#### 1700019N19Rik_ID12796_4 --> 2 - 2 Original Alignment aaTGCAAAAACGAGAAGAAACCGCTGCAGGAGCCCCCTATCCCTGGCTGGGCAGGCTACCTGCCCAGAGCTAGGGTCACTGAATTTGGCTATGCCACAAGGTATACCATCATGGCCAAAAAGTGCTACAAGGACTTCCTGGATTTGGTGGAGCAAGCCAAGAGGGCTCAGCTGAAGCCATATGAGca acctcttcaaacatgtctggacaactacgtgccatgactgtcctttgcagaaTGCAAAAATGAAAAGAAGCCCCTGCAGGGGCCTCCGGTTCCAGGCCGTGCTAGCTACCTGCCAAGAGCTCGGGTAACTGAATTTGGCTACGACACAAGATATACCATTATTGCCAAAAAGTGCTACAAGGACTTCCTGGGCTTGGTGGAGCAAACTAAAAGAGCTCAGCTCAAGCCGTATGAGcagtatgtacagttagtagctgattgagcttgctgaactgcaggagatggcg Alignment from CESAR aaTGCAAAAACGAGAAGAAACCGCTGCAGGAGCCCCCTATCCCTGGCTGGGCAGGCTACCTGCCCAGAGCTAGGGTCACTGAATTTGGCTATGCCACAAGGTATACCATCATGGCCAAAAAGTGCTACAAGGACTTCCTGGATTTGGTGGAGCAAGCCAAGAGGGCTCAGCTGAAGCCATATGAGca acctcttcaaacatgtctggacaactacgtgccatgactgtcctttgcagaaTGCAAAAATGAAAAGAAGCCCCTGCAGGGGCCTCCGGTTCCAGGCCGTGCTAGCTACCTGCCAAGAGCTCGGGTAACTGAATTTGGCTACGACACAAGATATACCATTATTGCCAAAAAGTGCTACAAGGACTTCCTGGGCTTGGTGGAGCAAACTAAAAGAGCTCAGCTCAAGCCGTATGAGcagtatgtacagttagtagctgattgagcttgctgaactgcaggagatggcg Alignment from Spaln_aa2Genome AATGCAAAAACGAGAAGAAACCGCTGCAGGAGCCCCCTATCCCTGGCTGGGCAGGCTACCTGCCCAGAGCTAGGGTCACTGAATTTGGCTATGCCACAAGGTATACCATCATGGCCAAAAAGTGCTACAAGGACTTCCTGGATTTGGTGGAGCAAGCCAAGAGGGCTCAGCTGAAGCCATATGAGCA acctcttcaaacatgtctggacaactacgtgccatgactgtcctttgcagAATGCAAAAATGAAAAGAAGCCCCTGCAGGGGCCTCCGGTTCCAGGCCGTGCTAGCTACCTGCCAAGAGCTCGGGTAACTGAATTTGGCTACGACACAAGATATACCATTATTGCCAAAAAGTGCTACAAGGACTTCCTGGGCTTGGTGGAGCAAACTAAAAGAGCTCAGCTCAAGCCGTATGAGCAgtatgtacagttagtagctgattgagcttgctgaactgcaggagatggcg Alignment from Spaln_nt2Genome AATGCAAAAACGAGAAGAAACCGCTGCAGGAGCCCCCTATCCCTGGCTGGGCAGGCTACCTGCCCAGAGCTAGGGTCACTGAATTTGGCTATGCCACAAGGTATACCATCATGGCCAAAAAGTGCTACAAGGACTTCCTGGATTTGGTGGAGCAAGCCAAGAGGGCTCAGCTGAAGCCATATGAGCA acctcttcaaacatgtctggacaactacgtgccatgactgtcctttgcagAATGCAAAAATGAAAAGAAGCCCCTGCAGGGGCCTCCGGTTCCAGGCCGTGCTAGCTACCTGCCAAGAGCTCGGGTAACTGAATTTGGCTACGACACAAGATATACCATTATTGCCAAAAAGTGCTACAAGGACTTCCTGGGCTTGGTGGAGCAAACTAAAAGAGCTCAGCTCAAGCCGTATGAGCAgtatgtacagttagtagctgattgagcttgctgaactgcaggagatggcg Alignment from Pairagon AATGCAAAAACGAGAAGAAACCGCTGCAGGAGCCCCCTATCCCTGGCTGGGCAGGCTACCTGCCCAGAGCTAGGGTCACTGAATTTGGCTATGCCACAAGGTATACCATCATGGCCAAAAAGTGCTACAAGGACTTCCTGGATTTGGTGGAGCAAGCCAAGAGGGCTCAGCTGAAGCCATATGAGCA acctcttcaaacatgtctggacaactacgtgccatgactgtcctttgcagAATGCAAAAATGAAAAGAAGCCCCTGCAGGGGCCTCCGGTTCCAGGCCGTGCTAGCTACCTGCCAAGAGCTCGGGTAACTGAATTTGGCTACGACACAAGATATACCATTATTGCCAAAAAGTGCTACAAGGACTTCCTGGGCTTGGTGGAGCAAACTAAAAGAGCTCAGCTCAAGCCGTATGAGCAgtatgtacagttagtagctgattgagcttgctgaactgcaggagatggcg Alignment from Exonerate_protein2genome AATGCAAAAACGAGAAGAAACCGCTGCAGGAGCCCCCTATCCCTGGCTGGGCAGGCTACCTGCCCAGAGCTAGGGTCACTGAATTTGGCTATGCCACAAGGTATACCATCATGGCCAAAAAGTGCTACAAGGACTTCCTGGATTTGGTGGAGCAAGCCAAGAGGGCTCAGCTGAAGCCATATGAGCA acctcttcaaacatgtctggacaactacgtgccatgactgtcctttgcagAATGCAAAAATGAAAAGAAGCCCCTGCAGGGGCCTCCGGTTCCAGGCCGTGCTAGCTACCTGCCAAGAGCTCGGGTAACTGAATTTGGCTACGACACAAGATATACCATTATTGCCAAAAAGTGCTACAAGGACTTCCTGGGCTTGGTGGAGCAAACTAAAAGAGCTCAGCTCAAGCCGTATGAGCAgtatgtacagttagtagctgattgagcttgctgaactgcaggagatggcg Alignment from Exonerate_coding2genome AATGCAAAAACGAGAAGAAACCGCTGCAGGAGCCCCCTATCCCTGGCTGGGCAGGCTACCTGCCCAGAGCTAGGGTCACTGAATTTGGCTATGCCACAAGGTATACCATCATGGCCAAAAAGTGCTACAAGGACTTCCTGGATTTGGTGGAGCAAGCCAAGAGGGCTCAGCTGAAGCCATATGAGCA acctcttcaaacatgtctggacaactacgtgccatgactgtcctttgcagAATGCAAAAATGAAAAGAAGCCCCTGCAGGGGCCTCCGGTTCCAGGCCGTGCTAGCTACCTGCCAAGAGCTCGGGTAACTGAATTTGGCTACGACACAAGATATACCATTATTGCCAAAAAGTGCTACAAGGACTTCCTGGGCTTGGTGGAGCAAACTAAAAGAGCTCAGCTCAAGCCGTATGAGCAgtatgtacagttagtagctgattgagcttgctgaactgcaggagatggcg Alignment from GeneWise AATGCAAAAACGAGAAGAAACCGCTGCAGGAGCCCCCTATCCCTGGCTGGGCAGGCTACCTGCCCAGAGCTAGGGTCACTGAATTTGGCTATGCCACAAGGTATACCATCATGGCCAAAAAGTGCTACAAGGACTTCCTGGATTTGGTGGAGCAAGCCAAGAGGGCTCAGCTGAAGCCATATGAGCA acctcttcaaacatgtctggacaactacgtgccatgactgtcctttgcagAATGCAAAAATGAAAAGAAGCCCCTGCAGGGGCCTCCGGTTCCAGGCCGTGCTAGCTACCTGCCAAGAGCTCGGGTAACTGAATTTGGCTACGACACAAGATATACCATTATTGCCAAAAAGTGCTACAAGGACTTCCTGGGCTTGGTGGAGCAAACTAAAAGAGCTCAGCTCAAGCCGTATGAGCAgtatgtacagttagtagctgattgagcttgctgaactgcaggagatggcg #### 1700025F22Rik_ID3133_3 --> 0 - 0 Original Alignment CTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTTCAAGTGTATATTCTACCCTGTGGCAATAT actatcatggaaataatcctagaactaggctttttttttcttctcaatagCTCATTTGGACAATGACCATGAATGCCCTTACTATCTTTGCAACACTCCTTGGTCTATTTTTGACAACAGTTAAAATTATAGTAACTTCCAGTGTATACTCCACTCTGTGGCACTACgtaagtatggcttcactggaagttgtccattataggtaattgtgactatt Alignment from CESAR CTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTTCAAGTGTATATTCTACCCTGTGGCAATAT actatcatggaaataatcctagaactaggctttttttttcttctcaatagCTCATTTGGACAATGACCATGAATGCCCTTACTATCTTTGCAACACTCCTTGGTCTATTTTTGACAACAGTTAAAATTATAGTAACTTCCAGTGTATACTCCACTCTGTGGCACTACgtaagtatggcttcactggaagttgtccattataggtaattgtgactatt Alignment from Spaln_aa2Genome CTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTTCAAGTGTATATTCTACCCTGTGGCAATAT actatcatggaaataatcctagaactaggctttttttttcttctcaatagCTCATTTGGACAATGACCATGAATGCCCTTACTATCTTTGCAACACTCCTTGGTCTATTTTTGACAACAGTTAAAATTATAGTAACTTCCAGTGTATACTCCACTCTGTGGCACTACgtaagtatggcttcactggaagttgtccattataggtaattgtgactatt Alignment from Spaln_nt2Genome CTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTTCAAGTGTATATTCTACCCTGTGGCAATAT actatcatggaaataatcctagaactaggctttttttttcttctcaatagCTCATTTGGACAATGACCATGAATGCCCTTACTATCTTTGCAACACTCCTTGGTCTATTTTTGACAACAGTTAAAATTATAGTAACTTCCAGTGTATACTCCACTCTGTGGCACTACgtaagtatggcttcactggaagttgtccattataggtaattgtgactatt Alignment from Pairagon CTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTTCAAGTGTATATTCTACCCTGTGGCAATAT actatcatggaaataatcctagaactaggctttttttttcttctcaatagCTCATTTGGACAATGACCATGAATGCCCTTACTATCTTTGCAACACTCCTTGGTCTATTTTTGACAACAGTTAAAATTATAGTAACTTCCAGTGTATACTCCACTCTGTGGCACTACgtaagtatggcttcactggaagttgtccattataggtaattgtgactatt Alignment from Exonerate_protein2genome CTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTTCAAGTGTATATTCTACCCTGTGGCAATAT actatcatggaaataatcctagaactaggctttttttttcttctcaatagCTCATTTGGACAATGACCATGAATGCCCTTACTATCTTTGCAACACTCCTTGGTCTATTTTTGACAACAGTTAAAATTATAGTAACTTCCAGTGTATACTCCACTCTGTGGCACTACgtaagtatggcttcactggaagttgtccattataggtaattgtgactatt Alignment from Exonerate_coding2genome CTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTTCAAGTGTATATTCTACCCTGTGGCAATAT actatcatggaaataatcctagaactaggctttttttttcttctcaatagCTCATTTGGACAATGACCATGAATGCCCTTACTATCTTTGCAACACTCCTTGGTCTATTTTTGACAACAGTTAAAATTATAGTAACTTCCAGTGTATACTCCACTCTGTGGCACTACgtaagtatggcttcactggaagttgtccattataggtaattgtgactatt Alignment from GeneWise CTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTTCAAGTGTATATTCTACCCTGTGGCAATAT actatcatggaaataatcctagaactaggctttttttttcttctcaatagCTCATTTGGACAATGACCATGAATGCCCTTACTATCTTTGCAACACTCCTTGGTCTATTTTTGACAACAGTTAAAATTATAGTAACTTCCAGTGTATACTCCACTCTGTGGCACTACgtaagtatggcttcactggaagttgtccattataggtaattgtgactatt #### 1700055N04Rik_ID224_2 --> 1 - 0 Original Alignment gACGGACCCTTTTGAAGAAAAGCTACAGAGGCTGAAGGAGGCCTTCAACACAGGGAAGACAAAGACGGCTAAGTTCAGGGCTGAACAACTGCAGAGCCTGGGCCGCTTCCTGCAGGACAATAGCAAACAGCTTCATGACGCCCTGGATGGAGACCTGGGCAAG ctccactcatcagataatttgaatacactttgcatttttattctcttcagcATGGACCCATTTGAAGAAAAGTTACAACGGCTTAAGGAGGCCTTTAACATGGGGAAAACAAAGATGGCTAAGTGCCGAGCAGAGCAACTGCAGAGCCTGGGCTGCTTTCTGCAAGACAACATTAAGCAGCTACATGATGCATTGGATGGAGACCTTGGTAGGgtgagctctggagggttgctgatggggcaggtatccttggctgcactagg Alignment from CESAR gACGGACCCTTTTGAAGAAAAGCTACAGAGGCTGAAGGAGGCCTTCAACACAGGGAAGACAAAGACGGCTAAGTTCAGGGCTGAACAACTGCAGAGCCTGGGCCGCTTCCTGCAGGACAATAGCAAACAGCTTCATGACGCCCTGGATGGAGACCTGGGCAAG ctccactcatcagataatttgaatacactttgcatttttattctcttcagcATGGACCCATTTGAAGAAAAGTTACAACGGCTTAAGGAGGCCTTTAACATGGGGAAAACAAAGATGGCTAAGTGCCGAGCAGAGCAACTGCAGAGCCTGGGCTGCTTTCTGCAAGACAACATTAAGCAGCTACATGATGCATTGGATGGAGACCTTGGTAGGgtgagctctggagggttgctgatggggcaggtatccttggctgcactagg Alignment from Spaln_aa2Genome GACGGACCCTTTTGAAGAAAAGCTACAGAGGCTGAAGGAGGCCTTCAACACAGGGAAGACAAAGACGGCTAAGTTCAGGGCTGAACAACTGCAGAGCCTGGGCCGCTTCCTGCAGGACAATAGCAAACAGCTTCATGACGCCCTGGATGGAGACCTGGGCAAG ctccactcatcagataatttgaatacactttgcatttttattctcttcagCATGGACCCATTTGAAGAAAAGTTACAACGGCTTAAGGAGGCCTTTAACATGGGGAAAACAAAGATGGCTAAGTGCCGAGCAGAGCAACTGCAGAGCCTGGGCTGCTTTCTGCAAGACAACATTAAGCAGCTACATGATGCATTGGATGGAGACCTTGGTAGGgtgagctctggagggttgctgatggggcaggtatccttggctgcactagg Alignment from Spaln_nt2Genome GACGGACCCTTTTGAAGAAAAGCTACAGAGGCTGAAGGAGGCCTTCAACACAGGGAAGACAAAGACGGCTAAGTTCAGGGCTGAACAACTGCAGAGCCTGGGCCGCTTCCTGCAGGACAATAGCAAACAGCTTCATGACGCCCTGGATGGAGACCTGGGCAAG ctccactcatcagataatttgaatacactttgcatttttattctcttcagCATGGACCCATTTGAAGAAAAGTTACAACGGCTTAAGGAGGCCTTTAACATGGGGAAAACAAAGATGGCTAAGTGCCGAGCAGAGCAACTGCAGAGCCTGGGCTGCTTTCTGCAAGACAACATTAAGCAGCTACATGATGCATTGGATGGAGACCTTGGTAGGgtgagctctggagggttgctgatggggcaggtatccttggctgcactagg Alignment from Pairagon GACGGACCCTTTTGAAGAAAAGCTACAGAGGCTGAAGGAGGCCTTCAACACAGGGAAGACAAAGACGGCTAAGTTCAGGGCTGAACAACTGCAGAGCCTGGGCCGCTTCCTGCAGGACAATAGCAAACAGCTTCATGACGCCCTGGATGGAGACCTGGGCAAG ctccactcatcagataatttgaatacactttgcatttttattctcttcagCATGGACCCATTTGAAGAAAAGTTACAACGGCTTAAGGAGGCCTTTAACATGGGGAAAACAAAGATGGCTAAGTGCCGAGCAGAGCAACTGCAGAGCCTGGGCTGCTTTCTGCAAGACAACATTAAGCAGCTACATGATGCATTGGATGGAGACCTTGGTAGGgtgagctctggagggttgctgatggggcaggtatccttggctgcactagg Alignment from Exonerate_protein2genome GACGGACCCTTTTGAAGAAAAGCTACAGAGGCTGAAGGAGGCCTTCAACACAGGGAAGACAAAGACGGCTAAGTTCAGGGCTGAACAACTGCAGAGCCTGGGCCGCTTCCTGCAGGACAATAGCAAACAGCTTCATGACGCCCTGGATGGAGACCTGGGCAAG ctccactcatcagataatttgaatacactttgcatttttattctcttcagCATGGACCCATTTGAAGAAAAGTTACAACGGCTTAAGGAGGCCTTTAACATGGGGAAAACAAAGATGGCTAAGTGCCGAGCAGAGCAACTGCAGAGCCTGGGCTGCTTTCTGCAAGACAACATTAAGCAGCTACATGATGCATTGGATGGAGACCTTGGTAGGgtgagctctggagggttgctgatggggcaggtatccttggctgcactagg Alignment from Exonerate_coding2genome GACGGACCCTTTTGAAGAAAAGCTACAGAGGCTGAAGGAGGCCTTCAACACAGGGAAGACAAAGACGGCTAAGTTCAGGGCTGAACAACTGCAGAGCCTGGGCCGCTTCCTGCAGGACAATAGCAAACAGCTTCATGACGCCCTGGATGGAGACCTGGGCAAG ctccactcatcagataatttgaatacactttgcatttttattctcttcagCATGGACCCATTTGAAGAAAAGTTACAACGGCTTAAGGAGGCCTTTAACATGGGGAAAACAAAGATGGCTAAGTGCCGAGCAGAGCAACTGCAGAGCCTGGGCTGCTTTCTGCAAGACAACATTAAGCAGCTACATGATGCATTGGATGGAGACCTTGGTAGGgtgagctctggagggttgctgatggggcaggtatccttggctgcactagg Alignment from GeneWise GACCCTTTTGAAGAAAAGCTACAGAGGCTGAAGGAGGCCTTCAACACAGGGAAGACAAAGACGGCTAAGTTCAGGGCTGAACAACTGCAGAGCCTGGGCCGCTTCCTGCAGGACAATAGCAAACAGCTTCATGACGCCCTGGATGGAGACCTGGGCAAG ctccactcatcagataatttgaatacactttgcatttttattctcttcagcatgGACCCATTTGAAGAAAAGTTACAACGGCTTAAGGAGGCCTTTAACATGGGGAAAACAAAGATGGCTAAGTGCCGAGCAGAGCAACTGCAGAGCCTGGGCTGCTTTCTGCAAGACAACATTAAGCAGCTACATGATGCATTGGATGGAGACCTTGGTAGGgtgagctctggagggttgctgatggggcaggtatccttggctgcactagg #### 1700123I01Rik_ID1490_2 --> 1 - 0 Original Alignment aGGAGAAGAAATAGAGGATAAGGAAGTCATCGTCCAGGAGCTGGAG cattaggtatagtacagtttcttatggtgagtgctgtgttcccttcccagaGGACATGAAATAGAGGATAAGAAAGTCATCATTCAGGAGCTAGAGgtctgtgcatttctaaattggggggatgccattgccctcgaaagggcttg Alignment from CESAR aGGAGAAGAAATAGAGGATAAGGAAGTCATCGTCCAGGAGCTGGAG cattaggtatagtacagtttcttatggtgagtgctgtgttcccttcccagaGGACATGAAATAGAGGATAAGAAAGTCATCATTCAGGAGCTAGAGgtctgtgcatttctaaattggggggatgccattgccctcgaaagggcttg Alignment from Spaln_aa2Genome AGGAGAAGAAATAGAGGATAAGGAAGTCATCGTCCAGGAGCTGGAG cattaggtatagtacagtttcttatggtgagtgctgtgttcccttcccagAGGACATGAAATAGAGGATAAGAAAGTCATCATTCAGGAGCTAGAGgtctgtgcatttctaaattggggggatgccattgccctcgaaagggcttg Alignment from Spaln_nt2Genome AGGAGAAGAAATAGAGGATAAGGAAGTCATCGTCCAGGAGCTGGAG cattaggtatagtacagtttcttatggtgagtgctgtgttcccttcccagAGGACATGAAATAGAGGATAAGAAAGTCATCATTCAGGAGCTAGAGgtctgtgcatttctaaattggggggatgccattgccctcgaaagggcttg Alignment from Pairagon AGGAGAAGAAATAGAGGATAAGGAAGTCATCGTCCAGGAGCTGGAG cattaggtatagtacagtttcttatggtgagtgctgtgttcccttcccagAGGACATGAAATAGAGGATAAGAAAGTCATCATTCAGGAGCTAGAGgtctgtgcatttctaaattggggggatgccattgccctcgaaagggcttg Alignment from Exonerate_protein2genome AGGAGAAGAAATAGAGGATAAGGAAGTCATCGTCCAGGAGCTGGAG cattaggtatagtacagtttcttatggtgagtgctgtgttcccttcccagAGGACATGAAATAGAGGATAAGAAAGTCATCATTCAGGAGCTAGAGgtctgtgcatttctaaattggggggatgccattgccctcgaaagggcttg Alignment from Exonerate_coding2genome AGGAGAAGAAATAGAGGATAAGGAAGTCATCGTCCAGGAGCTGGAG cattaggtatagtacagtttcttatggtgagtgctgtgttcccttcccagAGGACATGAAATAGAGGATAAGAAAGTCATCATTCAGGAGCTAGAGgtctgtgcatttctaaattggggggatgccattgccctcgaaagggcttg Alignment from GeneWise AGGAGAAGAAATAGAGGATAAGGAAGTCATCGTCCAGGAGCTGGAG cattaggtatagtacagtttcttatggtgagtgctgtgttcccttcccagAGGACATGAAATAGAGGATAAGAAAGTCATCATTCAGGAGCTAGAGgtctgtgcatttctaaattggggggatgccattgccctcgaaagggcttg #### 1700123I01Rik_ID1494_6 --> 0 - 2 Original Alignment GTCCTAGCTGAGACGGAAGCAGAAGAAGCCACAATGAGGAAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCACACag ctagacccaagatctgaagttagtacttttactctttgcttctcatacagGTCCTAGCTGAAACAGAAGCAAAAGAAGCAACAAAGAGGGAATGGAAGCGGAGACTCATGGAAGAGCCCAGCTCCCCAAGCAGGCAAGGGCCTCACaggtgagtggtaagaggattggtacttgttaagatgccctggttgttatccc Alignment from CESAR GTCCTAGCTGAGACGGAAGCAGAAGAAGCCACAATGAGGAAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCACACag ctagacccaagatctgaagttagtacttttactctttgcttctcatacagGTCCTAGCTGAAACAGAAGCAAAAGAAGCAACAAAGAGGGAATGGAAGCGGAGACTCATGGAAGAGCCCAGCTCCCCAAGCAGGCAAGGGCCTCACaggtgagtggtaagaggattggtacttgttaagatgccctggttgttatccc Alignment from Spaln_aa2Genome GTCCTAGCTGAGACGGAAGCAGAAGAAGCCACAATGAGGAAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCACACAG ctagacccaagatctgaagttagtacttttactctttgcttctcatacagGTCCTAGCTGAAACAGAAGCAAAAGAAGCAACAAAGAGGGAATGGAAGCGGAGACTCATGGAAGAGCCCAGCTCCCCAAGCAGGCAAGGGCCTCACAGgtgagtggtaagaggattggtacttgttaagatgccctggttgttatccc Alignment from Spaln_nt2Genome GTCCTAGCTGAGACGGAAGCAGAAGAAGCCACAATGAGGAAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCACACAG ctagacccaagatctgaagttagtacttttactctttgcttctcatacagGTCCTAGCTGAAACAGAAGCAAAAGAAGCAACAAAGAGGGAATGGAAGCGGAGACTCATGGAAGAGCCCAGCTCCCCAAGCAGGCAAGGGCCTCACAGgtgagtggtaagaggattggtacttgttaagatgccctggttgttatccc Alignment from Pairagon GTCCTAGCTGAGACGGAAGCAGAAGAAGCCACAATGAGGAAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCACACAG ctagacccaagatctgaagttagtacttttactctttgcttctcatacagGTCCTAGCTGAAACAGAAGCAAAAGAAGCAACAAAGAGGGAATGGAAGCGGAGACTCATGGAAGAGCCCAGCTCCCCAAGCAGGCAAGGGCCTCACAGgtgagtggtaagaggattggtacttgttaagatgccctggttgttatccc Alignment from Exonerate_protein2genome GTCCTAGCTGAGACGGAAGCAGAAGAAGCCACAATGAGGAAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCACACAG ctagacccaagatctgaagttagtacttttactctttgcttctcatacagGTCCTAGCTGAAACAGAAGCAAAAGAAGCAACAAAGAGGGAATGGAAGCGGAGACTCATGGAAGAGCCCAGCTCCCCAAGCAGGCAAGGGCCTCACAGgtgagtggtaagaggattggtacttgttaagatgccctggttgttatccc Alignment from Exonerate_coding2genome CTTGAGTTGGTCCTAGCTGAGACGGAAGCAGAAGAAGCCACAATGAGGAAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCACACAG ctagacccaagatctgaagttagtacttttactctttgcttCTCATACAGGTCCTAGCTGAAACAGAAGCAAAAGAAGCAACAAAGAGGGAATGGAAGCGGAGACTCATGGAAGAGCCCAGCTCCCCAAGCAGGCAAGGGCCTCACAGgtgagtggtaagaggattggtacttgttaagatgccctggttgttatccc Alignment from GeneWise GTCCTAGCTGAGACGGAAGCAGAAGAAGCCACAATGAGGAAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCACACAG ctagacccaagatctgaagttagtacttttactctttgcttctcatacagGTCCTAGCTGAAACAGAAGCAAAAGAAGCAACAAAGAGGGAATGGAAGCGGAGACTCATGGAAGAGCCCAGCTCCCCAAGCAGGCAAGGGCCTCACAGgtgagtggtaagaggattggtacttgttaagatgccctggttgttatccc #### 1700123I01Rik_ID1498_8 --> 0 - 1 Original Alignment AGCACGGACGAAGAAGCCCAGCAGGAATATCAGGACACCCCAGCTTCTAATGCCATTGCTGTCAAGGAACAGg atagccctggccatagcctaaccgtcctccccatactgtccctcccacagAGCACCGATGAAGAAGCCCAGCAGGAATATCAGGACACCCCAGCTTCTAATGCCATTGCTGTCAAAGACCAGggtaagacaggttgacatggggtcattagaagtacagagtaaaattgctgt Alignment from CESAR AGCACGGACGAAGAAGCCCAGCAGGAATATCAGGACACCCCAGCTTCTAATGCCATTGCTGTCAAGGAACAGg atagccctggccatagcctaaccgtcctccccatactgtccctcccacagAGCACCGATGAAGAAGCCCAGCAGGAATATCAGGACACCCCAGCTTCTAATGCCATTGCTGTCAAAGACCAGggtaagacaggttgacatggggtcattagaagtacagagtaaaattgctgt Alignment from Spaln_aa2Genome AGCACGGACGAAGAAGCCCAGCAGGAATATCAGGACACCCCAGCTTCTAATGCCATTGCTGTCAAGGAACAGG atagccctggccatagcctaaccgtcctccccatactgtccctcccacagAGCACCGATGAAGAAGCCCAGCAGGAATATCAGGACACCCCAGCTTCTAATGCCATTGCTGTCAAAGACCAGGgtaagacaggttgacatggggtcattagaagtacagagtaaaattgctgt Alignment from Spaln_nt2Genome AGCACGGACGAAGAAGCCCAGCAGGAATATCAGGACACCCCAGCTTCTAATGCCATTGCTGTCAAGGAACAGG atagccctggccatagcctaaccgtcctccccatactgtccctcccacagAGCACCGATGAAGAAGCCCAGCAGGAATATCAGGACACCCCAGCTTCTAATGCCATTGCTGTCAAAGACCAGGgtaagacaggttgacatggggtcattagaagtacagagtaaaattgctgt Alignment from Pairagon AGCACGGACGAAGAAGCCCAGCAGGAATATCAGGACACCCCAGCTTCTAATGCCATTGCTGTCAAGGAACAGG atagccctggccatagcctaaccgtcctccccatactgtccctcccacagAGCACCGATGAAGAAGCCCAGCAGGAATATCAGGACACCCCAGCTTCTAATGCCATTGCTGTCAAAGACCAGGgtaagacaggttgacatggggtcattagaagtacagagtaaaattgctgt Alignment from Exonerate_protein2genome AGCACGGACGAAGAAGCCCAGCAGGAATATCAGGACACCCCAGCTTCTAATGCCATTGCTGTCAAGGAACAGG atagccctggccatagcctaaccgtcctccccatactgtccctcccacagAGCACCGATGAAGAAGCCCAGCAGGAATATCAGGACACCCCAGCTTCTAATGCCATTGCTGTCAAAGACCAGGgtaagacaggttgacatggggtcattagaagtacagagtaaaattgctgt Alignment from Exonerate_coding2genome AGCACGGACGAAGAAGCCCAGCAGGAATATCAGGACACCCCAGCTTCTAATGCCATTGCTGTCAAGGAACAGG atagccctggccatagcctaaccgtcctccccatactgtccctcccacagAGCACCGATGAAGAAGCCCAGCAGGAATATCAGGACACCCCAGCTTCTAATGCCATTGCTGTCAAAGACCAGGgtaagacaggttgacatggggtcattagaagtacagagtaaaattgctgt Alignment from GeneWise AGCACGGACGAAGAAGCCCAGCAGGAATATCAGGACACCCCAGCTTCTAATGCCATTGCTGTCAAGGAACAGG atagccctggccatagcctaaccgtcctccccatactgtccctcccacagAGCACCGATGAAGAAGCCCAGCAGGAATATCAGGACACCCCAGCTTCTAATGCCATTGCTGTCAAAGACCAGGgtaagacaggttgacatggggtcattagaagtacagagtaaaattgctgt #### 1810009A15Rik_ID2453_2 --> 0 - 2 Original Alignment GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGgc agtaggtgaaaagccacttggcatggctggtagctgtgctgttcccccagGAGCTAAGGAAGAAGTTGTCTAAGCGTCACAGGGTATTAAGTAAGGATTGGCAAAGGAAATGTCAGGTGGTTGGTGCTGTGATAGATGAAGGCTTGACTATGAAACACCACCTCAAGAAGCGGgcgtaattataaagctacttcttactagctacgatgatcctttggtattaga Alignment from CESAR GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGgc agtaggtgaaaagccacttggcatggctggtagctgtgctgttcccccagGAGCTAAGGAAGAAGTTGTCTAAGCGTCACAGGGTATTAAGTAAGGATTGGCAAAGGAAATGTCAGGTGGTTGGTGCTGTGATAGATGAAGGCTTGACTATGAAACACCACCTCAAGAAGCGGgcgtaattataaagctacttcttactagctacgatgatcctttggtattaga Alignment from Spaln_aa2Genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC agtaggtgaaaagccacttggcatggctggtagctgtgctgttcccccagGAGCTAAGGAAGAAGTTGTCTAAGCGTCACAGGGTATTAAGTAAGGATTGGCAAAGGAAATGTCAGGTGGTTGGTGCTGTGATAGATGAAGGCTTGACTATGAAACACCACCTCAAGAAGCGGGCgtaattataaagctacttcttactagctacgatgatcctttggtattaga Alignment from Spaln_nt2Genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC agtaggtgaaaagccacttggcatggctggtagctgtgctgttcccccagGAGCTAAGGAAGAAGTTGTCTAAGCGTCACAGGGTATTAAGTAAGGATTGGCAAAGGAAATGTCAGGTGGTTGGTGCTGTGATAGATGAAGGCTTGACTATGAAACACCACCTCAAGAAGCGGGCgtaattataaagctacttcttactagctacgatgatcctttggtattaga Alignment from Pairagon GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC agtaggtgaaaagccacttggcatggctggtagctgtgctgttcccccagGAGCTAAGGAAGAAGTTGTCTAAGCGTCACAGGGTATTAAGTAAGGATTGGCAAAGGAAATGTCAGGTGGTTGGTGCTGTGATAGATGAAGGCTTGACTATGAAACACCACCTCAAGAAGCGGGCgtaattataaagctacttcttactagctacgatgatcctttggtattaga Alignment from Exonerate_protein2genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC agtaggtgaaaagccacttggcatggctggtagctgtgctgttcccccagGAGCTAAGGAAGAAGTTGTCTAAGCGTCACAGGGTATTAAGTAAGGATTGGCAAAGGAAATGTCAGGTGGTTGGTGCTGTGATAGATGAAGGCTTGACTATGAAACACCACCTCAAGAAGCGGGCgtaattataaagctacttcttactagctacgatgatcctttggtattaga Alignment from Exonerate_coding2genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC agtaggtgaaaagccacttggcatggctggtagctgtgctgttcccccagGAGCTAAGGAAGAAGTTGTCTAAGCGTCACAGGGTATTAAGTAAGGATTGGCAAAGGAAATGTCAGGTGGTTGGTGCTGTGATAGATGAAGGCTTGACTATGAAACACCACCTCAAGAAGCGGGCgtaattataaagctacttcttactagctacgatgatcctttggtattaga Alignment from GeneWise GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC agtaggtgaaaagccacttggcatggctggtagctgtgctgttcccccagGAGCTAAGGAAGAAGTTGTCTAAGCGTCACAGGGTATTAAGTAAGGATTGGCAAAGGAAATGTCAGGTGGTTGGTGCTGTGATAGATGAAGGCTTGACTATGAAACACCACCTCAAGAAGCGGGCgtaattataaagctacttcttactagctacgatgatcctttggtattaga #### 2410127L17Rik_ID4451_6 --> 2 - 1 Original Alignment atGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGATTATATTGATACAATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTg attagtacaaataccaatatgaattgattacataatctattctatttcagatGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGAGTACATTGATACCATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTggtgagagcttgtactttctaagtaagggtggtaaccaagagaaatacgta Alignment from CESAR atGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGATTATATTGATACAATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTg attagtacaaataccaatatgaattgattacataatctattctatttcagatGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGAGTACATTGATACCATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTggtgagagcttgtactttctaagtaagggtggtaaccaagagaaatacgta Alignment from Spaln_aa2Genome ATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGATTATATTGATACAATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTG attagtacaaataccaatatgaattgattacataatctattctatttcagATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGAGTACATTGATACCATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTGgtgagagcttgtactttctaagtaagggtggtaaccaagagaaatacgta Alignment from Spaln_nt2Genome ATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGATTATATTGATACAATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTG attagtacaaataccaatatgaattgattacataatctattctatttcagATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGAGTACATTGATACCATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTGgtgagagcttgtactttctaagtaagggtggtaaccaagagaaatacgta Alignment from Pairagon ATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGATTATATTGATACAATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTG attagtacaaataccaatatgaattgattacataatctattctatttcagATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGAGTACATTGATACCATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTGgtgagagcttgtactttctaagtaagggtggtaaccaagagaaatacgta Alignment from Exonerate_protein2genome ATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGATTATATTGATACAATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTG attagtacaaataccaatatgaattgattacataatctattctatttcagATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGAGTACATTGATACCATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTGgtgagagcttgtactttctaagtaagggtggtaaccaagagaaatacgta Alignment from Exonerate_coding2genome ATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGATTATATTGATACAATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTG attagtacaaataccaatatgaattgattacataatctattctatttcagATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGAGTACATTGATACCATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTGgtgagagcttgtactttctaagtaagggtggtaaccaagagaaatacgta Alignment from GeneWise ATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGATTATATTGATACAATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTG attagtacaaataccaatatgaattgattacataatctattctatttcagATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGAGTACATTGATACCATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTGgtgagagcttgtactttctaagtaagggtggtaaccaagagaaatacgta #### 2700081O15Rik_ID2153_3 --> 2 - 1 Original Alignment gcAAAGCCCCAGCTGGTGGGGGCTGCCGGCGCCAGCGGCGAGGGGTCCGAGGGGGCTCAGTGGCACCTCGGCGCCGGCGCCTCGCAGCCTCCCGAAGGGCTGGGGGCAGCAGGGGGCTGGGGGCCCGGCGCCTGGAGCGGAGGCTGAAGGAGTCACTGCAGAACTGGTTCCGGGCTGAGTGTCTCATGGACTACGACCCACGGGGGAATCGGCTGGTGTGCATGGCCTGCGGCCGGGCACTGCCCAGCCTGCACTTGGACGACATCCGTGCTCACGTGCTGGAAGTGCACCCCAGCTCCCTAGGGCTCAGTGGCCCCCAGCGCAGTGCCCTGCTGCAGGCCTGGGGTGACCAGCCTGAGGCTCTGTCCGAGCTCACCCAGCCCTCACCAg ggatctctaagtgtggaggagaatcgttaatattttgttttaacaattaggcAAAGCCCCGGCTGGGGGGGGCTGCCGGCGCCAGCGTCGAGGGGTTCGAGGGGGGTCAGTGGCACCTCGGCGTCGACGCCTTGGAGCCTCCCGAAGGGCTGGAGGCAGCAGGGGGTTGGGGGCGCGGCGGTTGGAGCGGAGATTGAAGGAGTCACTACAGAACTGGTTCCGGGCGGAGTGTCTGATGGACTATGACCCACGGGGGAATCGGCTAGTGTGCATGGCCTGTGGCCGTGCACTGCCCAGCCTGCACCTGGATGACATACATGCTCATGTCTTGGAAGTGCATCCCAGCTCCCTTGGGCTCAGTGGCCCCCAGCGGAGTGCCCTCCTGCAGGCCTGGGGTGATCAACCTGAGGCCCTGTCTGAGCTTACTCAATCTTCACCAggtaagagatgagcactcaggtttattcaaatggggagtcccagagactgg Alignment from CESAR gcAAAGCCCCAGCTGGTGGGGGCTGCCGGCGCCAGCGGCGAGGGGTCCGAGGGGGCTCAGTGGCACCTCGGCGCCGGCGCCTCGCAGCCTCCCGAAGGGCTGGGGGCAGCAGGGGGCTGGGGGCCCGGCGCCTGGAGCGGAGGCTGAAGGAGTCACTGCAGAACTGGTTCCGGGCTGAGTGTCTCATGGACTACGACCCACGGGGGAATCGGCTGGTGTGCATGGCCTGCGGCCGGGCACTGCCCAGCCTGCACTTGGACGACATCCGTGCTCACGTGCTGGAAGTGCACCCCAGCTCCCTAGGGCTCAGTGGCCCCCAGCGCAGTGCCCTGCTGCAGGCCTGGGGTGACCAGCCTGAGGCTCTGTCCGAGCTCACCCAGCCCTCACCAg ggatctctaagtgtggaggagaatcgttaatattttgttttaacaattaggcAAAGCCCCGGCTGGGGGGGGCTGCCGGCGCCAGCGTCGAGGGGTTCGAGGGGGGTCAGTGGCACCTCGGCGTCGACGCCTTGGAGCCTCCCGAAGGGCTGGAGGCAGCAGGGGGTTGGGGGCGCGGCGGTTGGAGCGGAGATTGAAGGAGTCACTACAGAACTGGTTCCGGGCGGAGTGTCTGATGGACTATGACCCACGGGGGAATCGGCTAGTGTGCATGGCCTGTGGCCGTGCACTGCCCAGCCTGCACCTGGATGACATACATGCTCATGTCTTGGAAGTGCATCCCAGCTCCCTTGGGCTCAGTGGCCCCCAGCGGAGTGCCCTCCTGCAGGCCTGGGGTGATCAACCTGAGGCCCTGTCTGAGCTTACTCAATCTTCACCAggtaagagatgagcactcaggtttattcaaatggggagtcccagagactgg Alignment from Spaln_aa2Genome GCAAAGCCCCAGCTGGTGGGGGCTGCCGGCGCCAGCGGCGAGGGGTCCGAGGGGGCTCAGTGGCACCTCGGCGCCGGCGCCTCGCAGCCTCCCGAAGGGCTGGGGGCAGCAGGGGGCTGGGGGCCCGGCGCCTGGAGCGGAGGCTGAAGGAGTCACTGCAGAACTGGTTCCGGGCTGAGTGTCTCATGGACTACGACCCACGGGGGAATCGGCTGGTGTGCATGGCCTGCGGCCGGGCACTGCCCAGCCTGCACTTGGACGACATCCGTGCTCACGTGCTGGAAGTGCACCCCAGCTCCCTAGGGCTCAGTGGCCCCCAGCGCAGTGCCCTGCTGCAGGCCTGGGGTGACCAGCCTGAGGCTCTGTCCGAGCTCACCCAGCCCTCACCAG ggatctctaagtgtggaggagaatcgttaatattttgttttaacaattagGCAAAGCCCCGGCTGGGGGGGGCTGCCGGCGCCAGCGTCGAGGGGTTCGAGGGGGGTCAGTGGCACCTCGGCGTCGACGCCTTGGAGCCTCCCGAAGGGCTGGAGGCAGCAGGGGGTTGGGGGCGCGGCGGTTGGAGCGGAGATTGAAGGAGTCACTACAGAACTGGTTCCGGGCGGAGTGTCTGATGGACTATGACCCACGGGGGAATCGGCTAGTGTGCATGGCCTGTGGCCGTGCACTGCCCAGCCTGCACCTGGATGACATACATGCTCATGTCTTGGAAGTGCATCCCAGCTCCCTTGGGCTCAGTGGCCCCCAGCGGAGTGCCCTCCTGCAGGCCTGGGGTGATCAACCTGAGGCCCTGTCTGAGCTTACTCAATCTTCACCAGgtaagagatgagcactcaggtttattcaaatggggagtcccagagactgg Alignment from Spaln_nt2Genome GCAAAGCCCCAGCTGGTGGGGGCTGCCGGCGCCAGCGGCGAGGGGTCCGAGGGGGCTCAGTGGCACCTCGGCGCCGGCGCCTCGCAGCCTCCCGAAGGGCTGGGGGCAGCAGGGGGCTGGGGGCCCGGCGCCTGGAGCGGAGGCTGAAGGAGTCACTGCAGAACTGGTTCCGGGCTGAGTGTCTCATGGACTACGACCCACGGGGGAATCGGCTGGTGTGCATGGCCTGCGGCCGGGCACTGCCCAGCCTGCACTTGGACGACATCCGTGCTCACGTGCTGGAAGTGCACCCCAGCTCCCTAGGGCTCAGTGGCCCCCAGCGCAGTGCCCTGCTGCAGGCCTGGGGTGACCAGCCTGAGGCTCTGTCCGAGCTCACCCAGCCCTCACCAG ggatctctaagtgtggaggagaatcgttaatattttgttttaacaattagGCAAAGCCCCGGCTGGGGGGGGCTGCCGGCGCCAGCGTCGAGGGGTTCGAGGGGGGTCAGTGGCACCTCGGCGTCGACGCCTTGGAGCCTCCCGAAGGGCTGGAGGCAGCAGGGGGTTGGGGGCGCGGCGGTTGGAGCGGAGATTGAAGGAGTCACTACAGAACTGGTTCCGGGCGGAGTGTCTGATGGACTATGACCCACGGGGGAATCGGCTAGTGTGCATGGCCTGTGGCCGTGCACTGCCCAGCCTGCACCTGGATGACATACATGCTCATGTCTTGGAAGTGCATCCCAGCTCCCTTGGGCTCAGTGGCCCCCAGCGGAGTGCCCTCCTGCAGGCCTGGGGTGATCAACCTGAGGCCCTGTCTGAGCTTACTCAATCTTCACCAGgtaagagatgagcactcaggtttattcaaatggggagtcccagagactgg Alignment from Pairagon GCAAAGCCCCAGCTGGTGGGGGCTGCCGGCGCCAGCGGCGAGGGGTCCGAGGGGGCTCAGTGGCACCTCGGCGCCGGCGCCTCGCAGCCTCCCGAAGGGCTGGGGGCAGCAGGGGGCTGGGGGCCCGGCGCCTGGAGCGGAGGCTGAAGGAGTCACTGCAGAACTGGTTCCGGGCTGAGTGTCTCATGGACTACGACCCACGGGGGAATCGGCTGGTGTGCATGGCCTGCGGCCGGGCACTGCCCAGCCTGCACTTGGACGACATCCGTGCTCACGTGCTGGAAGTGCACCCCAGCTCCCTAGGGCTCAGTGGCCCCCAGCGCAGTGCCCTGCTGCAGGCCTGGGGTGACCAGCCTGAGGCTCTGTCCGAGCTCACCCAGCCCTCACCAG ggatctctaagtgtggaggagaatcgttaatattttgttttaacaattagGCAAAGCCCCGGCTGGGGGGGGCTGCCGGCGCCAGCGTCGAGGGGTTCGAGGGGGGTCAGTGGCACCTCGGCGTCGACGCCTTGGAGCCTCCCGAAGGGCTGGAGGCAGCAGGGGGTTGGGGGCGCGGCGGTTGGAGCGGAGATTGAAGGAGTCACTACAGAACTGGTTCCGGGCGGAGTGTCTGATGGACTATGACCCACGGGGGAATCGGCTAGTGTGCATGGCCTGTGGCCGTGCACTGCCCAGCCTGCACCTGGATGACATACATGCTCATGTCTTGGAAGTGCATCCCAGCTCCCTTGGGCTCAGTGGCCCCCAGCGGAGTGCCCTCCTGCAGGCCTGGGGTGATCAACCTGAGGCCCTGTCTGAGCTTACTCAATCTTCACCAGgtaagagatgagcactcaggtttattcaaatggggagtcccagagactgg Alignment from Exonerate_protein2genome GCAAAGCCCCAGCTGGTGGGGGCTGCCGGCGCCAGCGGCGAGGGGTCCGAGGGGGCTCAGTGGCACCTCGGCGCCGGCGCCTCGCAGCCTCCCGAAGGGCTGGGGGCAGCAGGGGGCTGGGGGCCCGGCGCCTGGAGCGGAGGCTGAAGGAGTCACTGCAGAACTGGTTCCGGGCTGAGTGTCTCATGGACTACGACCCACGGGGGAATCGGCTGGTGTGCATGGCCTGCGGCCGGGCACTGCCCAGCCTGCACTTGGACGACATCCGTGCTCACGTGCTGGAAGTGCACCCCAGCTCCCTAGGGCTCAGTGGCCCCCAGCGCAGTGCCCTGCTGCAGGCCTGGGGTGACCAGCCTGAGGCTCTGTCCGAGCTCACCCAGCCCTCACCAGACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCC ggatctctaagtgtggaggagaatcgttaatattttgttttaacaattagGCAAAGCCCCGGCTGGGGGGGGCTGCCGGCGCCAGCGTCGAGGGGTTCGAGGGGGGTCAGTGGCACCTCGGCGTCGACGCCTTGGAGCCTCCCGAAGGGCTGGAGGCAGCAGGGGGTTGGGGGCGCGGCGGTTGGAGCGGAGATTGAAGGAGTCACTACAGAACTGGTTCCGGGCGGAGTGTCTGATGGACTATGACCCACGGGGGAATCGGCTAGTGTGCATGGCCTGTGGCCGTGCACTGCCCAGCCTGCACCTGGATGACATACATGCTCATGTCTTGGAAGTGCATCCCAGCTCCCTTGGGCTCAGTGGCCCCCAGCGGAGTGCCCTCCTGCAGGCCTGGGGTGATCAACCTGAGGCCCTGTCTGAGCTTACTCAATCTTCACCAGGTAAGAGATGAGCACTCAGGTTTATTCAAATGGGGAGTCCCAGAGACTGG Alignment from Exonerate_coding2genome GCAAAGCCCCAGCTGGTGGGGGCTGCCGGCGCCAGCGGCGAGGGGTCCGAGGGGGCTCAGTGGCACCTCGGCGCCGGCGCCTCGCAGCCTCCCGAAGGGCTGGGGGCAGCAGGGGGCTGGGGGCCCGGCGCCTGGAGCGGAGGCTGAAGGAGTCACTGCAGAACTGGTTCCGGGCTGAGTGTCTCATGGACTACGACCCACGGGGGAATCGGCTGGTGTGCATGGCCTGCGGCCGGGCACTGCCCAGCCTGCACTTGGACGACATCCGTGCTCACGTGCTGGAAGTGCACCCCAGCTCCCTAGGGCTCAGTGGCCCCCAGCGCAGTGCCCTGCTGCAGGCCTGGGGTGACCAGCCTGAGGCTCTGTCCGAGCTCACCCAGCCCTCACCAGACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCC ggatctctaagtgtggaggagaatcgttaatattttgttttaacaattagGCAAAGCCCCGGCTGGGGGGGGCTGCCGGCGCCAGCGTCGAGGGGTTCGAGGGGGGTCAGTGGCACCTCGGCGTCGACGCCTTGGAGCCTCCCGAAGGGCTGGAGGCAGCAGGGGGTTGGGGGCGCGGCGGTTGGAGCGGAGATTGAAGGAGTCACTACAGAACTGGTTCCGGGCGGAGTGTCTGATGGACTATGACCCACGGGGGAATCGGCTAGTGTGCATGGCCTGTGGCCGTGCACTGCCCAGCCTGCACCTGGATGACATACATGCTCATGTCTTGGAAGTGCATCCCAGCTCCCTTGGGCTCAGTGGCCCCCAGCGGAGTGCCCTCCTGCAGGCCTGGGGTGATCAACCTGAGGCCCTGTCTGAGCTTACTCAATCTTCACCAGGTAAGAGATGAGCACTCAGGTTTATTCAAATGGGGAGTCCCAGAGACTGG Alignment from GeneWise GCAAAGCCCCAGCTGGTGGGGGCTGCCGGCGCCAGCGGCGAGGGGTCCGAGGGGGCTCAGTGGCACCTCGGCGCCGGCGCCTCGCAGCCTCCCGAAGGGCTGGGGGCAGCAGGGGGCTGGGGGCCCGGCGCCTGGAGCGGAGGCTGAAGGAGTCACTGCAGAACTGGTTCCGGGCTGAGTGTCTCATGGACTACGACCCACGGGGGAATCGGCTGGTGTGCATGGCCTGCGGCCGGGCACTGCCCAGCCTGCACTTGGACGACATCCGTGCTCACGTGCTGGAAGTGCACCCCAGCTCCCTAGGGCTCAGTGGCCCCCAGCGCAGTGCCCTGCTGCAGGCCTGGGGTGACCAGCCTGAGGCTCTGTCCGAGCTCACCCAGCCCTCACCAG ggatctctaagtgtggaggagaatcgttaatattttgttttaacaattagGCAAAGCCCCGGCTGGGGGGGGCTGCCGGCGCCAGCGTCGAGGGGTTCGAGGGGGGTCAGTGGCACCTCGGCGTCGACGCCTTGGAGCCTCCCGAAGGGCTGGAGGCAGCAGGGGGTTGGGGGCGCGGCGGTTGGAGCGGAGATTGAAGGAGTCACTACAGAACTGGTTCCGGGCGGAGTGTCTGATGGACTATGACCCACGGGGGAATCGGCTAGTGTGCATGGCCTGTGGCCGTGCACTGCCCAGCCTGCACCTGGATGACATACATGCTCATGTCTTGGAAGTGCATCCCAGCTCCCTTGGGCTCAGTGGCCCCCAGCGGAGTGCCCTCCTGCAGGCCTGGGGTGATCAACCTGAGGCCCTGTCTGAGCTTACTCAATCTTCACCAGgtaagagatgagcactcaggtttattcaaatggggagtcccagagactgg #### 4430402I18Rik_ID6180_10 --> 1 - 0 Original Alignment gTTCCAGCCTTTTTCTCAGTCCACGTGGCAGAAGATCCCCGAGGGTGTACGAAGCCTTCTGACATCCCACCGAGCTCACCCAAAG gtagagtgttttgccatacttttatactctatttgcttttttcgaagaagaTTCCTGCCTTTTTCCCAGTCCACATGGCAGAAGATCCCTGAAGGAGTACGGAGCCTTCTGGCATCACATCGAGCTTACCCAAAAgtaagctggtctgctgggaataggttctggctgataagtgtgttaagcag Alignment from CESAR gTTCCAGCCTTTTTCTCAGTCCACGTGGCAGAAGATCCCCGAGGGTGTACGAAGCCTTCTGACATCCCACCGAGCTCACCCAAAG gtagagtgttttgccatacttttatactctatttgcttttttcgaagaagaTTCCTGCCTTTTTCCCAGTCCACATGGCAGAAGATCCCTGAAGGAGTACGGAGCCTTCTGGCATCACATCGAGCTTACCCAAAAgtaagctggtctgctgggaataggttctggctgataagtgtgttaagcag Alignment from Spaln_aa2Genome GTTCCAGCCTTTTTCTCAGTCCACGTGGCAGAAGATCCCCGAGGGTGTACGAAGCCTTCTGACATCCCACCGAGCTCACCCAAAG gtagagtgttttgccatacttttatactctatttgcttttttcgaagaagATTCCTGCCTTTTTCCCAGTCCACATGGCAGAAGATCCCTGAAGGAGTACGGAGCCTTCTGGCATCACATCGAGCTTACCCAAAAgtaagctggtctgctgggaataggttctggctgataagtgtgttaagcag Alignment from Spaln_nt2Genome GTTCCAGCCTTTTTCTCAGTCCACGTGGCAGAAGATCCCCGAGGGTGTACGAAGCCTTCTGACATCCCACCGAGCTCACCCAAAG gtagagtgttttgccatacttttatactctatttgcttttttcgaagaagATTCCTGCCTTTTTCCCAGTCCACATGGCAGAAGATCCCTGAAGGAGTACGGAGCCTTCTGGCATCACATCGAGCTTACCCAAAAgtaagctggtctgctgggaataggttctggctgataagtgtgttaagcag Alignment from Pairagon GTTCCAGCCTTTTTCTCAGTCCACGTGGCAGAAGATCCCCGAGGGTGTACGAAGCCTTCTGACATCCCACCGAGCTCACCCAAAG gtagagtgttttgccatacttttatactctatttgcttttttcgaagaagATTCCTGCCTTTTTCCCAGTCCACATGGCAGAAGATCCCTGAAGGAGTACGGAGCCTTCTGGCATCACATCGAGCTTACCCAAAAgtaagctggtctgctgggaataggttctggctgataagtgtgttaagcag Alignment from Exonerate_protein2genome GTTCCAGCCTTTTTCTCAGTCCACGTGGCAGAAGATCCCCGAGGGTGTACGAAGCCTTCTGACATCCCACCGAGCTCACCCAAAG gtagagtgttttgccatacttttatactctatttgcttttttcgaagaagATTCCTGCCTTTTTCCCAGTCCACATGGCAGAAGATCCCTGAAGGAGTACGGAGCCTTCTGGCATCACATCGAGCTTACCCAAAAgtaagctggtctgctgggaataggttctggctgataagtgtgttaagcag Alignment from Exonerate_coding2genome gtagagtgttttgccatacttttatactctatttgcttttttcgaagaagattcctgcctttttcccagtccacatggcagaagatccctgaaggagtacggagccttctggcatcacatcgagcttacccaaaagtaagctggtctgctgggaataggttctggctgataagtgtgttaagcag Alignment from GeneWise -AGGTTCCAGCCTTTTTCTCAGTCCACGTGGCAGAAGATCCCCGAGGGTGTACGAAGCCTTCTGACATCCCACCGAGCTCACCCAAAG gtagagtgttttgccatacttttatactctatttgcttttttcgaagAAGATTCCTGCCTTTTTCCCAGTCCACATGGCAGAAGATCCCTGAAGGAGTACGGAGCCTTCTGGCATCACATCGAGCTTACCCAAAAgtaagctggtctgctgggaataggttctggctgataagtgtgttaagcag #### 4430402I18Rik_ID6185_5 --> 0 - 0 Original Alignment GGCATTGCTCCCAAAATAGAGTTTTCTACAAGGACAGCCATCCTAGAATGTGTGTTCCCGTGTAAAAACAGATTCATTTGT acaccagcgattttggctacatcttatcatgccttccttcttattcccagGGCATTGCTCCTAAAATAGAGTTTTCTACTAGGACAGTCATCTTAGAATGTGTGTTCCCGTGTAAAAATAGATTCATCTGCgtacgctagccaggaagttttagcaattgatttgacataaacccctccac Alignment from CESAR GGCATTGCTCCCAAAATAGAGTTTTCTACAAGGACAGCCATCCTAGAATGTGTGTTCCCGTGTAAAAACAGATTCATTTGT acaccagcgattttggctacatcttatcatgccttccttcttattcccagGGCATTGCTCCTAAAATAGAGTTTTCTACTAGGACAGTCATCTTAGAATGTGTGTTCCCGTGTAAAAATAGATTCATCTGCgtacgctagccaggaagttttagcaattgatttgacataaacccctccac Alignment from Spaln_aa2Genome GGCATTGCTCCCAAAATAGAGTTTTCTACAAGGACAGCCATCCTAGAATGTGTGTTCCCGTGTAAAAACAGATTCATTTGT acaccagcgattttggctacatcttatcatgccttccttcttattcccagGGCATTGCTCCTAAAATAGAGTTTTCTACTAGGACAGTCATCTTAGAATGTGTGTTCCCGTGTAAAAATAGATTCATCTGCgtacgctagccaggaagttttagcaattgatttgacataaacccctccac Alignment from Spaln_nt2Genome GGCATTGCTCCCAAAATAGAGTTTTCTACAAGGACAGCCATCCTAGAATGTGTGTTCCCGTGTAAAAACAGATTCATTTGT acaccagcgattttggctacatcttatcatgccttccttcttattcccagGGCATTGCTCCTAAAATAGAGTTTTCTACTAGGACAGTCATCTTAGAATGTGTGTTCCCGTGTAAAAATAGATTCATCTGCgtacgctagccaggaagttttagcaattgatttgacataaacccctccac Alignment from Pairagon GGCATTGCTCCCAAAATAGAGTTTTCTACAAGGACAGCCATCCTAGAATGTGTGTTCCCGTGTAAAAACAGATTCATTTGT acaccagcgattttggctacatcttatcatgccttccttcttattcccagGGCATTGCTCCTAAAATAGAGTTTTCTACTAGGACAGTCATCTTAGAATGTGTGTTCCCGTGTAAAAATAGATTCATCTGCgtacgctagccaggaagttttagcaattgatttgacataaacccctccac Alignment from Exonerate_protein2genome GGCATTGCTCCCAAAATAGAGTTTTCTACAAGGACAGCCATCCTAGAATGTGTGTTCCCGTGTAAAAACAGATTCATTTGT acaccagcgattttggctacatcttatcatgccttccttcttattcccagGGCATTGCTCCTAAAATAGAGTTTTCTACTAGGACAGTCATCTTAGAATGTGTGTTCCCGTGTAAAAATAGATTCATCTGCgtacgctagccaggaagttttagcaattgatttgacataaacccctccac Alignment from Exonerate_coding2genome GGCATTGCTCCCAAAATAGAGTTTTCTACAAGGACAGCCATCCTAGAATGTGTGTTCCCGTGTAAAAACAGATTCATTTGT acaccagcgattttggctacatcttatcatgccttccttcttattcccagGGCATTGCTCCTAAAATAGAGTTTTCTACTAGGACAGTCATCTTAGAATGTGTGTTCCCGTGTAAAAATAGATTCATCTGCgtacgctagccaggaagttttagcaattgatttgacataaacccctccac Alignment from GeneWise GGCATTGCTCCCAAAATAGAGTTTTCTACAAGGACAGCCATCCTAGAATGTGTGTTCCCGTGTAAAAACAGATTCATTTGT acaccagcgattttggctacatcttatcatgccttccttcttattcccagGGCATTGCTCCTAAAATAGAGTTTTCTACTAGGACAGTCATCTTAGAATGTGTGTTCCCGTGTAAAAATAGATTCATCTGCgtacgctagccaggaagttttagcaattgatttgacataaacccctccac #### 4430402I18Rik_ID6188_2 --> 0 - 1 Original Alignment GTATTTGAAGAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTAGAAa gccaaagtgtatgttactaatggcataactgagagttctctctccaacagGGATTTGAGAAGGCAATAGATCCTGGAGCTGTTGCAGAACTTTTGGAGagtaagcacttaggagaaaacaaaaaagacccccctacaatctgccactct Alignment from CESAR GTATTTGAAGAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTAGAAa gccaaagtgtatgttactaatggcataactgagagttctctctccaacagGGATTTGAGAAGGCAATAGATCCTGGAGCTGTTGCAGAACTTTTGGAGagtaagcacttaggagaaaacaaaaaagacccccctacaatctgccactct Alignment from Spaln_aa2Genome GTATTTGAAGAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTAGAAA gccaaagtgtatgttactaatggcataactgagagttctctctccaacagGGATTTGAGAAGGCAATAGATCCTGGAGCTGTTGCAGAACTTTTGGAGAgtaagcacttaggagaaaacaaaaaagacccccctacaatctgccactct Alignment from Spaln_nt2Genome GTATTTGAAGAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTAGAAA gccaaagtgtatgttactaatggcataactgagagttctctctccaacagGGATTTGAGAAGGCAATAGATCCTGGAGCTGTTGCAGAACTTTTGGAGAgtaagcacttaggagaaaacaaaaaagacccccctacaatctgccactct Alignment from Pairagon GTATTTGAAGAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTAGAAA gccaaagtgtatgttactaatggcataactgagagttctctctccaacagGGATTTGAGAAGGCAATAGATCCTGGAGCTGTTGCAGAACTTTTGGAGAgtaagcacttaggagaaaacaaaaaagacccccctacaatctgccactct Alignment from Exonerate_protein2genome TTTGAAGAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTAGAAA gccaaagtgtatgttactaatggcataactgagagttctctctccaacagggaTTTGAGAAGGCAATAGATCCTGGAGCTGTTGCAGAACTTTTGGAGAgtaagcacttaggagaaaacaaaaaagacccccctacaatctgccactct Alignment from Exonerate_coding2genome TTTGAAGAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTAGAAA gccaaagtgtatgttactaatggcataactgagagttctctctccaacagggaTTTGAGAAGGCAATAGATCCTGGAGCTGTTGCAGAACTTTTGGAGAgtaagcacttaggagaaaacaaaaaagacccccctacaatctgccactct Alignment from GeneWise AGATTTGTAAAGGTATTTGAAGAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTAGAAA gccaaagtgtatgttactaatggcataactgagagttcTCTCTCCAACAGGGATTTGAGAAGGCAATAGATCCTGGAGCTGTTGCAGAACTTTTGGAGAgtaagcacttaggagaaaacaaaaaagacccccctacaatctgccactct #### 9130011E15Rik_ID9620_24 --> 0 - 0 Original Alignment GTACTAGAAGTAGTGCGAGCCAACTACGACACACTCACACTGAAGCTGCAAGATGGCCTGGACCAATATGAGCGCTACTCTGAGCAACACAAGGAGGCTGCCTTCTTCAAAGAGCTG gagatgtaggtctccaggccaaaaattttcctccctccattcctctgcagGTGCTAGAGGTAGTGCATGCTAATTATGACACCCTCACACTGAAGTTGCAGGATGGCCTTGATCATTATGAACGCTGCTCCGAGCCACACAAGGAGGCTGCCTTCTTCAGAGAGCTAgtgagaactatctctgcggttactgagagttctgtagatctacttattct Alignment from CESAR GTACTAGAAGTAGTGCGAGCCAACTACGACACACTCACACTGAAGCTGCAAGATGGCCTGGACCAATATGAGCGCTACTCTGAGCAACACAAGGAGGCTGCCTTCTTCAAAGAGCTG gagatgtaggtctccaggccaaaaattttcctccctccattcctctgcagGTGCTAGAGGTAGTGCATGCTAATTATGACACCCTCACACTGAAGTTGCAGGATGGCCTTGATCATTATGAACGCTGCTCCGAGCCACACAAGGAGGCTGCCTTCTTCAGAGAGCTAgtgagaactatctctgcggttactgagagttctgtagatctacttattct Alignment from Spaln_aa2Genome GTACTAGAAGTAGTGCGAGCCAACTACGACACACTCACACTGAAGCTGCAAGATGGCCTGGACCAATATGAGCGCTACTCTGAGCAACACAAGGAGGCTGCCTTCTTCAAAGAGCTG gagatgtaggtctccaggccaaaaattttcctccctccattcctctgcagGTGCTAGAGGTAGTGCATGCTAATTATGACACCCTCACACTGAAGTTGCAGGATGGCCTTGATCATTATGAACGCTGCTCCGAGCCACACAAGGAGGCTGCCTTCTTCAGAGAGCTAgtgagaactatctctgcggttactgagagttctgtagatctacttattct Alignment from Spaln_nt2Genome GTACTAGAAGTAGTGCGAGCCAACTACGACACACTCACACTGAAGCTGCAAGATGGCCTGGACCAATATGAGCGCTACTCTGAGCAACACAAGGAGGCTGCCTTCTTCAAAGAGCTG gagatgtaggtctccaggccaaaaattttcctccctccattcctctgcagGTGCTAGAGGTAGTGCATGCTAATTATGACACCCTCACACTGAAGTTGCAGGATGGCCTTGATCATTATGAACGCTGCTCCGAGCCACACAAGGAGGCTGCCTTCTTCAGAGAGCTAgtgagaactatctctgcggttactgagagttctgtagatctacttattct Alignment from Pairagon GTACTAGAAGTAGTGCGAGCCAACTACGACACACTCACACTGAAGCTGCAAGATGGCCTGGACCAATATGAGCGCTACTCTGAGCAACACAAGGAGGCTGCCTTCTTCAAAGAGCTG gagatgtaggtctccaggccaaaaattttcctccctccattcctctgcagGTGCTAGAGGTAGTGCATGCTAATTATGACACCCTCACACTGAAGTTGCAGGATGGCCTTGATCATTATGAACGCTGCTCCGAGCCACACAAGGAGGCTGCCTTCTTCAGAGAGCTAgtgagaactatctctgcggttactgagagttctgtagatctacttattct Alignment from Exonerate_protein2genome GTACTAGAAGTAGTGCGAGCCAACTACGACACACTCACACTGAAGCTGCAAGATGGCCTGGACCAATATGAGCGCTACTCTGAGCAACACAAGGAGGCTGCCTTCTTCAAAGAGCTG gagatgtaggtctccaggccaaaaattttcctccctccattcctctgcagGTGCTAGAGGTAGTGCATGCTAATTATGACACCCTCACACTGAAGTTGCAGGATGGCCTTGATCATTATGAACGCTGCTCCGAGCCACACAAGGAGGCTGCCTTCTTCAGAGAGCTAgtgagaactatctctgcggttactgagagttctgtagatctacttattct Alignment from Exonerate_coding2genome GTACTAGAAGTAGTGCGAGCCAACTACGACACACTCACACTGAAGCTGCAAGATGGCCTGGACCAATATGAGCGCTACTCTGAGCAACACAAGGAGGCTGCCTTCTTCAAAGAGCTG gagatgtaggtctccaggccaaaaattttcctccctccattcctctgcagGTGCTAGAGGTAGTGCATGCTAATTATGACACCCTCACACTGAAGTTGCAGGATGGCCTTGATCATTATGAACGCTGCTCCGAGCCACACAAGGAGGCTGCCTTCTTCAGAGAGCTAgtgagaactatctctgcggttactgagagttctgtagatctacttattct Alignment from GeneWise GTACTAGAAGTAGTGCGAGCCAACTACGACACACTCACACTGAAGCTGCAAGATGGCCTGGACCAATATGAGCGCTACTCTGAGCAACACAAGGAGGCTGCCTTCTTCAAAGAGCTG gagatgtaggtctccaggccaaaaattttcctccctccattcctctgcagGTGCTAGAGGTAGTGCATGCTAATTATGACACCCTCACACTGAAGTTGCAGGATGGCCTTGATCATTATGAACGCTGCTCCGAGCCACACAAGGAGGCTGCCTTCTTCAGAGAGCTAgtgagaactatctctgcggttactgagagttctgtagatctacttattct #### 9130011E15Rik_ID9650_19 --> 1 - 1 Original Alignment gCGGTGTGTCCAGGTAGTGCATAAACTGCTGTGTTACCAGAAGAAGTGTAGAGTTCGCCTGCATTATACCTGGCGGGAGCTCTGGTCAg tgtcgtttgtctgggttagctgtggtgctacatactttaaaatttaatagaCGTTGTGTGCAGATAGTCCATAAGTTGCTCTGTTACCAAAGGAGATGTAGAGTCCGTTTGCATTATGCCTGGTGTGAACTTTGGTCAggtattcgacaagtgggacctaaagtggacctgagggattgacagacctac Alignment from CESAR gCGGTGTGTCCAGGTAGTGCATAAACTGCTGTGTTACCAGAAGAAGTGTAGAGTTCGCCTGCATTATACCTGGCGGGAGCTCTGGTCAg tgtcgtttgtctgggttagctgtggtgctacatactttaaaatttaatagaCGTTGTGTGCAGATAGTCCATAAGTTGCTCTGTTACCAAAGGAGATGTAGAGTCCGTTTGCATTATGCCTGGTGTGAACTTTGGTCAggtattcgacaagtgggacctaaagtggacctgagggattgacagacctac Alignment from Spaln_aa2Genome GCGGTGTGTCCAGGTAGTGCATAAACTGCTGTGTTACCAGAAGAAGTGTAGAGTTCGCCTGCATTATACCTGGCGGGAGCTCTGGTCAG tgtcgtttgtctgggttagctgtggtgctacatactttaaaatttaatagACGTTGTGTGCAGATAGTCCATAAGTTGCTCTGTTACCAAAGGAGATGTAGAGTCCGTTTGCATTATGCCTGGTGTGAACTTTGGTCAGgtattcgacaagtgggacctaaagtggacctgagggattgacagacctac Alignment from Spaln_nt2Genome GCGGTGTGTCCAGGTAGTGCATAAACTGCTGTGTTACCAGAAGAAGTGTAGAGTTCGCCTGCATTATACCTGGCGGGAGCTCTGGTCAG tgtcgtttgtctgggttagctgtggtgctacatactttaaaatttaatagACGTTGTGTGCAGATAGTCCATAAGTTGCTCTGTTACCAAAGGAGATGTAGAGTCCGTTTGCATTATGCCTGGTGTGAACTTTGGTCAGgtattcgacaagtgggacctaaagtggacctgagggattgacagacctac Alignment from Pairagon GCGGTGTGTCCAGGTAGTGCATAAACTGCTGTGTTACCAGAAGAAGTGTAGAGTTCGCCTGCATTATACCTGGCGGGAGCTCTGGTCAG tgtcgtttgtctgggttagctgtggtgctacatactttaaaatttaatagACGTTGTGTGCAGATAGTCCATAAGTTGCTCTGTTACCAAAGGAGATGTAGAGTCCGTTTGCATTATGCCTGGTGTGAACTTTGGTCAGgtattcgacaagtgggacctaaagtggacctgagggattgacagacctac Alignment from Exonerate_protein2genome GCGGTGTGTCCAGGTAGTGCATAAACTGCTGTGTTACCAGAAGAAGTGTAGAGTTCGCCTGCATTATACCTGGCGGGAGCTCTGGTCAG tgtcgtttgtctgggttagctgtggtgctacatactttaaaatttaatagACGTTGTGTGCAGATAGTCCATAAGTTGCTCTGTTACCAAAGGAGATGTAGAGTCCGTTTGCATTATGCCTGGTGTGAACTTTGGTCAGgtattcgacaagtgggacctaaagtggacctgagggattgacagacctac Alignment from Exonerate_coding2genome GCGGTGTGTCCAGGTAGTGCATAAACTGCTGTGTTACCAGAAGAAGTGTAGAGTTCGCCTGCATTATACCTGGCGGGAGCTCTGGTCAG tgtcgtttgtctgggttagctgtggtgctacatactttaaaatttaatagACGTTGTGTGCAGATAGTCCATAAGTTGCTCTGTTACCAAAGGAGATGTAGAGTCCGTTTGCATTATGCCTGGTGTGAACTTTGGTCAGgtattcgacaagtgggacctaaagtggacctgagggattgacagacctac Alignment from GeneWise -CGGTGTGTCCAGGTAGTGCATAAACTGCTGTGTTACCAGAAGAAGTGTAGAGTTCGCCTGCATTATACCTGGCGGGAGCTCTGGTCAG tgtcgtttgtctgggttagctgtggtgctacatactttaaaatttaatagACGTTGTGTGCAGATAGTCCATAAGTTGCTCTGTTACCAAAGGAGATGTAGAGTCCGTTTGCATTATGCCTGGTGTGAACTTTGGTCAGgtattcgacaagtgggacctaaagtggacctgagggattgacagacctac #### 9130011E15Rik_ID9676_5 --> 0 - 0 Original Alignment AACTTGATGGAGAGTTTGGATTCATTACTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTGGTGACT ggccctaggtttgtcaatttgctctagatcgttcttgggctatgcttcagAACCTGATGGAAAGTTTGGATTCATTACTGTGCGCGGAAGGATCGGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGTTTAGTCACTgtaagggttgttgtgcagtaagaaaggggaatgtgttgttgtgcattaag Alignment from CESAR AACTTGATGGAGAGTTTGGATTCATTACTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTGGTGACT ggccctaggtttgtcaatttgctctagatcgttcttgggctatgcttcagAACCTGATGGAAAGTTTGGATTCATTACTGTGCGCGGAAGGATCGGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGTTTAGTCACTgtaagggttgttgtgcagtaagaaaggggaatgtgttgttgtgcattaag Alignment from Spaln_aa2Genome AACTTGATGGAGAGTTTGGATTCATTACTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTGGTGACT ggccctaggtttgtcaatttgctctagatcgttcttgggctatgcttcagAACCTGATGGAAAGTTTGGATTCATTACTGTGCGCGGAAGGATCGGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGTTTAGTCACTgtaagggttgttgtgcagtaagaaaggggaatgtgttgttgtgcattaag Alignment from Spaln_nt2Genome AACTTGATGGAGAGTTTGGATTCATTACTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTGGTGACT ggccctaggtttgtcaatttgctctagatcgttcttgggctatgcttcagAACCTGATGGAAAGTTTGGATTCATTACTGTGCGCGGAAGGATCGGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGTTTAGTCACTgtaagggttgttgtgcagtaagaaaggggaatgtgttgttgtgcattaag Alignment from Pairagon AACTTGATGGAGAGTTTGGATTCATTACTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTGGTGACT ggccctaggtttgtcaatttgctctagatcgttcttgggctatgcttcagAACCTGATGGAAAGTTTGGATTCATTACTGTGCGCGGAAGGATCGGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGTTTAGTCACTgtaagggttgttgtgcagtaagaaaggggaatgtgttgttgtgcattaag Alignment from Exonerate_protein2genome AACTTGATGGAGAGTTTGGATTCATTACTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTGGTGACT ggccctaggtttgtcaatttgctctagatcgttcttgggctatgcttcagAACCTGATGGAAAGTTTGGATTCATTACTGTGCGCGGAAGGATCGGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGTTTAGTCACTgtaagggttgttgtgcagtaagaaaggggaatgtgttgttgtgcattaag Alignment from Exonerate_coding2genome AACTTGATGGAGAGTTTGGATTCATTACTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTGGTGACT ggccctaggtttgtcaatttgctctagatcgttcttgggctatgcttcagAACCTGATGGAAAGTTTGGATTCATTACTGTGCGCGGAAGGATCGGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGTTTAGTCACTgtaagggttgttgtgcagtaagaaaggggaatgtgttgttgtgcattaag Alignment from GeneWise AACTTGATGGAGAGTTTGGATTCATTACTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTGGTGACT ggccctaggtttgtcaatttgctctagatcgttcttgggctatgcttcagAACCTGATGGAAAGTTTGGATTCATTACTGTGCGCGGAAGGATCGGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGTTTAGTCACTgtaagggttgttgtgcagtaagaaaggggaatgtgttgttgtgcattaag #### 9130011E15Rik_ID9678_3 --> 0 - 0 Original Alignment GTGAATTTGGAGTATCTGGAAGGCAAGCTAGAGTCCCTGGATGGGGAGGAGCTGATGAAGATCAAGGACAACATTAACTGCTTATTTCAACACTGCATCCAGGCTCTGGGGGAGGAGCATCCAATCCGAGTTGTCAACGCCTTGCAG ctgattggctgccctagaaggcttctggttttttgtctttacctctctagGTGAATTTGGAGTATCTGGAAGGCAAACTCAAGTCCCTGGGTGGGGAAGAGCTTATGAAGATCAAGGATAATATTAACTGTTTATTCCAACACTGCATTCAGGCTCTGGGGGAGGGGCATCCAATCCGAGTTGTCAATGCTTTACAGgtgagttatggaattctggctgtcctgaaaaatagtttgcttgcctaatc Alignment from CESAR GTGAATTTGGAGTATCTGGAAGGCAAGCTAGAGTCCCTGGATGGGGAGGAGCTGATGAAGATCAAGGACAACATTAACTGCTTATTTCAACACTGCATCCAGGCTCTGGGGGAGGAGCATCCAATCCGAGTTGTCAACGCCTTGCAG ctgattggctgccctagaaggcttctggttttttgtctttacctctctagGTGAATTTGGAGTATCTGGAAGGCAAACTCAAGTCCCTGGGTGGGGAAGAGCTTATGAAGATCAAGGATAATATTAACTGTTTATTCCAACACTGCATTCAGGCTCTGGGGGAGGGGCATCCAATCCGAGTTGTCAATGCTTTACAGgtgagttatggaattctggctgtcctgaaaaatagtttgcttgcctaatc Alignment from Spaln_aa2Genome GTGAATTTGGAGTATCTGGAAGGCAAGCTAGAGTCCCTGGATGGGGAGGAGCTGATGAAGATCAAGGACAACATTAACTGCTTATTTCAACACTGCATCCAGGCTCTGGGGGAGGAGCATCCAATCCGAGTTGTCAACGCCTTGCAG ctgattggctgccctagaaggcttctggttttttgtctttacctctctagGTGAATTTGGAGTATCTGGAAGGCAAACTCAAGTCCCTGGGTGGGGAAGAGCTTATGAAGATCAAGGATAATATTAACTGTTTATTCCAACACTGCATTCAGGCTCTGGGGGAGGGGCATCCAATCCGAGTTGTCAATGCTTTACAGgtgagttatggaattctggctgtcctgaaaaatagtttgcttgcctaatc Alignment from Spaln_nt2Genome GTGAATTTGGAGTATCTGGAAGGCAAGCTAGAGTCCCTGGATGGGGAGGAGCTGATGAAGATCAAGGACAACATTAACTGCTTATTTCAACACTGCATCCAGGCTCTGGGGGAGGAGCATCCAATCCGAGTTGTCAACGCCTTGCAG ctgattggctgccctagaaggcttctggttttttgtctttacctctctagGTGAATTTGGAGTATCTGGAAGGCAAACTCAAGTCCCTGGGTGGGGAAGAGCTTATGAAGATCAAGGATAATATTAACTGTTTATTCCAACACTGCATTCAGGCTCTGGGGGAGGGGCATCCAATCCGAGTTGTCAATGCTTTACAGgtgagttatggaattctggctgtcctgaaaaatagtttgcttgcctaatc Alignment from Pairagon GTGAATTTGGAGTATCTGGAAGGCAAGCTAGAGTCCCTGGATGGGGAGGAGCTGATGAAGATCAAGGACAACATTAACTGCTTATTTCAACACTGCATCCAGGCTCTGGGGGAGGAGCATCCAATCCGAGTTGTCAACGCCTTGCAG ctgattggctgccctagaaggcttctggttttttgtctttacctctctagGTGAATTTGGAGTATCTGGAAGGCAAACTCAAGTCCCTGGGTGGGGAAGAGCTTATGAAGATCAAGGATAATATTAACTGTTTATTCCAACACTGCATTCAGGCTCTGGGGGAGGGGCATCCAATCCGAGTTGTCAATGCTTTACAGgtgagttatggaattctggctgtcctgaaaaatagtttgcttgcctaatc Alignment from Exonerate_protein2genome GTGAATTTGGAGTATCTGGAAGGCAAGCTAGAGTCCCTGGATGGGGAGGAGCTGATGAAGATCAAGGACAACATTAACTGCTTATTTCAACACTGCATCCAGGCTCTGGGGGAGGAGCATCCAATCCGAGTTGTCAACGCCTTGCAG ctgattggctgccctagaaggcttctggttttttgtctttacctctctagGTGAATTTGGAGTATCTGGAAGGCAAACTCAAGTCCCTGGGTGGGGAAGAGCTTATGAAGATCAAGGATAATATTAACTGTTTATTCCAACACTGCATTCAGGCTCTGGGGGAGGGGCATCCAATCCGAGTTGTCAATGCTTTACAGgtgagttatggaattctggctgtcctgaaaaatagtttgcttgcctaatc Alignment from Exonerate_coding2genome GTGAATTTGGAGTATCTGGAAGGCAAGCTAGAGTCCCTGGATGGGGAGGAGCTGATGAAGATCAAGGACAACATTAACTGCTTATTTCAACACTGCATCCAGGCTCTGGGGGAGGAGCATCCAATCCGAGTTGTCAACGCCTTGCAG ctgattggctgccctagaaggcttctggttttttgtctttacctctctagGTGAATTTGGAGTATCTGGAAGGCAAACTCAAGTCCCTGGGTGGGGAAGAGCTTATGAAGATCAAGGATAATATTAACTGTTTATTCCAACACTGCATTCAGGCTCTGGGGGAGGGGCATCCAATCCGAGTTGTCAATGCTTTACAGgtgagttatggaattctggctgtcctgaaaaatagtttgcttgcctaatc Alignment from GeneWise GTGAATTTGGAGTATCTGGAAGGCAAGCTAGAGTCCCTGGATGGGGAGGAGCTGATGAAGATCAAGGACAACATTAACTGCTTATTTCAACACTGCATCCAGGCTCTGGGGGAGGAGCATCCAATCCGAGTTGTCAACGCCTTGCAG ctgattggctgccctagaaggcttctggttttttgtctttacctctctagGTGAATTTGGAGTATCTGGAAGGCAAACTCAAGTCCCTGGGTGGGGAAGAGCTTATGAAGATCAAGGATAATATTAACTGTTTATTCCAACACTGCATTCAGGCTCTGGGGGAGGGGCATCCAATCCGAGTTGTCAATGCTTTACAGgtgagttatggaattctggctgtcctgaaaaatagtttgcttgcctaatc #### 9130011E15Rik_ID9679_2 --> 0 - 0 Original Alignment ACGGAGGACCCCAGTAAGTGTAGTCCACGGTTTTGGGAGGAACTCTTCCTCATGAAG aagataattatccaaagggagtgattctagcaaaactttgctttctgcagACAGAGGACCCCAGCAAGTGTAGTCCACGGTTCTGGGAGGAACTATTCCTCATGAAGgtatttacaaatagtgtgaactctattcaatggaggagcgacacctccct Alignment from CESAR ACGGAGGACCCCAGTAAGTGTAGTCCACGGTTTTGGGAGGAACTCTTCCTCATGAAG aagataattatccaaagggagtgattctagcaaaactttgctttctgcagACAGAGGACCCCAGCAAGTGTAGTCCACGGTTCTGGGAGGAACTATTCCTCATGAAGgtatttacaaatagtgtgaactctattcaatggaggagcgacacctccct Alignment from Spaln_aa2Genome ACGGAGGACCCCAGTAAGTGTAGTCCACGGTTTTGGGAGGAACTCTTCCTCATGAAG aagataattatccaaagggagtgattctagcaaaactttgctttctgcagACAGAGGACCCCAGCAAGTGTAGTCCACGGTTCTGGGAGGAACTATTCCTCATGAAGgtatttacaaatagtgtgaactctattcaatggaggagcgacacctccct Alignment from Spaln_nt2Genome ACGGAGGACCCCAGTAAGTGTAGTCCACGGTTTTGGGAGGAACTCTTCCTCATGAAG aagataattatccaaagggagtgattctagcaaaactttgctttctgcagACAGAGGACCCCAGCAAGTGTAGTCCACGGTTCTGGGAGGAACTATTCCTCATGAAGgtatttacaaatagtgtgaactctattcaatggaggagcgacacctccct Alignment from Pairagon ACGGAGGACCCCAGTAAGTGTAGTCCACGGTTTTGGGAGGAACTCTTCCTCATGAAG aagataattatccaaagggagtgattctagcaaaactttgctttctgcagACAGAGGACCCCAGCAAGTGTAGTCCACGGTTCTGGGAGGAACTATTCCTCATGAAGgtatttacaaatagtgtgaactctattcaatggaggagcgacacctccct Alignment from Exonerate_protein2genome ACGGAGGACCCCAGTAAGTGTAGTCCACGGTTTTGGGAGGAACTCTTCCTCATGAAG aagataattatccaaagggagtgattctagcaaaactttgctttctgcagACAGAGGACCCCAGCAAGTGTAGTCCACGGTTCTGGGAGGAACTATTCCTCATGAAGgtatttacaaatagtgtgaactctattcaatggaggagcgacacctccct Alignment from Exonerate_coding2genome ACGGAGGACCCCAGTAAGTGTAGTCCACGGTTTTGGGAGGAACTCTTCCTCATGAAG aagataattatccaaagggagtgattctagcaaaactttgctttctgcagACAGAGGACCCCAGCAAGTGTAGTCCACGGTTCTGGGAGGAACTATTCCTCATGAAGgtatttacaaatagtgtgaactctattcaatggaggagcgacacctccct Alignment from GeneWise ACGGAGGACCCCAGTAAGTGTAGTCCACGGTTTTGGGAGGAACTCTTCCTCATGAAG aagataattatccaaagggagtgattctagcaaaactttgctttctgcagACAGAGGACCCCAGCAAGTGTAGTCCACGGTTCTGGGAGGAACTATTCCTCATGAAGgtatttacaaatagtgtgaactctattcaatggaggagcgacacctccct #### A430093F15Rik_ID3006_2 --> 0 - 2 Original Alignment GGAAATATGGCCCGAGGCAGATGGCGAGAAAGCTGCGCTGGCGGCCAGAAGGGATCGGAGCCAGCTGGAGCCACGAGTCAGGGCAGACTCTCAAAGCTCAGTTTCCTTGGAtg tgggatgcaaaaataactaggaaataaggttttcaccttcgtgtccatagGGGAATATGACTCGGGGTAGATGGCATGAAAGCTGTGCTGGTGGCCAAAAGGGGTCAGAGCCAGCTGGAGCAACAAGCCCA---AGGCTTTCG---CTAAGTTTCCTTGGAtggtgagtgtgcatgaaaaggaaatttggagctatgccatgaccttcgtact Alignment from CESAR GGAAATATGGCCCGAGGCAGATGGCGAGAAAGCTGCGCTGGCGGCCAGAAGGGATCGGAGCCAGCTGGAGCCACGAGTCAGGGCAGACTCTCAAAGCTCAGTTTCCTTGGAtg tgggatgcaaaaataactaggaaataaggttttcaccttcgtgtccatagGGGAATATGACTCGGGGTAGATGGCATGAAAGCTGTGCTGGTGGCCAAAAGGGGTCAGAGCCAGCTGGAGCAACAAGCCCA---AGGCTTTCG---CTAAGTTTCCTTGGAtggtgagtgtgcatgaaaaggaaatttggagctatgccatgaccttcgtact Alignment from Spaln_aa2Genome GGAAATATGGCCCGAGGCAGATGGCGAGAAAGCTGCGCTGGCGGCCAGAAGGGATCGGAGCCAGCTGGAGCCACGAGTCAGGGCAGACTCTCAAAGCTCAGTTTCCTTGGATG tgggatgcaaaaataactaggaaataaggttttcaccttcgtgtccatagGGGAATATGACTCGGGGTAGATGGCATGAAAGCTGTGCTGGTGGCCAAAAGGGGTCAGAGCCAGCTGGAGCAACAAGCCCA---AGGCTTTCG---CTAAGTTTCCTTGGATGgtgagtgtgcatgaaaaggaaatttggagctatgccatgaccttcgtact Alignment from Spaln_nt2Genome GGAAATATGGCCCGAGGCAGATGGCGAGAAAGCTGCGCTGGCGGCCAGAAGGGATCGGAGCCAGCTGGAGCCACGAGTCAGGGCAGACTCTCAAAGCTCAGTTTCCTTGGATG tgggatgcaaaaataactaggaaataaggttttcaccttcgtgtccatagGGGAATATGACTCGGGGTAGATGGCATGAAAGCTGTGCTGGTGGCCAAAAGGGGTCAGAGCCAGCTGGAGCAACAAGCC---CAAGGCTTTC---GCTAAGTTTCCTTGGATGgtgagtgtgcatgaaaaggaaatttggagctatgccatgaccttcgtact Alignment from Pairagon GGAAATATGGCCCGAGGCAGATGGCGAGAAAGCTGCGCTGGCGGCCAGAAGGGATCGGAGCCAGCTGGAGCCACGAGTCAGGGCAGACTCTCAAAGCTCA-------------GTTTCCTTGGATG tgggatgcaaaaataactaggaaataaggttttcaccttcgtgtccatagGGGAATATGACTCGGGGTAGATGGCATGAAAGCTGTGCTGGTGGCCAAAAGGGGTCAGAGCCAGCTGGAGCAAC-------------------AAGCCCAAGGCTTTCGCTAAGTTTCCTTGGATGgtgagtgtgcatgaaaaggaaatttggagctatgccatgaccttcgtact Alignment from Exonerate_protein2genome GGAAATATGGCCCGAGGCAGATGGCGAGAAAGCTGCGCTGGCGGCCAGAAGGGATCGGAGCCAGCTGGAGCCACGAGTCAGGGCAGACTCTCAAAGCTCAGTTTCCTTGGATG tgggatgcaaaaataactaggaaataaggttttcaccttcgtgtccatagGGGAATATGACTCGGGGTAGATGGCATGAAAGCTGTGCTGGTGGCCAAAAGGGGTCAGAGCCAGCTGGAGCAACAAGCCCA---AGGCTTTCG---CTAAGTTTCCTTGGATGgtgagtgtgcatgaaaaggaaatttggagctatgccatgaccttcgtact Alignment from Exonerate_coding2genome GGAAATATGGCCCGAGGCAGATGGCGAGAAAGCTGCGCTGGCGGCCAGAAGGGATCGGAGCCAGCTGGAGCCACGAGTCAGGGCAGACTCTCAAAGCTCAGTTTCCTTGGATG tgggatgcaaaaataactaggaaataaggttttcaccttcgtgtccatagGGGAATATGACTCGGGGTAGATGGCATGAAAGCTGTGCTGGTGGCCAAAAGGGGTCAGAGCCAGCTGGAGCAACAAGCCCA---AGGCTTTCG---CTAAGTTTCCTTGGATGgtgagtgtgcatgaaaaggaaatttggagctatgccatgaccttcgtact Alignment from GeneWise GGAAATATGGCCCGAGGCAGATGGCGAGAAAGCTGCGCTGGCGGCCAGAAGGGATCGGAGCCAGCTGGAGCCACGAGTCAGGGCAGACTCTCAAAGCTCAGTTTCCTTGGATG tgggatgcaaaaataactaggaaataaggttttcaccttcgtgtccatagGGGAATATGACTCGGGGTAGATGGCATGAAAGCTGTGCTGGTGGCCAAAAGGGGTCAGAGCCAGCTGGAGCAACAAGCCCA---AGGCTTTCG---CTAAGTTTCCTTGGATGgtgagtgtgcatgaaaaggaaatttggagctatgccatgaccttcgtact #### A630007B06Rik_ID12183_14 --> 1 - 0 Original Alignment aATAATTCAGAGTTACGTTTTACGAGAAGAATCAGGCACACTTTCCTCAGAAGCATCTGATTTTAACAAAGTGCATTTGAGTAGACGCGGTGGCATCATGGCGTCCTTGTACACATCCCATCCCGCTGACAGCGGGCTAACACTGGAGCTCTCTTTGGAAATCAACCGAAAATTACAGGCTGTTTTGGAAGATACATTGCTAAAAAATATTACTTTGAAG gtgccataatgtgccagagcagcaacagaattttattctttttttttaaggATAATACATAGTTACATTCTCTGGGAGGAATCAGGTACACTATCATCAGAGGCATCAGACTATAACAAA---CATTTGAGCAGACATGGTGGCATCATGGCTTCATTGTACACATCCCATCCTGCTGACAGTGGATTAACATTGGAGCTCTCATTGGAGATCAAT---CAATTACAAGCTGTGTTAGAAGCCACATTGCTGAAGAATATTACTTTGAAGgtgaggaatcccatgtagccatttatgtacattttgtgactttccttctt Alignment from CESAR aATAATTCAGAGTTACGTTTTACGAGAAGAATCAGGCACACTTTCCTCAGAAGCATCTGATTTTAACAAAGTGCATTTGAGTAGACGCGGTGGCATCATGGCGTCCTTGTACACATCCCATCCCGCTGACAGCGGGCTAACACTGGAGCTCTCTTTGGAAATCAACCGAAAATTACAGGCTGTTTTGGAAGATACATTGCTAAAAAATATTACTTTGAAG gtgccataatgtgccagagcagcaacagaattttattctttttttttaaggATAATACATAGTTACATTCTCTGGGAGGAATCAGGTACACTATCATCAGAGGCATCAGACTATAACAAA---CATTTGAGCAGACATGGTGGCATCATGGCTTCATTGTACACATCCCATCCTGCTGACAGTGGATTAACATTGGAGCTCTCATTGGAGATCAATCAA---TTACAAGCTGTGTTAGAAGCCACATTGCTGAAGAATATTACTTTGAAGgtgaggaatcccatgtagccatttatgtacattttgtgactttccttctt Alignment from Spaln_aa2Genome AATAATTCAGAGTTACGTTTTACGAGAAGAATCAGGCACACTTTCCTCAGAAGCATCTGATTTTAACAAAGTGCATTTGAGTAGACGCGGTGGCATCATGGCGTCCTTGTACACATCCCATCCCGCTGACAGCGGGCTAACACTGGAGCTCTCTTTGGAAATCAACCGAAAATTACAGGCTGTTTTGGAAGATACATTGCTAAAAAATATTACTTTGAAG gtgccataatgtgccagagcagcaacagaattttattctttttttttaagGATAATACATAGTTACATTCTCTGGGAGGAATCAGGTACACTATCATCAGAGGCATCAGACTATAACAAA---CATTTGAGCAGACATGGTGGCATCATGGCTTCATTGTACACATCCCATCCTGCTGACAGTGGATTAACATTGGAGCTCTCATTGGAGATCAAT---CAATTACAAGCTGTGTTAGAAGCCACATTGCTGAAGAATATTACTTTGAAGgtgaggaatcccatgtagccatttatgtacattttgtgactttccttctt Alignment from Spaln_nt2Genome AATAATTCAGAGTTACGTTTTACGAGAAGAATCAGGCACACTTTCCTCAGAAGCATCTGATTTTAACAAAGTGCATTTGAGTAGACGCGGTGGCATCATGGCGTCCTTGTACACATCCCATCCCGCTGACAGCGGGCTAACACTGGAGCTCTCTTTGGAAATCAACCGAAAATTACAGGCTGTTTTGGAAGATACATTGCTAAAAAATATTACTTTGAAG gtgccataatgtgccagagcagcaacagaattttattctttttttttaagGATAATACATAGTTACATTCTCTGGGAGGAATCAGGTACACTATCATCAGAGGCATCAGACTATAACAAA---CATTTGAGCAGACATGGTGGCATCATGGCTTCATTGTACACATCCCATCCTGCTGACAGTGGATTAACATTGGAGCTCTCATTGGAGATCAATC---AATTACAAGCTGTGTTAGAAGCCACATTGCTGAAGAATATTACTTTGAAGgtgaggaatcccatgtagccatttatgtacattttgtgactttccttctt Alignment from Pairagon AATAATTCAGAGTTACGTTTTACGAGAAGAATCAGGCACACTTTCCTCAGAAGCATCTGATTTTAACAAAGTGCATTTGAGTAGACGCGGTGGCATCATGGCGTCCTTGTACACATCCCATCCCGCTGACAGCGGGCTAACACTGGAGCTCTCTTTGGAAATCAACCGAAAATTACAGGCTGTTTTGGAAGATACATTGCTAAAAAATATTACTTTGAAG gtgccataatgtgccagagcagcaacagaattttattctttttttttaagGATAATACATAGTTACATTCTCTGGGAGGAATCAGGTACACTATCATCAGAGGCATCAGACTATAACAAA---CATTTGAGCAGACATGGTGGCATCATGGCTTCATTGTACACATCCCATCCTGCTGACAGTGGATTAACATTGGAGCTCTCATTGGAGATCAATC---AATTACAAGCTGTGTTAGAAGCCACATTGCTGAAGAATATTACTTTGAAGgtgaggaatcccatgtagccatttatgtacattttgtgactttccttctt Alignment from Exonerate_protein2genome AATAATTCAGAGTTACGTTTTACGAGAAGAATCAGGCACACTTTCCTCAGAAGCATCTGATTTTAACAAAGTGCATTTGAGTAGACGCGGTGGCATCATGGCGTCCTTGTACACATCCCATCCCGCTGACAGCGGGCTAACACTGGAGCTCTCTTTGGAAATCAACCGAAAATTACAGGCTGTTTTGGAAGATACATTGCTAAAAAATATTACTTTGAAG gtgccataatgtgccagagcagcaacagaattttattctttttttttaagGATAATACATAGTTACATTCTCTGGGAGGAATCAGGTACACTATCATCAGAGGCATCAGACTATAACAAA---CATTTGAGCAGACATGGTGGCATCATGGCTTCATTGTACACATCCCATCCTGCTGACAGTGGATTAACATTGGAGCTCTCATTGGAGATCAAT---CAATTACAAGCTGTGTTAGAAGCCACATTGCTGAAGAATATTACTTTGAAGgtgaggaatcccatgtagccatttatgtacattttgtgactttccttctt Alignment from Exonerate_coding2genome AATAATTCAGAGTTACGTTTTACGAGAAGAATCAGGCACACTTTCCTCAGAAGCATCTGATTTTAACAAAGTGCATTTGAGTAGACGCGGTGGCATCATGGCGTCCTTGTACACATCCCATCCCGCTGACAGCGGGCTAACACTGGAGCTCTCTTTGGAAATCAACCGAAAATTACAGGCTGTTTTGGAAGATACATTGCTAAAAAATATTACTTTGAAG gtgccataatgtgccagagcagcaacagaattttattctttttttttaagGATAATACATAGTTACATTCTCTGGGAGGAATCAGGTACACTATCATCAGAGGCATCAGACTATAACAAA---CATTTGAGCAGACATGGTGGCATCATGGCTTCATTGTACACATCCCATCCTGCTGACAGTGGATTAACATTGGAGCTCTCATTGGAGATCAAT---CAATTACAAGCTGTGTTAGAAGCCACATTGCTGAAGAATATTACTTTGAAGgtgaggaatcccatgtagccatttatgtacattttgtgactttccttctt Alignment from GeneWise AATAATTCAGAGTTACGTTTTACGAGAAGAATCAGGCACACTTTCCTCAGAAGCATCTGATTTTAACAAAGTGCATTTGAGTAGACGCGGTGGCATCATGGCGTCCTTGTACACATCCCATCCCGCTGACAGCGGGCTAACACTGGAGCTCTCTTTGGAAATCAACCGAAAATTACAGGCTGTTTTGGAAGATACATTGCTAAAAAATATTACTTTGAAG gtgccataatgtgccagagcagcaacagaattttattctttttttttaagGATAATACATAGTTACATTCTCTGGGAGGAATCAGGTACACTATCATCAGAGGCATCAGACTATAACAAA---CATTTGAGCAGACATGGTGGCATCATGGCTTCATTGTACACATCCCATCCTGCTGACAGTGGATTAACATTGGAGCTCTCATTGGAGATCAATCAA---TTACAAGCTGTGTTAGAAGCCACATTGCTGAAGAATATTACTTTGAAGgtgaggaatcccatgtagccatttatgtacattttgtgactttccttctt #### A630007B06Rik_ID12189_8 --> 0 - 0 Original Alignment ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG gaccaaatcccatctatatccctggcaagctttgatttgttttgggacagATGCATCATGCCAAAATAAAGGAGCTGGAAGATCTCAAGAGGACATTTAAGGAGGGCATGGATGAATTGCAGACATTGAGAACGAAGgtatgtaaagggaacaaaggtacgcaactagcgtctggtagatttctgtg Alignment from CESAR ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG gaccaaatcccatctatatccctggcaagctttgatttgttttgggacagATGCATCATGCCAAAATAAAGGAGCTGGAAGATCTCAAGAGGACATTTAAGGAGGGCATGGATGAATTGCAGACATTGAGAACGAAGgtatgtaaagggaacaaaggtacgcaactagcgtctggtagatttctgtg Alignment from Spaln_aa2Genome ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG gaccaaatcccatctatatccctggcaagctttgatttgttttgggacagATGCATCATGCCAAAATAAAGGAGCTGGAAGATCTCAAGAGGACATTTAAGGAGGGCATGGATGAATTGCAGACATTGAGAACGAAGgtatgtaaagggaacaaaggtacgcaactagcgtctggtagatttctgtg Alignment from Spaln_nt2Genome ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG gaccaaatcccatctatatccctggcaagctttgatttgttttgggacagATGCATCATGCCAAAATAAAGGAGCTGGAAGATCTCAAGAGGACATTTAAGGAGGGCATGGATGAATTGCAGACATTGAGAACGAAGgtatgtaaagggaacaaaggtacgcaactagcgtctggtagatttctgtg Alignment from Pairagon ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG gaccaaatcccatctatatccctggcaagctttgatttgttttgggacagATGCATCATGCCAAAATAAAGGAGCTGGAAGATCTCAAGAGGACATTTAAGGAGGGCATGGATGAATTGCAGACATTGAGAACGAAGgtatgtaaagggaacaaaggtacgcaactagcgtctggtagatttctgtg Alignment from Exonerate_protein2genome ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG gaccaaatcccatctatatccctggcaagctttgatttgttttgggacagATGCATCATGCCAAAATAAAGGAGCTGGAAGATCTCAAGAGGACATTTAAGGAGGGCATGGATGAATTGCAGACATTGAGAACGAAGgtatgtaaagggaacaaaggtacgcaactagcgtctggtagatttctgtg Alignment from Exonerate_coding2genome ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG gaccaaatcccatctatatccctggcaagctttgatttgttttgggacagATGCATCATGCCAAAATAAAGGAGCTGGAAGATCTCAAGAGGACATTTAAGGAGGGCATGGATGAATTGCAGACATTGAGAACGAAGgtatgtaaagggaacaaaggtacgcaactagcgtctggtagatttctgtg Alignment from GeneWise ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG gaccaaatcccatctatatccctggcaagctttgatttgttttgggacagATGCATCATGCCAAAATAAAGGAGCTGGAAGATCTCAAGAGGACATTTAAGGAGGGCATGGATGAATTGCAGACATTGAGAACGAAGgtatgtaaagggaacaaaggtacgcaactagcgtctggtagatttctgtg #### A630007B06Rik_ID12191_6 --> 0 - 0 Original Alignment GAAACCAAAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGGAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGACCTATCAG actcacattttgactactacctcagaccaatggctttcttttaattgaagGAAACCACAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGAAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGCCCTATCAGgtatgtttgcttgtaccaggagtatttcagaagaggaagtagccgccgac Alignment from CESAR GAAACCAAAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGGAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGACCTATCAG actcacattttgactactacctcagaccaatggctttcttttaattgaagGAAACCACAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGAAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGCCCTATCAGgtatgtttgcttgtaccaggagtatttcagaagaggaagtagccgccgac Alignment from Spaln_aa2Genome GAAACCAAAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGGAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGACCTATCAG actcacattttgactactacctcagaccaatggctttcttttaattgaagGAAACCACAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGAAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGCCCTATCAGgtatgtttgcttgtaccaggagtatttcagaagaggaagtagccgccgac Alignment from Spaln_nt2Genome GAAACCAAAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGGAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGACCTATCAG actcacattttgactactacctcagaccaatggctttcttttaattgaagGAAACCACAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGAAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGCCCTATCAGgtatgtttgcttgtaccaggagtatttcagaagaggaagtagccgccgac Alignment from Pairagon GAAACCAAAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGGAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGACCTATCAG actcacattttgactactacctcagaccaatggctttcttttaattgaagGAAACCACAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGAAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGCCCTATCAGgtatgtttgcttgtaccaggagtatttcagaagaggaagtagccgccgac Alignment from Exonerate_protein2genome GAAACCAAAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGGAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGACCTATCAG actcacattttgactactacctcagaccaatggctttcttttaattgaagGAAACCACAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGAAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGCCCTATCAGgtatgtttgcttgtaccaggagtatttcagaagaggaagtagccgccgac Alignment from Exonerate_coding2genome GAAACCAAAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGGAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGACCTATCAG actcacattttgactactacctcagaccaatggctttcttttaattgaagGAAACCACAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGAAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGCCCTATCAGgtatgtttgcttgtaccaggagtatttcagaagaggaagtagccgccgac Alignment from GeneWise GAAACCAAAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGGAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGACCTATCAG actcacattttgactactacctcagaccaatggctttcttttaattgaagGAAACCACAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGAAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGCCCTATCAGgtatgtttgcttgtaccaggagtatttcagaagaggaagtagccgccgac #### A630007B06Rik_ID12192_5 --> 0 - 0 Original Alignment GAAGGTGAAACAACTAGACTCATCAGAGAAATAGAGAAATTAAAGGAGGAGATGAATTCTCAAGTCATTAAAGTAAAGTGGGCGCAAAACAAGTTAAAAGCTGAAATGGACTCACACAAG caagagcaaccattgggtataatgtgctattgtcttgattttcttgccagGAAGGTGAAATAACTAGACTCATTAGAGAGATAGAGAAATTAAAAGAAGAG---AATTCTCAAGTCATAAAAGTCAAATGGGCACAGAACAAATTAAAA---------GAGTCCCATAAGgtaagttaagtagtcaaaagtatccagcagcttctgcagaacactgcccc Alignment from CESAR GAAGGTGAAACAACTAGACTCATCAGAGAAATAGAGAAATTAAAGGAGGAGATGAATTCTCAAGTCATTAAAGTAAAGTGGGCGCAAAACAAGTTAAAAGCTGAAATGGACTCACACAAG caagagcaaccattgggtataatgtgctattgtcttgattttcttgccagGAAGGTGAAATAACTAGACTCATTAGAGAGATAGAGAAATTAAAAGAAGAG---AATTCTCAAGTCATAAAAGTCAAATGGGCACAGAACAAATTAAAA---------GAGTCCCATAAGgtaagttaagtagtcaaaagtatccagcagcttctgcagaacactgcccc Alignment from Spaln_aa2Genome GAAGGTGAAACAACTAGACTCATCAGAGAAATAGAGAAATTAAAGGAGGAGATGAATTCTCAAGTCATTAAAGTAAAGTGGGCGCAAAACAAGTTAAAAGCTGAAATGGACTCACACAAG caagagcaaccattgggtataatgtgctattgtcttgattttcttgccagGAAGGTGAAATAACTAGACTCATTAGAGAGATAGAGAAATTAAAAGAAGAG---AATTCTCAAGTCATAAAAGTCAAATGGGCACAGAACAAATTAAAA---------GAGTCCCATAAGgtaagttaagtagtcaaaagtatccagcagcttctgcagaacactgcccc Alignment from Spaln_nt2Genome GAAGGTGAAACAACTAGACTCATCAGAGAAATAGAGAAATTAAAGGAGGAGATGAATTCTCAAGTCATTAAAGTAAAGTGGGCGCAAAACAAGTTAAAAG---CTGAAATG caagagcaaccattgggtataatgtgctattgtcttgattttcttgccagGAAGGTGAAATAACTAGACTCATTAGAGAGATAGAGAAATTAAAAGAAGA---GAATTCTCAAGTCATAAAAGTCAAATGGGCACAGAACAAATTAAAAGAGTCCCATAAGgtaagttaagtagtcaaaagtatccagcagcttctgcagaacactgcccc Alignment from Pairagon GAAGGTGAAACAACTAGACTCATCAGAGAAATAGAGAAATTAAAGGAGGAGATGAATTCTCAAGTCATTAAAGTAAAGTGGGCGCAAAACAAGTTAAAAGCTGAAATGGACTCACACAAG caagagcaaccattgggtataatgtgctattgtcttgattttcttgccagGAAGGTGAAATAACTAGACTCATTAGAGAGATAGAGAAATTAAAAGAAGA---GAATTCTCAAGTCATAAAAGTCAAATGGGCACAGAACAAATTAAAA---------GAGTCCCATAAGgtaagttaagtagtcaaaagtatccagcagcttctgcagaacactgcccc Alignment from Exonerate_protein2genome GAAGGTGAAACAACTAGACTCATCAGAGAAATAGAGAAATTAAAGGAGGAGATGAATTCTCAAGTCATTAAAGTAAAGTGGGCGCAAAACAAGTTAAAAGCTGAAATGGAC caagagcaaccattgggtataatgtgctattgtcttgattttcttgccagGAAGGTGAAATAACTAGACTCATTAGAGAGATAGAGAAATTAAAAGAAGAG---AATTCTCAAGTCATAAAAGTCAAATGGGCACAGAACAAATTAAAAGAGTCCCATAAGgtaagttaagtagtcaaaagtatccagcagcttctgcagaacactgcccc Alignment from Exonerate_coding2genome GAAGGTGAAACAACTAGACTCATCAGAGAAATAGAGAAATTAAAGGAGGAGATGAATTCTCAAGTCATTAAAGTAAAGTGGGCGCAAAACAAGTTAAAAGCTGAAATGGAC caagagcaaccattgggtataatgtgctattgtcttgattttcttgccagGAAGGTGAAATAACTAGACTCATTAGAGAGATAGAGAAATTAAAAGAAGAG---AATTCTCAAGTCATAAAAGTCAAATGGGCACAGAACAAATTAAAAGAGTCCCATAAGgtaagttaagtagtcaaaagtatccagcagcttctgcagaacactgcccc Alignment from GeneWise GAAGGTGAAACAACTAGACTCATCAGAGAAATAGAGAAATTAAAGGAGGAGATGAATTCTCAAGTCATTAAAGTAAAGTGGGCGCAAAACAAGTTAAAAGCTGAAATGGACTCACACAAG caagagcaaccattgggtataatgtgctattgtcttgattttcttgccagGAAGGTGAAATAACTAGACTCATTAGAGAGATAGAGAAATTAAAAGAAGAG---AATTCTCAAGTCATAAAAGTCAAATGGGCACAGAACAAATTAAAA---------GAGTCCCATAAGgtaagttaagtagtcaaaagtatccagcagcttctgcagaacactgcccc #### A630007B06Rik_ID12195_2 --> 1 - 0 Original Alignment gTTAATTAAAGAAAATAAGAATCATCAGGAACTTATCTTAAACATTTGTTCAGAAAAAGACAGTTTAAGAGAAGAACTGAGAAAAAGGACAGAAACAGAGAAGCAGCATATGAACACAATAAAGCAG agatgtatccatttgcagataattcatataatgctggtcaccttccgcaggTTAATTAAAGAAAATAAGAATCATCAGAAACTCATCTTAAACATCTGCTCAGAAAAAGACAGTTTGATAGAAGAACTGAGAAAGAGGACTGAAACAGAGAAGCAACATATGAATACAATAAAGCAAgtgagtctacccagtttagattaagttattccatatattagccagaaaga Alignment from CESAR gTTAATTAAAGAAAATAAGAATCATCAGGAACTTATCTTAAACATTTGTTCAGAAAAAGACAGTTTAAGAGAAGAACTGAGAAAAAGGACAGAAACAGAGAAGCAGCATATGAACACAATAAAGCAG agatgtatccatttgcagataattcatataatgctggtcaccttccgcaggTTAATTAAAGAAAATAAGAATCATCAGAAACTCATCTTAAACATCTGCTCAGAAAAAGACAGTTTGATAGAAGAACTGAGAAAGAGGACTGAAACAGAGAAGCAACATATGAATACAATAAAGCAAgtgagtctacccagtttagattaagttattccatatattagccagaaaga Alignment from Spaln_aa2Genome GTTAATTAAAGAAAATAAGAATCATCAGGAACTTATCTTAAACATTTGTTCAGAAAAAGACAGTTTAAGAGAAGAACTGAGAAAAAGGACAGAAACAGAGAAGCAGCATATGAACACAATAAAGCAG agatgtatccatttgcagataattcatataatgctggtcaccttccgcagGTTAATTAAAGAAAATAAGAATCATCAGAAACTCATCTTAAACATCTGCTCAGAAAAAGACAGTTTGATAGAAGAACTGAGAAAGAGGACTGAAACAGAGAAGCAACATATGAATACAATAAAGCAAgtgagtctacccagtttagattaagttattccatatattagccagaaaga Alignment from Spaln_nt2Genome GTTAATTAAAGAAAATAAGAATCATCAGGAACTTATCTTAAACATTTGTTCAGAAAAAGACAGTTTAAGAGAAGAACTGAGAAAAAGGACAGAAACAGAGAAGCAGCATATGAACACAATAAAGCAG agatgtatccatttgcagataattcatataatgctggtcaccttccgcagGTTAATTAAAGAAAATAAGAATCATCAGAAACTCATCTTAAACATCTGCTCAGAAAAAGACAGTTTGATAGAAGAACTGAGAAAGAGGACTGAAACAGAGAAGCAACATATGAATACAATAAAGCAAgtgagtctacccagtttagattaagttattccatatattagccagaaaga Alignment from Pairagon GTTAATTAAAGAAAATAAGAATCATCAGGAACTTATCTTAAACATTTGTTCAGAAAAAGACAGTTTAAGAGAAGAACTGAGAAAAAGGACAGAAACAGAGAAGCAGCATATGAACACAATAAAGCAG agatgtatccatttgcagataattcatataatgctggtcaccttccgcagGTTAATTAAAGAAAATAAGAATCATCAGAAACTCATCTTAAACATCTGCTCAGAAAAAGACAGTTTGATAGAAGAACTGAGAAAGAGGACTGAAACAGAGAAGCAACATATGAATACAATAAAGCAAgtgagtctacccagtttagattaagttattccatatattagccagaaaga Alignment from Exonerate_protein2genome GTTAATTAAAGAAAATAAGAATCATCAGGAACTTATCTTAAACATTTGTTCAGAAAAAGACAGTTTAAGAGAAGAACTGAGAAAAAGGACAGAAACAGAGAAGCAGCATATGAACACAATAAAGCAG agatgtatccatttgcagataattcatataatgctggtcaccttccgcagGTTAATTAAAGAAAATAAGAATCATCAGAAACTCATCTTAAACATCTGCTCAGAAAAAGACAGTTTGATAGAAGAACTGAGAAAGAGGACTGAAACAGAGAAGCAACATATGAATACAATAAAGCAAgtgagtctacccagtttagattaagttattccatatattagccagaaaga Alignment from Exonerate_coding2genome GTTAATTAAAGAAAATAAGAATCATCAGGAACTTATCTTAAACATTTGTTCAGAAAAAGACAGTTTAAGAGAAGAACTGAGAAAAAGGACAGAAACAGAGAAGCAGCATATGAACACAATAAAGCAG agatgtatccatttgcagataattcatataatgctggtcaccttccgcagGTTAATTAAAGAAAATAAGAATCATCAGAAACTCATCTTAAACATCTGCTCAGAAAAAGACAGTTTGATAGAAGAACTGAGAAAGAGGACTGAAACAGAGAAGCAACATATGAATACAATAAAGCAAgtgagtctacccagtttagattaagttattccatatattagccagaaaga Alignment from GeneWise GTTAATTAAAGAAAATAAGAATCATCAGGAACTTATCTTAAACATTTGTTCAGAAAAAGACAGTTTAAGAGAAGAACTGAGAAAAAGGACAGAAACAGAGAAGCAGCATATGAACACAATAAAGCAG agatgtatccatttgcagataattcatataatgctggtcaccttccgcagGTTAATTAAAGAAAATAAGAATCATCAGAAACTCATCTTAAACATCTGCTCAGAAAAAGACAGTTTGATAGAAGAACTGAGAAAGAGGACTGAAACAGAGAAGCAACATATGAATACAATAAAGCAAgtgagtctacccagtttagattaagttattccatatattagccagaaaga #### AI846148_ID2141_5 --> 2 - 1 Original Alignment acCCCCCGTCTCCTGAGTCACCCACAGAGACATTCGCAGCACCAGCTGAAGTCCGACACTTCACTGATGGCAGCTTCCCTCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGACAGCAGAGCAGCAGAGGGCCTGCCCCAGCCACAAAACCCCTCTTCAg gtctcctactagattttgctcatgctttgtacctctcccctttcttgcagatCCCCCATCCCCA---GCACCAACAGAGACATTTGCTGCACCCGCAGAAGTCCAACAC---ACTGATGGTTGCTTCCCC------TTTGTTCTTCAGCTCTTCTCCCAC---CAGTTGCGAACCACTGACTGTAAGGACTCTACTGAGGAAAGCCGAGTTGCAGAGGGTTTACCCCTGCCACAAAACAGCTCACTAggttcgtcctcctagaggggacagttaaaggggacaggtaagcatttggag Alignment from CESAR acCCCCCGTCTCCTGAGTCACCCACAGAGACATTCGCAGCACCAGCTGAAGTCCGACACTTCACTGATGGCAGCTTCCCTCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGACAGCAGAGCAGCAGAGGGCCTGCCCCAGCCACAAAACCCCTCTTCAg gtctcctactagattttgctcatgctttgtacctctcccctttcttgcagatCCCCCATCCCCA---GCACCAACAGAGACATTTGCTGCACCCGCAGAAGTCCAACAC---ACTGATGGTTGCTTCCCC------TTTGTTCTTCAGCTCTTCTCCCAC---CAGTTGCGAACCACTGACTGTAAGGACTCTACTGAGGAAAGCCGAGTTGCAGAGGGTTTACCCCTGCCACAAAACAGCTCACTAggttcgtcctcctagaggggacagttaaaggggacaggtaagcatttggag Alignment from Spaln_aa2Genome ACCCCCCGTCTCCTGAGTCACCCACAGAGACATTCGCAGCACCAGCTGAAGTCCGACACTTCACTGATGGCAGCTTCCCTCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGACAGCAGAGCAGCAGAGGGCCTGCCCCAGCCACAAAACCCCTCTTCAG gtctcctactagattttgctcatgctttgtacctctcccctttcttgcagATCCCCCATCCCCA---GCACCAACAGAGACATTTGCTGCACCCGCAGAAGTCCAACAC---ACTGATGGTTGCTTCCCC------TTTGTTCTTCAGCTCTTCTCCCAC---CAGTTGCGAACCACTGACTGTAAGGACTCTACTGAGGAAAGCCGAGTTGCAGAGGGTTTACCCCTGCCACAAAACAGCTCACTAGgttcgtcctcctagaggggacagttaaaggggacaggtaagcatttggag Alignment from Spaln_nt2Genome ACCCCCCGTCTCCTGAGTCACCCACAGAGACATTCGCAGCACCAGCTGAAGTCCGACACTTCACTGATGGCAGCTTCCCTCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGACAGCAGAGCAGCAGAGGGCCTGCCCCAGCCACAAAACCCCTCTTCAG gtctcctactagattttgctcatgctttgtacctctcccctttcttgcagATCCCCCATCCCCAG---CACCAACAGAGACATTTGCTGCACCCGCAGAAGTCCAACA---CACTGATGGTTGCTTCCC------CTTTGTTCTTCAGCTCTTCTCCCAC---CAGTTGCGAACCACTGACTGTAAGGACTCTACTGAGGAAAGCCGAGTTGCAGAGGGTTTACCCCTGCCACAAAACAGCTCACTAGgttcgtcctcctagaggggacagttaaaggggacaggtaagcatttggag Alignment from Pairagon ACCCCCCGTCTCCTGAGTCACCCACAGAGACATTCGCAGCACCAGCTGAAGTCCGACACTTCACTGATGGCAGCTTCCCTCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGACAGCAGAGCAGCAGAGGGCCTGCCCCAGCCACAAAACCCCTCTTCAG gtctcctactagattttgctcatgctttgtacctctcccctttcttgcagATCCCCCATCCCCAG---CACCAACAGAGACATTTGCTGCACCCGCAGAAGTCCAACA---CACTGATGGTTGCTTCCC------CTTTGTTCTTCAGCTCTTCTCCCAC---CAGTTGCGAACCACTGACTGTAAGGACTCTACTGAGGAAAGCCGAGTTGCAGAGGGTTTACCCCTGCCACAAAACAGCTCACTAGgttcgtcctcctagaggggacagttaaaggggacaggtaagcatttggag Alignment from Exonerate_protein2genome ACCCCCCGTCTCCTGAGTCACCCACAGAGACATTCGCAGCACCAGCTGAAGTCCGACACTTCACTGATGGCAGCTTCCCTCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGACAGCAGAGCAGCAGAGGGCCTGCCCCAGCCACAAAACCCCTCTTCAG gtctcctactagattttgctcatgctttgtacctctcccctttcttgcagATCCCCCATCCCCA---GCACCAACAGAGACATTTGCTGCACCCGCAGAAGTCCAACAC---ACTGATGGTTGCTTCCCC------TTTGTTCTTCAGCTCTTCTCCCAC---CAGTTGCGAACCACTGACTGTAAGGACTCTACTGAGGAAAGCCGAGTTGCAGAGGGTTTACCCCTGCCACAAAACAGCTCACTAGgttcgtcctcctagaggggacagttaaaggggacaggtaagcatttggag Alignment from Exonerate_coding2genome ACCCCCCGTCTCCTGAGTCACCCACAGAGACATTCGCAGCACCAGCTGAAGTCCGACACTTCACTGATGGCAGCTTCCCTCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGACAGCAGAGCAGCAGAGGGCCTGCCCCAGCCACAAAACCCCTCTTCAG gtctcctactagattttgctcatgctttgtacctctcccctttcttgcagATCCCCCATCCCCA---GCACCAACAGAGACATTTGCTGCACCCGCAGAAGTCCAACAC---ACTGATGGTTGCTTCCCC------TTTGTTCTTCAGCTCTTCTCCCAC---CAGTTGCGAACCACTGACTGTAAGGACTCTACTGAGGAAAGCCGAGTTGCAGAGGGTTTACCCCTGCCACAAAACAGCTCACTAGgttcgtcctcctagaggggacagttaaaggggacaggtaagcatttggag Alignment from GeneWise ACCCCCCGTCTCCTGAGTCACCCACAGAGACATTCGCAGCACCAGCTGAAGTCCGACACTTCACTGATGGCAGCTTCCCTCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGACAGCAGAGCAGCAGAGGGCCTGCCCCAGCCACAAAACCCCTCTTCAG gtctcctactagattttgctcatgctttgtacctctcccctttcttgcagATCCCCCATCCCCA---GCACCAACAGAGACATTTGCTGCACCCGCAGAAGTCCAACAC---ACTGATGGTTGCTTCCCC------TTTGTTCTTCAGCTCTTCTCCCAC---CAGTTGCGAACCACTGACTGTAAGGACTCTACTGAGGAAAGCCGAGTTGCAGAGGGTTTACCCCTGCCACAAAACAGCTCACTAGgttcgtcctcctagaggggacagttaaaggggacaggtaagcatttggag #### AI846148_ID2144_2 --> 2 - 1 Original Alignment taACCCAACAGGAAAAGACGCCGCCACCTCGGCCTAACCTGCTGGAAGCAGGTGTTGAAGGCTGTGAGGAGCTCAAGCAGCAAGTGTCATGGGAGCAGGAGTTCCTGGTGGGGAACAGCCCAGGAGGCAGTGGACGGGCGCTGTGCATGGTGTGTGGGGCTGAGATCCGGTCCCCATCAGCAGACACTGCTCGCGCACACATCCTG---GAGCAGCATCCTCACACCCTGGACCTGAGCCCCTCTGAGAAGAGCAACATCTTAGAAGCCTGGAGTGAAGGGGTTGCCCTTCTGCAAGACATCCAAGCTGACCAGCCATCCCTGCCCAGCCTAg atactgtacatatcacattccaagatttaaaacaacttaatgttttatagtaACCCAACAAGAGAAAACACCCCCACCTCAACCTAATCTATTGGATGCAGGAGTTGATGGCTGTGAGGAGTTCAAGCAGCAAGTGTCATGGGAACAGGCATTACTTGTAGGGATTAGCCCTGGAGGAAGTGGACAGGCACTGTCCATGGTATGTGGTACTAAAATCCGCTCACCATCTGCAGACACTGCTCAAGCACATTTCCTCCCAGAGCAACATCCTCACACCCTAGATTTGAGTCCCTCAGAGAAAAGCAACATCCTGGAAGCCTGGAGTGAGGGGGTTGCTCTCCTACAAGATATCCAGGCTGACCAGCCCTCGCTGCCTGGTCTGggtgatgagggggagggctggtagcagactgtgggagtagcgagtgctaag Alignment from CESAR taACCCAACAGGAAAAGACGCCGCCACCTCGGCCTAACCTGCTGGAAGCAGGTGTTGAAGGCTGTGAGGAGCTCAAGCAGCAAGTGTCATGGGAGCAGGAGTTCCTGGTGGGGAACAGCCCAGGAGGCAGTGGACGGGCGCTGTGCATGGTGTGTGGGGCTGAGATCCGGTCCCCATCAGCAGACACTGCTCGCGCACACATCCTG---GAGCAGCATCCTCACACCCTGGACCTGAGCCCCTCTGAGAAGAGCAACATCTTAGAAGCCTGGAGTGAAGGGGTTGCCCTTCTGCAAGACATCCAAGCTGACCAGCCATCCCTGCCCAGCCTAg atactgtacatatcacattccaagatttaaaacaacttaatgttttatagtaACCCAACAAGAGAAAACACCCCCACCTCAACCTAATCTATTGGATGCAGGAGTTGATGGCTGTGAGGAGTTCAAGCAGCAAGTGTCATGGGAACAGGCATTACTTGTAGGGATTAGCCCTGGAGGAAGTGGACAGGCACTGTCCATGGTATGTGGTACTAAAATCCGCTCACCATCTGCAGACACTGCTCAAGCACATTTCCTCCCAGAGCAACATCCTCACACCCTAGATTTGAGTCCCTCAGAGAAAAGCAACATCCTGGAAGCCTGGAGTGAGGGGGTTGCTCTCCTACAAGATATCCAGGCTGACCAGCCCTCGCTGCCTGGTCTGggtgatgagggggagggctggtagcagactgtgggagtagcgagtgctaag Alignment from Spaln_aa2Genome TAACCCAACAGGAAAAGACGCCGCCACCTCGGCCTAACCTGCTGGAAGCAGGTGTTGAAGGCTGTGAGGAGCTCAAGCAGCAAGTGTCATGGGAGCAGGAGTTCCTGGTGGGGAACAGCCCAGGAGGCAGTGGACGGGCGCTGTGCATGGTGTGTGGGGCTGAGATCCGGTCCCCATCAGCAGACACTGCTCGCGCACACATCCTG---GAGCAGCATCCTCACACCCTGGACCTGAGCCCCTCTGAGAAGAGCAACATCTTAGAAGCCTGGAGTGAAGGGGTTGCCCTTCTGCAAGACATCCAAGCTGACCAGCCATCCCTGCCCAGCCTAG atactgtacatatcacattccaagatttaaaacaacttaatgttttatagTAACCCAACAAGAGAAAACACCCCCACCTCAACCTAATCTATTGGATGCAGGAGTTGATGGCTGTGAGGAGTTCAAGCAGCAAGTGTCATGGGAACAGGCATTACTTGTAGGGATTAGCCCTGGAGGAAGTGGACAGGCACTGTCCATGGTATGTGGTACTAAAATCCGCTCACCATCTGCAGACACTGCTCAAGCACATTTCCTCCCAGAGCAACATCCTCACACCCTAGATTTGAGTCCCTCAGAGAAAAGCAACATCCTGGAAGCCTGGAGTGAGGGGGTTGCTCTCCTACAAGATATCCAGGCTGACCAGCCCTCGCTGCCTGGTCTGGgtgatgagggggagggctggtagcagactgtgggagtagcgagtgctaag Alignment from Spaln_nt2Genome TAACCCAACAGGAAAAGACGCCGCCACCTCGGCCTAACCTGCTGGAAGCAGGTGTTGAAGGCTGTGAGGAGCTCAAGCAGCAAGTGTCATGGGAGCAGGAGTTCCTGGTGGGGAACAGCCCAGGAGGCAGTGGACGGGCGCTGTGCATGGTGTGTGGGGCTGAGATCCGGTCCCCATCAGCAGACACTGCTCGCGCACACATCCTG---GAGCAGCATCCTCACACCCTGGACCTGAGCCCCTCTGAGAAGAGCAACATCTTAGAAGCCTGGAGTGAAGGGGTTGCCCTTCTGCAAGACATCCAAGCTGACCAGCCATCCCTGCCCAGCCTAG atactgtacatatcacattccaagatttaaaacaacttaatgttttatagTAACCCAACAAGAGAAAACACCCCCACCTCAACCTAATCTATTGGATGCAGGAGTTGATGGCTGTGAGGAGTTCAAGCAGCAAGTGTCATGGGAACAGGCATTACTTGTAGGGATTAGCCCTGGAGGAAGTGGACAGGCACTGTCCATGGTATGTGGTACTAAAATCCGCTCACCATCTGCAGACACTGCTCAAGCACATTTCCTCCCAGAGCAACATCCTCACACCCTAGATTTGAGTCCCTCAGAGAAAAGCAACATCCTGGAAGCCTGGAGTGAGGGGGTTGCTCTCCTACAAGATATCCAGGCTGACCAGCCCTCGCTGCCTGGTCTGGgtgatgagggggagggctggtagcagactgtgggagtagcgagtgctaag Alignment from Pairagon TAACCCAACAGGAAAAGACGCCGCCACCTCGGCCTAACCTGCTGGAAGCAGGTGTTGAAGGCTGTGAGGAGCTCAAGCAGCAAGTGTCATGGGAGCAGGAGTTCCTGGTGGGGAACAGCCCAGGAGGCAGTGGACGGGCGCTGTGCATGGTGTGTGGGGCTGAGATCCGGTCCCCATCAGCAGACACTGCTCGCGCACA---CATCCTGGAGCAGCATCCTCACACCCTGGACCTGAGCCCCTCTGAGAAGAGCAACATCTTAGAAGCCTGGAGTGAAGGGGTTGCCCTTCTGCAAGACATCCAAGCTGACCAGCCATCCCTGCCCAGCCTAG atactgtacatatcacattccaagatttaaaacaacttaatgttttatagTAACCCAACAAGAGAAAACACCCCCACCTCAACCTAATCTATTGGATGCAGGAGTTGATGGCTGTGAGGAGTTCAAGCAGCAAGTGTCATGGGAACAGGCATTACTTGTAGGGATTAGCCCTGGAGGAAGTGGACAGGCACTGTCCATGGTATGTGGTACTAAAATCCGCTCACCATCTGCAGACACTGCTCAAGCACATTTCCTCCCAGAGCAACATCCTCACACCCTAGATTTGAGTCCCTCAGAGAAAAGCAACATCCTGGAAGCCTGGAGTGAGGGGGTTGCTCTCCTACAAGATATCCAGGCTGACCAGCCCTCGCTGCCTGGTCTGGgtgatgagggggagggctggtagcagactgtgggagtagcgagtgctaag Alignment from Exonerate_protein2genome TAACCCAACAGGAAAAGACGCCGCCACCTCGGCCTAACCTGCTGGAAGCAGGTGTTGAAGGCTGTGAGGAGCTCAAGCAGCAAGTGTCATGGGAGCAGGAGTTCCTGGTGGGGAACAGCCCAGGAGGCAGTGGACGGGCGCTGTGCATGGTGTGTGGGGCTGAGATCCGGTCCCCATCAGCAGACACTGCTCGCGCACACATCCTG---GAGCAGCATCCTCACACCCTGGACCTGAGCCCCTCTGAGAAGAGCAACATCTTAGAAGCCTGGAGTGAAGGGGTTGCCCTTCTGCAAGACATCCAAGCTGACCAGCCATCCCTGCCCAGCCTAG atactgtacatatcacattccaagatttaaaacaacttaatgttttatagTAACCCAACAAGAGAAAACACCCCCACCTCAACCTAATCTATTGGATGCAGGAGTTGATGGCTGTGAGGAGTTCAAGCAGCAAGTGTCATGGGAACAGGCATTACTTGTAGGGATTAGCCCTGGAGGAAGTGGACAGGCACTGTCCATGGTATGTGGTACTAAAATCCGCTCACCATCTGCAGACACTGCTCAAGCACATTTCCTCCCAGAGCAACATCCTCACACCCTAGATTTGAGTCCCTCAGAGAAAAGCAACATCCTGGAAGCCTGGAGTGAGGGGGTTGCTCTCCTACAAGATATCCAGGCTGACCAGCCCTCGCTGCCTGGTCTGGgtgatgagggggagggctggtagcagactgtgggagtagcgagtgctaag Alignment from Exonerate_coding2genome GTAACCCAACAGGAAAAGACGCCGCCACCTCGGCCTAACCTGCTGGAAGCAGGTGTTGAAGGCTGTGAGGAGCTCAAGCAGCAAGTGTCATGGGAGCAGGAGTTCCTGGTGGGGAACAGCCCAGGAGGCAGTGGACGGGCGCTGTGCATGGTGTGTGGGGCTGAGATCCGGTCCCCATCAGCAGACACTGCTCGCGCACACATCCTG---GAGCAGCATCCTCACACCCTGGACCTGAGCCCCTCTGAGAAGAGCAACATCTTAGAAGCCTGGAGTGAAGGGGTTGCCCTTCTGCAAGACATCCAAGCTGACCAGCCATCCCTGCCCAGCCTAG atactgtacatatcacattccaagatttaaaacaacttaatgttttataGTAACCCAACAAGAGAAAACACCCCCACCTCAACCTAATCTATTGGATGCAGGAGTTGATGGCTGTGAGGAGTTCAAGCAGCAAGTGTCATGGGAACAGGCATTACTTGTAGGGATTAGCCCTGGAGGAAGTGGACAGGCACTGTCCATGGTATGTGGTACTAAAATCCGCTCACCATCTGCAGACACTGCTCAAGCACATTTCCTCCCAGAGCAACATCCTCACACCCTAGATTTGAGTCCCTCAGAGAAAAGCAACATCCTGGAAGCCTGGAGTGAGGGGGTTGCTCTCCTACAAGATATCCAGGCTGACCAGCCCTCGCTGCCTGGTCTGGgtgatgagggggagggctggtagcagactgtgggagtagcgagtgctaag Alignment from GeneWise TAACCCAACAGGAAAAGACGCCGCCACCTCGGCCTAACCTGCTGGAAGCAGGTGTTGAAGGCTGTGAGGAGCTCAAGCAGCAAGTGTCATGGGAGCAGGAGTTCCTGGTGGGGAACAGCCCAGGAGGCAGTGGACGGGCGCTGTGCATGGTGTGTGGGGCTGAGATCCGGTCCCCATCAGCAGACACTGCTCGCGCACACATCCTG---GAGCAGCATCCTCACACCCTGGACCTGAGCCCCTCTGAGAAGAGCAACATCTTAGAAGCCTGGAGTGAAGGGGTTGCCCTTCTGCAAGACATCCAAGCTGACCAGCCATCCCTGCCCAGCCTAG atactgtacatatcacattccaagatttaaaacaacttaatgttttatagTAACCCAACAAGAGAAAACACCCCCACCTCAACCTAATCTATTGGATGCAGGAGTTGATGGCTGTGAGGAGTTCAAGCAGCAAGTGTCATGGGAACAGGCATTACTTGTAGGGATTAGCCCTGGAGGAAGTGGACAGGCACTGTCCATGGTATGTGGTACTAAAATCCGCTCACCATCTGCAGACACTGCTCAAGCACATTTCCTCCCAGAGCAACATCCTCACACCCTAGATTTGAGTCCCTCAGAGAAAAGCAACATCCTGGAAGCCTGGAGTGAGGGGGTTGCTCTCCTACAAGATATCCAGGCTGACCAGCCCTCGCTGCCTGGTCTGGgtgatgagggggagggctggtagcagactgtgggagtagcgagtgctaag #### Abcc2_ID8821_5 --> 0 - 0 Original Alignment GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC gatgatcttggttgtaactatgggcctcgactctgtcccttctcacccagGATAGTAAGTCAAACATGACATACTCCTGTCTGTTCTTCATCTCCTCCAGTTTCCAGATTGTGGTTTTGATCCTTTCAGCATTTTCAGAATCGAGTGACTCTACACATgtaagtctatacagtgtagtacatggatatttaaaaaagagtcactcttg Alignment from CESAR GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC gatgatcttggttgtaactatgggcctcgactctgtcccttctcacccagGATAGTAAGTCAAACATGACATACTCCTGTCTGTTCTTCATCTCCTCCAGTTTCCAGATTGTGGTTTTGATCCTTTCAGCATTTTCAGAATCGAGTGACTCTACACATgtaagtctatacagtgtagtacatggatatttaaaaaagagtcactcttg Alignment from Spaln_aa2Genome GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC gatgatcttggttgtaactatgggcctcgactctgtcccttctcacccagGATAGTAAGTCAAACATGACATACTCCTGTCTGTTCTTCATCTCCTCCAGTTTCCAGATTGTGGTTTTGATCCTTTCAGCATTTTCAGAATCGAGTGACTCTACACATgtaagtctatacagtgtagtacatggatatttaaaaaagagtcactcttg Alignment from Spaln_nt2Genome GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC gatgatcttggttgtaactatgggcctcgactctgtcccttctcacccagGATAGTAAGTCAAACATGACATACTCCTGTCTGTTCTTCATCTCCTCCAGTTTCCAGATTGTGGTTTTGATCCTTTCAGCATTTTCAGAATCGAGTGACTCTACACATgtaagtctatacagtgtagtacatggatatttaaaaaagagtcactcttg Alignment from Pairagon GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC gatgatcttggttgtaactatgggcctcgactctgtcccttctcacccagGATAGTAAGTCAAACATGACATACTCCTGTCTGTTCTTCATCTCCTCCAGTTTCCAGATTGTGGTTTTGATCCTTTCAGCATTTTCAGAATCGAGTGACTCTACACATgtaagtctatacagtgtagtacatggatatttaaaaaagagtcactcttg Alignment from Exonerate_protein2genome GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC gatgatcttggttgtaactatgggcctcgactctgtcccttctcacccagGATAGTAAGTCAAACATGACATACTCCTGTCTGTTCTTCATCTCCTCCAGTTTCCAGATTGTGGTTTTGATCCTTTCAGCATTTTCAGAATCGAGTGACTCTACACATgtaagtctatacagtgtagtacatggatatttaaaaaagagtcactcttg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC gatgatcttggttgtaactatgggcctcgactctgtcccttctcacccagGATAGTAAGTCAAACATGACATACTCCTGTCTGTTCTTCATCTCCTCCAGTTTCCAGATTGTGGTTTTGATCCTTTCAGCATTTTCAGAATCGAGTGACTCTACACATgtaagtctatacagtgtagtacatggatatttaaaaaagagtcactcttg #### Abcc2_ID8829_13 --> 0 - 0 Original Alignment GTGTCCGTGATCACATTTTCTGTTTACGTCCTGGTGGATAGTCAAAATGTTTTGAACGCGGAGAAGGCTTTCACCTCCATCACCCTCTTCAATATCCTGCGCTTTCCTCTGGCCATGCTTCCCATGGTGATCTCTTCAGTCATCCAG tggctgccagctctgaaagatggttgatttgtgtatatccctgtgttcagGTATCTGTGAATACATTTTCCGTCTACCTCCTAGTCGATAGTCAAAATGTCTCAAATGCAGAACAGGCCTTTACCTCTATCACCCTATTCAACATTTTGCACTTCTCACTAGCCATGCTCCCCATTGTGATTGCATCAGTCATCCAGgtaagtaagactactcttataccctcaatgtgctaacagcagaattcaaa Alignment from CESAR GTGTCCGTGATCACATTTTCTGTTTACGTCCTGGTGGATAGTCAAAATGTTTTGAACGCGGAGAAGGCTTTCACCTCCATCACCCTCTTCAATATCCTGCGCTTTCCTCTGGCCATGCTTCCCATGGTGATCTCTTCAGTCATCCAG tggctgccagctctgaaagatggttgatttgtgtatatccctgtgttcagGTATCTGTGAATACATTTTCCGTCTACCTCCTAGTCGATAGTCAAAATGTCTCAAATGCAGAACAGGCCTTTACCTCTATCACCCTATTCAACATTTTGCACTTCTCACTAGCCATGCTCCCCATTGTGATTGCATCAGTCATCCAGgtaagtaagactactcttataccctcaatgtgctaacagcagaattcaaa Alignment from Spaln_aa2Genome GTGTCCGTGATCACATTTTCTGTTTACGTCCTGGTGGATAGTCAAAATGTTTTGAACGCGGAGAAGGCTTTCACCTCCATCACCCTCTTCAATATCCTGCGCTTTCCTCTGGCCATGCTTCCCATGGTGATCTCTTCAGTCATCCAG tggctgccagctctgaaagatggttgatttgtgtatatccctgtgttcagGTATCTGTGAATACATTTTCCGTCTACCTCCTAGTCGATAGTCAAAATGTCTCAAATGCAGAACAGGCCTTTACCTCTATCACCCTATTCAACATTTTGCACTTCTCACTAGCCATGCTCCCCATTGTGATTGCATCAGTCATCCAGgtaagtaagactactcttataccctcaatgtgctaacagcagaattcaaa Alignment from Spaln_nt2Genome GTGTCCGTGATCACATTTTCTGTTTACGTCCTGGTGGATAGTCAAAATGTTTTGAACGCGGAGAAGGCTTTCACCTCCATCACCCTCTTCAATATCCTGCGCTTTCCTCTGGCCATGCTTCCCATGGTGATCTCTTCAGTCATCCAG tggctgccagctctgaaagatggttgatttgtgtatatccctgtgttcagGTATCTGTGAATACATTTTCCGTCTACCTCCTAGTCGATAGTCAAAATGTCTCAAATGCAGAACAGGCCTTTACCTCTATCACCCTATTCAACATTTTGCACTTCTCACTAGCCATGCTCCCCATTGTGATTGCATCAGTCATCCAGgtaagtaagactactcttataccctcaatgtgctaacagcagaattcaaa Alignment from Pairagon GTGTCCGTGATCACATTTTCTGTTTACGTCCTGGTGGATAGTCAAAATGTTTTGAACGCGGAGAAGGCTTTCACCTCCATCACCCTCTTCAATATCCTGCGCTTTCCTCTGGCCATGCTTCCCATGGTGATCTCTTCAGTCATCCAG tggctgccagctctgaaagatggttgatttgtgtatatccctgtgttcagGTATCTGTGAATACATTTTCCGTCTACCTCCTAGTCGATAGTCAAAATGTCTCAAATGCAGAACAGGCCTTTACCTCTATCACCCTATTCAACATTTTGCACTTCTCACTAGCCATGCTCCCCATTGTGATTGCATCAGTCATCCAGgtaagtaagactactcttataccctcaatgtgctaacagcagaattcaaa Alignment from Exonerate_protein2genome GTGTCCGTGATCACATTTTCTGTTTACGTCCTGGTGGATAGTCAAAATGTTTTGAACGCGGAGAAGGCTTTCACCTCCATCACCCTCTTCAATATCCTGCGCTTTCCTCTGGCCATGCTTCCCATGGTGATCTCTTCAGTCATCCAG tggctgccagctctgaaagatggttgatttgtgtatatccctgtgttcagGTATCTGTGAATACATTTTCCGTCTACCTCCTAGTCGATAGTCAAAATGTCTCAAATGCAGAACAGGCCTTTACCTCTATCACCCTATTCAACATTTTGCACTTCTCACTAGCCATGCTCCCCATTGTGATTGCATCAGTCATCCAGgtaagtaagactactcttataccctcaatgtgctaacagcagaattcaaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGTCCGTGATCACATTTTCTGTTTACGTCCTGGTGGATAGTCAAAATGTTTTGAACGCGGAGAAGGCTTTCACCTCCATCACCCTCTTCAATATCCTGCGCTTTCCTCTGGCCATGCTTCCCATGGTGATCTCTTCAGTCATCCAG tggctgccagctctgaaagatggttgatttgtgtatatccctgtgttcagGTATCTGTGAATACATTTTCCGTCTACCTCCTAGTCGATAGTCAAAATGTCTCAAATGCAGAACAGGCCTTTACCTCTATCACCCTATTCAACATTTTGCACTTCTCACTAGCCATGCTCCCCATTGTGATTGCATCAGTCATCCAGgtaagtaagactactcttataccctcaatgtgctaacagcagaattcaaa #### Abcc2_ID8834_18 --> 0 - 0 Original Alignment GGTATAAATCTCAGTGGCGGTCAGAAGCATCGAGTCAGCCTGGCCCGGGCCACCTATCAAGATGCAGACATCTATATTCTAGACGACCCCCTGTCGGCTGTGGACACTCACGTGGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGCGGCAAG atcaccacaaggatgtggtcctctaagctgttttttgttatattatttagGGTATAAATCTCAGTGGTGGTCAGAAACACCAAGTCAGTCTGGCTCGGGGTGCATATCAAGATGCTGACATATACATTCTCGAGGATCCACTTTCTGCTGTGGACACTCATGTAGGCAAACACATTTTCAACAAGGTTGTGGGCCCAAATGGCCTGTTGAGTGGCAAGgtgagtttgatcaacatttgcatatgtgtgtgtgtctgcctctgtgggtg Alignment from CESAR GGTATAAATCTCAGTGGCGGTCAGAAGCATCGAGTCAGCCTGGCCCGGGCCACCTATCAAGATGCAGACATCTATATTCTAGACGACCCCCTGTCGGCTGTGGACACTCACGTGGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGCGGCAAG atcaccacaaggatgtggtcctctaagctgttttttgttatattatttagGGTATAAATCTCAGTGGTGGTCAGAAACACCAAGTCAGTCTGGCTCGGGGTGCATATCAAGATGCTGACATATACATTCTCGAGGATCCACTTTCTGCTGTGGACACTCATGTAGGCAAACACATTTTCAACAAGGTTGTGGGCCCAAATGGCCTGTTGAGTGGCAAGgtgagtttgatcaacatttgcatatgtgtgtgtgtctgcctctgtgggtg Alignment from Spaln_aa2Genome GGTATAAATCTCAGTGGCGGTCAGAAGCATCGAGTCAGCCTGGCCCGGGCCACCTATCAAGATGCAGACATCTATATTCTAGACGACCCCCTGTCGGCTGTGGACACTCACGTGGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGCGGCAAG atcaccacaaggatgtggtcctctaagctgttttttgttatattatttagGGTATAAATCTCAGTGGTGGTCAGAAACACCAAGTCAGTCTGGCTCGGGGTGCATATCAAGATGCTGACATATACATTCTCGAGGATCCACTTTCTGCTGTGGACACTCATGTAGGCAAACACATTTTCAACAAGGTTGTGGGCCCAAATGGCCTGTTGAGTGGCAAGgtgagtttgatcaacatttgcatatgtgtgtgtgtctgcctctgtgggtg Alignment from Spaln_nt2Genome GGTATAAATCTCAGTGGCGGTCAGAAGCATCGAGTCAGCCTGGCCCGGGCCACCTATCAAGATGCAGACATCTATATTCTAGACGACCCCCTGTCGGCTGTGGACACTCACGTGGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGCGGCAAG atcaccacaaggatgtggtcctctaagctgttttttgttatattatttagGGTATAAATCTCAGTGGTGGTCAGAAACACCAAGTCAGTCTGGCTCGGGGTGCATATCAAGATGCTGACATATACATTCTCGAGGATCCACTTTCTGCTGTGGACACTCATGTAGGCAAACACATTTTCAACAAGGTTGTGGGCCCAAATGGCCTGTTGAGTGGCAAGgtgagtttgatcaacatttgcatatgtgtgtgtgtctgcctctgtgggtg Alignment from Pairagon GGTATAAATCTCAGTGGCGGTCAGAAGCATCGAGTCAGCCTGGCCCGGGCCACCTATCAAGATGCAGACATCTATATTCTAGACGACCCCCTGTCGGCTGTGGACACTCACGTGGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGCGGCAAG atcaccacaaggatgtggtcctctaagctgttttttgttatattatttagGGTATAAATCTCAGTGGTGGTCAGAAACACCAAGTCAGTCTGGCTCGGGGTGCATATCAAGATGCTGACATATACATTCTCGAGGATCCACTTTCTGCTGTGGACACTCATGTAGGCAAACACATTTTCAACAAGGTTGTGGGCCCAAATGGCCTGTTGAGTGGCAAGgtgagtttgatcaacatttgcatatgtgtgtgtgtctgcctctgtgggtg Alignment from Exonerate_protein2genome GGTATAAATCTCAGTGGCGGTCAGAAGCATCGAGTCAGCCTGGCCCGGGCCACCTATCAAGATGCAGACATCTATATTCTAGACGACCCCCTGTCGGCTGTGGACACTCACGTGGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGCGGCAAG atcaccacaaggatgtggtcctctaagctgttttttgttatattatttagGGTATAAATCTCAGTGGTGGTCAGAAACACCAAGTCAGTCTGGCTCGGGGTGCATATCAAGATGCTGACATATACATTCTCGAGGATCCACTTTCTGCTGTGGACACTCATGTAGGCAAACACATTTTCAACAAGGTTGTGGGCCCAAATGGCCTGTTGAGTGGCAAGgtgagtttgatcaacatttgcatatgtgtgtgtgtctgcctctgtgggtg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGTATAAATCTCAGTGGCGGTCAGAAGCATCGAGTCAGCCTGGCCCGGGCCACCTATCAAGATGCAGACATCTATATTCTAGACGACCCCCTGTCGGCTGTGGACACTCACGTGGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGCGGCAAG atcaccacaaggatgtggtcctctaagctgttttttgttatattatttagGGTATAAATCTCAGTGGTGGTCAGAAACACCAAGTCAGTCTGGCTCGGGGTGCATATCAAGATGCTGACATATACATTCTCGAGGATCCACTTTCTGCTGTGGACACTCATGTAGGCAAACACATTTTCAACAAGGTTGTGGGCCCAAATGGCCTGTTGAGTGGCAAGgtgagtttgatcaacatttgcatatgtgtgtgtgtctgcctctgtgggtg #### Abcc2_ID8838_22 --> 0 - 1 Original Alignment GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAg gaggtacattctctcattctggacctacatgtgattctcatttgtcgcagGTCAAGTTGTCTATTTACTTAAAGTATCTGCAGGCGGTGGGATGGTGGGCCCTGCTGTTCATTATCATCTTCTATGTACTGAACTATGTGGCCTTCATTGGCACTAATCTATGGTTGAGTGCTTGGACTAGTGACTCTGAAAAACAGAATAGCACTGACAATTCACCATCCCAGAGAGATATGAGAATCAGAGTATTTGGGGCTCTGGGTATCGCACAAggtgagcatgtcaagaccacaacccttaaagctagatacatcttgtcatat Alignment from CESAR GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAg gaggtacattctctcattctggacctacatgtgattctcatttgtcgcagGTCAAGTTGTCTATTTACTTAAAGTATCTGCAGGCGGTGGGATGGTGGGCCCTGCTGTTCATTATCATCTTCTATGTACTGAACTATGTGGCCTTCATTGGCACTAATCTATGGTTGAGTGCTTGGACTAGTGACTCTGAAAAACAGAATAGCACTGACAATTCACCATCCCAGAGAGATATGAGAATCAGAGTATTTGGGGCTCTGGGTATCGCACAAggtgagcatgtcaagaccacaacccttaaagctagatacatcttgtcatat Alignment from Spaln_aa2Genome GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAG gaggtacattctctcattctggacctacatgtgattctcatttgtcgcagGTCAAGTTGTCTATTTACTTAAAGTATCTGCAGGCGGTGGGATGGTGGGCCCTGCTGTTCATTATCATCTTCTATGTACTGAACTATGTGGCCTTCATTGGCACTAATCTATGGTTGAGTGCTTGGACTAGTGACTCTGAAAAACAGAATAGCACTGACAATTCACCATCCCAGAGAGATATGAGAATCAGAGTATTTGGGGCTCTGGGTATCGCACAAGgtgagcatgtcaagaccacaacccttaaagctagatacatcttgtcatat Alignment from Spaln_nt2Genome GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAG gaggtacattctctcattctggacctacatgtgattctcatttgtcgcagGTCAAGTTGTCTATTTACTTAAAGTATCTGCAGGCGGTGGGATGGTGGGCCCTGCTGTTCATTATCATCTTCTATGTACTGAACTATGTGGCCTTCATTGGCACTAATCTATGGTTGAGTGCTTGGACTAGTGACTCTGAAAAACAGAATAGCACTGACAATTCACCATCCCAGAGAGATATGAGAATCAGAGTATTTGGGGCTCTGGGTATCGCACAAGgtgagcatgtcaagaccacaacccttaaagctagatacatcttgtcatat Alignment from Pairagon GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAG gaggtacattctctcattctggacctacatgtgattctcatttgtcgcagGTCAAGTTGTCTATTTACTTAAAGTATCTGCAGGCGGTGGGATGGTGGGCCCTGCTGTTCATTATCATCTTCTATGTACTGAACTATGTGGCCTTCATTGGCACTAATCTATGGTTGAGTGCTTGGACTAGTGACTCTGAAAAACAGAATAGCACTGACAATTCACCATCCCAGAGAGATATGAGAATCAGAGTATTTGGGGCTCTGGGTATCGCACAAGgtgagcatgtcaagaccacaacccttaaagctagatacatcttgtcatat Alignment from Exonerate_protein2genome GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAG gaggtacattctctcattctggacctacatgtgattctcatttgtcgcagGTCAAGTTGTCTATTTACTTAAAGTATCTGCAGGCGGTGGGATGGTGGGCCCTGCTGTTCATTATCATCTTCTATGTACTGAACTATGTGGCCTTCATTGGCACTAATCTATGGTTGAGTGCTTGGACTAGTGACTCTGAAAAACAGAATAGCACTGACAATTCACCATCCCAGAGAGATATGAGAATCAGAGTATTTGGGGCTCTGGGTATCGCACAAGgtgagcatgtcaagaccacaacccttaaagctagatacatcttgtcatat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAG gaggtacattctctcattctggacctacatgtgattctcatttgtcgcagGTCAAGTTGTCTATTTACTTAAAGTATCTGCAGGCGGTGGGATGGTGGGCCCTGCTGTTCATTATCATCTTCTATGTACTGAACTATGTGGCCTTCATTGGCACTAATCTATGGTTGAGTGCTTGGACTAGTGACTCTGAAAAACAGAATAGCACTGACAATTCACCATCCCAGAGAGATATGAGAATCAGAGTATTTGGGGCTCTGGGTATCGCACAAGgtgagcatgtcaagaccacaacccttaaagctagatacatcttgtcatat #### Abcc2_ID8845_29 --> 0 - 0 Original Alignment GTCGGTGTGGTGGGCAGGACCGGAGCTGGAAAATCATCCCTCACAAACTGCCTCTTCAGAATCTTAGAGTCTGCAGGTGGCCAGATCATCATTGATGGGATTGATATTGCCTCCATTGGACTGCACGACCTTCGAGGGAGACTGACCATCATTCCCCAG ttgacattgtaaatgccatgttaagtcacacctttgttctgtcttggcagGTTGGTGTGGTGGACAGGAGTGGAGCTGGAAAATCGTCACTGACAAACTGTCTGTTA---ATCTCAGAGTCTGCAGGTGGACAGATGATCATTGATGGGATTGATGCTTCCTCCATTGGGCTGCATGACCTACAGGGTAGACTTACTATCATACCCCAAgtacactaaagggggcacacgcaggggaagcaatgacatagtccaaaaga Alignment from CESAR GTCGGTGTGGTGGGCAGGACCGGAGCTGGAAAATCATCCCTCACAAACTGCCTCTTCAGAATCTTAGAGTCTGCAGGTGGCCAGATCATCATTGATGGGATTGATATTGCCTCCATTGGACTGCACGACCTTCGAGGGAGACTGACCATCATTCCCCAG ttgacattgtaaatgccatgttaagtcacacctttgttctgtcttggcagGTTGGTGTGGTGGACAGGAGTGGAGCTGGAAAATCGTCACTGACAAACTGTCTGTTA---ATCTCAGAGTCTGCAGGTGGACAGATGATCATTGATGGGATTGATGCTTCCTCCATTGGGCTGCATGACCTACAGGGTAGACTTACTATCATACCCCAAgtacactaaagggggcacacgcaggggaagcaatgacatagtccaaaaga Alignment from Spaln_aa2Genome GTCGGTGTGGTGGGCAGGACCGGAGCTGGAAAATCATCCCTCACAAACTGCCTCTTCAGAATCTTAGAGTCTGCAGGTGGCCAGATCATCATTGATGGGATTGATATTGCCTCCATTGGACTGCACGACCTTCGAGGGAGACTGACCATCATTCCCCAG ttgacattgtaaatgccatgttaagtcacacctttgttctgtcttggcagGTTGGTGTGGTGGACAGGAGTGGAGCTGGAAAATCGTCACTGACAAACTGTCTGTTA---ATCTCAGAGTCTGCAGGTGGACAGATGATCATTGATGGGATTGATGCTTCCTCCATTGGGCTGCATGACCTACAGGGTAGACTTACTATCATACCCCAAgtacactaaagggggcacacgcaggggaagcaatgacatagtccaaaaga Alignment from Spaln_nt2Genome GTCGGTGTGGTGGGCAGGACCGGAGCTGGAAAATCATCCCTCACAAACTGCCTCTTCAGAATCTTAGAGTCTGCAGGTGGCCAGATCATCATTGATGGGATTGATATTGCCTCCATTGGACTGCACGACCTTCGAGGGAGACTGACCATCATTCCCCAG ttgacattgtaaatgccatgttaagtcacacctttgttctgtcttggcagGTTGGTGTGGTGGACAGGAGTGGAGCTGGAAAATCGTCACTGACAAACTGTCTGTT---AATCTCAGAGTCTGCAGGTGGACAGATGATCATTGATGGGATTGATGCTTCCTCCATTGGGCTGCATGACCTACAGGGTAGACTTACTATCATACCCCAAgtacactaaagggggcacacgcaggggaagcaatgacatagtccaaaaga Alignment from Pairagon GTCGGTGTGGTGGGCAGGACCGGAGCTGGAAAATCATCCCTCACAAACTGCCTCTTCAGAATCTTAGAGTCTGCAGGTGGCCAGATCATCATTGATGGGATTGATATTGCCTCCATTGGACTGCACGACCTTCGAGGGAGACTGACCATCATTCCCCAG ttgacattgtaaatgccatgttaagtcacacctttgttctgtcttggcagGTTGGTGTGGTGGACAGGAGTGGAGCTGGAAAATCGTCACTGACAAACTGTCTGTT---AATCTCAGAGTCTGCAGGTGGACAGATGATCATTGATGGGATTGATGCTTCCTCCATTGGGCTGCATGACCTACAGGGTAGACTTACTATCATACCCCAAgtacactaaagggggcacacgcaggggaagcaatgacatagtccaaaaga Alignment from Exonerate_protein2genome GTCGGTGTGGTGGGCAGGACCGGAGCTGGAAAATCATCCCTCACAAACTGCCTCTTCAGAATCTTAGAGTCTGCAGGTGGCCAGATCATCATTGATGGGATTGATATTGCCTCCATTGGACTGCACGACCTTCGAGGGAGACTGACCATCATTCCCCAG ttgacattgtaaatgccatgttaagtcacacctttgttctgtcttggcagGTTGGTGTGGTGGACAGGAGTGGAGCTGGAAAATCGTCACTGACAAACTGTCTGTTA---ATCTCAGAGTCTGCAGGTGGACAGATGATCATTGATGGGATTGATGCTTCCTCCATTGGGCTGCATGACCTACAGGGTAGACTTACTATCATACCCCAAgtacactaaagggggcacacgcaggggaagcaatgacatagtccaaaaga Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTCGGTGTGGTGGGCAGGACCGGAGCTGGAAAATCATCCCTCACAAACTGCCTCTTCAGAATCTTAGAGTCTGCAGGTGGCCAGATCATCATTGATGGGATTGATATTGCCTCCATTGGACTGCACGACCTTCGAGGGAGACTGACCATCATTCCCCAG ttgacattgtaaatgccatgttaagtcacacctttgttctgtcttggcagGTTGGTGTGGTGGACAGGAGTGGAGCTGGAAAATCGTCACTGACAAACTGTCTGTTA---ATCTCAGAGTCTGCAGGTGGACAGATGATCATTGATGGGATTGATGCTTCCTCCATTGGGCTGCATGACCTACAGGGTAGACTTACTATCATACCCCAAgtacactaaagggggcacacgcaggggaagcaatgacatagtccaaaaga #### Abcc2_ID8846_30 --> 0 - 2 Original Alignment GACCCCATTTTGTTCTCTGGGAATCTGAGGATGAATCTCGACCCTTTCAACAAATACTCGGATGAGGAGATCTGGAGGGCCCTGGAATTGGCTCATCTCAAATCCTTTGTGGCTGGCCTGCAACTTGGGTTGCTCCATGAAGTGACAGAGGGCGGTGACAACCTGag tgtccacatattaaactagtttgacggtcttttttttttttctaacacagGACGACATTTTGTTCTCAGGGAATTTGAGGATGAATCTTGACCCTTTCAACAAATATTCAGATGAGGAAATCTGGAGGGCACTGGAATTGGCACATCTCAAGTCCTCTGTAGCTGGTCTGCAGCTTGGGTTGCTCCATGAAGTGTCAGAAGGTGGTGACAACCTCaggtaagttctttctcctgcccctgtggagtgtgagggattagagaagtatc Alignment from CESAR GACCCCATTTTGTTCTCTGGGAATCTGAGGATGAATCTCGACCCTTTCAACAAATACTCGGATGAGGAGATCTGGAGGGCCCTGGAATTGGCTCATCTCAAATCCTTTGTGGCTGGCCTGCAACTTGGGTTGCTCCATGAAGTGACAGAGGGCGGTGACAACCTGag tgtccacatattaaactagtttgacggtcttttttttttttctaacacagGACGACATTTTGTTCTCAGGGAATTTGAGGATGAATCTTGACCCTTTCAACAAATATTCAGATGAGGAAATCTGGAGGGCACTGGAATTGGCACATCTCAAGTCCTCTGTAGCTGGTCTGCAGCTTGGGTTGCTCCATGAAGTGTCAGAAGGTGGTGACAACCTCaggtaagttctttctcctgcccctgtggagtgtgagggattagagaagtatc Alignment from Spaln_aa2Genome GACCCCATTTTGTTCTCTGGGAATCTGAGGATGAATCTCGACCCTTTCAACAAATACTCGGATGAGGAGATCTGGAGGGCCCTGGAATTGGCTCATCTCAAATCCTTTGTGGCTGGCCTGCAACTTGGGTTGCTCCATGAAGTGACAGAGGGCGGTGACAACCTGAG tgtccacatattaaactagtttgacggtcttttttttttttctaacacagGACGACATTTTGTTCTCAGGGAATTTGAGGATGAATCTTGACCCTTTCAACAAATATTCAGATGAGGAAATCTGGAGGGCACTGGAATTGGCACATCTCAAGTCCTCTGTAGCTGGTCTGCAGCTTGGGTTGCTCCATGAAGTGTCAGAAGGTGGTGACAACCTCAGgtaagttctttctcctgcccctgtggagtgtgagggattagagaagtatc Alignment from Spaln_nt2Genome GACCCCATTTTGTTCTCTGGGAATCTGAGGATGAATCTCGACCCTTTCAACAAATACTCGGATGAGGAGATCTGGAGGGCCCTGGAATTGGCTCATCTCAAATCCTTTGTGGCTGGCCTGCAACTTGGGTTGCTCCATGAAGTGACAGAGGGCGGTGACAACCTGAG tgtccacatattaaactagtttgacggtcttttttttttttctaacacagGACGACATTTTGTTCTCAGGGAATTTGAGGATGAATCTTGACCCTTTCAACAAATATTCAGATGAGGAAATCTGGAGGGCACTGGAATTGGCACATCTCAAGTCCTCTGTAGCTGGTCTGCAGCTTGGGTTGCTCCATGAAGTGTCAGAAGGTGGTGACAACCTCAGgtaagttctttctcctgcccctgtggagtgtgagggattagagaagtatc Alignment from Pairagon GACCCCATTTTGTTCTCTGGGAATCTGAGGATGAATCTCGACCCTTTCAACAAATACTCGGATGAGGAGATCTGGAGGGCCCTGGAATTGGCTCATCTCAAATCCTTTGTGGCTGGCCTGCAACTTGGGTTGCTCCATGAAGTGACAGAGGGCGGTGACAACCTGAG tgtccacatattaaactagtttgacggtcttttttttttttctaacacagGACGACATTTTGTTCTCAGGGAATTTGAGGATGAATCTTGACCCTTTCAACAAATATTCAGATGAGGAAATCTGGAGGGCACTGGAATTGGCACATCTCAAGTCCTCTGTAGCTGGTCTGCAGCTTGGGTTGCTCCATGAAGTGTCAGAAGGTGGTGACAACCTCAGgtaagttctttctcctgcccctgtggagtgtgagggattagagaagtatc Alignment from Exonerate_protein2genome GACCCCATTTTGTTCTCTGGGAATCTGAGGATGAATCTCGACCCTTTCAACAAATACTCGGATGAGGAGATCTGGAGGGCCCTGGAATTGGCTCATCTCAAATCCTTTGTGGCTGGCCTGCAACTTGGGTTGCTCCATGAAGTGACAGAGGGCGGTGACAACCTGAG tgtccacatattaaactagtttgacggtcttttttttttttctaacacagGACGACATTTTGTTCTCAGGGAATTTGAGGATGAATCTTGACCCTTTCAACAAATATTCAGATGAGGAAATCTGGAGGGCACTGGAATTGGCACATCTCAAGTCCTCTGTAGCTGGTCTGCAGCTTGGGTTGCTCCATGAAGTGTCAGAAGGTGGTGACAACCTCAGgtaagttctttctcctgcccctgtggagtgtgagggattagagaagtatc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GACCCCATTTTGTTCTCTGGGAATCTGAGGATGAATCTCGACCCTTTCAACAAATACTCGGATGAGGAGATCTGGAGGGCCCTGGAATTGGCTCATCTCAAATCCTTTGTGGCTGGCCTGCAACTTGGGTTGCTCCATGAAGTGACAGAGGGCGGTGACAACCTGAG tgtccacatattaaactagtttgacggtcttttttttttttctaacacagGACGACATTTTGTTCTCAGGGAATTTGAGGATGAATCTTGACCCTTTCAACAAATATTCAGATGAGGAAATCTGGAGGGCACTGGAATTGGCACATCTCAAGTCCTCTGTAGCTGGTCTGCAGCTTGGGTTGCTCCATGAAGTGTCAGAAGGTGGTGACAACCTCAGgtaagttctttctcctgcccctgtggagtgtgagggattagagaagtatc #### Acsl5_ID11597_2 --> 0 - 1 Original Alignment GGAGGAGCA------CGGAGGGGCGCTTTCCAGAAGAACAATGACCTAATCCTTTATTACTTCTCAGACGCCAAGACGTTGTATGAAAATTTCCAAAGAGGACTTGCTGTGTCTg ttcaagggtcaagctgcagtagaaagttaagcttgtgcccattttcctagGGGGGGGCATCTGCTGGGAGAGGTGCTGTTAAGGAGAACAATGACCTAATCCTCTGTTATTTCTCAGATTCCAAAACACCATATGAAAATGTCCAGAGAGGACTTGCTGTGTCTggtaagattgttcacttgatctcttatagtgggctatctaccatgagtttg Alignment from CESAR GGAGGAGCA------CGGAGGGGCGCTTTCCAGAAGAACAATGACCTAATCCTTTATTACTTCTCAGACGCCAAGACGTTGTATGAAAATTTCCAAAGAGGACTTGCTGTGTCTg ttcaagggtcaagctgcagtagaaagttaagcttgtgcccattttcctagGGGGGGGCATCTGCTGGGAGAGGTGCTGTTAAGGAGAACAATGACCTAATCCTCTGTTATTTCTCAGATTCCAAAACACCATATGAAAATGTCCAGAGAGGACTTGCTGTGTCTggtaagattgttcacttgatctcttatagtgggctatctaccatgagtttg Alignment from Spaln_aa2Genome GGAGGA------GCACGGAGGGGCGCTTTCCAGAAGAACAATGACCTAATCCTTTATTACTTCTCAGACGCCAAGACGTTGTATGAAAATTTCCAAAGAGGACTTGCTGTGTCTG ttcaagggtcaagctgcagtagaaagttaagcttgtgcccattttcctagGGGGGGGCATCTGCTGGGAGAGGTGCTGTTAAGGAGAACAATGACCTAATCCTCTGTTATTTCTCAGATTCCAAAACACCATATGAAAATGTCCAGAGAGGACTTGCTGTGTCTGgtaagattgttcacttgatctcttatagtgggctatctaccatgagtttg Alignment from Spaln_nt2Genome GGAGGAGCAC------GGAGGGGCGCTTTCCAGAAGAACAATGACCTAATCCTTTATTACTTCTCAGACGCCAAGACGTTGTATGAAAATTTCCAAAGAGGACTTGCTGTGTCTG ttcaagggtcaagctgcagtagaaagttaagcttgtgcccattttcctagGGGGGGGCATCTGCTGGGAGAGGTGCTGTTAAGGAGAACAATGACCTAATCCTCTGTTATTTCTCAGATTCCAAAACACCATATGAAAATGTCCAGAGAGGACTTGCTGTGTCTGgtaagattgttcacttgatctcttatagtgggctatctaccatgagtttg Alignment from Pairagon GGAGGAGCAC------GGAGGGGCGCTTTCCAGAAGAACAATGACCTAATCCTTTATTACTTCTCAGACGCCAAGACGTTGTATGAAAATTTCCAAAGAGGACTTGCTGTGTCTG ttcaagggtcaagctgcagtagaaagttaagcttgtgcccattttcctagGGGGGGGCATCTGCTGGGAGAGGTGCTGTTAAGGAGAACAATGACCTAATCCTCTGTTATTTCTCAGATTCCAAAACACCATATGAAAATGTCCAGAGAGGACTTGCTGTGTCTGgtaagattgttcacttgatctcttatagtgggctatctaccatgagtttg Alignment from Exonerate_protein2genome GGAGGAGCACGG------AGGGGCGCTTTCCAGAAGAACAATGACCTAATCCTTTATTACTTCTCAGACGCCAAGACGTTGTATGAAAATTTCCAAAGAGGACTTGCTGTGTCTG ttcaagggtcaagctgcagtagaaagttaagcttgtgcccattttcctagGGGGGGGCATCTGCTGGGAGAGGTGCTGTTAAGGAGAACAATGACCTAATCCTCTGTTATTTCTCAGATTCCAAAACACCATATGAAAATGTCCAGAGAGGACTTGCTGTGTCTGgtaagattgttcacttgatctcttatagtgggctatctaccatgagtttg Alignment from Exonerate_coding2genome ttcaagggtcaagctgcagtagaaagttaagcttgtgcccattttcctaggggggggcatctgctgggagaggtgctgttaaggagaacaatgacctaatcctctgttatttctcagattccaaaacaccatatgaaaatgtccagagaggacttgctgtgtctggtaagattgttcacttgatctcttatagtgggctatctaccatgagtttg Alignment from GeneWise GGAGGAGCACGG------AGGGGCGCTTTCCAGAAGAACAATGACCTAATCCTTTATTACTTCTCAGACGCCAAGACGTTGTATGAAAATTTCCAAAGAGGACTTGCTGTGTCTG ttcaagggtcaagctgcagtagaaagttaagcttgtgcccattttcctagGGGGGGGCATCTGCTGGGAGAGGTGCTGTTAAGGAGAACAATGACCTAATCCTCTGTTATTTCTCAGATTCCAAAACACCATATGAAAATGTCCAGAGAGGACTTGCTGTGTCTGgtaagattgttcacttgatctcttatagtgggctatctaccatgagtttg #### Acsl5_ID11601_6 --> 2 - 0 Original Alignment ctGATATCCCTGTGGTCATCTGTGATACACCCCAAAAGGCAACAATGCTAGTAGAAAATGTGGAAAAGGGCCTCACACCAGGCCTGAAGACGATCATCCTCATGGACCCTTTTGATGACGACCTGATGAAAAGAGGAGAAAAGTGTGGAGTTGAGATGTTATCCCTGCATGATGCGGAG gctgttcactgcttggaacactatggtgggtatcatgtgaatccgttcagctGACATACCAGTGGTCAACTGTGATACACCTGAGAAGGCAACAATGGTAGTAGAAAATGTGGCAAAAGGCCTGACACCAGGCCTAAAAACGATCATCCTGATGGACCGGTTTGATGATGATTTGATGAAACGAGGAGAAAAGTGTGGAGTTGAGATGTTATCTCTACATGATGCAGAGgtgaggatcaaaagcagcttgaagctggtgagtgcgtattggtatctaaa Alignment from CESAR ctGATATCCCTGTGGTCATCTGTGATACACCCCAAAAGGCAACAATGCTAGTAGAAAATGTGGAAAAGGGCCTCACACCAGGCCTGAAGACGATCATCCTCATGGACCCTTTTGATGACGACCTGATGAAAAGAGGAGAAAAGTGTGGAGTTGAGATGTTATCCCTGCATGATGCGGAG gctgttcactgcttggaacactatggtgggtatcatgtgaatccgttcagctGACATACCAGTGGTCAACTGTGATACACCTGAGAAGGCAACAATGGTAGTAGAAAATGTGGCAAAAGGCCTGACACCAGGCCTAAAAACGATCATCCTGATGGACCGGTTTGATGATGATTTGATGAAACGAGGAGAAAAGTGTGGAGTTGAGATGTTATCTCTACATGATGCAGAGgtgaggatcaaaagcagcttgaagctggtgagtgcgtattggtatctaaa Alignment from Spaln_aa2Genome CTGATATCCCTGTGGTCATCTGTGATACACCCCAAAAGGCAACAATGCTAGTAGAAAATGTGGAAAAGGGCCTCACACCAGGCCTGAAGACGATCATCCTCATGGACCCTTTTGATGACGACCTGATGAAAAGAGGAGAAAAGTGTGGAGTTGAGATGTTATCCCTGCATGATGCGGAG gctgttcactgcttggaacactatggtgggtatcatgtgaatccgttcagCTGACATACCAGTGGTCAACTGTGATACACCTGAGAAGGCAACAATGGTAGTAGAAAATGTGGCAAAAGGCCTGACACCAGGCCTAAAAACGATCATCCTGATGGACCGGTTTGATGATGATTTGATGAAACGAGGAGAAAAGTGTGGAGTTGAGATGTTATCTCTACATGATGCAGAGgtgaggatcaaaagcagcttgaagctggtgagtgcgtattggtatctaaa Alignment from Spaln_nt2Genome CTGATATCCCTGTGGTCATCTGTGATACACCCCAAAAGGCAACAATGCTAGTAGAAAATGTGGAAAAGGGCCTCACACCAGGCCTGAAGACGATCATCCTCATGGACCCTTTTGATGACGACCTGATGAAAAGAGGAGAAAAGTGTGGAGTTGAGATGTTATCCCTGCATGATGCGGAG gctgttcactgcttggaacactatggtgggtatcatgtgaatccgttcagCTGACATACCAGTGGTCAACTGTGATACACCTGAGAAGGCAACAATGGTAGTAGAAAATGTGGCAAAAGGCCTGACACCAGGCCTAAAAACGATCATCCTGATGGACCGGTTTGATGATGATTTGATGAAACGAGGAGAAAAGTGTGGAGTTGAGATGTTATCTCTACATGATGCAGAGgtgaggatcaaaagcagcttgaagctggtgagtgcgtattggtatctaaa Alignment from Pairagon CTGATATCCCTGTGGTCATCTGTGATACACCCCAAAAGGCAACAATGCTAGTAGAAAATGTGGAAAAGGGCCTCACACCAGGCCTGAAGACGATCATCCTCATGGACCCTTTTGATGACGACCTGATGAAAAGAGGAGAAAAGTGTGGAGTTGAGATGTTATCCCTGCATGATGCGGAG gctgttcactgcttggaacactatggtgggtatcatgtgaatccgttcagCTGACATACCAGTGGTCAACTGTGATACACCTGAGAAGGCAACAATGGTAGTAGAAAATGTGGCAAAAGGCCTGACACCAGGCCTAAAAACGATCATCCTGATGGACCGGTTTGATGATGATTTGATGAAACGAGGAGAAAAGTGTGGAGTTGAGATGTTATCTCTACATGATGCAGAGgtgaggatcaaaagcagcttgaagctggtgagtgcgtattggtatctaaa Alignment from Exonerate_protein2genome CTGATATCCCTGTGGTCATCTGTGATACACCCCAAAAGGCAACAATGCTAGTAGAAAATGTGGAAAAGGGCCTCACACCAGGCCTGAAGACGATCATCCTCATGGACCCTTTTGATGACGACCTGATGAAAAGAGGAGAAAAGTGTGGAGTTGAGATGTTATCCCTGCATGATGCGGAG gctgttcactgcttggaacactatggtgggtatcatgtgaatccgttcagCTGACATACCAGTGGTCAACTGTGATACACCTGAGAAGGCAACAATGGTAGTAGAAAATGTGGCAAAAGGCCTGACACCAGGCCTAAAAACGATCATCCTGATGGACCGGTTTGATGATGATTTGATGAAACGAGGAGAAAAGTGTGGAGTTGAGATGTTATCTCTACATGATGCAGAGgtgaggatcaaaagcagcttgaagctggtgagtgcgtattggtatctaaa Alignment from Exonerate_coding2genome CTGATATCCCTGTGGTCATCTGTGATACACCCCAAAAGGCAACAATGCTAGTAGAAAATGTGGAAAAGGGCCTCACACCAGGCCTGAAGACGATCATCCTCATGGACCCTTTTGATGACGACCTGATGAAAAGAGGAGAAAAGTGTGGAGTTGAGATGTTATCCCTGCATGATGCGGAG gctgttcactgcttggaacactatggtgggtatcatgtgaatccgttcagCTGACATACCAGTGGTCAACTGTGATACACCTGAGAAGGCAACAATGGTAGTAGAAAATGTGGCAAAAGGCCTGACACCAGGCCTAAAAACGATCATCCTGATGGACCGGTTTGATGATGATTTGATGAAACGAGGAGAAAAGTGTGGAGTTGAGATGTTATCTCTACATGATGCAGAGgtgaggatcaaaagcagcttgaagctggtgagtgcgtattggtatctaaa Alignment from GeneWise CTGATATCCCTGTGGTCATCTGTGATACACCCCAAAAGGCAACAATGCTAGTAGAAAATGTGGAAAAGGGCCTCACACCAGGCCTGAAGACGATCATCCTCATGGACCCTTTTGATGACGACCTGATGAAAAGAGGAGAAAAGTGTGGAGTTGAGATGTTATCCCTGCATGATGCGGAG gctgttcactgcttggaacactatggtgggtatcatgtgaatccgttcagCTGACATACCAGTGGTCAACTGTGATACACCTGAGAAGGCAACAATGGTAGTAGAAAATGTGGCAAAAGGCCTGACACCAGGCCTAAAAACGATCATCCTGATGGACCGGTTTGATGATGATTTGATGAAACGAGGAGAAAAGTGTGGAGTTGAGATGTTATCTCTACATGATGCAGAGgtgaggatcaaaagcagcttgaagctggtgagtgcgtattggtatctaaa #### Acsl5_ID11604_9 --> 2 - 0 Original Alignment gtGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG taaccaccaggctactggtgttctttctgatctctcctgcttcctcctaggtGATCCTGAAGGAGCCATGTTGACACATGAAAATGTTGTTTCCAACATGGCTGCTTTTCTCAAACTTCTAGAGgtaaagagtattcaccacaatctaaattgactataggagtttcatgatca Alignment from CESAR gtGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG taaccaccaggctactggtgttctttctgatctctcctgcttcctcctaggtGATCCTGAAGGAGCCATGTTGACACATGAAAATGTTGTTTCCAACATGGCTGCTTTTCTCAAACTTCTAGAGgtaaagagtattcaccacaatctaaattgactataggagtttcatgatca Alignment from Spaln_aa2Genome GTGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG taaccaccaggctactggtgttctttctgatctctcctgcttcctcctagGTGATCCTGAAGGAGCCATGTTGACACATGAAAATGTTGTTTCCAACATGGCTGCTTTTCTCAAACTTCTAGAGgtaaagagtattcaccacaatctaaattgactataggagtttcatgatca Alignment from Spaln_nt2Genome taaccaccaggctactggtgttctttctgatctctcctgcttcctcctaggtgatcctgaaggagccatgttgacacatgaaaatgttgtttccaacatggctgcttttctcaaacttctagaggtaaagagtattcaccacaatctaaattgactataggagtttcatgatca Alignment from Pairagon GTGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG taaccaccaggctactggtgttctttctgatctctcctgcttcctcctagGTGATCCTGAAGGAGCCATGTTGACACATGAAAATGTTGTTTCCAACATGGCTGCTTTTCTCAAACTTCTAGAGgtaaagagtattcaccacaatctaaattgactataggagtttcatgatca Alignment from Exonerate_protein2genome GTGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG taaccaccaggctactggtgttctttctgatctctcctgcttcctcctagGTGATCCTGAAGGAGCCATGTTGACACATGAAAATGTTGTTTCCAACATGGCTGCTTTTCTCAAACTTCTAGAGgtaaagagtattcaccacaatctaaattgactataggagtttcatgatca Alignment from Exonerate_coding2genome GTGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG taaccaccaggctactggtgttctttctgatctctcctgcttcctcctagGTGATCCTGAAGGAGCCATGTTGACACATGAAAATGTTGTTTCCAACATGGCTGCTTTTCTCAAACTTCTAGAGgtaaagagtattcaccacaatctaaattgactataggagtttcatgatca Alignment from GeneWise GTGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG taaccaccaggctactggtgttctttctgatctctcctgcttcctcctagGTGATCCTGAAGGAGCCATGTTGACACATGAAAATGTTGTTTCCAACATGGCTGCTTTTCTCAAACTTCTAGAGgtaaagagtattcaccacaatctaaattgactataggagtttcatgatca #### Acsl5_ID11610_15 --> 2 - 0 Original Alignment gtCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG gatacaaatgtgcttactctgcagttacttcccatctctgttcctctcaggtCATGTTGGCACTCCAGTAGCATCCAATTTTGTAAAGCTTGAAGATGTAGCAGATATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtaagtgagactgatacagcacctacttagggcagatgggagaactgtcc Alignment from CESAR gtCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG gatacaaatgtgcttactctgcagttacttcccatctctgttcctctcaggtCATGTTGGCACTCCAGTAGCATCCAATTTTGTAAAGCTTGAAGATGTAGCAGATATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtaagtgagactgatacagcacctacttagggcagatgggagaactgtcc Alignment from Spaln_aa2Genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG gatacaaatgtgcttactctgcagttacttcccatctctgttcctctcagGTCATGTTGGCACTCCAGTAGCATCCAATTTTGTAAAGCTTGAAGATGTAGCAGATATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtaagtgagactgatacagcacctacttagggcagatgggagaactgtcc Alignment from Spaln_nt2Genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG gatacaaatgtgcttactctgcagttacttcccatctctgttcctctcagGTCATGTTGGCACTCCAGTAGCATCCAATTTTGTAAAGCTTGAAGATGTAGCAGATATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtaagtgagactgatacagcacctacttagggcagatgggagaactgtcc Alignment from Pairagon GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG gatacaaatgtgcttactctgcagttacttcccatctctgttcctctcagGTCATGTTGGCACTCCAGTAGCATCCAATTTTGTAAAGCTTGAAGATGTAGCAGATATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtaagtgagactgatacagcacctacttagggcagatgggagaactgtcc Alignment from Exonerate_protein2genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG gatacaaatgtgcttactctgcagttacttcccatctctgttcctctcagGTCATGTTGGCACTCCAGTAGCATCCAATTTTGTAAAGCTTGAAGATGTAGCAGATATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtaagtgagactgatacagcacctacttagggcagatgggagaactgtcc Alignment from Exonerate_coding2genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG gatacaaatgtgcttactctgcagttacttcccatctctgttcctctcagGTCATGTTGGCACTCCAGTAGCATCCAATTTTGTAAAGCTTGAAGATGTAGCAGATATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtaagtgagactgatacagcacctacttagggcagatgggagaactgtcc Alignment from GeneWise GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG gatacaaatgtgcttactctgcagttacttcccatctctgttcctctcagGTCATGTTGGCACTCCAGTAGCATCCAATTTTGTAAAGCTTGAAGATGTAGCAGATATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtaagtgagactgatacagcacctacttagggcagatgggagaactgtcc #### Actn3_ID690_20 --> 0 - 0 Original Alignment GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG aagaatccctctttaatttaatatctatctgtatgttatgtcttcattagGGAGAAGTGGAGTCTGCTCGAATCATGACAATGGTTGGCCCCAATGCAGCTGGAGTTGTAAACTTTCAGGCTTTCATAGACTCCATGACAAGAAAGACTGCTGAGACAGACATAGCAGAACAGGTTGTGGCCTCATTA---ATCCTGACAGGTGATAAAgtaagtttctttggtgtgtagggctataatcctaccacatgacccataac Alignment from CESAR GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG aagaatccctctttaatttaatatctatctgtatgttatgtcttcattagGGAGAAGTGGAGTCTGCTCGAATCATGACAATGGTTGGCCCCAATGCAGCTGGAGTTGTAAACTTTCAGGCTTTCATAGACTCCATGACAAGAAAGACTGCTGAGACAGACATAGCAGAACAGGTTGTGGCCTCATTA---ATCCTGACAGGTGATAAAgtaagtttctttggtgtgtagggctataatcctaccacatgacccataac Alignment from Spaln_aa2Genome GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG aagaatccctctttaatttaatatctatctgtatgttatgtcttcattagGGAGAAGTGGAGTCTGCTCGAATCATGACAATGGTTGGCCCCAATGCAGCTGGAGTTGTAAACTTTCAGGCTTTCATAGACTCCATGACAAGAAAGACTGCTGAGACAGACATAGCAGAACAGGTTGTGGCCTCATTA---ATCCTGACAGGTGATAAAgtaagtttctttggtgtgtagggctataatcctaccacatgacccataac Alignment from Spaln_nt2Genome GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG aagaatccctctttaatttaatatctatctgtatgttatgtcttcattagGGAGAAGTGGAGTCTGCTCGAATCATGACAATGGTTGGCCCCAATGCAGCTGGAGTTGTAAACTTTCAGGCTTTCATAGACTCCATGACAAGAAAGACTGCTGAGACAGACATAGCAGAACAGGTTGTGGCCTCATT---AATCCTGACAGGTGATAAAgtaagtttctttggtgtgtagggctataatcctaccacatgacccataac Alignment from Pairagon GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG aagaatccctctttaatttaatatctatctgtatgttatgtcttcattagGGAGAAGTGGAGTCTGCTCGAATCATGACAATGGTTGGCCCCAATGCAGCTGGAGTTGTAAACTTTCAGGCTTTCATAGACTCCATGACAAGAAAGACTGCTGAGACAGACATAGCAGAACAGGTTGTGGCCTCATT---AATCCTGACAGGTGATAAAgtaagtttctttggtgtgtagggctataatcctaccacatgacccataac Alignment from Exonerate_protein2genome GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG aagaatccctctttaatttaatatctatctgtatgttatgtcttcattagGGAGAAGTGGAGTCTGCTCGAATCATGACAATGGTTGGCCCCAATGCAGCTGGAGTTGTAAACTTTCAGGCTTTCATAGACTCCATGACAAGAAAGACTGCTGAGACAGACATAGCAGAACAGGTTGTGGCCTCATTA---ATCCTGACAGGTGATAAAgtaagtttctttggtgtgtagggctataatcctaccacatgacccataac Alignment from Exonerate_coding2genome GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG aagaatccctctttaatttaatatctatctgtatgttatgtcttcattagGGAGAAGTGGAGTCTGCTCGAATCATGACAATGGTTGGCCCCAATGCAGCTGGAGTTGTAAACTTTCAGGCTTTCATAGACTCCATGACAAGAAAGACTGCTGAGACAGACATAGCAGAACAGGTTGTGGCCTCATTA---ATCCTGACAGGTGATAAAgtaagtttctttggtgtgtagggctataatcctaccacatgacccataac Alignment from GeneWise GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG aagaatccctctttaatttaatatctatctgtatgttatgtcttcattagGGAGAAGTGGAGTCTGCTCGAATCATGACAATGGTTGGCCCCAATGCAGCTGGAGTTGTAAACTTTCAGGCTTTCATAGACTCCATGACAAGAAAGACTGCTGAGACAGACATAGCAGAACAGGTTGTGGCCTCATTA---ATCCTGACAGGTGATAAAgtaagtttctttggtgtgtagggctataatcctaccacatgacccataac #### Actn3_ID695_15 --> 0 - 0 Original Alignment AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctatgggcaaatgtggataatggcccttctctttcccccttttagAGCCTACTAACAGCACACGAACAATTCAAAGCAACATTACCTGAAGCTGATCGAGAGCGAGGTGCTGTCCCAGGCATCCAAGGAGAGATTTCAAAGATCTGCCAAACATATGGGTTACGTCCCAAATCCGGGAACCCCTACATTACCCTCAGTTCAAGGGACATCAATAATAAGTGGGATACTgtaggtaacctgggttatactaaatgggagttctgttgtagcaagattgg Alignment from CESAR AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctatgggcaaatgtggataatggcccttctctttcccccttttagAGCCTACTAACAGCACACGAACAATTCAAAGCAACATTACCTGAAGCTGATCGAGAGCGAGGTGCTGTCCCAGGCATCCAAGGAGAGATTTCAAAGATCTGCCAAACATATGGGTTACGTCCCAAATCCGGGAACCCCTACATTACCCTCAGTTCAAGGGACATCAATAATAAGTGGGATACTgtaggtaacctgggttatactaaatgggagttctgttgtagcaagattgg Alignment from Spaln_aa2Genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctatgggcaaatgtggataatggcccttctctttcccccttttagAGCCTACTAACAGCACACGAACAATTCAAAGCAACATTACCTGAAGCTGATCGAGAGCGAGGTGCTGTCCCAGGCATCCAAGGAGAGATTTCAAAGATCTGCCAAACATATGGGTTACGTCCCAAATCCGGGAACCCCTACATTACCCTCAGTTCAAGGGACATCAATAATAAGTGGGATACTgtaggtaacctgggttatactaaatgggagttctgttgtagcaagattgg Alignment from Spaln_nt2Genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctatgggcaaatgtggataatggcccttctctttcccccttttagAGCCTACTAACAGCACACGAACAATTCAAAGCAACATTACCTGAAGCTGATCGAGAGCGAGGTGCTGTCCCAGGCATCCAAGGAGAGATTTCAAAGATCTGCCAAACATATGGGTTACGTCCCAAATCCGGGAACCCCTACATTACCCTCAGTTCAAGGGACATCAATAATAAGTGGGATACTgtaggtaacctgggttatactaaatgggagttctgttgtagcaagattgg Alignment from Pairagon AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctatgggcaaatgtggataatggcccttctctttcccccttttagAGCCTACTAACAGCACACGAACAATTCAAAGCAACATTACCTGAAGCTGATCGAGAGCGAGGTGCTGTCCCAGGCATCCAAGGAGAGATTTCAAAGATCTGCCAAACATATGGGTTACGTCCCAAATCCGGGAACCCCTACATTACCCTCAGTTCAAGGGACATCAATAATAAGTGGGATACTgtaggtaacctgggttatactaaatgggagttctgttgtagcaagattgg Alignment from Exonerate_protein2genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctatgggcaaatgtggataatggcccttctctttcccccttttagAGCCTACTAACAGCACACGAACAATTCAAAGCAACATTACCTGAAGCTGATCGAGAGCGAGGTGCTGTCCCAGGCATCCAAGGAGAGATTTCAAAGATCTGCCAAACATATGGGTTACGTCCCAAATCCGGGAACCCCTACATTACCCTCAGTTCAAGGGACATCAATAATAAGTGGGATACTgtaggtaacctgggttatactaaatgggagttctgttgtagcaagattgg Alignment from Exonerate_coding2genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctatgggcaaatgtggataatggcccttctctttcccccttttagAGCCTACTAACAGCACACGAACAATTCAAAGCAACATTACCTGAAGCTGATCGAGAGCGAGGTGCTGTCCCAGGCATCCAAGGAGAGATTTCAAAGATCTGCCAAACATATGGGTTACGTCCCAAATCCGGGAACCCCTACATTACCCTCAGTTCAAGGGACATCAATAATAAGTGGGATACTgtaggtaacctgggttatactaaatgggagttctgttgtagcaagattgg Alignment from GeneWise AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctatgggcaaatgtggataatggcccttctctttcccccttttagAGCCTACTAACAGCACACGAACAATTCAAAGCAACATTACCTGAAGCTGATCGAGAGCGAGGTGCTGTCCCAGGCATCCAAGGAGAGATTTCAAAGATCTGCCAAACATATGGGTTACGTCCCAAATCCGGGAACCCCTACATTACCCTCAGTTCAAGGGACATCAATAATAAGTGGGATACTgtaggtaacctgggttatactaaatgggagttctgttgtagcaagattgg #### Actn3_ID696_14 --> 0 - 0 Original Alignment AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTC---GTGCACTCTGTGGAGGAGACCCAG taatgtctgtagtctgaatgaacctggatagatgtgtttccctccaacagAAGATGGAGAAGCTCCTGGAGACGATTGACCAGCTGCAGCTAGAACTTGCTCGCAGGGCAGCTTCCTTTAATAACTGGTTTGATGGTGCTGTTGAGGATCTGCATGATGTGTGGCTAGTGGTTCACTCCGTGGAGGAGACAGAAgtgagtgaacacactaggcaggaaacccttggatgcacttgtggcctaga Alignment from CESAR AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTG---CACTCTGTGGAGGAGACCCAG taatgtctgtagtctgaatgaacctggatagatgtgtttccctccaacagAAGATGGAGAAGCTCCTGGAGACGATTGACCAGCTGCAGCTAGAACTTGCTCGCAGGGCAGCTTCCTTTAATAACTGGTTTGATGGTGCTGTTGAGGATCTGCATGATGTGTGGCTAGTGGTTCACTCCGTGGAGGAGACAGAAgtgagtgaacacactaggcaggaaacccttggatgcacttgtggcctaga Alignment from Spaln_aa2Genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTC---GTGCACTCTGTGGAGGAGACCCAG taatgtctgtagtctgaatgaacctggatagatgtgtttccctccaacagAAGATGGAGAAGCTCCTGGAGACGATTGACCAGCTGCAGCTAGAACTTGCTCGCAGGGCAGCTTCCTTTAATAACTGGTTTGATGGTGCTGTTGAGGATCTGCATGATGTGTGGCTAGTGGTTCACTCCGTGGAGGAGACAGAAgtgagtgaacacactaggcaggaaacccttggatgcacttgtggcctaga Alignment from Spaln_nt2Genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTG---CACTCTGTGGAGGAGACCCAG taatgtctgtagtctgaatgaacctggatagatgtgtttccctccaacagAAGATGGAGAAGCTCCTGGAGACGATTGACCAGCTGCAGCTAGAACTTGCTCGCAGGGCAGCTTCCTTTAATAACTGGTTTGATGGTGCTGTTGAGGATCTGCATGATGTGTGGCTAGTGGTTCACTCCGTGGAGGAGACAGAAgtgagtgaacacactaggcaggaaacccttggatgcacttgtggcctaga Alignment from Pairagon AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTG---CACTCTGTGGAGGAGACCCAG taatgtctgtagtctgaatgaacctggatagatgtgtttccctccaacagAAGATGGAGAAGCTCCTGGAGACGATTGACCAGCTGCAGCTAGAACTTGCTCGCAGGGCAGCTTCCTTTAATAACTGGTTTGATGGTGCTGTTGAGGATCTGCATGATGTGTGGCTAGTGGTTCACTCCGTGGAGGAGACAGAAgtgagtgaacacactaggcaggaaacccttggatgcacttgtggcctaga Alignment from Exonerate_protein2genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTC---GTGCACTCTGTGGAGGAGACCCAG taatgtctgtagtctgaatgaacctggatagatgtgtttccctccaacagAAGATGGAGAAGCTCCTGGAGACGATTGACCAGCTGCAGCTAGAACTTGCTCGCAGGGCAGCTTCCTTTAATAACTGGTTTGATGGTGCTGTTGAGGATCTGCATGATGTGTGGCTAGTGGTTCACTCCGTGGAGGAGACAGAAgtgagtgaacacactaggcaggaaacccttggatgcacttgtggcctaga Alignment from Exonerate_coding2genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTC---GTGCACTCTGTGGAGGAGACCCAG taatgtctgtagtctgaatgaacctggatagatgtgtttccctccaacagAAGATGGAGAAGCTCCTGGAGACGATTGACCAGCTGCAGCTAGAACTTGCTCGCAGGGCAGCTTCCTTTAATAACTGGTTTGATGGTGCTGTTGAGGATCTGCATGATGTGTGGCTAGTGGTTCACTCCGTGGAGGAGACAGAAgtgagtgaacacactaggcaggaaacccttggatgcacttgtggcctaga Alignment from GeneWise AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTG---CACTCTGTGGAGGAGACCCAG taatgtctgtagtctgaatgaacctggatagatgtgtttccctccaacagAAGATGGAGAAGCTCCTGGAGACGATTGACCAGCTGCAGCTAGAACTTGCTCGCAGGGCAGCTTCCTTTAATAACTGGTTTGATGGTGCTGTTGAGGATCTGCATGATGTGTGGCTAGTGGTTCACTCCGTGGAGGAGACAGAAgtgagtgaacacactaggcaggaaacccttggatgcacttgtggcctaga #### Actn3_ID697_13 --> 1 - 0 Original Alignment tGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG cataatacagcaacataccttgggtctgtagcaccccttgtgaactgtagcGAGCTTGACTACCATGAGGCAACTTCTGTGAACAGTCGGTGCCAAGCCATATCTGACCAGTGGGATAACCTGGGTACACTTACCCAGAAGAGAAGAGATGCGTTAGAGgtaaaaggtagtccaggagggaggtaaggccagtaatgtctgtagtctga Alignment from CESAR tGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG cataatacagcaacataccttgggtctgtagcaccccttgtgaactgtagcGAGCTTGACTACCATGAGGCAACTTCTGTGAACAGTCGGTGCCAAGCCATATCTGACCAGTGGGATAACCTGGGTACACTTACCCAGAAGAGAAGAGATGCGTTAGAGgtaaaaggtagtccaggagggaggtaaggccagtaatgtctgtagtctga Alignment from Spaln_aa2Genome TGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG cataatacagcaacataccttgggtctgtagcaccccttgtgaactgtagCGAGCTTGACTACCATGAGGCAACTTCTGTGAACAGTCGGTGCCAAGCCATATCTGACCAGTGGGATAACCTGGGTACACTTACCCAGAAGAGAAGAGATGCGTTAGAGgtaaaaggtagtccaggagggaggtaaggccagtaatgtctgtagtctga Alignment from Spaln_nt2Genome TGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG cataatacagcaacataccttgggtctgtagcaccccttgtgaactgtagCGAGCTTGACTACCATGAGGCAACTTCTGTGAACAGTCGGTGCCAAGCCATATCTGACCAGTGGGATAACCTGGGTACACTTACCCAGAAGAGAAGAGATGCGTTAGAGgtaaaaggtagtccaggagggaggtaaggccagtaatgtctgtagtctga Alignment from Pairagon TGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG cataatacagcaacataccttgggtctgtagcaccccttgtgaactgtagCGAGCTTGACTACCATGAGGCAACTTCTGTGAACAGTCGGTGCCAAGCCATATCTGACCAGTGGGATAACCTGGGTACACTTACCCAGAAGAGAAGAGATGCGTTAGAGgtaaaaggtagtccaggagggaggtaaggccagtaatgtctgtagtctga Alignment from Exonerate_protein2genome TGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG cataatacagcaacataccttgggtctgtagcaccccttgtgaactgtagCGAGCTTGACTACCATGAGGCAACTTCTGTGAACAGTCGGTGCCAAGCCATATCTGACCAGTGGGATAACCTGGGTACACTTACCCAGAAGAGAAGAGATGCGTTAGAGgtaaaaggtagtccaggagggaggtaaggccagtaatgtctgtagtctga Alignment from Exonerate_coding2genome TGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG cataatacagcaacataccttgggtctgtagcaccccttgtgaactgtagCGAGCTTGACTACCATGAGGCAACTTCTGTGAACAGTCGGTGCCAAGCCATATCTGACCAGTGGGATAACCTGGGTACACTTACCCAGAAGAGAAGAGATGCGTTAGAGgtaaaaggtagtccaggagggaggtaaggccagtaatgtctgtagtctga Alignment from GeneWise TGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG cataatacagcaacataccttgggtctgtagcaccccttgtgaactgtagCGAGCTTGACTACCATGAGGCAACTTCTGTGAACAGTCGGTGCCAAGCCATATCTGACCAGTGGGATAACCTGGGTACACTTACCCAGAAGAGAAGAGATGCGTTAGAGgtaaaaggtagtccaggagggaggtaaggccagtaatgtctgtagtctga #### Actn3_ID699_11 --> 0 - 1 Original Alignment GACATAGCCAATGCGTGGCGGGGACTGGAGCAGGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCGGAGATCAGGCGTCTGCAGAGGCTTCAGCACCTGGCTGAGAAGTTCCAACAGAAGGCTTCCCTGCATGAAGCTTGGACCCGGg gggtggaccttagttatttgttttggattcccttgccatgtgatccttagGACATAGCCAATGCTTGGCATGGGCTGAAGCAAGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCAGAGATCAGGTGTCTGCAGAGGCTTCAGCTCTTGGCTGAAAAATTCCAACAAAAGGCTTCTCTGCATGAAGCTTGGACTCGAggtaagctcaatacaatagcaaaggtacatacaactaggatagatgataaa Alignment from CESAR GACATAGCCAATGCGTGGCGGGGACTGGAGCAGGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCGGAGATCAGGCGTCTGCAGAGGCTTCAGCACCTGGCTGAGAAGTTCCAACAGAAGGCTTCCCTGCATGAAGCTTGGACCCGGg gggtggaccttagttatttgttttggattcccttgccatgtgatccttagGACATAGCCAATGCTTGGCATGGGCTGAAGCAAGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCAGAGATCAGGTGTCTGCAGAGGCTTCAGCTCTTGGCTGAAAAATTCCAACAAAAGGCTTCTCTGCATGAAGCTTGGACTCGAggtaagctcaatacaatagcaaaggtacatacaactaggatagatgataaa Alignment from Spaln_aa2Genome GACATAGCCAATGCGTGGCGGGGACTGGAGCAGGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCGGAGATCAGGCGTCTGCAGAGGCTTCAGCACCTGGCTGAGAAGTTCCAACAGAAGGCTTCCCTGCATGAAGCTTGGACCCGGG gggtggaccttagttatttgttttggattcccttgccatgtgatccttagGACATAGCCAATGCTTGGCATGGGCTGAAGCAAGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCAGAGATCAGGTGTCTGCAGAGGCTTCAGCTCTTGGCTGAAAAATTCCAACAAAAGGCTTCTCTGCATGAAGCTTGGACTCGAGgtaagctcaatacaatagcaaaggtacatacaactaggatagatgataaa Alignment from Spaln_nt2Genome GACATAGCCAATGCGTGGCGGGGACTGGAGCAGGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCGGAGATCAGGCGTCTGCAGAGGCTTCAGCACCTGGCTGAGAAGTTCCAACAGAAGGCTTCCCTGCATGAAGCTTGGACCCGGG gggtggaccttagttatttgttttggattcccttgccatgtgatccttagGACATAGCCAATGCTTGGCATGGGCTGAAGCAAGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCAGAGATCAGGTGTCTGCAGAGGCTTCAGCTCTTGGCTGAAAAATTCCAACAAAAGGCTTCTCTGCATGAAGCTTGGACTCGAGgtaagctcaatacaatagcaaaggtacatacaactaggatagatgataaa Alignment from Pairagon GACATAGCCAATGCGTGGCGGGGACTGGAGCAGGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCGGAGATCAGGCGTCTGCAGAGGCTTCAGCACCTGGCTGAGAAGTTCCAACAGAAGGCTTCCCTGCATGAAGCTTGGACCCGGG gggtggaccttagttatttgttttggattcccttgccatgtgatccttagGACATAGCCAATGCTTGGCATGGGCTGAAGCAAGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCAGAGATCAGGTGTCTGCAGAGGCTTCAGCTCTTGGCTGAAAAATTCCAACAAAAGGCTTCTCTGCATGAAGCTTGGACTCGAGgtaagctcaatacaatagcaaaggtacatacaactaggatagatgataaa Alignment from Exonerate_protein2genome GACATAGCCAATGCGTGGCGGGGACTGGAGCAGGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCGGAGATCAGGCGTCTGCAGAGGCTTCAGCACCTGGCTGAGAAGTTCCAACAGAAGGCTTCCCTGCATGAAGCTTGGACCCGGG gggtggaccttagttatttgttttggattcccttgccatgtgatccttagGACATAGCCAATGCTTGGCATGGGCTGAAGCAAGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCAGAGATCAGGTGTCTGCAGAGGCTTCAGCTCTTGGCTGAAAAATTCCAACAAAAGGCTTCTCTGCATGAAGCTTGGACTCGAGgtaagctcaatacaatagcaaaggtacatacaactaggatagatgataaa Alignment from Exonerate_coding2genome GACATAGCCAATGCGTGGCGGGGACTGGAGCAGGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCGGAGATCAGGCGTCTGCAGAGGCTTCAGCACCTGGCTGAGAAGTTCCAACAGAAGGCTTCCCTGCATGAAGCTTGGACCCGGG gggtggaccttagttatttgttttggattcccttgccatgtgatccttagGACATAGCCAATGCTTGGCATGGGCTGAAGCAAGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCAGAGATCAGGTGTCTGCAGAGGCTTCAGCTCTTGGCTGAAAAATTCCAACAAAAGGCTTCTCTGCATGAAGCTTGGACTCGAGgtaagctcaatacaatagcaaaggtacatacaactaggatagatgataaa Alignment from GeneWise GACATAGCCAATGCGTGGCGGGGACTGGAGCAGGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCGGAGATCAGGCGTCTGCAGAGGCTTCAGCACCTGGCTGAGAAGTTCCAACAGAAGGCTTCCCTGCATGAAGCTTGGACCCGGG gggtggaccttagttatttgttttggattcccttgccatgtgatccttagGACATAGCCAATGCTTGGCATGGGCTGAAGCAAGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCAGAGATCAGGTGTCTGCAGAGGCTTCAGCTCTTGGCTGAAAAATTCCAACAAAAGGCTTCTCTGCATGAAGCTTGGACTCGAGgtaagctcaatacaatagcaaaggtacatacaactaggatagatgataaa #### Actn3_ID701_9 --> 0 - 0 Original Alignment GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG tttttttggtatagcattgtaagagctacgctgcctctctttacttacagGCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTGCCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAGTATGCAAAACTGGCCAGTGAGgtgagcttagactacagtccaagaactccttcccagtgtttcctcagtgt Alignment from CESAR GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG tttttttggtatagcattgtaagagctacgctgcctctctttacttacagGCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTGCCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAGTATGCAAAACTGGCCAGTGAGgtgagcttagactacagtccaagaactccttcccagtgtttcctcagtgt Alignment from Spaln_aa2Genome GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG tttttttggtatagcattgtaagagctacgctgcctctctttacttacagGCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTGCCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAGTATGCAAAACTGGCCAGTGAGgtgagcttagactacagtccaagaactccttcccagtgtttcctcagtgt Alignment from Spaln_nt2Genome GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG tttttttggtatagcattgtaagagctacgctgcctctctttacttacagGCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTGCCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAGTATGCAAAACTGGCCAGTGAGgtgagcttagactacagtccaagaactccttcccagtgtttcctcagtgt Alignment from Pairagon GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG tttttttggtatagcattgtaagagctacgctgcctctctttacttacagGCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTGCCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAGTATGCAAAACTGGCCAGTGAGgtgagcttagactacagtccaagaactccttcccagtgtttcctcagtgt Alignment from Exonerate_protein2genome GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG tttttttggtatagcattgtaagagctacgctgcctctctttacttacagGCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTGCCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAGTATGCAAAACTGGCCAGTGAGgtgagcttagactacagtccaagaactccttcccagtgtttcctcagtgt Alignment from Exonerate_coding2genome GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG tttttttggtatagcattgtaagagctacgctgcctctctttacttacagGCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTGCCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAGTATGCAAAACTGGCCAGTGAGgtgagcttagactacagtccaagaactccttcccagtgtttcctcagtgt Alignment from GeneWise GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG tttttttggtatagcattgtaagagctacgctgcctctctttacttacagGCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTGCCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAGTATGCAAAACTGGCCAGTGAGgtgagcttagactacagtccaagaactccttcccagtgtttcctcagtgt #### Actn3_ID705_5 --> 2 - 2 Original Alignment agACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCag tgcaaaatgcctagttgggccagatcattcttctttccaatttgcttcagagGCTGCATCCAAACAGGGCTTGTTCCTCTGGTGCCAGCGGAAAATAGCTCCATACCGCAATGTTAATGTACAGAACTTCCATACTaggtagggatcctgagtatagtagttgggatctattaaagtgaaggatggca Alignment from CESAR agACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCag tgcaaaatgcctagttgggccagatcattcttctttccaatttgcttcagagGCTGCATCCAAACAGGGCTTGTTCCTCTGGTGCCAGCGGAAAATAGCTCCATACCGCAATGTTAATGTACAGAACTTCCATACTaggtagggatcctgagtatagtagttgggatctattaaagtgaaggatggca Alignment from Spaln_aa2Genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgcaaaatgcctagttgggccagatcattcttctttccaatttgcttcagAGGCTGCATCCAAACAGGGCTTGTTCCTCTGGTGCCAGCGGAAAATAGCTCCATACCGCAATGTTAATGTACAGAACTTCCATACTAGgtagggatcctgagtatagtagttgggatctattaaagtgaaggatggca Alignment from Spaln_nt2Genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgcaaaatgcctagttgggccagatcattcttctttccaatttgcttcagAGGCTGCATCCAAACAGGGCTTGTTCCTCTGGTGCCAGCGGAAAATAGCTCCATACCGCAATGTTAATGTACAGAACTTCCATACTAGgtagggatcctgagtatagtagttgggatctattaaagtgaaggatggca Alignment from Pairagon AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgcaaaatgcctagttgggccagatcattcttctttccaatttgcttcagAGGCTGCATCCAAACAGGGCTTGTTCCTCTGGTGCCAGCGGAAAATAGCTCCATACCGCAATGTTAATGTACAGAACTTCCATACTAGgtagggatcctgagtatagtagttgggatctattaaagtgaaggatggca Alignment from Exonerate_protein2genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgcaaaatgcctagttgggccagatcattcttctttccaatttgcttcagAGGCTGCATCCAAACAGGGCTTGTTCCTCTGGTGCCAGCGGAAAATAGCTCCATACCGCAATGTTAATGTACAGAACTTCCATACTAGgtagggatcctgagtatagtagttgggatctattaaagtgaaggatggca Alignment from Exonerate_coding2genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgcaaaatgcctagttgggccagatcattcttctttccaatttgcttcagAGGCTGCATCCAAACAGGGCTTGTTCCTCTGGTGCCAGCGGAAAATAGCTCCATACCGCAATGTTAATGTACAGAACTTCCATACTAGgtagggatcctgagtatagtagttgggatctattaaagtgaaggatggca Alignment from GeneWise AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgcaaaatgcctagttgggccagatcattcttctttccaatttgcttcagAGGCTGCATCCAAACAGGGCTTGTTCCTCTGGTGCCAGCGGAAAATAGCTCCATACCGCAATGTTAATGTACAGAACTTCCATACTAGgtagggatcctgagtatagtagttgggatctattaaagtgaaggatggca #### Actr1a_ID9870_10 --> 0 - 2 Original Alignment ATATCTGCACCCCAGGAGAGACTGTATTCCACATGGATTgg gtcatgtttgatgtggcctagagtgtaaaagcaccttttctctctctcagATATCTGCCCCCCAGGAGCAACTATATTCCACATGGATCgggtatgtggccattattatggaataagatgggaaagaaaagctcctgctct Alignment from CESAR ATATCTGCACCCCAGGAGAGACTGTATTCCACATGGATTgg gtcatgtttgatgtggcctagagtgtaaaagcaccttttctctctctcagATATCTGCCCCCCAGGAGCAACTATATTCCACATGGATCgggtatgtggccattattatggaataagatgggaaagaaaagctcctgctct Alignment from Spaln_aa2Genome ATATCTGCACCCCAGGAGAGACTGTATTCCACATGGATTGG gtcatgtttgatgtggcctagagtgtaaaagcaccttttctctctctcagATATCTGCCCCCCAGGAGCAACTATATTCCACATGGATCGGgtatgtggccattattatggaataagatgggaaagaaaagctcctgctct Alignment from Spaln_nt2Genome ATATCTGCACCCCAGGAGAGACTGTATTCCACATGGATTGG gtcatgtttgatgtggcctagagtgtaaaagcaccttttctctctctcagATATCTGCCCCCCAGGAGCAACTATATTCCACATGGATCGGgtatgtggccattattatggaataagatgggaaagaaaagctcctgctct Alignment from Pairagon ATATCTGCACCCCAGGAGAGACTGTATTCCACATGGATTGG gtcatgtttgatgtggcctagagtgtaaaagcaccttttctctctctcagATATCTGCCCCCCAGGAGCAACTATATTCCACATGGATCGGgtatgtggccattattatggaataagatgggaaagaaaagctcctgctct Alignment from Exonerate_protein2genome ATATCTGCACCCCAGGAGAGACTGTATTCCACATGGATTGG gtcatgtttgatgtggcctagagtgtaaaagcaccttttctctctctcagATATCTGCCCCCCAGGAGCAACTATATTCCACATGGATCGGgtatgtggccattattatggaataagatgggaaagaaaagctcctgctct Alignment from Exonerate_coding2genome ATATCTGCACCCCAGGAGAGACTGTATTCCACATGGATTGG gtcatgtttgatgtggcctagagtgtaaaagcaccttttctctctctcagATATCTGCCCCCCAGGAGCAACTATATTCCACATGGATCGGgtatgtggccattattatggaataagatgggaaagaaaagctcctgctct Alignment from GeneWise ATATCTGCACCCCAGGAGAGACTGTATTCCACATGGATTGG gtcatgtttgatgtggcctagagtgtaaaagcaccttttctctctctcagATATCTGCCCCCCAGGAGCAACTATATTCCACATGGATCGGgtatgtggccattattatggaataagatgggaaagaaaagctcctgctct #### Actr1a_ID9875_5 --> 0 - 2 Original Alignment CATCCTGTGCTCCTAACGGAGGCACCTTTAAACCCTCGGAAAAACCGGGAGCGAGCTGCAGAAGTCTTCTTCGAGACCTTCAATGTGCCGGCCCTCTTCATCTCCATGCAAGCCGTGCTGAGCct aaccctattgccttagcactactttgtgtcccccccttgctgttcaccagCAACCTGTACTCCTAACAGAGGCACCTTTAAACCACCAGAAAAACCGGGAGCGAGCTGCAGAAGTCATCTTTGAGACCTTCAATGTGCCTGCCCTGTTCATCTCCATGCAAGCTGTGCTGAGCctgtgaggtgcagctatgcgcagttggccttaaattgggacacaccttggga Alignment from CESAR CATCCTGTGCTCCTAACGGAGGCACCTTTAAACCCTCGGAAAAACCGGGAGCGAGCTGCAGAAGTCTTCTTCGAGACCTTCAATGTGCCGGCCCTCTTCATCTCCATGCAAGCCGTGCTGAGCct aaccctattgccttagcactactttgtgtcccccccttgctgttcaccagCAACCTGTACTCCTAACAGAGGCACCTTTAAACCACCAGAAAAACCGGGAGCGAGCTGCAGAAGTCATCTTTGAGACCTTCAATGTGCCTGCCCTGTTCATCTCCATGCAAGCTGTGCTGAGCctgtgaggtgcagctatgcgcagttggccttaaattgggacacaccttggga Alignment from Spaln_aa2Genome CATCCTGTGCTCCTAACGGAGGCACCTTTAAACCCTCGGAAAAACCGGGAGCGAGCTGCAGAAGTCTTCTTCGAGACCTTCAATGTGCCGGCCCTCTTCATCTCCATGCAAGCCGTGCTGAGCCT aaccctattgccttagcactactttgtgtcccccccttgctgttcaccagCAACCTGTACTCCTAACAGAGGCACCTTTAAACCACCAGAAAAACCGGGAGCGAGCTGCAGAAGTCATCTTTGAGACCTTCAATGTGCCTGCCCTGTTCATCTCCATGCAAGCTGTGCTGAGCCTgtgaggtgcagctatgcgcagttggccttaaattgggacacaccttggga Alignment from Spaln_nt2Genome CATCCTGTGCTCCTAACGGAGGCACCTTTAAACCCTCGGAAAAACCGGGAGCGAGCTGCAGAAGTCTTCTTCGAGACCTTCAATGTGCCGGCCCTCTTCATCTCCATGCAAGCCGTGCTGAGCCT aaccctattgccttagcactactttgtgtcccccccttgctgttcaccagCAACCTGTACTCCTAACAGAGGCACCTTTAAACCACCAGAAAAACCGGGAGCGAGCTGCAGAAGTCATCTTTGAGACCTTCAATGTGCCTGCCCTGTTCATCTCCATGCAAGCTGTGCTGAGCCTgtgaggtgcagctatgcgcagttggccttaaattgggacacaccttggga Alignment from Pairagon CATCCTGTGCTCCTAACGGAGGCACCTTTAAACCCTCGGAAAAACCGGGAGCGAGCTGCAGAAGTCTTCTTCGAGACCTTCAATGTGCCGGCCCTCTTCATCTCCATGCAAGCCGTGCTGAGCCT aaccctattgccttagcactactttgtgtcccccccttgctgttcaccagCAACCTGTACTCCTAACAGAGGCACCTTTAAACCACCAGAAAAACCGGGAGCGAGCTGCAGAAGTCATCTTTGAGACCTTCAATGTGCCTGCCCTGTTCATCTCCATGCAAGCTGTGCTGAGCCTgtgaggtgcagctatgcgcagttggccttaaattgggacacaccttggga Alignment from Exonerate_protein2genome CATCCTGTGCTCCTAACGGAGGCACCTTTAAACCCTCGGAAAAACCGGGAGCGAGCTGCAGAAGTCTTCTTCGAGACCTTCAATGTGCCGGCCCTCTTCATCTCCATGCAAGCCGTGCTGAGCCT aaccctattgccttagcactactttgtgtcccccccttgctgttcaccagCAACCTGTACTCCTAACAGAGGCACCTTTAAACCACCAGAAAAACCGGGAGCGAGCTGCAGAAGTCATCTTTGAGACCTTCAATGTGCCTGCCCTGTTCATCTCCATGCAAGCTGTGCTGAGCCTgtgaggtgcagctatgcgcagttggccttaaattgggacacaccttggga Alignment from Exonerate_coding2genome CATCCTGTGCTCCTAACGGAGGCACCTTTAAACCCTCGGAAAAACCGGGAGCGAGCTGCAGAAGTCTTCTTCGAGACCTTCAATGTGCCGGCCCTCTTCATCTCCATGCAAGCCGTGCTGAGCCT aaccctattgccttagcactactttgtgtcccccccttgctgttcaccagCAACCTGTACTCCTAACAGAGGCACCTTTAAACCACCAGAAAAACCGGGAGCGAGCTGCAGAAGTCATCTTTGAGACCTTCAATGTGCCTGCCCTGTTCATCTCCATGCAAGCTGTGCTGAGCCTgtgaggtgcagctatgcgcagttggccttaaattgggacacaccttggga Alignment from GeneWise CATCCTGTGCTCCTAACGGAGGCACCTTTAAACCCTCGGAAAAACCGGGAGCGAGCTGCAGAAGTCTTCTTCGAGACCTTCAATGTGCCGGCCCTCTTCATCTCCATGCAAGCCGTGCTGAGCCT aaccctattgccttagcactactttgtgtcccccccttgctgttcaccagCAACCTGTACTCCTAACAGAGGCACCTTTAAACCACCAGAAAAACCGGGAGCGAGCTGCAGAAGTCATCTTTGAGACCTTCAATGTGCCTGCCCTGTTCATCTCCATGCAAGCTGTGCTGAGCCTgtgaggtgcagctatgcgcagttggccttaaattgggacacaccttggga #### Actr1a_ID9876_4 --> 0 - 0 Original Alignment GAGCACCGGGGGCTGCTGTCAATCCGTTACCCCATGGAACATGGCATCGTCAAGGACTGGAACGACATGGAACGCATCTGGCAATACGTCTACTCTAAGGACCAGCTGCAGACTTTCTCAGAGGAG ttcaagctatagttctagcctgtagtgcttaataccgtgtctcttctcagGAACACCGGGGGCTCCTATCAATTTGCTACCCCATGGAGCATGGTATTGTCAAGGACTGGAATGACATAGAACGAATCTGGCAATTTGTTTATTCTAAGGACCAGCTACAGACCTTCTCTGAGGAGgtgagtcacctgttctgatatactccttggtgggatgctccattaggcta Alignment from CESAR GAGCACCGGGGGCTGCTGTCAATCCGTTACCCCATGGAACATGGCATCGTCAAGGACTGGAACGACATGGAACGCATCTGGCAATACGTCTACTCTAAGGACCAGCTGCAGACTTTCTCAGAGGAG ttcaagctatagttctagcctgtagtgcttaataccgtgtctcttctcagGAACACCGGGGGCTCCTATCAATTTGCTACCCCATGGAGCATGGTATTGTCAAGGACTGGAATGACATAGAACGAATCTGGCAATTTGTTTATTCTAAGGACCAGCTACAGACCTTCTCTGAGGAGgtgagtcacctgttctgatatactccttggtgggatgctccattaggcta Alignment from Spaln_aa2Genome GAGCACCGGGGGCTGCTGTCAATCCGTTACCCCATGGAACATGGCATCGTCAAGGACTGGAACGACATGGAACGCATCTGGCAATACGTCTACTCTAAGGACCAGCTGCAGACTTTCTCAGAGGAG ttcaagctatagttctagcctgtagtgcttaataccgtgtctcttctcagGAACACCGGGGGCTCCTATCAATTTGCTACCCCATGGAGCATGGTATTGTCAAGGACTGGAATGACATAGAACGAATCTGGCAATTTGTTTATTCTAAGGACCAGCTACAGACCTTCTCTGAGGAGgtgagtcacctgttctgatatactccttggtgggatgctccattaggcta Alignment from Spaln_nt2Genome GAGCACCGGGGGCTGCTGTCAATCCGTTACCCCATGGAACATGGCATCGTCAAGGACTGGAACGACATGGAACGCATCTGGCAATACGTCTACTCTAAGGACCAGCTGCAGACTTTCTCAGAGGAG ttcaagctatagttctagcctgtagtgcttaataccgtgtctcttctcagGAACACCGGGGGCTCCTATCAATTTGCTACCCCATGGAGCATGGTATTGTCAAGGACTGGAATGACATAGAACGAATCTGGCAATTTGTTTATTCTAAGGACCAGCTACAGACCTTCTCTGAGGAGgtgagtcacctgttctgatatactccttggtgggatgctccattaggcta Alignment from Pairagon GAGCACCGGGGGCTGCTGTCAATCCGTTACCCCATGGAACATGGCATCGTCAAGGACTGGAACGACATGGAACGCATCTGGCAATACGTCTACTCTAAGGACCAGCTGCAGACTTTCTCAGAGGAG ttcaagctatagttctagcctgtagtgcttaataccgtgtctcttctcagGAACACCGGGGGCTCCTATCAATTTGCTACCCCATGGAGCATGGTATTGTCAAGGACTGGAATGACATAGAACGAATCTGGCAATTTGTTTATTCTAAGGACCAGCTACAGACCTTCTCTGAGGAGgtgagtcacctgttctgatatactccttggtgggatgctccattaggcta Alignment from Exonerate_protein2genome GAGCACCGGGGGCTGCTGTCAATCCGTTACCCCATGGAACATGGCATCGTCAAGGACTGGAACGACATGGAACGCATCTGGCAATACGTCTACTCTAAGGACCAGCTGCAGACTTTCTCAGAGGAG ttcaagctatagttctagcctgtagtgcttaataccgtgtctcttctcagGAACACCGGGGGCTCCTATCAATTTGCTACCCCATGGAGCATGGTATTGTCAAGGACTGGAATGACATAGAACGAATCTGGCAATTTGTTTATTCTAAGGACCAGCTACAGACCTTCTCTGAGGAGgtgagtcacctgttctgatatactccttggtgggatgctccattaggcta Alignment from Exonerate_coding2genome GAGCACCGGGGGCTGCTGTCAATCCGTTACCCCATGGAACATGGCATCGTCAAGGACTGGAACGACATGGAACGCATCTGGCAATACGTCTACTCTAAGGACCAGCTGCAGACTTTCTCAGAGGAG ttcaagctatagttctagcctgtagtgcttaataccgtgtctcttctcagGAACACCGGGGGCTCCTATCAATTTGCTACCCCATGGAGCATGGTATTGTCAAGGACTGGAATGACATAGAACGAATCTGGCAATTTGTTTATTCTAAGGACCAGCTACAGACCTTCTCTGAGGAGgtgagtcacctgttctgatatactccttggtgggatgctccattaggcta Alignment from GeneWise GAGCACCGGGGGCTGCTGTCAATCCGTTACCCCATGGAACATGGCATCGTCAAGGACTGGAACGACATGGAACGCATCTGGCAATACGTCTACTCTAAGGACCAGCTGCAGACTTTCTCAGAGGAG ttcaagctatagttctagcctgtagtgcttaataccgtgtctcttctcagGAACACCGGGGGCTCCTATCAATTTGCTACCCCATGGAGCATGGTATTGTCAAGGACTGGAATGACATAGAACGAATCTGGCAATTTGTTTATTCTAAGGACCAGCTACAGACCTTCTCTGAGGAGgtgagtcacctgttctgatatactccttggtgggatgctccattaggcta #### Add3_ID11216_8 --> 0 - 0 Original Alignment GTGCAGGCAGTAGCAGGGGCAGGCGGAGTAGACAATCTGCTCGTACTGGATCTTCAGAAATATAAAGCTTTCACCCACGGTGTCGCCATGTCTGGAGGAGGCGGTGTAAACATGGCTTCCCATCAGAAGTGGAAGGTTGGCGAGATTGAGTTTGAAGGGCTGATGAGGACCCTGGACAACTTG actacccttgaattggttctcagtgctgggaggtgtctgctcgctcctagGTGCAAGCAGTTGCAGGGGCAGGTGGAATTGTCAATCTGCTGGTACTGGATCTTCAGATATTTAAAGCTTTTACACATGGCATTACAATGTCTGGAGGGGGTGGTGTAAACATGGCATCCCATCAGAAATGGAGGGTTGGGGAAATTGAATTTGAAGGGCAGATGAGAACATTGGACAACCTAgtaacgtagacttgacaaaggccggagctagccccctgatgatgacggca Alignment from CESAR GTGCAGGCAGTAGCAGGGGCAGGCGGAGTAGACAATCTGCTCGTACTGGATCTTCAGAAATATAAAGCTTTCACCCACGGTGTCGCCATGTCTGGAGGAGGCGGTGTAAACATGGCTTCCCATCAGAAGTGGAAGGTTGGCGAGATTGAGTTTGAAGGGCTGATGAGGACCCTGGACAACTTG actacccttgaattggttctcagtgctgggaggtgtctgctcgctcctagGTGCAAGCAGTTGCAGGGGCAGGTGGAATTGTCAATCTGCTGGTACTGGATCTTCAGATATTTAAAGCTTTTACACATGGCATTACAATGTCTGGAGGGGGTGGTGTAAACATGGCATCCCATCAGAAATGGAGGGTTGGGGAAATTGAATTTGAAGGGCAGATGAGAACATTGGACAACCTAgtaacgtagacttgacaaaggccggagctagccccctgatgatgacggca Alignment from Spaln_aa2Genome GTGCAGGCAGTAGCAGGGGCAGGCGGAGTAGACAATCTGCTCGTACTGGATCTTCAGAAATATAAAGCTTTCACCCACGGTGTCGCCATGTCTGGAGGAGGCGGTGTAAACATGGCTTCCCATCAGAAGTGGAAGGTTGGCGAGATTGAGTTTGAAGGGCTGATGAGGACCCTGGACAACTTG actacccttgaattggttctcagtgctgggaggtgtctgctcgctcctagGTGCAAGCAGTTGCAGGGGCAGGTGGAATTGTCAATCTGCTGGTACTGGATCTTCAGATATTTAAAGCTTTTACACATGGCATTACAATGTCTGGAGGGGGTGGTGTAAACATGGCATCCCATCAGAAATGGAGGGTTGGGGAAATTGAATTTGAAGGGCAGATGAGAACATTGGACAACCTAgtaacgtagacttgacaaaggccggagctagccccctgatgatgacggca Alignment from Spaln_nt2Genome GTGCAGGCAGTAGCAGGGGCAGGCGGAGTAGACAATCTGCTCGTACTGGATCTTCAGAAATATAAAGCTTTCACCCACGGTGTCGCCATGTCTGGAGGAGGCGGTGTAAACATGGCTTCCCATCAGAAGTGGAAGGTTGGCGAGATTGAGTTTGAAGGGCTGATGAGGACCCTGGACAACTTG actacccttgaattggttctcagtgctgggaggtgtctgctcgctcctagGTGCAAGCAGTTGCAGGGGCAGGTGGAATTGTCAATCTGCTGGTACTGGATCTTCAGATATTTAAAGCTTTTACACATGGCATTACAATGTCTGGAGGGGGTGGTGTAAACATGGCATCCCATCAGAAATGGAGGGTTGGGGAAATTGAATTTGAAGGGCAGATGAGAACATTGGACAACCTAgtaacgtagacttgacaaaggccggagctagccccctgatgatgacggca Alignment from Pairagon GTGCAGGCAGTAGCAGGGGCAGGCGGAGTAGACAATCTGCTCGTACTGGATCTTCAGAAATATAAAGCTTTCACCCACGGTGTCGCCATGTCTGGAGGAGGCGGTGTAAACATGGCTTCCCATCAGAAGTGGAAGGTTGGCGAGATTGAGTTTGAAGGGCTGATGAGGACCCTGGACAACTTG actacccttgaattggttctcagtgctgggaggtgtctgctcgctcctagGTGCAAGCAGTTGCAGGGGCAGGTGGAATTGTCAATCTGCTGGTACTGGATCTTCAGATATTTAAAGCTTTTACACATGGCATTACAATGTCTGGAGGGGGTGGTGTAAACATGGCATCCCATCAGAAATGGAGGGTTGGGGAAATTGAATTTGAAGGGCAGATGAGAACATTGGACAACCTAgtaacgtagacttgacaaaggccggagctagccccctgatgatgacggca Alignment from Exonerate_protein2genome GTGCAGGCAGTAGCAGGGGCAGGCGGAGTAGACAATCTGCTCGTACTGGATCTTCAGAAATATAAAGCTTTCACCCACGGTGTCGCCATGTCTGGAGGAGGCGGTGTAAACATGGCTTCCCATCAGAAGTGGAAGGTTGGCGAGATTGAGTTTGAAGGGCTGATGAGGACCCTGGACAACTTG actacccttgaattggttctcagtgctgggaggtgtctgctcgctcctagGTGCAAGCAGTTGCAGGGGCAGGTGGAATTGTCAATCTGCTGGTACTGGATCTTCAGATATTTAAAGCTTTTACACATGGCATTACAATGTCTGGAGGGGGTGGTGTAAACATGGCATCCCATCAGAAATGGAGGGTTGGGGAAATTGAATTTGAAGGGCAGATGAGAACATTGGACAACCTAgtaacgtagacttgacaaaggccggagctagccccctgatgatgacggca Alignment from Exonerate_coding2genome GTGCAGGCAGTAGCAGGGGCAGGCGGAGTAGACAATCTGCTCGTACTGGATCTTCAGAAATATAAAGCTTTCACCCACGGTGTCGCCATGTCTGGAGGAGGCGGTGTAAACATGGCTTCCCATCAGAAGTGGAAGGTTGGCGAGATTGAGTTTGAAGGGCTGATGAGGACCCTGGACAACTTG actacccttgaattggttctcagtgctgggaggtgtctgctcgctcctagGTGCAAGCAGTTGCAGGGGCAGGTGGAATTGTCAATCTGCTGGTACTGGATCTTCAGATATTTAAAGCTTTTACACATGGCATTACAATGTCTGGAGGGGGTGGTGTAAACATGGCATCCCATCAGAAATGGAGGGTTGGGGAAATTGAATTTGAAGGGCAGATGAGAACATTGGACAACCTAgtaacgtagacttgacaaaggccggagctagccccctgatgatgacggca Alignment from GeneWise GTGCAGGCAGTAGCAGGGGCAGGCGGAGTAGACAATCTGCTCGTACTGGATCTTCAGAAATATAAAGCTTTCACCCACGGTGTCGCCATGTCTGGAGGAGGCGGTGTAAACATGGCTTCCCATCAGAAGTGGAAGGTTGGCGAGATTGAGTTTGAAGGGCTGATGAGGACCCTGGACAACTTG actacccttgaattggttctcagtgctgggaggtgtctgctcgctcctagGTGCAAGCAGTTGCAGGGGCAGGTGGAATTGTCAATCTGCTGGTACTGGATCTTCAGATATTTAAAGCTTTTACACATGGCATTACAATGTCTGGAGGGGGTGGTGTAAACATGGCATCCCATCAGAAATGGAGGGTTGGGGAAATTGAATTTGAAGGGCAGATGAGAACATTGGACAACCTAgtaacgtagacttgacaaaggccggagctagccccctgatgatgacggca #### Adrbk1_ID476_19 --> 0 - 0 Original Alignment CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT gtgattatctgggtgcatcctaatttcatgtatctctaaccatccaacagCAAAGCCTT---ACAATGGAGGAAATTCAGTCTGTTGAAGGGGCAGAGATCAAGGAACACAAATGTCTACTGCTT---------------AAGCAATTTGTATTGCGGTGTGATgtgaggaaaacaaagggttgaggctgatggtgatgtttgaaggtacatgt Alignment from CESAR CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT gtgattatctgggtgcatcctaatttcatgtatctctaaccatccaacagCAAAGCCTT---ACAATGGAGGAAATTCAGTCTGTTGAAGGGGCAGAGATCAAGGAACACAAATGTCTACTGCTT---------------AAGCAATTTGTATTGCGGTGTGATgtgaggaaaacaaagggttgaggctgatggtgatgtttgaaggtacatgt Alignment from Spaln_aa2Genome AGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT gtgattatctgggtgcatcctaatttcatgtatctctaaccatccaacagCAAAGCCTTACAATGGAGGAAATTCAGTCTGTTGAAGGGGCAGAGATCAAGGAACACAAATGTCTACTGCTT---------------AAGCAATTTGTATTGCGGTGTGATgtgaggaaaacaaagggttgaggctgatggtgatgtttgaaggtacatgt Alignment from Spaln_nt2Genome CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT gtgattatctgggtgcatcctaatttcatgtatctctaaccatccaacagCAAAG---CCTTACAATGGAGGAAATTCAGTCTGTTGAAGGGGCAGAGATCAAGGAACACAAATGTCTACTGCTT---------------AAGCAATTTGTATTGCGGTGTGATgtgaggaaaacaaagggttgaggctgatggtgatgtttgaaggtacatgt Alignment from Pairagon CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT gtgattatctgggtgcatcctaatttcatgtatctctaaccatccaacagCAAAGCCTT---ACAATGGAGGAAATTCAGTCTGTTGAAGGGGCAGAGATCAAGGAACACAAATGTCTACTGCTT---------------AAGCAATTTGTATTGCGGTGTGATgtgaggaaaacaaagggttgaggctgatggtgatgtttgaaggtacatgt Alignment from Exonerate_protein2genome CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT gtgattatctgggtgcatcctaatttcatgtatctctaaccatccaaCAGCAAAGCCTTACAATGGAGGAAATTCAGTCTGTTGAAGGGGCAGAGATCAAGGAACACAAATGTCTACTGCTT---------------AAGCAATTTGTATTGCGGTGTGATgtgaggaaaacaaagggttgaggctgatggtgatgtttgaaggtacatgt Alignment from Exonerate_coding2genome CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT gtgattatctgggtgcatcctaatttcatgtatctctaaccatccaaCAGCAAAGCCTTACAATGGAGGAAATTCAGTCTGTTGAAGGGGCAGAGATCAAGGAACACAAATGTCTACTGCTT---------------AAGCAATTTGTATTGCGGTGTGATgtgaggaaaacaaagggttgaggctgatggtgatgtttgaaggtacatgt Alignment from GeneWise CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT gtgattatctgggtgcatcctaatttcatgtatctctaaccatccaacagCAAAGCCTT---ACAATGGAGGAAATTCAGTCTGTTGAAGGGGCAGAGATCAAGGAACACAAATGTCTACTGCTTAAG---------------CAATTTGTATTGCGGTGTGATgtgaggaaaacaaagggttgaggctgatggtgatgtttgaaggtacatgt #### Adrbk1_ID479_16 --> 0 - 0 Original Alignment TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG ctctctctgccactctctgctgcaatgacagttttccttctcttctgcagTATCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaagtaacccatgtagctcaggatcctgtttctggatcctgaagctgaa Alignment from CESAR TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG ctctctctgccactctctgctgcaatgacagttttccttctcttctgcagTATCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaagtaacccatgtagctcaggatcctgtttctggatcctgaagctgaa Alignment from Spaln_aa2Genome ctctctctgccactctctgctgcaatgacagttttccttctcttctgcagtatcctcctccactgatcccccaacgtggggaggtgaatgcagctgacgcttttgacattggctcctttgatgaggaggacacaaaaggaatcaaggtaagtaacccatgtagctcaggatcctgtttctggatcctgaagctgaa Alignment from Spaln_nt2Genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG ctctctctgccactctctgctgcaatgacagttttccttctcttctgcagTATCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaagtaacccatgtagctcaggatcctgtttctggatcctgaagctgaa Alignment from Pairagon TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG ctctctctgccactctctgctgcaatgacagttttccttctcttctgcagTATCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaagtaacccatgtagctcaggatcctgtttctggatcctgaagctgaa Alignment from Exonerate_protein2genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG ctctctctgccactctctgctgcaatgacagttttccttctcttctgcagTATCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaagtaacccatgtagctcaggatcctgtttctggatcctgaagctgaa Alignment from Exonerate_coding2genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG ctctctctgccactctctgctgcaatgacagttttccttctcttctgcagTATCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaagtaacccatgtagctcaggatcctgtttctggatcctgaagctgaa Alignment from GeneWise TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG ctctctctgccactctctgctgcaatgacagttttccttctcttctgcagTATCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaagtaacccatgtagctcaggatcctgtttctggatcctgaagctgaa #### Adrbk1_ID482_13 --> 1 - 0 Original Alignment aCACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ctctcagtctagtcctgctcacccaccctgttttcgtttctccactttagcCACAGTCACTTCCAGCAGCACAAGACAAAAGATACACATGACATTGACCGCATGACACTTACTATGgtaagtctaataggagcgttgagaactatgtcatacataatcataaatcc Alignment from CESAR aCACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ctctcagtctagtcctgctcacccaccctgttttcgtttctccactttagcCACAGTCACTTCCAGCAGCACAAGACAAAAGATACACATGACATTGACCGCATGACACTTACTATGgtaagtctaataggagcgttgagaactatgtcatacataatcataaatcc Alignment from Spaln_aa2Genome ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ctctcagtctagtcctgctcacccaccctgttttcgtttctccactttagCCACAGTCACTTCCAGCAGCACAAGACAAAAGATACACATGACATTGACCGCATGACACTTACTATGgtaagtctaataggagcgttgagaactatgtcatacataatcataaatcc Alignment from Spaln_nt2Genome ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ctctcagtctagtcctgctcacccaccctgttttcgtttctccactttagCCACAGTCACTTCCAGCAGCACAAGACAAAAGATACACATGACATTGACCGCATGACACTTACTATGgtaagtctaataggagcgttgagaactatgtcatacataatcataaatcc Alignment from Pairagon ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ctctcagtctagtcctgctcacccaccctgttttcgtttctccactttagCCACAGTCACTTCCAGCAGCACAAGACAAAAGATACACATGACATTGACCGCATGACACTTACTATGgtaagtctaataggagcgttgagaactatgtcatacataatcataaatcc Alignment from Exonerate_protein2genome ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ctctcagtctagtcctgctcacccaccctgttttcgtttctccactttagCCACAGTCACTTCCAGCAGCACAAGACAAAAGATACACATGACATTGACCGCATGACACTTACTATGgtaagtctaataggagcgttgagaactatgtcatacataatcataaatcc Alignment from Exonerate_coding2genome ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ctctcagtctagtcctgctcacccaccctgttttcgtttctccactttagCCACAGTCACTTCCAGCAGCACAAGACAAAAGATACACATGACATTGACCGCATGACACTTACTATGgtaagtctaataggagcgttgagaactatgtcatacataatcataaatcc Alignment from GeneWise ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ctctcagtctagtcctgctcacccaccctgttttcgtttctccactttagCCACAGTCACTTCCAGCAGCACAAGACAAAAGATACACATGACATTGACCGCATGACACTTACTATGgtaagtctaataggagcgttgagaactatgtcatacataatcataaatcc #### Adrbk1_ID486_9 --> 0 - 1 Original Alignment GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACg gtGGGGAC tcccacttagcttgccttctatgattcacatctctgtgtctgtattgcagGACTGTTCTTTCACTGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCTGGACCTTATGAATggtaagtcagtctagagaatgtgcccttcctcttgaacctcaggtGCAGAA Alignment from CESAR GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACg gtGGGGAC tcccacttagcttgccttctatgattcacatctctgtgtctgtattgcagGACTGTTCTTTCACTGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCTGGACCTTATGAATggtaagtcagtctagagaatgtcccttcggaccctccccccaggtGCAGAA Alignment from Spaln_aa2Genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC tcccacttagcttgccttctatgattcacatctctgtgtctgtattgcagGACTGTTCTTTCACTGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCTGGACCTTATGAATGgtaagtcagtctagagaatgtgcccttcctcttgaacctcagGTGCAGAA Alignment from Spaln_nt2Genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC tcccacttagcttgccttctatgattcacatctctgtgtctgtattgcagGACTGTTCTTTCACTGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCTGGACCTTATGAATGgtaagtcagtctagagaatgtgcccttcctcttgaacctcagGTGCAGAA Alignment from Pairagon GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC tcccacttagcttgccttctatgattcacatctctgtgtctgtattgcagGACTGTTCTTTCACTGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCTGGACCTTATGAATGgtaagtcagtctagagaatgtgcccttcctcttgaacctcagGTGCAGAA Alignment from Exonerate_protein2genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC tcccacttagcttgccttctatgattcacatctctgtgtctgtattgcagGACTGTTCTTTCACTGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCTGGACCTTATGAATGgtaagtcagtctagagaatgtgcccttcctcttgaacctcagGTGCAGAA Alignment from Exonerate_coding2genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC tcccacttagcttgccttctatgattcacatctctgtgtctgtattgcagGACTGTTCTTTCACTGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCTGGACCTTATGAATGgtaagtcagtctagagaatgtgcccttcctcttgaacctcagGTGCAGAA Alignment from GeneWise GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC tcccacttagcttgccttctatgattcacatctctgtgtctgtattgcagGACTGTTCTTTCACTGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCTGGACCTTATGAATGgtaagtcagtctagagaatgtgcccttcctcttgaacctcagGTGCAGAA #### Adrbk1_ID489_6 --> 1 - 0 Original Alignment tGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC attacacagtctggtacacctagtagtgttgtctgtctgccaccttctagtGATCAGTTCACACATTTCTGTCAATGGAAGAACATTGAGCTTAACATTCATgtaagtagcagtattccatgaatgcaactctaagtgcaatattggtgggc Alignment from CESAR tGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC attacacagtctggtacacctagtagtgttgtctgtctgccaccttctagtGATCAGTTCACACATTTCTGTCAATGGAAGAACATTGAGCTTAACATTCATgtaagtagcagtattccatgaatgcaactctaagtgcaatattggtgggc Alignment from Spaln_aa2Genome TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC attacacagtctggtacacctagtagtgttgtctgtctgccaccttctagTGATCAGTTCACACATTTCTGTCAATGGAAGAACATTGAGCTTAACATTCATgtaagtagcagtattccatgaatgcaactctaagtgcaatattggtgggc Alignment from Spaln_nt2Genome TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC attacacagtctggtacacctagtagtgttgtctgtctgccaccttctagTGATCAGTTCACACATTTCTGTCAATGGAAGAACATTGAGCTTAACATTCATgtaagtagcagtattccatgaatgcaactctaagtgcaatattggtgggc Alignment from Pairagon TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC attacacagtctggtacacctagtagtgttgtctgtctgccaccttctagTGATCAGTTCACACATTTCTGTCAATGGAAGAACATTGAGCTTAACATTCATgtaagtagcagtattccatgaatgcaactctaagtgcaatattggtgggc Alignment from Exonerate_protein2genome TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC attacacagtctggtacacctagtagtgttgtctgtctgccaccttctagTGATCAGTTCACACATTTCTGTCAATGGAAGAACATTGAGCTTAACATTCATgtaagtagcagtattccatgaatgcaactctaagtgcaatattggtgggc Alignment from Exonerate_coding2genome attacacagtctggtacacctagtagtgttgtctgtctgccaccttctagtgatcagttcacacatttctgtcaatggaagaacattgagcttaacattcatgtaagtagcagtattccatgaatgcaactctaagtgcaatattggtgggc Alignment from GeneWise TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC attacacagtctggtacacctagtagtgttgtctgtctgccaccttctagTGATCAGTTCACACATTTCTGTCAATGGAAGAACATTGAGCTTAACATTCATgtaagtagcagtattccatgaatgcaactctaagtgcaatattggtgggc #### Afap1l2_ID12244_19 --> 0 - 0 Original Alignment CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG taattaatacagacatgctaactttgcactttattgtcatttactcacagCCACAGCCCAAAGCCGCCACTCCTAATCCTCCACCA---GCTACACCAGTTAATTCAGCATCTGTACTAAAAAATAGGCCACTCTCTGTAATGGTTATAGGGAAAGGGACTGTCCTGCAGAAAGCCAAGgtaggttacctcattacgaattgtgttaagccacaaaatgtaccccctgt Alignment from CESAR CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG taattaatacagacatgctaactttgcactttattgtcatttactcacagCCACAGCCCAAAGCCGCCACTCCTAATCCTCCACCA---GCTACACCAGTTAATTCAGCATCTGTACTAAAAAATAGGCCACTCTCTGTAATGGTTATAGGGAAAGGGACTGTCCTGCAGAAAGCCAAGgtaggttacctcattacgaattgtgttaagccacaaaatgtaccccctgt Alignment from Spaln_aa2Genome CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG taattaatacagacatgctaactttgcactttattgtcatttactcacagCCACAGCCCAAAGCCGCCACTCCTAATCCTCCACCAGCT---ACACCAGTTAATTCAGCATCTGTACTAAAAAATAGGCCACTCTCTGTAATGGTTATAGGGAAAGGGACTGTCCTGCAGAAAGCCAAGgtaggttacctcattacgaattgtgttaagccacaaaatgtaccccctgt Alignment from Spaln_nt2Genome CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG taattaatacagacatgctaactttgcactttattgtcatttactcacagCCACAGCCCAAAGCCGCCACTCCTAATCCTCCACCAG---CTACACCAGTTAATTCAGCATCTGTACTAAAAAATAGGCCACTCTCTGTAATGGTTATAGGGAAAGGGACTGTCCTGCAGAAAGCCAAGgtaggttacctcattacgaattgtgttaagccacaaaatgtaccccctgt Alignment from Pairagon CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG taattaatacagacatgctaactttgcactttattgtcatttactcacagCCACAGCCCAAAGCCGCCACTCCTAATCCTCCACCAG---CTACACCAGTTAATTCAGCATCTGTACTAAAAAATAGGCCACTCTCTGTAATGGTTATAGGGAAAGGGACTGTCCTGCAGAAAGCCAAGgtaggttacctcattacgaattgtgttaagccacaaaatgtaccccctgt Alignment from Exonerate_protein2genome CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG taattaatacagacatgctaactttgcactttattgtcatttactcacagCCACAGCCCAAAGCCGCCACTCCTAATCCTCCACCA---GCTACACCAGTTAATTCAGCATCTGTACTAAAAAATAGGCCACTCTCTGTAATGGTTATAGGGAAAGGGACTGTCCTGCAGAAAGCCAAGgtaggttacctcattacgaattgtgttaagccacaaaatgtaccccctgt Alignment from Exonerate_coding2genome CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG taattaatacagacatgctaactttgcactttattgtcatttactcacagCCACAGCCCAAAGCCGCCACTCCTAATCCTCCACCA---GCTACACCAGTTAATTCAGCATCTGTACTAAAAAATAGGCCACTCTCTGTAATGGTTATAGGGAAAGGGACTGTCCTGCAGAAAGCCAAGgtaggttacctcattacgaattgtgttaagccacaaaatgtaccccctgt Alignment from GeneWise CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG taattaatacagacatgctaactttgcactttattgtcatttactcacagCCACAGCCCAAAGCCGCCACTCCTAATCCTCCACCA---GCTACACCAGTTAATTCAGCATCTGTACTAAAAAATAGGCCACTCTCTGTAATGGTTATAGGGAAAGGGACTGTCCTGCAGAAAGCCAAGgtaggttacctcattacgaattgtgttaagccacaaaatgtaccccctgt #### Afap1l2_ID12261_3 --> 2 - 1 Original Alignment ccCTGGAGCAGCTGCTGACAGAGCTGGACGACTTCCTTAAGGTCCTCGACCAGGAGAACCTGAGCAGTGCAGCCGTGCTGAAGAAGAGCGGCCTGTCAGAGCTCCTGCGGCTTTACACCAAGAGCAGCa ggcatggtgaatagtgtatgttggagtcatgtctgaattttgccatgtaggcTTGGAACAGTTGCTCACGGAGCTGGATGACTTCCTCAAAGTCCTTGACCAAGAAAATTTTAGCAGTGCAGCCGTCCTAAAGAAGAGTGGCCTATCTGAGCTCCTGTGGCTTTTTACCAAAAGCACCagtaactgtcatccaccatccccatgtagtttaggcaaatggagtaagctt Alignment from CESAR ccCTGGAGCAGCTGCTGACAGAGCTGGACGACTTCCTTAAGGTCCTCGACCAGGAGAACCTGAGCAGTGCAGCCGTGCTGAAGAAGAGCGGCCTGTCAGAGCTCCTGCGGCTTTACACCAAGAGCAGCa ggcatggtgaatagtgtatgttggagtcatgtctgaattttgccatgtaggcTTGGAACAGTTGCTCACGGAGCTGGATGACTTCCTCAAAGTCCTTGACCAAGAAAATTTTAGCAGTGCAGCCGTCCTAAAGAAGAGTGGCCTATCTGAGCTCCTGTGGCTTTTTACCAAAAGCACCagtaactgtcatccaccatccccatgtagtttaggcaaatggagtaagctt Alignment from Spaln_aa2Genome CCCTGGAGCAGCTGCTGACAGAGCTGGACGACTTCCTTAAGGTCCTCGACCAGGAGAACCTGAGCAGTGCAGCCGTGCTGAAGAAGAGCGGCCTGTCAGAGCTCCTGCGGCTTTACACCAAGAGCAGCA ggcatggtgaatagtgtatgttggagtcatgtctgaattttgccatgtagGCTTGGAACAGTTGCTCACGGAGCTGGATGACTTCCTCAAAGTCCTTGACCAAGAAAATTTTAGCAGTGCAGCCGTCCTAAAGAAGAGTGGCCTATCTGAGCTCCTGTGGCTTTTTACCAAAAGCACCAgtaactgtcatccaccatccccatgtagtttaggcaaatggagtaagctt Alignment from Spaln_nt2Genome CCCTGGAGCAGCTGCTGACAGAGCTGGACGACTTCCTTAAGGTCCTCGACCAGGAGAACCTGAGCAGTGCAGCCGTGCTGAAGAAGAGCGGCCTGTCAGAGCTCCTGCGGCTTTACACCAAGAGCAGCA ggcatggtgaatagtgtatgttggagtcatgtctgaattttgccatgtagGCTTGGAACAGTTGCTCACGGAGCTGGATGACTTCCTCAAAGTCCTTGACCAAGAAAATTTTAGCAGTGCAGCCGTCCTAAAGAAGAGTGGCCTATCTGAGCTCCTGTGGCTTTTTACCAAAAGCACCAgtaactgtcatccaccatccccatgtagtttaggcaaatggagtaagctt Alignment from Pairagon CCCTGGAGCAGCTGCTGACAGAGCTGGACGACTTCCTTAAGGTCCTCGACCAGGAGAACCTGAGCAGTGCAGCCGTGCTGAAGAAGAGCGGCCTGTCAGAGCTCCTGCGGCTTTACACCAAGAGCAGCA ggcatggtgaatagtgtatgttggagtcatgtctgaattttgccatgtagGCTTGGAACAGTTGCTCACGGAGCTGGATGACTTCCTCAAAGTCCTTGACCAAGAAAATTTTAGCAGTGCAGCCGTCCTAAAGAAGAGTGGCCTATCTGAGCTCCTGTGGCTTTTTACCAAAAGCACCAgtaactgtcatccaccatccccatgtagtttaggcaaatggagtaagctt Alignment from Exonerate_protein2genome CCCTGGAGCAGCTGCTGACAGAGCTGGACGACTTCCTTAAGGTCCTCGACCAGGAGAACCTGAGCAGTGCAGCCGTGCTGAAGAAGAGCGGCCTGTCAGAGCTCCTGCGGCTTTACACCAAGAGCAGCA ggcatggtgaatagtgtatgttggagtcatgtctgaattttgccatgtagGCTTGGAACAGTTGCTCACGGAGCTGGATGACTTCCTCAAAGTCCTTGACCAAGAAAATTTTAGCAGTGCAGCCGTCCTAAAGAAGAGTGGCCTATCTGAGCTCCTGTGGCTTTTTACCAAAAGCACCAgtaactgtcatccaccatccccatgtagtttaggcaaatggagtaagctt Alignment from Exonerate_coding2genome CCCTGGAGCAGCTGCTGACAGAGCTGGACGACTTCCTTAAGGTCCTCGACCAGGAGAACCTGAGCAGTGCAGCCGTGCTGAAGAAGAGCGGCCTGTCAGAGCTCCTGCGGCTTTACACCAAGAGCAGCA ggcatggtgaatagtgtatgttggagtcatgtctgaattttgccatgtagGCTTGGAACAGTTGCTCACGGAGCTGGATGACTTCCTCAAAGTCCTTGACCAAGAAAATTTTAGCAGTGCAGCCGTCCTAAAGAAGAGTGGCCTATCTGAGCTCCTGTGGCTTTTTACCAAAAGCACCAgtaactgtcatccaccatccccatgtagtttaggcaaatggagtaagctt Alignment from GeneWise CCCTGGAGCAGCTGCTGACAGAGCTGGACGACTTCCTTAAGGTCCTCGACCAGGAGAACCTGAGCAGTGCAGCCGTGCTGAAGAAGAGCGGCCTGTCAGAGCTCCTGCGGCTTTACACCAAGAGCAGCA ggcatggtgaatagtgtatgttggagtcatgtctgaattttgccatgtagGCTTGGAACAGTTGCTCACGGAGCTGGATGACTTCCTCAAAGTCCTTGACCAAGAAAATTTTAGCAGTGCAGCCGTCCTAAAGAAGAGTGGCCTATCTGAGCTCCTGTGGCTTTTTACCAAAAGCACCAgtaactgtcatccaccatccccatgtagtttaggcaaatggagtaagctt #### Ak3_ID6205_3 --> 2 - 0 Original Alignment gaTTTCCAAGGACACTTCCACAGGCAGAAGCCCTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTCAACGTGCCCTTTGAGGTCATTAAACAGCGCCTTACTGCTCGCTGGATACATCCTGCCAGTGGTCGAGTATACAACATTGAATTCAACCCTCCCAAGACTGTG ggcaaaccctgttcctagagggcatttttggtttctctcattgtttgcaggcTTTCCGAGGACACTTCCGCAGGCAGAGTCACTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTTAATGTCCCATTTGAAGTCATCAAACAGCGTCTCACTGCTCGCTGGATACACCCAGCAAGTGGTCGAGTACACAACATGGAGTTCAACCCTCCCAAGACTGTGgtaaggatgagtatgctcagcagacgttttagcaaaccaactgcactagc Alignment from CESAR gaTTTCCAAGGACACTTCCACAGGCAGAAGCCCTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTCAACGTGCCCTTTGAGGTCATTAAACAGCGCCTTACTGCTCGCTGGATACATCCTGCCAGTGGTCGAGTATACAACATTGAATTCAACCCTCCCAAGACTGTG ggcaaaccctgttcctagagggcatttttggtttctctcattgtttgcaggcTTTCCGAGGACACTTCCGCAGGCAGAGTCACTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTTAATGTCCCATTTGAAGTCATCAAACAGCGTCTCACTGCTCGCTGGATACACCCAGCAAGTGGTCGAGTACACAACATGGAGTTCAACCCTCCCAAGACTGTGgtaaggatgagtatgctcagcagacgttttagcaaaccaactgcactagc Alignment from Spaln_aa2Genome GATTTCCAAGGACACTTCCACAGGCAGAAGCCCTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTCAACGTGCCCTTTGAGGTCATTAAACAGCGCCTTACTGCTCGCTGGATACATCCTGCCAGTGGTCGAGTATACAACATTGAATTCAACCCTCCCAAGACTGTG ggcaaaccctgttcctagagggcatttttggtttctctcattgtttgcagGCTTTCCGAGGACACTTCCGCAGGCAGAGTCACTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTTAATGTCCCATTTGAAGTCATCAAACAGCGTCTCACTGCTCGCTGGATACACCCAGCAAGTGGTCGAGTACACAACATGGAGTTCAACCCTCCCAAGACTGTGgtaaggatgagtatgctcagcagacgttttagcaaaccaactgcactagc Alignment from Spaln_nt2Genome GATTTCCAAGGACACTTCCACAGGCAGAAGCCCTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTCAACGTGCCCTTTGAGGTCATTAAACAGCGCCTTACTGCTCGCTGGATACATCCTGCCAGTGGTCGAGTATACAACATTGAATTCAACCCTCCCAAGACTGTG ggcaaaccctgttcctagagggcatttttggtttctctcattgtttgcagGCTTTCCGAGGACACTTCCGCAGGCAGAGTCACTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTTAATGTCCCATTTGAAGTCATCAAACAGCGTCTCACTGCTCGCTGGATACACCCAGCAAGTGGTCGAGTACACAACATGGAGTTCAACCCTCCCAAGACTGTGgtaaggatgagtatgctcagcagacgttttagcaaaccaactgcactagc Alignment from Pairagon GATTTCCAAGGACACTTCCACAGGCAGAAGCCCTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTCAACGTGCCCTTTGAGGTCATTAAACAGCGCCTTACTGCTCGCTGGATACATCCTGCCAGTGGTCGAGTATACAACATTGAATTCAACCCTCCCAAGACTGTG ggcaaaccctgttcctagagggcatttttggtttctctcattgtttgcagGCTTTCCGAGGACACTTCCGCAGGCAGAGTCACTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTTAATGTCCCATTTGAAGTCATCAAACAGCGTCTCACTGCTCGCTGGATACACCCAGCAAGTGGTCGAGTACACAACATGGAGTTCAACCCTCCCAAGACTGTGgtaaggatgagtatgctcagcagacgttttagcaaaccaactgcactagc Alignment from Exonerate_protein2genome GATTTCCAAGGACACTTCCACAGGCAGAAGCCCTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTCAACGTGCCCTTTGAGGTCATTAAACAGCGCCTTACTGCTCGCTGGATACATCCTGCCAGTGGTCGAGTATACAACATTGAATTCAACCCTCCCAAGACTGTG ggcaaaccctgttcctagagggcatttttggtttctctcattgtttgcagGCTTTCCGAGGACACTTCCGCAGGCAGAGTCACTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTTAATGTCCCATTTGAAGTCATCAAACAGCGTCTCACTGCTCGCTGGATACACCCAGCAAGTGGTCGAGTACACAACATGGAGTTCAACCCTCCCAAGACTGTGgtaaggatgagtatgctcagcagacgttttagcaaaccaactgcactagc Alignment from Exonerate_coding2genome GATTTCCAAGGACACTTCCACAGGCAGAAGCCCTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTCAACGTGCCCTTTGAGGTCATTAAACAGCGCCTTACTGCTCGCTGGATACATCCTGCCAGTGGTCGAGTATACAACATTGAATTCAACCCTCCCAAGACTGTG ggcaaaccctgttcctagagggcatttttggtttctctcattgtttgcagGCTTTCCGAGGACACTTCCGCAGGCAGAGTCACTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTTAATGTCCCATTTGAAGTCATCAAACAGCGTCTCACTGCTCGCTGGATACACCCAGCAAGTGGTCGAGTACACAACATGGAGTTCAACCCTCCCAAGACTGTGgtaaggatgagtatgctcagcagacgttttagcaaaccaactgcactagc Alignment from GeneWise GATTTCCAAGGACACTTCCACAGGCAGAAGCCCTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTCAACGTGCCCTTTGAGGTCATTAAACAGCGCCTTACTGCTCGCTGGATACATCCTGCCAGTGGTCGAGTATACAACATTGAATTCAACCCTCCCAAGACTGTG ggcaaaccctgttcctagagggcatttttggtttctctcattgtttgcagGCTTTCCGAGGACACTTCCGCAGGCAGAGTCACTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTTAATGTCCCATTTGAAGTCATCAAACAGCGTCTCACTGCTCGCTGGATACACCCAGCAAGTGGTCGAGTACACAACATGGAGTTCAACCCTCCCAAGACTGTGgtaaggatgagtatgctcagcagacgttttagcaaaccaactgcactagc #### Aldh18a1_ID7970_13 --> 0 - 1 Original Alignment GTAAACACCAGAGAAGAAGTTGAGGATCTCTGCCGCCTTGACAAAATAATAGATCTGATCATTCCCCGAGGCTCCTCCCAGCTGGTCAGAGACATCCAGAAAGCTGCCAAAGGGATCCCAGTGATGGGCCACAGCGAAGGCATCTGCCACATGTACGTGGATTCCGAAGCCAGCGTGGACAAGGTCACCCGACTCg taaatatcagccagaggttagtgatccagactttattattccttttccagGTAAACACAAGAGAAGAAGTTGAGGATCTCTGCTGTCTAGACAAAATAATAGATCTTATCATTCCCCGAGGATCCTCACAATTAGTAAAAGACATTCAAAAAGCTGCCAAAGGCATCCCAGTGATGGGCCATAGTGAAGGTATCTACTATATGTATGTCGATTCTGAAGCTAGTGTGGATAAGGTCACCCGCCTTggtgagttgactttgaggccctaaatcttcaagagaaggattatcttgaag Alignment from CESAR GTAAACACCAGAGAAGAAGTTGAGGATCTCTGCCGCCTTGACAAAATAATAGATCTGATCATTCCCCGAGGCTCCTCCCAGCTGGTCAGAGACATCCAGAAAGCTGCCAAAGGGATCCCAGTGATGGGCCACAGCGAAGGCATCTGCCACATGTACGTGGATTCCGAAGCCAGCGTGGACAAGGTCACCCGACTCg taaatatcagccagaggttagtgatccagactttattattccttttccagGTAAACACAAGAGAAGAAGTTGAGGATCTCTGCTGTCTAGACAAAATAATAGATCTTATCATTCCCCGAGGATCCTCACAATTAGTAAAAGACATTCAAAAAGCTGCCAAAGGCATCCCAGTGATGGGCCATAGTGAAGGTATCTACTATATGTATGTCGATTCTGAAGCTAGTGTGGATAAGGTCACCCGCCTTggtgagttgactttgaggccctaaatcttcaagagaaggattatcttgaag Alignment from Spaln_aa2Genome GTAAACACCAGAGAAGAAGTTGAGGATCTCTGCCGCCTTGACAAAATAATAGATCTGATCATTCCCCGAGGCTCCTCCCAGCTGGTCAGAGACATCCAGAAAGCTGCCAAAGGGATCCCAGTGATGGGCCACAGCGAAGGCATCTGCCACATGTACGTGGATTCCGAAGCCAGCGTGGACAAGGTCACCCGACTCG taaatatcagccagaggttagtgatccagactttattattccttttccagGTAAACACAAGAGAAGAAGTTGAGGATCTCTGCTGTCTAGACAAAATAATAGATCTTATCATTCCCCGAGGATCCTCACAATTAGTAAAAGACATTCAAAAAGCTGCCAAAGGCATCCCAGTGATGGGCCATAGTGAAGGTATCTACTATATGTATGTCGATTCTGAAGCTAGTGTGGATAAGGTCACCCGCCTTGgtgagttgactttgaggccctaaatcttcaagagaaggattatcttgaag Alignment from Spaln_nt2Genome GTAAACACCAGAGAAGAAGTTGAGGATCTCTGCCGCCTTGACAAAATAATAGATCTGATCATTCCCCGAGGCTCCTCCCAGCTGGTCAGAGACATCCAGAAAGCTGCCAAAGGGATCCCAGTGATGGGCCACAGCGAAGGCATCTGCCACATGTACGTGGATTCCGAAGCCAGCGTGGACAAGGTCACCCGACTCG taaatatcagccagaggttagtgatccagactttattattccttttccagGTAAACACAAGAGAAGAAGTTGAGGATCTCTGCTGTCTAGACAAAATAATAGATCTTATCATTCCCCGAGGATCCTCACAATTAGTAAAAGACATTCAAAAAGCTGCCAAAGGCATCCCAGTGATGGGCCATAGTGAAGGTATCTACTATATGTATGTCGATTCTGAAGCTAGTGTGGATAAGGTCACCCGCCTTGgtgagttgactttgaggccctaaatcttcaagagaaggattatcttgaag Alignment from Pairagon GTAAACACCAGAGAAGAAGTTGAGGATCTCTGCCGCCTTGACAAAATAATAGATCTGATCATTCCCCGAGGCTCCTCCCAGCTGGTCAGAGACATCCAGAAAGCTGCCAAAGGGATCCCAGTGATGGGCCACAGCGAAGGCATCTGCCACATGTACGTGGATTCCGAAGCCAGCGTGGACAAGGTCACCCGACTCG taaatatcagccagaggttagtgatccagactttattattccttttccagGTAAACACAAGAGAAGAAGTTGAGGATCTCTGCTGTCTAGACAAAATAATAGATCTTATCATTCCCCGAGGATCCTCACAATTAGTAAAAGACATTCAAAAAGCTGCCAAAGGCATCCCAGTGATGGGCCATAGTGAAGGTATCTACTATATGTATGTCGATTCTGAAGCTAGTGTGGATAAGGTCACCCGCCTTGgtgagttgactttgaggccctaaatcttcaagagaaggattatcttgaag Alignment from Exonerate_protein2genome GTAAACACCAGAGAAGAAGTTGAGGATCTCTGCCGCCTTGACAAAATAATAGATCTGATCATTCCCCGAGGCTCCTCCCAGCTGGTCAGAGACATCCAGAAAGCTGCCAAAGGGATCCCAGTGATGGGCCACAGCGAAGGCATCTGCCACATGTACGTGGATTCCGAAGCCAGCGTGGACAAGGTCACCCGACTCG taaatatcagccagaggttagtgatccagactttattattccttttccagGTAAACACAAGAGAAGAAGTTGAGGATCTCTGCTGTCTAGACAAAATAATAGATCTTATCATTCCCCGAGGATCCTCACAATTAGTAAAAGACATTCAAAAAGCTGCCAAAGGCATCCCAGTGATGGGCCATAGTGAAGGTATCTACTATATGTATGTCGATTCTGAAGCTAGTGTGGATAAGGTCACCCGCCTTGgtgagttgactttgaggccctaaatcttcaagagaaggattatcttgaag Alignment from Exonerate_coding2genome GTAAACACCAGAGAAGAAGTTGAGGATCTCTGCCGCCTTGACAAAATAATAGATCTGATCATTCCCCGAGGCTCCTCCCAGCTGGTCAGAGACATCCAGAAAGCTGCCAAAGGGATCCCAGTGATGGGCCACAGCGAAGGCATCTGCCACATGTACGTGGATTCCGAAGCCAGCGTGGACAAGGTCACCCGACTCG taaatatcagccagaggttagtgatccagactttattattccttttccagGTAAACACAAGAGAAGAAGTTGAGGATCTCTGCTGTCTAGACAAAATAATAGATCTTATCATTCCCCGAGGATCCTCACAATTAGTAAAAGACATTCAAAAAGCTGCCAAAGGCATCCCAGTGATGGGCCATAGTGAAGGTATCTACTATATGTATGTCGATTCTGAAGCTAGTGTGGATAAGGTCACCCGCCTTGgtgagttgactttgaggccctaaatcttcaagagaaggattatcttgaag Alignment from GeneWise GTAAACACCAGAGAAGAAGTTGAGGATCTCTGCCGCCTTGACAAAATAATAGATCTGATCATTCCCCGAGGCTCCTCCCAGCTGGTCAGAGACATCCAGAAAGCTGCCAAAGGGATCCCAGTGATGGGCCACAGCGAAGGCATCTGCCACATGTACGTGGATTCCGAAGCCAGCGTGGACAAGGTCACCCGACTCG taaatatcagccagaggttagtgatccagactttattattccttttccagGTAAACACAAGAGAAGAAGTTGAGGATCTCTGCTGTCTAGACAAAATAATAGATCTTATCATTCCCCGAGGATCCTCACAATTAGTAAAAGACATTCAAAAAGCTGCCAAAGGCATCCCAGTGATGGGCCATAGTGAAGGTATCTACTATATGTATGTCGATTCTGAAGCTAGTGTGGATAAGGTCACCCGCCTTGgtgagttgactttgaggccctaaatcttcaagagaaggattatcttgaag #### Aldh18a1_ID7974_9 --> 2 - 0 Original Alignment gtCCTACAGTGGAGCAGCAGGGGGAGATGGCTCGATCTGGTGGGAGAATGCTGGCTACCTTAGAGCCTGAACAG caatcagttatccagggaatgcaagtatctagctctcttgtctcccacaggcCCCACAGTTGAGCAGCAGGGGGAGATGGCTCGCTCTGGGGGGAGAATGATAGCCACCTTGGAACCTGAACAGgtaggttgtgtatgtttcagagcaaagcataatctaatcctgggtccatc Alignment from CESAR gtCCTACAGTGGAGCAGCAGGGGGAGATGGCTCGATCTGGTGGGAGAATGCTGGCTACCTTAGAGCCTGAACAG caatcagttatccagggaatgcaagtatctagctctcttgtctcccacaggcCCCACAGTTGAGCAGCAGGGGGAGATGGCTCGCTCTGGGGGGAGAATGATAGCCACCTTGGAACCTGAACAGgtaggttgtgtatgtttcagagcaaagcataatctaatcctgggtccatc Alignment from Spaln_aa2Genome GTCCTACAGTGGAGCAGCAGGGGGAGATGGCTCGATCTGGTGGGAGAATGCTGGCTACCTTAGAGCCTGAACAG caatcagttatccagggaatgcaagtatctagctctcttgtctcccacagGCCCCACAGTTGAGCAGCAGGGGGAGATGGCTCGCTCTGGGGGGAGAATGATAGCCACCTTGGAACCTGAACAGgtaggttgtgtatgtttcagagcaaagcataatctaatcctgggtccatc Alignment from Spaln_nt2Genome GTCCTACAGTGGAGCAGCAGGGGGAGATGGCTCGATCTGGTGGGAGAATGCTGGCTACCTTAGAGCCTGAACAG caatcagttatccagggaatgcaagtatctagctctcttgtctcccacagGCCCCACAGTTGAGCAGCAGGGGGAGATGGCTCGCTCTGGGGGGAGAATGATAGCCACCTTGGAACCTGAACAGgtaggttgtgtatgtttcagagcaaagcataatctaatcctgggtccatc Alignment from Pairagon GTCCTACAGTGGAGCAGCAGGGGGAGATGGCTCGATCTGGTGGGAGAATGCTGGCTACCTTAGAGCCTGAACAG caatcagttatccagggaatgcaagtatctagctctcttgtctcccacagGCCCCACAGTTGAGCAGCAGGGGGAGATGGCTCGCTCTGGGGGGAGAATGATAGCCACCTTGGAACCTGAACAGgtaggttgtgtatgtttcagagcaaagcataatctaatcctgggtccatc Alignment from Exonerate_protein2genome GTCCTACAGTGGAGCAGCAGGGGGAGATGGCTCGATCTGGTGGGAGAATGCTGGCTACCTTAGAGCCTGAACAG caatcagttatccagggaatgcaagtatctagctctcttgtctcccacagGCCCCACAGTTGAGCAGCAGGGGGAGATGGCTCGCTCTGGGGGGAGAATGATAGCCACCTTGGAACCTGAACAGgtaggttgtgtatgtttcagagcaaagcataatctaatcctgggtccatc Alignment from Exonerate_coding2genome GTCCTACAGTGGAGCAGCAGGGGGAGATGGCTCGATCTGGTGGGAGAATGCTGGCTACCTTAGAGCCTGAACAG caatcagttatccagggaatgcaagtatctagctctcttgtctcccacagGCCCCACAGTTGAGCAGCAGGGGGAGATGGCTCGCTCTGGGGGGAGAATGATAGCCACCTTGGAACCTGAACAGgtaggttgtgtatgtttcagagcaaagcataatctaatcctgggtccatc Alignment from GeneWise GTCCTACAGTGGAGCAGCAGGGGGAGATGGCTCGATCTGGTGGGAGAATGCTGGCTACCTTAGAGCCTGAACAG caatcagttatccagggaatgcaagtatctagctctcttgtctcccacagGCCCCACAGTTGAGCAGCAGGGGGAGATGGCTCGCTCTGGGGGGAGAATGATAGCCACCTTGGAACCTGAACAGgtaggttgtgtatgtttcagagcaaagcataatctaatcctgggtccatc #### Aldh1a1_ID4793_6 --> 0 - 0 Original Alignment TGGAATTTTCCAATGCTCATGTTCATTTGGAAGATAGGCCCTGCCCTTAGCTGTGGGAATACCGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACGGCTCTTCACCTGGCATCTTTAATAAAAGAG gagccatcataggatctatcagagattccaggttctctcctatgctccagTGGAATTTTCCCATGCTCATGTTCATTTGGAAAATTGGCCCAGCCCTTAGCTGTGGGAATACTGTGGTTGTGAAGCCAGCAGAGCAAACTCCCCTCACAGCTCTTCACCTGGCATCTCTAATAAAGGAGgtaatagttatatgagtaatttagtgcaagcaaagccagagtccatgctt Alignment from CESAR TGGAATTTTCCAATGCTCATGTTCATTTGGAAGATAGGCCCTGCCCTTAGCTGTGGGAATACCGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACGGCTCTTCACCTGGCATCTTTAATAAAAGAG gagccatcataggatctatcagagattccaggttctctcctatgctccagTGGAATTTTCCCATGCTCATGTTCATTTGGAAAATTGGCCCAGCCCTTAGCTGTGGGAATACTGTGGTTGTGAAGCCAGCAGAGCAAACTCCCCTCACAGCTCTTCACCTGGCATCTCTAATAAAGGAGgtaatagttatatgagtaatttagtgcaagcaaagccagagtccatgctt Alignment from Spaln_aa2Genome TGGAATTTTCCAATGCTCATGTTCATTTGGAAGATAGGCCCTGCCCTTAGCTGTGGGAATACCGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACGGCTCTTCACCTGGCATCTTTAATAAAAGAG gagccatcataggatctatcagagattccaggttctctcctatgctccagTGGAATTTTCCCATGCTCATGTTCATTTGGAAAATTGGCCCAGCCCTTAGCTGTGGGAATACTGTGGTTGTGAAGCCAGCAGAGCAAACTCCCCTCACAGCTCTTCACCTGGCATCTCTAATAAAGGAGgtaatagttatatgagtaatttagtgcaagcaaagccagagtccatgctt Alignment from Spaln_nt2Genome TGGAATTTTCCAATGCTCATGTTCATTTGGAAGATAGGCCCTGCCCTTAGCTGTGGGAATACCGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACGGCTCTTCACCTGGCATCTTTAATAAAAGAG gagccatcataggatctatcagagattccaggttctctcctatgctccagTGGAATTTTCCCATGCTCATGTTCATTTGGAAAATTGGCCCAGCCCTTAGCTGTGGGAATACTGTGGTTGTGAAGCCAGCAGAGCAAACTCCCCTCACAGCTCTTCACCTGGCATCTCTAATAAAGGAGgtaatagttatatgagtaatttagtgcaagcaaagccagagtccatgctt Alignment from Pairagon TGGAATTTTCCAATGCTCATGTTCATTTGGAAGATAGGCCCTGCCCTTAGCTGTGGGAATACCGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACGGCTCTTCACCTGGCATCTTTAATAAAAGAG gagccatcataggatctatcagagattccaggttctctcctatgctccagTGGAATTTTCCCATGCTCATGTTCATTTGGAAAATTGGCCCAGCCCTTAGCTGTGGGAATACTGTGGTTGTGAAGCCAGCAGAGCAAACTCCCCTCACAGCTCTTCACCTGGCATCTCTAATAAAGGAGgtaatagttatatgagtaatttagtgcaagcaaagccagagtccatgctt Alignment from Exonerate_protein2genome TGGAATTTTCCAATGCTCATGTTCATTTGGAAGATAGGCCCTGCCCTTAGCTGTGGGAATACCGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACGGCTCTTCACCTGGCATCTTTAATAAAAGAG gagccatcataggatctatcagagattccaggttctctcctatgctccagTGGAATTTTCCCATGCTCATGTTCATTTGGAAAATTGGCCCAGCCCTTAGCTGTGGGAATACTGTGGTTGTGAAGCCAGCAGAGCAAACTCCCCTCACAGCTCTTCACCTGGCATCTCTAATAAAGGAGgtaatagttatatgagtaatttagtgcaagcaaagccagagtccatgctt Alignment from Exonerate_coding2genome TGGAATTTTCCAATGCTCATGTTCATTTGGAAGATAGGCCCTGCCCTTAGCTGTGGGAATACCGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACGGCTCTTCACCTGGCATCTTTAATAAAAGAG gagccatcataggatctatcagagattccaggttctctcctatgctccagTGGAATTTTCCCATGCTCATGTTCATTTGGAAAATTGGCCCAGCCCTTAGCTGTGGGAATACTGTGGTTGTGAAGCCAGCAGAGCAAACTCCCCTCACAGCTCTTCACCTGGCATCTCTAATAAAGGAGgtaatagttatatgagtaatttagtgcaagcaaagccagagtccatgctt Alignment from GeneWise TGGAATTTTCCAATGCTCATGTTCATTTGGAAGATAGGCCCTGCCCTTAGCTGTGGGAATACCGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACGGCTCTTCACCTGGCATCTTTAATAAAAGAG gagccatcataggatctatcagagattccaggttctctcctatgctccagTGGAATTTTCCCATGCTCATGTTCATTTGGAAAATTGGCCCAGCCCTTAGCTGTGGGAATACTGTGGTTGTGAAGCCAGCAGAGCAAACTCCCCTCACAGCTCTTCACCTGGCATCTCTAATAAAGGAGgtaatagttatatgagtaatttagtgcaagcaaagccagagtccatgctt #### Aldh1a1_ID4798_11 --> 0 - 2 Original Alignment ATATTTGGACCAGTGCAACAAATCATGAAGTTTAAGTCTGTAGATGATGTGATCAAGAGAGCAAACAATACTACCTATGGTTTAGCAGCAGGACTCTTCACTAAAGACCTGGATAAGGCCATCACTGTGTCATCTGCTCTGCAGGCTGGGGTGGTGtg ttcaattgttatcattctcagtgcattcgcctgacctctcctctcttcagATATGTGGACCTGTC---------------CACAAGTCTGTGGAAGATGTAATCAAGAGAGCAAACAATACAACTTATGGTTTAGCAGCAGGACTCTTCACTAAAGACCTTGATAAAGCTATCACTGTGGCCTCTGCTTTGCAGGCTGGGGTAGTTtggtgagtgccactgctgctgttcaatgtgactttactatattggtagatgg Alignment from CESAR ATATTTGGACCAGTGCAACAAATCATGAAGTTTAAGTCTGTAGATGATGTGATCAAGAGAGCAAACAATACTACCTATGGTTTAGCAGCAGGACTCTTCACTAAAGACCTGGATAAGGCCATCACTGTGTCATCTGCTCTGCAGGCTGGGGTGGTGtg ttcaattgttatcattctcagtgcattcgcctgacctctcctctcttcagATATGTGGACCTGTCCAC---------------AAGTCTGTGGAAGATGTAATCAAGAGAGCAAACAATACAACTTATGGTTTAGCAGCAGGACTCTTCACTAAAGACCTTGATAAAGCTATCACTGTGGCCTCTGCTTTGCAGGCTGGGGTAGTTtggtgagtgccactgctgctgttcaatgtgactttactatattggtagatgg Alignment from Spaln_aa2Genome ATATTTGGACCAGTGCAACAAATCATGAAGTTTAAGTCTGTAGATGATGTGATCAAGAGAGCAAACAATACTACCTATGGTTTAGCAGCAGGACTCTTCACTAAAGACCTGGATAAGGCCATCACTGTGTCATCTGCTCTGCAGGCTGGGGTGGTGTG ttcaattgttatcattctcagtgcattcgcctgacctctcctctcttcagATATGTGGACCTGTCCAC---------------AAGTCTGTGGAAGATGTAATCAAGAGAGCAAACAATACAACTTATGGTTTAGCAGCAGGACTCTTCACTAAAGACCTTGATAAAGCTATCACTGTGGCCTCTGCTTTGCAGGCTGGGGTAGTTTGgtgagtgccactgctgctgttcaatgtgactttactatattggtagatgg Alignment from Spaln_nt2Genome ATATTTGGACCAGTGCAACAAATCATGAAGTTTAAGTCTGTAGATGATGTGATCAAGAGAGCAAACAATACTACCTATGGTTTAGCAGCAGGACTCTTCACTAAAGACCTGGATAAGGCCATCACTGTGTCATCTGCTCTGCAGGCTGGGGTGGTGTG ttcaattgttatcattctcagtgcattcgcctgacctctcctctcttcagATATGTGGACCTGTCCA---------------CAAGTCTGTGGAAGATGTAATCAAGAGAGCAAACAATACAACTTATGGTTTAGCAGCAGGACTCTTCACTAAAGACCTTGATAAAGCTATCACTGTGGCCTCTGCTTTGCAGGCTGGGGTAGTTTGgtgagtgccactgctgctgttcaatgtgactttactatattggtagatgg Alignment from Pairagon ATATTTGGACCAGTGCAACAAATCATGAAGTTTAAGTCTGTAGATGATGTGATCAAGAGAGCAAACAATACTACCTATGGTTTAGCAGCAGGACTCTTCACTAAAGACCTGGATAAGGCCATCACTGTGTCATCTGCTCTGCAGGCTGGGGTGGTGTG ttcaattgttatcattctcagtgcattcgcctgacctctcctctcttcagATATGTGGACCTGTCCA---------------CAAGTCTGTGGAAGATGTAATCAAGAGAGCAAACAATACAACTTATGGTTTAGCAGCAGGACTCTTCACTAAAGACCTTGATAAAGCTATCACTGTGGCCTCTGCTTTGCAGGCTGGGGTAGTTTGgtgagtgccactgctgctgttcaatgtgactttactatattggtagatgg Alignment from Exonerate_protein2genome ATATTTGGACCAGTGCAACAAATCATGAAGTTTAAGTCTGTAGATGATGTGATCAAGAGAGCAAACAATACTACCTATGGTTTAGCAGCAGGACTCTTCACTAAAGACCTGGATAAGGCCATCACTGTGTCATCTGCTCTGCAGGCTGGGGTGGTGTG ttcaattgttatcattctcagtgcattcgcctgacctctcctctcttcagATATGTGGACCTGTCCAC---------------AAGTCTGTGGAAGATGTAATCAAGAGAGCAAACAATACAACTTATGGTTTAGCAGCAGGACTCTTCACTAAAGACCTTGATAAAGCTATCACTGTGGCCTCTGCTTTGCAGGCTGGGGTAGTTTGgtgagtgccactgctgctgttcaatgtgactttactatattggtagatgg Alignment from Exonerate_coding2genome ATATTTGGACCAGTGCAACAAATCATGAAGTTTAAGTCTGTAGATGATGTGATCAAGAGAGCAAACAATACTACCTATGGTTTAGCAGCAGGACTCTTCACTAAAGACCTGGATAAGGCCATCACTGTGTCATCTGCTCTGCAGGCTGGGGTGGTGTG ttcaattgttatcattctcagtgcattcgcctgacctctcctctcttcagATATGTGGACCTGTCCAC---------------AAGTCTGTGGAAGATGTAATCAAGAGAGCAAACAATACAACTTATGGTTTAGCAGCAGGACTCTTCACTAAAGACCTTGATAAAGCTATCACTGTGGCCTCTGCTTTGCAGGCTGGGGTAGTTTGgtgagtgccactgctgctgttcaatgtgactttactatattggtagatgg Alignment from GeneWise ATATTTGGACCAGTGCAACAAATCATGAAGTTTAAGTCTGTAGATGATGTGATCAAGAGAGCAAACAATACTACCTATGGTTTAGCAGCAGGACTCTTCACTAAAGACCTGGATAAGGCCATCACTGTGTCATCTGCTCTGCAGGCTGGGGTGGTGTG ttcaattgttatcattctcagtgcattcgcctgacctctcctctcttcagATATGTGGACCTGTCCAC---------------AAGTCTGTGGAAGATGTAATCAAGAGAGCAAACAATACAACTTATGGTTTAGCAGCAGGACTCTTCACTAAAGACCTTGATAAAGCTATCACTGTGGCCTCTGCTTTGCAGGCTGGGGTAGTTTGgtgagtgccactgctgctgttcaatgtgactttactatattggtagatgg #### Aldh3b1_ID201_6 --> 2 - 1 Original Alignment ggAATGCTTATGTAGGCAAGATCGTCATGGCTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGATAGTGGCCAACCGTGTGGCCTGGTTCCGCTACTTTAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTACAGAATGCCATCACACGTTTCTATGGAGACAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGCGACTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTAC---ATTg tacataggtgactttgatggtaacctgactcctggttccgtttttgacagggAATGCTTATGTAGGAAAGATCGTCATGGCTGTGGATGCCACACACCTAACACCCATCACCCTGGAGCTGGGG---GAGAACCCCTGTTATGTAGATGATAACTGTGACCCCCAG---GGGGCTAACCGTGTGGCCTGGTTCCACTACTTTAATGCGGGGCAGACCTGTTTGTCCCCTGATTATATACTGTGTAGCCAGGAGATGCCAAAGCAGCTTGTACATGCCTTGCAAAATGCCATCACATGTTTCTATGGAGACAACCCACAGACCCCCCCTAATCTGGACAGGAGAATAAACCAGAAGCATTATAAACGACTCCAGGGCTTACTTGGCTGTGGCTATCTTGGCATTAGTAGCCAGAGTGATGAAGGAGGGTGTTATGCTATAggtaggtttccccatgaacaattcacatggagcccatgacatgctggggtt Alignment from CESAR ggAATGCTTATGTAGGCAAGATCGTCATGGCTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGATAGTGGCCAACCGTGTGGCCTGGTTCCGCTACTTTAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTACAGAATGCCATCACACGTTTCTATGGAGACAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGCGACTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTAC---ATTg tacataggtgactttgatggtaacctgactcctggttccgtttttgacagggAATGCTTATGTAGGAAAGATCGTCATGGCTGTGGATGCCACACACCTAACACCCATCACCCTGGAGCTGGGG---GAGAACCCCTGTTATGTAGATGATAACTGTGACCCCCAG---GGGGCTAACCGTGTGGCCTGGTTCCACTACTTTAATGCGGGGCAGACCTGTTTGTCCCCTGATTATATACTGTGTAGCCAGGAGATGCCAAAGCAGCTTGTACATGCCTTGCAAAATGCCATCACATGTTTCTATGGAGACAACCCACAGACCCCCCCTAATCTGGACAGGAGAATAAACCAGAAGCATTATAAACGACTCCAGGGCTTACTTGGCTGTGGCTATCTTGGCATTAGTAGCCAGAGTGATGAAGGAGGGTGTTATGCTATAggtaggtttccccatgaacaattcacatggagcccatgacatgctggggtt Alignment from Spaln_aa2Genome GGAATGCTTATGTAGGCAAGATCGTCATGGCTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGATAGTGGCCAACCGTGTGGCCTGGTTCCGCTACTTTAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTACAGAATGCCATCACACGTTTCTATGGAGACAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGCGACTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTAC---ATTG tacataggtgactttgatggtaacctgactcctggttccgtttttgacagGGAATGCTTATGTAGGAAAGATCGTCATGGCTGTGGATGCCACACACCTAACACCCATCACCCTGGAGCTG---GGGGAGAACCCCTGTTATGTAGATGATAACTGTGACCCCCAG---GGGGCTAACCGTGTGGCCTGGTTCCACTACTTTAATGCGGGGCAGACCTGTTTGTCCCCTGATTATATACTGTGTAGCCAGGAGATGCCAAAGCAGCTTGTACATGCCTTGCAAAATGCCATCACATGTTTCTATGGAGACAACCCACAGACCCCCCCTAATCTGGACAGGAGAATAAACCAGAAGCATTATAAACGACTCCAGGGCTTACTTGGCTGTGGCTATCTTGGCATTAGTAGCCAGAGTGATGAAGGAGGGTGTTATGCTATAGgtaggtttccccatgaacaattcacatggagcccatgacatgctggggtt Alignment from Spaln_nt2Genome GGAATGCTTATGTAGGCAAGATCGTCATGGCTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGATAGTGGCCAACCGTGTGGCCTGGTTCCGCTACTTTAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTACAGAATGCCATCACACGTTTCTATGGAGACAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGCGACTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTAC---ATTG tacataggtgactttgatggtaacctgactcctggttccgtttttgacagGGAATGCTTATGTAGGAAAGATCGTCATGGCTGTGGATGCCACACACCTAACACCCATCACCCTGGAGCTGGGGG---AGAACCCCTGTTATGTAGATGATAACTGTGACCCCCAG---GGGGCTAACCGTGTGGCCTGGTTCCACTACTTTAATGCGGGGCAGACCTGTTTGTCCCCTGATTATATACTGTGTAGCCAGGAGATGCCAAAGCAGCTTGTACATGCCTTGCAAAATGCCATCACATGTTTCTATGGAGACAACCCACAGACCCCCCCTAATCTGGACAGGAGAATAAACCAGAAGCATTATAAACGACTCCAGGGCTTACTTGGCTGTGGCTATCTTGGCATTAGTAGCCAGAGTGATGAAGGAGGGTGTTATGCTATAGgtaggtttccccatgaacaattcacatggagcccatgacatgctggggtt Alignment from Pairagon GGAATGCTTATGTAGGCAAGATCGTCATGGCTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGATAGTGGCCAACCGTGTGGCCTGGTTCCGCTACTTTAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTACAGAATGCCATCACACGTTTCTATGGAGACAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGCGACTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTA---CATTG tacataggtgactttgatggtaacctgactcctggttccgtttttgacagGGAATGCTTATGTAGGAAAGATCGTCATGGCTGTGGATGCCACACACCTAACACCCATCACCCTGGAGCTGGGGG---AGAACCCCTGTTATGTAGATGATAACTGTGACCCCCAG---GGGGCTAACCGTGTGGCCTGGTTCCACTACTTTAATGCGGGGCAGACCTGTTTGTCCCCTGATTATATACTGTGTAGCCAGGAGATGCCAAAGCAGCTTGTACATGCCTTGCAAAATGCCATCACATGTTTCTATGGAGACAACCCACAGACCCCCCCTAATCTGGACAGGAGAATAAACCAGAAGCATTATAAACGACTCCAGGGCTTACTTGGCTGTGGCTATCTTGGCATTAGTAGCCAGAGTGATGAAGGAGGGTGTTATGCTATAGgtaggtttccccatgaacaattcacatggagcccatgacatgctggggtt Alignment from Exonerate_protein2genome GGAATGCTTATGTAGGCAAGATCGTCATGGCTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGATAGTGGCCAACCGTGTGGCCTGGTTCCGCTACTTTAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTACAGAATGCCATCACACGTTTCTATGGAGACAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGCGACTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTAC---ATTG tacataggtgactttgatggtaacctgactcctggttccgtttttgacagGGAATGCTTATGTAGGAAAGATCGTCATGGCTGTGGATGCCACACACCTAACACCCATCACCCTGGAGCTG---GGGGAGAACCCCTGTTATGTAGATGATAACTGTGACCCCCAG---GGGGCTAACCGTGTGGCCTGGTTCCACTACTTTAATGCGGGGCAGACCTGTTTGTCCCCTGATTATATACTGTGTAGCCAGGAGATGCCAAAGCAGCTTGTACATGCCTTGCAAAATGCCATCACATGTTTCTATGGAGACAACCCACAGACCCCCCCTAATCTGGACAGGAGAATAAACCAGAAGCATTATAAACGACTCCAGGGCTTACTTGGCTGTGGCTATCTTGGCATTAGTAGCCAGAGTGATGAAGGAGGGTGTTATGCTATAGgtaggtttccccatgaacaattcacatggagcccatgacatgctggggtt Alignment from Exonerate_coding2genome GGAATGCTTATGTAGGCAAGATCGTCATGGCTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGATAGTGGCCAACCGTGTGGCCTGGTTCCGCTACTTTAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTACAGAATGCCATCACACGTTTCTATGGAGACAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGCGACTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTAC---ATTG tacataggtgactttgatggtaacctgactcctggttccgtttttgacagGGAATGCTTATGTAGGAAAGATCGTCATGGCTGTGGATGCCACACACCTAACACCCATCACCCTGGAGCTG---GGGGAGAACCCCTGTTATGTAGATGATAACTGTGACCCCCAG---GGGGCTAACCGTGTGGCCTGGTTCCACTACTTTAATGCGGGGCAGACCTGTTTGTCCCCTGATTATATACTGTGTAGCCAGGAGATGCCAAAGCAGCTTGTACATGCCTTGCAAAATGCCATCACATGTTTCTATGGAGACAACCCACAGACCCCCCCTAATCTGGACAGGAGAATAAACCAGAAGCATTATAAACGACTCCAGGGCTTACTTGGCTGTGGCTATCTTGGCATTAGTAGCCAGAGTGATGAAGGAGGGTGTTATGCTATAGgtaggtttccccatgaacaattcacatggagcccatgacatgctggggtt Alignment from GeneWise GGAATGCTTATGTAGGCAAGATCGTCATGGCTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGATAGTGGCCAACCGTGTGGCCTGGTTCCGCTACTTTAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTACAGAATGCCATCACACGTTTCTATGGAGACAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGCGACTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTGCC- tacataggtgactttgatggtaacctgactcctggttccgtttttgacagGGAATGCTTATGTAGGAAAGATCGTCATGGCTGTGGATGCCACACACCTAACACCCATCACCCTGGAGCTGGGG---GAGAACCCCTGTTATGTAGATGATAACTGTGACCCCCAG---GGGGCTAACCGTGTGGCCTGGTTCCACTACTTTAATGCGGGGCAGACCTGTTTGTCCCCTGATTATATACTGTGTAGCCAGGAGATGCCAAAGCAGCTTGTACATGCCTTGCAAAATGCCATCACATGTTTCTATGGAGACAACCCACAGACCCCCCCTAATCTGGACAGGAGAATAAACCAGAAGCATTATAAACGACTCCAGGGCTTACTTGGCTGTGGCTATCTTGGCATTAGTAGCCAGAGTGATGAAGGAGGGTGTTATGCTATAGgtaggtttccccatgaacaattcacatggagcccatgacatgctggggtt #### Aldh3b1_ID203_4 --> 2 - 0 Original Alignment ggAATTGTGTGGTGCTCAAGCCCTCAGAGATCAGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAG gcataatcttttgttacagccttttattgacacattaactgtgctcctaggtAATTGTGTTGTGCTTAAGCCAGCAGAGATTGGCAAAGCCACTGAGAAGATACTGGCTGCAGTCCTGCCCCGCTATCTAGACAAGgtaaggtgaatcaatgcagtgtcgtagcttcagccgttcatttgctcgta Alignment from CESAR ggAATTGTGTGGTGCTCAAGCCCTCAGAGATCAGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAG gcataatcttttgttacagccttttattgacacattaactgtgctcctaggtAATTGTGTTGTGCTTAAGCCAGCAGAGATTGGCAAAGCCACTGAGAAGATACTGGCTGCAGTCCTGCCCCGCTATCTAGACAAGgtaaggtgaatcaatgcagtgtcgtagcttcagccgttcatttgctcgta Alignment from Spaln_aa2Genome GGAATTGTGTGGTGCTCAAGCCCTCAGAGATCAGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAG gcataatcttttgttacagccttttattgacacattaactgtgctcctagGTAATTGTGTTGTGCTTAAGCCAGCAGAGATTGGCAAAGCCACTGAGAAGATACTGGCTGCAGTCCTGCCCCGCTATCTAGACAAGgtaaggtgaatcaatgcagtgtcgtagcttcagccgttcatttgctcgta Alignment from Spaln_nt2Genome GGAATTGTGTGGTGCTCAAGCCCTCAGAGATCAGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAG gcataatcttttgttacagccttttattgacacattaactgtgctcctagGTAATTGTGTTGTGCTTAAGCCAGCAGAGATTGGCAAAGCCACTGAGAAGATACTGGCTGCAGTCCTGCCCCGCTATCTAGACAAGgtaaggtgaatcaatgcagtgtcgtagcttcagccgttcatttgctcgta Alignment from Pairagon GGAATTGTGTGGTGCTCAAGCCCTCAGAGATCAGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAG gcataatcttttgttacagccttttattgacacattaactgtgctcctagGTAATTGTGTTGTGCTTAAGCCAGCAGAGATTGGCAAAGCCACTGAGAAGATACTGGCTGCAGTCCTGCCCCGCTATCTAGACAAGgtaaggtgaatcaatgcagtgtcgtagcttcagccgttcatttgctcgta Alignment from Exonerate_protein2genome GGAATTGTGTGGTGCTCAAGCCCTCAGAGATCAGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAG gcataatcttttgttacagccttttattgacacattaactgtgctcctagGTAATTGTGTTGTGCTTAAGCCAGCAGAGATTGGCAAAGCCACTGAGAAGATACTGGCTGCAGTCCTGCCCCGCTATCTAGACAAGgtaaggtgaatcaatgcagtgtcgtagcttcagccgttcatttgctcgta Alignment from Exonerate_coding2genome GGAATTGTGTGGTGCTCAAGCCCTCAGAGATCAGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAG gcataatcttttgttacagccttttattgacacattaactgtgctcctagGTAATTGTGTTGTGCTTAAGCCAGCAGAGATTGGCAAAGCCACTGAGAAGATACTGGCTGCAGTCCTGCCCCGCTATCTAGACAAGgtaaggtgaatcaatgcagtgtcgtagcttcagccgttcatttgctcgta Alignment from GeneWise GGAATTGTGTGGTGCTCAAGCCCTCAGAGATCAGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAG gcataatcttttgttacagccttttattgacacattaactgtgctcctagGTAATTGTGTTGTGCTTAAGCCAGCAGAGATTGGCAAAGCCACTGAGAAGATACTGGCTGCAGTCCTGCCCCGCTATCTAGACAAGgtaaggtgaatcaatgcagtgtcgtagcttcagccgttcatttgctcgta #### Aldh3b1_ID204_3 --> 0 - 1 Original Alignment GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAg atgtttagagcccccctcaggaccacatctttctgtctgtttcccctcagGCTACAATGTTGGATGCCACATTCATCAGGAAGGAGCCCTTTGGGCTGGTGCTAATCATTGTGCCCTGGAATTACCCCATCAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCTGCAggtaaggagtttttaaccttctggctgaggcttctgcatttgtcatgtagt Alignment from CESAR GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAg atgtttagagcccccctcaggaccacatctttctgtctgtttcccctcagGCTACAATGTTGGATGCCACATTCATCAGGAAGGAGCCCTTTGGGCTGGTGCTAATCATTGTGCCCTGGAATTACCCCATCAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCTGCAggtaaggagtttttaaccttctggctgaggcttctgcatttgtcatgtagt Alignment from Spaln_aa2Genome GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG atgtttagagcccccctcaggaccacatctttctgtctgtttcccctcagGCTACAATGTTGGATGCCACATTCATCAGGAAGGAGCCCTTTGGGCTGGTGCTAATCATTGTGCCCTGGAATTACCCCATCAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCTGCAGgtaaggagtttttaaccttctggctgaggcttctgcatttgtcatgtagt Alignment from Spaln_nt2Genome GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG atgtttagagcccccctcaggaccacatctttctgtctgtttcccctcagGCTACAATGTTGGATGCCACATTCATCAGGAAGGAGCCCTTTGGGCTGGTGCTAATCATTGTGCCCTGGAATTACCCCATCAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCTGCAGgtaaggagtttttaaccttctggctgaggcttctgcatttgtcatgtagt Alignment from Pairagon GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG atgtttagagcccccctcaggaccacatctttctgtctgtttcccctcagGCTACAATGTTGGATGCCACATTCATCAGGAAGGAGCCCTTTGGGCTGGTGCTAATCATTGTGCCCTGGAATTACCCCATCAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCTGCAGgtaaggagtttttaaccttctggctgaggcttctgcatttgtcatgtagt Alignment from Exonerate_protein2genome GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG atgtttagagcccccctcaggaccacatctttctgtctgtttcccctcagGCTACAATGTTGGATGCCACATTCATCAGGAAGGAGCCCTTTGGGCTGGTGCTAATCATTGTGCCCTGGAATTACCCCATCAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCTGCAGgtaaggagtttttaaccttctggctgaggcttctgcatttgtcatgtagt Alignment from Exonerate_coding2genome GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG atgtttagagcccccctcaggaccacatctttctgtctgtttcccctcagGCTACAATGTTGGATGCCACATTCATCAGGAAGGAGCCCTTTGGGCTGGTGCTAATCATTGTGCCCTGGAATTACCCCATCAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCTGCAGgtaaggagtttttaaccttctggctgaggcttctgcatttgtcatgtagt Alignment from GeneWise GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG atgtttagagcccccctcaggaccacatctttctgtctgtttcccctcagGCTACAATGTTGGATGCCACATTCATCAGGAAGGAGCCCTTTGGGCTGGTGCTAATCATTGTGCCCTGGAATTACCCCATCAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCTGCAGgtaaggagtttttaaccttctggctgaggcttctgcatttgtcatgtagt #### Aldh3b2_ID241_7 --> 2 - 1 Original Alignment gaAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTg agactaaacggcttactaggtgaacaggctccacgtccttgtgatttcaggaAGCCCTCGAGTAGGCAAGATGGTGATGACAGCTACGGCCAATCACCTGACTCCCACCTCCCTGCAACTAGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACCGAGTGGCCTGGTTCCACTATTTCAATGCTGGGCAAACCTGTGTGGCACCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTT------TTGCAAAATTCTATCACTCGTTTC------TACAATCCACAGACTCCACCTAACCTAGGAAGGATGATTAATCAGAAGCATTTCAAGAGGCTTCAAGGATTGCTGGGGTGTGGCCGTGTGGCTATTGGTGTGCAGAGTGATGAGGGAGGGTGTTGTATTggtacctccttgctatgtctgccggcccatcagagggcccatgccatccgt Alignment from CESAR gaAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTg agactaaacggcttactaggtgaacaggctccacgtccttgtgatttcaggaAGCCCTCGAGTAGGCAAGATGGTGATGACAGCTACGGCCAATCACCTGACTCCCACCTCCCTGCAACTAGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACCGAGTGGCCTGGTTCCACTATTTCAATGCTGGGCAAACCTGTGTGGCACCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTT------TTGCAAAATTCTATCACTCGTTTCTAC------AATCCACAGACTCCACCTAACCTAGGAAGGATGATTAATCAGAAGCATTTCAAGAGGCTTCAAGGATTGCTGGGGTGTGGCCGTGTGGCTATTGGTGTGCAGAGTGATGAGGGAGGGTGTTGTATTggtacctccttgctatgtctgccggcccatcagagggcccatgccatccgt Alignment from Spaln_aa2Genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG agactaaacggcttactaggtgaacaggctccacgtccttgtgatttcagGAAGCCCTCGAGTAGGCAAGATGGTGATGACAGCTACGGCCAATCACCTGACTCCCACCTCCCTGCAACTAGGAGGCAAGAATCCCTGCTATGAT---GATAACTGTGACCCACAGACAGTGACCAACCGAGTGGCCTGGTTCCACTATTTCAATGCTGGGCAAACCTGTGTGGCACCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTT------TTGCAAAATTCTATCACTCGTTTCTAC------AATCCACAGACTCCACCTAACCTAGGAAGGATGATTAATCAGAAGCATTTCAAGAGGCTTCAAGGATTGCTGGGGTGTGGCCGTGTGGCTATTGGTGTGCAGAGTGATGAGGGAGGGTGTTGTATTGgtacctccttgctatgtctgccggcccatcagagggcccatgccatccgt Alignment from Spaln_nt2Genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG agactaaacggcttactaggtgaacaggctccacgtccttgtgatttcagGAAGCCCTCGAGTAGGCAAGATGGTGATGACAGCTACGGCCAATCACCTGACTCCCACCTCCCTGCAACTAGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACCGAGTGGCCTGGTTCCACTATTTCAATGCTGGGCAAACCTGTGTGGCACCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGT------TTTGCAAAATTCTATCACTCGTTTCT------ACAATCCACAGACTCCACCTAACCTAGGAAGGATGATTAATCAGAAGCATTTCAAGAGGCTTCAAGGATTGCTGGGGTGTGGCCGTGTGGCTATTGGTGTGCAGAGTGATGAGGGAGGGTGTTGTATTGgtacctccttgctatgtctgccggcccatcagagggcccatgccatccgt Alignment from Pairagon GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG agactaaacggcttactaggtgaacaggctccacgtccttgtgatttcagGAAGCCCTCGAGTAGGCAAGATGGTGATGACAGCTACGGCCAATCACCTGACTCCCACCTCCCTGCAACTAGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACCGAGTGGCCTGGTTCCACTATTTCAATGCTGGGCAAACCTGTGTGGCACCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGT------TTTGCAAAATTCTATCACTCGTTTCT------ACAATCCACAGACTCCACCTAACCTAGGAAGGATGATTAATCAGAAGCATTTCAAGAGGCTTCAAGGATTGCTGGGGTGTGGCCGTGTGGCTATTGGTGTGCAGAGTGATGAGGGAGGGTGTTGTATTGgtacctccttgctatgtctgccggcccatcagagggcccatgccatccgt Alignment from Exonerate_protein2genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG agactaaacggcttactaggtgaacaggctccacgtccttgtgatttcagGAAGCCCTCGAGTAGGCAAGATGGTGATGACAGCTACGGCCAATCACCTGACTCCCACCTCCCTGCAACTAGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACCGAGTGGCCTGGTTCCACTATTTCAATGCTGGGCAAACCTGTGTGGCACCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTT------TTGCAAAATTCTATCACTCGTTTCTAC------AATCCACAGACTCCACCTAACCTAGGAAGGATGATTAATCAGAAGCATTTCAAGAGGCTTCAAGGATTGCTGGGGTGTGGCCGTGTGGCTATTGGTGTGCAGAGTGATGAGGGAGGGTGTTGTATTGgtacctccttgctatgtctgccggcccatcagagggcccatgccatccgt Alignment from Exonerate_coding2genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG agactaaacggcttactaggtgaacaggctccacgtccttgtgatttcagGAAGCCCTCGAGTAGGCAAGATGGTGATGACAGCTACGGCCAATCACCTGACTCCCACCTCCCTGCAACTAGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACCGAGTGGCCTGGTTCCACTATTTCAATGCTGGGCAAACCTGTGTGGCACCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTT------TTGCAAAATTCTATCACTCGTTTCTAC------AATCCACAGACTCCACCTAACCTAGGAAGGATGATTAATCAGAAGCATTTCAAGAGGCTTCAAGGATTGCTGGGGTGTGGCCGTGTGGCTATTGGTGTGCAGAGTGATGAGGGAGGGTGTTGTATTGgtacctccttgctatgtctgccggcccatcagagggcccatgccatccgt Alignment from GeneWise GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG agactaaacggcttactaggtgaacaggctccacgtccttgtgatttcagGAAGCCCTCGAGTAGGCAAGATGGTGATGACAGCTACGGCCAATCACCTGACTCCCACCTCCCTGCAACTAGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACCGAGTGGCCTGGTTCCACTATTTCAATGCTGGGCAAACCTGTGTGGCACCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTT------TTGCAAAATTCTATCACTCGTTTCTAC------AATCCACAGACTCCACCTAACCTAGGAAGGATGATTAATCAGAAGCATTTCAAGAGGCTTCAAGGATTGCTGGGGTGTGGCCGTGTGGCTATTGGTGTGCAGAGTGATGAGGGAGGGTGTTGTATTGgtacctccttgctatgtctgccggcccatcagagggcccatgccatccgt #### Aldh3b2_ID243_9 --> 0 - 1 Original Alignment GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTg cagaacacaccagaatgcctgtatcacctctgagagccactcttttctagGTGGTGAATCAGATGCTGGAGCGTACAAGCAGTGGGGGTTTTGGAGGCAATGATGGCTTCCTCTACCTGACACTGCCTGCATTGCCTTTGGGAGGGGTTggtgagctcttacctcctattgccattggagagagttatgtgccaccttgg Alignment from CESAR GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTg cagaacacaccagaatgcctgtatcacctctgagagccactcttttctagGTGGTGAATCAGATGCTGGAGCGTACAAGCAGTGGGGGTTTTGGAGGCAATGATGGCTTCCTCTACCTGACACTGCCTGCATTGCCTTTGGGAGGGGTTggtgagctcttacctcctattgccattggagagagttatgtgccaccttgg Alignment from Spaln_aa2Genome GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG cagaacacaccagaatgcctgtatcacctctgagagccactcttttctagGTGGTGAATCAGATGCTGGAGCGTACAAGCAGTGGGGGTTTTGGAGGCAATGATGGCTTCCTCTACCTGACACTGCCTGCATTGCCTTTGGGAGGGGTTGgtgagctcttacctcctattgccattggagagagttatgtgccaccttgg Alignment from Spaln_nt2Genome GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG cagaacacaccagaatgcctgtatcacctctgagagccactcttttctagGTGGTGAATCAGATGCTGGAGCGTACAAGCAGTGGGGGTTTTGGAGGCAATGATGGCTTCCTCTACCTGACACTGCCTGCATTGCCTTTGGGAGGGGTTGgtgagctcttacctcctattgccattggagagagttatgtgccaccttgg Alignment from Pairagon GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG cagaacacaccagaatgcctgtatcacctctgagagccactcttttctagGTGGTGAATCAGATGCTGGAGCGTACAAGCAGTGGGGGTTTTGGAGGCAATGATGGCTTCCTCTACCTGACACTGCCTGCATTGCCTTTGGGAGGGGTTGgtgagctcttacctcctattgccattggagagagttatgtgccaccttgg Alignment from Exonerate_protein2genome GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG cagaacacaccagaatgcctgtatcacctctgagagccactcttttctagGTGGTGAATCAGATGCTGGAGCGTACAAGCAGTGGGGGTTTTGGAGGCAATGATGGCTTCCTCTACCTGACACTGCCTGCATTGCCTTTGGGAGGGGTTGgtgagctcttacctcctattgccattggagagagttatgtgccaccttgg Alignment from Exonerate_coding2genome GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG cagaacacaccagaatgcctgtatcacctctgagagccactcttttctagGTGGTGAATCAGATGCTGGAGCGTACAAGCAGTGGGGGTTTTGGAGGCAATGATGGCTTCCTCTACCTGACACTGCCTGCATTGCCTTTGGGAGGGGTTGgtgagctcttacctcctattgccattggagagagttatgtgccaccttgg Alignment from GeneWise GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG cagaacacaccagaatgcctgtatcacctctgagagccactcttttctagGTGGTGAATCAGATGCTGGAGCGTACAAGCAGTGGGGGTTTTGGAGGCAATGATGGCTTCCTCTACCTGACACTGCCTGCATTGCCTTTGGGAGGGGTTGgtgagctcttacctcctattgccattggagagagttatgtgccaccttgg #### Ankrd13d_ID461_12 --> 2 - 1 Original Alignment agATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAg atgcaatattacgcgttactgggtacctaaatgtttgcaatatcctccagaaATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGCGGCTGCGATGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTCTGGCAATTTCTGCTTCAggtgagtctatagccatgtcagatattcccatctggctttctgttaagcct Alignment from CESAR agATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAg atgcaatattacgcgttactgggtacctaaatgtttgcaatatcctccagaaATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGCGGCTGCGATGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTCTGGCAATTTCTGCTTCAggtgagtctatagccatgtcagatattcccatctggctttctgttaagcct Alignment from Spaln_aa2Genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG atgcaatattacgcgttactgggtacctaaatgtttgcaatatcctccagAAATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGCGGCTGCGATGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTCTGGCAATTTCTGCTTCAGgtgagtctatagccatgtcagatattcccatctggctttctgttaagcct Alignment from Spaln_nt2Genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG atgcaatattacgcgttactgggtacctaaatgtttgcaatatcctccagAAATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGCGGCTGCGATGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTCTGGCAATTTCTGCTTCAGgtgagtctatagccatgtcagatattcccatctggctttctgttaagcct Alignment from Pairagon AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG atgcaatattacgcgttactgggtacctaaatgtttgcaatatcctccagAAATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGCGGCTGCGATGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTCTGGCAATTTCTGCTTCAGgtgagtctatagccatgtcagatattcccatctggctttctgttaagcct Alignment from Exonerate_protein2genome atgcaatattacgcgttactgggtacctaaatgtttgcaatatcctccagaaattcccctctttcatgtgcacaatgcccgcaccacctttagtaacctttgcggctgcgatgaacctgtgagctcagtgtgtgtccccaactccagtctggcaatttctgcttcaggtgagtctatagccatgtcagatattcccatctggctttctgttaagcct Alignment from Exonerate_coding2genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG atgcaatattacgcgttactgggtacctaaatgtttgcaatatcctccagAAATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGCGGCTGCGATGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTCTGGCAATTTCTGCTTCAGgtgagtctatagccatgtcagatattcccatctggctttctgttaagcct Alignment from GeneWise AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG atgcaatattacgcgttactgggtacctaaatgtttgcaatatcctccagAAATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGCGGCTGCGATGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTCTGGCAATTTCTGCTTCAGgtgagtctatagccatgtcagatattcccatctggctttctgttaagcct #### Ankrd13d_ID462_11 --> 1 - 1 Original Alignment gTTCAAGGCAACACTGTGGCTAAGTGAGGAGCACCCACTGTCCTTGGGTGACCAGGTGACACCCATCATTGACCTGATGGCCATCAGCAACGCTCATTTTGCCAAGCTACGGGATTTCATCACTCTGCGTCTCCCACCAGGCTTCCCTGTCAAGATTg ttgagttgagtatggatatgtgtgttccaatgttatttattatttcacaggTTCAAAGCAACACTGTGGCTAAGTGAGGAGCACCCCTTAGCCCTGGGCGAACAGGTCACTCCCATCATCAGCCTAATGGCCATCAGCAAC------------------CAAGATTTCATAAGTCTTCGTCTCCCCCCTGGCTTTCCTGTCAAAATTggtaggtgggcaggcattgttgtaacatgagctagatgcaatattacgcgt Alignment from CESAR gTTCAAGGCAACACTGTGGCTAAGTGAGGAGCACCCACTGTCCTTGGGTGACCAGGTGACACCCATCATTGACCTGATGGCCATCAGCAACGCTCATTTTGCCAAGCTACGGGATTTCATCACTCTGCGTCTCCCACCAGGCTTCCCTGTCAAGATTg ttgagttgagtatggatatgtgtgttccaatgttatttattatttcacaggTTCAAAGCAACACTGTGGCTAAGTGAGGAGCACCCCTTAGCCCTGGGCGAACAGGTCACTCCCATCATCAGCCTAATGGCCATCAGCAAC------------------CAAGATTTCATAAGTCTTCGTCTCCCCCCTGGCTTTCCTGTCAAAATTggtaggtgggcaggcattgttgtaacatgagctagatgcaatattacgcgt Alignment from Spaln_aa2Genome GTTCAAGGCAACACTGTGGCTAAGTGAGGAGCACCCACTGTCCTTGGGTGACCAGGTGACACCCATCATTGACCTGATGGCCATCAGCAACGCTCATTTTGCCAAGCTACGGGATTTCATCACTCTGCGTCTCCCACCAGGCTTCCCTGTCAAGATTG ttgagttgagtatggatatgtgtgttccaatgttatttattatttcacagGTTCAAAGCAACACTGTGGCTAAGTGAGGAGCACCCCTTAGCCCTGGGCGAACAGGTCACTCCCATCATCAGCCTAATGGCCATCAGCAAC------------------CAAGATTTCATAAGTCTTCGTCTCCCCCCTGGCTTTCCTGTCAAAATTGgtaggtgggcaggcattgttgtaacatgagctagatgcaatattacgcgt Alignment from Spaln_nt2Genome GTTCAAGGCAACACTGTGGCTAAGTGAGGAGCACCCACTGTCCTTGGGTGACCAGGTGACACCCATCATTGACCTGATGGCCATCAGCAACGCTCATTTTGCCAAGCTACGGGATTTCATCACTCTGCGTCTCCCACCAGGCTTCCCTGTCAAGATTG ttgagttgagtatggatatgtgtgttccaatgttatttattatttcacagGTTCAAAGCAACACTGTGGCTAAGTGAGGAGCACCCCTTAGCCCTGGGCGAACAGGTCACTCCCATCATCAGCCTAATGGCCATCAGCAA-----------CCAA-------GATTTCATAAGTCTTCGTCTCCCCCCTGGCTTTCCTGTCAAAATTGgtaggtgggcaggcattgttgtaacatgagctagatgcaatattacgcgt Alignment from Pairagon GTTCAAGGCAACACTGTGGCTAAGTGAGGAGCACCCACTGTCCTTGGGTGACCAGGTGACACCCATCATTGACCTGATGGCCATCAGCAACGCTCATTTTGCCAAGCTACGGGATTTCATCACTCTGCGTCTCCCACCAGGCTTCCCTGTCAAGATTG ttgagttgagtatggatatgtgtgttccaatgttatttattatttcacagGTTCAAAGCAACACTGTGGCTAAGTGAGGAGCACCCCTTAGCCCTGGGCGAACAGGTCACTCCCATCATCAGCCTAATGGCCATCAGCAAC------------------CAAGATTTCATAAGTCTTCGTCTCCCCCCTGGCTTTCCTGTCAAAATTGgtaggtgggcaggcattgttgtaacatgagctagatgcaatattacgcgt Alignment from Exonerate_protein2genome GTTCAAGGCAACACTGTGGCTAAGTGAGGAGCACCCACTGTCCTTGGGTGACCAGGTGACACCCATCATTGACCTGATGGCCATCAGCAACGCTCATTTTGCCAAGCTACGG ttgagttgagtatggatatgtgtgttccaatgttatttattatttcacagGTTCAAAGCAACACTGTGGCTAAGTGAGGAGCACCCCTTAGCCCTGGGCGAACAGGTCACTCCCATCATCAGCCTAATGGCCATCAGCAACCAAGATTTCATAAGTCTTCGTctcccccctggctttcctgtcaaaattggtaggtgggcaggcattgttgtaacatgagctagatgcaatattacgcgt Alignment from Exonerate_coding2genome GTTCAAGGCAACACTGTGGCTAAGTGAGGAGCACCCACTGTCCTTGGGTGACCAGGTGACACCCATCATTGACCTGATGGCCATCAGCAACGCTCATTTTGCCAAGCTACGGGATTTCATCACTCTGCGTCTCCCACCAGGCTTCCCTGTCAAGATTG ttgagttgagtatggatatgtgtgttccaatgttatttattatttcacagGTTCAAAGCAACACTGTGGCTAAGTGAGGAGCACCCCTTAGC---------CCTGGGCGAACAGGTCAC---------TCCCATCATCAGCCTAATGGCCATCAGCAACCAAGATTTCATAAGTCTTCGTCTCCCCCCTGGCTTTCCTGTCAAAATTGgtaggtgggcaggcattgttgtaacatgagctagatgcaatattacgcgt Alignment from GeneWise GTTCAAGGCAACACTGTGGCTAAGTGAGGAGCACCCACTGTCCTTGGGTGACCAGGTGACACCCATCATTGACCTGATGGCCATCAGCAACGCTCATTTTGCCAAGCTACGGGATTTCATCACTCTGCGTCTCCCACCAGGCTTCCCTGTCAAGATTG ttgagttgagtatggatatgtgtgttccaatgttatttattatttcacagGTTCAAAGCAACACTGTGGCTAAGTGAGGAGCACCCCTTAGCCCTGGGCGAACAGGTCACTCCCATCATCAGCCTAATGGCCATCAGCAAC------------------CAAGATTTCATAAGTCTTCGTCTCCCCCCTGGCTTTCCTGTCAAAATTGgtaggtgggcaggcattgttgtaacatgagctagatgcaatattacgcgt #### Ankrd13d_ID465_8 --> 0 - 1 Original Alignment GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAg atcactctgctgtcccctcagtcccatgcatctccccctgtctccggcagGTATACAGTGCCACGAATGTTGAGCTGGTAACACGCACAAGAACAGAACATCTCTCTGACCAGGACAAGTTAAGGAACAAAggtgagcccacttgctacaggcttctggttaagctttctaggtgatgtacc Alignment from CESAR GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAg atcactctgctgtcccctcagtcccatgcatctccccctgtctccggcagGTATACAGTGCCACGAATGTTGAGCTGGTAACACGCACAAGAACAGAACATCTCTCTGACCAGGACAAGTTAAGGAACAAAggtgagcccacttgctacaggcttctggttaagctttctaggtgatgtacc Alignment from Spaln_aa2Genome GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG atcactctgctgtcccctcagtcccatgcatctccccctgtctccggcagGTATACAGTGCCACGAATGTTGAGCTGGTAACACGCACAAGAACAGAACATCTCTCTGACCAGGACAAGTTAAGGAACAAAGgtgagcccacttgctacaggcttctggttaagctttctaggtgatgtacc Alignment from Spaln_nt2Genome GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG atcactctgctgtcccctcagtcccatgcatctccccctgtctccggcagGTATACAGTGCCACGAATGTTGAGCTGGTAACACGCACAAGAACAGAACATCTCTCTGACCAGGACAAGTTAAGGAACAAAGgtgagcccacttgctacaggcttctggttaagctttctaggtgatgtacc Alignment from Pairagon GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG atcactctgctgtcccctcagtcccatgcatctccccctgtctccggcagGTATACAGTGCCACGAATGTTGAGCTGGTAACACGCACAAGAACAGAACATCTCTCTGACCAGGACAAGTTAAGGAACAAAGgtgagcccacttgctacaggcttctggttaagctttctaggtgatgtacc Alignment from Exonerate_protein2genome GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG atcactctgctgtcccctcagtcccatgcatctccccctgtctccggcagGTATACAGTGCCACGAATGTTGAGCTGGTAACACGCACAAGAACAGAACATCTCTCTGACCAGGACAAGTTAAGGAACAAAGgtgagcccacttgctacaggcttctggttaagctttctaggtgatgtacc Alignment from Exonerate_coding2genome GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAGGGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAG---CAGCAC atcactctgctgtcccctcagtcccatgcatctccccctgtctccggcagGTATACAGTGCCACGAATGTTGAGCTGGTAACACGCACAAGAACAGAACATCTCTCTGACCAGGACAAGTTAAGGAACAAAGGTGAGCCCACTTGCTACAGGCTTCTGGTTAAGCTTTCTAGGTGATGTACC Alignment from GeneWise GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAG atcactctgctgtcccctcagtcccatgcatctccccctgtctccggcagGTATACAGTGCCACGAATGTTGAGCTGGTAACACGCACAAGAACAGAACATCTCTCTGACCAGGACAAGTTAAGGAACAAAGgtgagcccacttgctacaggcttctggttaagctttctaggtgatgtacc #### Ankrd1_ID7095_8 --> 0 - 0 Original Alignment GAAGGAGACACCCCACTGCATGATGCTGTGAGGCTGAACCGCTATAAGATGATTCGACTCTTGATGACCTTCGGTGCGGACCTCAAGGTCAAGAACTGT ggatcacatctccaggtcccctgattgcagaatctttcccgtttccccagGAAGAAGCTACACCATTGCATGATGCAGTGAGATTAAACCGTTACAAGATGATT---CTCTTGATGACATTTGGTGCAGACCTGAAGGTGAAGAACTGTgtacctcggcaaatcaataagggtacaactattttatcccaaagtgttgt Alignment from CESAR GAAGGAGACACCCCACTGCATGATGCTGTGAGGCTGAACCGCTATAAGATGATTCGACTCTTGATGACCTTCGGTGCGGACCTCAAGGTCAAGAACTGT ggatcacatctccaggtcccctgattgcagaatctttcccgtttccccagGAAGAAGCTACACCATTGCATGATGCAGTGAGATTAAACCGTTACAAGATGATT---CTCTTGATGACATTTGGTGCAGACCTGAAGGTGAAGAACTGTgtacctcggcaaatcaataagggtacaactattttatcccaaagtgttgt Alignment from Spaln_aa2Genome GAAGGAGACACCCCACTGCATGATGCTGTGAGGCTGAACCGCTATAAGATGATTCGACTCTTGATGACCTTCGGTGCGGACCTCAAGGTCAAGAACTGT ggatcacatctccaggtcccctgattgcagaatctttcccgtttccccagGAAGAAGCTACACCATTGCATGATGCAGTGAGATTAAACCGTTACAAGATGATTCTC---TTGATGACATTTGGTGCAGACCTGAAGGTGAAGAACTGTgtacctcggcaaatcaataagggtacaactattttatcccaaagtgttgt Alignment from Spaln_nt2Genome GAAGGAGACACCCCACTGCATGATGCTGTGAGGCTGAACCGCTATAAGATGATTCGACTCTTGATGACCTTCGGTGCGGACCTCAAGGTCAAGAACTGT ggatcacatctccaggtcccctgattgcagaatctttcccgtttccccagGAAGAAGCTACACCATTGCATGATGCAGTGAGATTAAACCGTTACAAGATGATT---CTCTTGATGACATTTGGTGCAGACCTGAAGGTGAAGAACTGTgtacctcggcaaatcaataagggtacaactattttatcccaaagtgttgt Alignment from Pairagon GAAGGAGACACCCCACTGCATGATGCTGTGAGGCTGAACCGCTATAAGATGATTCGACTCTTGATGACCTTCGGTGCGGACCTCAAGGTCAAGAACTGT ggatcacatctccaggtcccctgattgcagaatctttcccgtttccccagGAAGAAGCTACACCATTGCATGATGCAGTGAGATTAAACCGTTACAAGATGATT---CTCTTGATGACATTTGGTGCAGACCTGAAGGTGAAGAACTGTgtacctcggcaaatcaataagggtacaactattttatcccaaagtgttgt Alignment from Exonerate_protein2genome GAAGGAGACACCCCACTGCATGATGCTGTGAGGCTGAACCGCTATAAGATGATTCGACTCTTGATGACCTTCGGTGCGGACCTCAAGGTCAAGAACTGT ggatcacatctccaggtcccctgattgcagaatctttcccgtttccccagGAAGAAGCTACACCATTGCATGATGCAGTGAGATTAAACCGTTACAAGATGATT---CTCTTGATGACATTTGGTGCAGACCTGAAGGTGAAGAACTGTgtacctcggcaaatcaataagggtacaactattttatcccaaagtgttgt Alignment from Exonerate_coding2genome GAAGGAGACACCCCACTGCATGATGCTGTGAGGCTGAACCGCTATAAGATGATTCGACTCTTGATGACCTTCGGTGCGGACCTCAAGGTCAAGAACTGT ggatcacatctccaggtcccctgattgcagaatctttcccgtttccccagGAAGAAGCTACACCATTGCATGATGCAGTGAGATTAAACCGTTACAAGATGATT---CTCTTGATGACATTTGGTGCAGACCTGAAGGTGAAGAACTGTgtacctcggcaaatcaataagggtacaactattttatcccaaagtgttgt Alignment from GeneWise ACACCCCACTGCATGATGCTGTGAGGCTGAACCGCTATAAGATGATTCGACTCTTGATGACCTTCGGTGCGGACCTCAAGGTCAAGAACTGT ggatcacatctccaggtcccctgattgcagaatctttcccgtttccccaggaagaagCTACACCATTGCATGATGCAGTGAGATTAAACCGTTACAAGATGATT---CTCTTGATGACATTTGGTGCAGACCTGAAGGTGAAGAACTGTgtacctcggcaaatcaataagggtacaactattttatcccaaagtgttgt #### Ankrd1_ID7100_5 --> 0 - 0 Original Alignment TATAAACGGACGGCACTCCACCGAGCATGCTTAGAAGGACACTTGGCGATCGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTCCGAGATATG gtgcgaatttattattaaagtgccatcgaagttcccattttgcttttcagTATAAACGGACAGCACTCCACCGGGCATGCTTAGAAGGACACTTGGCAATTGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTCCGAGATATGgtatgtgttgcattagaatgaaacaacataagcagctcttctgcaaagca Alignment from CESAR TATAAACGGACGGCACTCCACCGAGCATGCTTAGAAGGACACTTGGCGATCGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTCCGAGATATG gtgcgaatttattattaaagtgccatcgaagttcccattttgcttttcagTATAAACGGACAGCACTCCACCGGGCATGCTTAGAAGGACACTTGGCAATTGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTCCGAGATATGgtatgtgttgcattagaatgaaacaacataagcagctcttctgcaaagca Alignment from Spaln_aa2Genome TATAAACGGACGGCACTCCACCGAGCATGCTTAGAAGGACACTTGGCGATCGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTCCGAGATATG gtgcgaatttattattaaagtgccatcgaagttcccattttgcttttcagTATAAACGGACAGCACTCCACCGGGCATGCTTAGAAGGACACTTGGCAATTGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTCCGAGATATGgtatgtgttgcattagaatgaaacaacataagcagctcttctgcaaagca Alignment from Spaln_nt2Genome TATAAACGGACGGCACTCCACCGAGCATGCTTAGAAGGACACTTGGCGATCGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTCCGAGATATG gtgcgaatttattattaaagtgccatcgaagttcccattttgcttttcagTATAAACGGACAGCACTCCACCGGGCATGCTTAGAAGGACACTTGGCAATTGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTCCGAGATATGgtatgtgttgcattagaatgaaacaacataagcagctcttctgcaaagca Alignment from Pairagon TATAAACGGACGGCACTCCACCGAGCATGCTTAGAAGGACACTTGGCGATCGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTCCGAGATATG gtgcgaatttattattaaagtgccatcgaagttcccattttgcttttcagTATAAACGGACAGCACTCCACCGGGCATGCTTAGAAGGACACTTGGCAATTGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTCCGAGATATGgtatgtgttgcattagaatgaaacaacataagcagctcttctgcaaagca Alignment from Exonerate_protein2genome TATAAACGGACGGCACTCCACCGAGCATGCTTAGAAGGACACTTGGCGATCGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTCCGAGATATG gtgcgaatttattattaaagtgccatcgaagttcccattttgcttttcagTATAAACGGACAGCACTCCACCGGGCATGCTTAGAAGGACACTTGGCAATTGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTCCGAGATATGgtatgtgttgcattagaatgaaacaacataagcagctcttctgcaaagca Alignment from Exonerate_coding2genome TATAAACGGACGGCACTCCACCGAGCATGCTTAGAAGGACACTTGGCGATCGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTCCGAGATATG gtgcgaatttattattaaagtgccatcgaagttcccattttgcttttcagTATAAACGGACAGCACTCCACCGGGCATGCTTAGAAGGACACTTGGCAATTGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTCCGAGATATGgtatgtgttgcattagaatgaaacaacataagcagctcttctgcaaagca Alignment from GeneWise TATAAACGGACGGCACTCCACCGAGCATGCTTAGAAGGACACTTGGCGATCGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTCCGAGATATG gtgcgaatttattattaaagtgccatcgaagttcccattttgcttttcagTATAAACGGACAGCACTCCACCGGGCATGCTTAGAAGGACACTTGGCAATTGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTCCGAGATATGgtatgtgttgcattagaatgaaacaacataagcagctcttctgcaaagca #### Ankrd2_ID8368_2 --> 0 - 0 Original Alignment AAACTTCGAAGATCCGCTCCTGGGAAGCTGTCCATGGACATGCTAGTGCTAGAGGAAGAGAAGCGCCTCGGGGTTCAGAGTCCTGCTTTACAAAAGGTTAAG aaggatcaaaaatcctatcattagtatagagtcaatgtcttatacctcagAAGCTTCGAAGATCTGCTCCTGGGAAATTATCAATGGACATGCTAGTCATTGAG------AAACATCTT------CAGAGGCCAGCTTTACAAGGGTTCAAAgtacgagggttgatgagagaaggagtatggacttgggcaacaaatctccc Alignment from CESAR AAACTTCGAAGATCCGCTCCTGGGAAGCTGTCCATGGACATGCTAGTGCTAGAGGAAGAGAAGCGCCTCGGGGTTCAGAGTCCTGCTTTACAAAAGGTTAAG aaggatcaaaaatcctatcattagtatagagtcaatgtcttatacctcagAAGCTTCGAAGATCTGCTCCTGGGAAATTATCAATGGACATGCTAGTCATT------GAGAAACATCTT------CAGAGGCCAGCTTTACAAGGGTTCAAAgtacgagggttgatgagagaaggagtatggacttgggcaacaaatctccc Alignment from Spaln_aa2Genome AAACTTCGAAGATCCGCTCCTGGGAAGCTGTCCATGGACATGCTAGTGCTAGAGGAAGAGAAGCGCCTCGGGGTTCAGAGTCCTGCTTTACAAAAGGTTAAG aaggatcaaaaatcctatcattagtatagagtcaatgtcttatacctcagAAGCTTCGAAGATCTGCTCCTGGGAAATTATCAATGGACATGCTAGTCATT------GAGAAACATCTT------CAGAGGCCAGCTTTACAAGGGTTCAAAgtacgagggttgatgagagaaggagtatggacttgggcaacaaatctccc Alignment from Spaln_nt2Genome AAACTTCGAAGATCCGCTCCTGGGAAGCTGTCCATGGACATGCTAGTGCTAGAGGAAGAGAAGCGCCTCGGGGTTCAGAGTCCTGCTTTACAAAAGGTTAAG aaggatcaaaaatcctatcattagtatagagtcaatgtcttatacctcagAAGCTTCGAAGATCTGCTCCTGGGAAATTATCAATGGACATGCTAGTCATTGAGAAA--------CATC----TTCAGAGGCCAGCTTTACAAGGGTTCAAAgtacgagggttgatgagagaaggagtatggacttgggcaacaaatctccc Alignment from Pairagon AAACTTCGAAGATCCGCTCCTGGGAAGCTGTCCATGGACATGCTAGTGCTAGAGGAAGAGAAGCGCCTCGGGGTTCAGAGTCCTGCTTTACAAAAGGTTAAG aaggatcaaaaatcctatcattagtatagagtcaatgtcttatacctcagAAGCTTCGAAGATCTGCTCCTGGGAAATTATCAATGGACATGCTAGTCATTGAGAAACATC------------TTCAGAGGCCAGCTTTACAAGGGTTCAAAgtacgagggttgatgagagaaggagtatggacttgggcaacaaatctccc Alignment from Exonerate_protein2genome AAACTTCGAAGATCCGCTCCTGGGAAGCTGTCCATGGACATGCTAGTGCTAGAGGAAGAGAAGCGCCTCGGGGTTCAGAGTCCTGCTTTACAAAAGGTTAAG aaggatcaaaaatcctatcattagtatagagtcaatgtcttatacctcagAAGCTTCGAAGATCTGCTCCTGGGAAATTATCAATGGACATGCTAGTCATTGAGAAACAT------------CTTCAGAGGCCAGCTTTACAAGGGTTCAAAgtacgagggttgatgagagaaggagtatggacttgggcaacaaatctccc Alignment from Exonerate_coding2genome AAACTTCGAAGATCCGCTCCTGGGAAGCTGTCCATGGACATGCTAGTGCTAGAGGAAGAGAAGCGCCTCGGGGTTCAGAGTCCTGCTTTACAAAAGGTTAAG aaggatcaaaaatcctatcattagtatagagtcaatgtcttatacctcagAAGCTTCGAAGATCTGCTCCTGGGAAATTATCAATGGACATGCTAGTCATTGAGAAACAT------------CTTCAGAGGCCAGCTTTACAAGGGTTCAAAgtacgagggttgatgagagaaggagtatggacttgggcaacaaatctccc Alignment from GeneWise AAACTTCGAAGATCCGCTCCTGGGAAGCTGTCCATGGACATGCTAGTGCTAGAGGAAGAGAAGCGCCTCGGGGTTCAGAGTCCTGCTTTACAAAAGGTTAAG aaggatcaaaaatcctatcattagtatagagtcaatgtcttatacctcagAAGCTTCGAAGATCTGCTCCTGGGAAATTATCAATGGACATGCTAGTCATTGAGAAACAT------------CTTCAGAGGCCAGCTTTACAAGGGTTCAAAgtacgagggttgatgagagaaggagtatggacttgggcaacaaatctccc #### Ankrd2_ID8369_3 --> 0 - 0 Original Alignment GGCCAAGAGCGCGTGCGCAAGACATCCCTGGACCTGCGACGTGAGATCATTGATGTGGGTGGGATCCAGAACCTCATTGAACTGAGGAAAAAACGCAAGCAGAAAAAGCGAGATGCCCTGGCTGCAGCCCAGGAGCCTCCTCCAGAGCCAGAGGAGATC ttgtctgaaaggcactggcattggggtgacactgtcctttccacttgcagGGCCAAGAGCATGTCCAAAAAACATCTCTGCACTTGCGACGTGAGATCATTGATGTG------ATTCAAAACCTGATTGAACTGAGGAGAAAGCGGAGGCCGAAAAAACGAGATGCATTGGCTACAGCTCAAGAATCTCCTCGTAAGCCTGAGGATATCgtgagcgtccttaggtctgaacagatgtggatggggacaaagtcccaaag Alignment from CESAR GGCCAAGAGCGCGTGCGCAAGACATCCCTGGACCTGCGACGTGAGATCATTGATGTGGGTGGGATCCAGAACCTCATTGAACTGAGGAAAAAACGCAAGCAGAAAAAGCGAGATGCCCTGGCTGCAGCCCAGGAGCCTCCTCCAGAGCCAGAGGAGATC ttgtctgaaaggcactggcattggggtgacactgtcctttccacttgcagGGCCAAGAGCATGTCCAAAAAACATCTCTGCACTTGCGACGTGAGATCATTGATGTG------ATTCAAAACCTGATTGAACTGAGGAGAAAGCGGAGGCCGAAAAAACGAGATGCATTGGCTACAGCTCAAGAATCTCCTCGTAAGCCTGAGGATATCgtgagcgtccttaggtctgaacagatgtggatggggacaaagtcccaaag Alignment from Spaln_aa2Genome GGCCAAGAGCGCGTGCGCAAGACATCCCTGGACCTGCGACGTGAGATCATTGATGTGGGTGGGATCCAGAACCTCATTGAACTGAGGAAAAAACGCAAGCAGAAAAAGCGAGATGCCCTGGCTGCAGCCCAGGAGCCTCCTCCAGAGCCAGAGGAGATC ttgtctgaaaggcactggcattggggtgacactgtcctttccacttgcagGGCCAAGAGCATGTCCAAAAAACATCTCTGCACTTGCGACGTGAGATCATTGATGTG------ATTCAAAACCTGATTGAACTGAGGAGAAAGCGGAGGCCGAAAAAACGAGATGCATTGGCTACAGCTCAAGAATCTCCTCGTAAGCCTGAGGATATCgtgagcgtccttaggtctgaacagatgtggatggggacaaagtcccaaag Alignment from Spaln_nt2Genome GGCCAAGAGCGCGTGCGCAAGACATCCCTGGACCTGCGACGTGAGATCATTGATGTGGGTGGGATCCAGAACCTCATTGAACTGAGGAAAAAACGCAAGCAGAAAAAGCGAGATGCCCTGGCTGCAGCCCAGGAGCCTCCTCCAGAGCCAGAGGAGATC ttgtctgaaaggcactggcattggggtgacactgtcctttccacttgcagGGCCAAGAGCATGTCCAAAAAACATCTCTGCACTTGCGACGTGAGATCATTGATGT------GATTCAAAACCTGATTGAACTGAGGAGAAAGCGGAGGCCGAAAAAACGAGATGCATTGGCTACAGCTCAAGAATCTCCTCGTAAGCCTGAGGATATCgtgagcgtccttaggtctgaacagatgtggatggggacaaagtcccaaag Alignment from Pairagon GGCCAAGAGCGCGTGCGCAAGACATCCCTGGACCTGCGACGTGAGATCATTGATGTGGGTGGGATCCAGAACCTCATTGAACTGAGGAAAAAACGCAAGCAGAAAAAGCGAGATGCCCTGGCTGCAGCCCAGGAGCCTCCTCCAGAGCCAGAGGAGATC ttgtctgaaaggcactggcattggggtgacactgtcctttccacttgcagGGCCAAGAGCATGTCCAAAAAACATCTCTGCACTTGCGACGTGAGATCATTGATGT------GATTCAAAACCTGATTGAACTGAGGAGAAAGCGGAGGCCGAAAAAACGAGATGCATTGGCTACAGCTCAAGAATCTCCTCGTAAGCCTGAGGATATCgtgagcgtccttaggtctgaacagatgtggatggggacaaagtcccaaag Alignment from Exonerate_protein2genome GGCCAAGAGCGCGTGCGCAAGACATCCCTGGACCTGCGACGTGAGATCATTGATGTGGGTGGGATCCAGAACCTCATTGAACTGAGGAAAAAACGCAAGCAGAAAAAGCGAGATGCCCTGGCTGCAGCCCAGGAGCCTCCTCCAGAGCCAGAGGAGATC ttgtctgaaaggcactggcattggggtgacactgtcctttccacttgcagGGCCAAGAGCATGTCCAAAAAACATCTCTGCACTTGCGACGTGAGATCATTGATGTG------ATTCAAAACCTGATTGAACTGAGGAGAAAGCGGAGGCCGAAAAAACGAGATGCATTGGCTACAGCTCAAGAATCTCCTCGTAAGCCTGAGGATATCgtgagcgtccttaggtctgaacagatgtggatggggacaaagtcccaaag Alignment from Exonerate_coding2genome GGCCAAGAGCGCGTGCGCAAGACATCCCTGGACCTGCGACGTGAGATCATTGATGTGGGTGGGATCCAGAACCTCATTGAACTGAGGAAAAAACGCAAGCAGAAAAAGCGAGATGCCCTGGCTGCAGCCCAGGAGCCTCCTCCAGAGCCAGAGGAGATC ttgtctgaaaggcactggcattggggtgacactgtcctttccacttgcagGGCCAAGAGCATGTCCAAAAAACATCTCTGCACTTGCGACGTGAGATCATTGATGTG------ATTCAAAACCTGATTGAACTGAGGAGAAAGCGGAGGCCGAAAAAACGAGATGCATTGGCTACAGCTCAAGAATCTCCTCGTAAGCCTGAGGATATCgtgagcgtccttaggtctgaacagatgtggatggggacaaagtcccaaag Alignment from GeneWise GGCCAAGAGCGCGTGCGCAAGACATCCCTGGACCTGCGACGTGAGATCATTGATGTGGGTGGGATCCAGAACCTCATTGAACTGAGGAAAAAACGCAAGCAGAAAAAGCGAGATGCCCTGGCTGCAGCCCAGGAGCCTCCTCCAGAGCCAGAGGAGATC ttgtctgaaaggcactggcattggggtgacactgtcctttccacttgcagGGCCAAGAGCATGTCCAAAAAACATCTCTGCACTTGCGACGTGAGATCATTGATGTG------ATTCAAAACCTGATTGAACTGAGGAGAAAGCGGAGGCCGAAAAAACGAGATGCATTGGCTACAGCTCAAGAATCTCCTCGTAAGCCTGAGGATATCgtgagcgtccttaggtctgaacagatgtggatggggacaaagtcccaaag #### Anxa1_ID4764_6 --> 2 - 0 Original Alignment agCTGAAAAGAGATCTGGCCAAAGACATCACTTCAGATACATCTGGAGACTTTCGGAAAGCCTTGCTTGCTCTTGCCAAG agggaactcccatgcagaatgatgagcttattggtgtatattttttatagagCTGAAAAGAGATCTTGCCAAGGACATCACTTCAGACACAACTGGAGACTTTAGGAAAGCTTTGTTGGCTCTTTCGAAGgtgagccatacatgcaatgcactggtactgttgttctgcgtccaggaagt Alignment from CESAR agCTGAAAAGAGATCTGGCCAAAGACATCACTTCAGATACATCTGGAGACTTTCGGAAAGCCTTGCTTGCTCTTGCCAAG agggaactcccatgcagaatgatgagcttattggtgtatattttttatagagCTGAAAAGAGATCTTGCCAAGGACATCACTTCAGACACAACTGGAGACTTTAGGAAAGCTTTGTTGGCTCTTTCGAAGgtgagccatacatgcaatgcactggtactgttgttctgcgtccaggaagt Alignment from Spaln_aa2Genome AGCTGAAAAGAGATCTGGCCAAAGACATCACTTCAGATACATCTGGAGACTTTCGGAAAGCCTTGCTTGCTCTTGCCAAG agggaactcccatgcagaatgatgagcttattggtgtatattttttatagAGCTGAAAAGAGATCTTGCCAAGGACATCACTTCAGACACAACTGGAGACTTTAGGAAAGCTTTGTTGGCTCTTTCGAAGgtgagccatacatgcaatgcactggtactgttgttctgcgtccaggaagt Alignment from Spaln_nt2Genome AGCTGAAAAGAGATCTGGCCAAAGACATCACTTCAGATACATCTGGAGACTTTCGGAAAGCCTTGCTTGCTCTTGCCAAG agggaactcccatgcagaatgatgagcttattggtgtatattttttatagAGCTGAAAAGAGATCTTGCCAAGGACATCACTTCAGACACAACTGGAGACTTTAGGAAAGCTTTGTTGGCTCTTTCGAAGgtgagccatacatgcaatgcactggtactgttgttctgcgtccaggaagt Alignment from Pairagon AGCTGAAAAGAGATCTGGCCAAAGACATCACTTCAGATACATCTGGAGACTTTCGGAAAGCCTTGCTTGCTCTTGCCAAG agggaactcccatgcagaatgatgagcttattggtgtatattttttatagAGCTGAAAAGAGATCTTGCCAAGGACATCACTTCAGACACAACTGGAGACTTTAGGAAAGCTTTGTTGGCTCTTTCGAAGgtgagccatacatgcaatgcactggtactgttgttctgcgtccaggaagt Alignment from Exonerate_protein2genome AGCTGAAAAGAGATCTGGCCAAAGACATCACTTCAGATACATCTGGAGACTTTCGGAAAGCCTTGCTTGCTCTTGCCAAG agggaactcccatgcagaatgatgagcttattggtgtatattttttatagAGCTGAAAAGAGATCTTGCCAAGGACATCACTTCAGACACAACTGGAGACTTTAGGAAAGCTTTGTTGGCTCTTTCGAAGgtgagccatacatgcaatgcactggtactgttgttctgcgtccaggaagt Alignment from Exonerate_coding2genome AGCTGAAAAGAGATCTGGCCAAAGACATCACTTCAGATACATCTGGAGACTTTCGGAAAGCCTTGCTTGCTCTTGCCAAG agggaactcccatgcagaatgatgagcttattggtgtatattttttatagAGCTGAAAAGAGATCTTGCCAAGGACATCACTTCAGACACAACTGGAGACTTTAGGAAAGCTTTGTTGGCTCTTTCGAAGgtgagccatacatgcaatgcactggtactgttgttctgcgtccaggaagt Alignment from GeneWise AGCTGAAAAGAGATCTGGCCAAAGACATCACTTCAGATACATCTGGAGACTTTCGGAAAGCCTTGCTTGCTCTTGCCAAG agggaactcccatgcagaatgatgagcttattggtgtatattttttatagAGCTGAAAAGAGATCTTGCCAAGGACATCACTTCAGACACAACTGGAGACTTTAGGAAAGCTTTGTTGGCTCTTTCGAAGgtgagccatacatgcaatgcactggtactgttgttctgcgtccaggaagt #### Apba1_ID5228_2 --> 0 - 0 Original Alignment TCTCCGTCTCCTGGCAGTTCCTCACCCCTGGGTGCTGAGTCATCAAGCATACCCCTTCATCCCGGCGACCCCACGGAAGCCTCCACAAATAAAGAG ttctacagagcctgatgcctcagtgtgtcgctctgccgcttccttcccagTCACCATCTCCTGGGAGTTCTTCACCTTTAGGTGCAGAGTCATCCAGCGTGCCTCTTCACCCAAGTGACCCCATGGAAGCCTCTAGAAATAAAGACgtaactgaaggtctgcctaagccactatgattcagcagaaggatctccct Alignment from CESAR TCTCCGTCTCCTGGCAGTTCCTCACCCCTGGGTGCTGAGTCATCAAGCATACCCCTTCATCCCGGCGACCCCACGGAAGCCTCCACAAATAAAGAG ttctacagagcctgatgcctcagtgtgtcgctctgccgcttccttcccagTCACCATCTCCTGGGAGTTCTTCACCTTTAGGTGCAGAGTCATCCAGCGTGCCTCTTCACCCAAGTGACCCCATGGAAGCCTCTAGAAATAAAGACgtaactgaaggtctgcctaagccactatgattcagcagaaggatctccct Alignment from Spaln_aa2Genome TCTCCGTCTCCTGGCAGTTCCTCACCCCTGGGTGCTGAGTCATCAAGCATACCCCTTCATCCCGGCGACCCCACGGAAGCCTCCACAAATAAAGAG ttctacagagcctgatgcctcagtgtgtcgctctgccgcttccttcccagTCACCATCTCCTGGGAGTTCTTCACCTTTAGGTGCAGAGTCATCCAGCGTGCCTCTTCACCCAAGTGACCCCATGGAAGCCTCTAGAAATAAAGACgtaactgaaggtctgcctaagccactatgattcagcagaaggatctccct Alignment from Spaln_nt2Genome TCTCCGTCTCCTGGCAGTTCCTCACCCCTGGGTGCTGAGTCATCAAGCATACCCCTTCATCCCGGCGACCCCACGGAAGCCTCCACAAATAAAGAG ttctacagagcctgatgcctcagtgtgtcgctctgccgcttccttcccagTCACCATCTCCTGGGAGTTCTTCACCTTTAGGTGCAGAGTCATCCAGCGTGCCTCTTCACCCAAGTGACCCCATGGAAGCCTCTAGAAATAAAGACgtaactgaaggtctgcctaagccactatgattcagcagaaggatctccct Alignment from Pairagon TCTCCGTCTCCTGGCAGTTCCTCACCCCTGGGTGCTGAGTCATCAAGCATACCCCTTCATCCCGGCGACCCCACGGAAGCCTCCACAAATAAAGAG ttctacagagcctgatgcctcagtgtgtcgctctgccgcttccttcccagTCACCATCTCCTGGGAGTTCTTCACCTTTAGGTGCAGAGTCATCCAGCGTGCCTCTTCACCCAAGTGACCCCATGGAAGCCTCTAGAAATAAAGACgtaactgaaggtctgcctaagccactatgattcagcagaaggatctccct Alignment from Exonerate_protein2genome TCTCCGTCTCCTGGCAGTTCCTCACCCCTGGGTGCTGAGTCATCAAGCATACCCCTTCATCCCGGCGACCCCACGGAAGCCTCCACAAATAAAGAG ttctacagagcctgatgcctcagtgtgtcgctctgccgcttccttcccagTCACCATCTCCTGGGAGTTCTTCACCTTTAGGTGCAGAGTCATCCAGCGTGCCTCTTCACCCAAGTGACCCCATGGAAGCCTCTAGAAATAAAGACgtaactgaaggtctgcctaagccactatgattcagcagaaggatctccct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TCTCCGTCTCCTGGCAGTTCCTCACCCCTGGGTGCTGAGTCATCAAGCATACCCCTTCATCCCGGCGACCCCACGGAAGCCTCCACAAATAAAGAG ttctacagagcctgatgcctcagtgtgtcgctctgccgcttccttcccagTCACCATCTCCTGGGAGTTCTTCACCTTTAGGTGCAGAGTCATCCAGCGTGCCTCTTCACCCAAGTGACCCCATGGAAGCCTCTAGAAATAAAGACgtaactgaaggtctgcctaagccactatgattcagcagaaggatctccct #### Apba1_ID5241_10 --> 0 - 0 Original Alignment GGCTTAAAGAACCAGTCCCGAGTGAAGCTGAATATCGTGAGGTGCCCCCCAGTGACCACAGTGCTAATAAGGAGGCCGGACCTTCGCTACCAGCTGGGTTTCAGCGTACAGAATGGAATT gatgcctctgctccttaatcagtcgatgctttcccgtccttctcttctagGGTTTAAAGAACCAGTCCCGTGTGAAGCTGAACATTGTGAGGTGCCCCCTGGTTACCACAGTGCTGATAAGGCGGCCTGACCTTCGCTATCAGCTAGGTTTTAGCATACAGAATGGAATTgttagacaccaagaatttgtattgtctcaagagttgaacgaaactagagg Alignment from CESAR GGCTTAAAGAACCAGTCCCGAGTGAAGCTGAATATCGTGAGGTGCCCCCCAGTGACCACAGTGCTAATAAGGAGGCCGGACCTTCGCTACCAGCTGGGTTTCAGCGTACAGAATGGAATT gatgcctctgctccttaatcagtcgatgctttcccgtccttctcttctagGGTTTAAAGAACCAGTCCCGTGTGAAGCTGAACATTGTGAGGTGCCCCCTGGTTACCACAGTGCTGATAAGGCGGCCTGACCTTCGCTATCAGCTAGGTTTTAGCATACAGAATGGAATTgttagacaccaagaatttgtattgtctcaagagttgaacgaaactagagg Alignment from Spaln_aa2Genome GGCTTAAAGAACCAGTCCCGAGTGAAGCTGAATATCGTGAGGTGCCCCCCAGTGACCACAGTGCTAATAAGGAGGCCGGACCTTCGCTACCAGCTGGGTTTCAGCGTACAGAATGGAATT gatgcctctgctccttaatcagtcgatgctttcccgtccttctcttctagGGTTTAAAGAACCAGTCCCGTGTGAAGCTGAACATTGTGAGGTGCCCCCTGGTTACCACAGTGCTGATAAGGCGGCCTGACCTTCGCTATCAGCTAGGTTTTAGCATACAGAATGGAATTgttagacaccaagaatttgtattgtctcaagagttgaacgaaactagagg Alignment from Spaln_nt2Genome GGCTTAAAGAACCAGTCCCGAGTGAAGCTGAATATCGTGAGGTGCCCCCCAGTGACCACAGTGCTAATAAGGAGGCCGGACCTTCGCTACCAGCTGGGTTTCAGCGTACAGAATGGAATT gatgcctctgctccttaatcagtcgatgctttcccgtccttctcttctagGGTTTAAAGAACCAGTCCCGTGTGAAGCTGAACATTGTGAGGTGCCCCCTGGTTACCACAGTGCTGATAAGGCGGCCTGACCTTCGCTATCAGCTAGGTTTTAGCATACAGAATGGAATTgttagacaccaagaatttgtattgtctcaagagttgaacgaaactagagg Alignment from Pairagon GGCTTAAAGAACCAGTCCCGAGTGAAGCTGAATATCGTGAGGTGCCCCCCAGTGACCACAGTGCTAATAAGGAGGCCGGACCTTCGCTACCAGCTGGGTTTCAGCGTACAGAATGGAATT gatgcctctgctccttaatcagtcgatgctttcccgtccttctcttctagGGTTTAAAGAACCAGTCCCGTGTGAAGCTGAACATTGTGAGGTGCCCCCTGGTTACCACAGTGCTGATAAGGCGGCCTGACCTTCGCTATCAGCTAGGTTTTAGCATACAGAATGGAATTgttagacaccaagaatttgtattgtctcaagagttgaacgaaactagagg Alignment from Exonerate_protein2genome GGCTTAAAGAACCAGTCCCGAGTGAAGCTGAATATCGTGAGGTGCCCCCCAGTGACCACAGTGCTAATAAGGAGGCCGGACCTTCGCTACCAGCTGGGTTTCAGCGTACAGAATGGAATT gatgcctctgctccttaatcagtcgatgctttcccgtccttctcttctagGGTTTAAAGAACCAGTCCCGTGTGAAGCTGAACATTGTGAGGTGCCCCCTGGTTACCACAGTGCTGATAAGGCGGCCTGACCTTCGCTATCAGCTAGGTTTTAGCATACAGAATGGAATTgttagacaccaagaatttgtattgtctcaagagttgaacgaaactagagg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGCTTAAAGAACCAGTCCCGAGTGAAGCTGAATATCGTGAGGTGCCCCCCAGTGACCACAGTGCTAATAAGGAGGCCGGACCTTCGCTACCAGCTGGGTTTCAGCGTACAGAATGGAATT gatgcctctgctccttaatcagtcgatgctttcccgtccttctcttctagGGTTTAAAGAACCAGTCCCGTGTGAAGCTGAACATTGTGAGGTGCCCCCTGGTTACCACAGTGCTGATAAGGCGGCCTGACCTTCGCTATCAGCTAGGTTTTAGCATACAGAATGGAATTgttagacaccaagaatttgtattgtctcaagagttgaacgaaactagagg #### Arhgap19_ID8267_6 --> 0 - 0 Original Alignment GTCACTGCAAATGATCTTCAGGAGAATATCATAAAGTTAAACACAGGAATGGCTTTTATGATCAAACACTCTCAGAAACTTTTTAAG ccagattatcccatagctacaagatcttaactgtcccctccggcccgcagGTCACTGCCAATGATCTTGAGGAGAATATAATAAAATTAAACACAGGCATGGCTTTTATGCTCAAACACTCTCAGAAACTGTTCAAGgtaagtgagacattgtgtgctgcttcttagtaaaaggagatgcaacagcc Alignment from CESAR GTCACTGCAAATGATCTTCAGGAGAATATCATAAAGTTAAACACAGGAATGGCTTTTATGATCAAACACTCTCAGAAACTTTTTAAG ccagattatcccatagctacaagatcttaactgtcccctccggcccgcagGTCACTGCCAATGATCTTGAGGAGAATATAATAAAATTAAACACAGGCATGGCTTTTATGCTCAAACACTCTCAGAAACTGTTCAAGgtaagtgagacattgtgtgctgcttcttagtaaaaggagatgcaacagcc Alignment from Spaln_aa2Genome GTCACTGCAAATGATCTTCAGGAGAATATCATAAAGTTAAACACAGGAATGGCTTTTATGATCAAACACTCTCAGAAACTTTTTAAG ccagattatcccatagctacaagatcttaactgtcccctccggcccgcagGTCACTGCCAATGATCTTGAGGAGAATATAATAAAATTAAACACAGGCATGGCTTTTATGCTCAAACACTCTCAGAAACTGTTCAAGgtaagtgagacattgtgtgctgcttcttagtaaaaggagatgcaacagcc Alignment from Spaln_nt2Genome GTCACTGCAAATGATCTTCAGGAGAATATCATAAAGTTAAACACAGGAATGGCTTTTATGATCAAACACTCTCAGAAACTTTTTAAG ccagattatcccatagctacaagatcttaactgtcccctccggcccgcagGTCACTGCCAATGATCTTGAGGAGAATATAATAAAATTAAACACAGGCATGGCTTTTATGCTCAAACACTCTCAGAAACTGTTCAAGgtaagtgagacattgtgtgctgcttcttagtaaaaggagatgcaacagcc Alignment from Pairagon GTCACTGCAAATGATCTTCAGGAGAATATCATAAAGTTAAACACAGGAATGGCTTTTATGATCAAACACTCTCAGAAACTTTTTAAG ccagattatcccatagctacaagatcttaactgtcccctccggcccgcagGTCACTGCCAATGATCTTGAGGAGAATATAATAAAATTAAACACAGGCATGGCTTTTATGCTCAAACACTCTCAGAAACTGTTCAAGgtaagtgagacattgtgtgctgcttcttagtaaaaggagatgcaacagcc Alignment from Exonerate_protein2genome GTCACTGCAAATGATCTTCAGGAGAATATCATAAAGTTAAACACAGGAATGGCTTTTATGATCAAACACTCTCAGAAACTTTTTAAG ccagattatcccatagctacaagatcttaactgtcccctccggcccgcagGTCACTGCCAATGATCTTGAGGAGAATATAATAAAATTAAACACAGGCATGGCTTTTATGCTCAAACACTCTCAGAAACTGTTCAAGgtaagtgagacattgtgtgctgcttcttagtaaaaggagatgcaacagcc Alignment from Exonerate_coding2genome GTCACTGCAAATGATCTTCAGGAGAATATCATAAAGTTAAACACAGGAATGGCTTTTATGATCAAACACTCTCAGAAACTTTTTAAG ccagattatcccatagctacaagatcttaactgtcccctccggcccgcagGTCACTGCCAATGATCTTGAGGAGAATATAATAAAATTAAACACAGGCATGGCTTTTATGCTCAAACACTCTCAGAAACTGTTCAAGgtaagtgagacattgtgtgctgcttcttagtaaaaggagatgcaacagcc Alignment from GeneWise GTCACTGCAAATGATCTTCAGGAGAATATCATAAAGTTAAACACAGGAATGGCTTTTATGATCAAACACTCTCAGAAACTTTTTAAG ccagattatcccatagctacaagatcttaactgtcccctccggcccgcagGTCACTGCCAATGATCTTGAGGAGAATATAATAAAATTAAACACAGGCATGGCTTTTATGCTCAAACACTCTCAGAAACTGTTCAAGgtaagtgagacattgtgtgctgcttcttagtaaaaggagatgcaacagcc #### Arhgap19_ID8268_5 --> 2 - 0 Original Alignment atCTGATGCAGTTTGATGATAAAGGAAATAAGACCAACATACCAGACAAGGAGCGGCAGATTGAGGCCCTGCAGCTGCTCTTCCTCATCCTCCCTCCAGCCAATCGTAACTTGCTAAAGTTACTGCTTGATCTCCTGTATCAGACAGCGAAGAAGCAAGACAAGAATAAGATGTCTGCCCATAACCTTGCTCTTATGTTTGCACCCCATGTCCTGTGGCCCAAAAAT caaaaatcaattgaacagacaggattcaagttttgcttctctcattgtagatCTGATGCAGTTTGATGATAAGGGAAATAAGACCAATATTTCAGACAAAGAGCGGCAGATTGAGGCCTTGCAGCTGCTCTTCCTCATCCTCCCTCCAGCCAATCGTAACTTGCTTAAGTTACTGCTCGATCTCCTGTATCAGACAGCAAAGAAGCAAGACAAGAATAAGATGTCTGCCCATAACCTTGCTCTTATGTTTGCACCCCATGTCCTGTGGCCCGAAAATgtatgtattaggaagcttgcttcctatcctttcttctccttttacttcac Alignment from CESAR atCTGATGCAGTTTGATGATAAAGGAAATAAGACCAACATACCAGACAAGGAGCGGCAGATTGAGGCCCTGCAGCTGCTCTTCCTCATCCTCCCTCCAGCCAATCGTAACTTGCTAAAGTTACTGCTTGATCTCCTGTATCAGACAGCGAAGAAGCAAGACAAGAATAAGATGTCTGCCCATAACCTTGCTCTTATGTTTGCACCCCATGTCCTGTGGCCCAAAAAT caaaaatcaattgaacagacaggattcaagttttgcttctctcattgtagatCTGATGCAGTTTGATGATAAGGGAAATAAGACCAATATTTCAGACAAAGAGCGGCAGATTGAGGCCTTGCAGCTGCTCTTCCTCATCCTCCCTCCAGCCAATCGTAACTTGCTTAAGTTACTGCTCGATCTCCTGTATCAGACAGCAAAGAAGCAAGACAAGAATAAGATGTCTGCCCATAACCTTGCTCTTATGTTTGCACCCCATGTCCTGTGGCCCGAAAATgtatgtattaggaagcttgcttcctatcctttcttctccttttacttcac Alignment from Spaln_aa2Genome ATCTGATGCAGTTTGATGATAAAGGAAATAAGACCAACATACCAGACAAGGAGCGGCAGATTGAGGCCCTGCAGCTGCTCTTCCTCATCCTCCCTCCAGCCAATCGTAACTTGCTAAAGTTACTGCTTGATCTCCTGTATCAGACAGCGAAGAAGCAAGACAAGAATAAGATGTCTGCCCATAACCTTGCTCTTATGTTTGCACCCCATGTCCTGTGGCCCAAAAAT caaaaatcaattgaacagacaggattcaagttttgcttctctcattgtagATCTGATGCAGTTTGATGATAAGGGAAATAAGACCAATATTTCAGACAAAGAGCGGCAGATTGAGGCCTTGCAGCTGCTCTTCCTCATCCTCCCTCCAGCCAATCGTAACTTGCTTAAGTTACTGCTCGATCTCCTGTATCAGACAGCAAAGAAGCAAGACAAGAATAAGATGTCTGCCCATAACCTTGCTCTTATGTTTGCACCCCATGTCCTGTGGCCCGAAAATgtatgtattaggaagcttgcttcctatcctttcttctccttttacttcac Alignment from Spaln_nt2Genome ATCTGATGCAGTTTGATGATAAAGGAAATAAGACCAACATACCAGACAAGGAGCGGCAGATTGAGGCCCTGCAGCTGCTCTTCCTCATCCTCCCTCCAGCCAATCGTAACTTGCTAAAGTTACTGCTTGATCTCCTGTATCAGACAGCGAAGAAGCAAGACAAGAATAAGATGTCTGCCCATAACCTTGCTCTTATGTTTGCACCCCATGTCCTGTGGCCCAAAAAT caaaaatcaattgaacagacaggattcaagttttgcttctctcattgtagATCTGATGCAGTTTGATGATAAGGGAAATAAGACCAATATTTCAGACAAAGAGCGGCAGATTGAGGCCTTGCAGCTGCTCTTCCTCATCCTCCCTCCAGCCAATCGTAACTTGCTTAAGTTACTGCTCGATCTCCTGTATCAGACAGCAAAGAAGCAAGACAAGAATAAGATGTCTGCCCATAACCTTGCTCTTATGTTTGCACCCCATGTCCTGTGGCCCGAAAATgtatgtattaggaagcttgcttcctatcctttcttctccttttacttcac Alignment from Pairagon ATCTGATGCAGTTTGATGATAAAGGAAATAAGACCAACATACCAGACAAGGAGCGGCAGATTGAGGCCCTGCAGCTGCTCTTCCTCATCCTCCCTCCAGCCAATCGTAACTTGCTAAAGTTACTGCTTGATCTCCTGTATCAGACAGCGAAGAAGCAAGACAAGAATAAGATGTCTGCCCATAACCTTGCTCTTATGTTTGCACCCCATGTCCTGTGGCCCAAAAAT caaaaatcaattgaacagacaggattcaagttttgcttctctcattgtagATCTGATGCAGTTTGATGATAAGGGAAATAAGACCAATATTTCAGACAAAGAGCGGCAGATTGAGGCCTTGCAGCTGCTCTTCCTCATCCTCCCTCCAGCCAATCGTAACTTGCTTAAGTTACTGCTCGATCTCCTGTATCAGACAGCAAAGAAGCAAGACAAGAATAAGATGTCTGCCCATAACCTTGCTCTTATGTTTGCACCCCATGTCCTGTGGCCCGAAAATgtatgtattaggaagcttgcttcctatcctttcttctccttttacttcac Alignment from Exonerate_protein2genome ATCTGATGCAGTTTGATGATAAAGGAAATAAGACCAACATACCAGACAAGGAGCGGCAGATTGAGGCCCTGCAGCTGCTCTTCCTCATCCTCCCTCCAGCCAATCGTAACTTGCTAAAGTTACTGCTTGATCTCCTGTATCAGACAGCGAAGAAGCAAGACAAGAATAAGATGTCTGCCCATAACCTTGCTCTTATGTTTGCACCCCATGTCCTGTGGCCCAAAAAT caaaaatcaattgaacagacaggattcaagttttgcttctctcattgtagATCTGATGCAGTTTGATGATAAGGGAAATAAGACCAATATTTCAGACAAAGAGCGGCAGATTGAGGCCTTGCAGCTGCTCTTCCTCATCCTCCCTCCAGCCAATCGTAACTTGCTTAAGTTACTGCTCGATCTCCTGTATCAGACAGCAAAGAAGCAAGACAAGAATAAGATGTCTGCCCATAACCTTGCTCTTATGTTTGCACCCCATGTCCTGTGGCCCGAAAATgtatgtattaggaagcttgcttcctatcctttcttctccttttacttcac Alignment from Exonerate_coding2genome ATCTGATGCAGTTTGATGATAAAGGAAATAAGACCAACATACCAGACAAGGAGCGGCAGATTGAGGCCCTGCAGCTGCTCTTCCTCATCCTCCCTCCAGCCAATCGTAACTTGCTAAAGTTACTGCTTGATCTCCTGTATCAGACAGCGAAGAAGCAAGACAAGAATAAGATGTCTGCCCATAACCTTGCTCTTATGTTTGCACCCCATGTCCTGTGGCCCAAAAAT caaaaatcaattgaacagacaggattcaagttttgcttctctcattgtagATCTGATGCAGTTTGATGATAAGGGAAATAAGACCAATATTTCAGACAAAGAGCGGCAGATTGAGGCCTTGCAGCTGCTCTTCCTCATCCTCCCTCCAGCCAATCGTAACTTGCTTAAGTTACTGCTCGATCTCCTGTATCAGACAGCAAAGAAGCAAGACAAGAATAAGATGTCTGCCCATAACCTTGCTCTTATGTTTGCACCCCATGTCCTGTGGCCCGAAAATgtatgtattaggaagcttgcttcctatcctttcttctccttttacttcac Alignment from GeneWise ATCTGATGCAGTTTGATGATAAAGGAAATAAGACCAACATACCAGACAAGGAGCGGCAGATTGAGGCCCTGCAGCTGCTCTTCCTCATCCTCCCTCCAGCCAATCGTAACTTGCTAAAGTTACTGCTTGATCTCCTGTATCAGACAGCGAAGAAGCAAGACAAGAATAAGATGTCTGCCCATAACCTTGCTCTTATGTTTGCACCCCATGTCCTGTGGCCCAAAAAT caaaaatcaattgaacagacaggattcaagttttgcttctctcattgtagATCTGATGCAGTTTGATGATAAGGGAAATAAGACCAATATTTCAGACAAAGAGCGGCAGATTGAGGCCTTGCAGCTGCTCTTCCTCATCCTCCCTCCAGCCAATCGTAACTTGCTTAAGTTACTGCTCGATCTCCTGTATCAGACAGCAAAGAAGCAAGACAAGAATAAGATGTCTGCCCATAACCTTGCTCTTATGTTTGCACCCCATGTCCTGTGGCCCGAAAATgtatgtattaggaagcttgcttcctatcctttcttctccttttacttcac #### Arl2_ID1476_3 --> 1 - 0 Original Alignment aTTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTACTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTGGAGGAG gactctgaggtcatggtcatggtgagatacagatggtcaatctctcacagaTTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCATATTGGAGGAACTACTTTGAGAGCATGGATGGTTTCATCTGGGTGGTAGACAGTGCTTACCACCAGCGCATGCAGGACTGTCAGCTAGATTTGCAGAGCCTACTGGTTGAAGAGgtacaactggagctctgatttggctacctttgctgggccagtttggacgg Alignment from CESAR aTTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTACTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTGGAGGAG gactctgaggtcatggtcatggtgagatacagatggtcaatctctcacagaTTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCATATTGGAGGAACTACTTTGAGAGCATGGATGGTTTCATCTGGGTGGTAGACAGTGCTTACCACCAGCGCATGCAGGACTGTCAGCTAGATTTGCAGAGCCTACTGGTTGAAGAGgtacaactggagctctgatttggctacctttgctgggccagtttggacgg Alignment from Spaln_aa2Genome ATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTACTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTGGAGGAG gactctgaggtcatggtcatggtgagatacagatggtcaatctctcacagATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCATATTGGAGGAACTACTTTGAGAGCATGGATGGTTTCATCTGGGTGGTAGACAGTGCTTACCACCAGCGCATGCAGGACTGTCAGCTAGATTTGCAGAGCCTACTGGTTGAAGAGgtacaactggagctctgatttggctacctttgctgggccagtttggacgg Alignment from Spaln_nt2Genome ATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTACTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTGGAGGAG gactctgaggtcatggtcatggtgagatacagatggtcaatctctcacagATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCATATTGGAGGAACTACTTTGAGAGCATGGATGGTTTCATCTGGGTGGTAGACAGTGCTTACCACCAGCGCATGCAGGACTGTCAGCTAGATTTGCAGAGCCTACTGGTTGAAGAGgtacaactggagctctgatttggctacctttgctgggccagtttggacgg Alignment from Pairagon ATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTACTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTGGAGGAG gactctgaggtcatggtcatggtgagatacagatggtcaatctctcacagATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCATATTGGAGGAACTACTTTGAGAGCATGGATGGTTTCATCTGGGTGGTAGACAGTGCTTACCACCAGCGCATGCAGGACTGTCAGCTAGATTTGCAGAGCCTACTGGTTGAAGAGgtacaactggagctctgatttggctacctttgctgggccagtttggacgg Alignment from Exonerate_protein2genome ATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTACTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTGGAGGAG gactctgaggtcatggtcatggtgagatacagatggtcaatctctcacagATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCATATTGGAGGAACTACTTTGAGAGCATGGATGGTTTCATCTGGGTGGTAGACAGTGCTTACCACCAGCGCATGCAGGACTGTCAGCTAGATTTGCAGAGCCTACTGGTTGAAGAGgtacaactggagctctgatttggctacctttgctgggccagtttggacgg Alignment from Exonerate_coding2genome ATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTACTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTGGAGGAG gactctgaggtcatggtcatggtgagatacagatggtcaatctctcacagATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCATATTGGAGGAACTACTTTGAGAGCATGGATGGTTTCATCTGGGTGGTAGACAGTGCTTACCACCAGCGCATGCAGGACTGTCAGCTAGATTTGCAGAGCCTACTGGTTGAAGAGgtacaactggagctctgatttggctacctttgctgggccagtttggacgg Alignment from GeneWise ATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTACTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTGGAGGAG gactctgaggtcatggtcatggtgagatacagatggtcaatctctcacagATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCATATTGGAGGAACTACTTTGAGAGCATGGATGGTTTCATCTGGGTGGTAGACAGTGCTTACCACCAGCGCATGCAGGACTGTCAGCTAGATTTGCAGAGCCTACTGGTTGAAGAGgtacaactggagctctgatttggctacctttgctgggccagtttggacgg #### Arl3_ID9952_4 --> 0 - 0 Original Alignment ATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAG tcattctttccaatgtttgtagaaggacaatactttgatttattttctagATCTATGTAATTGACAGTGCTGACAGAAAGAGATTTGAGCAGACAGGCCAGgtaggcgaattctttttgtgtagatgttaccgacctaaccatagcgccag Alignment from CESAR ATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAG tcattctttccaatgtttgtagaaggacaatactttgatttattttctagATCTATGTAATTGACAGTGCTGACAGAAAGAGATTTGAGCAGACAGGCCAGgtaggcgaattctttttgtgtagatgttaccgacctaaccatagcgccag Alignment from Spaln_aa2Genome ATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAG tcattctttccaatgtttgtagaaggacaatactttgatttattttctagATCTATGTAATTGACAGTGCTGACAGAAAGAGATTTGAGCAGACAGGCCAGgtaggcgaattctttttgtgtagatgttaccgacctaaccatagcgccag Alignment from Spaln_nt2Genome ATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAG tcattctttccaatgtttgtagaaggacaatactttgatttattttctagATCTATGTAATTGACAGTGCTGACAGAAAGAGATTTGAGCAGACAGGCCAGgtaggcgaattctttttgtgtagatgttaccgacctaaccatagcgccag Alignment from Pairagon ATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAG tcattctttccaatgtttgtagaaggacaatactttgatttattttctagATCTATGTAATTGACAGTGCTGACAGAAAGAGATTTGAGCAGACAGGCCAGgtaggcgaattctttttgtgtagatgttaccgacctaaccatagcgccag Alignment from Exonerate_protein2genome ATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAG tcattctttccaatgtttgtagaaggacaatactttgatttattttctagATCTATGTAATTGACAGTGCTGACAGAAAGAGATTTGAGCAGACAGGCCAGgtaggcgaattctttttgtgtagatgttaccgacctaaccatagcgccag Alignment from Exonerate_coding2genome ATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAG tcattctttccaatgtttgtagaaggacaatactttgatttattttctagATCTATGTAATTGACAGTGCTGACAGAAAGAGATTTGAGCAGACAGGCCAGgtaggcgaattctttttgtgtagatgttaccgacctaaccatagcgccag Alignment from GeneWise ATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAG tcattctttccaatgtttgtagaaggacaatactttgatttattttctagATCTATGTAATTGACAGTGCTGACAGAAAGAGATTTGAGCAGACAGGCCAGgtaggcgaattctttttgtgtagatgttaccgacctaaccatagcgccag #### Asah2_ID6657_17 --> 0 - 0 Original Alignment GACACAGTAGCCAACATGAGCAGTGGTCCCGAGCCTCCATTCTTCAAAAATCTAATAGCTTCACTTATTCCTAATATTGCGGATAGAGCACCAATTGGCAAACATTTTGGGGATGTCTTGCAGCCAGCAAAACCTGAATACAGAGTG ctgtgttgctcatagttaaagttcaacttttttttttttttaattttcagGAGACAGTGTCCAACACCACTAGCGGCCCTGAGCCGCCATTCTTCAAAAATCTAATAGCGTCACTCATACCTAACATTGCAGATAGGGCACCGACTGGCAAACATTTTGGGGATGTTCTGCAGCCAGCAAAGCCTGAGTACAGAGTGgtactcaccaaggatgagtctctggatgccttatgaccctgcaccctgaa Alignment from CESAR GACACAGTAGCCAACATGAGCAGTGGTCCCGAGCCTCCATTCTTCAAAAATCTAATAGCTTCACTTATTCCTAATATTGCGGATAGAGCACCAATTGGCAAACATTTTGGGGATGTCTTGCAGCCAGCAAAACCTGAATACAGAGTG ctgtgttgctcatagttaaagttcaacttttttttttttttaattttcagGAGACAGTGTCCAACACCACTAGCGGCCCTGAGCCGCCATTCTTCAAAAATCTAATAGCGTCACTCATACCTAACATTGCAGATAGGGCACCGACTGGCAAACATTTTGGGGATGTTCTGCAGCCAGCAAAGCCTGAGTACAGAGTGgtactcaccaaggatgagtctctggatgccttatgaccctgcaccctgaa Alignment from Spaln_aa2Genome GACACAGTAGCCAACATGAGCAGTGGTCCCGAGCCTCCATTCTTCAAAAATCTAATAGCTTCACTTATTCCTAATATTGCGGATAGAGCACCAATTGGCAAACATTTTGGGGATGTCTTGCAGCCAGCAAAACCTGAATACAGAGTG ctgtgttgctcatagttaaagttcaacttttttttttttttaattttcagGAGACAGTGTCCAACACCACTAGCGGCCCTGAGCCGCCATTCTTCAAAAATCTAATAGCGTCACTCATACCTAACATTGCAGATAGGGCACCGACTGGCAAACATTTTGGGGATGTTCTGCAGCCAGCAAAGCCTGAGTACAGAGTGgtactcaccaaggatgagtctctggatgccttatgaccctgcaccctgaa Alignment from Spaln_nt2Genome GACACAGTAGCCAACATGAGCAGTGGTCCCGAGCCTCCATTCTTCAAAAATCTAATAGCTTCACTTATTCCTAATATTGCGGATAGAGCACCAATTGGCAAACATTTTGGGGATGTCTTGCAGCCAGCAAAACCTGAATACAGAGTG ctgtgttgctcatagttaaagttcaacttttttttttttttaattttcagGAGACAGTGTCCAACACCACTAGCGGCCCTGAGCCGCCATTCTTCAAAAATCTAATAGCGTCACTCATACCTAACATTGCAGATAGGGCACCGACTGGCAAACATTTTGGGGATGTTCTGCAGCCAGCAAAGCCTGAGTACAGAGTGgtactcaccaaggatgagtctctggatgccttatgaccctgcaccctgaa Alignment from Pairagon GACACAGTAGCCAACATGAGCAGTGGTCCCGAGCCTCCATTCTTCAAAAATCTAATAGCTTCACTTATTCCTAATATTGCGGATAGAGCACCAATTGGCAAACATTTTGGGGATGTCTTGCAGCCAGCAAAACCTGAATACAGAGTG ctgtgttgctcatagttaaagttcaacttttttttttttttaattttcagGAGACAGTGTCCAACACCACTAGCGGCCCTGAGCCGCCATTCTTCAAAAATCTAATAGCGTCACTCATACCTAACATTGCAGATAGGGCACCGACTGGCAAACATTTTGGGGATGTTCTGCAGCCAGCAAAGCCTGAGTACAGAGTGgtactcaccaaggatgagtctctggatgccttatgaccctgcaccctgaa Alignment from Exonerate_protein2genome GACACAGTAGCCAACATGAGCAGTGGTCCCGAGCCTCCATTCTTCAAAAATCTAATAGCTTCACTTATTCCTAATATTGCGGATAGAGCACCAATTGGCAAACATTTTGGGGATGTCTTGCAGCCAGCAAAACCTGAATACAGAGTG ctgtgttgctcatagttaaagttcaacttttttttttttttaattttcagGAGACAGTGTCCAACACCACTAGCGGCCCTGAGCCGCCATTCTTCAAAAATCTAATAGCGTCACTCATACCTAACATTGCAGATAGGGCACCGACTGGCAAACATTTTGGGGATGTTCTGCAGCCAGCAAAGCCTGAGTACAGAGTGgtactcaccaaggatgagtctctggatgccttatgaccctgcaccctgaa Alignment from Exonerate_coding2genome GACACAGTAGCCAACATGAGCAGTGGTCCCGAGCCTCCATTCTTCAAAAATCTAATAGCTTCACTTATTCCTAATATTGCGGATAGAGCACCAATTGGCAAACATTTTGGGGATGTCTTGCAGCCAGCAAAACCTGAATACAGAGTG ctgtgttgctcatagttaaagttcaacttttttttttttttaattttcagGAGACAGTGTCCAACACCACTAGCGGCCCTGAGCCGCCATTCTTCAAAAATCTAATAGCGTCACTCATACCTAACATTGCAGATAGGGCACCGACTGGCAAACATTTTGGGGATGTTCTGCAGCCAGCAAAGCCTGAGTACAGAGTGgtactcaccaaggatgagtctctggatgccttatgaccctgcaccctgaa Alignment from GeneWise GACACAGTAGCCAACATGAGCAGTGGTCCCGAGCCTCCATTCTTCAAAAATCTAATAGCTTCACTTATTCCTAATATTGCGGATAGAGCACCAATTGGCAAACATTTTGGGGATGTCTTGCAGCCAGCAAAACCTGAATACAGAGTG ctgtgttgctcatagttaaagttcaacttttttttttttttaattttcagGAGACAGTGTCCAACACCACTAGCGGCCCTGAGCCGCCATTCTTCAAAAATCTAATAGCGTCACTCATACCTAACATTGCAGATAGGGCACCGACTGGCAAACATTTTGGGGATGTTCTGCAGCCAGCAAAGCCTGAGTACAGAGTGgtactcaccaaggatgagtctctggatgccttatgaccctgcaccctgaa #### Asah2_ID6665_9 --> 0 - 0 Original Alignment CCTAGCATGTGCATGGCCAGCGGACCTGGACAAGACATGTTTGAGAGCACACACATTATAGGACGGATCATCTATCAGAAGGCCAAG acaattaccactacacccaccaagaatcggcctgtgtatgtctcttaaagCCTAGCATGTGCATGGCCAGCGGACCTGGACAGGACATGTTTAAGAGCACCCACATCATAGGACGGATCATCTATCAGAAGGCCAAGgtaaggctttcaatcatacaagcacaatgtgccaggaagtacattaagga Alignment from CESAR CCTAGCATGTGCATGGCCAGCGGACCTGGACAAGACATGTTTGAGAGCACACACATTATAGGACGGATCATCTATCAGAAGGCCAAG acaattaccactacacccaccaagaatcggcctgtgtatgtctcttaaagCCTAGCATGTGCATGGCCAGCGGACCTGGACAGGACATGTTTAAGAGCACCCACATCATAGGACGGATCATCTATCAGAAGGCCAAGgtaaggctttcaatcatacaagcacaatgtgccaggaagtacattaagga Alignment from Spaln_aa2Genome CCTAGCATGTGCATGGCCAGCGGACCTGGACAAGACATGTTTGAGAGCACACACATTATAGGACGGATCATCTATCAGAAGGCCAAG acaattaccactacacccaccaagaatcggcctgtgtatgtctcttaaagCCTAGCATGTGCATGGCCAGCGGACCTGGACAGGACATGTTTAAGAGCACCCACATCATAGGACGGATCATCTATCAGAAGGCCAAGgtaaggctttcaatcatacaagcacaatgtgccaggaagtacattaagga Alignment from Spaln_nt2Genome CCTAGCATGTGCATGGCCAGCGGACCTGGACAAGACATGTTTGAGAGCACACACATTATAGGACGGATCATCTATCAGAAGGCCAAG acaattaccactacacccaccaagaatcggcctgtgtatgtctcttaaagCCTAGCATGTGCATGGCCAGCGGACCTGGACAGGACATGTTTAAGAGCACCCACATCATAGGACGGATCATCTATCAGAAGGCCAAGgtaaggctttcaatcatacaagcacaatgtgccaggaagtacattaagga Alignment from Pairagon CCTAGCATGTGCATGGCCAGCGGACCTGGACAAGACATGTTTGAGAGCACACACATTATAGGACGGATCATCTATCAGAAGGCCAAG acaattaccactacacccaccaagaatcggcctgtgtatgtctcttaaagCCTAGCATGTGCATGGCCAGCGGACCTGGACAGGACATGTTTAAGAGCACCCACATCATAGGACGGATCATCTATCAGAAGGCCAAGgtaaggctttcaatcatacaagcacaatgtgccaggaagtacattaagga Alignment from Exonerate_protein2genome CCTAGCATGTGCATGGCCAGCGGACCTGGACAAGACATGTTTGAGAGCACACACATTATAGGACGGATCATCTATCAGAAGGCCAAG acaattaccactacacccaccaagaatcggcctgtgtatgtctcttaaagCCTAGCATGTGCATGGCCAGCGGACCTGGACAGGACATGTTTAAGAGCACCCACATCATAGGACGGATCATCTATCAGAAGGCCAAGgtaaggctttcaatcatacaagcacaatgtgccaggaagtacattaagga Alignment from Exonerate_coding2genome CCTAGCATGTGCATGGCCAGCGGACCTGGACAAGACATGTTTGAGAGCACACACATTATAGGACGGATCATCTATCAGAAGGCCAAG acaattaccactacacccaccaagaatcggcctgtgtatgtctcttaaagCCTAGCATGTGCATGGCCAGCGGACCTGGACAGGACATGTTTAAGAGCACCCACATCATAGGACGGATCATCTATCAGAAGGCCAAGgtaaggctttcaatcatacaagcacaatgtgccaggaagtacattaagga Alignment from GeneWise CCTAGCATGTGCATGGCCAGCGGACCTGGACAAGACATGTTTGAGAGCACACACATTATAGGACGGATCATCTATCAGAAGGCCAAG acaattaccactacacccaccaagaatcggcctgtgtatgtctcttaaagCCTAGCATGTGCATGGCCAGCGGACCTGGACAGGACATGTTTAAGAGCACCCACATCATAGGACGGATCATCTATCAGAAGGCCAAGgtaaggctttcaatcatacaagcacaatgtgccaggaagtacattaagga #### Atad1_ID6722_8 --> 0 - 2 Original Alignment GTGGATAGACACGTAGATCTTCTAGAAGTTGCCCAGGAAACTGATGGATTTTCAGGAAGTGACCTAAAAGAAATGTGTCGGGATGCCGCCCTCCTCTGTGTCAGGGAATATGTCAATTCTACATCAGAAGAGag aaccaggcgtgcaaatgcataacaattccagttgctataacgctttgtagGTCGATAGGCATATAGATCTCTTAGAAGTTGCACAGGAAACTGATGGATTTTCAGGTAGTGATCTGAAAGAAATGCGTCGGGATGCTGCCTTACTATGTGTTAGAGAGTATGTTAATTCCACACCAGAAGAGaggtgagttggatcatgggaaggaaggtctacgctacataaatagctagttg Alignment from CESAR GTGGATAGACACGTAGATCTTCTAGAAGTTGCCCAGGAAACTGATGGATTTTCAGGAAGTGACCTAAAAGAAATGTGTCGGGATGCCGCCCTCCTCTGTGTCAGGGAATATGTCAATTCTACATCAGAAGAGag aaccaggcgtgcaaatgcataacaattccagttgctataacgctttgtagGTCGATAGGCATATAGATCTCTTAGAAGTTGCACAGGAAACTGATGGATTTTCAGGTAGTGATCTGAAAGAAATGCGTCGGGATGCTGCCTTACTATGTGTTAGAGAGTATGTTAATTCCACACCAGAAGAGaggtgagttggatcatgggaaggaaggtctacgctacataaatagctagttg Alignment from Spaln_aa2Genome GTGGATAGACACGTAGATCTTCTAGAAGTTGCCCAGGAAACTGATGGATTTTCAGGAAGTGACCTAAAAGAAATGTGTCGGGATGCCGCCCTCCTCTGTGTCAGGGAATATGTCAATTCTACATCAGAAGAGAG aaccaggcgtgcaaatgcataacaattccagttgctataacgctttgtagGTCGATAGGCATATAGATCTCTTAGAAGTTGCACAGGAAACTGATGGATTTTCAGGTAGTGATCTGAAAGAAATGCGTCGGGATGCTGCCTTACTATGTGTTAGAGAGTATGTTAATTCCACACCAGAAGAGAGgtgagttggatcatgggaaggaaggtctacgctacataaatagctagttg Alignment from Spaln_nt2Genome GTGGATAGACACGTAGATCTTCTAGAAGTTGCCCAGGAAACTGATGGATTTTCAGGAAGTGACCTAAAAGAAATGTGTCGGGATGCCGCCCTCCTCTGTGTCAGGGAATATGTCAATTCTACATCAGAAGAGAG aaccaggcgtgcaaatgcataacaattccagttgctataacgctttgtagGTCGATAGGCATATAGATCTCTTAGAAGTTGCACAGGAAACTGATGGATTTTCAGGTAGTGATCTGAAAGAAATGCGTCGGGATGCTGCCTTACTATGTGTTAGAGAGTATGTTAATTCCACACCAGAAGAGAGgtgagttggatcatgggaaggaaggtctacgctacataaatagctagttg Alignment from Pairagon GTGGATAGACACGTAGATCTTCTAGAAGTTGCCCAGGAAACTGATGGATTTTCAGGAAGTGACCTAAAAGAAATGTGTCGGGATGCCGCCCTCCTCTGTGTCAGGGAATATGTCAATTCTACATCAGAAGAGAG aaccaggcgtgcaaatgcataacaattccagttgctataacgctttgtagGTCGATAGGCATATAGATCTCTTAGAAGTTGCACAGGAAACTGATGGATTTTCAGGTAGTGATCTGAAAGAAATGCGTCGGGATGCTGCCTTACTATGTGTTAGAGAGTATGTTAATTCCACACCAGAAGAGAGgtgagttggatcatgggaaggaaggtctacgctacataaatagctagttg Alignment from Exonerate_protein2genome GTGGATAGACACGTAGATCTTCTAGAAGTTGCCCAGGAAACTGATGGATTTTCAGGAAGTGACCTAAAAGAAATGTGTCGGGATGCCGCCCTCCTCTGTGTCAGGGAATATGTCAATTCTACATCAGAAGAGAG aaccaggcgtgcaaatgcataacaattccagttgctataacgctttgtagGTCGATAGGCATATAGATCTCTTAGAAGTTGCACAGGAAACTGATGGATTTTCAGGTAGTGATCTGAAAGAAATGCGTCGGGATGCTGCCTTACTATGTGTTAGAGAGTATGTTAATTCCACACCAGAAGAGAGgtgagttggatcatgggaaggaaggtctacgctacataaatagctagttg Alignment from Exonerate_coding2genome GTGGATAGACACGTAGATCTTCTAGAAGTTGCCCAGGAAACTGATGGATTTTCAGGAAGTGACCTAAAAGAAATGTGTCGGGATGCCGCCCTCCTCTGTGTCAGGGAATATGTCAATTCTACATCAGAAGAGAG aaccaggcgtgcaaatgcataacaattccagttgctataacgctttgtagGTCGATAGGCATATAGATCTCTTAGAAGTTGCACAGGAAACTGATGGATTTTCAGGTAGTGATCTGAAAGAAATGCGTCGGGATGCTGCCTTACTATGTGTTAGAGAGTATGTTAATTCCACACCAGAAGAGAGgtgagttggatcatgggaaggaaggtctacgctacataaatagctagttg Alignment from GeneWise GTGGATAGACACGTAGATCTTCTAGAAGTTGCCCAGGAAACTGATGGATTTTCAGGAAGTGACCTAAAAGAAATGTGTCGGGATGCCGCCCTCCTCTGTGTCAGGGAATATGTCAATTCTACATCAGAAGAGAG aaccaggcgtgcaaatgcataacaattccagttgctataacgctttgtagGTCGATAGGCATATAGATCTCTTAGAAGTTGCACAGGAAACTGATGGATTTTCAGGTAGTGATCTGAAAGAAATGCGTCGGGATGCTGCCTTACTATGTGTTAGAGAGTATGTTAATTCCACACCAGAAGAGAGgtgagttggatcatgggaaggaaggtctacgctacataaatagctagttg #### Atad1_ID6728_2 --> 0 - 0 Original Alignment GCGGAAAAACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCAGAATATGAAATGAGTATTGCTGCTCATCTAGTAGACCCTCTTAATATGCAT aggaggatactttggtttggattctgcccccggcctgttctctcctccagGCAGAAATACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCGGAATATGAAATGAGTATTGCTGCTCATCTAGTAGACCCTCATAATATGCATgtcagcttccctaatatttccttctgaggagttgggcaaataacaaatta Alignment from CESAR GCGGAAAAACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCAGAATATGAAATGAGTATTGCTGCTCATCTAGTAGACCCTCTTAATATGCAT aggaggatactttggtttggattctgcccccggcctgttctctcctccagGCAGAAATACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCGGAATATGAAATGAGTATTGCTGCTCATCTAGTAGACCCTCATAATATGCATgtcagcttccctaatatttccttctgaggagttgggcaaataacaaatta Alignment from Spaln_aa2Genome GCGGAAAAACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCAGAATATGAAATGAGTATTGCTGCTCATCTAGTAGACCCTCTTAATATGCAT aggaggatactttggtttggattctgcccccggcctgttctctcctccagGCAGAAATACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCGGAATATGAAATGAGTATTGCTGCTCATCTAGTAGACCCTCATAATATGCATgtcagcttccctaatatttccttctgaggagttgggcaaataacaaatta Alignment from Spaln_nt2Genome GCGGAAAAACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCAGAATATGAAATGAGTATTGCTGCTCATCTAGTAGACCCTCTTAATATGCAT aggaggatactttggtttggattctgcccccggcctgttctctcctccagGCAGAAATACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCGGAATATGAAATGAGTATTGCTGCTCATCTAGTAGACCCTCATAATATGCATgtcagcttccctaatatttccttctgaggagttgggcaaataacaaatta Alignment from Pairagon GCGGAAAAACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCAGAATATGAAATGAGTATTGCTGCTCATCTAGTAGACCCTCTTAATATGCAT aggaggatactttggtttggattctgcccccggcctgttctctcctccagGCAGAAATACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCGGAATATGAAATGAGTATTGCTGCTCATCTAGTAGACCCTCATAATATGCATgtcagcttccctaatatttccttctgaggagttgggcaaataacaaatta Alignment from Exonerate_protein2genome GCGGAAAAACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCAGAATATGAAATGAGTATTGCTGCTCATCTAGTAGACCCTCTTAATATGCAT aggaggatactttggtttggattctgcccccggcctgttctctcctccagGCAGAAATACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCGGAATATGAAATGAGTATTGCTGCTCATCTAGTAGACCCTCATAATATGCATgtcagcttccctaatatttccttctgaggagttgggcaaataacaaatta Alignment from Exonerate_coding2genome GCGGAAAAACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCAGAATATGAAATGAGTATTGCTGCTCATCTAGTAGACCCTCTTAATATGCAT aggaggatactttggtttggattctgcccccggcctgttctctcctccagGCAGAAATACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCGGAATATGAAATGAGTATTGCTGCTCATCTAGTAGACCCTCATAATATGCATgtcagcttccctaatatttccttctgaggagttgggcaaataacaaatta Alignment from GeneWise GCGGAAAAACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCAGAATATGAAATGAGTATTGCTGCTCATCTAGTAGACCCTCTTAATATGCAT aggaggatactttggtttggattctgcccccggcctgttctctcctccagGCAGAAATACTGATGAAGCAAATTGGTGTGAAAAATGTGAAGCTTTCGGAATATGAAATGAGTATTGCTGCTCATCTAGTAGACCCTCATAATATGCATgtcagcttccctaatatttccttctgaggagttgggcaaataacaaatta #### Atl3_ID2161_3 --> 0 - 0 Original Alignment AAGGAAGGTGGTCATTCAGACTGGTTGGGTGACCCAGAAGAACCTCTGACAGGATTTTCATGGCGAGGAGGCTCTGATCCAGAAACTACTGGGATTCAGATTTGGAGTGAAGTTTTCACTGTGAAGAAGCCATGTGGAAAAAAG cattctgcgtgcagctcagtatgttatccacccatcttctcttcatctagAGAGAGGGTGGGCATTCAGACTGGTTGGGTGACCCAGAAGAGCCTCTAATAGGATTTTCATGGCATGGAGGGTCTGACCCAGAGACACCAGGGATTCAAATTTGGAGTGAAGTTTTTACAGCAAAGAAGCCATGTGGAAGAAAGgtaggcaagtttgatagaaaaaaatctagatttgatatgagaatgaaaag Alignment from CESAR AAGGAAGGTGGTCATTCAGACTGGTTGGGTGACCCAGAAGAACCTCTGACAGGATTTTCATGGCGAGGAGGCTCTGATCCAGAAACTACTGGGATTCAGATTTGGAGTGAAGTTTTCACTGTGAAGAAGCCATGTGGAAAAAAG cattctgcgtgcagctcagtatgttatccacccatcttctcttcatctagAGAGAGGGTGGGCATTCAGACTGGTTGGGTGACCCAGAAGAGCCTCTAATAGGATTTTCATGGCATGGAGGGTCTGACCCAGAGACACCAGGGATTCAAATTTGGAGTGAAGTTTTTACAGCAAAGAAGCCATGTGGAAGAAAGgtaggcaagtttgatagaaaaaaatctagatttgatatgagaatgaaaag Alignment from Spaln_aa2Genome AAGGAAGGTGGTCATTCAGACTGGTTGGGTGACCCAGAAGAACCTCTGACAGGATTTTCATGGCGAGGAGGCTCTGATCCAGAAACTACTGGGATTCAGATTTGGAGTGAAGTTTTCACTGTGAAGAAGCCATGTGGAAAAAAG cattctgcgtgcagctcagtatgttatccacccatcttctcttcatctagAGAGAGGGTGGGCATTCAGACTGGTTGGGTGACCCAGAAGAGCCTCTAATAGGATTTTCATGGCATGGAGGGTCTGACCCAGAGACACCAGGGATTCAAATTTGGAGTGAAGTTTTTACAGCAAAGAAGCCATGTGGAAGAAAGgtaggcaagtttgatagaaaaaaatctagatttgatatgagaatgaaaag Alignment from Spaln_nt2Genome AAGGAAGGTGGTCATTCAGACTGGTTGGGTGACCCAGAAGAACCTCTGACAGGATTTTCATGGCGAGGAGGCTCTGATCCAGAAACTACTGGGATTCAGATTTGGAGTGAAGTTTTCACTGTGAAGAAGCCATGTGGAAAAAAG cattctgcgtgcagctcagtatgttatccacccatcttctcttcatctagAGAGAGGGTGGGCATTCAGACTGGTTGGGTGACCCAGAAGAGCCTCTAATAGGATTTTCATGGCATGGAGGGTCTGACCCAGAGACACCAGGGATTCAAATTTGGAGTGAAGTTTTTACAGCAAAGAAGCCATGTGGAAGAAAGgtaggcaagtttgatagaaaaaaatctagatttgatatgagaatgaaaag Alignment from Pairagon AAGGAAGGTGGTCATTCAGACTGGTTGGGTGACCCAGAAGAACCTCTGACAGGATTTTCATGGCGAGGAGGCTCTGATCCAGAAACTACTGGGATTCAGATTTGGAGTGAAGTTTTCACTGTGAAGAAGCCATGTGGAAAAAAG cattctgcgtgcagctcagtatgttatccacccatcttctcttcatctagAGAGAGGGTGGGCATTCAGACTGGTTGGGTGACCCAGAAGAGCCTCTAATAGGATTTTCATGGCATGGAGGGTCTGACCCAGAGACACCAGGGATTCAAATTTGGAGTGAAGTTTTTACAGCAAAGAAGCCATGTGGAAGAAAGgtaggcaagtttgatagaaaaaaatctagatttgatatgagaatgaaaag Alignment from Exonerate_protein2genome AAGGAAGGTGGTCATTCAGACTGGTTGGGTGACCCAGAAGAACCTCTGACAGGATTTTCATGGCGAGGAGGCTCTGATCCAGAAACTACTGGGATTCAGATTTGGAGTGAAGTTTTCACTGTGAAGAAGCCATGTGGAAAAAAG cattctgcgtgcagctcagtatgttatccacccatcttctcttcatctagAGAGAGGGTGGGCATTCAGACTGGTTGGGTGACCCAGAAGAGCCTCTAATAGGATTTTCATGGCATGGAGGGTCTGACCCAGAGACACCAGGGATTCAAATTTGGAGTGAAGTTTTTACAGCAAAGAAGCCATGTGGAAGAAAGgtaggcaagtttgatagaaaaaaatctagatttgatatgagaatgaaaag Alignment from Exonerate_coding2genome AAGGAAGGTGGTCATTCAGACTGGTTGGGTGACCCAGAAGAACCTCTGACAGGATTTTCATGGCGAGGAGGCTCTGATCCAGAAACTACTGGGATTCAGATTTGGAGTGAAGTTTTCACTGTGAAGAAGCCATGTGGAAAAAAG cattctgcgtgcagctcagtatgttatccacccatcttctcttcatctagAGAGAGGGTGGGCATTCAGACTGGTTGGGTGACCCAGAAGAGCCTCTAATAGGATTTTCATGGCATGGAGGGTCTGACCCAGAGACACCAGGGATTCAAATTTGGAGTGAAGTTTTTACAGCAAAGAAGCCATGTGGAAGAAAGgtaggcaagtttgatagaaaaaaatctagatttgatatgagaatgaaaag Alignment from GeneWise AAGGAAGGTGGTCATTCAGACTGGTTGGGTGACCCAGAAGAACCTCTGACAGGATTTTCATGGCGAGGAGGCTCTGATCCAGAAACTACTGGGATTCAGATTTGGAGTGAAGTTTTCACTGTGAAGAAGCCATGTGGAAAAAAG cattctgcgtgcagctcagtatgttatccacccatcttctcttcatctagAGAGAGGGTGGGCATTCAGACTGGTTGGGTGACCCAGAAGAGCCTCTAATAGGATTTTCATGGCATGGAGGGTCTGACCCAGAGACACCAGGGATTCAAATTTGGAGTGAAGTTTTTACAGCAAAGAAGCCATGTGGAAGAAAGgtaggcaagtttgatagaaaaaaatctagatttgatatgagaatgaaaag #### Atl3_ID2164_6 --> 0 - 0 Original Alignment CTCTTCACAGAATATGGCCGCCTGGCAATGGATGAAATTTTCCAAAAACCTTTTCAG tgttaaataagatgatgagagctctcaacaccctttatccttccacacagCTCTTTACTGAATATGGCCGC---ACAATGGATGAAATATTTCAGAAACCTTTTCAGgtgatgtgctatgcagtgtcttccccgtctcccttttgttggtcttatat Alignment from CESAR CTCTTCACAGAATATGGCCGCCTGGCAATGGATGAAATTTTCCAAAAACCTTTTCAG tgttaaataagatgatgagagctctcaacaccctttatccttccacacagCTCTTTACTGAATATGGCCGC---ACAATGGATGAAATATTTCAGAAACCTTTTCAGgtgatgtgctatgcagtgtcttccccgtctcccttttgttggtcttatat Alignment from Spaln_aa2Genome CTCTTCACAGAATATGGCCGCCTGGCAATGGATGAAATTTTCCAAAAACCTTTTCAG tgttaaataagatgatgagagctctcaacaccctttatccttccacacagCTCTTTACTGAATATGGCCGC---ACAATGGATGAAATATTTCAGAAACCTTTTCAGgtgatgtgctatgcagtgtcttccccgtctcccttttgttggtcttatat Alignment from Spaln_nt2Genome CTCTTCACAGAATATGGCCGCCTGGCAATGGATGAAATTTTCCAAAAACCTTTTCAG tgttaaataagatgatgagagctctcaacaccctttatccttccacacagCTCTTTACTGAATATGGCCGC---ACAATGGATGAAATATTTCAGAAACCTTTTCAGgtgatgtgctatgcagtgtcttccccgtctcccttttgttggtcttatat Alignment from Pairagon CTCTTCACAGAATATGGCCGCCTGGCAATGGATGAAATTTTCCAAAAACCTTTTCAG tgttaaataagatgatgagagctctcaacaccctttatccttccacacagCTCTTTACTGAATATGGCCGC---ACAATGGATGAAATATTTCAGAAACCTTTTCAGgtgatgtgctatgcagtgtcttccccgtctcccttttgttggtcttatat Alignment from Exonerate_protein2genome CTCTTCACAGAATATGGCCGCCTGGCAATGGATGAAATTTTCCAAAAACCTTTTCAG tgttaaataagatgatgagagctctcaacaccctttatccttccacacagCTCTTTACTGAATATGGCCGC---ACAATGGATGAAATATTTCAGAAACCTTTTCAGgtgatgtgctatgcagtgtcttccccgtctcccttttgttggtcttatat Alignment from Exonerate_coding2genome tgttaaataagatgatgagagctctcaacaccctttatccttccacacagctctttactgaatatggccgcacaatggatgaaatatttcagaaaccttttcaggtgatgtgctatgcagtgtcttccccgtctcccttttgttggtcttatat Alignment from GeneWise CTCTTCACAGAATATGGCCGCCTGGCAATGGATGAAATTTTCCAAAAACCTTTTCAG tgttaaataagatgatgagagctctcaacaccctttatccttccacacagCTCTTTACTGAATATGGCCGC---ACAATGGATGAAATATTTCAGAAACCTTTTCAGgtgatgtgctatgcagtgtcttccccgtctcccttttgttggtcttatat #### Atl3_ID2172_12 --> 0 - 0 Original Alignment ATTTGTGGGGGAGAGAAACCTTATTTGTCTCCAGATATTTTAGAAGAGAAGCACCTAGAATTCAAACAACTTGCT---CTGGACCACTTTAAGAAGATCAAAAAGATGGGTGGGAAGGATTTCAGCTTCCGTTACCAGCAGGAACTGGAGGAGGAAATCAAAGAACTGTATGAGAACTTCTGCAAGCACAACGGCAGCAAGAATGTCTTCAGCACCTTCCGAACCCCTGCAGTTCTGTTCACAGGCATAGCAGCATTGTACATAGCCTCGGGCTTCACGGGCTTCATTGGGCTTGAGGTTGTGGCCCAGCTGTTCAACTGTATGGTTGGACTGCTCTTAATAGCACTCCTTACCTGGGGGTACATCAGATATTCCGGGCAGTATCGTGAGCTGGGTGGAGCCATTGACTCCGGTGCAGCATATGTGTTAGAGCAG tttacttgggcagtataagacttcacaagacccttgtcgcttgtccccagATTTGTGGAGGAGAGAAACCGTGTTTGCCCCCAGATATCTTACAAGAGAAACATCTAGAATTCAAACAACTTGCTGCCTTAGACCATTTCAAGCAGATCAAAAGAATGGGTGGAGAGGATTACAGCTTCTGCTACCAGCAGGAACTAGAGGAGGAAATAAAACAACTATATGAGAATTTCTGCCAGCGCAATGGGACCAAGAATGTATTCAGCAGCTTCCGGACCCCAGCAGTTCTGTTCGCAACCATTGCCGCATTGTACATAGCTGCAGGCTTCGCAGGCTACATTGGACTTGAGATTGTGGCTCAGTTATTCAACTGCATGGTAAAATTGCTTTTGATAGCACTCCTCACATGTGGATACATCAGATACTCTGGACAGTATTGTGAGCTAGGCGCCACCATTGATTCAGGTGCAGCATATGTGTTAAAACAAgtaagtaatgctgactgagactggggctgagtctagtctaaggtcataga Alignment from CESAR ATTTGTGGGGGAGAGAAACCTTATTTGTCTCCAGATATTTTAGAAGAGAAGCACCTAGAATTCAAACAACTTGCT---CTGGACCACTTTAAGAAGATCAAAAAGATGGGTGGGAAGGATTTCAGCTTCCGTTACCAGCAGGAACTGGAGGAGGAAATCAAAGAACTGTATGAGAACTTCTGCAAGCACAACGGCAGCAAGAATGTCTTCAGCACCTTCCGAACCCCTGCAGTTCTGTTCACAGGCATAGCAGCATTGTACATAGCCTCGGGCTTCACGGGCTTCATTGGGCTTGAGGTTGTGGCCCAGCTGTTCAACTGTATGGTTGGACTGCTCTTAATAGCACTCCTTACCTGGGGGTACATCAGATATTCCGGGCAGTATCGTGAGCTGGGTGGAGCCATTGACTCCGGTGCAGCATATGTGTTAGAGCAG tttacttgggcagtataagacttcacaagacccttgtcgcttgtccccagATTTGTGGAGGAGAGAAACCGTGTTTGCCCCCAGATATCTTACAAGAGAAACATCTAGAATTCAAACAACTTGCTGCCTTAGACCATTTCAAGCAGATCAAAAGAATGGGTGGAGAGGATTACAGCTTCTGCTACCAGCAGGAACTAGAGGAGGAAATAAAACAACTATATGAGAATTTCTGCCAGCGCAATGGGACCAAGAATGTATTCAGCAGCTTCCGGACCCCAGCAGTTCTGTTCGCAACCATTGCCGCATTGTACATAGCTGCAGGCTTCGCAGGCTACATTGGACTTGAGATTGTGGCTCAGTTATTCAACTGCATGGTAAAATTGCTTTTGATAGCACTCCTCACATGTGGATACATCAGATACTCTGGACAGTATTGTGAGCTAGGCGCCACCATTGATTCAGGTGCAGCATATGTGTTAAAACAAgtaagtaatgctgactgagactggggctgagtctagtctaaggtcataga Alignment from Spaln_aa2Genome ATTTGTGGGGGAGAGAAACCTTATTTGTCTCCAGATATTTTAGAAGAGAAGCACCTAGAATTCAAACAACTT---GCTCTGGACCACTTTAAGAAGATCAAAAAGATGGGTGGGAAGGATTTCAGCTTCCGTTACCAGCAGGAACTGGAGGAGGAAATCAAAGAACTGTATGAGAACTTCTGCAAGCACAACGGCAGCAAGAATGTCTTCAGCACCTTCCGAACCCCTGCAGTTCTGTTCACAGGCATAGCAGCATTGTACATAGCCTCGGGCTTCACGGGCTTCATTGGGCTTGAGGTTGTGGCCCAGCTGTTCAACTGTATGGTTGGACTGCTCTTAATAGCACTCCTTACCTGGGGGTACATCAGATATTCCGGGCAGTATCGTGAGCTGGGTGGAGCCATTGACTCCGGTGCAGCATATGTGTTAGAGCAG tttacttgggcagtataagacttcacaagacccttgtcgcttgtccccagATTTGTGGAGGAGAGAAACCGTGTTTGCCCCCAGATATCTTACAAGAGAAACATCTAGAATTCAAACAACTTGCTGCCTTAGACCATTTCAAGCAGATCAAAAGAATGGGTGGAGAGGATTACAGCTTCTGCTACCAGCAGGAACTAGAGGAGGAAATAAAACAACTATATGAGAATTTCTGCCAGCGCAATGGGACCAAGAATGTATTCAGCAGCTTCCGGACCCCAGCAGTTCTGTTCGCAACCATTGCCGCATTGTACATAGCTGCAGGCTTCGCAGGCTACATTGGACTTGAGATTGTGGCTCAGTTATTCAACTGCATGGTAAAATTGCTTTTGATAGCACTCCTCACATGTGGATACATCAGATACTCTGGACAGTATTGTGAGCTAGGCGCCACCATTGATTCAGGTGCAGCATATGTGTTAAAACAAgtaagtaatgctgactgagactggggctgagtctagtctaaggtcataga Alignment from Spaln_nt2Genome ATTTGTGGGGGAGAGAAACCTTATTTGTCTCCAGATATTTTAGAAGAGAAGCACCTAGAATTCAAACAACTTGCTC---TGGACCACTTTAAGAAGATCAAAAAGATGGGTGGGAAGGATTTCAGCTTCCGTTACCAGCAGGAACTGGAGGAGGAAATCAAAGAACTGTATGAGAACTTCTGCAAGCACAACGGCAGCAAGAATGTCTTCAGCACCTTCCGAACCCCTGCAGTTCTGTTCACAGGCATAGCAGCATTGTACATAGCCTCGGGCTTCACGGGCTTCATTGGGCTTGAGGTTGTGGCCCAGCTGTTCAACTGTATGGTTGGACTGCTCTTAATAGCACTCCTTACCTGGGGGTACATCAGATATTCCGGGCAGTATCGTGAGCTGGGTGGAGCCATTGACTCCGGTGCAGCATATGTGTTAGAGCAG tttacttgggcagtataagacttcacaagacccttgtcgcttgtccccagATTTGTGGAGGAGAGAAACCGTGTTTGCCCCCAGATATCTTACAAGAGAAACATCTAGAATTCAAACAACTTGCTGCCTTAGACCATTTCAAGCAGATCAAAAGAATGGGTGGAGAGGATTACAGCTTCTGCTACCAGCAGGAACTAGAGGAGGAAATAAAACAACTATATGAGAATTTCTGCCAGCGCAATGGGACCAAGAATGTATTCAGCAGCTTCCGGACCCCAGCAGTTCTGTTCGCAACCATTGCCGCATTGTACATAGCTGCAGGCTTCGCAGGCTACATTGGACTTGAGATTGTGGCTCAGTTATTCAACTGCATGGTAAAATTGCTTTTGATAGCACTCCTCACATGTGGATACATCAGATACTCTGGACAGTATTGTGAGCTAGGCGCCACCATTGATTCAGGTGCAGCATATGTGTTAAAACAAgtaagtaatgctgactgagactggggctgagtctagtctaaggtcataga Alignment from Pairagon ATTTGTGGGGGAGAGAAACCTTATTTGTCTCCAGATATTTTAGAAGAGAAGCACCTAGAATTCAAACAACTTGCT---CTGGACCACTTTAAGAAGATCAAAAAGATGGGTGGGAAGGATTTCAGCTTCCGTTACCAGCAGGAACTGGAGGAGGAAATCAAAGAACTGTATGAGAACTTCTGCAAGCACAACGGCAGCAAGAATGTCTTCAGCACCTTCCGAACCCCTGCAGTTCTGTTCACAGGCATAGCAGCATTGTACATAGCCTCGGGCTTCACGGGCTTCATTGGGCTTGAGGTTGTGGCCCAGCTGTTCAACTGTATGGTTGGACTGCTCTTAATAGCACTCCTTACCTGGGGGTACATCAGATATTCCGGGCAGTATCGTGAGCTGGGTGGAGCCATTGACTCCGGTGCAGCATATGTGTTAGAGCAG tttacttgggcagtataagacttcacaagacccttgtcgcttgtccccagATTTGTGGAGGAGAGAAACCGTGTTTGCCCCCAGATATCTTACAAGAGAAACATCTAGAATTCAAACAACTTGCTGCCTTAGACCATTTCAAGCAGATCAAAAGAATGGGTGGAGAGGATTACAGCTTCTGCTACCAGCAGGAACTAGAGGAGGAAATAAAACAACTATATGAGAATTTCTGCCAGCGCAATGGGACCAAGAATGTATTCAGCAGCTTCCGGACCCCAGCAGTTCTGTTCGCAACCATTGCCGCATTGTACATAGCTGCAGGCTTCGCAGGCTACATTGGACTTGAGATTGTGGCTCAGTTATTCAACTGCATGGTAAAATTGCTTTTGATAGCACTCCTCACATGTGGATACATCAGATACTCTGGACAGTATTGTGAGCTAGGCGCCACCATTGATTCAGGTGCAGCATATGTGTTAAAACAAgtaagtaatgctgactgagactggggctgagtctagtctaaggtcataga Alignment from Exonerate_protein2genome ATTTGTGGGGGAGAGAAACCTTATTTGTCTCCAGATATTTTAGAAGAGAAGCACCTAGAATTCAAACAACTT---GCTCTGGACCACTTTAAGAAGATCAAAAAGATGGGTGGGAAGGATTTCAGCTTCCGTTACCAGCAGGAACTGGAGGAGGAAATCAAAGAACTGTATGAGAACTTCTGCAAGCACAACGGCAGCAAGAATGTCTTCAGCACCTTCCGAACCCCTGCAGTTCTGTTCACAGGCATAGCAGCATTGTACATAGCCTCGGGCTTCACGGGCTTCATTGGGCTTGAGGTTGTGGCCCAGCTGTTCAACTGTATGGTTGGACTGCTCTTAATAGCACTCCTTACCTGGGGGTACATCAGATATTCCGGGCAGTATCGTGAGCTGGGTGGAGCCATTGACTCCGGTGCAGCATATGTGTTAGAGCAG tttacttgggcagtataagacttcacaagacccttgtcgcttgtccccagATTTGTGGAGGAGAGAAACCGTGTTTGCCCCCAGATATCTTACAAGAGAAACATCTAGAATTCAAACAACTTGCTGCCTTAGACCATTTCAAGCAGATCAAAAGAATGGGTGGAGAGGATTACAGCTTCTGCTACCAGCAGGAACTAGAGGAGGAAATAAAACAACTATATGAGAATTTCTGCCAGCGCAATGGGACCAAGAATGTATTCAGCAGCTTCCGGACCCCAGCAGTTCTGTTCGCAACCATTGCCGCATTGTACATAGCTGCAGGCTTCGCAGGCTACATTGGACTTGAGATTGTGGCTCAGTTATTCAACTGCATGGTAAAATTGCTTTTGATAGCACTCCTCACATGTGGATACATCAGATACTCTGGACAGTATTGTGAGCTAGGCGCCACCATTGATTCAGGTGCAGCATATGTGTTAAAACAAgtaagtaatgctgactgagactggggctgagtctagtctaaggtcataga Alignment from Exonerate_coding2genome ATTTGTGGGGGAGAGAAACCTTATTTGTCTCCAGATATTTTAGAAGAGAAGCACCTAGAATTCAAACAACTT---GCTCTGGACCACTTTAAGAAGATCAAAAAGATGGGTGGGAAGGATTTCAGCTTCCGTTACCAGCAGGAACTGGAGGAGGAAATCAAAGAACTGTATGAGAACTTCTGCAAGCACAACGGCAGCAAGAATGTCTTCAGCACCTTCCGAACCCCTGCAGTTCTGTTCACAGGCATAGCAGCATTGTACATAGCCTCGGGCTTCACGGGCTTCATTGGGCTTGAGGTTGTGGCCCAGCTGTTCAACTGTATGGTTGGACTGCTCTTAATAGCACTCCTTACCTGGGGGTACATCAGATATTCCGGGCAGTATCGTGAGCTGGGTGGAGCCATTGACTCCGGTGCAGCATATGTGTTAGAGCAG tttacttgggcagtataagacttcacaagacccttgtcgcttgtccccagATTTGTGGAGGAGAGAAACCGTGTTTGCCCCCAGATATCTTACAAGAGAAACATCTAGAATTCAAACAACTTGCTGCCTTAGACCATTTCAAGCAGATCAAAAGAATGGGTGGAGAGGATTACAGCTTCTGCTACCAGCAGGAACTAGAGGAGGAAATAAAACAACTATATGAGAATTTCTGCCAGCGCAATGGGACCAAGAATGTATTCAGCAGCTTCCGGACCCCAGCAGTTCTGTTCGCAACCATTGCCGCATTGTACATAGCTGCAGGCTTCGCAGGCTACATTGGACTTGAGATTGTGGCTCAGTTATTCAACTGCATGGTAAAATTGCTTTTGATAGCACTCCTCACATGTGGATACATCAGATACTCTGGACAGTATTGTGAGCTAGGCGCCACCATTGATTCAGGTGCAGCATATGTGTTAAAACAAgtaagtaatgctgactgagactggggctgagtctagtctaaggtcataga Alignment from GeneWise ATTTGTGGGGGAGAGAAACCTTATTTGTCTCCAGATATTTTAGAAGAGAAGCACCTAGAATTCAAACAACTTGCT---CTGGACCACTTTAAGAAGATCAAAAAGATGGGTGGGAAGGATTTCAGCTTCCGTTACCAGCAGGAACTGGAGGAGGAAATCAAAGAACTGTATGAGAACTTCTGCAAGCACAACGGCAGCAAGAATGTCTTCAGCACCTTCCGAACCCCTGCAGTTCTGTTCACAGGCATAGCAGCATTGTACATAGCCTCGGGCTTCACGGGCTTCATTGGGCTTGAGGTTGTGGCCCAGCTGTTCAACTGTATGGTTGGACTGCTCTTAATAGCACTCCTTACCTGGGGGTACATCAGATATTCCGGGCAGTATCGTGAGCTGGGTGGAGCCATTGACTCCGGTGCAGCATATGTGTTAGAGCAG tttacttgggcagtataagacttcacaagacccttgtcgcttgtccccagATTTGTGGAGGAGAGAAACCGTGTTTGCCCCCAGATATCTTACAAGAGAAACATCTAGAATTCAAACAACTTGCTGCCTTAGACCATTTCAAGCAGATCAAAAGAATGGGTGGAGAGGATTACAGCTTCTGCTACCAGCAGGAACTAGAGGAGGAAATAAAACAACTATATGAGAATTTCTGCCAGCGCAATGGGACCAAGAATGTATTCAGCAGCTTCCGGACCCCAGCAGTTCTGTTCGCAACCATTGCCGCATTGTACATAGCTGCAGGCTTCGCAGGCTACATTGGACTTGAGATTGTGGCTCAGTTATTCAACTGCATGGTAAAATTGCTTTTGATAGCACTCCTCACATGTGGATACATCAGATACTCTGGACAGTATTGTGAGCTAGGCGCCACCATTGATTCAGGTGCAGCATATGTGTTAAAACAAgtaagtaatgctgactgagactggggctgagtctagtctaaggtcataga #### Atrnl1_ID12431_4 --> 1 - 2 Original Alignment tGGCTTGATCGTTCCTGAAGTGAGGGGTAACGAGACCGTGCCTGAGGTGGTCACGACGTCTGGCTACGCGCTGCTCCACTTTTTCAGCGATGCTGCATATAACCTAACTGGCTTCAACATTTTTTATtc catgaggacagtatattttaatattttataacggtggctctcccttccagtGGTCTGGTAGTCCCTGAGGTGCGGGGCAATGAGACTGTGCCTGAGGTGGTCACAACATCTGGATATGCACTGCTTCACTTTTTTAGTGATGCTGCATATAACCTAACTGGCTTAAACATTTTTTATtcgtaagagatgttacacattagaagagcacatgtaaagtcagggtatcatg Alignment from CESAR tGGCTTGATCGTTCCTGAAGTGAGGGGTAACGAGACCGTGCCTGAGGTGGTCACGACGTCTGGCTACGCGCTGCTCCACTTTTTCAGCGATGCTGCATATAACCTAACTGGCTTCAACATTTTTTATtc catgaggacagtatattttaatattttataacggtggctctcccttccagtGGTCTGGTAGTCCCTGAGGTGCGGGGCAATGAGACTGTGCCTGAGGTGGTCACAACATCTGGATATGCACTGCTTCACTTTTTTAGTGATGCTGCATATAACCTAACTGGCTTAAACATTTTTTATtcgtaagagatgttacacattagaagagcacatgtaaagtcagggtatcatg Alignment from Spaln_aa2Genome TGGCTTGATCGTTCCTGAAGTGAGGGGTAACGAGACCGTGCCTGAGGTGGTCACGACGTCTGGCTACGCGCTGCTCCACTTTTTCAGCGATGCTGCATATAACCTAACTGGCTTCAACATTTTTTATTC catgaggacagtatattttaatattttataacggtggctctcccttccagTGGTCTGGTAGTCCCTGAGGTGCGGGGCAATGAGACTGTGCCTGAGGTGGTCACAACATCTGGATATGCACTGCTTCACTTTTTTAGTGATGCTGCATATAACCTAACTGGCTTAAACATTTTTTATTCgtaagagatgttacacattagaagagcacatgtaaagtcagggtatcatg Alignment from Spaln_nt2Genome TGGCTTGATCGTTCCTGAAGTGAGGGGTAACGAGACCGTGCCTGAGGTGGTCACGACGTCTGGCTACGCGCTGCTCCACTTTTTCAGCGATGCTGCATATAACCTAACTGGCTTCAACATTTTTTATTC catgaggacagtatattttaatattttataacggtggctctcccttccagTGGTCTGGTAGTCCCTGAGGTGCGGGGCAATGAGACTGTGCCTGAGGTGGTCACAACATCTGGATATGCACTGCTTCACTTTTTTAGTGATGCTGCATATAACCTAACTGGCTTAAACATTTTTTATTCgtaagagatgttacacattagaagagcacatgtaaagtcagggtatcatg Alignment from Pairagon TGGCTTGATCGTTCCTGAAGTGAGGGGTAACGAGACCGTGCCTGAGGTGGTCACGACGTCTGGCTACGCGCTGCTCCACTTTTTCAGCGATGCTGCATATAACCTAACTGGCTTCAACATTTTTTATTC catgaggacagtatattttaatattttataacggtggctctcccttccagTGGTCTGGTAGTCCCTGAGGTGCGGGGCAATGAGACTGTGCCTGAGGTGGTCACAACATCTGGATATGCACTGCTTCACTTTTTTAGTGATGCTGCATATAACCTAACTGGCTTAAACATTTTTTATTCgtaagagatgttacacattagaagagcacatgtaaagtcagggtatcatg Alignment from Exonerate_protein2genome TGGCTTGATCGTTCCTGAAGTGAGGGGTAACGAGACCGTGCCTGAGGTGGTCACGACGTCTGGCTACGCGCTGCTCCACTTTTTCAGCGATGCTGCATATAACCTAACTGGCTTCAACATTTTTTATTC catgaggacagtatattttaatattttataacggtggctctcccttccagTGGTCTGGTAGTCCCTGAGGTGCGGGGCAATGAGACTGTGCCTGAGGTGGTCACAACATCTGGATATGCACTGCTTCACTTTTTTAGTGATGCTGCATATAACCTAACTGGCTTAAACATTTTTTATTCgtaagagatgttacacattagaagagcacatgtaaagtcagggtatcatg Alignment from Exonerate_coding2genome TGGCTTGATCGTTCCTGAAGTGAGGGGTAACGAGACCGTGCCTGAGGTGGTCACGACGTCTGGCTACGCGCTGCTCCACTTTTTCAGCGATGCTGCATATAACCTAACTGGCTTCAACATTTTTTATTC catgaggacagtatattttaatattttataacggtggctctcccttccagTGGTCTGGTAGTCCCTGAGGTGCGGGGCAATGAGACTGTGCCTGAGGTGGTCACAACATCTGGATATGCACTGCTTCACTTTTTTAGTGATGCTGCATATAACCTAACTGGCTTAAACATTTTTTATTCgtaagagatgttacacattagaagagcacatgtaaagtcagggtatcatg Alignment from GeneWise TGGCTTGATCGTTCCTGAAGTGAGGGGTAACGAGACCGTGCCTGAGGTGGTCACGACGTCTGGCTACGCGCTGCTCCACTTTTTCAGCGATGCTGCATATAACCTAACTGGCTTCAACATTTTTTATTC catgaggacagtatattttaatattttataacggtggctctcccttccagTGGTCTGGTAGTCCCTGAGGTGCGGGGCAATGAGACTGTGCCTGAGGTGGTCACAACATCTGGATATGCACTGCTTCACTTTTTTAGTGATGCTGCATATAACCTAACTGGCTTAAACATTTTTTATTCgtaagagatgttacacattagaagagcacatgtaaagtcagggtatcatg #### Atrnl1_ID12433_6 --> 2 - 2 Original Alignment gcCCAGATTGTTCTCTGAATGTCCCTTCTACTGAGTCTTACTGGATTTTGCCAAATGTTAAACCCTTCAGCCCTTCCGTAGGTCGGGCCTCACATAAAGCAGTTTTACATGGGAAATTCATGTGGGTGATTGGAGGATATACTTTTAACTACAGTTCTTTTCAAATGGTTCTGaa acttttgctcattttaaccttgcagctttttctactctccctttccacaggcCCAGATTGTTCTCTGAATGTCCCTTCCACCGAGTCCTACTGGATCTTGCCAAATGTAAAAGCCTTCAGCCCTTCTGTGGGTCGGGCCTCTCATAAAGCAGTTCTACATGGGAAATTCATGTGGGTGATTGGGGGTTATACCTTCAACTACAGCTCCTTTCATATGATTCTGaagtaagtattgctatctaggccacctgattataacttgtcttgtacaaaat Alignment from CESAR gcCCAGATTGTTCTCTGAATGTCCCTTCTACTGAGTCTTACTGGATTTTGCCAAATGTTAAACCCTTCAGCCCTTCCGTAGGTCGGGCCTCACATAAAGCAGTTTTACATGGGAAATTCATGTGGGTGATTGGAGGATATACTTTTAACTACAGTTCTTTTCAAATGGTTCTGaa acttttgctcattttaaccttgcagctttttctactctccctttccacaggcCCAGATTGTTCTCTGAATGTCCCTTCCACCGAGTCCTACTGGATCTTGCCAAATGTAAAAGCCTTCAGCCCTTCTGTGGGTCGGGCCTCTCATAAAGCAGTTCTACATGGGAAATTCATGTGGGTGATTGGGGGTTATACCTTCAACTACAGCTCCTTTCATATGATTCTGaagtaagtattgctatctaggccacctgattataacttgtcttgtacaaaat Alignment from Spaln_aa2Genome GCCCAGATTGTTCTCTGAATGTCCCTTCTACTGAGTCTTACTGGATTTTGCCAAATGTTAAACCCTTCAGCCCTTCCGTAGGTCGGGCCTCACATAAAGCAGTTTTACATGGGAAATTCATGTGGGTGATTGGAGGATATACTTTTAACTACAGTTCTTTTCAAATGGTTCTGAA acttttgctcattttaaccttgcagctttttctactctccctttccacagGCCCAGATTGTTCTCTGAATGTCCCTTCCACCGAGTCCTACTGGATCTTGCCAAATGTAAAAGCCTTCAGCCCTTCTGTGGGTCGGGCCTCTCATAAAGCAGTTCTACATGGGAAATTCATGTGGGTGATTGGGGGTTATACCTTCAACTACAGCTCCTTTCATATGATTCTGAAgtaagtattgctatctaggccacctgattataacttgtcttgtacaaaat Alignment from Spaln_nt2Genome GCCCAGATTGTTCTCTGAATGTCCCTTCTACTGAGTCTTACTGGATTTTGCCAAATGTTAAACCCTTCAGCCCTTCCGTAGGTCGGGCCTCACATAAAGCAGTTTTACATGGGAAATTCATGTGGGTGATTGGAGGATATACTTTTAACTACAGTTCTTTTCAAATGGTTCTGAA acttttgctcattttaaccttgcagctttttctactctccctttccacagGCCCAGATTGTTCTCTGAATGTCCCTTCCACCGAGTCCTACTGGATCTTGCCAAATGTAAAAGCCTTCAGCCCTTCTGTGGGTCGGGCCTCTCATAAAGCAGTTCTACATGGGAAATTCATGTGGGTGATTGGGGGTTATACCTTCAACTACAGCTCCTTTCATATGATTCTGAAgtaagtattgctatctaggccacctgattataacttgtcttgtacaaaat Alignment from Pairagon GCCCAGATTGTTCTCTGAATGTCCCTTCTACTGAGTCTTACTGGATTTTGCCAAATGTTAAACCCTTCAGCCCTTCCGTAGGTCGGGCCTCACATAAAGCAGTTTTACATGGGAAATTCATGTGGGTGATTGGAGGATATACTTTTAACTACAGTTCTTTTCAAATGGTTCTGAA acttttgctcattttaaccttgcagctttttctactctccctttccacagGCCCAGATTGTTCTCTGAATGTCCCTTCCACCGAGTCCTACTGGATCTTGCCAAATGTAAAAGCCTTCAGCCCTTCTGTGGGTCGGGCCTCTCATAAAGCAGTTCTACATGGGAAATTCATGTGGGTGATTGGGGGTTATACCTTCAACTACAGCTCCTTTCATATGATTCTGAAgtaagtattgctatctaggccacctgattataacttgtcttgtacaaaat Alignment from Exonerate_protein2genome GCCCAGATTGTTCTCTGAATGTCCCTTCTACTGAGTCTTACTGGATTTTGCCAAATGTTAAACCCTTCAGCCCTTCCGTAGGTCGGGCCTCACATAAAGCAGTTTTACATGGGAAATTCATGTGGGTGATTGGAGGATATACTTTTAACTACAGTTCTTTTCAAATGGTTCTGAA acttttgctcattttaaccttgcagctttttctactctccctttccacagGCCCAGATTGTTCTCTGAATGTCCCTTCCACCGAGTCCTACTGGATCTTGCCAAATGTAAAAGCCTTCAGCCCTTCTGTGGGTCGGGCCTCTCATAAAGCAGTTCTACATGGGAAATTCATGTGGGTGATTGGGGGTTATACCTTCAACTACAGCTCCTTTCATATGATTCTGAAgtaagtattgctatctaggccacctgattataacttgtcttgtacaaaat Alignment from Exonerate_coding2genome GCCCAGATTGTTCTCTGAATGTCCCTTCTACTGAGTCTTACTGGATTTTGCCAAATGTTAAACCCTTCAGCCCTTCCGTAGGTCGGGCCTCACATAAAGCAGTTTTACATGGGAAATTCATGTGGGTGATTGGAGGATATACTTTTAACTACAGTTCTTTTCAAATGGTTCTGAA acttttgctcattttaaccttgcagctttttctactctccctttccacagGCCCAGATTGTTCTCTGAATGTCCCTTCCACCGAGTCCTACTGGATCTTGCCAAATGTAAAAGCCTTCAGCCCTTCTGTGGGTCGGGCCTCTCATAAAGCAGTTCTACATGGGAAATTCATGTGGGTGATTGGGGGTTATACCTTCAACTACAGCTCCTTTCATATGATTCTGAAgtaagtattgctatctaggccacctgattataacttgtcttgtacaaaat Alignment from GeneWise GCCCAGATTGTTCTCTGAATGTCCCTTCTACTGAGTCTTACTGGATTTTGCCAAATGTTAAACCCTTCAGCCCTTCCGTAGGTCGGGCCTCACATAAAGCAGTTTTACATGGGAAATTCATGTGGGTGATTGGAGGATATACTTTTAACTACAGTTCTTTTCAAATGGTTCTGAA acttttgctcattttaaccttgcagctttttctactctccctttccacagGCCCAGATTGTTCTCTGAATGTCCCTTCCACCGAGTCCTACTGGATCTTGCCAAATGTAAAAGCCTTCAGCCCTTCTGTGGGTCGGGCCTCTCATAAAGCAGTTCTACATGGGAAATTCATGTGGGTGATTGGGGGTTATACCTTCAACTACAGCTCCTTTCATATGATTCTGAAgtaagtattgctatctaggccacctgattataacttgtcttgtacaaaat #### Atrnl1_ID12436_9 --> 2 - 2 Original Alignment ccTCAAACACTTGGCTAGTTCCAGAAACGAAAGGAGCCATTGTGCAAGGTGGATATGGCCACACAAGTGTGTATGACGAAGTGACCAAGTCCATCTATGTTCACGGAGGCTACAAAGCATTGCCTGGCAATAAGTACGGGCTGGTGGACGACCTCTATAAGTACGAAGTCAACACCAGGACTtg tttttggtggtctgtacatcctccttatttttcattttctaattttttagccTCCAACACTTGGCTAGTTCCAGAAACTAAAGGAGCCATTGTGCAAGGTGGATATGGCCATACTAGTGTGTATGATGAAGTGACCAAGTCCATTTATGTACATGGGGGCTACAAAGCGTTGCCTGGCAATAAGTGTGGGCTGGTGGATGACCTCTATAAGTATAAAGTCAACACCAGAACTtggtgagtcagcctggtattaaatcttaaggctgtgtttgtgatactagacc Alignment from CESAR ccTCAAACACTTGGCTAGTTCCAGAAACGAAAGGAGCCATTGTGCAAGGTGGATATGGCCACACAAGTGTGTATGACGAAGTGACCAAGTCCATCTATGTTCACGGAGGCTACAAAGCATTGCCTGGCAATAAGTACGGGCTGGTGGACGACCTCTATAAGTACGAAGTCAACACCAGGACTtg tttttggtggtctgtacatcctccttatttttcattttctaattttttagccTCCAACACTTGGCTAGTTCCAGAAACTAAAGGAGCCATTGTGCAAGGTGGATATGGCCATACTAGTGTGTATGATGAAGTGACCAAGTCCATTTATGTACATGGGGGCTACAAAGCGTTGCCTGGCAATAAGTGTGGGCTGGTGGATGACCTCTATAAGTATAAAGTCAACACCAGAACTtggtgagtcagcctggtattaaatcttaaggctgtgtttgtgatactagacc Alignment from Spaln_aa2Genome CCTCAAACACTTGGCTAGTTCCAGAAACGAAAGGAGCCATTGTGCAAGGTGGATATGGCCACACAAGTGTGTATGACGAAGTGACCAAGTCCATCTATGTTCACGGAGGCTACAAAGCATTGCCTGGCAATAAGTACGGGCTGGTGGACGACCTCTATAAGTACGAAGTCAACACCAGGACTTG tttttggtggtctgtacatcctccttatttttcattttctaattttttagCCTCCAACACTTGGCTAGTTCCAGAAACTAAAGGAGCCATTGTGCAAGGTGGATATGGCCATACTAGTGTGTATGATGAAGTGACCAAGTCCATTTATGTACATGGGGGCTACAAAGCGTTGCCTGGCAATAAGTGTGGGCTGGTGGATGACCTCTATAAGTATAAAGTCAACACCAGAACTTGgtgagtcagcctggtattaaatcttaaggctgtgtttgtgatactagacc Alignment from Spaln_nt2Genome CCTCAAACACTTGGCTAGTTCCAGAAACGAAAGGAGCCATTGTGCAAGGTGGATATGGCCACACAAGTGTGTATGACGAAGTGACCAAGTCCATCTATGTTCACGGAGGCTACAAAGCATTGCCTGGCAATAAGTACGGGCTGGTGGACGACCTCTATAAGTACGAAGTCAACACCAGGACTTG tttttggtggtctgtacatcctccttatttttcattttctaattttttagCCTCCAACACTTGGCTAGTTCCAGAAACTAAAGGAGCCATTGTGCAAGGTGGATATGGCCATACTAGTGTGTATGATGAAGTGACCAAGTCCATTTATGTACATGGGGGCTACAAAGCGTTGCCTGGCAATAAGTGTGGGCTGGTGGATGACCTCTATAAGTATAAAGTCAACACCAGAACTTGgtgagtcagcctggtattaaatcttaaggctgtgtttgtgatactagacc Alignment from Pairagon CCTCAAACACTTGGCTAGTTCCAGAAACGAAAGGAGCCATTGTGCAAGGTGGATATGGCCACACAAGTGTGTATGACGAAGTGACCAAGTCCATCTATGTTCACGGAGGCTACAAAGCATTGCCTGGCAATAAGTACGGGCTGGTGGACGACCTCTATAAGTACGAAGTCAACACCAGGACTTG tttttggtggtctgtacatcctccttatttttcattttctaattttttagCCTCCAACACTTGGCTAGTTCCAGAAACTAAAGGAGCCATTGTGCAAGGTGGATATGGCCATACTAGTGTGTATGATGAAGTGACCAAGTCCATTTATGTACATGGGGGCTACAAAGCGTTGCCTGGCAATAAGTGTGGGCTGGTGGATGACCTCTATAAGTATAAAGTCAACACCAGAACTTGgtgagtcagcctggtattaaatcttaaggctgtgtttgtgatactagacc Alignment from Exonerate_protein2genome CCTCAAACACTTGGCTAGTTCCAGAAACGAAAGGAGCCATTGTGCAAGGTGGATATGGCCACACAAGTGTGTATGACGAAGTGACCAAGTCCATCTATGTTCACGGAGGCTACAAAGCATTGCCTGGCAATAAGTACGGGCTGGTGGACGACCTCTATAAGTACGAAGTCAACACCAGGACTTG tttttggtggtctgtacatcctccttatttttcattttctaattttttagCCTCCAACACTTGGCTAGTTCCAGAAACTAAAGGAGCCATTGTGCAAGGTGGATATGGCCATACTAGTGTGTATGATGAAGTGACCAAGTCCATTTATGTACATGGGGGCTACAAAGCGTTGCCTGGCAATAAGTGTGGGCTGGTGGATGACCTCTATAAGTATAAAGTCAACACCAGAACTTGgtgagtcagcctggtattaaatcttaaggctgtgtttgtgatactagacc Alignment from Exonerate_coding2genome CCTCAAACACTTGGCTAGTTCCAGAAACGAAAGGAGCCATTGTGCAAGGTGGATATGGCCACACAAGTGTGTATGACGAAGTGACCAAGTCCATCTATGTTCACGGAGGCTACAAAGCATTGCCTGGCAATAAGTACGGGCTGGTGGACGACCTCTATAAGTACGAAGTCAACACCAGGACTTG tttttggtggtctgtacatcctccttatttttcattttctaattttttagCCTCCAACACTTGGCTAGTTCCAGAAACTAAAGGAGCCATTGTGCAAGGTGGATATGGCCATACTAGTGTGTATGATGAAGTGACCAAGTCCATTTATGTACATGGGGGCTACAAAGCGTTGCCTGGCAATAAGTGTGGGCTGGTGGATGACCTCTATAAGTATAAAGTCAACACCAGAACTTGgtgagtcagcctggtattaaatcttaaggctgtgtttgtgatactagacc Alignment from GeneWise CCTCAAACACTTGGCTAGTTCCAGAAACGAAAGGAGCCATTGTGCAAGGTGGATATGGCCACACAAGTGTGTATGACGAAGTGACCAAGTCCATCTATGTTCACGGAGGCTACAAAGCATTGCCTGGCAATAAGTACGGGCTGGTGGACGACCTCTATAAGTACGAAGTCAACACCAGGACTTG tttttggtggtctgtacatcctccttatttttcattttctaattttttagCCTCCAACACTTGGCTAGTTCCAGAAACTAAAGGAGCCATTGTGCAAGGTGGATATGGCCATACTAGTGTGTATGATGAAGTGACCAAGTCCATTTATGTACATGGGGGCTACAAAGCGTTGCCTGGCAATAAGTGTGGGCTGGTGGATGACCTCTATAAGTATAAAGTCAACACCAGAACTTGgtgagtcagcctggtattaaatcttaaggctgtgtttgtgatactagacc #### Atrnl1_ID12443_15 --> 2 - 0 Original Alignment ctCACCTTTGTGGAGAAGGCTGGAATCATGTTGGGGACGCTTGTCTTCGAATCAATTCCAGTCGAGAAAGCTATGATAATGCCAAACTTTATTGCTATAACCTCAGTGGAAATCTCGCCTCCCTGACCACGTCCAAGGAGGTGGAGTTTGTGTTGGATGAAATACAGAAGTTCACACAGCAG taaaactccataaggtgtttgggttaattccttttggtttgttcccacagctCATCTTTGTGGAGAAGGCTGGAATCATGTCGGGGATGCTTGTCATCGAATAAATTCTAGTCGAGAAAGCTATGATAATGCCAAACTTTATTGCTATAACCTCAGTGGGAATCCTGCCTCCTTAACCACCTCCAAGGAGGTCGAGTTTGTGTTGGATGAAATACAGAAGTTCACACAGCAGgtaagtctgtggacaccatgtactatagagtgtagtatcgcctgcaggac Alignment from CESAR ctCACCTTTGTGGAGAAGGCTGGAATCATGTTGGGGACGCTTGTCTTCGAATCAATTCCAGTCGAGAAAGCTATGATAATGCCAAACTTTATTGCTATAACCTCAGTGGAAATCTCGCCTCCCTGACCACGTCCAAGGAGGTGGAGTTTGTGTTGGATGAAATACAGAAGTTCACACAGCAG taaaactccataaggtgtttgggttaattccttttggtttgttcccacagctCATCTTTGTGGAGAAGGCTGGAATCATGTCGGGGATGCTTGTCATCGAATAAATTCTAGTCGAGAAAGCTATGATAATGCCAAACTTTATTGCTATAACCTCAGTGGGAATCCTGCCTCCTTAACCACCTCCAAGGAGGTCGAGTTTGTGTTGGATGAAATACAGAAGTTCACACAGCAGgtaagtctgtggacaccatgtactatagagtgtagtatcgcctgcaggac Alignment from Spaln_aa2Genome CTCACCTTTGTGGAGAAGGCTGGAATCATGTTGGGGACGCTTGTCTTCGAATCAATTCCAGTCGAGAAAGCTATGATAATGCCAAACTTTATTGCTATAACCTCAGTGGAAATCTCGCCTCCCTGACCACGTCCAAGGAGGTGGAGTTTGTGTTGGATGAAATACAGAAGTTCACACAGCAG taaaactccataaggtgtttgggttaattccttttggtttgttcccacagCTCATCTTTGTGGAGAAGGCTGGAATCATGTCGGGGATGCTTGTCATCGAATAAATTCTAGTCGAGAAAGCTATGATAATGCCAAACTTTATTGCTATAACCTCAGTGGGAATCCTGCCTCCTTAACCACCTCCAAGGAGGTCGAGTTTGTGTTGGATGAAATACAGAAGTTCACACAGCAGgtaagtctgtggacaccatgtactatagagtgtagtatcgcctgcaggac Alignment from Spaln_nt2Genome CTCACCTTTGTGGAGAAGGCTGGAATCATGTTGGGGACGCTTGTCTTCGAATCAATTCCAGTCGAGAAAGCTATGATAATGCCAAACTTTATTGCTATAACCTCAGTGGAAATCTCGCCTCCCTGACCACGTCCAAGGAGGTGGAGTTTGTGTTGGATGAAATACAGAAGTTCACACAGCAG taaaactccataaggtgtttgggttaattccttttggtttgttcccacagCTCATCTTTGTGGAGAAGGCTGGAATCATGTCGGGGATGCTTGTCATCGAATAAATTCTAGTCGAGAAAGCTATGATAATGCCAAACTTTATTGCTATAACCTCAGTGGGAATCCTGCCTCCTTAACCACCTCCAAGGAGGTCGAGTTTGTGTTGGATGAAATACAGAAGTTCACACAGCAGgtaagtctgtggacaccatgtactatagagtgtagtatcgcctgcaggac Alignment from Pairagon CTCACCTTTGTGGAGAAGGCTGGAATCATGTTGGGGACGCTTGTCTTCGAATCAATTCCAGTCGAGAAAGCTATGATAATGCCAAACTTTATTGCTATAACCTCAGTGGAAATCTCGCCTCCCTGACCACGTCCAAGGAGGTGGAGTTTGTGTTGGATGAAATACAGAAGTTCACACAGCAG taaaactccataaggtgtttgggttaattccttttggtttgttcccacagCTCATCTTTGTGGAGAAGGCTGGAATCATGTCGGGGATGCTTGTCATCGAATAAATTCTAGTCGAGAAAGCTATGATAATGCCAAACTTTATTGCTATAACCTCAGTGGGAATCCTGCCTCCTTAACCACCTCCAAGGAGGTCGAGTTTGTGTTGGATGAAATACAGAAGTTCACACAGCAGgtaagtctgtggacaccatgtactatagagtgtagtatcgcctgcaggac Alignment from Exonerate_protein2genome CTCACCTTTGTGGAGAAGGCTGGAATCATGTTGGGGACGCTTGTCTTCGAATCAATTCCAGTCGAGAAAGCTATGATAATGCCAAACTTTATTGCTATAACCTCAGTGGAAATCTCGCCTCCCTGACCACGTCCAAGGAGGTGGAGTTTGTGTTGGATGAAATACAGAAGTTCACACAGCAG taaaactccataaggtgtttgggttaattccttttggtttgttcccacagCTCATCTTTGTGGAGAAGGCTGGAATCATGTCGGGGATGCTTGTCATCGAATAAATTCTAGTCGAGAAAGCTATGATAATGCCAAACTTTATTGCTATAACCTCAGTGGGAATCCTGCCTCCTTAACCACCTCCAAGGAGGTCGAGTTTGTGTTGGATGAAATACAGAAGTTCACACAGCAGgtaagtctgtggacaccatgtactatagagtgtagtatcgcctgcaggac Alignment from Exonerate_coding2genome CTCACCTTTGTGGAGAAGGCTGGAATCATGTTGGGGACGCTTGTCTTCGAATCAATTCCAGTCGAGAAAGCTATGATAATGCCAAACTTTATTGCTATAACCTCAGTGGAAATCTCGCCTCCCTGACCACGTCCAAGGAGGTGGAGTTTGTGTTGGATGAAATACAGAAGTTCACACAGCAG taaaactccataaggtgtttgggttaattccttttggtttgttcccacagCTCATCTTTGTGGAGAAGGCTGGAATCATGTCGGGGATGCTTGTCATCGAATAAATTCTAGTCGAGAAAGCTATGATAATGCCAAACTTTATTGCTATAACCTCAGTGGGAATCCTGCCTCCTTAACCACCTCCAAGGAGGTCGAGTTTGTGTTGGATGAAATACAGAAGTTCACACAGCAGgtaagtctgtggacaccatgtactatagagtgtagtatcgcctgcaggac Alignment from GeneWise CTCACCTTTGTGGAGAAGGCTGGAATCATGTTGGGGACGCTTGTCTTCGAATCAATTCCAGTCGAGAAAGCTATGATAATGCCAAACTTTATTGCTATAACCTCAGTGGAAATCTCGCCTCCCTGACCACGTCCAAGGAGGTGGAGTTTGTGTTGGATGAAATACAGAAGTTCACACAGCAG taaaactccataaggtgtttgggttaattccttttggtttgttcccacagCTCATCTTTGTGGAGAAGGCTGGAATCATGTCGGGGATGCTTGTCATCGAATAAATTCTAGTCGAGAAAGCTATGATAATGCCAAACTTTATTGCTATAACCTCAGTGGGAATCCTGCCTCCTTAACCACCTCCAAGGAGGTCGAGTTTGTGTTGGATGAAATACAGAAGTTCACACAGCAGgtaagtctgtggacaccatgtactatagagtgtagtatcgcctgcaggac #### Atrnl1_ID12455_22 --> 2 - 0 Original Alignment acAGTCTTCTGATTGACTACCAGTTTACCTTCAGCTTGCTGCAGGAAGATGACCGGCACCACACTGCCATCAACTTCATCGCCAACCCAGAGCAG tattctggcacatcctgggctactgacatctgccccttcccccaccacagatAGCCTTCTGAATGACTACCAATTTACCTTCAGCTTACTCCAGGAGGATGACCGGCATCCCACTGCTACCAATTTCATAGCCAACCCTGAGCAGgtaagtgtgaatagttctgacctgtaacctcatgacccagctaatttctg Alignment from CESAR acAGTCTTCTGATTGACTACCAGTTTACCTTCAGCTTGCTGCAGGAAGATGACCGGCACCACACTGCCATCAACTTCATCGCCAACCCAGAGCAG tattctggcacatcctgggctactgacatctgccccttcccccaccacagatAGCCTTCTGAATGACTACCAATTTACCTTCAGCTTACTCCAGGAGGATGACCGGCATCCCACTGCTACCAATTTCATAGCCAACCCTGAGCAGgtaagtgtgaatagttctgacctgtaacctcatgacccagctaatttctg Alignment from Spaln_aa2Genome ACAGTCTTCTGATTGACTACCAGTTTACCTTCAGCTTGCTGCAGGAAGATGACCGGCACCACACTGCCATCAACTTCATCGCCAACCCAGAGCAG tattctggcacatcctgggctactgacatctgccccttcccccaccacagATAGCCTTCTGAATGACTACCAATTTACCTTCAGCTTACTCCAGGAGGATGACCGGCATCCCACTGCTACCAATTTCATAGCCAACCCTGAGCAGgtaagtgtgaatagttctgacctgtaacctcatgacccagctaatttctg Alignment from Spaln_nt2Genome ACAGTCTTCTGATTGACTACCAGTTTACCTTCAGCTTGCTGCAGGAAGATGACCGGCACCACACTGCCATCAACTTCATCGCCAACCCAGAGCAG tattctggcacatcctgggctactgacatctgccccttcccccaccacagATAGCCTTCTGAATGACTACCAATTTACCTTCAGCTTACTCCAGGAGGATGACCGGCATCCCACTGCTACCAATTTCATAGCCAACCCTGAGCAGgtaagtgtgaatagttctgacctgtaacctcatgacccagctaatttctg Alignment from Pairagon ACAGTCTTCTGATTGACTACCAGTTTACCTTCAGCTTGCTGCAGGAAGATGACCGGCACCACACTGCCATCAACTTCATCGCCAACCCAGAGCAG tattctggcacatcctgggctactgacatctgccccttcccccaccacagATAGCCTTCTGAATGACTACCAATTTACCTTCAGCTTACTCCAGGAGGATGACCGGCATCCCACTGCTACCAATTTCATAGCCAACCCTGAGCAGgtaagtgtgaatagttctgacctgtaacctcatgacccagctaatttctg Alignment from Exonerate_protein2genome ACAGTCTTCTGATTGACTACCAGTTTACCTTCAGCTTGCTGCAGGAAGATGACCGGCACCACACTGCCATCAACTTCATCGCCAACCCAGAGCAG tattctggcacatcctgggctactgacatctgccccttcccccaccacagATAGCCTTCTGAATGACTACCAATTTACCTTCAGCTTACTCCAGGAGGATGACCGGCATCCCACTGCTACCAATTTCATAGCCAACCCTGAGCAGgtaagtgtgaatagttctgacctgtaacctcatgacccagctaatttctg Alignment from Exonerate_coding2genome ACAGTCTTCTGATTGACTACCAGTTTACCTTCAGCTTGCTGCAGGAAGATGACCGGCACCACACTGCCATCAACTTCATCGCCAACCCAGAGCAG tattctggcacatcctgggctactgacatctgccccttcccccaccacagATAGCCTTCTGAATGACTACCAATTTACCTTCAGCTTACTCCAGGAGGATGACCGGCATCCCACTGCTACCAATTTCATAGCCAACCCTGAGCAGgtaagtgtgaatagttctgacctgtaacctcatgacccagctaatttctg Alignment from GeneWise ACAGTCTTCTGATTGACTACCAGTTTACCTTCAGCTTGCTGCAGGAAGATGACCGGCACCACACTGCCATCAACTTCATCGCCAACCCAGAGCAG tattctggcacatcctgggctactgacatctgccccttcccccaccacagATAGCCTTCTGAATGACTACCAATTTACCTTCAGCTTACTCCAGGAGGATGACCGGCATCCCACTGCTACCAATTTCATAGCCAACCCTGAGCAGgtaagtgtgaatagttctgacctgtaacctcatgacccagctaatttctg #### Atrnl1_ID12458_24 --> 2 - 0 Original Alignment gtGGAACCATATCTGGGGAAGAGACTCCTATAGTTTCTAAGACAAATATAAAGGAATACAGAGACAGCTTTTCCTATGAAAAATTTAACTTCAGAAGCAATCCTAATATCACATTTTATGTGTATGTCAGCAACTTCTCCTGGCCTATTAAAATACAG tactcatcctggaaatgctgttaggcaaaatcctggcttcttttccctaggaGGAACCATATCTGGGGAAGAGACTCCCATAGTTTCTAAGACAAATATAAAGGAATACAGAGACAGTTTTTCCTATGAAAAATTTAACTTTAGAAGCAATCCTAACATCACATTTTATGTGTATGTCAGCAACTTCTCCTGGCCCATTAAAATACAGgtgagtatgtgttcttggtgatattccccatcttgatggtacaacagtgt Alignment from CESAR gtGGAACCATATCTGGGGAAGAGACTCCTATAGTTTCTAAGACAAATATAAAGGAATACAGAGACAGCTTTTCCTATGAAAAATTTAACTTCAGAAGCAATCCTAATATCACATTTTATGTGTATGTCAGCAACTTCTCCTGGCCTATTAAAATACAG tactcatcctggaaatgctgttaggcaaaatcctggcttcttttccctaggaGGAACCATATCTGGGGAAGAGACTCCCATAGTTTCTAAGACAAATATAAAGGAATACAGAGACAGTTTTTCCTATGAAAAATTTAACTTTAGAAGCAATCCTAACATCACATTTTATGTGTATGTCAGCAACTTCTCCTGGCCCATTAAAATACAGgtgagtatgtgttcttggtgatattccccatcttgatggtacaacagtgt Alignment from Spaln_aa2Genome GTGGAACCATATCTGGGGAAGAGACTCCTATAGTTTCTAAGACAAATATAAAGGAATACAGAGACAGCTTTTCCTATGAAAAATTTAACTTCAGAAGCAATCCTAATATCACATTTTATGTGTATGTCAGCAACTTCTCCTGGCCTATTAAAATACAG tactcatcctggaaatgctgttaggcaaaatcctggcttcttttccctagGAGGAACCATATCTGGGGAAGAGACTCCCATAGTTTCTAAGACAAATATAAAGGAATACAGAGACAGTTTTTCCTATGAAAAATTTAACTTTAGAAGCAATCCTAACATCACATTTTATGTGTATGTCAGCAACTTCTCCTGGCCCATTAAAATACAGgtgagtatgtgttcttggtgatattccccatcttgatggtacaacagtgt Alignment from Spaln_nt2Genome GTGGAACCATATCTGGGGAAGAGACTCCTATAGTTTCTAAGACAAATATAAAGGAATACAGAGACAGCTTTTCCTATGAAAAATTTAACTTCAGAAGCAATCCTAATATCACATTTTATGTGTATGTCAGCAACTTCTCCTGGCCTATTAAAATACAG tactcatcctggaaatgctgttaggcaaaatcctggcttcttttccctagGAGGAACCATATCTGGGGAAGAGACTCCCATAGTTTCTAAGACAAATATAAAGGAATACAGAGACAGTTTTTCCTATGAAAAATTTAACTTTAGAAGCAATCCTAACATCACATTTTATGTGTATGTCAGCAACTTCTCCTGGCCCATTAAAATACAGgtgagtatgtgttcttggtgatattccccatcttgatggtacaacagtgt Alignment from Pairagon GTGGAACCATATCTGGGGAAGAGACTCCTATAGTTTCTAAGACAAATATAAAGGAATACAGAGACAGCTTTTCCTATGAAAAATTTAACTTCAGAAGCAATCCTAATATCACATTTTATGTGTATGTCAGCAACTTCTCCTGGCCTATTAAAATACAG tactcatcctggaaatgctgttaggcaaaatcctggcttcttttccctagGAGGAACCATATCTGGGGAAGAGACTCCCATAGTTTCTAAGACAAATATAAAGGAATACAGAGACAGTTTTTCCTATGAAAAATTTAACTTTAGAAGCAATCCTAACATCACATTTTATGTGTATGTCAGCAACTTCTCCTGGCCCATTAAAATACAGgtgagtatgtgttcttggtgatattccccatcttgatggtacaacagtgt Alignment from Exonerate_protein2genome GTGGAACCATATCTGGGGAAGAGACTCCTATAGTTTCTAAGACAAATATAAAGGAATACAGAGACAGCTTTTCCTATGAAAAATTTAACTTCAGAAGCAATCCTAATATCACATTTTATGTGTATGTCAGCAACTTCTCCTGGCCTATTAAAATACAG tactcatcctggaaatgctgttaggcaaaatcctggcttcttttccctagGAGGAACCATATCTGGGGAAGAGACTCCCATAGTTTCTAAGACAAATATAAAGGAATACAGAGACAGTTTTTCCTATGAAAAATTTAACTTTAGAAGCAATCCTAACATCACATTTTATGTGTATGTCAGCAACTTCTCCTGGCCCATTAAAATACAGgtgagtatgtgttcttggtgatattccccatcttgatggtacaacagtgt Alignment from Exonerate_coding2genome GTGGAACCATATCTGGGGAAGAGACTCCTATAGTTTCTAAGACAAATATAAAGGAATACAGAGACAGCTTTTCCTATGAAAAATTTAACTTCAGAAGCAATCCTAATATCACATTTTATGTGTATGTCAGCAACTTCTCCTGGCCTATTAAAATACAG tactcatcctggaaatgctgttaggcaaaatcctggcttcttttccctagGAGGAACCATATCTGGGGAAGAGACTCCCATAGTTTCTAAGACAAATATAAAGGAATACAGAGACAGTTTTTCCTATGAAAAATTTAACTTTAGAAGCAATCCTAACATCACATTTTATGTGTATGTCAGCAACTTCTCCTGGCCCATTAAAATACAGgtgagtatgtgttcttggtgatattccccatcttgatggtacaacagtgt Alignment from GeneWise GTGGAACCATATCTGGGGAAGAGACTCCTATAGTTTCTAAGACAAATATAAAGGAATACAGAGACAGCTTTTCCTATGAAAAATTTAACTTCAGAAGCAATCCTAATATCACATTTTATGTGTATGTCAGCAACTTCTCCTGGCCTATTAAAATACAG tactcatcctggaaatgctgttaggcaaaatcctggcttcttttccctagGAGGAACCATATCTGGGGAAGAGACTCCCATAGTTTCTAAGACAAATATAAAGGAATACAGAGACAGTTTTTCCTATGAAAAATTTAACTTTAGAAGCAATCCTAACATCACATTTTATGTGTATGTCAGCAACTTCTCCTGGCCCATTAAAATACAGgtgagtatgtgttcttggtgatattccccatcttgatggtacaacagtgt #### Atrnl1_ID12460_25 --> 0 - 2 Original Alignment ATTGCGTTTTCACAACACAACACAATCATGGATCTCGTGCAGTTCTTTGTCACCTTCTTCag ggtgaatgtatccagactcctaccaatttgtaactttcttttcattatagATCGCATTTTCACAACACAATACAATAATGGACCTGGTGCAGTTCTTTGTTACCTTCTTCaggtaagacttgttgagttttaacctattactcatctgctgtgcaattgtgc Alignment from CESAR ATTGCGTTTTCACAACACAACACAATCATGGATCTCGTGCAGTTCTTTGTCACCTTCTTCag ggtgaatgtatccagactcctaccaatttgtaactttcttttcattatagATCGCATTTTCACAACACAATACAATAATGGACCTGGTGCAGTTCTTTGTTACCTTCTTCaggtaagacttgttgagttttaacctattactcatctgctgtgcaattgtgc Alignment from Spaln_aa2Genome ATTGCGTTTTCACAACACAACACAATCATGGATCTCGTGCAGTTCTTTGTCACCTTCTTCAG ggtgaatgtatccagactcctaccaatttgtaactttcttttcattatagATCGCATTTTCACAACACAATACAATAATGGACCTGGTGCAGTTCTTTGTTACCTTCTTCAGgtaagacttgttgagttttaacctattactcatctgctgtgcaattgtgc Alignment from Spaln_nt2Genome ATTGCGTTTTCACAACACAACACAATCATGGATCTCGTGCAGTTCTTTGTCACCTTCTTCAG ggtgaatgtatccagactcctaccaatttgtaactttcttttcattatagATCGCATTTTCACAACACAATACAATAATGGACCTGGTGCAGTTCTTTGTTACCTTCTTCAGgtaagacttgttgagttttaacctattactcatctgctgtgcaattgtgc Alignment from Pairagon ATTGCGTTTTCACAACACAACACAATCATGGATCTCGTGCAGTTCTTTGTCACCTTCTTCAG ggtgaatgtatccagactcctaccaatttgtaactttcttttcattatagATCGCATTTTCACAACACAATACAATAATGGACCTGGTGCAGTTCTTTGTTACCTTCTTCAGgtaagacttgttgagttttaacctattactcatctgctgtgcaattgtgc Alignment from Exonerate_protein2genome ATTGCGTTTTCACAACACAACACAATCATGGATCTCGTGCAGTTCTTTGTCACCTTCTTCAG ggtgaatgtatccagactcctaccaatttgtaactttcttttcattatagATCGCATTTTCACAACACAATACAATAATGGACCTGGTGCAGTTCTTTGTTACCTTCTTCAGgtaagacttgttgagttttaacctattactcatctgctgtgcaattgtgc Alignment from Exonerate_coding2genome ATTGCGTTTTCACAACACAACACAATCATGGATCTCGTGCAGTTCTTTGTCACCTTCTTCAG ggtgaatgtatccagactcctaccaatttgtaactttcttttcattatagATCGCATTTTCACAACACAATACAATAATGGACCTGGTGCAGTTCTTTGTTACCTTCTTCAGgtaagacttgttgagttttaacctattactcatctgctgtgcaattgtgc Alignment from GeneWise ATTGCGTTTTCACAACACAACACAATCATGGATCTCGTGCAGTTCTTTGTCACCTTCTTCAG ggtgaatgtatccagactcctaccaatttgtaactttcttttcattatagATCGCATTTTCACAACACAATACAATAATGGACCTGGTGCAGTTCTTTGTTACCTTCTTCAGgtaagacttgttgagttttaacctattactcatctgctgtgcaattgtgc #### B3gat3_ID2490_2 --> 2 - 2 Original Alignment gcCAGCCTTGCGACTGCCTCCCTCCGCTTCGAGCTGCAGCTGAGCAGCTTCGGCAGAAGGACCTGAGGATATCCCAGTTGCAAGCTGATCTCCGTCGCCCACCCCCTGTCCCAGCCCAGCCCCCTGAACCTGAGGCCCTGCCTACTATCTATGTCATTACCCCCACCTACGCCag ttctgcggccccaagcagttttttgccaactattgattttatccctgtaggaCAGCCTTGTGACTGTCTCCCCCCACTGCGGGCTGCGACTGAGCAGCTTCGGCAGAAAGATCTGAGGATATCCCAGCTGCAAGCAGATATCCGTCGCCCACCTCCTGTGCCAGCCCAGCCCCCTGAACCCGAGGCACTGCCCATGATATATGTCATCACACCC---AATGCAaggtgagattctgaaatactagtcatctgcaactgtaaggaggttgaggatg Alignment from CESAR gcCAGCCTTGCGACTGCCTCCCTCCGCTTCGAGCTGCAGCTGAGCAGCTTCGGCAGAAGGACCTGAGGATATCCCAGTTGCAAGCTGATCTCCGTCGCCCACCCCCTGTCCCAGCCCAGCCCCCTGAACCTGAGGCCCTGCCTACTATCTATGTCATTACCCCCACCTACGCCag ttctgcggccccaagcagttttttgccaactattgattttatccctgtaggaCAGCCTTGTGACTGTCTCCCCCCACTGCGGGCTGCGACTGAGCAGCTTCGGCAGAAAGATCTGAGGATATCCCAGCTGCAAGCAGATATCCGTCGCCCACCTCCTGTGCCAGCCCAGCCCCCTGAACCCGAGGCACTGCCCATGATATATGTCATCACACCCAAT---GCAaggtgagattctgaaatactagtcatctgcaactgtaaggaggttgaggatg Alignment from Spaln_aa2Genome GCCAGCCTTGCGACTGCCTCCCTCCGCTTCGAGCTGCAGCTGAGCAGCTTCGGCAGAAGGACCTGAGGATATCCCAGTTGCAAGCTGATCTCCGTCGCCCACCCCCTGTCCCAGCCCAGCCCCCTGAACCTGAGGCCCTGCCTACTATCTATGTCATTACCCCCACCTACGCCAG ttctgcggccccaagcagttttttgccaactattgattttatccctgtagGACAGCCTTGTGACTGTCTCCCCCCACTGCGGGCTGCGACTGAGCAGCTTCGGCAGAAAGATCTGAGGATATCCCAGCTGCAAGCAGATATCCGTCGCCCACCTCCTGTGCCAGCCCAGCCCCCTGAACCCGAGGCACTGCCCATGATATATGTCATCACACCCAAT---GCAAGgtgagattctgaaatactagtcatctgcaactgtaaggaggttgaggatg Alignment from Spaln_nt2Genome GCCAGCCTTGCGACTGCCTCCCTCCGCTTCGAGCTGCAGCTGAGCAGCTTCGGCAGAAGGACCTGAGGATATCCCAGTTGCAAGCTGATCTCCGTCGCCCACCCCCTGTCCCAGCCCAGCCCCCTGAACCTGAGGCCCTGCCTACTATCTATGTCATTACCCCCACCTACGCCAG ttctgcggccccaagcagttttttgccaactattgattttatccctgtagGACAGCCTTGTGACTGTCTCCCCCCACTGCGGGCTGCGACTGAGCAGCTTCGGCAGAAAGATCTGAGGATATCCCAGCTGCAAGCAGATATCCGTCGCCCACCTCCTGTGCCAGCCCAGCCCCCTGAACCCGAGGCACTGCCCATGATATATGTCATCACACCCA---ATGCAAGgtgagattctgaaatactagtcatctgcaactgtaaggaggttgaggatg Alignment from Pairagon GCCAGCCTTGCGACTGCCTCCCTCCGCTTCGAGCTGCAGCTGAGCAGCTTCGGCAGAAGGACCTGAGGATATCCCAGTTGCAAGCTGATCTCCGTCGCCCACCCCCTGTCCCAGCCCAGCCCCCTGAACCTGAGGCCCTGCCTACTATCTATGTCATTACCCCCACCTACGCCAG ttctgcggccccaagcagttttttgccaactattgattttatccctgtagGACAGCCTTGTGACTGTCTCCCCCCACTGCGGGCTGCGACTGAGCAGCTTCGGCAGAAAGATCTGAGGATATCCCAGCTGCAAGCAGATATCCGTCGCCCACCTCCTGTGCCAGCCCAGCCCCCTGAACCCGAGGCACTGCCCATGATATATGTCATCACACCCA---ATGCAAGgtgagattctgaaatactagtcatctgcaactgtaaggaggttgaggatg Alignment from Exonerate_protein2genome GCCAGCCTTGCGACTGCCTCCCTCCGCTTCGAGCTGCAGCTGAGCAGCTTCGGCAGAAGGACCTGAGGATATCCCAGTTGCAAGCTGATCTCCGTCGCCCACCCCCTGTCCCAGCCCAGCCCCCTGAACCTGAGGCCCTGCCTACTATCTATGTCATTACCCCCACCTACGCCAG ttctgcggccccaagcagttttttgccaactattgattttatccctgtagGACAGCCTTGTGACTGTCTCCCCCCACTGCGGGCTGCGACTGAGCAGCTTCGGCAGAAAGATCTGAGGATATCCCAGCTGCAAGCAGATATCCGTCGCCCACCTCCTGTGCCAGCCCAGCCCCCTGAACCCGAGGCACTGCCCATGATATATGTCATCACACCCAAT---GCAAGgtgagattctgaaatactagtcatctgcaactgtaaggaggttgaggatg Alignment from Exonerate_coding2genome GCCAGCCTTGCGACTGCCTCCCTCCGCTTCGAGCTGCAGCTGAGCAGCTTCGGCAGAAGGACCTGAGGATATCCCAGTTGCAAGCTGATCTCCGTCGCCCACCCCCTGTCCCAGCCCAGCCCCCTGAACCTGAGGCCCTGCCTACTATCTATGTCATTACCCCCACCTACGCCAG ttctgcggccccaagcagttttttgccaactattgattttatccctgtagGACAGCCTTGTGACTGTCTCCCCCCACTGCGGGCTGCGACTGAGCAGCTTCGGCAGAAAGATCTGAGGATATCCCAGCTGCAAGCAGATATCCGTCGCCCACCTCCTGTGCCAGCCCAGCCCCCTGAACCCGAGGCACTGCCCATGATATATGTCATCACACCCAAT---GCAAGgtgagattctgaaatactagtcatctgcaactgtaaggaggttgaggatg Alignment from GeneWise GCCAGCCTTGCGACTGCCTCCCTCCGCTTCGAGCTGCAGCTGAGCAGCTTCGGCAGAAGGACCTGAGGATATCCCAGTTGCAAGCTGATCTCCGTCGCCCACCCCCTGTCCCAGCCCAGCCCCCTGAACCTGAGGCCCTGCCTACTATCTATGTCATTACCCCCACCTACGCCAG ttctgcggccccaagcagttttttgccaactattgattttatccctgtagGACAGCCTTGTGACTGTCTCCCCCCACTGCGGGCTGCGACTGAGCAGCTTCGGCAGAAAGATCTGAGGATATCCCAGCTGCAAGCAGATATCCGTCGCCCACCTCCTGTGCCAGCCCAGCCCCCTGAACCCGAGGCACTGCCCATGATATATGTCATCACACCCAAT---GCAAGgtgagattctgaaatactagtcatctgcaactgtaaggaggttgaggatg #### BC049760_ID1439_4 --> 1 - 0 Original Alignment gCTTGAGGAATCACTGTACGCTAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTAGAGAACTTG gggtgaagattatctgtgcacacttactccaccaattctgtttttcacaggCTTGAGGAATCACTGTATGCAAACCAACGGGACAACCTGGCCCTTGAAGAAAAGCTTGATAACTTGgtaagatccactacccttcactttggttcactttcccccattttccttgt Alignment from CESAR gCTTGAGGAATCACTGTACGCTAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTAGAGAACTTG gggtgaagattatctgtgcacacttactccaccaattctgtttttcacaggCTTGAGGAATCACTGTATGCAAACCAACGGGACAACCTGGCCCTTGAAGAAAAGCTTGATAACTTGgtaagatccactacccttcactttggttcactttcccccattttccttgt Alignment from Spaln_aa2Genome GCTTGAGGAATCACTGTACGCTAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTAGAGAACTTG gggtgaagattatctgtgcacacttactccaccaattctgtttttcacagGCTTGAGGAATCACTGTATGCAAACCAACGGGACAACCTGGCCCTTGAAGAAAAGCTTGATAACTTGgtaagatccactacccttcactttggttcactttcccccattttccttgt Alignment from Spaln_nt2Genome GCTTGAGGAATCACTGTACGCTAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTAGAGAACTTG gggtgaagattatctgtgcacacttactccaccaattctgtttttcacagGCTTGAGGAATCACTGTATGCAAACCAACGGGACAACCTGGCCCTTGAAGAAAAGCTTGATAACTTGgtaagatccactacccttcactttggttcactttcccccattttccttgt Alignment from Pairagon GCTTGAGGAATCACTGTACGCTAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTAGAGAACTTG gggtgaagattatctgtgcacacttactccaccaattctgtttttcacagGCTTGAGGAATCACTGTATGCAAACCAACGGGACAACCTGGCCCTTGAAGAAAAGCTTGATAACTTGgtaagatccactacccttcactttggttcactttcccccattttccttgt Alignment from Exonerate_protein2genome GCTTGAGGAATCACTGTACGCTAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTAGAGAACTTG gggtgaagattatctgtgcacacttactccaccaattctgtttttcacagGCTTGAGGAATCACTGTATGCAAACCAACGGGACAACCTGGCCCTTGAAGAAAAGCTTGATAACTTGgtaagatccactacccttcactttggttcactttcccccattttccttgt Alignment from Exonerate_coding2genome GCTTGAGGAATCACTGTACGCTAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTAGAGAACTTG gggtgaagattatctgtgcacacttactccaccaattctgtttttcacagGCTTGAGGAATCACTGTATGCAAACCAACGGGACAACCTGGCCCTTGAAGAAAAGCTTGATAACTTGgtaagatccactacccttcactttggttcactttcccccattttccttgt Alignment from GeneWise GCTTGAGGAATCACTGTACGCTAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTAGAGAACTTG gggtgaagattatctgtgcacacttactccaccaattctgtttttcacagGCTTGAGGAATCACTGTATGCAAACCAACGGGACAACCTGGCCCTTGAAGAAAAGCTTGATAACTTGgtaagatccactacccttcactttggttcactttcccccattttccttgt #### Bbs1_ID722_12 --> 0 - 1 Original Alignment GATGCAGTAACCAGCCTGTGCTTTGGCCGATACGGGCGAGAAGACAACACCCTCATCATGACTACTAGAg cagttaggtcgcactcaggtctatgctcttaactccggtgttccctccagGATGCAGTGACCAGTCTGTCCTTTGGCAGATATGGGCGCGAGGATAACACCCTTATTATGACCACAAAAggtgagtcctccagctaaagtaatacacaagtgtgtgccctgagggaaatg Alignment from CESAR GATGCAGTAACCAGCCTGTGCTTTGGCCGATACGGGCGAGAAGACAACACCCTCATCATGACTACTAGAg cagttaggtcgcactcaggtctatgctcttaactccggtgttccctccagGATGCAGTGACCAGTCTGTCCTTTGGCAGATATGGGCGCGAGGATAACACCCTTATTATGACCACAAAAggtgagtcctccagctaaagtaatacacaagtgtgtgccctgagggaaatg Alignment from Spaln_aa2Genome GATGCAGTAACCAGCCTGTGCTTTGGCCGATACGGGCGAGAAGACAACACCCTCATCATGACTACTAGAG cagttaggtcgcactcaggtctatgctcttaactccggtgttccctccagGATGCAGTGACCAGTCTGTCCTTTGGCAGATATGGGCGCGAGGATAACACCCTTATTATGACCACAAAAGgtgagtcctccagctaaagtaatacacaagtgtgtgccctgagggaaatg Alignment from Spaln_nt2Genome GATGCAGTAACCAGCCTGTGCTTTGGCCGATACGGGCGAGAAGACAACACCCTCATCATGACTACTAGAG cagttaggtcgcactcaggtctatgctcttaactccggtgttccctccagGATGCAGTGACCAGTCTGTCCTTTGGCAGATATGGGCGCGAGGATAACACCCTTATTATGACCACAAAAGgtgagtcctccagctaaagtaatacacaagtgtgtgccctgagggaaatg Alignment from Pairagon GATGCAGTAACCAGCCTGTGCTTTGGCCGATACGGGCGAGAAGACAACACCCTCATCATGACTACTAGAG cagttaggtcgcactcaggtctatgctcttaactccggtgttccctccagGATGCAGTGACCAGTCTGTCCTTTGGCAGATATGGGCGCGAGGATAACACCCTTATTATGACCACAAAAGgtgagtcctccagctaaagtaatacacaagtgtgtgccctgagggaaatg Alignment from Exonerate_protein2genome GATGCAGTAACCAGCCTGTGCTTTGGCCGATACGGGCGAGAAGACAACACCCTCATCATGACTACTAGAG cagttaggtcgcactcaggtctatgctcttaactccggtgttccctccagGATGCAGTGACCAGTCTGTCCTTTGGCAGATATGGGCGCGAGGATAACACCCTTATTATGACCACAAAAGgtgagtcctccagctaaagtaatacacaagtgtgtgccctgagggaaatg Alignment from Exonerate_coding2genome GATGCAGTAACCAGCCTGTGCTTTGGCCGATACGGGCGAGAAGACAACACCCTCATCATGACTACTAGAG cagttaggtcgcactcaggtctatgctcttaactccggtgttccctccagGATGCAGTGACCAGTCTGTCCTTTGGCAGATATGGGCGCGAGGATAACACCCTTATTATGACCACAAAAGgtgagtcctccagctaaagtaatacacaagtgtgtgccctgagggaaatg Alignment from GeneWise GATGCAGTAACCAGCCTGTGCTTTGGCCGATACGGGCGAGAAGACAACACCCTCATCATGACTACTAGAGGTGG cagttaggtcgcactcaggtctatgctcttaactccggtgttccctccagGATGCAGTGACCAGTCTGTCCTTTGGCAGATATGGGCGCGAGGATAACACCCTTATTATGACCACAAAAGGTGAgtcctccagctaaagtaatacacaagtgtgtgccctgagggaaatg #### Bbs1_ID723_11 --> 0 - 0 Original Alignment GGTAAGAAGCTGTGGACAGTGCAGATGCCTGCAGCCATCCTGACCATGAACCTCCTGGAGCAGCGATCCCGAGGCCTGCAAGCTGTCATGGCTGCTCTGGCCAATGGGGAAGTCCGAATTTACCGAGACAAGGCCCTGCTCAATGTCATCCATGCCCCG acaggatccttaggcccctgtgcatttgccacatgctctacctgtaacagGGCAAAAAACTATGGATGGTGCATATACCTGCGGCAATTCTAACCATGAACCTTCTGGAGCAGCGATATCGAGGGCTGCAAGCTGTAATGGCTGCTTTGGTCAATGGTGAAGTCAGAATTTATCGAGACAAGACCCTGCTCAATGTCACCCATGCTCCAgtaggcgactaggtttgtgctggtcctgttttaaccaccaccttgcagat Alignment from CESAR GGTAAGAAGCTGTGGACAGTGCAGATGCCTGCAGCCATCCTGACCATGAACCTCCTGGAGCAGCGATCCCGAGGCCTGCAAGCTGTCATGGCTGCTCTGGCCAATGGGGAAGTCCGAATTTACCGAGACAAGGCCCTGCTCAATGTCATCCATGCCCCG acaggatccttaggcccctgtgcatttgccacatgctctacctgtaacagGGCAAAAAACTATGGATGGTGCATATACCTGCGGCAATTCTAACCATGAACCTTCTGGAGCAGCGATATCGAGGGCTGCAAGCTGTAATGGCTGCTTTGGTCAATGGTGAAGTCAGAATTTATCGAGACAAGACCCTGCTCAATGTCACCCATGCTCCAgtaggcgactaggtttgtgctggtcctgttttaaccaccaccttgcagat Alignment from Spaln_aa2Genome GGTAAGAAGCTGTGGACAGTGCAGATGCCTGCAGCCATCCTGACCATGAACCTCCTGGAGCAGCGATCCCGAGGCCTGCAAGCTGTCATGGCTGCTCTGGCCAATGGGGAAGTCCGAATTTACCGAGACAAGGCCCTGCTCAATGTCATCCATGCCCCG acaggatccttaggcccctgtgcatttgccacatgctctacctgtaacagGGCAAAAAACTATGGATGGTGCATATACCTGCGGCAATTCTAACCATGAACCTTCTGGAGCAGCGATATCGAGGGCTGCAAGCTGTAATGGCTGCTTTGGTCAATGGTGAAGTCAGAATTTATCGAGACAAGACCCTGCTCAATGTCACCCATGCTCCAgtaggcgactaggtttgtgctggtcctgttttaaccaccaccttgcagat Alignment from Spaln_nt2Genome GGTAAGAAGCTGTGGACAGTGCAGATGCCTGCAGCCATCCTGACCATGAACCTCCTGGAGCAGCGATCCCGAGGCCTGCAAGCTGTCATGGCTGCTCTGGCCAATGGGGAAGTCCGAATTTACCGAGACAAGGCCCTGCTCAATGTCATCCATGCCCCG acaggatccttaggcccctgtgcatttgccacatgctctacctgtaacagGGCAAAAAACTATGGATGGTGCATATACCTGCGGCAATTCTAACCATGAACCTTCTGGAGCAGCGATATCGAGGGCTGCAAGCTGTAATGGCTGCTTTGGTCAATGGTGAAGTCAGAATTTATCGAGACAAGACCCTGCTCAATGTCACCCATGCTCCAgtaggcgactaggtttgtgctggtcctgttttaaccaccaccttgcagat Alignment from Pairagon GGTAAGAAGCTGTGGACAGTGCAGATGCCTGCAGCCATCCTGACCATGAACCTCCTGGAGCAGCGATCCCGAGGCCTGCAAGCTGTCATGGCTGCTCTGGCCAATGGGGAAGTCCGAATTTACCGAGACAAGGCCCTGCTCAATGTCATCCATGCCCCG acaggatccttaggcccctgtgcatttgccacatgctctacctgtaacagGGCAAAAAACTATGGATGGTGCATATACCTGCGGCAATTCTAACCATGAACCTTCTGGAGCAGCGATATCGAGGGCTGCAAGCTGTAATGGCTGCTTTGGTCAATGGTGAAGTCAGAATTTATCGAGACAAGACCCTGCTCAATGTCACCCATGCTCCAgtaggcgactaggtttgtgctggtcctgttttaaccaccaccttgcagat Alignment from Exonerate_protein2genome GGTAAGAAGCTGTGGACAGTGCAGATGCCTGCAGCCATCCTGACCATGAACCTCCTGGAGCAGCGATCCCGAGGCCTGCAAGCTGTCATGGCTGCTCTGGCCAATGGGGAAGTCCGAATTTACCGAGACAAGGCCCTGCTCAATGTCATCCATGCCCCG acaggatccttaggcccctgtgcatttgccacatgctctacctgtaacagGGCAAAAAACTATGGATGGTGCATATACCTGCGGCAATTCTAACCATGAACCTTCTGGAGCAGCGATATCGAGGGCTGCAAGCTGTAATGGCTGCTTTGGTCAATGGTGAAGTCAGAATTTATCGAGACAAGACCCTGCTCAATGTCACCCATGCTCCAgtaggcgactaggtttgtgctggtcctgttttaaccaccaccttgcagat Alignment from Exonerate_coding2genome GGTAAGAAGCTGTGGACAGTGCAGATGCCTGCAGCCATCCTGACCATGAACCTCCTGGAGCAGCGATCCCGAGGCCTGCAAGCTGTCATGGCTGCTCTGGCCAATGGGGAAGTCCGAATTTACCGAGACAAGGCCCTGCTCAATGTCATCCATGCCCCG acaggatccttaggcccctgtgcatttgccacatgctctacctgtaacagGGCAAAAAACTATGGATGGTGCATATACCTGCGGCAATTCTAACCATGAACCTTCTGGAGCAGCGATATCGAGGGCTGCAAGCTGTAATGGCTGCTTTGGTCAATGGTGAAGTCAGAATTTATCGAGACAAGACCCTGCTCAATGTCACCCATGCTCCAgtaggcgactaggtttgtgctggtcctgttttaaccaccaccttgcagat Alignment from GeneWise GGTAAGAAGCTGTGGACAGTGCAGATGCCTGCAGCCATCCTGACCATGAACCTCCTGGAGCAGCGATCCCGAGGCCTGCAAGCTGTCATGGCTGCTCTGGCCAATGGGGAAGTCCGAATTTACCGAGACAAGGCCCTGCTCAATGTCATCCATGCCCCG acaggatccttaggcccctgtgcatttgccacatgctctacctgtaacagGGCAAAAAACTATGGATGGTGCATATACCTGCGGCAATTCTAACCATGAACCTTCTGGAGCAGCGATATCGAGGGCTGCAAGCTGTAATGGCTGCTTTGGTCAATGGTGAAGTCAGAATTTATCGAGACAAGACCCTGCTCAATGTCACCCATGCTCCAgtaggcgactaggtttgtgctggtcctgttttaaccaccaccttgcagat #### Best1_ID2636_3 --> 2 - 1 Original Alignment gtTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTGCCGTGGCCCGACCGCCTCATGATCCAGGTGTCTAGCTTCGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGCACGCTCATCCGCTACGCCATCCTGGGCCAAGTGCTCATCCTGCGCAGCATCAGCACCTCGGTCTACAAGCGCTTTCCCACTCTTCACCACCTGGTGCTAGCAg agacccatgcccacccctatttatcctagtgttcaacttttttactacaggtTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTACCATGGCCCGACCGCCTTATGATACAAGTATCCAGCTTTGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGTACACTCATTCGCTATGCCATTCTGGGCCAAGTCCTTATCCTGTGCAGCATCAGCACTTCAGTGTACAAACACTTTCCCACTCTTCACCACCTAGTGCTAGCAggtaacgtatatctggagtggaggggtcgctcaactagaaacaagggtctc Alignment from CESAR gtTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTGCCGTGGCCCGACCGCCTCATGATCCAGGTGTCTAGCTTCGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGCACGCTCATCCGCTACGCCATCCTGGGCCAAGTGCTCATCCTGCGCAGCATCAGCACCTCGGTCTACAAGCGCTTTCCCACTCTTCACCACCTGGTGCTAGCAg agacccatgcccacccctatttatcctagtgttcaacttttttactacaggtTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTACCATGGCCCGACCGCCTTATGATACAAGTATCCAGCTTTGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGTACACTCATTCGCTATGCCATTCTGGGCCAAGTCCTTATCCTGTGCAGCATCAGCACTTCAGTGTACAAACACTTTCCCACTCTTCACCACCTAGTGCTAGCAggtaacgtatatctggagtggaggggtcgctcaactagaaacaagggtctc Alignment from Spaln_aa2Genome GTTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTGCCGTGGCCCGACCGCCTCATGATCCAGGTGTCTAGCTTCGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGCACGCTCATCCGCTACGCCATCCTGGGCCAAGTGCTCATCCTGCGCAGCATCAGCACCTCGGTCTACAAGCGCTTTCCCACTCTTCACCACCTGGTGCTAGCAG agacccatgcccacccctatttatcctagtgttcaacttttttactacagGTTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTACCATGGCCCGACCGCCTTATGATACAAGTATCCAGCTTTGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGTACACTCATTCGCTATGCCATTCTGGGCCAAGTCCTTATCCTGTGCAGCATCAGCACTTCAGTGTACAAACACTTTCCCACTCTTCACCACCTAGTGCTAGCAGgtaacgtatatctggagtggaggggtcgctcaactagaaacaagggtctc Alignment from Spaln_nt2Genome GTTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTGCCGTGGCCCGACCGCCTCATGATCCAGGTGTCTAGCTTCGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGCACGCTCATCCGCTACGCCATCCTGGGCCAAGTGCTCATCCTGCGCAGCATCAGCACCTCGGTCTACAAGCGCTTTCCCACTCTTCACCACCTGGTGCTAGCAG agacccatgcccacccctatttatcctagtgttcaacttttttactacagGTTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTACCATGGCCCGACCGCCTTATGATACAAGTATCCAGCTTTGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGTACACTCATTCGCTATGCCATTCTGGGCCAAGTCCTTATCCTGTGCAGCATCAGCACTTCAGTGTACAAACACTTTCCCACTCTTCACCACCTAGTGCTAGCAGgtaacgtatatctggagtggaggggtcgctcaactagaaacaagggtctc Alignment from Pairagon GTTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTGCCGTGGCCCGACCGCCTCATGATCCAGGTGTCTAGCTTCGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGCACGCTCATCCGCTACGCCATCCTGGGCCAAGTGCTCATCCTGCGCAGCATCAGCACCTCGGTCTACAAGCGCTTTCCCACTCTTCACCACCTGGTGCTAGCAG agacccatgcccacccctatttatcctagtgttcaacttttttactacagGTTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTACCATGGCCCGACCGCCTTATGATACAAGTATCCAGCTTTGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGTACACTCATTCGCTATGCCATTCTGGGCCAAGTCCTTATCCTGTGCAGCATCAGCACTTCAGTGTACAAACACTTTCCCACTCTTCACCACCTAGTGCTAGCAGgtaacgtatatctggagtggaggggtcgctcaactagaaacaagggtctc Alignment from Exonerate_protein2genome GTTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTGCCGTGGCCCGACCGCCTCATGATCCAGGTGTCTAGCTTCGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGCACGCTCATCCGCTACGCCATCCTGGGCCAAGTGCTCATCCTGCGCAGCATCAGCACCTCGGTCTACAAGCGCTTTCCCACTCTTCACCACCTGGTGCTAGCAG agacccatgcccacccctatttatcctagtgttcaacttttttactacagGTTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTACCATGGCCCGACCGCCTTATGATACAAGTATCCAGCTTTGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGTACACTCATTCGCTATGCCATTCTGGGCCAAGTCCTTATCCTGTGCAGCATCAGCACTTCAGTGTACAAACACTTTCCCACTCTTCACCACCTAGTGCTAGCAGgtaacgtatatctggagtggaggggtcgctcaactagaaacaagggtctc Alignment from Exonerate_coding2genome GTTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTGCCGTGGCCCGACCGCCTCATGATCCAGGTGTCTAGCTTCGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGCACGCTCATCCGCTACGCCATCCTGGGCCAAGTGCTCATCCTGCGCAGCATCAGCACCTCGGTCTACAAGCGCTTTCCCACTCTTCACCACCTGGTGCTAGCAG agacccatgcccacccctatttatcctagtgttcaacttttttactacagGTTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTACCATGGCCCGACCGCCTTATGATACAAGTATCCAGCTTTGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGTACACTCATTCGCTATGCCATTCTGGGCCAAGTCCTTATCCTGTGCAGCATCAGCACTTCAGTGTACAAACACTTTCCCACTCTTCACCACCTAGTGCTAGCAGgtaacgtatatctggagtggaggggtcgctcaactagaaacaagggtctc Alignment from GeneWise GTTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTGCCGTGGCCCGACCGCCTCATGATCCAGGTGTCTAGCTTCGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGCACGCTCATCCGCTACGCCATCCTGGGCCAAGTGCTCATCCTGCGCAGCATCAGCACCTCGGTCTACAAGCGCTTTCCCACTCTTCACCACCTGGTGCTAGCAG agacccatgcccacccctatttatcctagtgttcaacttttttactacagGTTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTACCATGGCCCGACCGCCTTATGATACAAGTATCCAGCTTTGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGTACACTCATTCGCTATGCCATTCTGGGCCAAGTCCTTATCCTGTGCAGCATCAGCACTTCAGTGTACAAACACTTTCCCACTCTTCACCACCTAGTGCTAGCAGgtaacgtatatctggagtggaggggtcgctcaactagaaacaagggtctc #### Best1_ID2637_2 --> 1 - 1 Original Alignment aATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGg ctacagctggagcaatagcctagagtcttttacatctttctctgactcagaATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGTTGGCTCTGTACTGTGCTAGCTACATTCAGCTCATCCCAATAGCATTTGTCCTAggtaaaggcttattgtagctttagtcctaaccctatctgccttccatacat Alignment from CESAR aATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGg ctacagctggagcaatagcctagagtcttttacatctttctctgactcagaATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGTTGGCTCTGTACTGTGCTAGCTACATTCAGCTCATCCCAATAGCATTTGTCCTAggtaaaggcttattgtagctttagtcctaaccctatctgccttccatacat Alignment from Spaln_aa2Genome AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG ctacagctggagcaatagcctagagtcttttacatctttctctgactcagAATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGTTGGCTCTGTACTGTGCTAGCTACATTCAGCTCATCCCAATAGCATTTGTCCTAGgtaaaggcttattgtagctttagtcctaaccctatctgccttccatacat Alignment from Spaln_nt2Genome AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG ctacagctggagcaatagcctagagtcttttacatctttctctgactcagAATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGTTGGCTCTGTACTGTGCTAGCTACATTCAGCTCATCCCAATAGCATTTGTCCTAGgtaaaggcttattgtagctttagtcctaaccctatctgccttccatacat Alignment from Pairagon AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG ctacagctggagcaatagcctagagtcttttacatctttctctgactcagAATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGTTGGCTCTGTACTGTGCTAGCTACATTCAGCTCATCCCAATAGCATTTGTCCTAGgtaaaggcttattgtagctttagtcctaaccctatctgccttccatacat Alignment from Exonerate_protein2genome AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG ctacagctggagcaatagcctagagtcttttacatctttctctgactcagAATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGTTGGCTCTGTACTGTGCTAGCTACATTCAGCTCATCCCAATAGCATTTGTCCTAGgtaaaggcttattgtagctttagtcctaaccctatctgccttccatacat Alignment from Exonerate_coding2genome AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG ctacagctggagcaatagcctagagtcttttacatctttctctgactcagAATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGTTGGCTCTGTACTGTGCTAGCTACATTCAGCTCATCCCAATAGCATTTGTCCTAGgtaaaggcttattgtagctttagtcctaaccctatctgccttccatacat Alignment from GeneWise AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG ctacagctggagcaatagcctagagtcttttacatctttctctgactcagAATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGTTGGCTCTGTACTGTGCTAGCTACATTCAGCTCATCCCAATAGCATTTGTCCTAGgtaaaggcttattgtagctttagtcctaaccctatctgccttccatacat #### Blnk_ID8057_14 --> 2 - 0 Original Alignment ggTTCCCAGAAGCGGGGAGCCCAGCTGCAGATGGACCGTTCCACAGCTTCCCATTTAATTCGACGTTTGCAGACCAG ttcactagatgcccaagaaataattgaattctgtctctgctttgttttagggTTCCCAGAAGCTGGAAGCCCTGCTGCAGCTGGACCTTTCCACAGCTTCCCGTTTAATTCAGCATTTGCAGATCAGgtaaggcatgagcttagtctcagtgaatcacttctggtgtatcactggca Alignment from CESAR ggTTCCCAGAAGCGGGGAGCCCAGCTGCAGATGGACCGTTCCACAGCTTCCCATTTAATTCGACGTTTGCAGACCAG ttcactagatgcccaagaaataattgaattctgtctctgctttgttttagggTTCCCAGAAGCTGGAAGCCCTGCTGCAGCTGGACCTTTCCACAGCTTCCCGTTTAATTCAGCATTTGCAGATCAGgtaaggcatgagcttagtctcagtgaatcacttctggtgtatcactggca Alignment from Spaln_aa2Genome GGTTCCCAGAAGCGGGGAGCCCAGCTGCAGATGGACCGTTCCACAGCTTCCCATTTAATTCGACGTTTGCAGACCAG ttcactagatgcccaagaaataattgaattctgtctctgctttgttttagGGTTCCCAGAAGCTGGAAGCCCTGCTGCAGCTGGACCTTTCCACAGCTTCCCGTTTAATTCAGCATTTGCAGATCAGgtaaggcatgagcttagtctcagtgaatcacttctggtgtatcactggca Alignment from Spaln_nt2Genome GGTTCCCAGAAGCGGGGAGCCCAGCTGCAGATGGACCGTTCCACAGCTTCCCATTTAATTCGACGTTTGCAGACCAG ttcactagatgcccaagaaataattgaattctgtctctgctttgttttagGGTTCCCAGAAGCTGGAAGCCCTGCTGCAGCTGGACCTTTCCACAGCTTCCCGTTTAATTCAGCATTTGCAGATCAGgtaaggcatgagcttagtctcagtgaatcacttctggtgtatcactggca Alignment from Pairagon GGTTCCCAGAAGCGGGGAGCCCAGCTGCAGATGGACCGTTCCACAGCTTCCCATTTAATTCGACGTTTGCAGACCAG ttcactagatgcccaagaaataattgaattctgtctctgctttgttttagGGTTCCCAGAAGCTGGAAGCCCTGCTGCAGCTGGACCTTTCCACAGCTTCCCGTTTAATTCAGCATTTGCAGATCAGgtaaggcatgagcttagtctcagtgaatcacttctggtgtatcactggca Alignment from Exonerate_protein2genome GGTTCCCAGAAGCGGGGAGCCCAGCTGCAGATGGACCGTTCCACAGCTTCCCATTTAATTCGACGTTTGCAGACCAG ttcactagatgcccaagaaataattgaattctgtctctgctttgttttagGGTTCCCAGAAGCTGGAAGCCCTGCTGCAGCTGGACCTTTCCACAGCTTCCCGTTTAATTCAGCATTTGCAGATCAGgtaaggcatgagcttagtctcagtgaatcacttctggtgtatcactggca Alignment from Exonerate_coding2genome ACCTGTCCATCAAAAGCCTGTACCCTTGCCAAGGTTCCCAGAAGCGGGGAGCCCAGCTGCAGATGGACCGTTC-CACAGCTTCCCATTTAATTCGACGTTTGCAGACCAG ttcactagatgcccaagAAATAATTGAATTCTGTCTCTGCTTTGTTTTAGGGTTCCCAGAAGCTGGAAGCCCTGCTGCAGCTGGACCTTTCCACAGCTTCCCGTTTAATTCAGCATTTGCAGATCAGgtaaggcatgagcttagtctcagtgaatcacttctggtgtatcactggca Alignment from GeneWise GGTTCCCAGAAGCGGGGAGCCCAGCTGCAGATGGACCGTTCCACAGCTTCCCATTTAATTCGACGTTTGCAGACCAG ttcactagatgcccaagaaataattgaattctgtctctgctttgttttagGGTTCCCAGAAGCTGGAAGCCCTGCTGCAGCTGGACCTTTCCACAGCTTCCCGTTTAATTCAGCATTTGCAGATCAGgtaaggcatgagcttagtctcagtgaatcacttctggtgtatcactggca #### Blnk_ID8059_12 --> 2 - 2 Original Alignment aaAAGCCTGTTCCTGCTGAGCGCCACCGAGGGTCTAGTCACAGACAAGACACTGTACAGTCACCAGTGTTTCCTCCCACCCAGaa tctgagcccccaacaaagccaaaagtcttggatctctttttctccctcagaaAAGACTGTTCCTGCTGAGCGACACCGAGGGTCAAGTCACAGGCAGGACACTGTCCAGTCACCAGTGTTTCCTCCTACCCAGaagtgagtaaccttaaattcctggttttgtctcttaattatgttggacccgc Alignment from CESAR aaAAGCCTGTTCCTGCTGAGCGCCACCGAGGGTCTAGTCACAGACAAGACACTGTACAGTCACCAGTGTTTCCTCCCACCCAGaa tctgagcccccaacaaagccaaaagtcttggatctctttttctccctcagaaAAGACTGTTCCTGCTGAGCGACACCGAGGGTCAAGTCACAGGCAGGACACTGTCCAGTCACCAGTGTTTCCTCCTACCCAGaagtgagtaaccttaaattcctggttttgtctcttaattatgttggacccgc Alignment from Spaln_aa2Genome AAAAGCCTGTTCCTGCTGAGCGCCACCGAGGGTCTAGTCACAGACAAGACACTGTACAGTCACCAGTGTTTCCTCCCACCCAGAA tctgagcccccaacaaagccaaaagtcttggatctctttttctccctcagAAAAGACTGTTCCTGCTGAGCGACACCGAGGGTCAAGTCACAGGCAGGACACTGTCCAGTCACCAGTGTTTCCTCCTACCCAGAAgtgagtaaccttaaattcctggttttgtctcttaattatgttggacccgc Alignment from Spaln_nt2Genome AAAAGCCTGTTCCTGCTGAGCGCCACCGAGGGTCTAGTCACAGACAAGACACTGTACAGTCACCAGTGTTTCCTCCCACCCAGAA tctgagcccccaacaaagccaaaagtcttggatctctttttctccctcagAAAAGACTGTTCCTGCTGAGCGACACCGAGGGTCAAGTCACAGGCAGGACACTGTCCAGTCACCAGTGTTTCCTCCTACCCAGAAgtgagtaaccttaaattcctggttttgtctcttaattatgttggacccgc Alignment from Pairagon AAAAGCCTGTTCCTGCTGAGCGCCACCGAGGGTCTAGTCACAGACAAGACACTGTACAGTCACCAGTGTTTCCTCCCACCCAGAA tctgagcccccaacaaagccaaaagtcttggatctctttttctccctcagAAAAGACTGTTCCTGCTGAGCGACACCGAGGGTCAAGTCACAGGCAGGACACTGTCCAGTCACCAGTGTTTCCTCCTACCCAGAAgtgagtaaccttaaattcctggttttgtctcttaattatgttggacccgc Alignment from Exonerate_protein2genome AAAAGCCTGTTCCTGCTGAGCGCCACCGAGGGTCTAGTCACAGACAAGACACTGTACAGTCACCAGTGTTTCCTCCCACCCAGAA tctgagcccccaacaaagccaaaagtcttggatctctttttctccctcagAAAAGACTGTTCCTGCTGAGCGACACCGAGGGTCAAGTCACAGGCAGGACACTGTCCAGTCACCAGTGTTTCCTCCTACCCAGAAgtgagtaaccttaaattcctggttttgtctcttaattatgttggacccgc Alignment from Exonerate_coding2genome AAAAGCCTGTTCCTGCTGAGCGCCACCGAGGGTCTAGTCACAGACAAGACACTGTACAGTCACCAGTGTTTCCTCCCACCCAGAA tctgagcccccaacaaagccaaaagtcttggatctctttttctccctcagAAAAGACTGTTCCTGCTGAGCGACACCGAGGGTCAAGTCACAGGCAGGACACTGTCCAGTCACCAGTGTTTCCTCCTACCCAGAAgtgagtaaccttaaattcctggttttgtctcttaattatgttggacccgc Alignment from GeneWise AAAAGCCTGTTCCTGCTGAGCGCCACCGAGGGTCTAGTCACAGACAAGACACTGTACAGTCACCAGTGTTTCCTCCCACCCAGAA tctgagcccccaacaaagccaaaagtcttggatctctttttctccctcagAAAAGACTGTTCCTGCTGAGCGACACCGAGGGTCAAGTCACAGGCAGGACACTGTCCAGTCACCAGTGTTTCCTCCTACCCAGAAgtgagtaaccttaaattcctggttttgtctcttaattatgttggacccgc #### Blnk_ID8065_6 --> 2 - 0 Original Alignment atAATCGATCCAGCCAGCGGCACTCTCCGCCCTTCAGCAAGACACTTCCCAGTAAGCCCAGCTGGCCTTCAGCGAAAGCGAGGCTGGCCTCCACTCTGCCAGCCCCCAACTCTCTACAGAAGCCTCAAGTCCCCCCCAAGCCCAAAGACCTCCTTGAGGATGAG agtgaaaatgattactattggagaggctctcccctccccctctctgacagatAACCAATCTAGCCAGCGCCACTCACCTCCCTTCAGTAAGATGCTTCCCAGCATGCCC---CGGCCTTCGTCAAAGGCAAGGCTAGCATCCACTCTACCAGCCCCTAACTCGCTGCAAAAACCCCAAATCCCTACTAAGCCTAAGGACCTTCTTGAGGATGAGgtgaacggagcttaggaaggtcgcatctatatcctgtttctcatggaccc Alignment from CESAR atAATCGATCCAGCCAGCGGCACTCTCCGCCCTTCAGCAAGACACTTCCCAGTAAGCCCAGCTGGCCTTCAGCGAAAGCGAGGCTGGCCTCCACTCTGCCAGCCCCCAACTCTCTACAGAAGCCTCAAGTCCCCCCCAAGCCCAAAGACCTCCTTGAGGATGAG agtgaaaatgattactattggagaggctctcccctccccctctctgacagatAACCAATCTAGCCAGCGCCACTCACCTCCCTTCAGTAAGATGCTTCCCAGCATGCCC---CGGCCTTCGTCAAAGGCAAGGCTAGCATCCACTCTACCAGCCCCTAACTCGCTGCAAAAACCCCAAATCCCTACTAAGCCTAAGGACCTTCTTGAGGATGAGgtgaacggagcttaggaaggtcgcatctatatcctgtttctcatggaccc Alignment from Spaln_aa2Genome ATAATCGATCCAGCCAGCGGCACTCTCCGCCCTTCAGCAAGACACTTCCCAGTAAGCCCAGCTGGCCTTCAGCGAAAGCGAGGCTGGCCTCCACTCTGCCAGCCCCCAACTCTCTACAGAAGCCTCAAGTCCCCCCCAAGCCCAAAGACCTCCTTGAGGATGAG agtgaaaatgattactattggagaggctctcccctccccctctctgacagATAACCAATCTAGCCAGCGCCACTCACCTCCCTTCAGTAAGATGCTTCCCAGCATGCCC---CGGCCTTCGTCAAAGGCAAGGCTAGCATCCACTCTACCAGCCCCTAACTCGCTGCAAAAACCCCAAATCCCTACTAAGCCTAAGGACCTTCTTGAGGATGAGgtgaacggagcttaggaaggtcgcatctatatcctgtttctcatggaccc Alignment from Spaln_nt2Genome ATAATCGATCCAGCCAGCGGCACTCTCCGCCCTTCAGCAAGACACTTCCCAGTAAGCCCAGCTGGCCTTCAGCGAAAGCGAGGCTGGCCTCCACTCTGCCAGCCCCCAACTCTCTACAGAAGCCTCAAGTCCCCCCCAAGCCCAAAGACCTCCTTGAGGATGAG agtgaaaatgattactattggagaggctctcccctccccctctctgacagATAACCAATCTAGCCAGCGCCACTCACCTCCCTTCAGTAAGATGCTTCCCAGCATGCC---CCGGCCTTCGTCAAAGGCAAGGCTAGCATCCACTCTACCAGCCCCTAACTCGCTGCAAAAACCCCAAATCCCTACTAAGCCTAAGGACCTTCTTGAGGATGAGgtgaacggagcttaggaaggtcgcatctatatcctgtttctcatggaccc Alignment from Pairagon ATAATCGATCCAGCCAGCGGCACTCTCCGCCCTTCAGCAAGACACTTCCCAGTAAGCCCAGCTGGCCTTCAGCGAAAGCGAGGCTGGCCTCCACTCTGCCAGCCCCCAACTCTCTACAGAAGCCTCAAGTCCCCCCCAAGCCCAAAGACCTCCTTGAGGATGAG agtgaaaatgattactattggagaggctctcccctccccctctctgacagATAACCAATCTAGCCAGCGCCACTCACCTCCCTTCAGTAAGATGCTTCCCAGCATGCC---CCGGCCTTCGTCAAAGGCAAGGCTAGCATCCACTCTACCAGCCCCTAACTCGCTGCAAAAACCCCAAATCCCTACTAAGCCTAAGGACCTTCTTGAGGATGAGgtgaacggagcttaggaaggtcgcatctatatcctgtttctcatggaccc Alignment from Exonerate_protein2genome ATAATCGATCCAGCCAGCGGCACTCTCCGCCCTTCAGCAAGACACTTCCCAGTAAGCCCAGCTGGCCTTCAGCGAAAGCGAGGCTGGCCTCCACTCTGCCAGCCCCCAACTCTCTACAGAAGCCTCAAGTCCCCCCCAAGCCCAAAGACCTCCTTGAGGATGAG agtgaaaatgattactattggagaggctctcccctccccctctctgacagATAACCAATCTAGCCAGCGCCACTCACCTCCCTTCAGTAAGATGCTTCCCAGCATGCCCCGG---CCTTCGTCAAAGGCAAGGCTAGCATCCACTCTACCAGCCCCTAACTCGCTGCAAAAACCCCAAATCCCTACTAAGCCTAAGGACCTTCTTGAGGATGAGgtgaacggagcttaggaaggtcgcatctatatcctgtttctcatggaccc Alignment from Exonerate_coding2genome ATAATCGATCCAGCCAGCGGCACTCTCCGCCCTTCAGCAAGACACTTCCCAGTAAGCCCAGCTGGCCTTCAGCGAAAGCGAGGCTGGCCTCCACTCTGCCAGCCCCCAACTCTCTACAGAAGCCTCAAGTCCCCCCCAAGCCCAAAGACCTCCTTGAGGATGAG agtgaaaatgattactattggagaggctctcccctccccctctctgacagATAACCAATCTAGCCAGCGCCACTCACCTCCCTTCAGTAAGATGCTTCCCAGCATGCCCCGG---CCTTCGTCAAAGGCAAGGCTAGCATCCACTCTACCAGCCCCTAACTCGCTGCAAAAACCCCAAATCCCTACTAAGCCTAAGGACCTTCTTGAGGATGAGgtgaacggagcttaggaaggtcgcatctatatcctgtttctcatggaccc Alignment from GeneWise ATAATCGATCCAGCCAGCGGCACTCTCCGCCCTTCAGCAAGACACTTCCCAGTAAGCCCAGCTGGCCTTCAGCGAAAGCGAGGCTGGCCTCCACTCTGCCAGCCCCCAACTCTCTACAGAAGCCTCAAGTCCCCCCCAAGCCCAAAGACCTCCTTGAGGATGAG agtgaaaatgattactattggagaggctctcccctccccctctctgacagATAACCAATCTAGCCAGCGCCACTCACCTCCCTTCAGTAAGATGCTTCCCAGCATGCCCCGG---CCTTCGTCAAAGGCAAGGCTAGCATCCACTCTACCAGCCCCTAACTCGCTGCAAAAACCCCAAATCCCTACTAAGCCTAAGGACCTTCTTGAGGATGAGgtgaacggagcttaggaaggtcgcatctatatcctgtttctcatggaccc #### Blnk_ID8068_3 --> 1 - 1 Original Alignment gCTAAAAGTCAAAGGCCCTCCAAGTGTTCCTCGAAGGGACTACGCATTAg tcatcatacggtaaaccttgtgttgtgtacccacagttaatttcttataggCTAAAAGTCAAAGGCCCTCCAAGTGTGCCACGAAGTGATTATGCATTAggtgagtctcttctttctagcattacattattagcctcaggtgtaggctga Alignment from CESAR gCTAAAAGTCAAAGGCCCTCCAAGTGTTCCTCGAAGGGACTACGCATTAg tcatcatacggtaaaccttgtgttgtgtacccacagttaatttcttataggCTAAAAGTCAAAGGCCCTCCAAGTGTGCCACGAAGTGATTATGCATTAggtgagtctcttctttctagcattacattattagcctcaggtgtaggctga Alignment from Spaln_aa2Genome GCTAAAAGTCAAAGGCCCTCCAAGTGTTCCTCGAAGGGACTACGCATTAG tcatcatacggtaaaccttgtgttgtgtacccacagttaatttcttatagGCTAAAAGTCAAAGGCCCTCCAAGTGTGCCACGAAGTGATTATGCATTAGgtgagtctcttctttctagcattacattattagcctcaggtgtaggctga Alignment from Spaln_nt2Genome GCTAAAAGTCAAAGGCCCTCCAAGTGTTCCTCGAAGGGACTACGCATTAG tcatcatacggtaaaccttgtgttgtgtacccacagttaatttcttatagGCTAAAAGTCAAAGGCCCTCCAAGTGTGCCACGAAGTGATTATGCATTAGgtgagtctcttctttctagcattacattattagcctcaggtgtaggctga Alignment from Pairagon GCTAAAAGTCAAAGGCCCTCCAAGTGTTCCTCGAAGGGACTACGCATTAG tcatcatacggtaaaccttgtgttgtgtacccacagttaatttcttatagGCTAAAAGTCAAAGGCCCTCCAAGTGTGCCACGAAGTGATTATGCATTAGgtgagtctcttctttctagcattacattattagcctcaggtgtaggctga Alignment from Exonerate_protein2genome GCTAAAAGTCAAAGGCCCTCCAAGTGTTCCTCGAAGGGACTACGCATTAG tcatcatacggtaaaccttgtgttgtgtacccacagttaatttcttatagGCTAAAAGTCAAAGGCCCTCCAAGTGTGCCACGAAGTGATTATGCATTAGgtgagtctcttctttctagcattacattattagcctcaggtgtaggctga Alignment from Exonerate_coding2genome GCTAAAAGTCAAAGGCCCTCCAAGTGTTCCTCGAAGGGACTACGCATTAG tcatcatacggtaaaccttgtgttgtgtacccacagttaatttcttatagGCTAAAAGTCAAAGGCCCTCCAAGTGTGCCACGAAGTGATTATGCATTAGgtgagtctcttctttctagcattacattattagcctcaggtgtaggctga Alignment from GeneWise GCTAAAAGTCAAAGGCCCTCCAAGTGTTCCTCGAAGGGACTACGCATTAG tcatcatacggtaaaccttgtgttgtgtacccacagttaatttcttatagGCTAAAAGTCAAAGGCCCTCCAAGTGTGCCACGAAGTGATTATGCATTAGgtgagtctcttctttctagcattacattattagcctcaggtgtaggctga #### Bscl2_ID2421_4 --> 0 - 0 Original Alignment GTACTGATGTATGGACAGCCATATCGAGTCACCTTAGAGCTTGAACTGCCCGAATCCCCTGTGAATCAAGACTTGGGCATGTTCTTAGTCACTGTTTCATGTTATACCAGAGGTGGCCGAATCATCTCCACTTCTTCACGCTCA cacacttattgctcagtctcaattcacctctaagttaccctctactgcagGTATTGATGTATGGACAGCCATAT------------GAGCTTGAGTTGCCCAAATCCCCTGTGAATAAAGGTTCAGGCATGTTCCTGGTAAGTATTTCATGTCGTACAAGGGGTAGTCAAATCATCTCTACATATTCCAGTTCTgtaatggtttatggacaatagtgaagcgttgtccaggttggtttagggat Alignment from CESAR GTACTGATGTATGGACAGCCATATCGAGTCACCTTAGAGCTTGAACTGCCCGAATCCCCTGTGAATCAAGACTTGGGCATGTTCTTAGTCACTGTTTCATGTTATACCAGAGGTGGCCGAATCATCTCCACTTCTTCACGCTCA cacacttattgctcagtctcaattcacctctaagttaccctctactgcagGTATTGATGTATGGACAGCCATAT------------GAGCTTGAGTTGCCCAAATCCCCTGTGAATAAAGGTTCAGGCATGTTCCTGGTAAGTATTTCATGTCGTACAAGGGGTAGTCAAATCATCTCTACATATTCCAGTTCTgtaatggtttatggacaatagtgaagcgttgtccaggttggtttagggat Alignment from Spaln_aa2Genome GTACTGATGTATGGACAGCCATATCGAGTCACCTTAGAGCTTGAACTGCCCGAATCCCCTGTGAATCAAGACTTGGGCATGTTCTTAGTCACTGTTTCATGTTATACCAGAGGTGGCCGAATCATCTCCACTTCTTCACGCTCA cacacttattgctcagtctcaattcacctctaagttaccctctactgcagGTATTGATGTATGGACAGCCATAT------------GAGCTTGAGTTGCCCAAATCCCCTGTGAATAAAGGTTCAGGCATGTTCCTGGTAAGTATTTCATGTCGTACAAGGGGTAGTCAAATCATCTCTACATATTCCAGTTCTgtaatggtttatggacaatagtgaagcgttgtccaggttggtttagggat Alignment from Spaln_nt2Genome GTACTGATGTATGGACAGCCATATCGAGTCACCTTAGAGCTTGAACTGCCCGAATCCCCTGTGAATCAAGACTTGGGCATGTTCTTAGTCACTGTTTCATGTTATACCAGAGGTGGCCGAATCATCTCCACTTCTTCACGCTCA cacacttattgctcagtctcaattcacctctaagttaccctctactgcagGTATTGATGTATGGACAGCCATAT------------GAGCTTGAGTTGCCCAAATCCCCTGTGAATAAAGGTTCAGGCATGTTCCTGGTAAGTATTTCATGTCGTACAAGGGGTAGTCAAATCATCTCTACATATTCCAGTTCTgtaatggtttatggacaatagtgaagcgttgtccaggttggtttagggat Alignment from Pairagon GTACTGATGTATGGACAGCCATATCGAGTCACCTTAGAGCTTGAACTGCCCGAATCCCCTGTGAATCAAGACTTGGGCATGTTCTTAGTCACTGTTTCATGTTATACCAGAGGTGGCCGAATCATCTCCACTTCTTCACGCTCA cacacttattgctcagtctcaattcacctctaagttaccctctactgcagGTATTGATGTATGGACAGCCATAT------------GAGCTTGAGTTGCCCAAATCCCCTGTGAATAAAGGTTCAGGCATGTTCCTGGTAAGTATTTCATGTCGTACAAGGGGTAGTCAAATCATCTCTACATATTCCAGTTCTgtaatggtttatggacaatagtgaagcgttgtccaggttggtttagggat Alignment from Exonerate_protein2genome GTACTGATGTATGGACAGCCATATCGAGTCACCTTAGAGCTTGAACTGCCCGAATCCCCTGTGAATCAAGACTTGGGCATGTTCTTAGTCACTGTTTCATGTTATACCAGAGGTGGCCGAATCATCTCCACTTCTTCACGCTCA cacacttattgctcagtctcaattcacctctaagttaccctctactgcagGTATTGATGTATGGACAGCCATAT------------GAGCTTGAGTTGCCCAAATCCCCTGTGAATAAAGGTTCAGGCATGTTCCTGGTAAGTATTTCATGTCGTACAAGGGGTAGTCAAATCATCTCTACATATTCCAGTTCTgtaatggtttatggacaatagtgaagcgttgtccaggttggtttagggat Alignment from Exonerate_coding2genome GTACTGATGTATGGACAGCCATATCGAGTCACCTTAGAGCTTGAACTGCCCGAATCCCCTGTGAATCAAGACTTGGGCATGTTCTTAGTCACTGTTTCATGTTATACCAGAGGTGGCCGAATCATCTCCACTTCTTCACGCTCA cacacttattgctcagtctcaattcacctctaagttaccctctactgcagGTATTGATGTATGGACAGCCATAT------------GAGCTTGAGTTGCCCAAATCCCCTGTGAATAAAGGTTCAGGCATGTTCCTGGTAAGTATTTCATGTCGTACAAGGGGTAGTCAAATCATCTCTACATATTCCAGTTCTgtaatggtttatggacaatagtgaagcgttgtccaggttggtttagggat Alignment from GeneWise GTACTGATGTATGGACAGCCATATCGAGTCACCTTAGAGCTTGAACTGCCCGAATCCCCTGTGAATCAAGACTTGGGCATGTTCTTAGTCACTGTTTCATGTTATACCAGAGGTGGCCGAATCATCTCCACTTCTTCACGCTCA cacacttattgctcagtctcaattcacctctaagttaccctctactgcagGTATTGATGTATGGACAGCCATAT------------GAGCTTGAGTTGCCCAAATCCCCTGTGAATAAAGGTTCAGGCATGTTCCTGGTAAGTATTTCATGTCGTACAAGGGGTAGTCAAATCATCTCTACATATTCCAGTTCTgtaatggtttatggacaatagtgaagcgttgtccaggttggtttagggat #### Btaf1_ID7240_19 --> 0 - 0 Original Alignment GAGTGTAAAGCTGTTACCCTAGCTGTGCAACCGCGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTTCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAACAACAATGTTTTAACAATAGATCAAGCAAACGACCTG aggtaatacaacctatgtctttccactagactgcgttcctgtcattttagGAATGTAAAGCTGTCACTCTAGCTGTACAACCACATTTACTTGATATCCTTTCAGAACACTTGTATTATGACGAAATTGCTGTCCCATTCACACGTATGCAGAATGAATGTAAACAGTTTATATCAACACTAGCTGATGCACATATTGAAGTTGGTAACAGTGTAAATAACAATGCATTAACAATAGATCAAGCAAATGACCTGgtaaggtacagaagtcaaagcaagtgtactctaatactgttagcgaagag Alignment from CESAR GAGTGTAAAGCTGTTACCCTAGCTGTGCAACCGCGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTTCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAACAACAATGTTTTAACAATAGATCAAGCAAACGACCTG aggtaatacaacctatgtctttccactagactgcgttcctgtcattttagGAATGTAAAGCTGTCACTCTAGCTGTACAACCACATTTACTTGATATCCTTTCAGAACACTTGTATTATGACGAAATTGCTGTCCCATTCACACGTATGCAGAATGAATGTAAACAGTTTATATCAACACTAGCTGATGCACATATTGAAGTTGGTAACAGTGTAAATAACAATGCATTAACAATAGATCAAGCAAATGACCTGgtaaggtacagaagtcaaagcaagtgtactctaatactgttagcgaagag Alignment from Spaln_aa2Genome GAGTGTAAAGCTGTTACCCTAGCTGTGCAACCGCGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTTCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAACAACAATGTTTTAACAATAGATCAAGCAAACGACCTG aggtaatacaacctatgtctttccactagactgcgttcctgtcattttagGAATGTAAAGCTGTCACTCTAGCTGTACAACCACATTTACTTGATATCCTTTCAGAACACTTGTATTATGACGAAATTGCTGTCCCATTCACACGTATGCAGAATGAATGTAAACAGTTTATATCAACACTAGCTGATGCACATATTGAAGTTGGTAACAGTGTAAATAACAATGCATTAACAATAGATCAAGCAAATGACCTGgtaaggtacagaagtcaaagcaagtgtactctaatactgttagcgaagag Alignment from Spaln_nt2Genome GAGTGTAAAGCTGTTACCCTAGCTGTGCAACCGCGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTTCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAACAACAATGTTTTAACAATAGATCAAGCAAACGACCTG aggtaatacaacctatgtctttccactagactgcgttcctgtcattttagGAATGTAAAGCTGTCACTCTAGCTGTACAACCACATTTACTTGATATCCTTTCAGAACACTTGTATTATGACGAAATTGCTGTCCCATTCACACGTATGCAGAATGAATGTAAACAGTTTATATCAACACTAGCTGATGCACATATTGAAGTTGGTAACAGTGTAAATAACAATGCATTAACAATAGATCAAGCAAATGACCTGgtaaggtacagaagtcaaagcaagtgtactctaatactgttagcgaagag Alignment from Pairagon GAGTGTAAAGCTGTTACCCTAGCTGTGCAACCGCGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTTCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAACAACAATGTTTTAACAATAGATCAAGCAAACGACCTG aggtaatacaacctatgtctttccactagactgcgttcctgtcattttagGAATGTAAAGCTGTCACTCTAGCTGTACAACCACATTTACTTGATATCCTTTCAGAACACTTGTATTATGACGAAATTGCTGTCCCATTCACACGTATGCAGAATGAATGTAAACAGTTTATATCAACACTAGCTGATGCACATATTGAAGTTGGTAACAGTGTAAATAACAATGCATTAACAATAGATCAAGCAAATGACCTGgtaaggtacagaagtcaaagcaagtgtactctaatactgttagcgaagag Alignment from Exonerate_protein2genome GAGTGTAAAGCTGTTACCCTAGCTGTGCAACCGCGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTTCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAACAACAATGTTTTAACAATAGATCAAGCAAACGACCTG aggtaatacaacctatgtctttccactagactgcgttcctgtcattttagGAATGTAAAGCTGTCACTCTAGCTGTACAACCACATTTACTTGATATCCTTTCAGAACACTTGTATTATGACGAAATTGCTGTCCCATTCACACGTATGCAGAATGAATGTAAACAGTTTATATCAACACTAGCTGATGCACATATTGAAGTTGGTAACAGTGTAAATAACAATGCATTAACAATAGATCAAGCAAATGACCTGgtaaggtacagaagtcaaagcaagtgtactctaatactgttagcgaagag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAGTGTAAAGCTGTTACCCTAGCTGTGCAACCGCGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTTCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAACAACAATGTTTTAACAATAGATCAAGCAAACGACCTG aggtaatacaacctatgtctttccactagactgcgttcctgtcattttagGAATGTAAAGCTGTCACTCTAGCTGTACAACCACATTTACTTGATATCCTTTCAGAACACTTGTATTATGACGAAATTGCTGTCCCATTCACACGTATGCAGAATGAATGTAAACAGTTTATATCAACACTAGCTGATGCACATATTGAAGTTGGTAACAGTGTAAATAACAATGCATTAACAATAGATCAAGCAAATGACCTGgtaaggtacagaagtcaaagcaagtgtactctaatactgttagcgaagag #### Btaf1_ID7252_31 --> 0 - 1 Original Alignment AACAATGTTTTGGAGTTGTGGTCATTATTTGATTTCCTTATGCCTGGATTTTTGGGTACTGAACGCCAGTTTGCTGCTCGATATGGCAAACCTATATTAGCGAGTAGGGATGCACGAAGCTCCAGTCGAGAACAAGAAGCAg gtcgaaaatcccctgaaggggagataacttcacatgcttgtcttctgcagAACAATGTTTTGGAGTTGAGGTCATTATTTGATTTTCTTATGCCTGGATTTTTGGGCACTGAACGTCAGTTTGCTGCACGATATGGGAAACCTATTTTAGCAAGTAAAGATACACGAAGCTCCAGTCAAGAGCAGGAAGCAggttggtagacagtacagctaagcaaaagcagggagaatggggtcttgagt Alignment from CESAR AACAATGTTTTGGAGTTGTGGTCATTATTTGATTTCCTTATGCCTGGATTTTTGGGTACTGAACGCCAGTTTGCTGCTCGATATGGCAAACCTATATTAGCGAGTAGGGATGCACGAAGCTCCAGTCGAGAACAAGAAGCAg gtcgaaaatcccctgaaggggagataacttcacatgcttgtcttctgcagAACAATGTTTTGGAGTTGAGGTCATTATTTGATTTTCTTATGCCTGGATTTTTGGGCACTGAACGTCAGTTTGCTGCACGATATGGGAAACCTATTTTAGCAAGTAAAGATACACGAAGCTCCAGTCAAGAGCAGGAAGCAggttggtagacagtacagctaagcaaaagcagggagaatggggtcttgagt Alignment from Spaln_aa2Genome AACAATGTTTTGGAGTTGTGGTCATTATTTGATTTCCTTATGCCTGGATTTTTGGGTACTGAACGCCAGTTTGCTGCTCGATATGGCAAACCTATATTAGCGAGTAGGGATGCACGAAGCTCCAGTCGAGAACAAGAAGCAG gtcgaaaatcccctgaaggggagataacttcacatgcttgtcttctgcagAACAATGTTTTGGAGTTGAGGTCATTATTTGATTTTCTTATGCCTGGATTTTTGGGCACTGAACGTCAGTTTGCTGCACGATATGGGAAACCTATTTTAGCAAGTAAAGATACACGAAGCTCCAGTCAAGAGCAGGAAGCAGgttggtagacagtacagctaagcaaaagcagggagaatggggtcttgagt Alignment from Spaln_nt2Genome AACAATGTTTTGGAGTTGTGGTCATTATTTGATTTCCTTATGCCTGGATTTTTGGGTACTGAACGCCAGTTTGCTGCTCGATATGGCAAACCTATATTAGCGAGTAGGGATGCACGAAGCTCCAGTCGAGAACAAGAAGCAG gtcgaaaatcccctgaaggggagataacttcacatgcttgtcttctgcagAACAATGTTTTGGAGTTGAGGTCATTATTTGATTTTCTTATGCCTGGATTTTTGGGCACTGAACGTCAGTTTGCTGCACGATATGGGAAACCTATTTTAGCAAGTAAAGATACACGAAGCTCCAGTCAAGAGCAGGAAGCAGgttggtagacagtacagctaagcaaaagcagggagaatggggtcttgagt Alignment from Pairagon AACAATGTTTTGGAGTTGTGGTCATTATTTGATTTCCTTATGCCTGGATTTTTGGGTACTGAACGCCAGTTTGCTGCTCGATATGGCAAACCTATATTAGCGAGTAGGGATGCACGAAGCTCCAGTCGAGAACAAGAAGCAG gtcgaaaatcccctgaaggggagataacttcacatgcttgtcttctgcagAACAATGTTTTGGAGTTGAGGTCATTATTTGATTTTCTTATGCCTGGATTTTTGGGCACTGAACGTCAGTTTGCTGCACGATATGGGAAACCTATTTTAGCAAGTAAAGATACACGAAGCTCCAGTCAAGAGCAGGAAGCAGgttggtagacagtacagctaagcaaaagcagggagaatggggtcttgagt Alignment from Exonerate_protein2genome AACAATGTTTTGGAGTTGTGGTCATTATTTGATTTCCTTATGCCTGGATTTTTGGGTACTGAACGCCAGTTTGCTGCTCGATATGGCAAACCTATATTAGCGAGTAGGGATGCACGAAGCTCCAGTCGAGAACAAGAAGCAG gtcgaaaatcccctgaaggggagataacttcacatgcttgtcttctgcagAACAATGTTTTGGAGTTGAGGTCATTATTTGATTTTCTTATGCCTGGATTTTTGGGCACTGAACGTCAGTTTGCTGCACGATATGGGAAACCTATTTTAGCAAGTAAAGATACACGAAGCTCCAGTCAAGAGCAGGAAGCAGgttggtagacagtacagctaagcaaaagcagggagaatggggtcttgagt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AACAATGTTTTGGAGTTGTGGTCATTATTTGATTTCCTTATGCCTGGATTTTTGGGTACTGAACGCCAGTTTGCTGCTCGATATGGCAAACCTATATTAGCGAGTAGGGATGCACGAAGCTCCAGTCGAGAACAAGAAGCAG gtcgaaaatcccctgaaggggagataacttcacatgcttgtcttctgcagAACAATGTTTTGGAGTTGAGGTCATTATTTGATTTTCTTATGCCTGGATTTTTGGGCACTGAACGTCAGTTTGCTGCACGATATGGGAAACCTATTTTAGCAAGTAAAGATACACGAAGCTCCAGTCAAGAGCAGGAAGCAGgttggtagacagtacagctaagcaaaagcagggagaatggggtcttgagt #### Btrc_ID9459_9 --> 0 - 2 Original Alignment ATCTGGGATAAAAGCACACTGGAATGCAAGCGGATTCTCACGGGCCACACGGGCTCCGTCCTGTGTCTGCAGTACGATGAGAGGGTGATCATCACAGGCTCCTCAGACTCCACCGTCag tccttgagagccgaatcattacagtgttagtaactgaaccattccctcagAATTGGGATAAAACTACACTCAAATGTAAGTGGATTCTAACAGGCCATACAGATTCAGTCCTTTGTCTGCAGTATGATGAGAGGGTAACAATCACAGGCTCGTCAGATACAACTGTCaggtaagtattagctgcattccattaaatattaagctaccagcttaagttct Alignment from CESAR ATCTGGGATAAAAGCACACTGGAATGCAAGCGGATTCTCACGGGCCACACGGGCTCCGTCCTGTGTCTGCAGTACGATGAGAGGGTGATCATCACAGGCTCCTCAGACTCCACCGTCag tccttgagagccgaatcattacagtgttagtaactgaaccattccctcagAATTGGGATAAAACTACACTCAAATGTAAGTGGATTCTAACAGGCCATACAGATTCAGTCCTTTGTCTGCAGTATGATGAGAGGGTAACAATCACAGGCTCGTCAGATACAACTGTCaggtaagtattagctgcattccattaaatattaagctaccagcttaagttct Alignment from Spaln_aa2Genome ATCTGGGATAAAAGCACACTGGAATGCAAGCGGATTCTCACGGGCCACACGGGCTCCGTCCTGTGTCTGCAGTACGATGAGAGGGTGATCATCACAGGCTCCTCAGACTCCACCGTCAG tccttgagagccgaatcattacagtgttagtaactgaaccattccctcagAATTGGGATAAAACTACACTCAAATGTAAGTGGATTCTAACAGGCCATACAGATTCAGTCCTTTGTCTGCAGTATGATGAGAGGGTAACAATCACAGGCTCGTCAGATACAACTGTCAGgtaagtattagctgcattccattaaatattaagctaccagcttaagttct Alignment from Spaln_nt2Genome ATCTGGGATAAAAGCACACTGGAATGCAAGCGGATTCTCACGGGCCACACGGGCTCCGTCCTGTGTCTGCAGTACGATGAGAGGGTGATCATCACAGGCTCCTCAGACTCCACCGTCAG tccttgagagccgaatcattacagtgttagtaactgaaccattccctcagAATTGGGATAAAACTACACTCAAATGTAAGTGGATTCTAACAGGCCATACAGATTCAGTCCTTTGTCTGCAGTATGATGAGAGGGTAACAATCACAGGCTCGTCAGATACAACTGTCAGgtaagtattagctgcattccattaaatattaagctaccagcttaagttct Alignment from Pairagon ATCTGGGATAAAAGCACACTGGAATGCAAGCGGATTCTCACGGGCCACACGGGCTCCGTCCTGTGTCTGCAGTACGATGAGAGGGTGATCATCACAGGCTCCTCAGACTCCACCGTCAG tccttgagagccgaatcattacagtgttagtaactgaaccattccctcagAATTGGGATAAAACTACACTCAAATGTAAGTGGATTCTAACAGGCCATACAGATTCAGTCCTTTGTCTGCAGTATGATGAGAGGGTAACAATCACAGGCTCGTCAGATACAACTGTCAGgtaagtattagctgcattccattaaatattaagctaccagcttaagttct Alignment from Exonerate_protein2genome ATCTGGGATAAAAGCACACTGGAATGCAAGCGGATTCTCACGGGCCACACGGGCTCCGTCCTGTGTCTGCAGTACGATGAGAGGGTGATCATCACAGGCTCCTCAGACTCCACCGTCAG tccttgagagccgaatcattacagtgttagtaactgaaccattccctcagAATTGGGATAAAACTACACTCAAATGTAAGTGGATTCTAACAGGCCATACAGATTCAGTCCTTTGTCTGCAGTATGATGAGAGGGTAACAATCACAGGCTCGTCAGATACAACTGTCAGgtaagtattagctgcattccattaaatattaagctaccagcttaagttct Alignment from Exonerate_coding2genome tccttgagagccgaatcattacagtgttagtaactgaaccattccctcagaattgggataaaactacactcaaatgtaagtggattctaacaggccatacagattcagtcctttgtctgcagtatgatgagagggtaacaatcacaggctcgtcagatacaactgtcaggtaagtattagctgcattccattaaatattaagctaccagcttaagttct Alignment from GeneWise ATCTGGGATAAAAGCACACTGGAATGCAAGCGGATTCTCACGGGCCACACGGGCTCCGTCCTGTGTCTGCAGTACGATGAGAGGGTGATCATCACAGGCTCCTCAGACTCCACCGTCAG tccttgagagccgaatcattacagtgttagtaactgaaccattccctcagAATTGGGATAAAACTACACTCAAATGTAAGTGGATTCTAACAGGCCATACAGATTCAGTCCTTTGTCTGCAGTATGATGAGAGGGTAACAATCACAGGCTCGTCAGATACAACTGTCAGgtaagtattagctgcattccattaaatattaagctaccagcttaagttct #### Btrc_ID9461_10 --> 1 - 0 Original Alignment aGTGTGGGATGTAAATGCAGGTGAGATGCTAAACACATTGATTCACCACTGTGAAGCCGTTCTGCACCTGCGCTTCAATAATGGCATGATGGTGACCTGTTCCAAAGACCGTTCCATCGCTGTGTGGGATATGGCTTCCCCAACTGACATCACCCTCAGGAGGGTGCTGGTG---GGACACCGAGCTGCGGTCAATGTTGTAGACTTTGATGACAAGTACATCGTTTCTGCCTCTGGAGATAGAACCATAAAG gtcatttcacaataagaggtaagtccaattgcttctttcccttgatttagaGTATGGGATATAAATGCAGGAGTGATGTTAAATACCTTGATACACCAGTGTGAAGCTATTCTACATTTGAGATTCAATAATGGTATGATGATTACATGTTCTAAAGACTGCTCAAAAGCTGTATGGGATATGGCTTCCCCGACTGATATCTCCCTCAGGAAGGTCCTGGTTGGTGGACATCGAGCAGCAGTT------GTAGATTTTGATGACAAGTATATAGTCTCTGCCTCTGGAGATAGGACTATAAAGgtgagtgctctaattcatatataaattgctttgctatttaagctgtaata Alignment from CESAR aGTGTGGGATGTAAATGCAGGTGAGATGCTAAACACATTGATTCACCACTGTGAAGCCGTTCTGCACCTGCGCTTCAATAATGGCATGATGGTGACCTGTTCCAAAGACCGTTCCATCGCTGTGTGGGATATGGCTTCCCCAACTGACATCACCCTCAGGAGGGTGCTGGTG---GGACACCGAGCTGCGGTCAATGTTGTAGACTTTGATGACAAGTACATCGTTTCTGCCTCTGGAGATAGAACCATAAAG gtcatttcacaataagaggtaagtccaattgcttctttcccttgatttagaGTATGGGATATAAATGCAGGAGTGATGTTAAATACCTTGATACACCAGTGTGAAGCTATTCTACATTTGAGATTCAATAATGGTATGATGATTACATGTTCTAAAGACTGCTCAAAAGCTGTATGGGATATGGCTTCCCCGACTGATATCTCCCTCAGGAAGGTCCTGGTTGGTGGACATCGAGCAGCA------GTTGTAGATTTTGATGACAAGTATATAGTCTCTGCCTCTGGAGATAGGACTATAAAGgtgagtgctctaattcatatataaattgctttgctatttaagctgtaata Alignment from Spaln_aa2Genome AGTGTGGGATGTAAATGCAGGTGAGATGCTAAACACATTGATTCACCACTGTGAAGCCGTTCTGCACCTGCGCTTCAATAATGGCATGATGGTGACCTGTTCCAAAGACCGTTCCATCGCTGTGTGGGATATGGCTTCCCCAACTGACATCACCCTCAGGAGGGTGCTGGTGGGACACCGAGCTGCGGTCAATGTTGTAGACTTTGATGACAAGTACATCGTTTCTGCCTCTGGAGATAGAACCATAAAG gtcatttcacaataagaggtaagtccaattgcttctttcccttgatttagAGTATGGGATATAAATGCAGGAGTGATGTTAAATACCTTGATACACCAGTGTGAAGCTATTCTACATTTGAGATTCAATAATGGTATGATGATTACATGTTCTAAAGACTGCTCAAAAGCTGTATGGGATATGGCTTCCCCGACTGATATCTCCCTCAGGAAGGTCCTGGTTGGTGGACATCGAGCAGCA---GTTGTAGATTTTGATGACAAGTATATAGTCTCTGCCTCTGGAGATAGGACTATAAAGgtgagtgctctaattcatatataaattgctttgctatttaagctgtaata Alignment from Spaln_nt2Genome AGTGTGGGATGTAAATGCAGGTGAGATGCTAAACACATTGATTCACCACTGTGAAGCCGTTCTGCACCTGCGCTTCAATAATGGCATGATGGTGACCTGTTCCAAAGACCGTTCCATCGCTGTGTGGGATATGGCTTCCCCAACTGACATCACCCTCAGGAGGGTGCTGGTGGG---ACACCGAGCTGCGGTCAATGTTGTAGACTTTGATGACAAGTACATCGTTTCTGCCTCTGGAGATAGAACCATAAAG gtcatttcacaataagaggtaagtccaattgcttctttcccttgatttagAGTATGGGATATAAATGCAGGAGTGATGTTAAATACCTTGATACACCAGTGTGAAGCTATTCTACATTTGAGATTCAATAATGGTATGATGATTACATGTTCTAAAGACTGCTCAAAAGCTGTATGGGATATGGCTTCCCCGACTGATATCTCCCTCAGGAAGGTCCTGGTTGGTGGACATCGAGCAGC------AGTTGTAGATTTTGATGACAAGTATATAGTCTCTGCCTCTGGAGATAGGACTATAAAGgtgagtgctctaattcatatataaattgctttgctatttaagctgtaata Alignment from Pairagon AGTGTGGGATGTAAATGCAGGTGAGATGCTAAACACATTGATTCACCACTGTGAAGCCGTTCTGCACCTGCGCTTCAATAATGGCATGATGGTGACCTGTTCCAAAGACCGTTCCATCGCTGTGTGGGATATGGCTTCCCCAACTGACATCACCCTCAGGAGGGTGCTGGT---GGGACACCGAGCTGCGGTCAATGTTGTAGACTTTGATGACAAGTACATCGTTTCTGCCTCTGGAGATAGAACCATAAAG gtcatttcacaataagaggtaagtccaattgcttctttcccttgatttagAGTATGGGATATAAATGCAGGAGTGATGTTAAATACCTTGATACACCAGTGTGAAGCTATTCTACATTTGAGATTCAATAATGGTATGATGATTACATGTTCTAAAGACTGCTCAAAAGCTGTATGGGATATGGCTTCCCCGACTGATATCTCCCTCAGGAAGGTCCTGGTTGGTGGACATCGAGCAGCA------GTTGTAGATTTTGATGACAAGTATATAGTCTCTGCCTCTGGAGATAGGACTATAAAGgtgagtgctctaattcatatataaattgctttgctatttaagctgtaata Alignment from Exonerate_protein2genome AGTGTGGGATGTAAATGCAGGTGAGATGCTAAACACATTGATTCACCACTGTGAAGCCGTTCTGCACCTGCGCTTCAATAATGGCATGATGGTGACCTGTTCCAAAGACCGTTCCATCGCTGTGTGGGATATGGCTTCCCCAACTGACATCACCCTCAGGAGGGTGCTGGTGGGACACCGAGCTGCGGTCAATGTTGTAGACTTTGATGACAAGTACATCGTTTCTGCCTCTGGAGATAGAACCATAAAG gtcatttcacaataagaggtaagtccaattgcttctttcccttgatttagAGTATGGGATATAAATGCAGGAGTGATGTTAAATACCTTGATACACCAGTGTGAAGCTATTCTACATTTGAGATTCAATAATGGTATGATGATTACATGTTCTAAAGACTGCTCAAAAGCTGTATGGGATATGGCTTCCCCGACTGATATCTCCCTCAGGAAGGTCCTGGTTGGTGGACATCGAGCAGCA---GTTGTAGATTTTGATGACAAGTATATAGTCTCTGCCTCTGGAGATAGGACTATAAAGgtgagtgctctaattcatatataaattgctttgctatttaagctgtaata Alignment from Exonerate_coding2genome CAGTACGATGAGAGGGTGATCATCACAGGCTCCTCAGACTCCACCGTCAGAGTGTGGGATGTAAATGCAGGTGAGATGCTAAACACATTGATTCACCACTGTGAAGCCGTTCTGCACCTGCGCTTCAATAATGGCATGATGGTGACCTGTTCCAAAGACCGTTCCATCGCTGTGTGGGATATGGCTTCCCCA--ACTGACATCACCCTCAGGAGGGTGCTGGTGGGACACCGAGCTGCGGTCAATGTTGTAGACTTTGATGACAAGTACATCGTTTCTGCCTCTGGAGATAGAACCATAAAG GTCATTTCACAATAAGAGGTAAGTCCAATTGCTTCTTTCCCTTGATTTAGAGTATGGGATATAAATGCAGGAGTGATGTTAAATACCTTGATACACCAGTGTGAAGCTATTCTACATTTGAGATTCAATAATGGTATGATGATTACATGTTCTAAAGACTGCTCAAAAGCTGTATGGGATATGGCTT--CCCCGACTGATATCTCCCTCAGGAAGGTCCTGGTTGGTGGACATCGAGCAGCA---GTTGTAGATTTTGATGACAAGTATATAGTCTCTGCCTCTGGAGATAGGACTATAAAGgtgagtgctctaattcatatataaattgctttgctatttaagctgtaata Alignment from GeneWise AGTGTGGGATGTAAATGCAGGTGAGATGCTAAACACATTGATTCACCACTGTGAAGCCGTTCTGCACCTGCGCTTCAATAATGGCATGATGGTGACCTGTTCCAAAGACCGTTCCATCGCTGTGTGGGATATGGCTTCCCCAACTGACATCACCCTCAGGAGGGTGCTGGTGGGA---CACCGAGCTGCGGTCAATGTTGTAGACTTTGATGACAAGTACATCGTTTCTGCCTCTGGAGATAGAACCATAAAG gtcatttcacaataagaggtaagtccaattgcttctttcccttgatttagAGTATGGGATATAAATGCAGGAGTGATGTTAAATACCTTGATACACCAGTGTGAAGCTATTCTACATTTGAGATTCAATAATGGTATGATGATTACATGTTCTAAAGACTGCTCAAAAGCTGTATGGGATATGGCTTCCCCGACTGATATCTCCCTCAGGAAGGTCCTGGTTGGTGGACATCGAGCAGCAGTT------GTAGATTTTGATGACAAGTATATAGTCTCTGCCTCTGGAGATAGGACTATAAAGgtgagtgctctaattcatatataaattgctttgctatttaagctgtaata #### C030046E11Rik_ID6287_2 --> 0 - 0 Original Alignment CCTAGTGTGTTAATTGTAACATACAAGGAACCAGCTAAATCATCTACTCAGTTTGGATCTTACAAACAAGCTGAATGGAGACCGGATAGTACCATGATAGCAGTGTCA ataattgtaacaggtatccatcttaacttgaagctttatggactttgtagCCTAGTGTGCTGATTATCACATACAAGGAACCAGCTAAATCATCTACACAGTTTGGCTCGTACAAACAAGCTGAATGGAGACCAGATAGTACCATGATAGCAGTGTCCgtgaggaaaactttcagtacacttttcttcagtccaggaagttgattgca Alignment from CESAR CCTAGTGTGTTAATTGTAACATACAAGGAACCAGCTAAATCATCTACTCAGTTTGGATCTTACAAACAAGCTGAATGGAGACCGGATAGTACCATGATAGCAGTGTCA ataattgtaacaggtatccatcttaacttgaagctttatggactttgtagCCTAGTGTGCTGATTATCACATACAAGGAACCAGCTAAATCATCTACACAGTTTGGCTCGTACAAACAAGCTGAATGGAGACCAGATAGTACCATGATAGCAGTGTCCgtgaggaaaactttcagtacacttttcttcagtccaggaagttgattgca Alignment from Spaln_aa2Genome CCTAGTGTGTTAATTGTAACATACAAGGAACCAGCTAAATCATCTACTCAGTTTGGATCTTACAAACAAGCTGAATGGAGACCGGATAGTACCATGATAGCAGTGTCA ataattgtaacaggtatccatcttaacttgaagctttatggactttgtagCCTAGTGTGCTGATTATCACATACAAGGAACCAGCTAAATCATCTACACAGTTTGGCTCGTACAAACAAGCTGAATGGAGACCAGATAGTACCATGATAGCAGTGTCCgtgaggaaaactttcagtacacttttcttcagtccaggaagttgattgca Alignment from Spaln_nt2Genome CCTAGTGTGTTAATTGTAACATACAAGGAACCAGCTAAATCATCTACTCAGTTTGGATCTTACAAACAAGCTGAATGGAGACCGGATAGTACCATGATAGCAGTGTCA ataattgtaacaggtatccatcttaacttgaagctttatggactttgtagCCTAGTGTGCTGATTATCACATACAAGGAACCAGCTAAATCATCTACACAGTTTGGCTCGTACAAACAAGCTGAATGGAGACCAGATAGTACCATGATAGCAGTGTCCgtgaggaaaactttcagtacacttttcttcagtccaggaagttgattgca Alignment from Pairagon CCTAGTGTGTTAATTGTAACATACAAGGAACCAGCTAAATCATCTACTCAGTTTGGATCTTACAAACAAGCTGAATGGAGACCGGATAGTACCATGATAGCAGTGTCA ataattgtaacaggtatccatcttaacttgaagctttatggactttgtagCCTAGTGTGCTGATTATCACATACAAGGAACCAGCTAAATCATCTACACAGTTTGGCTCGTACAAACAAGCTGAATGGAGACCAGATAGTACCATGATAGCAGTGTCCgtgaggaaaactttcagtacacttttcttcagtccaggaagttgattgca Alignment from Exonerate_protein2genome CCTAGTGTGTTAATTGTAACATACAAGGAACCAGCTAAATCATCTACTCAGTTTGGATCTTACAAACAAGCTGAATGGAGACCGGATAGTACCATGATAGCAGTGTCA ataattgtaacaggtatccatcttaacttgaagctttatggactttgtagCCTAGTGTGCTGATTATCACATACAAGGAACCAGCTAAATCATCTACACAGTTTGGCTCGTACAAACAAGCTGAATGGAGACCAGATAGTACCATGATAGCAGTGTCCgtgaggaaaactttcagtacacttttcttcagtccaggaagttgattgca Alignment from Exonerate_coding2genome CCTAGTGTGTTAATTGTAACATACAAGGAACCAGCTAAATCATCTACTCAGTTTGGATCTTACAAACAAGCTGAATGGAGACCGGATAGTACCATGATAGCAGTGTCA ataattgtaacaggtatccatcttaacttgaagctttatggactttgtagCCTAGTGTGCTGATTATCACATACAAGGAACCAGCTAAATCATCTACACAGTTTGGCTCGTACAAACAAGCTGAATGGAGACCAGATAGTACCATGATAGCAGTGTCCgtgaggaaaactttcagtacacttttcttcagtccaggaagttgattgca Alignment from GeneWise CCTAGTGTGTTAATTGTAACATACAAGGAACCAGCTAAATCATCTACTCAGTTTGGATCTTACAAACAAGCTGAATGGAGACCGGATAGTACCATGATAGCAGTGTCA ataattgtaacaggtatccatcttaacttgaagctttatggactttgtagCCTAGTGTGCTGATTATCACATACAAGGAACCAGCTAAATCATCTACACAGTTTGGCTCGTACAAACAAGCTGAATGGAGACCAGATAGTACCATGATAGCAGTGTCCgtgaggaaaactttcagtacacttttcttcagtccaggaagttgattgca #### C030046E11Rik_ID6288_3 --> 0 - 2 Original Alignment ACAGCAAATGGCTACATCTTGTTTTTTCATATTACATCTTCAAGAGGGGATAAATACCTTTATGAACCAGTGTATCCCaa ttgatcaggttgaagcagaagtggcaaattgtttcttccttcttaaacagACAGCAAATGGCTACATCTTGTTTTTTCATATCACATCTTCAAGGGGGGATAAATACTTATATGAGCCAGTGTACCCCaagtgaggtctagcattattatctatccaaactcatagctaccttgaagttt Alignment from CESAR ACAGCAAATGGCTACATCTTGTTTTTTCATATTACATCTTCAAGAGGGGATAAATACCTTTATGAACCAGTGTATCCCaa ttgatcaggttgaagcagaagtggcaaattgtttcttccttcttaaacagACAGCAAATGGCTACATCTTGTTTTTTCATATCACATCTTCAAGGGGGGATAAATACTTATATGAGCCAGTGTACCCCaagtgaggtctagcattattatctatccaaactcatagctaccttgaagttt Alignment from Spaln_aa2Genome ACAGCAAATGGCTACATCTTGTTTTTTCATATTACATCTTCAAGAGGGGATAAATACCTTTATGAACCAGTGTATCCCAA ttgatcaggttgaagcagaagtggcaaattgtttcttccttcttaaacagACAGCAAATGGCTACATCTTGTTTTTTCATATCACATCTTCAAGGGGGGATAAATACTTATATGAGCCAGTGTACCCCAAgtgaggtctagcattattatctatccaaactcatagctaccttgaagttt Alignment from Spaln_nt2Genome ACAGCAAATGGCTACATCTTGTTTTTTCATATTACATCTTCAAGAGGGGATAAATACCTTTATGAACCAGTGTATCCCAA ttgatcaggttgaagcagaagtggcaaattgtttcttccttcttaaacagACAGCAAATGGCTACATCTTGTTTTTTCATATCACATCTTCAAGGGGGGATAAATACTTATATGAGCCAGTGTACCCCAAgtgaggtctagcattattatctatccaaactcatagctaccttgaagttt Alignment from Pairagon ACAGCAAATGGCTACATCTTGTTTTTTCATATTACATCTTCAAGAGGGGATAAATACCTTTATGAACCAGTGTATCCCAA ttgatcaggttgaagcagaagtggcaaattgtttcttccttcttaaacagACAGCAAATGGCTACATCTTGTTTTTTCATATCACATCTTCAAGGGGGGATAAATACTTATATGAGCCAGTGTACCCCAAgtgaggtctagcattattatctatccaaactcatagctaccttgaagttt Alignment from Exonerate_protein2genome ACAGCAAATGGCTACATCTTGTTTTTTCATATTACATCTTCAAGAGGGGATAAATACCTTTATGAACCAGTGTATCCCAA ttgatcaggttgaagcagaagtggcaaattgtttcttccttcttaaacagACAGCAAATGGCTACATCTTGTTTTTTCATATCACATCTTCAAGGGGGGATAAATACTTATATGAGCCAGTGTACCCCAAgtgaggtctagcattattatctatccaaactcatagctaccttgaagttt Alignment from Exonerate_coding2genome ACAGCAAATGGCTACATCTTGTTTTTTCATATTACATCTTCAAGAGGGGATAAATACCTTTATGAACCAGTGTATCCCAA ttgatcaggttgaagcagaagtggcaaattgtttcttccttcttaaacagACAGCAAATGGCTACATCTTGTTTTTTCATATCACATCTTCAAGGGGGGATAAATACTTATATGAGCCAGTGTACCCCAAgtgaggtctagcattattatctatccaaactcatagctaccttgaagttt Alignment from GeneWise ACAGCAAATGGCTACATCTTGTTTTTTCATATTACATCTTCAAGAGGGGATAAATACCTTTATGAACCAGTGTATCCCAA ttgatcaggttgaagcagaagtggcaaattgtttcttccttcttaaacagACAGCAAATGGCTACATCTTGTTTTTTCATATCACATCTTCAAGGGGGGATAAATACTTATATGAGCCAGTGTACCCCAAgtgaggtctagcattattatctatccaaactcatagctaccttgaagttt #### C030046E11Rik_ID6297_11 --> 0 - 0 Original Alignment AGCTGGGGTGCAGAAGGCTATCACTTATGGGTAATCAGTGGGCTGGGCTCTCAGCACACTCAGATTGAGACCGACCTCAGGAGCACAGTTAAAGAGCCCAGCATTCTGCTGTTTCAGTTTATCAAGAGTGTACTCACTGTGAACCCTTGTATG cttggagcttctttatgaatttattctttgcctgctgcacttttttacagAGCTGGGGTGCAGAAGGCTACCAA---TGGGTAATCAGTGGGTTGGGCTCTCAGCACACAGAGATTGAGATTGATCTCAGGAGTACAGTCAAGGAACCCAGCATTCTCCTGTTTCAATTTATCAAGAGTGTACTT---GTGAATCCTTGTATGgtgagactaagtacagctggcttttcctgtaccatcttgggactaagatc Alignment from CESAR AGCTGGGGTGCAGAAGGCTATCACTTATGGGTAATCAGTGGGCTGGGCTCTCAGCACACTCAGATTGAGACCGACCTCAGGAGCACAGTTAAAGAGCCCAGCATTCTGCTGTTTCAGTTTATCAAGAGTGTACTCACTGTGAACCCTTGTATG cttggagcttctttatgaatttattctttgcctgctgcacttttttacagAGCTGGGGTGCAGAAGGCTACCAA---TGGGTAATCAGTGGGTTGGGCTCTCAGCACACAGAGATTGAGATTGATCTCAGGAGTACAGTCAAGGAACCCAGCATTCTCCTGTTTCAATTTATCAAGAGTGTACTT---GTGAATCCTTGTATGgtgagactaagtacagctggcttttcctgtaccatcttgggactaagatc Alignment from Spaln_aa2Genome AGCTGGGGTGCAGAAGGCTATCACTTATGGGTAATCAGTGGGCTGGGCTCTCAGCACACTCAGATTGAGACCGACCTCAGGAGCACAGTTAAAGAGCCCAGCATTCTGCTGTTTCAGTTTATCAAGAGTGTACTCACTGTGAACCCTTGTATG cttggagcttctttatgaatttattctttgcctgctgcacttttttacagAGCTGGGGTGCAGAAGGCTACCAA---TGGGTAATCAGTGGGTTGGGCTCTCAGCACACAGAGATTGAGATTGATCTCAGGAGTACAGTCAAGGAACCCAGCATTCTCCTGTTTCAATTTATCAAGAGTGTACTT---GTGAATCCTTGTATGgtgagactaagtacagctggcttttcctgtaccatcttgggactaagatc Alignment from Spaln_nt2Genome AGCTGGGGTGCAGAAGGCTATCACTTATGGGTAATCAGTGGGCTGGGCTCTCAGCACACTCAGATTGAGACCGACCTCAGGAGCACAGTTAAAGAGCCCAGCATTCTGCTGTTTCAGTTTATCAAGAGTGTACTCACTGTGAACCCTTGTATG cttggagcttctttatgaatttattctttgcctgctgcacttttttacagAGCTGGGGTGCAGAAGGCT---ACCAATGGGTAATCAGTGGGTTGGGCTCTCAGCACACAGAGATTGAGATTGATCTCAGGAGTACAGTCAAGGAACCCAGCATTCTCCTGTTTCAATTTATCAAGAGTGTACT---TGTGAATCCTTGTATGgtgagactaagtacagctggcttttcctgtaccatcttgggactaagatc Alignment from Pairagon AGCTGGGGTGCAGAAGGCTATCACTTATGGGTAATCAGTGGGCTGGGCTCTCAGCACACTCAGATTGAGACCGACCTCAGGAGCACAGTTAAAGAGCCCAGCATTCTGCTGTTTCAGTTTATCAAGAGTGTACTCACTGTGAACCCTTGTATG cttggagcttctttatgaatttattctttgcctgctgcacttttttacagAGCTGGGGTGCAGAAGGCTACCA---ATGGGTAATCAGTGGGTTGGGCTCTCAGCACACAGAGATTGAGATTGATCTCAGGAGTACAGTCAAGGAACCCAGCATTCTCCTGTTTCAATTTATCAAGAGTGTACT---TGTGAATCCTTGTATGgtgagactaagtacagctggcttttcctgtaccatcttgggactaagatc Alignment from Exonerate_protein2genome AGCTGGGGTGCAGAAGGCTATCACTTATGGGTAATCAGTGGGCTGGGCTCTCAGCACACTCAGATTGAGACCGACCTCAGGAGCACAGTTAAAGAGCCCAGCATTCTGCTGTTTCAGTTTATCAAGAGTGTACTCACTGTGAACCCTTGTATG cttggagcttctttatgaatttattctttgcctgctgcacttttttacagAGCTGGGGTGCAGAAGGCTACCAA---TGGGTAATCAGTGGGTTGGGCTCTCAGCACACAGAGATTGAGATTGATCTCAGGAGTACAGTCAAGGAACCCAGCATTCTCCTGTTTCAATTTATCAAGAGTGTACTT---GTGAATCCTTGTATGgtgagactaagtacagctggcttttcctgtaccatcttgggactaagatc Alignment from Exonerate_coding2genome AGCTGGGGTGCAGAAGGCTATCACTTATGGGTAATCAGTGGGCTGGGCTCTCAGCACACTCAGATTGAGACCGACCTCAGGAGCACAGTTAAAGAGCCCAGCATTCTGCTGTTTCAGTTTATCAAGAGTGTACTCACTGTGAACCCTTGTATG cttggagcttctttatgaatttattctttgcctgctgcacttttttacagAGCTGGGGTGCAGAAGGCTACCAA---TGGGTAATCAGTGGGTTGGGCTCTCAGCACACAGAGATTGAGATTGATCTCAGGAGTACAGTCAAGGAACCCAGCATTCTCCTGTTTCAATTTATCAAGAGTGTACTT---GTGAATCCTTGTATGgtgagactaagtacagctggcttttcctgtaccatcttgggactaagatc Alignment from GeneWise AGCTGGGGTGCAGAAGGCTATCACTTATGGGTAATCAGTGGGCTGGGCTCTCAGCACACTCAGATTGAGACCGACCTCAGGAGCACAGTTAAAGAGCCCAGCATTCTGCTGTTTCAGTTTATCAAGAGTGTACTCACTGTGAACCCTTGTATG cttggagcttctttatgaatttattctttgcctgctgcacttttttacagAGCTGGGGTGCAGAAGGCTACCAA---TGGGTAATCAGTGGGTTGGGCTCTCAGCACACAGAGATTGAGATTGATCTCAGGAGTACAGTCAAGGAACCCAGCATTCTCCTGTTTCAATTTATCAAGAGTGTACTT---GTGAATCCTTGTATGgtgagactaagtacagctggcttttcctgtaccatcttgggactaagatc #### C030046E11Rik_ID6306_20 --> 0 - 0 Original Alignment AATATGGAAGTCCCAGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGCAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAG gaaaatgtaggctttcaagcaatcggataccactgttcctcccatgccagAATATGGAAGTGCCTCCAGTAAGTAGGCAG---TCTACCCTGCTATTCAACACAGCGCTGGAGCAGGAAAAATGGGACCTATGCCGACACATGATTCGGTTTCTTAAAGCCATAGGTTCTGGTGAATCTGAGACCCCTCCGTCCACACCTACATCTCAGgtatctataaattttacagaatttttgtgcagttttcaaagagctagctt Alignment from CESAR AATATGGAAGTCCCAGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGCAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAG gaaaatgtaggctttcaagcaatcggataccactgttcctcccatgccagAATATGGAAGTGCCTCCAGTAAGTAGGCAG---TCTACCCTGCTATTCAACACAGCGCTGGAGCAGGAAAAATGGGACCTATGCCGACACATGATTCGGTTTCTTAAAGCCATAGGTTCTGGTGAATCTGAGACCCCTCCGTCCACACCTACATCTCAGgtatctataaattttacagaatttttgtgcagttttcaaagagctagctt Alignment from Spaln_aa2Genome AATATGGAAGTCCCAGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGCAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAG gaaaatgtaggctttcaagcaatcggataccactgttcctcccatgccagAATATGGAAGTGCCTCCAGTAAGTAGGCAG---TCTACCCTGCTATTCAACACAGCGCTGGAGCAGGAAAAATGGGACCTATGCCGACACATGATTCGGTTTCTTAAAGCCATAGGTTCTGGTGAATCTGAGACCCCTCCGTCCACACCTACATCTCAGgtatctataaattttacagaatttttgtgcagttttcaaagagctagctt Alignment from Spaln_nt2Genome AATATGGAAGTCCCAGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGCAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAG gaaaatgtaggctttcaagcaatcggataccactgttcctcccatgccagAATATGGAAGTGCCTCCAGTAAGTAGGCAG---TCTACCCTGCTATTCAACACAGCGCTGGAGCAGGAAAAATGGGACCTATGCCGACACATGATTCGGTTTCTTAAAGCCATAGGTTCTGGTGAATCTGAGACCCCTCCGTCCACACCTACATCTCAGgtatctataaattttacagaatttttgtgcagttttcaaagagctagctt Alignment from Pairagon AATATGGAAGTCCCAGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGCAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAG gaaaatgtaggctttcaagcaatcggataccactgttcctcccatgccagAATATGGAAGTGCCTCCAGTAAGTAGGCAGT---CTACCCTGCTATTCAACACAGCGCTGGAGCAGGAAAAATGGGACCTATGCCGACACATGATTCGGTTTCTTAAAGCCATAGGTTCTGGTGAATCTGAGACCCCTCCGTCCACACCTACATCTCAGgtatctataaattttacagaatttttgtgcagttttcaaagagctagctt Alignment from Exonerate_protein2genome AATATGGAAGTCCCAGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGCAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAG gaaaatgtaggctttcaagcaatcggataccactgttcctcccatgccagAATATGGAAGTGCCTCCAGTAAGTAGGCAG---TCTACCCTGCTATTCAACACAGCGCTGGAGCAGGAAAAATGGGACCTATGCCGACACATGATTCGGTTTCTTAAAGCCATAGGTTCTGGTGAATCTGAGACCCCTCCGTCCACACCTACATCTCAGgtatctataaattttacagaatttttgtgcagttttcaaagagctagctt Alignment from Exonerate_coding2genome AATATGGAAGTCCCAGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGCAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAG gaaaatgtaggctttcaagcaatcggataccactgttcctcccatgccagAATATGGAAGTGCCTCCAGTAAGTAGGCAG---TCTACCCTGCTATTCAACACAGCGCTGGAGCAGGAAAAATGGGACCTATGCCGACACATGATTCGGTTTCTTAAAGCCATAGGTTCTGGTGAATCTGAGACCCCTCCGTCCACACCTACATCTCAGgtatctataaattttacagaatttttgtgcagttttcaaagagctagctt Alignment from GeneWise AATATGGAAGTCCCAGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGCAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAG gaaaatgtaggctttcaagcaatcggataccactgttcctcccatgccagAATATGGAAGTGCCTCCAGTAAGTAGGCAG---TCTACCCTGCTATTCAACACAGCGCTGGAGCAGGAAAAATGGGACCTATGCCGACACATGATTCGGTTTCTTAAAGCCATAGGTTCTGGTGAATCTGAGACCCCTCCGTCCACACCTACATCTCAGgtatctataaattttacagaatttttgtgcagttttcaaagagctagctt #### C030046E11Rik_ID6308_22 --> 1 - 1 Original Alignment aTGGAGCAAAGACAGTGAATGTGCTGAGAACATGTATATTGACATGATGCTGTGGAGACATGCGCGGCGCCTCCTAGAAGAGGTGCGCTTAAAGGACCTTGGCTGCTTTGCAGCCCAGCTAGGCTTTGAACTGATCAGTTGGCTTTGCAAAGAACGTACCCGAGCTGCCCGTGTAGACAACTTTGTAGTAGCCCTGAAGAGACTTCACAAGGATTTCCTGTGGCCACTTCCCATTATCCCAGCCTCTTCCATAAGTTCCCCTTTCAAAAATGGGAAATGCCGAGCAg aaatggaataggtgcccctatcctgtccatgccctcctttctccttgcagaTGGAGCAGAGAAAGTGAATGTGCAGAGAACATGTATATTGATATGATGCTGTGGAGACATGCACGGCGCCTCCTAGAAGAGATACGTTTAAAGGACCTTCACTGCTTTGCAGCCCAGTTAGGCTTTGAACTGATTAGTTGGCTTTGCAAAGAACGGACCTGGGCCGCCCGGGTGGACAACTTTGTAGTAGCCCTGAAGAGACTTCACAAGGACTTCCTGTGGCCTCTACCCATTATTCCAGCTTCTTCTATTAGTTCCCCTTTCAAAAATGGAAAATGCCGAGCAggtatgctgagtctaataagtgttggcaatattatttatttatgccctggt Alignment from CESAR aTGGAGCAAAGACAGTGAATGTGCTGAGAACATGTATATTGACATGATGCTGTGGAGACATGCGCGGCGCCTCCTAGAAGAGGTGCGCTTAAAGGACCTTGGCTGCTTTGCAGCCCAGCTAGGCTTTGAACTGATCAGTTGGCTTTGCAAAGAACGTACCCGAGCTGCCCGTGTAGACAACTTTGTAGTAGCCCTGAAGAGACTTCACAAGGATTTCCTGTGGCCACTTCCCATTATCCCAGCCTCTTCCATAAGTTCCCCTTTCAAAAATGGGAAATGCCGAGCAg aaatggaataggtgcccctatcctgtccatgccctcctttctccttgcagaTGGAGCAGAGAAAGTGAATGTGCAGAGAACATGTATATTGATATGATGCTGTGGAGACATGCACGGCGCCTCCTAGAAGAGATACGTTTAAAGGACCTTCACTGCTTTGCAGCCCAGTTAGGCTTTGAACTGATTAGTTGGCTTTGCAAAGAACGGACCTGGGCCGCCCGGGTGGACAACTTTGTAGTAGCCCTGAAGAGACTTCACAAGGACTTCCTGTGGCCTCTACCCATTATTCCAGCTTCTTCTATTAGTTCCCCTTTCAAAAATGGAAAATGCCGAGCAggtatgctgagtctaataagtgttggcaatattatttatttatgccctggt Alignment from Spaln_aa2Genome ATGGAGCAAAGACAGTGAATGTGCTGAGAACATGTATATTGACATGATGCTGTGGAGACATGCGCGGCGCCTCCTAGAAGAGGTGCGCTTAAAGGACCTTGGCTGCTTTGCAGCCCAGCTAGGCTTTGAACTGATCAGTTGGCTTTGCAAAGAACGTACCCGAGCTGCCCGTGTAGACAACTTTGTAGTAGCCCTGAAGAGACTTCACAAGGATTTCCTGTGGCCACTTCCCATTATCCCAGCCTCTTCCATAAGTTCCCCTTTCAAAAATGGGAAATGCCGAGCAG aaatggaataggtgcccctatcctgtccatgccctcctttctccttgcagATGGAGCAGAGAAAGTGAATGTGCAGAGAACATGTATATTGATATGATGCTGTGGAGACATGCACGGCGCCTCCTAGAAGAGATACGTTTAAAGGACCTTCACTGCTTTGCAGCCCAGTTAGGCTTTGAACTGATTAGTTGGCTTTGCAAAGAACGGACCTGGGCCGCCCGGGTGGACAACTTTGTAGTAGCCCTGAAGAGACTTCACAAGGACTTCCTGTGGCCTCTACCCATTATTCCAGCTTCTTCTATTAGTTCCCCTTTCAAAAATGGAAAATGCCGAGCAGgtatgctgagtctaataagtgttggcaatattatttatttatgccctggt Alignment from Spaln_nt2Genome ATGGAGCAAAGACAGTGAATGTGCTGAGAACATGTATATTGACATGATGCTGTGGAGACATGCGCGGCGCCTCCTAGAAGAGGTGCGCTTAAAGGACCTTGGCTGCTTTGCAGCCCAGCTAGGCTTTGAACTGATCAGTTGGCTTTGCAAAGAACGTACCCGAGCTGCCCGTGTAGACAACTTTGTAGTAGCCCTGAAGAGACTTCACAAGGATTTCCTGTGGCCACTTCCCATTATCCCAGCCTCTTCCATAAGTTCCCCTTTCAAAAATGGGAAATGCCGAGCAG aaatggaataggtgcccctatcctgtccatgccctcctttctccttgcagATGGAGCAGAGAAAGTGAATGTGCAGAGAACATGTATATTGATATGATGCTGTGGAGACATGCACGGCGCCTCCTAGAAGAGATACGTTTAAAGGACCTTCACTGCTTTGCAGCCCAGTTAGGCTTTGAACTGATTAGTTGGCTTTGCAAAGAACGGACCTGGGCCGCCCGGGTGGACAACTTTGTAGTAGCCCTGAAGAGACTTCACAAGGACTTCCTGTGGCCTCTACCCATTATTCCAGCTTCTTCTATTAGTTCCCCTTTCAAAAATGGAAAATGCCGAGCAGgtatgctgagtctaataagtgttggcaatattatttatttatgccctggt Alignment from Pairagon ATGGAGCAAAGACAGTGAATGTGCTGAGAACATGTATATTGACATGATGCTGTGGAGACATGCGCGGCGCCTCCTAGAAGAGGTGCGCTTAAAGGACCTTGGCTGCTTTGCAGCCCAGCTAGGCTTTGAACTGATCAGTTGGCTTTGCAAAGAACGTACCCGAGCTGCCCGTGTAGACAACTTTGTAGTAGCCCTGAAGAGACTTCACAAGGATTTCCTGTGGCCACTTCCCATTATCCCAGCCTCTTCCATAAGTTCCCCTTTCAAAAATGGGAAATGCCGAGCAG aaatggaataggtgcccctatcctgtccatgccctcctttctccttgcagATGGAGCAGAGAAAGTGAATGTGCAGAGAACATGTATATTGATATGATGCTGTGGAGACATGCACGGCGCCTCCTAGAAGAGATACGTTTAAAGGACCTTCACTGCTTTGCAGCCCAGTTAGGCTTTGAACTGATTAGTTGGCTTTGCAAAGAACGGACCTGGGCCGCCCGGGTGGACAACTTTGTAGTAGCCCTGAAGAGACTTCACAAGGACTTCCTGTGGCCTCTACCCATTATTCCAGCTTCTTCTATTAGTTCCCCTTTCAAAAATGGAAAATGCCGAGCAGgtatgctgagtctaataagtgttggcaatattatttatttatgccctggt Alignment from Exonerate_protein2genome ATGGAGCAAAGACAGTGAATGTGCTGAGAACATGTATATTGACATGATGCTGTGGAGACATGCGCGGCGCCTCCTAGAAGAGGTGCGCTTAAAGGACCTTGGCTGCTTTGCAGCCCAGCTAGGCTTTGAACTGATCAGTTGGCTTTGCAAAGAACGTACCCGAGCTGCCCGTGTAGACAACTTTGTAGTAGCCCTGAAGAGACTTCACAAGGATTTCCTGTGGCCACTTCCCATTATCCCAGCCTCTTCCATAAGTTCCCCTTTCAAAAATGGGAAATGCCGAGCAG aaatggaataggtgcccctatcctgtccatgccctcctttctccttgcagATGGAGCAGAGAAAGTGAATGTGCAGAGAACATGTATATTGATATGATGCTGTGGAGACATGCACGGCGCCTCCTAGAAGAGATACGTTTAAAGGACCTTCACTGCTTTGCAGCCCAGTTAGGCTTTGAACTGATTAGTTGGCTTTGCAAAGAACGGACCTGGGCCGCCCGGGTGGACAACTTTGTAGTAGCCCTGAAGAGACTTCACAAGGACTTCCTGTGGCCTCTACCCATTATTCCAGCTTCTTCTATTAGTTCCCCTTTCAAAAATGGAAAATGCCGAGCAGgtatgctgagtctaataagtgttggcaatattatttatttatgccctggt Alignment from Exonerate_coding2genome ATGGAGCAAAGACAGTGAATGTGCTGAGAACATGTATATTGACATGATGCTGTGGAGACATGCGCGGCGCCTCCTAGAAGAGGTGCGCTTAAAGGACCTTGGCTGCTTTGCAGCCCAGCTAGGCTTTGAACTGATCAGTTGGCTTTGCAAAGAACGTACCCGAGCTGCCCGTGTAGACAACTTTGTAGTAGCCCTGAAGAGACTTCACAAGGATTTCCTGTGGCCACTTCCCATTATCCCAGCCTCTTCCATAAGTTCCCCTTTCAAAAATGGGAAATGCCGAGCAG aaatggaataggtgcccctatcctgtccatgccctcctttctccttgcagATGGAGCAGAGAAAGTGAATGTGCAGAGAACATGTATATTGATATGATGCTGTGGAGACATGCACGGCGCCTCCTAGAAGAGATACGTTTAAAGGACCTTCACTGCTTTGCAGCCCAGTTAGGCTTTGAACTGATTAGTTGGCTTTGCAAAGAACGGACCTGGGCCGCCCGGGTGGACAACTTTGTAGTAGCCCTGAAGAGACTTCACAAGGACTTCCTGTGGCCTCTACCCATTATTCCAGCTTCTTCTATTAGTTCCCCTTTCAAAAATGGAAAATGCCGAGCAGgtatgctgagtctaataagtgttggcaatattatttatttatgccctggt Alignment from GeneWise ATGGAGCAAAGACAGTGAATGTGCTGAGAACATGTATATTGACATGATGCTGTGGAGACATGCGCGGCGCCTCCTAGAAGAGGTGCGCTTAAAGGACCTTGGCTGCTTTGCAGCCCAGCTAGGCTTTGAACTGATCAGTTGGCTTTGCAAAGAACGTACCCGAGCTGCCCGTGTAGACAACTTTGTAGTAGCCCTGAAGAGACTTCACAAGGATTTCCTGTGGCCACTTCCCATTATCCCAGCCTCTTCCATAAGTTCCCCTTTCAAAAATGGGAAATGCCGAGCAG aaatggaataggtgcccctatcctgtccatgccctcctttctccttgcagATGGAGCAGAGAAAGTGAATGTGCAGAGAACATGTATATTGATATGATGCTGTGGAGACATGCACGGCGCCTCCTAGAAGAGATACGTTTAAAGGACCTTCACTGCTTTGCAGCCCAGTTAGGCTTTGAACTGATTAGTTGGCTTTGCAAAGAACGGACCTGGGCCGCCCGGGTGGACAACTTTGTAGTAGCCCTGAAGAGACTTCACAAGGACTTCCTGTGGCCTCTACCCATTATTCCAGCTTCTTCTATTAGTTCCCCTTTCAAAAATGGAAAATGCCGAGCAGgtatgctgagtctaataagtgttggcaatattatttatttatgccctggt #### C030046E11Rik_ID6309_23 --> 2 - 1 Original Alignment tgGGAGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGACGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGACACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAg tttcccaaatttttggtaaatggattttcatgtcaaccatttttccccagtaGGTGAGCATATGTTGAAATCCCAGTCGGCTGACCCCTTCATCACCCCCGAAATGGATGCAGGCATTTCTAACATTCATCGAAGCCAGAGTGGACTTAGTAACATTGGCCCCACCCATCGGGATACAGATAGAGCCTCATCTCCTGGGCCACAAATGCAAGATGCTTTCTTGACTCCTCTATCTAATAAAggtactgcacttacagctgggtaatagtagctgtttttattccactacgca Alignment from CESAR tgGGAGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGACGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGACACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAg tttcccaaatttttggtaaatggattttcatgtcaaccatttttccccagtaGGTGAGCATATGTTGAAATCCCAGTCGGCTGACCCCTTCATCACCCCCGAAATGGATGCAGGCATTTCTAACATTCATCGAAGCCAGAGTGGACTTAGTAACATTGGCCCCACCCATCGGGATACAGATAGAGCCTCATCTCCTGGGCCACAAATGCAAGATGCTTTCTTGACTCCTCTATCTAATAAAggtactgcacttacagctgggtaatagtagctgtttttattccactacgca Alignment from Spaln_aa2Genome TGGGAGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGACGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGACACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAG tttcccaaatttttggtaaatggattttcatgtcaaccatttttccccagTAGGTGAGCATATGTTGAAATCCCAGTCGGCTGACCCCTTCATCACCCCCGAAATGGATGCAGGCATTTCTAACATTCATCGAAGCCAGAGTGGACTTAGTAACATTGGCCCCACCCATCGGGATACAGATAGAGCCTCATCTCCTGGGCCACAAATGCAAGATGCTTTCTTGACTCCTCTATCTAATAAAGgtactgcacttacagctgggtaatagtagctgtttttattccactacgca Alignment from Spaln_nt2Genome TGGGAGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGACGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGACACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAG tttcccaaatttttggtaaatggattttcatgtcaaccatttttccccagTAGGTGAGCATATGTTGAAATCCCAGTCGGCTGACCCCTTCATCACCCCCGAAATGGATGCAGGCATTTCTAACATTCATCGAAGCCAGAGTGGACTTAGTAACATTGGCCCCACCCATCGGGATACAGATAGAGCCTCATCTCCTGGGCCACAAATGCAAGATGCTTTCTTGACTCCTCTATCTAATAAAGgtactgcacttacagctgggtaatagtagctgtttttattccactacgca Alignment from Pairagon TGGGAGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGACGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGACACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAG tttcccaaatttttggtaaatggattttcatgtcaaccatttttccccagTAGGTGAGCATATGTTGAAATCCCAGTCGGCTGACCCCTTCATCACCCCCGAAATGGATGCAGGCATTTCTAACATTCATCGAAGCCAGAGTGGACTTAGTAACATTGGCCCCACCCATCGGGATACAGATAGAGCCTCATCTCCTGGGCCACAAATGCAAGATGCTTTCTTGACTCCTCTATCTAATAAAGgtactgcacttacagctgggtaatagtagctgtttttattccactacgca Alignment from Exonerate_protein2genome TGGGAGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGACGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGACACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAG tttcccaaatttttggtaaatggattttcatgtcaaccatttttccccagTAGGTGAGCATATGTTGAAATCCCAGTCGGCTGACCCCTTCATCACCCCCGAAATGGATGCAGGCATTTCTAACATTCATCGAAGCCAGAGTGGACTTAGTAACATTGGCCCCACCCATCGGGATACAGATAGAGCCTCATCTCCTGGGCCACAAATGCAAGATGCTTTCTTGACTCCTCTATCTAATAAAGgtactgcacttacagctgggtaatagtagctgtttttattccactacgca Alignment from Exonerate_coding2genome TGGGAGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGACGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGACACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAG tttcccaaatttttggtaaatggattttcatgtcaaccatttttccccagTAGGTGAGCATATGTTGAAATCCCAGTCGGCTGACCCCTTCATCACCCCCGAAATGGATGCAGGCATTTCTAACATTCATCGAAGCCAGAGTGGACTTAGTAACATTGGCCCCACCCATCGGGATACAGATAGAGCCTCATCTCCTGGGCCACAAATGCAAGATGCTTTCTTGACTCCTCTATCTAATAAAGgtactgcacttacagctgggtaatagtagctgtttttattccactacgca Alignment from GeneWise TGGGAGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGACGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGACACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAG tttcccaaatttttggtaaatggattttcatgtcaaccatttttccccagTAGGTGAGCATATGTTGAAATCCCAGTCGGCTGACCCCTTCATCACCCCCGAAATGGATGCAGGCATTTCTAACATTCATCGAAGCCAGAGTGGACTTAGTAACATTGGCCCCACCCATCGGGATACAGATAGAGCCTCATCTCCTGGGCCACAAATGCAAGATGCTTTCTTGACTCCTCTATCTAATAAAGgtactgcacttacagctgggtaatagtagctgtttttattccactacgca #### Cabp2_ID290_5 --> 2 - 0 Original Alignment gtGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccgtgcactaacccaagccctctttgaattctttttttctttaaggtGGGGGGAAGGTTCACTTTGAAGTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGGGAAAGAGAACTTAAAGACGCTTTTAGGGAGgtatgtcttaggtggtgggtggcagtggctaaaggatttatagctcagta Alignment from CESAR gtGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccgtgcactaacccaagccctctttgaattctttttttctttaaggtGGGGGGAAGGTTCACTTTGAAGTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGGGAAAGAGAACTTAAAGACGCTTTTAGGGAGgtatgtcttaggtggtgggtggcagtggctaaaggatttatagctcagta Alignment from Spaln_aa2Genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccgtgcactaacccaagccctctttgaattctttttttctttaagGTGGGGGGAAGGTTCACTTTGAAGTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGGGAAAGAGAACTTAAAGACGCTTTTAGGGAGgtatgtcttaggtggtgggtggcagtggctaaaggatttatagctcagta Alignment from Spaln_nt2Genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccgtgcactaacccaagccctctttgaattctttttttctttaagGTGGGGGGAAGGTTCACTTTGAAGTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGGGAAAGAGAACTTAAAGACGCTTTTAGGGAGgtatgtcttaggtggtgggtggcagtggctaaaggatttatagctcagta Alignment from Pairagon GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccgtgcactaacccaagccctctttgaattctttttttctttaagGTGGGGGGAAGGTTCACTTTGAAGTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGGGAAAGAGAACTTAAAGACGCTTTTAGGGAGgtatgtcttaggtggtgggtggcagtggctaaaggatttatagctcagta Alignment from Exonerate_protein2genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccgtgcactaacccaagccctctttgaattctttttttctttaagGTGGGGGGAAGGTTCACTTTGAAGTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGGGAAAGAGAACTTAAAGACGCTTTTAGGGAGgtatgtcttaggtggtgggtggcagtggctaaaggatttatagctcagta Alignment from Exonerate_coding2genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccgtgcactaacccaagccctctttgaattctttttttctttaagGTGGGGGGAAGGTTCACTTTGAAGTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGGGAAAGAGAACTTAAAGACGCTTTTAGGGAGgtatgtcttaggtggtgggtggcagtggctaaaggatttatagctcagta Alignment from GeneWise GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccgtgcactaacccaagccctctttgaattctttttttctttaagGTGGGGGGAAGGTTCACTTTGAAGTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGGGAAAGAGAACTTAAAGACGCTTTTAGGGAGgtatgtcttaggtggtgggtggcagtggctaaaggatttatagctcagta #### Cacul1_ID13274_8 --> 1 - 1 Original Alignment aGGTGATCAGTCCCGGAAGAGAGCTGGAGATGAGTTGGCTTATa taaacaaggtgctgcatggtttccggtactgcctgtcccttctaccccaggCGA---CACTCCCGAAGGAGAGCTGGAGATGAGTTAGCATATagtaactgacactattttggtaagtttgtgaaataactcagcctctggaga Alignment from CESAR aGGTGATCAGTCCCGGAAGAGAGCTGGAGATGAGTTGGCTTATa taaacaaggtgctgcatggtttccggtactgcctgtcccttctaccccaggCGA---CACTCCCGAAGGAGAGCTGGAGATGAGTTAGCATATagtaactgacactattttggtaagtttgtgaaataactcagcctctggaga Alignment from Spaln_aa2Genome AGGTGATCAGTCCCGGAAGAGAGCTGGAGATGAGTTGGCTTATA taaacaaggtgctgcatggtttccggtactgcctgtcccttctaccccagGCGA---CACTCCCGAAGGAGAGCTGGAGATGAGTTAGCATATAgtaactgacactattttggtaagtttgtgaaataactcagcctctggaga Alignment from Spaln_nt2Genome GTGATCAGTCCCGGAAGAGAGCTGGAGATGAGTTGGCTTATA taaacaaggtgctgcatggtttccggtactgcctgtcccttctaccccagGCGA-CACTCCCGAAGGAGAGCTGGAGATGAGTTAGCATATAgtaactgacactattttggtaagtttgtgaaataactcagcctctggaga Alignment from Pairagon AGGTGATCAGTCCCGGAAGAGAGCTGGAGATGAGTTGGCTTATA taaacaaggtgctgcatggtttccggtactgcctgtcccttctaccccaggcgacactcccgaag------------------GAGAGCTGGAGATGAGTTAGCATATAgtaactgacactattttggtaagtttgtgaaataactcagcctctggaga Alignment from Exonerate_protein2genome AGGTGATCAGTCCCGGAAGAGAGCTGGAGATGAGTTGGCTTATA taaacaaggtgctgcatggtttccggtactgcctgtcccttctaccccagG---CGACACTCCCGAAGGAGAGCTGGAGATGAGTTAGCATATAgtaactgacactattttggtaagtttgtgaaataactcagcctctggaga Alignment from Exonerate_coding2genome AGGTGATCAGTCCCGGAAGAGAGCTGGAGATGAGTTGGCTTATAACAGT taaacaaggtgctgcatggtttccggtactgcctgtcccttctaccccagG---CGACACTCCCGAAGGAGAGCTGGAGATGAGTTAGCATATAGTAACtgacactattttggtaagtttgtgaaataactcagcctctggaga Alignment from GeneWise taaacaaggtgctgcatggtttccggtactgcctgtcccttctaccccaggcgacactcccgaaggagagctggagatgagttagcatatagtaactgacactattttggtaagtttgtgaaataactcagcctctggaga #### Cacul1_ID13280_3 --> 1 - 0 Original Alignment tTGTGTGTATAAGTGTGTGTGCCAGCAGCACTCAGAACAGATGTACAGTGATCTGATTAAAAAAATAACCAGCCACTTAGAGCGAGTCTCCAAGGAGCTGCAG agttggttgttatgaaatacagagagtgtctcttcatctctcttttaaagcTGTGTGTATAAGTGTGTGTGCCAGCAACATTCTGAACAAATGTACCGTGACTTGATAACAAAAATAACCAGTCACTTAGAGCGAGTTTCCAAGGAACTGCAAgtgagtagtggaatgtaccactgttcattgcttgacattgacagtatgtg Alignment from CESAR tTGTGTGTATAAGTGTGTGTGCCAGCAGCACTCAGAACAGATGTACAGTGATCTGATTAAAAAAATAACCAGCCACTTAGAGCGAGTCTCCAAGGAGCTGCAG agttggttgttatgaaatacagagagtgtctcttcatctctcttttaaagcTGTGTGTATAAGTGTGTGTGCCAGCAACATTCTGAACAAATGTACCGTGACTTGATAACAAAAATAACCAGTCACTTAGAGCGAGTTTCCAAGGAACTGCAAgtgagtagtggaatgtaccactgttcattgcttgacattgacagtatgtg Alignment from Spaln_aa2Genome TTGTGTGTATAAGTGTGTGTGCCAGCAGCACTCAGAACAGATGTACAGTGATCTGATTAAAAAAATAACCAGCCACTTAGAGCGAGTCTCCAAGGAGCTGCAG agttggttgttatgaaatacagagagtgtctcttcatctctcttttaaagCTGTGTGTATAAGTGTGTGTGCCAGCAACATTCTGAACAAATGTACCGTGACTTGATAACAAAAATAACCAGTCACTTAGAGCGAGTTTCCAAGGAACTGCAAgtgagtagtggaatgtaccactgttcattgcttgacattgacagtatgtg Alignment from Spaln_nt2Genome TTGTGTGTATAAGTGTGTGTGCCAGCAGCACTCAGAACAGATGTACAGTGATCTGATTAAAAAAATAACCAGCCACTTAGAGCGAGTCTCCAAGGAGCTGCAG agttggttgttatgaaatacagagagtgtctcttcatctctcttttaaagCTGTGTGTATAAGTGTGTGTGCCAGCAACATTCTGAACAAATGTACCGTGACTTGATAACAAAAATAACCAGTCACTTAGAGCGAGTTTCCAAGGAACTGCAAgtgagtagtggaatgtaccactgttcattgcttgacattgacagtatgtg Alignment from Pairagon TTGTGTGTATAAGTGTGTGTGCCAGCAGCACTCAGAACAGATGTACAGTGATCTGATTAAAAAAATAACCAGCCACTTAGAGCGAGTCTCCAAGGAGCTGCAG agttggttgttatgaaatacagagagtgtctcttcatctctcttttaaagCTGTGTGTATAAGTGTGTGTGCCAGCAACATTCTGAACAAATGTACCGTGACTTGATAACAAAAATAACCAGTCACTTAGAGCGAGTTTCCAAGGAACTGCAAgtgagtagtggaatgtaccactgttcattgcttgacattgacagtatgtg Alignment from Exonerate_protein2genome TTGTGTGTATAAGTGTGTGTGCCAGCAGCACTCAGAACAGATGTACAGTGATCTGATTAAAAAAATAACCAGCCACTTAGAGCGAGTCTCCAAGGAGCTGCAG agttggttgttatgaaatacagagagtgtctcttcatctctcttttaaagCTGTGTGTATAAGTGTGTGTGCCAGCAACATTCTGAACAAATGTACCGTGACTTGATAACAAAAATAACCAGTCACTTAGAGCGAGTTTCCAAGGAACTGCAAgtgagtagtggaatgtaccactgttcattgcttgacattgacagtatgtg Alignment from Exonerate_coding2genome TTGTGTGTATAAGTGTGTGTGCCAGCAGCACTCAGAACAGATGTACAGTGATCTGATTAAAAAAATAACCAGCCACTTAGAGCGAGTCTCCAAGGAGCTGCAG agttggttgttatgaaatacagagagtgtctcttcatctctcttttaaagCTGTGTGTATAAGTGTGTGTGCCAGCAACATTCTGAACAAATGTACCGTGACTTGATAACAAAAATAACCAGTCACTTAGAGCGAGTTTCCAAGGAACTGCAAgtgagtagtggaatgtaccactgttcattgcttgacattgacagtatgtg Alignment from GeneWise TTGTGTGTATAAGTGTGTGTGCCAGCAGCACTCAGAACAGATGTACAGTGATCTGATTAAAAAAATAACCAGCCACTTAGAGCGAGTCTCCAAGGAGCTGCAG agttggttgttatgaaatacagagagtgtctcttcatctctcttttaaagCTGTGTGTATAAGTGTGTGTGCCAGCAACATTCTGAACAAATGTACCGTGACTTGATAACAAAAATAACCAGTCACTTAGAGCGAGTTTCCAAGGAACTGCAAgtgagtagtggaatgtaccactgttcattgcttgacattgacagtatgtg #### Capn1_ID1362_14 --> 0 - 0 Original Alignment AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGAT ctaaatagctagtcaggttcttagcccctctatgcccactcttcctttagAAAGTTCTCTCTGAAGAAGAAATTGATGACAACTTCAAGACTTTGTTCAGCAAGTTGGCAGGGGATgtgagtaaagatagataagaagaataagtgacagttcctatgtagagaaa Alignment from CESAR AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGAT ctaaatagctagtcaggttcttagcccctctatgcccactcttcctttagAAAGTTCTCTCTGAAGAAGAAATTGATGACAACTTCAAGACTTTGTTCAGCAAGTTGGCAGGGGATgtgagtaaagatagataagaagaataagtgacagttcctatgtagagaaa Alignment from Spaln_aa2Genome AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGAT ctaaatagctagtcaggttcttagcccctctatgcccactcttcctttagAAAGTTCTCTCTGAAGAAGAAATTGATGACAACTTCAAGACTTTGTTCAGCAAGTTGGCAGGGGATgtgagtaaagatagataagaagaataagtgacagttcctatgtagagaaa Alignment from Spaln_nt2Genome AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGAT ctaaatagctagtcaggttcttagcccctctatgcccactcttcctttagAAAGTTCTCTCTGAAGAAGAAATTGATGACAACTTCAAGACTTTGTTCAGCAAGTTGGCAGGGGATgtgagtaaagatagataagaagaataagtgacagttcctatgtagagaaa Alignment from Pairagon AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGAT ctaaatagctagtcaggttcttagcccctctatgcccactcttcctttagAAAGTTCTCTCTGAAGAAGAAATTGATGACAACTTCAAGACTTTGTTCAGCAAGTTGGCAGGGGATgtgagtaaagatagataagaagaataagtgacagttcctatgtagagaaa Alignment from Exonerate_protein2genome AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGAT ctaaatagctagtcaggttcttagcccctctatgcccactcttcctttagAAAGTTCTCTCTGAAGAAGAAATTGATGACAACTTCAAGACTTTGTTCAGCAAGTTGGCAGGGGATgtgagtaaagatagataagaagaataagtgacagttcctatgtagagaaa Alignment from Exonerate_coding2genome AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGAT ctaaatagctagtcaggttcttagcccctctatgcccactcttcctttagAAAGTTCTCTCTGAAGAAGAAATTGATGACAACTTCAAGACTTTGTTCAGCAAGTTGGCAGGGGATgtgagtaaagatagataagaagaataagtgacagttcctatgtagagaaa Alignment from GeneWise AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGAT ctaaatagctagtcaggttcttagcccctctatgcccactcttcctttagAAAGTTCTCTCTGAAGAAGAAATTGATGACAACTTCAAGACTTTGTTCAGCAAGTTGGCAGGGGATgtgagtaaagatagataagaagaataagtgacagttcctatgtagagaaa #### Capn1_ID1370_6 --> 0 - 0 Original Alignment ATCTCCGATATCCGTGATTTAGAGGCTATTACTTTTAAGAACCTGGTGAGGGGCCATGCGTACTCTGTGACGGGCGCCAAGCAG tctctacgtaccttccagacagggactccgtgtaccttgtcttaacgtagATAACTGATTTCCATGATCTAGAGGCTATTACATTCAAAAACCTAGTGAGAGGTCATCCCTATTCTACAACAGGTGCCAAGCAGgtaagttctagcctactgagctcatgtggctcctgcatgtgagattgtag Alignment from CESAR ATCTCCGATATCCGTGATTTAGAGGCTATTACTTTTAAGAACCTGGTGAGGGGCCATGCGTACTCTGTGACGGGCGCCAAGCAG tctctacgtaccttccagacagggactccgtgtaccttgtcttaacgtagATAACTGATTTCCATGATCTAGAGGCTATTACATTCAAAAACCTAGTGAGAGGTCATCCCTATTCTACAACAGGTGCCAAGCAGgtaagttctagcctactgagctcatgtggctcctgcatgtgagattgtag Alignment from Spaln_aa2Genome ATCTCCGATATCCGTGATTTAGAGGCTATTACTTTTAAGAACCTGGTGAGGGGCCATGCGTACTCTGTGACGGGCGCCAAGCAG tctctacgtaccttccagacagggactccgtgtaccttgtcttaacgtagATAACTGATTTCCATGATCTAGAGGCTATTACATTCAAAAACCTAGTGAGAGGTCATCCCTATTCTACAACAGGTGCCAAGCAGgtaagttctagcctactgagctcatgtggctcctgcatgtgagattgtag Alignment from Spaln_nt2Genome ATCTCCGATATCCGTGATTTAGAGGCTATTACTTTTAAGAACCTGGTGAGGGGCCATGCGTACTCTGTGACGGGCGCCAAGCAG tctctacgtaccttccagacagggactccgtgtaccttgtcttaacgtagATAACTGATTTCCATGATCTAGAGGCTATTACATTCAAAAACCTAGTGAGAGGTCATCCCTATTCTACAACAGGTGCCAAGCAGgtaagttctagcctactgagctcatgtggctcctgcatgtgagattgtag Alignment from Pairagon ATCTCCGATATCCGTGATTTAGAGGCTATTACTTTTAAGAACCTGGTGAGGGGCCATGCGTACTCTGTGACGGGCGCCAAGCAG tctctacgtaccttccagacagggactccgtgtaccttgtcttaacgtagATAACTGATTTCCATGATCTAGAGGCTATTACATTCAAAAACCTAGTGAGAGGTCATCCCTATTCTACAACAGGTGCCAAGCAGgtaagttctagcctactgagctcatgtggctcctgcatgtgagattgtag Alignment from Exonerate_protein2genome ATCTCCGATATCCGTGATTTAGAGGCTATTACTTTTAAGAACCTGGTGAGGGGCCATGCGTACTCTGTGACGGGCGCCAAGCAG tctctacgtaccttccagacagggactccgtgtaccttgtcttaacgtagATAACTGATTTCCATGATCTAGAGGCTATTACATTCAAAAACCTAGTGAGAGGTCATCCCTATTCTACAACAGGTGCCAAGCAGgtaagttctagcctactgagctcatgtggctcctgcatgtgagattgtag Alignment from Exonerate_coding2genome tctctacgtaccttccagacagggactccgtgtaccttgtcttaacgtagataactgatttccatgatctagaggctattacattcaaaaacctagtgagaggtcatccctattctacaacaggtgccaagcaggtaagttctagcctactgagctcatgtggctcctgcatgtgagattgtag Alignment from GeneWise ATCTCCGATATCCGTGATTTAGAGGCTATTACTTTTAAGAACCTGGTGAGGGGCCATGCGTACTCTGTGACGGGCGCCAAGCAG tctctacgtaccttccagacagggactccgtgtaccttgtcttaacgtagATAACTGATTTCCATGATCTAGAGGCTATTACATTCAAAAACCTAGTGAGAGGTCATCCCTATTCTACAACAGGTGCCAAGCAGgtaagttctagcctactgagctcatgtggctcctgcatgtgagattgtag #### Capn1_ID1371_5 --> 1 - 0 Original Alignment aGTGAATGGCAGCTATGAGGCTCTTTCGGGAGGCTGCACCTCAGAGGCCTTCGAGGACTTTACCGGTGGGGTCACTGAGTGGTACGACCTGCAGAAGGCCCCCAGCGACCTCTACCAGATCATTCTAAAGGCCCTGGAACGAGGCTCCTTGCTGGGCTGCTCCATTAAT gagtcagagccgtaaatggttggcacttccctgccccaccccgcccccagaGTGAATGGCAGTTATGAGGCTCTTTCGGGGGGCTGCACCTCCAAAGCCTTTGATGACTTTGCTGGAGGGGTCACGGAATGGTATGAACTGCAGAAGGCCCCCAGTGACCTTTATCAGATCATTCTAAAGGCCTTAGAACCTGGCTCTTTATTGGGCTGCTCCATAAATgtaagagggagtggagggcataggtcccttaatcactttccgttctacaa Alignment from CESAR aGTGAATGGCAGCTATGAGGCTCTTTCGGGAGGCTGCACCTCAGAGGCCTTCGAGGACTTTACCGGTGGGGTCACTGAGTGGTACGACCTGCAGAAGGCCCCCAGCGACCTCTACCAGATCATTCTAAAGGCCCTGGAACGAGGCTCCTTGCTGGGCTGCTCCATTAAT gagtcagagccgtaaatggttggcacttccctgccccaccccgcccccagaGTGAATGGCAGTTATGAGGCTCTTTCGGGGGGCTGCACCTCCAAAGCCTTTGATGACTTTGCTGGAGGGGTCACGGAATGGTATGAACTGCAGAAGGCCCCCAGTGACCTTTATCAGATCATTCTAAAGGCCTTAGAACCTGGCTCTTTATTGGGCTGCTCCATAAATgtaagagggagtggagggcataggtcccttaatcactttccgttctacaa Alignment from Spaln_aa2Genome AGTGAATGGCAGCTATGAGGCTCTTTCGGGAGGCTGCACCTCAGAGGCCTTCGAGGACTTTACCGGTGGGGTCACTGAGTGGTACGACCTGCAGAAGGCCCCCAGCGACCTCTACCAGATCATTCTAAAGGCCCTGGAACGAGGCTCCTTGCTGGGCTGCTCCATTAAT gagtcagagccgtaaatggttggcacttccctgccccaccccgcccccagAGTGAATGGCAGTTATGAGGCTCTTTCGGGGGGCTGCACCTCCAAAGCCTTTGATGACTTTGCTGGAGGGGTCACGGAATGGTATGAACTGCAGAAGGCCCCCAGTGACCTTTATCAGATCATTCTAAAGGCCTTAGAACCTGGCTCTTTATTGGGCTGCTCCATAAATgtaagagggagtggagggcataggtcccttaatcactttccgttctacaa Alignment from Spaln_nt2Genome AGTGAATGGCAGCTATGAGGCTCTTTCGGGAGGCTGCACCTCAGAGGCCTTCGAGGACTTTACCGGTGGGGTCACTGAGTGGTACGACCTGCAGAAGGCCCCCAGCGACCTCTACCAGATCATTCTAAAGGCCCTGGAACGAGGCTCCTTGCTGGGCTGCTCCATTAAT gagtcagagccgtaaatggttggcacttccctgccccaccccgcccccagAGTGAATGGCAGTTATGAGGCTCTTTCGGGGGGCTGCACCTCCAAAGCCTTTGATGACTTTGCTGGAGGGGTCACGGAATGGTATGAACTGCAGAAGGCCCCCAGTGACCTTTATCAGATCATTCTAAAGGCCTTAGAACCTGGCTCTTTATTGGGCTGCTCCATAAATgtaagagggagtggagggcataggtcccttaatcactttccgttctacaa Alignment from Pairagon AGTGAATGGCAGCTATGAGGCTCTTTCGGGAGGCTGCACCTCAGAGGCCTTCGAGGACTTTACCGGTGGGGTCACTGAGTGGTACGACCTGCAGAAGGCCCCCAGCGACCTCTACCAGATCATTCTAAAGGCCCTGGAACGAGGCTCCTTGCTGGGCTGCTCCATTAAT gagtcagagccgtaaatggttggcacttccctgccccaccccgcccccagAGTGAATGGCAGTTATGAGGCTCTTTCGGGGGGCTGCACCTCCAAAGCCTTTGATGACTTTGCTGGAGGGGTCACGGAATGGTATGAACTGCAGAAGGCCCCCAGTGACCTTTATCAGATCATTCTAAAGGCCTTAGAACCTGGCTCTTTATTGGGCTGCTCCATAAATgtaagagggagtggagggcataggtcccttaatcactttccgttctacaa Alignment from Exonerate_protein2genome AGTGAATGGCAGCTATGAGGCTCTTTCGGGAGGCTGCACCTCAGAGGCCTTCGAGGACTTTACCGGTGGGGTCACTGAGTGGTACGACCTGCAGAAGGCCCCCAGCGACCTCTACCAGATCATTCTAAAGGCCCTGGAACGAGGCTCCTTGCTGGGCTGCTCCATTAAT gagtcagagccgtaaatggttggcacttccctgccccaccccgcccccagAGTGAATGGCAGTTATGAGGCTCTTTCGGGGGGCTGCACCTCCAAAGCCTTTGATGACTTTGCTGGAGGGGTCACGGAATGGTATGAACTGCAGAAGGCCCCCAGTGACCTTTATCAGATCATTCTAAAGGCCTTAGAACCTGGCTCTTTATTGGGCTGCTCCATAAATgtaagagggagtggagggcataggtcccttaatcactttccgttctacaa Alignment from Exonerate_coding2genome gagtcagagccgtaaatggttggcacttccctgccccaccccgcccccagagtgaatggcagttatgaggctctttcggggggctgcacctccaaagcctttgatgactttgctggaggggtcacggaatggtatgaactgcagaaggcccccagtgacctttatcagatcattctaaaggccttagaacctggctctttattgggctgctccataaatgtaagagggagtggagggcataggtcccttaatcactttccgttctacaa Alignment from GeneWise AGTGAATGGCAGCTATGAGGCTCTTTCGGGAGGCTGCACCTCAGAGGCCTTCGAGGACTTTACCGGTGGGGTCACTGAGTGGTACGACCTGCAGAAGGCCCCCAGCGACCTCTACCAGATCATTCTAAAGGCCCTGGAACGAGGCTCCTTGCTGGGCTGCTCCATTAAT gagtcagagccgtaaatggttggcacttccctgccccaccccgcccccagAGTGAATGGCAGTTATGAGGCTCTTTCGGGGGGCTGCACCTCCAAAGCCTTTGATGACTTTGCTGGAGGGGTCACGGAATGGTATGAACTGCAGAAGGCCCCCAGTGACCTTTATCAGATCATTCTAAAGGCCTTAGAACCTGGCTCTTTATTGGGCTGCTCCATAAATgtaagagggagtggagggcataggtcccttaatcactttccgttctacaa #### Capn1_ID1374_3 --> 2 - 0 Original Alignment ggGACTGTTGGCTCCTGGCTGCCATTGCCTCCCTCACCCTCAACGAGACTATTCTGCACCGAGTGGTTCCCTACGGCCAGAGCTTTCAGGATGGCTACGCTGGCATCTTTCATTTCCAG cctgccacagaccaaagagtacttttagccccattctgcttcctttctaggcGAATGTTGGCTCCTAGCCGCCATAGCTTCCCTTACCCTCAATGAGGCTATTTTGCACCGAGTGATTCCCTATGGCCAAAGCTTCCAGGATGGTTATGCTGGCATCTTCCATTTCCAAgtaagttcctcagtagtccccctttggaggggcattgtgaaggtacatcc Alignment from CESAR ggGACTGTTGGCTCCTGGCTGCCATTGCCTCCCTCACCCTCAACGAGACTATTCTGCACCGAGTGGTTCCCTACGGCCAGAGCTTTCAGGATGGCTACGCTGGCATCTTTCATTTCCAG cctgccacagaccaaagagtacttttagccccattctgcttcctttctaggcGAATGTTGGCTCCTAGCCGCCATAGCTTCCCTTACCCTCAATGAGGCTATTTTGCACCGAGTGATTCCCTATGGCCAAAGCTTCCAGGATGGTTATGCTGGCATCTTCCATTTCCAAgtaagttcctcagtagtccccctttggaggggcattgtgaaggtacatcc Alignment from Spaln_aa2Genome GGGACTGTTGGCTCCTGGCTGCCATTGCCTCCCTCACCCTCAACGAGACTATTCTGCACCGAGTGGTTCCCTACGGCCAGAGCTTTCAGGATGGCTACGCTGGCATCTTTCATTTCCAG cctgccacagaccaaagagtacttttagccccattctgcttcctttctagGCGAATGTTGGCTCCTAGCCGCCATAGCTTCCCTTACCCTCAATGAGGCTATTTTGCACCGAGTGATTCCCTATGGCCAAAGCTTCCAGGATGGTTATGCTGGCATCTTCCATTTCCAAgtaagttcctcagtagtccccctttggaggggcattgtgaaggtacatcc Alignment from Spaln_nt2Genome GGGACTGTTGGCTCCTGGCTGCCATTGCCTCCCTCACCCTCAACGAGACTATTCTGCACCGAGTGGTTCCCTACGGCCAGAGCTTTCAGGATGGCTACGCTGGCATCTTTCATTTCCAG cctgccacagaccaaagagtacttttagccccattctgcttcctttctagGCGAATGTTGGCTCCTAGCCGCCATAGCTTCCCTTACCCTCAATGAGGCTATTTTGCACCGAGTGATTCCCTATGGCCAAAGCTTCCAGGATGGTTATGCTGGCATCTTCCATTTCCAAgtaagttcctcagtagtccccctttggaggggcattgtgaaggtacatcc Alignment from Pairagon GGGACTGTTGGCTCCTGGCTGCCATTGCCTCCCTCACCCTCAACGAGACTATTCTGCACCGAGTGGTTCCCTACGGCCAGAGCTTTCAGGATGGCTACGCTGGCATCTTTCATTTCCAG cctgccacagaccaaagagtacttttagccccattctgcttcctttctagGCGAATGTTGGCTCCTAGCCGCCATAGCTTCCCTTACCCTCAATGAGGCTATTTTGCACCGAGTGATTCCCTATGGCCAAAGCTTCCAGGATGGTTATGCTGGCATCTTCCATTTCCAAgtaagttcctcagtagtccccctttggaggggcattgtgaaggtacatcc Alignment from Exonerate_protein2genome GGGACTGTTGGCTCCTGGCTGCCATTGCCTCCCTCACCCTCAACGAGACTATTCTGCACCGAGTGGTTCCCTACGGCCAGAGCTTTCAGGATGGCTACGCTGGCATCTTTCATTTCCAG cctgccacagaccaaagagtacttttagccccattctgcttcctttctagGCGAATGTTGGCTCCTAGCCGCCATAGCTTCCCTTACCCTCAATGAGGCTATTTTGCACCGAGTGATTCCCTATGGCCAAAGCTTCCAGGATGGTTATGCTGGCATCTTCCATTTCCAAgtaagttcctcagtagtccccctttggaggggcattgtgaaggtacatcc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGGACTGTTGGCTCCTGGCTGCCATTGCCTCCCTCACCCTCAACGAGACTATTCTGCACCGAGTGGTTCCCTACGGCCAGAGCTTTCAGGATGGCTACGCTGGCATCTTTCATTTCCAG cctgccacagaccaaagagtacttttagccccattctgcttcctttctagGCGAATGTTGGCTCCTAGCCGCCATAGCTTCCCTTACCCTCAATGAGGCTATTTTGCACCGAGTGATTCCCTATGGCCAAAGCTTCCAGGATGGTTATGCTGGCATCTTCCATTTCCAAgtaagttcctcagtagtccccctttggaggggcattgtgaaggtacatcc #### Capn1_ID1376_2 --> 0 - 1 Original Alignment GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGg tttagaggcacatcaaagggggcccatgcccttcatttctcatttcatagGAATTGATGTCAAACCCCCAATTCATTGTAGACGGAGCCACCCGAACAGACATCTGCCAGGGAGCACTAggtgagtaaacatccctaggcatggggtactgtgtgacttgagctatgttt Alignment from CESAR GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGg tttagaggcacatcaaagggggcccatgcccttcatttctcatttcatagGAATTGATGTCAAACCCCCAATTCATTGTAGACGGAGCCACCCGAACAGACATCTGCCAGGGAGCACTAggtgagtaaacatccctaggcatggggtactgtgtgacttgagctatgttt Alignment from Spaln_aa2Genome GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG tttagaggcacatcaaagggggcccatgcccttcatttctcatttcatagGAATTGATGTCAAACCCCCAATTCATTGTAGACGGAGCCACCCGAACAGACATCTGCCAGGGAGCACTAGgtgagtaaacatccctaggcatggggtactgtgtgacttgagctatgttt Alignment from Spaln_nt2Genome GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG tttagaggcacatcaaagggggcccatgcccttcatttctcatttcatagGAATTGATGTCAAACCCCCAATTCATTGTAGACGGAGCCACCCGAACAGACATCTGCCAGGGAGCACTAGgtgagtaaacatccctaggcatggggtactgtgtgacttgagctatgttt Alignment from Pairagon GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG tttagaggcacatcaaagggggcccatgcccttcatttctcatttcatagGAATTGATGTCAAACCCCCAATTCATTGTAGACGGAGCCACCCGAACAGACATCTGCCAGGGAGCACTAGgtgagtaaacatccctaggcatggggtactgtgtgacttgagctatgttt Alignment from Exonerate_protein2genome GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG tttagaggcacatcaaagggggcccatgcccttcatttctcatttcatagGAATTGATGTCAAACCCCCAATTCATTGTAGACGGAGCCACCCGAACAGACATCTGCCAGGGAGCACTAGgtgagtaaacatccctaggcatggggtactgtgtgacttgagctatgttt Alignment from Exonerate_coding2genome tttagaggcacatcaaagggggcccatgcccttcatttctcatttcataggaattgatgtcaaacccccaattcattgtagacggagccacccgaacagacatctgccagggagcactaggtgagtaaacatccctaggcatggggtactgtgtgacttgagctatgttt Alignment from GeneWise GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG tttagaggcacatcaaagggggcccatgcccttcatttctcatttcatagGAATTGATGTCAAACCCCCAATTCATTGTAGACGGAGCCACCCGAACAGACATCTGCCAGGGAGCACTAGgtgagtaaacatccctaggcatggggtactgtgtgacttgagctatgttt #### Carns1_ID384_8 --> 2 - 0 Original Alignment gcGTGGACTTAGTTCTCACGGTGATCGGACGCACGCTGACGCCCGTGGTCCTTAAGCTGAACAGTGGCCTGTGCCTAGAGGCCTGCGGCGCGCTCGAGGGGCTGTGGGCCGTGCCACGCCTAAGACGCTCAGCTGAGGAGGCAGCGGCAGCGCCGCTGGTGGAGACTATGCTGCGGCGCTCAGGGCGCCACCTCATGGACGGCAAGCAGCTGCTGGTGATCGGCGCCGGCGGCGTCAGCAAGAAGTTCGTGTGGGAGGCGGCGCGGGACTACGGACTGACG tttgtttgtagctatgtgttggaagctcttgcttatcttgaaataactaggtGTGGATTTAGTTCTTGCAGTGATTGGTCGTACACTAACACCCGTGGTCCTTAAGCTAAATTGTGGATCATGCCTAGAGGCCTGTGGTGCACTTGAAGGGCGATGGGCTGTCCCACACTTACGACGATCAGCAGAGGATGCAGCAGCAGCACCATTGGTTGAGACCATGCTGAGGCATTCAGGGCGCCACTTAATGGATGGCAAGCAGCTGCTGGTGATTGGGACTGAGAGTGTTGGCAAGAAGTTTTTGTGGGAAGTAGCACGAGATTACAGACTCACTgtgggtgagaaatcagcataagatgggtcagtcccctagaggaaccccac Alignment from CESAR gcGTGGACTTAGTTCTCACGGTGATCGGACGCACGCTGACGCCCGTGGTCCTTAAGCTGAACAGTGGCCTGTGCCTAGAGGCCTGCGGCGCGCTCGAGGGGCTGTGGGCCGTGCCACGCCTAAGACGCTCAGCTGAGGAGGCAGCGGCAGCGCCGCTGGTGGAGACTATGCTGCGGCGCTCAGGGCGCCACCTCATGGACGGCAAGCAGCTGCTGGTGATCGGCGCCGGCGGCGTCAGCAAGAAGTTCGTGTGGGAGGCGGCGCGGGACTACGGACTGACG tttgtttgtagctatgtgttggaagctcttgcttatcttgaaataactaggtGTGGATTTAGTTCTTGCAGTGATTGGTCGTACACTAACACCCGTGGTCCTTAAGCTAAATTGTGGATCATGCCTAGAGGCCTGTGGTGCACTTGAAGGGCGATGGGCTGTCCCACACTTACGACGATCAGCAGAGGATGCAGCAGCAGCACCATTGGTTGAGACCATGCTGAGGCATTCAGGGCGCCACTTAATGGATGGCAAGCAGCTGCTGGTGATTGGGACTGAGAGTGTTGGCAAGAAGTTTTTGTGGGAAGTAGCACGAGATTACAGACTCACTgtgggtgagaaatcagcataagatgggtcagtcccctagaggaaccccac Alignment from Spaln_aa2Genome GCGTGGACTTAGTTCTCACGGTGATCGGACGCACGCTGACGCCCGTGGTCCTTAAGCTGAACAGTGGCCTGTGCCTAGAGGCCTGCGGCGCGCTCGAGGGGCTGTGGGCCGTGCCACGCCTAAGACGCTCAGCTGAGGAGGCAGCGGCAGCGCCGCTGGTGGAGACTATGCTGCGGCGCTCAGGGCGCCACCTCATGGACGGCAAGCAGCTGCTGGTGATCGGCGCCGGCGGCGTCAGCAAGAAGTTCGTGTGGGAGGCGGCGCGGGACTACGGACTGACG tttgtttgtagctatgtgttggaagctcttgcttatcttgaaataactagGTGTGGATTTAGTTCTTGCAGTGATTGGTCGTACACTAACACCCGTGGTCCTTAAGCTAAATTGTGGATCATGCCTAGAGGCCTGTGGTGCACTTGAAGGGCGATGGGCTGTCCCACACTTACGACGATCAGCAGAGGATGCAGCAGCAGCACCATTGGTTGAGACCATGCTGAGGCATTCAGGGCGCCACTTAATGGATGGCAAGCAGCTGCTGGTGATTGGGACTGAGAGTGTTGGCAAGAAGTTTTTGTGGGAAGTAGCACGAGATTACAGACTCACTgtgggtgagaaatcagcataagatgggtcagtcccctagaggaaccccac Alignment from Spaln_nt2Genome GCGTGGACTTAGTTCTCACGGTGATCGGACGCACGCTGACGCCCGTGGTCCTTAAGCTGAACAGTGGCCTGTGCCTAGAGGCCTGCGGCGCGCTCGAGGGGCTGTGGGCCGTGCCACGCCTAAGACGCTCAGCTGAGGAGGCAGCGGCAGCGCCGCTGGTGGAGACTATGCTGCGGCGCTCAGGGCGCCACCTCATGGACGGCAAGCAGCTGCTGGTGATCGGCGCCGGCGGCGTCAGCAAGAAGTTCGTGTGGGAGGCGGCGCGGGACTACGGACTGACG tttgtttgtagctatgtgttggaagctcttgcttatcttgaaataactagGTGTGGATTTAGTTCTTGCAGTGATTGGTCGTACACTAACACCCGTGGTCCTTAAGCTAAATTGTGGATCATGCCTAGAGGCCTGTGGTGCACTTGAAGGGCGATGGGCTGTCCCACACTTACGACGATCAGCAGAGGATGCAGCAGCAGCACCATTGGTTGAGACCATGCTGAGGCATTCAGGGCGCCACTTAATGGATGGCAAGCAGCTGCTGGTGATTGGGACTGAGAGTGTTGGCAAGAAGTTTTTGTGGGAAGTAGCACGAGATTACAGACTCACTgtgggtgagaaatcagcataagatgggtcagtcccctagaggaaccccac Alignment from Pairagon GCGTGGACTTAGTTCTCACGGTGATCGGACGCACGCTGACGCCCGTGGTCCTTAAGCTGAACAGTGGCCTGTGCCTAGAGGCCTGCGGCGCGCTCGAGGGGCTGTGGGCCGTGCCACGCCTAAGACGCTCAGCTGAGGAGGCAGCGGCAGCGCCGCTGGTGGAGACTATGCTGCGGCGCTCAGGGCGCCACCTCATGGACGGCAAGCAGCTGCTGGTGATCGGCGCCGGCGGCGTCAGCAAGAAGTTCGTGTGGGAGGCGGCGCGGGACTACGGACTGACG tttgtttgtagctatgtgttggaagctcttgcttatcttgaaataactagGTGTGGATTTAGTTCTTGCAGTGATTGGTCGTACACTAACACCCGTGGTCCTTAAGCTAAATTGTGGATCATGCCTAGAGGCCTGTGGTGCACTTGAAGGGCGATGGGCTGTCCCACACTTACGACGATCAGCAGAGGATGCAGCAGCAGCACCATTGGTTGAGACCATGCTGAGGCATTCAGGGCGCCACTTAATGGATGGCAAGCAGCTGCTGGTGATTGGGACTGAGAGTGTTGGCAAGAAGTTTTTGTGGGAAGTAGCACGAGATTACAGACTCACTgtgggtgagaaatcagcataagatgggtcagtcccctagaggaaccccac Alignment from Exonerate_protein2genome GCGTGGACTTAGTTCTCACGGTGATCGGACGCACGCTGACGCCCGTGGTCCTTAAGCTGAACAGTGGCCTGTGCCTAGAGGCCTGCGGCGCGCTCGAGGGGCTGTGGGCCGTGCCACGCCTAAGACGCTCAGCTGAGGAGGCAGCGGCAGCGCCGCTGGTGGAGACTATGCTGCGGCGCTCAGGGCGCCACCTCATGGACGGCAAGCAGCTGCTGGTGATCGGCGCCGGCGGCGTCAGCAAGAAGTTCGTGTGGGAGGCGGCGCGGGACTACGGACTGACG tttgtttgtagctatgtgttggaagctcttgcttatcttgaaataactagGTGTGGATTTAGTTCTTGCAGTGATTGGTCGTACACTAACACCCGTGGTCCTTAAGCTAAATTGTGGATCATGCCTAGAGGCCTGTGGTGCACTTGAAGGGCGATGGGCTGTCCCACACTTACGACGATCAGCAGAGGATGCAGCAGCAGCACCATTGGTTGAGACCATGCTGAGGCATTCAGGGCGCCACTTAATGGATGGCAAGCAGCTGCTGGTGATTGGGACTGAGAGTGTTGGCAAGAAGTTTTTGTGGGAAGTAGCACGAGATTACAGACTCACTgtgggtgagaaatcagcataagatgggtcagtcccctagaggaaccccac Alignment from Exonerate_coding2genome GCGTGGACTTAGTTCTCACGGTGATCGGACGCACGCTGACGCCCGTGGTCCTTAAGCTGAACAGTGGCCTGTGCCTAGAGGCCTGCGGCGCGCTCGAGGGGCTGTGGGCCGTGCCACGCCTAAGACGCTCAGCTGAGGAGGCAGCGGCAGCGCCGCTGGTGGAGACTATGCTGCGGCGCTCAGGGCGCCACCTCATGGACGGCAAGCAGCTGCTGGTGATCGGCGCCGGCGGCGTCAGCAAGAAGTTCGTGTGGGAGGCGGCGCGGGACTACGGACTGACG tttgtttgtagctatgtgttggaagctcttgcttatcttgaaataactagGTGTGGATTTAGTTCTTGCAGTGATTGGTCGTACACTAACACCCGTGGTCCTTAAGCTAAATTGTGGATCATGCCTAGAGGCCTGTGGTGCACTTGAAGGGCGATGGGCTGTCCCACACTTACGACGATCAGCAGAGGATGCAGCAGCAGCACCATTGGTTGAGACCATGCTGAGGCATTCAGGGCGCCACTTAATGGATGGCAAGCAGCTGCTGGTGATTGGGACTGAGAGTGTTGGCAAGAAGTTTTTGTGGGAAGTAGCACGAGATTACAGACTCACTgtgggtgagaaatcagcataagatgggtcagtcccctagaggaaccccac Alignment from GeneWise GCGTGGACTTAGTTCTCACGGTGATCGGACGCACGCTGACGCCCGTGGTCCTTAAGCTGAACAGTGGCCTGTGCCTAGAGGCCTGCGGCGCGCTCGAGGGGCTGTGGGCCGTGCCACGCCTAAGACGCTCAGCTGAGGAGGCAGCGGCAGCGCCGCTGGTGGAGACTATGCTGCGGCGCTCAGGGCGCCACCTCATGGACGGCAAGCAGCTGCTGGTGATCGGCGCCGGCGGCGTCAGCAAGAAGTTCGTGTGGGAGGCGGCGCGGGACTACGGACTGACG tttgtttgtagctatgtgttggaagctcttgcttatcttgaaataactagGTGTGGATTTAGTTCTTGCAGTGATTGGTCGTACACTAACACCCGTGGTCCTTAAGCTAAATTGTGGATCATGCCTAGAGGCCTGTGGTGCACTTGAAGGGCGATGGGCTGTCCCACACTTACGACGATCAGCAGAGGATGCAGCAGCAGCACCATTGGTTGAGACCATGCTGAGGCATTCAGGGCGCCACTTAATGGATGGCAAGCAGCTGCTGGTGATTGGGACTGAGAGTGTTGGCAAGAAGTTTTTGTGGGAAGTAGCACGAGATTACAGACTCACTgtgggtgagaaatcagcataagatgggtcagtcccctagaggaaccccac #### Carns1_ID385_7 --> 0 - 1 Original Alignment GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCg accttagacggcttcttaccagccagccacatcctcttcctgtcccccagATAGTGTGTGGTGTGGGTTATGGGGACCGA---GTACGACAACATTACACTGTTCCAAGAACACTGAGGGTGGCACTG---CAGTGTGGCCTGGAAGACGGTGCACAGGTGGCACTTCTAGAACAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTTGAAGCTGGGTTGCATGTGGAGCAGCATGGTGGC---CAAGTGCACACTGACTTCCTTggtacggtcggatgggtaagggggccctgtgatgcctctgtttttgactgt Alignment from CESAR GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCg accttagacggcttcttaccagccagccacatcctcttcctgtcccccagATAGTGTGTGGTGTGGGTTATGGGGACCGA---GTACGACAACATTACACTGTTCCAAGAACACTGAGGGTGGCACTG---CAGTGTGGCCTGGAAGACGGTGCACAGGTGGCACTTCTAGAACAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTTGAAGCTGGGTTGCATGTGGAGCAGCATGGTGGC---CAAGTGCACACTGACTTCCTTggtacggtcggatgggtaagggggccctgtgatgcctctgtttttgactgt Alignment from Spaln_aa2Genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG accttagacggcttcttaccagccagccacatcctcttcctgtcccccagATAGTGTGTGGTGTGGGTTATGGGGACCGA---GTACGACAACATTACACTGTTCCAAGAACACTGAGGGTGGCACTG---CAGTGTGGCCTGGAAGACGGTGCACAGGTGGCACTTCTAGAACAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTTGAAGCTGGGTTGCATGTGGAGCAGCATGGTGGC---CAAGTGCACACTGACTTCCTTGgtacggtcggatgggtaagggggccctgtgatgcctctgtttttgactgt Alignment from Spaln_nt2Genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG accttagacggcttcttaccagccagccacatcctcttcctgtcccccagATAGTGTGTGGTGTGGGTTATGGGGACCGA---GTACGACAACATTACACTGTTCCAAGAACACTGAGGGTGGCACTG---CAGTGTGGCCTGGAAGACGGTGCACAGGTGGCACTTCTAGAACAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTTGAAGCTGGGTTGCATGTGGAGCAGCATGGTGG---CCAAGTGCACACTGACTTCCTTGgtacggtcggatgggtaagggggccctgtgatgcctctgtttttgactgt Alignment from Pairagon GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG accttagacggcttcttaccagccagccacatcctcttcctgtcccccagATAGTGTGTGGTGTGGGTTATGGGGACCGA---GTACGACAACATTACACTGTTCCAAGAACACTGAGGGTGGCACTG---CAGTGTGGCCTGGAAGACGGTGCACAGGTGGCACTTCTAGAACAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTTGAAGCTGGGTTGCATGTGGAGCAGCATGGTG---GCCAAGTGCACACTGACTTCCTTGgtacggtcggatgggtaagggggccctgtgatgcctctgtttttgactgt Alignment from Exonerate_protein2genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG accttagacggcttcttaccagccagccacatcctcttcctgtcccccagATAGTGTGTGGTGTGGGTTATGGGGACCGA---GTACGACAACATTACACTGTTCCAAGAACACTGAGGGTGGCACTG---CAGTGTGGCCTGGAAGACGGTGCACAGGTGGCACTTCTAGAACAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTTGAAGCTGGGTTGCATGTGGAGCAGCATGGTGGC---CAAGTGCACACTGACTTCCTTGgtacggtcggatgggtaagggggccctgtgatgcctctgtttttgactgt Alignment from Exonerate_coding2genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG accttagacggcttcttaccagccagccacatcctcttcctgtcccccagATAGTGTGTGGTGTGGGTTATGGGGACCGA---GTACGACAACATTACACTGTTCCAAGAACACTGAGGGTGGCACTG---CAGTGTGGCCTGGAAGACGGTGCACAGGTGGCACTTCTAGAACAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTTGAAGCTGGGTTGCATGTGGAGCAGCATGGTGGC---CAAGTGCACACTGACTTCCTTGgtacggtcggatgggtaagggggccctgtgatgcctctgtttttgactgt Alignment from GeneWise GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG accttagacggcttcttaccagccagccacatcctcttcctgtcccccagATAGTGTGTGGTGTGGGTTATGGGGACCGA---GTACGACAACATTACACTGTTCCAAGAACACTGAGGGTGGCACTG---CAGTGTGGCCTGGAAGACGGTGCACAGGTGGCACTTCTAGAACAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTTGAAGCTGGGTTGCATGTGGAGCAGCATGGTGGC---CAAGTGCACACTGACTTCCTTGgtacggtcggatgggtaagggggccctgtgatgcctctgtttttgactgt #### Carns1_ID390_2 --> 0 - 1 Original Alignment CTCTGCCTGGATCCACTGGGTACGGAGTGGGACTCCAAGGACCTGGATGGAAAGGAAGAACCATGGAAAAGCGGT---GCTGGCCTGCCACCCACAGGCTGCTTCCCTGGGCCCTGGCGCCAGGATATCAGCCTGGATTGCAAGGGCTCCCCGGAAGAGACTGAGGCTCGGGCCTGGACTGTGTACTACTACGGTCTCCTTCAGAGTTGTCTGCAGCAAGCTGGCCTTCCTGAGACCCAGGATCGCAGCCAGGCACCTCGTACAg tcaaacctgctccatcaagactcacctactgtgccccatccaaccatcagCTTTGCTTAGATCCACTTGGTACGGGGTGGGATTCTAAGGACCTGGATGGAAAAGAAGAGCCATGGAAAAGTGGCGTTGCAGGTTCGCCATCAACTGGGTGCTACCCTGGACCTTGGCGACAAGATATCAGCCTAGATTGCAAAGGATCTCCTGAAGAGGCTGAAACCCAGGCCTGGACTGTG---TATTATGGT---CTCCAGAGTTGTCTGCAGCATGCAAGCCTTCCAGAGACCCAGGATCGCAGCCAGGCACCTCATACAggtaagtacagatactacagaatagccctctggaggacccaaacaaagaca Alignment from CESAR CTCTGCCTGGATCCACTGGGTACGGAGTGGGACTCCAAGGACCTGGATGGAAAGGAAGAACCATGGAAAAGCGGT---GCTGGCCTGCCACCCACAGGCTGCTTCCCTGGGCCCTGGCGCCAGGATATCAGCCTGGATTGCAAGGGCTCCCCGGAAGAGACTGAGGCTCGGGCCTGGACTGTGTACTACTACGGTCTCCTTCAGAGTTGTCTGCAGCAAGCTGGCCTTCCTGAGACCCAGGATCGCAGCCAGGCACCTCGTACAg tcaaacctgctccatcaagactcacctactgtgccccatccaaccatcagCTTTGCTTAGATCCACTTGGTACGGGGTGGGATTCTAAGGACCTGGATGGAAAAGAAGAGCCATGGAAAAGTGGCGTTGCAGGTTCGCCATCAACTGGGTGCTACCCTGGACCTTGGCGACAAGATATCAGCCTAGATTGCAAAGGATCTCCTGAAGAGGCTGAAACCCAGGCCTGGACTGTG---TATTATGGTCTC---CAGAGTTGTCTGCAGCATGCAAGCCTTCCAGAGACCCAGGATCGCAGCCAGGCACCTCATACAggtaagtacagatactacagaatagccctctggaggacccaaacaaagaca Alignment from Spaln_aa2Genome CTCTGCCTGGATCCACTGGGTACGGAGTGGGACTCCAAGGACCTGGATGGAAAGGAAGAACCATGGAAAAGCGGT---GCTGGCCTGCCACCCACAGGCTGCTTCCCTGGGCCCTGGCGCCAGGATATCAGCCTGGATTGCAAGGGCTCCCCGGAAGAGACTGAGGCTCGGGCCTGGACTGTGTACTACTACGGTCTCCTTCAGAGTTGTCTGCAGCAAGCTGGCCTTCCTGAGACCCAGGATCGCAGCCAGGCACCTCGTACAG tcaaacctgctccatcaagactcacctactgtgccccatccaaccatcagCTTTGCTTAGATCCACTTGGTACGGGGTGGGATTCTAAGGACCTGGATGGAAAAGAAGAGCCATGGAAAAGTGGCGTTGCAGGTTCGCCATCAACTGGGTGCTACCCTGGACCTTGGCGACAAGATATCAGCCTAGATTGCAAAGGATCTCCTGAAGAGGCTGAAACCCAGGCCTGGACTGTGTATTAT------GGTCTCCAGAGTTGTCTGCAGCATGCAAGCCTTCCAGAGACCCAGGATCGCAGCCAGGCACCTCATACAGgtaagtacagatactacagaatagccctctggaggacccaaacaaagaca Alignment from Spaln_nt2Genome ATGCTCTGCCTGGATCCACTGGGTACGGAGTGGGACTCCAAGGACCTGGATGGAAAGGAAGAACCATGGAAAAGCGG---TGCTGGCCTGCCACCCACAGGCTGCTTCCCTGGGCCCTGGCGCCAGGATATCAGCCTGGATTGCAAGGGCTCCCCGGAAGAGACTGAGGCTCGGGCCTGGACTGTGTACTACTACGGTCTCCTTCAGAGTTGTCTGCAGCAAGCTGGCCTTCCTGAGACCCAGGATCGCAGCCAGGCACCTCGTACAG tcaaacctgctccatcaagactcacctactgtgccccatccaaccatCAGCTTTGCTTAGATCCACTTGGTACGGGGTGGGATTCTAAGGACCTGGATGGAAAAGAAGAGCCATGGAAAAGTGGCGTTGCAGGTTCGCCATCAACTGGGTGCTACCCTGGACCTTGGCGACAAGATATCAGCCTAGATTGCAAAGGATCTCCTGAAGAGGCTGAAACCCAGGCCTGGACTGTG---TATTATGGTCTC---CAGAGTTGTCTGCAGCATGCAAGCCTTCCAGAGACCCAGGATCGCAGCCAGGCACCTCATACAGgtaagtacagatactacagaatagccctctggaggacccaaacaaagaca Alignment from Pairagon ATGCTCTGCCTGGATCCACTGGGTACGGAGTGGGACTCCAAGGACCTGGATGGAAAGGAAGAACCATGGAAAAGCGG---TGCTGGCCTGCCACCCACAGGCTGCTTCCCTGGGCCCTGGCGCCAGGATATCAGCCTGGATTGCAAGGGCTCCCCGGAAGAGACTGAGGCTCGGGCCTGGACTGTGTACTACTACGGTCTCCTTCAGAGTTGTCTGCAGCAAGCTGGCCTTCCTGAGACCCAGGATCGCAGCCAGGCACCTCGTACAG tcaaacctgctccatcaagactcacctactgtgccccatccaaccatCAGCTTTGCTTAGATCCACTTGGTACGGGGTGGGATTCTAAGGACCTGGATGGAAAAGAAGAGCCATGGAAAAGTGGCGTTGCAGGTTCGCCATCAACTGGGTGCTACCCTGGACCTTGGCGACAAGATATCAGCCTAGATTGCAAAGGATCTCCTGAAGAGGCTGAAACCCAGGCCTGGACTGTG---TATTATGGTCTC---CAGAGTTGTCTGCAGCATGCAAGCCTTCCAGAGACCCAGGATCGCAGCCAGGCACCTCATACAGgtaagtacagatactacagaatagccctctggaggacccaaacaaagaca Alignment from Exonerate_protein2genome ATGCTCTGCCTGGATCCACTGGGTACGGAGTGGGACTCCAAGGACCTGGATGGAAAGGAAGAACCATGGAAAAGCGGT---GCTGGCCTGCCACCCACAGGCTGCTTCCCTGGGCCCTGGCGCCAGGATATCAGCCTGGATTGCAAGGGCTCCCCGGAAGAGACTGAGGCTCGGGCCTGGACTGTGTACTACTACGGTCTCCTTCAGAGTTGTCTGCAGCAAGCTGGCCTTCCTGAGACCCAGGATCGCAGCCAGGCACCTCGTACAG tcaaacctgctccatcaagactcacctactgtgccccatccaaccatCAGCTTTGCTTAGATCCACTTGGTACGGGGTGGGATTCTAAGGACCTGGATGGAAAAGAAGAGCCATGGAAAAGTGGCGTTGCAGGTTCGCCATCAACTGGGTGCTACCCTGGACCTTGGCGACAAGATATCAGCCTAGATTGCAAAGGATCTCCTGAAGAGGCTGAAACCCAGGCCTGGACTGTGTATTATGGT------CTCCAGAGTTGTCTGCAGCATGCAAGCCTTCCAGAGACCCAGGATCGCAGCCAGGCACCTCATACAGgtaagtacagatactacagaatagccctctggaggacccaaacaaagaca Alignment from Exonerate_coding2genome ATGCTCTGCCTGGATCCACTGGGTACGGAGTGGGACTCCAAGGACCTGGATGGAAAGGAAGAACCATGGAAAAGCGGT---GCTGGCCTGCCACCCACAGGCTGCTTCCCTGGGCCCTGGCGCCAGGATATCAGCCTGGATTGCAAGGGCTCCCCGGAAGAGACTGAGGCTCGGGCCTGGACTGTGTACTACTACGGTCTCCTTCAGAGTTGTCTGCAGCAAGCTGGCCTTCCTGAGACCCAGGATCGCAGCCAGGCACCTCGTACAG tcaaacctgctccatcaagactcacctactgtgccccatccaaccatCAGCTTTGCTTAGATCCACTTGGTACGGGGTGGGATTCTAAGGACCTGGATGGAAAAGAAGAGCCATGGAAAAGTGGCGTTGCAGGTTCGCCATCAACTGGGTGCTACCCTGGACCTTGGCGACAAGATATCAGCCTAGATTGCAAAGGATCTCCTGAAGAGGCTGAAACCCAGGCCTGGACTGTGTATTATGGT------CTCCAGAGTTGTCTGCAGCATGCAAGCCTTCCAGAGACCCAGGATCGCAGCCAGGCACCTCATACAGgtaagtacagatactacagaatagccctctggaggacccaaacaaagaca Alignment from GeneWise ATGCTCTGCCTGGATCCACTGGGTACGGAGTGGGACTCCAAGGACCTGGATGGAAAGGAAGAACCATGGAAAAGCGGT---GCTGGCCTGCCACCCACAGGCTGCTTCCCTGGGCCCTGGCGCCAGGATATCAGCCTGGATTGCAAGGGCTCCCCGGAAGAGACTGAGGCTCGGGCCTGGACTGTGTACTACTACGGTCTCCTTCAGAGTTGTCTGCAGCAAGCTGGCCTTCCTGAGACCCAGGATCGCAGCCAGGCACCTCGTACAG tcaaacctgctccatcaagactcacctactgtgccccatccaaccatCAGCTTTGCTTAGATCCACTTGGTACGGGGTGGGATTCTAAGGACCTGGATGGAAAAGAAGAGCCATGGAAAAGTGGCGTTGCAGGTTCGCCATCAACTGGGTGCTACCCTGGACCTTGGCGACAAGATATCAGCCTAGATTGCAAAGGATCTCCTGAAGAGGCTGAAACCCAGGCCTGGACTGTGTATTATGGT------CTCCAGAGTTGTCTGCAGCATGCAAGCCTTCCAGAGACCCAGGATCGCAGCCAGGCACCTCATACAGgtaagtacagatactacagaatagccctctggaggacccaaacaaagaca #### Casp7_ID12088_3 --> 2 - 1 Original Alignment gtATGGACGTCCGGAATGGGACGGACAAAGATGCAGGGGCCCTCTTCAAGTGCTTCCAAAACCTGGGTTTTGAAGTAACCGTCCACAATGACTGCTCTTGTGCAAAGATGCAAGATCTGCTTAGAAAAg aaacccaatttgactagtttaccccactgtatttttttctttcattttaggtATGGGTGTCCGGAATGGGACAGGCAAAGATGCAGGGGCTCTGTTCAAGTGCTTCCAAAACCTGAGTCTGGAAGTGACTATTCACAATGACTGCCCTTGTGCAAAGATGCAGGCCTTACTTAGAAATtgtgaggtgaaatttcaagagttgtctgtgaaagtgtatttagtctataca Alignment from CESAR gtATGGACGTCCGGAATGGGACGGACAAAGATGCAGGGGCCCTCTTCAAGTGCTTCCAAAACCTGGGTTTTGAAGTAACCGTCCACAATGACTGCTCTTGTGCAAAGATGCAAGATCTGCTTAGAAAAg aaacccaatttgactagtttaccccactgtatttttttctttcattttaggtATGGGTGTCCGGAATGGGACAGGCAAAGATGCAGGGGCTCTGTTCAAGTGCTTCCAAAACCTGAGTCTGGAAGTGACTATTCACAATGACTGCCCTTGTGCAAAGATGCAGGCCTTACTTAGAAATtgtgaggtgaaatttcaagagttgtctgtgaaagtgtatttagtctataca Alignment from Spaln_aa2Genome GTATGGACGTCCGGAATGGGACGGACAAAGATGCAGGGGCCCTCTTCAAGTGCTTCCAAAACCTGGGTTTTGAAGTAACCGTCCACAATGACTGCTCTTGTGCAAAGATGCAAGATCTGCTTAGAAAAG aaacccaatttgactagtttaccccactgtatttttttctttcattttagGTATGGGTGTCCGGAATGGGACAGGCAAAGATGCAGGGGCTCTGTTCAAGTGCTTCCAAAACCTGAGTCTGGAAGTGACTATTCACAATGACTGCCCTTGTGCAAAGATGCAGGCCTTACTTAGAAATTgtgaggtgaaatttcaagagttgtctgtgaaagtgtatttagtctataca Alignment from Spaln_nt2Genome GTATGGACGTCCGGAATGGGACGGACAAAGATGCAGGGGCCCTCTTCAAGTGCTTCCAAAACCTGGGTTTTGAAGTAACCGTCCACAATGACTGCTCTTGTGCAAAGATGCAAGATCTGCTTAGAAAAG aaacccaatttgactagtttaccccactgtatttttttctttcattttagGTATGGGTGTCCGGAATGGGACAGGCAAAGATGCAGGGGCTCTGTTCAAGTGCTTCCAAAACCTGAGTCTGGAAGTGACTATTCACAATGACTGCCCTTGTGCAAAGATGCAGGCCTTACTTAGAAATTgtgaggtgaaatttcaagagttgtctgtgaaagtgtatttagtctataca Alignment from Pairagon GTATGGACGTCCGGAATGGGACGGACAAAGATGCAGGGGCCCTCTTCAAGTGCTTCCAAAACCTGGGTTTTGAAGTAACCGTCCACAATGACTGCTCTTGTGCAAAGATGCAAGATCTGCTTAGAAAAG aaacccaatttgactagtttaccccactgtatttttttctttcattttagGTATGGGTGTCCGGAATGGGACAGGCAAAGATGCAGGGGCTCTGTTCAAGTGCTTCCAAAACCTGAGTCTGGAAGTGACTATTCACAATGACTGCCCTTGTGCAAAGATGCAGGCCTTACTTAGAAATTgtgaggtgaaatttcaagagttgtctgtgaaagtgtatttagtctataca Alignment from Exonerate_protein2genome GTATGGACGTCCGGAATGGGACGGACAAAGATGCAGGGGCCCTCTTCAAGTGCTTCCAAAACCTGGGTTTTGAAGTAACCGTCCACAATGACTGCTCTTGTGCAAAGATGCAAGATCTGCTTAGAAAAG aaacccaatttgactagtttaccccactgtatttttttctttcattttagGTATGGGTGTCCGGAATGGGACAGGCAAAGATGCAGGGGCTCTGTTCAAGTGCTTCCAAAACCTGAGTCTGGAAGTGACTATTCACAATGACTGCCCTTGTGCAAAGATGCAGGCCTTACTTAGAAATTgtgaggtgaaatttcaagagttgtctgtgaaagtgtatttagtctataca Alignment from Exonerate_coding2genome GTATGGACGTCCGGAATGGGACGGACAAAGATGCAGGGGCCCTCTTCAAGTGCTTCCAAAACCTGGGTTTTGAAGTAACCGTCCACAATGACTGCTCTTGTGCAAAGATGCAAGATCTGCTTAGAAAAG aaacccaatttgactagtttaccccactgtatttttttctttcattttagGTATGGGTGTCCGGAATGGGACAGGCAAAGATGCAGGGGCTCTGTTCAAGTGCTTCCAAAACCTGAGTCTGGAAGTGACTATTCACAATGACTGCCCTTGTGCAAAGATGCAGGCCTTACTTAGAAATTgtgaggtgaaatttcaagagttgtctgtgaaagtgtatttagtctataca Alignment from GeneWise GTATGGACGTCCGGAATGGGACGGACAAAGATGCAGGGGCCCTCTTCAAGTGCTTCCAAAACCTGGGTTTTGAAGTAACCGTCCACAATGACTGCTCTTGTGCAAAGATGCAAGATCTGCTTAGAAAAG aaacccaatttgactagtttaccccactgtatttttttctttcattttagGTATGGGTGTCCGGAATGGGACAGGCAAAGATGCAGGGGCTCTGTTCAAGTGCTTCCAAAACCTGAGTCTGGAAGTGACTATTCACAATGACTGCCCTTGTGCAAAGATGCAGGCCTTACTTAGAAATTgtgaggtgaaatttcaagagttgtctgtgaaagtgtatttagtctataca #### Catsper1_ID927_4 --> 2 - 2 Original Alignment acTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTC------CGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCag ggctttttttgtactggcacaaatcttatctcgctctgtgttttcctaagacTTTTTTATTATGGTTATGGCA---CTGGGCTTTGTGTTACTGCAGTTCAATTCACTA---TACGCATTTTACAACCACAGCCTGTTCCTATTCCACATTCTCAAAGTTTTCATC---ATGAGGGCCCTGAGGGCGATACGGGTCCTTAGGAGGCTCaggtgagcagcattacccatttaggttcatggagagcactgcactgaacaac Alignment from CESAR acTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTC------CGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCag ggctttttttgtactggcacaaatcttatctcgctctgtgttttcctaagacTTTTTTATTATGGTTATGGCA---CTGGGCTTTGTGTTACTGCAGTTCAATTCACTA---TACGCATTTTACAACCACAGCCTGTTCCTATTCCACATTCTCAAAGTTTTC---ATCATGAGGGCCCTGAGGGCGATACGGGTCCTTAGGAGGCTCaggtgagcagcattacccatttaggttcatggagagcactgcactgaacaac Alignment from Spaln_aa2Genome ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG ggctttttttgtactggcacaaatcttatctcgctctgtgttttcctaagACTTTTTTATTATGGTTATGGCA---CTGGGCTTTGTGTTACTGCAGTTCAATTCACTATACGCATTTTACAACCACAGCCTGTTCCTATTCCACATTCTCAAAGTTTTCATCATGAGGGCCCTGAGGGCGATACGGGTCCTTAGGAGGCTCAGgtgagcagcattacccatttaggttcatggagagcactgcactgaacaac Alignment from Spaln_nt2Genome ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGG------ATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG ggctttttttgtactggcacaaatcttatctcgctctgtgttttcctaagACTTTTTTATTATGGTTATGGCA---CTGGGCTTTGTGTTACTGCAGTTCAATTCACT---ATACGCATTTTACAACCACAGCCTGTTCCTATTCCACATTCTCAAAGTTTTC---ATCATGAGGGCCCTGAGGGCGATACGGGTCCTTAGGAGGCTCAGgtgagcagcattacccatttaggttcatggagagcactgcactgaacaac Alignment from Pairagon ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTG------TTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG ggctttttttgtactggcacaaatcttatctcgctctgtgttttcctaagACTTTTTTATTATGGTTATGGCA---CTGGGCTTTGTGTTACTGCAGTTCAATTCACT---ATACGCATTTTACAACCACAGCCTGTTCCTATTCCACATTCTCAAAGTTTTC---ATCATGAGGGCCCTGAGGGCGATACGGGTCCTTAGGAGGCTCAGgtgagcagcattacccatttaggttcatggagagcactgcactgaacaac Alignment from Exonerate_protein2genome ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGC------CTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG ggctttttttgtactggcacaaatcttatctcgctctgtgttttcctaagACTTTTTTATTATGGTTATGGCA---CTGGGCTTTGTGTTACTGCAGTTCAATTCACTA---TACGCATTTTACAACCACAGCCTGTTCCTATTCCACATTCTCAAAGTTTTC---ATCATGAGGGCCCTGAGGGCGATACGGGTCCTTAGGAGGCTCAGgtgagcagcattacccatttaggttcatggagagcactgcactgaacaac Alignment from Exonerate_coding2genome ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGC------CTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG ggctttttttgtactggcacaaatcttatctcgctctgtgttttcctaagACTTTTTTATTATGGTTATGGCA---CTGGGCTTTGTGTTACTGCAGTTCAATTCACTA---TACGCATTTTACAACCACAGCCTGTTCCTATTCCACATTCTCAAAGTTTTC---ATCATGAGGGCCCTGAGGGCGATACGGGTCCTTAGGAGGCTCAGgtgagcagcattacccatttaggttcatggagagcactgcactgaacaac Alignment from GeneWise ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTC------CGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG ggctttttttgtactggcacaaatcttatctcgctctgtgttttcctaagACTTTTTTATTATGGTTATGGCA---CTGGGCTTTGTGTTACTGCAGTTCAATTCACTA---TACGCATTTTACAACCACAGCCTGTTCCTATTCCACATTCTCAAAGTTTTC---ATCATGAGGGCCCTGAGGGCGATACGGGTCCTTAGGAGGCTCAGgtgagcagcattacccatttaggttcatggagagcactgcactgaacaac #### Catsper1_ID929_6 --> 2 - 1 Original Alignment tcCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAg gcGCCT ggaatttcatttggttatgttgataatgatttttatgttaattttaacagtcCTCTTCTCTGTGATTCTCCAAGCACTCTTCCAGGATTCAGATCCCAAGCGTTTCCAGAACATCTTTACTACACTCTTCACCCTTTTCATGATGCTCAGCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAggtaagataacctaaggctacaggttgcatttttcttttttgcagctGCCT Alignment from CESAR tcCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAg gcGCCT ggaatttcatttggttatgttgataatgatttttatgttaattttaacagtcCTCTTCTCTGTGATTCTCCAAGCACTCTTCCAGGATTCAGATCCCAAGCGTTTCCAGAACATCTTTACTACACTCTTCACCCTTTTCATGATGCTCAGCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAggtaagataacctaaggctacagtattttgttacttttaaactagctGCCT Alignment from Spaln_aa2Genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG GCGCCT ggaatttcatttggttatgttgataatgatttttatgttaattttaacagTCCTCTTCTCTGTGATTCTCCAAGCACTCTTCCAGGATTCAGATCCCAAGCGTTTCCAGAACATCTTTACTACACTCTTCACCCTTTTCATGATGCTCAGCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtaagataacctaaggctacaggttgcatttttcttttttgcagCTGCCT Alignment from Spaln_nt2Genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG GCGCCT ggaatttcatttggttatgttgataatgatttttatgttaattttaacagTCCTCTTCTCTGTGATTCTCCAAGCACTCTTCCAGGATTCAGATCCCAAGCGTTTCCAGAACATCTTTACTACACTCTTCACCCTTTTCATGATGCTCAGCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtaagataacctaaggctacaggttgcatttttcttttttgcagCTGCCT Alignment from Pairagon TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG GCGCCT ggaatttcatttggttatgttgataatgatttttatgttaattttaacagTCCTCTTCTCTGTGATTCTCCAAGCACTCTTCCAGGATTCAGATCCCAAGCGTTTCCAGAACATCTTTACTACACTCTTCACCCTTTTCATGATGCTCAGCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtaagataacctaaggctacaggttgcatttttcttttttgcagCTGCCT Alignment from Exonerate_protein2genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG GCGCCT ggaatttcatttggttatgttgataatgatttttatgttaattttaacagTCCTCTTCTCTGTGATTCTCCAAGCACTCTTCCAGGATTCAGATCCCAAGCGTTTCCAGAACATCTTTACTACACTCTTCACCCTTTTCATGATGCTCAGCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtaagataacctaaggctacaggttgcatttttcttttttgcagCTGCCT Alignment from Exonerate_coding2genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG GCGCCT ggaatttcatttggttatgttgataatgatttttatgttaattttaacagTCCTCTTCTCTGTGATTCTCCAAGCACTCTTCCAGGATTCAGATCCCAAGCGTTTCCAGAACATCTTTACTACACTCTTCACCCTTTTCATGATGCTCAGCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtaagataacctaaggctacaggttgcatttttcttttttgcagCTGCCT Alignment from GeneWise TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG GCGCCT ggaatttcatttggttatgttgataatgatttttatgttaattttaacagTCCTCTTCTCTGTGATTCTCCAAGCACTCTTCCAGGATTCAGATCCCAAGCGTTTCCAGAACATCTTTACTACACTCTTCACCCTTTTCATGATGCTCAGCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtaagataacctaaggctacaggttgcatttttcttttttgcagCTGCCT #### Catsper1_ID932_9 --> 0 - 1 Original Alignment CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAg ctgcatatagggattgaatcccagagtcaagggaggtgtctcctttctagCAAGCTCCCCGAGTCCATGAAAAGTTGTTGGGTGACTCGCTAACAGAACTCAATAAGGCAggtgagtattggacttcaatttaatctgccctccaattagtccttagagga Alignment from CESAR CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAg ctgcatatagggattgaatcccagagtcaagggaggtgtctcctttctagCAAGCTCCCCGAGTCCATGAAAAGTTGTTGGGTGACTCGCTAACAGAACTCAATAAGGCAggtgagtattggacttcaatttaatctgccctccaattagtccttagagga Alignment from Spaln_aa2Genome CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAG ctgcatatagggattgaatcccagagtcaagggaggtgtctcctttctagCAAGCTCCCCGAGTCCATGAAAAGTTGTTGGGTGACTCGCTAACAGAACTCAATAAGGCAGgtgagtattggacttcaatttaatctgccctccaattagtccttagagga Alignment from Spaln_nt2Genome CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAG ctgcatatagggattgaatcccagagtcaagggaggtgtctcctttctagCAAGCTCCCCGAGTCCATGAAAAGTTGTTGGGTGACTCGCTAACAGAACTCAATAAGGCAGgtgagtattggacttcaatttaatctgccctccaattagtccttagagga Alignment from Pairagon CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAG ctgcatatagggattgaatcccagagtcaagggaggtgtctcctttctagCAAGCTCCCCGAGTCCATGAAAAGTTGTTGGGTGACTCGCTAACAGAACTCAATAAGGCAGgtgagtattggacttcaatttaatctgccctccaattagtccttagagga Alignment from Exonerate_protein2genome CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAG ctgcatatagggattgaatcccagagtcaagggaggtgtctcctttctagCAAGCTCCCCGAGTCCATGAAAAGTTGTTGGGTGACTCGCTAACAGAACTCAATAAGGCAGgtgagtattggacttcaatttaatctgccctccaattagtccttagagga Alignment from Exonerate_coding2genome CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAG ctgcatatagggattgaatcccagagtcaagggaggtgtctcctttctagCAAGCTCCCCGAGTCCATGAAAAGTTGTTGGGTGACTCGCTAACAGAACTCAATAAGGCAGgtgagtattggacttcaatttaatctgccctccaattagtccttagagga Alignment from GeneWise CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAG ctgcatatagggattgaatcccagagtcaagggaggtgtctcctttctagCAAGCTCCCCGAGTCCATGAAAAGTTGTTGGGTGACTCGCTAACAGAACTCAATAAGGCAGgtgagtattggacttcaatttaatctgccctccaattagtccttagagga #### Cbwd1_ID5359_9 --> 1 - 2 Original Alignment aTCAATAAATGGACTGGGAAAAGTTTTAGAAACTCAGAGATCAag ttcagaggaaacacctctcttctacctctgtccatttctttggtctatagaTCAATCAATGGCCTGGGAAAAGTTCTGGAAACTCAGAGATCAaggtgagtcttttttgatagcgaataagtctccacagcagtccccatgctct Alignment from CESAR aTCAATAAATGGACTGGGAAAAGTTTTAGAAACTCAGAGATCAag ttcagaggaaacacctctcttctacctctgtccatttctttggtctatagaTCAATCAATGGCCTGGGAAAAGTTCTGGAAACTCAGAGATCAaggtgagtcttttttgatagcgaataagtctccacagcagtccccatgctct Alignment from Spaln_aa2Genome ATCAATAAATGGACTGGGAAAAGTTTTAGAAACTCAGAGATCAAG ttcagaggaaacacctctcttctacctctgtccatttctttggtctatagATCAATCAATGGCCTGGGAAAAGTTCTGGAAACTCAGAGATCAAGgtgagtcttttttgatagcgaataagtctccacagcagtccccatgctct Alignment from Spaln_nt2Genome ATCAATAAATGGACTGGGAAAAGTTTTAGAAACTCAGAGATCAAG ttcagaggaaacacctctcttctacctctgtccatttctttggtctatagATCAATCAATGGCCTGGGAAAAGTTCTGGAAACTCAGAGATCAAGgtgagtcttttttgatagcgaataagtctccacagcagtccccatgctct Alignment from Pairagon ATCAATAAATGGACTGGGAAAAGTTTTAGAAACTCAGAGATCAAG ttcagaggaaacacctctcttctacctctgtccatttctttggtctatagATCAATCAATGGCCTGGGAAAAGTTCTGGAAACTCAGAGATCAAGgtgagtcttttttgatagcgaataagtctccacagcagtccccatgctct Alignment from Exonerate_protein2genome ATCAATAAATGGACTGGGAAAAGTTTTAGAAACTCAGAGATCAAG ttcagaggaaacacctctcttctacctctgtccatttctttggtctatagATCAATCAATGGCCTGGGAAAAGTTCTGGAAACTCAGAGATCAAGgtgagtcttttttgatagcgaataagtctccacagcagtccccatgctct Alignment from Exonerate_coding2genome ATCAATAAATGGACTGGGAAAAGTTTTAGAAACTCAGAGATCAAG ttcagaggaaacacctctcttctacctctgtccatttctttggtctatagATCAATCAATGGCCTGGGAAAAGTTCTGGAAACTCAGAGATCAAGgtgagtcttttttgatagcgaataagtctccacagcagtccccatgctct Alignment from GeneWise ATCAATAAATGGACTGGGAAAAGTTTTAGAAACTCAGAGATCAAG ttcagaggaaacacctctcttctacctctgtccatttctttggtctatagATCAATCAATGGCCTGGGAAAAGTTCTGGAAACTCAGAGATCAAGgtgagtcttttttgatagcgaataagtctccacagcagtccccatgctct #### Ccdc147_ID10401_3 --> 0 - 2 Original Alignment GAAATCGAGAAAGCCTGGAAGATGGTGGACTCGGCATATGACAAGGAGCAAAAGGCCAAGGAGACAATTCTTGCCCTGAAGGAGGAAATAGTGAACCTGACCAAACTAGTTGAGCAGGGGTCTGGACTGTCAATGGATCAGGACAGCaa gcctaagggcttagggcgtgcttctataagtttcctattatttctttaagGAGGTTGAGAAAGCTTGGAAGATGGTGGACTCAGCATATAAAAAGGATCAAGAGGCTAAGGAGACAATATTTTCCTTCAAGGAGGAGGTTGTGAATCTT---GACCTTGTTGAGCATGGGTCTGGGCTATCAATGGATCAAGAGAGCaagtaagtgagcaagtgggtgaaagtagaaagagagtaaccttgatctgagc Alignment from CESAR GAAATCGAGAAAGCCTGGAAGATGGTGGACTCGGCATATGACAAGGAGCAAAAGGCCAAGGAGACAATTCTTGCCCTGAAGGAGGAAATAGTGAACCTGACCAAACTAGTTGAGCAGGGGTCTGGACTGTCAATGGATCAGGACAGCaa gcctaagggcttagggcgtgcttctataagtttcctattatttctttaagGAGGTTGAGAAAGCTTGGAAGATGGTGGACTCAGCATATAAAAAGGATCAAGAGGCTAAGGAGACAATATTTTCCTTCAAGGAGGAGGTTGTGAATCTTGAC---CTTGTTGAGCATGGGTCTGGGCTATCAATGGATCAAGAGAGCaagtaagtgagcaagtgggtgaaagtagaaagagagtaaccttgatctgagc Alignment from Spaln_aa2Genome GAAATCGAGAAAGCCTGGAAGATGGTGGACTCGGCATATGACAAGGAGCAAAAGGCCAAGGAGACAATTCTTGCCCTGAAGGAGGAAATAGTGAACCTGACCAAACTAGTTGAGCAGGGGTCTGGACTGTCAATGGATCAGGACAGCAA gcctaagggcttagggcgtgcttctataagtttcctattatttctttaagGAGGTTGAGAAAGCTTGGAAGATGGTGGACTCAGCATATAAAAAGGATCAAGAGGCTAAGGAGACAATATTTTCCTTCAAGGAGGAGGTTGTGAATCTT---GACCTTGTTGAGCATGGGTCTGGGCTATCAATGGATCAAGAGAGCAAgtaagtgagcaagtgggtgaaagtagaaagagagtaaccttgatctgagc Alignment from Spaln_nt2Genome GAAATCGAGAAAGCCTGGAAGATGGTGGACTCGGCATATGACAAGGAGCAAAAGGCCAAGGAGACAATTCTTGCCCTGAAGGAGGAAATAGTGAACCTGACCAAACTAGTTGAGCAGGGGTCTGGACTGTCAATGGATCAGGACAGCAA gcctaagggcttagggcgtgcttctataagtttcctattatttctttaagGAGGTTGAGAAAGCTTGGAAGATGGTGGACTCAGCATATAAAAAGGATCAAGAGGCTAAGGAGACAATATTTTCCTTCAAGGAGGAGGTTGTGAATCT---TGACCTTGTTGAGCATGGGTCTGGGCTATCAATGGATCAAGAGAGCAAgtaagtgagcaagtgggtgaaagtagaaagagagtaaccttgatctgagc Alignment from Pairagon GAAATCGAGAAAGCCTGGAAGATGGTGGACTCGGCATATGACAAGGAGCAAAAGGCCAAGGAGACAATTCTTGCCCTGAAGGAGGAAATAGTGAA-CCTGACCAAACTAGTTGAGCAGGGGTCTGGACTGTCAATGGATCAGGACAGCAA gcctaagggcttagggcgtgcttctataagtttcctattatttctttaagGAGGTTGAGAAAGCTTGGAAGATGGTGGACTCAGCATATAAAAAGGATCAAGAGGCTAAGGAGACAATATTTTCCTTCAAGGAGGAGGTTGTGAATCTTGAC----CTTGTTGAGCATGGGTCTGGGCTATCAATGGATCAAGAGAGCAAgtaagtgagcaagtgggtgaaagtagaaagagagtaaccttgatctgagc Alignment from Exonerate_protein2genome GAAATCGAGAAAGCCTGGAAGATGGTGGACTCGGCATATGACAAGGAGCAAAAGGCCAAGGAGACAATTCTTGCCCTGAAGGAGGAAATAGTGAACCTGACCAAACTAGTTGAGCAGGGGTCTGGACTGTCAATGGATCAGGACAGCAA gcctaagggcttagggcgtgcttctataagtttcctattatttctttaagGAGGTTGAGAAAGCTTGGAAGATGGTGGACTCAGCATATAAAAAGGATCAAGAGGCTAAGGAGACAATATTTTCCTTCAAGGAGGAGGTTGTGAATCTT---GACCTTGTTGAGCATGGGTCTGGGCTATCAATGGATCAAGAGAGCAAgtaagtgagcaagtgggtgaaagtagaaagagagtaaccttgatctgagc Alignment from Exonerate_coding2genome GAAATCGAGAAAGCCTGGAAGATGGTGGACTCGGCATATGACAAGGAGCAAAAGGCCAAGGAGACAATTCTTGCCCTGAAGGAGGAAATAGTGAACCTGACCAAACTAGTTGAGCAGGGGTCTGGACTGTCAATGGATCAGGACAGCAA gcctaagggcttagggcgtgcttctataagtttcctattatttctttaagGAGGTTGAGAAAGCTTGGAAGATGGTGGACTCAGCATATAAAAAGGATCAAGAGGCTAAGGAGACAATATTTTCCTTCAAGGAGGAGGTTGTGAATCTT---GACCTTGTTGAGCATGGGTCTGGGCTATCAATGGATCAAGAGAGCAAgtaagtgagcaagtgggtgaaagtagaaagagagtaaccttgatctgagc Alignment from GeneWise GAAATCGAGAAAGCCTGGAAGATGGTGGACTCGGCATATGACAAGGAGCAAAAGGCCAAGGAGACAATTCTTGCCCTGAAGGAGGAAATAGTGAACCTGACCAAACTAGTTGAGCAGGGGTCTGGACTGTCAATGGATCAGGACAGCAA gcctaagggcttagggcgtgcttctataagtttcctattatttctttaagGAGGTTGAGAAAGCTTGGAAGATGGTGGACTCAGCATATAAAAAGGATCAAGAGGCTAAGGAGACAATATTTTCCTTCAAGGAGGAGGTTGTGAATCTTGAC---CTTGTTGAGCATGGGTCTGGGCTATCAATGGATCAAGAGAGCAAgtaagtgagcaagtgggtgaaagtagaaagagagtaaccttgatctgagc #### Ccdc147_ID10422_12 --> 0 - 0 Original Alignment GCCGAGCTACAGAAGCTGAGACAACAAGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGCGCATCATTGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAG cctgtttgaccctcatcagtggaatttgtggcatggtccctccgctgcagGCAGAGCTACAGAAGCTGCGACAACATGCCCTGGAGACTAAACACTTCATTGAAAAACAGGAGGTAGAAGAGAGGAAACTCTTGTGCATCATTGCTGAGGCTGATGGTGAGAGAGTGAGGCAGAAGAAGGAGTTGGACCAGgtgagtgaccaggctgtatatcagtgaaacacccaccatataagcccttt Alignment from CESAR GCCGAGCTACAGAAGCTGAGACAACAAGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGCGCATCATTGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAG cctgtttgaccctcatcagtggaatttgtggcatggtccctccgctgcagGCAGAGCTACAGAAGCTGCGACAACATGCCCTGGAGACTAAACACTTCATTGAAAAACAGGAGGTAGAAGAGAGGAAACTCTTGTGCATCATTGCTGAGGCTGATGGTGAGAGAGTGAGGCAGAAGAAGGAGTTGGACCAGgtgagtgaccaggctgtatatcagtgaaacacccaccatataagcccttt Alignment from Spaln_aa2Genome GCCGAGCTACAGAAGCTGAGACAACAAGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGCGCATCATTGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAG cctgtttgaccctcatcagtggaatttgtggcatggtccctccgctgcagGCAGAGCTACAGAAGCTGCGACAACATGCCCTGGAGACTAAACACTTCATTGAAAAACAGGAGGTAGAAGAGAGGAAACTCTTGTGCATCATTGCTGAGGCTGATGGTGAGAGAGTGAGGCAGAAGAAGGAGTTGGACCAGgtgagtgaccaggctgtatatcagtgaaacacccaccatataagcccttt Alignment from Spaln_nt2Genome GCCGAGCTACAGAAGCTGAGACAACAAGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGCGCATCATTGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAG cctgtttgaccctcatcagtggaatttgtggcatggtccctccgctgcagGCAGAGCTACAGAAGCTGCGACAACATGCCCTGGAGACTAAACACTTCATTGAAAAACAGGAGGTAGAAGAGAGGAAACTCTTGTGCATCATTGCTGAGGCTGATGGTGAGAGAGTGAGGCAGAAGAAGGAGTTGGACCAGgtgagtgaccaggctgtatatcagtgaaacacccaccatataagcccttt Alignment from Pairagon GCCGAGCTACAGAAGCTGAGACAACAAGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGCGCATCATTGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAG cctgtttgaccctcatcagtggaatttgtggcatggtccctccgctgcagGCAGAGCTACAGAAGCTGCGACAACATGCCCTGGAGACTAAACACTTCATTGAAAAACAGGAGGTAGAAGAGAGGAAACTCTTGTGCATCATTGCTGAGGCTGATGGTGAGAGAGTGAGGCAGAAGAAGGAGTTGGACCAGgtgagtgaccaggctgtatatcagtgaaacacccaccatataagcccttt Alignment from Exonerate_protein2genome GCCGAGCTACAGAAGCTGAGACAACAAGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGCGCATCATTGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAG cctgtttgaccctcatcagtggaatttgtggcatggtccctccgctgcagGCAGAGCTACAGAAGCTGCGACAACATGCCCTGGAGACTAAACACTTCATTGAAAAACAGGAGGTAGAAGAGAGGAAACTCTTGTGCATCATTGCTGAGGCTGATGGTGAGAGAGTGAGGCAGAAGAAGGAGTTGGACCAGgtgagtgaccaggctgtatatcagtgaaacacccaccatataagcccttt Alignment from Exonerate_coding2genome GCCGAGCTACAGAAGCTGAGACAACAAGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGCGCATCATTGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAG cctgtttgaccctcatcagtggaatttgtggcatggtccctccgctgcagGCAGAGCTACAGAAGCTGCGACAACATGCCCTGGAGACTAAACACTTCATTGAAAAACAGGAGGTAGAAGAGAGGAAACTCTTGTGCATCATTGCTGAGGCTGATGGTGAGAGAGTGAGGCAGAAGAAGGAGTTGGACCAGgtgagtgaccaggctgtatatcagtgaaacacccaccatataagcccttt Alignment from GeneWise GCCGAGCTACAGAAGCTGAGACAACAAGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGCGCATCATTGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAG cctgtttgaccctcatcagtggaatttgtggcatggtccctccgctgcagGCAGAGCTACAGAAGCTGCGACAACATGCCCTGGAGACTAAACACTTCATTGAAAAACAGGAGGTAGAAGAGAGGAAACTCTTGTGCATCATTGCTGAGGCTGATGGTGAGAGAGTGAGGCAGAAGAAGGAGTTGGACCAGgtgagtgaccaggctgtatatcagtgaaacacccaccatataagcccttt #### Ccdc147_ID10423_13 --> 0 - 2 Original Alignment GTCATCAGTGAGAGAGACATCCTGGGGTCTCAACTTGTCCGGCGAAACGATGAGTTAGCCTTGCTCTATGAGAAGATTAAGATCCAACAGTCAGTGCTGAACAAAGGCGAGACCCAGTACAACCAGCGGGTGGAGGACATGCGCATCCTCAAACTGGAGATCAAGAAGCTCCGAAGGGAGAAGGGGATCCTTGCCAGGAGTGTGGCCAATGTGGAGGAGCTCag ttcaaacaccatttggacatctttagcctcacccttctgcttttccccagGTCATTAGTAAGAGAGATATCCTTGGGTCTCAACTTGTTGAGCAGAATGATGAGTTAGCTCTGCTCTATGAGAAATCTAAGATTCAACAGACAGTGCTGAACAAAGGTGAGACTCAGTATAACCAACGTGTAGAAGACATGCGCATCCTGAAACTGGAGATCAAGAAGCTCCGAAGGGATAAAGGGATTCTCATAAGGTGTGCTGCCAATGTGGAGGAGTTTaggtaagtctccttggctatcaggggagactaggggggggcaatattatagc Alignment from CESAR GTCATCAGTGAGAGAGACATCCTGGGGTCTCAACTTGTCCGGCGAAACGATGAGTTAGCCTTGCTCTATGAGAAGATTAAGATCCAACAGTCAGTGCTGAACAAAGGCGAGACCCAGTACAACCAGCGGGTGGAGGACATGCGCATCCTCAAACTGGAGATCAAGAAGCTCCGAAGGGAGAAGGGGATCCTTGCCAGGAGTGTGGCCAATGTGGAGGAGCTCag ttcaaacaccatttggacatctttagcctcacccttctgcttttccccagGTCATTAGTAAGAGAGATATCCTTGGGTCTCAACTTGTTGAGCAGAATGATGAGTTAGCTCTGCTCTATGAGAAATCTAAGATTCAACAGACAGTGCTGAACAAAGGTGAGACTCAGTATAACCAACGTGTAGAAGACATGCGCATCCTGAAACTGGAGATCAAGAAGCTCCGAAGGGATAAAGGGATTCTCATAAGGTGTGCTGCCAATGTGGAGGAGTTTaggtaagtctccttggctatcaggggagactaggggggggcaatattatagc Alignment from Spaln_aa2Genome GTCATCAGTGAGAGAGACATCCTGGGGTCTCAACTTGTCCGGCGAAACGATGAGTTAGCCTTGCTCTATGAGAAGATTAAGATCCAACAGTCAGTGCTGAACAAAGGCGAGACCCAGTACAACCAGCGGGTGGAGGACATGCGCATCCTCAAACTGGAGATCAAGAAGCTCCGAAGGGAGAAGGGGATCCTTGCCAGGAGTGTGGCCAATGTGGAGGAGCTCAG ttcaaacaccatttggacatctttagcctcacccttctgcttttccccagGTCATTAGTAAGAGAGATATCCTTGGGTCTCAACTTGTTGAGCAGAATGATGAGTTAGCTCTGCTCTATGAGAAATCTAAGATTCAACAGACAGTGCTGAACAAAGGTGAGACTCAGTATAACCAACGTGTAGAAGACATGCGCATCCTGAAACTGGAGATCAAGAAGCTCCGAAGGGATAAAGGGATTCTCATAAGGTGTGCTGCCAATGTGGAGGAGTTTAGgtaagtctccttggctatcaggggagactaggggggggcaatattatagc Alignment from Spaln_nt2Genome GTCATCAGTGAGAGAGACATCCTGGGGTCTCAACTTGTCCGGCGAAACGATGAGTTAGCCTTGCTCTATGAGAAGATTAAGATCCAACAGTCAGTGCTGAACAAAGGCGAGACCCAGTACAACCAGCGGGTGGAGGACATGCGCATCCTCAAACTGGAGATCAAGAAGCTCCGAAGGGAGAAGGGGATCCTTGCCAGGAGTGTGGCCAATGTGGAGGAGCTCAG ttcaaacaccatttggacatctttagcctcacccttctgcttttccccagGTCATTAGTAAGAGAGATATCCTTGGGTCTCAACTTGTTGAGCAGAATGATGAGTTAGCTCTGCTCTATGAGAAATCTAAGATTCAACAGACAGTGCTGAACAAAGGTGAGACTCAGTATAACCAACGTGTAGAAGACATGCGCATCCTGAAACTGGAGATCAAGAAGCTCCGAAGGGATAAAGGGATTCTCATAAGGTGTGCTGCCAATGTGGAGGAGTTTAGgtaagtctccttggctatcaggggagactaggggggggcaatattatagc Alignment from Pairagon GTCATCAGTGAGAGAGACATCCTGGGGTCTCAACTTGTCCGGCGAAACGATGAGTTAGCCTTGCTCTATGAGAAGATTAAGATCCAACAGTCAGTGCTGAACAAAGGCGAGACCCAGTACAACCAGCGGGTGGAGGACATGCGCATCCTCAAACTGGAGATCAAGAAGCTCCGAAGGGAGAAGGGGATCCTTGCCAGGAGTGTGGCCAATGTGGAGGAGCTCAG ttcaaacaccatttggacatctttagcctcacccttctgcttttccccagGTCATTAGTAAGAGAGATATCCTTGGGTCTCAACTTGTTGAGCAGAATGATGAGTTAGCTCTGCTCTATGAGAAATCTAAGATTCAACAGACAGTGCTGAACAAAGGTGAGACTCAGTATAACCAACGTGTAGAAGACATGCGCATCCTGAAACTGGAGATCAAGAAGCTCCGAAGGGATAAAGGGATTCTCATAAGGTGTGCTGCCAATGTGGAGGAGTTTAGgtaagtctccttggctatcaggggagactaggggggggcaatattatagc Alignment from Exonerate_protein2genome GTCATCAGTGAGAGAGACATCCTGGGGTCTCAACTTGTCCGGCGAAACGATGAGTTAGCCTTGCTCTATGAGAAGATTAAGATCCAACAGTCAGTGCTGAACAAAGGCGAGACCCAGTACAACCAGCGGGTGGAGGACATGCGCATCCTCAAACTGGAGATCAAGAAGCTCCGAAGGGAGAAGGGGATCCTTGCCAGGAGTGTGGCCAATGTGGAGGAGCTCAG ttcaaacaccatttggacatctttagcctcacccttctgcttttccccagGTCATTAGTAAGAGAGATATCCTTGGGTCTCAACTTGTTGAGCAGAATGATGAGTTAGCTCTGCTCTATGAGAAATCTAAGATTCAACAGACAGTGCTGAACAAAGGTGAGACTCAGTATAACCAACGTGTAGAAGACATGCGCATCCTGAAACTGGAGATCAAGAAGCTCCGAAGGGATAAAGGGATTCTCATAAGGTGTGCTGCCAATGTGGAGGAGTTTAGgtaagtctccttggctatcaggggagactaggggggggcaatattatagc Alignment from Exonerate_coding2genome GTCATCAGTGAGAGAGACATCCTGGGGTCTCAACTTGTCCGGCGAAACGATGAGTTAGCCTTGCTCTATGAGAAGATTAAGATCCAACAGTCAGTGCTGAACAAAGGCGAGACCCAGTACAACCAGCGGGTGGAGGACATGCGCATCCTCAAACTGGAGATCAAGAAGCTCCGAAGGGAGAAGGGGATCCTTGCCAGGAGTGTGGCCAATGTGGAGGAGCTCAG ttcaaacaccatttggacatctttagcctcacccttctgcttttccccagGTCATTAGTAAGAGAGATATCCTTGGGTCTCAACTTGTTGAGCAGAATGATGAGTTAGCTCTGCTCTATGAGAAATCTAAGATTCAACAGACAGTGCTGAACAAAGGTGAGACTCAGTATAACCAACGTGTAGAAGACATGCGCATCCTGAAACTGGAGATCAAGAAGCTCCGAAGGGATAAAGGGATTCTCATAAGGTGTGCTGCCAATGTGGAGGAGTTTAGgtaagtctccttggctatcaggggagactaggggggggcaatattatagc Alignment from GeneWise GTCATCAGTGAGAGAGACATCCTGGGGTCTCAACTTGTCCGGCGAAACGATGAGTTAGCCTTGCTCTATGAGAAGATTAAGATCCAACAGTCAGTGCTGAACAAAGGCGAGACCCAGTACAACCAGCGGGTGGAGGACATGCGCATCCTCAAACTGGAGATCAAGAAGCTCCGAAGGGAGAAGGGGATCCTTGCCAGGAGTGTGGCCAATGTGGAGGAGCTCAG ttcaaacaccatttggacatctttagcctcacccttctgcttttccccagGTCATTAGTAAGAGAGATATCCTTGGGTCTCAACTTGTTGAGCAGAATGATGAGTTAGCTCTGCTCTATGAGAAATCTAAGATTCAACAGACAGTGCTGAACAAAGGTGAGACTCAGTATAACCAACGTGTAGAAGACATGCGCATCCTGAAACTGGAGATCAAGAAGCTCCGAAGGGATAAAGGGATTCTCATAAGGTGTGCTGCCAATGTGGAGGAGTTTAGgtaagtctccttggctatcaggggagactaggggggggcaatattatagc #### Ccdc172_ID12722_3 --> 0 - 0 Original Alignment GTTCAGCAGTTGTCTGAGAAATCTTTCCTCTTAGAGCTTCTGAAAACCCATGAAAACGCATTAGAGAGACAGCTCAGTGAGATTATCAGCGAGCGGGACACACTGCTCCAAGCCTGC ctgcatggctcatggcacatatttatatcattgtctttctgtacctcgagGTGCAGCAGTTGTCTGAGAAATCTTTCCTCTCAGAGCTTCTTAAAACTCATGAGAACACTTTGGAGAGACACCTCAGTGAAATCATTAGTGAGCGGGATATGCTACTCCCAGGCTGTgtaaaaagctgattttgcacgttgattttgtatcctgagactttgctaaa Alignment from CESAR GTTCAGCAGTTGTCTGAGAAATCTTTCCTCTTAGAGCTTCTGAAAACCCATGAAAACGCATTAGAGAGACAGCTCAGTGAGATTATCAGCGAGCGGGACACACTGCTCCAAGCCTGC ctgcatggctcatggcacatatttatatcattgtctttctgtacctcgagGTGCAGCAGTTGTCTGAGAAATCTTTCCTCTCAGAGCTTCTTAAAACTCATGAGAACACTTTGGAGAGACACCTCAGTGAAATCATTAGTGAGCGGGATATGCTACTCCCAGGCTGTgtaaaaagctgattttgcacgttgattttgtatcctgagactttgctaaa Alignment from Spaln_aa2Genome GTTCAGCAGTTGTCTGAGAAATCTTTCCTCTTAGAGCTTCTGAAAACCCATGAAAACGCATTAGAGAGACAGCTCAGTGAGATTATCAGCGAGCGGGACACACTGCTCCAAGCCTGC ctgcatggctcatggcacatatttatatcattgtctttctgtacctcgagGTGCAGCAGTTGTCTGAGAAATCTTTCCTCTCAGAGCTTCTTAAAACTCATGAGAACACTTTGGAGAGACACCTCAGTGAAATCATTAGTGAGCGGGATATGCTACTCCCAGGCTGTgtaaaaagctgattttgcacgttgattttgtatcctgagactttgctaaa Alignment from Spaln_nt2Genome GTTCAGCAGTTGTCTGAGAAATCTTTCCTCTTAGAGCTTCTGAAAACCCATGAAAACGCATTAGAGAGACAGCTCAGTGAGATTATCAGCGAGCGGGACACACTGCTCCAAGCCTGC ctgcatggctcatggcacatatttatatcattgtctttctgtacctcgagGTGCAGCAGTTGTCTGAGAAATCTTTCCTCTCAGAGCTTCTTAAAACTCATGAGAACACTTTGGAGAGACACCTCAGTGAAATCATTAGTGAGCGGGATATGCTACTCCCAGGCTGTgtaaaaagctgattttgcacgttgattttgtatcctgagactttgctaaa Alignment from Pairagon GTTCAGCAGTTGTCTGAGAAATCTTTCCTCTTAGAGCTTCTGAAAACCCATGAAAACGCATTAGAGAGACAGCTCAGTGAGATTATCAGCGAGCGGGACACACTGCTCCAAGCCTGC ctgcatggctcatggcacatatttatatcattgtctttctgtacctcgagGTGCAGCAGTTGTCTGAGAAATCTTTCCTCTCAGAGCTTCTTAAAACTCATGAGAACACTTTGGAGAGACACCTCAGTGAAATCATTAGTGAGCGGGATATGCTACTCCCAGGCTGTgtaaaaagctgattttgcacgttgattttgtatcctgagactttgctaaa Alignment from Exonerate_protein2genome GTTCAGCAGTTGTCTGAGAAATCTTTCCTCTTAGAGCTTCTGAAAACCCATGAAAACGCATTAGAGAGACAGCTCAGTGAGATTATCAGCGAGCGGGACACACTGCTCCAAGCCTGC ctgcatggctcatggcacatatttatatcattgtctttctgtacctcgagGTGCAGCAGTTGTCTGAGAAATCTTTCCTCTCAGAGCTTCTTAAAACTCATGAGAACACTTTGGAGAGACACCTCAGTGAAATCATTAGTGAGCGGGATATGCTACTCCCAGGCTGTgtaaaaagctgattttgcacgttgattttgtatcctgagactttgctaaa Alignment from Exonerate_coding2genome GTTCAGCAGTTGTCTGAGAAATCTTTCCTCTTAGAGCTTCTGAAAACCCATGAAAACGCATTAGAGAGACAGCTCAGTGAGATTATCAGCGAGCGGGACACACTGCTCCAAGCCTGC ctgcatggctcatggcacatatttatatcattgtctttctgtacctcgagGTGCAGCAGTTGTCTGAGAAATCTTTCCTCTCAGAGCTTCTTAAAACTCATGAGAACACTTTGGAGAGACACCTCAGTGAAATCATTAGTGAGCGGGATATGCTACTCCCAGGCTGTgtaaaaagctgattttgcacgttgattttgtatcctgagactttgctaaa Alignment from GeneWise GTTCAGCAGTTGTCTGAGAAATCTTTCCTCTTAGAGCTTCTGAAAACCCATGAAAACGCATTAGAGAGACAGCTCAGTGAGATTATCAGCGAGCGGGACACACTGCTCCAAGCCTGC ctgcatggctcatggcacatatttatatcattgtctttctgtacctcgagGTGCAGCAGTTGTCTGAGAAATCTTTCCTCTCAGAGCTTCTTAAAACTCATGAGAACACTTTGGAGAGACACCTCAGTGAAATCATTAGTGAGCGGGATATGCTACTCCCAGGCTGTgtaaaaagctgattttgcacgttgattttgtatcctgagactttgctaaa #### Ccdc88b_ID1823_26 --> 2 - 1 Original Alignment gaTCTGGTGTGGAATGGGATGGCTCCATTAAGACCCTCTCGGAGCATGAAGCAGATGACACTCGAGAGg ttccacatgcagaagtgatttaatcaaaggacctgcctctctcctcccaggaTCTGGAGTGGAGTGGGATGGCTCAGTTAAGCCTCTCTCAGAGCAAGAAGCAGATGACACTCGAGAGggtaagtcttagttactagaacggtagtccttagttactagtacccctcct Alignment from CESAR gaTCTGGTGTGGAATGGGATGGCTCCATTAAGACCCTCTCGGAGCATGAAGCAGATGACACTCGAGAGg ttccacatgcagaagtgatttaatcaaaggacctgcctctctcctcccaggaTCTGGAGTGGAGTGGGATGGCTCAGTTAAGCCTCTCTCAGAGCAAGAAGCAGATGACACTCGAGAGggtaagtcttagttactagaacggtagtccttagttactagtacccctcct Alignment from Spaln_aa2Genome GATCTGGTGTGGAATGGGATGGCTCCATTAAGACCCTCTCGGAGCATGAAGCAGATGACACTCGAGAGG ttccacatgcagaagtgatttaatcaaaggacctgcctctctcctcccagGATCTGGAGTGGAGTGGGATGGCTCAGTTAAGCCTCTCTCAGAGCAAGAAGCAGATGACACTCGAGAGGgtaagtcttagttactagaacggtagtccttagttactagtacccctcct Alignment from Spaln_nt2Genome GATCTGGTGTGGAATGGGATGGCTCCATTAAGACCCTCTCGGAGCATGAAGCAGATGACACTCGAGAGG ttccacatgcagaagtgatttaatcaaaggacctgcctctctcctcccagGATCTGGAGTGGAGTGGGATGGCTCAGTTAAGCCTCTCTCAGAGCAAGAAGCAGATGACACTCGAGAGGgtaagtcttagttactagaacggtagtccttagttactagtacccctcct Alignment from Pairagon GATCTGGTGTGGAATGGGATGGCTCCATTAAGACCCTCTCGGAGCATGAAGCAGATGACACTCGAGAGG ttccacatgcagaagtgatttaatcaaaggacctgcctctctcctcccagGATCTGGAGTGGAGTGGGATGGCTCAGTTAAGCCTCTCTCAGAGCAAGAAGCAGATGACACTCGAGAGGgtaagtcttagttactagaacggtagtccttagttactagtacccctcct Alignment from Exonerate_protein2genome GATCTGGTGTGGAATGGGATGGCTCCATTAAGACCCTCTCGGAGCATGAAGCAGATGACACTCGAGAGG ttccacatgcagaagtgatttaatcaaaggacctgcctctctcctcccagGATCTGGAGTGGAGTGGGATGGCTCAGTTAAGCCTCTCTCAGAGCAAGAAGCAGATGACACTCGAGAGGgtaagtcttagttactagaacggtagtccttagttactagtacccctcct Alignment from Exonerate_coding2genome ttccacatgcagaagtgatttaatcaaaggacctgcctctctcctcccaggatctggagtggagtgggatggctcagttaagcctctctcagagcaagaagcagatgacactcgagagggtaagtcttagttactagaacggtagtccttagttactagtacccctcct Alignment from GeneWise GATCTGGTGTGGAATGGGATGGCTCCATTAAGACCCTCTCGGAGCATGAAGCAGATGACACTCGAGAGG ttccacatgcagaagtgatttaatcaaaggacctgcctctctcctcccagGATCTGGAGTGGAGTGGGATGGCTCAGTTAAGCCTCTCTCAGAGCAAGAAGCAGATGACACTCGAGAGGgtaagtcttagttactagaacggtagtccttagttactagtacccctcct #### Ccdc88b_ID1825_24 --> 1 - 1 Original Alignment gAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAg cctcagctgtctctttgtgtggagcttttttttttcttgctaactcttaggAGGGGCAGCTGGTTGGCAGAAAAGGTCAGAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTTGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACTGAGTTGCCAGAAGGCAGGGAGGTTGATGGGACAggtaatttaaaccatctaacagtcagaatacccctggctgagatttaatgg Alignment from CESAR gAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAg cctcagctgtctctttgtgtggagcttttttttttcttgctaactcttaggAGGGGCAGCTGGTTGGCAGAAAAGGTCAGAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTTGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACTGAGTTGCCAGAAGGCAGGGAGGTTGATGGGACAggtaatttaaaccatctaacagtcagaatacccctggctgagatttaatgg Alignment from Spaln_aa2Genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG cctcagctgtctctttgtgtggagcttttttttttcttgctaactcttagGAGGGGCAGCTGGTTGGCAGAAAAGGTCAGAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTTGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACTGAGTTGCCAGAAGGCAGGGAGGTTGATGGGACAGgtaatttaaaccatctaacagtcagaatacccctggctgagatttaatgg Alignment from Spaln_nt2Genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG cctcagctgtctctttgtgtggagcttttttttttcttgctaactcttagGAGGGGCAGCTGGTTGGCAGAAAAGGTCAGAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTTGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACTGAGTTGCCAGAAGGCAGGGAGGTTGATGGGACAGgtaatttaaaccatctaacagtcagaatacccctggctgagatttaatgg Alignment from Pairagon GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG cctcagctgtctctttgtgtggagcttttttttttcttgctaactcttagGAGGGGCAGCTGGTTGGCAGAAAAGGTCAGAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTTGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACTGAGTTGCCAGAAGGCAGGGAGGTTGATGGGACAGgtaatttaaaccatctaacagtcagaatacccctggctgagatttaatgg Alignment from Exonerate_protein2genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG cctcagctgtctctttgtgtggagcttttttttttcttgctaactcttagGAGGGGCAGCTGGTTGGCAGAAAAGGTCAGAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTTGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACTGAGTTGCCAGAAGGCAGGGAGGTTGATGGGACAGgtaatttaaaccatctaacagtcagaatacccctggctgagatttaatgg Alignment from Exonerate_coding2genome cctcagctgtctctttgtgtggagcttttttttttcttgctaactcttaggaggggcagctggttggcagaaaaggtcagaaggctcattcggccccggcgtgagggggccctccatggggggcctcgccttggggctgatggggctggcagtactgaaagtttgggaggccctctagagactgagttgccagaaggcagggaggttgatgggacaggtaatttaaaccatctaacagtcagaatacccctggctgagatttaatgg Alignment from GeneWise GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG cctcagctgtctctttgtgtggagcttttttttttcttgctaactcttagGAGGGGCAGCTGGTTGGCAGAAAAGGTCAGAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTTGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACTGAGTTGCCAGAAGGCAGGGAGGTTGATGGGACAGgtaatttaaaccatctaacagtcagaatacccctggctgagatttaatgg #### Ccdc88b_ID1830_19 --> 0 - 2 Original Alignment GCTGAAAAGTCAATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAAGCTGGGGGTGCTAGAAGAGGAGGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCGGGACCATGAGGCCTTGGTGCAGCTGCAGCGACGGCAGGAGACGGAGCTGGAGGGACTGTTGGTGCGGCACCGAGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCcg attttgtaatgtatctggtttcctgacattatagaaacacttgctttcagGCCGAAAAATCAATGATGGAGATGCAGGGTCAGAGGCTGCATAGGAAGCTAGGAGTACTAGAAGAGGAAGTTCGTGCAGCAAGATGGGCTGAAGAGGAGACACGAGGGCAGCAGCAGGCTTTACTTCGTGACCATAAAGCCTTAGTACAGTTGCAACGTCGCCAGGAGACAGAGCTAGAAGGACTGCTGGTACAGCACCGGGATCTCAAAGCTAATATGCGAGCATTAGAGCTGGCCCATCGTGAGCTTCGCGGCcggtaaagttccttaattggaaaaattttctacacagcttacttgccttact Alignment from CESAR GCTGAAAAGTCAATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAAGCTGGGGGTGCTAGAAGAGGAGGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCGGGACCATGAGGCCTTGGTGCAGCTGCAGCGACGGCAGGAGACGGAGCTGGAGGGACTGTTGGTGCGGCACCGAGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCcg attttgtaatgtatctggtttcctgacattatagaaacacttgctttcagGCCGAAAAATCAATGATGGAGATGCAGGGTCAGAGGCTGCATAGGAAGCTAGGAGTACTAGAAGAGGAAGTTCGTGCAGCAAGATGGGCTGAAGAGGAGACACGAGGGCAGCAGCAGGCTTTACTTCGTGACCATAAAGCCTTAGTACAGTTGCAACGTCGCCAGGAGACAGAGCTAGAAGGACTGCTGGTACAGCACCGGGATCTCAAAGCTAATATGCGAGCATTAGAGCTGGCCCATCGTGAGCTTCGCGGCcggtaaagttccttaattggaaaaattttctacacagcttacttgccttact Alignment from Spaln_aa2Genome GCTGAAAAGTCAATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAAGCTGGGGGTGCTAGAAGAGGAGGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCGGGACCATGAGGCCTTGGTGCAGCTGCAGCGACGGCAGGAGACGGAGCTGGAGGGACTGTTGGTGCGGCACCGAGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCCG attttgtaatgtatctggtttcctgacattatagaaacacttgctttcagGCCGAAAAATCAATGATGGAGATGCAGGGTCAGAGGCTGCATAGGAAGCTAGGAGTACTAGAAGAGGAAGTTCGTGCAGCAAGATGGGCTGAAGAGGAGACACGAGGGCAGCAGCAGGCTTTACTTCGTGACCATAAAGCCTTAGTACAGTTGCAACGTCGCCAGGAGACAGAGCTAGAAGGACTGCTGGTACAGCACCGGGATCTCAAAGCTAATATGCGAGCATTAGAGCTGGCCCATCGTGAGCTTCGCGGCCGgtaaagttccttaattggaaaaattttctacacagcttacttgccttact Alignment from Spaln_nt2Genome GCTGAAAAGTCAATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAAGCTGGGGGTGCTAGAAGAGGAGGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCGGGACCATGAGGCCTTGGTGCAGCTGCAGCGACGGCAGGAGACGGAGCTGGAGGGACTGTTGGTGCGGCACCGAGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCCG attttgtaatgtatctggtttcctgacattatagaaacacttgctttcagGCCGAAAAATCAATGATGGAGATGCAGGGTCAGAGGCTGCATAGGAAGCTAGGAGTACTAGAAGAGGAAGTTCGTGCAGCAAGATGGGCTGAAGAGGAGACACGAGGGCAGCAGCAGGCTTTACTTCGTGACCATAAAGCCTTAGTACAGTTGCAACGTCGCCAGGAGACAGAGCTAGAAGGACTGCTGGTACAGCACCGGGATCTCAAAGCTAATATGCGAGCATTAGAGCTGGCCCATCGTGAGCTTCGCGGCCGgtaaagttccttaattggaaaaattttctacacagcttacttgccttact Alignment from Pairagon GCTGAAAAGTCAATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAAGCTGGGGGTGCTAGAAGAGGAGGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCGGGACCATGAGGCCTTGGTGCAGCTGCAGCGACGGCAGGAGACGGAGCTGGAGGGACTGTTGGTGCGGCACCGAGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCCG attttgtaatgtatctggtttcctgacattatagaaacacttgctttcagGCCGAAAAATCAATGATGGAGATGCAGGGTCAGAGGCTGCATAGGAAGCTAGGAGTACTAGAAGAGGAAGTTCGTGCAGCAAGATGGGCTGAAGAGGAGACACGAGGGCAGCAGCAGGCTTTACTTCGTGACCATAAAGCCTTAGTACAGTTGCAACGTCGCCAGGAGACAGAGCTAGAAGGACTGCTGGTACAGCACCGGGATCTCAAAGCTAATATGCGAGCATTAGAGCTGGCCCATCGTGAGCTTCGCGGCCGgtaaagttccttaattggaaaaattttctacacagcttacttgccttact Alignment from Exonerate_protein2genome GCTGAAAAGTCAATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAAGCTGGGGGTGCTAGAAGAGGAGGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCGGGACCATGAGGCCTTGGTGCAGCTGCAGCGACGGCAGGAGACGGAGCTGGAGGGACTGTTGGTGCGGCACCGAGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCCG attttgtaatgtatctggtttcctgacattatagaaacacttgctttcagGCCGAAAAATCAATGATGGAGATGCAGGGTCAGAGGCTGCATAGGAAGCTAGGAGTACTAGAAGAGGAAGTTCGTGCAGCAAGATGGGCTGAAGAGGAGACACGAGGGCAGCAGCAGGCTTTACTTCGTGACCATAAAGCCTTAGTACAGTTGCAACGTCGCCAGGAGACAGAGCTAGAAGGACTGCTGGTACAGCACCGGGATCTCAAAGCTAATATGCGAGCATTAGAGCTGGCCCATCGTGAGCTTCGCGGCCGgtaaagttccttaattggaaaaattttctacacagcttacttgccttact Alignment from Exonerate_coding2genome GCTGAAAAGTCAATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAAGCTGGGGGTGCTAGAAGAGGAGGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCGGGACCATGAGGCCTTGGTGCAGCTGCAGCGACGGCAGGAGACGGAGCTGGAGGGACTGTTGGTGCGGCACCGAGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCCG attttgtaatgtatctggtttcctgacattatagaaacacttgctttcagGCCGAAAAATCAATGATGGAGATGCAGGGTCAGAGGCTGCATAGGAAGCTAGGAGTACTAGAAGAGGAAGTTCGTGCAGCAAGATGGGCTGAAGAGGAGACACGAGGGCAGCAGCAGGCTTTACTTCGTGACCATAAAGCCTTAGTACAGTTGCAACGTCGCCAGGAGACAGAGCTAGAAGGACTGCTGGTACAGCACCGGGATCTCAAAGCTAATATGCGAGCATTAGAGCTGGCCCATCGTGAGCTTCGCGGCCGgtaaagttccttaattggaaaaattttctacacagcttacttgccttact Alignment from GeneWise GCTGAAAAGTCAATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAAGCTGGGGGTGCTAGAAGAGGAGGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCGGGACCATGAGGCCTTGGTGCAGCTGCAGCGACGGCAGGAGACGGAGCTGGAGGGACTGTTGGTGCGGCACCGAGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCCG attttgtaatgtatctggtttcctgacattatagaaacacttgctttcagGCCGAAAAATCAATGATGGAGATGCAGGGTCAGAGGCTGCATAGGAAGCTAGGAGTACTAGAAGAGGAAGTTCGTGCAGCAAGATGGGCTGAAGAGGAGACACGAGGGCAGCAGCAGGCTTTACTTCGTGACCATAAAGCCTTAGTACAGTTGCAACGTCGCCAGGAGACAGAGCTAGAAGGACTGCTGGTACAGCACCGGGATCTCAAAGCTAATATGCGAGCATTAGAGCTGGCCCATCGTGAGCTTCGCGGCCGgtaaagttccttaattggaaaaattttctacacagcttacttgccttact #### Ccdc88b_ID1832_17 --> 0 - 0 Original Alignment CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGA---GCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT agatcgatgtggagaacaactacctgtttacctccattttttttcctgagCTACATCAGTGCCCGGTG---CTT---GAAGGGGCACGGCGAGATGGTCCTTGGGCTGTGGAGACACAGAACGGGCGGCTCATTGTAGTAGAGCAAAATgtgagtaagaaggtgggggcttaccctagaggtaatagggctcacaacat Alignment from CESAR CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT agatcgatgtggagaacaactacctgtttacctccattttttttcctgagCTACATCAGTGCCCGGTG---CTTGAAGGGGCACGGCGAGATGGTCCTTGGGCTGTGGAGACACAGAACGGGCGGCTCATTGTAGTAGAGCAAAATgtgagtaagaaggtgggggcttaccctagaggtaatagggctcacaacat Alignment from Spaln_aa2Genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT agatcgatgtggagaacaactacctgtttacctccattttttttcctgagCTACATCAGTGCCCGGTG---CTTGAAGGGGCACGGCGAGATGGTCCTTGGGCTGTGGAGACACAGAACGGGCGGCTCATTGTAGTAGAGCAAAATgtgagtaagaaggtgggggcttaccctagaggtaatagggctcacaacat Alignment from Spaln_nt2Genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT agatcgatgtggagaacaactacctgtttacctccattttttttcctgagCTACATCAGTGCCCGGTG---CTTGAAGGGGCACGGCGAGATGGTCCTTGGGCTGTGGAGACACAGAACGGGCGGCTCATTGTAGTAGAGCAAAATgtgagtaagaaggtgggggcttaccctagaggtaatagggctcacaacat Alignment from Pairagon CTGCGCCAGTACCCGGTGGACCTGGCAACT----GGGGC---GCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT agatcgatgtggagaacaactacctgtttacctccattttttttcctgagCTACATCAGTGCCCGGTG----------CTTGAAGGGGCACGGCGAGATGGTCCTTGGGCTGTGGAGACACAGAACGGGCGGCTCATTGTAGTAGAGCAAAATgtgagtaagaaggtgggggcttaccctagaggtaatagggctcacaacat Alignment from Exonerate_protein2genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT agatcgatgtggagaacaactacctgtttacctccattttttttcctgagCTACATCAGTGCCCGGTG---CTTGAAGGGGCACGGCGAGATGGTCCTTGGGCTGTGGAGACACAGAACGGGCGGCTCATTGTAGTAGAGCAAAATgtgagtaagaaggtgggggcttaccctagaggtaatagggctcacaacat Alignment from Exonerate_coding2genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT agatcgatgtggagaacaactacctgtttacctccattttttttcctgagCTACATCAGTGCCCGGTG---CTTGAAGGGGCACGGCGAGATGGTCCTTGGGCTGTGGAGACACAGAACGGGCGGCTCATTGTAGTAGAGCAAAATgtgagtaagaaggtgggggcttaccctagaggtaatagggctcacaacat Alignment from GeneWise CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT-------------------------------------------------- agatcgatgtggagaacaactacctgtttacctccattttttttcctgagCTACATCAGTGCCCGGTG---CTTGAAGGGGCACGGCGAGATGGTCCTTGGGCTGTGGAGACACAGAACGGGCGGCTCATTGTAGTAGAGCAAAATGTGAGTAAGAAGGTGGGGGCTTACCCTAGAGGTAATAGGGCTCACAACAT #### Ccdc88b_ID1834_15 --> 0 - 2 Original Alignment GAGCTAGAGAAGGCTGTGCTACGGGGCCAGGAACTGGGGGACCGGCTGGAGCATCTGCAGGAGGAGCTAGAACAGGCAGCCTTAGAGCGCCAGAAGTTCCTTCAAGAACAG---GAGAACCAGCACCAGag cagtgtgcggagatgagtgctacctatttttctcactttggctgaggcagGAGCTAGAAAAGGCTGTGCTAGAGGGTCAGGAATTGGGGGACCAGCTGGAACATCTGCAGGAGGAGCTAAACCAGTCTGCCTTGGAGCACCAGAAGTTCCTGCAGGAACAACAAGAGAACCAACACCAGcggtgtgtatttggcagatagatgaagcagagagagcagtaaagtctagttg Alignment from CESAR GAGCTAGAGAAGGCTGTGCTACGGGGCCAGGAACTGGGGGACCGGCTGGAGCATCTGCAGGAGGAGCTAGAACAGGCAGCCTTAGAGCGCCAGAAGTTCCTTCAAGAA---CAGGAGAACCAGCACCAGag cagtgtgcggagatgagtgctacctatttttctcactttggctgaggcagGAGCTAGAAAAGGCTGTGCTAGAGGGTCAGGAATTGGGGGACCAGCTGGAACATCTGCAGGAGGAGCTAAACCAGTCTGCCTTGGAGCACCAGAAGTTCCTGCAGGAACAACAAGAGAACCAACACCAGcggtgtgtatttggcagatagatgaagcagagagagcagtaaagtctagttg Alignment from Spaln_aa2Genome GAGCTAGAGAAGGCTGTGCTACGGGGCCAGGAACTGGGGGACCGGCTGGAGCATCTGCAGGAGGAGCTAGAACAGGCAGCCTTAGAGCGCCAGAAGTTCCTTCAAGAA---CAGGAGAACCAGCACCAGAG cagtgtgcggagatgagtgctacctatttttctcactttggctgaggcagGAGCTAGAAAAGGCTGTGCTAGAGGGTCAGGAATTGGGGGACCAGCTGGAACATCTGCAGGAGGAGCTAAACCAGTCTGCCTTGGAGCACCAGAAGTTCCTGCAGGAACAACAAGAGAACCAACACCAGCGgtgtgtatttggcagatagatgaagcagagagagcagtaaagtctagttg Alignment from Spaln_nt2Genome GAGCTAGAGAAGGCTGTGCTACGGGGCCAGGAACTGGGGGACCGGCTGGAGCATCTGCAGGAGGAGCTAGAACAGGCAGCCTTAGAGCGCCAGAAGTTCCTTCAAGAACAG---GAGAACCAGCACCAGAG cagtgtgcggagatgagtgctacctatttttctcactttggctgaggcagGAGCTAGAAAAGGCTGTGCTAGAGGGTCAGGAATTGGGGGACCAGCTGGAACATCTGCAGGAGGAGCTAAACCAGTCTGCCTTGGAGCACCAGAAGTTCCTGCAGGAACAACAAGAGAACCAACACCAGCGgtgtgtatttggcagatagatgaagcagagagagcagtaaagtctagttg Alignment from Pairagon GAGCTAGAGAAGGCTGTGCTACGGGGCCAGGAACTGGGGGACCGGCTGGAGCATCTGCAGGAGGAGCTAGAACAGGCAGCCTTAGAGCGCCAGAAGTTCCTTCAAG---AACAGGAGAACCAGCACCAGAG cagtgtgcggagatgagtgctacctatttttctcactttggctgaggcagGAGCTAGAAAAGGCTGTGCTAGAGGGTCAGGAATTGGGGGACCAGCTGGAACATCTGCAGGAGGAGCTAAACCAGTCTGCCTTGGAGCACCAGAAGTTCCTGCAGGAACAACAAGAGAACCAACACCAGCGgtgtgtatttggcagatagatgaagcagagagagcagtaaagtctagttg Alignment from Exonerate_protein2genome GAGCTAGAGAAGGCTGTGCTACGGGGCCAGGAACTGGGGGACCGGCTGGAGCATCTGCAGGAGGAGCTAGAACAGGCAGCCTTAGAGCGCCAGAAGTTCCTTCAAGAA---CAGGAGAACCAGCACCAGAG cagtgtgcggagatgagtgctacctatttttctcactttggctgaggcagGAGCTAGAAAAGGCTGTGCTAGAGGGTCAGGAATTGGGGGACCAGCTGGAACATCTGCAGGAGGAGCTAAACCAGTCTGCCTTGGAGCACCAGAAGTTCCTGCAGGAACAACAAGAGAACCAACACCAGCGgtgtgtatttggcagatagatgaagcagagagagcagtaaagtctagttg Alignment from Exonerate_coding2genome GAGCTAGAGAAGGCTGTGCTACGGGGCCAGGAACTGGGGGACCGGCTGGAGCATCTGCAGGAGGAGCTAGAACAGGCAGCCTTAGAGCGCCAGAAGTTCCTTCAAGAA---CAGGAGAACCAGCACCAGAG cagtgtgcggagatgagtgctacctatttttctcactttggctgaggcagGAGCTAGAAAAGGCTGTGCTAGAGGGTCAGGAATTGGGGGACCAGCTGGAACATCTGCAGGAGGAGCTAAACCAGTCTGCCTTGGAGCACCAGAAGTTCCTGCAGGAACAACAAGAGAACCAACACCAGCGgtgtgtatttggcagatagatgaagcagagagagcagtaaagtctagttg Alignment from GeneWise GAGCTAGAGAAGGCTGTGCTACGGGGCCAGGAACTGGGGGACCGGCTGGAGCATCTGCAGGAGGAGCTAGAACAGGCAGCCTTAGAGCGCCAGAAGTTCCTTCAAGAACAG---GAGAACCAGCACCAGAG cagtgtgcggagatgagtgctacctatttttctcactttggctgaggcagGAGCTAGAAAAGGCTGTGCTAGAGGGTCAGGAATTGGGGGACCAGCTGGAACATCTGCAGGAGGAGCTAAACCAGTCTGCCTTGGAGCACCAGAAGTTCCTGCAGGAACAACAAGAGAACCAACACCAGCGgtgtgtatttggcagatagatgaagcagagagagcagtaaagtctagttg #### Ccdc88b_ID1836_13 --> 2 - 0 Original Alignment ccTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtggggcaacatgatcagaaagaatcgcattctttttttgtgatagcaTCCCTTCCTGGGCCAGCACCCTCATTGCAAGATGAGGTGAGGAAGGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAA---CATATG------GCACAGCTTGGGAGCCAGgtaaggtcatctgttgcatcatctgcgggtattcttgttccttgtgggta Alignment from CESAR ccTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtggggcaacatgatcagaaagaatcgcattctttttttgtgatagcaTCCCTTCCTGGGCCAGCACCCTCATTGCAAGATGAGGTGAGGAAGGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAA---CATATG------GCACAGCTTGGGAGCCAGgtaaggtcatctgttgcatcatctgcgggtattcttgttccttgtgggta Alignment from Spaln_aa2Genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtggggcaacatgatcagaaagaatcgcattctttttttgtgatagCATCCCTTCCTGGGCCAGCACCCTCATTGCAAGATGAGGTGAGGAAGGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAA---CATATG------GCACAGCTTGGGAGCCAGgtaaggtcatctgttgcatcatctgcgggtattcttgttccttgtgggta Alignment from Spaln_nt2Genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtggggcaacatgatcagaaagaatcgcattctttttttgtgatagCATCCCTTCCTGGGCCAGCACCCTCATTGCAAGATGAGGTGAGGAAGGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCA---ACATAT------GGCACAGCTTGGGAGCCAGgtaaggtcatctgttgcatcatctgcgggtattcttgttccttgtgggta Alignment from Pairagon CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtggggcaacatgatcagaaagaatcgcattctttttttgtgatagCATCCCTTCCTGGGCCAGCACCCTCATTGCAAGATGAGGTGAGGAAGGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAA---------CATATGGCACAGCTTGGGAGCCAGgtaaggtcatctgttgcatcatctgcgggtattcttgttccttgtgggta Alignment from Exonerate_protein2genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtggggcaacatgatcagaaagaatcgcattctttttttgtgatagCATCCCTTCCTGGGCCAGCACCCTCATTGCAAGATGAGGTGAGGAAGGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAA---------CATATGGCACAGCTTGGGAGCCAGgtaaggtcatctgttgcatcatctgcgggtattcttgttccttgtgggta Alignment from Exonerate_coding2genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtggggcaacatgatcagaaagaatcgcattctttttttgtgatagCATCCCTTCCTGGGCCAGCACCCTCATTGCAAGATGAGGTGAGGAAGGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAA---------CATATGGCACAGCTTGGGAGCCAGgtaaggtcatctgttgcatcatctgcgggtattcttgttccttgtgggta Alignment from GeneWise CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtggggcaacatgatcagaaagaatcgcattctttttttgtgatagCATCCCTTCCTGGGCCAGCACCCTCATTGCAAGATGAGGTGAGGAAGGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAACATATG---------GCACAGCTTGGGAGCCAGgtaaggtcatctgttgcatcatctgcgggtattcttgttccttgtgggta #### Ccdc88b_ID1844_5 --> 2 - 0 Original Alignment aaGAGGCAGTGGAC------------------------------------------------------GAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG tataccctcatctttttctttttactcatctctcttcttgcccttctcagagGAGGCAGTGGATGAGCTAGAGAGCATCCTGTGGTTGTTATTGGGGGCTTCAATACAGGTGAAAAGGAAGCTCGAAAGCATTTTTAGGTTGCTGTTAGGGGCTTCGGTACGGgtgggctgggggaaaagactggagtaccaacacaaagtggggcccctatg Alignment from CESAR aaGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG tataccctcatctttttctttttactcatctctcttcttgcccttctcagagGAGGCAGTGGATGAGCTAGAGAGCATCCTGTGGTTGTTATTGGGGGCTTCAATACAGgtgaaaaggaagctcgaaagcatttttaggttgctgttaggggcttcggtacgggtgggctgggggaaaagactggagtaccaacacaaagtggggcccctatg Alignment from Spaln_aa2Genome AAGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG tataccctcatctttttctttttactcatctctcttcttgcccttctcagAGGAGGCAGTGGATGAGCTAGAGAGCATCCTGTGGTTGTTATTGGGGGCTTCAATACAGgtgaaaaggaagctcgaaagcatttttaggttgctgttaggggcttcggtacgggtgggctgggggaaaagactggagtaccaacacaaagtggggcccctatg Alignment from Spaln_nt2Genome AAGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG tataccctcatctttttctttttactcatctctcttcttgcccttctcagAGGAGGCAGTGGATGAGCTAGAGAGCATCCTGTGGTTGTTATTGGGGGCTTCAATACAGgtgaaaaggaagctcgaaagcatttttaggttgctgttaggggcttcggtacgggtgggctgggggaaaagactggagtaccaacacaaagtggggcccctatg Alignment from Pairagon AAGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG tataccctcatctttttctttttactcatctctcttcttgcccttctcagAGGAGGCAGTGGATGAGCTAGAGAGCATCCTGTGGTTGTTATTGGGGGCTTCAATACAGgtgaaaaggaagctcgaaagcatttttaggttgctgttaggggcttcggtacgggtgggctgggggaaaagactggagtaccaacacaaagtggggcccctatg Alignment from Exonerate_protein2genome AAGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG tataccctcatctttttctttttactcatctctcttcttgcccttctcagAGGAGGCAGTGGATGAGCTAGAGAGCATCCTGTGGTTGTTATTGGGGGCTTCAATACAGgtgaaaaggaagctcgaaagcatttttaggttgctgttaggggcttcggtacgggtgggctgggggaaaagactggagtaccaacacaaagtggggcccctatg Alignment from Exonerate_coding2genome tataccctcatctttttctttttactcatctctcttcttgcccttctcagaggaggcagtggatgagctagagagcatcctgtggttgttattgggggcttcaatacaggtgaaaaggaagctcgaaagcatttttaggttgctgttaggggcttcggtacgggtgggctgggggaaaagactggagtaccaacacaaagtggggcccctatg Alignment from GeneWise AAGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG tataccctcatctttttctttttactcatctctcttcttgcccttctcagAGGAGGCAGTGGATGAGCTAGAGAGCATCCTGTGGTTGTTATTGGGGGCTTCAATACAGgtgaaaaggaagctcgaaagcatttttaggttgctgttaggggcttcggtacgggtgggctgggggaaaagactggagtaccaacacaaagtggggcccctatg #### Ccnj_ID8040_2 --> 0 - 1 Original Alignment GAGCTGAAGCTGCCTTCTTACAAGGGCCAATCTCCTCAGCTGAACCTCAGGCGGTATTTTGCTGATTTGATTGCCATTGTGAGCAATCGCTTCACCCTCTGCCCCCCTGCCCGCCATCTCGCCGTCTACCTGCTGGACCTGTTCATGGACCGCTATGACATCTCCATTCAGCAG---CTACACTTAGTTGCGCTTTCCTGTCTGCTTCTAGCAa tactctaaaatatattcattatttaaccttttgctactttgctgccccagGAGCTGAAACTTCCCTCATACAGGGGCCAGTCTCCACAGCTGAATCTAACGTGCTATATTGCTGATCTGATTGCCATAGTGAGTAATCGCTTTACCCTCTGCCCCCCAGCCCGTCATCTTGCTGTCTACCTGTTGGATCTGTTCATGGACCGCTATGACATTTCCATTCGTCACCAACTGCACTTAATAGCACTCTCTTGTCTTCTTTTAGCAagtaagggtctgtttttgttttaaggaaattgacatgtccattttatctga Alignment from CESAR GAGCTGAAGCTGCCTTCTTACAAGGGCCAATCTCCTCAGCTGAACCTCAGGCGGTATTTTGCTGATTTGATTGCCATTGTGAGCAATCGCTTCACCCTCTGCCCCCCTGCCCGCCATCTCGCCGTCTACCTGCTGGACCTGTTCATGGACCGCTATGACATCTCCATT---CAGCAGCTACACTTAGTTGCGCTTTCCTGTCTGCTTCTAGCAa tactctaaaatatattcattatttaaccttttgctactttgctgccccagGAGCTGAAACTTCCCTCATACAGGGGCCAGTCTCCACAGCTGAATCTAACGTGCTATATTGCTGATCTGATTGCCATAGTGAGTAATCGCTTTACCCTCTGCCCCCCAGCCCGTCATCTTGCTGTCTACCTGTTGGATCTGTTCATGGACCGCTATGACATTTCCATTCGTCACCAACTGCACTTAATAGCACTCTCTTGTCTTCTTTTAGCAagtaagggtctgtttttgttttaaggaaattgacatgtccattttatctga Alignment from Spaln_aa2Genome GAGCTGAAGCTGCCTTCTTACAAGGGCCAATCTCCTCAGCTGAACCTCAGGCGGTATTTTGCTGATTTGATTGCCATTGTGAGCAATCGCTTCACCCTCTGCCCCCCTGCCCGCCATCTCGCCGTCTACCTGCTGGACCTGTTCATGGACCGCTATGACATCTCCATT---CAGCAGCTACACTTAGTTGCGCTTTCCTGTCTGCTTCTAGCAA tactctaaaatatattcattatttaaccttttgctactttgctgccccagGAGCTGAAACTTCCCTCATACAGGGGCCAGTCTCCACAGCTGAATCTAACGTGCTATATTGCTGATCTGATTGCCATAGTGAGTAATCGCTTTACCCTCTGCCCCCCAGCCCGTCATCTTGCTGTCTACCTGTTGGATCTGTTCATGGACCGCTATGACATTTCCATTCGTCACCAACTGCACTTAATAGCACTCTCTTGTCTTCTTTTAGCAAgtaagggtctgtttttgttttaaggaaattgacatgtccattttatctga Alignment from Spaln_nt2Genome GAGCTGAAGCTGCCTTCTTACAAGGGCCAATCTCCTCAGCTGAACCTCAGGCGGTATTTTGCTGATTTGATTGCCATTGTGAGCAATCGCTTCACCCTCTGCCCCCCTGCCCGCCATCTCGCCGTCTACCTGCTGGACCTGTTCATGGACCGCTATGACATCTCCATTC---AGCAGCTACACTTAGTTGCGCTTTCCTGTCTGCTTCTAGCAA tactctaaaatatattcattatttaaccttttgctactttgctgccccagGAGCTGAAACTTCCCTCATACAGGGGCCAGTCTCCACAGCTGAATCTAACGTGCTATATTGCTGATCTGATTGCCATAGTGAGTAATCGCTTTACCCTCTGCCCCCCAGCCCGTCATCTTGCTGTCTACCTGTTGGATCTGTTCATGGACCGCTATGACATTTCCATTCGTCACCAACTGCACTTAATAGCACTCTCTTGTCTTCTTTTAGCAAgtaagggtctgtttttgttttaaggaaattgacatgtccattttatctga Alignment from Pairagon GAGCTGAAGCTGCCTTCTTACAAGGGCCAATCTCCTCAGCTGAACCTCAGGCGGTATTTTGCTGATTTGATTGCCATTGTGAGCAATCGCTTCACCCTCTGCCCCCCTGCCCGCCATCTCGCCGTCTACCTGCTGGACCTGTTCATGGACCGCTATGACATCTCCAT---TCAGCAGCTACACTTAGTTGCGCTTTCCTGTCTGCTTCTAGCAA tactctaaaatatattcattatttaaccttttgctactttgctgccccagGAGCTGAAACTTCCCTCATACAGGGGCCAGTCTCCACAGCTGAATCTAACGTGCTATATTGCTGATCTGATTGCCATAGTGAGTAATCGCTTTACCCTCTGCCCCCCAGCCCGTCATCTTGCTGTCTACCTGTTGGATCTGTTCATGGACCGCTATGACATTTCCATTCGTCACCAACTGCACTTAATAGCACTCTCTTGTCTTCTTTTAGCAAgtaagggtctgtttttgttttaaggaaattgacatgtccattttatctga Alignment from Exonerate_protein2genome GAGCTGAAGCTGCCTTCTTACAAGGGCCAATCTCCTCAGCTGAACCTCAGGCGGTATTTTGCTGATTTGATTGCCATTGTGAGCAATCGCTTCACCCTCTGCCCCCCTGCCCGCCATCTCGCCGTCTACCTGCTGGACCTGTTCATGGACCGCTATGACATCTCCATTCAG---CAGCTACACTTAGTTGCGCTTTCCTGTCTGCTTCTAGCAA tactctaaaatatattcattatttaaccttttgctactttgctgccccagGAGCTGAAACTTCCCTCATACAGGGGCCAGTCTCCACAGCTGAATCTAACGTGCTATATTGCTGATCTGATTGCCATAGTGAGTAATCGCTTTACCCTCTGCCCCCCAGCCCGTCATCTTGCTGTCTACCTGTTGGATCTGTTCATGGACCGCTATGACATTTCCATTCGTCACCAACTGCACTTAATAGCACTCTCTTGTCTTCTTTTAGCAAgtaagggtctgtttttgttttaaggaaattgacatgtccattttatctga Alignment from Exonerate_coding2genome GAGCTGAAGCTGCCTTCTTACAAGGGCCAATCTCCTCAGCTGAACCTCAGGCGGTATTTTGCTGATTTGATTGCCATTGTGAGCAATCGCTTCACCCTCTGCCCCCCTGCCCGCCATCTCGCCGTCTACCTGCTGGACCTGTTCATGGACCGCTATGACATCTCCATTCAG---CAGCTACACTTAGTTGCGCTTTCCTGTCTGCTTCTAGCAA tactctaaaatatattcattatttaaccttttgctactttgctgccccagGAGCTGAAACTTCCCTCATACAGGGGCCAGTCTCCACAGCTGAATCTAACGTGCTATATTGCTGATCTGATTGCCATAGTGAGTAATCGCTTTACCCTCTGCCCCCCAGCCCGTCATCTTGCTGTCTACCTGTTGGATCTGTTCATGGACCGCTATGACATTTCCATTCGTCACCAACTGCACTTAATAGCACTCTCTTGTCTTCTTTTAGCAAgtaagggtctgtttttgttttaaggaaattgacatgtccattttatctga Alignment from GeneWise GAGCTGAAGCTGCCTTCTTACAAGGGCCAATCTCCTCAGCTGAACCTCAGGCGGTATTTTGCTGATTTGATTGCCATTGTGAGCAATCGCTTCACCCTCTGCCCCCCTGCCCGCCATCTCGCCGTCTACCTGCTGGACCTGTTCATGGACCGCTATGACATCTCCATTCAG---CAGCTACACTTAGTTGCGCTTTCCTGTCTGCTTCTAGCAA tactctaaaatatattcattatttaaccttttgctactttgctgccccagGAGCTGAAACTTCCCTCATACAGGGGCCAGTCTCCACAGCTGAATCTAACGTGCTATATTGCTGATCTGATTGCCATAGTGAGTAATCGCTTTACCCTCTGCCCCCCAGCCCGTCATCTTGCTGTCTACCTGTTGGATCTGTTCATGGACCGCTATGACATTTCCATTCGTCACCAACTGCACTTAATAGCACTCTCTTGTCTTCTTTTAGCAAgtaagggtctgtttttgttttaaggaaattgacatgtccattttatctga #### Ccnj_ID8042_3 --> 2 - 1 Original Alignment gcAAATTTGAAGAAAAAGAAGACAGCGTGCCTAAGCTCGAGCAGCTCAATAGCCTGGGCTGTATGACGAACATGAACCTCGTGCTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACGGCTGCCCACTTCATTGAGTACTACCTATCTGAAGCCGTGCACGAGACAGACCTTCACGACGGCTGGCCGATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAg aatgtgtgtagggcagtactggctatagttccataactttacttgcacaggcAAATTTGAGGAGAAAGAAGACAGTGTACCTAAGCTAGAGCAGCTCAATAGCCTGGGTTGTATGACAAACATGAACCTTGTGTTCACCAAGCAGACCCTGTTGCATATGGAGCTGCTCCTTTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACAGCTGCCCATTTCATTGAGTATTACCTAGCTGAAGCTGTGCACGAGACAGACCATCATGATGGCTGGCCAATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAggtaagttgtctcccctaaaattatggcacatgcctaattaagtgttcaat Alignment from CESAR gcAAATTTGAAGAAAAAGAAGACAGCGTGCCTAAGCTCGAGCAGCTCAATAGCCTGGGCTGTATGACGAACATGAACCTCGTGCTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACGGCTGCCCACTTCATTGAGTACTACCTATCTGAAGCCGTGCACGAGACAGACCTTCACGACGGCTGGCCGATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAg aatgtgtgtagggcagtactggctatagttccataactttacttgcacaggcAAATTTGAGGAGAAAGAAGACAGTGTACCTAAGCTAGAGCAGCTCAATAGCCTGGGTTGTATGACAAACATGAACCTTGTGTTCACCAAGCAGACCCTGTTGCATATGGAGCTGCTCCTTTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACAGCTGCCCATTTCATTGAGTATTACCTAGCTGAAGCTGTGCACGAGACAGACCATCATGATGGCTGGCCAATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAggtaagttgtctcccctaaaattatggcacatgcctaattaagtgttcaat Alignment from Spaln_aa2Genome GCAAATTTGAAGAAAAAGAAGACAGCGTGCCTAAGCTCGAGCAGCTCAATAGCCTGGGCTGTATGACGAACATGAACCTCGTGCTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACGGCTGCCCACTTCATTGAGTACTACCTATCTGAAGCCGTGCACGAGACAGACCTTCACGACGGCTGGCCGATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAG aatgtgtgtagggcagtactggctatagttccataactttacttgcacagGCAAATTTGAGGAGAAAGAAGACAGTGTACCTAAGCTAGAGCAGCTCAATAGCCTGGGTTGTATGACAAACATGAACCTTGTGTTCACCAAGCAGACCCTGTTGCATATGGAGCTGCTCCTTTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACAGCTGCCCATTTCATTGAGTATTACCTAGCTGAAGCTGTGCACGAGACAGACCATCATGATGGCTGGCCAATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAGgtaagttgtctcccctaaaattatggcacatgcctaattaagtgttcaat Alignment from Spaln_nt2Genome GCAAATTTGAAGAAAAAGAAGACAGCGTGCCTAAGCTCGAGCAGCTCAATAGCCTGGGCTGTATGACGAACATGAACCTCGTGCTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACGGCTGCCCACTTCATTGAGTACTACCTATCTGAAGCCGTGCACGAGACAGACCTTCACGACGGCTGGCCGATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAG aatgtgtgtagggcagtactggctatagttccataactttacttgcacagGCAAATTTGAGGAGAAAGAAGACAGTGTACCTAAGCTAGAGCAGCTCAATAGCCTGGGTTGTATGACAAACATGAACCTTGTGTTCACCAAGCAGACCCTGTTGCATATGGAGCTGCTCCTTTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACAGCTGCCCATTTCATTGAGTATTACCTAGCTGAAGCTGTGCACGAGACAGACCATCATGATGGCTGGCCAATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAGgtaagttgtctcccctaaaattatggcacatgcctaattaagtgttcaat Alignment from Pairagon GCAAATTTGAAGAAAAAGAAGACAGCGTGCCTAAGCTCGAGCAGCTCAATAGCCTGGGCTGTATGACGAACATGAACCTCGTGCTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACGGCTGCCCACTTCATTGAGTACTACCTATCTGAAGCCGTGCACGAGACAGACCTTCACGACGGCTGGCCGATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAG aatgtgtgtagggcagtactggctatagttccataactttacttgcacagGCAAATTTGAGGAGAAAGAAGACAGTGTACCTAAGCTAGAGCAGCTCAATAGCCTGGGTTGTATGACAAACATGAACCTTGTGTTCACCAAGCAGACCCTGTTGCATATGGAGCTGCTCCTTTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACAGCTGCCCATTTCATTGAGTATTACCTAGCTGAAGCTGTGCACGAGACAGACCATCATGATGGCTGGCCAATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAGgtaagttgtctcccctaaaattatggcacatgcctaattaagtgttcaat Alignment from Exonerate_protein2genome GCAAATTTGAAGAAAAAGAAGACAGCGTGCCTAAGCTCGAGCAGCTCAATAGCCTGGGCTGTATGACGAACATGAACCTCGTGCTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACGGCTGCCCACTTCATTGAGTACTACCTATCTGAAGCCGTGCACGAGACAGACCTTCACGACGGCTGGCCGATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAG aatgtgtgtagggcagtactggctatagttccataactttacttgcacagGCAAATTTGAGGAGAAAGAAGACAGTGTACCTAAGCTAGAGCAGCTCAATAGCCTGGGTTGTATGACAAACATGAACCTTGTGTTCACCAAGCAGACCCTGTTGCATATGGAGCTGCTCCTTTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACAGCTGCCCATTTCATTGAGTATTACCTAGCTGAAGCTGTGCACGAGACAGACCATCATGATGGCTGGCCAATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAGgtaagttgtctcccctaaaattatggcacatgcctaattaagtgttcaat Alignment from Exonerate_coding2genome GCAAATTTGAAGAAAAAGAAGACAGCGTGCCTAAGCTCGAGCAGCTCAATAGCCTGGGCTGTATGACGAACATGAACCTCGTGCTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACGGCTGCCCACTTCATTGAGTACTACCTATCTGAAGCCGTGCACGAGACAGACCTTCACGACGGCTGGCCGATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAG aatgtgtgtagggcagtactggctatagttccataactttacttgcacagGCAAATTTGAGGAGAAAGAAGACAGTGTACCTAAGCTAGAGCAGCTCAATAGCCTGGGTTGTATGACAAACATGAACCTTGTGTTCACCAAGCAGACCCTGTTGCATATGGAGCTGCTCCTTTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACAGCTGCCCATTTCATTGAGTATTACCTAGCTGAAGCTGTGCACGAGACAGACCATCATGATGGCTGGCCAATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAGgtaagttgtctcccctaaaattatggcacatgcctaattaagtgttcaat Alignment from GeneWise GCAAATTTGAAGAAAAAGAAGACAGCGTGCCTAAGCTCGAGCAGCTCAATAGCCTGGGCTGTATGACGAACATGAACCTCGTGCTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACGGCTGCCCACTTCATTGAGTACTACCTATCTGAAGCCGTGCACGAGACAGACCTTCACGACGGCTGGCCGATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAG aatgtgtgtagggcagtactggctatagttccataactttacttgcacagGCAAATTTGAGGAGAAAGAAGACAGTGTACCTAAGCTAGAGCAGCTCAATAGCCTGGGTTGTATGACAAACATGAACCTTGTGTTCACCAAGCAGACCCTGTTGCATATGGAGCTGCTCCTTTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACAGCTGCCCATTTCATTGAGTATTACCTAGCTGAAGCTGTGCACGAGACAGACCATCATGATGGCTGGCCAATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAGgtaagttgtctcccctaaaattatggcacatgcctaattaagtgttcaat #### Ccs_ID664_4 --> 2 - 2 Original Alignment agAATCTGGGAGCAGCAGTGGCCATTCTGGAGGGCTGTGGCTCCATACAGGGGGTGGTCCGCTTCCTACAGCTATCCTCTGAACTCTGCTTGATTGAGGGAACCATCGACGGCCTAGAGCCTGGGCTGCATGGACTCCATGTGCATCAGTATGGGGACCTTACGAGGGACTGCAATag atgtcatgaaattttaatgacactacatttctggcttttaattattacagaaAATCTTGGGGCAACTGTCGCCATTCTGGAAGGGTATGGCACAATACAGGGACTGGTCCGTTTCTTACAACTATCCTCTGAACTCTGCTTGATGGAGGGAACAATTGATGGCCTAGAT---GGACTGCATGGACTACAAGTGCACCACTATGGAGACCTTTCACGTGACTGCAATaggtgaagaatctataagaactcatatgggctcttggggcttcaccctccca Alignment from CESAR agAATCTGGGAGCAGCAGTGGCCATTCTGGAGGGCTGTGGCTCCATACAGGGGGTGGTCCGCTTCCTACAGCTATCCTCTGAACTCTGCTTGATTGAGGGAACCATCGACGGCCTAGAGCCTGGGCTGCATGGACTCCATGTGCATCAGTATGGGGACCTTACGAGGGACTGCAATag atgtcatgaaattttaatgacactacatttctggcttttaattattacagaaAATCTTGGGGCAACTGTCGCCATTCTGGAAGGGTATGGCACAATACAGGGACTGGTCCGTTTCTTACAACTATCCTCTGAACTCTGCTTGATGGAGGGAACAATTGATGGCCTAGAT---GGACTGCATGGACTACAAGTGCACCACTATGGAGACCTTTCACGTGACTGCAATaggtgaagaatctataagaactcatatgggctcttggggcttcaccctccca Alignment from Spaln_aa2Genome AGAATCTGGGAGCAGCAGTGGCCATTCTGGAGGGCTGTGGCTCCATACAGGGGGTGGTCCGCTTCCTACAGCTATCCTCTGAACTCTGCTTGATTGAGGGAACCATCGACGGCCTAGAGCCTGGGCTGCATGGACTCCATGTGCATCAGTATGGGGACCTTACGAGGGACTGCAATAG atgtcatgaaattttaatgacactacatttctggcttttaattattacagAAAATCTTGGGGCAACTGTCGCCATTCTGGAAGGGTATGGCACAATACAGGGACTGGTCCGTTTCTTACAACTATCCTCTGAACTCTGCTTGATGGAGGGAACAATTGATGGCCTAGAT---GGACTGCATGGACTACAAGTGCACCACTATGGAGACCTTTCACGTGACTGCAATAGgtgaagaatctataagaactcatatgggctcttggggcttcaccctccca Alignment from Spaln_nt2Genome AGAATCTGGGAGCAGCAGTGGCCATTCTGGAGGGCTGTGGCTCCATACAGGGGGTGGTCCGCTTCCTACAGCTATCCTCTGAACTCTGCTTGATTGAGGGAACCATCGACGGCCTAGAGCCTGGGCTGCATGGACTCCATGTGCATCAGTATGGGGACCTTACGAGGGACTGCAATAG atgtcatgaaattttaatgacactacatttctggcttttaattattacagAAAATCTTGGGGCAACTGTCGCCATTCTGGAAGGGTATGGCACAATACAGGGACTGGTCCGTTTCTTACAACTATCCTCTGAACTCTGCTTGATGGAGGGAACAATTGATGGCCTAGA---TGGACTGCATGGACTACAAGTGCACCACTATGGAGACCTTTCACGTGACTGCAATAGgtgaagaatctataagaactcatatgggctcttggggcttcaccctccca Alignment from Pairagon AGAATCTGGGAGCAGCAGTGGCCATTCTGGAGGGCTGTGGCTCCATACAGGGGGTGGTCCGCTTCCTACAGCTATCCTCTGAACTCTGCTTGATTGAGGGAACCATCGACGGCCTAGAGCCTGGGCTGCATGGACTCCATGTGCATCAGTATGGGGACCTTACGAGGGACTGCAATAG atgtcatgaaattttaatgacactacatttctggcttttaattattacagAAAATCTTGGGGCAACTGTCGCCATTCTGGAAGGGTATGGCACAATACAGGGACTGGTCCGTTTCTTACAACTATCCTCTGAACTCTGCTTGATGGAGGGAACAATTGATGGCCTAGA---TGGACTGCATGGACTACAAGTGCACCACTATGGAGACCTTTCACGTGACTGCAATAGgtgaagaatctataagaactcatatgggctcttggggcttcaccctccca Alignment from Exonerate_protein2genome AGAATCTGGGAGCAGCAGTGGCCATTCTGGAGGGCTGTGGCTCCATACAGGGGGTGGTCCGCTTCCTACAGCTATCCTCTGAACTCTGCTTGATTGAGGGAACCATCGACGGCCTAGAGCCTGGGCTGCATGGACTCCATGTGCATCAGTATGGGGACCTTACGAGGGACTGCAATAG atgtcatgaaattttaatgacactacatttctggcttttaattattacagAAAATCTTGGGGCAACTGTCGCCATTCTGGAAGGGTATGGCACAATACAGGGACTGGTCCGTTTCTTACAACTATCCTCTGAACTCTGCTTGATGGAGGGAACAATTGATGGCCTAGAT---GGACTGCATGGACTACAAGTGCACCACTATGGAGACCTTTCACGTGACTGCAATAGgtgaagaatctataagaactcatatgggctcttggggcttcaccctccca Alignment from Exonerate_coding2genome AGAATCTGGGAGCAGCAGTGGCCATTCTGGAGGGCTGTGGCTCCATACAGGGGGTGGTCCGCTTCCTACAGCTATCCTCTGAACTCTGCTTGATTGAGGGAACCATCGACGGCCTAGAGCCTGGGCTGCATGGACTCCATGTGCATCAGTATGGGGACCTTACGAGGGACTGCAAT atgtcatgaaattttaatgacactacatttctggcttttaattattacagAAAATCTTGGGGCAACTGTCGCCATTCTGGAAGGGTATGGCACAATACAGGGACTGGTCCGTTTCTTACAACTATCCTCTGAACTCTGCTTGATGGAGGGAACAATTGATGGCCTAGAT---GGACTGCATGGACTACAAGTGCACCACTATGGAGACCTTTCACGTGACTGCAATaggtgaagaatctataagaactcatatgggctcttggggcttcaccctccca Alignment from GeneWise AGAATCTGGGAGCAGCAGTGGCCATTCTGGAGGGCTGTGGCTCCATACAGGGGGTGGTCCGCTTCCTACAGCTATCCTCTGAACTCTGCTTGATTGAGGGAACCATCGACGGCCTAGAGCCTGGGCTGCATGGACTCCATGTGCATCAGTATGGGGACCTTACGAGGGACTGCAATAG atgtcatgaaattttaatgacactacatttctggcttttaattattacagAAAATCTTGGGGCAACTGTCGCCATTCTGGAAGGGTATGGCACAATACAGGGACTGGTCCGTTTCTTACAACTATCCTCTGAACTCTGCTTGATGGAGGGAACAATTGATGGCCTAGAT---GGACTGCATGGACTACAAGTGCACCACTATGGAGACCTTTCACGTGACTGCAATAGgtgaagaatctataagaactcatatgggctcttggggcttcaccctccca #### Cd5_ID2991_7 --> 2 - 1 Original Alignment gcCAAGACCCAAACCCAGCGGGCCTGGCCCCAGGCACTGTGGCAAGCATCATCCTGACCCTTGTACTCCTGGTGGTGCTGCTGGCCATGTGTGGTCCTCTGGTCTACAAGAAGCTGGTGAAGAAAt ttcctatccccattggagcgggatctcatcaccttgtcctcccctacgaggtCAGGACCCAAACCCAGCAGGCCTGTCCCCAGGTACAGTGGCGATCATCATCTTACCCCTTGTAATATTGGTGGTGCTATTAGGCATGTGTGGACCTCTGGTTTACAGTAAGCTGGTGAAAAAAtgtaagcttcagcttatcctactctccacagcttcacacaattttttccta Alignment from CESAR gcCAAGACCCAAACCCAGCGGGCCTGGCCCCAGGCACTGTGGCAAGCATCATCCTGACCCTTGTACTCCTGGTGGTGCTGCTGGCCATGTGTGGTCCTCTGGTCTACAAGAAGCTGGTGAAGAAAt ttcctatccccattggagcgggatctcatcaccttgtcctcccctacgaggtCAGGACCCAAACCCAGCAGGCCTGTCCCCAGGTACAGTGGCGATCATCATCTTACCCCTTGTAATATTGGTGGTGCTATTAGGCATGTGTGGACCTCTGGTTTACAGTAAGCTGGTGAAAAAAtgtaagcttcagcttatcctactctccacagcttcacacaattttttccta Alignment from Spaln_aa2Genome GCCAAGACCCAAACCCAGCGGGCCTGGCCCCAGGCACTGTGGCAAGCATCATCCTGACCCTTGTACTCCTGGTGGTGCTGCTGGCCATGTGTGGTCCTCTGGTCTACAAGAAGCTGGTGAAGAAAT ttcctatccccattggagcgggatctcatcaccttgtcctcccctacgagGTCAGGACCCAAACCCAGCAGGCCTGTCCCCAGGTACAGTGGCGATCATCATCTTACCCCTTGTAATATTGGTGGTGCTATTAGGCATGTGTGGACCTCTGGTTTACAGTAAGCTGGTGAAAAAATgtaagcttcagcttatcctactctccacagcttcacacaattttttccta Alignment from Spaln_nt2Genome GCCAAGACCCAAACCCAGCGGGCCTGGCCCCAGGCACTGTGGCAAGCATCATCCTGACCCTTGTACTCCTGGTGGTGCTGCTGGCCATGTGTGGTCCTCTGGTCTACAAGAAGCTGGTGAAGAAAT ttcctatccccattggagcgggatctcatcaccttgtcctcccctacgagGTCAGGACCCAAACCCAGCAGGCCTGTCCCCAGGTACAGTGGCGATCATCATCTTACCCCTTGTAATATTGGTGGTGCTATTAGGCATGTGTGGACCTCTGGTTTACAGTAAGCTGGTGAAAAAATgtaagcttcagcttatcctactctccacagcttcacacaattttttccta Alignment from Pairagon GCCAAGACCCAAACCCAGCGGGCCTGGCCCCAGGCACTGTGGCAAGCATCATCCTGACCCTTGTACTCCTGGTGGTGCTGCTGGCCATGTGTGGTCCTCTGGTCTACAAGAAGCTGGTGAAGAAAT ttcctatccccattggagcgggatctcatcaccttgtcctcccctacgagGTCAGGACCCAAACCCAGCAGGCCTGTCCCCAGGTACAGTGGCGATCATCATCTTACCCCTTGTAATATTGGTGGTGCTATTAGGCATGTGTGGACCTCTGGTTTACAGTAAGCTGGTGAAAAAATgtaagcttcagcttatcctactctccacagcttcacacaattttttccta Alignment from Exonerate_protein2genome GCCAAGACCCAAACCCAGCGGGCCTGGCCCCAGGCACTGTGGCAAGCATCATCCTGACCCTTGTACTCCTGGTGGTGCTGCTGGCCATGTGTGGTCCTCTGGTCTACAAGAAGCTGGTGAAGAAAT ttcctatccccattggagcgggatctcatcaccttgtcctcccctacgagGTCAGGACCCAAACCCAGCAGGCCTGTCCCCAGGTACAGTGGCGATCATCATCTTACCCCTTGTAATATTGGTGGTGCTATTAGGCATGTGTGGACCTCTGGTTTACAGTAAGCTGGTGAAAAAATgtaagcttcagcttatcctactctccacagcttcacacaattttttccta Alignment from Exonerate_coding2genome GCCAAGACCCAAACCCAGCGGGCCTGGCCCCAGGCACTGTGGCAAGCATCATCCTGACCCTTGTACTCCTGGTGGTGCTGCTGGCCATGTGTGGTCCTCTGGTCTACAAGAAGCTGGTGAAGAAAT ttcctatccccattggagcgggatctcatcaccttgtcctcccctacgagGTCAGGACCCAAACCCAGCAGGCCTGTCCCCAGGTACAGTGGCGATCATCATCTTACCCCTTGTAATATTGGTGGTGCTATTAGGCATGTGTGGACCTCTGGTTTACAGTAAGCTGGTGAAAAAATgtaagcttcagcttatcctactctccacagcttcacacaattttttccta Alignment from GeneWise GCCAAGACCCAAACCCAGCGGGCCTGGCCCCAGGCACTGTGGCAAGCATCATCCTGACCCTTGTACTCCTGGTGGTGCTGCTGGCCATGTGTGGTCCTCTGGTCTACAAGAAGCTGGTGAAGAAAT ttcctatccccattggagcgggatctcatcaccttgtcctcccctacgagGTCAGGACCCAAACCCAGCAGGCCTGTCCCCAGGTACAGTGGCGATCATCATCTTACCCCTTGTAATATTGGTGGTGCTATTAGGCATGTGTGGACCTCTGGTTTACAGTAAGCTGGTGAAAAAATgtaagcttcagcttatcctactctccacagcttcacacaattttttccta #### Cd5_ID2994_4 --> 2 - 1 Original Alignment GAGCCTGATCTGCCTAg agCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAg GAGCCTGAGCTGCCTAggtaacagacagttctgtctctctttcactgcagaaCCCCAGAGAACGGCTCCTCCGCCCACAACTACTCCACCCACCACTGTACCGGAACCCACAggtgagttgatgtacaccaggaagacaaagtagagaatgatgttgatataa Alignment from CESAR GAGCCTGATCTGCCTAg agCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAg GAGCCTGAGCTGCCTAggtaagcgacagttctgtctctctttcactgcagaaCCCCAGAGAACGGCTCCTCCGCCCACAACTACTCCACCCACCACTGTACCGGAACCCACAggtgagttgatgtacaccaggaagacaaagtagagaatgatgttgatataa Alignment from Spaln_aa2Genome GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG GAGCCTGAGCTGCCTAGgtaacagacagttctgtctctctttcactgcagAACCCCAGAGAACGGCTCCTCCGCCCACAACTACTCCACCCACCACTGTACCGGAACCCACAGgtgagttgatgtacaccaggaagacaaagtagagaatgatgttgatataa Alignment from Spaln_nt2Genome GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG GAGCCTGAGCTGCCTAGgtaacagacagttctgtctctctttcactgcagAACCCCAGAGAACGGCTCCTCCGCCCACAACTACTCCACCCACCACTGTACCGGAACCCACAGgtgagttgatgtacaccaggaagacaaagtagagaatgatgttgatataa Alignment from Pairagon GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG GAGCCTGAGCTGCCTAGgtaacagacagttctgtctctctttcactgcagAACCCCAGAGAACGGCTCCTCCGCCCACAACTACTCCACCCACCACTGTACCGGAACCCACAGgtgagttgatgtacaccaggaagacaaagtagagaatgatgttgatataa Alignment from Exonerate_protein2genome GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG GAGCCTGAGCTGCCTAGgtaacagacagttctgtctctctttcactgcagAACCCCAGAGAACGGCTCCTCCGCCCACAACTACTCCACCCACCACTGTACCGGAACCCACAGgtgagttgatgtacaccaggaagacaaagtagagaatgatgttgatataa Alignment from Exonerate_coding2genome GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG GAGCCTGAGCTGCCTAGgtaacagacagttctgtctctctttcactgcagAACCCCAGAGAACGGCTCCTCCGCCCACAACTACTCCACCCACCACTGTACCGGAACCCACAGgtgagttgatgtacaccaggaagacaaagtagagaatgatgttgatataa Alignment from GeneWise GAGCCTGATCTGCCTA---------------------------------GAGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG GAGCCTGAGCTGCCTAGGTAACAGACAGTTCTGTCTCTCTTTCACTGCAGAACCCCAGAGAACGGCTCCTCCGCCCACAACTACTCCACCCACCACTGTACCGGAACCCACAGgtgagttgatgtacaccaggaagacaaagtagagaatgatgttgatataa #### Cd6_ID3018_6 --> 2 - 1 Original Alignment gcTCCCAGAGACATCTCAATCTGTCTACTTCT---GAAGTGCCTTCCAGAGTTCCAGTCACGATAg aagagaagatggaaagctgacaaaaataaaggcgtttgctttgtctctaggcTCCCAT------ATCAACCTCTCTATGTCATCTGAAGTACCTTCCAGACTTCCAGTCATGATAggtatggccttccttatcagtacacatgtttatgcgagcccaaaaagcttg Alignment from CESAR gcTCCCAGAGACATCTCAATCTGTCT---ACTTCTGAAGTGCCTTCCAGAGTTCCAGTCACGATAg aagagaagatggaaagctgacaaaaataaaggcgtttgctttgtctctaggcTCC------CATATCAACCTCTCTATGTCATCTGAAGTACCTTCCAGACTTCCAGTCATGATAggtatggccttccttatcagtacacatgtttatgcgagcccaaaaagcttg Alignment from Spaln_aa2Genome GCTCCCAGAGACATCTCAATCTGTCTACTTCTGAAGTGCCTTCCAGAGTTCCAGTCACGATAG aagagaagatggaaagctgacaaaaataaaggcgtttgctttgtctctagGCTCCCATATCAACCTCTCTATGTCA---TCTGAAGTACCTTCCAGACTTCCAGTCATGATAGgtatggccttccttatcagtacacatgtttatgcgagcccaaaaagcttg Alignment from Spaln_nt2Genome GCTCCCAGAGACATCTCAATCTGTCTACTTCTGAAGTGCCTTCCAGAGTTCCAGTCACGATAG aagagaagatggaaagctgacaaaaataaaggcgtttgctttgtctctagGCTCCCATATCAACCTCTCTATGT---CATCTGAAGTACCTTCCAGACTTCCAGTCATGATAGgtatggccttccttatcagtacacatgtttatgcgagcccaaaaagcttg Alignment from Pairagon GCTCCCAGAGACATCTCAATCTGTCTA---CTTCTGAAGTGCCTTCCAGAGTTCCAGTCACGATAG aagagaagatggaaagctgacaaaaataaaggcgtttgctttgtctctagGCTCC------CATATCAACCTCTCTATGTCATCTGAAGTACCTTCCAGACTTCCAGTCATGATAGgtatggccttccttatcagtacacatgtttatgcgagcccaaaaagcttg Alignment from Exonerate_protein2genome GCTCCCAGAGACATCTCAATCTGTCTACTTCTGAAGTGCCTTCCAGAGTTCCAGTCACGATAG aagagaagatggaaagctgacaaaaataaaggcgtttgctttgtctctagGCTCCCATATCAACCTCTCTATGTCA---TCTGAAGTACCTTCCAGACTTCCAGTCATGATAGgtatggccttccttatcagtacacatgtttatgcgagcccaaaaagcttg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise aagagaagatggaaagctgacaaaaataaaggcgtttgctttgtctctaggctcccatatcaacctctctatgtcatctgaagtaccttccagacttccagtcatgataggtatggccttccttatcagtacacatgtttatgcgagcccaaaaagcttg #### Cdc37l1_ID6199_6 --> 0 - 0 Original Alignment GCGGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAG aggggctttttgaggagagtgtgcgtctctatgttggtcttttcacacagGCAGAGGAAGAGGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTATGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGTTCCTTAGAATCCTTACCACAGgtaagtctagactcctctgcacagcaatgtacacctcttgtgcacagcta Alignment from CESAR GCGGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAG aggggctttttgaggagagtgtgcgtctctatgttggtcttttcacacagGCAGAGGAAGAGGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTATGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGTTCCTTAGAATCCTTACCACAGgtaagtctagactcctctgcacagcaatgtacacctcttgtgcacagcta Alignment from Spaln_aa2Genome GCGGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAG aggggctttttgaggagagtgtgcgtctctatgttggtcttttcacacagGCAGAGGAAGAGGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTATGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGTTCCTTAGAATCCTTACCACAGgtaagtctagactcctctgcacagcaatgtacacctcttgtgcacagcta Alignment from Spaln_nt2Genome GCGGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAG aggggctttttgaggagagtgtgcgtctctatgttggtcttttcacacagGCAGAGGAAGAGGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTATGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGTTCCTTAGAATCCTTACCACAGgtaagtctagactcctctgcacagcaatgtacacctcttgtgcacagcta Alignment from Pairagon GCGGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAG aggggctttttgaggagagtgtgcgtctctatgttggtcttttcacacagGCAGAGGAAGAGGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTATGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGTTCCTTAGAATCCTTACCACAGgtaagtctagactcctctgcacagcaatgtacacctcttgtgcacagcta Alignment from Exonerate_protein2genome GCGGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAG aggggctttttgaggagagtgtgcgtctctatgttggtcttttcacacagGCAGAGGAAGAGGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTATGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGTTCCTTAGAATCCTTACCACAGgtaagtctagactcctctgcacagcaatgtacacctcttgtgcacagcta Alignment from Exonerate_coding2genome GCGGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAG aggggctttttgaggagagtgtgcgtctctatgttggtcttttcacacagGCAGAGGAAGAGGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTATGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGTTCCTTAGAATCCTTACCACAGgtaagtctagactcctctgcacagcaatgtacacctcttgtgcacagcta Alignment from GeneWise GCGGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAG aggggctttttgaggagagtgtgcgtctctatgttggtcttttcacacagGCAGAGGAAGAGGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTATGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGTTCCTTAGAATCCTTACCACAGgtaagtctagactcctctgcacagcaatgtacacctcttgtgcacagcta #### Cdc42bpg_ID1574_4 --> 0 - 0 Original Alignment ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG tctgtggcacaaatgtaaaatctagcctcccacctggtttcctcttgcagACAACCTGTCTCCGGGAGGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTTTGCATTACTCATTCCAGGATGAGGAGTTCTTAgtaaaaagtcctatgtcatagaggggttaccctgacagtgctgttttttt Alignment from CESAR ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG gggttggcacaaatgtaaaatctagcctcccacctggtttcctcttgcagACAACCTGTCTCCGGGAGGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTTTGCATTACTCATTCCAGGATGAGGAGTTCTTAgtaaaaagtcctatgtcatagaggggttaccctgacagtgctgttttttt Alignment from Spaln_aa2Genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG tctgtggcacaaatgtaaaatctagcctcccacctggtttcctcttgcagACAACCTGTCTCCGGGAGGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTTTGCATTACTCATTCCAGGATGAGGAGTTCTTAgtaaaaagtcctatgtcatagaggggttaccctgacagtgctgttttttt Alignment from Spaln_nt2Genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG tctgtggcacaaatgtaaaatctagcctcccacctggtttcctcttgcagACAACCTGTCTCCGGGAGGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTTTGCATTACTCATTCCAGGATGAGGAGTTCTTAgtaaaaagtcctatgtcatagaggggttaccctgacagtgctgttttttt Alignment from Pairagon ------------------------------------------------AGACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG TCTGTGGCACAAATGTAAAATCTAGCCTCCCACCTGGTTTCCTCTTGCAGACAACCTGTCTCCGGGAGGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTTTGCATTACTCATTCCAGGATGAGGAGTTCTTAgtaaaaagtcctatgtcatagaggggttaccctgacagtgctgttttttt Alignment from Exonerate_protein2genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG tctgtggcacaaatgtaaaatctagcctcccacctggtttcctcttgcagACAACCTGTCTCCGGGAGGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTTTGCATTACTCATTCCAGGATGAGGAGTTCTTAgtaaaaagtcctatgtcatagaggggttaccctgacagtgctgttttttt Alignment from Exonerate_coding2genome tctgtggcacaaatgtaaaatctagcctcccacctggtttcctcttgcagacaacctgtctccgggaggagcgagatgttttagtgaagggagaccactgttgggtgacagctttgcattactcattccaggatgaggagttcttagtaaaaagtcctatgtcatagaggggttaccctgacagtgctgttttttt Alignment from GeneWise ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG tctgtggcacaaatgtaaaatctagcctcccacctggtttcctcttgcagACAACCTGTCTCCGGGAGGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTTTGCATTACTCATTCCAGGATGAGGAGTTCTTAgtaaaaagtcctatgtcatagaggggttaccctgacagtgctgttttttt #### Cdc42bpg_ID1582_12 --> 2 - 0 Original Alignment agACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gcttacagagcggggaatgattgcagcttttgtaaattatcctttaacagagACTTTGAAAGACAGCAAGGCTTCTCTTGCACAAGCTGATGGGCCTGATGCTAGAAGCCCTGTCCCAAACATCCAGTTACAGCAGGAGAAGGATCGCCTTCAGCAGgtaaaaattgtgatgggaattatacagtgtgttgtttgtcaacataaacc Alignment from CESAR agACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gcttacagagcggggaatgattgcagcttttgtaaattatcctttaacagagACTTTGAAAGACAGCAAGGCTTCTCTTGCACAAGCTGATGGGCCTGATGCTAGAAGCCCTGTCCCAAACATCCAGTTACAGCAGGAGAAGGATCGCCTTCAGCAGgtaaaaattgtgatgggaattatacagtgtgttgtttgtcaacataaacc Alignment from Spaln_aa2Genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gcttacagagcggggaatgattgcagcttttgtaaattatcctttaacagAGACTTTGAAAGACAGCAAGGCTTCTCTTGCACAAGCTGATGGGCCTGATGCTAGAAGCCCTGTCCCAAACATCCAGTTACAGCAGGAGAAGGATCGCCTTCAGCAGgtaaaaattgtgatgggaattatacagtgtgttgtttgtcaacataaacc Alignment from Spaln_nt2Genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gcttacagagcggggaatgattgcagcttttgtaaattatcctttaacagAGACTTTGAAAGACAGCAAGGCTTCTCTTGCACAAGCTGATGGGCCTGATGCTAGAAGCCCTGTCCCAAACATCCAGTTACAGCAGGAGAAGGATCGCCTTCAGCAGgtaaaaattgtgatgggaattatacagtgtgttgtttgtcaacataaacc Alignment from Pairagon AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gcttacagagcggggaatgattgcagcttttgtaaattatcctttaacagAGACTTTGAAAGACAGCAAGGCTTCTCTTGCACAAGCTGATGGGCCTGATGCTAGAAGCCCTGTCCCAAACATCCAGTTACAGCAGGAGAAGGATCGCCTTCAGCAGgtaaaaattgtgatgggaattatacagtgtgttgtttgtcaacataaacc Alignment from Exonerate_protein2genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gcttacagagcggggaatgattgcagcttttgtaaattatcctttaacagAGACTTTGAAAGACAGCAAGGCTTCTCTTGCACAAGCTGATGGGCCTGATGCTAGAAGCCCTGTCCCAAACATCCAGTTACAGCAGGAGAAGGATCGCCTTCAGCAGgtaaaaattgtgatgggaattatacagtgtgttgtttgtcaacataaacc Alignment from Exonerate_coding2genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gcttacagagcggggaatgattgcagcttttgtaaattatcctttaacagAGACTTTGAAAGACAGCAAGGCTTCTCTTGCACAAGCTGATGGGCCTGATGCTAGAAGCCCTGTCCCAAACATCCAGTTACAGCAGGAGAAGGATCGCCTTCAGCAGgtaaaaattgtgatgggaattatacagtgtgttgtttgtcaacataaacc Alignment from GeneWise AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gcttacagagcggggaatgattgcagcttttgtaaattatcctttaacagAGACTTTGAAAGACAGCAAGGCTTCTCTTGCACAAGCTGATGGGCCTGATGCTAGAAGCCCTGTCCCAAACATCCAGTTACAGCAGGAGAAGGATCGCCTTCAGCAGgtaaaaattgtgatgggaattatacagtgtgttgtttgtcaacataaacc #### Cdc42bpg_ID1587_17 --> 0 - 2 Original Alignment CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCtg gaaaccattgggtaacgaggattaacatttttactttcttcctgaaacagTTGGCAGGAGAGCTGGAACTGGAACTTCAGACCAAGCAACGTCTGGAGGGCGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCtggtgagactacacagctgggtggcaccattgatactgtgagccctgcccca Alignment from CESAR CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCtg gaaaccattgggtaacgaggattaacatttttactttcttcctgaaacagTTGGCAGGAGAGCTGGAACTGGAACTTCAGACCAAGCAACGTCTGGAGGGCGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCtggtgagactacacagctgggtggcaccattgatactgtgagccctttctct Alignment from Spaln_aa2Genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gaaaccattgggtaacgaggattaacatttttactttcttcctgaaacagTTGGCAGGAGAGCTGGAACTGGAACTTCAGACCAAGCAACGTCTGGAGGGCGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtgagactacacagctgggtggcaccattgatactgtgagccctgcccca Alignment from Spaln_nt2Genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gaaaccattgggtaacgaggattaacatttttactttcttcctgaaacagTTGGCAGGAGAGCTGGAACTGGAACTTCAGACCAAGCAACGTCTGGAGGGCGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtgagactacacagctgggtggcaccattgatactgtgagccctgcccca Alignment from Pairagon CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gaaaccattgggtaacgaggattaacatttttactttcttcctgaaacagTTGGCAGGAGAGCTGGAACTGGAACTTCAGACCAAGCAACGTCTGGAGGGCGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtgagactacacagctgggtggcaccattgatactgtgagccctgcccca Alignment from Exonerate_protein2genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gaaaccattgggtaacgaggattaacatttttactttcttcctgaaacagTTGGCAGGAGAGCTGGAACTGGAACTTCAGACCAAGCAACGTCTGGAGGGCGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtgagactacacagctgggtggcaccattgatactgtgagccctgcccca Alignment from Exonerate_coding2genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gaaaccattgggtaacgaggattaacatttttactttcttcctgaaacagTTGGCAGGAGAGCTGGAACTGGAACTTCAGACCAAGCAACGTCTGGAGGGCGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtgagactacacagctgggtggcaccattgatactgtgagccctgcccca Alignment from GeneWise CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gaaaccattgggtaacgaggattaacatttttactttcttcctgaaacagTTGGCAGGAGAGCTGGAACTGGAACTTCAGACCAAGCAACGTCTGGAGGGCGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtgagactacacagctgggtggcaccattgatactgtgagccctgcccca #### Cdc42bpg_ID1592_22 --> 0 - 0 Original Alignment AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG acgataagcataaatcctgtcctgactcggcctcttacttttccccccagAAAGACTTTGCTAAGGACCCAGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCAGAAGCAGAGCTTAGACCAGAGGGCCGCCGCAGTCTACGCATGGGTgtaaggtctataaccaactagaatataactacaggggatttcctcattga Alignment from CESAR AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG acgataagcataaatcctgtcctgactcggcctcttacttttccccccagAAAGACTTTGCTAAGGACCCAGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCAGAAGCAGAGCTTAGACCAGAGGGCCGCCGCAGTCTACGCATGGGTgtaaggtctataaccaactagaatataactacaggggatttcctcattga Alignment from Spaln_aa2Genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG acgataagcataaatcctgtcctgactcggcctcttacttttccccccagAAAGACTTTGCTAAGGACCCAGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCAGAAGCAGAGCTTAGACCAGAGGGCCGCCGCAGTCTACGCATGGGTgtaaggtctataaccaactagaatataactacaggggatttcctcattga Alignment from Spaln_nt2Genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG acgataagcataaatcctgtcctgactcggcctcttacttttccccccagAAAGACTTTGCTAAGGACCCAGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCAGAAGCAGAGCTTAGACCAGAGGGCCGCCGCAGTCTACGCATGGGTgtaaggtctataaccaactagaatataactacaggggatttcctcattga Alignment from Pairagon AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG acgataagcataaatcctgtcctgactcggcctcttacttttccccccagAAAGACTTTGCTAAGGACCCAGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCAGAAGCAGAGCTTAGACCAGAGGGCCGCCGCAGTCTACGCATGGGTgtaaggtctataaccaactagaatataactacaggggatttcctcattga Alignment from Exonerate_protein2genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG acgataagcataaatcctgtcctgactcggcctcttacttttccccccagAAAGACTTTGCTAAGGACCCAGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCAGAAGCAGAGCTTAGACCAGAGGGCCGCCGCAGTCTACGCATGGGTgtaaggtctataaccaactagaatataactacaggggatttcctcattga Alignment from Exonerate_coding2genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG acgataagcataaatcctgtcctgactcggcctcttacttttccccccagAAAGACTTTGCTAAGGACCCAGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCAGAAGCAGAGCTTAGACCAGAGGGCCGCCGCAGTCTACGCATGGGTgtaaggtctataaccaactagaatataactacaggggatttcctcattga Alignment from GeneWise AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG acgataagcataaatcctgtcctgactcggcctcttacttttccccccagAAAGACTTTGCTAAGGACCCAGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCAGAAGCAGAGCTTAGACCAGAGGGCCGCCGCAGTCTACGCATGGGTgtaaggtctataaccaactagaatataactacaggggatttcctcattga #### Cdc42bpg_ID1596_26 --> 0 - 2 Original Alignment GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAag GCTTTTTGTCAgtaagatgagggggctggagggataccctcccatttcagGTACGACAGCCATCATGTGTTCGATGGGACTGGCAGCGGGTGTATGCTGCTCTCAGTGACTCCCGTTTGTTATTGTTTGATGCCCCTGACCCTCGTGGTAGCCTGGCAAGTGGGATCCTTCTTCAGGCCTTAGATCTAaggtaagtgcaggcccacaggacatagggagtctacagcagggtggtctgtc Alignment from CESAR GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAag GCTTTTTGTCAgtaagttgagggggctggagggataccctcccatttcagGTACGACAGCCATCATGTGTTCGATGGGACTGGCAGCGGGTGTATGCTGCTCTCAGTGACTCCCGTTTGTTATTGTTTGATGCCCCTGACCCTCGTGGTAGCCTGGCAAGTGGGATCCTTCTTCAGGCCTTAGATCTAaggtaagtgcaggcccacaggacatagggagtctacagcagggtggtctgtc Alignment from Spaln_aa2Genome GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTTTTTGTCAgtaagatgagggggctggagggataccctcccatttcagGTACGACAGCCATCATGTGTTCGATGGGACTGGCAGCGGGTGTATGCTGCTCTCAGTGACTCCCGTTTGTTATTGTTTGATGCCCCTGACCCTCGTGGTAGCCTGGCAAGTGGGATCCTTCTTCAGGCCTTAGATCTAAGgtaagtgcaggcccacaggacatagggagtctacagcagggtggtctgtc Alignment from Spaln_nt2Genome GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTTTTTGTCAgtaagatgagggggctggagggataccctcccatttcagGTACGACAGCCATCATGTGTTCGATGGGACTGGCAGCGGGTGTATGCTGCTCTCAGTGACTCCCGTTTGTTATTGTTTGATGCCCCTGACCCTCGTGGTAGCCTGGCAAGTGGGATCCTTCTTCAGGCCTTAGATCTAAGgtaagtgcaggcccacaggacatagggagtctacagcagggtggtctgtc Alignment from Pairagon GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTTTTTGTCAgtaagatgagggggctggagggataccctcccatttcagGTACGACAGCCATCATGTGTTCGATGGGACTGGCAGCGGGTGTATGCTGCTCTCAGTGACTCCCGTTTGTTATTGTTTGATGCCCCTGACCCTCGTGGTAGCCTGGCAAGTGGGATCCTTCTTCAGGCCTTAGATCTAAGgtaagtgcaggcccacaggacatagggagtctacagcagggtggtctgtc Alignment from Exonerate_protein2genome GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTTTTTGTCAgtaagatgagggggctggagggataccctcccatttcagGTACGACAGCCATCATGTGTTCGATGGGACTGGCAGCGGGTGTATGCTGCTCTCAGTGACTCCCGTTTGTTATTGTTTGATGCCCCTGACCCTCGTGGTAGCCTGGCAAGTGGGATCCTTCTTCAGGCCTTAGATCTAAGgtaagtgcaggcccacaggacatagggagtctacagcagggtggtctgtc Alignment from Exonerate_coding2genome GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTTTTTGTCAgtaagatgagggggctggagggataccctcccatttcagGTACGACAGCCATCATGTGTTCGATGGGACTGGCAGCGGGTGTATGCTGCTCTCAGTGACTCCCGTTTGTTATTGTTTGATGCCCCTGACCCTCGTGGTAGCCTGGCAAGTGGGATCCTTCTTCAGGCCTTAGATCTAAGgtaagtgcaggcccacaggacatagggagtctacagcagggtggtctgtc Alignment from GeneWise GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTTTTTGTCAgtaagatgagggggctggagggataccctcccatttcagGTACGACAGCCATCATGTGTTCGATGGGACTGGCAGCGGGTGTATGCTGCTCTCAGTGACTCCCGTTTGTTATTGTTTGATGCCCCTGACCCTCGTGGTAGCCTGGCAAGTGGGATCCTTCTTCAGGCCTTAGATCTAAGgtaagtgcaggcccacaggacatagggagtctacagcagggtggtctgtc #### Cdc42bpg_ID1604_34 --> 1 - 0 Original Alignment gGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ataactcattgtcagctatttatcaataattgtggctgttttggttttaggGAGATGTTGAAAGACCCCTTCGTGCGGTTCAAATTCATTTCACCACCCACCAACTTCATTCACCTGGTTCATGTGGGACATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGTgtaagtcttgtgcaggggattgctagacctgtcacaaagcttcaatcatg Alignment from CESAR gGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ataactcattgtcagctatttatcaataattgtggctgttttggttttaggGAGATGTTGAAAGACCCCTTCGTGCGGTTCAAATTCATTTCACCACCCACCAACTTCATTCACCTGGTTCATGTGGGACATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGTgtaagtcttgtgcaggggattgctagacctgtcacaaagcttcaatcatg Alignment from Spaln_aa2Genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ataactcattgtcagctatttatcaataattgtggctgttttggttttagGGAGATGTTGAAAGACCCCTTCGTGCGGTTCAAATTCATTTCACCACCCACCAACTTCATTCACCTGGTTCATGTGGGACATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGTgtaagtcttgtgcaggggattgctagacctgtcacaaagcttcaatcatg Alignment from Spaln_nt2Genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ataactcattgtcagctatttatcaataattgtggctgttttggttttagGGAGATGTTGAAAGACCCCTTCGTGCGGTTCAAATTCATTTCACCACCCACCAACTTCATTCACCTGGTTCATGTGGGACATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGTgtaagtcttgtgcaggggattgctagacctgtcacaaagcttcaatcatg Alignment from Pairagon GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ataactcattgtcagctatttatcaataattgtggctgttttggttttagGGAGATGTTGAAAGACCCCTTCGTGCGGTTCAAATTCATTTCACCACCCACCAACTTCATTCACCTGGTTCATGTGGGACATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGTgtaagtcttgtgcaggggattgctagacctgtcacaaagcttcaatcatg Alignment from Exonerate_protein2genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ataactcattgtcagctatttatcaataattgtggctgttttggttttagGGAGATGTTGAAAGACCCCTTCGTGCGGTTCAAATTCATTTCACCACCCACCAACTTCATTCACCTGGTTCATGTGGGACATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGTgtaagtcttgtgcaggggattgctagacctgtcacaaagcttcaatcatg Alignment from Exonerate_coding2genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ataactcattgtcagctatttatcaataattgtggctgttttggttttagGGAGATGTTGAAAGACCCCTTCGTGCGGTTCAAATTCATTTCACCACCCACCAACTTCATTCACCTGGTTCATGTGGGACATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGTgtaagtcttgtgcaggggattgctagacctgtcacaaagcttcaatcatg Alignment from GeneWise GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ataactcattgtcagctatttatcaataattgtggctgttttggttttagGGAGATGTTGAAAGACCCCTTCGTGCGGTTCAAATTCATTTCACCACCCACCAACTTCATTCACCTGGTTCATGTGGGACATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGTgtaagtcttgtgcaggggattgctagacctgtcacaaagcttcaatcatg #### Cdca5_ID1430_4 --> 0 - 0 Original Alignment GTCCCAGATGTCCACACGGTTCGAAGAAGTCCTAGG actgagatgtccaaaaaggctctagctatatgcgtgttctttgctaacagGTACCAGATGTACACACAGTCAGAAGAACTCCTAGGgtaagttcaggtccatttgctatttttttatggtcactgttaaagaggtg Alignment from CESAR GTCCCAGATGTCCACACGGTTCGAAGAAGTCCTAGG actgagatgtccaaaaaggctctagctatatgcgtgttctttgctaacagGTACCAGATGTACACACAGTCAGAAGAACTCCTAGGgtaagttcaggtccatttgctatttttttatggtcactgttaaagaggtg Alignment from Spaln_aa2Genome GTCCCAGATGTCCACACGGTTCGAAGAAGTCCTAGG actgagatgtccaaaaaggctctagctatatgcgtgttctttgctaacagGTACCAGATGTACACACAGTCAGAAGAACTCCTAGGgtaagttcaggtccatttgctatttttttatggtcactgttaaagaggtg Alignment from Spaln_nt2Genome GTCCCAGATGTCCACACGGTTCGAAGAAGTCCTAGG actgagatgtccaaaaaggctctagctatatgcgtgttctttgctaacagGTACCAGATGTACACACAGTCAGAAGAACTCCTAGGgtaagttcaggtccatttgctatttttttatggtcactgttaaagaggtg Alignment from Pairagon GTCCCAGATGTCCACACGGTTCGAAGAAGTCCTAGG actgagatgtccaaaaaggctctagctatatgcgtgttctttgctaacagGTACCAGATGTACACACAGTCAGAAGAACTCCTAGGgtaagttcaggtccatttgctatttttttatggtcactgttaaagaggtg Alignment from Exonerate_protein2genome GTCCCAGATGTCCACACGGTTCGAAGAAGTCCTAGG actgagatgtccaaaaaggctctagctatatgcgtgttctttgctaacagGTACCAGATGTACACACAGTCAGAAGAACTCCTAGGgtaagttcaggtccatttgctatttttttatggtcactgttaaagaggtg Alignment from Exonerate_coding2genome actgagatgtccaaaaaggctctagctatatgcgtgttctttgctaacaggtaccagatgtacacacagtcagaagaactcctagggtaagttcaggtccatttgctatttttttatggtcactgttaaagaggtg Alignment from GeneWise GTCCCAGATGTCCACACGGTTCGAAGAAGTCCTAGG actgagatgtccaaaaaggctctagctatatgcgtgttctttgctaacagGTACCAGATGTACACACAGTCAGAAGAACTCCTAGGgtaagttcaggtccatttgctatttttttatggtcactgttaaagaggtg #### Cep55_ID7512_7 --> 0 - 0 Original Alignment ATGCAGGCATGTACTCTAGACTTTGAAAATGAAAAACTCGACCGCCAGAATATGCAGCATCAACTCTATGTGATTCTTAAGGAACTCCGAAAAGCAAAAAGTCAAATAACACAGTTGGAATCCTTG aagcctgtatgtcaaccaggaatgcaactgagtgtccgccctattggcagATGCAGGCATGTACTCTAGACATTGAAAATGAAAAACTCGACCACCAAAATATGCAGCGTCAACTCTATGTGATCCTTAAGGAACTCCGAAGAGCAAAAAGCCAGATAATACAGTTGGAATCCCTCgtaagcttaggggggtccacaacagcttttgtttcctcattgcacaataa Alignment from CESAR ATGCAGGCATGTACTCTAGACTTTGAAAATGAAAAACTCGACCGCCAGAATATGCAGCATCAACTCTATGTGATTCTTAAGGAACTCCGAAAAGCAAAAAGTCAAATAACACAGTTGGAATCCTTG aagcctgtatgtcaaccaggaatgcaactgagtgtccgccctattggcagATGCAGGCATGTACTCTAGACATTGAAAATGAAAAACTCGACCACCAAAATATGCAGCGTCAACTCTATGTGATCCTTAAGGAACTCCGAAGAGCAAAAAGCCAGATAATACAGTTGGAATCCCTCgtaagcttaggggggtccacaacagcttttgtttcctcattgcacaataa Alignment from Spaln_aa2Genome ATGCAGGCATGTACTCTAGACTTTGAAAATGAAAAACTCGACCGCCAGAATATGCAGCATCAACTCTATGTGATTCTTAAGGAACTCCGAAAAGCAAAAAGTCAAATAACACAGTTGGAATCCTTG aagcctgtatgtcaaccaggaatgcaactgagtgtccgccctattggcagATGCAGGCATGTACTCTAGACATTGAAAATGAAAAACTCGACCACCAAAATATGCAGCGTCAACTCTATGTGATCCTTAAGGAACTCCGAAGAGCAAAAAGCCAGATAATACAGTTGGAATCCCTCgtaagcttaggggggtccacaacagcttttgtttcctcattgcacaataa Alignment from Spaln_nt2Genome ATGCAGGCATGTACTCTAGACTTTGAAAATGAAAAACTCGACCGCCAGAATATGCAGCATCAACTCTATGTGATTCTTAAGGAACTCCGAAAAGCAAAAAGTCAAATAACACAGTTGGAATCCTTG aagcctgtatgtcaaccaggaatgcaactgagtgtccgccctattggcagATGCAGGCATGTACTCTAGACATTGAAAATGAAAAACTCGACCACCAAAATATGCAGCGTCAACTCTATGTGATCCTTAAGGAACTCCGAAGAGCAAAAAGCCAGATAATACAGTTGGAATCCCTCgtaagcttaggggggtccacaacagcttttgtttcctcattgcacaataa Alignment from Pairagon ATGCAGGCATGTACTCTAGACTTTGAAAATGAAAAACTCGACCGCCAGAATATGCAGCATCAACTCTATGTGATTCTTAAGGAACTCCGAAAAGCAAAAAGTCAAATAACACAGTTGGAATCCTTG aagcctgtatgtcaaccaggaatgcaactgagtgtccgccctattggcagATGCAGGCATGTACTCTAGACATTGAAAATGAAAAACTCGACCACCAAAATATGCAGCGTCAACTCTATGTGATCCTTAAGGAACTCCGAAGAGCAAAAAGCCAGATAATACAGTTGGAATCCCTCgtaagcttaggggggtccacaacagcttttgtttcctcattgcacaataa Alignment from Exonerate_protein2genome ATGCAGGCATGTACTCTAGACTTTGAAAATGAAAAACTCGACCGCCAGAATATGCAGCATCAACTCTATGTGATTCTTAAGGAACTCCGAAAAGCAAAAAGTCAAATAACACAGTTGGAATCCTTG aagcctgtatgtcaaccaggaatgcaactgagtgtccgccctattggcagATGCAGGCATGTACTCTAGACATTGAAAATGAAAAACTCGACCACCAAAATATGCAGCGTCAACTCTATGTGATCCTTAAGGAACTCCGAAGAGCAAAAAGCCAGATAATACAGTTGGAATCCCTCgtaagcttaggggggtccacaacagcttttgtttcctcattgcacaataa Alignment from Exonerate_coding2genome ATGCAGGCATGTACTCTAGACTTTGAAAATGAAAAACTCGACCGCCAGAATATGCAGCATCAACTCTATGTGATTCTTAAGGAACTCCGAAAAGCAAAAAGTCAAATAACACAGTTGGAATCCTTG aagcctgtatgtcaaccaggaatgcaactgagtgtccgccctattggcagATGCAGGCATGTACTCTAGACATTGAAAATGAAAAACTCGACCACCAAAATATGCAGCGTCAACTCTATGTGATCCTTAAGGAACTCCGAAGAGCAAAAAGCCAGATAATACAGTTGGAATCCCTCgtaagcttaggggggtccacaacagcttttgtttcctcattgcacaataa Alignment from GeneWise ATGCAGGCATGTACTCTAGACTTTGAAAATGAAAAACTCGACCGCCAGAATATGCAGCATCAACTCTATGTGATTCTTAAGGAACTCCGAAAAGCAAAAAGTCAAATAACACAGTTGGAATCCTTG aagcctgtatgtcaaccaggaatgcaactgagtgtccgccctattggcagATGCAGGCATGTACTCTAGACATTGAAAATGAAAAACTCGACCACCAAAATATGCAGCGTCAACTCTATGTGATCCTTAAGGAACTCCGAAGAGCAAAAAGCCAGATAATACAGTTGGAATCCCTCgtaagcttaggggggtccacaacagcttttgtttcctcattgcacaataa #### Cep78_ID3976_10 --> 1 - 0 Original Alignment gAGTTCTTCATTAATCAAAACTCGTGATCTATCAAATCACCTGAAG tgacttattgtgtgcatgcattgcgattccctcttggaaatcggttttaggAGTTCTTCATTAATCAAGACTCGTGATCTATCCAATCACCTGAAGgtaatgtttagttacattttgatgtgagccacaataagtgttcattttga Alignment from CESAR gAGTTCTTCATTAATCAAAACTCGTGATCTATCAAATCACCTGAAG tgacttattgtgtgcatgcattgcgattccctcttggaaatcggttttaggAGTTCTTCATTAATCAAGACTCGTGATCTATCCAATCACCTGAAGgtaatgtttagttacattttgatgtgagccacaataagtgttcattttga Alignment from Spaln_aa2Genome GAGTTCTTCATTAATCAAAACTCGTGATCTATCAAATCACCTGAAG tgacttattgtgtgcatgcattgcgattccctcttggaaatcggttttagGAGTTCTTCATTAATCAAGACTCGTGATCTATCCAATCACCTGAAGgtaatgtttagttacattttgatgtgagccacaataagtgttcattttga Alignment from Spaln_nt2Genome GAGTTCTTCATTAATCAAAACTCGTGATCTATCAAATCACCTGAAG tgacttattgtgtgcatgcattgcgattccctcttggaaatcggttttagGAGTTCTTCATTAATCAAGACTCGTGATCTATCCAATCACCTGAAGgtaatgtttagttacattttgatgtgagccacaataagtgttcattttga Alignment from Pairagon GAGTTCTTCATTAATCAAAACTCGTGATCTATCAAATCACCTGAAG tgacttattgtgtgcatgcattgcgattccctcttggaaatcggttttagGAGTTCTTCATTAATCAAGACTCGTGATCTATCCAATCACCTGAAGgtaatgtttagttacattttgatgtgagccacaataagtgttcattttga Alignment from Exonerate_protein2genome GAGTTCTTCATTAATCAAAACTCGTGATCTATCAAATCACCTGAAG tgacttattgtgtgcatgcattgcgattccctcttggaaatcggttttagGAGTTCTTCATTAATCAAGACTCGTGATCTATCCAATCACCTGAAGgtaatgtttagttacattttgatgtgagccacaataagtgttcattttga Alignment from Exonerate_coding2genome GAGTTCTTCATTAATCAAAACTCGTGATCTATCAAATCACCTGAAG tgacttattgtgtgcatgcattgcgattccctcttggaaatcggttttagGAGTTCTTCATTAATCAAGACTCGTGATCTATCCAATCACCTGAAGgtaatgtttagttacattttgatgtgagccacaataagtgttcattttga Alignment from GeneWise GAGTTCTTCATTAATCAAAACTCGTGATCTATCAAATCACCTGAAG tgacttattgtgtgcatgcattgcgattccctcttggaaatcggttttagGAGTTCTTCATTAATCAAGACTCGTGATCTATCCAATCACCTGAAGgtaatgtttagttacattttgatgtgagccacaataagtgttcattttga #### Chuk_ID8909_19 --> 0 - 2 Original Alignment ACACAGAGTTCTGCCCGCTCTCTTGTAGGATACAGTCTAGAAGGCACAGTAACCCCTCCAGTATCAGCATGGCTGCCCCCTACATTAGCAGACCGTGAACATCCTCTGACATGTGTGGTAACTCCTCAAGATgg cacatacagacaggtgctgatggataactgtatatcatacttgattttagACACTGAGTTCTGCTCGCTCTCTCCTTGGATACAGTCTAGAAGGCACTGTAACACCTCCAGTCTCAGTATGGTTGCCTCCAACAATAGCTGACCGTGAACATCCTCTGATATGTATGGTCACCCTTCAAGATgggtaatgttaccatataacaagttaagccttgggataagaaggacaatagg Alignment from CESAR ACACAGAGTTCTGCCCGCTCTCTTGTAGGATACAGTCTAGAAGGCACAGTAACCCCTCCAGTATCAGCATGGCTGCCCCCTACATTAGCAGACCGTGAACATCCTCTGACATGTGTGGTAACTCCTCAAGATgg cacatacagacaggtgctgatggataactgtatatcatacttgattttagACACTGAGTTCTGCTCGCTCTCTCCTTGGATACAGTCTAGAAGGCACTGTAACACCTCCAGTCTCAGTATGGTTGCCTCCAACAATAGCTGACCGTGAACATCCTCTGATATGTATGGTCACCCTTCAAGATgggtaatgttaccatataacaagttaagccttgggataagaaggacaatagg Alignment from Spaln_aa2Genome ACACAGAGTTCTGCCCGCTCTCTTGTAGGATACAGTCTAGAAGGCACAGTAACCCCTCCAGTATCAGCATGGCTGCCCCCTACATTAGCAGACCGTGAACATCCTCTGACATGTGTGGTAACTCCTCAAGATGG cacatacagacaggtgctgatggataactgtatatcatacttgattttagACACTGAGTTCTGCTCGCTCTCTCCTTGGATACAGTCTAGAAGGCACTGTAACACCTCCAGTCTCAGTATGGTTGCCTCCAACAATAGCTGACCGTGAACATCCTCTGATATGTATGGTCACCCTTCAAGATGGgtaatgttaccatataacaagttaagccttgggataagaaggacaatagg Alignment from Spaln_nt2Genome ACACAGAGTTCTGCCCGCTCTCTTGTAGGATACAGTCTAGAAGGCACAGTAACCCCTCCAGTATCAGCATGGCTGCCCCCTACATTAGCAGACCGTGAACATCCTCTGACATGTGTGGTAACTCCTCAAGATGG cacatacagacaggtgctgatggataactgtatatcatacttgattttagACACTGAGTTCTGCTCGCTCTCTCCTTGGATACAGTCTAGAAGGCACTGTAACACCTCCAGTCTCAGTATGGTTGCCTCCAACAATAGCTGACCGTGAACATCCTCTGATATGTATGGTCACCCTTCAAGATGGgtaatgttaccatataacaagttaagccttgggataagaaggacaatagg Alignment from Pairagon ACACAGAGTTCTGCCCGCTCTCTTGTAGGATACAGTCTAGAAGGCACAGTAACCCCTCCAGTATCAGCATGGCTGCCCCCTACATTAGCAGACCGTGAACATCCTCTGACATGTGTGGTAACTCCTCAAGATGG cacatacagacaggtgctgatggataactgtatatcatacttgattttagACACTGAGTTCTGCTCGCTCTCTCCTTGGATACAGTCTAGAAGGCACTGTAACACCTCCAGTCTCAGTATGGTTGCCTCCAACAATAGCTGACCGTGAACATCCTCTGATATGTATGGTCACCCTTCAAGATGGgtaatgttaccatataacaagttaagccttgggataagaaggacaatagg Alignment from Exonerate_protein2genome ACACAGAGTTCTGCCCGCTCTCTTGTAGGATACAGTCTAGAAGGCACAGTAACCCCTCCAGTATCAGCATGGCTGCCCCCTACATTAGCAGACCGTGAACATCCTCTGACATGTGTGGTAACTCCTCAAGATGG cacatacagacaggtgctgatggataactgtatatcatacttgattttagACACTGAGTTCTGCTCGCTCTCTCCTTGGATACAGTCTAGAAGGCACTGTAACACCTCCAGTCTCAGTATGGTTGCCTCCAACAATAGCTGACCGTGAACATCCTCTGATATGTATGGTCACCCTTCAAGATGGgtaatgttaccatataacaagttaagccttgggataagaaggacaatagg Alignment from Exonerate_coding2genome ACACAGAGTTCTGCCCGCTCTCTTGTAGGATACAGTCTAGAAGGCACAGTAACCCCTCCAGTATCAGCATGGCTGCCCCCTACATTAGCAGACCGTGAACATCCTCTGACATGTGTGGTAACTCCTCAAGATGG cacatacagacaggtgctgatggataactgtatatcatacttgattttagACACTGAGTTCTGCTCGCTCTCTCCTTGGATACAGTCTAGAAGGCACTGTAACACCTCCAGTCTCAGTATGGTTGCCTCCAACAATAGCTGACCGTGAACATCCTCTGATATGTATGGTCACCCTTCAAGATGGgtaatgttaccatataacaagttaagccttgggataagaaggacaatagg Alignment from GeneWise ACACAGAGTTCTGCCCGCTCTCTTGTAGGATACAGTCTAGAAGGCACAGTAACCCCTCCAGTATCAGCATGGCTGCCCCCTACATTAGCAGACCGTGAACATCCTCTGACATGTGTGGTAACTCCTCAAGATGG cacatacagacaggtgctgatggataactgtatatcatacttgattttagACACTGAGTTCTGCTCGCTCTCTCCTTGGATACAGTCTAGAAGGCACTGTAACACCTCCAGTCTCAGTATGGTTGCCTCCAACAATAGCTGACCGTGAACATCCTCTGATATGTATGGTCACCCTTCAAGATGGgtaatgttaccatataacaagttaagccttgggataagaaggacaatagg #### Chuk_ID8917_11 --> 0 - 1 Original Alignment AGAGGCTGTGATAGCTACATGGTTTATTTGTTTGATAAAAGTAAGACTGTATATGAAGGACCATTTGCATCCAGAAGTTTATCTGATTGTGTAAATTATATTg acactaggatgcgtaagtctttctgtttttattttttattacctatttagAGAGGCTGTGATAGCTACATGGTTTATTTGTTTGACAGAAGTAAGACTGTATATGAAGGACCATTTGCATCCAGAAGCTTATCTGGTTGTGTAAATTATATTggtgagatagagttctgttcacggttagaatgaaagtaaaagctgcataca Alignment from CESAR AGAGGCTGTGATAGCTACATGGTTTATTTGTTTGATAAAAGTAAGACTGTATATGAAGGACCATTTGCATCCAGAAGTTTATCTGATTGTGTAAATTATATTg acactaggatgcgtaagtctttctgtttttattttttattacctatttagAGAGGCTGTGATAGCTACATGGTTTATTTGTTTGACAGAAGTAAGACTGTATATGAAGGACCATTTGCATCCAGAAGCTTATCTGGTTGTGTAAATTATATTggtgagatagagttctgttcacggttagaatgaaagtaaaagctgcataca Alignment from Spaln_aa2Genome AGAGGCTGTGATAGCTACATGGTTTATTTGTTTGATAAAAGTAAGACTGTATATGAAGGACCATTTGCATCCAGAAGTTTATCTGATTGTGTAAATTATATTG acactaggatgcgtaagtctttctgtttttattttttattacctatttagAGAGGCTGTGATAGCTACATGGTTTATTTGTTTGACAGAAGTAAGACTGTATATGAAGGACCATTTGCATCCAGAAGCTTATCTGGTTGTGTAAATTATATTGgtgagatagagttctgttcacggttagaatgaaagtaaaagctgcataca Alignment from Spaln_nt2Genome AGAGGCTGTGATAGCTACATGGTTTATTTGTTTGATAAAAGTAAGACTGTATATGAAGGACCATTTGCATCCAGAAGTTTATCTGATTGTGTAAATTATATTG acactaggatgcgtaagtctttctgtttttattttttattacctatttagAGAGGCTGTGATAGCTACATGGTTTATTTGTTTGACAGAAGTAAGACTGTATATGAAGGACCATTTGCATCCAGAAGCTTATCTGGTTGTGTAAATTATATTGgtgagatagagttctgttcacggttagaatgaaagtaaaagctgcataca Alignment from Pairagon AGAGGCTGTGATAGCTACATGGTTTATTTGTTTGATAAAAGTAAGACTGTATATGAAGGACCATTTGCATCCAGAAGTTTATCTGATTGTGTAAATTATATTG acactaggatgcgtaagtctttctgtttttattttttattacctatttagAGAGGCTGTGATAGCTACATGGTTTATTTGTTTGACAGAAGTAAGACTGTATATGAAGGACCATTTGCATCCAGAAGCTTATCTGGTTGTGTAAATTATATTGgtgagatagagttctgttcacggttagaatgaaagtaaaagctgcataca Alignment from Exonerate_protein2genome AGAGGCTGTGATAGCTACATGGTTTATTTGTTTGATAAAAGTAAGACTGTATATGAAGGACCATTTGCATCCAGAAGTTTATCTGATTGTGTAAATTATATTG acactaggatgcgtaagtctttctgtttttattttttattacctatttagAGAGGCTGTGATAGCTACATGGTTTATTTGTTTGACAGAAGTAAGACTGTATATGAAGGACCATTTGCATCCAGAAGCTTATCTGGTTGTGTAAATTATATTGgtgagatagagttctgttcacggttagaatgaaagtaaaagctgcataca Alignment from Exonerate_coding2genome AGAGGCTGTGATAGCTACATGGTTTATTTGTTTGATAAAAGTAAGACTGTATATGAAGGACCATTTGCATCCAGAAGTTTATCTGATTGTGTAAATTATATTG acactaggatgcgtaagtctttctgtttttattttttattacctatttagAGAGGCTGTGATAGCTACATGGTTTATTTGTTTGACAGAAGTAAGACTGTATATGAAGGACCATTTGCATCCAGAAGCTTATCTGGTTGTGTAAATTATATTGgtgagatagagttctgttcacggttagaatgaaagtaaaagctgcataca Alignment from GeneWise AGAGGCTGTGATAGCTACATGGTTTATTTGTTTGATAAAAGTAAGACTGTATATGAAGGACCATTTGCATCCAGAAGTTTATCTGATTGTGTAAATTATATTG acactaggatgcgtaagtctttctgtttttattttttattacctatttagAGAGGCTGTGATAGCTACATGGTTTATTTGTTTGACAGAAGTAAGACTGTATATGAAGGACCATTTGCATCCAGAAGCTTATCTGGTTGTGTAAATTATATTGgtgagatagagttctgttcacggttagaatgaaagtaaaagctgcataca #### Chuk_ID8921_7 --> 0 - 2 Original Alignment GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCtg tcaaaaatctcaactttatagctccagaaatgattctgctttatatttagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCTACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCtggtaagtcagtgttgttcatggttgtgggaaacaccctgctgaatgagata Alignment from CESAR GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCtg tcaaaaatctcaactttatagctccagaaatgattctgctttatatttagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCTACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCtggtaagtcagtgttgttcatggttgtgggaaacaccctgctgaatgagata Alignment from Spaln_aa2Genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG tcaaaaatctcaactttatagctccagaaatgattctgctttatatttagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCTACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtaagtcagtgttgttcatggttgtgggaaacaccctgctgaatgagata Alignment from Spaln_nt2Genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACA tcaaaaatctcaactttatagctccagaaatgattctgctttatatttagGCCCCAGACCTCTTTGAAAATAAGCCATACACAgctactgtggattattggagctttggtaccatggtctttgaatgtattgctggatataggccttttttgcatcatctacagccatttacctggtaagtcagtgttgttcatggttgtgggaaacaccctgctgaatgagata Alignment from Pairagon GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG tcaaaaatctcaactttatagctccagaaatgattctgctttatatttagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCTACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtaagtcagtgttgttcatggttgtgggaaacaccctgctgaatgagata Alignment from Exonerate_protein2genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG tcaaaaatctcaactttatagctccagaaatgattctgctttatatttagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCTACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtaagtcagtgttgttcatggttgtgggaaacaccctgctgaatgagata Alignment from Exonerate_coding2genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG tcaaaaatctcaactttatagctccagaaatgattctgctttatatttagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCTACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtaagtcagtgttgttcatggttgtgggaaacaccctgctgaatgagata Alignment from GeneWise GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG tcaaaaatctcaactttatagctccagaaatgattctgctttatatttagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCTACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtaagtcagtgttgttcatggttgtgggaaacaccctgctgaatgagata #### Chuk_ID8922_6 --> 0 - 0 Original Alignment ACAATACATAAAATAATTGATTTGGGTTATGCCAAAGATGTTGATCAAGGAAGTCTCTGTACATCTTTTGTGGGAACATTGCAGTATTTG ttttgtggaacttgatgacatagttgcaccctgtctcttccttgtcacagACGGTACATAAAATAATTGATTTGGGGTATGCCAAAGATGTTGATCAAGGAAGTCTCTGTTCAACTTTTGTGGGAACATTGAAATACTTGgtgagtcaatattatgttaaccttgattgtgttacattcttggtattcca Alignment from CESAR ACAATACATAAAATAATTGATTTGGGTTATGCCAAAGATGTTGATCAAGGAAGTCTCTGTACATCTTTTGTGGGAACATTGCAGTATTTG ttttgtggaacttgatgacatagttgcaccctgtctcttccttgtcacagACGGTACATAAAATAATTGATTTGGGGTATGCCAAAGATGTTGATCAAGGAAGTCTCTGTTCAACTTTTGTGGGAACATTGAAATACTTGgtgagtcaatattatgttaaccttgattgtgttacattcttggtattcca Alignment from Spaln_aa2Genome ACAATACATAAAATAATTGATTTGGGTTATGCCAAAGATGTTGATCAAGGAAGTCTCTGTACATCTTTTGTGGGAACATTGCAGTATTTG ttttgtggaacttgatgacatagttgcaccctgtctcttccttgtcacagACGGTACATAAAATAATTGATTTGGGGTATGCCAAAGATGTTGATCAAGGAAGTCTCTGTTCAACTTTTGTGGGAACATTGAAATACTTGgtgagtcaatattatgttaaccttgattgtgttacattcttggtattcca Alignment from Spaln_nt2Genome ACAATACATAAAATAATTGATTTGGGTTATGCCAAAGATGTTGATCAAGGAAGTCTCTGTACATCTTTTGTGGGAACATTGCAGTATTTG ttttgtggaacttgatgacatagttgcaccctgtctcttccttgtcacagACGGTACATAAAATAATTGATTTGGGGTATGCCAAAGATGTTGATCAAGGAAGTCTCTGTTCAACTTTTGTGGGAACATTGAAATACTTGgtgagtcaatattatgttaaccttgattgtgttacattcttggtattcca Alignment from Pairagon ACAATACATAAAATAATTGATTTGGGTTATGCCAAAGATGTTGATCAAGGAAGTCTCTGTACATCTTTTGTGGGAACATTGCAGTATTTG ttttgtggaacttgatgacatagttgcaccctgtctcttccttgtcacagACGGTACATAAAATAATTGATTTGGGGTATGCCAAAGATGTTGATCAAGGAAGTCTCTGTTCAACTTTTGTGGGAACATTGAAATACTTGgtgagtcaatattatgttaaccttgattgtgttacattcttggtattcca Alignment from Exonerate_protein2genome ACAATACATAAAATAATTGATTTGGGTTATGCCAAAGATGTTGATCAAGGAAGTCTCTGTACATCTTTTGTGGGAACATTGCAGTATTTG ttttgtggaacttgatgacatagttgcaccctgtctcttccttgtcacagACGGTACATAAAATAATTGATTTGGGGTATGCCAAAGATGTTGATCAAGGAAGTCTCTGTTCAACTTTTGTGGGAACATTGAAATACTTGgtgagtcaatattatgttaaccttgattgtgttacattcttggtattcca Alignment from Exonerate_coding2genome ACAATACATAAAATAATTGATTTGGGTTATGCCAAAGATGTTGATCAAGGAAGTCTCTGTACATCTTTTGTGGGAACATTGCAGTATTTG ttttgtggaacttgatgacatagttgcaccctgtctcttccttgtcacagACGGTACATAAAATAATTGATTTGGGGTATGCCAAAGATGTTGATCAAGGAAGTCTCTGTTCAACTTTTGTGGGAACATTGAAATACTTGgtgagtcaatattatgttaaccttgattgtgttacattcttggtattcca Alignment from GeneWise ACAATACATAAAATAATTGATTTGGGTTATGCCAAAGATGTTGATCAAGGAAGTCTCTGTACATCTTTTGTGGGAACATTGCAGTATTTG ttttgtggaacttgatgacatagttgcaccctgtctcttccttgtcacagACGGTACATAAAATAATTGATTTGGGGTATGCCAAAGATGTTGATCAAGGAAGTCTCTGTTCAACTTTTGTGGGAACATTGAAATACTTGgtgagtcaatattatgttaaccttgattgtgttacattcttggtattcca #### Cnnm1_ID8731_3 --> 2 - 1 Original Alignment ctGACAATCGGAAA---AAGCAGAGGGTCCCACACCGGGAGAGAAGGCGGCATGATTTCTCTCTGTTCAAGCTTTCAGACTCCGAGATCAGAGTCAAGATCTCGCCACAGCTGCTGCTTGCCACACACCGCTTCATGGCCACAg caactataggacaatggggtagacagtcgtgtatctatttttccacccagcaGACAATCGCAAGAAAAAAGAAAGAGTCCCCCACCAGGAGAGAAGGTGGCATGATTTTTCTCTGTTCAAGCTCTCTGATTCTGGGATCAGAGTCAAAATCTCGCCACAGCTACTCCTCACTACACACCTTTTCATGGGTTCCagtaagataaaccctatccagtactcatatcccctcatcctgcatattcaa Alignment from CESAR ctGACAATCGG---AAAAAGCAGAGGGTCCCACACCGGGAGAGAAGGCGGCATGATTTCTCTCTGTTCAAGCTTTCAGACTCCGAGATCAGAGTCAAGATCTCGCCACAGCTGCTGCTTGCCACACACCGCTTCATGGCCACAg caactataggacaatggggtagacagtcgtgtatctatttttccacccagcaGACAATCGCAAGAAAAAAGAAAGAGTCCCCCACCAGGAGAGAAGGTGGCATGATTTTTCTCTGTTCAAGCTCTCTGATTCTGGGATCAGAGTCAAAATCTCGCCACAGCTACTCCTCACTACACACCTTTTCATGGGTTCCagtaagataaaccctatccagtactcatatcccctcatcctgcatattcaa Alignment from Spaln_aa2Genome CTGACAATCGGAAAAAGCAG---AGGGTCCCACACCGGGAGAGAAGGCGGCATGATTTCTCTCTGTTCAAGCTTTCAGACTCCGAGATCAGAGTCAAGATCTCGCCACAGCTGCTGCTTGCCACACACCGCTTCATGGCCACAG caactataggacaatggggtagacagtcgtgtatctatttttccacccagCAGACAATCGCAAGAAAAAAGAAAGAGTCCCCCACCAGGAGAGAAGGTGGCATGATTTTTCTCTGTTCAAGCTCTCTGATTCTGGGATCAGAGTCAAAATCTCGCCACAGCTACTCCTCACTACACACCTTTTCATGGGTTCCAgtaagataaaccctatccagtactcatatcccctcatcctgcatattcaa Alignment from Spaln_nt2Genome CTGACAATCG---GAAAAAGCAGAGGGTCCCACACCGGGAGAGAAGGCGGCATGATTTCTCTCTGTTCAAGCTTTCAGACTCCGAGATCAGAGTCAAGATCTCGCCACAGCTGCTGCTTGCCACACACCGCTTCATGGCCACAG caactataggacaatggggtagacagtcgtgtatctatttttccacccagCAGACAATCGCAAGAAAAAAGAAAGAGTCCCCCACCAGGAGAGAAGGTGGCATGATTTTTCTCTGTTCAAGCTCTCTGATTCTGGGATCAGAGTCAAAATCTCGCCACAGCTACTCCTCACTACACACCTTTTCATGGGTTCCAgtaagataaaccctatccagtactcatatcccctcatcctgcatattcaa Alignment from Pairagon CTGACAATCG---GAAAAAGCAGAGGGTCCCACACCGGGAGAGAAGGCGGCATGATTTCTCTCTGTTCAAGCTTTCAGACTCCGAGATCAGAGTCAAGATCTCGCCACAGCTGCTGCTTGCCACACACCGCTTCATGG---CCA caactataggacaatggggtagacagtcgtgtatctatttttccacccagCAGACAATCGCAAGAAAAAAGAAAGAGTCCCCCACCAGGAGAGAAGGTGGCATGATTTTTCTCTGTTCAAGCTCTCTGATTCTGGGATCAGAGTCAAAATCTCGCCACAGCTACTCCTCACTACACACCTTTTCATGGGTTCCAgtaagataaaccctatccagtactcatatcccctcatcctgcatattcaa Alignment from Exonerate_protein2genome CTGACAATCGG---AAAAAGCAGAGGGTCCCACACCGGGAGAGAAGGCGGCATGATTTCTCTCTGTTCAAGCTTTCAGACTCCGAGATCAGAGTCAAGATCTCGCCACAGCTGCTGCTTGCCACACACCGCTTCATGGCCACAG caactataggacaatggggtagacagtcgtgtatctatttttccacccagCAGACAATCGCAAGAAAAAAGAAAGAGTCCCCCACCAGGAGAGAAGGTGGCATGATTTTTCTCTGTTCAAGCTCTCTGATTCTGGGATCAGAGTCAAAATCTCGCCACAGCTACTCCTCACTACACACCTTTTCATGGGTTCCAgtaagataaaccctatccagtactcatatcccctcatcctgcatattcaa Alignment from Exonerate_coding2genome CTGACAATCGG---AAAAAGCAGAGGGTCCCACACCGGGAGAGAAGGCGGCATGATTTCTCTCTGTTCAAGCTTTCAGACTCCGAGATCAGAGTCAAGATCTCGCCACAGCTGCTGCTTGCCACACACCGCTTCATGGCCACAG caactataggacaatggggtagacagtcgtgtatctatttttccacccagCAGACAATCGCAAGAAAAAAGAAAGAGTCCCCCACCAGGAGAGAAGGTGGCATGATTTTTCTCTGTTCAAGCTCTCTGATTCTGGGATCAGAGTCAAAATCTCGCCACAGCTACTCCTCACTACACACCTTTTCATGGGTTCCAgtaagataaaccctatccagtactcatatcccctcatcctgcatattcaa Alignment from GeneWise CTGACAATCGGAAAAAG---CAGAGGGTCCCACACCGGGAGAGAAGGCGGCATGATTTCTCTCTGTTCAAGCTTTCAGACTCCGAGATCAGAGTCAAGATCTCGCCACAGCTGCTGCTTGCCACACACCGCTTCATGGCCACAG caactataggacaatggggtagacagtcgtgtatctatttttccacccagCAGACAATCGCAAGAAAAAAGAAAGAGTCCCCCACCAGGAGAGAAGGTGGCATGATTTTTCTCTGTTCAAGCTCTCTGATTCTGGGATCAGAGTCAAAATCTCGCCACAGCTACTCCTCACTACACACCTTTTCATGGGTTCCAgtaagataaaccctatccagtactcatatcccctcatcctgcatattcaa #### Col17a1_ID10271_51 --> 2 - 1 Original Alignment gtGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAg ttttgcctcttactcatccttaggtgtactcctgtgtcttgggatgctaggtGACAGGGACCCAGCTAGGCCACAAGGCCCACCAGGGCAACCTGGTCCTAGAGGGAACAAA---GAAAAGGGGGATAAAggtttgtagtggaaatgagatggggtgcaggggcttaggttgtgaaaacta Alignment from CESAR gtGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAg ttttgcctcttactcatccttaggtgtactcctgtgtcttgggatgctaggtGACAGGGACCCAGCTAGGCCACAAGGCCCACCAGGGCAACCTGGTCCTAGAGGGAACAAA---GAAAAGGGGGATAAAggtttgtagtggaaatgagatggggtgcaggggcttaggttgtgaaaacta Alignment from Spaln_aa2Genome GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ttttgcctcttactcatccttaggtgtactcctgtgtcttgggatgctagGTGACAGGGACCCAGCTAGGCCACAAGGCCCACCAGGGCAACCTGGTCCTAGAGGGAACAAA---GAAAAGGGGGATAAAGgtttgtagtggaaatgagatggggtgcaggggcttaggttgtgaaaacta Alignment from Spaln_nt2Genome GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ttttgcctcttactcatccttaggtgtactcctgtgtcttgggatgctagGTGACAGGGACCCAGCTAGGCCACAAGGCCCACCAGGGCAACCTGGTCCTAGAGGGAACAA---AGAAAAGGGGGATAAAGgtttgtagtggaaatgagatggggtgcaggggcttaggttgtgaaaacta Alignment from Pairagon GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ttttgcctcttactcatccttaggtgtactcctgtgtcttgggatgctagGTGACAGGGACCCAGCTAGGCCACAAGGCCCACCAGGGCAACCTGGTCCTAGAGGGAACAAAGAAAAG---GGGGATAAAGgtttgtagtggaaatgagatggggtgcaggggcttaggttgtgaaaacta Alignment from Exonerate_protein2genome GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ttttgcctcttactcatccttaggtgtactcctgtgtcttgggatgctagGTGACAGGGACCCAGCTAGGCCACAAGGCCCACCAGGGCAACCTGGTCCTAGAGGGAACAAA---GAAAAGGGGGATAAAGgtttgtagtggaaatgagatggggtgcaggggcttaggttgtgaaaacta Alignment from Exonerate_coding2genome ttttgcctcttactcatccttaggtgtactcctgtgtcttgggatgctaggtgacagggacccagctaggccacaaggcccaccagggcaacctggtcctagagggaacaaagaaaagggggataaaggtttgtagtggaaatgagatggggtgcaggggcttaggttgtgaaaacta Alignment from GeneWise GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ttttgcctcttactcatccttaggtgtactcctgtgtcttgggatgctagGTGACAGGGACCCAGCTAGGCCACAAGGCCCACCAGGGCAACCTGGTCCTAGAGGGAACAAA---GAAAAGGGGGATAAAGgtttgtagtggaaatgagatggggtgcaggggcttaggttgtgaaaacta #### Col17a1_ID10281_41 --> 2 - 1 Original Alignment gtGATCCTGGTGTCCCAGGTACTCCTGGCATCTCTGGTGGTCTTTCTCATg aaaggttgccgcacttgacctgggttgaataaatatgcttttttggttaggtGACCCTGGTGTTCCAGGTACCCCTGGTATTTCGGGTGGTCTTTCTCATggttagtctccaagacaattaatagcaagtacatggggcagtataatgttc Alignment from CESAR gtGATCCTGGTGTCCCAGGTACTCCTGGCATCTCTGGTGGTCTTTCTCATg aaaggttgccgcacttgacctgggttgaataaatatgcttttttggttaggtGACCCTGGTGTTCCAGGTACCCCTGGTATTTCGGGTGGTCTTTCTCATggttagtctccaagacaattaatagcaagtacatggggcagtataatgttc Alignment from Spaln_aa2Genome GTGATCCTGGTGTCCCAGGTACTCCTGGCATCTCTGGTGGTCTTTCTCATG aaaggttgccgcacttgacctgggttgaataaatatgcttttttggttagGTGACCCTGGTGTTCCAGGTACCCCTGGTATTTCGGGTGGTCTTTCTCATGgttagtctccaagacaattaatagcaagtacatggggcagtataatgttc Alignment from Spaln_nt2Genome GTGATCCTGGTGTCCCAGGTACTCCTGGCATCTCTGGTGGTCTTTCTCATG aaaggttgccgcacttgacctgggttgaataaatatgcttttttggttagGTGACCCTGGTGTTCCAGGTACCCCTGGTATTTCGGGTGGTCTTTCTCATGgttagtctccaagacaattaatagcaagtacatggggcagtataatgttc Alignment from Pairagon GTGATCCTGGTGTCCCAGGTACTCCTGGCATCTCTGGTGGTCTTTCTCATG aaaggttgccgcacttgacctgggttgaataaatatgcttttttggttagGTGACCCTGGTGTTCCAGGTACCCCTGGTATTTCGGGTGGTCTTTCTCATGgttagtctccaagacaattaatagcaagtacatggggcagtataatgttc Alignment from Exonerate_protein2genome GTGATCCTGGTGTCCCAGGTACTCCTGGCATCTCTGGTGGTCTTTCTCATG aaaggttgccgcacttgacctgggttgaataaatatgcttttttggttagGTGACCCTGGTGTTCCAGGTACCCCTGGTATTTCGGGTGGTCTTTCTCATGgttagtctccaagacaattaatagcaagtacatggggcagtataatgttc Alignment from Exonerate_coding2genome GTGATCCTGGTGTCCCAGGTACTCCTGGCATCTCTGGTGGTCTTTCTCATG aaaggttgccgcacttgacctgggttgaataaatatgcttttttggttagGTGACCCTGGTGTTCCAGGTACCCCTGGTATTTCGGGTGGTCTTTCTCATGgttagtctccaagacaattaatagcaagtacatggggcagtataatgttc Alignment from GeneWise GTGATCCTGGTGTCCCAGGTACTCCTGGCATCTCTGGTGGTCTTTCTCATG aaaggttgccgcacttgacctgggttgaataaatatgcttttttggttagGTGACCCTGGTGTTCCAGGTACCCCTGGTATTTCGGGTGGTCTTTCTCATGgttagtctccaagacaattaatagcaagtacatggggcagtataatgttc #### Col17a1_ID10283_39 --> 2 - 1 Original Alignment ggGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAg tcccactggtgagggtgttatcacatcatgaaataatacatttaatctaggtGAGGGTGTGCCAGGTCCACCTGGGCCTCCAGGATCTTTTTTGACTGATTCTggtaagtatacccatctgctgtgccttgcaaacagtagactgaaaaatgta Alignment from CESAR ggGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAg tcccactggtgagggtgttatcacatcatgaaataatacatttaatctaggtGAGGGTGTGCCAGGTCCACCTGGGCCTCCAGGATCTTTTTTGACTGATTCTggtaagtatacccatctgctgtgccttgcaaacagtagactgaaaaatgta Alignment from Spaln_aa2Genome GGGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG tcccactggtgagggtgttatcacatcatgaaataatacatttaatctagGTGAGGGTGTGCCAGGTCCACCTGGGCCTCCAGGATCTTTTTTGACTGATTCTGgtaagtatacccatctgctgtgccttgcaaacagtagactgaaaaatgta Alignment from Spaln_nt2Genome GGGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG tcccactggtgagggtgttatcacatcatgaaataatacatttaatctagGTGAGGGTGTGCCAGGTCCACCTGGGCCTCCAGGATCTTTTTTGACTGATTCTGgtaagtatacccatctgctgtgccttgcaaacagtagactgaaaaatgta Alignment from Pairagon GGGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG tcccactggtgagggtgttatcacatcatgaaataatacatttaatctagGTGAGGGTGTGCCAGGTCCACCTGGGCCTCCAGGATCTTTTTTGACTGATTCTGgtaagtatacccatctgctgtgccttgcaaacagtagactgaaaaatgta Alignment from Exonerate_protein2genome GGGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG tcccactggtgagggtgttatcacatcatgaaataatacatttaatctagGTGAGGGTGTGCCAGGTCCACCTGGGCCTCCAGGATCTTTTTTGACTGATTCTGgtaagtatacccatctgctgtgccttgcaaacagtagactgaaaaatgta Alignment from Exonerate_coding2genome GGGAAGGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG tcccactggtgagggtgttatcacatcatgaaataatacatttaatctagGTGAGGGTGTGCCAGGTCCACCTGGGCCTCCAGGATCTTTTTTGACTGATTCTGgtaagtatacccatctgctgtgccttgcaaacagtagactgaaaaatgta Alignment from GeneWise -----GGCGTACCAGGCCCACCCGGGCCACCAGGATCCTTCCTGACTGACTCAG tcccactggtgagggtgttatcacatcatgaaataatacatttaatctagGTGAGGGTGTGCCAGGTCCACCTGGGCCTCCAGGATCTTTTTTGACTGATTCTGgtaagtatacccatctgctgtgccttgcaaacagtagactgaaaaatgta #### Col17a1_ID10285_37 --> 2 - 1 Original Alignment aaGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAg ggggctactcagtgttctttttgatttactgaccatgcctccgccctcagaaGGGGTTGGTTTACATGGCCCCCCTGGCCCCTCTGGACCACGAGGAGCACCAggtaagccctcactgcaatcttaatggggggagaagcacattaataacaaa Alignment from CESAR aaGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAg ggggctactcagtgttctttttgatttactgaccatgcctccgccctcagaaGGGGTTGGTTTACATGGCCCCCCTGGCCCCTCTGGACCACGAGGAGCACCAggtaagccctcactgcaatcttaatggggggagaagcacaaaatggtaaaa Alignment from Spaln_aa2Genome AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAG ggggctactcagtgttctttttgatttactgaccatgcctccgccctcagAAGGGGTTGGTTTACATGGCCCCCCTGGCCCCTCTGGACCACGAGGAGCACCAGgtaagccctcactgcaatcttaatggggggagaagcacattaataacaaa Alignment from Spaln_nt2Genome AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAG ggggctactcagtgttctttttgatttactgaccatgcctccgccctcagAAGGGGTTGGTTTACATGGCCCCCCTGGCCCCTCTGGACCACGAGGAGCACCAGgtaagccctcactgcaatcttaatggggggagaagcacattaataacaaa Alignment from Pairagon AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAG ggggctactcagtgttctttttgatttactgaccatgcctccgccctcagAAGGGGTTGGTTTACATGGCCCCCCTGGCCCCTCTGGACCACGAGGAGCACCAGgtaagccctcactgcaatcttaatggggggagaagcacattaataacaaa Alignment from Exonerate_protein2genome AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAGGGCCTTCCATCCCAG ggggctactcagtgttctttttgATTTACTGACCATGCCTCCGCCCTCAGAAGGGGTTGGTTTACATGGCCCCCCTGGCCCCTCTGGACCACgaggagcaccaggtaagccctcactgcaatcttaatggggggagaagcacattaataacaaa Alignment from Exonerate_coding2genome AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAG ggggctactcagtgttctttttgatttactgaccatgcctccgccctcagAAGGGGTTGGTTTACATGGCCCCCCTGGCCCCTCTGGACCACGAGGAGCACCAGgtaagccctcactgcaatcttaatggggggagaagcacattaataacaaa Alignment from GeneWise AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAG ggggctactcagtgttctttttgatttactgaccatgcctccgccctcagAAGGGGTTGGTTTACATGGCCCCCCTGGCCCCTCTGGACCACGAGGAGCACCAGgtaagccctcactgcaatcttaatggggggagaagcacattaataacaaa #### Col17a1_ID10287_35 --> 2 - 1 Original Alignment gtCCAGCTGGCCCTGCTGGTCTCCCAGGACAACAAg tctaatcacggaaaagagagaatacatacaatactgtgacttttctgcaggtCCAGCTGGCCCTGGTGGTCTACCAGGTGAACAAggtaggcatcagcctgactgaggcagtctcagtctttgaggattgaatgca Alignment from CESAR gtCCAGCTGGCCCTGCTGGTCTCCCAGGACAACAAg tctaatcacggaaaagagagaatacatacaatactgtgacttttctgcaggtCCAGCTGGCCCTGGTGGTCTACCAGGTGAACAAggtaggcatcagcctgactgaggcagtctcagtctttgaggattgaatgca Alignment from Spaln_aa2Genome GTCCAGCTGGCCCTGCTGGTCTCCCAGGACAACAAG tctaatcacggaaaagagagaatacatacaatactgtgacttttctgcagGTCCAGCTGGCCCTGGTGGTCTACCAGGTGAACAAGgtaggcatcagcctgactgaggcagtctcagtctttgaggattgaatgca Alignment from Spaln_nt2Genome GTCCAGCTGGCCCTGCTGGTCTCCCAGGACAACAAG tctaatcacggaaaagagagaatacatacaatactgtgacttttctgcagGTCCAGCTGGCCCTGGTGGTCTACCAGGTGAACAAGgtaggcatcagcctgactgaggcagtctcagtctttgaggattgaatgca Alignment from Pairagon GTCCAGCTGGCCCTGCTGGTCTCCCAGGACAACAAG tctaatcacggaaaagagagaatacatacaatactgtgacttttctgcagGTCCAGCTGGCCCTGGTGGTCTACCAGGTGAACAAGgtaggcatcagcctgactgaggcagtctcagtctttgaggattgaatgca Alignment from Exonerate_protein2genome GTCCAGCTGGCCCTGCTGGTCTCCCAGGACAACAAG tctaatcacggaaaagagagaatacatacaatactgtgacttttctgcagGTCCAGCTGGCCCTGGTGGTCTACCAGGTGAACAAGgtaggcatcagcctgactgaggcagtctcagtctttgaggattgaatgca Alignment from Exonerate_coding2genome GTCCAGCTGGCCCTGCTGGTCTCCCAGGACAACAAG tctaatcacggaaaagagagaatacatacaatactgtgacttttctgcagGTCCAGCTGGCCCTGGTGGTCTACCAGGTGAACAAGgtaggcatcagcctgactgaggcagtctcagtctttgaggattgaatgca Alignment from GeneWise GTCCAGCTGGCCCTGCTGGTCTCCCAGGACAACAAG tctaatcacggaaaagagagaatacatacaatactgtgacttttctgcagGTCCAGCTGGCCCTGGTGGTCTACCAGGTGAACAAGgtaggcatcagcctgactgaggcagtctcagtctttgaggattgaatgca #### Col17a1_ID10288_34 --> 2 - 1 Original Alignment agGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAg taggttaagatagcgtcacatggcatgtccccaccctatccaacttgcagaaGGATCCTCAACAATCACTGTGCCTGGAACTCCCGGACCTTCTGGTGCCATGGGTCCTCCTGGGCCTCCAGGGACACTGggtaagtctattctactttttcccaacaaatcaacaacgatttacataaat Alignment from CESAR agGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAg taggttaagatagcgtcacatggcatgtccccaccctatccaacttgcagaaGGATCCTCAACAATCACTGTGCCTGGAACTCCCGGACCTTCTGGTGCCATGGGTCCTCCTGGGCCTCCAGGGACACTGggtaagtctattctactttttcccaacaaatcaacaacgatttacataaat Alignment from Spaln_aa2Genome AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG taggttaagatagcgtcacatggcatgtccccaccctatccaacttgcagAAGGATCCTCAACAATCACTGTGCCTGGAACTCCCGGACCTTCTGGTGCCATGGGTCCTCCTGGGCCTCCAGGGACACTGGgtaagtctattctactttttcccaacaaatcaacaacgatttacataaat Alignment from Spaln_nt2Genome AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG taggttaagatagcgtcacatggcatgtccccaccctatccaacttgcagAAGGATCCTCAACAATCACTGTGCCTGGAACTCCCGGACCTTCTGGTGCCATGGGTCCTCCTGGGCCTCCAGGGACACTGGgtaagtctattctactttttcccaacaaatcaacaacgatttacataaat Alignment from Pairagon AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG taggttaagatagcgtcacatggcatgtccccaccctatccaacttgcagAAGGATCCTCAACAATCACTGTGCCTGGAACTCCCGGACCTTCTGGTGCCATGGGTCCTCCTGGGCCTCCAGGGACACTGGgtaagtctattctactttttcccaacaaatcaacaacgatttacataaat Alignment from Exonerate_protein2genome AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG taggttaagatagcgtcacatggcatgtccccaccctatccaacttgcagAAGGATCCTCAACAATCACTGTGCCTGGAACTCCCGGACCTTCTGGTGCCATGGGTCCTCCTGGGCCTCCAGGGACACTGGgtaagtctattctactttttcccaacaaatcaacaacgatttacataaat Alignment from Exonerate_coding2genome AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG taggttaagatagcgtcacatggcatgtccccaccctatccaacttgcagAAGGATCCTCAACAATCACTGTGCCTGGAACTCCCGGACCTTCTGGTGCCATGGGTCCTCCTGGGCCTCCAGGGACACTGGgtaagtctattctactttttcccaacaaatcaacaacgatttacataaat Alignment from GeneWise ------CCCGGCGCTCCCGGCAGAGTCATGACTTCAGAGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG taggttaagatagCGTCACATGGCATGTCCCCACCCTATCCAACTTGCAGAAGGATCCTCAACAATCACTGTGCCTGGAACTCCCGGACCTTCTGGTGCCATGGGTCCTCCTGGGCCTCCAGGGACACTGGgtaagtctattctactttttcccaacaaatcaacaacgatttacataaat #### Col17a1_ID10290_32 --> 2 - 1 Original Alignment gaCTTCCTGGTAGCCCTGGCCGACCAGGGACTAAAg taagcagggagaccttttatgatctttcactgtgtgccactttccaccaggtCTCCCAGGTAGCCCTGGCCGACCTGGGACCAAAggtgaggttccagttcctaggttgcactgttacacctaacacctttcccag Alignment from CESAR gaCTTCCTGGTAGCCCTGGCCGACCAGGGACTAAAg taagcagggagaccttttatgatctttcactgtgtgccactttccaccaggtCTCCCAGGTAGCCCTGGCCGACCTGGGACCAAAggtgaggttccagttcctaggttgcactgttacacctaacacctttcccag Alignment from Spaln_aa2Genome GACTTCCTGGTAGCCCTGGCCGACCAGGGACTAAAG taagcagggagaccttttatgatctttcactgtgtgccactttccaccagGTCTCCCAGGTAGCCCTGGCCGACCTGGGACCAAAGgtgaggttccagttcctaggttgcactgttacacctaacacctttcccag Alignment from Spaln_nt2Genome GACTTCCTGGTAGCCCTGGCCGACCAGGGACTAAAG taagcagggagaccttttatgatctttcactgtgtgccactttccaccagGTCTCCCAGGTAGCCCTGGCCGACCTGGGACCAAAGgtgaggttccagttcctaggttgcactgttacacctaacacctttcccag Alignment from Pairagon GACTTCCTGGTAGCCCTGGCCGACCAGGGACTAAAG taagcagggagaccttttatgatctttcactgtgtgccactttccaccagGTCTCCCAGGTAGCCCTGGCCGACCTGGGACCAAAGgtgaggttccagttcctaggttgcactgttacacctaacacctttcccag Alignment from Exonerate_protein2genome GACTTCCTGGTAGCCCTGGCCGACCAGGGACTAAAG taagcagggagaccttttatgatctttcactgtgtgccactttccaccagGTCTCCCAGGTAGCCCTGGCCGACCTGGGACCAAAGgtgaggttccagttcctaggttgcactgttacacctaacacctttcccag Alignment from Exonerate_coding2genome GTCTCACAGGACCCCAGGGACCTCAGGGACTTCCTGGTAGCCCTGGCCGACCAGGGACTAAAG taagcagggagaccttttatgatCTTTCACTGTGTGCCACTTTCCACCAGGTCTCCCAGGTAGCCCTGGCCGACCTGGGACCAAAGgtgaggttccagttcctaggttgcactgttacacctaacacctttcccag Alignment from GeneWise GACTTCCTGGTAGCCCTGGCCGACCAGGGACTAAAGGCGAACCCGGCGCTCCCGGCAGAGTCATGACTTCAG taagcagggagaccttttatgatctttcactgtgtgccactttccaccagGTCTCCCAGGTAGCCCTGGCCGACCTGGGACCAAAGGTGAGGTTCCAGTTCCT---------AGGTTGCACTgttacacctaacac #### Col17a1_ID10294_28 --> 2 - 1 Original Alignment ggGAGCCTGGCATTCGAGGTTTGCCTGGAGCTGTGGGTGAACCCGGAGCCAAAGGCGCAATGg cagacataccctctacactgctggttcaacttctcttttcctgttttcaggaGAACCGGGAATCCGAGGTTCGCCTGGAGCTGTGGGGGAGCCTGGGGCTAGAGGTGCAATGggtgagccaacaatctgaacacaatctgaacagaatatctcttcaggtagc Alignment from CESAR ggGAGCCTGGCATTCGAGGTTTGCCTGGAGCTGTGGGTGAACCCGGAGCCAAAGGCGCAATGg cagacataccctctacactgctggttcaacttctcttttcctgttttcaggaGAACCGGGAATCCGAGGTTCGCCTGGAGCTGTGGGGGAGCCTGGGGCTAGAGGTGCAATGggtgagccaacaatctgaacacaatctgaacagaatatctcttcaggtagc Alignment from Spaln_aa2Genome GGGAGCCTGGCATTCGAGGTTTGCCTGGAGCTGTGGGTGAACCCGGAGCCAAAGGCGCAATGG cagacataccctctacactgctggttcaacttctcttttcctgttttcagGAGAACCGGGAATCCGAGGTTCGCCTGGAGCTGTGGGGGAGCCTGGGGCTAGAGGTGCAATGGgtgagccaacaatctgaacacaatctgaacagaatatctcttcaggtagc Alignment from Spaln_nt2Genome GGGAGCCTGGCATTCGAGGTTTGCCTGGAGCTGTGGGTGAACCCGGAGCCAAAGGCGCAATGG cagacataccctctacactgctggttcaacttctcttttcctgttttcagGAGAACCGGGAATCCGAGGTTCGCCTGGAGCTGTGGGGGAGCCTGGGGCTAGAGGTGCAATGGgtgagccaacaatctgaacacaatctgaacagaatatctcttcaggtagc Alignment from Pairagon GGGAGCCTGGCATTCGAGGTTTGCCTGGAGCTGTGGGTGAACCCGGAGCCAAAGGCGCAATGG cagacataccctctacactgctggttcaacttctcttttcctgttttcagGAGAACCGGGAATCCGAGGTTCGCCTGGAGCTGTGGGGGAGCCTGGGGCTAGAGGTGCAATGGgtgagccaacaatctgaacacaatctgaacagaatatctcttcaggtagc Alignment from Exonerate_protein2genome GGGAGCCTGGCATTCGAGGTTTGCCTGGAGCTGTGGGTGAACCCGGAGCCAAAGGCGCAATGG cagacataccctctacactgctggttcaacttctcttttcctgttttcagGAGAACCGGGAATCCGAGGTTCGCCTGGAGCTGTGGGGGAGCCTGGGGCTAGAGGTGCAATGGgtgagccaacaatctgaacacaatctgaacagaatatctcttcaggtagc Alignment from Exonerate_coding2genome GGGAGCCTGGCATTCGAGGTTTGCCTGGAGCTGTGGGTGAACCCGGAGCCAAAGGCGCAATGGGTCCGGCTGGCGCTGATGGACAGCAAGGTTCCA cagacataccctctacactgctggttcaacttctcttttcctgttttcagGAGAACCGGGAATCCGAGGTTCGCCTGGAGCTGTGGGGGAGCCTGGGGCTAGAGGTGCAATGGGTGAGCCAACAATCTGAACACAATCTGAACAGAatatctcttcaggtagc Alignment from GeneWise CAAAGGTGACCAGGGTGAGAAGGGACCCAGAGGCCTC---------ACAGGGGAGCCTGGCATTCGAGGTTTGCCTGGAGCTGTGGGTGAACCCGGAGCCAAAGGCGCAATGG CAGACATACCCTCTACACTGCTGGTTCAACTTCTCTTTTCCTGTTTTCAGGAGAACCGGGAATCCGAGGTTCGCCTGGAGCTGTGGGGGAGCCTGGGGCTAGAGGTGCAATGGgtgagccaacaatctgaacacaatctgaacagaatatctcttcaggtagc #### Col17a1_ID10297_25 --> 2 - 1 Original Alignment gtGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAg tgtaatgcatgatggggatgtaggaaagctgtctgccctctttcctgcaggtGCTGTGGGAACCCAGGGACTTCGGGGTGATGTGGGACTGCCCGGTGTGAAAggtaagctagggagagaagggcaattaaatgttgaggggaggctcatttaa Alignment from CESAR gtGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAg tgtaatgcatgatggggatgtaggaaagctgtctgccctctttcctgcaggtGCTGTGGGAACCCAGGGACTTCGGGGTGATGTGGGACTGCCCGGTGTGAAAggtaagctagggagagaagggcaattaaatgttgaggggaggctcatttaa Alignment from Spaln_aa2Genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAG tgtaatgcatgatggggatgtaggaaagctgtctgccctctttcctgcagGTGCTGTGGGAACCCAGGGACTTCGGGGTGATGTGGGACTGCCCGGTGTGAAAGgtaagctagggagagaagggcaattaaatgttgaggggaggctcatttaa Alignment from Spaln_nt2Genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAG tgtaatgcatgatggggatgtaggaaagctgtctgccctctttcctgcagGTGCTGTGGGAACCCAGGGACTTCGGGGTGATGTGGGACTGCCCGGTGTGAAAGgtaagctagggagagaagggcaattaaatgttgaggggaggctcatttaa Alignment from Pairagon GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAG tgtaatgcatgatggggatgtaggaaagctgtctgccctctttcctgcagGTGCTGTGGGAACCCAGGGACTTCGGGGTGATGTGGGACTGCCCGGTGTGAAAGgtaagctagggagagaagggcaattaaatgttgaggggaggctcatttaa Alignment from Exonerate_protein2genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAG tgtaatgcatgatggggatgtaggaaagctgtctgccctctttcctgcagGTGCTGTGGGAACCCAGGGACTTCGGGGTGATGTGGGACTGCCCGGTGTGAAAGgtaagctagggagagaagggcaattaaatgttgaggggaggctcatttaa Alignment from Exonerate_coding2genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAGGTGACAAAGGACTCATGGGACCACCAGGACCCAAAGGTGACCAGGGTGAG tgtaatgcatgatggggatgtaggaaagctgtctgccctctttcctgcagGTGCTGTGGGAACCCAGGGACTTCGGGGTGATGTGGGACTGCCCGGTGTGAAAGGTAAGCTAGGGAGAGAAGGGCAATTAAATGTTGAGGGGAGGCTCATTTAA Alignment from GeneWise GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAGGTGACAAAGGACTCATGGGACCA------ tgtaatgcatgatggggatgtaggaaagctgtctgccctctttcctgcagGTGCTGTGGGAACCCAGGGACTTCGGGGTGATGTGGGACTGCCCGGTGTGAAAGGTAAGCTAGGGAGAGAAGGGCAATTAAATgttgaggggaggctcatttaa #### Col17a1_ID10302_20 --> 2 - 1 Original Alignment gaGACCGAGGCCTTCCTGGGACCCCAg gcatgtggtcacatttttgtcactacacatggctattccctctcttacaggaGACCGAAGCCTTCCTGGGACGCCAggtgagcggtctatgattatatataatataggcagctttccaccatgttgg Alignment from CESAR gaGACCGAGGCCTTCCTGGGACCCCAg gcatgtggtcacatttttgtcactacacatggctattccctctcttacaggaGACCGAAGCCTTCCTGGGACGCCAggtgagcggtctatgattatatataatataggcagctttccaccatgttgg Alignment from Spaln_aa2Genome GAGACCGAGGCCTTCCTGGGACCCCAG gcatgtggtcacatttttgtcactacacatggctattccctctcttacagGAGACCGAAGCCTTCCTGGGACGCCAGgtgagcggtctatgattatatataatataggcagctttccaccatgttgg Alignment from Spaln_nt2Genome GAGACCGAGGCCTTCCTGGGACCCCAG gcatgtggtcacatttttgtcactacacatggctattccctctcttacagGAGACCGAAGCCTTCCTGGGACGCCAGgtgagcggtctatgattatatataatataggcagctttccaccatgttgg Alignment from Pairagon GAGACCGAGGCCTTCCTGGGACCCCAG gcatgtggtcacatttttgtcactacacatggctattccctctcttacagGAGACCGAAGCCTTCCTGGGACGCCAGgtgagcggtctatgattatatataatataggcagctttccaccatgttgg Alignment from Exonerate_protein2genome GAGACCGAGGCCTTCCTGGGACCCCAG gcatgtggtcacatttttgtcactacacatggctattccctctcttacagGAGACCGAAGCCTTCCTGGGACGCCAGgtgagcggtctatgattatatataatataggcagctttccaccatgttgg Alignment from Exonerate_coding2genome GAGACCGAGGCCTTCCTGGGACCCCAG gcatgtggtcacatttttgtcactacacatggctattccctctcttacagGAGACCGAAGCCTTCCTGGGACGCCAGgtgagcggtctatgattatatataatataggcagctttccaccatgttgg Alignment from GeneWise TCTCAGAGGAAGTCCTGGTCCAAAAGGT------------GACATGGGGAGTCAAGGACCT------ gcatgtggtcacatttttgtcactacacatggctattccctctcttacaggagaccgaagCCTTCCTGGGACGCCAGGTGAGCGGTCTATGATTATATATAATATAGGCAGCTTTCCACCATGTTGG #### Col17a1_ID10307_15 --> 2 - 1 Original Alignment gaGACCTAAATACCGTGTCCACAAAGAGCAAGATGACCTCGGCAg cttcccctatgtatcacaccattgttgtgactttgtttttctcatcctaggaGACCTAAATACTGTACCAACAAAGAGTAAGATGACCTCTGCAggtatccacaaatgagagtgtgagaagttgagactaagctgtactgtgaat Alignment from CESAR gaGACCTAAATACCGTGTCCACAAAGAGCAAGATGACCTCGGCAg cttcccctatgtatcacaccattgttgtgactttgtttttctcatcctaggaGACCTAAATACTGTACCAACAAAGAGTAAGATGACCTCTGCAggtatccacaaatgagagtgtgagaagttgagactaagctgtactgtgaat Alignment from Spaln_aa2Genome GAGACCTAAATACCGTGTCCACAAAGAGCAAGATGACCTCGGCAG cttcccctatgtatcacaccattgttgtgactttgtttttctcatcctagGAGACCTAAATACTGTACCAACAAAGAGTAAGATGACCTCTGCAGgtatccacaaatgagagtgtgagaagttgagactaagctgtactgtgaat Alignment from Spaln_nt2Genome GAGACCTAAATACCGTGTCCACAAAGAGCAAGATGACCTCGGCAG cttcccctatgtatcacaccattgttgtgactttgtttttctcatcctagGAGACCTAAATACTGTACCAACAAAGAGTAAGATGACCTCTGCAGgtatccacaaatgagagtgtgagaagttgagactaagctgtactgtgaat Alignment from Pairagon GAGACCTAAATACCGTGTCCACAAAGAGCAAGATGACCTCGGCAG cttcccctatgtatcacaccattgttgtgactttgtttttctcatcctagGAGACCTAAATACTGTACCAACAAAGAGTAAGATGACCTCTGCAGgtatccacaaatgagagtgtgagaagttgagactaagctgtactgtgaat Alignment from Exonerate_protein2genome GAGACCTAAATACCGTGTCCACAAAGAGCAAGATGACCTCGGCAG cttcccctatgtatcacaccattgttgtgactttgtttttctcatcctagGAGACCTAAATACTGTACCAACAAAGAGTAAGATGACCTCTGCAGgtatccacaaatgagagtgtgagaagttgagactaagctgtactgtgaat Alignment from Exonerate_coding2genome GAGACCTAAATACCGTGTCCACAAAGAGCAAGATGACCTCGGCAG cttcccctatgtatcacaccattgttgtgactttgtttttctcatcctagGAGACCTAAATACTGTACCAACAAAGAGTAAGATGACCTCTGCAGgtatccacaaatgagagtgtgagaagttgagactaagctgtactgtgaat Alignment from GeneWise GAGACCTAAATACCGTGTCCACAAAGAGCAAGATGACCTCGGCAG cttcccctatgtatcacaccattgttgtgactttgtttttctcatcctagGAGACCTAAATACTGTACCAACAAAGAGTAAGATGACCTCTGCAGgtatccacaaatgagagtgtgagaagttgagactaagctgtactgtgaat #### Col17a1_ID10319_3 --> 2 - 1 Original Alignment aaGGGAGCACCAGCAATGGATATGCTAAGACAGGCTCTCTGGGTGGAGGAAGTCGGTTGGAGAAGCAGAGCTTGACCCATGGCAGCAGCGGCTACATCAACTCAa acaatcctttagctcagtaacaccataggtttttttctactttttggaaggaGTGAGTACA---AATGGATATGCTCAAACAGGATCATTGGGCGGTGGAAGTCGATTAGAAAAACAAAGCTTT------GGCAGTAGTGGCTATATCAACTCAagtcagacaaccacaagtcaatagggatgaactgatctgtggtagagtggg Alignment from CESAR aaGGGAGCACCAGCAATGGATATGCTAAGACAGGCTCTCTGGGTGGAGGAAGTCGGTTGGAGAAGCAGAGCTTGACCCATGGCAGCAGCGGCTACATCAACTCAa acaatcctttagctcagtaacaccataggtttttttctactttttggaaggaGTGAGTACA---AATGGATATGCTCAAACAGGATCATTGGGCGGTGGAAGTCGATTAGAAAAACAAAGCTTT------GGCAGTAGTGGCTATATCAACTCAagtcagacaaccacaagtcaatagggatgaactgatctgtggtagagtggg Alignment from Spaln_aa2Genome AAGGGAGCACCAGCAATGGATATGCTAAGACAGGCTCTCTGGGTGGAGGAAGTCGGTTGGAGAAGCAGAGCTTGACCCATGGCAGCAGCGGCTACATCAACTCAA acaatcctttagctcagtaacaccataggtttttttctactttttggaagGAGTGAGTACA---AATGGATATGCTCAAACAGGATCATTGGGCGGTGGAAGTCGATTAGAAAAACAAAGCTTT------GGCAGTAGTGGCTATATCAACTCAAgtcagacaaccacaagtcaatagggatgaactgatctgtggtagagtggg Alignment from Spaln_nt2Genome AAGGGAGCACCAGCAATGGATATGCTAAGACAGGCTCTCTGGGTGGAGGAAGTCGGTTGGAGAAGCAGAGCTTGACCCATGGCAGCAGCGGCTACATCAACTCAA acaatcctttagctcagtaacaccataggtttttttctactttttggaagGAGTGAGTAC---AAATGGATATGCTCAAACAGGATCATTGGGCGGTGGAAGTCGATTAGAAAAACAAAGCTT------TGGCAGTAGTGGCTATATCAACTCAAgtcagacaaccacaagtcaatagggatgaactgatctgtggtagagtggg Alignment from Pairagon AAGGGAGCACCAGCAATGGATATGCTAAGACAGGCTCTCTGGGTGGAGGAAGTCGGTTGGAGAAGCAGAGCTTGACCCATGGCAGCAGCGGCTACATCAACTCAA acaatcctttagctcagtaacaccataggtttttttctactttttggaagGAGTGAGTAC---AAATGGATATGCTCAAACAGGATCATTGGGCGGTGGAAGTCGATTAGAAAAACAAAGCTT------TGGCAGTAGTGGCTATATCAACTCAAgtcagacaaccacaagtcaatagggatgaactgatctgtggtagagtggg Alignment from Exonerate_protein2genome AAGGGAGCACCAGCAATGGATATGCTAAGACAGGCTCTCTGGGTGGAGGAAGTCGGTTGGAGAAGCAGAGCTTGACCCATGGCAGCAGCGGCTACATCAACTCAA acaatcctttagctcagtaacaccataggtttttttctactttttggAAGGAGTGAGTACAAATGGATATGCTCAAACAGGATCATTGGGCGGTGGAAGTCGATTAGAAAAACAAAGCTTT------GGCAGTAGTGGCTATATCAACTCAAgtcagacaaccacaagtcaatagggatgaactgatctgtggtagagtggg Alignment from Exonerate_coding2genome AAGGGAGCACCAGCAATGGATATGCTAAGACAGGCTCTCTGGGTGGAGGAAGTCGGTTGGAGAAGCAGAGCTTGACCCATGGCAGCAGCGGCTACATCAACTCAA acaatcctttagctcagtaacaccataggtttttttctactttttggAAGGAGTGAGTACAAATGGATATGCTCAAACAGGATCATTGGGCGGTGGAAGTCGATTAGAAAAACAAAGCTTT------GGCAGTAGTGGCTATATCAACTCAAgtcagacaaccacaagtcaatagggatgaactgatctgtggtagagtggg Alignment from GeneWise AAGGGAGCACCAGCAATGGATATGCTAAGACAGGCTCTCTGGGTGGAGGAAGTCGGTTGGAGAAGCAGAGCTTGACCCATGGCAGCAGCGGCTACATCAACTCAA acaatcctttagctcagtaacaccataggtttttttctactttttggaagGAGTGAGTACA---AATGGATATGCTCAAACAGGATCATTGGGCGGTGGAAGTCGATTAGAAAAACAAAGCTTT------GGCAGTAGTGGCTATATCAACTCAAgtcagacaaccacaagtcaatagggatgaactgatctgtggtagagtggg #### Coro1b_ID356_6 --> 0 - 0 Original Alignment GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG gtttagaaagaggtactgctgcatcaatcctttacatctgtattccacagGAAAACCTCGAGGAGACCATGGCTTTGCAGGAACTGGATTCAAGCAATGGGGGTCTTCTGCCGTTTTATGACCCTGACACTAGTGTGATCTATGTCTGTGGCAAGgtaagtctgtatgagtagcatacaaaaggtggatactaatgaacatttct Alignment from CESAR GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG gtttagaaagaggtactgctgcatcaatcctttacatctgtattccacagGAAAACCTCGAGGAGACCATGGCTTTGCAGGAACTGGATTCAAGCAATGGGGGTCTTCTGCCGTTTTATGACCCTGACACTAGTGTGATCTATGTCTGTGGCAAGgtaagtctgtatgagtagcatacaaaaggtggatactaatgaacatttct Alignment from Spaln_aa2Genome GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG gtttagaaagaggtactgctgcatcaatcctttacatctgtattccacagGAAAACCTCGAGGAGACCATGGCTTTGCAGGAACTGGATTCAAGCAATGGGGGTCTTCTGCCGTTTTATGACCCTGACACTAGTGTGATCTATGTCTGTGGCAAGgtaagtctgtatgagtagcatacaaaaggtggatactaatgaacatttct Alignment from Spaln_nt2Genome GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG gtttagaaagaggtactgctgcatcaatcctttacatctgtattccacagGAAAACCTCGAGGAGACCATGGCTTTGCAGGAACTGGATTCAAGCAATGGGGGTCTTCTGCCGTTTTATGACCCTGACACTAGTGTGATCTATGTCTGTGGCAAGgtaagtctgtatgagtagcatacaaaaggtggatactaatgaacatttct Alignment from Pairagon GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG gtttagaaagaggtactgctgcatcaatcctttacatctgtattccacagGAAAACCTCGAGGAGACCATGGCTTTGCAGGAACTGGATTCAAGCAATGGGGGTCTTCTGCCGTTTTATGACCCTGACACTAGTGTGATCTATGTCTGTGGCAAGgtaagtctgtatgagtagcatacaaaaggtggatactaatgaacatttct Alignment from Exonerate_protein2genome GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG gtttagaaagaggtactgctgcatcaatcctttacatctgtattccacagGAAAACCTCGAGGAGACCATGGCTTTGCAGGAACTGGATTCAAGCAATGGGGGTCTTCTGCCGTTTTATGACCCTGACACTAGTGTGATCTATGTCTGTGGCAAGgtaagtctgtatgagtagcatacaaaaggtggatactaatgaacatttct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG gtttagaaagaggtactgctgcatcaatcctttacatctgtattccacagGAAAACCTCGAGGAGACCATGGCTTTGCAGGAACTGGATTCAAGCAATGGGGGTCTTCTGCCGTTTTATGACCCTGACACTAGTGTGATCTATGTCTGTGGCAAGgtaagtctgtatgagtagcatacaaaaggtggatactaatgaacatttct #### Cpn1_ID8872_8 --> 2 - 0 Original Alignment gtGAACATGGGGATTATTTCCGGCTGCTGCTCCCGGGTACTTACTCTGTCACTGCCAAGGCACCAGGGTACGACCCCAAAACAGTGACTGTGACGGTGGGACCTGCGGGACCAACAGTG atgtctctttgtctctttgctggcaggtctggacggggtgtgtgtttcaggtGAACAAGGTGATTATTTCCGTCTTTTGCTCCCAGGTACGTATTCTGTGGCTGCCAAAGCATCAGGTTATGACCCCAAAACAGTGACTGTGAAGGTGGGACCTGCAGGGCCCACAGTGgtgagtccctgtctaaaatgcatcattgttgtgagttgatcacttgagag Alignment from CESAR gtGAACATGGGGATTATTTCCGGCTGCTGCTCCCGGGTACTTACTCTGTCACTGCCAAGGCACCAGGGTACGACCCCAAAACAGTGACTGTGACGGTGGGACCTGCGGGACCAACAGTG atgtctctttgtctctttgctggcaggtctggacggggtgtgtgtttcaggtGAACAAGGTGATTATTTCCGTCTTTTGCTCCCAGGTACGTATTCTGTGGCTGCCAAAGCATCAGGTTATGACCCCAAAACAGTGACTGTGAAGGTGGGACCTGCAGGGCCCACAGTGgtgagtccctgtctaaaatgcatcattgttgtgagttgatcacttgagag Alignment from Spaln_aa2Genome GTGAACATGGGGATTATTTCCGGCTGCTGCTCCCGGGTACTTACTCTGTCACTGCCAAGGCACCAGGGTACGACCCCAAAACAGTGACTGTGACGGTGGGACCTGCGGGACCAACAGTG atgtctctttgtctctttgctggcaggtctggacggggtgtgtgtttcagGTGAACAAGGTGATTATTTCCGTCTTTTGCTCCCAGGTACGTATTCTGTGGCTGCCAAAGCATCAGGTTATGACCCCAAAACAGTGACTGTGAAGGTGGGACCTGCAGGGCCCACAGTGgtgagtccctgtctaaaatgcatcattgttgtgagttgatcacttgagag Alignment from Spaln_nt2Genome GTGAACATGGGGATTATTTCCGGCTGCTGCTCCCGGGTACTTACTCTGTCACTGCCAAGGCACCAGGGTACGACCCCAAAACAGTGACTGTGACGGTGGGACCTGCGGGACCAACAGTG atgtctctttgtctctttgctggcaggtctggacggggtgtgtgtttcagGTGAACAAGGTGATTATTTCCGTCTTTTGCTCCCAGGTACGTATTCTGTGGCTGCCAAAGCATCAGGTTATGACCCCAAAACAGTGACTGTGAAGGTGGGACCTGCAGGGCCCACAGTGgtgagtccctgtctaaaatgcatcattgttgtgagttgatcacttgagag Alignment from Pairagon GTGAACATGGGGATTATTTCCGGCTGCTGCTCCCGGGTACTTACTCTGTCACTGCCAAGGCACCAGGGTACGACCCCAAAACAGTGACTGTGACGGTGGGACCTGCGGGACCAACAGTG atgtctctttgtctctttgctggcaggtctggacggggtgtgtgtttcagGTGAACAAGGTGATTATTTCCGTCTTTTGCTCCCAGGTACGTATTCTGTGGCTGCCAAAGCATCAGGTTATGACCCCAAAACAGTGACTGTGAAGGTGGGACCTGCAGGGCCCACAGTGgtgagtccctgtctaaaatgcatcattgttgtgagttgatcacttgagag Alignment from Exonerate_protein2genome GTGAACATGGGGATTATTTCCGGCTGCTGCTCCCGGGTACTTACTCTGTCACTGCCAAGGCACCAGGGTACGACCCCAAAACAGTGACTGTGACGGTGGGACCTGCGGGACCAACAGTG atgtctctttgtctctttgctggcaggtctggacggggtgtgtgtttcagGTGAACAAGGTGATTATTTCCGTCTTTTGCTCCCAGGTACGTATTCTGTGGCTGCCAAAGCATCAGGTTATGACCCCAAAACAGTGACTGTGAAGGTGGGACCTGCAGGGCCCACAGTGgtgagtccctgtctaaaatgcatcattgttgtgagttgatcacttgagag Alignment from Exonerate_coding2genome atgtctctttgtctctttgctggcaggtctggacggggtgtgtgtttcaggtgaacaaggtgattatttccgtcttttgctcccaggtacgtattctgtggctgccaaagcatcaggttatgaccccaaaacagtgactgtgaaggtgggacctgcagggcccacagtggtgagtccctgtctaaaatgcatcattgttgtgagttgatcacttgagag Alignment from GeneWise GTGAACATGGGGATTATTTCCGGCTGCTGCTCCCGGGTACTTACTCTGTCACTGCCAAGGCACCAGGGTACGACCCCAAAACAGTGACTGTGACGGTGGGACCTGCGGGACCAACAGTG atgtctctttgtctctttgctggcaggtctggacggggtgtgtgtttcagGTGAACAAGGTGATTATTTCCGTCTTTTGCTCCCAGGTACGTATTCTGTGGCTGCCAAAGCATCAGGTTATGACCCCAAAACAGTGACTGTGAAGGTGGGACCTGCAGGGCCCACAGTGgtgagtccctgtctaaaatgcatcattgttgtgagttgatcacttgagag #### Cpn1_ID8873_7 --> 0 - 1 Original Alignment GTCCACCAGGGCATCAAGGGAATGGTGTTGGATGAGAACTCTAACAACCTCACGGGGGCTGTCATTTCCGTCACCGGCATCAACCACGACGTCACTTCAg cgctctaattatttgtgtgaagtgttaatcacttggcgtgttttcttcagGTCCATCATGGCATTAAAGGAATGGTTTTGGACGAAAACTCCAACACTCTCACAGGGGCTGTGATCTCTGTCACTGGTATCAACCATGACATCGCTGCAggtgagattgaattagttggccataaagagcagccatatgtcaactcctga Alignment from CESAR GTCCACCAGGGCATCAAGGGAATGGTGTTGGATGAGAACTCTAACAACCTCACGGGGGCTGTCATTTCCGTCACCGGCATCAACCACGACGTCACTTCAg cgctctaattatttgtgtgaagtgttaatcacttggcgtgttttcttcagGTCCATCATGGCATTAAAGGAATGGTTTTGGACGAAAACTCCAACACTCTCACAGGGGCTGTGATCTCTGTCACTGGTATCAACCATGACATCGCTGCAggtgagattgaattagttggccataaagagcagccatatgtcaactcctga Alignment from Spaln_aa2Genome GTCCACCAGGGCATCAAGGGAATGGTGTTGGATGAGAACTCTAACAACCTCACGGGGGCTGTCATTTCCGTCACCGGCATCAACCACGACGTCACTTCAG cgctctaattatttgtgtgaagtgttaatcacttggcgtgttttcttcagGTCCATCATGGCATTAAAGGAATGGTTTTGGACGAAAACTCCAACACTCTCACAGGGGCTGTGATCTCTGTCACTGGTATCAACCATGACATCGCTGCAGgtgagattgaattagttggccataaagagcagccatatgtcaactcctga Alignment from Spaln_nt2Genome GTCCACCAGGGCATCAAGGGAATGGTGTTGGATGAGAACTCTAACAACCTCACGGGGGCTGTCATTTCCGTCACCGGCATCAACCACGACGTCACTTCAG cgctctaattatttgtgtgaagtgttaatcacttggcgtgttttcttcagGTCCATCATGGCATTAAAGGAATGGTTTTGGACGAAAACTCCAACACTCTCACAGGGGCTGTGATCTCTGTCACTGGTATCAACCATGACATCGCTGCAGgtgagattgaattagttggccataaagagcagccatatgtcaactcctga Alignment from Pairagon GTCCACCAGGGCATCAAGGGAATGGTGTTGGATGAGAACTCTAACAACCTCACGGGGGCTGTCATTTCCGTCACCGGCATCAACCACGACGTCACTTCAG cgctctaattatttgtgtgaagtgttaatcacttggcgtgttttcttcagGTCCATCATGGCATTAAAGGAATGGTTTTGGACGAAAACTCCAACACTCTCACAGGGGCTGTGATCTCTGTCACTGGTATCAACCATGACATCGCTGCAGgtgagattgaattagttggccataaagagcagccatatgtcaactcctga Alignment from Exonerate_protein2genome GTCCACCAGGGCATCAAGGGAATGGTGTTGGATGAGAACTCTAACAACCTCACGGGGGCTGTCATTTCCGTCACCGGCATCAACCACGACGTCACTTCAG cgctctaattatttgtgtgaagtgttaatcacttggcgtgttttcttcagGTCCATCATGGCATTAAAGGAATGGTTTTGGACGAAAACTCCAACACTCTCACAGGGGCTGTGATCTCTGTCACTGGTATCAACCATGACATCGCTGCAGgtgagattgaattagttggccataaagagcagccatatgtcaactcctga Alignment from Exonerate_coding2genome cgctctaattatttgtgtgaagtgttaatcacttggcgtgttttcttcaggtccatcatggcattaaaggaatggttttggacgaaaactccaacactctcacaggggctgtgatctctgtcactggtatcaaccatgacatcgctgcaggtgagattgaattagttggccataaagagcagccatatgtcaactcctga Alignment from GeneWise GTCCACCAGGGCATCAAGGGAATGGTGTTGGATGAGAACTCTAACAACCTCACGGGGGCTGTCATTTCCGTCACCGGCATCAACCACGACGTCACTTCAG cgctctaattatttgtgtgaagtgttaatcacttggcgtgttttcttcagGTCCATCATGGCATTAAAGGAATGGTTTTGGACGAAAACTCCAACACTCTCACAGGGGCTGTGATCTCTGTCACTGGTATCAACCATGACATCGCTGCAGgtgagattgaattagttggccataaagagcagccatatgtcaactcctga #### Cpn1_ID8876_4 --> 0 - 0 Original Alignment GTGGAACCAGAGACCCGGGCGGTGATCCAGTGGATTCGCTCCTTGAACTTCGTTCTCTCAGCCAATATGCACGGCGGGGCTGTGGTGGCCAATTACCCATATGACAAGTCACTTGAGCATAGGTTTCGAGGTCCCCATCGCACCTCCAATTCCCCGACACCTGATGACGAGCTCTTCCAGACG cacaatgccttcatcagaagctattatcttaagctattttattttcatagGTGGAACCAGAGACTCGGGCTTTCATTCAATGGATACGCTCTTTGAATACTGTCCTCTCATCCAATATGCATGGTGGTGCTGTGGTAGCAAATTATCCATATGATAAGTCACTTGACCGCAGGTTCCAAGGTCATCATCGCACCTCTAATTCCCCCACACCTGATGATGAACTCTTTCAAACAgtgagtaaattggtgttgcacagaagagggggtttggcctgggggttgga Alignment from CESAR GTGGAACCAGAGACCCGGGCGGTGATCCAGTGGATTCGCTCCTTGAACTTCGTTCTCTCAGCCAATATGCACGGCGGGGCTGTGGTGGCCAATTACCCATATGACAAGTCACTTGAGCATAGGTTTCGAGGTCCCCATCGCACCTCCAATTCCCCGACACCTGATGACGAGCTCTTCCAGACG cacaatgccttcatcagaagctattatcttaagctattttattttcatagGTGGAACCAGAGACTCGGGCTTTCATTCAATGGATACGCTCTTTGAATACTGTCCTCTCATCCAATATGCATGGTGGTGCTGTGGTAGCAAATTATCCATATGATAAGTCACTTGACCGCAGGTTCCAAGGTCATCATCGCACCTCTAATTCCCCCACACCTGATGATGAACTCTTTCAAACAgtgagtaaattggtgttgcacagaagagggggtttggcctgggggttgga Alignment from Spaln_aa2Genome GTGGAACCAGAGACCCGGGCGGTGATCCAGTGGATTCGCTCCTTGAACTTCGTTCTCTCAGCCAATATGCACGGCGGGGCTGTGGTGGCCAATTACCCATATGACAAGTCACTTGAGCATAGGTTTCGAGGTCCCCATCGCACCTCCAATTCCCCGACACCTGATGACGAGCTCTTCCAGACG cacaatgccttcatcagaagctattatcttaagctattttattttcatagGTGGAACCAGAGACTCGGGCTTTCATTCAATGGATACGCTCTTTGAATACTGTCCTCTCATCCAATATGCATGGTGGTGCTGTGGTAGCAAATTATCCATATGATAAGTCACTTGACCGCAGGTTCCAAGGTCATCATCGCACCTCTAATTCCCCCACACCTGATGATGAACTCTTTCAAACAgtgagtaaattggtgttgcacagaagagggggtttggcctgggggttgga Alignment from Spaln_nt2Genome GTGGAACCAGAGACCCGGGCGGTGATCCAGTGGATTCGCTCCTTGAACTTCGTTCTCTCAGCCAATATGCACGGCGGGGCTGTGGTGGCCAATTACCCATATGACAAGTCACTTGAGCATAGGTTTCGAGGTCCCCATCGCACCTCCAATTCCCCGACACCTGATGACGAGCTCTTCCAGACG cacaatgccttcatcagaagctattatcttaagctattttattttcatagGTGGAACCAGAGACTCGGGCTTTCATTCAATGGATACGCTCTTTGAATACTGTCCTCTCATCCAATATGCATGGTGGTGCTGTGGTAGCAAATTATCCATATGATAAGTCACTTGACCGCAGGTTCCAAGGTCATCATCGCACCTCTAATTCCCCCACACCTGATGATGAACTCTTTCAAACAgtgagtaaattggtgttgcacagaagagggggtttggcctgggggttgga Alignment from Pairagon GTGGAACCAGAGACCCGGGCGGTGATCCAGTGGATTCGCTCCTTGAACTTCGTTCTCTCAGCCAATATGCACGGCGGGGCTGTGGTGGCCAATTACCCATATGACAAGTCACTTGAGCATAGGTTTCGAGGTCCCCATCGCACCTCCAATTCCCCGACACCTGATGACGAGCTCTTCCAGACG cacaatgccttcatcagaagctattatcttaagctattttattttcatagGTGGAACCAGAGACTCGGGCTTTCATTCAATGGATACGCTCTTTGAATACTGTCCTCTCATCCAATATGCATGGTGGTGCTGTGGTAGCAAATTATCCATATGATAAGTCACTTGACCGCAGGTTCCAAGGTCATCATCGCACCTCTAATTCCCCCACACCTGATGATGAACTCTTTCAAACAgtgagtaaattggtgttgcacagaagagggggtttggcctgggggttgga Alignment from Exonerate_protein2genome GTGGAACCAGAGACCCGGGCGGTGATCCAGTGGATTCGCTCCTTGAACTTCGTTCTCTCAGCCAATATGCACGGCGGGGCTGTGGTGGCCAATTACCCATATGACAAGTCACTTGAGCATAGGTTTCGAGGTCCCCATCGCACCTCCAATTCCCCGACACCTGATGACGAGCTCTTCCAGACGCTGGCCAAGGTCTACTCCTACGCCCATG cacaatgccttcatcagaagctattatcttaagctattttattttcatagGTGGAACCAGAGACTCGGGCTTTCATTCAATGGATACGCTCTTTGAATACTGTCCTCTCATCCAATATGCATGGTGGTGCTGTGGTAGCAAATTATCCATATGATAAGTCACTTGACCGCAGGTTCCAAGGTCATCATCGCACCTCTAATTCCCCCACACCTGATGATGAACTCTTTCAAACAGTGAGTAAATTGGTGTTGCACAGAAGAGggggtttggcctgggggttgga Alignment from Exonerate_coding2genome GTGGAACCAGAGACCCGGGCGGTGATCCAGTGGATTCGCTCCTTGAACTTCGTTCTCTCAGCCAATATGCACGGCGGGGCTGTGGTGGCCAATTACCCATATGACAAGTCACTTGAGCATAGGTTTCGAGGTCCCCATCGCACCTCCAATTCCCCGACACCTGATGACGAGCTCTTCCAGACGCTGGCCAAGGTCTACTCCTACGCCCATG cacaatgccttcatcagaagctattatcttaagctattttattttcatagGTGGAACCAGAGACTCGGGCTTTCATTCAATGGATACGCTCTTTGAATACTGTCCTCTCATCCAATATGCATGGTGGTGCTGTGGTAGCAAATTATCCATATGATAAGTCACTTGACCGCAGGTTCCAAGGTCATCATCGCACCTCTAATTCCCCCACACCTGATGATGAACTCTTTCAAACAGTGAGTAAATTGGTGTTGCACAGAAGAGggggtttggcctgggggttgga Alignment from GeneWise GTGGAACCAGAGACCCGGGCGGTGATCCAGTGGATTCGCTCCTTGAACTTCGTTCTCTCAGCCAATATGCACGGCGGGGCTGTGGTGGCCAATTACCCATATGACAAGTCACTTGAGCATAGGTTTCGAGGTCCCCATCGCACCTCCAATTCCCCGACACCTGATGACGAGCTCTTCCAGACGCTGGCCAAGGTC cacaatgccttcatcagaagctattatcttaagctattttattttcatagGTGGAACCAGAGACTCGGGCTTTCATTCAATGGATACGCTCTTTGAATACTGTCCTCTCATCCAATATGCATGGTGGTGCTGTGGTAGCAAATTATCCATATGATAAGTCACTTGACCGCAGGTTCCAAGGTCATCATCGCACCTCTAATTCCCCCACACCTGATGATGAACTCTTTCAAACAGTGAGTAAATTGgtgttgcacagaagagggggtttggcctgggggttgga #### Cpn1_ID8877_3 --> 0 - 0 Original Alignment GGCCCAAACATGTCTGGGTATCTGGTTGGT------AGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGACAACTGGAAAAGTCAG tctggcgtgtcaatatgatgtgcaaatatgtttttatctttcccccatagGGCCCAAACATGTCTGGGTATTTGGTTGGGGTTGGTAGAAACAATGCTAATGGG---GACCTGAACCGAACCTTCCCAGATCTCAATACCTACTTTTACCACAACTCCAAAAATGGTGGTCCTAACCACCACTTACCCCTCCCAGACAATTGGAAGAGCCAAgtgagagaagatggtaatgagacacaagtggactcattattgctagttat Alignment from CESAR GGCCCAAACATGTCTGGGTATCTGGTT------GGTAGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGACAACTGGAAAAGTCAG tctggcgtgtcaatatgatgtgcaaatatgtttttatctttcccccatagGGCCCAAACATGTCTGGGTATTTGGTTGGGGTTGGTAGAAACAATGCTAATGGG---GACCTGAACCGAACCTTCCCAGATCTCAATACCTACTTTTACCACAACTCCAAAAATGGTGGTCCTAACCACCACTTACCCCTCCCAGACAATTGGAAGAGCCAAgtgagagaagatggtaatgagacacaagtggactcattattgctagttat Alignment from Spaln_aa2Genome GGCCCAAACATGTCTGGGTATCTG------GTTGGTAGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGACAACTGGAAAAGTCAG tctggcgtgtcaatatgatgtgcaaatatgtttttatctttcccccatagGGCCCAAACATGTCTGGGTATTTGGTTGGGGTTGGTAGAAACAATGCTAATGGG---GACCTGAACCGAACCTTCCCAGATCTCAATACCTACTTTTACCACAACTCCAAAAATGGTGGTCCTAACCACCACTTACCCCTCCCAGACAATTGGAAGAGCCAAgtgagagaagatggtaatgagacacaagtggactcattattgctagttat Alignment from Spaln_nt2Genome GGCCCAAACATGTCTGGGTATCTGGTTGG------TAGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGACAACTGGAAAAGTCAG tctggcgtgtcaatatgatgtgcaaatatgtttttatctttcccccatagGGCCCAAACATGTCTGGGTATTTGGTTGGGGTTGGTAGAAACAATGCTAATGG---GGACCTGAACCGAACCTTCCCAGATCTCAATACCTACTTTTACCACAACTCCAAAAATGGTGGTCCTAACCACCACTTACCCCTCCCAGACAATTGGAAGAGCCAAgtgagagaagatggtaatgagacacaagtggactcattattgctagttat Alignment from Pairagon GGCCCAAACATGTCTGGGTATCTGG------TTGGTAGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGACAACTGGAAAAGTCAG tctggcgtgtcaatatgatgtgcaaatatgtttttatctttcccccatagGGCCCAAACATGTCTGGGTATTTGGTTGGGGTTGGTAGAAACAATGCTAATGG---GGACCTGAACCGAACCTTCCCAGATCTCAATACCTACTTTTACCACAACTCCAAAAATGGTGGTCCTAACCACCACTTACCCCTCCCAGACAATTGGAAGAGCCAAgtgagagaagatggtaatgagacacaagtggactcattattgctagttat Alignment from Exonerate_protein2genome GGCCCAAACATGTCTGGGTATCTG------GTTGGTAGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGACAACTGGAAAAGTCAG tctggcgtgtcaatatgatgtgcaaatatgtttttatctttcccccatagGGCCCAAACATGTCTGGGTATTTGGTTGGGGTTGGTAGAAACAATGCTAATGGG---GACCTGAACCGAACCTTCCCAGATCTCAATACCTACTTTTACCACAACTCCAAAAATGGTGGTCCTAACCACCACTTACCCCTCCCAGACAATTGGAAGAGCCAAgtgagagaagatggtaatgagacacaagtggactcattattgctagttat Alignment from Exonerate_coding2genome GGCCCAAACATGTCTGGGTATCTG------GTTGGTAGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGACAACTGGAAAAGTCAG tctggcgtgtcaatatgatgtgcaaatatgtttttatctttcccccatagGGCCCAAACATGTCTGGGTATTTGGTTGGGGTTGGTAGAAACAATGCTAATGGG---GACCTGAACCGAACCTTCCCAGATCTCAATACCTACTTTTACCACAACTCCAAAAATGGTGGTCCTAACCACCACTTACCCCTCCCAGACAATTGGAAGAGCCAAgtgagagaagatggtaatgagacacaagtggactcattattgctagttat Alignment from GeneWise GGCCCAAACATGTCTGGGTATCTGGTTGGT------AGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGACAACTGGAAAAGTCAG tctggcgtgtcaatatgatgtgcaaatatgtttttatctttcccccatagGGCCCAAACATGTCTGGGTATTTGGTTGGGGTTGGTAGAAACAATGCTAATGGG---GACCTGAACCGAACCTTCCCAGATCTCAATACCTACTTTTACCACAACTCCAAAAATGGTGGTCCTAACCACCACTTACCCCTCCCAGACAATTGGAAGAGCCAAgtgagagaagatggtaatgagacacaagtggactcattattgctagttat #### Cpt1a_ID32_4 --> 0 - 0 Original Alignment GCTATGGTCAAGGTCTTCTCGGGTCGAAAGCCCATGTTGTACAGCTTCCAGACGTCTCTGCCGCGCCTGCCTGTCCCAGCTGTCAAAGATACCGTGAGCAGG gctgcccgaataggagaacctatgtgaaattaaaccgcatctctccctagGCTATGGTCAAGGTATTCTCAGGTCGAAAGACAATGCTGTACAGTTTCCAGACGACATTGCCACATCTACCTGTGCCAGCTGTTAAAGATGCTGTAAGTAGAgttggaatgattgccaggcttgcattgttaacaacttccatgggacttgt Alignment from CESAR GCTATGGTCAAGGTCTTCTCGGGTCGAAAGCCCATGTTGTACAGCTTCCAGACGTCTCTGCCGCGCCTGCCTGTCCCAGCTGTCAAAGATACCGTGAGCAGG gctgcccgaataggagaacctatgtgaaattaaaccgcatctctccctagGCTATGGTCAAGGTATTCTCAGGTCGAAAGACAATGCTGTACAGTTTCCAGACGACATTGCCACATCTACCTGTGCCAGCTGTTAAAGATGCTGTAAGTAGAgttggaatgattgccaggcttgcattgttaacaacttccatgggacttgt Alignment from Spaln_aa2Genome GCTATGGTCAAGGTCTTCTCGGGTCGAAAGCCCATGTTGTACAGCTTCCAGACGTCTCTGCCGCGCCTGCCTGTCCCAGCTGTCAAAGATACCGTGAGCAGG gctgcccgaataggagaacctatgtgaaattaaaccgcatctctccctagGCTATGGTCAAGGTATTCTCAGGTCGAAAGACAATGCTGTACAGTTTCCAGACGACATTGCCACATCTACCTGTGCCAGCTGTTAAAGATGCTGTAAGTAGAgttggaatgattgccaggcttgcattgttaacaacttccatgggacttgt Alignment from Spaln_nt2Genome GCTATGGTCAAGGTCTTCTCGGGTCGAAAGCCCATGTTGTACAGCTTCCAGACGTCTCTGCCGCGCCTGCCTGTCCCAGCTGTCAAAGATACCGTGAGCAGG gctgcccgaataggagaacctatgtgaaattaaaccgcatctctccctagGCTATGGTCAAGGTATTCTCAGGTCGAAAGACAATGCTGTACAGTTTCCAGACGACATTGCCACATCTACCTGTGCCAGCTGTTAAAGATGCTGTAAGTAGAgttggaatgattgccaggcttgcattgttaacaacttccatgggacttgt Alignment from Pairagon GCTATGGTCAAGGTCTTCTCGGGTCGAAAGCCCATGTTGTACAGCTTCCAGACGTCTCTGCCGCGCCTGCCTGTCCCAGCTGTCAAAGATACCGTGAGCAGG gctgcccgaataggagaacctatgtgaaattaaaccgcatctctccctagGCTATGGTCAAGGTATTCTCAGGTCGAAAGACAATGCTGTACAGTTTCCAGACGACATTGCCACATCTACCTGTGCCAGCTGTTAAAGATGCTGTAAGTAGAgttggaatgattgccaggcttgcattgttaacaacttccatgggacttgt Alignment from Exonerate_protein2genome GCTATGGTCAAGGTCTTCTCGGGTCGAAAGCCCATGTTGTACAGCTTCCAGACGTCTCTGCCGCGCCTGCCTGTCCCAGCTGTCAAAGATACCGTGAGCAGG gctgcccgaataggagaacctatgtgaaattaaaccgcatctctccctagGCTATGGTCAAGGTATTCTCAGGTCGAAAGACAATGCTGTACAGTTTCCAGACGACATTGCCACATCTACCTGTGCCAGCTGTTAAAGATGCTGTAAGTAGAgttggaatgattgccaggcttgcattgttaacaacttccatgggacttgt Alignment from Exonerate_coding2genome GCTATGGTCAAGGTCTTCTCGGGTCGAAAGCCCATGTTGTACAGCTTCCAGACGTCTCTGCCGCGCCTGCCTGTCCCAGCTGTCAAAGATACCGTGAGCAGG gctgcccgaataggagaacctatgtgaaattaaaccgcatctctccctagGCTATGGTCAAGGTATTCTCAGGTCGAAAGACAATGCTGTACAGTTTCCAGACGACATTGCCACATCTACCTGTGCCAGCTGTTAAAGATGCTGTAAGTAGAgttggaatgattgccaggcttgcattgttaacaacttccatgggacttgt Alignment from GeneWise GCTATGGTCAAGGTCTTCTCGGGTCGAAAGCCCATGTTGTACAGCTTCCAGACGTCTCTGCCGCGCCTGCCTGTCCCAGCTGTCAAAGATACCGTGAGCAGG gctgcccgaataggagaacctatgtgaaattaaaccgcatctctccctagGCTATGGTCAAGGTATTCTCAGGTCGAAAGACAATGCTGTACAGTTTCCAGACGACATTGCCACATCTACCTGTGCCAGCTGTTAAAGATGCTGTAAGTAGAgttggaatgattgccaggcttgcattgttaacaacttccatgggacttgt #### Cpt1a_ID33_5 --> 0 - 0 Original Alignment TACCTGGAGTCTGTGAGGCCACTGATGAAGGAGGGAGACTTCCAACGCATGACAGCACTGGCCCAGGATTTTGCTGTCAACCTTGGACCCAAATTGCAGTGGTATTTGAAGCTAAAATCCTGGTGGGCCACAAATTAT tagtcactaggatcaaggtgtatcactctgtgatgtttaaacttttctagTACCTGGAGTCTGTTAGGCCACTGATGAAGGAGGGAGACTTCCAATGCACTACAGCACTTGCTCAAGATTTTGCT------------CCAAAGCAGCAATGGTATTTGAAGCTTAAGTCA---TGGGCTACAAATTATgtaataaatcaccaggtgccatcaaaaatctcggttaggcacgaggattc Alignment from CESAR TACCTGGAGTCTGTGAGGCCACTGATGAAGGAGGGAGACTTCCAACGCATGACAGCACTGGCCCAGGATTTTGCTGTCAACCTTGGACCCAAATTGCAGTGGTATTTGAAGCTAAAATCCTGGTGGGCCACAAATTAT tagtcactaggatcaaggtgtatcactctgtgatgtttaaacttttctagTACCTGGAGTCTGTTAGGCCACTGATGAAGGAGGGAGACTTCCAATGCACTACAGCACTTGCTCAAGATTTTGCT------------CCAAAGCAGCAATGGTATTTGAAGCTTAAGTCATGG---GCTACAAATTATgtaataaatcaccaggtgccatcaaaaatctcggttaggcacgaggattc Alignment from Spaln_aa2Genome TACCTGGAGTCTGTGAGGCCACTGATGAAGGAGGGAGACTTCCAACGCATGACAGCACTGGCCCAGGATTTTGCTGTCAACCTTGGACCCAAATTGCAGTGGTATTTGAAGCTAAAATCCTGGTGGGCCACAAATTAT tagtcactaggatcaaggtgtatcactctgtgatgtttaaacttttctagTACCTGGAGTCTGTTAGGCCACTGATGAAGGAGGGAGACTTCCAATGCACTACAGCACTTGCTCAAGATTTTGCT------------CCAAAGCAGCAATGGTATTTGAAGCTTAAGTCA---TGGGCTACAAATTATgtaataaatcaccaggtgccatcaaaaatctcggttaggcacgaggattc Alignment from Spaln_nt2Genome TACCTGGAGTCTGTGAGGCCACTGATGAAGGAGGGAGACTTCCAACGCATGACAGCACTGGCCCAGGATTTTGCTGTCAACCTTGGACCCAAATTGCAGTGGTATTTGAAGCTAAAATCCTGGTGGGCCACAAATTAT tagtcactaggatcaaggtgtatcactctgtgatgtttaaacttttctagTACCTGGAGTCTGTTAGGCCACTGATGAAGGAGGGAGACTTCCAATGCACTACAGCACTTGCTCAAGATTTTGCT------------CCAAAGCAGCAATGGTATTTGAAGCTTAAGTC---ATGGGCTACAAATTATgtaataaatcaccaggtgccatcaaaaatctcggttaggcacgaggattc Alignment from Pairagon TACCTGGAGTCTGTGAGGCCACTGATGAAGGAGGGAGACTTCCAACGCATGACAGCACTGGCCCAGGATTTTGCTGTCAACCTTGGACCCAAATTGCAGTGGTATTTGAAGCTAAAATCCTGGTGGGCCACAAATTAT tagtcactaggatcaaggtgtatcactctgtgatgtttaaacttttctagTACCTGGAGTCTGTTAGGCCACTGATGAAGGAGGGAGACTTCCAATGCACTACAGCACTTGCTCAAGATTTTGCT------------CCAAAGCAGCAATGGTATTTGAAGCTTAAGTC---ATGGGCTACAAATTATgtaataaatcaccaggtgccatcaaaaatctcggttaggcacgaggattc Alignment from Exonerate_protein2genome TACCTGGAGTCTGTGAGGCCACTGATGAAGGAGGGAGACTTCCAACGCATGACAGCACTGGCCCAGGATTTTGCTGTCAACCTTGGACCCAAATTGCAGTGGTATTTGAAGCTAAAATCCTGGTGGGCCACAAATTAT tagtcactaggatcaaggtgtatcactctgtgatgtttaaacttttctagTACCTGGAGTCTGTTAGGCCACTGATGAAGGAGGGAGACTTCCAATGCACTACAGCACTTGCTCAAGATTTTGCT------------CCAAAGCAGCAATGGTATTTGAAGCTTAAGTCA---TGGGCTACAAATTATgtaataaatcaccaggtgccatcaaaaatctcggttaggcacgaggattc Alignment from Exonerate_coding2genome TACCTGGAGTCTGTGAGGCCACTGATGAAGGAGGGAGACTTCCAACGCATGACAGCACTGGCCCAGGATTTTGCTGTCAACCTTGGACCCAAATTGCAGTGGTATTTGAAGCTAAAATCCTGGTGGGCCACAAATTAT tagtcactaggatcaaggtgtatcactctgtgatgtttaaacttttctagTACCTGGAGTCTGTTAGGCCACTGATGAAGGAGGGAGACTTCCAATGCACTACAGCACTTGCTCAAGATTTTGCT------------CCAAAGCAGCAATGGTATTTGAAGCTTAAGTCA---TGGGCTACAAATTATgtaataaatcaccaggtgccatcaaaaatctcggttaggcacgaggattc Alignment from GeneWise TACCTGGAGTCTGTGAGGCCACTGATGAAGGAGGGAGACTTCCAACGCATGACAGCACTGGCCCAGGATTTTGCTGTCAACCTTGGACCCAAATTGCAGTGGTATTTGAAGCTAAAATCCTGGTGGGCCACAAATTAT tagtcactaggatcaaggtgtatcactctgtgatgtttaaacttttctagTACCTGGAGTCTGTTAGGCCACTGATGAAGGAGGGAGACTTCCAATGCACTACAGCACTTGCTCAAGATTTTGCT------------CCAAAGCAGCAATGGTATTTGAAGCTTAAGTCATGG---GCTACAAATTATgtaataaatcaccaggtgccatcaaaaatctcggttaggcacgaggattc #### Cpt1a_ID37_9 --> 2 - 2 Original Alignment acACCATCCAACACGTCAAGGACAGCAGGCACATTGTCGTGTACCACAGAGGCCGTTACTTCAAGGTCTGGCTCTACCATGACGGGAGGCTGCTGAGGCCCCGTGAGCTGGAGCAGCAGATGCAGCAGATCCTGGATGACACCTCAGAGCCGCAGCCCGGGGAAGCCAAGCTTGCCGCCCTCACTGCCGCAGACag tccctatgcatggcctgtgtgacactgttatgtgcttatattttgaatagacACAATAAAACATCTCAAGGACAGTAGACACATAGAGGTATACCACAGAGGCCGTTATTTCAAGGTCTGGCTTTTCCATGATGGAAGACTCCTGAGGCCCCGTGAGCTGAAGCAGCACATGCTACGGATCCTGGATGACACCTTCGAGCTCCAACCCGGGGAATCCAAACTTGCTGCTCTTACTACTACAGACaggtgagtgtacctataagtagatttacacttgattgtacactcatatgtat Alignment from CESAR acACCATCCAACACGTCAAGGACAGCAGGCACATTGTCGTGTACCACAGAGGCCGTTACTTCAAGGTCTGGCTCTACCATGACGGGAGGCTGCTGAGGCCCCGTGAGCTGGAGCAGCAGATGCAGCAGATCCTGGATGACACCTCAGAGCCGCAGCCCGGGGAAGCCAAGCTTGCCGCCCTCACTGCCGCAGACag tccctatgcatggcctgtgtgacactgttatgtgcttatattttgaatagacACAATAAAACATCTCAAGGACAGTAGACACATAGAGGTATACCACAGAGGCCGTTATTTCAAGGTCTGGCTTTTCCATGATGGAAGACTCCTGAGGCCCCGTGAGCTGAAGCAGCACATGCTACGGATCCTGGATGACACCTTCGAGCTCCAACCCGGGGAATCCAAACTTGCTGCTCTTACTACTACAGACaggtgagtgtacctataagtagatttacacttgattgtacactcatatgtat Alignment from Spaln_aa2Genome ACACCATCCAACACGTCAAGGACAGCAGGCACATTGTCGTGTACCACAGAGGCCGTTACTTCAAGGTCTGGCTCTACCATGACGGGAGGCTGCTGAGGCCCCGTGAGCTGGAGCAGCAGATGCAGCAGATCCTGGATGACACCTCAGAGCCGCAGCCCGGGGAAGCCAAGCTTGCCGCCCTCACTGCCGCAGACAG tccctatgcatggcctgtgtgacactgttatgtgcttatattttgaatagACACAATAAAACATCTCAAGGACAGTAGACACATAGAGGTATACCACAGAGGCCGTTATTTCAAGGTCTGGCTTTTCCATGATGGAAGACTCCTGAGGCCCCGTGAGCTGAAGCAGCACATGCTACGGATCCTGGATGACACCTTCGAGCTCCAACCCGGGGAATCCAAACTTGCTGCTCTTACTACTACAGACAGgtgagtgtacctataagtagatttacacttgattgtacactcatatgtat Alignment from Spaln_nt2Genome ACACCATCCAACACGTCAAGGACAGCAGGCACATTGTCGTGTACCACAGAGGCCGTTACTTCAAGGTCTGGCTCTACCATGACGGGAGGCTGCTGAGGCCCCGTGAGCTGGAGCAGCAGATGCAGCAGATCCTGGATGACACCTCAGAGCCGCAGCCCGGGGAAGCCAAGCTTGCCGCCCTCACTGCCGCAGACAG tccctatgcatggcctgtgtgacactgttatgtgcttatattttgaatagACACAATAAAACATCTCAAGGACAGTAGACACATAGAGGTATACCACAGAGGCCGTTATTTCAAGGTCTGGCTTTTCCATGATGGAAGACTCCTGAGGCCCCGTGAGCTGAAGCAGCACATGCTACGGATCCTGGATGACACCTTCGAGCTCCAACCCGGGGAATCCAAACTTGCTGCTCTTACTACTACAGACAGgtgagtgtacctataagtagatttacacttgattgtacactcatatgtat Alignment from Pairagon ACACCATCCAACACGTCAAGGACAGCAGGCACATTGTCGTGTACCACAGAGGCCGTTACTTCAAGGTCTGGCTCTACCATGACGGGAGGCTGCTGAGGCCCCGTGAGCTGGAGCAGCAGATGCAGCAGATCCTGGATGACACCTCAGAGCCGCAGCCCGGGGAAGCCAAGCTTGCCGCCCTCACTGCCGCAGACAG tccctatgcatggcctgtgtgacactgttatgtgcttatattttgaatagACACAATAAAACATCTCAAGGACAGTAGACACATAGAGGTATACCACAGAGGCCGTTATTTCAAGGTCTGGCTTTTCCATGATGGAAGACTCCTGAGGCCCCGTGAGCTGAAGCAGCACATGCTACGGATCCTGGATGACACCTTCGAGCTCCAACCCGGGGAATCCAAACTTGCTGCTCTTACTACTACAGACAGgtgagtgtacctataagtagatttacacttgattgtacactcatatgtat Alignment from Exonerate_protein2genome ACACCATCCAACACGTCAAGGACAGCAGGCACATTGTCGTGTACCACAGAGGCCGTTACTTCAAGGTCTGGCTCTACCATGACGGGAGGCTGCTGAGGCCCCGTGAGCTGGAGCAGCAGATGCAGCAGATCCTGGATGACACCTCAGAGCCGCAGCCCGGGGAAGCCAAGCTTGCCGCCCTCACTGCCGCAGACAG tccctatgcatggcctgtgtgacactgttatgtgcttatattttgaatagACACAATAAAACATCTCAAGGACAGTAGACACATAGAGGTATACCACAGAGGCCGTTATTTCAAGGTCTGGCTTTTCCATGATGGAAGACTCCTGAGGCCCCGTGAGCTGAAGCAGCACATGCTACGGATCCTGGATGACACCTTCGAGCTCCAACCCGGGGAATCCAAACTTGCTGCTCTTACTACTACAGACAGgtgagtgtacctataagtagatttacacttgattgtacactcatatgtat Alignment from Exonerate_coding2genome ACACCATCCAACACGTCAAGGACAGCAGGCACATTGTCGTGTACCACAGAGGCCGTTACTTCAAGGTCTGGCTCTACCATGACGGGAGGCTGCTGAGGCCCCGTGAGCTGGAGCAGCAGATGCAGCAGATCCTGGATGACACCTCAGAGCCGCAGCCCGGGGAAGCCAAGCTTGCCGCCCTCACTGCCGCAGACAG tccctatgcatggcctgtgtgacactgttatgtgcttatattttgaatagACACAATAAAACATCTCAAGGACAGTAGACACATAGAGGTATACCACAGAGGCCGTTATTTCAAGGTCTGGCTTTTCCATGATGGAAGACTCCTGAGGCCCCGTGAGCTGAAGCAGCACATGCTACGGATCCTGGATGACACCTTCGAGCTCCAACCCGGGGAATCCAAACTTGCTGCTCTTACTACTACAGACAGgtgagtgtacctataagtagatttacacttgattgtacactcatatgtat Alignment from GeneWise ACACCATCCAACACGTCAAGGACAGCAGGCACATTGTCGTGTACCACAGAGGCCGTTACTTCAAGGTCTGGCTCTACCATGACGGGAGGCTGCTGAGGCCCCGTGAGCTGGAGCAGCAGATGCAGCAGATCCTGGATGACACCTCAGAGCCGCAGCCCGGGGAAGCCAAGCTTGCCGCCCTCACTGCCGCAGACAG tccctatgcatggcctgtgtgacactgttatgtgcttatattttgaatagACACAATAAAACATCTCAAGGACAGTAGACACATAGAGGTATACCACAGAGGCCGTTATTTCAAGGTCTGGCTTTTCCATGATGGAAGACTCCTGAGGCCCCGTGAGCTGAAGCAGCACATGCTACGGATCCTGGATGACACCTTCGAGCTCCAACCCGGGGAATCCAAACTTGCTGCTCTTACTACTACAGACAGgtgagtgtacctataagtagatttacacttgattgtacactcatatgtat #### Cpt1a_ID40_12 --> 0 - 0 Original Alignment TATGTCATGGCCACCGACGTCTTCCAGCTGGGCTACTCAGAGGATGGACACTGTAAAGGAGACAAGAACCCCAACATCCCCAAACCCACCAGGCTACAGTGGGACATTCCAGGAGAA cacatggttttcactccaaaacaccaccacatctcctttcattgggacagTTCGTCATGGCAACAGACATATCCCAACTGGGATACTCTGAAGATGGATATTGTAAAGGAGACAAGAACCCCAACATCCCCAAACCTACCAGGCTACAGTGGGATATTCCAGGGGAAgtgagttcctcctcatgtacgacctgctagctgtgcatccctactccagt Alignment from CESAR TATGTCATGGCCACCGACGTCTTCCAGCTGGGCTACTCAGAGGATGGACACTGTAAAGGAGACAAGAACCCCAACATCCCCAAACCCACCAGGCTACAGTGGGACATTCCAGGAGAA cacatggttttcactccaaaacaccaccacatctcctttcattgggacagTTCGTCATGGCAACAGACATATCCCAACTGGGATACTCTGAAGATGGATATTGTAAAGGAGACAAGAACCCCAACATCCCCAAACCTACCAGGCTACAGTGGGATATTCCAGGGGAAgtgagttcctcctcatgtacgacctgctagctgtgcatccctactccagt Alignment from Spaln_aa2Genome TATGTCATGGCCACCGACGTCTTCCAGCTGGGCTACTCAGAGGATGGACACTGTAAAGGAGACAAGAACCCCAACATCCCCAAACCCACCAGGCTACAGTGGGACATTCCAGGAGAA cacatggttttcactccaaaacaccaccacatctcctttcattgggacagTTCGTCATGGCAACAGACATATCCCAACTGGGATACTCTGAAGATGGATATTGTAAAGGAGACAAGAACCCCAACATCCCCAAACCTACCAGGCTACAGTGGGATATTCCAGGGGAAgtgagttcctcctcatgtacgacctgctagctgtgcatccctactccagt Alignment from Spaln_nt2Genome TATGTCATGGCCACCGACGTCTTCCAGCTGGGCTACTCAGAGGATGGACACTGTAAAGGAGACAAGAACCCCAACATCCCCAAACCCACCAGGCTACAGTGGGACATTCCAGGAGAA cacatggttttcactccaaaacaccaccacatctcctttcattgggacagTTCGTCATGGCAACAGACATATCCCAACTGGGATACTCTGAAGATGGATATTGTAAAGGAGACAAGAACCCCAACATCCCCAAACCTACCAGGCTACAGTGGGATATTCCAGGGGAAgtgagttcctcctcatgtacgacctgctagctgtgcatccctactccagt Alignment from Pairagon TATGTCATGGCCACCGACGTCTTCCAGCTGGGCTACTCAGAGGATGGACACTGTAAAGGAGACAAGAACCCCAACATCCCCAAACCCACCAGGCTACAGTGGGACATTCCAGGAGAA cacatggttttcactccaaaacaccaccacatctcctttcattgggacagTTCGTCATGGCAACAGACATATCCCAACTGGGATACTCTGAAGATGGATATTGTAAAGGAGACAAGAACCCCAACATCCCCAAACCTACCAGGCTACAGTGGGATATTCCAGGGGAAgtgagttcctcctcatgtacgacctgctagctgtgcatccctactccagt Alignment from Exonerate_protein2genome TATGTCATGGCCACCGACGTCTTCCAGCTGGGCTACTCAGAGGATGGACACTGTAAAGGAGACAAGAACCCCAACATCCCCAAACCCACCAGGCTACAGTGGGACATTCCAGGAGAA cacatggttttcactccaaaacaccaccacatctcctttcattgggacagTTCGTCATGGCAACAGACATATCCCAACTGGGATACTCTGAAGATGGATATTGTAAAGGAGACAAGAACCCCAACATCCCCAAACCTACCAGGCTACAGTGGGATATTCCAGGGGAAgtgagttcctcctcatgtacgacctgctagctgtgcatccctactccagt Alignment from Exonerate_coding2genome TATGTCATGGCCACCGACGTCTTCCAGCTGGGCTACTCAGAGGATGGACACTGTAAAGGAGACAAGAACCCCAACATCCCCAAACCCACCAGGCTACAGTGGGACATTCCAGGAGAA cacatggttttcactccaaaacaccaccacatctcctttcattgggacagTTCGTCATGGCAACAGACATATCCCAACTGGGATACTCTGAAGATGGATATTGTAAAGGAGACAAGAACCCCAACATCCCCAAACCTACCAGGCTACAGTGGGATATTCCAGGGGAAgtgagttcctcctcatgtacgacctgctagctgtgcatccctactccagt Alignment from GeneWise TATGTCATGGCCACCGACGTCTTCCAGCTGGGCTACTCAGAGGATGGACACTGTAAAGGAGACAAGAACCCCAACATCCCCAAACCCACCAGGCTACAGTGGGACATTCCAGGAGAA cacatggttttcactccaaaacaccaccacatctcctttcattgggacagTTCGTCATGGCAACAGACATATCCCAACTGGGATACTCTGAAGATGGATATTGTAAAGGAGACAAGAACCCCAACATCCCCAAACCTACCAGGCTACAGTGGGATATTCCAGGGGAAgtgagttcctcctcatgtacgacctgctagctgtgcatccctactccagt #### Crtac1_ID8463_9 --> 1 - 1 Original Alignment tGTCATCCGCAGGGAGCACGGGGACCCTCTCATCGAGGAGCTCAATCCTGGTGACGCCCTAGAGCCTGAGGGCCGGGGTACAg agctgtttgaaatacccaaggaataacttgctcatgtgtgtcccttctagtGTCATCCACAAAGACCATGGGGACCCTCTGATTGAGGAGCTCAATCCAGGTGATGCCCTAAAGCCTGAGGGTTGGGGTAAGggtgcgagacttgaaggtggttggactagacctttcttcagaagatgatag Alignment from CESAR tGTCATCCGCAGGGAGCACGGGGACCCTCTCATCGAGGAGCTCAATCCTGGTGACGCCCTAGAGCCTGAGGGCCGGGGTACAg agctgtttgaaatacccaaggaataacttgctcatgtgtgtcccttctagtGTCATCCACAAAGACCATGGGGACCCTCTGATTGAGGAGCTCAATCCAGGTGATGCCCTAAAGCCTGAGGGTTGGGGTAAGggtgcgagacttgaaggtggttggactagacctttcttcagaagatgatag Alignment from Spaln_aa2Genome TGTCATCCGCAGGGAGCACGGGGACCCTCTCATCGAGGAGCTCAATCCTGGTGACGCCCTAGAGCCTGAGGGCCGGGGTACAG agctgtttgaaatacccaaggaataacttgctcatgtgtgtcccttctagTGTCATCCACAAAGACCATGGGGACCCTCTGATTGAGGAGCTCAATCCAGGTGATGCCCTAAAGCCTGAGGGTTGGGGTAAGGgtgcgagacttgaaggtggttggactagacctttcttcagaagatgatag Alignment from Spaln_nt2Genome TGTCATCCGCAGGGAGCACGGGGACCCTCTCATCGAGGAGCTCAATCCTGGTGACGCCCTAGAGCCTGAGGGCCGGGGTACAG agctgtttgaaatacccaaggaataacttgctcatgtgtgtcccttctagTGTCATCCACAAAGACCATGGGGACCCTCTGATTGAGGAGCTCAATCCAGGTGATGCCCTAAAGCCTGAGGGTTGGGGTAAGGgtgcgagacttgaaggtggttggactagacctttcttcagaagatgatag Alignment from Pairagon TGTCATCCGCAGGGAGCACGGGGACCCTCTCATCGAGGAGCTCAATCCTGGTGACGCCCTAGAGCCTGAGGGCCGGGGTACAG agctgtttgaaatacccaaggaataacttgctcatgtgtgtcccttctagTGTCATCCACAAAGACCATGGGGACCCTCTGATTGAGGAGCTCAATCCAGGTGATGCCCTAAAGCCTGAGGGTTGGGGTAAGGgtgcgagacttgaaggtggttggactagacctttcttcagaagatgatag Alignment from Exonerate_protein2genome TGTCATCCGCAGGGAGCACGGGGACCCTCTCATCGAGGAGCTCAATCCTGGTGACGCCCTAGAGCCTGAGGGCCGGGGTACAG agctgtttgaaatacccaaggaataacttgctcatgtgtgtcccttctagTGTCATCCACAAAGACCATGGGGACCCTCTGATTGAGGAGCTCAATCCAGGTGATGCCCTAAAGCCTGAGGGTTGGGGTAAGGgtgcgagacttgaaggtggttggactagacctttcttcagaagatgatag Alignment from Exonerate_coding2genome TGTCATCCGCAGGGAGCACGGGGACCCTCTCATCGAGGAGCTCAATCCTGGTGACGCCCTAGAGCCTGAGGGCCGGGGTACAG agctgtttgaaatacccaaggaataacttgctcatgtgtgtcccttctagTGTCATCCACAAAGACCATGGGGACCCTCTGATTGAGGAGCTCAATCCAGGTGATGCCCTAAAGCCTGAGGGTTGGGGTAAGGgtgcgagacttgaaggtggttggactagacctttcttcagaagatgatag Alignment from GeneWise TGTCATCCGCAGGGAGCACGGGGACCCTCTCATCGAGGAGCTCAATCCTGGTGACGCCCTAGAGCCTGAGGGCCGGGGTACAG agctgtttgaaatacccaaggaataacttgctcatgtgtgtcccttctagTGTCATCCACAAAGACCATGGGGACCCTCTGATTGAGGAGCTCAATCCAGGTGATGCCCTAAAGCCTGAGGGTTGGGGTAAGGgtgcgagacttgaaggtggttggactagacctttcttcagaagatgatag #### Crtac1_ID8467_7 --> 2 - 0 Original Alignment gcGTAGACGACCCTCATCAGCATGGCCGAGGTGTGGCCCTGGCAGATTTCAACCGTGACGGCAAAGTAGACATCGTCTATGGCAACTGGAACGGCCCACATCGCCTCTATCTACAGATGAGTGCTCACGGGAAGGTCCGGTTTCGG tgggtatttttctgtgtccccatgtacatagagcctctctcctgcttcaggtGTGGATGATCCTTATCAGCATGGGCAAGATGTATCTCTGGCAGGTTTCAACCGTGATGGGAGGCTGGATGCTGTA------AACTGGAATGGCCCACATTGCCTCTATTTACAGATGAGCACT------CAGGTCCGGTTTCGGgtaagggtagcaaggccctgcacaatgttgggatgggtaattacagatgc Alignment from CESAR gcGTAGACGACCCTCATCAGCATGGCCGAGGTGTGGCCCTGGCAGATTTCAACCGTGACGGCAAAGTAGACATCGTCTATGGCAACTGGAACGGCCCACATCGCCTCTATCTACAGATGAGTGCTCACGGGAAGGTCCGGTTTCGG tgggtatttttctgtgtccccatgtacatagagcctctctcctgcttcaggtGTGGATGATCCTTATCAGCATGGGCAAGATGTATCTCTGGCAGGTTTCAACCGTGATGGGAGGCTGGATGCTGTA------AACTGGAATGGCCCACATTGCCTCTATTTACAGATGAGCACTCAG------GTCCGGTTTCGGgtaagggtagcaaggccctgcacaatgttgggatgggtaattacagatgc Alignment from Spaln_aa2Genome GCGTAGACGACCCTCATCAGCATGGCCGAGGTGTGGCCCTGGCAGATTTCAACCGTGACGGCAAAGTAGACATCGTCTATGGCAACTGGAACGGCCCACATCGCCTCTATCTACAGATGAGTGCTCACGGGAAGGTCCGGTTTCGG tgggtatttttctgtgtccccatgtacatagagcctctctcctgcttcagGTGTGGATGATCCTTATCAGCATGGGCAAGATGTATCTCTGGCAGGTTTCAACCGTGATGGGAGGCTGGATGCTGTA------AACTGGAATGGCCCACATTGCCTCTATTTACAGATGAGCACTCAGGTCCGGTTTCGGGTAAGGgtagcaaggccctgcacaatgttgggatgggtaattacagatgc Alignment from Spaln_nt2Genome GCGTAGACGACCCTCATCAGCATGGCCGAGGTGTGGCCCTGGCAGATTTCAACCGTGACGGCAAAGTAGACATCGTCTATGGCAACTGGAACGGCCCACATCGCCTCTATCTACAGATGAGTGCTCACGGGAAGGTCCGGTTTCGG tgggtatttttctgtgtccccatgtacatagagcctctctcctgcttcagGTGTGGATGATCCTTATCAGCATGGGCAAGATGTATCTCTGGCAGGTTTCAACCGTGATGGGAGGCTGG--ATGCTGTA----AACTGGAATGGCCCACATTGCCTCTATTTACAGATGAGCACTC------AGGTCCGGTTTCGGgtaagggtagcaaggccctgcacaatgttgggatgggtaattacagatgc Alignment from Pairagon GCGTAGACGACCCTCATCAGCATGGCCGAGGTGTGGCCCTGGCAGATTTCAACCGTGACGGCAAAGTAGACATCGTCTATGGC-----------AACTGGAACGGCCCACATCGCCTCTATCTACAGATGAGTGCTCACGGGAAGGTCCGGTTTCGG tgggtatttttctgtgtccccatgtacatagagcctctctcctgcttcagGTGTGGATGATCCTTATCAGCATGGGCAAGATGTATCTCTGGCAGGTTTCAACCGTGATGGGA-----------------GGCTGGATGCTGTAAACTGGAATGGCCCACATTGCCTCTATTTACAGATGAGCACTC------AGGTCCGGTTTCGGgtaagggtagcaaggccctgcacaatgttgggatgggtaattacagatgc Alignment from Exonerate_protein2genome ATACTGCGGCCAGTGCC---GGCGTAGACGACCCTCATCAGCATGGCCGAGGTGTGGCCCTGGCAGATTTCAACCGTGACGGCAAAGTAGACATCGTCTATGGCAACTGGAACGGCCCACATCGCCTCTATCTACAGATGAGTGCTCACGGGAAGGTCCGGTTTCGG tgggtatttttctgtgtccccatgtacatAGAGCCTCTCTCCTGCTTCAGGTGTGGATGATCCTTATCAGCATGGGCAAGATGTATCTCTGGCAGGTTTCAACCGTGATGGGAGGCTGGATGCTGTA------AACTGGAATGGCCCACATTGCCTCTATTTACAGATGAGCACTCAGGTCCGGTTTCGGGTAAGGgtagcaaggccctgcacaatgttgggatgggtaattacagatgc Alignment from Exonerate_coding2genome ATACTGCGGCCAGTGCC---GGCGTAGACGACCCTCATCAGCATGGCCGAGGTGTGGCCCTGGCAGATTTCAACCGTGACGGCAAAGTAGACATCGTCTATGGCAACTGGAACGGCCCACATCGCCTCTATCTACAGATGAGTGCTCACGGGAAGGTCCGGTTTCGG tgggtatttttctgtgtccccatgtacatAGAGCCTCTCTCCTGCTTCAGGTGTGGATGATCCTTATCAGCATGGGCAAGATGTATCTCTGGCAGGTTTCAACCGTGATGGGAGGCTGGATGCTGTA------AACTGGAATGGCCCACATTGCCTCTATTTACAGATGAGCACTCAGGTCCGGTTTCGGGTAAGGgtagcaaggccctgcacaatgttgggatgggtaattacagatgc Alignment from GeneWise GCGTAGACGACCCTCATCAGCATGGCCGAGGTGTGGCCCTGGCAGATTTCAACCGTGACGGCAAAGTAGACATCGTCTATGGCAACTGGAACGGCCCACATCGCCTCTATCTACAGATGAGTGCTCACGGGAAGGTCCGGTTTCGG tgggtatttttctgtgtccccatgtacatagagcctctctcctgcttcagGTGTGGATGATCCTTATCAGCATGGGCAAGATGTATCTCTGGCAGGTTTCAACCGTGATGGGAGGCTGGATGCTGTA------AACTGGAATGGCCCACATTGCCTCTATTTACAGATGAGCACT------CAGGTCCGGTTTCGGgtaagggtagcaaggccctgcacaatgttgggatgggtaattacagatgc #### Crtac1_ID8477_5 --> 0 - 1 Original Alignment GGCTCTGGAAGATACTCTATCTACATAGCCAACTATGCCTATGGTGATGTGGGGCCTGATGCCCTCATCGAAATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTGGCACTCAGGGACGTGGCGGCTGAGGCTGGGGTCAGCAAGTACACAg agcaacaaaggagactgttgagtgggtgagaactcttgtctctttttcagGGCTCAGGTAGATACTCTATTTACCTATCCAACTATGCATATGGAGAG---GGGCCAGATGCCCTA------ATGGACCCGGAACCCAGTGATCTCTCACGGGGGGTCCTAGCACTAAGGGATGTCGCAGCTGAGTCTGGGGTTAGCAAATACACCtgtaagttagaactgttcttgctcttcaatattcaggaagacaaagaatgt Alignment from CESAR GGCTCTGGAAGATACTCTATCTACATAGCCAACTATGCCTATGGTGATGTGGGGCCTGATGCCCTCATCGAAATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTGGCACTCAGGGACGTGGCGGCTGAGGCTGGGGTCAGCAAGTACACAg agcaacaaaggagactgttgagtgggtgagaactcttgtctctttttcagGGCTCAGGTAGATACTCTATTTACCTATCCAACTATGCATATGGAGAG---GGGCCAGATGCCCTA------ATGGACCCGGAACCCAGTGATCTCTCACGGGGGGTCCTAGCACTAAGGGATGTCGCAGCTGAGTCTGGGGTTAGCAAATACACCtgtaagttagaactgttcttgctcttcaatattcaggaagacaaagaatgt Alignment from Spaln_aa2Genome GGCTCTGGAAGATACTCTATCTACATAGCCAACTATGCCTATGGTGATGTGGGGCCTGATGCCCTCATCGAAATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTGGCACTCAGGGACGTGGCGGCTGAGGCTGGGGTCAGCAAGTACACAG agcaacaaaggagactgttgagtgggtgagaactcttgtctctttttcagGGCTCAGGTAGATACTCTATTTACCTATCCAACTATGCATATGGAGAG---GGGCCAGATGCCCTA------ATGGACCCGGAACCCAGTGATCTCTCACGGGGGGTCCTAGCACTAAGGGATGTCGCAGCTGAGTCTGGGGTTAGCAAATACACCTgtaagttagaactgttcttgctcttcaatattcaggaagacaaagaatgt Alignment from Spaln_nt2Genome GGCTCTGGAAGATACTCTATCTACATAGCCAACTATGCCTATGGTGATGTGGGGCCTGATGCCCTCATCGAAATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTGGCACTCAGGGACGTGGCGGCTGAGGCTGGGGTCAGCAAGTACACAG agcaacaaaggagactgttgagtgggtgagaactcttgtctctttttcagGGCTCAGGTAGATACTCTATTTACCTATCCAACTATGCATATGGAGA---GGGGCCAGATGCCCT------AATGGACCCGGAACCCAGTGATCTCTCACGGGGGGTCCTAGCACTAAGGGATGTCGCAGCTGAGTCTGGGGTTAGCAAATACACCTgtaagttagaactgttcttgctcttcaatattcaggaagacaaagaatgt Alignment from Pairagon GGCTCTGGAAGATACTCTATCTACATAGCCAACTATGCCTATGGTGATGTGGGGCCTGATGCCCTCATCGAAATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTGGCACTCAGGGACGTGGCGGCTGAGGCTGGGGTCAGCAAGTACACAG agcaacaaaggagactgttgagtgggtgagaactcttgtctctttttcagGGCTCAGGTAGATACTCTATTTACCTATCCAACTATGCATATGGAGA---GGGGCCAGATGCCCT------AATGGACCCGGAACCCAGTGATCTCTCACGGGGGGTCCTAGCACTAAGGGATGTCGCAGCTGAGTCTGGGGTTAGCAAATACACCTgtaagttagaactgttcttgctcttcaatattcaggaagacaaagaatgt Alignment from Exonerate_protein2genome GGCTCTGGAAGATACTCTATCTACATAGCCAACTATGCCTATGGTGATGTGGGGCCTGATGCCCTCATCGAAATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTGGCACTCAGGGACGTGGCGGCTGAGGCTGGGGTCAGCAAGTACACAG agcaacaaaggagactgttgagtgggtgagaactcttgtctctttttcagGGCTCAGGTAGATACTCTATTTACCTATCCAACTATGCATATGGAGAG---GGGCCAGATGCCCTA------ATGGACCCGGAACCCAGTGATCTCTCACGGGGGGTCCTAGCACTAAGGGATGTCGCAGCTGAGTCTGGGGTTAGCAAATACACCTgtaagttagaactgttcttgctcttcaatattcaggaagacaaagaatgt Alignment from Exonerate_coding2genome GGCTCTGGAAGATACTCTATCTACATAGCCAACTATGCCTATGGTGATGTGGGGCCTGATGCCCTCATCGAAATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTGGCACTCAGGGACGTGGCGGCTGAGGCTGGGGTCAGCAAGTACACAG agcaacaaaggagactgttgagtgggtgagaactcttgtctctttttcagGGCTCAGGTAGATACTCTATTTACCTATCCAACTATGCATATGGAGAG---GGGCCAGATGCCCTA------ATGGACCCGGAACCCAGTGATCTCTCACGGGGGGTCCTAGCACTAAGGGATGTCGCAGCTGAGTCTGGGGTTAGCAAATACACCTgtaagttagaactgttcttgctcttcaatattcaggaagacaaagaatgt Alignment from GeneWise GGCTCTGGAAGATACTCTATCTACATAGCCAACTATGCCTATGGTGATGTGGGGCCTGATGCCCTCATCGAAATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTGGCACTCAGGGACGTGGCGGCTGAGGCTGGGGTCAGCAAGTACACAG agcaacaaaggagactgttgagtgggtgagaactcttgtctctttttcagGGCTCAGGTAGATACTCTATTTACCTATCCAACTATGCATATGGAGAG---GGGCCAGATGCCCTA------ATGGACCCGGAACCCAGTGATCTCTCACGGGGGGTCCTAGCACTAAGGGATGTCGCAGCTGAGTCTGGGGTTAGCAAATACACCTgtaagttagaactgttcttgctcttcaatattcaggaagacaaagaatgt #### Csf2ra_ID13432_8 --> 0 - 1 Original Alignment GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCg ggttcacaaagataagttcttactcccacgccttcttcttccctcctcagGTCCTGGTTGTTGAGGAGACCCGCCTCACCTTCCCTAGTCCTGCTCCCCATGGATGGCACAGGGTCAAAGTCCGAGCAGGTGACACTAGGATGAAGCACTGGGGAAAATGG------GCGCAGCCTCTTggtgtgccagctgtaatgcttgattcccccaaaaatatgcctgctgtccaa Alignment from CESAR GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCg ggttcacaaagataagttcttactcccacgccttcttcttccctcctcagGTCCTGGTTGTTGAGGAGACCCGCCTCACCTTCCCTAGTCCTGCTCCCCATGGATGGCACAGGGTCAAAGTCCGAGCAGGTGACACTAGGATGAAGCACTGGGGAAAATGG------GCGCAGCCTCTTggtgtgccagctgtaatgcttgattcccccaaaaatatgcctgctgtccaa Alignment from Spaln_aa2Genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG ggttcacaaagataagttcttactcccacgccttcttcttccctcctcagGTCCTGGTTGTTGAGGAGACCCGCCTCACCTTCCCTAGTCCTGCTCCCCATGGATGGCACAGGGTCAAAGTCCGAGCAGGTGACACTAGGATGAAGCACTGGGGAAAATGG------GCGCAGCCTCTTGgtgtgccagctgtaatgcttgattcccccaaaaatatgcctgctgtccaa Alignment from Spaln_nt2Genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG ggttcacaaagataagttcttactcccacgccttcttcttccctcctcagGTCCTGGTTGTTGAGGAGACCCGCCTCACCTTCCCTAGTCCTGCTCCCCATGGATGGCACAGGGTCAAAGTCCGAGCAGGTGACACTAGGATGAAGCACTGGGGAAAATGG------GCGCAGCCTCTTGgtgtgccagctgtaatgcttgattcccccaaaaatatgcctgctgtccaa Alignment from Pairagon GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG ggttcacaaagataagttcttactcccacgccttcttcttccctcctcagGTCCTGGTTGTTGAGGAGACCCGCCTCACCTTCCCTAGTCCTGCTCCCCATGGATGGCACAGGGTCAAAGTCCGAGCAGGTGACACTAGGATGAAGCACTGGGGAAAATGG------GCGCAGCCTCTTGgtgtgccagctgtaatgcttgattcccccaaaaatatgcctgctgtccaa Alignment from Exonerate_protein2genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG ggttcacaaagataagttcttactcccacgccttcttcttccctcctcagGTCCTGGTTGTTGAGGAGACCCGCCTCACCTTCCCTAGTCCTGCTCCCCATGGATGGCACAGGGTCAAAGTCCGAGCAGGTGACACTAGGATGAAGCACTGGGGAAAATGG------GCGCAGCCTCTTGgtgtgccagctgtaatgcttgattcccccaaaaatatgcctgctgtccaa Alignment from Exonerate_coding2genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGT ggttcacaaagataagttcttactcccacgccttcttcttccctcctcagGTCCTGGTTGTTGAGGAGACCCGCCTCACCTTCCCTAGTCCTGCTCCCCATGGATGGCACAGGGTCAAAGTCCGAGCAGGTGACACTAGGATGAAGCACTGGGGAAAATGGGCGcagcctcttggtgtgccagctgtaatgcttgattcccccaaaaatatgcctgctgtccaa Alignment from GeneWise ----AGCGCAGAGCCAGGAAGCACACCCCGGAAGGTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG ggttcacaaagataagTTCTTACTCCCACGCCTTCTTCTTCCCTCCTCAGGTCCTGGTTGTTGAGGAGACCCGCCTCACCTTCCCTAGTCCTGCTCCCCATGGATGGCACAGGGTCAAAGTCCGAGCAGGTGACACTAGGATGAAGCACTGGGGAAAATGG------GCGCAGCCTCTTGgtgtgccagctgtaatgcttgattcccccaaaaatatgcctgctgtccaa #### Csf2ra_ID13434_6 --> 2 - 0 Original Alignment agCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG tacaatgtagagccttcacatgtttagtccacccttaattttccttgtagagCGTCTTGGTCCTCCATGTGATGTCACAGCAGCCTGCAACTCTTCCCATTGCACTGTGTCTTGGGCTCCACCTTCCACTTGGGCATCCCTGGCAGCACGGGACTATCAGTTTGAGGTCCAGTGGCAGgtgtcagaaggcctcttttttctgggaaagcctaggggatgctatgccca Alignment from CESAR agCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG tacaatgtagagccttcacatgtttagtccacccttaattttccttgtagagCGTCTTGGTCCTCCATGTGATGTCACAGCAGCCTGCAACTCTTCCCATTGCACTGTGTCTTGGGCTCCACCTTCCACTTGGGCATCCCTGGCAGCACGGGACTATCAGTTTGAGGTCCAGTGGCAGgtgtcagaaggcctcttttttctgggaaagcctaggggatgctatgccca Alignment from Spaln_aa2Genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG tacaatgtagagccttcacatgtttagtccacccttaattttccttgtagAGCGTCTTGGTCCTCCATGTGATGTCACAGCAGCCTGCAACTCTTCCCATTGCACTGTGTCTTGGGCTCCACCTTCCACTTGGGCATCCCTGGCAGCACGGGACTATCAGTTTGAGGTCCAGTGGCAGgtgtcagaaggcctcttttttctgggaaagcctaggggatgctatgccca Alignment from Spaln_nt2Genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG tacaatgtagagccttcacatgtttagtccacccttaattttccttgtagAGCGTCTTGGTCCTCCATGTGATGTCACAGCAGCCTGCAACTCTTCCCATTGCACTGTGTCTTGGGCTCCACCTTCCACTTGGGCATCCCTGGCAGCACGGGACTATCAGTTTGAGGTCCAGTGGCAGgtgtcagaaggcctcttttttctgggaaagcctaggggatgctatgccca Alignment from Pairagon AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG tacaatgtagagccttcacatgtttagtccacccttaattttccttgtagAGCGTCTTGGTCCTCCATGTGATGTCACAGCAGCCTGCAACTCTTCCCATTGCACTGTGTCTTGGGCTCCACCTTCCACTTGGGCATCCCTGGCAGCACGGGACTATCAGTTTGAGGTCCAGTGGCAGgtgtcagaaggcctcttttttctgggaaagcctaggggatgctatgccca Alignment from Exonerate_protein2genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG tacaatgtagagccttcacatgtttagtccacccttaattttccttgtagAGCGTCTTGGTCCTCCATGTGATGTCACAGCAGCCTGCAACTCTTCCCATTGCACTGTGTCTTGGGCTCCACCTTCCACTTGGGCATCCCTGGCAGCACGGGACTATCAGTTTGAGGTCCAGTGGCAGgtgtcagaaggcctcttttttctgggaaagcctaggggatgctatgccca Alignment from Exonerate_coding2genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG tacaatgtagagccttcacatgtttagtccacccttaattttccttgtagAGCGTCTTGGTCCTCCATGTGATGTCACAGCAGCCTGCAACTCTTCCCATTGCACTGTGTCTTGGGCTCCACCTTCCACTTGGGCATCCCTGGCAGCACGGGACTATCAGTTTGAGGTCCAGTGGCAGgtgtcagaaggcctcttttttctgggaaagcctaggggatgctatgccca Alignment from GeneWise AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG-- tacaatgtagagccttcacatgtttagtccacccttaattttccttgtagAGCGTCTTGGTCCTCCATGTGATGTCACAGCAGCCTGCAACTCTTCCCATTGCACTGTGTCTTGGGCTCCACCTTCCACTTGGGCATCCCTGGCAGCACGGGACTATCAGTTTGAGGTCCAGTGGCAGGTgtcagaaggcctcttttttctgggaaagcctaggggatgctatgccca #### Csf2ra_ID13438_2 --> 2 - 0 Original Alignment ctCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG aggtcctccaccactcactaccaagacacatcttcactctgtatccacagccCCAACCACTCCGTATGTTGGCTCTGCTCTCAACCTGATCTTTGACCCTTGGACCCGCATGCTGACCTGGGCTTGTGATACTGCTGCAGACAATGTCATGGTGATGTCATGCACTGTAACTGTTACATCATGGGAAGCATCAATACACCGGCGAGTGTCAgtaagtaggtaagatttgagcctatgcctaataatgccatgaggcccaat Alignment from CESAR ctCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGCACCGTGACC------TCGCGGGAGGCGGGGATACACCGGCGAGTCTCG aggtcctccaccactcactaccaagacacatcttcactctgtatccacagccCCAACCACTCCGTATGTTGGCTCTGCTCTCAACCTGATCTTTGACCCTTGGACCCGCATGCTGACCTGGGCTTGTGATACTGCTGCAGACAATGTCATGGTGATGTCATGCACTGTAACTGTTACATCATGGGAAGCATCAATACACCGGCGAGTGTCAgtaagtaggtaagatttgagcctatgcctaataatgccatgaggcccaat Alignment from Spaln_aa2Genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG aggtcctccaccactcactaccaagacacatcttcactctgtatccacagCCCCAACCACTCCGTATGTTGGCTCTGCTCTCAACCTGATCTTTGACCCTTGGACCCGCATGCTGACCTGGGCTTGTGATACTGCTGCAGACAATGTCATGGTGATGTCATGCACTGTAACTGTTACATCATGGGAAGCATCAATACACCGGCGAGTGTCAgtaagtaggtaagatttgagcctatgcctaataatgccatgaggcccaat Alignment from Spaln_nt2Genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGCACCGTGACC------TCGCGGGAGGCGGGGATACACCGGCGAGTCTCG aggtcctccaccactcactaccaagacacatcttcactctgtatccacagCCCCAACCACTCCGTATGTTGGCTCTGCTCTCAACCTGATCTTTGACCCTTGGACCCGCATGCTGACCTGGGCTTGTGATACTGCTGCAGACAATGTCATGGTGATGTCATGCACTGTAACTGTTACATCATGGGAAGCATCAATACACCGGCGAGTGTCAgtaagtaggtaagatttgagcctatgcctaataatgccatgaggcccaat Alignment from Pairagon CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGCACCGTGACC------TCGCGGGAGGCGGGGATACACCGGCGAGTCTCG aggtcctccaccactcactaccaagacacatcttcactctgtatccacagCCCCAACCACTCCGTATGTTGGCTCTGCTCTCAACCTGATCTTTGACCCTTGGACCCGCATGCTGACCTGGGCTTGTGATACTGCTGCAGACAATGTCATGGTGATGTCATGCACTGTAACTGTTACATCATGGGAAGCATCAATACACCGGCGAGTGTCAgtaagtaggtaagatttgagcctatgcctaataatgccatgaggcccaat Alignment from Exonerate_protein2genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG aggtcctccaccactcactaccaagacacatcttcactctgtatccacagCCCCAACCACTCCGTATGTTGGCTCTGCTCTCAACCTGATCTTTGACCCTTGGACCCGCATGCTGACCTGGGCTTGTGATACTGCTGCAGACAATGTCATGGTGATGTCATGCACTGTAACTGTTACATCATGGGAAGCATCAATACACCGGCGAGTGTCAgtaagtaggtaagatttgagcctatgcctaataatgccatgaggcccaat Alignment from Exonerate_coding2genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG aggtcctccaccactcactaccaagacacatcttcactctgtatccacagCCCCAACCACTCCGTATGTTGGCTCTGCTCTCAACCTGATCTTTGACCCTTGGACCCGCATGCTGACCTGGGCTTGTGATACTGCTGCAGACAATGTCATGGTGATGTCATGCACTGTAACTGTTACATCATGGGAAGCATCAATACACCGGCGAGTGTCAgtaagtaggtaagatttgagcctatgcctaataatgccatgaggcccaat Alignment from GeneWise CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGCACCGTGACC------TCGCGGGAGGCGGGGATACACCGGCGAGTCTCG aggtcctccaccactcactaccaagacacatcttcactctgtatccacagCCCCAACCACTCCGTATGTTGGCTCTGCTCTCAACCTGATCTTTGACCCTTGGACCCGCATGCTGACCTGGGCTTGTGATACTGCTGCAGACAATGTCATGGTGATGTCATGCACTGTAACTGTTACATCATGGGAAGCATCAATACACCGGCGAGTGTCAgtaagtaggtaagatttgagcctatgcctaataatgccatgaggcccaat #### Ctsf_ID684_12 --> 0 - 1 Original Alignment TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACc agcaataatcctgcttttgcagctgtcatgacattctgatttgattgtagTTCTACCACCATGGAATTGCTCACACATCCCAGCCAATCTGCAGCCCTTGGCTGATTGACCATGCAGTGGTGCTTGTAGGCCATAGTAACcgtaagttgtgttatctgcctcatgctacagtctgcagctcaacaacaatc Alignment from CESAR TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACc agcaataatcctgcttttgcagctgtcatgacattctgatttgattgtagTTCTACCACCATGGAATTGCTCACACATCCCAGCCAATCTGCAGCCCTTGGCTGATTGACCATGCAGTGGTGCTTGTAGGCCATAGTAACcgtaagttgtgttatctgcctcatgctacagtctgcagctcaacaacaatc Alignment from Spaln_aa2Genome TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC agcaataatcctgcttttgcagctgtcatgacattctgatttgattgtagTTCTACCACCATGGAATTGCTCACACATCCCAGCCAATCTGCAGCCCTTGGCTGATTGACCATGCAGTGGTGCTTGTAGGCCATAGTAACCgtaagttgtgttatctgcctcatgctacagtctgcagctcaacaacaatc Alignment from Spaln_nt2Genome TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC agcaataatcctgcttttgcagctgtcatgacattctgatttgattgtagTTCTACCACCATGGAATTGCTCACACATCCCAGCCAATCTGCAGCCCTTGGCTGATTGACCATGCAGTGGTGCTTGTAGGCCATAGTAACCgtaagttgtgttatctgcctcatgctacagtctgcagctcaacaacaatc Alignment from Pairagon TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC agcaataatcctgcttttgcagctgtcatgacattctgatttgattgtagTTCTACCACCATGGAATTGCTCACACATCCCAGCCAATCTGCAGCCCTTGGCTGATTGACCATGCAGTGGTGCTTGTAGGCCATAGTAACCgtaagttgtgttatctgcctcatgctacagtctgcagctcaacaacaatc Alignment from Exonerate_protein2genome TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC agcaataatcctgcttttgcagctgtcatgacattctgatttgattgtagTTCTACCACCATGGAATTGCTCACACATCCCAGCCAATCTGCAGCCCTTGGCTGATTGACCATGCAGTGGTGCTTGTAGGCCATAGTAACCgtaagttgtgttatctgcctcatgctacagtctgcagctcaacaacaatc Alignment from Exonerate_coding2genome TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC agcaataatcctgcttttgcagctgtcatgacattctgatttgattgtagTTCTACCACCATGGAATTGCTCACACATCCCAGCCAATCTGCAGCCCTTGGCTGATTGACCATGCAGTGGTGCTTGTAGGCCATAGTAACCgtaagttgtgttatctgcctcatgctacagtctgcagctcaacaacaatc Alignment from GeneWise TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC agcaataatcctgcttttgcagctgtcatgacattctgatttgattgtagTTCTACCACCATGGAATTGCTCACACATCCCAGCCAATCTGCAGCCCTTGGCTGATTGACCATGCAGTGGTGCTTGTAGGCCATAGTAACCgtaagttgtgttatctgcctcatgctacagtctgcagctcaacaacaatc #### Ctsw_ID1019_7 --> 2 - 1 Original Alignment gtGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGg tgtgcgcttggcatggaagtttcttgctaatattcttgttgcttttccaggtGGTCTGGCCACTGAAAAGGAATTTCCATTCCAGAGGGAAAGAAAGCCTCACAGATGCCTGGCTAAAAAGTATAAGGAAGTGGCATGGATTCCA------GCCACATTGTCTAATAATGAGCAGggtacaaccagggtaagatgggtgagctcatgtgacctgcatggcaatcaa Alignment from CESAR gtGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGg tgtgcgcttggcatggaagtttcttgctaatattcttgttgcttttccaggtGGTCTGGCCACTGAAAAGGAATTTCCATTCCAGAGGGAAAGAAAGCCTCACAGATGCCTGGCTAAAAAGTATAAGGAAGTGGCATGGATTCCA------GCCACATTGTCTAATAATGAGCAGggtacaaccagggtaagatgggtgagctcatgtgacctgcatggcaatcaa Alignment from Spaln_aa2Genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG tgtgcgcttggcatggaagtttcttgctaatattcttgttgcttttccagGTGGTCTGGCCACTGAAAAGGAATTTCCATTCCAGAGGGAAAGAAAGCCTCACAGATGCCTGGCTAAAAAGTATAAGGAAGTGGCATGGATTCCA------GCCACATTGTCTAATAATGAGCAGGgtacaaccagggtaagatgggtgagctcatgtgacctgcatggcaatcaa Alignment from Spaln_nt2Genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG tgtgcgcttggcatggaagtttcttgctaatattcttgttgcttttccagGTGGTCTGGCCACTGAAAAGGAATTTCCATTCCAGAGGGAAAGAAAGCCTCACAGATGCCTGGCTAAAAAGTATAAGGAAGTGGCATGGATTCCAG------CCACATTGTCTAATAATGAGCAGGgtacaaccagggtaagatgggtgagctcatgtgacctgcatggcaatcaa Alignment from Pairagon GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGA-TCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG tgtgcgcttggcatggaagtttcttgctaatattcttgttgcttttccagGTGGTCTGGCCACTGAAAAGGAATTTCCATTCCAGAGGGAAAGAAAGCCTCACAGATGCCTGGCTAAAAAGTATAAGGAAGTGGCATGGATTCCAG-------CCACATTGTCTAATAATGAGCAGGgtacaaccagggtaagatgggtgagctcatgtgacctgcatggcaatcaa Alignment from Exonerate_protein2genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG tgtgcgcttggcatggaagtttcttgctaatattcttgttgcttttccagGTGGTCTGGCCACTGAAAAGGAATTTCCATTCCAGAGGGAAAGAAAGCCTCACAGATGCCTGGCTAAAAAGTATAAGGAAGTGGCATGGATTCCA------GCCACATTGTCTAATAATGAGCAGGgtacaaccagggtaagatgggtgagctcatgtgacctgcatggcaatcaa Alignment from Exonerate_coding2genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG tgtgcgcttggcatggaagtttcttgctaatattcttgttgcttttccagGTGGTCTGGCCACTGAAAAGGAATTTCCATTCCAGAGGGAAAGAAAGCCTCACAGATGCCTGGCTAAAAAGTATAAGGAAGTGGCATGGATTCCA------GCCACATTGTCTAATAATGAGCAGGgtacaaccagggtaagatgggtgagctcatgtgacctgcatggcaatcaa Alignment from GeneWise GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG tgtgcgcttggcatggaagtttcttgctaatattcttgttgcttttccagGTGGTCTGGCCACTGAAAAGGAATTTCCATTCCAGAGGGAAAGAAAGCCTCACAGATGCCTGGCTAAAAAGTATAAGGAAGTGGCATGGATTCCA------GCCACATTGTCTAATAATGAGCAGGgtacaaccagggtaagatgggtgagctcatgtgacctgcatggcaatcaa #### Cwf19l1_ID8934_10 --> 2 - 0 Original Alignment ctCAGCCTCCAGGCCCTTGTTGGTTTTGCCTCGCCAGCCCTGAAGTGGAAAAGCACCTGGTGGTCAACATTGGCACACAT aaggtgaggcataagaacttgacaatgctttctcatccctgctgctttagcaCAGCCTCCAGGCCCTTGTTGGTTTTGTCTTGCCAGCCCCGAAGTGGAAAAGCACCTGGTGGTCAACATTGGCACACATgtgagtagcttcctttaattgggccatcaaagaatataaccctaagattg Alignment from CESAR ctCAGCCTCCAGGCCCTTGTTGGTTTTGCCTCGCCAGCCCTGAAGTGGAAAAGCACCTGGTGGTCAACATTGGCACACAT aaggtgaggcataagaacttgacaatgctttctcatccctgctgctttagcaCAGCCTCCAGGCCCTTGTTGGTTTTGTCTTGCCAGCCCCGAAGTGGAAAAGCACCTGGTGGTCAACATTGGCACACATgtgagtagcttcctttaattgggccatcaaagaatataaccctaagattg Alignment from Spaln_aa2Genome CTCAGCCTCCAGGCCCTTGTTGGTTTTGCCTCGCCAGCCCTGAAGTGGAAAAGCACCTGGTGGTCAACATTGGCACACAT aaggtgaggcataagaacttgacaatgctttctcatccctgctgctttagCACAGCCTCCAGGCCCTTGTTGGTTTTGTCTTGCCAGCCCCGAAGTGGAAAAGCACCTGGTGGTCAACATTGGCACACATgtgagtagcttcctttaattgggccatcaaagaatataaccctaagattg Alignment from Spaln_nt2Genome CTCAGCCTCCAGGCCCTTGTTGGTTTTGCCTCGCCAGCCCTGAAGTGGAAAAGCACCTGGTGGTCAACATTGGCACACAT aaggtgaggcataagaacttgacaatgctttctcatccctgctgctttagCACAGCCTCCAGGCCCTTGTTGGTTTTGTCTTGCCAGCCCCGAAGTGGAAAAGCACCTGGTGGTCAACATTGGCACACATgtgagtagcttcctttaattgggccatcaaagaatataaccctaagattg Alignment from Pairagon CTCAGCCTCCAGGCCCTTGTTGGTTTTGCCTCGCCAGCCCTGAAGTGGAAAAGCACCTGGTGGTCAACATTGGCACACAT aaggtgaggcataagaacttgacaatgctttctcatccctgctgctttagCACAGCCTCCAGGCCCTTGTTGGTTTTGTCTTGCCAGCCCCGAAGTGGAAAAGCACCTGGTGGTCAACATTGGCACACATgtgagtagcttcctttaattgggccatcaaagaatataaccctaagattg Alignment from Exonerate_protein2genome CTCAGCCTCCAGGCCCTTGTTGGTTTTGCCTCGCCAGCCCTGAAGTGGAAAAGCACCTGGTGGTCAACATTGGCACACAT aaggtgaggcataagaacttgacaatgctttctcatccctgctgctttagCACAGCCTCCAGGCCCTTGTTGGTTTTGTCTTGCCAGCCCCGAAGTGGAAAAGCACCTGGTGGTCAACATTGGCACACATgtgagtagcttcctttaattgggccatcaaagaatataaccctaagattg Alignment from Exonerate_coding2genome CTCAGCCTCCAGGCCCTTGTTGGTTTTGCCTCGCCAGCCCTGAAGTGGAAAAGCACCTGGTGGTCAACATTGGCACACAT aaggtgaggcataagaacttgacaatgctttctcatccctgctgctttagCACAGCCTCCAGGCCCTTGTTGGTTTTGTCTTGCCAGCCCCGAAGTGGAAAAGCACCTGGTGGTCAACATTGGCACACATgtgagtagcttcctttaattgggccatcaaagaatataaccctaagattg Alignment from GeneWise CTCAGCCTCCAGGCCCTTGTTGGTTTTGCCTCGCCAGCCCTGAAGTGGAAAAGCACCTGGTGGTCAACATTGGCACACAT aaggtgaggcataagaacttgacaatgctttctcatccctgctgctttagCACAGCCTCCAGGCCCTTGTTGGTTTTGTCTTGCCAGCCCCGAAGTGGAAAAGCACCTGGTGGTCAACATTGGCACACATgtgagtagcttcctttaattgggccatcaaagaatataaccctaagattg #### Cwf19l1_ID8942_2 --> 1 - 0 Original Alignment cTTGGCCTGTGGAGATGTTGAAGGAAAGTTTGATGTTTTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAACTTTGAT ctccatacacatctcgttaagtgacaaaaactaccttctatcttcctcagcTTGGCCTGTGGAGCTGTTGAAGGAAAGTTTGATGTATTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAATTTTGATgtaagggtacttagctttaaactgggctcaatcataagtaatttcctata Alignment from CESAR cTTGGCCTGTGGAGATGTTGAAGGAAAGTTTGATGTTTTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAACTTTGAT ctccatacacatctcgttaagtgacaaaaactaccttctatcttcctcagcTTGGCCTGTGGAGCTGTTGAAGGAAAGTTTGATGTATTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAATTTTGATgtaagggtacttagctttaaactgggctcaatcataagtaatttcctata Alignment from Spaln_aa2Genome CTTGGCCTGTGGAGATGTTGAAGGAAAGTTTGATGTTTTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAACTTTGAT ctccatacacatctcgttaagtgacaaaaactaccttctatcttcctcagCTTGGCCTGTGGAGCTGTTGAAGGAAAGTTTGATGTATTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAATTTTGATgtaagggtacttagctttaaactgggctcaatcataagtaatttcctata Alignment from Spaln_nt2Genome CTTGGCCTGTGGAGATGTTGAAGGAAAGTTTGATGTTTTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAACTTTGAT ctccatacacatctcgttaagtgacaaaaactaccttctatcttcctcagCTTGGCCTGTGGAGCTGTTGAAGGAAAGTTTGATGTATTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAATTTTGATgtaagggtacttagctttaaactgggctcaatcataagtaatttcctata Alignment from Pairagon CTTGGCCTGTGGAGATGTTGAAGGAAAGTTTGATGTTTTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAACTTTGAT ctccatacacatctcgttaagtgacaaaaactaccttctatcttcctcagCTTGGCCTGTGGAGCTGTTGAAGGAAAGTTTGATGTATTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAATTTTGATgtaagggtacttagctttaaactgggctcaatcataagtaatttcctata Alignment from Exonerate_protein2genome TTGGCCTGTGGAGATGTTGAAGGAAAGTTTGATGTTTTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAACTTTGAT ctccatacacatctcgttaagtgacaaaaactaccttctatcttcctcagcTTGGCCTGTGGAGCTGTTGAAGGAAAGTTTGATGTATTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAATTTTGATgtaagggtacttagctttaaactgggctcaatcataagtaatttcctata Alignment from Exonerate_coding2genome TTGGCCTGTGGAGATGTTGAAGGAAAGTTTGATGTTTTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAACTTTGAT ctccatacacatctcgttaagtgacaaaaactaccttctatcttcctcagcTTGGCCTGTGGAGCTGTTGAAGGAAAGTTTGATGTATTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAATTTTGATgtaagggtacttagctttaaactgggctcaatcataagtaatttcctata Alignment from GeneWise GCTCAGAAGCCACTGCGTCTCTTGGCCTGTGGAGATGTTGAAGGAAAGTTTGATGTTTTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAACTTTGAT ctccatacacatctcgttaagtgacaaaaaCTACCTTCTATCTTCCTCAGCTTGGCCTGTGGAGCTGTTGAAGGAAAGTTTGATGTATTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAATTTTGATgtaagggtacttagctttaaactgggctcaatcataagtaatttcctata #### Cyp26a1_ID7415_3 --> 0 - 0 Original Alignment GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC tcgagcacaaatataggccaataaacagtttctcctcacttttctcccagGTTATAATGCAGGCATTCAGCAGGGAAGCACTCCAGTGTTATGTCCCTGTTATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGTCAGCAAGGCTCAGCAGGAAGTGGGGAGGATGAACAGCAGCTAGTGGAGTCGTTTGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTCTGTACCGTgtattacatctgtggttgtactgccttccagGGTGTT---ACTCGTAATA Alignment from CESAR GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC tcgagcacaaatataggccaataaacagtttctcctcacttttctcccagGTTATAATGCAGGCATTCAGCAGGGAAGCACTCCAGTGTTATGTCCCTGTTATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGTCAGCAAGGCTCAGCAGGAAGTGGGGAGGATGAACAGCAGCTAGTGGAGTCGTTTGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTCTGTACCGTgtattacataaaggatgatgtcttcttctagGGTGTT---ACTCGTAATA Alignment from Spaln_aa2Genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC tcgagcacaaatataggccaataaacagtttctcctcacttttctcccagGTTATAATGCAGGCATTCAGCAGGGAAGCACTCCAGTGTTATGTCCCTGTTATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGTCAGCAAGGCTCAGCAGGAAGTGGGGAGGATGAACAGCAGCTAGTGGAGTCGTTTGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTCTGTACCGTgtattacatctgtggttgtactgccttccagGGTGTT---ACTCGTAATA Alignment from Spaln_nt2Genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG-------------------------------GGCGTGAAGGCGCGGAACC tcgagcacaaatataggccaataaacagtttctcctcacttttctcccagGTTATAATGCAGGCATTCAGCAGGGAAGCACTCCAGTGTTATGTCCCTGTTATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGTCAGCAAGGCTCAGCAGGAAGTGGGGAGGATGAACAGCAGCTAGTGGAGTCGTTTGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTCTGTACCGTGTATTACATCTGTGGTTGTACTGCCTTCCAGGGTGTTA---CTCGTAATA Alignment from Pairagon GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGGGGCGTGAAGGCGCGGAACCTT-------------------------------------------------A tcgagcacaaatataggccaataaacagtttctcctcacttttctcccagGTTATAATGCAGGCATTCAGCAGGGAAGCACTCCAGTGTTATGTCCCTGTTATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGTCAGCAAGGCTCAGCAGGAAGTGGGGAGGATGAACAGCAGCTAGTGGAGTCGTTTGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTCTGTACCG---------------------TGTATTACATCTGTGGTTGTACTGCCTTCCAGGGTGTTACTCGTAATATAA Alignment from Exonerate_protein2genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC tcgagcacaaatataggccaataaacagtttctcctcacttttctcccagGTTATAATGCAGGCATTCAGCAGGGAAGCACTCCAGTGTTATGTCCCTGTTATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGTCAGCAAGGCTCAGCAGGAAGTGGGGAGGATGAACAGCAGCTAGTGGAGTCGTTTGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTCTGTACCGTgtattacatctgtggttgtactgccttccagGGTGTT---ACTCGTAATA Alignment from Exonerate_coding2genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC tcgagcacaaatataggccaataaacagtttctcctcacttttctcccagGTTATAATGCAGGCATTCAGCAGGGAAGCACTCCAGTGTTATGTCCCTGTTATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGTCAGCAAGGCTCAGCAGGAAGTGGGGAGGATGAACAGCAGCTAGTGGAGTCGTTTGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTCTGTACCGTgtattacatctgtggttgtactgccttccagGGTGTT---ACTCGTAATA Alignment from GeneWise GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC tcgagcacaaatataggccaataaacagtttctcctcacttttctcccagGTTATAATGCAGGCATTCAGCAGGGAAGCACTCCAGTGTTATGTCCCTGTTATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGTCAGCAAGGCTCAGCAGGAAGTGGGGAGGATGAACAGCAGCTAGTGGAGTCGTTTGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTCTGTACCGTgtattacatctgtggttgtactgccttccagGGTGTT---ACTCGTAATA #### Cyp2c29_ID7760_3 --> 2 - 1 Original Alignment gcGTTGTTTTTAGCAATGGAAACAGATGGAAAGAGATG---AGACGATTTACACTCATGACCCTGCGAAATTTGGGCATGGGGAAAAGGAACATTGAGGACCGTGTTCAAGAGGAAGCACAGTGTCTTGTGGAAGAACTGAGGAAAACCAAAg tatgttgttggtctcaccatctctatttttgtatatttttctcttttaaggcATTGTTTTTACCAATGGAAACAAATGGAAGAGGATGATGAGACAATTCACACTCATGACCTTACGAAATTTGGGAATGGGTAAACGTAACATAGTAGAACATGTTCAAGAGGAAGCACAATGTCTTGCAGAAGAATTAAGGAAAACTAATggtaggaaccaattggcacagttgcaagatggtttagtgggggaacacagg Alignment from CESAR gcGTTGTTTTTAGCAATGGAAACAGATGGAAAGAG---ATGAGACGATTTACACTCATGACCCTGCGAAATTTGGGCATGGGGAAAAGGAACATTGAGGACCGTGTTCAAGAGGAAGCACAGTGTCTTGTGGAAGAACTGAGGAAAACCAAAg tatgttgttggtctcaccatctctatttttgtatatttttctcttttaaggcATTGTTTTTACCAATGGAAACAAATGGAAGAGGATGATGAGACAATTCACACTCATGACCTTACGAAATTTGGGAATGGGTAAACGTAACATAGTAGAACATGTTCAAGAGGAAGCACAATGTCTTGCAGAAGAATTAAGGAAAACTAATggtaggaaccaattggcacagttgcaagatggtttagtgggggaacacagg Alignment from Spaln_aa2Genome GCGTTGTTTTTAGCAATGGAAACAGATGGAAAGAG---ATGAGACGATTTACACTCATGACCCTGCGAAATTTGGGCATGGGGAAAAGGAACATTGAGGACCGTGTTCAAGAGGAAGCACAGTGTCTTGTGGAAGAACTGAGGAAAACCAAAG tatgttgttggtctcaccatctctatttttgtatatttttctcttttaagGCATTGTTTTTACCAATGGAAACAAATGGAAGAGGATGATGAGACAATTCACACTCATGACCTTACGAAATTTGGGAATGGGTAAACGTAACATAGTAGAACATGTTCAAGAGGAAGCACAATGTCTTGCAGAAGAATTAAGGAAAACTAATGgtaggaaccaattggcacagttgcaagatggtttagtgggggaacacagg Alignment from Spaln_nt2Genome GCGTTGTTTTTAGCAATGGAAACAGATGGAAA--GA-GATGAGACGATTTACACTCATGACCCTGCGAAATTTGGGCATGGGGAAAAGGAACATTGAGGACCGTGTTCAAGAGGAAGCACAGTGTCTTGTGGAAGAACTGAGGAAAACCAAAG tatgttgttggtctcaccatctctatttttgtatatttttctcttttaagGCATTGTTTTTACCAATGGAAACAAATGGAAGAGGATGATGAGACAATTCACACTCATGACCTTACGAAATTTGGGAATGGGTAAACGTAACATAGTAGAACATGTTCAAGAGGAAGCACAATGTCTTGCAGAAGAATTAAGGAAAACTAATGgtaggaaccaattggcacagttgcaagatggtttagtgggggaacacagg Alignment from Pairagon GCGTTGTTTTTAGCAATGGAAACAGATGGAAAGA----GATGAGACGATTTACACTCATGACCCTGCGAAATTTGGGCATGGGGAAAAGGAACATTGAGGACCGTGTTCAAGAGGAAGCACAGTGTCTTGTGGAAGAACTGAGGAAAACCAAAG tatgttgttggtctcaccatctctatttttgtatatttttctcttttaagGCATTGTTTTTACCAATGGAAACAAATGG-AAGAGGATGATGAGACAATTCACACTCATGACCTTACGAAATTTGGGAATGGGTAAACGTAACATAGTAGAACATGTTCAAGAGGAAGCACAATGTCTTGCAGAAGAATTAAGGAAAACTAATGgtaggaaccaattggcacagttgcaagatggtttagtgggggaacacagg Alignment from Exonerate_protein2genome GCGTTGTTTTTAGCAATGGAAACAGATGGAAAGAG---ATGAGACGATTTACACTCATGACCCTGCGAAATTTGGGCATGGGGAAAAGGAACATTGAGGACCGTGTTCAAGAGGAAGCACAGTGTCTTGTGGAAGAACTGAGGAAAACCAAAGGCT tatgttgttggtctcaccatctctatttttgtatatttttctcttttaagGCATTGTTTTTACCAATGGAAACAAATGGAAGAGGATGATGAGACAATTCACACTCATGACCTTACGAAATTTGGGAATGGGTAAACGTAACATAGTAGAACATGTTCAAGAGGAAGCACAATGTCTTGCAGAAGAATTAAGGAAAACTAATGGTAggaaccaattggcacagttgcaagatggtttagtgggggaacacagg Alignment from Exonerate_coding2genome GCGTTGTTTTTAGCAATGGAAACAGATGGAAAGAG---ATGAGACGATTTACACTCATGACCCTGCGAAATTTGGGCATGGGGAAAAGGAACATTGAGGACCGTGTTCAAGAGGAAGCACAGTGTCTTGTGGAAGAACTGAGGAAAACCAAAGGCT tatgttgttggtctcaccatctctatttttgtatatttttctcttttaagGCATTGTTTTTACCAATGGAAACAAATGGAAGAGGATGATGAGACAATTCACACTCATGACCTTACGAAATTTGGGAATGGGTAAACGTAACATAGTAGAACATGTTCAAGAGGAAGCACAATGTCTTGCAGAAGAATTAAGGAAAACTAATGGTAggaaccaattggcacagttgcaagatggtttagtgggggaacacagg Alignment from GeneWise GCGTTGTTTTTAGCAATGGAAACAGATGGAAAGAGATG---AGACGATTTACACTCATGACCCTGCGAAATTTGGGCATGGGGAAAAGGAACATTGAGGACCGTGTTCAAGAGGAAGCACAGTGTCTTGTGGAAGAACTGAGGAAAACCAAAG tatgttgttggtctcaccatctctatttttgtatatttttctcttttaagGCATTGTTTTTACCAATGGAAACAAATGGAAGAGGATGATGAGACAATTCACACTCATGACCTTACGAAATTTGGGAATGGGTAAACGTAACATAGTAGAACATGTTCAAGAGGAAGCACAATGTCTTGCAGAAGAATTAAGGAAAACTAATGgtaggaaccaattggcacagttgcaagatggtttagtgggggaacacagg #### Cyp2c29_ID7763_6 --> 0 - 1 Original Alignment GTAAACCACATTGAACAATCAGAGTTTTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAg cagtcataggttgcccaataaattaaatacctcctgtctctctacaacagGTAAACCATATTGAGCCCTCAGAGTTCTCGCTTGAAAACCTAGCAAGCACAATAAATGACCTCTTTGGGGCAGGGACAAAAACCACACACACAACACTGAGATATGCCCTCCTACTCTTACTGAAATATCCAGATGTCACTggtatgaccacacacaactggtgctgctgcacacagttgaagtatgcaaca Alignment from CESAR GTAAACCACATTGAACAATCAGAGTTTTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAg cagtcataggttgcccaataaattaaatacctcctgtctctctacaacagGTAAACCATATTGAGCCCTCAGAGTTCTCGCTTGAAAACCTAGCAAGCACAATAAATGACCTCTTTGGGGCAGGGACAAAAACCACACACACAACACTGAGATATGCCCTCCTACTCTTACTGAAATATCCAGATGTCACTggtatgaccacacacaactggtgctgctgcacacagttgaagtatgcaaca Alignment from Spaln_aa2Genome GTAAACCACATTGAACAATCAGAGTTTTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAG cagtcataggttgcccaataaattaaatacctcctgtctctctacaacagGTAAACCATATTGAGCCCTCAGAGTTCTCGCTTGAAAACCTAGCAAGCACAATAAATGACCTCTTTGGGGCAGGGACAAAAACCACACACACAACACTGAGATATGCCCTCCTACTCTTACTGAAATATCCAGATGTCACTGgtatgaccacacacaactggtgctgctgcacacagttgaagtatgcaaca Alignment from Spaln_nt2Genome GTAAACCACATTGAACAATCAGAGTTTTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAG cagtcataggttgcccaataaattaaatacctcctgtctctctacaacagGTAAACCATATTGAGCCCTCAGAGTTCTCGCTTGAAAACCTAGCAAGCACAATAAATGACCTCTTTGGGGCAGGGACAAAAACCACACACACAACACTGAGATATGCCCTCCTACTCTTACTGAAATATCCAGATGTCACTGgtatgaccacacacaactggtgctgctgcacacagttgaagtatgcaaca Alignment from Pairagon GTAAACCACATTGAACAATCAGAGTTTTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAG cagtcataggttgcccaataaattaaatacctcctgtctctctacaacagGTAAACCATATTGAGCCCTCAGAGTTCTCGCTTGAAAACCTAGCAAGCACAATAAATGACCTCTTTGGGGCAGGGACAAAAACCACACACACAACACTGAGATATGCCCTCCTACTCTTACTGAAATATCCAGATGTCACTGgtatgaccacacacaactggtgctgctgcacacagttgaagtatgcaaca Alignment from Exonerate_protein2genome GTAAACCACATTGAACAATCAGAGTTTTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAG cagtcataggttgcccaataaattaaatacctcctgtctctctacaacagGTAAACCATATTGAGCCCTCAGAGTTCTCGCTTGAAAACCTAGCAAGCACAATAAATGACCTCTTTGGGGCAGGGACAAAAACCACACACACAACACTGAGATATGCCCTCCTACTCTTACTGAAATATCCAGATGTCACTGgtatgaccacacacaactggtgctgctgcacacagttgaagtatgcaaca Alignment from Exonerate_coding2genome GTAAACCACATTGAACAATCAGAGTTTTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAG cagtcataggttgcccaataaattaaatacctcctgtctctctacaacagGTAAACCATATTGAGCCCTCAGAGTTCTCGCTTGAAAACCTAGCAAGCACAATAAATGACCTCTTTGGGGCAGGGACAAAAACCACACACACAACACTGAGATATGCCCTCCTACTCTTACTGAAATATCCAGATGTCACTGgtatgaccacacacaactggtgctgctgcacacagttgaagtatgcaaca Alignment from GeneWise GTAAACCACATTGAACAATCAGAGTTTTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAG cagtcataggttgcccaataaattaaatacctcctgtctctctacaacagGTAAACCATATTGAGCCCTCAGAGTTCTCGCTTGAAAACCTAGCAAGCACAATAAATGACCTCTTTGGGGCAGGGACAAAAACCACACACACAACACTGAGATATGCCCTCCTACTCTTACTGAAATATCCAGATGTCACTGgtatgaccacacacaactggtgctgctgcacacagttgaagtatgcaaca #### Cyp2c37_ID7845_8 --> 0 - 1 Original Alignment GGAACAACTGTAATAACATCACTGTCATCAGTGCTGCATGACAGCACGGAGTTCCCCAAC---CCAGAGAAATTTGACCCTGGCCACTTTCTAGATGAGAATGGAAAGTTTAAGAAAAGTGACTACTTCATTCCCTTCTCAACAg tgtttttttgatccagcagtgtgttaatctatgaaattttctttttctagGGTACTACTGTAATAACACCACTATCGTTGGTGCTATATGACAGGATGGAATATCCAAACCACCCAGAGAAATTTGACCCCAGCCATTTTCTAGATGAGAATGGAAGGTTTAAAATAAGTGACTACTTTATTCCCTTCTCAACAggtacataagtttcattcttgtataattggctcaaagttttaaatctcaaa Alignment from CESAR GGAACAACTGTAATAACATCACTGTCATCAGTGCTGCATGACAGCACGGAGTTCCCCAAC---CCAGAGAAATTTGACCCTGGCCACTTTCTAGATGAGAATGGAAAGTTTAAGAAAAGTGACTACTTCATTCCCTTCTCAACAg tgtttttttgatccagcagtgtgttaatctatgaaattttctttttctagGGTACTACTGTAATAACACCACTATCGTTGGTGCTATATGACAGGATGGAATATCCAAACCACCCAGAGAAATTTGACCCCAGCCATTTTCTAGATGAGAATGGAAGGTTTAAAATAAGTGACTACTTTATTCCCTTCTCAACAggtacataagtttcattcttgtataattggctcaaagttttaaatctcaaa Alignment from Spaln_aa2Genome GGAACAACTGTAATAACATCACTGTCATCAGTGCTGCATGACAGCACGGAGTTCCCCAAC---CCAGAGAAATTTGACCCTGGCCACTTTCTAGATGAGAATGGAAAGTTTAAGAAAAGTGACTACTTCATTCCCTTCTCAACAG tgtttttttgatccagcagtgtgttaatctatgaaattttctttttctagGGTACTACTGTAATAACACCACTATCGTTGGTGCTATATGACAGGATGGAATATCCAAACCACCCAGAGAAATTTGACCCCAGCCATTTTCTAGATGAGAATGGAAGGTTTAAAATAAGTGACTACTTTATTCCCTTCTCAACAGgtacataagtttcattcttgtataattggctcaaagttttaaatctcaaa Alignment from Spaln_nt2Genome GGAACAACTGTAATAACATCACTGTCATCAGTGCTGCATGACAGCACGGAGTTCCCCAACC---CAGAGAAATTTGACCCTGGCCACTTTCTAGATGAGAATGGAAAGTTTAAGAAAAGTGACTACTTCATTCCCTTCTCAACAG tgtttttttgatccagcagtgtgttaatctatgaaattttctttttctagGGTACTACTGTAATAACACCACTATCGTTGGTGCTATATGACAGGATGGAATATCCAAACCACCCAGAGAAATTTGACCCCAGCCATTTTCTAGATGAGAATGGAAGGTTTAAAATAAGTGACTACTTTATTCCCTTCTCAACAGgtacataagtttcattcttgtataattggctcaaagttttaaatctcaaa Alignment from Pairagon GGAACAACTGTAATAACATCACTGTCATCAGTGCTGCATGACAGCACGGAGTTCCC---CAACCCAGAGAAATTTGACCCTGGCCACTTTCTAGATGAGAATGGAAAGTTTAAGAAAAGTGACTACTTCATTCCCTTCTCAACAG tgtttttttgatccagcagtgtgttaatctatgaaattttctttttctagGGTACTACTGTAATAACACCACTATCGTTGGTGCTATATGACAGGATGGAATATCCAAACCACCCAGAGAAATTTGACCCCAGCCATTTTCTAGATGAGAATGGAAGGTTTAAAATAAGTGACTACTTTATTCCCTTCTCAACAGgtacataagtttcattcttgtataattggctcaaagttttaaatctcaaa Alignment from Exonerate_protein2genome GGAACAACTGTAATAACATCACTGTCATCAGTGCTGCATGACAGCACGGAGTTCCCCAAC---CCAGAGAAATTTGACCCTGGCCACTTTCTAGATGAGAATGGAAAGTTTAAGAAAAGTGACTACTTCATTCCCTTCTCAACAG tgtttttttgatccagcagtgtgttaatctatgaaattttctttttctagGGTACTACTGTAATAACACCACTATCGTTGGTGCTATATGACAGGATGGAATATCCAAACCACCCAGAGAAATTTGACCCCAGCCATTTTCTAGATGAGAATGGAAGGTTTAAAATAAGTGACTACTTTATTCCCTTCTCAACAGgtacataagtttcattcttgtataattggctcaaagttttaaatctcaaa Alignment from Exonerate_coding2genome GGAACAACTGTAATAACATCACTGTCATCAGTGCTGCATGACAGCACGGAGTTCCCCAAC---CCAGAGAAATTTGACCCTGGCCACTTTCTAGATGAGAATGGAAAGTTTAAGAAAAGTGACTACTTCATTCCCTTCTCAACAG tgtttttttgatccagcagtgtgttaatctatgaaattttctttttctagGGTACTACTGTAATAACACCACTATCGTTGGTGCTATATGACAGGATGGAATATCCAAACCACCCAGAGAAATTTGACCCCAGCCATTTTCTAGATGAGAATGGAAGGTTTAAAATAAGTGACTACTTTATTCCCTTCTCAACAGgtacataagtttcattcttgtataattggctcaaagttttaaatctcaaa Alignment from GeneWise GGAACAACTGTAATAACATCACTGTCATCAGTGCTGCATGACAGCACGGAGTTCCCCAAC---CCAGAGAAATTTGACCCTGGCCACTTTCTAGATGAGAATGGAAAGTTTAAGAAAAGTGACTACTTCATTCCCTTCTCAACAG tgtttttttgatccagcagtgtgttaatctatgaaattttctttttctagGGTACTACTGTAATAACACCACTATCGTTGGTGCTATATGACAGGATGGAATATCCAAACCACCCAGAGAAATTTGACCCCAGCCATTTTCTAGATGAGAATGGAAGGTTTAAAATAAGTGACTACTTTATTCCCTTCTCAACAGgtacataagtttcattcttgtataattggctcaaagttttaaatctcaaa #### Cyp2c38_ID7776_4 --> 2 - 0 Original Alignment gcTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTTCAAGATCGTTTTGATTACAAGGATAAAGATTTTCTTATGCTCATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG ctttgctactgacactgtttagccttattttatttccattccatcattaggcTCACCTTGTGACGCCACATTCATTCCAAGCTGTGCCCCATGCAATGTCACTTGCTCAATTATATATCAGGATCGTTTTGATTACAAGGACAAAGATTTCCTTATGCTTATGAAAAAACTAAATGAGAATGTTAAGATTTTGAGCTCCCCATGGTTGCAGgtaagttcaggcacaatttttttgttggtgaaaccattcctcacgcaaat Alignment from CESAR gcTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTTCAAGATCGTTTTGATTACAAGGATAAAGATTTTCTTATGCTCATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG ctttgctactgacactgtttagccttattttatttccattccatcattaggcTCACCTTGTGACGCCACATTCATTCCAAGCTGTGCCCCATGCAATGTCACTTGCTCAATTATATATCAGGATCGTTTTGATTACAAGGACAAAGATTTCCTTATGCTTATGAAAAAACTAAATGAGAATGTTAAGATTTTGAGCTCCCCATGGTTGCAGgtaagttcaggcacaatttttttgttggtgaaaccattcctcacgcaaat Alignment from Spaln_aa2Genome GCTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTTCAAGATCGTTTTGATTACAAGGATAAAGATTTTCTTATGCTCATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG ctttgctactgacactgtttagccttattttatttccattccatcattagGCTCACCTTGTGACGCCACATTCATTCCAAGCTGTGCCCCATGCAATGTCACTTGCTCAATTATATATCAGGATCGTTTTGATTACAAGGACAAAGATTTCCTTATGCTTATGAAAAAACTAAATGAGAATGTTAAGATTTTGAGCTCCCCATGGTTGCAGgtaagttcaggcacaatttttttgttggtgaaaccattcctcacgcaaat Alignment from Spaln_nt2Genome GCTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTTCAAGATCGTTTTGATTACAAGGATAAAGATTTTCTTATGCTCATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG ctttgctactgacactgtttagccttattttatttccattccatcattagGCTCACCTTGTGACGCCACATTCATTCCAAGCTGTGCCCCATGCAATGTCACTTGCTCAATTATATATCAGGATCGTTTTGATTACAAGGACAAAGATTTCCTTATGCTTATGAAAAAACTAAATGAGAATGTTAAGATTTTGAGCTCCCCATGGTTGCAGgtaagttcaggcacaatttttttgttggtgaaaccattcctcacgcaaat Alignment from Pairagon GCTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTTCAAGATCGTTTTGATTACAAGGATAAAGATTTTCTTATGCTCATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG ctttgctactgacactgtttagccttattttatttccattccatcattagGCTCACCTTGTGACGCCACATTCATTCCAAGCTGTGCCCCATGCAATGTCACTTGCTCAATTATATATCAGGATCGTTTTGATTACAAGGACAAAGATTTCCTTATGCTTATGAAAAAACTAAATGAGAATGTTAAGATTTTGAGCTCCCCATGGTTGCAGgtaagttcaggcacaatttttttgttggtgaaaccattcctcacgcaaat Alignment from Exonerate_protein2genome GCTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTTCAAGATCGTTTTGATTACAAGGATAAAGATTTTCTTATGCTCATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG ctttgctactgacactgtttagccttattttatttccattccatcattagGCTCACCTTGTGACGCCACATTCATTCCAAGCTGTGCCCCATGCAATGTCACTTGCTCAATTATATATCAGGATCGTTTTGATTACAAGGACAAAGATTTCCTTATGCTTATGAAAAAACTAAATGAGAATGTTAAGATTTTGAGCTCCCCATGGTTGCAGgtaagttcaggcacaatttttttgttggtgaaaccattcctcacgcaaat Alignment from Exonerate_coding2genome GCTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTTCAAGATCGTTTTGATTACAAGGATAAAGATTTTCTTATGCTCATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG ctttgctactgacactgtttagccttattttatttccattccatcattagGCTCACCTTGTGACGCCACATTCATTCCAAGCTGTGCCCCATGCAATGTCACTTGCTCAATTATATATCAGGATCGTTTTGATTACAAGGACAAAGATTTCCTTATGCTTATGAAAAAACTAAATGAGAATGTTAAGATTTTGAGCTCCCCATGGTTGCAGgtaagttcaggcacaatttttttgttggtgaaaccattcctcacgcaaat Alignment from GeneWise GCTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTTCAAGATCGTTTTGATTACAAGGATAAAGATTTTCTTATGCTCATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG ctttgctactgacactgtttagccttattttatttccattccatcattagGCTCACCTTGTGACGCCACATTCATTCCAAGCTGTGCCCCATGCAATGTCACTTGCTCAATTATATATCAGGATCGTTTTGATTACAAGGACAAAGATTTCCTTATGCTTATGAAAAAACTAAATGAGAATGTTAAGATTTTGAGCTCCCCATGGTTGCAGgtaagttcaggcacaatttttttgttggtgaaaccattcctcacgcaaat #### Cyp2c38_ID7777_3 --> 2 - 1 Original Alignment gcATTACTTTTAGCAATGGAAACAGTTGGAAAGAGACAAGACGTTTCACACTCATGACCCTAAGGAATTTGGGCATGGGGAAAAGGAACATTGAGGATCGTGTTCGAGAAGAAGCACAGTGTCTTGTGGAAGAACTAAGGAAAACCAAGg aaacactgccatactccattacattttccaggcatctcccctcacctcaggcATCACTTTTAGTAATGGCAATAGTTGGAAAGACACAAGATGTTTTTCCTTGATGACCCTAAGGAATTTAGGCATGGGCAGAGGGAACATTGAAGATCATGTTCAAGAGGAAGCACAGTGTTTGGTGGAAGAGTTGAAGAAAAGTAAGggtaagtgacaatgtgtacactagcatctttatagggaaccatcctcttct Alignment from CESAR gcATTACTTTTAGCAATGGAAACAGTTGGAAAGAGACAAGACGTTTCACACTCATGACCCTAAGGAATTTGGGCATGGGGAAAAGGAACATTGAGGATCGTGTTCGAGAAGAAGCACAGTGTCTTGTGGAAGAACTAAGGAAAACCAAGg aaacactgccatactccattacattttccaggcatctcccctcacctcaggcATCACTTTTAGTAATGGCAATAGTTGGAAAGACACAAGATGTTTTTCCTTGATGACCCTAAGGAATTTAGGCATGGGCAGAGGGAACATTGAAGATCATGTTCAAGAGGAAGCACAGTGTTTGGTGGAAGAGTTGAAGAAAAGTAAGggtaagtgacaatgtgtacactagcatctttatagggaaccatcctcttct Alignment from Spaln_aa2Genome GCATTACTTTTAGCAATGGAAACAGTTGGAAAGAGACAAGACGTTTCACACTCATGACCCTAAGGAATTTGGGCATGGGGAAAAGGAACATTGAGGATCGTGTTCGAGAAGAAGCACAGTGTCTTGTGGAAGAACTAAGGAAAACCAAGG aaacactgccatactccattacattttccaggcatctcccctcacctcagGCATCACTTTTAGTAATGGCAATAGTTGGAAAGACACAAGATGTTTTTCCTTGATGACCCTAAGGAATTTAGGCATGGGCAGAGGGAACATTGAAGATCATGTTCAAGAGGAAGCACAGTGTTTGGTGGAAGAGTTGAAGAAAAGTAAGGgtaagtgacaatgtgtacactagcatctttatagggaaccatcctcttct Alignment from Spaln_nt2Genome GCATTACTTTTAGCAATGGAAACAGTTGGAAAGAGACAAGACGTTTCACACTCATGACCCTAAGGAATTTGGGCATGGGGAAAAGGAACATTGAGGATCGTGTTCGAGAAGAAGCACAGTGTCTTGTGGAAGAACTAAGGAAAACCAAGG aaacactgccatactccattacattttccaggcatctcccctcacctcagGCATCACTTTTAGTAATGGCAATAGTTGGAAAGACACAAGATGTTTTTCCTTGATGACCCTAAGGAATTTAGGCATGGGCAGAGGGAACATTGAAGATCATGTTCAAGAGGAAGCACAGTGTTTGGTGGAAGAGTTGAAGAAAAGTAAGGgtaagtgacaatgtgtacactagcatctttatagggaaccatcctcttct Alignment from Pairagon GCATTACTTTTAGCAATGGAAACAGTTGGAAAGAGACAAGACGTTTCACACTCATGACCCTAAGGAATTTGGGCATGGGGAAAAGGAACATTGAGGATCGTGTTCGAGAAGAAGCACAGTGTCTTGTGGAAGAACTAAGGAAAACCAAGG aaacactgccatactccattacattttccaggcatctcccctcacctcagGCATCACTTTTAGTAATGGCAATAGTTGGAAAGACACAAGATGTTTTTCCTTGATGACCCTAAGGAATTTAGGCATGGGCAGAGGGAACATTGAAGATCATGTTCAAGAGGAAGCACAGTGTTTGGTGGAAGAGTTGAAGAAAAGTAAGGgtaagtgacaatgtgtacactagcatctttatagggaaccatcctcttct Alignment from Exonerate_protein2genome GCATTACTTTTAGCAATGGAAACAGTTGGAAAGAGACAAGACGTTTCACACTCATGACCCTAAGGAATTTGGGCATGGGGAAAAGGAACATTGAGGATCGTGTTCGAGAAGAAGCACAGTGTCTTGTGGAAGAACTAAGGAAAACCAAGG aaacactgccatactccattacattttccaggcatctcccctcacctcagGCATCACTTTTAGTAATGGCAATAGTTGGAAAGACACAAGATGTTTTTCCTTGATGACCCTAAGGAATTTAGGCATGGGCAGAGGGAACATTGAAGATCATGTTCAAGAGGAAGCACAGTGTTTGGTGGAAGAGTTGAAGAAAAGTAAGGgtaagtgacaatgtgtacactagcatctttatagggaaccatcctcttct Alignment from Exonerate_coding2genome GCATTACTTTTAGCAATGGAAACAGTTGGAAAGAGACAAGACGTTTCACACTCATGACCCTAAGGAATTTGGGCATGGGGAAAAGGAACATTGAGGATCGTGTTCGAGAAGAAGCACAGTGTCTTGTGGAAGAACTAAGGAAAACCAAGG aaacactgccatactccattacattttccaggcatctcccctcacctcagGCATCACTTTTAGTAATGGCAATAGTTGGAAAGACACAAGATGTTTTTCCTTGATGACCCTAAGGAATTTAGGCATGGGCAGAGGGAACATTGAAGATCATGTTCAAGAGGAAGCACAGTGTTTGGTGGAAGAGTTGAAGAAAAGTAAGGgtaagtgacaatgtgtacactagcatctttatagggaaccatcctcttct Alignment from GeneWise GCATTACTTTTAGCAATGGAAACAGTTGGAAAGAGACAAGACGTTTCACACTCATGACCCTAAGGAATTTGGGCATGGGGAAAAGGAACATTGAGGATCGTGTTCGAGAAGAAGCACAGTGTCTTGTGGAAGAACTAAGGAAAACCAAGG aaacactgccatactccattacattttccaggcatctcccctcacctcagGCATCACTTTTAGTAATGGCAATAGTTGGAAAGACACAAGATGTTTTTCCTTGATGACCCTAAGGAATTTAGGCATGGGCAGAGGGAACATTGAAGATCATGTTCAAGAGGAAGCACAGTGTTTGGTGGAAGAGTTGAAGAAAAGTAAGGgtaagtgacaatgtgtacactagcatctttatagggaaccatcctcttct #### Cyp2c39_ID7783_2 --> 0 - 1 Original Alignment TTCTCAAAAGCCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAGGAGTTTTCTGATAGAGGAAGCATTCCAATGGTAGAAAAGATTAATAACGGCCTTg ttgtagaagtccaggatcattagtgttcactgcttctgttccttccacagTTTTCAAAAGCCTATGGCCCCCTGTTCACTGTGTATTTGGGCTCTTGTCCCACTGTTGTACTATATGGGTATGAAGCAGTGAAGGAGGCTCTGATTGATCATGGAGAAGAGTTCTCTGACAGAGGAAGCATCCCAATGATAGATGAGATTAATAATGGCCTAggtgagcaaaagaatatgcaagttcagattagaggctatgagaaattaatt Alignment from CESAR TTCTCAAAAGCCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAGGAGTTTTCTGATAGAGGAAGCATTCCAATGGTAGAAAAGATTAATAACGGCCTTg ttgtagaagtccaggatcattagtgttcactgcttctgttccttccacagTTTTCAAAAGCCTATGGCCCCCTGTTCACTGTGTATTTGGGCTCTTGTCCCACTGTTGTACTATATGGGTATGAAGCAGTGAAGGAGGCTCTGATTGATCATGGAGAAGAGTTCTCTGACAGAGGAAGCATCCCAATGATAGATGAGATTAATAATGGCCTAggtgagcaaaagaatatgcaagttcagattagaggctatgagaaattaatt Alignment from Spaln_aa2Genome TTCTCAAAAGCCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAGGAGTTTTCTGATAGAGGAAGCATTCCAATGGTAGAAAAGATTAATAACGGCCTTG ttgtagaagtccaggatcattagtgttcactgcttctgttccttccacagTTTTCAAAAGCCTATGGCCCCCTGTTCACTGTGTATTTGGGCTCTTGTCCCACTGTTGTACTATATGGGTATGAAGCAGTGAAGGAGGCTCTGATTGATCATGGAGAAGAGTTCTCTGACAGAGGAAGCATCCCAATGATAGATGAGATTAATAATGGCCTAGgtgagcaaaagaatatgcaagttcagattagaggctatgagaaattaatt Alignment from Spaln_nt2Genome TTCTCAAAAGCCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAGGAGTTTTCTGATAGAGGAAGCATTCCAATGGTAGAAAAGATTAATAACGGCCTTG ttgtagaagtccaggatcattagtgttcactgcttctgttccttccacagTTTTCAAAAGCCTATGGCCCCCTGTTCACTGTGTATTTGGGCTCTTGTCCCACTGTTGTACTATATGGGTATGAAGCAGTGAAGGAGGCTCTGATTGATCATGGAGAAGAGTTCTCTGACAGAGGAAGCATCCCAATGATAGATGAGATTAATAATGGCCTAGgtgagcaaaagaatatgcaagttcagattagaggctatgagaaattaatt Alignment from Pairagon TTCTCAAAAGCCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAGGAGTTTTCTGATAGAGGAAGCATTCCAATGGTAGAAAAGATTAATAACGGCCTTG ttgtagaagtccaggatcattagtgttcactgcttctgttccttccacagTTTTCAAAAGCCTATGGCCCCCTGTTCACTGTGTATTTGGGCTCTTGTCCCACTGTTGTACTATATGGGTATGAAGCAGTGAAGGAGGCTCTGATTGATCATGGAGAAGAGTTCTCTGACAGAGGAAGCATCCCAATGATAGATGAGATTAATAATGGCCTAGgtgagcaaaagaatatgcaagttcagattagaggctatgagaaattaatt Alignment from Exonerate_protein2genome TTCTCAAAAGCCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAGGAGTTTTCTGATAGAGGAAGCATTCCAATGGTAGAAAAGATTAATAACGGCCTTG ttgtagaagtccaggatcattagtgttcactgcttctgttccttccacagTTTTCAAAAGCCTATGGCCCCCTGTTCACTGTGTATTTGGGCTCTTGTCCCACTGTTGTACTATATGGGTATGAAGCAGTGAAGGAGGCTCTGATTGATCATGGAGAAGAGTTCTCTGACAGAGGAAGCATCCCAATGATAGATGAGATTAATAATGGCCTAGgtgagcaaaagaatatgcaagttcagattagaggctatgagaaattaatt Alignment from Exonerate_coding2genome TTCTCAAAAGCCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAGGAGTTTTCTGATAGAGGAAGCATTCCAATGGTAGAAAAGATTAATAACGGCCTTG ttgtagaagtccaggatcattagtgttcactgcttctgttccttccacagTTTTCAAAAGCCTATGGCCCCCTGTTCACTGTGTATTTGGGCTCTTGTCCCACTGTTGTACTATATGGGTATGAAGCAGTGAAGGAGGCTCTGATTGATCATGGAGAAGAGTTCTCTGACAGAGGAAGCATCCCAATGATAGATGAGATTAATAATGGCCTAGgtgagcaaaagaatatgcaagttcagattagaggctatgagaaattaatt Alignment from GeneWise TTCTCAAAAGCCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAGGAGTTTTCTGATAGAGGAAGCATTCCAATGGTAGAAAAGATTAATAACGGCCTTG ttgtagaagtccaggatcattagtgttcactgcttctgttccttccacagTTTTCAAAAGCCTATGGCCCCCTGTTCACTGTGTATTTGGGCTCTTGTCCCACTGTTGTACTATATGGGTATGAAGCAGTGAAGGAGGCTCTGATTGATCATGGAGAAGAGTTCTCTGACAGAGGAAGCATCCCAATGATAGATGAGATTAATAATGGCCTAGgtgagcaaaagaatatgcaagttcagattagaggctatgagaaattaatt #### Cyp2c39_ID7784_3 --> 2 - 1 Original Alignment gcATTGTTTTTAGCAATGGAAACAGATGGAAAGAGATTAGGCGC---TTCACACTCACGACCCTGCGAAATTTGGGAATGGGAAAAAGGAACATTGAGGACCGTGTTCAAGAGGAAGCACAGTGTCTTGTGGAAGAACTAAGGAAAACCAAGg caccttacataccactagcacatattttaaataattgttaattctttcaggcATTGTTTTTAGAAATGGGAACCAGTGGAAAGAAATTAGGCATTTTTTCACACTTGCAACCTTGCAAAATCTGGGTATGGGAAAAAGGAATATTGAGGACCATGTACAGGAGGAGGTACAATGTCTTGTGGAAGAGCTCAGGAAAATAAAAggtaggaataaaccaatgcatatgtaccttctgatatgcttcagcttattt Alignment from CESAR gcATTGTTTTTAGCAATGGAAACAGATGGAAAGAGATTAGGCGC---TTCACACTCACGACCCTGCGAAATTTGGGAATGGGAAAAAGGAACATTGAGGACCGTGTTCAAGAGGAAGCACAGTGTCTTGTGGAAGAACTAAGGAAAACCAAGg caccttacataccactagcacatattttaaataattgttaattctttcaggcATTGTTTTTAGAAATGGGAACCAGTGGAAAGAAATTAGGCATTTTTTCACACTTGCAACCTTGCAAAATCTGGGTATGGGAAAAAGGAATATTGAGGACCATGTACAGGAGGAGGTACAATGTCTTGTGGAAGAGCTCAGGAAAATAAAAggtaggaataaaccaatgcatatgtaccttctgatatgcttcagcttattt Alignment from Spaln_aa2Genome GCATTGTTTTTAGCAATGGAAACAGATGGAAAGAGATTAGGCGC---TTCACACTCACGACCCTGCGAAATTTGGGAATGGGAAAAAGGAACATTGAGGACCGTGTTCAAGAGGAAGCACAGTGTCTTGTGGAAGAACTAAGGAAAACCAAGG caccttacataccactagcacatattttaaataattgttaattctttcagGCATTGTTTTTAGAAATGGGAACCAGTGGAAAGAAATTAGGCATTTTTTCACACTTGCAACCTTGCAAAATCTGGGTATGGGAAAAAGGAATATTGAGGACCATGTACAGGAGGAGGTACAATGTCTTGTGGAAGAGCTCAGGAAAATAAAAGgtaggaataaaccaatgcatatgtaccttctgatatgcttcagcttattt Alignment from Spaln_nt2Genome GCATTGTTTTTAGCAATGGAAACAGATGGAAAGAGATTAGGCGCTT---CACACTCACGACCCTGCGAAATTTGGGAATGGGAAAAAGGAACATTGAGGACCGTGTTCAAGAGGAAGCACAGTGTCTTGTGGAAGAACTAAGGAAAACCAAGG caccttacataccactagcacatattttaaataattgttaattctttcagGCATTGTTTTTAGAAATGGGAACCAGTGGAAAGAAATTAGGCATTTTTTCACACTTGCAACCTTGCAAAATCTGGGTATGGGAAAAAGGAATATTGAGGACCATGTACAGGAGGAGGTACAATGTCTTGTGGAAGAGCTCAGGAAAATAAAAGgtaggaataaaccaatgcatatgtaccttctgatatgcttcagcttattt Alignment from Pairagon GCATTGTTTTTAGCAATGGAAACAGATGGAAAGAGATTAGGCG---CTTCACACTCACGACCCTGCGAAATTTGGGAATGGGAAAAAGGAACATTGAGGACCGTGTTCAAGAGGAAGCACAGTGTCTTGTGGAAGAACTAAGGAAAACCAAGG caccttacataccactagcacatattttaaataattgttaattctttcagGCATTGTTTTTAGAAATGGGAACCAGTGGAAAGAAATTAGGCATTTTTTCACACTTGCAACCTTGCAAAATCTGGGTATGGGAAAAAGGAATATTGAGGACCATGTACAGGAGGAGGTACAATGTCTTGTGGAAGAGCTCAGGAAAATAAAAGgtaggaataaaccaatgcatatgtaccttctgatatgcttcagcttattt Alignment from Exonerate_protein2genome GCATTGTTTTTAGCAATGGAAACAGATGGAAAGAGATTAGGCGC---TTCACACTCACGACCCTGCGAAATTTGGGAATGGGAAAAAGGAACATTGAGGACCGTGTTCAAGAGGAAGCACAGTGTCTTGTGGAAGAACTAAGGAAAACCAAGG caccttacataccactagcacatattttaaataattgttaattctttcagGCATTGTTTTTAGAAATGGGAACCAGTGGAAAGAAATTAGGCATTTTTTCACACTTGCAACCTTGCAAAATCTGGGTATGGGAAAAAGGAATATTGAGGACCATGTACAGGAGGAGGTACAATGTCTTGTGGAAGAGCTCAGGAAAATAAAAGgtaggaataaaccaatgcatatgtaccttctgatatgcttcagcttattt Alignment from Exonerate_coding2genome GCATTGTTTTTAGCAATGGAAACAGATGGAAAGAGATTAGGCGC---TTCACACTCACGACCCTGCGAAATTTGGGAATGGGAAAAAGGAACATTGAGGACCGTGTTCAAGAGGAAGCACAGTGTCTTGTGGAAGAACTAAGGAAAACCAAGG caccttacataccactagcacatattttaaataattgttaattctttcagGCATTGTTTTTAGAAATGGGAACCAGTGGAAAGAAATTAGGCATTTTTTCACACTTGCAACCTTGCAAAATCTGGGTATGGGAAAAAGGAATATTGAGGACCATGTACAGGAGGAGGTACAATGTCTTGTGGAAGAGCTCAGGAAAATAAAAGgtaggaataaaccaatgcatatgtaccttctgatatgcttcagcttattt Alignment from GeneWise GCATTGTTTTTAGCAATGGAAACAGATGGAAAGAGATTAGGCGCTTC---ACACTCACGACCCTGCGAAATTTGGGAATGGGAAAAAGGAACATTGAGGACCGTGTTCAAGAGGAAGCACAGTGTCTTGTGGAAGAACTAAGGAAAACCAAGG caccttacataccactagcacatattttaaataattgttaattctttcagGCATTGTTTTTAGAAATGGGAACCAGTGGAAAGAAATTAGGCATTTTTTCACACTTGCAACCTTGCAAAATCTGGGTATGGGAAAAAGGAATATTGAGGACCATGTACAGGAGGAGGTACAATGTCTTGTGGAAGAGCTCAGGAAAATAAAAGgtaggaataaaccaatgcatatgtaccttctgatatgcttcagcttattt #### Cyp2c39_ID7785_4 --> 2 - 0 Original Alignment gcTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCCATTATTTTCCAGGATCGTTTTGATTATAAGGATAAAGATTTTCTTATGCTCATGGAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG agcatgttgcatgtgttggtcacaatccttctggattacggtctcctcagggTCACCTTGTGACCCCACATTTATTCTGAGCTGTGCTCCATGCAATATCATCTGCTCTATTATTTTTCAGGATCGTTTTGATTATAAGGATAAAGATTTTCTTATGCCCATAGAAAAACTAAATGAGAATGTCAAGATAGTAAGCTCCCCTTGGTTGCAGgcaagtttgaaaagttattttatttgacgccaaatgacacagctttacaa Alignment from CESAR gcTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCCATTATTTTCCAGGATCGTTTTGATTATAAGGATAAAGATTTTCTTATGCTCATGGAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG agcatgttgcatgtgttggtcacaatccttctggattacggtctcctcagggTCACCTTGTGACCCCACATTTATTCTGAGCTGTGCTCCATGCAATATCATCTGCTCTATTATTTTTCAGGATCGTTTTGATTATAAGGATAAAGATTTTCTTATGCCCATAGAAAAACTAAATGAGAATGTCAAGATAGTAAGCTCCCCTTGGTTGCAGgcaagtttgaaaagttattttatttgacgccaaatgacacagctttacaa Alignment from Spaln_aa2Genome GCTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCCATTATTTTCCAGGATCGTTTTGATTATAAGGATAAAGATTTTCTTATGCTCATGGAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG agcatgttgcatgtgttggtcacaatccttctggattacggtctcctcagGGTCACCTTGTGACCCCACATTTATTCTGAGCTGTGCTCCATGCAATATCATCTGCTCTATTATTTTTCAGGATCGTTTTGATTATAAGGATAAAGATTTTCTTATGCCCATAGAAAAACTAAATGAGAATGTCAAGATAGTAAGCTCCCCTTGGTTGCAGgcaagtttgaaaagttattttatttgacgccaaatgacacagctttacaa Alignment from Spaln_nt2Genome GCTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCCATTATTTTCCAGGATCGTTTTGATTATAAGGATAAAGATTTTCTTATGCTCATGGAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG agcatgttgcatgtgttggtcacaatccttctggattacggtctcctcagGGTCACCTTGTGACCCCACATTTATTCTGAGCTGTGCTCCATGCAATATCATCTGCTCTATTATTTTTCAGGATCGTTTTGATTATAAGGATAAAGATTTTCTTATGCCCATAGAAAAACTAAATGAGAATGTCAAGATAGTAAGCTCCCCTTGGTTGCAGgcaagtttgaaaagttattttatttgacgccaaatgacacagctttacaa Alignment from Pairagon GCTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCCATTATTTTCCAGGATCGTTTTGATTATAAGGATAAAGATTTTCTTATGCTCATGGAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG agcatgttgcatgtgttggtcacaatccttctggattacggtctcctcagGGTCACCTTGTGACCCCACATTTATTCTGAGCTGTGCTCCATGCAATATCATCTGCTCTATTATTTTTCAGGATCGTTTTGATTATAAGGATAAAGATTTTCTTATGCCCATAGAAAAACTAAATGAGAATGTCAAGATAGTAAGCTCCCCTTGGTTGCAGgcaagtttgaaaagttattttatttgacgccaaatgacacagctttacaa Alignment from Exonerate_protein2genome GCTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCCATTATTTTCCAGGATCGTTTTGATTATAAGGATAAAGATTTTCTTATGCTCATGGAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG agcatgttgcatgtgttggtcacaatccttctggattacggtctcctcagGGTCACCTTGTGACCCCACATTTATTCTGAGCTGTGCTCCATGCAATATCATCTGCTCTATTATTTTTCAGGATCGTTTTGATTATAAGGATAAAGATTTTCTTATGCCCATAGAAAAACTAAATGAGAATGTCAAGATAGTAAGCTCCCCTTGGTTGCAGgcaagtttgaaaagttattttatttgacgccaaatgacacagctttacaa Alignment from Exonerate_coding2genome GCTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCCATTATTTTCCAGGATCGTTTTGATTATAAGGATAAAGATTTTCTTATGCTCATGGAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG agcatgttgcatgtgttggtcacaatccttctggattacggtctcctcagGGTCACCTTGTGACCCCACATTTATTCTGAGCTGTGCTCCATGCAATATCATCTGCTCTATTATTTTTCAGGATCGTTTTGATTATAAGGATAAAGATTTTCTTATGCCCATAGAAAAACTAAATGAGAATGTCAAGATAGTAAGCTCCCCTTGGTTGCAGgcaagtttgaaaagttattttatttgacgccaaatgacacagctttacaa Alignment from GeneWise GCTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCCATTATTTTCCAGGATCGTTTTGATTATAAGGATAAAGATTTTCTTATGCTCATGGAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG-GTC agcatgttgcatgtgttggtcacaatccttctggattacggtctcctcagGGTCACCTTGTGACCCCACATTTATTCTGAGCTGTGCTCCATGCAATATCATCTGCTCTATTATTTTTCAGGATCGTTTTGATTATAAGGATAAAGATTTTCTTATGCCCATAGAAAAACTAAATGAGAATGTCAAGATAGTAAGCTCCCCTTGGTTGCAGGCAAgtttgaaaagttattttatttgacgccaaatgacacagctttacaa #### Cyp2c39_ID7786_5 --> 0 - 0 Original Alignment GTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCAGGAAGTCATCACAAAGTACTAAAAAACGTCAAATATATTAGAAGTTACCTGTTGGAGAAAATAAAAGAACACCAAGAATCACTGGATGTTACAAACCCTCGTGATTTTATTGATTATTACTTGATTAAACAAAAACAG aaatgcatttgggttaatattgtttcacccccatgtctttgtgccagtagGTCTGCAATAATTTTTCCTTGCTTATAGACTTTTGTCCAGGGAGCCATCAAAAAGTGCTAAAAAATGTCAAGTACATTAGAAGCTACCTGCTTGAGAAAATAGAGGAACATCAAGAATCACTGGATGTCACAAACCCCCACGGTTTTATTGACTACTACTTGATTAAACAGCAGCAAgtaagttgttaacattaaactatcctatgacataaaactattttacgtgc Alignment from CESAR GTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCAGGAAGTCATCACAAAGTACTAAAAAACGTCAAATATATTAGAAGTTACCTGTTGGAGAAAATAAAAGAACACCAAGAATCACTGGATGTTACAAACCCTCGTGATTTTATTGATTATTACTTGATTAAACAAAAACAG aaatgcatttgggttaatattgtttcacccccatgtctttgtgccagtagGTCTGCAATAATTTTTCCTTGCTTATAGACTTTTGTCCAGGGAGCCATCAAAAAGTGCTAAAAAATGTCAAGTACATTAGAAGCTACCTGCTTGAGAAAATAGAGGAACATCAAGAATCACTGGATGTCACAAACCCCCACGGTTTTATTGACTACTACTTGATTAAACAGCAGCAAgtaagttgttaacattaaactatcctatgacataaaactattttacgtgc Alignment from Spaln_aa2Genome GTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCAGGAAGTCATCACAAAGTACTAAAAAACGTCAAATATATTAGAAGTTACCTGTTGGAGAAAATAAAAGAACACCAAGAATCACTGGATGTTACAAACCCTCGTGATTTTATTGATTATTACTTGATTAAACAAAAACAG aaatgcatttgggttaatattgtttcacccccatgtctttgtgccagtagGTCTGCAATAATTTTTCCTTGCTTATAGACTTTTGTCCAGGGAGCCATCAAAAAGTGCTAAAAAATGTCAAGTACATTAGAAGCTACCTGCTTGAGAAAATAGAGGAACATCAAGAATCACTGGATGTCACAAACCCCCACGGTTTTATTGACTACTACTTGATTAAACAGCAGCAAgtaagttgttaacattaaactatcctatgacataaaactattttacgtgc Alignment from Spaln_nt2Genome GTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCAGGAAGTCATCACAAAGTACTAAAAAACGTCAAATATATTAGAAGTTACCTGTTGGAGAAAATAAAAGAACACCAAGAATCACTGGATGTTACAAACCCTCGTGATTTTATTGATTATTACTTGATTAAACAAAAACAG aaatgcatttgggttaatattgtttcacccccatgtctttgtgccagtagGTCTGCAATAATTTTTCCTTGCTTATAGACTTTTGTCCAGGGAGCCATCAAAAAGTGCTAAAAAATGTCAAGTACATTAGAAGCTACCTGCTTGAGAAAATAGAGGAACATCAAGAATCACTGGATGTCACAAACCCCCACGGTTTTATTGACTACTACTTGATTAAACAGCAGCAAgtaagttgttaacattaaactatcctatgacataaaactattttacgtgc Alignment from Pairagon GTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCAGGAAGTCATCACAAAGTACTAAAAAACGTCAAATATATTAGAAGTTACCTGTTGGAGAAAATAAAAGAACACCAAGAATCACTGGATGTTACAAACCCTCGTGATTTTATTGATTATTACTTGATTAAACAAAAACAG aaatgcatttgggttaatattgtttcacccccatgtctttgtgccagtagGTCTGCAATAATTTTTCCTTGCTTATAGACTTTTGTCCAGGGAGCCATCAAAAAGTGCTAAAAAATGTCAAGTACATTAGAAGCTACCTGCTTGAGAAAATAGAGGAACATCAAGAATCACTGGATGTCACAAACCCCCACGGTTTTATTGACTACTACTTGATTAAACAGCAGCAAgtaagttgttaacattaaactatcctatgacataaaactattttacgtgc Alignment from Exonerate_protein2genome GTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCAGGAAGTCATCACAAAGTACTAAAAAACGTCAAATATATTAGAAGTTACCTGTTGGAGAAAATAAAAGAACACCAAGAATCACTGGATGTTACAAACCCTCGTGATTTTATTGATTATTACTTGATTAAACAAAAACAG aaatgcatttgggttaatattgtttcacccccatgtctttgtgccagtagGTCTGCAATAATTTTTCCTTGCTTATAGACTTTTGTCCAGGGAGCCATCAAAAAGTGCTAAAAAATGTCAAGTACATTAGAAGCTACCTGCTTGAGAAAATAGAGGAACATCAAGAATCACTGGATGTCACAAACCCCCACGGTTTTATTGACTACTACTTGATTAAACAGCAGCAAgtaagttgttaacattaaactatcctatgacataaaactattttacgtgc Alignment from Exonerate_coding2genome GTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCAGGAAGTCATCACAAAGTACTAAAAAACGTCAAATATATTAGAAGTTACCTGTTGGAGAAAATAAAAGAACACCAAGAATCACTGGATGTTACAAACCCTCGTGATTTTATTGATTATTACTTGATTAAACAAAAACAG aaatgcatttgggttaatattgtttcacccccatgtctttgtgccagtagGTCTGCAATAATTTTTCCTTGCTTATAGACTTTTGTCCAGGGAGCCATCAAAAAGTGCTAAAAAATGTCAAGTACATTAGAAGCTACCTGCTTGAGAAAATAGAGGAACATCAAGAATCACTGGATGTCACAAACCCCCACGGTTTTATTGACTACTACTTGATTAAACAGCAGCAAgtaagttgttaacattaaactatcctatgacataaaactattttacgtgc Alignment from GeneWise GTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCAGGAAGTCATCACAAAGTACTAAAAAACGTCAAATATATTAGAAGTTACCTGTTGGAGAAAATAAAAGAACACCAAGAATCACTGGATGTTACAAACCCTCGTGATTTTATTGATTATTACTTGATTAAACAAAAACAG aaatgcatttgggttaatattgtttcacccccatgtctttgtgccagtagGTCTGCAATAATTTTTCCTTGCTTATAGACTTTTGTCCAGGGAGCCATCAAAAAGTGCTAAAAAATGTCAAGTACATTAGAAGCTACCTGCTTGAGAAAATAGAGGAACATCAAGAATCACTGGATGTCACAAACCCCCACGGTTTTATTGACTACTACTTGATTAAACAGCAGCAAgtaagttgttaacattaaactatcctatgacataaaactattttacgtgc #### Cyp2c40_ID7817_7 --> 2 - 0 Original Alignment ctAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG ctaggccgtacttctcacctagcaatattttgtttcctgttttttaatagctAAAGTCCCGGAAGAGATAGATAATGTGAATGGAAGACACCACAGCCCCTGTATGAAGGACAAGAACCATATGCCC---ACTAATGCCATGGTACATGAGGTCCAGCGATACAATGACCTTGGCCCAAATGGTGTAGTACATGAAGTTACCTGTGACACCAAGTTACGGACCTACCTCATCCCTAAGgtatgaatgctttctcttctcataaatatgatgacgaaagcaggtacttt Alignment from CESAR ctAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG ctaggccgtacttctcacctagcaatattttgtttcctgttttttaatagctAAAGTCCCGGAAGAGATAGATAATGTGAATGGAAGACACCACAGCCCCTGTATGAAGGACAAGAACCATATGCCC---ACTAATGCCATGGTACATGAGGTCCAGCGATACAATGACCTTGGCCCAAATGGTGTAGTACATGAAGTTACCTGTGACACCAAGTTACGGACCTACCTCATCCCTAAGgtatgaatgctttctcttctcataaatatgatgacgaaagcaggtacttt Alignment from Spaln_aa2Genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG ctaggccgtacttctcacctagcaatattttgtttcctgttttttaatagCTAAAGTCCCGGAAGAGATAGATAATGTGAATGGAAGACACCACAGCCCCTGTATGAAGGACAAGAACCATATGCCC---ACTAATGCCATGGTACATGAGGTCCAGCGATACAATGACCTTGGCCCAAATGGTGTAGTACATGAAGTTACCTGTGACACCAAGTTACGGACCTACCTCATCCCTAAGgtatgaatgctttctcttctcataaatatgatgacgaaagcaggtacttt Alignment from Spaln_nt2Genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG ctaggccgtacttctcacctagcaatattttgtttcctgttttttaatagCTAAAGTCCCGGAAGAGATAGATAATGTGAATGGAAGACACCACAGCCCCTGTATGAAGGACAAGAACCATATGCC---CACTAATGCCATGGTACATGAGGTCCAGCGATACAATGACCTTGGCCCAAATGGTGTAGTACATGAAGTTACCTGTGACACCAAGTTACGGACCTACCTCATCCCTAAGgtatgaatgctttctcttctcataaatatgatgacgaaagcaggtacttt Alignment from Pairagon CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG ctaggccgtacttctcacctagcaatattttgtttcctgttttttaatagCTAAAGTCCCGGAAGAGATAGATAATGTGAATGGAAGACACCACAGCCCCTGTATGAAGGACAAGAACCATATGCC---CACTAATGCCATGGTACATGAGGTCCAGCGATACAATGACCTTGGCCCAAATGGTGTAGTACATGAAGTTACCTGTGACACCAAGTTACGGACCTACCTCATCCCTAAGgtatgaatgctttctcttctcataaatatgatgacgaaagcaggtacttt Alignment from Exonerate_protein2genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG ctaggccgtacttctcacctagcaatattttgtttcctgttttttaatagCTAAAGTCCCGGAAGAGATAGATAATGTGAATGGAAGACACCACAGCCCCTGTATGAAGGACAAGAACCATATGCCC---ACTAATGCCATGGTACATGAGGTCCAGCGATACAATGACCTTGGCCCAAATGGTGTAGTACATGAAGTTACCTGTGACACCAAGTTACGGACCTACCTCATCCCTAAGgtatgaatgctttctcttctcataaatatgatgacgaaagcaggtacttt Alignment from Exonerate_coding2genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG ctaggccgtacttctcacctagcaatattttgtttcctgttttttaatagCTAAAGTCCCGGAAGAGATAGATAATGTGAATGGAAGACACCACAGCCCCTGTATGAAGGACAAGAACCATATGCCC---ACTAATGCCATGGTACATGAGGTCCAGCGATACAATGACCTTGGCCCAAATGGTGTAGTACATGAAGTTACCTGTGACACCAAGTTACGGACCTACCTCATCCCTAAGgtatgaatgctttctcttctcataaatatgatgacgaaagcaggtacttt Alignment from GeneWise CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG ctaggccgtacttctcacctagcaatattttgtttcctgttttttaatagCTAAAGTCCCGGAAGAGATAGATAATGTGAATGGAAGACACCACAGCCCCTGTATGAAGGACAAGAACCATATGCCC---ACTAATGCCATGGTACATGAGGTCCAGCGATACAATGACCTTGGCCCAAATGGTGTAGTACATGAAGTTACCTGTGACACCAAGTTACGGACCTACCTCATCCCTAAGgtatgaatgctttctcttctcataaatatgatgacgaaagcaggtacttt #### Cyp2c40_ID7822_2 --> 0 - 1 Original Alignment TTTTCTAAAACATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGGTATTACATGGTTATGAGGCAATTAAAGAAGCCCTCATTGACCATGGAGAAGAGTTCTCTGGAAGAGGAAGGATTCCGGTTTTTGACAAGGTTTCTACAGGAAAGg atggaggcaggatggcacctggatctcagacatgtcctgttcttctctagTTTTCCAAAACATATGGCCCTGTGTTCACTCTGTATTTTGGGTCACAGCCAATTGTTGTCTTACATGGTTATGAGGCAATTAAAGAAGCCCTCATTGACCATGGGGAAGAGTTCTCTGGAAGAGGGAGGATCCCAGTTTTTGACAGGGTGTCTACAGGAAAGggtaagtatgtgtacatggtgtgggtgcaagggtttgcagatataagctat Alignment from CESAR TTTTCTAAAACATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGGTATTACATGGTTATGAGGCAATTAAAGAAGCCCTCATTGACCATGGAGAAGAGTTCTCTGGAAGAGGAAGGATTCCGGTTTTTGACAAGGTTTCTACAGGAAAGg atggaggcaggatggcacctggatctcagacatgtcctgttcttctctagTTTTCCAAAACATATGGCCCTGTGTTCACTCTGTATTTTGGGTCACAGCCAATTGTTGTCTTACATGGTTATGAGGCAATTAAAGAAGCCCTCATTGACCATGGGGAAGAGTTCTCTGGAAGAGGGAGGATCCCAGTTTTTGACAGGGTGTCTACAGGAAAGggtaagtatgtgtacatggtgtgggtgcaagggtttgcagatataagctat Alignment from Spaln_aa2Genome TTTTCTAAAACATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGGTATTACATGGTTATGAGGCAATTAAAGAAGCCCTCATTGACCATGGAGAAGAGTTCTCTGGAAGAGGAAGGATTCCGGTTTTTGACAAGGTTTCTACAGGAAAGG atggaggcaggatggcacctggatctcagacatgtcctgttcttctctagTTTTCCAAAACATATGGCCCTGTGTTCACTCTGTATTTTGGGTCACAGCCAATTGTTGTCTTACATGGTTATGAGGCAATTAAAGAAGCCCTCATTGACCATGGGGAAGAGTTCTCTGGAAGAGGGAGGATCCCAGTTTTTGACAGGGTGTCTACAGGAAAGGgtaagtatgtgtacatggtgtgggtgcaagggtttgcagatataagctat Alignment from Spaln_nt2Genome TTTTCTAAAACATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGGTATTACATGGTTATGAGGCAATTAAAGAAGCCCTCATTGACCATGGAGAAGAGTTCTCTGGAAGAGGAAGGATTCCGGTTTTTGACAAGGTTTCTACAGGAAAGG atggaggcaggatggcacctggatctcagacatgtcctgttcttctctagTTTTCCAAAACATATGGCCCTGTGTTCACTCTGTATTTTGGGTCACAGCCAATTGTTGTCTTACATGGTTATGAGGCAATTAAAGAAGCCCTCATTGACCATGGGGAAGAGTTCTCTGGAAGAGGGAGGATCCCAGTTTTTGACAGGGTGTCTACAGGAAAGGgtaagtatgtgtacatggtgtgggtgcaagggtttgcagatataagctat Alignment from Pairagon TTTTCTAAAACATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGGTATTACATGGTTATGAGGCAATTAAAGAAGCCCTCATTGACCATGGAGAAGAGTTCTCTGGAAGAGGAAGGATTCCGGTTTTTGACAAGGTTTCTACAGGAAAGG atggaggcaggatggcacctggatctcagacatgtcctgttcttctctagTTTTCCAAAACATATGGCCCTGTGTTCACTCTGTATTTTGGGTCACAGCCAATTGTTGTCTTACATGGTTATGAGGCAATTAAAGAAGCCCTCATTGACCATGGGGAAGAGTTCTCTGGAAGAGGGAGGATCCCAGTTTTTGACAGGGTGTCTACAGGAAAGGgtaagtatgtgtacatggtgtgggtgcaagggtttgcagatataagctat Alignment from Exonerate_protein2genome TTTTCTAAAACATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGGTATTACATGGTTATGAGGCAATTAAAGAAGCCCTCATTGACCATGGAGAAGAGTTCTCTGGAAGAGGAAGGATTCCGGTTTTTGACAAGGTTTCTACAGGAAAGG atggaggcaggatggcacctggatctcagacatgtcctgttcttctctagTTTTCCAAAACATATGGCCCTGTGTTCACTCTGTATTTTGGGTCACAGCCAATTGTTGTCTTACATGGTTATGAGGCAATTAAAGAAGCCCTCATTGACCATGGGGAAGAGTTCTCTGGAAGAGGGAGGATCCCAGTTTTTGACAGGGTGTCTACAGGAAAGGgtaagtatgtgtacatggtgtgggtgcaagggtttgcagatataagctat Alignment from Exonerate_coding2genome TTTTCTAAAACATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGGTATTACATGGTTATGAGGCAATTAAAGAAGCCCTCATTGACCATGGAGAAGAGTTCTCTGGAAGAGGAAGGATTCCGGTTTTTGACAAGGTTTCTACAGGAAAGG atggaggcaggatggcacctggatctcagacatgtcctgttcttctctagTTTTCCAAAACATATGGCCCTGTGTTCACTCTGTATTTTGGGTCACAGCCAATTGTTGTCTTACATGGTTATGAGGCAATTAAAGAAGCCCTCATTGACCATGGGGAAGAGTTCTCTGGAAGAGGGAGGATCCCAGTTTTTGACAGGGTGTCTACAGGAAAGGgtaagtatgtgtacatggtgtgggtgcaagggtttgcagatataagctat Alignment from GeneWise TTTTCTAAAACATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGGTATTACATGGTTATGAGGCAATTAAAGAAGCCCTCATTGACCATGGAGAAGAGTTCTCTGGAAGAGGAAGGATTCCGGTTTTTGACAAGGTTTCTACAGGAAAGG atggaggcaggatggcacctggatctcagacatgtcctgttcttctctagTTTTCCAAAACATATGGCCCTGTGTTCACTCTGTATTTTGGGTCACAGCCAATTGTTGTCTTACATGGTTATGAGGCAATTAAAGAAGCCCTCATTGACCATGGGGAAGAGTTCTCTGGAAGAGGGAGGATCCCAGTTTTTGACAGGGTGTCTACAGGAAAGGgtaagtatgtgtacatggtgtgggtgcaagggtttgcagatataagctat #### Cyp2c44_ID8883_8 --> 0 - 1 Original Alignment GGCACCGCTGTGTTCCCGTTTCTGTCTTCCATCTTGTTGGATCAAAAGGAGTTTCCCAACCCAGAGAAGTTTGATCCAGGACACTTTCTGGATAAAAATGGCTGCTTCAAGAAAACAGACTACTTTGTTCCTTTCTCCCTCg agcaggttaaatgtgttgaagcacctcactcgcatttatgcttattttagGGTACCGCTGTGTTCCCATTCCAGTCTTCCATCTTGTTGGATCAAAAAGAATTCCCCAATACAGAGAGATTTGATCCG---CACTTTCTAGATAAAAATGGTTGTCTCAAGAAAACAGATTACTTAGTTCCCTTCACCCTTggtaagcagattatagatgtgatcagagcagtaacaatccttggatagagc Alignment from CESAR GGCACCGCTGTGTTCCCGTTTCTGTCTTCCATCTTGTTGGATCAAAAGGAGTTTCCCAACCCAGAGAAGTTTGATCCAGGACACTTTCTGGATAAAAATGGCTGCTTCAAGAAAACAGACTACTTTGTTCCTTTCTCCCTCg agcaggttaaatgtgttgaagcacctcactcgcatttatgcttattttagGGTACCGCTGTGTTCCCATTCCAGTCTTCCATCTTGTTGGATCAAAAAGAATTCCCCAATACAGAGAGATTTGATCCG---CACTTTCTAGATAAAAATGGTTGTCTCAAGAAAACAGATTACTTAGTTCCCTTCACCCTTggtaagcagattatagatgtgatcagagcagtaacaatccttggatagagc Alignment from Spaln_aa2Genome GGCACCGCTGTGTTCCCGTTTCTGTCTTCCATCTTGTTGGATCAAAAGGAGTTTCCCAACCCAGAGAAGTTTGATCCAGGACACTTTCTGGATAAAAATGGCTGCTTCAAGAAAACAGACTACTTTGTTCCTTTCTCCCTCG agcaggttaaatgtgttgaagcacctcactcgcatttatgcttattttagGGTACCGCTGTGTTCCCATTCCAGTCTTCCATCTTGTTGGATCAAAAAGAATTCCCCAATACAGAGAGATTTGATCCG---CACTTTCTAGATAAAAATGGTTGTCTCAAGAAAACAGATTACTTAGTTCCCTTCACCCTTGgtaagcagattatagatgtgatcagagcagtaacaatccttggatagagc Alignment from Spaln_nt2Genome GGCACCGCTGTGTTCCCGTTTCTGTCTTCCATCTTGTTGGATCAAAAGGAGTTTCCCAACCCAGAGAAGTTTGATCCAGGACACTTTCTGGATAAAAATGGCTGCTTCAAGAAAACAGACTACTTTGTTCCTTTCTCCCTCG agcaggttaaatgtgttgaagcacctcactcgcatttatgcttattttagGGTACCGCTGTGTTCCCATTCCAGTCTTCCATCTTGTTGGATCAAAAAGAATTCCCCAATACAGAGAGATTTGATCC---GCACTTTCTAGATAAAAATGGTTGTCTCAAGAAAACAGATTACTTAGTTCCCTTCACCCTTGgtaagcagattatagatgtgatcagagcagtaacaatccttggatagagc Alignment from Pairagon GGCACCGCTGTGTTCCCGTTTCTGTCTTCCATCTTGTTGGATCAAAAGGAGTTTCCCAACCCAGAGAAGTTTGATCCAGGACACTTTCTGGATAAAAATGGCTGCTTCAAGAAAACAGACTACTTTGTTCCTTTCTCCCTCG agcaggttaaatgtgttgaagcacctcactcgcatttatgcttattttagGGTACCGCTGTGTTCCCATTCCAGTCTTCCATCTTGTTGGATCAAAAAGAATTCCCCAATACAGAGAGATTTGATCC---GCACTTTCTAGATAAAAATGGTTGTCTCAAGAAAACAGATTACTTAGTTCCCTTCACCCTTGgtaagcagattatagatgtgatcagagcagtaacaatccttggatagagc Alignment from Exonerate_protein2genome GGCACCGCTGTGTTCCCGTTTCTGTCTTCCATCTTGTTGGATCAAAAGGAGTTTCCCAACCCAGAGAAGTTTGATCCAGGACACTTTCTGGATAAAAATGGCTGCTTCAAGAAAACAGACTACTTTGTTCCTTTCTCCCTCG agcaggttaaatgtgttgaagcacctcactcgcatttatgcttattttagGGTACCGCTGTGTTCCCATTCCAGTCTTCCATCTTGTTGGATCAAAAAGAATTCCCCAATACAGAGAGATTTGATCCG---CACTTTCTAGATAAAAATGGTTGTCTCAAGAAAACAGATTACTTAGTTCCCTTCACCCTTGgtaagcagattatagatgtgatcagagcagtaacaatccttggatagagc Alignment from Exonerate_coding2genome GGCACCGCTGTGTTCCCGTTTCTGTCTTCCATCTTGTTGGATCAAAAGGAGTTTCCCAACCCAGAGAAGTTTGATCCAGGACACTTTCTGGATAAAAATGGCTGCTTCAAGAAAACAGACTACTTTGTTCCTTTCTCCCTCG agcaggttaaatgtgttgaagcacctcactcgcatttatgcttattttagGGTACCGCTGTGTTCCCATTCCAGTCTTCCATCTTGTTGGATCAAAAAGAATTCCCCAATACAGAGAGATTTGATCCG---CACTTTCTAGATAAAAATGGTTGTCTCAAGAAAACAGATTACTTAGTTCCCTTCACCCTTGgtaagcagattatagatgtgatcagagcagtaacaatccttggatagagc Alignment from GeneWise GGCACCGCTGTGTTCCCGTTTCTGTCTTCCATCTTGTTGGATCAAAAGGAGTTTCCCAACCCAGAGAAGTTTGATCCAGGACACTTTCTGGATAAAAATGGCTGCTTCAAGAAAACAGACTACTTTGTTCCTTTCTCCCTCG agcaggttaaatgtgttgaagcacctcactcgcatttatgcttattttagGGTACCGCTGTGTTCCCATTCCAGTCTTCCATCTTGTTGGATCAAAAAGAATTCCCCAATACAGAGAGATTTGATCCG---CACTTTCTAGATAAAAATGGTTGTCTCAAGAAAACAGATTACTTAGTTCCCTTCACCCTTGgtaagcagattatagatgtgatcagagcagtaacaatccttggatagagc #### Cyp2c44_ID8884_7 --> 2 - 0 Original Alignment ccAAAGTTCATGAAGAACTTGATCGTGTGATTGGACGCCACCAACCCCCCAGCATGAAGGACAAGATGAAGCTGCCCTATACAGATGCCGTGCTGCATGAGATTCAAAGATACATCACTCTCCTTCCTTCTAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTCAGACAC---TATGTCATCCCCAAG ctggggttcccaagcatgcttaccaagactgcttcccttcccctttgcagcaAAAGTTCATGAAGAACTTGACTGTGTGATTGGATGCCACCAACCCCCTAGCATGAAGGATAAGATGAGGTTGCCCTATATGGATGCTGTGCTTCATGAGATTCAAAGGTACAGTACTCTTCTTCCATCTAGTCTGCCCCATCCTGTGGTCCAGGACACAAAATTTAGGCAGCATTATGTCATTCCCAAAgtatgcccaactcacaaagacataggaagagaaaagaattgtcatggatt Alignment from CESAR ccAAAGTTCATGAAGAACTTGATCGTGTGATTGGACGCCACCAACCCCCCAGCATGAAGGACAAGATGAAGCTGCCCTATACAGATGCCGTGCTGCATGAGATTCAAAGATACATCACTCTCCTTCCTTCTAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTCAGA---CACTATGTCATCCCCAAG ctggggttcccaagcatgcttaccaagactgcttcccttcccctttgcagcaAAAGTTCATGAAGAACTTGACTGTGTGATTGGATGCCACCAACCCCCTAGCATGAAGGATAAGATGAGGTTGCCCTATATGGATGCTGTGCTTCATGAGATTCAAAGGTACAGTACTCTTCTTCCATCTAGTCTGCCCCATCCTGTGGTCCAGGACACAAAATTTAGGCAGCATTATGTCATTCCCAAAgtatgcccaactcacaaagacataggaagagaaaagaattgtcatggatt Alignment from Spaln_aa2Genome CCAAAGTTCATGAAGAACTTGATCGTGTGATTGGACGCCACCAACCCCCCAGCATGAAGGACAAGATGAAGCTGCCCTATACAGATGCCGTGCTGCATGAGATTCAAAGATACATCACTCTCCTTCCTTCTAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTCAGA---CACTATGTCATCCCCAAG ctggggttcccaagcatgcttaccaagactgcttcccttcccctttgcagCAAAAGTTCATGAAGAACTTGACTGTGTGATTGGATGCCACCAACCCCCTAGCATGAAGGATAAGATGAGGTTGCCCTATATGGATGCTGTGCTTCATGAGATTCAAAGGTACAGTACTCTTCTTCCATCTAGTCTGCCCCATCCTGTGGTCCAGGACACAAAATTTAGGCAGCATTATGTCATTCCCAAAgtatgcccaactcacaaagacataggaagagaaaagaattgtcatggatt Alignment from Spaln_nt2Genome CCAAAGTTCATGAAGAACTTGATCGTGTGATTGGACGCCACCAACCCCCCAGCATGAAGGACAAGATGAAGCTGCCCTATACAGATGCCGTGCTGCATGAGATTCAAAGATACATCACTCTCCTTCCTTCTAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTCAGACAC---TATGTCATCCCCAAG ctggggttcccaagcatgcttaccaagactgcttcccttcccctttgcagCAAAAGTTCATGAAGAACTTGACTGTGTGATTGGATGCCACCAACCCCCTAGCATGAAGGATAAGATGAGGTTGCCCTATATGGATGCTGTGCTTCATGAGATTCAAAGGTACAGTACTCTTCTTCCATCTAGTCTGCCCCATCCTGTGGTCCAGGACACAAAATTTAGGCAGCATTATGTCATTCCCAAAgtatgcccaactcacaaagacataggaagagaaaagaattgtcatggatt Alignment from Pairagon CCAAAGTTCATGAAGAACTTGATCGTGTGATTGGACGCCACCAACCCCCCAGCATGAAGGACAAGATGAAGCTGCCCTATACAGATGCCGTGCTGCATGAGATTCAAAGATACATCACTCTCCTTCCTTCTAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTCAG---ACACTATGTCATCCCCAAG ctggggttcccaagcatgcttaccaagactgcttcccttcccctttgcagCAAAAGTTCATGAAGAACTTGACTGTGTGATTGGATGCCACCAACCCCCTAGCATGAAGGATAAGATGAGGTTGCCCTATATGGATGCTGTGCTTCATGAGATTCAAAGGTACAGTACTCTTCTTCCATCTAGTCTGCCCCATCCTGTGGTCCAGGACACAAAATTTAGGCAGCATTATGTCATTCCCAAAgtatgcccaactcacaaagacataggaagagaaaagaattgtcatggatt Alignment from Exonerate_protein2genome CCAAAGTTCATGAAGAACTTGATCGTGTGATTGGACGCCACCAACCCCCCAGCATGAAGGACAAGATGAAGCTGCCCTATACAGATGCCGTGCTGCATGAGATTCAAAGATACATCACTCTCCTTCCTTCTAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTCAGA---CACTATGTCATCCCCAAG ctggggttcccaagcatgcttaccaagactgcttcccttcccctttgcagCAAAAGTTCATGAAGAACTTGACTGTGTGATTGGATGCCACCAACCCCCTAGCATGAAGGATAAGATGAGGTTGCCCTATATGGATGCTGTGCTTCATGAGATTCAAAGGTACAGTACTCTTCTTCCATCTAGTCTGCCCCATCCTGTGGTCCAGGACACAAAATTTAGGCAGCATTATGTCATTCCCAAAgtatgcccaactcacaaagacataggaagagaaaagaattgtcatggatt Alignment from Exonerate_coding2genome CCAAAGTTCATGAAGAACTTGATCGTGTGATTGGACGCCACCAACCCCCCAGCATGAAGGACAAGATGAAGCTGCCCTATACAGATGCCGTGCTGCATGAGATTCAAAGATACATCACTCTCCTTCCTTCTAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTCAGA---CACTATGTCATCCCCAAG ctggggttcccaagcatgcttaccaagactgcttcccttcccctttgcagCAAAAGTTCATGAAGAACTTGACTGTGTGATTGGATGCCACCAACCCCCTAGCATGAAGGATAAGATGAGGTTGCCCTATATGGATGCTGTGCTTCATGAGATTCAAAGGTACAGTACTCTTCTTCCATCTAGTCTGCCCCATCCTGTGGTCCAGGACACAAAATTTAGGCAGCATTATGTCATTCCCAAAgtatgcccaactcacaaagacataggaagagaaaagaattgtcatggatt Alignment from GeneWise CCAAAGTTCATGAAGAACTTGATCGTGTGATTGGACGCCACCAACCCCCCAGCATGAAGGACAAGATGAAGCTGCCCTATACAGATGCCGTGCTGCATGAGATTCAAAGATACATCACTCTCCTTCCTTCTAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTCAGA---CACTATGTCATCCCCAAG ctggggttcccaagcatgcttaccaagactgcttcccttcccctttgcagCAAAAGTTCATGAAGAACTTGACTGTGTGATTGGATGCCACCAACCCCCTAGCATGAAGGATAAGATGAGGTTGCCCTATATGGATGCTGTGCTTCATGAGATTCAAAGGTACAGTACTCTTCTTCCATCTAGTCTGCCCCATCCTGTGGTCCAGGACACAAAATTTAGGCAGCATTATGTCATTCCCAAAgtatgcccaactcacaaagacataggaagagaaaagaattgtcatggatt #### Cyp2c44_ID8885_6 --> 0 - 1 Original Alignment GAGAAACACAACCTGAAATCTGATTTTAATCTGGAGAATTTGGCCATCTGTGGGTCTAACTTGTTTACGGCAGGCACAGAGACAACCAGCACCACCCTGAGATTCGGGCTTCTGCTCCTTGTCAAGCATCCAGAGGTGCAAg ccagacatttgagattgaaaagctattatatttgtaaatgctttccccagGAGAAACACAACCTAAAATCTGACCTTAATTTGGAAAATTTGGCCATTTGTGGGTCCAACTTGTTAACAGCAGGCACAGAGACTACTAGTACCACACTGAGATTCGGGCTTCTGCTGCTAGTCCAGCACCCACAGGTGCAAggtcagtaccatgcgaagggggagaggagttgctagtaatcatggagtata Alignment from CESAR GAGAAACACAACCTGAAATCTGATTTTAATCTGGAGAATTTGGCCATCTGTGGGTCTAACTTGTTTACGGCAGGCACAGAGACAACCAGCACCACCCTGAGATTCGGGCTTCTGCTCCTTGTCAAGCATCCAGAGGTGCAAg ccagacatttgagattgaaaagctattatatttgtaaatgctttccccagGAGAAACACAACCTAAAATCTGACCTTAATTTGGAAAATTTGGCCATTTGTGGGTCCAACTTGTTAACAGCAGGCACAGAGACTACTAGTACCACACTGAGATTCGGGCTTCTGCTGCTAGTCCAGCACCCACAGGTGCAAggtcagtaccatgcgaagggggagaggagttgctagtaatcatggagtata Alignment from Spaln_aa2Genome GAGAAACACAACCTGAAATCTGATTTTAATCTGGAGAATTTGGCCATCTGTGGGTCTAACTTGTTTACGGCAGGCACAGAGACAACCAGCACCACCCTGAGATTCGGGCTTCTGCTCCTTGTCAAGCATCCAGAGGTGCAAG ccagacatttgagattgaaaagctattatatttgtaaatgctttccccagGAGAAACACAACCTAAAATCTGACCTTAATTTGGAAAATTTGGCCATTTGTGGGTCCAACTTGTTAACAGCAGGCACAGAGACTACTAGTACCACACTGAGATTCGGGCTTCTGCTGCTAGTCCAGCACCCACAGGTGCAAGgtcagtaccatgcgaagggggagaggagttgctagtaatcatggagtata Alignment from Spaln_nt2Genome GAGAAACACAACCTGAAATCTGATTTTAATCTGGAGAATTTGGCCATCTGTGGGTCTAACTTGTTTACGGCAGGCACAGAGACAACCAGCACCACCCTGAGATTCGGGCTTCTGCTCCTTGTCAAGCATCCAGAGGTGCAAG ccagacatttgagattgaaaagctattatatttgtaaatgctttccccagGAGAAACACAACCTAAAATCTGACCTTAATTTGGAAAATTTGGCCATTTGTGGGTCCAACTTGTTAACAGCAGGCACAGAGACTACTAGTACCACACTGAGATTCGGGCTTCTGCTGCTAGTCCAGCACCCACAGGTGCAAGgtcagtaccatgcgaagggggagaggagttgctagtaatcatggagtata Alignment from Pairagon GAGAAACACAACCTGAAATCTGATTTTAATCTGGAGAATTTGGCCATCTGTGGGTCTAACTTGTTTACGGCAGGCACAGAGACAACCAGCACCACCCTGAGATTCGGGCTTCTGCTCCTTGTCAAGCATCCAGAGGTGCAAG ccagacatttgagattgaaaagctattatatttgtaaatgctttccccagGAGAAACACAACCTAAAATCTGACCTTAATTTGGAAAATTTGGCCATTTGTGGGTCCAACTTGTTAACAGCAGGCACAGAGACTACTAGTACCACACTGAGATTCGGGCTTCTGCTGCTAGTCCAGCACCCACAGGTGCAAGgtcagtaccatgcgaagggggagaggagttgctagtaatcatggagtata Alignment from Exonerate_protein2genome GAGAAACACAACCTGAAATCTGATTTTAATCTGGAGAATTTGGCCATCTGTGGGTCTAACTTGTTTACGGCAGGCACAGAGACAACCAGCACCACCCTGAGATTCGGGCTTCTGCTCCTTGTCAAGCATCCAGAGGTGCAAG ccagacatttgagattgaaaagctattatatttgtaaatgctttccccagGAGAAACACAACCTAAAATCTGACCTTAATTTGGAAAATTTGGCCATTTGTGGGTCCAACTTGTTAACAGCAGGCACAGAGACTACTAGTACCACACTGAGATTCGGGCTTCTGCTGCTAGTCCAGCACCCACAGGTGCAAGgtcagtaccatgcgaagggggagaggagttgctagtaatcatggagtata Alignment from Exonerate_coding2genome GAGAAACACAACCTGAAATCTGATTTTAATCTGGAGAATTTGGCCATCTGTGGGTCTAACTTGTTTACGGCAGGCACAGAGACAACCAGCACCACCCTGAGATTCGGGCTTCTGCTCCTTGTCAAGCATCCAGAGGTGCAAG ccagacatttgagattgaaaagctattatatttgtaaatgctttccccagGAGAAACACAACCTAAAATCTGACCTTAATTTGGAAAATTTGGCCATTTGTGGGTCCAACTTGTTAACAGCAGGCACAGAGACTACTAGTACCACACTGAGATTCGGGCTTCTGCTGCTAGTCCAGCACCCACAGGTGCAAGgtcagtaccatgcgaagggggagaggagttgctagtaatcatggagtata Alignment from GeneWise GAGAAACACAACCTGAAATCTGATTTTAATCTGGAGAATTTGGCCATCTGTGGGTCTAACTTGTTTACGGCAGGCACAGAGACAACCAGCACCACCCTGAGATTCGGGCTTCTGCTCCTTGTCAAGCATCCAGAGGTGCAAG ccagacatttgagattgaaaagctattatatttgtaaatgctttccccagGAGAAACACAACCTAAAATCTGACCTTAATTTGGAAAATTTGGCCATTTGTGGGTCCAACTTGTTAACAGCAGGCACAGAGACTACTAGTACCACACTGAGATTCGGGCTTCTGCTGCTAGTCCAGCACCCACAGGTGCAAGgtcagtaccatgcgaagggggagaggagttgctagtaatcatggagtata #### Cyp2c50_ID7862_3 --> 2 - 1 Original Alignment gcATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg agtgaaagaatgtgtgagtccatcccaggtggcttttttctttgtcttagggATTATATTCAGTAAGGGAAATGTGTGGAAAAATATAAGGCACTTCTCACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGCCTTCAAGAGGAAGCCCGTTGGCCTGTTGAGGAACTTAAGAAGACCAATggtgcgtcaaagtgcagacccagaacctagtgtgattttaatcaagttttt Alignment from CESAR gcATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg agtgaaagaatgtgtgagtccatcccaggtggcttttttctttgtcttagggATTATATTCAGTAAGGGAAATGTGTGGAAAAATATAAGGCACTTCTCACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGCCTTCAAGAGGAAGCCCGTTGGCCTGTTGAGGAACTTAAGAAGACCAATggtgcgtcaaagtgcagacccagaacctagtgtgattttaatcaagttttt Alignment from Spaln_aa2Genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG agtgaaagaatgtgtgagtccatcccaggtggcttttttctttgtcttagGGATTATATTCAGTAAGGGAAATGTGTGGAAAAATATAAGGCACTTCTCACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGCCTTCAAGAGGAAGCCCGTTGGCCTGTTGAGGAACTTAAGAAGACCAATGgtgcgtcaaagtgcagacccagaacctagtgtgattttaatcaagttttt Alignment from Spaln_nt2Genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG agtgaaagaatgtgtgagtccatcccaggtggcttttttctttgtcttagGGATTATATTCAGTAAGGGAAATGTGTGGAAAAATATAAGGCACTTCTCACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGCCTTCAAGAGGAAGCCCGTTGGCCTGTTGAGGAACTTAAGAAGACCAATGgtgcgtcaaagtgcagacccagaacctagtgtgattttaatcaagttttt Alignment from Pairagon GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG agtgaaagaatgtgtgagtccatcccaggtggcttttttctttgtcttagGGATTATATTCAGTAAGGGAAATGTGTGGAAAAATATAAGGCACTTCTCACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGCCTTCAAGAGGAAGCCCGTTGGCCTGTTGAGGAACTTAAGAAGACCAATGgtgcgtcaaagtgcagacccagaacctagtgtgattttaatcaagttttt Alignment from Exonerate_protein2genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG agtgaaagaatgtgtgagtccatcccaggtggcttttttctttgtcttagGGATTATATTCAGTAAGGGAAATGTGTGGAAAAATATAAGGCACTTCTCACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGCCTTCAAGAGGAAGCCCGTTGGCCTGTTGAGGAACTTAAGAAGACCAATGgtgcgtcaaagtgcagacccagaacctagtgtgattttaatcaagttttt Alignment from Exonerate_coding2genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG agtgaaagaatgtgtgagtccatcccaggtggcttttttctttgtcttagGGATTATATTCAGTAAGGGAAATGTGTGGAAAAATATAAGGCACTTCTCACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGCCTTCAAGAGGAAGCCCGTTGGCCTGTTGAGGAACTTAAGAAGACCAATGgtgcgtcaaagtgcagacccagaacctagtgtgattttaatcaagttttt Alignment from GeneWise -------------------------------------------------GGCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG AGTGAAAGAATGTGTGAGTCCATCCCAGGTGGCTTTTTTCTTTGTCTTAGGGATTATATTCAGTAAGGGAAATGTGTGGAAAAATATAAGGCACTTCTCACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGCCTTCAAGAGGAAGCCCGTTGGCCTGTTGAGGAACTTAAGAAGACCAATGgtgcgtcaaagtgcagacccagaacctagtgtgattttaatcaagttttt #### Cyp2c50_ID7863_4 --> 2 - 0 Original Alignment gcTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAACTGAATGAAATAACCAAGATAATGAGCACCCCTTGGTTGCAG agtggatttgtgtaagttactatttgtcccatctcttcacccttattcaggcTCACCCTGTGATCCTGCCTTCATCTTGGGTTGTGCTCCCTGCAATGATATCCGCTCGATTATTTTTGATGATCGGTTTGAGTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAGTTAAATAAAATATCTAAAATAATGAGCATGCCATGGCTC---gtatggtcatggatttggaacgacacccatgcaaagcctgttagccctta Alignment from CESAR gcTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAACTGAATGAAATAACCAAGATAATGAGCACCCCTTGGTTGCAG agtggatttgtgtaagttactatttgtcccatctcttcacccttattcaggcTCACCCTGTGATCCTGCCTTCATCTTGGGTTGTGCTCCCTGCAATGATATCCGCTCGATTATTTTTGATGATCGGTTTGAGTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAGTTAAATAAAATATCTAAAATAATGAGCATGCCATGGCTC---gtatggtcatggatttggaacgacacccatgcaaagcctgttagccc Alignment from Spaln_aa2Genome GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAACTGAATGAAATAACCAAGATAATGAGCACCCCTTGGTTG agtggatttgtgtaagttactatttgtcccatctcttcacccttattcagGCTCACCCTGTGATCCTGCCTTCATCTTGGGTTGTGCTCCCTGCAATGATATCCGCTCGATTATTTTTGATGATCGGTTTGAGTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAGTTAAATAAAATATCTAAAATAATGAGCATGCCATGGCTCgtatggtcatggatttggaacgacacccatgcaaagcctgttagccctta Alignment from Spaln_nt2Genome GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAACTGAATGAAATAACCAAGATAATGAGCACCCCTTGGTTG agtggatttgtgtaagttactatttgtcccatctcttcacccttattcagGCTCACCCTGTGATCCTGCCTTCATCTTGGGTTGTGCTCCCTGCAATGATATCCGCTCGATTATTTTTGATGATCGGTTTGAGTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAGTTAAATAAAATATCTAAAATAATGAGCATGCCATGGCTCgtatggtcatggatttggaacgacacccatgcaaagcctgttagccctta Alignment from Pairagon GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAACTGAATGAAATAACCAAGATAATGAGCACCCCTTGGTTG agtggatttgtgtaagttactatttgtcccatctcttcacccttattcagGCTCACCCTGTGATCCTGCCTTCATCTTGGGTTGTGCTCCCTGCAATGATATCCGCTCGATTATTTTTGATGATCGGTTTGAGTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAGTTAAATAAAATATCTAAAATAATGAGCATGCCATGGCTCgtatggtcatggatttggaacgacacccatgcaaagcctgttagccctta Alignment from Exonerate_protein2genome GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAACTGAATGAAATAACCAAGATAATGAGCACCCCTTGGTTGCAG agtggatttgtgtaagttactatttgtcccatctcttcacccttattcagGCTCACCCTGTGATCCTGCCTTCATCTTGGGTTGTGCTCCCTGCAATGATATCCGCTCGATTATTTTTGATGATCGGTTTGAGTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAGTTAAATAAAATATCTAAAATAATGAGCATGCCATGGCTC---gtatggtcatggatttggaacgacacccatgcaaagcctgttagccc Alignment from Exonerate_coding2genome GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAACTGAATGAAATAACCAAGATAATGAGCACCCCTTGGTTGCAG agtggatttgtgtaagttactatttgtcccatctcttcacccttattcagGCTCACCCTGTGATCCTGCCTTCATCTTGGGTTGTGCTCCCTGCAATGATATCCGCTCGATTATTTTTGATGATCGGTTTGAGTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAGTTAAATAAAATATCTAAAATAATGAGCATGCCATGGCTC---gtatggtcatggatttggaacgacacccatgcaaagcctgttagccc Alignment from GeneWise GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAACTGAATGAAATAACCAAGATAATGAGCACCCCTTGGTTG agtggatttgtgtaagttactatttgtcccatctcttcacccttattcagGCTCACCCTGTGATCCTGCCTTCATCTTGGGTTGTGCTCCCTGCAATGATATCCGCTCGATTATTTTTGATGATCGGTTTGAGTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAGTTAAATAAAATATCTAAAATAATGAGCATGCCATGGCTCgtatggtcatggatttggaacgacacccatgcaaagcctgttagccctta #### Cyp2c55_ID7725_2 --> 0 - 1 Original Alignment TTCTCAAAAGTCTATGGCCCCGTGTTCACTCTGTACTTTGGTTCAAAGCCTACTGTGGTGGTACATGGATATGAAGCAGTAAAGGAAGCTCTGGATGACCTTGGAGAGGAGTTTTCTGGGAGGGGTAGTTTTCAAATTTTTGAAAGAATAAATAATGATCTGg ttggcctaaaacctctttatggatttcaaggacttcctttctcgtttcagTTATCTAAGGTCTATGGGCCAGTATTCACTTTGTACTTCGGTTCAAAGCCTACTGTGGTGGTACATGGATATGAAGCAGTGAAAGAAGCTCTGGATGATCTTGGAGAGGAGTTCTCTGGGAGAGGAAGTTTTCAAATTTTCGACAGGATTAATAATGATCTTggtaggcgcgcatccatagaaatatacgtttacccatgctggggttgaaca Alignment from CESAR TTCTCAAAAGTCTATGGCCCCGTGTTCACTCTGTACTTTGGTTCAAAGCCTACTGTGGTGGTACATGGATATGAAGCAGTAAAGGAAGCTCTGGATGACCTTGGAGAGGAGTTTTCTGGGAGGGGTAGTTTTCAAATTTTTGAAAGAATAAATAATGATCTGg ttggcctaaaacctctttatggatttcaaggacttcctttctcgtttcagTTATCTAAGGTCTATGGGCCAGTATTCACTTTGTACTTCGGTTCAAAGCCTACTGTGGTGGTACATGGATATGAAGCAGTGAAAGAAGCTCTGGATGATCTTGGAGAGGAGTTCTCTGGGAGAGGAAGTTTTCAAATTTTCGACAGGATTAATAATGATCTTggtaggcgcgcatccatagaaatatacgtttacccatgctggggttgaaca Alignment from Spaln_aa2Genome TTCTCAAAAGTCTATGGCCCCGTGTTCACTCTGTACTTTGGTTCAAAGCCTACTGTGGTGGTACATGGATATGAAGCAGTAAAGGAAGCTCTGGATGACCTTGGAGAGGAGTTTTCTGGGAGGGGTAGTTTTCAAATTTTTGAAAGAATAAATAATGATCTGG ttggcctaaaacctctttatggatttcaaggacttcctttctcgtttcagTTATCTAAGGTCTATGGGCCAGTATTCACTTTGTACTTCGGTTCAAAGCCTACTGTGGTGGTACATGGATATGAAGCAGTGAAAGAAGCTCTGGATGATCTTGGAGAGGAGTTCTCTGGGAGAGGAAGTTTTCAAATTTTCGACAGGATTAATAATGATCTTGgtaggcgcgcatccatagaaatatacgtttacccatgctggggttgaaca Alignment from Spaln_nt2Genome TTCTCAAAAGTCTATGGCCCCGTGTTCACTCTGTACTTTGGTTCAAAGCCTACTGTGGTGGTACATGGATATGAAGCAGTAAAGGAAGCTCTGGATGACCTTGGAGAGGAGTTTTCTGGGAGGGGTAGTTTTCAAATTTTTGAAAGAATAAATAATGATCTGG ttggcctaaaacctctttatggatttcaaggacttcctttctcgtttcagTTATCTAAGGTCTATGGGCCAGTATTCACTTTGTACTTCGGTTCAAAGCCTACTGTGGTGGTACATGGATATGAAGCAGTGAAAGAAGCTCTGGATGATCTTGGAGAGGAGTTCTCTGGGAGAGGAAGTTTTCAAATTTTCGACAGGATTAATAATGATCTTGgtaggcgcgcatccatagaaatatacgtttacccatgctggggttgaaca Alignment from Pairagon TTCTCAAAAGTCTATGGCCCCGTGTTCACTCTGTACTTTGGTTCAAAGCCTACTGTGGTGGTACATGGATATGAAGCAGTAAAGGAAGCTCTGGATGACCTTGGAGAGGAGTTTTCTGGGAGGGGTAGTTTTCAAATTTTTGAAAGAATAAATAATGATCTGG ttggcctaaaacctctttatggatttcaaggacttcctttctcgtttcagTTATCTAAGGTCTATGGGCCAGTATTCACTTTGTACTTCGGTTCAAAGCCTACTGTGGTGGTACATGGATATGAAGCAGTGAAAGAAGCTCTGGATGATCTTGGAGAGGAGTTCTCTGGGAGAGGAAGTTTTCAAATTTTCGACAGGATTAATAATGATCTTGgtaggcgcgcatccatagaaatatacgtttacccatgctggggttgaaca Alignment from Exonerate_protein2genome TTCTCAAAAGTCTATGGCCCCGTGTTCACTCTGTACTTTGGTTCAAAGCCTACTGTGGTGGTACATGGATATGAAGCAGTAAAGGAAGCTCTGGATGACCTTGGAGAGGAGTTTTCTGGGAGGGGTAGTTTTCAAATTTTTGAAAGAATAAATAATGATCTGG ttggcctaaaacctctttatggatttcaaggacttcctttctcgtttcagTTATCTAAGGTCTATGGGCCAGTATTCACTTTGTACTTCGGTTCAAAGCCTACTGTGGTGGTACATGGATATGAAGCAGTGAAAGAAGCTCTGGATGATCTTGGAGAGGAGTTCTCTGGGAGAGGAAGTTTTCAAATTTTCGACAGGATTAATAATGATCTTGgtaggcgcgcatccatagaaatatacgtttacccatgctggggttgaaca Alignment from Exonerate_coding2genome TTCTCAAAAGTCTATGGCCCCGTGTTCACTCTGTACTTTGGTTCAAAGCCTACTGTGGTGGTACATGGATATGAAGCAGTAAAGGAAGCTCTGGATGACCTTGGAGAGGAGTTTTCTGGGAGGGGTAGTTTTCAAATTTTTGAAAGAATAAATAATGATCTGG ttggcctaaaacctctttatggatttcaaggacttcctttctcgtttcagTTATCTAAGGTCTATGGGCCAGTATTCACTTTGTACTTCGGTTCAAAGCCTACTGTGGTGGTACATGGATATGAAGCAGTGAAAGAAGCTCTGGATGATCTTGGAGAGGAGTTCTCTGGGAGAGGAAGTTTTCAAATTTTCGACAGGATTAATAATGATCTTGgtaggcgcgcatccatagaaatatacgtttacccatgctggggttgaaca Alignment from GeneWise TTCTCAAAAGTCTATGGCCCCGTGTTCACTCTGTACTTTGGTTCAAAGCCTACTGTGGTGGTACATGGATATGAAGCAGTAAAGGAAGCTCTGGATGACCTTGGAGAGGAGTTTTCTGGGAGGGGTAGTTTTCAAATTTTTGAAAGAATAAATAATGATCTGG ttggcctaaaacctctttatggatttcaaggacttcctttctcgtttcagTTATCTAAGGTCTATGGGCCAGTATTCACTTTGTACTTCGGTTCAAAGCCTACTGTGGTGGTACATGGATATGAAGCAGTGAAAGAAGCTCTGGATGATCTTGGAGAGGAGTTCTCTGGGAGAGGAAGTTTTCAAATTTTCGACAGGATTAATAATGATCTTGgtaggcgcgcatccatagaaatatacgtttacccatgctggggttgaaca #### Cyp2c55_ID7728_5 --> 0 - 0 Original Alignment GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG attttgaaaaattcagtgagtggtgcccacaaatgcattgtcttcaacagGTCTACAATGCTCTGCCTACCCTCATTAATTACCTCCCAGGAAGTCACAACAAAGTAATAAAAAACTTTACTGAAATACAAAGCTATATTTTGGGACGGGTAAAAGAACACCAGGAAACATTGGACATGGACAATCCCCGAGACTTTATTGATTGTTTCTTAATCAGAATGGAACAGgtgagttatacagctaaaaaatttgctttccactcattaagcaccagcac Alignment from CESAR GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG attttgaaaaattcagtgagtggtgcccacaaatgcattgtcttcaacagGTCTACAATGCTCTGCCTACCCTCATTAATTACCTCCCAGGAAGTCACAACAAAGTAATAAAAAACTTTACTGAAATACAAAGCTATATTTTGGGACGGGTAAAAGAACACCAGGAAACATTGGACATGGACAATCCCCGAGACTTTATTGATTGTTTCTTAATCAGAATGGAACAGgtgagttatacagctaaaaaatttgctttccactcattaagcaccagcac Alignment from Spaln_aa2Genome GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG attttgaaaaattcagtgagtggtgcccacaaatgcattgtcttcaacagGTCTACAATGCTCTGCCTACCCTCATTAATTACCTCCCAGGAAGTCACAACAAAGTAATAAAAAACTTTACTGAAATACAAAGCTATATTTTGGGACGGGTAAAAGAACACCAGGAAACATTGGACATGGACAATCCCCGAGACTTTATTGATTGTTTCTTAATCAGAATGGAACAGgtgagttatacagctaaaaaatttgctttccactcattaagcaccagcac Alignment from Spaln_nt2Genome GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG attttgaaaaattcagtgagtggtgcccacaaatgcattgtcttcaacagGTCTACAATGCTCTGCCTACCCTCATTAATTACCTCCCAGGAAGTCACAACAAAGTAATAAAAAACTTTACTGAAATACAAAGCTATATTTTGGGACGGGTAAAAGAACACCAGGAAACATTGGACATGGACAATCCCCGAGACTTTATTGATTGTTTCTTAATCAGAATGGAACAGgtgagttatacagctaaaaaatttgctttccactcattaagcaccagcac Alignment from Pairagon GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG attttgaaaaattcagtgagtggtgcccacaaatgcattgtcttcaacagGTCTACAATGCTCTGCCTACCCTCATTAATTACCTCCCAGGAAGTCACAACAAAGTAATAAAAAACTTTACTGAAATACAAAGCTATATTTTGGGACGGGTAAAAGAACACCAGGAAACATTGGACATGGACAATCCCCGAGACTTTATTGATTGTTTCTTAATCAGAATGGAACAGgtgagttatacagctaaaaaatttgctttccactcattaagcaccagcac Alignment from Exonerate_protein2genome GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG attttgaaaaattcagtgagtggtgcccacaaatgcattgtcttcaacagGTCTACAATGCTCTGCCTACCCTCATTAATTACCTCCCAGGAAGTCACAACAAAGTAATAAAAAACTTTACTGAAATACAAAGCTATATTTTGGGACGGGTAAAAGAACACCAGGAAACATTGGACATGGACAATCCCCGAGACTTTATTGATTGTTTCTTAATCAGAATGGAACAGgtgagttatacagctaaaaaatttgctttccactcattaagcaccagcac Alignment from Exonerate_coding2genome GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG attttgaaaaattcagtgagtggtgcccacaaatgcattgtcttcaacagGTCTACAATGCTCTGCCTACCCTCATTAATTACCTCCCAGGAAGTCACAACAAAGTAATAAAAAACTTTACTGAAATACAAAGCTATATTTTGGGACGGGTAAAAGAACACCAGGAAACATTGGACATGGACAATCCCCGAGACTTTATTGATTGTTTCTTAATCAGAATGGAACAGgtgagttatacagctaaaaaatttgctttccactcattaagcaccagcac Alignment from GeneWise ---TACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG attttgaaaaattcagtgagtggtgcccacaaatgcattgtcttcaacagGTCTACAATGCTCTGCCTACCCTCATTAATTACCTCCCAGGAAGTCACAACAAAGTAATAAAAAACTTTACTGAAATACAAAGCTATATTTTGGGACGGGTAAAAGAACACCAGGAAACATTGGACATGGACAATCCCCGAGACTTTATTGATTGTTTCTTAATCAGAATGGAACAGgtgagttatacagctaaaaaatttgctttccactcattaagcaccagcac #### Cyp2c65_ID7740_6 --> 0 - 1 Original Alignment GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGGTCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTAC------TCTCTGCTGCTCCTGCTCAAGTATCCAGAAGTCACAg ggttactatgatgaatccatggttgggtcactgtggacatctgatttcagGACAAGCATAACCCTAAGACAGAGTTTAGTTGTGAAAACTTAGTCTTCACATCTTCTGAG---TTTGCTGATGGGGCAGAAACAACAAGTACAACCCTTAGGTACTGGTATTCATTG---------CTCAAGTATCCAGAAGTGACAagtaagagctcatggctgttttggaaacccataatacgaaacttgcaacta Alignment from CESAR GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGGTCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTAC------TCTCTGCTGCTCCTGCTCAAGTATCCAGAAGTCACAg ggttactatgatgaatccatggttgggtcactgtggacatctgatttcagGACAAGCATAACCCTAAGACAGAGTTTAGTTGTGAAAACTTAGTCTTCACATCTTCTGAG---TTTGCTGATGGGGCAGAAACAACAAGTACAACCCTTAGGTACTGGTATTCA---------TTGCTCAAGTATCCAGAAGTGACAagtaagagctcatggctgttttggaaacccataatacgaaacttgcaacta Alignment from Spaln_aa2Genome GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGGTCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTACTCTCTGCTGCTCCTGCTCAAGTATCCAGAAGTCACAG ggttactatgatgaatccatggttgggtcactgtggacatctgatttcagGACAAGCATAACCCTAAGACAGAGTTTAGTTGTGAAAACTTAGTCTTCACATCTTCTGAG---TTTGCTGATGGGGCAGAAACAACAAGTACAACCCTTAGGTAC---TGGTATTCATTGCTCAAGTATCCAGAAGTGACAAgtaagagctcatggctgttttggaaacccataatacgaaacttgcaacta Alignment from Spaln_nt2Genome GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGGTCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTACTCTCTGCTGCTCCT-GCTCAAGTATCCAGAAGTCACAG ggttactatgatgaatccatggttgggtcactgtggacatctgatttcagGACAAGCATAACCCTAAGACAGAGTTTAGTTGTGAAAACTTAGTCTTCACATCTTCTGA---GTTTGCTGATGGGGCAGAAACAACAAGTACAACCCTTAGGTA----CTGGTATTCATTGCTCAAGTATCCAGAAGTGACAAgtaagagctcatggctgttttggaaacccataatacgaaacttgcaacta Alignment from Pairagon GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGGTCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTAC---------TCTCTGCTGCTCCTGCTCAAGTATCCAGAAGTCACAG ggttactatgatgaatccatggttgggtcactgtggacatctgatttcagGACAAGCATAACCCTAAGACAGAGTTTAGTTGTGAAAACTTAGTCTTCACATCTTCTGA---GTTTGCTGATGGGGCAGAAACAACAAGTACAACCCTTAGGTACTGGTATTCAT------------TGCTCAAGTATCCAGAAGTGACAAgtaagagctcatggctgttttggaaacccataatacgaaacttgcaacta Alignment from Exonerate_protein2genome GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGGTCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTACTCTCTGCTGCTCCTGCTCAAGTATCCAGAAGTCACAG ggttactatgatgaatccatggttgggtcactgtggacatctgatttcagGACAAGCATAACCCTAAGACAGAGTTTAGTTGTGAAAACTTAGTCTTCACATCTTCTGAG---TTTGCTGATGGGGCAGAAACAACAAGTACAACCCTTAGGTAC---TGGTATTCATTGCTCAAGTATCCAGAAGTGACAAgtaagagctcatggctgttttggaaacccataatacgaaacttgcaacta Alignment from Exonerate_coding2genome ggttactatgatgaatccatggttgggtcactgtggacatctgatttcaggacaagcataaccctaagacagagtttagttgtgaaaacttagtcttcacatcttctgagtttgctgatggggcagaaacaacaagtacaacccttaggtactggtattcattgctcaagtatccagaagtgacaagtaagagctcatggctgttttggaaacccataatacgaaacttgcaacta Alignment from GeneWise GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGGTCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTACTCTCTGCTGCTCCTGCTCAAGTATCCAGAAGTCACAG ggttactatgatgaatccatggttgggtcactgtggacatctgatttcagGACAAGCATAACCCTAAGACAGAGTTTAGTTGTGAAAACTTAGTCTTCACATCTTCTGAG---TTTGCTGATGGGGCAGAAACAACAAGTACAACCCTTAGGTAC---TGGTATTCATTGCTCAAGTATCCAGAAGTGACAAgtaagagctcatggctgttttggaaacccataatacgaaacttgcaacta #### Cyp2c65_ID7742_8 --> 0 - 1 Original Alignment GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCCCAACCCAGAGAAGTTTGACCCCAGTCACTTTCTGGATGAGCGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAg acttttaaccttttggcaggatgttactacatgatatttttctttttcagGGTACATCTGTTATTGCATCATTGACTCCTGTGCTGTATGACGATAAAGAATTTCCCAATCCAGAGAGGTTTGACCCCAGTCACTTTTTAGAGGAGCATGGTAGGTTTAAGAAAAGTGACTACTTTTTTCCCTTCTCAACAggtgagtatagttacttgctgattttttcctcccctgtagaagctcaaaca Alignment from CESAR GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCCCAACCCAGAGAAGTTTGACCCCAGTCACTTTCTGGATGAGCGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAg acttttaaccttttggcaggatgttactacatgatatttttctttttcagGGTACATCTGTTATTGCATCATTGACTCCTGTGCTGTATGACGATAAAGAATTTCCCAATCCAGAGAGGTTTGACCCCAGTCACTTTTTAGAGGAGCATGGTAGGTTTAAGAAAAGTGACTACTTTTTTCCCTTCTCAACAggtgagtatagttacttgctgattttttcctcccctgtagaagctcaaaca Alignment from Spaln_aa2Genome GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCCCAACCCAGAGAAGTTTGACCCCAGTCACTTTCTGGATGAGCGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAG acttttaaccttttggcaggatgttactacatgatatttttctttttcagGGTACATCTGTTATTGCATCATTGACTCCTGTGCTGTATGACGATAAAGAATTTCCCAATCCAGAGAGGTTTGACCCCAGTCACTTTTTAGAGGAGCATGGTAGGTTTAAGAAAAGTGACTACTTTTTTCCCTTCTCAACAGgtgagtatagttacttgctgattttttcctcccctgtagaagctcaaaca Alignment from Spaln_nt2Genome GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCCCAACCCAGAGAAGTTTGACCCCAGTCACTTTCTGGATGAGCGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAG acttttaaccttttggcaggatgttactacatgatatttttctttttcagGGTACATCTGTTATTGCATCATTGACTCCTGTGCTGTATGACGATAAAGAATTTCCCAATCCAGAGAGGTTTGACCCCAGTCACTTTTTAGAGGAGCATGGTAGGTTTAAGAAAAGTGACTACTTTTTTCCCTTCTCAACAGgtgagtatagttacttgctgattttttcctcccctgtagaagctcaaaca Alignment from Pairagon GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCCCAACCCAGAGAAGTTTGACCCCAGTCACTTTCTGGATGAGCGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAG acttttaaccttttggcaggatgttactacatgatatttttctttttcagGGTACATCTGTTATTGCATCATTGACTCCTGTGCTGTATGACGATAAAGAATTTCCCAATCCAGAGAGGTTTGACCCCAGTCACTTTTTAGAGGAGCATGGTAGGTTTAAGAAAAGTGACTACTTTTTTCCCTTCTCAACAGgtgagtatagttacttgctgattttttcctcccctgtagaagctcaaaca Alignment from Exonerate_protein2genome GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCCCAACCCAGAGAAGTTTGACCCCAGTCACTTTCTGGATGAGCGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAG acttttaaccttttggcaggatgttactacatgatatttttctttttcagGGTACATCTGTTATTGCATCATTGACTCCTGTGCTGTATGACGATAAAGAATTTCCCAATCCAGAGAGGTTTGACCCCAGTCACTTTTTAGAGGAGCATGGTAGGTTTAAGAAAAGTGACTACTTTTTTCCCTTCTCAACAGgtgagtatagttacttgctgattttttcctcccctgtagaagctcaaaca Alignment from Exonerate_coding2genome acttttaaccttttggcaggatgttactacatgatatttttctttttcagggtacatctgttattgcatcattgactcctgtgctgtatgacgataaagaatttcccaatccagagaggtttgaccccagtcactttttagaggagcatggtaggtttaagaaaagtgactacttttttcccttctcaacaggtgagtatagttacttgctgattttttcctcccctgtagaagctcaaaca Alignment from GeneWise GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCCCAACCCAGAGAAGTTTGACCCCAGTCACTTTCTGGATGAGCGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAG acttttaaccttttggcaggatgttactacatgatatttttctttttcagGGTACATCTGTTATTGCATCATTGACTCCTGTGCTGTATGACGATAAAGAATTTCCCAATCCAGAGAGGTTTGACCCCAGTCACTTTTTAGAGGAGCATGGTAGGTTTAAGAAAAGTGACTACTTTTTTCCCTTCTCAACAGgtgagtatagttacttgctgattttttcctcccctgtagaagctcaaaca #### Cyp2c66_ID7753_8 --> 0 - 1 Original Alignment GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCTCAACCCAGAGAGGTTTGATCCTAGTCACTTTCTGGATGAGAGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAg tctctgaaacctgtatgttgtttgaaatggtgctgctgctctgatttcagGGCTCTACTGTGATTGCATCACTAACTCCTGTGCTATATGATGAGAAGGAGTTCCTAAACCCTGAAAGGTTT---CCCAGCCACCTGCTTGATGAAAGTGGCAAATTTGGAAAGAGTGATTACTTTTTTCCCTTCTCAACAggtacagtgaacatttatttggggccttttcaacctcgagaatatggtgaa Alignment from CESAR GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCTCAACCCAGAGAGGTTTGATCCTAGTCACTTTCTGGATGAGAGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAg tctctgaaacctgtatgttgtttgaaatggtgctgctgctctgatttcagGGCTCTACTGTGATTGCATCACTAACTCCTGTGCTATATGATGAGAAGGAGTTCCTAAACCCTGAAAGGTTT---CCCAGCCACCTGCTTGATGAAAGTGGCAAATTTGGAAAGAGTGATTACTTTTTTCCCTTCTCAACAggtacagtgaacatttatttggggccttttcaacctcgagaatatggtgaa Alignment from Spaln_aa2Genome GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCTCAACCCAGAGAGGTTTGATCCTAGTCACTTTCTGGATGAGAGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAG tctctgaaacctgtatgttgtttgaaatggtgctgctgctctgatttcagGGCTCTACTGTGATTGCATCACTAACTCCTGTGCTATATGATGAGAAGGAGTTCCTAAACCCTGAAAGGTTT---CCCAGCCACCTGCTTGATGAAAGTGGCAAATTTGGAAAGAGTGATTACTTTTTTCCCTTCTCAACAGgtacagtgaacatttatttggggccttttcaacctcgagaatatggtgaa Alignment from Spaln_nt2Genome GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCTCAACCCAGAGAGGTTTGATCCTAGTCACTTTCTGGATGAGAGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAGGAAAA tctctgaaacctgtatgttgtttgaaatggtgctgctgctctgatttcagGGCTCTACTGTGATTGCATCACTAACTCCTGTGCTATATGATGAGAAGGAGTTCCTAAACCCTGAAAGGTT---TCCCAGCCACCTGCTTGATGAAAGTGGCAAATTTGGAAAGAGTGATTACTTTTTTCCCTTCTCAACAGGTACAgtgaacatttatttggggccttttcaacctcgagaatatggtgaa Alignment from Pairagon GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCTCAACCCAGAGAGGTTTGATCCTAGTCACTTTCTGGATGAGAGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAG tctctgaaacctgtatgttgtttgaaatggtgctgctgctctgatttcagGGCTCTACTGTGATTGCATCACTAACTCCTGTGCTATATGATGAGAAGGAGTTCCTAAACCCTGAAAGGTT---TCCCAGCCACCTGCTTGATGAAAGTGGCAAATTTGGAAAGAGTGATTACTTTTTTCCCTTCTCAACAGgtacagtgaacatttatttggggccttttcaacctcgagaatatggtgaa Alignment from Exonerate_protein2genome GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCTCAACCCAGAGAGGTTTGATCCTAGTCACTTTCTGGATGAGAGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAG tctctgaaacctgtatgttgtttgaaatggtgctgctgctctgatttcagGGCTCTACTGTGATTGCATCACTAACTCCTGTGCTATATGATGAGAAGGAGTTCCTAAACCCTGAAAGGTTT---CCCAGCCACCTGCTTGATGAAAGTGGCAAATTTGGAAAGAGTGATTACTTTTTTCCCTTCTCAACAGgtacagtgaacatttatttggggccttttcaacctcgagaatatggtgaa Alignment from Exonerate_coding2genome GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCTCAACCCAGAGAGGTTTGATCCTAGTCACTTTCTGGATGAGAGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAG tctctgaaacctgtatgttgtttgaaatggtgctgctgctctgatttcagGGCTCTACTGTGATTGCATCACTAACTCCTGTGCTATATGATGAGAAGGAGTTCCTAAACCCTGAAAGGTTT---CCCAGCCACCTGCTTGATGAAAGTGGCAAATTTGGAAAGAGTGATTACTTTTTTCCCTTCTCAACAGgtacagtgaacatttatttggggccttttcaacctcgagaatatggtgaa Alignment from GeneWise GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCTCAACCCAGAGAGGTTTGATCCTAGTCACTTTCTGGATGAGAGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAG tctctgaaacctgtatgttgtttgaaatggtgctgctgctctgatttcagGGCTCTACTGTGATTGCATCACTAACTCCTGTGCTATATGATGAGAAGGAGTTCCTAAACCCTGAAAGGTTT---CCCAGCCACCTGCTTGATGAAAGTGGCAAATTTGGAAAGAGTGATTACTTTTTTCCCTTCTCAACAGgtacagtgaacatttatttggggccttttcaacctcgagaatatggtgaa #### Cyp2c67_ID7796_6 --> 0 - 1 Original Alignment GAAAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGTCCTTAAGCTCAACAATGAGATTTGCTCTCCTGCTCTTGATG---AAGCACACACACATCACAg gaggacttattaatgctaatggaggaccagtccttgcccacctccttcagGAAAAAGGCATAGAGCATATGGAGTATACCATCGAACGTCTGGCAACACTGGTC---GATCTGGTTTTTGATGGAACAGAGTCCATCACCTCAACCATGAGATTTGCTCTCTTGCTCTTAATAATGAAGCACACTCACATCACAggtaagtccatgggtcatgaagaacagcatctattgaagacctgaaaagaa Alignment from CESAR GAAAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGTCCTTAAGCTCAACAATGAGATTTGCTCTCCTGCTCTTG---ATGAAGCACACACACATCACAg gaggacttattaatgctaatggaggaccagtccttgcccacctccttcagGAAAAAGGCATAGAGCATATGGAGTATACCATCGAACGTCTGGCAACACTGGTC---GATCTGGTTTTTGATGGAACAGAGTCCATCACCTCAACCATGAGATTTGCTCTCTTGCTCTTAATAATGAAGCACACTCACATCACAggtaagtccatgggtcatgaagaacagcatctattgaagacctgaaaagaa Alignment from Spaln_aa2Genome CAGGAAAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGTCCTTAAGCTCAACAATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG gaggacttattaatgctaatggaggaccagtccttgcccacctccttcag---GAAAAAGGCATAGAGCATATGGAGTATACCATCGAACGTCTGGCAACACTGGTCGATCTGGTTTTTGATGGAACAGAGTCCATCACCTCAACCATGAGATTTGCTCTCTTGCTCTTAATAATGAAGCACACTCACATCACAGgtaagtccatgggtcatgaagaacagcatctattgaagacctgaaaagaa Alignment from Spaln_nt2Genome GAAAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGTCCTTAAGCTCAACAATGAGATTTGCTCTCCTGCTCTTG---ATGAAGCACACACACATCACAG gaggacttattaatgctaatggaggaccagtccttgcccacctccttcagGAAAAAGGCATAGAGCATATGGAGTATACCATCGAACGTCTGGCAACACTGGT---CGATCTGGTTTTTGATGGAACAGAGTCCATCACCTCAACCATGAGATTTGCTCTCTTGCTCTTAATAATGAAGCACACTCACATCACAGgtaagtccatgggtcatgaagaacagcatctattgaagacctgaaaagaa Alignment from Pairagon GAAAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGTCCTTAAGCTCAACAATGAGATTTGCTCTCCTGCTCT---TGATGAAGCACACACACATCACAG gaggacttattaatgctaatggaggaccagtccttgcccacctccttcagGAAAAAGGCATAGAGCATATGGAGTATACCATCGAACGTCTGGCAACACTGGT---CGATCTGGTTTTTGATGGAACAGAGTCCATCACCTCAACCATGAGATTTGCTCTCTTGCTCTTAATAATGAAGCACACTCACATCACAGgtaagtccatgggtcatgaagaacagcatctattgaagacctgaaaagaa Alignment from Exonerate_protein2genome CAGGAAAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGTCCTTAAGCTCAACAATGAGATTTGCTCTCCTGCTCTTG---ATGAAGCACACACACATCACAG gaggacttattaatgctaatggaggaccagtccttgcccacctccttCAGGAAAAAGGCATAGAGCATATGGAGTATACCATCGAACGTCTGGCAACACTGGTC---GATCTGGTTTTTGATGGAACAGAGTCCATCACCTCAACCATGAGATTTGCTCTCTTGCTCTTAATAATGAAGCACACTCACATCACAGgtaagtccatgggtcatgaagaacagcatctattgaagacctgaaaagaa Alignment from Exonerate_coding2genome CAGGAAAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGTCCTTAAGCTCAACAATGAGATTTGCTCTCCTGCTCTTG---ATGAAGCACACACACATCACAG gaggacttattaatgctaatggaggaccagtccttgcccacctccttCAGGAAAAAGGCATAGAGCATATGGAGTATACCATCGAACGTCTGGCAACACTGGTC---GATCTGGTTTTTGATGGAACAGAGTCCATCACCTCAACCATGAGATTTGCTCTCTTGCTCTTAATAATGAAGCACACTCACATCACAGgtaagtccatgggtcatgaagaacagcatctattgaagacctgaaaagaa Alignment from GeneWise GAAAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGTCCTTAAGCTCAACAATGAGATTTGCTCTCCTGCTCTTG---ATGAAGCACACACACATCACAG gaggacttattaatgctaatggaggaccagtccttgcccacctccttcagGAAAAAGGCATAGAGCATATGGAGTATACCATCGAACGTCTGGCAACACTGGTC---GATCTGGTTTTTGATGGAACAGAGTCCATCACCTCAACCATGAGATTTGCTCTCTTGCTCTTAATAATGAAGCACACTCACATCACAGgtaagtccatgggtcatgaagaacagcatctattgaagacctgaaaagaa #### Cyp2c69_ID7827_8 --> 0 - 1 Original Alignment GGAACACAGGTAATGACATCACTGTCATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAg agtttttgaatatcagtacactgcctgcttttcttttctctaaaatgaagGGAACTCAGGTAATGTCTTCTCTGCCTCCAGTTCTCCATTACAGCATGAAATTCCCCAACCCAGTGGAGTTTGACCCAGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTTGTGCCATTCTCAACAggtaagtgaaagctaatcccatggccacagtaggctacagtacagatctca Alignment from CESAR GGAACACAGGTAATGACATCACTGTCATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAg agtttttgaatatcagtacactgcctgcttttcttttctctaaaatgaagGGAACTCAGGTAATGTCTTCTCTGCCTCCAGTTCTCCATTACAGCATGAAATTCCCCAACCCAGTGGAGTTTGACCCAGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTTGTGCCATTCTCAACAggtaagtgaaagctaatcccatggccacagtaggctacagtacagatctca Alignment from Spaln_aa2Genome GGAACACAGGTAATGACATCACTGTCATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG agtttttgaatatcagtacactgcctgcttttcttttctctaaaatgaagGGAACTCAGGTAATGTCTTCTCTGCCTCCAGTTCTCCATTACAGCATGAAATTCCCCAACCCAGTGGAGTTTGACCCAGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTTGTGCCATTCTCAACAGgtaagtgaaagctaatcccatggccacagtaggctacagtacagatctca Alignment from Spaln_nt2Genome GGAACACAGGTAATGACATCACTGTCATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG agtttttgaatatcagtacactgcctgcttttcttttctctaaaatgaagGGAACTCAGGTAATGTCTTCTCTGCCTCCAGTTCTCCATTACAGCATGAAATTCCCCAACCCAGTGGAGTTTGACCCAGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTTGTGCCATTCTCAACAGgtaagtgaaagctaatcccatggccacagtaggctacagtacagatctca Alignment from Pairagon GGAACACAGGTAATGACATCACTGTCATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG agtttttgaatatcagtacactgcctgcttttcttttctctaaaatgaagGGAACTCAGGTAATGTCTTCTCTGCCTCCAGTTCTCCATTACAGCATGAAATTCCCCAACCCAGTGGAGTTTGACCCAGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTTGTGCCATTCTCAACAGgtaagtgaaagctaatcccatggccacagtaggctacagtacagatctca Alignment from Exonerate_protein2genome GGAACACAGGTAATGACATCACTGTCATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG agtttttgaatatcagtacactgcctgcttttcttttctctaaaatgaagGGAACTCAGGTAATGTCTTCTCTGCCTCCAGTTCTCCATTACAGCATGAAATTCCCCAACCCAGTGGAGTTTGACCCAGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTTGTGCCATTCTCAACAGgtaagtgaaagctaatcccatggccacagtaggctacagtacagatctca Alignment from Exonerate_coding2genome GGAACACAGGTAATGACATCACTGTCATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG agtttttgaatatcagtacactgcctgcttttcttttctctaaaatgaagGGAACTCAGGTAATGTCTTCTCTGCCTCCAGTTCTCCATTACAGCATGAAATTCCCCAACCCAGTGGAGTTTGACCCAGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTTGTGCCATTCTCAACAGgtaagtgaaagctaatcccatggccacagtaggctacagtacagatctca Alignment from GeneWise GGAACACAGGTAATGACATCACTGTCATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG agtttttgaatatcagtacactgcctgcttttcttttctctaaaatgaagGGAACTCAGGTAATGTCTTCTCTGCCTCCAGTTCTCCATTACAGCATGAAATTCCCCAACCCAGTGGAGTTTGACCCAGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTTGTGCCATTCTCAACAGgtaagtgaaagctaatcccatggccacagtaggctacagtacagatctca #### Cyp2c69_ID7828_7 --> 2 - 0 Original Alignment ctAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAAACATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACCTTGGCCCAACTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG tctatccctttagcctgaagctatttttcacacagctgtctgtactgcagctAAAGTTCAGGAAGAGAGTGAT---GGGATTGGCAGACCCCACAGCCGTTGCATGCAGGATAGGAAAGACATGCCATACACAAATGCCATGGTGCATGAGGTCCAACGGTATGTTGATGTTTGCCCAACTAGTTTGGTGCATGAGCTAACCTGTGACACTAAGTTCAGGAACTACTTCATCGCTAAAgtaatacttggtcttagtggtttctgtgctttgggtgttcacaagtacaa Alignment from CESAR ctAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAAACATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACCTTGGCCCAACTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG tctatccctttagcctgaagctatttttcacacagctgtctgtactgcagctAAAGTTCAGGAAGAGAGTGATGGG---ATTGGCAGACCCCACAGCCGTTGCATGCAGGATAGGAAAGACATGCCATACACAAATGCCATGGTGCATGAGGTCCAACGGTATGTTGATGTTTGCCCAACTAGTTTGGTGCATGAGCTAACCTGTGACACTAAGTTCAGGAACTACTTCATCGCTAAAgtaatacttggtcttagtggtttctgtgctttgggtgttcacaagtacaa Alignment from Spaln_aa2Genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAAACATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACCTTGGCCCAACTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG tctatccctttagcctgaagctatttttcacacagctgtctgtactgcagCTAAAGTTCAGGAAGAGAGTGATGGG---ATTGGCAGACCCCACAGCCGTTGCATGCAGGATAGGAAAGACATGCCATACACAAATGCCATGGTGCATGAGGTCCAACGGTATGTTGATGTTTGCCCAACTAGTTTGGTGCATGAGCTAACCTGTGACACTAAGTTCAGGAACTACTTCATCGCTAAAgtaatacttggtcttagtggtttctgtgctttgggtgttcacaagtacaa Alignment from Spaln_nt2Genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAAACATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACCTTGGCCCAACTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG tctatccctttagcctgaagctatttttcacacagctgtctgtactgcagCTAAAGTTCAGGAAGAGAGTG---ATGGGATTGGCAGACCCCACAGCCGTTGCATGCAGGATAGGAAAGACATGCCATACACAAATGCCATGGTGCATGAGGTCCAACGGTATGTTGATGTTTGCCCAACTAGTTTGGTGCATGAGCTAACCTGTGACACTAAGTTCAGGAACTACTTCATCGCTAAAgtaatacttggtcttagtggtttctgtgctttgggtgttcacaagtacaa Alignment from Pairagon CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAAACATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACCTTGGCCCAACTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG tctatccctttagcctgaagctatttttcacacagctgtctgtactgcagCTAAAGTTCAGGAAGAGAGTG---ATGGGATTGGCAGACCCCACAGCCGTTGCATGCAGGATAGGAAAGACATGCCATACACAAATGCCATGGTGCATGAGGTCCAACGGTATGTTGATGTTTGCCCAACTAGTTTGGTGCATGAGCTAACCTGTGACACTAAGTTCAGGAACTACTTCATCGCTAAAgtaatacttggtcttagtggtttctgtgctttgggtgttcacaagtacaa Alignment from Exonerate_protein2genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAAACATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACCTTGGCCCAACTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG tctatccctttagcctgaagctatttttcacacagctgtctgtactgcagCTAAAGTTCAGGAAGAGAGTGATGGG---ATTGGCAGACCCCACAGCCGTTGCATGCAGGATAGGAAAGACATGCCATACACAAATGCCATGGTGCATGAGGTCCAACGGTATGTTGATGTTTGCCCAACTAGTTTGGTGCATGAGCTAACCTGTGACACTAAGTTCAGGAACTACTTCATCGCTAAAgtaatacttggtcttagtggtttctgtgctttgggtgttcacaagtacaa Alignment from Exonerate_coding2genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAAACATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACCTTGGCCCAACTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG tctatccctttagcctgaagctatttttcacacagctgtctgtactgcagCTAAAGTTCAGGAAGAGAGTGATGGG---ATTGGCAGACCCCACAGCCGTTGCATGCAGGATAGGAAAGACATGCCATACACAAATGCCATGGTGCATGAGGTCCAACGGTATGTTGATGTTTGCCCAACTAGTTTGGTGCATGAGCTAACCTGTGACACTAAGTTCAGGAACTACTTCATCGCTAAAgtaatacttggtcttagtggtttctgtgctttgggtgttcacaagtacaa Alignment from GeneWise CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAAACATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACCTTGGCCCAACTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG tctatccctttagcctgaagctatttttcacacagctgtctgtactgcagCTAAAGTTCAGGAAGAGAGTGATGGG---ATTGGCAGACCCCACAGCCGTTGCATGCAGGATAGGAAAGACATGCCATACACAAATGCCATGGTGCATGAGGTCCAACGGTATGTTGATGTTTGCCCAACTAGTTTGGTGCATGAGCTAACCTGTGACACTAAGTTCAGGAACTACTTCATCGCTAAAgtaatacttggtcttagtggtttctgtgctttgggtgttcacaagtacaa #### Cyp2c69_ID7831_4 --> 2 - 0 Original Alignment gcTCACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTCGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG gaaacttcatcttgactgatcctgaaatttttcccctctctccgttgtaggcTCAACATTTGATCCCCAATTCATCATAGGGTGCACTCCCTGCAATGTGATTTGCTCAATCATTTTTCAGAATCACTTTGATTACAAGGATCAGGATTTCCTTAGCCTGATAGGAAAAGTAAATGATTGCACAGAAATTTTAACCTCTCCTGGGTGCCAGgtgagttcaaggtttccctcactgaaacattgcgtgtgacactcgcaatt Alignment from CESAR gcTCACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTCGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG gaaacttcatcttgactgatcctgaaatttttcccctctctccgttgtaggcTCAACATTTGATCCCCAATTCATCATAGGGTGCACTCCCTGCAATGTGATTTGCTCAATCATTTTTCAGAATCACTTTGATTACAAGGATCAGGATTTCCTTAGCCTGATAGGAAAAGTAAATGATTGCACAGAAATTTTAACCTCTCCTGGGTGCCAGgtgagttcaaggtttccctcactgaaacattgcgtgtgacactcgcaatt Alignment from Spaln_aa2Genome GCTCACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTCGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG gaaacttcatcttgactgatcctgaaatttttcccctctctccgttgtagGCTCAACATTTGATCCCCAATTCATCATAGGGTGCACTCCCTGCAATGTGATTTGCTCAATCATTTTTCAGAATCACTTTGATTACAAGGATCAGGATTTCCTTAGCCTGATAGGAAAAGTAAATGATTGCACAGAAATTTTAACCTCTCCTGGGTGCCAGgtgagttcaaggtttccctcactgaaacattgcgtgtgacactcgcaatt Alignment from Spaln_nt2Genome GCTCACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTCGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG gaaacttcatcttgactgatcctgaaatttttcccctctctccgttgtagGCTCAACATTTGATCCCCAATTCATCATAGGGTGCACTCCCTGCAATGTGATTTGCTCAATCATTTTTCAGAATCACTTTGATTACAAGGATCAGGATTTCCTTAGCCTGATAGGAAAAGTAAATGATTGCACAGAAATTTTAACCTCTCCTGGGTGCCAGgtgagttcaaggtttccctcactgaaacattgcgtgtgacactcgcaatt Alignment from Pairagon GCTCACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTCGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG gaaacttcatcttgactgatcctgaaatttttcccctctctccgttgtagGCTCAACATTTGATCCCCAATTCATCATAGGGTGCACTCCCTGCAATGTGATTTGCTCAATCATTTTTCAGAATCACTTTGATTACAAGGATCAGGATTTCCTTAGCCTGATAGGAAAAGTAAATGATTGCACAGAAATTTTAACCTCTCCTGGGTGCCAGgtgagttcaaggtttccctcactgaaacattgcgtgtgacactcgcaatt Alignment from Exonerate_protein2genome GCTCACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTCGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG gaaacttcatcttgactgatcctgaaatttttcccctctctccgttgtagGCTCAACATTTGATCCCCAATTCATCATAGGGTGCACTCCCTGCAATGTGATTTGCTCAATCATTTTTCAGAATCACTTTGATTACAAGGATCAGGATTTCCTTAGCCTGATAGGAAAAGTAAATGATTGCACAGAAATTTTAACCTCTCCTGGGTGCCAGgtgagttcaaggtttccctcactgaaacattgcgtgtgacactcgcaatt Alignment from Exonerate_coding2genome GCTCACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTCGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG gaaacttcatcttgactgatcctgaaatttttcccctctctccgttgtagGCTCAACATTTGATCCCCAATTCATCATAGGGTGCACTCCCTGCAATGTGATTTGCTCAATCATTTTTCAGAATCACTTTGATTACAAGGATCAGGATTTCCTTAGCCTGATAGGAAAAGTAAATGATTGCACAGAAATTTTAACCTCTCCTGGGTGCCAGgtgagttcaaggtttccctcactgaaacattgcgtgtgacactcgcaatt Alignment from GeneWise GCTCACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTCGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG gaaacttcatcttgactgatcctgaaatttttcccctctctccgttgtagGCTCAACATTTGATCCCCAATTCATCATAGGGTGCACTCCCTGCAATGTGATTTGCTCAATCATTTTTCAGAATCACTTTGATTACAAGGATCAGGATTTCCTTAGCCTGATAGGAAAAGTAAATGATTGCACAGAAATTTTAACCTCTCCTGGGTGCCAGgtgagttcaaggtttccctcactgaaacattgcgtgtgacactcgcaatt #### Cyp2c70_ID7874_6 --> 0 - 1 Original Alignment GAAAAACACAATCAAAAATCTGAATTTACTATGGATAACCTGGTTGTCAGCATAGGTGATCTTTTTGGAGCCGGAACAGAGACAACGAGTTCCACAGTGAAATATGGGCTTTTGCTCCTGCTGAAGTACCCAGAAGTCACAg tataaattaccttctatacactgccttaggtgttattttcttgttttcagGAGAAACATAATCAGAAATCTAAATTCTCTATGGACAACCTACTTGTGAGCATACGTGATCTGTTTGGGACTGGCACTGAGACTACATGTTCTATAGTAAAATATGGACTTCTGCTCCTGCTTAAGCATCCTGAGGTTACGagtgaggttaggtgggcaagggtgtactaacctatgccagagtgaaatcct Alignment from CESAR GAAAAACACAATCAAAAATCTGAATTTACTATGGATAACCTGGTTGTCAGCATAGGTGATCTTTTTGGAGCCGGAACAGAGACAACGAGTTCCACAGTGAAATATGGGCTTTTGCTCCTGCTGAAGTACCCAGAAGTCACAg tataaattaccttctatacactgccttaggtgttattttcttgttttcagGAGAAACATAATCAGAAATCTAAATTCTCTATGGACAACCTACTTGTGAGCATACGTGATCTGTTTGGGACTGGCACTGAGACTACATGTTCTATAGTAAAATATGGACTTCTGCTCCTGCTTAAGCATCCTGAGGTTACGagtgaggttaggtgggcaagggtgtactaacctatgccagagtgaaatcct Alignment from Spaln_aa2Genome GAAAAACACAATCAAAAATCTGAATTTACTATGGATAACCTGGTTGTCAGCATAGGTGATCTTTTTGGAGCCGGAACAGAGACAACGAGTTCCACAGTGAAATATGGGCTTTTGCTCCTGCTGAAGTACCCAGAAGTCACAG tataaattaccttctatacactgccttaggtgttattttcttgttttcagGAGAAACATAATCAGAAATCTAAATTCTCTATGGACAACCTACTTGTGAGCATACGTGATCTGTTTGGGACTGGCACTGAGACTACATGTTCTATAGTAAAATATGGACTTCTGCTCCTGCTTAAGCATCCTGAGGTTACGAgtgaggttaggtgggcaagggtgtactaacctatgccagagtgaaatcct Alignment from Spaln_nt2Genome GAAAAACACAATCAAAAATCTGAATTTACTATGGATAACCTGGTTGTCAGCATAGGTGATCTTTTTGGAGCCGGAACAGAGACAACGAGTTCCACAGTGAAATATGGGCTTTTGCTCCTGCTGAAGTACCCAGAAGTCACAG tataaattaccttctatacactgccttaggtgttattttcttgttttcagGAGAAACATAATCAGAAATCTAAATTCTCTATGGACAACCTACTTGTGAGCATACGTGATCTGTTTGGGACTGGCACTGAGACTACATGTTCTATAGTAAAATATGGACTTCTGCTCCTGCTTAAGCATCCTGAGGTTACGAgtgaggttaggtgggcaagggtgtactaacctatgccagagtgaaatcct Alignment from Pairagon GAAAAACACAATCAAAAATCTGAATTTACTATGGATAACCTGGTTGTCAGCATAGGTGATCTTTTTGGAGCCGGAACAGAGACAACGAGTTCCACAGTGAAATATGGGCTTTTGCTCCTGCTGAAGTACCCAGAAGTCACAG tataaattaccttctatacactgccttaggtgttattttcttgttttcagGAGAAACATAATCAGAAATCTAAATTCTCTATGGACAACCTACTTGTGAGCATACGTGATCTGTTTGGGACTGGCACTGAGACTACATGTTCTATAGTAAAATATGGACTTCTGCTCCTGCTTAAGCATCCTGAGGTTACGAgtgaggttaggtgggcaagggtgtactaacctatgccagagtgaaatcct Alignment from Exonerate_protein2genome GAAAAACACAATCAAAAATCTGAATTTACTATGGATAACCTGGTTGTCAGCATAGGTGATCTTTTTGGAGCCGGAACAGAGACAACGAGTTCCACAGTGAAATATGGGCTTTTGCTCCTGCTGAAGTACCCAGAAGTCACAG tataaattaccttctatacactgccttaggtgttattttcttgttttcagGAGAAACATAATCAGAAATCTAAATTCTCTATGGACAACCTACTTGTGAGCATACGTGATCTGTTTGGGACTGGCACTGAGACTACATGTTCTATAGTAAAATATGGACTTCTGCTCCTGCTTAAGCATCCTGAGGTTACGAgtgaggttaggtgggcaagggtgtactaacctatgccagagtgaaatcct Alignment from Exonerate_coding2genome GAAAAACACAATCAAAAATCTGAATTTACTATGGATAACCTGGTTGTCAGCATAGGTGATCTTTTTGGAGCCGGAACAGAGACAACGAGTTCCACAGTGAAATATGGGCTTTTGCTCCTGCTGAAGTACCCAGAAGTCACAG tataaattaccttctatacactgccttaggtgttattttcttgttttcagGAGAAACATAATCAGAAATCTAAATTCTCTATGGACAACCTACTTGTGAGCATACGTGATCTGTTTGGGACTGGCACTGAGACTACATGTTCTATAGTAAAATATGGACTTCTGCTCCTGCTTAAGCATCCTGAGGTTACGAgtgaggttaggtgggcaagggtgtactaacctatgccagagtgaaatcct Alignment from GeneWise GAAAAACACAATCAAAAATCTGAATTTACTATGGATAACCTGGTTGTCAGCATAGGTGATCTTTTTGGAGCCGGAACAGAGACAACGAGTTCCACAGTGAAATATGGGCTTTTGCTCCTGCTGAAGTACCCAGAAGTCACAG tataaattaccttctatacactgccttaggtgttattttcttgttttcagGAGAAACATAATCAGAAATCTAAATTCTCTATGGACAACCTACTTGTGAGCATACGTGATCTGTTTGGGACTGGCACTGAGACTACATGTTCTATAGTAAAATATGGACTTCTGCTCCTGCTTAAGCATCCTGAGGTTACGAgtgaggttaggtgggcaagggtgtactaacctatgccagagtgaaatcct #### Cyp2c70_ID7876_4 --> 2 - 0 Original Alignment gcTCCCCCTGTGATCCTAGCTTCCTTCTGGCCTGTGTTCCCTGCAATGTGATCTCTACTGTCATTTTCCAGCATCGATTTGACTACAATGATCAGACATTCCAAGACTTCATGGAGAATTTTCATAGAAAAATAGAAATTTTAGCATCTCCTTGGTCCCAG ggagaatggacactgaaataaatactaacatatctcctctgtccccacaggtTCCCCATGTGATCCTAGTTTCCTCCTGGCCTGTGTACCTTGTAATGTGATTTCTACTGTCATTTTTCAGCACCGGTTTGACTACAATGATCAGTCATTCCAAGACTTCATGGAAAATTTTCATAGAAAAATAGAAATTTTAGCATCTCCTTGGTCCCAGgtgaggccctagtttgtttcataggtgcaaagattacatcctctagtaca Alignment from CESAR gcTCCCCCTGTGATCCTAGCTTCCTTCTGGCCTGTGTTCCCTGCAATGTGATCTCTACTGTCATTTTCCAGCATCGATTTGACTACAATGATCAGACATTCCAAGACTTCATGGAGAATTTTCATAGAAAAATAGAAATTTTAGCATCTCCTTGGTCCCAG ggagaatggacactgaaataaatactaacatatctcctctgtccccacaggtTCCCCATGTGATCCTAGTTTCCTCCTGGCCTGTGTACCTTGTAATGTGATTTCTACTGTCATTTTTCAGCACCGGTTTGACTACAATGATCAGTCATTCCAAGACTTCATGGAAAATTTTCATAGAAAAATAGAAATTTTAGCATCTCCTTGGTCCCAGgtgaggccctagtttgtttcataggtgcaaagattacatcctctagtaca Alignment from Spaln_aa2Genome GCTCCCCCTGTGATCCTAGCTTCCTTCTGGCCTGTGTTCCCTGCAATGTGATCTCTACTGTCATTTTCCAGCATCGATTTGACTACAATGATCAGACATTCCAAGACTTCATGGAGAATTTTCATAGAAAAATAGAAATTTTAGCATCTCCTTGGTCCCAG ggagaatggacactgaaataaatactaacatatctcctctgtccccacagGTTCCCCATGTGATCCTAGTTTCCTCCTGGCCTGTGTACCTTGTAATGTGATTTCTACTGTCATTTTTCAGCACCGGTTTGACTACAATGATCAGTCATTCCAAGACTTCATGGAAAATTTTCATAGAAAAATAGAAATTTTAGCATCTCCTTGGTCCCAGgtgaggccctagtttgtttcataggtgcaaagattacatcctctagtaca Alignment from Spaln_nt2Genome GCTCCCCCTGTGATCCTAGCTTCCTTCTGGCCTGTGTTCCCTGCAATGTGATCTCTACTGTCATTTTCCAGCATCGATTTGACTACAATGATCAGACATTCCAAGACTTCATGGAGAATTTTCATAGAAAAATAGAAATTTTAGCATCTCCTTGGTCCCAG ggagaatggacactgaaataaatactaacatatctcctctgtccccacagGTTCCCCATGTGATCCTAGTTTCCTCCTGGCCTGTGTACCTTGTAATGTGATTTCTACTGTCATTTTTCAGCACCGGTTTGACTACAATGATCAGTCATTCCAAGACTTCATGGAAAATTTTCATAGAAAAATAGAAATTTTAGCATCTCCTTGGTCCCAGgtgaggccctagtttgtttcataggtgcaaagattacatcctctagtaca Alignment from Pairagon GCTCCCCCTGTGATCCTAGCTTCCTTCTGGCCTGTGTTCCCTGCAATGTGATCTCTACTGTCATTTTCCAGCATCGATTTGACTACAATGATCAGACATTCCAAGACTTCATGGAGAATTTTCATAGAAAAATAGAAATTTTAGCATCTCCTTGGTCCCAG ggagaatggacactgaaataaatactaacatatctcctctgtccccacagGTTCCCCATGTGATCCTAGTTTCCTCCTGGCCTGTGTACCTTGTAATGTGATTTCTACTGTCATTTTTCAGCACCGGTTTGACTACAATGATCAGTCATTCCAAGACTTCATGGAAAATTTTCATAGAAAAATAGAAATTTTAGCATCTCCTTGGTCCCAGgtgaggccctagtttgtttcataggtgcaaagattacatcctctagtaca Alignment from Exonerate_protein2genome GCTCCCCCTGTGATCCTAGCTTCCTTCTGGCCTGTGTTCCCTGCAATGTGATCTCTACTGTCATTTTCCAGCATCGATTTGACTACAATGATCAGACATTCCAAGACTTCATGGAGAATTTTCATAGAAAAATAGAAATTTTAGCATCTCCTTGGTCCCAG ggagaatggacactgaaataaatactaacatatctcctctgtccccacagGTTCCCCATGTGATCCTAGTTTCCTCCTGGCCTGTGTACCTTGTAATGTGATTTCTACTGTCATTTTTCAGCACCGGTTTGACTACAATGATCAGTCATTCCAAGACTTCATGGAAAATTTTCATAGAAAAATAGAAATTTTAGCATCTCCTTGGTCCCAGgtgaggccctagtttgtttcataggtgcaaagattacatcctctagtaca Alignment from Exonerate_coding2genome GCTCCCCCTGTGATCCTAGCTTCCTTCTGGCCTGTGTTCCCTGCAATGTGATCTCTACTGTCATTTTCCAGCATCGATTTGACTACAATGATCAGACATTCCAAGACTTCATGGAGAATTTTCATAGAAAAATAGAAATTTTAGCATCTCCTTGGTCCCAG ggagaatggacactgaaataaatactaacatatctcctctgtccccacagGTTCCCCATGTGATCCTAGTTTCCTCCTGGCCTGTGTACCTTGTAATGTGATTTCTACTGTCATTTTTCAGCACCGGTTTGACTACAATGATCAGTCATTCCAAGACTTCATGGAAAATTTTCATAGAAAAATAGAAATTTTAGCATCTCCTTGGTCCCAGgtgaggccctagtttgtttcataggtgcaaagattacatcctctagtaca Alignment from GeneWise GCTCCCCCTGTGATCCTAGCTTCCTTCTGGCCTGTGTTCCCTGCAATGTGATCTCTACTGTCATTTTCCAGCATCGATTTGACTACAATGATCAGACATTCCAAGACTTCATGGAGAATTTTCATAGAAAAATAGAAATTTTAGCATCTCCTTGGTCCCAG ggagaatggacactgaaataaatactaacatatctcctctgtccccacagGTTCCCCATGTGATCCTAGTTTCCTCCTGGCCTGTGTACCTTGTAATGTGATTTCTACTGTCATTTTTCAGCACCGGTTTGACTACAATGATCAGTCATTCCAAGACTTCATGGAAAATTTTCATAGAAAAATAGAAATTTTAGCATCTCCTTGGTCCCAGgtgaggccctagtttgtttcataggtgcaaagattacatcctctagtaca #### Cyp2c70_ID7878_2 --> 0 - 1 Original Alignment CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAg cagtaacctagcatgttgtggaggataatctttgtcatttctttgtttagTTAGCGAAAATGTATGGCCCTGTATTTACTGTGTATGTTGACATGAAGCCCACTGTGGTTCTGCATGGGTACAAACCCATGAAAGAAGCTCTAATTGACCATGGGGATGAATTCCCTGATAAAACAGACTCAACACTAATCAGCAGGACAAGCCAAGGCCTAggtacggcctcttgtctggggcattcagcccagtacacctgtcacaggaca Alignment from CESAR CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAg cagtaacctagcatgttgtggaggataatctttgtcatttctttgtttagTTAGCGAAAATGTATGGCCCTGTATTTACTGTGTATGTTGACATGAAGCCCACTGTGGTTCTGCATGGGTACAAACCCATGAAAGAAGCTCTAATTGACCATGGGGATGAATTCCCTGATAAAACAGACTCAACACTAATCAGCAGGACAAGCCAAGGCCTAggtacggcctcttgtctggggcattcagcccagtacacctgtcacaggaca Alignment from Spaln_aa2Genome CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAG cagtaacctagcatgttgtggaggataatctttgtcatttctttgtttagTTAGCGAAAATGTATGGCCCTGTATTTACTGTGTATGTTGACATGAAGCCCACTGTGGTTCTGCATGGGTACAAACCCATGAAAGAAGCTCTAATTGACCATGGGGATGAATTCCCTGATAAAACAGACTCAACACTAATCAGCAGGACAAGCCAAGGCCTAGgtacggcctcttgtctggggcattcagcccagtacacctgtcacaggaca Alignment from Spaln_nt2Genome CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAG cagtaacctagcatgttgtggaggataatctttgtcatttctttgtttagTTAGCGAAAATGTATGGCCCTGTATTTACTGTGTATGTTGACATGAAGCCCACTGTGGTTCTGCATGGGTACAAACCCATGAAAGAAGCTCTAATTGACCATGGGGATGAATTCCCTGATAAAACAGACTCAACACTAATCAGCAGGACAAGCCAAGGCCTAGgtacggcctcttgtctggggcattcagcccagtacacctgtcacaggaca Alignment from Pairagon CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAG cagtaacctagcatgttgtggaggataatctttgtcatttctttgtttagTTAGCGAAAATGTATGGCCCTGTATTTACTGTGTATGTTGACATGAAGCCCACTGTGGTTCTGCATGGGTACAAACCCATGAAAGAAGCTCTAATTGACCATGGGGATGAATTCCCTGATAAAACAGACTCAACACTAATCAGCAGGACAAGCCAAGGCCTAGgtacggcctcttgtctggggcattcagcccagtacacctgtcacaggaca Alignment from Exonerate_protein2genome CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAG cagtaacctagcatgttgtggaggataatctttgtcatttctttgtttagTTAGCGAAAATGTATGGCCCTGTATTTACTGTGTATGTTGACATGAAGCCCACTGTGGTTCTGCATGGGTACAAACCCATGAAAGAAGCTCTAATTGACCATGGGGATGAATTCCCTGATAAAACAGACTCAACACTAATCAGCAGGACAAGCCAAGGCCTAGgtacggcctcttgtctggggcattcagcccagtacacctgtcacaggaca Alignment from Exonerate_coding2genome CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAG cagtaacctagcatgttgtggaggataatctttgtcatttctttgtttagTTAGCGAAAATGTATGGCCCTGTATTTACTGTGTATGTTGACATGAAGCCCACTGTGGTTCTGCATGGGTACAAACCCATGAAAGAAGCTCTAATTGACCATGGGGATGAATTCCCTGATAAAACAGACTCAACACTAATCAGCAGGACAAGCCAAGGCCTAGgtacggcctcttgtctggggcattcagcccagtacacctgtcacaggaca Alignment from GeneWise CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAG cagtaacctagcatgttgtggaggataatctttgtcatttctttgtttagTTAGCGAAAATGTATGGCCCTGTATTTACTGTGTATGTTGACATGAAGCCCACTGTGGTTCTGCATGGGTACAAACCCATGAAAGAAGCTCTAATTGACCATGGGGATGAATTCCCTGATAAAACAGACTCAACACTAATCAGCAGGACAAGCCAAGGCCTAGgtacggcctcttgtctggggcattcagcccagtacacctgtcacaggaca #### D19Bwg1357e_ID5837_15 --> 0 - 1 Original Alignment CTTCATGTTGCTGAGCATCCTGCAGGACATCTGGTTCTCAAATGGTTACTAGAGCAAGATAAAAAGATGAAAGAAAGCGGAAAGGAAg gtcacctgtgaaagatacaaactagcacttgcttgtttattcctttatagCTGCATGTTGCTGAGCACCCTGCAGGACATCTGGTCCTCAAATGGCTACTAGAGCAAGATAAAAAGATGAAAGAATGCGGAAAGAAAggtaagggctatttgcctaagaattgggaagtttactgattagttcaggcc Alignment from CESAR CTTCATGTTGCTGAGCATCCTGCAGGACATCTGGTTCTCAAATGGTTACTAGAGCAAGATAAAAAGATGAAAGAAAGCGGAAAGGAAg gtcacctgtgaaagatacaaactagcacttgcttgtttattcctttatagCTGCATGTTGCTGAGCACCCTGCAGGACATCTGGTCCTCAAATGGCTACTAGAGCAAGATAAAAAGATGAAAGAATGCGGAAAGAAAggtaagggctatttgcctaagaattgggaagtttactgattagttcaggcc Alignment from Spaln_aa2Genome CTTCATGTTGCTGAGCATCCTGCAGGACATCTGGTTCTCAAATGGTTACTAGAGCAAGATAAAAAGATGAAAGAAAGCGGAAAGGAAG gtcacctgtgaaagatacaaactagcacttgcttgtttattcctttatagCTGCATGTTGCTGAGCACCCTGCAGGACATCTGGTCCTCAAATGGCTACTAGAGCAAGATAAAAAGATGAAAGAATGCGGAAAGAAAGgtaagggctatttgcctaagaattgggaagtttactgattagttcaggcc Alignment from Spaln_nt2Genome CTTCATGTTGCTGAGCATCCTGCAGGACATCTGGTTCTCAAATGGTTACTAGAGCAAGATAAAAAGATGAAAGAAAGCGGAAAGGAAG gtcacctgtgaaagatacaaactagcacttgcttgtttattcctttatagCTGCATGTTGCTGAGCACCCTGCAGGACATCTGGTCCTCAAATGGCTACTAGAGCAAGATAAAAAGATGAAAGAATGCGGAAAGAAAGgtaagggctatttgcctaagaattgggaagtttactgattagttcaggcc Alignment from Pairagon CTTCATGTTGCTGAGCATCCTGCAGGACATCTGGTTCTCAAATGGTTACTAGAGCAAGATAAAAAGATGAAAGAAAGCGGAAAGGAAG gtcacctgtgaaagatacaaactagcacttgcttgtttattcctttatagCTGCATGTTGCTGAGCACCCTGCAGGACATCTGGTCCTCAAATGGCTACTAGAGCAAGATAAAAAGATGAAAGAATGCGGAAAGAAAGgtaagggctatttgcctaagaattgggaagtttactgattagttcaggcc Alignment from Exonerate_protein2genome CTTCATGTTGCTGAGCATCCTGCAGGACATCTGGTTCTCAAATGGTTACTAGAGCAAGATAAAAAGATGAAAGAAAGCGGAAAGGAAG gtcacctgtgaaagatacaaactagcacttgcttgtttattcctttatagCTGCATGTTGCTGAGCACCCTGCAGGACATCTGGTCCTCAAATGGCTACTAGAGCAAGATAAAAAGATGAAAGAATGCGGAAAGAAAGgtaagggctatttgcctaagaattgggaagtttactgattagttcaggcc Alignment from Exonerate_coding2genome CTTCATGTTGCTGAGCATCCTGCAGGACATCTGGTTCTCAAATGGTTACTAGAGCAAGATAAAAAGATGAAAGAAAGCGGAAAGGAAG gtcacctgtgaaagatacaaactagcacttgcttgtttattcctttatagCTGCATGTTGCTGAGCACCCTGCAGGACATCTGGTCCTCAAATGGCTACTAGAGCAAGATAAAAAGATGAAAGAATGCGGAAAGAAAGgtaagggctatttgcctaagaattgggaagtttactgattagttcaggcc Alignment from GeneWise CTTCATGTTGCTGAGCATCCTGCAGGACATCTGGTTCTCAAATGGTTACTAGAGCAAGATAAAAAGATGAAAGAAAGCGGAAAGGAAG gtcacctgtgaaagatacaaactagcacttgcttgtttattcctttatagCTGCATGTTGCTGAGCACCCTGCAGGACATCTGGTCCTCAAATGGCTACTAGAGCAAGATAAAAAGATGAAAGAATGCGGAAAGAAAGgtaagggctatttgcctaagaattgggaagtttactgattagttcaggcc #### D19Bwg1357e_ID5838_14 --> 1 - 0 Original Alignment cAAGAAGGACACTGCAATCCGCCGGCGTGAGCTCTTGGAGTCCATCTCTCCAGCTTTGCTGAGCTACCTGCAAGGACACACTCAAGAGGTGGTGCTGGATAAGTCTGCATGTGTGCTGGTGTCTGACATGCTGGGATCTGCTACTGGAGATGTTCAGCCTGCTATGGATGCCATCGCCAGTTTGGCAGCAGCAGAACTGCATCCTGGTGGCAAGGACGGAGAG agaaaaaaacatcttctttgctgagctccattttttttttttaattttagcAAAAAGGACACTGCAATCCGCCAGCATGAGCTCTTGGAGTCCATCTCTCCAGCCTTACTGAGTTATCTTCAAGGACACACTCAAGAGGTGGTACTAGATAAATCAGCAAGTGTGCTAGTGTCAGACATGCTAGGATCAGCTCCTGGAGATATTCAGCCTGCTATGGATGCAATTGCCAGTTTAGCGACAGCGGAATTGCATCCTGGAGGGAAGGATGGAGAGgtgagtcactgtgactataatggtaaactcaagggtaactagagtttctt Alignment from CESAR cAAGAAGGACACTGCAATCCGCCGGCGTGAGCTCTTGGAGTCCATCTCTCCAGCTTTGCTGAGCTACCTGCAAGGACACACTCAAGAGGTGGTGCTGGATAAGTCTGCATGTGTGCTGGTGTCTGACATGCTGGGATCTGCTACTGGAGATGTTCAGCCTGCTATGGATGCCATCGCCAGTTTGGCAGCAGCAGAACTGCATCCTGGTGGCAAGGACGGAGAG agaaaaaaacatcttctttgctgagctccattttttttttttaattttagcAAAAAGGACACTGCAATCCGCCAGCATGAGCTCTTGGAGTCCATCTCTCCAGCCTTACTGAGTTATCTTCAAGGACACACTCAAGAGGTGGTACTAGATAAATCAGCAAGTGTGCTAGTGTCAGACATGCTAGGATCAGCTCCTGGAGATATTCAGCCTGCTATGGATGCAATTGCCAGTTTAGCGACAGCGGAATTGCATCCTGGAGGGAAGGATGGAGAGgtgagtcactgtgactataatggtaaactcaagggtaactagagtttctt Alignment from Spaln_aa2Genome CAAGAAGGACACTGCAATCCGCCGGCGTGAGCTCTTGGAGTCCATCTCTCCAGCTTTGCTGAGCTACCTGCAAGGACACACTCAAGAGGTGGTGCTGGATAAGTCTGCATGTGTGCTGGTGTCTGACATGCTGGGATCTGCTACTGGAGATGTTCAGCCTGCTATGGATGCCATCGCCAGTTTGGCAGCAGCAGAACTGCATCCTGGTGGCAAGGACGGAGAG agaaaaaaacatcttctttgctgagctccattttttttttttaattttagCAAAAAGGACACTGCAATCCGCCAGCATGAGCTCTTGGAGTCCATCTCTCCAGCCTTACTGAGTTATCTTCAAGGACACACTCAAGAGGTGGTACTAGATAAATCAGCAAGTGTGCTAGTGTCAGACATGCTAGGATCAGCTCCTGGAGATATTCAGCCTGCTATGGATGCAATTGCCAGTTTAGCGACAGCGGAATTGCATCCTGGAGGGAAGGATGGAGAGgtgagtcactgtgactataatggtaaactcaagggtaactagagtttctt Alignment from Spaln_nt2Genome CAAGAAGGACACTGCAATCCGCCGGCGTGAGCTCTTGGAGTCCATCTCTCCAGCTTTGCTGAGCTACCTGCAAGGACACACTCAAGAGGTGGTGCTGGATAAGTCTGCATGTGTGCTGGTGTCTGACATGCTGGGATCTGCTACTGGAGATGTTCAGCCTGCTATGGATGCCATCGCCAGTTTGGCAGCAGCAGAACTGCATCCTGGTGGCAAGGACGGAGAG agaaaaaaacatcttctttgctgagctccattttttttttttaattttagCAAAAAGGACACTGCAATCCGCCAGCATGAGCTCTTGGAGTCCATCTCTCCAGCCTTACTGAGTTATCTTCAAGGACACACTCAAGAGGTGGTACTAGATAAATCAGCAAGTGTGCTAGTGTCAGACATGCTAGGATCAGCTCCTGGAGATATTCAGCCTGCTATGGATGCAATTGCCAGTTTAGCGACAGCGGAATTGCATCCTGGAGGGAAGGATGGAGAGgtgagtcactgtgactataatggtaaactcaagggtaactagagtttctt Alignment from Pairagon CAAGAAGGACACTGCAATCCGCCGGCGTGAGCTCTTGGAGTCCATCTCTCCAGCTTTGCTGAGCTACCTGCAAGGACACACTCAAGAGGTGGTGCTGGATAAGTCTGCATGTGTGCTGGTGTCTGACATGCTGGGATCTGCTACTGGAGATGTTCAGCCTGCTATGGATGCCATCGCCAGTTTGGCAGCAGCAGAACTGCATCCTGGTGGCAAGGACGGAGAG agaaaaaaacatcttctttgctgagctccattttttttttttaattttagCAAAAAGGACACTGCAATCCGCCAGCATGAGCTCTTGGAGTCCATCTCTCCAGCCTTACTGAGTTATCTTCAAGGACACACTCAAGAGGTGGTACTAGATAAATCAGCAAGTGTGCTAGTGTCAGACATGCTAGGATCAGCTCCTGGAGATATTCAGCCTGCTATGGATGCAATTGCCAGTTTAGCGACAGCGGAATTGCATCCTGGAGGGAAGGATGGAGAGgtgagtcactgtgactataatggtaaactcaagggtaactagagtttctt Alignment from Exonerate_protein2genome CAAGAAGGACACTGCAATCCGCCGGCGTGAGCTCTTGGAGTCCATCTCTCCAGCTTTGCTGAGCTACCTGCAAGGACACACTCAAGAGGTGGTGCTGGATAAGTCTGCATGTGTGCTGGTGTCTGACATGCTGGGATCTGCTACTGGAGATGTTCAGCCTGCTATGGATGCCATCGCCAGTTTGGCAGCAGCAGAACTGCATCCTGGTGGCAAGGACGGAGAG agaaaaaaacatcttctttgctgagctccattttttttttttaattttagCAAAAAGGACACTGCAATCCGCCAGCATGAGCTCTTGGAGTCCATCTCTCCAGCCTTACTGAGTTATCTTCAAGGACACACTCAAGAGGTGGTACTAGATAAATCAGCAAGTGTGCTAGTGTCAGACATGCTAGGATCAGCTCCTGGAGATATTCAGCCTGCTATGGATGCAATTGCCAGTTTAGCGACAGCGGAATTGCATCCTGGAGGGAAGGATGGAGAGgtgagtcactgtgactataatggtaaactcaagggtaactagagtttctt Alignment from Exonerate_coding2genome CAAGAAGGACACTGCAATCCGCCGGCGTGAGCTCTTGGAGTCCATCTCTCCAGCTTTGCTGAGCTACCTGCAAGGACACACTCAAGAGGTGGTGCTGGATAAGTCTGCATGTGTGCTGGTGTCTGACATGCTGGGATCTGCTACTGGAGATGTTCAGCCTGCTATGGATGCCATCGCCAGTTTGGCAGCAGCAGAACTGCATCCTGGTGGCAAGGACGGAGAG agaaaaaaacatcttctttgctgagctccattttttttttttaattttagCAAAAAGGACACTGCAATCCGCCAGCATGAGCTCTTGGAGTCCATCTCTCCAGCCTTACTGAGTTATCTTCAAGGACACACTCAAGAGGTGGTACTAGATAAATCAGCAAGTGTGCTAGTGTCAGACATGCTAGGATCAGCTCCTGGAGATATTCAGCCTGCTATGGATGCAATTGCCAGTTTAGCGACAGCGGAATTGCATCCTGGAGGGAAGGATGGAGAGgtgagtcactgtgactataatggtaaactcaagggtaactagagtttctt Alignment from GeneWise CAAGAAGGACACTGCAATCCGCCGGCGTGAGCTCTTGGAGTCCATCTCTCCAGCTTTGCTGAGCTACCTGCAAGGACACACTCAAGAGGTGGTGCTGGATAAGTCTGCATGTGTGCTGGTGTCTGACATGCTGGGATCTGCTACTGGAGATGTTCAGCCTGCTATGGATGCCATCGCCAGTTTGGCAGCAGCAGAACTGCATCCTGGTGGCAAGGACGGAGAG agaaaaaaacatcttctttgctgagctccattttttttttttaattttagCAAAAAGGACACTGCAATCCGCCAGCATGAGCTCTTGGAGTCCATCTCTCCAGCCTTACTGAGTTATCTTCAAGGACACACTCAAGAGGTGGTACTAGATAAATCAGCAAGTGTGCTAGTGTCAGACATGCTAGGATCAGCTCCTGGAGATATTCAGCCTGCTATGGATGCAATTGCCAGTTTAGCGACAGCGGAATTGCATCCTGGAGGGAAGGATGGAGAGgtgagtcactgtgactataatggtaaactcaagggtaactagagtttctt #### D19Bwg1357e_ID5841_11 --> 0 - 0 Original Alignment GACAGGAAAGTGATCGTGAAAACGATGAAGACGTATGTGGAGAAGGTTGCCAAT attgtgtgggagactcacgggctacatgtatttatatacttctccaacagGACAGGAAAGTTATTGTGAAAACAATGAAGACATATGTGGAGAAGGTTGCCAATgtgagtggtgcagctggatgtgccccaggatctattagcttattcatgtg Alignment from CESAR GACAGGAAAGTGATCGTGAAAACGATGAAGACGTATGTGGAGAAGGTTGCCAAT attgtgtgggagactcacgggctacatgtatttatatacttctccaacagGACAGGAAAGTTATTGTGAAAACAATGAAGACATATGTGGAGAAGGTTGCCAATgtgagtggtgcagctggatgtgccccaggatctattagcttattcatgtg Alignment from Spaln_aa2Genome GACAGGAAAGTGATCGTGAAAACGATGAAGACGTATGTGGAGAAGGTTGCCAAT attgtgtgggagactcacgggctacatgtatttatatacttctccaacagGACAGGAAAGTTATTGTGAAAACAATGAAGACATATGTGGAGAAGGTTGCCAATgtgagtggtgcagctggatgtgccccaggatctattagcttattcatgtg Alignment from Spaln_nt2Genome GACAGGAAAGTGATCGTGAAAACGATGAAGACGTATGTGGAGAAGGTTGCCAAT attgtgtgggagactcacgggctacatgtatttatatacttctccaacagGACAGGAAAGTTATTGTGAAAACAATGAAGACATATGTGGAGAAGGTTGCCAATgtgagtggtgcagctggatgtgccccaggatctattagcttattcatgtg Alignment from Pairagon GACAGGAAAGTGATCGTGAAAACGATGAAGACGTATGTGGAGAAGGTTGCCAAT attgtgtgggagactcacgggctacatgtatttatatacttctccaacagGACAGGAAAGTTATTGTGAAAACAATGAAGACATATGTGGAGAAGGTTGCCAATgtgagtggtgcagctggatgtgccccaggatctattagcttattcatgtg Alignment from Exonerate_protein2genome GACAGGAAAGTGATCGTGAAAACGATGAAGACGTATGTGGAGAAGGTTGCCAAT attgtgtgggagactcacgggctacatgtatttatatacttctccaacagGACAGGAAAGTTATTGTGAAAACAATGAAGACATATGTGGAGAAGGTTGCCAATgtgagtggtgcagctggatgtgccccaggatctattagcttattcatgtg Alignment from Exonerate_coding2genome GACAGGAAAGTGATCGTGAAAACGATGAAGACGTATGTGGAGAAGGTTGCCAAT attgtgtgggagactcacgggctacatgtatttatatacttctccaacagGACAGGAAAGTTATTGTGAAAACAATGAAGACATATGTGGAGAAGGTTGCCAATgtgagtggtgcagctggatgtgccccaggatctattagcttattcatgtg Alignment from GeneWise GACAGGAAAGTGATCGTGAAAACGATGAAGACGTATGTGGAGAAGGTTGCCAAT attgtgtgggagactcacgggctacatgtatttatatacttctccaacagGACAGGAAAGTTATTGTGAAAACAATGAAGACATATGTGGAGAAGGTTGCCAATgtgagtggtgcagctggatgtgccccaggatctattagcttattcatgtg #### D19Bwg1357e_ID5847_5 --> 0 - 1 Original Alignment ATCGCCTTTGCACATGACTCGACGCGCGTGATCCAGTGCTTCATTCAGTATGGGAACGAGGAGCAGAGGAAGCAGGCTTTCCAAGAGTTGCAAg ccaatgaagaaacagtgtaaacactaaatctccttctgtttctgctccagATTGCCTTTACACATGACTCCACACGGGTAATTAAGTGCTTTATTCAGTATGGAAATGAGGAGCAGAGGAAGCAAGCTTTTCAAGAGTTGCAAggtgagctaagtaccatgtttttccacactaagcatcattttaatctcctg Alignment from CESAR ATCGCCTTTGCACATGACTCGACGCGCGTGATCCAGTGCTTCATTCAGTATGGGAACGAGGAGCAGAGGAAGCAGGCTTTCCAAGAGTTGCAAg ccaatgaagaaacagtgtaaacactaaatctccttctgtttctgctccagATTGCCTTTACACATGACTCCACACGGGTAATTAAGTGCTTTATTCAGTATGGAAATGAGGAGCAGAGGAAGCAAGCTTTTCAAGAGTTGCAAggtgagctaagtaccatgtttttccacactaagcatcattttaatctcctg Alignment from Spaln_aa2Genome ATCGCCTTTGCACATGACTCGACGCGCGTGATCCAGTGCTTCATTCAGTATGGGAACGAGGAGCAGAGGAAGCAGGCTTTCCAAGAGTTGCAAG ccaatgaagaaacagtgtaaacactaaatctccttctgtttctgctccagATTGCCTTTACACATGACTCCACACGGGTAATTAAGTGCTTTATTCAGTATGGAAATGAGGAGCAGAGGAAGCAAGCTTTTCAAGAGTTGCAAGgtgagctaagtaccatgtttttccacactaagcatcattttaatctcctg Alignment from Spaln_nt2Genome ATCGCCTTTGCACATGACTCGACGCGCGTGATCCAGTGCTTCATTCAGTATGGGAACGAGGAGCAGAGGAAGCAGGCTTTCCAAGAGTTGCAAG ccaatgaagaaacagtgtaaacactaaatctccttctgtttctgctccagATTGCCTTTACACATGACTCCACACGGGTAATTAAGTGCTTTATTCAGTATGGAAATGAGGAGCAGAGGAAGCAAGCTTTTCAAGAGTTGCAAGgtgagctaagtaccatgtttttccacactaagcatcattttaatctcctg Alignment from Pairagon ATCGCCTTTGCACATGACTCGACGCGCGTGATCCAGTGCTTCATTCAGTATGGGAACGAGGAGCAGAGGAAGCAGGCTTTCCAAGAGTTGCAAG ccaatgaagaaacagtgtaaacactaaatctccttctgtttctgctccagATTGCCTTTACACATGACTCCACACGGGTAATTAAGTGCTTTATTCAGTATGGAAATGAGGAGCAGAGGAAGCAAGCTTTTCAAGAGTTGCAAGgtgagctaagtaccatgtttttccacactaagcatcattttaatctcctg Alignment from Exonerate_protein2genome ATCGCCTTTGCACATGACTCGACGCGCGTGATCCAGTGCTTCATTCAGTATGGGAACGAGGAGCAGAGGAAGCAGGCTTTCCAAGAGTTGCAAG ccaatgaagaaacagtgtaaacactaaatctccttctgtttctgctccagATTGCCTTTACACATGACTCCACACGGGTAATTAAGTGCTTTATTCAGTATGGAAATGAGGAGCAGAGGAAGCAAGCTTTTCAAGAGTTGCAAGgtgagctaagtaccatgtttttccacactaagcatcattttaatctcctg Alignment from Exonerate_coding2genome ATCGCCTTTGCACATGACTCGACGCGCGTGATCCAGTGCTTCATTCAGTATGGGAACGAGGAGCAGAGGAAGCAGGCTTTCCAAGAGTTGCAAG ccaatgaagaaacagtgtaaacactaaatctccttctgtttctgctccagATTGCCTTTACACATGACTCCACACGGGTAATTAAGTGCTTTATTCAGTATGGAAATGAGGAGCAGAGGAAGCAAGCTTTTCAAGAGTTGCAAGgtgagctaagtaccatgtttttccacactaagcatcattttaatctcctg Alignment from GeneWise ATCGCCTTTGCACATGACTCGACGCGCGTGATCCAGTGCTTCATTCAGTATGGGAACGAGGAGCAGAGGAAGCAGGCTTTCCAAGAGTTGCAAG ccaatgaagaaacagtgtaaacactaaatctccttctgtttctgctccagATTGCCTTTACACATGACTCCACACGGGTAATTAAGTGCTTTATTCAGTATGGAAATGAGGAGCAGAGGAAGCAAGCTTTTCAAGAGTTGCAAGgtgagctaagtaccatgtttttccacactaagcatcattttaatctcctg #### D19Ertd737e_ID13188_5 --> 0 - 0 Original Alignment TCAGGCCTTGAGAAGAGGATTGACCAGGCTGTGGAGGAGTGGGATGTTGAGAAGGCGGAGGAGCTCAGCAACCAGCTGGCTACTCGAGAG taaatataggttagatctcttataaacttgctctcccgtctctgttgcagTTGGGACTTGAAAAGAGAGTTGATCAGGCAGTAGAAGAGTGGGATGCTGAGAAGGCCGAAGAACTCAGCAACCAGCTGGCTACTCGAGAGgtaaagcagacacccccttgccaactgtcatgatactatttcctcattat Alignment from CESAR TCAGGCCTTGAGAAGAGGATTGACCAGGCTGTGGAGGAGTGGGATGTTGAGAAGGCGGAGGAGCTCAGCAACCAGCTGGCTACTCGAGAG taaatataggttagatctcttataaacttgctctcccgtctctgttgcagTTGGGACTTGAAAAGAGAGTTGATCAGGCAGTAGAAGAGTGGGATGCTGAGAAGGCCGAAGAACTCAGCAACCAGCTGGCTACTCGAGAGgtaaagcagacacccccttgccaactgtcatgatactatttcctcattat Alignment from Spaln_aa2Genome TCAGGCCTTGAGAAGAGGATTGACCAGGCTGTGGAGGAGTGGGATGTTGAGAAGGCGGAGGAGCTCAGCAACCAGCTGGCTACTCGAGAG taaatataggttagatctcttataaacttgctctcccgtctctgttgcagTTGGGACTTGAAAAGAGAGTTGATCAGGCAGTAGAAGAGTGGGATGCTGAGAAGGCCGAAGAACTCAGCAACCAGCTGGCTACTCGAGAGgtaaagcagacacccccttgccaactgtcatgatactatttcctcattat Alignment from Spaln_nt2Genome TCAGGCCTTGAGAAGAGGATTGACCAGGCTGTGGAGGAGTGGGATGTTGAGAAGGCGGAGGAGCTCAGCAACCAGCTGGCTACTCGAGAG taaatataggttagatctcttataaacttgctctcccgtctctgttgcagTTGGGACTTGAAAAGAGAGTTGATCAGGCAGTAGAAGAGTGGGATGCTGAGAAGGCCGAAGAACTCAGCAACCAGCTGGCTACTCGAGAGgtaaagcagacacccccttgccaactgtcatgatactatttcctcattat Alignment from Pairagon TCAGGCCTTGAGAAGAGGATTGACCAGGCTGTGGAGGAGTGGGATGTTGAGAAGGCGGAGGAGCTCAGCAACCAGCTGGCTACTCGAGAG taaatataggttagatctcttataaacttgctctcccgtctctgttgcagTTGGGACTTGAAAAGAGAGTTGATCAGGCAGTAGAAGAGTGGGATGCTGAGAAGGCCGAAGAACTCAGCAACCAGCTGGCTACTCGAGAGgtaaagcagacacccccttgccaactgtcatgatactatttcctcattat Alignment from Exonerate_protein2genome TCAGGCCTTGAGAAGAGGATTGACCAGGCTGTGGAGGAGTGGGATGTTGAGAAGGCGGAGGAGCTCAGCAACCAGCTGGCTACTCGAGAG taaatataggttagatctcttataaacttgctctcccgtctctgttgcagTTGGGACTTGAAAAGAGAGTTGATCAGGCAGTAGAAGAGTGGGATGCTGAGAAGGCCGAAGAACTCAGCAACCAGCTGGCTACTCGAGAGgtaaagcagacacccccttgccaactgtcatgatactatttcctcattat Alignment from Exonerate_coding2genome TCAGGCCTTGAGAAGAGGATTGACCAGGCTGTGGAGGAGTGGGATGTTGAGAAGGCGGAGGAGCTCAGCAACCAGCTGGCTACTCGAGAG taaatataggttagatctcttataaacttgctctcccgtctctgttgcagTTGGGACTTGAAAAGAGAGTTGATCAGGCAGTAGAAGAGTGGGATGCTGAGAAGGCCGAAGAACTCAGCAACCAGCTGGCTACTCGAGAGgtaaagcagacacccccttgccaactgtcatgatactatttcctcattat Alignment from GeneWise TCAGGCCTTGAGAAGAGGATTGACCAGGCTGTGGAGGAGTGGGATGTTGAGAAGGCGGAGGAGCTCAGCAACCAGCTGGCTACTCGAGAG taaatataggttagatctcttataaacttgctctcccgtctctgttgcagTTGGGACTTGAAAAGAGAGTTGATCAGGCAGTAGAAGAGTGGGATGCTGAGAAGGCCGAAGAACTCAGCAACCAGCTGGCTACTCGAGAGgtaaagcagacacccccttgccaactgtcatgatactatttcctcattat #### Dagla_ID2752_18 --> 0 - 2 Original Alignment GTGCTGGAGAATTACAACAAAGGAAAGACAGCGCTGCTGTCTGCTGCAAAGGTCATGGTGAGCCCCACCGAGGTAGACCTCACTCCCGAGCTCATCTTCCAGCAACAGCCGTTGCCCACGGGCCCACCTCTGCCCACTGGCCTGGCCCTGGAGCTG---CCTGCCACAGAGCATCGCAACAGCAGTGTCag tcttgagaagccactgtgctggcttggtcttggggttggggtttattcagGTGCTGGAGAATTACAATAAAGGCAAAATTACACTGCTCTCTACTGAAAAAGTCATGGTAAGCTCCACTGAGGTAGACCTCACTCCAGAGCTCATATTCCAGCAAAAGCCATTGACCACAGGACCACCTCTGCCTACTGACACATCCCTG---CCACTGCCAGCCACAGAGCATCGCAACACTAGTGTTaggtaaaactggggttaccaatcagccactagagtggatttgccacaatcat Alignment from CESAR GTGCTGGAGAATTACAACAAAGGAAAGACAGCGCTGCTGTCTGCTGCAAAGGTCATGGTGAGCCCCACCGAGGTAGACCTCACTCCCGAGCTCATCTTCCAGCAACAGCCGTTGCCCACGGGCCCACCTCTGCCCACTGGCCTGGCCCTGGAGCTGCCTGCCACAGAGCATCGCAACAGCAGTGTCag tcttgagaagccactgtgctggcttggtcttggggttggggtttattcagGTGCTGGAGAATTACAATAAAGGCAAAATTACACTGCTCTCTACTGAAAAAGTCATGGTAAGCTCCACTGAGGTAGACCTCACTCCAGAGCTCATATTCCAGCAAAAGCCATTGACCACAGGACCACCTCTGCCTACTGACACATCCCTGCCACTGCCAGCCACAGAGCATCGCAACACTAGTGTTaggtaaaactggggttaccaatcagccactagagtggatttgccacaatcat Alignment from Spaln_aa2Genome GTGCTGGAGAATTACAACAAAGGAAAGACAGCGCTGCTGTCTGCTGCAAAGGTCATGGTGAGCCCCACCGAGGTAGACCTCACTCCCGAGCTCATCTTCCAGCAACAGCCGTTGCCCACGGGCCCACCTCTGCCCACTGGCCTGGCCCTGGAGCTGCCTGCCACAGAGCATCGCAACAGCAGTGTCAG tcttgagaagccactgtgctggcttggtcttggggttggggtttattcagGTGCTGGAGAATTACAATAAAGGCAAAATTACACTGCTCTCTACTGAAAAAGTCATGGTAAGCTCCACTGAGGTAGACCTCACTCCAGAGCTCATATTCCAGCAAAAGCCATTGACCACAGGACCACCTCTGCCTACTGACACATCCCTGCCACTGCCAGCCACAGAGCATCGCAACACTAGTGTTAGgtaaaactggggttaccaatcagccactagagtggatttgccacaatcat Alignment from Spaln_nt2Genome GTGCTGGAGAATTACAACAAAGGAAAGACAGCGCTGCTGTCTGCTGCAAAGGTCATGGTGAGCCCCACCGAGGTAGACCTCACTCCCGAGCTCATCTTCCAGCAACAGCCGTTGCCCACGGGCCCACCTCTGCCCACTGGCCTGGCCCTGGAGCTGCCTGCCACAGAGCATCGCAACAGCAGTGTCAG tcttgagaagccactgtgctggcttggtcttggggttggggtttattcagGTGCTGGAGAATTACAATAAAGGCAAAATTACACTGCTCTCTACTGAAAAAGTCATGGTAAGCTCCACTGAGGTAGACCTCACTCCAGAGCTCATATTCCAGCAAAAGCCATTGACCACAGGACCACCTCTGCCTACTGACACATCCCTGCCACTGCCAGCCACAGAGCATCGCAACACTAGTGTTAGgtaaaactggggttaccaatcagccactagagtggatttgccacaatcat Alignment from Pairagon GTGCTGGAGAATTACAACAAAGGAAAGACAGCGCTGCTGTCTGCTGCAAAGGTCATGGTGAGCCCCACCGAGGTAGACCTCACTCCCGAGCTCATCTTCCAGCAACAGCCGTTGCCCACGGGCCCACCTCTGCCCACTGGCCTGGCCCTGGAGCTGCCTGCCACAGAGCATCGCAACAGCAGTGTCAG tcttgagaagccactgtgctggcttggtcttggggttggggtttattcagGTGCTGGAGAATTACAATAAAGGCAAAATTACACTGCTCTCTACTGAAAAAGTCATGGTAAGCTCCACTGAGGTAGACCTCACTCCAGAGCTCATATTCCAGCAAAAGCCATTGACCACAGGACCACCTCTGCCTACTGACACATCCCTGCCACTGCCAGCCACAGAGCATCGCAACACTAGTGTTAGgtaaaactggggttaccaatcagccactagagtggatttgccacaatcat Alignment from Exonerate_protein2genome GTGCTGGAGAATTACAACAAAGGAAAGACAGCGCTGCTGTCTGCTGCAAAGGTCATGGTGAGCCCCACCGAGGTAGACCTCACTCCCGAGCTCATCTTCCAGCAACAGCCGTTGCCCACGGGCCCACCTCTGCCCACTGGCCTGGCCCTGGAGCTGCCTGCCACAGAGCATCGCAACAGCAGTGTCAG tcttgagaagccactgtgctggcttggtcttggggttggggtttattcagGTGCTGGAGAATTACAATAAAGGCAAAATTACACTGCTCTCTACTGAAAAAGTCATGGTAAGCTCCACTGAGGTAGACCTCACTCCAGAGCTCATATTCCAGCAAAAGCCATTGACCACAGGACCACCTCTGCCTACTGACACATCCCTGCCACTGCCAGCCACAGAGCATCGCAACACTAGTGTTAGgtaaaactggggttaccaatcagccactagagtggatttgccacaatcat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGCTGGAGAATTACAACAAAGGAAAGACAGCGCTGCTGTCTGCTGCAAAGGTCATGGTGAGCCCCACCGAGGTAGACCTCACTCCCGAGCTCATCTTCCAGCAACAGCCGTTGCCCACGGGCCCACCTCTGCCCACTGGCCTGGCCCTGGAGCTGCCTGCCACAGAGCATCGCAACAGCAGTGTCAG tcttgagaagccactgtgctggcttggtcttggggttggggtttattcagGTGCTGGAGAATTACAATAAAGGCAAAATTACACTGCTCTCTACTGAAAAAGTCATGGTAAGCTCCACTGAGGTAGACCTCACTCCAGAGCTCATATTCCAGCAAAAGCCATTGACCACAGGACCACCTCTGCCTACTGACACATCCCTGCCACTGCCAGCCACAGAGCATCGCAACACTAGTGTTAGgtaaaactggggttaccaatcagccactagagtggatttgccacaatcat #### Dagla_ID2755_15 --> 1 - 0 Original Alignment gATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaataaagatgttagcaaagaaggacacggcagcctgtctcttcctgtaggGTTGGCCTTTCCCAACTAGAAGGATTCTGCCGGCAGCTTTTAGATGTCTTGCAACGAAGTACTAAACCCAAGgtaagtactgttcagatctacagcaccaaaaaagccctgtgactcccatg Alignment from CESAR gATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaataaagatgttagcaaagaaggacacggcagcctgtctcttcctgtaggGTTGGCCTTTCCCAACTAGAAGGATTCTGCCGGCAGCTTTTAGATGTCTTGCAACGAAGTACTAAACCCAAGgtaagtactgttcagatctacagcaccaaaaaagccctgtgactcccatg Alignment from Spaln_aa2Genome GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaataaagatgttagcaaagaaggacacggcagcctgtctcttcctgtagGGTTGGCCTTTCCCAACTAGAAGGATTCTGCCGGCAGCTTTTAGATGTCTTGCAACGAAGTACTAAACCCAAGgtaagtactgttcagatctacagcaccaaaaaagccctgtgactcccatg Alignment from Spaln_nt2Genome GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaataaagatgttagcaaagaaggacacggcagcctgtctcttcctgtagGGTTGGCCTTTCCCAACTAGAAGGATTCTGCCGGCAGCTTTTAGATGTCTTGCAACGAAGTACTAAACCCAAGgtaagtactgttcagatctacagcaccaaaaaagccctgtgactcccatg Alignment from Pairagon GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaataaagatgttagcaaagaaggacacggcagcctgtctcttcctgtagGGTTGGCCTTTCCCAACTAGAAGGATTCTGCCGGCAGCTTTTAGATGTCTTGCAACGAAGTACTAAACCCAAGgtaagtactgttcagatctacagcaccaaaaaagccctgtgactcccatg Alignment from Exonerate_protein2genome GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaataaagatgttagcaaagaaggacacggcagcctgtctcttcctgtagGGTTGGCCTTTCCCAACTAGAAGGATTCTGCCGGCAGCTTTTAGATGTCTTGCAACGAAGTACTAAACCCAAGgtaagtactgttcagatctacagcaccaaaaaagccctgtgactcccatg Alignment from Exonerate_coding2genome GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaataaagatgttagcaaagaaggacacggcagcctgtctcttcctgtagGGTTGGCCTTTCCCAACTAGAAGGATTCTGCCGGCAGCTTTTAGATGTCTTGCAACGAAGTACTAAACCCAAGgtaagtactgttcagatctacagcaccaaaaaagccctgtgactcccatg Alignment from GeneWise GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaataaagatgttagcaaagaaggacacggcagcctgtctcttcctgtagGGTTGGCCTTTCCCAACTAGAAGGATTCTGCCGGCAGCTTTTAGATGTCTTGCAACGAAGTACTAAACCCAAGgtaagtactgttcagatctacagcaccaaaaaagccctgtgactcccatg #### Dagla_ID2756_14 --> 1 - 2 Original Alignment tGAGGATGCTATGGAATACTCCAAAGAGTTTGTGACTGCTGTGGTTCTGGGCAAAGACCTTGTCCCCag tcatattgtgatatgctgaagattctctccccctcctatgtctactacagcGAGGATGCTATGGAATACTCAAAAGAATTTGTGACTGCTGTAGTTCTGGGTAAAGACCTTGTTCCAaggtaaggtctacactttgatctcatctcaacccatacttcagcaaccgcgt Alignment from CESAR tGAGGATGCTATGGAATACTCCAAAGAGTTTGTGACTGCTGTGGTTCTGGGCAAAGACCTTGTCCCCag tcatattgtgatatgctgaagattctctccccctcctatgtctactacagcGAGGATGCTATGGAATACTCAAAAGAATTTGTGACTGCTGTAGTTCTGGGTAAAGACCTTGTTCCAaggtaaggtctacactttgatctcatctcaacccatacttcagcaaccgcgt Alignment from Spaln_aa2Genome TGAGGATGCTATGGAATACTCCAAAGAGTTTGTGACTGCTGTGGTTCTGGGCAAAGACCTTGTCCCCAG tcatattgtgatatgctgaagattctctccccctcctatgtctactacagCGAGGATGCTATGGAATACTCAAAAGAATTTGTGACTGCTGTAGTTCTGGGTAAAGACCTTGTTCCAAGgtaaggtctacactttgatctcatctcaacccatacttcagcaaccgcgt Alignment from Spaln_nt2Genome TGAGGATGCTATGGAATACTCCAAAGAGTTTGTGACTGCTGTGGTTCTGGGCAAAGACCTTGTCCCCAG tcatattgtgatatgctgaagattctctccccctcctatgtctactacagCGAGGATGCTATGGAATACTCAAAAGAATTTGTGACTGCTGTAGTTCTGGGTAAAGACCTTGTTCCAAGgtaaggtctacactttgatctcatctcaacccatacttcagcaaccgcgt Alignment from Pairagon TGAGGATGCTATGGAATACTCCAAAGAGTTTGTGACTGCTGTGGTTCTGGGCAAAGACCTTGTCCCCAG tcatattgtgatatgctgaagattctctccccctcctatgtctactacagCGAGGATGCTATGGAATACTCAAAAGAATTTGTGACTGCTGTAGTTCTGGGTAAAGACCTTGTTCCAAGgtaaggtctacactttgatctcatctcaacccatacttcagcaaccgcgt Alignment from Exonerate_protein2genome TGAGGATGCTATGGAATACTCCAAAGAGTTTGTGACTGCTGTGGTTCTGGGCAAAGACCTTGTCCCCAG tcatattgtgatatgctgaagattctctccccctcctatgtctactacagCGAGGATGCTATGGAATACTCAAAAGAATTTGTGACTGCTGTAGTTCTGGGTAAAGACCTTGTTCCAAGgtaaggtctacactttgatctcatctcaacccatacttcagcaaccgcgt Alignment from Exonerate_coding2genome TGAGGATGCTATGGAATACTCCAAAGAGTTTGTGACTGCTGTGGTTCTGGGCAAAGACCTTGTCCCCAG tcatattgtgatatgctgaagattctctccccctcctatgtctactacagCGAGGATGCTATGGAATACTCAAAAGAATTTGTGACTGCTGTAGTTCTGGGTAAAGACCTTGTTCCAAGgtaaggtctacactttgatctcatctcaacccatacttcagcaaccgcgt Alignment from GeneWise TGAGGATGCTATGGAATACTCCAAAGAGTTTGTGACTGCTGTGGTTCTGGGCAAAGACCTTGTCCCCAG tcatattgtgatatgctgaagattctctccccctcctatgtctactacagCGAGGATGCTATGGAATACTCAAAAGAATTTGTGACTGCTGTAGTTCTGGGTAAAGACCTTGTTCCAAGgtaaggtctacactttgatctcatctcaacccatacttcagcaaccgcgt #### Dagla_ID2757_13 --> 0 - 2 Original Alignment GGCCGTGGAACCAAACACTATGGCCTGATTGTGGTAGGCCACTCCTTGGGAGCAGGCACAGCCGCCATCCTCTCCTTCCTCCTGCGCCCCCAGTACCCGACCCTCAAGTGCTTCGCTTACTCCCCACCAGGAGGCCTGCTAag ataaaaacttagtgtgcctgttattgcactttaacttctctgtgttacagGGGCGTGGTACCAAACATTATGGCCTAATCGTGGTAGGCCACTCCTTAGGCGCAGGCACAGCTGCCATCCTCTCCTTCCTTCTGCGCCCTCAGTACCCAACCCTTAAGTGCTTTGCTTATTCCCCACCAGGAGGGCTGCTAaggtaagcggtaagtggatttgggcaaagtcataatgccctaatgacaacag Alignment from CESAR GGCCGTGGAACCAAACACTATGGCCTGATTGTGGTAGGCCACTCCTTGGGAGCAGGCACAGCCGCCATCCTCTCCTTCCTCCTGCGCCCCCAGTACCCGACCCTCAAGTGCTTCGCTTACTCCCCACCAGGAGGCCTGCTAag ataaaaacttagtgtgcctgttattgcactttaacttctctgtgttacagGGGCGTGGTACCAAACATTATGGCCTAATCGTGGTAGGCCACTCCTTAGGCGCAGGCACAGCTGCCATCCTCTCCTTCCTTCTGCGCCCTCAGTACCCAACCCTTAAGTGCTTTGCTTATTCCCCACCAGGAGGGCTGCTAaggtaagcggtaagtggatttgggcaaagtcataatgccctaatgacaacag Alignment from Spaln_aa2Genome GGCCGTGGAACCAAACACTATGGCCTGATTGTGGTAGGCCACTCCTTGGGAGCAGGCACAGCCGCCATCCTCTCCTTCCTCCTGCGCCCCCAGTACCCGACCCTCAAGTGCTTCGCTTACTCCCCACCAGGAGGCCTGCTAAG ataaaaacttagtgtgcctgttattgcactttaacttctctgtgttacagGGGCGTGGTACCAAACATTATGGCCTAATCGTGGTAGGCCACTCCTTAGGCGCAGGCACAGCTGCCATCCTCTCCTTCCTTCTGCGCCCTCAGTACCCAACCCTTAAGTGCTTTGCTTATTCCCCACCAGGAGGGCTGCTAAGgtaagcggtaagtggatttgggcaaagtcataatgccctaatgacaacag Alignment from Spaln_nt2Genome GGCCGTGGAACCAAACACTATGGCCTGATTGTGGTAGGCCACTCCTTGGGAGCAGGCACAGCCGCCATCCTCTCCTTCCTCCTGCGCCCCCAGTACCCGACCCTCAAGTGCTTCGCTTACTCCCCACCAGGAGGCCTGCTAAG ataaaaacttagtgtgcctgttattgcactttaacttctctgtgttacagGGGCGTGGTACCAAACATTATGGCCTAATCGTGGTAGGCCACTCCTTAGGCGCAGGCACAGCTGCCATCCTCTCCTTCCTTCTGCGCCCTCAGTACCCAACCCTTAAGTGCTTTGCTTATTCCCCACCAGGAGGGCTGCTAAGgtaagcggtaagtggatttgggcaaagtcataatgccctaatgacaacag Alignment from Pairagon GGCCGTGGAACCAAACACTATGGCCTGATTGTGGTAGGCCACTCCTTGGGAGCAGGCACAGCCGCCATCCTCTCCTTCCTCCTGCGCCCCCAGTACCCGACCCTCAAGTGCTTCGCTTACTCCCCACCAGGAGGCCTGCTAAG ataaaaacttagtgtgcctgttattgcactttaacttctctgtgttacagGGGCGTGGTACCAAACATTATGGCCTAATCGTGGTAGGCCACTCCTTAGGCGCAGGCACAGCTGCCATCCTCTCCTTCCTTCTGCGCCCTCAGTACCCAACCCTTAAGTGCTTTGCTTATTCCCCACCAGGAGGGCTGCTAAGgtaagcggtaagtggatttgggcaaagtcataatgccctaatgacaacag Alignment from Exonerate_protein2genome GGCCGTGGAACCAAACACTATGGCCTGATTGTGGTAGGCCACTCCTTGGGAGCAGGCACAGCCGCCATCCTCTCCTTCCTCCTGCGCCCCCAGTACCCGACCCTCAAGTGCTTCGCTTACTCCCCACCAGGAGGCCTGCTAAG ataaaaacttagtgtgcctgttattgcactttaacttctctgtgttacagGGGCGTGGTACCAAACATTATGGCCTAATCGTGGTAGGCCACTCCTTAGGCGCAGGCACAGCTGCCATCCTCTCCTTCCTTCTGCGCCCTCAGTACCCAACCCTTAAGTGCTTTGCTTATTCCCCACCAGGAGGGCTGCTAAGgtaagcggtaagtggatttgggcaaagtcataatgccctaatgacaacag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGCCGTGGAACCAAACACTATGGCCTGATTGTGGTAGGCCACTCCTTGGGAGCAGGCACAGCCGCCATCCTCTCCTTCCTCCTGCGCCCCCAGTACCCGACCCTCAAGTGCTTCGCTTACTCCCCACCAGGAGGCCTGCTAAG ataaaaacttagtgtgcctgttattgcactttaacttctctgtgttacagGGGCGTGGTACCAAACATTATGGCCTAATCGTGGTAGGCCACTCCTTAGGCGCAGGCACAGCTGCCATCCTCTCCTTCCTTCTGCGCCCTCAGTACCCAACCCTTAAGTGCTTTGCTTATTCCCCACCAGGAGGGCTGCTAAGgtaagcggtaagtggatttgggcaaagtcataatgccctaatgacaacag #### Dagla_ID2758_12 --> 0 - 0 Original Alignment GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacaattgctctgatgttgaaggtctatggcgttcttcccttctcctagGACATGGTACTGGCAGCTGAGTACATAAAGAAGAAGCTGGAACAGGAGATGGTCTTGTCCCAGGCTTTTGGGCGAGACCTGgtgagctttgaactattcccaaacctgcactaatctataccactgttact Alignment from CESAR GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacaattgctctgatgttgaaggtctatggcgttcttcccttctcctagGACATGGTACTGGCAGCTGAGTACATAAAGAAGAAGCTGGAACAGGAGATGGTCTTGTCCCAGGCTTTTGGGCGAGACCTGgtgagctttgaactattcccaaacctgcactaatctataccactgttact Alignment from Spaln_aa2Genome GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacaattgctctgatgttgaaggtctatggcgttcttcccttctcctagGACATGGTACTGGCAGCTGAGTACATAAAGAAGAAGCTGGAACAGGAGATGGTCTTGTCCCAGGCTTTTGGGCGAGACCTGgtgagctttgaactattcccaaacctgcactaatctataccactgttact Alignment from Spaln_nt2Genome GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacaattgctctgatgttgaaggtctatggcgttcttcccttctcctagGACATGGTACTGGCAGCTGAGTACATAAAGAAGAAGCTGGAACAGGAGATGGTCTTGTCCCAGGCTTTTGGGCGAGACCTGgtgagctttgaactattcccaaacctgcactaatctataccactgttact Alignment from Pairagon GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacaattgctctgatgttgaaggtctatggcgttcttcccttctcctagGACATGGTACTGGCAGCTGAGTACATAAAGAAGAAGCTGGAACAGGAGATGGTCTTGTCCCAGGCTTTTGGGCGAGACCTGgtgagctttgaactattcccaaacctgcactaatctataccactgttact Alignment from Exonerate_protein2genome GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacaattgctctgatgttgaaggtctatggcgttcttcccttctcctagGACATGGTACTGGCAGCTGAGTACATAAAGAAGAAGCTGGAACAGGAGATGGTCTTGTCCCAGGCTTTTGGGCGAGACCTGgtgagctttgaactattcccaaacctgcactaatctataccactgttact Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacaattgctctgatgttgaaggtctatggcgttcttcccttctcctagGACATGGTACTGGCAGCTGAGTACATAAAGAAGAAGCTGGAACAGGAGATGGTCTTGTCCCAGGCTTTTGGGCGAGACCTGgtgagctttgaactattcccaaacctgcactaatctataccactgttact #### Dagla_ID2769_2 --> 1 - 1 Original Alignment gTTTGTAATCCTGTCTGTGGTGCTCTTCGGCTTGGTCTATAACCCACACGAGGCCTGCTCCCTGAACCTGGTGGACCACGGCCGAGGCTACCTGGGCATCCTTCTGAGCTGTATGATTGCCGAAATGGCTATCATCTGGCTGAGCATGCGTGGGGGCATCCTCTACACAGAACCCCGGGACTCCATGCAGTACGTGCTCTACGTGCGCCTGg ttaatgagctaatcaaagcctactctagagactctaaaatttatctttaggTTCATAATCTTGTCAGTGTTGCTCCTGGGTTTGGTTTACAACCCACATGAGGCTTGCTCCCTTAACCTTGTGGATCATGGCAGAGCATACCTGGGCATCCTACTGAGCTGTATGATCGCAGAAATGGCTATCATCTGGCTGAGCATTTGTGGGGGTATTCTCTATACAGAACCCCGTGACTCTATGCAGTATGTGCTCTACATCCGTCTGggtgagtgacccctacgggtgtgagagctcataaagggtctcatcctcagc Alignment from CESAR gTTTGTAATCCTGTCTGTGGTGCTCTTCGGCTTGGTCTATAACCCACACGAGGCCTGCTCCCTGAACCTGGTGGACCACGGCCGAGGCTACCTGGGCATCCTTCTGAGCTGTATGATTGCCGAAATGGCTATCATCTGGCTGAGCATGCGTGGGGGCATCCTCTACACAGAACCCCGGGACTCCATGCAGTACGTGCTCTACGTGCGCCTGg ttaatgagctaatcaaagcctactctagagactctaaaatttatctttaggTTCATAATCTTGTCAGTGTTGCTCCTGGGTTTGGTTTACAACCCACATGAGGCTTGCTCCCTTAACCTTGTGGATCATGGCAGAGCATACCTGGGCATCCTACTGAGCTGTATGATCGCAGAAATGGCTATCATCTGGCTGAGCATTTGTGGGGGTATTCTCTATACAGAACCCCGTGACTCTATGCAGTATGTGCTCTACATCCGTCTGggtgagtgacccctacgggtgtgagagctcataaagggtctcatcctcagc Alignment from Spaln_aa2Genome GTTTGTAATCCTGTCTGTGGTGCTCTTCGGCTTGGTCTATAACCCACACGAGGCCTGCTCCCTGAACCTGGTGGACCACGGCCGAGGCTACCTGGGCATCCTTCTGAGCTGTATGATTGCCGAAATGGCTATCATCTGGCTGAGCATGCGTGGGGGCATCCTCTACACAGAACCCCGGGACTCCATGCAGTACGTGCTCTACGTGCGCCTGG ttaatgagctaatcaaagcctactctagagactctaaaatttatctttagGTTCATAATCTTGTCAGTGTTGCTCCTGGGTTTGGTTTACAACCCACATGAGGCTTGCTCCCTTAACCTTGTGGATCATGGCAGAGCATACCTGGGCATCCTACTGAGCTGTATGATCGCAGAAATGGCTATCATCTGGCTGAGCATTTGTGGGGGTATTCTCTATACAGAACCCCGTGACTCTATGCAGTATGTGCTCTACATCCGTCTGGgtgagtgacccctacgggtgtgagagctcataaagggtctcatcctcagc Alignment from Spaln_nt2Genome GTTTGTAATCCTGTCTGTGGTGCTCTTCGGCTTGGTCTATAACCCACACGAGGCCTGCTCCCTGAACCTGGTGGACCACGGCCGAGGCTACCTGGGCATCCTTCTGAGCTGTATGATTGCCGAAATGGCTATCATCTGGCTGAGCATGCGTGGGGGCATCCTCTACACAGAACCCCGGGACTCCATGCAGTACGTGCTCTACGTGCGCCTGG ttaatgagctaatcaaagcctactctagagactctaaaatttatctttagGTTCATAATCTTGTCAGTGTTGCTCCTGGGTTTGGTTTACAACCCACATGAGGCTTGCTCCCTTAACCTTGTGGATCATGGCAGAGCATACCTGGGCATCCTACTGAGCTGTATGATCGCAGAAATGGCTATCATCTGGCTGAGCATTTGTGGGGGTATTCTCTATACAGAACCCCGTGACTCTATGCAGTATGTGCTCTACATCCGTCTGGgtgagtgacccctacgggtgtgagagctcataaagggtctcatcctcagc Alignment from Pairagon GTTTGTAATCCTGTCTGTGGTGCTCTTCGGCTTGGTCTATAACCCACACGAGGCCTGCTCCCTGAACCTGGTGGACCACGGCCGAGGCTACCTGGGCATCCTTCTGAGCTGTATGATTGCCGAAATGGCTATCATCTGGCTGAGCATGCGTGGGGGCATCCTCTACACAGAACCCCGGGACTCCATGCAGTACGTGCTCTACGTGCGCCTGG ttaatgagctaatcaaagcctactctagagactctaaaatttatctttagGTTCATAATCTTGTCAGTGTTGCTCCTGGGTTTGGTTTACAACCCACATGAGGCTTGCTCCCTTAACCTTGTGGATCATGGCAGAGCATACCTGGGCATCCTACTGAGCTGTATGATCGCAGAAATGGCTATCATCTGGCTGAGCATTTGTGGGGGTATTCTCTATACAGAACCCCGTGACTCTATGCAGTATGTGCTCTACATCCGTCTGGgtgagtgacccctacgggtgtgagagctcataaagggtctcatcctcagc Alignment from Exonerate_protein2genome GTTTGTAATCCTGTCTGTGGTGCTCTTCGGCTTGGTCTATAACCCACACGAGGCCTGCTCCCTGAACCTGGTGGACCACGGCCGAGGCTACCTGGGCATCCTTCTGAGCTGTATGATTGCCGAAATGGCTATCATCTGGCTGAGCATGCGTGGGGGCATCCTCTACACAGAACCCCGGGACTCCATGCAGTACGTGCTCTACGTGCGCCTGG ttaatgagctaatcaaagcctactctagagactctaaaatttatctttagGTTCATAATCTTGTCAGTGTTGCTCCTGGGTTTGGTTTACAACCCACATGAGGCTTGCTCCCTTAACCTTGTGGATCATGGCAGAGCATACCTGGGCATCCTACTGAGCTGTATGATCGCAGAAATGGCTATCATCTGGCTGAGCATTTGTGGGGGTATTCTCTATACAGAACCCCGTGACTCTATGCAGTATGTGCTCTACATCCGTCTGGgtgagtgacccctacgggtgtgagagctcataaagggtctcatcctcagc Alignment from Exonerate_coding2genome GTTTGTAATCCTGTCTGTGGTGCTCTTCGGCTTGGTCTATAACCCACACGAGGCCTGCTCCCTGAACCTGGTGGACCACGGCCGAGGCTACCTGGGCATCCTTCTGAGCTGTATGATTGCCGAAATGGCTATCATCTGGCTGAGCATGCGTGGGGGCATCCTCTACACAGAACCCCGGGACTCCATGCAGTACGTGCTCTACGTGCGCCTGG ttaatgagctaatcaaagcctactctagagactctaaaatttatctttagGTTCATAATCTTGTCAGTGTTGCTCCTGGGTTTGGTTTACAACCCACATGAGGCTTGCTCCCTTAACCTTGTGGATCATGGCAGAGCATACCTGGGCATCCTACTGAGCTGTATGATCGCAGAAATGGCTATCATCTGGCTGAGCATTTGTGGGGGTATTCTCTATACAGAACCCCGTGACTCTATGCAGTATGTGCTCTACATCCGTCTGGgtgagtgacccctacgggtgtgagagctcataaagggtctcatcctcagc Alignment from GeneWise GTTTGTAATCCTGTCTGTGGTGCTCTTCGGCTTGGTCTATAACCCACACGAGGCCTGCTCCCTGAACCTGGTGGACCACGGCCGAGGCTACCTGGGCATCCTTCTGAGCTGTATGATTGCCGAAATGGCTATCATCTGGCTGAGCATGCGTGGGGGCATCCTCTACACAGAACCCCGGGACTCCATGCAGTACGTGCTCTACGTGCGCCTGG ttaatgagctaatcaaagcctactctagagactctaaaatttatctttagGTTCATAATCTTGTCAGTGTTGCTCCTGGGTTTGGTTTACAACCCACATGAGGCTTGCTCCCTTAACCTTGTGGATCATGGCAGAGCATACCTGGGCATCCTACTGAGCTGTATGATCGCAGAAATGGCTATCATCTGGCTGAGCATTTGTGGGGGTATTCTCTATACAGAACCCCGTGACTCTATGCAGTATGTGCTCTACATCCGTCTGGgtgagtgacccctacgggtgtgagagctcataaagggtctcatcctcagc #### Dak_ID2898_15 --> 1 - 0 Original Alignment gTATGGAAAGGCTGCACCAGGAGACAGGACAATG aattggcacttgtgtaagcacttttagaccatggctatgtctgtctgtaggTATGGAAAGGCTGCACCAGGAGACAGGACAATGgtaagattactttccccctttgggccctcctatggtgctggggtctggga Alignment from CESAR gTATGGAAAGGCTGCACCAGGAGACAGGACAATG aattggcacttgtgtaagcacttttagaccatggctatgtctgtctgtaggTATGGAAAGGCTGCACCAGGAGACAGGACAATGgtaagattactttccccctttgggccctcctatggtgctggggtctggcc Alignment from Spaln_aa2Genome GTATGGAAAGGCTGCACCAGGAGACAGGACAATG aattggcacttgtgtaagcacttttagaccatggctatgtctgtctgtagGTATGGAAAGGCTGCACCAGGAGACAGGACAATGgtaagattactttccccctttgggccctcctatggtgctggggtctggga Alignment from Spaln_nt2Genome GTATGGAAAGGCTGCACCAGGAGACAGGACAATG aattggcacttgtgtaagcacttttagaccatggctatgtctgtctgtagGTATGGAAAGGCTGCACCAGGAGACAGGACAATGgtaagattactttccccctttgggccctcctatggtgctggggtctggga Alignment from Pairagon GTATGGAAAGGCTGCACCAGGAGACAGGACAATG aattggcacttgtgtaagcacttttagaccatggctatgtctgtctgtagGTATGGAAAGGCTGCACCAGGAGACAGGACAATGgtaagattactttccccctttgggccctcctatggtgctggggtctggga Alignment from Exonerate_protein2genome GTATGGAAAGGCTGCACCAGGAGACAGGACAATG aattggcacttgtgtaagcacttttagaccatggctatgtctgtctgtagGTATGGAAAGGCTGCACCAGGAGACAGGACAATGgtaagattactttccccctttgggccctcctatggtgctggggtctggga Alignment from Exonerate_coding2genome aattggcacttgtgtaagcacttttagaccatggctatgtctgtctgtaggtatggaaaggctgcaccaggagacaggacaatggtaagattactttccccctttgggccctcctatggtgctggggtctggga Alignment from GeneWise GTATGGAAAGGCTGCACCAGGAGACAGGACAATG aattggcacttgtgtaagcacttttagaccatggctatgtctgtctgtagGTATGGAAAGGCTGCACCAGGAGACAGGACAATGgtaagattactttccccctttgggccctcctatggtgctggggtctggga #### Dak_ID2910_3 --> 2 - 1 Original Alignment gtTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAg tgcagctttgggacaactatgcatacctcttctgaacatctctttcctaggtTTTATTGGCAAAGGGATGCTAACAGGTATTATTGTAGGGTTGGTGTTTGCCTCTCCTCCTGTGGGCAGTATCTTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACGggtaagttgtgcttgtacagggttggataggttgtggaggggagcacattg Alignment from CESAR gtTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAg tgcagctttgggacaactatgcatacctcttctgaacatctctttcctaggtTTTATTGGCAAAGGGATGCTAACAGGTATTATTGTAGGGTTGGTGTTTGCCTCTCCTCCTGTGGGCAGTATCTTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACGggtaagttgtgcttgtacagggttggataggttgtggaggggagcacattg Alignment from Spaln_aa2Genome GTTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAG tgcagctttgggacaactatgcatacctcttctgaacatctctttcctagGTTTTATTGGCAAAGGGATGCTAACAGGTATTATTGTAGGGTTGGTGTTTGCCTCTCCTCCTGTGGGCAGTATCTTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACGGgtaagttgtgcttgtacagggttggataggttgtggaggggagcacattg Alignment from Spaln_nt2Genome GTTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAG tgcagctttgggacaactatgcatacctcttctgaacatctctttcctagGTTTTATTGGCAAAGGGATGCTAACAGGTATTATTGTAGGGTTGGTGTTTGCCTCTCCTCCTGTGGGCAGTATCTTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACGGgtaagttgtgcttgtacagggttggataggttgtggaggggagcacattg Alignment from Pairagon GTTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAG tgcagctttgggacaactatgcatacctcttctgaacatctctttcctagGTTTTATTGGCAAAGGGATGCTAACAGGTATTATTGTAGGGTTGGTGTTTGCCTCTCCTCCTGTGGGCAGTATCTTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACGGgtaagttgtgcttgtacagggttggataggttgtggaggggagcacattg Alignment from Exonerate_protein2genome GTTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAG tgcagctttgggacaactatgcatacctcttctgaacatctctttcctagGTTTTATTGGCAAAGGGATGCTAACAGGTATTATTGTAGGGTTGGTGTTTGCCTCTCCTCCTGTGGGCAGTATCTTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACGGgtaagttgtgcttgtacagggttggataggttgtggaggggagcacattg Alignment from Exonerate_coding2genome GTTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAG tgcagctttgggacaactatgcatacctcttctgaacatctctttcctagGTTTTATTGGCAAAGGGATGCTAACAGGTATTATTGTAGGGTTGGTGTTTGCCTCTCCTCCTGTGGGCAGTATCTTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACGGgtaagttgtgcttgtacagggttggataggttgtggaggggagcacattg Alignment from GeneWise GTTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAG tgcagctttgggacaactatgcatacctcttctgaacatctctttcctagGTTTTATTGGCAAAGGGATGCTAACAGGTATTATTGTAGGGTTGGTGTTTGCCTCTCCTCCTGTGGGCAGTATCTTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACGGgtaagttgtgcttgtacagggttggataggttgtggaggggagcacattg #### Dclre1a_ID12123_4 --> 0 - 2 Original Alignment ATAACAGGCAATCTGTTGAAGAAGAAGCTTCGAGTGCAAGAGCAATACATCCGTCAGTTGCCGATGGACACCGAGTGTGTCGTGGACAGCGTCAAGGTGGTTTTGCTGGATGCCAATca gtactggcctaaagcatgtggtaaagtgtggtgctctttttctctattagATAACAGGCAATCTATTGAAGAAGAAGCTGCGAGTACAAAAACAATACATGCATCAATTGCCAATGGACACAGAGTGTGTAGTGGACAGTGTCAAAGTTGTCCTGCTGGATGCCAACcagtacctatgaagcctaacatcattggcttaactagttcctttaggcagca Alignment from CESAR ATAACAGGCAATCTGTTGAAGAAGAAGCTTCGAGTGCAAGAGCAATACATCCGTCAGTTGCCGATGGACACCGAGTGTGTCGTGGACAGCGTCAAGGTGGTTTTGCTGGATGCCAATca gtactggcctaaagcatgtggtaaagtgtggtgctctttttctctattagATAACAGGCAATCTATTGAAGAAGAAGCTGCGAGTACAAAAACAATACATGCATCAATTGCCAATGGACACAGAGTGTGTAGTGGACAGTGTCAAAGTTGTCCTGCTGGATGCCAACcagtacctatgaagcctaacatcattggcttaactagttcctttaggcagca Alignment from Spaln_aa2Genome ATAACAGGCAATCTGTTGAAGAAGAAGCTTCGAGTGCAAGAGCAATACATCCGTCAGTTGCCGATGGACACCGAGTGTGTCGTGGACAGCGTCAAGGTGGTTTTGCTGGATGCCAATCA gtactggcctaaagcatgtggtaaagtgtggtgctctttttctctattagATAACAGGCAATCTATTGAAGAAGAAGCTGCGAGTACAAAAACAATACATGCATCAATTGCCAATGGACACAGAGTGTGTAGTGGACAGTGTCAAAGTTGTCCTGCTGGATGCCAACCAgtacctatgaagcctaacatcattggcttaactagttcctttaggcagca Alignment from Spaln_nt2Genome ATAACAGGCAATCTGTTGAAGAAGAAGCTTCGAGTGCAAGAGCAATACATCCGTCAGTTGCCGATGGACACCGAGTGTGTCGTGGACAGCGTCAAGGTGGTTTTGCTGGATGCCAATCA gtactggcctaaagcatgtggtaaagtgtggtgctctttttctctattagATAACAGGCAATCTATTGAAGAAGAAGCTGCGAGTACAAAAACAATACATGCATCAATTGCCAATGGACACAGAGTGTGTAGTGGACAGTGTCAAAGTTGTCCTGCTGGATGCCAACCAgtacctatgaagcctaacatcattggcttaactagttcctttaggcagca Alignment from Pairagon ATAACAGGCAATCTGTTGAAGAAGAAGCTTCGAGTGCAAGAGCAATACATCCGTCAGTTGCCGATGGACACCGAGTGTGTCGTGGACAGCGTCAAGGTGGTTTTGCTGGATGCCAATCA gtactggcctaaagcatgtggtaaagtgtggtgctctttttctctattagATAACAGGCAATCTATTGAAGAAGAAGCTGCGAGTACAAAAACAATACATGCATCAATTGCCAATGGACACAGAGTGTGTAGTGGACAGTGTCAAAGTTGTCCTGCTGGATGCCAACCAgtacctatgaagcctaacatcattggcttaactagttcctttaggcagca Alignment from Exonerate_protein2genome ATAACAGGCAATCTGTTGAAGAAGAAGCTTCGAGTGCAAGAGCAATACATCCGTCAGTTGCCGATGGACACCGAGTGTGTCGTGGACAGCGTCAAGGTGGTTTTGCTGGATGCCAATCA gtactggcctaaagcatgtggtaaagtgtggtgctctttttctctattagATAACAGGCAATCTATTGAAGAAGAAGCTGCGAGTACAAAAACAATACATGCATCAATTGCCAATGGACACAGAGTGTGTAGTGGACAGTGTCAAAGTTGTCCTGCTGGATGCCAACCAgtacctatgaagcctaacatcattggcttaactagttcctttaggcagca Alignment from Exonerate_coding2genome ATAACAGGCAATCTGTTGAAGAAGAAGCTTCGAGTGCAAGAGCAATACATCCGTCAGTTGCCGATGGACACCGAGTGTGTCGTGGACAGCGTCAAGGTGGTTTTGCTGGATGCCAATCA gtactggcctaaagcatgtggtaaagtgtggtgctctttttctctattagATAACAGGCAATCTATTGAAGAAGAAGCTGCGAGTACAAAAACAATACATGCATCAATTGCCAATGGACACAGAGTGTGTAGTGGACAGTGTCAAAGTTGTCCTGCTGGATGCCAACCAgtacctatgaagcctaacatcattggcttaactagttcctttaggcagca Alignment from GeneWise ATAACAGGCAATCTGTTGAAGAAGAAGCTTCGAGTGCAAGAGCAATACATCCGTCAGTTGCCGATGGACACCGAGTGTGTCGTGGACAGCGTCAAGGTGGTTTTGCTGGATGCCAATCA gtactggcctaaagcatgtggtaaagtgtggtgctctttttctctattagATAACAGGCAATCTATTGAAGAAGAAGCTGCGAGTACAAAAACAATACATGCATCAATTGCCAATGGACACAGAGTGTGTAGTGGACAGTGTCAAAGTTGTCCTGCTGGATGCCAACCAgtacctatgaagcctaacatcattggcttaactagttcctttaggcagca #### Ddb1_ID2924_9 --> 0 - 0 Original Alignment CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tctgtttattgaggattctttagtctcattttctttgcctcttgaaatagCTCAATGTTGATAGCAATGAACAAGGGTCCTATGTAGTGGCAATGGAAACATTTACTAATTTGGGACCTATTGTAGATATGTTTGTGGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtgtgtggcacccctatgggtcatcccctatggctctgtgtttccgctca Alignment from CESAR CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tctgtttattgaggattctttagtctcattttctttgcctcttgaaatagCTCAATGTTGATAGCAATGAACAAGGGTCCTATGTAGTGGCAATGGAAACATTTACTAATTTGGGACCTATTGTAGATATGTTTGTGGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtgtgtggcacccctatgggtcatcccctatggctctgtgtttccgctca Alignment from Spaln_aa2Genome CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tctgtttattgaggattctttagtctcattttctttgcctcttgaaatagCTCAATGTTGATAGCAATGAACAAGGGTCCTATGTAGTGGCAATGGAAACATTTACTAATTTGGGACCTATTGTAGATATGTTTGTGGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtgtgtggcacccctatgggtcatcccctatggctctgtgtttccgctca Alignment from Spaln_nt2Genome CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tctgtttattgaggattctttagtctcattttctttgcctcttgaaatagCTCAATGTTGATAGCAATGAACAAGGGTCCTATGTAGTGGCAATGGAAACATTTACTAATTTGGGACCTATTGTAGATATGTTTGTGGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtgtgtggcacccctatgggtcatcccctatggctctgtgtttccgctca Alignment from Pairagon CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tctgtttattgaggattctttagtctcattttctttgcctcttgaaatagCTCAATGTTGATAGCAATGAACAAGGGTCCTATGTAGTGGCAATGGAAACATTTACTAATTTGGGACCTATTGTAGATATGTTTGTGGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtgtgtggcacccctatgggtcatcccctatggctctgtgtttccgctca Alignment from Exonerate_protein2genome CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tctgtttattgaggattctttagtctcattttctttgcctcttgaaatagCTCAATGTTGATAGCAATGAACAAGGGTCCTATGTAGTGGCAATGGAAACATTTACTAATTTGGGACCTATTGTAGATATGTTTGTGGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtgtgtggcacccctatgggtcatcccctatggctctgtgtttccgctca Alignment from Exonerate_coding2genome CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tctgtttattgaggattctttagtctcattttctttgcctcttgaaatagCTCAATGTTGATAGCAATGAACAAGGGTCCTATGTAGTGGCAATGGAAACATTTACTAATTTGGGACCTATTGTAGATATGTTTGTGGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtgtgtggcacccctatgggtcatcccctatggctctgtgtttccgctca Alignment from GeneWise CTCAATGTCGACAGCAACGAACAAGGCTCCTATGTAGTGGCCATGGAAACCTTTACCAATTTAGGACCCATTGTGGATATGTGTGTGGTGGACCTGGAGAGGCAGGGACAGGGTCAG tctgtttattgaggattctttagtctcattttctttgcctcttgaaatagCTCAATGTTGATAGCAATGAACAAGGGTCCTATGTAGTGGCAATGGAAACATTTACTAATTTGGGACCTATTGTAGATATGTTTGTGGTGGACCTGGAGAGGCAGGGACAGGGGCAGgtgtgtggcacccctatgggtcatcccctatggctctgtgtttccgctca #### Ddb1_ID2934_19 --> 0 - 1 Original Alignment GCCCTGTCCAGCAGCGTCAGCTCCAGCAAACTTTTCTCCAGCAGTACGGCTCCTCACGAGACCTCCTTTGGAGAA---GAAGTGGAGGTGCACAACCTCCTCATCATTGACCAGCACACCTTTGAAg ttttgatgggctgagtgtgttcttcttattgtatccatgctttcttttagGCTCTGTCTAGTAGCATCAGTTCCAGCAAACTTTTTTCCAGCAGTACAGCCCCTCATGAAACATCCTTTGGAGAAGAAGAA---GAGGTCCACAACCTCCTGATCAATGACCAGCACACATTTGAGggtgagctaggactctttaggattacatgcccagtcatagatccacaggtg Alignment from CESAR GCCCTGTCCAGCAGCGTCAGCTCCAGCAAACTTTTCTCCAGCAGTACGGCTCCTCACGAGACCTCCTTTGGAGAAGAAGTGGAGGTGCACAACCTCCTCATCATTGACCAGCACACCTTTGAAg ttttgatgggctgagtgtgttcttcttattgtatccatgctttcttttagGCTCTGTCTAGTAGCATCAGTTCCAGCAAACTTTTTTCCAGCAGTACAGCCCCTCATGAAACATCCTTTGGAGAAGAAGAAGAGGTCCACAACCTCCTGATCAATGACCAGCACACATTTGAGggtgagctaggactctttaggattacatgcccagtcatagatccacaggtg Alignment from Spaln_aa2Genome GCCCTGTCCAGCAGCGTCAGCTCCAGCAAACTTTTCTCCAGCAGTACGGCTCCTCACGAGACCTCCTTTGGAGAAGAAGTGGAGGTGCACAACCTCCTCATCATTGACCAGCACACCTTTGAAG ttttgatgggctgagtgtgttcttcttattgtatccatgctttcttttagGCTCTGTCTAGTAGCATCAGTTCCAGCAAACTTTTTTCCAGCAGTACAGCCCCTCATGAAACATCCTTTGGAGAAGAAGAAGAGGTCCACAACCTCCTGATCAATGACCAGCACACATTTGAGGgtgagctaggactctttaggattacatgcccagtcatagatccacaggtg Alignment from Spaln_nt2Genome GCCCTGTCCAGCAGCGTCAGCTCCAGCAAACTTTTCTCCAGCAGTACGGCTCCTCACGAGACCTCCTTTGGAGAAGAAGTGGAGGTGCACAACCTCCTCATCATTGACCAGCACACCTTTGAAG ttttgatgggctgagtgtgttcttcttattgtatccatgctttcttttagGCTCTGTCTAGTAGCATCAGTTCCAGCAAACTTTTTTCCAGCAGTACAGCCCCTCATGAAACATCCTTTGGAGAAGAAGAAGAGGTCCACAACCTCCTGATCAATGACCAGCACACATTTGAGGgtgagctaggactctttaggattacatgcccagtcatagatccacaggtg Alignment from Pairagon GCCCTGTCCAGCAGCGTCAGCTCCAGCAAACTTTTCTCCAGCAGTACGGCTCCTCACGAGACCTCCTTTGGAGAAGAAGTGGAGGTGCACAACCTCCTCATCATTGACCAGCACACCTTTGAAG ttttgatgggctgagtgtgttcttcttattgtatccatgctttcttttagGCTCTGTCTAGTAGCATCAGTTCCAGCAAACTTTTTTCCAGCAGTACAGCCCCTCATGAAACATCCTTTGGAGAAGAAGAAGAGGTCCACAACCTCCTGATCAATGACCAGCACACATTTGAGGgtgagctaggactctttaggattacatgcccagtcatagatccacaggtg Alignment from Exonerate_protein2genome GCCCTGTCCAGCAGCGTCAGCTCCAGCAAACTTTTCTCCAGCAGTACGGCTCCTCACGAGACCTCCTTTGGAGAAGAAGTGGAGGTGCACAACCTCCTCATCATTGACCAGCACACCTTTGAAG ttttgatgggctgagtgtgttcttcttattgtatccatgctttcttttagGCTCTGTCTAGTAGCATCAGTTCCAGCAAACTTTTTTCCAGCAGTACAGCCCCTCATGAAACATCCTTTGGAGAAGAAGAAGAGGTCCACAACCTCCTGATCAATGACCAGCACACATTTGAGGgtgagctaggactctttaggattacatgcccagtcatagatccacaggtg Alignment from Exonerate_coding2genome GCCCTGTCCAGCAGCGTCAGCTCCAGCAAACTTTTCTCCAGCAGTACGGCTCCTCACGAGACCTCCTTTGGAGAAGAAGTGGAGGTGCACAACCTCCTCATCATTGACCAGCACACCTTTGAAG ttttgatgggctgagtgtgttcttcttattgtatccatgctttcttttagGCTCTGTCTAGTAGCATCAGTTCCAGCAAACTTTTTTCCAGCAGTACAGCCCCTCATGAAACATCCTTTGGAGAAGAAGAAGAGGTCCACAACCTCCTGATCAATGACCAGCACACATTTGAGGgtgagctaggactctttaggattacatgcccagtcatagatccacaggtg Alignment from GeneWise GCCCTGTCCAGCAGCGTCAGCTCCAGCAAACTTTTCTCCAGCAGTACGGCTCCTCACGAGACCTCCTTTGGAGAAGAAGTGGAGGTGCACAACCTCCTCATCATTGACCAGCACACCTTTGAAG ttttgatgggctgagtgtgttcttcttattgtatccatgctttcttttagGCTCTGTCTAGTAGCATCAGTTCCAGCAAACTTTTTTCCAGCAGTACAGCCCCTCATGAAACATCCTTTGGAGAAGAAGAAGAGGTCCACAACCTCCTGATCAATGACCAGCACACATTTGAGGgtgagctaggactctttaggattacatgcccagtcatagatccacaggtg #### Dnajc4_ID1964_4 --> 1 - 2 Original Alignment cTCCTGGGAACCCCCCAACGCTCAATACTGGGCCCAGTTCCACAGTGTGAGGCCGCAGGGGCCGGAGTCAAGGAAGCAGCAGCGTAAACACAACCAGCGGGTCCTGGGGTACTGCCTCCTGCTCATGGTGGCAGGCATGGGCCTGCACTATGTTGCCTTCag aggacctaccatctactcacctttttctccttaactttgtctttctctagcTCCTGGGAACTACCCAACACTGAGTACTGGGCTAAGTTCCACAGTGTGAGACCACAGGGGTCAGAGTCAAGGAAGCAACACCATCAATACAACCAGCAAGTTCTC------GGTCTACTGCTCATGGTGGCAGGTATAGGATTGCACTATGTTGCCTTCaggtaagtccctttgtctccttggttcacggggttgtgggtcaagtttgaag Alignment from CESAR cTCCTGGGAACCCCCCAACGCTCAATACTGGGCCCAGTTCCACAGTGTGAGGCCGCAGGGGCCGGAGTCAAGGAAGCAGCAGCGTAAACACAACCAGCGGGTCCTGGGGTACTGCCTCCTGCTCATGGTGGCAGGCATGGGCCTGCACTATGTTGCCTTCag aggacctaccatctactcacctttttctccttaactttgtctttctctagcTCCTGGGAACTACCCAACACTGAGTACTGGGCTAAGTTCCACAGTGTGAGACCACAGGGGTCAGAGTCAAGGAAGCAACACCATCAATACAACCAGCAAGTTCTCGGT------CTACTGCTCATGGTGGCAGGTATAGGATTGCACTATGTTGCCTTCaggtaagtccctttgtctccttggttcacggggttgtgggtcaagtttgaag Alignment from Spaln_aa2Genome CTCCTGGGAACCCCCCAACGCTCAATACTGGGCCCAGTTCCACAGTGTGAGGCCGCAGGGGCCGGAGTCAAGGAAGCAGCAGCGTAAACACAACCAGCGGGTCCTGGGGTACTGCCTCCTGCTCATGGTGGCAGGCATGGGCCTGCACTATGTTGCCTTCAG aggacctaccatctactcacctttttctccttaactttgtctttctctagCTCCTGGGAACTACCCAACACTGAGTACTGGGCTAAGTTCCACAGTGTGAGACCACAGGGGTCAGAGTCAAGGAAGCAACACCATCAATACAACCAGCAAGTTCTCGGT------CTACTGCTCATGGTGGCAGGTATAGGATTGCACTATGTTGCCTTCAGgtaagtccctttgtctccttggttcacggggttgtgggtcaagtttgaag Alignment from Spaln_nt2Genome CTCCTGGGAACCCCCCAACGCTCAATACTGGGCCCAGTTCCACAGTGTGAGGCCGCAGGGGCCGGAGTCAAGGAAGCAGCAGCGTAAACACAACCAGCGGGTCCTGGGGTACTGCCTCCTGCTCATGGTGGCAGGCATGGGCCTGCACTATGTTGCCTTCAG aggacctaccatctactcacctttttctccttaactttgtctttctctagCTCCTGGGAACTACCCAACACTGAGTACTGGGCTAAGTTCCACAGTGTGAGACCACAGGGGTCAGAGTCAAGGAAGCAACACCATCAATACAACCAGCAAGTTCT------CGGTCTACTGCTCATGGTGGCAGGTATAGGATTGCACTATGTTGCCTTCAGgtaagtccctttgtctccttggttcacggggttgtgggtcaagtttgaag Alignment from Pairagon CTCCTGGGAACCCCCCAACGCTCAATACTGGGCCCAGTTCCACAGTGTGAGGCCGCAGGGGCCGGAGTCAAGGAAGCAGCAGCGTAAACACAACCAGCGGGTCCTGGGGTACTGCCTCCTGCTCATGGTGGCAGGCATGGGCCTGCACTATGTTGCCTTCAG aggacctaccatctactcacctttttctccttaactttgtctttctctagCTCCTGGGAACTACCCAACACTGAGTACTGGGCTAAGTTCCACAGTGTGAGACCACAGGGGTCAGAGTCAAGGAAGCAACACCATCAATACAACCAGCAAGTTCTCG------GTCTACTGCTCATGGTGGCAGGTATAGGATTGCACTATGTTGCCTTCAGgtaagtccctttgtctccttggttcacggggttgtgggtcaagtttgaag Alignment from Exonerate_protein2genome CTCCTGGGAACCCCCCAACGCTCAATACTGGGCCCAGTTCCACAGTGTGAGGCCGCAGGGGCCGGAGTCAAGGAAGCAGCAGCGTAAACACAACCAGCGGGTCCTGGGGTACTGCCTCCTGCTCATGGTGGCAGGCATGGGCCTGCACTATGTTGCCTTCAG aggacctaccatctactcacctttttctccttaactttgtctttctctagCTCCTGGGAACTACCCAACACTGAGTACTGGGCTAAGTTCCACAGTGTGAGACCACAGGGGTCAGAGTCAAGGAAGCAACACCATCAATACAACCAGCAAGTTCTCGGT------CTACTGCTCATGGTGGCAGGTATAGGATTGCACTATGTTGCCTTCAGgtaagtccctttgtctccttggttcacggggttgtgggtcaagtttgaag Alignment from Exonerate_coding2genome CTCCTGGGAACCCCCCAACGCTCAATACTGGGCCCAGTTCCACAGTGTGAGGCCGCAGGGGCCGGAGTCAAGGAAGCAGCAGCGTAAACACAACCAGCGGGTCCTGGGGTACTGCCTCCTGCTCATGGTGGCAGGCATGGGCCTGCACTATGTTGCCTTCAG aggacctaccatctactcacctttttctccttaactttgtctttctctagCTCCTGGGAACTACCCAACACTGAGTACTGGGCTAAGTTCCACAGTGTGAGACCACAGGGGTCAGAGTCAAGGAAGCAACACCATCAATACAACCAGCAAGTTCTCGGT------CTACTGCTCATGGTGGCAGGTATAGGATTGCACTATGTTGCCTTCAGgtaagtccctttgtctccttggttcacggggttgtgggtcaagtttgaag Alignment from GeneWise CTCCTGGGAACCCCCCAACGCTCAATACTGGGCCCAGTTCCACAGTGTGAGGCCGCAGGGGCCGGAGTCAAGGAAGCAGCAGCGTAAACACAACCAGCGGGTCCTGGGGTACTGCCTCCTGCTCATGGTGGCAGGCATGGGCCTGCACTATGTTGCCTTCAG aggacctaccatctactcacctttttctccttaactttgtctttctctagCTCCTGGGAACTACCCAACACTGAGTACTGGGCTAAGTTCCACAGTGTGAGACCACAGGGGTCAGAGTCAAGGAAGCAACACCATCAATACAACCAGCAAGTTCTCGGT------CTACTGCTCATGGTGGCAGGTATAGGATTGCACTATGTTGCCTTCAGgtaagtccctttgtctccttggttcacggggttgtgggtcaagtttgaag #### Dnmbp_ID8852_14 --> 2 - 0 Original Alignment tcACCAAAGGCTTTGTCTACAGCTCCTTCCTGAAGCCTTACAATCCTCGCTGCAGCCATTCGGATGCCTCCGTGGCCAGCCACTCCTCCACGGAGTCAGAGCACAGTGGCTCCTCC---------------------------CCCGGGTGCCATCGACAGAACAGCCACAGTGCCTTGACCTTCAACTCCAACAACATGACTGTGTCCTTCACCTCAGGACTTGCCCTAACGCAGCCTCAGGATGCATCTCCACTGAAGGACTGTGCCCACGAAACTCTCGCTGTGTCCTGGAACACAGGGCATCCAGAGACTGGACCTTCCACGTGCTCTTCCGACCCAGGCTTTTCCTGCCAGCGCAGGCTGGGGAACCCTGCAGATGGTGCCAGAGACATCAGCCAACCTGCTTCAACCTTGAGGGGCTGCCAGCGAGGCTCCCCGCATTCAGAAGTGGTCGGTTACTCTGTGCCAGGGCAAAATGACCAAGGCAGTGACTCTATAAAAGGCTCTGCAAGAGTCTGTCAGGCTCCAGAAGACAGAGACAGAGGGGTCGGGAGCAGCGAGACAGAGGGCAACCAG ccaatggcctacaattcgagatcattcttgcgttctctctgctgtcacagttGCCAGAGGCTTTCTGTACACTTCCTTCCTAAAGCCATACAATCCTCACTGCACTCATTCAGATGCCTCTGTAGCCTGTCACTCGTCTATGGAGTCAGAGCACGCAGGCTCTTCCCCAGGATGCCAACGACAGAACAGTCACCCTGGATGTCACCAACAAAAC------AGTGCTTCCACATTCAACTCAAACAATATGACAGTATCTTTCACCTCAGGCCTTGCTCTTATGCAGCCTCAGGATACCTCTCCATTAAAGGACTGTGCCCATGAGACACTCACTGTGTCCTGGAACATGGGGCACCCAAAGACTGGTCCTTCCACATGCTCCTCTGATCCAGGCTTT---TGCCAACGCAGGCTGGGGAACCCTGCAGATGGTGCCAGAGACATCAGCCAGCCTGCCTCAACTTTAAGGGGCTGTCAA---GGCTCA---CATTCAGAAGTAATCAGTTACTCTGTGTTGGGTCAGAATGACCAGGGCACAGATGCAATAAAAGGCTCAGCTATAGTTTGCCAGGCACCAGAAGACAGAGATAGAGAGGTTGTT---GGTGAGACCGATGGCAACCAAgttgccgcttaaagcacacaggcaggatgtagtgtcatccttcatggccc Alignment from CESAR tcACCAAAGGCTTTGTCTACAGCTCCTTCCTGAAGCCTTACAATCCTCGCTGCAGCCATTCGGATGCCTCCGTGGCCAGCCACTCCTCCACGGAGTCAGAGCACAGTGGCTCCTCCCCCGGGTGCCATCGACAGAACAGCCAC---------------------AGTGCCTTGACCTTCAACTCCAACAACATGACTGTGTCCTTCACCTCAGGACTTGCCCTAACGCAGCCTCAGGATGCATCTCCACTGAAGGACTGTGCCCACGAAACTCTCGCTGTGTCCTGGAACACAGGGCATCCAGAGACTGGACCTTCCACGTGCTCTTCCGACCCAGGCTTTTCCTGCCAGCGCAGGCTGGGGAACCCTGCAGATGGTGCCAGAGACATCAGCCAACCTGCTTCAACCTTGAGGGGCTGCCAGCGAGGCTCCCCGCATTCAGAAGTGGTCGGTTACTCTGTGCCAGGGCAAAATGACCAAGGCAGTGACTCTATAAAAGGCTCTGCAAGAGTCTGTCAGGCTCCAGAAGACAGAGACAGAGGGGTCGGGAGCAGCGAGACAGAGGGCAACCAG ccaatggcctacaattcgagatcattcttgcgttctctctgctgtcacagttGCCAGAGGCTTTCTGTACACTTCCTTCCTAAAGCCATACAATCCTCACTGCACTCATTCAGATGCCTCTGTAGCCTGTCACTCGTCTATGGAGTCAGAGCACGCAGGCTCTTCCCCAGGATGCCAACGACAGAACAGTCACCCTGGATGTCACCAACAAAACAGTGCTTCCACATTCAACTCAAACAATATGACAGTATCTTTCACCTCAGGCCTTGCTCTTATGCAGCCTCAGGATACCTCTCCATTAAAGGACTGTGCCCATGAGACACTCACTGTGTCCTGGAACATGGGGCACCCAAAGACTGGTCCTTCCACATGCTCCTCTGATCCAGGCTTT---TGCCAACGCAGGCTGGGGAACCCTGCAGATGGTGCCAGAGACATCAGCCAGCCTGCCTCAACTTTAAGGGGCTGTCAA---GGCTCA---CATTCAGAAGTAATCAGTTACTCTGTGTTGGGTCAGAATGACCAGGGCACAGATGCAATAAAAGGCTCAGCTATAGTTTGCCAGGCACCAGAAGACAGAGATAGAGAGGTT---GTTGGTGAGACCGATGGCAACCAAgttgccgcttaaagcacacaggcaggatgtagtgtcatccttcatggccc Alignment from Spaln_aa2Genome TCACCAAAGGCTTTGTCTACAGCTCCTTCCTGAAGCCTTACAATCCTCGCTGCAGCCATTCGGATGCCTCCGTGGCCAGCCACTCCTCCACGGAGTCAGAGCACAGTGGCTCCTCCCCCGGGTGCCATCGACAGAACAGCCAC---------------------AGTGCCTTGACCTTCAACTCCAACAACATGACTGTGTCCTTCACCTCAGGACTTGCCCTAACGCAGCCTCAGGATGCATCTCCACTGAAGGACTGTGCCCACGAAACTCTCGCTGTGTCCTGGAACACAGGGCATCCAGAGACTGGACCTTCCACGTGCTCTTCCGACCCAGGCTTTTCCTGCCAGCGCAGGCTGGGGAACCCTGCAGATGGTGCCAGAGACATCAGCCAACCTGCTTCAACCTTGAGGGGCTGCCAGCGAGGCTCCCCGCATTCAGAAGTGGTCGGTTACTCTGTGCCAGGGCAAAATGACCAAGGCAGTGACTCTATAAAAGGCTCTGCAAGAGTCTGTCAGGCTCCAGAAGACAGAGACAGAGGGGTCGGGAGCAGCGAGACAGAGGGCAACCAG ccaatggcctacaattcgagatcattcttgcgttctctctgctgtcacagTTGCCAGAGGCTTTCTGTACACTTCCTTCCTAAAGCCATACAATCCTCACTGCACTCATTCAGATGCCTCTGTAGCCTGTCACTCGTCTATGGAGTCAGAGCACGCAGGCTCTTCCCCAGGATGCCAACGACAGAACAGTCACCCTGGATGTCACCAACAAAACAGTGCTTCCACATTCAACTCAAACAATATGACAGTATCTTTCACCTCAGGCCTTGCTCTTATGCAGCCTCAGGATACCTCTCCATTAAAGGACTGTGCCCATGAGACACTCACTGTGTCCTGGAACATGGGGCACCCAAAGACTGGTCCTTCCACATGCTCCTCTGATCCAGGCTTT---TGCCAACGCAGGCTGGGGAACCCTGCAGATGGTGCCAGAGACATCAGCCAGCCTGCCTCAACTTTAAGGGGCTGTCAA------GGCTCACATTCAGAAGTAATCAGTTACTCTGTGTTGGGTCAGAATGACCAGGGCACAGATGCAATAAAAGGCTCAGCTATAGTTTGCCAGGCACCAGAAGACAGAGATAGAGAGGTT---GTTGGTGAGACCGATGGCAACCAAgttgccgcttaaagcacacaggcaggatgtagtgtcatccttcatggccc Alignment from Spaln_nt2Genome TCACCAAAGGCTTTGTCTACAGCTCCTTCCTGAAGCCTTACAATCCTCGCTGCAGCCATTCGGATGCCTCCGTGGCCAGCCACTCCTCCACGGAGTCAGAGCACAGTGGCTCCTCCCCCGGGTGCCATCGACAGAACAGCCAC---------------------AGTGCCTTGACCTTCAACTCCAACAACATGACTGTGTCCTTCACCTCAGGACTTGCCCTAACGCAGCCTCAGGATGCATCTCCACTGAAGGACTGTGCCCACGAAACTCTCGCTGTGTCCTGGAACACAGGGCATCCAGAGACTGGACCTTCCACGTGCTCTTCCGACCCAGGCTTTTCCTGCCAGCGCAGGCTGGGGAACCCTGCAGATGGTGCCAGAGACATCAGCCAACCTGCTTCAACCTTGAGGGGCTGCCAGCGAGGCTCCCCGCATTCAGAAGTGGTCGGTTACTCTGTGCCAGGGCAAAATGACCAAGGCAGTGACTCTATAAAAGGCTCTGCAAGAGTCTGTCAGGCTCCAGAAGACAGAGACAGAGGGGTCGGGAGCAGCGAGACAGAGGGCAACCAG ccaatggcctacaattcgagatcattcttgcgttctctctgctgtcacagTTGCCAGAGGCTTTCTGTACACTTCCTTCCTAAAGCCATACAATCCTCACTGCACTCATTCAGATGCCTCTGTAGCCTGTCACTCGTCTATGGAGTCAGAGCACGCAGGCTCTTCCCCAGGATGCCAACGACAGAACAGTCACCCTGGATGTCACCAACAAAACAGTGCTTCCACATTCAACTCAAACAATATGACAGTATCTTTCACCTCAGGCCTTGCTCTTATGCAGCCTCAGGATACCTCTCCATTAAAGGACTGTGCCCATGAGACACTCACTGTGTCCTGGAACATGGGGCACCCAAAGACTGGTCCTTCCACATGCTCCTCTGATCCAGGCTTT---TGCCAACGCAGGCTGGGGAACCCTGCAGATGGTGCCAGAGACATCAGCCAGCCTGCCTCAACTTTAAGGGGCTGTCA---AGGCT---CACATTCAGAAGTAATCAGTTACTCTGTGTTGGGTCAGAATGACCAGGGCACAGATGCAATAAAAGGCTCAGCTATAGTTTGCCAGGCACCAGAAGACAGAGATAGAGAGGTTG---TTGGTGAGACCGATGGCAACCAAgttgccgcttaaagcacacaggcaggatgtagtgtcatccttcatggccc Alignment from Pairagon TCACCAAAGGCTTTGTCTACAGCTCCTTCCTGAAGCCTTACAATCCTCGCTGCAGCCATTCGGATGCCTCCGTGGCCAGCCACTCCTCCACGGAGTCAGAGCACAGTGGCTCCTCCCCCGGGTGCCATCGACAGAACAGCC---------------------ACAGTGCCTTGACCTTCAACTCCAACAACATGACTGTGTCCTTCACCTCAGGACTTGCCCTAACGCAGCCTCAGGATGCATCTCCACTGAAGGACTGTGCCCACGAAACTCTCGCTGTGTCCTGGAACACAGGGCATCCAGAGACTGGACCTTCCACGTGCTCTTCCGACCCAGGCTTTTCCTGCCAGCGCAGGCTGGGGAACCCTGCAGATGGTGCCAGAGACATCAGCCAACCTGCTTCAACCTTGAGGGGCTGCCAGCGAGGCTCCCCGCATTCAGAAGTGGTCGGTTACTCTGTGCCAGGGCAAAATGACCAAGGCAGTGACTCTATAAAAGGCTCTGCAAGAGTCTGTCAGGCTCCAGAAGACAGAGACAGAGGGGTCGGGAGCAGCGAGACAGAGGGCAACCAG ccaatggcctacaattcgagatcattcttgcgttctctctgctgtcacagTTGCCAGAGGCTTTCTGTACACTTCCTTCCTAAAGCCATACAATCCTCACTGCACTCATTCAGATGCCTCTGTAGCCTGTCACTCGTCTATGGAGTCAGAGCACGCAGGCTCTTCCCCAGGATGCCAACGACAGAACAGTCACCCTGGATGTCACCAACAAAACAGTGCTTCCACATTCAACTCAAACAATATGACAGTATCTTTCACCTCAGGCCTTGCTCTTATGCAGCCTCAGGATACCTCTCCATTAAAGGACTGTGCCCATGAGACACTCACTGTGTCCTGGAACATGGGGCACCCAAAGACTGGTCCTTCCACATGCTCCTCTGATCCAGGCTTT---TGCCAACGCAGGCTGGGGAACCCTGCAGATGGTGCCAGAGACATCAGCCAGCCTGCCTCAACTTTAAGGGGCTGTCA---AGGCT---CACATTCAGAAGTAATCAGTTACTCTGTGTTGGGTCAGAATGACCAGGGCACAGATGCAATAAAAGGCTCAGCTATAGTTTGCCAGGCACCAGAAGACAGAGATAGAGAGGTTG---TTGGTGAGACCGATGGCAACCAAgttgccgcttaaagcacacaggcaggatgtagtgtcatccttcatggccc Alignment from Exonerate_protein2genome ccaatggcctacaattcgagatcattcttgcgttctctctgctgtcacagttgccagaggctttctgtacacttccttcctaaagccatacaatcctcactgcactcattcagatgcctctgtagcctgtcactcgtctatggagtcagagcacgcaggctcttccccaggatgccaacgacagaacagtcaccctggatgtcaccaacaaaacagtgcttccacattcaactcaaacaatatgacagtatctttcacctcaggccttgctcttatgcagcctcaggatacctctccattaaaggactgtgcccatgagacactcactgtgtcctggaacatggggcacccaaagactggtccttccacatgctcctctgatccaggcttttgccaacgcaggctggggaaccctgcagatggtgccagagacatcagccagcctgcctcaactttaaggggctgtcaaggctcacattcagaagtaatcagttactctgtgttgggtcagaatgaccagggcacagatgcaataaaaggctcagctatagtttgccaggcaccagaagacagagatagagaggttgttggtgagaccgatggcaaccaagttgccgcttaaagcacacaggcaggatgtagtgtcatccttcatggccc Alignment from Exonerate_coding2genome ccaatggcctacaattcgagatcattcttgcgttctctctgctgtcacagttgccagaggctttctgtacacttccttcctaaagccatacaatcctcactgcactcattcagatgcctctgtagcctgtcactcgtctatggagtcagagcacgcaggctcttccccaggatgccaacgacagaacagtcaccctggatgtcaccaacaaaacagtgcttccacattcaactcaaacaatatgacagtatctttcacctcaggccttgctcttatgcagcctcaggatacctctccattaaaggactgtgcccatgagacactcactgtgtcctggaacatggggcacccaaagactggtccttccacatgctcctctgatccaggcttttgccaacgcaggctggggaaccctgcagatggtgccagagacatcagccagcctgcctcaactttaaggggctgtcaaggctcacattcagaagtaatcagttactctgtgttgggtcagaatgaccagggcacagatgcaataaaaggctcagctatagtttgccaggcaccagaagacagagatagagaggttgttggtgagaccgatggcaaccaagttgccgcttaaagcacacaggcaggatgtagtgtcatccttcatggccc Alignment from GeneWise GAGTCACCAAAGGCTTTGTCTACAGCTCCTTCCTGAAGCCTTACAATCCTCGCTGCAGCCATTCGGATGCCTCCGTGGCCAGCCACTCCTCCACGGAGTCAGAGCACAGTGGCTCCTCCCCCGGGTGCCATCGACAGAACAGCCAC---------------------AGTGCCTTGACCTTCAACTCCAACAACATGACTGTGTCCTTCACCTCAGGACTTGCCCTAACGCAGCCTCAGGATGCATCTCCACTGAAGGACTGTGCCCACGAAACTCTCGCTGTGTCCTGGAACACAGGGCATCCAGAGACTGGACCTTCCACGTGCTCTTCCGACCCAGGCTTTTCCTGCCAGCGCAGGCTGGGGAACCCTGCAGATGGTGCCAGAGACATCAGCCAACCTGCTTCAACCTTGAGGGGCTGCCAGCGAGGCTCCCCGCATTCAGAAGTGGTCGGTTACTCTGTGCCAGGGCAAAATGACCAAGGCAGTGACTCTATAAAAGGCTCTGCAAGAGTCTGTCAGGCTCCAGAAGACAGAGACAGAGGGGTCGGGAGCAGCGAGACAGAGGGCAACCAG ccaatggcctacaattcgagatcattcttgcgttctctctgctgtcacagTTGCC---AGAGGCTTTCTGTACACTTCCTTCCTAAAGCCATACAATCCTCACTGCACTCATTCAGATGCCTCTGTAGCCTGTCACTCGTCTATGGAGTCAGAGCACGCAGGCTCTTCCCCAGGATGCCAACGACAGAACAGTCACCCTGGATGTCACCAACAAAACAGTGCTTCCACATTCAACTCAAACAATATGACAGTATCTTTCACCTCAGGCCTTGCTCTTATGCAGCCTCAGGATACCTCTCCATTAAAGGACTGTGCCCATGAGACACTCACTGTGTCCTGGAACATGGGGCACCCAAAGACTGGTCCTTCCACATGCTCCTCTGATCCAGGCTTT---TGCCAACGCAGGCTGGGGAACCCTGCAGATGGTGCCAGAGACATCAGCCAGCCTGCCTCAACTTTAAGGGGCTGTCAA---GGCTCA---CATTCAGAAGTAATCAGTTACTCTGTGTTGGGTCAGAATGACCAGGGCACAGATGCAATAAAAGGCTCAGCTATAGTTTGCCAGGCACCAGAAGACAGAGATAGAGAGGTT---GTTGGTGAGACCGATGGCAACCAAgttgccgcttaaagcacacaggcaggatgtagtgtcatccttcatggccc #### Dnmbp_ID8856_10 --> 0 - 0 Original Alignment GAATCTGCATGTGTGAAGGTGGTGGCAGCCATGAGCATATGGGATCTGTGCATGGAGAGGGGACATCATGACCTGGAGCAGTTCGAGAAGGTGCATCGCTACATCAGTGACCAGCTCTTCACACGGTTT agaaacttggtcccccacatttctcactcgctcttcctctcctgcttcagGAGTCTGCATGTGTAAGAGTGGTAGCAGCGATGAGCATATGGGATCTCTGTATGGAGAGGGGACACCATGACTTGGAGCAGTTTAAAAAAGTGCATCAATACATAAGCGACCAGCTGTTTACACGATTTgtaagtagtattattctcctactcccatgacactccagtcgtacccttaa Alignment from CESAR GAATCTGCATGTGTGAAGGTGGTGGCAGCCATGAGCATATGGGATCTGTGCATGGAGAGGGGACATCATGACCTGGAGCAGTTCGAGAAGGTGCATCGCTACATCAGTGACCAGCTCTTCACACGGTTT agaaacttggtcccccacatttctcactcgctcttcctctcctgcttcagGAGTCTGCATGTGTAAGAGTGGTAGCAGCGATGAGCATATGGGATCTCTGTATGGAGAGGGGACACCATGACTTGGAGCAGTTTAAAAAAGTGCATCAATACATAAGCGACCAGCTGTTTACACGATTTgtaagtagtattattctcctactcccatgacactccagtcgtacccttaa Alignment from Spaln_aa2Genome GAATCTGCATGTGTGAAGGTGGTGGCAGCCATGAGCATATGGGATCTGTGCATGGAGAGGGGACATCATGACCTGGAGCAGTTCGAGAAGGTGCATCGCTACATCAGTGACCAGCTCTTCACACGGTTT agaaacttggtcccccacatttctcactcgctcttcctctcctgcttcagGAGTCTGCATGTGTAAGAGTGGTAGCAGCGATGAGCATATGGGATCTCTGTATGGAGAGGGGACACCATGACTTGGAGCAGTTTAAAAAAGTGCATCAATACATAAGCGACCAGCTGTTTACACGATTTgtaagtagtattattctcctactcccatgacactccagtcgtacccttaa Alignment from Spaln_nt2Genome GAATCTGCATGTGTGAAGGTGGTGGCAGCCATGAGCATATGGGATCTGTGCATGGAGAGGGGACATCATGACCTGGAGCAGTTCGAGAAGGTGCATCGCTACATCAGTGACCAGCTCTTCACACGGTTT agaaacttggtcccccacatttctcactcgctcttcctctcctgcttcagGAGTCTGCATGTGTAAGAGTGGTAGCAGCGATGAGCATATGGGATCTCTGTATGGAGAGGGGACACCATGACTTGGAGCAGTTTAAAAAAGTGCATCAATACATAAGCGACCAGCTGTTTACACGATTTgtaagtagtattattctcctactcccatgacactccagtcgtacccttaa Alignment from Pairagon GAATCTGCATGTGTGAAGGTGGTGGCAGCCATGAGCATATGGGATCTGTGCATGGAGAGGGGACATCATGACCTGGAGCAGTTCGAGAAGGTGCATCGCTACATCAGTGACCAGCTCTTCACACGGTTT agaaacttggtcccccacatttctcactcgctcttcctctcctgcttcagGAGTCTGCATGTGTAAGAGTGGTAGCAGCGATGAGCATATGGGATCTCTGTATGGAGAGGGGACACCATGACTTGGAGCAGTTTAAAAAAGTGCATCAATACATAAGCGACCAGCTGTTTACACGATTTgtaagtagtattattctcctactcccatgacactccagtcgtacccttaa Alignment from Exonerate_protein2genome GAATCTGCATGTGTGAAGGTGGTGGCAGCCATGAGCATATGGGATCTGTGCATGGAGAGGGGACATCATGACCTGGAGCAGTTCGAGAAGGTGCATCGCTACATCAGTGACCAGCTCTTCACACGGTTT agaaacttggtcccccacatttctcactcgctcttcctctcctgcttcagGAGTCTGCATGTGTAAGAGTGGTAGCAGCGATGAGCATATGGGATCTCTGTATGGAGAGGGGACACCATGACTTGGAGCAGTTTAAAAAAGTGCATCAATACATAAGCGACCAGCTGTTTACACGATTTgtaagtagtattattctcctactcccatgacactccagtcgtacccttaa Alignment from Exonerate_coding2genome GAATCTGCATGTGTGAAGGTGGTGGCAGCCATGAGCATATGGGATCTGTGCATGGAGAGGGGACATCATGACCTGGAGCAGTTCGAGAAGGTGCATCGCTACATCAGTGACCAGCTCTTCACACGGTTT agaaacttggtcccccacatttctcactcgctcttcctctcctgcttcagGAGTCTGCATGTGTAAGAGTGGTAGCAGCGATGAGCATATGGGATCTCTGTATGGAGAGGGGACACCATGACTTGGAGCAGTTTAAAAAAGTGCATCAATACATAAGCGACCAGCTGTTTACACGATTTgtaagtagtattattctcctactcccatgacactccagtcgtacccttaa Alignment from GeneWise GAATCTGCATGTGTGAAGGTGGTGGCAGCCATGAGCATATGGGATCTGTGCATGGAGAGGGGACATCATGACCTGGAGCAGTTCGAGAAGGTGCATCGCTACATCAGTGACCAGCTCTTCACACGGTTT agaaacttggtcccccacatttctcactcgctcttcctctcctgcttcagGAGTCTGCATGTGTAAGAGTGGTAGCAGCGATGAGCATATGGGATCTCTGTATGGAGAGGGGACACCATGACTTGGAGCAGTTTAAAAAAGTGCATCAATACATAAGCGACCAGCTGTTTACACGATTTgtaagtagtattattctcctactcccatgacactccagtcgtacccttaa #### Dntt_ID8077_3 --> 0 - 0 Original Alignment GTGAATAGAAACTCCTCCCCGAGTCCTGTCCCAGGCTCCCAGAATGTTCCAGCACCTGCTGTGAAGAAGATCTCCCAATATGCTTGCCAGCGAAGAACCACATTAAACAATTACAACCAACTATTCACG ttacacttgactaacttattgttgttcacatttgcatggtattctcatagGTGAATAGAAATTCCTCACCAAGTCCTGTACCAGGTCCCCAAAATGTTCCAGCACCTGCTGTGAAAAAGATCTCCCAGTATGCTTGTCAGCGAAGGACTGCCTTAAACAACTACAATCAACTATCCACAgtaaagaggcaatctaggggtcaaacaaggcctgaggtttcttaccctca Alignment from CESAR GTGAATAGAAACTCCTCCCCGAGTCCTGTCCCAGGCTCCCAGAATGTTCCAGCACCTGCTGTGAAGAAGATCTCCCAATATGCTTGCCAGCGAAGAACCACATTAAACAATTACAACCAACTATTCACG ttacacttgactaacttattgttgttcacatttgcatggtattctcatagGTGAATAGAAATTCCTCACCAAGTCCTGTACCAGGTCCCCAAAATGTTCCAGCACCTGCTGTGAAAAAGATCTCCCAGTATGCTTGTCAGCGAAGGACTGCCTTAAACAACTACAATCAACTATCCACAgtaaagaggcaatctaggggtcaaacaaggcctgaggtttcttaccctca Alignment from Spaln_aa2Genome GTGAATAGAAACTCCTCCCCGAGTCCTGTCCCAGGCTCCCAGAATGTTCCAGCACCTGCTGTGAAGAAGATCTCCCAATATGCTTGCCAGCGAAGAACCACATTAAACAATTACAACCAACTATTCACG ttacacttgactaacttattgttgttcacatttgcatggtattctcatagGTGAATAGAAATTCCTCACCAAGTCCTGTACCAGGTCCCCAAAATGTTCCAGCACCTGCTGTGAAAAAGATCTCCCAGTATGCTTGTCAGCGAAGGACTGCCTTAAACAACTACAATCAACTATCCACAgtaaagaggcaatctaggggtcaaacaaggcctgaggtttcttaccctca Alignment from Spaln_nt2Genome GTGAATAGAAACTCCTCCCCGAGTCCTGTCCCAGGCTCCCAGAATGTTCCAGCACCTGCTGTGAAGAAGATCTCCCAATATGCTTGCCAGCGAAGAACCACATTAAACAATTACAACCAACTATTCACG ttacacttgactaacttattgttgttcacatttgcatggtattctcatagGTGAATAGAAATTCCTCACCAAGTCCTGTACCAGGTCCCCAAAATGTTCCAGCACCTGCTGTGAAAAAGATCTCCCAGTATGCTTGTCAGCGAAGGACTGCCTTAAACAACTACAATCAACTATCCACAgtaaagaggcaatctaggggtcaaacaaggcctgaggtttcttaccctca Alignment from Pairagon GTGAATAGAAACTCCTCCCCGAGTCCTGTCCCAGGCTCCCAGAATGTTCCAGCACCTGCTGTGAAGAAGATCTCCCAATATGCTTGCCAGCGAAGAACCACATTAAACAATTACAACCAACTATTCACG ttacacttgactaacttattgttgttcacatttgcatggtattctcatagGTGAATAGAAATTCCTCACCAAGTCCTGTACCAGGTCCCCAAAATGTTCCAGCACCTGCTGTGAAAAAGATCTCCCAGTATGCTTGTCAGCGAAGGACTGCCTTAAACAACTACAATCAACTATCCACAgtaaagaggcaatctaggggtcaaacaaggcctgaggtttcttaccctca Alignment from Exonerate_protein2genome GTGAATAGAAACTCCTCCCCGAGTCCTGTCCCAGGCTCCCAGAATGTTCCAGCACCTGCTGTGAAGAAGATCTCCCAATATGCTTGCCAGCGAAGAACCACATTAAACAATTACAACCAACTATTCACG ttacacttgactaacttattgttgttcacatttgcatggtattctcatagGTGAATAGAAATTCCTCACCAAGTCCTGTACCAGGTCCCCAAAATGTTCCAGCACCTGCTGTGAAAAAGATCTCCCAGTATGCTTGTCAGCGAAGGACTGCCTTAAACAACTACAATCAACTATCCACAgtaaagaggcaatctaggggtcaaacaaggcctgaggtttcttaccctca Alignment from Exonerate_coding2genome GTGAATAGAAACTCCTCCCCGAGTCCTGT-CCCAGGCTCCCAGAATGTTCCAGCACCTGCTGTGAAGAAGATCTCCCAATATGCTTGCCAGCGAAGAACCACATTAAACAATTACAACCAACTATTCACG ttacacttgactaacttattgttgttcacatttgcatggtattctcatagGTGAATAGAAATTCCTCACCAAGTCCTGTACCA-GGTCCCCAAAATGTTCCAGCACCTGCTGTGAAAAAGATCTCCCAGTATGCTTGTCAGCGAAGGACTGCCTTAAACAACTACAATCAACTATCCACAgtaaagaggcaatctaggggtcaaacaaggcctgaggtttcttaccctca Alignment from GeneWise ---AATAGAAACTCCTCCCCGAGTCCTGTCCCAGGCTCCCAGAATGTTCCAGCACCTGCTGTGAAGAAGATCTCCCAATATGCTTGCCAGCGAAGAACCACATTAAACAATTACAACCAACTATTCACG ttacacttgactaacttattgttgttcacatttgcatggtattctcatagGTGAATAGAAATTCCTCACCAAGTCCTGTACCAGGTCCCCAAAATGTTCCAGCACCTGCTGTGAAAAAGATCTCCCAGTATGCTTGTCAGCGAAGGACTGCCTTAAACAACTACAATCAACTATCCACAgtaaagaggcaatctaggggtcaaacaaggcctgaggtttcttaccctca #### Dntt_ID8084_10 --> 0 - 0 Original Alignment CAGTTTGAGAGAGACTTGCGGCGCTATGCCACACACGAGAGGAAGATGATGCTGGACAACCACGCCCTGTATGACAGGACTAAG tacaaaactagccccatcctgttacagaataataaaattctttctttcagCAATTTGAGAGAGACTTACGGCACTATGCCACACATGAAAGAAAGATGATGTTGGACAATCAGGCTCTATATGATCGCACTAAGgtatgtcccttctggaataactggattggcctgtcagctctcttttcaaa Alignment from CESAR CAGTTTGAGAGAGACTTGCGGCGCTATGCCACACACGAGAGGAAGATGATGCTGGACAACCACGCCCTGTATGACAGGACTAAG tacaaaactagccccatcctgttacagaataataaaattctttctttcagCAATTTGAGAGAGACTTACGGCACTATGCCACACATGAAAGAAAGATGATGTTGGACAATCAGGCTCTATATGATCGCACTAAGgtatgtcccttctggaataactggattggcctgtcagctctcttttcaaa Alignment from Spaln_aa2Genome CAGTTTGAGAGAGACTTGCGGCGCTATGCCACACACGAGAGGAAGATGATGCTGGACAACCACGCCCTGTATGACAGGACTAAG tacaaaactagccccatcctgttacagaataataaaattctttctttcagCAATTTGAGAGAGACTTACGGCACTATGCCACACATGAAAGAAAGATGATGTTGGACAATCAGGCTCTATATGATCGCACTAAGgtatgtcccttctggaataactggattggcctgtcagctctcttttcaaa Alignment from Spaln_nt2Genome CAGTTTGAGAGAGACTTGCGGCGCTATGCCACACACGAGAGGAAGATGATGCTGGACAACCACGCCCTGTATGACAGGACTAAG tacaaaactagccccatcctgttacagaataataaaattctttctttcagCAATTTGAGAGAGACTTACGGCACTATGCCACACATGAAAGAAAGATGATGTTGGACAATCAGGCTCTATATGATCGCACTAAGgtatgtcccttctggaataactggattggcctgtcagctctcttttcaaa Alignment from Pairagon CAGTTTGAGAGAGACTTGCGGCGCTATGCCACACACGAGAGGAAGATGATGCTGGACAACCACGCCCTGTATGACAGGACTAAG tacaaaactagccccatcctgttacagaataataaaattctttctttcagCAATTTGAGAGAGACTTACGGCACTATGCCACACATGAAAGAAAGATGATGTTGGACAATCAGGCTCTATATGATCGCACTAAGgtatgtcccttctggaataactggattggcctgtcagctctcttttcaaa Alignment from Exonerate_protein2genome CAGTTTGAGAGAGACTTGCGGCGCTATGCCACACACGAGAGGAAGATGATGCTGGACAACCACGCCCTGTATGACAGGACTAAG tacaaaactagccccatcctgttacagaataataaaattctttctttcagCAATTTGAGAGAGACTTACGGCACTATGCCACACATGAAAGAAAGATGATGTTGGACAATCAGGCTCTATATGATCGCACTAAGgtatgtcccttctggaataactggattggcctgtcagctctcttttcaaa Alignment from Exonerate_coding2genome CAGTTTGAGAGAGACTTGCGGCGCTATGCCACACACGAGAGGAAGATGATGCTGGACAACCACGCCCTGTATGACAGGACTAAG tacaaaactagccccatcctgttacagaataataaaattctttctttcagCAATTTGAGAGAGACTTACGGCACTATGCCACACATGAAAGAAAGATGATGTTGGACAATCAGGCTCTATATGATCGCACTAAGgtatgtcccttctggaataactggattggcctgtcagctctcttttcaaa Alignment from GeneWise CAGTTTGAGAGAGACTTGCGGCGCTATGCCACACACGAGAGGAAGATGATGCTGGACAACCACGCCCTGTATGACAGGACTAAG tacaaaactagccccatcctgttacagaataataaaattctttctttcagCAATTTGAGAGAGACTTACGGCACTATGCCACACATGAAAGAAAGATGATGTTGGACAATCAGGCTCTATATGATCGCACTAAGgtatgtcccttctggaataactggattggcctgtcagctctcttttcaaa #### Dock8_ID5378_3 --> 0 - 2 Original Alignment CCTCAGCTTTATGAGCCTGTCGAGCCAGTGGACTTTGAAGGACTCGTGATGACACACTTAAACAGCTTGGATGCAGAGCTGGCCCAGGAGCTGGGGGACCTCACCGATGACGACCTGCATGTGGCCTTCACACCCAAAGAATGTAGGACTTTGCAGCACTCTCTGCCAGAGGAAgg ggtcatcccatcaaattgtggtgtatcataactaaggcctacctacacagCCCCAGCTATATGAGCCTGATGAGCCAGTGGACCTTGAAGGCCTTGTAATGACACACTTAAACAGTTTAGACGCAGAGCTTGCTCAGGAACTTGGGGACCTAACCGATGACGAATTGCATGTGGCATTCACATCCAAAGAATCTAGGACTTTGCAACATTCTTTGTCAGAGGAGgggtaagtaaaattgtttgcaccacacaacctgttagtgtctccttgggtca Alignment from CESAR CCTCAGCTTTATGAGCCTGTCGAGCCAGTGGACTTTGAAGGACTCGTGATGACACACTTAAACAGCTTGGATGCAGAGCTGGCCCAGGAGCTGGGGGACCTCACCGATGACGACCTGCATGTGGCCTTCACACCCAAAGAATGTAGGACTTTGCAGCACTCTCTGCCAGAGGAAgg ggtcatcccatcaaattgtggtgtatcataactaaggcctacctacacagCCCCAGCTATATGAGCCTGATGAGCCAGTGGACCTTGAAGGCCTTGTAATGACACACTTAAACAGTTTAGACGCAGAGCTTGCTCAGGAACTTGGGGACCTAACCGATGACGAATTGCATGTGGCATTCACATCCAAAGAATCTAGGACTTTGCAACATTCTTTGTCAGAGGAGgggtaagtaaaattgtttgcaccacacaacctgttagtgtctccttgggtca Alignment from Spaln_aa2Genome CCTCAGCTTTATGAGCCTGTCGAGCCAGTGGACTTTGAAGGACTCGTGATGACACACTTAAACAGCTTGGATGCAGAGCTGGCCCAGGAGCTGGGGGACCTCACCGATGACGACCTGCATGTGGCCTTCACACCCAAAGAATGTAGGACTTTGCAGCACTCTCTGCCAGAGGAAGG ggtcatcccatcaaattgtggtgtatcataactaaggcctacctacacagCCCCAGCTATATGAGCCTGATGAGCCAGTGGACCTTGAAGGCCTTGTAATGACACACTTAAACAGTTTAGACGCAGAGCTTGCTCAGGAACTTGGGGACCTAACCGATGACGAATTGCATGTGGCATTCACATCCAAAGAATCTAGGACTTTGCAACATTCTTTGTCAGAGGAGGGgtaagtaaaattgtttgcaccacacaacctgttagtgtctccttgggtca Alignment from Spaln_nt2Genome CCTCAGCTTTATGAGCCTGTCGAGCCAGTGGACTTTGAAGGACTCGTGATGACACACTTAAACAGCTTGGATGCAGAGCTGGCCCAGGAGCTGGGGGACCTCACCGATGACGACCTGCATGTGGCCTTCACACCCAAAGAATGTAGGACTTTGCAGCACTCTCTGCCAGAGGAAGG ggtcatcccatcaaattgtggtgtatcataactaaggcctacctacacagCCCCAGCTATATGAGCCTGATGAGCCAGTGGACCTTGAAGGCCTTGTAATGACACACTTAAACAGTTTAGACGCAGAGCTTGCTCAGGAACTTGGGGACCTAACCGATGACGAATTGCATGTGGCATTCACATCCAAAGAATCTAGGACTTTGCAACATTCTTTGTCAGAGGAGGGgtaagtaaaattgtttgcaccacacaacctgttagtgtctccttgggtca Alignment from Pairagon CCTCAGCTTTATGAGCCTGTCGAGCCAGTGGACTTTGAAGGACTCGTGATGACACACTTAAACAGCTTGGATGCAGAGCTGGCCCAGGAGCTGGGGGACCTCACCGATGACGACCTGCATGTGGCCTTCACACCCAAAGAATGTAGGACTTTGCAGCACTCTCTGCCAGAGGAAGG ggtcatcccatcaaattgtggtgtatcataactaaggcctacctacacagCCCCAGCTATATGAGCCTGATGAGCCAGTGGACCTTGAAGGCCTTGTAATGACACACTTAAACAGTTTAGACGCAGAGCTTGCTCAGGAACTTGGGGACCTAACCGATGACGAATTGCATGTGGCATTCACATCCAAAGAATCTAGGACTTTGCAACATTCTTTGTCAGAGGAGGGgtaagtaaaattgtttgcaccacacaacctgttagtgtctccttgggtca Alignment from Exonerate_protein2genome CCTCAGCTTTATGAGCCTGTCGAGCCAGTGGACTTTGAAGGACTCGTGATGACACACTTAAACAGCTTGGATGCAGAGCTGGCCCAGGAGCTGGGGGACCTCACCGATGACGACCTGCATGTGGCCTTCACACCCAAAGAATGTAGGACTTTGCAGCACTCTCTGCCAGAGGAAGG ggtcatcccatcaaattgtggtgtatcataactaaggcctacctacacagCCCCAGCTATATGAGCCTGATGAGCCAGTGGACCTTGAAGGCCTTGTAATGACACACTTAAACAGTTTAGACGCAGAGCTTGCTCAGGAACTTGGGGACCTAACCGATGACGAATTGCATGTGGCATTCACATCCAAAGAATCTAGGACTTTGCAACATTCTTTGTCAGAGGAGGGgtaagtaaaattgtttgcaccacacaacctgttagtgtctccttgggtca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCTCAGCTTTATGAGCCTGTCGAGCCAGTGGACTTTGAAGGACTCGTGATGACACACTTAAACAGCTTGGATGCAGAGCTGGCCCAGGAGCTGGGGGACCTCACCGATGACGACCTGCATGTGGCCTTCACACCCAAAGAATGTAGGACTTTGCAGCACTCTCTGCCAGAGGAAGG ggtcatcccatcaaattgtggtgtatcataactaaggcctacctacacagCCCCAGCTATATGAGCCTGATGAGCCAGTGGACCTTGAAGGCCTTGTAATGACACACTTAAACAGTTTAGACGCAGAGCTTGCTCAGGAACTTGGGGACCTAACCGATGACGAATTGCATGTGGCATTCACATCCAAAGAATCTAGGACTTTGCAACATTCTTTGTCAGAGGAGGGgtaagtaaaattgtttgcaccacacaacctgttagtgtctccttgggtca #### Dock8_ID5379_4 --> 1 - 2 Original Alignment aGTTGAACTGGATCCTCACGTCAGAGACTGTGTTCAGACCTATATTCGAGAGTGGCTGATTGTAAACCGGaa aaatgcataaagtaccagtgctcagaggactcaacaatgttcttttgcagaGTTGAACTAGACCCTCATGTCAAAGACTGCGTGCAGATGTACATACGAGAGTGGCTGATTGTAAACCGGaagtaagtttattccctttttgcatgtctaagttctctagaacatacataaa Alignment from CESAR aGTTGAACTGGATCCTCACGTCAGAGACTGTGTTCAGACCTATATTCGAGAGTGGCTGATTGTAAACCGGaa aaatgcataaagtaccagtgctcagaggactcaacaatgttcttttgcagaGTTGAACTAGACCCTCATGTCAAAGACTGCGTGCAGATGTACATACGAGAGTGGCTGATTGTAAACCGGaagtaagtttattccctttttgcatgtctaagttctctagaacatacataaa Alignment from Spaln_aa2Genome AGTTGAACTGGATCCTCACGTCAGAGACTGTGTTCAGACCTATATTCGAGAGTGGCTGATTGTAAACCGGAA aaatgcataaagtaccagtgctcagaggactcaacaatgttcttttgcagAGTTGAACTAGACCCTCATGTCAAAGACTGCGTGCAGATGTACATACGAGAGTGGCTGATTGTAAACCGGAAgtaagtttattccctttttgcatgtctaagttctctagaacatacataaa Alignment from Spaln_nt2Genome AGTTGAACTGGATCCTCACGTCAGAGACTGTGTTCAGACCTATATTCGAGAGTGGCTGATTGTAAACCGGAA aaatgcataaagtaccagtgctcagaggactcaacaatgttcttttgcagAGTTGAACTAGACCCTCATGTCAAAGACTGCGTGCAGATGTACATACGAGAGTGGCTGATTGTAAACCGGAAgtaagtttattccctttttgcatgtctaagttctctagaacatacataaa Alignment from Pairagon AGTTGAACTGGATCCTCACGTCAGAGACTGTGTTCAGACCTATATTCGAGAGTGGCTGATTGTAAACCGGAA aaatgcataaagtaccagtgctcagaggactcaacaatgttcttttgcagAGTTGAACTAGACCCTCATGTCAAAGACTGCGTGCAGATGTACATACGAGAGTGGCTGATTGTAAACCGGAAgtaagtttattccctttttgcatgtctaagttctctagaacatacataaa Alignment from Exonerate_protein2genome AGTTGAACTGGATCCTCACGTCAGAGACTGTGTTCAGACCTATATTCGAGAGTGGCTGATTGTAAACCGGAA aaatgcataaagtaccagtgctcagaggactcaacaatgttcttttgcagAGTTGAACTAGACCCTCATGTCAAAGACTGCGTGCAGATGTACATACGAGAGTGGCTGATTGTAAACCGGAAgtaagtttattccctttttgcatgtctaagttctctagaacatacataaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AGTTGAACTGGATCCTCACGTCAGAGACTGTGTTCAGACCTATATTCGAGAGTGGCTGATTGTAAACCGGAA aaatgcataaagtaccagtgctcagaggactcaacaatgttcttttgcagAGTTGAACTAGACCCTCATGTCAAAGACTGCGTGCAGATGTACATACGAGAGTGGCTGATTGTAAACCGGAAgtaagtttattccctttttgcatgtctaagttctctagaacatacataaa #### Dock8_ID5384_7 --> 0 - 2 Original Alignment GAGGATGCTGTGGAAATACGTCCAGTACCTGAATGTCCTAAGGAACATCTGGGCAACAGAATATTGGTCAAGGTGCTGACTCTGaa ctcacctctagggaaactgccttttctacctgaccctctactgccctcagGAGGATGCTGTGGAAATACGTCCAGTACCTGAATGTCCCAAGGAACATCTCGGCAATAGAATATTGCTCAAGGTGCTGACACTGaagtacacaacagggtcatgacttgaaagtcattataaggccccctgctgct Alignment from CESAR GAGGATGCTGTGGAAATACGTCCAGTACCTGAATGTCCTAAGGAACATCTGGGCAACAGAATATTGGTCAAGGTGCTGACTCTGaa ctcacctctagggaaactgccttttctacctgaccctctactgccctcagGAGGATGCTGTGGAAATACGTCCAGTACCTGAATGTCCCAAGGAACATCTCGGCAATAGAATATTGCTCAAGGTGCTGACACTGaagtacacaacagggtcatgacttgaaagtcattataaggccccctgctgct Alignment from Spaln_aa2Genome GAGGATGCTGTGGAAATACGTCCAGTACCTGAATGTCCTAAGGAACATCTGGGCAACAGAATATTGGTCAAGGTGCTGACTCTGAA ctcacctctagggaaactgccttttctacctgaccctctactgccctcagGAGGATGCTGTGGAAATACGTCCAGTACCTGAATGTCCCAAGGAACATCTCGGCAATAGAATATTGCTCAAGGTGCTGACACTGAAgtacacaacagggtcatgacttgaaagtcattataaggccccctgctgct Alignment from Spaln_nt2Genome GAGGATGCTGTGGAAATACGTCCAGTACCTGAATGTCCTAAGGAACATCTGGGCAACAGAATATTGGTCAAGGTGCTGACTCTGAA ctcacctctagggaaactgccttttctacctgaccctctactgccctcagGAGGATGCTGTGGAAATACGTCCAGTACCTGAATGTCCCAAGGAACATCTCGGCAATAGAATATTGCTCAAGGTGCTGACACTGAAgtacacaacagggtcatgacttgaaagtcattataaggccccctgctgct Alignment from Pairagon GAGGATGCTGTGGAAATACGTCCAGTACCTGAATGTCCTAAGGAACATCTGGGCAACAGAATATTGGTCAAGGTGCTGACTCTGAA ctcacctctagggaaactgccttttctacctgaccctctactgccctcagGAGGATGCTGTGGAAATACGTCCAGTACCTGAATGTCCCAAGGAACATCTCGGCAATAGAATATTGCTCAAGGTGCTGACACTGAAgtacacaacagggtcatgacttgaaagtcattataaggccccctgctgct Alignment from Exonerate_protein2genome GAGGATGCTGTGGAAATACGTCCAGTACCTGAATGTCCTAAGGAACATCTGGGCAACAGAATATTGGTCAAGGTGCTGACTCTGAA ctcacctctagggaaactgccttttctacctgaccctctactgccctcagGAGGATGCTGTGGAAATACGTCCAGTACCTGAATGTCCCAAGGAACATCTCGGCAATAGAATATTGCTCAAGGTGCTGACACTGAAgtacacaacagggtcatgacttgaaagtcattataaggccccctgctgct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAGGATGCTGTGGAAATACGTCCAGTACCTGAATGTCCTAAGGAACATCTGGGCAACAGAATATTGGTCAAGGTGCTGACTCTGAA ctcacctctagggaaactgccttttctacctgaccctctactgccctcagGAGGATGCTGTGGAAATACGTCCAGTACCTGAATGTCCCAAGGAACATCTCGGCAATAGAATATTGCTCAAGGTGCTGACACTGAAgtacacaacagggtcatgacttgaaagtcattataaggccccctgctgct #### Dock8_ID5390_13 --> 0 - 1 Original Alignment GAGGGAGATCGCCTTAGTGATGAAGACTTGTTCAAGTTTTTAGCTGACTACAAGAGATCTTCATCCCTACAGCGAAGAGTCAAATCCATCCCAg aaagacataaccactcacacatcccactatgcgtggccttttgctctcagGAGGGGGATCGACTTAGTGATGAAGACTTATTCAAGTTTTTAGCTGACTACAAGAAATCATCACCCCTACAGCGAAGAGTCAAATCTATCCCAggtagggtgggaacttcttctcatttcaagtacggaccccatctgtatttg Alignment from CESAR GAGGGAGATCGCCTTAGTGATGAAGACTTGTTCAAGTTTTTAGCTGACTACAAGAGATCTTCATCCCTACAGCGAAGAGTCAAATCCATCCCAg aaagacataaccactcacacatcccactatgcgtggccttttgctctcagGAGGGGGATCGACTTAGTGATGAAGACTTATTCAAGTTTTTAGCTGACTACAAGAAATCATCACCCCTACAGCGAAGAGTCAAATCTATCCCAggtagggtgggaacttcttctcatttcaagtacggaccccatctgtatttg Alignment from Spaln_aa2Genome GAGGGAGATCGCCTTAGTGATGAAGACTTGTTCAAGTTTTTAGCTGACTACAAGAGATCTTCATCCCTACAGCGAAGAGTCAAATCCATCCCAG aaagacataaccactcacacatcccactatgcgtggccttttgctctcagGAGGGGGATCGACTTAGTGATGAAGACTTATTCAAGTTTTTAGCTGACTACAAGAAATCATCACCCCTACAGCGAAGAGTCAAATCTATCCCAGgtagggtgggaacttcttctcatttcaagtacggaccccatctgtatttg Alignment from Spaln_nt2Genome GAGGGAGATCGCCTTAGTGATGAAGACTTGTTCAAGTTTTTAGCTGACTACAAGAGATCTTCATCCCTACAGCGAAGAGTCAAATCCATCCCAG aaagacataaccactcacacatcccactatgcgtggccttttgctctcagGAGGGGGATCGACTTAGTGATGAAGACTTATTCAAGTTTTTAGCTGACTACAAGAAATCATCACCCCTACAGCGAAGAGTCAAATCTATCCCAGgtagggtgggaacttcttctcatttcaagtacggaccccatctgtatttg Alignment from Pairagon GAGGGAGATCGCCTTAGTGATGAAGACTTGTTCAAGTTTTTAGCTGACTACAAGAGATCTTCATCCCTACAGCGAAGAGTCAAATCCATCCCAG aaagacataaccactcacacatcccactatgcgtggccttttgctctcagGAGGGGGATCGACTTAGTGATGAAGACTTATTCAAGTTTTTAGCTGACTACAAGAAATCATCACCCCTACAGCGAAGAGTCAAATCTATCCCAGgtagggtgggaacttcttctcatttcaagtacggaccccatctgtatttg Alignment from Exonerate_protein2genome GAGGGAGATCGCCTTAGTGATGAAGACTTGTTCAAGTTTTTAGCTGACTACAAGAGATCTTCATCCCTACAGCGAAGAGTCAAATCCATCCCAG aaagacataaccactcacacatcccactatgcgtggccttttgctctcagGAGGGGGATCGACTTAGTGATGAAGACTTATTCAAGTTTTTAGCTGACTACAAGAAATCATCACCCCTACAGCGAAGAGTCAAATCTATCCCAGgtagggtgggaacttcttctcatttcaagtacggaccccatctgtatttg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAGGGAGATCGCCTTAGTGATGAAGACTTGTTCAAGTTTTTAGCTGACTACAAGAGATCTTCATCCCTACAGCGAAGAGTCAAATCCATCCCAG aaagacataaccactcacacatcccactatgcgtggccttttgctctcagGAGGGGGATCGACTTAGTGATGAAGACTTATTCAAGTTTTTAGCTGACTACAAGAAATCATCACCCCTACAGCGAAGAGTCAAATCTATCCCAGgtagggtgggaacttcttctcatttcaagtacggaccccatctgtatttg #### Dock8_ID5397_18 --> 0 - 0 Original Alignment TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG aatgtctgtgccaactacttgtattcatcagacattttctattcacaaagTGGTTACCAATTCTGTTAAAAGAACGCCTCCAAACCGGATCTTACTGTCTGCCTGTTACCCTGGAAAAGCTCCCGCCTAACTACTCTATTCATTCAGCTGAGgtactgagcagtgatgctgtggtcaagtatccagccctgtcatcccactg Alignment from CESAR TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG aatgtctgtgccaactacttgtattcatcagacattttctattcacaaagTGGTTACCAATTCTGTTAAAAGAACGCCTCCAAACCGGATCTTACTGTCTGCCTGTTACCCTGGAAAAGCTCCCGCCTAACTACTCTATTCATTCAGCTGAGgtactgagcagtgatgctgtggtcaagtatccagccctgtcatcccactg Alignment from Spaln_aa2Genome TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG aatgtctgtgccaactacttgtattcatcagacattttctattcacaaagTGGTTACCAATTCTGTTAAAAGAACGCCTCCAAACCGGATCTTACTGTCTGCCTGTTACCCTGGAAAAGCTCCCGCCTAACTACTCTATTCATTCAGCTGAGgtactgagcagtgatgctgtggtcaagtatccagccctgtcatcccactg Alignment from Spaln_nt2Genome TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG aatgtctgtgccaactacttgtattcatcagacattttctattcacaaagTGGTTACCAATTCTGTTAAAAGAACGCCTCCAAACCGGATCTTACTGTCTGCCTGTTACCCTGGAAAAGCTCCCGCCTAACTACTCTATTCATTCAGCTGAGgtactgagcagtgatgctgtggtcaagtatccagccctgtcatcccactg Alignment from Pairagon TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG aatgtctgtgccaactacttgtattcatcagacattttctattcacaaagTGGTTACCAATTCTGTTAAAAGAACGCCTCCAAACCGGATCTTACTGTCTGCCTGTTACCCTGGAAAAGCTCCCGCCTAACTACTCTATTCATTCAGCTGAGgtactgagcagtgatgctgtggtcaagtatccagccctgtcatcccactg Alignment from Exonerate_protein2genome TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG aatgtctgtgccaactacttgtattcatcagacattttctattcacaaagTGGTTACCAATTCTGTTAAAAGAACGCCTCCAAACCGGATCTTACTGTCTGCCTGTTACCCTGGAAAAGCTCCCGCCTAACTACTCTATTCATTCAGCTGAGgtactgagcagtgatgctgtggtcaagtatccagccctgtcatcccactg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG aatgtctgtgccaactacttgtattcatcagacattttctattcacaaagTGGTTACCAATTCTGTTAAAAGAACGCCTCCAAACCGGATCTTACTGTCTGCCTGTTACCCTGGAAAAGCTCCCGCCTAACTACTCTATTCATTCAGCTGAGgtactgagcagtgatgctgtggtcaagtatccagccctgtcatcccactg #### Dock8_ID5401_22 --> 2 - 0 Original Alignment gtGGCCCCACCACCGTAGTCCCCGACCCCCGATACCACACATATGGACGCACATCTGCCGCTGCAGTGAGTTCAAAGCTGATGCAGGCCCGTGTGATGAGCAGCAGCAACCCAGACCTGACTGGGTCACACTGTGCAGCCGATGAGGAAGTTAAGAACATCATGTCTTCAAAG acccaatccatctcaagctctgcttctggtaaatataattctttttaaaggtGGTCCTACCACAGTAGTGCCTGATCCCAGACACCGCACATATGGACACACATCTGCTGCAGCAGTAAGGTCAAAATTGATGCAGGCCCATGTGACGAGCAGTAGGAATCCAGACCTTACAGGGTTACACTGTGCAACTGATGAGAAAGTCAAAAATATCATCTCTTCGAAAgtaattctagggggaaggggtatatgtggttttgttatgctaccagatca Alignment from CESAR gtGGCCCCACCACCGTAGTCCCCGACCCCCGATACCACACATATGGACGCACATCTGCCGCTGCAGTGAGTTCAAAGCTGATGCAGGCCCGTGTGATGAGCAGCAGCAACCCAGACCTGACTGGGTCACACTGTGCAGCCGATGAGGAAGTTAAGAACATCATGTCTTCAAAG acccaatccatctcaagctctgcttctggtaaatataattctttttaaaggtGGTCCTACCACAGTAGTGCCTGATCCCAGACACCGCACATATGGACACACATCTGCTGCAGCAGTAAGGTCAAAATTGATGCAGGCCCATGTGACGAGCAGTAGGAATCCAGACCTTACAGGGTTACACTGTGCAACTGATGAGAAAGTCAAAAATATCATCTCTTCGAAAgtaattctagggggaaggggtatatgtggttttgttatgctaccagatca Alignment from Spaln_aa2Genome GTGGCCCCACCACCGTAGTCCCCGACCCCCGATACCACACATATGGACGCACATCTGCCGCTGCAGTGAGTTCAAAGCTGATGCAGGCCCGTGTGATGAGCAGCAGCAACCCAGACCTGACTGGGTCACACTGTGCAGCCGATGAGGAAGTTAAGAACATCATGTCTTCAAAG acccaatccatctcaagctctgcttctggtaaatataattctttttaaagGTGGTCCTACCACAGTAGTGCCTGATCCCAGACACCGCACATATGGACACACATCTGCTGCAGCAGTAAGGTCAAAATTGATGCAGGCCCATGTGACGAGCAGTAGGAATCCAGACCTTACAGGGTTACACTGTGCAACTGATGAGAAAGTCAAAAATATCATCTCTTCGAAAgtaattctagggggaaggggtatatgtggttttgttatgctaccagatca Alignment from Spaln_nt2Genome GTGGCCCCACCACCGTAGTCCCCGACCCCCGATACCACACATATGGACGCACATCTGCCGCTGCAGTGAGTTCAAAGCTGATGCAGGCCCGTGTGATGAGCAGCAGCAACCCAGACCTGACTGGGTCACACTGTGCAGCCGATGAGGAAGTTAAGAACATCATGTCTTCAAAG acccaatccatctcaagctctgcttctggtaaatataattctttttaaagGTGGTCCTACCACAGTAGTGCCTGATCCCAGACACCGCACATATGGACACACATCTGCTGCAGCAGTAAGGTCAAAATTGATGCAGGCCCATGTGACGAGCAGTAGGAATCCAGACCTTACAGGGTTACACTGTGCAACTGATGAGAAAGTCAAAAATATCATCTCTTCGAAAgtaattctagggggaaggggtatatgtggttttgttatgctaccagatca Alignment from Pairagon GTGGCCCCACCACCGTAGTCCCCGACCCCCGATACCACACATATGGACGCACATCTGCCGCTGCAGTGAGTTCAAAGCTGATGCAGGCCCGTGTGATGAGCAGCAGCAACCCAGACCTGACTGGGTCACACTGTGCAGCCGATGAGGAAGTTAAGAACATCATGTCTTCAAAG acccaatccatctcaagctctgcttctggtaaatataattctttttaaagGTGGTCCTACCACAGTAGTGCCTGATCCCAGACACCGCACATATGGACACACATCTGCTGCAGCAGTAAGGTCAAAATTGATGCAGGCCCATGTGACGAGCAGTAGGAATCCAGACCTTACAGGGTTACACTGTGCAACTGATGAGAAAGTCAAAAATATCATCTCTTCGAAAgtaattctagggggaaggggtatatgtggttttgttatgctaccagatca Alignment from Exonerate_protein2genome GTGGCCCCACCACCGTAGTCCCCGACCCCCGATACCACACATATGGACGCACATCTGCCGCTGCAGTGAGTTCAAAGCTGATGCAGGCCCGTGTGATGAGCAGCAGCAACCCAGACCTGACTGGGTCACACTGTGCAGCCGATGAGGAAGTTAAGAACATCATGTCTTCAAAG acccaatccatctcaagctctgcttctggtaaatataattctttttaaagGTGGTCCTACCACAGTAGTGCCTGATCCCAGACACCGCACATATGGACACACATCTGCTGCAGCAGTAAGGTCAAAATTGATGCAGGCCCATGTGACGAGCAGTAGGAATCCAGACCTTACAGGGTTACACTGTGCAACTGATGAGAAAGTCAAAAATATCATCTCTTCGAAAgtaattctagggggaaggggtatatgtggttttgttatgctaccagatca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGGCCCCACCACCGTAGTCCCCGACCCCCGATACCACACATATGGACGCACATCTGCCGCTGCAGTGAGTTCAAAGCTGATGCAGGCCCGTGTGATGAGCAGCAGCAACCCAGACCTGACTGGGTCACACTGTGCAGCCGATGAGGAAGTTAAGAACATCATGTCTTCAAAG acccaatccatctcaagctctgcttctggtaaatataattctttttaaagGTGGTCCTACCACAGTAGTGCCTGATCCCAGACACCGCACATATGGACACACATCTGCTGCAGCAGTAAGGTCAAAATTGATGCAGGCCCATGTGACGAGCAGTAGGAATCCAGACCTTACAGGGTTACACTGTGCAACTGATGAGAAAGTCAAAAATATCATCTCTTCGAAAgtaattctagggggaaggggtatatgtggttttgttatgctaccagatca #### Dock8_ID5411_30 --> 2 - 0 Original Alignment atGCTCGCAGTGGAAGGAGTCGTGCCAGTGGCTCGTATGAAGAACAAGATGTGGCCAACGGAATCAACCAGAATGTGGCCCTGGCCATAGCGGGGAATCACTTTAATTTGAAGACCAGTGGAGCAATGCTGTCT---------------TCCTTG actagaccacccacataataattacagactctcttttgtctgccctgcagatGCTCATAGTTGGAGAAGTTGTGCCAGTGGCTCATATGATGAGCAGGATGTGGCCAATGGAATTAACCAAAATGCTGCCCTGACAATAGCAGGAAACCACTTTAATCTAAAGACGAGTGGTGCAATGCTATCTTGCGCAATGCTATCTTCCTTGgtgcgtgtgcctctacaactcctgcctagtaagagtgcctgtacatcttt Alignment from CESAR atGCTCGCAGTGGAAGGAGTCGTGCCAGTGGCTCGTATGAAGAACAAGATGTGGCCAACGGAATCAACCAGAATGTGGCCCTGGCCATAGCGGGGAATCACTTTAATTTGAAGACCAGTGGAGCAATG---------------CTGTCTTCCTTG actagaccacccacataataattacagactctcttttgtctgccctgcagatGCTCATAGTTGGAGAAGTTGTGCCAGTGGCTCATATGATGAGCAGGATGTGGCCAATGGAATTAACCAAAATGCTGCCCTGACAATAGCAGGAAACCACTTTAATCTAAAGACGAGTGGTGCAATGCTATCTTGCGCAATGCTATCTTCCTTGgtgcgtgtgcctctacaactcctgcctagtaagagtgcctgtacatcttt Alignment from Spaln_aa2Genome ATGCTCGCAGTGGAAGGAGTCGTGCCAGTGGCTCGTATGAAGAACAAGATGTGGCCAACGGAATCAACCAGAATGTGGCCCTGGCCATAGCGGGGAATCACTTTAATTTGAAGACCAGTGGAGCAATGCTGTCTTCC actagaccacccacataataattacagactctcttttgtctgccctgcagATGCTCATAGTTGGAGAAGTTGTGCCAGTGGCTCATATGATGAGCAGGATGTGGCCAATGGAATTAACCAAAATGCTGCCCTGACAATAGCAGGAAACCACTTTAATCTAAAGACGAGTGGTGCAATGCTATCTTGCgcaatgctatcttccttggtgcgtgtgcctctacaactcctgcctagtaagagtgcctgtacatcttt Alignment from Spaln_nt2Genome ATGCTCGCAGTGGAAGGAGTCGTGCCAGTGGCTCGTATGAAGAACAAGATGTGGCCAACGGAATCAACCAGAATGTGGCCCTGGCCATAGCGGGGAATCACTTTAATTTGAAGACCAGTGGAGCAATGCTGTCTTCC actagaccacccacataataattacagactctcttttgtctgccctgcagATGCTCATAGTTGGAGAAGTTGTGCCAGTGGCTCATATGATGAGCAGGATGTGGCCAATGGAATTAACCAAAATGCTGCCCTGACAATAGCAGGAAACCACTTTAATCTAAAGACGAGTGGTGCAATGCTATCTTGCgcaatgctatcttccttggtgcgtgtgcctctacaactcctgcctagtaagagtgcctgtacatcttt Alignment from Pairagon ATGCTCGCAGTGGAAGGAGTCGTGCCAGTGGCTCGTATGAAGAACAAGATGTGGCCAACGGAATCAACCAGAATGTGGCCCTGGCCATAGCGGGGAATCACTTTAATTTGAAGACCAGTG---------------GAGCAATGCTGTCTTCCTTG actagaccacccacataataattacagactctcttttgtctgccctgcagATGCTCATAGTTGGAGAAGTTGTGCCAGTGGCTCATATGATGAGCAGGATGTGGCCAATGGAATTAACCAAAATGCTGCCCTGACAATAGCAGGAAACCACTTTAATCTAAAGACGAGTGGTGCAATGCTATCTTGCGCAATGCTATCTTCCTTGgtgcgtgtgcctctacaactcctgcctagtaagagtgcctgtacatcttt Alignment from Exonerate_protein2genome ATGCTCGCAGTGGAAGGAGTCGTGCCAGTGGCTCGTATGAAGAACAAGATGTGGCCAACGGAATCAACCAGAATGTGGCCCTGGCCATAGCGGGGAATCACTTTAATTTGAAGACCAGTGGAGCAATGCTGTCTTCCTTG actagaccacccacataataattacagactctcttttgtctgccctgcagATGCTCATAGTTGGAGAAGTTGTGCCAGTGGCTCATATGATGAGCAGGATGTGGCCAATGGAATTAACCAAAATGCTGCCCTGACAATAGCAGGAAACCACTTTAATCTAAAGACGAGTGGTGCAATGCTATCTTGCGCAatgctatcttccttggtgcgtgtgcctctacaactcctgcctagtaagagtgcctgtacatcttt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATGCTCGCAGTGGAAGGAGTCGTGCCAGTGGCTCGTATGAAGAACAAGATGTGGCCAACGGAATCAACCAGAATGTGGCCCTGGCCATAGCGGGGAATCACTTTAATTTGAAGACCAGTGGA---------------GCAATGCTGTCTTCCTTG actagaccacccacataataattacagactctcttttgtctgccctgcagATGCTCATAGTTGGAGAAGTTGTGCCAGTGGCTCATATGATGAGCAGGATGTGGCCAATGGAATTAACCAAAATGCTGCCCTGACAATAGCAGGAAACCACTTTAATCTAAAGACGAGTGGTGCAATGCTATCTTGCGCAATGCTATCTTCCTTGgtgcgtgtgcctctacaactcctgcctagtaagagtgcctgtacatcttt #### Dock8_ID5412_31 --> 0 - 0 Original Alignment CCCTATAAGCAGTACAACATGCTGAATGCAGACACCACCCGCCACCTCATGATTTGCTTCCTGTGGATCATGAAAAATGCTGATCAGAGCCTCATCAGGAAGTGGATCGCTGACCTGCCTTCCATGCAGCTCAATAGGATTCTGGACCTGCTGTTCATCTGTGTCTCCTGCTTTGAATACAAG ttctacactctagccagactactctgagttccatgctttttgtcttgcagCCCTATAAGCAGTATAATATGCTGAATGCAGATGCTACTCACCACCTCATGATCTGCTTTCTGTGGATCATGAGGAATGCTGATCAGAGCCTCATCAGGAGGTGGATTGCTGACCTGCCTTCCATGCAGCTCAACAGGGTTTTAGACCTGCTGTTCATCTGTGTCTCCTGTTTTGAATACAAGgtaagcagtgggactgaaacactagttagctgttccatttctaccttctt Alignment from CESAR CCCTATAAGCAGTACAACATGCTGAATGCAGACACCACCCGCCACCTCATGATTTGCTTCCTGTGGATCATGAAAAATGCTGATCAGAGCCTCATCAGGAAGTGGATCGCTGACCTGCCTTCCATGCAGCTCAATAGGATTCTGGACCTGCTGTTCATCTGTGTCTCCTGCTTTGAATACAAG ttctacactctagccagactactctgagttccatgctttttgtcttgcagCCCTATAAGCAGTATAATATGCTGAATGCAGATGCTACTCACCACCTCATGATCTGCTTTCTGTGGATCATGAGGAATGCTGATCAGAGCCTCATCAGGAGGTGGATTGCTGACCTGCCTTCCATGCAGCTCAACAGGGTTTTAGACCTGCTGTTCATCTGTGTCTCCTGTTTTGAATACAAGgtaagcagtgggactgaaacactagttagctgttccatttctaccttctt Alignment from Spaln_aa2Genome TTGCCCTATAAGCAGTACAACATGCTGAATGCAGACACCACCCGCCACCTCATGATTTGCTTCCTGTGGATCATGAAAAATGCTGATCAGAGCCTCATCAGGAAGTGGATCGCTGACCTGCCTTCCATGCAGCTCAATAGGATTCTGGACCTGCTGTTCATCTGTGTCTCCTGCTTTGAATACAAG ttctacactctagccagactactctgagttccatgctttttgtcttgcag---CCCTATAAGCAGTATAATATGCTGAATGCAGATGCTACTCACCACCTCATGATCTGCTTTCTGTGGATCATGAGGAATGCTGATCAGAGCCTCATCAGGAGGTGGATTGCTGACCTGCCTTCCATGCAGCTCAACAGGGTTTTAGACCTGCTGTTCATCTGTGTCTCCTGTTTTGAATACAAGgtaagcagtgggactgaaacactagttagctgttccatttctaccttctt Alignment from Spaln_nt2Genome CCCTATAAGCAGTACAACATGCTGAATGCAGACACCACCCGCCACCTCATGATTTGCTTCCTGTGGATCATGAAAAATGCTGATCAGAGCCTCATCAGGAAGTGGATCGCTGACCTGCCTTCCATGCAGCTCAATAGGATTCTGGACCTGCTGTTCATCTGTGTCTCCTGCTTTGAATACAAG ttctacactctagccagactactctgagttccatgctttttgtcttgcagCCCTATAAGCAGTATAATATGCTGAATGCAGATGCTACTCACCACCTCATGATCTGCTTTCTGTGGATCATGAGGAATGCTGATCAGAGCCTCATCAGGAGGTGGATTGCTGACCTGCCTTCCATGCAGCTCAACAGGGTTTTAGACCTGCTGTTCATCTGTGTCTCCTGTTTTGAATACAAGgtaagcagtgggactgaaacactagttagctgttccatttctaccttctt Alignment from Pairagon CCCTATAAGCAGTACAACATGCTGAATGCAGACACCACCCGCCACCTCATGATTTGCTTCCTGTGGATCATGAAAAATGCTGATCAGAGCCTCATCAGGAAGTGGATCGCTGACCTGCCTTCCATGCAGCTCAATAGGATTCTGGACCTGCTGTTCATCTGTGTCTCCTGCTTTGAATACAAG ttctacactctagccagactactctgagttccatgctttttgtcttgcagCCCTATAAGCAGTATAATATGCTGAATGCAGATGCTACTCACCACCTCATGATCTGCTTTCTGTGGATCATGAGGAATGCTGATCAGAGCCTCATCAGGAGGTGGATTGCTGACCTGCCTTCCATGCAGCTCAACAGGGTTTTAGACCTGCTGTTCATCTGTGTCTCCTGTTTTGAATACAAGgtaagcagtgggactgaaacactagttagctgttccatttctaccttctt Alignment from Exonerate_protein2genome CCCTATAAGCAGTACAACATGCTGAATGCAGACACCACCCGCCACCTCATGATTTGCTTCCTGTGGATCATGAAAAATGCTGATCAGAGCCTCATCAGGAAGTGGATCGCTGACCTGCCTTCCATGCAGCTCAATAGGATTCTGGACCTGCTGTTCATCTGTGTCTCCTGCTTTGAATACAAG ttctacactctagccagactactctgagttccatgctttttgtcttgcagCCCTATAAGCAGTATAATATGCTGAATGCAGATGCTACTCACCACCTCATGATCTGCTTTCTGTGGATCATGAGGAATGCTGATCAGAGCCTCATCAGGAGGTGGATTGCTGACCTGCCTTCCATGCAGCTCAACAGGGTTTTAGACCTGCTGTTCATCTGTGTCTCCTGTTTTGAATACAAGgtaagcagtgggactgaaacactagttagctgttccatttctaccttctt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCCTATAAGCAGTACAACATGCTGAATGCAGACACCACCCGCCACCTCATGATTTGCTTCCTGTGGATCATGAAAAATGCTGATCAGAGCCTCATCAGGAAGTGGATCGCTGACCTGCCTTCCATGCAGCTCAATAGGATTCTGGACCTGCTGTTCATCTGTGTCTCCTGCTTTGAATACAAG ttctacactctagccagactactctgagttccatgctttttgtcttgcagCCCTATAAGCAGTATAATATGCTGAATGCAGATGCTACTCACCACCTCATGATCTGCTTTCTGTGGATCATGAGGAATGCTGATCAGAGCCTCATCAGGAGGTGGATTGCTGACCTGCCTTCCATGCAGCTCAACAGGGTTTTAGACCTGCTGTTCATCTGTGTCTCCTGTTTTGAATACAAGgtaagcagtgggactgaaacactagttagctgttccatttctaccttctt #### Dock8_ID5416_34 --> 1 - 0 Original Alignment aACAAAGGCAGAGTTAGATCAAGAAGCCTTGATCAGTGGCAACCTGGCTACAGAAGCTAATTTGATCATCCTGGATATGCAGGAGAACATCATCCAG cacattagtcagctaatacctggcttgggactgtaaattgttctttccagaACAAAGGCAGAGCTAGATCATGAAGCCTTGATCAGTGGCAACCTGGCTACAGAAGCTAATTCAATTATTCTGGATATGCAGGAGAACATCATCCAGgtgggtgaccaatgtgattcagagaaatatgtttacagaggaagtgtcag Alignment from CESAR aACAAAGGCAGAGTTAGATCAAGAAGCCTTGATCAGTGGCAACCTGGCTACAGAAGCTAATTTGATCATCCTGGATATGCAGGAGAACATCATCCAG cacattagtcagctaatacctggcttgggactgtaaattgttctttccagaACAAAGGCAGAGCTAGATCATGAAGCCTTGATCAGTGGCAACCTGGCTACAGAAGCTAATTCAATTATTCTGGATATGCAGGAGAACATCATCCAGgtgggtgaccaatgtgattcagagaaatatgtttacagaggaagtgtcag Alignment from Spaln_aa2Genome AACAAAGGCAGAGTTAGATCAAGAAGCCTTGATCAGTGGCAACCTGGCTACAGAAGCTAATTTGATCATCCTGGATATGCAGGAGAACATCATCCAG cacattagtcagctaatacctggcttgggactgtaaattgttctttccagAACAAAGGCAGAGCTAGATCATGAAGCCTTGATCAGTGGCAACCTGGCTACAGAAGCTAATTCAATTATTCTGGATATGCAGGAGAACATCATCCAGgtgggtgaccaatgtgattcagagaaatatgtttacagaggaagtgtcag Alignment from Spaln_nt2Genome AACAAAGGCAGAGTTAGATCAAGAAGCCTTGATCAGTGGCAACCTGGCTACAGAAGCTAATTTGATCATCCTGGATATGCAGGAGAACATCATCCAG cacattagtcagctaatacctggcttgggactgtaaattgttctttccagAACAAAGGCAGAGCTAGATCATGAAGCCTTGATCAGTGGCAACCTGGCTACAGAAGCTAATTCAATTATTCTGGATATGCAGGAGAACATCATCCAGgtgggtgaccaatgtgattcagagaaatatgtttacagaggaagtgtcag Alignment from Pairagon AACAAAGGCAGAGTTAGATCAAGAAGCCTTGATCAGTGGCAACCTGGCTACAGAAGCTAATTTGATCATCCTGGATATGCAGGAGAACATCATCCAG cacattagtcagctaatacctggcttgggactgtaaattgttctttccagAACAAAGGCAGAGCTAGATCATGAAGCCTTGATCAGTGGCAACCTGGCTACAGAAGCTAATTCAATTATTCTGGATATGCAGGAGAACATCATCCAGgtgggtgaccaatgtgattcagagaaatatgtttacagaggaagtgtcag Alignment from Exonerate_protein2genome AACAAAGGCAGAGTTAGATCAAGAAGCCTTGATCAGTGGCAACCTGGCTACAGAAGCTAATTTGATCATCCTGGATATGCAGGAGAACATCATCCAG cacattagtcagctaatacctggcttgggactgtaaattgttctttccagAACAAAGGCAGAGCTAGATCATGAAGCCTTGATCAGTGGCAACCTGGCTACAGAAGCTAATTCAATTATTCTGGATATGCAGGAGAACATCATCCAGgtgggtgaccaatgtgattcagagaaatatgtttacagaggaagtgtcag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AACAAAGGCAGAGTTAGATCAAGAAGCCTTGATCAGTGGCAACCTGGCTACAGAAGCTAATTTGATCATCCTGGATATGCAGGAGAACATCATCCAG cacattagtcagctaatacctggcttgggactgtaaattgttctttccagAACAAAGGCAGAGCTAGATCATGAAGCCTTGATCAGTGGCAACCTGGCTACAGAAGCTAATTCAATTATTCTGGATATGCAGGAGAACATCATCCAGgtgggtgaccaatgtgattcagagaaatatgtttacagaggaagtgtcag #### Dock8_ID5421_39 --> 1 - 0 Original Alignment aATTGCCAAGAGCTACCAGGCATCGCCTGACCTGCGGCTGACTTGGCTCCAGAACATGGCAGAGAAACACACTAAGAAGAAGTGCTTCACAGAGGCCGCCATGTGCCTGGTGCATGCAGCCGCCCTGGTGGCCGAGTACCTGAGCATGCTGGAGGACCACAGCTACCTGCCGGTGGGCAGCGTCAGCTTTCAG tgaattgatgttagggggttatccatgactgctgtggtctctccctccagaATTGTGAAGAGTTACCAGGCCTCACCCGATCTACGGCTGACTTGGCTCCAAAACATGGCAGAGAAGCACTCAAAGAAGAAATGCTTCACAGAGGCTGCTATGTGTCGAATTCATGCAGCTGCCCTAGTGGCAGAGTACCTGAGTATGCTAGAGGATCACCAATACCTGCCT---GGAAGTATAAGCTTCCAAgtatcctaagtaaacttggcaatgtataaatcagaaagttagactcctca Alignment from CESAR aATTGCCAAGAGCTACCAGGCATCGCCTGACCTGCGGCTGACTTGGCTCCAGAACATGGCAGAGAAACACACTAAGAAGAAGTGCTTCACAGAGGCCGCCATGTGCCTGGTGCATGCAGCCGCCCTGGTGGCCGAGTACCTGAGCATGCTGGAGGACCACAGCTACCTGCCGGTGGGCAGCGTCAGCTTTCAG tgaattgatgttagggggttatccatgactgctgtggtctctccctccagaATTGTGAAGAGTTACCAGGCCTCACCCGATCTACGGCTGACTTGGCTCCAAAACATGGCAGAGAAGCACTCAAAGAAGAAATGCTTCACAGAGGCTGCTATGTGTCGAATTCATGCAGCTGCCCTAGTGGCAGAGTACCTGAGTATGCTAGAGGATCACCAATACCTGCCT---GGAAGTATAAGCTTCCAAgtatcctaagtaaacttggcaatgtataaatcagaaagttagactcctca Alignment from Spaln_aa2Genome AATTGCCAAGAGCTACCAGGCATCGCCTGACCTGCGGCTGACTTGGCTCCAGAACATGGCAGAGAAACACACTAAGAAGAAGTGCTTCACAGAGGCCGCCATGTGCCTGGTGCATGCAGCCGCCCTGGTGGCCGAGTACCTGAGCATGCTGGAGGACCACAGCTACCTGCCGGTGGGCAGCGTCAGCTTTCAG tgaattgatgttagggggttatccatgactgctgtggtctctccctccagAATTGTGAAGAGTTACCAGGCCTCACCCGATCTACGGCTGACTTGGCTCCAAAACATGGCAGAGAAGCACTCAAAGAAGAAATGCTTCACAGAGGCTGCTATGTGTCGAATTCATGCAGCTGCCCTAGTGGCAGAGTACCTGAGTATGCTAGAGGATCACCAATACCTGCCT---GGAAGTATAAGCTTCCAAgtatcctaagtaaacttggcaatgtataaatcagaaagttagactcctca Alignment from Spaln_nt2Genome AATTGCCAAGAGCTACCAGGCATCGCCTGACCTGCGGCTGACTTGGCTCCAGAACATGGCAGAGAAACACACTAAGAAGAAGTGCTTCACAGAGGCCGCCATGTGCCTGGTGCATGCAGCCGCCCTGGTGGCCGAGTACCTGAGCATGCTGGAGGACCACAGCTACCTGCCGGTGGGCAGCGTCAGCTTTCAG tgaattgatgttagggggttatccatgactgctgtggtctctccctccagAATTGTGAAGAGTTACCAGGCCTCACCCGATCTACGGCTGACTTGGCTCCAAAACATGGCAGAGAAGCACTCAAAGAAGAAATGCTTCACAGAGGCTGCTATGTGTCGAATTCATGCAGCTGCCCTAGTGGCAGAGTACCTGAGTATGCTAGAGGATCACCAATACCTGCC---TGGAAGTATAAGCTTCCAAgtatcctaagtaaacttggcaatgtataaatcagaaagttagactcctca Alignment from Pairagon AATTGCCAAGAGCTACCAGGCATCGCCTGACCTGCGGCTGACTTGGCTCCAGAACATGGCAGAGAAACACACTAAGAAGAAGTGCTTCACAGAGGCCGCCATGTGCCTGGTGCATGCAGCCGCCCTGGTGGCCGAGTACCTGAGCATGCTGGAGGACCACAGCTACCTGCCGGTGGGCAGCGTCAGCTTTCAG tgaattgatgttagggggttatccatgactgctgtggtctctccctccagAATTGTGAAGAGTTACCAGGCCTCACCCGATCTACGGCTGACTTGGCTCCAAAACATGGCAGAGAAGCACTCAAAGAAGAAATGCTTCACAGAGGCTGCTATGTGTCGAATTCATGCAGCTGCCCTAGTGGCAGAGTACCTGAGTATGCTAGAGGATCACCAATACCTGCC---TGGAAGTATAAGCTTCCAAgtatcctaagtaaacttggcaatgtataaatcagaaagttagactcctca Alignment from Exonerate_protein2genome AATTGCCAAGAGCTACCAGGCATCGCCTGACCTGCGGCTGACTTGGCTCCAGAACATGGCAGAGAAACACACTAAGAAGAAGTGCTTCACAGAGGCCGCCATGTGCCTGGTGCATGCAGCCGCCCTGGTGGCCGAGTACCTGAGCATGCTGGAGGACCACAGCTACCTGCCGGTGGGCAGCGTCAGCTTTCAG tgaattgatgttagggggttatccatgactgctgtggtctctccctccagAATTGTGAAGAGTTACCAGGCCTCACCCGATCTACGGCTGACTTGGCTCCAAAACATGGCAGAGAAGCACTCAAAGAAGAAATGCTTCACAGAGGCTGCTATGTGTCGAATTCATGCAGCTGCCCTAGTGGCAGAGTACCTGAGTATGCTAGAGGATCACCAATACCTGCCT---GGAAGTATAAGCTTCCAAgtatcctaagtaaacttggcaatgtataaatcagaaagttagactcctca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AATTGCCAAGAGCTACCAGGCATCGCCTGACCTGCGGCTGACTTGGCTCCAGAACATGGCAGAGAAACACACTAAGAAGAAGTGCTTCACAGAGGCCGCCATGTGCCTGGTGCATGCAGCCGCCCTGGTGGCCGAGTACCTGAGCATGCTGGAGGACCACAGCTACCTGCCGGTGGGCAGCGTCAGCTTTCAG tgaattgatgttagggggttatccatgactgctgtggtctctccctccagAATTGTGAAGAGTTACCAGGCCTCACCCGATCTACGGCTGACTTGGCTCCAAAACATGGCAGAGAAGCACTCAAAGAAGAAATGCTTCACAGAGGCTGCTATGTGTCGAATTCATGCAGCTGCCCTAGTGGCAGAGTACCTGAGTATGCTAGAGGATCACCAATACCTGCCT---GGAAGTATAAGCTTCCAAgtatcctaagtaaacttggcaatgtataaatcagaaagttagactcctca #### Dock8_ID5423_41 --> 0 - 0 Original Alignment GGAGGCTTGTACGAGACGGTTAATGAAGTCTACAAGCTGGTCATCCCTATCCTGGAGGCACACAGAGATTTCCGGAAGCTGACCTCCACTCACGACAAGCTGCAGAAGGCCTTCGATAACATCATCAACAAG ccttgagttaacaccagtgtcataagcataaatttatctttttggaacagGGAGGCTTGTATGAGACAGTCAATGAAGTCTACAAGCTGATCATCCCTATCCTGGAGGCACAAAAAGACCTCCATAAGCTAACCTCCACACATGATAAGCTGCAGAAGGCCTTTGATAACATCACCAATAAGgtgagtcaggctaccaccatctccctgatcccccccatgttttgtaaatc Alignment from CESAR GGAGGCTTGTACGAGACGGTTAATGAAGTCTACAAGCTGGTCATCCCTATCCTGGAGGCACACAGAGATTTCCGGAAGCTGACCTCCACTCACGACAAGCTGCAGAAGGCCTTCGATAACATCATCAACAAG ccttgagttaacaccagtgtcataagcataaatttatctttttggaacagGGAGGCTTGTATGAGACAGTCAATGAAGTCTACAAGCTGATCATCCCTATCCTGGAGGCACAAAAAGACCTCCATAAGCTAACCTCCACACATGATAAGCTGCAGAAGGCCTTTGATAACATCACCAATAAGgtgagtcaggctaccaccatctccctgatcccccccatgttttgtaaatc Alignment from Spaln_aa2Genome GGAGGCTTGTACGAGACGGTTAATGAAGTCTACAAGCTGGTCATCCCTATCCTGGAGGCACACAGAGATTTCCGGAAGCTGACCTCCACTCACGACAAGCTGCAGAAGGCCTTCGATAACATCATCAACAAG ccttgagttaacaccagtgtcataagcataaatttatctttttggaacagGGAGGCTTGTATGAGACAGTCAATGAAGTCTACAAGCTGATCATCCCTATCCTGGAGGCACAAAAAGACCTCCATAAGCTAACCTCCACACATGATAAGCTGCAGAAGGCCTTTGATAACATCACCAATAAGgtgagtcaggctaccaccatctccctgatcccccccatgttttgtaaatc Alignment from Spaln_nt2Genome GGAGGCTTGTACGAGACGGTTAATGAAGTCTACAAGCTGGTCATCCCTATCCTGGAGGCACACAGAGATTTCCGGAAGCTGACCTCCACTCACGACAAGCTGCAGAAGGCCTTCGATAACATCATCAACAAG ccttgagttaacaccagtgtcataagcataaatttatctttttggaacagGGAGGCTTGTATGAGACAGTCAATGAAGTCTACAAGCTGATCATCCCTATCCTGGAGGCACAAAAAGACCTCCATAAGCTAACCTCCACACATGATAAGCTGCAGAAGGCCTTTGATAACATCACCAATAAGgtgagtcaggctaccaccatctccctgatcccccccatgttttgtaaatc Alignment from Pairagon GGAGGCTTGTACGAGACGGTTAATGAAGTCTACAAGCTGGTCATCCCTATCCTGGAGGCACACAGAGATTTCCGGAAGCTGACCTCCACTCACGACAAGCTGCAGAAGGCCTTCGATAACATCATCAACAAG ccttgagttaacaccagtgtcataagcataaatttatctttttggaacagGGAGGCTTGTATGAGACAGTCAATGAAGTCTACAAGCTGATCATCCCTATCCTGGAGGCACAAAAAGACCTCCATAAGCTAACCTCCACACATGATAAGCTGCAGAAGGCCTTTGATAACATCACCAATAAGgtgagtcaggctaccaccatctccctgatcccccccatgttttgtaaatc Alignment from Exonerate_protein2genome GGAGGCTTGTACGAGACGGTTAATGAAGTCTACAAGCTGGTCATCCCTATCCTGGAGGCACACAGAGATTTCCGGAAGCTGACCTCCACTCACGACAAGCTGCAGAAGGCCTTCGATAACATCATCAACAAG ccttgagttaacaccagtgtcataagcataaatttatctttttggaacagGGAGGCTTGTATGAGACAGTCAATGAAGTCTACAAGCTGATCATCCCTATCCTGGAGGCACAAAAAGACCTCCATAAGCTAACCTCCACACATGATAAGCTGCAGAAGGCCTTTGATAACATCACCAATAAGgtgagtcaggctaccaccatctccctgatcccccccatgttttgtaaatc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGAGGCTTGTACGAGACGGTTAATGAAGTCTACAAGCTGGTCATCCCTATCCTGGAGGCACACAGAGATTTCCGGAAGCTGACCTCCACTCACGACAAGCTGCAGAAGGCCTTCGATAACATCATCAACAAG ccttgagttaacaccagtgtcataagcataaatttatctttttggaacagGGAGGCTTGTATGAGACAGTCAATGAAGTCTACAAGCTGATCATCCCTATCCTGGAGGCACAAAAAGACCTCCATAAGCTAACCTCCACACATGATAAGCTGCAGAAGGCCTTTGATAACATCACCAATAAGgtgagtcaggctaccaccatctccctgatcccccccatgttttgtaaatc #### Dpf2_ID1303_10 --> 0 - 1 Original Alignment GACCAGCTACTTTTCTGTGATGACTGTGACCGTGGCTACCACATGTACTGTCTCACTCCTTCCATGTCTGAGCCTCCTGAAg aggctagtaatggagctaaagcatacactaaatattttcttttctcatagGGACAGCTGCTTTTTTGTGACGATTGTGACCATGGTTACCACATGTTCTGTCCCACTCCTTCCATATCTGAGCCTCCTAAAggtgcgcagcatgtacaatctccttaggctactttaccctaggaaatgcga Alignment from CESAR GACCAGCTACTTTTCTGTGATGACTGTGACCGTGGCTACCACATGTACTGTCTCACTCCTTCCATGTCTGAGCCTCCTGAAg aggctagtaatggagctaaagcatacactaaatattttcttttctcatagGGACAGCTGCTTTTTTGTGACGATTGTGACCATGGTTACCACATGTTCTGTCCCACTCCTTCCATATCTGAGCCTCCTAAAggtgcgcagcatgtacaatctccttaggctactttaccctaggaaatgcga Alignment from Spaln_aa2Genome GACCAGCTACTTTTCTGTGATGACTGTGACCGTGGCTACCACATGTACTGTCTCACTCCTTCCATGTCTGAGCCTCCTGAAG aggctagtaatggagctaaagcatacactaaatattttcttttctcatagGGACAGCTGCTTTTTTGTGACGATTGTGACCATGGTTACCACATGTTCTGTCCCACTCCTTCCATATCTGAGCCTCCTAAAGgtgcgcagcatgtacaatctccttaggctactttaccctaggaaatgcga Alignment from Spaln_nt2Genome GACCAGCTACTTTTCTGTGATGACTGTGACCGTGGCTACCACATGTACTGTCTCACTCCTTCCATGTCTGAGCCTCCTGAAG aggctagtaatggagctaaagcatacactaaatattttcttttctcatagGGACAGCTGCTTTTTTGTGACGATTGTGACCATGGTTACCACATGTTCTGTCCCACTCCTTCCATATCTGAGCCTCCTAAAGgtgcgcagcatgtacaatctccttaggctactttaccctaggaaatgcga Alignment from Pairagon GACCAGCTACTTTTCTGTGATGACTGTGACCGTGGCTACCACATGTACTGTCTCACTCCTTCCATGTCTGAGCCTCCTGAAG aggctagtaatggagctaaagcatacactaaatattttcttttctcatagGGACAGCTGCTTTTTTGTGACGATTGTGACCATGGTTACCACATGTTCTGTCCCACTCCTTCCATATCTGAGCCTCCTAAAGgtgcgcagcatgtacaatctccttaggctactttaccctaggaaatgcga Alignment from Exonerate_protein2genome GACCAGCTACTTTTCTGTGATGACTGTGACCGTGGCTACCACATGTACTGTCTCACTCCTTCCATGTCTGAGCCTCCTGAAG aggctagtaatggagctaaagcatacactaaatattttcttttctcatagGGACAGCTGCTTTTTTGTGACGATTGTGACCATGGTTACCACATGTTCTGTCCCACTCCTTCCATATCTGAGCCTCCTAAAGgtgcgcagcatgtacaatctccttaggctactttaccctaggaaatgcga Alignment from Exonerate_coding2genome GACCAGCTACTTTTCTGTGATGACTGTGACCGTGGCTACCACATGTACTGTCTCACTCCTTCCATGTCTGAGCCTCCTGAAG aggctagtaatggagctaaagcatacactaaatattttcttttctcatagGGACAGCTGCTTTTTTGTGACGATTGTGACCATGGTTACCACATGTTCTGTCCCACTCCTTCCATATCTGAGCCTCCTAAAGgtgcgcagcatgtacaatctccttaggctactttaccctaggaaatgcga Alignment from GeneWise GACCAGCTACTTTTCTGTGATGACTGTGACCGTGGCTACCACATGTACTGTCTCACTCCTTCCATGTCTGAGCCTCCTGAAG aggctagtaatggagctaaagcatacactaaatattttcttttctcatagGGACAGCTGCTTTTTTGTGACGATTGTGACCATGGTTACCACATGTTCTGTCCCACTCCTTCCATATCTGAGCCTCCTAAAGgtgcgcagcatgtacaatctccttaggctactttaccctaggaaatgcga #### Dpf2_ID1305_8 --> 2 - 1 Original Alignment ccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAg agagacatgctgacaaaattaaagaaaaacctgcatgttgatacccgcagccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCTGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAggtattcctgtgatcctgaaacctactatacactccatgctccaggtccaa Alignment from CESAR ccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAg agagacatgctgacaaaattaaagaaaaacctgcatgttgatacccgcagccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCTGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAggtattcctgtgatcctgaaacctactatacactccatgctccaggtccaa Alignment from Spaln_aa2Genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG agagacatgctgacaaaattaaagaaaaacctgcatgttgatacccgcagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCTGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtattcctgtgatcctgaaacctactatacactccatgctccaggtccaa Alignment from Spaln_nt2Genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG agagacatgctgacaaaattaaagaaaaacctgcatgttgatacccgcagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCTGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtattcctgtgatcctgaaacctactatacactccatgctccaggtccaa Alignment from Pairagon CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG agagacatgctgacaaaattaaagaaaaacctgcatgttgatacccgcagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCTGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtattcctgtgatcctgaaacctactatacactccatgctccaggtccaa Alignment from Exonerate_protein2genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG agagacatgctgacaaaattaaagaaaaacctgcatgttgatacccgcagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCTGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtattcctgtgatcctgaaacctactatacactccatgctccaggtccaa Alignment from Exonerate_coding2genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG agagacatgctgacaaaattaaagaaaaacctgcatgttgatacccgcagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCTGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtattcctgtgatcctgaaacctactatacactccatgctccaggtccaa Alignment from GeneWise CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG agagacatgctgacaaaattaaagaaaaacctgcatgttgatacccgcagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCTGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtattcctgtgatcctgaaacctactatacactccatgctccaggtccaa #### Dpf2_ID1309_5 --> 0 - 0 Original Alignment CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTG aatttagttatctgtgagctatacatgtaatccaatctgcatttttgcagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTGGATGATGAGGACTATGATGAAGATACACCAAAGCGTCGGGGAAAGGGCAAGTCCAAGgtgagcagtttctcttcctgctccctccttctctccagGGTACAGGTGTT Alignment from CESAR CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTG aatttagttatctgtgagctatacatgtaatccaatctgcatttttgcagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTGGATGATGAGGACTATGATGAAGATACACCAAAGCGTCGGGGAAAGGGCAAGTCCAAGgtgagcagtttctcttgtgactgtctttctctctccagGGTACAGGTGTT Alignment from Spaln_aa2Genome CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTG aatttagttatctgtgagctatacatgtaatccaatctgcatttttgcagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTGGATGATGAGGACTATGATGAAGATACACCAAAGCGTCGGGGAAAGGGCAAGTCCAAGgtgagcagtttctcttcctgctccctccttctctccagGGTACAGGTGTT Alignment from Spaln_nt2Genome CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTG aatttagttatctgtgagctatacatgtaatccaatctgcatttttgcagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTGGATGATGAGGACTATGATGAAGATACACCAAAGCGTCGGGGAAAGGGCAAGTCCAAGgtgagcagtttctcttcctgctccctccttctctccagGGTACAGGTGTT Alignment from Pairagon CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTG aatttagttatctgtgagctatacatgtaatccaatctgcatttttgcagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTGGATGATGAGGACTATGATGAAGATACACCAAAGCGTCGGGGAAAGGGCAAGTCCAAGgtgagcagtttctcttcctgctccctccttctctccagGGTACAGGTGTT Alignment from Exonerate_protein2genome CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTG aatttagttatctgtgagctatacatgtaatccaatctgcatttttgcagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTGGATGATGAGGACTATGATGAAGATACACCAAAGCGTCGGGGAAAGGGCAAGTCCAAGgtgagcagtttctcttcctgctccctccttctctccagGGTACAGGTGTT Alignment from Exonerate_coding2genome CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTG aatttagttatctgtgagctatacatgtaatccaatctgcatttttgcagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTGGATGATGAGGACTATGATGAAGATACACCAAAGCGTCGGGGAAAGGGCAAGTCCAAGgtgagcagtttctcttcctgctccctccttctctccagGGTACAGGTGTT Alignment from GeneWise CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTG aatttagttatctgtgagctatacatgtaatccaatctgcatttttgcagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTGGATGATGAGGACTATGATGAAGATACACCAAAGCGTCGGGGAAAGGGCAAGTCCAAGgtgagcagtttctcttcctgctccctccttctctccagGGTACAGGTGTT #### Dpf2_ID1311_3 --> 2 - 1 Original Alignment gaTTGGCCTCTGGACAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAGGATCCCAGGCTTTCTTTCCCATCGATTAAACCAg tcttttgggctttgtgtgagtgttcaattgtcattgtctaatatgttcaggaCTAACTTCGGGCCAGTTATACTCATATCCTGCTAGACGTTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAAGATCCCTGGTTTTCTTTTCCATCCATCAAGCCAggcgagtactagactagcagggcagagattgttaagttgatttacttagca Alignment from CESAR gaTTGGCCTCTGGACAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAGGATCCCAGGCTTTCTTTCCCATCGATTAAACCAg tcttttgggctttgtgtgagtgttcaattgtcattgtctaatatgttcaggaCTAACTTCGGGCCAGTTATACTCATATCCTGCTAGACGTTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAAGATCCCTGGTTTTCTTTTCCATCCATCAAGCCAggcgagtactagactagcagggcagagattgttaagttgatttacttagca Alignment from Spaln_aa2Genome GATTGGCCTCTGGACAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAGGATCCCAGGCTTTCTTTCCCATCGATTAAACCAG tcttttgggctttgtgtgagtgttcaattgtcattgtctaatatgttcagGACTAACTTCGGGCCAGTTATACTCATATCCTGCTAGACGTTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAAGATCCCTGGTTTTCTTTTCCATCCATCAAGCCAGgcgagtactagactagcagggcagagattgttaagttgatttacttagca Alignment from Spaln_nt2Genome GATTGGCCTCTGGACAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAGGATCCCAGGCTTTCTTTCCCATCGATTAAACCAG tcttttgggctttgtgtgagtgttcaattgtcattgtctaatatgttcagGACTAACTTCGGGCCAGTTATACTCATATCCTGCTAGACGTTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAAGATCCCTGGTTTTCTTTTCCATCCATCAAGCCAGgcgagtactagactagcagggcagagattgttaagttgatttacttagca Alignment from Pairagon GATTGGCCTCTGGACAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAGGATCCCAGGCTTTCTTTCCCATCGATTAAACCAG tcttttgggctttgtgtgagtgttcaattgtcattgtctaatatgttcagGACTAACTTCGGGCCAGTTATACTCATATCCTGCTAGACGTTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAAGATCCCTGGTTTTCTTTTCCATCCATCAAGCCAGgcgagtactagactagcagggcagagattgttaagttgatttacttagca Alignment from Exonerate_protein2genome GATTGGCCTCTGGACAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAGGATCCCAGGCTTTCTTTCCCATCGATTAAACCAG tcttttgggctttgtgtgagtgttcaattgtcattgtctaatatgttcagGACTAACTTCGGGCCAGTTATACTCATATCCTGCTAGACGTTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAAGATCCCTGGTTTTCTTTTCCATCCATCAAGCCAGgcgagtactagactagcagggcagagattgttaagttgatttacttagca Alignment from Exonerate_coding2genome GATTGGCCTCTGGACAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAGGATCCCAGGCTTTCTTTCCCATCGATTAAACCAG tcttttgggctttgtgtgagtgttcaattgtcattgtctaatatgttcagGACTAACTTCGGGCCAGTTATACTCATATCCTGCTAGACGTTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAAGATCCCTGGTTTTCTTTTCCATCCATCAAGCCAGgcgagtactagactagcagggcagagattgttaagttgatttacttagca Alignment from GeneWise GATTGGCCTCTGGACAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAGGATCCCAGGCTTTCTTTCCCATCGATTAAACCA-GAC- tcttttgggctttgtgtgagtgttcaattgtcattgtctaatatgttcagGACTAACTTCGGGCCAGTTATACTCATATCCTGCTAGACGTTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAAGATCCCTGGTTTTCTTTTCCATCCATCAAGCCAGGCGAgtactagactagcagggcagagattgttaagttgatttacttagca #### Dpp3_ID737_16 --> 0 - 1 Original Alignment GTGCTGAAGTCCACGGGGGACGTGGTCGCGGGGCGGGCCCTGTACGAGGGCTATGCAGCAGTCACTGACGCACCTCCAGAGTGCTTCCTTACCCTAAGGGATACGGTACTGCTGCGCAAGGAGTCCCGGAAGCTTATTGTTCAACCCAACACTCGCCTTGAAg tactagtatggtgccataccctgtgaaatcggtccacctttcccttgcagGTTCTAAAGTCCACAGGGGATGTTGTGGCAGGACGGGCCCTGTATGAAGGCTATGGGGCTGTCACTGATGCCCCTCCAGAGTGCTTTCTCAGC---AGGGATACAGTATTGCTGCATAAGGAGTCTCGAAAGCTCATTGTTAAACCTAATACATGCCTTGAGggtaacaagttccaacatttgactgacaaacagcccccaacttagactggg Alignment from CESAR GTGCTGAAGTCCACGGGGGACGTGGTCGCGGGGCGGGCCCTGTACGAGGGCTATGCAGCAGTCACTGACGCACCTCCAGAGTGCTTCCTTACCCTAAGGGATACGGTACTGCTGCGCAAGGAGTCCCGGAAGCTTATTGTTCAACCCAACACTCGCCTTGAAg tactagtatggtgccataccctgtgaaatcggtccacctttcccttgcagGTTCTAAAGTCCACAGGGGATGTTGTGGCAGGACGGGCCCTGTATGAAGGCTATGGGGCTGTCACTGATGCCCCTCCAGAGTGCTTTCTCAGC---AGGGATACAGTATTGCTGCATAAGGAGTCTCGAAAGCTCATTGTTAAACCTAATACATGCCTTGAGggtaacaagttccaacatttgactgacaaacagcccccaacttagactggg Alignment from Spaln_aa2Genome GTGCTGAAGTCCACGGGGGACGTGGTCGCGGGGCGGGCCCTGTACGAGGGCTATGCAGCAGTCACTGACGCACCTCCAGAGTGCTTCCTTACCCTAAGGGATACGGTACTGCTGCGCAAGGAGTCCCGGAAGCTTATTGTTCAACCCAACACTCGCCTTGAAG tactagtatggtgccataccctgtgaaatcggtccacctttcccttgcagGTTCTAAAGTCCACAGGGGATGTTGTGGCAGGACGGGCCCTGTATGAAGGCTATGGGGCTGTCACTGATGCCCCTCCAGAGTGCTTTCTCAGC---AGGGATACAGTATTGCTGCATAAGGAGTCTCGAAAGCTCATTGTTAAACCTAATACATGCCTTGAGGgtaacaagttccaacatttgactgacaaacagcccccaacttagactggg Alignment from Spaln_nt2Genome GTGCTGAAGTCCACGGGGGACGTGGTCGCGGGGCGGGCCCTGTACGAGGGCTATGCAGCAGTCACTGACGCACCTCCAGAGTGCTTCCTTACCCTAAGGGATACGGTACTGCTGCGCAAGGAGTCCCGGAAGCTTATTGTTCAACCCAACACTCGCCTTGAAG tactagtatggtgccataccctgtgaaatcggtccacctttcccttgcagGTTCTAAAGTCCACAGGGGATGTTGTGGCAGGACGGGCCCTGTATGAAGGCTATGGGGCTGTCACTGATGCCCCTCCAGAGTGCTTTCTCAGC---AGGGATACAGTATTGCTGCATAAGGAGTCTCGAAAGCTCATTGTTAAACCTAATACATGCCTTGAGGgtaacaagttccaacatttgactgacaaacagcccccaacttagactggg Alignment from Pairagon GTGCTGAAGTCCACGGGGGACGTGGTCGCGGGGCGGGCCCTGTACGAGGGCTATGCAGCAGTCACTGACGCACCTCCAGAGTGCTTCCTTACCCTAAGGGATACGGTACTGCTGCGCAAGGAGTCCCGGAAGCTTATTGTTCAACCCAACACTCGCCTTGAAG tactagtatggtgccataccctgtgaaatcggtccacctttcccttgcagGTTCTAAAGTCCACAGGGGATGTTGTGGCAGGACGGGCCCTGTATGAAGGCTATGGGGCTGTCACTGATGCCCCTCCAGAGTGCTTTCTCAGC---AGGGATACAGTATTGCTGCATAAGGAGTCTCGAAAGCTCATTGTTAAACCTAATACATGCCTTGAGGgtaacaagttccaacatttgactgacaaacagcccccaacttagactggg Alignment from Exonerate_protein2genome GTGCTGAAGTCCACGGGGGACGTGGTCGCGGGGCGGGCCCTGTACGAGGGCTATGCAGCAGTCACTGACGCACCTCCAGAGTGCTTCCTTACCCTAAGGGATACGGTACTGCTGCGCAAGGAGTCCCGGAAGCTTATTGTTCAACCCAACACTCGCCTTGAAG tactagtatggtgccataccctgtgaaatcggtccacctttcccttgcagGTTCTAAAGTCCACAGGGGATGTTGTGGCAGGACGGGCCCTGTATGAAGGCTATGGGGCTGTCACTGATGCCCCTCCAGAGTGCTTTCTCAGC---AGGGATACAGTATTGCTGCATAAGGAGTCTCGAAAGCTCATTGTTAAACCTAATACATGCCTTGAGGgtaacaagttccaacatttgactgacaaacagcccccaacttagactggg Alignment from Exonerate_coding2genome GTGCTGAAGTCCACGGGGGACGTGGTCGCGGGGCGGGCCCTGTACGAGGGCTATGCAGCAGTCACTGACGCACCTCCAGAGTGCTTCCTTACCCTAAGGGATACGGTACTGCTGCGCAAGGAGTCCCGGAAGCTTATTGTTCAACCCAACACTCGCCTTGAAG tactagtatggtgccataccctgtgaaatcggtccacctttcccttgcagGTTCTAAAGTCCACAGGGGATGTTGTGGCAGGACGGGCCCTGTATGAAGGCTATGGGGCTGTCACTGATGCCCCTCCAGAGTGCTTTCTCAGC---AGGGATACAGTATTGCTGCATAAGGAGTCTCGAAAGCTCATTGTTAAACCTAATACATGCCTTGAGGgtaacaagttccaacatttgactgacaaacagcccccaacttagactggg Alignment from GeneWise GTGCTGAAGTCCACGGGGGACGTGGTCGCGGGGCGGGCCCTGTACGAGGGCTATGCAGCAGTCACTGACGCACCTCCAGAGTGCTTCCTTACCCTAAGGGATACGGTACTGCTGCGCAAGGAGTCCCGGAAGCTTATTGTTCAACCCAACACTCGCCTTGAAG tactagtatggtgccataccctgtgaaatcggtccacctttcccttgcagGTTCTAAAGTCCACAGGGGATGTTGTGGCAGGACGGGCCCTGTATGAAGGCTATGGGGCTGTCACTGATGCCCCTCCAGAGTGCTTTCTCAGC---AGGGATACAGTATTGCTGCATAAGGAGTCTCGAAAGCTCATTGTTAAACCTAATACATGCCTTGAGGgtaacaagttccaacatttgactgacaaacagcccccaacttagactggg #### Dpp3_ID741_12 --> 0 - 0 Original Alignment GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG catcctaagaagcatagatcaagagtggtggagaatctgttgctttgcagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGGTAATCAACCCCGAGACCGGGGAGCAGgtaagaaatacattatgggatgagggaattgcaatggggtagacagccaa Alignment from CESAR GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG catcctaagaagcatagatcaagagtggtggagaatctgttgctttgcagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGGTAATCAACCCCGAGACCGGGGAGCAGgtaagaaatacattatgggatgagggaattgcaatggggtagacagccaa Alignment from Spaln_aa2Genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG catcctaagaagcatagatcaagagtggtggagaatctgttgctttgcagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGGTAATCAACCCCGAGACCGGGGAGCAGgtaagaaatacattatgggatgagggaattgcaatggggtagacagccaa Alignment from Spaln_nt2Genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG catcctaagaagcatagatcaagagtggtggagaatctgttgctttgcagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGGTAATCAACCCCGAGACCGGGGAGCAGgtaagaaatacattatgggatgagggaattgcaatggggtagacagccaa Alignment from Pairagon GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG catcctaagaagcatagatcaagagtggtggagaatctgttgctttgcagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGGTAATCAACCCCGAGACCGGGGAGCAGgtaagaaatacattatgggatgagggaattgcaatggggtagacagccaa Alignment from Exonerate_protein2genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG catcctaagaagcatagatcaagagtggtggagaatctgttgctttgcagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGGTAATCAACCCCGAGACCGGGGAGCAGgtaagaaatacattatgggatgagggaattgcaatggggtagacagccaa Alignment from Exonerate_coding2genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG catcctaagaagcatagatcaagagtggtggagaatctgttgctttgcagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGGTAATCAACCCCGAGACCGGGGAGCAGgtaagaaatacattatgggatgagggaattgcaatggggtagacagccaa Alignment from GeneWise GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG catcctaagaagcatagatcaagagtggtggagaatctgttgctttgcagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGGTAATCAACCCCGAGACCGGGGAGCAGgtaagaaatacattatgggatgagggaattgcaatggggtagacagccaa #### Dpp3_ID744_9 --> 2 - 1 Original Alignment gcTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCGGGCATCAACATCCCCAACt gacatccatctatagtccagggtgttcgcctattgtttctatgttcccaggaTTTGTAGCTATGGTAAATAAAGTCATGAGTGCCAAGTTTGAGTGGCTTGTCACCAGTACTGAACAGGTGCTGAGGGAGTTGCCACGACCTCTTGCCTTTGAGAAAGATAAATTCCTCACCCCTGACTTCACTTCAATAGATGTCCTGACCTTTGCTGGGTCAGGTATACCTGCAGGCATCAACATCCCTAATtgtaaaacttttccttcagtacaaatacagtccactcctgtctctaaaccc Alignment from CESAR gcTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCGGGCATCAACATCCCCAACt gacatccatctatagtccagggtgttcgcctattgtttctatgttcccaggaTTTGTAGCTATGGTAAATAAAGTCATGAGTGCCAAGTTTGAGTGGCTTGTCACCAGTACTGAACAGGTGCTGAGGGAGTTGCCACGACCTCTTGCCTTTGAGAAAGATAAATTCCTCACCCCTGACTTCACTTCAATAGATGTCCTGACCTTTGCTGGGTCAGGTATACCTGCAGGCATCAACATCCCTAATtgtaaaacttttccttcagtacaaatacagtccactcctggtgggtttact Alignment from Spaln_aa2Genome GCTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCGGGCATCAACATCCCCAACT gacatccatctatagtccagggtgttcgcctattgtttctatgttcccagGATTTGTAGCTATGGTAAATAAAGTCATGAGTGCCAAGTTTGAGTGGCTTGTCACCAGTACTGAACAGGTGCTGAGGGAGTTGCCACGACCTCTTGCCTTTGAGAAAGATAAATTCCTCACCCCTGACTTCACTTCAATAGATGTCCTGACCTTTGCTGGGTCAGGTATACCTGCAGGCATCAACATCCCTAATTgtaaaacttttccttcagtacaaatacagtccactcctgtctctaaaccc Alignment from Spaln_nt2Genome GCTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCGGGCATCAACATCCCCAACT gacatccatctatagtccagggtgttcgcctattgtttctatgttcccagGATTTGTAGCTATGGTAAATAAAGTCATGAGTGCCAAGTTTGAGTGGCTTGTCACCAGTACTGAACAGGTGCTGAGGGAGTTGCCACGACCTCTTGCCTTTGAGAAAGATAAATTCCTCACCCCTGACTTCACTTCAATAGATGTCCTGACCTTTGCTGGGTCAGGTATACCTGCAGGCATCAACATCCCTAATTgtaaaacttttccttcagtacaaatacagtccactcctgtctctaaaccc Alignment from Pairagon GCTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCGGGCATCAACATCCCCAACT gacatccatctatagtccagggtgttcgcctattgtttctatgttcccagGATTTGTAGCTATGGTAAATAAAGTCATGAGTGCCAAGTTTGAGTGGCTTGTCACCAGTACTGAACAGGTGCTGAGGGAGTTGCCACGACCTCTTGCCTTTGAGAAAGATAAATTCCTCACCCCTGACTTCACTTCAATAGATGTCCTGACCTTTGCTGGGTCAGGTATACCTGCAGGCATCAACATCCCTAATTgtaaaacttttccttcagtacaaatacagtccactcctgtctctaaaccc Alignment from Exonerate_protein2genome GCTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCGGGCATCAACATCCCCAACT gacatccatctatagtccagggtgttcgcctattgtttctatgttcccagGATTTGTAGCTATGGTAAATAAAGTCATGAGTGCCAAGTTTGAGTGGCTTGTCACCAGTACTGAACAGGTGCTGAGGGAGTTGCCACGACCTCTTGCCTTTGAGAAAGATAAATTCCTCACCCCTGACTTCACTTCAATAGATGTCCTGACCTTTGCTGGGTCAGGTATACCTGCAGGCATCAACATCCCTAATTgtaaaacttttccttcagtacaaatacagtccactcctgtctctaaaccc Alignment from Exonerate_coding2genome GCTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCGGGCATCAACATCCCCAACT gacatccatctatagtccagggtgttcgcctattgtttctatgttcccagGATTTGTAGCTATGGTAAATAAAGTCATGAGTGCCAAGTTTGAGTGGCTTGTCACCAGTACTGAACAGGTGCTGAGGGAGTTGCCACGACCTCTTGCCTTTGAGAAAGATAAATTCCTCACCCCTGACTTCACTTCAATAGATGTCCTGACCTTTGCTGGGTCAGGTATACCTGCAGGCATCAACATCCCTAATTgtaaaacttttccttcagtacaaatacagtccactcctgtctctaaaccc Alignment from GeneWise GCTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCGGGCATCAACATCCCCAACT gacatccatctatagtccagggtgttcgcctattgtttctatgttcccagGATTTGTAGCTATGGTAAATAAAGTCATGAGTGCCAAGTTTGAGTGGCTTGTCACCAGTACTGAACAGGTGCTGAGGGAGTTGCCACGACCTCTTGCCTTTGAGAAAGATAAATTCCTCACCCCTGACTTCACTTCAATAGATGTCCTGACCTTTGCTGGGTCAGGTATACCTGCAGGCATCAACATCCCTAATTgtaaaacttttccttcagtacaaatacagtccactcctgtctctaaaccc #### Dpp3_ID745_8 --> 1 - 1 Original Alignment tTACATTGGCTTCATTGAGAGCTACCGTGACCCCTTTGGCTCCCGAGGAGAGTTTGAAg ggtctgattgtatcaatgcattgtttgcgcttttctctgtcccggcttagtTACATTGGCTTCATTAAAAGCTACCGTGATCCCTTTGGCTCTCAAGGGGAGTTCAAAggtaacaactttgggaatggaggcttatataaccgtttttgctaaaaatgg Alignment from CESAR tTACATTGGCTTCATTGAGAGCTACCGTGACCCCTTTGGCTCCCGAGGAGAGTTTGAAg ggtctgattgtatcaatgcattgtttgcgcttttctctgtcccggcttagtTACATTGGCTTCATTAAAAGCTACCGTGATCCCTTTGGCTCTCAAGGGGAGTTCAAAggtaacaactttgggaatggaggcttatataaccgtttttgctaaaaatgg Alignment from Spaln_aa2Genome TTACATTGGCTTCATTGAGAGCTACCGTGACCCCTTTGGCTCCCGAGGAGAGTTTGAAG ggtctgattgtatcaatgcattgtttgcgcttttctctgtcccggcttagTTACATTGGCTTCATTAAAAGCTACCGTGATCCCTTTGGCTCTCAAGGGGAGTTCAAAGgtaacaactttgggaatggaggcttatataaccgtttttgctaaaaatgg Alignment from Spaln_nt2Genome TTACATTGGCTTCATTGAGAGCTACCGTGACCCCTTTGGCTCCCGAGGAGAGTTTGAAG ggtctgattgtatcaatgcattgtttgcgcttttctctgtcccggcttagTTACATTGGCTTCATTAAAAGCTACCGTGATCCCTTTGGCTCTCAAGGGGAGTTCAAAGgtaacaactttgggaatggaggcttatataaccgtttttgctaaaaatgg Alignment from Pairagon TTACATTGGCTTCATTGAGAGCTACCGTGACCCCTTTGGCTCCCGAGGAGAGTTTGAAG ggtctgattgtatcaatgcattgtttgcgcttttctctgtcccggcttagTTACATTGGCTTCATTAAAAGCTACCGTGATCCCTTTGGCTCTCAAGGGGAGTTCAAAGgtaacaactttgggaatggaggcttatataaccgtttttgctaaaaatgg Alignment from Exonerate_protein2genome TTACATTGGCTTCATTGAGAGCTACCGTGACCCCTTTGGCTCCCGAGGAGAGTTTGAAG ggtctgattgtatcaatgcattgtttgcgcttttctctgtcccggcttagTTACATTGGCTTCATTAAAAGCTACCGTGATCCCTTTGGCTCTCAAGGGGAGTTCAAAGgtaacaactttgggaatggaggcttatataaccgtttttgctaaaaatgg Alignment from Exonerate_coding2genome TTACATTGGCTTCATTGAGAGCTACCGTGACCCCTTTGGCTCCCGAGGAGAGTTTGAAG ggtctgattgtatcaatgcattgtttgcgcttttctctgtcccggcttagTTACATTGGCTTCATTAAAAGCTACCGTGATCCCTTTGGCTCTCAAGGGGAGTTCAAAGgtaacaactttgggaatggaggcttatataaccgtttttgctaaaaatgg Alignment from GeneWise TTACATTGGCTTCATTGAGAGCTACCGTGACCCCTTTGGCTCCCGAGGAGAGTTTGAA- ggtctgattgtatcaatgcattgtttgcgcttttctctgtcccggcttagTTACATTGGCTTCATTAAAAGCTACCGTGATCCCTTTGGCTCTCAAGGGGAGTTCAAAGgtaacaactttgggaatggaggcttatataaccgtttttgctaaaaatgg #### Dpp3_ID751_2 --> 0 - 0 Original Alignment GCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGCAACTACAAGTCCTTTGGTGACACCAAGTTTGTTCCTAACCTGCCCAAG ctgggggtaatacaattgtgaacacattttgtacttctctgtccctctagGCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGGAACTACAAGTCCTTTGGTGACACCCAGTTTGTGCCTAACCTGCCCAAAgtgaggtggcatgaatgaatgaggagaggagtccacttggactcaaagga Alignment from CESAR GCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGCAACTACAAGTCCTTTGGTGACACCAAGTTTGTTCCTAACCTGCCCAAG ctgggggtaatacaattgtgaacacattttgtacttctctgtccctctagGCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGGAACTACAAGTCCTTTGGTGACACCCAGTTTGTGCCTAACCTGCCCAAAgtgaggtggcatgaatgaatgaggagaggagtccacttggactcaaagga Alignment from Spaln_aa2Genome GCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGCAACTACAAGTCCTTTGGTGACACCAAGTTTGTTCCTAACCTGCCCAAG ctgggggtaatacaattgtgaacacattttgtacttctctgtccctctagGCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGGAACTACAAGTCCTTTGGTGACACCCAGTTTGTGCCTAACCTGCCCAAAgtgaggtggcatgaatgaatgaggagaggagtccacttggactcaaagga Alignment from Spaln_nt2Genome GCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGCAACTACAAGTCCTTTGGTGACACCAAGTTTGTTCCTAACCTGCCCAAG ctgggggtaatacaattgtgaacacattttgtacttctctgtccctctagGCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGGAACTACAAGTCCTTTGGTGACACCCAGTTTGTGCCTAACCTGCCCAAAgtgaggtggcatgaatgaatgaggagaggagtccacttggactcaaagga Alignment from Pairagon GCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGCAACTACAAGTCCTTTGGTGACACCAAGTTTGTTCCTAACCTGCCCAAG ctgggggtaatacaattgtgaacacattttgtacttctctgtccctctagGCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGGAACTACAAGTCCTTTGGTGACACCCAGTTTGTGCCTAACCTGCCCAAAgtgaggtggcatgaatgaatgaggagaggagtccacttggactcaaagga Alignment from Exonerate_protein2genome GCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGCAACTACAAGTCCTTTGGTGACACCAAGTTTGTTCCTAACCTGCCCAAG ctgggggtaatacaattgtgaacacattttgtacttctctgtccctctagGCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGGAACTACAAGTCCTTTGGTGACACCCAGTTTGTGCCTAACCTGCCCAAAgtgaggtggcatgaatgaatgaggagaggagtccacttggactcaaagga Alignment from Exonerate_coding2genome ctgggggtaatacaattgtgaacacattttgtacttctctgtccctctaggcattcctggtctacgctgcaggggtctactccaacatggggaactacaagtcctttggtgacacccagtttgtgcctaacctgcccaaagtgaggtggcatgaatgaatgaggagaggagtccacttggactcaaagga Alignment from GeneWise GCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGCAACTACAAGTCCTTTGGTGACACCAAGTTTGTTCCTAACCTGCCCAAG ctgggggtaatacaattgtgaacacattttgtacttctctgtccctctagGCATTCCTGGTCTACGCTGCAGGGGTCTACTCCAACATGGGGAACTACAAGTCCTTTGGTGACACCCAGTTTGTGCCTAACCTGCCCAAAgtgaggtggcatgaatgaatgaggagaggagtccacttggactcaaagga #### Drap1_ID984_6 --> 0 - 2 Original Alignment GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGag tggatgactgggataatgtcccaaaatctctctgctatcttctttcttagGATAAGTCTGAGGATATGGATACTGATGGAGAGGAGGAGACACCCCAGCTTCCACCTCAGGCCAGCCACCCTCCTGCCCATTATCAGaggtaacatttacataggtagtgtaacactttttttatcctgacactggctt Alignment from CESAR GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGag tggatgactgggataatgtcccaaaatctctctgctatcttctttcttagGATAAGTCTGAGGATATGGATACTGATGGAGAGGAGGAGACACCCCAGCTTCCACCTCAGGCCAGCCACCCTCCTGCCCATTATCAGaggtaacatttacataggtagtgtaacactttttttatcctgacactggctt Alignment from Spaln_aa2Genome GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG tggatgactgggataatgtcccaaaatctctctgctatcttctttcttagGATAAGTCTGAGGATATGGATACTGATGGAGAGGAGGAGACACCCCAGCTTCCACCTCAGGCCAGCCACCCTCCTGCCCATTATCAGAGgtaacatttacataggtagtgtaacactttttttatcctgacactggctt Alignment from Spaln_nt2Genome GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG tggatgactgggataatgtcccaaaatctctctgctatcttctttcttagGATAAGTCTGAGGATATGGATACTGATGGAGAGGAGGAGACACCCCAGCTTCCACCTCAGGCCAGCCACCCTCCTGCCCATTATCAGAGgtaacatttacataggtagtgtaacactttttttatcctgacactggctt Alignment from Pairagon GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG tggatgactgggataatgtcccaaaatctctctgctatcttctttcttagGATAAGTCTGAGGATATGGATACTGATGGAGAGGAGGAGACACCCCAGCTTCCACCTCAGGCCAGCCACCCTCCTGCCCATTATCAGAGgtaacatttacataggtagtgtaacactttttttatcctgacactggctt Alignment from Exonerate_protein2genome GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG tggatgactgggataatgtcccaaaatctctctgctatcttctttcttagGATAAGTCTGAGGATATGGATACTGATGGAGAGGAGGAGACACCCCAGCTTCCACCTCAGGCCAGCCACCCTCCTGCCCATTATCAGAGgtaacatttacataggtagtgtaacactttttttatcctgacactggctt Alignment from Exonerate_coding2genome AGGATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG tggatgactgggataatgtcccaaaatctctctgctatcttctttcttAGGATAAGTCTGAGGATATGGATACTGATGGAGAGGAGGAGACACCCCAGCTTCCACCTCAGGCCAGCCACCCTCCTGCCCATTATCAGAGgtaacatttacataggtagtgtaacactttttttatcctgacactggctt Alignment from GeneWise GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG tggatgactgggataatgtcccaaaatctctctgctatcttctttcttagGATAAGTCTGAGGATATGGATACTGATGGAGAGGAGGAGACACCCCAGCTTCCACCTCAGGCCAGCCACCCTCCTGCCCATTATCAGAGgtaacatttacataggtagtgtaacactttttttatcctgacactggctt #### Drap1_ID986_4 --> 1 - 2 Original Alignment gAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAag gGGCCGGA tccccaagtggttgagaggcagtcaaccacagctacgttttcttttctagaATGCAATGCATTGATGTTGAGCAGCAATTTGACTTCTTGAAAGCACTAGTGGCATCAGTACCTGACATGCAGGGGGACAGGGAAGACAACCATGTAGATGGGGAAAAGGGACCTCGAaggtaaggagccaggggcctgctggttttgcttctcaaatgcaggGGCTGTA Alignment from CESAR gAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAag gGGCCGGA tccccaagtggttgagaggcagtcaaccacagctacgttttcttttctagaATGCAATGCATTGATGTTGAGCAGCAATTTGACTTCTTGAAAGCACTAGTGGCATCAGTACCTGACATGCAGGGGGACAGGGAAGACAACCATGTAGATGGGGAAAAGGGACCTCGAaggtaaggagccaggggcctgcatgtctcccctctttgctgtaggGGCTGTA Alignment from Spaln_aa2Genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tccccaagtggttgagaggcagtcaaccacagctacgttttcttttctagAATGCAATGCATTGATGTTGAGCAGCAATTTGACTTCTTGAAAGCACTAGTGGCATCAGTACCTGACATGCAGGGGGACAGGGAAGACAACCATGTAGATGGGGAAAAGGGACCTCGAAGgtaaggagccaggggcctgctggttttgcttctcaaatgcagGGGCTGTA Alignment from Spaln_nt2Genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tccccaagtggttgagaggcagtcaaccacagctacgttttcttttctagAATGCAATGCATTGATGTTGAGCAGCAATTTGACTTCTTGAAAGCACTAGTGGCATCAGTACCTGACATGCAGGGGGACAGGGAAGACAACCATGTAGATGGGGAAAAGGGACCTCGAAGgtaaggagccaggggcctgctggttttgcttctcaaatgcagGGGCTGTA Alignment from Pairagon GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tccccaagtggttgagaggcagtcaaccacagctacgttttcttttctagAATGCAATGCATTGATGTTGAGCAGCAATTTGACTTCTTGAAAGCACTAGTGGCATCAGTACCTGACATGCAGGGGGACAGGGAAGACAACCATGTAGATGGGGAAAAGGGACCTCGAAGgtaaggagccaggggcctgctggttttgcttctcaaatgcagGGGCTGTA Alignment from Exonerate_protein2genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tccccaagtggttgagaggcagtcaaccacagctacgttttcttttctagAATGCAATGCATTGATGTTGAGCAGCAATTTGACTTCTTGAAAGCACTAGTGGCATCAGTACCTGACATGCAGGGGGACAGGGAAGACAACCATGTAGATGGGGAAAAGGGACCTCGAAGgtaaggagccaggggcctgctggttttgcttctcaaatgcagGGGCTGTA Alignment from Exonerate_coding2genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAGGGGCCGGAAACCGGGCAGCAGCGGC------AGGAAGAACGGAGGCACGG tccccaagtggttgagaggcagtcaaccacagctacgttttcttttctagAATGCAATGCATTGATGTTGAGCAGCAATTTGACTTCTTGAAAGCACTAGTGGCATCAGTACCTGACATGCAGGGGGACAGGGAAGACAACCATGTAGATGGGGAAAAGGGACCTCGAAGGTAAGGAGCCAGGGGCCTGCTGGTTTTGCTTCTCAAATGCAGGGGCTGTA Alignment from GeneWise GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tccccaagtggttgagaggcagtcaaccacagctacgttttcttttctagAATGCAATGCATTGATGTTGAGCAGCAATTTGACTTCTTGAAAGCACTAGTGGCATCAGTACCTGACATGCAGGGGGACAGGGAAGACAACCATGTAGATGGGGAAAAGGGACCTCGAAGgtaaggagccaggggcctgctggttttgcttctcaaatgcagGGGCTGTA #### Dusp5_ID11300_2 --> 2 - 0 Original Alignment ggGGGTATGAGACCTTCTACTCACAGTATCCTGAGTGCTGTGTGGATGTGAAGCCCACCTCACAAGAGAAGATCGAAGGCGAGAGAAGCCTCCTCAGCCAGTGTGGAAAGCCCGTTCTCAGCGTCGCCTACAGACCAGCCTATGACCAG tctgcggaccacatacacaccttgtaattttccttatgctactcttttaggaGGTTATGAGACTTACTATTCACAGTACCCCAAGTGCTGTGTGGGTGTAAAGCCTACCTCACAAGAAAAGATAGAAGGAAAGAGAAGTCTCCTCAGCCAGTGTGGAAAGCCAGTTCTTAGTGTTGCCTACAGGCCAGCCTATGATCAGgtatcaactagacaggccttatagtttgtcaatgatgcttgccaacaggg Alignment from CESAR ggGGGTATGAGACCTTCTACTCACAGTATCCTGAGTGCTGTGTGGATGTGAAGCCCACCTCACAAGAGAAGATCGAAGGCGAGAGAAGCCTCCTCAGCCAGTGTGGAAAGCCCGTTCTCAGCGTCGCCTACAGACCAGCCTATGACCAG tctgcggaccacatacacaccttgtaattttccttatgctactcttttaggaGGTTATGAGACTTACTATTCACAGTACCCCAAGTGCTGTGTGGGTGTAAAGCCTACCTCACAAGAAAAGATAGAAGGAAAGAGAAGTCTCCTCAGCCAGTGTGGAAAGCCAGTTCTTAGTGTTGCCTACAGGCCAGCCTATGATCAGgtatcaactagacaggccttatagtttgtcaatgatgcttgccaacaggg Alignment from Spaln_aa2Genome GGGGGTATGAGACCTTCTACTCACAGTATCCTGAGTGCTGTGTGGATGTGAAGCCCACCTCACAAGAGAAGATCGAAGGCGAGAGAAGCCTCCTCAGCCAGTGTGGAAAGCCCGTTCTCAGCGTCGCCTACAGACCAGCCTATGACCAG tctgcggaccacatacacaccttgtaattttccttatgctactcttttagGAGGTTATGAGACTTACTATTCACAGTACCCCAAGTGCTGTGTGGGTGTAAAGCCTACCTCACAAGAAAAGATAGAAGGAAAGAGAAGTCTCCTCAGCCAGTGTGGAAAGCCAGTTCTTAGTGTTGCCTACAGGCCAGCCTATGATCAGgtatcaactagacaggccttatagtttgtcaatgatgcttgccaacaggg Alignment from Spaln_nt2Genome GGGGGTATGAGACCTTCTACTCACAGTATCCTGAGTGCTGTGTGGATGTGAAGCCCACCTCACAAGAGAAGATCGAAGGCGAGAGAAGCCTCCTCAGCCAGTGTGGAAAGCCCGTTCTCAGCGTCGCCTACAGACCAGCCTATGACCAG tctgcggaccacatacacaccttgtaattttccttatgctactcttttagGAGGTTATGAGACTTACTATTCACAGTACCCCAAGTGCTGTGTGGGTGTAAAGCCTACCTCACAAGAAAAGATAGAAGGAAAGAGAAGTCTCCTCAGCCAGTGTGGAAAGCCAGTTCTTAGTGTTGCCTACAGGCCAGCCTATGATCAGgtatcaactagacaggccttatagtttgtcaatgatgcttgccaacaggg Alignment from Pairagon GGGGGTATGAGACCTTCTACTCACAGTATCCTGAGTGCTGTGTGGATGTGAAGCCCACCTCACAAGAGAAGATCGAAGGCGAGAGAAGCCTCCTCAGCCAGTGTGGAAAGCCCGTTCTCAGCGTCGCCTACAGACCAGCCTATGACCAG tctgcggaccacatacacaccttgtaattttccttatgctactcttttagGAGGTTATGAGACTTACTATTCACAGTACCCCAAGTGCTGTGTGGGTGTAAAGCCTACCTCACAAGAAAAGATAGAAGGAAAGAGAAGTCTCCTCAGCCAGTGTGGAAAGCCAGTTCTTAGTGTTGCCTACAGGCCAGCCTATGATCAGgtatcaactagacaggccttatagtttgtcaatgatgcttgccaacaggg Alignment from Exonerate_protein2genome GGGGGTATGAGACCTTCTACTCACAGTATCCTGAGTGCTGTGTGGATGTGAAGCCCACCTCACAAGAGAAGATCGAAGGCGAGAGAAGCCTCCTCAGCCAGTGTGGAAAGCCCGTTCTCAGCGTCGCCTACAGACCAGCCTATGACCAG tctgcggaccacatacacaccttgtaattttccttatgctactcttttagGAGGTTATGAGACTTACTATTCACAGTACCCCAAGTGCTGTGTGGGTGTAAAGCCTACCTCACAAGAAAAGATAGAAGGAAAGAGAAGTCTCCTCAGCCAGTGTGGAAAGCCAGTTCTTAGTGTTGCCTACAGGCCAGCCTATGATCAGgtatcaactagacaggccttatagtttgtcaatgatgcttgccaacaggg Alignment from Exonerate_coding2genome CTTAAAGGGGGGTATGAGACCTTCTACTCACAGTATCCTGAGTGCTGTGTGGATGTGAAGCCCACCTCACAAGAGAAGATCGAAGGCGAGAGAAGCCTCCTCAGCCAGTGTGGAAAGCCCGTTCTCAGCGTCGCCTACAGACCAGCCTATGACCAG tctgcggaccacatacacaccttgtaattttccttatgctactCTTTTAGGAGGTTATGAGACTTACTATTCACAGTACCCCAAGTGCTGTGTGGGTGTAAAGCCTACCTCACAAGAAAAGATAGAAGGAAAGAGAAGTCTCCTCAGCCAGTGTGGAAAGCCAGTTCTTAGTGTTGCCTACAGGCCAGCCTATGATCAGgtatcaactagacaggccttatagtttgtcaatgatgcttgccaacaggg Alignment from GeneWise GGGGGTATGAGACCTTCTACTCACAGTATCCTGAGTGCTGTGTGGATGTGAAGCCCACCTCACAAGAGAAGATCGAAGGCGAGAGAAGCCTCCTCAGCCAGTGTGGAAAGCCCGTTCTCAGCGTCGCCTACAGACCAGCCTATGACCAG tctgcggaccacatacacaccttgtaattttccttatgctactcttttagGAGGTTATGAGACTTACTATTCACAGTACCCCAAGTGCTGTGTGGGTGTAAAGCCTACCTCACAAGAAAAGATAGAAGGAAAGAGAAGTCTCCTCAGCCAGTGTGGAAAGCCAGTTCTTAGTGTTGCCTACAGGCCAGCCTATGATCAGgtatcaactagacaggccttatagtttgtcaatgatgcttgccaacaggg #### Eef1g_ID2561_3 --> 0 - 1 Original Alignment GTTCCAGCATTTGAGGGTGATGATGGATTCTGTGTGTTTGAGAGCAATGCCATTGCCTATTATg tactaagaaactgcagtgcatatatcatcttacagatgttctctgggcagGTCCCAGCATTTGAAGGTGATGATGGATTCTGTGTGTTTGAGAGCAATGCAATTGCCTATTATggtcagttttaggataggagataggggagtgctcacttaagcagctatggt Alignment from CESAR GTTCCAGCATTTGAGGGTGATGATGGATTCTGTGTGTTTGAGAGCAATGCCATTGCCTATTATg tactaagaaactgcagtgcatatatcatcttacagatgttctctgggcagGTCCCAGCATTTGAAGGTGATGATGGATTCTGTGTGTTTGAGAGCAATGCAATTGCCTATTATggtcagttttaggataggagataggggagtgctcacttaagcagctatggt Alignment from Spaln_aa2Genome GTTCCAGCATTTGAGGGTGATGATGGATTCTGTGTGTTTGAGAGCAATGCCATTGCCTATTATG tactaagaaactgcagtgcatatatcatcttacagatgttctctgggcagGTCCCAGCATTTGAAGGTGATGATGGATTCTGTGTGTTTGAGAGCAATGCAATTGCCTATTATGgtcagttttaggataggagataggggagtgctcacttaagcagctatggt Alignment from Spaln_nt2Genome GTTCCAGCATTTGAGGGTGATGATGGATTCTGTGTGTTTGAGAGCAATGCCATTGCCTATTATG tactaagaaactgcagtgcatatatcatcttacagatgttctctgggcagGTCCCAGCATTTGAAGGTGATGATGGATTCTGTGTGTTTGAGAGCAATGCAATTGCCTATTATGgtcagttttaggataggagataggggagtgctcacttaagcagctatggt Alignment from Pairagon GTTCCAGCATTTGAGGGTGATGATGGATTCTGTGTGTTTGAGAGCAATGCCATTGCCTATTATG tactaagaaactgcagtgcatatatcatcttacagatgttctctgggcagGTCCCAGCATTTGAAGGTGATGATGGATTCTGTGTGTTTGAGAGCAATGCAATTGCCTATTATGgtcagttttaggataggagataggggagtgctcacttaagcagctatggt Alignment from Exonerate_protein2genome GTTCCAGCATTTGAGGGTGATGATGGATTCTGTGTGTTTGAGAGCAATGCCATTGCCTATTATG tactaagaaactgcagtgcatatatcatcttacagatgttctctgggcagGTCCCAGCATTTGAAGGTGATGATGGATTCTGTGTGTTTGAGAGCAATGCAATTGCCTATTATGgtcagttttaggataggagataggggagtgctcacttaagcagctatggt Alignment from Exonerate_coding2genome GTTCCAGCATTTGAGGGTGATGATGGATTCTGTGTGTTTGAGAGCAATGCCATTGCCTATTATG tactaagaaactgcagtgcatatatcatcttacagatgttctctgggcagGTCCCAGCATTTGAAGGTGATGATGGATTCTGTGTGTTTGAGAGCAATGCAATTGCCTATTATGgtcagttttaggataggagataggggagtgctcacttaagcagctatggt Alignment from GeneWise GTTCCAGCATTTGAGGGTGATGATGGATTCTGTGTGTTTGAGAGCAATGCCATTGCCTATTATG tactaagaaactgcagtgcatatatcatcttacagatgttctctgggcagGTCCCAGCATTTGAAGGTGATGATGGATTCTGTGTGTTTGAGAGCAATGCAATTGCCTATTATGgtcagttttaggataggagataggggagtgctcacttaagcagctatggt #### Eef1g_ID2564_6 --> 0 - 1 Original Alignment GTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGCATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATg tgtaccatgtggttttgcgggtcctagaccggggtgtcttttgtgatcagGTCTTAGACCCTTCCTTTTGCCAGGCCTTCCCCAATGCCAACCGGTGGTTCCTGGCTTGTATCAACCAGCCCCAGTTTAGGGCTATCTTGGGAGAGGTGAAGCTGTGTGAGAAAATGGCTCAGTTTGATggtacaatagaaagactatatgcataagtggttaattctagctagggttaa Alignment from CESAR GTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGCATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATg tgtaccatgtggttttgcgggtcctagaccggggtgtcttttgtgatcagGTCTTAGACCCTTCCTTTTGCCAGGCCTTCCCCAATGCCAACCGGTGGTTCCTGGCTTGTATCAACCAGCCCCAGTTTAGGGCTATCTTGGGAGAGGTGAAGCTGTGTGAGAAAATGGCTCAGTTTGATggtacaatagaaagactatatgcataagtggttaattctagctagggttaa Alignment from Spaln_aa2Genome GTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGCATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATG tgtaccatgtggttttgcgggtcctagaccggggtgtcttttgtgatcagGTCTTAGACCCTTCCTTTTGCCAGGCCTTCCCCAATGCCAACCGGTGGTTCCTGGCTTGTATCAACCAGCCCCAGTTTAGGGCTATCTTGGGAGAGGTGAAGCTGTGTGAGAAAATGGCTCAGTTTGATGgtacaatagaaagactatatgcataagtggttaattctagctagggttaa Alignment from Spaln_nt2Genome GTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGCATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATG tgtaccatgtggttttgcgggtcctagaccggggtgtcttttgtgatcagGTCTTAGACCCTTCCTTTTGCCAGGCCTTCCCCAATGCCAACCGGTGGTTCCTGGCTTGTATCAACCAGCCCCAGTTTAGGGCTATCTTGGGAGAGGTGAAGCTGTGTGAGAAAATGGCTCAGTTTGATGgtacaatagaaagactatatgcataagtggttaattctagctagggttaa Alignment from Pairagon GTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGCATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATG tgtaccatgtggttttgcgggtcctagaccggggtgtcttttgtgatcagGTCTTAGACCCTTCCTTTTGCCAGGCCTTCCCCAATGCCAACCGGTGGTTCCTGGCTTGTATCAACCAGCCCCAGTTTAGGGCTATCTTGGGAGAGGTGAAGCTGTGTGAGAAAATGGCTCAGTTTGATGgtacaatagaaagactatatgcataagtggttaattctagctagggttaa Alignment from Exonerate_protein2genome GTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGCATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATG tgtaccatgtggttttgcgggtcctagaccggggtgtcttttgtgatcagGTCTTAGACCCTTCCTTTTGCCAGGCCTTCCCCAATGCCAACCGGTGGTTCCTGGCTTGTATCAACCAGCCCCAGTTTAGGGCTATCTTGGGAGAGGTGAAGCTGTGTGAGAAAATGGCTCAGTTTGATGgtacaatagaaagactatatgcataagtggttaattctagctagggttaa Alignment from Exonerate_coding2genome GTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGCATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATG tgtaccatgtggttttgcgggtcctagaccggggtgtcttttgtgatcagGTCTTAGACCCTTCCTTTTGCCAGGCCTTCCCCAATGCCAACCGGTGGTTCCTGGCTTGTATCAACCAGCCCCAGTTTAGGGCTATCTTGGGAGAGGTGAAGCTGTGTGAGAAAATGGCTCAGTTTGATGgtacaatagaaagactatatgcataagtggttaattctagctagggttaa Alignment from GeneWise GTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGCATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATG tgtaccatgtggttttgcgggtcctagaccggggtgtcttttgtgatcagGTCTTAGACCCTTCCTTTTGCCAGGCCTTCCCCAATGCCAACCGGTGGTTCCTGGCTTGTATCAACCAGCCCCAGTTTAGGGCTATCTTGGGAGAGGTGAAGCTGTGTGAGAAAATGGCTCAGTTTGATGgtacaatagaaagactatatgcataagtggttaattctagctagggttaa #### Eef1g_ID2565_7 --> 2 - 2 Original Alignment ctAAGAAGTTTGCAGAGAGCCAGCCTAAAAAAGATACCCCAAGGAAAGAAAAGGGTTCACGAGAGGAGAAACAGAAACCCCAGGCTGAGCGGAAGGAGGAAAAAAAGGCAGCTGCCCCAGCTCCTGAGGAAGAGATGGATGAGTGTGAGCAGGCATTGGCTGCTGAGCCCAAGGCCAAGGACCCTTTCGCTCACCTGCCCAAGag aaaagcaagaaggaagtgactgtgtattaacctatttttatctatcctagccAAGAAATTTGCAGAGAGCCAGCCCAAAAAGGATACCCCAAGGAAAGAACAGGGATCACGAGAGGAGAAGCAGAAACCCCAGGCTGAACGGAAGGAGGAAAGAAAGGCAGCTGCTCCAGCACCTGAGGAAGAGATGGATGAGTGTGAGCAGGCTTTGGCCACTGAGCCCAAGGCCAAGGATCCTTTTGCTCACCTGCCAAAGaggtaggtttatgctctatttatatcttgggtgagtagcgtaggttgatgta Alignment from CESAR ctAAGAAGTTTGCAGAGAGCCAGCCTAAAAAAGATACCCCAAGGAAAGAAAAGGGTTCACGAGAGGAGAAACAGAAACCCCAGGCTGAGCGGAAGGAGGAAAAAAAGGCAGCTGCCCCAGCTCCTGAGGAAGAGATGGATGAGTGTGAGCAGGCATTGGCTGCTGAGCCCAAGGCCAAGGACCCTTTCGCTCACCTGCCCAAGag aaaagcaagaaggaagtgactgtgtattaacctatttttatctatcctagccAAGAAATTTGCAGAGAGCCAGCCCAAAAAGGATACCCCAAGGAAAGAACAGGGATCACGAGAGGAGAAGCAGAAACCCCAGGCTGAACGGAAGGAGGAAAGAAAGGCAGCTGCTCCAGCACCTGAGGAAGAGATGGATGAGTGTGAGCAGGCTTTGGCCACTGAGCCCAAGGCCAAGGATCCTTTTGCTCACCTGCCAAAGaggtaggtttatgctctatttatatcttgggtgagtagcgtaggttgatgta Alignment from Spaln_aa2Genome CTAAGAAGTTTGCAGAGAGCCAGCCTAAAAAAGATACCCCAAGGAAAGAAAAGGGTTCACGAGAGGAGAAACAGAAACCCCAGGCTGAGCGGAAGGAGGAAAAAAAGGCAGCTGCCCCAGCTCCTGAGGAAGAGATGGATGAGTGTGAGCAGGCATTGGCTGCTGAGCCCAAGGCCAAGGACCCTTTCGCTCACCTGCCCAAGAG aaaagcaagaaggaagtgactgtgtattaacctatttttatctatcctagCCAAGAAATTTGCAGAGAGCCAGCCCAAAAAGGATACCCCAAGGAAAGAACAGGGATCACGAGAGGAGAAGCAGAAACCCCAGGCTGAACGGAAGGAGGAAAGAAAGGCAGCTGCTCCAGCACCTGAGGAAGAGATGGATGAGTGTGAGCAGGCTTTGGCCACTGAGCCCAAGGCCAAGGATCCTTTTGCTCACCTGCCAAAGAGgtaggtttatgctctatttatatcttgggtgagtagcgtaggttgatgta Alignment from Spaln_nt2Genome CTAAGAAGTTTGCAGAGAGCCAGCCTAAAAAAGATACCCCAAGGAAAGAAAAGGGTTCACGAGAGGAGAAACAGAAACCCCAGGCTGAGCGGAAGGAGGAAAAAAAGGCAGCTGCCCCAGCTCCTGAGGAAGAGATGGATGAGTGTGAGCAGGCATTGGCTGCTGAGCCCAAGGCCAAGGACCCTTTCGCTCACCTGCCCAAGAG aaaagcaagaaggaagtgactgtgtattaacctatttttatctatcctagCCAAGAAATTTGCAGAGAGCCAGCCCAAAAAGGATACCCCAAGGAAAGAACAGGGATCACGAGAGGAGAAGCAGAAACCCCAGGCTGAACGGAAGGAGGAAAGAAAGGCAGCTGCTCCAGCACCTGAGGAAGAGATGGATGAGTGTGAGCAGGCTTTGGCCACTGAGCCCAAGGCCAAGGATCCTTTTGCTCACCTGCCAAAGAGgtaggtttatgctctatttatatcttgggtgagtagcgtaggttgatgta Alignment from Pairagon CTAAGAAGTTTGCAGAGAGCCAGCCTAAAAAAGATACCCCAAGGAAAGAAAAGGGTTCACGAGAGGAGAAACAGAAACCCCAGGCTGAGCGGAAGGAGGAAAAAAAGGCAGCTGCCCCAGCTCCTGAGGAAGAGATGGATGAGTGTGAGCAGGCATTGGCTGCTGAGCCCAAGGCCAAGGACCCTTTCGCTCACCTGCCCAAGAG aaaagcaagaaggaagtgactgtgtattaacctatttttatctatcctagCCAAGAAATTTGCAGAGAGCCAGCCCAAAAAGGATACCCCAAGGAAAGAACAGGGATCACGAGAGGAGAAGCAGAAACCCCAGGCTGAACGGAAGGAGGAAAGAAAGGCAGCTGCTCCAGCACCTGAGGAAGAGATGGATGAGTGTGAGCAGGCTTTGGCCACTGAGCCCAAGGCCAAGGATCCTTTTGCTCACCTGCCAAAGAGgtaggtttatgctctatttatatcttgggtgagtagcgtaggttgatgta Alignment from Exonerate_protein2genome CTAAGAAGTTTGCAGAGAGCCAGCCTAAAAAAGATACCCCAAGGAAAGAAAAGGGTTCACGAGAGGAGAAACAGAAACCCCAGGCTGAGCGGAAGGAGGAAAAAAAGGCAGCTGCCCCAGCTCCTGAGGAAGAGATGGATGAGTGTGAGCAGGCATTGGCTGCTGAGCCCAAGGCCAAGGACCCTTTCGCTCACCTGCCCAAGAG aaaagcaagaaggaagtgactgtgtattaacctatttttatctatcctagCCAAGAAATTTGCAGAGAGCCAGCCCAAAAAGGATACCCCAAGGAAAGAACAGGGATCACGAGAGGAGAAGCAGAAACCCCAGGCTGAACGGAAGGAGGAAAGAAAGGCAGCTGCTCCAGCACCTGAGGAAGAGATGGATGAGTGTGAGCAGGCTTTGGCCACTGAGCCCAAGGCCAAGGATCCTTTTGCTCACCTGCCAAAGAGgtaggtttatgctctatttatatcttgggtgagtagcgtaggttgatgta Alignment from Exonerate_coding2genome CTAAGAAGTTTGCAGAGAGCCAGCCTAAAAAAGATACCCCAAGGAAAGAAAAGGGTTCACGAGAGGAGAAACAGAAACCCCAGGCTGAGCGGAAGGAGGAAAAAAAGGCAGCTGCCCCAGCTCCTGAGGAAGAGATGGATGAGTGTGAGCAGGCATTGGCTGCTGAGCCCAAGGCCAAGGACCCTTTCGCTCACCTGCCCAAGAG aaaagcaagaaggaagtgactgtgtattaacctatttttatctatcctagCCAAGAAATTTGCAGAGAGCCAGCCCAAAAAGGATACCCCAAGGAAAGAACAGGGATCACGAGAGGAGAAGCAGAAACCCCAGGCTGAACGGAAGGAGGAAAGAAAGGCAGCTGCTCCAGCACCTGAGGAAGAGATGGATGAGTGTGAGCAGGCTTTGGCCACTGAGCCCAAGGCCAAGGATCCTTTTGCTCACCTGCCAAAGAGgtaggtttatgctctatttatatcttgggtgagtagcgtaggttgatgta Alignment from GeneWise CTAAGAAGTTTGCAGAGAGCCAGCCTAAAAAAGATACCCCAAGGAAAGAAAAGGGTTCACGAGAGGAGAAACAGAAACCCCAGGCTGAGCGGAAGGAGGAAAAAAAGGCAGCTGCCCCAGCTCCTGAGGAAGAGATGGATGAGTGTGAGCAGGCATTGGCTGCTGAGCCCAAGGCCAAGGACCCTTTCGCTCACCTGCCCAAGAG aaaagcaagaaggaagtgactgtgtattaacctatttttatctatcctagCCAAGAAATTTGCAGAGAGCCAGCCCAAAAAGGATACCCCAAGGAAAGAACAGGGATCACGAGAGGAGAAGCAGAAACCCCAGGCTGAACGGAAGGAGGAAAGAAAGGCAGCTGCTCCAGCACCTGAGGAAGAGATGGATGAGTGTGAGCAGGCTTTGGCCACTGAGCCCAAGGCCAAGGATCCTTTTGCTCACCTGCCAAAGAGgtaggtttatgctctatttatatcttgggtgagtagcgtaggttgatgta #### Eef1g_ID2566_8 --> 1 - 1 Original Alignment tACCTTTGTGTTGGAT---GAGTTTAAGCGTAAGTACTCCAATGAGGACACCCTCTCTGTGGCACTGCCATATTTTTGGGAGCACTTTGATAAAGATGGCTGGTCCCTGTGGTATGCCGAGTACCGCTTCCCTGAAGAGCTGACCCAGACCTTCATGAGTTGCAACCTCATCACTg cagtcccactgatgctcccatgtatagcgacactaatttttgttactcaggACCTTTGTGTTAGATGATGAGTTTAAGCATAAGTATTCCAATGAGGACACACTTTCTGTGGCACTACCGTACTTTTGGGAGTACTATGAC---AATGGCTGGTCGCTCTGGTATGCTGAGTATTGCTTTCCTAAGGAGCTCACCCAGACCTTCATGAGTTGCACCCTGATCACTggtacgtaggggagttggtatgggaataaggataaacaaagccaggagggt Alignment from CESAR tACCTTTGTGTTGGAT---GAGTTTAAGCGTAAGTACTCCAATGAGGACACCCTCTCTGTGGCACTGCCATATTTTTGGGAGCACTTTGATAAAGATGGCTGGTCCCTGTGGTATGCCGAGTACCGCTTCCCTGAAGAGCTGACCCAGACCTTCATGAGTTGCAACCTCATCACTg cagtcccactgatgctcccatgtatagcgacactaatttttgttactcaggACCTTTGTGTTAGATGATGAGTTTAAGCATAAGTATTCCAATGAGGACACACTTTCTGTGGCACTACCGTACTTTTGGGAGTACTATGAC---AATGGCTGGTCGCTCTGGTATGCTGAGTATTGCTTTCCTAAGGAGCTCACCCAGACCTTCATGAGTTGCACCCTGATCACTggtacgtaggggagttggtatgggaataaggataaacaaagccaggagggt Alignment from Spaln_aa2Genome TACCTTTGTGTTG---GATGAGTTTAAGCGTAAGTACTCCAATGAGGACACCCTCTCTGTGGCACTGCCATATTTTTGGGAGCACTTTGATAAAGATGGCTGGTCCCTGTGGTATGCCGAGTACCGCTTCCCTGAAGAGCTGACCCAGACCTTCATGAGTTGCAACCTCATCACTG cagtcccactgatgctcccatgtatagcgacactaatttttgttactcagGACCTTTGTGTTAGATGATGAGTTTAAGCATAAGTATTCCAATGAGGACACACTTTCTGTGGCACTACCGTACTTTTGGGAGTACTATGAC---AATGGCTGGTCGCTCTGGTATGCTGAGTATTGCTTTCCTAAGGAGCTCACCCAGACCTTCATGAGTTGCACCCTGATCACTGgtacgtaggggagttggtatgggaataaggataaacaaagccaggagggt Alignment from Spaln_nt2Genome TACCTTTGTGTTGGATGA---GTTTAAGCGTAAGTACTCCAATGAGGACACCCTCTCTGTGGCACTGCCATATTTTTGGGAGCACTTTGATAAAGATGGCTGGTCCCTGTGGTATGCCGAGTACCGCTTCCCTGAAGAGCTGACCCAGACCTTCATGAGTTGCAACCTCATCACTG cagtcccactgatgctcccatgtatagcgacactaatttttgttactcagGACCTTTGTGTTAGATGATGAGTTTAAGCATAAGTATTCCAATGAGGACACACTTTCTGTGGCACTACCGTACTTTTGGGAGTACTATGACA---ATGGCTGGTCGCTCTGGTATGCTGAGTATTGCTTTCCTAAGGAGCTCACCCAGACCTTCATGAGTTGCACCCTGATCACTGgtacgtaggggagttggtatgggaataaggataaacaaagccaggagggt Alignment from Pairagon TACCTTTGTGTTG---GATGAGTTTAAGCGTAAGTACTCCAATGAGGACACCCTCTCTGTGGCACTGCCATATTTTTGGGAGCACTTTGATAAAGATGGCTGGTCCCTGTGGTATGCCGAGTACCGCTTCCCTGAAGAGCTGACCCAGACCTTCATGAGTTGCAACCTCATCACTG cagtcccactgatgctcccatgtatagcgacactaatttttgttactcagGACCTTTGTGTTAGATGATGAGTTTAAGCATAAGTATTCCAATGAGGACACACTTTCTGTGGCACTACCGTACTTTTGGGAGTACTATGACA---ATGGCTGGTCGCTCTGGTATGCTGAGTATTGCTTTCCTAAGGAGCTCACCCAGACCTTCATGAGTTGCACCCTGATCACTGgtacgtaggggagttggtatgggaataaggataaacaaagccaggagggt Alignment from Exonerate_protein2genome TACCTTTGTGTTG---GATGAGTTTAAGCGTAAGTACTCCAATGAGGACACCCTCTCTGTGGCACTGCCATATTTTTGGGAGCACTTTGATAAAGATGGCTGGTCCCTGTGGTATGCCGAGTACCGCTTCCCTGAAGAGCTGACCCAGACCTTCATGAGTTGCAACCTCATCACTG cagtcccactgatgctcccatgtatagcgacactaatttttgttactcagGACCTTTGTGTTAGATGATGAGTTTAAGCATAAGTATTCCAATGAGGACACACTTTCTGTGGCACTACCGTACTTTTGGGAGTACTATGAC---AATGGCTGGTCGCTCTGGTATGCTGAGTATTGCTTTCCTAAGGAGCTCACCCAGACCTTCATGAGTTGCACCCTGATCACTGgtacgtaggggagttggtatgggaataaggataaacaaagccaggagggt Alignment from Exonerate_coding2genome TACCTTTGTGTTG---GATGAGTTTAAGCGTAAGTACTCCAATGAGGACACCCTCTCTGTGGCACTGCCATATTTTTGGGAGCACTTTGATAAAGATGGCTGGTCCCTGTGGTATGCCGAGTACCGCTTCCCTGAAGAGCTGACCCAGACCTTCATGAGTTGCAACCTCATCACTG cagtcccactgatgctcccatgtatagcgacactaatttttgttactcagGACCTTTGTGTTAGATGATGAGTTTAAGCATAAGTATTCCAATGAGGACACACTTTCTGTGGCACTACCGTACTTTTGGGAGTACTATGAC---AATGGCTGGTCGCTCTGGTATGCTGAGTATTGCTTTCCTAAGGAGCTCACCCAGACCTTCATGAGTTGCACCCTGATCACTGgtacgtaggggagttggtatgggaataaggataaacaaagccaggagggt Alignment from GeneWise TACCTTTGTGTTGGAT---GAGTTTAAGCGTAAGTACTCCAATGAGGACACCCTCTCTGTGGCACTGCCATATTTTTGGGAGCACTTTGATAAAGATGGCTGGTCCCTGTGGTATGCCGAGTACCGCTTCCCTGAAGAGCTGACCCAGACCTTCATGAGTTGCAACCTCATCACTG cagtcccactgatgctcccatgtatagcgacactaatttttgttactcagGACCTTTGTGTTAGATGATGAGTTTAAGCATAAGTATTCCAATGAGGACACACTTTCTGTGGCACTACCGTACTTTTGGGAGTACTATGAC---AATGGCTGGTCGCTCTGGTATGCTGAGTATTGCTTTCCTAAGGAGCTCACCCAGACCTTCATGAGTTGCACCCTGATCACTGgtacgtaggggagttggtatgggaataaggataaacaaagccaggagggt #### Eef1g_ID2567_9 --> 2 - 0 Original Alignment ggATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaataaggataaacaaagccaggagggtagtaaccttatcgtttttgtaggtATGTTCCAGCGGCTGGACAAATTGCGGAAGAACGCCTTTGCTAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCTATTTCTGGAGTTTGGGTCTTTCGTGGCCAGGAGCTTGCCTATCCAgtaagtctttagtaagagagactcatggtggggacatagaagctttgaga Alignment from CESAR ggATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaataaggataaacaaagccaggagggtagtaaccttatcgtttttgtaggtATGTTCCAGCGGCTGGACAAATTGCGGAAGAACGCCTTTGCTAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCTATTTCTGGAGTTTGGGTCTTTCGTGGCCAGGAGCTTGCCTATCCAgtaagtctttagtaagagagactcatggtggggacatagaagctttgaga Alignment from Spaln_aa2Genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaataaggataaacaaagccaggagggtagtaaccttatcgtttttgtagGTATGTTCCAGCGGCTGGACAAATTGCGGAAGAACGCCTTTGCTAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCTATTTCTGGAGTTTGGGTCTTTCGTGGCCAGGAGCTTGCCTATCCAgtaagtctttagtaagagagactcatggtggggacatagaagctttgaga Alignment from Spaln_nt2Genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaataaggataaacaaagccaggagggtagtaaccttatcgtttttgtagGTATGTTCCAGCGGCTGGACAAATTGCGGAAGAACGCCTTTGCTAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCTATTTCTGGAGTTTGGGTCTTTCGTGGCCAGGAGCTTGCCTATCCAgtaagtctttagtaagagagactcatggtggggacatagaagctttgaga Alignment from Pairagon GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaataaggataaacaaagccaggagggtagtaaccttatcgtttttgtagGTATGTTCCAGCGGCTGGACAAATTGCGGAAGAACGCCTTTGCTAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCTATTTCTGGAGTTTGGGTCTTTCGTGGCCAGGAGCTTGCCTATCCAgtaagtctttagtaagagagactcatggtggggacatagaagctttgaga Alignment from Exonerate_protein2genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaataaggataaacaaagccaggagggtagtaaccttatcgtttttgtagGTATGTTCCAGCGGCTGGACAAATTGCGGAAGAACGCCTTTGCTAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCTATTTCTGGAGTTTGGGTCTTTCGTGGCCAGGAGCTTGCCTATCCAgtaagtctttagtaagagagactcatggtggggacatagaagctttgaga Alignment from Exonerate_coding2genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaataaggataaacaaagccaggagggtagtaaccttatcgtttttgtagGTATGTTCCAGCGGCTGGACAAATTGCGGAAGAACGCCTTTGCTAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCTATTTCTGGAGTTTGGGTCTTTCGTGGCCAGGAGCTTGCCTATCCAgtaagtctttagtaagagagactcatggtggggacatagaagctttgaga Alignment from GeneWise -------------------------------------------------GGGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG GAATAAGGATAAACAAAGCCAGGAGGGTAGTAACCTTATCGTTTTTGTAGGTATGTTCCAGCGGCTGGACAAATTGCGGAAGAACGCCTTTGCTAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCTATTTCTGGAGTTTGGGTCTTTCGTGGCCAGGAGCTTGCCTATCCAgtaagtctttagtaagagagactcatggtggggacatagaagctttgaga #### Efemp2_ID1033_6 --> 2 - 1 Original Alignment atGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCg gcagtccatgactttcgccttcctatctcaaattatgcttgtgtttttagatGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGTTGTTTCAATTCATACGGGACCTTTCTGTGTCGGTGTAACCAGGGCTATGAGCTGCACTGGGATGGCTTCTCCTGCAGTggtgagtgtcaactgtgacatcccctttatgccatgtagcaggatttatac Alignment from CESAR atGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCg gcagtccatgactttcgccttcctatctcaaattatgcttgtgtttttagatGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGTTGTTTCAATTCATACGGGACCTTTCTGTGTCGGTGTAACCAGGGCTATGAGCTGCACTGGGATGGCTTCTCCTGCAGTggtgagtgtcaactgtgacatcccctttatgccatgtagcaggatttatac Alignment from Spaln_aa2Genome ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG gcagtccatgactttcgccttcctatctcaaattatgcttgtgtttttagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGTTGTTTCAATTCATACGGGACCTTTCTGTGTCGGTGTAACCAGGGCTATGAGCTGCACTGGGATGGCTTCTCCTGCAGTGgtgagtgtcaactgtgacatcccctttatgccatgtagcaggatttatac Alignment from Spaln_nt2Genome ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG gcagtccatgactttcgccttcctatctcaaattatgcttgtgtttttagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGTTGTTTCAATTCATACGGGACCTTTCTGTGTCGGTGTAACCAGGGCTATGAGCTGCACTGGGATGGCTTCTCCTGCAGTGgtgagtgtcaactgtgacatcccctttatgccatgtagcaggatttatac Alignment from Pairagon ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG gcagtccatgactttcgccttcctatctcaaattatgcttgtgtttttagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGTTGTTTCAATTCATACGGGACCTTTCTGTGTCGGTGTAACCAGGGCTATGAGCTGCACTGGGATGGCTTCTCCTGCAGTGgtgagtgtcaactgtgacatcccctttatgccatgtagcaggatttatac Alignment from Exonerate_protein2genome ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG gcagtccatgactttcgccttcctatctcaaattatgcttgtgtttttagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGTTGTTTCAATTCATACGGGACCTTTCTGTGTCGGTGTAACCAGGGCTATGAGCTGCACTGGGATGGCTTCTCCTGCAGTGgtgagtgtcaactgtgacatcccctttatgccatgtagcaggatttatac Alignment from Exonerate_coding2genome ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG gcagtccatgactttcgccttcctatctcaaattatgcttgtgtttttagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGTTGTTTCAATTCATACGGGACCTTTCTGTGTCGGTGTAACCAGGGCTATGAGCTGCACTGGGATGGCTTCTCCTGCAGTGgtgagtgtcaactgtgacatcccctttatgccatgtagcaggatttatac Alignment from GeneWise ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG gcagtccatgactttcgccttcctatctcaaattatgcttgtgtttttagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGTTGTTTCAATTCATACGGGACCTTTCTGTGTCGGTGTAACCAGGGCTATGAGCTGCACTGGGATGGCTTCTCCTGCAGTGgtgagtgtcaactgtgacatcccctttatgccatgtagcaggatttatac #### Ehbp1l1_ID1217_18 --> 2 - 2 Original Alignment agTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGat ttcttcatagcagggcggaaagaagtccctctgacttctgtttcatacagaaTGGCATACAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTCGAGGGACTCGTATCTTTAGTGAACCAGAGGGAAGAGCTAGTTGGGGATTTAGATCAGAAGGAGCGGgtgtacgtgtgtgagcatgcttggtcctggggaactcccattgaggagtccc Alignment from CESAR agTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGat ttcttcatagcagggcggaaagaagtccctctgacttctgtttcatacagaaTGGCATACAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTCGAGGGACTCGTATCTTTAGTGAACCAGAGGGAAGAGCTAGTTGGGGATTTAGATCAGAAGGAGCGGgtgtacgtgtgtgagcatgcttggtcctggggaactcccattgaggagtccc Alignment from Spaln_aa2Genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT ttcttcatagcagggcggaaagaagtccctctgacttctgtttcatacagAATGGCATACAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTCGAGGGACTCGTATCTTTAGTGAACCAGAGGGAAGAGCTAGTTGGGGATTTAGATCAGAAGGAGCGGGTgtacgtgtgtgagcatgcttggtcctggggaactcccattgaggagtccc Alignment from Spaln_nt2Genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT ttcttcatagcagggcggaaagaagtccctctgacttctgtttcatacagAATGGCATACAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTCGAGGGACTCGTATCTTTAGTGAACCAGAGGGAAGAGCTAGTTGGGGATTTAGATCAGAAGGAGCGGGTgtacgtgtgtgagcatgcttggtcctggggaactcccattgaggagtccc Alignment from Pairagon AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT ttcttcatagcagggcggaaagaagtccctctgacttctgtttcatacagAATGGCATACAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTCGAGGGACTCGTATCTTTAGTGAACCAGAGGGAAGAGCTAGTTGGGGATTTAGATCAGAAGGAGCGGGTgtacgtgtgtgagcatgcttggtcctggggaactcccattgaggagtccc Alignment from Exonerate_protein2genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT ttcttcatagcagggcggaaagaagtccctctgacttctgtttcatacagAATGGCATACAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTCGAGGGACTCGTATCTTTAGTGAACCAGAGGGAAGAGCTAGTTGGGGATTTAGATCAGAAGGAGCGGGTgtacgtgtgtgagcatgcttggtcctggggaactcccattgaggagtccc Alignment from Exonerate_coding2genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT ttcttcatagcagggcggaaagaagtccctctgacttctgtttcatacagAATGGCATACAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTCGAGGGACTCGTATCTTTAGTGAACCAGAGGGAAGAGCTAGTTGGGGATTTAGATCAGAAGGAGCGGGTgtacgtgtgtgagcatgcttggtcctggggaactcccattgaggagtccc Alignment from GeneWise AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT ttcttcatagcagggcggaaagaagtccctctgacttctgtttcatacagAATGGCATACAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTCGAGGGACTCGTATCTTTAGTGAACCAGAGGGAAGAGCTAGTTGGGGATTTAGATCAGAAGGAGCGGGTgtacgtgtgtgagcatgcttggtcctggggaactcccattgaggagtccc #### Ehbp1l1_ID1218_17 --> 1 - 1 Original Alignment cATCGAGGAGCAGGACTTGGAGCGGAGGTTTGAACTGCTGAGCCGAGAGTTGCGGGCCATGCTGGCCATTGAAg ccctagccaaaggccctttccaaaaatctttgtgtgcttattccatgtagcATCAAGGAGCAAGACTTGGAGCGGAGGTTTGAACTGCTAAGCCGTGAGCTGCGGTCCATGTTGGCCATTGAAggtaggtatgtgctggctgatggatattgaaaccagaacaggcctgaaaga Alignment from CESAR cATCGAGGAGCAGGACTTGGAGCGGAGGTTTGAACTGCTGAGCCGAGAGTTGCGGGCCATGCTGGCCATTGAAg ccctagccaaaggccctttccaaaaatctttgtgtgcttattccatgtagcATCAAGGAGCAAGACTTGGAGCGGAGGTTTGAACTGCTAAGCCGTGAGCTGCGGTCCATGTTGGCCATTGAAggtaggtatgtgctggctgatggatattgaaaccagaacaggcctgaaaga Alignment from Spaln_aa2Genome CATCGAGGAGCAGGACTTGGAGCGGAGGTTTGAACTGCTGAGCCGAGAGTTGCGGGCCATGCTGGCCATTGAAG ccctagccaaaggccctttccaaaaatctttgtgtgcttattccatgtagCATCAAGGAGCAAGACTTGGAGCGGAGGTTTGAACTGCTAAGCCGTGAGCTGCGGTCCATGTTGGCCATTGAAGgtaggtatgtgctggctgatggatattgaaaccagaacaggcctgaaaga Alignment from Spaln_nt2Genome CATCGAGGAGCAGGACTTGGAGCGGAGGTTTGAACTGCTGAGCCGAGAGTTGCGGGCCATGCTGGCCATTGAAG ccctagccaaaggccctttccaaaaatctttgtgtgcttattccatgtagCATCAAGGAGCAAGACTTGGAGCGGAGGTTTGAACTGCTAAGCCGTGAGCTGCGGTCCATGTTGGCCATTGAAGgtaggtatgtgctggctgatggatattgaaaccagaacaggcctgaaaga Alignment from Pairagon CATCGAGGAGCAGGACTTGGAGCGGAGGTTTGAACTGCTGAGCCGAGAGTTGCGGGCCATGCTGGCCATTGAAG ccctagccaaaggccctttccaaaaatctttgtgtgcttattccatgtagCATCAAGGAGCAAGACTTGGAGCGGAGGTTTGAACTGCTAAGCCGTGAGCTGCGGTCCATGTTGGCCATTGAAGgtaggtatgtgctggctgatggatattgaaaccagaacaggcctgaaaga Alignment from Exonerate_protein2genome CATCGAGGAGCAGGACTTGGAGCGGAGGTTTGAACTGCTGAGCCGAGAGTTGCGGGCCATGCTGGCCATTGAAG ccctagccaaaggccctttccaaaaatctttgtgtgcttattccatgtagCATCAAGGAGCAAGACTTGGAGCGGAGGTTTGAACTGCTAAGCCGTGAGCTGCGGTCCATGTTGGCCATTGAAGgtaggtatgtgctggctgatggatattgaaaccagaacaggcctgaaaga Alignment from Exonerate_coding2genome CATCGAGGAGCAGGACTTGGAGCGGAGGTTTGAACTGCTGAGCCGAGAGTTGCGGGCCATGCTGGCCATTGAAG ccctagccaaaggccctttccaaaaatctttgtgtgcttattccatgtagCATCAAGGAGCAAGACTTGGAGCGGAGGTTTGAACTGCTAAGCCGTGAGCTGCGGTCCATGTTGGCCATTGAAGgtaggtatgtgctggctgatggatattgaaaccagaacaggcctgaaaga Alignment from GeneWise CATCGAGGAGCAGGACTTGGAGCGGAGGTTTGAACTGCTGAGCCGAGAGTTGCGGGCCATGCTGGCCATTGAAG ccctagccaaaggccctttccaaaaatctttgtgtgcttattccatgtagCATCAAGGAGCAAGACTTGGAGCGGAGGTTTGAACTGCTAAGCCGTGAGCTGCGGTCCATGTTGGCCATTGAAGgtaggtatgtgctggctgatggatattgaaaccagaacaggcctgaaaga #### Ehbp1l1_ID1219_16 --> 2 - 2 Original Alignment gtGCCAACAGGCTGCAGGAGGAGGTGCTGATTCAGGAATGGTTCACCCTGGTCAACAAGAAGAATGCGCTCATCCGGAGGCAGGACCAGCTGCAGCTGct gctgcttaaggcatctcttgtgaggtagtcttcgtttctccttcctttaggtGTCAATCGGTTACAGGAAGAGGTGCTAATTCAGGAGTGGTTTACCTTGGCCAACAAGAAAAATGCGCTTGTCCAGAGGCAAGACCAGTTGCAATTActgtgagttggctgtaatccttctaatgctatgttttctcccacctgctcca Alignment from CESAR gtGCCAACAGGCTGCAGGAGGAGGTGCTGATTCAGGAATGGTTCACCCTGGTCAACAAGAAGAATGCGCTCATCCGGAGGCAGGACCAGCTGCAGCTGct gctgcttaaggcatctcttgtgaggtagtcttcgtttctccttcctttaggtGTCAATCGGTTACAGGAAGAGGTGCTAATTCAGGAGTGGTTTACCTTGGCCAACAAGAAAAATGCGCTTGTCCAGAGGCAAGACCAGTTGCAATTActgtgagttggctgtaatccttctaatgctatgttttctcccacctgctcca Alignment from Spaln_aa2Genome GTGCCAACAGGCTGCAGGAGGAGGTGCTGATTCAGGAATGGTTCACCCTGGTCAACAAGAAGAATGCGCTCATCCGGAGGCAGGACCAGCTGCAGCTGCT gctgcttaaggcatctcttgtgaggtagtcttcgtttctccttcctttagGTGTCAATCGGTTACAGGAAGAGGTGCTAATTCAGGAGTGGTTTACCTTGGCCAACAAGAAAAATGCGCTTGTCCAGAGGCAAGACCAGTTGCAATTACTgtgagttggctgtaatccttctaatgctatgttttctcccacctgctcca Alignment from Spaln_nt2Genome GTGCCAACAGGCTGCAGGAGGAGGTGCTGATTCAGGAATGGTTCACCCTGGTCAACAAGAAGAATGCGCTCATCCGGAGGCAGGACCAGCTGCAGCTGCT gctgcttaaggcatctcttgtgaggtagtcttcgtttctccttcctttagGTGTCAATCGGTTACAGGAAGAGGTGCTAATTCAGGAGTGGTTTACCTTGGCCAACAAGAAAAATGCGCTTGTCCAGAGGCAAGACCAGTTGCAATTACTgtgagttggctgtaatccttctaatgctatgttttctcccacctgctcca Alignment from Pairagon GTGCCAACAGGCTGCAGGAGGAGGTGCTGATTCAGGAATGGTTCACCCTGGTCAACAAGAAGAATGCGCTCATCCGGAGGCAGGACCAGCTGCAGCTGCT gctgcttaaggcatctcttgtgaggtagtcttcgtttctccttcctttagGTGTCAATCGGTTACAGGAAGAGGTGCTAATTCAGGAGTGGTTTACCTTGGCCAACAAGAAAAATGCGCTTGTCCAGAGGCAAGACCAGTTGCAATTACTgtgagttggctgtaatccttctaatgctatgttttctcccacctgctcca Alignment from Exonerate_protein2genome GTGCCAACAGGCTGCAGGAGGAGGTGCTGATTCAGGAATGGTTCACCCTGGTCAACAAGAAGAATGCGCTCATCCGGAGGCAGGACCAGCTGCAGCTGCT gctgcttaaggcatctcttgtgaggtagtcttcgtttctccttcctttagGTGTCAATCGGTTACAGGAAGAGGTGCTAATTCAGGAGTGGTTTACCTTGGCCAACAAGAAAAATGCGCTTGTCCAGAGGCAAGACCAGTTGCAATTACTgtgagttggctgtaatccttctaatgctatgttttctcccacctgctcca Alignment from Exonerate_coding2genome GTGCCAACAGGCTGCAGGAGGAGGTGCTGATTCAGGAATGGTTCACCCTGGTCAACAAGAAGAATGCGCTCATCCGGAGGCAGGACCAGCTGCAGCTGCT gctgcttaaggcatctcttgtgaggtagtcttcgtttctccttcctttagGTGTCAATCGGTTACAGGAAGAGGTGCTAATTCAGGAGTGGTTTACCTTGGCCAACAAGAAAAATGCGCTTGTCCAGAGGCAAGACCAGTTGCAATTACTgtgagttggctgtaatccttctaatgctatgttttctcccacctgctcca Alignment from GeneWise GTGCCAACAGGCTGCAGGAGGAGGTGCTGATTCAGGAATGGTTCACCCTGGTCAACAAGAAGAATGCGCTCATCCGGAGGCAGGACCAGCTGCAGCTGCT gctgcttaaggcatctcttgtgaggtagtcttcgtttctccttcctttagGTGTCAATCGGTTACAGGAAGAGGTGCTAATTCAGGAGTGGTTTACCTTGGCCAACAAGAAAAATGCGCTTGTCCAGAGGCAAGACCAGTTGCAATTACTgtgagttggctgtaatccttctaatgctatgttttctcccacctgctcca #### Ehbp1l1_ID1221_14 --> 2 - 0 Original Alignment gtGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG ctggaatttctgttattcactgaaagggtgttttctcttcttctgcccaggtGGGCCACCACCTACTGAAAAGTCATCACCTAGCCTGGAGGAAGAGACAGGGCTGgtaagaattggtaggttgaatggtggctgtgttactttcctgagtggctc Alignment from CESAR gtGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG ctggaatttctgttattcactgaaagggtgttttctcttcttctgcccaggtGGGCCACCACCTACTGAAAAGTCATCACCTAGCCTGGAGGAAGAGACAGGGCTGgtaagaattggtaggttgaatggtggctgtgttactttcctgagtggctc Alignment from Spaln_aa2Genome GTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG ctggaatttctgttattcactgaaagggtgttttctcttcttctgcccagGTGGGCCACCACCTACTGAAAAGTCATCACCTAGCCTGGAGGAAGAGACAGGGCTGgtaagaattggtaggttgaatggtggctgtgttactttcctgagtggctc Alignment from Spaln_nt2Genome GTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG ctggaatttctgttattcactgaaagggtgttttctcttcttctgcccagGTGGGCCACCACCTACTGAAAAGTCATCACCTAGCCTGGAGGAAGAGACAGGGCTGgtaagaattggtaggttgaatggtggctgtgttactttcctgagtggctc Alignment from Pairagon GTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG ctggaatttctgttattcactgaaagggtgttttctcttcttctgcccagGTGGGCCACCACCTACTGAAAAGTCATCACCTAGCCTGGAGGAAGAGACAGGGCTGgtaagaattggtaggttgaatggtggctgtgttactttcctgagtggctc Alignment from Exonerate_protein2genome GTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG ctggaatttctgttattcactgaaagggtgttttctcttcttctgcccagGTGGGCCACCACCTACTGAAAAGTCATCACCTAGCCTGGAGGAAGAGACAGGGCTGgtaagaattggtaggttgaatggtggctgtgttactttcctgagtggctc Alignment from Exonerate_coding2genome GTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG ctggaatttctgttattcactgaaagggtgttttctcttcttctgcccagGTGGGCCACCACCTACTGAAAAGTCATCACCTAGCCTGGAGGAAGAGACAGGGCTGgtaagaattggtaggttgaatggtggctgtgttactttcctgagtggctc Alignment from GeneWise GTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG ctggaatttctgttattcactgaaagggtgttttctcttcttctgcccagGTGGGCCACCACCTACTGAAAAGTCATCACCTAGCCTGGAGGAAGAGACAGGGCTGgtaagaattggtaggttgaatggtggctgtgttactttcctgagtggctc #### Ehbp1l1_ID1223_12 --> 0 - 0 Original Alignment GCTTTTGATGGCTTCGCTGCCCTGGGTGTGTCTCGGCTGCTCGAGCCGGCGGACATGGTACTTCTGTCCGTACCTGACAAGCTCATCGTCATGACGTACCTGTGCCAGATCCGTGCCTTCTGCACTGGGCAGGAGCTGCAGCTGGTGCAACTGGAGGGCGGCGGTGGCTCTGGCACTTATCGTGTGGGCAACGCCCAGCCGAGCCTGCCCGACTGTCTGGACGCAGGAGACCTGGCGCAGCGATTACGCGAGCATGGGGCTGAAGTGCCCACAGAACCTAAGGAGGCTGTGAACCGCGGGACTGGGGCAATACCAAAGGTGGCCTCCAGGGACACGGACCTGAGCTGCTCCTCTAAGGATGGGGAGGCAGAGGTTGCCCAGGAAGCAATCCCTCAAGAGGCGCCCACCGACGGCCCTAGAGCCAGGTCGTCCACAACCCCGGTGGTCCCTGCAGAGGGGCTGGTGAACGGAGTGGGGGCGTCAGGTGGTGTGAGTGGTGTGAGACTGAGACGGTCCTCTGTCAATGGGGAGGCTGGGCCAGTACCTCCACCCCGAGCACATGGCTCTTTCTCCCACGTGCGGGACGCCGATTTGCTAAAGAAGAGGCGATCGAGGTTAAGGAATAGCAACTCTTTCTCTGTGGATGACCAGGACTCTGGAGCTGCAGTTGGAGCAGGGCCTGCAGGGCCTGGAGCTGTG tgtaatagatacatttattcttcatgcttattttcctttttttctaatagGCTTTTGAAGGCTTTGGTACTCTTAGTGTATCTAGGCTGCTTGGGCCAGCAGACATGGTAGTTCTGTCAGTACCTGACAAGCTCATTGTCATGACATACTTGTTGCAGATCCGTGCCTTGTGTACAGGGCAAGAGCTGCAACTAGTTCAGCTGAAGGGTGGTGGTGCTTCAGGGACTCATCATGTTGACAATACTCAGCTCAGCCTGCCAGACTGCCTTGATGTAGGAGATTTGGCACAGCAATTAAAAGAGCATGGGGCTGAAGTACCTACTGAACCTAAGGAGGCTGTGAACTGTGGGACTGGGGCAATACCGAAGTTGGCCTCCAGGGACATGGAC---CACTGTTCCTCTAAGGATGGTGAGGCAGAGGTTGCACAAGAGGCAATCCCCCAAAAGCCCCCTACTGATGGACCAAGAGCCAGATTGTCCACCACCCCCGTAGTTCCTGCAGAGGGGTTAGTAAATGGATTGGAGTCATCAGGAGGAGTAAGTGGTGTAAGGCTGAGATGGACATCCATCAATGGAGAGACCAGGCCAGTG---CCCCCCCGGGCATATGGATCCTTCTCACATGTA------------GTGCTAAAGAAGAGGCAATCCAGGTTGAGGAACAGCAACTCCTTTGCTGTAGATGACCGCGACTCTGGAACGACAGTTGGAGCTGGGCCTGCTGGACCTGGAGCTGTTgtgtgtaataccattttgctgctgcacgaaacattgtcaagctttaggag Alignment from CESAR GCTTTTGATGGCTTCGCTGCCCTGGGTGTGTCTCGGCTGCTCGAGCCGGCGGACATGGTACTTCTGTCCGTACCTGACAAGCTCATCGTCATGACGTACCTGTGCCAGATCCGTGCCTTCTGCACTGGGCAGGAGCTGCAGCTGGTGCAACTGGAGGGCGGCGGTGGCTCTGGCACTTATCGTGTGGGCAACGCCCAGCCGAGCCTGCCCGACTGTCTGGACGCAGGAGACCTGGCGCAGCGATTACGCGAGCATGGGGCTGAAGTGCCCACAGAACCTAAGGAGGCTGTGAACCGCGGGACTGGGGCAATACCAAAGGTGGCCTCCAGGGACACGGACCTGAGCTGCTCCTCTAAGGATGGGGAGGCAGAGGTTGCCCAGGAAGCAATCCCTCAAGAGGCGCCCACCGACGGCCCTAGAGCCAGGTCGTCCACAACCCCGGTGGTCCCTGCAGAGGGGCTGGTGAACGGAGTGGGGGCGTCAGGTGGTGTGAGTGGTGTGAGACTGAGACGGTCCTCTGTCAATGGGGAGGCTGGGCCAGTACCTCCACCCCGAGCACATGGCTCTTTCTCCCACGTGCGGGACGCCGATTTGCTAAAGAAGAGGCGATCGAGGTTAAGGAATAGCAACTCTTTCTCTGTGGATGACCAGGACTCTGGAGCTGCAGTTGGAGCAGGGCCTGCAGGGCCTGGAGCTGTG tgtaatagatacatttattcttcatgcttattttcctttttttctaatagGCTTTTGAAGGCTTTGGTACTCTTAGTGTATCTAGGCTGCTTGGGCCAGCAGACATGGTAGTTCTGTCAGTACCTGACAAGCTCATTGTCATGACATACTTGTTGCAGATCCGTGCCTTGTGTACAGGGCAAGAGCTGCAACTAGTTCAGCTGAAGGGTGGTGGTGCTTCAGGGACTCATCATGTTGACAATACTCAGCTCAGCCTGCCAGACTGCCTTGATGTAGGAGATTTGGCACAGCAATTAAAAGAGCATGGGGCTGAAGTACCTACTGAACCTAAGGAGGCTGTGAACTGTGGGACTGGGGCAATACCGAAGTTGGCCTCCAGGGACATGGAC---CACTGTTCCTCTAAGGATGGTGAGGCAGAGGTTGCACAAGAGGCAATCCCCCAAAAGCCCCCTACTGATGGACCAAGAGCCAGATTGTCCACCACCCCCGTAGTTCCTGCAGAGGGGTTAGTAAATGGATTGGAGTCATCAGGAGGAGTAAGTGGTGTAAGGCTGAGATGGACATCCATCAATGGAGAGACCAGGCCAGTGCCC---CCCCGGGCATATGGATCCTTCTCACATGTA------------GTGCTAAAGAAGAGGCAATCCAGGTTGAGGAACAGCAACTCCTTTGCTGTAGATGACCGCGACTCTGGAACGACAGTTGGAGCTGGGCCTGCTGGACCTGGAGCTGTTgtgtgtaataccattttgctgctgcacgaaacattgtcaagctttaggag Alignment from Spaln_aa2Genome GCTTTTGATGGCTTCGCTGCCCTGGGTGTGTCTCGGCTGCTCGAGCCGGCGGACATGGTACTTCTGTCCGTACCTGACAAGCTCATCGTCATGACGTACCTGTGCCAGATCCGTGCCTTCTGCACTGGGCAGGAGCTGCAGCTGGTGCAACTGGAGGGCGGCGGTGGCTCTGGCACTTATCGTGTGGGCAACGCCCAGCCGAGCCTGCCCGACTGTCTGGACGCAGGAGACCTGGCGCAGCGATTACGCGAGCATGGGGCTGAAGTGCCCACAGAACCTAAGGAGGCTGTGAACCGCGGGACTGGGGCAATACCAAAGGTGGCCTCCAGGGACACGGACCTGAGCTGCTCCTCTAAGGATGGGGAGGCAGAGGTTGCCCAGGAAGCAATCCCTCAAGAGGCGCCCACCGACGGCCCTAGAGCCAGGTCGTCCACAACCCCGGTGGTCCCTGCAGAGGGGCTGGTGAACGGAGTGGGGGCGTCAGGTGGTGTGAGTGGTGTGAGACTGAGACGGTCCTCTGTCAATGGGGAGGCTGGGCCAGTACCTCCACCCCGAGCACATGGCTCTTTCTCCCACGTGCGGGACGCCGATTTGCTAAAGAAGAGGCGATCGAGGTTAAGGAATAGCAACTCTTTCTCTGTGGATGACCAGGACTCTGGAGCTGCAGTTGGAGCAGGGCCTGCAGGGCCTGGAGCTGTG tgtaatagatacatttattcttcatgcttattttcctttttttctaatagGCTTTTGAAGGCTTTGGTACTCTTAGTGTATCTAGGCTGCTTGGGCCAGCAGACATGGTAGTTCTGTCAGTACCTGACAAGCTCATTGTCATGACATACTTGTTGCAGATCCGTGCCTTGTGTACAGGGCAAGAGCTGCAACTAGTTCAGCTGAAGGGTGGTGGTGCTTCAGGGACTCATCATGTTGACAATACTCAGCTCAGCCTGCCAGACTGCCTTGATGTAGGAGATTTGGCACAGCAATTAAAAGAGCATGGGGCTGAAGTACCTACTGAACCTAAGGAGGCTGTGAACTGTGGGACTGGGGCAATACCGAAGTTGGCCTCCAGGGACATGGAC---CACTGTTCCTCTAAGGATGGTGAGGCAGAGGTTGCACAAGAGGCAATCCCCCAAAAGCCCCCTACTGATGGACCAAGAGCCAGATTGTCCACCACCCCCGTAGTTCCTGCAGAGGGGTTAGTAAATGGATTGGAGTCATCAGGAGGAGTAAGTGGTGTAAGGCTGAGATGGACATCCATCAATGGAGAGACCAGGCCAGTG---CCCCCCCGGGCATATGGATCCTTCTCACATGTA------------GTGCTAAAGAAGAGGCAATCCAGGTTGAGGAACAGCAACTCCTTTGCTGTAGATGACCGCGACTCTGGAACGACAGTTGGAGCTGGGCCTGCTGGACCTGGAGCTGTTgtgtgtaataccattttgctgctgcacgaaacattgtcaagctttaggag Alignment from Spaln_nt2Genome GCTTTTGATGGCTTCGCTGCCCTGGGTGTGTCTCGGCTGCTCGAGCCGGCGGACATGGTACTTCTGTCCGTACCTGACAAGCTCATCGTCATGACGTACCTGTGCCAGATCCGTGCCTTCTGCACTGGGCAGGAGCTGCAGCTGGTGCAACTGGAGGGCGGCGGTGGCTCTGGCACTTATCGTGTGGGCAACGCCCAGCCGAGCCTGCCCGACTGTCTGGACGCAGGAGACCTGGCGCAGCGATTACGCGAGCATGGGGCTGAAGTGCCCACAGAACCTAAGGAGGCTGTGAACCGCGGGACTGGGGCAATACCAAAGGTGGCCTCCAGGGACACGGACCTGAGCTGCTCCTCTAAGGATGGGGAGGCAGAGGTTGCCCAGGAAGCAATCCCTCAAGAGGCGCCCACCGACGGCCCTAGAGCCAGGTCGTCCACAACCCCGGTGGTCCCTGCAGAGGGGCTGGTGAACGGAGTGGGGGCGTCAGGTGGTGTGAGTGGTGTGAGACTGAGACGGTCCTCTGTCAATGGGGAGGCTGGGCCAGTACCTCCACCCCGAGCACATGGCTCTTTCTCCCACGTGCGGGACGCCGATTTGCTAAAGAAGAGGCGATCGAGGTTAAGGAATAGCAACTCTTTCTCTGTGGATGACCAGGACTCTGGAGCTGCAGTTGGAGCAGGGCCTGCAGGGCCTGGAGCTGTG tgtaatagatacatttattcttcatgcttattttcctttttttctaatagGCTTTTGAAGGCTTTGGTACTCTTAGTGTATCTAGGCTGCTTGGGCCAGCAGACATGGTAGTTCTGTCAGTACCTGACAAGCTCATTGTCATGACATACTTGTTGCAGATCCGTGCCTTGTGTACAGGGCAAGAGCTGCAACTAGTTCAGCTGAAGGGTGGTGGTGCTTCAGGGACTCATCATGTTGACAATACTCAGCTCAGCCTGCCAGACTGCCTTGATGTAGGAGATTTGGCACAGCAATTAAAAGAGCATGGGGCTGAAGTACCTACTGAACCTAAGGAGGCTGTGAACTGTGGGACTGGGGCAATACCGAAGTTGGCCTCCAGGGACATGGACC---ACTGTTCCTCTAAGGATGGTGAGGCAGAGGTTGCACAAGAGGCAATCCCCCAAAAGCCCCCTACTGATGGACCAAGAGCCAGATTGTCCACCACCCCCGTAGTTCCTGCAGAGGGGTTAGTAAATGGATTGGAGTCATCAGGAGGAGTAAGTGGTGTAAGGCTGAGATGGACATCCATCAATGGAGAGACCAGGCCAGT---GCCCCCCCGGGCATATGGATCCTTCTCACATGT------------AGTGCTAAAGAAGAGGCAATCCAGGTTGAGGAACAGCAACTCCTTTGCTGTAGATGACCGCGACTCTGGAACGACAGTTGGAGCTGGGCCTGCTGGACCTGGAGCTGTTgtgtgtaataccattttgctgctgcacgaaacattgtcaagctttaggag Alignment from Pairagon GCTTTTGATGGCTTCGCTGCCCTGGGTGTGTCTCGGCTGCTCGAGCCGGCGGACATGGTACTTCTGTCCGTACCTGACAAGCTCATCGTCATGACGTACCTGTGCCAGATCCGTGCCTTCTGCACTGGGCAGGAGCTGCAGCTGGTGCAACTGGAGGGCGGCGGTGGCTCTGGCACTTATCGTGTGGGCAACGCCCAGCCGAGCCTGCCCGACTGTCTGGACGCAGGAGACCTGGCGCAGCGATTACGCGAGCATGGGGCTGAAGTGCCCACAGAACCTAAGGAGGCTGTGAACCGCGGGACTGGGGCAATACCAAAGGTGGCCTCCAGGGACACGGACCTGAGCTGCTCCTCTAAGGATGGGGAGGCAGAGGTTGCCCAGGAAGCAATCCCTCAAGAGGCGCCCACCGACGGCCCTAGAGCCAGGTCGTCCACAACCCCGGTGGTCCCTGCAGAGGGGCTGGTGAACGGAGTGGGGGCGTCAGGTGGTGTGAGTGGTGTGAGACTGAGACGGTCCTCTGTCAATGGGGAGGCTGGGCCAGTACCTCCACCCCGAGCACATGGCTCTTTCTCCCACGTGCGGGACGCCGATTTGCTAAAGAAGAGGCGATCGAGGTTAAGGAATAGCAACTCTTTCTCTGTGGATGACCAGGACTCTGGAGCTGCAGTTGGAGCAGGGCCTGCAGGGCCTGGAGCTGTG tgtaatagatacatttattcttcatgcttattttcctttttttctaatagGCTTTTGAAGGCTTTGGTACTCTTAGTGTATCTAGGCTGCTTGGGCCAGCAGACATGGTAGTTCTGTCAGTACCTGACAAGCTCATTGTCATGACATACTTGTTGCAGATCCGTGCCTTGTGTACAGGGCAAGAGCTGCAACTAGTTCAGCTGAAGGGTGGTGGTGCTTCAGGGACTCATCATGTTGACAATACTCAGCTCAGCCTGCCAGACTGCCTTGATGTAGGAGATTTGGCACAGCAATTAAAAGAGCATGGGGCTGAAGTACCTACTGAACCTAAGGAGGCTGTGAACTGTGGGACTGGGGCAATACCGAAGTTGGCCTCCAGGGACATGGACC---ACTGTTCCTCTAAGGATGGTGAGGCAGAGGTTGCACAAGAGGCAATCCCCCAAAAGCCCCCTACTGATGGACCAAGAGCCAGATTGTCCACCACCCCCGTAGTTCCTGCAGAGGGGTTAGTAAATGGATTGGAGTCATCAGGAGGAGTAAGTGGTGTAAGGCTGAGATGGACATCCATCAATGGAGAGACCAGGCCAGTGCCC---CCCCGGGCATATGGATCCTTCTCACATGTAG------------TGCTAAAGAAGAGGCAATCCAGGTTGAGGAACAGCAACTCCTTTGCTGTAGATGACCGCGACTCTGGAACGACAGTTGGAGCTGGGCCTGCTGGACCTGGAGCTGTTgtgtgtaataccattttgctgctgcacgaaacattgtcaagctttaggag Alignment from Exonerate_protein2genome GCTTTTGATGGCTTCGCTGCCCTGGGTGTGTCTCGGCTGCTCGAGCCGGCGGACATGGTACTTCTGTCCGTACCTGACAAGCTCATCGTCATGACGTACCTGTGCCAGATCCGTGCCTTCTGCACTGGGCAGGAGCTGCAGCTGGTGCAACTGGAGGGCGGCGGTGGCTCTGGCACTTATCGTGTGGGCAACGCCCAGCCGAGCCTGCCCGACTGTCTGGACGCAGGAGACCTGGCGCAGCGATTACGCGAGCATGGGGCTGAAGTGCCCACAGAACCTAAGGAGGCTGTGAACCGCGGGACTGGGGCAATACCAAAGGTGGCCTCCAGGGACACGGACCTGAGCTGCTCCTCTAAGGATGGGGAGGCAGAGGTTGCCCAGGAAGCAATCCCTCAAGAGGCGCCCACCGACGGCCCTAGAGCCAGGTCGTCCACAACCCCGGTGGTCCCTGCAGAGGGGCTGGTGAACGGAGTGGGGGCGTCAGGTGGTGTGAGTGGTGTGAGACTGAGACGGTCCTCTGTCAATGGGGAGGCTGGGCCAGTACCTCCACCCCGAGCACATGGCTCTTTCTCCCACGTGCGGGACGCCGATTTGCTAAAGAAGAGGCGATCGAGGTTAAGGAATAGCAACTCTTTCTCTGTGGATGACCAGGACTCTGGAGCTGCAGTTGGAGCAGGGCCTGCAGGGCCTGGAGCTGTG tgtaatagatacatttattcttcatgcttattttcctttttttctaatagGCTTTTGAAGGCTTTGGTACTCTTAGTGTATCTAGGCTGCTTGGGCCAGCAGACATGGTAGTTCTGTCAGTACCTGACAAGCTCATTGTCATGACATACTTGTTGCAGATCCGTGCCTTGTGTACAGGGCAAGAGCTGCAACTAGTTCAGCTGAAGGGTGGTGGTGCTTCAGGGACTCATCATGTTGACAATACTCAGCTCAGCCTGCCAGACTGCCTTGATGTAGGAGATTTGGCACAGCAATTAAAAGAGCATGGGGCTGAAGTACCTACTGAACCTAAGGAGGCTGTGAACTGTGGGACTGGGGCAATACCGAAGTTGGCCTCCAGGGACATGGAC---CACTGTTCCTCTAAGGATGGTGAGGCAGAGGTTGCACAAGAGGCAATCCCCCAAAAGCCCCCTACTGATGGACCAAGAGCCAGATTGTCCACCACCCCCGTAGTTCCTGCAGAGGGGTTAGTAAATGGATTGGAGTCATCAGGAGGAGTAAGTGGTGTAAGGCTGAGATGGACATCCATCAATGGAGAGACCAGGCCAGTG---CCCCCCCGGGCATATGGATCCTTCTCACATGTA------------GTGCTAAAGAAGAGGCAATCCAGGTTGAGGAACAGCAACTCCTTTGCTGTAGATGACCGCGACTCTGGAACGACAGTTGGAGCTGGGCCTGCTGGACCTGGAGCTGTTgtgtgtaataccattttgctgctgcacgaaacattgtcaagctttaggag Alignment from Exonerate_coding2genome GCTTTTGATGGCTTCGCTGCCCTGGGTGTGTCTCGGCTGCTCGAGCCGGCGGACATGGTACTTCTGTCCGTACCTGACAAGCTCATCGTCATGACGTACCTGTGCCAGATCCGTGCCTTCTGCACTGGGCAGGAGCTGCAGCTGGTGCAACTGGAGGGCGGCGGTGGCTCTGGCACTTATCGTGTGGGCAACGCCCAGCCGAGCCTGCCCGACTGTCTGGACGCAGGAGACCTGGCGCAGCGATTACGCGAGCATGGGGCTGAAGTGCCCACAGAACCTAAGGAGGCTGTGAACCGCGGGACTGGGGCAATACCAAAGGTGGCCTCCAGGGACACGGACCTGAGCTGCTCCTCTAAGGATGGGGAGGCAGAGGTTGCCCAGGAAGCAATCCCTCAAGAGGCGCCCACCGACGGCCCTAGAGCCAGGTCGTCCACAACCCCGGTGGTCCCTGCAGAGGGGCTGGTGAACGGAGTGGGGGCGTCAGGTGGTGTGAGTGGTGTGAGACTGAGACGGTCCTCTGTCAATGGGGAGGCTGGGCCAGTACCTCCACCCCGAGCACATGGCTCTTTCTCCCACGTGCGGGACGCCGATTTGCTAAAGAAGAGGCGATCGAGGTTAAGGAATAGCAACTCTTTCTCTGTGGATGACCAGGACTCTGGAGCTGCAGTTGGAGCAGGGCCTGCAGGGCCTGGAGCTGTG tgtaatagatacatttattcttcatgcttattttcctttttttctaatagGCTTTTGAAGGCTTTGGTACTCTTAGTGTATCTAGGCTGCTTGGGCCAGCAGACATGGTAGTTCTGTCAGTACCTGACAAGCTCATTGTCATGACATACTTGTTGCAGATCCGTGCCTTGTGTACAGGGCAAGAGCTGCAACTAGTTCAGCTGAAGGGTGGTGGTGCTTCAGGGACTCATCATGTTGACAATACTCAGCTCAGCCTGCCAGACTGCCTTGATGTAGGAGATTTGGCACAGCAATTAAAAGAGCATGGGGCTGAAGTACCTACTGAACCTAAGGAGGCTGTGAACTGTGGGACTGGGGCAATACCGAAGTTGGCCTCCAGGGACATGGAC---CACTGTTCCTCTAAGGATGGTGAGGCAGAGGTTGCACAAGAGGCAATCCCCCAAAAGCCCCCTACTGATGGACCAAGAGCCAGATTGTCCACCACCCCCGTAGTTCCTGCAGAGGGGTTAGTAAATGGATTGGAGTCATCAGGAGGAGTAAGTGGTGTAAGGCTGAGATGGACATCCATCAATGGAGAGACCAGGCCAGTG---CCCCCCCGGGCATATGGATCCTTCTCACATGTA------------GTGCTAAAGAAGAGGCAATCCAGGTTGAGGAACAGCAACTCCTTTGCTGTAGATGACCGCGACTCTGGAACGACAGTTGGAGCTGGGCCTGCTGGACCTGGAGCTGTTgtgtgtaataccattttgctgctgcacgaaacattgtcaagctttaggag Alignment from GeneWise GCTTTTGATGGCTTCGCTGCCCTGGGTGTGTCTCGGCTGCTCGAGCCGGCGGACATGGTACTTCTGTCCGTACCTGACAAGCTCATCGTCATGACGTACCTGTGCCAGATCCGTGCCTTCTGCACTGGGCAGGAGCTGCAGCTGGTGCAACTGGAGGGCGGCGGTGGCTCTGGCACTTATCGTGTGGGCAACGCCCAGCCGAGCCTGCCCGACTGTCTGGACGCAGGAGACCTGGCGCAGCGATTACGCGAGCATGGGGCTGAAGTGCCCACAGAACCTAAGGAGGCTGTGAACCGCGGGACTGGGGCAATACCAAAGGTGGCCTCCAGGGACACGGACCTGAGCTGCTCCTCTAAGGATGGGGAGGCAGAGGTTGCCCAGGAAGCAATCCCTCAAGAGGCGCCCACCGACGGCCCTAGAGCCAGGTCGTCCACAACCCCGGTGGTCCCTGCAGAGGGGCTGGTGAACGGAGTGGGGGCGTCAGGTGGTGTGAGTGGTGTGAGACTGAGACGGTCCTCTGTCAATGGGGAGGCTGGGCCAGTACCTCCACCCCGAGCACATGGCTCTTTCTCCCACGTGCGGGACGCCGATTTGCTAAAGAAGAGGCGATCGAGGTTAAGGAATAGCAACTCTTTCTCTGTGGATGACCAGGACTCTGGAGCTGCAGTTGGAGCAGGGCCTGCAGGGCCTGGAGCTGTG tgtaatagatacatttattcttcatgcttattttcctttttttctaatagGCTTTTGAAGGCTTTGGTACTCTTAGTGTATCTAGGCTGCTTGGGCCAGCAGACATGGTAGTTCTGTCAGTACCTGACAAGCTCATTGTCATGACATACTTGTTGCAGATCCGTGCCTTGTGTACAGGGCAAGAGCTGCAACTAGTTCAGCTGAAGGGTGGTGGTGCTTCAGGGACTCATCATGTTGACAATACTCAGCTCAGCCTGCCAGACTGCCTTGATGTAGGAGATTTGGCACAGCAATTAAAAGAGCATGGGGCTGAAGTACCTACTGAACCTAAGGAGGCTGTGAACTGTGGGACTGGGGCAATACCGAAGTTGGCCTCCAGGGACATGGAC---CACTGTTCCTCTAAGGATGGTGAGGCAGAGGTTGCACAAGAGGCAATCCCCCAAAAGCCCCCTACTGATGGACCAAGAGCCAGATTGTCCACCACCCCCGTAGTTCCTGCAGAGGGGTTAGTAAATGGATTGGAGTCATCAGGAGGAGTAAGTGGTGTAAGGCTGAGATGGACATCCATCAATGGAGAGACCAGGCCAGTGCCCCCC---CGGGCATATGGATCCTTCTCACATGTA------------GTGCTAAAGAAGAGGCAATCCAGGTTGAGGAACAGCAACTCCTTTGCTGTAGATGACCGCGACTCTGGAACGACAGTTGGAGCTGGGCCTGCTGGACCTGGAGCTGTTgtgtgtaataccattttgctgctgcacgaaacattgtcaagctttaggag #### Ehbp1l1_ID1228_7 --> 2 - 1 Original Alignment atCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAg tatgcctgtgtatgacttcatccctcagaagattctttctctttatctagatCTGTCATGTGAGTTGAAGACACTCTGTGAGGAAGAAGATGAAGGTCACATACGTCCCCAGCAGTCAggtaggcctggtaatggggaggcaatctgaacctgcaaaagctgtgtggcc Alignment from CESAR atCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAg tatgcctgtgtatgacttcatccctcagaagattctttctctttatctagatCTGTCATGTGAGTTGAAGACACTCTGTGAGGAAGAAGATGAAGGTCACATACGTCCCCAGCAGTCAggtaggcctggtaatggggaggcaatctgaacctgcaaaagctgtcccctt Alignment from Spaln_aa2Genome ATCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAG tatgcctgtgtatgacttcatccctcagaagattctttctctttatctagATCTGTCATGTGAGTTGAAGACACTCTGTGAGGAAGAAGATGAAGGTCACATACGTCCCCAGCAGTCAGgtaggcctggtaatggggaggcaatctgaacctgcaaaagctgtgtggcc Alignment from Spaln_nt2Genome ATCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAG tatgcctgtgtatgacttcatccctcagaagattctttctctttatctagATCTGTCATGTGAGTTGAAGACACTCTGTGAGGAAGAAGATGAAGGTCACATACGTCCCCAGCAGTCAGgtaggcctggtaatggggaggcaatctgaacctgcaaaagctgtgtggcc Alignment from Pairagon ATCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAG tatgcctgtgtatgacttcatccctcagaagattctttctctttatctagATCTGTCATGTGAGTTGAAGACACTCTGTGAGGAAGAAGATGAAGGTCACATACGTCCCCAGCAGTCAGgtaggcctggtaatggggaggcaatctgaacctgcaaaagctgtgtggcc Alignment from Exonerate_protein2genome tatgcctgtgtatgacttcatccctcagaagattctttctctttatctagatctgtcatgtgagttgaagacactctgtgaggaagaagatgaaggtcacatacgtccccagcagtcaggtaggcctggtaatggggaggcaatctgaacctgcaaaagctgtgtggcc Alignment from Exonerate_coding2genome tatgcctgtgtatgacttcatccctcagaagattctttctctttatctagatctgtcatgtgagttgaagacactctgtgaggaagaagatgaaggtcacatacgtccccagcagtcaggtaggcctggtaatggggaggcaatctgaacctgcaaaagctgtgtggcc Alignment from GeneWise ATCTGTCTCGAGAGCTGAAGACACTCTGTGAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAG tatgcctgtgtatgacttcatccctcagaagattctttctctttatctagATCTGTCATGTGAGTTGAAGACACTCTGTGAGGAAGAAGATGAAGGTCACATACGTCCCCAGCAGTCAGgtaggcctggtaatggggaggcaatctgaacctgcaaaagctgtgtggcc #### Ehbp1l1_ID1233_2 --> 1 - 0 Original Alignment gCAGCCTGACAAGCTGGTGGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAG gcatcctgtaatggtactggctaaccggcaatagaagcttatcgttccaggCAGCCTGACAAACTGGTGGTGGTATGGACTCAACGGAATCGGAGGATTTGCTCCAAGgtaagtaaggtaagctttgggctgggtatgaacaggacaatatacgggga Alignment from CESAR gCAGCCTGACAAGCTGGTGGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAG gcatcctgtaatggtactggctaaccggcaatagaagcttatcgttccaggCAGCCTGACAAACTGGTGGTGGTATGGACTCAACGGAATCGGAGGATTTGCTCCAAGgtaagtaaggtaagctttgggctgggtatgaacaggacaatatacgggga Alignment from Spaln_aa2Genome GCAGCCTGACAAGCTGGTGGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAG gcatcctgtaatggtactggctaaccggcaatagaagcttatcgttccagGCAGCCTGACAAACTGGTGGTGGTATGGACTCAACGGAATCGGAGGATTTGCTCCAAGgtaagtaaggtaagctttgggctgggtatgaacaggacaatatacgggga Alignment from Spaln_nt2Genome GCAGCCTGACAAGCTGGTGGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAG gcatcctgtaatggtactggctaaccggcaatagaagcttatcgttccagGCAGCCTGACAAACTGGTGGTGGTATGGACTCAACGGAATCGGAGGATTTGCTCCAAGgtaagtaaggtaagctttgggctgggtatgaacaggacaatatacgggga Alignment from Pairagon GCAGCCTGACAAGCTGGTGGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAG gcatcctgtaatggtactggctaaccggcaatagaagcttatcgttccagGCAGCCTGACAAACTGGTGGTGGTATGGACTCAACGGAATCGGAGGATTTGCTCCAAGgtaagtaaggtaagctttgggctgggtatgaacaggacaatatacgggga Alignment from Exonerate_protein2genome gcatcctgtaatggtactggctaaccggcaatagaagcttatcgttccaggcagcctgacaaactggtggtggtatggactcaacggaatcggaggatttgctccaaggtaagtaaggtaagctttgggctgggtatgaacaggacaatatacgggga Alignment from Exonerate_coding2genome gcatcctgtaatggtactggctaaccggcaatagaagcttatcgttccaggcagcctgacaaactggtggtggtatggactcaacggaatcggaggatttgctccaaggtaagtaaggtaagctttgggctgggtatgaacaggacaatatacgggga Alignment from GeneWise GCAGCCTGACAAGCTGGTGGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAG gcatcctgtaatggtactggctaaccggcaatagaagcttatcgttccagGCAGCCTGACAAACTGGTGGTGGTATGGACTCAACGGAATCGGAGGATTTGCTCCAAGgtaagtaaggtaagctttgggctgggtatgaacaggacaatatacgggga #### Eif3a_ID13311_19 --> 1 - 1 Original Alignment gGAGTGGAGACGAGAAACTCGGGATGATGAGAGGCCTCACAGGAGAGATGAGGATCGGCTGAGGCGCTTGGGGGGTGACGATGAAGAGAGAGAGTCTTCTCTTAGACCGGATGATGATCGTATCCCCAGGCGTGGCCTGGATGATGACAGAGGGCCTAGACGTGGTCCCGATGAAGATAGATTTTCTCGTAGAGGAACAGATGATGACCGTCCTTCCTGGCGTAATGCAGATGATGATAGGCCTCCCAGGCGAATTGGTGATGATGACAGGGGAAGCTGGCGTCACACAGATGACGACAGACCACCCAGACGGGGACTGGATGATGAGAGAGGAAGCTGGCGTACAGCAGATGAGGACAGAGGACCTAGACGAGGGATGGATGATGACCGGGGGCCAAGACGAGGAGGTGCTGATGATGAACGGTCATCCTGGCGGAATGCTGATGATGATAGGGGTCCCAGGAGAGGCATGGATGATGATAGGGGTCCC---AGGCGAGGGCTGGATGATGACCGAGGACCTTGGAGGAATGCTGCTGAAGATAGGATTTCCAGGAGAGGTGCAGATGATGACCGAGGGCCTTGGAGAAATATGGATGATGATAGGGTTCCTAGAAGGGGTGATGATGCAAGACCTGGTCCTTGGAGACCATTTGTCAAGCCAg gcgttggtttttgcataagctatgccccggggccatctttatcttttcaggGAATGGCAACAGGAGGCTCGGGACGATGACAGGCCTCATAGAAAGGATGAGGATCGATTGCGACGCTTGGGAGGTGATGATGAGGAAAGTGAGTCCTGTCTTAGACCAGATGATGATCGTATCCCCAAACATGGTCTAGATGAT------GGGCCAAGACGTGGTCCTGATGAAGAGAGGTTCTCACGTAAAGGAACTGATGACGATCGTCCTTCGTGGCGTAATTCAGATGATGACAGG------------ATTCGTGATGATGATAAGGGAAGTTGGCATCACATGGATGATGACCGACCACCCAGATGGGGACTGGAT---GAAAAA---GGGTGGCGTACAGCAGATGGGGATAAAGGGCCGAGGCAAGGCATGGATGATGATCGAGGGCCACGACATGGAGGTGCTGATGATGAACAGTTATCCTGGCGGAATGCTGATGATGACAGGGGACCCCAGAGGGGCATGGATGATGATGATGGACCAAAACCACATGGGCTTGATGATGACCAGAGTCCTTGGAGGAATGGTGCA---GATAGGATATCCAGGAGAGGATTGGATGATGACAGAGGCCCCTGGAGAAATATGGATGATGATCGAGTTCTTATAAGGGATGATGATGCAAGACCTGGCCCC------------ATGAAGCCTggtaacattctgagtttaaaagttcaattgtgtgtcacccagtcacaatgt Alignment from CESAR gGAGTGGAGACGAGAAACTCGGGATGATGAGAGGCCTCACAGGAGAGATGAGGATCGGCTGAGGCGCTTGGGGGGTGACGATGAAGAGAGAGAGTCTTCTCTTAGACCGGATGATGATCGTATCCCCAGGCGTGGCCTGGATGATGACAGAGGGCCTAGACGTGGTCCCGATGAAGATAGATTTTCTCGTAGAGGAACAGATGATGACCGTCCTTCCTGGCGTAATGCAGATGATGATAGGCCTCCCAGGCGAATTGGTGATGATGACAGGGGAAGCTGGCGTCACACAGATGACGACAGACCACCCAGACGGGGACTGGATGATGAGAGAGGAAGCTGGCGTACAGCAGATGAGGACAGAGGACCTAGACGAGGGATGGATGATGACCGGGGGCCAAGACGAGGAGGTGCTGATGATGAACGGTCATCCTGGCGGAATGCTGATGATGATAGGGGTCCCAGGAGAGGCATGGATGATGATAGGGGTCCCAGG---CGAGGGCTGGATGATGACCGAGGACCTTGGAGGAATGCTGCTGAAGATAGGATTTCCAGGAGAGGTGCAGATGATGACCGAGGGCCTTGGAGAAATATGGATGATGATAGGGTTCCTAGAAGGGGTGATGATGCAAGACCTGGTCCTTGGAGACCATTTGTCAAGCCAg gcgttggtttttgcataagctatgccccggggccatctttatcttttcaggGAATGGCAACAGGAGGCTCGGGACGATGACAGGCCTCATAGAAAGGATGAGGATCGATTGCGACGCTTGGGAGGTGATGATGAGGAAAGTGAGTCCTGTCTTAGACCAGATGATGATCGTATCCCCAAACATGGTCTAGATGAT------GGGCCAAGACGTGGTCCTGATGAAGAGAGGTTCTCACGTAAAGGAACTGATGACGATCGTCCTTCGTGGCGTAATTCAGATGATGACAGG------------ATTCGTGATGATGATAAGGGAAGTTGGCATCACATGGATGATGACCGACCACCCAGATGGGGACTG---GATGAAAAAGGG---TGGCGTACAGCAGATGGGGATAAAGGGCCGAGGCAAGGCATGGATGATGATCGAGGGCCACGACATGGAGGTGCTGATGATGAACAGTTATCCTGGCGGAATGCTGATGATGACAGGGGACCCCAGAGGGGCATGGATGATGATGATGGACCAAAACCACATGGGCTTGATGATGACCAGAGTCCTTGGAGGAATGGTGCA---GATAGGATATCCAGGAGAGGATTGGATGATGACAGAGGCCCCTGGAGAAATATGGATGATGATCGAGTTCTTATAAGGGATGATGATGCAAGACCTGGCCCC------------ATGAAGCCTggtaacattctgagtttaaaagttcaattgtgtgtcacccagtcacaatgt Alignment from Spaln_aa2Genome GGAGTGGAGACGAGAAACTCGGGATGATGAGAGGCCTCACAGGAGAGATGAGGATCGGCTGAGGCGCTTGGGGGGTGACGATGAAGAGAGAGAGTCTTCTCTTAGACCGGATGATGATCGTATCCCCAGGCGTGGCCTGGATGATGACAGAGGGCCTAGACGTGGTCCCGATGAAGATAGATTTTCTCGTAGAGGAACAGATGATGACCGTCCTTCCTGGCGTAATGCAGATGATGATAGGCCTCCCAGGCGAATTGGTGATGATGACAGGGGAAGCTGGCGTCACACAGATGACGACAGACCACCCAGACGGGGACTGGATGATGAGAGAGGA------ ---AGCTGGCGTACAGCAGATGAGGACAGAGGACCTAGACGAGGGATGGATGATGACCGGGGGCCAAGACGAGGAGGTGCTGATGATGAACGGTCATCCTGGCGGAATGCTGATGATGATAGGGGTCCCAGGAGAGGCATGGATGATGATAGGGGTCCCAGGCGAGGGCTGGATGATGACCGAGGACCTTGGAGGAATGCTGCTGAAGATAGGATTTCCAGGAGAGGTGCAGATGATGACCGAGGGCCTTGGAGAAATATGGATGATGATAGGGTTCCTAGAAGGGGTGATGATGCAAGACCTGGTCCTTGGAGACCATTTGTCAAGCCAG gcgttggtttttgcataagctatgccccggggccatctttatcttttcagGGAATGGCAACAGGAGGCTCGGGACGATGACAGGCCTCATAGAAAGGATGAGGATCGATTGCGACGCTTGGGAGGTGATGATGAGGAAAGTGAGTCCTGTCTTAGACCAGATGATGATCGTATCCCCAAACATGGTCTAGATGAT------GGGCCAAGACGTGGTCCTGATGAAGAGAGGTTCTCACGTAAAGGAACTGATGACGATCGTCCTTCGTGGCGTAATTCAGATGATGAC------------AGGATTCGTGATGATGATAAGGGAAGTTGGCATCACATGGATGATGACCGACCACCCAGATGGGGACTGGATGAAAAAGGGTGGCGTACAgcagatggggataaagggccgaggcaaggcatggatgatgatcgagggccacgacatggaggtgctgatgatgaacagTTATCCTGGCGGAATGCTGATGATGACAGGGGACCCCAGAGGGGCATGGATGATGATGATGGACCAAAACCACATGGGCTTGATGATGACCAGAGTCCTTGGAGGAATGGT---------------------------------GCAGATAGGATATCCAGGAGAGGATTGGATGATGACAGAGGCCCCTGGAGAAAT------------------------------------------------------------ATGGATGATGATCGAGTTCTTATAAGGGATGATGATGCAAGACCTGGCCCC------------ATGAAGCCTGgtaacattctgagtttaaaagttcaattgtgtgtcacccagtcacaatgt Alignment from Spaln_nt2Genome GGAGTGGAGACGAGAAACTCGGGATGATGAGAGGCCTCACAGGAGAGATGAGGATCGGCTGAGGCGCTTGGGGGGTGACGATGAAGAGAGAGAGTCTTCTCTTAGACCGGATGATGATCGTATCCCCAGGCGTGGCCTGGATGATGACAGAGGGCCTAGACGTGGTCCCGATGAAGATAGATTTTCTCGTAGAGGAACAGATGATGACCGTCCTTCCTGGCGTAATGCAGATGATGATAGGCCTCCCAGGCGAATTGGTGATGATGACAGGGGAAGCTGGCGTCACACAGATGACGACAGACCACCCAGACGGGGACTGGATGATGAGAGAGGAAGCTGGCGTACAGCAGATGAGGACAGAGGACCTAGACGAGGGATGGATGATGACCGGGGGCCAAGACGAGGAGGTGCTGATGATGAACGGTCATCCTGGCGGAATGCTGATGATGATAGGGGTCCCAGGAGAGGCATGGATGATGATAGGGGTCCCAGGCGA---GGGCTGGATGATGACCGAGGACCTTGGAGGAATGCTGCTGAAGATAGGATTTCCAGGAGAGGTGCAGATGATGACCGAGGGCCTTGGAGAAATATGGATGATGATAGGGTTCCTAGAAGGGGTGATGATGCAAGACCTGGTCCTTGGAGACCAT gcgttggtttttgcataagctatgccccggggccatctttatcttttcagGGAATGGCAACAGGAGGCTCGGGACGATGACAGGCCTCATAGAAAGGATGAGGATCGATTGCGACGCTTGGGAGGTGATGATGAGGAAAGTGAGTCCTGTCTTAGACCAGATGATGATCGTATCCCCAAACATGGTCTAGATGAT------GGGCCAAGACGTGGTCCTGATGAAGAGAGGTTCTCACGTAAAGGAACTGATGACGATCGTCCTTCGTGGCGTAATTCAGATGATGACAGG------------ATTCGTGATGATGATAAGGGAAGTTGGCATCACATGGATGATGACCGACCACCCAGATGGGGACTGGATGA------AAAAGGGTGGCGTACAGCAGATGGGGATAAAGGGCCGAGGCAAGGCATGGATGATGATCGAGGGCCACGACATGGAGGTGCTGATGATGAACAGTTATCCTGGCGGAATGCTGATGATGACAGGGGACCCCAGAGGGGCATGGATGATGATGATGGACCAAAACCACATGGGCTTGATGATGACCAGAGTCCTTGGAGGAATGGTGC---AGATAGGATATCCAGGAGAGGATTGGATGATGACAGAGGCCCCTGGAGAAATATGGATGATGATCGAGTTCTTATAAGGGATGATGATGCAAGACCTGGCCCCATGAAGCCTGgtaacattctgagtttaaaagttcaattgtgtgtcacccagtcacaatgt Alignment from Pairagon GGAGTGGAGACGAGAAACTCGGGATGATGAGAGGCCTCACAGGAGAGATGAGGATCGGCTGAGGCGCTTGGGGGGTGACGATGAAGAGAGAGAGTCTTCTCTTAGACCGGATGATGATCGTATCCCCAGGCGTGGCCTGGATGATGACAGAGGGCCTAGACGTGGTCCCGATGAAGATAGATTTTCTCGTAGAGGAACAGATGATGACCGTCCTTCCTGGCGTAATGCAGATGATGATAGGCCTCCCAGGCGAATTGGTGATGATGACAGGGGAAGCTGGCGTCACACAGATGACGACAGACCACCCAGACGGGGACTGGATGATGAGAGAGGAAGCTGGCGTACAGCAGATGAGGACAGAGGACCTAGACGAGGGATGGATGATGACCGGGGGCCAAGACGAGGAGGTGCTGATGATGAACGGTCATCCTGGCGGAATGCTGATGATGATAGGGGTCCCAGGAGAGGCATGGATGATGATAGGGGTCCCAGGCGA----------------GGGCTGGATGATGACCGAGGACCTTGGAGGAATGCTGCTGAAGATAGGATTTCCAGGAGAGGTGCAGATGATGACCGAGGGCCTTGGAGAAATATGGATGATGATAGGGTTCCTAGAAGGGGTGATGATGCAAGACCTGGTCCTTGGAGACCATTTGTCAAGCCAG gcgttggtttttgcataagctatgccccggggccatctttatcttttcagGGAATGGCAACAGGAGGCTCGGGACGATGACAGGCCTCATAGAAAGGATGAGGATCGATTGCGACGCTTGGGAGGTGATGATGAGGAAAGTGAGTCCTGTCTTAGACCAGATGATGATCGTATCCCCAAACATGGTCTAGATGAT------GGGCCAAGACGTGGTCCTGATGAAGAGAGGTTCTCACGTAAAGGAACTGATGACGATCGTCCTTCGTGGCGTAATTCAGATGATGACAGG------------ATTCGTGATGATGATAAGGGAAGTTGGCATCACATGGATGATGACCGACCACCCAGATGGGGACTGGATGA------AAAAGGGTGGCGTACAGCAGATGGGGATAAAGGGCCGAGGCAAGGCATGGATGATGATCGAGGGCCACGACATGGAGGTGCTGATGATGAACAGTTATCCTGGCGGAATGCTGATGATGACAGGGGACCCCAGAGGGGCATGGATGATGAT-------------GATGGACCAAAACCACATGGGCTTGATGATGACCAGAGTCCTTGGAGGAATGGTGC---AGATAGGATATCCAGGAGAGGATTGGATGATGACAGAGGCCCCTGGAGAAATATGGATGATGATCGAGTTCTTATAAGGGATGATGATGCAAGACCTGGCCC------------CATGAAGCCTGgtaacattctgagtttaaaagttcaattgtgtgtcacccagtcacaatgt Alignment from Exonerate_protein2genome GGAGTGGAGACGAGAAACTCGGGATGATGAGAGGCCTCACAGGAGAGATGAGGATCGGCTGAGGCGCTTGGGGGGTGACGATGAAGAGAGAGAGTCTTCTCTTAGACCGGATGATGATCGTATCCCCAGGCGTGGCCTGGATGATGACAGAGGGCCTAGACGTGGTCCCGATGAAGATAGATTTTCTCGTAGAGGAACAGATGATGACCGTCCTTCCTGGCGTAATGCAGATGATGATAGGCCTCCCAGGCGAATTGGTGATGATGACAGGGGAAGCTGGCGTCACACAGATGACGACAGACCACCCAGACGGGGACTGGATGATGAGAGAGGAAGCTGGCGTACAGCAGATGAGGACAGAGGACCTAGACGAGGGATGGATGATGACCGGGGGCCAAGACGAGGAGGTGCTGATGATGAACGGTCATCCTGGCGGAATGCTGATGATGATAGGGGTCCCAGGAGAGGCATGGATGATGATAGGGGTCCCAGG---CGAGGGCTGGATGATGACCGAGGACCTTGGAGGAATGCTGCTGAAGATAGGATTTCCAGGAGAGGTGCAGATGATGACCGAGGGCCTTGGAGAAATATGGATGATGATAGGGTTCCTAGAAGGGGTGATGATGCAAGACCTGGTCCTTGGAGACCAT gcgttggtttttgcataagctatgccccggggccatctttatcttttcagGGAATGGCAACAGGAGGCTCGGGACGATGACAGGCCTCATAGAAAGGATGAGGATCGATTGCGACGCTTGGGAGGTGATGATGAGGAAAGTGAGTCCTGTCTTAGACCAGATGATGATCGTATCCCCAAACATGGTCTAGATGAT------GGGCCAAGACGTGGTCCTGATGAAGAGAGGTTCTCACGTAAAGGAACTGATGACGATCGTCCTTCGTGGCGTAATTCAGATGATGAC------------AGGATTCGTGATGATGATAAGGGAAGTTGGCATCACATGGATGATGACCGACCACCCAGATGGGGACTGGATGAAAAA------GGGTGGCGTACAGCAGATGGGGATAAAGGGCCGAGGCAAGGCATGGATGATGATCGAGGGCCACGACATGGAGGTGCTGATGATGAACAGTTATCCTGGCGGAATGCTGATGATGACAGGGGACCCCAGAGGGGCATGGATGATGATGATGGACCAAAACCACATGGGCTTGATGATGACCAGAGTCCTTGGAGGAATGGTGCA---GATAGGATATCCAGGAGAGGATTGGATGATGACAGAGGCCCCTGGAGAAATATGGATGATGATCGAGTTCTTATAAGGGATGATGATGCAAGACCTGGCCCCATGAAGCCTGgtaacattctgagtttaaaagttcaattgtgtgtcacccagtcacaatgt Alignment from Exonerate_coding2genome GGAGTGGAGACGAGAAACTCGGGATGATGAGAGGCCTCACAGGAGAGATGAGGATCGGCTGAGGCGCTTGGGGGGTGACGATGAAGAGAGAGAGTCTTCTCTTAGACCGGATGATGATCGTATCCCCAGGCGTGGCCTGGATGATGACAGAGGGCCTAGACGTGGTCCCGATGAAGATAGATTTTCTCGTAGAGGAACAGATGATGACCGTCCTTCCTGGCGTAATGCAGATGATGATAGGCCTCCCAGGCGAATTGGTGATGATGACAGGGGAAGCTGGCGTCACACAGATGACGACAGACCACCCAGACGGGGACTGGATGATGAGAGAGGAAGCTGGCGTACAGCAGATGAGGACAGAGGACCTAGACGAGGGATGGATGATGACCGGGGGCCAAGACGAGGAGGTGCTGATGATGAACGGTCATCCTGGCGGAATGCTGATGATGATAGGGGTCCCAGGAGAGGCATGGATGATGATAGGGGTCCCAGG---CGAGGGCTGGATGATGACCGAGGACCTTGGAGGAATGCTGCTGAAGATAGGATTTCCAGGAGAGGTGCAGATGATGACCGAGGGCCTTGGAGAAATATGGATGATGATAGGGTTCCTAGAAGGGGTGATGATGCAAGACCTGGTCCTTGGAGACCAT gcgttggtttttgcataagctatgccccggggccatctttatcttttcagGGAATGGCAACAGGAGGCTCGGGACGATGACAGGCCTCATAGAAAGGATGAGGATCGATTGCGACGCTTGGGAGGTGATGATGAGGAAAGTGAGTCCTGTCTTAGACCAGATGATGATCGTATCCCCAAACATGGTCTAGATGAT------GGGCCAAGACGTGGTCCTGATGAAGAGAGGTTCTCACGTAAAGGAACTGATGACGATCGTCCTTCGTGGCGTAATTCAGATGATGAC------------AGGATTCGTGATGATGATAAGGGAAGTTGGCATCACATGGATGATGACCGACCACCCAGATGGGGACTGGATGAAAAA------GGGTGGCGTACAGCAGATGGGGATAAAGGGCCGAGGCAAGGCATGGATGATGATCGAGGGCCACGACATGGAGGTGCTGATGATGAACAGTTATCCTGGCGGAATGCTGATGATGACAGGGGACCCCAGAGGGGCATGGATGATGATGATGGACCAAAACCACATGGGCTTGATGATGACCAGAGTCCTTGGAGGAATGGTGCA---GATAGGATATCCAGGAGAGGATTGGATGATGACAGAGGCCCCTGGAGAAATATGGATGATGATCGAGTTCTTATAAGGGATGATGATGCAAGACCTGGCCCCATGAAGCCTGgtaacattctgagtttaaaagttcaattgtgtgtcacccagtcacaatgt Alignment from GeneWise GGAGTGGAGACGAGAAACTCGGGATGATGAGAGGCCTCACAGGAGAGATGAGGATCGGCTGAGGCGCTTGGGGGGTGACGATGAAGAGAGAGAGTCTTCTCTTAGACCGGATGATGATCGTATCCCCAGGCGTGGCCTGGATGATGACAGAGGGCCTAGACGTGGTCCCGATGAAGATAGATTTTCTCGTAGAGGAACAGATGATGACCGTCCTTCCTGGCGTAATGCAGATGATGATAGGCCTCCCAGGCGAATTGGTGATGATGACAGGGGAAGCTGGCGTCACACAGATGACGACAGACCACCCAGACGGGGACTGGATGATGAGAGAGGAAGCTGGCGTACAGCAGATGAGGACAGAGGACCTAGACGAGGGATGGATGATGACCGGGGGCCAAGACGAGGAGGTGCTGATGATGAACGGTCATCCTGGCGGAATGCTGATGATGATAGGGGTCCCAGGAGAGGCATGGATGATGATAGGGGTCCCAGG---CGAGGGCTGGATGATGACCGAGGACCTTGGAGGAATGCTGCTGAAGATAGGATTTCCAGGAGAGGTGCAGATGATGACCGAGGGCCTTGGAGAAATATGGATGATGATAGGGTTCCTAGAAGGGGTGATGATGCAAGACCTGGTCCTTGGAGACCATTTGTCAAGCCAG gcgttggtttttgcataagctatgccccggggccatctttatcttttcagGGAATGGCAACAGGAGGCTCGGGACGATGACAGGCCTCATAGAAAGGATGAGGATCGATTGCGACGCTTGGGAGGTGATGATGAGGAAAGTGAGTCCTGTCTTAGACCAGATGATGATCGTATCCCCAAACATGGTCTAGATGAT------GGGCCAAGACGTGGTCCTGATGAAGAGAGGTTCTCACGTAAAGGAACTGATGACGATCGTCCTTCGTGGCGTAATTCAGATGATGAC------------AGGATTCGTGATGATGATAAGGGAAGTTGGCATCACATGGATGATGACCGACCACCCAGATGGGGACTGGAT---GAAAAAGGG---TGGCGTACAGCAGATGGGGATAAAGGGCCGAGGCAAGGCATGGATGATGATCGAGGGCCACGACATGGAGGTGCTGATGATGAACAGTTATCCTGGCGGAATGCTGATGATGACAGGGGACCCCAGAGGGGCATGGATGATGATGATGGACCAAAACCACATGGGCTTGATGATGACCAGAGTCCTTGGAGGAATGGTGCA---GATAGGATATCCAGGAGAGGATTGGATGATGACAGAGGCCCCTGGAGAAATATGGATGATGATCGAGTTCTTATAAGGGATGATGATGCAAGACCTGGCCCCATGAAGCCTGGTAACATTCTGAgtttaaaagttcaattgtgtgtcacccagtcacaatgt #### Eif3a_ID13315_15 --> 0 - 0 Original Alignment ATCACTACAATGCAGCTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGTTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTACGAG aaacaagaagagaagtttagagaaaggtctaactgccggcttgtttttagATTACTACAATGCAACTAGAACGTGAAAAAGCTTTGGAGCATAAAAATAGGATGTCACGAATGCTGGAGGACAGAGATTTATTTGTCATGCGCCTCAAAGCTGCCCGGCAGTCTGTTTGTGAGgtcagttacgtctagcattgtgcagaagttattatatacttctagagagg Alignment from CESAR ATCACTACAATGCAGCTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGTTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTACGAG aaacaagaagagaagtttagagaaaggtctaactgccggcttgtttttagATTACTACAATGCAACTAGAACGTGAAAAAGCTTTGGAGCATAAAAATAGGATGTCACGAATGCTGGAGGACAGAGATTTATTTGTCATGCGCCTCAAAGCTGCCCGGCAGTCTGTTTGTGAGgtcagttacgtctagcattgtgcagaagttattatatacttctagagagg Alignment from Spaln_aa2Genome ATCACTACAATGCAGCTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGTTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTACGAG aaacaagaagagaagtttagagaaaggtctaactgccggcttgtttttagATTACTACAATGCAACTAGAACGTGAAAAAGCTTTGGAGCATAAAAATAGGATGTCACGAATGCTGGAGGACAGAGATTTATTTGTCATGCGCCTCAAAGCTGCCCGGCAGTCTGTTTGTGAGgtcagttacgtctagcattgtgcagaagttattatatacttctagagagg Alignment from Spaln_nt2Genome ATCACTACAATGCAGCTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGTTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTACGAG aaacaagaagagaagtttagagaaaggtctaactgccggcttgtttttagATTACTACAATGCAACTAGAACGTGAAAAAGCTTTGGAGCATAAAAATAGGATGTCACGAATGCTGGAGGACAGAGATTTATTTGTCATGCGCCTCAAAGCTGCCCGGCAGTCTGTTTGTGAGgtcagttacgtctagcattgtgcagaagttattatatacttctagagagg Alignment from Pairagon ATCACTACAATGCAGCTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGTTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTACGAG aaacaagaagagaagtttagagaaaggtctaactgccggcttgtttttagATTACTACAATGCAACTAGAACGTGAAAAAGCTTTGGAGCATAAAAATAGGATGTCACGAATGCTGGAGGACAGAGATTTATTTGTCATGCGCCTCAAAGCTGCCCGGCAGTCTGTTTGTGAGgtcagttacgtctagcattgtgcagaagttattatatacttctagagagg Alignment from Exonerate_protein2genome ATCACTACAATGCAGCTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGTTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTACGAG aaacaagaagagaagtttagagaaaggtctaactgccggcttgtttttagATTACTACAATGCAACTAGAACGTGAAAAAGCTTTGGAGCATAAAAATAGGATGTCACGAATGCTGGAGGACAGAGATTTATTTGTCATGCGCCTCAAAGCTGCCCGGCAGTCTGTTTGTGAGgtcagttacgtctagcattgtgcagaagttattatatacttctagagagg Alignment from Exonerate_coding2genome ATCACTACAATGCAGCTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGTTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTACGAG aaacaagaagagaagtttagagaaaggtctaactgccggcttgtttttagATTACTACAATGCAACTAGAACGTGAAAAAGCTTTGGAGCATAAAAATAGGATGTCACGAATGCTGGAGGACAGAGATTTATTTGTCATGCGCCTCAAAGCTGCCCGGCAGTCTGTTTGTGAGgtcagttacgtctagcattgtgcagaagttattatatacttctagagagg Alignment from GeneWise ATCACTACAATGCAGCTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGTTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTACGAG aaacaagaagagaagtttagagaaaggtctaactgccggcttgtttttagATTACTACAATGCAACTAGAACGTGAAAAAGCTTTGGAGCATAAAAATAGGATGTCACGAATGCTGGAGGACAGAGATTTATTTGTCATGCGCCTCAAAGCTGCCCGGCAGTCTGTTTGTGAGgtcagttacgtctagcattgtgcagaagttattatatacttctagagagg #### Eif3a_ID13317_13 --> 0 - 0 Original Alignment GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtagtactttatgataggtctaagaaagctgttttctcgtctatagGACTTTGAAGAACTGGATCAGGATTTTATTATGGCCAAACAGGTAGAGCAGCTGGAAAAGGAAAAGAAGGAACTTCAAGAACGCCTCAAAACACAAGAAGAGAAGgtatttgtggatcactgataagatctgaaagtaaattgcatcaaaagagt Alignment from CESAR GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtagtactttatgataggtctaagaaagctgttttctcgtctatagGACTTTGAAGAACTGGATCAGGATTTTATTATGGCCAAACAGGTAGAGCAGCTGGAAAAGGAAAAGAAGGAACTTCAAGAACGCCTCAAAACACAAGAAGAGAAGgtatttgtggatcactgataagatctgaaagtaaattgcatcaaaagagt Alignment from Spaln_aa2Genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtagtactttatgataggtctaagaaagctgttttctcgtctatagGACTTTGAAGAACTGGATCAGGATTTTATTATGGCCAAACAGGTAGAGCAGCTGGAAAAGGAAAAGAAGGAACTTCAAGAACGCCTCAAAACACAAGAAGAGAAGgtatttgtggatcactgataagatctgaaagtaaattgcatcaaaagagt Alignment from Spaln_nt2Genome GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtagtactttatgataggtctaagaaagctgttttctcgtctatagGACTTTGAAGAACTGGATCAGGATTTTATTATGGCCAAACAGGTAGAGCAGCTGGAAAAGGAAAAGAAGGAACTTCAAGAACGCCTCAAAACACAAGAAGAGAAGgtatttgtggatcactgataagatctgaaagtaaattgcatcaaaagagt Alignment from Pairagon GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtagtactttatgataggtctaagaaagctgttttctcgtctatagGACTTTGAAGAACTGGATCAGGATTTTATTATGGCCAAACAGGTAGAGCAGCTGGAAAAGGAAAAGAAGGAACTTCAAGAACGCCTCAAAACACAAGAAGAGAAGgtatttgtggatcactgataagatctgaaagtaaattgcatcaaaagagt Alignment from Exonerate_protein2genome CCAAAGCATTTAAAGATATTGACATTGAAGACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtagtactttatgatagGTCTAAGAAAGCTGTTTTCTCGTCTATAGGACTTTGAAGAACTGGATCAGGATTTTATTATGGCCAAACAGGTAGAGCAGCTGGAAAAGGAAAAGAAGGAACTTCAAGAACGCCTCAAAACACAAGAAGAGAAGgtatttgtggatcactgataagatctgaaagtaaattgcatcaaaagagt Alignment from Exonerate_coding2genome CCAAAGCATTTAAAGATATTGACATTGAAGACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtagtactttatgatagGTCTAAGAAAGCTGTTTTCTCGTCTATAGGACTTTGAAGAACTGGATCAGGATTTTATTATGGCCAAACAGGTAGAGCAGCTGGAAAAGGAAAAGAAGGAACTTCAAGAACGCCTCAAAACACAAGAAGAGAAGgtatttgtggatcactgataagatctgaaagtaaattgcatcaaaagagt Alignment from GeneWise GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtagtactttatgataggtctaagaaagctgttttctcgtctatagGACTTTGAAGAACTGGATCAGGATTTTATTATGGCCAAACAGGTAGAGCAGCTGGAAAAGGAAAAGAAGGAACTTCAAGAACGCCTCAAAACACAAGAAGAGAAGgtatttgtggatcactgataagatctgaaagtaaattgcatcaaaagagt #### Eif3a_ID13319_11 --> 0 - 0 Original Alignment GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttgacttaacagtctgaacatacagtaaatgctttctttccacaacagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTACAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACTGCTATGTCCTCAGTGCTTGCCAAAGCACTAGGAATTATTAGGCCTGCACACATTTTGgtatgtatctagggaagggatgatttgcacaagaattaatatcatgagag Alignment from CESAR GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttgacttaacagtctgaacatacagtaaatgctttctttccacaacagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTACAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACTGCTATGTCCTCAGTGCTTGCCAAAGCACTAGGAATTATTAGGCCTGCACACATTTTGgtatgtatctagggaagggatgatttgcacaagaattaatatcatgagag Alignment from Spaln_aa2Genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttgacttaacagtctgaacatacagtaaatgctttctttccacaacagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTACAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACTGCTATGTCCTCAGTGCTTGCCAAAGCACTAGGAATTATTAGGCCTGCACACATTTTGgtatgtatctagggaagggatgatttgcacaagaattaatatcatgagag Alignment from Spaln_nt2Genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttgacttaacagtctgaacatacagtaaatgctttctttccacaacagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTACAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACTGCTATGTCCTCAGTGCTTGCCAAAGCACTAGGAATTATTAGGCCTGCACACATTTTGgtatgtatctagggaagggatgatttgcacaagaattaatatcatgagag Alignment from Pairagon GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttgacttaacagtctgaacatacagtaaatgctttctttccacaacagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTACAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACTGCTATGTCCTCAGTGCTTGCCAAAGCACTAGGAATTATTAGGCCTGCACACATTTTGgtatgtatctagggaagggatgatttgcacaagaattaatatcatgagag Alignment from Exonerate_protein2genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttgacttaacagtctgaacatacagtaaatgctttctttccacaacagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTACAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACTGCTATGTCCTCAGTGCTTGCCAAAGCACTAGGAATTATTAGGCCTGCACACATTTTGgtatgtatctagggaagggatgatttgcacaagaattaatatcatgagag Alignment from Exonerate_coding2genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttgacttaacagtctgaacatacagtaaatgctttctttccacaacagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTACAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACTGCTATGTCCTCAGTGCTTGCCAAAGCACTAGGAATTATTAGGCCTGCACACATTTTGgtatgtatctagggaagggatgatttgcacaagaattaatatcatgagag Alignment from GeneWise GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttgacttaacagtctgaacatacagtaaatgctttctttccacaacagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTACAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACTGCTATGTCCTCAGTGCTTGCCAAAGCACTAGGAATTATTAGGCCTGCACACATTTTGgtatgtatctagggaagggatgatttgcacaagaattaatatcatgagag #### Eif3a_ID13321_9 --> 0 - 0 Original Alignment GTATTAAATTGGGTTAGGGAACAACCTGAAAAAGAACCAGAATTGCAACAATATGTACCACAACTCCAGAACAATACCATACTCCGCCTTCTGCAACAG cactgtatgtggggtagatataagtttcctcttcttcctaccactgccagGTCTTAAATTGGGTTAGAGAACAACCTGAAAAGGAACCAGAGTTGCACCAATTTGTTCCACAAGTCCAGAACAATACTATCCTTCGCCTTCTGCAACAGgttggaatgtggatagtaaaatgtctagcatttaaacccttaaatgtagg Alignment from CESAR GTATTAAATTGGGTTAGGGAACAACCTGAAAAAGAACCAGAATTGCAACAATATGTACCACAACTCCAGAACAATACCATACTCCGCCTTCTGCAACAG cactgtatgtggggtagatataagtttcctcttcttcctaccactgccagGTCTTAAATTGGGTTAGAGAACAACCTGAAAAGGAACCAGAGTTGCACCAATTTGTTCCACAAGTCCAGAACAATACTATCCTTCGCCTTCTGCAACAGgttggaatgtggatagtaaaatgtctagcatttaaacccttaaatgtagg Alignment from Spaln_aa2Genome GTATTAAATTGGGTTAGGGAACAACCTGAAAAAGAACCAGAATTGCAACAATATGTACCACAACTCCAGAACAATACCATACTCCGCCTTCTGCAACAG cactgtatgtggggtagatataagtttcctcttcttcctaccactgccagGTCTTAAATTGGGTTAGAGAACAACCTGAAAAGGAACCAGAGTTGCACCAATTTGTTCCACAAGTCCAGAACAATACTATCCTTCGCCTTCTGCAACAGgttggaatgtggatagtaaaatgtctagcatttaaacccttaaatgtagg Alignment from Spaln_nt2Genome GTATTAAATTGGGTTAGGGAACAACCTGAAAAAGAACCAGAATTGCAACAATATGTACCACAACTCCAGAACAATACCATACTCCGCCTTCTGCAACAG cactgtatgtggggtagatataagtttcctcttcttcctaccactgccagGTCTTAAATTGGGTTAGAGAACAACCTGAAAAGGAACCAGAGTTGCACCAATTTGTTCCACAAGTCCAGAACAATACTATCCTTCGCCTTCTGCAACAGgttggaatgtggatagtaaaatgtctagcatttaaacccttaaatgtagg Alignment from Pairagon GTATTAAATTGGGTTAGGGAACAACCTGAAAAAGAACCAGAATTGCAACAATATGTACCACAACTCCAGAACAATACCATACTCCGCCTTCTGCAACAG cactgtatgtggggtagatataagtttcctcttcttcctaccactgccagGTCTTAAATTGGGTTAGAGAACAACCTGAAAAGGAACCAGAGTTGCACCAATTTGTTCCACAAGTCCAGAACAATACTATCCTTCGCCTTCTGCAACAGgttggaatgtggatagtaaaatgtctagcatttaaacccttaaatgtagg Alignment from Exonerate_protein2genome GTATTAAATTGGGTTAGGGAACAACCTGAAAAAGAACCAGAATTGCAACAATATGTACCACAACTCCAGAACAATACCATACTCCGCCTTCTGCAACAG cactgtatgtggggtagatataagtttcctcttcttcctaccactgccagGTCTTAAATTGGGTTAGAGAACAACCTGAAAAGGAACCAGAGTTGCACCAATTTGTTCCACAAGTCCAGAACAATACTATCCTTCGCCTTCTGCAACAGgttggaatgtggatagtaaaatgtctagcatttaaacccttaaatgtagg Alignment from Exonerate_coding2genome GTATTAAATTGGGTTAGGGAACAACCTGAAAAAGAACCAGAATTGCAACAATATGTACCACAACTCCAGAACAATACCATACTCCGCCTTCTGCAACAG cactgtatgtggggtagatataagtttcctcttcttcctaccactgccagGTCTTAAATTGGGTTAGAGAACAACCTGAAAAGGAACCAGAGTTGCACCAATTTGTTCCACAAGTCCAGAACAATACTATCCTTCGCCTTCTGCAACAGgttggaatgtggatagtaaaatgtctagcatttaaacccttaaatgtagg Alignment from GeneWise GTATTAAATTGGGTTAGGGAACAACCTGAAAAAGAACCAGAATTGCAACAATATGTACCACAACTCCAGAACAATACCATACTCCGCCTTCTGCAACAG cactgtatgtggggtagatataagtttcctcttcttcctaccactgccagGTCTTAAATTGGGTTAGAGAACAACCTGAAAAGGAACCAGAGTTGCACCAATTTGTTCCACAAGTCCAGAACAATACTATCCTTCGCCTTCTGCAACAGgttggaatgtggatagtaaaatgtctagcatttaaacccttaaatgtagg #### Eif3a_ID13322_8 --> 0 - 0 Original Alignment GTCAGGTTCAGTGTGCTACAGTATGTTGTCCCAGAAGTGAAAGACCTTTACAACTGGTTGGAGGTGGAATTCAACCCACTAAAACTCTGTGAGAGAGTTACAAAG tgccccttttaacaatgaacttttctgcagaaatgctctctttccattagGTCAGGTTCAGTGTACTGCAGTACATTGTTCCAGAAGTGAAAGAACTTTACAACTGGCTGGAGGTAGAACTCAACCCTCTAAGAATCTGTGAGAGAGTTACAAAGgtaccaagggacatacaccattccctgtttagatggctgtctacatagca Alignment from CESAR GTCAGGTTCAGTGTGCTACAGTATGTTGTCCCAGAAGTGAAAGACCTTTACAACTGGTTGGAGGTGGAATTCAACCCACTAAAACTCTGTGAGAGAGTTACAAAG tgccccttttaacaatgaacttttctgcagaaatgctctctttccattagGTCAGGTTCAGTGTACTGCAGTACATTGTTCCAGAAGTGAAAGAACTTTACAACTGGCTGGAGGTAGAACTCAACCCTCTAAGAATCTGTGAGAGAGTTACAAAGgtaccaagggacatacaccattccctgtttagatggctgtctacatagca Alignment from Spaln_aa2Genome GTCAGGTTCAGTGTGCTACAGTATGTTGTCCCAGAAGTGAAAGACCTTTACAACTGGTTGGAGGTGGAATTCAACCCACTAAAACTCTGTGAGAGAGTTACAAAG tgccccttttaacaatgaacttttctgcagaaatgctctctttccattagGTCAGGTTCAGTGTACTGCAGTACATTGTTCCAGAAGTGAAAGAACTTTACAACTGGCTGGAGGTAGAACTCAACCCTCTAAGAATCTGTGAGAGAGTTACAAAGgtaccaagggacatacaccattccctgtttagatggctgtctacatagca Alignment from Spaln_nt2Genome GTCAGGTTCAGTGTGCTACAGTATGTTGTCCCAGAAGTGAAAGACCTTTACAACTGGTTGGAGGTGGAATTCAACCCACTAAAACTCTGTGAGAGAGTTACAAAG tgccccttttaacaatgaacttttctgcagaaatgctctctttccattagGTCAGGTTCAGTGTACTGCAGTACATTGTTCCAGAAGTGAAAGAACTTTACAACTGGCTGGAGGTAGAACTCAACCCTCTAAGAATCTGTGAGAGAGTTACAAAGgtaccaagggacatacaccattccctgtttagatggctgtctacatagca Alignment from Pairagon GTCAGGTTCAGTGTGCTACAGTATGTTGTCCCAGAAGTGAAAGACCTTTACAACTGGTTGGAGGTGGAATTCAACCCACTAAAACTCTGTGAGAGAGTTACAAAG tgccccttttaacaatgaacttttctgcagaaatgctctctttccattagGTCAGGTTCAGTGTACTGCAGTACATTGTTCCAGAAGTGAAAGAACTTTACAACTGGCTGGAGGTAGAACTCAACCCTCTAAGAATCTGTGAGAGAGTTACAAAGgtaccaagggacatacaccattccctgtttagatggctgtctacatagca Alignment from Exonerate_protein2genome GTCAGGTTCAGTGTGCTACAGTATGTTGTCCCAGAAGTGAAAGACCTTTACAACTGGTTGGAGGTGGAATTCAACCCACTAAAACTCTGTGAGAGAGTTACAAAG tgccccttttaacaatgaacttttctgcagaaatgctctctttccattagGTCAGGTTCAGTGTACTGCAGTACATTGTTCCAGAAGTGAAAGAACTTTACAACTGGCTGGAGGTAGAACTCAACCCTCTAAGAATCTGTGAGAGAGTTACAAAGgtaccaagggacatacaccattccctgtttagatggctgtctacatagca Alignment from Exonerate_coding2genome GTCAGGTTCAGTGTGCTACAGTATGTTGTCCCAGAAGTGAAAGACCTTTACAACTGGTTGGAGGTGGAATTCAACCCACTAAAACTCTGTGAGAGAGTTACAAAG tgccccttttaacaatgaacttttctgcagaaatgctctctttccattagGTCAGGTTCAGTGTACTGCAGTACATTGTTCCAGAAGTGAAAGAACTTTACAACTGGCTGGAGGTAGAACTCAACCCTCTAAGAATCTGTGAGAGAGTTACAAAGgtaccaagggacatacaccattccctgtttagatggctgtctacatagca Alignment from GeneWise GTCAGGTTCAGTGTGCTACAGTATGTTGTCCCAGAAGTGAAAGACCTTTACAACTGGTTGGAGGTGGAATTCAACCCACTAAAACTCTGTGAGAGAGTTACAAAG tgccccttttaacaatgaacttttctgcagaaatgctctctttccattagGTCAGGTTCAGTGTACTGCAGTACATTGTTCCAGAAGTGAAAGAACTTTACAACTGGCTGGAGGTAGAACTCAACCCTCTAAGAATCTGTGAGAGAGTTACAAAGgtaccaagggacatacaccattccctgtttagatggctgtctacatagca #### Eif3a_ID13325_5 --> 2 - 0 Original Alignment ctTTCAAATTCTGCCTCCAGTATACTCGGAAGGCTGAGTTCCGCAAGCTATGTGACAACTTGCGAATGCACTTATCCCAGATTCAGCGCCACCATAACCAAAGCACAGCAATTAATCTTAATAATCCAGAGAGCCAGTCTATGCATTTGGAAACCAGACTTGTTCAGTTGGACAGTGCTATCAGCATGGAATTATGGCAG tacctgggagttattaaaaattagaccaagcctctggattctgctcacagctTTCAAATTTTGCTTGCAGCATACTCGTAAGGCAGAGTACCGCAAGTTATGTGATAATCTGCAAATGCACCTATCACAGATTCAGCATCATCATAATCAAAGCACAGCAATTAATCTTAATAATCCAGAAAGCCAATCCATGTGTCTGGAAACCAGACTAGTTCAGTTGGACAGTGCTATAAGCATGGAGTTATGGCATgtaagtctaactagtaggctaagattttcacctttcttgtatcttaatat Alignment from CESAR ctTTCAAATTCTGCCTCCAGTATACTCGGAAGGCTGAGTTCCGCAAGCTATGTGACAACTTGCGAATGCACTTATCCCAGATTCAGCGCCACCATAACCAAAGCACAGCAATTAATCTTAATAATCCAGAGAGCCAGTCTATGCATTTGGAAACCAGACTTGTTCAGTTGGACAGTGCTATCAGCATGGAATTATGGCAG tacctgggagttattaaaaattagaccaagcctctggattctgctcacagctTTCAAATTTTGCTTGCAGCATACTCGTAAGGCAGAGTACCGCAAGTTATGTGATAATCTGCAAATGCACCTATCACAGATTCAGCATCATCATAATCAAAGCACAGCAATTAATCTTAATAATCCAGAAAGCCAATCCATGTGTCTGGAAACCAGACTAGTTCAGTTGGACAGTGCTATAAGCATGGAGTTATGGCATgtaagtctaactagtaggctaagattttcacctttcttgtatcttaatat Alignment from Spaln_aa2Genome CTTTCAAATTCTGCCTCCAGTATACTCGGAAGGCTGAGTTCCGCAAGCTATGTGACAACTTGCGAATGCACTTATCCCAGATTCAGCGCCACCATAACCAAAGCACAGCAATTAATCTTAATAATCCAGAGAGCCAGTCTATGCATTTGGAAACCAGACTTGTTCAGTTGGACAGTGCTATCAGCATGGAATTATGGCAG tacctgggagttattaaaaattagaccaagcctctggattctgctcacagCTTTCAAATTTTGCTTGCAGCATACTCGTAAGGCAGAGTACCGCAAGTTATGTGATAATCTGCAAATGCACCTATCACAGATTCAGCATCATCATAATCAAAGCACAGCAATTAATCTTAATAATCCAGAAAGCCAATCCATGTGTCTGGAAACCAGACTAGTTCAGTTGGACAGTGCTATAAGCATGGAGTTATGGCATgtaagtctaactagtaggctaagattttcacctttcttgtatcttaatat Alignment from Spaln_nt2Genome CTTTCAAATTCTGCCTCCAGTATACTCGGAAGGCTGAGTTCCGCAAGCTATGTGACAACTTGCGAATGCACTTATCCCAGATTCAGCGCCACCATAACCAAAGCACAGCAATTAATCTTAATAATCCAGAGAGCCAGTCTATGCATTTGGAAACCAGACTTGTTCAGTTGGACAGTGCTATCAGCATGGAATTATGGCAG tacctgggagttattaaaaattagaccaagcctctggattctgctcacagCTTTCAAATTTTGCTTGCAGCATACTCGTAAGGCAGAGTACCGCAAGTTATGTGATAATCTGCAAATGCACCTATCACAGATTCAGCATCATCATAATCAAAGCACAGCAATTAATCTTAATAATCCAGAAAGCCAATCCATGTGTCTGGAAACCAGACTAGTTCAGTTGGACAGTGCTATAAGCATGGAGTTATGGCATgtaagtctaactagtaggctaagattttcacctttcttgtatcttaatat Alignment from Pairagon CTTTCAAATTCTGCCTCCAGTATACTCGGAAGGCTGAGTTCCGCAAGCTATGTGACAACTTGCGAATGCACTTATCCCAGATTCAGCGCCACCATAACCAAAGCACAGCAATTAATCTTAATAATCCAGAGAGCCAGTCTATGCATTTGGAAACCAGACTTGTTCAGTTGGACAGTGCTATCAGCATGGAATTATGGCAG tacctgggagttattaaaaattagaccaagcctctggattctgctcacagCTTTCAAATTTTGCTTGCAGCATACTCGTAAGGCAGAGTACCGCAAGTTATGTGATAATCTGCAAATGCACCTATCACAGATTCAGCATCATCATAATCAAAGCACAGCAATTAATCTTAATAATCCAGAAAGCCAATCCATGTGTCTGGAAACCAGACTAGTTCAGTTGGACAGTGCTATAAGCATGGAGTTATGGCATgtaagtctaactagtaggctaagattttcacctttcttgtatcttaatat Alignment from Exonerate_protein2genome CTTTCAAATTCTGCCTCCAGTATACTCGGAAGGCTGAGTTCCGCAAGCTATGTGACAACTTGCGAATGCACTTATCCCAGATTCAGCGCCACCATAACCAAAGCACAGCAATTAATCTTAATAATCCAGAGAGCCAGTCTATGCATTTGGAAACCAGACTTGTTCAGTTGGACAGTGCTATCAGCATGGAATTATGGCAG tacctgggagttattaaaaattagaccaagcctctggattctgctcacagCTTTCAAATTTTGCTTGCAGCATACTCGTAAGGCAGAGTACCGCAAGTTATGTGATAATCTGCAAATGCACCTATCACAGATTCAGCATCATCATAATCAAAGCACAGCAATTAATCTTAATAATCCAGAAAGCCAATCCATGTGTCTGGAAACCAGACTAGTTCAGTTGGACAGTGCTATAAGCATGGAGTTATGGCATgtaagtctaactagtaggctaagattttcacctttcttgtatcttaatat Alignment from Exonerate_coding2genome CTTTCAAATTCTGCCTCCAGTATACTCGGAAGGCTGAGTTCCGCAAGCTATGTGACAACTTGCGAATGCACTTATCCCAGATTCAGCGCCACCATAACCAAAGCACAGCAATTAATCTTAATAATCCAGAGAGCCAGTCTATGCATTTGGAAACCAGACTTGTTCAGTTGGACAGTGCTATCAGCATGGAATTATGGCAG tacctgggagttattaaaaattagaccaagcctctggattctgctcacagCTTTCAAATTTTGCTTGCAGCATACTCGTAAGGCAGAGTACCGCAAGTTATGTGATAATCTGCAAATGCACCTATCACAGATTCAGCATCATCATAATCAAAGCACAGCAATTAATCTTAATAATCCAGAAAGCCAATCCATGTGTCTGGAAACCAGACTAGTTCAGTTGGACAGTGCTATAAGCATGGAGTTATGGCATgtaagtctaactagtaggctaagattttcacctttcttgtatcttaatat Alignment from GeneWise CTTTCAAATTCTGCCTCCAGTATACTCGGAAGGCTGAGTTCCGCAAGCTATGTGACAACTTGCGAATGCACTTATCCCAGATTCAGCGCCACCATAACCAAAGCACAGCAATTAATCTTAATAATCCAGAGAGCCAGTCTATGCATTTGGAAACCAGACTTGTTCAGTTGGACAGTGCTATCAGCATGGAATTATGGCAG tacctgggagttattaaaaattagaccaagcctctggattctgctcacagCTTTCAAATTTTGCTTGCAGCATACTCGTAAGGCAGAGTACCGCAAGTTATGTGATAATCTGCAAATGCACCTATCACAGATTCAGCATCATCATAATCAAAGCACAGCAATTAATCTTAATAATCCAGAAAGCCAATCCATGTGTCTGGAAACCAGACTAGTTCAGTTGGACAGTGCTATAAGCATGGAGTTATGGCATgtaagtctaactagtaggctaagattttcacctttcttgtatcttaatat #### Elovl3_ID9745_2 --> 1 - 2 Original Alignment gGTAAGCTCATTTCTCATAGTGGTCGTCTATCTGTTGCTCATCGTTGTTGGCCAGACCTACATGAGAACGCGGAAGAGCTTCAGCTTGCAGAGGCCTCTCATCCTCTGGTCCTTCTTCCTGGCAATATTCag aggtattcttttaagtagtgtctttgggaaccttgttccttgtgttacaggACA------GTTCTCATAGTAATTGTATATCTATTACTTATAATTGTTGGCCAGACTTACACAAGAATGCAAAAAAGCTACAGTTTACGGAGACCCATAATCCTCTGGTCATTT---TTGCCAATGTTCaggtaaggcagcgttccagtagtcatgttactcaattctgatcatttctctt Alignment from CESAR gGTAAGCTCATTTCTCATAGTGGTCGTCTATCTGTTGCTCATCGTTGTTGGCCAGACCTACATGAGAACGCGGAAGAGCTTCAGCTTGCAGAGGCCTCTCATCCTCTGGTCCTTCTTCCTGGCAATATTCag aggtattcttttaagtagtgtctttgggaaccttgttccttgtgttacagg------ACAGTTCTCATAGTAATTGTATATCTATTACTTATAATTGTTGGCCAGACTTACACAAGAATGCAAAAAAGCTACAGTTTACGGAGACCCATAATCCTCTGGTCA---TTTTTGCCAATGTTCaggtaaggcagcgttccagtagtcatgttactcaattctgatcatttctctt Alignment from Spaln_aa2Genome GGTAAGCTCATTTCTCATAGTGGTCGTCTATCTGTTGCTCATCGTTGTTGGCCAGACCTACATGAGAACGCGGAAGAGCTTCAGCTTGCAGAGGCCTCTCATCCTCTGGTCCTTCTTCCTGGCAATATTCAG aggtattcttttaagtagtgtctttgggaaccttgttccttgtgttacagG------ACAGTTCTCATAGTAATTGTATATCTATTACTTATAATTGTTGGCCAGACTTACACAAGAATGCAAAAAAGCTACAGTTTACGGAGACCCATAATCCTCTGGTCA---TTTTTGCCAATGTTCAGgtaaggcagcgttccagtagtcatgttactcaattctgatcatttctctt Alignment from Spaln_nt2Genome AG CTCATTTCTCATAGTGGTCGTCTATCTGTTGCTCATCGTTGTTGGCCAGACCTACATGAGAACGCGGAAGAGCTTCAGCTTGCAGAGGCCTCTCATCCTCTGGTCCTTCTTCCTGGCAATATTCAG AGgtattcttttaagtagtgtctttgggaaccttgttccttgtgttacagGACAGTTCTCATAGTAATTGTATATCTATTACTTATAATTGTTGGCCAGACTTACACAAGAATGCAAAAAAGCTACAGTTTACGGAGACCCATAATCCTCTGGTCATTTT---TGCCAATGTTCAGgtaaggcagcgttccagtagtcatgttactcaattctgatcatttctctt Alignment from Pairagon GGTAAGCTCATTTCTCATAGTGGTCGTCTATCTGTTGCTCATCGTTGTTGGCCAGACCTACATGAGAACGCGGAAGAGCTTCAGCTTGCAGAGGCCTCTCATCCTCTGGTCCTTCTTCCTGGCAATATTCAG aggtattcttttaagtagtgtctttgggaaccttgttccttgtgttacaggacag-----------TTCTCATAGTAATTGTATATCTATTACTTATAATTGTTGGCCAGACTTACACAAGAATGCAAAAAAGCTACAGTTTACGGAGACCCATAATCCTCTGGTCATTTTTGC---CAATGTTCAGgtaaggcagcgttccagtagtcatgttactcaattctgatcatttctctt Alignment from Exonerate_protein2genome GGTAAGCTCATTTCTCATAGTGGTCGTCTATCTGTTGCTCATCGTTGTTGGCCAGACCTACATGAGAACGCGGAAGAGCTTCAGCTTGCAGAGGCCTCTCATCCTCTGGTCCTTCTTCCTGGCAATATTCAG aggtattcttttaagtagtgtctttgggaaccttgttccttgtgttacagG------ACAGTTCTCATAGTAATTGTATATCTATTACTTATAATTGTTGGCCAGACTTACACAAGAATGCAAAAAAGCTACAGTTTACGGAGACCCATAATCCTCTGGTCA---TTTTTGCCAATGTTCAGgtaaggcagcgttccagtagtcatgttactcaattctgatcatttctctt Alignment from Exonerate_coding2genome aggtattcttttaagtagtgtctttgggaaccttgttccttgtgttacaggacagttctcatagtaattgtatatctattacttataattgttggccagacttacacaagaatgcaaaaaagctacagtttacggagacccataatcctctggtcatttttgccaatgttcaggtaaggcagcgttccagtagtcatgttactcaattctgatcatttctctt Alignment from GeneWise GGTAAGCTCATTTCTCATAGTGGTCGTCTATCTGTTGCTCATCGTTGTTGGCCAGACCTACATGAGAACGCGGAAGAGCTTCAGCTTGCAGAGGCCTCTCATCCTCTGGTCCTTCTTCCTGGCAATATTCAG aggtattcttttaagtagtgtctttgggaaccttgttccttgtgttacagG------ACAGTTCTCATAGTAATTGTATATCTATTACTTATAATTGTTGGCCAGACTTACACAAGAATGCAAAAAAGCTACAGTTTACGGAGACCCATAATCCTCTGGTCATTT---TTGCCAATGTTCAGgtaaggcagcgttccagtagtcatgttactcaattctgatcatttctctt #### Eml3_ID2512_11 --> 0 - 0 Original Alignment AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG aaggcctgcacttgcctcagtgtgagtacctctctctctggtcacttcagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCGGAAAATCACATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCACGGAAGCAGGGTGTTCTTGGGgtaagttgggtaaggtcaccaaaggcactgcatactcattataacacacc Alignment from CESAR AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG aaggcctgcacttgcctcagtgtgagtacctctctctctggtcacttcagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCGGAAAATCACATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCACGGAAGCAGGGTGTTCTTGGGgtaagttgggtaaggtcaccaaaggcactgcatactcattataacacacc Alignment from Spaln_aa2Genome AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG aaggcctgcacttgcctcagtgtgagtacctctctctctggtcacttcagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCGGAAAATCACATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCACGGAAGCAGGGTGTTCTTGGGgtaagttgggtaaggtcaccaaaggcactgcatactcattataacacacc Alignment from Spaln_nt2Genome AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG aaggcctgcacttgcctcagtgtgagtacctctctctctggtcacttcagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCGGAAAATCACATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCACGGAAGCAGGGTGTTCTTGGGgtaagttgggtaaggtcaccaaaggcactgcatactcattataacacacc Alignment from Pairagon AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG aaggcctgcacttgcctcagtgtgagtacctctctctctggtcacttcagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCGGAAAATCACATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCACGGAAGCAGGGTGTTCTTGGGgtaagttgggtaaggtcaccaaaggcactgcatactcattataacacacc Alignment from Exonerate_protein2genome AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG aaggcctgcacttgcctcagtgtgagtacctctctctctggtcacttcagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCGGAAAATCACATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCACGGAAGCAGGGTGTTCTTGGGgtaagttgggtaaggtcaccaaaggcactgcatactcattataacacacc Alignment from Exonerate_coding2genome AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG aaggcctgcacttgcctcagtgtgagtacctctctctctggtcacttcagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCGGAAAATCACATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCACGGAAGCAGGGTGTTCTTGGGgtaagttgggtaaggtcaccaaaggcactgcatactcattataacacacc Alignment from GeneWise AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG aaggcctgcacttgcctcagtgtgagtacctctctctctggtcacttcagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCGGAAAATCACATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCACGGAAGCAGGGTGTTCTTGGGgtaagttgggtaaggtcaccaaaggcactgcatactcattataacacacc #### Eml3_ID2518_17 --> 1 - 1 Original Alignment gTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAg aagtgtaaggcaaaatcttttctctatggattgaacttcctcaattccaggTGGTTGGTCTTGGACACCGAGACCAGGGAAATTGTGTCTGATGTCACGGATGGCAATGAGCAACTCTCAGTTGTCCGGTACAGCCCAggtgaggatgcttccccttgcctgaatcctgccctgagtcgtggcttgttc Alignment from CESAR gTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAg aagtgtaaggcaaaatcttttctctatggattgaacttcctcaattccaggTGGTTGGTCTTGGACACCGAGACCAGGGAAATTGTGTCTGATGTCACGGATGGCAATGAGCAACTCTCAGTTGTCCGGTACAGCCCAggtgaggatgcttccccttgcctgaatcctgccctgagtcgtggcttgttc Alignment from Spaln_aa2Genome GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aagtgtaaggcaaaatcttttctctatggattgaacttcctcaattccagGTGGTTGGTCTTGGACACCGAGACCAGGGAAATTGTGTCTGATGTCACGGATGGCAATGAGCAACTCTCAGTTGTCCGGTACAGCCCAGgtgaggatgcttccccttgcctgaatcctgccctgagtcgtggcttgttc Alignment from Spaln_nt2Genome GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aagtgtaaggcaaaatcttttctctatggattgaacttcctcaattccagGTGGTTGGTCTTGGACACCGAGACCAGGGAAATTGTGTCTGATGTCACGGATGGCAATGAGCAACTCTCAGTTGTCCGGTACAGCCCAGgtgaggatgcttccccttgcctgaatcctgccctgagtcgtggcttgttc Alignment from Pairagon GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aagtgtaaggcaaaatcttttctctatggattgaacttcctcaattccagGTGGTTGGTCTTGGACACCGAGACCAGGGAAATTGTGTCTGATGTCACGGATGGCAATGAGCAACTCTCAGTTGTCCGGTACAGCCCAGgtgaggatgcttccccttgcctgaatcctgccctgagtcgtggcttgttc Alignment from Exonerate_protein2genome GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aagtgtaaggcaaaatcttttctctatggattgaacttcctcaattccagGTGGTTGGTCTTGGACACCGAGACCAGGGAAATTGTGTCTGATGTCACGGATGGCAATGAGCAACTCTCAGTTGTCCGGTACAGCCCAGgtgaggatgcttccccttgcctgaatcctgccctgagtcgtggcttgttc Alignment from Exonerate_coding2genome GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aagtgtaaggcaaaatcttttctctatggattgaacttcctcaattccagGTGGTTGGTCTTGGACACCGAGACCAGGGAAATTGTGTCTGATGTCACGGATGGCAATGAGCAACTCTCAGTTGTCCGGTACAGCCCAGgtgaggatgcttccccttgcctgaatcctgccctgagtcgtggcttgttc Alignment from GeneWise GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGACGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aagtgtaaggcaaaatcttttctctatggattgaacttcctcaattccagGTGGTTGGTCTTGGACACCGAGACCAGGGAAATTGTGTCTGATGTCACGGATGGCAATGAGCAACTCTCAGTTGTCCGGTACAGCCCAGgtgaggatgcttccccttgcctgaatcctgccctgagtcgtggcttgttc #### Eno4_ID12834_6 --> 0 - 0 Original Alignment GAGCAGCCGTCAACATTCTCTATGCCTTTGCTGATGGGATCTGTACTGAGCTGTGGGAAGTCGTCACCTGGGAAGCTACATTTAATGAAAGAAGTGATTTGTATTCCCAGTCCTGGATTAACAGCCAAACAA gatagagctctcaggaggcgtttgcctgagtgaccctgtgtgtgttctagGAGCAACCATCAGCATACTCTATGCCATTGTTGATGGGATCCATACTGAGTTGCGGTAAGTCTTCCCCTGGGCGACTACATTTGATGAAAGGGGTAATTTGCATTCCTAGTCCTGGGTTAACAGCTAAACAGgtatgagatatggaaaccctgcctacaaccagacatacagtcacaccgca Alignment from CESAR GAGCAGCCGTCAACATTCTCTATGCCTTTGCTGATGGGATCTGTACTGAGCTGTGGGAAGTCGTCACCTGGGAAGCTACATTTAATGAAAGAAGTGATTTGTATTCCCAGTCCTGGATTAACAGCCAAACAA gatagagctctcaggaggcgtttgcctgagtgaccctgtgtgtgttctagGAGCAACCATCAGCATACTCTATGCCATTGTTGATGGGATCCATACTGAGTTGCGGTAAGTCTTCCCCTGGGCGACTACATTTGATGAAAGGGGTAATTTGCATTCCTAGTCCTGGGTTAACAGCTAAACAGgtatgagatatggaaaccctgcctacaaccagacatacagtcacaccgca Alignment from Spaln_aa2Genome GAGCAGCCGTCAACATTCTCTATGCCTTTGCTGATGGGATCTGTACTGAGCTGTGGGAAGTCGTCACCTGGGAAGCTACATTTAATGAAAGAAGTGATTTGTATTCCCAGTCCTGGATTAACAGCCAAACAA gatagagctctcaggaggcgtttgcctgagtgaccctgtgtgtgttctagGAGCAACCATCAGCATACTCTATGCCATTGTTGATGGGATCCATACTGAGTTGCGGTAAGTCTTCCCCTGGGCGACTACATTTGATGAAAGGGGTAATTTGCATTCCTAGTCCTGGGTTAACAGCTAAACAGgtatgagatatggaaaccctgcctacaaccagacatacagtcacaccgca Alignment from Spaln_nt2Genome GAGCAGCCGTCAACATTCTCTATGCCTTTGCTGATGGGATCTGTACTGAGCTGTGGGAAGTCGTCACCTGGGAAGCTACATTTAATGAAAGAAGTGATTTGTATTCCCAGTCCTGGATTAACAGCCAAACAA gatagagctctcaggaggcgtttgcctgagtgaccctgtgtgtgttctagGAGCAACCATCAGCATACTCTATGCCATTGTTGATGGGATCCATACTGAGTTGCGGTAAGTCTTCCCCTGGGCGACTACATTTGATGAAAGGGGTAATTTGCATTCCTAGTCCTGGGTTAACAGCTAAACAGgtatgagatatggaaaccctgcctacaaccagacatacagtcacaccgca Alignment from Pairagon GAGCAGCCGTCAACATTCTCTATGCCTTTGCTGATGGGATCTGTACTGAGCTGTGGGAAGTCGTCACCTGGGAAGCTACATTTAATGAAAGAAGTGATTTGTATTCCCAGTCCTGGATTAACAGCCAAACAA gatagagctctcaggaggcgtttgcctgagtgaccctgtgtgtgttctagGAGCAACCATCAGCATACTCTATGCCATTGTTGATGGGATCCATACTGAGTTGCGGTAAGTCTTCCCCTGGGCGACTACATTTGATGAAAGGGGTAATTTGCATTCCTAGTCCTGGGTTAACAGCTAAACAGgtatgagatatggaaaccctgcctacaaccagacatacagtcacaccgca Alignment from Exonerate_protein2genome GAGCAGCCGTCAACATTCTCTATGCCTTTGCTGATGGGATCTGTACTGAGCTGTGGGAAGTCGTCACCTGGGAAGCTACATTTAATGAAAGAAGTGATTTGTATTCCCAGTCCTGGATTAACAGCCAAACAA gatagagctctcaggaggcgtttgcctgagtgaccctgtgtgtgttctagGAGCAACCATCAGCATACTCTATGCCATTGTTGATGGGATCCATACTGAGTTGCGGTAAGTCTTCCCCTGGGCGACTACATTTGATGAAAGGGGTAATTTGCATTCCTAGTCCTGGGTTAACAGCTAAACAGgtatgagatatggaaaccctgcctacaaccagacatacagtcacaccgca Alignment from Exonerate_coding2genome GAGCAGCCGTCAACATTCTCTATGCCTTTGCTGATGGGATCTGTACTGAGCTGTGGGAAGTCGTCACCTGGGAAGCTACATTTAATGAAAGAAGTGATTTGTATTCCCAGTCCTGGATTAACAGCCAAACAAAGTGTCGAGTT gatagagctctcaggaggcgtttgcctgagtgaccctgtgtgtgttctagGAGCAACCATCAGCATACTCTATGCCATTGTTGATGGGATCCATACTGAGTTGCGGTAAGTCTTCCCCTGGGCGACTACATTTGATGAAAGGGGTAATTTGCATTCCTAGTCCTGGGTTAACAGCTAAACAGGTATGAGATATggaaaccctgcctacaaccagacatacagtcacaccgca Alignment from GeneWise GAGCAGCCGTCAACATTCTCTATGCCTTTGCTGATGGGATCTGTACTGAGCTGTGGGAAGTCGTCACCTGGGAAGCTACATTTAATGAAAGAAGTGATTTGTATTCCCAGTCCTGGATTAACAGCCAAACAA gatagagctctcaggaggcgtttgcctgagtgaccctgtgtgtgttctagGAGCAACCATCAGCATACTCTATGCCATTGTTGATGGGATCCATACTGAGTTGCGGTAAGTCTTCCCCTGGGCGACTACATTTGATGAAAGGGGTAATTTGCATTCCTAGTCCTGGGTTAACAGCTAAACAGgtatgagatatggaaaccctgcctacaaccagacatacagtcacaccgca #### Eno4_ID12835_7 --> 0 - 0 Original Alignment AGTGTCGAGTTGCTTCTGGAAATTCAGAAACAAGTTAACAGAGCGATGGAGACG aaactcccaggtgtgagttgaatgagggatgtatttttcttcccattcagAGTGTCGAGTTGCTT---CAAATTCAAAAGCAAGTGAATAGAGCAAAGAAGACAgtatgtaaagaagactctgtgtaatttgaccctcaaaaccaccatgaacc Alignment from CESAR AGTGTCGAGTTGCTTCTGGAAATTCAGAAACAAGTTAACAGAGCGATGGAGACG aaactcccaggtgtgagttgaatgagggatgtatttttcttcccattcagAGTGTCGAGTTGCTT---CAAATTCAAAAGCAAGTGAATAGAGCAAAGAAGACAgtatgtaaagaagactctgtgtaatttgaccctcaaaaccaccatgaacc Alignment from Spaln_aa2Genome AGTGTCGAGTTGCTTCTGGAAATTCAGAAACAAGTTAACAGAGCGATGGAGACG aaactcccaggtgtgagttgaatgagggatgtatttttcttcccattcagAGTGTCGAG---TTGCTTCAAATTCAAAAGCAAGTGAATAGAGCAAAGAAGACAgtatgtaaagaagactctgtgtaatttgaccctcaaaaccaccatgaacc Alignment from Spaln_nt2Genome AGTGTCGAGTTGCTTCTGGAAATTCAGAAACAAGTTAACAGAGCGATGGAGACG aaactcccaggtgtgagttgaatgagggatgtatttttcttcccattcagAGTGTCGAGTTGCTTC---AAATTCAAAAGCAAGTGAATAGAGCAAAGAAGACAgtatgtaaagaagactctgtgtaatttgaccctcaaaaccaccatgaacc Alignment from Pairagon AGTGTCGAGTTGCTTCTGGAAATTCAGAAACAAGTTAACAGAGCGATGGAGACG aaactcccaggtgtgagttgaatgagggatgtatttttcttcccattcagAGTGTCGAGTTGCTTC---AAATTCAAAAGCAAGTGAATAGAGCAAAGAAGACAgtatgtaaagaagactctgtgtaatttgaccctcaaaaccaccatgaacc Alignment from Exonerate_protein2genome AGTGTCGAGTTGCTTCTGGAAATTCAGAAACAAGTTAACAGAGCGATGGAGACG aaactcccaggtgtgagttgaatgagggatgtatttttcttcccattcagAGTGTCGAG---TTGCTTCAAATTCAAAAGCAAGTGAATAGAGCAAAGAAGACAgtatgtaaagaagactctgtgtaatttgaccctcaaaaccaccatgaacc Alignment from Exonerate_coding2genome aaactcccaggtgtgagttgaatgagggatgtatttttcttcccattcagagtgtcgagttgcttcaaattcaaaagcaagtgaatagagcaaagaagacagtatgtaaagaagactctgtgtaatttgaccctcaaaaccaccatgaacc Alignment from GeneWise AGTGTCGAGTTGCTTCTGGAAATTCAGAAACAAGTTAACAGAGCGATGGAGACG aaactcccaggtgtgagttgaatgagggatgtatttttcttcccattcagAGTGTCGAGTTGCTT---CAAATTCAAAAGCAAGTGAATAGAGCAAAGAAGACAgtatgtaaagaagactctgtgtaatttgaccctcaaaaccaccatgaacc #### Eno4_ID12837_9 --> 0 - 0 Original Alignment CCACCGATCACTGGCAAGGTATCTCACCTTGGCTGTTTAACCATCAACTACGACGCCATAGAGCAGCCACTGCTGCTGCTTCAGGGGATCTGCTCAAACCTGGGGTTGGAACTGGGAGTGAACTTCCATCTAGCCATCAACTGTGCTGGGCATGAGCTGATGGACTAC gctcaccacgttcaattctatctcatagtttgtccctgctgttcttttagCCACCTATCACAGGTAAAGTGTCTCATGTTGGGTGTTTGACCATCAACTATGATGCCATCGGGCAGCCATTACTGCTGCTACAGGGCATTTGCTCTAACCTGTCATCAGAACTGGGTGTGAACTTCCATCTTGCCGTCAACTGTGCTGGGCATGAGCTCATGGACTATgtgagtctcatgttcaaactgttgatacttcatttttggtactatagtgc Alignment from CESAR CCACCGATCACTGGCAAGGTATCTCACCTTGGCTGTTTAACCATCAACTACGACGCCATAGAGCAGCCACTGCTGCTGCTTCAGGGGATCTGCTCAAACCTGGGGTTGGAACTGGGAGTGAACTTCCATCTAGCCATCAACTGTGCTGGGCATGAGCTGATGGACTAC gctcaccacgttcaattctatctcatagtttgtccctgctgttcttttagCCACCTATCACAGGTAAAGTGTCTCATGTTGGGTGTTTGACCATCAACTATGATGCCATCGGGCAGCCATTACTGCTGCTACAGGGCATTTGCTCTAACCTGTCATCAGAACTGGGTGTGAACTTCCATCTTGCCGTCAACTGTGCTGGGCATGAGCTCATGGACTATgtgagtctcatgttcaaactgttgatacttcatttttggtactatagtgc Alignment from Spaln_aa2Genome CCACCGATCACTGGCAAGGTATCTCACCTTGGCTGTTTAACCATCAACTACGACGCCATAGAGCAGCCACTGCTGCTGCTTCAGGGGATCTGCTCAAACCTGGGGTTGGAACTGGGAGTGAACTTCCATCTAGCCATCAACTGTGCTGGGCATGAGCTGATGGACTAC gctcaccacgttcaattctatctcatagtttgtccctgctgttcttttagCCACCTATCACAGGTAAAGTGTCTCATGTTGGGTGTTTGACCATCAACTATGATGCCATCGGGCAGCCATTACTGCTGCTACAGGGCATTTGCTCTAACCTGTCATCAGAACTGGGTGTGAACTTCCATCTTGCCGTCAACTGTGCTGGGCATGAGCTCATGGACTATgtgagtctcatgttcaaactgttgatacttcatttttggtactatagtgc Alignment from Spaln_nt2Genome CCACCGATCACTGGCAAGGTATCTCACCTTGGCTGTTTAACCATCAACTACGACGCCATAGAGCAGCCACTGCTGCTGCTTCAGGGGATCTGCTCAAACCTGGGGTTGGAACTGGGAGTGAACTTCCATCTAGCCATCAACTGTGCTGGGCATGAGCTGATGGACTAC gctcaccacgttcaattctatctcatagtttgtccctgctgttcttttagCCACCTATCACAGGTAAAGTGTCTCATGTTGGGTGTTTGACCATCAACTATGATGCCATCGGGCAGCCATTACTGCTGCTACAGGGCATTTGCTCTAACCTGTCATCAGAACTGGGTGTGAACTTCCATCTTGCCGTCAACTGTGCTGGGCATGAGCTCATGGACTATgtgagtctcatgttcaaactgttgatacttcatttttggtactatagtgc Alignment from Pairagon CCACCGATCACTGGCAAGGTATCTCACCTTGGCTGTTTAACCATCAACTACGACGCCATAGAGCAGCCACTGCTGCTGCTTCAGGGGATCTGCTCAAACCTGGGGTTGGAACTGGGAGTGAACTTCCATCTAGCCATCAACTGTGCTGGGCATGAGCTGATGGACTAC gctcaccacgttcaattctatctcatagtttgtccctgctgttcttttagCCACCTATCACAGGTAAAGTGTCTCATGTTGGGTGTTTGACCATCAACTATGATGCCATCGGGCAGCCATTACTGCTGCTACAGGGCATTTGCTCTAACCTGTCATCAGAACTGGGTGTGAACTTCCATCTTGCCGTCAACTGTGCTGGGCATGAGCTCATGGACTATgtgagtctcatgttcaaactgttgatacttcatttttggtactatagtgc Alignment from Exonerate_protein2genome CCACCGATCACTGGCAAGGTATCTCACCTTGGCTGTTTAACCATCAACTACGACGCCATAGAGCAGCCACTGCTGCTGCTTCAGGGGATCTGCTCAAACCTGGGGTTGGAACTGGGAGTGAACTTCCATCTAGCCATCAACTGTGCTGGGCATGAGCTGATGGACTAC gctcaccacgttcaattctatctcatagtttgtccctgctgttcttttagCCACCTATCACAGGTAAAGTGTCTCATGTTGGGTGTTTGACCATCAACTATGATGCCATCGGGCAGCCATTACTGCTGCTACAGGGCATTTGCTCTAACCTGTCATCAGAACTGGGTGTGAACTTCCATCTTGCCGTCAACTGTGCTGGGCATGAGCTCATGGACTATgtgagtctcatgttcaaactgttgatacttcatttttggtactatagtgc Alignment from Exonerate_coding2genome CCACCGATCACTGGCAAGGTATCTCACCTTGGCTGTTTAACCATCAACTACGACGCCATAGAGCAGCCACTGCTGCTGCTTCAGGGGATCTGCTCAAACCTGGGGTTGGAACTGGGAGTGAACTTCCATCTAGCCATCAACTGTGCTGGGCATGAGCTGATGGACTAC gctcaccacgttcaattctatctcatagtttgtccctgctgttcttttagccacCT----ATCACAGGTAAAGTGTCTCATGTTGGGTGTTTGACCATCAACTATGATGCCATCGGGCAGCCATTACTGCTGCTACAGGGCATTTGCTCTAACCTGTCATCAGAACTGGGTGTGAACTTCCATCTTGCCGTCAACTGTGCTGGGCATGAGCTCATGGACTATgtgagtctcatgttcaaactgttgatacttcatttttggtactatagtgc Alignment from GeneWise CCACCGATCACTGGCAAGGTATCTCACCTTGGCTGTTTAACCATCAACTACGACGCCATAGAGCAGCCACTGCTGCTGCTTCAGGGGATCTGCTCAAACCTGGGGTTGGAACTGGGAGTGAACTTCCATCTAGCCATCAACTGTGCTGGGCATGAGCTGATGGACTAC gctcaccacgttcaattctatctcatagtttgtccctgctgttcttttagCCACCTATCACAGGTAAAGTGTCTCATGTTGGGTGTTTGACCATCAACTATGATGCCATCGGGCAGCCATTACTGCTGCTACAGGGCATTTGCTCTAACCTGTCATCAGAACTGGGTGTGAACTTCCATCTTGCCGTCAACTGTGCTGGGCATGAGCTCATGGACTATgtgagtctcatgttcaaactgttgatacttcatttttggtactatagtgc #### Eno4_ID12838_10 --> 0 - 0 Original Alignment AGTAAAGGGAAGTACGAAGTGATGGTGGGCACCCACAAAAGCGCAGCTGAGATGGTGGAGCTCTACGTGGACCTGATCAACAAGTATCCTTCCATAATCGCCTTAATTGATCCTTTCAGGAAGGAG gccatctgccaccaacaccaaacttcatccatctcttgtctctcctacagAGCAAAGCAAAATATGAAGTGATGGTGAGCACTCACAAAACCACAGCTGACATGGTTGAGCCCTATGTGGACCTCATCAACAAGTATCCATCCATAATTACTTTGACTGATCCTTTTCGGAGGGAGgtaaggatagcttagcgttgttgacccatgtctacgccaactaaggtaac Alignment from CESAR AGTAAAGGGAAGTACGAAGTGATGGTGGGCACCCACAAAAGCGCAGCTGAGATGGTGGAGCTCTACGTGGACCTGATCAACAAGTATCCTTCCATAATCGCCTTAATTGATCCTTTCAGGAAGGAG gccatctgccaccaacaccaaacttcatccatctcttgtctctcctacagAGCAAAGCAAAATATGAAGTGATGGTGAGCACTCACAAAACCACAGCTGACATGGTTGAGCCCTATGTGGACCTCATCAACAAGTATCCATCCATAATTACTTTGACTGATCCTTTTCGGAGGGAGgtaaggatagcttagcgttgttgacccatgtctacgccaactaaggtaac Alignment from Spaln_aa2Genome AGTAAAGGGAAGTACGAAGTGATGGTGGGCACCCACAAAAGCGCAGCTGAGATGGTGGAGCTCTACGTGGACCTGATCAACAAGTATCCTTCCATAATCGCCTTAATTGATCCTTTCAGGAAGGAG gccatctgccaccaacaccaaacttcatccatctcttgtctctcctacagAGCAAAGCAAAATATGAAGTGATGGTGAGCACTCACAAAACCACAGCTGACATGGTTGAGCCCTATGTGGACCTCATCAACAAGTATCCATCCATAATTACTTTGACTGATCCTTTTCGGAGGGAGgtaaggatagcttagcgttgttgacccatgtctacgccaactaaggtaac Alignment from Spaln_nt2Genome AGTAAAGGGAAGTACGAAGTGATGGTGGGCACCCACAAAAGCGCAGCTGAGATGGTGGAGCTCTACGTGGACCTGATCAACAAGTATCCTTCCATAATCGCCTTAATTGATCCTTTCAGGAAGGAG gccatctgccaccaacaccaaacttcatccatctcttgtctctcctacagAGCAAAGCAAAATATGAAGTGATGGTGAGCACTCACAAAACCACAGCTGACATGGTTGAGCCCTATGTGGACCTCATCAACAAGTATCCATCCATAATTACTTTGACTGATCCTTTTCGGAGGGAGgtaaggatagcttagcgttgttgacccatgtctacgccaactaaggtaac Alignment from Pairagon AGTAAAGGGAAGTACGAAGTGATGGTGGGCACCCACAAAAGCGCAGCTGAGATGGTGGAGCTCTACGTGGACCTGATCAACAAGTATCCTTCCATAATCGCCTTAATTGATCCTTTCAGGAAGGAG gccatctgccaccaacaccaaacttcatccatctcttgtctctcctacagAGCAAAGCAAAATATGAAGTGATGGTGAGCACTCACAAAACCACAGCTGACATGGTTGAGCCCTATGTGGACCTCATCAACAAGTATCCATCCATAATTACTTTGACTGATCCTTTTCGGAGGGAGgtaaggatagcttagcgttgttgacccatgtctacgccaactaaggtaac Alignment from Exonerate_protein2genome AGTAAAGGGAAGTACGAAGTGATGGTGGGCACCCACAAAAGCGCAGCTGAGATGGTGGAGCTCTACGTGGACCTGATCAACAAGTATCCTTCCATAATCGCCTTAATTGATCCTTTCAGGAAGGAG gccatctgccaccaacaccaaacttcatccatctcttgtctctcctacagAGCAAAGCAAAATATGAAGTGATGGTGAGCACTCACAAAACCACAGCTGACATGGTTGAGCCCTATGTGGACCTCATCAACAAGTATCCATCCATAATTACTTTGACTGATCCTTTTCGGAGGGAGgtaaggatagcttagcgttgttgacccatgtctacgccaactaaggtaac Alignment from Exonerate_coding2genome AGTAAAGGGAAGTACGAAGTGATGGTGGGCACCCACAAAAGCGCAGCTGAGATGGTGGAGCTCTACGTGGACCTGATCAACAAGTATCCTTCCATAATCGCCTTAATTGATCCTTTCAGGAAGGAG gccatctgccaccaacaccaaacttcatccatctcttgtctctcctacagAGCAAAGCAAAATATGAAGTGATGGTGAGCACTCACAAAACCACAGCTGACATGGTTGAGCCCTATGTGGACCTCATCAACAAGTATCCATCCATAATTACTTTGACTGATCCTTTTCGGAGGGAGgtaaggatagcttagcgttgttgacccatgtctacgccaactaaggtaac Alignment from GeneWise AGTAAAGGGAAGTACGAAGTGATGGTGGGCACCCACAAAAGCGCAGCTGAGATGGTGGAGCTCTACGTGGACCTGATCAACAAGTATCCTTCCATAATCGCCTTAATTGATCCTTTCAGGAAGGAG gccatctgccaccaacaccaaacttcatccatctcttgtctctcctacagAGCAAAGCAAAATATGAAGTGATGGTGAGCACTCACAAAACCACAGCTGACATGGTTGAGCCCTATGTGGACCTCATCAACAAGTATCCATCCATAATTACTTTGACTGATCCTTTTCGGAGGGAGgtaaggatagcttagcgttgttgacccatgtctacgccaactaaggtaac #### Eno4_ID12840_12 --> 2 - 0 Original Alignment gtAAGAAGCTCCTGGCCGTCTTTGGAAGCACAGACTCGGAGTCCTCTGATGACAGCCTTGTCGATTTG gtgatttcctgcgatcactacctattacaccttcccctgccttgtttcaggtAAGAAACTCCTGGCTGTCTTTGGAAGCACAGACTCAGAATCCTCTGATGACAGCCTTGTTGATTTGgtgagtacagtaatgttagttagccacagaaatgcaacccctccttattt Alignment from CESAR gtAAGAAGCTCCTGGCCGTCTTTGGAAGCACAGACTCGGAGTCCTCTGATGACAGCCTTGTCGATTTG gtgatttcctgcgatcactacctattacaccttcccctgccttgtttcaggtAAGAAACTCCTGGCTGTCTTTGGAAGCACAGACTCAGAATCCTCTGATGACAGCCTTGTTGATTTGgtgagtacagtaatgttagttagccacagaaatgcaacccctccttattt Alignment from Spaln_aa2Genome GTAAGAAGCTCCTGGCCGTCTTTGGAAGCACAGACTCGGAGTCCTCTGATGACAGCCTTGTCGATTTG gtgatttcctgcgatcactacctattacaccttcccctgccttgtttcagGTAAGAAACTCCTGGCTGTCTTTGGAAGCACAGACTCAGAATCCTCTGATGACAGCCTTGTTGATTTGgtgagtacagtaatgttagttagccacagaaatgcaacccctccttattt Alignment from Spaln_nt2Genome GTAAGAAGCTCCTGGCCGTCTTTGGAAGCACAGACTCGGAGTCCTCTGATGACAGCCTTGTCGATTTG gtgatttcctgcgatcactacctattacaccttcccctgccttgtttcagGTAAGAAACTCCTGGCTGTCTTTGGAAGCACAGACTCAGAATCCTCTGATGACAGCCTTGTTGATTTGgtgagtacagtaatgttagttagccacagaaatgcaacccctccttattt Alignment from Pairagon GTAAGAAGCTCCTGGCCGTCTTTGGAAGCACAGACTCGGAGTCCTCTGATGACAGCCTTGTCGATTTG gtgatttcctgcgatcactacctattacaccttcccctgccttgtttcagGTAAGAAACTCCTGGCTGTCTTTGGAAGCACAGACTCAGAATCCTCTGATGACAGCCTTGTTGATTTGgtgagtacagtaatgttagttagccacagaaatgcaacccctccttattt Alignment from Exonerate_protein2genome GTAAGAAGCTCCTGGCCGTCTTTGGAAGCACAGACTCGGAGTCCTCTGATGACAGCCTTGTCGATTTG gtgatttcctgcgatcactacctattacaccttcccctgccttgtttcagGTAAGAAACTCCTGGCTGTCTTTGGAAGCACAGACTCAGAATCCTCTGATGACAGCCTTGTTGATTTGgtgagtacagtaatgttagttagccacagaaatgcaacccctccttattt Alignment from Exonerate_coding2genome GTAAGAAGCTCCTGGCCGTCTTTGGAAGCACAGACTCGGAGTCCTCTGATGACAGCCTTGTCGATTTG gtgatttcctgcgatcactacctattacaccttcccctgccttgtttcagGTAAGAAACTCCTGGCTGTCTTTGGAAGCACAGACTCAGAATCCTCTGATGACAGCCTTGTTGATTTGgtgagtacagtaatgttagttagccacagaaatgcaacccctccttattt Alignment from GeneWise ---CTCCTGGCCGTCTTTGGAAGCACAGACTCGGAGTCCTCTGATGACAGCCTTGTCGATTTG gtgatttcctgcgatcactacctattacaccttcccctgccttgtttcaggtaagAAACTCCTGGCTGTCTTTGGAAGCACAGACTCAGAATCCTCTGATGACAGCCTTGTTGATTTGgtgagtacagtaatgttagttagccacagaaatgcaacccctccttattt #### Eno4_ID12842_13 --> 0 - 1 Original Alignment GCTGTTGGATTCGGTGCCCGGTTTATCAAGTTGGGGGGTCTTTCTCGGGGTGAACGGATGACCAAATACAACCGCCTTCTTGCTATAGAGGAAGAACTCATCCAGAGGGGAGTATGGg gcccagtagattccacctaaagccacttgatgcttctctgttttgtgtagGCTGTAGGCTTAGGTGCTTGGTTCATCAAGCTGGAGGGTCTTTCTCATGGCGAACGGTTTACCACGTACAACCGTCTTCTGGCT---AAGGAAGAACTCATTCAAAGGGGAGTGTGGggtaagtccaactttttgttttgttgaacttataggtaagtgaacaaagat Alignment from CESAR GCTGTTGGATTCGGTGCCCGGTTTATCAAGTTGGGGGGTCTTTCTCGGGGTGAACGGATGACCAAATACAACCGCCTTCTTGCTATAGAGGAAGAACTCATCCAGAGGGGAGTATGGg gcccagtagattccacctaaagccacttgatgcttctctgttttgtgtagGCTGTAGGCTTAGGTGCTTGGTTCATCAAGCTGGAGGGTCTTTCTCATGGCGAACGGTTTACCACGTACAACCGTCTTCTGGCT---AAGGAAGAACTCATTCAAAGGGGAGTGTGGggtaagtccaactttttgttttgttgaacttataggtaagtgaacaaagat Alignment from Spaln_aa2Genome GCTGTTGGATTCGGTGCCCGGTTTATCAAGTTGGGGGGTCTTTCTCGGGGTGAACGGATGACCAAATACAACCGCCTTCTTGCTATAGAGGAAGAACTCATCCAGAGGGGAGTATGGG gcccagtagattccacctaaagccacttgatgcttctctgttttgtgtagGCTGTAGGCTTAGGTGCTTGGTTCATCAAGCTGGAGGGTCTTTCTCATGGCGAACGGTTTACCACGTACAACCGTCTTCTGGCT---AAGGAAGAACTCATTCAAAGGGGAGTGTGGGgtaagtccaactttttgttttgttgaacttataggtaagtgaacaaagat Alignment from Spaln_nt2Genome GCTGTTGGATTCGGTGCCCGGTTTATCAAGTTGGGGGGTCTTTCTCGGGGTGAACGGATGACCAAATACAACCGCCTTCTTGCTATAGAGGAAGAACTCATCCAGAGGGGAGTATGGG gcccagtagattccacctaaagccacttgatgcttctctgttttgtgtagGCTGTAGGCTTAGGTGCTTGGTTCATCAAGCTGGAGGGTCTTTCTCATGGCGAACGGTTTACCACGTACAACCGTCTTCTGGCTA---AGGAAGAACTCATTCAAAGGGGAGTGTGGGgtaagtccaactttttgttttgttgaacttataggtaagtgaacaaagat Alignment from Pairagon GCTGTTGGATTCGGTGCCCGGTTTATCAAGTTGGGGGGTCTTTCTCGGGGTGAACGGATGACCAAATACAACCGCCTTCTTGCTATAGAGGAAGAACTCATCCAGAGGGGAGTATGGG gcccagtagattccacctaaagccacttgatgcttctctgttttgtgtagGCTGTAGGCTTAGGTGCTTGGTTCATCAAGCTGGAGGGTCTTTCTCATGGCGAACGGTTTACCACGTACAACCGTCTTCTGGCTA---AGGAAGAACTCATTCAAAGGGGAGTGTGGGgtaagtccaactttttgttttgttgaacttataggtaagtgaacaaagat Alignment from Exonerate_protein2genome GCTGTTGGATTCGGTGCCCGGTTTATCAAGTTGGGGGGTCTTTCTCGGGGTGAACGGATGACCAAATACAACCGCCTTCTTGCTATAGAGGAAGAACTCATCCAGAGGGGAGTATGGG gcccagtagattccacctaaagccacttgatgcttctctgttttgtgtagGCTGTAGGCTTAGGTGCTTGGTTCATCAAGCTGGAGGGTCTTTCTCATGGCGAACGGTTTACCACGTACAACCGTCTTCTGGCT---AAGGAAGAACTCATTCAAAGGGGAGTGTGGGgtaagtccaactttttgttttgttgaacttataggtaagtgaacaaagat Alignment from Exonerate_coding2genome GCTGTTGGATTCGGTGCCCGGTTTATCAAGTTGGGGGGTCTTTCTCGGGGTGAACGGATGACCAAATACAACCGCCTTCTTGCTATAGAGGAAGAACTCATCCAGAGGGGAGTATGGG gcccagtagattccacctaaagccacttgatgcttctctgttttgtgtagGCTGTAGGCTTAGGTGCTTGGTTCATCAAGCTGGAGGGTCTTTCTCATGGCGAACGGTTTACCACGTACAACCGTCTTCTGGCT---AAGGAAGAACTCATTCAAAGGGGAGTGTGGGgtaagtccaactttttgttttgttgaacttataggtaagtgaacaaagat Alignment from GeneWise GCTGTTGGATTCGGTGCCCGGTTTATCAAGTTGGGGGGTCTTTCTCGGGGTGAACGGATGACCAAATACAACCGCCTTCTTGCTATAGAGGAAGAACTCATCCAGAGGGGAGTATGGG gcccagtagattccacctaaagccacttgatgcttctctgttttgtgtagGCTGTAGGCTTAGGTGCTTGGTTCATCAAGCTGGAGGGTCTTTCTCATGGCGAACGGTTTACCACGTACAACCGTCTTCTGGCT---AAGGAAGAACTCATTCAAAGGGGAGTGTGGGgtaagtccaactttttgttttgttgaacttataggtaagtgaacaaagat #### Entpd1_ID8014_8 --> 0 - 0 Original Alignment GCGTTTTCTGCTTTCTACTTT---GTGATGGATTTTTTTAAGAAGGTAGCGAAAAAC---AGTGTCATCTCTCAGGAGAAAATGACCGAGATAACAAAAAATTTTTGCTCAAAATCTTGGGAAGAG gtggtctgtatctgtgtagtcacatccctttgctgtctctgtgtgtatagGCA---TCTGCATTATATTTCTTTGTTATGGACTTTTTTGAGAAAGTAGCTAAAAAAAACAGTCTTCTCTCTCAGGAG------TCTGACATAACCAAGAATTGCTGCTCAAAATCTTGGGAAGAGgtaagtgaccatagaccatggggcactagctatggttcattacccgtgta Alignment from CESAR GCGTTTTCTGCTTTCTACTTTGTGATGGATTTTTTTAAGAAGGTAGCG---AAAAACAGTGTCATCTCTCAGGAGAAAATGACCGAGATAACAAAAAATTTTTGCTCAAAATCTTGGGAAGAG gtggtctgtatctgtgtagtcacatccctttgctgtctctgtgtgtatagGCATCTGCATTATATTTCTTTGTTATGGACTTTTTTGAGAAAGTAGCTAAAAAAAACAGTCTTCTCTCTCAGGAG------TCTGACATAACCAAGAATTGCTGCTCAAAATCTTGGGAAGAGgtaagtgaccatagaccatggggcactagctatggttcattacccgtgta Alignment from Spaln_aa2Genome GCGTTTTCTGCTTTCTACTTTGTGATGGATTTTTTTAAGAAGGTAGCG---AAAAACAGTGTCATCTCTCAGGAGAAAATGACCGAGATAACAAAAAATTTTTGCTCAAAATCTTGGGAAGAG gtggtctgtatctgtgtagtcacatccctttgctgtctctgtgtgtatagGCATCTGCATTATATTTCTTTGTTATGGACTTTTTTGAGAAAGTAGCTAAAAAAAACAGTCTTCTCTCTCAGGAG------TCTGACATAACCAAGAATTGCTGCTCAAAATCTTGGGAAGAGgtaagtgaccatagaccatggggcactagctatggttcattacccgtgta Alignment from Spaln_nt2Genome GCGTTTTCTGCTTTCTACTTTGTGATGGATTTTTTTAAGAAGGTAGCGAAAAAC---AGTGTCATCTCTCAGGAGAAAATGACCGAGATAACAAAAAATTTTTGCTCAAAATCTTGGGAAGAG gtggtctgtatctgtgtagtcacatccctttgctgtctctgtgtgtatagGCATCTGCATTATATTTCTTTGTTATGGACTTTTTTGAGAAAGTAGCTAAAAAAAACAGTCTTCTCTCTCAGGA------GTCTGACATAACCAAGAATTGCTGCTCAAAATCTTGGGAAGAGgtaagtgaccatagaccatggggcactagctatggttcattacccgtgta Alignment from Pairagon GCGTTTTCTGCTTTCTA---CTTTGTGATGGATTTTTTTAAGAAGGTAGC---GAAAAACAGTGTCATCTCTCAGGAGAAAATGACCGAGATAACAAAAAATTTTTGCTCAAAATCTTGGGAAGAG gtggtctgtatctgtgtagtcacatccctttgctgtctctgtgtgtatagGCA---TCTGCATTATATTTCTTTGTTATGGACTTTTTTGAGAAAGTAGCTAAAAAAAACAGTCTTCTCTCTCAGGA------GTCTGACATAACCAAGAATTGCTGCTCAAAATCTTGGGAAGAGgtaagtgaccatagaccatggggcactagctatggttcattacccgtgta Alignment from Exonerate_protein2genome GCGTTTTCTGCTTTCTACTTTGTGATGGATTTTTTTAAGAAGGTAGCGAAAAACAGTGTCATCTCTCAGGAGAAAATGACCGAGATAACAAAAAATTTTTGCTCAAAATCTTGGGAAGAG gtggtctgtatctgtgtagtcacatccctttgctgtctctgtgtgtatagGCATCTGCATTATATTTCTTTGTTATGGACTTTTTTGAGAAAGTAGCTAAAAAAAACAGTCTTCTCTCTCAGGAG---TCTGACATAACCAAGAATTGCTGCTCAAAATCTTGGGAAGAGgtaagtgaccatagaccatggggcactagctatggttcattacccgtgta Alignment from Exonerate_coding2genome GCGTTTTCTGCTTTCTACTTTGTGATGGATTTTTTTAAGAAGGTAGCGAAAAACAGTGTCATCTCTCAGGAGAAAATGACCGAGATAACAAAAAATTTTTGCTCAAAATCTTGGGAAGAG gtggtctgtatctgtgtagtcacatccctttgctgtctctgtgtgtatagGCATCTGCATTATATTTCTTTGTTATGGACTTTTTTGAGAAAGTAGCTAAAAAAAACAGTCTTCTCTCTCAGGAG---TCTGACATAACCAAGAATTGCTGCTCAAAATCTTGGGAAGAGgtaagtgaccatagaccatggggcactagctatggttcattacccgtgta Alignment from GeneWise GCGTTTTCTGCTTTCTACTTTGTGATGGATTTTTTTAAGAAGGTAGCGAAA---AACAGTGTCATCTCTCAGGAGAAAATGACCGAGATAACAAAAAATTTTTGCTCAAAATCTTGGGAAGAG gtggtctgtatctgtgtagtcacatccctttgctgtctctgtgtgtatagGCATCTGCATTATATTTCTTTGTTATGGACTTTTTTGAGAAAGTAGCTAAAAAAAACAGTCTTCTCTCTCAGGAG------TCTGACATAACCAAGAATTGCTGCTCAAAATCTTGGGAAGAGgtaagtgaccatagaccatggggcactagctatggttcattacccgtgta #### Entpd1_ID8015_9 --> 0 - 0 Original Alignment ACAAAGACATCTTATCCTTCAGTAAAGGAGAAGTACCTGAGTGAGTACTGCTTCTCGGGCGCCTACATCCTCTCTCTCCTGCAAGGCTATAACTTCACAGACAGCTCCTGGGAACAGATTCATTTTATGGGCAAG taaaggtcaagtgtacaaaaactcagccacttaccatcttttttacctagACAGAGACATCGTACCCATCAATAAAAGAGAAGTACCTGAGTGAATACTGCTTCTCAGGTGCTTTTATCCTATCACTTTTGCAAGGCTACAACTTCACTGACAGCTCCTGGGAACAAACCCACTTTATGGGTAAAgtgagctacagtgtgttgaaaggtccacattttgacccttttagtctaat Alignment from CESAR ACAAAGACATCTTATCCTTCAGTAAAGGAGAAGTACCTGAGTGAGTACTGCTTCTCGGGCGCCTACATCCTCTCTCTCCTGCAAGGCTATAACTTCACAGACAGCTCCTGGGAACAGATTCATTTTATGGGCAAG taaaggtcaagtgtacaaaaactcagccacttaccatcttttttacctagACAGAGACATCGTACCCATCAATAAAAGAGAAGTACCTGAGTGAATACTGCTTCTCAGGTGCTTTTATCCTATCACTTTTGCAAGGCTACAACTTCACTGACAGCTCCTGGGAACAAACCCACTTTATGGGTAAAgtgagctacagtgtgttgaaaggtccacattttgacccttttagtctaat Alignment from Spaln_aa2Genome ACAAAGACATCTTATCCTTCAGTAAAGGAGAAGTACCTGAGTGAGTACTGCTTCTCGGGCGCCTACATCCTCTCTCTCCTGCAAGGCTATAACTTCACAGACAGCTCCTGGGAACAGATTCATTTTATGGGCAAG taaaggtcaagtgtacaaaaactcagccacttaccatcttttttacctagACAGAGACATCGTACCCATCAATAAAAGAGAAGTACCTGAGTGAATACTGCTTCTCAGGTGCTTTTATCCTATCACTTTTGCAAGGCTACAACTTCACTGACAGCTCCTGGGAACAAACCCACTTTATGGGTAAAgtgagctacagtgtgttgaaaggtccacattttgacccttttagtctaat Alignment from Spaln_nt2Genome ACAAAGACATCTTATCCTTCAGTAAAGGAGAAGTACCTGAGTGAGTACTGCTTCTCGGGCGCCTACATCCTCTCTCTCCTGCAAGGCTATAACTTCACAGACAGCTCCTGGGAACAGATTCATTTTATGGGCAAG taaaggtcaagtgtacaaaaactcagccacttaccatcttttttacctagACAGAGACATCGTACCCATCAATAAAAGAGAAGTACCTGAGTGAATACTGCTTCTCAGGTGCTTTTATCCTATCACTTTTGCAAGGCTACAACTTCACTGACAGCTCCTGGGAACAAACCCACTTTATGGGTAAAgtgagctacagtgtgttgaaaggtccacattttgacccttttagtctaat Alignment from Pairagon ACAAAGACATCTTATCCTTCAGTAAAGGAGAAGTACCTGAGTGAGTACTGCTTCTCGGGCGCCTACATCCTCTCTCTCCTGCAAGGCTATAACTTCACAGACAGCTCCTGGGAACAGATTCATTTTATGGGCAAG taaaggtcaagtgtacaaaaactcagccacttaccatcttttttacctagACAGAGACATCGTACCCATCAATAAAAGAGAAGTACCTGAGTGAATACTGCTTCTCAGGTGCTTTTATCCTATCACTTTTGCAAGGCTACAACTTCACTGACAGCTCCTGGGAACAAACCCACTTTATGGGTAAAgtgagctacagtgtgttgaaaggtccacattttgacccttttagtctaat Alignment from Exonerate_protein2genome ACAAAGACATCTTATCCTTCAGTAAAGGAGAAGTACCTGAGTGAGTACTGCTTCTCGGGCGCCTACATCCTCTCTCTCCTGCAAGGCTATAACTTCACAGACAGCTCCTGGGAACAGATTCATTTTATGGGCAAG taaaggtcaagtgtacaaaaactcagccacttaccatcttttttacctagACAGAGACATCGTACCCATCAATAAAAGAGAAGTACCTGAGTGAATACTGCTTCTCAGGTGCTTTTATCCTATCACTTTTGCAAGGCTACAACTTCACTGACAGCTCCTGGGAACAAACCCACTTTATGGGTAAAgtgagctacagtgtgttgaaaggtccacattttgacccttttagtctaat Alignment from Exonerate_coding2genome ACAAAGACATCTTATCCTTCAGTAAAGGAGAAGTACCTGAGTGAGTACTGCTTCTCGGGCGCCTACATCCTCTCTCTCCTGCAAGGCTATAACTTCACAGACAGCTCCTGGGAACAGATTCATTTTATGGGCAAG taaaggtcaagtgtacaaaaactcagccacttaccatcttttttacctagACAGAGACATCGTACCCATCAATAAAAGAGAAGTACCTGAGTGAATACTGCTTCTCAGGTGCTTTTATCCTATCACTTTTGCAAGGCTACAACTTCACTGACAGCTCCTGGGAACAAACCCACTTTATGGGTAAAgtgagctacagtgtgttgaaaggtccacattttgacccttttagtctaat Alignment from GeneWise ACAAAGACATCTTATCCTTCAGTAAAGGAGAAGTACCTGAGTGAGTACTGCTTCTCGGGCGCCTACATCCTCTCTCTCCTGCAAGGCTATAACTTCACAGACAGCTCCTGGGAACAGATTCATTTTATGGGCAAG taaaggtcaagtgtacaaaaactcagccacttaccatcttttttacctagACAGAGACATCGTACCCATCAATAAAAGAGAAGTACCTGAGTGAATACTGCTTCTCAGGTGCTTTTATCCTATCACTTTTGCAAGGCTACAACTTCACTGACAGCTCCTGGGAACAAACCCACTTTATGGGTAAAgtgagctacagtgtgttgaaaggtccacattttgacccttttagtctaat #### Entpd7_ID8802_11 --> 1 - 2 Original Alignment gTATCAGTGTTTTAAGTCCGCTTGGATGTACGAAGTCCTGCACGAGGGGTTCCACTTCCCCTACGACTACCCAAACCTGCAGACAGCGCAGCTGGTGTATGACCGAGAGGTGCAGTGGACGCTGGGAGCAATTCTGTATAAAACCCGATTCCTGCCTCTCag tgacctgatccctttttttctagcatttcccttcgtttctctgcttgcaggTATCAGTGTTTTAAGTCTGCTTGGATGTATGAAGTCTCGCATGAAGAGTTCCACTTCCCCTATGACTACCCGAACCTACAAATGGCACAACTAGTGTATGATCGAGAGGTGCAATGGACATTGGGAGCAATTTTGTATAAAACACATTTCTTGCCTCTCaggtatttactgtatccaagatactctactgcttactaatttacacatgcaa Alignment from CESAR gTATCAGTGTTTTAAGTCCGCTTGGATGTACGAAGTCCTGCACGAGGGGTTCCACTTCCCCTACGACTACCCAAACCTGCAGACAGCGCAGCTGGTGTATGACCGAGAGGTGCAGTGGACGCTGGGAGCAATTCTGTATAAAACCCGATTCCTGCCTCTCag tgacctgatccctttttttctagcatttcccttcgtttctctgcttgcaggTATCAGTGTTTTAAGTCTGCTTGGATGTATGAAGTCTCGCATGAAGAGTTCCACTTCCCCTATGACTACCCGAACCTACAAATGGCACAACTAGTGTATGATCGAGAGGTGCAATGGACATTGGGAGCAATTTTGTATAAAACACATTTCTTGCCTCTCaggtatttactgtatccaagatactctactgcttactaatttacacatgcaa Alignment from Spaln_aa2Genome GTATCAGTGTTTTAAGTCCGCTTGGATGTACGAAGTCCTGCACGAGGGGTTCCACTTCCCCTACGACTACCCAAACCTGCAGACAGCGCAGCTGGTGTATGACCGAGAGGTGCAGTGGACGCTGGGAGCAATTCTGTATAAAACCCGATTCCTGCCTCTCAG tgacctgatccctttttttctagcatttcccttcgtttctctgcttgcagGTATCAGTGTTTTAAGTCTGCTTGGATGTATGAAGTCTCGCATGAAGAGTTCCACTTCCCCTATGACTACCCGAACCTACAAATGGCACAACTAGTGTATGATCGAGAGGTGCAATGGACATTGGGAGCAATTTTGTATAAAACACATTTCTTGCCTCTCAGgtatttactgtatccaagatactctactgcttactaatttacacatgcaa Alignment from Spaln_nt2Genome GTATCAGTGTTTTAAGTCCGCTTGGATGTACGAAGTCCTGCACGAGGGGTTCCACTTCCCCTACGACTACCCAAACCTGCAGACAGCGCAGCTGGTGTATGACCGAGAGGTGCAGTGGACGCTGGGAGCAATTCTGTATAAAACCCGATTCCTGCCTCTCAG tgacctgatccctttttttctagcatttcccttcgtttctctgcttgcagGTATCAGTGTTTTAAGTCTGCTTGGATGTATGAAGTCTCGCATGAAGAGTTCCACTTCCCCTATGACTACCCGAACCTACAAATGGCACAACTAGTGTATGATCGAGAGGTGCAATGGACATTGGGAGCAATTTTGTATAAAACACATTTCTTGCCTCTCAGgtatttactgtatccaagatactctactgcttactaatttacacatgcaa Alignment from Pairagon GTATCAGTGTTTTAAGTCCGCTTGGATGTACGAAGTCCTGCACGAGGGGTTCCACTTCCCCTACGACTACCCAAACCTGCAGACAGCGCAGCTGGTGTATGACCGAGAGGTGCAGTGGACGCTGGGAGCAATTCTGTATAAAACCCGATTCCTGCCTCTCAG tgacctgatccctttttttctagcatttcccttcgtttctctgcttgcagGTATCAGTGTTTTAAGTCTGCTTGGATGTATGAAGTCTCGCATGAAGAGTTCCACTTCCCCTATGACTACCCGAACCTACAAATGGCACAACTAGTGTATGATCGAGAGGTGCAATGGACATTGGGAGCAATTTTGTATAAAACACATTTCTTGCCTCTCAGgtatttactgtatccaagatactctactgcttactaatttacacatgcaa Alignment from Exonerate_protein2genome GTATCAGTGTTTTAAGTCCGCTTGGATGTACGAAGTCCTGCACGAGGGGTTCCACTTCCCCTACGACTACCCAAACCTGCAGACAGCGCAGCTGGTGTATGACCGAGAGGTGCAGTGGACGCTGGGAGCAATTCTGTATAAAACCCGATTCCTGCCTCTCAG tgacctgatccctttttttctagcatttcccttcgtttctctgcttgcagGTATCAGTGTTTTAAGTCTGCTTGGATGTATGAAGTCTCGCATGAAGAGTTCCACTTCCCCTATGACTACCCGAACCTACAAATGGCACAACTAGTGTATGATCGAGAGGTGCAATGGACATTGGGAGCAATTTTGTATAAAACACATTTCTTGCCTCTCAGgtatttactgtatccaagatactctactgcttactaatttacacatgcaa Alignment from Exonerate_coding2genome GTATCAGTGTTTTAAGTCCGCTTGGATGTACGAAGTCCTGCACGAGGGGTTCCACTTCCCCTACGACTACCCAAACCTGCAGACAGCGCAGCTGGTGTATGACCGAGAGGTGCAGTGGACGCTGGGAGCAATTCTGTATAAAACCCGATTCCTGCCTCTCAG tgacctgatccctttttttctagcatttcccttcgtttctctgcttgcagGTATCAGTGTTTTAAGTCTGCTTGGATGTATGAAGTCTCGCATGAAGAGTTCCACTTCCCCTATGACTACCCGAACCTACAAATGGCACAACTAGTGTATGATCGAGAGGTGCAATGGACATTGGGAGCAATTTTGTATAAAACACATTTCTTGCCTCTCAGgtatttactgtatccaagatactctactgcttactaatttacacatgcaa Alignment from GeneWise GTATCAGTGTTTTAAGTCCGCTTGGATGTACGAAGTCCTGCACGAGGGGTTCCACTTCCCCTACGACTACCCAAACCTGCAGACAGCGCAGCTGGTGTATGACCGAGAGGTGCAGTGGACGCTGGGAGCAATTCTGTATAAAACCCGATTCCTGCCTCTCAG tgacctgatccctttttttctagcatttcccttcgtttctctgcttgcagGTATCAGTGTTTTAAGTCTGCTTGGATGTATGAAGTCTCGCATGAAGAGTTCCACTTCCCCTATGACTACCCGAACCTACAAATGGCACAACTAGTGTATGATCGAGAGGTGCAATGGACATTGGGAGCAATTTTGTATAAAACACATTTCTTGCCTCTCAGgtatttactgtatccaagatactctactgcttactaatttacacatgcaa #### Erlin1_ID8894_10 --> 2 - 0 Original Alignment atGCTGCGTTCCTGGCCCGAGAGAAGGCAAAAGCAGATGCCGAGTATTACGCTGCACACAAATACGCCACCTCAAACAAG acattctgggacttttcattgcacatatcatgcctgcctcctccctgcagatGCTGCATTCTTAGCCTGTGAGAAGTCGAAAGCTGATGCTGAATACTATGCTGCACACAAGTATTCAACATCAAATAAGgtaagagggtgccctcttccccattcattgccatctatcttgtgcatgca Alignment from CESAR atGCTGCGTTCCTGGCCCGAGAGAAGGCAAAAGCAGATGCCGAGTATTACGCTGCACACAAATACGCCACCTCAAACAAG acattctgggacttttcattgcacatatcatgcctgcctcctccctgcagatGCTGCATTCTTAGCCTGTGAGAAGTCGAAAGCTGATGCTGAATACTATGCTGCACACAAGTATTCAACATCAAATAAGgtaagagggtgccctcttccccattcattgccatctatcttgtgcatgca Alignment from Spaln_aa2Genome ATGCTGCGTTCCTGGCCCGAGAGAAGGCAAAAGCAGATGCCGAGTATTACGCTGCACACAAATACGCCACCTCAAACAAG acattctgggacttttcattgcacatatcatgcctgcctcctccctgcagATGCTGCATTCTTAGCCTGTGAGAAGTCGAAAGCTGATGCTGAATACTATGCTGCACACAAGTATTCAACATCAAATAAGgtaagagggtgccctcttccccattcattgccatctatcttgtgcatgca Alignment from Spaln_nt2Genome ATGCTGCGTTCCTGGCCCGAGAGAAGGCAAAAGCAGATGCCGAGTATTACGCTGCACACAAATACGCCACCTCAAACAAG acattctgggacttttcattgcacatatcatgcctgcctcctccctgcagATGCTGCATTCTTAGCCTGTGAGAAGTCGAAAGCTGATGCTGAATACTATGCTGCACACAAGTATTCAACATCAAATAAGgtaagagggtgccctcttccccattcattgccatctatcttgtgcatgca Alignment from Pairagon ATGCTGCGTTCCTGGCCCGAGAGAAGGCAAAAGCAGATGCCGAGTATTACGCTGCACACAAATACGCCACCTCAAACAAG acattctgggacttttcattgcacatatcatgcctgcctcctccctgcagATGCTGCATTCTTAGCCTGTGAGAAGTCGAAAGCTGATGCTGAATACTATGCTGCACACAAGTATTCAACATCAAATAAGgtaagagggtgccctcttccccattcattgccatctatcttgtgcatgca Alignment from Exonerate_protein2genome ATGCTGCGTTCCTGGCCCGAGAGAAGGCAAAAGCAGATGCCGAGTATTACGCTGCACACAAATACGCCACCTCAAACAAG acattctgggacttttcattgcacatatcatgcctgcctcctccctgcagATGCTGCATTCTTAGCCTGTGAGAAGTCGAAAGCTGATGCTGAATACTATGCTGCACACAAGTATTCAACATCAAATAAGgtaagagggtgccctcttccccattcattgccatctatcttgtgcatgca Alignment from Exonerate_coding2genome ATGCTGCGTTCCTGGCCCGAGAGAAGGCAAAAGCAGATGCCGAGTATTACGCTGCACACAAATACGCCACCTCAAACAAG acattctgggacttttcattgcacatatcatgcctgcctcctccctgcagATGCTGCATTCTTAGCCTGTGAGAAGTCGAAAGCTGATGCTGAATACTATGCTGCACACAAGTATTCAACATCAAATAAGgtaagagggtgccctcttccccattcattgccatctatcttgtgcatgca Alignment from GeneWise ATGCTGCGTTCCTGGCCCGAGAGAAGGCAAAAGCAGATGCCGAGTATTACGCTGCACACAAATACGCCACCTCAAACAAG acattctgggacttttcattgcacatatcatgcctgcctcctccctgcagATGCTGCATTCTTAGCCTGTGAGAAGTCGAAAGCTGATGCTGAATACTATGCTGCACACAAGTATTCAACATCAAATAAGgtaagagggtgccctcttccccattcattgccatctatcttgtgcatgca #### Erlin1_ID8895_9 --> 2 - 1 Original Alignment aaGCAGAGAAGATTGCACAAGTAGCAAAAATTCGATTTCAACAGAAAGTGATGGAGAAAGAAACTGAAAAACGCATTTCTGAGATTGAAg ggtgtagctaattctaaaatatgtttttaataaaactgccttttttctagaaGCAGGAATGATTGCACAAGTAGCAAAAATTCGGTTCCAACAAAAAGTAATGGAGAAAGAGACTGAAAAACACATTTCTGAGATTGAAggtgaggcaatgaaagttgcagttttctgtactagccctgcaggcttatgg Alignment from CESAR aaGCAGAGAAGATTGCACAAGTAGCAAAAATTCGATTTCAACAGAAAGTGATGGAGAAAGAAACTGAAAAACGCATTTCTGAGATTGAAg ggtgtagctaattctaaaatatgtttttaataaaactgccttttttctagaaGCAGGAATGATTGCACAAGTAGCAAAAATTCGGTTCCAACAAAAAGTAATGGAGAAAGAGACTGAAAAACACATTTCTGAGATTGAAggtgaggcaatgaaagttgcagttttctgtactagccctgcaggcttatgg Alignment from Spaln_aa2Genome AAGCAGAGAAGATTGCACAAGTAGCAAAAATTCGATTTCAACAGAAAGTGATGGAGAAAGAAACTGAAAAACGCATTTCTGAGATTGAAG ggtgtagctaattctaaaatatgtttttaataaaactgccttttttctagAAGCAGGAATGATTGCACAAGTAGCAAAAATTCGGTTCCAACAAAAAGTAATGGAGAAAGAGACTGAAAAACACATTTCTGAGATTGAAGgtgaggcaatgaaagttgcagttttctgtactagccctgcaggcttatgg Alignment from Spaln_nt2Genome AAGCAGAGAAGATTGCACAAGTAGCAAAAATTCGATTTCAACAGAAAGTGATGGAGAAAGAAACTGAAAAACGCATTTCTGAGATTGAAG ggtgtagctaattctaaaatatgtttttaataaaactgccttttttctagAAGCAGGAATGATTGCACAAGTAGCAAAAATTCGGTTCCAACAAAAAGTAATGGAGAAAGAGACTGAAAAACACATTTCTGAGATTGAAGgtgaggcaatgaaagttgcagttttctgtactagccctgcaggcttatgg Alignment from Pairagon AAGCAGAGAAGATTGCACAAGTAGCAAAAATTCGATTTCAACAGAAAGTGATGGAGAAAGAAACTGAAAAACGCATTTCTGAGATTGAAG ggtgtagctaattctaaaatatgtttttaataaaactgccttttttctagAAGCAGGAATGATTGCACAAGTAGCAAAAATTCGGTTCCAACAAAAAGTAATGGAGAAAGAGACTGAAAAACACATTTCTGAGATTGAAGgtgaggcaatgaaagttgcagttttctgtactagccctgcaggcttatgg Alignment from Exonerate_protein2genome AAGCAGAGAAGATTGCACAAGTAGCAAAAATTCGATTTCAACAGAAAGTGATGGAGAAAGAAACTGAAAAACGCATTTCTGAGATTGAAG ggtgtagctaattctaaaatatgtttttaataaaactgccttttttctagAAGCAGGAATGATTGCACAAGTAGCAAAAATTCGGTTCCAACAAAAAGTAATGGAGAAAGAGACTGAAAAACACATTTCTGAGATTGAAGgtgaggcaatgaaagttgcagttttctgtactagccctgcaggcttatgg Alignment from Exonerate_coding2genome AAGCAGAGAAGATTGCACAAGTAGCAAAAATTCGATTTCAACAGAAAGTGATGGAGAAAGAAACTGAAAAACGCATTTCTGAGATTGAAG ggtgtagctaattctaaaatatgtttttaataaaactgccttttttctagAAGCAGGAATGATTGCACAAGTAGCAAAAATTCGGTTCCAACAAAAAGTAATGGAGAAAGAGACTGAAAAACACATTTCTGAGATTGAAGgtgaggcaatgaaagttgcagttttctgtactagccctgcaggcttatgg Alignment from GeneWise AAGCAGAGAAGATTGCACAAGTAGCAAAAATTCGATTTCAACAGAAAGTGATGGAGAAAGAAACTGAAAAACGCATTTCTGAGATTGAAG ggtgtagctaattctaaaatatgtttttaataaaactgccttttttctagAAGCAGGAATGATTGCACAAGTAGCAAAAATTCGGTTCCAACAAAAAGTAATGGAGAAAGAGACTGAAAAACACATTTCTGAGATTGAAGgtgaggcaatgaaagttgcagttttctgtactagccctgcaggcttatgg #### Erlin1_ID8897_7 --> 0 - 2 Original Alignment GCTGTGCGTGTTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAat acaaaggtcagttatgctatttggggctgtccaccagagtctttctgcagGCTGTCCATATTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAACTTTGAATTAatgtaggtaacactcatgatttaaaaaccagcaagatcctgatagagcagag Alignment from CESAR GCTGTGCGTGTTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAat acaaaggtcagttatgctatttggggctgtccaccagagtctttctgcagGCTGTCCATATTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAACTTTGAATTAatgtaggtaacactcatgatttaaaaaccagcaagatcctgatagagcagag Alignment from Spaln_aa2Genome GCTGTGCGTGTTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAAT acaaaggtcagttatgctatttggggctgtccaccagagtctttctgcagGCTGTCCATATTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAACTTTGAATTAATgtaggtaacactcatgatttaaaaaccagcaagatcctgatagagcagag Alignment from Spaln_nt2Genome GCTGTGCGTGTTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAAT acaaaggtcagttatgctatttggggctgtccaccagagtctttctgcagGCTGTCCATATTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAACTTTGAATTAATgtaggtaacactcatgatttaaaaaccagcaagatcctgatagagcagag Alignment from Pairagon GCTGTGCGTGTTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAAT acaaaggtcagttatgctatttggggctgtccaccagagtctttctgcagGCTGTCCATATTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAACTTTGAATTAATgtaggtaacactcatgatttaaaaaccagcaagatcctgatagagcagag Alignment from Exonerate_protein2genome GCTGTGCGTGTTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAAT acaaaggtcagttatgctatttggggctgtccaccagagtctttctgcagGCTGTCCATATTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAACTTTGAATTAATgtaggtaacactcatgatttaaaaaccagcaagatcctgatagagcagag Alignment from Exonerate_coding2genome GCTGTGCGTGTTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAAT acaaaggtcagttatgctatttggggctgtccaccagagtctttctgcagGCTGTCCATATTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAACTTTGAATTAATgtaggtaacactcatgatttaaaaaccagcaagatcctgatagagcagag Alignment from GeneWise GCTGTGCGTGTTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAAT acaaaggtcagttatgctatttggggctgtccaccagagtctttctgcagGCTGTCCATATTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAACTTTGAATTAATgtaggtaacactcatgatttaaaaaccagcaagatcctgatagagcagag #### Erlin1_ID8899_5 --> 2 - 1 Original Alignment tgTTTGACATTGTGAGGAACTATACTGCAGACTACGACAAGACTTTAATCTTCAATAAAATCCACCATGAGCTGAACCAGTTTTGCAGTGCCCACACACTTCAAGAAGTTTACATAGAATTGTTTg aagagagggttggacttaaggtgaagcctcccaacttgattgttttgtagtgTTTGACATTGTGAGGAACTATACAGCAGGCTATGACAAAACTTTAATCTTTAATAAAATCCATCATGAACTTAACCAATTTCGTAGTGCCCATACACTTCAAGAAGTCTATATAGAGTTGTTTggtatgtattattatgtcctacattacatgcatagttaccagcagtcatga Alignment from CESAR tgTTTGACATTGTGAGGAACTATACTGCAGACTACGACAAGACTTTAATCTTCAATAAAATCCACCATGAGCTGAACCAGTTTTGCAGTGCCCACACACTTCAAGAAGTTTACATAGAATTGTTTg aagagagggttggacttaaggtgaagcctcccaacttgattgttttgtagtgTTTGACATTGTGAGGAACTATACAGCAGGCTATGACAAAACTTTAATCTTTAATAAAATCCATCATGAACTTAACCAATTTCGTAGTGCCCATACACTTCAAGAAGTCTATATAGAGTTGTTTggtatgtattattatgtcctacattacatgcatagttaccagcagtcatga Alignment from Spaln_aa2Genome TGTTTGACATTGTGAGGAACTATACTGCAGACTACGACAAGACTTTAATCTTCAATAAAATCCACCATGAGCTGAACCAGTTTTGCAGTGCCCACACACTTCAAGAAGTTTACATAGAATTGTTTG aagagagggttggacttaaggtgaagcctcccaacttgattgttttgtagTGTTTGACATTGTGAGGAACTATACAGCAGGCTATGACAAAACTTTAATCTTTAATAAAATCCATCATGAACTTAACCAATTTCGTAGTGCCCATACACTTCAAGAAGTCTATATAGAGTTGTTTGgtatgtattattatgtcctacattacatgcatagttaccagcagtcatga Alignment from Spaln_nt2Genome TGTTTGACATTGTGAGGAACTATACTGCAGACTACGACAAGACTTTAATCTTCAATAAAATCCACCATGAGCTGAACCAGTTTTGCAGTGCCCACACACTTCAAGAAGTTTACATAGAATTGTTTG aagagagggttggacttaaggtgaagcctcccaacttgattgttttgtagTGTTTGACATTGTGAGGAACTATACAGCAGGCTATGACAAAACTTTAATCTTTAATAAAATCCATCATGAACTTAACCAATTTCGTAGTGCCCATACACTTCAAGAAGTCTATATAGAGTTGTTTGgtatgtattattatgtcctacattacatgcatagttaccagcagtcatga Alignment from Pairagon TGTTTGACATTGTGAGGAACTATACTGCAGACTACGACAAGACTTTAATCTTCAATAAAATCCACCATGAGCTGAACCAGTTTTGCAGTGCCCACACACTTCAAGAAGTTTACATAGAATTGTTTG aagagagggttggacttaaggtgaagcctcccaacttgattgttttgtagTGTTTGACATTGTGAGGAACTATACAGCAGGCTATGACAAAACTTTAATCTTTAATAAAATCCATCATGAACTTAACCAATTTCGTAGTGCCCATACACTTCAAGAAGTCTATATAGAGTTGTTTGgtatgtattattatgtcctacattacatgcatagttaccagcagtcatga Alignment from Exonerate_protein2genome TGTTTGACATTGTGAGGAACTATACTGCAGACTACGACAAGACTTTAATCTTCAATAAAATCCACCATGAGCTGAACCAGTTTTGCAGTGCCCACACACTTCAAGAAGTTTACATAGAATTGTTTG aagagagggttggacttaaggtgaagcctcccaacttgattgttttgtagTGTTTGACATTGTGAGGAACTATACAGCAGGCTATGACAAAACTTTAATCTTTAATAAAATCCATCATGAACTTAACCAATTTCGTAGTGCCCATACACTTCAAGAAGTCTATATAGAGTTGTTTGgtatgtattattatgtcctacattacatgcatagttaccagcagtcatga Alignment from Exonerate_coding2genome TGTTTGACATTGTGAGGAACTATACTGCAGACTACGACAAGACTTTAATCTTCAATAAAATCCACCATGAGCTGAACCAGTTTTGCAGTGCCCACACACTTCAAGAAGTTTACATAGAATTGTTTG aagagagggttggacttaaggtgaagcctcccaacttgattgttttgtagTGTTTGACATTGTGAGGAACTATACAGCAGGCTATGACAAAACTTTAATCTTTAATAAAATCCATCATGAACTTAACCAATTTCGTAGTGCCCATACACTTCAAGAAGTCTATATAGAGTTGTTTGgtatgtattattatgtcctacattacatgcatagttaccagcagtcatga Alignment from GeneWise TGTTTGACATTGTGAGGAACTATACTGCAGACTACGACAAGACTTTAATCTTCAATAAAATCCACCATGAGCTGAACCAGTTTTGCAGTGCCCACACACTTCAAGAAGTTTACATAGAATTGTTTG aagagagggttggacttaaggtgaagcctcccaacttgattgttttgtagTGTTTGACATTGTGAGGAACTATACAGCAGGCTATGACAAAACTTTAATCTTTAATAAAATCCATCATGAACTTAACCAATTTCGTAGTGCCCATACACTTCAAGAAGTCTATATAGAGTTGTTTGgtatgtattattatgtcctacattacatgcatagttaccagcagtcatga #### Erlin1_ID8901_3 --> 0 - 2 Original Alignment ACAACACTACAAACGGATGAAGTTAAAAATGTGCCTTGTGGAACAag agacaaaaaccccacacaggaataaatctagaatatatttctctttccagACCACACTACAGACAGATGAAGTTAAAAATGTGCCTTGTGGAACAaggtgtggcccctctgttgattcataaggccattgcaacagtacattaaaat Alignment from CESAR ACAACACTACAAACGGATGAAGTTAAAAATGTGCCTTGTGGAACAag agacaaaaaccccacacaggaataaatctagaatatatttctctttccagACCACACTACAGACAGATGAAGTTAAAAATGTGCCTTGTGGAACAaggtgtggcccctctgttgattcataaggccattgcaacagtacattaaaat Alignment from Spaln_aa2Genome ACAACACTACAAACGGATGAAGTTAAAAATGTGCCTTGTGGAACAAG agacaaaaaccccacacaggaataaatctagaatatatttctctttccagACCACACTACAGACAGATGAAGTTAAAAATGTGCCTTGTGGAACAAGgtgtggcccctctgttgattcataaggccattgcaacagtacattaaaat Alignment from Spaln_nt2Genome ACAACACTACAAACGGATGAAGTTAAAAATGTGCCTTGTGGAACAAG agacaaaaaccccacacaggaataaatctagaatatatttctctttccagACCACACTACAGACAGATGAAGTTAAAAATGTGCCTTGTGGAACAAGgtgtggcccctctgttgattcataaggccattgcaacagtacattaaaat Alignment from Pairagon ACAACACTACAAACGGATGAAGTTAAAAATGTGCCTTGTGGAACAAG agacaaaaaccccacacaggaataaatctagaatatatttctctttccagACCACACTACAGACAGATGAAGTTAAAAATGTGCCTTGTGGAACAAGgtgtggcccctctgttgattcataaggccattgcaacagtacattaaaat Alignment from Exonerate_protein2genome ACAACACTACAAACGGATGAAGTTAAAAATGTGCCTTGTGGAACAAG agacaaaaaccccacacaggaataaatctagaatatatttctctttccagACCACACTACAGACAGATGAAGTTAAAAATGTGCCTTGTGGAACAAGgtgtggcccctctgttgattcataaggccattgcaacagtacattaaaat Alignment from Exonerate_coding2genome ACAACACTACAAACGGATGAAGTTAAAAATGTGCCTTGTGGAACAAG agacaaaaaccccacacaggaataaatctagaatatatttctctttccagACCACACTACAGACAGATGAAGTTAAAAATGTGCCTTGTGGAACAAGgtgtggcccctctgttgattcataaggccattgcaacagtacattaaaat Alignment from GeneWise ACAACACTACAAACGGATGAAGTTAAAAATGTGCCTTGTGGAACAAG agacaaaaaccccacacaggaataaatctagaatatatttctctttccagACCACACTACAGACAGATGAAGTTAAAAATGTGCCTTGTGGAACAAGgtgtggcccctctgttgattcataaggccattgcaacagtacattaaaat #### Erlin1_ID8902_2 --> 1 - 0 Original Alignment gGGAGGAGCTTTGCTAACGAGCCCCAGTGGACCAGGCTATCATATCATGTTGCCTTTCATTACAACATTCAGATCTGTGCAG caaaaaccactaaaagcctaagatgagtaggccctcttgtgtctctccagaGGTGGAGCTTTGCTAATGAGCCCGAGTGGGCCAGGCTATCATATCATGTTGCCTTTTATTACAACATTTAGATCTGTGCAGgtaaacgatctccaggagtaccataacaacagaaatagtatgagtttcca Alignment from CESAR gGGAGGAGCTTTGCTAACGAGCCCCAGTGGACCAGGCTATCATATCATGTTGCCTTTCATTACAACATTCAGATCTGTGCAG caaaaaccactaaaagcctaagatgagtaggccctcttgtgtctctccagaGGTGGAGCTTTGCTAATGAGCCCGAGTGGGCCAGGCTATCATATCATGTTGCCTTTTATTACAACATTTAGATCTGTGCAGgtaaacgatctccaggagtaccataacaacagaaatagtatgagtttcca Alignment from Spaln_aa2Genome GGGAGGAGCTTTGCTAACGAGCCCCAGTGGACCAGGCTATCATATCATGTTGCCTTTCATTACAACATTCAGATCTGTGCAG caaaaaccactaaaagcctaagatgagtaggccctcttgtgtctctccagAGGTGGAGCTTTGCTAATGAGCCCGAGTGGGCCAGGCTATCATATCATGTTGCCTTTTATTACAACATTTAGATCTGTGCAGgtaaacgatctccaggagtaccataacaacagaaatagtatgagtttcca Alignment from Spaln_nt2Genome GGGAGGAGCTTTGCTAACGAGCCCCAGTGGACCAGGCTATCATATCATGTTGCCTTTCATTACAACATTCAGATCTGTGCAG caaaaaccactaaaagcctaagatgagtaggccctcttgtgtctctccagAGGTGGAGCTTTGCTAATGAGCCCGAGTGGGCCAGGCTATCATATCATGTTGCCTTTTATTACAACATTTAGATCTGTGCAGgtaaacgatctccaggagtaccataacaacagaaatagtatgagtttcca Alignment from Pairagon GGGAGGAGCTTTGCTAACGAGCCCCAGTGGACCAGGCTATCATATCATGTTGCCTTTCATTACAACATTCAGATCTGTGCAG caaaaaccactaaaagcctaagatgagtaggccctcttgtgtctctccagAGGTGGAGCTTTGCTAATGAGCCCGAGTGGGCCAGGCTATCATATCATGTTGCCTTTTATTACAACATTTAGATCTGTGCAGgtaaacgatctccaggagtaccataacaacagaaatagtatgagtttcca Alignment from Exonerate_protein2genome GGGAGGAGCTTTGCTAACGAGCCCCAGTGGACCAGGCTATCATATCATGTTGCCTTTCATTACAACATTCAGATCTGTGCAG caaaaaccactaaaagcctaagatgagtaggccctcttgtgtctctccagAGGTGGAGCTTTGCTAATGAGCCCGAGTGGGCCAGGCTATCATATCATGTTGCCTTTTATTACAACATTTAGATCTGTGCAGgtaaacgatctccaggagtaccataacaacagaaatagtatgagtttcca Alignment from Exonerate_coding2genome GGGAGGAGCTTTGCTAACGAGCCCCAGTGGACCAGGCTATCATATCATGTTGCCTTTCATTACAACATTCAGATCTGTGCAG caaaaaccactaaaagcctaagatgagtaggccctcttgtgtctctccagAGGTGGAGCTTTGCTAATGAGCCCGAGTGGGCCAGGCTATCATATCATGTTGCCTTTTATTACAACATTTAGATCTGTGCAGgtaaacgatctccaggagtaccataacaacagaaatagtatgagtttcca Alignment from GeneWise GGGAGGAGCTTTGCTAACGAGCCCCAGTGGACCAGGCTATCATATCATGTTGCCTTTCATTACAACATTCAGATCTGTGCAG caaaaaccactaaaagcctaagatgagtaggccctcttgtgtctctccagAGGTGGAGCTTTGCTAATGAGCCCGAGTGGGCCAGGCTATCATATCATGTTGCCTTTTATTACAACATTTAGATCTGTGCAGgtaaacgatctccaggagtaccataacaacagaaatagtatgagtttcca #### Ermp1_ID6316_14 --> 2 - 0 Original Alignment gaCCAAGCCATATGTCTTTCTATGTTCGAACCCACAAAGGATCAACACTTTCCCAGTGGTCTCTTGGCAACGGCATCCCAGTCACAAGCAGAGGAGGAGACTACTTTGTGTTTTATTCCCATGGACTCCAGGCTTCTGCATGGCGGTTCTGGATAGAAGTGCAG tttcaattttctgattactctgttagatccccaacaatgctgccttgcaggaCCAAGCCACATGTCTTTCTATGTGAGAACGCACAAAGGGTCAACCCTCTCTCAATGGTCTCTTGGCAATGGCATCCCAGTCACAAGCAGAGGGGGAGATTACTTTGTCTTTTATTCCCATGGACTCCATGCTTCTGCATGGCGGTTCTGGATAGAAGTACAGgtgaggcccctggtcctctggaaagtatggtacaactgtgagggccagtg Alignment from CESAR gaCCAAGCCATATGTCTTTCTATGTTCGAACCCACAAAGGATCAACACTTTCCCAGTGGTCTCTTGGCAACGGCATCCCAGTCACAAGCAGAGGAGGAGACTACTTTGTGTTTTATTCCCATGGACTCCAGGCTTCTGCATGGCGGTTCTGGATAGAAGTGCAG tttcaattttctgattactctgttagatccccaacaatgctgccttgcaggaCCAAGCCACATGTCTTTCTATGTGAGAACGCACAAAGGGTCAACCCTCTCTCAATGGTCTCTTGGCAATGGCATCCCAGTCACAAGCAGAGGGGGAGATTACTTTGTCTTTTATTCCCATGGACTCCATGCTTCTGCATGGCGGTTCTGGATAGAAGTACAGgtgaggcccctggtcctctggaaagtatggtacaactgtgagggccagtg Alignment from Spaln_aa2Genome GACCAAGCCATATGTCTTTCTATGTTCGAACCCACAAAGGATCAACACTTTCCCAGTGGTCTCTTGGCAACGGCATCCCAGTCACAAGCAGAGGAGGAGACTACTTTGTGTTTTATTCCCATGGACTCCAGGCTTCTGCATGGCGGTTCTGGATAGAAGTGCAG tttcaattttctgattactctgttagatccccaacaatgctgccttgcagGACCAAGCCACATGTCTTTCTATGTGAGAACGCACAAAGGGTCAACCCTCTCTCAATGGTCTCTTGGCAATGGCATCCCAGTCACAAGCAGAGGGGGAGATTACTTTGTCTTTTATTCCCATGGACTCCATGCTTCTGCATGGCGGTTCTGGATAGAAGTACAGgtgaggcccctggtcctctggaaagtatggtacaactgtgagggccagtg Alignment from Spaln_nt2Genome GACCAAGCCATATGTCTTTCTATGTTCGAACCCACAAAGGATCAACACTTTCCCAGTGGTCTCTTGGCAACGGCATCCCAGTCACAAGCAGAGGAGGAGACTACTTTGTGTTTTATTCCCATGGACTCCAGGCTTCTGCATGGCGGTTCTGGATAGAAGTGCAG tttcaattttctgattactctgttagatccccaacaatgctgccttgcagGACCAAGCCACATGTCTTTCTATGTGAGAACGCACAAAGGGTCAACCCTCTCTCAATGGTCTCTTGGCAATGGCATCCCAGTCACAAGCAGAGGGGGAGATTACTTTGTCTTTTATTCCCATGGACTCCATGCTTCTGCATGGCGGTTCTGGATAGAAGTACAGgtgaggcccctggtcctctggaaagtatggtacaactgtgagggccagtg Alignment from Pairagon GACCAAGCCATATGTCTTTCTATGTTCGAACCCACAAAGGATCAACACTTTCCCAGTGGTCTCTTGGCAACGGCATCCCAGTCACAAGCAGAGGAGGAGACTACTTTGTGTTTTATTCCCATGGACTCCAGGCTTCTGCATGGCGGTTCTGGATAGAAGTGCAG tttcaattttctgattactctgttagatccccaacaatgctgccttgcagGACCAAGCCACATGTCTTTCTATGTGAGAACGCACAAAGGGTCAACCCTCTCTCAATGGTCTCTTGGCAATGGCATCCCAGTCACAAGCAGAGGGGGAGATTACTTTGTCTTTTATTCCCATGGACTCCATGCTTCTGCATGGCGGTTCTGGATAGAAGTACAGgtgaggcccctggtcctctggaaagtatggtacaactgtgagggccagtg Alignment from Exonerate_protein2genome GACCAAGCCATATGTCTTTCTATGTTCGAACCCACAAAGGATCAACACTTTCCCAGTGGTCTCTTGGCAACGGCATCCCAGTCACAAGCAGAGGAGGAGACTACTTTGTGTTTTATTCCCATGGACTCCAGGCTTCTGCATGGCGGTTCTGGATAGAAGTGCAG tttcaattttctgattactctgttagatccccaacaatgctgccttgcagGACCAAGCCACATGTCTTTCTATGTGAGAACGCACAAAGGGTCAACCCTCTCTCAATGGTCTCTTGGCAATGGCATCCCAGTCACAAGCAGAGGGGGAGATTACTTTGTCTTTTATTCCCATGGACTCCATGCTTCTGCATGGCGGTTCTGGATAGAAGTACAGgtgaggcccctggtcctctggaaagtatggtacaactgtgagggccagtg Alignment from Exonerate_coding2genome GACCAAGCCATATGTCTTTCTATGTTCGAACCCACAAAGGATCAACACTTTCCCAGTGGTCTCTTGGCAACGGCATCCCAGTCACAAGCAGAGGAGGAGACTACTTTGTGTTTTATTCCCATGGACTCCAGGCTTCTGCATGGCGGTTCTGGATAGAAGTGCAG tttcaattttctgattactctgttagatccccaacaatgctgccttgcagGACCAAGCCACATGTCTTTCTATGTGAGAACGCACAAAGGGTCAACCCTCTCTCAATGGTCTCTTGGCAATGGCATCCCAGTCACAAGCAGAGGGGGAGATTACTTTGTCTTTTATTCCCATGGACTCCATGCTTCTGCATGGCGGTTCTGGATAGAAGTACAGgtgaggcccctggtcctctggaaagtatggtacaactgtgagggccagtg Alignment from GeneWise GACCAAGCCATATGTCTTTCTATGTTCGAACCCACAAAGGATCAACACTTTCCCAGTGGTCTCTTGGCAACGGCATCCCAGTCACAAGCAGAGGAGGAGACTACTTTGTGTTTTATTCCCATGGACTCCAGGCTTCTGCATGGCGGTTCTGGATAGAAGTGCAG tttcaattttctgattactctgttagatccccaacaatgctgccttgcagGACCAAGCCACATGTCTTTCTATGTGAGAACGCACAAAGGGTCAACCCTCTCTCAATGGTCTCTTGGCAATGGCATCCCAGTCACAAGCAGAGGGGGAGATTACTTTGTCTTTTATTCCCATGGACTCCATGCTTCTGCATGGCGGTTCTGGATAGAAGTACAGgtgaggcccctggtcctctggaaagtatggtacaactgtgagggccagtg #### Ermp1_ID6320_10 --> 2 - 0 Original Alignment gtGCCCAAGGAAGATTTGTTGCTCTGTACCTTTTGGGGATGTTTATCCCATATCTTTACGGGCTCTACCTCATCTGGGCTGTGTTTGAGATGTTCACTCCTATCCTGGGAAGAAGCGGGTCGGAGATCCCCCCCGACGTTGTGCTGGCCTCCATCCTGGCTGTCTGTGTGATGATCCTCTCTTCCTATTTT cagcccagcaatgtaccctgtacctgatgatgcttctctttgtgccccaggtGCTCAAGGAAGATTTGTCACCCTGTACCTGTTAGGCATGTCCATCCCTTACCTTTATGGCCTATACCTGATCTGGGCTGTGTTTGAGATGTTTACTCCCATCCTAGGTAGAAGTGGTTCAGAGATCCCACCAGGTGTATTATCAGCCTCTGTCTTAGCTGTCTGCGTGACAGTCTTATCTTCATACTTTgtgagtagttgggagtgcgttgtcacattatacttatttgccttcttcct Alignment from CESAR gtGCCCAAGGAAGATTTGTTGCTCTGTACCTTTTGGGGATGTTTATCCCATATCTTTACGGGCTCTACCTCATCTGGGCTGTGTTTGAGATGTTCACTCCTATCCTGGGAAGAAGCGGGTCGGAGATCCCCCCCGACGTTGTGCTGGCCTCCATCCTGGCTGTCTGTGTGATGATCCTCTCTTCCTATTTT cagcccagcaatgtaccctgtacctgatgatgcttctctttgtgccccaggtGCTCAAGGAAGATTTGTCACCCTGTACCTGTTAGGCATGTCCATCCCTTACCTTTATGGCCTATACCTGATCTGGGCTGTGTTTGAGATGTTTACTCCCATCCTAGGTAGAAGTGGTTCAGAGATCCCACCAGGTGTATTATCAGCCTCTGTCTTAGCTGTCTGCGTGACAGTCTTATCTTCATACTTTgtgagtagttgggagtgcgttgtcacattatacttatttgccttcttcct Alignment from Spaln_aa2Genome GTGCCCAAGGAAGATTTGTTGCTCTGTACCTTTTGGGGATGTTTATCCCATATCTTTACGGGCTCTACCTCATCTGGGCTGTGTTTGAGATGTTCACTCCTATCCTGGGAAGAAGCGGGTCGGAGATCCCCCCCGACGTTGTGCTGGCCTCCATCCTGGCTGTCTGTGTGATGATCCTCTCTTCCTATTTT cagcccagcaatgtaccctgtacctgatgatgcttctctttgtgccccagGTGCTCAAGGAAGATTTGTCACCCTGTACCTGTTAGGCATGTCCATCCCTTACCTTTATGGCCTATACCTGATCTGGGCTGTGTTTGAGATGTTTACTCCCATCCTAGGTAGAAGTGGTTCAGAGATCCCACCAGGTGTATTATCAGCCTCTGTCTTAGCTGTCTGCGTGACAGTCTTATCTTCATACTTTgtgagtagttgggagtgcgttgtcacattatacttatttgccttcttcct Alignment from Spaln_nt2Genome GTGCCCAAGGAAGATTTGTTGCTCTGTACCTTTTGGGGATGTTTATCCCATATCTTTACGGGCTCTACCTCATCTGGGCTGTGTTTGAGATGTTCACTCCTATCCTGGGAAGAAGCGGGTCGGAGATCCCCCCCGACGTTGTGCTGGCCTCCATCCTGGCTGTCTGTGTGATGATCCTCTCTTCCTATTTT cagcccagcaatgtaccctgtacctgatgatgcttctctttgtgccccagGTGCTCAAGGAAGATTTGTCACCCTGTACCTGTTAGGCATGTCCATCCCTTACCTTTATGGCCTATACCTGATCTGGGCTGTGTTTGAGATGTTTACTCCCATCCTAGGTAGAAGTGGTTCAGAGATCCCACCAGGTGTATTATCAGCCTCTGTCTTAGCTGTCTGCGTGACAGTCTTATCTTCATACTTTgtgagtagttgggagtgcgttgtcacattatacttatttgccttcttcct Alignment from Pairagon GTGCCCAAGGAAGATTTGTTGCTCTGTACCTTTTGGGGATGTTTATCCCATATCTTTACGGGCTCTACCTCATCTGGGCTGTGTTTGAGATGTTCACTCCTATCCTGGGAAGAAGCGGGTCGGAGATCCCCCCCGACGTTGTGCTGGCCTCCATCCTGGCTGTCTGTGTGATGATCCTCTCTTCCTATTTT cagcccagcaatgtaccctgtacctgatgatgcttctctttgtgccccagGTGCTCAAGGAAGATTTGTCACCCTGTACCTGTTAGGCATGTCCATCCCTTACCTTTATGGCCTATACCTGATCTGGGCTGTGTTTGAGATGTTTACTCCCATCCTAGGTAGAAGTGGTTCAGAGATCCCACCAGGTGTATTATCAGCCTCTGTCTTAGCTGTCTGCGTGACAGTCTTATCTTCATACTTTgtgagtagttgggagtgcgttgtcacattatacttatttgccttcttcct Alignment from Exonerate_protein2genome GTGCCCAAGGAAGATTTGTTGCTCTGTACCTTTTGGGGATGTTTATCCCATATCTTTACGGGCTCTACCTCATCTGGGCTGTGTTTGAGATGTTCACTCCTATCCTGGGAAGAAGCGGGTCGGAGATCCCCCCCGACGTTGTGCTGGCCTCCATCCTGGCTGTCTGTGTGATGATCCTCTCTTCCTATTTT cagcccagcaatgtaccctgtacctgatgatgcttctctttgtgccccagGTGCTCAAGGAAGATTTGTCACCCTGTACCTGTTAGGCATGTCCATCCCTTACCTTTATGGCCTATACCTGATCTGGGCTGTGTTTGAGATGTTTACTCCCATCCTAGGTAGAAGTGGTTCAGAGATCCCACCAGGTGTATTATCAGCCTCTGTCTTAGCTGTCTGCGTGACAGTCTTATCTTCATACTTTgtgagtagttgggagtgcgttgtcacattatacttatttgccttcttcct Alignment from Exonerate_coding2genome GTGCCCAAGGAAGATTTGTTGCTCTGTACCTTTTGGGGATGTTTATCCCATATCTTTACGGGCTCTACCTCATCTGGGCTGTGTTTGAGATGTTCACTCCTATCCTGGGAAGAAGCGGGTCGGAGATCCCCCCCGACGTTGTGCTGGCCTCCATCCTGGCTGTCTGTGTGATGATCCTCTCTTCCTATTTT cagcccagcaatgtaccctgtacctgatgatgcttctctttgtgccccagGTGCTCAAGGAAGATTTGTCACCCTGTACCTGTTAGGCATGTCCATCCCTTACCTTTATGGCCTATACCTGATCTGGGCTGTGTTTGAGATGTTTACTCCCATCCTAGGTAGAAGTGGTTCAGAGATCCCACCAGGTGTATTATCAGCCTCTGTCTTAGCTGTCTGCGTGACAGTCTTATCTTCATACTTTgtgagtagttgggagtgcgttgtcacattatacttatttgccttcttcct Alignment from GeneWise GTGCCCAAGGAAGATTTGTTGCTCTGTACCTTTTGGGGATGTTTATCCCATATCTTTACGGGCTCTACCTCATCTGGGCTGTGTTTGAGATGTTCACTCCTATCCTGGGAAGAAGCGGGTCGGAGATCCCCCCCGACGTTGTGCTGGCCTCCATCCTGGCTGTCTGTGTGATGATCCTCTCTTCCTATTTT cagcccagcaatgtaccctgtacctgatgatgcttctctttgtgccccagGTGCTCAAGGAAGATTTGTCACCCTGTACCTGTTAGGCATGTCCATCCCTTACCTTTATGGCCTATACCTGATCTGGGCTGTGTTTGAGATGTTTACTCCCATCCTAGGTAGAAGTGGTTCAGAGATCCCACCAGGTGTATTATCAGCCTCTGTCTTAGCTGTCTGCGTGACAGTCTTATCTTCATACTTTgtgagtagttgggagtgcgttgtcacattatacttatttgccttcttcct #### Ermp1_ID6324_6 --> 2 - 1 Original Alignment gaATAGACTTAGCTTTTATTGAAAATGGATACATCTATCACACCAAGTATGACACAGCGGACAGGATTCTCATAGATTCCATTCAGAGAGCAg gcaccagtctactcctcaaaactggatgtactctgtgtgttccttggcaggaATCGATTTAGCTTTCATTGAGAATGGATACATCTATCACACAAAGTATGACACAGCAGATAGGATTCTCATAGATTCCATTCAGAAAACAggtgtgttttcaccgttttggctccagctatgtaaagactctatagtctgg Alignment from CESAR gaATAGACTTAGCTTTTATTGAAAATGGATACATCTATCACACCAAGTATGACACAGCGGACAGGATTCTCATAGATTCCATTCAGAGAGCAg gcaccagtctactcctcaaaactggatgtactctgtgtgttccttggcaggaATCGATTTAGCTTTCATTGAGAATGGATACATCTATCACACAAAGTATGACACAGCAGATAGGATTCTCATAGATTCCATTCAGAAAACAggtgtgttttcaccgttttggctccagctatgtaaagactctatagtctgg Alignment from Spaln_aa2Genome GAATAGACTTAGCTTTTATTGAAAATGGATACATCTATCACACCAAGTATGACACAGCGGACAGGATTCTCATAGATTCCATTCAGAGAGCAG gcaccagtctactcctcaaaactggatgtactctgtgtgttccttggcagGAATCGATTTAGCTTTCATTGAGAATGGATACATCTATCACACAAAGTATGACACAGCAGATAGGATTCTCATAGATTCCATTCAGAAAACAGgtgtgttttcaccgttttggctccagctatgtaaagactctatagtctgg Alignment from Spaln_nt2Genome GAATAGACTTAGCTTTTATTGAAAATGGATACATCTATCACACCAAGTATGACACAGCGGACAGGATTCTCATAGATTCCATTCAGAGAGCAG gcaccagtctactcctcaaaactggatgtactctgtgtgttccttggcagGAATCGATTTAGCTTTCATTGAGAATGGATACATCTATCACACAAAGTATGACACAGCAGATAGGATTCTCATAGATTCCATTCAGAAAACAGgtgtgttttcaccgttttggctccagctatgtaaagactctatagtctgg Alignment from Pairagon GAATAGACTTAGCTTTTATTGAAAATGGATACATCTATCACACCAAGTATGACACAGCGGACAGGATTCTCATAGATTCCATTCAGAGAGCAG gcaccagtctactcctcaaaactggatgtactctgtgtgttccttggcagGAATCGATTTAGCTTTCATTGAGAATGGATACATCTATCACACAAAGTATGACACAGCAGATAGGATTCTCATAGATTCCATTCAGAAAACAGgtgtgttttcaccgttttggctccagctatgtaaagactctatagtctgg Alignment from Exonerate_protein2genome GAATAGACTTAGCTTTTATTGAAAATGGATACATCTATCACACCAAGTATGACACAGCGGACAGGATTCTCATAGATTCCATTCAGAGAGCAG gcaccagtctactcctcaaaactggatgtactctgtgtgttccttggcagGAATCGATTTAGCTTTCATTGAGAATGGATACATCTATCACACAAAGTATGACACAGCAGATAGGATTCTCATAGATTCCATTCAGAAAACAGgtgtgttttcaccgttttggctccagctatgtaaagactctatagtctgg Alignment from Exonerate_coding2genome GAATAGACTTAGCTTTTATTGAAAATGGATACATCTATCACACCAAGTATGACACAGCGGACAGGATTCTCATAGATTCCATTCAGAGAGCAG gcaccagtctactcctcaaaactggatgtactctgtgtgttccttggcagGAATCGATTTAGCTTTCATTGAGAATGGATACATCTATCACACAAAGTATGACACAGCAGATAGGATTCTCATAGATTCCATTCAGAAAACAGgtgtgttttcaccgttttggctccagctatgtaaagactctatagtctgg Alignment from GeneWise GAATAGACTTAGCTTTTATTGAAAATGGATACATCTATCACACCAAGTATGACACAGCGGACAGGATTCTCATAGATTCCATTCAGAGAGCAG gcaccagtctactcctcaaaactggatgtactctgtgtgttccttggcagGAATCGATTTAGCTTTCATTGAGAATGGATACATCTATCACACAAAGTATGACACAGCAGATAGGATTCTCATAGATTCCATTCAGAAAACAGgtgtgttttcaccgttttggctccagctatgtaaagactctatagtctgg #### Ermp1_ID6328_2 --> 1 - 1 Original Alignment gGATTATCTGGAACACATAACGGCCATTGGCCCCAGGACTACAGGAAGCACAGAAAATGAAATTCTGACGGTACAGTACCTTTTGGAGCAGATCAAGCTGATAGAAGCACAAAGCAACAGCCTTCACAGCATCTCCGTAGATATACAGCGGCCCACCGGTTCCTTTAGCATTGACTTCTTGGGGGGCTTCACGAGCTACTATGACAACATTACTAATGTCGTGGTAAAGCTGGAGCCCCGGGATGGAGCCGAGTCTGCTATCCTGGCTAACTGTCACTTTGACTCAGTGGCAAATTCACCAg ggttcccaaacttaatatgaaagtatcctaatgattttgtaactttctaggGATTATCTAGAACACATAACAGCCATTGGCCCCAGAACTACAGGGAGCACAGAAAATGAAATTCTGACGGTACAGTACCTTTTGGAACAGATCAAGTTGATAGAAGCACAAAGCAACAGTCTTCACAGCATCTCTGTGGATATACAGCGGCCCACGGGGTCCTTCAGCATTGACTTCTTGGGGGGTTACACCAGCTATTATGACAACCTAACTAATGTTGTAGTAAAGCTGGAGCCTCGGGATGGAGCCAAGTCTGCCATCCTGGCTAACTGTCACTTTGACTCAGTGGCAAACTCACCAggtaaagaccagctatcatactgaatgggtgtaagtgttcccttcaaagct Alignment from CESAR gGATTATCTGGAACACATAACGGCCATTGGCCCCAGGACTACAGGAAGCACAGAAAATGAAATTCTGACGGTACAGTACCTTTTGGAGCAGATCAAGCTGATAGAAGCACAAAGCAACAGCCTTCACAGCATCTCCGTAGATATACAGCGGCCCACCGGTTCCTTTAGCATTGACTTCTTGGGGGGCTTCACGAGCTACTATGACAACATTACTAATGTCGTGGTAAAGCTGGAGCCCCGGGATGGAGCCGAGTCTGCTATCCTGGCTAACTGTCACTTTGACTCAGTGGCAAATTCACCAg ggttcccaaacttaatatgaaagtatcctaatgattttgtaactttctaggGATTATCTAGAACACATAACAGCCATTGGCCCCAGAACTACAGGGAGCACAGAAAATGAAATTCTGACGGTACAGTACCTTTTGGAACAGATCAAGTTGATAGAAGCACAAAGCAACAGTCTTCACAGCATCTCTGTGGATATACAGCGGCCCACGGGGTCCTTCAGCATTGACTTCTTGGGGGGTTACACCAGCTATTATGACAACCTAACTAATGTTGTAGTAAAGCTGGAGCCTCGGGATGGAGCCAAGTCTGCCATCCTGGCTAACTGTCACTTTGACTCAGTGGCAAACTCACCAggtaaagaccagctatcatactgaatgggtgtaagtgttcccttcaaagct Alignment from Spaln_aa2Genome GGATTATCTGGAACACATAACGGCCATTGGCCCCAGGACTACAGGAAGCACAGAAAATGAAATTCTGACGGTACAGTACCTTTTGGAGCAGATCAAGCTGATAGAAGCACAAAGCAACAGCCTTCACAGCATCTCCGTAGATATACAGCGGCCCACCGGTTCCTTTAGCATTGACTTCTTGGGGGGCTTCACGAGCTACTATGACAACATTACTAATGTCGTGGTAAAGCTGGAGCCCCGGGATGGAGCCGAGTCTGCTATCCTGGCTAACTGTCACTTTGACTCAGTGGCAAATTCACCAG ggttcccaaacttaatatgaaagtatcctaatgattttgtaactttctagGGATTATCTAGAACACATAACAGCCATTGGCCCCAGAACTACAGGGAGCACAGAAAATGAAATTCTGACGGTACAGTACCTTTTGGAACAGATCAAGTTGATAGAAGCACAAAGCAACAGTCTTCACAGCATCTCTGTGGATATACAGCGGCCCACGGGGTCCTTCAGCATTGACTTCTTGGGGGGTTACACCAGCTATTATGACAACCTAACTAATGTTGTAGTAAAGCTGGAGCCTCGGGATGGAGCCAAGTCTGCCATCCTGGCTAACTGTCACTTTGACTCAGTGGCAAACTCACCAGgtaaagaccagctatcatactgaatgggtgtaagtgttcccttcaaagct Alignment from Spaln_nt2Genome GGATTATCTGGAACACATAACGGCCATTGGCCCCAGGACTACAGGAAGCACAGAAAATGAAATTCTGACGGTACAGTACCTTTTGGAGCAGATCAAGCTGATAGAAGCACAAAGCAACAGCCTTCACAGCATCTCCGTAGATATACAGCGGCCCACCGGTTCCTTTAGCATTGACTTCTTGGGGGGCTTCACGAGCTACTATGACAACATTACTAATGTCGTGGTAAAGCTGGAGCCCCGGGATGGAGCCGAGTCTGCTATCCTGGCTAACTGTCACTTTGACTCAGTGGCAAATTCACCAG ggttcccaaacttaatatgaaagtatcctaatgattttgtaactttctagGGATTATCTAGAACACATAACAGCCATTGGCCCCAGAACTACAGGGAGCACAGAAAATGAAATTCTGACGGTACAGTACCTTTTGGAACAGATCAAGTTGATAGAAGCACAAAGCAACAGTCTTCACAGCATCTCTGTGGATATACAGCGGCCCACGGGGTCCTTCAGCATTGACTTCTTGGGGGGTTACACCAGCTATTATGACAACCTAACTAATGTTGTAGTAAAGCTGGAGCCTCGGGATGGAGCCAAGTCTGCCATCCTGGCTAACTGTCACTTTGACTCAGTGGCAAACTCACCAGgtaaagaccagctatcatactgaatgggtgtaagtgttcccttcaaagct Alignment from Pairagon GGATTATCTGGAACACATAACGGCCATTGGCCCCAGGACTACAGGAAGCACAGAAAATGAAATTCTGACGGTACAGTACCTTTTGGAGCAGATCAAGCTGATAGAAGCACAAAGCAACAGCCTTCACAGCATCTCCGTAGATATACAGCGGCCCACCGGTTCCTTTAGCATTGACTTCTTGGGGGGCTTCACGAGCTACTATGACAACATTACTAATGTCGTGGTAAAGCTGGAGCCCCGGGATGGAGCCGAGTCTGCTATCCTGGCTAACTGTCACTTTGACTCAGTGGCAAATTCACCAG ggttcccaaacttaatatgaaagtatcctaatgattttgtaactttctagGGATTATCTAGAACACATAACAGCCATTGGCCCCAGAACTACAGGGAGCACAGAAAATGAAATTCTGACGGTACAGTACCTTTTGGAACAGATCAAGTTGATAGAAGCACAAAGCAACAGTCTTCACAGCATCTCTGTGGATATACAGCGGCCCACGGGGTCCTTCAGCATTGACTTCTTGGGGGGTTACACCAGCTATTATGACAACCTAACTAATGTTGTAGTAAAGCTGGAGCCTCGGGATGGAGCCAAGTCTGCCATCCTGGCTAACTGTCACTTTGACTCAGTGGCAAACTCACCAGgtaaagaccagctatcatactgaatgggtgtaagtgttcccttcaaagct Alignment from Exonerate_protein2genome GGATTATCTGGAACACATAACGGCCATTGGCCCCAGGACTACAGGAAGCACAGAAAATGAAATTCTGACGGTACAGTACCTTTTGGAGCAGATCAAGCTGATAGAAGCACAAAGCAACAGCCTTCACAGCATCTCCGTAGATATACAGCGGCCCACCGGTTCCTTTAGCATTGACTTCTTGGGGGGCTTCACGAGCTACTATGACAACATTACTAATGTCGTGGTAAAGCTGGAGCCCCGGGATGGAGCCGAGTCTGCTATCCTGGCTAACTGTCACTTTGACTCAGTGGCAAATTCACCAG ggttcccaaacttaatatgaaagtatcctaatgattttgtaactttctagGGATTATCTAGAACACATAACAGCCATTGGCCCCAGAACTACAGGGAGCACAGAAAATGAAATTCTGACGGTACAGTACCTTTTGGAACAGATCAAGTTGATAGAAGCACAAAGCAACAGTCTTCACAGCATCTCTGTGGATATACAGCGGCCCACGGGGTCCTTCAGCATTGACTTCTTGGGGGGTTACACCAGCTATTATGACAACCTAACTAATGTTGTAGTAAAGCTGGAGCCTCGGGATGGAGCCAAGTCTGCCATCCTGGCTAACTGTCACTTTGACTCAGTGGCAAACTCACCAGgtaaagaccagctatcatactgaatgggtgtaagtgttcccttcaaagct Alignment from Exonerate_coding2genome GGATTATCTGGAACACATAACGGCCATTGGCCCCAGGACTACAGGAAGCACAGAAAATGAAATTCTGACGGTACAGTACCTTTTGGAGCAGATCAAGCTGATAGAAGCACAAAGCAACAGCCTTCACAGCATCTCCGTAGATATACAGCGGCCCACCGGTTCCTTTAGCATTGACTTCTTGGGGGGCTTCACGAGCTACTATGACAACATTACTAATGTCGTGGTAAAGCTGGAGCCCCGGGATGGAGCCGAGTCTGCTATCCTGGCTAACTGTCACTTTGACTCAGTGGCAAATTCACCAG ggttcccaaacttaatatgaaagtatcctaatgattttgtaactttctagGGATTATCTAGAACACATAACAGCCATTGGCCCCAGAACTACAGGGAGCACAGAAAATGAAATTCTGACGGTACAGTACCTTTTGGAACAGATCAAGTTGATAGAAGCACAAAGCAACAGTCTTCACAGCATCTCTGTGGATATACAGCGGCCCACGGGGTCCTTCAGCATTGACTTCTTGGGGGGTTACACCAGCTATTATGACAACCTAACTAATGTTGTAGTAAAGCTGGAGCCTCGGGATGGAGCCAAGTCTGCCATCCTGGCTAACTGTCACTTTGACTCAGTGGCAAACTCACCAGgtaaagaccagctatcatactgaatgggtgtaagtgttcccttcaaagct Alignment from GeneWise GGATTATCTGGAACACATAACGGCCATTGGCCCCAGGACTACAGGAAGCACAGAAAATGAAATTCTGACGGTACAGTACCTTTTGGAGCAGATCAAGCTGATAGAAGCACAAAGCAACAGCCTTCACAGCATCTCCGTAGATATACAGCGGCCCACCGGTTCCTTTAGCATTGACTTCTTGGGGGGCTTCACGAGCTACTATGACAACATTACTAATGTCGTGGTAAAGCTGGAGCCCCGGGATGGAGCCGAGTCTGCTATCCTGGCTAACTGTCACTTTGACTCAGTGGCAAATTCACCAG ggttcccaaacttaatatgaaagtatcctaatgattttgtaactttctagGGATTATCTAGAACACATAACAGCCATTGGCCCCAGAACTACAGGGAGCACAGAAAATGAAATTCTGACGGTACAGTACCTTTTGGAACAGATCAAGTTGATAGAAGCACAAAGCAACAGTCTTCACAGCATCTCTGTGGATATACAGCGGCCCACGGGGTCCTTCAGCATTGACTTCTTGGGGGGTTACACCAGCTATTATGACAACCTAACTAATGTTGTAGTAAAGCTGGAGCCTCGGGATGGAGCCAAGTCTGCCATCCTGGCTAACTGTCACTTTGACTCAGTGGCAAACTCACCAGgtaaagaccagctatcatactgaatgggtgtaagtgttcccttcaaagct #### Exoc6_ID7374_12 --> 0 - 0 Original Alignment TCTTACTGCACTGACCCTGACCTTGTTCTGGAGCTGAAGAATCTCATCGTAATTTTTGCAGACACTCTGCAG ggcttaaacatcgctcaggagtaaggaactctctctctctctctctccagTCTTACTGCACGGACCCTGACCTTGTACTGGATTTAAAGAATCTCATTGTTATTTTTGCAGACACTTTGCAGgtgagctactatcatcccttccattttccccttggtgatatcctcagtga Alignment from CESAR TCTTACTGCACTGACCCTGACCTTGTTCTGGAGCTGAAGAATCTCATCGTAATTTTTGCAGACACTCTGCAG ggcttaaacatcgctcaggagtaaggaactctctctctctctctctccagTCTTACTGCACGGACCCTGACCTTGTACTGGATTTAAAGAATCTCATTGTTATTTTTGCAGACACTTTGCAGgtgagctactatcatcccttccattttccccttggtgatatcctcagtga Alignment from Spaln_aa2Genome TCTTACTGCACTGACCCTGACCTTGTTCTGGAGCTGAAGAATCTCATCGTAATTTTTGCAGACACTCTGCAG ggcttaaacatcgctcaggagtaaggaactctctctctctctctctccagTCTTACTGCACGGACCCTGACCTTGTACTGGATTTAAAGAATCTCATTGTTATTTTTGCAGACACTTTGCAGgtgagctactatcatcccttccattttccccttggtgatatcctcagtga Alignment from Spaln_nt2Genome TCTTACTGCACTGACCCTGACCTTGTTCTGGAGCTGAAGAATCTCATCGTAATTTTTGCAGACACTCTGCAG ggcttaaacatcgctcaggagtaaggaactctctctctctctctctccagTCTTACTGCACGGACCCTGACCTTGTACTGGATTTAAAGAATCTCATTGTTATTTTTGCAGACACTTTGCAGgtgagctactatcatcccttccattttccccttggtgatatcctcagtga Alignment from Pairagon TCTTACTGCACTGACCCTGACCTTGTTCTGGAGCTGAAGAATCTCATCGTAATTTTTGCAGACACTCTGCAG ggcttaaacatcgctcaggagtaaggaactctctctctctctctctccagTCTTACTGCACGGACCCTGACCTTGTACTGGATTTAAAGAATCTCATTGTTATTTTTGCAGACACTTTGCAGgtgagctactatcatcccttccattttccccttggtgatatcctcagtga Alignment from Exonerate_protein2genome TCTTACTGCACTGACCCTGACCTTGTTCTGGAGCTGAAGAATCTCATCGTAATTTTTGCAGACACTCTGCAG ggcttaaacatcgctcaggagtaaggaactctctctctctctctctccagTCTTACTGCACGGACCCTGACCTTGTACTGGATTTAAAGAATCTCATTGTTATTTTTGCAGACACTTTGCAGgtgagctactatcatcccttccattttccccttggtgatatcctcagtga Alignment from Exonerate_coding2genome TCTTACTGCACTGACCCTGACCTTGTTCTGGAGCTGAAGAATCTCATCGTAATTTTTGCAGACACTCTGCAG ggcttaaacatcgctcaggagtaaggaactctctctctctctctctccagTCTTACTGCACGGACCCTGACCTTGTACTGGATTTAAAGAATCTCATTGTTATTTTTGCAGACACTTTGCAGgtgagctactatcatcccttccattttccccttggtgatatcctcagtga Alignment from GeneWise TCTTACTGCACTGACCCTGACCTTGTTCTGGAGCTGAAGAATCTCATCGTAATTTTTGCAGACACTCTGCAG ggcttaaacatcgctcaggagtaaggaactctctctctctctctctccagTCTTACTGCACGGACCCTGACCTTGTACTGGATTTAAAGAATCTCATTGTTATTTTTGCAGACACTTTGCAGgtgagctactatcatcccttccattttccccttggtgatatcctcagtga #### Exoc6_ID7400_21 --> 0 - 2 Original Alignment CTCCTTGACCTGTTTATGGTTTGGGATTGGTCTACTTACCTGGCTGACTATGGGCAGCCGGCTTCCAAGTACCTCCGAGTGAACCCACACGCAGCCCTCACTCTTTTGGAGaa gataagggaatgctgtttaatctaagaggtcttgcatctgtcttttctagCTCCTTGACCTGTTTATGATTTGGGATTGGACATCGTATCTACCAGACTATGGACAGCCAGCTTCTAAATATCTACGAGTCAACCCACATGCAGCACTCACCCTGCTGGAAaagtaagtatattttcagaacatctttttatgagctaatttggctaagatct Alignment from CESAR CTCCTTGACCTGTTTATGGTTTGGGATTGGTCTACTTACCTGGCTGACTATGGGCAGCCGGCTTCCAAGTACCTCCGAGTGAACCCACACGCAGCCCTCACTCTTTTGGAGaa gataagggaatgctgtttaatctaagaggtcttgcatctgtcttttctagCTCCTTGACCTGTTTATGATTTGGGATTGGACATCGTATCTACCAGACTATGGACAGCCAGCTTCTAAATATCTACGAGTCAACCCACATGCAGCACTCACCCTGCTGGAAaagtaagtatattttcagaacatctttttatgagctaatttggctaagatct Alignment from Spaln_aa2Genome CTCCTTGACCTGTTTATGGTTTGGGATTGGTCTACTTACCTGGCTGACTATGGGCAGCCGGCTTCCAAGTACCTCCGAGTGAACCCACACGCAGCCCTCACTCTTTTGGAGAA gataagggaatgctgtttaatctaagaggtcttgcatctgtcttttctagCTCCTTGACCTGTTTATGATTTGGGATTGGACATCGTATCTACCAGACTATGGACAGCCAGCTTCTAAATATCTACGAGTCAACCCACATGCAGCACTCACCCTGCTGGAAAAgtaagtatattttcagaacatctttttatgagctaatttggctaagatct Alignment from Spaln_nt2Genome CTCCTTGACCTGTTTATGGTTTGGGATTGGTCTACTTACCTGGCTGACTATGGGCAGCCGGCTTCCAAGTACCTCCGAGTGAACCCACACGCAGCCCTCACTCTTTTGGAGAA gataagggaatgctgtttaatctaagaggtcttgcatctgtcttttctagCTCCTTGACCTGTTTATGATTTGGGATTGGACATCGTATCTACCAGACTATGGACAGCCAGCTTCTAAATATCTACGAGTCAACCCACATGCAGCACTCACCCTGCTGGAAAAgtaagtatattttcagaacatctttttatgagctaatttggctaagatct Alignment from Pairagon CTCCTTGACCTGTTTATGGTTTGGGATTGGTCTACTTACCTGGCTGACTATGGGCAGCCGGCTTCCAAGTACCTCCGAGTGAACCCACACGCAGCCCTCACTCTTTTGGAGAA gataagggaatgctgtttaatctaagaggtcttgcatctgtcttttctagCTCCTTGACCTGTTTATGATTTGGGATTGGACATCGTATCTACCAGACTATGGACAGCCAGCTTCTAAATATCTACGAGTCAACCCACATGCAGCACTCACCCTGCTGGAAAAgtaagtatattttcagaacatctttttatgagctaatttggctaagatct Alignment from Exonerate_protein2genome CTCCTTGACCTGTTTATGGTTTGGGATTGGTCTACTTACCTGGCTGACTATGGGCAGCCGGCTTCCAAGTACCTCCGAGTGAACCCACACGCAGCCCTCACTCTTTTGGAGAA gataagggaatgctgtttaatctaagaggtcttgcatctgtcttttctagCTCCTTGACCTGTTTATGATTTGGGATTGGACATCGTATCTACCAGACTATGGACAGCCAGCTTCTAAATATCTACGAGTCAACCCACATGCAGCACTCACCCTGCTGGAAAAgtaagtatattttcagaacatctttttatgagctaatttggctaagatct Alignment from Exonerate_coding2genome CTCCTTGACCTGTTTATGGTTTGGGATTGGTCTACTTACCTGGCTGACTATGGGCAGCCGGCTTCCAAGTACCTCCGAGTGAACCCACACGCAGCCCTCACTCTTTTGGAGAA gataagggaatgctgtttaatctaagaggtcttgcatctgtcttttctagCTCCTTGACCTGTTTATGATTTGGGATTGGACATCGTATCTACCAGACTATGGACAGCCAGCTTCTAAATATCTACGAGTCAACCCACATGCAGCACTCACCCTGCTGGAAAAgtaagtatattttcagaacatctttttatgagctaatttggctaagatct Alignment from GeneWise CTCCTTGACCTGTTTATGGTTTGGGATTGGTCTACTTACCTGGCTGACTATGGGCAGCCGGCTTCCAAGTACCTCCGAGTGAACCCACACGCAGCCCTCACTCTTTTGGAGAA gataagggaatgctgtttaatctaagaggtcttgcatctgtcttttctagCTCCTTGACCTGTTTATGATTTGGGATTGGACATCGTATCTACCAGACTATGGACAGCCAGCTTCTAAATATCTACGAGTCAACCCACATGCAGCACTCACCCTGCTGGAAAAgtaagtatattttcagaacatctttttatgagctaatttggctaagatct #### Exosc1_ID8332_7 --> 0 - 1 Original Alignment ATCTCCCTAGGCGATGCACAGTCCAATTACCTGCTGACTACT---GCTGAAAACGAGCTGGGCGTTGTGGTGGCCCACAGTGAGTCAg taatggttgtctaagaagggccaaaaacaattcttagatttatttttcagATATCACTAGGGGCTGCACAGTCCAATTATCTGTTGACCACTGCTGCTGAAAATGAGCTGGGTGTTGTGGTGGCCCACAGTGAGTCAggtcaggttgttactaaatttgctgtcctgggaaggtgggcaacacacaat Alignment from CESAR ATCTCCCTAGGCGATGCACAGTCCAATTACCTGCTGACTACT---GCTGAAAACGAGCTGGGCGTTGTGGTGGCCCACAGTGAGTCAg taatggttgtctaagaagggccaaaaacaattcttagatttatttttcagATATCACTAGGGGCTGCACAGTCCAATTATCTGTTGACCACTGCTGCTGAAAATGAGCTGGGTGTTGTGGTGGCCCACAGTGAGTCAggtcaggttgttactaaatttgctgtcctgggaaggtgggcaacacacaat Alignment from Spaln_aa2Genome ATCTCCCTAGGCGATGCACAGTCCAATTACCTGCTGACTACT---GCTGAAAACGAGCTGGGCGTTGTGGTGGCCCACAGTGAGTCAG taatggttgtctaagaagggccaaaaacaattcttagatttatttttcagATATCACTAGGGGCTGCACAGTCCAATTATCTGTTGACCACTGCTGCTGAAAATGAGCTGGGTGTTGTGGTGGCCCACAGTGAGTCAGgtcaggttgttactaaatttgctgtcctgggaaggtgggcaacacacaat Alignment from Spaln_nt2Genome ATCTCCCTAGGCGATGCACAGTCCAATTACCTGCTGACTACTGCTG---AAAACGAGCTGGGCGTTGTGGTGGCCCACAGTGAGTCAG taatggttgtctaagaagggccaaaaacaattcttagatttatttttcagATATCACTAGGGGCTGCACAGTCCAATTATCTGTTGACCACTGCTGCTGAAAATGAGCTGGGTGTTGTGGTGGCCCACAGTGAGTCAGgtcaggttgttactaaatttgctgtcctgggaaggtgggcaacacacaat Alignment from Pairagon ATCTCCCTAGGCGATGCACAGTCCAATTACCTGCTGACTA---CTGCTGAAAACGAGCTGGGCGTTGTGGTGGCCCACAGTGAGTCAG taatggttgtctaagaagggccaaaaacaattcttagatttatttttcagATATCACTAGGGGCTGCACAGTCCAATTATCTGTTGACCACTGCTGCTGAAAATGAGCTGGGTGTTGTGGTGGCCCACAGTGAGTCAGgtcaggttgttactaaatttgctgtcctgggaaggtgggcaacacacaat Alignment from Exonerate_protein2genome ATCTCCCTAGGCGATGCACAGTCCAATTACCTGCTGACTACT---GCTGAAAACGAGCTGGGCGTTGTGGTGGCCCACAGTGAGTCAG taatggttgtctaagaagggccaaaaacaattcttagatttatttttcagATATCACTAGGGGCTGCACAGTCCAATTATCTGTTGACCACTGCTGCTGAAAATGAGCTGGGTGTTGTGGTGGCCCACAGTGAGTCAGgtcaggttgttactaaatttgctgtcctgggaaggtgggcaacacacaat Alignment from Exonerate_coding2genome ATCTCCCTAGGCGATGCACAGTCCAATTACCTGCTGACTACT---GCTGAAAACGAGCTGGGCGTTGTGGTGGCCCACAGTGAGTCAG taatggttgtctaagaagggccaaaaacaattcttagatttatttttcagATATCACTAGGGGCTGCACAGTCCAATTATCTGTTGACCACTGCTGCTGAAAATGAGCTGGGTGTTGTGGTGGCCCACAGTGAGTCAGgtcaggttgttactaaatttgctgtcctgggaaggtgggcaacacacaat Alignment from GeneWise ATCTCCCTAGGCGATGCACAGTCCAATTACCTGCTGACTACTGCT---GAAAACGAGCTGGGCGTTGTGGTGGCCCACAGTGAGTCAG taatggttgtctaagaagggccaaaaacaattcttagatttatttttcagATATCACTAGGGGCTGCACAGTCCAATTATCTGTTGACCACTGCTGCTGAAAATGAGCTGGGTGTTGTGGTGGCCCACAGTGAGTCAGgtcaggttgttactaaatttgctgtcctgggaaggtgggcaacacacaat #### Exosc1_ID8333_6 --> 0 - 0 Original Alignment GTAGAAATTTACAAGAGTTTTCGGCCAGGTGACATAGTTTTGGCCAAAGTT aacccctaccaaaaaaccaatcccaacaatggcatctctggtcggggcagGTGGACATCTACAAGAGCTTTCAGCAAGGTGACATAGTTTTGGCAAAGGTTgtgagtttgcatcaacaatatgcttgttgacctttatatatattgacaac Alignment from CESAR GTAGAAATTTACAAGAGTTTTCGGCCAGGTGACATAGTTTTGGCCAAAGTT aacccctaccaaaaaaccaatcccaacaatggcatctctggtcggggcagGTGGACATCTACAAGAGCTTTCAGCAAGGTGACATAGTTTTGGCAAAGGTTgtgagtttgcatcaacaatatgcttgttgacctttatatatattgacaac Alignment from Spaln_aa2Genome GTAGAAATTTACAAGAGTTTTCGGCCAGGTGACATAGTTTTGGCCAAAGTT aacccctaccaaaaaaccaatcccaacaatggcatctctggtcggggcagGTGGACATCTACAAGAGCTTTCAGCAAGGTGACATAGTTTTGGCAAAGGTTgtgagtttgcatcaacaatatgcttgttgacctttatatatattgacaac Alignment from Spaln_nt2Genome GTAGAAATTTACAAGAGTTTTCGGCCAGGTGACATAGTTTTGGCCAAAGTT aacccctaccaaaaaaccaatcccaacaatggcatctctggtcggggcagGTGGACATCTACAAGAGCTTTCAGCAAGGTGACATAGTTTTGGCAAAGGTTgtgagtttgcatcaacaatatgcttgttgacctttatatatattgacaac Alignment from Pairagon GTAGAAATTTACAAGAGTTTTCGGCCAGGTGACATAGTTTTGGCCAAAGTT aacccctaccaaaaaaccaatcccaacaatggcatctctggtcggggcagGTGGACATCTACAAGAGCTTTCAGCAAGGTGACATAGTTTTGGCAAAGGTTgtgagtttgcatcaacaatatgcttgttgacctttatatatattgacaac Alignment from Exonerate_protein2genome GTAGAAATTTACAAGAGTTTTCGGCCAGGTGACATAGTTTTGGCCAAAGTT aacccctaccaaaaaaccaatcccaacaatggcatctctggtcggggcagGTGGACATCTACAAGAGCTTTCAGCAAGGTGACATAGTTTTGGCAAAGGTTgtgagtttgcatcaacaatatgcttgttgacctttatatatattgacaac Alignment from Exonerate_coding2genome GTAGAAATTTACAAGAGTTTTCGGCCAGGTGACATAGTTTTGGCCAAAGTT aacccctaccaaaaaaccaatcccaacaatggcatctctggtcggggcagGTGGACATCTACAAGAGCTTTCAGCAAGGTGACATAGTTTTGGCAAAGGTTgtgagtttgcatcaacaatatgcttgttgacctttatatatattgacaac Alignment from GeneWise GTAGAAATTTACAAGAGTTTTCGGCCAGGTGACATAGTTTTGGCCAAAGTT aacccctaccaaaaaaccaatcccaacaatggcatctctggtcggggcagGTGGACATCTACAAGAGCTTTCAGCAAGGTGACATAGTTTTGGCAAAGGTTgtgagtttgcatcaacaatatgcttgttgacctttatatatattgacaac #### Fads1_ID2693_7 --> 2 - 0 Original Alignment tcGGACCCCCAGCCTTGCTGCCTCTATACTTCCAGTGGTATATTTTCTATTTTGTGGTTCAGCGGAAAAAATGGGTG tttaattctaacccctggtgatttcgccacctatttttttctatttctagttGGACCCTCAGCATTGTTGCCTCTCTACCTCCAGTGGTATATTTTCTATTTTGTGGTACAGCGGAAAAAGTGGGTAgtgagcctccttgacctcaagacagatgtgcaggactctccttgcccgca Alignment from CESAR tcGGACCCCCAGCCTTGCTGCCTCTATACTTCCAGTGGTATATTTTCTATTTTGTGGTTCAGCGGAAAAAATGGGTG tttaattctaacccctggtgatttcgccacctatttttttctatttctagttGGACCCTCAGCATTGTTGCCTCTCTACCTCCAGTGGTATATTTTCTATTTTGTGGTACAGCGGAAAAAGTGGGTAgtgagcctccttgacctcaagacagatgtgcaggactctccttgcccgca Alignment from Spaln_aa2Genome TCGGACCCCCAGCCTTGCTGCCTCTATACTTCCAGTGGTATATTTTCTATTTTGTGGTTCAGCGGAAAAAATGGGTG tttaattctaacccctggtgatttcgccacctatttttttctatttctagTTGGACCCTCAGCATTGTTGCCTCTCTACCTCCAGTGGTATATTTTCTATTTTGTGGTACAGCGGAAAAAGTGGGTAgtgagcctccttgacctcaagacagatgtgcaggactctccttgcccgca Alignment from Spaln_nt2Genome TCGGACCCCCAGCCTTGCTGCCTCTATACTTCCAGTGGTATATTTTCTATTTTGTGGTTCAGCGGAAAAAATGGGTG tttaattctaacccctggtgatttcgccacctatttttttctatttctagTTGGACCCTCAGCATTGTTGCCTCTCTACCTCCAGTGGTATATTTTCTATTTTGTGGTACAGCGGAAAAAGTGGGTAgtgagcctccttgacctcaagacagatgtgcaggactctccttgcccgca Alignment from Pairagon TCGGACCCCCAGCCTTGCTGCCTCTATACTTCCAGTGGTATATTTTCTATTTTGTGGTTCAGCGGAAAAAATGGGTG tttaattctaacccctggtgatttcgccacctatttttttctatttctagTTGGACCCTCAGCATTGTTGCCTCTCTACCTCCAGTGGTATATTTTCTATTTTGTGGTACAGCGGAAAAAGTGGGTAgtgagcctccttgacctcaagacagatgtgcaggactctccttgcccgca Alignment from Exonerate_protein2genome TCGGACCCCCAGCCTTGCTGCCTCTATACTTCCAGTGGTATATTTTCTATTTTGTGGTTCAGCGGAAAAAATGGGTG tttaattctaacccctggtgatttcgccacctatttttttctatttctagTTGGACCCTCAGCATTGTTGCCTCTCTACCTCCAGTGGTATATTTTCTATTTTGTGGTACAGCGGAAAAAGTGGGTAgtgagcctccttgacctcaagacagatgtgcaggactctccttgcccgca Alignment from Exonerate_coding2genome TCGGACCCCCAGCCTTGCTGCCTCTATACTTCCAGTGGTATATTTTCTATTTTGTGGTTCAGCGGAAAAAATGGGTG tttaattctaacccctggtgatttcgccacctatttttttctatttctagTTGGACCCTCAGCATTGTTGCCTCTCTACCTCCAGTGGTATATTTTCTATTTTGTGGTACAGCGGAAAAAGTGGGTAgtgagcctccttgacctcaagacagatgtgcaggactctccttgcccgca Alignment from GeneWise TCGGACCCCCAGCCTTGCTGCCTCTATACTTCCAGTGGTATATTTTCTATTTTGTGGTTCAGCGGAAAAAATGGGTG tttaattctaacccctggtgatttcgccacctatttttttctatttctagTTGGACCCTCAGCATTGTTGCCTCTCTACCTCCAGTGGTATATTTTCTATTTTGTGGTACAGCGGAAAAAGTGGGTAgtgagcctccttgacctcaagacagatgtgcaggactctccttgcccgca #### Fads3_ID2666_9 --> 1 - 0 Original Alignment gGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG actccatagactgtatcaatgatcctgtttcggatttctctgtcttacaggGTGTTGGAGAGCCACTGGTTTGTGTGGATCACACAAATGAACCACATCCCCAAGAAGATAGGACATGAAAAACATCGGGACTGGGCAACCTCTCAGgcaagtgctcttaagtacatactagtggtgaaagtgtctgtgctttaagt Alignment from CESAR gGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG actccatagactgtatcaatgatcctgtttcggatttctctgtcttacaggGTGTTGGAGAGCCACTGGTTTGTGTGGATCACACAAATGAACCACATCCCCAAGAAGATAGGACATGAAAAACATCGGGACTGGGCAACCTCTCAGgcaagtgctcttaagtacatactagtggtgaaagtgtctgtgctttaagt Alignment from Spaln_aa2Genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG actccatagactgtatcaatgatcctgtttcggatttctctgtcttacagGGTGTTGGAGAGCCACTGGTTTGTGTGGATCACACAAATGAACCACATCCCCAAGAAGATAGGACATGAAAAACATCGGGACTGGGCAACCTCTCAGgcaagtgctcttaagtacatactagtggtgaaagtgtctgtgctttaagt Alignment from Spaln_nt2Genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG actccatagactgtatcaatgatcctgtttcggatttctctgtcttacagGGTGTTGGAGAGCCACTGGTTTGTGTGGATCACACAAATGAACCACATCCCCAAGAAGATAGGACATGAAAAACATCGGGACTGGGCAACCTCTCAGgcaagtgctcttaagtacatactagtggtgaaagtgtctgtgctttaagt Alignment from Pairagon GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG actccatagactgtatcaatgatcctgtttcggatttctctgtcttacagGGTGTTGGAGAGCCACTGGTTTGTGTGGATCACACAAATGAACCACATCCCCAAGAAGATAGGACATGAAAAACATCGGGACTGGGCAACCTCTCAGgcaagtgctcttaagtacatactagtggtgaaagtgtctgtgctttaagt Alignment from Exonerate_protein2genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAGCTGGCAGCCA actccatagactgtatcaatgatcctgtttcggatttctctgtcttacagGGTGTTGGAGAGCCACTGGTTTGTGTGGATCACACAAATGAACCACATCCCCAAGAAGATAGGACATGAAAAACATCGGGACTGGGCAACCTCTCAGGCAAGTGCTCttaagtacatactagtggtgaaagtgtctgtgctttaagt Alignment from Exonerate_coding2genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAGCTGGCAGCCA actccatagactgtatcaatgatcctgtttcggatttctctgtcttacagGGTGTTGGAGAGCCACTGGTTTGTGTGGATCACACAAATGAACCACATCCCCAAGAAGATAGGACATGAAAAACATCGGGACTGGGCAACCTCTCAGGCAAGTGCTCttaagtacatactagtggtgaaagtgtctgtgctttaagt Alignment from GeneWise GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAGCTGGCAGCCACC-- actccatagactgtatcaatgatcctgtttcggatttctctgtcttacagGGTGTTGGAGAGCCACTGGTTTGTGTGGATCACACAAATGAACCACATCCCCAAGAAGATAGGACATGAAAAACATCGGGACTGGGCAACCTCTCAGGCAAGTGCTCTTAAgtacatactagtggtgaaagtgtctgtgctttaagt #### Fads3_ID2667_10 --> 0 - 2 Original Alignment CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACca ccaaggcaatgaaacagttgtctcaattaaatatttccactattgtttagTTGGCAGCCACT------------TCATCACTCTTCATTGACTGGTTCAGTGGTCACCTTAATTTTCAAATTGAACACtagtagagattgcattgaggggttagtggcaggacccaaacctagagctatg Alignment from CESAR CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACca ccaaggcaatgaaacagttgtctcaattaaatatttccactattgtttagTTGGCAGCCACT------------TCATCACTCTTCATTGACTGGTTCAGTGGTCACCTTAATTTTCAAATTGAACACtagtagagattgcattgaggggttagtggcaggacccaaacctagagctatg Alignment from Spaln_aa2Genome CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA ccaaggcaatgaaacagttgtctcaattaaatatttccactattgtttagTTGGCAGCCACT------------TCATCACTCTTCATTGACTGGTTCAGTGGTCACCTTAATTTTCAAATTGAACACTAgtagagattgcattgaggggttagtggcaggacccaaacctagagctatg Alignment from Spaln_nt2Genome CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA ccaaggcaatgaaacagttgtctcaattaaatatttccactattgtttagTTGGCAGCCACTT------------CATCACTCTTCATTGACTGGTTCAGTGGTCACCTTAATTTTCAAATTGAACACTAgtagagattgcattgaggggttagtggcaggacccaaacctagagctatg Alignment from Pairagon CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA ccaaggcaatgaaacagttgtctcaattaaatatttccactattgtttagTTGGCAGCCACTT------------CATCACTCTTCATTGACTGGTTCAGTGGTCACCTTAATTTTCAAATTGAACACTAgtagagattgcattgaggggttagtggcaggacccaaacctagagctatg Alignment from Exonerate_protein2genome CCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA ccaaggcaatgaaacagttgtctcaattaaatatttccactattgtttAGTTGGCAGCCACTTCATCACTCTTCATTGACTGGTTCAGTGGTCACCTTAATTTTCAAATTGAACACTAgtagagattgcattgaggggttagtggcaggacccaaacctagagctatg Alignment from Exonerate_coding2genome CCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA ccaaggcaatgaaacagttgtctcaattaaatatttccactattgtttAGTTGGCAGCCACTTCATCACTCTTCATTGACTGGTTCAGTGGTCACCTTAATTTTCAAATTGAACACTAgtagagattgcattgaggggttagtggcaggacccaaacctagagctatg Alignment from GeneWise CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA ccaaggcaatgaaacagttgtctcaattaaatatttccactattgtttagTTGGCAGCCACT------------TCATCACTCTTCATTGACTGGTTCAGTGGTCACCTTAATTTTCAAATTGAACACTAgtagagattgcattgaggggttagtggcaggacccaaacctagagctatg #### Fam160b1_ID12353_4 --> 0 - 0 Original Alignment TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCC------CTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccacaccacctctttgcctatagtctctttttgtttcttatccttagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACTTTACACCAAACTACTTGAGCAAATCCAGCGACCTCGACCACTACTCCCACATGTCAATGTGCACAGGCCGGTGCAGgtcagtaagtataaacatgaatatagtatagcatcacttatgttttctta Alignment from CESAR TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCC------CTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccacaccacctctttgcctatagtctctttttgtttcttatccttagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACTTTACACCAAACTACTTGAGCAAATCCAGCGACCTCGACCACTACTCCCACATGTCAATGTGCACAGGCCGGTGCAGgtcagtaagtataaacatgaatatagtatagcatcacttatgttttctta Alignment from Spaln_aa2Genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGG------CAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccacaccacctctttgcctatagtctctttttgtttcttatccttagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACTTTACACCAAACTACTTGAGCAAATCCAGCGACCTCGACCACTACTCCCACATGTCAATGTGCACAGGCCGGTGCAGgtcagtaagtataaacatgaatatagtatagcatcacttatgttttctta Alignment from Spaln_nt2Genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCC------TGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccacaccacctctttgcctatagtctctttttgtttcttatccttagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACTTTACACCAAACTACTTGAGCAAATCCAGCGACCTCGACCACTACTCCCACATGTCAATGTGCACAGGCCGGTGCAGgtcagtaagtataaacatgaatatagtatagcatcacttatgttttctta Alignment from Pairagon TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCC------CTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccacaccacctctttgcctatagtctctttttgtttcttatccttagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACTTTACACCAAACTACTTGAGCAAATCCAGCGACCTCGACCACTACTCCCACATGTCAATGTGCACAGGCCGGTGCAGgtcagtaagtataaacatgaatatagtatagcatcacttatgttttctta Alignment from Exonerate_protein2genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGG------CAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccacaccacctctttgcctatagtctctttttgtttcttatccttagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACTTTACACCAAACTACTTGAGCAAATCCAGCGACCTCGACCACTACTCCCACATGTCAATGTGCACAGGCCGGTGCAGgtcagtaagtataaacatgaatatagtatagcatcacttatgttttctta Alignment from Exonerate_coding2genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGG------CAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccacaccacctctttgcctatagtctctttttgtttcttatccttagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACTTTACACCAAACTACTTGAGCAAATCCAGCGACCTCGACCACTACTCCCACATGTCAATGTGCACAGGCCGGTGCAGgtcagtaagtataaacatgaatatagtatagcatcacttatgttttctta Alignment from GeneWise TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGG------CAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccacaccacctctttgcctatagtctctttttgtttcttatccttagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACTTTACACCAAACTACTTGAGCAAATCCAGCGACCTCGACCACTACTCCCACATGTCAATGTGCACAGGCCGGTGCAGgtcagtaagtataaacatgaatatagtatagcatcacttatgttttctta #### Fam160b1_ID12359_10 --> 1 - 0 Original Alignment cTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG ctctgctgtatcttttccttagtgatgtcatattcctgatgtttttgtagaTCTGAGATGGGAATTCTGACATCAACTGCCCTGCTACACCGTATTGTCCGGCAAGTAACCTCAGATGTTCTGCTCCAGATTATTGTTGTCTTCATACTTGCTGAACAAAAAGAGCCAGAAACTTTGTCAGAGATTAGCAGACACCCACTGAGACATAGGTTAATTGAGCATTGTGATCACATATCTGACGAGgtatgtcgaatgaagccactgtgtactcatgtaacatgtagatatgaggg Alignment from CESAR cTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG ctctgctgtatcttttccttagtgatgtcatattcctgatgtttttgtagaTCTGAGATGGGAATTCTGACATCAACTGCCCTGCTACACCGTATTGTCCGGCAAGTAACCTCAGATGTTCTGCTCCAGATTATTGTTGTCTTCATACTTGCTGAACAAAAAGAGCCAGAAACTTTGTCAGAGATTAGCAGACACCCACTGAGACATAGGTTAATTGAGCATTGTGATCACATATCTGACGAGgtatgtcgaatgaagccactgtgtactcatgtaacatgtagatatgaggg Alignment from Spaln_aa2Genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG ctctgctgtatcttttccttagtgatgtcatattcctgatgtttttgtagATCTGAGATGGGAATTCTGACATCAACTGCCCTGCTACACCGTATTGTCCGGCAAGTAACCTCAGATGTTCTGCTCCAGATTATTGTTGTCTTCATACTTGCTGAACAAAAAGAGCCAGAAACTTTGTCAGAGATTAGCAGACACCCACTGAGACATAGGTTAATTGAGCATTGTGATCACATATCTGACGAGgtatgtcgaatgaagccactgtgtactcatgtaacatgtagatatgaggg Alignment from Spaln_nt2Genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG ctctgctgtatcttttccttagtgatgtcatattcctgatgtttttgtagATCTGAGATGGGAATTCTGACATCAACTGCCCTGCTACACCGTATTGTCCGGCAAGTAACCTCAGATGTTCTGCTCCAGATTATTGTTGTCTTCATACTTGCTGAACAAAAAGAGCCAGAAACTTTGTCAGAGATTAGCAGACACCCACTGAGACATAGGTTAATTGAGCATTGTGATCACATATCTGACGAGgtatgtcgaatgaagccactgtgtactcatgtaacatgtagatatgaggg Alignment from Pairagon CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG ctctgctgtatcttttccttagtgatgtcatattcctgatgtttttgtagATCTGAGATGGGAATTCTGACATCAACTGCCCTGCTACACCGTATTGTCCGGCAAGTAACCTCAGATGTTCTGCTCCAGATTATTGTTGTCTTCATACTTGCTGAACAAAAAGAGCCAGAAACTTTGTCAGAGATTAGCAGACACCCACTGAGACATAGGTTAATTGAGCATTGTGATCACATATCTGACGAGgtatgtcgaatgaagccactgtgtactcatgtaacatgtagatatgaggg Alignment from Exonerate_protein2genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG ctctgctgtatcttttccttagtgatgtcatattcctgatgtttttgtagATCTGAGATGGGAATTCTGACATCAACTGCCCTGCTACACCGTATTGTCCGGCAAGTAACCTCAGATGTTCTGCTCCAGATTATTGTTGTCTTCATACTTGCTGAACAAAAAGAGCCAGAAACTTTGTCAGAGATTAGCAGACACCCACTGAGACATAGGTTAATTGAGCATTGTGATCACATATCTGACGAGgtatgtcgaatgaagccactgtgtactcatgtaacatgtagatatgaggg Alignment from Exonerate_coding2genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG ctctgctgtatcttttccttagtgatgtcatattcctgatgtttttgtagATCTGAGATGGGAATTCTGACATCAACTGCCCTGCTACACCGTATTGTCCGGCAAGTAACCTCAGATGTTCTGCTCCAGATTATTGTTGTCTTCATACTTGCTGAACAAAAAGAGCCAGAAACTTTGTCAGAGATTAGCAGACACCCACTGAGACATAGGTTAATTGAGCATTGTGATCACATATCTGACGAGgtatgtcgaatgaagccactgtgtactcatgtaacatgtagatatgaggg Alignment from GeneWise CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG ctctgctgtatcttttccttagtgatgtcatattcctgatgtttttgtagATCTGAGATGGGAATTCTGACATCAACTGCCCTGCTACACCGTATTGTCCGGCAAGTAACCTCAGATGTTCTGCTCCAGATTATTGTTGTCTTCATACTTGCTGAACAAAAAGAGCCAGAAACTTTGTCAGAGATTAGCAGACACCCACTGAGACATAGGTTAATTGAGCATTGTGATCACATATCTGACGAGgtatgtcgaatgaagccactgtgtactcatgtaacatgtagatatgaggg #### Fam178a_ID9227_8 --> 1 - 2 Original Alignment gGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCaa aagttggctcctttcccgcctttacacatgttctatttgtgtttctctaggGAATTTCTAAAGAAATTTTCAGTTACAGTTGATACCATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAACAATATTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGGTGTGGAAAAGCTCATTCTCaggtgagcagatcactgcatatgtagtagtatctttccccatttgccctatg Alignment from CESAR gGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCaa aagttggctcctttcccgcctttacacatgttctatttgtgtttctctaggGAATTTCTAAAGAAATTTTCAGTTACAGTTGATACCATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAACAATATTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGGTGTGGAAAAGCTCATTCTCaggtgagcagatcactgcatatgtagtagtatctttccccatttgccctatg Alignment from Spaln_aa2Genome GGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCAA aagttggctcctttcccgcctttacacatgttctatttgtgtttctctagGGAATTTCTAAAGAAATTTTCAGTTACAGTTGATACCATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAACAATATTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGGTGTGGAAAAGCTCATTCTCAGgtgagcagatcactgcatatgtagtagtatctttccccatttgccctatg Alignment from Spaln_nt2Genome GGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCAA aagttggctcctttcccgcctttacacatgttctatttgtgtttctctagGGAATTTCTAAAGAAATTTTCAGTTACAGTTGATACCATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAACAATATTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGGTGTGGAAAAGCTCATTCTCAGgtgagcagatcactgcatatgtagtagtatctttccccatttgccctatg Alignment from Pairagon GGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCAA aagttggctcctttcccgcctttacacatgttctatttgtgtttctctagGGAATTTCTAAAGAAATTTTCAGTTACAGTTGATACCATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAACAATATTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGGTGTGGAAAAGCTCATTCTCAGgtgagcagatcactgcatatgtagtagtatctttccccatttgccctatg Alignment from Exonerate_protein2genome GGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCAA aagttggctcctttcccgcctttacacatgttctatttgtgtttctctagGGAATTTCTAAAGAAATTTTCAGTTACAGTTGATACCATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAACAATATTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGGTGTGGAAAAGCTCATTCTCAGgtgagcagatcactgcatatgtagtagtatctttccccatttgccctatg Alignment from Exonerate_coding2genome GGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCAA aagttggctcctttcccgcctttacacatgttctatttgtgtttctctagGGAATTTCTAAAGAAATTTTCAGTTACAGTTGATACCATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAACAATATTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGGTGTGGAAAAGCTCATTCTCAGgtgagcagatcactgcatatgtagtagtatctttccccatttgccctatg Alignment from GeneWise GGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCAA aagttggctcctttcccgcctttacacatgttctatttgtgtttctctagGGAATTTCTAAAGAAATTTTCAGTTACAGTTGATACCATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAACAATATTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGGTGTGGAAAAGCTCATTCTCAGgtgagcagatcactgcatatgtagtagtatctttccccatttgccctatg #### Fam178a_ID9230_11 --> 2 - 2 Original Alignment atACTTTCAGTGACTCTCCAGTTTGGCCCTGGATCCCATCTTTGTCTGATATAGCAGCTGTATTCTTCAACATGGGCGTTGGTTTTGGATCTTTGTTTCCTCTGGAGACTCTTCAGCCTGACTTTAATGAAGAAAATCTAat tcaggcgggtgattctgtgcttgtggtttttttttctttttgtgacatagatACTTTCAGTGACTCTCCTGTGTGGCCTTGGATCCCATCTTTGTCTGATATAGCAGCTGTCTTCTTTAACATGGGTGTTGGTTTTGGATCTCTGTTTCCTCTAGAAACTCTTTATCCTGACTTCAATGAGGAAAATCTTatgtgagccttggattgctttgtgaatatctaaaggaattatttgggttgta Alignment from CESAR atACTTTCAGTGACTCTCCAGTTTGGCCCTGGATCCCATCTTTGTCTGATATAGCAGCTGTATTCTTCAACATGGGCGTTGGTTTTGGATCTTTGTTTCCTCTGGAGACTCTTCAGCCTGACTTTAATGAAGAAAATCTAat tcaggcgggtgattctgtgcttgtggtttttttttctttttgtgacatagatACTTTCAGTGACTCTCCTGTGTGGCCTTGGATCCCATCTTTGTCTGATATAGCAGCTGTCTTCTTTAACATGGGTGTTGGTTTTGGATCTCTGTTTCCTCTAGAAACTCTTTATCCTGACTTCAATGAGGAAAATCTTatgtgagccttggattgctttgtgaatatctaaaggaattatttgggttgta Alignment from Spaln_aa2Genome ATACTTTCAGTGACTCTCCAGTTTGGCCCTGGATCCCATCTTTGTCTGATATAGCAGCTGTATTCTTCAACATGGGCGTTGGTTTTGGATCTTTGTTTCCTCTGGAGACTCTTCAGCCTGACTTTAATGAAGAAAATCTAAT tcaggcgggtgattctgtgcttgtggtttttttttctttttgtgacatagATACTTTCAGTGACTCTCCTGTGTGGCCTTGGATCCCATCTTTGTCTGATATAGCAGCTGTCTTCTTTAACATGGGTGTTGGTTTTGGATCTCTGTTTCCTCTAGAAACTCTTTATCCTGACTTCAATGAGGAAAATCTTATgtgagccttggattgctttgtgaatatctaaaggaattatttgggttgta Alignment from Spaln_nt2Genome ATACTTTCAGTGACTCTCCAGTTTGGCCCTGGATCCCATCTTTGTCTGATATAGCAGCTGTATTCTTCAACATGGGCGTTGGTTTTGGATCTTTGTTTCCTCTGGAGACTCTTCAGCCTGACTTTAATGAAGAAAATCTAAT tcaggcgggtgattctgtgcttgtggtttttttttctttttgtgacatagATACTTTCAGTGACTCTCCTGTGTGGCCTTGGATCCCATCTTTGTCTGATATAGCAGCTGTCTTCTTTAACATGGGTGTTGGTTTTGGATCTCTGTTTCCTCTAGAAACTCTTTATCCTGACTTCAATGAGGAAAATCTTATgtgagccttggattgctttgtgaatatctaaaggaattatttgggttgta Alignment from Pairagon ATACTTTCAGTGACTCTCCAGTTTGGCCCTGGATCCCATCTTTGTCTGATATAGCAGCTGTATTCTTCAACATGGGCGTTGGTTTTGGATCTTTGTTTCCTCTGGAGACTCTTCAGCCTGACTTTAATGAAGAAAATCTAAT tcaggcgggtgattctgtgcttgtggtttttttttctttttgtgacatagATACTTTCAGTGACTCTCCTGTGTGGCCTTGGATCCCATCTTTGTCTGATATAGCAGCTGTCTTCTTTAACATGGGTGTTGGTTTTGGATCTCTGTTTCCTCTAGAAACTCTTTATCCTGACTTCAATGAGGAAAATCTTATgtgagccttggattgctttgtgaatatctaaaggaattatttgggttgta Alignment from Exonerate_protein2genome ATACTTTCAGTGACTCTCCAGTTTGGCCCTGGATCCCATCTTTGTCTGATATAGCAGCTGTATTCTTCAACATGGGCGTTGGTTTTGGATCTTTGTTTCCTCTGGAGACTCTTCAGCCTGACTTTAATGAAGAAAATCTAAT tcaggcgggtgattctgtgcttgtggtttttttttctttttgtgacatagATACTTTCAGTGACTCTCCTGTGTGGCCTTGGATCCCATCTTTGTCTGATATAGCAGCTGTCTTCTTTAACATGGGTGTTGGTTTTGGATCTCTGTTTCCTCTAGAAACTCTTTATCCTGACTTCAATGAGGAAAATCTTATgtgagccttggattgctttgtgaatatctaaaggaattatttgggttgta Alignment from Exonerate_coding2genome tcaggcgggtgattctgtgcttgtggtttttttttctttttgtgacatagatactttcagtgactctcctgtgtggccttggatcccatctttgtctgatatagcagctgtcttctttaacatgggtgttggttttggatctctgtttcctctagaaactctttatcctgacttcaatgaggaaaatcttatgtgagccttggattgctttgtgaatatctaaaggaattatttgggttgta Alignment from GeneWise ATACTTTCAGTGACTCTCCAGTTTGGCCCTGGATCCCATCTTTGTCTGATATAGCAGCTGTATTCTTCAACATGGGCGTTGGTTTTGGATCTTTGTTTCCTCTGGAGACTCTTCAGCCTGACTTTAATGAAGAAAATCTAAT tcaggcgggtgattctgtgcttgtggtttttttttctttttgtgacatagATACTTTCAGTGACTCTCCTGTGTGGCCTTGGATCCCATCTTTGTCTGATATAGCAGCTGTCTTCTTTAACATGGGTGTTGGTTTTGGATCTCTGTTTCCTCTAGAAACTCTTTATCCTGACTTCAATGAGGAAAATCTTATgtgagccttggattgctttgtgaatatctaaaggaattatttgggttgta #### Fam178a_ID9231_12 --> 1 - 0 Original Alignment tTCTGAAACACAGAAAACACTGGGGGGAAAAGAAAGTGAAGATTCACCTTATAGTCCAGTATTTTCAGCTCTTCCTGAAACCAACATTTTAAATGTGGTTAAG ggtaccactcatgttatccaatggctctgtgcccctctatctcctctcagtTCTGAAACACAGAAAACACTAGGAGGAAAAGAAAGTGAAGACTCGCCCTATAGTCCTGTATTTTCAGCTCTTCCTGAAACCAACATTTTGAATGTAGTTAAGgtacgttaaagatattagtggctaatttcctatttttatacatttcttca Alignment from CESAR tTCTGAAACACAGAAAACACTGGGGGGAAAAGAAAGTGAAGATTCACCTTATAGTCCAGTATTTTCAGCTCTTCCTGAAACCAACATTTTAAATGTGGTTAAG ggtaccactcatgttatccaatggctctgtgcccctctatctcctctcagtTCTGAAACACAGAAAACACTAGGAGGAAAAGAAAGTGAAGACTCGCCCTATAGTCCTGTATTTTCAGCTCTTCCTGAAACCAACATTTTGAATGTAGTTAAGgtacgttaaagatattagtggctaatttcctatttttatacatttcttca Alignment from Spaln_aa2Genome TTCTGAAACACAGAAAACACTGGGGGGAAAAGAAAGTGAAGATTCACCTTATAGTCCAGTATTTTCAGCTCTTCCTGAAACCAACATTTTAAATGTGGTTAAG ggtaccactcatgttatccaatggctctgtgcccctctatctcctctcagTTCTGAAACACAGAAAACACTAGGAGGAAAAGAAAGTGAAGACTCGCCCTATAGTCCTGTATTTTCAGCTCTTCCTGAAACCAACATTTTGAATGTAGTTAAGgtacgttaaagatattagtggctaatttcctatttttatacatttcttca Alignment from Spaln_nt2Genome TTCTGAAACACAGAAAACACTGGGGGGAAAAGAAAGTGAAGATTCACCTTATAGTCCAGTATTTTCAGCTCTTCCTGAAACCAACATTTTAAATGTGGTTAAG ggtaccactcatgttatccaatggctctgtgcccctctatctcctctcagTTCTGAAACACAGAAAACACTAGGAGGAAAAGAAAGTGAAGACTCGCCCTATAGTCCTGTATTTTCAGCTCTTCCTGAAACCAACATTTTGAATGTAGTTAAGgtacgttaaagatattagtggctaatttcctatttttatacatttcttca Alignment from Pairagon TTCTGAAACACAGAAAACACTGGGGGGAAAAGAAAGTGAAGATTCACCTTATAGTCCAGTATTTTCAGCTCTTCCTGAAACCAACATTTTAAATGTGGTTAAG ggtaccactcatgttatccaatggctctgtgcccctctatctcctctcagTTCTGAAACACAGAAAACACTAGGAGGAAAAGAAAGTGAAGACTCGCCCTATAGTCCTGTATTTTCAGCTCTTCCTGAAACCAACATTTTGAATGTAGTTAAGgtacgttaaagatattagtggctaatttcctatttttatacatttcttca Alignment from Exonerate_protein2genome TTCTGAAACACAGAAAACACTGGGGGGAAAAGAAAGTGAAGATTCACCTTATAGTCCAGTATTTTCAGCTCTTCCTGAAACCAACATTTTAAATGTGGTTAAG ggtaccactcatgttatccaatggctctgtgcccctctatctcctctcagTTCTGAAACACAGAAAACACTAGGAGGAAAAGAAAGTGAAGACTCGCCCTATAGTCCTGTATTTTCAGCTCTTCCTGAAACCAACATTTTGAATGTAGTTAAGgtacgttaaagatattagtggctaatttcctatttttatacatttcttca Alignment from Exonerate_coding2genome ggtaccactcatgttatccaatggctctgtgcccctctatctcctctcagttctgaaacacagaaaacactaggaggaaaagaaagtgaagactcgccctatagtcctgtattttcagctcttcctgaaaccaacattttgaatgtagttaaggtacgttaaagatattagtggctaatttcctatttttatacatttcttca Alignment from GeneWise TTCTGAAACACAGAAAACACTGGGGGGAAAAGAAAGTGAAGATTCACCTTATAGTCCAGTATTTTCAGCTCTTCCTGAAACCAACATTTTAAATGTGGTTAAG ggtaccactcatgttatccaatggctctgtgcccctctatctcctctcagTTCTGAAACACAGAAAACACTAGGAGGAAAAGAAAGTGAAGACTCGCCCTATAGTCCTGTATTTTCAGCTCTTCCTGAAACCAACATTTTGAATGTAGTTAAGgtacgttaaagatattagtggctaatttcctatttttatacatttcttca #### Fam189a2_ID5247_10 --> 2 - 0 Original Alignment ctACCCCGGTGCTCAGCTGCGAAGCTGCAACGCAGACAGAAAGGAGGCTAGATCTCGCTACAGTGACTCTGAGGAGAGGCGCGAGGCCACGGGCATCAAGATGCAGACCCCGCTCTCTGATAGATTACAGGTCATACATAGACACGAAGCTGCTAGTGGCCAGGTTCCTGGAGCAGTCCTCCTGCAGCATGACTCCGGACATTCATGAACTTGTAGAGAACATAAAGTCTGTTCTGAAATCCGATGAGGGGCACATGGAAGAAGCCATCACGAGTGCCAGTTTCCTAGAGCAG ttagttggactagtttgtttttgttaggactgccttttctttttacccagcaACCCCAGTGCTAAGCTGTCAAGCTGCGACCAAGACAGAAAGAAGATTAGATCTTGCCACAGTGACTCTAAGGAGGGGTTCACGGCCGCGGGCATCGAGATGCAGGCCTCGGTCACTTGTTGATTACAGGTCATACATTGACACAAAGCTACTGGTGGCTGGCTTTCTTCAGCAGTCATCTTGCAGCATGACTCCAGGTATTCATGAACTGGTGGAGAACATAAAGTCTGTACTAAAATCTTATGAGGGACATATGGAAGGAGCTATAACAAGTGCTAGTTTCTTGGAACAAgtagggtacctcctataccctagacttatatctagtatgtaaggcctcac Alignment from CESAR ctACCCCGGTGCTCAGCTGCGAAGCTGCAACGCAGACAGAAAGGAGGCTAGATCTCGCTACAGTGACTCTGAGGAGAGGCGCGAGGCCACGGGCATCAAGATGCAGACCCCGCTCTCTGATAGATTACAGGTCATACATAGACACGAAGCTGCTAGTGGCCAGGTTCCTGGAGCAGTCCTCCTGCAGCATGACTCCGGACATTCATGAACTTGTAGAGAACATAAAGTCTGTTCTGAAATCCGATGAGGGGCACATGGAAGAAGCCATCACGAGTGCCAGTTTCCTAGAGCAG ttagttggactagtttgtttttgttaggactgccttttctttttacccagcaACCCCAGTGCTAAGCTGTCAAGCTGCGACCAAGACAGAAAGAAGATTAGATCTTGCCACAGTGACTCTAAGGAGGGGTTCACGGCCGCGGGCATCGAGATGCAGGCCTCGGTCACTTGTTGATTACAGGTCATACATTGACACAAAGCTACTGGTGGCTGGCTTTCTTCAGCAGTCATCTTGCAGCATGACTCCAGGTATTCATGAACTGGTGGAGAACATAAAGTCTGTACTAAAATCTTATGAGGGACATATGGAAGGAGCTATAACAAGTGCTAGTTTCTTGGAACAAgtagggtacctcctataccctagacttatatctagtatgtaaggcctcac Alignment from Spaln_aa2Genome CTACCCCGGTGCTCAGCTGCGAAGCTGCAACGCAGACAGAAAGGAGGCTAGATCTCGCTACAGTGACTCTGAGGAGAGGCGCGAGGCCACGGGCATCAAGATGCAGACCCCGCTCTCTGATAGATTACAGGTCATACATAGACACGAAGCTGCTAGTGGCCAGGTTCCTGGAGCAGTCCTCCTGCAGCATGACTCCGGACATTCATGAACTTGTAGAGAACATAAAGTCTGTTCTGAAATCCGATGAGGGGCACATGGAAGAAGCCATCACGAGTGCCAGTTTCCTAGAGCAG ttagttggactagtttgtttttgttaggactgccttttctttttacccagCAACCCCAGTGCTAAGCTGTCAAGCTGCGACCAAGACAGAAAGAAGATTAGATCTTGCCACAGTGACTCTAAGGAGGGGTTCACGGCCGCGGGCATCGAGATGCAGGCCTCGGTCACTTGTTGATTACAGGTCATACATTGACACAAAGCTACTGGTGGCTGGCTTTCTTCAGCAGTCATCTTGCAGCATGACTCCAGGTATTCATGAACTGGTGGAGAACATAAAGTCTGTACTAAAATCTTATGAGGGACATATGGAAGGAGCTATAACAAGTGCTAGTTTCTTGGAACAAgtagggtacctcctataccctagacttatatctagtatgtaaggcctcac Alignment from Spaln_nt2Genome CTACCCCGGTGCTCAGCTGCGAAGCTGCAACGCAGACAGAAAGGAGGCTAGATCTCGCTACAGTGACTCTGAGGAGAGGCGCGAGGCCACGGGCATCAAGATGCAGACCCCGCTCTCTGATAGATTACAGGTCATACATAGACACGAAGCTGCTAGTGGCCAGGTTCCTGGAGCAGTCCTCCTGCAGCATGACTCCGGACATTCATGAACTTGTAGAGAACATAAAGTCTGTTCTGAAATCCGATGAGGGGCACATGGAAGAAGCCATCACGAGTGCCAGTTTCCTAGAGCAG ttagttggactagtttgtttttgttaggactgccttttctttttacccagCAACCCCAGTGCTAAGCTGTCAAGCTGCGACCAAGACAGAAAGAAGATTAGATCTTGCCACAGTGACTCTAAGGAGGGGTTCACGGCCGCGGGCATCGAGATGCAGGCCTCGGTCACTTGTTGATTACAGGTCATACATTGACACAAAGCTACTGGTGGCTGGCTTTCTTCAGCAGTCATCTTGCAGCATGACTCCAGGTATTCATGAACTGGTGGAGAACATAAAGTCTGTACTAAAATCTTATGAGGGACATATGGAAGGAGCTATAACAAGTGCTAGTTTCTTGGAACAAgtagggtacctcctataccctagacttatatctagtatgtaaggcctcac Alignment from Pairagon CTACCCCGGTGCTCAGCTGCGAAGCTGCAACGCAGACAGAAAGGAGGCTAGATCTCGCTACAGTGACTCTGAGGAGAGGCGCGAGGCCACGGGCATCAAGATGCAGACCCCGCTCTCTGATAGATTACAGGTCATACATAGACACGAAGCTGCTAGTGGCCAGGTTCCTGGAGCAGTCCTCCTGCAGCATGACTCCGGACATTCATGAACTTGTAGAGAACATAAAGTCTGTTCTGAAATCCGATGAGGGGCACATGGAAGAAGCCATCACGAGTGCCAGTTTCCTAGAGCAG ttagttggactagtttgtttttgttaggactgccttttctttttacccagCAACCCCAGTGCTAAGCTGTCAAGCTGCGACCAAGACAGAAAGAAGATTAGATCTTGCCACAGTGACTCTAAGGAGGGGTTCACGGCCGCGGGCATCGAGATGCAGGCCTCGGTCACTTGTTGATTACAGGTCATACATTGACACAAAGCTACTGGTGGCTGGCTTTCTTCAGCAGTCATCTTGCAGCATGACTCCAGGTATTCATGAACTGGTGGAGAACATAAAGTCTGTACTAAAATCTTATGAGGGACATATGGAAGGAGCTATAACAAGTGCTAGTTTCTTGGAACAAgtagggtacctcctataccctagacttatatctagtatgtaaggcctcac Alignment from Exonerate_protein2genome CTACCCCGGTGCTCAGCTGCGAAGCTGCAACGCAGACAGAAAGGAGGCTAGATCTCGCTACAGTGACTCTGAGGAGAGGCGCGAGGCCACGGGCATCAAGATGCAGACCCCGCTCTCTGATAGATTACAGGTCATACATAGACACGAAGCTGCTAGTGGCCAGGTTCCTGGAGCAGTCCTCCTGCAGCATGACTCCGGACATTCATGAACTTGTAGAGAACATAAAGTCTGTTCTGAAATCCGATGAGGGGCACATGGAAGAAGCCATCACGAGTGCCAGTTTCCTAGAGCAG ttagttggactagtttgtttttgttaggactgccttttctttttacccagCAACCCCAGTGCTAAGCTGTCAAGCTGCGACCAAGACAGAAAGAAGATTAGATCTTGCCACAGTGACTCTAAGGAGGGGTTCACGGCCGCGGGCATCGAGATGCAGGCCTCGGTCACTTGTTGATTACAGGTCATACATTGACACAAAGCTACTGGTGGCTGGCTTTCTTCAGCAGTCATCTTGCAGCATGACTCCAGGTATTCATGAACTGGTGGAGAACATAAAGTCTGTACTAAAATCTTATGAGGGACATATGGAAGGAGCTATAACAAGTGCTAGTTTCTTGGAACAAgtagggtacctcctataccctagacttatatctagtatgtaaggcctcac Alignment from Exonerate_coding2genome CTACCCCGGTGCTCAGCTGCGAAGCTGCAACGCAGACAGAAAGGAGGCTAGATCTCGCTACAGTGACTCTGAGGAGAGGCGCGAGGCCACGGGCATCAAGATGCAGACCCCGCTCTCTGATAGATTACAGGTCATACATAGACACGAAGCTGCTAGTGGCCAGGTTCCTGGAGCAGTCCTCCTGCAGCATGACTCCGGACATTCATGAACTTGTAGAGAACATAAAGTCTGTTCTGAAATCCGATGAGGGGCACATGGAAGAAGCCATCACGAGTGCCAGTTTCCTAGAGCAG ttagttggactagtttgtttttgttaggactgccttttctttttacccagCAACCCCAGTGCTAAGCTGTCAAGCTGCGACCAAGACAGAAAGAAGATTAGATCTTGCCACAGTGACTCTAAGGAGGGGTTCACGGCCGCGGGCATCGAGATGCAGGCCTCGGTCACTTGTTGATTACAGGTCATACATTGACACAAAGCTACTGGTGGCTGGCTTTCTTCAGCAGTCATCTTGCAGCATGACTCCAGGTATTCATGAACTGGTGGAGAACATAAAGTCTGTACTAAAATCTTATGAGGGACATATGGAAGGAGCTATAACAAGTGCTAGTTTCTTGGAACAAgtagggtacctcctataccctagacttatatctagtatgtaaggcctcac Alignment from GeneWise CTACCCCGGTGCTCAGCTGCGAAGCTGCAACGCAGACAGAAAGGAGGCTAGATCTCGCTACAGTGACTCTGAGGAGAGGCGCGAGGCCACGGGCATCAAGATGCAGACCCCGCTCTCTGATAGATTACAGGTCATACATAGACACGAAGCTGCTAGTGGCCAGGTTCCTGGAGCAGTCCTCCTGCAGCATGACTCCGGACATTCATGAACTTGTAGAGAACATAAAGTCTGTTCTGAAATCCGATGAGGGGCACATGGAAGAAGCCATCACGAGTGCCAGTTTCCTAGAGCAG ttagttggactagtttgtttttgttaggactgccttttctttttacccagCAACCCCAGTGCTAAGCTGTCAAGCTGCGACCAAGACAGAAAGAAGATTAGATCTTGCCACAGTGACTCTAAGGAGGGGTTCACGGCCGCGGGCATCGAGATGCAGGCCTCGGTCACTTGTTGATTACAGGTCATACATTGACACAAAGCTACTGGTGGCTGGCTTTCTTCAGCAGTCATCTTGCAGCATGACTCCAGGTATTCATGAACTGGTGGAGAACATAAAGTCTGTACTAAAATCTTATGAGGGACATATGGAAGGAGCTATAACAAGTGCTAGTTTCTTGGAACAAgtagggtacctcctataccctagacttatatctagtatgtaaggcctcac #### Fam189a2_ID5250_8 --> 0 - 1 Original Alignment GAGTCTTCATTCCAAATGCCAGAAGGACCAGAAACTGCTGCGAGCCCAGCAGAGCCAGTTTGCACGCAGATAACTCAAg aagcaagaatcaaaaaataatgtcccctgctctctctctcctgttcacagGAAACATCATTCCAAATGCCTGTAGGTCCAGAAACTGCTGCAAGCCCCACAGAGCCAGTTTGTACACAGATTAGCCAAggtgtgcactgttgtaccatgccatgggaatagggagctctatagaagaca Alignment from CESAR GAGTCTTCATTCCAAATGCCAGAAGGACCAGAAACTGCTGCGAGCCCAGCAGAGCCAGTTTGCACGCAGATAACTCAAg aagcaagaatcaaaaaataatgtcccctgctctctctctcctgttcacagGAAACATCATTCCAAATGCCTGTAGGTCCAGAAACTGCTGCAAGCCCCACAGAGCCAGTTTGTACACAGATTAGCCAAggtgtgcactgttgtaccatgccatgggaatagggagctctatagaagaca Alignment from Spaln_aa2Genome GAGTCTTCATTCCAAATGCCAGAAGGACCAGAAACTGCTGCGAGCCCAGCAGAGCCAGTTTGCACGCAGATAACTCAAG aagcaagaatcaaaaaataatgtcccctgctctctctctcctgttcacagGAAACATCATTCCAAATGCCTGTAGGTCCAGAAACTGCTGCAAGCCCCACAGAGCCAGTTTGTACACAGATTAGCCAAGgtgtgcactgttgtaccatgccatgggaatagggagctctatagaagaca Alignment from Spaln_nt2Genome GAGTCTTCATTCCAAATGCCAGAAGGACCAGAAACTGCTGCGAGCCCAGCAGAGCCAGTTTGCACGCAGATAACTCAAG aagcaagaatcaaaaaataatgtcccctgctctctctctcctgttcacagGAAACATCATTCCAAATGCCTGTAGGTCCAGAAACTGCTGCAAGCCCCACAGAGCCAGTTTGTACACAGATTAGCCAAGgtgtgcactgttgtaccatgccatgggaatagggagctctatagaagaca Alignment from Pairagon GAGTCTTCATTCCAAATGCCAGAAGGACCAGAAACTGCTGCGAGCCCAGCAGAGCCAGTTTGCACGCAGATAACTCAAG aagcaagaatcaaaaaataatgtcccctgctctctctctcctgttcacagGAAACATCATTCCAAATGCCTGTAGGTCCAGAAACTGCTGCAAGCCCCACAGAGCCAGTTTGTACACAGATTAGCCAAGgtgtgcactgttgtaccatgccatgggaatagggagctctatagaagaca Alignment from Exonerate_protein2genome GAGTCTTCATTCCAAATGCCAGAAGGACCAGAAACTGCTGCGAGCCCAGCAGAGCCAGTTTGCACGCAGATAACTCAAG aagcaagaatcaaaaaataatgtcccctgctctctctctcctgttcacagGAAACATCATTCCAAATGCCTGTAGGTCCAGAAACTGCTGCAAGCCCCACAGAGCCAGTTTGTACACAGATTAGCCAAGgtgtgcactgttgtaccatgccatgggaatagggagctctatagaagaca Alignment from Exonerate_coding2genome GAGTCTTCATTCCAAATGCCAGAAGGACCAGAAACTGCTGCGAGCCCAGCAGAGCCAGTTTGCACGCAGATAACTCAAG aagcaagaatcaaaaaataatgtcccctgctctctctctcctgttcacagGAAACATCATTCCAAATGCCTGTAGGTCCAGAAACTGCTGCAAGCCCCACAGAGCCAGTTTGTACACAGATTAGCCAAGgtgtgcactgttgtaccatgccatgggaatagggagctctatagaagaca Alignment from GeneWise GAGTCTTCATTCCAAATGCCAGAAGGACCAGAAACTGCTGCGAGCCCAGCAGAGCCAGTTTGCACGCAGATAACTCAAG aagcaagaatcaaaaaataatgtcccctgctctctctctcctgttcacagGAAACATCATTCCAAATGCCTGTAGGTCCAGAAACTGCTGCAAGCCCCACAGAGCCAGTTTGTACACAGATTAGCCAAGgtgtgcactgttgtaccatgccatgggaatagggagctctatagaagaca #### Fam189a2_ID5251_7 --> 1 - 0 Original Alignment gATGGTTGGTTCTGATGTCATCCCACTGCCCCATATCTATGGAGCACGCATCAAGGGTGTGGAAGTGTTCTGTCCTCTGGACCCCCCACCTCCATACGAAGCTGTAGTGAGCCAGACTGACCAGGAGCAG caccacccctcagcttatgcctgtatcttaagtcattgtttccctttcaggATGGTTGGTTCTGATGTCATCCCACTACCTCACATCTATGGGGCGCGCATAAAGGGTGTAGAAGTGTTTCATCCTCTGGAGCCTCCCCCTCCATATGAAGCTGTAGTGAGTAAAGCTGATCTAGAGCAGgtcagtccacttaagggtatcccagattcaagcctcctctctcctctctt Alignment from CESAR gATGGTTGGTTCTGATGTCATCCCACTGCCCCATATCTATGGAGCACGCATCAAGGGTGTGGAAGTGTTCTGTCCTCTGGACCCCCCACCTCCATACGAAGCTGTAGTGAGCCAGACTGACCAGGAGCAG caccacccctcagcttatgcctgtatcttaagtcattgtttccctttcaggATGGTTGGTTCTGATGTCATCCCACTACCTCACATCTATGGGGCGCGCATAAAGGGTGTAGAAGTGTTTCATCCTCTGGAGCCTCCCCCTCCATATGAAGCTGTAGTGAGTAAAGCTGATCTAGAGCAGgtcagtccacttaagggtatcccagattcaagcctcctctctcctctctt Alignment from Spaln_aa2Genome GATGGTTGGTTCTGATGTCATCCCACTGCCCCATATCTATGGAGCACGCATCAAGGGTGTGGAAGTGTTCTGTCCTCTGGACCCCCCACCTCCATACGAAGCTGTAGTGAGCCAGACTGACCAGGAGCAG caccacccctcagcttatgcctgtatcttaagtcattgtttccctttcagGATGGTTGGTTCTGATGTCATCCCACTACCTCACATCTATGGGGCGCGCATAAAGGGTGTAGAAGTGTTTCATCCTCTGGAGCCTCCCCCTCCATATGAAGCTGTAGTGAGTAAAGCTGATCTAGAGCAGgtcagtccacttaagggtatcccagattcaagcctcctctctcctctctt Alignment from Spaln_nt2Genome GATGGTTGGTTCTGATGTCATCCCACTGCCCCATATCTATGGAGCACGCATCAAGGGTGTGGAAGTGTTCTGTCCTCTGGACCCCCCACCTCCATACGAAGCTGTAGTGAGCCAGACTGACCAGGAGCAG caccacccctcagcttatgcctgtatcttaagtcattgtttccctttcagGATGGTTGGTTCTGATGTCATCCCACTACCTCACATCTATGGGGCGCGCATAAAGGGTGTAGAAGTGTTTCATCCTCTGGAGCCTCCCCCTCCATATGAAGCTGTAGTGAGTAAAGCTGATCTAGAGCAGgtcagtccacttaagggtatcccagattcaagcctcctctctcctctctt Alignment from Pairagon GATGGTTGGTTCTGATGTCATCCCACTGCCCCATATCTATGGAGCACGCATCAAGGGTGTGGAAGTGTTCTGTCCTCTGGACCCCCCACCTCCATACGAAGCTGTAGTGAGCCAGACTGACCAGGAGCAG caccacccctcagcttatgcctgtatcttaagtcattgtttccctttcagGATGGTTGGTTCTGATGTCATCCCACTACCTCACATCTATGGGGCGCGCATAAAGGGTGTAGAAGTGTTTCATCCTCTGGAGCCTCCCCCTCCATATGAAGCTGTAGTGAGTAAAGCTGATCTAGAGCAGgtcagtccacttaagggtatcccagattcaagcctcctctctcctctctt Alignment from Exonerate_protein2genome GATGGTTGGTTCTGATGTCATCCCACTGCCCCATATCTATGGAGCACGCATCAAGGGTGTGGAAGTGTTCTGTCCTCTGGACCCCCCACCTCCATACGAAGCTGTAGTGAGCCAGACTGACCAGGAGCAG caccacccctcagcttatgcctgtatcttaagtcattgtttccctttcagGATGGTTGGTTCTGATGTCATCCCACTACCTCACATCTATGGGGCGCGCATAAAGGGTGTAGAAGTGTTTCATCCTCTGGAGCCTCCCCCTCCATATGAAGCTGTAGTGAGTAAAGCTGATCTAGAGCAGgtcagtccacttaagggtatcccagattcaagcctcctctctcctctctt Alignment from Exonerate_coding2genome GATGGTTGGTTCTGATGTCATCCCACTGCCCCATATCTATGGAGCACGCATCAAGGGTGTGGAAGTGTTCTGTCCTCTGGACCCCCCACCTCCATACGAAGCTGTAGTGAGCCAGACTGACCAGGAGCAG caccacccctcagcttatgcctgtatcttaagtcattgtttccctttcagGATGGTTGGTTCTGATGTCATCCCACTACCTCACATCTATGGGGCGCGCATAAAGGGTGTAGAAGTGTTTCATCCTCTGGAGCCTCCCCCTCCATATGAAGCTGTAGTGAGTAAAGCTGATCTAGAGCAGgtcagtccacttaagggtatcccagattcaagcctcctctctcctctctt Alignment from GeneWise GATGGTTGGTTCTGATGTCATCCCACTGCCCCATATCTATGGAGCACGCATCAAGGGTGTGGAAGTGTTCTGTCCTCTGGACCCCCCACCTCCATACGAAGCTGTAGTGAGCCAGACTGACCAGGAGCAG caccacccctcagcttatgcctgtatcttaagtcattgtttccctttcagGATGGTTGGTTCTGATGTCATCCCACTACCTCACATCTATGGGGCGCGCATAAAGGGTGTAGAAGTGTTTCATCCTCTGGAGCCTCCCCCTCCATATGAAGCTGTAGTGAGTAAAGCTGATCTAGAGCAGgtcagtccacttaagggtatcccagattcaagcctcctctctcctctctt #### Fam189a2_ID5257_4 --> 0 - 0 Original Alignment GTGGACTTAGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAATGCACAGACAAAGAAAATGCCTTGAAACTCTTCCCGGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAG ttactatgtgcaatcttcctccccagaagaatgagggttatattttgcagGTGGACTTGGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAGTGTACAGACAAAGAAAATGCCTTGAAACTCTTCCCAGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAGgtgggctgggcaatctctcaccttagagccccagcaaactcaagctacta Alignment from CESAR GTGGACTTAGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAATGCACAGACAAAGAAAATGCCTTGAAACTCTTCCCGGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAG ttactatgtgcaatcttcctccccagaagaatgagggttatattttgcagGTGGACTTGGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAGTGTACAGACAAAGAAAATGCCTTGAAACTCTTCCCAGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAGgtgggctgggcaatctctcaccttagagccccagcaaactcaagctacta Alignment from Spaln_aa2Genome GTGGACTTAGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAATGCACAGACAAAGAAAATGCCTTGAAACTCTTCCCGGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAG ttactatgtgcaatcttcctccccagaagaatgagggttatattttgcagGTGGACTTGGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAGTGTACAGACAAAGAAAATGCCTTGAAACTCTTCCCAGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAGgtgggctgggcaatctctcaccttagagccccagcaaactcaagctacta Alignment from Spaln_nt2Genome GTGGACTTAGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAATGCACAGACAAAGAAAATGCCTTGAAACTCTTCCCGGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAG ttactatgtgcaatcttcctccccagaagaatgagggttatattttgcagGTGGACTTGGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAGTGTACAGACAAAGAAAATGCCTTGAAACTCTTCCCAGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAGgtgggctgggcaatctctcaccttagagccccagcaaactcaagctacta Alignment from Pairagon GTGGACTTAGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAATGCACAGACAAAGAAAATGCCTTGAAACTCTTCCCGGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAG ttactatgtgcaatcttcctccccagaagaatgagggttatattttgcagGTGGACTTGGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAGTGTACAGACAAAGAAAATGCCTTGAAACTCTTCCCAGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAGgtgggctgggcaatctctcaccttagagccccagcaaactcaagctacta Alignment from Exonerate_protein2genome GTGGACTTAGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAATGCACAGACAAAGAAAATGCCTTGAAACTCTTCCCGGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAG ttactatgtgcaatcttcctccccagaagaatgagggttatattttgcagGTGGACTTGGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAGTGTACAGACAAAGAAAATGCCTTGAAACTCTTCCCAGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAGgtgggctgggcaatctctcaccttagagccccagcaaactcaagctacta Alignment from Exonerate_coding2genome GTGGACTTAGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAATGCACAGACAAAGAAAATGCCTTGAAACTCTTCCCGGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAG ttactatgtgcaatcttcctccccagaagaatgagggttatattttgcagGTGGACTTGGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAGTGTACAGACAAAGAAAATGCCTTGAAACTCTTCCCAGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAGgtgggctgggcaatctctcaccttagagccccagcaaactcaagctacta Alignment from GeneWise GTGGACTTAGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAATGCACAGACAAAGAAAATGCCTTGAAACTCTTCCCGGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAG ttactatgtgcaatcttcctccccagaagaatgagggttatattttgcagGTGGACTTGGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAGTGTACAGACAAAGAAAATGCCTTGAAACTCTTCCCAGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAGgtgggctgggcaatctctcaccttagagccccagcaaactcaagctacta #### Fas_ID6922_3 --> 2 - 1 Original Alignment gtAAAAAAAAAGTTGAGGACTGCAAAATGAATGGGGGTACACCAACCTGCGCCCCATGCACAGAAGGGAAGGAGTACATGGACAAGAACCATTATGCTGATAAATGCAGAAGATGCACACTCTGCGATGAAGAGCATg cctctcctgcttactaatccttgcatagttaagtgtttatctacctacagggAAAATAAGTATTGAAGACTGCAAAATGAATGGGGGTACACCAACCTGTGACCCATGCACCAAAGGGAAGAAGTACATGGACAAGAACCACTATTCTGATAAGTGCAGAACATGCACTCTCTCTGATGAAGAACATggtaagcagctagacatgttccgtaatggccaacactgtgactcccaacat Alignment from CESAR gtAAAAAAAAAGTTGAGGACTGCAAAATGAATGGGGGTACACCAACCTGCGCCCCATGCACAGAAGGGAAGGAGTACATGGACAAGAACCATTATGCTGATAAATGCAGAAGATGCACACTCTGCGATGAAGAGCATg cctctcctgcttactaatccttgcatagttaagtgtttatctacctacagggAAAATAAGTATTGAAGACTGCAAAATGAATGGGGGTACACCAACCTGTGACCCATGCACCAAAGGGAAGAAGTACATGGACAAGAACCACTATTCTGATAAGTGCAGAACATGCACTCTCTCTGATGAAGAACATggtaagcagctagacatgttccgtaatggccaacactgtgactcccaacat Alignment from Spaln_aa2Genome GTAAAAAAAAAGTTGAGGACTGCAAAATGAATGGGGGTACACCAACCTGCGCCCCATGCACAGAAGGGAAGGAGTACATGGACAAGAACCATTATGCTGATAAATGCAGAAGATGCACACTCTGCGATGAAGAGCATG cctctcctgcttactaatccttgcatagttaagtgtttatctacctacagGGAAAATAAGTATTGAAGACTGCAAAATGAATGGGGGTACACCAACCTGTGACCCATGCACCAAAGGGAAGAAGTACATGGACAAGAACCACTATTCTGATAAGTGCAGAACATGCACTCTCTCTGATGAAGAACATGgtaagcagctagacatgttccgtaatggccaacactgtgactcccaacat Alignment from Spaln_nt2Genome GTAAAAAAAAAGTTGAGGACTGCAAAATGAATGGGGGTACACCAACCTGCGCCCCATGCACAGAAGGGAAGGAGTACATGGACAAGAACCATTATGCTGATAAATGCAGAAGATGCACACTCTGCGATGAAGAGCATG cctctcctgcttactaatccttgcatagttaagtgtttatctacctacagGGAAAATAAGTATTGAAGACTGCAAAATGAATGGGGGTACACCAACCTGTGACCCATGCACCAAAGGGAAGAAGTACATGGACAAGAACCACTATTCTGATAAGTGCAGAACATGCACTCTCTCTGATGAAGAACATGgtaagcagctagacatgttccgtaatggccaacactgtgactcccaacat Alignment from Pairagon GTAAAAAAAAAGTTGAGGACTGCAAAATGAATGGGGGTACACCAACCTGCGCCCCATGCACAGAAGGGAAGGAGTACATGGACAAGAACCATTATGCTGATAAATGCAGAAGATGCACACTCTGCGATGAAGAGCATG cctctcctgcttactaatccttgcatagttaagtgtttatctacctacagGGAAAATAAGTATTGAAGACTGCAAAATGAATGGGGGTACACCAACCTGTGACCCATGCACCAAAGGGAAGAAGTACATGGACAAGAACCACTATTCTGATAAGTGCAGAACATGCACTCTCTCTGATGAAGAACATGgtaagcagctagacatgttccgtaatggccaacactgtgactcccaacat Alignment from Exonerate_protein2genome GTAAAAAAAAAGTTGAGGACTGCAAAATGAATGGGGGTACACCAACCTGCGCCCCATGCACAGAAGGGAAGGAGTACATGGACAAGAACCATTATGCTGATAAATGCAGAAGATGCACACTCTGCGATGAAGAGCATG cctctcctgcttactaatccttgcatagttaagtgtttatctacctacagGGAAAATAAGTATTGAAGACTGCAAAATGAATGGGGGTACACCAACCTGTGACCCATGCACCAAAGGGAAGAAGTACATGGACAAGAACCACTATTCTGATAAGTGCAGAACATGCACTCTCTCTGATGAAGAACATGgtaagcagctagacatgttccgtaatggccaacactgtgactcccaacat Alignment from Exonerate_coding2genome GTAAAAAAAAAGTTGAGGACTGCAAAATGAATGGGGGTACACCAACCTGCGCCCCATGCACAGAAGGGAAGGAGTACATGGACAAGAACCATTATGCTGATAAATGCAGAAGATGCACACTCTGCGATGAAGAGCATG cctctcctgcttactaatccttgcatagttaagtgtttatctacctacagGGAAAATAAGTATTGAAGACTGCAAAATGAATGGGGGTACACCAACCTGTGACCCATGCACCAAAGGGAAGAAGTACATGGACAAGAACCACTATTCTGATAAGTGCAGAACATGCACTCTCTCTGATGAAGAACATGgtaagcagctagacatgttccgtaatggccaacactgtgactcccaacat Alignment from GeneWise GTAAAAAAAAAGTTGAGGACTGCAAAATGAATGGGGGTACACCAACCTGCGCCCCATGCACAGAAGGGAAGGAGTACATGGACAAGAACCATTATGCTGATAAATGCAGAAGATGCACACTCTGCGATGAAGAGCATG cctctcctgcttactaatccttgcatagttaagtgtttatctacctacagGGAAAATAAGTATTGAAGACTGCAAAATGAATGGGGGTACACCAACCTGTGACCCATGCACCAAAGGGAAGAAGTACATGGACAAGAACCACTATTCTGATAAGTGCAGAACATGCACTCTCTCTGATGAAGAACATGgtaagcagctagacatgttccgtaatggccaacactgtgactcccaacat #### Fibp_ID1005_2 --> 2 - 2 Original Alignment tgAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGag cagggccttctagtgttatatccctcaccctgttttaatttaattttcagtgAATGATGCAGTGGCCCTCCATGTTCGTTCTGGTATCTTAGAACAGACTGGGGCCACTACAGGAGTGCTGCAGACTGACACAATGGATCACTACCGAACCTTTCGCATGCTTGAACGACTACTATGTTCACCCCCAAAGCTCCTG------CTTGTATTTCAGATTCCTCCTGCCCGACAGACTCTCCTCATTGAAaggtgagaaacaggatgattagtggggtgggtcctggccagagggtcattct Alignment from CESAR tgAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGag cagggccttctagtgttatatccctcaccctgttttaatttaattttcagtgAATGATGCAGTGGCCCTCCATGTTCGTTCTGGTATCTTAGAACAGACTGGGGCCACTACAGGAGTGCTGCAGACTGACACAATGGATCACTACCGAACCTTTCGCATGCTTGAACGACTACTATGTTCACCCCCAAAGCTCCTG------CTTGTATTTCAGATTCCTCCTGCCCGACAGACTCTCCTCATTGAAaggtgagaaacaggatgattagtggggtgggtcctggccagagggtcattct Alignment from Spaln_aa2Genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG cagggccttctagtgttatatccctcaccctgttttaatttaattttcagTGAATGATGCAGTGGCCCTCCATGTTCGTTCTGGTATCTTAGAACAGACTGGGGCCACTACAGGAGTGCTGCAGACTGACACAATGGATCACTACCGAACCTTTCGCATGCTTGAACGACTACTATGTTCACCCCCAAAGCTCCTG------CTTGTATTTCAGATTCCTCCTGCCCGACAGACTCTCCTCATTGAAAGgtgagaaacaggatgattagtggggtgggtcctggccagagggtcattct Alignment from Spaln_nt2Genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG cagggccttctagtgttatatccctcaccctgttttaatttaattttcagTGAATGATGCAGTGGCCCTCCATGTTCGTTCTGGTATCTTAGAACAGACTGGGGCCACTACAGGAGTGCTGCAGACTGACACAATGGATCACTACCGAACCTTTCGCATGCTTGAACGACTACTATGTTCACCCCCAAAGCT------CCTGCTTGTATTTCAGATTCCTCCTGCCCGACAGACTCTCCTCATTGAAAGgtgagaaacaggatgattagtggggtgggtcctggccagagggtcattct Alignment from Pairagon TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTC-------------------------CAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG cagggccttctagtgttatatccctcaccctgttttaatttaattttcagTGAATGATGCAGTGGCCCTCCATGTTCGTTCTGGTATCTTAGAACAGACTGGGGCCACTACAGGAGTGCTGCAGACTGACACAATGGATCACTACCGAACCTTTCGCATGCTTGAACGACTACT-------------------------------ATGTTCACCCCCAAAGCTCCTGCTTGTATTTCAGATTCCTCCTGCCCGACAGACTCTCCTCATTGAAAGgtgagaaacaggatgattagtggggtgggtcctggccagagggtcattct Alignment from Exonerate_protein2genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG cagggccttctagtgttatatccctcaccctgttttaatttaattttcagTGAATGATGCAGTGGCCCTCCATGTTCGTTCTGGTATCTTAGAACAGACTGGGGCCACTACAGGAGTGCTGCAGACTGACACAATGGATCACTACCGAACCTTTCGCATGCTTGAACGACTACTATGTTCACCCCCAAAGCTCCTG------CTTGTATTTCAGATTCCTCCTGCCCGACAGACTCTCCTCATTGAAAGgtgagaaacaggatgattagtggggtgggtcctggccagagggtcattct Alignment from Exonerate_coding2genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG cagggccttctagtgttatatccctcaccctgttttaatttaattttcagTGAATGATGCAGTGGCCCTCCATGTTCGTTCTGGTATCTTAGAACAGACTGGGGCCACTACAGGAGTGCTGCAGACTGACACAATGGATCACTACCGAACCTTTCGCATGCTTGAACGACTACTATGTTCACCCCCAAAGCTCCTG------CTTGTATTTCAGATTCCTCCTGCCCGACAGACTCTCCTCATTGAAAGgtgagaaacaggatgattagtggggtgggtcctggccagagggtcattct Alignment from GeneWise TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG cagggccttctagtgttatatccctcaccctgttttaatttaattttcagTGAATGATGCAGTGGCCCTCCATGTTCGTTCTGGTATCTTAGAACAGACTGGGGCCACTACAGGAGTGCTGCAGACTGACACAATGGATCACTACCGAACCTTTCGCATGCTTGAACGACTACTATGTTCACCCCCAAAGCTCCTG------CTTGTATTTCAGATTCCTCCTGCCCGACAGACTCTCCTCATTGAAAGgtgagaaacaggatgattagtggggtgggtcctggccagagggtcattct #### Fibp_ID1006_3 --> 1 - 0 Original Alignment gTACTACACCTTTGATGAGGCCTTTGTTCGGGAGGTCTTGGGCAAGAAGCTGTCCAAGGGTACCAAGAAAGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAG tcaatttccccactggtgtatataactacatgtgcactttttcctcttaggTACTACACCTTTGATGAGGCCTTTGTTCGGGAAGTCTTGGGCGAGAAGCTGTCCAAGGGTACCAAGAAGGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAGgtaagcaattcccttgatctgactcatcgggcccactcatttaactagtg Alignment from CESAR gTACTACACCTTTGATGAGGCCTTTGTTCGGGAGGTCTTGGGCAAGAAGCTGTCCAAGGGTACCAAGAAAGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAG tcaatttccccactggtgtatataactacatgtgcactttttcctcttaggTACTACACCTTTGATGAGGCCTTTGTTCGGGAAGTCTTGGGCGAGAAGCTGTCCAAGGGTACCAAGAAGGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAGgtaagcaattcccttgatctgactcatcgggcccactcatttaactagtg Alignment from Spaln_aa2Genome GTACTACACCTTTGATGAGGCCTTTGTTCGGGAGGTCTTGGGCAAGAAGCTGTCCAAGGGTACCAAGAAAGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAG tcaatttccccactggtgtatataactacatgtgcactttttcctcttagGTACTACACCTTTGATGAGGCCTTTGTTCGGGAAGTCTTGGGCGAGAAGCTGTCCAAGGGTACCAAGAAGGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAGgtaagcaattcccttgatctgactcatcgggcccactcatttaactagtg Alignment from Spaln_nt2Genome GTACTACACCTTTGATGAGGCCTTTGTTCGGGAGGTCTTGGGCAAGAAGCTGTCCAAGGGTACCAAGAAAGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAG tcaatttccccactggtgtatataactacatgtgcactttttcctcttagGTACTACACCTTTGATGAGGCCTTTGTTCGGGAAGTCTTGGGCGAGAAGCTGTCCAAGGGTACCAAGAAGGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAGgtaagcaattcccttgatctgactcatcgggcccactcatttaactagtg Alignment from Pairagon GTACTACACCTTTGATGAGGCCTTTGTTCGGGAGGTCTTGGGCAAGAAGCTGTCCAAGGGTACCAAGAAAGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAG tcaatttccccactggtgtatataactacatgtgcactttttcctcttagGTACTACACCTTTGATGAGGCCTTTGTTCGGGAAGTCTTGGGCGAGAAGCTGTCCAAGGGTACCAAGAAGGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAGgtaagcaattcccttgatctgactcatcgggcccactcatttaactagtg Alignment from Exonerate_protein2genome GTACTACACCTTTGATGAGGCCTTTGTTCGGGAGGTCTTGGGCAAGAAGCTGTCCAAGGGTACCAAGAAAGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAG tcaatttccccactggtgtatataactacatgtgcactttttcctcttagGTACTACACCTTTGATGAGGCCTTTGTTCGGGAAGTCTTGGGCGAGAAGCTGTCCAAGGGTACCAAGAAGGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAGgtaagcaattcccttgatctgactcatcgggcccactcatttaactagtg Alignment from Exonerate_coding2genome GTACTACACCTTTGATGAGGCCTTTGTTCGGGAGGTCTTGGGCAAGAAGCTGTCCAAGGGTACCAAGAAAGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAG tcaatttccccactggtgtatataactacatgtgcactttttcctcttagGTACTACACCTTTGATGAGGCCTTTGTTCGGGAAGTCTTGGGCGAGAAGCTGTCCAAGGGTACCAAGAAGGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAGgtaagcaattcccttgatctgactcatcgggcccactcatttaactagtg Alignment from GeneWise GTACTACACCTTTGATGAGGCCTTTGTTCGGGAGGTCTTGGGCAAGAAGCTGTCCAAGGGTACCAAGAAAGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAG tcaatttccccactggtgtatataactacatgtgcactttttcctcttagGTACTACACCTTTGATGAGGCCTTTGTTCGGGAAGTCTTGGGCGAGAAGCTGTCCAAGGGTACCAAGAAGGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAGgtaagcaattcccttgatctgactcatcgggcccactcatttaactagtg #### Fibp_ID1008_5 --> 1 - 1 Original Alignment gGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAg ttcaagtataagagagataaagagcataggtgaccaactgttttcctcaggGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAAACTGGGAAAAAAAGGCTGCAGCACCTGAGCTTTGGGGCCTTTGCCTTCCGCGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAggtgcgtaaactcccctcatggtgctccataccactcatggctcttatcat Alignment from CESAR gGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAg ttcaagtataagagagataaagagcataggtgaccaactgttttcctcaggGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAAACTGGGAAAAAAAGGCTGCAGCACCTGAGCTTTGGGGCCTTTGCCTTCCGCGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAggtgcgtaaactcccctcatggtgctccataccactcatggctcttatcat Alignment from Spaln_aa2Genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagagagataaagagcataggtgaccaactgttttcctcagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAAACTGGGAAAAAAAGGCTGCAGCACCTGAGCTTTGGGGCCTTTGCCTTCCGCGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtgcgtaaactcccctcatggtgctccataccactcatggctcttatcat Alignment from Spaln_nt2Genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagagagataaagagcataggtgaccaactgttttcctcagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAAACTGGGAAAAAAAGGCTGCAGCACCTGAGCTTTGGGGCCTTTGCCTTCCGCGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtgcgtaaactcccctcatggtgctccataccactcatggctcttatcat Alignment from Pairagon GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagagagataaagagcataggtgaccaactgttttcctcagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAAACTGGGAAAAAAAGGCTGCAGCACCTGAGCTTTGGGGCCTTTGCCTTCCGCGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtgcgtaaactcccctcatggtgctccataccactcatggctcttatcat Alignment from Exonerate_protein2genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagagagataaagagcataggtgaccaactgttttcctcagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAAACTGGGAAAAAAAGGCTGCAGCACCTGAGCTTTGGGGCCTTTGCCTTCCGCGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtgcgtaaactcccctcatggtgctccataccactcatggctcttatcat Alignment from Exonerate_coding2genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagagagataaagagcataggtgaccaactgttttcctcagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAAACTGGGAAAAAAAGGCTGCAGCACCTGAGCTTTGGGGCCTTTGCCTTCCGCGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtgcgtaaactcccctcatggtgctccataccactcatggctcttatcat Alignment from GeneWise GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagagagataaagagcataggtgaccaactgttttcctcagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAAACTGGGAAAAAAAGGCTGCAGCACCTGAGCTTTGGGGCCTTTGCCTTCCGCGCAGAACTCATGATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtgcgtaaactcccctcatggtgctccataccactcatggctcttatcat #### Fibp_ID1010_7 --> 1 - 0 Original Alignment cCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG ctgaacttactatactcagtctacagaacctcctactgtgcctcctgcagcCTAGTCTGCACTGCCCTTCGTGGAAAACTTGGTGTCTTCTCTGAGATGGAATCCAACTTCAAGgtgagtttgcttggcatccatagtcccctggttagatcactgagtgcctt Alignment from CESAR cCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG ctgaacttactatactcagtctacagaacctcctactgtgcctcctgcagcCTAGTCTGCACTGCCCTTCGTGGAAAACTTGGTGTCTTCTCTGAGATGGAATCCAACTTCAAGgtgagtttgcttggcatccatagtcccctggttagatcactgagtgcctt Alignment from Spaln_aa2Genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG ctgaacttactatactcagtctacagaacctcctactgtgcctcctgcagCCTAGTCTGCACTGCCCTTCGTGGAAAACTTGGTGTCTTCTCTGAGATGGAATCCAACTTCAAGgtgagtttgcttggcatccatagtcccctggttagatcactgagtgcctt Alignment from Spaln_nt2Genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG ctgaacttactatactcagtctacagaacctcctactgtgcctcctgcagCCTAGTCTGCACTGCCCTTCGTGGAAAACTTGGTGTCTTCTCTGAGATGGAATCCAACTTCAAGgtgagtttgcttggcatccatagtcccctggttagatcactgagtgcctt Alignment from Pairagon CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG ctgaacttactatactcagtctacagaacctcctactgtgcctcctgcagCCTAGTCTGCACTGCCCTTCGTGGAAAACTTGGTGTCTTCTCTGAGATGGAATCCAACTTCAAGgtgagtttgcttggcatccatagtcccctggttagatcactgagtgcctt Alignment from Exonerate_protein2genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG ctgaacttactatactcagtctacagaacctcctactgtgcctcctgcagCCTAGTCTGCACTGCCCTTCGTGGAAAACTTGGTGTCTTCTCTGAGATGGAATCCAACTTCAAGgtgagtttgcttggcatccatagtcccctggttagatcactgagtgcctt Alignment from Exonerate_coding2genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG ctgaacttactatactcagtctacagaacctcctactgtgcctcctgcagCCTAGTCTGCACTGCCCTTCGTGGAAAACTTGGTGTCTTCTCTGAGATGGAATCCAACTTCAAGgtgagtttgcttggcatccatagtcccctggttagatcactgagtgcctt Alignment from GeneWise CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG ctgaacttactatactcagtctacagaacctcctactgtgcctcctgcagCCTAGTCTGCACTGCCCTTCGTGGAAAACTTGGTGTCTTCTCTGAGATGGAATCCAACTTCAAGgtgagtttgcttggcatccatagtcccctggttagatcactgagtgcctt #### Fibp_ID1012_9 --> 0 - 2 Original Alignment TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCcg agatgtgttgtagtaagtttttggtgaatcctaagtgtcttcctcctcagTTCGTAGAACCATGCCGGTCTGACCACTGGCCACTGAGTGATGTCCAGCTTTTTCTTAGCCAGTATTCAGTTTCAGTACATTCCTTGGATGGATTCcggtgaggaggggtaaacatgtttgctagctttgtcggtctagtttaaggtt Alignment from CESAR TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCcg agatgtgttgtagtaagtttttggtgaatcctaagtgtcttcctcctcagTTCGTAGAACCATGCCGGTCTGACCACTGGCCACTGAGTGATGTCCAGCTTTTTCTTAGCCAGTATTCAGTTTCAGTACATTCCTTGGATGGATTCcggtgaggaggggtaaacatgtttgctagctttgtcggtctagtttaaggtt Alignment from Spaln_aa2Genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG agatgtgttgtagtaagtttttggtgaatcctaagtgtcttcctcctcagTTCGTAGAACCATGCCGGTCTGACCACTGGCCACTGAGTGATGTCCAGCTTTTTCTTAGCCAGTATTCAGTTTCAGTACATTCCTTGGATGGATTCCGgtgaggaggggtaaacatgtttgctagctttgtcggtctagtttaaggtt Alignment from Spaln_nt2Genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG agatgtgttgtagtaagtttttggtgaatcctaagtgtcttcctcctcagTTCGTAGAACCATGCCGGTCTGACCACTGGCCACTGAGTGATGTCCAGCTTTTTCTTAGCCAGTATTCAGTTTCAGTACATTCCTTGGATGGATTCCGgtgaggaggggtaaacatgtttgctagctttgtcggtctagtttaaggtt Alignment from Pairagon TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG agatgtgttgtagtaagtttttggtgaatcctaagtgtcttcctcctcagTTCGTAGAACCATGCCGGTCTGACCACTGGCCACTGAGTGATGTCCAGCTTTTTCTTAGCCAGTATTCAGTTTCAGTACATTCCTTGGATGGATTCCGgtgaggaggggtaaacatgtttgctagctttgtcggtctagtttaaggtt Alignment from Exonerate_protein2genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG agatgtgttgtagtaagtttttggtgaatcctaagtgtcttcctcctcagTTCGTAGAACCATGCCGGTCTGACCACTGGCCACTGAGTGATGTCCAGCTTTTTCTTAGCCAGTATTCAGTTTCAGTACATTCCTTGGATGGATTCCGgtgaggaggggtaaacatgtttgctagctttgtcggtctagtttaaggtt Alignment from Exonerate_coding2genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG agatgtgttgtagtaagtttttggtgaatcctaagtgtcttcctcctcagTTCGTAGAACCATGCCGGTCTGACCACTGGCCACTGAGTGATGTCCAGCTTTTTCTTAGCCAGTATTCAGTTTCAGTACATTCCTTGGATGGATTCCGgtgaggaggggtaaacatgtttgctagctttgtcggtctagtttaaggtt Alignment from GeneWise --------------------------------------------------TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG AGATGTGTTGTAGTAAGTTTTTGGTGAATCCTAAGTGTCTTCCTCCTCAGTTCGTAGAACCATGCCGGTCTGACCACTGGCCACTGAGTGATGTCCAGCTTTTTCTTAGCCAGTATTCAGTTTCAGTACATTCCTTGGATGGATTCCGgtgaggaggggtaaacatgtttgctagctttgtcggtctagtttaaggtt #### Fra10ac1_ID7560_9 --> 2 - 2 Original Alignment gaTTATGCCAAGAATGTTCCTTTAAATTAAATTTTCATCACag tattgatgtaactaaatgactaaatgatcgcccattcctacctgctgcaggaTTATGCCAAGAGTGCTCCTTTAAATTAAATTTTCACCACcggtgagccttgtttggaaactatcatttctagagtttcgccatcctgctta Alignment from CESAR gaTTATGCCAAGAATGTTCCTTTAAATTAAATTTTCATCACag tattgatgtaactaaatgactaaatgatcgcccattcctacctgctgcaggaTTATGCCAAGAGTGCTCCTTTAAATTAAATTTTCACCACcggtgagccttgtttggaaactatcatttctagagtttcgccatcctgctta Alignment from Spaln_aa2Genome GATTATGCCAAGAATGTTCCTTTAAATTAAATTTTCATCACAG tattgatgtaactaaatgactaaatgatcgcccattcctacctgctgcagGATTATGCCAAGAGTGCTCCTTTAAATTAAATTTTCACCACCGgtgagccttgtttggaaactatcatttctagagtttcgccatcctgctta Alignment from Spaln_nt2Genome GATTATGCCAAGAATGTTCCTTTAAATTAAATTTTCATCACAG tattgatgtaactaaatgactaaatgatcgcccattcctacctgctgcagGATTATGCCAAGAGTGCTCCTTTAAATTAAATTTTCACCACCGgtgagccttgtttggaaactatcatttctagagtttcgccatcctgctta Alignment from Pairagon GATTATGCCAAGAATGTTCCTTTAAATTAAATTTTCATCACAG tattgatgtaactaaatgactaaatgatcgcccattcctacctgctgcagGATTATGCCAAGAGTGCTCCTTTAAATTAAATTTTCACCACCGgtgagccttgtttggaaactatcatttctagagtttcgccatcctgctta Alignment from Exonerate_protein2genome GATTATGCCAAGAATGTTCCTTTAAATTAAATTTTCATCACAG tattgatgtaactaaatgactaaatgatcgcccattcctacctgctgcagGATTATGCCAAGAGTGCTCCTTTAAATTAAATTTTCACCACCGgtgagccttgtttggaaactatcatttctagagtttcgccatcctgctta Alignment from Exonerate_coding2genome GATTATGCCAAGAATGTTCCTTTAAATTAAATTTTCATCACAG tattgatgtaactaaatgactaaatgatcgcccattcctacctgctgcagGATTATGCCAAGAGTGCTCCTTTAAATTAAATTTTCACCACCGgtgagccttgtttggaaactatcatttctagagtttcgccatcctgctta Alignment from GeneWise GATTATGCCAAGAATGTTCCTTTAAATTAAATTTTCATCACAG tattgatgtaactaaatgactaaatgatcgcccattcctacctgctgcagGATTATGCCAAGAGTGCTCCTTTAAATTAAATTTTCACCACCGgtgagccttgtttggaaactatcatttctagagtttcgccatcctgctta #### Fra10ac1_ID7564_6 --> 1 - 0 Original Alignment gGAGAAGAGACTTGCAAAGAAATACTATGATAAATTATTCAAGGAATACTGCATAGCTGATCTCAGTAGATACAAAGAAAATAAG gccatttgcattccacaaaggagtaatactctttcttttctccgtctcaggGAGAAAAGGCTCGCAAAGCAGTACTATGATAAATTATTTAAGGAATACTGTATAGCTGACCTCAGCAGATATAAAGAAAATAAGgtaaggccaaggatccctctctgctggtataaccctttctactggcactc Alignment from CESAR gGAGAAGAGACTTGCAAAGAAATACTATGATAAATTATTCAAGGAATACTGCATAGCTGATCTCAGTAGATACAAAGAAAATAAG gccatttgcattccacaaaggagtaatactctttcttttctccgtctcaggGAGAAAAGGCTCGCAAAGCAGTACTATGATAAATTATTTAAGGAATACTGTATAGCTGACCTCAGCAGATATAAAGAAAATAAGgtaaggccaaggatccctctctgctggtataaccctttctactggcactc Alignment from Spaln_aa2Genome GGAGAAGAGACTTGCAAAGAAATACTATGATAAATTATTCAAGGAATACTGCATAGCTGATCTCAGTAGATACAAAGAAAATAAG gccatttgcattccacaaaggagtaatactctttcttttctccgtctcagGGAGAAAAGGCTCGCAAAGCAGTACTATGATAAATTATTTAAGGAATACTGTATAGCTGACCTCAGCAGATATAAAGAAAATAAGgtaaggccaaggatccctctctgctggtataaccctttctactggcactc Alignment from Spaln_nt2Genome GGAGAAGAGACTTGCAAAGAAATACTATGATAAATTATTCAAGGAATACTGCATAGCTGATCTCAGTAGATACAAAGAAAATAAG gccatttgcattccacaaaggagtaatactctttcttttctccgtctcagGGAGAAAAGGCTCGCAAAGCAGTACTATGATAAATTATTTAAGGAATACTGTATAGCTGACCTCAGCAGATATAAAGAAAATAAGgtaaggccaaggatccctctctgctggtataaccctttctactggcactc Alignment from Pairagon GGAGAAGAGACTTGCAAAGAAATACTATGATAAATTATTCAAGGAATACTGCATAGCTGATCTCAGTAGATACAAAGAAAATAAG gccatttgcattccacaaaggagtaatactctttcttttctccgtctcagGGAGAAAAGGCTCGCAAAGCAGTACTATGATAAATTATTTAAGGAATACTGTATAGCTGACCTCAGCAGATATAAAGAAAATAAGgtaaggccaaggatccctctctgctggtataaccctttctactggcactc Alignment from Exonerate_protein2genome GGAGAAGAGACTTGCAAAGAAATACTATGATAAATTATTCAAGGAATACTGCATAGCTGATCTCAGTAGATACAAAGAAAATAAG gccatttgcattccacaaaggagtaatactctttcttttctccgtctcagGGAGAAAAGGCTCGCAAAGCAGTACTATGATAAATTATTTAAGGAATACTGTATAGCTGACCTCAGCAGATATAAAGAAAATAAGgtaaggccaaggatccctctctgctggtataaccctttctactggcactc Alignment from Exonerate_coding2genome GGAGAAGAGACTTGCAAAGAAATACTATGATAAATTATTCAAGGAATACTGCATAGCTGATCTCAGTAGATACAAAGAAAATAAG gccatttgcattccacaaaggagtaatactctttcttttctccgtctcagGGAGAAAAGGCTCGCAAAGCAGTACTATGATAAATTATTTAAGGAATACTGTATAGCTGACCTCAGCAGATATAAAGAAAATAAGgtaaggccaaggatccctctctgctggtataaccctttctactggcactc Alignment from GeneWise GGAGAAGAGACTTGCAAAGAAATACTATGATAAATTATTCAAGGAATACTGCATAGCTGATCTCAGTAGATACAAAGAAAATAAG gccatttgcattccacaaaggagtaatactctttcttttctccgtctcagGGAGAAAAGGCTCGCAAAGCAGTACTATGATAAATTATTTAAGGAATACTGTATAGCTGACCTCAGCAGATATAAAGAAAATAAGgtaaggccaaggatccctctctgctggtataaccctttctactggcactc #### Fra10ac1_ID7567_3 --> 1 - 0 Original Alignment gGAAGAAGCAAGAAATAGAAGGTTTCATCTCATAGCTATGGATGCT gattttgttaactaggcactggcgcttagttccccctcatgcctatctaggGAAGAAATGAGAAACAGAAGGTTTCACCTCATAGCTATGGATGCTgtaagcctacagacagagtctagttgttaaaacatactctagaacacatt Alignment from CESAR gGAAGAAGCAAGAAATAGAAGGTTTCATCTCATAGCTATGGATGCT gattttgttaactaggcactggcgcttagttccccctcatgcctatctaggGAAGAAATGAGAAACAGAAGGTTTCACCTCATAGCTATGGATGCTgtaagcctacagacagagtctagttgttaaaacatactctagaacacatt Alignment from Spaln_aa2Genome GGAAGAAGCAAGAAATAGAAGGTTTCATCTCATAGCTATGGATGCT gattttgttaactaggcactggcgcttagttccccctcatgcctatctagGGAAGAAATGAGAAACAGAAGGTTTCACCTCATAGCTATGGATGCTgtaagcctacagacagagtctagttgttaaaacatactctagaacacatt Alignment from Spaln_nt2Genome GGAAGAAGCAAGAAATAGAAGGTTTCATCTCATAGCTATGGATGCT gattttgttaactaggcactggcgcttagttccccctcatgcctatctagGGAAGAAATGAGAAACAGAAGGTTTCACCTCATAGCTATGGATGCTgtaagcctacagacagagtctagttgttaaaacatactctagaacacatt Alignment from Pairagon GGAAGAAGCAAGAAATAGAAGGTTTCATCTCATAGCTATGGATGCT gattttgttaactaggcactggcgcttagttccccctcatgcctatctagGGAAGAAATGAGAAACAGAAGGTTTCACCTCATAGCTATGGATGCTgtaagcctacagacagagtctagttgttaaaacatactctagaacacatt Alignment from Exonerate_protein2genome GGAAGAAGCAAGAAATAGAAGGTTTCATCTCATAGCTATGGATGCT gattttgttaactaggcactggcgcttagttccccctcatgcctatctagGGAAGAAATGAGAAACAGAAGGTTTCACCTCATAGCTATGGATGCTgtaagcctacagacagagtctagttgttaaaacatactctagaacacatt Alignment from Exonerate_coding2genome GGAAGAAGCAAGAAATAGAAGGTTTCATCTCATAGCTATGGATGCT gattttgttaactaggcactggcgcttagttccccctcatgcctatctagGGAAGAAATGAGAAACAGAAGGTTTCACCTCATAGCTATGGATGCTgtaagcctacagacagagtctagttgttaaaacatactctagaacacatt Alignment from GeneWise GGAAGAAGCAAGAAATAGAAGGTTTCATCTCATAGCTATGGATGCT gattttgttaactaggcactggcgcttagttccccctcatgcctatctagGGAAGAAATGAGAAACAGAAGGTTTCACCTCATAGCTATGGATGCTgtaagcctacagacagagtctagttgttaaaacatactctagaacacatt #### Frmd8_ID1286_2 --> 2 - 1 Original Alignment caGCCGATGTCCTGGTGTACCTGGCGGATGATACAGTAGTGCCCCTGGCCGTGGAGAATTTGTCCTCAATCAGTGCCCATGAGCTGCACCGCGCAGTCCGTGAAGTCCTGCAGCTCCCAGACGTGGCTTTGGAGGCCTTTGCACTCTGGCTCGTCTCCCCTCTCTTGg agtggttccattggccgtggataagctctgcttcctgtggcctttcctagcaGCTGATGTTTTGGTGTATCTGGCAGATGATACAGTGGTTCCATTGGCTGTGGATAATCTCTCTTCAATCAGTGCCCATGAGCTACATCGTGCAGTCCATGAAGTCCTTCAGCTTCCAGATGTGGCTCTGGAGGCCTTTGCACTCTGGCTAGTCCCTCCTCTCCTAggtaaagtacttcaccggggataagccctggcagagaggaggggtgtcatt Alignment from CESAR caGCCGATGTCCTGGTGTACCTGGCGGATGATACAGTAGTGCCCCTGGCCGTGGAGAATTTGTCCTCAATCAGTGCCCATGAGCTGCACCGCGCAGTCCGTGAAGTCCTGCAGCTCCCAGACGTGGCTTTGGAGGCCTTTGCACTCTGGCTCGTCTCCCCTCTCTTGg agtggttccattggccgtggataagctctgcttcctgtggcctttcctagcaGCTGATGTTTTGGTGTATCTGGCAGATGATACAGTGGTTCCATTGGCTGTGGATAATCTCTCTTCAATCAGTGCCCATGAGCTACATCGTGCAGTCCATGAAGTCCTTCAGCTTCCAGATGTGGCTCTGGAGGCCTTTGCACTCTGGCTAGTCCCTCCTCTCCTAggtaaagtacttcaccggggataagccctggcagagaggaggggtgtcatt Alignment from Spaln_aa2Genome CAGCCGATGTCCTGGTGTACCTGGCGGATGATACAGTAGTGCCCCTGGCCGTGGAGAATTTGTCCTCAATCAGTGCCCATGAGCTGCACCGCGCAGTCCGTGAAGTCCTGCAGCTCCCAGACGTGGCTTTGGAGGCCTTTGCACTCTGGCTCGTCTCCCCTCTCTTGG agtggttccattggccgtggataagctctgcttcctgtggcctttcctagCAGCTGATGTTTTGGTGTATCTGGCAGATGATACAGTGGTTCCATTGGCTGTGGATAATCTCTCTTCAATCAGTGCCCATGAGCTACATCGTGCAGTCCATGAAGTCCTTCAGCTTCCAGATGTGGCTCTGGAGGCCTTTGCACTCTGGCTAGTCCCTCCTCTCCTAGgtaaagtacttcaccggggataagccctggcagagaggaggggtgtcatt Alignment from Spaln_nt2Genome CAGCCGATGTCCTGGTGTACCTGGCGGATGATACAGTAGTGCCCCTGGCCGTGGAGAATTTGTCCTCAATCAGTGCCCATGAGCTGCACCGCGCAGTCCGTGAAGTCCTGCAGCTCCCAGACGTGGCTTTGGAGGCCTTTGCACTCTGGCTCGTCTCCCCTCTCTTGG agtggttccattggccgtggataagctctgcttcctgtggcctttcctagCAGCTGATGTTTTGGTGTATCTGGCAGATGATACAGTGGTTCCATTGGCTGTGGATAATCTCTCTTCAATCAGTGCCCATGAGCTACATCGTGCAGTCCATGAAGTCCTTCAGCTTCCAGATGTGGCTCTGGAGGCCTTTGCACTCTGGCTAGTCCCTCCTCTCCTAGgtaaagtacttcaccggggataagccctggcagagaggaggggtgtcatt Alignment from Pairagon CAGCCGATGTCCTGGTGTACCTGGCGGATGATACAGTAGTGCCCCTGGCCGTGGAGAATTTGTCCTCAATCAGTGCCCATGAGCTGCACCGCGCAGTCCGTGAAGTCCTGCAGCTCCCAGACGTGGCTTTGGAGGCCTTTGCACTCTGGCTCGTCTCCCCTCTCTTGG agtggttccattggccgtggataagctctgcttcctgtggcctttcctagCAGCTGATGTTTTGGTGTATCTGGCAGATGATACAGTGGTTCCATTGGCTGTGGATAATCTCTCTTCAATCAGTGCCCATGAGCTACATCGTGCAGTCCATGAAGTCCTTCAGCTTCCAGATGTGGCTCTGGAGGCCTTTGCACTCTGGCTAGTCCCTCCTCTCCTAGgtaaagtacttcaccggggataagccctggcagagaggaggggtgtcatt Alignment from Exonerate_protein2genome CAGCCGATGTCCTGGTGTACCTGGCGGATGATACAGTAGTGCCCCTGGCCGTGGAGAATTTGTCCTCAATCAGTGCCCATGAGCTGCACCGCGCAGTCCGTGAAGTCCTGCAGCTCCCAGACGTGGCTTTGGAGGCCTTTGCACTCTGGCTCGTCTCCCCTCTCTTGG agtggttccattggccgtggataagctctgcttcctgtggcctttcctagCAGCTGATGTTTTGGTGTATCTGGCAGATGATACAGTGGTTCCATTGGCTGTGGATAATCTCTCTTCAATCAGTGCCCATGAGCTACATCGTGCAGTCCATGAAGTCCTTCAGCTTCCAGATGTGGCTCTGGAGGCCTTTGCACTCTGGCTAGTCCCTCCTCTCCTAGgtaaagtacttcaccggggataagccctggcagagaggaggggtgtcatt Alignment from Exonerate_coding2genome CAGCCGATGTCCTGGTGTACCTGGCGGATGATACAGTAGTGCCCCTGGCCGTGGAGAATTTGTCCTCAATCAGTGCCCATGAGCTGCACCGCGCAGTCCGTGAAGTCCTGCAGCTCCCAGACGTGGCTTTGGAGGCCTTTGCACTCTGGCTCGTCTCCCCTCTCTTGG agtggttccattggccgtggataagctctgcttcctgtggcctttcctagCAGCTGATGTTTTGGTGTATCTGGCAGATGATACAGTGGTTCCATTGGCTGTGGATAATCTCTCTTCAATCAGTGCCCATGAGCTACATCGTGCAGTCCATGAAGTCCTTCAGCTTCCAGATGTGGCTCTGGAGGCCTTTGCACTCTGGCTAGTCCCTCCTCTCCTAGgtaaagtacttcaccggggataagccctggcagagaggaggggtgtcatt Alignment from GeneWise CAGCCGATGTCCTGGTGTACCTGGCGGATGATACAGTAGTGCCCCTGGCCGTGGAGAATTTGTCCTCAATCAGTGCCCATGAGCTGCACCGCGCAGTCCGTGAAGTCCTGCAGCTCCCAGACGTGGCTTTGGAGGCCTTTGCACTCTGGCTCGTCTCCCCTCTCTTGG agtggttccattggccgtggataagctctgcttcctgtggcctttcctagCAGCTGATGTTTTGGTGTATCTGGCAGATGATACAGTGGTTCCATTGGCTGTGGATAATCTCTCTTCAATCAGTGCCCATGAGCTACATCGTGCAGTCCATGAAGTCCTTCAGCTTCCAGATGTGGCTCTGGAGGCCTTTGCACTCTGGCTAGTCCCTCCTCTCCTAGgtaaagtacttcaccggggataagccctggcagagaggaggggtgtcatt #### Fth1_ID2624_3 --> 0 - 0 Original Alignment AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tatgttgagggtttaatgattaggatgagtgctctgttgctctcttccagAAACCCGACCGTGAAGATTGGGAGAGTGGGCTAAATGGAATAGAATGTGCACTACACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGCTGCACGAACTGGCAACTGATAAGAATGACCCCCATgtgagttccagttggctggagtagatggcttgctattgcttggagaaaat Alignment from CESAR AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tatgttgagggtttaatgattaggatgagtgctctgttgctctcttccagAAACCCGACCGTGAAGATTGGGAGAGTGGGCTAAATGGAATAGAATGTGCACTACACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGCTGCACGAACTGGCAACTGATAAGAATGACCCCCATgtgagttccagttggctggagtagatggcttgctattgcttggagaaaat Alignment from Spaln_aa2Genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tatgttgagggtttaatgattaggatgagtgctctgttgctctcttccagAAACCCGACCGTGAAGATTGGGAGAGTGGGCTAAATGGAATAGAATGTGCACTACACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGCTGCACGAACTGGCAACTGATAAGAATGACCCCCATgtgagttccagttggctggagtagatggcttgctattgcttggagaaaat Alignment from Spaln_nt2Genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tatgttgagggtttaatgattaggatgagtgctctgttgctctcttccagAAACCCGACCGTGAAGATTGGGAGAGTGGGCTAAATGGAATAGAATGTGCACTACACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGCTGCACGAACTGGCAACTGATAAGAATGACCCCCATgtgagttccagttggctggagtagatggcttgctattgcttggagaaaat Alignment from Pairagon AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tatgttgagggtttaatgattaggatgagtgctctgttgctctcttccagAAACCCGACCGTGAAGATTGGGAGAGTGGGCTAAATGGAATAGAATGTGCACTACACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGCTGCACGAACTGGCAACTGATAAGAATGACCCCCATgtgagttccagttggctggagtagatggcttgctattgcttggagaaaat Alignment from Exonerate_protein2genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tatgttgagggtttaatgattaggatgagtgctctgttgctctcttccagAAACCCGACCGTGAAGATTGGGAGAGTGGGCTAAATGGAATAGAATGTGCACTACACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGCTGCACGAACTGGCAACTGATAAGAATGACCCCCATgtgagttccagttggctggagtagatggcttgctattgcttggagaaaat Alignment from Exonerate_coding2genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tatgttgagggtttaatgattaggatgagtgctctgttgctctcttccagAAACCCGACCGTGAAGATTGGGAGAGTGGGCTAAATGGAATAGAATGTGCACTACACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGCTGCACGAACTGGCAACTGATAAGAATGACCCCCATgtgagttccagttggctggagtagatggcttgctattgcttggagaaaat Alignment from GeneWise AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tatgttgagggtttaatgattaggatgagtgctctgttgctctcttccagAAACCCGACCGTGAAGATTGGGAGAGTGGGCTAAATGGAATAGAATGTGCACTACACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGCTGCACGAACTGGCAACTGATAAGAATGACCCCCATgtgagttccagttggctggagtagatggcttgctattgcttggagaaaat #### Ganab_ID2466_5 --> 1 - 2 Original Alignment gCTTTCAGTCTCTGGCCGTGATGACAACAGTGTGGAGCTAACAGTGGCTGAGGGACCCTACAAAATCATTTTGACAGCACAGCCATTCCGCCTTGACCTGCTAGAAGATCGAAGCCTCCTGCTCAGTGTCAATGCCCGAGGACTTATGGCCTTTGAGCACCAGAGGGCCCCCAGGGTCcc ggaagattcaggaccatacatccagaaattctctgtttctcctcatacaggCTTTCAGTCTCCGGCCATGGTGATAAGACTGTTGAAATAACAGTTGCTGAGGGCCCCTATACAGTCATCTTGACTGCACAACCATTTCGTCTTGACCTGTTAGAGGATCAAACCCTACTGCTCAGTGTCAAGCCCCAAGGACTCATGGCTTTAGAACATCAGAGAGACCCTAGAGTGccgtaatggcagtaggaatgttttaagggaacttactgtaaatgttgcaaat Alignment from CESAR gCTTTCAGTCTCTGGCCGTGATGACAACAGTGTGGAGCTAACAGTGGCTGAGGGACCCTACAAAATCATTTTGACAGCACAGCCATTCCGCCTTGACCTGCTAGAAGATCGAAGCCTCCTGCTCAGTGTCAATGCCCGAGGACTTATGGCCTTTGAGCACCAGAGGGCCCCCAGGGTCcc ggaagattcaggaccatacatccagaaattctctgtttctcctcatacaggCTTTCAGTCTCCGGCCATGGTGATAAGACTGTTGAAATAACAGTTGCTGAGGGCCCCTATACAGTCATCTTGACTGCACAACCATTTCGTCTTGACCTGTTAGAGGATCAAACCCTACTGCTCAGTGTCAAGCCCCAAGGACTCATGGCTTTAGAACATCAGAGAGACCCTAGAGTGccgtaatggcagtaggaatgttttaagggaacttactgtaaatgttgcaaat Alignment from Spaln_aa2Genome GCTTTCAGTCTCTGGCCGTGATGACAACAGTGTGGAGCTAACAGTGGCTGAGGGACCCTACAAAATCATTTTGACAGCACAGCCATTCCGCCTTGACCTGCTAGAAGATCGAAGCCTCCTGCTCAGTGTCAATGCCCGAGGACTTATGGCCTTTGAGCACCAGAGGGCCCCCAGGGTCCC ggaagattcaggaccatacatccagaaattctctgtttctcctcatacagGCTTTCAGTCTCCGGCCATGGTGATAAGACTGTTGAAATAACAGTTGCTGAGGGCCCCTATACAGTCATCTTGACTGCACAACCATTTCGTCTTGACCTGTTAGAGGATCAAACCCTACTGCTCAGTGTCAAGCCCCAAGGACTCATGGCTTTAGAACATCAGAGAGACCCTAGAGTGCCgtaatggcagtaggaatgttttaagggaacttactgtaaatgttgcaaat Alignment from Spaln_nt2Genome GCTTTCAGTCTCTGGCCGTGATGACAACAGTGTGGAGCTAACAGTGGCTGAGGGACCCTACAAAATCATTTTGACAGCACAGCCATTCCGCCTTGACCTGCTAGAAGATCGAAGCCTCCTGCTCAGTGTCAATGCCCGAGGACTTATGGCCTTTGAGCACCAGAGGGCCCCCAGGGTCCC ggaagattcaggaccatacatccagaaattctctgtttctcctcatacagGCTTTCAGTCTCCGGCCATGGTGATAAGACTGTTGAAATAACAGTTGCTGAGGGCCCCTATACAGTCATCTTGACTGCACAACCATTTCGTCTTGACCTGTTAGAGGATCAAACCCTACTGCTCAGTGTCAAGCCCCAAGGACTCATGGCTTTAGAACATCAGAGAGACCCTAGAGTGCCgtaatggcagtaggaatgttttaagggaacttactgtaaatgttgcaaat Alignment from Pairagon GCTTTCAGTCTCTGGCCGTGATGACAACAGTGTGGAGCTAACAGTGGCTGAGGGACCCTACAAAATCATTTTGACAGCACAGCCATTCCGCCTTGACCTGCTAGAAGATCGAAGCCTCCTGCTCAGTGTCAATGCCCGAGGACTTATGGCCTTTGAGCACCAGAGGGCCCCCAGGGTCCC ggaagattcaggaccatacatccagaaattctctgtttctcctcatacagGCTTTCAGTCTCCGGCCATGGTGATAAGACTGTTGAAATAACAGTTGCTGAGGGCCCCTATACAGTCATCTTGACTGCACAACCATTTCGTCTTGACCTGTTAGAGGATCAAACCCTACTGCTCAGTGTCAAGCCCCAAGGACTCATGGCTTTAGAACATCAGAGAGACCCTAGAGTGCCgtaatggcagtaggaatgttttaagggaacttactgtaaatgttgcaaat Alignment from Exonerate_protein2genome GCTTTCAGTCTCTGGCCGTGATGACAACAGTGTGGAGCTAACAGTGGCTGAGGGACCCTACAAAATCATTTTGACAGCACAGCCATTCCGCCTTGACCTGCTAGAAGATCGAAGCCTCCTGCTCAGTGTCAATGCCCGAGGACTTATGGCCTTTGAGCACCAGAGGGCCCCCAGGGTCCC ggaagattcaggaccatacatccagaaattctctgtttctcctcatacagGCTTTCAGTCTCCGGCCATGGTGATAAGACTGTTGAAATAACAGTTGCTGAGGGCCCCTATACAGTCATCTTGACTGCACAACCATTTCGTCTTGACCTGTTAGAGGATCAAACCCTACTGCTCAGTGTCAAGCCCCAAGGACTCATGGCTTTAGAACATCAGAGAGACCCTAGAGTGCCgtaatggcagtaggaatgttttaagggaacttactgtaaatgttgcaaat Alignment from Exonerate_coding2genome GCTTTCAGTCTCTGGCCGTGATGACAACAGTGTGGAGCTAACAGTGGCTGAGGGACCCTACAAAATCATTTTGACAGCACAGCCATTCCGCCTTGACCTGCTAGAAGATCGAAGCCTCCTGCTCAGTGTCAATGCCCGAGGACTTATGGCCTTTGAGCACCAGAGGGCCCCCAGGGTCCC ggaagattcaggaccatacatccagaaattctctgtttctcctcatacagGCTTTCAGTCTCCGGCCATGGTGATAAGACTGTTGAAATAACAGTTGCTGAGGGCCCCTATACAGTCATCTTGACTGCACAACCATTTCGTCTTGACCTGTTAGAGGATCAAACCCTACTGCTCAGTGTCAAGCCCCAAGGACTCATGGCTTTAGAACATCAGAGAGACCCTAGAGTGCCgtaatggcagtaggaatgttttaagggaacttactgtaaatgttgcaaat Alignment from GeneWise GCTTTCAGTCTCTGGCCGTGATGACAACAGTGTGGAGCTAACAGTGGCTGAGGGACCCTACAAAATCATTTTGACAGCACAGCCATTCCGCCTTGACCTGCTAGAAGATCGAAGCCTCCTGCTCAGTGTCAATGCCCGAGGACTTATGGCCTTTGAGCACCAGAGGGCCCCCAGGGTCCC ggaagattcaggaccatacatccagaaattctctgtttctcctcatacagGCTTTCAGTCTCCGGCCATGGTGATAAGACTGTTGAAATAACAGTTGCTGAGGGCCCCTATACAGTCATCTTGACTGCACAACCATTTCGTCTTGACCTGTTAGAGGATCAAACCCTACTGCTCAGTGTCAAGCCCCAAGGACTCATGGCTTTAGAACATCAGAGAGACCCTAGAGTGCCgtaatggcagtaggaatgttttaagggaacttactgtaaatgttgcaaat #### Ganab_ID2467_6 --> 1 - 2 Original Alignment tTTCTCGGATAAAGTTAGTCTCGCGCTCGGTAGCGTGTGGGATAAGATCAAGAACCTTTTCTCTag ttttgctatcatcaccccggtttctgttttacacgtccttccccggttagtTTCTCAGATAAAGTTAGCCTGACACTCGGCAGTGTGTGGGATAAGATCAAGAACCTTTTTTCCaggtatccgcctcattatatacctgttgctgttctgcactggccactggccc Alignment from CESAR tTTCTCGGATAAAGTTAGTCTCGCGCTCGGTAGCGTGTGGGATAAGATCAAGAACCTTTTCTCTag ttttgctatcatcaccccggtttctgttttacacgtccttccccggttagtTTCTCAGATAAAGTTAGCCTGACACTCGGCAGTGTGTGGGATAAGATCAAGAACCTTTTTTCCaggtatccgcctcattatatacctgttgctgttctgcactggccactggccc Alignment from Spaln_aa2Genome TTTCTCGGATAAAGTTAGTCTCGCGCTCGGTAGCGTGTGGGATAAGATCAAGAACCTTTTCTCTAG ttttgctatcatcaccccggtttctgttttacacgtccttccccggttagTTTCTCAGATAAAGTTAGCCTGACACTCGGCAGTGTGTGGGATAAGATCAAGAACCTTTTTTCCAGgtatccgcctcattatatacctgttgctgttctgcactggccactggccc Alignment from Spaln_nt2Genome TTTCTCGGATAAAGTTAGTCTCGCGCTCGGTAGCGTGTGGGATAAGATCAAGAACCTTTTCTCTAG ttttgctatcatcaccccggtttctgttttacacgtccttccccggttagTTTCTCAGATAAAGTTAGCCTGACACTCGGCAGTGTGTGGGATAAGATCAAGAACCTTTTTTCCAGgtatccgcctcattatatacctgttgctgttctgcactggccactggccc Alignment from Pairagon TTTCTCGGATAAAGTTAGTCTCGCGCTCGGTAGCGTGTGGGATAAGATCAAGAACCTTTTCTCTAG ttttgctatcatcaccccggtttctgttttacacgtccttccccggttagTTTCTCAGATAAAGTTAGCCTGACACTCGGCAGTGTGTGGGATAAGATCAAGAACCTTTTTTCCAGgtatccgcctcattatatacctgttgctgttctgcactggccactggccc Alignment from Exonerate_protein2genome TTTCTCGGATAAAGTTAGTCTCGCGCTCGGTAGCGTGTGGGATAAGATCAAGAACCTTTTCTCTAG ttttgctatcatcaccccggtttctgttttacacgtccttccccggttagTTTCTCAGATAAAGTTAGCCTGACACTCGGCAGTGTGTGGGATAAGATCAAGAACCTTTTTTCCAGgtatccgcctcattatatacctgttgctgttctgcactggccactggccc Alignment from Exonerate_coding2genome TTTCTCGGATAAAGTTAGTCTCGCGCTCGGTAGCGTGTGGGATAAGATCAAGAACCTTTTCTCTAG ttttgctatcatcaccccggtttctgttttacacgtccttccccggttagTTTCTCAGATAAAGTTAGCCTGACACTCGGCAGTGTGTGGGATAAGATCAAGAACCTTTTTTCCAGgtatccgcctcattatatacctgttgctgttctgcactggccactggccc Alignment from GeneWise TTTCTCGGATAAAGTTAGTCTCGCGCTCGGTAGCGTGTGGGATAAGATCAAGAACCTTTTCTCTAG ttttgctatcatcaccccggtttctgttttacacgtccttccccggttagTTTCTCAGATAAAGTTAGCCTGACACTCGGCAGTGTGTGGGATAAGATCAAGAACCTTTTTTCCAGgtatccgcctcattatatacctgttgctgttctgcactggccactggccc #### Ganab_ID2469_8 --> 0 - 1 Original Alignment CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATg ggagtggagggtgcaagtgggtatgaatctacccaccttttcttcggcagCCAGAGGAGACCCAAGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATggtgagcaattggcaagtcttaatagtaaaagacctggccttctcttgcag Alignment from CESAR CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATg ggagtggagggtgcaagtgggtatgaatctacccaccttttcttcggcagCCAGAGGAGACCCAAGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATggtgagcaattggcaagtcttaatagtaaaagccttaacctgttttgaaag Alignment from Spaln_aa2Genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG ggagtggagggtgcaagtgggtatgaatctacccaccttttcttcggcagCCAGAGGAGACCCAAGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtgagcaattggcaagtcttaatagtaaaagacctggccttctcttgcag Alignment from Spaln_nt2Genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG ggagtggagggtgcaagtgggtatgaatctacccaccttttcttcggcagCCAGAGGAGACCCAAGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtgagcaattggcaagtcttaatagtaaaagacctggccttctcttgcag Alignment from Pairagon CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG ggagtggagggtgcaagtgggtatgaatctacccaccttttcttcggcagCCAGAGGAGACCCAAGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtgagcaattggcaagtcttaatagtaaaagacctggccttctcttgcag Alignment from Exonerate_protein2genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG ggagtggagggtgcaagtgggtatgaatctacccaccttttcttcggcagCCAGAGGAGACCCAAGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtgagcaattggcaagtcttaatagtaaaagacctggccttctcttgcag Alignment from Exonerate_coding2genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG ggagtggagggtgcaagtgggtatgaatctacccaccttttcttcggcagCCAGAGGAGACCCAAGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtgagcaattggcaagtcttaatagtaaaagacctggccttctcttgcag Alignment from GeneWise CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG ggagtggagggtgcaagtgggtatgaatctacccaccttttcttcggcagCCAGAGGAGACCCAAGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtgagcaattggcaagtcttaatagtaaaagacctggccttctcttgcag #### Ganab_ID2479_18 --> 2 - 2 Original Alignment cgGATGTGGGTGGCTTCTTCAAGAACCCAGAGCCAGAGCTGCTTGTGCGCTGGTACCAAATGGGTGCCTACCAGCCGTTCTTTCGGGCTCATGCCCACTTGGACACTGGGCGGCGAGAGCCATGGCTGTTAGCGTCTCAATACCAAGATGCAATCCGAGATGCCTTGTTCCAGCGATATTCTTTGCTGCCCTTCTGGTATACCCTCTTCTATCAAGCTCACAAGGAAGGGTTTCCTGTCATGag accagtactatggctactttaaatagacctccattccctgactgccacagcaGATGTAGGTGGGTCCTTTAGGAACCCAGAGCCGGAGTTACTTGTGCACTGGTACCAAATGGGTGCCTACCAGCCATTTTTTCGCGCTCATGCCCACTTGGACACTGGGCGACGAGAGCCATGGCTGTTAGCATCTCAGTACCAAGATGCAATCCGAGATGCCTTGTTCCAGCGGTATTCTTTACTGCCCTTCTGGTACACCCTATTCTATCAAGCTCACAAGGAAGGGTTTCCTGTCATGaggtaggatattactcaatgtgttgatgtagtgctgagtagatggaggactc Alignment from CESAR cgGATGTGGGTGGCTTCTTCAAGAACCCAGAGCCAGAGCTGCTTGTGCGCTGGTACCAAATGGGTGCCTACCAGCCGTTCTTTCGGGCTCATGCCCACTTGGACACTGGGCGGCGAGAGCCATGGCTGTTAGCGTCTCAATACCAAGATGCAATCCGAGATGCCTTGTTCCAGCGATATTCTTTGCTGCCCTTCTGGTATACCCTCTTCTATCAAGCTCACAAGGAAGGGTTTCCTGTCATGag accagtactatggctactttaaatagacctccattccctgactgccacagcaGATGTAGGTGGGTCCTTTAGGAACCCAGAGCCGGAGTTACTTGTGCACTGGTACCAAATGGGTGCCTACCAGCCATTTTTTCGCGCTCATGCCCACTTGGACACTGGGCGACGAGAGCCATGGCTGTTAGCATCTCAGTACCAAGATGCAATCCGAGATGCCTTGTTCCAGCGGTATTCTTTACTGCCCTTCTGGTACACCCTATTCTATCAAGCTCACAAGGAAGGGTTTCCTGTCATGaggtaggatattactcaatgtgttgatgtagtgctgagtagatggaggactc Alignment from Spaln_aa2Genome CGGATGTGGGTGGCTTCTTCAAGAACCCAGAGCCAGAGCTGCTTGTGCGCTGGTACCAAATGGGTGCCTACCAGCCGTTCTTTCGGGCTCATGCCCACTTGGACACTGGGCGGCGAGAGCCATGGCTGTTAGCGTCTCAATACCAAGATGCAATCCGAGATGCCTTGTTCCAGCGATATTCTTTGCTGCCCTTCTGGTATACCCTCTTCTATCAAGCTCACAAGGAAGGGTTTCCTGTCATGAG accagtactatggctactttaaatagacctccattccctgactgccacagCAGATGTAGGTGGGTCCTTTAGGAACCCAGAGCCGGAGTTACTTGTGCACTGGTACCAAATGGGTGCCTACCAGCCATTTTTTCGCGCTCATGCCCACTTGGACACTGGGCGACGAGAGCCATGGCTGTTAGCATCTCAGTACCAAGATGCAATCCGAGATGCCTTGTTCCAGCGGTATTCTTTACTGCCCTTCTGGTACACCCTATTCTATCAAGCTCACAAGGAAGGGTTTCCTGTCATGAGgtaggatattactcaatgtgttgatgtagtgctgagtagatggaggactc Alignment from Spaln_nt2Genome CGGATGTGGGTGGCTTCTTCAAGAACCCAGAGCCAGAGCTGCTTGTGCGCTGGTACCAAATGGGTGCCTACCAGCCGTTCTTTCGGGCTCATGCCCACTTGGACACTGGGCGGCGAGAGCCATGGCTGTTAGCGTCTCAATACCAAGATGCAATCCGAGATGCCTTGTTCCAGCGATATTCTTTGCTGCCCTTCTGGTATACCCTCTTCTATCAAGCTCACAAGGAAGGGTTTCCTGTCATGAG accagtactatggctactttaaatagacctccattccctgactgccacagCAGATGTAGGTGGGTCCTTTAGGAACCCAGAGCCGGAGTTACTTGTGCACTGGTACCAAATGGGTGCCTACCAGCCATTTTTTCGCGCTCATGCCCACTTGGACACTGGGCGACGAGAGCCATGGCTGTTAGCATCTCAGTACCAAGATGCAATCCGAGATGCCTTGTTCCAGCGGTATTCTTTACTGCCCTTCTGGTACACCCTATTCTATCAAGCTCACAAGGAAGGGTTTCCTGTCATGAGgtaggatattactcaatgtgttgatgtagtgctgagtagatggaggactc Alignment from Pairagon CGGATGTGGGTGGCTTCTTCAAGAACCCAGAGCCAGAGCTGCTTGTGCGCTGGTACCAAATGGGTGCCTACCAGCCGTTCTTTCGGGCTCATGCCCACTTGGACACTGGGCGGCGAGAGCCATGGCTGTTAGCGTCTCAATACCAAGATGCAATCCGAGATGCCTTGTTCCAGCGATATTCTTTGCTGCCCTTCTGGTATACCCTCTTCTATCAAGCTCACAAGGAAGGGTTTCCTGTCATGAG accagtactatggctactttaaatagacctccattccctgactgccacagCAGATGTAGGTGGGTCCTTTAGGAACCCAGAGCCGGAGTTACTTGTGCACTGGTACCAAATGGGTGCCTACCAGCCATTTTTTCGCGCTCATGCCCACTTGGACACTGGGCGACGAGAGCCATGGCTGTTAGCATCTCAGTACCAAGATGCAATCCGAGATGCCTTGTTCCAGCGGTATTCTTTACTGCCCTTCTGGTACACCCTATTCTATCAAGCTCACAAGGAAGGGTTTCCTGTCATGAGgtaggatattactcaatgtgttgatgtagtgctgagtagatggaggactc Alignment from Exonerate_protein2genome CGGATGTGGGTGGCTTCTTCAAGAACCCAGAGCCAGAGCTGCTTGTGCGCTGGTACCAAATGGGTGCCTACCAGCCGTTCTTTCGGGCTCATGCCCACTTGGACACTGGGCGGCGAGAGCCATGGCTGTTAGCGTCTCAATACCAAGATGCAATCCGAGATGCCTTGTTCCAGCGATATTCTTTGCTGCCCTTCTGGTATACCCTCTTCTATCAAGCTCACAAGGAAGGGTTTCCTGTCATGAG accagtactatggctactttaaatagacctccattccctgactgccacagCAGATGTAGGTGGGTCCTTTAGGAACCCAGAGCCGGAGTTACTTGTGCACTGGTACCAAATGGGTGCCTACCAGCCATTTTTTCGCGCTCATGCCCACTTGGACACTGGGCGACGAGAGCCATGGCTGTTAGCATCTCAGTACCAAGATGCAATCCGAGATGCCTTGTTCCAGCGGTATTCTTTACTGCCCTTCTGGTACACCCTATTCTATCAAGCTCACAAGGAAGGGTTTCCTGTCATGAGgtaggatattactcaatgtgttgatgtagtgctgagtagatggaggactc Alignment from Exonerate_coding2genome CGGATGTGGGTGGCTTCTTCAAGAACCCAGAGCCAGAGCTGCTTGTGCGCTGGTACCAAATGGGTGCCTACCAGCCGTTCTTTCGGGCTCATGCCCACTTGGACACTGGGCGGCGAGAGCCATGGCTGTTAGCGTCTCAATACCAAGATGCAATCCGAGATGCCTTGTTCCAGCGATATTCTTTGCTGCCCTTCTGGTATACCCTCTTCTATCAAGCTCACAAGGAAGGGTTTCCTGTCATGAG accagtactatggctactttaaatagacctccattccctgactgccacagCAGATGTAGGTGGGTCCTTTAGGAACCCAGAGCCGGAGTTACTTGTGCACTGGTACCAAATGGGTGCCTACCAGCCATTTTTTCGCGCTCATGCCCACTTGGACACTGGGCGACGAGAGCCATGGCTGTTAGCATCTCAGTACCAAGATGCAATCCGAGATGCCTTGTTCCAGCGGTATTCTTTACTGCCCTTCTGGTACACCCTATTCTATCAAGCTCACAAGGAAGGGTTTCCTGTCATGAGgtaggatattactcaatgtgttgatgtagtgctgagtagatggaggactc Alignment from GeneWise CGGATGTGGGTGGCTTCTTCAAGAACCCAGAGCCAGAGCTGCTTGTGCGCTGGTACCAAATGGGTGCCTACCAGCCGTTCTTTCGGGCTCATGCCCACTTGGACACTGGGCGGCGAGAGCCATGGCTGTTAGCGTCTCAATACCAAGATGCAATCCGAGATGCCTTGTTCCAGCGATATTCTTTGCTGCCCTTCTGGTATACCCTCTTCTATCAAGCTCACAAGGAAGGGTTTCCTGTCATGAG accagtactatggctactttaaatagacctccattccctgactgccacagCAGATGTAGGTGGGTCCTTTAGGAACCCAGAGCCGGAGTTACTTGTGCACTGGTACCAAATGGGTGCCTACCAGCCATTTTTTCGCGCTCATGCCCACTTGGACACTGGGCGACGAGAGCCATGGCTGTTAGCATCTCAGTACCAAGATGCAATCCGAGATGCCTTGTTCCAGCGGTATTCTTTACTGCCCTTCTGGTACACCCTATTCTATCAAGCTCACAAGGAAGGGTTTCCTGTCATGAGgtaggatattactcaatgtgttgatgtagtgctgagtagatggaggactc #### Gbf1_ID9758_2 --> 0 - 1 Original Alignment GATGAAGAACGGGATCCCCTTCTGCACAGTTTCAGTAACCTGAAAGAGGTCTTAAACAGTGTGACAg ctagcagtgtaatgaagtagcagttttttgaatcaggctttctttctcagGATGAAGAACGGGATCCCCTTCTGCACAGCTTCAGCAACCTGAAAGAGGTCTTAAACAGTGTGACAggtaagtcctgtgggaagtgtaacaagagggatgcctgaactcagtggtaa Alignment from CESAR GATGAAGAACGGGATCCCCTTCTGCACAGTTTCAGTAACCTGAAAGAGGTCTTAAACAGTGTGACAg ctagcagtgtaatgaagtagcagttttttgaatcaggctttctttctcagGATGAAGAACGGGATCCCCTTCTGCACAGCTTCAGCAACCTGAAAGAGGTCTTAAACAGTGTGACAggtaagtcctgtgggaagtgtaacaagagggatgcctgaactcagtggtaa Alignment from Spaln_aa2Genome GATGAAGAACGGGATCCCCTTCTGCACAGTTTCAGTAACCTGAAAGAGGTCTTAAACAGTGTGACAG ctagcagtgtaatgaagtagcagttttttgaatcaggctttctttctcagGATGAAGAACGGGATCCCCTTCTGCACAGCTTCAGCAACCTGAAAGAGGTCTTAAACAGTGTGACAGgtaagtcctgtgggaagtgtaacaagagggatgcctgaactcagtggtaa Alignment from Spaln_nt2Genome GATGAAGAACGGGATCCCCTTCTGCACAGTTTCAGTAACCTGAAAGAGGTCTTAAACAGTGTGACAG ctagcagtgtaatgaagtagcagttttttgaatcaggctttctttctcagGATGAAGAACGGGATCCCCTTCTGCACAGCTTCAGCAACCTGAAAGAGGTCTTAAACAGTGTGACAGgtaagtcctgtgggaagtgtaacaagagggatgcctgaactcagtggtaa Alignment from Pairagon GATGAAGAACGGGATCCCCTTCTGCACAGTTTCAGTAACCTGAAAGAGGTCTTAAACAGTGTGACAG ctagcagtgtaatgaagtagcagttttttgaatcaggctttctttctcagGATGAAGAACGGGATCCCCTTCTGCACAGCTTCAGCAACCTGAAAGAGGTCTTAAACAGTGTGACAGgtaagtcctgtgggaagtgtaacaagagggatgcctgaactcagtggtaa Alignment from Exonerate_protein2genome GATGAAGAACGGGATCCCCTTCTGCACAGTTTCAGTAACCTGAAAGAGGTCTTAAACAGTGTGACAG ctagcagtgtaatgaagtagcagttttttgaatcaggctttctttctcagGATGAAGAACGGGATCCCCTTCTGCACAGCTTCAGCAACCTGAAAGAGGTCTTAAACAGTGTGACAGgtaagtcctgtgggaagtgtaacaagagggatgcctgaactcagtggtaa Alignment from Exonerate_coding2genome GATGAAGAACGGGATCCCCTTCTGCACAGTTTCAGTAACCTGAAAGAGGTCTTAAACAGTGTGACAG ctagcagtgtaatgaagtagcagttttttgaatcaggctttctttctcagGATGAAGAACGGGATCCCCTTCTGCACAGCTTCAGCAACCTGAAAGAGGTCTTAAACAGTGTGACAGgtaagtcctgtgggaagtgtaacaagagggatgcctgaactcagtggtaa Alignment from GeneWise GATGAAGAACGGGATCCCCTTCTGCACAGTTTCAGTAACCTGAAAGAGGTCTTAAACAGTGTGACAG ctagcagtgtaatgaagtagcagttttttgaatcaggctttctttctcagGATGAAGAACGGGATCCCCTTCTGCACAGCTTCAGCAACCTGAAAGAGGTCTTAAACAGTGTGACAGgtaagtcctgtgggaagtgtaacaagagggatgcctgaactcagtggtaa #### Gbf1_ID9778_3 --> 2 - 1 Original Alignment aaCTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCGCTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAg aaaaggattccctatttaataaatgatgttctctccccttttccccccagaaCTCTCCGAGATTGAGCCAAATGTATTCCTTCGTCCCTTTCTGGAAGTAATACATTCTGAAGACACCACTGGACCTATAACTGGGTTGGCACTTACCACTGCCAACAGGTTCCTCTCTTACACACTCATAggtaagtgcttgggttttgatagctttgccaccaaacccccacatagccat Alignment from CESAR aaCTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCGCTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAg aaaaggattccctatttaataaatgatgttctctccccttttccccccagaaCTCTCCGAGATTGAGCCAAATGTATTCCTTCGTCCCTTTCTGGAAGTAATACATTCTGAAGACACCACTGGACCTATAACTGGGTTGGCACTTACCACTGCCAACAGGTTCCTCTCTTACACACTCATAggtaagtgcttgggttttgatagctttgccaccaaacccccacatagccat Alignment from Spaln_aa2Genome AACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCGCTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAG aaaaggattccctatttaataaatgatgttctctccccttttccccccagAACTCTCCGAGATTGAGCCAAATGTATTCCTTCGTCCCTTTCTGGAAGTAATACATTCTGAAGACACCACTGGACCTATAACTGGGTTGGCACTTACCACTGCCAACAGGTTCCTCTCTTACACACTCATAGgtaagtgcttgggttttgatagctttgccaccaaacccccacatagccat Alignment from Spaln_nt2Genome AACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCGCTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAG aaaaggattccctatttaataaatgatgttctctccccttttccccccagAACTCTCCGAGATTGAGCCAAATGTATTCCTTCGTCCCTTTCTGGAAGTAATACATTCTGAAGACACCACTGGACCTATAACTGGGTTGGCACTTACCACTGCCAACAGGTTCCTCTCTTACACACTCATAGgtaagtgcttgggttttgatagctttgccaccaaacccccacatagccat Alignment from Pairagon AACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCGCTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAG aaaaggattccctatttaataaatgatgttctctccccttttccccccagAACTCTCCGAGATTGAGCCAAATGTATTCCTTCGTCCCTTTCTGGAAGTAATACATTCTGAAGACACCACTGGACCTATAACTGGGTTGGCACTTACCACTGCCAACAGGTTCCTCTCTTACACACTCATAGgtaagtgcttgggttttgatagctttgccaccaaacccccacatagccat Alignment from Exonerate_protein2genome aaaaggattccctatttaataaatgatgttctctccccttttccccccagaactctccgagattgagccaaatgtattccttcgtccctttctggaagtaatacattctgaagacaccactggacctataactgggttggcacttaccactgccaacaggttcctctcttacacactcataggtaagtgcttgggttttgatagctttgccaccaaacccccacatagccat Alignment from Exonerate_coding2genome AACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCGCTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAG aaaaggattccctatttaataaatgatgttctctccccttttccccccagAACTCTCCGAGATTGAGCCAAATGTATTCCTTCGTCCCTTTCTGGAAGTAATACATTCTGAAGACACCACTGGACCTATAACTGGGTTGGCACTTACCACTGCCAACAGGTTCCTCTCTTACACACTCATAGgtaagtgcttgggttttgatagctttgccaccaaacccccacatagccat Alignment from GeneWise AACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCGCTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAG aaaaggattccctatttaataaatgatgttctctccccttttccccccagAACTCTCCGAGATTGAGCCAAATGTATTCCTTCGTCCCTTTCTGGAAGTAATACATTCTGAAGACACCACTGGACCTATAACTGGGTTGGCACTTACCACTGCCAACAGGTTCCTCTCTTACACACTCATAGgtaagtgcttgggttttgatagctttgccaccaaacccccacatagccat #### Gbf1_ID9781_4 --> 2 - 0 Original Alignment atCCAACTCATGAGGGCACAGCAGAGGGCATGGAGAACATGGCAGATGCTGTCACTCACGCCCGTTTTGTGGGCACAGATCCTGCCAGTGATGAAGTTGTCCTGATGAAAATCCTTCAG ctcccttctctcttttcatgaggacataagctttgttttctgtcgggcagatCCAACTCATGAAGGCACTGCAGAGGGCATGGAGAATATAGCAGATGCTGTAACTCATACCCGCTTTGTGGGCACTGATCCTGCAAGTGATGAAGTTGTCCTCATGAAAATCCTTAAAgcaaggcagaaaaagttagacaaaggatctgtgttatgaattctatattc Alignment from CESAR atCCAACTCATGAGGGCACAGCAGAGGGCATGGAGAACATGGCAGATGCTGTCACTCACGCCCGTTTTGTGGGCACAGATCCTGCCAGTGATGAAGTTGTCCTGATGAAAATCCTTCAG ctcccttctctcttttcatgaggacataagctttgttttctgtcgggcagatCCAACTCATGAAGGCACTGCAGAGGGCATGGAGAATATAGCAGATGCTGTAACTCATACCCGCTTTGTGGGCACTGATCCTGCAAGTGATGAAGTTGTCCTCATGAAAATCCTTAAAgcaaggcagaaaaagttagacaaaggatctgtgttatgaattctatattc Alignment from Spaln_aa2Genome ATCCAACTCATGAGGGCACAGCAGAGGGCATGGAGAACATGGCAGATGCTGTCACTCACGCCCGTTTTGTGGGCACAGATCCTGCCAGTGATGAAGTTGTCCTGATGAAAATCCTTCAG ctcccttctctcttttcatgaggacataagctttgttttctgtcgggcagATCCAACTCATGAAGGCACTGCAGAGGGCATGGAGAATATAGCAGATGCTGTAACTCATACCCGCTTTGTGGGCACTGATCCTGCAAGTGATGAAGTTGTCCTCATGAAAATCCTTAAAgcaaggcagaaaaagttagacaaaggatctgtgttatgaattctatattc Alignment from Spaln_nt2Genome ATCCAACTCATGAGGGCACAGCAGAGGGCATGGAGAACATGGCAGATGCTGTCACTCACGCCCGTTTTGTGGGCACAGATCCTGCCAGTGATGAAGTTGTCCTGATGAAAATCCTTCAG ctcccttctctcttttcatgaggacataagctttgttttctgtcgggcagATCCAACTCATGAAGGCACTGCAGAGGGCATGGAGAATATAGCAGATGCTGTAACTCATACCCGCTTTGTGGGCACTGATCCTGCAAGTGATGAAGTTGTCCTCATGAAAATCCTTAAAgcaaggcagaaaaagttagacaaaggatctgtgttatgaattctatattc Alignment from Pairagon ATCCAACTCATGAGGGCACAGCAGAGGGCATGGAGAACATGGCAGATGCTGTCACTCACGCCCGTTTTGTGGGCACAGATCCTGCCAGTGATGAAGTTGTCCTGATGAAAATCCTTCAG ctcccttctctcttttcatgaggacataagctttgttttctgtcgggcagATCCAACTCATGAAGGCACTGCAGAGGGCATGGAGAATATAGCAGATGCTGTAACTCATACCCGCTTTGTGGGCACTGATCCTGCAAGTGATGAAGTTGTCCTCATGAAAATCCTTAAAgcaaggcagaaaaagttagacaaaggatctgtgttatgaattctatattc Alignment from Exonerate_protein2genome ctcccttctctcttttcatgaggacataagctttgttttctgtcgggcagatccaactcatgaaggcactgcagagggcatggagaatatagcagatgctgtaactcatacccgctttgtgggcactgatcctgcaagtgatgaagttgtcctcatgaaaatccttaaagcaaggcagaaaaagttagacaaaggatctgtgttatgaattctatattc Alignment from Exonerate_coding2genome ATCCAACTCATGAGGGCACAGCAGAGGGCATGGAGAACATGGCAGATGCTGTCACTCACGCCCGTTTTGTGGGCACAGATCCTGCCAGTGATGAAGTTGTCCTGATGAAAATCCTTCAG ctcccttctctcttttcatgaggacataagctttgttttctgtcgggcagATCCAACTCATGAAGGCACTGCAGAGGGCATGGAGAATATAGCAGATGCTGTAACTCATACCCGCTTTGTGGGCACTGATCCTGCAAGTGATGAAGTTGTCCTCATGAAAATCCTTAAAgcaaggcagaaaaagttagacaaaggatctgtgttatgaattctatattc Alignment from GeneWise ATCCAACTCATGAGGGCACAGCAGAGGGCATGGAGAACATGGCAGATGCTGTCACTCACGCCCGTTTTGTGGGCACAGATCCTGCCAGTGATGAAGTTGTCCTGATGAAAATCCTTCAG------------------------------ ctcccttctctcttttcatgaggacataagctttgttttctgtcgggcagATCCAACTCATGAAGGCACTGCAGAGGGCATGGAGAATATAGCAGATGCTGTAACTCATACCCGCTTTGTGGGCACTGATCCTGCAAGTGATGAAGTTGTCCTCATGAAAATCCTTAAAGCAAGGCAGAAAAAGTTAGACAAAGGATCTgtgttatgaattctatattc #### Gbf1_ID9793_12 --> 0 - 0 Original Alignment CTACTCAGCGTAGAGCGCCTGAACCTTTATGCTGCTTCCCTACGAGTGTGCTTCTTACTCTTCGAGAGCATGCGGGAACACCTCAAGTTCCAGTTAGAG gttaatcctggtggctcataaatctagtatgttttctgttttgttttaagCTGCTCAGTTTTGAGCCCCTGAACCTATATGCTGCTTTTTTACGAGTGTGCTTTCTGTTGTTTGAGAGCATGAGGGAACACCTCAAGTTCCAATTAGAGgtaccgatcccaacttgggaagtaaaataatgggattaccctcagaacca Alignment from CESAR CTACTCAGCGTAGAGCGCCTGAACCTTTATGCTGCTTCCCTACGAGTGTGCTTCTTACTCTTCGAGAGCATGCGGGAACACCTCAAGTTCCAGTTAGAG gttaatcctggtggctcataaatctagtatgttttctgttttgttttaagCTGCTCAGTTTTGAGCCCCTGAACCTATATGCTGCTTTTTTACGAGTGTGCTTTCTGTTGTTTGAGAGCATGAGGGAACACCTCAAGTTCCAATTAGAGgtaccgatcccaacttgggaagtaaaataatgggattaccctcagaacca Alignment from Spaln_aa2Genome CTACTCAGCGTAGAGCGCCTGAACCTTTATGCTGCTTCCCTACGAGTGTGCTTCTTACTCTTCGAGAGCATGCGGGAACACCTCAAGTTCCAGTTAGAG gttaatcctggtggctcataaatctagtatgttttctgttttgttttaagCTGCTCAGTTTTGAGCCCCTGAACCTATATGCTGCTTTTTTACGAGTGTGCTTTCTGTTGTTTGAGAGCATGAGGGAACACCTCAAGTTCCAATTAGAGgtaccgatcccaacttgggaagtaaaataatgggattaccctcagaacca Alignment from Spaln_nt2Genome CTACTCAGCGTAGAGCGCCTGAACCTTTATGCTGCTTCCCTACGAGTGTGCTTCTTACTCTTCGAGAGCATGCGGGAACACCTCAAGTTCCAGTTAGAG gttaatcctggtggctcataaatctagtatgttttctgttttgttttaagCTGCTCAGTTTTGAGCCCCTGAACCTATATGCTGCTTTTTTACGAGTGTGCTTTCTGTTGTTTGAGAGCATGAGGGAACACCTCAAGTTCCAATTAGAGgtaccgatcccaacttgggaagtaaaataatgggattaccctcagaacca Alignment from Pairagon CTACTCAGCGTAGAGCGCCTGAACCTTTATGCTGCTTCCCTACGAGTGTGCTTCTTACTCTTCGAGAGCATGCGGGAACACCTCAAGTTCCAGTTAGAG gttaatcctggtggctcataaatctagtatgttttctgttttgttttaagCTGCTCAGTTTTGAGCCCCTGAACCTATATGCTGCTTTTTTACGAGTGTGCTTTCTGTTGTTTGAGAGCATGAGGGAACACCTCAAGTTCCAATTAGAGgtaccgatcccaacttgggaagtaaaataatgggattaccctcagaacca Alignment from Exonerate_protein2genome CTACTCAGCGTAGAGCGCCTGAACCTTTATGCTGCTTCCCTACGAGTGTGCTTCTTACTCTTCGAGAGCATGCGGGAACACCTCAAGTTCCAGTTAGAG gttaatcctggtggctcataaatctagtatgttttctgttttgttttaagCTGCTCAGTTTTGAGCCCCTGAACCTATATGCTGCTTTTTTACGAGTGTGCTTTCTGTTGTTTGAGAGCATGAGGGAACACCTCAAGTTCCAATTAGAGgtaccgatcccaacttgggaagtaaaataatgggattaccctcagaacca Alignment from Exonerate_coding2genome CTACTCAGCGTAGAGCGCCTGAACCTTTATGCTGCTTCCCTACGAGTGTGCTTCTTACTCTTCGAGAGCATGCGGGAACACCTCAAGTTCCAGTTAGAG gttaatcctggtggctcataaatctagtatgttttctgttttgttttaagCTGCTCAGTTTTGAGCCCCTGAACCTATATGCTGCTTTTTTACGAGTGTGCTTTCTGTTGTTTGAGAGCATGAGGGAACACCTCAAGTTCCAATTAGAGgtaccgatcccaacttgggaagtaaaataatgggattaccctcagaacca Alignment from GeneWise CTACTCAGCGTAGAGCGCCTGAACCTTTATGCTGCTTCCCTACGAGTGTGCTTCTTACTCTTCGAGAGCATGCGGGAACACCTCAAGTTCCAGTTAGAG gttaatcctggtggctcataaatctagtatgttttctgttttgttttaagCTGCTCAGTTTTGAGCCCCTGAACCTATATGCTGCTTTTTTACGAGTGTGCTTTCTGTTGTTTGAGAGCATGAGGGAACACCTCAAGTTCCAATTAGAGgtaccgatcccaacttgggaagtaaaataatgggattaccctcagaacca #### Gbf1_ID9795_14 --> 0 - 1 Original Alignment AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGt acagtataccactggctgggtcacatagcctgtgtctttcattttctaagAATGCATTTCCTGTATCTGGTCAGCTCGATACTACACATCTTCTGTCCCTTGATGCTCTTTTGACTTTTATTGACAGTACTGAGTTTCATTCTCAAGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACATCGAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGtgtatccaacctaattatgttattattactattctttatgtccatgctctc Alignment from CESAR AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGt acagtataccactggctgggtcacatagcctgtgtctttcattttctaagAATGCATTTCCTGTATCTGGTCAGCTCGATACTACACATCTTCTGTCCCTTGATGCTCTTTTGACTTTTATTGACAGTACTGAGTTTCATTCTCAAGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACATCGAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGtgtatccaacctaattatgttattattactattctttatgtccatgctctc Alignment from Spaln_aa2Genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT acagtataccactggctgggtcacatagcctgtgtctttcattttctaagAATGCATTTCCTGTATCTGGTCAGCTCGATACTACACATCTTCTGTCCCTTGATGCTCTTTTGACTTTTATTGACAGTACTGAGTTTCATTCTCAAGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACATCGAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGTgtatccaacctaattatgttattattactattctttatgtccatgctctc Alignment from Spaln_nt2Genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT acagtataccactggctgggtcacatagcctgtgtctttcattttctaagAATGCATTTCCTGTATCTGGTCAGCTCGATACTACACATCTTCTGTCCCTTGATGCTCTTTTGACTTTTATTGACAGTACTGAGTTTCATTCTCAAGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACATCGAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGTgtatccaacctaattatgttattattactattctttatgtccatgctctc Alignment from Pairagon AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT acagtataccactggctgggtcacatagcctgtgtctttcattttctaagAATGCATTTCCTGTATCTGGTCAGCTCGATACTACACATCTTCTGTCCCTTGATGCTCTTTTGACTTTTATTGACAGTACTGAGTTTCATTCTCAAGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACATCGAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGTgtatccaacctaattatgttattattactattctttatgtccatgctctc Alignment from Exonerate_protein2genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT acagtataccactggctgggtcacatagcctgtgtctttcattttctaagAATGCATTTCCTGTATCTGGTCAGCTCGATACTACACATCTTCTGTCCCTTGATGCTCTTTTGACTTTTATTGACAGTACTGAGTTTCATTCTCAAGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACATCGAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGTgtatccaacctaattatgttattattactattctttatgtccatgctctc Alignment from Exonerate_coding2genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT acagtataccactggctgggtcacatagcctgtgtctttcattttctaagAATGCATTTCCTGTATCTGGTCAGCTCGATACTACACATCTTCTGTCCCTTGATGCTCTTTTGACTTTTATTGACAGTACTGAGTTTCATTCTCAAGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACATCGAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGTgtatccaacctaattatgttattattactattctttatgtccatgctctc Alignment from GeneWise --------------------------------------------TCCAAGAATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT ACAGTATACCACTGGCTGGGTCACATAGCCTGTGTCTTTCATTTTCTAAGAATGCATTTCCTGTATCTGGTCAGCTCGATACTACACATCTTCTGTCCCTTGATGCTCTTTTGACTTTTATTGACAGTACTGAGTTTCATTCTCAAGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACATCGAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGTgtatccaacctaattatgttattattactattctttatgtccatgctctc #### Gbf1_ID9803_22 --> 1 - 0 Original Alignment gAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG ggcctggtaaatgtgcaccaggtgtttctgtacttcctcttatttttcaggAAGTGTGCCACAATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTTTAAGTAGTGAGgtaagaaattaacaagtaaactagtcagaggccaatgctccacctcctcc Alignment from CESAR gAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG ggcctggtaaatgtgcaccaggtgtttctgtacttcctcttatttttcaggAAGTGTGCCACAATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTTTAAGTAGTGAGgtaagaaattaacaagtaaactagtcagaggccaatgctccacctcctcc Alignment from Spaln_aa2Genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG ggcctggtaaatgtgcaccaggtgtttctgtacttcctcttatttttcagGAAGTGTGCCACAATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTTTAAGTAGTGAGgtaagaaattaacaagtaaactagtcagaggccaatgctccacctcctcc Alignment from Spaln_nt2Genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG ggcctggtaaatgtgcaccaggtgtttctgtacttcctcttatttttcagGAAGTGTGCCACAATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTTTAAGTAGTGAGgtaagaaattaacaagtaaactagtcagaggccaatgctccacctcctcc Alignment from Pairagon GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG ggcctggtaaatgtgcaccaggtgtttctgtacttcctcttatttttcagGAAGTGTGCCACAATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTTTAAGTAGTGAGgtaagaaattaacaagtaaactagtcagaggccaatgctccacctcctcc Alignment from Exonerate_protein2genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG ggcctggtaaatgtgcaccaggtgtttctgtacttcctcttatttttcagGAAGTGTGCCACAATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTTTAAGTAGTGAGgtaagaaattaacaagtaaactagtcagaggccaatgctccacctcctcc Alignment from Exonerate_coding2genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG ggcctggtaaatgtgcaccaggtgtttctgtacttcctcttatttttcagGAAGTGTGCCACAATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTTTAAGTAGTGAGgtaagaaattaacaagtaaactagtcagaggccaatgctccacctcctcc Alignment from GeneWise GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG ggcctggtaaatgtgcaccaggtgtttctgtacttcctcttatttttcagGAAGTGTGCCACAATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTTTAAGTAGTGAGgtaagaaattaacaagtaaactagtcagaggccaatgctccacctcctcc #### Gbf1_ID9808_27 --> 0 - 2 Original Alignment GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACag gagggtgctggaatcccaactcctttctgtaattcttattttttaaccagGCTCTGGTCTCAGTAACCCCAGATGAAGAGACATATGATGAAGAAGATGCCGCTTTTTGTCTTGAAATGCTGCTAAGGATTGTTCTAGAGAACaggtaatgtaagttaagcctgtagaacccagaaggttctatactggcttacc Alignment from CESAR GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACag gagggtgctggaatcccaactcctttctgtaattcttattttttaaccagGCTCTGGTCTCAGTAACCCCAGATGAAGAGACATATGATGAAGAAGATGCCGCTTTTTGTCTTGAAATGCTGCTAAGGATTGTTCTAGAGAACaggtaatgtaagttaagcctgtagaacccagaaggttctatactggcttacc Alignment from Spaln_aa2Genome GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG gagggtgctggaatcccaactcctttctgtaattcttattttttaaccagGCTCTGGTCTCAGTAACCCCAGATGAAGAGACATATGATGAAGAAGATGCCGCTTTTTGTCTTGAAATGCTGCTAAGGATTGTTCTAGAGAACAGgtaatgtaagttaagcctgtagaacccagaaggttctatactggcttacc Alignment from Spaln_nt2Genome GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG gagggtgctggaatcccaactcctttctgtaattcttattttttaaccagGCTCTGGTCTCAGTAACCCCAGATGAAGAGACATATGATGAAGAAGATGCCGCTTTTTGTCTTGAAATGCTGCTAAGGATTGTTCTAGAGAACAGgtaatgtaagttaagcctgtagaacccagaaggttctatactggcttacc Alignment from Pairagon GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG gagggtgctggaatcccaactcctttctgtaattcttattttttaaccagGCTCTGGTCTCAGTAACCCCAGATGAAGAGACATATGATGAAGAAGATGCCGCTTTTTGTCTTGAAATGCTGCTAAGGATTGTTCTAGAGAACAGgtaatgtaagttaagcctgtagaacccagaaggttctatactggcttacc Alignment from Exonerate_protein2genome GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG gagggtgctggaatcccaactcctttctgtaattcttattttttaaccagGCTCTGGTCTCAGTAACCCCAGATGAAGAGACATATGATGAAGAAGATGCCGCTTTTTGTCTTGAAATGCTGCTAAGGATTGTTCTAGAGAACAGgtaatgtaagttaagcctgtagaacccagaaggttctatactggcttacc Alignment from Exonerate_coding2genome GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG gagggtgctggaatcccaactcctttctgtaattcttattttttaaccagGCTCTGGTCTCAGTAACCCCAGATGAAGAGACATATGATGAAGAAGATGCCGCTTTTTGTCTTGAAATGCTGCTAAGGATTGTTCTAGAGAACAGgtaatgtaagttaagcctgtagaacccagaaggttctatactggcttacc Alignment from GeneWise GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG gagggtgctggaatcccaactcctttctgtaattcttattttttaaccagGCTCTGGTCTCAGTAACCCCAGATGAAGAGACATATGATGAAGAAGATGCCGCTTTTTGTCTTGAAATGCTGCTAAGGATTGTTCTAGAGAACAGgtaatgtaagttaagcctgtagaacccagaaggttctatactggcttacc #### Gbf1_ID9809_28 --> 1 - 0 Original Alignment gGACCGTGTGGGCTGTGTATGGCAGACTGTTCGAGATCATCTATACCACCTGTGTGTTCAGGCACAAGATTTCTGCTTCCTTGTGGAGCGAGCAGTGGTAGGGCTGCTACGCCTAGCCATCCGGCTACTCCGGAGAGAAGAGATTAGTGGCCAG ttcagtggcctggtaacaagtttctcactgctcctttctcgttcctgcagaGATCATGTTGGGTGTGTGTGGCAGAGTGTTCGAGATCATCTATACCACTTGTGTGTCCAGGCCCAAGATTTCTGCTTCCTTGTGGGGCGAACTGTGGTGGGGTTGCTACGCCTGGCCCTTCATTTACTCCGGAGAGAAGAAATAGGTGGCCAGgtctgtaaatgctagtgaagggaagtgaacttagtatgcatactaggtaa Alignment from CESAR gGACCGTGTGGGCTGTGTATGGCAGACTGTTCGAGATCATCTATACCACCTGTGTGTTCAGGCACAAGATTTCTGCTTCCTTGTGGAGCGAGCAGTGGTAGGGCTGCTACGCCTAGCCATCCGGCTACTCCGGAGAGAAGAGATTAGTGGCCAG ttcagtggcctggtaacaagtttctcactgctcctttctcgttcctgcagaGATCATGTTGGGTGTGTGTGGCAGAGTGTTCGAGATCATCTATACCACTTGTGTGTCCAGGCCCAAGATTTCTGCTTCCTTGTGGGGCGAACTGTGGTGGGGTTGCTACGCCTGGCCCTTCATTTACTCCGGAGAGAAGAAATAGGTGGCCAGgtctgtaaatgctagtgaagggaagtgaacttagtatgcatactaggtaa Alignment from Spaln_aa2Genome GGACCGTGTGGGCTGTGTATGGCAGACTGTTCGAGATCATCTATACCACCTGTGTGTTCAGGCACAAGATTTCTGCTTCCTTGTGGAGCGAGCAGTGGTAGGGCTGCTACGCCTAGCCATCCGGCTACTCCGGAGAGAAGAGATTAGTGGCCAG ttcagtggcctggtaacaagtttctcactgctcctttctcgttcctgcagAGATCATGTTGGGTGTGTGTGGCAGAGTGTTCGAGATCATCTATACCACTTGTGTGTCCAGGCCCAAGATTTCTGCTTCCTTGTGGGGCGAACTGTGGTGGGGTTGCTACGCCTGGCCCTTCATTTACTCCGGAGAGAAGAAATAGGTGGCCAGgtctgtaaatgctagtgaagggaagtgaacttagtatgcatactaggtaa Alignment from Spaln_nt2Genome GGACCGTGTGGGCTGTGTATGGCAGACTGTTCGAGATCATCTATACCACCTGTGTGTTCAGGCACAAGATTTCTGCTTCCTTGTGGAGCGAGCAGTGGTAGGGCTGCTACGCCTAGCCATCCGGCTACTCCGGAGAGAAGAGATTAGTGGCCAG ttcagtggcctggtaacaagtttctcactgctcctttctcgttcctgcagAGATCATGTTGGGTGTGTGTGGCAGAGTGTTCGAGATCATCTATACCACTTGTGTGTCCAGGCCCAAGATTTCTGCTTCCTTGTGGGGCGAACTGTGGTGGGGTTGCTACGCCTGGCCCTTCATTTACTCCGGAGAGAAGAAATAGGTGGCCAGgtctgtaaatgctagtgaagggaagtgaacttagtatgcatactaggtaa Alignment from Pairagon GGACCGTGTGGGCTGTGTATGGCAGACTGTTCGAGATCATCTATACCACCTGTGTGTTCAGGCACAAGATTTCTGCTTCCTTGTGGAGCGAGCAGTGGTAGGGCTGCTACGCCTAGCCATCCGGCTACTCCGGAGAGAAGAGATTAGTGGCCAG ttcagtggcctggtaacaagtttctcactgctcctttctcgttcctgcagAGATCATGTTGGGTGTGTGTGGCAGAGTGTTCGAGATCATCTATACCACTTGTGTGTCCAGGCCCAAGATTTCTGCTTCCTTGTGGGGCGAACTGTGGTGGGGTTGCTACGCCTGGCCCTTCATTTACTCCGGAGAGAAGAAATAGGTGGCCAGgtctgtaaatgctagtgaagggaagtgaacttagtatgcatactaggtaa Alignment from Exonerate_protein2genome GGACCGTGTGGGCTGTGTATGGCAGACTGTTCGAGATCATCTATACCACCTGTGTGTTCAGGCACAAGATTTCTGCTTCCTTGTGGAGCGAGCAGTGGTAGGGCTGCTACGCCTAGCCATCCGGCTACTCCGGAGAGAAGAGATTAGTGGCCAG ttcagtggcctggtaacaagtttctcactgctcctttctcgttcctgcagAGATCATGTTGGGTGTGTGTGGCAGAGTGTTCGAGATCATCTATACCACTTGTGTGTCCAGGCCCAAGATTTCTGCTTCCTTGTGGGGCGAACTGTGGTGGGGTTGCTACGCCTGGCCCTTCATTTACTCCGGAGAGAAGAAATAGGTGGCCAGgtctgtaaatgctagtgaagggaagtgaacttagtatgcatactaggtaa Alignment from Exonerate_coding2genome GGACCGTGTGGGCTGTGTATGGCAGACTGTTCGAGATCATCTATACCACCTGTGTGTTCAGGCACAAGATTTCTGCTTCCTTGTGGAGCGAGCAGTGGTAGGGCTGCTACGCCTAGCCATCCGGCTACTCCGGAGAGAAGAGATTAGTGGCCAG ttcagtggcctggtaacaagtttctcactgctcctttctcgttcctgcagAGATCATGTTGGGTGTGTGTGGCAGAGTGTTCGAGATCATCTATACCACTTGTGTGTCCAGGCCCAAGATTTCTGCTTCCTTGTGGGGCGAACTGTGGTGGGGTTGCTACGCCTGGCCCTTCATTTACTCCGGAGAGAAGAAATAGGTGGCCAGgtctgtaaatgctagtgaagggaagtgaacttagtatgcatactaggtaa Alignment from GeneWise GGACCGTGTGGGCTGTGTATGGCAGACTGTTCGAGATCATCTATACCACCTGTGTGTTCAGGCACAAGATTTCTGCTTCCTTGTGGAGCGAGCAGTGGTAGGGCTGCTACGCCTAGCCATCCGGCTACTCCGGAGAGAAGAGATTAGTGGCCAG ttcagtggcctggtaacaagtttctcactgctcctttctcgttcctgcagAGATCATGTTGGGTGTGTGTGGCAGAGTGTTCGAGATCATCTATACCACTTGTGTGTCCAGGCCCAAGATTTCTGCTTCCTTGTGGGGCGAACTGTGGTGGGGTTGCTACGCCTGGCCCTTCATTTACTCCGGAGAGAAGAAATAGGTGGCCAGgtctgtaaatgctagtgaagggaagtgaacttagtatgcatactaggtaa #### Gbf1_ID9817_36 --> 0 - 0 Original Alignment GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG gtttttactgttgggtagtttgagctgtcacacccagtgtgtctctccagGTCTTCCTACAGCATCTGTCCCCATTGTTGTCGTTATCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCTGGTTCAAGTGATTTGCTTgtaagtttacctagataaaccatttctatccaggcatatcttcatgtact Alignment from CESAR GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG gtttttactgttgggtagtttgagctgtcacacccagtgtgtctctccagGTCTTCCTACAGCATCTGTCCCCATTGTTGTCGTTATCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCTGGTTCAAGTGATTTGCTTgtaagtttacctagataaaccatttctatccaggcatatcttcatgtact Alignment from Spaln_aa2Genome GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG gtttttactgttgggtagtttgagctgtcacacccagtgtgtctctccagGTCTTCCTACAGCATCTGTCCCCATTGTTGTCGTTATCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCTGGTTCAAGTGATTTGCTTgtaagtttacctagataaaccatttctatccaggcatatcttcatgtact Alignment from Spaln_nt2Genome GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG gtttttactgttgggtagtttgagctgtcacacccagtgtgtctctccagGTCTTCCTACAGCATCTGTCCCCATTGTTGTCGTTATCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCTGGTTCAAGTGATTTGCTTgtaagtttacctagataaaccatttctatccaggcatatcttcatgtact Alignment from Pairagon GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG gtttttactgttgggtagtttgagctgtcacacccagtgtgtctctccagGTCTTCCTACAGCATCTGTCCCCATTGTTGTCGTTATCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCTGGTTCAAGTGATTTGCTTgtaagtttacctagataaaccatttctatccaggcatatcttcatgtact Alignment from Exonerate_protein2genome GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG gtttttactgttgggtagtttgagctgtcacacccagtgtgtctctccagGTCTTCCTACAGCATCTGTCCCCATTGTTGTCGTTATCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCTGGTTCAAGTGATTTGCTTgtaagtttacctagataaaccatttctatccaggcatatcttcatgtact Alignment from Exonerate_coding2genome GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG gtttttactgttgggtagtttgagctgtcacacccagtgtgtctctccagGTCTTCCTACAGCATCTGTCCCCATTGTTGTCGTTATCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCTGGTTCAAGTGATTTGCTTgtaagtttacctagataaaccatttctatccaggcatatcttcatgtact Alignment from GeneWise GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG gtttttactgttgggtagtttgagctgtcacacccagtgtgtctctccagGTCTTCCTACAGCATCTGTCCCCATTGTTGTCGTTATCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCTGGTTCAAGTGATTTGCTTgtaagtttacctagataaaccatttctatccaggcatatcttcatgtact #### Gbf1_ID9819_38 --> 2 - 1 Original Alignment acCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTg cgtgttgcaactatgagactcatcctttgagctgcactgcttttatgtagacCCAATGCCTGCTGAAACACATAGTCAGGAGCCT---GCATCCACTCACCTTATGTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATGCACCCCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTggtgagttacacttagcccattacctgtgcaaaccactgctttcacaagaa Alignment from CESAR acCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTg cgtgttgcaactatgagactcatcctttgagctgcactgcttttatgtagacCCAATGCCTGCTGAAACACATAGTCAGGAGCCT---GCATCCACTCACCTTATGTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATGCACCCCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTggtgagttacacttagcccattacctgtgcaaaccactgctttcacaagaa Alignment from Spaln_aa2Genome ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG cgtgttgcaactatgagactcatcctttgagctgcactgcttttatgtagACCCAATGCCTGCTGAAACACATAGTCAGGAGCCT---GCATCCACTCACCTTATGTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATGCACCCCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTGgtgagttacacttagcccattacctgtgcaaaccactgctttcacaagaa Alignment from Spaln_nt2Genome ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG cgtgttgcaactatgagactcatcctttgagctgcactgcttttatgtagACCCAATGCCTGCTGAAACACATAGTCAGGAGCCT---GCATCCACTCACCTTATGTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATGCACCCCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTGgtgagttacacttagcccattacctgtgcaaaccactgctttcacaagaa Alignment from Pairagon ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG cgtgttgcaactatgagactcatcctttgagctgcactgcttttatgtagACCCAATGCCTGCTGAAACACATAGTCAGGAGCCT---GCATCCACTCACCTTATGTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATGCACCCCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTGgtgagttacacttagcccattacctgtgcaaaccactgctttcacaagaa Alignment from Exonerate_protein2genome ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG cgtgttgcaactatgagactcatcctttgagctgcactgcttttatgtagACCCAATGCCTGCTGAAACACATAGTCAGGAGCCT---GCATCCACTCACCTTATGTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATGCACCCCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTGgtgagttacacttagcccattacctgtgcaaaccactgctttcacaagaa Alignment from Exonerate_coding2genome ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG cgtgttgcaactatgagactcatcctttgagctgcactgcttttatgtagACCCAATGCCTGCTGAAACACATAGTCAGGAGCCT---GCATCCACTCACCTTATGTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATGCACCCCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTGgtgagttacacttagcccattacctgtgcaaaccactgctttcacaagaa Alignment from GeneWise ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG cgtgttgcaactatgagactcatcctttgagctgcactgcttttatgtagACCCAATGCCTGCTGAAACACATAGTCAGGAGCCT---GCATCCACTCACCTTATGTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATGCACCCCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTGgtgagttacacttagcccattacctgtgcaaaccactgctttcacaagaa #### Gda_ID4890_13 --> 0 - 1 Original Alignment GCTGTTATCCAGAAGTTTCTTTATCTAg aattcagggaacattgggaaatttctcaacgttccccctttattgtgcagGCTATTATTCAGAAGTTTCTTTATCTAggtacgtaaattagcttattaatggtattcccctctttattattccagggc Alignment from CESAR GCTGTTATCCAGAAGTTTCTTTATCTAg aattcagggaacattgggaaatttctcaacgttccccctttattgtgcagGCTATTATTCAGAAGTTTCTTTATCTAggtacgtaaattagcttattaatggtattcccctctttattattccagggc Alignment from Spaln_aa2Genome GCTGTTATCCAGAAGTTTCTTTATCTAG aattcagggaacattgggaaatttctcaacgttccccctttattgtgcagGCTATTATTCAGAAGTTTCTTTATCTAGgtacgtaaattagcttattaatggtattcccctctttattattccagggc Alignment from Spaln_nt2Genome GCTGTTATCCAGAAGTTTCTTTATCTAG aattcagggaacattgggaaatttctcaacgttccccctttattgtgcagGCTATTATTCAGAAGTTTCTTTATCTAGgtacgtaaattagcttattaatggtattcccctctttattattccagggc Alignment from Pairagon GCTGTTATCCAGAAGTTTCTTTATCTAG aattcagggaacattgggaaatttctcaacgttccccctttattgtgcagGCTATTATTCAGAAGTTTCTTTATCTAGgtacgtaaattagcttattaatggtattcccctctttattattccagggc Alignment from Exonerate_protein2genome aattcagggaacattgggaaatttctcaacgttccccctttattgtgcaggctattattcagaagtttctttatctaggtacgtaaattagcttattaatggtattcccctctttattattccagggc Alignment from Exonerate_coding2genome aattcagggaacattgggaaatttctcaacgttccccctttattgtgcaggctattattcagaagtttctttatctaggtacgtaaattagcttattaatggtattcccctctttattattccagggc Alignment from GeneWise aattcagggaacattgggaaatttctcaacgttccccctttattgtgcaggctattattcagaagtttctttatctaggtacgtaaattagcttattaatggtattcccctctttattattccagggc #### Gda_ID4894_10 --> 1 - 1 Original Alignment gCTGAGCAGTGGCTTACTGAACGTGCTTGAGGTCCTGAAGCATAAAGTGAAGATAGGGCTGGGGACAg gctgagcagtcagctagatctgggtgaatgctctggtttctcccatgcaggCTTAGTAGTGGCTTA------------CAGGTTTTGAAGCATAAAATTCAGATAGGGGTGAGGACAggtatggaccctaggaacataaatgtgatacaatccctatgttatggctca Alignment from CESAR gCTGAGCAGTGGCTTACTGAACGTGCTTGAGGTCCTGAAGCATAAAGTGAAGATAGGGCTGGGGACAg gctgagcagtcagctagatctgggtgaatgctctggtttctcccatgcaggCTTAGTAGTGGCTTA------------CAGGTTTTGAAGCATAAAATTCAGATAGGGGTGAGGACAggtatggaccctaggaacataaatgtgatacaatccctatgttatggctca Alignment from Spaln_aa2Genome GCTGAGCAGTGGCTTACTGAACGTGCTTGAGGTCCTGAAGCATAAAGTGAAGATAGGGCTGGGGACAG gctgagcagtcagctagatctgggtgaatgctctggtttctcccatgcagGCTTAGTAGTGGC------------TTACAGGTTTTGAAGCATAAAATTCAGATAGGGGTGAGGACAGgtatggaccctaggaacataaatgtgatacaatccctatgttatggctca Alignment from Spaln_nt2Genome GCTGAGCAGTGGCTTACTGAACGTGCTTGAGGTCCTGAAGCATAAAGTGAAGATAGGGCTGGGGACAG gctgagcagtcagctagatctgggtgaatgctctggtttctcccatgcagGCTTAGTAGTGGCTTAC------------AGGTTTTGAAGCATAAAATTCAGATAGGGGTGAGGACAGgtatggaccctaggaacataaatgtgatacaatccctatgttatggctca Alignment from Pairagon GCTGAGCAGTGGCTTACTGAACGTGCTTGAGGTCCTGAAGCATAAAGTGAAGATAGGGCTGGGGACAG gctgagcagtcagctagatctgggtgaatgctctggtttctcccatgcagGCTTAGTAGTGGCTTAC------------AGGTTTTGAAGCATAAAATTCAGATAGGGGTGAGGACAGgtatggaccctaggaacataaatgtgatacaatccctatgttatggctca Alignment from Exonerate_protein2genome GCTGAGCAGTGGCTTACTGAACGTGCTTGAGGTCCTGAAGCATAAAGTGAAGATAGGGCTGGGGACAG gctgagcagtcagctagatctgggtgaatgctctggtttctcccatgcagGCTTAGTAGTGGC------------TTACAGGTTTTGAAGCATAAAATTCAGATAGGGGTGAGGACAGgtatggaccctaggaacataaatgtgatacaatccctatgttatggctca Alignment from Exonerate_coding2genome gctgagcagtcagctagatctgggtgaatgctctggtttctcccatgcaggcttagtagtggcttacaggttttgaagcataaaattcagataggggtgaggacaggtatggaccctaggaacataaatgtgatacaatccctatgttatggctca Alignment from GeneWise GCTGAGCAGTGGCTTACTGAACGTGCTTGAGGTCCTGAAGCATAAAGTGAAGATAGGG gctgagcagtcagctagatctgggtgaatgctctggtttctcccatgcagGCTTAGTAGTGGCTTA------------CAGGTTTTGAAGCATAAAATTCAGATAGGGgtgaggacaggtatggaccctaggaacataaatgtgatacaatccctatgttatggctca #### Gda_ID4900_5 --> 2 - 2 Original Alignment atAAATTTGGGCAGCGAGCATTTGTGGGCAAAGTATGCATGGATTTGAATGATACTGTTCCAGAATACAAGGAGACCACCGAGGAGTCAGTCAAGGAGACAGAGag ctcctagaatttctgcttagtacatgattttcttctctttgttcttgcagatAAATTTGGTCAGCGGGCATTTGTGGGCAAGGTATGTATGGATCTGAATGATACTGTTCTAGAGTACAAGGAAACCACTGAGGAGTCAGTCAAGGAGACTGAGaggtgagggacctgggagcacatgtagtaccacagtctatacaaataattcc Alignment from CESAR atAAATTTGGGCAGCGAGCATTTGTGGGCAAAGTATGCATGGATTTGAATGATACTGTTCCAGAATACAAGGAGACCACCGAGGAGTCAGTCAAGGAGACAGAGag ctcctagaatttctgcttagtacatgattttcttctctttgttcttgcagatAAATTTGGTCAGCGGGCATTTGTGGGCAAGGTATGTATGGATCTGAATGATACTGTTCTAGAGTACAAGGAAACCACTGAGGAGTCAGTCAAGGAGACTGAGaggtgagggacctgggagcacatgtagtaccacagtctatacaaataattcc Alignment from Spaln_aa2Genome ATAAATTTGGGCAGCGAGCATTTGTGGGCAAAGTATGCATGGATTTGAATGATACTGTTCCAGAATACAAGGAGACCACCGAGGAGTCAGTCAAGGAGACAGAGAG ctcctagaatttctgcttagtacatgattttcttctctttgttcttgcagATAAATTTGGTCAGCGGGCATTTGTGGGCAAGGTATGTATGGATCTGAATGATACTGTTCTAGAGTACAAGGAAACCACTGAGGAGTCAGTCAAGGAGACTGAGAGgtgagggacctgggagcacatgtagtaccacagtctatacaaataattcc Alignment from Spaln_nt2Genome ATAAATTTGGGCAGCGAGCATTTGTGGGCAAAGTATGCATGGATTTGAATGATACTGTTCCAGAATACAAGGAGACCACCGAGGAGTCAGTCAAGGAGACAGAGAG ctcctagaatttctgcttagtacatgattttcttctctttgttcttgcagATAAATTTGGTCAGCGGGCATTTGTGGGCAAGGTATGTATGGATCTGAATGATACTGTTCTAGAGTACAAGGAAACCACTGAGGAGTCAGTCAAGGAGACTGAGAGgtgagggacctgggagcacatgtagtaccacagtctatacaaataattcc Alignment from Pairagon ATAAATTTGGGCAGCGAGCATTTGTGGGCAAAGTATGCATGGATTTGAATGATACTGTTCCAGAATACAAGGAGACCACCGAGGAGTCAGTCAAGGAGACAGAGAG ctcctagaatttctgcttagtacatgattttcttctctttgttcttgcagATAAATTTGGTCAGCGGGCATTTGTGGGCAAGGTATGTATGGATCTGAATGATACTGTTCTAGAGTACAAGGAAACCACTGAGGAGTCAGTCAAGGAGACTGAGAGgtgagggacctgggagcacatgtagtaccacagtctatacaaataattcc Alignment from Exonerate_protein2genome ATAAATTTGGGCAGCGAGCATTTGTGGGCAAAGTATGCATGGATTTGAATGATACTGTTCCAGAATACAAGGAGACCACCGAGGAGTCAGTCAAGGAGACAGAGAG ctcctagaatttctgcttagtacatgattttcttctctttgttcttgcagATAAATTTGGTCAGCGGGCATTTGTGGGCAAGGTATGTATGGATCTGAATGATACTGTTCTAGAGTACAAGGAAACCACTGAGGAGTCAGTCAAGGAGACTGAGAGgtgagggacctgggagcacatgtagtaccacagtctatacaaataattcc Alignment from Exonerate_coding2genome ATAAATTTGGGCAGCGAGCATTTGTGGGCAAAGTATGCATGGATTTGAATGATACTGTTCCAGAATACAAGGAGACCACCGAGGAGTCAGTCAAGGAGACAGAGAG ctcctagaatttctgcttagtacatgattttcttctctttgttcttgcagATAAATTTGGTCAGCGGGCATTTGTGGGCAAGGTATGTATGGATCTGAATGATACTGTTCTAGAGTACAAGGAAACCACTGAGGAGTCAGTCAAGGAGACTGAGAGgtgagggacctgggagcacatgtagtaccacagtctatacaaataattcc Alignment from GeneWise ATAAATTTGGGCAGCGAGCATTTGTGGGCAAAGTATGCATGGATTTGAATGATACTGTTCCAGAATACAAGGAGACCACCGAGGAGTCAGTCAAGGAGACAGAGAG ctcctagaatttctgcttagtacatgattttcttctctttgttcttgcagATAAATTTGGTCAGCGGGCATTTGTGGGCAAGGTATGTATGGATCTGAATGATACTGTTCTAGAGTACAAGGAAACCACTGAGGAGTCAGTCAAGGAGACTGAGAGgtgagggacctgggagcacatgtagtaccacagtctatacaaataattcc #### Gda_ID4901_4 --> 0 - 1 Original Alignment AGGAGAACACTGAAGAACGGCACCACCACGGCTTGCTACTTTGGAACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTACAg ctacattagctgattaaatgactttagctggccaacgtgctctccaacagAGGAGAACACTTAATAATGGCACAACAACGGCTTGCTACTTCGGCTCTATTCACACTGCCTCATCCCTGCTCCTTGCA---ATCATGggtaagccattaagttctgacattgacgactagatcgtgtcaaaatttgtg Alignment from CESAR AGGAGAACACTGAAGAACGGCACCACCACGGCTTGCTACTTTGGAACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTACAg ctacattagctgattaaatgactttagctggccaacgtgctctccaacagAGGAGAACACTTAATAATGGCACAACAACGGCTTGCTACTTCGGCTCTATTCACACTGCCTCATCCCTGCTCCTTGCA---ATCATGggtaagccattaagttctgacattgacgactagatcgtgtcaaaatttgtg Alignment from Spaln_aa2Genome AGGAGAACACTGAAGAACGGCACCACCACGGCTTGCTACTTTGGAACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTACAG ctacattagctgattaaatgactttagctggccaacgtgctctccaacagAGGAGAACACTTAATAATGGCACAACAACGGCTTGCTACTTCGGCTCTATTCACACTGCCTCATCCCTGCTCCTTGCA---ATCATGGgtaagccattaagttctgacattgacgactagatcgtgtcaaaatttgtg Alignment from Spaln_nt2Genome AGGAGAACACTGAAGAACGGCACCACCACGGCTTGCTACTTTGGAACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTACAG ctacattagctgattaaatgactttagctggccaacgtgctctccaacagAGGAGAACACTTAATAATGGCACAACAACGGCTTGCTACTTCGGCTCTATTCACACTGCCTCATCCCTGCTCCTTGC---AATCATGGgtaagccattaagttctgacattgacgactagatcgtgtcaaaatttgtg Alignment from Pairagon AGGAGAACACTGAAGAACGGCACCACCACGGCTTGCTACTTTGGAACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTACAG ctacattagctgattaaatgactttagctggccaacgtgctctccaacagAGGAGAACACTTAATAATGGCACAACAACGGCTTGCTACTTCGGCTCTATTCACACTGCCTCATCCCTGCTCCTTGC---AATCATGGgtaagccattaagttctgacattgacgactagatcgtgtcaaaatttgtg Alignment from Exonerate_protein2genome AGGAGAACACTGAAGAACGGCACCACCACGGCTTGCTACTTTGGAACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTACAG ctacattagctgattaaatgactttagctggccaacgtgctctccaacagAGGAGAACACTTAATAATGGCACAACAACGGCTTGCTACTTCGGCTCTATTCACACTGCCTCATCCCTGCTCCTTGCA---ATCATGGgtaagccattaagttctgacattgacgactagatcgtgtcaaaatttgtg Alignment from Exonerate_coding2genome AGGAGAACACTGAAGAACGGCACCACCACGGCTTGCTACTTTGGAACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTACAG ctacattagctgattaaatgactttagctggccaacgtgctctccaacagAGGAGAACACTTAATAATGGCACAACAACGGCTTGCTACTTCGGCTCTATTCACACTGCCTCATCCCTGCTCCTTGCA---ATCATGGgtaagccattaagttctgacattgacgactagatcgtgtcaaaatttgtg Alignment from GeneWise AGGAGAACACTGAAGAACGGCACCACCACGGCTTGCTACTTTGGAACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTACAG ctacattagctgattaaatgactttagctggccaacgtgctctccaacagAGGAGAACACTTAATAATGGCACAACAACGGCTTGCTACTTCGGCTCTATTCACACTGCCTCATCCCTGCTCCTTGCA---ATCATGGgtaagccattaagttctgacattgacgactagatcgtgtcaaaatttgtg #### Gfra1_ID12598_7 --> 2 - 0 Original Alignment aaAATGCAATTCAAGCCTTTGGCAATGGCTCGGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACCACTGCCACGACTACCACTGCCTTCCGGATCAAGAACAAGCCTCTAGGGCCAGCAGGCTCTGAGAATGAGATTCCCACACACGTTTTACCACCGTGTGCTAATTTGCAG tctgtgtctgagatggatctgaaaggaaagtattcttacttaatttttagaaAATGCAATTCAAGCGTTTGGCAATGGCTCAGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACGACTGCCACGACTATCACTGCCTTCCGAATCAAGAACAAGCCTCTAGGGCCAGCAGGTTCTGAGAATGAGATGCCCACACACATTCTACCACCATGTGCTAATTTGCAGgtaaatagtggttgttccttttcaatgacaaactcccagatagaccagaa Alignment from CESAR aaAATGCAATTCAAGCCTTTGGCAATGGCTCGGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACCACTGCCACGACTACCACTGCCTTCCGGATCAAGAACAAGCCTCTAGGGCCAGCAGGCTCTGAGAATGAGATTCCCACACACGTTTTACCACCGTGTGCTAATTTGCAG tctgtgtctgagatggatctgaaaggaaagtattcttacttaatttttagaaAATGCAATTCAAGCGTTTGGCAATGGCTCAGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACGACTGCCACGACTATCACTGCCTTCCGAATCAAGAACAAGCCTCTAGGGCCAGCAGGTTCTGAGAATGAGATGCCCACACACATTCTACCACCATGTGCTAATTTGCAGgtaaatagtggttgttccttttcaatgacaaactcccagatagaccagaa Alignment from Spaln_aa2Genome AAAATGCAATTCAAGCCTTTGGCAATGGCTCGGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACCACTGCCACGACTACCACTGCCTTCCGGATCAAGAACAAGCCTCTAGGGCCAGCAGGCTCTGAGAATGAGATTCCCACACACGTTTTACCACCGTGTGCTAATTTGCAG tctgtgtctgagatggatctgaaaggaaagtattcttacttaatttttagAAAATGCAATTCAAGCGTTTGGCAATGGCTCAGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACGACTGCCACGACTATCACTGCCTTCCGAATCAAGAACAAGCCTCTAGGGCCAGCAGGTTCTGAGAATGAGATGCCCACACACATTCTACCACCATGTGCTAATTTGCAGgtaaatagtggttgttccttttcaatgacaaactcccagatagaccagaa Alignment from Spaln_nt2Genome AAAATGCAATTCAAGCCTTTGGCAATGGCTCGGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACCACTGCCACGACTACCACTGCCTTCCGGATCAAGAACAAGCCTCTAGGGCCAGCAGGCTCTGAGAATGAGATTCCCACACACGTTTTACCACCGTGTGCTAATTTGCAG tctgtgtctgagatggatctgaaaggaaagtattcttacttaatttttagAAAATGCAATTCAAGCGTTTGGCAATGGCTCAGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACGACTGCCACGACTATCACTGCCTTCCGAATCAAGAACAAGCCTCTAGGGCCAGCAGGTTCTGAGAATGAGATGCCCACACACATTCTACCACCATGTGCTAATTTGCAGgtaaatagtggttgttccttttcaatgacaaactcccagatagaccagaa Alignment from Pairagon AAAATGCAATTCAAGCCTTTGGCAATGGCTCGGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACCACTGCCACGACTACCACTGCCTTCCGGATCAAGAACAAGCCTCTAGGGCCAGCAGGCTCTGAGAATGAGATTCCCACACACGTTTTACCACCGTGTGCTAATTTGCAG tctgtgtctgagatggatctgaaaggaaagtattcttacttaatttttagAAAATGCAATTCAAGCGTTTGGCAATGGCTCAGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACGACTGCCACGACTATCACTGCCTTCCGAATCAAGAACAAGCCTCTAGGGCCAGCAGGTTCTGAGAATGAGATGCCCACACACATTCTACCACCATGTGCTAATTTGCAGgtaaatagtggttgttccttttcaatgacaaactcccagatagaccagaa Alignment from Exonerate_protein2genome AAAATGCAATTCAAGCCTTTGGCAATGGCTCGGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACCACTGCCACGACTACCACTGCCTTCCGGATCAAGAACAAGCCTCTAGGGCCAGCAGGCTCTGAGAATGAGATTCCCACACACGTTTTACCACCGTGTGCTAATTTGCAG tctgtgtctgagatggatctgaaaggaaagtattcttacttaatttttagAAAATGCAATTCAAGCGTTTGGCAATGGCTCAGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACGACTGCCACGACTATCACTGCCTTCCGAATCAAGAACAAGCCTCTAGGGCCAGCAGGTTCTGAGAATGAGATGCCCACACACATTCTACCACCATGTGCTAATTTGCAGgtaaatagtggttgttccttttcaatgacaaactcccagatagaccagaa Alignment from Exonerate_coding2genome AAAATGCAATTCAAGCCTTTGGCAATGGCTCGGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACCACTGCCACGACTACCACTGCCTTCCGGATCAAGAACAAGCCTCTAGGGCCAGCAGGCTCTGAGAATGAGATTCCCACACACGTTTTACCACCGTGTGCTAATTTGCAG tctgtgtctgagatggatctgaaaggaaagtattcttacttaatttttagAAAATGCAATTCAAGCGTTTGGCAATGGCTCAGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACGACTGCCACGACTATCACTGCCTTCCGAATCAAGAACAAGCCTCTAGGGCCAGCAGGTTCTGAGAATGAGATGCCCACACACATTCTACCACCATGTGCTAATTTGCAGgtaaatagtggttgttccttttcaatgacaaactcccagatagaccagaa Alignment from GeneWise AAAATGCAATTCAAGCCTTTGGCAATGGCTCGGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACCACTGCCACGACTACCACTGCCTTCCGGATCAAGAACAAGCCTCTAGGGCCAGCAGGCTCTGAGAATGAGATTCCCACACACGTTTTACCACCGTGTGCTAATTTGCAG tctgtgtctgagatggatctgaaaggaaagtattcttacttaatttttagAAAATGCAATTCAAGCGTTTGGCAATGGCTCAGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACGACTGCCACGACTATCACTGCCTTCCGAATCAAGAACAAGCCTCTAGGGCCAGCAGGTTCTGAGAATGAGATGCCCACACACATTCTACCACCATGTGCTAATTTGCAGgtaaatagtggttgttccttttcaatgacaaactcccagatagaccagaa #### Gif_ID3281_5 --> 2 - 0 Original Alignment acACAGGAGCAGTGGCAACCTTGGCCCTGACCTGTATGTACAACAAGATTCCTGTGGGTTCTCAAGAAAACTACAGAGACCTGTTTGGTCAGGCACTGAAGGCTATTGTGGAGAAGATCAGCTTAAGGATCAAAGCTGATGGCATCATCGGAGACATCTACAGCACTGGCCTTGCCATGCAG ataaggattggctgaagtgtaggttgcacacaagccttgtatattttcagacACAACAGCAGTGGCGAGCCTGGCTCTGACTTGTATGTACAACAAGATTCCTGTTGGTTCCCAAGAAAACTACAGAGACCAGTTTGGACAAGCTTTAAAGGCTATTATAGAAAAGATCAGTTTAAGTATAAAAGCCGATGGCATTATTGGGGAGATATACAGCACTGGTCTTGCCATGCAGgtgagtcatactatgtactaggacgtacttagaacattgctccatacagt Alignment from CESAR acACAGGAGCAGTGGCAACCTTGGCCCTGACCTGTATGTACAACAAGATTCCTGTGGGTTCTCAAGAAAACTACAGAGACCTGTTTGGTCAGGCACTGAAGGCTATTGTGGAGAAGATCAGCTTAAGGATCAAAGCTGATGGCATCATCGGAGACATCTACAGCACTGGCCTTGCCATGCAG ataaggattggctgaagtgtaggttgcacacaagccttgtatattttcagacACAACAGCAGTGGCGAGCCTGGCTCTGACTTGTATGTACAACAAGATTCCTGTTGGTTCCCAAGAAAACTACAGAGACCAGTTTGGACAAGCTTTAAAGGCTATTATAGAAAAGATCAGTTTAAGTATAAAAGCCGATGGCATTATTGGGGAGATATACAGCACTGGTCTTGCCATGCAGgtgagtcatactatgtactaggacgtacttagaacattgctccatacagt Alignment from Spaln_aa2Genome ACACAGGAGCAGTGGCAACCTTGGCCCTGACCTGTATGTACAACAAGATTCCTGTGGGTTCTCAAGAAAACTACAGAGACCTGTTTGGTCAGGCACTGAAGGCTATTGTGGAGAAGATCAGCTTAAGGATCAAAGCTGATGGCATCATCGGAGACATCTACAGCACTGGCCTTGCCATGCAG ataaggattggctgaagtgtaggttgcacacaagccttgtatattttcagACACAACAGCAGTGGCGAGCCTGGCTCTGACTTGTATGTACAACAAGATTCCTGTTGGTTCCCAAGAAAACTACAGAGACCAGTTTGGACAAGCTTTAAAGGCTATTATAGAAAAGATCAGTTTAAGTATAAAAGCCGATGGCATTATTGGGGAGATATACAGCACTGGTCTTGCCATGCAGgtgagtcatactatgtactaggacgtacttagaacattgctccatacagt Alignment from Spaln_nt2Genome ACACAGGAGCAGTGGCAACCTTGGCCCTGACCTGTATGTACAACAAGATTCCTGTGGGTTCTCAAGAAAACTACAGAGACCTGTTTGGTCAGGCACTGAAGGCTATTGTGGAGAAGATCAGCTTAAGGATCAAAGCTGATGGCATCATCGGAGACATCTACAGCACTGGCCTTGCCATGCAG ataaggattggctgaagtgtaggttgcacacaagccttgtatattttcagACACAACAGCAGTGGCGAGCCTGGCTCTGACTTGTATGTACAACAAGATTCCTGTTGGTTCCCAAGAAAACTACAGAGACCAGTTTGGACAAGCTTTAAAGGCTATTATAGAAAAGATCAGTTTAAGTATAAAAGCCGATGGCATTATTGGGGAGATATACAGCACTGGTCTTGCCATGCAGgtgagtcatactatgtactaggacgtacttagaacattgctccatacagt Alignment from Pairagon ACACAGGAGCAGTGGCAACCTTGGCCCTGACCTGTATGTACAACAAGATTCCTGTGGGTTCTCAAGAAAACTACAGAGACCTGTTTGGTCAGGCACTGAAGGCTATTGTGGAGAAGATCAGCTTAAGGATCAAAGCTGATGGCATCATCGGAGACATCTACAGCACTGGCCTTGCCATGCAG ataaggattggctgaagtgtaggttgcacacaagccttgtatattttcagACACAACAGCAGTGGCGAGCCTGGCTCTGACTTGTATGTACAACAAGATTCCTGTTGGTTCCCAAGAAAACTACAGAGACCAGTTTGGACAAGCTTTAAAGGCTATTATAGAAAAGATCAGTTTAAGTATAAAAGCCGATGGCATTATTGGGGAGATATACAGCACTGGTCTTGCCATGCAGgtgagtcatactatgtactaggacgtacttagaacattgctccatacagt Alignment from Exonerate_protein2genome ACACAGGAGCAGTGGCAACCTTGGCCCTGACCTGTATGTACAACAAGATTCCTGTGGGTTCTCAAGAAAACTACAGAGACCTGTTTGGTCAGGCACTGAAGGCTATTGTGGAGAAGATCAGCTTAAGGATCAAAGCTGATGGCATCATCGGAGACATCTACAGCACTGGCCTTGCCATGCAG ataaggattggctgaagtgtaggttgcacacaagccttgtatattttcagACACAACAGCAGTGGCGAGCCTGGCTCTGACTTGTATGTACAACAAGATTCCTGTTGGTTCCCAAGAAAACTACAGAGACCAGTTTGGACAAGCTTTAAAGGCTATTATAGAAAAGATCAGTTTAAGTATAAAAGCCGATGGCATTATTGGGGAGATATACAGCACTGGTCTTGCCATGCAGgtgagtcatactatgtactaggacgtacttagaacattgctccatacagt Alignment from Exonerate_coding2genome ACACAGGAGCAGTGGCAACCTTGGCCCTGACCTGTATGTACAACAAGATTCCTGTGGGTTCTCAAGAAAACTACAGAGACCTGTTTGGTCAGGCACTGAAGGCTATTGTGGAGAAGATCAGCTTAAGGATCAAAGCTGATGGCATCATCGGAGACATCTACAGCACTGGCCTTGCCATGCAG ataaggattggctgaagtgtaggttgcacacaagccttgtatattttcagACACAACAGCAGTGGCGAGCCTGGCTCTGACTTGTATGTACAACAAGATTCCTGTTGGTTCCCAAGAAAACTACAGAGACCAGTTTGGACAAGCTTTAAAGGCTATTATAGAAAAGATCAGTTTAAGTATAAAAGCCGATGGCATTATTGGGGAGATATACAGCACTGGTCTTGCCATGCAGgtgagtcatactatgtactaggacgtacttagaacattgctccatacagt Alignment from GeneWise ACACAGGAGCAGTGGCAACCTTGGCCCTGACCTGTATGTACAACAAGATTCCTGTGGGTTCTCAAGAAAACTACAGAGACCTGTTTGGTCAGGCACTGAAGGCTATTGTGGAGAAGATCAGCTTAAGGATCAAAGCTGATGGCATCATCGGAGACATCTACAGCACTGGCCTTGCCATGCAG ataaggattggctgaagtgtaggttgcacacaagccttgtatattttcagACACAACAGCAGTGGCGAGCCTGGCTCTGACTTGTATGTACAACAAGATTCCTGTTGGTTCCCAAGAAAACTACAGAGACCAGTTTGGACAAGCTTTAAAGGCTATTATAGAAAAGATCAGTTTAAGTATAAAAGCCGATGGCATTATTGGGGAGATATACAGCACTGGTCTTGCCATGCAGgtgagtcatactatgtactaggacgtacttagaacattgctccatacagt #### Gldc_ID6394_20 --> 1 - 0 Original Alignment gAAGAAGCACCTCAGCCCCTTTCTGCCCAGCCACCCCGTCATTTCCATAAAGCCAACTGAAGGCACCTGGCCCGTGGGCACTGTCAGTGCAGCCCCGTGGGGTTCCAGCTCCATCCTGCCCATTTCATGGGCTTACATTAAG taagagatttccaacatttctaatttttcgttttatctcaccttatgcagcAAGAAATACCTCACTCCCTTCTTGCCAAGTCATCCCATTATTTCCATAAAGCCATGTGAAGGAACCTGGTCTGTTGGCATCGTCAGTGCAGCTCCATGGGGTTTGAGTCCTATCCTGCCCATTTCATGGGGTTACATTAAGgtgaggctaataatatggatgcctgactgacaggtggacccacatcacta Alignment from CESAR gAAGAAGCACCTCAGCCCCTTTCTGCCCAGCCACCCCGTCATTTCCATAAAGCCAACTGAAGGCACCTGGCCCGTGGGCACTGTCAGTGCAGCCCCGTGGGGTTCCAGCTCCATCCTGCCCATTTCATGGGCTTACATTAAG taagagatttccaacatttctaatttttcgttttatctcaccttatgcagcAAGAAATACCTCACTCCCTTCTTGCCAAGTCATCCCATTATTTCCATAAAGCCATGTGAAGGAACCTGGTCTGTTGGCATCGTCAGTGCAGCTCCATGGGGTTTGAGTCCTATCCTGCCCATTTCATGGGGTTACATTAAGgtgaggctaataatatggatgcctgactgacaggtggacccacatcacta Alignment from Spaln_aa2Genome GAAGAAGCACCTCAGCCCCTTTCTGCCCAGCCACCCCGTCATTTCCATAAAGCCAACTGAAGGCACCTGGCCCGTGGGCACTGTCAGTGCAGCCCCGTGGGGTTCCAGCTCCATCCTGCCCATTTCATGGGCTTACATTAAG taagagatttccaacatttctaatttttcgttttatctcaccttatgcagCAAGAAATACCTCACTCCCTTCTTGCCAAGTCATCCCATTATTTCCATAAAGCCATGTGAAGGAACCTGGTCTGTTGGCATCGTCAGTGCAGCTCCATGGGGTTTGAGTCCTATCCTGCCCATTTCATGGGGTTACATTAAGgtgaggctaataatatggatgcctgactgacaggtggacccacatcacta Alignment from Spaln_nt2Genome GAAGAAGCACCTCAGCCCCTTTCTGCCCAGCCACCCCGTCATTTCCATAAAGCCAACTGAAGGCACCTGGCCCGTGGGCACTGTCAGTGCAGCCCCGTGGGGTTCCAGCTCCATCCTGCCCATTTCATGGGCTTACATTAAG taagagatttccaacatttctaatttttcgttttatctcaccttatgcagCAAGAAATACCTCACTCCCTTCTTGCCAAGTCATCCCATTATTTCCATAAAGCCATGTGAAGGAACCTGGTCTGTTGGCATCGTCAGTGCAGCTCCATGGGGTTTGAGTCCTATCCTGCCCATTTCATGGGGTTACATTAAGgtgaggctaataatatggatgcctgactgacaggtggacccacatcacta Alignment from Pairagon GAAGAAGCACCTCAGCCCCTTTCTGCCCAGCCACCCCGTCATTTCCATAAAGCCAACTGAAGGCACCTGGCCCGTGGGCACTGTCAGTGCAGCCCCGTGGGGTTCCAGCTCCATCCTGCCCATTTCATGGGCTTACATTAAG taagagatttccaacatttctaatttttcgttttatctcaccttatgcagCAAGAAATACCTCACTCCCTTCTTGCCAAGTCATCCCATTATTTCCATAAAGCCATGTGAAGGAACCTGGTCTGTTGGCATCGTCAGTGCAGCTCCATGGGGTTTGAGTCCTATCCTGCCCATTTCATGGGGTTACATTAAGgtgaggctaataatatggatgcctgactgacaggtggacccacatcacta Alignment from Exonerate_protein2genome GAAGAAGCACCTCAGCCCCTTTCTGCCCAGCCACCCCGTCATTTCCATAAAGCCAACTGAAGGCACCTGGCCCGTGGGCACTGTCAGTGCAGCCCCGTGGGGTTCCAGCTCCATCCTGCCCATTTCATGGGCTTACATTAAG taagagatttccaacatttctaatttttcgttttatctcaccttatgcagCAAGAAATACCTCACTCCCTTCTTGCCAAGTCATCCCATTATTTCCATAAAGCCATGTGAAGGAACCTGGTCTGTTGGCATCGTCAGTGCAGCTCCATGGGGTTTGAGTCCTATCCTGCCCATTTCATGGGGTTACATTAAGgtgaggctaataatatggatgcctgactgacaggtggacccacatcacta Alignment from Exonerate_coding2genome GAAGAAGCACCTCAGCCCCTTTCTGCCCAGCCACCCCGTCATTTCCATAAAGCCAACTGAAGGCACCTGGCCCGTGGGCACTGTCAGTGCAGCCCCGTGGGGTTCCAGCTCCATCCTGCCCATTTCATGGGCTTACATTAAG taagagatttccaacatttctaatttttcgttttatctcaccttatgcagCAAGAAATACCTCACTCCCTTCTTGCCAAGTCATCCCATTATTTCCATAAAGCCATGTGAAGGAACCTGGTCTGTTGGCATCGTCAGTGCAGCTCCATGGGGTTTGAGTCCTATCCTGCCCATTTCATGGGGTTACATTAAGgtgaggctaataatatggatgcctgactgacaggtggacccacatcacta Alignment from GeneWise GAAGAAGCACCTCAGCCCCTTTCTGCCCAGCCACCCCGTCATTTCCATAAAGCCAACTGAAGGCACCTGGCCCGTGGGCACTGTCAGTGCAGCCCCGTGGGGTTCCAGCTCCATCCTGCCCATTTCATGGGCTTACATTAAG taagagatttccaacatttctaatttttcgttttatctcaccttatgcagCAAGAAATACCTCACTCCCTTCTTGCCAAGTCATCCCATTATTTCCATAAAGCCATGTGAAGGAACCTGGTCTGTTGGCATCGTCAGTGCAGCTCCATGGGGTTTGAGTCCTATCCTGCCCATTTCATGGGGTTACATTAAGgtgaggctaataatatggatgcctgactgacaggtggacccacatcacta #### Gldc_ID6399_16 --> 1 - 0 Original Alignment cGGAGCGCAGGGGGAGTACGCCGGACTGGCCACCATCAGAGCGTACTTAGACCAGAAAGGAGAGAGACACAGAACA cagaaagctgtatgatgcgctctctttgataactccttctcttgttctagtGGAGCACAGGGGGAGTATGCTGGATTGGCCACTATCAGATCATACTTAGACCAGGAAGGGGAGAGACACAGAACAgtgagctagtggtcttatcaatagcagttccctagctattcccgtctgcc Alignment from CESAR cGGAGCGCAGGGGGAGTACGCCGGACTGGCCACCATCAGAGCGTACTTAGACCAGAAAGGAGAGAGACACAGAACA cagaaagctgtatgatgcgctctctttgataactccttctcttgttctagtGGAGCACAGGGGGAGTATGCTGGATTGGCCACTATCAGATCATACTTAGACCAGGAAGGGGAGAGACACAGAACAgtgagctagtggtcttatcaatagcagttccctagctattcccgtctgcc Alignment from Spaln_aa2Genome CGGAGCGCAGGGGGAGTACGCCGGACTGGCCACCATCAGAGCGTACTTAGACCAGAAAGGAGAGAGACACAGAACA cagaaagctgtatgatgcgctctctttgataactccttctcttgttctagTGGAGCACAGGGGGAGTATGCTGGATTGGCCACTATCAGATCATACTTAGACCAGGAAGGGGAGAGACACAGAACAgtgagctagtggtcttatcaatagcagttccctagctattcccgtctgcc Alignment from Spaln_nt2Genome CGGAGCGCAGGGGGAGTACGCCGGACTGGCCACCATCAGAGCGTACTTAGACCAGAAAGGAGAGAGACACAGAACA cagaaagctgtatgatgcgctctctttgataactccttctcttgttctagTGGAGCACAGGGGGAGTATGCTGGATTGGCCACTATCAGATCATACTTAGACCAGGAAGGGGAGAGACACAGAACAgtgagctagtggtcttatcaatagcagttccctagctattcccgtctgcc Alignment from Pairagon CGGAGCGCAGGGGGAGTACGCCGGACTGGCCACCATCAGAGCGTACTTAGACCAGAAAGGAGAGAGACACAGAACA cagaaagctgtatgatgcgctctctttgataactccttctcttgttctagTGGAGCACAGGGGGAGTATGCTGGATTGGCCACTATCAGATCATACTTAGACCAGGAAGGGGAGAGACACAGAACAgtgagctagtggtcttatcaatagcagttccctagctattcccgtctgcc Alignment from Exonerate_protein2genome CGGAGCGCAGGGGGAGTACGCCGGACTGGCCACCATCAGAGCGTACTTAGACCAGAAAGGAGAGAGACACAGAACA cagaaagctgtatgatgcgctctctttgataactccttctcttgttctagTGGAGCACAGGGGGAGTATGCTGGATTGGCCACTATCAGATCATACTTAGACCAGGAAGGGGAGAGACACAGAACAgtgagctagtggtcttatcaatagcagttccctagctattcccgtctgcc Alignment from Exonerate_coding2genome CGGAGCGCAGGGGGAGTACGCCGGACTGGCCACCATCAGAGCGTACTTAGACCAGAAAGGAGAGAGACACAGAACA cagaaagctgtatgatgcgctctctttgataactccttctcttgttctagTGGAGCACAGGGGGAGTATGCTGGATTGGCCACTATCAGATCATACTTAGACCAGGAAGGGGAGAGACACAGAACAgtgagctagtggtcttatcaatagcagttccctagctattcccgtctgcc Alignment from GeneWise CGGAGCGCAGGGGGAGTACGCCGGACTGGCCACCATCAGAGCGTACTTAGACCAGAAAGGAGAGAGACACAGAACA cagaaagctgtatgatgcgctctctttgataactccttctcttgttctagTGGAGCACAGGGGGAGTATGCTGGATTGGCCACTATCAGATCATACTTAGACCAGGAAGGGGAGAGACACAGAACAgtgagctagtggtcttatcaatagcagttccctagctattcccgtctgcc #### Gldc_ID6400_15 --> 0 - 2 Original Alignment CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACag tgttcttgagtaaatcactgtgcttgttttttgcctccctccaactccagCCTCTCACATGGAGGGAATTTGCCAACATTTACCCATTTGTACCACTAGATCAAGCCCATGGGTACCAACAACTTATTCAAGGGTTTGAAAAAGATCTGTGCGAGATAACAGGTTATGACCAAGTCTCATTCCAATCAAACaggtaagagccagcgcatttctttatggttggagtaataaaattgtccttca Alignment from CESAR CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACag tgttcttgagtaaatcactgtgcttgttttttgcctccctccaactccagCCTCTCACATGGAGGGAATTTGCCAACATTTACCCATTTGTACCACTAGATCAAGCCCATGGGTACCAACAACTTATTCAAGGGTTTGAAAAAGATCTGTGCGAGATAACAGGTTATGACCAAGTCTCATTCCAATCAAACaggtaagagccagcgcatttctttatggttggagtaataaaattgtccttca Alignment from Spaln_aa2Genome CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACAG tgttcttgagtaaatcactgtgcttgttttttgcctccctccaactccagCCTCTCACATGGAGGGAATTTGCCAACATTTACCCATTTGTACCACTAGATCAAGCCCATGGGTACCAACAACTTATTCAAGGGTTTGAAAAAGATCTGTGCGAGATAACAGGTTATGACCAAGTCTCATTCCAATCAAACAGgtaagagccagcgcatttctttatggttggagtaataaaattgtccttca Alignment from Spaln_nt2Genome CCA-TCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACAG tgttcttgagtaaatcactgtgcttgttttttgcctccctccaactccagCCTCTCACATGGAGGGAATTTGCCAACATTTACCCATTTGTACCACTAGATCAAGCCCATGGGTACCAACAACTTATTCAAGGGTTTGAAAAAGATCTGTGCGAGATAACAGGTTATGACCAAGTCTCATTCCAATCAAACAGgtaagagccagcgcatttctttatggttggagtaataaaattgtccttca Alignment from Pairagon CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACAG tgttcttgagtaaatcactgtgcttgttttttgcctccctccaactccagCCTCTCACATGGAGGGAATTTGCCAACATTTACCCATTTGTACCACTAGATCAAGCCCATGGGTACCAACAACTTATTCAAGGGTTTGAAAAAGATCTGTGCGAGATAACAGGTTATGACCAAGTCTCATTCCAATCAAACAGgtaagagccagcgcatttctttatggttggagtaataaaattgtccttca Alignment from Exonerate_protein2genome CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACAG tgttcttgagtaaatcactgtgcttgttttttgcctccctccaactccagCCTCTCACATGGAGGGAATTTGCCAACATTTACCCATTTGTACCACTAGATCAAGCCCATGGGTACCAACAACTTATTCAAGGGTTTGAAAAAGATCTGTGCGAGATAACAGGTTATGACCAAGTCTCATTCCAATCAAACAGgtaagagccagcgcatttctttatggttggagtaataaaattgtccttca Alignment from Exonerate_coding2genome CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACAG tgttcttgagtaaatcactgtgcttgttttttgcctccctccaactccagCCTCTCACATGGAGGGAATTTGCCAACATTTACCCATTTGTACCACTAGATCAAGCCCATGGGTACCAACAACTTATTCAAGGGTTTGAAAAAGATCTGTGCGAGATAACAGGTTATGACCAAGTCTCATTCCAATCAAACAGgtaagagccagcgcatttctttatggttggagtaataaaattgtccttca Alignment from GeneWise CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACAG tgttcttgagtaaatcactgtgcttgttttttgcctccctccaactccagCCTCTCACATGGAGGGAATTTGCCAACATTTACCCATTTGTACCACTAGATCAAGCCCATGGGTACCAACAACTTATTCAAGGGTTTGAAAAAGATCTGTGCGAGATAACAGGTTATGACCAAGTCTCATTCCAATCAAACAGgtaagagccagcgcatttctttatggttggagtaataaaattgtccttca #### Gldc_ID6401_14 --> 0 - 0 Original Alignment GGATCCTGCACCATGAAGCTCAATAGCTCCTCCGAACTTGCA ggtcatagcaagcattactgggtatgtcttctcttctctccttactgcagGGATCTTGCACCATGAAGCTCAATAGCTCAGCTGAGCTTGGTgtaagtcccagtcattaccatatgatgtcatactcacttcgtgagtgcag Alignment from CESAR GGATCCTGCACCATGAAGCTCAATAGCTCCTCCGAACTTGCA ggtcatagcaagcattactgggtatgtcttctcttctctccttactgcagGGATCTTGCACCATGAAGCTCAATAGCTCAGCTGAGCTTGGTgtaagtcccagtcattaccatatgatgtcatactcacttcgtgagtgcag Alignment from Spaln_aa2Genome GGATCCTGCACCATGAAGCTCAATAGCTCCTCCGAACTTGCA ggtcatagcaagcattactgggtatgtcttctcttctctccttactgcagGGATCTTGCACCATGAAGCTCAATAGCTCAGCTGAGCTTGGTgtaagtcccagtcattaccatatgatgtcatactcacttcgtgagtgcag Alignment from Spaln_nt2Genome GGATCCTGCACCATGAAGCTCAATAGCTCCTCCGAACTTGCA ggtcatagcaagcattactgggtatgtcttctcttctctccttactgcagGGATCTTGCACCATGAAGCTCAATAGCTCAGCTGAGCTTGGTgtaagtcccagtcattaccatatgatgtcatactcacttcgtgagtgcag Alignment from Pairagon GGATCCTGCACCATGAAGCTCAATAGCTCCTCCGAACTTGCA ggtcatagcaagcattactgggtatgtcttctcttctctccttactgcagGGATCTTGCACCATGAAGCTCAATAGCTCAGCTGAGCTTGGTgtaagtcccagtcattaccatatgatgtcatactcacttcgtgagtgcag Alignment from Exonerate_protein2genome GGATCCTGCACCATGAAGCTCAATAGCTCCTCCGAACTTGCA ggtcatagcaagcattactgggtatgtcttctcttctctccttactgcagGGATCTTGCACCATGAAGCTCAATAGCTCAGCTGAGCTTGGTgtaagtcccagtcattaccatatgatgtcatactcacttcgtgagtgcag Alignment from Exonerate_coding2genome GGATCCTGCACCATGAAGCTCAATAGCTCCTCCGAACTTGCA ggtcatagcaagcattactgggtatgtcttctcttctctccttactgcagGGATCTTGCACCATGAAGCTCAATAGCTCAGCTGAGCTTGGTgtaagtcccagtcattaccatatgatgtcatactcacttcgtgagtgcag Alignment from GeneWise GGATCCTGCACCATGAAGCTCAATAGCTCCTCCGAACTTGCA ggtcatagcaagcattactgggtatgtcttctcttctctccttactgcagGGATCTTGCACCATGAAGCTCAATAGCTCAGCTGAGCTTGGTgtaagtcccagtcattaccatatgatgtcatactcacttcgtgagtgcag #### Gldc_ID6402_13 --> 1 - 0 Original Alignment cTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG attgtggatttgcttaactcactgtttatgtttgtttctttgtttttcagtTACCACTCAGAAACTAATCTTGTTCCTTACATGAAGAGATTGGAGAACCAAGACATCTCCCTTCTACACAGTATGATTCCTCTAgtaagtgcagcatgacatggttaccatgtacattggtatgtattaggtgt Alignment from CESAR cTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG attgtggatttgcttaactcactgtttatgtttgtttctttgtttttcagtTACCACTCAGAAACTAATCTTGTTCCTTACATGAAGAGATTGGAGAACCAAGACATCTCCCTTCTACACAGTATGATTCCTCTAgtaagtgcagcatgacatggttaccatgtacattggtatgtattaggtgt Alignment from Spaln_aa2Genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG attgtggatttgcttaactcactgtttatgtttgtttctttgtttttcagTTACCACTCAGAAACTAATCTTGTTCCTTACATGAAGAGATTGGAGAACCAAGACATCTCCCTTCTACACAGTATGATTCCTCTAgtaagtgcagcatgacatggttaccatgtacattggtatgtattaggtgt Alignment from Spaln_nt2Genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG attgtggatttgcttaactcactgtttatgtttgtttctttgtttttcagTTACCACTCAGAAACTAATCTTGTTCCTTACATGAAGAGATTGGAGAACCAAGACATCTCCCTTCTACACAGTATGATTCCTCTAgtaagtgcagcatgacatggttaccatgtacattggtatgtattaggtgt Alignment from Pairagon CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG attgtggatttgcttaactcactgtttatgtttgtttctttgtttttcagTTACCACTCAGAAACTAATCTTGTTCCTTACATGAAGAGATTGGAGAACCAAGACATCTCCCTTCTACACAGTATGATTCCTCTAgtaagtgcagcatgacatggttaccatgtacattggtatgtattaggtgt Alignment from Exonerate_protein2genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG attgtggatttgcttaactcactgtttatgtttgtttctttgtttttcagTTACCACTCAGAAACTAATCTTGTTCCTTACATGAAGAGATTGGAGAACCAAGACATCTCCCTTCTACACAGTATGATTCCTCTAgtaagtgcagcatgacatggttaccatgtacattggtatgtattaggtgt Alignment from Exonerate_coding2genome CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG attgtggatttgcttaactcactgtttatgtttgtttctttgtttttcagTTACCACTCAGAAACTAATCTTGTTCCTTACATGAAGAGATTGGAGAACCAAGACATCTCCCTTCTACACAGTATGATTCCTCTAgtaagtgcagcatgacatggttaccatgtacattggtatgtattaggtgt Alignment from GeneWise CTATCACTCAGAAACTAATCTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG attgtggatttgcttaactcactgtttatgtttgtttctttgtttttcagTTACCACTCAGAAACTAATCTTGTTCCTTACATGAAGAGATTGGAGAACCAAGACATCTCCCTTCTACACAGTATGATTCCTCTAgtaagtgcagcatgacatggttaccatgtacattggtatgtattaggtgt #### Gldc_ID6406_9 --> 0 - 1 Original Alignment GCCCTTTTAGCCAACATGGCTGCCATGTTCGCCATTTACCATGGATCCCAGGGGCTGAAGCACATTGCTAAAAGGGTTCATAATGCTACTTTGATTTTGTCTGAAg aacattgggcatgtttttctaggagttgtgttgggtgtattctccctcagGCCCTTTTAGCCAATATGGCAGCCATATTTGCAATTTACCATGGATTACAGGGGCTGAAGCATATTGCAAAAAAGGTTCATAATGCTACTTTGACCTTGTCTGAAggtttgttgttgcttgatggggatggtattgaatctataaattaccttggt Alignment from CESAR GCCCTTTTAGCCAACATGGCTGCCATGTTCGCCATTTACCATGGATCCCAGGGGCTGAAGCACATTGCTAAAAGGGTTCATAATGCTACTTTGATTTTGTCTGAAg aacattgggcatgtttttctaggagttgtgttgggtgtattctccctcagGCCCTTTTAGCCAATATGGCAGCCATATTTGCAATTTACCATGGATTACAGGGGCTGAAGCATATTGCAAAAAAGGTTCATAATGCTACTTTGACCTTGTCTGAAggtttgttgttgcttgatggggatggtattgaatctataaattaccttggt Alignment from Spaln_aa2Genome GCCCTTTTAGCCAACATGGCTGCCATGTTCGCCATTTACCATGGATCCCAGGGGCTGAAGCACATTGCTAAAAGGGTTCATAATGCTACTTTGATTTTGTCTGAAG aacattgggcatgtttttctaggagttgtgttgggtgtattctccctcagGCCCTTTTAGCCAATATGGCAGCCATATTTGCAATTTACCATGGATTACAGGGGCTGAAGCATATTGCAAAAAAGGTTCATAATGCTACTTTGACCTTGTCTGAAGgtttgttgttgcttgatggggatggtattgaatctataaattaccttggt Alignment from Spaln_nt2Genome GCCCTTTTAGCCAACATGGCTGCCATGTTCGCCATTTACCATGGATCCCAGGGGCTGAAGCACATTGCTAAAAGGGTTCATAATGCTACTTTGATTTTGTCTGAAG aacattgggcatgtttttctaggagttgtgttgggtgtattctccctcagGCCCTTTTAGCCAATATGGCAGCCATATTTGCAATTTACCATGGATTACAGGGGCTGAAGCATATTGCAAAAAAGGTTCATAATGCTACTTTGACCTTGTCTGAAGgtttgttgttgcttgatggggatggtattgaatctataaattaccttggt Alignment from Pairagon GCCCTTTTAGCCAACATGGCTGCCATGTTCGCCATTTACCATGGATCCCAGGGGCTGAAGCACATTGCTAAAAGGGTTCATAATGCTACTTTGATTTTGTCTGAAG aacattgggcatgtttttctaggagttgtgttgggtgtattctccctcagGCCCTTTTAGCCAATATGGCAGCCATATTTGCAATTTACCATGGATTACAGGGGCTGAAGCATATTGCAAAAAAGGTTCATAATGCTACTTTGACCTTGTCTGAAGgtttgttgttgcttgatggggatggtattgaatctataaattaccttggt Alignment from Exonerate_protein2genome GCCCTTTTAGCCAACATGGCTGCCATGTTCGCCATTTACCATGGATCCCAGGGGCTGAAGCACATTGCTAAAAGGGTTCATAATGCTACTTTGATTTTGTCTGAAG aacattgggcatgtttttctaggagttgtgttgggtgtattctccctcagGCCCTTTTAGCCAATATGGCAGCCATATTTGCAATTTACCATGGATTACAGGGGCTGAAGCATATTGCAAAAAAGGTTCATAATGCTACTTTGACCTTGTCTGAAGgtttgttgttgcttgatggggatggtattgaatctataaattaccttggt Alignment from Exonerate_coding2genome GCCCTTTTAGCCAACATGGCTGCCATGTTCGCCATTTACCATGGATCCCAGGGGCTGAAGCACATTGCTAAAAGGGTTCATAATGCTACTTTGATTTTGTCTGAAG aacattgggcatgtttttctaggagttgtgttgggtgtattctccctcagGCCCTTTTAGCCAATATGGCAGCCATATTTGCAATTTACCATGGATTACAGGGGCTGAAGCATATTGCAAAAAAGGTTCATAATGCTACTTTGACCTTGTCTGAAGgtttgttgttgcttgatggggatggtattgaatctataaattaccttggt Alignment from GeneWise GCCCTTTTAGCCAACATGGCTGCCATGTTCGCCATTTACCATGGATCCCAGGGGCTGAAGCACATTGCTAAAAGGGTTCATAATGCTACTTTGATTTTGTCTGAAG aacattgggcatgtttttctaggagttgtgttgggtgtattctccctcagGCCCTTTTAGCCAATATGGCAGCCATATTTGCAATTTACCATGGATTACAGGGGCTGAAGCATATTGCAAAAAAGGTTCATAATGCTACTTTGACCTTGTCTGAAGgtttgttgttgcttgatggggatggtattgaatctataaattaccttggt #### Gldc_ID6416_2 --> 0 - 1 Original Alignment AGCATTGATGAGCTCATCGAGAAGACGGTCCCCGCCAGCATCCGCTTGAAGAGACCCTTGAAAATGGAAGACCCTATTt agtttcagaggtccggtaccctactgtcatttgattttctttgtctctagATCATTGATGAGGTCATTGAAAAGACAGTACCTGCAAGCATCCGATTGAAGAGACCTTTGAAGATGGAGGACCCTATTtgtcggcaacagatacaaagaagtcccagtggcgtctttctggcttttggt Alignment from CESAR AGCATTGATGAGCTCATCGAGAAGACGGTCCCCGCCAGCATCCGCTTGAAGAGACCCTTGAAAATGGAAGACCCTATTt agtttcagaggtccggtaccctactgtcatttgattttctttgtctctagATCATTGATGAGGTCATTGAAAAGACAGTACCTGCAAGCATCCGATTGAAGAGACCTTTGAAGATGGAGGACCCTATTtgtcggcaacagatacaaagaagtcccagtggcgtctttctggcttttggt Alignment from Spaln_aa2Genome AGCATTGATGAGCTCATCGAGAAGACGGTCCCCGCCAGCATCCGCTTGAAGAGACCCTTGAAAATGGAAGACCCTATTT agtttcagaggtccggtaccctactgtcatttgattttctttgtctctagATCATTGATGAGGTCATTGAAAAGACAGTACCTGCAAGCATCCGATTGAAGAGACCTTTGAAGATGGAGGACCCTATTTgtcggcaacagatacaaagaagtcccagtggcgtctttctggcttttggt Alignment from Spaln_nt2Genome AGCATTGATGAGCTCATCGAGAAGACGGTCCCCGCCAGCATCCGCTTGAAGAGACCCTTGAAAATGGAAGACCCTATTT agtttcagaggtccggtaccctactgtcatttgattttctttgtctctagATCATTGATGAGGTCATTGAAAAGACAGTACCTGCAAGCATCCGATTGAAGAGACCTTTGAAGATGGAGGACCCTATTTgtcggcaacagatacaaagaagtcccagtggcgtctttctggcttttggt Alignment from Pairagon AGCATTGATGAGCTCATCGAGAAGACGGTCCCCGCCAGCATCCGCTTGAAGAGACCCTTGAAAATGGAAGACCCTATTT agtttcagaggtccggtaccctactgtcatttgattttctttgtctctagATCATTGATGAGGTCATTGAAAAGACAGTACCTGCAAGCATCCGATTGAAGAGACCTTTGAAGATGGAGGACCCTATTTgtcggcaacagatacaaagaagtcccagtggcgtctttctggcttttggt Alignment from Exonerate_protein2genome AGCATTGATGAGCTCATCGAGAAGACGGTCCCCGCCAGCATCCGCTTGAAGAGACCCTTGAAAATGGAAGACCCTATTT agtttcagaggtccggtaccctactgtcatttgattttctttgtctctagATCATTGATGAGGTCATTGAAAAGACAGTACCTGCAAGCATCCGATTGAAGAGACCTTTGAAGATGGAGGACCCTATTTgtcggcaacagatacaaagaagtcccagtggcgtctttctggcttttggt Alignment from Exonerate_coding2genome AGCATTGATGAGCTCATCGAGAAGACGGTCCCCGCCAGCATCCGCTTGAAGAGACCCTTGAAAATGGAAGACCCTATTT agtttcagaggtccggtaccctactgtcatttgattttctttgtctctagATCATTGATGAGGTCATTGAAAAGACAGTACCTGCAAGCATCCGATTGAAGAGACCTTTGAAGATGGAGGACCCTATTTgtcggcaacagatacaaagaagtcccagtggcgtctttctggcttttggt Alignment from GeneWise AGCATTGATGAGCTCATCGAGAAGACGGTCCCCGCCAGCATCCGCTTGAAGAGACCCTTGAAAATGGAAGACCCTATTT agtttcagaggtccggtaccctactgtcatttgattttctttgtctctagATCATTGATGAGGTCATTGAAAAGACAGTACCTGCAAGCATCCGATTGAAGAGACCTTTGAAGATGGAGGACCCTATTTgtcggcaacagatacaaagaagtcccagtggcgtctttctggcttttggt #### Glyat_ID3429_2 --> 0 - 0 Original Alignment GTTTATGGGACCGTCTATCACATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAACACAGTGGTTGTCCGCCCTCAAGAACAG agccgctaaacagggtgaattccccagatgcccttcctgcccttccccagGTTTATGGGACTGTCTATCATATGATCCATGGGAACCCATTCAACGTAAAGGCCCTAGTTGACAAGTGGCCAGATTTTAACATAGTTGTTGTCCGCCCTCAAGAACAAgtgagagcatctggcatggagcatacaatcctgtagactaacatttctgc Alignment from CESAR GTTTATGGGACCGTCTATCACATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAACACAGTGGTTGTCCGCCCTCAAGAACAG agccgctaaacagggtgaattccccagatgcccttcctgcccttccccagGTTTATGGGACTGTCTATCATATGATCCATGGGAACCCATTCAACGTAAAGGCCCTAGTTGACAAGTGGCCAGATTTTAACATAGTTGTTGTCCGCCCTCAAGAACAAgtgagagcatctggcatggagcatacaatcctgtagactaacatttctgc Alignment from Spaln_aa2Genome GTTTATGGGACCGTCTATCACATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAACACAGTGGTTGTCCGCCCTCAAGAACAG agccgctaaacagggtgaattccccagatgcccttcctgcccttccccagGTTTATGGGACTGTCTATCATATGATCCATGGGAACCCATTCAACGTAAAGGCCCTAGTTGACAAGTGGCCAGATTTTAACATAGTTGTTGTCCGCCCTCAAGAACAAgtgagagcatctggcatggagcatacaatcctgtagactaacatttctgc Alignment from Spaln_nt2Genome GTTTATGGGACCGTCTATCACATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAACACAGTGGTTGTCCGCCCTCAAGAACAG agccgctaaacagggtgaattccccagatgcccttcctgcccttccccagGTTTATGGGACTGTCTATCATATGATCCATGGGAACCCATTCAACGTAAAGGCCCTAGTTGACAAGTGGCCAGATTTTAACATAGTTGTTGTCCGCCCTCAAGAACAAgtgagagcatctggcatggagcatacaatcctgtagactaacatttctgc Alignment from Pairagon GTTTATGGGACCGTCTATCACATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAACACAGTGGTTGTCCGCCCTCAAGAACAG agccgctaaacagggtgaattccccagatgcccttcctgcccttccccagGTTTATGGGACTGTCTATCATATGATCCATGGGAACCCATTCAACGTAAAGGCCCTAGTTGACAAGTGGCCAGATTTTAACATAGTTGTTGTCCGCCCTCAAGAACAAgtgagagcatctggcatggagcatacaatcctgtagactaacatttctgc Alignment from Exonerate_protein2genome GTTTATGGGACCGTCTATCACATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAACACAGTGGTTGTCCGCCCTCAAGAACAG agccgctaaacagggtgaattccccagatgcccttcctgcccttccccagGTTTATGGGACTGTCTATCATATGATCCATGGGAACCCATTCAACGTAAAGGCCCTAGTTGACAAGTGGCCAGATTTTAACATAGTTGTTGTCCGCCCTCAAGAACAAgtgagagcatctggcatggagcatacaatcctgtagactaacatttctgc Alignment from Exonerate_coding2genome GTTTATGGGACCGTCTATCACATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAACACAGTGGTTGTCCGCCCTCAAGAACAG agccgctaaacagggtgaattccccagatgcccttcctgcccttccccagGTTTATGGGACTGTCTATCATATGATCCATGGGAACCCATTCAACGTAAAGGCCCTAGTTGACAAGTGGCCAGATTTTAACATAGTTGTTGTCCGCCCTCAAGAACAAgtgagagcatctggcatggagcatacaatcctgtagactaacatttctgc Alignment from GeneWise GTTTATGGGACCGTCTATCACATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAACACAGTGGTTGTCCGCCCTCAAGAACAG agccgctaaacagggtgaattccccagatgcccttcctgcccttccccagGTTTATGGGACTGTCTATCATATGATCCATGGGAACCCATTCAACGTAAAGGCCCTAGTTGACAAGTGGCCAGATTTTAACATAGTTGTTGTCCGCCCTCAAGAACAAgtgagagcatctggcatggagcatacaatcctgtagactaacatttctgc #### Gm8369_ID3207_3 --> 0 - 0 Original Alignment GGTTTGGATGCTTTGAAGTTAGTTTTAAATATGCTAGAATTCTGCCTTGCTGTGTCCATCTCTGCATTTGGATGTAAAGCTTCCTGCTGTAACTCCAGAGAG gtttgtataaatggctcctttaattgctccactttttctctttttaacagGGTTCCGATGCACTAAAGTTAGTTTTAAACATACTAGAATTCTGCTTAGCTGTACCCATCTCTGCATTTGGATGCAAAGCTTCCTGCTGTAACTCTAGAGAGgtgagtagcagttactgtcgatgttgtttggttatgcttgatctagcagg Alignment from CESAR GGTTTGGATGCTTTGAAGTTAGTTTTAAATATGCTAGAATTCTGCCTTGCTGTGTCCATCTCTGCATTTGGATGTAAAGCTTCCTGCTGTAACTCCAGAGAG gtttgtataaatggctcctttaattgctccactttttctctttttaacagGGTTCCGATGCACTAAAGTTAGTTTTAAACATACTAGAATTCTGCTTAGCTGTACCCATCTCTGCATTTGGATGCAAAGCTTCCTGCTGTAACTCTAGAGAGgtgagtagcagttactgtcgatgttgtttggttatgcttgatctagcagg Alignment from Spaln_aa2Genome GGTTTGGATGCTTTGAAGTTAGTTTTAAATATGCTAGAATTCTGCCTTGCTGTGTCCATCTCTGCATTTGGATGTAAAGCTTCCTGCTGTAACTCCAGAGAG gtttgtataaatggctcctttaattgctccactttttctctttttaacagGGTTCCGATGCACTAAAGTTAGTTTTAAACATACTAGAATTCTGCTTAGCTGTACCCATCTCTGCATTTGGATGCAAAGCTTCCTGCTGTAACTCTAGAGAGgtgagtagcagttactgtcgatgttgtttggttatgcttgatctagcagg Alignment from Spaln_nt2Genome GGTTTGGATGCTTTGAAGTTAGTTTTAAATATGCTAGAATTCTGCCTTGCTGTGTCCATCTCTGCATTTGGATGTAAAGCTTCCTGCTGTAACTCCAGAGAG gtttgtataaatggctcctttaattgctccactttttctctttttaacagGGTTCCGATGCACTAAAGTTAGTTTTAAACATACTAGAATTCTGCTTAGCTGTACCCATCTCTGCATTTGGATGCAAAGCTTCCTGCTGTAACTCTAGAGAGgtgagtagcagttactgtcgatgttgtttggttatgcttgatctagcagg Alignment from Pairagon GGTTTGGATGCTTTGAAGTTAGTTTTAAATATGCTAGAATTCTGCCTTGCTGTGTCCATCTCTGCATTTGGATGTAAAGCTTCCTGCTGTAACTCCAGAGAG gtttgtataaatggctcctttaattgctccactttttctctttttaacagGGTTCCGATGCACTAAAGTTAGTTTTAAACATACTAGAATTCTGCTTAGCTGTACCCATCTCTGCATTTGGATGCAAAGCTTCCTGCTGTAACTCTAGAGAGgtgagtagcagttactgtcgatgttgtttggttatgcttgatctagcagg Alignment from Exonerate_protein2genome GGTTTGGATGCTTTGAAGTTAGTTTTAAATATGCTAGAATTCTGCCTTGCTGTGTCCATCTCTGCATTTGGATGTAAAGCTTCCTGCTGTAACTCCAGAGAG gtttgtataaatggctcctttaattgctccactttttctctttttaacagGGTTCCGATGCACTAAAGTTAGTTTTAAACATACTAGAATTCTGCTTAGCTGTACCCATCTCTGCATTTGGATGCAAAGCTTCCTGCTGTAACTCTAGAGAGgtgagtagcagttactgtcgatgttgtttggttatgcttgatctagcagg Alignment from Exonerate_coding2genome GGTTTGGATGCTTTGAAGTTAGTTTTAAATATGCTAGAATTCTGCCTTGCTGTGTCCATCTCTGCATTTGGATGTAAAGCTTCCTGCTGTAACTCCAGAGAG gtttgtataaatggctcctttaattgctccactttttctctttttaacagGGTTCCGATGCACTAAAGTTAGTTTTAAACATACTAGAATTCTGCTTAGCTGTACCCATCTCTGCATTTGGATGCAAAGCTTCCTGCTGTAACTCTAGAGAGgtgagtagcagttactgtcgatgttgtttggttatgcttgatctagcagg Alignment from GeneWise GGTTTGGATGCTTTGAAGTTAGTTTTAAATATGCTAGAATTCTGCCTTGCTGTGTCCATCTCTGCATTTGGATGTAAAGCTTCCTGCTGTAACTCCAGAGAG gtttgtataaatggctcctttaattgctccactttttctctttttaacagGGTTCCGATGCACTAAAGTTAGTTTTAAACATACTAGAATTCTGCTTAGCTGTACCCATCTCTGCATTTGGATGCAAAGCTTCCTGCTGTAACTCTAGAGAGgtgagtagcagttactgtcgatgttgtttggttatgcttgatctagcagg #### Gna14_ID4044_3 --> 0 - 2 Original Alignment GAAAATGCCCAGATCATCAGGGAAGTGGAAGTAGACAAGGTCACTGCACTCTCTAGAGACCAGGTGGCAGCCATCAAGCAGCTGTGGCTGGATCCCGGAATCCAGGAGTGTTACGACAGGAGGAGGGAGTACCAGCTGTCAGACTCTGCCAAAta cataggatctaaaggggatgtggactgacccttcctctctcttctcatagGAAAATGCCCAAATCATCAGAGAAGCCAAAGTGGAAAAGATCACAGCACTGTCTAGAGACCAGGTCTCC------GAACAGCTATGGCTAGAACGTGGAATCCAGGAGTGTTATGGCAGGAGGAGAGAGTATCAGTTGTCAGATTCTGCGAAAtagtgagtaaatagctggatgcagggaagacaattgcaagttaagcttgcgg Alignment from CESAR GAAAATGCCCAGATCATCAGGGAAGTGGAAGTAGACAAGGTCACTGCACTCTCTAGAGACCAGGTGGCAGCCATCAAGCAGCTGTGGCTGGATCCCGGAATCCAGGAGTGTTACGACAGGAGGAGGGAGTACCAGCTGTCAGACTCTGCCAAAta cataggatctaaaggggatgtggactgacccttcctctctcttctcatagGAAAATGCCCAAATCATCAGAGAAGCCAAAGTGGAAAAGATCACAGCACTGTCTAGAGACCAGGTCTCC------GAACAGCTATGGCTAGAACGTGGAATCCAGGAGTGTTATGGCAGGAGGAGAGAGTATCAGTTGTCAGATTCTGCGAAAtagtgagtaaatagctggatgcagggaagacaattgcaagttaagcttgcgg Alignment from Spaln_aa2Genome GAAAATGCCCAGATCATCAGGGAAGTGGAAGTAGACAAGGTCACTGCACTCTCTAGAGACCAGGTGGCAGCCATCAAGCAGCTGTGGCTGGATCCCGGAATCCAGGAGTGTTACGACAGGAGGAGGGAGTACCAGCTGTCAGACTCTGCCAAATA cataggatctaaaggggatgtggactgacccttcctctctcttctcatagGAAAATGCCCAAATCATCAGAGAAGCCAAAGTGGAAAAGATCACAGCACTGTCTAGAGACCAGGTCTCC------GAACAGCTATGGCTAGAACGTGGAATCCAGGAGTGTTATGGCAGGAGGAGAGAGTATCAGTTGTCAGATTCTGCGAAATAgtgagtaaatagctggatgcagggaagacaattgcaagttaagcttgcgg Alignment from Spaln_nt2Genome GAAAATGCCCAGATCATCAGGGAAGTGGAAGTAGACAAGGTCACTGCACTCTCTAGAGACCAGGTGGCAGCCATCAAGCAGCTGTGGCTGGATCCCGGAATCCAGGAGTGTTACGACAGGAGGAGGGAGTACCAGCTGTCAGACTCTGCCAAATA cataggatctaaaggggatgtggactgacccttcctctctcttctcatagGAAAATGCCCAAATCATCAGAGAAGCCAAAGTGGAAAAGATCACAGCACTGTCTAGAGACCAGGT------CTCCGAACAGCTATGGCTAGAACGTGGAATCCAGGAGTGTTATGGCAGGAGGAGAGAGTATCAGTTGTCAGATTCTGCGAAATAgtgagtaaatagctggatgcagggaagacaattgcaagttaagcttgcgg Alignment from Pairagon GAAAATGCCCAGATCATCAGGGAAGTGGAAGTAGACAAGGTCACTGCACTCTCTAGAGACCAGGTGGCAGCCATCAAGCAGCTGTGGCTGGATCCCGGAATCCAGGAGTGTTACGACAGGAGGAGGGAGTACCAGCTGTCAGACTCTGCCAAATA cataggatctaaaggggatgtggactgacccttcctctctcttctcatagGAAAATGCCCAAATCATCAGAGAAGCCAAAGTGGAAAAGATCACAGCACTGTCTAGAGACCAGGT------CTCCGAACAGCTATGGCTAGAACGTGGAATCCAGGAGTGTTATGGCAGGAGGAGAGAGTATCAGTTGTCAGATTCTGCGAAATAgtgagtaaatagctggatgcagggaagacaattgcaagttaagcttgcgg Alignment from Exonerate_protein2genome GAAAATGCCCAGATCATCAGGGAAGTGGAAGTAGACAAGGTCACTGCACTCTCTAGAGACCAGGTGGCAGCCATCAAGCAGCTGTGGCTGGATCCCGGAATCCAGGAGTGTTACGACAGGAGGAGGGAGTACCAGCTGTCAGACTCTGCCAAATA cataggatctaaaggggatgtggactgacccttcctctctcttctcatagGAAAATGCCCAAATCATCAGAGAAGCCAAAGTGGAAAAGATCACAGCACTGTCTAGAGACCAGGTCTCC------GAACAGCTATGGCTAGAACGTGGAATCCAGGAGTGTTATGGCAGGAGGAGAGAGTATCAGTTGTCAGATTCTGCGAAATAgtgagtaaatagctggatgcagggaagacaattgcaagttaagcttgcgg Alignment from Exonerate_coding2genome GAAAATGCCCAGATCATCAGGGAAGTGGAAGTAGACAAGGTCACTGCACTCTCTAGAGACCAGGTGGCAGCCATCAAGCAGCTGTGGCTGGATCCCGGAATCCAGGAGTGTTACGACAGGAGGAGGGAGTACCAGCTGTCAGACTCTGCCAAATA cataggatctaaaggggatgtggactgacccttcctctctcttctcatagGAAAATGCCCAAATCATCAGAGAAGCCAAAGTGGAAAAGATCACAGCACTGTCTAGAGACCAGGTCTCC------GAACAGCTATGGCTAGAACGTGGAATCCAGGAGTGTTATGGCAGGAGGAGAGAGTATCAGTTGTCAGATTCTGCGAAATAgtgagtaaatagctggatgcagggaagacaattgcaagttaagcttgcgg Alignment from GeneWise GAAAATGCCCAGATCATCAGGGAAGTGGAAGTAGACAAGGTCACTGCACTCTCTAGAGACCAGGTGGCAGCCATCAAGCAGCTGTGGCTGGATCCCGGAATCCAGGAGTGTTACGACAGGAGGAGGGAGTACCAGCTGTCAGACTCTGCCAAATA cataggatctaaaggggatgtggactgacccttcctctctcttctcatagGAAAATGCCCAAATCATCAGAGAAGCCAAAGTGGAAAAGATCACAGCACTGTCTAGAGACCAGGTCTCC------GAACAGCTATGGCTAGAACGTGGAATCCAGGAGTGTTATGGCAGGAGGAGAGAGTATCAGTTGTCAGATTCTGCGAAATAgtgagtaaatagctggatgcagggaagacaattgcaagttaagcttgcgg #### Gna14_ID4045_4 --> 1 - 2 Original Alignment tTACCTGACGGACATTGAGCGTATCGCCATGCCCTCTTTCGTGCCAACACAACAGGATGTGCTTCGTGTTAGAGTGCCCACCACTGGCATCATAGAATATCCATTCGACCTGGAAAACATCATCTTCcg tgtgccttcttcaaatagagccttggcataatttctgtttttcctctcagtTACCTAACAGACATTGAGCGTAATGCCATGCCCTCTTTTGTGCCCACACAACAGGATGTTCTCCGGGTTCGTGTACCTACCAGTGGCATTATAGAATATCCATCTGACTTGGAAAACATTATATATcggtgagtctgtttgcaggatagcatctttttgaaggcatcatgcttgacaa Alignment from CESAR tTACCTGACGGACATTGAGCGTATCGCCATGCCCTCTTTCGTGCCAACACAACAGGATGTGCTTCGTGTTAGAGTGCCCACCACTGGCATCATAGAATATCCATTCGACCTGGAAAACATCATCTTCcg tgtgccttcttcaaatagagccttggcataatttctgtttttcctctcagtTACCTAACAGACATTGAGCGTAATGCCATGCCCTCTTTTGTGCCCACACAACAGGATGTTCTCCGGGTTCGTGTACCTACCAGTGGCATTATAGAATATCCATCTGACTTGGAAAACATTATATATcggtgagtctgtttgcaggatagcatctttttgaaggcatcatgcttgacaa Alignment from Spaln_aa2Genome TTACCTGACGGACATTGAGCGTATCGCCATGCCCTCTTTCGTGCCAACACAACAGGATGTGCTTCGTGTTAGAGTGCCCACCACTGGCATCATAGAATATCCATTCGACCTGGAAAACATCATCTTCCG tgtgccttcttcaaatagagccttggcataatttctgtttttcctctcagTTACCTAACAGACATTGAGCGTAATGCCATGCCCTCTTTTGTGCCCACACAACAGGATGTTCTCCGGGTTCGTGTACCTACCAGTGGCATTATAGAATATCCATCTGACTTGGAAAACATTATATATCGgtgagtctgtttgcaggatagcatctttttgaaggcatcatgcttgacaa Alignment from Spaln_nt2Genome TTACCTGACGGACATTGAGCGTATCGCCATGCCCTCTTTCGTGCCAACACAACAGGATGTGCTTCGTGTTAGAGTGCCCACCACTGGCATCATAGAATATCCATTCGACCTGGAAAACATCATCTTCCG tgtgccttcttcaaatagagccttggcataatttctgtttttcctctcagTTACCTAACAGACATTGAGCGTAATGCCATGCCCTCTTTTGTGCCCACACAACAGGATGTTCTCCGGGTTCGTGTACCTACCAGTGGCATTATAGAATATCCATCTGACTTGGAAAACATTATATATCGgtgagtctgtttgcaggatagcatctttttgaaggcatcatgcttgacaa Alignment from Pairagon TTACCTGACGGACATTGAGCGTATCGCCATGCCCTCTTTCGTGCCAACACAACAGGATGTGCTTCGTGTTAGAGTGCCCACCACTGGCATCATAGAATATCCATTCGACCTGGAAAACATCATCTTCCG tgtgccttcttcaaatagagccttggcataatttctgtttttcctctcagTTACCTAACAGACATTGAGCGTAATGCCATGCCCTCTTTTGTGCCCACACAACAGGATGTTCTCCGGGTTCGTGTACCTACCAGTGGCATTATAGAATATCCATCTGACTTGGAAAACATTATATATCGgtgagtctgtttgcaggatagcatctttttgaaggcatcatgcttgacaa Alignment from Exonerate_protein2genome TTACCTGACGGACATTGAGCGTATCGCCATGCCCTCTTTCGTGCCAACACAACAGGATGTGCTTCGTGTTAGAGTGCCCACCACTGGCATCATAGAATATCCATTCGACCTGGAAAACATCATCTTCCG tgtgccttcttcaaatagagccttggcataatttctgtttttcctctcagTTACCTAACAGACATTGAGCGTAATGCCATGCCCTCTTTTGTGCCCACACAACAGGATGTTCTCCGGGTTCGTGTACCTACCAGTGGCATTATAGAATATCCATCTGACTTGGAAAACATTATATATCGgtgagtctgtttgcaggatagcatctttttgaaggcatcatgcttgacaa Alignment from Exonerate_coding2genome TTACCTGACGGACATTGAGCGTATCGCCATGCCCTCTTTCGTGCCAACACAACAGGATGTGCTTCGTGTTAGAGTGCCCACCACTGGCATCATAGAATATCCATTCGACCTGGAAAACATCATCTTCCG tgtgccttcttcaaatagagccttggcataatttctgtttttcctctcagTTACCTAACAGACATTGAGCGTAATGCCATGCCCTCTTTTGTGCCCACACAACAGGATGTTCTCCGGGTTCGTGTACCTACCAGTGGCATTATAGAATATCCATCTGACTTGGAAAACATTATATATCGgtgagtctgtttgcaggatagcatctttttgaaggcatcatgcttgacaa Alignment from GeneWise TTACCTGACGGACATTGAGCGTATCGCCATGCCCTCTTTCGTGCCAACACAACAGGATGTGCTTCGTGTTAGAGTGCCCACCACTGGCATCATAGAATATCCATTCGACCTGGAAAACATCATCTTCCG tgtgccttcttcaaatagagccttggcataatttctgtttttcctctcagTTACCTAACAGACATTGAGCGTAATGCCATGCCCTCTTTTGTGCCCACACAACAGGATGTTCTCCGGGTTCGTGTACCTACCAGTGGCATTATAGAATATCCATCTGACTTGGAAAACATTATATATCGgtgagtctgtttgcaggatagcatctttttgaaggcatcatgcttgacaa #### Gnaq_ID4030_5 --> 1 - 0 Original Alignment aATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGACAATGAG tcatttaacatccaatagctgtgtttggctcacccttgccctccctgcagaATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGATAATGAGgtaagtttgatcaatgattgagtacttcaccaattgagcacttttttgtg Alignment from CESAR aATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGACAATGAG tcatttaacatccaatagctgtgtttggctcacccttgccctccctgcagaATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGATAATGAGgtaagtttgatcaatgattgagtacttcaccaattgagcacttttttgtg Alignment from Spaln_aa2Genome AATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGACAATGAG tcatttaacatccaatagctgtgtttggctcacccttgccctccctgcagAATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGATAATGAGgtaagtttgatcaatgattgagtacttcaccaattgagcacttttttgtg Alignment from Spaln_nt2Genome AATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGACAATGAG tcatttaacatccaatagctgtgtttggctcacccttgccctccctgcagAATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGATAATGAGgtaagtttgatcaatgattgagtacttcaccaattgagcacttttttgtg Alignment from Pairagon AATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGACAATGAG tcatttaacatccaatagctgtgtttggctcacccttgccctccctgcagAATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGATAATGAGgtaagtttgatcaatgattgagtacttcaccaattgagcacttttttgtg Alignment from Exonerate_protein2genome AATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGACAATGAG tcatttaacatccaatagctgtgtttggctcacccttgccctccctgcagAATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGATAATGAGgtaagtttgatcaatgattgagtacttcaccaattgagcacttttttgtg Alignment from Exonerate_coding2genome AATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGACAATGAG tcatttaacatccaatagctgtgtttggctcacccttgccctccctgcagAATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGATAATGAGgtaagtttgatcaatgattgagtacttcaccaattgagcacttttttgtg Alignment from GeneWise AATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGACAATGAG tcatttaacatccaatagctgtgtttggctcacccttgccctccctgcagAATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGATAATGAGgtaagtttgatcaatgattgagtacttcaccaattgagcacttttttgtg #### Gnaq_ID4032_6 --> 0 - 1 Original Alignment AACCGCATGGAGGAGAGCAAAGCACTCTTTAGAACAATTATCACCTACCCCTGGTTCCAGAACTCCTCTGTGATTCTGTTCTTAAACAAGAAAGATCTTCTAGAGGAGAAAATCATGTATTCCCACCTAGTCGACTACTTCCCAGAATATGATg ctgctaccatcctatagctcaacctcaaagcaaacagtgtcttctttcagAATCACATGAAGGAAAGCAAAGCACTGTTTAGGACTATCATCACCTACCCCTGGCTCCCAAACTCCTCTGTGATTCTATTCTTGAACAAA---GATCTTTTAGAGGAAAAAATGATGTACATGCATGTAATTGACTACTTTCCAGTATATGATggtatgtagccgtgaaagcccagctcacaactggtcaggatgtcactttgg Alignment from CESAR AACCGCATGGAGGAGAGCAAAGCACTCTTTAGAACAATTATCACCTACCCCTGGTTCCAGAACTCCTCTGTGATTCTGTTCTTAAACAAGAAAGATCTTCTAGAGGAGAAAATCATGTATTCCCACCTAGTCGACTACTTCCCAGAATATGATg ctgctaccatcctatagctcaacctcaaagcaaacagtgtcttctttcagAATCACATGAAGGAAAGCAAAGCACTGTTTAGGACTATCATCACCTACCCCTGGCTCCCAAACTCCTCTGTGATTCTATTCTTGAAC---AAAGATCTTTTAGAGGAAAAAATGATGTACATGCATGTAATTGACTACTTTCCAGTATATGATggtatgtagccgtgaaagcccagctcacaactggtcaggatgtcactttgg Alignment from Spaln_aa2Genome AACCGCATGGAGGAGAGCAAAGCACTCTTTAGAACAATTATCACCTACCCCTGGTTCCAGAACTCCTCTGTGATTCTGTTCTTAAACAAGAAAGATCTTCTAGAGGAGAAAATCATGTATTCCCACCTAGTCGACTACTTCCCAGAATATGATG ctgctaccatcctatagctcaacctcaaagcaaacagtgtcttctttcagAATCACATGAAGGAAAGCAAAGCACTGTTTAGGACTATCATCACCTACCCCTGGCTCCCAAACTCCTCTGTGATTCTATTCTTGAACAAA---GATCTTTTAGAGGAAAAAATGATGTACATGCATGTAATTGACTACTTTCCAGTATATGATGgtatgtagccgtgaaagcccagctcacaactggtcaggatgtcactttgg Alignment from Spaln_nt2Genome AACCGCATGGAGGAGAGCAAAGCACTCTTTAGAACAATTATCACCTACCCCTGGTTCCAGAACTCCTCTGTGATTCTGTTCTTAAACAAGAAAGATCTTCTAGAGGAGAAAATCATGTATTCCCACCTAGTCGACTACTTCCCAGAATATGATG ctgctaccatcctatagctcaacctcaaagcaaacagtgtcttctttcagAATCACATGAAGGAAAGCAAAGCACTGTTTAGGACTATCATCACCTACCCCTGGCTCCCAAACTCCTCTGTGATTCTATTCTTGAACAA---AGATCTTTTAGAGGAAAAAATGATGTACATGCATGTAATTGACTACTTTCCAGTATATGATGgtatgtagccgtgaaagcccagctcacaactggtcaggatgtcactttgg Alignment from Pairagon AACCGCATGGAGGAGAGCAAAGCACTCTTTAGAACAATTATCACCTACCCCTGGTTCCAGAACTCCTCTGTGATTCTGTTCTTAAACAAGAAAGATCTTCTAGAGGAGAAAATCATGTATTCCCACCTAGTCGACTACTTCCCAGAATATGATG ctgctaccatcctatagctcaacctcaaagcaaacagtgtcttctttcagAATCACATGAAGGAAAGCAAAGCACTGTTTAGGACTATCATCACCTACCCCTGGCTCCCAAACTCCTCTGTGATTCTATTCTTGAAC---AAAGATCTTTTAGAGGAAAAAATGATGTACATGCATGTAATTGACTACTTTCCAGTATATGATGgtatgtagccgtgaaagcccagctcacaactggtcaggatgtcactttgg Alignment from Exonerate_protein2genome AACCGCATGGAGGAGAGCAAAGCACTCTTTAGAACAATTATCACCTACCCCTGGTTCCAGAACTCCTCTGTGATTCTGTTCTTAAACAAGAAAGATCTTCTAGAGGAGAAAATCATGTATTCCCACCTAGTCGACTACTTCCCAGAATATGATG ctgctaccatcctatagctcaacctcaaagcaaacagtgtcttctttcagAATCACATGAAGGAAAGCAAAGCACTGTTTAGGACTATCATCACCTACCCCTGGCTCCCAAACTCCTCTGTGATTCTATTCTTGAAC---AAAGATCTTTTAGAGGAAAAAATGATGTACATGCATGTAATTGACTACTTTCCAGTATATGATGgtatgtagccgtgaaagcccagctcacaactggtcaggatgtcactttgg Alignment from Exonerate_coding2genome AACCGCATGGAGGAGAGCAAAGCACTCTTTAGAACAATTATCACCTACCCCTGGTTCCAGAACTCCTCTGTGATTCTGTTCTTAAACAAGAAAGATCTTCTAGAGGAGAAAATCATGTATTCCCACCTAGTCGACTACTTCCCAGAATATGATG ctgctaccatcctatagctcaacctcaaagcaaacagtgtcttctttcagAATCACATGAAGGAAAGCAAAGCACTGTTTAGGACTATCATCACCTACCCCTGGCTCCCAAACTCCTCTGTGATTCTATTCTTGAAC---AAAGATCTTTTAGAGGAAAAAATGATGTACATGCATGTAATTGACTACTTTCCAGTATATGATGgtatgtagccgtgaaagcccagctcacaactggtcaggatgtcactttgg Alignment from GeneWise AACCGCATGGAGGAGAGCAAAGCACTCTTTAGAACAATTATCACCTACCCCTGGTTCCAGAACTCCTCTGTGATTCTGTTCTTAAACAAGAAAGATCTTCTAGAGGAGAAAATCATGTATTCCCACCTAGTCGACTACTTCCCAGAATATGATG ctgctaccatcctatagctcaacctcaaagcaaacagtgtcttctttcagAATCACATGAAGGAAAGCAAAGCACTGTTTAGGACTATCATCACCTACCCCTGGCTCCCAAACTCCTCTGTGATTCTATTCTTGAAC---AAAGATCTTTTAGAGGAAAAAATGATGTACATGCATGTAATTGACTACTTTCCAGTATATGATGgtatgtagccgtgaaagcccagctcacaactggtcaggatgtcactttgg #### Got1_ID8749_6 --> 0 - 1 Original Alignment CGCCGTTTTCTGTTCCCCTTCTTTGACTCAGCCTATCAGGGCTTTGCATCTGGAGACCTAGAGAAAGATGCGTGGGCTATTCGCTATTTTGTGTCTGAAGGCTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAAGAACTTCGGGCTCTACa ttggaaagccctgtcacatctggactgcagccccctttgtctgtctcgagTGCCGTTTTTTGTTCCCATACTTTGACTCAGCCTACCAGGGTTTTGCTGCTGCAGACTTGGAGAAAGATGCATGGGCAGTTCATTTTTTTGAATCTGAAGACTTCCAGCTTTTCTGG------TCCTTTACCAGGAACTCTGGGCTATATagtaagaactatggagtgtgtcaatattgtacctccccagggactgtgttg Alignment from CESAR CGCCGTTTTCTGTTCCCCTTCTTTGACTCAGCCTATCAGGGCTTTGCATCTGGAGACCTAGAGAAAGATGCGTGGGCTATTCGCTATTTTGTGTCTGAAGGCTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAAGAACTTCGGGCTCTACa ttggaaagccctgtcacatctggactgcagccccctttgtctgtctcgagTGCCGTTTTTTGTTCCCATACTTTGACTCAGCCTACCAGGGTTTTGCTGCTGCAGACTTGGAGAAAGATGCATGGGCAGTTCATTTTTTTGAATCTGAAGACTTCCAGCTTTTCTGG------TCCTTTACCAGGAACTCTGGGCTATATagtaagaactatggagtgtgtcaatattgtacctccccagggactgtgttg Alignment from Spaln_aa2Genome CGCCGTTTTCTGTTCCCCTTCTTTGACTCAGCCTATCAGGGCTTTGCATCTGGAGACCTAGAGAAAGATGCGTGGGCTATTCGCTATTTTGTGTCTGAAGGCTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAAGAACTTCGGGCTCTACA ttggaaagccctgtcacatctggactgcagccccctttgtctgtctcgagTGCCGTTTTTTGTTCCCATACTTTGACTCAGCCTACCAGGGTTTTGCTGCTGCAGACTTGGAGAAAGATGCATGGGCAGTTCATTTTTTTGAATCTGAAGACTTCCAGCTTTTCTGG------TCCTTTACCAGGAACTCTGGGCTATATAgtaagaactatggagtgtgtcaatattgtacctccccagggactgtgttg Alignment from Spaln_nt2Genome CGCCGTTTTCTGTTCCCCTTCTTTGACTCAGCCTATCAGGGCTTTGCATCTGGAGACCTAGAGAAAGATGCGTGGGCTATTCGCTATTTTGTGTCTGAAGGCTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAAGAACTTCGGGCTCTACA ttggaaagccctgtcacatctggactgcagccccctttgtctgtctcgagTGCCGTTTTTTGTTCCCATACTTTGACTCAGCCTACCAGGGTTTTGCTGCTGCAGACTTGGAGAAAGATGCATGGGCAGTTCATTTTTTTGAATCTGAAGACTTCCAGCTTTTCTG------GTCCTTTACCAGGAACTCTGGGCTATATAgtaagaactatggagtgtgtcaatattgtacctccccagggactgtgttg Alignment from Pairagon CGCCGTTTTCTGTTCCCCTTCTTTGACTCAGCCTATCAGGGCTTTGCATCTGGAGACCTAGAGAAAGATGCGTGGGCTATTCGCTATTTTGTGTCTGAAGGCTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAAGAACTTCGGGCTCTACA ttggaaagccctgtcacatctggactgcagccccctttgtctgtctcgagTGCCGTTTTTTGTTCCCATACTTTGACTCAGCCTACCAGGGTTTTGCTGCTGCAGACTTGGAGAAAGATGCATGGGCAGTTCATTTTTTTGAATCTGAAGACTTCCAGCTTTTCTG------GTCCTTTACCAGGAACTCTGGGCTATATAgtaagaactatggagtgtgtcaatattgtacctccccagggactgtgttg Alignment from Exonerate_protein2genome CGCCGTTTTCTGTTCCCCTTCTTTGACTCAGCCTATCAGGGCTTTGCATCTGGAGACCTAGAGAAAGATGCGTGGGCTATTCGCTATTTTGTGTCTGAAGGCTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAAGAACTTCGGGCTCTACA ttggaaagccctgtcacatctggactgcagccccctttgtctgtctcgagTGCCGTTTTTTGTTCCCATACTTTGACTCAGCCTACCAGGGTTTTGCTGCTGCAGACTTGGAGAAAGATGCATGGGCAGTTCATTTTTTTGAATCTGAAGACTTCCAGCTTTTC------TGGTCCTTTACCAGGAACTCTGGGCTATATAgtaagaactatggagtgtgtcaatattgtacctccccagggactgtgttg Alignment from Exonerate_coding2genome CGCCGTTTTCTGTTCCCCTTCTTTGACTCAGCCTATCAGGGCTTTGCATCTGGAGACCTAGAGAAAGATGCGTGGGCTATTCGCTATTTTGTGTCTGAAGGCTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAAGAACTTCGGGCTCTACA ttggaaagccctgtcacatctggactgcagccccctttgtctgtctcgagTGCCGTTTTTTGTTCCCATACTTTGACTCAGCCTACCAGGGTTTTGCTGCTGCAGACTTGGAGAAAGATGCATGGGCAGTTCATTTTTTTGAATCTGAAGACTTCCAGCTTTTC------TGGTCCTTTACCAGGAACTCTGGGCTATATAgtaagaactatggagtgtgtcaatattgtacctccccagggactgtgttg Alignment from GeneWise CGCCGTTTTCTGTTCCCCTTCTTTGACTCAGCCTATCAGGGCTTTGCATCTGGAGACCTAGAGAAAGATGCGTGGGCTATTCGCTATTTTGTGTCTGAAGGCTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAAGAACTTCGGGCTCTACA ttggaaagccctgtcacatctggactgcagccccctttgtctgtctcgagTGCCGTTTTTTGTTCCCATACTTTGACTCAGCCTACCAGGGTTTTGCTGCTGCAGACTTGGAGAAAGATGCATGGGCAGTTCATTTTTTTGAATCTGAAGACTTCCAGCTTTTC------TGGTCCTTTACCAGGAACTCTGGGCTATATAgtaagaactatggagtgtgtcaatattgtacctccccagggactgtgttg #### Got1_ID8751_4 --> 2 - 0 Original Alignment agAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttagttatatgtccattcctaatggatatttacagactgtattttcacagagAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGATATTCGACCCTATTGCTACTGGGATGCTGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtaagtgagacagaagcacagagaactctgtttagtcgctaggaggaata Alignment from CESAR agAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttagttatatgtccattcctaatggatatttacagactgtattttcacagagAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGATATTCGACCCTATTGCTACTGGGATGCTGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtaagtgagacagaagcacagagaactctgtttagtcgctaggaggaata Alignment from Spaln_aa2Genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttagttatatgtccattcctaatggatatttacagactgtattttcacagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGATATTCGACCCTATTGCTACTGGGATGCTGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtaagtgagacagaagcacagagaactctgtttagtcgctaggaggaata Alignment from Spaln_nt2Genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttagttatatgtccattcctaatggatatttacagactgtattttcacagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGATATTCGACCCTATTGCTACTGGGATGCTGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtaagtgagacagaagcacagagaactctgtttagtcgctaggaggaata Alignment from Pairagon AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttagttatatgtccattcctaatggatatttacagactgtattttcacagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGATATTCGACCCTATTGCTACTGGGATGCTGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtaagtgagacagaagcacagagaactctgtttagtcgctaggaggaata Alignment from Exonerate_protein2genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttagttatatgtccattcctaatggatatttacagactgtattttcacagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGATATTCGACCCTATTGCTACTGGGATGCTGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtaagtgagacagaagcacagagaactctgtttagtcgctaggaggaata Alignment from Exonerate_coding2genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttagttatatgtccattcctaatggatatttacagactgtattttcacagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGATATTCGACCCTATTGCTACTGGGATGCTGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtaagtgagacagaagcacagagaactctgtttagtcgctaggaggaata Alignment from GeneWise AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttagttatatgtccattcctaatggatatttacagactgtattttcacagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGATATTCGACCCTATTGCTACTGGGATGCTGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtaagtgagacagaagcacagagaactctgtttagtcgctaggaggaata #### Got1_ID8752_3 --> 0 - 1 Original Alignment GTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGCGCTCTTCGGATTGGAGCTGACTTCTTAGGGCGATGGTACAATGGTACAGATAACAAGAACACACCAATCTACGTATCATCACCAACCTGGg gctaatactctcaaaagaaaagaatagtctgttgtgttgtttatgcctagGTTGGAGGTGTACAGTCCTTGGGGGGGTCAGGTGCCCTTAGGATTGGATCTGATTTTTTT------TGGCATAATGGTACAGATAACAAGAATACAACGATCTACATATCTTCACCCACTTGGggtaagagatgcgctctcgcttaagaggccatctttctcaaaaaccagggg Alignment from CESAR GTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGCGCTCTTCGGATTGGAGCTGACTTCTTAGGGCGATGGTACAATGGTACAGATAACAAGAACACACCAATCTACGTATCATCACCAACCTGGg gctaatactctcaaaagaaaagaatagtctgttgtgttgtttatgcctagGTTGGAGGTGTACAGTCCTTGGGGGGGTCAGGTGCCCTTAGGATTGGATCTGATTTTTTT------TGGCATAATGGTACAGATAACAAGAATACAACGATCTACATATCTTCACCCACTTGGggtaagagatgcgctctcgcttaagaggccatctttctcaaaaaccagggg Alignment from Spaln_aa2Genome GTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGCGCTCTTCGGATTGGAGCTGACTTCTTAGGGCGATGGTACAATGGTACAGATAACAAGAACACACCAATCTACGTATCATCACCAACCTGGG gctaatactctcaaaagaaaagaatagtctgttgtgttgtttatgcctagGTTGGAGGTGTACAGTCCTTGGGGGGGTCAGGTGCCCTTAGGATTGGATCTGATTTTTTT------TGGCATAATGGTACAGATAACAAGAATACAACGATCTACATATCTTCACCCACTTGGGgtaagagatgcgctctcgcttaagaggccatctttctcaaaaaccagggg Alignment from Spaln_nt2Genome GTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGCGCTCTTCGGATTGGAGCTGACTTCTTAGGGCGATGGTACAATGGTACAGATAACAAGAACACACCAATCTACGTATCATCACCAACCTGGG gctaatactctcaaaagaaaagaatagtctgttgtgttgtttatgcctagGTTGGAGGTGTACAGTCCTTGGGGGGGTCAGGTGCCCTTAGGATTGGATCTGATTTTTT------TTGGCATAATGGTACAGATAACAAGAATACAACGATCTACATATCTTCACCCACTTGGGgtaagagatgcgctctcgcttaagaggccatctttctcaaaaaccagggg Alignment from Pairagon GTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGCGCTCTTCGGATTGGAGCTGACTTCTTAGGGCGATGGTACAATGGTACAGATAACAAGAACACACCAATCTACGTATCATCACCAACCTGGG gctaatactctcaaaagaaaagaatagtctgttgtgttgtttatgcctagGTTGGAGGTGTACAGTCCTTGGGGGGGTCAGGTGCCCTTAGGATTGGATCTGATTTTTT------TTGGCATAATGGTACAGATAACAAGAATACAACGATCTACATATCTTCACCCACTTGGGgtaagagatgcgctctcgcttaagaggccatctttctcaaaaaccagggg Alignment from Exonerate_protein2genome GTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGCGCTCTTCGGATTGGAGCTGACTTCTTAGGGCGATGGTACAATGGTACAGATAACAAGAACACACCAATCTACGTATCATCACCAACCTGGG gctaatactctcaaaagaaaagaatagtctgttgtgttgtttatgcctagGTTGGAGGTGTACAGTCCTTGGGGGGGTCAGGTGCCCTTAGGATTGGATCTGATTTTTTT------TGGCATAATGGTACAGATAACAAGAATACAACGATCTACATATCTTCACCCACTTGGGgtaagagatgcgctctcgcttaagaggccatctttctcaaaaaccagggg Alignment from Exonerate_coding2genome GTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGCGCTCTTCGGATTGGAGCTGACTTCTTAGGGCGATGGTACAATGGTACAGATAACAAGAACACACCAATCTACGTATCATCACCAACCTGGG gctaatactctcaaaagaaaagaatagtctgttgtgttgtttatgcctagGTTGGAGGTGTACAGTCCTTGGGGGGGTCAGGTGCCCTTAGGATTGGATCTGATTTTTTT------TGGCATAATGGTACAGATAACAAGAATACAACGATCTACATATCTTCACCCACTTGGGgtaagagatgcgctctcgcttaagaggccatctttctcaaaaaccagggg Alignment from GeneWise GTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGCGCTCTTCGGATTGGAGCTGACTTCTTAGGGCGATGGTACAATGGTACAGATAACAAGAACACACCAATCTACGTATCATCACCAACCTGGG gctaatactctcaaaagaaaagaatagtctgttgtgttgtttatgcctagGTTGGAGGTGTACAGTCCTTGGGGGGGTCAGGTGCCCTTAGGATTGGATCTGATTTTTTT------TGGCATAATGGTACAGATAACAAGAATACAACGATCTACATATCTTCACCCACTTGGGgtaagagatgcgctctcgcttaagaggccatctttctcaaaaaccagggg #### Gpam_ID11533_16 --> 0 - 0 Original Alignment CCCTGCCAGACTTTTTACCAAGTTTGTCATGAGACAGTTGGCAAGTTCATCCAGTATGGCATTCTCACAGTGGCAGAG tcccaatcaccctgtatattgcctgccttcagatctccttattcctgcagCCCTGCCAAACCTTTTACAAAGTCTGTCATGAGTCAGTTGGCAAGTTCATCCAGTATGGCATTCTTACAGTGTCTGAGgtgagggaaatggacagttggactggttttgacgtcttcatttacttcaa Alignment from CESAR CCCTGCCAGACTTTTTACCAAGTTTGTCATGAGACAGTTGGCAAGTTCATCCAGTATGGCATTCTCACAGTGGCAGAG tcccaatcaccctgtatattgcctgccttcagatctccttattcctgcagCCCTGCCAAACCTTTTACAAAGTCTGTCATGAGTCAGTTGGCAAGTTCATCCAGTATGGCATTCTTACAGTGTCTGAGgtgagggaaatggacagttggactggttttgacgtcttcatttacttcaa Alignment from Spaln_aa2Genome CCCTGCCAGACTTTTTACCAAGTTTGTCATGAGACAGTTGGCAAGTTCATCCAGTATGGCATTCTCACAGTGGCAGAG tcccaatcaccctgtatattgcctgccttcagatctccttattcctgcagCCCTGCCAAACCTTTTACAAAGTCTGTCATGAGTCAGTTGGCAAGTTCATCCAGTATGGCATTCTTACAGTGTCTGAGgtgagggaaatggacagttggactggttttgacgtcttcatttacttcaa Alignment from Spaln_nt2Genome CCCTGCCAGACTTTTTACCAAGTTTGTCATGAGACAGTTGGCAAGTTCATCCAGTATGGCATTCTCACAGTGGCAGAG tcccaatcaccctgtatattgcctgccttcagatctccttattcctgcagCCCTGCCAAACCTTTTACAAAGTCTGTCATGAGTCAGTTGGCAAGTTCATCCAGTATGGCATTCTTACAGTGTCTGAGgtgagggaaatggacagttggactggttttgacgtcttcatttacttcaa Alignment from Pairagon CCCTGCCAGACTTTTTACCAAGTTTGTCATGAGACAGTTGGCAAGTTCATCCAGTATGGCATTCTCACAGTGGCAGAG tcccaatcaccctgtatattgcctgccttcagatctccttattcctgcagCCCTGCCAAACCTTTTACAAAGTCTGTCATGAGTCAGTTGGCAAGTTCATCCAGTATGGCATTCTTACAGTGTCTGAGgtgagggaaatggacagttggactggttttgacgtcttcatttacttcaa Alignment from Exonerate_protein2genome CCCTGCCAGACTTTTTACCAAGTTTGTCATGAGACAGTTGGCAAGTTCATCCAGTATGGCATTCTCACAGTGGCAGAG tcccaatcaccctgtatattgcctgccttcagatctccttattcctgcagCCCTGCCAAACCTTTTACAAAGTCTGTCATGAGTCAGTTGGCAAGTTCATCCAGTATGGCATTCTTACAGTGTCTGAGgtgagggaaatggacagttggactggttttgacgtcttcatttacttcaa Alignment from Exonerate_coding2genome tcccaatcaccctgtatattgcctgccttcagatctccttattcctgcagccctgccaaaccttttacaaagtctgtcatgagtcagttggcaagttcatccagtatggcattcttacagtgtctgaggtgagggaaatggacagttggactggttttgacgtcttcatttacttcaa Alignment from GeneWise CCCTGCCAGACTTTTTACCAAGTTTGTCATGAGACAGTTGGCAAGTTCATCCAGTATGGCATTCTCACAGTGGCAGAG tcccaatcaccctgtatattgcctgccttcagatctccttattcctgcagCCCTGCCAAACCTTTTACAAAGTCTGTCATGAGTCAGTTGGCAAGTTCATCCAGTATGGCATTCTTACAGTGTCTGAGgtgagggaaatggacagttggactggttttgacgtcttcatttacttcaa #### Gpam_ID11536_13 --> 2 - 0 Original Alignment ccGCCAGCAAGTCCTGCGCTATCATGTCCACCCACATTGTGGCCTGTCTGCTCCTCTACAGACACAGGCAG gaaagaaaggcgtaatcttgtcttgtataggtgcggtctcttgtctgcagcaGCCAGCAAGTCTGGGGCTATCATGTCAACTCACATCATCGCCTGTCTTCTCCTATACAAACACAGGCAGgttagtcttacaatcaattggtagataagagatggccacaatgttcatta Alignment from CESAR ccGCCAGCAAGTCCTGCGCTATCATGTCCACCCACATTGTGGCCTGTCTGCTCCTCTACAGACACAGGCAG gaaagaaaggcgtaatcttgtcttgtataggtgcggtctcttgtctgcagcaGCCAGCAAGTCTGGGGCTATCATGTCAACTCACATCATCGCCTGTCTTCTCCTATACAAACACAGGCAGgttagtcttacaatcaattggtagataagagatggccacaatgttcatta Alignment from Spaln_aa2Genome CCGCCAGCAAGTCCTGCGCTATCATGTCCACCCACATTGTGGCCTGTCTGCTCCTCTACAGACACAGGCAG gaaagaaaggcgtaatcttgtcttgtataggtgcggtctcttgtctgcagCAGCCAGCAAGTCTGGGGCTATCATGTCAACTCACATCATCGCCTGTCTTCTCCTATACAAACACAGGCAGgttagtcttacaatcaattggtagataagagatggccacaatgttcatta Alignment from Spaln_nt2Genome CCGCCAGCAAGTCCTGCGCTATCATGTCCACCCACATTGTGGCCTGTCTGCTCCTCTACAGACACAGGCAG gaaagaaaggcgtaatcttgtcttgtataggtgcggtctcttgtctgcagCAGCCAGCAAGTCTGGGGCTATCATGTCAACTCACATCATCGCCTGTCTTCTCCTATACAAACACAGGCAGgttagtcttacaatcaattggtagataagagatggccacaatgttcatta Alignment from Pairagon CCGCCAGCAAGTCCTGCGCTATCATGTCCACCCACATTGTGGCCTGTCTGCTCCTCTACAGACACAGGCAG gaaagaaaggcgtaatcttgtcttgtataggtgcggtctcttgtctgcagCAGCCAGCAAGTCTGGGGCTATCATGTCAACTCACATCATCGCCTGTCTTCTCCTATACAAACACAGGCAGgttagtcttacaatcaattggtagataagagatggccacaatgttcatta Alignment from Exonerate_protein2genome CCGCCAGCAAGTCCTGCGCTATCATGTCCACCCACATTGTGGCCTGTCTGCTCCTCTACAGACACAGGCAG gaaagaaaggcgtaatcttgtcttgtataggtgcggtctcttgtctgcagCAGCCAGCAAGTCTGGGGCTATCATGTCAACTCACATCATCGCCTGTCTTCTCCTATACAAACACAGGCAGgttagtcttacaatcaattggtagataagagatggccacaatgttcatta Alignment from Exonerate_coding2genome gaaagaaaggcgtaatcttgtcttgtataggtgcggtctcttgtctgcagcagccagcaagtctggggctatcatgtcaactcacatcatcgcctgtcttctcctatacaaacacaggcaggttagtcttacaatcaattggtagataagagatggccacaatgttcatta Alignment from GeneWise CCGCCAGCAAGTCCTGCGCTATCATGTCCACCCACATTGTGGCCTGTCTGCTCCTCTACAGACACAGGCAG gaaagaaaggcgtaatcttgtcttgtataggtgcggtctcttgtctgcagCAGCCAGCAAGTCTGGGGCTATCATGTCAACTCACATCATCGCCTGTCTTCTCCTATACAAACACAGGCAGgttagtcttacaatcaattggtagataagagatggccacaatgttcatta #### Gpam_ID11539_10 --> 0 - 0 Original Alignment GGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGCGTTATCAGAATGCTGCGGAAAAACTACGGCTACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTGAAG tagggatgtgaacatccagaagtaaatgacaccctcatggaatgccacagGGCAAGCCCAAGAAGAATGAGAGCCTCTGGAGTGTAGCTAGAGGTGTTGTCAGAATGCTGCGTAAAAACTATGGTTATGTCAGAGTGGATTTTGCACAGCCATTTTCACTGAAAgtctggatatacacaaaggtgcagactcaaacccagagcttgttttttta Alignment from CESAR GGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGCGTTATCAGAATGCTGCGGAAAAACTACGGCTACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTGAAG tagggatgtgaacatccagaagtaaatgacaccctcatggaatgccacagGGCAAGCCCAAGAAGAATGAGAGCCTCTGGAGTGTAGCTAGAGGTGTTGTCAGAATGCTGCGTAAAAACTATGGTTATGTCAGAGTGGATTTTGCACAGCCATTTTCACTGAAAgtctggatatacacaaaggtgcagactcaaacccagagcttgttttttta Alignment from Spaln_aa2Genome GGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGCGTTATCAGAATGCTGCGGAAAAACTACGGCTACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTGAAG tagggatgtgaacatccagaagtaaatgacaccctcatggaatgccacagGGCAAGCCCAAGAAGAATGAGAGCCTCTGGAGTGTAGCTAGAGGTGTTGTCAGAATGCTGCGTAAAAACTATGGTTATGTCAGAGTGGATTTTGCACAGCCATTTTCACTGAAAgtctggatatacacaaaggtgcagactcaaacccagagcttgttttttta Alignment from Spaln_nt2Genome GGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGCGTTATCAGAATGCTGCGGAAAAACTACGGCTACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTGAAG tagggatgtgaacatccagaagtaaatgacaccctcatggaatgccacagGGCAAGCCCAAGAAGAATGAGAGCCTCTGGAGTGTAGCTAGAGGTGTTGTCAGAATGCTGCGTAAAAACTATGGTTATGTCAGAGTGGATTTTGCACAGCCATTTTCACTGAAAgtctggatatacacaaaggtgcagactcaaacccagagcttgttttttta Alignment from Pairagon GGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGCGTTATCAGAATGCTGCGGAAAAACTACGGCTACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTGAAG tagggatgtgaacatccagaagtaaatgacaccctcatggaatgccacagGGCAAGCCCAAGAAGAATGAGAGCCTCTGGAGTGTAGCTAGAGGTGTTGTCAGAATGCTGCGTAAAAACTATGGTTATGTCAGAGTGGATTTTGCACAGCCATTTTCACTGAAAgtctggatatacacaaaggtgcagactcaaacccagagcttgttttttta Alignment from Exonerate_protein2genome GGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGCGTTATCAGAATGCTGCGGAAAAACTACGGCTACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTGAAG tagggatgtgaacatccagaagtaaatgacaccctcatggaatgccacagGGCAAGCCCAAGAAGAATGAGAGCCTCTGGAGTGTAGCTAGAGGTGTTGTCAGAATGCTGCGTAAAAACTATGGTTATGTCAGAGTGGATTTTGCACAGCCATTTTCACTGAAAgtctggatatacacaaaggtgcagactcaaacccagagcttgttttttta Alignment from Exonerate_coding2genome GGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGCGTTATCAGAATGCTGCGGAAAAACTACGGCTACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTGAAG tagggatgtgaacatccagaagtaaatgacaccctcatggaatgccacagGGCAAGCCCAAGAAGAATGAGAGCCTCTGGAGTGTAGCTAGAGGTGTTGTCAGAATGCTGCGTAAAAACTATGGTTATGTCAGAGTGGATTTTGCACAGCCATTTTCACTGAAAgtctggatatacacaaaggtgcagactcaaacccagagcttgttttttta Alignment from GeneWise GGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGCGTTATCAGAATGCTGCGGAAAAACTACGGCTACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTGAAG tagggatgtgaacatccagaagtaaatgacaccctcatggaatgccacagGGCAAGCCCAAGAAGAATGAGAGCCTCTGGAGTGTAGCTAGAGGTGTTGTCAGAATGCTGCGTAAAAACTATGGTTATGTCAGAGTGGATTTTGCACAGCCATTTTCACTGAAAgtctggatatacacaaaggtgcagactcaaacccagagcttgttttttta #### Gpam_ID11542_7 --> 0 - 2 Original Alignment ACGAACCTGCCGCTCTTGTTTCTGCCGGTGCACAGATCCCACATTGACTACCTGTTGCTCACCTTCATCCTCTTTTGCCACAACATCAAGGCGCCGTACATCGCCTCGGGCAATAATCTCAACATCCCCGTCTTCag gtacttgcttacccctattacactctgccctctctgcctccttccagcagATAAACTTGCCACTCTTATTTCTGCTGGTGCACAGATCCCACATGGACTACCTCTTGCTTACTTTCATTCTTTTTTGCCACAACATCAAGGCACCATACATTGCCTCGGGCAATAATCTCAACATCCCTATCTTCaggtgaggtcatcccccttgtggagaacatagtaatgctaggctcagatgta Alignment from CESAR ACGAACCTGCCGCTCTTGTTTCTGCCGGTGCACAGATCCCACATTGACTACCTGTTGCTCACCTTCATCCTCTTTTGCCACAACATCAAGGCGCCGTACATCGCCTCGGGCAATAATCTCAACATCCCCGTCTTCag gtacttgcttacccctattacactctgccctctctgcctccttccagcagATAAACTTGCCACTCTTATTTCTGCTGGTGCACAGATCCCACATGGACTACCTCTTGCTTACTTTCATTCTTTTTTGCCACAACATCAAGGCACCATACATTGCCTCGGGCAATAATCTCAACATCCCTATCTTCaggtgaggtcatcccccttgtggagaacatagtaatgctaggctcagatgta Alignment from Spaln_aa2Genome ACGAACCTGCCGCTCTTGTTTCTGCCGGTGCACAGATCCCACATTGACTACCTGTTGCTCACCTTCATCCTCTTTTGCCACAACATCAAGGCGCCGTACATCGCCTCGGGCAATAATCTCAACATCCCCGTCTTCAG gtacttgcttacccctattacactctgccctctctgcctccttccagcagATAAACTTGCCACTCTTATTTCTGCTGGTGCACAGATCCCACATGGACTACCTCTTGCTTACTTTCATTCTTTTTTGCCACAACATCAAGGCACCATACATTGCCTCGGGCAATAATCTCAACATCCCTATCTTCAGgtgaggtcatcccccttgtggagaacatagtaatgctaggctcagatgta Alignment from Spaln_nt2Genome ACGAACCTGCCGCTCTTGTTTCTGCCGGTGCACAGATCCCACATTGACTACCTGTTGCTCACCTTCATCCTCTTTTGCCACAACATCAAGGCGCCGTACATCGCCTCGGGCAATAATCTCAACATCCCCGTCTTCAG gtacttgcttacccctattacactctgccctctctgcctccttccagcagATAAACTTGCCACTCTTATTTCTGCTGGTGCACAGATCCCACATGGACTACCTCTTGCTTACTTTCATTCTTTTTTGCCACAACATCAAGGCACCATACATTGCCTCGGGCAATAATCTCAACATCCCTATCTTCAGgtgaggtcatcccccttgtggagaacatagtaatgctaggctcagatgta Alignment from Pairagon ACGAACCTGCCGCTCTTGTTTCTGCCGGTGCACAGATCCCACATTGACTACCTGTTGCTCACCTTCATCCTCTTTTGCCACAACATCAAGGCGCCGTACATCGCCTCGGGCAATAATCTCAACATCCCCGTCTTCAG gtacttgcttacccctattacactctgccctctctgcctccttccagcagATAAACTTGCCACTCTTATTTCTGCTGGTGCACAGATCCCACATGGACTACCTCTTGCTTACTTTCATTCTTTTTTGCCACAACATCAAGGCACCATACATTGCCTCGGGCAATAATCTCAACATCCCTATCTTCAGgtgaggtcatcccccttgtggagaacatagtaatgctaggctcagatgta Alignment from Exonerate_protein2genome ACGAACCTGCCGCTCTTGTTTCTGCCGGTGCACAGATCCCACATTGACTACCTGTTGCTCACCTTCATCCTCTTTTGCCACAACATCAAGGCGCCGTACATCGCCTCGGGCAATAATCTCAACATCCCCGTCTTCAG gtacttgcttacccctattacactctgccctctctgcctccttccagcagATAAACTTGCCACTCTTATTTCTGCTGGTGCACAGATCCCACATGGACTACCTCTTGCTTACTTTCATTCTTTTTTGCCACAACATCAAGGCACCATACATTGCCTCGGGCAATAATCTCAACATCCCTATCTTCAGgtgaggtcatcccccttgtggagaacatagtaatgctaggctcagatgta Alignment from Exonerate_coding2genome ACGAACCTGCCGCTCTTGTTTCTGCCGGTGCACAGATCCCACATTGACTACCTGTTGCTCACCTTCATCCTCTTTTGCCACAACATCAAGGCGCCGTACATCGCCTCGGGCAATAATCTCAACATCCCCGTCTTCAG gtacttgcttacccctattacactctgccctctctgcctccttccagcagATAAACTTGCCACTCTTATTTCTGCTGGTGCACAGATCCCACATGGACTACCTCTTGCTTACTTTCATTCTTTTTTGCCACAACATCAAGGCACCATACATTGCCTCGGGCAATAATCTCAACATCCCTATCTTCAGgtgaggtcatcccccttgtggagaacatagtaatgctaggctcagatgta Alignment from GeneWise ACGAACCTGCCGCTCTTGTTTCTGCCGGTGCACAGATCCCACATTGACTACCTGTTGCTCACCTTCATCCTCTTTTGCCACAACATCAAGGCGCCGTACATCGCCTCGGGCAATAATCTCAACATCCCCGTCTTCAG gtacttgcttacccctattacactctgccctctctgcctccttccagcagATAAACTTGCCACTCTTATTTCTGCTGGTGCACAGATCCCACATGGACTACCTCTTGCTTACTTTCATTCTTTTTTGCCACAACATCAAGGCACCATACATTGCCTCGGGCAATAATCTCAACATCCCTATCTTCAGgtgaggtcatcccccttgtggagaacatagtaatgctaggctcagatgta #### Gpam_ID11547_2 --> 0 - 0 Original Alignment GTTGACTGTGGGTTCAAACCTACCTTCTTCAGATCTGCAACACTGAAATGGAAGGAGAGCCTTATGAGCCGGAAGAGGCCCTTCGTGGGAAGGTGCTGCTATTCCTGCACGCCACAGAGCTGG acagtgtggaagtggcacaagtttttgctggctttcatcttcttttacagGTTGACTGTGGGTTCAAACCTACCTTCTTTAAATCTGCAACACTCAAATGGAAGGAGAGCCTTATGAGTGAGCAGAGGCCCTTTGTAGGAAGGTGCTGCTATTCATGTACTCCACAGAGCTGGgtaatgggctttgctgtcatgggaggttttcgatcaaagttgtgacttca Alignment from CESAR GTTGACTGTGGGTTCAAACCTACCTTCTTCAGATCTGCAACACTGAAATGGAAGGAGAGCCTTATGAGCCGGAAGAGGCCCTTCGTGGGAAGGTGCTGCTATTCCTGCACGCCACAGAGCTGG acagtgtggaagtggcacaagtttttgctggctttcatcttcttttacagGTTGACTGTGGGTTCAAACCTACCTTCTTTAAATCTGCAACACTCAAATGGAAGGAGAGCCTTATGAGTGAGCAGAGGCCCTTTGTAGGAAGGTGCTGCTATTCATGTACTCCACAGAGCTGGgtaatgggctttgctgtcatgggaggttttcgatcaaagttgtgacttca Alignment from Spaln_aa2Genome GTTGACTGTGGGTTCAAACCTACCTTCTTCAGATCTGCAACACTGAAATGGAAGGAGAGCCTTATGAGCCGGAAGAGGCCCTTCGTGGGAAGGTGCTGCTATTCCTGCACGCCACAGAGCTGG acagtgtggaagtggcacaagtttttgctggctttcatcttcttttacagGTTGACTGTGGGTTCAAACCTACCTTCTTTAAATCTGCAACACTCAAATGGAAGGAGAGCCTTATGAGTGAGCAGAGGCCCTTTGTAGGAAGGTGCTGCTATTCATGTACTCCACAGAGCTGGgtaatgggctttgctgtcatgggaggttttcgatcaaagttgtgacttca Alignment from Spaln_nt2Genome GTTGACTGTGGGTTCAAACCTACCTTCTTCAGATCTGCAACACTGAAATGGAAGGAGAGCCTTATGAGCCGGAAGAGGCCCTTCGTGGGAAGGTGCTGCTATTCCTGCACGCCACAGAGCTGG acagtgtggaagtggcacaagtttttgctggctttcatcttcttttacagGTTGACTGTGGGTTCAAACCTACCTTCTTTAAATCTGCAACACTCAAATGGAAGGAGAGCCTTATGAGTGAGCAGAGGCCCTTTGTAGGAAGGTGCTGCTATTCATGTACTCCACAGAGCTGGgtaatgggctttgctgtcatgggaggttttcgatcaaagttgtgacttca Alignment from Pairagon GTTGACTGTGGGTTCAAACCTACCTTCTTCAGATCTGCAACACTGAAATGGAAGGAGAGCCTTATGAGCCGGAAGAGGCCCTTCGTGGGAAGGTGCTGCTATTCCTGCACGCCACAGAGCTGG acagtgtggaagtggcacaagtttttgctggctttcatcttcttttacagGTTGACTGTGGGTTCAAACCTACCTTCTTTAAATCTGCAACACTCAAATGGAAGGAGAGCCTTATGAGTGAGCAGAGGCCCTTTGTAGGAAGGTGCTGCTATTCATGTACTCCACAGAGCTGGgtaatgggctttgctgtcatgggaggttttcgatcaaagttgtgacttca Alignment from Exonerate_protein2genome GTTGACTGTGGGTTCAAACCTACCTTCTTCAGATCTGCAACACTGAAATGGAAGGAGAGCCTTATGAGCCGGAAGAGGCCCTTCGTGGGAAGGTGCTGCTATTCCTGCACGCCACAGAGCTGG acagtgtggaagtggcacaagtttttgctggctttcatcttcttttacagGTTGACTGTGGGTTCAAACCTACCTTCTTTAAATCTGCAACACTCAAATGGAAGGAGAGCCTTATGAGTGAGCAGAGGCCCTTTGTAGGAAGGTGCTGCTATTCATGTACTCCACAGAGCTGGgtaatgggctttgctgtcatgggaggttttcgatcaaagttgtgacttca Alignment from Exonerate_coding2genome GTTGACTGTGGGTTCAAACCTACCTTCTTCAGATCTGCAACACTGAAATGGAAGGAGAGCCTTATGAGCCGGAAGAGGCCCTTCGTGGGAAGGTGCTGCTATTCCTGCACGCCACAGAGCTGG acagtgtggaagtggcacaagtttttgctggctttcatcttcttttacagGTTGACTGTGGGTTCAAACCTACCTTCTTTAAATCTGCAACACTCAAATGGAAGGAGAGCCTTATGAGTGAGCAGAGGCCCTTTGTAGGAAGGTGCTGCTATTCATGTACTCCACAGAGCTGGgtaatgggctttgctgtcatgggaggttttcgatcaaagttgtgacttca Alignment from GeneWise GTTGACTGTGGGTTCAAACCTACCTTCTTCAGATCTGCAACACTGAAATGGAAGGAGAGCCTTATGAGCCGGAAGAGGCCCTTCGTGGGAAGGTGCTGCTATTCCTGCACGCCACAGAGCTGG acagtgtggaagtggcacaagtttttgctggctttcatcttcttttacagGTTGACTGTGGGTTCAAACCTACCTTCTTTAAATCTGCAACACTCAAATGGAAGGAGAGCCTTATGAGTGAGCAGAGGCCCTTTGTAGGAAGGTGCTGCTATTCATGTACTCCACAGAGCTGGgtaatgggctttgctgtcatgggaggttttcgatcaaagttgtgacttca #### Gpr137_ID1885_6 --> 0 - 2 Original Alignment AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCag aggttgcagcagaagggcggaacaccggtcggtattttttctgacatcagAGCACCAGTCAAATCCTTAATGGCCAAGTTTTTGGCTCCCGATCATACTTCTTTGACAGGGCTGGACACTGTGAGGATGATAGCTGCTCCGGGGAGCACAGCCAAAGCAAGAGCACTaggtaagtaccctgacctttaccccaataggagaggcctaagtagaggcata Alignment from CESAR AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCag aggttgcagcagaagggcggaacaccggtcggtattttttctgacatcagAGCACCAGTCAAATCCTTAATGGCCAAGTTTTTGGCTCCCGATCATACTTCTTTGACAGGGCTGGACACTGTGAGGATGATAGCTGCTCCGGGGAGCACAGCCAAAGCAAGAGCACTaggtaagtaccctgacctttaccccaataggagaggcctaagtagaggcata Alignment from Spaln_aa2Genome AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG aggttgcagcagaagggcggaacaccggtcggtattttttctgacatcagAGCACCAGTCAAATCCTTAATGGCCAAGTTTTTGGCTCCCGATCATACTTCTTTGACAGGGCTGGACACTGTGAGGATGATAGCTGCTCCGGGGAGCACAGCCAAAGCAAGAGCACTAGgtaagtaccctgacctttaccccaataggagaggcctaagtagaggcata Alignment from Spaln_nt2Genome AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG aggttgcagcagaagggcggaacaccggtcggtattttttctgacatcagAGCACCAGTCAAATCCTTAATGGCCAAGTTTTTGGCTCCCGATCATACTTCTTTGACAGGGCTGGACACTGTGAGGATGATAGCTGCTCCGGGGAGCACAGCCAAAGCAAGAGCACTAGgtaagtaccctgacctttaccccaataggagaggcctaagtagaggcata Alignment from Pairagon AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG aggttgcagcagaagggcggaacaccggtcggtattttttctgacatcagAGCACCAGTCAAATCCTTAATGGCCAAGTTTTTGGCTCCCGATCATACTTCTTTGACAGGGCTGGACACTGTGAGGATGATAGCTGCTCCGGGGAGCACAGCCAAAGCAAGAGCACTAGgtaagtaccctgacctttaccccaataggagaggcctaagtagaggcata Alignment from Exonerate_protein2genome AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG aggttgcagcagaagggcggaacaccggtcggtattttttctgacatcagAGCACCAGTCAAATCCTTAATGGCCAAGTTTTTGGCTCCCGATCATACTTCTTTGACAGGGCTGGACACTGTGAGGATGATAGCTGCTCCGGGGAGCACAGCCAAAGCAAGAGCACTAGgtaagtaccctgacctttaccccaataggagaggcctaagtagaggcata Alignment from Exonerate_coding2genome AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG aggttgcagcagaagggcggaacaccggtcggtattttttctgacatcagAGCACCAGTCAAATCCTTAATGGCCAAGTTTTTGGCTCCCGATCATACTTCTTTGACAGGGCTGGACACTGTGAGGATGATAGCTGCTCCGGGGAGCACAGCCAAAGCAAGAGCACTAGgtaagtaccctgacctttaccccaataggagaggcctaagtagaggcata Alignment from GeneWise AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG aggttgcagcagaagggcggaacaccggtcggtattttttctgacatcagAGCACCAGTCAAATCCTTAATGGCCAAGTTTTTGGCTCCCGATCATACTTCTTTGACAGGGCTGGACACTGTGAGGATGATAGCTGCTCCGGGGAGCACAGCCAAAGCAAGAGCACTAGgtaagtaccctgacctttaccccaataggagaggcctaagtagaggcata #### Gpr137_ID1886_5 --> 0 - 0 Original Alignment GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgcacattagtgtctgtattgacaaacacaggtgtcctttgtctttcagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTCGTGTTTGGTCTCATTCTC---TTTTGGCAATTGCTACCCACCACGTGGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtaggaaacccctgccacaacatgttccatgaaatagagggatcatgtca Alignment from CESAR GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgcacattagtgtctgtattgacaaacacaggtgtcctttgtctttcagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTCGTGTTTGGTCTCATTCTCTTT---TGGCAATTGCTACCCACCACGTGGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtaggaaacccctgccacaacatgttccatgaaatagagggatcatgtca Alignment from Spaln_aa2Genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgcacattagtgtctgtattgacaaacacaggtgtcctttgtctttcagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTCGTGTTTGGTCTCATTCTCTTT---TGGCAATTGCTACCCACCACGTGGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtaggaaacccctgccacaacatgttccatgaaatagagggatcatgtca Alignment from Spaln_nt2Genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgcacattagtgtctgtattgacaaacacaggtgtcctttgtctttcagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTCGTGTTTGGTCTCATTCTCT---TTTGGCAATTGCTACCCACCACGTGGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtaggaaacccctgccacaacatgttccatgaaatagagggatcatgtca Alignment from Pairagon GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgcacattagtgtctgtattgacaaacacaggtgtcctttgtctttcagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTCGTGTTTGGTCTCATTCTCT---TTTGGCAATTGCTACCCACCACGTGGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtaggaaacccctgccacaacatgttccatgaaatagagggatcatgtca Alignment from Exonerate_protein2genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgcacattagtgtctgtattgacaaacacaggtgtcctttgtctttcagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTCGTGTTTGGTCTCATTCTCTTT---TGGCAATTGCTACCCACCACGTGGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtaggaaacccctgccacaacatgttccatgaaatagagggatcatgtca Alignment from Exonerate_coding2genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgcacattagtgtctgtattgacaaacacaggtgtcctttgtctttcagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTCGTGTTTGGTCTCATTCTCTTT---TGGCAATTGCTACCCACCACGTGGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtaggaaacccctgccacaacatgttccatgaaatagagggatcatgtca Alignment from GeneWise GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgcacattagtgtctgtattgacaaacacaggtgtcctttgtctttcagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTCGTGTTTGGTCTCATTCTCTTT---TGGCAATTGCTACCCACCACGTGGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtaggaaacccctgccacaacatgttccatgaaatagagggatcatgtca #### Gpr137_ID1887_4 --> 0 - 0 Original Alignment GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG gtagacatacctagaaactcaggaccccctccccgccccgccccatacagGGGACAAGTGTATGTCAGGTGGCTGCAATAGGG---ACCATGATCTTGATTTATGCCAGCCGGGCCTGCTATAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGTCGGCTAGATGCCTTTGATTATGACTGGTATAATGTATCAGACCAGgtgagttacacattattccgggctgacaaggctgcacattagtgtctgta Alignment from CESAR GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG gtagacatacctagaaactcaggaccccctccccgccccgccccatacagGGGACAAGTGTATGTCAGGTGGCTGCAATAGGG---ACCATGATCTTGATTTATGCCAGCCGGGCCTGCTATAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGTCGGCTAGATGCCTTTGATTATGACTGGTATAATGTATCAGACCAGgtgagttacacattattccgggctgacaaggctgcacattagtgtctgta Alignment from Spaln_aa2Genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG gtagacatacctagaaactcaggaccccctccccgccccgccccatacagGGGACAAGTGTATGTCAGGTGGCTGCAATA---GGGACCATGATCTTGATTTATGCCAGCCGGGCCTGCTATAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGTCGGCTAGATGCCTTTGATTATGACTGGTATAATGTATCAGACCAGgtgagttacacattattccgggctgacaaggctgcacattagtgtctgta Alignment from Spaln_nt2Genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG gtagacatacctagaaactcaggaccccctccccgccccgccccatacagGGGACAAGTGTATGTCAGGTGGCTGCAATAGGG---ACCATGATCTTGATTTATGCCAGCCGGGCCTGCTATAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGTCGGCTAGATGCCTTTGATTATGACTGGTATAATGTATCAGACCAGgtgagttacacattattccgggctgacaaggctgcacattagtgtctgta Alignment from Pairagon GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG gtagacatacctagaaactcaggaccccctccccgccccgccccatacagGGGACAAGTGTATGTCAGGTGGCTGCAATAGGG---ACCATGATCTTGATTTATGCCAGCCGGGCCTGCTATAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGTCGGCTAGATGCCTTTGATTATGACTGGTATAATGTATCAGACCAGgtgagttacacattattccgggctgacaaggctgcacattagtgtctgta Alignment from Exonerate_protein2genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG gtagacatacctagaaactcaggaccccctccccgccccgccccatacagGGGACAAGTGTATGTCAGGTGGCTGCAATA---GGGACCATGATCTTGATTTATGCCAGCCGGGCCTGCTATAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGTCGGCTAGATGCCTTTGATTATGACTGGTATAATGTATCAGACCAGgtgagttacacattattccgggctgacaaggctgcacattagtgtctgta Alignment from Exonerate_coding2genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG gtagacatacctagaaactcaggaccccctccccgccccgccccatacagGGGACAAGTGTATGTCAGGTGGCTGCAATA---GGGACCATGATCTTGATTTATGCCAGCCGGGCCTGCTATAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGTCGGCTAGATGCCTTTGATTATGACTGGTATAATGTATCAGACCAGgtgagttacacattattccgggctgacaaggctgcacattagtgtctgta Alignment from GeneWise GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG gtagacatacctagaaactcaggaccccctccccgccccgccccatacagGGGACAAGTGTATGTCAGGTGGCTGCAATAGGG---ACCATGATCTTGATTTATGCCAGCCGGGCCTGCTATAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGTCGGCTAGATGCCTTTGATTATGACTGGTATAATGTATCAGACCAGgtgagttacacattattccgggctgacaaggctgcacattagtgtctgta #### Grk5_ID13388_2 --> 2 - 1 Original Alignment ggGGTGGAGGAAAGCGCAAAGGGAAAAGCAAGAAGTGGAAGGAAATCCTGAAGTTTCCTCACATCAGCCAGTGTGAAGACCTCCGAAGGACCATAg gccttgaagtgagtagctctagcattttcctttcccctgactgccagcagggGGTGGAGGAAAGCGCAAAGGGAAAAGCAAGAAGTGGAAAGAAATTCTCAAGTTTCCTCACATCAGCCAGTGTGAAGACCTCCGAAGGACCATAggtaagaatgaattaccttagttgccaattccttatatactaagtaaatac Alignment from CESAR ggGGTGGAGGAAAGCGCAAAGGGAAAAGCAAGAAGTGGAAGGAAATCCTGAAGTTTCCTCACATCAGCCAGTGTGAAGACCTCCGAAGGACCATAg gccttgaagtgagtagctctagcattttcctttcccctgactgccagcagggGGTGGAGGAAAGCGCAAAGGGAAAAGCAAGAAGTGGAAAGAAATTCTCAAGTTTCCTCACATCAGCCAGTGTGAAGACCTCCGAAGGACCATAggtaagaatgaattaccttagttgccaattccttatatactaagtaaatac Alignment from Spaln_aa2Genome GGGGTGGAGGAAAGCGCAAAGGGAAAAGCAAGAAGTGGAAGGAAATCCTGAAGTTTCCTCACATCAGCCAGTGTGAAGACCTCCGAAGGACCATAG gccttgaagtgagtagctctagcattttcctttcccctgactgccagcagGGGGTGGAGGAAAGCGCAAAGGGAAAAGCAAGAAGTGGAAAGAAATTCTCAAGTTTCCTCACATCAGCCAGTGTGAAGACCTCCGAAGGACCATAGgtaagaatgaattaccttagttgccaattccttatatactaagtaaatac Alignment from Spaln_nt2Genome GGGGTGGAGGAAAGCGCAAAGGGAAAAGCAAGAAGTGGAAGGAAATCCTGAAGTTTCCTCACATCAGCCAGTGTGAAGACCTCCGAAGGACCATAG gccttgaagtgagtagctctagcattttcctttcccctgactgccagcagGGGGTGGAGGAAAGCGCAAAGGGAAAAGCAAGAAGTGGAAAGAAATTCTCAAGTTTCCTCACATCAGCCAGTGTGAAGACCTCCGAAGGACCATAGgtaagaatgaattaccttagttgccaattccttatatactaagtaaatac Alignment from Pairagon GGGGTGGAGGAAAGCGCAAAGGGAAAAGCAAGAAGTGGAAGGAAATCCTGAAGTTTCCTCACATCAGCCAGTGTGAAGACCTCCGAAGGACCATAG gccttgaagtgagtagctctagcattttcctttcccctgactgccagcagGGGGTGGAGGAAAGCGCAAAGGGAAAAGCAAGAAGTGGAAAGAAATTCTCAAGTTTCCTCACATCAGCCAGTGTGAAGACCTCCGAAGGACCATAGgtaagaatgaattaccttagttgccaattccttatatactaagtaaatac Alignment from Exonerate_protein2genome GGGGTGGAGGAAAGCGCAAAGGGAAAAGCAAGAAGTGGAAGGAAATCCTGAAGTTTCCTCACATCAGCCAGTGTGAAGACCTCCGAAGGACCATAG gccttgaagtgagtagctctagcattttcctttcccctgactgccagcagGGGGTGGAGGAAAGCGCAAAGGGAAAAGCAAGAAGTGGAAAGAAATTCTCAAGTTTCCTCACATCAGCCAGTGTGAAGACCTCCGAAGGACCATAGgtaagaatgaattaccttagttgccaattccttatatactaagtaaatac Alignment from Exonerate_coding2genome GGGGGTGGAGGAAAGCGCAAAGGGAAAAGCAAGAAGTGGAAGGAAATCCTGAAGTTTCCTCACATCAGCCAGTGTGAAGACCTCCGAAGGACCATAG gccttgaagtgagtagctctagcattttcctttcccctgactgccagcaGGGGGTGGAGGAAAGCGCAAAGGGAAAAGCAAGAAGTGGAAAGAAATTCTCAAGTTTCCTCACATCAGCCAGTGTGAAGACCTCCGAAGGACCATAGgtaagaatgaattaccttagttgccaattccttatatactaagtaaatac Alignment from GeneWise --GGGGGTGGAGGAAAGCGCAAAGGGAAAAGCAAGAAGTGGAAGGAAATCCTGAAGTTTCCTCACATCAGCCAGTGTGAAGACCTCCGAAGGACCATAG gccttgaagtgagtagctctagcattttcctttcccctgactgccagCAGGGGGTGGAGGAAAGCGCAAAGGGAAAAGCAAGAAGTGGAAAGAAATTCTCAAGTTTCCTCACATCAGCCAGTGTGAAGACCTCCGAAGGACCATAGgtaagaatgaattaccttagttgccaattccttatatactaagtaaatac #### Grk5_ID13400_3 --> 2 - 0 Original Alignment acAGAGATTACTACAGTCTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGAGTGCTACATTCAGTTCCTGGACTTAGTG aattgaagatggacagaaattccattagtcgtcttcataccccatcctagacAGAGATTACTATAGTCTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGGCAGTTCTGTGAAATCAGGCCTGGGCTGGTCTGCTATATTCAGTTCCTGCACCTCGTTgtatgcacctaccacatgatccataaggtccctacaatgcaaagatttta Alignment from CESAR acAGAGATTACTACAGTCTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGAGTGCTACATTCAGTTCCTGGACTTAGTG aattgaagatggacagaaattccattagtcgtcttcataccccatcctagacAGAGATTACTATAGTCTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGGCAGTTCTGTGAAATCAGGCCTGGGCTGGTCTGCTATATTCAGTTCCTGCACCTCGTTgtatgcacctaccacatgatccataaggtccctacaatgcaaagatttta Alignment from Spaln_aa2Genome ACAGAGATTACTACAGTCTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGAGTGCTACATTCAGTTCCTGGACTTAGTG aattgaagatggacagaaattccattagtcgtcttcataccccatcctagACAGAGATTACTATAGTCTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGGCAGTTCTGTGAAATCAGGCCTGGGCTGGTCTGCTATATTCAGTTCCTGCACCTCGTTgtatgcacctaccacatgatccataaggtccctacaatgcaaagatttta Alignment from Spaln_nt2Genome ACAGAGATTACTACAGTCTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGAGTGCTACATTCAGTTCCTGGACTTAGTG aattgaagatggacagaaattccattagtcgtcttcataccccatcctagACAGAGATTACTATAGTCTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGGCAGTTCTGTGAAATCAGGCCTGGGCTGGTCTGCTATATTCAGTTCCTGCACCTCGTTgtatgcacctaccacatgatccataaggtccctacaatgcaaagatttta Alignment from Pairagon ACAGAGATTACTACAGTCTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGAGTGCTACATTCAGTTCCTGGACTTAGTG aattgaagatggacagaaattccattagtcgtcttcataccccatcctagACAGAGATTACTATAGTCTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGGCAGTTCTGTGAAATCAGGCCTGGGCTGGTCTGCTATATTCAGTTCCTGCACCTCGTTgtatgcacctaccacatgatccataaggtccctacaatgcaaagatttta Alignment from Exonerate_protein2genome ACAGAGATTACTACAGTCTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGAGTGCTACATTCAGTTCCTGGACTTAGTG aattgaagatggacagaaattccattagtcgtcttcataccccatcctagACAGAGATTACTATAGTCTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGGCAGTTCTGTGAAATCAGGCCTGGGCTGGTCTGCTATATTCAGTTCCTGCACCTCGTTgtatgcacctaccacatgatccataaggtccctacaatgcaaagatttta Alignment from Exonerate_coding2genome ACAGAGATTACTACAGTCTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGAGTGCTACATTCAGTTCCTGGACTTAGTG aattgaagatggacagaaattccattagtcgtcttcataccccatcctagACAGAGATTACTATAGTCTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGGCAGTTCTGTGAAATCAGGCCTGGGCTGGTCTGCTATATTCAGTTCCTGCACCTCGTTgtatgcacctaccacatgatccataaggtccctacaatgcaaagatttta Alignment from GeneWise ACAGAGATTACTACAGTCTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGAGTGCTACATTCAGTTCCTGGACTTAGTG aattgaagatggacagaaattccattagtcgtcttcataccccatcctagACAGAGATTACTATAGTCTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGGCAGTTCTGTGAAATCAGGCCTGGGCTGGTCTGCTATATTCAGTTCCTGCACCTCGTTgtatgcacctaccacatgatccataaggtccctacaatgcaaagatttta #### Grk5_ID13413_7 --> 1 - 0 Original Alignment aCAACCAGTGACCAAAAACACTTTCCGGCAGTACCGAGTGCTGGGCAAAGGGGGCTTTGGAGAG atcctaatccttagtcttaggggtgaaactgacattttctcctttcacagaCAACCAGTGACGAAAAATGCTTTCCGGCAGTACCGGGTGCTGGGCAAAGGAGGCTTTGGTGAGgtacttgggtaaagatggcatgggtttctggtgtgctcatctaactggag Alignment from CESAR aCAACCAGTGACCAAAAACACTTTCCGGCAGTACCGAGTGCTGGGCAAAGGGGGCTTTGGAGAG atcctaatccttagtcttaggggtgaaactgacattttctcctttcacagaCAACCAGTGACGAAAAATGCTTTCCGGCAGTACCGGGTGCTGGGCAAAGGAGGCTTTGGTGAGgtacttgggtaaagatggcatgggtttctggtgtgctcatctaactggag Alignment from Spaln_aa2Genome ACAACCAGTGACCAAAAACACTTTCCGGCAGTACCGAGTGCTGGGCAAAGGGGGCTTTGGAGAG atcctaatccttagtcttaggggtgaaactgacattttctcctttcacagACAACCAGTGACGAAAAATGCTTTCCGGCAGTACCGGGTGCTGGGCAAAGGAGGCTTTGGTGAGgtacttgggtaaagatggcatgggtttctggtgtgctcatctaactggag Alignment from Spaln_nt2Genome ACAACCAGTGACCAAAAACACTTTCCGGCAGTACCGAGTGCTGGGCAAAGGGGGCTTTGGAGAG atcctaatccttagtcttaggggtgaaactgacattttctcctttcacagACAACCAGTGACGAAAAATGCTTTCCGGCAGTACCGGGTGCTGGGCAAAGGAGGCTTTGGTGAGgtacttgggtaaagatggcatgggtttctggtgtgctcatctaactggag Alignment from Pairagon ACAACCAGTGACCAAAAACACTTTCCGGCAGTACCGAGTGCTGGGCAAAGGGGGCTTTGGAGAG atcctaatccttagtcttaggggtgaaactgacattttctcctttcacagACAACCAGTGACGAAAAATGCTTTCCGGCAGTACCGGGTGCTGGGCAAAGGAGGCTTTGGTGAGgtacttgggtaaagatggcatgggtttctggtgtgctcatctaactggag Alignment from Exonerate_protein2genome ACAACCAGTGACCAAAAACACTTTCCGGCAGTACCGAGTGCTGGGCAAAGGGGGCTTTGGAGAG atcctaatccttagtcttaggggtgaaactgacattttctcctttcacagACAACCAGTGACGAAAAATGCTTTCCGGCAGTACCGGGTGCTGGGCAAAGGAGGCTTTGGTGAGgtacttgggtaaagatggcatgggtttctggtgtgctcatctaactggag Alignment from Exonerate_coding2genome ACAACCAGTGACCAAAAACACTTTCCGGCAGTACCGAGTGCTGGGCAAAGGGGGCTTTGGAGAG atcctaatccttagtcttaggggtgaaactgacattttctcctttcacagACAACCAGTGACGAAAAATGCTTTCCGGCAGTACCGGGTGCTGGGCAAAGGAGGCTTTGGTGAGgtacttgggtaaagatggcatgggtttctggtgtgctcatctaactggag Alignment from GeneWise ACAACCAGTGACCAAAAACACTTTCCGGCAGTACCGAGTGCTGGGCAAAGGGGGCTTTGGAGAG atcctaatccttagtcttaggggtgaaactgacattttctcctttcacagACAACCAGTGACGAAAAATGCTTTCCGGCAGTACCGGGTGCTGGGCAAAGGAGGCTTTGGTGAGgtacttgggtaaagatggcatgggtttctggtgtgctcatctaactggag #### Grk5_ID13421_14 --> 0 - 0 Original Alignment CCCCGGGCTGTATACTGCAAGGATGTGCTGGACATTGAGCAGTTCTCCACTGTGAAAGGTGTCAACCTGGACCATACGGACGAT------GATTTTTACTCAAAGTTCTCTACAGGCTCTGTGCCAATTCCATGGCAAAATGAG atgtacccaaaacagcaaggttggtggtgtcttttctctttcttttgcagCCCTGGGCTGTGTATTGCACAGATGTGCTGGACATTGGACAGTTCTCCGCTGTGAAAGGTGTCCAG---GACCACACTGATGATGATGATGGCTTCTACTCAAAATACTCAACAGGTTCTGTGCCTAGTCCATGGCAAAATGAAgtgagtgaggcaaaccagggcagaatcagcattatccctttgtatcttag Alignment from CESAR CCCCGGGCTGTATACTGCAAGGATGTGCTGGACATTGAGCAGTTCTCCACTGTGAAAGGTGTCAACCTGGACCATACGGACGATGAT------TTTTACTCAAAGTTCTCTACAGGCTCTGTGCCAATTCCATGGCAAAATGAG atgtacccaaaacagcaaggttggtggtgtcttttctctttcttttgcagCCCTGGGCTGTGTATTGCACAGATGTGCTGGACATTGGACAGTTCTCCGCTGTGAAAGGTGTC---CAGGACCACACTGATGATGATGATGGCTTCTACTCAAAATACTCAACAGGTTCTGTGCCTAGTCCATGGCAAAATGAAgtgagtgaggcaaaccagggcagaatcagcattatccctttgtatcttag Alignment from Spaln_aa2Genome CCCCGGGCTGTATACTGCAAGGATGTGCTGGACATTGAGCAGTTCTCCACTGTGAAAGGTGTCAACCTGGACCATACGGACGATGAT------TTTTACTCAAAGTTCTCTACAGGCTCTGTGCCAATTCCATGGCAAAATGAG atgtacccaaaacagcaaggttggtggtgtcttttctctttcttttgcagCCCTGGGCTGTGTATTGCACAGATGTGCTGGACATTGGACAGTTCTCCGCTGTGAAAGGTGTCCAG---GACCACACTGATGATGATGATGGCTTCTACTCAAAATACTCAACAGGTTCTGTGCCTAGTCCATGGCAAAATGAAgtgagtgaggcaaaccagggcagaatcagcattatccctttgtatcttag Alignment from Spaln_nt2Genome CCCCGGGCTGTATACTGCAAGGATGTGCTGGACATTGAGCAGTTCTCCACTGTGAAAGGTGTCAACCTGGACCATACGGACGATGAT------TTTTACTCAAAGTTCTCTACAGGCTCTGTGCCAATTCCATGGCAAAATGAG atgtacccaaaacagcaaggttggtggtgtcttttctctttcttttgcagCCCTGGGCTGTGTATTGCACAGATGTGCTGGACATTGGACAGTTCTCCGCTGTGAAAGGTGT---CCAGGACCACACTGATGATGATGATGGCTTCTACTCAAAATACTCAACAGGTTCTGTGCCTAGTCCATGGCAAAATGAAgtgagtgaggcaaaccagggcagaatcagcattatccctttgtatcttag Alignment from Pairagon CCCCGGGCTGTATACTGCAAGGATGTGCTGGACATTGAGCAGTTCTCCACTGTGAAAGGTGTCAACCTGGACCATACGGACGATGAT------TTTTACTCAAAGTTCTCTACAGGCTCTGTGCCAATTCCATGGCAAAATGAG atgtacccaaaacagcaaggttggtggtgtcttttctctttcttttgcagCCCTGGGCTGTGTATTGCACAGATGTGCTGGACATTGGACAGTTCTCCGCTGTGAAAGGTGTCCA---GGACCACACTGATGATGATGATGGCTTCTACTCAAAATACTCAACAGGTTCTGTGCCTAGTCCATGGCAAAATGAAgtgagtgaggcaaaccagggcagaatcagcattatccctttgtatcttag Alignment from Exonerate_protein2genome CCCCGGGCTGTATACTGCAAGGATGTGCTGGACATTGAGCAGTTCTCCACTGTGAAAGGTGTCAACCTGGACCATACGGACGATGAT------TTTTACTCAAAGTTCTCTACAGGCTCTGTGCCAATTCCATGGCAAAATGAG atgtacccaaaacagcaaggttggtggtgtcttttctctttcttttgcagCCCTGGGCTGTGTATTGCACAGATGTGCTGGACATTGGACAGTTCTCCGCTGTGAAAGGTGTCCAG---GACCACACTGATGATGATGATGGCTTCTACTCAAAATACTCAACAGGTTCTGTGCCTAGTCCATGGCAAAATGAAgtgagtgaggcaaaccagggcagaatcagcattatccctttgtatcttag Alignment from Exonerate_coding2genome CCCCGGGCTGTATACTGCAAGGATGTGCTGGACATTGAGCAGTTCTCCACTGTGAAAGGTGTCAACCTGGACCATACGGACGATGAT------TTTTACTCAAAGTTCTCTACAGGCTCTGTGCCAATTCCATGGCAAAATGAG atgtacccaaaacagcaaggttggtggtgtcttttctctttcttttgcagCCCTGGGCTGTGTATTGCACAGATGTGCTGGACATTGGACAGTTCTCCGCTGTGAAAGGTGTCCAG---GACCACACTGATGATGATGATGGCTTCTACTCAAAATACTCAACAGGTTCTGTGCCTAGTCCATGGCAAAATGAAgtgagtgaggcaaaccagggcagaatcagcattatccctttgtatcttag Alignment from GeneWise CCCCGGGCTGTATACTGCAAGGATGTGCTGGACATTGAGCAGTTCTCCACTGTGAAAGGTGTCAACCTGGACCATACGGACGATGAT------TTTTACTCAAAGTTCTCTACAGGCTCTGTGCCAATTCCATGGCAAAATGAG atgtacccaaaacagcaaggttggtggtgtcttttctctttcttttgcagCCCTGGGCTGTGTATTGCACAGATGTGCTGGACATTGGACAGTTCTCCGCTGTGAAAGGTGTCCAG---GACCACACTGATGATGATGATGGCTTCTACTCAAAATACTCAACAGGTTCTGTGCCTAGTCCATGGCAAAATGAAgtgagtgaggcaaaccagggcagaatcagcattatccctttgtatcttag #### Gucy2g_ID11571_20 --> 2 - 0 Original Alignment ctCTCCGGATTCACGTTTCCCAGAGCACCGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAAAGAGA---GGCACCATTTCAGTCAAG atccattgtcttgcaaatggtgaaagtatctttctcatgatctcttctagctCTCCGCATTCATATTTCACACAGCACTTCTGGTGCTCTTTTAGCAGCAGGGGGGTACCCTCTGCAAGAGAGAGGCAGCACTGTTTCTGTGAAGgtgagcctgggcctttcttgtgcttggcattgatgatgcctaaatcacga Alignment from CESAR ctCTCCGGATTCACGTTTCCCAGAGCACCGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAAAGAGAGGC---ACCATTTCAGTCAAG atccattgtcttgcaaatggtgaaagtatctttctcatgatctcttctagctCTCCGCATTCATATTTCACACAGCACTTCTGGTGCTCTTTTAGCAGCAGGGGGGTACCCTCTGCAAGAGAGAGGCAGCACTGTTTCTGTGAAGgtgagcctgggcctttcttgtgcttggcattgatgatgcctaaatcacga Alignment from Spaln_aa2Genome CTCTCCGGATTCACGTTTCCCAGAGCACCGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAAAGAGAGGC---ACCATTTCAGTCAAG atccattgtcttgcaaatggtgaaagtatctttctcatgatctcttctagCTCTCCGCATTCATATTTCACACAGCACTTCTGGTGCTCTTTTAGCAGCAGGGGGGTACCCTCTGCAAGAGAGAGGCAGCACTGTTTCTGTGAAGgtgagcctgggcctttcttgtgcttggcattgatgatgcctaaatcacga Alignment from Spaln_nt2Genome CTCTCCGGATTCACGTTTCCCAGAGCACCGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAAAGAGAGGCACCA---TTTCAGTCAAG atccattgtcttgcaaatggtgaaagtatctttctcatgatctcttctagCTCTCCGCATTCATATTTCACACAGCACTTCTGGTGCTCTTTTAGCAGCAGGGGGGTACCCTCTGCAAGAGAGAGGCAGCACTGTTTCTGTGAAGgtgagcctgggcctttcttgtgcttggcattgatgatgcctaaatcacga Alignment from Pairagon CTCTCCGGATTCACGTTTCCCAGAGCACCGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAAAGAGAGGCACCA---TTTCAGTCAAG atccattgtcttgcaaatggtgaaagtatctttctcatgatctcttctagCTCTCCGCATTCATATTTCACACAGCACTTCTGGTGCTCTTTTAGCAGCAGGGGGGTACCCTCTGCAAGAGAGAGGCAGCACTGTTTCTGTGAAGgtgagcctgggcctttcttgtgcttggcattgatgatgcctaaatcacga Alignment from Exonerate_protein2genome CTCTCCGGATTCACGTTTCCCAGAGCACCGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAAAGAGAGGC---ACCATTTCAGTCAAG atccattgtcttgcaaatggtgaaagtatctttctcatgatctcttctagCTCTCCGCATTCATATTTCACACAGCACTTCTGGTGCTCTTTTAGCAGCAGGGGGGTACCCTCTGCAAGAGAGAGGCAGCACTGTTTCTGTGAAGgtgagcctgggcctttcttgtgcttggcattgatgatgcctaaatcacga Alignment from Exonerate_coding2genome CTCTCCGGATTCACGTTTCCCAGAGCACCGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAAAGAGAGGC---ACCATTTCAGTCAAG atccattgtcttgcaaatggtgaaagtatctttctcatgatctcttctagCTCTCCGCATTCATATTTCACACAGCACTTCTGGTGCTCTTTTAGCAGCAGGGGGGTACCCTCTGCAAGAGAGAGGCAGCACTGTTTCTGTGAAGgtgagcctgggcctttcttgtgcttggcattgatgatgcctaaatcacga Alignment from GeneWise CTCTCCGGATTCACGTTTCCCAGAGCACCGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAAAGAGAGGC---ACCATTTCAGTCAAG atccattgtcttgcaaatggtgaaagtatctttctcatgatctcttctagCTCTCCGCATTCATATTTCACACAGCACTTCTGGTGCTCTTTTAGCAGCAGGGGGGTACCCTCTGCAAGAGAGAGGCAGCACTGTTTCTGTGAAGgtgagcctgggcctttcttgtgcttggcattgatgatgcctaaatcacga #### Gucy2g_ID11573_18 --> 0 - 1 Original Alignment GTTGAAACCATTGGAGATGCCTACATGGTGGCAAGTGGGCTCCCCATCCGCAACGGAGCTCAGCATGCCGACGAG---ATTGCCACCATGGCCCTGCACTTACTCAGTGTCACCACCCACTTCCAGATCGGGCACATGCCTGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACACAg agtctcataggtgcatgtaaacaataagaataccttctcccctttttcagATTGAAACCATTGGAGATGCACACATGGTGGCCAGTGGGCTCCCTATCCGCAATGGTGCTCAGCATGCTGACACAATGATTGTGACCATGGCATTGCATCTACTCTGTGTCACAACCCACTTTCAGATTGGTCACATGCCAGAGGAAAGCCTCAAGCTCAGCATAGGCCTCCACCCAggtgagtagcattgctactgtgggtagttgccacaccctaccaatatatta Alignment from CESAR GTTGAAACCATTGGAGATGCCTACATGGTGGCAAGTGGGCTCCCCATCCGCAACGGAGCTCAGCATGCCGACGAG---ATTGCCACCATGGCCCTGCACTTACTCAGTGTCACCACCCACTTCCAGATCGGGCACATGCCTGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACACAg agtctcataggtgcatgtaaacaataagaataccttctcccctttttcagATTGAAACCATTGGAGATGCACACATGGTGGCCAGTGGGCTCCCTATCCGCAATGGTGCTCAGCATGCTGACACAATGATTGTGACCATGGCATTGCATCTACTCTGTGTCACAACCCACTTTCAGATTGGTCACATGCCAGAGGAAAGCCTCAAGCTCAGCATAGGCCTCCACCCAggtgagtagcattgctactgtgggtagttgccacaccctaccaatatatta Alignment from Spaln_aa2Genome GTTGAAACCATTGGAGATGCCTACATGGTGGCAAGTGGGCTCCCCATCCGCAACGGAGCTCAGCATGCCGACGAG---ATTGCCACCATGGCCCTGCACTTACTCAGTGTCACCACCCACTTCCAGATCGGGCACATGCCTGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACACAG agtctcataggtgcatgtaaacaataagaataccttctcccctttttcagATTGAAACCATTGGAGATGCACACATGGTGGCCAGTGGGCTCCCTATCCGCAATGGTGCTCAGCATGCTGACACAATGATTGTGACCATGGCATTGCATCTACTCTGTGTCACAACCCACTTTCAGATTGGTCACATGCCAGAGGAAAGCCTCAAGCTCAGCATAGGCCTCCACCCAGgtgagtagcattgctactgtgggtagttgccacaccctaccaatatatta Alignment from Spaln_nt2Genome GTTGAAACCATTGGAGATGCCTACATGGTGGCAAGTGGGCTCCCCATCCGCAACGGAGCTCAGCATGCCGACGA---GATTGCCACCATGGCCCTGCACTTACTCAGTGTCACCACCCACTTCCAGATCGGGCACATGCCTGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACACAG agtctcataggtgcatgtaaacaataagaataccttctcccctttttcagATTGAAACCATTGGAGATGCACACATGGTGGCCAGTGGGCTCCCTATCCGCAATGGTGCTCAGCATGCTGACACAATGATTGTGACCATGGCATTGCATCTACTCTGTGTCACAACCCACTTTCAGATTGGTCACATGCCAGAGGAAAGCCTCAAGCTCAGCATAGGCCTCCACCCAGgtgagtagcattgctactgtgggtagttgccacaccctaccaatatatta Alignment from Pairagon GTTGAAACCATTGGAGATGCCTACATGGTGGCAAGTGGGCTCCCCATCCGCAACGGAGCTCAGCATGCCGACGA---GATTGCCACCATGGCCCTGCACTTACTCAGTGTCACCACCCACTTCCAGATCGGGCACATGCCTGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACACAG agtctcataggtgcatgtaaacaataagaataccttctcccctttttcagATTGAAACCATTGGAGATGCACACATGGTGGCCAGTGGGCTCCCTATCCGCAATGGTGCTCAGCATGCTGACACAATGATTGTGACCATGGCATTGCATCTACTCTGTGTCACAACCCACTTTCAGATTGGTCACATGCCAGAGGAAAGCCTCAAGCTCAGCATAGGCCTCCACCCAGgtgagtagcattgctactgtgggtagttgccacaccctaccaatatatta Alignment from Exonerate_protein2genome GTTGAAACCATTGGAGATGCCTACATGGTGGCAAGTGGGCTCCCCATCCGCAACGGAGCTCAGCATGCCGACGAG---ATTGCCACCATGGCCCTGCACTTACTCAGTGTCACCACCCACTTCCAGATCGGGCACATGCCTGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACACAG agtctcataggtgcatgtaaacaataagaataccttctcccctttttcagATTGAAACCATTGGAGATGCACACATGGTGGCCAGTGGGCTCCCTATCCGCAATGGTGCTCAGCATGCTGACACAATGATTGTGACCATGGCATTGCATCTACTCTGTGTCACAACCCACTTTCAGATTGGTCACATGCCAGAGGAAAGCCTCAAGCTCAGCATAGGCCTCCACCCAGgtgagtagcattgctactgtgggtagttgccacaccctaccaatatatta Alignment from Exonerate_coding2genome GTTGAAACCATTGGAGATGCCTACATGGTGGCAAGTGGGCTCCCCATCCGCAACGGAGCTCAGCATGCCGACGAG---ATTGCCACCATGGCCCTGCACTTACTCAGTGTCACCACCCACTTCCAGATCGGGCACATGCCTGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACACAG agtctcataggtgcatgtaaacaataagaataccttctcccctttttcagATTGAAACCATTGGAGATGCACACATGGTGGCCAGTGGGCTCCCTATCCGCAATGGTGCTCAGCATGCTGACACAATGATTGTGACCATGGCATTGCATCTACTCTGTGTCACAACCCACTTTCAGATTGGTCACATGCCAGAGGAAAGCCTCAAGCTCAGCATAGGCCTCCACCCAGgtgagtagcattgctactgtgggtagttgccacaccctaccaatatatta Alignment from GeneWise GTTGAAACCATTGGAGATGCCTACATGGTGGCAAGTGGGCTCCCCATCCGCAACGGAGCTCAGCATGCCGACGAG---ATTGCCACCATGGCCCTGCACTTACTCAGTGTCACCACCCACTTCCAGATCGGGCACATGCCTGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACACAG agtctcataggtgcatgtaaacaataagaataccttctcccctttttcagATTGAAACCATTGGAGATGCACACATGGTGGCCAGTGGGCTCCCTATCCGCAATGGTGCTCAGCATGCTGACACAATGATTGTGACCATGGCATTGCATCTACTCTGTGTCACAACCCACTTTCAGATTGGTCACATGCCAGAGGAAAGCCTCAAGCTCAGCATAGGCCTCCACCCAGgtgagtagcattgctactgtgggtagttgccacaccctaccaatatatta #### Gucy2g_ID11586_5 --> 0 - 1 Original Alignment GTGAGCCCGTACTCTGCCTACCTGCACGATGCTCTCTTACTCTACGCTCAGACTGTGGAGGAAATGAGGAAGGCTGAGAAAGACTTCCGGGATGGGCGGCAGCTGATTAGCACCCTGAGAGCTGGTCAGGTCACACTGCAGg atgcacctcttggtctttgctgtaccacctgcatgtcttgttttggtcagGTGAGCCCATACTCAGCTTACCTCCATGATGCACTGCTACTCTATGCTGAAACTGTGGAAGAAATGAGAAAAGCTAAGAAAGACTTCAGGCATGGGCAGCAGCTG---AGCACTCTAAGAGCTGGGCAGGTCACT---CAGggtgagcggttttcaagactgaccaattttctaagataaagaatgtccatt Alignment from CESAR GTGAGCCCGTACTCTGCCTACCTGCACGATGCTCTCTTACTCTACGCTCAGACTGTGGAGGAAATGAGGAAGGCTGAGAAAGACTTCCGGGATGGGCGGCAGCTGATTAGCACCCTGAGAGCTGGTCAGGTCACACTGCAGg atgcacctcttggtctttgctgtaccacctgcatgtcttgttttggtcagGTGAGCCCATACTCAGCTTACCTCCATGATGCACTGCTACTCTATGCTGAAACTGTGGAAGAAATGAGAAAAGCTAAGAAAGACTTCAGGCATGGGCAGCAGCTG---AGCACTCTAAGAGCTGGGCAGGTCACT---CAGggtgagcggttttcaagactgaccaattttctaagataaagaatgtccatt Alignment from Spaln_aa2Genome GTGAGCCCGTACTCTGCCTACCTGCACGATGCTCTCTTACTCTACGCTCAGACTGTGGAGGAAATGAGGAAGGCTGAGAAAGACTTCCGGGATGGGCGGCAGCTGATTAGCACCCTGAGAGCTGGTCAGGTCACACTGCAGG atgcacctcttggtctttgctgtaccacctgcatgtcttgttttggtcagGTGAGCCCATACTCAGCTTACCTCCATGATGCACTGCTACTCTATGCTGAAACTGTGGAAGAAATGAGAAAAGCTAAGAAAGACTTCAGGCATGGGCAGCAGCTG---AGCACTCTAAGAGCTGGGCAGGTCACT---CAGGgtgagcggttttcaagactgaccaattttctaagataaagaatgtccatt Alignment from Spaln_nt2Genome GTGAGCCCGTACTCTGCCTACCTGCACGATGCTCTCTTACTCTACGCTCAGACTGTGGAGGAAATGAGGAAGGCTGAGAAAGACTTCCGGGATGGGCGGCAGCTGATTAGCACCCTGAGAGCTGGTCAGGTCACACTGCAGG atgcacctcttggtctttgctgtaccacctgcatgtcttgttttggtcagGTGAGCCCATACTCAGCTTACCTCCATGATGCACTGCTACTCTATGCTGAAACTGTGGAAGAAATGAGAAAAGCTAAGAAAGACTTCAGGCATGGGCAGCAGCTG---AGCACTCTAAGAGCTGGGCAGGTCAC---TCAGGgtgagcggttttcaagactgaccaattttctaagataaagaatgtccatt Alignment from Pairagon GTGAGCCCGTACTCTGCCTACCTGCACGATGCTCTCTTACTCTACGCTCAGACTGTGGAGGAAATGAGGAAGGCTGAGAAAGACTTCCGGGATGGGCGGCAGCTGATTAGCACCCTGAGAGCTGGTCAGGTCACACTGCAGG atgcacctcttggtctttgctgtaccacctgcatgtcttgttttggtcagGTGAGCCCATACTCAGCTTACCTCCATGATGCACTGCTACTCTATGCTGAAACTGTGGAAGAAATGAGAAAAGCTAAGAAAGACTTCAGGCATGGGCAGCAGCTG---AGCACTCTAAGAGCTGGGCAGGTCAC---TCAGGgtgagcggttttcaagactgaccaattttctaagataaagaatgtccatt Alignment from Exonerate_protein2genome GTGAGCCCGTACTCTGCCTACCTGCACGATGCTCTCTTACTCTACGCTCAGACTGTGGAGGAAATGAGGAAGGCTGAGAAAGACTTCCGGGATGGGCGGCAGCTGATTAGCACCCTGAGAGCTGGTCAGGTCACACTGCAGG atgcacctcttggtctttgctgtaccacctgcatgtcttgttttggtcagGTGAGCCCATACTCAGCTTACCTCCATGATGCACTGCTACTCTATGCTGAAACTGTGGAAGAAATGAGAAAAGCTAAGAAAGACTTCAGGCATGGGCAGCAGCTG---AGCACTCTAAGAGCTGGGCAGGTCACT---CAGGgtgagcggttttcaagactgaccaattttctaagataaagaatgtccatt Alignment from Exonerate_coding2genome atgcacctcttggtctttgctgtaccacctgcatgtcttgttttggtcaggtgagcccatactcagcttacctccatgatgcactgctactctatgctgaaactgtggaagaaatgagaaaagctaagaaagacttcaggcatgggcagcagctgagcactctaagagctgggcaggtcactcagggtgagcggttttcaagactgaccaattttctaagataaagaatgtccatt Alignment from GeneWise GTGAGCCCGTACTCTGCCTACCTGCACGATGCTCTCTTACTCTACGCTCAGACTGTGGAGGAAATGAGGAAGGCTGAGAAAGACTTCCGGGATGGGCGGCAGCTGATTAGCACCCTGAGAGCTGGTCAGGTCACACTGCAGG atgcacctcttggtctttgctgtaccacctgcatgtcttgttttggtcagGTGAGCCCATACTCAGCTTACCTCCATGATGCACTGCTACTCTATGCTGAAACTGTGGAAGAAATGAGAAAAGCTAAGAAAGACTTCAGGCATGGGCAGCAGCTG---AGCACTCTAAGAGCTGGGCAGGTCACT---CAGGgtgagcggttttcaagactgaccaattttctaagataaagaatgtccatt #### Habp2_ID12057_3 --> 2 - 1 Original Alignment atCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCATCAGAGGGGATACCTTCAGTTGCAGCTGCCCAGCCCCCTTCTCGGGGAGCCGGTGCCAGACTg cccctgtgcattatgcctgtttgattttaacctgtcattatgttttatagatCTATGCCAGTCCAACCCTTGTGAACATGGGGGTGATTGTATTCTCAGAGGGGACACCTTCACTTGTAGCTGTCCCGGCCCATTTTCAGGAAGCCGATGCAAGACTggtgaatatatgactaggcatccacaatgccactgtatcgatctgcgccag Alignment from CESAR atCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCATCAGAGGGGATACCTTCAGTTGCAGCTGCCCAGCCCCCTTCTCGGGGAGCCGGTGCCAGACTg cccctgtgcattatgcctgtttgattttaacctgtcattatgttttatagatCTATGCCAGTCCAACCCTTGTGAACATGGGGGTGATTGTATTCTCAGAGGGGACACCTTCACTTGTAGCTGTCCCGGCCCATTTTCAGGAAGCCGATGCAAGACTggtgaatatatgactaggcatccacaatgccactgtatcgatctgcgccag Alignment from Spaln_aa2Genome ATCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCATCAGAGGGGATACCTTCAGTTGCAGCTGCCCAGCCCCCTTCTCGGGGAGCCGGTGCCAGACTG cccctgtgcattatgcctgtttgattttaacctgtcattatgttttatagATCTATGCCAGTCCAACCCTTGTGAACATGGGGGTGATTGTATTCTCAGAGGGGACACCTTCACTTGTAGCTGTCCCGGCCCATTTTCAGGAAGCCGATGCAAGACTGgtgaatatatgactaggcatccacaatgccactgtatcgatctgcgccag Alignment from Spaln_nt2Genome ATCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCATCAGAGGGGATACCTTCAGTTGCAGCTGCCCAGCCCCCTTCTCGGGGAGCCGGTGCCAGACTG cccctgtgcattatgcctgtttgattttaacctgtcattatgttttatagATCTATGCCAGTCCAACCCTTGTGAACATGGGGGTGATTGTATTCTCAGAGGGGACACCTTCACTTGTAGCTGTCCCGGCCCATTTTCAGGAAGCCGATGCAAGACTGgtgaatatatgactaggcatccacaatgccactgtatcgatctgcgccag Alignment from Pairagon ATCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCATCAGAGGGGATACCTTCAGTTGCAGCTGCCCAGCCCCCTTCTCGGGGAGCCGGTGCCAGACTG cccctgtgcattatgcctgtttgattttaacctgtcattatgttttatagATCTATGCCAGTCCAACCCTTGTGAACATGGGGGTGATTGTATTCTCAGAGGGGACACCTTCACTTGTAGCTGTCCCGGCCCATTTTCAGGAAGCCGATGCAAGACTGgtgaatatatgactaggcatccacaatgccactgtatcgatctgcgccag Alignment from Exonerate_protein2genome ATCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCATCAGAGGGGATACCTTCAGTTGCAGCTGCCCAGCCCCCTTCTCGGGGAGCCGGTGCCAGACTG cccctgtgcattatgcctgtttgattttaacctgtcattatgttttatagATCTATGCCAGTCCAACCCTTGTGAACATGGGGGTGATTGTATTCTCAGAGGGGACACCTTCACTTGTAGCTGTCCCGGCCCATTTTCAGGAAGCCGATGCAAGACTGgtgaatatatgactaggcatccacaatgccactgtatcgatctgcgccag Alignment from Exonerate_coding2genome ATCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCATCAGAGGGGATACCTTCAGTTGCAGCTGCCCAGCCCCCTTCTCGGGGAGCCGGTGCCAGACTG cccctgtgcattatgcctgtttgattttaacctgtcattatgttttatagATCTATGCCAGTCCAACCCTTGTGAACATGGGGGTGATTGTATTCTCAGAGGGGACACCTTCACTTGTAGCTGTCCCGGCCCATTTTCAGGAAGCCGATGCAAGACTGgtgaatatatgactaggcatccacaatgccactgtatcgatctgcgccag Alignment from GeneWise GATCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCATCAGAGGGGATACCTTCAGTTGCAGCTGCCCAGCCCCCTTCTCGGGGAGCCGGTGCCAGACTG cccctgtgcattatgcctgtttgattttaacctgtcattatgttttataGATCTATGCCAGTCCAACCCTTGTGAACATGGGGGTGATTGTATTCTCAGAGGGGACACCTTCACTTGTAGCTGTCCCGGCCCATTTTCAGGAAGCCGATGCAAGACTGgtgaatatatgactaggcatccacaatgccactgtatcgatctgcgccag #### Habp2_ID12061_7 --> 1 - 1 Original Alignment aAACCCAGATGGAGACCACAAACCCTGGTGTTTCGTCAAGGTGAACAGTGAGAAGGTGAAATGGGAATACTGTGATGTCACAGTCTGTCCAGTGCCTg aataatgcgaatgtgaccctctggtgatatattttcccaatttctttcaggAATGAGGATGGAGACCACAAACTCTGGTGTTCAGTCAAGGTGAACAGTGAGAAGGTTAAATGGGAGTACTGTGATGTCACTGTCTGTCCAGTGCCTggtattgttctgccaccttcacagcttgcaaagaaaattggtggtgtcaag Alignment from CESAR aAACCCAGATGGAGACCACAAACCCTGGTGTTTCGTCAAGGTGAACAGTGAGAAGGTGAAATGGGAATACTGTGATGTCACAGTCTGTCCAGTGCCTg aataatgcgaatgtgaccctctggtgatatattttcccaatttctttcaggAATGAGGATGGAGACCACAAACTCTGGTGTTCAGTCAAGGTGAACAGTGAGAAGGTTAAATGGGAGTACTGTGATGTCACTGTCTGTCCAGTGCCTggtattgttctgccaccttcacagcttgcaaagaaaattggtggtgtcaag Alignment from Spaln_aa2Genome AAACCCAGATGGAGACCACAAACCCTGGTGTTTCGTCAAGGTGAACAGTGAGAAGGTGAAATGGGAATACTGTGATGTCACAGTCTGTCCAGTGCCTG aataatgcgaatgtgaccctctggtgatatattttcccaatttctttcagGAATGAGGATGGAGACCACAAACTCTGGTGTTCAGTCAAGGTGAACAGTGAGAAGGTTAAATGGGAGTACTGTGATGTCACTGTCTGTCCAGTGCCTGgtattgttctgccaccttcacagcttgcaaagaaaattggtggtgtcaag Alignment from Spaln_nt2Genome AAACCCAGATGGAGACCACAAACCCTGGTGTTTCGTCAAGGTGAACAGTGAGAAGGTGAAATGGGAATACTGTGATGTCACAGTCTGTCCAGTGCCTG aataatgcgaatgtgaccctctggtgatatattttcccaatttctttcagGAATGAGGATGGAGACCACAAACTCTGGTGTTCAGTCAAGGTGAACAGTGAGAAGGTTAAATGGGAGTACTGTGATGTCACTGTCTGTCCAGTGCCTGgtattgttctgccaccttcacagcttgcaaagaaaattggtggtgtcaag Alignment from Pairagon AAACCCAGATGGAGACCACAAACCCTGGTGTTTCGTCAAGGTGAACAGTGAGAAGGTGAAATGGGAATACTGTGATGTCACAGTCTGTCCAGTGCCTG aataatgcgaatgtgaccctctggtgatatattttcccaatttctttcagGAATGAGGATGGAGACCACAAACTCTGGTGTTCAGTCAAGGTGAACAGTGAGAAGGTTAAATGGGAGTACTGTGATGTCACTGTCTGTCCAGTGCCTGgtattgttctgccaccttcacagcttgcaaagaaaattggtggtgtcaag Alignment from Exonerate_protein2genome AAACCCAGATGGAGACCACAAACCCTGGTGTTTCGTCAAGGTGAACAGTGAGAAGGTGAAATGGGAATACTGTGATGTCACAGTCTGTCCAGTGCCTG aataatgcgaatgtgaccctctggtgatatattttcccaatttctttcagGAATGAGGATGGAGACCACAAACTCTGGTGTTCAGTCAAGGTGAACAGTGAGAAGGTTAAATGGGAGTACTGTGATGTCACTGTCTGTCCAGTGCCTGgtattgttctgccaccttcacagcttgcaaagaaaattggtggtgtcaag Alignment from Exonerate_coding2genome AAACCCAGATGGAGACCACAAACCCTGGTGTTTCGTCAAGGTGAACAGTGAGAAGGTGAAATGGGAATACTGTGATGTCACAGTCTGTCCAGTGCCTG aataatgcgaatgtgaccctctggtgatatattttcccaatttctttcagGAATGAGGATGGAGACCACAAACTCTGGTGTTCAGTCAAGGTGAACAGTGAGAAGGTTAAATGGGAGTACTGTGATGTCACTGTCTGTCCAGTGCCTGgtattgttctgccaccttcacagcttgcaaagaaaattggtggtgtcaag Alignment from GeneWise AAACCCAGATGGAGACCACAAACCCTGGTGTTTCGTCAAGGTGAACAGTGAGAAGGTGAAATGGGAATACTGTGATGTCACAGTCTGTCCAGTGCCTG aataatgcgaatgtgaccctctggtgatatattttcccaatttctttcagGAATGAGGATGGAGACCACAAACTCTGGTGTTCAGTCAAGGTGAACAGTGAGAAGGTTAAATGGGAGTACTGTGATGTCACTGTCTGTCCAGTGCCTGgtattgttctgccaccttcacagcttgcaaagaaaattggtggtgtcaag #### Hells_ID7698_5 --> 2 - 0 Original Alignment tcATGAAAAAGAAAAGAGGAAGAGAAGATGAATCTTATAATATTTCAGAGGTCATGTCAAAAGAG ataggtagagatctaatttatgctcatagacatgtttctctcacgtctagttATGAAGAAAAAAAGGGGGAGGGAAGATGAGCCTTACAATATCTCAGAGGTCATGTCAAAGGATgtgaggagtttttataatagattgaagtgctttttgagggactacaacaa Alignment from CESAR tcATGAAAAAGAAAAGAGGAAGAGAAGATGAATCTTATAATATTTCAGAGGTCATGTCAAAAGAG ataggtagagatctaatttatgctcatagacatgtttctctcacgtctagttATGAAGAAAAAAAGGGGGAGGGAAGATGAGCCTTACAATATCTCAGAGGTCATGTCAAAGGATgtgaggagtttttataatagattgaagtgctttttgagggactacaacaa Alignment from Spaln_aa2Genome TCATGAAAAAGAAAAGAGGAAGAGAAGATGAATCTTATAATATTTCAGAGGTCATGTCAAAAGAG ataggtagagatctaatttatgctcatagacatgtttctctcacgtctagTTATGAAGAAAAAAAGGGGGAGGGAAGATGAGCCTTACAATATCTCAGAGGTCATGTCAAAGGATgtgaggagtttttataatagattgaagtgctttttgagggactacaacaa Alignment from Spaln_nt2Genome TCATGAAAAAGAAAAGAGGAAGAGAAGATGAATCTTATAATATTTCAGAGGTCATGTCAAAAGAG ataggtagagatctaatttatgctcatagacatgtttctctcacgtctagTTATGAAGAAAAAAAGGGGGAGGGAAGATGAGCCTTACAATATCTCAGAGGTCATGTCAAAGGATgtgaggagtttttataatagattgaagtgctttttgagggactacaacaa Alignment from Pairagon TCATGAAAAAGAAAAGAGGAAGAGAAGATGAATCTTATAATATTTCAGAGGTCATGTCAAAAGAG ataggtagagatctaatttatgctcatagacatgtttctctcacgtctagTTATGAAGAAAAAAAGGGGGAGGGAAGATGAGCCTTACAATATCTCAGAGGTCATGTCAAAGGATgtgaggagtttttataatagattgaagtgctttttgagggactacaacaa Alignment from Exonerate_protein2genome TCATGAAAAAGAAAAGAGGAAGAGAAGATGAATCTTATAATATTTCAGAGGTCATGTCAAAAGAG ataggtagagatctaatttatgctcatagacatgtttctctcacgtctagTTATGAAGAAAAAAAGGGGGAGGGAAGATGAGCCTTACAATATCTCAGAGGTCATGTCAAAGGATgtgaggagtttttataatagattgaagtgctttttgagggactacaacaa Alignment from Exonerate_coding2genome TCATGAAAAAGAAAAGAGGAAGAGAAGATGAATCTTATAATATTTCAGAGGTCATGTCAAAAGAG ataggtagagatctaatttatgctcatagacatgtttctctcacgtctagTTATGAAGAAAAAAAGGGGGAGGGAAGATGAGCCTTACAATATCTCAGAGGTCATGTCAAAGGATgtgaggagtttttataatagattgaagtgctttttgagggactacaacaa Alignment from GeneWise TCATGAAAAAGAAAAGAGGAAGAGAAGATGAATCTTATAATATTTCAGAGGTCATGTCAAAAGAG ataggtagagatctaatttatgctcatagacatgtttctctcacgtctagTTATGAAGAAAAAAAGGGGGAGGGAAGATGAGCCTTACAATATCTCAGAGGTCATGTCAAAGGATgtgaggagtttttataatagattgaagtgctttttgagggactacaacaa #### Hells_ID7699_6 --> 0 - 0 Original Alignment GAAATTTTGTCCGTAGCTAAAAAACATAAGGATAATGAG gtggcagttttgcatgtagaaattactatttgggtgtttttggcttgcagGAAATTTTGTCTGTGTCTAAAAAACATAAGGATAATGAGgtagacgacacttagacacttatcctaaggttatggaaacatatgtgagc Alignment from CESAR GAAATTTTGTCCGTAGCTAAAAAACATAAGGATAATGAG gtggcagttttgcatgtagaaattactatttgggtgtttttggcttgcagGAAATTTTGTCTGTGTCTAAAAAACATAAGGATAATGAGgtagacgacacttagacacttatcctaaggttatggaaacatatgtgagc Alignment from Spaln_aa2Genome GAAATTTTGTCCGTAGCTAAAAAACATAAGGATAATGAG gtggcagttttgcatgtagaaattactatttgggtgtttttggcttgcagGAAATTTTGTCTGTGTCTAAAAAACATAAGGATAATGAGgtagacgacacttagacacttatcctaaggttatggaaacatatgtgagc Alignment from Spaln_nt2Genome GAAATTTTGTCCGTAGCTAAAAAACATAAGGATAATGAG gtggcagttttgcatgtagaaattactatttgggtgtttttggcttgcagGAAATTTTGTCTGTGTCTAAAAAACATAAGGATAATGAGgtagacgacacttagacacttatcctaaggttatggaaacatatgtgagc Alignment from Pairagon GAAATTTTGTCCGTAGCTAAAAAACATAAGGATAATGAG gtggcagttttgcatgtagaaattactatttgggtgtttttggcttgcagGAAATTTTGTCTGTGTCTAAAAAACATAAGGATAATGAGgtagacgacacttagacacttatcctaaggttatggaaacatatgtgagc Alignment from Exonerate_protein2genome GAAATTTTGTCCGTAGCTAAAAAACATAAGGATAATGAG gtggcagttttgcatgtagaaattactatttgggtgtttttggcttgcagGAAATTTTGTCTGTGTCTAAAAAACATAAGGATAATGAGgtagacgacacttagacacttatcctaaggttatggaaacatatgtgagc Alignment from Exonerate_coding2genome GAAATTTTGTCCGTAGCTAAAAAACATAAGGATAATGAG gtggcagttttgcatgtagaaattactatttgggtgtttttggcttgcagGAAATTTTGTCTGTGTCTAAAAAACATAAGGATAATGAGgtagacgacacttagacacttatcctaaggttatggaaacatatgtgagc Alignment from GeneWise GAAATTTTGTCCGTAGCTAAAAAACATAAGGATAATGAG gtggcagttttgcatgtagaaattactatttgggtgtttttggcttgcagGAAATTTTGTCTGTGTCTAAAAAACATAAGGATAATGAGgtagacgacacttagacacttatcctaaggttatggaaacatatgtgagc #### Hells_ID7703_10 --> 0 - 2 Original Alignment CATTGCTATTGGAAATACTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGCCGGCTAATCAGGGAGTTAAAACGGTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCCTTGCAAAACAATTTATCAGAACTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAag ttataaatcgttagatgggccgcataagctctctctccctctcctgttagCATTGCTATTGGAAATATTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGTCAGCTAATCAGGGAATTAAAGCGTTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCTTTGCAAAACAATTTATCAGAGCTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAaggtaattgcctgtcaaataaaataatgttccaatcatcctgcttattatag Alignment from CESAR CATTGCTATTGGAAATACTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGCCGGCTAATCAGGGAGTTAAAACGGTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCCTTGCAAAACAATTTATCAGAACTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAag ttataaatcgttagatgggccgcataagctctctctccctctcctgttagCATTGCTATTGGAAATATTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGTCAGCTAATCAGGGAATTAAAGCGTTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCTTTGCAAAACAATTTATCAGAGCTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAaggtaattgcctgtcaaataaaataatgttccaatcatcctgcttattatag Alignment from Spaln_aa2Genome CATTGCTATTGGAAATACTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGCCGGCTAATCAGGGAGTTAAAACGGTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCCTTGCAAAACAATTTATCAGAACTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAAG ttataaatcgttagatgggccgcataagctctctctccctctcctgttagCATTGCTATTGGAAATATTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGTCAGCTAATCAGGGAATTAAAGCGTTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCTTTGCAAAACAATTTATCAGAGCTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAAGgtaattgcctgtcaaataaaataatgttccaatcatcctgcttattatag Alignment from Spaln_nt2Genome CATTGCTATTGGAAATACTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGCCGGCTAATCAGGGAGTTAAAACGGTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCCTTGCAAAACAATTTATCAGAACTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAAG ttataaatcgttagatgggccgcataagctctctctccctctcctgttagCATTGCTATTGGAAATATTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGTCAGCTAATCAGGGAATTAAAGCGTTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCTTTGCAAAACAATTTATCAGAGCTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAAGgtaattgcctgtcaaataaaataatgttccaatcatcctgcttattatag Alignment from Pairagon CATTGCTATTGGAAATACTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGCCGGCTAATCAGGGAGTTAAAACGGTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCCTTGCAAAACAATTTATCAGAACTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAAG ttataaatcgttagatgggccgcataagctctctctccctctcctgttagCATTGCTATTGGAAATATTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGTCAGCTAATCAGGGAATTAAAGCGTTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCTTTGCAAAACAATTTATCAGAGCTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAAGgtaattgcctgtcaaataaaataatgttccaatcatcctgcttattatag Alignment from Exonerate_protein2genome CATTGCTATTGGAAATACTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGCCGGCTAATCAGGGAGTTAAAACGGTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCCTTGCAAAACAATTTATCAGAACTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAAG ttataaatcgttagatgggccgcataagctctctctccctctcctgttagCATTGCTATTGGAAATATTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGTCAGCTAATCAGGGAATTAAAGCGTTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCTTTGCAAAACAATTTATCAGAGCTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAAGgtaattgcctgtcaaataaaataatgttccaatcatcctgcttattatag Alignment from Exonerate_coding2genome CATTGCTATTGGAAATACTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGCCGGCTAATCAGGGAGTTAAAACGGTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCCTTGCAAAACAATTTATCAGAACTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAAG ttataaatcgttagatgggccgcataagctctctctccctctcctgttagCATTGCTATTGGAAATATTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGTCAGCTAATCAGGGAATTAAAGCGTTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCTTTGCAAAACAATTTATCAGAGCTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAAGgtaattgcctgtcaaataaaataatgttccaatcatcctgcttattatag Alignment from GeneWise CATTGCTATTGGAAATACTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGCCGGCTAATCAGGGAGTTAAAACGGTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCCTTGCAAAACAATTTATCAGAACTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAAG ttataaatcgttagatgggccgcataagctctctctccctctcctgttagCATTGCTATTGGAAATATTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGTCAGCTAATCAGGGAATTAAAGCGTTTCAATGCTGATAACAAACTTCTTTTGACTGGTACTCCTTTGCAAAACAATTTATCAGAGCTTTGGTCATTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAAGgtaattgcctgtcaaataaaataatgttccaatcatcctgcttattatag #### Hells_ID7708_15 --> 0 - 0 Original Alignment ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tcagtaattcaaaattctattgctgcaataaaagtttacatatattgcagAATGATGAAGAGTTTGTAACAAATTCTGGGAAGTTCTTGATTTCAGATCGAATGCTGCCAGAACTTAAGAAAAGAGGTCATAAGgtacgtatggctagaatttgtgctgtccagtgtaatatggatcagtctag Alignment from CESAR ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tcagtaattcaaaattctattgctgcaataaaagtttacatatattgcagAATGATGAAGAGTTTGTAACAAATTCTGGGAAGTTCTTGATTTCAGATCGAATGCTGCCAGAACTTAAGAAAAGAGGTCATAAGgtacgtatggctagaatttgtgctgtccagtgtaatatggatcagtctag Alignment from Spaln_aa2Genome ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tcagtaattcaaaattctattgctgcaataaaagtttacatatattgcagAATGATGAAGAGTTTGTAACAAATTCTGGGAAGTTCTTGATTTCAGATCGAATGCTGCCAGAACTTAAGAAAAGAGGTCATAAGgtacgtatggctagaatttgtgctgtccagtgtaatatggatcagtctag Alignment from Spaln_nt2Genome ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tcagtaattcaaaattctattgctgcaataaaagtttacatatattgcagAATGATGAAGAGTTTGTAACAAATTCTGGGAAGTTCTTGATTTCAGATCGAATGCTGCCAGAACTTAAGAAAAGAGGTCATAAGgtacgtatggctagaatttgtgctgtccagtgtaatatggatcagtctag Alignment from Pairagon ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tcagtaattcaaaattctattgctgcaataaaagtttacatatattgcagAATGATGAAGAGTTTGTAACAAATTCTGGGAAGTTCTTGATTTCAGATCGAATGCTGCCAGAACTTAAGAAAAGAGGTCATAAGgtacgtatggctagaatttgtgctgtccagtgtaatatggatcagtctag Alignment from Exonerate_protein2genome ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tcagtaattcaaaattctattgctgcaataaaagtttacatatattgcagAATGATGAAGAGTTTGTAACAAATTCTGGGAAGTTCTTGATTTCAGATCGAATGCTGCCAGAACTTAAGAAAAGAGGTCATAAGgtacgtatggctagaatttgtgctgtccagtgtaatatggatcagtctag Alignment from Exonerate_coding2genome ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tcagtaattcaaaattctattgctgcaataaaagtttacatatattgcagAATGATGAAGAGTTTGTAACAAATTCTGGGAAGTTCTTGATTTCAGATCGAATGCTGCCAGAACTTAAGAAAAGAGGTCATAAGgtacgtatggctagaatttgtgctgtccagtgtaatatggatcagtctag Alignment from GeneWise ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAGGTT----------------------------------------------- tcagtaattcaaaattctattgctgcaataaaagtttacatatattgcagAATGATGAAGAGTTTGTAACAAATTCTGGGAAGTTCTTGATTTCAGATCGAATGCTGCCAGAACTTAAGAAAAGAGGTCATAAGGTACGTATGGCTAGAATTTGTGCTGTCCAGTGTAATATGGATCAGTCTAG #### Hells_ID7711_18 --> 0 - 1 Original Alignment AATCCTCAGTCTGATCTCCAGGCTCAAGATAGATGTCATAGAATTGGTCAGACAAAGCCAGTTGTTGTGTATCGTCTTGTAACAGCAAATACTATTGACCAGAAAATTGTGGAAAGAGCAGCTGCTAAAAGAAAGTTGGAGAAGTTGATAATCCATAAAa gcttttttaacataacaatactattggactccaacctctgtgccctccagAATCCTCAGTCTGATCTCCAGGCTCAAGATAAATGTCATAGAATCGGTCAAACAAAGCCAGTTGCTGTGTATCGTCTTGTACCAGCAAACACTATTGAGCAGAAAATTGTGGAAAGGGCAGCTGCTAAAAGAAAGTTGGAGAAGTTGATAATCCATAAAagtatgtaagggctgatttgaccttaatggtaatcaccaggaatctgttcc Alignment from CESAR AATCCTCAGTCTGATCTCCAGGCTCAAGATAGATGTCATAGAATTGGTCAGACAAAGCCAGTTGTTGTGTATCGTCTTGTAACAGCAAATACTATTGACCAGAAAATTGTGGAAAGAGCAGCTGCTAAAAGAAAGTTGGAGAAGTTGATAATCCATAAAa gcttttttaacataacaatactattggactccaacctctgtgccctccagAATCCTCAGTCTGATCTCCAGGCTCAAGATAAATGTCATAGAATCGGTCAAACAAAGCCAGTTGCTGTGTATCGTCTTGTACCAGCAAACACTATTGAGCAGAAAATTGTGGAAAGGGCAGCTGCTAAAAGAAAGTTGGAGAAGTTGATAATCCATAAAagtatgtaagggctgatttgaccttaatggtaatcaccaggaatctgttcc Alignment from Spaln_aa2Genome AATCCTCAGTCTGATCTCCAGGCTCAAGATAGATGTCATAGAATTGGTCAGACAAAGCCAGTTGTTGTGTATCGTCTTGTAACAGCAAATACTATTGACCAGAAAATTGTGGAAAGAGCAGCTGCTAAAAGAAAGTTGGAGAAGTTGATAATCCATAAAA gcttttttaacataacaatactattggactccaacctctgtgccctccagAATCCTCAGTCTGATCTCCAGGCTCAAGATAAATGTCATAGAATCGGTCAAACAAAGCCAGTTGCTGTGTATCGTCTTGTACCAGCAAACACTATTGAGCAGAAAATTGTGGAAAGGGCAGCTGCTAAAAGAAAGTTGGAGAAGTTGATAATCCATAAAAgtatgtaagggctgatttgaccttaatggtaatcaccaggaatctgttcc Alignment from Spaln_nt2Genome AATCCTCAGTCTGATCTCCAGGCTCAAGATAGATGTCATAGAATTGGTCAGACAAAGCCAGTTGTTGTGTATCGTCTTGTAACAGCAAATACTATTGACCAGAAAATTGTGGAAAGAGCAGCTGCTAAAAGAAAGTTGGAGAAGTTGATAATCCATAAAA gcttttttaacataacaatactattggactccaacctctgtgccctccagAATCCTCAGTCTGATCTCCAGGCTCAAGATAAATGTCATAGAATCGGTCAAACAAAGCCAGTTGCTGTGTATCGTCTTGTACCAGCAAACACTATTGAGCAGAAAATTGTGGAAAGGGCAGCTGCTAAAAGAAAGTTGGAGAAGTTGATAATCCATAAAAgtatgtaagggctgatttgaccttaatggtaatcaccaggaatctgttcc Alignment from Pairagon AATCCTCAGTCTGATCTCCAGGCTCAAGATAGATGTCATAGAATTGGTCAGACAAAGCCAGTTGTTGTGTATCGTCTTGTAACAGCAAATACTATTGACCAGAAAATTGTGGAAAGAGCAGCTGCTAAAAGAAAGTTGGAGAAGTTGATAATCCATAAAA gcttttttaacataacaatactattggactccaacctctgtgccctccagAATCCTCAGTCTGATCTCCAGGCTCAAGATAAATGTCATAGAATCGGTCAAACAAAGCCAGTTGCTGTGTATCGTCTTGTACCAGCAAACACTATTGAGCAGAAAATTGTGGAAAGGGCAGCTGCTAAAAGAAAGTTGGAGAAGTTGATAATCCATAAAAgtatgtaagggctgatttgaccttaatggtaatcaccaggaatctgttcc Alignment from Exonerate_protein2genome AATCCTCAGTCTGATCTCCAGGCTCAAGATAGATGTCATAGAATTGGTCAGACAAAGCCAGTTGTTGTGTATCGTCTTGTAACAGCAAATACTATTGACCAGAAAATTGTGGAAAGAGCAGCTGCTAAAAGAAAGTTGGAGAAGTTGATAATCCATAAAA gcttttttaacataacaatactattggactccaacctctgtgccctccagAATCCTCAGTCTGATCTCCAGGCTCAAGATAAATGTCATAGAATCGGTCAAACAAAGCCAGTTGCTGTGTATCGTCTTGTACCAGCAAACACTATTGAGCAGAAAATTGTGGAAAGGGCAGCTGCTAAAAGAAAGTTGGAGAAGTTGATAATCCATAAAAgtatgtaagggctgatttgaccttaatggtaatcaccaggaatctgttcc Alignment from Exonerate_coding2genome AATCCTCAGTCTGATCTCCAGGCTCAAGATAGATGTCATAGAATTGGTCAGACAAAGCCAGTTGTTGTGTATCGTCTTGTAACAGCAAATACTATTGACCAGAAAATTGTGGAAAGAGCAGCTGCTAAAAGAAAGTTGGAGAAGTTGATAATCCATAAAA gcttttttaacataacaatactattggactccaacctctgtgccctccagAATCCTCAGTCTGATCTCCAGGCTCAAGATAAATGTCATAGAATCGGTCAAACAAAGCCAGTTGCTGTGTATCGTCTTGTACCAGCAAACACTATTGAGCAGAAAATTGTGGAAAGGGCAGCTGCTAAAAGAAAGTTGGAGAAGTTGATAATCCATAAAAgtatgtaagggctgatttgaccttaatggtaatcaccaggaatctgttcc Alignment from GeneWise AATCCTCAGTCTGATCTCCAGGCTCAAGATAGATGTCATAGAATTGGTCAGACAAAGCCAGTTGTTGTGTATCGTCTTGTAACAGCAAATACTATTGACCAGAAAATTGTGGAAAGAGCAGCTGCTAAAAGAAAGTTGGAGAAGTTGATAATCCATAAAA gcttttttaacataacaatactattggactccaacctctgtgccctccagAATCCTCAGTCTGATCTCCAGGCTCAAGATAAATGTCATAGAATCGGTCAAACAAAGCCAGTTGCTGTGTATCGTCTTGTACCAGCAAACACTATTGAGCAGAAAATTGTGGAAAGGGCAGCTGCTAAAAGAAAGTTGGAGAAGTTGATAATCCATAAAAgtatgtaagggctgatttgaccttaatggtaatcaccaggaatctgttcc #### Hells_ID7712_19 --> 2 - 2 Original Alignment atCATTTCAAAGGTGGTCAGTCTGGGTTAAGTCAATCTAAGAATTTCTTAGATGCAAAGGAATTAATGGAGTTATTAAAATCTAGAGATTATGAAag ggttcatgaactacttttaagaaatttggactgccttcggtctgttttagatCATTTCGAGAGTGGAAAATCAGGACTGGGTCACTCTGAGAATTTTTTGGATGCAAGGGAATTAACAGAGTTATTAAAGTCTAGAGATTATGAAaggtaagtcagcatcataacacttataatggatgtgaggatttctgccactg Alignment from CESAR atCATTTCAAAGGTGGTCAGTCTGGGTTAAGTCAATCTAAGAATTTCTTAGATGCAAAGGAATTAATGGAGTTATTAAAATCTAGAGATTATGAAag ggttcatgaactacttttaagaaatttggactgccttcggtctgttttagatCATTTCGAGAGTGGAAAATCAGGACTGGGTCACTCTGAGAATTTTTTGGATGCAAGGGAATTAACAGAGTTATTAAAGTCTAGAGATTATGAAaggtaagtcagcatcataacacttataatggatgtgaggatttctgccactg Alignment from Spaln_aa2Genome ATCATTTCAAAGGTGGTCAGTCTGGGTTAAGTCAATCTAAGAATTTCTTAGATGCAAAGGAATTAATGGAGTTATTAAAATCTAGAGATTATGAAAG ggttcatgaactacttttaagaaatttggactgccttcggtctgttttagATCATTTCGAGAGTGGAAAATCAGGACTGGGTCACTCTGAGAATTTTTTGGATGCAAGGGAATTAACAGAGTTATTAAAGTCTAGAGATTATGAAAGgtaagtcagcatcataacacttataatggatgtgaggatttctgccactg Alignment from Spaln_nt2Genome ATCATTTCAAAGGTGGTCAGTCTGGGTTAAGTCAATCTAAGAATTTCTTAGATGCAAAGGAATTAATGGAGTTATTAAAATCTAGAGATTATGAAAG ggttcatgaactacttttaagaaatttggactgccttcggtctgttttagATCATTTCGAGAGTGGAAAATCAGGACTGGGTCACTCTGAGAATTTTTTGGATGCAAGGGAATTAACAGAGTTATTAAAGTCTAGAGATTATGAAAGgtaagtcagcatcataacacttataatggatgtgaggatttctgccactg Alignment from Pairagon ATCATTTCAAAGGTGGTCAGTCTGGGTTAAGTCAATCTAAGAATTTCTTAGATGCAAAGGAATTAATGGAGTTATTAAAATCTAGAGATTATGAAAG ggttcatgaactacttttaagaaatttggactgccttcggtctgttttagATCATTTCGAGAGTGGAAAATCAGGACTGGGTCACTCTGAGAATTTTTTGGATGCAAGGGAATTAACAGAGTTATTAAAGTCTAGAGATTATGAAAGgtaagtcagcatcataacacttataatggatgtgaggatttctgccactg Alignment from Exonerate_protein2genome ATCATTTCAAAGGTGGTCAGTCTGGGTTAAGTCAATCTAAGAATTTCTTAGATGCAAAGGAATTAATGGAGTTATTAAAATCTAGAGATTATGAAAG ggttcatgaactacttttaagaaatttggactgccttcggtctgttttagATCATTTCGAGAGTGGAAAATCAGGACTGGGTCACTCTGAGAATTTTTTGGATGCAAGGGAATTAACAGAGTTATTAAAGTCTAGAGATTATGAAAGgtaagtcagcatcataacacttataatggatgtgaggatttctgccactg Alignment from Exonerate_coding2genome ATCATTTCAAAGGTGGTCAGTCTGGGTTAAGTCAATCTAAGAATTTCTTAGATGCAAAGGAATTAATGGAGTTATTAAAATCTAGAGATTATGAAAG ggttcatgaactacttttaagaaatttggactgccttcggtctgttttagATCATTTCGAGAGTGGAAAATCAGGACTGGGTCACTCTGAGAATTTTTTGGATGCAAGGGAATTAACAGAGTTATTAAAGTCTAGAGATTATGAAAGgtaagtcagcatcataacacttataatggatgtgaggatttctgccactg Alignment from GeneWise ATCATTTCAAAGGTGGTCAGTCTGGGTTAAGTCAATCTAAGAATTTCTTAGATGCAAAGGAATTAATGGAGTTATTAAAATCTAGAGATTATGAAAG ggttcatgaactacttttaagaaatttggactgccttcggtctgttttagATCATTTCGAGAGTGGAAAATCAGGACTGGGTCACTCTGAGAATTTTTTGGATGCAAGGGAATTAACAGAGTTATTAAAGTCTAGAGATTATGAAAGgtaagtcagcatcataacacttataatggatgtgaggatttctgccactg #### Hhex_ID7338_3 --> 0 - 0 Original Alignment GTCAAAACCTGGTTTCAGAATCGCCGAGCTAAATGGAGAAGACTGAAACAG aattacaacactagaaactcctgtagtgtcacctgtgctttgtctttcagGTCAAAACCTGGTTTCAGAATCACCGAGCTAAATGGAGAAGATTGAAACAGgtgagcgtatactatagagaacaaatgttatagtgaaggcagatctctaa Alignment from CESAR GTCAAAACCTGGTTTCAGAATCGCCGAGCTAAATGGAGAAGACTGAAACAG aattacaacactagaaactcctgtagtgtcacctgtgctttgtctttcagGTCAAAACCTGGTTTCAGAATCACCGAGCTAAATGGAGAAGATTGAAACAGgtgagcgtatactatagagaacaaatgttatagtgaaggcagatctctaa Alignment from Spaln_aa2Genome GTCAAAACCTGGTTTCAGAATCGCCGAGCTAAATGGAGAAGACTGAAACAG aattacaacactagaaactcctgtagtgtcacctgtgctttgtctttcagGTCAAAACCTGGTTTCAGAATCACCGAGCTAAATGGAGAAGATTGAAACAGgtgagcgtatactatagagaacaaatgttatagtgaaggcagatctctaa Alignment from Spaln_nt2Genome GTCAAAACCTGGTTTCAGAATCGCCGAGCTAAATGGAGAAGACTGAAACAG aattacaacactagaaactcctgtagtgtcacctgtgctttgtctttcagGTCAAAACCTGGTTTCAGAATCACCGAGCTAAATGGAGAAGATTGAAACAGgtgagcgtatactatagagaacaaatgttatagtgaaggcagatctctaa Alignment from Pairagon GTCAAAACCTGGTTTCAGAATCGCCGAGCTAAATGGAGAAGACTGAAACAG aattacaacactagaaactcctgtagtgtcacctgtgctttgtctttcagGTCAAAACCTGGTTTCAGAATCACCGAGCTAAATGGAGAAGATTGAAACAGgtgagcgtatactatagagaacaaatgttatagtgaaggcagatctctaa Alignment from Exonerate_protein2genome GTCAAAACCTGGTTTCAGAATCGCCGAGCTAAATGGAGAAGACTGAAACAG aattacaacactagaaactcctgtagtgtcacctgtgctttgtctttcagGTCAAAACCTGGTTTCAGAATCACCGAGCTAAATGGAGAAGATTGAAACAGgtgagcgtatactatagagaacaaatgttatagtgaaggcagatctctaa Alignment from Exonerate_coding2genome GTCAAAACCTGGTTTCAGAATCGCCGAGCTAAATGGAGAAGACTGAAACAG aattacaacactagaaactcctgtagtgtcacctgtgctttgtctttcagGTCAAAACCTGGTTTCAGAATCACCGAGCTAAATGGAGAAGATTGAAACAGgtgagcgtatactatagagaacaaatgttatagtgaaggcagatctctaa Alignment from GeneWise GTCAAAACCTGGTTTCAGAATCGCCGAGCTAAATGGAGAAGACTGAAACAG aattacaacactagaaactcctgtagtgtcacctgtgctttgtctttcagGTCAAAACCTGGTTTCAGAATCACCGAGCTAAATGGAGAAGATTGAAACAGgtgagcgtatactatagagaacaaatgttatagtgaaggcagatctctaa #### Hif1an_ID9067_5 --> 0 - 2 Original Alignment GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACtg tagcgatctgaagtgagaactggatagtgaacttttattttgatgcttagGTGGACTTTGATAATCCAGACTATGAGAGGTTCCCCAATTTTCGAAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATCCCTATGTATtggtaggctgcaaatgaataaagggcagcacatgaataaagggcagtgctgt Alignment from CESAR GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACtg tagcgatctgaagtgagaactggatagtgaacttttattttgatgcttagGTGGACTTTGATAATCCAGACTATGAGAGGTTCCCCAATTTTCGAAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATCCCTATGTATtggtaggctgcaaatgaataaagggcagcacatgaataaagggcagtgctgt Alignment from Spaln_aa2Genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG tagcgatctgaagtgagaactggatagtgaacttttattttgatgcttagGTGGACTTTGATAATCCAGACTATGAGAGGTTCCCCAATTTTCGAAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATCCCTATGTATTGgtaggctgcaaatgaataaagggcagcacatgaataaagggcagtgctgt Alignment from Spaln_nt2Genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG tagcgatctgaagtgagaactggatagtgaacttttattttgatgcttagGTGGACTTTGATAATCCAGACTATGAGAGGTTCCCCAATTTTCGAAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATCCCTATGTATTGgtaggctgcaaatgaataaagggcagcacatgaataaagggcagtgctgt Alignment from Pairagon GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG tagcgatctgaagtgagaactggatagtgaacttttattttgatgcttagGTGGACTTTGATAATCCAGACTATGAGAGGTTCCCCAATTTTCGAAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATCCCTATGTATTGgtaggctgcaaatgaataaagggcagcacatgaataaagggcagtgctgt Alignment from Exonerate_protein2genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG tagcgatctgaagtgagaactggatagtgaacttttattttgatgcttagGTGGACTTTGATAATCCAGACTATGAGAGGTTCCCCAATTTTCGAAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATCCCTATGTATTGgtaggctgcaaatgaataaagggcagcacatgaataaagggcagtgctgt Alignment from Exonerate_coding2genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG tagcgatctgaagtgagaactggatagtgaacttttattttgatgcttagGTGGACTTTGATAATCCAGACTATGAGAGGTTCCCCAATTTTCGAAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATCCCTATGTATTGgtaggctgcaaatgaataaagggcagcacatgaataaagggcagtgctgt Alignment from GeneWise ATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG tagcgatctgaagtgagaactggatagtgaacttttattttgatgcttaggtggactttgataatccagAC------TATGAGAGGTTCCCCAATTTTCGAAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATCCCTATGTATTGgtaggctgcaaatgaataaagggcagcacatgaataaagggcagtgctgt #### Hnrnpul2_ID2403_7 --> 0 - 0 Original Alignment AATTTTGAGACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAAGACTTGGGTGTGGCATTCCGAATTAGCAAGGAGTCTCTGGCAGATCGAGCCCTTCTACCCCATGTCCTTTGCAAGAATTGTGTCGTAGAATTAAACTTTGGTCAGAAGGAGGAGCCCTTTTTCCCACCACCAGAAGAGTTTGTGTTCATCCATGCTGTGCCTGTTGAGGAACGTGTGCGGACTGCAGTCCCTCCCAAGACCATAGAGGAGTGTGAG agaatggtgtacattattggacatgtcaacaccttgtcatgttcctacagAATTTTGCAACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAGGACTTAGGTGTAGCATTCCGGATTAGCAAGGAATCCTTGGCAGATCGAGCTCTCCTACCTCATGTCCTTTGTAAGAACTGTGTTGTAGAATTAAATTTTGGTCAAAAGGGGGAGCCCTTTTTTCCACCACCAGAAGCATTTGTGTTCATCCACGCTGTGCCTGTTGAGGAACATGTGCGGACTGGTGTCCCCTCCAAGACCATAGAGGATTGTGAGgtgagtaagtgaacagctattaaactgtagaggaagtgggcgatgtacat Alignment from CESAR AATTTTGAGACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAAGACTTGGGTGTGGCATTCCGAATTAGCAAGGAGTCTCTGGCAGATCGAGCCCTTCTACCCCATGTCCTTTGCAAGAATTGTGTCGTAGAATTAAACTTTGGTCAGAAGGAGGAGCCCTTTTTCCCACCACCAGAAGAGTTTGTGTTCATCCATGCTGTGCCTGTTGAGGAACGTGTGCGGACTGCAGTCCCTCCCAAGACCATAGAGGAGTGTGAG agaatggtgtacattattggacatgtcaacaccttgtcatgttcctacagAATTTTGCAACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAGGACTTAGGTGTAGCATTCCGGATTAGCAAGGAATCCTTGGCAGATCGAGCTCTCCTACCTCATGTCCTTTGTAAGAACTGTGTTGTAGAATTAAATTTTGGTCAAAAGGGGGAGCCCTTTTTTCCACCACCAGAAGCATTTGTGTTCATCCACGCTGTGCCTGTTGAGGAACATGTGCGGACTGGTGTCCCCTCCAAGACCATAGAGGATTGTGAGgtgagtaagtgaacagctattaaactgtagaggaagtgggcgatgtacat Alignment from Spaln_aa2Genome AATTTTGAGACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAAGACTTGGGTGTGGCATTCCGAATTAGCAAGGAGTCTCTGGCAGATCGAGCCCTTCTACCCCATGTCCTTTGCAAGAATTGTGTCGTAGAATTAAACTTTGGTCAGAAGGAGGAGCCCTTTTTCCCACCACCAGAAGAGTTTGTGTTCATCCATGCTGTGCCTGTTGAGGAACGTGTGCGGACTGCAGTCCCTCCCAAGACCATAGAGGAGTGTGAG agaatggtgtacattattggacatgtcaacaccttgtcatgttcctacagAATTTTGCAACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAGGACTTAGGTGTAGCATTCCGGATTAGCAAGGAATCCTTGGCAGATCGAGCTCTCCTACCTCATGTCCTTTGTAAGAACTGTGTTGTAGAATTAAATTTTGGTCAAAAGGGGGAGCCCTTTTTTCCACCACCAGAAGCATTTGTGTTCATCCACGCTGTGCCTGTTGAGGAACATGTGCGGACTGGTGTCCCCTCCAAGACCATAGAGGATTGTGAGgtgagtaagtgaacagctattaaactgtagaggaagtgggcgatgtacat Alignment from Spaln_nt2Genome AATTTTGAGACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAAGACTTGGGTGTGGCATTCCGAATTAGCAAGGAGTCTCTGGCAGATCGAGCCCTTCTACCCCATGTCCTTTGCAAGAATTGTGTCGTAGAATTAAACTTTGGTCAGAAGGAGGAGCCCTTTTTCCCACCACCAGAAGAGTTTGTGTTCATCCATGCTGTGCCTGTTGAGGAACGTGTGCGGACTGCAGTCCCTCCCAAGACCATAGAGGAGTGTGAG agaatggtgtacattattggacatgtcaacaccttgtcatgttcctacagAATTTTGCAACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAGGACTTAGGTGTAGCATTCCGGATTAGCAAGGAATCCTTGGCAGATCGAGCTCTCCTACCTCATGTCCTTTGTAAGAACTGTGTTGTAGAATTAAATTTTGGTCAAAAGGGGGAGCCCTTTTTTCCACCACCAGAAGCATTTGTGTTCATCCACGCTGTGCCTGTTGAGGAACATGTGCGGACTGGTGTCCCCTCCAAGACCATAGAGGATTGTGAGgtgagtaagtgaacagctattaaactgtagaggaagtgggcgatgtacat Alignment from Pairagon AATTTTGAGACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAAGACTTGGGTGTGGCATTCCGAATTAGCAAGGAGTCTCTGGCAGATCGAGCCCTTCTACCCCATGTCCTTTGCAAGAATTGTGTCGTAGAATTAAACTTTGGTCAGAAGGAGGAGCCCTTTTTCCCACCACCAGAAGAGTTTGTGTTCATCCATGCTGTGCCTGTTGAGGAACGTGTGCGGACTGCAGTCCCTCCCAAGACCATAGAGGAGTGTGAG agaatggtgtacattattggacatgtcaacaccttgtcatgttcctacagAATTTTGCAACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAGGACTTAGGTGTAGCATTCCGGATTAGCAAGGAATCCTTGGCAGATCGAGCTCTCCTACCTCATGTCCTTTGTAAGAACTGTGTTGTAGAATTAAATTTTGGTCAAAAGGGGGAGCCCTTTTTTCCACCACCAGAAGCATTTGTGTTCATCCACGCTGTGCCTGTTGAGGAACATGTGCGGACTGGTGTCCCCTCCAAGACCATAGAGGATTGTGAGgtgagtaagtgaacagctattaaactgtagaggaagtgggcgatgtacat Alignment from Exonerate_protein2genome AATTTTGAGACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAAGACTTGGGTGTGGCATTCCGAATTAGCAAGGAGTCTCTGGCAGATCGAGCCCTTCTACCCCATGTCCTTTGCAAGAATTGTGTCGTAGAATTAAACTTTGGTCAGAAGGAGGAGCCCTTTTTCCCACCACCAGAAGAGTTTGTGTTCATCCATGCTGTGCCTGTTGAGGAACGTGTGCGGACTGCAGTCCCTCCCAAGACCATAGAGGAGTGTGAG agaatggtgtacattattggacatgtcaacaccttgtcatgttcctacagAATTTTGCAACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAGGACTTAGGTGTAGCATTCCGGATTAGCAAGGAATCCTTGGCAGATCGAGCTCTCCTACCTCATGTCCTTTGTAAGAACTGTGTTGTAGAATTAAATTTTGGTCAAAAGGGGGAGCCCTTTTTTCCACCACCAGAAGCATTTGTGTTCATCCACGCTGTGCCTGTTGAGGAACATGTGCGGACTGGTGTCCCCTCCAAGACCATAGAGGATTGTGAGgtgagtaagtgaacagctattaaactgtagaggaagtgggcgatgtacat Alignment from Exonerate_coding2genome AATTTTGAGACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAAGACTTGGGTGTGGCATTCCGAATTAGCAAGGAGTCTCTGGCAGATCGAGCCCTTCTACCCCATGTCCTTTGCAAGAATTGTGTCGTAGAATTAAACTTTGGTCAGAAGGAGGAGCCCTTTTTCCCACCACCAGAAGAGTTTGTGTTCATCCATGCTGTGCCTGTTGAGGAACGTGTGCGGACTGCAGTCCCTCCCAAGACCATAGAGGAGTGTGAG agaatggtgtacattattggacatgtcaacaccttgtcatgttcctacagAATTTTGCAACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAGGACTTAGGTGTAGCATTCCGGATTAGCAAGGAATCCTTGGCAGATCGAGCTCTCCTACCTCATGTCCTTTGTAAGAACTGTGTTGTAGAATTAAATTTTGGTCAAAAGGGGGAGCCCTTTTTTCCACCACCAGAAGCATTTGTGTTCATCCACGCTGTGCCTGTTGAGGAACATGTGCGGACTGGTGTCCCCTCCAAGACCATAGAGGATTGTGAGgtgagtaagtgaacagctattaaactgtagaggaagtgggcgatgtacat Alignment from GeneWise AATTTTGAGACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAAGACTTGGGTGTGGCATTCCGAATTAGCAAGGAGTCTCTGGCAGATCGAGCCCTTCTACCCCATGTCCTTTGCAAGAATTGTGTCGTAGAATTAAACTTTGGTCAGAAGGAGGAGCCCTTTTTCCCACCACCAGAAGAGTTTGTGTTCATCCATGCTGTGCCTGTTGAGGAACGTGTGCGGACTGCAGTCCCTCCCAAGACCATAGAGGAGTGTGAG agaatggtgtacattattggacatgtcaacaccttgtcatgttcctacagAATTTTGCAACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAGGACTTAGGTGTAGCATTCCGGATTAGCAAGGAATCCTTGGCAGATCGAGCTCTCCTACCTCATGTCCTTTGTAAGAACTGTGTTGTAGAATTAAATTTTGGTCAAAAGGGGGAGCCCTTTTTTCCACCACCAGAAGCATTTGTGTTCATCCACGCTGTGCCTGTTGAGGAACATGTGCGGACTGGTGTCCCCTCCAAGACCATAGAGGATTGTGAGgtgagtaagtgaacagctattaaactgtagaggaagtgggcgatgtacat #### Hnrnpul2_ID2408_12 --> 2 - 0 Original Alignment tgGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG caaattatttctttgtgaatctgcaatagcctcctgccgttcctccccagtgGGTGGGCAGCACCGAGGCTATGACAACCAGGCCTATGGGCAGCAGTACTGGGGGCAGCCTGGAACCAGAGGGgtgagtgcacacccttcttcactcctccctccaccctgtgaaggaattgg Alignment from CESAR tgGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG caaattatttctttgtgaatctgcaatagcctcctgccgttcctccccagtgGGTGGGCAGCACCGAGGCTATGACAACCAGGCCTATGGGCAGCAGTACTGGGGGCAGCCTGGAACCAGAGGGgtgagtgcacacccttcttcactcctccctccaccctgtgaaggaattgg Alignment from Spaln_aa2Genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG caaattatttctttgtgaatctgcaatagcctcctgccgttcctccccagTGGGTGGGCAGCACCGAGGCTATGACAACCAGGCCTATGGGCAGCAGTACTGGGGGCAGCCTGGAACCAGAGGGgtgagtgcacacccttcttcactcctccctccaccctgtgaaggaattgg Alignment from Spaln_nt2Genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG caaattatttctttgtgaatctgcaatagcctcctgccgttcctccccagTGGGTGGGCAGCACCGAGGCTATGACAACCAGGCCTATGGGCAGCAGTACTGGGGGCAGCCTGGAACCAGAGGGgtgagtgcacacccttcttcactcctccctccaccctgtgaaggaattgg Alignment from Pairagon TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG caaattatttctttgtgaatctgcaatagcctcctgccgttcctccccagTGGGTGGGCAGCACCGAGGCTATGACAACCAGGCCTATGGGCAGCAGTACTGGGGGCAGCCTGGAACCAGAGGGgtgagtgcacacccttcttcactcctccctccaccctgtgaaggaattgg Alignment from Exonerate_protein2genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG caaattatttctttgtgaatctgcaatagcctcctgccgttcctccccagTGGGTGGGCAGCACCGAGGCTATGACAACCAGGCCTATGGGCAGCAGTACTGGGGGCAGCCTGGAACCAGAGGGgtgagtgcacacccttcttcactcctccctccaccctgtgaaggaattgg Alignment from Exonerate_coding2genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG caaattatttctttgtgaatctgcaatagcctcctgccgttcctccccagTGGGTGGGCAGCACCGAGGCTATGACAACCAGGCCTATGGGCAGCAGTACTGGGGGCAGCCTGGAACCAGAGGGgtgagtgcacacccttcttcactcctccctccaccctgtgaaggaattgg Alignment from GeneWise TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG caaattatttctttgtgaatctgcaatagcctcctgccgttcctccccagTGGGTGGGCAGCACCGAGGCTATGACAACCAGGCCTATGGGCAGCAGTACTGGGGGCAGCCTGGAACCAGAGGGgtgagtgcacacccttcttcactcctccctccaccctgtgaaggaattgg #### Hnrnpul2_ID2409_13 --> 0 - 0 Original Alignment GGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGATTCTACAGTCGAGATTATGAGTACAACAGATACAGAGACTATTACAGACAATACAACCGGGAT taatcttaaatgcctataaagcattgaatttgtttttttctgtcctttagGGCTACCGCAATTTCTATGATCGATACAAGGGTGACTATGAACGATTCTATAGTCGGGATTACAAGTACAATAGATATAGGGGATATTATAGAGAATACAACCAAGATgttctattaggggatagagagcagaagaaaagtacaacaatccactagat Alignment from CESAR GGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGATTCTACAGTCGAGATTATGAGTACAACAGATACAGAGACTATTACAGACAATACAACCGGGAT taatcttaaatgcctataaagcattgaatttgtttttttctgtcctttagGGCTACCGCAATTTCTATGATCGATACAAGGGTGACTATGAACGATTCTATAGTCGGGATTACAAGTACAATAGATATAGGGGATATTATAGAGAATACAACCAAGATgttctattaggggatagagagcagaagaaaagtacaacaatccactagat Alignment from Spaln_aa2Genome GGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGATTCTACAGTCGAGATTATGAGTACAACAGATACAGAGACTATTACAGACAATACAACCGGGAT taatcttaaatgcctataaagcattgaatttgtttttttctgtcctttagGGCTACCGCAATTTCTATGATCGATACAAGGGTGACTATGAACGATTCTATAGTCGGGATTACAAGTACAATAGATATAGGGGATATTATAGAGAATACAACCAAGATgttctattaggggatagagagcagaagaaaagtacaacaatccactagat Alignment from Spaln_nt2Genome GGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGATTCTACAGTCGAGATTATGAGTACAACAGATACAGAGACTATTACAGACAATACAACCGGGAT taatcttaaatgcctataaagcattgaatttgtttttttctgtcctttagGGCTACCGCAATTTCTATGATCGATACAAGGGTGACTATGAACGATTCTATAGTCGGGATTACAAGTACAATAGATATAGGGGATATTATAGAGAATACAACCAAGATgttctattaggggatagagagcagaagaaaagtacaacaatccactagat Alignment from Pairagon GGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGATTCTACAGTCGAGATTATGAGTACAACAGATACAGAGACTATTACAGACAATACAACCGGGAT-------------------------------------------------- taatcttaaatgcctataaagcattgaatttgtttttttctgtcctttagGGCTACCGCAATTTCTATGATCGATACAAGGGTGACTATGAACGATTCTATAGTCGGGATTACAAGTACAATAGATATAGGGGATATTATAGAGAATACAACCAAGATGTTCTATTAGGGGATAGAGAGCAGAAGAAAAGTACAACAATCCACTAGAT Alignment from Exonerate_protein2genome GGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGATTCTACAGTCGAGATTATGAGTACAACAGATACAGAGACTATTACAGACAATACAACCGGGAT taatcttaaatgcctataaagcattgaatttgtttttttctgtcctttagGGCTACCGCAATTTCTATGATCGATACAAGGGTGACTATGAACGATTCTATAGTCGGGATTACAAGTACAATAGATATAGGGGATATTATAGAGAATACAACCAAGATgttctattaggggatagagagcagaagaaaagtacaacaatccactagat Alignment from Exonerate_coding2genome GGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGATTCTACAGTCGAGATTATGAGTACAACAGATACAGAGACTATTACAGACAATACAACCGGGAT taatcttaaatgcctataaagcattgaatttgtttttttctgtcctttagGGCTACCGCAATTTCTATGATCGATACAAGGGTGACTATGAACGATTCTATAGTCGGGATTACAAGTACAATAGATATAGGGGATATTATAGAGAATACAACCAAGATgttctattaggggatagagagcagaagaaaagtacaacaatccactagat Alignment from GeneWise GGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGATTCTACAGTCGAGATTATGAGTACAACAGATACAGAGACTATTACAGACAATACAACCGGGAT taatcttaaatgcctataaagcattgaatttgtttttttctgtcctttagGGCTACCGCAATTTCTATGATCGATACAAGGGTGACTATGAACGATTCTATAGTCGGGATTACAAGTACAATAGATATAGGGGATATTATAGAGAATACAACCAAGATgttctattaggggatagagagcagaagaaaagtacaacaatccactagat #### Hoga1_ID8380_3 --> 2 - 0 Original Alignment ccACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggaaatagacctatccaattgtggttgcctctcttttcactacttgcagccATGCAAGCTACAGTAGAGATGACTGTTAGCATGGCCCAGGTCGGTGCTGATGTGGCCATGGTGGTGACTCCATGTTACTATCATGGCCATATGAGCAGTGCAGCAATTATTCACCACTACACTAAGgtaagaaggaatggttgaaatgtgctgtagatcttgattggaggaagcta Alignment from CESAR ccACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggaaatagacctatccaattgtggttgcctctcttttcactacttgcagccATGCAAGCTACAGTAGAGATGACTGTTAGCATGGCCCAGGTCGGTGCTGATGTGGCCATGGTGGTGACTCCATGTTACTATCATGGCCATATGAGCAGTGCAGCAATTATTCACCACTACACTAAGgtaagaaggaatggttgaaatgtgctgtagatcttgattggaggaagcta Alignment from Spaln_aa2Genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggaaatagacctatccaattgtggttgcctctcttttcactacttgcagCCATGCAAGCTACAGTAGAGATGACTGTTAGCATGGCCCAGGTCGGTGCTGATGTGGCCATGGTGGTGACTCCATGTTACTATCATGGCCATATGAGCAGTGCAGCAATTATTCACCACTACACTAAGgtaagaaggaatggttgaaatgtgctgtagatcttgattggaggaagcta Alignment from Spaln_nt2Genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggaaatagacctatccaattgtggttgcctctcttttcactacttgcagCCATGCAAGCTACAGTAGAGATGACTGTTAGCATGGCCCAGGTCGGTGCTGATGTGGCCATGGTGGTGACTCCATGTTACTATCATGGCCATATGAGCAGTGCAGCAATTATTCACCACTACACTAAGgtaagaaggaatggttgaaatgtgctgtagatcttgattggaggaagcta Alignment from Pairagon CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggaaatagacctatccaattgtggttgcctctcttttcactacttgcagCCATGCAAGCTACAGTAGAGATGACTGTTAGCATGGCCCAGGTCGGTGCTGATGTGGCCATGGTGGTGACTCCATGTTACTATCATGGCCATATGAGCAGTGCAGCAATTATTCACCACTACACTAAGgtaagaaggaatggttgaaatgtgctgtagatcttgattggaggaagcta Alignment from Exonerate_protein2genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggaaatagacctatccaattgtggttgcctctcttttcactacttgcagCCATGCAAGCTACAGTAGAGATGACTGTTAGCATGGCCCAGGTCGGTGCTGATGTGGCCATGGTGGTGACTCCATGTTACTATCATGGCCATATGAGCAGTGCAGCAATTATTCACCACTACACTAAGgtaagaaggaatggttgaaatgtgctgtagatcttgattggaggaagcta Alignment from Exonerate_coding2genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggaaatagacctatccaattgtggttgcctctcttttcactacttgcagCCATGCAAGCTACAGTAGAGATGACTGTTAGCATGGCCCAGGTCGGTGCTGATGTGGCCATGGTGGTGACTCCATGTTACTATCATGGCCATATGAGCAGTGCAGCAATTATTCACCACTACACTAAGgtaagaaggaatggttgaaatgtgctgtagatcttgattggaggaagcta Alignment from GeneWise CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggaaatagacctatccaattgtggttgcctctcttttcactacttgcagCCATGCAAGCTACAGTAGAGATGACTGTTAGCATGGCCCAGGTCGGTGCTGATGTGGCCATGGTGGTGACTCCATGTTACTATCATGGCCATATGAGCAGTGCAGCAATTATTCACCACTACACTAAGgtaagaaggaatggttgaaatgtgctgtagatcttgattggaggaagcta #### Hps1_ID8611_17 --> 0 - 2 Original Alignment GGATACAAA---CTGCAGATGATTGAGGTGCCTGTCCTCTCGGATGACTCCGTCCCCATTGGCGTGCTGGGAGGTGACTACTACag accataacttctataggaccaacttctatatcaactgaacacattttcagGGATACATGAAAGTGCAGATCATTGATGTTCCAGTCCTCTCAGATGACTCCATACCCACTGGGGTTTTGGGAGGAGACTACTACaggtaagtcccctggagccacctcttggtaggtgggactttgttctagatgt Alignment from CESAR GGATAC---AAACTGCAGATGATTGAGGTGCCTGTCCTCTCGGATGACTCCGTCCCCATTGGCGTGCTGGGAGGTGACTACTACag accataacttctataggaccaacttctatatcaactgaacacattttcagGGATACATGAAAGTGCAGATCATTGATGTTCCAGTCCTCTCAGATGACTCCATACCCACTGGGGTTTTGGGAGGAGACTACTACaggtaagtcccctggagccacctcttggtaggtgggactttgttctagatgt Alignment from Spaln_aa2Genome GGATAC---AAACTGCAGATGATTGAGGTGCCTGTCCTCTCGGATGACTCCGTCCCCATTGGCGTGCTGGGAGGTGACTACTACAG accataacttctataggaccaacttctatatcaactgaacacattttcagGGATACATGAAAGTGCAGATCATTGATGTTCCAGTCCTCTCAGATGACTCCATACCCACTGGGGTTTTGGGAGGAGACTACTACAGgtaagtcccctggagccacctcttggtaggtgggactttgttctagatgt Alignment from Spaln_nt2Genome GGATACA---AACTGCAGATGATTGAGGTGCCTGTCCTCTCGGATGACTCCGTCCCCATTGGCGTGCTGGGAGGTGACTACTACAG accataacttctataggaccaacttctatatcaactgaacacattttcagGGATACATGAAAGTGCAGATCATTGATGTTCCAGTCCTCTCAGATGACTCCATACCCACTGGGGTTTTGGGAGGAGACTACTACAGgtaagtcccctggagccacctcttggtaggtgggactttgttctagatgt Alignment from Pairagon GGATAC---AAACTGCAGATGATTGAGGTGCCTGTCCTCTCGGATGACTCCGTCCCCATTGGCGTGCTGGGAGGTGACTACTACAG accataacttctataggaccaacttctatatcaactgaacacattttcagGGATACATGAAAGTGCAGATCATTGATGTTCCAGTCCTCTCAGATGACTCCATACCCACTGGGGTTTTGGGAGGAGACTACTACAGgtaagtcccctggagccacctcttggtaggtgggactttgttctagatgt Alignment from Exonerate_protein2genome GGATAC---AAACTGCAGATGATTGAGGTGCCTGTCCTCTCGGATGACTCCGTCCCCATTGGCGTGCTGGGAGGTGACTACTACAG accataacttctataggaccaacttctatatcaactgaacacattttcagGGATACATGAAAGTGCAGATCATTGATGTTCCAGTCCTCTCAGATGACTCCATACCCACTGGGGTTTTGGGAGGAGACTACTACAGgtaagtcccctggagccacctcttggtaggtgggactttgttctagatgt Alignment from Exonerate_coding2genome GGATAC---AAACTGCAGATGATTGAGGTGCCTGTCCTCTCGGATGACTCCGTCCCCATTGGCGTGCTGGGAGGTGACTACTACAGG accataacttctataggaccaacttctatatcaactgaacacattttcagGGATACATGAAAGTGCAGATCATTGATGTTCCAGTCCTCTCAGATGACTCCATACCCACTGGGGTTTTGGGAGGAGACTACTACAGGtaagtcccctggagccacctcttggtaggtgggactttgttctagatgt Alignment from GeneWise GGATAC---AAACTGCAGATGATTGAGGTGCCTGTCCTCTCGGATGACTCCGTCCCCATTGGCGTGCTGGGAGGTGACTACTACAG accataacttctataggaccaacttctatatcaactgaacacattttcagGGATACATGAAAGTGCAGATCATTGATGTTCCAGTCCTCTCAGATGACTCCATACCCACTGGGGTTTTGGGAGGAGACTACTACAGgtaagtcccctggagccacctcttggtaggtgggactttgttctagatgt #### Hps1_ID8612_16 --> 0 - 0 Original Alignment GTCTGGGCTCTGGTCCGACTGGCGCGCAGGTACCTGCAGAAGGGCTGCACCACACTGCTGTTCCAGGAAGGGGACTTCCGCTGCTCCTACTTCCTGTGGTTCGAGAATGACATG tcttcaagaaatggcacccttgggaatacgcctacgttttcccctcacagGTCTGGGCTTTGGTCCGACTGGCACGCAGGTGCCTGCAGAAAGGTTGCACCACACTGCTGTTCCAGGAAGGGGACTTTCACTGCTCCTACTTCCTGTGGTTTGAGAATGATATGgtgagggtgtacagatatggtaggtgtgtacagcttcagggttggctaag Alignment from CESAR GTCTGGGCTCTGGTCCGACTGGCGCGCAGGTACCTGCAGAAGGGCTGCACCACACTGCTGTTCCAGGAAGGGGACTTCCGCTGCTCCTACTTCCTGTGGTTCGAGAATGACATG tcttcaagaaatggcacccttgggaatacgcctacgttttcccctcacagGTCTGGGCTTTGGTCCGACTGGCACGCAGGTGCCTGCAGAAAGGTTGCACCACACTGCTGTTCCAGGAAGGGGACTTTCACTGCTCCTACTTCCTGTGGTTTGAGAATGATATGgtgagggtgtacagatatggtaggtgtgtacagcttcagggttggctaag Alignment from Spaln_aa2Genome GTCTGGGCTCTGGTCCGACTGGCGCGCAGGTACCTGCAGAAGGGCTGCACCACACTGCTGTTCCAGGAAGGGGACTTCCGCTGCTCCTACTTCCTGTGGTTCGAGAATGACATG tcttcaagaaatggcacccttgggaatacgcctacgttttcccctcacagGTCTGGGCTTTGGTCCGACTGGCACGCAGGTGCCTGCAGAAAGGTTGCACCACACTGCTGTTCCAGGAAGGGGACTTTCACTGCTCCTACTTCCTGTGGTTTGAGAATGATATGgtgagggtgtacagatatggtaggtgtgtacagcttcagggttggctaag Alignment from Spaln_nt2Genome GTCTGGGCTCTGGTCCGACTGGCGCGCAGGTACCTGCAGAAGGGCTGCACCACACTGCTGTTCCAGGAAGGGGACTTCCGCTGCTCCTACTTCCTGTGGTTCGAGAATGACATG tcttcaagaaatggcacccttgggaatacgcctacgttttcccctcacagGTCTGGGCTTTGGTCCGACTGGCACGCAGGTGCCTGCAGAAAGGTTGCACCACACTGCTGTTCCAGGAAGGGGACTTTCACTGCTCCTACTTCCTGTGGTTTGAGAATGATATGgtgagggtgtacagatatggtaggtgtgtacagcttcagggttggctaag Alignment from Pairagon GTCTGGGCTCTGGTCCGACTGGCGCGCAGGTACCTGCAGAAGGGCTGCACCACACTGCTGTTCCAGGAAGGGGACTTCCGCTGCTCCTACTTCCTGTGGTTCGAGAATGACATG tcttcaagaaatggcacccttgggaatacgcctacgttttcccctcacagGTCTGGGCTTTGGTCCGACTGGCACGCAGGTGCCTGCAGAAAGGTTGCACCACACTGCTGTTCCAGGAAGGGGACTTTCACTGCTCCTACTTCCTGTGGTTTGAGAATGATATGgtgagggtgtacagatatggtaggtgtgtacagcttcagggttggctaag Alignment from Exonerate_protein2genome GTCTGGGCTCTGGTCCGACTGGCGCGCAGGTACCTGCAGAAGGGCTGCACCACACTGCTGTTCCAGGAAGGGGACTTCCGCTGCTCCTACTTCCTGTGGTTCGAGAATGACATG tcttcaagaaatggcacccttgggaatacgcctacgttttcccctcacagGTCTGGGCTTTGGTCCGACTGGCACGCAGGTGCCTGCAGAAAGGTTGCACCACACTGCTGTTCCAGGAAGGGGACTTTCACTGCTCCTACTTCCTGTGGTTTGAGAATGATATGgtgagggtgtacagatatggtaggtgtgtacagcttcagggttggctaag Alignment from Exonerate_coding2genome GTCTGGGCTCTGGTCCGACTGGCGCGCAGGTACCTGCAGAAGGGCTGCACCACACTGCTGTTCCAGGAAGGGGACTTCCGCTGCTCCTACTTCCTGTGGTTCGAGAATGACATG tcttcaagaaatggcacccttgggaatacgcctacgttttcccctcacagGTCTGGGCTTTGGTCCGACTGGCACGCAGGTGCCTGCAGAAAGGTTGCACCACACTGCTGTTCCAGGAAGGGGACTTTCACTGCTCCTACTTCCTGTGGTTTGAGAATGATATGgtgagggtgtacagatatggtaggtgtgtacagcttcagggttggctaag Alignment from GeneWise GTCTGGGCTCTGGTCCGACTGGCGCGCAGGTACCTGCAGAAGGGCTGCACCACACTGCTGTTCCAGGAAGGGGACTTCCGCTGCTCCTACTTCCTGTGGTTCGAGAATGACATG tcttcaagaaatggcacccttgggaatacgcctacgttttcccctcacagGTCTGGGCTTTGGTCCGACTGGCACGCAGGTGCCTGCAGAAAGGTTGCACCACACTGCTGTTCCAGGAAGGGGACTTTCACTGCTCCTACTTCCTGTGGTTTGAGAATGATATGgtgagggtgtacagatatggtaggtgtgtacagcttcagggttggctaag #### Hps1_ID8613_15 --> 1 - 0 Original Alignment cTACCTGGAGGATTTCCCAGGCCTGGTCCACTTCATCTATGTGGACCGTACAACCGGGCAGATGGTGGCCCCCTCTCTCAGCCCCAACGAAAAGATGTCTTCCGAGTTGGGCAAGGGGCCCCTGGCTGCCTTTGTCAAAGCCAAG gtagaggtagagagacttatcttaacatgtaattttccatttctttgcagcTACATAGAAGATTTCCCTAGCCTGGTCCACTCCATTTACGTTGACCGAACAACTGGCCAGATTGTGGCGCCATCCCTCAGTCCCAACGAGAGGATGTCTTCTGAGTTGGGCAAGGGGCCATTGGCTGCTTTTGTCAAAGCTAAAgtaagtattcccctgggcctgggggttttccccagtgagccatgaacaac Alignment from CESAR cTACCTGGAGGATTTCCCAGGCCTGGTCCACTTCATCTATGTGGACCGTACAACCGGGCAGATGGTGGCCCCCTCTCTCAGCCCCAACGAAAAGATGTCTTCCGAGTTGGGCAAGGGGCCCCTGGCTGCCTTTGTCAAAGCCAAG gtagaggtagagagacttatcttaacatgtaattttccatttctttgcagcTACATAGAAGATTTCCCTAGCCTGGTCCACTCCATTTACGTTGACCGAACAACTGGCCAGATTGTGGCGCCATCCCTCAGTCCCAACGAGAGGATGTCTTCTGAGTTGGGCAAGGGGCCATTGGCTGCTTTTGTCAAAGCTAAAgtaagtattcccctgggcctgggggttttccccagtgagccatgaacaac Alignment from Spaln_aa2Genome CTACCTGGAGGATTTCCCAGGCCTGGTCCACTTCATCTATGTGGACCGTACAACCGGGCAGATGGTGGCCCCCTCTCTCAGCCCCAACGAAAAGATGTCTTCCGAGTTGGGCAAGGGGCCCCTGGCTGCCTTTGTCAAAGCCAAG gtagaggtagagagacttatcttaacatgtaattttccatttctttgcagCTACATAGAAGATTTCCCTAGCCTGGTCCACTCCATTTACGTTGACCGAACAACTGGCCAGATTGTGGCGCCATCCCTCAGTCCCAACGAGAGGATGTCTTCTGAGTTGGGCAAGGGGCCATTGGCTGCTTTTGTCAAAGCTAAAgtaagtattcccctgggcctgggggttttccccagtgagccatgaacaac Alignment from Spaln_nt2Genome CTACCTGGAGGATTTCCCAGGCCTGGTCCACTTCATCTATGTGGACCGTACAACCGGGCAGATGGTGGCCCCCTCTCTCAGCCCCAACGAAAAGATGTCTTCCGAGTTGGGCAAGGGGCCCCTGGCTGCCTTTGTCAAAGCCAAG gtagaggtagagagacttatcttaacatgtaattttccatttctttgcagCTACATAGAAGATTTCCCTAGCCTGGTCCACTCCATTTACGTTGACCGAACAACTGGCCAGATTGTGGCGCCATCCCTCAGTCCCAACGAGAGGATGTCTTCTGAGTTGGGCAAGGGGCCATTGGCTGCTTTTGTCAAAGCTAAAgtaagtattcccctgggcctgggggttttccccagtgagccatgaacaac Alignment from Pairagon CTACCTGGAGGATTTCCCAGGCCTGGTCCACTTCATCTATGTGGACCGTACAACCGGGCAGATGGTGGCCCCCTCTCTCAGCCCCAACGAAAAGATGTCTTCCGAGTTGGGCAAGGGGCCCCTGGCTGCCTTTGTCAAAGCCAAG gtagaggtagagagacttatcttaacatgtaattttccatttctttgcagCTACATAGAAGATTTCCCTAGCCTGGTCCACTCCATTTACGTTGACCGAACAACTGGCCAGATTGTGGCGCCATCCCTCAGTCCCAACGAGAGGATGTCTTCTGAGTTGGGCAAGGGGCCATTGGCTGCTTTTGTCAAAGCTAAAgtaagtattcccctgggcctgggggttttccccagtgagccatgaacaac Alignment from Exonerate_protein2genome CTACCTGGAGGATTTCCCAGGCCTGGTCCACTTCATCTATGTGGACCGTACAACCGGGCAGATGGTGGCCCCCTCTCTCAGCCCCAACGAAAAGATGTCTTCCGAGTTGGGCAAGGGGCCCCTGGCTGCCTTTGTCAAAGCCAAG gtagaggtagagagacttatcttaacatgtaattttccatttctttgcagCTACATAGAAGATTTCCCTAGCCTGGTCCACTCCATTTACGTTGACCGAACAACTGGCCAGATTGTGGCGCCATCCCTCAGTCCCAACGAGAGGATGTCTTCTGAGTTGGGCAAGGGGCCATTGGCTGCTTTTGTCAAAGCTAAAgtaagtattcccctgggcctgggggttttccccagtgagccatgaacaac Alignment from Exonerate_coding2genome CTACCTGGAGGATTTCCCAGGCCTGGTCCACTTCATCTATGTGGACCGTACAACCGGGCAGATGGTGGCCCCCTCTCTCAGCCCCAACGAAAAGATGTCTTCCGAGTTGGGCAAGGGGCCCCTGGCTGCCTTTGTCAAAGCCAAG gtagaggtagagagacttatcttaacatgtaattttccatttctttgcagCTACATAGAAGATTTCCCTAGCCTGGTCCACTCCATTTACGTTGACCGAACAACTGGCCAGATTGTGGCGCCATCCCTCAGTCCCAACGAGAGGATGTCTTCTGAGTTGGGCAAGGGGCCATTGGCTGCTTTTGTCAAAGCTAAAgtaagtattcccctgggcctgggggttttccccagtgagccatgaacaac Alignment from GeneWise CTACCTGGAGGATTTCCCAGGCCTGGTCCACTTCATCTATGTGGACCGTACAACCGGGCAGATGGTGGCCCCCTCTCTCAGCCCCAACGAAAAGATGTCTTCCGAGTTGGGCAAGGGGCCCCTGGCTGCCTTTGTCAAAGCCAAG gtagaggtagagagacttatcttaacatgtaattttccatttctttgcagCTACATAGAAGATTTCCCTAGCCTGGTCCACTCCATTTACGTTGACCGAACAACTGGCCAGATTGTGGCGCCATCCCTCAGTCCCAACGAGAGGATGTCTTCTGAGTTGGGCAAGGGGCCATTGGCTGCTTTTGTCAAAGCTAAAgtaagtattcccctgggcctgggggttttccccagtgagccatgaacaac #### Hps1_ID8621_7 --> 0 - 0 Original Alignment AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA tgtgccatgctattctgctccgtcattagagccactttactttgcactagAGGCGTCCAAAGAGTAGCCAAAACATACCAGTGCCACAGGCCAGGAGCCAGAGTACCTCAGTACCTGCCAGGGGTTGTAAGGAGACAgtgagtcctaggctgtaagcaaaatagggtgtactctctgctttccctca Alignment from CESAR AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA tgtgccatgctattctgctccgtcattagagccactttactttgcactagAGGCGTCCAAAGAGTAGCCAAAACATACCAGTGCCACAGGCCAGGAGCCAGAGTACCTCAGTACCTGCCAGGGGTTGTAAGGAGACAgtgagtcctaggctgtaagcaaaatagggtgtactctctgctttccctca Alignment from Spaln_aa2Genome AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA tgtgccatgctattctgctccgtcattagagccactttactttgcactagAGGCGTCCAAAGAGTAGCCAAAACATACCAGTGCCACAGGCCAGGAGCCAGAGTACCTCAGTACCTGCCAGGGGTTGTAAGGAGACAgtgagtcctaggctgtaagcaaaatagggtgtactctctgctttccctca Alignment from Spaln_nt2Genome AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA tgtgccatgctattctgctccgtcattagagccactttactttgcactagAGGCGTCCAAAGAGTAGCCAAAACATACCAGTGCCACAGGCCAGGAGCCAGAGTACCTCAGTACCTGCCAGGGGTTGTAAGGAGACAgtgagtcctaggctgtaagcaaaatagggtgtactctctgctttccctca Alignment from Pairagon AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA tgtgccatgctattctgctccgtcattagagccactttactttgcactagAGGCGTCCAAAGAGTAGCCAAAACATACCAGTGCCACAGGCCAGGAGCCAGAGTACCTCAGTACCTGCCAGGGGTTGTAAGGAGACAgtgagtcctaggctgtaagcaaaatagggtgtactctctgctttccctca Alignment from Exonerate_protein2genome AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA tgtgccatgctattctgctccgtcattagagccactttactttgcactagAGGCGTCCAAAGAGTAGCCAAAACATACCAGTGCCACAGGCCAGGAGCCAGAGTACCTCAGTACCTGCCAGGGGTTGTAAGGAGACAgtgagtcctaggctgtaagcaaaatagggtgtactctctgctttccctca Alignment from Exonerate_coding2genome AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACAGACACAGACAGCATC------------TCCCTCCCTGAAGAGTACTTCAC tgtgccatgctattctgctccgtcattagagccactttactttgcactagAGGCGTCCAAAGAGTAGCCAAAACATACCAGTGCCACAGGCCAGGAGCCAGAGTACCTCAGTACCTGCCAGGGGTTGTAAGGAGACAGTGAGTCCTAGGCTGTAAGCAAAATAGGGTGTACTCTCTGCTTTCCCTCA Alignment from GeneWise AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA tgtgccatgctattctgctccgtcattagagccactttactttgcactagAGGCGTCCAAAGAGTAGCCAAAACATACCAGTGCCACAGGCCAGGAGCCAGAGTACCTCAGTACCTGCCAGGGGTTGTAAGGAGACAgtgagtcctaggctgtaagcaaaatagggtgtactctctgctttccctca #### Hpse2_ID8679_6 --> 1 - 2 Original Alignment aTTCATGAAGGTGGCAGGAAGCACAGTGGATGCGGTTACCTGGCAAca atgtgatcttttttttcaagtatttttccaagtttgcactgtctttccagaTTCATGAGAGTGGCAGGAAGCACATTGGATGCTGTTACCTGGCAAcagtatgttttcttacacactagtatctcatcagtaaacgctaaatagaaaa Alignment from CESAR aTTCATGAAGGTGGCAGGAAGCACAGTGGATGCGGTTACCTGGCAAca atgtgatcttttttttcaagtatttttccaagtttgcactgtctttccagaTTCATGAGAGTGGCAGGAAGCACATTGGATGCTGTTACCTGGCAAcagtatgttttcttacacactagtatctcatcagtaaacgctaaatagaaaa Alignment from Spaln_aa2Genome ATTCATGAAGGTGGCAGGAAGCACAGTGGATGCGGTTACCTGGCAACA atgtgatcttttttttcaagtatttttccaagtttgcactgtctttccagATTCATGAGAGTGGCAGGAAGCACATTGGATGCTGTTACCTGGCAACAgtatgttttcttacacactagtatctcatcagtaaacgctaaatagaaaa Alignment from Spaln_nt2Genome ATTCATGAAGGTGGCAGGAAGCACAGTGGATGCGGTTACCTGGCAACA atgtgatcttttttttcaagtatttttccaagtttgcactgtctttccagATTCATGAGAGTGGCAGGAAGCACATTGGATGCTGTTACCTGGCAACAgtatgttttcttacacactagtatctcatcagtaaacgctaaatagaaaa Alignment from Pairagon ATTCATGAAGGTGGCAGGAAGCACAGTGGATGCGGTTACCTGGCAACA atgtgatcttttttttcaagtatttttccaagtttgcactgtctttccagATTCATGAGAGTGGCAGGAAGCACATTGGATGCTGTTACCTGGCAACAgtatgttttcttacacactagtatctcatcagtaaacgctaaatagaaaa Alignment from Exonerate_protein2genome ATTCATGAAGGTGGCAGGAAGCACAGTGGATGCGGTTACCTGGCAACA atgtgatcttttttttcaagtatttttccaagtttgcactgtctttccagATTCATGAGAGTGGCAGGAAGCACATTGGATGCTGTTACCTGGCAACAgtatgttttcttacacactagtatctcatcagtaaacgctaaatagaaaa Alignment from Exonerate_coding2genome ATTCATGAAGGTGGCAGGAAGCACAGTGGATGCGGTTACCTGGCAACA atgtgatcttttttttcaagtatttttccaagtttgcactgtctttccagATTCATGAGAGTGGCAGGAAGCACATTGGATGCTGTTACCTGGCAACAgtatgttttcttacacactagtatctcatcagtaaacgctaaatagaaaa Alignment from GeneWise ATTCATGAAGGTGGCAGGAAGCACAGTGGATGCGGTTACCTGGCAACA atgtgatcttttttttcaagtatttttccaagtttgcactgtctttccagATTCATGAGAGTGGCAGGAAGCACATTGGATGCTGTTACCTGGCAACAgtatgttttcttacacactagtatctcatcagtaaacgctaaatagaaaa #### Hpse2_ID8710_3 --> 2 - 1 Original Alignment acATTGTCCGGAGTGATGTTGCCTTGGACAAGCAGAAAGGCTGTAAGATTGCCCAGCACCCTGATGTCATGCTGGAGCTCCAGAGAGAGAAGGCATCGCAGATGCATCTGGTTCTTCTGAAGGAGCAATACTCCAATACTTACAGTAACCTCATATTAACAg aatgggcatgttggttagttgacattggtaaacgttcttcttgtttacagacATCGTACGGAGTGATGTTGCCTTGGACAAGCACAAAGGTTGTAAAATTGCTCAGCACCCTCATGTCATGCTGGAGTTCCAAAGAGAGGAGGCATCACAGATGCATCTGGTTCTTTTGAAGGAGCAATACTCCAATACATACAGTAACCTCTTATTAACAggtgagtttcaggtgttttgacctcagagatattgtatagagatgtcccaa Alignment from CESAR acATTGTCCGGAGTGATGTTGCCTTGGACAAGCAGAAAGGCTGTAAGATTGCCCAGCACCCTGATGTCATGCTGGAGCTCCAGAGAGAGAAGGCATCGCAGATGCATCTGGTTCTTCTGAAGGAGCAATACTCCAATACTTACAGTAACCTCATATTAACAg aatgggcatgttggttagttgacattggtaaacgttcttcttgtttacagacATCGTACGGAGTGATGTTGCCTTGGACAAGCACAAAGGTTGTAAAATTGCTCAGCACCCTCATGTCATGCTGGAGTTCCAAAGAGAGGAGGCATCACAGATGCATCTGGTTCTTTTGAAGGAGCAATACTCCAATACATACAGTAACCTCTTATTAACAggtgagtttcaggtgttttgacctcagagatattgtatagagatgtcccaa Alignment from Spaln_aa2Genome ACATTGTCCGGAGTGATGTTGCCTTGGACAAGCAGAAAGGCTGTAAGATTGCCCAGCACCCTGATGTCATGCTGGAGCTCCAGAGAGAGAAGGCATCGCAGATGCATCTGGTTCTTCTGAAGGAGCAATACTCCAATACTTACAGTAACCTCATATTAACAG aatgggcatgttggttagttgacattggtaaacgttcttcttgtttacagACATCGTACGGAGTGATGTTGCCTTGGACAAGCACAAAGGTTGTAAAATTGCTCAGCACCCTCATGTCATGCTGGAGTTCCAAAGAGAGGAGGCATCACAGATGCATCTGGTTCTTTTGAAGGAGCAATACTCCAATACATACAGTAACCTCTTATTAACAGgtgagtttcaggtgttttgacctcagagatattgtatagagatgtcccaa Alignment from Spaln_nt2Genome ACATTGTCCGGAGTGATGTTGCCTTGGACAAGCAGAAAGGCTGTAAGATTGCCCAGCACCCTGATGTCATGCTGGAGCTCCAGAGAGAGAAGGCATCGCAGATGCATCTGGTTCTTCTGAAGGAGCAATACTCCAATACTTACAGTAACCTCATATTAACAG aatgggcatgttggttagttgacattggtaaacgttcttcttgtttacagACATCGTACGGAGTGATGTTGCCTTGGACAAGCACAAAGGTTGTAAAATTGCTCAGCACCCTCATGTCATGCTGGAGTTCCAAAGAGAGGAGGCATCACAGATGCATCTGGTTCTTTTGAAGGAGCAATACTCCAATACATACAGTAACCTCTTATTAACAGgtgagtttcaggtgttttgacctcagagatattgtatagagatgtcccaa Alignment from Pairagon ACATTGTCCGGAGTGATGTTGCCTTGGACAAGCAGAAAGGCTGTAAGATTGCCCAGCACCCTGATGTCATGCTGGAGCTCCAGAGAGAGAAGGCATCGCAGATGCATCTGGTTCTTCTGAAGGAGCAATACTCCAATACTTACAGTAACCTCATATTAACAG aatgggcatgttggttagttgacattggtaaacgttcttcttgtttacagACATCGTACGGAGTGATGTTGCCTTGGACAAGCACAAAGGTTGTAAAATTGCTCAGCACCCTCATGTCATGCTGGAGTTCCAAAGAGAGGAGGCATCACAGATGCATCTGGTTCTTTTGAAGGAGCAATACTCCAATACATACAGTAACCTCTTATTAACAGgtgagtttcaggtgttttgacctcagagatattgtatagagatgtcccaa Alignment from Exonerate_protein2genome ACATTGTCCGGAGTGATGTTGCCTTGGACAAGCAGAAAGGCTGTAAGATTGCCCAGCACCCTGATGTCATGCTGGAGCTCCAGAGAGAGAAGGCATCGCAGATGCATCTGGTTCTTCTGAAGGAGCAATACTCCAATACTTACAGTAACCTCATATTAACAG aatgggcatgttggttagttgacattggtaaacgttcttcttgtttacagACATCGTACGGAGTGATGTTGCCTTGGACAAGCACAAAGGTTGTAAAATTGCTCAGCACCCTCATGTCATGCTGGAGTTCCAAAGAGAGGAGGCATCACAGATGCATCTGGTTCTTTTGAAGGAGCAATACTCCAATACATACAGTAACCTCTTATTAACAGgtgagtttcaggtgttttgacctcagagatattgtatagagatgtcccaa Alignment from Exonerate_coding2genome ACATTGTCCGGAGTGATGTTGCCTTGGACAAGCAGAAAGGCTGTAAGATTGCCCAGCACCCTGATGTCATGCTGGAGCTCCAGAGAGAGAAGGCATCGCAGATGCATCTGGTTCTTCTGAAGGAGCAATACTCCAATACTTACAGTAACCTCATATTAACAG aatgggcatgttggttagttgacattggtaaacgttcttcttgtttacagACATCGTACGGAGTGATGTTGCCTTGGACAAGCACAAAGGTTGTAAAATTGCTCAGCACCCTCATGTCATGCTGGAGTTCCAAAGAGAGGAGGCATCACAGATGCATCTGGTTCTTTTGAAGGAGCAATACTCCAATACATACAGTAACCTCTTATTAACAGgtgagtttcaggtgttttgacctcagagatattgtatagagatgtcccaa Alignment from GeneWise ACATTGTCCGGAGTGATGTTGCCTTGGACAAGCAGAAAGGCTGTAAGATTGCCCAGCACCCTGATGTCATGCTGGAGCTCCAGAGAGAGAAGGCATCGCAGATGCATCTGGTTCTTCTGAAGGAGCAATACTCCAATACTTACAGTAACCTCATATTAACAG aatgggcatgttggttagttgacattggtaaacgttcttcttgtttacagACATCGTACGGAGTGATGTTGCCTTGGACAAGCACAAAGGTTGTAAAATTGCTCAGCACCCTCATGTCATGCTGGAGTTCCAAAGAGAGGAGGCATCACAGATGCATCTGGTTCTTTTGAAGGAGCAATACTCCAATACATACAGTAACCTCTTATTAACAGgtgagtttcaggtgttttgacctcagagatattgtatagagatgtcccaa #### Hrasls5_ID2196_2 --> 2 - 2 Original Alignment acTCAGCGAGTTCTCAAGCGCTGTTGGTCCAGTTCTTGCCGAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGgg agagcaggataggcccaaccaatttaggtcaacctgttttggggaaacagacTCAGCAGGTTCTCAAGCATTGTTCGTTCAGTTCTTGCCAAATCAACTCAAACAAGATCGTCAATTGGAACAGGCCCGTAGCTTCCAGCAAgggtgggtgtttctgaatattttagtagagataacagacttacggagagggc Alignment from CESAR acTCAGCGAGTTCTCAAGCGCTGTTGGTCCAGTTCTTGCCGAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGgg agagcaggataggcccaaccaatttaggtcaacctgttttggggaaacagacTCAGCAGGTTCTCAAGCATTGTTCGTTCAGTTCTTGCCAAATCAACTCAAACAAGATCGTCAATTGGAACAGGCCCGTAGCTTCCAGCAAgggtgggtgtttctgaatattttagtagagataacagacttacggagagggc Alignment from Spaln_aa2Genome ACTCAGCGAGTTCTCAAGCGCTGTTGGTCCAGTTCTTGCCGAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGGG agagcaggataggcccaaccaatttaggtcaacctgttttggggaaacagACTCAGCAGGTTCTCAAGCATTGTTCGTTCAGTTCTTGCCAAATCAACTCAAACAAGATCGTCAATTGGAACAGGCCCGTAGCTTCCAGCAAGGgtgggtgtttctgaatattttagtagagataacagacttacggagagggc Alignment from Spaln_nt2Genome ACTCAGCGAGTTCTCAAGCGCTGTTGGTCCAGTTCTTGCCGAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGGG agagcaggataggcccaaccaatttaggtcaacctgttttggggaaacagACTCAGCAGGTTCTCAAGCATTGTTCGTTCAGTTCTTGCCAAATCAACTCAAACAAGATCGTCAATTGGAACAGGCCCGTAGCTTCCAGCAAGGgtgggtgtttctgaatattttagtagagataacagacttacggagagggc Alignment from Pairagon ACTCAGCGAGTTCTCAAGCGCTGTTGGTCCAGTTCTTGCCGAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGGG agagcaggataggcccaaccaatttaggtcaacctgttttggggaaacagACTCAGCAGGTTCTCAAGCATTGTTCGTTCAGTTCTTGCCAAATCAACTCAAACAAGATCGTCAATTGGAACAGGCCCGTAGCTTCCAGCAAGGgtgggtgtttctgaatattttagtagagataacagacttacggagagggc Alignment from Exonerate_protein2genome ACTCAGCGAGTTCTCAAGCGCTGTTGGTCCAGTTCTTGCCGAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGGG agagcaggataggcccaaccaatttaggtcaacctgttttggggaaacagACTCAGCAGGTTCTCAAGCATTGTTCGTTCAGTTCTTGCCAAATCAACTCAAACAAGATCGTCAATTGGAACAGGCCCGTAGCTTCCAGCAAGGgtgggtgtttctgaatattttagtagagataacagacttacggagagggc Alignment from Exonerate_coding2genome ACTCAGCGAGTTCTCAAGCGCTGTTGGTCCAGTTCTTGCCGAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGGG agagcaggataggcccaaccaatttaggtcaacctgttttggggaaacagACTCAGCAGGTTCTCAAGCATTGTTCGTTCAGTTCTTGCCAAATCAACTCAAACAAGATCGTCAATTGGAACAGGCCCGTAGCTTCCAGCAAGGgtgggtgtttctgaatattttagtagagataacagacttacggagagggc Alignment from GeneWise ACTCAGCGAGTTCTCAAGCGCTGTTGGTCCAGTTCTTGCCGAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGGG agagcaggataggcccaaccaatttaggtcaacctgttttggggaaacagACTCAGCAGGTTCTCAAGCATTGTTCGTTCAGTTCTTGCCAAATCAACTCAAACAAGATCGTCAATTGGAACAGGCCCGTAGCTTCCAGCAAGGgtgggtgtttctgaatattttagtagagataacagacttacggagagggc #### Hspa12a_ID12806_9 --> 2 - 1 Original Alignment ggGACAAGTACGTGGTTGTTGACAGTGGCGGAGGCACAGTAGACCTGACCGTCCATCAGATACGGTTACCAGAGGGGCACCTCAAGGAGCTGTACAAAGCAACAg ccagcacatccacaatcatttaattgttcctgcccttttcttttctctagggGACAAATATGTAGTTGTTGACAGTGGGGGAGGCACAGTAGACCTGACTGTCCATCAGATACGGTTGCCAGAGAGGCACCTCAAGGAGCTGTACAAAGCAACAggtacacccatgccttacttttttccctgccctcctcatggtcattcatgt Alignment from CESAR ggGACAAGTACGTGGTTGTTGACAGTGGCGGAGGCACAGTAGACCTGACCGTCCATCAGATACGGTTACCAGAGGGGCACCTCAAGGAGCTGTACAAAGCAACAg ccagcacatccacaatcatttaattgttcctgcccttttcttttctctagggGACAAATATGTAGTTGTTGACAGTGGGGGAGGCACAGTAGACCTGACTGTCCATCAGATACGGTTGCCAGAGAGGCACCTCAAGGAGCTGTACAAAGCAACAggtacacccatgccttacttttttccctgccctcctcatggtcattcatgt Alignment from Spaln_aa2Genome GGGACAAGTACGTGGTTGTTGACAGTGGCGGAGGCACAGTAGACCTGACCGTCCATCAGATACGGTTACCAGAGGGGCACCTCAAGGAGCTGTACAAAGCAACAG ccagcacatccacaatcatttaattgttcctgcccttttcttttctctagGGGACAAATATGTAGTTGTTGACAGTGGGGGAGGCACAGTAGACCTGACTGTCCATCAGATACGGTTGCCAGAGAGGCACCTCAAGGAGCTGTACAAAGCAACAGgtacacccatgccttacttttttccctgccctcctcatggtcattcatgt Alignment from Spaln_nt2Genome GGGACAAGTACGTGGTTGTTGACAGTGGCGGAGGCACAGTAGACCTGACCGTCCATCAGATACGGTTACCAGAGGGGCACCTCAAGGAGCTGTACAAAGCAACAG ccagcacatccacaatcatttaattgttcctgcccttttcttttctctagGGGACAAATATGTAGTTGTTGACAGTGGGGGAGGCACAGTAGACCTGACTGTCCATCAGATACGGTTGCCAGAGAGGCACCTCAAGGAGCTGTACAAAGCAACAGgtacacccatgccttacttttttccctgccctcctcatggtcattcatgt Alignment from Pairagon GGGACAAGTACGTGGTTGTTGACAGTGGCGGAGGCACAGTAGACCTGACCGTCCATCAGATACGGTTACCAGAGGGGCACCTCAAGGAGCTGTACAAAGCAACAG ccagcacatccacaatcatttaattgttcctgcccttttcttttctctagGGGACAAATATGTAGTTGTTGACAGTGGGGGAGGCACAGTAGACCTGACTGTCCATCAGATACGGTTGCCAGAGAGGCACCTCAAGGAGCTGTACAAAGCAACAGgtacacccatgccttacttttttccctgccctcctcatggtcattcatgt Alignment from Exonerate_protein2genome GGGACAAGTACGTGGTTGTTGACAGTGGCGGAGGCACAGTAGACCTGACCGTCCATCAGATACGGTTACCAGAGGGGCACCTCAAGGAGCTGTACAAAGCAACAG ccagcacatccacaatcatttaattgttcctgcccttttcttttctctagGGGACAAATATGTAGTTGTTGACAGTGGGGGAGGCACAGTAGACCTGACTGTCCATCAGATACGGTTGCCAGAGAGGCACCTCAAGGAGCTGTACAAAGCAACAGgtacacccatgccttacttttttccctgccctcctcatggtcattcatgt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGGACAAGTACGTGGTTGTTGACAGTGGCGGAGGCACAGTAGACCTGACCGTCCATCAGATACGGTTACCAGAGGGGCACCTCAAGGAGCTGTACAAAGCAACAG ccagcacatccacaatcatttaattgttcctgcccttttcttttctctagGGGACAAATATGTAGTTGTTGACAGTGGGGGAGGCACAGTAGACCTGACTGTCCATCAGATACGGTTGCCAGAGAGGCACCTCAAGGAGCTGTACAAAGCAACAGgtacacccatgccttacttttttccctgccctcctcatggtcattcatgt #### Hspa12a_ID12810_5 --> 0 - 0 Original Alignment GACCTCACCATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTCGAGATCTTCGCTTACGCCCTGCAGTACTTCAAGGAGCAGGCTCTGAAG gaattttgcacattctagtccattgttatccccgctgcccgcccgcgcagGACCTCACAATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTTGAGATCTTCGCTTACGCCCTGCAGTACTTTAAGGAGCAGGCTCTAAAGgtaggttctaaggcagtcaactgatgatctttgatacttagcagtactga Alignment from CESAR GACCTCACCATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTCGAGATCTTCGCTTACGCCCTGCAGTACTTCAAGGAGCAGGCTCTGAAG gaattttgcacattctagtccattgttatccccgctgcccgcccgcgcagGACCTCACAATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTTGAGATCTTCGCTTACGCCCTGCAGTACTTTAAGGAGCAGGCTCTAAAGgtaggttctaaggcagtcaactgatgatctttgatacttagcagtactga Alignment from Spaln_aa2Genome GACCTCACCATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTCGAGATCTTCGCTTACGCCCTGCAGTACTTCAAGGAGCAGGCTCTGAAG gaattttgcacattctagtccattgttatccccgctgcccgcccgcgcagGACCTCACAATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTTGAGATCTTCGCTTACGCCCTGCAGTACTTTAAGGAGCAGGCTCTAAAGgtaggttctaaggcagtcaactgatgatctttgatacttagcagtactga Alignment from Spaln_nt2Genome GACCTCACCATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTCGAGATCTTCGCTTACGCCCTGCAGTACTTCAAGGAGCAGGCTCTGAAG gaattttgcacattctagtccattgttatccccgctgcccgcccgcgcagGACCTCACAATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTTGAGATCTTCGCTTACGCCCTGCAGTACTTTAAGGAGCAGGCTCTAAAGgtaggttctaaggcagtcaactgatgatctttgatacttagcagtactga Alignment from Pairagon GACCTCACCATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTCGAGATCTTCGCTTACGCCCTGCAGTACTTCAAGGAGCAGGCTCTGAAG gaattttgcacattctagtccattgttatccccgctgcccgcccgcgcagGACCTCACAATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTTGAGATCTTCGCTTACGCCCTGCAGTACTTTAAGGAGCAGGCTCTAAAGgtaggttctaaggcagtcaactgatgatctttgatacttagcagtactga Alignment from Exonerate_protein2genome GACCTCACCATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTCGAGATCTTCGCTTACGCCCTGCAGTACTTCAAGGAGCAGGCTCTGAAG gaattttgcacattctagtccattgttatccccgctgcccgcccgcgcagGACCTCACAATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTTGAGATCTTCGCTTACGCCCTGCAGTACTTTAAGGAGCAGGCTCTAAAGgtaggttctaaggcagtcaactgatgatctttgatacttagcagtactga Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GACCTCACCATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTCGAGATCTTCGCTTACGCCCTGCAGTACTTCAAGGAGCAGGCTCTGAAG gaattttgcacattctagtccattgttatccccgctgcccgcccgcgcagGACCTCACAATGGACACAGACTTAACAGCAGCAAATGGCAAGAAGGTCAAAGCCCTTGAGATCTTCGCTTACGCCCTGCAGTACTTTAAGGAGCAGGCTCTAAAGgtaggttctaaggcagtcaactgatgatctttgatacttagcagtactga #### Htr7_ID7073_2 --> 1 - 2 Original Alignment gTACCTTGGGATCACCAGGCCCCTCACGTACCCCGTGAGGCAGAATGGGAAATGTATGGCCAAAATGATTCTGTCGGTCTGGCTTCTCTCTGCCTCCATCACCTTACCTCCTCTCTTCGGATGGGCTCAGAATGTGAACGATGACAAAGTGTGCTTGATCAGCCAGGAT---------------------TTTGGCTACACGATCTACTCCACCGCAGTGGCGTTTTATATCCCCATGTCGGTCATGCTGTTCATGTACTATCAGATTTACAAGGCCGCCAGGAAGAGCGCAGCCAAACACAAGTTCTCAGGCTTCCCACGCGTGCAGCCGGAGAGCGTCATCTCCCTGAATGGCGTGGTGAAACTCCAGAAGGAGGTGGAAGAGTGTGCGAACCTTTCGAGACTGCTCAAACACGAAAGGAAAAACATTTCCATCTTCAAGAGGGAACAGAAAGCAGCCACTACCTTGGGGATCATCGTGGGAGCCTTCACGGTGTGCTGGCTGCCGTTTTTCCTCTTGTCCACAGCAAGGCCCTTTATCTGTGGCACCTCCTGTAGCTGCATCCCGCTGTGGGTGGAGAGGACATGTCTGTGGCTGGGCTATGCAAACTCTCTCATTAACCCTTTTATATATGCCTTCTTCAACCGGGACCTGAGGACCACCTATCGT---AGCCTACTCCAGTGCCAGTACCGGAATATCAACCGGAAGCTCTCTGCTGCAGGCATGCACGAAGCCCTGAAACTTGCTGAGAGGCCTGAGAGAAGCGAGTTTGTGct taaggagtgtccctccagtaaattgaagtcactgaaccccacctccacaggTACCTAGGGATCACCAGGCCTCTGATGCAGCCTGAAAGGCAGAATAGAAAATGTATG---------------------------GTCTCTGTTATAATCACCCTACCCCCTCTTTTTGGGTGGGCACTGAATGTCAACGATTACAAAGTGTGCTTAATCAGCCAAGACTTTGGATTGATGATATACTCC------TACAAAATATACTCTACTGCATTAGCATTCTATATCCCAATGCTAGTCATGTTGTTTATGTATTATCAT---TATAAAGCAGCCAAAAAGACCACAGCCAAGCATGAGTTCTCAGGGTTTCCACATGCACAGCCAGAAAGCATGATCTCCCTGAATGGTCTGGTGAAGCAGCAGAAGGAAGTGGAAGAATGTGCTAACCTTTCAAGACTGCTCAAACATGAAAGAAAGAATACTTCCATATTTAAGAGGCAACAGAAGGCAGCCACTAGCTTGGGAATCATCATTGGGACTTTCACAGTATGCTGGCTACCCTTTTTCTTCCTCTCCACAGCACGGTCCTTGATATGTGGCACCTCCTAC---TGTATCCCATTGTGGGTAGAAAGGACATGTCTGTGGCTGGGCTATGCAAACCCCCTCATAAACCCTTTTATACATGCTTTTTTCAACCAGGATTTAAGGACAATC---TACAGCAGCCTACTTCAGTGTCAGTATCGGAATATCAACCAGCCACTCTCAGCTGCGAGCATGCATGAAACACTTAAACTTGCCGAGAGGCCTGAGAGAAGTGAATTTGTGctgtaggttcaatattgctactttccccctattcttttgtgacacttctgag Alignment from CESAR gTACCTTGGGATCACCAGGCCCCTCACGTACCCCGTGAGGCAGAATGGGAAATGTATGGCCAAAATGATTCTGTCGGTCTGGCTTCTCTCTGCCTCCATCACCTTACCTCCTCTCTTCGGATGGGCTCAGAATGTGAACGATGACAAAGTGTGCTTGATCAGCCAGGATTTTGGC---------------TACACGATCTACTCCACCGCAGTGGCGTTTTATATCCCCATGTCGGTCATGCTGTTCATGTACTATCAGATTTACAAGGCCGCCAGGAAGAGCGCAGCCAAACACAAGTTCTCAGGCTTCCCACGCGTGCAGCCGGAGAGCGTCATCTCCCTGAATGGCGTGGTGAAACTCCAGAAGGAGGTGGAAGAGTGTGCGAACCTTTCGAGACTGCTCAAACACGAAAGGAAAAACATTTCCATCTTCAAGAGGGAACAGAAAGCAGCCACTACCTTGGGGATCATCGTGGGAGCCTTCACGGTGTGCTGGCTGCCGTTTTTCCTCTTGTCCACAGCAAGGCCCTTTATCTGTGGCACCTCCTGTAGCTGCATCCCGCTGTGGGTGGAGAGGACATGTCTGTGGCTGGGCTATGCAAACTCTCTCATTAACCCTTTTATATATGCCTTCTTCAACCGGGACCTGAGGACCACCTATCGTAGCCTACTCCAGTGCCAGTACCGGAATATCAACCGGAAGCTCTCTGCTGCAGGCATGCACGAAGCCCTGAAACTTGCTGAGAGGCCTGAGAGAAGCGAGTTTGTGct taaggagtgtccctccagtaaattgaagtcactgaaccccacctccacaggTACCTAGGGATCACCAGGCCTCTGATGCAGCCTGAAAGGCAGAATAGAAAATGTATGGTC---------------------------TCTGTTATAATCACCCTACCCCCTCTTTTTGGGTGGGCACTGAATGTCAACGATTACAAAGTGTGCTTAATCAGCCAAGACTTTGGATTGATGATATACTCCTACAAAATATACTCTACTGCATTAGCATTCTATATCCCAATGCTAGTCATGTTGTTTATGTATTATCAT---TATAAAGCAGCCAAAAAGACCACAGCCAAGCATGAGTTCTCAGGGTTTCCACATGCACAGCCAGAAAGCATGATCTCCCTGAATGGTCTGGTGAAGCAGCAGAAGGAAGTGGAAGAATGTGCTAACCTTTCAAGACTGCTCAAACATGAAAGAAAGAATACTTCCATATTTAAGAGGCAACAGAAGGCAGCCACTAGCTTGGGAATCATCATTGGGACTTTCACAGTATGCTGGCTACCCTTTTTCTTCCTCTCCACAGCACGGTCCTTGATATGTGGCACCTCCTAC---TGTATCCCATTGTGGGTAGAAAGGACATGTCTGTGGCTGGGCTATGCAAACCCCCTCATAAACCCTTTTATACATGCTTTTTTCAACCAGGATTTAAGGACAATCTACAGCAGCCTACTTCAGTGTCAGTATCGGAATATCAACCAGCCACTCTCAGCTGCGAGCATGCATGAAACACTTAAACTTGCCGAGAGGCCTGAGAGAAGTGAATTTGTGctgtaggttcaatattgctactttccccctattcttttgtgacacttctgag Alignment from Spaln_aa2Genome GTACCTTGGGATCACCAGGCCCCTCACGTACCCCGTGAGGCAGAATGGGAAATGTATGGCCAAAATGATTCTGTCGGTCTGGCTTCTCTCTGCCTCCATCACCTTACCTCCTCTCTTCGGATGGGCTCAGAATGTGAACGATGACAAAGTGTGCTTGATCAGCCAGGATTTTGGC---------------TACACGATCTACTCCACCGCAGTGGCGTTTTATATCCCCATGTCGGTCATGCTGTTCATGTACTATCAGATTTACAAGGCCGCCAGGAAGAGCGCAGCCAAACACAAGTTCTCAGGCTTCCCACGCGTGCAGCCGGAGAGCGTCATCTCCCTGAATGGCGTGGTGAAACTCCAGAAGGAGGTGGAAGAGTGTGCGAACCTTTCGAGACTGCTCAAACACGAAAGGAAAAACATTTCCATCTTCAAGAGGGAACAGAAAGCAGCCACTACCTTGGGGATCATCGTGGGAGCCTTCACGGTGTGCTGGCTGCCGTTTTTCCTCTTGTCCACAGCAAGGCCCTTTATCTGTGGCACCTCCTGTAGCTGCATCCCGCTGTGGGTGGAGAGGACATGTCTGTGGCTGGGCTATGCAAACTCTCTCATTAACCCTTTTATATATGCCTTCTTCAACCGGGACCTGAGGACCACCTATCGTAGCCTACTCCAGTGCCAGTACCGGAATATCAACCGGAAGCTCTCTGCTGCAGGCATGCACGAAGCCCTGAAACTTGCTGAGAGGCCTGAGAGAAGCGAGTTTGTGCT taaggagtgtccctccagtaaattgaagtcactgaaccccacctccacagGTACCTAGGGATCACCAGGCCTCTGATGCAGCCTGAAAGGCAGAATAGAAAATGTATGGTCTCTGTTATA---------------------------ATCACCCTACCCCCTCTTTTTGGGTGGGCACTGAATGTCAACGATTACAAAGTGTGCTTAATCAGCCAAGACTTTGGATTGATGATATACTCCTACAAAATATACTCTACTGCATTAGCATTCTATATCCCAATGCTAGTCATGTTGTTTATGTATTATCAT---TATAAAGCAGCCAAAAAGACCACAGCCAAGCATGAGTTCTCAGGGTTTCCACATGCACAGCCAGAAAGCATGATCTCCCTGAATGGTCTGGTGAAGCAGCAGAAGGAAGTGGAAGAATGTGCTAACCTTTCAAGACTGCTCAAACATGAAAGAAAGAATACTTCCATATTTAAGAGGCAACAGAAGGCAGCCACTAGCTTGGGAATCATCATTGGGACTTTCACAGTATGCTGGCTACCCTTTTTCTTCCTCTCCACAGCACGGTCCTTGATATGTGGCACCTCCTAC---TGTATCCCATTGTGGGTAGAAAGGACATGTCTGTGGCTGGGCTATGCAAACCCCCTCATAAACCCTTTTATACATGCTTTTTTCAACCAGGATTTAAGGACAATCTACAGCAGCCTACTTCAGTGTCAGTATCGGAATATCAACCAGCCACTCTCAGCTGCGAGCATGCATGAAACACTTAAACTTGCCGAGAGGCCTGAGAGAAGTGAATTTGTGCTgtaggttcaatattgctactttccccctattcttttgtgacacttctgag Alignment from Spaln_nt2Genome GTACCTTGGGATCACCAGGCCCCTCACGTACCCCGTGAGGCAGAATGGGAAATGTATGGCCAAAATGATTCTGTCGGTCTGGCTTCTCTCTGCCTCCATCACCTTACCTCCTCTCTTCGGATGGGCTCAGAATGTGAACGATGACAAAGTGTGCTTGATCAGCCAGGATTTTGG---------------CTACACGATCTACTCCACCGCAGTGGCGTTTTATATCCCCATGTCGGTCATGCTGTTCATGTACTATCAGATTTACAAGGCCGCCAGGAAGAGCGCAGCCAAACACAAGTTCTCAGGCTTCCCACGCGTGCAGCCGGAGAGCGTCATCTCCCTGAATGGCGTGGTGAAACTCCAGAAGGAGGTGGAAGAGTGTGCGAACCTTTCGAGACTGCTCAAACACGAAAGGAAAAACATTTCCATCTTCAAGAGGGAACAGAAAGCAGCCACTACCTTGGGGATCATCGTGGGAGCCTTCACGGTGTGCTGGCTGCCGTTTTTCCTCTTGTCCACAGCAAGGCCCTTTATCTGTGGCACCTCCTGTAGCTGCATCCCGCTGTGGGTGGAGAGGACATGTCTGTGGCTGGGCTATGCAAACTCTCTCATTAACCCTTTTATATATGCCTTCTTCAACCGGGACCTGAGGACCACCTATCGTAGCCTACTCCAGTGCCAGTACCGGAATATCAACCGGAAGCTCTCTGCTGCAGGCATGCACGAAGCCCTGAAACTTGCTGAGAGGCCTGAGAGAAGCGAGTTTGTGCT taaggagtgtccctccagtaaattgaagtcactgaaccccacctccacagGTACCTAGGGATCACCAGGCCTCTGATGCAGCCTGAAAGGCAGAATAGAAAATGTATGG---------------------------TCTCTGTTATAATCACCCTACCCCCTCTTTTTGGGTGGGCACTGAATGTCAACGATTACAAAGTGTGCTTAATCAGCCAAGACTTTGGATTGATGATATACTCCTACAAAATATACTCTACTGCATTAGCATTCTATATCCCAATGCTAGTCATGTTGTTTATGTATTATCA---TTATAAAGCAGCCAAAAAGACCACAGCCAAGCATGAGTTCTCAGGGTTTCCACATGCACAGCCAGAAAGCATGATCTCCCTGAATGGTCTGGTGAAGCAGCAGAAGGAAGTGGAAGAATGTGCTAACCTTTCAAGACTGCTCAAACATGAAAGAAAGAATACTTCCATATTTAAGAGGCAACAGAAGGCAGCCACTAGCTTGGGAATCATCATTGGGACTTTCACAGTATGCTGGCTACCCTTTTTCTTCCTCTCCACAGCACGGTCCTTGATATGTGGCACCTCCT---ACTGTATCCCATTGTGGGTAGAAAGGACATGTCTGTGGCTGGGCTATGCAAACCCCCTCATAAACCCTTTTATACATGCTTTTTTCAACCAGGATTTAAGGACAATCTACAGCAGCCTACTTCAGTGTCAGTATCGGAATATCAACCAGCCACTCTCAGCTGCGAGCATGCATGAAACACTTAAACTTGCCGAGAGGCCTGAGAGAAGTGAATTTGTGCTgtaggttcaatattgctactttccccctattcttttgtgacacttctgag Alignment from Pairagon GTACCTTGGGATCACCAGGCCCCTCACGTACCCCGTGAGGCAGAATGGGAAATGTATGGCCAAAATGATTCTGTCGGTCTGGCTTCTCTCTGCCTCCATCACCTTACCTCCTCTCTTCGGATGGGCTCAGAATGTGAACGATGACAAAGTGTGCTTGATCAGCCAGGATTTTGG---------------CTACACGATCTACTCCACCGCAGTGGCGTTTTATATCCCCATGTCGGTCATGCTGTTCATGTACTATCAGATTTACAAGGCCGCCAGGAAGAGCGCAGCCAAACACAAGTTCTCAGGCTTCCCACGCGTGCAGCCGGAGAGCGTCATCTCCCTGAATGGCGTGGTGAAACTCCAGAAGGAGGTGGAAGAGTGTGCGAACCTTTCGAGACTGCTCAAACACGAAAGGAAAAACATTTCCATCTTCAAGAGGGAACAGAAAGCAGCCACTACCTTGGGGATCATCGTGGGAGCCTTCACGGTGTGCTGGCTGCCGTTTTTCCTCTTGTCCACAGCAAGGCCCTTTATCTGTGGCACCTCCTGTAGCTGCATCCCGCTGTGGGTGGAGAGGACATGTCTGTGGCTGGGCTATGCAAACTCTCTCATTAACCCTTTTATATATGCCTTCTTCAACCGGGACCTGAGGACCACCTATCGTAGCCTACTCCAGTGCCAGTACCGGAATATCAACCGGAAGCTCTCTGCTGCAGGCATGCACGAAGCCCTGAAACTTGCTGAGAGGCCTGAGAGAAGCGAGTTTGTGCT taaggagtgtccctccagtaaattgaagtcactgaaccccacctccacagGTACCTAGGGATCACCAGGCCTCTGATGCAGCCTGAAAGGCAGAATAGAAAATGTATGG---------------------------TCTCTGTTATAATCACCCTACCCCCTCTTTTTGGGTGGGCACTGAATGTCAACGATTACAAAGTGTGCTTAATCAGCCAAGACTTTGGATTGATGATATACTCCTACAAAATATACTCTACTGCATTAGCATTCTATATCCCAATGCTAGTCATGTTGTTTATGTATTATCA---TTATAAAGCAGCCAAAAAGACCACAGCCAAGCATGAGTTCTCAGGGTTTCCACATGCACAGCCAGAAAGCATGATCTCCCTGAATGGTCTGGTGAAGCAGCAGAAGGAAGTGGAAGAATGTGCTAACCTTTCAAGACTGCTCAAACATGAAAGAAAGAATACTTCCATATTTAAGAGGCAACAGAAGGCAGCCACTAGCTTGGGAATCATCATTGGGACTTTCACAGTATGCTGGCTACCCTTTTTCTTCCTCTCCACAGCACGGTCCTTGATATGTGGCACCTCCT---ACTGTATCCCATTGTGGGTAGAAAGGACATGTCTGTGGCTGGGCTATGCAAACCCCCTCATAAACCCTTTTATACATGCTTTTTTCAACCAGGATTTAAGGACAATCTACAGCAGCCTACTTCAGTGTCAGTATCGGAATATCAACCAGCCACTCTCAGCTGCGAGCATGCATGAAACACTTAAACTTGCCGAGAGGCCTGAGAGAAGTGAATTTGTGCTgtaggttcaatattgctactttccccctattcttttgtgacacttctgag Alignment from Exonerate_protein2genome GATGGGCTCAGAATGTGAACGATGACAAAGTGTGCTTGATCAGCCAGGATTTTGGC---------------TACACGATCTACTCCACCGCAGTGGCGTTTTATATCCCCATGTCGGTCATGCTGTTCATGTACTATCAGATTTACAAGGCCGCCAGGAAGAGCGCAGCCAAACACAAGTTCTCAGGCTTCCCACGCGTGCAGCCGGAGAGCGTCATCTCCCTGAATGGCGTGGTGAAACTCCAGAAGGAGGTGGAAGAGTGTGCGAACCTTTCGAGACTGCTCAAACACGAAAGGAAAAACATTTCCATCTTCAAGAGGGAACAGAAAGCAGCCACTACCTTGGGGATCATCGTGGGAGCCTTCACGGTGTGCTGGCTGCCGTTTTTCCTCTTGTCCACAGCAAGGCCCTTTATCTGTGGCACCTCCTGTAGCTGCATCCCGCTGTGGGTGGAGAGGACATGTCTGTGGCTGGGCTATGCAAACTCTCTCATTAACCCTTTTATATATGCCTTCTTCAACCGGGACCTGAGGACCACCTATCGTAGCCTACTCCAGTGCCAGTACCGGAATATCAACCGGAAGCTCTCTGCTGCAGGCATGCACGAAGCCCTGAAACTTGCTGAGAGGCCTGAGAGAAGCGAGTTTGTGCT taaggagtgtccctccagtaaattgaagtcactgaaccccacctccacaggtacctagggatcaccaggcctctgatgcagcctgaaaggcagaatagaaaatgtatggtctctgttataatcaccctaccccctctttttgGGTGGGCACTGAATGTCAACGATTACAAAGTGTGCTTAATCAGCCAAGACTTTGGATTGATGATATACTCCTACAAAATATACTCTACTGCATTAGCATTCTATATCCCAATGCTAGTCATGTTGTTTATGTATTATCAT---TATAAAGCAGCCAAAAAGACCACAGCCAAGCATGAGTTCTCAGGGTTTCCACATGCACAGCCAGAAAGCATGATCTCCCTGAATGGTCTGGTGAAGCAGCAGAAGGAAGTGGAAGAATGTGCTAACCTTTCAAGACTGCTCAAACATGAAAGAAAGAATACTTCCATATTTAAGAGGCAACAGAAGGCAGCCACTAGCTTGGGAATCATCATTGGGACTTTCACAGTATGCTGGCTACCCTTTTTCTTCCTCTCCACAGCACGGTCCTTGATATGTGGCACCTCC---TACTGTATCCCATTGTGGGTAGAAAGGACATGTCTGTGGCTGGGCTATGCAAACCCCCTCATAAACCCTTTTATACATGCTTTTTTCAACCAGGATTTAAGGACAATCTACAGCAGCCTACTTCAGTGTCAGTATCGGAATATCAACCAGCCACTCTCAGCTGCGAGCATGCATGAAACACTTAAACTTGCCGAGAGGCCTGAGAGAAGTGAATTTGTGCTgtaggttcaatattgctactttccccctattcttttgtgacacttctgag Alignment from Exonerate_coding2genome GTACCTTGGGATCACCAGGCCCCTCACG-----TACCCCGTGAGGCAGAATGGGAAATGTATGGCCAAAATGATTCTGTCGGTCTGGCTTCTCTCTGCCTCCATCACCTTACCTCCTCTCTTCGGATGGGCTCAGAATGTGAACGATGACAAAGTGTGCTTGATCAGCCAGGATTTTGGC---------------TACACGATCTACTCCACCGCAGTGGCGTTTTATATCCCCATGTCGGTCATGCTGTTCATGTACTATCAGATTTACAAGGCCGCCAGGAAGAGCGCAGCCAAACACAAGTTCTCAGGCTTCCCACGCGTGCAGCCGGAGAGCGTCATCTCCCTGAATGGCGTGGTGAAACTCCAGAAGGAGGTGGAAGAGTGTGCGAACCTTTCGAGACTGCTCAAACACGAAAGGAAAAACATTTCCATCTTCAAGAGGGAACAGAAAGCAGCCACTACCTTGGGGATCATCGTGGGAGCCTTCACGGTGTGCTGGCTGCCGTTTTTCCTCTTGTCCACAGCAAGGCCCTTTATCTGTGGCACCTCCTGTAGCTGCATCCCGCTGTGGGTGGAGAGGACATGTCTGTGGCTGGGCTATGCAAACTCTCTCATTAACCCTTTTATATATGCCTTCTTCAACCGGGACCTGAGGACCACCTATCGTAGCCTACTCCAGTGCCAGTACCGGAATATCAACCGGAAGCTCTCTGCTGCAGGCATGCACGAAGCCCTGAAACTTGCTGAGAGGCCTGAGAGAAGCGAGTTTGTGCT taaggagtgtccctccagTAAATTGAAGTCACTGAACCCCACCTCCACAGGTACCTAGGGATCACCAGGCCTCTGATGCAGCCTGAAAGGCAGAATAGAAAATGTATGGTCTCTGTTATAATCACCCTACCCCCTCTTTTTGGGTGGGCACTGAATGTCAACGATTACAAAGTGTGCTTAATCAGCCAAGACTTTGGATTGATGATATACTCCTACAAAATATACTCTACTGCATTAGCATTCTATATCCCAATGCTAGTCATGTTGTTTATGTATTATCAT---TATAAAGCAGCCAAAAAGACCACAGCCAAGCATGAGTTCTCAGGGTTTCCACATGCACAGCCAGAAAGCATGATCTCCCTGAATGGTCTGGTGAAGCAGCAGAAGGAAGTGGAAGAATGTGCTAACCTTTCAAGACTGCTCAAACATGAAAGAAAGAATACTTCCATATTTAAGAGGCAACAGAAGGCAGCCACTAGCTTGGGAATCATCATTGGGACTTTCACAGTATGCTGGCTACCCTTTTTCTTCCTCTCCACAGCACGGTCCTTGATATGTGGCACCTCC---TACTGTATCCCATTGTGGGTAGAAAGGACATGTCTGTGGCTGGGCTATGCAAACCCCCTCATAAACCCTTTTATACATGCTTTTTTCAACCAGGATTTAAGGACAATCTACAGCAGCCTACTTCAGTGTCAGTATCGGAATATCAACCAGCCACTCTCAGCTGCGAGCATGCATGAAACACTTAAACTTGCCGAGAGGCCTGAGAGAAGTGAATTTGTGCTgtaggttcaatattgctactttccccctattcttttgtgacacttctgag Alignment from GeneWise GTACCTTGGGATCACCAGGCCCCTCACGTACCCCGTGAGGCAGAATGGGAAATGTATGGCCAAAATGATTCTGTCGGTCTGGCTTCTCTCTGCCTCCATCACCTTACCTCCTCTCTTCGGATGGGCTCAGAATGTGAACGATGACAAAGTGTGCTTGATCAGCCAGGATTTTGGC---------------TACACGATCTACTCCACCGCAGTGGCGTTTTATATCCCCATGTCGGTCATGCTGTTCATGTACTATCAGATTTACAAGGCCGCCAGGAAGAGCGCAGCCAAACACAAGTTCTCAGGCTTCCCACGCGTGCAGCCGGAGAGCGTCATCTCCCTGAATGGCGTGGTGAAACTCCAGAAGGAGGTGGAAGAGTGTGCGAACCTTTCGAGACTGCTCAAACACGAAAGGAAAAACATTTCCATCTTCAAGAGGGAACAGAAAGCAGCCACTACCTTGGGGATCATCGTGGGAGCCTTCACGGTGTGCTGGCTGCCGTTTTTCCTCTTGTCCACAGCAAGGCCCTTTATCTGTGGCACCTCCTGTAGCTGCATCCCGCTGTGGGTGGAGAGGACATGTCTGTGGCTGGGCTATGCAAACTCTCTCATTAACCCTTTTATATATGCCTTCTTCAACCGGGACCTGAGGACCACCTATCGTAGCCTACTCCAGTGCCAGTACCGGAATATCAACCGGAAGCTCTCTGCTGCAGGCATGCACGAAGCCCTGAAACTTGCTGAGAGGCCTGAGAGAAGCGAGTTTGTGCT taaggagtgtccctccagtaaattgaagtcactgaaccccacctccacagGTACCTAGGGATCACCAGGCCTCTGATGCAGCCTGAAAGGCAGAATAGAAAATGTATGGTCTCTGTTATA---------------------------ATCACCCTACCCCCTCTTTTTGGGTGGGCACTGAATGTCAACGATTACAAAGTGTGCTTAATCAGCCAAGACTTTGGATTGATGATATACTCCTACAAAATATACTCTACTGCATTAGCATTCTATATCCCAATGCTAGTCATGTTGTTTATGTATTATCAT---TATAAAGCAGCCAAAAAGACCACAGCCAAGCATGAGTTCTCAGGGTTTCCACATGCACAGCCAGAAAGCATGATCTCCCTGAATGGTCTGGTGAAGCAGCAGAAGGAAGTGGAAGAATGTGCTAACCTTTCAAGACTGCTCAAACATGAAAGAAAGAATACTTCCATATTTAAGAGGCAACAGAAGGCAGCCACTAGCTTGGGAATCATCATTGGGACTTTCACAGTATGCTGGCTACCCTTTTTCTTCCTCTCCACAGCACGGTCCTTGATATGTGGCACCTCC---TACTGTATCCCATTGTGGGTAGAAAGGACATGTCTGTGGCTGGGCTATGCAAACCCCCTCATAAACCCTTTTATACATGCTTTTTTCAACCAGGATTTAAGGACAATCTACAGCAGCCTACTTCAGTGTCAGTATCGGAATATCAACCAGCCACTCTCAGCTGCGAGCATGCATGAAACACTTAAACTTGCCGAGAGGCCTGAGAGAAGTGAATTTGTGCTgtaggttcaatattgctactttccccctattcttttgtgacacttctgag #### Il33_ID6361_4 --> 2 - 1 Original Alignment gaACTTCACTTTTAACACAGTCTCCTGCCTCCCTGAGTACATACAATGACCAATCTGTTAGTTTTGTTTTGGAGAATGGATGTTATGTGATCAATGTTGACGACTCTGGAAAAGACCAAGAGCAAg taagacacataataggactttgggtatggagtcttctcctcttctcccaggaACCGCACTTTTAACTCAATCACCAGCTTCCCTAAGTACATACAATGACCAGTCTGAGAGTTTTGTGTTAGAAAATGGATGCTATGTACTAAACATTGATGATTCTGGTAAAGACCAGGAACATggtagggcttatccatgccatgggtctatgcttaatgagaaccctgttcat Alignment from CESAR gaACTTCACTTTTAACACAGTCTCCTGCCTCCCTGAGTACATACAATGACCAATCTGTTAGTTTTGTTTTGGAGAATGGATGTTATGTGATCAATGTTGACGACTCTGGAAAAGACCAAGAGCAAg taagacacataataggactttgggtatggagtcttctcctcttctcccaggaACCGCACTTTTAACTCAATCACCAGCTTCCCTAAGTACATACAATGACCAGTCTGAGAGTTTTGTGTTAGAAAATGGATGCTATGTACTAAACATTGATGATTCTGGTAAAGACCAGGAACATggtagggcttatccatgccatgggtctatgcttaatgagaaccctgttcat Alignment from Spaln_aa2Genome GAACTTCACTTTTAACACAGTCTCCTGCCTCCCTGAGTACATACAATGACCAATCTGTTAGTTTTGTTTTGGAGAATGGATGTTATGTGATCAATGTTGACGACTCTGGAAAAGACCAAGAGCAAG taagacacataataggactttgggtatggagtcttctcctcttctcccagGAACCGCACTTTTAACTCAATCACCAGCTTCCCTAAGTACATACAATGACCAGTCTGAGAGTTTTGTGTTAGAAAATGGATGCTATGTACTAAACATTGATGATTCTGGTAAAGACCAGGAACATGgtagggcttatccatgccatgggtctatgcttaatgagaaccctgttcat Alignment from Spaln_nt2Genome GAACTTCACTTTTAACACAGTCTCCTGCCTCCCTGAGTACATACAATGACCAATCTGTTAGTTTTGTTTTGGAGAATGGATGTTATGTGATCAATGTTGACGACTCTGGAAAAGACCAAGAGCAAG taagacacataataggactttgggtatggagtcttctcctcttctcccagGAACCGCACTTTTAACTCAATCACCAGCTTCCCTAAGTACATACAATGACCAGTCTGAGAGTTTTGTGTTAGAAAATGGATGCTATGTACTAAACATTGATGATTCTGGTAAAGACCAGGAACATGgtagggcttatccatgccatgggtctatgcttaatgagaaccctgttcat Alignment from Pairagon GAACTTCACTTTTAACACAGTCTCCTGCCTCCCTGAGTACATACAATGACCAATCTGTTAGTTTTGTTTTGGAGAATGGATGTTATGTGATCAATGTTGACGACTCTGGAAAAGACCAAGAGCAAG taagacacataataggactttgggtatggagtcttctcctcttctcccagGAACCGCACTTTTAACTCAATCACCAGCTTCCCTAAGTACATACAATGACCAGTCTGAGAGTTTTGTGTTAGAAAATGGATGCTATGTACTAAACATTGATGATTCTGGTAAAGACCAGGAACATGgtagggcttatccatgccatgggtctatgcttaatgagaaccctgttcat Alignment from Exonerate_protein2genome GAACTTCACTTTTAACACAGTCTCCTGCCTCCCTGAGTACATACAATGACCAATCTGTTAGTTTTGTTTTGGAGAATGGATGTTATGTGATCAATGTTGACGACTCTGGAAAAGACCAAGAGCAAG taagacacataataggactttgggtatggagtcttctcctcttctcccagGAACCGCACTTTTAACTCAATCACCAGCTTCCCTAAGTACATACAATGACCAGTCTGAGAGTTTTGTGTTAGAAAATGGATGCTATGTACTAAACATTGATGATTCTGGTAAAGACCAGGAACATGgtagggcttatccatgccatgggtctatgcttaatgagaaccctgttcat Alignment from Exonerate_coding2genome GAACTTCACTTTTAACACAGTCTCCTGCCTCCCTGAGTACATACAATGACCAATCTGTTAGTTTTGTTTTGGAGAATGGATGTTATGTGATCAATGTTGACGACTCTGGAAAAGACCAAGAGCAAG taagacacataataggactttgggtatggagtcttctcctcttctcccagGAACCGCACTTTTAACTCAATCACCAGCTTCCCTAAGTACATACAATGACCAGTCTGAGAGTTTTGTGTTAGAAAATGGATGCTATGTACTAAACATTGATGATTCTGGTAAAGACCAGGAACATGgtagggcttatccatgccatgggtctatgcttaatgagaaccctgttcat Alignment from GeneWise GAACTTCACTTTTAACACAGTCTCCTGCCTCCCTGAGTACATACAATGACCAATCTGTTAGTTTTGTTTTGGAGAATGGATGTTATGTGATCAATGTTGACGACTCTGGAAAAGACCAAGAGCAAG taagacacataataggactttgggtatggagtcttctcctcttctcccagGAACCGCACTTTTAACTCAATCACCAGCTTCCCTAAGTACATACAATGACCAGTCTGAGAGTTTTGTGTTAGAAAATGGATGCTATGTACTAAACATTGATGATTCTGGTAAAGACCAGGAACATGgtagggcttatccatgccatgggtctatgcttaatgagaaccctgttcat #### Incenp_ID2607_12 --> 0 - 0 Original Alignment GCTAAGGAGGAGCGTCTGGCAGAGAAGGCAAAGAAGAAGGCAACTGCCAAGAAGATGGAAGAGGTAGAGGCACGAAGGAAGCAGGAGGAGGAGGCACGCAGGCTCAGGTGGCTCCAACAG tatgcccgcacttagacagactgtttcgactcctgtgtgttacttttcagGCTGCAGAGGCGTGTCTGACTGAGAAAGCAAAAGAAAAGGCAACTGCTAAG------GAAGATGTAGAGGCGAAAAGGAAG---GAAAAGGAAGCCCGTCGGCTTAGGTGGGTCCAACAAgtgagtttggccattggttgaatatagtatcagttcacaaagccattagt Alignment from CESAR GCTAAGGAGGAGCGTCTGGCAGAGAAGGCAAAGAAGAAGGCAACTGCCAAGAAGATGGAAGAGGTAGAGGCACGAAGGAAGCAGGAGGAGGAGGCACGCAGGCTCAGGTGGCTCCAACAG tatgcccgcacttagacagactgtttcgactcctgtgtgttacttttcagGCTGCAGAGGCGTGTCTGACTGAGAAAGCAAAAGAAAAGGCAACTGCTAAG------GAAGATGTAGAGGCGAAAAGGAAG---GAAAAGGAAGCCCGTCGGCTTAGGTGGGTCCAACAAgtgagtttggccattggttgaatatagtatcagttcacaaagccattagt Alignment from Spaln_aa2Genome GCTAAGGAGGAGCGTCTGGCAGAGAAGGCAAAGAAGAAGGCAACTGCCAAGAAGATGGAAGAGGTAGAGGCACGAAGGAAGCAGGAGGAGGAGGCACGCAGGCTCAGGTGGCTCCAACAG tatgcccgcacttagacagactgtttcgactcctgtgtgttacttttcagGCTGCAGAGGCGTGTCTGACTGAGAAAGCAAAAGAAAAGGCAACTGCTAAG------GAAGATGTAGAGGCGAAAAGGAAG---GAAAAGGAAGCCCGTCGGCTTAGGTGGGTCCAACAAgtgagtttggccattggttgaatatagtatcagttcacaaagccattagt Alignment from Spaln_nt2Genome GCTAAGGAGGAGCGTCTGGCAGAGAAGGCAAAGAAGAAGGCAACTGCCAAGAAGATGGAAGAGGTAGAGGCACGAAGGAAGCAGGAGGAGGAGGCACGCAGGCTCAGGTGGCTCCAACAG tatgcccgcacttagacagactgtttcgactcctgtgtgttacttttcagGCTGCAGAGGCGTGTCTGACTGAGAAAGCAAAAGAAAAGGCAACTGCTAA------GGAAGATGTAGAGGCGAAAAGGA---AGGAAAAGGAAGCCCGTCGGCTTAGGTGGGTCCAACAAgtgagtttggccattggttgaatatagtatcagttcacaaagccattagt Alignment from Pairagon GCTAAGGAGGAGCGTCTGGCAGAGAAGGCAAAGAAGAAGGCAACTGCCAAGAAGATGGAAGAGGTAGAGGCACGAAGGAAGCAGGAGGAGGAGGCACGCAGGCTCAGGTGGCTCCAACAG tatgcccgcacttagacagactgtttcgactcctgtgtgttacttttcagGCTGCAGAGGCGTGTCTGACTGAGAAAGCAAAAGAAAAGGCAACTGCTAA------GGAAGATGTAGAGGCGAAAAGGA---AGGAAAAGGAAGCCCGTCGGCTTAGGTGGGTCCAACAAgtgagtttggccattggttgaatatagtatcagttcacaaagccattagt Alignment from Exonerate_protein2genome GCTAAGGAGGAGCGTCTGGCAGAGAAGGCAAAGAAGAAGGCAACTGCCAAGAAGATGGAAGAGGTAGAGGCACGAAGGAAGCAGGAGGAGGAGGCACGCAGGCTCAGGTGGCTCCAACAG tatgcccgcacttagacagactgtttcgactcctgtgtgttacttttcagGCTGCAGAGGCGTGTCTGACTGAGAAAGCAAAAGAAAAGGCAACTGCTAAG------GAAGATGTAGAGGCGAAAAGGAAG---GAAAAGGAAGCCCGTCGGCTTAGGTGGGTCCAACAAgtgagtttggccattggttgaatatagtatcagttcacaaagccattagt Alignment from Exonerate_coding2genome tatgcccgcacttagacagactgtttcgactcctgtgtgttacttttcaggctgcagaggcgtgtctgactgagaaagcaaaagaaaaggcaactgctaaggaagatgtagaggcgaaaaggaaggaaaaggaagcccgtcggcttaggtgggtccaacaagtgagtttggccattggttgaatatagtatcagttcacaaagccattagt Alignment from GeneWise GCTAAGGAGGAGCGTCTGGCAGAGAAGGCAAAGAAGAAGGCAACTGCCAAGAAGATGGAAGAGGTAGAGGCACGAAGGAAGCAGGAGGAGGAGGCACGCAGGCTCAGGTGGCTCCAACAG tatgcccgcacttagacagactgtttcgactcctgtgtgttacttttcagGCTGCAGAGGCGTGTCTGACTGAGAAAGCAAAAGAAAAGGCAACTGCTAAG------GAAGATGTAGAGGCGAAAAGGAAG---GAAAAGGAAGCCCGTCGGCTTAGGTGGGTCCAACAAgtgagtttggccattggttgaatatagtatcagttcacaaagccattagt #### Incenp_ID2610_9 --> 0 - 0 Original Alignment GTGGTACGGCCCCTCCGGACTTTCCTGCACACAGTGCAGAAGAACCAGATGCTCATGACCCCCACACTGGCCTCCCGCAGCAGTGTCATGAAGTCCTTTATTAAACGCAACACTCCGCTTCGTGTGGACCCTAAG tttgcattctgtccaaacccctccatcacatgctgcccatctcctcatagGTTGTACACCCCCTGCGGACTTTCTTCCACAAAGTACAAAAGAATCAGATGCTCATGACCCCCACTCTTACCTCCCGGAGCAGTGTTATGAAATCCTTTATTAAACGCAATACTCCTCTTCGTGTGGACCTAAAGgtactgatgtttgtttctaaccccaacttgctcacactaaatctggtgat Alignment from CESAR GTGGTACGGCCCCTCCGGACTTTCCTGCACACAGTGCAGAAGAACCAGATGCTCATGACCCCCACACTGGCCTCCCGCAGCAGTGTCATGAAGTCCTTTATTAAACGCAACACTCCGCTTCGTGTGGACCCTAAG tttgcattctgtccaaacccctccatcacatgctgcccatctcctcatagGTTGTACACCCCCTGCGGACTTTCTTCCACAAAGTACAAAAGAATCAGATGCTCATGACCCCCACTCTTACCTCCCGGAGCAGTGTTATGAAATCCTTTATTAAACGCAATACTCCTCTTCGTGTGGACCTAAAGgtactgatgtttgtttctaaccccaacttgctcacactaaatctggtgat Alignment from Spaln_aa2Genome GTGGTACGGCCCCTCCGGACTTTCCTGCACACAGTGCAGAAGAACCAGATGCTCATGACCCCCACACTGGCCTCCCGCAGCAGTGTCATGAAGTCCTTTATTAAACGCAACACTCCGCTTCGTGTGGACCCTAAG tttgcattctgtccaaacccctccatcacatgctgcccatctcctcatagGTTGTACACCCCCTGCGGACTTTCTTCCACAAAGTACAAAAGAATCAGATGCTCATGACCCCCACTCTTACCTCCCGGAGCAGTGTTATGAAATCCTTTATTAAACGCAATACTCCTCTTCGTGTGGACCTAAAGgtactgatgtttgtttctaaccccaacttgctcacactaaatctggtgat Alignment from Spaln_nt2Genome GTGGTACGGCCCCTCCGGACTTTCCTGCACACAGTGCAGAAGAACCAGATGCTCATGACCCCCACACTGGCCTCCCGCAGCAGTGTCATGAAGTCCTTTATTAAACGCAACACTCCGCTTCGTGTGGACCCTAAG tttgcattctgtccaaacccctccatcacatgctgcccatctcctcatagGTTGTACACCCCCTGCGGACTTTCTTCCACAAAGTACAAAAGAATCAGATGCTCATGACCCCCACTCTTACCTCCCGGAGCAGTGTTATGAAATCCTTTATTAAACGCAATACTCCTCTTCGTGTGGACCTAAAGgtactgatgtttgtttctaaccccaacttgctcacactaaatctggtgat Alignment from Pairagon GTGGTACGGCCCCTCCGGACTTTCCTGCACACAGTGCAGAAGAACCAGATGCTCATGACCCCCACACTGGCCTCCCGCAGCAGTGTCATGAAGTCCTTTATTAAACGCAACACTCCGCTTCGTGTGGACCCTAAG tttgcattctgtccaaacccctccatcacatgctgcccatctcctcatagGTTGTACACCCCCTGCGGACTTTCTTCCACAAAGTACAAAAGAATCAGATGCTCATGACCCCCACTCTTACCTCCCGGAGCAGTGTTATGAAATCCTTTATTAAACGCAATACTCCTCTTCGTGTGGACCTAAAGgtactgatgtttgtttctaaccccaacttgctcacactaaatctggtgat Alignment from Exonerate_protein2genome GTGGTACGGCCCCTCCGGACTTTCCTGCACACAGTGCAGAAGAACCAGATGCTCATGACCCCCACACTGGCCTCCCGCAGCAGTGTCATGAAGTCCTTTATTAAACGCAACACTCCGCTTCGTGTGGACCCTAAG tttgcattctgtccaaacccctccatcacatgctgcccatctcctcatagGTTGTACACCCCCTGCGGACTTTCTTCCACAAAGTACAAAAGAATCAGATGCTCATGACCCCCACTCTTACCTCCCGGAGCAGTGTTATGAAATCCTTTATTAAACGCAATACTCCTCTTCGTGTGGACCTAAAGgtactgatgtttgtttctaaccccaacttgctcacactaaatctggtgat Alignment from Exonerate_coding2genome GTGGTACGGCCCCTCCGGACTTTCCTGCACACAGTGCAGAAGAACCAGATGCTCATGACCCCCACACTGGCCTCCCGCAGCAGTGTCATGAAGTCCTTTATTAAACGCAACACTCCGCTTCGTGTGGACCCTAAG tttgcattctgtccaaacccctccatcacatgctgcccatctcctcatagGTTGTACACCCCCTGCGGACTTTCTTCCACAAAGTACAAAAGAATCAGATGCTCATGACCCCCACTCTTACCTCCCGGAGCAGTGTTATGAAATCCTTTATTAAACGCAATACTCCTCTTCGTGTGGACCTAAAGgtactgatgtttgtttctaaccccaacttgctcacactaaatctggtgat Alignment from GeneWise GTGGTACGGCCCCTCCGGACTTTCCTGCACACAGTGCAGAAGAACCAGATGCTCATGACCCCCACACTGGCCTCCCGCAGCAGTGTCATGAAGTCCTTTATTAAACGCAACACTCCGCTTCGTGTGGACCCTAAG tttgcattctgtccaaacccctccatcacatgctgcccatctcctcatagGTTGTACACCCCCTGCGGACTTTCTTCCACAAAGTACAAAAGAATCAGATGCTCATGACCCCCACTCTTACCTCCCGGAGCAGTGTTATGAAATCCTTTATTAAACGCAATACTCCTCTTCGTGTGGACCTAAAGgtactgatgtttgtttctaaccccaacttgctcacactaaatctggtgat #### Incenp_ID2611_8 --> 1 - 0 Original Alignment gAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG gtgtcaaactgacatgaagacccatattttcccctctccaacctcttcaggAGGAAACGTAGTTACAAAAAGGCTATAAGTAAGCCAGATGAGGATCAGCTGGAAGATGAAGACCGTAAGCCATGTCAGAATAAAACACTTTCAGCACCCTGCCCACCCAACAAGgtaagtgtctgctcatgttttatgcccttattttgcattctgtccaaacc Alignment from CESAR gAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG gtgtcaaactgacatgaagacccatattttcccctctccaacctcttcaggAGGAAACGTAGTTACAAAAAGGCTATAAGTAAGCCAGATGAGGATCAGCTGGAAGATGAAGACCGTAAGCCATGTCAGAATAAAACACTTTCAGCACCCTGCCCACCCAACAAGgtaagtgtctgctcatgttttatgcccttattttgcattctgtccaaacc Alignment from Spaln_aa2Genome GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG gtgtcaaactgacatgaagacccatattttcccctctccaacctcttcagGAGGAAACGTAGTTACAAAAAGGCTATAAGTAAGCCAGATGAGGATCAGCTGGAAGATGAAGACCGTAAGCCATGTCAGAATAAAACACTTTCAGCACCCTGCCCACCCAACAAGgtaagtgtctgctcatgttttatgcccttattttgcattctgtccaaacc Alignment from Spaln_nt2Genome GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG gtgtcaaactgacatgaagacccatattttcccctctccaacctcttcagGAGGAAACGTAGTTACAAAAAGGCTATAAGTAAGCCAGATGAGGATCAGCTGGAAGATGAAGACCGTAAGCCATGTCAGAATAAAACACTTTCAGCACCCTGCCCACCCAACAAGgtaagtgtctgctcatgttttatgcccttattttgcattctgtccaaacc Alignment from Pairagon GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG gtgtcaaactgacatgaagacccatattttcccctctccaacctcttcagGAGGAAACGTAGTTACAAAAAGGCTATAAGTAAGCCAGATGAGGATCAGCTGGAAGATGAAGACCGTAAGCCATGTCAGAATAAAACACTTTCAGCACCCTGCCCACCCAACAAGgtaagtgtctgctcatgttttatgcccttattttgcattctgtccaaacc Alignment from Exonerate_protein2genome GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG gtgtcaaactgacatgaagacccatattttcccctctccaacctcttcagGAGGAAACGTAGTTACAAAAAGGCTATAAGTAAGCCAGATGAGGATCAGCTGGAAGATGAAGACCGTAAGCCATGTCAGAATAAAACACTTTCAGCACCCTGCCCACCCAACAAGgtaagtgtctgctcatgttttatgcccttattttgcattctgtccaaacc Alignment from Exonerate_coding2genome GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG gtgtcaaactgacatgaagacccatattttcccctctccaacctcttcagGAGGAAACGTAGTTACAAAAAGGCTATAAGTAAGCCAGATGAGGATCAGCTGGAAGATGAAGACCGTAAGCCATGTCAGAATAAAACACTTTCAGCACCCTGCCCACCCAACAAGgtaagtgtctgctcatgttttatgcccttattttgcattctgtccaaacc Alignment from GeneWise GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG gtgtcaaactgacatgaagacccatattttcccctctccaacctcttcagGAGGAAACGTAGTTACAAAAAGGCTATAAGTAAGCCAGATGAGGATCAGCTGGAAGATGAAGACCGTAAGCCATGTCAGAATAAAACACTTTCAGCACCCTGCCCACCCAACAAGgtaagtgtctgctcatgttttatgcccttattttgcattctgtccaaacc #### Incenp_ID2614_5 --> 1 - 0 Original Alignment cCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG cagagctgctctctaccatgaagatatgctctcctatgctttctttctagcCTGGAGCAGGAGCCCGTTGAGGTTACTGAGCCTGAAGATACAGAAGAGGAGCAAGAGgtaagtgcgctcctgggccaactcttactcccctcagcttatgggtcagt Alignment from CESAR cCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG cagagctgctctctaccatgaagatatgctctcctatgctttctttctagcCTGGAGCAGGAGCCCGTTGAGGTTACTGAGCCTGAAGATACAGAAGAGGAGCAAGAGgtaagtgcgctcctgggccaactcttactcccctcagcttatgggtcagt Alignment from Spaln_aa2Genome CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG cagagctgctctctaccatgaagatatgctctcctatgctttctttctagCCTGGAGCAGGAGCCCGTTGAGGTTACTGAGCCTGAAGATACAGAAGAGGAGCAAGAGgtaagtgcgctcctgggccaactcttactcccctcagcttatgggtcagt Alignment from Spaln_nt2Genome CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG cagagctgctctctaccatgaagatatgctctcctatgctttctttctagCCTGGAGCAGGAGCCCGTTGAGGTTACTGAGCCTGAAGATACAGAAGAGGAGCAAGAGgtaagtgcgctcctgggccaactcttactcccctcagcttatgggtcagt Alignment from Pairagon CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG cagagctgctctctaccatgaagatatgctctcctatgctttctttctagCCTGGAGCAGGAGCCCGTTGAGGTTACTGAGCCTGAAGATACAGAAGAGGAGCAAGAGgtaagtgcgctcctgggccaactcttactcccctcagcttatgggtcagt Alignment from Exonerate_protein2genome CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG cagagctgctctctaccatgaagatatgctctcctatgctttctttctagCCTGGAGCAGGAGCCCGTTGAGGTTACTGAGCCTGAAGATACAGAAGAGGAGCAAGAGgtaagtgcgctcctgggccaactcttactcccctcagcttatgggtcagt Alignment from Exonerate_coding2genome CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG cagagctgctctctaccatgaagatatgctctcctatgctttctttctagCCTGGAGCAGGAGCCCGTTGAGGTTACTGAGCCTGAAGATACAGAAGAGGAGCAAGAGgtaagtgcgctcctgggccaactcttactcccctcagcttatgggtcagt Alignment from GeneWise CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG cagagctgctctctaccatgaagatatgctctcctatgctttctttctagCCTGGAGCAGGAGCCCGTTGAGGTTACTGAGCCTGAAGATACAGAAGAGGAGCAAGAGgtaagtgcgctcctgggccaactcttactcccctcagcttatgggtcagt #### Incenp_ID2616_3 --> 1 - 1 Original Alignment gTTATCCCGCAGAAAGTCTCGGAGCAGTCAGGTGGGTACCCGGCACCTCCGCAGCAAGCCCGTTACTATTGTTGAG------GAGAATGGCTTCCCTGTGTTGCAGCGGATAACCCGGGCCACAGCTGCAGCAGCGGCAGCAGCA------GCGGCAGCGTCTGTGGCATCAGCTTCTTCCTCTTCCACTGCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTGGAGATAAGCACTAGTGAACGACTGAGTGCAGAACTACAACTCACTAAGCTCAAAGGTAGCCTTCCTCCATCTCCAGTTTCCCAAGGCACCCTGACATCAGAGGAGGAACTAACACCCAAGAAATCAGAGGCTGGAAAGCTGGACTCTGTCACAGTGAACTCCCTCAAGGCTACCCCTCAGAGCCCCAAGAACCGAGGGGTTGGGGAAGGACGTTCTGTTTCCAAGCTCAAGATTGCTCGGGCCTCCTGGGGGCTGCAGGACTCTCCTGGCTCTACAGACTCACCATGGCAAGAGCGGGTGCTTTCTCCTATCCTGCTGAATAACATCTTGCCCACAACAGCCAAGAGCCCTCTTGGGAATATTCGGTCAGTGCGGCGAAGCCTGATTTCCCAGGATTCCCAAGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAAGAAAATGGCAGTCGCAGATCAAGCAGAAGGATTGCCAAGAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTt tgttgggtcatcctgtggaacccttatgtgtttttccctcttgggggcagaTTGTCACACAGAAAGTCACGGAGTAGCCTGGTGGGTAGTCGATATCTCAGGAGTAAGCCTGTCATAATTGCTGAAGTAGATGAGAATGGATTTCCTGTTTTGCAGTGGATAACTCATGCTACAGCAGCAGCAGCAGCAGCTGCAGCAGCAACAGCAACATCTGTGGCATCAGCCTCTTTTCCCTCCACCTCAGGGTCCCCTACAGTACTGACTAAGAAGGCGGTGGTAGAGATAAGTACAGGTGAACGACTTAGTGCA---TTACAACTCACTAAGCTAAAAGACAGCCTGCCACCATCTCCCGTTTCCCACGGCACGCTGACCTCAGATAAAGAATTGACACCCAAAAAGTCAGAGTCAGGAAAACTTGATTCTGTCACAGTAAACTCTCTCATGGCTACACCTCAGAGCCCCAGGAACCGAGGGGTAGGGGAAGGACGATCTGTCTCCAAACTCAAGATTGCACAGGCATCCTGGGGG------GACTCCCCTGGATCA---GAGTTG------GAAGAGCAGGTACTTTCCCCGATTTTGCTGAACAATATCCTGCCCACAACCACACAAAGCCACCTTGGGAATATCCACTCACTACAACGGAGCCTGATTTCTCAGGATTCCCATGTGCCACTAGCCTCAAAGTATAACTTGGTGGCTAAACAAAAGAATGGGACTCGCAGGTCCAGCAGAAGAGTTGCAAAACAGGCATCCAAGGAGCCTGAGGCTTCTGCTCAAATCATTtgtaagagagacactgatgctgatgtgggtcaaggccattataagtggtcc Alignment from CESAR gTTATCCCGCAGAAAGTCTCGGAGCAGTCAGGTGGGTACCCGGCACCTCCGCAGCAAGCCCGTTACTATT------GTTGAGGAGAATGGCTTCCCTGTGTTGCAGCGGATAACCCGGGCCACAGCTGCAGCAGCGGCAGCAGCAGCGGCAGCG------TCTGTGGCATCAGCTTCTTCCTCTTCCACTGCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTGGAGATAAGCACTAGTGAACGACTGAGTGCAGAACTACAACTCACTAAGCTCAAAGGTAGCCTTCCTCCATCTCCAGTTTCCCAAGGCACCCTGACATCAGAGGAGGAACTAACACCCAAGAAATCAGAGGCTGGAAAGCTGGACTCTGTCACAGTGAACTCCCTCAAGGCTACCCCTCAGAGCCCCAAGAACCGAGGGGTTGGGGAAGGACGTTCTGTTTCCAAGCTCAAGATTGCTCGGGCCTCCTGGGGGCTGCAGGACTCTCCTGGCTCTACAGACTCACCATGGCAAGAGCGGGTGCTTTCTCCTATCCTGCTGAATAACATCTTGCCCACAACAGCCAAGAGCCCTCTTGGGAATATTCGGTCAGTGCGGCGAAGCCTGATTTCCCAGGATTCCCAAGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAAGAAAATGGCAGTCGCAGATCAAGCAGAAGGATTGCCAAGAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTt tgttgggtcatcctgtggaacccttatgtgtttttccctcttgggggcagaTTGTCACACAGAAAGTCACGGAGTAGCCTGGTGGGTAGTCGATATCTCAGGAGTAAGCCTGTCATAATTGCTGAAGTAGATGAGAATGGATTTCCTGTTTTGCAGTGGATAACTCATGCTACAGCAGCAGCAGCAGCAGCTGCAGCAGCAACAGCAACATCTGTGGCATCAGCCTCTTTTCCCTCCACCTCAGGGTCCCCTACAGTACTGACTAAGAAGGCGGTGGTAGAGATAAGTACAGGTGAACGACTTAGTGCA---TTACAACTCACTAAGCTAAAAGACAGCCTGCCACCATCTCCCGTTTCCCACGGCACGCTGACCTCAGATAAAGAATTGACACCCAAAAAGTCAGAGTCAGGAAAACTTGATTCTGTCACAGTAAACTCTCTCATGGCTACACCTCAGAGCCCCAGGAACCGAGGGGTAGGGGAAGGACGATCTGTCTCCAAACTCAAGATTGCACAGGCATCCTGGGGG------GACTCCCCTGGA---------TCAGAGTTGGAAGAGCAGGTACTTTCCCCGATTTTGCTGAACAATATCCTGCCCACAACCACACAAAGCCACCTTGGGAATATCCACTCACTACAACGGAGCCTGATTTCTCAGGATTCCCATGTGCCACTAGCCTCAAAGTATAACTTGGTGGCTAAACAAAAGAATGGGACTCGCAGGTCCAGCAGAAGAGTTGCAAAACAGGCATCCAAGGAGCCTGAGGCTTCTGCTCAAATCATTtgtaagagagacactgatgctgatgtgggtcaaggccattataagtggtcc Alignment from Spaln_aa2Genome GTTATCCCGCAGAAAGTCTCGGAGCAGTCAGGTGGGTACCCGGCACCTCCGCAGCAAGCCCGTTACTATT------GTTGAGGAGAATGGCTTCCCTGTGTTGCAGCGGATAACCCGGGCCACAGCT---GCAGCAGCGGCAGCAGCAGCGGCAGCGTCTGTGGCATCAGCTTCTTCCTCTTCCACTGCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTGGAGATAAGCACTAGTGAACGACTGAGTGCAGAACTACAACTCACTAAGCTCAAAGGTAGCCTTCCTCCATCTCCAGTTTCCCAAGGCACCCTGACATCAGAGGAGGAACTAACACCCAAGAAATCAGAGGCTGGAAAGCTGGACTCTGTCACAGTGAACTCCCTCAAGGCTACCCCTCAGAGCCCCAAGAACCGAGGGGTTGGGGAAGGACGTTCTGTTTCCAAGCTCAAGATTGCTCGGGCCTCCTGGGGGCTGCAGGACTCTCCTGGCTCTACAGACTCACCATGGCAAGAGCGGGTGCTTTCTCCTATCCTGCTGAATAACATCTTGCCCACAACAGCCAAGAGCCCTCTTGGGAATATTCGGTCAGTGCGGCGAAGCCTGATTTCCCAGGATTCCCAAGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAAGAAAATGGCAGTCGCAGATCAAGCAGAAGGATTGCCAAGAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTT tgttgggtcatcctgtggaacccttatgtgtttttccctcttgggggcagATTGTCACACAGAAAGTCACGGAGTAGCCTGGTGGGTAGTCGATATCTCAGGAGTAAGCCTGTCATAATTGCTGAAGTAGATGAGAATGGATTTCCTGTTTTGCAGTGGATAACTCATGCTACAGCAGCAGCAGCAGCAGCTGCAGCAGCAACAGCAACATCTGTGGCATCAGCCTCTTTTCCCTCCACCTCAGGGTCCCCTACAGTACTGACTAAGAAGGCGGTGGTAGAGATAAGTACAGGTGAACGACTTAGTGCATTACAACTCACTAAGCTAAAAGACAGCCTGCCACCATCTCCCGTTTCCCACGGCACGCTGACCTCAGATAAAGAATTGACACCCAAAAAGTCAGAGTCAGGAAAACTTGATTCTGTCACAGTAAACTCTCTCATGGCTACACCTCAGAGCCCCAGGAACCGAGGGGTAGGGGAAGGACGATCTGTCTCCAAACTCAAGATTGCACAGGCATCCTGGGGG------GACTCCCCTGGATCAGAG---------TTGGAAGAGCAGGTACTTTCCCCGATTTTGCTGAACAATATCCTGCCCACAACCACACAAAGCCACCTTGGGAATATCCACTCACTACAACGGAGCCTGATTTCTCAGGATTCCCATGTGCCACTAGCCTCAAAGTATAACTTGGTGGCTAAACAAAAGAATGGGACTCGCAGGTCCAGCAGAAGAGTTGCAAAACAGGCATCCAAGGAGCCTGAGGCTTCTGCTCAAATCATTTgtaagagagacactgatgctgatgtgggtcaaggccattataagtggtcc Alignment from Spaln_nt2Genome GTTATCCCGCAGAAAGTCTCGGAGCAGTCAGGTGGGTACCCGGCACCTCCGCAGCAAGCCCGTTACTATTGTTGAGG------AGAATGGCTTCCCTGTGTTGCAGCGGATAACCCGGGCCACAGCTGCAGCA------GCGGCAGCAGCAGCGGCAGCGTCTGTGGCATCAGCTTCTTCCTCTTCCACTGCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTGGAGATAAGCACTAGTGAACGACTGAGTGCAGAACTACAACTCACTAAGCTCAAAGGTAGCCTTCCTCCATCTCCAGTTTCCCAAGGCACCCTGACATCAGAGGAGGAACTAACACCCAAGAAATCAGAGGCTGGAAAGCTGGACTCTGTCACAGTGAACTCCCTCAAGGCTACCCCTCAGAGCCCCAAGAACCGAGGGGTTGGGGAAGGACGTTCTGTTTCCAAGCTCAAGATTGCTCGGGCCTCCTGGGGGCTGCAGGACTCTCCTGGCTCTACAGACTCACCATGGCAAGAGCGGGTGCTTTCTCCTATCCTGCTGAATAACATCTTGCCCACAACAGCCAAGAGCCCTCTTGGGAATATTCGGTCAGTGCGGCGAAGCCTGATTTCCCAGGATTCCCAAGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAAGAAAATGGCAGTCGCAGATCAAGCAGAAGGATTGCCAAGAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTT tgttgggtcatcctgtggaacccttatgtgtttttccctcttgggggcagATTGTCACACAGAAAGTCACGGAGTAGCCTGGTGGGTAGTCGATATCTCAGGAGTAAGCCTGTCATAATTGCTGAAGTAGATGAGAATGGATTTCCTGTTTTGCAGTGGATAACTCATGCTACAGCAGCAGCAGCAGCAGCTGCAGCAGCAACAGCAACATCTGTGGCATCAGCCTCTTTTCCCTCCACCTCAGGGTCCCCTACAGTACTGACTAAGAAGGCGGTGGTAGAGATAAGTACAGGTGAACGACTTAGTGC---ATTACAACTCACTAAGCTAAAAGACAGCCTGCCACCATCTCCCGTTTCCCACGGCACGCTGACCTCAGATAAAGAATTGACACCCAAAAAGTCAGAGTCAGGAAAACTTGATTCTGTCACAGTAAACTCTCTCATGGCTACACCTCAGAGCCCCAGGAACCGAGGGGTAGGGGAAGGACGATCTGTCTCCAAACTCAAGATTGCACAGGCATCCTGGGG------GGACTCCCCTGGAT---CAGAGT-----TGG-AAGAGCAGGTACTTTCCCCGATTTTGCTGAACAATATCCTGCCCACAACCACACAAAGCCACCTTGGGAATATCCACTCACTACAACGGAGCCTGATTTCTCAGGATTCCCATGTGCCACTAGCCTCAAAGTATAACTTGGTGGCTAAACAAAAGAATGGGACTCGCAGGTCCAGCAGAAGAGTTGCAAAACAGGCATCCAAGGAGCCTGAGGCTTCTGCTCAAATCATTTgtaagagagacactgatgctgatgtgggtcaaggccattataagtggtcc Alignment from Pairagon GTTATCCCGCAGAAAGTCTCGGAGCAGTCAGGTGGGTACCCGGCACCTCCGCAGCAAGCCCGTTACTATTGTTGAG------GAGAATGGCTTCCCTGTGTTGCAGCGGATAACCCGGGCCACAGCTGCAGCAGCG------GCAGCAGCAGCGGCAGCGTCTGTGGCATCAGCTTCTTCCTCTTCCACTGCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTGGAGATAAGCACTAGTGAACGACTGAGTGCAGAACTACAACTCACTAAGCTCAAAGGTAGCCTTCCTCCATCTCCAGTTTCCCAAGGCACCCTGACATCAGAGGAGGAACTAACACCCAAGAAATCAGAGGCTGGAAAGCTGGACTCTGTCACAGTGAACTCCCTCAAGGCTACCCCTCAGAGCCCCAAGAACCGAGGGGTTGGGGAAGGACGTTCTGTTTCCAAGCTCAAGATTGCTCGGGCCTCCTGGGGGCTGCAGGACTCTCCTGGCTCTACAGACTCACCATGGCAAGAGCGGGTGCTTTCTCCTATCCTGCTGAATAACATCTTGCCCACAACAGCCAAGAGCCCTCTTGGGAATATTCGGTCAGTGCGGCGAAGCCTGATTTCCCAGGATTCCCAAGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAAGAAAATGGCAGTCGCAGATCAAGCAGAAGGATTGCCAAGAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTT tgttgggtcatcctgtggaacccttatgtgtttttccctcttgggggcagATTGTCACACAGAAAGTCACGGAGTAGCCTGGTGGGTAGTCGATATCTCAGGAGTAAGCCTGTCATAATTGCTGAAGTAGATGAGAATGGATTTCCTGTTTTGCAGTGGATAACTCATGCTACAGCAGCAGCAGCAGCAGCTGCAGCAGCAACAGCAACATCTGTGGCATCAGCCTCTTTTCCCTCCACCTCAGGGTCCCCTACAGTACTGACTAAGAAGGCGGTGGTAGAGATAAGTACAGGTGAACGACTTAGTGC---ATTACAACTCACTAAGCTAAAAGACAGCCTGCCACCATCTCCCGTTTCCCACGGCACGCTGACCTCAGATAAAGAATTGACACCCAAAAAGTCAGAGTCAGGAAAACTTGATTCTGTCACAGTAAACTCTCTCATGGCTACACCTCAGAGCCCCAGGAACCGAGGGGTAGGGGAAGGACGATCTGTCTCCAAACTCAAGATTGCACAGGCATCCTGGGG------GGACTCCCCTGG---------ATCAGAGTTGGAAGAGCAGGTACTTTCCCCGATTTTGCTGAACAATATCCTGCCCACAACCACACAAAGCCACCTTGGGAATATCCACTCACTACAACGGAGCCTGATTTCTCAGGATTCCCATGTGCCACTAGCCTCAAAGTATAACTTGGTGGCTAAACAAAAGAATGGGACTCGCAGGTCCAGCAGAAGAGTTGCAAAACAGGCATCCAAGGAGCCTGAGGCTTCTGCTCAAATCATTTgtaagagagacactgatgctgatgtgggtcaaggccattataagtggtcc Alignment from Exonerate_protein2genome GAAAAGGTTATCCCGCAGAAAGTCTCGGAGCAGTCAGGTGGGTACCCGGCACCTCCGCAGCAAGCCCGTTACTATT------GTTGAGGAGAATGGCTTCCCTGTGTTGCAGCGGATAACCCGGGCCACAGCTGCAGCAGCGGCAGCAGCAGCG------GCAGCGTCTGTGGCATCAGCTTCTTCCTCTTCCACTGCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTGGAGATAAGCACTAGTGAACGACTGAGTGCAGAACTACAACTCACTAAGCTCAAAGGTAGCCTTCCTCCATCTCCAGTTTCCCAAGGCACCCTGACATCAGAGGAGGAACTAACACCCAAGAAATCAGAGGCTGGAAAGCTGGACTCTGTCACAGTGAACTCCCTCAAGGCTACCCCTCAGAGCCCCAAGAACCGAGGGGTTGGGGAAGGACGTTCTGTTTCCAAGCTCAAGATTGCTCGGGCCTCCTGGGGGCTGCAGGACTCTCCTGGCTCTACAGACTCACCATGGCAAGAGCGGGTGCTTTCTCCTATCCTGCTGAATAACATCTTGCCCACAACAGCCAAGAGCCCTCTTGGGAATATTCGGTCAGTGCGGCGAAGCCTGATTTCCCAGGATTCCCAAGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAAGAAAATGGCAGTCGCAGATCAAGCAGAAGGATTGCCAAGAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTT tgttgggtcatcctgtggaacccttatgtgtttttccctcttggGGGCAGATTGTCACACAGAAAGTCACGGAGTAGCCTGGTGGGTAGTCGATATCTCAGGAGTAAGCCTGTCATAATTGCTGAAGTAGATGAGAATGGATTTCCTGTTTTGCAGTGGATAACTCATGCTACAGCAGCAGCAGCAGCAGCTGCAGCAGCAACAGCAACATCTGTGGCATCAGCCTCTTTTCCCTCCACCTCAGGGTCCCCTACAGTACTGACTAAGAAGGCGGTGGTAGAGATAAGTACAGGTGAACGACTTAGTGCA---TTACAACTCACTAAGCTAAAAGACAGCCTGCCACCATCTCCCGTTTCCCACGGCACGCTGACCTCAGATAAAGAATTGACACCCAAAAAGTCAGAGTCAGGAAAACTTGATTCTGTCACAGTAAACTCTCTCATGGCTACACCTCAGAGCCCCAGGAACCGAGGGGTAGGGGAAGGACGATCTGTCTCCAAACTCAAGATTGCACAGGCATCCTGGGGG------GACTCCCCTGGA---------TCAGAGTTGGAAGAGCAGGTACTTTCCCCGATTTTGCTGAACAATATCCTGCCCACAACCACACAAAGCCACCTTGGGAATATCCACTCACTACAACGGAGCCTGATTTCTCAGGATTCCCATGTGCCACTAGCCTCAAAGTATAACTTGGTGGCTAAACAAAAGAATGGGACTCGCAGGTCCAGCAGAAGAGTTGCAAAACAGGCATCCAAGGAGCCTGAGGCTTCTGCTCAAATCATTTgtaagagagacactgatgctgatgtgggtcaaggccattataagtggtcc Alignment from Exonerate_coding2genome GAAAAGGTTATCCCGCAGAAAGTCTCGGAGCAGTCAGGTGGGTACCCGGCACCTCCGCAGCAAGCCCGTTACTATT------GTTGAGGAGAATGGCTTCCCTGTGTTGCAGCGGATAACCCGGGCCACAGCTGCAGCAGCGGCAGCAGCAGCG------GCAGCGTCTGTGGCATCAGCTTCTTCCTCTTCCACTGCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTGGAGATAAGCACTAGTGAACGACTGAGTGCAGAACTACAACTCACTAAGCTCAAAGGTAGCCTTCCTCCATCTCCAGTTTCCCAAGGCACCCTGACATCAGAGGAGGAACTAACACCCAAGAAATCAGAGGCTGGAAAGCTGGACTCTGTCACAGTGAACTCCCTCAAGGCTACCCCTCAGAGCCCCAAGAACCGAGGGGTTGGGGAAGGACGTTCTGTTTCCAAGCTCAAGATTGCTCGGGCCTCCTGGGGGCTGCAGGACTCTCCTGGCTCTACAGACTCACCATGGCAAGAGCGGGTGCTTTCTCCTATCCTGCTGAATAACATCTTGCCCACAACAGCCAAGAGCCCTCTTGGGAATATTCGGTCAGTGCGGCGAAGCCTGATTTCCCAGGATTCCCAAGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAAGAAAATGGCAGTCGCAGATCAAGCAGAAGGATTGCCAAGAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTT tgttgggtcatcctgtggaacccttatgtgtttttccctcttggGGGCAGATTGTCACACAGAAAGTCACGGAGTAGCCTGGTGGGTAGTCGATATCTCAGGAGTAAGCCTGTCATAATTGCTGAAGTAGATGAGAATGGATTTCCTGTTTTGCAGTGGATAACTCATGCTACAGCAGCAGCAGCAGCAGCTGCAGCAGCAACAGCAACATCTGTGGCATCAGCCTCTTTTCCCTCCACCTCAGGGTCCCCTACAGTACTGACTAAGAAGGCGGTGGTAGAGATAAGTACAGGTGAACGACTTAGTGCA---TTACAACTCACTAAGCTAAAAGACAGCCTGCCACCATCTCCCGTTTCCCACGGCACGCTGACCTCAGATAAAGAATTGACACCCAAAAAGTCAGAGTCAGGAAAACTTGATTCTGTCACAGTAAACTCTCTCATGGCTACACCTCAGAGCCCCAGGAACCGAGGGGTAGGGGAAGGACGATCTGTCTCCAAACTCAAGATTGCACAGGCATCCTGGGGG------GACTCCCCTGGA---------TCAGAGTTGGAAGAGCAGGTACTTTCCCCGATTTTGCTGAACAATATCCTGCCCACAACCACACAAAGCCACCTTGGGAATATCCACTCACTACAACGGAGCCTGATTTCTCAGGATTCCCATGTGCCACTAGCCTCAAAGTATAACTTGGTGGCTAAACAAAAGAATGGGACTCGCAGGTCCAGCAGAAGAGTTGCAAAACAGGCATCCAAGGAGCCTGAGGCTTCTGCTCAAATCATTTgtaagagagacactgatgctgatgtgggtcaaggccattataagtggtcc Alignment from GeneWise GTTATCCCGCAGAAAGTCTCGGAGCAGTCAGGTGGGTACCCGGCACCTCCGCAGCAAGCCCGTTACTATT------GTTGAGGAGAATGGCTTCCCTGTGTTGCAGCGGATAACCCGGGCCACAGCTGCAGCAGCGGCAGCAGCAGCGGCAGCG------TCTGTGGCATCAGCTTCTTCCTCTTCCACTGCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTGGAGATAAGCACTAGTGAACGACTGAGTGCAGAACTACAACTCACTAAGCTCAAAGGTAGCCTTCCTCCATCTCCAGTTTCCCAAGGCACCCTGACATCAGAGGAGGAACTAACACCCAAGAAATCAGAGGCTGGAAAGCTGGACTCTGTCACAGTGAACTCCCTCAAGGCTACCCCTCAGAGCCCCAAGAACCGAGGGGTTGGGGAAGGACGTTCTGTTTCCAAGCTCAAGATTGCTCGGGCCTCCTGGGGGCTGCAGGACTCTCCTGGCTCTACAGACTCACCATGGCAAGAGCGGGTGCTTTCTCCTATCCTGCTGAATAACATCTTGCCCACAACAGCCAAGAGCCCTCTTGGGAATATTCGGTCAGTGCGGCGAAGCCTGATTTCCCAGGATTCCCAAGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAAGAAAATGGCAGTCGCAGATCAAGCAGAAGGATTGCCAAGAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTT tgttgggtcatcctgtggaacccttatgtgtttttccctcttgggggcagATTGTCACACAGAAAGTCACGGAGTAGCCTGGTGGGTAGTCGATATCTCAGGAGTAAGCCTGTCATAATTGCTGAAGTAGATGAGAATGGATTTCCTGTTTTGCAGTGGATAACTCATGCTACAGCAGCAGCAGCAGCAGCTGCAGCAGCAACAGCAACATCTGTGGCATCAGCCTCTTTTCCCTCCACCTCAGGGTCCCCTACAGTACTGACTAAGAAGGCGGTGGTAGAGATAAGTACAGGTGAACGACTTAGTGCA---TTACAACTCACTAAGCTAAAAGACAGCCTGCCACCATCTCCCGTTTCCCACGGCACGCTGACCTCAGATAAAGAATTGACACCCAAAAAGTCAGAGTCAGGAAAACTTGATTCTGTCACAGTAAACTCTCTCATGGCTACACCTCAGAGCCCCAGGAACCGAGGGGTAGGGGAAGGACGATCTGTCTCCAAACTCAAGATTGCACAGGCATCCTGGGGG------GACTCCCCTGGATCAGAG---------TTGGAAGAGCAGGTACTTTCCCCGATTTTGCTGAACAATATCCTGCCCACAACCACACAAAGCCACCTTGGGAATATCCACTCACTACAACGGAGCCTGATTTCTCAGGATTCCCATGTGCCACTAGCCTCAAAGTATAACTTGGTGGCTAAACAAAAGAATGGGACTCGCAGGTCCAGCAGAAGAGTTGCAAAACAGGCATCCAAGGAGCCTGAGGCTTCTGCTCAAATCATTTgtaagagagacactgatgctgatgtgggtcaaggccattataagtggtcc #### Jak2_ID6230_6 --> 0 - 0 Original Alignment GACGTACAGTTATATTGTGATTTCCCTGATATTATTGATGTCAGTATTAAGCAAGCAAACCAGGAATGCTCAAATGAAAGTAGAATTGTAACTGTCCATAAACAAGATGGTAAAGTTTTG ttcatgtaagtataattattatgtcacacagaactgtcctttcccactagGATGTACAGTTATATTGTGGTTTCCCTGATATTATTGATGTTAGTATTAAGCAAGCCAATCAAGAATGCTCAAATGAAAGTCGAATTGTTACAGTCCATGAGCAAGATGGTAAGGTCTTGgtaggcccaaatatacttgctggtcaatatacacgtgctgtgtctccccc Alignment from CESAR GACGTACAGTTATATTGTGATTTCCCTGATATTATTGATGTCAGTATTAAGCAAGCAAACCAGGAATGCTCAAATGAAAGTAGAATTGTAACTGTCCATAAACAAGATGGTAAAGTTTTG ttcatgtaagtataattattatgtcacacagaactgtcctttcccactagGATGTACAGTTATATTGTGGTTTCCCTGATATTATTGATGTTAGTATTAAGCAAGCCAATCAAGAATGCTCAAATGAAAGTCGAATTGTTACAGTCCATGAGCAAGATGGTAAGGTCTTGgtaggcccaaatatacttgctggtcaatatacacgtgctgtgtctccccc Alignment from Spaln_aa2Genome GACGTACAGTTATATTGTGATTTCCCTGATATTATTGATGTCAGTATTAAGCAAGCAAACCAGGAATGCTCAAATGAAAGTAGAATTGTAACTGTCCATAAACAAGATGGTAAAGTTTTG ttcatgtaagtataattattatgtcacacagaactgtcctttcccactagGATGTACAGTTATATTGTGGTTTCCCTGATATTATTGATGTTAGTATTAAGCAAGCCAATCAAGAATGCTCAAATGAAAGTCGAATTGTTACAGTCCATGAGCAAGATGGTAAGGTCTTGgtaggcccaaatatacttgctggtcaatatacacgtgctgtgtctccccc Alignment from Spaln_nt2Genome GACGTACAGTTATATTGTGATTTCCCTGATATTATTGATGTCAGTATTAAGCAAGCAAACCAGGAATGCTCAAATGAAAGTAGAATTGTAACTGTCCATAAACAAGATGGTAAAGTTTTG ttcatgtaagtataattattatgtcacacagaactgtcctttcccactagGATGTACAGTTATATTGTGGTTTCCCTGATATTATTGATGTTAGTATTAAGCAAGCCAATCAAGAATGCTCAAATGAAAGTCGAATTGTTACAGTCCATGAGCAAGATGGTAAGGTCTTGgtaggcccaaatatacttgctggtcaatatacacgtgctgtgtctccccc Alignment from Pairagon GACGTACAGTTATATTGTGATTTCCCTGATATTATTGATGTCAGTATTAAGCAAGCAAACCAGGAATGCTCAAATGAAAGTAGAATTGTAACTGTCCATAAACAAGATGGTAAAGTTTTG ttcatgtaagtataattattatgtcacacagaactgtcctttcccactagGATGTACAGTTATATTGTGGTTTCCCTGATATTATTGATGTTAGTATTAAGCAAGCCAATCAAGAATGCTCAAATGAAAGTCGAATTGTTACAGTCCATGAGCAAGATGGTAAGGTCTTGgtaggcccaaatatacttgctggtcaatatacacgtgctgtgtctccccc Alignment from Exonerate_protein2genome GACGTACAGTTATATTGTGATTTCCCTGATATTATTGATGTCAGTATTAAGCAAGCAAACCAGGAATGCTCAAATGAAAGTAGAATTGTAACTGTCCATAAACAAGATGGTAAAGTTTTG ttcatgtaagtataattattatgtcacacagaactgtcctttcccactagGATGTACAGTTATATTGTGGTTTCCCTGATATTATTGATGTTAGTATTAAGCAAGCCAATCAAGAATGCTCAAATGAAAGTCGAATTGTTACAGTCCATGAGCAAGATGGTAAGGTCTTGgtaggcccaaatatacttgctggtcaatatacacgtgctgtgtctccccc Alignment from Exonerate_coding2genome GACGTACAGTTATATTGTGATTTCCCTGATATTATTGATGTCAGTATTAAGCAAGCAAACCAGGAATGCTCAAATGAAAGTAGAATTGTAACTGTCCATAAACAAGATGGTAAAGTTTTG ttcatgtaagtataattattatgtcacacagaactgtcctttcccactagGATGTACAGTTATATTGTGGTTTCCCTGATATTATTGATGTTAGTATTAAGCAAGCCAATCAAGAATGCTCAAATGAAAGTCGAATTGTTACAGTCCATGAGCAAGATGGTAAGGTCTTGgtaggcccaaatatacttgctggtcaatatacacgtgctgtgtctccccc Alignment from GeneWise GACGTACAGTTATATTGTGATTTCCCTGATATTATTGATGTCAGTATTAAGCAAGCAAACCAGGAATGCTCAAATGAAAGTAGAATTGTAACTGTCCATAAACAAGATGGTAAAGTTTTG ttcatgtaagtataattattatgtcacacagaactgtcctttcccactagGATGTACAGTTATATTGTGGTTTCCCTGATATTATTGATGTTAGTATTAAGCAAGCCAATCAAGAATGCTCAAATGAAAGTCGAATTGTTACAGTCCATGAGCAAGATGGTAAGGTCTTGgtaggcccaaatatacttgctggtcaatatacacgtgctgtgtctccccc #### Jak2_ID6235_11 --> 0 - 0 Original Alignment AATGAAAGTCTTGGCCAAGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGAGATTATGGTCAACTGCACAAAACGGAAGTTCTTTTGAAAGTCCTAGATAAAGCACATAGGAACTATTCAGAG ttcccagtcattgtgctcctcttgtttcgtgtaatgtgccatttgtatagAATGAGAGTCTTGGCCATGGTACTTTTACAAAAATATTTAAAGGTGTAAGAAGGGAAGTTGGGGATTATGGCCAATTGCACAAAACAGAAGTTCTTTTGAAAGTCCTAGATAAAGGACACAGGAACTATTCAGAAgtaggtttggttcaattgttagtggacttattacacagatttgaacatat Alignment from CESAR AATGAAAGTCTTGGCCAAGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGAGATTATGGTCAACTGCACAAAACGGAAGTTCTTTTGAAAGTCCTAGATAAAGCACATAGGAACTATTCAGAG ttcccagtcattgtgctcctcttgtttcgtgtaatgtgccatttgtatagAATGAGAGTCTTGGCCATGGTACTTTTACAAAAATATTTAAAGGTGTAAGAAGGGAAGTTGGGGATTATGGCCAATTGCACAAAACAGAAGTTCTTTTGAAAGTCCTAGATAAAGGACACAGGAACTATTCAGAAgtaggtttggttcaattgttagtggacttattacacagatttgaacatat Alignment from Spaln_aa2Genome AATGAAAGTCTTGGCCAAGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGAGATTATGGTCAACTGCACAAAACGGAAGTTCTTTTGAAAGTCCTAGATAAAGCACATAGGAACTATTCAGAG ttcccagtcattgtgctcctcttgtttcgtgtaatgtgccatttgtatagAATGAGAGTCTTGGCCATGGTACTTTTACAAAAATATTTAAAGGTGTAAGAAGGGAAGTTGGGGATTATGGCCAATTGCACAAAACAGAAGTTCTTTTGAAAGTCCTAGATAAAGGACACAGGAACTATTCAGAAgtaggtttggttcaattgttagtggacttattacacagatttgaacatat Alignment from Spaln_nt2Genome AATGAAAGTCTTGGCCAAGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGAGATTATGGTCAACTGCACAAAACGGAAGTTCTTTTGAAAGTCCTAGATAAAGCACATAGGAACTATTCAGAG ttcccagtcattgtgctcctcttgtttcgtgtaatgtgccatttgtatagAATGAGAGTCTTGGCCATGGTACTTTTACAAAAATATTTAAAGGTGTAAGAAGGGAAGTTGGGGATTATGGCCAATTGCACAAAACAGAAGTTCTTTTGAAAGTCCTAGATAAAGGACACAGGAACTATTCAGAAgtaggtttggttcaattgttagtggacttattacacagatttgaacatat Alignment from Pairagon AATGAAAGTCTTGGCCAAGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGAGATTATGGTCAACTGCACAAAACGGAAGTTCTTTTGAAAGTCCTAGATAAAGCACATAGGAACTATTCAGAG ttcccagtcattgtgctcctcttgtttcgtgtaatgtgccatttgtatagAATGAGAGTCTTGGCCATGGTACTTTTACAAAAATATTTAAAGGTGTAAGAAGGGAAGTTGGGGATTATGGCCAATTGCACAAAACAGAAGTTCTTTTGAAAGTCCTAGATAAAGGACACAGGAACTATTCAGAAgtaggtttggttcaattgttagtggacttattacacagatttgaacatat Alignment from Exonerate_protein2genome AATGAAAGTCTTGGCCAAGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGAGATTATGGTCAACTGCACAAAACGGAAGTTCTTTTGAAAGTCCTAGATAAAGCACATAGGAACTATTCAGAG ttcccagtcattgtgctcctcttgtttcgtgtaatgtgccatttgtatagAATGAGAGTCTTGGCCATGGTACTTTTACAAAAATATTTAAAGGTGTAAGAAGGGAAGTTGGGGATTATGGCCAATTGCACAAAACAGAAGTTCTTTTGAAAGTCCTAGATAAAGGACACAGGAACTATTCAGAAgtaggtttggttcaattgttagtggacttattacacagatttgaacatat Alignment from Exonerate_coding2genome AATGAAAGTCTTGGCCAAGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGAGATTATGGTCAACTGCACAAAACGGAAGTTCTTTTGAAAGTCCTAGATAAAGCACATAGGAACTATTCAGAG ttcccagtcattgtgctcctcttgtttcgtgtaatgtgccatttgtatagAATGAGAGTCTTGGCCATGGTACTTTTACAAAAATATTTAAAGGTGTAAGAAGGGAAGTTGGGGATTATGGCCAATTGCACAAAACAGAAGTTCTTTTGAAAGTCCTAGATAAAGGACACAGGAACTATTCAGAAgtaggtttggttcaattgttagtggacttattacacagatttgaacatat Alignment from GeneWise AATGAAAGTCTTGGCCAAGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGAGATTATGGTCAACTGCACAAAACGGAAGTTCTTTTGAAAGTCCTAGATAAAGCACATAGGAACTATTCAGAG ttcccagtcattgtgctcctcttgtttcgtgtaatgtgccatttgtatagAATGAGAGTCTTGGCCATGGTACTTTTACAAAAATATTTAAAGGTGTAAGAAGGGAAGTTGGGGATTATGGCCAATTGCACAAAACAGAAGTTCTTTTGAAAGTCCTAGATAAAGGACACAGGAACTATTCAGAAgtaggtttggttcaattgttagtggacttattacacagatttgaacatat #### Jak2_ID6236_12 --> 0 - 1 Original Alignment TCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGTGTCTGTGTCTGTGGAGAGGAGa tcactgaaaattaggctgtaatttcttaacctctctcccttactccatagTCTTTCTTTGAAGCAGCAAGTATGATGACTCAGCTTTCTCATGAACATTTGGTTTTAAATTATGGTGTCTGTGTTTGTGGCGAGGAGagtgagtagtgcaggagacagtagacacacaaggcataggctcagatgcag Alignment from CESAR TCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGTGTCTGTGTCTGTGGAGAGGAGa tcactgaaaattaggctgtaatttcttaacctctctcccttactccatagTCTTTCTTTGAAGCAGCAAGTATGATGACTCAGCTTTCTCATGAACATTTGGTTTTAAATTATGGTGTCTGTGTTTGTGGCGAGGAGagtgagtagtgcaggagacagtagacacacaaggcataggctcagatgcag Alignment from Spaln_aa2Genome TCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGTGTCTGTGTCTGTGGAGAGGAGA tcactgaaaattaggctgtaatttcttaacctctctcccttactccatagTCTTTCTTTGAAGCAGCAAGTATGATGACTCAGCTTTCTCATGAACATTTGGTTTTAAATTATGGTGTCTGTGTTTGTGGCGAGGAGAgtgagtagtgcaggagacagtagacacacaaggcataggctcagatgcag Alignment from Spaln_nt2Genome TCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGTGTCTGTGTCTGTGGAGAGGAGA tcactgaaaattaggctgtaatttcttaacctctctcccttactccatagTCTTTCTTTGAAGCAGCAAGTATGATGACTCAGCTTTCTCATGAACATTTGGTTTTAAATTATGGTGTCTGTGTTTGTGGCGAGGAGAgtgagtagtgcaggagacagtagacacacaaggcataggctcagatgcag Alignment from Pairagon TCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGTGTCTGTGTCTGTGGAGAGGAGA tcactgaaaattaggctgtaatttcttaacctctctcccttactccatagTCTTTCTTTGAAGCAGCAAGTATGATGACTCAGCTTTCTCATGAACATTTGGTTTTAAATTATGGTGTCTGTGTTTGTGGCGAGGAGAgtgagtagtgcaggagacagtagacacacaaggcataggctcagatgcag Alignment from Exonerate_protein2genome TCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGTGTCTGTGTCTGTGGAGAGGAGA tcactgaaaattaggctgtaatttcttaacctctctcccttactccatagTCTTTCTTTGAAGCAGCAAGTATGATGACTCAGCTTTCTCATGAACATTTGGTTTTAAATTATGGTGTCTGTGTTTGTGGCGAGGAGAgtgagtagtgcaggagacagtagacacacaaggcataggctcagatgcag Alignment from Exonerate_coding2genome TCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGTGTCTGTGTCTGTGGAGAGGAGA tcactgaaaattaggctgtaatttcttaacctctctcccttactccatagTCTTTCTTTGAAGCAGCAAGTATGATGACTCAGCTTTCTCATGAACATTTGGTTTTAAATTATGGTGTCTGTGTTTGTGGCGAGGAGAgtgagtagtgcaggagacagtagacacacaaggcataggctcagatgcag Alignment from GeneWise TCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGTGTCTGTGTCTGTGGAGAGGAGA tcactgaaaattaggctgtaatttcttaacctctctcccttactccatagTCTTTCTTTGAAGCAGCAAGTATGATGACTCAGCTTTCTCATGAACATTTGGTTTTAAATTATGGTGTCTGTGTTTGTGGCGAGGAGAgtgagtagtgcaggagacagtagacacacaaggcataggctcagatgcag #### Jak2_ID6243_19 --> 2 - 0 Original Alignment gtCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG tggactaactcatagtggcatataaaactccttctctttcccttgactaggtAGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACTCCTGCAATACACATCTCAGATATGCAAGgtaagcaccacttcacatcatttttggtgcagcatgcatgctgaatgcac Alignment from CESAR gtCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG tggactaactcatagtggcatataaaactccttctctttcccttgactaggtAGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACTCCTGCAATACACATCTCAGATATGCAAGgtaagcaccacttcacatcatttttggtgcagcatgcatgctgaatgcac Alignment from Spaln_aa2Genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG tggactaactcatagtggcatataaaactccttctctttcccttgactagGTAGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACTCCTGCAATACACATCTCAGATATGCAAGgtaagcaccacttcacatcatttttggtgcagcatgcatgctgaatgcac Alignment from Spaln_nt2Genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG tggactaactcatagtggcatataaaactccttctctttcccttgactagGTAGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACTCCTGCAATACACATCTCAGATATGCAAGgtaagcaccacttcacatcatttttggtgcagcatgcatgctgaatgcac Alignment from Pairagon GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG tggactaactcatagtggcatataaaactccttctctttcccttgactagGTAGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACTCCTGCAATACACATCTCAGATATGCAAGgtaagcaccacttcacatcatttttggtgcagcatgcatgctgaatgcac Alignment from Exonerate_protein2genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG tggactaactcatagtggcatataaaactccttctctttcccttgactagGTAGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACTCCTGCAATACACATCTCAGATATGCAAGgtaagcaccacttcacatcatttttggtgcagcatgcatgctgaatgcac Alignment from Exonerate_coding2genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG tggactaactcatagtggcatataaaactccttctctttcccttgactagGTAGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACTCCTGCAATACACATCTCAGATATGCAAGgtaagcaccacttcacatcatttttggtgcagcatgcatgctgaatgcac Alignment from GeneWise GCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG tggactaactcatagtggcatataaaactccttctctttcccttgactaggtagGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACTCCTGCAATACACATCTCAGATATGCAAGgtaagcaccacttcacatcatttttggtgcagcatgcatgctgaatgcac #### Kank1_ID5457_4 --> 2 - 2 Original Alignment taTGTCCAAATAATGAAAACACACTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCAAATGGAGCCAAAAAGAATCTTCAGTTCATTGGCATTAACGGCgg gatctaaattttctgcacagcagtgcttaattttataatccattaaacagttTGTCCAAATAATGAAAACACCCTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGACTCCAATGGGGCTAAAAAGAATCTTCAGTTCATTGGCATTAATGGTgggtgagtaagcagtagtggattccaggtagccaatggctcctcctgcttaa Alignment from CESAR taTGTCCAAATAATGAAAACACACTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCAAATGGAGCCAAAAAGAATCTTCAGTTCATTGGCATTAACGGCgg gatctaaattttctgcacagcagtgcttaattttataatccattaaacagttTGTCCAAATAATGAAAACACCCTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGACTCCAATGGGGCTAAAAAGAATCTTCAGTTCATTGGCATTAATGGTgggtgagtaagcagtagtggattccaggtagccaatggctcctcctgcttaa Alignment from Spaln_aa2Genome TATGTCCAAATAATGAAAACACACTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCAAATGGAGCCAAAAAGAATCTTCAGTTCATTGGCATTAACGGCGG gatctaaattttctgcacagcagtgcttaattttataatccattaaacagTTTGTCCAAATAATGAAAACACCCTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGACTCCAATGGGGCTAAAAAGAATCTTCAGTTCATTGGCATTAATGGTGGgtgagtaagcagtagtggattccaggtagccaatggctcctcctgcttaa Alignment from Spaln_nt2Genome TATGTCCAAATAATGAAAACACACTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCAAATGGAGCCAAAAAGAATCTTCAGTTCATTGGCATTAACGGCGG gatctaaattttctgcacagcagtgcttaattttataatccattaaacagTTTGTCCAAATAATGAAAACACCCTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGACTCCAATGGGGCTAAAAAGAATCTTCAGTTCATTGGCATTAATGGTGGgtgagtaagcagtagtggattccaggtagccaatggctcctcctgcttaa Alignment from Pairagon TATGTCCAAATAATGAAAACACACTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCAAATGGAGCCAAAAAGAATCTTCAGTTCATTGGCATTAACGGCGG gatctaaattttctgcacagcagtgcttaattttataatccattaaacagTTTGTCCAAATAATGAAAACACCCTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGACTCCAATGGGGCTAAAAAGAATCTTCAGTTCATTGGCATTAATGGTGGgtgagtaagcagtagtggattccaggtagccaatggctcctcctgcttaa Alignment from Exonerate_protein2genome TATGTCCAAATAATGAAAACACACTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCAAATGGAGCCAAAAAGAATCTTCAGTTCATTGGCATTAACGGCGG gatctaaattttctgcacagcagtgcttaattttataatccattaaacagTTTGTCCAAATAATGAAAACACCCTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGACTCCAATGGGGCTAAAAAGAATCTTCAGTTCATTGGCATTAATGGTGGgtgagtaagcagtagtggattccaggtagccaatggctcctcctgcttaa Alignment from Exonerate_coding2genome TATGTCCAAATAATGAAAACACACTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCAAATGGAGCCAAAAAGAATCTTCAGTTCATTGGCATTAACGGCGG gatctaaattttctgcacagcagtgcttaattttataatccattaaacagTTTGTCCAAATAATGAAAACACCCTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGACTCCAATGGGGCTAAAAAGAATCTTCAGTTCATTGGCATTAATGGTGGgtgagtaagcagtagtggattccaggtagccaatggctcctcctgcttaa Alignment from GeneWise TATGTCCAAATAATGAAAACACACTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCAAATGGAGCCAAAAAGAATCTTCAGTTCATTGGCATTAACGGCGG gatctaaattttctgcacagcagtgcttaattttataatccattaaacagTTTGTCCAAATAATGAAAACACCCTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGACTCCAATGGGGCTAAAAAGAATCTTCAGTTCATTGGCATTAATGGTGGgtgagtaagcagtagtggattccaggtagccaatggctcctcctgcttaa #### Kank1_ID5461_7 --> 0 - 1 Original Alignment AGGATCTGTCTGAACACCCTCCAGCACGATTGGTTC------CGAGTGTCCAGTCAGAAGTCCGCCGTGCCAGCCATGGTGGGCGACTACATCGCCGCGTTCGAGGCTGTCTCCCCGGACGTGCTCCGGTACATCATCAACATGGCGGACGGCAATGGCAACACTGCCCTCCACTACAGCGTGTCCCACTCCAACTTCCAGATCGTCAAGCTGCTTCTGGATGCAg ggggaggtagagggttaaggatagcataacctccaccctttctccgacagAGGGTCTGTCTGAACAATGTCCAGCATGATTGGTTCTGGTTCCGGGTAACCAGCCAGAAGTCTGCTGTGCCAGCCATGGCAGGTGAATACATTGCTGCCTTTGAC---GTATCTCCAGATGTGCTCCAATACACAATCAACATGGCTGATGGCAATGGTAACACCACCCTCCACTACAGTGTGCCTCATTCCAATTTCCAAATTGTAAAGCTGCTTCTAGATGCTggtgactcacccctgtagtcagcctgatagttcagagtctgacattttacc Alignment from CESAR AGGATCTGTCTGAACACCCTCCAGCACGAT------TGGTTCCGAGTGTCCAGTCAGAAGTCCGCCGTGCCAGCCATGGTGGGCGACTACATCGCCGCGTTCGAGGCTGTCTCCCCGGACGTGCTCCGGTACATCATCAACATGGCGGACGGCAATGGCAACACTGCCCTCCACTACAGCGTGTCCCACTCCAACTTCCAGATCGTCAAGCTGCTTCTGGATGCAg ggggaggtagagggttaaggatagcataacctccaccctttctccgacagAGGGTCTGTCTGAACAATGTCCAGCATGATTGGTTCTGGTTCCGGGTAACCAGCCAGAAGTCTGCTGTGCCAGCCATGGCAGGTGAATACATTGCTGCCTTTGAC---GTATCTCCAGATGTGCTCCAATACACAATCAACATGGCTGATGGCAATGGTAACACCACCCTCCACTACAGTGTGCCTCATTCCAATTTCCAAATTGTAAAGCTGCTTCTAGATGCTggtgactcacccctgtagtcagcctgatagttcagagtctgacattttacc Alignment from Spaln_aa2Genome AGGATCTGTCTGAACACCCTCCAGCACGAT------TGGTTCCGAGTGTCCAGTCAGAAGTCCGCCGTGCCAGCCATGGTGGGCGACTACATCGCCGCGTTCGAGGCTGTCTCCCCGGACGTGCTCCGGTACATCATCAACATGGCGGACGGCAATGGCAACACTGCCCTCCACTACAGCGTGTCCCACTCCAACTTCCAGATCGTCAAGCTGCTTCTGGATGCAG ggggaggtagagggttaaggatagcataacctccaccctttctccgacagAGGGTCTGTCTGAACAATGTCCAGCATGATTGGTTCTGGTTCCGGGTAACCAGCCAGAAGTCTGCTGTGCCAGCCATGGCAGGTGAATACATTGCTGCCTTTGAC---GTATCTCCAGATGTGCTCCAATACACAATCAACATGGCTGATGGCAATGGTAACACCACCCTCCACTACAGTGTGCCTCATTCCAATTTCCAAATTGTAAAGCTGCTTCTAGATGCTGgtgactcacccctgtagtcagcctgatagttcagagtctgacattttacc Alignment from Spaln_nt2Genome AGGATCTGTCTGAACACCCTCCAGCACGATTGGTTC------CGAGTGTCCAGTCAGAAGTCCGCCGTGCCAGCCATGGTGGGCGACTACATCGCCGCGTTCGAGGCTGTCTCCCCGGACGTGCTCCGGTACATCATCAACATGGCGGACGGCAATGGCAACACTGCCCTCCACTACAGCGTGTCCCACTCCAACTTCCAGATCGTCAAGCTGCTTCTGGATGCAG ggggaggtagagggttaaggatagcataacctccaccctttctccgacagAGGGTCTGTCTGAACAATGTCCAGCATGATTGGTTCTGGTTCCGGGTAACCAGCCAGAAGTCTGCTGTGCCAGCCATGGCAGGTGAATACATTGCTGCCTTTGA---CGTATCTCCAGATGTGCTCCAATACACAATCAACATGGCTGATGGCAATGGTAACACCACCCTCCACTACAGTGTGCCTCATTCCAATTTCCAAATTGTAAAGCTGCTTCTAGATGCTGgtgactcacccctgtagtcagcctgatagttcagagtctgacattttacc Alignment from Pairagon AGGATCTGTCTGAACACCCTCCAGCACGAT------TGGTTCCGAGTGTCCAGTCAGAAGTCCGCCGTGCCAGCCATGGTGGGCGACTACATCGCCGCGTTCGAGGCTGTCTCCCCGGACGTGCTCCGGTACATCATCAACATGGCGGACGGCAATGGCAACACTGCCCTCCACTACAGCGTGTCCCACTCCAACTTCCAGATCGTCAAGCTGCTTCTGGATGCAG ggggaggtagagggttaaggatagcataacctccaccctttctccgacagAGGGTCTGTCTGAACAATGTCCAGCATGATTGGTTCTGGTTCCGGGTAACCAGCCAGAAGTCTGCTGTGCCAGCCATGGCAGGTGAATACATTGCTGCCTTTGA---CGTATCTCCAGATGTGCTCCAATACACAATCAACATGGCTGATGGCAATGGTAACACCACCCTCCACTACAGTGTGCCTCATTCCAATTTCCAAATTGTAAAGCTGCTTCTAGATGCTGgtgactcacccctgtagtcagcctgatagttcagagtctgacattttacc Alignment from Exonerate_protein2genome AGGATCTGTCTGAACACCCTCCAGCACGAT------TGGTTCCGAGTGTCCAGTCAGAAGTCCGCCGTGCCAGCCATGGTGGGCGACTACATCGCCGCGTTCGAGGCTGTCTCCCCGGACGTGCTCCGGTACATCATCAACATGGCGGACGGCAATGGCAACACTGCCCTCCACTACAGCGTGTCCCACTCCAACTTCCAGATCGTCAAGCTGCTTCTGGATGCAG ggggaggtagagggttaaggatagcataacctccaccctttctccgacagAGGGTCTGTCTGAACAATGTCCAGCATGATTGGTTCTGGTTCCGGGTAACCAGCCAGAAGTCTGCTGTGCCAGCCATGGCAGGTGAATACATTGCTGCCTTTGAC---GTATCTCCAGATGTGCTCCAATACACAATCAACATGGCTGATGGCAATGGTAACACCACCCTCCACTACAGTGTGCCTCATTCCAATTTCCAAATTGTAAAGCTGCTTCTAGATGCTGgtgactcacccctgtagtcagcctgatagttcagagtctgacattttacc Alignment from Exonerate_coding2genome AGGATCTGTCTGAACACCCTCCAGCACGAT------TGGTTCCGAGTGTCCAGTCAGAAGTCCGCCGTGCCAGCCATGGTGGGCGACTACATCGCCGCGTTCGAGGCTGTCTCCCCGGACGTGCTCCGGTACATCATCAACATGGCGGACGGCAATGGCAACACTGCCCTCCACTACAGCGTGTCCCACTCCAACTTCCAGATCGTCAAGCTGCTTCTGGATGCAG ggggaggtagagggttaaggatagcataacctccaccctttctccgacagAGGGTCTGTCTGAACAATGTCCAGCATGATTGGTTCTGGTTCCGGGTAACCAGCCAGAAGTCTGCTGTGCCAGCCATGGCAGGTGAATACATTGCTGCCTTTGAC---GTATCTCCAGATGTGCTCCAATACACAATCAACATGGCTGATGGCAATGGTAACACCACCCTCCACTACAGTGTGCCTCATTCCAATTTCCAAATTGTAAAGCTGCTTCTAGATGCTGgtgactcacccctgtagtcagcctgatagttcagagtctgacattttacc Alignment from GeneWise AGGATCTGTCTGAACACCCTCCAGCACGATTGG------TTCCGAGTGTCCAGTCAGAAGTCCGCCGTGCCAGCCATGGTGGGCGACTACATCGCCGCGTTCGAGGCTGTCTCCCCGGACGTGCTCCGGTACATCATCAACATGGCGGACGGCAATGGCAACACTGCCCTCCACTACAGCGTGTCCCACTCCAACTTCCAGATCGTCAAGCTGCTTCTGGATGCAG ggggaggtagagggttaaggatagcataacctccaccctttctccgacagAGGGTCTGTCTGAACAATGTCCAGCATGATTGGTTCTGGTTCCGGGTAACCAGCCAGAAGTCTGCTGTGCCAGCCATGGCAGGTGAATACATTGCTGCCTTTGAC---GTATCTCCAGATGTGCTCCAATACACAATCAACATGGCTGATGGCAATGGTAACACCACCCTCCACTACAGTGTGCCTCATTCCAATTTCCAAATTGTAAAGCTGCTTCTAGATGCTGgtgactcacccctgtagtcagcctgatagttcagagtctgacattttacc #### Kank1_ID5463_9 --> 0 - 0 Original Alignment GCGGGACAGACGGCCCTCATGCTAGCTGTCAGTCACGGGCGGATAGACATGGTGAAGGGCCTGCTGGCCTGTGGAGCTGATGTCAATATCCAGGACGACGAGGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACAAT tttccccctattagtcagatcggtagttgggctttcttctcctgagccagCCAGGACAAACACCCCTTATGCTAGCTGTGACCCATGGGCGAACAGACATGGTGAAGGGCCTGCTTGCTTGTGGTGCTGATGTCAATATTGAGGAGGATGAAGGCTCCACAGGCCTAATGTGTGCGGGTGAACATGGGGATGTGGAGATTGTGAAGTTGCTGCTGGCTCAAGAGGGGTGTAATGGCCAACTGGAGGATAATgtaagtttgcttgtcctccgggtgtgatggggcatcagccgctactttct Alignment from CESAR GCGGGACAGACGGCCCTCATGCTAGCTGTCAGTCACGGGCGGATAGACATGGTGAAGGGCCTGCTGGCCTGTGGAGCTGATGTCAATATCCAGGACGACGAGGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACAAT tttccccctattagtcagatcggtagttgggctttcttctcctgagccagCCAGGACAAACACCCCTTATGCTAGCTGTGACCCATGGGCGAACAGACATGGTGAAGGGCCTGCTTGCTTGTGGTGCTGATGTCAATATTGAGGAGGATGAAGGCTCCACAGGCCTAATGTGTGCGGGTGAACATGGGGATGTGGAGATTGTGAAGTTGCTGCTGGCTCAAGAGGGGTGTAATGGCCAACTGGAGGATAATgtaagtttgcttgtcctccgggtgtgatggggcatcagccgctactttct Alignment from Spaln_aa2Genome GACAGACGGCCCTCATGCTAGCTGTCAGTCACGGGCGGATAGACATGGTGAAGGGCCTGCTGGCCTGTGGAGCTGATGTCAATATCCAGGACGACGAGGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACAAT tttccccctattagtcagatcggtagttgggctttcttctcctgagccagccagGACAAACACCCCTTATGCTAGCTGTGACCCATGGGCGAACAGACATGGTGAAGGGCCTGCTTGCTTGTGGTGCTGATGTCAATATTGAGGAGGATGAAGGCTCCACAGGCCTAATGTGTGCGGGTGAACATGGGGATGTGGAGATTGTGAAGTTGCTGCTGGCTCAAGAGGGGTGTAATGGCCAACTGGAGGATAATgtaagtttgcttgtcctccgggtgtgatggggcatcagccgctactttct Alignment from Spaln_nt2Genome GCGGGACAGACGGCCCTCATGCTAGCTGTCAGTCACGGGCGGATAGACATGGTGAAGGGCCTGCTGGCCTGTGGAGCTGATGTCAATATCCAGGACGACGAGGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACAAT tttccccctattagtcagatcggtagttgggctttcttctcctgagccagCCAGGACAAACACCCCTTATGCTAGCTGTGACCCATGGGCGAACAGACATGGTGAAGGGCCTGCTTGCTTGTGGTGCTGATGTCAATATTGAGGAGGATGAAGGCTCCACAGGCCTAATGTGTGCGGGTGAACATGGGGATGTGGAGATTGTGAAGTTGCTGCTGGCTCAAGAGGGGTGTAATGGCCAACTGGAGGATAATgtaagtttgcttgtcctccgggtgtgatggggcatcagccgctactttct Alignment from Pairagon GCGGGACAGACGGCCCTCATGCTAGCTGTCAGTCACGGGCGGATAGACATGGTGAAGGGCCTGCTGGCCTGTGGAGCTGATGTCAATATCCAGGACGACGAGGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACAAT tttccccctattagtcagatcggtagttgggctttcttctcctgagccagCCAGGACAAACACCCCTTATGCTAGCTGTGACCCATGGGCGAACAGACATGGTGAAGGGCCTGCTTGCTTGTGGTGCTGATGTCAATATTGAGGAGGATGAAGGCTCCACAGGCCTAATGTGTGCGGGTGAACATGGGGATGTGGAGATTGTGAAGTTGCTGCTGGCTCAAGAGGGGTGTAATGGCCAACTGGAGGATAATgtaagtttgcttgtcctccgggtgtgatggggcatcagccgctactttct Alignment from Exonerate_protein2genome GCGGGACAGACGGCCCTCATGCTAGCTGTCAGTCACGGGCGGATAGACATGGTGAAGGGCCTGCTGGCCTGTGGAGCTGATGTCAATATCCAGGACGACGAGGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACAAT tttccccctattagtcagatcggtagttgggctttcttctcctgagccagCCAGGACAAACACCCCTTATGCTAGCTGTGACCCATGGGCGAACAGACATGGTGAAGGGCCTGCTTGCTTGTGGTGCTGATGTCAATATTGAGGAGGATGAAGGCTCCACAGGCCTAATGTGTGCGGGTGAACATGGGGATGTGGAGATTGTGAAGTTGCTGCTGGCTCAAGAGGGGTGTAATGGCCAACTGGAGGATAATgtaagtttgcttgtcctccgggtgtgatggggcatcagccgctactttct Alignment from Exonerate_coding2genome GCGGGACAGACGGCCCTCATGCTAGCTGTCAGTCACGGGCGGATAGACATGGTGAAGGGCCTGCTGGCCTGTGGAGCTGATGTCAATATCCAGGACGACGAGGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACAAT tttccccctattagtcagatcggtagttgggctttcttctcctgagccagCCAGGACAAACACCCCTTATGCTAGCTGTGACCCATGGGCGAACAGACATGGTGAAGGGCCTGCTTGCTTGTGGTGCTGATGTCAATATTGAGGAGGATGAAGGCTCCACAGGCCTAATGTGTGCGGGTGAACATGGGGATGTGGAGATTGTGAAGTTGCTGCTGGCTCAAGAGGGGTGTAATGGCCAACTGGAGGATAATgtaagtttgcttgtcctccgggtgtgatggggcatcagccgctactttct Alignment from GeneWise GCGGGACAGACGGCCCTCATGCTAGCTGTCAGTCACGGGCGGATAGACATGGTGAAGGGCCTGCTGGCCTGTGGAGCTGATGTCAATATCCAGGACGACGAGGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACAAT tttccccctattagtcagatcggtagttgggctttcttctcctgagccagCCAGGACAAACACCCCTTATGCTAGCTGTGACCCATGGGCGAACAGACATGGTGAAGGGCCTGCTTGCTTGTGGTGCTGATGTCAATATTGAGGAGGATGAAGGCTCCACAGGCCTAATGTGTGCGGGTGAACATGGGGATGTGGAGATTGTGAAGTTGCTGCTGGCTCAAGAGGGGTGTAATGGCCAACTGGAGGATAATgtaagtttgcttgtcctccgggtgtgatggggcatcagccgctactttct #### Kat5_ID1110_12 --> 2 - 2 Original Alignment gcTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCaa cctgtaccagggatgaaggtctgcagggccgcatctgtttccaaatccaggcTATGAACTCTCAAAAGTAGATGGGAAGACTGGCACCCCCGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTTATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCaagtgagtgaaagtgctaaccggggggatgtggtagggtttccacagatgga Alignment from CESAR gcTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCaa cctgtaccagggatgaaggtctgcagggccgcatctgtttccaaatccaggcTATGAACTCTCAAAAGTAGATGGGAAGACTGGCACCCCCGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTTATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCaagtgagtgaaagtgctaaccggggggatgtggtagggtttccacagatgga Alignment from Spaln_aa2Genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA cctgtaccagggatgaaggtctgcagggccgcatctgtttccaaatccagGCTATGAACTCTCAAAAGTAGATGGGAAGACTGGCACCCCCGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTTATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagtgaaagtgctaaccggggggatgtggtagggtttccacagatgga Alignment from Spaln_nt2Genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA cctgtaccagggatgaaggtctgcagggccgcatctgtttccaaatccagGCTATGAACTCTCAAAAGTAGATGGGAAGACTGGCACCCCCGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTTATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagtgaaagtgctaaccggggggatgtggtagggtttccacagatgga Alignment from Pairagon GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA cctgtaccagggatgaaggtctgcagggccgcatctgtttccaaatccagGCTATGAACTCTCAAAAGTAGATGGGAAGACTGGCACCCCCGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTTATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagtgaaagtgctaaccggggggatgtggtagggtttccacagatgga Alignment from Exonerate_protein2genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA cctgtaccagggatgaaggtctgcagggccgcatctgtttccaaatccagGCTATGAACTCTCAAAAGTAGATGGGAAGACTGGCACCCCCGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTTATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagtgaaagtgctaaccggggggatgtggtagggtttccacagatgga Alignment from Exonerate_coding2genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA cctgtaccagggatgaaggtctgcagggccgcatctgtttccaaatccagGCTATGAACTCTCAAAAGTAGATGGGAAGACTGGCACCCCCGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTTATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagtgaaagtgctaaccggggggatgtggtagggtttccacagatgga Alignment from GeneWise GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA cctgtaccagggatgaaggtctgcagggccgcatctgtttccaaatccagGCTATGAACTCTCAAAAGTAGATGGGAAGACTGGCACCCCCGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTTATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagtgaaagtgctaaccggggggatgtggtagggtttccacagatgga #### Kat5_ID1116_6 --> 0 - 0 Original Alignment AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG ctcataccagctcctgtgtcttctagcctaagtgattttgtttcttctagAAACGGAAGATTGAGGTAGTTTCGCCAACCAGTTTGGTGCCTAGTGAGACGGCTGCAGTCTCTGTTTTCCCTCAGgtaagacttcaaccgcttccttagagatagataagtttggtctttacttt Alignment from CESAR AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG ctcataccagctcctgtgtcttctagcctaagtgattttgtttcttctagAAACGGAAGATTGAGGTAGTTTCGCCAACCAGTTTGGTGCCTAGTGAGACGGCTGCAGTCTCTGTTTTCCCTCAGgtaagacttcaaccgcttccttagagatagataagtttggtctttacttt Alignment from Spaln_aa2Genome AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG ctcataccagctcctgtgtcttctagcctaagtgattttgtttcttctagAAACGGAAGATTGAGGTAGTTTCGCCAACCAGTTTGGTGCCTAGTGAGACGGCTGCAGTCTCTGTTTTCCCTCAGgtaagacttcaaccgcttccttagagatagataagtttggtctttacttt Alignment from Spaln_nt2Genome AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG ctcataccagctcctgtgtcttctagcctaagtgattttgtttcttctagAAACGGAAGATTGAGGTAGTTTCGCCAACCAGTTTGGTGCCTAGTGAGACGGCTGCAGTCTCTGTTTTCCCTCAGgtaagacttcaaccgcttccttagagatagataagtttggtctttacttt Alignment from Pairagon AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG ctcataccagctcctgtgtcttctagcctaagtgattttgtttcttctagAAACGGAAGATTGAGGTAGTTTCGCCAACCAGTTTGGTGCCTAGTGAGACGGCTGCAGTCTCTGTTTTCCCTCAGgtaagacttcaaccgcttccttagagatagataagtttggtctttacttt Alignment from Exonerate_protein2genome AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG ctcataccagctcctgtgtcttctagcctaagtgattttgtttcttctagAAACGGAAGATTGAGGTAGTTTCGCCAACCAGTTTGGTGCCTAGTGAGACGGCTGCAGTCTCTGTTTTCCCTCAGgtaagacttcaaccgcttccttagagatagataagtttggtctttacttt Alignment from Exonerate_coding2genome AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG ctcataccagctcctgtgtcttctagcctaagtgattttgtttcttctagAAACGGAAGATTGAGGTAGTTTCGCCAACCAGTTTGGTGCCTAGTGAGACGGCTGCAGTCTCTGTTTTCCCTCAGgtaagacttcaaccgcttccttagagatagataagtttggtctttacttt Alignment from GeneWise AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG ctcataccagctcctgtgtcttctagcctaagtgattttgtttcttctagAAACGGAAGATTGAGGTAGTTTCGCCAACCAGTTTGGTGCCTAGTGAGACGGCTGCAGTCTCTGTTTTCCCTCAGgtaagacttcaaccgcttccttagagatagataagtttggtctttacttt #### Kat5_ID1119_3 --> 2 - 1 Original Alignment ccCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACt ctccaggctggccccgatggctaaactctaacatttccactcctttttagcaTTGGCTGAGATCCTAAGTGTGAAGGACATAAGTGGCAGAAAGCTTTTCTATGTTTACTACATTGACtgtgcagcaagccacactagaagatggttactataaaagattagaaaatct Alignment from CESAR ccCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACt ctccaggctggccccgatggctaaactctaacatttccactcctttttagcaTTGGCTGAGATCCTAAGTGTGAAGGACATAAGTGGCAGAAAGCTTTTCTATGTTTACTACATTGACtgtgcagcaagccacactagaagatggttactataaaagattagaaaatct Alignment from Spaln_aa2Genome CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctccaggctggccccgatggctaaactctaacatttccactcctttttagCATTGGCTGAGATCCTAAGTGTGAAGGACATAAGTGGCAGAAAGCTTTTCTATGTTTACTACATTGACTgtgcagcaagccacactagaagatggttactataaaagattagaaaatct Alignment from Spaln_nt2Genome CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctccaggctggccccgatggctaaactctaacatttccactcctttttagCATTGGCTGAGATCCTAAGTGTGAAGGACATAAGTGGCAGAAAGCTTTTCTATGTTTACTACATTGACTgtgcagcaagccacactagaagatggttactataaaagattagaaaatct Alignment from Pairagon CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctccaggctggccccgatggctaaactctaacatttccactcctttttagCATTGGCTGAGATCCTAAGTGTGAAGGACATAAGTGGCAGAAAGCTTTTCTATGTTTACTACATTGACTgtgcagcaagccacactagaagatggttactataaaagattagaaaatct Alignment from Exonerate_protein2genome CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctccaggctggccccgatggctaaactctaacatttccactcctttttagCATTGGCTGAGATCCTAAGTGTGAAGGACATAAGTGGCAGAAAGCTTTTCTATGTTTACTACATTGACTgtgcagcaagccacactagaagatggttactataaaagattagaaaatct Alignment from Exonerate_coding2genome CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctccaggctggccccgatggctaaactctaacatttccactcctttttagCATTGGCTGAGATCCTAAGTGTGAAGGACATAAGTGGCAGAAAGCTTTTCTATGTTTACTACATTGACTgtgcagcaagccacactagaagatggttactataaaagattagaaaatct Alignment from GeneWise CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctccaggctggccccgatggctaaactctaacatttccactcctttttagCATTGGCTGAGATCCTAAGTGTGAAGGACATAAGTGGCAGAAAGCTTTTCTATGTTTACTACATTGACTgtgcagcaagccacactagaagatggttactataaaagattagaaaatct #### Kazald1_ID9301_3 --> 0 - 1 Original Alignment TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAg cacagggttattggccacagggttattgctcccttccctctgcatcccagTTCAGAGGTGGACCACAAGAATTTAAAGTGACCAGTTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGCTGTCTCACCCGAAATGCTCTTGGCCAAGCTGAAGCCTCCGCAACCCTGACAGTACTTACACCAggtgagtattagttctgggtggcaagatgtggcaggagtcacgttttaaga Alignment from CESAR TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAg cacagggttattggccacagggttattgctcccttccctctgcatcccagTTCAGAGGTGGACCACAAGAATTTAAAGTGACCAGTTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGCTGTCTCACCCGAAATGCTCTTGGCCAAGCTGAAGCCTCCGCAACCCTGACAGTACTTACACCAggtgagtattagttctgggtggcaagatgtggcaggagtcacgttttaaga Alignment from Spaln_aa2Genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG cacagggttattggccacagggttattgctcccttccctctgcatcccagTTCAGAGGTGGACCACAAGAATTTAAAGTGACCAGTTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGCTGTCTCACCCGAAATGCTCTTGGCCAAGCTGAAGCCTCCGCAACCCTGACAGTACTTACACCAGgtgagtattagttctgggtggcaagatgtggcaggagtcacgttttaaga Alignment from Spaln_nt2Genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG cacagggttattggccacagggttattgctcccttccctctgcatcccagTTCAGAGGTGGACCACAAGAATTTAAAGTGACCAGTTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGCTGTCTCACCCGAAATGCTCTTGGCCAAGCTGAAGCCTCCGCAACCCTGACAGTACTTACACCAGgtgagtattagttctgggtggcaagatgtggcaggagtcacgttttaaga Alignment from Pairagon TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG cacagggttattggccacagggttattgctcccttccctctgcatcccagTTCAGAGGTGGACCACAAGAATTTAAAGTGACCAGTTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGCTGTCTCACCCGAAATGCTCTTGGCCAAGCTGAAGCCTCCGCAACCCTGACAGTACTTACACCAGgtgagtattagttctgggtggcaagatgtggcaggagtcacgttttaaga Alignment from Exonerate_protein2genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG cacagggttattggccacagggttattgctcccttccctctgcatcccagTTCAGAGGTGGACCACAAGAATTTAAAGTGACCAGTTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGCTGTCTCACCCGAAATGCTCTTGGCCAAGCTGAAGCCTCCGCAACCCTGACAGTACTTACACCAGgtgagtattagttctgggtggcaagatgtggcaggagtcacgttttaaga Alignment from Exonerate_coding2genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG cacagggttattggccacagggttattgctcccttccctctgcatcccagTTCAGAGGTGGACCACAAGAATTTAAAGTGACCAGTTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGCTGTCTCACCCGAAATGCTCTTGGCCAAGCTGAAGCCTCCGCAACCCTGACAGTACTTACACCAGgtgagtattagttctgggtggcaagatgtggcaggagtcacgttttaaga Alignment from GeneWise TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG cacagggttattggccacagggttattgctcccttccctctgcatcccagTTCAGAGGTGGACCACAAGAATTTAAAGTGACCAGTTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGCTGTCTCACCCGAAATGCTCTTGGCCAAGCTGAAGCCTCCGCAACCCTGACAGTACTTACACCAGgtgagtattagttctgggtggcaagatgtggcaggagtcacgttttaaga #### Kcnip2_ID9604_8 --> 0 - 0 Original Alignment GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ggagtgctatgctacccttaaccatttagagttttctggcttttcttcagGAGATGATTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTATCCTGCACTCCGGGAGGAAGCCCCAAGAGAACACGTGGAGAGCTTCTTCCAAgtgagcggtgtaactttcggatcagtgagacatgtctagtctaggagtta Alignment from CESAR GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ggagtgctatgctacccttaaccatttagagttttctggcttttcttcagGAGATGATTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTATCCTGCACTCCGGGAGGAAGCCCCAAGAGAACACGTGGAGAGCTTCTTCCAAgtgagcggtgtaactttcggatcagtgagacatgtctagtctaggagtta Alignment from Spaln_aa2Genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ggagtgctatgctacccttaaccatttagagttttctggcttttcttcagGAGATGATTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTATCCTGCACTCCGGGAGGAAGCCCCAAGAGAACACGTGGAGAGCTTCTTCCAAgtgagcggtgtaactttcggatcagtgagacatgtctagtctaggagtta Alignment from Spaln_nt2Genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ggagtgctatgctacccttaaccatttagagttttctggcttttcttcagGAGATGATTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTATCCTGCACTCCGGGAGGAAGCCCCAAGAGAACACGTGGAGAGCTTCTTCCAAgtgagcggtgtaactttcggatcagtgagacatgtctagtctaggagtta Alignment from Pairagon GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ggagtgctatgctacccttaaccatttagagttttctggcttttcttcagGAGATGATTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTATCCTGCACTCCGGGAGGAAGCCCCAAGAGAACACGTGGAGAGCTTCTTCCAAgtgagcggtgtaactttcggatcagtgagacatgtctagtctaggagtta Alignment from Exonerate_protein2genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ggagtgctatgctacccttaaccatttagagttttctggcttttcttcagGAGATGATTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTATCCTGCACTCCGGGAGGAAGCCCCAAGAGAACACGTGGAGAGCTTCTTCCAAgtgagcggtgtaactttcggatcagtgagacatgtctagtctaggagtta Alignment from Exonerate_coding2genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ggagtgctatgctacccttaaccatttagagttttctggcttttcttcagGAGATGATTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTATCCTGCACTCCGGGAGGAAGCCCCAAGAGAACACGTGGAGAGCTTCTTCCAAgtgagcggtgtaactttcggatcagtgagacatgtctagtctaggagtta Alignment from GeneWise GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ggagtgctatgctacccttaaccatttagagttttctggcttttcttcagGAGATGATTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTATCCTGCACTCCGGGAGGAAGCCCCAAGAGAACACGTGGAGAGCTTCTTCCAAgtgagcggtgtaactttcggatcagtgagacatgtctagtctaggagtta #### Kcnip2_ID9605_7 --> 0 - 0 Original Alignment GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attcattattattcggtgtcttagatgccttgcctctctccacatgccagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGATAGATTGAATTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtaagaagcatgtgacagagtatgctgatatatgtcatcaaacacccttg Alignment from CESAR GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attcattattattcggtgtcttagatgccttgcctctctccacatgccagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGATAGATTGAATTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtaagaagcatgtgacagagtatgctgatatatgtcatcaaacacccttg Alignment from Spaln_aa2Genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attcattattattcggtgtcttagatgccttgcctctctccacatgccagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGATAGATTGAATTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtaagaagcatgtgacagagtatgctgatatatgtcatcaaacacccttg Alignment from Spaln_nt2Genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attcattattattcggtgtcttagatgccttgcctctctccacatgccagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGATAGATTGAATTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtaagaagcatgtgacagagtatgctgatatatgtcatcaaacacccttg Alignment from Pairagon GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attcattattattcggtgtcttagatgccttgcctctctccacatgccagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGATAGATTGAATTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtaagaagcatgtgacagagtatgctgatatatgtcatcaaacacccttg Alignment from Exonerate_protein2genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attcattattattcggtgtcttagatgccttgcctctctccacatgccagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGATAGATTGAATTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtaagaagcatgtgacagagtatgctgatatatgtcatcaaacacccttg Alignment from Exonerate_coding2genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attcattattattcggtgtcttagatgccttgcctctctccacatgccagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGATAGATTGAATTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtaagaagcatgtgacagagtatgctgatatatgtcatcaaacacccttg Alignment from GeneWise GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attcattattattcggtgtcttagatgccttgcctctctccacatgccagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGATAGATTGAATTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtaagaagcatgtgacagagtatgctgatatatgtcatcaaacacccttg #### Kcnip2_ID9610_2 --> 2 - 1 Original Alignment gcCACCCTCCAGGGCCCAGTAAAAAAGCCCTGAAGCAGCGTTTCCTCAAGCTGCTGCCGTGCTGCGGGCCCCAAGCCCTGCCCTCAGTCAGTGAAa agctctcatggctctgttaggccatgatatgccggtcctcatcccaccaggcCATCCGCCAGGACCCAGTAAAAAGGCCCTGAAGCAGCGTTTCCTCAAGCTGCTACCATGCTGTGGGCCCCAAGCACTGCCCTCAGTCAGTGAAagtaagcccatacccaggtcttcaagagcatgctctgtgttgccagtgggt Alignment from CESAR gcCACCCTCCAGGGCCCAGTAAAAAAGCCCTGAAGCAGCGTTTCCTCAAGCTGCTGCCGTGCTGCGGGCCCCAAGCCCTGCCCTCAGTCAGTGAAa agctctcatggctctgttaggccatgatatgccggtcctcatcccaccaggcCATCCGCCAGGACCCAGTAAAAAGGCCCTGAAGCAGCGTTTCCTCAAGCTGCTACCATGCTGTGGGCCCCAAGCACTGCCCTCAGTCAGTGAAagtaagcccatacccaggtcttcaagagcatgctctgtgttgccagtgggt Alignment from Spaln_aa2Genome GCCACCCTCCAGGGCCCAGTAAAAAAGCCCTGAAGCAGCGTTTCCTCAAGCTGCTGCCGTGCTGCGGGCCCCAAGCCCTGCCCTCAGTCAGTGAAA agctctcatggctctgttaggccatgatatgccggtcctcatcccaccagGCCATCCGCCAGGACCCAGTAAAAAGGCCCTGAAGCAGCGTTTCCTCAAGCTGCTACCATGCTGTGGGCCCCAAGCACTGCCCTCAGTCAGTGAAAgtaagcccatacccaggtcttcaagagcatgctctgtgttgccagtgggt Alignment from Spaln_nt2Genome GCCACCCTCCAGGGCCCAGTAAAAAAGCCCTGAAGCAGCGTTTCCTCAAGCTGCTGCCGTGCTGCGGGCCCCAAGCCCTGCCCTCAGTCAGTGAAA agctctcatggctctgttaggccatgatatgccggtcctcatcccaccagGCCATCCGCCAGGACCCAGTAAAAAGGCCCTGAAGCAGCGTTTCCTCAAGCTGCTACCATGCTGTGGGCCCCAAGCACTGCCCTCAGTCAGTGAAAgtaagcccatacccaggtcttcaagagcatgctctgtgttgccagtgggt Alignment from Pairagon GCCACCCTCCAGGGCCCAGTAAAAAAGCCCTGAAGCAGCGTTTCCTCAAGCTGCTGCCGTGCTGCGGGCCCCAAGCCCTGCCCTCAGTCAGTGAAA agctctcatggctctgttaggccatgatatgccggtcctcatcccaccagGCCATCCGCCAGGACCCAGTAAAAAGGCCCTGAAGCAGCGTTTCCTCAAGCTGCTACCATGCTGTGGGCCCCAAGCACTGCCCTCAGTCAGTGAAAgtaagcccatacccaggtcttcaagagcatgctctgtgttgccagtgggt Alignment from Exonerate_protein2genome GCCACCCTCCAGGGCCCAGTAAAAAAGCCCTGAAGCAGCGTTTCCTCAAGCTGCTGCCGTGCTGCGGGCCCCAAGCCCTGCCCTCAGTCAGTGAAA agctctcatggctctgttaggccatgatatgccggtcctcatcccaccagGCCATCCGCCAGGACCCAGTAAAAAGGCCCTGAAGCAGCGTTTCCTCAAGCTGCTACCATGCTGTGGGCCCCAAGCACTGCCCTCAGTCAGTGAAAgtaagcccatacccaggtcttcaagagcatgctctgtgttgccagtgggt Alignment from Exonerate_coding2genome GCCACCCTCCAGGGCCCAGTAAAAAAGCCCTGAAGCAGCGTTTCCTCAAGCTGCTGCCGTGCTGCGGGCCCCAAGCCCTGCCCTCAGTCAGTGAAA agctctcatggctctgttaggccatgatatgccggtcctcatcccaccagGCCATCCGCCAGGACCCAGTAAAAAGGCCCTGAAGCAGCGTTTCCTCAAGCTGCTACCATGCTGTGGGCCCCAAGCACTGCCCTCAGTCAGTGAAAgtaagcccatacccaggtcttcaagagcatgctctgtgttgccagtgggt Alignment from GeneWise GCCACCCTCCAGGGCCCAGTAAAAAAGCCCTGAAGCAGCGTTTCCTCAAGCTGCTGCCGTGCTGCGGGCCCCAAGCCCTGCCCTCAGTCAGTGAAA agctctcatggctctgttaggccatgatatgccggtcctcatcccaccagGCCATCCGCCAGGACCCAGTAAAAAGGCCCTGAAGCAGCGTTTCCTCAAGCTGCTACCATGCTGTGGGCCCCAAGCACTGCCCTCAGTCAGTGAAAgtaagcccatacccaggtcttcaagagcatgctctgtgttgccagtgggt #### Kdm2a_ID511_10 --> 0 - 1 Original Alignment GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGg cttgagaagtgacttaatagcatcctcctaggctctgcctttacttacagATTCCCAACAAATTCCATTATCCATTTTATTATGAAATGTGTTGGTATGTGTTGGAGCATTACATATACTGCATAACCAATCGGTCACATCTAACTAAAGATTTCCAGAAGGAATCACTGAGTATGggtgagctcaataaagcaaatgaaagattgttcccagtaaaaactccacat Alignment from CESAR GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGg cttgagaagtgacttaatagcatcctcctaggctctgcctttacttacagATTCCCAACAAATTCCATTATCCATTTTATTATGAAATGTGTTGGTATGTGTTGGAGCATTACATATACTGCATAACCAATCGGTCACATCTAACTAAAGATTTCCAGAAGGAATCACTGAGTATGggtgagctcaataaagcaaatgaaagattgttcccagtaaaaactccacat Alignment from Spaln_aa2Genome GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGG cttgagaagtgacttaatagcatcctcctaggctctgcctttacttacagATTCCCAACAAATTCCATTATCCATTTTATTATGAAATGTGTTGGTATGTGTTGGAGCATTACATATACTGCATAACCAATCGGTCACATCTAACTAAAGATTTCCAGAAGGAATCACTGAGTATGGgtgagctcaataaagcaaatgaaagattgttcccagtaaaaactccacat Alignment from Spaln_nt2Genome GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGG cttgagaagtgacttaatagcatcctcctaggctctgcctttacttacagATTCCCAACAAATTCCATTATCCATTTTATTATGAAATGTGTTGGTATGTGTTGGAGCATTACATATACTGCATAACCAATCGGTCACATCTAACTAAAGATTTCCAGAAGGAATCACTGAGTATGGgtgagctcaataaagcaaatgaaagattgttcccagtaaaaactccacat Alignment from Pairagon GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGG cttgagaagtgacttaatagcatcctcctaggctctgcctttacttacagATTCCCAACAAATTCCATTATCCATTTTATTATGAAATGTGTTGGTATGTGTTGGAGCATTACATATACTGCATAACCAATCGGTCACATCTAACTAAAGATTTCCAGAAGGAATCACTGAGTATGGgtgagctcaataaagcaaatgaaagattgttcccagtaaaaactccacat Alignment from Exonerate_protein2genome GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGG cttgagaagtgacttaatagcatcctcctaggctctgcctttacttacagATTCCCAACAAATTCCATTATCCATTTTATTATGAAATGTGTTGGTATGTGTTGGAGCATTACATATACTGCATAACCAATCGGTCACATCTAACTAAAGATTTCCAGAAGGAATCACTGAGTATGGgtgagctcaataaagcaaatgaaagattgttcccagtaaaaactccacat Alignment from Exonerate_coding2genome GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGG cttgagaagtgacttaatagcatcctcctaggctctgcctttacttacagATTCCCAACAAATTCCATTATCCATTTTATTATGAAATGTGTTGGTATGTGTTGGAGCATTACATATACTGCATAACCAATCGGTCACATCTAACTAAAGATTTCCAGAAGGAATCACTGAGTATGGgtgagctcaataaagcaaatgaaagattgttcccagtaaaaactccacat Alignment from GeneWise GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGG cttgagaagtgacttaatagcatcctcctaggctctgcctttacttacagATTCCCAACAAATTCCATTATCCATTTTATTATGAAATGTGTTGGTATGTGTTGGAGCATTACATATACTGCATAACCAATCGGTCACATCTAACTAAAGATTTCCAGAAGGAATCACTGAGTATGGgtgagctcaataaagcaaatgaaagattgttcccagtaaaaactccacat #### Kif11_ID7312_2 --> 1 - 0 Original Alignment aCCATTTAATCTGGCAGAGCGGAAAGCTAATGCCCACTCAGTAGTGGAATGTGACCATGCACGGAAAGAAGTCAGTGTACGGACTGCAGGGTTGACGGACAAGACCTCCAAGAAAACATACACGTTTGATATG gttatgtaatttcactcaagagtttctaatgtggggtggggtctttccagaCCATTTAACTTGGCAGACCGTAAGGCTAATGCTCACTCAGTATTAGATTGTGATCATGCACGGAAAGAAGTCAGTGTACGGAGTGCAGGGTTGACTGACAAGACGTCTAAGAAAAGTTATACTGTTGATATGgtaagcattgttttctatacactgaggtgttggtaatgtaggtgatgcta Alignment from CESAR aCCATTTAATCTGGCAGAGCGGAAAGCTAATGCCCACTCAGTAGTGGAATGTGACCATGCACGGAAAGAAGTCAGTGTACGGACTGCAGGGTTGACGGACAAGACCTCCAAGAAAACATACACGTTTGATATG gttatgtaatttcactcaagagtttctaatgtggggtggggtctttccagaCCATTTAACTTGGCAGACCGTAAGGCTAATGCTCACTCAGTATTAGATTGTGATCATGCACGGAAAGAAGTCAGTGTACGGAGTGCAGGGTTGACTGACAAGACGTCTAAGAAAAGTTATACTGTTGATATGgtaagcattgttttctatacactgaggtgttggtaatgtaggtgatgcta Alignment from Spaln_aa2Genome ACCATTTAATCTGGCAGAGCGGAAAGCTAATGCCCACTCAGTAGTGGAATGTGACCATGCACGGAAAGAAGTCAGTGTACGGACTGCAGGGTTGACGGACAAGACCTCCAAGAAAACATACACGTTTGATATG gttatgtaatttcactcaagagtttctaatgtggggtggggtctttccagACCATTTAACTTGGCAGACCGTAAGGCTAATGCTCACTCAGTATTAGATTGTGATCATGCACGGAAAGAAGTCAGTGTACGGAGTGCAGGGTTGACTGACAAGACGTCTAAGAAAAGTTATACTGTTGATATGgtaagcattgttttctatacactgaggtgttggtaatgtaggtgatgcta Alignment from Spaln_nt2Genome ACCATTTAATCTGGCAGAGCGGAAAGCTAATGCCCACTCAGTAGTGGAATGTGACCATGCACGGAAAGAAGTCAGTGTACGGACTGCAGGGTTGACGGACAAGACCTCCAAGAAAACATACACGTTTGATATG gttatgtaatttcactcaagagtttctaatgtggggtggggtctttccagACCATTTAACTTGGCAGACCGTAAGGCTAATGCTCACTCAGTATTAGATTGTGATCATGCACGGAAAGAAGTCAGTGTACGGAGTGCAGGGTTGACTGACAAGACGTCTAAGAAAAGTTATACTGTTGATATGgtaagcattgttttctatacactgaggtgttggtaatgtaggtgatgcta Alignment from Pairagon ACCATTTAATCTGGCAGAGCGGAAAGCTAATGCCCACTCAGTAGTGGAATGTGACCATGCACGGAAAGAAGTCAGTGTACGGACTGCAGGGTTGACGGACAAGACCTCCAAGAAAACATACACGTTTGATATG gttatgtaatttcactcaagagtttctaatgtggggtggggtctttccagACCATTTAACTTGGCAGACCGTAAGGCTAATGCTCACTCAGTATTAGATTGTGATCATGCACGGAAAGAAGTCAGTGTACGGAGTGCAGGGTTGACTGACAAGACGTCTAAGAAAAGTTATACTGTTGATATGgtaagcattgttttctatacactgaggtgttggtaatgtaggtgatgcta Alignment from Exonerate_protein2genome ACCATTTAATCTGGCAGAGCGGAAAGCTAATGCCCACTCAGTAGTGGAATGTGACCATGCACGGAAAGAAGTCAGTGTACGGACTGCAGGGTTGACGGACAAGACCTCCAAGAAAACATACACGTTTGATATG gttatgtaatttcactcaagagtttctaatgtggggtggggtctttccagACCATTTAACTTGGCAGACCGTAAGGCTAATGCTCACTCAGTATTAGATTGTGATCATGCACGGAAAGAAGTCAGTGTACGGAGTGCAGGGTTGACTGACAAGACGTCTAAGAAAAGTTATACTGTTGATATGgtaagcattgttttctatacactgaggtgttggtaatgtaggtgatgcta Alignment from Exonerate_coding2genome ACCATTTAATCTGGCAGAGCGGAAAGCTAATGCCCACTCAGTAGTGGAATGTGACCATGCACGGAAAGAAGTCAGTGTACGGACTGCAGGGTTGACGGACAAGACCTCCAAGAAAACATACACGTTTGATATG gttatgtaatttcactcaagagtttctaatgtggggtggggtctttccagACCATTTAACTTGGCAGACCGTAAGGCTAATGCTCACTCAGTATTAGATTGTGATCATGCACGGAAAGAAGTCAGTGTACGGAGTGCAGGGTTGACTGACAAGACGTCTAAGAAAAGTTATACTGTTGATATGgtaagcattgttttctatacactgaggtgttggtaatgtaggtgatgcta Alignment from GeneWise ACCATTTAATCTGGCAGAGCGGAAAGCTAATGCCCACTCAGTAGTGGAATGTGACCATGCACGGAAAGAAGTCAGTGTACGGACTGCAGGGTTGACGGACAAGACCTCCAAGAAAACATACACGTTTGATATG gttatgtaatttcactcaagagtttctaatgtggggtggggtctttccagACCATTTAACTTGGCAGACCGTAAGGCTAATGCTCACTCAGTATTAGATTGTGATCATGCACGGAAAGAAGTCAGTGTACGGAGTGCAGGGTTGACTGACAAGACGTCTAAGAAAAGTTATACTGTTGATATGgtaagcattgttttctatacactgaggtgttggtaatgtaggtgatgcta #### Kif11_ID7313_3 --> 0 - 2 Original Alignment GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCgc catgcattcaattgcttcacctgggtattctcttttttcttcatctttagGTTATTGGGGCATCTACAAAGCAGATTGATGTTTATCAAAGTGTTGTTTGTCCAATTCTAGATGATGTAATTATGGGCTACAATTGTACCATTTCTgtgtaagtaacaactgtcttcttgagtttggatcatatgtatgggaatttct Alignment from CESAR GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCgc catgcattcaattgcttcacctgggtattctcttttttcttcatctttagGTTATTGGGGCATCTACAAAGCAGATTGATGTTTATCAAAGTGTTGTTTGTCCAATTCTAGATGATGTAATTATGGGCTACAATTGTACCATTTCTgtgtaagtaacaactgtcttcttgagtttggatcatatgtatgggaatttct Alignment from Spaln_aa2Genome GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC catgcattcaattgcttcacctgggtattctcttttttcttcatctttagGTTATTGGGGCATCTACAAAGCAGATTGATGTTTATCAAAGTGTTGTTTGTCCAATTCTAGATGATGTAATTATGGGCTACAATTGTACCATTTCTGTgtaagtaacaactgtcttcttgagtttggatcatatgtatgggaatttct Alignment from Spaln_nt2Genome GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC catgcattcaattgcttcacctgggtattctcttttttcttcatctttagGTTATTGGGGCATCTACAAAGCAGATTGATGTTTATCAAAGTGTTGTTTGTCCAATTCTAGATGATGTAATTATGGGCTACAATTGTACCATTTCTGTgtaagtaacaactgtcttcttgagtttggatcatatgtatgggaatttct Alignment from Pairagon GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC catgcattcaattgcttcacctgggtattctcttttttcttcatctttagGTTATTGGGGCATCTACAAAGCAGATTGATGTTTATCAAAGTGTTGTTTGTCCAATTCTAGATGATGTAATTATGGGCTACAATTGTACCATTTCTGTgtaagtaacaactgtcttcttgagtttggatcatatgtatgggaatttct Alignment from Exonerate_protein2genome GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC catgcattcaattgcttcacctgggtattctcttttttcttcatctttagGTTATTGGGGCATCTACAAAGCAGATTGATGTTTATCAAAGTGTTGTTTGTCCAATTCTAGATGATGTAATTATGGGCTACAATTGTACCATTTCTGTgtaagtaacaactgtcttcttgagtttggatcatatgtatgggaatttct Alignment from Exonerate_coding2genome GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC catgcattcaattgcttcacctgggtattctcttttttcttcatctttagGTTATTGGGGCATCTACAAAGCAGATTGATGTTTATCAAAGTGTTGTTTGTCCAATTCTAGATGATGTAATTATGGGCTACAATTGTACCATTTCTGTgtaagtaacaactgtcttcttgagtttggatcatatgtatgggaatttct Alignment from GeneWise GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC catgcattcaattgcttcacctgggtattctcttttttcttcatctttagGTTATTGGGGCATCTACAAAGCAGATTGATGTTTATCAAAGTGTTGTTTGTCCAATTCTAGATGATGTAATTATGGGCTACAATTGTACCATTTCTGTgtaagtaacaactgtcttcttgagtttggatcatatgtatgggaatttct #### Kif11_ID7323_13 --> 0 - 1 Original Alignment TTGCTTAACACGGTTAAAGAAACCACCAGGGCTGTATCTGGTCTACATTCTAAACTGGACCGCAAGAGAGCAATCGATGAGCACAACGCTGAAGCTCAGGAGAGCTTTGGCAAAAACCTCAACAGTCTGTTTAATAATATGGAAGAATTGATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTAGACGTTCATAAGACACTGTTTg aaggaagcacatgcaattcgagattgttaggtggttttcttctaatccagTTTCTTAACACAGTTAAAGAAACCACCAGGGCTGTATCCGGGCTACATTCTAAATTGGATCACAAGAGAGCTATTGATGAGCACAATGCTGAAGCTCAGGAGAGTTTTGGCAAAAACCTAAATAGTCTTTTTAATAATATGGAAGAATTAATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTGGATGTGCATAAAACACTGTTTggtatgcgtgaggcctctcacagtaattgaatttactgttatgtgatcaag Alignment from CESAR TTGCTTAACACGGTTAAAGAAACCACCAGGGCTGTATCTGGTCTACATTCTAAACTGGACCGCAAGAGAGCAATCGATGAGCACAACGCTGAAGCTCAGGAGAGCTTTGGCAAAAACCTCAACAGTCTGTTTAATAATATGGAAGAATTGATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTAGACGTTCATAAGACACTGTTTg aaggaagcacatgcaattcgagattgttaggtggttttcttctaatccagTTTCTTAACACAGTTAAAGAAACCACCAGGGCTGTATCCGGGCTACATTCTAAATTGGATCACAAGAGAGCTATTGATGAGCACAATGCTGAAGCTCAGGAGAGTTTTGGCAAAAACCTAAATAGTCTTTTTAATAATATGGAAGAATTAATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTGGATGTGCATAAAACACTGTTTggtatgcgtgaggcctctcacagtaattgaatttactgttatgtgatcaag Alignment from Spaln_aa2Genome TTGCTTAACACGGTTAAAGAAACCACCAGGGCTGTATCTGGTCTACATTCTAAACTGGACCGCAAGAGAGCAATCGATGAGCACAACGCTGAAGCTCAGGAGAGCTTTGGCAAAAACCTCAACAGTCTGTTTAATAATATGGAAGAATTGATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTAGACGTTCATAAGACACTGTTTG aaggaagcacatgcaattcgagattgttaggtggttttcttctaatccagTTTCTTAACACAGTTAAAGAAACCACCAGGGCTGTATCCGGGCTACATTCTAAATTGGATCACAAGAGAGCTATTGATGAGCACAATGCTGAAGCTCAGGAGAGTTTTGGCAAAAACCTAAATAGTCTTTTTAATAATATGGAAGAATTAATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTGGATGTGCATAAAACACTGTTTGgtatgcgtgaggcctctcacagtaattgaatttactgttatgtgatcaag Alignment from Spaln_nt2Genome TTGCTTAACACGGTTAAAGAAACCACCAGGGCTGTATCTGGTCTACATTCTAAACTGGACCGCAAGAGAGCAATCGATGAGCACAACGCTGAAGCTCAGGAGAGCTTTGGCAAAAACCTCAACAGTCTGTTTAATAATATGGAAGAATTGATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTAGACGTTCATAAGACACTGTTTG aaggaagcacatgcaattcgagattgttaggtggttttcttctaatccagTTTCTTAACACAGTTAAAGAAACCACCAGGGCTGTATCCGGGCTACATTCTAAATTGGATCACAAGAGAGCTATTGATGAGCACAATGCTGAAGCTCAGGAGAGTTTTGGCAAAAACCTAAATAGTCTTTTTAATAATATGGAAGAATTAATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTGGATGTGCATAAAACACTGTTTGgtatgcgtgaggcctctcacagtaattgaatttactgttatgtgatcaag Alignment from Pairagon TTGCTTAACACGGTTAAAGAAACCACCAGGGCTGTATCTGGTCTACATTCTAAACTGGACCGCAAGAGAGCAATCGATGAGCACAACGCTGAAGCTCAGGAGAGCTTTGGCAAAAACCTCAACAGTCTGTTTAATAATATGGAAGAATTGATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTAGACGTTCATAAGACACTGTTTG aaggaagcacatgcaattcgagattgttaggtggttttcttctaatccagTTTCTTAACACAGTTAAAGAAACCACCAGGGCTGTATCCGGGCTACATTCTAAATTGGATCACAAGAGAGCTATTGATGAGCACAATGCTGAAGCTCAGGAGAGTTTTGGCAAAAACCTAAATAGTCTTTTTAATAATATGGAAGAATTAATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTGGATGTGCATAAAACACTGTTTGgtatgcgtgaggcctctcacagtaattgaatttactgttatgtgatcaag Alignment from Exonerate_protein2genome TTGCTTAACACGGTTAAAGAAACCACCAGGGCTGTATCTGGTCTACATTCTAAACTGGACCGCAAGAGAGCAATCGATGAGCACAACGCTGAAGCTCAGGAGAGCTTTGGCAAAAACCTCAACAGTCTGTTTAATAATATGGAAGAATTGATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTAGACGTTCATAAGACACTGTTTG aaggaagcacatgcaattcgagattgttaggtggttttcttctaatccagTTTCTTAACACAGTTAAAGAAACCACCAGGGCTGTATCCGGGCTACATTCTAAATTGGATCACAAGAGAGCTATTGATGAGCACAATGCTGAAGCTCAGGAGAGTTTTGGCAAAAACCTAAATAGTCTTTTTAATAATATGGAAGAATTAATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTGGATGTGCATAAAACACTGTTTGgtatgcgtgaggcctctcacagtaattgaatttactgttatgtgatcaag Alignment from Exonerate_coding2genome TTGCTTAACACGGTTAAAGAAACCACCAGGGCTGTATCTGGTCTACATTCTAAACTGGACCGCAAGAGAGCAATCGATGAGCACAACGCTGAAGCTCAGGAGAGCTTTGGCAAAAACCTCAACAGTCTGTTTAATAATATGGAAGAATTGATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTAGACGTTCATAAGACACTGTTTG aaggaagcacatgcaattcgagattgttaggtggttttcttctaatccagTTTCTTAACACAGTTAAAGAAACCACCAGGGCTGTATCCGGGCTACATTCTAAATTGGATCACAAGAGAGCTATTGATGAGCACAATGCTGAAGCTCAGGAGAGTTTTGGCAAAAACCTAAATAGTCTTTTTAATAATATGGAAGAATTAATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTGGATGTGCATAAAACACTGTTTGgtatgcgtgaggcctctcacagtaattgaatttactgttatgtgatcaag Alignment from GeneWise TTGCTTAACACGGTTAAAGAAACCACCAGGGCTGTATCTGGTCTACATTCTAAACTGGACCGCAAGAGAGCAATCGATGAGCACAACGCTGAAGCTCAGGAGAGCTTTGGCAAAAACCTCAACAGTCTGTTTAATAATATGGAAGAATTGATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTAGACGTTCATAAGACACTGTTTG aaggaagcacatgcaattcgagattgttaggtggttttcttctaatccagTTTCTTAACACAGTTAAAGAAACCACCAGGGCTGTATCCGGGCTACATTCTAAATTGGATCACAAGAGAGCTATTGATGAGCACAATGCTGAAGCTCAGGAGAGTTTTGGCAAAAACCTAAATAGTCTTTTTAATAATATGGAAGAATTAATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTGGATGTGCATAAAACACTGTTTGgtatgcgtgaggcctctcacagtaattgaatttactgttatgtgatcaag #### Kif11_ID7324_14 --> 2 - 0 Original Alignment gtAACCTGATGTCTTCTAGTGTCTCTGCATTAGACACCATTACCACGACAGCACTTGAATCTCTCGTGTCTATTCCAGAAAATGTGTCCGCTCGTGTTTCTCAGATTTCTGATATGATATTGGAAGAGCAATCGTTAGCAGCACAAAGTAAAAGTGTTCTGCAAGGATTGATT gcaggttccaagatttaaccaatcaacttttctccttgccattgctccaggtAACCGGATGTCTTCTAGTGTCACTGCTTTAGACACAATTACCACAACAGCACTTGAATCTCTTGTGTCAATTCCAGAAAATGTGTCCACTCGTGTTTCTCAAATTTCTGATATGATATTGGAAGAGCAATCATTAGCGGCACAAAGCAAAAGTATTCTGCAAGGATTGATTgtacttaaatccctttatgttttcacatttatcaccttccaggataataa Alignment from CESAR gtAACCTGATGTCTTCTAGTGTCTCTGCATTAGACACCATTACCACGACAGCACTTGAATCTCTCGTGTCTATTCCAGAAAATGTGTCCGCTCGTGTTTCTCAGATTTCTGATATGATATTGGAAGAGCAATCGTTAGCAGCACAAAGTAAAAGTGTTCTGCAAGGATTGATT gcaggttccaagatttaaccaatcaacttttctccttgccattgctccaggtAACCGGATGTCTTCTAGTGTCACTGCTTTAGACACAATTACCACAACAGCACTTGAATCTCTTGTGTCAATTCCAGAAAATGTGTCCACTCGTGTTTCTCAAATTTCTGATATGATATTGGAAGAGCAATCATTAGCGGCACAAAGCAAAAGTATTCTGCAAGGATTGATTgtacttaaatccctttatgttttcacatttatcaccttccaggataataa Alignment from Spaln_aa2Genome GTAACCTGATGTCTTCTAGTGTCTCTGCATTAGACACCATTACCACGACAGCACTTGAATCTCTCGTGTCTATTCCAGAAAATGTGTCCGCTCGTGTTTCTCAGATTTCTGATATGATATTGGAAGAGCAATCGTTAGCAGCACAAAGTAAAAGTGTTCTGCAAGGATTGATT gcaggttccaagatttaaccaatcaacttttctccttgccattgctccagGTAACCGGATGTCTTCTAGTGTCACTGCTTTAGACACAATTACCACAACAGCACTTGAATCTCTTGTGTCAATTCCAGAAAATGTGTCCACTCGTGTTTCTCAAATTTCTGATATGATATTGGAAGAGCAATCATTAGCGGCACAAAGCAAAAGTATTCTGCAAGGATTGATTgtacttaaatccctttatgttttcacatttatcaccttccaggataataa Alignment from Spaln_nt2Genome GTAACCTGATGTCTTCTAGTGTCTCTGCATTAGACACCATTACCACGACAGCACTTGAATCTCTCGTGTCTATTCCAGAAAATGTGTCCGCTCGTGTTTCTCAGATTTCTGATATGATATTGGAAGAGCAATCGTTAGCAGCACAAAGTAAAAGTGTTCTGCAAGGATTGATT gcaggttccaagatttaaccaatcaacttttctccttgccattgctccagGTAACCGGATGTCTTCTAGTGTCACTGCTTTAGACACAATTACCACAACAGCACTTGAATCTCTTGTGTCAATTCCAGAAAATGTGTCCACTCGTGTTTCTCAAATTTCTGATATGATATTGGAAGAGCAATCATTAGCGGCACAAAGCAAAAGTATTCTGCAAGGATTGATTgtacttaaatccctttatgttttcacatttatcaccttccaggataataa Alignment from Pairagon GTAACCTGATGTCTTCTAGTGTCTCTGCATTAGACACCATTACCACGACAGCACTTGAATCTCTCGTGTCTATTCCAGAAAATGTGTCCGCTCGTGTTTCTCAGATTTCTGATATGATATTGGAAGAGCAATCGTTAGCAGCACAAAGTAAAAGTGTTCTGCAAGGATTGATT gcaggttccaagatttaaccaatcaacttttctccttgccattgctccagGTAACCGGATGTCTTCTAGTGTCACTGCTTTAGACACAATTACCACAACAGCACTTGAATCTCTTGTGTCAATTCCAGAAAATGTGTCCACTCGTGTTTCTCAAATTTCTGATATGATATTGGAAGAGCAATCATTAGCGGCACAAAGCAAAAGTATTCTGCAAGGATTGATTgtacttaaatccctttatgttttcacatttatcaccttccaggataataa Alignment from Exonerate_protein2genome GTAACCTGATGTCTTCTAGTGTCTCTGCATTAGACACCATTACCACGACAGCACTTGAATCTCTCGTGTCTATTCCAGAAAATGTGTCCGCTCGTGTTTCTCAGATTTCTGATATGATATTGGAAGAGCAATCGTTAGCAGCACAAAGTAAAAGTGTTCTGCAAGGATTGATT gcaggttccaagatttaaccaatcaacttttctccttgccattgctccagGTAACCGGATGTCTTCTAGTGTCACTGCTTTAGACACAATTACCACAACAGCACTTGAATCTCTTGTGTCAATTCCAGAAAATGTGTCCACTCGTGTTTCTCAAATTTCTGATATGATATTGGAAGAGCAATCATTAGCGGCACAAAGCAAAAGTATTCTGCAAGGATTGATTgtacttaaatccctttatgttttcacatttatcaccttccaggataataa Alignment from Exonerate_coding2genome GTAACCTGATGTCTTCTAGTGTCTCTGCATTAGACACCATTACCACGACAGCACTTGAATCTCTCGTGTCTATTCCAGAAAATGTGTCCGCTCGTGTTTCTCAGATTTCTGATATGATATTGGAAGAGCAATCGTTAGCAGCACAAAGTAAAAGTGTTCTGCAAGGATTGATT gcaggttccaagatttaaccaatcaacttttctccttgccattgctccagGTAACCGGATGTCTTCTAGTGTCACTGCTTTAGACACAATTACCACAACAGCACTTGAATCTCTTGTGTCAATTCCAGAAAATGTGTCCACTCGTGTTTCTCAAATTTCTGATATGATATTGGAAGAGCAATCATTAGCGGCACAAAGCAAAAGTATTCTGCAAGGATTGATTgtacttaaatccctttatgttttcacatttatcaccttccaggataataa Alignment from GeneWise GTAACCTGATGTCTTCTAGTGTCTCTGCATTAGACACCATTACCACGACAGCACTTGAATCTCTCGTGTCTATTCCAGAAAATGTGTCCGCTCGTGTTTCTCAGATTTCTGATATGATATTGGAAGAGCAATCGTTAGCAGCACAAAGTAAAAGTGTTCTGCAAGGATTGATT gcaggttccaagatttaaccaatcaacttttctccttgccattgctccagGTAACCGGATGTCTTCTAGTGTCACTGCTTTAGACACAATTACCACAACAGCACTTGAATCTCTTGTGTCAATTCCAGAAAATGTGTCCACTCGTGTTTCTCAAATTTCTGATATGATATTGGAAGAGCAATCATTAGCGGCACAAAGCAAAAGTATTCTGCAAGGATTGATTgtacttaaatccctttatgttttcacatttatcaccttccaggataataa #### Kif11_ID7328_18 --> 1 - 0 Original Alignment gAGGTCTACTGATATA---ATCAATAAAACAACAGTTCACAGTAAGAAAATTCTTGCTGAATCTGATGGATTATTACAAGAACTCAGACACTTTAACCAAGAAGGCACACAGCTGGTTGAAGAGTCTGTAGGACACTGCAGTTCACTCAACAGCAACCTGGAGACTGTATCCCAAGAGATCACCCAGAAGTGTGGGACCCTGAACACAAGCACAGTTCATTTCTCTGATCAGTGGGCATCCTGCCTAAGCAAGAGAAAGGAAGAACTTGAGAATTTAATGGAG attgaactgctccatctgtagtttggggcctgtgatgtttctgctgccaggAGGCCTACTGAGATAATAATCAATAAGATGACAGTCCACAGTAAGAAGGTACTGGCTGACTCTGGTGGATTATTACAGCAAGTGAGACACTTCAACCAGGAAGGCTCACAGCTAGCTGAAGAGTCTGTTGGACATTGCAGTTCACTCAACAGCAATGTAGAGACAGTATCCCAAGAGATTACCCAGAAGTGTGGGACCCTGAACACAAGTACTGTACATTTTTCTGACCAGTGGGCCTCCTGTTTAAGCAAGAGAAAAGAAAAACTTGAAAACTTGATGGAGgtatcctttccaccccagcagttcttcagagcaatacagcaatctggagt Alignment from CESAR gAGGTCTACTGATATA---ATCAATAAAACAACAGTTCACAGTAAGAAAATTCTTGCTGAATCTGATGGATTATTACAAGAACTCAGACACTTTAACCAAGAAGGCACACAGCTGGTTGAAGAGTCTGTAGGACACTGCAGTTCACTCAACAGCAACCTGGAGACTGTATCCCAAGAGATCACCCAGAAGTGTGGGACCCTGAACACAAGCACAGTTCATTTCTCTGATCAGTGGGCATCCTGCCTAAGCAAGAGAAAGGAAGAACTTGAGAATTTAATGGAG attgaactgctccatctgtagtttggggcctgtgatgtttctgctgccaggAGGCCTACTGAGATAATAATCAATAAGATGACAGTCCACAGTAAGAAGGTACTGGCTGACTCTGGTGGATTATTACAGCAAGTGAGACACTTCAACCAGGAAGGCTCACAGCTAGCTGAAGAGTCTGTTGGACATTGCAGTTCACTCAACAGCAATGTAGAGACAGTATCCCAAGAGATTACCCAGAAGTGTGGGACCCTGAACACAAGTACTGTACATTTTTCTGACCAGTGGGCCTCCTGTTTAAGCAAGAGAAAAGAAAAACTTGAAAACTTGATGGAGgtatcctttccaccccagcagttcttcagagcaatacagcaatctggagt Alignment from Spaln_aa2Genome GAGGTCTACTGAT---ATAATCAATAAAACAACAGTTCACAGTAAGAAAATTCTTGCTGAATCTGATGGATTATTACAAGAACTCAGACACTTTAACCAAGAAGGCACACAGCTGGTTGAAGAGTCTGTAGGACACTGCAGTTCACTCAACAGCAACCTGGAGACTGTATCCCAAGAGATCACCCAGAAGTGTGGGACCCTGAACACAAGCACAGTTCATTTCTCTGATCAGTGGGCATCCTGCCTAAGCAAGAGAAAGGAAGAACTTGAGAATTTAATGGAG attgaactgctccatctgtagtttggggcctgtgatgtttctgctgccagGAGGCCTACTGAGATAATAATCAATAAGATGACAGTCCACAGTAAGAAGGTACTGGCTGACTCTGGTGGATTATTACAGCAAGTGAGACACTTCAACCAGGAAGGCTCACAGCTAGCTGAAGAGTCTGTTGGACATTGCAGTTCACTCAACAGCAATGTAGAGACAGTATCCCAAGAGATTACCCAGAAGTGTGGGACCCTGAACACAAGTACTGTACATTTTTCTGACCAGTGGGCCTCCTGTTTAAGCAAGAGAAAAGAAAAACTTGAAAACTTGATGGAGgtatcctttccaccccagcagttcttcagagcaatacagcaatctggagt Alignment from Spaln_nt2Genome GAGGTCTACTGATATAAT---CAATAAAACAACAGTTCACAGTAAGAAAATTCTTGCTGAATCTGATGGATTATTACAAGAACTCAGACACTTTAACCAAGAAGGCACACAGCTGGTTGAAGAGTCTGTAGGACACTGCAGTTCACTCAACAGCAACCTGGAGACTGTATCCCAAGAGATCACCCAGAAGTGTGGGACCCTGAACACAAGCACAGTTCATTTCTCTGATCAGTGGGCATCCTGCCTAAGCAAGAGAAAGGAAGAACTTGAGAATTTAATGGAG attgaactgctccatctgtagtttggggcctgtgatgtttctgctgccagGAGGCCTACTGAGATAATAATCAATAAGATGACAGTCCACAGTAAGAAGGTACTGGCTGACTCTGGTGGATTATTACAGCAAGTGAGACACTTCAACCAGGAAGGCTCACAGCTAGCTGAAGAGTCTGTTGGACATTGCAGTTCACTCAACAGCAATGTAGAGACAGTATCCCAAGAGATTACCCAGAAGTGTGGGACCCTGAACACAAGTACTGTACATTTTTCTGACCAGTGGGCCTCCTGTTTAAGCAAGAGAAAAGAAAAACTTGAAAACTTGATGGAGgtatcctttccaccccagcagttcttcagagcaatacagcaatctggagt Alignment from Pairagon GAGGTCTACTGAT---ATAATCAATAAAACAACAGTTCACAGTAAGAAAATTCTTGCTGAATCTGATGGATTATTACAAGAACTCAGACACTTTAACCAAGAAGGCACACAGCTGGTTGAAGAGTCTGTAGGACACTGCAGTTCACTCAACAGCAACCTGGAGACTGTATCCCAAGAGATCACCCAGAAGTGTGGGACCCTGAACACAAGCACAGTTCATTTCTCTGATCAGTGGGCATCCTGCCTAAGCAAGAGAAAGGAAGAACTTGAGAATTTAATGGAG attgaactgctccatctgtagtttggggcctgtgatgtttctgctgccagGAGGCCTACTGAGATAATAATCAATAAGATGACAGTCCACAGTAAGAAGGTACTGGCTGACTCTGGTGGATTATTACAGCAAGTGAGACACTTCAACCAGGAAGGCTCACAGCTAGCTGAAGAGTCTGTTGGACATTGCAGTTCACTCAACAGCAATGTAGAGACAGTATCCCAAGAGATTACCCAGAAGTGTGGGACCCTGAACACAAGTACTGTACATTTTTCTGACCAGTGGGCCTCCTGTTTAAGCAAGAGAAAAGAAAAACTTGAAAACTTGATGGAGgtatcctttccaccccagcagttcttcagagcaatacagcaatctggagt Alignment from Exonerate_protein2genome GAGGTCTACTGAT---ATAATCAATAAAACAACAGTTCACAGTAAGAAAATTCTTGCTGAATCTGATGGATTATTACAAGAACTCAGACACTTTAACCAAGAAGGCACACAGCTGGTTGAAGAGTCTGTAGGACACTGCAGTTCACTCAACAGCAACCTGGAGACTGTATCCCAAGAGATCACCCAGAAGTGTGGGACCCTGAACACAAGCACAGTTCATTTCTCTGATCAGTGGGCATCCTGCCTAAGCAAGAGAAAGGAAGAACTTGAGAATTTAATGGAG attgaactgctccatctgtagtttggggcctgtgatgtttctgctgccagGAGGCCTACTGAGATAATAATCAATAAGATGACAGTCCACAGTAAGAAGGTACTGGCTGACTCTGGTGGATTATTACAGCAAGTGAGACACTTCAACCAGGAAGGCTCACAGCTAGCTGAAGAGTCTGTTGGACATTGCAGTTCACTCAACAGCAATGTAGAGACAGTATCCCAAGAGATTACCCAGAAGTGTGGGACCCTGAACACAAGTACTGTACATTTTTCTGACCAGTGGGCCTCCTGTTTAAGCAAGAGAAAAGAAAAACTTGAAAACTTGATGGAGgtatcctttccaccccagcagttcttcagagcaatacagcaatctggagt Alignment from Exonerate_coding2genome GAGGTCTACTGAT---ATAATCAATAAAACAACAGTTCACAGTAAGAAAATTCTTGCTGAATCTGATGGATTATTACAAGAACTCAGACACTTTAACCAAGAAGGCACACAGCTGGTTGAAGAGTCTGTAGGACACTGCAGTTCACTCAACAGCAACCTGGAGACTGTATCCCAAGAGATCACCCAGAAGTGTGGGACCCTGAACACAAGCACAGTTCATTTCTCTGATCAGTGGGCATCCTGCCTAAGCAAGAGAAAGGAAGAACTTGAGAATTTAATGGAG attgaactgctccatctgtagtttggggcctgtgatgtttctgctgccagGAGGCCTACTGAGATAATAATCAATAAGATGACAGTCCACAGTAAGAAGGTACTGGCTGACTCTGGTGGATTATTACAGCAAGTGAGACACTTCAACCAGGAAGGCTCACAGCTAGCTGAAGAGTCTGTTGGACATTGCAGTTCACTCAACAGCAATGTAGAGACAGTATCCCAAGAGATTACCCAGAAGTGTGGGACCCTGAACACAAGTACTGTACATTTTTCTGACCAGTGGGCCTCCTGTTTAAGCAAGAGAAAAGAAAAACTTGAAAACTTGATGGAGgtatcctttccaccccagcagttcttcagagcaatacagcaatctggagt Alignment from GeneWise GAGGTCTACTGAT---ATAATCAATAAAACAACAGTTCACAGTAAGAAAATTCTTGCTGAATCTGATGGATTATTACAAGAACTCAGACACTTTAACCAAGAAGGCACACAGCTGGTTGAAGAGTCTGTAGGACACTGCAGTTCACTCAACAGCAACCTGGAGACTGTATCCCAAGAGATCACCCAGAAGTGTGGGACCCTGAACACAAGCACAGTTCATTTCTCTGATCAGTGGGCATCCTGCCTAAGCAAGAGAAAGGAAGAACTTGAGAATTTAATGGAG attgaactgctccatctgtagtttggggcctgtgatgtttctgctgccagGAGGCCTACTGAGATAATAATCAATAAGATGACAGTCCACAGTAAGAAGGTACTGGCTGACTCTGGTGGATTATTACAGCAAGTGAGACACTTCAACCAGGAAGGCTCACAGCTAGCTGAAGAGTCTGTTGGACATTGCAGTTCACTCAACAGCAATGTAGAGACAGTATCCCAAGAGATTACCCAGAAGTGTGGGACCCTGAACACAAGTACTGTACATTTTTCTGACCAGTGGGCCTCCTGTTTAAGCAAGAGAAAAGAAAAACTTGAAAACTTGATGGAGgtatcctttccaccccagcagttcttcagagcaatacagcaatctggagt #### Kif20b_ID6997_2 --> 0 - 0 Original Alignment GCAAACAGTTTGGGATCTAAAAACTATCTTCAAGTTTGTCTTCGAATAAGACCATTTACACAGTCAGAAAAAGAACATGAGGCTGAG agggcctcatggtcattacttcatagtgcacgttgacttgtctttttcagGCAAACGGTATAGGCTCTAAAAACTATTTGCAAGTTTGTCTTCAAATACGACCGTTAACACGGTCAGCTAAGGAACATGAACCTGAGgtacaactagtggttactctcttcaggcagttagtgttttgcttctgact Alignment from CESAR GCAAACAGTTTGGGATCTAAAAACTATCTTCAAGTTTGTCTTCGAATAAGACCATTTACACAGTCAGAAAAAGAACATGAGGCTGAG agggcctcatggtcattacttcatagtgcacgttgacttgtctttttcagGCAAACGGTATAGGCTCTAAAAACTATTTGCAAGTTTGTCTTCAAATACGACCGTTAACACGGTCAGCTAAGGAACATGAACCTGAGgtacaactagtggttactctcttcaggcagttagtgttttgcttctgact Alignment from Spaln_aa2Genome GCAAACAGTTTGGGATCTAAAAACTATCTTCAAGTTTGTCTTCGAATAAGACCATTTACACAGTCAGAAAAAGAACATGAGGCTGAG agggcctcatggtcattacttcatagtgcacgttgacttgtctttttcagGCAAACGGTATAGGCTCTAAAAACTATTTGCAAGTTTGTCTTCAAATACGACCGTTAACACGGTCAGCTAAGGAACATGAACCTGAGgtacaactagtggttactctcttcaggcagttagtgttttgcttctgact Alignment from Spaln_nt2Genome GCAAACAGTTTGGGATCTAAAAACTATCTTCAAGTTTGTCTTCGAATAAGACCATTTACACAGTCAGAAAAAGAACATGAGGCTGAG agggcctcatggtcattacttcatagtgcacgttgacttgtctttttcagGCAAACGGTATAGGCTCTAAAAACTATTTGCAAGTTTGTCTTCAAATACGACCGTTAACACGGTCAGCTAAGGAACATGAACCTGAGgtacaactagtggttactctcttcaggcagttagtgttttgcttctgact Alignment from Pairagon GCAAACAGTTTGGGATCTAAAAACTATCTTCAAGTTTGTCTTCGAATAAGACCATTTACACAGTCAGAAAAAGAACATGAGGCTGAG agggcctcatggtcattacttcatagtgcacgttgacttgtctttttcagGCAAACGGTATAGGCTCTAAAAACTATTTGCAAGTTTGTCTTCAAATACGACCGTTAACACGGTCAGCTAAGGAACATGAACCTGAGgtacaactagtggttactctcttcaggcagttagtgttttgcttctgact Alignment from Exonerate_protein2genome GCAAACAGTTTGGGATCTAAAAACTATCTTCAAGTTTGTCTTCGAATAAGACCATTTACACAGTCAGAAAAAGAACATGAGGCTGAGGGCTGT agggcctcatggtcattacttcatagtgcacgttgacttgtctttttcagGCAAACGGTATAGGCTCTAAAAACTATTTGCAAGTTTGTCTTCAAATACGACCGTTAACACGGTCAGCTAAGGAACATGAACCTGAGGTACAActagtggttactctcttcaggcagttagtgttttgcttctgact Alignment from Exonerate_coding2genome GCAAACAGTTTGGGATCTAAAAACTATCTTCAAGTTTGTCTTCGAATAAGACCATTTACACAGTCAGAAAAAGAACATGAGGCTGAGGGCTGT agggcctcatggtcattacttcatagtgcacgttgacttgtctttttcagGCAAACGGTATAGGCTCTAAAAACTATTTGCAAGTTTGTCTTCAAATACGACCGTTAACACGGTCAGCTAAGGAACATGAACCTGAGGTACAActagtggttactctcttcaggcagttagtgttttgcttctgact Alignment from GeneWise GCAAACAGTTTGGGATCTAAAAACTATCTTCAAGTTTGTCTTCGAATAAGACCATTTACACAGTCAGAAAAAGAACATGAGGCTGAGGGCTGTGTG agggcctcatggtcattacttcatagtgcacgttgacttgtctttttcagGCAAACGGTATAGGCTCTAAAAACTATTTGCAAGTTTGTCTTCAAATACGACCGTTAACACGGTCAGCTAAGGAACATGAACCTGAGGTACAACTAgtggttactctcttcaggcagttagtgttttgcttctgact #### Kif20b_ID7007_12 --> 0 - 0 Original Alignment GTCTATGTTCCGGATACTTTAAGTTCTTCTCAAGAGAAATCTTTTGCATCTAACAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGATTTGGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTAGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAG ggctttctggtaatagctttacacaaaatcacagcccatgtgctccacagGTTTATGTACCTGATACGTTAAGTCCTTCTCAAAAGAAGTCCTTTGCATCTAATAAATCCTTACAAGAAGTTTCATTAGATAGTAATCTTGACAATAAGATACTAAATGTAAAAAGAAAAACTGTTTCGTGGGAAAACAGCCTAAAACATGTACTTGAAAATGAAGAA---GTTGAAGATTTAGAGGAGAATGAGGAAACTCAGAACATGGAA---GAACTTACTGATGAAGACAGTGACAGGTCCTTGGAGGAATGCAGGGTTTCTACTTGCTATAAGAAAAACAAGgtaaggttttgtgccttttgaatttgctcttggttaaaggagttatgatg Alignment from CESAR GTCTATGTTCCGGATACTTTAAGTTCTTCTCAAGAGAAATCTTTTGCATCTAACAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGATTTGGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTAGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAG ggctttctggtaatagctttacacaaaatcacagcccatgtgctccacagGTTTATGTACCTGATACGTTAAGTCCTTCTCAAAAGAAGTCCTTTGCATCTAATAAATCCTTACAAGAAGTTTCATTAGATAGTAATCTTGACAATAAGATACTAAATGTAAAAAGAAAAACTGTTTCGTGGGAAAACAGCCTAAAACATGTACTTGAAAATGAAGAA---GTTGAAGATTTAGAGGAGAATGAGGAAACTCAGAACATGGAA---GAACTTACTGATGAAGACAGTGACAGGTCCTTGGAGGAATGCAGGGTTTCTACTTGCTATAAGAAAAACAAGgtaaggttttgtgccttttgaatttgctcttggttaaaggagttatgatg Alignment from Spaln_aa2Genome GTCTATGTTCCGGATACTTTAAGTTCTTCTCAAGAGAAATCTTTTGCATCTAACAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGATTTGGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTAGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAG ggctttctggtaatagctttacacaaaatcacagcccatgtgctccacagGTTTATGTACCTGATACGTTAAGTCCTTCTCAAAAGAAGTCCTTTGCATCTAATAAATCCTTACAAGAAGTTTCATTAGATAGTAATCTTGACAATAAGATACTAAATGTAAAAAGAAAAACTGTTTCGTGGGAAAACAGCCTAAAACATGTACTTGAAAATGAAGAA---GTTGAAGATTTAGAGGAGAATGAGGAAACTCAGAACATGGAA---GAACTTACTGATGAAGACAGTGACAGGTCCTTGGAGGAATGCAGGGTTTCTACTTGCTATAAGAAAAACAAGgtaaggttttgtgccttttgaatttgctcttggttaaaggagttatgatg Alignment from Spaln_nt2Genome GTCTATGTTCCGGATACTTTAAGTTCTTCTCAAGAGAAATCTTTTGCATCTAACAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGATTTGGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTAGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAG ggctttctggtaatagctttacacaaaatcacagcccatgtgctccacagGTTTATGTACCTGATACGTTAAGTCCTTCTCAAAAGAAGTCCTTTGCATCTAATAAATCCTTACAAGAAGTTTCATTAGATAGTAATCTTGACAATAAGATACTAAATGTAAAAAGAAAAACTGTTTCGTGGGAAAACAGCCTAAAACATGTACTTGAAAATGAAGA---AGTTGAAGATTTAGAGGAGAATGAGGAAACTCAGAACATGGAA---GAACTTACTGATGAAGACAGTGACAGGTCCTTGGAGGAATGCAGGGTTTCTACTTGCTATAAGAAAAACAAGgtaaggttttgtgccttttgaatttgctcttggttaaaggagttatgatg Alignment from Pairagon GTCTATGTTCCGGATACTTTAAGTTCTTCTCAAGAGAAATCTTTTGCATCTAACAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGATTTGGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTAGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAG ggctttctggtaatagctttacacaaaatcacagcccatgtgctccacagGTTTATGTACCTGATACGTTAAGTCCTTCTCAAAAGAAGTCCTTTGCATCTAATAAATCCTTACAAGAAGTTTCATTAGATAGTAATCTTGACAATAAGATACTAAATGTAAAAAGAAAAACTGTTTCGTGGGAAAACAGCCTAAAACATGTACTTGAAAATGAAGA---AGTTGAAGATTTAGAGGAGAATGAGGAAACTCAGAACATGGAA---GAACTTACTGATGAAGACAGTGACAGGTCCTTGGAGGAATGCAGGGTTTCTACTTGCTATAAGAAAAACAAGgtaaggttttgtgccttttgaatttgctcttggttaaaggagttatgatg Alignment from Exonerate_protein2genome GTCTATGTTCCGGATACTTTAAGTTCTTCTCAAGAGAAATCTTTTGCATCTAACAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGATTTGGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTAGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAG ggctttctggtaatagctttacacaaaatcacagcccatgtgctccacagGTTTATGTACCTGATACGTTAAGTCCTTCTCAAAAGAAGTCCTTTGCATCTAATAAATCCTTACAAGAAGTTTCATTAGATAGTAATCTTGACAATAAGATACTAAATGTAAAAAGAAAAACTGTTTCGTGGGAAAACAGCCTAAAACATGTACTTGAAAATGAAGAA---GTTGAAGATTTAGAGGAGAATGAGGAAACTCAGAACATGGAA---GAACTTACTGATGAAGACAGTGACAGGTCCTTGGAGGAATGCAGGGTTTCTACTTGCTATAAGAAAAACAAGgtaaggttttgtgccttttgaatttgctcttggttaaaggagttatgatg Alignment from Exonerate_coding2genome GTCTATGTTCCGGATACTTTAAGTTCTTCTCAAGAGAAATCTTTTGCATCTAACAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGATTTGGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTAGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAG ggctttctggtaatagctttacacaaaatcacagcccatgtgctccacagGTTTATGTACCTGATACGTTAAGTCCTTCTCAAAAGAAGTCCTTTGCATCTAATAAATCCTTACAAGAAGTTTCATTAGATAGTAATCTTGACAATAAGATACTAAATGTAAAAAGAAAAACTGTTTCGTGGGAAAACAGCCTAAAACATGTACTTGAAAATGAAGAA---GTTGAAGATTTAGAGGAGAATGAGGAAACTCAGAACATGGAA---GAACTTACTGATGAAGACAGTGACAGGTCCTTGGAGGAATGCAGGGTTTCTACTTGCTATAAGAAAAACAAGgtaaggttttgtgccttttgaatttgctcttggttaaaggagttatgatg Alignment from GeneWise GTCTATGTTCCGGATACTTTAAGTTCTTCTCAAGAGAAATCTTTTGCATCTAACAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGATTTGGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTAGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAG ggctttctggtaatagctttacacaaaatcacagcccatgtgctccacagGTTTATGTACCTGATACGTTAAGTCCTTCTCAAAAGAAGTCCTTTGCATCTAATAAATCCTTACAAGAAGTTTCATTAGATAGTAATCTTGACAATAAGATACTAAATGTAAAAAGAAAAACTGTTTCGTGGGAAAACAGCCTAAAACATGTACTTGAAAATGAAGAA---GTTGAAGATTTAGAGGAGAATGAGGAAACTCAGAACATGGAA---GAACTTACTGATGAAGACAGTGACAGGTCCTTGGAGGAATGCAGGGTTTCTACTTGCTATAAGAAAAACAAGgtaaggttttgtgccttttgaatttgctcttggttaaaggagttatgatg #### Kif20b_ID7009_14 --> 1 - 0 Original Alignment gGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA tgatatttttgactaagtcatctattagtctgtgcttcttttctttgtagaGAAACAGTTATTCATCAGCAGGAAATATTGGAAGAAAATACCGAACGGTGTGTGTCAATTTTTGAAGACCTGGCAGGGAAGTGTGACAGTCAGGATGAACCAACAAATAAAACTTGTGATATAGAGCTAGACACTGAAgttagttgataatcacattgacattcaacactctctgacaagatctcctt Alignment from CESAR gGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA tgatatttttgactaagtcatctattagtctgtgcttcttttctttgtagaGAAACAGTTATTCATCAGCAGGAAATATTGGAAGAAAATACCGAACGGTGTGTGTCAATTTTTGAAGACCTGGCAGGGAAGTGTGACAGTCAGGATGAACCAACAAATAAAACTTGTGATATAGAGCTAGACACTGAAgttagttgataatcacattgacattcaacactctctgacaagatctcctt Alignment from Spaln_aa2Genome GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA tgatatttttgactaagtcatctattagtctgtgcttcttttctttgtagAGAAACAGTTATTCATCAGCAGGAAATATTGGAAGAAAATACCGAACGGTGTGTGTCAATTTTTGAAGACCTGGCAGGGAAGTGTGACAGTCAGGATGAACCAACAAATAAAACTTGTGATATAGAGCTAGACACTGAAgttagttgataatcacattgacattcaacactctctgacaagatctcctt Alignment from Spaln_nt2Genome GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA tgatatttttgactaagtcatctattagtctgtgcttcttttctttgtagAGAAACAGTTATTCATCAGCAGGAAATATTGGAAGAAAATACCGAACGGTGTGTGTCAATTTTTGAAGACCTGGCAGGGAAGTGTGACAGTCAGGATGAACCAACAAATAAAACTTGTGATATAGAGCTAGACACTGAAgttagttgataatcacattgacattcaacactctctgacaagatctcctt Alignment from Pairagon GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA tgatatttttgactaagtcatctattagtctgtgcttcttttctttgtagAGAAACAGTTATTCATCAGCAGGAAATATTGGAAGAAAATACCGAACGGTGTGTGTCAATTTTTGAAGACCTGGCAGGGAAGTGTGACAGTCAGGATGAACCAACAAATAAAACTTGTGATATAGAGCTAGACACTGAAgttagttgataatcacattgacattcaacactctctgacaagatctcctt Alignment from Exonerate_protein2genome GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA tgatatttttgactaagtcatctattagtctgtgcttcttttctttgtagAGAAACAGTTATTCATCAGCAGGAAATATTGGAAGAAAATACCGAACGGTGTGTGTCAATTTTTGAAGACCTGGCAGGGAAGTGTGACAGTCAGGATGAACCAACAAATAAAACTTGTGATATAGAGCTAGACACTGAAgttagttgataatcacattgacattcaacactctctgacaagatctcctt Alignment from Exonerate_coding2genome GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA tgatatttttgactaagtcatctattagtctgtgcttcttttctttgtagAGAAACAGTTATTCATCAGCAGGAAATATTGGAAGAAAATACCGAACGGTGTGTGTCAATTTTTGAAGACCTGGCAGGGAAGTGTGACAGTCAGGATGAACCAACAAATAAAACTTGTGATATAGAGCTAGACACTGAAgttagttgataatcacattgacattcaacactctctgacaagatctcctt Alignment from GeneWise GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA tgatatttttgactaagtcatctattagtctgtgcttcttttctttgtagAGAAACAGTTATTCATCAGCAGGAAATATTGGAAGAAAATACCGAACGGTGTGTGTCAATTTTTGAAGACCTGGCAGGGAAGTGTGACAGTCAGGATGAACCAACAAATAAAACTTGTGATATAGAGCTAGACACTGAAgttagttgataatcacattgacattcaacactctctgacaagatctcctt #### Kif20b_ID7010_15 --> 0 - 1 Original Alignment GAAGCTCATAATTATGTAGGAGTTGAAGATATTTTTCATTCTCTTCAAGATGATGTCACTGATATTAAGAAACAGGCCGAACTTGCTCATTTGTATATTACATCTCTTGTTGATCCCCAGGAAGCTATTGCCTGTTTGCAGCTAAAGTTTAATCAAGTTAAAGCAGAATTAGCTGAAACTAAAGAAGAATTAATTAAAGCCCAAGAAGAGCTAAAAAACAGAGAGAGCa tgctggcctaggaaatattacatgtcttctttctgtgctctgccctacagGAAGCTCATAACTATGTAGGAGTTGAAGATATTTTCCATTCACTTCAAGATGATGTCACTGATATTGAAAAACAGGCTGAACTTGCCCATTTATATACTACATCTCTAGTTGACCCCCAGGAAGCTATTGCCTGCTTGCAGTTGAAATTTAATCAGGTTAAAGCAGAATTGGCTGAAACCAAAGAAGAATTAATTAGAGCCCAAGAAGAACTAAAGAACAGAGAAAGCagtgagtgcaggtaggtcttttatgacaacctggaaagcgcagctgttgac Alignment from CESAR GAAGCTCATAATTATGTAGGAGTTGAAGATATTTTTCATTCTCTTCAAGATGATGTCACTGATATTAAGAAACAGGCCGAACTTGCTCATTTGTATATTACATCTCTTGTTGATCCCCAGGAAGCTATTGCCTGTTTGCAGCTAAAGTTTAATCAAGTTAAAGCAGAATTAGCTGAAACTAAAGAAGAATTAATTAAAGCCCAAGAAGAGCTAAAAAACAGAGAGAGCa tgctggcctaggaaatattacatgtcttctttctgtgctctgccctacagGAAGCTCATAACTATGTAGGAGTTGAAGATATTTTCCATTCACTTCAAGATGATGTCACTGATATTGAAAAACAGGCTGAACTTGCCCATTTATATACTACATCTCTAGTTGACCCCCAGGAAGCTATTGCCTGCTTGCAGTTGAAATTTAATCAGGTTAAAGCAGAATTGGCTGAAACCAAAGAAGAATTAATTAGAGCCCAAGAAGAACTAAAGAACAGAGAAAGCagtgagtgcaggtaggtcttttatgacaacctggaaagcgcagctgttgac Alignment from Spaln_aa2Genome GAAGCTCATAATTATGTAGGAGTTGAAGATATTTTTCATTCTCTTCAAGATGATGTCACTGATATTAAGAAACAGGCCGAACTTGCTCATTTGTATATTACATCTCTTGTTGATCCCCAGGAAGCTATTGCCTGTTTGCAGCTAAAGTTTAATCAAGTTAAAGCAGAATTAGCTGAAACTAAAGAAGAATTAATTAAAGCCCAAGAAGAGCTAAAAAACAGAGAGAGCA tgctggcctaggaaatattacatgtcttctttctgtgctctgccctacagGAAGCTCATAACTATGTAGGAGTTGAAGATATTTTCCATTCACTTCAAGATGATGTCACTGATATTGAAAAACAGGCTGAACTTGCCCATTTATATACTACATCTCTAGTTGACCCCCAGGAAGCTATTGCCTGCTTGCAGTTGAAATTTAATCAGGTTAAAGCAGAATTGGCTGAAACCAAAGAAGAATTAATTAGAGCCCAAGAAGAACTAAAGAACAGAGAAAGCAgtgagtgcaggtaggtcttttatgacaacctggaaagcgcagctgttgac Alignment from Spaln_nt2Genome GAAGCTCATAATTATGTAGGAGTTGAAGATATTTTTCATTCTCTTCAAGATGATGTCACTGATATTAAGAAACAGGCCGAACTTGCTCATTTGTATATTACATCTCTTGTTGATCCCCAGGAAGCTATTGCCTGTTTGCAGCTAAAGTTTAATCAAGTTAAAGCAGAATTAGCTGAAACTAAAGAAGAATTAATTAAAGCCCAAGAAGAGCTAAAAAACAGAGAGAGCA tgctggcctaggaaatattacatgtcttctttctgtgctctgccctacagGAAGCTCATAACTATGTAGGAGTTGAAGATATTTTCCATTCACTTCAAGATGATGTCACTGATATTGAAAAACAGGCTGAACTTGCCCATTTATATACTACATCTCTAGTTGACCCCCAGGAAGCTATTGCCTGCTTGCAGTTGAAATTTAATCAGGTTAAAGCAGAATTGGCTGAAACCAAAGAAGAATTAATTAGAGCCCAAGAAGAACTAAAGAACAGAGAAAGCAgtgagtgcaggtaggtcttttatgacaacctggaaagcgcagctgttgac Alignment from Pairagon GAAGCTCATAATTATGTAGGAGTTGAAGATATTTTTCATTCTCTTCAAGATGATGTCACTGATATTAAGAAACAGGCCGAACTTGCTCATTTGTATATTACATCTCTTGTTGATCCCCAGGAAGCTATTGCCTGTTTGCAGCTAAAGTTTAATCAAGTTAAAGCAGAATTAGCTGAAACTAAAGAAGAATTAATTAAAGCCCAAGAAGAGCTAAAAAACAGAGAGAGCA tgctggcctaggaaatattacatgtcttctttctgtgctctgccctacagGAAGCTCATAACTATGTAGGAGTTGAAGATATTTTCCATTCACTTCAAGATGATGTCACTGATATTGAAAAACAGGCTGAACTTGCCCATTTATATACTACATCTCTAGTTGACCCCCAGGAAGCTATTGCCTGCTTGCAGTTGAAATTTAATCAGGTTAAAGCAGAATTGGCTGAAACCAAAGAAGAATTAATTAGAGCCCAAGAAGAACTAAAGAACAGAGAAAGCAgtgagtgcaggtaggtcttttatgacaacctggaaagcgcagctgttgac Alignment from Exonerate_protein2genome GAAGCTCATAATTATGTAGGAGTTGAAGATATTTTTCATTCTCTTCAAGATGATGTCACTGATATTAAGAAACAGGCCGAACTTGCTCATTTGTATATTACATCTCTTGTTGATCCCCAGGAAGCTATTGCCTGTTTGCAGCTAAAGTTTAATCAAGTTAAAGCAGAATTAGCTGAAACTAAAGAAGAATTAATTAAAGCCCAAGAAGAGCTAAAAAACAGAGAGAGCA tgctggcctaggaaatattacatgtcttctttctgtgctctgccctacagGAAGCTCATAACTATGTAGGAGTTGAAGATATTTTCCATTCACTTCAAGATGATGTCACTGATATTGAAAAACAGGCTGAACTTGCCCATTTATATACTACATCTCTAGTTGACCCCCAGGAAGCTATTGCCTGCTTGCAGTTGAAATTTAATCAGGTTAAAGCAGAATTGGCTGAAACCAAAGAAGAATTAATTAGAGCCCAAGAAGAACTAAAGAACAGAGAAAGCAgtgagtgcaggtaggtcttttatgacaacctggaaagcgcagctgttgac Alignment from Exonerate_coding2genome GAAGCTCATAATTATGTAGGAGTTGAAGATATTTTTCATTCTCTTCAAGATGATGTCACTGATATTAAGAAACAGGCCGAACTTGCTCATTTGTATATTACATCTCTTGTTGATCCCCAGGAAGCTATTGCCTGTTTGCAGCTAAAGTTTAATCAAGTTAAAGCAGAATTAGCTGAAACTAAAGAAGAATTAATTAAAGCCCAAGAAGAGCTAAAAAACAGAGAGAGCA tgctggcctaggaaatattacatgtcttctttctgtgctctgccctacagGAAGCTCATAACTATGTAGGAGTTGAAGATATTTTCCATTCACTTCAAGATGATGTCACTGATATTGAAAAACAGGCTGAACTTGCCCATTTATATACTACATCTCTAGTTGACCCCCAGGAAGCTATTGCCTGCTTGCAGTTGAAATTTAATCAGGTTAAAGCAGAATTGGCTGAAACCAAAGAAGAATTAATTAGAGCCCAAGAAGAACTAAAGAACAGAGAAAGCAgtgagtgcaggtaggtcttttatgacaacctggaaagcgcagctgttgac Alignment from GeneWise GAAGCTCATAATTATGTAGGAGTTGAAGATATTTTTCATTCTCTTCAAGATGATGTCACTGATATTAAGAAACAGGCCGAACTTGCTCATTTGTATATTACATCTCTTGTTGATCCCCAGGAAGCTATTGCCTGTTTGCAGCTAAAGTTTAATCAAGTTAAAGCAGAATTAGCTGAAACTAAAGAAGAATTAATTAAAGCCCAAGAAGAGCTAAAAAACAGAGAGAGCA tgctggcctaggaaatattacatgtcttctttctgtgctctgccctacagGAAGCTCATAACTATGTAGGAGTTGAAGATATTTTCCATTCACTTCAAGATGATGTCACTGATATTGAAAAACAGGCTGAACTTGCCCATTTATATACTACATCTCTAGTTGACCCCCAGGAAGCTATTGCCTGCTTGCAGTTGAAATTTAATCAGGTTAAAGCAGAATTGGCTGAAACCAAAGAAGAATTAATTAGAGCCCAAGAAGAACTAAAGAACAGAGAAAGCAgtgagtgcaggtaggtcttttatgacaacctggaaagcgcagctgttgac #### Kif20b_ID7011_16 --> 2 - 0 Original Alignment acTCTTTGGTTCAGGCACTCAAGACATCAAGTAAG acattttttacatataaggactcttgtagctaattcctgcttctctgcagacCCCTTAGTTCAGCCACTCAAGACATCAAGTAAAgtaagtccacattggtgcagcctgaggctagtacaatcaatagatgtgat Alignment from CESAR acTCTTTGGTTCAGGCACTCAAGACATCAAGTAAG acattttttacatataaggactcttgtagctaattcctgcttctctgcagacCCCTTAGTTCAGCCACTCAAGACATCAAGTAAAgtaagtccacattggtgcagcctgaggctagtacaatcaatagatgtgat Alignment from Spaln_aa2Genome ACTCTTTGGTTCAGGCACTCAAGACATCAAGTAAG acattttttacatataaggactcttgtagctaattcctgcttctctgcagACCCCTTAGTTCAGCCACTCAAGACATCAAGTAAAgtaagtccacattggtgcagcctgaggctagtacaatcaatagatgtgat Alignment from Spaln_nt2Genome ACTCTTTGGTTCAGGCACTCAAGACATCAAGTAAG acattttttacatataaggactcttgtagctaattcctgcttctctgcagACCCCTTAGTTCAGCCACTCAAGACATCAAGTAAAgtaagtccacattggtgcagcctgaggctagtacaatcaatagatgtgat Alignment from Pairagon ACTCTTTGGTTCAGGCACTCAAGACATCAAGTAAG acattttttacatataaggactcttgtagctaattcctgcttctctgcagACCCCTTAGTTCAGCCACTCAAGACATCAAGTAAAgtaagtccacattggtgcagcctgaggctagtacaatcaatagatgtgat Alignment from Exonerate_protein2genome ACTCTTTGGTTCAGGCACTCAAGACATCAAGTAAG acattttttacatataaggactcttgtagctaattcctgcttctctgcagACCCCTTAGTTCAGCCACTCAAGACATCAAGTAAAgtaagtccacattggtgcagcctgaggctagtacaatcaatagatgtgat Alignment from Exonerate_coding2genome ACTCTTTGGTTCAGGCACTCAAGACATCAAGTAAG acattttttacatataaggactcttgtagctaattcctgcttctctgcagACCCCTTAGTTCAGCCACTCAAGACATCAAGTAAAgtaagtccacattggtgcagcctgaggctagtacaatcaatagatgtgat Alignment from GeneWise ACTCTTTGGTTCAGGCACTCAAGACATCAAGTAAG acattttttacatataaggactcttgtagctaattcctgcttctctgcagACCCCTTAGTTCAGCCACTCAAGACATCAAGTAAAgtaagtccacattggtgcagcctgaggctagtacaatcaatagatgtgat #### Kif20b_ID7017_22 --> 2 - 1 Original Alignment atCTCAGTGTTAAGGAGAAGCTGGTTGAAGACATGCGACTGACGCTAGTGGAGCAGGAGCAGACTCAGGCAGAGCAGGACCGGGTGCTCGAGGCCAAGTCAGAGGAAGCAGACTGGCTAGCCACAg aaatgactctgactgtccctaatgtaataatgtgaccactgcttttccagatCTCAGTGTTAAGGAGAAGTTAGTTGAAGATATGCGGTTGACACTAGTAGAACAGGAGCAAACTCAGTCCGAGCAGGACCGTGTGCTTGAGGCCAAATCAGAGGAGGCAGACTGGCTAGCCACTggtaagtataggaaaatggtactgtgtagatgcaattgaaccgatcattct Alignment from CESAR atCTCAGTGTTAAGGAGAAGCTGGTTGAAGACATGCGACTGACGCTAGTGGAGCAGGAGCAGACTCAGGCAGAGCAGGACCGGGTGCTCGAGGCCAAGTCAGAGGAAGCAGACTGGCTAGCCACAg aaatgactctgactgtccctaatgtaataatgtgaccactgcttttccagatCTCAGTGTTAAGGAGAAGTTAGTTGAAGATATGCGGTTGACACTAGTAGAACAGGAGCAAACTCAGTCCGAGCAGGACCGTGTGCTTGAGGCCAAATCAGAGGAGGCAGACTGGCTAGCCACTggtaagtataggaaaatggtactgtgtagatgcaattgaaccgatcattct Alignment from Spaln_aa2Genome ATCTCAGTGTTAAGGAGAAGCTGGTTGAAGACATGCGACTGACGCTAGTGGAGCAGGAGCAGACTCAGGCAGAGCAGGACCGGGTGCTCGAGGCCAAGTCAGAGGAAGCAGACTGGCTAGCCACAG aaatgactctgactgtccctaatgtaataatgtgaccactgcttttccagATCTCAGTGTTAAGGAGAAGTTAGTTGAAGATATGCGGTTGACACTAGTAGAACAGGAGCAAACTCAGTCCGAGCAGGACCGTGTGCTTGAGGCCAAATCAGAGGAGGCAGACTGGCTAGCCACTGgtaagtataggaaaatggtactgtgtagatgcaattgaaccgatcattct Alignment from Spaln_nt2Genome ATCTCAGTGTTAAGGAGAAGCTGGTTGAAGACATGCGACTGACGCTAGTGGAGCAGGAGCAGACTCAGGCAGAGCAGGACCGGGTGCTCGAGGCCAAGTCAGAGGAAGCAGACTGGCTAGCCACAG aaatgactctgactgtccctaatgtaataatgtgaccactgcttttccagATCTCAGTGTTAAGGAGAAGTTAGTTGAAGATATGCGGTTGACACTAGTAGAACAGGAGCAAACTCAGTCCGAGCAGGACCGTGTGCTTGAGGCCAAATCAGAGGAGGCAGACTGGCTAGCCACTGgtaagtataggaaaatggtactgtgtagatgcaattgaaccgatcattct Alignment from Pairagon ATCTCAGTGTTAAGGAGAAGCTGGTTGAAGACATGCGACTGACGCTAGTGGAGCAGGAGCAGACTCAGGCAGAGCAGGACCGGGTGCTCGAGGCCAAGTCAGAGGAAGCAGACTGGCTAGCCACAG aaatgactctgactgtccctaatgtaataatgtgaccactgcttttccagATCTCAGTGTTAAGGAGAAGTTAGTTGAAGATATGCGGTTGACACTAGTAGAACAGGAGCAAACTCAGTCCGAGCAGGACCGTGTGCTTGAGGCCAAATCAGAGGAGGCAGACTGGCTAGCCACTGgtaagtataggaaaatggtactgtgtagatgcaattgaaccgatcattct Alignment from Exonerate_protein2genome ATCTCAGTGTTAAGGAGAAGCTGGTTGAAGACATGCGACTGACGCTAGTGGAGCAGGAGCAGACTCAGGCAGAGCAGGACCGGGTGCTCGAGGCCAAGTCAGAGGAAGCAGACTGGCTAGCCACAG aaatgactctgactgtccctaatgtaataatgtgaccactgcttttccagATCTCAGTGTTAAGGAGAAGTTAGTTGAAGATATGCGGTTGACACTAGTAGAACAGGAGCAAACTCAGTCCGAGCAGGACCGTGTGCTTGAGGCCAAATCAGAGGAGGCAGACTGGCTAGCCACTGgtaagtataggaaaatggtactgtgtagatgcaattgaaccgatcattct Alignment from Exonerate_coding2genome ATCTCAGTGTTAAGGAGAAGCTGGTTGAAGACATGCGACTGACGCTAGTGGAGCAGGAGCAGACTCAGGCAGAGCAGGACCGGGTGCTCGAGGCCAAGTCAGAGGAAGCAGACTGGCTAGCCACAG aaatgactctgactgtccctaatgtaataatgtgaccactgcttttccagATCTCAGTGTTAAGGAGAAGTTAGTTGAAGATATGCGGTTGACACTAGTAGAACAGGAGCAAACTCAGTCCGAGCAGGACCGTGTGCTTGAGGCCAAATCAGAGGAGGCAGACTGGCTAGCCACTGgtaagtataggaaaatggtactgtgtagatgcaattgaaccgatcattct Alignment from GeneWise ATCTCAGTGTTAAGGAGAAGCTGGTTGAAGACATGCGACTGACGCTAGTGGAGCAGGAGCAGACTCAGGCAGAGCAGGACCGGGTGCTCGAGGCCAAGTCAGAGGAAGCAGACTGGCTAGCCACAG aaatgactctgactgtccctaatgtaataatgtgaccactgcttttccagATCTCAGTGTTAAGGAGAAGTTAGTTGAAGATATGCGGTTGACACTAGTAGAACAGGAGCAAACTCAGTCCGAGCAGGACCGTGTGCTTGAGGCCAAATCAGAGGAGGCAGACTGGCTAGCCACTGgtaagtataggaaaatggtactgtgtagatgcaattgaaccgatcattct #### Kif20b_ID7020_25 --> 0 - 0 Original Alignment GAAACACTGACAGCACAGCTGGCAGAGAAAAATAGTGAGCTTCAGAAGTGGAGAGAAGAGCGTGACCAGCTGGTCACAGCTGTAGAGACACAGATGAAGGCTCTGCTCTCCAGCTGCAAGCACAAGGATGAAGAAATCCAGGAACTAAGAAAGGCTGCAGCAAAGAGCACCGGGACA tatatgtataattatataatagttcatatcaataccaacttttcttttagGAGACGCTAACGACGCAATTGGAAGAGAAAAACAGTGAGTTACAAAAGTGGAGGGAAGAGCATGATCAACCAGTCACAGCTGTAGCTACACAGATGAAGGTTCTCCTCTCTAGCTGCAAGCACAAAGACGAAAAAATTAAGGAACTGAGAAAGGCCGCAGCAAAAACCACTGGGACTgtaagtagcctctgatccactacctttcaagagcaatcccctgaaatgaa Alignment from CESAR GAAACACTGACAGCACAGCTGGCAGAGAAAAATAGTGAGCTTCAGAAGTGGAGAGAAGAGCGTGACCAGCTGGTCACAGCTGTAGAGACACAGATGAAGGCTCTGCTCTCCAGCTGCAAGCACAAGGATGAAGAAATCCAGGAACTAAGAAAGGCTGCAGCAAAGAGCACCGGGACA tatatgtataattatataatagttcatatcaataccaacttttcttttagGAGACGCTAACGACGCAATTGGAAGAGAAAAACAGTGAGTTACAAAAGTGGAGGGAAGAGCATGATCAACCAGTCACAGCTGTAGCTACACAGATGAAGGTTCTCCTCTCTAGCTGCAAGCACAAAGACGAAAAAATTAAGGAACTGAGAAAGGCCGCAGCAAAAACCACTGGGACTgtaagtagcctctgatccactacctttcaagagcaatcccctgaaatgaa Alignment from Spaln_aa2Genome GGAAACACTGACAGCACAGCTGGCAGAGAAAAATAGTGAGCTTCAGAAGTGGAGAGAAGAGCGTGACCAGCTGGTCACAGCTGTAGAGACACAGATGAAGGCTCTGCTCTCCAGCTGCAAGCACAAGGATGAAGAAATCCAGGAACTAAGAAAGGCTGCAGCAAAGAGCACCGGGAC tatatgtataattatataatagttcatatcaataccaacttttcttttagGAGACGCTAACGACGCAATTGGAAGAGAAAAACAGTGAGTTACAAAAGTGGAGGGAAGAGCATGATCAACCAGTCACAGCTGTAGCTACACAGATGAAGGTTCTCCTCTCTAGCTGCAAGCACAAAGACGAAAAAATTAAGGAACTGAGAAAGGCCGCAGCAAAAACCACTGGGACTgtaagtagcctctgatccactacctttcaagagcaatcccctgaaatgaa Alignment from Spaln_nt2Genome GAAACACTGACAGCACAGCTGGCAGAGAAAAATAGTGAGCTTCAGAAGTGGAGAGAAGAGCGTGACCAGCTGGTCACAGCTGTAGAGACACAGATGAAGGCTCTGCTCTCCAGCTGCAAGCACAAGGATGAAGAAATCCAGGAACTAAGAAAGGCTGCAGCAAAGAGCACCGGGACA tatatgtataattatataatagttcatatcaataccaacttttcttttagGAGACGCTAACGACGCAATTGGAAGAGAAAAACAGTGAGTTACAAAAGTGGAGGGAAGAGCATGATCAACCAGTCACAGCTGTAGCTACACAGATGAAGGTTCTCCTCTCTAGCTGCAAGCACAAAGACGAAAAAATTAAGGAACTGAGAAAGGCCGCAGCAAAAACCACTGGGACTgtaagtagcctctgatccactacctttcaagagcaatcccctgaaatgaa Alignment from Pairagon GAAACACTGACAGCACAGCTGGCAGAGAAAAATAGTGAGCTTCAGAAGTGGAGAGAAGAGCGTGACCAGCTGGTCACAGCTGTAGAGACACAGATGAAGGCTCTGCTCTCCAGCTGCAAGCACAAGGATGAAGAAATCCAGGAACTAAGAAAGGCTGCAGCAAAGAGCACCGGGACA tatatgtataattatataatagttcatatcaataccaacttttcttttagGAGACGCTAACGACGCAATTGGAAGAGAAAAACAGTGAGTTACAAAAGTGGAGGGAAGAGCATGATCAACCAGTCACAGCTGTAGCTACACAGATGAAGGTTCTCCTCTCTAGCTGCAAGCACAAAGACGAAAAAATTAAGGAACTGAGAAAGGCCGCAGCAAAAACCACTGGGACTgtaagtagcctctgatccactacctttcaagagcaatcccctgaaatgaa Alignment from Exonerate_protein2genome GAAACACTGACAGCACAGCTGGCAGAGAAAAATAGTGAGCTTCAGAAGTGGAGAGAAGAGCGTGACCAGCTGGTCACAGCTGTAGAGACACAGATGAAGGCTCTGCTCTCCAGCTGCAAGCACAAGGATGAAGAAATCCAGGAACTAAGAAAGGCTGCAGCAAAGAGCACCGGGACA tatatgtataattatataatagttcatatcaataccaacttttcttttagGAGACGCTAACGACGCAATTGGAAGAGAAAAACAGTGAGTTACAAAAGTGGAGGGAAGAGCATGATCAACCAGTCACAGCTGTAGCTACACAGATGAAGGTTCTCCTCTCTAGCTGCAAGCACAAAGACGAAAAAATTAAGGAACTGAGAAAGGCCGCAGCAAAAACCACTGGGACTgtaagtagcctctgatccactacctttcaagagcaatcccctgaaatgaa Alignment from Exonerate_coding2genome GAAACACTGACAGCACAGCTGGCAGAGAAAAATAGTGAGCTTCAGAAGTGGAGAGAAGAGCGTGACCAGCTGGTCACAGCTGTAGAGACACAGATGAAGGCTCTGCTCTCCAGCTGCAAGCACAAGGATGAAGAAATCCAGGAACTAAGAAAGGCTGCAGCAAAGAGCACCGGGACA tatatgtataattatataatagttcatatcaataccaacttttcttttagGAGACGCTAACGACGCAATTGGAAGAGAAAAACAGTGAGTTACAAAAGTGGAGGGAAGAGCATGATCAACCAGTCACAGCTGTAGCTACACAGATGAAGGTTCTCCTCTCTAGCTGCAAGCACAAAGACGAAAAAATTAAGGAACTGAGAAAGGCCGCAGCAAAAACCACTGGGACTgtaagtagcctctgatccactacctttcaagagcaatcccctgaaatgaa Alignment from GeneWise GAAACACTGACAGCACAGCTGGCAGAGAAAAATAGTGAGCTTCAGAAGTGGAGAGAAGAGCGTGACCAGCTGGTCACAGCTGTAGAGACACAGATGAAGGCTCTGCTCTCCAGCTGCAAGCACAAGGATGAAGAAATCCAGGAACTAAGAAAGGCTGCAGCAAAGAGCACCGGGACA tatatgtataattatataatagttcatatcaataccaacttttcttttagGAGACGCTAACGACGCAATTGGAAGAGAAAAACAGTGAGTTACAAAAGTGGAGGGAAGAGCATGATCAACCAGTCACAGCTGTAGCTACACAGATGAAGGTTCTCCTCTCTAGCTGCAAGCACAAAGACGAAAAAATTAAGGAACTGAGAAAGGCCGCAGCAAAAACCACTGGGACTgtaagtagcctctgatccactacctttcaagagcaatcccctgaaatgaa #### Klc2_ID854_12 --> 0 - 0 Original Alignment GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacaatcttgtgtatacttttgcaggtctcattctagctgtcttttagGGCCTAGACCCTGCTAGTCAGACAAAGGTCGTCGAACTGTTAAAGGATGGCAGCAGTGGACACAGCCATTGCCGCGGTAGTAGAGATGTGATTGGGCCT---CCTGAACTAGACTTGGAAGAGTCAGAGCCCACGGCTCACTGGAGTGGAgtatgtgcgtaaccagaggtgatagatgaatctatcttgagccaattctt Alignment from CESAR GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacaatcttgtgtatacttttgcaggtctcattctagctgtcttttagGGCCTAGACCCTGCTAGTCAGACAAAGGTCGTCGAACTGTTAAAGGATGGCAGCAGTGGACACAGCCATTGCCGCGGTAGTAGAGATGTGATTGGGCCT---CCTGAACTAGACTTGGAAGAGTCAGAGCCCACGGCTCACTGGAGTGGAgtatgtgcgtaaccagaggtgatagatgaatctatcttgagccaagtctc Alignment from Spaln_aa2Genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacaatcttgtgtatacttttgcaggtctcattctagctgtcttttagGGCCTAGACCCTGCTAGTCAGACAAAGGTCGTCGAACTGTTAAAGGATGGCAGCAGTGGACACAGCCATTGCCGCGGTAGTAGAGATGTGATTGGGCCT---CCTGAACTAGACTTGGAAGAGTCAGAGCCCACGGCTCACTGGAGTGGAgtatgtgcgtaaccagaggtgatagatgaatctatcttgagccaattctt Alignment from Spaln_nt2Genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacaatcttgtgtatacttttgcaggtctcattctagctgtcttttagGGCCTAGACCCTGCTAGTCAGACAAAGGTCGTCGAACTGTTAAAGGATGGCAGCAGTGGACACAGCCATTGCCGCGGTAGTAGAGATGTGATTGGGCCTC---CTGAACTAGACTTGGAAGAGTCAGAGCCCACGGCTCACTGGAGTGGAgtatgtgcgtaaccagaggtgatagatgaatctatcttgagccaattctt Alignment from Pairagon GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacaatcttgtgtatacttttgcaggtctcattctagctgtcttttagGGCCTAGACCCTGCTAGTCAGACAAAGGTCGTCGAACTGTTAAAGGATGGCAGCAGTGGACACAGCCATTGCCGCGGTAGTAGAGATGTGATTGGGCCTC---CTGAACTAGACTTGGAAGAGTCAGAGCCCACGGCTCACTGGAGTGGAgtatgtgcgtaaccagaggtgatagatgaatctatcttgagccaattctt Alignment from Exonerate_protein2genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacaatcttgtgtatacttttgcaggtctcattctagctgtcttttagGGCCTAGACCCTGCTAGTCAGACAAAGGTCGTCGAACTGTTAAAGGATGGCAGCAGTGGACACAGCCATTGCCGCGGTAGTAGAGATGTGATTGGGCCT---CCTGAACTAGACTTGGAAGAGTCAGAGCCCACGGCTCACTGGAGTGGAgtatgtgcgtaaccagaggtgatagatgaatctatcttgagccaattctt Alignment from Exonerate_coding2genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacaatcttgtgtatacttttgcaggtctcattctagctgtcttttagGGCCTAGACCCTGCTAGTCAGACAAAGGTCGTCGAACTGTTAAAGGATGGCAGCAGTGGACACAGCCATTGCCGCGGTAGTAGAGATGTGATTGGGCCT---CCTGAACTAGACTTGGAAGAGTCAGAGCCCACGGCTCACTGGAGTGGAgtatgtgcgtaaccagaggtgatagatgaatctatcttgagccaattctt Alignment from GeneWise GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacaatcttgtgtatacttttgcaggtctcattctagctgtcttttagGGCCTAGACCCTGCTAGTCAGACAAAGGTCGTCGAACTGTTAAAGGATGGCAGCAGTGGACACAGCCATTGCCGCGGTAGTAGAGATGTGATTGGGCCTCCT---GAACTAGACTTGGAAGAGTCAGAGCCCACGGCTCACTGGAGTGGAgtatgtgcgtaaccagaggtgatagatgaatctatcttgagccaattctt #### Klc2_ID856_10 --> 0 - 2 Original Alignment GATAAGCGCCGGGACAGCGCCCCCTATGGGGAGTATGGCAGCTGGTACAAAGCCTGTAAAGTTGACag aattgctcccatcttgctactcccccctaacattgcgcttgcttggccagGATAAGCGTCACGACAGTGCACCCTATGGAGAATATGGCAGTTGGTACCAAGCTTGCAAAGTTGACaggtaagtcaagaactactgaattggctgaaacttccggagcacgtgggcat Alignment from CESAR GATAAGCGCCGGGACAGCGCCCCCTATGGGGAGTATGGCAGCTGGTACAAAGCCTGTAAAGTTGACag aattgctcccatcttgctactcccccctaacattgcgcttgcttggccagGATAAGCGTCACGACAGTGCACCCTATGGAGAATATGGCAGTTGGTACCAAGCTTGCAAAGTTGACaggtaagtcaagaactactgaattggctgaaacttccggagcacgtgggcat Alignment from Spaln_aa2Genome GATAAGCGCCGGGACAGCGCCCCCTATGGGGAGTATGGCAGCTGGTACAAAGCCTGTAAAGTTGACAG aattgctcccatcttgctactcccccctaacattgcgcttgcttggccagGATAAGCGTCACGACAGTGCACCCTATGGAGAATATGGCAGTTGGTACCAAGCTTGCAAAGTTGACAGgtaagtcaagaactactgaattggctgaaacttccggagcacgtgggcat Alignment from Spaln_nt2Genome GATAAGCGCCGGGACAGCGCCCCCTATGGGGAGTATGGCAGCTGGTACAAAGCCTGTAAAGTTGACAG aattgctcccatcttgctactcccccctaacattgcgcttgcttggccagGATAAGCGTCACGACAGTGCACCCTATGGAGAATATGGCAGTTGGTACCAAGCTTGCAAAGTTGACAGgtaagtcaagaactactgaattggctgaaacttccggagcacgtgggcat Alignment from Pairagon GATAAGCGCCGGGACAGCGCCCCCTATGGGGAGTATGGCAGCTGGTACAAAGCCTGTAAAGTTGACAG aattgctcccatcttgctactcccccctaacattgcgcttgcttggccagGATAAGCGTCACGACAGTGCACCCTATGGAGAATATGGCAGTTGGTACCAAGCTTGCAAAGTTGACAGgtaagtcaagaactactgaattggctgaaacttccggagcacgtgggcat Alignment from Exonerate_protein2genome GATAAGCGCCGGGACAGCGCCCCCTATGGGGAGTATGGCAGCTGGTACAAAGCCTGTAAAGTTGACAG aattgctcccatcttgctactcccccctaacattgcgcttgcttggccagGATAAGCGTCACGACAGTGCACCCTATGGAGAATATGGCAGTTGGTACCAAGCTTGCAAAGTTGACAGgtaagtcaagaactactgaattggctgaaacttccggagcacgtgggcat Alignment from Exonerate_coding2genome GATAAGCGCCGGGACAGCGCCCCCTATGGGGAGTATGGCAGCTGGTACAAAGCCTGTAAAGTTGACAG aattgctcccatcttgctactcccccctaacattgcgcttgcttggccagGATAAGCGTCACGACAGTGCACCCTATGGAGAATATGGCAGTTGGTACCAAGCTTGCAAAGTTGACAGgtaagtcaagaactactgaattggctgaaacttccggagcacgtgggcat Alignment from GeneWise GATAAGCGCCGGGACAGCGCCCCCTATGGGGAGTATGGCAGCTGGTACAAAGCCTGTAAAGTTGACAG aattgctcccatcttgctactcccccctaacattgcgcttgcttggccagGATAAGCGTCACGACAGTGCACCCTATGGAGAATATGGCAGTTGGTACCAAGCTTGCAAAGTTGACAGgtaagtcaagaactactgaattggctgaaacttccggagcacgtgggcat #### Klc2_ID863_3 --> 0 - 1 Original Alignment GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAg ccccccccgtgtgctatctgcatgtgcctaacactgcatctctttgacagAAGGAGAAG------GTCCCCAAAGACTCCCTTGATGACCTGTTTCCCAATGAAGATGAACAGAGATCAggtaactagggtgaattaattatggcgagtacaggtagttaggagtttgca Alignment from CESAR GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAg ccccccccgtgtgctatctgcatgtgcctaacactgcatctctttgacagAAGGAGAAG------GTCCCCAAAGACTCCCTTGATGACCTGTTTCCCAATGAAGATGAACAGAGATCAggtaactagggtgaattaattatggcgagtacaggtagttaggagtttgca Alignment from Spaln_aa2Genome GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG ccccccccgtgtgctatctgcatgtgcctaacactgcatctctttgacagAAGGAGAAG------GTCCCCAAAGACTCCCTTGATGACCTGTTTCCCAATGAAGATGAACAGAGATCAGgtaactagggtgaattaattatggcgagtacaggtagttaggagtttgca Alignment from Spaln_nt2Genome GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG ccccccccgtgtgctatctgcatgtgcctaacactgcatctctttgacagAAGGAGAAG------GTCCCCAAAGACTCCCTTGATGACCTGTTTCCCAATGAAGATGAACAGAGATCAGgtaactagggtgaattaattatggcgagtacaggtagttaggagtttgca Alignment from Pairagon GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG ccccccccgtgtgctatctgcatgtgcctaacactgcatctctttgacagAAGGAGAAG------GTCCCCAAAGACTCCCTTGATGACCTGTTTCCCAATGAAGATGAACAGAGATCAGgtaactagggtgaattaattatggcgagtacaggtagttaggagtttgca Alignment from Exonerate_protein2genome GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG ccccccccgtgtgctatctgcatgtgcctaacactgcatctctttgacagAAGGAGAAG------GTCCCCAAAGACTCCCTTGATGACCTGTTTCCCAATGAAGATGAACAGAGATCAGgtaactagggtgaattaattatggcgagtacaggtagttaggagtttgca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG ccccccccgtgtgctatctgcatgtgcctaacactgcatctctttgacagAAGGAGAAG------GTCCCCAAAGACTCCCTTGATGACCTGTTTCCCAATGAAGATGAACAGAGATCAGgtaactagggtgaattaattatggcgagtacaggtagttaggagtttgca #### Ldb1_ID9695_5 --> 0 - 1 Original Alignment GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATa aggatgagaggttgacaggggtgtgcctctcacctttctccaccctgcagGAATGTGATAATCTCTGGTGGGATGCTTTCACGACTGAGTTCTTCGAAGATGATACCATGCTCACTATAACCTTTTGTTTGAAGGATGGGCCAAACAGGTACagtgccctagctcttggtgagatgctttcacttagctctttttcctttcac Alignment from CESAR GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATa aggatgagaggttgacaggggtgtgcctctcacctttctccaccctgcagGAATGTGATAATCTCTGGTGGGATGCTTTCACGACTGAGTTCTTCGAAGATGATACCATGCTCACTATAACCTTTTGTTTGAAGGATGGGCCAAACAGGTACagtgccctagctcttggtgagatgctttcacttagctctttttcctttcac Alignment from Spaln_aa2Genome GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA aggatgagaggttgacaggggtgtgcctctcacctttctccaccctgcagGAATGTGATAATCTCTGGTGGGATGCTTTCACGACTGAGTTCTTCGAAGATGATACCATGCTCACTATAACCTTTTGTTTGAAGGATGGGCCAAACAGGTACAgtgccctagctcttggtgagatgctttcacttagctctttttcctttcac Alignment from Spaln_nt2Genome GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA aggatgagaggttgacaggggtgtgcctctcacctttctccaccctgcagGAATGTGATAATCTCTGGTGGGATGCTTTCACGACTGAGTTCTTCGAAGATGATACCATGCTCACTATAACCTTTTGTTTGAAGGATGGGCCAAACAGGTACAgtgccctagctcttggtgagatgctttcacttagctctttttcctttcac Alignment from Pairagon GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA aggatgagaggttgacaggggtgtgcctctcacctttctccaccctgcagGAATGTGATAATCTCTGGTGGGATGCTTTCACGACTGAGTTCTTCGAAGATGATACCATGCTCACTATAACCTTTTGTTTGAAGGATGGGCCAAACAGGTACAgtgccctagctcttggtgagatgctttcacttagctctttttcctttcac Alignment from Exonerate_protein2genome GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA aggatgagaggttgacaggggtgtgcctctcacctttctccaccctgcagGAATGTGATAATCTCTGGTGGGATGCTTTCACGACTGAGTTCTTCGAAGATGATACCATGCTCACTATAACCTTTTGTTTGAAGGATGGGCCAAACAGGTACAgtgccctagctcttggtgagatgctttcacttagctctttttcctttcac Alignment from Exonerate_coding2genome GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA aggatgagaggttgacaggggtgtgcctctcacctttctccaccctgcagGAATGTGATAATCTCTGGTGGGATGCTTTCACGACTGAGTTCTTCGAAGATGATACCATGCTCACTATAACCTTTTGTTTGAAGGATGGGCCAAACAGGTACAgtgccctagctcttggtgagatgctttcacttagctctttttcctttcac Alignment from GeneWise --------------------------------------------------GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA AGGATGAGAGGTTGACAGGGGTGTGCCTCTCACCTTTCTCCACCCTGCAGGAATGTGATAATCTCTGGTGGGATGCTTTCACGACTGAGTTCTTCGAAGATGATACCATGCTCACTATAACCTTTTGTTTGAAGGATGGGCCAAACAGGTACAgtgccctagctcttggtgagatgctttcacttagctctttttcctttcac #### Ldb1_ID9698_2 --> 2 - 2 Original Alignment gtTGTTCCTCAAAGTCATTCAAGCTGTACTCGCCGAAGGAGCCCCCGAACGGCAACGCCTTCCCTCCCTTCCACCCCGGCACCATGCTGGATCGGGATGTGgg ggaagcctggccattttgctacccatcatgtgtgtgtatttctttttaaggtTGCTCCTCGAAGTCATTTGAGCTGTATTCCCCAAAAGAGTCGGCAAATGGCAACGCCTTTCCTCCTGTTCATCCAGGAACCATGCTGGATAGAGATGTAgggtaaggccttatttcagccttatttctttgcccacctggggtcacagtac Alignment from CESAR gtTGTTCCTCAAAGTCATTCAAGCTGTACTCGCCGAAGGAGCCCCCGAACGGCAACGCCTTCCCTCCCTTCCACCCCGGCACCATGCTGGATCGGGATGTGgg ggaagcctggccattttgctacccatcatgtgtgtgtatttctttttaaggtTGCTCCTCGAAGTCATTTGAGCTGTATTCCCCAAAAGAGTCGGCAAATGGCAACGCCTTTCCTCCTGTTCATCCAGGAACCATGCTGGATAGAGATGTAgggtaaggccttatttcagccttatttctttgcccacctggggtcacagtac Alignment from Spaln_aa2Genome GTTGTTCCTCAAAGTCATTCAAGCTGTACTCGCCGAAGGAGCCCCCGAACGGCAACGCCTTCCCTCCCTTCCACCCCGGCACCATGCTGGATCGGGATGTGGG ggaagcctggccattttgctacccatcatgtgtgtgtatttctttttaagGTTGCTCCTCGAAGTCATTTGAGCTGTATTCCCCAAAAGAGTCGGCAAATGGCAACGCCTTTCCTCCTGTTCATCCAGGAACCATGCTGGATAGAGATGTAGGgtaaggccttatttcagccttatttctttgcccacctggggtcacagtac Alignment from Spaln_nt2Genome GTTGTTCCTCAAAGTCATTCAAGCTGTACTCGCCGAAGGAGCCCCCGAACGGCAACGCCTTCCCTCCCTTCCACCCCGGCACCATGCTGGATCGGGATGTGGG ggaagcctggccattttgctacccatcatgtgtgtgtatttctttttaagGTTGCTCCTCGAAGTCATTTGAGCTGTATTCCCCAAAAGAGTCGGCAAATGGCAACGCCTTTCCTCCTGTTCATCCAGGAACCATGCTGGATAGAGATGTAGGgtaaggccttatttcagccttatttctttgcccacctggggtcacagtac Alignment from Pairagon GTTGTTCCTCAAAGTCATTCAAGCTGTACTCGCCGAAGGAGCCCCCGAACGGCAACGCCTTCCCTCCCTTCCACCCCGGCACCATGCTGGATCGGGATGTGGG ggaagcctggccattttgctacccatcatgtgtgtgtatttctttttaagGTTGCTCCTCGAAGTCATTTGAGCTGTATTCCCCAAAAGAGTCGGCAAATGGCAACGCCTTTCCTCCTGTTCATCCAGGAACCATGCTGGATAGAGATGTAGGgtaaggccttatttcagccttatttctttgcccacctggggtcacagtac Alignment from Exonerate_protein2genome GTTGTTCCTCAAAGTCATTCAAGCTGTACTCGCCGAAGGAGCCCCCGAACGGCAACGCCTTCCCTCCCTTCCACCCCGGCACCATGCTGGATCGGGATGTGGG ggaagcctggccattttgctacccatcatgtgtgtgtatttctttttaagGTTGCTCCTCGAAGTCATTTGAGCTGTATTCCCCAAAAGAGTCGGCAAATGGCAACGCCTTTCCTCCTGTTCATCCAGGAACCATGCTGGATAGAGATGTAGGgtaaggccttatttcagccttatttctttgcccacctggggtcacagtac Alignment from Exonerate_coding2genome GGTTGTTCCTCAAAGTCATTCAAGCTGTACTCGCCGAAGGAGCCCCCGAACGGCAACGCCTTCCCTCCCTTCCACCCCGGCACCATGCTGGATCGGGATGTGGG ggaagcctggccattttgctacccatcatgtgtgtgtatttctttttaaGGTTGCTCCTCGAAGTCATTTGAGCTGTATTCCCCAAAAGAGTCGGCAAATGGCAACGCCTTTCCTCCTGTTCATCCAGGAACCATGCTGGATAGAGATGTAGGgtaaggccttatttcagccttatttctttgcccacctggggtcacagtac Alignment from GeneWise TCAGTGGGCTGTGCCTGTCCTGGTTGTTCCTCAAAGTCATTCAAGCTGTACTCGCCGAAGGAGCCCCCGAACGGCAACGCCTTCCCTCCCTTCCACCCCGGCACCATGCTGGATCGGGATGTGGG cccatcatgtgtgtgtatttctttttaa---------------------GGTTGCTCCTCGAAGTCATTTGAGCTGTATTCCCCAAAAGAGTCGGCAAATGGCAACGCCTTTCCTCCTGTTCATCCAGGAACCATGCTGGATAGAGATGTAGGgtaaggccttatttcagccttatttctttgcccacctggggtcacagtac #### Lgi1_ID7577_2 --> 1 - 2 Original Alignment aTCCTTTGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTCTTATTCACACCATCGCTGCAGCTCtt aaggtaccagaagtaggaacttcttaccacagtctcctttccatccccagaTCTTTCGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTTCTATTCACACCATCGTTACAGCTCctgtaagtcagattcatgtcaagctcattgtccataaggagggacattgtga Alignment from CESAR aTCCTTTGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTCTTATTCACACCATCGCTGCAGCTCtt aaggtaccagaagtaggaacttcttaccacagtctcctttccatccccagaTCTTTCGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTTCTATTCACACCATCGTTACAGCTCctgtaagtcagattcatgtcaagctcattgtccataaggagggacattgtga Alignment from Spaln_aa2Genome ATCCTTTGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTCTTATTCACACCATCGCTGCAGCTCTT aaggtaccagaagtaggaacttcttaccacagtctcctttccatccccagATCTTTCGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTTCTATTCACACCATCGTTACAGCTCCTgtaagtcagattcatgtcaagctcattgtccataaggagggacattgtga Alignment from Spaln_nt2Genome ATCCTTTGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTCTTATTCACACCATCGCTGCAGCTCTT aaggtaccagaagtaggaacttcttaccacagtctcctttccatccccagATCTTTCGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTTCTATTCACACCATCGTTACAGCTCCTgtaagtcagattcatgtcaagctcattgtccataaggagggacattgtga Alignment from Pairagon ATCCTTTGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTCTTATTCACACCATCGCTGCAGCTCTT aaggtaccagaagtaggaacttcttaccacagtctcctttccatccccagATCTTTCGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTTCTATTCACACCATCGTTACAGCTCCTgtaagtcagattcatgtcaagctcattgtccataaggagggacattgtga Alignment from Exonerate_protein2genome ATCCTTTGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTCTTATTCACACCATCGCTGCAGCTCTT aaggtaccagaagtaggaacttcttaccacagtctcctttccatccccagATCTTTCGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTTCTATTCACACCATCGTTACAGCTCCTgtaagtcagattcatgtcaagctcattgtccataaggagggacattgtga Alignment from Exonerate_coding2genome ATCCTTTGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTCTTATTCACACCATCGCTGCAGCTCTT aaggtaccagaagtaggaacttcttaccacagtctcctttccatccccagATCTTTCGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTTCTATTCACACCATCGTTACAGCTCCTgtaagtcagattcatgtcaagctcattgtccataaggagggacattgtga Alignment from GeneWise ATCCTTTGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTCTTATTCACACCATCGCTGCAGCTCTT aaggtaccagaagtaggaacttcttaccacagtctcctttccatccccagATCTTTCGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTTCTATTCACACCATCGTTACAGCTCCTgtaagtcagattcatgtcaagctcattgtccataaggagggacattgtga #### Lgi1_ID7578_3 --> 1 - 2 Original Alignment gTTATTTACGTCGAACTCCTTTGATGTGATCAGTGATGATGCTTTTATTGGTCTTCCACATCTAGAATATtt ttccctcctttgatctcctccctatacgtatttctctgcttattcgctaggTTATTCACATCAAACTCTTTCGATGTGATCAGTGAAGATGCTTTTATTGGTCTTCCACATCTAGAGTATctgtaggcaaaaatatccatgagtatataaaaggctctagttaaccagtgtg Alignment from CESAR gTTATTTACGTCGAACTCCTTTGATGTGATCAGTGATGATGCTTTTATTGGTCTTCCACATCTAGAATATtt ttccctcctttgatctcctccctatacgtatttctctgcttattcgctaggTTATTCACATCAAACTCTTTCGATGTGATCAGTGAAGATGCTTTTATTGGTCTTCCACATCTAGAGTATctgtaggcaaaaatatccatgagtatataaaaggctctagttaaccagtgtg Alignment from Spaln_aa2Genome GTTATTTACGTCGAACTCCTTTGATGTGATCAGTGATGATGCTTTTATTGGTCTTCCACATCTAGAATATTT ttccctcctttgatctcctccctatacgtatttctctgcttattcgctagGTTATTCACATCAAACTCTTTCGATGTGATCAGTGAAGATGCTTTTATTGGTCTTCCACATCTAGAGTATCTgtaggcaaaaatatccatgagtatataaaaggctctagttaaccagtgtg Alignment from Spaln_nt2Genome GTTATTTACGTCGAACTCCTTTGATGTGATCAGTGATGATGCTTTTATTGGTCTTCCACATCTAGAATATTT ttccctcctttgatctcctccctatacgtatttctctgcttattcgctagGTTATTCACATCAAACTCTTTCGATGTGATCAGTGAAGATGCTTTTATTGGTCTTCCACATCTAGAGTATCTgtaggcaaaaatatccatgagtatataaaaggctctagttaaccagtgtg Alignment from Pairagon GTTATTTACGTCGAACTCCTTTGATGTGATCAGTGATGATGCTTTTATTGGTCTTCCACATCTAGAATATTT ttccctcctttgatctcctccctatacgtatttctctgcttattcgctagGTTATTCACATCAAACTCTTTCGATGTGATCAGTGAAGATGCTTTTATTGGTCTTCCACATCTAGAGTATCTgtaggcaaaaatatccatgagtatataaaaggctctagttaaccagtgtg Alignment from Exonerate_protein2genome GTTATTTACGTCGAACTCCTTTGATGTGATCAGTGATGATGCTTTTATTGGTCTTCCACATCTAGAATATTT ttccctcctttgatctcctccctatacgtatttctctgcttattcgctagGTTATTCACATCAAACTCTTTCGATGTGATCAGTGAAGATGCTTTTATTGGTCTTCCACATCTAGAGTATCTgtaggcaaaaatatccatgagtatataaaaggctctagttaaccagtgtg Alignment from Exonerate_coding2genome GTTATTTACGTCGAACTCCTTTGATGTGATCAGTGATGATGCTTTTATTGGTCTTCCACATCTAGAATATTT ttccctcctttgatctcctccctatacgtatttctctgcttattcgctagGTTATTCACATCAAACTCTTTCGATGTGATCAGTGAAGATGCTTTTATTGGTCTTCCACATCTAGAGTATCTgtaggcaaaaatatccatgagtatataaaaggctctagttaaccagtgtg Alignment from GeneWise GTTATTTACGTCGAACTCCTTTGATGTGATCAGTGATGATGCTTTTATTGGTCTTCCACATCTAGAATATTT ttccctcctttgatctcctccctatacgtatttctctgcttattcgctagGTTATTCACATCAAACTCTTTCGATGTGATCAGTGAAGATGCTTTTATTGGTCTTCCACATCTAGAGTATCTgtaggcaaaaatatccatgagtatataaaaggctctagttaaccagtgtg #### Lipa_ID6936_7 --> 0 - 0 Original Alignment TCTAGAGTGGATGTGTATACAACACACTGCCCTGCGGGAACTTCTGTGCAAAACATGTTACACTGGGGTCAG tgttgggttaggacaatttgcctggtgctttatcttttgttgtctttcagTCAAGAGTGGATGTGTATACAATTCACTGCCCCTCAGGAACTTCGGTGCAAAACATGCTGCAATGGGGCCAAgtgagcagattcatctagctcaaatgatatccttgtcagtaaatgggttc Alignment from CESAR TCTAGAGTGGATGTGTATACAACACACTGCCCTGCGGGAACTTCTGTGCAAAACATGTTACACTGGGGTCAG tgttgggttaggacaatttgcctggtgctttatcttttgttgtctttcagTCAAGAGTGGATGTGTATACAATTCACTGCCCCTCAGGAACTTCGGTGCAAAACATGCTGCAATGGGGCCAAgtgagcagattcatctagctcaaatgatatccttgtcagtaaatgggttc Alignment from Spaln_aa2Genome TCTAGAGTGGATGTGTATACAACACACTGCCCTGCGGGAACTTCTGTGCAAAACATGTTACACTGGGGTCAG tgttgggttaggacaatttgcctggtgctttatcttttgttgtctttcagTCAAGAGTGGATGTGTATACAATTCACTGCCCCTCAGGAACTTCGGTGCAAAACATGCTGCAATGGGGCCAAgtgagcagattcatctagctcaaatgatatccttgtcagtaaatgggttc Alignment from Spaln_nt2Genome TCTAGAGTGGATGTGTATACAACACACTGCCCTGCGGGAACTTCTGTGCAAAACATGTTACACTGGGGTCAG tgttgggttaggacaatttgcctggtgctttatcttttgttgtctttcagTCAAGAGTGGATGTGTATACAATTCACTGCCCCTCAGGAACTTCGGTGCAAAACATGCTGCAATGGGGCCAAgtgagcagattcatctagctcaaatgatatccttgtcagtaaatgggttc Alignment from Pairagon TCTAGAGTGGATGTGTATACAACACACTGCCCTGCGGGAACTTCTGTGCAAAACATGTTACACTGGGGTCAG tgttgggttaggacaatttgcctggtgctttatcttttgttgtctttcagTCAAGAGTGGATGTGTATACAATTCACTGCCCCTCAGGAACTTCGGTGCAAAACATGCTGCAATGGGGCCAAgtgagcagattcatctagctcaaatgatatccttgtcagtaaatgggttc Alignment from Exonerate_protein2genome TCTAGAGTGGATGTGTATACAACACACTGCCCTGCGGGAACTTCTGTGCAAAACATGTTACACTGGGGTCAG tgttgggttaggacaatttgcctggtgctttatcttttgttgtctttcagTCAAGAGTGGATGTGTATACAATTCACTGCCCCTCAGGAACTTCGGTGCAAAACATGCTGCAATGGGGCCAAgtgagcagattcatctagctcaaatgatatccttgtcagtaaatgggttc Alignment from Exonerate_coding2genome TCTAGAGTGGATGTGTATACAACACACTGCCCTGCGGGAACTTCTGTGCAAAACATGTTACACTGGGGTCAG tgttgggttaggacaatttgcctggtgctttatcttttgttgtctttcagTCAAGAGTGGATGTGTATACAATTCACTGCCCCTCAGGAACTTCGGTGCAAAACATGCTGCAATGGGGCCAAgtgagcagattcatctagctcaaatgatatccttgtcagtaaatgggttc Alignment from GeneWise TCTAGAGTGGATGTGTATACAACACACTGCCCTGCGGGAACTTCTGTGCAAAACATGTTACACTGGGGTCAG tgttgggttaggacaatttgcctggtgctttatcttttgttgtctttcagTCAAGAGTGGATGTGTATACAATTCACTGCCCCTCAGGAACTTCGGTGCAAAACATGCTGCAATGGGGCCAAgtgagcagattcatctagctcaaatgatatccttgtcagtaaatgggttc #### Lipa_ID6937_6 --> 0 - 0 Original Alignment GACATGTTTGGACAGAAGCAATTTCTCCCTCAGAGTGCGATGCTGAAGTGGCTGAGCATTCACGTTTGCACCCACGTCATCATGAAGGAGCTTTGCGCAAACGTCTTCTTCCTGCTATGTGGCTTCAATGAGAAGAATTTAAATATG gatgttaaccagtctgtagattgccttgggtgcccctgattctgtttcagGATATGTTTGGACAGAAGCAAGTTCTACCTCAAAGTGCAATGCTGAAATGGCTAAGCATTCATGTTTGTACCCACACCCTTATGAAGGAGCTTTGTGCCAATGTTTTCTTCTTGTTATGTGGCTTCAATGAGAAAAACCTCAATATGgtaagtagggacaacctgcatgtacatcccttctatccctccctacatcc Alignment from CESAR GACATGTTTGGACAGAAGCAATTTCTCCCTCAGAGTGCGATGCTGAAGTGGCTGAGCATTCACGTTTGCACCCACGTCATCATGAAGGAGCTTTGCGCAAACGTCTTCTTCCTGCTATGTGGCTTCAATGAGAAGAATTTAAATATG gatgttaaccagtctgtagattgccttgggtgcccctgattctgtttcagGATATGTTTGGACAGAAGCAAGTTCTACCTCAAAGTGCAATGCTGAAATGGCTAAGCATTCATGTTTGTACCCACACCCTTATGAAGGAGCTTTGTGCCAATGTTTTCTTCTTGTTATGTGGCTTCAATGAGAAAAACCTCAATATGgtaagtagggacaacctgcatgtacatcccttctatccctccctacatcc Alignment from Spaln_aa2Genome GACATGTTTGGACAGAAGCAATTTCTCCCTCAGAGTGCGATGCTGAAGTGGCTGAGCATTCACGTTTGCACCCACGTCATCATGAAGGAGCTTTGCGCAAACGTCTTCTTCCTGCTATGTGGCTTCAATGAGAAGAATTTAAATATG gatgttaaccagtctgtagattgccttgggtgcccctgattctgtttcagGATATGTTTGGACAGAAGCAAGTTCTACCTCAAAGTGCAATGCTGAAATGGCTAAGCATTCATGTTTGTACCCACACCCTTATGAAGGAGCTTTGTGCCAATGTTTTCTTCTTGTTATGTGGCTTCAATGAGAAAAACCTCAATATGgtaagtagggacaacctgcatgtacatcccttctatccctccctacatcc Alignment from Spaln_nt2Genome GACATGTTTGGACAGAAGCAATTTCTCCCTCAGAGTGCGATGCTGAAGTGGCTGAGCATTCACGTTTGCACCCACGTCATCATGAAGGAGCTTTGCGCAAACGTCTTCTTCCTGCTATGTGGCTTCAATGAGAAGAATTTAAATATG gatgttaaccagtctgtagattgccttgggtgcccctgattctgtttcagGATATGTTTGGACAGAAGCAAGTTCTACCTCAAAGTGCAATGCTGAAATGGCTAAGCATTCATGTTTGTACCCACACCCTTATGAAGGAGCTTTGTGCCAATGTTTTCTTCTTGTTATGTGGCTTCAATGAGAAAAACCTCAATATGgtaagtagggacaacctgcatgtacatcccttctatccctccctacatcc Alignment from Pairagon GACATGTTTGGACAGAAGCAATTTCTCCCTCAGAGTGCGATGCTGAAGTGGCTGAGCATTCACGTTTGCACCCACGTCATCATGAAGGAGCTTTGCGCAAACGTCTTCTTCCTGCTATGTGGCTTCAATGAGAAGAATTTAAATATG gatgttaaccagtctgtagattgccttgggtgcccctgattctgtttcagGATATGTTTGGACAGAAGCAAGTTCTACCTCAAAGTGCAATGCTGAAATGGCTAAGCATTCATGTTTGTACCCACACCCTTATGAAGGAGCTTTGTGCCAATGTTTTCTTCTTGTTATGTGGCTTCAATGAGAAAAACCTCAATATGgtaagtagggacaacctgcatgtacatcccttctatccctccctacatcc Alignment from Exonerate_protein2genome GACATGTTTGGACAGAAGCAATTTCTCCCTCAGAGTGCGATGCTGAAGTGGCTGAGCATTCACGTTTGCACCCACGTCATCATGAAGGAGCTTTGCGCAAACGTCTTCTTCCTGCTATGTGGCTTCAATGAGAAGAATTTAAATATG gatgttaaccagtctgtagattgccttgggtgcccctgattctgtttcagGATATGTTTGGACAGAAGCAAGTTCTACCTCAAAGTGCAATGCTGAAATGGCTAAGCATTCATGTTTGTACCCACACCCTTATGAAGGAGCTTTGTGCCAATGTTTTCTTCTTGTTATGTGGCTTCAATGAGAAAAACCTCAATATGgtaagtagggacaacctgcatgtacatcccttctatccctccctacatcc Alignment from Exonerate_coding2genome GACATGTTTGGACAGAAGCAATTTCTCCCTCAGAGTGCGATGCTGAAGTGGCTGAGCATTCACGTTTGCACCCACGTCATCATGAAGGAGCTTTGCGCAAACGTCTTCTTCCTGCTATGTGGCTTCAATGAGAAGAATTTAAATATG gatgttaaccagtctgtagattgccttgggtgcccctgattctgtttcagGATATGTTTGGACAGAAGCAAGTTCTACCTCAAAGTGCAATGCTGAAATGGCTAAGCATTCATGTTTGTACCCACACCCTTATGAAGGAGCTTTGTGCCAATGTTTTCTTCTTGTTATGTGGCTTCAATGAGAAAAACCTCAATATGgtaagtagggacaacctgcatgtacatcccttctatccctccctacatcc Alignment from GeneWise GACATGTTTGGACAGAAGCAATTTCTCCCTCAGAGTGCGATGCTGAAGTGGCTGAGCATTCACGTTTGCACCCACGTCATCATGAAGGAGCTTTGCGCAAACGTCTTCTTCCTGCTATGTGGCTTCAATGAGAAGAATTTAAATATG gatgttaaccagtctgtagattgccttgggtgcccctgattctgtttcagGATATGTTTGGACAGAAGCAAGTTCTACCTCAAAGTGCAATGCTGAAATGGCTAAGCATTCATGTTTGTACCCACACCCTTATGAAGGAGCTTTGTGCCAATGTTTTCTTCTTGTTATGTGGCTTCAATGAGAAAAACCTCAATATGgtaagtagggacaacctgcatgtacatcccttctatccctccctacatcc #### Lipf_ID6847_3 --> 2 - 2 Original Alignment gcAAGAGACCTGTGGCATATTTGCAGCATGGTTTGATTGCATCAGCCACAAACTGGATTACAAATCTGCCAAACAACAGCCTGGCCTTCATTCTAGCAGATGCTGGCTATGATGTGTGGCTGGGGAACAGTCGAGGGAATACATGGTCCCGGAAAAATGTATACTATTCACCAGACTCAGTTGAATTCTGGGCTTTCag acccagtccaagggatcaattcccaacaccgtgtgtgtgacccactacaggtAAGAGATCTGTGGCATACCTTCAGCATGGTCTGATTGCATCAGCTACGAATTGGATCACAAATCTACCAAACAACAGCCTGGCTTTCATCCTAGCAGATGCAGGCTATGATGTATGGCTAGGGAACAGCCGACGTAATACCTGGTCTAGGAAAAATGTATACTATTCACCAGATCCAGTTGAGTTCTGGGCCTTTaggtaagcaattcagagaatggatgtattgcaacaggaaaattcaaaaacag Alignment from CESAR gcAAGAGACCTGTGGCATATTTGCAGCATGGTTTGATTGCATCAGCCACAAACTGGATTACAAATCTGCCAAACAACAGCCTGGCCTTCATTCTAGCAGATGCTGGCTATGATGTGTGGCTGGGGAACAGTCGAGGGAATACATGGTCCCGGAAAAATGTATACTATTCACCAGACTCAGTTGAATTCTGGGCTTTCag acccagtccaagggatcaattcccaacaccgtgtgtgtgacccactacaggtAAGAGATCTGTGGCATACCTTCAGCATGGTCTGATTGCATCAGCTACGAATTGGATCACAAATCTACCAAACAACAGCCTGGCTTTCATCCTAGCAGATGCAGGCTATGATGTATGGCTAGGGAACAGCCGACGTAATACCTGGTCTAGGAAAAATGTATACTATTCACCAGATCCAGTTGAGTTCTGGGCCTTTaggtaagcaattcagagaatggatgtattgcaacaggaaaattcaaaaacag Alignment from Spaln_aa2Genome GCAAGAGACCTGTGGCATATTTGCAGCATGGTTTGATTGCATCAGCCACAAACTGGATTACAAATCTGCCAAACAACAGCCTGGCCTTCATTCTAGCAGATGCTGGCTATGATGTGTGGCTGGGGAACAGTCGAGGGAATACATGGTCCCGGAAAAATGTATACTATTCACCAGACTCAGTTGAATTCTGGGCTTTCAG acccagtccaagggatcaattcccaacaccgtgtgtgtgacccactacagGTAAGAGATCTGTGGCATACCTTCAGCATGGTCTGATTGCATCAGCTACGAATTGGATCACAAATCTACCAAACAACAGCCTGGCTTTCATCCTAGCAGATGCAGGCTATGATGTATGGCTAGGGAACAGCCGACGTAATACCTGGTCTAGGAAAAATGTATACTATTCACCAGATCCAGTTGAGTTCTGGGCCTTTAGgtaagcaattcagagaatggatgtattgcaacaggaaaattcaaaaacag Alignment from Spaln_nt2Genome --AAGAGACCTGTGGCATATTTGCAGCATGGTTTGATTGCATCAGCCACAAACTGGATTACAAATCTGCCAAACAACAGCCTGGCCTTCATTCTAGCAGATGCTGGCTATGATGTGTGGCTGGGGAACAGTCGAGGGAATACATGGTCCCGGAAAAATGTATACTATTCACCAGACTCAGTTGAATTCTGGGCTTTCAG acccagtccaagggatcaattcccaacaccgtgtgtgtgacccactacagGTAAGAGATCTGTGGCATACCTTCAGCATGGTCTGATTGCATCAGCTACGAATTGGATCACAAATCTACCAAACAACAGCCTGGCTTTCATCCTAGCAGATGCAGGCTATGATGTATGGCTAGGGAACAGCCGACGTAATACCTGGTCTAGGAAAAATGTATACTATTCACCAGATCCAGTTGAGTTCTGGGCCTTTAGgtaagcaattcagagaatggatgtattgcaacaggaaaattcaaaaacag Alignment from Pairagon GCAAGAGACCTGTGGCATATTTGCAGCATGGTTTGATTGCATCAGCCACAAACTGGATTACAAATCTGCCAAACAACAGCCTGGCCTTCATTCTAGCAGATGCTGGCTATGATGTGTGGCTGGGGAACAGTCGAGGGAATACATGGTCCCGGAAAAATGTATACTATTCACCAGACTCAGTTGAATTCTGGGCTTTCAG acccagtccaagggatcaattcccaacaccgtgtgtgtgacccactacagGTAAGAGATCTGTGGCATACCTTCAGCATGGTCTGATTGCATCAGCTACGAATTGGATCACAAATCTACCAAACAACAGCCTGGCTTTCATCCTAGCAGATGCAGGCTATGATGTATGGCTAGGGAACAGCCGACGTAATACCTGGTCTAGGAAAAATGTATACTATTCACCAGATCCAGTTGAGTTCTGGGCCTTTAGgtaagcaattcagagaatggatgtattgcaacaggaaaattcaaaaacag Alignment from Exonerate_protein2genome GCAAGAGACCTGTGGCATATTTGCAGCATGGTTTGATTGCATCAGCCACAAACTGGATTACAAATCTGCCAAACAACAGCCTGGCCTTCATTCTAGCAGATGCTGGCTATGATGTGTGGCTGGGGAACAGTCGAGGGAATACATGGTCCCGGAAAAATGTATACTATTCACCAGACTCAGTTGAATTCTGGGCTTTCAG acccagtccaagggatcaattcccaacaccgtgtgtgtgacccactacagGTAAGAGATCTGTGGCATACCTTCAGCATGGTCTGATTGCATCAGCTACGAATTGGATCACAAATCTACCAAACAACAGCCTGGCTTTCATCCTAGCAGATGCAGGCTATGATGTATGGCTAGGGAACAGCCGACGTAATACCTGGTCTAGGAAAAATGTATACTATTCACCAGATCCAGTTGAGTTCTGGGCCTTTAGgtaagcaattcagagaatggatgtattgcaacaggaaaattcaaaaacag Alignment from Exonerate_coding2genome GCAAGAGACCTGTGGCATATTTGCAGCATGGTTTGATTGCATCAGCCACAAACTGGATTACAAATCTGCCAAACAACAGCCTGGCCTTCATTCTAGCAGATGCTGGCTATGATGTGTGGCTGGGGAACAGTCGAGGGAATACATGGTCCCGGAAAAATGTATACTATTCACCAGACTCAGTTGAATTCTGGGCTTTCAG acccagtccaagggatcaattcccaacaccgtgtgtgtgacccactacagGTAAGAGATCTGTGGCATACCTTCAGCATGGTCTGATTGCATCAGCTACGAATTGGATCACAAATCTACCAAACAACAGCCTGGCTTTCATCCTAGCAGATGCAGGCTATGATGTATGGCTAGGGAACAGCCGACGTAATACCTGGTCTAGGAAAAATGTATACTATTCACCAGATCCAGTTGAGTTCTGGGCCTTTAGgtaagcaattcagagaatggatgtattgcaacaggaaaattcaaaaacag Alignment from GeneWise GCAAGAGACCTGTGGCATATTTGCAGCATGGTTTGATTGCATCAGCCACAAACTGGATTACAAATCTGCCAAACAACAGCCTGGCCTTCATTCTAGCAGATGCTGGCTATGATGTGTGGCTGGGGAACAGTCGAGGGAATACATGGTCCCGGAAAAATGTATACTATTCACCAGACTCAGTTGAATTCTGGGCTTTCAG acccagtccaagggatcaattcccaacaccgtgtgtgtgacccactacagGTAAGAGATCTGTGGCATACCTTCAGCATGGTCTGATTGCATCAGCTACGAATTGGATCACAAATCTACCAAACAACAGCCTGGCTTTCATCCTAGCAGATGCAGGCTATGATGTATGGCTAGGGAACAGCCGACGTAATACCTGGTCTAGGAAAAATGTATACTATTCACCAGATCCAGTTGAGTTCTGGGCCTTTAGgtaagcaattcagagaatggatgtattgcaacaggaaaattcaaaaacag #### Lipk_ID6858_2 --> 0 - 1 Original Alignment AGTGAACTTATTTCTTACTGGGGCTATCCTTATGAAAAGCATGATGTTATAACAGAGGATGGCTACATCCTTGGAACTTACCGGATTCCTCATGGGAAAGGATGCTCAAGGAAAACAg atgcaaataaaaagcaaaagcaacctggattaattttttttctccatcagAGTGAACTCATTTCATACTGGGGCTACCCCTACGAAAAGCACGATGTGATTGCAGAGGATGGTTACATCCTTGGAACTTATCGTATTCCTCATGGTAAAGGGTGCTCAAGGAAAATGggtgaggtgtgctctatcgtgatttgaagagcaaaatgtataaggccattc Alignment from CESAR AGTGAACTTATTTCTTACTGGGGCTATCCTTATGAAAAGCATGATGTTATAACAGAGGATGGCTACATCCTTGGAACTTACCGGATTCCTCATGGGAAAGGATGCTCAAGGAAAACAg atgcaaataaaaagcaaaagcaacctggattaattttttttctccatcagAGTGAACTCATTTCATACTGGGGCTACCCCTACGAAAAGCACGATGTGATTGCAGAGGATGGTTACATCCTTGGAACTTATCGTATTCCTCATGGTAAAGGGTGCTCAAGGAAAATGggtgaggtgtgctctatcgtgatttgaagagcaaaatgtataaggccattc Alignment from Spaln_aa2Genome AGTGAACTTATTTCTTACTGGGGCTATCCTTATGAAAAGCATGATGTTATAACAGAGGATGGCTACATCCTTGGAACTTACCGGATTCCTCATGGGAAAGGATGCTCAAGGAAAACAG atgcaaataaaaagcaaaagcaacctggattaattttttttctccatcagAGTGAACTCATTTCATACTGGGGCTACCCCTACGAAAAGCACGATGTGATTGCAGAGGATGGTTACATCCTTGGAACTTATCGTATTCCTCATGGTAAAGGGTGCTCAAGGAAAATGGgtgaggtgtgctctatcgtgatttgaagagcaaaatgtataaggccattc Alignment from Spaln_nt2Genome AGTGAACTTATTTCTTACTGGGGCTATCCTTATGAAAAGCATGATGTTATAACAGAGGATGGCTACATCCTTGGAACTTACCGGATTCCTCATGGGAAAGGATGCTCAAGGAAAACAG atgcaaataaaaagcaaaagcaacctggattaattttttttctccatcagAGTGAACTCATTTCATACTGGGGCTACCCCTACGAAAAGCACGATGTGATTGCAGAGGATGGTTACATCCTTGGAACTTATCGTATTCCTCATGGTAAAGGGTGCTCAAGGAAAATGGgtgaggtgtgctctatcgtgatttgaagagcaaaatgtataaggccattc Alignment from Pairagon AGTGAACTTATTTCTTACTGGGGCTATCCTTATGAAAAGCATGATGTTATAACAGAGGATGGCTACATCCTTGGAACTTACCGGATTCCTCATGGGAAAGGATGCTCAAGGAAAACAG atgcaaataaaaagcaaaagcaacctggattaattttttttctccatcagAGTGAACTCATTTCATACTGGGGCTACCCCTACGAAAAGCACGATGTGATTGCAGAGGATGGTTACATCCTTGGAACTTATCGTATTCCTCATGGTAAAGGGTGCTCAAGGAAAATGGgtgaggtgtgctctatcgtgatttgaagagcaaaatgtataaggccattc Alignment from Exonerate_protein2genome AGTGAACTTATTTCTTACTGGGGCTATCCTTATGAAAAGCATGATGTTATAACAGAGGATGGCTACATCCTTGGAACTTACCGGATTCCTCATGGGAAAGGATGCTCAAGGAAAACAG atgcaaataaaaagcaaaagcaacctggattaattttttttctccatcagAGTGAACTCATTTCATACTGGGGCTACCCCTACGAAAAGCACGATGTGATTGCAGAGGATGGTTACATCCTTGGAACTTATCGTATTCCTCATGGTAAAGGGTGCTCAAGGAAAATGGgtgaggtgtgctctatcgtgatttgaagagcaaaatgtataaggccattc Alignment from Exonerate_coding2genome AGTGAACTTATTTCTTACTGGGGCTATCCTTATGAAAAGCATGATGTTATAACAGAGGATGGCTACATCCTTGGAACTTACCGGATTCCTCATGGGAAAGGATGCTCAAGGAAAACAG atgcaaataaaaagcaaaagcaacctggattaattttttttctccatcagAGTGAACTCATTTCATACTGGGGCTACCCCTACGAAAAGCACGATGTGATTGCAGAGGATGGTTACATCCTTGGAACTTATCGTATTCCTCATGGTAAAGGGTGCTCAAGGAAAATGGgtgaggtgtgctctatcgtgatttgaagagcaaaatgtataaggccattc Alignment from GeneWise AGTGAACTTATTTCTTACTGGGGCTATCCTTATGAAAAGCATGATGTTATAACAGAGGATGGCTACATCCTTGGAACTTACCGGATTCCTCATGGGAAAGGATGCTCAAGGAAAACAG atgcaaataaaaagcaaaagcaacctggattaattttttttctccatcagAGTGAACTCATTTCATACTGGGGCTACCCCTACGAAAAGCACGATGTGATTGCAGAGGATGGTTACATCCTTGGAACTTATCGTATTCCTCATGGTAAAGGGTGCTCAAGGAAAATGGgtgaggtgtgctctatcgtgatttgaagagcaaaatgtataaggccattc #### Lipk_ID6863_7 --> 0 - 0 Original Alignment AGTCGCTTGGATGTTTATCTGTCACAGAGTCCTGCAGGAACATCTGTTCAGAACATGCTGCACTGGGCCCAG agtaccaatctagtggagtggtcttgagaaccctctgtttcctcccccagAGCTGCTTGGATGTTTATCTATCACAGAGTCCTACAGGAATATCTATTCCGAACATGCTTCACTGGGCCCAGgtaagcttttccattcataatgctgtttcacctctcccagagattccagt Alignment from CESAR AGTCGCTTGGATGTTTATCTGTCACAGAGTCCTGCAGGAACATCTGTTCAGAACATGCTGCACTGGGCCCAG agtaccaatctagtggagtggtcttgagaaccctctgtttcctcccccagAGCTGCTTGGATGTTTATCTATCACAGAGTCCTACAGGAATATCTATTCCGAACATGCTTCACTGGGCCCAGgtaagcttttccattcataatgctgtttcacctctcccagagattccagt Alignment from Spaln_aa2Genome AGTCGCTTGGATGTTTATCTGTCACAGAGTCCTGCAGGAACATCTGTTCAGAACATGCTGCACTGGGCCCAG agtaccaatctagtggagtggtcttgagaaccctctgtttcctcccccagAGCTGCTTGGATGTTTATCTATCACAGAGTCCTACAGGAATATCTATTCCGAACATGCTTCACTGGGCCCAGgtaagcttttccattcataatgctgtttcacctctcccagagattccagt Alignment from Spaln_nt2Genome AGTCGCTTGGATGTTTATCTGTCACAGAGTCCTGCAGGAACATCTGTTCAGAACATGCTGCACTGGGCCCAG agtaccaatctagtggagtggtcttgagaaccctctgtttcctcccccagAGCTGCTTGGATGTTTATCTATCACAGAGTCCTACAGGAATATCTATTCCGAACATGCTTCACTGGGCCCAGgtaagcttttccattcataatgctgtttcacctctcccagagattccagt Alignment from Pairagon AGTCGCTTGGATGTTTATCTGTCACAGAGTCCTGCAGGAACATCTGTTCAGAACATGCTGCACTGGGCCCAG agtaccaatctagtggagtggtcttgagaaccctctgtttcctcccccagAGCTGCTTGGATGTTTATCTATCACAGAGTCCTACAGGAATATCTATTCCGAACATGCTTCACTGGGCCCAGgtaagcttttccattcataatgctgtttcacctctcccagagattccagt Alignment from Exonerate_protein2genome AGTCGCTTGGATGTTTATCTGTCACAGAGTCCTGCAGGAACATCTGTTCAGAACATGCTGCACTGGGCCCAG agtaccaatctagtggagtggtcttgagaaccctctgtttcctcccccagAGCTGCTTGGATGTTTATCTATCACAGAGTCCTACAGGAATATCTATTCCGAACATGCTTCACTGGGCCCAGgtaagcttttccattcataatgctgtttcacctctcccagagattccagt Alignment from Exonerate_coding2genome AGTCGCTTGGATGTTTATCTGTCACAGAGTCCTGCAGGAACATCTGTTCAGAACATGCTGCACTGGGCCCAG agtaccaatctagtggagtggtcttgagaaccctctgtttcctcccccagAGCTGCTTGGATGTTTATCTATCACAGAGTCCTACAGGAATATCTATTCCGAACATGCTTCACTGGGCCCAGgtaagcttttccattcataatgctgtttcacctctcccagagattccagt Alignment from GeneWise AGTCGCTTGGATGTTTATCTGTCACAGAGTCCTGCAGGAACATCTGTTCAGAACATGCTGCACTGGGCCCAG agtaccaatctagtggagtggtcttgagaaccctctgtttcctcccccagAGCTGCTTGGATGTTTATCTATCACAGAGTCCTACAGGAATATCTATTCCGAACATGCTTCACTGGGCCCAGgtaagcttttccattcataatgctgtttcacctctcccagagattccagt #### Lipn_ID6871_3 --> 2 - 2 Original Alignment gaCCCCGGCCTGTTGTATATATGCAACATGCCTTGTTTGCAGACAATGCCTACTGGCTTGAGAATTTTGCCAATGGAAGCCTAGGGTTCATACTAGCAGATGCAGGTTATGATGTGTGGATGGGAAACAGTCGAGGAAACACTTGGTCAAGAAGACACAAAACTCTCTCAGCAAATGAAGAGAAATTCTGGGCTTTTag tgtgtgtgtgtttctagaatttagatttttcattcctttttttttttcagggCCCCGACCTGTGGTATATATGCAACATGCACTGTTTGCAGATAATGCCTATTGGCTTGAGAATGTTGCTAATGGGAGTCAAGAGTTCATACTAACTGCTGCAGGTTATGATGTGTGGATGGAAAATAGTCGATCGAACACTTGGTCACAAAGACACAAAACACTCTCAGCAAATGAAGAGAAATTTTGGGCTTTCaggtaaggtatagcatgaaatttttggggagttaagggatctaaatgcaact Alignment from CESAR gaCCCCGGCCTGTTGTATATATGCAACATGCCTTGTTTGCAGACAATGCCTACTGGCTTGAGAATTTTGCCAATGGAAGCCTAGGGTTCATACTAGCAGATGCAGGTTATGATGTGTGGATGGGAAACAGTCGAGGAAACACTTGGTCAAGAAGACACAAAACTCTCTCAGCAAATGAAGAGAAATTCTGGGCTTTTag tgtgtgtgtgtttctagaatttagatttttcattcctttttttttttcagggCCCCGACCTGTGGTATATATGCAACATGCACTGTTTGCAGATAATGCCTATTGGCTTGAGAATGTTGCTAATGGGAGTCAAGAGTTCATACTAACTGCTGCAGGTTATGATGTGTGGATGGAAAATAGTCGATCGAACACTTGGTCACAAAGACACAAAACACTCTCAGCAAATGAAGAGAAATTTTGGGCTTTCaggtaaggtatagcatgaaatttttggggagttaagggatctaaatgcaact Alignment from Spaln_aa2Genome GACCCCGGCCTGTTGTATATATGCAACATGCCTTGTTTGCAGACAATGCCTACTGGCTTGAGAATTTTGCCAATGGAAGCCTAGGGTTCATACTAGCAGATGCAGGTTATGATGTGTGGATGGGAAACAGTCGAGGAAACACTTGGTCAAGAAGACACAAAACTCTCTCAGCAAATGAAGAGAAATTCTGGGCTTTTAG tgtgtgtgtgtttctagaatttagatttttcattcctttttttttttcagGGCCCCGACCTGTGGTATATATGCAACATGCACTGTTTGCAGATAATGCCTATTGGCTTGAGAATGTTGCTAATGGGAGTCAAGAGTTCATACTAACTGCTGCAGGTTATGATGTGTGGATGGAAAATAGTCGATCGAACACTTGGTCACAAAGACACAAAACACTCTCAGCAAATGAAGAGAAATTTTGGGCTTTCAGgtaaggtatagcatgaaatttttggggagttaagggatctaaatgcaact Alignment from Spaln_nt2Genome GACCCCGGCCTGTTGTATATATGCAACATGCCTTGTTTGCAGACAATGCCTACTGGCTTGAGAATTTTGCCAATGGAAGCCTAGGGTTCATACTAGCAGATGCAGGTTATGATGTGTGGATGGGAAACAGTCGAGGAAACACTTGGTCAAGAAGACACAAAACTCTCTCAGCAAATGAAGAGAAATTCTGGGCTTTTAG tgtgtgtgtgtttctagaatttagatttttcattcctttttttttttcagGGCCCCGACCTGTGGTATATATGCAACATGCACTGTTTGCAGATAATGCCTATTGGCTTGAGAATGTTGCTAATGGGAGTCAAGAGTTCATACTAACTGCTGCAGGTTATGATGTGTGGATGGAAAATAGTCGATCGAACACTTGGTCACAAAGACACAAAACACTCTCAGCAAATGAAGAGAAATTTTGGGCTTTCAGgtaaggtatagcatgaaatttttggggagttaagggatctaaatgcaact Alignment from Pairagon GACCCCGGCCTGTTGTATATATGCAACATGCCTTGTTTGCAGACAATGCCTACTGGCTTGAGAATTTTGCCAATGGAAGCCTAGGGTTCATACTAGCAGATGCAGGTTATGATGTGTGGATGGGAAACAGTCGAGGAAACACTTGGTCAAGAAGACACAAAACTCTCTCAGCAAATGAAGAGAAATTCTGGGCTTTTAG tgtgtgtgtgtttctagaatttagatttttcattcctttttttttttcagGGCCCCGACCTGTGGTATATATGCAACATGCACTGTTTGCAGATAATGCCTATTGGCTTGAGAATGTTGCTAATGGGAGTCAAGAGTTCATACTAACTGCTGCAGGTTATGATGTGTGGATGGAAAATAGTCGATCGAACACTTGGTCACAAAGACACAAAACACTCTCAGCAAATGAAGAGAAATTTTGGGCTTTCAGgtaaggtatagcatgaaatttttggggagttaagggatctaaatgcaact Alignment from Exonerate_protein2genome GACCCCGGCCTGTTGTATATATGCAACATGCCTTGTTTGCAGACAATGCCTACTGGCTTGAGAATTTTGCCAATGGAAGCCTAGGGTTCATACTAGCAGATGCAGGTTATGATGTGTGGATGGGAAACAGTCGAGGAAACACTTGGTCAAGAAGACACAAAACTCTCTCAGCAAATGAAGAGAAATTCTGGGCTTTTAG tgtgtgtgtgtttctagaatttagatttttcattcctttttttttttcagGGCCCCGACCTGTGGTATATATGCAACATGCACTGTTTGCAGATAATGCCTATTGGCTTGAGAATGTTGCTAATGGGAGTCAAGAGTTCATACTAACTGCTGCAGGTTATGATGTGTGGATGGAAAATAGTCGATCGAACACTTGGTCACAAAGACACAAAACACTCTCAGCAAATGAAGAGAAATTTTGGGCTTTCAGgtaaggtatagcatgaaatttttggggagttaagggatctaaatgcaact Alignment from Exonerate_coding2genome GACCCCGGCCTGTTGTATATATGCAACATGCCTTGTTTGCAGACAATGCCTACTGGCTTGAGAATTTTGCCAATGGAAGCCTAGGGTTCATACTAGCAGATGCAGGTTATGATGTGTGGATGGGAAACAGTCGAGGAAACACTTGGTCAAGAAGACACAAAACTCTCTCAGCAAATGAAGAGAAATTCTGGGCTTTTAG tgtgtgtgtgtttctagaatttagatttttcattcctttttttttttcagGGCCCCGACCTGTGGTATATATGCAACATGCACTGTTTGCAGATAATGCCTATTGGCTTGAGAATGTTGCTAATGGGAGTCAAGAGTTCATACTAACTGCTGCAGGTTATGATGTGTGGATGGAAAATAGTCGATCGAACACTTGGTCACAAAGACACAAAACACTCTCAGCAAATGAAGAGAAATTTTGGGCTTTCAGgtaaggtatagcatgaaatttttggggagttaagggatctaaatgcaact Alignment from GeneWise GACCCCGGCCTGTTGTATATATGCAACATGCCTTGTTTGCAGACAATGCCTACTGGCTTGAGAATTTTGCCAATGGAAGCCTAGGGTTCATACTAGCAGATGCAGGTTATGATGTGTGGATGGGAAACAGTCGAGGAAACACTTGGTCAAGAAGACACAAAACTCTCTCAGCAAATGAAGAGAAATTCTGGGCTTTTAG tgtgtgtgtgtttctagaatttagatttttcattcctttttttttttcagGGCCCCGACCTGTGGTATATATGCAACATGCACTGTTTGCAGATAATGCCTATTGGCTTGAGAATGTTGCTAATGGGAGTCAAGAGTTCATACTAACTGCTGCAGGTTATGATGTGTGGATGGAAAATAGTCGATCGAACACTTGGTCACAAAGACACAAAACACTCTCAGCAAATGAAGAGAAATTTTGGGCTTTCAGgtaaggtatagcatgaaatttttggggagttaagggatctaaatgcaact #### Lipn_ID6872_4 --> 1 - 1 Original Alignment cTTCAATGAAATGGCCAAATATGACCTCCCAGGGATAATAGATTTCATTGTGAATAAAACAGGTCAGGAGAAGTTGTACTTCATTGGACATTCACTCGGCACTACAATAg tcaaatgttaggtataattatggcaatctgtgctttctcttctgttgcagcTTCAATGAAATGGCAAAATATGACCTCCCAGGAATAATAGATTTCATTGTGAATAATACAGGTCAGGAGAAGTTGTATTTCATTGGACATTCACTTGGCACTACAATAggtgagtttagatgagttgatttcattggggaccaaacttaatgtctcttt Alignment from CESAR cTTCAATGAAATGGCCAAATATGACCTCCCAGGGATAATAGATTTCATTGTGAATAAAACAGGTCAGGAGAAGTTGTACTTCATTGGACATTCACTCGGCACTACAATAg tcaaatgttaggtataattatggcaatctgtgctttctcttctgttgcagcTTCAATGAAATGGCAAAATATGACCTCCCAGGAATAATAGATTTCATTGTGAATAATACAGGTCAGGAGAAGTTGTATTTCATTGGACATTCACTTGGCACTACAATAggtgagtttagatgagttgatttcattggggaccaaacttaatgtctcttt Alignment from Spaln_aa2Genome CTTCAATGAAATGGCCAAATATGACCTCCCAGGGATAATAGATTTCATTGTGAATAAAACAGGTCAGGAGAAGTTGTACTTCATTGGACATTCACTCGGCACTACAATAG tcaaatgttaggtataattatggcaatctgtgctttctcttctgttgcagCTTCAATGAAATGGCAAAATATGACCTCCCAGGAATAATAGATTTCATTGTGAATAATACAGGTCAGGAGAAGTTGTATTTCATTGGACATTCACTTGGCACTACAATAGgtgagtttagatgagttgatttcattggggaccaaacttaatgtctcttt Alignment from Spaln_nt2Genome CTTCAATGAAATGGCCAAATATGACCTCCCAGGGATAATAGATTTCATTGTGAATAAAACAGGTCAGGAGAAGTTGTACTTCATTGGACATTCACTCGGCACTACAATAG tcaaatgttaggtataattatggcaatctgtgctttctcttctgttgcagCTTCAATGAAATGGCAAAATATGACCTCCCAGGAATAATAGATTTCATTGTGAATAATACAGGTCAGGAGAAGTTGTATTTCATTGGACATTCACTTGGCACTACAATAGgtgagtttagatgagttgatttcattggggaccaaacttaatgtctcttt Alignment from Pairagon CTTCAATGAAATGGCCAAATATGACCTCCCAGGGATAATAGATTTCATTGTGAATAAAACAGGTCAGGAGAAGTTGTACTTCATTGGACATTCACTCGGCACTACAATAG tcaaatgttaggtataattatggcaatctgtgctttctcttctgttgcagCTTCAATGAAATGGCAAAATATGACCTCCCAGGAATAATAGATTTCATTGTGAATAATACAGGTCAGGAGAAGTTGTATTTCATTGGACATTCACTTGGCACTACAATAGgtgagtttagatgagttgatttcattggggaccaaacttaatgtctcttt Alignment from Exonerate_protein2genome CTTCAATGAAATGGCCAAATATGACCTCCCAGGGATAATAGATTTCATTGTGAATAAAACAGGTCAGGAGAAGTTGTACTTCATTGGACATTCACTCGGCACTACAATAG tcaaatgttaggtataattatggcaatctgtgctttctcttctgttgcagCTTCAATGAAATGGCAAAATATGACCTCCCAGGAATAATAGATTTCATTGTGAATAATACAGGTCAGGAGAAGTTGTATTTCATTGGACATTCACTTGGCACTACAATAGgtgagtttagatgagttgatttcattggggaccaaacttaatgtctcttt Alignment from Exonerate_coding2genome CTTCAATGAAATGGCCAAATATGACCTCCCAGGGATAATAGATTTCATTGTGAATAAAACAGGTCAGGAGAAGTTGTACTTCATTGGACATTCACTCGGCACTACAATAG tcaaatgttaggtataattatggcaatctgtgctttctcttctgttgcagCTTCAATGAAATGGCAAAATATGACCTCCCAGGAATAATAGATTTCATTGTGAATAATACAGGTCAGGAGAAGTTGTATTTCATTGGACATTCACTTGGCACTACAATAGgtgagtttagatgagttgatttcattggggaccaaacttaatgtctcttt Alignment from GeneWise CTTCAATGAAATGGCCAAATATGACCTCCCAGGGATAATAGATTTCATTGTGAATAAAACAGGTCAGGAGAAGTTGTACTTCATTGGACATTCACTCGGCACTACAATAG tcaaatgttaggtataattatggcaatctgtgctttctcttctgttgcagCTTCAATGAAATGGCAAAATATGACCTCCCAGGAATAATAGATTTCATTGTGAATAATACAGGTCAGGAGAAGTTGTATTTCATTGGACATTCACTTGGCACTACAATAGgtgagtttagatgagttgatttcattggggaccaaacttaatgtctcttt #### Lipn_ID6873_5 --> 2 - 0 Original Alignment gaTTTGTAGCCTTTTCCACCATGCCTGAACTGGCGCAAAGAATCAAAATGAATTTTGCCTTGGGTCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACCAATTTGTTTCTACTTCCAAAATCCATAATCAAG acaataggttgctgggattagctatgcacatcttctgtgtcttgccctagggTTTGTAGCATTTTCTACTATGCCTGAACTAGCACAAAGAATCAAAATGAATTTTGCCTTGGGCCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACTAATCTGTTTCTACTTCCAAAGTCCATCATCAAGgtatgtcattctcagcttttcacttggtgacaagagctatagttggcata Alignment from CESAR gaTTTGTAGCCTTTTCCACCATGCCTGAACTGGCGCAAAGAATCAAAATGAATTTTGCCTTGGGTCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACCAATTTGTTTCTACTTCCAAAATCCATAATCAAG acaataggttgctgggattagctatgcacatcttctgtgtcttgccctagggTTTGTAGCATTTTCTACTATGCCTGAACTAGCACAAAGAATCAAAATGAATTTTGCCTTGGGCCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACTAATCTGTTTCTACTTCCAAAGTCCATCATCAAGgtatgtcattctcagcttttcacttggtgacaagagctatagttggcata Alignment from Spaln_aa2Genome GATTTGTAGCCTTTTCCACCATGCCTGAACTGGCGCAAAGAATCAAAATGAATTTTGCCTTGGGTCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACCAATTTGTTTCTACTTCCAAAATCCATAATCAAG acaataggttgctgggattagctatgcacatcttctgtgtcttgccctagGGTTTGTAGCATTTTCTACTATGCCTGAACTAGCACAAAGAATCAAAATGAATTTTGCCTTGGGCCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACTAATCTGTTTCTACTTCCAAAGTCCATCATCAAGgtatgtcattctcagcttttcacttggtgacaagagctatagttggcata Alignment from Spaln_nt2Genome GATTTGTAGCCTTTTCCACCATGCCTGAACTGGCGCAAAGAATCAAAATGAATTTTGCCTTGGGTCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACCAATTTGTTTCTACTTCCAAAATCCATAATCAAG acaataggttgctgggattagctatgcacatcttctgtgtcttgccctagGGTTTGTAGCATTTTCTACTATGCCTGAACTAGCACAAAGAATCAAAATGAATTTTGCCTTGGGCCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACTAATCTGTTTCTACTTCCAAAGTCCATCATCAAGgtatgtcattctcagcttttcacttggtgacaagagctatagttggcata Alignment from Pairagon GATTTGTAGCCTTTTCCACCATGCCTGAACTGGCGCAAAGAATCAAAATGAATTTTGCCTTGGGTCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACCAATTTGTTTCTACTTCCAAAATCCATAATCAAG acaataggttgctgggattagctatgcacatcttctgtgtcttgccctagGGTTTGTAGCATTTTCTACTATGCCTGAACTAGCACAAAGAATCAAAATGAATTTTGCCTTGGGCCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACTAATCTGTTTCTACTTCCAAAGTCCATCATCAAGgtatgtcattctcagcttttcacttggtgacaagagctatagttggcata Alignment from Exonerate_protein2genome GATTTGTAGCCTTTTCCACCATGCCTGAACTGGCGCAAAGAATCAAAATGAATTTTGCCTTGGGTCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACCAATTTGTTTCTACTTCCAAAATCCATAATCAAG acaataggttgctgggattagctatgcacatcttctgtgtcttgccctagGGTTTGTAGCATTTTCTACTATGCCTGAACTAGCACAAAGAATCAAAATGAATTTTGCCTTGGGCCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACTAATCTGTTTCTACTTCCAAAGTCCATCATCAAGgtatgtcattctcagcttttcacttggtgacaagagctatagttggcata Alignment from Exonerate_coding2genome GATTTGTAGCCTTTTCCACCATGCCTGAACTGGCGCAAAGAATCAAAATGAATTTTGCCTTGGGTCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACCAATTTGTTTCTACTTCCAAAATCCATAATCAAG acaataggttgctgggattagctatgcacatcttctgtgtcttgccctagGGTTTGTAGCATTTTCTACTATGCCTGAACTAGCACAAAGAATCAAAATGAATTTTGCCTTGGGCCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACTAATCTGTTTCTACTTCCAAAGTCCATCATCAAGgtatgtcattctcagcttttcacttggtgacaagagctatagttggcata Alignment from GeneWise GATTTGTAGCCTTTTCCACCATGCCTGAACTGGCGCAAAGAATCAAAATGAATTTTGCCTTGGGTCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACCAATTTGTTTCTACTTCCAAAATCCATAATCAAG acaataggttgctgggattagctatgcacatcttctgtgtcttgccctagGGTTTGTAGCATTTTCTACTATGCCTGAACTAGCACAAAGAATCAAAATGAATTTTGCCTTGGGCCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACTAATCTGTTTCTACTTCCAAAGTCCATCATCAAGgtatgtcattctcagcttttcacttggtgacaagagctatagttggcata #### Lipn_ID6876_8 --> 0 - 0 Original Alignment CTTTACCGATCTGATGAATTCAGAGCTTATGACTGGGGAAGTGAAGCTGAAAATATGAATCACTACAACCAG tgacatttgattgatagagaacacaaccttcaatgatccttgtatttcagCTTTACCAATCTGATGAGTTCCGGTCATATGACTGGGGAAGTGAGGCTGAGAATATGAATCATTACAACCAGgtcagtgctagtgagagctataaagagtttttctatggttgaccaatgtc Alignment from CESAR CTTTACCGATCTGATGAATTCAGAGCTTATGACTGGGGAAGTGAAGCTGAAAATATGAATCACTACAACCAG tgacatttgattgatagagaacacaaccttcaatgatccttgtatttcagCTTTACCAATCTGATGAGTTCCGGTCATATGACTGGGGAAGTGAGGCTGAGAATATGAATCATTACAACCAGgtcagtgctagtgagagctataaagagtttttctatggttgaccaatgtc Alignment from Spaln_aa2Genome CTTTACCGATCTGATGAATTCAGAGCTTATGACTGGGGAAGTGAAGCTGAAAATATGAATCACTACAACCAG tgacatttgattgatagagaacacaaccttcaatgatccttgtatttcagCTTTACCAATCTGATGAGTTCCGGTCATATGACTGGGGAAGTGAGGCTGAGAATATGAATCATTACAACCAGgtcagtgctagtgagagctataaagagtttttctatggttgaccaatgtc Alignment from Spaln_nt2Genome CTTTACCGATCTGATGAATTCAGAGCTTATGACTGGGGAAGTGAAGCTGAAAATATGAATCACTACAACCAG tgacatttgattgatagagaacacaaccttcaatgatccttgtatttcagCTTTACCAATCTGATGAGTTCCGGTCATATGACTGGGGAAGTGAGGCTGAGAATATGAATCATTACAACCAGgtcagtgctagtgagagctataaagagtttttctatggttgaccaatgtc Alignment from Pairagon CTTTACCGATCTGATGAATTCAGAGCTTATGACTGGGGAAGTGAAGCTGAAAATATGAATCACTACAACCAG tgacatttgattgatagagaacacaaccttcaatgatccttgtatttcagCTTTACCAATCTGATGAGTTCCGGTCATATGACTGGGGAAGTGAGGCTGAGAATATGAATCATTACAACCAGgtcagtgctagtgagagctataaagagtttttctatggttgaccaatgtc Alignment from Exonerate_protein2genome CTTTACCGATCTGATGAATTCAGAGCTTATGACTGGGGAAGTGAAGCTGAAAATATGAATCACTACAACCAG tgacatttgattgatagagaacacaaccttcaatgatccttgtatttcagCTTTACCAATCTGATGAGTTCCGGTCATATGACTGGGGAAGTGAGGCTGAGAATATGAATCATTACAACCAGgtcagtgctagtgagagctataaagagtttttctatggttgaccaatgtc Alignment from Exonerate_coding2genome CTTTACCGATCTGATGAATTCAGAGCTTATGACTGGGGAAGTGAAGCTGAAAATATGAATCACTACAACCAG tgacatttgattgatagagaacacaaccttcaatgatccttgtatttcagCTTTACCAATCTGATGAGTTCCGGTCATATGACTGGGGAAGTGAGGCTGAGAATATGAATCATTACAACCAGgtcagtgctagtgagagctataaagagtttttctatggttgaccaatgtc Alignment from GeneWise CTTTACCGATCTGATGAATTCAGAGCTTATGACTGGGGAAGTGAAGCTGAAAATATGAATCACTACAACCAG tgacatttgattgatagagaacacaaccttcaatgatccttgtatttcagCTTTACCAATCTGATGAGTTCCGGTCATATGACTGGGGAAGTGAGGCTGAGAATATGAATCATTACAACCAGgtcagtgctagtgagagctataaagagtttttctatggttgaccaatgtc #### Loxl4_ID8565_10 --> 2 - 2 Original Alignment gtGCTCCAGACCTCGTGATGAACGCCCAGCTGGTACAAGAGACGGCGTACTTGGAGGATCGTCCACTCAGCATGCTGTACTGTGCTCACGAGGAAAACTGCCTTTCCAAGTCCGCTGATCACATGGACTGGCCCTACGGGTACCGGCGCTTGCTGCGCTTCTCCTCACAGATCTACAACCTTGGCCGGGCCGACTTCCGTCCCAAGGCTGGACGCCACAGCTGGATTTGGCACCAGTGCCACag gcattgactttctaaagtctgaccccccagaaaactgtgtttctctgcaggtGCCCCTGACCTTGTTATGAATGCCCAACTGGTACAAGAAACTCAGTATTTGGAGGACCGTCCACTCAGCATGCTATACTGTGCCCATGAGGAAAATTGCCTTTCCAAGTCTGCTGATCACATGGATTGGCCTTATGGGTACCAAGGCTTGCTGCGCTTCTCTTCCCAAATTTACAACCTTGGGCAAGCTGACTTCCGTCCCAAGGCTGGGCGCCACAGTTGGATATGGCACCAATGCCACcggtgaggccagattagactttgccctggctttaaagtctagagtaggtcta Alignment from CESAR gtGCTCCAGACCTCGTGATGAACGCCCAGCTGGTACAAGAGACGGCGTACTTGGAGGATCGTCCACTCAGCATGCTGTACTGTGCTCACGAGGAAAACTGCCTTTCCAAGTCCGCTGATCACATGGACTGGCCCTACGGGTACCGGCGCTTGCTGCGCTTCTCCTCACAGATCTACAACCTTGGCCGGGCCGACTTCCGTCCCAAGGCTGGACGCCACAGCTGGATTTGGCACCAGTGCCACag gcattgactttctaaagtctgaccccccagaaaactgtgtttctctgcaggtGCCCCTGACCTTGTTATGAATGCCCAACTGGTACAAGAAACTCAGTATTTGGAGGACCGTCCACTCAGCATGCTATACTGTGCCCATGAGGAAAATTGCCTTTCCAAGTCTGCTGATCACATGGATTGGCCTTATGGGTACCAAGGCTTGCTGCGCTTCTCTTCCCAAATTTACAACCTTGGGCAAGCTGACTTCCGTCCCAAGGCTGGGCGCCACAGTTGGATATGGCACCAATGCCACcggtgaggccagattagactttgccctggctttaaagtctagagtaggtcta Alignment from Spaln_aa2Genome GTGCTCCAGACCTCGTGATGAACGCCCAGCTGGTACAAGAGACGGCGTACTTGGAGGATCGTCCACTCAGCATGCTGTACTGTGCTCACGAGGAAAACTGCCTTTCCAAGTCCGCTGATCACATGGACTGGCCCTACGGGTACCGGCGCTTGCTGCGCTTCTCCTCACAGATCTACAACCTTGGCCGGGCCGACTTCCGTCCCAAGGCTGGACGCCACAGCTGGATTTGGCACCAGTGCCACAG gcattgactttctaaagtctgaccccccagaaaactgtgtttctctgcagGTGCCCCTGACCTTGTTATGAATGCCCAACTGGTACAAGAAACTCAGTATTTGGAGGACCGTCCACTCAGCATGCTATACTGTGCCCATGAGGAAAATTGCCTTTCCAAGTCTGCTGATCACATGGATTGGCCTTATGGGTACCAAGGCTTGCTGCGCTTCTCTTCCCAAATTTACAACCTTGGGCAAGCTGACTTCCGTCCCAAGGCTGGGCGCCACAGTTGGATATGGCACCAATGCCACCGgtgaggccagattagactttgccctggctttaaagtctagagtaggtcta Alignment from Spaln_nt2Genome GTGCTCCAGACCTCGTGATGAACGCCCAGCTGGTACAAGAGACGGCGTACTTGGAGGATCGTCCACTCAGCATGCTGTACTGTGCTCACGAGGAAAACTGCCTTTCCAAGTCCGCTGATCACATGGACTGGCCCTACGGGTACCGGCGCTTGCTGCGCTTCTCCTCACAGATCTACAACCTTGGCCGGGCCGACTTCCGTCCCAAGGCTGGACGCCACAGCTGGATTTGGCACCAGTGCCACAG gcattgactttctaaagtctgaccccccagaaaactgtgtttctctgcagGTGCCCCTGACCTTGTTATGAATGCCCAACTGGTACAAGAAACTCAGTATTTGGAGGACCGTCCACTCAGCATGCTATACTGTGCCCATGAGGAAAATTGCCTTTCCAAGTCTGCTGATCACATGGATTGGCCTTATGGGTACCAAGGCTTGCTGCGCTTCTCTTCCCAAATTTACAACCTTGGGCAAGCTGACTTCCGTCCCAAGGCTGGGCGCCACAGTTGGATATGGCACCAATGCCACCGgtgaggccagattagactttgccctggctttaaagtctagagtaggtcta Alignment from Pairagon GTGCTCCAGACCTCGTGATGAACGCCCAGCTGGTACAAGAGACGGCGTACTTGGAGGATCGTCCACTCAGCATGCTGTACTGTGCTCACGAGGAAAACTGCCTTTCCAAGTCCGCTGATCACATGGACTGGCCCTACGGGTACCGGCGCTTGCTGCGCTTCTCCTCACAGATCTACAACCTTGGCCGGGCCGACTTCCGTCCCAAGGCTGGACGCCACAGCTGGATTTGGCACCAGTGCCACAG gcattgactttctaaagtctgaccccccagaaaactgtgtttctctgcagGTGCCCCTGACCTTGTTATGAATGCCCAACTGGTACAAGAAACTCAGTATTTGGAGGACCGTCCACTCAGCATGCTATACTGTGCCCATGAGGAAAATTGCCTTTCCAAGTCTGCTGATCACATGGATTGGCCTTATGGGTACCAAGGCTTGCTGCGCTTCTCTTCCCAAATTTACAACCTTGGGCAAGCTGACTTCCGTCCCAAGGCTGGGCGCCACAGTTGGATATGGCACCAATGCCACCGgtgaggccagattagactttgccctggctttaaagtctagagtaggtcta Alignment from Exonerate_protein2genome GTGCTCCAGACCTCGTGATGAACGCCCAGCTGGTACAAGAGACGGCGTACTTGGAGGATCGTCCACTCAGCATGCTGTACTGTGCTCACGAGGAAAACTGCCTTTCCAAGTCCGCTGATCACATGGACTGGCCCTACGGGTACCGGCGCTTGCTGCGCTTCTCCTCACAGATCTACAACCTTGGCCGGGCCGACTTCCGTCCCAAGGCTGGACGCCACAGCTGGATTTGGCACCAGTGCCACAG gcattgactttctaaagtctgaccccccagaaaactgtgtttctctgcagGTGCCCCTGACCTTGTTATGAATGCCCAACTGGTACAAGAAACTCAGTATTTGGAGGACCGTCCACTCAGCATGCTATACTGTGCCCATGAGGAAAATTGCCTTTCCAAGTCTGCTGATCACATGGATTGGCCTTATGGGTACCAAGGCTTGCTGCGCTTCTCTTCCCAAATTTACAACCTTGGGCAAGCTGACTTCCGTCCCAAGGCTGGGCGCCACAGTTGGATATGGCACCAATGCCACCGgtgaggccagattagactttgccctggctttaaagtctagagtaggtcta Alignment from Exonerate_coding2genome gcattgactttctaaagtctgaccccccagaaaactgtgtttctctgcaggtgcccctgaccttgttatgaatgcccaactggtacaagaaactcagtatttggaggaccgtccactcagcatgctatactgtgcccatgaggaaaattgcctttccaagtctgctgatcacatggattggccttatgggtaccaaggcttgctgcgcttctcttcccaaatttacaaccttgggcaagctgacttccgtcccaaggctgggcgccacagttggatatggcaccaatgccaccggtgaggccagattagactttgccctggctttaaagtctagagtaggtcta Alignment from GeneWise GTGCTCCAGACCTCGTGATGAACGCCCAGCTGGTACAAGAGACGGCGTACTTGGAGGATCGTCCACTCAGCATGCTGTACTGTGCTCACGAGGAAAACTGCCTTTCCAAGTCCGCTGATCACATGGACTGGCCCTACGGGTACCGGCGCTTGCTGCGCTTCTCCTCACAGATCTACAACCTTGGCCGGGCCGACTTCCGTCCCAAGGCTGGACGCCACAGCTGGATTTGGCACCAGTGCCACAG gcattgactttctaaagtctgaccccccagaaaactgtgtttctctgcagGTGCCCCTGACCTTGTTATGAATGCCCAACTGGTACAAGAAACTCAGTATTTGGAGGACCGTCCACTCAGCATGCTATACTGTGCCCATGAGGAAAATTGCCTTTCCAAGTCTGCTGATCACATGGATTGGCCTTATGGGTACCAAGGCTTGCTGCGCTTCTCTTCCCAAATTTACAACCTTGGGCAAGCTGACTTCCGTCCCAAGGCTGGGCGCCACAGTTGGATATGGCACCAATGCCACCGgtgaggccagattagactttgccctggctttaaagtctagagtaggtcta #### Loxl4_ID8571_4 --> 1 - 2 Original Alignment aAAAGTCTGGAATCTGAAGATGAAGGATCCCAAGTCTag agaatgttttagcaccctgtgactgaccctgaccctggcctcctcttcagaAAAGTCTGGAATCTGAAGATGAAGGACCACAAATCTaggtaaggagggttagtagccaatgtagtcctgtgtctcataaatcctcccc Alignment from CESAR aAAAGTCTGGAATCTGAAGATGAAGGATCCCAAGTCTag agaatgttttagcaccctgtgactgaccctgaccctggcctcctcttcagaAAAGTCTGGAATCTGAAGATGAAGGACCACAAATCTaggtaaggagggttagtagccaatgtagtcctgtgtctcataaatcctcccc Alignment from Spaln_aa2Genome AAAAGTCTGGAATCTGAAGATGAAGGATCCCAAGTCTAG agaatgttttagcaccctgtgactgaccctgaccctggcctcctcttcagAAAAGTCTGGAATCTGAAGATGAAGGACCACAAATCTAGgtaaggagggttagtagccaatgtagtcctgtgtctcataaatcctcccc Alignment from Spaln_nt2Genome AAAAGTCTGGAATCTGAAGATGAAGGATCCCAAGTCTAG agaatgttttagcaccctgtgactgaccctgaccctggcctcctcttcagAAAAGTCTGGAATCTGAAGATGAAGGACCACAAATCTAGgtaaggagggttagtagccaatgtagtcctgtgtctcataaatcctcccc Alignment from Pairagon AAAAGTCTGGAATCTGAAGATGAAGGATCCCAAGTCTAG agaatgttttagcaccctgtgactgaccctgaccctggcctcctcttcagAAAAGTCTGGAATCTGAAGATGAAGGACCACAAATCTAGgtaaggagggttagtagccaatgtagtcctgtgtctcataaatcctcccc Alignment from Exonerate_protein2genome AAAAGTCTGGAATCTGAAGATGAAGGATCCCAAGTCTAG agaatgttttagcaccctgtgactgaccctgaccctggcctcctcttcagAAAAGTCTGGAATCTGAAGATGAAGGACCACAAATCTAGgtaaggagggttagtagccaatgtagtcctgtgtctcataaatcctcccc Alignment from Exonerate_coding2genome AAAAGTCTGGAATCTGAAGATGAAGGATCCCAAGTCTAG agaatgttttagcaccctgtgactgaccctgaccctggcctcctcttcagAAAAGTCTGGAATCTGAAGATGAAGGACCACAAATCTAGgtaaggagggttagtagccaatgtagtcctgtgtctcataaatcctcccc Alignment from GeneWise AAAAGTCTGGAATCTGAAGATGAAGGATCCCAAGTCTAG agaatgttttagcaccctgtgactgaccctgaccctggcctcctcttcagAAAAGTCTGGAATCTGAAGATGAAGGACCACAAATCTAGgtaaggagggttagtagccaatgtagtcctgtgtctcataaatcctcccc #### Lpxn_ID3469_2 --> 2 - 0 Original Alignment atGCCTTATTGGAGGAATTGGAACGCTGCACCTTTCAGGACAGTGAGGAATATTCAAATCCAGTTTCTTGTCACCTGGATCAGCAATCCACAGAGGAGAGCAAGATTCCCCAAACTCCAAAGACCTTGTCATCGCAGGGTAACACAAGTCCCTTGAAG gtaggtggatgacagttcacacaggcagctgagcggctgtcccctcccagatGCCTTATTGGAGGAATTGGAACGCTGCACCTTTCAGGACAGTGAGGAATATTCAAATCCAGTTTCTTGTCACCAGGATCAGCAATTGACAGAAGAGAGCAAGATTCCCCAAACTCCAAAAACCTTGTCATTGCAGGGGAACACAAGTCCCTTGAAGgtgagtatgaaccaagttcacctatgtacctttagcaatttgtaatgttg Alignment from CESAR atGCCTTATTGGAGGAATTGGAACGCTGCACCTTTCAGGACAGTGAGGAATATTCAAATCCAGTTTCTTGTCACCTGGATCAGCAATCCACAGAGGAGAGCAAGATTCCCCAAACTCCAAAGACCTTGTCATCGCAGGGTAACACAAGTCCCTTGAAG gtaggtggatgacagttcacacaggcagctgagcggctgtcccctcccagatGCCTTATTGGAGGAATTGGAACGCTGCACCTTTCAGGACAGTGAGGAATATTCAAATCCAGTTTCTTGTCACCAGGATCAGCAATTGACAGAAGAGAGCAAGATTCCCCAAACTCCAAAAACCTTGTCATTGCAGGGGAACACAAGTCCCTTGAAGgtgagtatgaaccaagttcacctatgtacctttagcaatttgtaatgttg Alignment from Spaln_aa2Genome ATGCCTTATTGGAGGAATTGGAACGCTGCACCTTTCAGGACAGTGAGGAATATTCAAATCCAGTTTCTTGTCACCTGGATCAGCAATCCACAGAGGAGAGCAAGATTCCCCAAACTCCAAAGACCTTGTCATCGCAGGGTAACACAAGTCCCTTGAAG gtaggtggatgacagttcacacaggcagctgagcggctgtcccctcccagATGCCTTATTGGAGGAATTGGAACGCTGCACCTTTCAGGACAGTGAGGAATATTCAAATCCAGTTTCTTGTCACCAGGATCAGCAATTGACAGAAGAGAGCAAGATTCCCCAAACTCCAAAAACCTTGTCATTGCAGGGGAACACAAGTCCCTTGAAGgtgagtatgaaccaagttcacctatgtacctttagcaatttgtaatgttg Alignment from Spaln_nt2Genome ATGCCTTATTGGAGGAATTGGAACGCTGCACCTTTCAGGACAGTGAGGAATATTCAAATCCAGTTTCTTGTCACCTGGATCAGCAATCCACAGAGGAGAGCAAGATTCCCCAAACTCCAAAGACCTTGTCATCGCAGGGTAACACAAGTCCCTTGAAG gtaggtggatgacagttcacacaggcagctgagcggctgtcccctcccagATGCCTTATTGGAGGAATTGGAACGCTGCACCTTTCAGGACAGTGAGGAATATTCAAATCCAGTTTCTTGTCACCAGGATCAGCAATTGACAGAAGAGAGCAAGATTCCCCAAACTCCAAAAACCTTGTCATTGCAGGGGAACACAAGTCCCTTGAAGgtgagtatgaaccaagttcacctatgtacctttagcaatttgtaatgttg Alignment from Pairagon ATGCCTTATTGGAGGAATTGGAACGCTGCACCTTTCAGGACAGTGAGGAATATTCAAATCCAGTTTCTTGTCACCTGGATCAGCAATCCACAGAGGAGAGCAAGATTCCCCAAACTCCAAAGACCTTGTCATCGCAGGGTAACACAAGTCCCTTGAAG gtaggtggatgacagttcacacaggcagctgagcggctgtcccctcccagATGCCTTATTGGAGGAATTGGAACGCTGCACCTTTCAGGACAGTGAGGAATATTCAAATCCAGTTTCTTGTCACCAGGATCAGCAATTGACAGAAGAGAGCAAGATTCCCCAAACTCCAAAAACCTTGTCATTGCAGGGGAACACAAGTCCCTTGAAGgtgagtatgaaccaagttcacctatgtacctttagcaatttgtaatgttg Alignment from Exonerate_protein2genome GATGCCTTATTGGAGGAATTGGAACGCTGCACCTTTCAGGACAGTGAGGAATATTCAAATCCAGTTTCTTGTCACCTGGATCAGCAATCCACAGAGGAGAGCAAGATTCCCCAAACTCCAAAGACCTTGTCATCGCAGGGTAACACAAGTCCCTTGAAG gtaggtggatgacagttcacacaggcagctgagcggctgtcccctcccaGATGCCTTATTGGAGGAATTGGAACGCTGCACCTTTCAGGACAGTGAGGAATATTCAAATCCAGTTTCTTGTCACCAGGATCAGCAATTGACAGAAGAGAGCAAGATTCCCCAAACTCCAAAAACCTTGTCATTGCAGGGGAACACAAGTCCCTTGAAGgtgagtatgaaccaagttcacctatgtacctttagcaatttgtaatgttg Alignment from Exonerate_coding2genome GATGCCTTATTGGAGGAATTGGAACGCTGCACCTTTCAGGACAGTGAGGAATATTCAAATCCAGTTTCTTGTCACCTGGATCAGCAATCCACAGAGGAGAGCAAGATTCCCCAAACTCCAAAGACCTTGTCATCGCAGGGTAACACAAGTCCCTTGAAGGTGCAGCTCGTGTATGCAACCAATATCCAGGAGCCCAATGT gtaggtggatgacagttcacacaggcagctgagcggctgtcccctcccaGATGCCTTATTGGAGGAATTGGAACGCTGCACCTTTCAGGACAGTGAGGAATATTCAAATCCAGTTTCTTGTCACCAGGATCAGCAATTGACAGAAGAGAGCAAGATTCCCCAAACTCCAAAAACCTTGTCATTGCAGGGGAACACAAGTCCCTTGAAGGTGAGTATGAACCAAGTTCACCTATGTACCTTTAGCAATTTgtaatgttg Alignment from GeneWise GAAGAGCTGGATGCCTTATTGGAGGAATTGGAACGCTGCACCTTTCAGGACAGTGAGGAATATTCAAATCCAGTTTCTTGTCACCTGGATCAGCAATCCACAGAGGAGAGCAAGATTCCCCAAACTCCAAAGACCTTGTCATCGCAGGGTAACACAAGTCCCTTGAAG tgacagttcacacaggcagctgagcggctgtcccctccca---------GATGCCTTATTGGAGGAATTGGAACGCTGCACCTTTCAGGACAGTGAGGAATATTCAAATCCAGTTTCTTGTCACCAGGATCAGCAATTGACAGAAGAGAGCAAGATTCCCCAAACTCCAAAAACCTTGTCATTGCAGGGGAACACAAGTCCCTTGAAGgtgagtatgaaccaagttcacctatgtacctttagcaatttgtaatgttg #### Lpxn_ID3477_8 --> 2 - 0 Original Alignment gcTTTCATGAGAAGGACAAGAAGCCATACTGCCGAAAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGCCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTCTGGCACCCAGAGTGCTTTGTGTGTGGG ctatgccatactaaatagtgcggaataactgcttgttgttgtctgtgcaggcTTCCATGATAAGGACAAGGAACCATATTGCCTAGAGGATTTCTTGGCTATGCTCTCACCCAAATGTAGTGGCTGTAAGCATCCAGTTTTGGAAAACTATCTGTCAGCTATGAATACTGTT---TACCCAGAGTGCTTTGTGTGTGGGgtaagtatgttcactacccaggaatatgcattctctgtgaaaagactctt Alignment from CESAR gcTTTCATGAGAAGGACAAGAAGCCATACTGCCGAAAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGCCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTCTGGCACCCAGAGTGCTTTGTGTGTGGG ctatgccatactaaatagtgcggaataactgcttgttgttgtctgtgcaggcTTCCATGATAAGGACAAGGAACCATATTGCCTAGAGGATTTCTTGGCTATGCTCTCACCCAAATGTAGTGGCTGTAAGCATCCAGTTTTGGAAAACTATCTGTCAGCTATGAATACTGTT---TACCCAGAGTGCTTTGTGTGTGGGgtaagtatgttcactacccaggaatatgcattctctgtgaaaagactctt Alignment from Spaln_aa2Genome GCTTTCATGAGAAGGACAAGAAGCCATACTGCCGAAAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGCCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTCTGGCACCCAGAGTGCTTTGTGTGTGGG ctatgccatactaaatagtgcggaataactgcttgttgttgtctgtgcagGCTTCCATGATAAGGACAAGGAACCATATTGCCTAGAGGATTTCTTGGCTATGCTCTCACCCAAATGTAGTGGCTGTAAGCATCCAGTTTTGGAAAACTATCTGTCAGCTATGAATACTGTT---TACCCAGAGTGCTTTGTGTGTGGGgtaagtatgttcactacccaggaatatgcattctctgtgaaaagactctt Alignment from Spaln_nt2Genome GCTTTCATGAGAAGGACAAGAAGCCATACTGCCGAAAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGCCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTCTGGCACCCAGAGTGCTTTGTGTGTGGG ctatgccatactaaatagtgcggaataactgcttgttgttgtctgtgcagGCTTCCATGATAAGGACAAGGAACCATATTGCCTAGAGGATTTCTTGGCTATGCTCTCACCCAAATGTAGTGGCTGTAAGCATCCAGTTTTGGAAAACTATCTGTCAGCTATGAATACTGTTT---ACCCAGAGTGCTTTGTGTGTGGGgtaagtatgttcactacccaggaatatgcattctctgtgaaaagactctt Alignment from Pairagon GCTTTCATGAGAAGGACAAGAAGCCATACTGCCGAAAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGCCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTCTGGCACCCAGAGTGCTTTGTGTGTGGG ctatgccatactaaatagtgcggaataactgcttgttgttgtctgtgcagGCTTCCATGATAAGGACAAGGAACCATATTGCCTAGAGGATTTCTTGGCTATGCTCTCACCCAAATGTAGTGGCTGTAAGCATCCAGTTTTGGAAAACTATCTGTCAGCTATGAATACTGTTT---ACCCAGAGTGCTTTGTGTGTGGGgtaagtatgttcactacccaggaatatgcattctctgtgaaaagactctt Alignment from Exonerate_protein2genome GCTTTCATGAGAAGGACAAGAAGCCATACTGCCGAAAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGCCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTCTGGCACCCAGAGTGCTTTGTGTGTGGG ctatgccatactaaatagtgcggaataactgcttgttgttgtctgtgcagGCTTCCATGATAAGGACAAGGAACCATATTGCCTAGAGGATTTCTTGGCTATGCTCTCACCCAAATGTAGTGGCTGTAAGCATCCAGTTTTGGAAAACTATCTGTCAGCTATGAATACTGTT---TACCCAGAGTGCTTTGTGTGTGGGgtaagtatgttcactacccaggaatatgcattctctgtgaaaagactctt Alignment from Exonerate_coding2genome GCTTTCATGAGAAGGACAAGAAGCCATACTGCCGAAAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGCCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTCTGGCACCCAGAGTGCTTTGTGTGTGGG ctatgccatactaaatagtgcggaataactgcttgttgttgtctgtgcagGCTTCCATGATAAGGACAAGGAACCATATTGCCTAGAGGATTTCTTGGCTATGCTCTCACCCAAATGTAGTGGCTGTAAGCATCCAGTTTTGGAAAACTATCTGTCAGCTATGAATACTGTT---TACCCAGAGTGCTTTGTGTGTGGGgtaagtatgttcactacccaggaatatgcattctctgtgaaaagactctt Alignment from GeneWise GCTTTCATGAGAAGGACAAGAAGCCATACTGCCGAAAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGCCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTCTGGCACCCAGAGTGCTTTGTGTGTGGG ctatgccatactaaatagtgcggaataactgcttgttgttgtctgtgcagGCTTCCATGATAAGGACAAGGAACCATATTGCCTAGAGGATTTCTTGGCTATGCTCTCACCCAAATGTAGTGGCTGTAAGCATCCAGTTTTGGAAAACTATCTGTCAGCTATGAATACTGTTTAC---CCAGAGTGCTTTGTGTGTGGGgtaagtatgttcactacccaggaatatgcattctctgtgaaaagactctt #### Lrp5_ID113_11 --> 1 - 1 Original Alignment cTACATCTACTGGACTGAGTGGGGTGGCAAGCCAAGGATTGTGCGGGCCTTCATGGATGGGACCAATTGTATGACACTGGTAGACAAGGTGGGCCGGGCCAACGACCTCACCATTGATTATGCCGACCAGCGACTGTACTGGACTGACCTGGACACCAACATGATTGAGTCTTCCAACATGCTGg tatccttcaaatttatgagcctagagttatgtttttttctctctttctagcTACATTTACTGGAGTGAGTGGGGAGGCAAGCCAAGACTAGTC------TTCATGGATGGGGCCAACCGCATGACATTGGTAGATAAGGTTGGCCAGGCAAATGATCTAACTATTGATTATGCTGACCAGAGACTGTACTGGACTGGCTTGGACACCAACATGATTGATTCATCCAACATGTTAggtaagtcttactgttgttcctttgctcttgcttcctcgcttacaattctc Alignment from CESAR cTACATCTACTGGACTGAGTGGGGTGGCAAGCCAAGGATTGTGCGGGCCTTCATGGATGGGACCAATTGTATGACACTGGTAGACAAGGTGGGCCGGGCCAACGACCTCACCATTGATTATGCCGACCAGCGACTGTACTGGACTGACCTGGACACCAACATGATTGAGTCTTCCAACATGCTGg tatccttcaaatttatgagcctagagttatgtttttttctctctttctagcTACATTTACTGGAGTGAGTGGGGAGGCAAGCCAAGACTAGTC------TTCATGGATGGGGCCAACCGCATGACATTGGTAGATAAGGTTGGCCAGGCAAATGATCTAACTATTGATTATGCTGACCAGAGACTGTACTGGACTGGCTTGGACACCAACATGATTGATTCATCCAACATGTTAggtaagtcttactgttgttcctttgctcttgcttcctcgcttacaattctc Alignment from Spaln_aa2Genome CTACATCTACTGGACTGAGTGGGGTGGCAAGCCAAGGATTGTGCGGGCCTTCATGGATGGGACCAATTGTATGACACTGGTAGACAAGGTGGGCCGGGCCAACGACCTCACCATTGATTATGCCGACCAGCGACTGTACTGGACTGACCTGGACACCAACATGATTGAGTCTTCCAACATGCTGG tatccttcaaatttatgagcctagagttatgtttttttctctctttctagCTACATTTACTGGAGTGAGTGGGGAGGCAAGCCAAGACTAGTC------TTCATGGATGGGGCCAACCGCATGACATTGGTAGATAAGGTTGGCCAGGCAAATGATCTAACTATTGATTATGCTGACCAGAGACTGTACTGGACTGGCTTGGACACCAACATGATTGATTCATCCAACATGTTAGgtaagtcttactgttgttcctttgctcttgcttcctcgcttacaattctc Alignment from Spaln_nt2Genome CTACATCTACTGGACTGAGTGGGGTGGCAAGCCAAGGATTGTGCGGGCCTTCATGGATGGGACCAATTGTATGACACTGGTAGACAAGGTGGGCCGGGCCAACGACCTCACCATTGATTATGCCGACCAGCGACTGTACTGGACTGACCTGGACACCAACATGATTGAGTCTTCCAACATGCTGG tatccttcaaatttatgagcctagagttatgtttttttctctctttctagCTACATTTACTGGAGTGAGTGGGGAGGCAAGCCAAGACTAGT------CTTCATGGATGGGGCCAACCGCATGACATTGGTAGATAAGGTTGGCCAGGCAAATGATCTAACTATTGATTATGCTGACCAGAGACTGTACTGGACTGGCTTGGACACCAACATGATTGATTCATCCAACATGTTAGgtaagtcttactgttgttcctttgctcttgcttcctcgcttacaattctc Alignment from Pairagon CTACATCTACTGGACTGAGTGGGGTGGCAAGCCAAGGATTGTGCGGGCCTTCATGGATGGGACCAATTGTATGACACTGGTAGACAAGGTGGGCCGGGCCAACGACCTCACCATTGATTATGCCGACCAGCGACTGTACTGGACTGACCTGGACACCAACATGATTGAGTCTTCCAACATGCTGG tatccttcaaatttatgagcctagagttatgtttttttctctctttctagCTACATTTACTGGAGTGAGTGGGGAGGCAAGCCAAGACTAGT------CTTCATGGATGGGGCCAACCGCATGACATTGGTAGATAAGGTTGGCCAGGCAAATGATCTAACTATTGATTATGCTGACCAGAGACTGTACTGGACTGGCTTGGACACCAACATGATTGATTCATCCAACATGTTAGgtaagtcttactgttgttcctttgctcttgcttcctcgcttacaattctc Alignment from Exonerate_protein2genome CTACATCTACTGGACTGAGTGGGGTGGCAAGCCAAGGATTGTGCGGGCCTTCATGGATGGGACCAATTGTATGACACTGGTAGACAAGGTGGGCCGGGCCAACGACCTCACCATTGATTATGCCGACCAGCGACTGTACTGGACTGACCTGGACACCAACATGATTGAGTCTTCCAACATGCTGG tatccttcaaatttatgagcctagagttatgtttttttctctctttctagCTACATTTACTGGAGTGAGTGGGGAGGCAAGCCAAGACTAGTC------TTCATGGATGGGGCCAACCGCATGACATTGGTAGATAAGGTTGGCCAGGCAAATGATCTAACTATTGATTATGCTGACCAGAGACTGTACTGGACTGGCTTGGACACCAACATGATTGATTCATCCAACATGTTAGgtaagtcttactgttgttcctttgctcttgcttcctcgcttacaattctc Alignment from Exonerate_coding2genome CTACATCTACTGGACTGAGTGGGGTGGCAAGCCAAGGATTGTGCGGGCCTTCATGGATGGGACCAATTGTATGACACTGGTAGACAAGGTGGGCCGGGCCAACGACCTCACCATTGATTATGCCGACCAGCGACTGTACTGGACTGACCTGGACACCAACATGATTGAGTCTTCCAACATGCTGG tatccttcaaatttatgagcctagagttatgtttttttctctctttctagCTACATTTACTGGAGTGAGTGGGGAGGCAAGCCAAGACTAGTC------TTCATGGATGGGGCCAACCGCATGACATTGGTAGATAAGGTTGGCCAGGCAAATGATCTAACTATTGATTATGCTGACCAGAGACTGTACTGGACTGGCTTGGACACCAACATGATTGATTCATCCAACATGTTAGgtaagtcttactgttgttcctttgctcttgcttcctcgcttacaattctc Alignment from GeneWise CTACATCTACTGGACTGAGTGGGGTGGCAAGCCAAGGATTGTGCGGGCCTTCATGGATGGGACCAATTGTATGACACTGGTAGACAAGGTGGGCCGGGCCAACGACCTCACCATTGATTATGCCGACCAGCGACTGTACTGGACTGACCTGGACACCAACATGATTGAGTCTTCCAACATGCTGG tatccttcaaatttatgagcctagagttatgtttttttctctctttctagCTACATTTACTGGAGTGAGTGGGGAGGCAAGCCAAGACTAGTC------TTCATGGATGGGGCCAACCGCATGACATTGGTAGATAAGGTTGGCCAGGCAAATGATCTAACTATTGATTATGCTGACCAGAGACTGTACTGGACTGGCTTGGACACCAACATGATTGATTCATCCAACATGTTAGgtaagtcttactgttgttcctttgctcttgcttcctcgcttacaattctc #### Lrp5_ID114_10 --> 0 - 2 Original Alignment ACGATC------------AGCCGAGCCTTCATGAATGGGAGCTCAGTGGAGCACGTGATTGAGTTTGGCCTCGACTACCCTGAAGGAATGGCTGTGGACTGGATGGGCAAGAACCTCTATTGGGCGGACACAGGGACC---------------------------------------------------AACAGGATTGAGGTGGCCCGGCTGGATGGGCAGTTCCGGCAGGTGCTTGTGTGGAGAGACCTTGACAACCCCAGGTCTCTGGCTCTGGATCCT------ACTAAAgg gggcttgacaaatgctcaaggagcccttttaataatttttttttttgtagACAATTGCCCATGCCTTCAGCCATGCCTTTGCGAATGGGAGCTTGGTGGAACATGTGAGTGAGTTTGGTCTTGATTACCCG---GGGATGTCA---GATTGGATGGGCAAGAACCTGTATTGGGCAGACACAGAGACTGTGGATGGCCAAGGAGAGCATCTAGCAGGAGGTTGGAGTTACTCATATGTTAACAGGATTGAGGTAGCCCGACCGGATGGGCAG---------------------------------------CGATCACTAGCACTTGATCCAACTGAGGCAAAGgggtctgcgctctttgcttgttttatgatgcttgcctctcctggttctatag Alignment from CESAR ACGATC------------AGCCGAGCCTTCATGAATGGGAGCTCAGTGGAGCACGTGATTGAGTTTGGCCTCGACTACCCTGAAGGAATGGCTGTGGACTGGATGGGCAAGAACCTCTATTGGGCGGACACAGGGACC---------------------------------------------------AACAGGATTGAGGTGGCCCGGCTGGATGGGCAGTTCCGGCAGGTGCTTGTGTGGAGAGACCTTGACAACCCCAGGTCTCTGGCTCTGGATCCTACT------AAAgg gggcttgacaaatgctcaaggagcccttttaataatttttttttttgtagACAATTGCCCATGCCTTCAGCCATGCCTTTGCGAATGGGAGCTTGGTGGAACATGTGAGTGAGTTTGGTCTTGATTACCCG---GGGATGTCA---GATTGGATGGGCAAGAACCTGTATTGGGCAGACACAGAGACTGTGGATGGCCAAGGAGAGCATCTAGCAGGAGGTTGGAGTTACTCATATGTTAACAGGATTGAGGTAGCCCGACCGGATGGGCAG---------------------------------------CGATCACTAGCACTTGATCCAACTGAGGCAAAGgggtctgcgctctttgcttgttttatgatgcttgcctctcctggttctatag Alignment from Spaln_aa2Genome CCGAGCCTTCATGAATGGGAGCTCAGTGGAGCACGTGATTGAGTTTGGCCTCGACTACCCTGAAGGAATGGCTGTGGACTGGATGGGCAAGAACCTCTATTGGGCGGACACAGGGACCAACAGGATTGAGGTGGCCCGGCTGGATGGGCAGTTCCGGCAGGTGCTTGTGTGGAGA------------GACCTTGACAACCCCAGGTCTCTGGCTCTGGATCCTACT------AAAGG gggcttgacaaatgctcaaggagcccttttaataatttttttttttgtagacaattgcccatgccttcagCCATGCCTTTGCGAATGGGAGCTTGGTGGAACATGTGAGTGAGTTTGGTCTTGATTACCCG---GGGATGTCA---GATTGGATGGGCAAGAACCTGTATTGGGCAGACACAGAGACTGTGGATGGCCAAGGAGAGCATCTAGCAGGAGGTTGGAGTTACTCATATGTTAACAGGATTGAGGTAGCCCGACCGGATGGGCAGCGATCACTAGCACTTGATCCAACTGAGGCAAAGGGgtctgcgctctttgcttgttttatgatgcttgcctctcctggttctatag Alignment from Spaln_nt2Genome CCGAGCCTTCATGAATGGGAGCTCAGTGGAGCACGTGATTGAGTTTGGCCTCGACTACCCTGAAGGAATGGCTGTGGACTGGATGGGCAAGAACCTCTATTGGGCGGACACAGGGACCAACA--G GATTGAGGTGGCCCGGCTGGATGGGCAGTTCCGGCAGGTGCTTGTGTGGAGAGAC gggcttgacaaatgctcaaggagcccttttaataatttttttttttgtagacaattgcccatgccttcagCCATGCCTTTGCGAATGGGAGCTTGGTGGAACATGTGAGTGAGTTTGGTCTTGATTACCC---GGGGATGTC---AGATTGGATGGGCAAGAACCTGTATTGGGCAGACACAGAGACTGTGGATGgccaaggagagcatctagcaggaggttggagttactcatatgttaacagGATTGAGGTAGCCCGACCGGATGGGCAGCGATCACTAGCACTTGATCCAACTGAGgcaaaggggtctgcgctctttgcttgttttatgatgcttgcctctcctggttctatag Alignment from Pairagon ACGA------------TCAGCCGAGCCTTCATGAATGGGAGCTCAGTGGAGCACGTGATTGAGTTTGGCCTCGACTACCCTGAAGGAATGGCTGTG---------GACTGGATGGGCAAGAACCTCTATTGGGCGGACACAGGGAC---------------------------------------------------CAACAGGATTGAGGTGGCCCGGCTGGATGGGCA gggcttgacaaatgctcaaggagcccttttaataatttttttttttgtagACAATTGCCCATGCCTTCAGCCATGCCTTTGCGAATGGGAGCTTGGTGGAACATGTGAGTGAGTTTGGTCTTGATTACCC---------------GGGGATGTCAGATTGGATGGGCAAGAACCTGTATTGGGCAGACACAGAGACTGTGGATGGCCAAGGAGAGCATCTAGCAGGAGGTTGGAGTTACTCATATGTTAACAGGATTGAGGTAGCCCGACCGGATGGGCAgcgatcactagcacttgatccaactgaggcaaaggggtctgcgctctttgcttgttttatgatgcttgcctctcctggttctatag Alignment from Exonerate_protein2genome GTCAGCCTCAAGACGATCAGCCGAGCCTTCATGAATGGGAGCTCAGTGGAGCACGTGATTGAGTTTGGCCTCGACTACCCTGAAGGAATGGCTGTGGACTGGATGGGCAAGAACCTCTATTGGGCGGACACAGGGACCAACAGGATTGAGGTGGCCCGGCTGGATGGGCAGTTCCGGCAGGTGCTTGTGTGGAGA---GACCTTGACAACCCC---------AGGTCTCTGGCTCTGGATCCTACTAAAG gggcttgacaaatgctcaaggagcccttttaataatttttttttttgtagACAATTGCCCATGCCTTCAGCCATGCCTTTGCGAATGGGAGCTTGGTGGAACATGTGAGTGAGTTTGGTCTTGATTACCCG---GGGATGTCA---GATTGGATGGGCAAGAACCTGTATTGGGCAGACACAGAGACTGTGGATGGCCAAGGAGAGCATCTAGCAGGAGGTTGGAGTTACTCATATGTTAACAGGATTGAGGTAGCCCGACCGGATGGGCAGCGATCACTAGCACTTGATCCAACTGAGGcaaaggggtctgcgctctttgcttgttttatgatgcttgcctctcctggttctatag Alignment from Exonerate_coding2genome GTCAGCCTCAAGACGATCAGCCGAGCCTTCATGAATGGGAGCTCAGTGGAGCACGTGATTGAGTTTGGCCTCGACTACCCTGAAGGAATGGCTGTGGACTGGATGGGCAAGAACCTCTATTGGGCGGACACAGGGACCAACAGGATTGAGGTGGCCCGGCTGGATGGGCAGTTCCGGCAGGTGCTTGTGTGGAGA---GACCTTGACAACCCC---------AGGTCTCTGGCTCTGGATCCTACTAAAG gggcttgacaaatgctcaaggagcccttttaataatttttttttttgtagACAATTGCCCATGCCTTCAGCCATGCCTTTGCGAATGGGAGCTTGGTGGAACATGTGAGTGAGTTTGGTCTTGATTACCCG---GGGATGTCA---GATTGGATGGGCAAGAACCTGTATTGGGCAGACACAGAGACTGTGGATGGCCAAGGAGAGCATCTAGCAGGAGGTTGGAGTTACTCATATGTTAACAGGATTGAGGTAGCCCGACCGGATGGGCAGCGATCACTAGCACTTGATCCAACTGAGGcaaaggggtctgcgctctttgcttgttttatgatgcttgcctctcctggttctatag Alignment from GeneWise CCGAGCCTTCATGAATGGGAGCTCAGTGGAGCACGTGATTGAGTTTGGCCTCGACTACCCTGAAGGAATGGCTGTGGACTGGATGGGCAAGAACCTCTATTGGGCGGACACAGGGACCAACAGGATTGAGGTGGCCCGGCTGGATGGGCAGTTCCGGCAGGTGCTTGTGTGGAGA------------GACCTTGACAACCCCAGGTCTCTGGCTCTGGATCCTACT------AAAGG gggcttgacaaatgctcaaggagcccttttaataatttttttttttgtagacaattgcccatgccttcagCCATGCCTTTGCGAATGGGAGCTTGGTGGAACATGTGAGTGAGTTTGGTCTTGATTACCCG---GGGATGTCA---GATTGGATGGGCAAGAACCTGTATTGGGCAGACACAGAGACTGTGGATGGCCAAGGAGAGCATCTAGCAGGAGGTTGGAGTTACTCATATGTTAACAGGATTGAGGTAGCCCGACCGGATGGGCAGCGATCACTAGCACTTGATCCAACTGAGGCAAAGGGgtctgcgctctttgcttgttttatgatgcttgcctctcctggttctatag #### Lrp5_ID115_9 --> 2 - 0 Original Alignment gaACCAACCCATGTGCGGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCCACCAAGTGTGGCTGCCCCATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCCTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATCTCCCTGGAGACTAACAACAACGATGTGGCTATCCCACTCACGGGTGTCAAAGAGGCCTCTGCACTGGACTTTGATGTGTCCAACAATCACATCTACTGGACTGATGTCAGCCTCAAG cttaattggaaaccgttacttcatctttacattggtctctctgttgtcaggaACCAACCCATGTGCTGATGGGAATGGAGGGTGTAGTCATCTGTGCTTCTTCACCCCACATGCAACTAAGTGTGGCTGTCCTATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCAAAATACCTCAGGCTTTCCTGGTATTCTCCAGCAGAGCCACCATCCACAGGGTTTCCCTTGAAGCTAACAATATTGATGTGGCAATCCCACTTACAGGCGTCAAGGAGGCCTGTGCACTAGACTTTGAAGTATCCAACAATCACATCTACTGGACTGATGTTAGTTTCAAGgtgagttggtcataagtcttactgccttatatcaagccttgcctgtgcca Alignment from CESAR gaACCAACCCATGTGCGGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCCACCAAGTGTGGCTGCCCCATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCCTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATCTCCCTGGAGACTAACAACAACGATGTGGCTATCCCACTCACGGGTGTCAAAGAGGCCTCTGCACTGGACTTTGATGTGTCCAACAATCACATCTACTGGACTGATGTCAGCCTCAAG cttaattggaaaccgttacttcatctttacattggtctctctgttgtcaggaACCAACCCATGTGCTGATGGGAATGGAGGGTGTAGTCATCTGTGCTTCTTCACCCCACATGCAACTAAGTGTGGCTGTCCTATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCAAAATACCTCAGGCTTTCCTGGTATTCTCCAGCAGAGCCACCATCCACAGGGTTTCCCTTGAAGCTAACAATATTGATGTGGCAATCCCACTTACAGGCGTCAAGGAGGCCTGTGCACTAGACTTTGAAGTATCCAACAATCACATCTACTGGACTGATGTTAGTTTCAAGgtgagttggtcataagtcttactgccttatatcaagccttgcctgtgcca Alignment from Spaln_aa2Genome GAACCAACCCATGTGCGGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCCACCAAGTGTGGCTGCCCCATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCCTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATCTCCCTGGAGACTAACAACAACGATGTGGCTATCCCACTCACGGGTGTCAAAGAGGCCTCTGCACTGGACTTTGATGTGTCCAACAATCACATCTACTGGACTGATGTCAGCCTCAAGACGATCAG cttaattggaaaccgttacttcatctttacattggtctctctgttgtcagGAACCAACCCATGTGCTGATGGGAATGGAGGGTGTAGTCATCTGTGCTTCTTCACCCCACATGCAACTAAGTGTGGCTGTCCTATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCAAAATACCTCAGGCTTTCCTGGTATTCTCCAGCAGAGCCACCATCCACAGGGTTTCCCTTGAAGCTAACAATATTGATGTGGCAATCCCACTTACAGGCGTCAAGGAGGCCTGTGCACTAGACTTTGAAGTATCCAACAATCACATCTACTGGACTGATGTTAGTTTCAAGGTGAGTTGgtcataagtcttactgccttatatcaagccttgcctgtgcca Alignment from Spaln_nt2Genome GAACCAACCCATGTGCGGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCCACCAAGTGTGGCTGCCCCATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCCTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATCTCCCTGGAGACTAACAACAACGATGTGGCTATCCCACTCACGGGTGTCAAAGAGGCCTCTGCACTGGACTTTGATGTGTCCAACAATCACATCTACTGGACTGATGTCAGCCTCAAG cttaattggaaaccgttacttcatctttacattggtctctctgttgtcagGAACCAACCCATGTGCTGATGGGAATGGAGGGTGTAGTCATCTGTGCTTCTTCACCCCACATGCAACTAAGTGTGGCTGTCCTATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCAAAATACCTCAGGCTTTCCTGGTATTCTCCAGCAGAGCCACCATCCACAGGGTTTCCCTTGAAGCTAACAATATTGATGTGGCAATCCCACTTACAGGCGTCAAGGAGGCCTGTGCACTAGACTTTGAAGTATCCAACAATCACATCTACTGGACTGATGTTAGTTTCAAGgtgagttggtcataagtcttactgccttatatcaagccttgcctgtgcca Alignment from Pairagon GAACCAACCCATGTGCGGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCCACCAAGTGTGGCTGCCCCATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCCTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATCTCCCTGGAGACTAACAACAACGATGTGGCTATCCCACTCACGGGTGTCAAAGAGGCCTCTGCACTGGACTTTGATGTGTCCAACAATCACATCTACTGGACTGATGTCAGCCTCAAG cttaattggaaaccgttacttcatctttacattggtctctctgttgtcagGAACCAACCCATGTGCTGATGGGAATGGAGGGTGTAGTCATCTGTGCTTCTTCACCCCACATGCAACTAAGTGTGGCTGTCCTATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCAAAATACCTCAGGCTTTCCTGGTATTCTCCAGCAGAGCCACCATCCACAGGGTTTCCCTTGAAGCTAACAATATTGATGTGGCAATCCCACTTACAGGCGTCAAGGAGGCCTGTGCACTAGACTTTGAAGTATCCAACAATCACATCTACTGGACTGATGTTAGTTTCAAGgtgagttggtcataagtcttactgccttatatcaagccttgcctgtgcca Alignment from Exonerate_protein2genome GAACCAACCCATGTGCGGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCCACCAAGTGTGGCTGCCCCATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCCTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATCTCCCTGGAGACTAACAACAACGATGTGGCTATCCCACTCACGGGTGTCAAAGAGGCCTCTGCACTGGACTTTGATGTGTCCAACAATCACATCTACTGGACTGATGTCAGCCTCAAG cttaattggaaaccgttacttcatctttacattggtctctctgttgtcagGAACCAACCCATGTGCTGATGGGAATGGAGGGTGTAGTCATCTGTGCTTCTTCACCCCACATGCAACTAAGTGTGGCTGTCCTATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCAAAATACCTCAGGCTTTCCTGGTATTCTCCAGCAGAGCCACCATCCACAGGGTTTCCCTTGAAGCTAACAATATTGATGTGGCAATCCCACTTACAGGCGTCAAGGAGGCCTGTGCACTAGACTTTGAAGTATCCAACAATCACATCTACTGGACTGATGTTAGTTTCAAGgtgagttggtcataagtcttactgccttatatcaagccttgcctgtgcca Alignment from Exonerate_coding2genome GAACCAACCCATGTGCGGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCCACCAAGTGTGGCTGCCCCATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCCTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATCTCCCTGGAGACTAACAACAACGATGTGGCTATCCCACTCACGGGTGTCAAAGAGGCCTCTGCACTGGACTTTGATGTGTCCAACAATCACATCTACTGGACTGATGTCAGCCTCAAG cttaattggaaaccgttacttcatctttacattggtctctctgttgtcagGAACCAACCCATGTGCTGATGGGAATGGAGGGTGTAGTCATCTGTGCTTCTTCACCCCACATGCAACTAAGTGTGGCTGTCCTATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCAAAATACCTCAGGCTTTCCTGGTATTCTCCAGCAGAGCCACCATCCACAGGGTTTCCCTTGAAGCTAACAATATTGATGTGGCAATCCCACTTACAGGCGTCAAGGAGGCCTGTGCACTAGACTTTGAAGTATCCAACAATCACATCTACTGGACTGATGTTAGTTTCAAGgtgagttggtcataagtcttactgccttatatcaagccttgcctgtgcca Alignment from GeneWise GAACCAACCCATGTGCGGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCCACCAAGTGTGGCTGCCCCATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCCTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATCTCCCTGGAGACTAACAACAACGATGTGGCTATCCCACTCACGGGTGTCAAAGAGGCCTCTGCACTGGACTTTGATGTGTCCAACAATCACATCTACTGGACTGATGTCAGCCTCAAGACGATCAG cttaattggaaaccgttacttcatctttacattggtctctctgttgtcagGAACCAACCCATGTGCTGATGGGAATGGAGGGTGTAGTCATCTGTGCTTCTTCACCCCACATGCAACTAAGTGTGGCTGTCCTATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCAAAATACCTCAGGCTTTCCTGGTATTCTCCAGCAGAGCCACCATCCACAGGGTTTCCCTTGAAGCTAACAATATTGATGTGGCAATCCCACTTACAGGCGTCAAGGAGGCCTGTGCACTAGACTTTGAAGTATCCAACAATCACATCTACTGGACTGATGTTAGTTTCAAGGTGAGTTGgtcataagtcttactgccttatatcaagccttgcctgtgcca #### Lrp5_ID118_6 --> 2 - 2 Original Alignment ggGCTGAGGAAGTGCTGCTGCTGGCTCGGAGGACAGACCTGAGGAGGATCTCTCTGGACACCCCTGACTTCACAGACATAGTGCTGCAGGTGGGCGACATCCGGCATGCCATTGCCATTGACTACGATCCCCTGGAGGGCTACGTGTACTGGACCGACGATGAGGTGCGGGCTATCCGCAGGGCGTACCTAGATGGCTCAGGTGCGCAGACACTTGTGAACACTGAGATCAATGACCCCGATGGCATTGCTGTGGACTGGGTCGCCCGGAACCTCTACTGGACAGATACAGGCACTGACAGAATTGAGGTGACTCGCCTCAACGGCACCTCCCGAAAGATCCTGGTATCTGAGGACCTGGACGAACCGCGAGCCATTGTGTTGCACCCTGTGATGgg tacagaagcatgctctcatgctcttaacattgcattttctttcctttcaggtGCAGAGCAAGTGCTGCTGTTGGCCCGGAGGACAGACCTGAGGAGGATATCTCTGGATACTCCTGATTTCACAGACATAGTGCTGCAGGTGGGTGACATCCGGCATGCCATTGCTATTGACTATGAACCGTTGGAGGGCTATGTGTACTGGACTGATGATGAGGTGCGGGCTATCCGTAGGGCATACCTAGATGGCTCAGGAGCTCAAACTCTGGTGAACACTGAGATCAATGATCCTGATGGTATTGTGGTAGACTGGGTTGCCCGAAACCTCTATTGGACTGATACAGGCACAGACAGAATTGAGGTTACTCGTCTTAATGGAAACTCTCGAATGATCCTGGTACCTGAGGACCTTGATGAACCACGAGCCATTGTGTTGCATCCTGTGATGgggtgaggaggacaagaaaagttggacggcactggggttagtcactgtgact Alignment from CESAR ggGCTGAGGAAGTGCTGCTGCTGGCTCGGAGGACAGACCTGAGGAGGATCTCTCTGGACACCCCTGACTTCACAGACATAGTGCTGCAGGTGGGCGACATCCGGCATGCCATTGCCATTGACTACGATCCCCTGGAGGGCTACGTGTACTGGACCGACGATGAGGTGCGGGCTATCCGCAGGGCGTACCTAGATGGCTCAGGTGCGCAGACACTTGTGAACACTGAGATCAATGACCCCGATGGCATTGCTGTGGACTGGGTCGCCCGGAACCTCTACTGGACAGATACAGGCACTGACAGAATTGAGGTGACTCGCCTCAACGGCACCTCCCGAAAGATCCTGGTATCTGAGGACCTGGACGAACCGCGAGCCATTGTGTTGCACCCTGTGATGgg tacagaagcatgctctcatgctcttaacattgcattttctttcctttcaggtGCAGAGCAAGTGCTGCTGTTGGCCCGGAGGACAGACCTGAGGAGGATATCTCTGGATACTCCTGATTTCACAGACATAGTGCTGCAGGTGGGTGACATCCGGCATGCCATTGCTATTGACTATGAACCGTTGGAGGGCTATGTGTACTGGACTGATGATGAGGTGCGGGCTATCCGTAGGGCATACCTAGATGGCTCAGGAGCTCAAACTCTGGTGAACACTGAGATCAATGATCCTGATGGTATTGTGGTAGACTGGGTTGCCCGAAACCTCTATTGGACTGATACAGGCACAGACAGAATTGAGGTTACTCGTCTTAATGGAAACTCTCGAATGATCCTGGTACCTGAGGACCTTGATGAACCACGAGCCATTGTGTTGCATCCTGTGATGgggtgaggaggacaagaaaagttggacggcactggggttagtcactgtgact Alignment from Spaln_aa2Genome GGGCTGAGGAAGTGCTGCTGCTGGCTCGGAGGACAGACCTGAGGAGGATCTCTCTGGACACCCCTGACTTCACAGACATAGTGCTGCAGGTGGGCGACATCCGGCATGCCATTGCCATTGACTACGATCCCCTGGAGGGCTACGTGTACTGGACCGACGATGAGGTGCGGGCTATCCGCAGGGCGTACCTAGATGGCTCAGGTGCGCAGACACTTGTGAACACTGAGATCAATGACCCCGATGGCATTGCTGTGGACTGGGTCGCCCGGAACCTCTACTGGACAGATACAGGCACTGACAGAATTGAGGTGACTCGCCTCAACGGCACCTCCCGAAAGATCCTGGTATCTGAGGACCTGGACGAACCGCGAGCCATTGTGTTGCACCCTGTGATGGG tacagaagcatgctctcatgctcttaacattgcattttctttcctttcagGTGCAGAGCAAGTGCTGCTGTTGGCCCGGAGGACAGACCTGAGGAGGATATCTCTGGATACTCCTGATTTCACAGACATAGTGCTGCAGGTGGGTGACATCCGGCATGCCATTGCTATTGACTATGAACCGTTGGAGGGCTATGTGTACTGGACTGATGATGAGGTGCGGGCTATCCGTAGGGCATACCTAGATGGCTCAGGAGCTCAAACTCTGGTGAACACTGAGATCAATGATCCTGATGGTATTGTGGTAGACTGGGTTGCCCGAAACCTCTATTGGACTGATACAGGCACAGACAGAATTGAGGTTACTCGTCTTAATGGAAACTCTCGAATGATCCTGGTACCTGAGGACCTTGATGAACCACGAGCCATTGTGTTGCATCCTGTGATGGGgtgaggaggacaagaaaagttggacggcactggggttagtcactgtgact Alignment from Spaln_nt2Genome GGGCTGAGGAAGTGCTGCTGCTGGCTCGGAGGACAGACCTGAGGAGGATCTCTCTGGACACCCCTGACTTCACAGACATAGTGCTGCAGGTGGGCGACATCCGGCATGCCATTGCCATTGACTACGATCCCCTGGAGGGCTACGTGTACTGGACCGACGATGAGGTGCGGGCTATCCGCAGGGCGTACCTAGATGGCTCAGGTGCGCAGACACTTGTGAACACTGAGATCAATGACCCCGATGGCATTGCTGTGGACTGGGTCGCCCGGAACCTCTACTGGACAGATACAGGCACTGACAGAATTGAGGTGACTCGCCTCAACGGCACCTCCCGAAAGATCCTGGTATCTGAGGACCTGGACGAACCGCGAGCCATTGTGTTGCACCCTGTGATGGG tacagaagcatgctctcatgctcttaacattgcattttctttcctttcagGTGCAGAGCAAGTGCTGCTGTTGGCCCGGAGGACAGACCTGAGGAGGATATCTCTGGATACTCCTGATTTCACAGACATAGTGCTGCAGGTGGGTGACATCCGGCATGCCATTGCTATTGACTATGAACCGTTGGAGGGCTATGTGTACTGGACTGATGATGAGGTGCGGGCTATCCGTAGGGCATACCTAGATGGCTCAGGAGCTCAAACTCTGGTGAACACTGAGATCAATGATCCTGATGGTATTGTGGTAGACTGGGTTGCCCGAAACCTCTATTGGACTGATACAGGCACAGACAGAATTGAGGTTACTCGTCTTAATGGAAACTCTCGAATGATCCTGGTACCTGAGGACCTTGATGAACCACGAGCCATTGTGTTGCATCCTGTGATGGGgtgaggaggacaagaaaagttggacggcactggggttagtcactgtgact Alignment from Pairagon GGGCTGAGGAAGTGCTGCTGCTGGCTCGGAGGACAGACCTGAGGAGGATCTCTCTGGACACCCCTGACTTCACAGACATAGTGCTGCAGGTGGGCGACATCCGGCATGCCATTGCCATTGACTACGATCCCCTGGAGGGCTACGTGTACTGGACCGACGATGAGGTGCGGGCTATCCGCAGGGCGTACCTAGATGGCTCAGGTGCGCAGACACTTGTGAACACTGAGATCAATGACCCCGATGGCATTGCTGTGGACTGGGTCGCCCGGAACCTCTACTGGACAGATACAGGCACTGACAGAATTGAGGTGACTCGCCTCAACGGCACCTCCCGAAAGATCCTGGTATCTGAGGACCTGGACGAACCGCGAGCCATTGTGTTGCACCCTGTGATGGG tacagaagcatgctctcatgctcttaacattgcattttctttcctttcagGTGCAGAGCAAGTGCTGCTGTTGGCCCGGAGGACAGACCTGAGGAGGATATCTCTGGATACTCCTGATTTCACAGACATAGTGCTGCAGGTGGGTGACATCCGGCATGCCATTGCTATTGACTATGAACCGTTGGAGGGCTATGTGTACTGGACTGATGATGAGGTGCGGGCTATCCGTAGGGCATACCTAGATGGCTCAGGAGCTCAAACTCTGGTGAACACTGAGATCAATGATCCTGATGGTATTGTGGTAGACTGGGTTGCCCGAAACCTCTATTGGACTGATACAGGCACAGACAGAATTGAGGTTACTCGTCTTAATGGAAACTCTCGAATGATCCTGGTACCTGAGGACCTTGATGAACCACGAGCCATTGTGTTGCATCCTGTGATGGGgtgaggaggacaagaaaagttggacggcactggggttagtcactgtgact Alignment from Exonerate_protein2genome GGGCTGAGGAAGTGCTGCTGCTGGCTCGGAGGACAGACCTGAGGAGGATCTCTCTGGACACCCCTGACTTCACAGACATAGTGCTGCAGGTGGGCGACATCCGGCATGCCATTGCCATTGACTACGATCCCCTGGAGGGCTACGTGTACTGGACCGACGATGAGGTGCGGGCTATCCGCAGGGCGTACCTAGATGGCTCAGGTGCGCAGACACTTGTGAACACTGAGATCAATGACCCCGATGGCATTGCTGTGGACTGGGTCGCCCGGAACCTCTACTGGACAGATACAGGCACTGACAGAATTGAGGTGACTCGCCTCAACGGCACCTCCCGAAAGATCCTGGTATCTGAGGACCTGGACGAACCGCGAGCCATTGTGTTGCACCCTGTGATGGG tacagaagcatgctctcatgctcttaacattgcattttctttcctttcagGTGCAGAGCAAGTGCTGCTGTTGGCCCGGAGGACAGACCTGAGGAGGATATCTCTGGATACTCCTGATTTCACAGACATAGTGCTGCAGGTGGGTGACATCCGGCATGCCATTGCTATTGACTATGAACCGTTGGAGGGCTATGTGTACTGGACTGATGATGAGGTGCGGGCTATCCGTAGGGCATACCTAGATGGCTCAGGAGCTCAAACTCTGGTGAACACTGAGATCAATGATCCTGATGGTATTGTGGTAGACTGGGTTGCCCGAAACCTCTATTGGACTGATACAGGCACAGACAGAATTGAGGTTACTCGTCTTAATGGAAACTCTCGAATGATCCTGGTACCTGAGGACCTTGATGAACCACGAGCCATTGTGTTGCATCCTGTGATGGGgtgaggaggacaagaaaagttggacggcactggggttagtcactgtgact Alignment from Exonerate_coding2genome GGGCTGAGGAAGTGCTGCTGCTGGCTCGGAGGACAGACCTGAGGAGGATCTCTCTGGACACCCCTGACTTCACAGACATAGTGCTGCAGGTGGGCGACATCCGGCATGCCATTGCCATTGACTACGATCCCCTGGAGGGCTACGTGTACTGGACCGACGATGAGGTGCGGGCTATCCGCAGGGCGTACCTAGATGGCTCAGGTGCGCAGACACTTGTGAACACTGAGATCAATGACCCCGATGGCATTGCTGTGGACTGGGTCGCCCGGAACCTCTACTGGACAGATACAGGCACTGACAGAATTGAGGTGACTCGCCTCAACGGCACCTCCCGAAAGATCCTGGTATCTGAGGACCTGGACGAACCGCGAGCCATTGTGTTGCACCCTGTGATGGG tacagaagcatgctctcatgctcttaacattgcattttctttcctttcagGTGCAGAGCAAGTGCTGCTGTTGGCCCGGAGGACAGACCTGAGGAGGATATCTCTGGATACTCCTGATTTCACAGACATAGTGCTGCAGGTGGGTGACATCCGGCATGCCATTGCTATTGACTATGAACCGTTGGAGGGCTATGTGTACTGGACTGATGATGAGGTGCGGGCTATCCGTAGGGCATACCTAGATGGCTCAGGAGCTCAAACTCTGGTGAACACTGAGATCAATGATCCTGATGGTATTGTGGTAGACTGGGTTGCCCGAAACCTCTATTGGACTGATACAGGCACAGACAGAATTGAGGTTACTCGTCTTAATGGAAACTCTCGAATGATCCTGGTACCTGAGGACCTTGATGAACCACGAGCCATTGTGTTGCATCCTGTGATGGGgtgaggaggacaagaaaagttggacggcactggggttagtcactgtgact Alignment from GeneWise GGGCTGAGGAAGTGCTGCTGCTGGCTCGGAGGACAGACCTGAGGAGGATCTCTCTGGACACCCCTGACTTCACAGACATAGTGCTGCAGGTGGGCGACATCCGGCATGCCATTGCCATTGACTACGATCCCCTGGAGGGCTACGTGTACTGGACCGACGATGAGGTGCGGGCTATCCGCAGGGCGTACCTAGATGGCTCAGGTGCGCAGACACTTGTGAACACTGAGATCAATGACCCCGATGGCATTGCTGTGGACTGGGTCGCCCGGAACCTCTACTGGACAGATACAGGCACTGACAGAATTGAGGTGACTCGCCTCAACGGCACCTCCCGAAAGATCCTGGTATCTGAGGACCTGGACGAACCGCGAGCCATTGTGTTGCACCCTGTGATGGG tacagaagcatgctctcatgctcttaacattgcattttctttcctttcagGTGCAGAGCAAGTGCTGCTGTTGGCCCGGAGGACAGACCTGAGGAGGATATCTCTGGATACTCCTGATTTCACAGACATAGTGCTGCAGGTGGGTGACATCCGGCATGCCATTGCTATTGACTATGAACCGTTGGAGGGCTATGTGTACTGGACTGATGATGAGGTGCGGGCTATCCGTAGGGCATACCTAGATGGCTCAGGAGCTCAAACTCTGGTGAACACTGAGATCAATGATCCTGATGGTATTGTGGTAGACTGGGTTGCCCGAAACCTCTATTGGACTGATACAGGCACAGACAGAATTGAGGTTACTCGTCTTAATGGAAACTCTCGAATGATCCTGGTACCTGAGGACCTTGATGAACCACGAGCCATTGTGTTGCATCCTGTGATGGGgtgaggaggacaagaaaagttggacggcactggggttagtcactgtgact #### Lrp5_ID122_4 --> 1 - 1 Original Alignment gCAGAAGGTGGTGGAGGGCAGCCTCACTCACCCTTTTGCCCTGACACTCTCTGGGGACACACTCTACTGGACAGACTGGCAGACCCGCTCCATCCACGCCTGCAACAAGTGGACAGGGGAGCAGAGGAAGGAGATCCTTAGTGCTCTGTACTCACCCATGGACATCCAAGTGCTGAGCCAGGAGCGGCAGCCTCCCt tgtggtggccttaccccctgtctcagaactaccctgcccactgcccttagcCAGAAGGTAGTGGAGGGCAGCCTGACCCACCCTTTTCAACTGACCCTCTCAGGGGACACACTCTATTGGACAGATTGGCACACCCGTTCCATTCATGCCTGCAAG---TGGAAAGGAGAGCAGAGGAAGGAAATCCTTGGTGCTCTCTACTTACCAATAGATATTCAAGTGCTAAGTCAAGAGCGACAGCCTCCCtgtaagcggaacaaaccaaagggacatagttttgtaaggagggattgttgc Alignment from CESAR gCAGAAGGTGGTGGAGGGCAGCCTCACTCACCCTTTTGCCCTGACACTCTCTGGGGACACACTCTACTGGACAGACTGGCAGACCCGCTCCATCCACGCCTGCAACAAGTGGACAGGGGAGCAGAGGAAGGAGATCCTTAGTGCTCTGTACTCACCCATGGACATCCAAGTGCTGAGCCAGGAGCGGCAGCCTCCCt tgtggtggccttaccccctgtctcagaactaccctgcccactgcccttagcCAGAAGGTAGTGGAGGGCAGCCTGACCCACCCTTTTCAACTGACCCTCTCAGGGGACACACTCTATTGGACAGATTGGCACACCCGTTCCATTCATGCCTGC---AAGTGGAAAGGAGAGCAGAGGAAGGAAATCCTTGGTGCTCTCTACTTACCAATAGATATTCAAGTGCTAAGTCAAGAGCGACAGCCTCCCtgtaagcggaacaaaccaaagggacatagttttgtaaggagggattgttgc Alignment from Spaln_aa2Genome GCAGAAGGTGGTGGAGGGCAGCCTCACTCACCCTTTTGCCCTGACACTCTCTGGGGACACACTCTACTGGACAGACTGGCAGACCCGCTCCATCCACGCCTGCAACAAGTGGACAGGGGAGCAGAGGAAGGAGATCCTTAGTGCTCTGTACTCACCCATGGACATCCAAGTGCTGAGCCAGGAGCGGCAGCCTCCCT tgtggtggccttaccccctgtctcagaactaccctgcccactgcccttagCCAGAAGGTAGTGGAGGGCAGCCTGACCCACCCTTTTCAACTGACCCTCTCAGGGGACACACTCTATTGGACAGATTGGCACACCCGTTCCATTCATGCCTGC---AAGTGGAAAGGAGAGCAGAGGAAGGAAATCCTTGGTGCTCTCTACTTACCAATAGATATTCAAGTGCTAAGTCAAGAGCGACAGCCTCCCTgtaagcggaacaaaccaaagggacatagttttgtaaggagggattgttgc Alignment from Spaln_nt2Genome GCAGAAGGTGGTGGAGGGCAGCCTCACTCACCCTTTTGCCCTGACACTCTCTGGGGACACACTCTACTGGACAGACTGGCAGACCCGCTCCATCCACGCCTGCAACAAGTGGACAGGGGAGCAGAGGAAGGAGATCCTTAGTGCTCTGTACTCACCCATGGACATCCAAGTGCTGAGCCAGGAGCGGCAGCCTCCCT tgtggtggccttaccccctgtctcagaactaccctgcccactgcccttagCCAGAAGGTAGTGGAGGGCAGCCTGACCCACCCTTTTCAACTGACCCTCTCAGGGGACACACTCTATTGGACAGATTGGCACACCCGTTCCATTCATGCCTG---CAAGTGGAAAGGAGAGCAGAGGAAGGAAATCCTTGGTGCTCTCTACTTACCAATAGATATTCAAGTGCTAAGTCAAGAGCGACAGCCTCCCTgtaagcggaacaaaccaaagggacatagttttgtaaggagggattgttgc Alignment from Pairagon GCAGAAGGTGGTGGAGGGCAGCCTCACTCACCCTTTTGCCCTGACACTCTCTGGGGACACACTCTACTGGACAGACTGGCAGACCCGCTCCATCCACGCCTGCAACAAGTGGACAGGGGAGCAGAGGAAGGAGATCCTTAGTGCTCTGTACTCACCCATGGACATCCAAGTGCTGAGCCAGGAGCGGCAGCCTCCCT tgtggtggccttaccccctgtctcagaactaccctgcccactgcccttagCCAGAAGGTAGTGGAGGGCAGCCTGACCCACCCTTTTCAACTGACCCTCTCAGGGGACACACTCTATTGGACAGATTGGCACACCCGTTCCATTCATGCCTG---CAAGTGGAAAGGAGAGCAGAGGAAGGAAATCCTTGGTGCTCTCTACTTACCAATAGATATTCAAGTGCTAAGTCAAGAGCGACAGCCTCCCTgtaagcggaacaaaccaaagggacatagttttgtaaggagggattgttgc Alignment from Exonerate_protein2genome GCAGAAGGTGGTGGAGGGCAGCCTCACTCACCCTTTTGCCCTGACACTCTCTGGGGACACACTCTACTGGACAGACTGGCAGACCCGCTCCATCCACGCCTGCAACAAGTGGACAGGGGAGCAGAGGAAGGAGATCCTTAGTGCTCTGTACTCACCCATGGACATCCAAGTGCTGAGCCAGGAGCGGCAGCCTCCCT tgtggtggccttaccccctgtctcagaactaccctgcccactgcccttagCCAGAAGGTAGTGGAGGGCAGCCTGACCCACCCTTTTCAACTGACCCTCTCAGGGGACACACTCTATTGGACAGATTGGCACACCCGTTCCATTCATGCCTGC---AAGTGGAAAGGAGAGCAGAGGAAGGAAATCCTTGGTGCTCTCTACTTACCAATAGATATTCAAGTGCTAAGTCAAGAGCGACAGCCTCCCTgtaagcggaacaaaccaaagggacatagttttgtaaggagggattgttgc Alignment from Exonerate_coding2genome GCAGAAGGTGGTGGAGGGCAGCCTCACTCACCCTTTTGCCCTGACACTCTCTGGGGACACACTCTACTGGACAGACTGGCAGACCCGCTCCATCCACGCCTGCAACAAGTGGACAGGGGAGCAGAGGAAGGAGATCCTTAGTGCTCTGTACTCACCCATGGACATCCAAGTGCTGAGCCAGGAGCGGCAGCCTCCCT tgtggtggccttaccccctgtctcagaactaccctgcccactgcccttagCCAGAAGGTAGTGGAGGGCAGCCTGACCCACCCTTTTCAACTGACCCTCTCAGGGGACACACTCTATTGGACAGATTGGCACACCCGTTCCATTCATGCCTGC---AAGTGGAAAGGAGAGCAGAGGAAGGAAATCCTTGGTGCTCTCTACTTACCAATAGATATTCAAGTGCTAAGTCAAGAGCGACAGCCTCCCTgtaagcggaacaaaccaaagggacatagttttgtaaggagggattgttgc Alignment from GeneWise GCAGAAGGTGGTGGAGGGCAGCCTCACTCACCCTTTTGCCCTGACACTCTCTGGGGACACACTCTACTGGACAGACTGGCAGACCCGCTCCATCCACGCCTGCAACAAGTGGACAGGGGAGCAGAGGAAGGAGATCCTTAGTGCTCTGTACTCACCCATGGACATCCAAGTGCTGAGCCAGGAGCGGCAGCCTCCCT tgtggtggccttaccccctgtctcagaactaccctgcccactgcccttagCCAGAAGGTAGTGGAGGGCAGCCTGACCCACCCTTTTCAACTGACCCTCTCAGGGGACACACTCTATTGGACAGATTGGCACACCCGTTCCATTCATGCCTGC---AAGTGGAAAGGAGAGCAGAGGAAGGAAATCCTTGGTGCTCTCTACTTACCAATAGATATTCAAGTGCTAAGTCAAGAGCGACAGCCTCCCTgtaagcggaacaaaccaaagggacatagttttgtaaggagggattgttgc #### Lrp5_ID123_3 --> 1 - 2 Original Alignment gTACATGTACTGGACTGACTGGGGGGAAGCACCCCGGATCGAGCGGGCAGGGATGGATGGCAGTACCCGGAAGATCATTGTAGACTCCGACATTTACTGGCCCAATGGGCTGACCATCGACCTGGAGGAACAGAAGCTGTACTGGGCCGATGCCAAGCTCAGCTTCATCCACCGTGCCAACCTGGACGGCTCCTTCcg attattactcctccccctgaatgtctctaactgtttattattgtatccaggTATATGTACTGGACTGACTGGGGGGAAGCACCCCGGATTAAGCGGGCAGGGATGGATGGCTGCACACGGAAAATCCTTGTAGACTATGATATTTACTGGCCAAATGGGGTGACCATAGACCTTGAGGAGCAGAAGCTGTATTGGACTGATGCCCAGCTCAGCTTCATCCACCGTGCTAAACTTGATGGCTCCTTTcggtgagagtctggtggatggggcaattgcatgaaatcccagagccatctct Alignment from CESAR gTACATGTACTGGACTGACTGGGGGGAAGCACCCCGGATCGAGCGGGCAGGGATGGATGGCAGTACCCGGAAGATCATTGTAGACTCCGACATTTACTGGCCCAATGGGCTGACCATCGACCTGGAGGAACAGAAGCTGTACTGGGCCGATGCCAAGCTCAGCTTCATCCACCGTGCCAACCTGGACGGCTCCTTCcg attattactcctccccctgaatgtctctaactgtttattattgtatccaggTATATGTACTGGACTGACTGGGGGGAAGCACCCCGGATTAAGCGGGCAGGGATGGATGGCTGCACACGGAAAATCCTTGTAGACTATGATATTTACTGGCCAAATGGGGTGACCATAGACCTTGAGGAGCAGAAGCTGTATTGGACTGATGCCCAGCTCAGCTTCATCCACCGTGCTAAACTTGATGGCTCCTTTcggtgagagtctggtggatggggcaattgcatgaaatcccagagccatctct Alignment from Spaln_aa2Genome GTACATGTACTGGACTGACTGGGGGGAAGCACCCCGGATCGAGCGGGCAGGGATGGATGGCAGTACCCGGAAGATCATTGTAGACTCCGACATTTACTGGCCCAATGGGCTGACCATCGACCTGGAGGAACAGAAGCTGTACTGGGCCGATGCCAAGCTCAGCTTCATCCACCGTGCCAACCTGGACGGCTCCTTCCG attattactcctccccctgaatgtctctaactgtttattattgtatccagGTATATGTACTGGACTGACTGGGGGGAAGCACCCCGGATTAAGCGGGCAGGGATGGATGGCTGCACACGGAAAATCCTTGTAGACTATGATATTTACTGGCCAAATGGGGTGACCATAGACCTTGAGGAGCAGAAGCTGTATTGGACTGATGCCCAGCTCAGCTTCATCCACCGTGCTAAACTTGATGGCTCCTTTCGgtgagagtctggtggatggggcaattgcatgaaatcccagagccatctct Alignment from Spaln_nt2Genome GTACATGTACTGGACTGACTGGGGGGAAGCACCCCGGATCGAGCGGGCAGGGATGGATGGCAGTACCCGGAAGATCATTGTAGACTCCGACATTTACTGGCCCAATGGGCTGACCATCGACCTGGAGGAACAGAAGCTGTACTGGGCCGATGCCAAGCTCAGCTTCATCCACCGTGCCAACCTGGACGGCTCCTTCCG attattactcctccccctgaatgtctctaactgtttattattgtatccagGTATATGTACTGGACTGACTGGGGGGAAGCACCCCGGATTAAGCGGGCAGGGATGGATGGCTGCACACGGAAAATCCTTGTAGACTATGATATTTACTGGCCAAATGGGGTGACCATAGACCTTGAGGAGCAGAAGCTGTATTGGACTGATGCCCAGCTCAGCTTCATCCACCGTGCTAAACTTGATGGCTCCTTTCGgtgagagtctggtggatggggcaattgcatgaaatcccagagccatctct Alignment from Pairagon GTACATGTACTGGACTGACTGGGGGGAAGCACCCCGGATCGAGCGGGCAGGGATGGATGGCAGTACCCGGAAGATCATTGTAGACTCCGACATTTACTGGCCCAATGGGCTGACCATCGACCTGGAGGAACAGAAGCTGTACTGGGCCGATGCCAAGCTCAGCTTCATCCACCGTGCCAACCTGGACGGCTCCTTCCG attattactcctccccctgaatgtctctaactgtttattattgtatccagGTATATGTACTGGACTGACTGGGGGGAAGCACCCCGGATTAAGCGGGCAGGGATGGATGGCTGCACACGGAAAATCCTTGTAGACTATGATATTTACTGGCCAAATGGGGTGACCATAGACCTTGAGGAGCAGAAGCTGTATTGGACTGATGCCCAGCTCAGCTTCATCCACCGTGCTAAACTTGATGGCTCCTTTCGgtgagagtctggtggatggggcaattgcatgaaatcccagagccatctct Alignment from Exonerate_protein2genome GTACATGTACTGGACTGACTGGGGGGAAGCACCCCGGATCGAGCGGGCAGGGATGGATGGCAGTACCCGGAAGATCATTGTAGACTCCGACATTTACTGGCCCAATGGGCTGACCATCGACCTGGAGGAACAGAAGCTGTACTGGGCCGATGCCAAGCTCAGCTTCATCCACCGTGCCAACCTGGACGGCTCCTTCCG attattactcctccccctgaatgtctctaactgtttattattgtatccagGTATATGTACTGGACTGACTGGGGGGAAGCACCCCGGATTAAGCGGGCAGGGATGGATGGCTGCACACGGAAAATCCTTGTAGACTATGATATTTACTGGCCAAATGGGGTGACCATAGACCTTGAGGAGCAGAAGCTGTATTGGACTGATGCCCAGCTCAGCTTCATCCACCGTGCTAAACTTGATGGCTCCTTTCGgtgagagtctggtggatggggcaattgcatgaaatcccagagccatctct Alignment from Exonerate_coding2genome GTACATGTACTGGACTGACTGGGGGGAAGCACCCCGGATCGAGCGGGCAGGGATGGATGGCAGTACCCGGAAGATCATTGTAGACTCCGACATTTACTGGCCCAATGGGCTGACCATCGACCTGGAGGAACAGAAGCTGTACTGGGCCGATGCCAAGCTCAGCTTCATCCACCGTGCCAACCTGGACGGCTCCTTCCG attattactcctccccctgaatgtctctaactgtttattattgtatccagGTATATGTACTGGACTGACTGGGGGGAAGCACCCCGGATTAAGCGGGCAGGGATGGATGGCTGCACACGGAAAATCCTTGTAGACTATGATATTTACTGGCCAAATGGGGTGACCATAGACCTTGAGGAGCAGAAGCTGTATTGGACTGATGCCCAGCTCAGCTTCATCCACCGTGCTAAACTTGATGGCTCCTTTCGgtgagagtctggtggatggggcaattgcatgaaatcccagagccatctct Alignment from GeneWise GTACATGTACTGGACTGACTGGGGGGAAGCACCCCGGATCGAGCGGGCAGGGATGGATGGCAGTACCCGGAAGATCATTGTAGACTCCGACATTTACTGGCCCAATGGGCTGACCATCGACCTGGAGGAACAGAAGCTGTACTGGGCCGATGCCAAGCTCAGCTTCATCCACCGTGCCAACCTGGACGGCTCCTTCCG attattactcctccccctgaatgtctctaactgtttattattgtatccagGTATATGTACTGGACTGACTGGGGGGAAGCACCCCGGATTAAGCGGGCAGGGATGGATGGCTGCACACGGAAAATCCTTGTAGACTATGATATTTACTGGCCAAATGGGGTGACCATAGACCTTGAGGAGCAGAAGCTGTATTGGACTGATGCCCAGCTCAGCTTCATCCACCGTGCTAAACTTGATGGCTCCTTTCGgtgagagtctggtggatggggcaattgcatgaaatcccagagccatctct #### Ltbp3_ID1254_6 --> 2 - 1 Original Alignment atATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTg gctgaaaaagcatttccttcctcaagtggtcacttttccttttcattcagacATAAATGAATGTGTGATGCCTGGGATGTGTCGTCATGGGGATTGTCTGACCAACCCCGGCTCTTATCACTGTGTCTGCCCACCTGGTCATAGCTTAGGTCCTTTCCGCAAACAGTGTATAggtaatgtcaagaacaattttggattagctaaagggaagcaaaaggggaga Alignment from CESAR atATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTg gctgaaaaagcatttccttcctcaagtggtcacttttccttttcattcagacATAAATGAATGTGTGATGCCTGGGATGTGTCGTCATGGGGATTGTCTGACCAACCCCGGCTCTTATCACTGTGTCTGCCCACCTGGTCATAGCTTAGGTCCTTTCCGCAAACAGTGTATAggtaatgtcaagaacaattttggattagctaaagggaagcaaaaggggaga Alignment from Spaln_aa2Genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gctgaaaaagcatttccttcctcaagtggtcacttttccttttcattcagACATAAATGAATGTGTGATGCCTGGGATGTGTCGTCATGGGGATTGTCTGACCAACCCCGGCTCTTATCACTGTGTCTGCCCACCTGGTCATAGCTTAGGTCCTTTCCGCAAACAGTGTATAGgtaatgtcaagaacaattttggattagctaaagggaagcaaaaggggaga Alignment from Spaln_nt2Genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gctgaaaaagcatttccttcctcaagtggtcacttttccttttcattcagACATAAATGAATGTGTGATGCCTGGGATGTGTCGTCATGGGGATTGTCTGACCAACCCCGGCTCTTATCACTGTGTCTGCCCACCTGGTCATAGCTTAGGTCCTTTCCGCAAACAGTGTATAGgtaatgtcaagaacaattttggattagctaaagggaagcaaaaggggaga Alignment from Pairagon ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gctgaaaaagcatttccttcctcaagtggtcacttttccttttcattcagACATAAATGAATGTGTGATGCCTGGGATGTGTCGTCATGGGGATTGTCTGACCAACCCCGGCTCTTATCACTGTGTCTGCCCACCTGGTCATAGCTTAGGTCCTTTCCGCAAACAGTGTATAGgtaatgtcaagaacaattttggattagctaaagggaagcaaaaggggaga Alignment from Exonerate_protein2genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gctgaaaaagcatttccttcctcaagtggtcacttttccttttcattcagACATAAATGAATGTGTGATGCCTGGGATGTGTCGTCATGGGGATTGTCTGACCAACCCCGGCTCTTATCACTGTGTCTGCCCACCTGGTCATAGCTTAGGTCCTTTCCGCAAACAGTGTATAGgtaatgtcaagaacaattttggattagctaaagggaagcaaaaggggaga Alignment from Exonerate_coding2genome gctgaaaaagcatttccttcctcaagtggtcacttttccttttcattcagacataaatgaatgtgtgatgcctgggatgtgtcgtcatggggattgtctgaccaaccccggctcttatcactgtgtctgcccacctggtcatagcttaggtcctttccgcaaacagtgtataggtaatgtcaagaacaattttggattagctaaagggaagcaaaaggggaga Alignment from GeneWise ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gctgaaaaagcatttccttcctcaagtggtcacttttccttttcattcagACATAAATGAATGTGTGATGCCTGGGATGTGTCGTCATGGGGATTGTCTGACCAACCCCGGCTCTTATCACTGTGTCTGCCCACCTGGTCATAGCTTAGGTCCTTTCCGCAAACAGTGTATAGgtaatgtcaagaacaattttggattagctaaagggaagcaaaaggggaga #### Ltbp3_ID1257_9 --> 2 - 0 Original Alignment gaGTGACCATGGATCCA cctggtctcctttgctttttacgtataagcgctctcgcatgtcccctcaggaGTGACCATGGACCCAgtgagaaaggtagcaccaccaaatggaagggggaacagcagtatgacagc Alignment from CESAR gaGTGACCATGGATCCA cctggtctcctttgctttttacgtataagcgctctcgcatgtcccctcaggaGTGACCATGGACCCAgtgagaaaggtagcaccaccaaatggaagggggaacagcagtatgacagc Alignment from Spaln_aa2Genome GAGTGACCATGGATCCA cctggtctcctttgctttttacgtataagcgctctcgcatgtcccctcagGAGTGACCATGGACCCAgtgagaaaggtagcaccaccaaatggaagggggaacagcagtatgacagc Alignment from Spaln_nt2Genome GAGTGACCATGGATCCA cctggtctcctttgctttttacgtataagcgctctcgcatgtcccctcagGAGTGACCATGGACCCAgtgagaaaggtagcaccaccaaatggaagggggaacagcagtatgacagc Alignment from Pairagon GAGTGACCATGGATCCA cctggtctcctttgctttttacgtataagcgctctcgcatgtcccctcagGAGTGACCATGGACCCAgtgagaaaggtagcaccaccaaatggaagggggaacagcagtatgacagc Alignment from Exonerate_protein2genome GAGTGACCATGGATCCA cctggtctcctttgctttttacgtataagcgctctcgcatgtcccctcagGAGTGACCATGGACCCAgtgagaaaggtagcaccaccaaatggaagggggaacagcagtatgacagc Alignment from Exonerate_coding2genome cctggtctcctttgctttttacgtataagcgctctcgcatgtcccctcaggagtgaccatggacccagtgagaaaggtagcaccaccaaatggaagggggaacagcagtatgacagc Alignment from GeneWise cctggtctcctttgctttttacgtataagcgctctcgcatgtcccctcaggagtgaccatggacccagtgagaaaggtagcaccaccaaatggaagggggaacagcagtatgacagc #### Ltbp3_ID1259_11 --> 2 - 1 Original Alignment agCTCATCTCTCGCCCCTCCCCACCTACCTTCCACCGGTTCCTGCCAGACTTGCCCCCATCCCGAAGTGCAGTGGAGATCGCCCCCACTCAGGTCACAg tgtagcccgctttggtacttcattctctttctcccctctttatttcatagggCTTGTCTCTTGCCCTATCCCACCTTCTTTCCACAGGTCTCTGCCAGACTTACCCCAACCTAGAAGA------GAAATTGCACTCACTCAGGTTATTggtgaggtctgtggtcagagccacagtcatgatattctgtacactcagttt Alignment from CESAR agCTCATCTCTCGCCCCTCCCCACCTACCTTCCACCGGTTCCTGCCAGACTTGCCCCCATCCCGAAGTGCAGTGGAGATCGCCCCCACTCAGGTCACAg tgtagcccgctttggtacttcattctctttctcccctctttatttcatagggCTTGTCTCTTGCCCTATCCCACCTTCTTTCCACAGGTCTCTGCCAGACTTACCCCAACCTAGAAGA------GAAATTGCACTCACTCAGGTTATTggtgaggtctgtggtcagagccacagtcatgatattctgtacactcagttt Alignment from Spaln_aa2Genome AGCTCATCTCTCGCCCCTCCCCACCTACCTTCCACCGGTTCCTGCCAGACTTGCCCCCATCCCGAAGTGCAGTGGAGATCGCCCCCACTCAGGTCACAG tgtagcccgctttggtacttcattctctttctcccctctttatttcatagGGCTTGTCTCTTGCCCTATCCCACCTTCTTTCCACAGGTCTCTGCCAGACTTACCCCAACCTAGAAGA------GAAATTGCACTCACTCAGGTTATTGgtgaggtctgtggtcagagccacagtcatgatattctgtacactcagttt Alignment from Spaln_nt2Genome AGCTCATCTCTCGCCCCTCCCCACCTACCTTCCACCGGTTCCTGCCAGACTTGCCCCCATCCCGAAGTGCAGTGGAGATCGCCCCCACTCAGGTCACAG tgtagcccgctttggtacttcattctctttctcccctctttatttcatagGGCTTGTCTCTTGCCCTATCCCACCTTCTTTCCACAGGTCTCTGCCAGACTTACCCCAACCTAGAAG------AGAAATTGCACTCACTCAGGTTATTGgtgaggtctgtggtcagagccacagtcatgatattctgtacactcagttt Alignment from Pairagon AGCTCATCTCTCGCCCCTCCCCACCTACCTTCCACCGGTTCCTGCCAGACTTGCCCCCATCCCGAAGTGCAGTGGAGATCGCCCCCACTCAGGTCACAG tgtagcccgctttggtacttcattctctttctcccctctttatttcatagGGCTTGTCTCTTGCCCTATCCCACCTTCTTTCCACAGGTCTCTGCCAGACTTACCCCAACCTAGAAG------AGAAATTGCACTCACTCAGGTTATTGgtgaggtctgtggtcagagccacagtcatgatattctgtacactcagttt Alignment from Exonerate_protein2genome AGCTCATCTCTCGCCCCTCCCCACCTACCTTCCACCGGTTCCTGCCAGACTTGCCCCCATCCCGAAGTGCAGTGGAGATCGCCCCCACTCAGGTCACAG tgtagcccgctttggtacttcattctctttctcccctctttatttcatagGGCTTGTCTCTTGCCCTATCCCACCTTCTTTCCACAGGTCTCTGCCAGACTTACCCCAACCTAGAAGA------GAAATTGCACTCACTCAGGTTATTGgtgaggtctgtggtcagagccacagtcatgatattctgtacactcagttt Alignment from Exonerate_coding2genome tgtagcccgctttggtacttcattctctttctcccctctttatttcatagggcttgtctcttgccctatcccaccttctttccacaggtctctgccagacttaccccaacctagaagagaaattgcactcactcaggttattggtgaggtctgtggtcagagccacagtcatgatattctgtacactcagttt Alignment from GeneWise AGCTCATCTCTCGCCCCTCCCCACCTACCTTCCACCGGTTCCTGCCAGACTTGCCCCCATCCCGAAGTGCAGTGGAGATCGCCCCCACTCAGGTCACAG tgtagcccgctttggtacttcattctctttctcccctctttatttcatagGGCTTGTCTCTTGCCCTATCCCACCTTCTTTCCACAGGTCTCTGCCAGACTTACCCCAACCTAGAAGA------GAAATTGCACTCACTCAGGTTATTGgtgaggtctgtggtcagagccacagtcatgatattctgtacactcagttt #### Ltbp3_ID1262_14 --> 2 - 1 Original Alignment acCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAg atttctgaccccagcccctccccttcctcctttgccactgtctcccgcagatCTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAACTTCCCAGGCCACTACACATGCAACTGTTATCCTGGTTACAGGCTCAAGGCCTCCAGACCACCAATCTGGGAAggtaacatgtcatcctatttctcctccctggccttaggttggatgagggca Alignment from CESAR acCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAg atttctgaccccagcccctccccttcctcctttgccactgtctcccgcagatCTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAACTTCCCAGGCCACTACACATGCAACTGTTATCCTGGTTACAGGCTCAAGGCCTCCAGACCACCAATCTGGGAAggtaacatgtcatcctatttctcctccctggccttaggttggatgagggca Alignment from Spaln_aa2Genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG atttctgaccccagcccctccccttcctcctttgccactgtctcccgcagATCTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAACTTCCCAGGCCACTACACATGCAACTGTTATCCTGGTTACAGGCTCAAGGCCTCCAGACCACCAATCTGGGAAGgtaacatgtcatcctatttctcctccctggccttaggttggatgagggca Alignment from Spaln_nt2Genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG atttctgaccccagcccctccccttcctcctttgccactgtctcccgcagATCTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAACTTCCCAGGCCACTACACATGCAACTGTTATCCTGGTTACAGGCTCAAGGCCTCCAGACCACCAATCTGGGAAGgtaacatgtcatcctatttctcctccctggccttaggttggatgagggca Alignment from Pairagon ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG atttctgaccccagcccctccccttcctcctttgccactgtctcccgcagATCTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAACTTCCCAGGCCACTACACATGCAACTGTTATCCTGGTTACAGGCTCAAGGCCTCCAGACCACCAATCTGGGAAGgtaacatgtcatcctatttctcctccctggccttaggttggatgagggca Alignment from Exonerate_protein2genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG atttctgaccccagcccctccccttcctcctttgccactgtctcccgcagATCTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAACTTCCCAGGCCACTACACATGCAACTGTTATCCTGGTTACAGGCTCAAGGCCTCCAGACCACCAATCTGGGAAGgtaacatgtcatcctatttctcctccctggccttaggttggatgagggca Alignment from Exonerate_coding2genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG atttctgaccccagcccctccccttcctcctttgccactgtctcccgcagATCTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAACTTCCCAGGCCACTACACATGCAACTGTTATCCTGGTTACAGGCTCAAGGCCTCCAGACCACCAATCTGGGAAGgtaacatgtcatcctatttctcctccctggccttaggttggatgagggca Alignment from GeneWise ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG atttctgaccccagcccctccccttcctcctttgccactgtctcccgcagATCTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAACTTCCCAGGCCACTACACATGCAACTGTTATCCTGGTTACAGGCTCAAGGCCTCCAGACCACCAATCTGGGAAGgtaacatgtcatcctatttctcctccctggccttaggttggatgagggca #### Ltbp3_ID1264_16 --> 2 - 1 Original Alignment atGTCAACGAATGCTCCGAGGGTACCCCCTGCTCTCCTGGATGGTGTGAGAACCTTCCGGGTTCTTACCGTTGCACGTGTGCCCAGGGATACGAACCCGCACAGGACGGCCTCAGTTGCATAg atggatggataaatttgaaaggtgactatattctttcctttttttctcagacAGCAATGAATGCCCTGAGGGTACACCTTGCTGTCCTGAATGGTGTGAGAACCTTCCAGGGTCCTACTGTTGCACATCTGCCCATGGATATGAACCTGCACAGGATTGTCTTAGCTGCATAggtatggcactgcaaagctgatccatatgcctgcccggggatttgcagagg Alignment from CESAR atGTCAACGAATGCTCCGAGGGTACCCCCTGCTCTCCTGGATGGTGTGAGAACCTTCCGGGTTCTTACCGTTGCACGTGTGCCCAGGGATACGAACCCGCACAGGACGGCCTCAGTTGCATAg atggatggataaatttgaaaggtgactatattctttcctttttttctcagacAGCAATGAATGCCCTGAGGGTACACCTTGCTGTCCTGAATGGTGTGAGAACCTTCCAGGGTCCTACTGTTGCACATCTGCCCATGGATATGAACCTGCACAGGATTGTCTTAGCTGCATAggtatggcactgcaaagctgatccatatgcctgcccggggatttgcagagg Alignment from Spaln_aa2Genome ATGTCAACGAATGCTCCGAGGGTACCCCCTGCTCTCCTGGATGGTGTGAGAACCTTCCGGGTTCTTACCGTTGCACGTGTGCCCAGGGATACGAACCCGCACAGGACGGCCTCAGTTGCATAG atggatggataaatttgaaaggtgactatattctttcctttttttctcagACAGCAATGAATGCCCTGAGGGTACACCTTGCTGTCCTGAATGGTGTGAGAACCTTCCAGGGTCCTACTGTTGCACATCTGCCCATGGATATGAACCTGCACAGGATTGTCTTAGCTGCATAGgtatggcactgcaaagctgatccatatgcctgcccggggatttgcagagg Alignment from Spaln_nt2Genome ATGTCAACGAATGCTCCGAGGGTACCCCCTGCTCTCCTGGATGGTGTGAGAACCTTCCGGGTTCTTACCGTTGCACGTGTGCCCAGGGATACGAACCCGCACAGGACGGCCTCAGTTGCATAG atggatggataaatttgaaaggtgactatattctttcctttttttctcagACAGCAATGAATGCCCTGAGGGTACACCTTGCTGTCCTGAATGGTGTGAGAACCTTCCAGGGTCCTACTGTTGCACATCTGCCCATGGATATGAACCTGCACAGGATTGTCTTAGCTGCATAGgtatggcactgcaaagctgatccatatgcctgcccggggatttgcagagg Alignment from Pairagon ATGTCAACGAATGCTCCGAGGGTACCCCCTGCTCTCCTGGATGGTGTGAGAACCTTCCGGGTTCTTACCGTTGCACGTGTGCCCAGGGATACGAACCCGCACAGGACGGCCTCAGTTGCATAG atggatggataaatttgaaaggtgactatattctttcctttttttctcagACAGCAATGAATGCCCTGAGGGTACACCTTGCTGTCCTGAATGGTGTGAGAACCTTCCAGGGTCCTACTGTTGCACATCTGCCCATGGATATGAACCTGCACAGGATTGTCTTAGCTGCATAGgtatggcactgcaaagctgatccatatgcctgcccggggatttgcagagg Alignment from Exonerate_protein2genome ATGTCAACGAATGCTCCGAGGGTACCCCCTGCTCTCCTGGATGGTGTGAGAACCTTCCGGGTTCTTACCGTTGCACGTGTGCCCAGGGATACGAACCCGCACAGGACGGCCTCAGTTGCATAG atggatggataaatttgaaaggtgactatattctttcctttttttctcagACAGCAATGAATGCCCTGAGGGTACACCTTGCTGTCCTGAATGGTGTGAGAACCTTCCAGGGTCCTACTGTTGCACATCTGCCCATGGATATGAACCTGCACAGGATTGTCTTAGCTGCATAGgtatggcactgcaaagctgatccatatgcctgcccggggatttgcagagg Alignment from Exonerate_coding2genome ATGTCAACGAATGCTCCGAGGGTACCCCCTGCTCTCCTGGATGGTGTGAGAACCTTCCGGGTTCTTACCGTTGCACGTGTGCCCAGGGATACGAACCCGCACAGGACGGCCTCAGTTGCATAG atggatggataaatttgaaaggtgactatattctttcctttttttctcagACAGCAATGAATGCCCTGAGGGTACACCTTGCTGTCCTGAATGGTGTGAGAACCTTCCAGGGTCCTACTGTTGCACATCTGCCCATGGATATGAACCTGCACAGGATTGTCTTAGCTGCATAGgtatggcactgcaaagctgatccatatgcctgcccggggatttgcagagg Alignment from GeneWise CAACGAATGCTCCGAGGGTACCCCCTGCTCTCCTGGATGGTGTGAGAACCTTCCGGGTTCTTACCGTTGCACGTGTGCCCAGGGATACGAACCCGCACAGGACGGCCTCAGTTGCATAG atggatggataaatttgaaaggtgactatattctttcctttttttctcagacagCAATGAATGCCCTGAGGGTACACCTTGCTGTCCTGAATGGTGTGAGAACCTTCCAGGGTCCTACTGTTGCACATCTGCCCATGGATATGAACCTGCACAGGATTGTCTTAGCTGCATAGgtatggcactgcaaagctgatccatatgcctgcccggggatttgcagagg #### Ltbp3_ID1266_18 --> 2 - 1 Original Alignment acATTGATGAATGTGACTTCCCTGCGGCCTGCATCGGGGGTGACTGCATCAATACCAATGGTTCCTACAGATGTCTCTGTCCCCAGGGTCATCGGTTGGTGGGCGGTAGGAAGTGCCAAg tgtgacactttgatggtcgagattgatctaaagttaaattttctctgtagacATTGATGAATGTGATTTCCCTGCTGCTTGCATTGGAGGTGATTGCATCAATGCAAATGGTTCCTACAGATGTCTCTGTCCTCAGGGGCATCGGTTGGTTGGCGGCAGGAAGTGCCAGggtaagtgattggccacagacttgggtccaactctgaaagtcaaagcagga Alignment from CESAR acATTGATGAATGTGACTTCCCTGCGGCCTGCATCGGGGGTGACTGCATCAATACCAATGGTTCCTACAGATGTCTCTGTCCCCAGGGTCATCGGTTGGTGGGCGGTAGGAAGTGCCAAg tgtgacactttgatggtcgagattgatctaaagttaaattttctctgtagacATTGATGAATGTGATTTCCCTGCTGCTTGCATTGGAGGTGATTGCATCAATGCAAATGGTTCCTACAGATGTCTCTGTCCTCAGGGGCATCGGTTGGTTGGCGGCAGGAAGTGCCAGggtaagtgattggccacagacttgggtccaactctgaaagtcaaagcagga Alignment from Spaln_aa2Genome ACATTGATGAATGTGACTTCCCTGCGGCCTGCATCGGGGGTGACTGCATCAATACCAATGGTTCCTACAGATGTCTCTGTCCCCAGGGTCATCGGTTGGTGGGCGGTAGGAAGTGCCAAG tgtgacactttgatggtcgagattgatctaaagttaaattttctctgtagACATTGATGAATGTGATTTCCCTGCTGCTTGCATTGGAGGTGATTGCATCAATGCAAATGGTTCCTACAGATGTCTCTGTCCTCAGGGGCATCGGTTGGTTGGCGGCAGGAAGTGCCAGGgtaagtgattggccacagacttgggtccaactctgaaagtcaaagcagga Alignment from Spaln_nt2Genome ACATTGATGAATGTGACTTCCCTGCGGCCTGCATCGGGGGTGACTGCATCAATACCAATGGTTCCTACAGATGTCTCTGTCCCCAGGGTCATCGGTTGGTGGGCGGTAGGAAGTGCCAAG tgtgacactttgatggtcgagattgatctaaagttaaattttctctgtagACATTGATGAATGTGATTTCCCTGCTGCTTGCATTGGAGGTGATTGCATCAATGCAAATGGTTCCTACAGATGTCTCTGTCCTCAGGGGCATCGGTTGGTTGGCGGCAGGAAGTGCCAGGgtaagtgattggccacagacttgggtccaactctgaaagtcaaagcagga Alignment from Pairagon ACATTGATGAATGTGACTTCCCTGCGGCCTGCATCGGGGGTGACTGCATCAATACCAATGGTTCCTACAGATGTCTCTGTCCCCAGGGTCATCGGTTGGTGGGCGGTAGGAAGTGCCAAG tgtgacactttgatggtcgagattgatctaaagttaaattttctctgtagACATTGATGAATGTGATTTCCCTGCTGCTTGCATTGGAGGTGATTGCATCAATGCAAATGGTTCCTACAGATGTCTCTGTCCTCAGGGGCATCGGTTGGTTGGCGGCAGGAAGTGCCAGGgtaagtgattggccacagacttgggtccaactctgaaagtcaaagcagga Alignment from Exonerate_protein2genome ACATTGATGAATGTGACTTCCCTGCGGCCTGCATCGGGGGTGACTGCATCAATACCAATGGTTCCTACAGATGTCTCTGTCCCCAGGGTCATCGGTTGGTGGGCGGTAGGAAGTGCCAAG tgtgacactttgatggtcgagattgatctaaagttaaattttctctgtagACATTGATGAATGTGATTTCCCTGCTGCTTGCATTGGAGGTGATTGCATCAATGCAAATGGTTCCTACAGATGTCTCTGTCCTCAGGGGCATCGGTTGGTTGGCGGCAGGAAGTGCCAGGgtaagtgattggccacagacttgggtccaactctgaaagtcaaagcagga Alignment from Exonerate_coding2genome ACATTGATGAATGTGACTTCCCTGCGGCCTGCATCGGGGGTGACTGCATCAATACCAATGGTTCCTACAGATGTCTCTGTCCCCAGGGTCATCGGTTGGTGGGCGGTAGGAAGTGCCAAG tgtgacactttgatggtcgagattgatctaaagttaaattttctctgtagACATTGATGAATGTGATTTCCCTGCTGCTTGCATTGGAGGTGATTGCATCAATGCAAATGGTTCCTACAGATGTCTCTGTCCTCAGGGGCATCGGTTGGTTGGCGGCAGGAAGTGCCAGGgtaagtgattggccacagacttgggtccaactctgaaagtcaaagcagga Alignment from GeneWise ACATTGATGAATGTGACTTCCCTGCGGCCTGCATCGGGGGTGACTGCATCAATACCAATGGTTCCTACAGATGTCTCTGTCCCCAGGGTCATCGGTTGGTGGGCGGTAGGAAGTGCCAAG tgtgacactttgatggtcgagattgatctaaagttaaattttctctgtagACATTGATGAATGTGATTTCCCTGCTGCTTGCATTGGAGGTGATTGCATCAATGCAAATGGTTCCTACAGATGTCTCTGTCCTCAGGGGCATCGGTTGGTTGGCGGCAGGAAGTGCCAGGgtaagtgattggccacagacttgggtccaactctgaaagtcaaagcagga #### Macrod1_ID2050_5 --> 2 - 1 Original Alignment tgGACGGCTGCATTCATCGGGCCGCGGGATCCCTGCTCACGGACGAATGCCGCACCCTACAGAACTGCGAGACCGGCAAAGCCAAGATCACTTGCGGCTATCGGCTGCCAGCCAAGt gtcctctgcagttggctgtcagttctgcctcttttccgatggatgggaagtgGATGGCTGTACACATCGGGCCGCAGGAGCCCTGCTCATGGATGAGTGCCGCACCCTACAGAACTGTGAGACTGGCAAGGCCAAGATAACCTGTGGGTATCGACTGCCAGCCAAGtgtacacgataactgctcacccggtatggggtgtccgtacaagaaatgttc Alignment from CESAR tgGACGGCTGCATTCATCGGGCCGCGGGATCCCTGCTCACGGACGAATGCCGCACCCTACAGAACTGCGAGACCGGCAAAGCCAAGATCACTTGCGGCTATCGGCTGCCAGCCAAGt gtcctctgcagttggctgtcagttctgcctcttttccgatggatgggaagtgGATGGCTGTACACATCGGGCCGCAGGAGCCCTGCTCATGGATGAGTGCCGCACCCTACAGAACTGTGAGACTGGCAAGGCCAAGATAACCTGTGGGTATCGACTGCCAGCCAAGtgtacacgataactgctcacccggtatggggtgtccgtacaagaaatgttc Alignment from Spaln_aa2Genome TGGACGGCTGCATTCATCGGGCCGCGGGATCCCTGCTCACGGACGAATGCCGCACCCTACAGAACTGCGAGACCGGCAAAGCCAAGATCACTTGCGGCTATCGGCTGCCAGCCAAGT gtcctctgcagttggctgtcagttctgcctcttttccgatggatgggaagTGGATGGCTGTACACATCGGGCCGCAGGAGCCCTGCTCATGGATGAGTGCCGCACCCTACAGAACTGTGAGACTGGCAAGGCCAAGATAACCTGTGGGTATCGACTGCCAGCCAAGTgtacacgataactgctcacccggtatggggtgtccgtacaagaaatgttc Alignment from Spaln_nt2Genome TGGACGGCTGCATTCATCGGGCCGCGGGATCCCTGCTCACGGACGAATGCCGCACCCTACAGAACTGCGAGACCGGCAAAGCCAAGATCACTTGCGGCTATCGGCTGCCAGCCAAGT gtcctctgcagttggctgtcagttctgcctcttttccgatggatgggaagTGGATGGCTGTACACATCGGGCCGCAGGAGCCCTGCTCATGGATGAGTGCCGCACCCTACAGAACTGTGAGACTGGCAAGGCCAAGATAACCTGTGGGTATCGACTGCCAGCCAAGTgtacacgataactgctcacccggtatggggtgtccgtacaagaaatgttc Alignment from Pairagon TGGACGGCTGCATTCATCGGGCCGCGGGATCCCTGCTCACGGACGAATGCCGCACCCTACAGAACTGCGAGACCGGCAAAGCCAAGATCACTTGCGGCTATCGGCTGCCAGCCAAGT gtcctctgcagttggctgtcagttctgcctcttttccgatggatgggaagTGGATGGCTGTACACATCGGGCCGCAGGAGCCCTGCTCATGGATGAGTGCCGCACCCTACAGAACTGTGAGACTGGCAAGGCCAAGATAACCTGTGGGTATCGACTGCCAGCCAAGTgtacacgataactgctcacccggtatggggtgtccgtacaagaaatgttc Alignment from Exonerate_protein2genome TGGACGGCTGCATTCATCGGGCCGCGGGATCCCTGCTCACGGACGAATGCCGCACCCTACAGAACTGCGAGACCGGCAAAGCCAAGATCACTTGCGGCTATCGGCTGCCAGCCAAGTATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCA gtcctctgcagttggctgtcagttctgcctcttttccgatggatgggaagTGGATGGCTGTACACATCGGGCCGCAGGAGCCCTGCTCATGGATGAGTGCCGCACCCTACAGAACTGTGAGACTGGCAAGGCCAAGATAACCTGTGGGTATCGACTGCCAGCCAAGTGTACACGATAACTGCTCACCCGGTATGGGGTGTCCGTACAAGaaatgttc Alignment from Exonerate_coding2genome AGGCGGAGGGGTGGACGGCTGCATTCATCGGGCCGCGGGATCCCTGCTCACGGACGAATGCCGCACCCTACAGAACTGCGAGACCGGCAAAGCCAAGATCACTTGCGGCTATCGGCTGCCAGCCAAG gtcctctgcagttggctgtcagttctgcctcttttccgaTGGATGGGAAGTGGATGGCTGTACACATCGGGCCGCAGGAGCCCTGCTCATGGATGAGTGCCGCACCCTACAGAACTGTGAGACTGGCAAGGCCAAGATAACCTGTGGGTATCGACTGCCAGCCAAGtgtacacgataactgctcacccggtatggggtgtccgtacaagaaatgttc Alignment from GeneWise -----GCCAACAGCTCCCTGCTTGGAGGCGGAGGG---GTGGACGGCTGCATTCATCGGGCCGCGGGATCCCTGCTCACGGACGAATGCCGCACCCTACAGAACTGCGAGACCGGCAAAGCCAAGATCACTTGCGGCTATCGGCTGCCAGCCAAGT gtcctctgcagTTGGCTGTCAGTTCTGCCTCTTTTCCGATGGATGGGAAGTGGATGGCTGTACACATCGGGCCGCAGGAGCCCTGCTCATGGATGAGTGCCGCACCCTACAGAACTGTGAGACTGGCAAGGCCAAGATAACCTGTGGGTATCGACTGCCAGCCAAGTgtacacgataactgctcacccggtatggggtgtccgtacaagaaatgttc #### Macrod1_ID2052_7 --> 0 - 1 Original Alignment GCTTTCCCGTGCATCTCCACAGGCGTGTTTg aaatagagaaaaaccatatgcgtgtctggttcttcttttgtgttgcacagACCTTTCCATGCATCTCCACAGGGGTGATTagcaagttcaggagaacttggaacatggaatcatggaaaatcgaatagaat Alignment from CESAR GCTTTCCCGTGCATCTCCACAGGCGTGTTTg aaatagagaaaaaccatatgcgtgtctggttcttcttttgtgttgcacagACCTTTCCATGCATCTCCACAGGGGTGATTagcaagttcaggagaacttggaacatggaatcatggaaaatcgaatagaat Alignment from Spaln_aa2Genome GCTTTCCCGTGCATCTCCACAGGCGTGTTTG aaatagagaaaaaccatatgcgtgtctggttcttcttttgtgttgcacagACCTTTCCATGCATCTCCACAGGGGTGATTAgcaagttcaggagaacttggaacatggaatcatggaaaatcgaatagaat Alignment from Spaln_nt2Genome GCTTTCCCGTGCATCTCCACAGGCGTGTTTG aaatagagaaaaaccatatgcgtgtctggttcttcttttgtgttgcacagACCTTTCCATGCATCTCCACAGGGGTGATTAgcaagttcaggagaacttggaacatggaatcatggaaaatcgaatagaat Alignment from Pairagon GCTTTCCCGTGCATCTCCACAGGCGTGTTTG aaatagagaaaaaccatatgcgtgtctggttcttcttttgtgttgcacagACCTTTCCATGCATCTCCACAGGGGTGATTAgcaagttcaggagaacttggaacatggaatcatggaaaatcgaatagaat Alignment from Exonerate_protein2genome aaatagagaaaaaccatatgcgtgtctggttcttcttttgtgttgcacagacctttccatgcatctccacaggggtgattagcaagttcaggagaacttggaacatggaatcatggaaaatcgaatagaat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise aaatagagaaaaaccatatgcgtgtctggttcttcttttgtgttgcacagacctttccatgcatctccacaggggtgattagcaagttcaggagaacttggaacatggaatcatggaaaatcgaatagaat #### Map3k11_ID1205_6 --> 2 - 1 Original Alignment atTTCAAACACCGCATCACAGTGCAAGCCTCTCCTGGCCTGGATCGGAGGAGAAACGTGTTCGAGGTTGGGGCTGGGGACTCGCCCACCTTCCCTAGATTCCGAGCCATCCAGt aaagggctgtcagttgtgccaccagacctgcatgatttgattgtttgcagacTTCAAACATCGAATCACGGTACAGGCAGCTCCTGGCCTTGATCGGAGGAGAAATGTGTTCAAAGTTGGGGCTGGGGACTCACCAACTTTCCCCAGGTTTCAATCCATCCAAtgtaggggctcgccagcacccccacatataaggcctaggattgattattgg Alignment from CESAR atTTCAAACACCGCATCACAGTGCAAGCCTCTCCTGGCCTGGATCGGAGGAGAAACGTGTTCGAGGTTGGGGCTGGGGACTCGCCCACCTTCCCTAGATTCCGAGCCATCCAGt aaagggctgtcagttgtgccaccagacctgcatgatttgattgtttgcagacTTCAAACATCGAATCACGGTACAGGCAGCTCCTGGCCTTGATCGGAGGAGAAATGTGTTCAAAGTTGGGGCTGGGGACTCACCAACTTTCCCCAGGTTTCAATCCATCCAAtgtaggggctcgccagcacccccacatataaggcctaggattgattattgg Alignment from Spaln_aa2Genome ATTTCAAACACCGCATCACAGTGCAAGCCTCTCCTGGCCTGGATCGGAGGAGAAACGTGTTCGAGGTTGGGGCTGGGGACTCGCCCACCTTCCCTAGATTCCGAGCCATCCAGT aaagggctgtcagttgtgccaccagacctgcatgatttgattgtttgcagACTTCAAACATCGAATCACGGTACAGGCAGCTCCTGGCCTTGATCGGAGGAGAAATGTGTTCAAAGTTGGGGCTGGGGACTCACCAACTTTCCCCAGGTTTCAATCCATCCAATgtaggggctcgccagcacccccacatataaggcctaggattgattattgg Alignment from Spaln_nt2Genome ATTTCAAACACCGCATCACAGTGCAAGCCTCTCCTGGCCTGGATCGGAGGAGAAACGTGTTCGAGGTTGGGGCTGGGGACTCGCCCACCTTCCCTAGATTCCGAGCCATCCAGT aaagggctgtcagttgtgccaccagacctgcatgatttgattgtttgcagACTTCAAACATCGAATCACGGTACAGGCAGCTCCTGGCCTTGATCGGAGGAGAAATGTGTTCAAAGTTGGGGCTGGGGACTCACCAACTTTCCCCAGGTTTCAATCCATCCAATgtaggggctcgccagcacccccacatataaggcctaggattgattattgg Alignment from Pairagon ATTTCAAACACCGCATCACAGTGCAAGCCTCTCCTGGCCTGGATCGGAGGAGAAACGTGTTCGAGGTTGGGGCTGGGGACTCGCCCACCTTCCCTAGATTCCGAGCCATCCAGT aaagggctgtcagttgtgccaccagacctgcatgatttgattgtttgcagACTTCAAACATCGAATCACGGTACAGGCAGCTCCTGGCCTTGATCGGAGGAGAAATGTGTTCAAAGTTGGGGCTGGGGACTCACCAACTTTCCCCAGGTTTCAATCCATCCAATgtaggggctcgccagcacccccacatataaggcctaggattgattattgg Alignment from Exonerate_protein2genome ATTTCAAACACCGCATCACAGTGCAAGCCTCTCCTGGCCTGGATCGGAGGAGAAACGTGTTCGAGGTTGGGGCTGGGGACTCGCCCACCTTCCCTAGATTCCGAGCCATCCAGT aaagggctgtcagttgtgccaccagacctgcatgatttgattgtttgcagACTTCAAACATCGAATCACGGTACAGGCAGCTCCTGGCCTTGATCGGAGGAGAAATGTGTTCAAAGTTGGGGCTGGGGACTCACCAACTTTCCCCAGGTTTCAATCCATCCAATgtaggggctcgccagcacccccacatataaggcctaggattgattattgg Alignment from Exonerate_coding2genome ATTTCAAACACCGCATCACAGTGCAAGCCTCTCCTGGCCTGGATCGGAGGAGAAACGTGTTCGAGGTTGGGGCTGGGGACTCGCCCACCTTCCCTAGATTCCGAGCCATCCAGT aaagggctgtcagttgtgccaccagacctgcatgatttgattgtttgcagACTTCAAACATCGAATCACGGTACAGGCAGCTCCTGGCCTTGATCGGAGGAGAAATGTGTTCAAAGTTGGGGCTGGGGACTCACCAACTTTCCCCAGGTTTCAATCCATCCAATgtaggggctcgccagcacccccacatataaggcctaggattgattattgg Alignment from GeneWise ATTTCAAACACCGCATCACAGTGCAAGCCTCTCCTGGCCTGGATCGGAGGAGAAACGTGTTCGAGGTTGGGGCTGGGGACTCGCCCACCTTCCCTAGATTCCGAGCCATCCAGT aaagggctgtcagttgtgccaccagacctgcatgatttgattgtttgcagACTTCAAACATCGAATCACGGTACAGGCAGCTCCTGGCCTTGATCGGAGGAGAAATGTGTTCAAAGTTGGGGCTGGGGACTCACCAACTTTCCCCAGGTTTCAATCCATCCAATgtaggggctcgccagcacccccacatataaggcctaggattgattattgg #### Map4k2_ID1629_8 --> 2 - 2 Original Alignment cgGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACtg tggtgtaggacacatatgtgcccccaggcatgtttattttcactttgcagctGATTTTGGGGTCACGGATGGAGCTACAACATCTGTTGCTAAGAGGCACTCTCTCATAGGCAGTCCATACtggtaagttgttccagagcatgggtgaagagcatattgagaggatcaccaga Alignment from CESAR cgGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACtg tggtgtaggacacatatgtgcccccaggcatgtttattttcactttgcagctGATTTTGGGGTCACGGATGGAGCTACAACATCTGTTGCTAAGAGGCACTCTCTCATAGGCAGTCCATACtggtaagttgttccagagcatgggtgaagagcatattgagaggatcaccaga Alignment from Spaln_aa2Genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG tggtgtaggacacatatgtgcccccaggcatgtttattttcactttgcagCTGATTTTGGGGTCACGGATGGAGCTACAACATCTGTTGCTAAGAGGCACTCTCTCATAGGCAGTCCATACTGgtaagttgttccagagcatgggtgaagagcatattgagaggatcaccaga Alignment from Spaln_nt2Genome CGGACTTTGGGGTGTCAGGCG-AGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG tggtgtaggacacatatgtgcccccaggcatgtttattttcactttgcagCTGATTTTGGGGTCACGGATGGAGCT-ACAACATCTGTTGCTAAGAGGCACTCTCTCATAGGCAGTCCATACTGgtaagttgttccagagcatgggtgaagagcatattgagaggatcaccaga Alignment from Pairagon CAAGCTGGCGGACTTTGGGGTGTCAGGCGAGCTG-----------------------ACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG tggtgtaggacacatatgtgcccccaggcatgtttattttcactttgcag-------------------------------CTGATTTTGGGGTCACGGATGGAGCTACAACATCTGTTGCTAAGAGGCACTCTCTCATAGGCAGTCCATACTGgtaagttgttccagagcatgggtgaagagcatattgagaggatcaccaga Alignment from Exonerate_protein2genome tggtgtaggacacatatgtgcccccaggcatgtttattttcactttgcagctgattttggggtcacggatggagctacaacatctgttgctaagaggcactctctcataggcagtccatactggtaagttgttccagagcatgggtgaagagcatattgagaggatcaccaga Alignment from Exonerate_coding2genome tggtgtaggacacatatgtgcccccaggcatgtttattttcactttgcagctgattttggggtcacggatggagctacaacatctgttgctaagaggcactctctcataggcagtccatactggtaagttgttccagagcatgggtgaagagcatattgagaggatcaccaga Alignment from GeneWise CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG tggtgtaggacacatatgtgcccccaggcatgtttattttcactttgcagCTGATTTTGGGGTCACGGATGGAGCTACAACATCTGTTGCTAAGAGGCACTCTCTCATAGGCAGTCCATACTGgtaagttgttccagagcatgggtgaagagcatattgagaggatcaccaga #### Map4k2_ID1630_9 --> 1 - 2 Original Alignment gATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGag gagcatattgagaggatcaccagatctacacctggaacttttgaatgcaggATGGCCCCAGAAGTTGCTGCTGTGGAGCGTAAGGGTGGCTACAATGAGCTATGTGACATATGGGCATTAGGTATTACTCCAGTGGAATCAAGTGAACTCCAACATCCGTTACTCCACCTGCACCCCATGaggtaagatcagaacttgcagtgtgctcgtccctcctgatacccttgacatg Alignment from CESAR gATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGag gagcatattgagaggatcaccagatctacacctggaacttttgaatgcaggATGGCCCCAGAAGTTGCTGCTGTGGAGCGTAAGGGTGGCTACAATGAGCTATGTGACATATGGGCATTAGGTATTACTCCAGTGGAATCAAGTGAACTCCAACATCCGTTACTCCACCTGCACCCCATGaggtaagatcagaacttgcagtgtgctcgtccctcctgatacccttgacttt Alignment from Spaln_aa2Genome GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gagcatattgagaggatcaccagatctacacctggaacttttgaatgcagGATGGCCCCAGAAGTTGCTGCTGTGGAGCGTAAGGGTGGCTACAATGAGCTATGTGACATATGGGCATTAGGTATTACTCCAGTGGAATCAAGTGAACTCCAACATCCGTTACTCCACCTGCACCCCATGAGgtaagatcagaacttgcagtgtgctcgtccctcctgatacccttgacatg Alignment from Spaln_nt2Genome GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gagcatattgagaggatcaccagatctacacctggaacttttgaatgcagGATGGCCCCAGAAGTTGCTGCTGTGGAGCGTAAGGGTGGCTACAATGAGCTATGTGACATATGGGCATTAGGTATTACTCCAGTGGAATCAAGTGAACTCCAACATCCGTTACTCCACCTGCACCCCATGAGgtaagatcagaacttgcagtgtgctcgtccctcctgatacccttgacatg Alignment from Pairagon GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTG---------------------------TTCCACCTGCACCCCATGAG gagcatattgagaggatcaccagatctacacctggaacttttgaatgcagGATGGCCCCAGAAGTTGCTGCTGTGGAGCGTAAGGGTGGCTACAATGAGCTATGTGACATATGGGCATTAGGTATTACT---------------------------CCAGTGGAATCAAGTGAACTCCAACATCCGTTACTCCACCTGCACCCCATGAGgtaagatcagaacttgcagtgtgctcgtccctcctgatacccttgacatg Alignment from Exonerate_protein2genome gagcatattgagaggatcaccagatctacacctggaacttttgaatgcaggatggccccagaagttgctgctgtggagcgtaagggtggctacaatgagctatgtgacatatgggcattaggtattactccagtggaatcaagtgaactccaacatccgttactccacctgcaccccatgaggtaagatcagaacttgcagtgtgctcgtccctcctgatacccttgacatg Alignment from Exonerate_coding2genome gagcatattgagaggatcaccagatctacacctggaacttttgaatgcaggatggccccagaagttgctgctgtggagcgtaagggtggctacaatgagctatgtgacatatgggcattaggtattactccagtggaatcaagtgaactccaacatccgttactccacctgcaccccatgaggtaagatcagaacttgcagtgtgctcgtccctcctgatacccttgacatg Alignment from GeneWise GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gagcatattgagaggatcaccagatctacacctggaacttttgaatgcagGATGGCCCCAGAAGTTGCTGCTGTGGAGCGTAAGGGTGGCTACAATGAGCTATGTGACATATGGGCATTAGGTATTACTCCAGTGGAATCAAGTGAACTCCAACATCCGTTACTCCACCTGCACCCCATGAGgtaagatcagaacttgcagtgtgctcgtccctcctgatacccttgacatg #### Map4k2_ID1641_20 --> 0 - 0 Original Alignment CGATCATCCTGCCATGGGCTTCCTCCCACCCCCAAGGTGCAC taactggatggtaagggtgggaatcctactttgttctgtcttctctacagCGGTCATCCTGTTATGGTCTTCCTCCCACCCCGAAGGTCCCTgtgaggggtgccatgatgtcctagccaactgggctgcttccctgtctctt Alignment from CESAR CGATCATCCTGCCATGGGCTTCCTCCCACCCCCAAGGTGCAC taactggatggtaagggtgggaatcctactttgttctgtcttctctacagCGGTCATCCTGTTATGGTCTTCCTCCCACCCCGAAGGTCCCTgtgaggggtgccatgatgtcctagccaactggtctttctgtcaccctggg Alignment from Spaln_aa2Genome CGATCATCCTGCCATGGGCTTCCTCCCACCCCCAAGGTGCAC taactggatggtaagggtgggaatcctactttgttctgtcttctctacagCGGTCATCCTGTTATGGTCTTCCTCCCACCCCGAAGGTCCCTgtgaggggtgccatgatgtcctagccaactgggctgcttccctgtctctt Alignment from Spaln_nt2Genome CGATCATCCTGCCATGGGCTTCCTCCCACCCCCAAGGTGCAC taactggatggtaagggtgggaatcctactttgttctgtcttctctacagCGGTCATCCTGTTATGGTCTTCCTCCCACCCCGAAGGTCCCTgtgaggggtgccatgatgtcctagccaactgggctgcttccctgtctctt Alignment from Pairagon CGATCATCCTGCCATGGGCTTCCTCCCACCCCCAAGG------------------------------------------------------T taactggatggtaagggtgggaatcctactttgttctgtcttctctacagCGGTCATCCTGTTATGGTCTTCCTCCCACCCCGAAGGTCCCTGTGAGGGGTGCCATGATGTCCTAGCCAACTGGGCTGCTTCCCTGTCTCTT Alignment from Exonerate_protein2genome CGATCATCCTGCCATGGGCTTCCTCCCACCCCCAAGGTGCAC taactggatggtaagggtgggaatcctactttgttctgtcttctctacagCGGTCATCCTGTTATGGTCTTCCTCCCACCCCGAAGGTCCCTgtgaggggtgccatgatgtcctagccaactgggctgcttccctgtctctt Alignment from Exonerate_coding2genome CATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAGCGATCATCCTGCCATGGGCTTCCTCCCACCCCCAAGGTGCAC TAACTGGATGGTAAGGGTGGGAATCCTACTTTGTTCTGTCTTCTCTACAGCGGTCATCCTGTTATGGTCTTCCTCCCACCCCGAAGGTCCCTgtgaggggtgccatgatgtcctagccaactgggctgcttccctgtctctt Alignment from GeneWise CGATCATCCTGCCATGGGCTTCCTCCCACCCCCAAGGTGCAC taactggatggtaagggtgggaatcctactttgttctgtcttctctacagCGGTCATCCTGTTATGGTCTTCCTCCCACCCCGAAGGTCCCTgtgaggggtgccatgatgtcctagccaactgggctgcttccctgtctctt #### March5_ID7300_2 --> 1 - 1 Original Alignment aAGTTGCTGGGTGTGCTTTGCCACCGATGAAGATGATAGAACAGCTGAGTGGGTGAGACCATGCAGGTGCAGAGGATCTACTAAGTGGGTTCACCAGGCTTGTCTCCAGCGCTGGGTAGATGAAAAGCAAAGAGGAAACAGCACAGCCAGAGTGGCCTGTCCTCAGTGCAACGCCGAGTACTTAATAGTGTTTCCAAAGCTGg ctggcaggaaggttggacccttctaataattaccacatttttctttacagaAGTTGCTGGGTGTGCTTTGCCACTGATGAAGATGATCGGATGGCTGAGTGGGTGAGACTGTGCAGGTGTAGAGGGTCTACTAAGTGGGTACACCAAGCTTGCCTCCAACGCTGGGTGGATGAGAAGCAGAGAGGAAACAGCACAGCCAGAGTGGCCTGTCCCCAGTGCAATGCTGAGTACTTAATAGTATTCCCTAAACTAggtgagctcctctctggaatgcactgttggcaaattcctagataactgttg Alignment from CESAR aAGTTGCTGGGTGTGCTTTGCCACCGATGAAGATGATAGAACAGCTGAGTGGGTGAGACCATGCAGGTGCAGAGGATCTACTAAGTGGGTTCACCAGGCTTGTCTCCAGCGCTGGGTAGATGAAAAGCAAAGAGGAAACAGCACAGCCAGAGTGGCCTGTCCTCAGTGCAACGCCGAGTACTTAATAGTGTTTCCAAAGCTGg ctggcaggaaggttggacccttctaataattaccacatttttctttacagaAGTTGCTGGGTGTGCTTTGCCACTGATGAAGATGATCGGATGGCTGAGTGGGTGAGACTGTGCAGGTGTAGAGGGTCTACTAAGTGGGTACACCAAGCTTGCCTCCAACGCTGGGTGGATGAGAAGCAGAGAGGAAACAGCACAGCCAGAGTGGCCTGTCCCCAGTGCAATGCTGAGTACTTAATAGTATTCCCTAAACTAggtgagctcctctctggaatgcactgttggcaaattcctagataactgttg Alignment from Spaln_aa2Genome AAGTTGCTGGGTGTGCTTTGCCACCGATGAAGATGATAGAACAGCTGAGTGGGTGAGACCATGCAGGTGCAGAGGATCTACTAAGTGGGTTCACCAGGCTTGTCTCCAGCGCTGGGTAGATGAAAAGCAAAGAGGAAACAGCACAGCCAGAGTGGCCTGTCCTCAGTGCAACGCCGAGTACTTAATAGTGTTTCCAAAGCTGG ctggcaggaaggttggacccttctaataattaccacatttttctttacagAAGTTGCTGGGTGTGCTTTGCCACTGATGAAGATGATCGGATGGCTGAGTGGGTGAGACTGTGCAGGTGTAGAGGGTCTACTAAGTGGGTACACCAAGCTTGCCTCCAACGCTGGGTGGATGAGAAGCAGAGAGGAAACAGCACAGCCAGAGTGGCCTGTCCCCAGTGCAATGCTGAGTACTTAATAGTATTCCCTAAACTAGgtgagctcctctctggaatgcactgttggcaaattcctagataactgttg Alignment from Spaln_nt2Genome AAGTTGCTGGGTGTGCTTTGCCACCGATGAAGATGATAGAACAGCTGAGTGGGTGAGACCATGCAGGTGCAGAGGATCTACTAAGTGGGTTCACCAGGCTTGTCTCCAGCGCTGGGTAGATGAAAAGCAAAGAGGAAACAGCACAGCCAGAGTGGCCTGTCCTCAGTGCAACGCCGAGTACTTAATAGTGTTTCCAAAGCTGG ctggcaggaaggttggacccttctaataattaccacatttttctttacagAAGTTGCTGGGTGTGCTTTGCCACTGATGAAGATGATCGGATGGCTGAGTGGGTGAGACTGTGCAGGTGTAGAGGGTCTACTAAGTGGGTACACCAAGCTTGCCTCCAACGCTGGGTGGATGAGAAGCAGAGAGGAAACAGCACAGCCAGAGTGGCCTGTCCCCAGTGCAATGCTGAGTACTTAATAGTATTCCCTAAACTAGgtgagctcctctctggaatgcactgttggcaaattcctagataactgttg Alignment from Pairagon AAGTTGCTGGGTGTGCTTTGCCACCGATGAAGATGATAGAACAGCTGAGTGGGTGAGACCATGCAGGTGCAGAGGATCTACTAAGTGGGTTCACCAGGCTTGTCTCCAGCGCTGGGTAGATGAAAAGCAAAGAGGAAACAGCACAGCCAGAGTGGCCTGTCCTCAGTGCAACGCCGAGTACTTAATAGTGTTTCCAAAGCTGG ctggcaggaaggttggacccttctaataattaccacatttttctttacagAAGTTGCTGGGTGTGCTTTGCCACTGATGAAGATGATCGGATGGCTGAGTGGGTGAGACTGTGCAGGTGTAGAGGGTCTACTAAGTGGGTACACCAAGCTTGCCTCCAACGCTGGGTGGATGAGAAGCAGAGAGGAAACAGCACAGCCAGAGTGGCCTGTCCCCAGTGCAATGCTGAGTACTTAATAGTATTCCCTAAACTAGgtgagctcctctctggaatgcactgttggcaaattcctagataactgttg Alignment from Exonerate_protein2genome AAGTTGCTGGGTGTGCTTTGCCACCGATGAAGATGATAGAACAGCTGAGTGGGTGAGACCATGCAGGTGCAGAGGATCTACTAAGTGGGTTCACCAGGCTTGTCTCCAGCGCTGGGTAGATGAAAAGCAAAGAGGAAACAGCACAGCCAGAGTGGCCTGTCCTCAGTGCAACGCCGAGTACTTAATAGTGTTTCCAAAGCTGG ctggcaggaaggttggacccttctaataattaccacatttttctttacagAAGTTGCTGGGTGTGCTTTGCCACTGATGAAGATGATCGGATGGCTGAGTGGGTGAGACTGTGCAGGTGTAGAGGGTCTACTAAGTGGGTACACCAAGCTTGCCTCCAACGCTGGGTGGATGAGAAGCAGAGAGGAAACAGCACAGCCAGAGTGGCCTGTCCCCAGTGCAATGCTGAGTACTTAATAGTATTCCCTAAACTAGgtgagctcctctctggaatgcactgttggcaaattcctagataactgttg Alignment from Exonerate_coding2genome CCGGACCAAGCCCTTCAACAGATGCTGGACAGAAGTTGCTGGGTGTGCTTTGCCACCGATGAAGATGATAGAACAGCTGAGTGGGTGAGACCATGCAGGTGCAGAGGATCTACTAAGTGGGTTCACCAGGCTTGTCTCCAGCGCTGGGTAGATGAAAAGCAAAGAGGAAACAGCACAGCCAGAGTGGCCTGTCCTCAGTGCAACGCCGAGTACTTAATAGTGTTTCCAAAGCTGG ctggcaggaaggttggacCCTTCTAATAATTACCACATTTTTCTTTACAGAAGTTGCTGGGTGTGCTTTGCCACTGATGAAGATGATCGGATGGCTGAGTGGGTGAGACTGTGCAGGTGTAGAGGGTCTACTAAGTGGGTACACCAAGCTTGCCTCCAACGCTGGGTGGATGAGAAGCAGAGAGGAAACAGCACAGCCAGAGTGGCCTGTCCCCAGTGCAATGCTGAGTACTTAATAGTATTCCCTAAACTAGgtgagctcctctctggaatgcactgttggcaaattcctagataactgttg Alignment from GeneWise CCGGACCAAGCCCTTCAACAGATGCTGGACAGAAGTTGCTGGGTGTGCTTTGCCACCGATGAAGATGATAGAACAGCTGAGTGGGTGAGACCATGCAGGTGCAGAGGATCTACTAAGTGGGTTCACCAGGCTTGTCTCCAGCGCTGGGTAGATGAAAAGCAAAGAGGAAACAGCACAGCCAGAGTGGCCTGTCCTCAGTGCAACGCCGAGTACTTAATAGTGTTTCCAAAGCTGG ctggcaggaaggttggacCCTTCTAATAATTACCACATTTTTCTTTACAGAAGTTGCTGGGTGTGCTTTGCCACTGATGAAGATGATCGGATGGCTGAGTGGGTGAGACTGTGCAGGTGTAGAGGGTCTACTAAGTGGGTACACCAAGCTTGCCTCCAACGCTGGGTGGATGAGAAGCAGAGAGGAAACAGCACAGCCAGAGTGGCCTGTCCCCAGTGCAATGCTGAGTACTTAATAGTATTCCCTAAACTAGgtgagctcctctctggaatgcactgttggcaaattcctagataactgttg #### March5_ID7302_4 --> 0 - 1 Original Alignment GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAg aagactcctggggtggttggtaatgcaattttcttttcattccttcctagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCTTCTGACTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAggtaagtcattgtggtattggcactcaaagcatacatagctaggatcgatt Alignment from CESAR GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAg aagactcctggggtggttggtaatgcaattttcttttcattccttcctagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCTTCTGACTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAggtaagtcattgtggtattggcactcaaagcatacatagctaggatcgatt Alignment from Spaln_aa2Genome GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG aagactcctggggtggttggtaatgcaattttcttttcattccttcctagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCTTCTGACTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtaagtcattgtggtattggcactcaaagcatacatagctaggatcgatt Alignment from Spaln_nt2Genome GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG aagactcctggggtggttggtaatgcaattttcttttcattccttcctagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCTTCTGACTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtaagtcattgtggtattggcactcaaagcatacatagctaggatcgatt Alignment from Pairagon GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG aagactcctggggtggttggtaatgcaattttcttttcattccttcctagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCTTCTGACTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtaagtcattgtggtattggcactcaaagcatacatagctaggatcgatt Alignment from Exonerate_protein2genome GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG aagactcctggggtggttggtaatgcaattttcttttcattccttcctagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCTTCTGACTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtaagtcattgtggtattggcactcaaagcatacatagctaggatcgatt Alignment from Exonerate_coding2genome GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG aagactcctggggtggttggtaatgcaattttcttttcattccttcctagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCTTCTGACTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtaagtcattgtggtattggcactcaaagcatacatagctaggatcgatt Alignment from GeneWise GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG aagactcctggggtggttggtaatgcaattttcttttcattccttcctagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCTTCTGACTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtaagtcattgtggtattggcactcaaagcatacatagctaggatcgatt #### Mark2_ID2104_17 --> 1 - 2 Original Alignment gAACCTGAATGAACCTGAAAGCAAAGACCGAGTGGAGACGCTCag tgtactgacacccagctaagactcagccatctttgtgctgtggtcatcaggAACCTGAAGGAACCTGAGAGCAAAGACCAGGTAGAGACTCTGcggtaggttgactggagcaagtccttgttactaggatcactgtttttttatc Alignment from CESAR gAACCTGAATGAACCTGAAAGCAAAGACCGAGTGGAGACGCTCag tgtactgacacccagctaagactcagccatctttgtgctgtggtcatcaggAACCTGAAGGAACCTGAGAGCAAAGACCAGGTAGAGACTCTGcggtaggttgactggagcaagtccttgttactaggatcactgtttttttatc Alignment from Spaln_aa2Genome GAACCTGAATGAACCTGAAAGCAAAGACCGAGTGGAGACGCTCAG tgtactgacacccagctaagactcagccatctttgtgctgtggtcatcagGAACCTGAAGGAACCTGAGAGCAAAGACCAGGTAGAGACTCTGCGgtaggttgactggagcaagtccttgttactaggatcactgtttttttatc Alignment from Spaln_nt2Genome GAACCTGAATGAACCTGAAAGCAAAGACCGAGTGGAGACGCTCAG tgtactgacacccagctaagactcagccatctttgtgctgtggtcatcagGAACCTGAAGGAACCTGAGAGCAAAGACCAGGTAGAGACTCTGCGgtaggttgactggagcaagtccttgttactaggatcactgtttttttatc Alignment from Pairagon GAACCTGAATGAACCTGAAAGCAAAGACCGAGTGGAGACGCTCAG tgtactgacacccagctaagactcagccatctttgtgctgtggtcatcagGAACCTGAAGGAACCTGAGAGCAAAGACCAGGTAGAGACTCTGCGgtaggttgactggagcaagtccttgttactaggatcactgtttttttatc Alignment from Exonerate_protein2genome GAACCTGAATGAACCTGAAAGCAAAGACCGAGTGGAGACGCTCAG tgtactgacacccagctaagactcagccatctttgtgctgtggtcatcagGAACCTGAAGGAACCTGAGAGCAAAGACCAGGTAGAGACTCTGCGgtaggttgactggagcaagtccttgttactaggatcactgtttttttatc Alignment from Exonerate_coding2genome GAACCTGAATGAACCTGAAAGCAAAGACCGAGTGGAGACGCTCAG tgtactgacacccagctaagactcagccatctttgtgctgtggtcatcagGAACCTGAAGGAACCTGAGAGCAAAGACCAGGTAGAGACTCTGCGgtaggttgactggagcaagtccttgttactaggatcactgtttttttatc Alignment from GeneWise GAACCTGAATGAACCTGAAAGCAAAGACCGAGTGGAGACGCTCAG tgtactgacacccagctaagactcagccatctttgtgctgtggtcatcagGAACCTGAAGGAACCTGAGAGCAAAGACCAGGTAGAGACTCTGCGgtaggttgactggagcaagtccttgttactaggatcactgtttttttatc #### Mark2_ID2110_11 --> 2 - 0 Original Alignment agTTGATGGTGTCAATGGGTTACACACGGGAAGAGATCCAGGACTCGCTGGTAGGCCAGAGGTACAACGAAGTGATGGCTACCTATCTGCTCCTTGGCTACAAGAGCTCTGAG gccacattgggagtcagtgttgtcccacttccctatttcaccccgaacagagTTGATGGTGTCAATGGGTTACACATGGGAAGAGATCCAGGACTCACTGGTAGGCCAGAGGTACAATGAGGTGATGGCTACCTATCTGCTTCTTGGATACAAGAGCTCTGAAgtgagtgttaggtgtttttgttctaagtagttaaggtgaactggaagttg Alignment from CESAR agTTGATGGTGTCAATGGGTTACACACGGGAAGAGATCCAGGACTCGCTGGTAGGCCAGAGGTACAACGAAGTGATGGCTACCTATCTGCTCCTTGGCTACAAGAGCTCTGAG gccacattgggagtcagtgttgtcccacttccctatttcaccccgaacagagTTGATGGTGTCAATGGGTTACACATGGGAAGAGATCCAGGACTCACTGGTAGGCCAGAGGTACAATGAGGTGATGGCTACCTATCTGCTTCTTGGATACAAGAGCTCTGAAgtgagtgttaggtgtttttgttctaagtagttaaggtgaactggaagttg Alignment from Spaln_aa2Genome AGTTGATGGTGTCAATGGGTTACACACGGGAAGAGATCCAGGACTCGCTGGTAGGCCAGAGGTACAACGAAGTGATGGCTACCTATCTGCTCCTTGGCTACAAGAGCTCTGAG gccacattgggagtcagtgttgtcccacttccctatttcaccccgaacagAGTTGATGGTGTCAATGGGTTACACATGGGAAGAGATCCAGGACTCACTGGTAGGCCAGAGGTACAATGAGGTGATGGCTACCTATCTGCTTCTTGGATACAAGAGCTCTGAAgtgagtgttaggtgtttttgttctaagtagttaaggtgaactggaagttg Alignment from Spaln_nt2Genome AGTTGATGGTGTCAATGGGTTACACACGGGAAGAGATCCAGGACTCGCTGGTAGGCCAGAGGTACAACGAAGTGATGGCTACCTATCTGCTCCTTGGCTACAAGAGCTCTGAG gccacattgggagtcagtgttgtcccacttccctatttcaccccgaacagAGTTGATGGTGTCAATGGGTTACACATGGGAAGAGATCCAGGACTCACTGGTAGGCCAGAGGTACAATGAGGTGATGGCTACCTATCTGCTTCTTGGATACAAGAGCTCTGAAgtgagtgttaggtgtttttgttctaagtagttaaggtgaactggaagttg Alignment from Pairagon AGTTGATGGTGTCAATGGGTTACACACGGGAAGAGATCCAGGACTCGCTGGTAGGCCAGAGGTACAACGAAGTGATGGCTACCTATCTGCTCCTTGGCTACAAGAGCTCTGAG gccacattgggagtcagtgttgtcccacttccctatttcaccccgaacagAGTTGATGGTGTCAATGGGTTACACATGGGAAGAGATCCAGGACTCACTGGTAGGCCAGAGGTACAATGAGGTGATGGCTACCTATCTGCTTCTTGGATACAAGAGCTCTGAAgtgagtgttaggtgtttttgttctaagtagttaaggtgaactggaagttg Alignment from Exonerate_protein2genome AGTTGATGGTGTCAATGGGTTACACACGGGAAGAGATCCAGGACTCGCTGGTAGGCCAGAGGTACAACGAAGTGATGGCTACCTATCTGCTCCTTGGCTACAAGAGCTCTGAG gccacattgggagtcagtgttgtcccacttccctatttcaccccgaacagAGTTGATGGTGTCAATGGGTTACACATGGGAAGAGATCCAGGACTCACTGGTAGGCCAGAGGTACAATGAGGTGATGGCTACCTATCTGCTTCTTGGATACAAGAGCTCTGAAgtgagtgttaggtgtttttgttctaagtagttaaggtgaactggaagttg Alignment from Exonerate_coding2genome AGTTGATGGTGTCAATGGGTTACACACGGGAAGAGATCCAGGACTCGCTGGTAGGCCAGAGGTACAACGAAGTGATGGCTACCTATCTGCTCCTTGGCTACAAGAGCTCTGAG gccacattgggagtcagtgttgtcccacttccctatttcaccccgaacagAGTTGATGGTGTCAATGGGTTACACATGGGAAGAGATCCAGGACTCACTGGTAGGCCAGAGGTACAATGAGGTGATGGCTACCTATCTGCTTCTTGGATACAAGAGCTCTGAAgtgagtgttaggtgtttttgttctaagtagttaaggtgaactggaagttg Alignment from GeneWise AGTTGATGGTGTCAATGGGTTACACACGGGAAGAGATCCAGGACTCGCTGGTAGGCCAGAGGTACAACGAAGTGATGGCTACCTATCTGCTCCTTGGCTACAAGAGCTCTGAG gccacattgggagtcagtgttgtcccacttccctatttcaccccgaacagAGTTGATGGTGTCAATGGGTTACACATGGGAAGAGATCCAGGACTCACTGGTAGGCCAGAGGTACAATGAGGTGATGGCTACCTATCTGCTTCTTGGATACAAGAGCTCTGAAgtgagtgttaggtgtttttgttctaagtagttaaggtgaactggaagttg #### Mark2_ID2112_9 --> 0 - 0 Original Alignment GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG ccttcttgcaataacttatatgtcagttaaagacaccgtctaaccctcagGAGCTACGGGAACGGGTGCTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACTGACTGTGAAAATCTACTTAAGAAATTCCTTATACTTAATCCTAGTAAAAGAGGCACTCTAGATgtagcaaacctgagatattagtcagcaaaggaaaataccaattagctctt Alignment from CESAR GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG ccttcttgcaataacttatatgtcagttaaagacaccgtctaaccctcagGAGCTACGGGAACGGGTGCTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACTGACTGTGAAAATCTACTTAAGAAATTCCTTATACTTAATCCTAGTAAAAGAGGCACTCTAGATgtagcaaacctgagatattagtcagcaaaggaaaataccaattagctctt Alignment from Spaln_aa2Genome GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAGCAA ccttcttgcaataacttatatgtcagttaaagacaccgtctaaccctcagGAGCTACGGGAACGGGTGCTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACTGACTGTGAAAATCTACTTAAGAAATTCCTTATACTTAATCCTAGTAAAAGAGGCACTCTAGATGTAgcaaacctgagatattagtcagcaaaggaaaataccaattagctctt Alignment from Spaln_nt2Genome GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG ccttcttgcaataacttatatgtcagttaaagacaccgtctaaccctcagGAGCTACGGGAACGGGTGCTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACTGACTGTGAAAATCTACTTAAGAAATTCCTTATACTTAATCCTAGTAAAAGAGGCACTCTAGATgtagcaaacctgagatattagtcagcaaaggaaaataccaattagctctt Alignment from Pairagon GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG ccttcttgcaataacttatatgtcagttaaagacaccgtctaaccctcagGAGCTACGGGAACGGGTGCTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACTGACTGTGAAAATCTACTTAAGAAATTCCTTATACTTAATCCTAGTAAAAGAGGCACTCTAGATgtagcaaacctgagatattagtcagcaaaggaaaataccaattagctctt Alignment from Exonerate_protein2genome GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAG ccttcttgcaataacttatatgtcagttaaagacaccgtctaaccctcagGAGCTACGGGAACGGGTGCTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACTGACTGTGAAAATCTACTTAAGAAATTCCTTATACTTAATCCTAGTAAAAGAGGCACTCTAGatgtagcaaacctgagatattagtcagcaaaggaaaataccaattagctctt Alignment from Exonerate_coding2genome GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAG ccttcttgcaataacttatatgtcagttaaagacaccgtctaaccctcagGAGCTACGGGAACGGGTGCTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACTGACTGTGAAAATCTACTTAAGAAATTCCTTATACTTAATCCTAGTAAAAGAGGCACTCTAGatgtagcaaacctgagatattagtcagcaaaggaaaataccaattagctctt Alignment from GeneWise GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG ccttcttgcaataacttatatgtcagttaaagacaccgtctaaccctcagGAGCTACGGGAACGGGTGCTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACTGACTGTGAAAATCTACTTAAGAAATTCCTTATACTTAATCCTAGTAAAAGAGGCACTCTAGATgtagcaaacctgagatattagtcagcaaaggaaaataccaattagctctt #### Mark2_ID2114_7 --> 0 - 0 Original Alignment ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG atgctctggtgtatcactctaatatgcttcctcatttctctttgccccagATAGTGTCTGCTGTGCAATACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAGgtaacagatgttcctatccccatgatctgctgtgagtgggccaggtggcc Alignment from CESAR ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG atgctctggtgtatcactctaatatgcttcctcatttctctttgccccagATAGTGTCTGCTGTGCAATACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAGgtaacagatgttcctatccccatgatctgctgtgagtgggccaggtggcc Alignment from Spaln_aa2Genome ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG atgctctggtgtatcactctaatatgcttcctcatttctctttgccccagATAGTGTCTGCTGTGCAATACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAGgtaacagatgttcctatccccatgatctgctgtgagtgggccaggtggcc Alignment from Spaln_nt2Genome ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG atgctctggtgtatcactctaatatgcttcctcatttctctttgccccagATAGTGTCTGCTGTGCAATACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAGgtaacagatgttcctatccccatgatctgctgtgagtgggccaggtggcc Alignment from Pairagon ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG atgctctggtgtatcactctaatatgcttcctcatttctctttgccccagATAGTGTCTGCTGTGCAATACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAGgtaacagatgttcctatccccatgatctgctgtgagtgggccaggtggcc Alignment from Exonerate_protein2genome ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG atgctctggtgtatcactctaatatgcttcctcatttctctttgccccagATAGTGTCTGCTGTGCAATACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAGgtaacagatgttcctatccccatgatctgctgtgagtgggccaggtggcc Alignment from Exonerate_coding2genome ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG atgctctggtgtatcactctaatatgcttcctcatttctctttgccccagATAGTGTCTGCTGTGCAATACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAGgtaacagatgttcctatccccatgatctgctgtgagtgggccaggtggcc Alignment from GeneWise ATAGTGTCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG atgctctggtgtatcactctaatatgcttcctcatttctctttgccccagATAGTGTCTGCTGTGCAATACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAGgtaacagatgttcctatccccatgatctgctgtgagtgggccaggtggcc #### Mark2_ID2119_3 --> 0 - 0 Original Alignment GTAGCTGTGAAGATCATCGACAAGACCCAGCTGAACTCCTCCAGCCTACAGAAA cggaacctttagtggcattttgctttgtgattcttccatttgggtcgtagGTAGCTGTGAAGATCATCGATAAGACCCAGCTAAACACCTCCAGCCTACAGAAAgtgagttctttgtctatgcatccttcatcttgaaggaagaatccccacta Alignment from CESAR GTAGCTGTGAAGATCATCGACAAGACCCAGCTGAACTCCTCCAGCCTACAGAAA cggaacctttagtggcattttgctttgtgattcttccatttgggtcgtagGTAGCTGTGAAGATCATCGATAAGACCCAGCTAAACACCTCCAGCCTACAGAAAgtgagttctttgtctatgcatccttcatcttgaaggaagaatccccacta Alignment from Spaln_aa2Genome GTAGCTGTGAAGATCATCGACAAGACCCAGCTGAACTCCTCCAGCCTACAGAAA cggaacctttagtggcattttgctttgtgattcttccatttgggtcgtagGTAGCTGTGAAGATCATCGATAAGACCCAGCTAAACACCTCCAGCCTACAGAAAgtgagttctttgtctatgcatccttcatcttgaaggaagaatccccacta Alignment from Spaln_nt2Genome GTAGCTGTGAAGATCATCGACAAGACCCAGCTGAACTCCTCCAGCCTACAGAAA cggaacctttagtggcattttgctttgtgattcttccatttgggtcgtagGTAGCTGTGAAGATCATCGATAAGACCCAGCTAAACACCTCCAGCCTACAGAAAgtgagttctttgtctatgcatccttcatcttgaaggaagaatccccacta Alignment from Pairagon GTAGCTGTGAAGATCATCGACAAGACCCAGCTGAACTCCTCCAGCCTACAGAAA cggaacctttagtggcattttgctttgtgattcttccatttgggtcgtagGTAGCTGTGAAGATCATCGATAAGACCCAGCTAAACACCTCCAGCCTACAGAAAgtgagttctttgtctatgcatccttcatcttgaaggaagaatccccacta Alignment from Exonerate_protein2genome GTAGCTGTGAAGATCATCGACAAGACCCAGCTGAACTCCTCCAGCCTACAGAAA cggaacctttagtggcattttgctttgtgattcttccatttgggtcgtagGTAGCTGTGAAGATCATCGATAAGACCCAGCTAAACACCTCCAGCCTACAGAAAgtgagttctttgtctatgcatccttcatcttgaaggaagaatccccacta Alignment from Exonerate_coding2genome GTAGCTGTGAAGATCATCGACAAGACCCAGCTGAACTCCTCCAGCCTACAGAAA cggaacctttagtggcattttgctttgtgattcttccatttgggtcgtagGTAGCTGTGAAGATCATCGATAAGACCCAGCTAAACACCTCCAGCCTACAGAAAgtgagttctttgtctatgcatccttcatcttgaaggaagaatccccacta Alignment from GeneWise GTAGCTGTGAAGATCATCGACAAGACCCAGCTGAACTCCTCCAGCCTACAGAAA cggaacctttagtggcattttgctttgtgattcttccatttgggtcgtagGTAGCTGTGAAGATCATCGATAAGACCCAGCTAAACACCTCCAGCCTACAGAAAgtgagttctttgtctatgcatccttcatcttgaaggaagaatccccacta #### Mbl2_ID6424_3 --> 2 - 1 Original Alignment aaTTTGATACTAGCGAAATTGATTCAGAAATTGCAGCCCTACGATCAGAGCTGAGAGCCCTGAGAAACt acgtattggaactccagtatgggtctgggctccactcccttggaccacagaaTTTGATACGAGTGAAATTGATTCAGAAATTGCAGCCCTACGGTCAGAACTGAGAGCCCTGAGAAACtgtgatatttcacactaggggtttttactactctcaagagtatgtataatt Alignment from CESAR aaTTTGATACTAGCGAAATTGATTCAGAAATTGCAGCCCTACGATCAGAGCTGAGAGCCCTGAGAAACt acgtattggaactccagtatgggtctgggctccactcccttggaccacagaaTTTGATACGAGTGAAATTGATTCAGAAATTGCAGCCCTACGGTCAGAACTGAGAGCCCTGAGAAACtgtgatatttcacactaggggtttttactactctcaagagtatgtataatt Alignment from Spaln_aa2Genome AATTTGATACTAGCGAAATTGATTCAGAAATTGCAGCCCTACGATCAGAGCTGAGAGCCCTGAGAAACT acgtattggaactccagtatgggtctgggctccactcccttggaccacagAATTTGATACGAGTGAAATTGATTCAGAAATTGCAGCCCTACGGTCAGAACTGAGAGCCCTGAGAAACTgtgatatttcacactaggggtttttactactctcaagagtatgtataatt Alignment from Spaln_nt2Genome AATTTGATACTAGCGAAATTGATTCAGAAATTGCAGCCCTACGATCAGAGCTGAGAGCCCTGAGAAACT acgtattggaactccagtatgggtctgggctccactcccttggaccacagAATTTGATACGAGTGAAATTGATTCAGAAATTGCAGCCCTACGGTCAGAACTGAGAGCCCTGAGAAACTgtgatatttcacactaggggtttttactactctcaagagtatgtataatt Alignment from Pairagon AATTTGATACTAGCGAAATTGATTCAGAAATTGCAGCCCTACGATCAGAGCTGAGAGCCCTGAGAAACT acgtattggaactccagtatgggtctgggctccactcccttggaccacagAATTTGATACGAGTGAAATTGATTCAGAAATTGCAGCCCTACGGTCAGAACTGAGAGCCCTGAGAAACTgtgatatttcacactaggggtttttactactctcaagagtatgtataatt Alignment from Exonerate_protein2genome AATTTGATACTAGCGAAATTGATTCAGAAATTGCAGCCCTACGATCAGAGCTGAGAGCCCTGAGAAACT acgtattggaactccagtatgggtctgggctccactcccttggaccacagAATTTGATACGAGTGAAATTGATTCAGAAATTGCAGCCCTACGGTCAGAACTGAGAGCCCTGAGAAACTgtgatatttcacactaggggtttttactactctcaagagtatgtataatt Alignment from Exonerate_coding2genome AATTTGATACTAGCGAAATTGATTCAGAAATTGCAGCCCTACGATCAGAGCTGAGAGCCCTGAGAAACT acgtattggaactccagtatgggtctgggctccactcccttggaccacagAATTTGATACGAGTGAAATTGATTCAGAAATTGCAGCCCTACGGTCAGAACTGAGAGCCCTGAGAAACTgtgatatttcacactaggggtttttactactctcaagagtatgtataatt Alignment from GeneWise AATTTGATACTAGCGAAATTGATTCAGAAATTGCAGCCCTACGATCAGAGCTGAGAGCCCTGAGAAACT acgtattggaactccagtatgggtctgggctccactcccttggaccacagAATTTGATACGAGTGAAATTGATTCAGAAATTGCAGCCCTACGGTCAGAACTGAGAGCCCTGAGAAACTgtgatatttcacactaggggtttttactactctcaagagtatgtataatt #### Mgea5_ID9583_15 --> 0 - 1 Original Alignment AAAATAATGTTGAGTTTCCATGAAGAGCAGGAGGTGTTGCCAGAAACTTTCCTTGCCAACTTCCCTTCTCTGATAAAAATGGATATTCATAAAAAAGTGACTGACCCGAGTGTTGCCAAAAGCATGATGGCTTGCCTCCTGTCTTCACTGAAGGCCAATg atactggctgtaagtgggtgcaaggtcaactggtttgacccttttcacagAAAATAATGTTGAGTTTCCATGAAGAGCAGGAGGTCTTGCCAGAAACATTCCTTGCAAACTTCCCGTCTCTGATAAAAATGGATATTCATAAAAAAGTGACTGACCCAAGTGTTGCCAAAAGCACAATGGCTTGCCTTCTTGCTTCACTAAAAGCTAATggtaagtataagttgagttatacaatgttaaaagcactgagtgccatgcct Alignment from CESAR AAAATAATGTTGAGTTTCCATGAAGAGCAGGAGGTGTTGCCAGAAACTTTCCTTGCCAACTTCCCTTCTCTGATAAAAATGGATATTCATAAAAAAGTGACTGACCCGAGTGTTGCCAAAAGCATGATGGCTTGCCTCCTGTCTTCACTGAAGGCCAATg atactggctgtaagtgggtgcaaggtcaactggtttgacccttttcacagAAAATAATGTTGAGTTTCCATGAAGAGCAGGAGGTCTTGCCAGAAACATTCCTTGCAAACTTCCCGTCTCTGATAAAAATGGATATTCATAAAAAAGTGACTGACCCAAGTGTTGCCAAAAGCACAATGGCTTGCCTTCTTGCTTCACTAAAAGCTAATggtaagtataagttgagttatacaatgttaaaagcactgagtgccatgcct Alignment from Spaln_aa2Genome AAAATAATGTTGAGTTTCCATGAAGAGCAGGAGGTGTTGCCAGAAACTTTCCTTGCCAACTTCCCTTCTCTGATAAAAATGGATATTCATAAAAAAGTGACTGACCCGAGTGTTGCCAAAAGCATGATGGCTTGCCTCCTGTCTTCACTGAAGGCCAATG atactggctgtaagtgggtgcaaggtcaactggtttgacccttttcacagAAAATAATGTTGAGTTTCCATGAAGAGCAGGAGGTCTTGCCAGAAACATTCCTTGCAAACTTCCCGTCTCTGATAAAAATGGATATTCATAAAAAAGTGACTGACCCAAGTGTTGCCAAAAGCACAATGGCTTGCCTTCTTGCTTCACTAAAAGCTAATGgtaagtataagttgagttatacaatgttaaaagcactgagtgccatgcct Alignment from Spaln_nt2Genome AAAATAATGTTGAGTTTCCATGAAGAGCAGGAGGTGTTGCCAGAAACTTTCCTTGCCAACTTCCCTTCTCTGATAAAAATGGATATTCATAAAAAAGTGACTGACCCGAGTGTTGCCAAAAGCATGATGGCTTGCCTCCTGTCTTCACTGAAGGCCAATG atactggctgtaagtgggtgcaaggtcaactggtttgacccttttcacagAAAATAATGTTGAGTTTCCATGAAGAGCAGGAGGTCTTGCCAGAAACATTCCTTGCAAACTTCCCGTCTCTGATAAAAATGGATATTCATAAAAAAGTGACTGACCCAAGTGTTGCCAAAAGCACAATGGCTTGCCTTCTTGCTTCACTAAAAGCTAATGgtaagtataagttgagttatacaatgttaaaagcactgagtgccatgcct Alignment from Pairagon AAAATAATGTTGAGTTTCCATGAAGAGCAGGAGGTGTTGCCAGAAACTTTCCTTGCCAACTTCCCTTCTCTGATAAAAATGGATATTCATAAAAAAGTGACTGACCCGAGTGTTGCCAAAAGCATGATGGCTTGCCTCCTGTCTTCACTGAAGGCCAATG atactggctgtaagtgggtgcaaggtcaactggtttgacccttttcacagAAAATAATGTTGAGTTTCCATGAAGAGCAGGAGGTCTTGCCAGAAACATTCCTTGCAAACTTCCCGTCTCTGATAAAAATGGATATTCATAAAAAAGTGACTGACCCAAGTGTTGCCAAAAGCACAATGGCTTGCCTTCTTGCTTCACTAAAAGCTAATGgtaagtataagttgagttatacaatgttaaaagcactgagtgccatgcct Alignment from Exonerate_protein2genome AAAATAATGTTGAGTTTCCATGAAGAGCAGGAGGTGTTGCCAGAAACTTTCCTTGCCAACTTCCCTTCTCTGATAAAAATGGATATTCATAAAAAAGTGACTGACCCGAGTGTTGCCAAAAGCATGATGGCTTGCCTCCTGTCTTCACTGAAGGCCAATG atactggctgtaagtgggtgcaaggtcaactggtttgacccttttcacagAAAATAATGTTGAGTTTCCATGAAGAGCAGGAGGTCTTGCCAGAAACATTCCTTGCAAACTTCCCGTCTCTGATAAAAATGGATATTCATAAAAAAGTGACTGACCCAAGTGTTGCCAAAAGCACAATGGCTTGCCTTCTTGCTTCACTAAAAGCTAATGgtaagtataagttgagttatacaatgttaaaagcactgagtgccatgcct Alignment from Exonerate_coding2genome AAAATAATGTTGAGTTTCCATGAAGAGCAGGAGGTGTTGCCAGAAACTTTCCTTGCCAACTTCCCTTCTCTGATAAAAATGGATATTCATAAAAAAGTGACTGACCCGAGTGTTGCCAAAAGCATGATGGCTTGCCTCCTGTCTTCACTGAAGGCCAATG atactggctgtaagtgggtgcaaggtcaactggtttgacccttttcacagAAAATAATGTTGAGTTTCCATGAAGAGCAGGAGGTCTTGCCAGAAACATTCCTTGCAAACTTCCCGTCTCTGATAAAAATGGATATTCATAAAAAAGTGACTGACCCAAGTGTTGCCAAAAGCACAATGGCTTGCCTTCTTGCTTCACTAAAAGCTAATGgtaagtataagttgagttatacaatgttaaaagcactgagtgccatgcct Alignment from GeneWise AAAATAATGTTGAGTTTCCATGAAGAGCAGGAGGTGTTGCCAGAAACTTTCCTTGCCAACTTCCCTTCTCTGATAAAAATGGATATTCATAAAAAAGTGACTGACCCGAGTGTTGCCAAAAGCATGATGGCTTGCCTCCTGTCTTCACTGAAGGCCAATG atactggctgtaagtgggtgcaaggtcaactggtttgacccttttcacagAAAATAATGTTGAGTTTCCATGAAGAGCAGGAGGTCTTGCCAGAAACATTCCTTGCAAACTTCCCGTCTCTGATAAAAATGGATATTCATAAAAAAGTGACTGACCCAAGTGTTGCCAAAAGCACAATGGCTTGCCTTCTTGCTTCACTAAAAGCTAATGgtaagtataagttgagttatacaatgttaaaagcactgagtgccatgcct #### Mrpl11_ID768_3 --> 0 - 1 Original Alignment CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAg tctgactggcaatgaactgagtaaattcggacacactggcttttctttagCCTGACAGGCCTTTGGAACTCAAT---------------GTCTCCTACTTGCTTAAGGCAGCTTCTGGCATTGAGAAGGGAGCCCGGCATACAggtaagtgttctggcagccatatgaggcaaggaatcaagagaccaaatggc Alignment from CESAR CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAg tctgactggcaatgaactgagtaaattcggacacactggcttttctttagCCTGACAGGCCTTTGGAACTC---------------AATGTCTCCTACTTGCTTAAGGCAGCTTCTGGCATTGAGAAGGGAGCCCGGCATACAggtaagtgttctggcagccatatgaggcaaggaatcaagagaccaaatggc Alignment from Spaln_aa2Genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG tctgactggcaatgaactgagtaaattcggacacactggcttttctttagCCTGACAGGCCTTTGGAACTCAAT---------------GTCTCCTACTTGCTTAAGGCAGCTTCTGGCATTGAGAAGGGAGCCCGGCATACAGgtaagtgttctggcagccatatgaggcaaggaatcaagagaccaaatggc Alignment from Spaln_nt2Genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG tctgactggcaatgaactgagtaaattcggacacactggcttttctttagCCTGACAGGCCTTTGGAACTCAA---------------TGTCTCCTACTTGCTTAAGGCAGCTTCTGGCATTGAGAAGGGAGCCCGGCATACAGgtaagtgttctggcagccatatgaggcaaggaatcaagagaccaaatggc Alignment from Pairagon CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG tctgactggcaatgaactgagtaaattcggacacactggcttttctttagCCTGACAGGCCTTTGGAACTCAA---------------TGTCTCCTACTTGCTTAAGGCAGCTTCTGGCATTGAGAAGGGAGCCCGGCATACAGgtaagtgttctggcagccatatgaggcaaggaatcaagagaccaaatggc Alignment from Exonerate_protein2genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG tctgactggcaatgaactgagtaaattcggacacactggcttttctttagCCTGACAGGCCTTTGGAACTC---------------AATGTCTCCTACTTGCTTAAGGCAGCTTCTGGCATTGAGAAGGGAGCCCGGCATACAGgtaagtgttctggcagccatatgaggcaaggaatcaagagaccaaatggc Alignment from Exonerate_coding2genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG tctgactggcaatgaactgagtaaattcggacacactggcttttctttagCCTGACAGGCCTTTGGAACTC---------------AATGTCTCCTACTTGCTTAAGGCAGCTTCTGGCATTGAGAAGGGAGCCCGGCATACAGgtaagtgttctggcagccatatgaggcaaggaatcaagagaccaaatggc Alignment from GeneWise CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAGGGAAAG tctgactggcaatgaactgagtaaattcggacacactggcttttctttagCCTGACAGGCCTTTGGAACTC---------------AATGTCTCCTACTTGCTTAAGGCAGCTTCTGGCATTGAGAAGGGAGCCCGGCATACAGGTAAGTgttctggcagccatatgaggcaaggaatcaagagaccaaatggc #### Mrpl16_ID3289_2 --> 2 - 1 Original Alignment atTCTTGGGCAGCCCTTCCCACCAGTGCTGGTCTGAAGACGCTCCTCCCAGTTCCAACTTTTGAAa agggatctgagctcctatacacctcaagcacagtgagtatgttgtttcagatGCT---GCAACCCTTCCCACCAGTGCTGGCCTGAAAACTCTCTTCCCTGTTCCAACATATGAAagtgagttgtaccctggagattactacataactccagataggccacatata Alignment from CESAR atTCTTGGGCAGCCCTTCCCACCAGTGCTGGTCTGAAGACGCTCCTCCCAGTTCCAACTTTTGAAa agggatctgagctcctatacacctcaagcacagtgagtatgttgtttcagatGCT---GCAACCCTTCCCACCAGTGCTGGCCTGAAAACTCTCTTCCCTGTTCCAACATATGAAagtgagttgtaccctggagattactacataactccagataggccacatata Alignment from Spaln_aa2Genome ATTCTTGGGCAGCCCTTCCCACCAGTGCTGGTCTGAAGACGCTCCTCCCAGTTCCAACTTTTGAAA agggatctgagctcctatacacctcaagcacagtgagtatgttgtttcagATGCT---GCAACCCTTCCCACCAGTGCTGGCCTGAAAACTCTCTTCCCTGTTCCAACATATGAAAgtgagttgtaccctggagattactacataactccagataggccacatata Alignment from Spaln_nt2Genome ATTCTTGGGCAGCCCTTCCCACCAGTGCTGGTCTGAAGACGCTCCTCCCAGTTCCAACTTTTGAAA agggatctgagctcctatacacctcaagcacagtgagtatgttgtttcagATGCT---GCAACCCTTCCCACCAGTGCTGGCCTGAAAACTCTCTTCCCTGTTCCAACATATGAAAgtgagttgtaccctggagattactacataactccagataggccacatata Alignment from Pairagon ATTCTTGGGCAGCCCTTCCCACCAGTGCTGGTCTGAAGACGCTCCTCCCAGTTCCAACTTTTGAAA agggatctgagctcctatacacctcaagcacagtgagtatgttgtttcagATGCT---GCAACCCTTCCCACCAGTGCTGGCCTGAAAACTCTCTTCCCTGTTCCAACATATGAAAgtgagttgtaccctggagattactacataactccagataggccacatata Alignment from Exonerate_protein2genome ATTCTTGGGCAGCCCTTCCCACCAGTGCTGGTCTGAAGACGCTCCTCCCAGTTCCAACTTTTGAAA agggatctgagctcctatacacctcaagcacagtgagtatgttgtttcagATGCT---GCAACCCTTCCCACCAGTGCTGGCCTGAAAACTCTCTTCCCTGTTCCAACATATGAAAgtgagttgtaccctggagattactacataactccagataggccacatata Alignment from Exonerate_coding2genome GCAGCCCTTCCCACCAGTGCTGGTCTGAAGACGCTCCTCCCAGTTCCAACTTTTGAAA agggatctgagctcctatacacctcaagcacagtgagtatgttgtttcagatgctGCAACCCTTCCCACCAGTGCTGGCCTGAAAACTCTCTTCCCTGTTCCAACATATGAAAgtgagttgtaccctggagattactacataactccagataggccacatata Alignment from GeneWise ATTCTTGGGCAGCCCTTCCCACCAGTGCTGGTCTGAAGACGCTCCTCCCAGTTCCAACTTTTGAAA agggatctgagctcctatacacctcaagcacagtgagtatgttgtttcagATGCT---GCAACCCTTCCCACCAGTGCTGGCCTGAAAACTCTCTTCCCTGTTCCAACATATGAAAgtgagttgtaccctggagattactacataactccagataggccacatata #### Ms4a10_ID3081_6 --> 0 - 1 Original Alignment GACAAGGATGACACCCCTTTCGTTCCTGACACACCTATGGAACTTAAAGGTCTATCGCTGGGGCCACCACCATCCTATAAAGATGTGGCCCAAg ggacgtaattgttggctaggccaacagcccctctctttctcttctaacagGTCAAGGGTGACACCCCCTTTGTTCCTGACACTCCAATGGAGCTAAAGGGTCTGTCACTGGGGCCACCACCATCCTATAAAGATGTGGCTCAAggtagcccatggcatatacaacctaacagttgggcaggtcaacattcctgg Alignment from CESAR GACAAGGATGACACCCCTTTCGTTCCTGACACACCTATGGAACTTAAAGGTCTATCGCTGGGGCCACCACCATCCTATAAAGATGTGGCCCAAg ggacgtaattgttggctaggccaacagcccctctctttctcttctaacagGTCAAGGGTGACACCCCCTTTGTTCCTGACACTCCAATGGAGCTAAAGGGTCTGTCACTGGGGCCACCACCATCCTATAAAGATGTGGCTCAAggtagcccatggcatatacaacctaacagttgggcaggtcaacattcctgg Alignment from Spaln_aa2Genome GACAAGGATGACACCCCTTTCGTTCCTGACACACCTATGGAACTTAAAGGTCTATCGCTGGGGCCACCACCATCCTATAAAGATGTGGCCCAAG ggacgtaattgttggctaggccaacagcccctctctttctcttctaacagGTCAAGGGTGACACCCCCTTTGTTCCTGACACTCCAATGGAGCTAAAGGGTCTGTCACTGGGGCCACCACCATCCTATAAAGATGTGGCTCAAGgtagcccatggcatatacaacctaacagttgggcaggtcaacattcctgg Alignment from Spaln_nt2Genome GACAAGGATGACACCCCTTTCGTTCCTGACACACCTATGGAACTTAAAGGTCTATCGCTGGGGCCACCACCATCCTATAAAGATGTGGCCCAAG ggacgtaattgttggctaggccaacagcccctctctttctcttctaacagGTCAAGGGTGACACCCCCTTTGTTCCTGACACTCCAATGGAGCTAAAGGGTCTGTCACTGGGGCCACCACCATCCTATAAAGATGTGGCTCAAGgtagcccatggcatatacaacctaacagttgggcaggtcaacattcctgg Alignment from Pairagon GACAAGGATGACACCCCTTTCGTTCCTGACACACCTATGGAACTTAAAGGTCTATCGCTGGGGCCACCACCATCCTATAAAGATGTGGCCCAAG ggacgtaattgttggctaggccaacagcccctctctttctcttctaacagGTCAAGGGTGACACCCCCTTTGTTCCTGACACTCCAATGGAGCTAAAGGGTCTGTCACTGGGGCCACCACCATCCTATAAAGATGTGGCTCAAGgtagcccatggcatatacaacctaacagttgggcaggtcaacattcctgg Alignment from Exonerate_protein2genome GACAAGGATGACACCCCTTTCGTTCCTGACACACCTATGGAACTTAAAGGTCTATCGCTGGGGCCACCACCATCCTATAAAGATGTGGCCCAAG ggacgtaattgttggctaggccaacagcccctctctttctcttctaacagGTCAAGGGTGACACCCCCTTTGTTCCTGACACTCCAATGGAGCTAAAGGGTCTGTCACTGGGGCCACCACCATCCTATAAAGATGTGGCTCAAGgtagcccatggcatatacaacctaacagttgggcaggtcaacattcctgg Alignment from Exonerate_coding2genome GACAAGGATGACACCCCTTTCGTTCCTGACACACCTATGGAACTTAAAGGTCTATCGCTGGGGCCACCACCATCCTATAAAGATGTGGCCCAAG ggacgtaattgttggctaggccaacagcccctctctttctcttctaacagGTCAAGGGTGACACCCCCTTTGTTCCTGACACTCCAATGGAGCTAAAGGGTCTGTCACTGGGGCCACCACCATCCTATAAAGATGTGGCTCAAGgtagcccatggcatatacaacctaacagttgggcaggtcaacattcctgg Alignment from GeneWise GACAAGGATGACACCCCTTTCGTTCCTGACACACCTATGGAACTTAAAGGTCTATCGCTGGGGCCACCACCATCCTATAAAGATGTGGCCCAAG ggacgtaattgttggctaggccaacagcccctctctttctcttctaacagGTCAAGGGTGACACCCCCTTTGTTCCTGACACTCCAATGGAGCTAAAGGGTCTGTCACTGGGGCCACCACCATCCTATAAAGATGTGGCTCAAGgtagcccatggcatatacaacctaacagttgggcaggtcaacattcctgg #### Ms4a10_ID3084_3 --> 0 - 0 Original Alignment TTTCTCGTTGCAGGGATGGCGGCCATGACAACAGTGACATTCCCTAAGACCTCTCTG agaaccctgtcacttggtggtgtaggaagggctccttttcttccttctagTTTCTTGTTGCAGGGATGGTAGTCATGACAACAGTAACATTCCCAAAGACCTCGCTAgtaagttggtgagcaccaaacggaacatgagactataaatagggagaaga Alignment from CESAR TTTCTCGTTGCAGGGATGGCGGCCATGACAACAGTGACATTCCCTAAGACCTCTCTG agaaccctgtcacttggtggtgtaggaagggctccttttcttccttctagTTTCTTGTTGCAGGGATGGTAGTCATGACAACAGTAACATTCCCAAAGACCTCGCTAgtaagttggtgagcaccaaacggaacatgagactataaatagggagaaga Alignment from Spaln_aa2Genome TTTCTCGTTGCAGGGATGGCGGCCATGACAACAGTGACATTCCCTAAGACCTCTCTG agaaccctgtcacttggtggtgtaggaagggctccttttcttccttctagTTTCTTGTTGCAGGGATGGTAGTCATGACAACAGTAACATTCCCAAAGACCTCGCTAgtaagttggtgagcaccaaacggaacatgagactataaatagggagaaga Alignment from Spaln_nt2Genome TTTCTCGTTGCAGGGATGGCGGCCATGACAACAGTGACATTCCCTAAGACCTCTCTG agaaccctgtcacttggtggtgtaggaagggctccttttcttccttctagTTTCTTGTTGCAGGGATGGTAGTCATGACAACAGTAACATTCCCAAAGACCTCGCTAgtaagttggtgagcaccaaacggaacatgagactataaatagggagaaga Alignment from Pairagon TTTCTCGTTGCAGGGATGGCGGCCATGACAACAGTGACATTCCCTAAGACCTCTCTG agaaccctgtcacttggtggtgtaggaagggctccttttcttccttctagTTTCTTGTTGCAGGGATGGTAGTCATGACAACAGTAACATTCCCAAAGACCTCGCTAgtaagttggtgagcaccaaacggaacatgagactataaatagggagaaga Alignment from Exonerate_protein2genome TTTCTCGTTGCAGGGATGGCGGCCATGACAACAGTGACATTCCCTAAGACCTCTCTG agaaccctgtcacttggtggtgtaggaagggctccttttcttccttctagTTTCTTGTTGCAGGGATGGTAGTCATGACAACAGTAACATTCCCAAAGACCTCGCTAgtaagttggtgagcaccaaacggaacatgagactataaatagggagaaga Alignment from Exonerate_coding2genome TTTCTCGTTGCAGGGATGGCGGCCATGACAACAGTGACATTCCCTAAGACCTCTCTG agaaccctgtcacttggtggtgtaggaagggctccttttcttccttctagTTTCTTGTTGCAGGGATGGTAGTCATGACAACAGTAACATTCCCAAAGACCTCGCTAgtaagttggtgagcaccaaacggaacatgagactataaatagggagaaga Alignment from GeneWise TTTCTCGTTGCAGGGATGGCGGCCATGACAACAGTGACATTCCCTAAGACCTCTCTG agaaccctgtcacttggtggtgtaggaagggctccttttcttccttctagTTTCTTGTTGCAGGGATGGTAGTCATGACAACAGTAACATTCCCAAAGACCTCGCTAgtaagttggtgagcaccaaacggaacatgagactataaatagggagaaga #### Ms4a13_ID3141_6 --> 0 - 0 Original Alignment CCCTTAAGTTCAATTGTGAAGTCATTGGTGAGGAAAACTTGGAGGCTCAGCAGCCTTGCTGCTTGGAGACAGATGATTTGGCTTGAG gctgcttattcttagccagggctttgccctttctcatttatttttaatagCCATTATGCTCAATGGTGAAGTCTCTGGTTAGGAAAACTTGGAAGCTCAGCAGCCTGGCTGCATGGAGACAAATGATATGGCTTGAGgtattcgtcaactgtctcttgatggggatgacttggggcagaagattgag Alignment from CESAR CCCTTAAGTTCAATTGTGAAGTCATTGGTGAGGAAAACTTGGAGGCTCAGCAGCCTTGCTGCTTGGAGACAGATGATTTGGCTTGAG gctgcttattcttagccagggctttgccctttctcatttatttttaatagCCATTATGCTCAATGGTGAAGTCTCTGGTTAGGAAAACTTGGAAGCTCAGCAGCCTGGCTGCATGGAGACAAATGATATGGCTTGAGgtattcgtcaactgtctcttgatggggatgacttggggcagaagattgag Alignment from Spaln_aa2Genome CCCTTAAGTTCAATTGTGAAGTCATTGGTGAGGAAAACTTGGAGGCTCAGCAGCCTTGCTGCTTGGAGACAGATGATTTGGCTTGAG gctgcttattcttagccagggctttgccctttctcatttatttttaatagCCATTATGCTCAATGGTGAAGTCTCTGGTTAGGAAAACTTGGAAGCTCAGCAGCCTGGCTGCATGGAGACAAATGATATGGCTTGAGgtattcgtcaactgtctcttgatggggatgacttggggcagaagattgag Alignment from Spaln_nt2Genome CCCTTAAGTTCAATTGTGAAGTCATTGGTGAGGAAAACTTGGAGGCTCAGCAGCCTTGCTGCTTGGAGACAGATGATTTGGCTTGAG gctgcttattcttagccagggctttgccctttctcatttatttttaatagCCATTATGCTCAATGGTGAAGTCTCTGGTTAGGAAAACTTGGAAGCTCAGCAGCCTGGCTGCATGGAGACAAATGATATGGCTTGAGgtattcgtcaactgtctcttgatggggatgacttggggcagaagattgag Alignment from Pairagon CCCTTAAGTTCAATTGTGAAGTCATTGGTGAGGAAAACTTGGAGGCTCAGCAGCCTTGCTGCTTGGAGACAGATGATTTGGCTTGAG gctgcttattcttagccagggctttgccctttctcatttatttttaatagCCATTATGCTCAATGGTGAAGTCTCTGGTTAGGAAAACTTGGAAGCTCAGCAGCCTGGCTGCATGGAGACAAATGATATGGCTTGAGgtattcgtcaactgtctcttgatggggatgacttggggcagaagattgag Alignment from Exonerate_protein2genome CCCTTAAGTTCAATTGTGAAGTCATTGGTGAGGAAAACTTGGAGGCTCAGCAGCCTTGCTGCTTGGAGACAGATGATTTGGCTTGAG gctgcttattcttagccagggctttgccctttctcatttatttttaatagCCATTATGCTCAATGGTGAAGTCTCTGGTTAGGAAAACTTGGAAGCTCAGCAGCCTGGCTGCATGGAGACAAATGATATGGCTTGAGgtattcgtcaactgtctcttgatggggatgacttggggcagaagattgag Alignment from Exonerate_coding2genome CCCTTAAGTTCAATTGTGAAGTCATTGGTGAGGAAAACTTGGAGGCTCAGCAGCCTTGCTGCTTGGAGACAGATGATTTGGCTTGAG gctgcttattcttagccagggctttgccctttctcatttatttttaatagCCATTATGCTCAATGGTGAAGTCTCTGGTTAGGAAAACTTGGAAGCTCAGCAGCCTGGCTGCATGGAGACAAATGATATGGCTTGAGgtattcgtcaactgtctcttgatggggatgacttggggcagaagattgag Alignment from GeneWise CCCTTAAGTTCAATTGTGAAGTCATTGGTGAGGAAAACTTGGAGGCTCAGCAGCCTTGCTGCTTGGAGACAGATGATTTGGCTTGAG gctgcttattcttagccagggctttgccctttctcatttatttttaatagCCATTATGCTCAATGGTGAAGTCTCTGGTTAGGAAAACTTGGAAGCTCAGCAGCCTGGCTGCATGGAGACAAATGATATGGCTTGAGgtattcgtcaactgtctcttgatggggatgacttggggcagaagattgag #### Ms4a13_ID3142_5 --> 0 - 0 Original Alignment AAGCTGGGAAGGGAAGTGTCCCGTGTTTTGTTGTGCTCCTACCCCCTGGAATTCGCCATTGCCCTCTTGTACTCAATCTCTAGTTGTGCATATTTG tcccctaatggttcatgtttggttcacccttgtccttcccctgcctccagAAATTAGGCAGGGAAGTGTCACATGATTTGTTGTGCTCCCACCCTCTGGAGTCTGCCATGGCACTCTTATACACCATCTCCAGTTGTGCATATCTGgtacagtggggctgagtaattcaagggctgtgctcccttgatagacctgg Alignment from CESAR AAGCTGGGAAGGGAAGTGTCCCGTGTTTTGTTGTGCTCCTACCCCCTGGAATTCGCCATTGCCCTCTTGTACTCAATCTCTAGTTGTGCATATTTG tcccctaatggttcatgtttggttcacccttgtccttcccctgcctccagAAATTAGGCAGGGAAGTGTCACATGATTTGTTGTGCTCCCACCCTCTGGAGTCTGCCATGGCACTCTTATACACCATCTCCAGTTGTGCATATCTGgtacagtggggctgagtaattcaagggctgtgctcccttgatagacctgg Alignment from Spaln_aa2Genome AAGCTGGGAAGGGAAGTGTCCCGTGTTTTGTTGTGCTCCTACCCCCTGGAATTCGCCATTGCCCTCTTGTACTCAATCTCTAGTTGTGCATATTTG tcccctaatggttcatgtttggttcacccttgtccttcccctgcctccagAAATTAGGCAGGGAAGTGTCACATGATTTGTTGTGCTCCCACCCTCTGGAGTCTGCCATGGCACTCTTATACACCATCTCCAGTTGTGCATATCTGgtacagtggggctgagtaattcaagggctgtgctcccttgatagacctgg Alignment from Spaln_nt2Genome AAGCTGGGAAGGGAAGTGTCCCGTGTTTTGTTGTGCTCCTACCCCCTGGAATTCGCCATTGCCCTCTTGTACTCAATCTCTAGTTGTGCATATTTG tcccctaatggttcatgtttggttcacccttgtccttcccctgcctccagAAATTAGGCAGGGAAGTGTCACATGATTTGTTGTGCTCCCACCCTCTGGAGTCTGCCATGGCACTCTTATACACCATCTCCAGTTGTGCATATCTGgtacagtggggctgagtaattcaagggctgtgctcccttgatagacctgg Alignment from Pairagon AAGCTGGGAAGGGAAGTGTCCCGTGTTTTGTTGTGCTCCTACCCCCTGGAATTCGCCATTGCCCTCTTGTACTCAATCTCTAGTTGTGCATATTTG tcccctaatggttcatgtttggttcacccttgtccttcccctgcctccagAAATTAGGCAGGGAAGTGTCACATGATTTGTTGTGCTCCCACCCTCTGGAGTCTGCCATGGCACTCTTATACACCATCTCCAGTTGTGCATATCTGgtacagtggggctgagtaattcaagggctgtgctcccttgatagacctgg Alignment from Exonerate_protein2genome AAGCTGGGAAGGGAAGTGTCCCGTGTTTTGTTGTGCTCCTACCCCCTGGAATTCGCCATTGCCCTCTTGTACTCAATCTCTAGTTGTGCATATTTG tcccctaatggttcatgtttggttcacccttgtccttcccctgcctccagAAATTAGGCAGGGAAGTGTCACATGATTTGTTGTGCTCCCACCCTCTGGAGTCTGCCATGGCACTCTTATACACCATCTCCAGTTGTGCATATCTGgtacagtggggctgagtaattcaagggctgtgctcccttgatagacctgg Alignment from Exonerate_coding2genome AAGCTGGGAAGGGAAGTGTCCCGTGTTTTGTTGTGCTCCTACCCCCTGGAATTCGCCATTGCCCTCTTGTACTCAATCTCTAGTTGTGCATATTTG tcccctaatggttcatgtttggttcacccttgtccttcccctgcctccagAAATTAGGCAGGGAAGTGTCACATGATTTGTTGTGCTCCCACCCTCTGGAGTCTGCCATGGCACTCTTATACACCATCTCCAGTTGTGCATATCTGgtacagtggggctgagtaattcaagggctgtgctcccttgatagacctgg Alignment from GeneWise AAGCTGGGAAGGGAAGTGTCCCGTGTTTTGTTGTGCTCCTACCCCCTGGAATTCGCCATTGCCCTCTTGTACTCAATCTCTAGTTGTGCATATTTG tcccctaatggttcatgtttggttcacccttgtccttcccctgcctccagAAATTAGGCAGGGAAGTGTCACATGATTTGTTGTGCTCCCACCCTCTGGAGTCTGCCATGGCACTCTTATACACCATCTCCAGTTGTGCATATCTGgtacagtggggctgagtaattcaagggctgtgctcccttgatagacctgg #### Ms4a15_ID3095_2 --> 1 - 0 Original Alignment cAACGCCAGCGGCCTCCGCCCACCTCCAGCCATTCTGCCCACCTCCATGTGC------CAGCCTCCAGGGATCATGCAGTTCGAAGAGTCACAGCTGGGGGCGCAGGCGCCCAGAGCTACTCAACCACCTGATCTTAGACCAATGGAGACGTTCTTGACCGGAGAACCCAAAGCTTTAGGG gttggctgaataagagtctttttatgtatgaagatatgttttcttaacagtAATGCCAGCAGCCTACATCCCCCTCCATCCATCCTGCCTACCTCCATGTGTGAGCCTGAACCTCCAGGGAGCATGCAGTTTGAAGAGTCACAGCTTGGGGCACAAGCACCCAGTGCAACCCAACCACCTGATTTTAGACCAATGGAGACATTTTTGACTGGAAAACCTAAAAGCTTGGGGgtatggggggattgttatgtgattgggcatatctgctggctatcaaaaat Alignment from CESAR cAACGCCAGCGGCCTCCGCCCACCTCCAGCCATTCTGCCCACCTCCATGTGCCAG------CCTCCAGGGATCATGCAGTTCGAAGAGTCACAGCTGGGGGCGCAGGCGCCCAGAGCTACTCAACCACCTGATCTTAGACCAATGGAGACGTTCTTGACCGGAGAACCCAAAGCTTTAGGG gttggctgaataagagtctttttatgtatgaagatatgttttcttaacagtAATGCCAGCAGCCTACATCCCCCTCCATCCATCCTGCCTACCTCCATGTGTGAGCCTGAACCTCCAGGGAGCATGCAGTTTGAAGAGTCACAGCTTGGGGCACAAGCACCCAGTGCAACCCAACCACCTGATTTTAGACCAATGGAGACATTTTTGACTGGAAAACCTAAAAGCTTGGGGgtatggggggattgttatgtgattgggcatatctgctggctatcaaaaat Alignment from Spaln_aa2Genome CAACGCCAGCGGCCTCCGCCCACCTCCAGCCATTCTGCCCACCTCCATGTGCCAG------CCTCCAGGGATCATGCAGTTCGAAGAGTCACAGCTGGGGGCGCAGGCGCCCAGAGCTACTCAACCACCTGATCTTAGACCAATGGAGACGTTCTTGACCGGAGAACCCAAAGCTTTAGGG gttggctgaataagagtctttttatgtatgaagatatgttttcttaacagTAATGCCAGCAGCCTACATCCCCCTCCATCCATCCTGCCTACCTCCATGTGTGAGCCTGAACCTCCAGGGAGCATGCAGTTTGAAGAGTCACAGCTTGGGGCACAAGCACCCAGTGCAACCCAACCACCTGATTTTAGACCAATGGAGACATTTTTGACTGGAAAACCTAAAAGCTTGGGGgtatggggggattgttatgtgattgggcatatctgctggctatcaaaaat Alignment from Spaln_nt2Genome CAACGCCAGCGGCCTCCGCCCACCTCCAGCCATTCTGCCCACCTCCATGTGCCAGCCT------CCAGGGATCATGCAGTTCGAAGAGTCACAGCTGGGGGCGCAGGCGCCCAGAGCTACTCAACCACCTGATCTTAGACCAATGGAGACGTTCTTGACCGGAGAACCCAAAGCTTTAGGG gttggctgaataagagtctttttatgtatgaagatatgttttcttaacagTAATGCCAGCAGCCTACATCCCCCTCCATCCATCCTGCCTACCTCCATGTGTGAGCCTGAACCTCCAGGGAGCATGCAGTTTGAAGAGTCACAGCTTGGGGCACAAGCACCCAGTGCAACCCAACCACCTGATTTTAGACCAATGGAGACATTTTTGACTGGAAAACCTAAAAGCTTGGGGgtatggggggattgttatgtgattgggcatatctgctggctatcaaaaat Alignment from Pairagon CAACGCCAGCGGCCTCCGCCCACCTCCAGCCATTCTGCCCACCTCCATGTGCCAG------CCTCCAGGGATCATGCAGTTCGAAGAGTCACAGCTGGGGGCGCAGGCGCCCAGAGCTACTCAACCACCTGATCTTAGACCAATGGAGACGTTCTTGACCGGAGAACCCAAAGCTTTAGGG gttggctgaataagagtctttttatgtatgaagatatgttttcttaacagTAATGCCAGCAGCCTACATCCCCCTCCATCCATCCTGCCTACCTCCATGTGTGAGCCTGAACCTCCAGGGAGCATGCAGTTTGAAGAGTCACAGCTTGGGGCACAAGCACCCAGTGCAACCCAACCACCTGATTTTAGACCAATGGAGACATTTTTGACTGGAAAACCTAAAAGCTTGGGGgtatggggggattgttatgtgattgggcatatctgctggctatcaaaaat Alignment from Exonerate_protein2genome CAACGCCAGCGGCCTCCGCCCACCTCCAGCCATTCTGCCCACCTCCATGTGC------CAGCCTCCAGGGATCATGCAGTTCGAAGAGTCACAGCTGGGGGCGCAGGCGCCCAGAGCTACTCAACCACCTGATCTTAGACCAATGGAGACGTTCTTGACCGGAGAACCCAAAGCTTTAGGG gttggctgaataagagtctttttatgtatgaagatatgttttcttaacagTAATGCCAGCAGCCTACATCCCCCTCCATCCATCCTGCCTACCTCCATGTGTGAGCCTGAACCTCCAGGGAGCATGCAGTTTGAAGAGTCACAGCTTGGGGCACAAGCACCCAGTGCAACCCAACCACCTGATTTTAGACCAATGGAGACATTTTTGACTGGAAAACCTAAAAGCTTGGGGgtatggggggattgttatgtgattgggcatatctgctggctatcaaaaat Alignment from Exonerate_coding2genome AGCCGCAACGCCAGCGGCCTCCGCCCACCTCCAGCCATTCTGCCCACCTCCATGTGC------CAGCCTCCAGGGATCATGCAGTTCGAAGAGTCACAGCTGGGGGCGCAGGCGCCCAGAGCTACTCAACCACCTGATCTTAGACCAATGGAGACGTTCTTGACCGGAGAACCCAAAGCTTTAGGG gttggctgaataagagtctttttatgtatgaagatatgttttcttAACAGTAATGCCAGCAGCCTACATCCCCCTCCATCCATCCTGCCTACCTCCATGTGTGAGCCTGAACCTCCAGGGAGCATGCAGTTTGAAGAGTCACAGCTTGGGGCACAAGCACCCAGTGCAACCCAACCACCTGATTTTAGACCAATGGAGACATTTTTGACTGGAAAACCTAAAAGCTTGGGGgtatggggggattgttatgtgattgggcatatctgctggctatcaaaaat Alignment from GeneWise CAACGCCAGCGGCCTCCGCCCACCTCCAGCCATTCTGCCCACCTCCATGTGCCAGCCT------CCAGGGATCATGCAGTTCGAAGAGTCACAGCTGGGGGCGCAGGCGCCCAGAGCTACTCAACCACCTGATCTTAGACCAATGGAGACGTTCTTGACCGGAGAACCCAAAGCTTTAGGG gttggctgaataagagtctttttatgtatgaagatatgttttcttaacagTAATGCCAGCAGCCTACATCCCCCTCCATCCATCCTGCCTACCTCCATGTGTGAGCCTGAACCTCCAGGGAGCATGCAGTTTGAAGAGTCACAGCTTGGGGCACAAGCACCCAGTGCAACCCAACCACCTGATTTTAGACCAATGGAGACATTTTTGACTGGAAAACCTAAAAGCTTGGGGgtatggggggattgttatgtgattgggcatatctgctggctatcaaaaat #### Ms4a18_ID3103_2 --> 0 - 0 Original Alignment GCCATCCAGATCCTCATTGGCCTATTTCATATCTTCTCTGCAGTCAACCCTCAACTCTACAACACTCAATTCTTCGTGGTTCCTTTGCTGGGGGTCTCAGGGTACCTGATCTGGGGAGGCCTGTCT tgaccctgaatggacctccttctagtttttccctcttcttctgcctccagGCCACCCAGATTCTTATTGGCCTATTTCAGATCTTTTCTGCAGTCAACCCTCAACTGTACAATACCCAATTCTTTGTCATTCCTTTGCTGGGGGTCTCTGGATATCTAATTTGGGGGGGCCTATCAgtaaatattaggctgagaggtccttactggggcgactcagagcagagggg Alignment from CESAR GCCATCCAGATCCTCATTGGCCTATTTCATATCTTCTCTGCAGTCAACCCTCAACTCTACAACACTCAATTCTTCGTGGTTCCTTTGCTGGGGGTCTCAGGGTACCTGATCTGGGGAGGCCTGTCT tgaccctgaatggacctccttctagtttttccctcttcttctgcctccagGCCACCCAGATTCTTATTGGCCTATTTCAGATCTTTTCTGCAGTCAACCCTCAACTGTACAATACCCAATTCTTTGTCATTCCTTTGCTGGGGGTCTCTGGATATCTAATTTGGGGGGGCCTATCAgtaaatattaggctgagaggtccttactggggcgactcagagcagagggg Alignment from Spaln_aa2Genome GCCATCCAGATCCTCATTGGCCTATTTCATATCTTCTCTGCAGTCAACCCTCAACTCTACAACACTCAATTCTTCGTGGTTCCTTTGCTGGGGGTCTCAGGGTACCTGATCTGGGGAGGCCTGTCT tgaccctgaatggacctccttctagtttttccctcttcttctgcctccagGCCACCCAGATTCTTATTGGCCTATTTCAGATCTTTTCTGCAGTCAACCCTCAACTGTACAATACCCAATTCTTTGTCATTCCTTTGCTGGGGGTCTCTGGATATCTAATTTGGGGGGGCCTATCAgtaaatattaggctgagaggtccttactggggcgactcagagcagagggg Alignment from Spaln_nt2Genome GCCATCCAGATCCTCATTGGCCTATTTCATATCTTCTCTGCAGTCAACCCTCAACTCTACAACACTCAATTCTTCGTGGTTCCTTTGCTGGGGGTCTCAGGGTACCTGATCTGGGGAGGCCTGTCT tgaccctgaatggacctccttctagtttttccctcttcttctgcctccagGCCACCCAGATTCTTATTGGCCTATTTCAGATCTTTTCTGCAGTCAACCCTCAACTGTACAATACCCAATTCTTTGTCATTCCTTTGCTGGGGGTCTCTGGATATCTAATTTGGGGGGGCCTATCAgtaaatattaggctgagaggtccttactggggcgactcagagcagagggg Alignment from Pairagon GCCATCCAGATCCTCATTGGCCTATTTCATATCTTCTCTGCAGTCAACCCTCAACTCTACAACACTCAATTCTTCGTGGTTCCTTTGCTGGGGGTCTCAGGGTACCTGATCTGGGGAGGCCTGTCT tgaccctgaatggacctccttctagtttttccctcttcttctgcctccagGCCACCCAGATTCTTATTGGCCTATTTCAGATCTTTTCTGCAGTCAACCCTCAACTGTACAATACCCAATTCTTTGTCATTCCTTTGCTGGGGGTCTCTGGATATCTAATTTGGGGGGGCCTATCAgtaaatattaggctgagaggtccttactggggcgactcagagcagagggg Alignment from Exonerate_protein2genome GCCATCCAGATCCTCATTGGCCTATTTCATATCTTCTCTGCAGTCAACCCTCAACTCTACAACACTCAATTCTTCGTGGTTCCTTTGCTGGGGGTCTCAGGGTACCTGATCTGGGGAGGCCTGTCT tgaccctgaatggacctccttctagtttttccctcttcttctgcctccagGCCACCCAGATTCTTATTGGCCTATTTCAGATCTTTTCTGCAGTCAACCCTCAACTGTACAATACCCAATTCTTTGTCATTCCTTTGCTGGGGGTCTCTGGATATCTAATTTGGGGGGGCCTATCAgtaaatattaggctgagaggtccttactggggcgactcagagcagagggg Alignment from Exonerate_coding2genome GCCATCCAGATCCTCATTGGCCTATTTCATATCTTCTCTGCAGTCAACCCTCAACTCTACAACACTCAATTCTTCGTGGTTCCTTTGCTGGGGGTCTCAGGGTACCTGATCTGGGGAGGCCTGTCT tgaccctgaatggacctccttctagtttttccctcttcttctgcctccagGCCACCCAGATTCTTATTGGCCTATTTCAGATCTTTTCTGCAGTCAACCCTCAACTGTACAATACCCAATTCTTTGTCATTCCTTTGCTGGGGGTCTCTGGATATCTAATTTGGGGGGGCCTATCAgtaaatattaggctgagaggtccttactggggcgactcagagcagagggg Alignment from GeneWise GCCATCCAGATCCTCATTGGCCTATTTCATATCTTCTCTGCAGTCAACCCTCAACTCTACAACACTCAATTCTTCGTGGTTCCTTTGCTGGGGGTCTCAGGGTACCTGATCTGGGGAGGCCTGTCT tgaccctgaatggacctccttctagtttttccctcttcttctgcctccagGCCACCCAGATTCTTATTGGCCTATTTCAGATCTTTTCTGCAGTCAACCCTCAACTGTACAATACCCAATTCTTTGTCATTCCTTTGCTGGGGGTCTCTGGATATCTAATTTGGGGGGGCCTATCAgtaaatattaggctgagaggtccttactggggcgactcagagcagagggg #### Ms4a2_ID3239_6 --> 0 - 0 Original Alignment GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGA---CAAGAGTTAGAAAGTAAAAAG agtaggcatagaccatgacattcacattctcactgtcctttcatgtctagGAACTGGTC---ATGATGCTGTTTTTTACTATACTAGCATTTTGCAGTGCTGTACTGTTCACTATCTATCGGATTGGACAGGAGGAGTTGGAAAGTAAGAAGgtaagggtaataggggttattgtataagagaatttgcattttgctactcc Alignment from CESAR GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAG---TTAGAAAGTAAAAAG agtaggcatagaccatgacattcacattctcactgtcctttcatgtctagGAACTGGTC---ATGATGCTGTTTTTTACTATACTAGCATTTTGCAGTGCTGTACTGTTCACTATCTATCGGATTGGACAGGAGGAGTTGGAAAGTAAGAAGgtaagggtaataggggttattgtataagagaatttgcattttgctactcc Alignment from Spaln_aa2Genome GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAA---GAGTTAGAAAGTAAAAAG agtaggcatagaccatgacattcacattctcactgtcctttcatgtctagGAACTGGTC---ATGATGCTGTTTTTTACTATACTAGCATTTTGCAGTGCTGTACTGTTCACTATCTATCGGATTGGACAGGAGGAGTTGGAAAGTAAGAAGgtaagggtaataggggttattgtataagagaatttgcattttgctactcc Alignment from Spaln_nt2Genome GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAG---TTAGAAAGTAAAAAG agtaggcatagaccatgacattcacattctcactgtcctttcatgtctagGAACTGG---TCATGATGCTGTTTTTTACTATACTAGCATTTTGCAGTGCTGTACTGTTCACTATCTATCGGATTGGACAGGAGGAGTTGGAAAGTAAGAAGgtaagggtaataggggttattgtataagagaatttgcattttgctactcc Alignment from Pairagon GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGAC---AAGAGTTAGAAAGTAAAAAG agtaggcatagaccatgacattcacattctcactgtcctttcatgtctagGAACTGG---TCATGATGCTGTTTTTTACTATACTAGCATTTTGCAGTGCTGTACTGTTCACTATCTATCGGATTGGACAGGAGGAGTTGGAAAGTAAGAAGgtaagggtaataggggttattgtataagagaatttgcattttgctactcc Alignment from Exonerate_protein2genome GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAA---GAGTTAGAAAGTAAAAAG agtaggcatagaccatgacattcacattctcactgtcctttcatgtctagGAACTGGTC---ATGATGCTGTTTTTTACTATACTAGCATTTTGCAGTGCTGTACTGTTCACTATCTATCGGATTGGACAGGAGGAGTTGGAAAGTAAGAAGgtaagggtaataggggttattgtataagagaatttgcattttgctactcc Alignment from Exonerate_coding2genome GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAA---GAGTTAGAAAGTAAAAAG agtaggcatagaccatgacattcacattctcactgtcctttcatgtctagGAACTGGTC---ATGATGCTGTTTTTTACTATACTAGCATTTTGCAGTGCTGTACTGTTCACTATCTATCGGATTGGACAGGAGGAGTTGGAAAGTAAGAAGgtaagggtaataggggttattgtataagagaatttgcattttgctactcc Alignment from GeneWise GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAG---TTAGAAAGTAAAAAG agtaggcatagaccatgacattcacattctcactgtcctttcatgtctagGAACTGGTC---ATGATGCTGTTTTTTACTATACTAGCATTTTGCAGTGCTGTACTGTTCACTATCTATCGGATTGGACAGGAGGAGTTGGAAAGTAAGAAGgtaagggtaataggggttattgtataagagaatttgcattttgctactcc #### Ms4a2_ID3242_3 --> 0 - 0 Original Alignment GCAACACAAATTCTGGTTGGTTTGATATGCCTTTGTTTTGGAACAATTGTCTGCTCCGTACTCTATGTTTCAGACTTTGATGAAGAAGTGCTTTTACTTTATAAACTAGGCTATCCATTCTGGGGTGCAGTGCTG tttttcatatattcatgaattggcgacatctaagtgtctttgtgtttcagGCAACACAGATTTTGGTTGGTCTGATT------TGTTTTGGAACAATTGTCTGCTCTGTAATTTATGTTTCAGACTTTGATGAAGAGGTTCTTTCACTCTACAAGCTTGTATATCCCTTCTGGGGCGCAGTCCTGgtaaggacacacttctgattaactgtttctgaatgataactgtcttatta Alignment from CESAR GCAACACAAATTCTGGTTGGTTTGATATGCCTTTGTTTTGGAACAATTGTCTGCTCCGTACTCTATGTTTCAGACTTTGATGAAGAAGTGCTTTTACTTTATAAACTAGGCTATCCATTCTGGGGTGCAGTGCTG tttttcatatattcatgaattggcgacatctaagtgtctttgtgtttcagGCAACACAGATTTTGGTTGGTCTGATT------TGTTTTGGAACAATTGTCTGCTCTGTAATTTATGTTTCAGACTTTGATGAAGAGGTTCTTTCACTCTACAAGCTTGTATATCCCTTCTGGGGCGCAGTCCTGgtaaggacacacttctgattaactgtttctgaatgataactgtcttatta Alignment from Spaln_aa2Genome GCAACACAAATTCTGGTTGGTTTGATATGCCTTTGTTTTGGAACAATTGTCTGCTCCGTACTCTATGTTTCAGACTTTGATGAAGAAGTGCTTTTACTTTATAAACTAGGCTATCCATTCTGGGGTGCAGTGCTG tttttcatatattcatgaattggcgacatctaagtgtctttgtgtttcagGCAACACAGATTTTGGTTGGTCTGATT------TGTTTTGGAACAATTGTCTGCTCTGTAATTTATGTTTCAGACTTTGATGAAGAGGTTCTTTCACTCTACAAGCTTGTATATCCCTTCTGGGGCGCAGTCCTGgtaaggacacacttctgattaactgtttctgaatgataactgtcttatta Alignment from Spaln_nt2Genome GCAACACAAATTCTGGTTGGTTTGATATGCCTTTGTTTTGGAACAATTGTCTGCTCCGTACTCTATGTTTCAGACTTTGATGAAGAAGTGCTTTTACTTTATAAACTAGGCTATCCATTCTGGGGTGCAGTGCTG tttttcatatattcatgaattggcgacatctaagtgtctttgtgtttcagGCAACACAGATTTTGGTTGGTCTGA------TTTGTTTTGGAACAATTGTCTGCTCTGTAATTTATGTTTCAGACTTTGATGAAGAGGTTCTTTCACTCTACAAGCTTGTATATCCCTTCTGGGGCGCAGTCCTGgtaaggacacacttctgattaactgtttctgaatgataactgtcttatta Alignment from Pairagon GCAACACAAATTCTGGTTGGTTTGATATGCCTTTGTTTTGGAACAATTGTCTGCTCCGTACTCTATGTTTCAGACTTTGATGAAGAAGTGCTTTTACTTTATAAACTAGGCTATCCATTCTGGGGTGCAGTGCTG tttttcatatattcatgaattggcgacatctaagtgtctttgtgtttcagGCAACACAGATTTTGGTTGGTCTGA------TTTGTTTTGGAACAATTGTCTGCTCTGTAATTTATGTTTCAGACTTTGATGAAGAGGTTCTTTCACTCTACAAGCTTGTATATCCCTTCTGGGGCGCAGTCCTGgtaaggacacacttctgattaactgtttctgaatgataactgtcttatta Alignment from Exonerate_protein2genome GCAACACAAATTCTGGTTGGTTTGATATGCCTTTGTTTTGGAACAATTGTCTGCTCCGTACTCTATGTTTCAGACTTTGATGAAGAAGTGCTTTTACTTTATAAACTAGGCTATCCATTCTGGGGTGCAGTGCTG tttttcatatattcatgaattggcgacatctaagtgtctttgtgtttcagGCAACACAGATTTTGGTTGGTCTGATT------TGTTTTGGAACAATTGTCTGCTCTGTAATTTATGTTTCAGACTTTGATGAAGAGGTTCTTTCACTCTACAAGCTTGTATATCCCTTCTGGGGCGCAGTCCTGgtaaggacacacttctgattaactgtttctgaatgataactgtcttatta Alignment from Exonerate_coding2genome GCAACACAAATTCTGGTTGGTTTGATATGCCTTTGTTTTGGAACAATTGTCTGCTCCGTACTCTATGTTTCAGACTTTGATGAAGAAGTGCTTTTACTTTATAAACTAGGCTATCCATTCTGGGGTGCAGTGCTG tttttcatatattcatgaattggcgacatctaagtgtctttgtgtttcagGCAACACAGATTTTGGTTGGTCTGATT------TGTTTTGGAACAATTGTCTGCTCTGTAATTTATGTTTCAGACTTTGATGAAGAGGTTCTTTCACTCTACAAGCTTGTATATCCCTTCTGGGGCGCAGTCCTGgtaaggacacacttctgattaactgtttctgaatgataactgtcttatta Alignment from GeneWise GCAACACAAATTCTGGTTGGTTTGATATGCCTTTGTTTTGGAACAATTGTCTGCTCCGTACTCTATGTTTCAGACTTTGATGAAGAAGTGCTTTTACTTTATAAACTAGGCTATCCATTCTGGGGTGCAGTGCTG tttttcatatattcatgaattggcgacatctaagtgtctttgtgtttcagGCAACACAGATTTTGGTTGGTCTGATTTGT------TTTGGAACAATTGTCTGCTCTGTAATTTATGTTTCAGACTTTGATGAAGAGGTTCTTTCACTCTACAAGCTTGTATATCCCTTCTGGGGCGCAGTCCTGgtaaggacacacttctgattaactgtttctgaatgataactgtcttatta #### Ms4a4c_ID3180_3 --> 0 - 0 Original Alignment TTCATTGTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAAGCCTG aactgactgcttgagaattgtgaacacattctttcgtgtattttatgcagTTCATTGTTGCAGGGTCCCTTTCAATTGCAGCAGGAGTGAAGCCTACGAAAAGCCTAgtgaggtggcaatcctatcaggttggcaccctattactacatgaatgaga Alignment from CESAR TTCATTGTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAAGCCTG aactgactgcttgagaattgtgaacacattctttcgtgtattttatgcagTTCATTGTTGCAGGGTCCCTTTCAATTGCAGCAGGAGTGAAGCCTACGAAAAGCCTAgtgaggtggcaatcctatcaggttggcaccctattactacatgaatgaga Alignment from Spaln_aa2Genome TTCATTGTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAAGCCTG aactgactgcttgagaattgtgaacacattctttcgtgtattttatgcagTTCATTGTTGCAGGGTCCCTTTCAATTGCAGCAGGAGTGAAGCCTACGAAAAGCCTAgtgaggtggcaatcctatcaggttggcaccctattactacatgaatgaga Alignment from Spaln_nt2Genome TTCATTGTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAAGCCTG aactgactgcttgagaattgtgaacacattctttcgtgtattttatgcagTTCATTGTTGCAGGGTCCCTTTCAATTGCAGCAGGAGTGAAGCCTACGAAAAGCCTAgtgaggtggcaatcctatcaggttggcaccctattactacatgaatgaga Alignment from Pairagon TTCATTGTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAAGCCTG aactgactgcttgagaattgtgaacacattctttcgtgtattttatgcagTTCATTGTTGCAGGGTCCCTTTCAATTGCAGCAGGAGTGAAGCCTACGAAAAGCCTAgtgaggtggcaatcctatcaggttggcaccctattactacatgaatgaga Alignment from Exonerate_protein2genome TTCATTGTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAAGCCTG aactgactgcttgagaattgtgaacacattctttcgtgtattttatgcagTTCATTGTTGCAGGGTCCCTTTCAATTGCAGCAGGAGTGAAGCCTACGAAAAGCCTAgtgaggtggcaatcctatcaggttggcaccctattactacatgaatgaga Alignment from Exonerate_coding2genome TTCATTGTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAAGCCTG aactgactgcttgagaattgtgaacacattctttcgtgtattttatgcagTTCATTGTTGCAGGGTCCCTTTCAATTGCAGCAGGAGTGAAGCCTACGAAAAGCCTAgtgaggtggcaatcctatcaggttggcaccctattactacatgaatgaga Alignment from GeneWise TTCATTGTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAAGCCTG aactgactgcttgagaattgtgaacacattctttcgtgtattttatgcagTTCATTGTTGCAGGGTCCCTTTCAATTGCAGCAGGAGTGAAGCCTACGAAAAGCCTAgtgaggtggcaatcctatcaggttggcaccctattactacatgaatgaga #### Ms4a5_ID3161_4 --> 0 - 0 Original Alignment ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataagaaagcaggcaacctccccgttcttcttcaccccaagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGTTTCCTTCTAGACGGGGAGTTCATCTGTGGCTATTCCCCTGCTGGTATGCAGTGTGGTGTGATTACCATCCTATTCATTgtaagtaacatattctgctgattaggactaaacaaaggtgagaaaggggc Alignment from CESAR ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataagaaagcaggcaacctccccgttcttcttcaccccaagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGTTTCCTTCTAGACGGGGAGTTCATCTGTGGCTATTCCCCTGCTGGTATGCAGTGTGGTGTGATTACCATCCTATTCATTgtaagtaacatattctgctgattaggactaaacaaaggtgagaaaggggc Alignment from Spaln_aa2Genome ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataagaaagcaggcaacctccccgttcttcttcaccccaagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGTTTCCTTCTAGACGGGGAGTTCATCTGTGGCTATTCCCCTGCTGGTATGCAGTGTGGTGTGATTACCATCCTATTCATTgtaagtaacatattctgctgattaggactaaacaaaggtgagaaaggggc Alignment from Spaln_nt2Genome ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataagaaagcaggcaacctccccgttcttcttcaccccaagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGTTTCCTTCTAGACGGGGAGTTCATCTGTGGCTATTCCCCTGCTGGTATGCAGTGTGGTGTGATTACCATCCTATTCATTgtaagtaacatattctgctgattaggactaaacaaaggtgagaaaggggc Alignment from Pairagon ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataagaaagcaggcaacctccccgttcttcttcaccccaagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGTTTCCTTCTAGACGGGGAGTTCATCTGTGGCTATTCCCCTGCTGGTATGCAGTGTGGTGTGATTACCATCCTATTCATTgtaagtaacatattctgctgattaggactaaacaaaggtgagaaaggggc Alignment from Exonerate_protein2genome ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataagaaagcaggcaacctccccgttcttcttcaccccaagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGTTTCCTTCTAGACGGGGAGTTCATCTGTGGCTATTCCCCTGCTGGTATGCAGTGTGGTGTGATTACCATCCTATTCATTgtaagtaacatattctgctgattaggactaaacaaaggtgagaaaggggc Alignment from Exonerate_coding2genome ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataagaaagcaggcaacctccccgttcttcttcaccccaagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGTTTCCTTCTAGACGGGGAGTTCATCTGTGGCTATTCCCCTGCTGGTATGCAGTGTGGTGTGATTACCATCCTATTCATTgtaagtaacatattctgctgattaggactaaacaaaggtgagaaaggggc Alignment from GeneWise ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataagaaagcaggcaacctccccgttcttcttcaccccaagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGTTTCCTTCTAGACGGGGAGTTCATCTGTGGCTATTCCCCTGCTGGTATGCAGTGTGGTGTGATTACCATCCTATTCATTgtaagtaacatattctgctgattaggactaaacaaaggtgagaaaggggc #### Ms4a6c_ID3199_4 --> 0 - 0 Original Alignment GTAGATGCCAGCCTAACTCTGAATATCCTGAGTGTTTCATTTGCTTTCGTGGGCATCATTATCATCTCTGTCAGCCTGGCTGGTTTGCATCCTGCCTCAGAGCAATGCAAGCAGAGCAAGGAGCTTAGTCTAATTGAACATGACTACTACCAACCTTTCTACAACTCAGACAGGAGTGAATGTGCCGTCACCAAGTCTATTCTGACT atatagagaagccctttgagtaaagctatagacacatgcttttcttttagGTAGATGTGAGTCTCACTTTGAATATTTTAAGTGTCTCATTTTCCTTTGTGGGC---ATCATTGTCCCTGTCAGCCTTGCTGGTCTGCATCCTACATCGGAGCAGTGCAAACAGAGCAAGGAACTCAGCCTAATAGAGCATGACTATCACCAGCCATTCTATAACTCAGACAGGAGTGAGTGTGCTGTCACCAAGTCAATTCTGACTgtgagtgtatcgcggccctcctctacatttctggaaccactatcattctg Alignment from CESAR GTAGATGCCAGCCTAACTCTGAATATCCTGAGTGTTTCATTTGCTTTCGTGGGCATCATTATCATCTCTGTCAGCCTGGCTGGTTTGCATCCTGCCTCAGAGCAATGCAAGCAGAGCAAGGAGCTTAGTCTAATTGAACATGACTACTACCAACCTTTCTACAACTCAGACAGGAGTGAATGTGCCGTCACCAAGTCTATTCTGACT atatagagaagccctttgagtaaagctatagacacatgcttttcttttagGTAGATGTGAGTCTCACTTTGAATATTTTAAGTGTCTCATTTTCCTTTGTGGGCATCATT---GTCCCTGTCAGCCTTGCTGGTCTGCATCCTACATCGGAGCAGTGCAAACAGAGCAAGGAACTCAGCCTAATAGAGCATGACTATCACCAGCCATTCTATAACTCAGACAGGAGTGAGTGTGCTGTCACCAAGTCAATTCTGACTgtgagtgtatcgcggccctcctctacatttctggaaccactatcattctg Alignment from Spaln_aa2Genome GTAGATGCCAGCCTAACTCTGAATATCCTGAGTGTTTCATTTGCTTTCGTGGGCATCATTATCATCTCTGTCAGCCTGGCTGGTTTGCATCCTGCCTCAGAGCAATGCAAGCAGAGCAAGGAGCTTAGTCTAATTGAACATGACTACTACCAACCTTTCTACAACTCAGACAGGAGTGAATGTGCCGTCACCAAGTCTATTCTGACT atatagagaagccctttgagtaaagctatagacacatgcttttcttttagGTAGATGTGAGTCTCACTTTGAATATTTTAAGTGTCTCATTTTCCTTTGTGGGC---ATCATTGTCCCTGTCAGCCTTGCTGGTCTGCATCCTACATCGGAGCAGTGCAAACAGAGCAAGGAACTCAGCCTAATAGAGCATGACTATCACCAGCCATTCTATAACTCAGACAGGAGTGAGTGTGCTGTCACCAAGTCAATTCTGACTgtgagtgtatcgcggccctcctctacatttctggaaccactatcattctg Alignment from Spaln_nt2Genome GTAGATGCCAGCCTAACTCTGAATATCCTGAGTGTTTCATTTGCTTTCGTGGGCATCATTATCATCTCTGTCAGCCTGGCTGGTTTGCATCCTGCCTCAGAGCAATGCAAGCAGAGCAAGGAGCTTAGTCTAATTGAACATGACTACTACCAACCTTTCTACAACTCAGACAGGAGTGAATGTGCCGTCACCAAGTCTATTCTGACT atatagagaagccctttgagtaaagctatagacacatgcttttcttttagGTAGATGTGAGTCTCACTTTGAATATTTTAAGTGTCTCATTTTCCTTTGTGGGCATCATT---GTCCCTGTCAGCCTTGCTGGTCTGCATCCTACATCGGAGCAGTGCAAACAGAGCAAGGAACTCAGCCTAATAGAGCATGACTATCACCAGCCATTCTATAACTCAGACAGGAGTGAGTGTGCTGTCACCAAGTCAATTCTGACTgtgagtgtatcgcggccctcctctacatttctggaaccactatcattctg Alignment from Pairagon GTAGATGCCAGCCTAACTCTGAATATCCTGAGTGTTTCATTTGCTTTCGTGGGCATCATTATCATCTCTGTCAGCCTGGCTGGTTTGCATCCTGCCTCAGAGCAATGCAAGCAGAGCAAGGAGCTTAGTCTAATTGAACATGACTACTACCAACCTTTCTACAACTCAGACAGGAGTGAATGTGCCGTCACCAAGTCTATTCTGACT atatagagaagccctttgagtaaagctatagacacatgcttttcttttagGTAGATGTGAGTCTCACTTTGAATATTTTAAGTGTCTCATTTTCCTTTGTGGGCATCATT---GTCCCTGTCAGCCTTGCTGGTCTGCATCCTACATCGGAGCAGTGCAAACAGAGCAAGGAACTCAGCCTAATAGAGCATGACTATCACCAGCCATTCTATAACTCAGACAGGAGTGAGTGTGCTGTCACCAAGTCAATTCTGACTgtgagtgtatcgcggccctcctctacatttctggaaccactatcattctg Alignment from Exonerate_protein2genome GTAGATGCCAGCCTAACTCTGAATATCCTGAGTGTTTCATTTGCTTTCGTGGGCATCATTATCATCTCTGTCAGCCTGGCTGGTTTGCATCCTGCCTCAGAGCAATGCAAGCAGAGCAAGGAGCTTAGTCTAATTGAACATGACTACTACCAACCTTTCTACAACTCAGACAGGAGTGAATGTGCCGTCACCAAGTCTATTCTGACT atatagagaagccctttgagtaaagctatagacacatgcttttcttttagGTAGATGTGAGTCTCACTTTGAATATTTTAAGTGTCTCATTTTCCTTTGTGGGC---ATCATTGTCCCTGTCAGCCTTGCTGGTCTGCATCCTACATCGGAGCAGTGCAAACAGAGCAAGGAACTCAGCCTAATAGAGCATGACTATCACCAGCCATTCTATAACTCAGACAGGAGTGAGTGTGCTGTCACCAAGTCAATTCTGACTgtgagtgtatcgcggccctcctctacatttctggaaccactatcattctg Alignment from Exonerate_coding2genome GTAGATGCCAGCCTAACTCTGAATATCCTGAGTGTTTCATTTGCTTTCGTGGGCATCATTATCATCTCTGTCAGCCTGGCTGGTTTGCATCCTGCCTCAGAGCAATGCAAGCAGAGCAAGGAGCTTAGTCTAATTGAACATGACTACTACCAACCTTTCTACAACTCAGACAGGAGTGAATGTGCCGTCACCAAGTCTATTCTGACT atatagagaagccctttgagtaaagctatagacacatgcttttcttttagGTAGATGTGAGTCTCACTTTGAATATTTTAAGTGTCTCATTTTCCTTTGTGGGC---ATCATTGTCCCTGTCAGCCTTGCTGGTCTGCATCCTACATCGGAGCAGTGCAAACAGAGCAAGGAACTCAGCCTAATAGAGCATGACTATCACCAGCCATTCTATAACTCAGACAGGAGTGAGTGTGCTGTCACCAAGTCAATTCTGACTgtgagtgtatcgcggccctcctctacatttctggaaccactatcattctg Alignment from GeneWise GTAGATGCCAGCCTAACTCTGAATATCCTGAGTGTTTCATTTGCTTTCGTGGGCATCATTATCATCTCTGTCAGCCTGGCTGGTTTGCATCCTGCCTCAGAGCAATGCAAGCAGAGCAAGGAGCTTAGTCTAATTGAACATGACTACTACCAACCTTTCTACAACTCAGACAGGAGTGAATGTGCCGTCACCAAGTCTATTCTGACT atatagagaagccctttgagtaaagctatagacacatgcttttcttttagGTAGATGTGAGTCTCACTTTGAATATTTTAAGTGTCTCATTTTCCTTTGTGGGCATCATTGTC---CCTGTCAGCCTTGCTGGTCTGCATCCTACATCGGAGCAGTGCAAACAGAGCAAGGAACTCAGCCTAATAGAGCATGACTATCACCAGCCATTCTATAACTCAGACAGGAGTGAGTGTGCTGTCACCAAGTCAATTCTGACTgtgagtgtatcgcggccctcctctacatttctggaaccactatcattctg #### Ms4a6c_ID3200_5 --> 0 - 2 Original Alignment GGAGCCCTTTCAGTGATGCTGATCATCAGTGTGTTGGAGCTTGGTCTGGCTTTGCTCTCTGCCATGCTGTGGTTGAGAGAGGGTGTTCTGACTTCCCTTag gtggcatgtggccagcatgctcttgctgtccatttctcctaaatttccagGGAGCCCTCTCTGTTATGCTCATCATCAGTGTCTTGGCACTTGGCCTTGCTTTGATCTCTGCAATGTTGAGGTTGAGAGAGGGTGTGCTAACCTCCCTTcggtgagttcaccatttcctgggaacccaccttactatctcctgacctttat Alignment from CESAR GGAGCCCTTTCAGTGATGCTGATCATCAGTGTGTTGGAGCTTGGTCTGGCTTTGCTCTCTGCCATGCTGTGGTTGAGAGAGGGTGTTCTGACTTCCCTTag gtggcatgtggccagcatgctcttgctgtccatttctcctaaatttccagGGAGCCCTCTCTGTTATGCTCATCATCAGTGTCTTGGCACTTGGCCTTGCTTTGATCTCTGCAATGTTGAGGTTGAGAGAGGGTGTGCTAACCTCCCTTcggtgagttcaccatttcctgggaacccaccttactatctcctgacctttat Alignment from Spaln_aa2Genome GGAGCCCTTTCAGTGATGCTGATCATCAGTGTGTTGGAGCTTGGTCTGGCTTTGCTCTCTGCCATGCTGTGGTTGAGAGAGGGTGTTCTGACTTCCCTTAGAATG gtggcatgtggccagcatgctcttgctgtccatttctcctaaatttccagGGAGCCCTCTCTGTTATGCTCATCATCAGTGTCTTGGCACTTGGCCTTGCTTTGATCTCTGCAATGTTGAGGTTGAGAGAGGGTGTGCTAACCTCCCTTCGG---tgagttcaccatttcctgggaacccaccttactatctcctgacctt Alignment from Spaln_nt2Genome GGAGCCCTTTCAGTGATGCTGATCATCAGTGTGTTGGAGCTTGGTCTGGCTTTGCTCTCTGCCATGCTGTGGTTGAGAGAGGGTGTTCTGACTTCCCTTAG gtggcatgtggccagcatgctcttgctgtccatttctcctaaatttccagGGAGCCCTCTCTGTTATGCTCATCATCAGTGTCTTGGCACTTGGCCTTGCTTTGATCTCTGCAATGTTGAGGTTGAGAGAGGGTGTGCTAACCTCCCTTCGgtgagttcaccatttcctgggaacccaccttactatctcctgacctttat Alignment from Pairagon GGAGCCCTTTCAGTGATGCTGATCATCAGTGTGTTGGAGCTTGGTCTGGCTTTGCTCTCTGCCATGCTGTGGTTGAGAGAGGGTGTTCTGACTTCCCTTAG gtggcatgtggccagcatgctcttgctgtccatttctcctaaatttccagGGAGCCCTCTCTGTTATGCTCATCATCAGTGTCTTGGCACTTGGCCTTGCTTTGATCTCTGCAATGTTGAGGTTGAGAGAGGGTGTGCTAACCTCCCTTCGgtgagttcaccatttcctgggaacccaccttactatctcctgacctttat Alignment from Exonerate_protein2genome GGAGCCCTTTCAGTGATGCTGATCATCAGTGTGTTGGAGCTTGGTCTGGCTTTGCTCTCTGCCATGCTGTGGTTGAGAGAGGGTGTTCTGACTTCCCTTAGA gtggcatgtggccagcatgctcttgctgtccatttctcctaaatttccagGGAGCCCTCTCTGTTATGCTCATCATCAGTGTCTTGGCACTTGGCCTTGCTTTGATCTCTGCAATGTTGAGGTTGAGAGAGGGTGTGCTAACCTCCCTTCGGtgagttcaccatttcctgggaacccaccttactatctcctgacctttat Alignment from Exonerate_coding2genome GGAGCCCTTTCAGTGATGCTGATCATCAGTGTGTTGGAGCTTGGTCTGGCTTTGCTCTCTGCCATGCTGTGGTTGAGAGAGGGTGTTCTGACTTCCCTTAGA gtggcatgtggccagcatgctcttgctgtccatttctcctaaatttccagGGAGCCCTCTCTGTTATGCTCATCATCAGTGTCTTGGCACTTGGCCTTGCTTTGATCTCTGCAATGTTGAGGTTGAGAGAGGGTGTGCTAACCTCCCTTCGGtgagttcaccatttcctgggaacccaccttactatctcctgacctttat Alignment from GeneWise GGAGCCCTTTCAGTGATGCTGATCATCAGTGTGTTGGAGCTTGGTCTGGCTTTGCTCTCTGCCATGCTGTGGTTGAGAGAGGGTGTTCTGACTTCCCTTAGAATG gtggcatgtggccagcatgctcttgctgtccatttctcctaaatttccagGGAGCCCTCTCTGTTATGCTCATCATCAGTGTCTTGGCACTTGGCCTTGCTTTGATCTCTGCAATGTTGAGGTTGAGAGAGGGTGTGCTAACCTCCCTTCGG---tgagttcaccatttcctgggaacccaccttactatctcctgacctt #### Ms4a8a_ID3115_5 --> 0 - 0 Original Alignment CTGAATGGCAGTGTGGGCTTGAACATCTTCAGCGCCATCTGTTCTGCGGTGGGCATCATGCTCTTCATCACAGACATCAGTATCTCATCAGGATACATCTACCCTAGCTACTACCCTTACCAGGAGAACTTGGGTGTG ggctttggccatgccacatctgtactccgttgttgtgttttaatctatagCTGAACAGCAGTATAGACTTGAATATCTTCATTGCTATTTGT------GTGGATATAATGCTCTTCATCTTTGACATTGGTATCTCATCAGGATTCATTTACCCTAGTTATTACCGTCACCTGGGCAACTTGGGTGTGgtgggtgtggtaaccaaaggccttgtccctcatatctgtaaaaccatacc Alignment from CESAR CTGAATGGCAGTGTGGGCTTGAACATCTTCAGCGCCATCTGTTCTGCGGTGGGCATCATGCTCTTCATCACAGACATCAGTATCTCATCAGGATACATCTACCCTAGCTACTACCCTTACCAGGAGAACTTGGGTGTG ggctttggccatgccacatctgtactccgttgttgtgttttaatctatagCTGAACAGCAGTATAGACTTGAATATCTTCATTGCTATTTGT------GTGGATATAATGCTCTTCATCTTTGACATTGGTATCTCATCAGGATTCATTTACCCTAGTTATTACCGTCACCTGGGCAACTTGGGTGTGgtgggtgtggtaaccaaaggccttgtccctcatatctgtaaaaccatacc Alignment from Spaln_aa2Genome CTGAATGGCAGTGTGGGCTTGAACATCTTCAGCGCCATCTGTTCTGCGGTGGGCATCATGCTCTTCATCACAGACATCAGTATCTCATCAGGATACATCTACCCTAGCTACTACCCTTACCAGGAGAACTTGGGTGTG ggctttggccatgccacatctgtactccgttgttgtgttttaatctatagCTGAACAGCAGTATAGACTTGAATATCTTCATTGCTATTTGT------GTGGATATAATGCTCTTCATCTTTGACATTGGTATCTCATCAGGATTCATTTACCCTAGTTATTACCGTCACCTGGGCAACTTGGGTGTGgtgggtgtggtaaccaaaggccttgtccctcatatctgtaaaaccatacc Alignment from Spaln_nt2Genome CTGAATGGCAGTGTGGGCTTGAACATCTTCAGCGCCATCTGTTCTGCGGTGGGCATCATGCTCTTCATCACAGACATCAGTATCTCATCAGGATACATCTACCCTAGCTACTACCCTTACCAGGAGAACTTGGGTGTG ggctttggccatgccacatctgtactccgttgttgtgttttaatctatagCTGAACAGCAGTATAGACTTGAATATCTTCATTGCTATTTGT------GTGGATATAATGCTCTTCATCTTTGACATTGGTATCTCATCAGGATTCATTTACCCTAGTTATTACCGTCACCTGGGCAACTTGGGTGTGgtgggtgtggtaaccaaaggccttgtccctcatatctgtaaaaccatacc Alignment from Pairagon CTGAATGGCAGTGTGGGCTTGAACATCTTCAGCGCCATCTGTTCTGCGGTGGGCATCATGCTCTTCATCACAGACATCAGTATCTCATCAGGATACATCTACCCTAGCTACTACCCTTACCAGGAGAACTTGGGTGTG ggctttggccatgccacatctgtactccgttgttgtgttttaatctatagCTGAACAGCAGTATAGACTTGAATATCTTCATTGCTATTTGT------GTGGATATAATGCTCTTCATCTTTGACATTGGTATCTCATCAGGATTCATTTACCCTAGTTATTACCGTCACCTGGGCAACTTGGGTGTGgtgggtgtggtaaccaaaggccttgtccctcatatctgtaaaaccatacc Alignment from Exonerate_protein2genome CTGAATGGCAGTGTGGGCTTGAACATCTTCAGCGCCATCTGTTCTGCGGTGGGCATCATGCTCTTCATCACAGACATCAGTATCTCATCAGGATACATCTACCCTAGCTACTACCCTTACCAGGAGAACTTGGGTGTG ggctttggccatgccacatctgtactccgttgttgtgttttaatctatagCTGAACAGCAGTATAGACTTGAATATCTTCATTGCTATTTGT------GTGGATATAATGCTCTTCATCTTTGACATTGGTATCTCATCAGGATTCATTTACCCTAGTTATTACCGTCACCTGGGCAACTTGGGTGTGgtgggtgtggtaaccaaaggccttgtccctcatatctgtaaaaccatacc Alignment from Exonerate_coding2genome CAGTGGCGGCAGAAACTCAGCCCAATTCACCTTGCCTGCTGAATGGCAGTGTGGGCTTGAACATCTTCAGCGCCATCTGTTCTGCGGTGGGCATCATGCTCTTCATCACAGACATCAGTATCTCATCAGGATACATCTACCCTAGCTACTACCCTTACCAGGAGAACTTGGGTGTG ggctttggccatGCCACATCTGTACTCCGTTGTTGTGTTTTAATCTATAGCTGAACAGCAGTATAGACTTGAATATCTT------CATTGCTATTTGTGTGGATATAATGCTCTTCATCTTTGACATTGGTATCTCATCAGGATTCATTTACCCTAGTTATTACCGTCACCTGGGCAACTTGGGTGTGgtgggtgtggtaaccaaaggccttgtccctcatatctgtaaaaccatacc Alignment from GeneWise CTGAATGGCAGTGTGGGCTTGAACATCTTCAGCGCCATCTGTTCTGCGGTGGGCATCATGCTCTTCATCACAGACATCAGTATCTCATCAGGATACATCTACCCTAGCTACTACCCTTACCAGGAGAACTTGGGTGTG ggctttggccatgccacatctgtactccgttgttgtgttttaatctatagCTGAACAGCAGTATAGACTTGAATATCTTCATTGCTATTTGT------GTGGATATAATGCTCTTCATCTTTGACATTGGTATCTCATCAGGATTCATTTACCCTAGTTATTACCGTCACCTGGGCAACTTGGGTGTGgtgggtgtggtaaccaaaggccttgtccctcatatctgtaaaaccatacc #### Ms4a8a_ID3117_3 --> 0 - 0 Original Alignment GCCATCCAGATCCTGATCGGC---CTGGTGCACATCGGCCTGGGCTCCATCATGATCACCAACCTCTTCAGCCACTATACACCTGTCTCCCTCTATGGAGGTTTCCCCTTCTGGGGAGGCATCTGG cagtacctcagatatgaggacttgtgactgttttgtttccatgttcatagGCCATACAGATCTTGATTGGTGGCTTGGTGCACATTAGCTTAGGTTACATCATGATCACCAATCTTTTCACACAG------CCTGTTTCTCTCTATGGAAGCTGCCCCTTTTGGGGAGGCATCTGGgtacggagtttctagtcaaattgtacctagtcgacttttgaagtagcgga Alignment from CESAR GCCATCCAGATCCTGATC---GGCCTGGTGCACATCGGCCTGGGCTCCATCATGATCACCAACCTCTTCAGCCACTATACACCTGTCTCCCTCTATGGAGGTTTCCCCTTCTGGGGAGGCATCTGG cagtacctcagatatgaggacttgtgactgttttgtttccatgttcatagGCCATACAGATCTTGATTGGTGGCTTGGTGCACATTAGCTTAGGTTACATCATGATCACCAATCTTTTCACACAG------CCTGTTTCTCTCTATGGAAGCTGCCCCTTTTGGGGAGGCATCTGGgtacggagtttctagtcaaattgtacctagtcgacttttgaagtagcgga Alignment from Spaln_aa2Genome GCCATCCAGATCCTGATC---GGCCTGGTGCACATCGGCCTGGGCTCCATCATGATCACCAACCTCTTCAGCCACTATACACCTGTCTCCCTCTATGGAGGTTTCCCCTTCTGGGGAGGCATCTGG cagtacctcagatatgaggacttgtgactgttttgtttccatgttcatagGCCATACAGATCTTGATTGGTGGCTTGGTGCACATTAGCTTAGGTTACATCATGATCACCAATCTTTTCACACAG------CCTGTTTCTCTCTATGGAAGCTGCCCCTTTTGGGGAGGCATCTGGgtacggagtttctagtcaaattgtacctagtcgacttttgaagtagcgga Alignment from Spaln_nt2Genome GCCATCCAGATCCTGATCGG---CCTGGTGCACATCGGCCTGGGCTCCATCATGATCACCAACCTCTTCAGCCACTATACACCTGTCTCCCTCTATGGAGGTTTCCCCTTCTGGGGAGGCATCTGG cagtacctcagatatgaggacttgtgactgttttgtttccatgttcatagGCCATACAGATCTTGATTGGTGGCTTGGTGCACATTAGCTTAGGTTACATCATGATCACCAATCTTTTCACACA------GCCTGTTTCTCTCTATGGAAGCTGCCCCTTTTGGGGAGGCATCTGGgtacggagtttctagtcaaattgtacctagtcgacttttgaagtagcgga Alignment from Pairagon GCCATCCAGATCCTGAT---CGGCCTGGTGCACATCGGCCTGGGCTCCATCATGATCACCAACCTCTTCAGCCACTATACACCTGTCTCCCTCTATGGAGGTTTCCCCTTCTGGGGAGGCATCTGG cagtacctcagatatgaggacttgtgactgttttgtttccatgttcatagGCCATACAGATCTTGATTGGTGGCTTGGTGCACATTAGCTTAGGTTACATCATGATCACCAATCTTTTCACACA------GCCTGTTTCTCTCTATGGAAGCTGCCCCTTTTGGGGAGGCATCTGGgtacggagtttctagtcaaattgtacctagtcgacttttgaagtagcgga Alignment from Exonerate_protein2genome GCCATCCAGATCCTGATC---GGCCTGGTGCACATCGGCCTGGGCTCCATCATGATCACCAACCTCTTCAGCCACTATACACCTGTCTCCCTCTATGGAGGTTTCCCCTTCTGGGGAGGCATCTGG cagtacctcagatatgaggacttgtgactgttttgtttccatgttcatagGCCATACAGATCTTGATTGGTGGCTTGGTGCACATTAGCTTAGGTTACATCATGATCACCAATCTTTTCACACAG------CCTGTTTCTCTCTATGGAAGCTGCCCCTTTTGGGGAGGCATCTGGgtacggagtttctagtcaaattgtacctagtcgacttttgaagtagcgga Alignment from Exonerate_coding2genome GCCATCCAGATCCTGATCGGCCTGGT-----GCACATCGGCCTGGGCTCCATCATGATCACCAACCTCTTCAGCCACTATACACCTGTCTCCCTCTATGGAGGTTTCCCCTTCTGGGGAGGCATCTGGTTTATCATTTCAGGATCTCTCT cagtacctcagatatgaggacttgtgactgttttgtttccatgttcatagGCCATACAGATCTTGATTGGT--GGCTTGGTGCACATTAGCTTAGGTTACATCATGATCACCAATCTTTTCACACA------GCCTGTTTCTCTCTATGGAAGCTGCCCCTTTTGGGGAGGCATCTGGGTACGGAGTTTCTAGTCAAATTgtacctagtcgacttttgaagtagcgga Alignment from GeneWise GCCATCCAGATCCTGATCGGC---CTGGTGCACATCGGCCTGGGCTCCATCATGATCACCAACCTCTTCAGCCACTATACACCTGTCTCCCTCTATGGAGGTTTCCCCTTCTGGGGAGGCATCTGG cagtacctcagatatgaggacttgtgactgttttgtttccatgttcatagGCCATACAGATCTTGATTGGTGGCTTGGTGCACATTAGCTTAGGTTACATCATGATCACCAATCTTTTCACACAG------CCTGTTTCTCTCTATGGAAGCTGCCCCTTTTGGGGAGGCATCTGGgtacggagtttctagtcaaattgtacctagtcgacttttgaagtagcgga #### Mta2_ID2531_4 --> 2 - 2 Original Alignment ggGAGTTTGAGGAGGAATCAAAACAGCCAGGGGTCTCCGAGCAGCAGAGACATCAACTGAAGCACCGAGAGCTTTTTCTTTCTCGGCAGTTTGAATCATTACCAGCCACCCACATAag aaaccataattattagcaaagtaggcataaccttgtcactgtctcagcagggGAGTCTGAAGACAAATCTAAACAGCCAGGGGTTTCTGAACAACAGCGGCATCAGTTAAAGCAACTAGAGCTCTTTCTCTCCCGGCAATTTGAGTCATTACCGGCTGCTCACATAaggtaagggaaaacaggggttactgtaaacagcgcactcctgttttataaaa Alignment from CESAR ggGAGTTTGAGGAGGAATCAAAACAGCCAGGGGTCTCCGAGCAGCAGAGACATCAACTGAAGCACCGAGAGCTTTTTCTTTCTCGGCAGTTTGAATCATTACCAGCCACCCACATAag aaaccataattattagcaaagtaggcataaccttgtcactgtctcagcagggGAGTCTGAAGACAAATCTAAACAGCCAGGGGTTTCTGAACAACAGCGGCATCAGTTAAAGCAACTAGAGCTCTTTCTCTCCCGGCAATTTGAGTCATTACCGGCTGCTCACATAaggtaagggaaaacaggggttactgtaaacagcgcactcctgttttataaaa Alignment from Spaln_aa2Genome GGGAGTTTGAGGAGGAATCAAAACAGCCAGGGGTCTCCGAGCAGCAGAGACATCAACTGAAGCACCGAGAGCTTTTTCTTTCTCGGCAGTTTGAATCATTACCAGCCACCCACATAAG aaaccataattattagcaaagtaggcataaccttgtcactgtctcagcagGGGAGTCTGAAGACAAATCTAAACAGCCAGGGGTTTCTGAACAACAGCGGCATCAGTTAAAGCAACTAGAGCTCTTTCTCTCCCGGCAATTTGAGTCATTACCGGCTGCTCACATAAGgtaagggaaaacaggggttactgtaaacagcgcactcctgttttataaaa Alignment from Spaln_nt2Genome GGGAGTTTGAGGAGGAATCAAAACAGCCAGGGGTCTCCGAGCAGCAGAGACATCAACTGAAGCACCGAGAGCTTTTTCTTTCTCGGCAGTTTGAATCATTACCAGCCACCCACATAAG aaaccataattattagcaaagtaggcataaccttgtcactgtctcagcagGGGAGTCTGAAGACAAATCTAAACAGCCAGGGGTTTCTGAACAACAGCGGCATCAGTTAAAGCAACTAGAGCTCTTTCTCTCCCGGCAATTTGAGTCATTACCGGCTGCTCACATAAGgtaagggaaaacaggggttactgtaaacagcgcactcctgttttataaaa Alignment from Pairagon GGGAGTTTGAGGAGGAATCAAAACAGCCAGGGGTCTCCGAGCAGCAGAGACATCAACTGAAGCACCGAGAGCTTTTTCTTTCTCGGCAGTTTGAATCATTACCAGCCACCCACATAAG aaaccataattattagcaaagtaggcataaccttgtcactgtctcagcagGGGAGTCTGAAGACAAATCTAAACAGCCAGGGGTTTCTGAACAACAGCGGCATCAGTTAAAGCAACTAGAGCTCTTTCTCTCCCGGCAATTTGAGTCATTACCGGCTGCTCACATAAGgtaagggaaaacaggggttactgtaaacagcgcactcctgttttataaaa Alignment from Exonerate_protein2genome GGGAGTTTGAGGAGGAATCAAAACAGCCAGGGGTCTCCGAGCAGCAGAGACATCAACTGAAGCACCGAGAGCTTTTTCTTTCTCGGCAGTTTGAATCATTACCAGCCACCCACATAAG aaaccataattattagcaaagtaggcataaccttgtcactgtctcagcagGGGAGTCTGAAGACAAATCTAAACAGCCAGGGGTTTCTGAACAACAGCGGCATCAGTTAAAGCAACTAGAGCTCTTTCTCTCCCGGCAATTTGAGTCATTACCGGCTGCTCACATAAGgtaagggaaaacaggggttactgtaaacagcgcactcctgttttataaaa Alignment from Exonerate_coding2genome aaaccataattattagcaaagtaggcataaccttgtcactgtctcagcaggggagtctgaagacaaatctaaacagccaggggtttctgaacaacagcggcatcagttaaagcaactagagctctttctctcccggcaatttgagtcattaccggctgctcacataaggtaagggaaaacaggggttactgtaaacagcgcactcctgttttataaaa Alignment from GeneWise GGGAGTTTGAGGAGGAATCAAAACAGCCAGGGGTCTCCGAGCAGCAGAGACATCAACTGAAGCACCGAGAGCTTTTTCTTTCTCGGCAGTTTGAATCATTACCAGCCACCCACATAAG aaaccataattattagcaaagtaggcataaccttgtcactgtctcagcagGGGAGTCTGAAGACAAATCTAAACAGCCAGGGGTTTCTGAACAACAGCGGCATCAGTTAAAGCAACTAGAGCTCTTTCTCTCCCGGCAATTTGAGTCATTACCGGCTGCTCACATAAGgtaagggaaaacaggggttactgtaaacagcgcactcctgttttataaaa #### Mta2_ID2533_6 --> 0 - 1 Original Alignment GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGg ggcataatatctgcacaaaaccacattgcacggctactcatgtcatacagGAGTGTTTTTTCTATTCACTGGTGTTTGACCCTGTGCAGAAGACACTTCTAGCAGATCAAGGGGAGATCAGGGTTGGTTGCACATTCCAAGCTGAGATCCCAGATCACTTGGCAGAGggtacgtaaaaatctggtttgaacataattttttctgtcggcaatatgatt Alignment from CESAR GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGg ggcataatatctgcacaaaaccacattgcacggctactcatgtcatacagGAGTGTTTTTTCTATTCACTGGTGTTTGACCCTGTGCAGAAGACACTTCTAGCAGATCAAGGGGAGATCAGGGTTGGTTGCACATTCCAAGCTGAGATCCCAGATCACTTGGCAGAGggtacgtaaaaatctggtttgaacataattttttctgtcggcaatatgatt Alignment from Spaln_aa2Genome GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG ggcataatatctgcacaaaaccacattgcacggctactcatgtcatacagGAGTGTTTTTTCTATTCACTGGTGTTTGACCCTGTGCAGAAGACACTTCTAGCAGATCAAGGGGAGATCAGGGTTGGTTGCACATTCCAAGCTGAGATCCCAGATCACTTGGCAGAGGgtacgtaaaaatctggtttgaacataattttttctgtcggcaatatgatt Alignment from Spaln_nt2Genome GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG ggcataatatctgcacaaaaccacattgcacggctactcatgtcatacagGAGTGTTTTTTCTATTCACTGGTGTTTGACCCTGTGCAGAAGACACTTCTAGCAGATCAAGGGGAGATCAGGGTTGGTTGCACATTCCAAGCTGAGATCCCAGATCACTTGGCAGAGGgtacgtaaaaatctggtttgaacataattttttctgtcggcaatatgatt Alignment from Pairagon GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG ggcataatatctgcacaaaaccacattgcacggctactcatgtcatacagGAGTGTTTTTTCTATTCACTGGTGTTTGACCCTGTGCAGAAGACACTTCTAGCAGATCAAGGGGAGATCAGGGTTGGTTGCACATTCCAAGCTGAGATCCCAGATCACTTGGCAGAGGgtacgtaaaaatctggtttgaacataattttttctgtcggcaatatgatt Alignment from Exonerate_protein2genome GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG ggcataatatctgcacaaaaccacattgcacggctactcatgtcatacagGAGTGTTTTTTCTATTCACTGGTGTTTGACCCTGTGCAGAAGACACTTCTAGCAGATCAAGGGGAGATCAGGGTTGGTTGCACATTCCAAGCTGAGATCCCAGATCACTTGGCAGAGGgtacgtaaaaatctggtttgaacataattttttctgtcggcaatatgatt Alignment from Exonerate_coding2genome ggcataatatctgcacaaaaccacattgcacggctactcatgtcatacaggagtgttttttctattcactggtgtttgaccctgtgcagaagacacttctagcagatcaaggggagatcagggttggttgcacattccaagctgagatcccagatcacttggcagagggtacgtaaaaatctggtttgaacataattttttctgtcggcaatatgatt Alignment from GeneWise TGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG ggcataatatctgcacaaaaccacattgcacggctactcatgtcatacaggagTGTTTTTTCTATTCACTGGTGTTTGACCCTGTGCAGAAGACACTTCTAGCAGATCAAGGGGAGATCAGGGTTGGTTGCACATTCCAAGCTGAGATCCCAGATCACTTGGCAGAGGgtacgtaaaaatctggtttgaacataattttttctgtcggcaatatgatt #### Mta2_ID2543_16 --> 2 - 0 Original Alignment tgGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gacattttcaagccaggtcagatcttcttgcctcctgccttaccacacagttGCACAGGCACTTCTAAAGCCAAAAACACCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGAAACGTTCATATGAGACAgtgagatgaccagaataaaagcatactagggtaattattttactttttta Alignment from CESAR tgGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gacattttcaagccaggtcagatcttcttgcctcctgccttaccacacagttGCACAGGCACTTCTAAAGCCAAAAACACCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGAAACGTTCATATGAGACAgtgagatgaccagaataaaagcatactagggtaattattttactttttta Alignment from Spaln_aa2Genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gacattttcaagccaggtcagatcttcttgcctcctgccttaccacacagTTGCACAGGCACTTCTAAAGCCAAAAACACCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGAAACGTTCATATGAGACAgtgagatgaccagaataaaagcatactagggtaattattttactttttta Alignment from Spaln_nt2Genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gacattttcaagccaggtcagatcttcttgcctcctgccttaccacacagTTGCACAGGCACTTCTAAAGCCAAAAACACCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGAAACGTTCATATGAGACAgtgagatgaccagaataaaagcatactagggtaattattttactttttta Alignment from Pairagon TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gacattttcaagccaggtcagatcttcttgcctcctgccttaccacacagTTGCACAGGCACTTCTAAAGCCAAAAACACCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGAAACGTTCATATGAGACAgtgagatgaccagaataaaagcatactagggtaattattttactttttta Alignment from Exonerate_protein2genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gacattttcaagccaggtcagatcttcttgcctcctgccttaccacacagTTGCACAGGCACTTCTAAAGCCAAAAACACCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGAAACGTTCATATGAGACAgtgagatgaccagaataaaagcatactagggtaattattttactttttta Alignment from Exonerate_coding2genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gacattttcaagccaggtcagatcttcttgcctcctgccttaccacacagTTGCACAGGCACTTCTAAAGCCAAAAACACCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGAAACGTTCATATGAGACAgtgagatgaccagaataaaagcatactagggtaattattttactttttta Alignment from GeneWise TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT gacattttcaagccaggtcagatcttcttgcctcctgccttaccacacagTTGCACAGGCACTTCTAAAGCCAAAAACACCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGAAACGTTCATATGAGACAgtgagatgaccagaataaaagcatactagggtaattattttactttttta #### Myof_ID7445_52 --> 1 - 0 Original Alignment cCGACCGGAAACCTCCTTCCTCTGGTTCACGAACCCTTGCAAGACCATGCGCTTCATCGTGTGGCGCCGGTTCAAGTGGGTGATCATCGGCCTGCTTCTGCTGCTCATCCTGTTGCTGTTCGTGGCTGTGCTCCTGTACTCTCTTCCG tttgtctgttttttgcaaacttgtcagaaacagaccgttttgtctcatagcCGCCCAGAGACATCTTATTTTTGGTTCACAAACCCTTGCAAGACAATGTGCTTTATAGTCTGGCGACGGTATAAATGGGTTATCATTGGCCTGCTCTTGTTGTTCATCCTCTTGCTGCTTGTAGCTGTACTTCTGCACTCCCTGCCTgtatccgaaatgctatgaaggctaataagtctatggatctactcagtgta Alignment from CESAR cCGACCGGAAACCTCCTTCCTCTGGTTCACGAACCCTTGCAAGACCATGCGCTTCATCGTGTGGCGCCGGTTCAAGTGGGTGATCATCGGCCTGCTTCTGCTGCTCATCCTGTTGCTGTTCGTGGCTGTGCTCCTGTACTCTCTTCCG tttgtctgttttttgcaaacttgtcagaaacagaccgttttgtctcatagcCGCCCAGAGACATCTTATTTTTGGTTCACAAACCCTTGCAAGACAATGTGCTTTATAGTCTGGCGACGGTATAAATGGGTTATCATTGGCCTGCTCTTGTTGTTCATCCTCTTGCTGCTTGTAGCTGTACTTCTGCACTCCCTGCCTgtatccgaaatgctatgaaggctaataagtctatggatctactcagtgta Alignment from Spaln_aa2Genome CCGACCGGAAACCTCCTTCCTCTGGTTCACGAACCCTTGCAAGACCATGCGCTTCATCGTGTGGCGCCGGTTCAAGTGGGTGATCATCGGCCTGCTTCTGCTGCTCATCCTGTTGCTGTTCGTGGCTGTGCTCCTGTACTCTCTTCCG tttgtctgttttttgcaaacttgtcagaaacagaccgttttgtctcatagCCGCCCAGAGACATCTTATTTTTGGTTCACAAACCCTTGCAAGACAATGTGCTTTATAGTCTGGCGACGGTATAAATGGGTTATCATTGGCCTGCTCTTGTTGTTCATCCTCTTGCTGCTTGTAGCTGTACTTCTGCACTCCCTGCCTgtatccgaaatgctatgaaggctaataagtctatggatctactcagtgta Alignment from Spaln_nt2Genome CCGACCGGAAACCTCCTTCCTCTGGTTCACGAACCCTTGCAAGACCATGCGCTTCATCGTGTGGCGCCGGTTCAAGTGGGTGATCATCGGCCTGCTTCTGCTGCTCATCCTGTTGCTGTTCGTGGCTGTGCTCCTGTACTCTCTTCCG tttgtctgttttttgcaaacttgtcagaaacagaccgttttgtctcatagCCGCCCAGAGACATCTTATTTTTGGTTCACAAACCCTTGCAAGACAATGTGCTTTATAGTCTGGCGACGGTATAAATGGGTTATCATTGGCCTGCTCTTGTTGTTCATCCTCTTGCTGCTTGTAGCTGTACTTCTGCACTCCCTGCCTgtatccgaaatgctatgaaggctaataagtctatggatctactcagtgta Alignment from Pairagon CCGACCGGAAACCTCCTTCCTCTGGTTCACGAACCCTTGCAAGACCATGCGCTTCATCGTGTGGCGCCGGTTCAAGTGGGTGATCATCGGCCTGCTTCTGCTGCTCATCCTGTTGCTGTTCGTGGCTGTGCTCCTGTACTCTCTTCCG tttgtctgttttttgcaaacttgtcagaaacagaccgttttgtctcatagCCGCCCAGAGACATCTTATTTTTGGTTCACAAACCCTTGCAAGACAATGTGCTTTATAGTCTGGCGACGGTATAAATGGGTTATCATTGGCCTGCTCTTGTTGTTCATCCTCTTGCTGCTTGTAGCTGTACTTCTGCACTCCCTGCCTgtatccgaaatgctatgaaggctaataagtctatggatctactcagtgta Alignment from Exonerate_protein2genome CCGACCGGAAACCTCCTTCCTCTGGTTCACGAACCCTTGCAAGACCATGCGCTTCATCGTGTGGCGCCGGTTCAAGTGGGTGATCATCGGCCTGCTTCTGCTGCTCATCCTGTTGCTGTTCGTGGCTGTGCTCCTGTACTCTCTTCCG tttgtctgttttttgcaaacttgtcagaaacagaccgttttgtctcatagCCGCCCAGAGACATCTTATTTTTGGTTCACAAACCCTTGCAAGACAATGTGCTTTATAGTCTGGCGACGGTATAAATGGGTTATCATTGGCCTGCTCTTGTTGTTCATCCTCTTGCTGCTTGTAGCTGTACTTCTGCACTCCCTGCCTgtatccgaaatgctatgaaggctaataagtctatggatctactcagtgta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCGACCGGAAACCTCCTTCCTCTGGTTCACGAACCCTTGCAAGACCATGCGCTTCATCGTGTGGCGCCGGTTCAAGTGGGTGATCATCGGCCTGCTTCTGCTGCTCATCCTGTTGCTGTTCGTGGCTGTGCTCCTGTACTCTCTTCCG tttgtctgttttttgcaaacttgtcagaaacagaccgttttgtctcatagCCGCCCAGAGACATCTTATTTTTGGTTCACAAACCCTTGCAAGACAATGTGCTTTATAGTCTGGCGACGGTATAAATGGGTTATCATTGGCCTGCTCTTGTTGTTCATCCTCTTGCTGCTTGTAGCTGTACTTCTGCACTCCCTGCCTgtatccgaaatgctatgaaggctaataagtctatggatctactcagtgta #### Myof_ID7448_50 --> 2 - 0 Original Alignment gtTTTCTGGAACTTGACTTACATCGTACGATCATCCCAGCCAAGACATCAGAGAAATGCAGTTTGGACATGATTCCAGACCTCAAAGCCATGGACCCTCTTAAAGCTAAGACTGCCTCACTCTTTGAACAGAGGTCCATGAAAGGATGGTGGCCGTGCTACGCAGACAAAGATGGCACCCGGGTGATGGCT atgagtttggtgtgaagccattgtctgaccctctcctgatcctccctcaggtTTCCTTGAACTTGATTTGCAACGCATGATCATTCCAGCCAAGACATCAGAGAGATGCAGCTTGGACATGATCCCAGACCTCAAAGCCATGGATCCCCTCAAAGCTAAGACTGCCTCACTCTTTGAGCAGAGATCTATGGAAGGATGGTGGCCCTGTTATGCAGACAAGGATGGCACCCGGGTGATGGCTgtgagcggatcaggggaaattttcttggctatttatagatgctccatcaa Alignment from CESAR gtTTTCTGGAACTTGACTTACATCGTACGATCATCCCAGCCAAGACATCAGAGAAATGCAGTTTGGACATGATTCCAGACCTCAAAGCCATGGACCCTCTTAAAGCTAAGACTGCCTCACTCTTTGAACAGAGGTCCATGAAAGGATGGTGGCCGTGCTACGCAGACAAAGATGGCACCCGGGTGATGGCT atgagtttggtgtgaagccattgtctgaccctctcctgatcctccctcaggtTTCCTTGAACTTGATTTGCAACGCATGATCATTCCAGCCAAGACATCAGAGAGATGCAGCTTGGACATGATCCCAGACCTCAAAGCCATGGATCCCCTCAAAGCTAAGACTGCCTCACTCTTTGAGCAGAGATCTATGGAAGGATGGTGGCCCTGTTATGCAGACAAGGATGGCACCCGGGTGATGGCTgtgagcggatcaggggaaattttcttggctatttatagatgctccatcaa Alignment from Spaln_aa2Genome GTTTTCTGGAACTTGACTTACATCGTACGATCATCCCAGCCAAGACATCAGAGAAATGCAGTTTGGACATGATTCCAGACCTCAAAGCCATGGACCCTCTTAAAGCTAAGACTGCCTCACTCTTTGAACAGAGGTCCATGAAAGGATGGTGGCCGTGCTACGCAGACAAAGATGGCACCCGGGTGATGGCT atgagtttggtgtgaagccattgtctgaccctctcctgatcctccctcagGTTTCCTTGAACTTGATTTGCAACGCATGATCATTCCAGCCAAGACATCAGAGAGATGCAGCTTGGACATGATCCCAGACCTCAAAGCCATGGATCCCCTCAAAGCTAAGACTGCCTCACTCTTTGAGCAGAGATCTATGGAAGGATGGTGGCCCTGTTATGCAGACAAGGATGGCACCCGGGTGATGGCTgtgagcggatcaggggaaattttcttggctatttatagatgctccatcaa Alignment from Spaln_nt2Genome GTTTTCTGGAACTTGACTTACATCGTACGATCATCCCAGCCAAGACATCAGAGAAATGCAGTTTGGACATGATTCCAGACCTCAAAGCCATGGACCCTCTTAAAGCTAAGACTGCCTCACTCTTTGAACAGAGGTCCATGAAAGGATGGTGGCCGTGCTACGCAGACAAAGATGGCACCCGGGTGATGGCT atgagtttggtgtgaagccattgtctgaccctctcctgatcctccctcagGTTTCCTTGAACTTGATTTGCAACGCATGATCATTCCAGCCAAGACATCAGAGAGATGCAGCTTGGACATGATCCCAGACCTCAAAGCCATGGATCCCCTCAAAGCTAAGACTGCCTCACTCTTTGAGCAGAGATCTATGGAAGGATGGTGGCCCTGTTATGCAGACAAGGATGGCACCCGGGTGATGGCTgtgagcggatcaggggaaattttcttggctatttatagatgctccatcaa Alignment from Pairagon GTTTTCTGGAACTTGACTTACATCGTACGATCATCCCAGCCAAGACATCAGAGAAATGCAGTTTGGACATGATTCCAGACCTCAAAGCCATGGACCCTCTTAAAGCTAAGACTGCCTCACTCTTTGAACAGAGGTCCATGAAAGGATGGTGGCCGTGCTACGCAGACAAAGATGGCACCCGGGTGATGGCT atgagtttggtgtgaagccattgtctgaccctctcctgatcctccctcagGTTTCCTTGAACTTGATTTGCAACGCATGATCATTCCAGCCAAGACATCAGAGAGATGCAGCTTGGACATGATCCCAGACCTCAAAGCCATGGATCCCCTCAAAGCTAAGACTGCCTCACTCTTTGAGCAGAGATCTATGGAAGGATGGTGGCCCTGTTATGCAGACAAGGATGGCACCCGGGTGATGGCTgtgagcggatcaggggaaattttcttggctatttatagatgctccatcaa Alignment from Exonerate_protein2genome GTTTTCTGGAACTTGACTTACATCGTACGATCATCCCAGCCAAGACATCAGAGAAATGCAGTTTGGACATGATTCCAGACCTCAAAGCCATGGACCCTCTTAAAGCTAAGACTGCCTCACTCTTTGAACAGAGGTCCATGAAAGGATGGTGGCCGTGCTACGCAGACAAAGATGGCACCCGGGTGATGGCT atgagtttggtgtgaagccattgtctgaccctctcctgatcctccctcagGTTTCCTTGAACTTGATTTGCAACGCATGATCATTCCAGCCAAGACATCAGAGAGATGCAGCTTGGACATGATCCCAGACCTCAAAGCCATGGATCCCCTCAAAGCTAAGACTGCCTCACTCTTTGAGCAGAGATCTATGGAAGGATGGTGGCCCTGTTATGCAGACAAGGATGGCACCCGGGTGATGGCTgtgagcggatcaggggaaattttcttggctatttatagatgctccatcaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTTTTCTGGAACTTGACTTACATCGTACGATCATCCCAGCCAAGACATCAGAGAAATGCAGTTTGGACATGATTCCAGACCTCAAAGCCATGGACCCTCTTAAAGCTAAGACTGCCTCACTCTTTGAACAGAGGTCCATGAAAGGATGGTGGCCGTGCTACGCAGACAAAGATGGCACCCGGGTGATGGCT atgagtttggtgtgaagccattgtctgaccctctcctgatcctccctcagGTTTCCTTGAACTTGATTTGCAACGCATGATCATTCCAGCCAAGACATCAGAGAGATGCAGCTTGGACATGATCCCAGACCTCAAAGCCATGGATCCCCTCAAAGCTAAGACTGCCTCACTCTTTGAGCAGAGATCTATGGAAGGATGGTGGCCCTGTTATGCAGACAAGGATGGCACCCGGGTGATGGCTgtgagcggatcaggggaaattttcttggctatttatagatgctccatcaa #### Myof_ID7449_49 --> 0 - 1 Original Alignment GAGCATTTCTGGAGTATTGATCAAACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCCTGGACGACTACTTGg gagtttgaaggaaatacaatcaagataagtaactgagtgttactttacagGAGCACTTTTGGAGTATTGATCAGACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCTTGGACGACTACTTAggtaggacctactttttaggtaattataatgtcaagactgcccatgaaatc Alignment from CESAR GAGCATTTCTGGAGTATTGATCAAACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCCTGGACGACTACTTGg gagtttgaaggaaatacaatcaagataagtaactgagtgttactttacagGAGCACTTTTGGAGTATTGATCAGACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCTTGGACGACTACTTAggtaggacctactttttaggtaattataatgtcaagactgcccatgaaatc Alignment from Spaln_aa2Genome GAGCATTTCTGGAGTATTGATCAAACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCCTGGACGACTACTTGG gagtttgaaggaaatacaatcaagataagtaactgagtgttactttacagGAGCACTTTTGGAGTATTGATCAGACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCTTGGACGACTACTTAGgtaggacctactttttaggtaattataatgtcaagactgcccatgaaatc Alignment from Spaln_nt2Genome GAGCATTTCTGGAGTATTGATCAAACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCCTGGACGACTACTTGG gagtttgaaggaaatacaatcaagataagtaactgagtgttactttacagGAGCACTTTTGGAGTATTGATCAGACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCTTGGACGACTACTTAGgtaggacctactttttaggtaattataatgtcaagactgcccatgaaatc Alignment from Pairagon GAGCATTTCTGGAGTATTGATCAAACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCCTGGACGACTACTTGG gagtttgaaggaaatacaatcaagataagtaactgagtgttactttacagGAGCACTTTTGGAGTATTGATCAGACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCTTGGACGACTACTTAGgtaggacctactttttaggtaattataatgtcaagactgcccatgaaatc Alignment from Exonerate_protein2genome GAGCATTTCTGGAGTATTGATCAAACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCCTGGACGACTACTTGG gagtttgaaggaaatacaatcaagataagtaactgagtgttactttacagGAGCACTTTTGGAGTATTGATCAGACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCTTGGACGACTACTTAGgtaggacctactttttaggtaattataatgtcaagactgcccatgaaatc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAGCATTTCTGGAGTATTGATCAAACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCCTGGACGACTACTTGG gagtttgaaggaaatacaatcaagataagtaactgagtgttactttacagGAGCACTTTTGGAGTATTGATCAGACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCTTGGACGACTACTTAGgtaggacctactttttaggtaattataatgtcaagactgcccatgaaatc #### Myof_ID7462_38 --> 0 - 0 Original Alignment CTGTCGGAAAAG cagaagtgtccatcacatattgcctccccctggaattttctccttcttagCTTTCAGGAAAGgtactgattagattgatacattagaaggtacatgcaatcctttggtagtt Alignment from CESAR CTGTCGGAAAAG cagaagtgtccatcacatattgcctccccctggaattttctccttcttagCTTTCAGGAAAGgtactgattagattgatacattagaaggtacatgcaatcctttggtagtt Alignment from Spaln_aa2Genome CTGTCGGAAAAG cagaagtgtccatcacatattgcctccccctggaattttctccttcttagCTTTCAGGAAAGgtactgattagattgatacattagaaggtacatgcaatcctttggtagtt Alignment from Spaln_nt2Genome CTGTCGGAAAAG cagaagtgtccatcacatattgcctccccctggaattttctccttcttagCTTTCAGGAAAGgtactgattagattgatacattagaaggtacatgcaatcctttggtagtt Alignment from Pairagon cagaagtgtccatcacatattgcctccccctggaattttctccttcttagctttcaggaaaggtactgattagattgatacattagaaggtacatgcaatcctttggtagtt Alignment from Exonerate_protein2genome cagaagtgtccatcacatattgcctccccctggaattttctccttcttagctttcaggaaaggtactgattagattgatacattagaaggtacatgcaatcctttggtagtt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise cagaagtgtccatcacatattgcctccccctggaattttctccttcttagctttcaggaaaggtactgattagattgatacattagaaggtacatgcaatcctttggtagtt #### Myof_ID7466_36 --> 0 - 1 Original Alignment TTCTTGCCCAAGGAAGAATTGTACATGCCTCCGCTGGTGATCAAGGTCATTGATCACAGGCAGTTTGGGCGGAAGCCTGTGGTTGGCCAATGCACCATTGACCACCTGGACCGCTTTCGGTGTGATCCATATGCAGGAAAGGAGGATATTGTACCACAACTAAAAg caggctaaaccatcccttggtagaagacacctagctttcttttcttgcagCTACTACCCAAGCATGAATTGTACATGCCTCCCCTGGTGATCAAGGTCATTGACCAGAGGCAATCTGGACAAAAGCCAGTGGTTGGCCAGTGCACCATTGACCACCTAGACCATTTTCAGTGCGATCCATACACAGAAAAGGATGATATTGTCCCGCAGTTAAAAggtgagtcttcaagagccatttggtgttaattctctggtgaatccctctca Alignment from CESAR TTCTTGCCCAAGGAAGAATTGTACATGCCTCCGCTGGTGATCAAGGTCATTGATCACAGGCAGTTTGGGCGGAAGCCTGTGGTTGGCCAATGCACCATTGACCACCTGGACCGCTTTCGGTGTGATCCATATGCAGGAAAGGAGGATATTGTACCACAACTAAAAg caggctaaaccatcccttggtagaagacacctagctttcttttcttgcagCTACTACCCAAGCATGAATTGTACATGCCTCCCCTGGTGATCAAGGTCATTGACCAGAGGCAATCTGGACAAAAGCCAGTGGTTGGCCAGTGCACCATTGACCACCTAGACCATTTTCAGTGCGATCCATACACAGAAAAGGATGATATTGTCCCGCAGTTAAAAggtgagtcttcaagagccatttggtgttaattctctggtgaatccctctca Alignment from Spaln_aa2Genome TTCTTGCCCAAGGAAGAATTGTACATGCCTCCGCTGGTGATCAAGGTCATTGATCACAGGCAGTTTGGGCGGAAGCCTGTGGTTGGCCAATGCACCATTGACCACCTGGACCGCTTTCGGTGTGATCCATATGCAGGAAAGGAGGATATTGTACCACAACTAAAAG caggctaaaccatcccttggtagaagacacctagctttcttttcttgcagCTACTACCCAAGCATGAATTGTACATGCCTCCCCTGGTGATCAAGGTCATTGACCAGAGGCAATCTGGACAAAAGCCAGTGGTTGGCCAGTGCACCATTGACCACCTAGACCATTTTCAGTGCGATCCATACACAGAAAAGGATGATATTGTCCCGCAGTTAAAAGgtgagtcttcaagagccatttggtgttaattctctggtgaatccctctca Alignment from Spaln_nt2Genome TTCTTGCCCAAGGAAGAATTGTACATGCCTCCGCTGGTGATCAAGGTCATTGATCACAGGCAGTTTGGGCGGAAGCCTGTGGTTGGCCAATGCACCATTGACCACCTGGACCGCTTTCGGTGTGATCCATATGCAGGAAAGGAGGATATTGTACCACAACTAAAAG caggctaaaccatcccttggtagaagacacctagctttcttttcttgcagCTACTACCCAAGCATGAATTGTACATGCCTCCCCTGGTGATCAAGGTCATTGACCAGAGGCAATCTGGACAAAAGCCAGTGGTTGGCCAGTGCACCATTGACCACCTAGACCATTTTCAGTGCGATCCATACACAGAAAAGGATGATATTGTCCCGCAGTTAAAAGgtgagtcttcaagagccatttggtgttaattctctggtgaatccctctca Alignment from Pairagon TTCTTGCCCAAGGAAGAATTGTACATGCCTCCGCTGGTGATCAAGGTCATTGATCACAGGCAGTTTGGGCGGAAGCCTGTGGTTGGCCAATGCACCATTGACCACCTGGACCGCTTTCGGTGTGATCCATATGCAGGAAAGGAGGATATTGTACCACAACTAAAAG caggctaaaccatcccttggtagaagacacctagctttcttttcttgcagCTACTACCCAAGCATGAATTGTACATGCCTCCCCTGGTGATCAAGGTCATTGACCAGAGGCAATCTGGACAAAAGCCAGTGGTTGGCCAGTGCACCATTGACCACCTAGACCATTTTCAGTGCGATCCATACACAGAAAAGGATGATATTGTCCCGCAGTTAAAAGgtgagtcttcaagagccatttggtgttaattctctggtgaatccctctca Alignment from Exonerate_protein2genome TTCTTGCCCAAGGAAGAATTGTACATGCCTCCGCTGGTGATCAAGGTCATTGATCACAGGCAGTTTGGGCGGAAGCCTGTGGTTGGCCAATGCACCATTGACCACCTGGACCGCTTTCGGTGTGATCCATATGCAGGAAAGGAGGATATTGTACCACAACTAAAAG caggctaaaccatcccttggtagaagacacctagctttcttttcttgcagCTACTACCCAAGCATGAATTGTACATGCCTCCCCTGGTGATCAAGGTCATTGACCAGAGGCAATCTGGACAAAAGCCAGTGGTTGGCCAGTGCACCATTGACCACCTAGACCATTTTCAGTGCGATCCATACACAGAAAAGGATGATATTGTCCCGCAGTTAAAAGgtgagtcttcaagagccatttggtgttaattctctggtgaatccctctca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TTCTTGCCCAAGGAAGAATTGTACATGCCTCCGCTGGTGATCAAGGTCATTGATCACAGGCAGTTTGGGCGGAAGCCTGTGGTTGGCCAATGCACCATTGACCACCTGGACCGCTTTCGGTGTGATCCATATGCAGGAAAGGAGGATATTGTACCACAACTAAAAG caggctaaaccatcccttggtagaagacacctagctttcttttcttgcagCTACTACCCAAGCATGAATTGTACATGCCTCCCCTGGTGATCAAGGTCATTGACCAGAGGCAATCTGGACAAAAGCCAGTGGTTGGCCAGTGCACCATTGACCACCTAGACCATTTTCAGTGCGATCCATACACAGAAAAGGATGATATTGTCCCGCAGTTAAAAGgtgagtcttcaagagccatttggtgttaattctctggtgaatccctctca #### Myof_ID7468_34 --> 0 - 0 Original Alignment GATGGCTCCAACCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tgtgtcttaatgagagggaagacttatttttgtgccgcttttctgatcagGACGGATCCAATCTTCCCATCCTTCCATCTCAGAGAGCACCCAACCTATACATGGTCCCACAGGGGATCAGACCTGTGGTACCACTCACTGCCATTGAAgtaaaaatttgataaccctccttaagctgtgcaaatgcagggcatatgtc Alignment from CESAR GATGGCTCCAACCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tgtgtcttaatgagagggaagacttatttttgtgccgcttttctgatcagGACGGATCCAATCTTCCCATCCTTCCATCTCAGAGAGCACCCAACCTATACATGGTCCCACAGGGGATCAGACCTGTGGTACCACTCACTGCCATTGAAgtaaaaatttgataaccctccttaagctgtgcaaatgcagggcatatgtc Alignment from Spaln_aa2Genome GATGGCTCCAACCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tgtgtcttaatgagagggaagacttatttttgtgccgcttttctgatcagGACGGATCCAATCTTCCCATCCTTCCATCTCAGAGAGCACCCAACCTATACATGGTCCCACAGGGGATCAGACCTGTGGTACCACTCACTGCCATTGAAgtaaaaatttgataaccctccttaagctgtgcaaatgcagggcatatgtc Alignment from Spaln_nt2Genome GATGGCTCCAACCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tgtgtcttaatgagagggaagacttatttttgtgccgcttttctgatcagGACGGATCCAATCTTCCCATCCTTCCATCTCAGAGAGCACCCAACCTATACATGGTCCCACAGGGGATCAGACCTGTGGTACCACTCACTGCCATTGAAgtaaaaatttgataaccctccttaagctgtgcaaatgcagggcatatgtc Alignment from Pairagon GATGGCTCCAACCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tgtgtcttaatgagagggaagacttatttttgtgccgcttttctgatcagGACGGATCCAATCTTCCCATCCTTCCATCTCAGAGAGCACCCAACCTATACATGGTCCCACAGGGGATCAGACCTGTGGTACCACTCACTGCCATTGAAgtaaaaatttgataaccctccttaagctgtgcaaatgcagggcatatgtc Alignment from Exonerate_protein2genome GATGGCTCCAACCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tgtgtcttaatgagagggaagacttatttttgtgccgcttttctgatcagGACGGATCCAATCTTCCCATCCTTCCATCTCAGAGAGCACCCAACCTATACATGGTCCCACAGGGGATCAGACCTGTGGTACCACTCACTGCCATTGAAgtaaaaatttgataaccctccttaagctgtgcaaatgcagggcatatgtc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GATGGCTCCAACCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tgtgtcttaatgagagggaagacttatttttgtgccgcttttctgatcagGACGGATCCAATCTTCCCATCCTTCCATCTCAGAGAGCACCCAACCTATACATGGTCCCACAGGGGATCAGACCTGTGGTACCACTCACTGCCATTGAAgtaaaaatttgataaccctccttaagctgtgcaaatgcagggcatatgtc #### Myof_ID7469_33 --> 0 - 0 Original Alignment GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG cataaagtttttgctggaacaatgggtgaacagtgctcttgctcccctagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCTGGTGAAACTGAACTCCCAAACAGATGTTACACCTAAACCTCTCTGGCATCCTGTTATGAATGGGGACAAAGCTTGTGCAGATGTCCTTATCACAGCAGAGTTGATTTTGAGGAACAAGgtgagtcctattctgatttgcacatttctcagtgaagtaatgagatacat Alignment from CESAR GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG cataaagtttttgctggaacaatgggtgaacagtgctcttgctcccctagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCTGGTGAAACTGAACTCCCAAACAGATGTTACACCTAAACCTCTCTGGCATCCTGTTATGAATGGGGACAAAGCTTGTGCAGATGTCCTTATCACAGCAGAGTTGATTTTGAGGAACAAGgtgagtcctattctgatttgcacatttctcagtgaagtaatgagatacat Alignment from Spaln_aa2Genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG cataaagtttttgctggaacaatgggtgaacagtgctcttgctcccctagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCTGGTGAAACTGAACTCCCAAACAGATGTTACACCTAAACCTCTCTGGCATCCTGTTATGAATGGGGACAAAGCTTGTGCAGATGTCCTTATCACAGCAGAGTTGATTTTGAGGAACAAGgtgagtcctattctgatttgcacatttctcagtgaagtaatgagatacat Alignment from Spaln_nt2Genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG cataaagtttttgctggaacaatgggtgaacagtgctcttgctcccctagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCTGGTGAAACTGAACTCCCAAACAGATGTTACACCTAAACCTCTCTGGCATCCTGTTATGAATGGGGACAAAGCTTGTGCAGATGTCCTTATCACAGCAGAGTTGATTTTGAGGAACAAGgtgagtcctattctgatttgcacatttctcagtgaagtaatgagatacat Alignment from Pairagon GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG cataaagtttttgctggaacaatgggtgaacagtgctcttgctcccctagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCTGGTGAAACTGAACTCCCAAACAGATGTTACACCTAAACCTCTCTGGCATCCTGTTATGAATGGGGACAAAGCTTGTGCAGATGTCCTTATCACAGCAGAGTTGATTTTGAGGAACAAGgtgagtcctattctgatttgcacatttctcagtgaagtaatgagatacat Alignment from Exonerate_protein2genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG cataaagtttttgctggaacaatgggtgaacagtgctcttgctcccctagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCTGGTGAAACTGAACTCCCAAACAGATGTTACACCTAAACCTCTCTGGCATCCTGTTATGAATGGGGACAAAGCTTGTGCAGATGTCCTTATCACAGCAGAGTTGATTTTGAGGAACAAGgtgagtcctattctgatttgcacatttctcagtgaagtaatgagatacat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG cataaagtttttgctggaacaatgggtgaacagtgctcttgctcccctagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCCCCCCTGGTGAAACTGAACTCCCAAACAGATGTTACACCTAAACCTCTCTGGCATCCTGTTATGAATGGGGACAAAGCTTGTGCAGATGTCCTTATCACAGCAGAGTTGATTTTGAGGAACAAGgtgagtcctattctgatttgcacatttctcagtgaagtaatgagatacat #### Myof_ID7473_29 --> 0 - 0 Original Alignment GCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCGTTAATCGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGCAGGCGCTGGAGGAGGAAAATGGCCCCTTCTGAGACACACGGTGCCGCTGCCATCTTTAAACTCGAAGGTGCCCTT ctactatggtgagacctcatgtctagttactttgatctcttcctacacagGCCACGGAAGAGCTTGAAGACCGGGAAGGTTGGGAATATGCTTCACTAATTGGTTGGAAATTCCACTGGAAACAGCGTAGTTCAGACACCTTCCGTCGAAGGCGCTGGAGGAGGAAAATGACCCCCTCCGAGACATATGGTGCCACTGCCATTTTTAGGCTTGAAGGTGCCCTTgtgaggtgacaacaggtttctctttacaaatgtgaatggtgtgccttctg Alignment from CESAR GCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCGTTAATCGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGCAGGCGCTGGAGGAGGAAAATGGCCCCTTCTGAGACACACGGTGCCGCTGCCATCTTTAAACTCGAAGGTGCCCTT ctactatggtgagacctcatgtctagttactttgatctcttcctacacagGCCACGGAAGAGCTTGAAGACCGGGAAGGTTGGGAATATGCTTCACTAATTGGTTGGAAATTCCACTGGAAACAGCGTAGTTCAGACACCTTCCGTCGAAGGCGCTGGAGGAGGAAAATGACCCCCTCCGAGACATATGGTGCCACTGCCATTTTTAGGCTTGAAGGTGCCCTTgtgaggtgacaacaggtttctctttacaaatgtgaatggtgtgccttctg Alignment from Spaln_aa2Genome GCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCGTTAATCGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGCAGGCGCTGGAGGAGGAAAATGGCCCCTTCTGAGACACACGGTGCCGCTGCCATCTTTAAACTCGAAGGTGCCCTT ctactatggtgagacctcatgtctagttactttgatctcttcctacacagGCCACGGAAGAGCTTGAAGACCGGGAAGGTTGGGAATATGCTTCACTAATTGGTTGGAAATTCCACTGGAAACAGCGTAGTTCAGACACCTTCCGTCGAAGGCGCTGGAGGAGGAAAATGACCCCCTCCGAGACATATGGTGCCACTGCCATTTTTAGGCTTGAAGGTGCCCTTgtgaggtgacaacaggtttctctttacaaatgtgaatggtgtgccttctg Alignment from Spaln_nt2Genome GCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCGTTAATCGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGCAGGCGCTGGAGGAGGAAAATGGCCCCTTCTGAGACACACGGTGCCGCTGCCATCTTTAAACTCGAAGGTGCCCTTGGG-- ctactatggtgagacctcatgtctagttactttgatctcttcctacacagGCCACGGAAGAGCTTGAAGACCGGGAAGGTTGGGAATATGCTTCACTAATTGGTTGGAAATTCCACTGGAAACAGCGTAGTTCAGACACCTTCCGTCGAAGGCGCTGGAGGAGGAAAATGACCCCCTCCGAGACATATGGTGCCACTGCCATTTTTAGGCTTGAAGGTGCCCTTGTGAGgtgacaacaggtttctctttacaaatgtgaatggtgtgccttctg Alignment from Pairagon GCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCGTTAATCGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGCAGGCGCTGGAGGAGGAAAATGGCCCCTTCTGAGACACACGGTGCCGCTGCCATCTTTAAACTCGAAGGTGCCCTT ctactatggtgagacctcatgtctagttactttgatctcttcctacacagGCCACGGAAGAGCTTGAAGACCGGGAAGGTTGGGAATATGCTTCACTAATTGGTTGGAAATTCCACTGGAAACAGCGTAGTTCAGACACCTTCCGTCGAAGGCGCTGGAGGAGGAAAATGACCCCCTCCGAGACATATGGTGCCACTGCCATTTTTAGGCTTGAAGGTGCCCTTgtgaggtgacaacaggtttctctttacaaatgtgaatggtgtgccttctg Alignment from Exonerate_protein2genome GCCATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCGTTAATCGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGCAGGCGCTGGAGGAGGAAAATGGCCCCTTCTGAGACACACGGTGCCGCTGCCATCTTTAAACTCGAAGGTGCCCTTGGG ctactatggtgagacctcatgtctagttactttgatctcttcctacacagGCCACGGAAGAGCTTGAAGACCGGGAAGGTTGGGAATATGCTTCACTAATTGGTTGGAAATTCCACTGGAAACAGCGTAGTTCAGACACCTTCCGTCGAAGGCGCTGGAGGAGGAAAATGACCCCCTCCGAGACATATGGTGCCACTGCCATTTTTAGGCTTGAAGGTGCCCTT---gtgaggtgacaacaggtttctctttacaaatgtgaatggtgtgcctt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ---ATGGAAGAACTTGAAGACCGGGAGGGCTGGGAATATGCTTCGTTAATCGGCTGGAAATTCCACTGGAAACAGCGCAGTTCAGACACCTTTCGCCGCAGGCGCTGGAGGAGGAAAATGGCCCCTTCTGAGACACACGGTGCCGCTGCCATCTTTAAACTCGAAGGTGCCCTT ctactatggtgagacctcatgtctagttactttgatctcttcctacacagGCCACGGAAGAGCTTGAAGACCGGGAAGGTTGGGAATATGCTTCACTAATTGGTTGGAAATTCCACTGGAAACAGCGTAGTTCAGACACCTTCCGTCGAAGGCGCTGGAGGAGGAAAATGACCCCCTCCGAGACATATGGTGCCACTGCCATTTTTAGGCTTGAAGGTGCCCTTgtgaggtgacaacaggtttctctttacaaatgtgaatggtgtgccttctg #### Myof_ID7475_27 --> 0 - 1 Original Alignment AATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAGGATGACGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAg cctcattggtactctcatctggtcagttatatttttattgcattctgcagAATGGAGATAAGGGGGCATCCCCTAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAAGATGATGCATGGATTTATGACATAAATCGGGCAGTGGATGAGGAAggtaattctgtgtgtgtttagtcccaattatttgagtatgcatttacatcc Alignment from CESAR AATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAGGATGACGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAg cctcattggtactctcatctggtcagttatatttttattgcattctgcagAATGGAGATAAGGGGGCATCCCCTAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAAGATGATGCATGGATTTATGACATAAATCGGGCAGTGGATGAGGAAggtaattctgtgtgtgtttagtcccaattatttgagtatgcatttacatcc Alignment from Spaln_aa2Genome AATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAGGATGACGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAG cctcattggtactctcatctggtcagttatatttttattgcattctgcagAATGGAGATAAGGGGGCATCCCCTAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAAGATGATGCATGGATTTATGACATAAATCGGGCAGTGGATGAGGAAGgtaattctgtgtgtgtttagtcccaattatttgagtatgcatttacatcc Alignment from Spaln_nt2Genome AATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAGGATGACGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAG cctcattggtactctcatctggtcagttatatttttattgcattctgcagAATGGAGATAAGGGGGCATCCCCTAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAAGATGATGCATGGATTTATGACATAAATCGGGCAGTGGATGAGGAAGgtaattctgtgtgtgtttagtcccaattatttgagtatgcatttacatcc Alignment from Pairagon AATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAGGATGACGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAG cctcattggtactctcatctggtcagttatatttttattgcattctgcagAATGGAGATAAGGGGGCATCCCCTAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAAGATGATGCATGGATTTATGACATAAATCGGGCAGTGGATGAGGAAGgtaattctgtgtgtgtttagtcccaattatttgagtatgcatttacatcc Alignment from Exonerate_protein2genome AATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAGGATGACGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAG cctcattggtactctcatctggtcagttatatttttattgcattctgcagAATGGAGATAAGGGGGCATCCCCTAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAAGATGATGCATGGATTTATGACATAAATCGGGCAGTGGATGAGGAAGgtaattctgtgtgtgtttagtcccaattatttgagtatgcatttacatcc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAGGATGACGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAG cctcattggtactctcatctggtcagttatatttttattgcattctgcagAATGGAGATAAGGGGGCATCCCCTAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAAGATGATGCATGGATTTATGACATAAATCGGGCAGTGGATGAGGAAGgtaattctgtgtgtgtttagtcccaattatttgagtatgcatttacatcc #### Myof_ID7486_16 --> 1 - 1 Original Alignment gGACCGGCTTACTAAAAATGATGTAGTTGGGACCACGTACCTGTACCTCTCTAAAATTGCTGCCTCTGGGGGAGAAGTGGAAg gtagcattttgcgaaccctttgttgtagaaagatgttctttcctgtcaaggGACCGGCTTACTAAAAATGATGTAGTTGGGACCACGTACCTGTACCTCTCTAAAATTGCTGCCTCTGGGGGAGAAGTGGAAggtacgttagccaagaagggattgagcagaactcaactgctcccctccctc Alignment from CESAR gGACCGGCTTACTAAAAATGATGTAGTTGGGACCACGTACCTGTACCTCTCTAAAATTGCTGCCTCTGGGGGAGAAGTGGAAg gtagcattttgcgaaccctttgttgtagaaagatgttctttcctgtcaaggGACCGGCTTACTAAAAATGATGTAGTTGGGACCACGTACCTGTACCTCTCTAAAATTGCTGCCTCTGGGGGAGAAGTGGAAggtacgttagccaagaagggattgagcagaactcaactgctcccctccctc Alignment from Spaln_aa2Genome GGACCGGCTTACTAAAAATGATGTAGTTGGGACCACGTACCTGTACCTCTCTAAAATTGCTGCCTCTGGGGGAGAAGTGGAAG gtagcattttgcgaaccctttgttgtagaaagatgttctttcctgtcaagGGACCGGCTTACTAAAAATGATGTAGTTGGGACCACGTACCTGTACCTCTCTAAAATTGCTGCCTCTGGGGGAGAAGTGGAAGgtacgttagccaagaagggattgagcagaactcaactgctcccctccctc Alignment from Spaln_nt2Genome GGACCGGCTTACTAAAAATGATGTAGTTGGGACCACGTACCTGTACCTCTCTAAAATTGCTGCCTCTGGGGGAGAAGTGGAAG gtagcattttgcgaaccctttgttgtagaaagatgttctttcctgtcaagGGACCGGCTTACTAAAAATGATGTAGTTGGGACCACGTACCTGTACCTCTCTAAAATTGCTGCCTCTGGGGGAGAAGTGGAAGgtacgttagccaagaagggattgagcagaactcaactgctcccctccctc Alignment from Pairagon GGACCGGCTTACTAAAAATGATGTAGTTGGGACCACGTACCTGTACCTCTCTAAAATTGCTGCCTCTGGGGGAGAAGTGGAAG gtagcattttgcgaaccctttgttgtagaaagatgttctttcctgtcaagGGACCGGCTTACTAAAAATGATGTAGTTGGGACCACGTACCTGTACCTCTCTAAAATTGCTGCCTCTGGGGGAGAAGTGGAAGgtacgttagccaagaagggattgagcagaactcaactgctcccctccctc Alignment from Exonerate_protein2genome GGGACCGGCTTACTAAAAATGATGTAGTTGGGACCACGTACCTGTACCTCTCTAAAATTGCTGCCTCTGGGGGAGAAGTGGAAG gtagcattttgcgaaccctttgttgtagaaagatgttctttcctgtcaaGGGACCGGCTTACTAAAAATGATGTAGTTGGGACCACGTACCTGTACCTCTCTAAAATTGCTGCCTCTGGGGGAGAAGTGGAAGgtacgttagccaagaagggattgagcagaactcaactgctcccctccctc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCTCCATGTGTGAAAAAATA---------AAACTAACAGTATATGACTGGGACCGGCTTACTAAAAATGATGTAGTTGGGACCACGTACCTGTACCTCTCTAAAATTGCTGCCTCTGGGGGAGAAGTGGAAG gTAGCATTTTGCGAACCCTTTGTTGTAGAAAGATGTTCTTTCCTGTCAAGGGACCGGCTTACTAAAAATGATGTAGTTGGGACCACGTACCTGTACCTCTCTAAAATTGCTGCCTCTGGGGGAGAAGTGGAAGgtacgttagccaagaagggattgagcagaactcaactgctcccctccctc #### Myrf_ID2720_17 --> 0 - 2 Original Alignment TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCag atgggcatcttgactctatatagtgcgactatgccatccctgtgtttcagTCATCATCCGCAGTCCCAGACCAAGCCTGCATCAGTCAGCATTTTCTGCAGGGAACTATCATAGCTCTTGTAGTAGTGATGGCCTTCaggtgagtccctttaccaagttgagtcccttaaaacgccatacaattgtgta Alignment from CESAR TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCag atgggcatcttgactctatatagtgcgactatgccatccctgtgtttcagTCATCATCCGCAGTCCCAGACCAAGCCTGCATCAGTCAGCATTTTCTGCAGGGAACTATCATAGCTCTTGTAGTAGTGATGGCCTTCaggtgagtccctttaccaagttgagtcccttaaaacgccatacaattgtgta Alignment from Spaln_aa2Genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG atgggcatcttgactctatatagtgcgactatgccatccctgtgtttcagTCATCATCCGCAGTCCCAGACCAAGCCTGCATCAGTCAGCATTTTCTGCAGGGAACTATCATAGCTCTTGTAGTAGTGATGGCCTTCAGgtgagtccctttaccaagttgagtcccttaaaacgccatacaattgtgta Alignment from Spaln_nt2Genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG atgggcatcttgactctatatagtgcgactatgccatccctgtgtttcagTCATCATCCGCAGTCCCAGACCAAGCCTGCATCAGTCAGCATTTTCTGCAGGGAACTATCATAGCTCTTGTAGTAGTGATGGCCTTCAGgtgagtccctttaccaagttgagtcccttaaaacgccatacaattgtgta Alignment from Pairagon TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG atgggcatcttgactctatatagtgcgactatgccatccctgtgtttcagTCATCATCCGCAGTCCCAGACCAAGCCTGCATCAGTCAGCATTTTCTGCAGGGAACTATCATAGCTCTTGTAGTAGTGATGGCCTTCAGgtgagtccctttaccaagttgagtcccttaaaacgccatacaattgtgta Alignment from Exonerate_protein2genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG atgggcatcttgactctatatagtgcgactatgccatccctgtgtttcagTCATCATCCGCAGTCCCAGACCAAGCCTGCATCAGTCAGCATTTTCTGCAGGGAACTATCATAGCTCTTGTAGTAGTGATGGCCTTCAGgtgagtccctttaccaagttgagtcccttaaaacgccatacaattgtgta Alignment from Exonerate_coding2genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG atgggcatcttgactctatatagtgcgactatgccatccctgtgtttcagTCATCATCCGCAGTCCCAGACCAAGCCTGCATCAGTCAGCATTTTCTGCAGGGAACTATCATAGCTCTTGTAGTAGTGATGGCCTTCAGgtgagtccctttaccaagttgagtcccttaaaacgccatacaattgtgta Alignment from GeneWise TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG atgggcatcttgactctatatagtgcgactatgccatccctgtgtttcagTCATCATCCGCAGTCCCAGACCAAGCCTGCATCAGTCAGCATTTTCTGCAGGGAACTATCATAGCTCTTGTAGTAGTGATGGCCTTCAGgtgagtccctttaccaagttgagtcccttaaaacgccatacaattgtgta #### Myrf_ID2723_14 --> 2 - 0 Original Alignment gtGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcttggcaaggtagagtcctggttccaaacatgtctttatttgcttgcaggtGTCATTGCCCGGGAAGTGAAGGTGATTCTGCCTGAAGCCGTGGAGGACACAGGGGACGTTGTTTTTGCAAATGGAAAAAGCATAAAGAACTTCCTTGTAGTGAACAAAgtaccatataggatctgtctgatgcaacttgagcatgaaatctagctgtc Alignment from CESAR gtGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcttggcaaggtagagtcctggttccaaacatgtctttatttgcttgcaggtGTCATTGCCCGGGAAGTGAAGGTGATTCTGCCTGAAGCCGTGGAGGACACAGGGGACGTTGTTTTTGCAAATGGAAAAAGCATAAAGAACTTCCTTGTAGTGAACAAAgtaccatataggatctgtctgatgcaacttgagcatgaaatctagctgtc Alignment from Spaln_aa2Genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcttggcaaggtagagtcctggttccaaacatgtctttatttgcttgcagGTGTCATTGCCCGGGAAGTGAAGGTGATTCTGCCTGAAGCCGTGGAGGACACAGGGGACGTTGTTTTTGCAAATGGAAAAAGCATAAAGAACTTCCTTGTAGTGAACAAAgtaccatataggatctgtctgatgcaacttgagcatgaaatctagctgtc Alignment from Spaln_nt2Genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcttggcaaggtagagtcctggttccaaacatgtctttatttgcttgcagGTGTCATTGCCCGGGAAGTGAAGGTGATTCTGCCTGAAGCCGTGGAGGACACAGGGGACGTTGTTTTTGCAAATGGAAAAAGCATAAAGAACTTCCTTGTAGTGAACAAAgtaccatataggatctgtctgatgcaacttgagcatgaaatctagctgtc Alignment from Pairagon GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcttggcaaggtagagtcctggttccaaacatgtctttatttgcttgcagGTGTCATTGCCCGGGAAGTGAAGGTGATTCTGCCTGAAGCCGTGGAGGACACAGGGGACGTTGTTTTTGCAAATGGAAAAAGCATAAAGAACTTCCTTGTAGTGAACAAAgtaccatataggatctgtctgatgcaacttgagcatgaaatctagctgtc Alignment from Exonerate_protein2genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcttggcaaggtagagtcctggttccaaacatgtctttatttgcttgcagGTGTCATTGCCCGGGAAGTGAAGGTGATTCTGCCTGAAGCCGTGGAGGACACAGGGGACGTTGTTTTTGCAAATGGAAAAAGCATAAAGAACTTCCTTGTAGTGAACAAAgtaccatataggatctgtctgatgcaacttgagcatgaaatctagctgtc Alignment from Exonerate_coding2genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcttggcaaggtagagtcctggttccaaacatgtctttatttgcttgcagGTGTCATTGCCCGGGAAGTGAAGGTGATTCTGCCTGAAGCCGTGGAGGACACAGGGGACGTTGTTTTTGCAAATGGAAAAAGCATAAAGAACTTCCTTGTAGTGAACAAAgtaccatataggatctgtctgatgcaacttgagcatgaaatctagctgtc Alignment from GeneWise GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcttggcaaggtagagtcctggttccaaacatgtctttatttgcttgcagGTGTCATTGCCCGGGAAGTGAAGGTGATTCTGCCTGAAGCCGTGGAGGACACAGGGGACGTTGTTTTTGCAAATGGAAAAAGCATAAAGAACTTCCTTGTAGTGAACAAAgtaccatataggatctgtctgatgcaacttgagcatgaaatctagctgtc #### Naaladl1_ID1443_2 --> 1 - 1 Original Alignment aGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCg atctgctgctggattctattctcctccgtctcctttacctgctttggcagaGAGCTTGCAAAAGAACCACATGTTGCCACCAGCACTCGAGATGATGCCCTGGTTCAGCTGCTGTTGGGACGCTGGAAGGATACAGCACCAGGACTGGACTCAGCCAAGACCTATGAATATCGGGTGTTGCTTGCTTTCCCTAATGCA---GAGGCTAACAGTGTGGAAGTTggtaagagtctagaagtttccaggcaggatgctttttttcttttttttttc Alignment from CESAR aGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCg atctgctgctggattctattctcctccgtctcctttacctgctttggcagaGAGCTTGCAAAAGAACCACATGTTGCCACCAGCACTCGAGATGATGCCCTGGTTCAGCTGCTGTTGGGACGCTGGAAGGATACAGCACCAGGACTGGACTCAGCCAAGACCTATGAATATCGGGTGTTGCTTGCTTTCCCTAATGCAGAG---GCTAACAGTGTGGAAGTTggtaagagtctagaagtttccaggcaggatgcattttctccgtttgattta Alignment from Spaln_aa2Genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG atctgctgctggattctattctcctccgtctcctttacctgctttggcagAGAGCTTGCAAAAGAACCACATGTTGCCACCAGCACTCGAGATGATGCCCTGGTTCAGCTGCTGTTGGGACGCTGGAAGGATACAGCACCAGGACTGGACTCAGCCAAGACCTATGAATATCGGGTGTTGCTTGCTTTCCCTAATGCAGAG---GCTAACAGTGTGGAAGTTGgtaagagtctagaagtttccaggcaggatgctttttttcttttttttttc Alignment from Spaln_nt2Genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG atctgctgctggattctattctcctccgtctcctttacctgctttggcagAGAGCTTGCAAAAGAACCACATGTTGCCACCAGCACTCGAGATGATGCCCTGGTTCAGCTGCTGTTGGGACGCTGGAAGGATACAGCACCAGGACTGGACTCAGCCAAGACCTATGAATATCGGGTGTTGCTTGCTTTCCCTAATGCAG---AGGCTAACAGTGTGGAAGTTGgtaagagtctagaagtttccaggcaggatgctttttttcttttttttttc Alignment from Pairagon AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG atctgctgctggattctattctcctccgtctcctttacctgctttggcagAGAGCTTGCAAAAGAACCACATGTTGCCACCAGCACTCGAGATGATGCCCTGGTTCAGCTGCTGTTGGGACGCTGGAAGGATACAGCACCAGGACTGGACTCAGCCAAGACCTATGAATATCGGGTGTTGCTTGCTTTCCCTAATGCAG---AGGCTAACAGTGTGGAAGTTGgtaagagtctagaagtttccaggcaggatgctttttttcttttttttttc Alignment from Exonerate_protein2genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG atctgctgctggattctattctcctccgtctcctttacctgctttggcagAGAGCTTGCAAAAGAACCACATGTTGCCACCAGCACTCGAGATGATGCCCTGGTTCAGCTGCTGTTGGGACGCTGGAAGGATACAGCACCAGGACTGGACTCAGCCAAGACCTATGAATATCGGGTGTTGCTTGCTTTCCCTAATGCAGAG---GCTAACAGTGTGGAAGTTGgtaagagtctagaagtttccaggcaggatgctttttttcttttttttttc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG atctgctgctggattctattctcctccgtctcctttacctgctttggcagAGAGCTTGCAAAAGAACCACATGTTGCCACCAGCACTCGAGATGATGCCCTGGTTCAGCTGCTGTTGGGACGCTGGAAGGATACAGCACCAGGACTGGACTCAGCCAAGACCTATGAATATCGGGTGTTGCTTGCTTTCCCTAATGCAGAGGCT---AACAGTGTGGAAGTTGgtaagagtctagaagtttccaggcaggatgctttttttcttttttttttc #### Naaladl1_ID1456_15 --> 2 - 1 Original Alignment gtTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGg gg atgaaggtgaaacttggatgtcgcctctgcattgttgttcctcttgtcaggtTTTAGTAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGCGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTAGGTACCCAATTAGAAAAGCAGAATGTAAGCTTGggtaaggcacaacatcctgaggcagtgagttttcaattctcttttctaggg Alignment from CESAR gtTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGg gg atgaaggtgaaacttggatgtcgcctctgcattgttgttcctcttgtcaggtTTTAGTAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGCGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTAGGTACCCAATTAGAAAAGCAGAATGTAAGCTTGggtaaggcacaacatcctgaggcagtggctctgaccctctgtcccgcaggg Alignment from Spaln_aa2Genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG atgaaggtgaaacttggatgtcgcctctgcattgttgttcctcttgtcagGTTTTAGTAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGCGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTAGGTACCCAATTAGAAAAGCAGAATGTAAGCTTGGgtaaggcacaacatcctgaggcagtgagttttcaattctcttttctagGG Alignment from Spaln_nt2Genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG atgaaggtgaaacttggatgtcgcctctgcattgttgttcctcttgtcagGTTTTAGTAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGCGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTAGGTACCCAATTAGAAAAGCAGAATGTAAGCTTGGgtaaggcacaacatcctgaggcagtgagttttcaattctcttttctagGG Alignment from Pairagon GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG atgaaggtgaaacttggatgtcgcctctgcattgttgttcctcttgtcagGTTTTAGTAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGCGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTAGGTACCCAATTAGAAAAGCAGAATGTAAGCTTGGgtaaggcacaacatcctgaggcagtgagttttcaattctcttttctagGG Alignment from Exonerate_protein2genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG atgaaggtgaaacttggatgtcgcctctgcattgttgttcctcttgtcagGTTTTAGTAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGCGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTAGGTACCCAATTAGAAAAGCAGAATGTAAGCTTGGgtaaggcacaacatcctgaggcagtgagttttcaattctcttttctagGG Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGC------------------------------------------------CTGGGG atgaaggtgaaacttggatgtcgcctctgcattgttgttcctcttgtcagGTTTTAGTAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGCGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTAGGTACCCAATTAGAAAAGCAGAATGTAAGCTTGGGTAAGGCACAACATCCTGAGGCAGTGAGTTTTCAATTCTCTTTTCTAGGG #### Naaladl1_ID1457_16 --> 2 - 2 Original Alignment Gg ggCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTga GggtaaggcacaacatcctgaggcagtggctctgaccctctgtcccgcagggCCTTTGGTAACGGCAGTAGCAAACTTTAAGGCTTCAGCTGCCTCACTGGGAGAAGACATCCTGACCCTAGGCGAGAGCAGCCCTgagtatgtgccagcagaggacatgtctcaccaggtatacatgggggtggtac Alignment from CESAR Gg ggCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTga GggtaaggcacaacatcctgaggcagtggctctgaccctctgtcccgcagggCCTTTGGTAACGGCAGTAGCAAACTTTAAGGCTTCAGCTGCCTCACTGGGAGAAGACATCCTGACCCTAGGCGAGAGCAGCCCTgagtatgtgccagcagaggacatgtctcaccaggtatacatgggggtggtac Alignment from Spaln_aa2Genome GG GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA GGgtaaggcacaacatcctgaggcagtggctctgaccctctgtcccgcagGGCCTTTGGTAACGGCAGTAGCAAACTTTAAGGCTTCAGCTGCCTCACTGGGAGAAGACATCCTGACCCTAGGCGAGAGCAGCCCTGAgtatgtgccagcagaggacatgtctcaccaggtatacatgggggtggtac Alignment from Spaln_nt2Genome GG GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA GGgtaaggcacaacatcctgaggcagtggctctgaccctctgtcccgcagGGCCTTTGGTAACGGCAGTAGCAAACTTTAAGGCTTCAGCTGCCTCACTGGGAGAAGACATCCTGACCCTAGGCGAGAGCAGCCCTGAgtatgtgccagcagaggacatgtctcaccaggtatacatgggggtggtac Alignment from Pairagon GG GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA GGgtaaggcacaacatcctgaggcagtggctctgaccctctgtcccgcagGGCCTTTGGTAACGGCAGTAGCAAACTTTAAGGCTTCAGCTGCCTCACTGGGAGAAGACATCCTGACCCTAGGCGAGAGCAGCCCTGAgtatgtgccagcagaggacatgtctcaccaggtatacatgggggtggtac Alignment from Exonerate_protein2genome GG GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA GGgtaaggcacaacatcctgaggcagtggctctgaccctctgtcccgcagGGCCTTTGGTAACGGCAGTAGCAAACTTTAAGGCTTCAGCTGCCTCACTGGGAGAAGACATCCTGACCCTAGGCGAGAGCAGCCCTGAgtatgtgccagcagaggacatgtctcaccaggtatacatgggggtggtac Alignment from Exonerate_coding2genome GG GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA GGgtaaggcacaacatcctgaggcagtggctctgaccctctgtcccgcagGGCCTTTGGTAACGGCAGTAGCAAACTTTAAGGCTTCAGCTGCCTCACTGGGAGAAGACATCCTGACCCTAGGCGAGAGCAGCCCTGAgtatgtgccagcagaggacatgtctcaccaggtatacatgggggtggtac Alignment from GeneWise G------------------------------------------------GGGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA GGGTAAGGCACAACATCCTGAGGCAGTGGCTCTGACCCTCTGTCCCGCAGGGCCTTTGGTAACGGCAGTAGCAAACTTTAAGGCTTCAGCTGCCTCACTGGGAGAAGACATCCTGACCCTAGGCGAGAGCAGCCCTGAgtatgtgccagcagaggacatgtctcaccaggtatacatgggggtggtac #### Ndufv1_ID274_8 --> 0 - 1 Original Alignment ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGg gttttagggtgaatggccagaatgtccgggcaattcgcatgtgcttgcagGCAGACATTGTGAAAGCCATCGCTCATCTCATTGGGTTTTACAAGTATGAGAGCTGTGGTCAGTGTACCCCATGCCGAGAAggtacgttatctttaagtgtgttgtgttgttgtaaggttcacaggatgctc Alignment from CESAR ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGg gttttagggtgaatggccagaatgtccgggcaattcgcatgtgcttgcagGCAGACATTGTGAAAGCCATCGCTCATCTCATTGGGTTTTACAAGTATGAGAGCTGTGGTCAGTGTACCCCATGCCGAGAAggtacgttatctttaagtgtgttgtgttgttgtaaggttcacaggatgctc Alignment from Spaln_aa2Genome ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG gttttagggtgaatggccagaatgtccgggcaattcgcatgtgcttgcagGCAGACATTGTGAAAGCCATCGCTCATCTCATTGGGTTTTACAAGTATGAGAGCTGTGGTCAGTGTACCCCATGCCGAGAAGgtacgttatctttaagtgtgttgtgttgttgtaaggttcacaggatgctc Alignment from Spaln_nt2Genome ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG gttttagggtgaatggccagaatgtccgggcaattcgcatgtgcttgcagGCAGACATTGTGAAAGCCATCGCTCATCTCATTGGGTTTTACAAGTATGAGAGCTGTGGTCAGTGTACCCCATGCCGAGAAGgtacgttatctttaagtgtgttgtgttgttgtaaggttcacaggatgctc Alignment from Pairagon ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG gttttagggtgaatggccagaatgtccgggcaattcgcatgtgcttgcagGCAGACATTGTGAAAGCCATCGCTCATCTCATTGGGTTTTACAAGTATGAGAGCTGTGGTCAGTGTACCCCATGCCGAGAAGgtacgttatctttaagtgtgttgtgttgttgtaaggttcacaggatgctc Alignment from Exonerate_protein2genome ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG gttttagggtgaatggccagaatgtccgggcaattcgcatgtgcttgcagGCAGACATTGTGAAAGCCATCGCTCATCTCATTGGGTTTTACAAGTATGAGAGCTGTGGTCAGTGTACCCCATGCCGAGAAGgtacgttatctttaagtgtgttgtgttgttgtaaggttcacaggatgctc Alignment from Exonerate_coding2genome ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG gttttagggtgaatggccagaatgtccgggcaattcgcatgtgcttgcagGCAGACATTGTGAAAGCCATCGCTCATCTCATTGGGTTTTACAAGTATGAGAGCTGTGGTCAGTGTACCCCATGCCGAGAAGgtacgttatctttaagtgtgttgtgttgttgtaaggttcacaggatgctc Alignment from GeneWise ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG gttttagggtgaatggccagaatgtccgggcaattcgcatgtgcttgcagGCAGACATTGTGAAAGCCATCGCTCATCTCATTGGGTTTTACAAGTATGAGAGCTGTGGTCAGTGTACCCCATGCCGAGAAGgtacgttatctttaagtgtgttgtgttgttgtaaggttcacaggatgctc #### Ndufv1_ID275_7 --> 2 - 0 Original Alignment gtGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agaggggtgcttgcaaagaaccctgacatgcttttgatttccccctctaggtGGTGTCACAGGTGGCTGGGACAATCTGCTCGCTGTGACACCAGGTGGATCATCC---ACATTGATTCCCAAATCTGTTTGTGAGACAGTACTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGGCTGGGAACAGCTACAGTTATC---ATGGATCGTCTGgtaagcggtcataaacaccctcatactcgtcactatggggtgtgtttctc Alignment from CESAR gtGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agaggggtgcttgcaaagaaccctgacatgcttttgatttccccctctaggtGGTGTCACAGGTGGCTGGGACAATCTGCTCGCTGTGACACCAGGTGGATCATCCACA---TTGATTCCCAAATCTGTTTGTGAGACAGTACTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGGCTGGGAACAGCTACAGTTATC---ATGGATCGTCTGgtaagcggtcataaacaccctcatactcgtcactatggggtgtgtttctc Alignment from Spaln_aa2Genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agaggggtgcttgcaaagaaccctgacatgcttttgatttccccctctagGTGGTGTCACAGGTGGCTGGGACAATCTGCTCGCTGTGACACCAGGTGGATCATCCACA---TTGATTCCCAAATCTGTTTGTGAGACAGTACTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGGCTGGGAACAGCTACAGTTATC---ATGGATCGTCTGgtaagcggtcataaacaccctcatactcgtcactatggggtgtgtttctc Alignment from Spaln_nt2Genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agaggggtgcttgcaaagaaccctgacatgcttttgatttccccctctagGTGGTGTCACAGGTGGCTGGGACAATCTGCTCGCTGTGACACCAGGTGGATCATCCA---CATTGATTCCCAAATCTGTTTGTGAGACAGTACTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGGCTGGGAACAGCTACAGTTA---TCATGGATCGTCTGgtaagcggtcataaacaccctcatactcgtcactatggggtgtgtttctc Alignment from Pairagon GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agaggggtgcttgcaaagaaccctgacatgcttttgatttccccctctagGTGGTGTCACAGGTGGCTGGGACAATCTGCTCGCTGTGACACCAGGTGGATCATCCA---CATTGATTCCCAAATCTGTTTGTGAGACAGTACTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGGCTGGGAACAGCTACAGTTA---TCATGGATCGTCTGgtaagcggtcataaacaccctcatactcgtcactatggggtgtgtttctc Alignment from Exonerate_protein2genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agaggggtgcttgcaaagaaccctgacatgcttttgatttccccctctagGTGGTGTCACAGGTGGCTGGGACAATCTGCTCGCTGTGACACCAGGTGGATCATCCACA---TTGATTCCCAAATCTGTTTGTGAGACAGTACTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGGCTGGGAACAGCTACAGTTATC---ATGGATCGTCTGgtaagcggtcataaacaccctcatactcgtcactatggggtgtgtttctc Alignment from Exonerate_coding2genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agaggggtgcttgcaaagaaccctgacatgcttttgatttccccctctagGTGGTGTCACAGGTGGCTGGGACAATCTGCTCGCTGTGACACCAGGTGGATCATCCACA---TTGATTCCCAAATCTGTTTGTGAGACAGTACTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGGCTGGGAACAGCTACAGTTATC---ATGGATCGTCTGgtaagcggtcataaacaccctcatactcgtcactatggggtgtgtttctc Alignment from GeneWise GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agaggggtgcttgcaaagaaccctgacatgcttttgatttccccctctagGTGGTGTCACAGGTGGCTGGGACAATCTGCTCGCTGTGACACCAGGTGGATCATCCACA---TTGATTCCCAAATCTGTTTGTGAGACAGTACTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGGCTGGGAACAGCTACAGTTATC---ATGGATCGTCTGgtaagcggtcataaacaccctcatactcgtcactatggggtgtgtttctc #### Ndufv1_ID278_4 --> 1 - 0 Original Alignment gCCCAAGTATCTGGTGGTGAATGCTGACGAGGGAGAGCCAGGCACCTGTAAGGACCGAGAGATCATGCGTCATGACCCTCACAAGCTGGTGGAAGGCTGCCTTGTGGGAGGCCGGGCCATGGGAGCCCGGGCCGCCTATATCTACATCCGAGGGGAATTCTACAACGAGGCCTCCAATTTGCAG agctcaattgtcaggggttgtatgtctgaaaccttatgtattgtttctaggCCCAGGTACCTGGTGGTAAATGCTGACAAAGGAGAGCCTGGCACTTGTAAGGACCGAGAGATTATGCGGCATGCCTCTCACAAGCTGGTTGAAGGCTGCCTTGTGGGAGGCCATGCCATGGGGGCACGGGCTGCCTATGCGTACATACGAGGAGAGTTCTACAATGAGGCATCAAATTTGCAGgtaagtccattatctcttgctggtgttgcacagcttgcctcacctgctat Alignment from CESAR gCCCAAGTATCTGGTGGTGAATGCTGACGAGGGAGAGCCAGGCACCTGTAAGGACCGAGAGATCATGCGTCATGACCCTCACAAGCTGGTGGAAGGCTGCCTTGTGGGAGGCCGGGCCATGGGAGCCCGGGCCGCCTATATCTACATCCGAGGGGAATTCTACAACGAGGCCTCCAATTTGCAG agctcaattgtcaggggttgtatgtctgaaaccttatgtattgtttctaggCCCAGGTACCTGGTGGTAAATGCTGACAAAGGAGAGCCTGGCACTTGTAAGGACCGAGAGATTATGCGGCATGCCTCTCACAAGCTGGTTGAAGGCTGCCTTGTGGGAGGCCATGCCATGGGGGCACGGGCTGCCTATGCGTACATACGAGGAGAGTTCTACAATGAGGCATCAAATTTGCAGgtaagtccattatctcttgctggtgttgcacagcttgcctcacctgctat Alignment from Spaln_aa2Genome GCCCAAGTATCTGGTGGTGAATGCTGACGAGGGAGAGCCAGGCACCTGTAAGGACCGAGAGATCATGCGTCATGACCCTCACAAGCTGGTGGAAGGCTGCCTTGTGGGAGGCCGGGCCATGGGAGCCCGGGCCGCCTATATCTACATCCGAGGGGAATTCTACAACGAGGCCTCCAATTTGCAG agctcaattgtcaggggttgtatgtctgaaaccttatgtattgtttctagGCCCAGGTACCTGGTGGTAAATGCTGACAAAGGAGAGCCTGGCACTTGTAAGGACCGAGAGATTATGCGGCATGCCTCTCACAAGCTGGTTGAAGGCTGCCTTGTGGGAGGCCATGCCATGGGGGCACGGGCTGCCTATGCGTACATACGAGGAGAGTTCTACAATGAGGCATCAAATTTGCAGgtaagtccattatctcttgctggtgttgcacagcttgcctcacctgctat Alignment from Spaln_nt2Genome GCCCAAGTATCTGGTGGTGAATGCTGACGAGGGAGAGCCAGGCACCTGTAAGGACCGAGAGATCATGCGTCATGACCCTCACAAGCTGGTGGAAGGCTGCCTTGTGGGAGGCCGGGCCATGGGAGCCCGGGCCGCCTATATCTACATCCGAGGGGAATTCTACAACGAGGCCTCCAATTTGCAG agctcaattgtcaggggttgtatgtctgaaaccttatgtattgtttctagGCCCAGGTACCTGGTGGTAAATGCTGACAAAGGAGAGCCTGGCACTTGTAAGGACCGAGAGATTATGCGGCATGCCTCTCACAAGCTGGTTGAAGGCTGCCTTGTGGGAGGCCATGCCATGGGGGCACGGGCTGCCTATGCGTACATACGAGGAGAGTTCTACAATGAGGCATCAAATTTGCAGgtaagtccattatctcttgctggtgttgcacagcttgcctcacctgctat Alignment from Pairagon GCCCAAGTATCTGGTGGTGAATGCTGACGAGGGAGAGCCAGGCACCTGTAAGGACCGAGAGATCATGCGTCATGACCCTCACAAGCTGGTGGAAGGCTGCCTTGTGGGAGGCCGGGCCATGGGAGCCCGGGCCGCCTATATCTACATCCGAGGGGAATTCTACAACGAGGCCTCCAATTTGCAG agctcaattgtcaggggttgtatgtctgaaaccttatgtattgtttctagGCCCAGGTACCTGGTGGTAAATGCTGACAAAGGAGAGCCTGGCACTTGTAAGGACCGAGAGATTATGCGGCATGCCTCTCACAAGCTGGTTGAAGGCTGCCTTGTGGGAGGCCATGCCATGGGGGCACGGGCTGCCTATGCGTACATACGAGGAGAGTTCTACAATGAGGCATCAAATTTGCAGgtaagtccattatctcttgctggtgttgcacagcttgcctcacctgctat Alignment from Exonerate_protein2genome GCCCAAGTATCTGGTGGTGAATGCTGACGAGGGAGAGCCAGGCACCTGTAAGGACCGAGAGATCATGCGTCATGACCCTCACAAGCTGGTGGAAGGCTGCCTTGTGGGAGGCCGGGCCATGGGAGCCCGGGCCGCCTATATCTACATCCGAGGGGAATTCTACAACGAGGCCTCCAATTTGCAG agctcaattgtcaggggttgtatgtctgaaaccttatgtattgtttctagGCCCAGGTACCTGGTGGTAAATGCTGACAAAGGAGAGCCTGGCACTTGTAAGGACCGAGAGATTATGCGGCATGCCTCTCACAAGCTGGTTGAAGGCTGCCTTGTGGGAGGCCATGCCATGGGGGCACGGGCTGCCTATGCGTACATACGAGGAGAGTTCTACAATGAGGCATCAAATTTGCAGgtaagtccattatctcttgctggtgttgcacagcttgcctcacctgctat Alignment from Exonerate_coding2genome GCCCAAGTATCTGGTGGTGAATGCTGACGAGGGAGAGCCAGGCACCTGTAAGGACCGAGAGATCATGCGTCATGACCCTCACAAGCTGGTGGAAGGCTGCCTTGTGGGAGGCCGGGCCATGGGAGCCCGGGCCGCCTATATCTACATCCGAGGGGAATTCTACAACGAGGCCTCCAATTTGCAG agctcaattgtcaggggttgtatgtctgaaaccttatgtattgtttctagGCCCAGGTACCTGGTGGTAAATGCTGACAAAGGAGAGCCTGGCACTTGTAAGGACCGAGAGATTATGCGGCATGCCTCTCACAAGCTGGTTGAAGGCTGCCTTGTGGGAGGCCATGCCATGGGGGCACGGGCTGCCTATGCGTACATACGAGGAGAGTTCTACAATGAGGCATCAAATTTGCAGgtaagtccattatctcttgctggtgttgcacagcttgcctcacctgctat Alignment from GeneWise GCCCAAGTATCTGGTGGTGAATGCTGACGAGGGAGAGCCAGGCACCTGTAAGGACCGAGAGATCATGCGTCATGACCCTCACAAGCTGGTGGAAGGCTGCCTTGTGGGAGGCCGGGCCATGGGAGCCCGGGCCGCCTATATCTACATCCGAGGGGAATTCTACAACGAGGCCTCCAATTTGCAG agctcaattgtcaggggttgtatgtctgaaaccttatgtattgtttctagGCCCAGGTACCTGGTGGTAAATGCTGACAAAGGAGAGCCTGGCACTTGTAAGGACCGAGAGATTATGCGGCATGCCTCTCACAAGCTGGTTGAAGGCTGCCTTGTGGGAGGCCATGCCATGGGGGCACGGGCTGCCTATGCGTACATACGAGGAGAGTTCTACAATGAGGCATCAAATTTGCAGgtaagtccattatctcttgctggtgttgcacagcttgcctcacctgctat #### Neurl1a_ID10161_4 --> 2 - 1 Original Alignment acAGCGAGCTGGTGCTGCCCGACTGCCTGCGGCCGCGCTCC---TTCACCGCGCTGCGGCGGCCGTCGCTGCGGTGCGAGGCGGATGAGGCGCGCCTGTCGGTGAGCCTGTGCGACCTCAACGTGCCGGGAGCCGACGGCGACGACGGCGCACCGCCTGCCGGCTGCCCGATCCCGCAG------------AACTCGCTCAATTCTCAGCACAGCCGCGCGCTGCCGGCGCAGCTCGACGGCGACCTGCGCTTCCACGCGCTTCGCGCCGGCGCGCACGTCCGCATCCTGGACGAGCAGACGGTGGCGCGCCTGGAGCACGGGCGCGACGAGCGCGCGCTCGTCTTCACCAGCCGGCCTGTGCGCGTGGCCGAGACCATCTTCATCAAGGTCACGCGCTCGGGCGGGGGGCGAGCGGGCGCGCTGTCCTTCGGGGTCACCACGTGTGACCCTGGCACGCTGCGGCCCGCCGACCTGCCCTTCAGCCCCGAGGCCCTGGTGGACCGCAAGGAGTTCTGGGCGGTGTGTCGCGTGCCCGGGCCTCTGCACAGCGGCGACATCCTGGGCCTGGTGGTCAACGCGGACGGAGAGCTGCACCTGAGTCACAACGGCGCGGCGGCCGGCATGCAGCTGTGCGTGGATGCCTCGCAGCCCCTCTGGATGCTCTTCAGCCTGCATGGCGCCATCACGCAGGTCCGCATCCTCg gtgtctttaacatgggacaagatggccacaacgtgtgtttcacccctcagacAGTAAATTAGTGCTCCCTGGCTGTCTGCAGCCACATTCTTCATTTACCACCTTGTGGCAACCATCATTGCGATGTGAGGCAGACAATGCCCACCTTTTAGTGAGCCTTTGTAGTCTCAACGTGTCAGGGGCTGACAGCGATGATGGTACAGCCCCTGCAGGTTGCCCAATCCCGCATCCTATCCCACAGAACCTATCAAACTCACATTACACCCATGCACTCCCAGCACAGCTTGATGGTGACCCACACTTTCATGCTCTTTGCACAGGTGCGGATGTCCGCATTCTTGATGAGCAAACAGTGGCACACCTGAAACATGGGTGTGATGAGCGCATGCTTGTATTCACCAGCAGGCCTGTGCGTGTTGCTGAGACCATATTCATTAAGGTTGTTCACTCTGGTGGTGGGCAAGCTGGTTCACTATCCTTTGAGGTTACCACATGTGACCCTGGCACCCTGCGGCCTGCTGACCTTCCCTCTAGCCCTGAC---CTAGTAGACCGCAAGGAATTCTGGGCAGTGTGTCGTGTGCCTGGGCCACTACACAGTGGTGAGATTTTGGGCCTTGTGGTCAACATGGATGGTGAGCTCCACTTGAGTCATAATGGTGCAACGGCAGGTATGCAACTGTGTGTAGATGCCTCCCAACCCCTTTTGATGTTATTCAGGCTGCATGGAACCATTACACAGGTCCATGTCCTTggtaagcgttccaggtccaagctccagtcacaggaaataataatgtccgag Alignment from CESAR acAGCGAGCTGGTGCTGCCCGACTGCCTGCGGCCGCGCTCC---TTCACCGCGCTGCGGCGGCCGTCGCTGCGGTGCGAGGCGGATGAGGCGCGCCTGTCGGTGAGCCTGTGCGACCTCAACGTGCCGGGAGCCGACGGCGACGACGGCGCACCGCCTGCCGGCTGCCCGATCCCG------------CAGAACTCGCTCAATTCTCAGCACAGCCGCGCGCTGCCGGCGCAGCTCGACGGCGACCTGCGCTTCCACGCGCTTCGCGCCGGCGCGCACGTCCGCATCCTGGACGAGCAGACGGTGGCGCGCCTGGAGCACGGGCGCGACGAGCGCGCGCTCGTCTTCACCAGCCGGCCTGTGCGCGTGGCCGAGACCATCTTCATCAAGGTCACGCGCTCGGGCGGGGGGCGAGCGGGCGCGCTGTCCTTCGGGGTCACCACGTGTGACCCTGGCACGCTGCGGCCCGCCGACCTGCCCTTCAGCCCCGAGGCCCTGGTGGACCGCAAGGAGTTCTGGGCGGTGTGTCGCGTGCCCGGGCCTCTGCACAGCGGCGACATCCTGGGCCTGGTGGTCAACGCGGACGGAGAGCTGCACCTGAGTCACAACGGCGCGGCGGCCGGCATGCAGCTGTGCGTGGATGCCTCGCAGCCCCTCTGGATGCTCTTCAGCCTGCATGGCGCCATCACGCAGGTCCGCATCCTCg gtgtctttaacatgggacaagatggccacaacgtgtgtttcacccctcagacAGTAAATTAGTGCTCCCTGGCTGTCTGCAGCCACATTCTTCATTTACCACCTTGTGGCAACCATCATTGCGATGTGAGGCAGACAATGCCCACCTTTTAGTGAGCCTTTGTAGTCTCAACGTGTCAGGGGCTGACAGCGATGATGGTACAGCCCCTGCAGGTTGCCCAATCCCGCATCCTATCCCACAGAACCTATCAAACTCACATTACACCCATGCACTCCCAGCACAGCTTGATGGTGACCCACACTTTCATGCTCTTTGCACAGGTGCGGATGTCCGCATTCTTGATGAGCAAACAGTGGCACACCTGAAACATGGGTGTGATGAGCGCATGCTTGTATTCACCAGCAGGCCTGTGCGTGTTGCTGAGACCATATTCATTAAGGTTGTTCACTCTGGTGGTGGGCAAGCTGGTTCACTATCCTTTGAGGTTACCACATGTGACCCTGGCACCCTGCGGCCTGCTGACCTTCCCTCTAGCCCTGAC---CTAGTAGACCGCAAGGAATTCTGGGCAGTGTGTCGTGTGCCTGGGCCACTACACAGTGGTGAGATTTTGGGCCTTGTGGTCAACATGGATGGTGAGCTCCACTTGAGTCATAATGGTGCAACGGCAGGTATGCAACTGTGTGTAGATGCCTCCCAACCCCTTTTGATGTTATTCAGGCTGCATGGAACCATTACACAGGTCCATGTCCTTggtaagcgttccaggtccaagctccagtcacaggaaataataatgtccgag Alignment from Spaln_aa2Genome ACAGCGAGCTGGTGCTGCCCGACTGCCTGCGGCCGCGC---TCCTTCACCGCGCTGCGGCGGCCGTCGCTGCGGTGCGAGGCGGATGAGGCGCGCCTGTCGGTGAGCCTGTGCGACCTCAACGTGCCGGGAGCCGACGGCGACGACGGCGCACCGCCTGCCGGCTGC------------CCGATCCCGCAGAACTCGCTCAATTCTCAGCACAGCCGCGCGCTGCCGGCGCAGCTCGACGGCGACCTGCGCTTCCACGCGCTTCGCGCCGGCGCGCACGTCCGCATCCTGGACGAGCAGACGGTGGCGCGCCTGGAGCACGGGCGCGACGAGCGCGCGCTCGTCTTCACCAGCCGGCCTGTGCGCGTGGCCGAGACCATCTTCATCAAGGTCACGCGCTCGGGCGGGGGGCGAGCGGGCGCGCTGTCCTTCGGGGTCACCACGTGTGACCCTGGCACGCTGCGGCCCGCCGACCTGCCCTTCAGCCCCGAGGCCCTGGTGGACCGCAAGGAGTTCTGGGCGGTGTGTCGCGTGCCCGGGCCTCTGCACAGCGGCGACATCCTGGGCCTGGTGGTCAACGCGGACGGAGAGCTGCACCTGAGTCACAACGGCGCGGCGGCCGGCATGCAGCTGTGCGTGGATGCCTCGCAGCCCCTCTGGATGCTCTTCAGCCTGCATGGCGCCATCACGCAGGTCCGCATCCTCG gtgtctttaacatgggacaagatggccacaacgtgtgtttcacccctcagACAGTAAATTAGTGCTCCCTGGCTGTCTGCAGCCACATTCTTCATTTACCACCTTGTGGCAACCATCATTGCGATGTGAGGCAGACAATGCCCACCTTTTAGTGAGCCTTTGTAGTCTCAACGTGTCAGGGGCTGACAGCGATGATGGTACAGCCCCTGCAGGTTGCCCAATCCCGCATCCTATCCCACAGAACCTATCAAACTCACATTACACCCATGCACTCCCAGCACAGCTTGATGGTGACCCACACTTTCATGCTCTTTGCACAGGTGCGGATGTCCGCATTCTTGATGAGCAAACAGTGGCACACCTGAAACATGGGTGTGATGAGCGCATGCTTGTATTCACCAGCAGGCCTGTGCGTGTTGCTGAGACCATATTCATTAAGGTTGTTCACTCTGGTGGTGGGCAAGCTGGTTCACTATCCTTTGAGGTTACCACATGTGACCCTGGCACCCTGCGGCCTGCTGACCTTCCCTCTAGCCCTGAC---CTAGTAGACCGCAAGGAATTCTGGGCAGTGTGTCGTGTGCCTGGGCCACTACACAGTGGTGAGATTTTGGGCCTTGTGGTCAACATGGATGGTGAGCTCCACTTGAGTCATAATGGTGCAACGGCAGGTATGCAACTGTGTGTAGATGCCTCCCAACCCCTTTTGATGTTATTCAGGCTGCATGGAACCATTACACAGGTCCATGTCCTTGgtaagcgttccaggtccaagctccagtcacaggaaataataatgtccgag Alignment from Spaln_nt2Genome ACAGCGAGCTGGTGCTGCCCGACTGCCTGCGGCCGCGCTCCT---TCACCGCGCTGCGGCGGCCGTCGCTGCGGTGCGAGGCGGATGAGGCGCGCCTGTCGGTGAGCCTGTGCGACCTCAACGTGCCGGGAGCCGACGGCGACGACGGCGCACCGCCTGCCGGCTGCCCGATCCCGCA------------GAACTCGCTCAATTCTCAGCACAGCCGCGCGCTGCCGGCGCAGCTCGACGGCGACCTGCGCTTCCACGCGCTTCGCGCCGGCGCGCACGTCCGCATCCTGGACGAGCAGACGGTGGCGCGCCTGGAGCACGGGCGCGACGAGCGCGCGCTCGTCTTCACCAGCCGGCCTGTGCGCGTGGCCGAGACCATCTTCATCAAGGTCACGCGCTCGGGCGGGGGGCGAGCGGGCGCGCTGTCCTTCGGGGTCACCACGTGTGACCCTGGCACGCTGCGGCCCGCCGACCTGCCCTTCAGCCCCGAGGCCCTGGTGGACCGCAAGGAGTTCTGGGCGGTGTGTCGCGTGCCCGGGCCTCTGCACAGCGGCGACATCCTGGGCCTGGTGGTCAACGCGGACGGAGAGCTGCACCTGAGTCACAACGGCGCGGCGGCCGGCATGCAGCTGTGCGTGGATGCCTCGCAGCCCCTCTGGATGCTCTTCAGCCTGCATGGCGCCATCACGCAGGTCCGCATCCTCG gtgtctttaacatgggacaagatggccacaacgtgtgtttcacccctcagACAGTAAATTAGTGCTCCCTGGCTGTCTGCAGCCACATTCTTCATTTACCACCTTGTGGCAACCATCATTGCGATGTGAGGCAGACAATGCCCACCTTTTAGTGAGCCTTTGTAGTCTCAACGTGTCAGGGGCTGACAGCGATGATGGTACAGCCCCTGCAGGTTGCCCAATCCCGCATCCTATCCCACAGAACCTATCAAACTCACATTACACCCATGCACTCCCAGCACAGCTTGATGGTGACCCACACTTTCATGCTCTTTGCACAGGTGCGGATGTCCGCATTCTTGATGAGCAAACAGTGGCACACCTGAAACATGGGTGTGATGAGCGCATGCTTGTATTCACCAGCAGGCCTGTGCGTGTTGCTGAGACCATATTCATTAAGGTTGTTCACTCTGGTGGTGGGCAAGCTGGTTCACTATCCTTTGAGGTTACCACATGTGACCCTGGCACCCTGCGGCCTGCTGACCTTCCCTCTAGCCCTGA---CCTAGTAGACCGCAAGGAATTCTGGGCAGTGTGTCGTGTGCCTGGGCCACTACACAGTGGTGAGATTTTGGGCCTTGTGGTCAACATGGATGGTGAGCTCCACTTGAGTCATAATGGTGCAACGGCAGGTATGCAACTGTGTGTAGATGCCTCCCAACCCCTTTTGATGTTATTCAGGCTGCATGGAACCATTACACAGGTCCATGTCCTTGgtaagcgttccaggtccaagctccagtcacaggaaataataatgtccgag Alignment from Pairagon ACAGCGAGCTGGTGCTGCCCGACTGCCTGCGGCCGCGCTCC---TTCACCGCGCTGCGGCGGCCGTCGCTGCGGTGCGAGGCGGATGAGGCGCGCCTGTCGGTGAGCCTGTGCGACCTCAACGTGCCGGGAGCCGACGGCGACGACGGCGCACCGCCTGCCGGCTGCCCGATCCCGCA----------------------------------------GAACTCGCTCAATTCTCAGCACAGCCGCGCGCTGCCGGCGCAGCTCGACGGCGACCTGCGCTTCCACGCGCTTCGCGCCGGCGCGCACGTCCGCATCCTGGACGAGCAGACGGTGGCGCGCCTGGAGCACGGGCGCGACGAGCGCGCGCTCGTCTTCACCAGCCGGCCTGTGCGCGTGGCCGAGACCATCTTCATCAAGGTCACGCGCTCGGGCGGGGGGCGAGCGGGCGCGCTGTCCTTCGGGGTCACCACGTGTGACCCTGGCACGCTGCGGCCCGCCGACCTGCCCTTCAGCCCCGAGGCCCTGGTGGACCGCAAGGAGTTCTGGGCGGTGTGTCGCGTGCCCGGGCCTCTGCACAGCGGCGACATCCTGGGCCTGGTGGTCAACGCGGACGGAGAGCTGCACCTGAGTCACAACGGCGCGGCGGCCGGCATGCAGCTGTGCGTGGATGCCTCGCAGCCCCTCTGGATGCTCTTCAGCCTGCATGGCGCCATCACGCAGGTCCGCATCCTCG gtgtctttaacatgggacaagatggccacaacgtgtgtttcacccctcagACAGTAAATTAGTGCTCCCTGGCTGTCTGCAGCCACATTCTTCATTTACCACCTTGTGGCAACCATCATTGCGATGTGAGGCAGACAATGCCCACCTTTTAGTGAGCCTTTGTAGTCTCAACGTGTCAGGGGCTGACAGCGATGATGGTACAGCCCCTGCAGGTTGCCCAATCCCGCATCCTATCCCACAGAACCTATCAAACTCACATTACACCCATGCACTC----------------------------CCAGCACAGCTTGATGGTGACCCACACTTTCATGCTCTTTGCACAGGTGCGGATGTCCGCATTCTTGATGAGCAAACAGTGGCACACCTGAAACATGGGTGTGATGAGCGCATGCTTGTATTCACCAGCAGGCCTGTGCGTGTTGCTGAGACCATATTCATTAAGGTTGTTCACTCTGGTGGTGGGCAAGCTGGTTCACTATCCTTTGAGGTTACCACATGTGACCCTGGCACCCTGCGGCCTGCTGACCTTCCCTCTAGCCCTGA---CCTAGTAGACCGCAAGGAATTCTGGGCAGTGTGTCGTGTGCCTGGGCCACTACACAGTGGTGAGATTTTGGGCCTTGTGGTCAACATGGATGGTGAGCTCCACTTGAGTCATAATGGTGCAACGGCAGGTATGCAACTGTGTGTAGATGCCTCCCAACCCCTTTTGATGTTATTCAGGCTGCATGGAACCATTACACAGGTCCATGTCCTTGgtaagcgttccaggtccaagctccagtcacaggaaataataatgtccgag Alignment from Exonerate_protein2genome ACAGCGAGCTGGTGCTGCCCGACTGCCTGCGGCCGCGC---TCCTTCACCGCGCTGCGGCGGCCGTCGCTGCGGTGCGAGGCGGATGAGGCGCGCCTGTCGGTGAGCCTGTGCGACCTCAACGTGCCGGGAGCCGACGGCGACGACGGCGCACCGCCTGCCGGCTGC------------CCGATCCCGCAGAACTCGCTCAATTCTCAGCACAGCCGCGCGCTGCCGGCGCAGCTCGACGGCGACCTGCGCTTCCACGCGCTTCGCGCCGGCGCGCACGTCCGCATCCTGGACGAGCAGACGGTGGCGCGCCTGGAGCACGGGCGCGACGAGCGCGCGCTCGTCTTCACCAGCCGGCCTGTGCGCGTGGCCGAGACCATCTTCATCAAGGTCACGCGCTCGGGCGGGGGGCGAGCGGGCGCGCTGTCCTTCGGGGTCACCACGTGTGACCCTGGCACGCTGCGGCCCGCCGACCTGCCCTTCAGCCCCGAGGCCCTGGTGGACCGCAAGGAGTTCTGGGCGGTGTGTCGCGTGCCCGGGCCTCTGCACAGCGGCGACATCCTGGGCCTGGTGGTCAACGCGGACGGAGAGCTGCACCTGAGTCACAACGGCGCGGCGGCCGGCATGCAGCTGTGCGTGGATGCCTCGCAGCCCCTCTGGATGCTCTTCAGCCTGCATGGCGCCATCACGCAGGTCCGCATCCTCG gtgtctttaacatgggacaagatggccacaacgtgtgtttcacccctcagACAGTAAATTAGTGCTCCCTGGCTGTCTGCAGCCACATTCTTCATTTACCACCTTGTGGCAACCATCATTGCGATGTGAGGCAGACAATGCCCACCTTTTAGTGAGCCTTTGTAGTCTCAACGTGTCAGGGGCTGACAGCGATGATGGTACAGCCCCTGCAGGTTGCCCAATCCCGCATCCTATCCCACAGAACCTATCAAACTCACATTACACCCATGCACTCCCAGCACAGCTTGATGGTGACCCACACTTTCATGCTCTTTGCACAGGTGCGGATGTCCGCATTCTTGATGAGCAAACAGTGGCACACCTGAAACATGGGTGTGATGAGCGCATGCTTGTATTCACCAGCAGGCCTGTGCGTGTTGCTGAGACCATATTCATTAAGGTTGTTCACTCTGGTGGTGGGCAAGCTGGTTCACTATCCTTTGAGGTTACCACATGTGACCCTGGCACCCTGCGGCCTGCTGACCTTCCCTCTAGCCCTGAC---CTAGTAGACCGCAAGGAATTCTGGGCAGTGTGTCGTGTGCCTGGGCCACTACACAGTGGTGAGATTTTGGGCCTTGTGGTCAACATGGATGGTGAGCTCCACTTGAGTCATAATGGTGCAACGGCAGGTATGCAACTGTGTGTAGATGCCTCCCAACCCCTTTTGATGTTATTCAGGCTGCATGGAACCATTACACAGGTCCATGTCCTTGgtaagcgttccaggtccaagctccagtcacaggaaataataatgtccgag Alignment from Exonerate_coding2genome ACAGCGAGCTGGTGCTGCCCGACTGCCTGCGGCCGCGC---TCCTTCACCGCGCTGCGGCGGCCGTCGCTGCGGTGCGAGGCGGATGAGGCGCGCCTGTCGGTGAGCCTGTGCGACCTCAACGTGCCGGGAGCCGACGGCGACGACGGCGCACCGCCTGCCGGCTGC------------CCGATCCCGCAGAACTCGCTCAATTCTCAGCACAGCCGCGCGCTGCCGGCGCAGCTCGACGGCGACCTGCGCTTCCACGCGCTTCGCGCCGGCGCGCACGTCCGCATCCTGGACGAGCAGACGGTGGCGCGCCTGGAGCACGGGCGCGACGAGCGCGCGCTCGTCTTCACCAGCCGGCCTGTGCGCGTGGCCGAGACCATCTTCATCAAGGTCACGCGCTCGGGCGGGGGGCGAGCGGGCGCGCTGTCCTTCGGGGTCACCACGTGTGACCCTGGCACGCTGCGGCCCGCCGACCTGCCCTTCAGCCCCGAGGCCCTGGTGGACCGCAAGGAGTTCTGGGCGGTGTGTCGCGTGCCCGGGCCTCTGCACAGCGGCGACATCCTGGGCCTGGTGGTCAACGCGGACGGAGAGCTGCACCTGAGTCACAACGGCGCGGCGGCCGGCATGCAGCTGTGCGTGGATGCCTCGCAGCCCCTCTGGATGCTCTTCAGCCTGCATGGCGCCATCACGCAGGTCCGCATCCTCG gtgtctttaacatgggacaagatggccacaacgtgtgtttcacccctcagACAGTAAATTAGTGCTCCCTGGCTGTCTGCAGCCACATTCTTCATTTACCACCTTGTGGCAACCATCATTGCGATGTGAGGCAGACAATGCCCACCTTTTAGTGAGCCTTTGTAGTCTCAACGTGTCAGGGGCTGACAGCGATGATGGTACAGCCCCTGCAGGTTGCCCAATCCCGCATCCTATCCCACAGAACCTATCAAACTCACATTACACCCATGCACTCCCAGCACAGCTTGATGGTGACCCACACTTTCATGCTCTTTGCACAGGTGCGGATGTCCGCATTCTTGATGAGCAAACAGTGGCACACCTGAAACATGGGTGTGATGAGCGCATGCTTGTATTCACCAGCAGGCCTGTGCGTGTTGCTGAGACCATATTCATTAAGGTTGTTCACTCTGGTGGTGGGCAAGCTGGTTCACTATCCTTTGAGGTTACCACATGTGACCCTGGCACCCTGCGGCCTGCTGACCTTCCCTCTAGCCCTGAC---CTAGTAGACCGCAAGGAATTCTGGGCAGTGTGTCGTGTGCCTGGGCCACTACACAGTGGTGAGATTTTGGGCCTTGTGGTCAACATGGATGGTGAGCTCCACTTGAGTCATAATGGTGCAACGGCAGGTATGCAACTGTGTGTAGATGCCTCCCAACCCCTTTTGATGTTATTCAGGCTGCATGGAACCATTACACAGGTCCATGTCCTTGgtaagcgttccaggtccaagctccagtcacaggaaataataatgtccgag Alignment from GeneWise ACAGCGAGCTGGTGCTGCCCGACTGCCTGCGGCCGCGCTCC---TTCACCGCGCTGCGGCGGCCGTCGCTGCGGTGCGAGGCGGATGAGGCGCGCCTGTCGGTGAGCCTGTGCGACCTCAACGTGCCGGGAGCCGACGGCGACGACGGCGCACCGCCTGCCGGCTGC------------CCGATCCCGCAGAACTCGCTCAATTCTCAGCACAGCCGCGCGCTGCCGGCGCAGCTCGACGGCGACCTGCGCTTCCACGCGCTTCGCGCCGGCGCGCACGTCCGCATCCTGGACGAGCAGACGGTGGCGCGCCTGGAGCACGGGCGCGACGAGCGCGCGCTCGTCTTCACCAGCCGGCCTGTGCGCGTGGCCGAGACCATCTTCATCAAGGTCACGCGCTCGGGCGGGGGGCGAGCGGGCGCGCTGTCCTTCGGGGTCACCACGTGTGACCCTGGCACGCTGCGGCCCGCCGACCTGCCCTTCAGCCCCGAGGCCCTGGTGGACCGCAAGGAGTTCTGGGCGGTGTGTCGCGTGCCCGGGCCTCTGCACAGCGGCGACATCCTGGGCCTGGTGGTCAACGCGGACGGAGAGCTGCACCTGAGTCACAACGGCGCGGCGGCCGGCATGCAGCTGTGCGTGGATGCCTCGCAGCCCCTCTGGATGCTCTTCAGCCTGCATGGCGCCATCACGCAGGTCCGCATCCTCG gtgtctttaacatgggacaagatggccacaacgtgtgtttcacccctcagACAGTAAATTAGTGCTCCCTGGCTGTCTGCAGCCACATTCTTCATTTACCACCTTGTGGCAACCATCATTGCGATGTGAGGCAGACAATGCCCACCTTTTAGTGAGCCTTTGTAGTCTCAACGTGTCAGGGGCTGACAGCGATGATGGTACAGCCCCTGCAGGTTGCCCAATCCCGCATCCTATCCCACAGAACCTATCAAACTCACATTACACCCATGCACTCCCAGCACAGCTTGATGGTGACCCACACTTTCATGCTCTTTGCACAGGTGCGGATGTCCGCATTCTTGATGAGCAAACAGTGGCACACCTGAAACATGGGTGTGATGAGCGCATGCTTGTATTCACCAGCAGGCCTGTGCGTGTTGCTGAGACCATATTCATTAAGGTTGTTCACTCTGGTGGTGGGCAAGCTGGTTCACTATCCTTTGAGGTTACCACATGTGACCCTGGCACCCTGCGGCCTGCTGACCTTCCCTCTAGCCCTGAC---CTAGTAGACCGCAAGGAATTCTGGGCAGTGTGTCGTGTGCCTGGGCCACTACACAGTGGTGAGATTTTGGGCCTTGTGGTCAACATGGATGGTGAGCTCCACTTGAGTCATAATGGTGCAACGGCAGGTATGCAACTGTGTGTAGATGCCTCCCAACCCCTTTTGATGTTATTCAGGCTGCATGGAACCATTACACAGGTCCATGTCCTTGgtaagcgttccaggtccaagctccagtcacaggaaataataatgtccgag #### Neurl1a_ID10162_5 --> 2 - 1 Original Alignment gcTCCACCATCATGACTGAACGGGGTGGCCCATCTCTCCCCTGCTCACCTGCCTCCACTCCAACCTCACCCAGTGCCCTGGGCATCCGCCTCTCTGACCCCCTGCTCAGCACCTGCGGTTCTGGGCCCCTAGGTGGCTCTGCTGGAg cacaaacatggttttgatcctatgacaacttgtacctttttctttttcaggtTCTACAATAATCACTAAACGAGGGGGGCCATCTCTACCCTGCTCACCTGCTTCCACACCAACCTCACCCAGTGCCCTTGCCATACGCCTTTCTGGGCCCTTACTCAGCACTTGTAGTTCTGGGCCTCTAGGTGGCTCGAGAGGAggtgagaacactaggcctctattttcatgaataagtggaacaagcttggta Alignment from CESAR gcTCCACCATCATGACTGAACGGGGTGGCCCATCTCTCCCCTGCTCACCTGCCTCCACTCCAACCTCACCCAGTGCCCTGGGCATCCGCCTCTCTGACCCCCTGCTCAGCACCTGCGGTTCTGGGCCCCTAGGTGGCTCTGCTGGAg cacaaacatggttttgatcctatgacaacttgtacctttttctttttcaggtTCTACAATAATCACTAAACGAGGGGGGCCATCTCTACCCTGCTCACCTGCTTCCACACCAACCTCACCCAGTGCCCTTGCCATACGCCTTTCTGGGCCCTTACTCAGCACTTGTAGTTCTGGGCCTCTAGGTGGCTCGAGAGGAggtgagaacactaggcctctattttcatgaataagtggaacaagcttggta Alignment from Spaln_aa2Genome GCTCCACCATCATGACTGAACGGGGTGGCCCATCTCTCCCCTGCTCACCTGCCTCCACTCCAACCTCACCCAGTGCCCTGGGCATCCGCCTCTCTGACCCCCTGCTCAGCACCTGCGGTTCTGGGCCCCTAGGTGGCTCTGCTGGAG cacaaacatggttttgatcctatgacaacttgtacctttttctttttcagGTTCTACAATAATCACTAAACGAGGGGGGCCATCTCTACCCTGCTCACCTGCTTCCACACCAACCTCACCCAGTGCCCTTGCCATACGCCTTTCTGGGCCCTTACTCAGCACTTGTAGTTCTGGGCCTCTAGGTGGCTCGAGAGGAGgtgagaacactaggcctctattttcatgaataagtggaacaagcttggta Alignment from Spaln_nt2Genome GCTCCACCATCATGACTGAACGGGGTGGCCCATCTCTCCCCTGCTCACCTGCCTCCACTCCAACCTCACCCAGTGCCCTGGGCATCCGCCTCTCTGACCCCCTGCTCAGCACCTGCGGTTCTGGGCCCCTAGGTGGCTCTGCTGGAG cacaaacatggttttgatcctatgacaacttgtacctttttctttttcagGTTCTACAATAATCACTAAACGAGGGGGGCCATCTCTACCCTGCTCACCTGCTTCCACACCAACCTCACCCAGTGCCCTTGCCATACGCCTTTCTGGGCCCTTACTCAGCACTTGTAGTTCTGGGCCTCTAGGTGGCTCGAGAGGAGgtgagaacactaggcctctattttcatgaataagtggaacaagcttggta Alignment from Pairagon GCTCCACCATCATGACTGAACGGGGTGGCCCATCTCTCCCCTGCTCACCTGCCTCCACTCCAACCTCACCCAGTGCCCTGGGCATCCGCCTCTCTGACCCCCTGCTCAGCACCTGCGGTTCTGGGCCCCTAGGTGGCTCTGCTGGAG cacaaacatggttttgatcctatgacaacttgtacctttttctttttcagGTTCTACAATAATCACTAAACGAGGGGGGCCATCTCTACCCTGCTCACCTGCTTCCACACCAACCTCACCCAGTGCCCTTGCCATACGCCTTTCTGGGCCCTTACTCAGCACTTGTAGTTCTGGGCCTCTAGGTGGCTCGAGAGGAGgtgagaacactaggcctctattttcatgaataagtggaacaagcttggta Alignment from Exonerate_protein2genome GCTCCACCATCATGACTGAACGGGGTGGCCCATCTCTCCCCTGCTCACCTGCCTCCACTCCAACCTCACCCAGTGCCCTGGGCATCCGCCTCTCTGACCCCCTGCTCAGCACCTGCGGTTCTGGGCCCCTAGGTGGCTCTGCTGGAG cacaaacatggttttgatcctatgacaacttgtacctttttctttttcagGTTCTACAATAATCACTAAACGAGGGGGGCCATCTCTACCCTGCTCACCTGCTTCCACACCAACCTCACCCAGTGCCCTTGCCATACGCCTTTCTGGGCCCTTACTCAGCACTTGTAGTTCTGGGCCTCTAGGTGGCTCGAGAGGAGgtgagaacactaggcctctattttcatgaataagtggaacaagcttggta Alignment from Exonerate_coding2genome GCTCCACCATCATGACTGAACGGGGTGGCCCATCTCTCCCCTGCTCACCTGCCTCCACTCCAACCTCACCCAGTGCCCTGGGCATCCGCCTCTCTGACCCCCTGCTCAGCACCTGCGGTTCTGGGCCCCTAGGTGGCTCTGCTGGAG cacaaacatggttttgatcctatgacaacttgtacctttttctttttcagGTTCTACAATAATCACTAAACGAGGGGGGCCATCTCTACCCTGCTCACCTGCTTCCACACCAACCTCACCCAGTGCCCTTGCCATACGCCTTTCTGGGCCCTTACTCAGCACTTGTAGTTCTGGGCCTCTAGGTGGCTCGAGAGGAGgtgagaacactaggcctctattttcatgaataagtggaacaagcttggta Alignment from GeneWise GCTCCACCATCATGACTGAACGGGGTGGCCCATCTCTCCCCTGCTCACCTGCCTCCACTCCAACCTCACCCAGTGCCCTGGGCATCCGCCTCTCTGACCCCCTGCTCAGCACCTGCGGTTCTGGGCCCCTAGGTGGCTCTGCTGGAG cacaaacatggttttgatcctatgacaacttgtacctttttctttttcagGTTCTACAATAATCACTAAACGAGGGGGGCCATCTCTACCCTGCTCACCTGCTTCCACACCAACCTCACCCAGTGCCCTTGCCATACGCCTTTCTGGGCCCTTACTCAGCACTTGTAGTTCTGGGCCTCTAGGTGGCTCGAGAGGAGgtgagaacactaggcctctattttcatgaataagtggaacaagcttggta #### Nfkb2_ID9826_4 --> 0 - 0 Original Alignment CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctcctcctcattactgatatttcatttttttctttcagCGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCTCCCATGGTGGCTTGCCAGGTGCGTCCAGTGAGAAGGGCCGGAAGACCTATCCTACCGTAAAAgtacttgcagatgccacagctgaccttgctctgtagtgcgcatgaaattt Alignment from CESAR CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctcctcctcattactgatatttcatttttttctttcagCGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCTCCCATGGTGGCTTGCCAGGTGCGTCCAGTGAGAAGGGCCGGAAGACCTATCCTACCGTAAAAgtacttgcagatgccacagctgaccttgctctgtagtgcgcatgaaactc Alignment from Spaln_aa2Genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctcctcctcattactgatatttcatttttttctttcagCGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCTCCCATGGTGGCTTGCCAGGTGCGTCCAGTGAGAAGGGCCGGAAGACCTATCCTACCGTAAAAgtacttgcagatgccacagctgaccttgctctgtagtgcgcatgaaattt Alignment from Spaln_nt2Genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctcctcctcattactgatatttcatttttttctttcagCGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCTCCCATGGTGGCTTGCCAGGTGCGTCCAGTGAGAAGGGCCGGAAGACCTATCCTACCGTAAAAgtacttgcagatgccacagctgaccttgctctgtagtgcgcatgaaattt Alignment from Pairagon CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctcctcctcattactgatatttcatttttttctttcagCGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCTCCCATGGTGGCTTGCCAGGTGCGTCCAGTGAGAAGGGCCGGAAGACCTATCCTACCGTAAAAgtacttgcagatgccacagctgaccttgctctgtagtgcgcatgaaattt Alignment from Exonerate_protein2genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctcctcctcattactgatatttcatttttttctttcagCGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCTCCCATGGTGGCTTGCCAGGTGCGTCCAGTGAGAAGGGCCGGAAGACCTATCCTACCGTAAAAgtacttgcagatgccacagctgaccttgctctgtagtgcgcatgaaattt Alignment from Exonerate_coding2genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctcctcctcattactgatatttcatttttttctttcagCGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCTCCCATGGTGGCTTGCCAGGTGCGTCCAGTGAGAAGGGCCGGAAGACCTATCCTACCGTAAAAgtacttgcagatgccacagctgaccttgctctgtagtgcgcatgaaattt Alignment from GeneWise CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctcctcctcattactgatatttcatttttttctttcagCGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCTCCCATGGTGGCTTGCCAGGTGCGTCCAGTGAGAAGGGCCGGAAGACCTATCCTACCGTAAAAgtacttgcagatgccacagctgaccttgctctgtagtgcgcatgaaattt #### Nfkb2_ID9832_10 --> 0 - 1 Original Alignment TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTAC---CCTCTGGTGGAAg catacttgctagtgctaaatacaaaagttattttgttttgtttttgctagTATGCCATTGCGTTCCAGACCCCACCCTATCACAAGATGAAGGTTGAAAGACCCGTGACTGTGTTCCTTCAGCTGAAACGTAAACGTGGGGGTGATGTTTCAGACTCCAGACAATACACATATTATTACTCTTTGGTAGAGggtaagtcatcagggttcagtatttcccaaagccagcagaactcatgcctg Alignment from CESAR TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACA---TATTACCCTCTGGTGGAAg catacttgctagtgctaaatacaaaagttattttgttttgtttttgctagTATGCCATTGCGTTCCAGACCCCACCCTATCACAAGATGAAGGTTGAAAGACCCGTGACTGTGTTCCTTCAGCTGAAACGTAAACGTGGGGGTGATGTTTCAGACTCCAGACAATACACATATTATTACTCTTTGGTAGAGggtaagtcatcagggttcagtatttcccaaagccagcagaactcatgcctg Alignment from Spaln_aa2Genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACA---TATTACCCTCTGGTGGAAG catacttgctagtgctaaatacaaaagttattttgttttgtttttgctagTATGCCATTGCGTTCCAGACCCCACCCTATCACAAGATGAAGGTTGAAAGACCCGTGACTGTGTTCCTTCAGCTGAAACGTAAACGTGGGGGTGATGTTTCAGACTCCAGACAATACACATATTATTACTCTTTGGTAGAGGgtaagtcatcagggttcagtatttcccaaagccagcagaactcatgcctg Alignment from Spaln_nt2Genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTA---CCCTCTGGTGGAAG catacttgctagtgctaaatacaaaagttattttgttttgtttttgctagTATGCCATTGCGTTCCAGACCCCACCCTATCACAAGATGAAGGTTGAAAGACCCGTGACTGTGTTCCTTCAGCTGAAACGTAAACGTGGGGGTGATGTTTCAGACTCCAGACAATACACATATTATTACTCTTTGGTAGAGGgtaagtcatcagggttcagtatttcccaaagccagcagaactcatgcctg Alignment from Pairagon TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACA---TATTACCCTCTGGTGGAAG catacttgctagtgctaaatacaaaagttattttgttttgtttttgctagTATGCCATTGCGTTCCAGACCCCACCCTATCACAAGATGAAGGTTGAAAGACCCGTGACTGTGTTCCTTCAGCTGAAACGTAAACGTGGGGGTGATGTTTCAGACTCCAGACAATACACATATTATTACTCTTTGGTAGAGGgtaagtcatcagggttcagtatttcccaaagccagcagaactcatgcctg Alignment from Exonerate_protein2genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACA---TATTACCCTCTGGTGGAAG catacttgctagtgctaaatacaaaagttattttgttttgtttttgctagTATGCCATTGCGTTCCAGACCCCACCCTATCACAAGATGAAGGTTGAAAGACCCGTGACTGTGTTCCTTCAGCTGAAACGTAAACGTGGGGGTGATGTTTCAGACTCCAGACAATACACATATTATTACTCTTTGGTAGAGGgtaagtcatcagggttcagtatttcccaaagccagcagaactcatgcctg Alignment from Exonerate_coding2genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACA---TATTACCCTCTGGTGGAAG catacttgctagtgctaaatacaaaagttattttgttttgtttttgctagTATGCCATTGCGTTCCAGACCCCACCCTATCACAAGATGAAGGTTGAAAGACCCGTGACTGTGTTCCTTCAGCTGAAACGTAAACGTGGGGGTGATGTTTCAGACTCCAGACAATACACATATTATTACTCTTTGGTAGAGGgtaagtcatcagggttcagtatttcccaaagccagcagaactcatgcctg Alignment from GeneWise TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTAC---CCTCTGGTGGAAG catacttgctagtgctaaatacaaaagttattttgttttgtttttgctagTATGCCATTGCGTTCCAGACCCCACCCTATCACAAGATGAAGGTTGAAAGACCCGTGACTGTGTTCCTTCAGCTGAAACGTAAACGTGGGGGTGATGTTTCAGACTCCAGACAATACACATATTATTACTCTTTGGTAGAGGgtaagtcatcagggttcagtatttcccaaagccagcagaactcatgcctg #### Nfkb2_ID9834_12 --> 2 - 1 Original Alignment gtGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAg tattgcctctataaggaaccttataaggaatgctattgctgttgttttaggtGGGAGCCTTGGTTTTTTATCCCCCCCATTGGCCTATAATCCCTACCAATCTGGTGCTTCCCCTATGGGTTATTATCTGGGTGGGGGGGGTGGAACACAGATGGCTGGCTCTAGACGGGACACTGATGCTGGTGAGGGTGCTGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAAGCCCTTGACACATTGCACCGAggtgagcgctggcatcaaggttcacatgtgctattaaaagtgcaaggcagg Alignment from CESAR gtGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAg tattgcctctataaggaaccttataaggaatgctattgctgttgttttaggtGGGAGCCTTGGTTTTTTATCCCCCCCATTGGCCTATAATCCCTACCAATCTGGTGCTTCCCCTATGGGTTATTATCTGGGTGGGGGGGGTGGAACACAGATGGCTGGCTCTAGACGGGACACTGATGCTGGTGAGGGTGCTGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAAGCCCTTGACACATTGCACCGAggtgagcgctggcatcaaggttcacatgtgctattaaaagtgcaaggcagg Alignment from Spaln_aa2Genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tattgcctctataaggaaccttataaggaatgctattgctgttgttttagGTGGGAGCCTTGGTTTTTTATCCCCCCCATTGGCCTATAATCCCTACCAATCTGGTGCTTCCCCTATGGGTTATTATCTGGGTGGGGGGGGTGGAACACAGATGGCTGGCTCTAGACGGGACACTGATGCTGGTGAGGGTGCTGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAAGCCCTTGACACATTGCACCGAGgtgagcgctggcatcaaggttcacatgtgctattaaaagtgcaaggcagg Alignment from Spaln_nt2Genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tattgcctctataaggaaccttataaggaatgctattgctgttgttttagGTGGGAGCCTTGGTTTTTTATCCCCCCCATTGGCCTATAATCCCTACCAATCTGGTGCTTCCCCTATGGGTTATTATCTGGGTGGGGGGGGTGGAACACAGATGGCTGGCTCTAGACGGGACACTGATGCTGGTGAGGGTGCTGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAAGCCCTTGACACATTGCACCGAGgtgagcgctggcatcaaggttcacatgtgctattaaaagtgcaaggcagg Alignment from Pairagon GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tattgcctctataaggaaccttataaggaatgctattgctgttgttttagGTGGGAGCCTTGGTTTTTTATCCCCCCCATTGGCCTATAATCCCTACCAATCTGGTGCTTCCCCTATGGGTTATTATCTGGGTGGGGGGGGTGGAACACAGATGGCTGGCTCTAGACGGGACACTGATGCTGGTGAGGGTGCTGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAAGCCCTTGACACATTGCACCGAGgtgagcgctggcatcaaggttcacatgtgctattaaaagtgcaaggcagg Alignment from Exonerate_protein2genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tattgcctctataaggaaccttataaggaatgctattgctgttgttttagGTGGGAGCCTTGGTTTTTTATCCCCCCCATTGGCCTATAATCCCTACCAATCTGGTGCTTCCCCTATGGGTTATTATCTGGGTGGGGGGGGTGGAACACAGATGGCTGGCTCTAGACGGGACACTGATGCTGGTGAGGGTGCTGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAAGCCCTTGACACATTGCACCGAGgtgagcgctggcatcaaggttcacatgtgctattaaaagtgcaaggcagg Alignment from Exonerate_coding2genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tattgcctctataaggaaccttataaggaatgctattgctgttgttttagGTGGGAGCCTTGGTTTTTTATCCCCCCCATTGGCCTATAATCCCTACCAATCTGGTGCTTCCCCTATGGGTTATTATCTGGGTGGGGGGGGTGGAACACAGATGGCTGGCTCTAGACGGGACACTGATGCTGGTGAGGGTGCTGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAAGCCCTTGACACATTGCACCGAGgtgagcgctggcatcaaggttcacatgtgctattaaaagtgcaaggcagg Alignment from GeneWise GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tattgcctctataaggaaccttataaggaatgctattgctgttgttttagGTGGGAGCCTTGGTTTTTTATCCCCCCCATTGGCCTATAATCCCTACCAATCTGGTGCTTCCCCTATGGGTTATTATCTGGGTGGGGGGGGTGGAACACAGATGGCTGGCTCTAGACGGGACACTGATGCTGGTGAGGGTGCTGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAAGCCCTTGACACATTGCACCGAGgtgagcgctggcatcaaggttcacatgtgctattaaaagtgcaaggcagg #### Nfkb2_ID9836_14 --> 1 - 0 Original Alignment gCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG ttatgcagccaaaaaacacatgaaaaaaggttgtctccctgtgtcctcagcCCACTACACTTAGCTATTATCCATGGGCAGATAGGTATCATTGAACAGATTGCCCATGTCATTTACCATGCTCAGTACCTTGGTGTAATAAACCTCACTAACCACCTGCATCAGgttggtatgactttaaaattgtaagcaaggagtggaaggctaaccccaaa Alignment from CESAR gCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG ttatgcagccaaaaaacacatgaaaaaaggttgtctccctgtgtcctcagcCCACTACACTTAGCTATTATCCATGGGCAGATAGGTATCATTGAACAGATTGCCCATGTCATTTACCATGCTCAGTACCTTGGTGTAATAAACCTCACTAACCACCTGCATCAGgttggtatgactttaaaattgtaagcaaggagtggaaggctaacccgggt Alignment from Spaln_aa2Genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG ttatgcagccaaaaaacacatgaaaaaaggttgtctccctgtgtcctcagCCCACTACACTTAGCTATTATCCATGGGCAGATAGGTATCATTGAACAGATTGCCCATGTCATTTACCATGCTCAGTACCTTGGTGTAATAAACCTCACTAACCACCTGCATCAGgttggtatgactttaaaattgtaagcaaggagtggaaggctaaccccaaa Alignment from Spaln_nt2Genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG ttatgcagccaaaaaacacatgaaaaaaggttgtctccctgtgtcctcagCCCACTACACTTAGCTATTATCCATGGGCAGATAGGTATCATTGAACAGATTGCCCATGTCATTTACCATGCTCAGTACCTTGGTGTAATAAACCTCACTAACCACCTGCATCAGgttggtatgactttaaaattgtaagcaaggagtggaaggctaaccccaaa Alignment from Pairagon GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG ttatgcagccaaaaaacacatgaaaaaaggttgtctccctgtgtcctcagCCCACTACACTTAGCTATTATCCATGGGCAGATAGGTATCATTGAACAGATTGCCCATGTCATTTACCATGCTCAGTACCTTGGTGTAATAAACCTCACTAACCACCTGCATCAGgttggtatgactttaaaattgtaagcaaggagtggaaggctaaccccaaa Alignment from Exonerate_protein2genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG ttatgcagccaaaaaacacatgaaaaaaggttgtctccctgtgtcctcagCCCACTACACTTAGCTATTATCCATGGGCAGATAGGTATCATTGAACAGATTGCCCATGTCATTTACCATGCTCAGTACCTTGGTGTAATAAACCTCACTAACCACCTGCATCAGgttggtatgactttaaaattgtaagcaaggagtggaaggctaaccccaaa Alignment from Exonerate_coding2genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG ttatgcagccaaaaaacacatgaaaaaaggttgtctccctgtgtcctcagCCCACTACACTTAGCTATTATCCATGGGCAGATAGGTATCATTGAACAGATTGCCCATGTCATTTACCATGCTCAGTACCTTGGTGTAATAAACCTCACTAACCACCTGCATCAGgttggtatgactttaaaattgtaagcaaggagtggaaggctaaccccaaa Alignment from GeneWise GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG ttatgcagccaaaaaacacatgaaaaaaggttgtctccctgtgtcctcagCCCACTACACTTAGCTATTATCCATGGGCAGATAGGTATCATTGAACAGATTGCCCATGTCATTTACCATGCTCAGTACCTTGGTGTAATAAACCTCACTAACCACCTGCATCAGgttggtatgactttaaaattgtaagcaaggagtggaaggctaaccccaaa #### Nfkb2_ID9837_15 --> 0 - 1 Original Alignment ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGT---GCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGg ttgtaagcaaggagtggaaggctaacccgggtaattatctctgtttgcagACCCCGCTGCATCTTGCCTTAATCACTGGGCAGACAAGAGTGGTGAGCTTTCTGCTGCAGGTGGGTGCAGACCCCACACTGCTGGAGAGGCACGAA---TCTGCACTCCACCTGGCTCACACCTGTGAAAATTTCTTGCCGTCTTGGACCTCTCAGGAGCTCAGAGCAGGAGCAGCAGCTGCCCCTGAGTTGTTGCAGGCATTGTTACGCAGTGAAGCCCATGCTGTACCCCATATA---CATATGCCTGAGTTTGAGggtttgtggcgaactactcttgtccagagctaaaagccaaggcacaagaac Alignment from CESAR ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGTGCTGCA---GCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGg ttgtaagcaaggagtggaaggctaacccgggtaattatctctgtttgcagACCCCGCTGCATCTTGCCTTAATCACTGGGCAGACAAGAGTGGTGAGCTTTCTGCTGCAGGTGGGTGCAGACCCCACACTGCTGGAGAGGCAC---GAATCTGCACTCCACCTGGCTCACACCTGTGAAAATTTCTTGCCGTCTTGGACCTCTCAGGAGCTCAGAGCAGGAGCAGCAGCTGCCCCTGAGTTGTTGCAGGCATTGTTACGCAGTGAAGCCCATGCTGTACCCCATATA---CATATGCCTGAGTTTGAGggtttgtggcgaactactcttgtccagagctaaaagccaaggcacaagaac Alignment from Spaln_aa2Genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTG GCTCTCCGGGCAGGT---GCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG ttgtaagcaaggagtggaaggctaacccgggtaattatctctgtttgcagACCCCGCTGCATCTTGCCTTAATCACTGGGCAGACAAGAGTGGTGAGCTTTCTGCTGCAGGTGGGTGCAGACCCCACACTGCTGGAGAGGCAC---GAATCTGCACTCCACCTGgctcacacctgtgaaaatttcttgccgtcttggacctctcagGAGCTCAGAGCAGGAGCAGCAGCTGCCCCTGAGTTGTTGCAGGCATTGTTACGCAGTGAAGCCCATGCTGTACCCCATATA---CATATGCCTGAGTTTGAGGgtttgtggcgaactactcttgtccagagctaaaagccaaggcacaagaac Alignment from Spaln_nt2Genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTG GCTCTCCGGGCAGGTGCTGCAGC---CCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG ttgtaagcaaggagtggaaggctaacccgggtaattatctctgtttgcagACCCCGCTGCATCTTGCCTTAATCACTGGGCAGACAAGAGTGGTGAGCTTTCTGCTGCAGGTGGGTGCAGACCCCACACTGCTGGAGAGGCAC---GAATCTGCACTCCACCTGgctcacacctgtgaaaatttcttgccgtcttggacctctcagGAGCTCAGAGCAGGAGCAGCAGCTGCCCCTGAGTTGTTGCAGGCATTGTTACGCAGTGAAGCCCATGCTGTACCCCATATA---CATATGCCTGAGTTTGAGGgtttgtggcgaactactcttgtccagagctaaaagccaaggcacaagaac Alignment from Pairagon ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGTGCTGCA---GCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG ttgtaagcaaggagtggaaggctaacccgggtaattatctctgtttgcagACCCCGCTGCATCTTGCCTTAATCACTGGGCAGACAAGAGTGGTGAGCTTTCTGCTGCAGGTGGGTGCAGACCCCACACTGCTGGAGAGGCACGAA---TCTGCACTCCACCTGGCTCACACCTGTGAAAATTTCTTGCCGTCTTGGACCTCTCAGGAGCTCAGAGCAGGAGCAGCAGCTGCCCCTGAGTTGTTGCAGGCATTGTTACGCAGTGAAGCCCATGCTGTACCCCATATA---CATATGCCTGAGTTTGAGGgtttgtggcgaactactcttgtccagagctaaaagccaaggcacaagaac Alignment from Exonerate_protein2genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTG GCTCTCCGGGCAGGT---GCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG ttgtaagcaaggagtggaaggctaacccgggtaattatctctgtttgcagACCCCGCTGCATCTTGCCTTAATCACTGGGCAGACAAGAGTGGTGAGCTTTCTGCTGCAGGTGGGTGCAGACCCCACACTGCTGGAGAGGCAC---GAATCTGCACTCCACCTGgctcacacctgtgaaaatttcttgccgtcttggacctctcagGAGCTCAGAGCAGGAGCAGCAGCTGCCCCTGAGTTGTTGCAGGCATTGTTACGCAGTGAAGCCCATGCTGTACCCCATATA---CATATGCCTGAGTTTGAGGgtttgtggcgaactactcttgtccagagctaaaagccaaggcacaagaac Alignment from Exonerate_coding2genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTG GCTCTCCGGGCAGGT---GCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG ttgtaagcaaggagtggaaggctaacccgggtaattatctctgtttgcagACCCCGCTGCATCTTGCCTTAATCACTGGGCAGACAAGAGTGGTGAGCTTTCTGCTGCAGGTGGGTGCAGACCCCACACTGCTGGAGAGGCAC---GAATCTGCACTCCACCTGgctcacacctgtgaaaatttcttgccgtcttggacctctcagGAGCTCAGAGCAGGAGCAGCAGCTGCCCCTGAGTTGTTGCAGGCATTGTTACGCAGTGAAGCCCATGCTGTACCCCATATA---CATATGCCTGAGTTTGAGGgtttgtggcgaactactcttgtccagagctaaaagccaaggcacaagaac Alignment from GeneWise ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGT---GCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG ttgtaagcaaggagtggaaggctaacccgggtaattatctctgtttgcagACCCCGCTGCATCTTGCCTTAATCACTGGGCAGACAAGAGTGGTGAGCTTTCTGCTGCAGGTGGGTGCAGACCCCACACTGCTGGAGAGGCAC---GAATCTGCACTCCACCTGGCTCACACCTGTGAAAATTTCTTGCCGTCTTGGACCTCTCAGGAGCTCAGAGCAGGAGCAGCAGCTGCCCCTGAGTTGTTGCAGGCATTGTTACGCAGTGAAGCCCATGCTGTACCCCATATA---CATATGCCTGAGTTTGAGGgtttgtggcgaactactcttgtccagagctaaaagccaaggcacaagaac #### Nfkb2_ID9843_21 --> 0 - 1 Original Alignment CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAg gtcagttagactgctgaggcctcaaccatgggctgcttctcatcccacagTCAGCTGGTGGGGACTTGGTCGGGCTATTGGAGGCCTTATCTGACATGGGACTTCATGAGGGATTCAGGCTTCTGAAGGGTCCAGAGACCCGTGACAAGCTACCCAGTAAAggtgagtagaggacaggcaccttagatcttatgactgattagaggagacag Alignment from CESAR CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAg gtcagttagactgctgaggcctcaaccatgggctgcttctcatcccacagTCAGCTGGTGGGGACTTGGTCGGGCTATTGGAGGCCTTATCTGACATGGGACTTCATGAGGGATTCAGGCTTCTGAAGGGTCCAGAGACCCGTGACAAGCTACCCAGTAAAggtgagtagaggacaggcaccttagatcttatgactgattagaggagacag Alignment from Spaln_aa2Genome CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG gtcagttagactgctgaggcctcaaccatgggctgcttctcatcccacagTCAGCTGGTGGGGACTTGGTCGGGCTATTGGAGGCCTTATCTGACATGGGACTTCATGAGGGATTCAGGCTTCTGAAGGGTCCAGAGACCCGTGACAAGCTACCCAGTAAAGgtgagtagaggacaggcaccttagatcttatgactgattagaggagacag Alignment from Spaln_nt2Genome CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG gtcagttagactgctgaggcctcaaccatgggctgcttctcatcccacagTCAGCTGGTGGGGACTTGGTCGGGCTATTGGAGGCCTTATCTGACATGGGACTTCATGAGGGATTCAGGCTTCTGAAGGGTCCAGAGACCCGTGACAAGCTACCCAGTAAAGgtgagtagaggacaggcaccttagatcttatgactgattagaggagacag Alignment from Pairagon -----------------------------------------------------GCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG GTCAGTTAGACTGCTGAGGCCTCAACCATGGGCTGCTTCTCATCCCACAGTCAGCTGGTGGGGACTTGGTCGGGCTATTGGAGGCCTTATCTGACATGGGACTTCATGAGGGATTCAGGCTTCTGAAGGGTCCAGAGACCCGTGACAAGCTACCCAGTAAAGgtgagtagaggacaggcaccttagatcttatgactgattagaggagacag Alignment from Exonerate_protein2genome CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG gtcagttagactgctgaggcctcaaccatgggctgcttctcatcccacagTCAGCTGGTGGGGACTTGGTCGGGCTATTGGAGGCCTTATCTGACATGGGACTTCATGAGGGATTCAGGCTTCTGAAGGGTCCAGAGACCCGTGACAAGCTACCCAGTAAAGgtgagtagaggacaggcaccttagatcttatgactgattagaggagacag Alignment from Exonerate_coding2genome CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG gtcagttagactgctgaggcctcaaccatgggctgcttctcatcccacagTCAGCTGGTGGGGACTTGGTCGGGCTATTGGAGGCCTTATCTGACATGGGACTTCATGAGGGATTCAGGCTTCTGAAGGGTCCAGAGACCCGTGACAAGCTACCCAGTAAAGgtgagtagaggacaggcaccttagatcttatgactgattagaggagacag Alignment from GeneWise CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG gtcagttagactgctgaggcctcaaccatgggctgcttctcatcccacagTCAGCTGGTGGGGACTTGGTCGGGCTATTGGAGGCCTTATCTGACATGGGACTTCATGAGGGATTCAGGCTTCTGAAGGGTCCAGAGACCCGTGACAAGCTACCCAGTAAAGgtgagtagaggacaggcaccttagatcttatgactgattagaggagacag #### Nhlrc2_ID12135_5 --> 0 - 1 Original Alignment ATAGACCTGGAAGCTGAGAAGGTGACCACTGTGGCTGGTGTCGGTATTCAAGGGACAGATACAGAAGGGGGCGAGGAGGGAGACAAGCAGCCCATCAGCTCCCCGTGGGACGTTGCGCTTGGGACCTCAg tactctaaaagttgttatggctgtcatgccactcttaactgtttgcccagATAGACCTGGAAGCTGAAAAGGTGACAACTGTGGCAAGTGCTGGTATCCAAGGTACAGATACAGCAGGGGGTGAGGAGGGTGACAAGCAGCCAATCAGCTCCCAGTGGGATATTGCACTTGGGACCTCAggtacaatggctcagtagaacatactggtgatggaaaattggctctgcaaa Alignment from CESAR ATAGACCTGGAAGCTGAGAAGGTGACCACTGTGGCTGGTGTCGGTATTCAAGGGACAGATACAGAAGGGGGCGAGGAGGGAGACAAGCAGCCCATCAGCTCCCCGTGGGACGTTGCGCTTGGGACCTCAg tactctaaaagttgttatggctgtcatgccactcttaactgtttgcccagATAGACCTGGAAGCTGAAAAGGTGACAACTGTGGCAAGTGCTGGTATCCAAGGTACAGATACAGCAGGGGGTGAGGAGGGTGACAAGCAGCCAATCAGCTCCCAGTGGGATATTGCACTTGGGACCTCAggtacaatggctcagtagaacatactggtgatggaaaattggctctgcaaa Alignment from Spaln_aa2Genome ATAGACCTGGAAGCTGAGAAGGTGACCACTGTGGCTGGTGTCGGTATTCAAGGGACAGATACAGAAGGGGGCGAGGAGGGAGACAAGCAGCCCATCAGCTCCCCGTGGGACGTTGCGCTTGGGACCTCAG tactctaaaagttgttatggctgtcatgccactcttaactgtttgcccagATAGACCTGGAAGCTGAAAAGGTGACAACTGTGGCAAGTGCTGGTATCCAAGGTACAGATACAGCAGGGGGTGAGGAGGGTGACAAGCAGCCAATCAGCTCCCAGTGGGATATTGCACTTGGGACCTCAGgtacaatggctcagtagaacatactggtgatggaaaattggctctgcaaa Alignment from Spaln_nt2Genome ATAGACCTGGAAGCTGAGAAGGTGACCACTGTGGCTGGTGTCGGTATTCAAGGGACAGATACAGAAGGGGGCGAGGAGGGAGACAAGCAGCCCATCAGCTCCCCGTGGGACGTTGCGCTTGGGACCTCAG tactctaaaagttgttatggctgtcatgccactcttaactgtttgcccagATAGACCTGGAAGCTGAAAAGGTGACAACTGTGGCAAGTGCTGGTATCCAAGGTACAGATACAGCAGGGGGTGAGGAGGGTGACAAGCAGCCAATCAGCTCCCAGTGGGATATTGCACTTGGGACCTCAGgtacaatggctcagtagaacatactggtgatggaaaattggctctgcaaa Alignment from Pairagon ATAGACCTGGAAGCTGAGAAGGTGACCACTGTGGCTGGTGTCGGTATTCAAGGGACAGATACAGAAGGGGGCGAGGAGGGAGACAAGCAGCCCATCAGCTCCCCGTGGGACGTTGCGCTTGGGACCTCAG tactctaaaagttgttatggctgtcatgccactcttaactgtttgcccagATAGACCTGGAAGCTGAAAAGGTGACAACTGTGGCAAGTGCTGGTATCCAAGGTACAGATACAGCAGGGGGTGAGGAGGGTGACAAGCAGCCAATCAGCTCCCAGTGGGATATTGCACTTGGGACCTCAGgtacaatggctcagtagaacatactggtgatggaaaattggctctgcaaa Alignment from Exonerate_protein2genome ATAGACCTGGAAGCTGAGAAGGTGACCACTGTGGCTGGTGTCGGTATTCAAGGGACAGATACAGAAGGGGGCGAGGAGGGAGACAAGCAGCCCATCAGCTCCCCGTGGGACGTTGCGCTTGGGACCTCAG tactctaaaagttgttatggctgtcatgccactcttaactgtttgcccagATAGACCTGGAAGCTGAAAAGGTGACAACTGTGGCAAGTGCTGGTATCCAAGGTACAGATACAGCAGGGGGTGAGGAGGGTGACAAGCAGCCAATCAGCTCCCAGTGGGATATTGCACTTGGGACCTCAGgtacaatggctcagtagaacatactggtgatggaaaattggctctgcaaa Alignment from Exonerate_coding2genome ATAGACCTGGAAGCTGAGAAGGTGACCACTGTGGCTGGTGTCGGTATTCAAGGGACAGATACAGAAGGGGGCGAGGAGGGAGACAAGCAGCCCATCAGCTCCCCGTGGGACGTTGCGCTTGGGACCTCAG tactctaaaagttgttatggctgtcatgccactcttaactgtttgcccagATAGACCTGGAAGCTGAAAAGGTGACAACTGTGGCAAGTGCTGGTATCCAAGGTACAGATACAGCAGGGGGTGAGGAGGGTGACAAGCAGCCAATCAGCTCCCAGTGGGATATTGCACTTGGGACCTCAGgtacaatggctcagtagaacatactggtgatggaaaattggctctgcaaa Alignment from GeneWise ATAGACCTGGAAGCTGAGAAGGTGACCACTGTGGCTGGTGTCGGTATTCAAGGGACAGATACAGAAGGGGGCGAGGAGGGAGACAAGCAGCCCATCAGCTCCCCGTGGGACGTTGCGCTTGGGACCTCAG tactctaaaagttgttatggctgtcatgccactcttaactgtttgcccagATAGACCTGGAAGCTGAAAAGGTGACAACTGTGGCAAGTGCTGGTATCCAAGGTACAGATACAGCAGGGGGTGAGGAGGGTGACAAGCAGCCAATCAGCTCCCAGTGGGATATTGCACTTGGGACCTCAGgtacaatggctcagtagaacatactggtgatggaaaattggctctgcaaa #### Nhlrc2_ID12137_6 --> 2 - 2 Original Alignment gtTCAGAGGTCCAAAGAAATGACATCCTGTGGATAGCCATGGCAGGGACTCATCAGATATGGGCACTCCTCCTAGACTCTGGCACACTGCCAAAGAAAag tacctctcgtagcagtgttgtcacttgtaacctgtcacttttcttcccaggtGCGGAGGTGCAGAGAAATGATATCCTATGGCTAGCCATGGCAGGAACCCATCAGGTATGGGCACTTCTGGTAGACTCAGGTACACTTCCAAAGACAaggtgagttgctgattcagcacagcaaacctttcccaactagggcaccatat Alignment from CESAR gtTCAGAGGTCCAAAGAAATGACATCCTGTGGATAGCCATGGCAGGGACTCATCAGATATGGGCACTCCTCCTAGACTCTGGCACACTGCCAAAGAAAag tacctctcgtagcagtgttgtcacttgtaacctgtcacttttcttcccaggtGCGGAGGTGCAGAGAAATGATATCCTATGGCTAGCCATGGCAGGAACCCATCAGGTATGGGCACTTCTGGTAGACTCAGGTACACTTCCAAAGACAaggtgagttgctgattcagcacagcaaacctttcccaactagggcaccatat Alignment from Spaln_aa2Genome GTTCAGAGGTCCAAAGAAATGACATCCTGTGGATAGCCATGGCAGGGACTCATCAGATATGGGCACTCCTCCTAGACTCTGGCACACTGCCAAAGAAAAG tacctctcgtagcagtgttgtcacttgtaacctgtcacttttcttcccagGTGCGGAGGTGCAGAGAAATGATATCCTATGGCTAGCCATGGCAGGAACCCATCAGGTATGGGCACTTCTGGTAGACTCAGGTACACTTCCAAAGACAAGgtgagttgctgattcagcacagcaaacctttcccaactagggcaccatat Alignment from Spaln_nt2Genome GTTCAGAGGTCCAAAGAAATGACATCCTGTGGATAGCCATGGCAGGGACTCATCAGATATGGGCACTCCTCCTAGACTCTGGCACACTGCCAAAGAAAAG tacctctcgtagcagtgttgtcacttgtaacctgtcacttttcttcccagGTGCGGAGGTGCAGAGAAATGATATCCTATGGCTAGCCATGGCAGGAACCCATCAGGTATGGGCACTTCTGGTAGACTCAGGTACACTTCCAAAGACAAGgtgagttgctgattcagcacagcaaacctttcccaactagggcaccatat Alignment from Pairagon GTTCAGAGGTCCAAAGAAATGACATCCTGTGGATAGCCATGGCAGGGACTCATCAGATATGGGCACTCCTCCTAGACTCTGGCACACTGCCAAAGAAAAG tacctctcgtagcagtgttgtcacttgtaacctgtcacttttcttcccagGTGCGGAGGTGCAGAGAAATGATATCCTATGGCTAGCCATGGCAGGAACCCATCAGGTATGGGCACTTCTGGTAGACTCAGGTACACTTCCAAAGACAAGgtgagttgctgattcagcacagcaaacctttcccaactagggcaccatat Alignment from Exonerate_protein2genome GTTCAGAGGTCCAAAGAAATGACATCCTGTGGATAGCCATGGCAGGGACTCATCAGATATGGGCACTCCTCCTAGACTCTGGCACACTGCCAAAGAAAAG tacctctcgtagcagtgttgtcacttgtaacctgtcacttttcttcccagGTGCGGAGGTGCAGAGAAATGATATCCTATGGCTAGCCATGGCAGGAACCCATCAGGTATGGGCACTTCTGGTAGACTCAGGTACACTTCCAAAGACAAGgtgagttgctgattcagcacagcaaacctttcccaactagggcaccatat Alignment from Exonerate_coding2genome GTTCAGAGGTCCAAAGAAATGACATCCTGTGGATAGCCATGGCAGGGACTCATCAGATATGGGCACTCCTCCTAGACTCTGGCACACTGCCAAAGAAAAG tacctctcgtagcagtgttgtcacttgtaacctgtcacttttcttcccagGTGCGGAGGTGCAGAGAAATGATATCCTATGGCTAGCCATGGCAGGAACCCATCAGGTATGGGCACTTCTGGTAGACTCAGGTACACTTCCAAAGACAAGgtgagttgctgattcagcacagcaaacctttcccaactagggcaccatat Alignment from GeneWise GTTCAGAGGTCCAAAGAAATGACATCCTGTGGATAGCCATGGCAGGGACTCATCAGATATGGGCACTCCTCCTAGACTCTGGCACACTGCCAAAGAAAAG tacctctcgtagcagtgttgtcacttgtaacctgtcacttttcttcccagGTGCGGAGGTGCAGAGAAATGATATCCTATGGCTAGCCATGGCAGGAACCCATCAGGTATGGGCACTTCTGGTAGACTCAGGTACACTTCCAAAGACAAGgtgagttgctgattcagcacagcaaacctttcccaactagggcaccatat #### Nmrk1_ID4436_2 --> 1 - 0 Original Alignment tGTGACAAACGGAGGGAAGACGACACTGGCTAAGAGCTTGCAGAAGCACCTTCCCAACTGCAGCGTCATATCTCAGGATGACTTCTTCAAG ctatacttagtacttgatagggagaatctctttcaacataatcactccagtGTCACGAATGGAGGAAAGACAACCCTTGCTAAGAGCTTGCAGAAGTATCTCCCCAATTGCAGTGTCATATCTCAGGATGATTTCTTCAATgtatgtaggaagggtctatggacagcaaaaagtaggctgttattataaaa Alignment from CESAR tGTGACAAACGGAGGGAAGACGACACTGGCTAAGAGCTTGCAGAAGCACCTTCCCAACTGCAGCGTCATATCTCAGGATGACTTCTTCAAG ctatacttagtacttgatagggagaatctctttcaacataatcactccagtGTCACGAATGGAGGAAAGACAACCCTTGCTAAGAGCTTGCAGAAGTATCTCCCCAATTGCAGTGTCATATCTCAGGATGATTTCTTCAATgtatgtaggaagggtctatggacagcaaaaagtaggctgttattataaaa Alignment from Spaln_aa2Genome TGTGACAAACGGAGGGAAGACGACACTGGCTAAGAGCTTGCAGAAGCACCTTCCCAACTGCAGCGTCATATCTCAGGATGACTTCTTCAAG ctatacttagtacttgatagggagaatctctttcaacataatcactccagTGTCACGAATGGAGGAAAGACAACCCTTGCTAAGAGCTTGCAGAAGTATCTCCCCAATTGCAGTGTCATATCTCAGGATGATTTCTTCAATgtatgtaggaagggtctatggacagcaaaaagtaggctgttattataaaa Alignment from Spaln_nt2Genome TGTGACAAACGGAGGGAAGACGACACTGGCTAAGAGCTTGCAGAAGCACCTTCCCAACTGCAGCGTCATATCTCAGGATGACTTCTTCAAG ctatacttagtacttgatagggagaatctctttcaacataatcactccagTGTCACGAATGGAGGAAAGACAACCCTTGCTAAGAGCTTGCAGAAGTATCTCCCCAATTGCAGTGTCATATCTCAGGATGATTTCTTCAATgtatgtaggaagggtctatggacagcaaaaagtaggctgttattataaaa Alignment from Pairagon TGTGACAAACGGAGGGAAGACGACACTGGCTAAGAGCTTGCAGAAGCACCTTCCCAACTGCAGCGTCATATCTCAGGATGACTTCTTCAAG ctatacttagtacttgatagggagaatctctttcaacataatcactccagTGTCACGAATGGAGGAAAGACAACCCTTGCTAAGAGCTTGCAGAAGTATCTCCCCAATTGCAGTGTCATATCTCAGGATGATTTCTTCAATgtatgtaggaagggtctatggacagcaaaaagtaggctgttattataaaa Alignment from Exonerate_protein2genome TGTGACAAACGGAGGGAAGACGACACTGGCTAAGAGCTTGCAGAAGCACCTTCCCAACTGCAGCGTCATATCTCAGGATGACTTCTTCAAG ctatacttagtacttgatagggagaatctctttcaacataatcactccagTGTCACGAATGGAGGAAAGACAACCCTTGCTAAGAGCTTGCAGAAGTATCTCCCCAATTGCAGTGTCATATCTCAGGATGATTTCTTCAATgtatgtaggaagggtctatggacagcaaaaagtaggctgttattataaaa Alignment from Exonerate_coding2genome TGTGACAAACGGAGGGAAGACGACACTGGCTAAGAGCTTGCAGAAGCACCTTCCCAACTGCAGCGTCATATCTCAGGATGACTTCTTCAAG ctatacttagtacttgatagggagaatctctttcaacataatcactccagTGTCACGAATGGAGGAAAGACAACCCTTGCTAAGAGCTTGCAGAAGTATCTCCCCAATTGCAGTGTCATATCTCAGGATGATTTCTTCAATgtatgtaggaagggtctatggacagcaaaaagtaggctgttattataaaa Alignment from GeneWise AAGAGATTTGTCATTGGAATTGGTGGTGTGACAAACGGAGGGAAGACGACACTGGCTAAGAGCTTGCAGAAGCACCTTCCCAACTGCAGCGTCATATCTCAGGATGACTTCTTCAAG ctatacttagtacttgatagggagAATCTCTTTCAACATAATCACTCCAGTGTCACGAATGGAGGAAAGACAACCCTTGCTAAGAGCTTGCAGAAGTATCTCCCCAATTGCAGTGTCATATCTCAGGATGATTTCTTCAATgtatgtaggaagggtctatggacagcaaaaagtaggctgttattataaaa #### Noc3l_ID7656_19 --> 0 - 2 Original Alignment AGACATTACCATCCCATTGTGCGAAGGTTTGCAGCACATCTGCTTGCTGGGGCACCATCCGAAGGCTCTGAGGCCCTCAAGCCCGAGCTGAGCCGAag gtgtccccacaaagtctgagagagagttctctcaactcctgcctctaaagAGACATCACCATCTCATTGTACAAAAGTTTGCAGCACACTTACTTACTGGGGCACCTTCCGAGGGTTCTGAGGCCCTCAAGCCTGAGCTGAGCCAGaggtaggcgtagggcatgcataggagtcaggtgtgacaacctcctggacagc Alignment from CESAR AGACATTACCATCCCATTGTGCGAAGGTTTGCAGCACATCTGCTTGCTGGGGCACCATCCGAAGGCTCTGAGGCCCTCAAGCCCGAGCTGAGCCGAag gtgtccccacaaagtctgagagagagttctctcaactcctgcctctaaagAGACATCACCATCTCATTGTACAAAAGTTTGCAGCACACTTACTTACTGGGGCACCTTCCGAGGGTTCTGAGGCCCTCAAGCCTGAGCTGAGCCAGaggtaggcgtagggcatgcataggagtcaggtgtgacaacctcctggacagc Alignment from Spaln_aa2Genome AGACATTACCATCCCATTGTGCGAAGGTTTGCAGCACATCTGCTTGCTGGGGCACCATCCGAAGGCTCTGAGGCCCTCAAGCCCGAGCTGAGCCGAAG gtgtccccacaaagtctgagagagagttctctcaactcctgcctctaaagAGACATCACCATCTCATTGTACAAAAGTTTGCAGCACACTTACTTACTGGGGCACCTTCCGAGGGTTCTGAGGCCCTCAAGCCTGAGCTGAGCCAGAGgtaggcgtagggcatgcataggagtcaggtgtgacaacctcctggacagc Alignment from Spaln_nt2Genome AGACATTACCATCCCATTGTGCGAAGGTTTGCAGCACATCTGCTTGCTGGGGCACCATCCGAAGGCTCTGAGGCCCTCAAGCCCGAGCTGAGCCGAAG gtgtccccacaaagtctgagagagagttctctcaactcctgcctctaaagAGACATCACCATCTCATTGTACAAAAGTTTGCAGCACACTTACTTACTGGGGCACCTTCCGAGGGTTCTGAGGCCCTCAAGCCTGAGCTGAGCCAGAGgtaggcgtagggcatgcataggagtcaggtgtgacaacctcctggacagc Alignment from Pairagon AGACATTACCATCCCATTGTGCGAAGGTTTGCAGCACATCTGCTTGCTGGGGCACCATCCGAAGGCTCTGAGGCCCTCAAGCCCGAGCTGAGCCGAAG gtgtccccacaaagtctgagagagagttctctcaactcctgcctctaaagAGACATCACCATCTCATTGTACAAAAGTTTGCAGCACACTTACTTACTGGGGCACCTTCCGAGGGTTCTGAGGCCCTCAAGCCTGAGCTGAGCCAGAGgtaggcgtagggcatgcataggagtcaggtgtgacaacctcctggacagc Alignment from Exonerate_protein2genome AGACATTACCATCCCATTGTGCGAAGGTTTGCAGCACATCTGCTTGCTGGGGCACCATCCGAAGGCTCTGAGGCCCTCAAGCCCGAGCTGAGCCGAAG gtgtccccacaaagtctgagagagagttctctcaactcctgcctctaaagAGACATCACCATCTCATTGTACAAAAGTTTGCAGCACACTTACTTACTGGGGCACCTTCCGAGGGTTCTGAGGCCCTCAAGCCTGAGCTGAGCCAGAGgtaggcgtagggcatgcataggagtcaggtgtgacaacctcctggacagc Alignment from Exonerate_coding2genome AGACATTACCATCCCATTGTGCGAAGGTTTGCAGCACATCTGCTTGCTGGGGCACCATCCGAAGGCTCTGAGGCCCTCAAGCCCGAGCTGAGCCGAAG gtgtccccacaaagtctgagagagagttctctcaactcctgcctctaaagAGACATCACCATCTCATTGTACAAAAGTTTGCAGCACACTTACTTACTGGGGCACCTTCCGAGGGTTCTGAGGCCCTCAAGCCTGAGCTGAGCCAGAGgtaggcgtagggcatgcataggagtcaggtgtgacaacctcctggacagc Alignment from GeneWise AGACATTACCATCCCATTGTGCGAAGGTTTGCAGCACATCTGCTTGCTGGGGCACCATCCGAAGGCTCTGAGGCCCTCAAGCCCGAGCTGAGCCGAAG gtgtccccacaaagtctgagagagagttctctcaactcctgcctctaaagAGACATCACCATCTCATTGTACAAAAGTTTGCAGCACACTTACTTACTGGGGCACCTTCCGAGGGTTCTGAGGCCCTCAAGCCTGAGCTGAGCCAGAGgtaggcgtagggcatgcataggagtcaggtgtgacaacctcctggacagc #### Noc3l_ID7659_16 --> 2 - 1 Original Alignment gtGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAg catttggtctccctttcatttcactaaatcgtgtgttctctttcccacaggaGATGATTTGAATATTGACCCCATGAAATTTTATACCCCACTATTTCAGACACTATTTACATTGCATGCAggtatttcattgtagcttagagcgtttttattcagtggttgctagtattga Alignment from CESAR gtGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAg catttggtctccctttcatttcactaaatcgtgtgttctctttcccacaggaGATGATTTGAATATTGACCCCATGAAATTTTATACCCCACTATTTCAGACACTATTTACATTGCATGCAggtatttcattgtagcttagagcgtttttattcagtggttgctagtattga Alignment from Spaln_aa2Genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG catttggtctccctttcatttcactaaatcgtgtgttctctttcccacagGAGATGATTTGAATATTGACCCCATGAAATTTTATACCCCACTATTTCAGACACTATTTACATTGCATGCAGgtatttcattgtagcttagagcgtttttattcagtggttgctagtattga Alignment from Spaln_nt2Genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG catttggtctccctttcatttcactaaatcgtgtgttctctttcccacagGAGATGATTTGAATATTGACCCCATGAAATTTTATACCCCACTATTTCAGACACTATTTACATTGCATGCAGgtatttcattgtagcttagagcgtttttattcagtggttgctagtattga Alignment from Pairagon GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG catttggtctccctttcatttcactaaatcgtgtgttctctttcccacagGAGATGATTTGAATATTGACCCCATGAAATTTTATACCCCACTATTTCAGACACTATTTACATTGCATGCAGgtatttcattgtagcttagagcgtttttattcagtggttgctagtattga Alignment from Exonerate_protein2genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG catttggtctccctttcatttcactaaatcgtgtgttctctttcccacagGAGATGATTTGAATATTGACCCCATGAAATTTTATACCCCACTATTTCAGACACTATTTACATTGCATGCAGgtatttcattgtagcttagagcgtttttattcagtggttgctagtattga Alignment from Exonerate_coding2genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG catttggtctccctttcatttcactaaatcgtgtgttctctttcccacagGAGATGATTTGAATATTGACCCCATGAAATTTTATACCCCACTATTTCAGACACTATTTACATTGCATGCAGgtatttcattgtagcttagagcgtttttattcagtggttgctagtattga Alignment from GeneWise GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG catttggtctccctttcatttcactaaatcgtgtgttctctttcccacagGAGATGATTTGAATATTGACCCCATGAAATTTTATACCCCACTATTTCAGACACTATTTACATTGCATGCAGgtatttcattgtagcttagagcgtttttattcagtggttgctagtattga #### Noc3l_ID7660_15 --> 0 - 1 Original Alignment GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAg gggatagaacgcatgcagtttagttccttggtggccttctctgtctttagGAACTTAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATGTTCTTTCTGGACCAggtatgaagtccatttggtctccctttcatttcactaaactcgggtttcat Alignment from CESAR GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAg gggatagaacgcatgcagtttagttccttggtggccttctctgtctttagGAACTTAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATGTTCTTTCTGGACCAggtatgaagtccatttggtctccctttcatttcactaaatcgtgtgttctc Alignment from Spaln_aa2Genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG gggatagaacgcatgcagtttagttccttggtggccttctctgtctttagGAACTTAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATGTTCTTTCTGGACCAGgtatgaagtccatttggtctccctttcatttcactaaactcgggtttcat Alignment from Spaln_nt2Genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG gggatagaacgcatgcagtttagttccttggtggccttctctgtctttagGAACTTAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATGTTCTTTCTGGACCAGgtatgaagtccatttggtctccctttcatttcactaaactcgggtttcat Alignment from Pairagon GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG gggatagaacgcatgcagtttagttccttggtggccttctctgtctttagGAACTTAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATGTTCTTTCTGGACCAGgtatgaagtccatttggtctccctttcatttcactaaactcgggtttcat Alignment from Exonerate_protein2genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG gggatagaacgcatgcagtttagttccttggtggccttctctgtctttagGAACTTAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATGTTCTTTCTGGACCAGgtatgaagtccatttggtctccctttcatttcactaaactcgggtttcat Alignment from Exonerate_coding2genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG gggatagaacgcatgcagtttagttccttggtggccttctctgtctttagGAACTTAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATGTTCTTTCTGGACCAGgtatgaagtccatttggtctccctttcatttcactaaactcgggtttcat Alignment from GeneWise GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGA------------------------------------------------------ gggatagaacgcatgcagtttagttccttggtggccttctctgtctttagGAACTTAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATGTTCTTTCTGGACCAGGTATGAAGTCCATTTGGTCTCCCTTTCATTTCACTAAACTCGGGTTTCAT #### Noc3l_ID7671_4 --> 1 - 1 Original Alignment tGAACCAGTCCATATCAAGAAACGAAAGCATGAGAGTGTGATAGAGAAATATGAAAAAGTGCCAAGAACTCTGCAAACCGCACCGGAGAAGGAGTTGATTCACCTGCTCCCTATCAAGGACAAGAGTGGCATCATCCCTCAGGCTCGGGAGAAGCCGg ctctcagctccattgacatcacaaaaaacaacttaaccttctctttccagtGAACCCGTTGACATCAAGAAACGAAATCATGAAAGTGTGATAGAAAAATATGAAAAAGTACCAAGAACTTTACAGACTGCTCCTGAAAAGGAGTTGAACCACCTGTTGCTTATCAAGGACAAGAGCGGAATCATCCCCCAGGCCCGAGAGAAGCCAggtaagccttgtggatgtcaagcttacacacactccatgctaaatgtgcaa Alignment from CESAR tGAACCAGTCCATATCAAGAAACGAAAGCATGAGAGTGTGATAGAGAAATATGAAAAAGTGCCAAGAACTCTGCAAACCGCACCGGAGAAGGAGTTGATTCACCTGCTCCCTATCAAGGACAAGAGTGGCATCATCCCTCAGGCTCGGGAGAAGCCGg ctctcagctccattgacatcacaaaaaacaacttaaccttctctttccagtGAACCCGTTGACATCAAGAAACGAAATCATGAAAGTGTGATAGAAAAATATGAAAAAGTACCAAGAACTTTACAGACTGCTCCTGAAAAGGAGTTGAACCACCTGTTGCTTATCAAGGACAAGAGCGGAATCATCCCCCAGGCCCGAGAGAAGCCAggtaagccttgtggatgtcaagcttacacacactccatgctaaatgtgcaa Alignment from Spaln_aa2Genome TGAACCAGTCCATATCAAGAAACGAAAGCATGAGAGTGTGATAGAGAAATATGAAAAAGTGCCAAGAACTCTGCAAACCGCACCGGAGAAGGAGTTGATTCACCTGCTCCCTATCAAGGACAAGAGTGGCATCATCCCTCAGGCTCGGGAGAAGCCGG ctctcagctccattgacatcacaaaaaacaacttaaccttctctttccagTGAACCCGTTGACATCAAGAAACGAAATCATGAAAGTGTGATAGAAAAATATGAAAAAGTACCAAGAACTTTACAGACTGCTCCTGAAAAGGAGTTGAACCACCTGTTGCTTATCAAGGACAAGAGCGGAATCATCCCCCAGGCCCGAGAGAAGCCAGgtaagccttgtggatgtcaagcttacacacactccatgctaaatgtgcaa Alignment from Spaln_nt2Genome TGAACCAGTCCATATCAAGAAACGAAAGCATGAGAGTGTGATAGAGAAATATGAAAAAGTGCCAAGAACTCTGCAAACCGCACCGGAGAAGGAGTTGATTCACCTGCTCCCTATCAAGGACAAGAGTGGCATCATCCCTCAGGCTCGGGAGAAGCCGG ctctcagctccattgacatcacaaaaaacaacttaaccttctctttccagTGAACCCGTTGACATCAAGAAACGAAATCATGAAAGTGTGATAGAAAAATATGAAAAAGTACCAAGAACTTTACAGACTGCTCCTGAAAAGGAGTTGAACCACCTGTTGCTTATCAAGGACAAGAGCGGAATCATCCCCCAGGCCCGAGAGAAGCCAGgtaagccttgtggatgtcaagcttacacacactccatgctaaatgtgcaa Alignment from Pairagon TGAACCAGTCCATATCAAGAAACGAAAGCATGAGAGTGTGATAGAGAAATATGAAAAAGTGCCAAGAACTCTGCAAACCGCACCGGAGAAGGAGTTGATTCACCTGCTCCCTATCAAGGACAAGAGTGGCATCATCCCTCAGGCTCGGGAGAAGCCGG ctctcagctccattgacatcacaaaaaacaacttaaccttctctttccagTGAACCCGTTGACATCAAGAAACGAAATCATGAAAGTGTGATAGAAAAATATGAAAAAGTACCAAGAACTTTACAGACTGCTCCTGAAAAGGAGTTGAACCACCTGTTGCTTATCAAGGACAAGAGCGGAATCATCCCCCAGGCCCGAGAGAAGCCAGgtaagccttgtggatgtcaagcttacacacactccatgctaaatgtgcaa Alignment from Exonerate_protein2genome TGAACCAGTCCATATCAAGAAACGAAAGCATGAGAGTGTGATAGAGAAATATGAAAAAGTGCCAAGAACTCTGCAAACCGCACCGGAGAAGGAGTTGATTCACCTGCTCCCTATCAAGGACAAGAGTGGCATCATCCCTCAGGCTCGGGAGAAGCCGG ctctcagctccattgacatcacaaaaaacaacttaaccttctctttccagTGAACCCGTTGACATCAAGAAACGAAATCATGAAAGTGTGATAGAAAAATATGAAAAAGTACCAAGAACTTTACAGACTGCTCCTGAAAAGGAGTTGAACCACCTGTTGCTTATCAAGGACAAGAGCGGAATCATCCCCCAGGCCCGAGAGAAGCCAGgtaagccttgtggatgtcaagcttacacacactccatgctaaatgtgcaa Alignment from Exonerate_coding2genome TGAACCAGTCCATATCAAGAAACGAAAGCATGAGAGTGTGATAGAGAAATATGAAAAAGTGCCAAGAACTCTGCAAACCGCACCGGAGAAGGAGTTGATTCACCTGCTCCCTATCAAGGACAAGAGTGGCATCATCCCTCAGGCTCGGGAGAAGCCGG ctctcagctccattgacatcacaaaaaacaacttaaccttctctttccagTGAACCCGTTGACATCAAGAAACGAAATCATGAAAGTGTGATAGAAAAATATGAAAAAGTACCAAGAACTTTACAGACTGCTCCTGAAAAGGAGTTGAACCACCTGTTGCTTATCAAGGACAAGAGCGGAATCATCCCCCAGGCCCGAGAGAAGCCAGgtaagccttgtggatgtcaagcttacacacactccatgctaaatgtgcaa Alignment from GeneWise TGAACCAGTCCATATCAAGAAACGAAAGCATGAGAGTGTGATAGAGAAATATGAAAAAGTGCCAAGAACTCTGCAAACCGCACCGGAGAAGGAGTTGATTCACCTGCTCCCTATCAAGGACAAGAGTGGCATCATCCCTCAGGCTCGGGAGAAGCCG- ctctcagctccattgacatcacaaaaaacaacttaaccttctctttccagTGAACCCGTTGACATCAAGAAACGAAATCATGAAAGTGTGATAGAAAAATATGAAAAAGTACCAAGAACTTTACAGACTGCTCCTGAAAAGGAGTTGAACCACCTGTTGCTTATCAAGGACAAGAGCGGAATCATCCCCCAGGCCCGAGAGAAGCCAGgtaagccttgtggatgtcaagcttacacacactccatgctaaatgtgcaa #### Npas4_ID774_7 --> 1 - 1 Original Alignment tGACACGGAAGCCTGGAGCCTCCGCCAGCAGCTAAACTCTGAAGACACCCAGGCAGCCTATGTCCTAGGAACCCCAGCTGTGCTACCCTCATTCTCTGAGAATGTCTTCTCCCAGGAGCAATGCTCTAATCCACTCTTTACACCATCCCTGGGGACTCCTAGAAGTGCCAGCTTCCCCAGGGCTCCTGAACTAGGTGTGATCTCAACACCAGAAGAGCTTCCCCAACCCTCCAAAGAGCTGGACTTCAGTTACCTGCCATTCCCTGCTAGGCCTGAGCCTTCCCTCCAAGCAGACCTGAGCAAGGATTTGGTGTGTACTCCACCTTACACACCCCACCAGCCAGGAGGCTGTGCCTTCCTCTTCAGCCTCCATGAACCCTTCCAGACTCACTTGCCCCCTCCGTCCAGCTCTCTCCAAGAACAGCTGACACCAAGTACAGTGACTTTCTCTGAACAGTTGACACCCAGCAGTGCTACCTTCCCAGACCCACTAACCAGTTCACTACAAGGACAGTTGACAGAAAGCTCAGCCAGAAGCTTTGAAGACCAGTTGACTCCATGCACCTCTTCCTTCCCTGACCAGCTACTTCCCAGCACTGCCACATTCCCAGAGCCTCTGGGCAGCCCCGCCCATGAGCAGCTGACTCCTCCCAGCACAGCATTCCAGGCTCATCTGAACAGCCCCAGCCAAACCTTCCCAGAGCAACTGAGCCCCAATCCTACCAAGACTTACTTCGCCCAGGAGGGATGCAGTTTTCTCTATGAGAAGTTGCCCCCAAGTCCTAGCAGCCCTGGTAATGGGGACTGTACACTCCTGGCCCTAGCTCAGCTCCGGGGCCCCCTCTCTGTGGATGTCCCCCTGGTGCCCGAAGGCCTGCTCACACCTGAGGCCTCTCCAGTCAAGCAAAGTTTCTTCCACTACACAGAGAAAGAGCAAAATGAGATAGATCGTCTCATTCAGCAGATCAGCCAGTTGGCTCAGGGCGTGGACAGGCCCTTCTCAGCTGAGGCTGGCACTGGGGGGCTGGAGCCACTTGGAGGGCTGGAGCCCCTGAACCCTAACCTGTCCCTGTCAGGGGCTGGACCCCCTGTGCTTAGCCTGGATCTTAAACCCTGGAAATGCCAGGAGCTGGACTTCCTGGTTGACCCTGATAATTTATTCCTGGAAGAGACGCCAGTGGAAGACATCTTCATGGATCTTTCTACTCCAGACCCCAATGGGGAATGGGGTTCAGGGGATCCTGAGGCAGAGGTCCCAGGAGGGACCCTGTCACCTTGCAACAACCTGTCCCCAGAAGATCACAGCTTCCTGGAGGACTTGGCCACCTATGAAACCGCCTTTGAGACAGGTGTCTCAACATTCCCCTACGAAGGGTTTGCTGATGAGTTGCATCAACTCCAGAGCCAAGTTCAAGACAGCTTCCATGAAg aaaaaactgcaatggagccatcaatggaaatcacattttctgccttatagtGACATGGAAGCCTGGAGCCTCCGTCAACAGCTCAATACTGAAGACACCCAAACAGCCTACATTTTGGGAATCCCAGCTGTCTTACCATCGTTCTCTCAAAATGTTTTT---GATGAGCAGTGCTCTAACTCACTTTTTACACCATCCCTAGGGACACCTAGAAGTGCCAGCTTCCCCAAAGCTCCTGAGCTCGGTGTTATCGCCACACCAGAAGAGCTTCCCCAACCCTCCAAAGAGCTTGACTTCAGCTACCTGCCCTTCCCTGCCAGGCCTGAGCCTTCCCTCCAAGCAGACCTGAGCAAAGACCTAGTGTGTTCTCCCCCCTACACACCCCACCAGCCAGGAGGCTGTGCTTTTCTCTTCAGCCTCCATGAACCCTTCCAAACTCAATTGCCCCCTCCATCCAGCTCTCTCCAAGAACAGTTGACTCCAAGTACAGTAACCTTTTCTGAACAGCTGACACCAAGTAGTATTACTTTCCCTGACCCCCTAACAAGTTCGCTGGAAGGACAGTCAACTGAAAGCTCAGCAAGATGTTTCAAAGACCAGTTGACTCCATGCACCTCTTCCTTCCCAGACCAGCTTCTTCCCAGCACTGCCACGTTCCCTGAACCTCTAGGCAGCCCTGCCCATGAGCAGCTGACTCCTCCTAGCACAGCGTTCCAGGCTCATCTGAATAGCCCTAGCCAGACTTTCCCAGAGCAACTAAGCCCCAATCCTACTCGGACTTATTTTGCCCAAGAGGGATGTAGTTTTCTCTATGAGAAACTGCCCCAAGGTTCAAGTAGCCCTGGTAATGGAGACTGCACACTCTTGGCCCTTGCTCAACTTCGAGGCCCCCTATCTGTGGATGTCCCACTTGTGCCTGAAGGTCTCCTTACACCTGAGGCATCTCCAGTTAAACGAAGCTTCTTTCACTACACAGAGAAAGAGCAAAATGAAATAGATGATCTGATCCAGCAGATTAGTCAATTAGCTCAGGGTGTAGACCGTTCCTTCTCAGCTGAGGCTGGCACTGGGGGATTAGAGCCACTTGGAGGATTGGGACCCCTTAACCCTAACCTATCTCTTTATGCGGCGGGCCCTTCAGTCCTAAGCCTGGATCTTAAACCCTGGAAATGCCAGGAACTTGACTCTCTAATTGACCCTGACAATTTATTCTTGGAAGAGATACCAGTGGAAGACATCTTTATGGAACTTTCCAGTCAGGACCCGAATGGTGAATGGGGTTCAGGGGATCCTGAGGCAGAAGTCCCAGGAGGGACTCTGTCACCTTGCAACAACCTTCCCCCGGAAGATCACAGCTTTCAGTCGGACTTGGCCACCTATGAGACTGCCTTTGAGACAAGTGTGTCAACATTTCCTTATGAAGGTTTTGCTGATGAGTTGCATCAACTTCAGAGCCAAGTTCAAGACACCTTCCATGAAggtactgataccctgacccctgagtatcatcccaatgacctcgactaaaac Alignment from CESAR tGACACGGAAGCCTGGAGCCTCCGCCAGCAGCTAAACTCTGAAGACACCCAGGCAGCCTATGTCCTAGGAACCCCAGCTGTGCTACCCTCATTCTCTGAGAATGTCTTCTCCCAGGAGCAATGCTCTAATCCACTCTTTACACCATCCCTGGGGACTCCTAGAAGTGCCAGCTTCCCCAGGGCTCCTGAACTAGGTGTGATCTCAACACCAGAAGAGCTTCCCCAACCCTCCAAAGAGCTGGACTTCAGTTACCTGCCATTCCCTGCTAGGCCTGAGCCTTCCCTCCAAGCAGACCTGAGCAAGGATTTGGTGTGTACTCCACCTTACACACCCCACCAGCCAGGAGGCTGTGCCTTCCTCTTCAGCCTCCATGAACCCTTCCAGACTCACTTGCCCCCTCCGTCCAGCTCTCTCCAAGAACAGCTGACACCAAGTACAGTGACTTTCTCTGAACAGTTGACACCCAGCAGTGCTACCTTCCCAGACCCACTAACCAGTTCACTACAAGGACAGTTGACAGAAAGCTCAGCCAGAAGCTTTGAAGACCAGTTGACTCCATGCACCTCTTCCTTCCCTGACCAGCTACTTCCCAGCACTGCCACATTCCCAGAGCCTCTGGGCAGCCCCGCCCATGAGCAGCTGACTCCTCCCAGCACAGCATTCCAGGCTCATCTGAACAGCCCCAGCCAAACCTTCCCAGAGCAACTGAGCCCCAATCCTACCAAGACTTACTTCGCCCAGGAGGGATGCAGTTTTCTCTATGAGAAGTTGCCCCCAAGTCCTAGCAGCCCTGGTAATGGGGACTGTACACTCCTGGCCCTAGCTCAGCTCCGGGGCCCCCTCTCTGTGGATGTCCCCCTGGTGCCCGAAGGCCTGCTCACACCTGAGGCCTCTCCAGTCAAGCAAAGTTTCTTCCACTACACAGAGAAAGAGCAAAATGAGATAGATCGTCTCATTCAGCAGATCAGCCAGTTGGCTCAGGGCGTGGACAGGCCCTTCTCAGCTGAGGCTGGCACTGGGGGGCTGGAGCCACTTGGAGGGCTGGAGCCCCTGAACCCTAACCTGTCCCTGTCAGGGGCTGGACCCCCTGTGCTTAGCCTGGATCTTAAACCCTGGAAATGCCAGGAGCTGGACTTCCTGGTTGACCCTGATAATTTATTCCTGGAAGAGACGCCAGTGGAAGACATCTTCATGGATCTTTCTACTCCAGACCCCAATGGGGAATGGGGTTCAGGGGATCCTGAGGCAGAGGTCCCAGGAGGGACCCTGTCACCTTGCAACAACCTGTCCCCAGAAGATCACAGCTTCCTGGAGGACTTGGCCACCTATGAAACCGCCTTTGAGACAGGTGTCTCAACATTCCCCTACGAAGGGTTTGCTGATGAGTTGCATCAACTCCAGAGCCAAGTTCAAGACAGCTTCCATGAAg aaaaaactgcaatggagccatcaatggaaatcacattttctgccttatagtGACATGGAAGCCTGGAGCCTCCGTCAACAGCTCAATACTGAAGACACCCAAACAGCCTACATTTTGGGAATCCCAGCTGTCTTACCATCGTTCTCTCAAAATGTTTTT---GATGAGCAGTGCTCTAACTCACTTTTTACACCATCCCTAGGGACACCTAGAAGTGCCAGCTTCCCCAAAGCTCCTGAGCTCGGTGTTATCGCCACACCAGAAGAGCTTCCCCAACCCTCCAAAGAGCTTGACTTCAGCTACCTGCCCTTCCCTGCCAGGCCTGAGCCTTCCCTCCAAGCAGACCTGAGCAAAGACCTAGTGTGTTCTCCCCCCTACACACCCCACCAGCCAGGAGGCTGTGCTTTTCTCTTCAGCCTCCATGAACCCTTCCAAACTCAATTGCCCCCTCCATCCAGCTCTCTCCAAGAACAGTTGACTCCAAGTACAGTAACCTTTTCTGAACAGCTGACACCAAGTAGTATTACTTTCCCTGACCCCCTAACAAGTTCGCTGGAAGGACAGTCAACTGAAAGCTCAGCAAGATGTTTCAAAGACCAGTTGACTCCATGCACCTCTTCCTTCCCAGACCAGCTTCTTCCCAGCACTGCCACGTTCCCTGAACCTCTAGGCAGCCCTGCCCATGAGCAGCTGACTCCTCCTAGCACAGCGTTCCAGGCTCATCTGAATAGCCCTAGCCAGACTTTCCCAGAGCAACTAAGCCCCAATCCTACTCGGACTTATTTTGCCCAAGAGGGATGTAGTTTTCTCTATGAGAAACTGCCCCAAGGTTCAAGTAGCCCTGGTAATGGAGACTGCACACTCTTGGCCCTTGCTCAACTTCGAGGCCCCCTATCTGTGGATGTCCCACTTGTGCCTGAAGGTCTCCTTACACCTGAGGCATCTCCAGTTAAACGAAGCTTCTTTCACTACACAGAGAAAGAGCAAAATGAAATAGATGATCTGATCCAGCAGATTAGTCAATTAGCTCAGGGTGTAGACCGTTCCTTCTCAGCTGAGGCTGGCACTGGGGGATTAGAGCCACTTGGAGGATTGGGACCCCTTAACCCTAACCTATCTCTTTATGCGGCGGGCCCTTCAGTCCTAAGCCTGGATCTTAAACCCTGGAAATGCCAGGAACTTGACTCTCTAATTGACCCTGACAATTTATTCTTGGAAGAGATACCAGTGGAAGACATCTTTATGGAACTTTCCAGTCAGGACCCGAATGGTGAATGGGGTTCAGGGGATCCTGAGGCAGAAGTCCCAGGAGGGACTCTGTCACCTTGCAACAACCTTCCCCCGGAAGATCACAGCTTTCAGTCGGACTTGGCCACCTATGAGACTGCCTTTGAGACAAGTGTGTCAACATTTCCTTATGAAGGTTTTGCTGATGAGTTGCATCAACTTCAGAGCCAAGTTCAAGACACCTTCCATGAAggtactgataccctgacccctgagtatcatcccaatgacctcgactaaaac Alignment from Spaln_aa2Genome TGACACGGAAGCCTGGAGCCTCCGCCAGCAGCTAAACTCTGAAGACACCCAGGCAGCCTATGTCCTAGGAACCCCAGCTGTGCTACCCTCATTCTCTGAGAATGTCTTCTCCCAGGAGCAATGCTCTAATCCACTCTTTACACCATCCCTGGGGACTCCTAGAAGTGCCAGCTTCCCCAGGGCTCCTGAACTAGGTGTGATCTCAACACCAGAAGAGCTTCCCCAACCCTCCAAAGAGCTGGACTTCAGTTACCTGCCATTCCCTGCTAGGCCTGAGCCTTCCCTCCAAGCAGACCTGAGCAAGGATTTGGTGTGTACTCCACCTTACACACCCCACCAGCCAGGAGGCTGTGCCTTCCTCTTCAGCCTCCATGAACCCTTCCAGACTCACTTGCCCCCTCCGTCCAGCTCTCTCCAAGAACAGCTGACACCAAGTACAGTGACTTTCTCTGAACAGTTGACACCCAGCAGTGCTACCTTCCCAGACCCACTAACCAGTTCACTACAAGGACAGTTGACAGAAAGCTCAGCCAGAAGCTTTGAAGACCAGTTGACTCCATGCACCTCTTCCTTCCCTGACCAGCTACTTCCCAGCACTGCCACATTCCCAGAGCCTCTGGGCAGCCCCGCCCATGAGCAGCTGACTCCTCCCAGCACAGCATTCCAGGCTCATCTGAACAGCCCCAGCCAAACCTTCCCAGAGCAACTGAGCCCCAATCCTACCAAGACTTACTTCGCCCAGGAGGGATGCAGTTTTCTCTATGAGAAGTTGCCCCCAAGTCCTAGCAGCCCTGGTAATGGGGACTGTACACTCCTGGCCCTAGCTCAGCTCCGGGGCCCCCTCTCTGTGGATGTCCCCCTGGTGCCCGAAGGCCTGCTCACACCTGAGGCCTCTCCAGTCAAGCAAAGTTTCTTCCACTACACAGAGAAAGAGCAAAATGAGATAGATCGTCTCATTCAGCAGATCAGCCAGTTGGCTCAGGGCGTGGACAGGCCCTTCTCAGCTGAGGCTGGCACTGGGGGGCTGGAGCCACTTGGAGGGCTGGAGCCCCTGAACCCTAACCTGTCCCTGTCAGGGGCTGGACCCCCTGTGCTTAGCCTGGATCTTAAACCCTGGAAATGCCAGGAGCTGGACTTCCTGGTTGACCCTGATAATTTATTCCTGGAAGAGACGCCAGTGGAAGACATCTTCATGGATCTTTCTACTCCAGACCCCAATGGGGAATGGGGTTCAGGGGATCCTGAGGCAGAGGTCCCAGGAGGGACCCTGTCACCTTGCAACAACCTGTCCCCAGAAGATCACAGCTTCCTGGAGGACTTGGCCACCTATGAAACCGCCTTTGAGACAGGTGTCTCAACATTCCCCTACGAAGGGTTTGCTGATGAGTTGCATCAACTCCAGAGCCAAGTTCAAGACAGCTTCCATGAAG aaaaaactgcaatggagccatcaatggaaatcacattttctgccttatagTGACATGGAAGCCTGGAGCCTCCGTCAACAGCTCAATACTGAAGACACCCAAACAGCCTACATTTTGGGAATCCCAGCTGTCTTACCATCGTTCTCTCAAAATGTTTTT---GATGAGCAGTGCTCTAACTCACTTTTTACACCATCCCTAGGGACACCTAGAAGTGCCAGCTTCCCCAAAGCTCCTGAGCTCGGTGTTATCGCCACACCAGAAGAGCTTCCCCAACCCTCCAAAGAGCTTGACTTCAGCTACCTGCCCTTCCCTGCCAGGCCTGAGCCTTCCCTCCAAGCAGACCTGAGCAAAGACCTAGTGTGTTCTCCCCCCTACACACCCCACCAGCCAGGAGGCTGTGCTTTTCTCTTCAGCCTCCATGAACCCTTCCAAACTCAATTGCCCCCTCCATCCAGCTCTCTCCAAGAACAGTTGACTCCAAGTACAGTAACCTTTTCTGAACAGCTGACACCAAGTAGTATTACTTTCCCTGACCCCCTAACAAGTTCGCTGGAAGGACAGTCAACTGAAAGCTCAGCAAGATGTTTCAAAGACCAGTTGACTCCATGCACCTCTTCCTTCCCAGACCAGCTTCTTCCCAGCACTGCCACGTTCCCTGAACCTCTAGGCAGCCCTGCCCATGAGCAGCTGACTCCTCCTAGCACAGCGTTCCAGGCTCATCTGAATAGCCCTAGCCAGACTTTCCCAGAGCAACTAAGCCCCAATCCTACTCGGACTTATTTTGCCCAAGAGGGATGTAGTTTTCTCTATGAGAAACTGCCCCAAGGTTCAAGTAGCCCTGGTAATGGAGACTGCACACTCTTGGCCCTTGCTCAACTTCGAGGCCCCCTATCTGTGGATGTCCCACTTGTGCCTGAAGGTCTCCTTACACCTGAGGCATCTCCAGTTAAACGAAGCTTCTTTCACTACACAGAGAAAGAGCAAAATGAAATAGATGATCTGATCCAGCAGATTAGTCAATTAGCTCAGGGTGTAGACCGTTCCTTCTCAGCTGAGGCTGGCACTGGGGGATTAGAGCCACTTGGAGGATTGGGACCCCTTAACCCTAACCTATCTCTTTATGCGGCGGGCCCTTCAGTCCTAAGCCTGGATCTTAAACCCTGGAAATGCCAGGAACTTGACTCTCTAATTGACCCTGACAATTTATTCTTGGAAGAGATACCAGTGGAAGACATCTTTATGGAACTTTCCAGTCAGGACCCGAATGGTGAATGGGGTTCAGGGGATCCTGAGGCAGAAGTCCCAGGAGGGACTCTGTCACCTTGCAACAACCTTCCCCCGGAAGATCACAGCTTTCAGTCGGACTTGGCCACCTATGAGACTGCCTTTGAGACAAGTGTGTCAACATTTCCTTATGAAGGTTTTGCTGATGAGTTGCATCAACTTCAGAGCCAAGTTCAAGACACCTTCCATGAAGgtactgataccctgacccctgagtatcatcccaatgacctcgactaaaac Alignment from Spaln_nt2Genome TGACACGGAAGCCTGGAGCCTCCGCCAGCAGCTAAACTCTGAAGACACCCAGGCAGCCTATGTCCTAGGAACCCCAGCTGTGCTACCCTCATTCTCTGAGAATGTCTTCTCCCAGGAGCAATGCTCTAATCCACTCTTTACACCATCCCTGGGGACTCCTAGAAGTGCCAGCTTCCCCAGGGCTCCTGAACTAGGTGTGATCTCAACACCAGAAGAGCTTCCCCAACCCTCCAAAGAGCTGGACTTCAGTTACCTGCCATTCCCTGCTAGGCCTGAGCCTTCCCTCCAAGCAGACCTGAGCAAGGATTTGGTGTGTACTCCACCTTACACACCCCACCAGCCAGGAGGCTGTGCCTTCCTCTTCAGCCTCCATGAACCCTTCCAGACTCACTTGCCCCCTCCGTCCAGCTCTCTCCAAGAACAGCTGACACCAAGTACAGTGACTTTCTCTGAACAGTTGACACCCAGCAGTGCTACCTTCCCAGACCCACTAACCAGTTCACTACAAGGACAGTTGACAGAAAGCTCAGCCAGAAGCTTTGAAGACCAGTTGACTCCATGCACCTCTTCCTTCCCTGACCAGCTACTTCCCAGCACTGCCACATTCCCAGAGCCTCTGGGCAGCCCCGCCCATGAGCAGCTGACTCCTCCCAGCACAGCATTCCAGGCTCATCTGAACAGCCCCAGCCAAACCTTCCCAGAGCAACTGAGCCCCAATCCTACCAAGACTTACTTCGCCCAGGAGGGATGCAGTTTTCTCTATGAGAAGTTGCCCCCAAGTCCTAGCAGCCCTGGTAATGGGGACTGTACACTCCTGGCCCTAGCTCAGCTCCGGGGCCCCCTCTCTGTGGATGTCCCCCTGGTGCCCGAAGGCCTGCTCACACCTGAGGCCTCTCCAGTCAAGCAAAGTTTCTTCCACTACACAGAGAAAGAGCAAAATGAGATAGATCGTCTCATTCAGCAGATCAGCCAGTTGGCTCAGGGCGTGGACAGGCCCTTCTCAGCTGAGGCTGGCACTGGGGGGCTGGAGCCACTTGGAGGGCTGGAGCCCCTGAACCCTAACCTGTCCCTGTCAGGGGCTGGACCCCCTGTGCTTAGCCTGGATCTTAAACCCTGGAAATGCCAGGAGCTGGACTTCCTGGTTGACCCTGATAATTTATTCCTGGAAGAGACGCCAGTGGAAGACATCTTCATGGATCTTTCTACTCCAGACCCCAATGGGGAATGGGGTTCAGGGGATCCTGAGGCAGAGGTCCCAGGAGGGACCCTGTCACCTTGCAACAACCTGTCCCCAGAAGATCACAGCTTCCTGGAGGACTTGGCCACCTATGAAACCGCCTTTGAGACAGGTGTCTCAACATTCCCCTACGAAGGGTTTGCTGATGAGTTGCATCAACTCCAGAGCCAAGTTCAAGACAGCTTCCATGAAG aaaaaactgcaatggagccatcaatggaaatcacattttctgccttatagTGACATGGAAGCCTGGAGCCTCCGTCAACAGCTCAATACTGAAGACACCCAAACAGCCTACATTTTGGGAATCCCAGCTGTCTTACCATCGTTCTCTCAAAATGTTTT---TGATGAGCAGTGCTCTAACTCACTTTTTACACCATCCCTAGGGACACCTAGAAGTGCCAGCTTCCCCAAAGCTCCTGAGCTCGGTGTTATCGCCACACCAGAAGAGCTTCCCCAACCCTCCAAAGAGCTTGACTTCAGCTACCTGCCCTTCCCTGCCAGGCCTGAGCCTTCCCTCCAAGCAGACCTGAGCAAAGACCTAGTGTGTTCTCCCCCCTACACACCCCACCAGCCAGGAGGCTGTGCTTTTCTCTTCAGCCTCCATGAACCCTTCCAAACTCAATTGCCCCCTCCATCCAGCTCTCTCCAAGAACAGTTGACTCCAAGTACAGTAACCTTTTCTGAACAGCTGACACCAAGTAGTATTACTTTCCCTGACCCCCTAACAAGTTCGCTGGAAGGACAGTCAACTGAAAGCTCAGCAAGATGTTTCAAAGACCAGTTGACTCCATGCACCTCTTCCTTCCCAGACCAGCTTCTTCCCAGCACTGCCACGTTCCCTGAACCTCTAGGCAGCCCTGCCCATGAGCAGCTGACTCCTCCTAGCACAGCGTTCCAGGCTCATCTGAATAGCCCTAGCCAGACTTTCCCAGAGCAACTAAGCCCCAATCCTACTCGGACTTATTTTGCCCAAGAGGGATGTAGTTTTCTCTATGAGAAACTGCCCCAAGGTTCAAGTAGCCCTGGTAATGGAGACTGCACACTCTTGGCCCTTGCTCAACTTCGAGGCCCCCTATCTGTGGATGTCCCACTTGTGCCTGAAGGTCTCCTTACACCTGAGGCATCTCCAGTTAAACGAAGCTTCTTTCACTACACAGAGAAAGAGCAAAATGAAATAGATGATCTGATCCAGCAGATTAGTCAATTAGCTCAGGGTGTAGACCGTTCCTTCTCAGCTGAGGCTGGCACTGGGGGATTAGAGCCACTTGGAGGATTGGGACCCCTTAACCCTAACCTATCTCTTTATGCGGCGGGCCCTTCAGTCCTAAGCCTGGATCTTAAACCCTGGAAATGCCAGGAACTTGACTCTCTAATTGACCCTGACAATTTATTCTTGGAAGAGATACCAGTGGAAGACATCTTTATGGAACTTTCCAGTCAGGACCCGAATGGTGAATGGGGTTCAGGGGATCCTGAGGCAGAAGTCCCAGGAGGGACTCTGTCACCTTGCAACAACCTTCCCCCGGAAGATCACAGCTTTCAGTCGGACTTGGCCACCTATGAGACTGCCTTTGAGACAAGTGTGTCAACATTTCCTTATGAAGGTTTTGCTGATGAGTTGCATCAACTTCAGAGCCAAGTTCAAGACACCTTCCATGAAGgtactgataccctgacccctgagtatcatcccaatgacctcgactaaaac Alignment from Pairagon TGACACGGAAGCCTGGAGCCTCCGCCAGCAGCTAAACTCTGAAGACACCCAGGCAGCCTATGTCCTAGGAACCCCAGCTGTGCTACCCTCATTCTCTGAGAATGTCTTCTCCCAGGAGCAATGCTCTAATCCACTCTTTACACCATCCCTGGGGACTCCTAGAAGTGCCAGCTTCCCCAGGGCTCCTGAACTAGGTGTGATCTCAACACCAGAAGAGCTTCCCCAACCCTCCAAAGAGCTGGACTTCAGTTACCTGCCATTCCCTGCTAGGCCTGAGCCTTCCCTCCAAGCAGACCTGAGCAAGGATTTGGTGTGTACTCCACCTTACACACCCCACCAGCCAGGAGGCTGTGCCTTCCTCTTCAGCCTCCATGAACCCTTCCAGACTCACTTGCCCCCTCCGTCCAGCTCTCTCCAAGAACAGCTGACACCAAGTACAGTGACTTTCTCTGAACAGTTGACACCCAGCAGTGCTACCTTCCCAGACCCACTAACCAGTTCACTACAAGGACAGTTGACAGAAAGCTCAGCCAGAAGCTTTGAAGACCAGTTGACTCCATGCACCTCTTCCTTCCCTGACCAGCTACTTCCCAGCACTGCCACATTCCCAGAGCCTCTGGGCAGCCCCGCCCATGAGCAGCTGACTCCTCCCAGCACAGCATTCCAGGCTCATCTGAACAGCCCCAGCCAAACCTTCCCAGAGCAACTGAGCCCCAATCCTACCAAGACTTACTTCGCCCAGGAGGGATGCAGTTTTCTCTATGAGAAGTTGCCCCCAAGTCCTAGCAGCCCTGGTAATGGGGACTGTACACTCCTGGCCCTAGCTCAGCTCCGGGGCCCCCTCTCTGTGGATGTCCCCCTGGTGCCCGAAGGCCTGCTCACACCTGAGGCCTCTCCAGTCAAGCAAAGTTTCTTCCACTACACAGAGAAAGAGCAAAATGAGATAGATCGTCTCATTCAGCAGATCAGCCAGTTGGCTCAGGGCGTGGACAGGCCCTTCTCAGCTGAGGCTGGCACTGGGGGGCTGGAGCCACTTGGAGGGCTGGAGCCCCTGAACCCTAACCTGTCCCTGTCAGGGGCTGGACCCCCTGTGCTTAGCCTGGATCTTAAACCCTGGAAATGCCAGGAGCTGGACTTCCTGGTTGACCCTGATAATTTATTCCTGGAAGAGACGCCAGTGGAAGACATCTTCATGGATCTTTCTACTCCAGACCCCAATGGGGAATGGGGTTCAGGGGATCCTGAGGCAGAGGTCCCAGGAGGGACCCTGTCACCTTGCAACAACCTGTCCCCAGAAGATCACAGCTTCCTGGAGGACTTGGCCACCTATGAAACCGCCTTTGAGACAGGTGTCTCAACATTCCCCTACGAAGGGTTTGCTGATGAGTTGCATCAACTCCAGAGCCAAGTTCAAGACAGCTTCCATGAAG aaaaaactgcaatggagccatcaatggaaatcacattttctgccttatagTGACATGGAAGCCTGGAGCCTCCGTCAACAGCTCAATACTGAAGACACCCAAACAGCCTACATTTTGGGAATCCCAGCTGTCTTACCATCGTTCTCTCAAAATGTTTT---TGATGAGCAGTGCTCTAACTCACTTTTTACACCATCCCTAGGGACACCTAGAAGTGCCAGCTTCCCCAAAGCTCCTGAGCTCGGTGTTATCGCCACACCAGAAGAGCTTCCCCAACCCTCCAAAGAGCTTGACTTCAGCTACCTGCCCTTCCCTGCCAGGCCTGAGCCTTCCCTCCAAGCAGACCTGAGCAAAGACCTAGTGTGTTCTCCCCCCTACACACCCCACCAGCCAGGAGGCTGTGCTTTTCTCTTCAGCCTCCATGAACCCTTCCAAACTCAATTGCCCCCTCCATCCAGCTCTCTCCAAGAACAGTTGACTCCAAGTACAGTAACCTTTTCTGAACAGCTGACACCAAGTAGTATTACTTTCCCTGACCCCCTAACAAGTTCGCTGGAAGGACAGTCAACTGAAAGCTCAGCAAGATGTTTCAAAGACCAGTTGACTCCATGCACCTCTTCCTTCCCAGACCAGCTTCTTCCCAGCACTGCCACGTTCCCTGAACCTCTAGGCAGCCCTGCCCATGAGCAGCTGACTCCTCCTAGCACAGCGTTCCAGGCTCATCTGAATAGCCCTAGCCAGACTTTCCCAGAGCAACTAAGCCCCAATCCTACTCGGACTTATTTTGCCCAAGAGGGATGTAGTTTTCTCTATGAGAAACTGCCCCAAGGTTCAAGTAGCCCTGGTAATGGAGACTGCACACTCTTGGCCCTTGCTCAACTTCGAGGCCCCCTATCTGTGGATGTCCCACTTGTGCCTGAAGGTCTCCTTACACCTGAGGCATCTCCAGTTAAACGAAGCTTCTTTCACTACACAGAGAAAGAGCAAAATGAAATAGATGATCTGATCCAGCAGATTAGTCAATTAGCTCAGGGTGTAGACCGTTCCTTCTCAGCTGAGGCTGGCACTGGGGGATTAGAGCCACTTGGAGGATTGGGACCCCTTAACCCTAACCTATCTCTTTATGCGGCGGGCCCTTCAGTCCTAAGCCTGGATCTTAAACCCTGGAAATGCCAGGAACTTGACTCTCTAATTGACCCTGACAATTTATTCTTGGAAGAGATACCAGTGGAAGACATCTTTATGGAACTTTCCAGTCAGGACCCGAATGGTGAATGGGGTTCAGGGGATCCTGAGGCAGAAGTCCCAGGAGGGACTCTGTCACCTTGCAACAACCTTCCCCCGGAAGATCACAGCTTTCAGTCGGACTTGGCCACCTATGAGACTGCCTTTGAGACAAGTGTGTCAACATTTCCTTATGAAGGTTTTGCTGATGAGTTGCATCAACTTCAGAGCCAAGTTCAAGACACCTTCCATGAAGgtactgataccctgacccctgagtatcatcccaatgacctcgactaaaac Alignment from Exonerate_protein2genome TGACACGGAAGCCTGGAGCCTCCGCCAGCAGCTAAACTCTGAAGACACCCAGGCAGCCTATGTCCTAGGAACCCCAGCTGTGCTACCCTCATTCTCTGAGAATGTCTTCTCCCAGGAGCAATGCTCTAATCCACTCTTTACACCATCCCTGGGGACTCCTAGAAGTGCCAGCTTCCCCAGGGCTCCTGAACTAGGTGTGATCTCAACACCAGAAGAGCTTCCCCAACCCTCCAAAGAGCTGGACTTCAGTTACCTGCCATTCCCTGCTAGGCCTGAGCCTTCCCTCCAAGCAGACCTGAGCAAGGATTTGGTGTGTACTCCACCTTACACACCCCACCAGCCAGGAGGCTGTGCCTTCCTCTTCAGCCTCCATGAACCCTTCCAGACTCACTTGCCCCCTCCGTCCAGCTCTCTCCAAGAACAGCTGACACCAAGTACAGTGACTTTCTCTGAACAGTTGACACCCAGCAGTGCTACCTTCCCAGACCCACTAACCAGTTCACTACAAGGACAGTTGACAGAAAGCTCAGCCAGAAGCTTTGAAGACCAGTTGACTCCATGCACCTCTTCCTTCCCTGACCAGCTACTTCCCAGCACTGCCACATTCCCAGAGCCTCTGGGCAGCCCCGCCCATGAGCAGCTGACTCCTCCCAGCACAGCATTCCAGGCTCATCTGAACAGCCCCAGCCAAACCTTCCCAGAGCAACTGAGCCCCAATCCTACCAAGACTTACTTCGCCCAGGAGGGATGCAGTTTTCTCTATGAGAAGTTGCCCCCAAGTCCTAGCAGCCCTGGTAATGGGGACTGTACACTCCTGGCCCTAGCTCAGCTCCGGGGCCCCCTCTCTGTGGATGTCCCCCTGGTGCCCGAAGGCCTGCTCACACCTGAGGCCTCTCCAGTCAAGCAAAGTTTCTTCCACTACACAGAGAAAGAGCAAAATGAGATAGATCGTCTCATTCAGCAGATCAGCCAGTTGGCTCAGGGCGTGGACAGGCCCTTCTCAGCTGAGGCTGGCACTGGGGGGCTGGAGCCACTTGGAGGGCTGGAGCCCCTGAACCCTAACCTGTCCCTGTCAGGGGCTGGACCCCCTGTGCTTAGCCTGGATCTTAAACCCTGGAAATGCCAGGAGCTGGACTTCCTGGTTGACCCTGATAATTTATTCCTGGAAGAGACGCCAGTGGAAGACATCTTCATGGATCTTTCTACTCCAGACCCCAATGGGGAATGGGGTTCAGGGGATCCTGAGGCAGAGGTCCCAGGAGGGACCCTGTCACCTTGCAACAACCTGTCCCCAGAAGATCACAGCTTCCTGGAGGACTTGGCCACCTATGAAACCGCCTTTGAGACAGGTGTCTCAACATTCCCCTACGAAGGGTTTGCTGATGAGTTGCATCAACTCCAGAGCCAAGTTCAAGACAGCTTCCATGAAG aaaaaactgcaatggagccatcaatggaaatcacattttctgccttatagTGACATGGAAGCCTGGAGCCTCCGTCAACAGCTCAATACTGAAGACACCCAAACAGCCTACATTTTGGGAATCCCAGCTGTCTTACCATCGTTCTCTCAAAATGTTTTT---GATGAGCAGTGCTCTAACTCACTTTTTACACCATCCCTAGGGACACCTAGAAGTGCCAGCTTCCCCAAAGCTCCTGAGCTCGGTGTTATCGCCACACCAGAAGAGCTTCCCCAACCCTCCAAAGAGCTTGACTTCAGCTACCTGCCCTTCCCTGCCAGGCCTGAGCCTTCCCTCCAAGCAGACCTGAGCAAAGACCTAGTGTGTTCTCCCCCCTACACACCCCACCAGCCAGGAGGCTGTGCTTTTCTCTTCAGCCTCCATGAACCCTTCCAAACTCAATTGCCCCCTCCATCCAGCTCTCTCCAAGAACAGTTGACTCCAAGTACAGTAACCTTTTCTGAACAGCTGACACCAAGTAGTATTACTTTCCCTGACCCCCTAACAAGTTCGCTGGAAGGACAGTCAACTGAAAGCTCAGCAAGATGTTTCAAAGACCAGTTGACTCCATGCACCTCTTCCTTCCCAGACCAGCTTCTTCCCAGCACTGCCACGTTCCCTGAACCTCTAGGCAGCCCTGCCCATGAGCAGCTGACTCCTCCTAGCACAGCGTTCCAGGCTCATCTGAATAGCCCTAGCCAGACTTTCCCAGAGCAACTAAGCCCCAATCCTACTCGGACTTATTTTGCCCAAGAGGGATGTAGTTTTCTCTATGAGAAACTGCCCCAAGGTTCAAGTAGCCCTGGTAATGGAGACTGCACACTCTTGGCCCTTGCTCAACTTCGAGGCCCCCTATCTGTGGATGTCCCACTTGTGCCTGAAGGTCTCCTTACACCTGAGGCATCTCCAGTTAAACGAAGCTTCTTTCACTACACAGAGAAAGAGCAAAATGAAATAGATGATCTGATCCAGCAGATTAGTCAATTAGCTCAGGGTGTAGACCGTTCCTTCTCAGCTGAGGCTGGCACTGGGGGATTAGAGCCACTTGGAGGATTGGGACCCCTTAACCCTAACCTATCTCTTTATGCGGCGGGCCCTTCAGTCCTAAGCCTGGATCTTAAACCCTGGAAATGCCAGGAACTTGACTCTCTAATTGACCCTGACAATTTATTCTTGGAAGAGATACCAGTGGAAGACATCTTTATGGAACTTTCCAGTCAGGACCCGAATGGTGAATGGGGTTCAGGGGATCCTGAGGCAGAAGTCCCAGGAGGGACTCTGTCACCTTGCAACAACCTTCCCCCGGAAGATCACAGCTTTCAGTCGGACTTGGCCACCTATGAGACTGCCTTTGAGACAAGTGTGTCAACATTTCCTTATGAAGGTTTTGCTGATGAGTTGCATCAACTTCAGAGCCAAGTTCAAGACACCTTCCATGAAGgtactgataccctgacccctgagtatcatcccaatgacctcgactaaaac Alignment from Exonerate_coding2genome TGACACGGAAGCCTGGAGCCTCCGCCAGCAGCTAAACTCTGAAGACACCCAGGCAGCCTATGTCCTAGGAACCCCAGCTGTGCTACCCTCATTCTCTGAGAATGTCTTCTCCCAGGAGCAATGCTCTAATCCACTCTTTACACCATCCCTGGGGACTCCTAGAAGTGCCAGCTTCCCCAGGGCTCCTGAACTAGGTGTGATCTCAACACCAGAAGAGCTTCCCCAACCCTCCAAAGAGCTGGACTTCAGTTACCTGCCATTCCCTGCTAGGCCTGAGCCTTCCCTCCAAGCAGACCTGAGCAAGGATTTGGTGTGTACTCCACCTTACACACCCCACCAGCCAGGAGGCTGTGCCTTCCTCTTCAGCCTCCATGAACCCTTCCAGACTCACTTGCCCCCTCCGTCCAGCTCTCTCCAAGAACAGCTGACACCAAGTACAGTGACTTTCTCTGAACAGTTGACACCCAGCAGTGCTACCTTCCCAGACCCACTAACCAGTTCACTACAAGGACAGTTGACAGAAAGCTCAGCCAGAAGCTTTGAAGACCAGTTGACTCCATGCACCTCTTCCTTCCCTGACCAGCTACTTCCCAGCACTGCCACATTCCCAGAGCCTCTGGGCAGCCCCGCCCATGAGCAGCTGACTCCTCCCAGCACAGCATTCCAGGCTCATCTGAACAGCCCCAGCCAAACCTTCCCAGAGCAACTGAGCCCCAATCCTACCAAGACTTACTTCGCCCAGGAGGGATGCAGTTTTCTCTATGAGAAGTTGCCCCCAAGTCCTAGCAGCCCTGGTAATGGGGACTGTACACTCCTGGCCCTAGCTCAGCTCCGGGGCCCCCTCTCTGTGGATGTCCCCCTGGTGCCCGAAGGCCTGCTCACACCTGAGGCCTCTCCAGTCAAGCAAAGTTTCTTCCACTACACAGAGAAAGAGCAAAATGAGATAGATCGTCTCATTCAGCAGATCAGCCAGTTGGCTCAGGGCGTGGACAGGCCCTTCTCAGCTGAGGCTGGCACTGGGGGGCTGGAGCCACTTGGAGGGCTGGAGCCCCTGAACCCTAACCTGTCCCTGTCAGGGGCTGGACCCCCTGTGCTTAGCCTGGATCTTAAACCCTGGAAATGCCAGGAGCTGGACTTCCTGGTTGACCCTGATAATTTATTCCTGGAAGAGACGCCAGTGGAAGACATCTTCATGGATCTTTCTACTCCAGACCCCAATGGGGAATGGGGTTCAGGGGATCCTGAGGCAGAGGTCCCAGGAGGGACCCTGTCACCTTGCAACAACCTGTCCCCAGAAGATCACAGCTTCCTGGAGGACTTGGCCACCTATGAAACCGCCTTTGAGACAGGTGTCTCAACATTCCCCTACGAAGGGTTTGCTGATGAGTTGCATCAACTCCAGAGCCAAGTTCAAGACAGCTTCCATGAAG aaaaaactgcaatggagccatcaatggaaatcacattttctgccttatagTGACATGGAAGCCTGGAGCCTCCGTCAACAGCTCAATACTGAAGACACCCAAACAGCCTACATTTTGGGAATCCCAGCTGTCTTACCATCGTTCTCTCAAAATGTTTTT---GATGAGCAGTGCTCTAACTCACTTTTTACACCATCCCTAGGGACACCTAGAAGTGCCAGCTTCCCCAAAGCTCCTGAGCTCGGTGTTATCGCCACACCAGAAGAGCTTCCCCAACCCTCCAAAGAGCTTGACTTCAGCTACCTGCCCTTCCCTGCCAGGCCTGAGCCTTCCCTCCAAGCAGACCTGAGCAAAGACCTAGTGTGTTCTCCCCCCTACACACCCCACCAGCCAGGAGGCTGTGCTTTTCTCTTCAGCCTCCATGAACCCTTCCAAACTCAATTGCCCCCTCCATCCAGCTCTCTCCAAGAACAGTTGACTCCAAGTACAGTAACCTTTTCTGAACAGCTGACACCAAGTAGTATTACTTTCCCTGACCCCCTAACAAGTTCGCTGGAAGGACAGTCAACTGAAAGCTCAGCAAGATGTTTCAAAGACCAGTTGACTCCATGCACCTCTTCCTTCCCAGACCAGCTTCTTCCCAGCACTGCCACGTTCCCTGAACCTCTAGGCAGCCCTGCCCATGAGCAGCTGACTCCTCCTAGCACAGCGTTCCAGGCTCATCTGAATAGCCCTAGCCAGACTTTCCCAGAGCAACTAAGCCCCAATCCTACTCGGACTTATTTTGCCCAAGAGGGATGTAGTTTTCTCTATGAGAAACTGCCCCAAGGTTCAAGTAGCCCTGGTAATGGAGACTGCACACTCTTGGCCCTTGCTCAACTTCGAGGCCCCCTATCTGTGGATGTCCCACTTGTGCCTGAAGGTCTCCTTACACCTGAGGCATCTCCAGTTAAACGAAGCTTCTTTCACTACACAGAGAAAGAGCAAAATGAAATAGATGATCTGATCCAGCAGATTAGTCAATTAGCTCAGGGTGTAGACCGTTCCTTCTCAGCTGAGGCTGGCACTGGGGGATTAGAGCCACTTGGAGGATTGGGACCCCTTAACCCTAACCTATCTCTTTATGCGGCGGGCCCTTCAGTCCTAAGCCTGGATCTTAAACCCTGGAAATGCCAGGAACTTGACTCTCTAATTGACCCTGACAATTTATTCTTGGAAGAGATACCAGTGGAAGACATCTTTATGGAACTTTCCAGTCAGGACCCGAATGGTGAATGGGGTTCAGGGGATCCTGAGGCAGAAGTCCCAGGAGGGACTCTGTCACCTTGCAACAACCTTCCCCCGGAAGATCACAGCTTTCAGTCGGACTTGGCCACCTATGAGACTGCCTTTGAGACAAGTGTGTCAACATTTCCTTATGAAGGTTTTGCTGATGAGTTGCATCAACTTCAGAGCCAAGTTCAAGACACCTTCCATGAAGgtactgataccctgacccctgagtatcatcccaatgacctcgactaaaac Alignment from GeneWise TGACACGGAAGCCTGGAGCCTCCGCCAGCAGCTAAACTCTGAAGACACCCAGGCAGCCTATGTCCTAGGAACCCCAGCTGTGCTACCCTCATTCTCTGAGAATGTCTTCTCCCAGGAGCAATGCTCTAATCCACTCTTTACACCATCCCTGGGGACTCCTAGAAGTGCCAGCTTCCCCAGGGCTCCTGAACTAGGTGTGATCTCAACACCAGAAGAGCTTCCCCAACCCTCCAAAGAGCTGGACTTCAGTTACCTGCCATTCCCTGCTAGGCCTGAGCCTTCCCTCCAAGCAGACCTGAGCAAGGATTTGGTGTGTACTCCACCTTACACACCCCACCAGCCAGGAGGCTGTGCCTTCCTCTTCAGCCTCCATGAACCCTTCCAGACTCACTTGCCCCCTCCGTCCAGCTCTCTCCAAGAACAGCTGACACCAAGTACAGTGACTTTCTCTGAACAGTTGACACCCAGCAGTGCTACCTTCCCAGACCCACTAACCAGTTCACTACAAGGACAGTTGACAGAAAGCTCAGCCAGAAGCTTTGAAGACCAGTTGACTCCATGCACCTCTTCCTTCCCTGACCAGCTACTTCCCAGCACTGCCACATTCCCAGAGCCTCTGGGCAGCCCCGCCCATGAGCAGCTGACTCCTCCCAGCACAGCATTCCAGGCTCATCTGAACAGCCCCAGCCAAACCTTCCCAGAGCAACTGAGCCCCAATCCTACCAAGACTTACTTCGCCCAGGAGGGATGCAGTTTTCTCTATGAGAAGTTGCCCCCAAGTCCTAGCAGCCCTGGTAATGGGGACTGTACACTCCTGGCCCTAGCTCAGCTCCGGGGCCCCCTCTCTGTGGATGTCCCCCTGGTGCCCGAAGGCCTGCTCACACCTGAGGCCTCTCCAGTCAAGCAAAGTTTCTTCCACTACACAGAGAAAGAGCAAAATGAGATAGATCGTCTCATTCAGCAGATCAGCCAGTTGGCTCAGGGCGTGGACAGGCCCTTCTCAGCTGAGGCTGGCACTGGGGGGCTGGAGCCACTTGGAGGGCTGGAGCCCCTGAACCCTAACCTGTCCCTGTCAGGGGCTGGACCCCCTGTGCTTAGCCTGGATCTTAAACCCTGGAAATGCCAGGAGCTGGACTTCCTGGTTGACCCTGATAATTTATTCCTGGAAGAGACGCCAGTGGAAGACATCTTCATGGATCTTTCTACTCCAGACCCCAATGGGGAATGGGGTTCAGGGGATCCTGAGGCAGAGGTCCCAGGAGGGACCCTGTCACCTTGCAACAACCTGTCCCCAGAAGATCACAGCTTCCTGGAGGACTTGGCCACCTATGAAACCGCCTTTGAGACAGGTGTCTCAACATTCCCCTACGAAGGGTTTGCTGATGAGTTGCATCAACTCCAGAGCCAAGTTCAAGACAGCTTCCATGAAGATGGAAGTGGAGGGGAACCAACGTTT aaaaaactgcaatggagccatcaatggaaatcacattttctgccttatagTGACATGGAAGCCTGGAGCCTCCGTCAACAGCTCAATACTGAAGACACCCAAACAGCCTACATTTTGGGAATCCCAGCTGTCTTACCATCGTTCTCTCAAAATGTTTTT---GATGAGCAGTGCTCTAACTCACTTTTTACACCATCCCTAGGGACACCTAGAAGTGCCAGCTTCCCCAAAGCTCCTGAGCTCGGTGTTATCGCCACACCAGAAGAGCTTCCCCAACCCTCCAAAGAGCTTGACTTCAGCTACCTGCCCTTCCCTGCCAGGCCTGAGCCTTCCCTCCAAGCAGACCTGAGCAAAGACCTAGTGTGTTCTCCCCCCTACACACCCCACCAGCCAGGAGGCTGTGCTTTTCTCTTCAGCCTCCATGAACCCTTCCAAACTCAATTGCCCCCTCCATCCAGCTCTCTCCAAGAACAGTTGACTCCAAGTACAGTAACCTTTTCTGAACAGCTGACACCAAGTAGTATTACTTTCCCTGACCCCCTAACAAGTTCGCTGGAAGGACAGTCAACTGAAAGCTCAGCAAGATGTTTCAAAGACCAGTTGACTCCATGCACCTCTTCCTTCCCAGACCAGCTTCTTCCCAGCACTGCCACGTTCCCTGAACCTCTAGGCAGCCCTGCCCATGAGCAGCTGACTCCTCCTAGCACAGCGTTCCAGGCTCATCTGAATAGCCCTAGCCAGACTTTCCCAGAGCAACTAAGCCCCAATCCTACTCGGACTTATTTTGCCCAAGAGGGATGTAGTTTTCTCTATGAGAAACTGCCCCAAGGTTCAAGTAGCCCTGGTAATGGAGACTGCACACTCTTGGCCCTTGCTCAACTTCGAGGCCCCCTATCTGTGGATGTCCCACTTGTGCCTGAAGGTCTCCTTACACCTGAGGCATCTCCAGTTAAACGAAGCTTCTTTCACTACACAGAGAAAGAGCAAAATGAAATAGATGATCTGATCCAGCAGATTAGTCAATTAGCTCAGGGTGTAGACCGTTCCTTCTCAGCTGAGGCTGGCACTGGGGGATTAGAGCCACTTGGAGGATTGGGACCCCTTAACCCTAACCTATCTCTTTATGCGGCGGGCCCTTCAGTCCTAAGCCTGGATCTTAAACCCTGGAAATGCCAGGAACTTGACTCTCTAATTGACCCTGACAATTTATTCTTGGAAGAGATACCAGTGGAAGACATCTTTATGGAACTTTCCAGTCAGGACCCGAATGGTGAATGGGGTTCAGGGGATCCTGAGGCAGAAGTCCCAGGAGGGACTCTGTCACCTTGCAACAACCTTCCCCCGGAAGATCACAGCTTTCAGTCGGACTTGGCCACCTATGAGACTGCCTTTGAGACAAGTGTGTCAACATTTCCTTATGAAGGTTTTGCTGATGAGTTGCATCAACTTCAGAGCCAAGTTCAAGACACCTTCCATGAAGGTACTGATACCCTGACCCCTGAGTATcatcccaatgacctcgactaaaac #### Nrxn2_ID1733_2 --> 2 - 1 Original Alignment agGAACACCCCATGGAAg aaggggtgggcatttatcctgctgtcctatttctcctttgttttcaccagaaGAACACCCCATGGAGggtaagtgtgccctccttccatcaatgtctttcatagatctccatgtgatc Alignment from CESAR agGAACACCCCATGGAAg aaggggtgggcatttatcctgctgtcctatttctcctttgttttcaccagaaGAACACCCCATGGAGggtaagtgtgccctccttccatcaatgtctttcatagatctccatgtgatc Alignment from Spaln_aa2Genome AGGAACACCCCATGGAAG aaggggtgggcatttatcctgctgtcctatttctcctttgttttcaccagAAGAACACCCCATGGAGGgtaagtgtgccctccttccatcaatgtctttcatagatctccatgtgatc Alignment from Spaln_nt2Genome AGGAACACCCCATGGAAG aaggggtgggcatttatcctgctgtcctatttctcctttgttttcaccagAAGAACACCCCATGGAGGgtaagtgtgccctccttccatcaatgtctttcatagatctccatgtgatc Alignment from Pairagon AGGAACACCCCATGGAAG aaggggtgggcatttatcctgctgtcctatttctcctttgttttcaccagAAGAACACCCCATGGAGGgtaagtgtgccctccttccatcaatgtctttcatagatctccatgtgatc Alignment from Exonerate_protein2genome AGGAACACCCCATGGAAG aaggggtgggcatttatcctgctgtcctatttctcctttgttttcaccagAAGAACACCCCATGGAGGgtaagtgtgccctccttccatcaatgtctttcatagatctccatgtgatc Alignment from Exonerate_coding2genome aaggggtgggcatttatcctgctgtcctatttctcctttgttttcaccagaagaacaccccatggagggtaagtgtgccctccttccatcaatgtctttcatagatctccatgtgatc Alignment from GeneWise aaggggtgggcatttatcctgctgtcctatttctcctttgttttcaccagaagaacaccccatggagggtaagtgtgccctccttccatcaatgtctttcatagatctccatgtgatc #### Nrxn2_ID1763_14 --> 1 - 1 Original Alignment gTACATCCACTACGTGTTTGACCTGGGAAATGGCCCGTCCTTGATGAAGGGAAACTCAGACAAACCAGTCAATGACAACCAATGGCACAATGTGGTGGTGTCCAGGGACCCAGGCAACGTGCACACACTGAAGATCGACTCCCGCACAGTCACGCAGCATTCCAACGGTGCCCGAAATCTGGATCTCAAAg agccctgtgttacttatagtcacctgtgtaaatgaacctgtgcttcccaggTACCTCCACTATGTGTTTGACCTGGGAAATGGTCAGTCCTTAATGAAGGGAAACTCAGACAAGCCAGTCAATGACAATCAATGGCACAATGTGGTGGTGTCCAGGGATCCAGGAAATGTGCATACTTTGAAGATTGACTCCCGCACAGTTACACAGCATTCCAATGGTGCTCGAAATCTGGAGCTCAAGggtaagtttgtaacccctgccttgcaaagcctctctggagatcactccctt Alignment from CESAR gTACATCCACTACGTGTTTGACCTGGGAAATGGCCCGTCCTTGATGAAGGGAAACTCAGACAAACCAGTCAATGACAACCAATGGCACAATGTGGTGGTGTCCAGGGACCCAGGCAACGTGCACACACTGAAGATCGACTCCCGCACAGTCACGCAGCATTCCAACGGTGCCCGAAATCTGGATCTCAAAg agccctgtgttacttatagtcacctgtgtaaatgaacctgtgcttcccaggTACCTCCACTATGTGTTTGACCTGGGAAATGGTCAGTCCTTAATGAAGGGAAACTCAGACAAGCCAGTCAATGACAATCAATGGCACAATGTGGTGGTGTCCAGGGATCCAGGAAATGTGCATACTTTGAAGATTGACTCCCGCACAGTTACACAGCATTCCAATGGTGCTCGAAATCTGGAGCTCAAGggtaagtttgtaacccctgccttgcaaagcctctctggagatcactccctt Alignment from Spaln_aa2Genome GTACATCCACTACGTGTTTGACCTGGGAAATGGCCCGTCCTTGATGAAGGGAAACTCAGACAAACCAGTCAATGACAACCAATGGCACAATGTGGTGGTGTCCAGGGACCCAGGCAACGTGCACACACTGAAGATCGACTCCCGCACAGTCACGCAGCATTCCAACGGTGCCCGAAATCTGGATCTCAAAG agccctgtgttacttatagtcacctgtgtaaatgaacctgtgcttcccagGTACCTCCACTATGTGTTTGACCTGGGAAATGGTCAGTCCTTAATGAAGGGAAACTCAGACAAGCCAGTCAATGACAATCAATGGCACAATGTGGTGGTGTCCAGGGATCCAGGAAATGTGCATACTTTGAAGATTGACTCCCGCACAGTTACACAGCATTCCAATGGTGCTCGAAATCTGGAGCTCAAGGgtaagtttgtaacccctgccttgcaaagcctctctggagatcactccctt Alignment from Spaln_nt2Genome GTACATCCACTACGTGTTTGACCTGGGAAATGGCCCGTCCTTGATGAAGGGAAACTCAGACAAACCAGTCAATGACAACCAATGGCACAATGTGGTGGTGTCCAGGGACCCAGGCAACGTGCACACACTGAAGATCGACTCCCGCACAGTCACGCAGCATTCCAACGGTGCCCGAAATCTGGATCTCAAAG agccctgtgttacttatagtcacctgtgtaaatgaacctgtgcttcccagGTACCTCCACTATGTGTTTGACCTGGGAAATGGTCAGTCCTTAATGAAGGGAAACTCAGACAAGCCAGTCAATGACAATCAATGGCACAATGTGGTGGTGTCCAGGGATCCAGGAAATGTGCATACTTTGAAGATTGACTCCCGCACAGTTACACAGCATTCCAATGGTGCTCGAAATCTGGAGCTCAAGGgtaagtttgtaacccctgccttgcaaagcctctctggagatcactccctt Alignment from Pairagon GTACATCCACTACGTGTTTGACCTGGGAAATGGCCCGTCCTTGATGAAGGGAAACTCAGACAAACCAGTCAATGACAACCAATGGCACAATGTGGTGGTGTCCAGGGACCCAGGCAACGTGCACACACTGAAGATCGACTCCCGCACAGTCACGCAGCATTCCAACGGTGCCCGAAATCTGGATCTCAAAG agccctgtgttacttatagtcacctgtgtaaatgaacctgtgcttcccagGTACCTCCACTATGTGTTTGACCTGGGAAATGGTCAGTCCTTAATGAAGGGAAACTCAGACAAGCCAGTCAATGACAATCAATGGCACAATGTGGTGGTGTCCAGGGATCCAGGAAATGTGCATACTTTGAAGATTGACTCCCGCACAGTTACACAGCATTCCAATGGTGCTCGAAATCTGGAGCTCAAGGgtaagtttgtaacccctgccttgcaaagcctctctggagatcactccctt Alignment from Exonerate_protein2genome GTACATCCACTACGTGTTTGACCTGGGAAATGGCCCGTCCTTGATGAAGGGAAACTCAGACAAACCAGTCAATGACAACCAATGGCACAATGTGGTGGTGTCCAGGGACCCAGGCAACGTGCACACACTGAAGATCGACTCCCGCACAGTCACGCAGCATTCCAACGGTGCCCGAAATCTGGATCTCAAAG agccctgtgttacttatagtcacctgtgtaaatgaacctgtgcttcccagGTACCTCCACTATGTGTTTGACCTGGGAAATGGTCAGTCCTTAATGAAGGGAAACTCAGACAAGCCAGTCAATGACAATCAATGGCACAATGTGGTGGTGTCCAGGGATCCAGGAAATGTGCATACTTTGAAGATTGACTCCCGCACAGTTACACAGCATTCCAATGGTGCTCGAAATCTGGAGCTCAAGGgtaagtttgtaacccctgccttgcaaagcctctctggagatcactccctt Alignment from Exonerate_coding2genome GTACATCCACTACGTGTTTGACCTGGGAAATGGCCCGTCCTTGATGAAGGGAAACTCAGACAAACCAGTCAATGACAACCAATGGCACAATGTGGTGGTGTCCAGGGACCCAGGCAACGTGCACACACTGAAGATCGACTCCCGCACAGTCACGCAGCATTCCAACGGTGCCCGAAATCTGGATCTCAAAG agccctgtgttacttatagtcacctgtgtaaatgaacctgtgcttcccagGTACCTCCACTATGTGTTTGACCTGGGAAATGGTCAGTCCTTAATGAAGGGAAACTCAGACAAGCCAGTCAATGACAATCAATGGCACAATGTGGTGGTGTCCAGGGATCCAGGAAATGTGCATACTTTGAAGATTGACTCCCGCACAGTTACACAGCATTCCAATGGTGCTCGAAATCTGGAGCTCAAGGgtaagtttgtaacccctgccttgcaaagcctctctggagatcactccctt Alignment from GeneWise GTACATCCACTACGTGTTTGACCTGGGAAATGGCCCGTCCTTGATGAAGGGAAACTCAGACAAACCAGTCAATGACAACCAATGGCACAATGTGGTGGTGTCCAGGGACCCAGGCAACGTGCACACACTGAAGATCGACTCCCGCACAGTCACGCAGCATTCCAACGGTGCCCGAAATCTGGATCTCAAAG agccctgtgttacttatagtcacctgtgtaaatgaacctgtgcttcccagGTACCTCCACTATGTGTTTGACCTGGGAAATGGTCAGTCCTTAATGAAGGGAAACTCAGACAAGCCAGTCAATGACAATCAATGGCACAATGTGGTGGTGTCCAGGGATCCAGGAAATGTGCATACTTTGAAGATTGACTCCCGCACAGTTACACAGCATTCCAATGGTGCTCGAAATCTGGAGCTCAAGGgtaagtttgtaacccctgccttgcaaagcctctctggagatcactccctt #### Nrxn2_ID1766_16 --> 2 - 1 Original Alignment gcCCTAGCACCACCTGCACCGAAGAGTCTTGTGCCAACCAGGGCGTCTGTCTGCAGCAGTGGGATGGTTTTACCTGTGACTGTACTATGACTTCCTATGGAGGCCCTGTCTGCAATGACc acaaaagacggtccatcaagctagacctctgtcaactgtcttcccctcaggcCCTAGCACTAACTGCACTGAGGAGTCTTGTGCCAACCAGGGTGTCTGTTTGCAGCAGTGGGATGGTTTTACATGTGACTGTACAATGACTTCATATGGGGGGCCTGTCTGCAATGACcgtacgttggatgttgggataccttactcatctccccacaggatcacagtg Alignment from CESAR gcCCTAGCACCACCTGCACCGAAGAGTCTTGTGCCAACCAGGGCGTCTGTCTGCAGCAGTGGGATGGTTTTACCTGTGACTGTACTATGACTTCCTATGGAGGCCCTGTCTGCAATGACc acaaaagacggtccatcaagctagacctctgtcaactgtcttcccctcaggcCCTAGCACTAACTGCACTGAGGAGTCTTGTGCCAACCAGGGTGTCTGTTTGCAGCAGTGGGATGGTTTTACATGTGACTGTACAATGACTTCATATGGGGGGCCTGTCTGCAATGACcgtacgttggatgttgggataccttactcatctccccacaggatcacagtg Alignment from Spaln_aa2Genome GCCCTAGCACCACCTGCACCGAAGAGTCTTGTGCCAACCAGGGCGTCTGTCTGCAGCAGTGGGATGGTTTTACCTGTGACTGTACTATGACTTCCTATGGAGGCCCTGTCTGCAATGACC acaaaagacggtccatcaagctagacctctgtcaactgtcttcccctcagGCCCTAGCACTAACTGCACTGAGGAGTCTTGTGCCAACCAGGGTGTCTGTTTGCAGCAGTGGGATGGTTTTACATGTGACTGTACAATGACTTCATATGGGGGGCCTGTCTGCAATGACCgtacgttggatgttgggataccttactcatctccccacaggatcacagtg Alignment from Spaln_nt2Genome GCCCTAGCACCACCTGCACCGAAGAGTCTTGTGCCAACCAGGGCGTCTGTCTGCAGCAGTGGGATGGTTTTACCTGTGACTGTACTATGACTTCCTATGGAGGCCCTGTCTGCAATGACC acaaaagacggtccatcaagctagacctctgtcaactgtcttcccctcagGCCCTAGCACTAACTGCACTGAGGAGTCTTGTGCCAACCAGGGTGTCTGTTTGCAGCAGTGGGATGGTTTTACATGTGACTGTACAATGACTTCATATGGGGGGCCTGTCTGCAATGACCgtacgttggatgttgggataccttactcatctccccacaggatcacagtg Alignment from Pairagon GCCCTAGCACCACCTGCACCGAAGAGTCTTGTGCCAACCAGGGCGTCTGTCTGCAGCAGTGGGATGGTTTTACCTGTGACTGTACTATGACTTCCTATGGAGGCCCTGTCTGCAATGACC acaaaagacggtccatcaagctagacctctgtcaactgtcttcccctcagGCCCTAGCACTAACTGCACTGAGGAGTCTTGTGCCAACCAGGGTGTCTGTTTGCAGCAGTGGGATGGTTTTACATGTGACTGTACAATGACTTCATATGGGGGGCCTGTCTGCAATGACCgtacgttggatgttgggataccttactcatctccccacaggatcacagtg Alignment from Exonerate_protein2genome GCCCTAGCACCACCTGCACCGAAGAGTCTTGTGCCAACCAGGGCGTCTGTCTGCAGCAGTGGGATGGTTTTACCTGTGACTGTACTATGACTTCCTATGGAGGCCCTGTCTGCAATGACC acaaaagacggtccatcaagctagacctctgtcaactgtcttcccctcagGCCCTAGCACTAACTGCACTGAGGAGTCTTGTGCCAACCAGGGTGTCTGTTTGCAGCAGTGGGATGGTTTTACATGTGACTGTACAATGACTTCATATGGGGGGCCTGTCTGCAATGACCgtacgttggatgttgggataccttactcatctccccacaggatcacagtg Alignment from Exonerate_coding2genome GCCCTAGCACCACCTGCACCGAAGAGTCTTGTGCCAACCAGGGCGTCTGTCTGCAGCAGTGGGATGGTTTTACCTGTGACTGTACTATGACTTCCTATGGAGGCCCTGTCTGCAATGACC acaaaagacggtccatcaagctagacctctgtcaactgtcttcccctcagGCCCTAGCACTAACTGCACTGAGGAGTCTTGTGCCAACCAGGGTGTCTGTTTGCAGCAGTGGGATGGTTTTACATGTGACTGTACAATGACTTCATATGGGGGGCCTGTCTGCAATGACCgtacgttggatgttgggataccttactcatctccccacaggatcacagtg Alignment from GeneWise GCCCTAGCACCACCTGCACCGAAGAGTCTTGTGCCAACCAGGGCGTCTGTCTGCAGCAGTGGGATGGTTTTACCTGTGACTGTACTATGACTTCCTATGGAGGCCCTGTCTGCAATGACC acaaaagacggtccatcaagctagacctctgtcaactgtcttcccctcagGCCCTAGCACTAACTGCACTGAGGAGTCTTGTGCCAACCAGGGTGTCTGTTTGCAGCAGTGGGATGGTTTTACATGTGACTGTACAATGACTTCATATGGGGGGCCTGTCTGCAATGACCgtacgttggatgttgggataccttactcatctccccacaggatcacagtg #### Nrxn2_ID1773_17 --> 2 - 0 Original Alignment ctGGGACCACATACATCTTCGGGAAGGGGGGAGCGCTCATCACCTATACATGGCCTCCCAATGACCGGCCCAGTACACGGATGGACCGCCTGGCCGTAGGCTTCAGCACACACCAGCGGAGCGCTGTGCTGGTGCGAGTGGACAGTGCCTCCGGCCTCGGGGACTACTTGCAGCTGCACATT gaaattctactggcattacttcatctgtcttgttttgttttccctggcagcaGGGACCACATATATTTTCAAGAAGGGAGGAGCTCTCATCACATATACCTGGCCTCCCAATGATTGGCCAAGTACTTGGATGGACCGCCTAGCTATAGGATTCAGCACACATCAACAGAGTGCAGTGTTGGTACGAGTGGACAGTGCATCTGGGGTTGGGGAATTCTTGCAGTTACATGTTgtacatatattcaaagctggtctgtcttgccacagtctgattagcccagg Alignment from CESAR ctGGGACCACATACATCTTCGGGAAGGGGGGAGCGCTCATCACCTATACATGGCCTCCCAATGACCGGCCCAGTACACGGATGGACCGCCTGGCCGTAGGCTTCAGCACACACCAGCGGAGCGCTGTGCTGGTGCGAGTGGACAGTGCCTCCGGCCTCGGGGACTACTTGCAGCTGCACATT gaaattctactggcattacttcatctgtcttgttttgttttccctggcagcaGGGACCACATATATTTTCAAGAAGGGAGGAGCTCTCATCACATATACCTGGCCTCCCAATGATTGGCCAAGTACTTGGATGGACCGCCTAGCTATAGGATTCAGCACACATCAACAGAGTGCAGTGTTGGTACGAGTGGACAGTGCATCTGGGGTTGGGGAATTCTTGCAGTTACATGTTgtacatatattcaaagctggtctgtcttgccacagtctgattagcccagg Alignment from Spaln_aa2Genome CTGGGACCACATACATCTTCGGGAAGGGGGGAGCGCTCATCACCTATACATGGCCTCCCAATGACCGGCCCAGTACACGGATGGACCGCCTGGCCGTAGGCTTCAGCACACACCAGCGGAGCGCTGTGCTGGTGCGAGTGGACAGTGCCTCCGGCCTCGGGGACTACTTGCAGCTGCACATT gaaattctactggcattacttcatctgtcttgttttgttttccctggcagCAGGGACCACATATATTTTCAAGAAGGGAGGAGCTCTCATCACATATACCTGGCCTCCCAATGATTGGCCAAGTACTTGGATGGACCGCCTAGCTATAGGATTCAGCACACATCAACAGAGTGCAGTGTTGGTACGAGTGGACAGTGCATCTGGGGTTGGGGAATTCTTGCAGTTACATGTTgtacatatattcaaagctggtctgtcttgccacagtctgattagcccagg Alignment from Spaln_nt2Genome CTGGGACCACATACATCTTCGGGAAGGGGGGAGCGCTCATCACCTATACATGGCCTCCCAATGACCGGCCCAGTACACGGATGGACCGCCTGGCCGTAGGCTTCAGCACACACCAGCGGAGCGCTGTGCTGGTGCGAGTGGACAGTGCCTCCGGCCTCGGGGACTACTTGCAGCTGCACATT gaaattctactggcattacttcatctgtcttgttttgttttccctggcagCAGGGACCACATATATTTTCAAGAAGGGAGGAGCTCTCATCACATATACCTGGCCTCCCAATGATTGGCCAAGTACTTGGATGGACCGCCTAGCTATAGGATTCAGCACACATCAACAGAGTGCAGTGTTGGTACGAGTGGACAGTGCATCTGGGGTTGGGGAATTCTTGCAGTTACATGTTgtacatatattcaaagctggtctgtcttgccacagtctgattagcccagg Alignment from Pairagon CTGGGACCACATACATCTTCGGGAAGGGGGGAGCGCTCATCACCTATACATGGCCTCCCAATGACCGGCCCAGTACACGGATGGACCGCCTGGCCGTAGGCTTCAGCACACACCAGCGGAGCGCTGTGCTGGTGCGAGTGGACAGTGCCTCCGGCCTCGGGGACTACTTGCAGCTGCACATT gaaattctactggcattacttcatctgtcttgttttgttttccctggcagCAGGGACCACATATATTTTCAAGAAGGGAGGAGCTCTCATCACATATACCTGGCCTCCCAATGATTGGCCAAGTACTTGGATGGACCGCCTAGCTATAGGATTCAGCACACATCAACAGAGTGCAGTGTTGGTACGAGTGGACAGTGCATCTGGGGTTGGGGAATTCTTGCAGTTACATGTTgtacatatattcaaagctggtctgtcttgccacagtctgattagcccagg Alignment from Exonerate_protein2genome CTGGGACCACATACATCTTCGGGAAGGGGGGAGCGCTCATCACCTATACATGGCCTCCCAATGACCGGCCCAGTACACGGATGGACCGCCTGGCCGTAGGCTTCAGCACACACCAGCGGAGCGCTGTGCTGGTGCGAGTGGACAGTGCCTCCGGCCTCGGGGACTACTTGCAGCTGCACATT gaaattctactggcattacttcatctgtcttgttttgttttccctggcagCAGGGACCACATATATTTTCAAGAAGGGAGGAGCTCTCATCACATATACCTGGCCTCCCAATGATTGGCCAAGTACTTGGATGGACCGCCTAGCTATAGGATTCAGCACACATCAACAGAGTGCAGTGTTGGTACGAGTGGACAGTGCATCTGGGGTTGGGGAATTCTTGCAGTTACATGTTgtacatatattcaaagctggtctgtcttgccacagtctgattagcccagg Alignment from Exonerate_coding2genome CTGGGACCACATACATCTTCGGGAAGGGGGGAGCGCTCATCACCTATACATGGCCTCCCAATGACCGGCCCAGTACACGGATGGACCGCCTGGCCGTAGGCTTCAGCACACACCAGCGGAGCGCTGTGCTGGTGCGAGTGGACAGTGCCTCCGGCCTCGGGGACTACTTGCAGCTGCACATT gaaattctactggcattacttcatctgtcttgttttgttttccctggcagCAGGGACCACATATATTTTCAAGAAGGGAGGAGCTCTCATCACATATACCTGGCCTCCCAATGATTGGCCAAGTACTTGGATGGACCGCCTAGCTATAGGATTCAGCACACATCAACAGAGTGCAGTGTTGGTACGAGTGGACAGTGCATCTGGGGTTGGGGAATTCTTGCAGTTACATGTTgtacatatattcaaagctggtctgtcttgccacagtctgattagcccagg Alignment from GeneWise CTGGGACCACATACATCTTCGGGAAGGGGGGAGCGCTCATCACCTATACATGGCCTCCCAATGACCGGCCCAGTACACGGATGGACCGCCTGGCCGTAGGCTTCAGCACACACCAGCGGAGCGCTGTGCTGGTGCGAGTGGACAGTGCCTCCGGCCTCGGGGACTACTTGCAGCTGCACATT gaaattctactggcattacttcatctgtcttgttttgttttccctggcagCAGGGACCACATATATTTTCAAGAAGGGAGGAGCTCTCATCACATATACCTGGCCTCCCAATGATTGGCCAAGTACTTGGATGGACCGCCTAGCTATAGGATTCAGCACACATCAACAGAGTGCAGTGTTGGTACGAGTGGACAGTGCATCTGGGGTTGGGGAATTCTTGCAGTTACATGTTgtacatatattcaaagctggtctgtcttgccacagtctgattagcccagg #### Nrxn2_ID1783_21 --> 0 - 1 Original Alignment AACACAGATGACCTCCTGGTGGCCTCGGCTGAGTGTCCAAGTGATGATGAGGACCTAGAGGAGTGTGAGCCTAGTACTg ctggatcctgtctctcctccttccttttcagtgtctctctcttcctccagAACACAGATGACCTCCTGGTGGCATCAGCTGAGTGTCCAAGTGATGATGAAGATCTTGATGAGTGTGAGCCCAGTACTggtgagttactgtcccttgacaagtttttaggcacacaccctcaacgttgt Alignment from CESAR AACACAGATGACCTCCTGGTGGCCTCGGCTGAGTGTCCAAGTGATGATGAGGACCTAGAGGAGTGTGAGCCTAGTACTg ctggatcctgtctctcctccttccttttcagtgtctctctcttcctccagAACACAGATGACCTCCTGGTGGCATCAGCTGAGTGTCCAAGTGATGATGAAGATCTTGATGAGTGTGAGCCCAGTACTggtgagttactgtcccttgacaagtttttaggcacacaccctcaacgttgt Alignment from Spaln_aa2Genome AACACAGATGACCTCCTGGTGGCCTCGGCTGAGTGTCCAAGTGATGATGAGGACCTAGAGGAGTGTGAGCCTAGTACTG ctggatcctgtctctcctccttccttttcagtgtctctctcttcctccagAACACAGATGACCTCCTGGTGGCATCAGCTGAGTGTCCAAGTGATGATGAAGATCTTGATGAGTGTGAGCCCAGTACTGgtgagttactgtcccttgacaagtttttaggcacacaccctcaacgttgt Alignment from Spaln_nt2Genome AACACAGATGACCTCCTGGTGGCCTCGGCTGAGTGTCCAAGTGATGATGAGGACCTAGAGGAGTGTGAGCCTAGTACTG ctggatcctgtctctcctccttccttttcagtgtctctctcttcctccagAACACAGATGACCTCCTGGTGGCATCAGCTGAGTGTCCAAGTGATGATGAAGATCTTGATGAGTGTGAGCCCAGTACTGgtgagttactgtcccttgacaagtttttaggcacacaccctcaacgttgt Alignment from Pairagon AACACAGATGACCTCCTGGTGGCCTCGGCTGAGTGTCCAAGTGATGATGAGGACCTAGAGGAGTGTGAGCCTAGTACTG ctggatcctgtctctcctccttccttttcagtgtctctctcttcctccagAACACAGATGACCTCCTGGTGGCATCAGCTGAGTGTCCAAGTGATGATGAAGATCTTGATGAGTGTGAGCCCAGTACTGgtgagttactgtcccttgacaagtttttaggcacacaccctcaacgttgt Alignment from Exonerate_protein2genome AACACAGATGACCTCCTGGTGGCCTCGGCTGAGTGTCCAAGTGATGATGAGGACCTAGAGGAGTGTGAGCCTAGTACTG ctggatcctgtctctcctccttccttttcagtgtctctctcttcctccagAACACAGATGACCTCCTGGTGGCATCAGCTGAGTGTCCAAGTGATGATGAAGATCTTGATGAGTGTGAGCCCAGTACTGgtgagttactgtcccttgacaagtttttaggcacacaccctcaacgttgt Alignment from Exonerate_coding2genome AACACAGATGACCTCCTGGTGGCCTCGGCTGAGTGTCCAAGTGATGATGAGGACCTAGAGGAGTGTGAGCCTAGTACTG ctggatcctgtctctcctccttccttttcagtgtctctctcttcctccagAACACAGATGACCTCCTGGTGGCATCAGCTGAGTGTCCAAGTGATGATGAAGATCTTGATGAGTGTGAGCCCAGTACTGgtgagttactgtcccttgacaagtttttaggcacacaccctcaacgttgt Alignment from GeneWise AACACAGATGACCTCCTGGTGGCCTCGGCTGAGTGTCCAAGTGATGATGAGGACCTAGAGGAGTGTGAGCCTAGTACTG ctggatcctgtctctcctccttccttttcagtgtctctctcttcctccagAACACAGATGACCTCCTGGTGGCATCAGCTGAGTGTCCAAGTGATGATGAAGATCTTGATGAGTGTGAGCCCAGTACTGgtgagttactgtcccttgacaagtttttaggcacacaccctcaacgttgt #### Nt5c2_ID10036_17 --> 0 - 0 Original Alignment AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gtattgccaaaggattagatatagttgcgtctgctgttgtcctctttcagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGGAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtcagtactgatccttacaactgacagttgatgcaacaccacagtcacta Alignment from CESAR AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gtattgccaaaggattagatatagttgcgtctgctgttgtcctctttcagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGGAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtcagtactgatccttacaactgacagttgatgcaacaccacagtcacta Alignment from Spaln_aa2Genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gtattgccaaaggattagatatagttgcgtctgctgttgtcctctttcagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGGAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtcagtactgatccttacaactgacagttgatgcaacaccacagtcacta Alignment from Spaln_nt2Genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gtattgccaaaggattagatatagttgcgtctgctgttgtcctctttcagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGGAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtcagtactgatccttacaactgacagttgatgcaacaccacagtcacta Alignment from Pairagon AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gtattgccaaaggattagatatagttgcgtctgctgttgtcctctttcagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGGAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtcagtactgatccttacaactgacagttgatgcaacaccacagtcacta Alignment from Exonerate_protein2genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gtattgccaaaggattagatatagttgcgtctgctgttgtcctctttcagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGGAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtcagtactgatccttacaactgacagttgatgcaacaccacagtcacta Alignment from Exonerate_coding2genome GTAGCAATGAGCGCCCGGACATT---AGTTCCATCCAGAGACGGATTAAGAAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG GTATTGCCAAAGGATTAGATATAGTTGCGTCTGCTGTTGTCCTCTTTCAGGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGGAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtcagtactgatccttacaactgacagttgatgcaacaccacagtcacta Alignment from GeneWise AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gtattgccaaaggattagatatagttgcgtctgctgttgtcctctttcagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGGAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtcagtactgatccttacaactgacagttgatgcaacaccacagtcacta #### Nt5c2_ID10039_14 --> 2 - 1 Original Alignment gtTCATCTGATACAATCTGTGACCTGTTGGGAGCTAAGGGCAAAGACATTTTGTATATTGGAGATCACATTTTTGGAGACATTCTGAAGTCAAAGAAACGGCAAGGGTGGAGGACTTTCTTGGTGATTCCTGAGCTTGCGCAGGAGCTCCACGTCTGGACGGACAAGAGTt tagtctagtgctcaattgattcatttttctcgctgccccttcccttccaggtTCATCTGATATGATCTGTGAGCTGCTGGGTGCTAAGGGCAAAGACATTCTATATGTCGGTGATCACATATTTGGGGATATTCTGAAGTCTAAGAAACAACAGGGCTGGAGAACATTCTTGGTGATTCCTGAGCTTGCACAAGAGCTCCATGTCTGGGCAGACAAAAGTtgtaaagaacacatgtctcagcctagacctttagctcacccctgcataaac Alignment from CESAR gtTCATCTGATACAATCTGTGACCTGTTGGGAGCTAAGGGCAAAGACATTTTGTATATTGGAGATCACATTTTTGGAGACATTCTGAAGTCAAAGAAACGGCAAGGGTGGAGGACTTTCTTGGTGATTCCTGAGCTTGCGCAGGAGCTCCACGTCTGGACGGACAAGAGTt tagtctagtgctcaattgattcatttttctcgctgccccttcccttccaggtTCATCTGATATGATCTGTGAGCTGCTGGGTGCTAAGGGCAAAGACATTCTATATGTCGGTGATCACATATTTGGGGATATTCTGAAGTCTAAGAAACAACAGGGCTGGAGAACATTCTTGGTGATTCCTGAGCTTGCACAAGAGCTCCATGTCTGGGCAGACAAAAGTtgtaaagaacacatgtctcagcctagacctttagctcacccctgcataaac Alignment from Spaln_aa2Genome GTTCATCTGATACAATCTGTGACCTGTTGGGAGCTAAGGGCAAAGACATTTTGTATATTGGAGATCACATTTTTGGAGACATTCTGAAGTCAAAGAAACGGCAAGGGTGGAGGACTTTCTTGGTGATTCCTGAGCTTGCGCAGGAGCTCCACGTCTGGACGGACAAGAGTT tagtctagtgctcaattgattcatttttctcgctgccccttcccttccagGTTCATCTGATATGATCTGTGAGCTGCTGGGTGCTAAGGGCAAAGACATTCTATATGTCGGTGATCACATATTTGGGGATATTCTGAAGTCTAAGAAACAACAGGGCTGGAGAACATTCTTGGTGATTCCTGAGCTTGCACAAGAGCTCCATGTCTGGGCAGACAAAAGTTgtaaagaacacatgtctcagcctagacctttagctcacccctgcataaac Alignment from Spaln_nt2Genome GTTCATCTGATACAATCTGTGACCTGTTGGGAGCTAAGGGCAAAGACATTTTGTATATTGGAGATCACATTTTTGGAGACATTCTGAAGTCAAAGAAACGGCAAGGGTGGAGGACTTTCTTGGTGATTCCTGAGCTTGCGCAGGAGCTCCACGTCTGGACGGACAAGAGTT tagtctagtgctcaattgattcatttttctcgctgccccttcccttccagGTTCATCTGATATGATCTGTGAGCTGCTGGGTGCTAAGGGCAAAGACATTCTATATGTCGGTGATCACATATTTGGGGATATTCTGAAGTCTAAGAAACAACAGGGCTGGAGAACATTCTTGGTGATTCCTGAGCTTGCACAAGAGCTCCATGTCTGGGCAGACAAAAGTTgtaaagaacacatgtctcagcctagacctttagctcacccctgcataaac Alignment from Pairagon GTTCATCTGATACAATCTGTGACCTGTTGGGAGCTAAGGGCAAAGACATTTTGTATATTGGAGATCACATTTTTGGAGACATTCTGAAGTCAAAGAAACGGCAAGGGTGGAGGACTTTCTTGGTGATTCCTGAGCTTGCGCAGGAGCTCCACGTCTGGACGGACAAGAGTT tagtctagtgctcaattgattcatttttctcgctgccccttcccttccagGTTCATCTGATATGATCTGTGAGCTGCTGGGTGCTAAGGGCAAAGACATTCTATATGTCGGTGATCACATATTTGGGGATATTCTGAAGTCTAAGAAACAACAGGGCTGGAGAACATTCTTGGTGATTCCTGAGCTTGCACAAGAGCTCCATGTCTGGGCAGACAAAAGTTgtaaagaacacatgtctcagcctagacctttagctcacccctgcataaac Alignment from Exonerate_protein2genome GTTCATCTGATACAATCTGTGACCTGTTGGGAGCTAAGGGCAAAGACATTTTGTATATTGGAGATCACATTTTTGGAGACATTCTGAAGTCAAAGAAACGGCAAGGGTGGAGGACTTTCTTGGTGATTCCTGAGCTTGCGCAGGAGCTCCACGTCTGGACGGACAAGAGTT tagtctagtgctcaattgattcatttttctcgctgccccttcccttccagGTTCATCTGATATGATCTGTGAGCTGCTGGGTGCTAAGGGCAAAGACATTCTATATGTCGGTGATCACATATTTGGGGATATTCTGAAGTCTAAGAAACAACAGGGCTGGAGAACATTCTTGGTGATTCCTGAGCTTGCACAAGAGCTCCATGTCTGGGCAGACAAAAGTTgtaaagaacacatgtctcagcctagacctttagctcacccctgcataaac Alignment from Exonerate_coding2genome GTTCATCTGATACAATCTGTGACCTGTTGGGAGCTAAGGGCAAAGACATTTTGTATATTGGAGATCACATTTTTGGAGACATTCTGAAGTCAAAGAAACGGCAAGGGTGGAGGACTTTCTTGGTGATTCCTGAGCTTGCGCAGGAGCTCCACGTCTGGACGGACAAGAGTT tagtctagtgctcaattgattcatttttctcgctgccccttcccttccagGTTCATCTGATATGATCTGTGAGCTGCTGGGTGCTAAGGGCAAAGACATTCTATATGTCGGTGATCACATATTTGGGGATATTCTGAAGTCTAAGAAACAACAGGGCTGGAGAACATTCTTGGTGATTCCTGAGCTTGCACAAGAGCTCCATGTCTGGGCAGACAAAAGTTgtaaagaacacatgtctcagcctagacctttagctcacccctgcataaac Alignment from GeneWise GTTCATCTGATACAATCTGTGACCTGTTGGGAGCTAAGGGCAAAGACATTTTGTATATTGGAGATCACATTTTTGGAGACATTCTGAAGTCAAAGAAACGGCAAGGGTGGAGGACTTTCTTGGTGATTCCTGAGCTTGCGCAGGAGCTCCACGTCTGGACGGACAAGAGTT tagtctagtgctcaattgattcatttttctcgctgccccttcccttccagGTTCATCTGATATGATCTGTGAGCTGCTGGGTGCTAAGGGCAAAGACATTCTATATGTCGGTGATCACATATTTGGGGATATTCTGAAGTCTAAGAAACAACAGGGCTGGAGAACATTCTTGGTGATTCCTGAGCTTGCACAAGAGCTCCATGTCTGGGCAGACAAAAGTTgtaaagaacacatgtctcagcctagacctttagctcacccctgcataaac #### Nt5c2_ID10048_5 --> 1 - 2 Original Alignment aGGACTTGTCTTTGACACGCTCTATGGAAATCTTTTGAAAGTCGATGCCTATGGAAACCTCTTGGTGTGTGCACATGGATTTAACTTCATAAGAgg tgaataccctttatttccttctccttggaatgaccttgactctagcacagaGGACTTGTCTTTGACACACTCTATGGAAATCTTTTGAAAGTTGATGCCTATGGGAACCTCTTGGTGTGTGTACACGGATTTAACTTTATAAGAgggtaaatcactcacacttgcatgggatagttgggtagggggaggaagggta Alignment from CESAR aGGACTTGTCTTTGACACGCTCTATGGAAATCTTTTGAAAGTCGATGCCTATGGAAACCTCTTGGTGTGTGCACATGGATTTAACTTCATAAGAgg tgaataccctttatttccttctccttggaatgaccttgactctagcacagaGGACTTGTCTTTGACACACTCTATGGAAATCTTTTGAAAGTTGATGCCTATGGGAACCTCTTGGTGTGTGTACACGGATTTAACTTTATAAGAgggtaaatcactcacacttgcatgggatagttgggtagggggaggaagggta Alignment from Spaln_aa2Genome AGGACTTGTCTTTGACACGCTCTATGGAAATCTTTTGAAAGTCGATGCCTATGGAAACCTCTTGGTGTGTGCACATGGATTTAACTTCATAAGAGG tgaataccctttatttccttctccttggaatgaccttgactctagcacagAGGACTTGTCTTTGACACACTCTATGGAAATCTTTTGAAAGTTGATGCCTATGGGAACCTCTTGGTGTGTGTACACGGATTTAACTTTATAAGAGGgtaaatcactcacacttgcatgggatagttgggtagggggaggaagggta Alignment from Spaln_nt2Genome AGGACTTGTCTTTGACACGCTCTATGGAAATCTTTTGAAAGTCGATGCCTATGGAAACCTCTTGGTGTGTGCACATGGATTTAACTTCATAAGAGG tgaataccctttatttccttctccttggaatgaccttgactctagcacagAGGACTTGTCTTTGACACACTCTATGGAAATCTTTTGAAAGTTGATGCCTATGGGAACCTCTTGGTGTGTGTACACGGATTTAACTTTATAAGAGGgtaaatcactcacacttgcatgggatagttgggtagggggaggaagggta Alignment from Pairagon AGGACTTGTCTTTGACACGCTCTATGGAAATCTTTTGAAAGTCGATGCCTATGGAAACCTCTTGGTGTGTGCACATGGATTTAACTTCATAAGAGG tgaataccctttatttccttctccttggaatgaccttgactctagcacagAGGACTTGTCTTTGACACACTCTATGGAAATCTTTTGAAAGTTGATGCCTATGGGAACCTCTTGGTGTGTGTACACGGATTTAACTTTATAAGAGGgtaaatcactcacacttgcatgggatagttgggtagggggaggaagggta Alignment from Exonerate_protein2genome AGGACTTGTCTTTGACACGCTCTATGGAAATCTTTTGAAAGTCGATGCCTATGGAAACCTCTTGGTGTGTGCACATGGATTTAACTTCATAAGAGG tgaataccctttatttccttctccttggaatgaccttgactctagcacagAGGACTTGTCTTTGACACACTCTATGGAAATCTTTTGAAAGTTGATGCCTATGGGAACCTCTTGGTGTGTGTACACGGATTTAACTTTATAAGAGGgtaaatcactcacacttgcatgggatagttgggtagggggaggaagggta Alignment from Exonerate_coding2genome AGGACTTGTCTTTGACACGCTCTATGGAAATCTTTTGAAAGTCGATGCCTATGGAAACCTCTTGGTGTGTGCACATGGATTTAACTTCATAAGAGG tgaataccctttatttccttctccttggaatgaccttgactctagcacagAGGACTTGTCTTTGACACACTCTATGGAAATCTTTTGAAAGTTGATGCCTATGGGAACCTCTTGGTGTGTGTACACGGATTTAACTTTATAAGAGGgtaaatcactcacacttgcatgggatagttgggtagggggaggaagggta Alignment from GeneWise AGGACTTGTCTTTGACACGCTCTATGGAAATCTTTTGAAAGTCGATGCCTATGGAAACCTCTTGGTGTGTGCACATGGATTTAACTTCATAAGAGG tgaataccctttatttccttctccttggaatgaccttgactctagcacagAGGACTTGTCTTTGACACACTCTATGGAAATCTTTTGAAAGTTGATGCCTATGGGAACCTCTTGGTGTGTGTACACGGATTTAACTTTATAAGAGGgtaaatcactcacacttgcatgggatagttgggtagggggaggaagggta #### Nt5c2_ID10055_3 --> 1 - 1 Original Alignment gGTGTTTGTGAACCGAAGTTTAGCCATGGAAAAAATAAAGTGTTTTGGTTTTGATATGGATTATACCCTAGCCg tttgtattattgtgccatggagtctttgcgggtgctctggttgttttcaggGTCTTTGTGAACCATGGTCTGGCTATGGAAAGAATAAAGTGTTTTGGTTTTGACATGGATTATACACTAGCTggtaagtagatctttcactctagggcgcatgcacaggtttggcattgctgg Alignment from CESAR gGTGTTTGTGAACCGAAGTTTAGCCATGGAAAAAATAAAGTGTTTTGGTTTTGATATGGATTATACCCTAGCCg tttgtattattgtgccatggagtctttgcgggtgctctggttgttttcaggGTCTTTGTGAACCATGGTCTGGCTATGGAAAGAATAAAGTGTTTTGGTTTTGACATGGATTATACACTAGCTggtaagtagatctttcactctagggcgcatgcacaggtttggcattgctgg Alignment from Spaln_aa2Genome GGTGTTTGTGAACCGAAGTTTAGCCATGGAAAAAATAAAGTGTTTTGGTTTTGATATGGATTATACCCTAGCCG tttgtattattgtgccatggagtctttgcgggtgctctggttgttttcagGGTCTTTGTGAACCATGGTCTGGCTATGGAAAGAATAAAGTGTTTTGGTTTTGACATGGATTATACACTAGCTGgtaagtagatctttcactctagggcgcatgcacaggtttggcattgctgg Alignment from Spaln_nt2Genome GGTGTTTGTGAACCGAAGTTTAGCCATGGAAAAAATAAAGTGTTTTGGTTTTGATATGGATTATACCCTAGCCG tttgtattattgtgccatggagtctttgcgggtgctctggttgttttcagGGTCTTTGTGAACCATGGTCTGGCTATGGAAAGAATAAAGTGTTTTGGTTTTGACATGGATTATACACTAGCTGgtaagtagatctttcactctagggcgcatgcacaggtttggcattgctgg Alignment from Pairagon GGTGTTTGTGAACCGAAGTTTAGCCATGGAAAAAATAAAGTGTTTTGGTTTTGATATGGATTATACCCTAGCCG tttgtattattgtgccatggagtctttgcgggtgctctggttgttttcagGGTCTTTGTGAACCATGGTCTGGCTATGGAAAGAATAAAGTGTTTTGGTTTTGACATGGATTATACACTAGCTGgtaagtagatctttcactctagggcgcatgcacaggtttggcattgctgg Alignment from Exonerate_protein2genome GGTGTTTGTGAACCGAAGTTTAGCCATGGAAAAAATAAAGTGTTTTGGTTTTGATATGGATTATACCCTAGCCG tttgtattattgtgccatggagtctttgcgggtgctctggttgttttcagGGTCTTTGTGAACCATGGTCTGGCTATGGAAAGAATAAAGTGTTTTGGTTTTGACATGGATTATACACTAGCTGgtaagtagatctttcactctagggcgcatgcacaggtttggcattgctgg Alignment from Exonerate_coding2genome GGTGTTTGTGAACCGAAGTTTAGCCATGGAAAAAATAAAGTGTTTTGGTTTTGATATGGATTATACCCTAGCCG tttgtattattgtgccatggagtctttgcgggtgctctggttgttttcagGGTCTTTGTGAACCATGGTCTGGCTATGGAAAGAATAAAGTGTTTTGGTTTTGACATGGATTATACACTAGCTGgtaagtagatctttcactctagggcgcatgcacaggtttggcattgctgg Alignment from GeneWise GGTGTTTGTGAACCGAAGTTTAGCCATGGAAAAAATAAAGTGTTTTGGTTTTGATATGGATTATACCCTAGCCG tttgtattattgtgccatggagtctttgcgggtgctctggttgttttcagGGTCTTTGTGAACCATGGTCTGGCTATGGAAAGAATAAAGTGTTTTGGTTTTGACATGGATTATACACTAGCTGgtaagtagatctttcactctagggcgcatgcacaggtttggcattgctgg #### Nt5c2_ID10063_2 --> 1 - 2 Original Alignment aATTCATCCTACAAATAAGATGACGACCTCCTGGAGTGACCGCTTACAGAATGCAGCAGATGTGCCTGCTAACATGGATAAGCATGCCTTGAAAAAGTACCGTCGAGAAGCCTATCACcg tccatagttagacaatataacattttagagtatgtgccattttgccaaagcCTTCACCCTACAAACAAAATGATGACAGCCTGGAGTGACCGCCTACAGAACGCTGCAGATGTCCCAGCTAACATGGATAAACACGCATTGAAAAAGTATCGACAGGAAGCCTATCACcagtaagtccacttgaggacttgttgtgtcagggaatgtgtatactcacatg Alignment from CESAR aATTCATCCTACAAATAAGATGACGACCTCCTGGAGTGACCGCTTACAGAATGCAGCAGATGTGCCTGCTAACATGGATAAGCATGCCTTGAAAAAGTACCGTCGAGAAGCCTATCACcg tccatagttagacaatataacattttagagtatgtgccattttgccaaagcCTTCACCCTACAAACAAAATGATGACAGCCTGGAGTGACCGCCTACAGAACGCTGCAGATGTCCCAGCTAACATGGATAAACACGCATTGAAAAAGTATCGACAGGAAGCCTATCACcagtaagtccacttgaggacttgttgtgtcagggaatgtgtatactcacatg Alignment from Spaln_aa2Genome AATTCATCCTACAAATAAGATGACGACCTCCTGGAGTGACCGCTTACAGAATGCAGCAGATGTGCCTGCTAACATGGATAAGCATGCCTTGAAAAAGTACCGTCGAGAAGCCTATCACCG tccatagttagacaatataacattttagagtatgtgccattttgccaaagCCTTCACCCTACAAACAAAATGATGACAGCCTGGAGTGACCGCCTACAGAACGCTGCAGATGTCCCAGCTAACATGGATAAACACGCATTGAAAAAGTATCGACAGGAAGCCTATCACCAgtaagtccacttgaggacttgttgtgtcagggaatgtgtatactcacatg Alignment from Spaln_nt2Genome AATTCATCCTACAAATAAGATGACGACCTCCTGGAGTGACCGCTTACAGAATGCAGCAGATGTGCCTGCTAACATGGATAAGCATGCCTTGAAAAAGTACCGTCGAGAAGCCTATCACCG tccatagttagacaatataacattttagagtatgtgccattttgccaaagCCTTCACCCTACAAACAAAATGATGACAGCCTGGAGTGACCGCCTACAGAACGCTGCAGATGTCCCAGCTAACATGGATAAACACGCATTGAAAAAGTATCGACAGGAAGCCTATCACCAgtaagtccacttgaggacttgttgtgtcagggaatgtgtatactcacatg Alignment from Pairagon AATTCATCCTACAAATAAGATGACGACCTCCTGGAGTGACCGCTTACAGAATGCAGCAGATGTGCCTGCTAACATGGATAAGCATGCCTTGAAAAAGTACCGTCGAGAAGCCTATCACCG tccatagttagacaatataacattttagagtatgtgccattttgccaaagCCTTCACCCTACAAACAAAATGATGACAGCCTGGAGTGACCGCCTACAGAACGCTGCAGATGTCCCAGCTAACATGGATAAACACGCATTGAAAAAGTATCGACAGGAAGCCTATCACCAgtaagtccacttgaggacttgttgtgtcagggaatgtgtatactcacatg Alignment from Exonerate_protein2genome AATTCATCCTACAAATAAGATGACGACCTCCTGGAGTGACCGCTTACAGAATGCAGCAGATGTGCCTGCTAACATGGATAAGCATGCCTTGAAAAAGTACCGTCGAGAAGCCTATCACCG tccatagttagacaatataacattttagagtatgtgccattttgccaaagCCTTCACCCTACAAACAAAATGATGACAGCCTGGAGTGACCGCCTACAGAACGCTGCAGATGTCCCAGCTAACATGGATAAACACGCATTGAAAAAGTATCGACAGGAAGCCTATCACCAgtaagtccacttgaggacttgttgtgtcagggaatgtgtatactcacatg Alignment from Exonerate_coding2genome AATTCATCCTACAAATAAGATGACGACCTCCTGGAGTGACCGCTTACAGAATGCAGCAGATGTGCCTGCTAACATGGATAAGCATGCCTTGAAAAAGTACCGTCGAGAAGCCTATCACCG tccatagttagacaatataacattttagagtatgtgccattttgccaaagCCTTCACCCTACAAACAAAATGATGACAGCCTGGAGTGACCGCCTACAGAACGCTGCAGATGTCCCAGCTAACATGGATAAACACGCATTGAAAAAGTATCGACAGGAAGCCTATCACCAgtaagtccacttgaggacttgttgtgtcagggaatgtgtatactcacatg Alignment from GeneWise ATTCATCCTACAAATAAGATGACGACCTCCTGGAGTGACCGCTTACAGAATGCAGCAGATGTGCCTGCTAACATGGATAAGCATGCCTTGAAAAAGTACCGTCGAGAAGCCTATCACCG tccatagttagacaatataacattttagagtatgtgccattttgccaaagcCTTCACCCTACAAACAAAATGATGACAGCCTGGAGTGACCGCCTACAGAACGCTGCAGATGTCCCAGCTAACATGGATAAACACGCATTGAAAAAGTATCGACAGGAAGCCTATCACCAgtaagtccacttgaggacttgttgtgtcagggaatgtgtatactcacatg #### Nxf1_ID2342_2 --> 2 - 2 Original Alignment agCATGATGACCGTGTTAGTTTCCCTCAAAGAAGAAAGAAAGGCCGGGGGCCTTTCCGATGGAAGTGTGGTGAGGGGAATCGTAGGTCTGGAAGAGGTGGTTCTGGTGTACAGTCTTCCCGATTTGAGGAAGATGATGGCGATGTAGCAATGAATGATCCCCAGGATGGCCCCCGAGTAAGAta taaatattaacttaccctcagagtgttttaatgcctctgtcttctttcagagCATGATGATCGTGTTAGTTTTCACCAAAGAAGAAAGAAAGGTCAGGGGTCTTTTCGGTGGAAGTGTGGTGAGGGGAACCGTGGGTCTGGGAGAGGTGGTTCTGGTGTACAGTCCTCAAGATTTGAGGAAGAAGATGGTGATGTAGCAATGACTGACCCACAGGATGGACCACAAGTTAGAtagtaaaccaggcccaccttcattgctaagtcatctgttggtaatgaaaacc Alignment from CESAR agCATGATGACCGTGTTAGTTTCCCTCAAAGAAGAAAGAAAGGCCGGGGGCCTTTCCGATGGAAGTGTGGTGAGGGGAATCGTAGGTCTGGAAGAGGTGGTTCTGGTGTACAGTCTTCCCGATTTGAGGAAGATGATGGCGATGTAGCAATGAATGATCCCCAGGATGGCCCCCGAGTAAGAta taaatattaacttaccctcagagtgttttaatgcctctgtcttctttcagagCATGATGATCGTGTTAGTTTTCACCAAAGAAGAAAGAAAGGTCAGGGGTCTTTTCGGTGGAAGTGTGGTGAGGGGAACCGTGGGTCTGGGAGAGGTGGTTCTGGTGTACAGTCCTCAAGATTTGAGGAAGAAGATGGTGATGTAGCAATGACTGACCCACAGGATGGACCACAAGTTAGAtagtaaaccaggcccaccttcattgctaagtcatctgttggtaatgaaaacc Alignment from Spaln_aa2Genome AGCATGATGACCGTGTTAGTTTCCCTCAAAGAAGAAAGAAAGGCCGGGGGCCTTTCCGATGGAAGTGTGGTGAGGGGAATCGTAGGTCTGGAAGAGGTGGTTCTGGTGTACAGTCTTCCCGATTTGAGGAAGATGATGGCGATGTAGCAATGAATGATCCCCAGGATGGCCCCCGAGTAAGATA taaatattaacttaccctcagagtgttttaatgcctctgtcttctttcagAGCATGATGATCGTGTTAGTTTTCACCAAAGAAGAAAGAAAGGTCAGGGGTCTTTTCGGTGGAAGTGTGGTGAGGGGAACCGTGGGTCTGGGAGAGGTGGTTCTGGTGTACAGTCCTCAAGATTTGAGGAAGAAGATGGTGATGTAGCAATGACTGACCCACAGGATGGACCACAAGTTAGATAgtaaaccaggcccaccttcattgctaagtcatctgttggtaatgaaaacc Alignment from Spaln_nt2Genome AGCATGATGACCGTGTTAGTTTCCCTCAAAGAAGAAAGAAAGGCCGGGGGCCTTTCCGATGGAAGTGTGGTGAGGGGAATCGTAGGTCTGGAAGAGGTGGTTCTGGTGTACAGTCTTCCCGATTTGAGGAAGATGATGGCGATGTAGCAATGAATGATCCCCAGGATGGCCCCCGAGTAAGATA taaatattaacttaccctcagagtgttttaatgcctctgtcttctttcagAGCATGATGATCGTGTTAGTTTTCACCAAAGAAGAAAGAAAGGTCAGGGGTCTTTTCGGTGGAAGTGTGGTGAGGGGAACCGTGGGTCTGGGAGAGGTGGTTCTGGTGTACAGTCCTCAAGATTTGAGGAAGAAGATGGTGATGTAGCAATGACTGACCCACAGGATGGACCACAAGTTAGATAgtaaaccaggcccaccttcattgctaagtcatctgttggtaatgaaaacc Alignment from Pairagon AGCATGATGACCGTGTTAGTTTCCCTCAAAGAAGAAAGAAAGGCCGGGGGCCTTTCCGATGGAAGTGTGGTGAGGGGAATCGTAGGTCTGGAAGAGGTGGTTCTGGTGTACAGTCTTCCCGATTTGAGGAAGATGATGGCGATGTAGCAATGAATGATCCCCAGGATGGCCCCCGAGTAAGATA taaatattaacttaccctcagagtgttttaatgcctctgtcttctttcagAGCATGATGATCGTGTTAGTTTTCACCAAAGAAGAAAGAAAGGTCAGGGGTCTTTTCGGTGGAAGTGTGGTGAGGGGAACCGTGGGTCTGGGAGAGGTGGTTCTGGTGTACAGTCCTCAAGATTTGAGGAAGAAGATGGTGATGTAGCAATGACTGACCCACAGGATGGACCACAAGTTAGATAgtaaaccaggcccaccttcattgctaagtcatctgttggtaatgaaaacc Alignment from Exonerate_protein2genome AGCATGATGACCGTGTTAGTTTCCCTCAAAGAAGAAAGAAAGGCCGGGGGCCTTTCCGATGGAAGTGTGGTGAGGGGAATCGTAGGTCTGGAAGAGGTGGTTCTGGTGTACAGTCTTCCCGATTTGAGGAAGATGATGGCGATGTAGCAATGAATGATCCCCAGGATGGCCCCCGAGTAAGATA taaatattaacttaccctcagagtgttttaatgcctctgtcttctttcagAGCATGATGATCGTGTTAGTTTTCACCAAAGAAGAAAGAAAGGTCAGGGGTCTTTTCGGTGGAAGTGTGGTGAGGGGAACCGTGGGTCTGGGAGAGGTGGTTCTGGTGTACAGTCCTCAAGATTTGAGGAAGAAGATGGTGATGTAGCAATGACTGACCCACAGGATGGACCACAAGTTAGATAgtaaaccaggcccaccttcattgctaagtcatctgttggtaatgaaaacc Alignment from Exonerate_coding2genome AACGAGCATGATGACCGTGTTAGTTTCCCTCAAAGAAGAAAGAAAGGCCGGGGGCCTTTCCGATGGAAGTGTGGTGAGGGGAATCGTAGGTCTGGAAGAGGTGGTTCTGGTGTACAGTCTTCCCGATTTGAGGAAGATGATGGCGATGTAGCAATGAATGATCCCCAGGATGGCCCCCGAGTAAGATA taaatattaacttaccctcagagtgttttaatgcctctgtcttcttTCAGAGCATGATGATCGTGTTAGTTTTCACCAAAGAAGAAAGAAAGGTCAGGGGTCTTTTCGGTGGAAGTGTGGTGAGGGGAACCGTGGGTCTGGGAGAGGTGGTTCTGGTGTACAGTCCTCAAGATTTGAGGAAGAAGATGGTGATGTAGCAATGACTGACCCACAGGATGGACCACAAGTTAGATAgtaaaccaggcccaccttcattgctaagtcatctgttggtaatgaaaacc Alignment from GeneWise GCGGACGAAGGGAAGTCATACAACGAGCATGATGACCGTGTTAGTTTCCCTCAAAGAAGAAAGAAAGGCCGGGGGCCTTTCCGATGGAAGTGTGGTGAGGGGAATCGTAGGTCTGGAAGAGGTGGTTCTGGTGTACAGTCTTCCCGATTTGAGGAAGATGATGGCGATGTAGCAATGAATGATCCCCAGGATGGCCCCCGAGTAAGATA cagagtgttttaatgcctctgtctt------------------CTTTCAGAGCATGATGATCGTGTTAGTTTTCACCAAAGAAGAAAGAAAGGTCAGGGGTCTTTTCGGTGGAAGTGTGGTGAGGGGAACCGTGGGTCTGGGAGAGGTGGTTCTGGTGTACAGTCCTCAAGATTTGAGGAAGAAGATGGTGATGTAGCAATGACTGACCCACAGGATGGACCACAAGTTAGATAgtaaaccaggcccaccttcattgctaagtcatctgttggtaatgaaaacc #### Nxf1_ID2344_4 --> 0 - 0 Original Alignment ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG aatcagaagtcagaaataattatgtacctaaaagactccttttctcacagATACCCTATGGTAAAAAGCATGACAAAACTTGGCTTCTCAGCATGATTCAGAGCAAATGTAGTGTACCTTTCAACCCCATTGAGgtgagtaaaatagagccagatttgagcagcttatgttggatgaggggtac Alignment from CESAR ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG aatcagaagtcagaaataattatgtacctaaaagactccttttctcacagATACCCTATGGTAAAAAGCATGACAAAACTTGGCTTCTCAGCATGATTCAGAGCAAATGTAGTGTACCTTTCAACCCCATTGAGgtgagtaaaatagagccagatttgagcagcttatgttggatgaggggtac Alignment from Spaln_aa2Genome ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG aatcagaagtcagaaataattatgtacctaaaagactccttttctcacagATACCCTATGGTAAAAAGCATGACAAAACTTGGCTTCTCAGCATGATTCAGAGCAAATGTAGTGTACCTTTCAACCCCATTGAGgtgagtaaaatagagccagatttgagcagcttatgttggatgaggggtac Alignment from Spaln_nt2Genome ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG aatcagaagtcagaaataattatgtacctaaaagactccttttctcacagATACCCTATGGTAAAAAGCATGACAAAACTTGGCTTCTCAGCATGATTCAGAGCAAATGTAGTGTACCTTTCAACCCCATTGAGgtgagtaaaatagagccagatttgagcagcttatgttggatgaggggtac Alignment from Pairagon ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG aatcagaagtcagaaataattatgtacctaaaagactccttttctcacagATACCCTATGGTAAAAAGCATGACAAAACTTGGCTTCTCAGCATGATTCAGAGCAAATGTAGTGTACCTTTCAACCCCATTGAGgtgagtaaaatagagccagatttgagcagcttatgttggatgaggggtac Alignment from Exonerate_protein2genome ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG aatcagaagtcagaaataattatgtacctaaaagactccttttctcacagATACCCTATGGTAAAAAGCATGACAAAACTTGGCTTCTCAGCATGATTCAGAGCAAATGTAGTGTACCTTTCAACCCCATTGAGgtgagtaaaatagagccagatttgagcagcttatgttggatgaggggtac Alignment from Exonerate_coding2genome ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG aatcagaagtcagaaataattatgtacctaaaagactccttttctcacagATACCCTATGGTAAAAAGCATGACAAAACTTGGCTTCTCAGCATGATTCAGAGCAAATGTAGTGTACCTTTCAACCCCATTGAGgtgagtaaaatagagccagatttgagcagcttatgttggatgaggggtac Alignment from GeneWise ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG-------------------------------------------------- aatcagaagtcagaaataattatgtacctaaaagactccttttctcacagATACCCTATGGTAAAAAGCATGACAAAACTTGGCTTCTCAGCATGATTCAGAGCAAATGTAGTGTACCTTTCAACCCCATTGAGGTGAGTAAAATAGAGCCAGATTTGAGCAGCTTATGTTGGATGAGGGGTAC #### Nxf1_ID2348_8 --> 2 - 0 Original Alignment atTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG tgggcaccaattttgagtcagtcgttccttgtcctgtccttgcttttcagatTTGGTAGCTCAGAACATTGTTGTCATTCTAAACCGCAGGAGCTGCATGGCAGCAACTGTCCGCACCATCAAGGAGAATATTCCTGAGgtaagagttctttctctccgttatcatctaatcatgcttacttaattaga Alignment from CESAR atTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG tgggcaccaattttgagtcagtcgttccttgtcctgtccttgcttttcagatTTGGTAGCTCAGAACATTGTTGTCATTCTAAACCGCAGGAGCTGCATGGCAGCAACTGTCCGCACCATCAAGGAGAATATTCCTGAGgtaagagttctttctctccgttatcatctaatcatgcttacttaattaga Alignment from Spaln_aa2Genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG tgggcaccaattttgagtcagtcgttccttgtcctgtccttgcttttcagATTTGGTAGCTCAGAACATTGTTGTCATTCTAAACCGCAGGAGCTGCATGGCAGCAACTGTCCGCACCATCAAGGAGAATATTCCTGAGgtaagagttctttctctccgttatcatctaatcatgcttacttaattaga Alignment from Spaln_nt2Genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG C tgggcaccaattttgagtcagtcgttccttgtcctgtccttgcttttcagATTTGGTAGCTCAGAACATTGTTGTCATTCTAAACCGCAGGAGCTGCATGGCAGCAACTGTCCGCACCATCAAGGAGAATATTCCTGAGgtaagagttctttctctccgttatcatctaatcatgcttacttaattagA Alignment from Pairagon ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG tgggcaccaattttgagtcagtcgttccttgtcctgtccttgcttttcagATTTGGTAGCTCAGAACATTGTTGTCATTCTAAACCGCAGGAGCTGCATGGCAGCAACTGTCCGCACCATCAAGGAGAATATTCCTGAGgtaagagttctttctctccgttatcatctaatcatgcttacttaattaga Alignment from Exonerate_protein2genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAGCTA tgggcaccaattttgagtcagtcgttccttgtcctgtccttgcttttcagATTTGGTAGCTCAGAACATTGTTGTCATTCTAAACCGCAGGAGCTGCATGGCAGCAACTGTCCGCACCATCAAGGAGAATATTCCTGAG---gtaagagttctttctctccgttatcatctaatcatgcttacttaatt Alignment from Exonerate_coding2genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAGCTA tgggcaccaattttgagtcagtcgttccttgtcctgtccttgcttttcagATTTGGTAGCTCAGAACATTGTTGTCATTCTAAACCGCAGGAGCTGCATGGCAGCAACTGTCCGCACCATCAAGGAGAATATTCCTGAG---gtaagagttctttctctccgttatcatctaatcatgcttacttaatt Alignment from GeneWise ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAGCTATTG tgggcaccaattttgagtcagtcgttccttgtcctgtccttgcttttcagATTTGGTAGCTCAGAACATTGTTGTCATTCTAAACCGCAGGAGCTGCATGGCAGCAACTGTCCGCACCATCAAGGAGAATATTCCTGAGGTAAGAgttctttctctccgttatcatctaatcatgcttacttaattaga #### Nxf1_ID2356_16 --> 2 - 0 Original Alignment ccCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA gagacctaattctaaagcctacaattggacatggctccatccatatctagccCAGCGGTTCCGACTCCTAAAGCATACACGTTTGAATGTTGTTGCCTTTCTTAATGCATTACCCAAAACCCAACATGATGTCAATGCGTTTGTAGTAGACATAAGTGCTCAAACAgtgagtatctgttttatgaaacctaaaagtggggtgatcattatgctcat Alignment from CESAR ccCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA gagacctaattctaaagcctacaattggacatggctccatccatatctagccCAGCGGTTCCGACTCCTAAAGCATACACGTTTGAATGTTGTTGCCTTTCTTAATGCATTACCCAAAACCCAACATGATGTCAATGCGTTTGTAGTAGACATAAGTGCTCAAACAgtgagtatctgttttatgaaacctaaaagtggggtgatcattatgctcat Alignment from Spaln_aa2Genome CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA gagacctaattctaaagcctacaattggacatggctccatccatatctagCCCAGCGGTTCCGACTCCTAAAGCATACACGTTTGAATGTTGTTGCCTTTCTTAATGCATTACCCAAAACCCAACATGATGTCAATGCGTTTGTAGTAGACATAAGTGCTCAAACAgtgagtatctgttttatgaaacctaaaagtggggtgatcattatgctcat Alignment from Spaln_nt2Genome CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA gagacctaattctaaagcctacaattggacatggctccatccatatctagCCCAGCGGTTCCGACTCCTAAAGCATACACGTTTGAATGTTGTTGCCTTTCTTAATGCATTACCCAAAACCCAACATGATGTCAATGCGTTTGTAGTAGACATAAGTGCTCAAACAgtgagtatctgttttatgaaacctaaaagtggggtgatcattatgctcat Alignment from Pairagon CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA gagacctaattctaaagcctacaattggacatggctccatccatatctagCCCAGCGGTTCCGACTCCTAAAGCATACACGTTTGAATGTTGTTGCCTTTCTTAATGCATTACCCAAAACCCAACATGATGTCAATGCGTTTGTAGTAGACATAAGTGCTCAAACAgtgagtatctgttttatgaaacctaaaagtggggtgatcattatgctcat Alignment from Exonerate_protein2genome CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACAAGCACATTACTGTGTTTTTCTGTCAATGGAGTCTTC gagacctaattctaaagcctacaattggacatggctccatccatatctagCCCAGCGGTTCCGACTCCTAAAGCATACACGTTTGAATGTTGTTGCCTTTCTTAATGCATTACCCAAAACCCAACATGATGTCAATGCGTTTGTAGTAGACATAAGTGCTCAAACAGTGAGT---ATCTGTTTTATGAAACCTAAAAGTGGGgtgatcattatgct Alignment from Exonerate_coding2genome CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA gagacctaattctaaagcctacaattggacatggctccatccatatctagCCCAGCGGTTCCGACTCCTAAAGCATACACGTTTGAATGTTGTTGCCTTTCTTAATGCATTACCCAAAACCCAACATGATGTCAATGCGTTTGTAGTAGACATAAGTGCTCAAACAgtgagtatctgttttatgaaacctaaaagtggggtgatcattatgctcat Alignment from GeneWise CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA gagacctaattctaaagcctacaattggacatggctccatccatatctagCCCAGCGGTTCCGACTCCTAAAGCATACACGTTTGAATGTTGTTGCCTTTCTTAATGCATTACCCAAAACCCAACATGATGTCAATGCGTTTGTAGTAGACATAAGTGCTCAAACAgtgagtatctgttttatgaaacctaaaagtggggtgatcattatgctcat #### Nxf1_ID2358_18 --> 2 - 2 Original Alignment tgGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAgg ttaaactctttagcacctcagggcattttgtttttgattttgccttgtagtaGATGGGAAGTCTCGAGACTCTCTACATGCCTTTGCAAGGACATTCATTGCAGTTCCTGCAAGTAATACAgggtaagcagatctgattgattaacaatgataggagtgggtgtaaaaggaca Alignment from CESAR tgGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAgg ttaaactctttagcacctcagggcattttgtttttgattttgccttgtagtaGATGGGAAGTCTCGAGACTCTCTACATGCCTTTGCAAGGACATTCATTGCAGTTCCTGCAAGTAATACAgggtaagcagatctgattgattaacaatgataggagtgggtgtaaaaggaca Alignment from Spaln_aa2Genome TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG ttaaactctttagcacctcagggcattttgtttttgattttgccttgtagTAGATGGGAAGTCTCGAGACTCTCTACATGCCTTTGCAAGGACATTCATTGCAGTTCCTGCAAGTAATACAGGgtaagcagatctgattgattaacaatgataggagtgggtgtaaaaggaca Alignment from Spaln_nt2Genome TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG ttaaactctttagcacctcagggcattttgtttttgattttgccttgtagTAGATGGGAAGTCTCGAGACTCTCTACATGCCTTTGCAAGGACATTCATTGCAGTTCCTGCAAGTAATACAGGgtaagcagatctgattgattaacaatgataggagtgggtgtaaaaggaca Alignment from Pairagon TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG ttaaactctttagcacctcagggcattttgtttttgattttgccttgtagTAGATGGGAAGTCTCGAGACTCTCTACATGCCTTTGCAAGGACATTCATTGCAGTTCCTGCAAGTAATACAGGgtaagcagatctgattgattaacaatgataggagtgggtgtaaaaggaca Alignment from Exonerate_protein2genome TCTTCAAGGAAGTGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG ttaaactctttagcacctcagggcattttgtttttgatTTTGCCTTGTAGTAGATGGGAAGTCTCGAGACTCTCTACATGCCTTTGCAAGGACATTCATTGCAGTTCCTGCAAGTAATACAGGgtaagcagatctgattgattaacaatgataggagtgggtgtaaaaggaca Alignment from Exonerate_coding2genome TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG ttaaactctttagcacctcagggcattttgtttttgattttgccttgtagTAGATGGGAAGTCTCGAGACTCTCTACATGCCTTTGCAAGGACATTCATTGCAGTTCCTGCAAGTAATACAGGgtaagcagatctgattgattaacaatgataggagtgggtgtaaaaggaca Alignment from GeneWise TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG ttaaactctttagcacctcagggcattttgtttttgattttgccttgtagTAGATGGGAAGTCTCGAGACTCTCTACATGCCTTTGCAAGGACATTCATTGCAGTTCCTGCAAGTAATACAGGgtaagcagatctgattgattaacaatgataggagtgggtgtaaaaggaca #### Obfc1_ID10230_6 --> 1 - 0 Original Alignment cAATAAAGACAATTTGGATCTCGCTGGCCTCACGTCTTTGCTGAGTGAGAAAATTAAAGAATTCCTCCAGGAGAAGAAAATGCAAAGCTTCTACCAGCAGGAGTTAGAGACAGTGGAGTCTTTGCAGTCTCTGGCCAGTCGGCCTGTGACCCACAGCACGGGCTCGGACCAA atgtgctagtctgtgtctttcaattcagattattttcttgtcatttttagtAACAAAGACAATCTGGACCTTGCTGGCCTTACCCCTTTACTGAGCATAAGAATTAAAGAGTTTTTGCAGGAGAAGAAGACACGTAGTTTCTACCAAAAGGAGTTAGAGACAGTGCAC---TTGCATTCTTTGGCCAGTCAACCTGTGACCCATAGACCAGGCTCAGACCAGgtaaagagtgtattttctgttagtggtcatcatctaactagtagtcaatg Alignment from CESAR cAATAAAGACAATTTGGATCTCGCTGGCCTCACGTCTTTGCTGAGTGAGAAAATTAAAGAATTCCTCCAGGAGAAGAAAATGCAAAGCTTCTACCAGCAGGAGTTAGAGACAGTGGAGTCTTTGCAGTCTCTGGCCAGTCGGCCTGTGACCCACAGCACGGGCTCGGACCAA atgtgctagtctgtgtctttcaattcagattattttcttgtcatttttagtAACAAAGACAATCTGGACCTTGCTGGCCTTACCCCTTTACTGAGCATAAGAATTAAAGAGTTTTTGCAGGAGAAGAAGACACGTAGTTTCTACCAAAAGGAGTTAGAGACAGTG---CACTTGCATTCTTTGGCCAGTCAACCTGTGACCCATAGACCAGGCTCAGACCAGgtaaagagtgtattttctgttagtggtcatcatctaactagtagtcaatg Alignment from Spaln_aa2Genome CAATAAAGACAATTTGGATCTCGCTGGCCTCACGTCTTTGCTGAGTGAGAAAATTAAAGAATTCCTCCAGGAGAAGAAAATGCAAAGCTTCTACCAGCAGGAGTTAGAGACAGTGGAGTCTTTGCAGTCTCTGGCCAGTCGGCCTGTGACCCACAGCACGGGCTCGGACCAA atgtgctagtctgtgtctttcaattcagattattttcttgtcatttttagTAACAAAGACAATCTGGACCTTGCTGGCCTTACCCCTTTACTGAGCATAAGAATTAAAGAGTTTTTGCAGGAGAAGAAGACACGTAGTTTCTACCAAAAGGAGTTAGAGACAGTG---CACTTGCATTCTTTGGCCAGTCAACCTGTGACCCATAGACCAGGCTCAGACCAGgtaaagagtgtattttctgttagtggtcatcatctaactagtagtcaatg Alignment from Spaln_nt2Genome CAATAAAGACAATTTGGATCTCGCTGGCCTCACGTCTTTGCTGAGTGAGAAAATTAAAGAATTCCTCCAGGAGAAGAAAATGCAAAGCTTCTACCAGCAGGAGTTAGAGACAGTGGAGTCTTTGCAGTCTCTGGCCAGTCGGCCTGTGACCCACAGCACGGGCTCGGACCAA atgtgctagtctgtgtctttcaattcagattattttcttgtcatttttagTAACAAAGACAATCTGGACCTTGCTGGCCTTACCCCTTTACTGAGCATAAGAATTAAAGAGTTTTTGCAGGAGAAGAAGACACGTAGTTTCTACCAAAAGGAGTTAGAGACAGTGCA---CTTGCATTCTTTGGCCAGTCAACCTGTGACCCATAGACCAGGCTCAGACCAGgtaaagagtgtattttctgttagtggtcatcatctaactagtagtcaatg Alignment from Pairagon CAATAAAGACAATTTGGATCTCGCTGGCCTCACGTCTTTGCTGAGTGAGAAAATTAAAGAATTCCTCCAGGAGAAGAAAATGCAAAGCTTCTACCAGCAGGAGTTAGAGACAGTGGAGTCTTTGCAGTCTCTGGCCAGTCGGCCTGTGACCCACAGCACGGGCTCGGACCAA atgtgctagtctgtgtctttcaattcagattattttcttgtcatttttagTAACAAAGACAATCTGGACCTTGCTGGCCTTACCCCTTTACTGAGCATAAGAATTAAAGAGTTTTTGCAGGAGAAGAAGACACGTAGTTTCTACCAAAAGGAGTTAGAGACAGTGCA---CTTGCATTCTTTGGCCAGTCAACCTGTGACCCATAGACCAGGCTCAGACCAGgtaaagagtgtattttctgttagtggtcatcatctaactagtagtcaatg Alignment from Exonerate_protein2genome CAATAAAGACAATTTGGATCTCGCTGGCCTCACGTCTTTGCTGAGTGAGAAAATTAAAGAATTCCTCCAGGAGAAGAAAATGCAAAGCTTCTACCAGCAGGAGTTAGAGACAGTGGAGTCTTTGCAGTCTCTGGCCAGTCGGCCTGTGACCCACAGCACGGGCTCGGACCAA atgtgctagtctgtgtctttcaattcagattattttcttgtcatttttagTAACAAAGACAATCTGGACCTTGCTGGCCTTACCCCTTTACTGAGCATAAGAATTAAAGAGTTTTTGCAGGAGAAGAAGACACGTAGTTTCTACCAAAAGGAGTTAGAGACAGTGCAC---TTGCATTCTTTGGCCAGTCAACCTGTGACCCATAGACCAGGCTCAGACCAGgtaaagagtgtattttctgttagtggtcatcatctaactagtagtcaatg Alignment from Exonerate_coding2genome CAATAAAGACAATTTGGATCTCGCTGGCCTCACGTCTTTGCTGAGTGAGAAAATTAAAGAATTCCTCCAGGAGAAGAAAATGCAAAGCTTCTACCAGCAGGAGTTAGAGACAGTGGAGTCTTTGCAGTCTCTGGCCAGTCGGCCTGTGACCCACAGCACGGGCTCGGACCAAGTGGAG atgtgctagtctgtgtctttcaattcagattattttcttgtcatttttagTAACAAAGACAATCTGGACCTTGCTGGCCTTACCCCTTTACTGAGCATAAGAATTAAAGAGTTTTTGCAGGAGAAGAAGACACGTAGTTTCTACCAAAAGGAGTTAGAGACAGTGCAC---TTGCATTCTTTGGCCAGTCAACCTGTGACCCATAGACCAGGCTCAGACCAGGTAAAGagtgtattttctgttagtggtcatcatctaactagtagtcaatg Alignment from GeneWise CAATAAAGACAATTTGGATCTCGCTGGCCTCACGTCTTTGCTGAGTGAGAAAATTAAAGAATTCCTCCAGGAGAAGAAAATGCAAAGCTTCTACCAGCAGGAGTTAGAGACAGTGGAGTCTTTGCAGTCTCTGGCCAGTCGGCCTGTGACCCACAGCACGGGCTCGGACCAA atgtgctagtctgtgtctttcaattcagattattttcttgtcatttttagTAACAAAGACAATCTGGACCTTGCTGGCCTTACCCCTTTACTGAGCATAAGAATTAAAGAGTTTTTGCAGGAGAAGAAGACACGTAGTTTCTACCAAAAGGAGTTAGAGACAGTGCAC---TTGCATTCTTTGGCCAGTCAACCTGTGACCCATAGACCAGGCTCAGACCAGgtaaagagtgtattttctgttagtggtcatcatctaactagtagtcaatg #### Oosp1_ID3265_2 --> 2 - 0 Original Alignment ccATTAGTCTGCAATGTGCCGACCACTGGTTCCATCTAAGGATCAGGCCTACGATATTTCACAACATTTTTATGGAACCCGATGAAGTGTTTTTAGGAATTGGCTGCCCTGTGACCACTACCTGGCCAAATGATACCTATGAATTTATCTACCGGACTTACTCCTGCGGCATTGCCAATAAA ccagtgtcatgtggtgatcccaaagtaaccttctgaactctgacacccagccATTAGTCTGCAATGTGCTGAACATTGGTTCTATCTAAGGATCAGGTCTACAACATTCCACAATGTCTACATGGAACCTGATGAAGTTTTTTTAGGTATTGGTTGTCCTGTGACTACAACATGGCCAAATGACACCTATGAATTTATCTATAGGACCTACTCTTGTGGCATTGCCAATAAAgtaatgagggagtagctatctcaatagccctctacaatttacatgactag Alignment from CESAR ccATTAGTCTGCAATGTGCCGACCACTGGTTCCATCTAAGGATCAGGCCTACGATATTTCACAACATTTTTATGGAACCCGATGAAGTGTTTTTAGGAATTGGCTGCCCTGTGACCACTACCTGGCCAAATGATACCTATGAATTTATCTACCGGACTTACTCCTGCGGCATTGCCAATAAA ccagtgtcatgtggtgatcccaaagtaaccttctgaactctgacacccagccATTAGTCTGCAATGTGCTGAACATTGGTTCTATCTAAGGATCAGGTCTACAACATTCCACAATGTCTACATGGAACCTGATGAAGTTTTTTTAGGTATTGGTTGTCCTGTGACTACAACATGGCCAAATGACACCTATGAATTTATCTATAGGACCTACTCTTGTGGCATTGCCAATAAAgtaatgagggagtagctatctcaatagccctctacaatttacatgactag Alignment from Spaln_aa2Genome CCATTAGTCTGCAATGTGCCGACCACTGGTTCCATCTAAGGATCAGGCCTACGATATTTCACAACATTTTTATGGAACCCGATGAAGTGTTTTTAGGAATTGGCTGCCCTGTGACCACTACCTGGCCAAATGATACCTATGAATTTATCTACCGGACTTACTCCTGCGGCATTGCCAATAAA ccagtgtcatgtggtgatcccaaagtaaccttctgaactctgacacccagCCATTAGTCTGCAATGTGCTGAACATTGGTTCTATCTAAGGATCAGGTCTACAACATTCCACAATGTCTACATGGAACCTGATGAAGTTTTTTTAGGTATTGGTTGTCCTGTGACTACAACATGGCCAAATGACACCTATGAATTTATCTATAGGACCTACTCTTGTGGCATTGCCAATAAAgtaatgagggagtagctatctcaatagccctctacaatttacatgactag Alignment from Spaln_nt2Genome CCATTAGTCTGCAATGTGCCGACCACTGGTTCCATCTAAGGATCAGGCCTACGATATTTCACAACATTTTTATGGAACCCGATGAAGTGTTTTTAGGAATTGGCTGCCCTGTGACCACTACCTGGCCAAATGATACCTATGAATTTATCTACCGGACTTACTCCTGCGGCATTGCCAATAAA ccagtgtcatgtggtgatcccaaagtaaccttctgaactctgacacccagCCATTAGTCTGCAATGTGCTGAACATTGGTTCTATCTAAGGATCAGGTCTACAACATTCCACAATGTCTACATGGAACCTGATGAAGTTTTTTTAGGTATTGGTTGTCCTGTGACTACAACATGGCCAAATGACACCTATGAATTTATCTATAGGACCTACTCTTGTGGCATTGCCAATAAAgtaatgagggagtagctatctcaatagccctctacaatttacatgactag Alignment from Pairagon CCATTAGTCTGCAATGTGCCGACCACTGGTTCCATCTAAGGATCAGGCCTACGATATTTCACAACATTTTTATGGAACCCGATGAAGTGTTTTTAGGAATTGGCTGCCCTGTGACCACTACCTGGCCAAATGATACCTATGAATTTATCTACCGGACTTACTCCTGCGGCATTGCCAATAAA ccagtgtcatgtggtgatcccaaagtaaccttctgaactctgacacccagCCATTAGTCTGCAATGTGCTGAACATTGGTTCTATCTAAGGATCAGGTCTACAACATTCCACAATGTCTACATGGAACCTGATGAAGTTTTTTTAGGTATTGGTTGTCCTGTGACTACAACATGGCCAAATGACACCTATGAATTTATCTATAGGACCTACTCTTGTGGCATTGCCAATAAAgtaatgagggagtagctatctcaatagccctctacaatttacatgactag Alignment from Exonerate_protein2genome CCATTAGTCTGCAATGTGCCGACCACTGGTTCCATCTAAGGATCAGGCCTACGATATTTCACAACATTTTTATGGAACCCGATGAAGTGTTTTTAGGAATTGGCTGCCCTGTGACCACTACCTGGCCAAATGATACCTATGAATTTATCTACCGGACTTACTCCTGCGGCATTGCCAATAAA ccagtgtcatgtggtgatcccaaagtaaccttctgaactctgacacccagCCATTAGTCTGCAATGTGCTGAACATTGGTTCTATCTAAGGATCAGGTCTACAACATTCCACAATGTCTACATGGAACCTGATGAAGTTTTTTTAGGTATTGGTTGTCCTGTGACTACAACATGGCCAAATGACACCTATGAATTTATCTATAGGACCTACTCTTGTGGCATTGCCAATAAAgtaatgagggagtagctatctcaatagccctctacaatttacatgactag Alignment from Exonerate_coding2genome CCATTAGTCTGCAATGTGCCGACCACTGGTTCCATCTAAGGATCAGGCCTACGATATTTCACAACATTTTTATGGAACCCGATGAAGTGTTTTTAGGAATTGGCTGCCCTGTGACCACTACCTGGCCAAATGATACCTATGAATTTATCTACCGGACTTACTCCTGCGGCATTGCCAATAAAGTTCTTTGTGATGTCACTCTGCTGAAGACGCAACTTACATACATCTCAAA ccagtgtcatgtggtgatcccaaagtaaccttctgaactctgacacccagCCATTAGTCTGCAATGTGCTGAACATTGGTTCTATCTAAGGATCAGGTCTACAACATTCCACAATGTCTACATGGAACCTGATGAAGTTTTTTTAGGTATTGGTTGTCCTGTGACTACAACATGGCCAAATGACACCTATGAATTTATCTATAGGACCTACTCTTGTGGCATTGCCAATAAAGTAATGAGGGAGTAGCTATCTCAATAGCCCTCTACAATTTACATGACTAG Alignment from GeneWise CCATTAGTCTGCAATGTGCCGACCACTGGTTCCATCTAAGGATCAGGCCTACGATATTTCACAACATTTTTATGGAACCCGATGAAGTGTTTTTAGGAATTGGCTGCCCTGTGACCACTACCTGGCCAAATGATACCTATGAATTTATCTACCGGACTTACTCCTGCGGCATTGCCAATAAA ccagtgtcatgtggtgatcccaaagtaaccttctgaactctgacacccagCCATTAGTCTGCAATGTGCTGAACATTGGTTCTATCTAAGGATCAGGTCTACAACATTCCACAATGTCTACATGGAACCTGATGAAGTTTTTTTAGGTATTGGTTGTCCTGTGACTACAACATGGCCAAATGACACCTATGAATTTATCTATAGGACCTACTCTTGTGGCATTGCCAATAAAgtaatgagggagtagctatctcaatagccctctacaatttacatgactag #### Oosp2_ID3257_3 --> 0 - 2 Original Alignment GTTATCTCAAATGAAATCGTCTGTTTTGAAACCGAGATGTACTTTCGTCCAAGGAATTATTGTTTGGAACTTCAGATAGTCCCTTTGCAGTGTTCTGCCTCTcg gggattttttatattgtcctatctcacccctcaccttctgccttctccagGTTATCTCAAACGAAATTGTCTGCTTTGAGACAGAGATGTACTTTCGTCCAAGGAATTACTGTCTGGAACTTCAAATAGTTCCTCTACAGTGCTCCGCCTTTcggtgacttccaatcaacccctctcctgttaagccagagcaagagagagcaa Alignment from CESAR GTTATCTCAAATGAAATCGTCTGTTTTGAAACCGAGATGTACTTTCGTCCAAGGAATTATTGTTTGGAACTTCAGATAGTCCCTTTGCAGTGTTCTGCCTCTcg gggattttttatattgtcctatctcacccctcaccttctgccttctccagGTTATCTCAAACGAAATTGTCTGCTTTGAGACAGAGATGTACTTTCGTCCAAGGAATTACTGTCTGGAACTTCAAATAGTTCCTCTACAGTGCTCCGCCTTTcggtgacttccaatcaacccctctcctgttaagccagagcaagagagagcaa Alignment from Spaln_aa2Genome GTTATCTCAAATGAAATCGTCTGTTTTGAAACCGAGATGTACTTTCGTCCAAGGAATTATTGTTTGGAACTTCAGATAGTCCCTTTGCAGTGTTCTGCCTCTCG gggattttttatattgtcctatctcacccctcaccttctgccttctccagGTTATCTCAAACGAAATTGTCTGCTTTGAGACAGAGATGTACTTTCGTCCAAGGAATTACTGTCTGGAACTTCAAATAGTTCCTCTACAGTGCTCCGCCTTTCGgtgacttccaatcaacccctctcctgttaagccagagcaagagagagcaa Alignment from Spaln_nt2Genome GTTATCTCAAATGAAATCGTCTGTTTTGAAACCGAGATGTACTTTCGTCCAAGGAATTATTGTTTGGAACTTCAGATAGTCCCTTTGCAGTGTTCTGCCTCTCG gggattttttatattgtcctatctcacccctcaccttctgccttctccagGTTATCTCAAACGAAATTGTCTGCTTTGAGACAGAGATGTACTTTCGTCCAAGGAATTACTGTCTGGAACTTCAAATAGTTCCTCTACAGTGCTCCGCCTTTCGgtgacttccaatcaacccctctcctgttaagccagagcaagagagagcaa Alignment from Pairagon GTTATCTCAAATGAAATCGTCTGTTTTGAAACCGAGATGTACTTTCGTCCAAGGAATTATTGTTTGGAACTTCAGATAGTCCCTTTGCAGTGTTCTGCCTCTCG gggattttttatattgtcctatctcacccctcaccttctgccttctccagGTTATCTCAAACGAAATTGTCTGCTTTGAGACAGAGATGTACTTTCGTCCAAGGAATTACTGTCTGGAACTTCAAATAGTTCCTCTACAGTGCTCCGCCTTTCGgtgacttccaatcaacccctctcctgttaagccagagcaagagagagcaa Alignment from Exonerate_protein2genome GTTATCTCAAATGAAATCGTCTGTTTTGAAACCGAGATGTACTTTCGTCCAAGGAATTATTGTTTGGAACTTCAGATAGTCCCTTTGCAGTGTTCTGCCTCTCG gggattttttatattgtcctatctcacccctcaccttctgccttctccagGTTATCTCAAACGAAATTGTCTGCTTTGAGACAGAGATGTACTTTCGTCCAAGGAATTACTGTCTGGAACTTCAAATAGTTCCTCTACAGTGCTCCGCCTTTCGgtgacttccaatcaacccctctcctgttaagccagagcaagagagagcaa Alignment from Exonerate_coding2genome GTTATCTCAAATGAAATCGTCTGTTTTGAAACCGAGATGTACTTTCGTCCAAGGAATTATTGTTTGGAACTTCAGATAGTCCCTTTGCAGTGTTCTGCCTCTCG gggattttttatattgtcctatctcacccctcaccttctgccttctccagGTTATCTCAAACGAAATTGTCTGCTTTGAGACAGAGATGTACTTTCGTCCAAGGAATTACTGTCTGGAACTTCAAATAGTTCCTCTACAGTGCTCCGCCTTTCGgtgacttccaatcaacccctctcctgttaagccagagcaagagagagcaa Alignment from GeneWise GTTATCTCAAATGAAATCGTCTGTTTTGAAACCGAGATGTACTTTCGTCCAAGGAATTATTGTTTGGAACTTCAGATAGTCCCTTTGCAGTGTTCTGCCTCTCG gggattttttatattgtcctatctcacccctcaccttctgccttctccagGTTATCTCAAACGAAATTGTCTGCTTTGAGACAGAGATGTACTTTCGTCCAAGGAATTACTGTCTGGAACTTCAAATAGTTCCTCTACAGTGCTCCGCCTTTCGgtgacttccaatcaacccctctcctgttaagccagagcaagagagagcaa #### Oosp3_ID3271_3 --> 0 - 2 Original Alignment CACGCATTTGATGGAACTATTGTTAATACCTGGCTCACCTATATGCCCAGGAATATATCTATTTATGCTGAGCTTCAGCTTCAGTGTGTCATTCCCag cgaagtaccctcttgcagacacaggacactgtggtttgtcccctcaccagCATGCATTTGACGGTACCCTAGTTAACACCTGGATTGCCTATATGCCCAGAAATATTTCCATTTATGCTGAGCTTCAGCTTCATTCCATTATACCCaggtgagaacaatcatattcaatgactgtggatgtcctaaatcattttcttc Alignment from CESAR CACGCATTTGATGGAACTATTGTTAATACCTGGCTCACCTATATGCCCAGGAATATATCTATTTATGCTGAGCTTCAGCTTCAGTGTGTCATTCCCag cgaagtaccctcttgcagacacaggacactgtggtttgtcccctcaccagCATGCATTTGACGGTACCCTAGTTAACACCTGGATTGCCTATATGCCCAGAAATATTTCCATTTATGCTGAGCTTCAGCTTCATTCCATTATACCCaggtgagaacaatcatattcaatgactgtggatgtcctaaatcattttcttc Alignment from Spaln_aa2Genome CACGCATTTGATGGAACTATTGTTAATACCTGGCTCACCTATATGCCCAGGAATATATCTATTTATGCTGAGCTTCAGCTTCAGTGTGTCATTCCCAG cgaagtaccctcttgcagacacaggacactgtggtttgtcccctcaccagCATGCATTTGACGGTACCCTAGTTAACACCTGGATTGCCTATATGCCCAGAAATATTTCCATTTATGCTGAGCTTCAGCTTCATTCCATTATACCCAGgtgagaacaatcatattcaatgactgtggatgtcctaaatcattttcttc Alignment from Spaln_nt2Genome CACGCATTTGATGGAACTATTGTTAATACCTGGCTCACCTATATGCCCAGGAATATATCTATTTATGCTGAGCTTCAGCTTCAGTGTGTCATTCCCAG cgaagtaccctcttgcagacacaggacactgtggtttgtcccctcaccagCATGCATTTGACGGTACCCTAGTTAACACCTGGATTGCCTATATGCCCAGAAATATTTCCATTTATGCTGAGCTTCAGCTTCATTCCATTATACCCAGgtgagaacaatcatattcaatgactgtggatgtcctaaatcattttcttc Alignment from Pairagon CACGCATTTGATGGAACTATTGTTAATACCTGGCTCACCTATATGCCCAGGAATATATCTATTTATGCTGAGCTTCAGCTTCAGTGTGTCATTCCCAG cgaagtaccctcttgcagacacaggacactgtggtttgtcccctcaccagCATGCATTTGACGGTACCCTAGTTAACACCTGGATTGCCTATATGCCCAGAAATATTTCCATTTATGCTGAGCTTCAGCTTCATTCCATTATACCCAGgtgagaacaatcatattcaatgactgtggatgtcctaaatcattttcttc Alignment from Exonerate_protein2genome CACGCATTTGATGGAACTATTGTTAATACCTGGCTCACCTATATGCCCAGGAATATATCTATTTATGCTGAGCTTCAGCTTCAGTGTGTCATTCCCAG cgaagtaccctcttgcagacacaggacactgtggtttgtcccctcaccagCATGCATTTGACGGTACCCTAGTTAACACCTGGATTGCCTATATGCCCAGAAATATTTCCATTTATGCTGAGCTTCAGCTTCATTCCATTATACCCAGgtgagaacaatcatattcaatgactgtggatgtcctaaatcattttcttc Alignment from Exonerate_coding2genome CACGCATTTGATGGAACTATTGTTAATACCTGGCTCACCTATATGCCCAGGAATATATCTATTTATGCTGAGCTTCAGCTTCAGTGTGTCATTCCCAG cgaagtaccctcttgcagacacaggacactgtggtttgtcccctcaccagCATGCATTTGACGGTACCCTAGTTAACACCTGGATTGCCTATATGCCCAGAAATATTTCCATTTATGCTGAGCTTCAGCTTCATTCCATTATACCCAGgtgagaacaatcatattcaatgactgtggatgtcctaaatcattttcttc Alignment from GeneWise CACGCATTTGATGGAACTATTGTTAATACCTGGCTCACCTATATGCCCAGGAATATATCTATTTATGCTGAGCTTCAGCTTCAGTGTGTCATTCCCAG cgaagtaccctcttgcagacacaggacactgtggtttgtcccctcaccagCATGCATTTGACGGTACCCTAGTTAACACCTGGATTGCCTATATGCCCAGAAATATTTCCATTTATGCTGAGCTTCAGCTTCATTCCATTATACCCAGgtgagaacaatcatattcaatgactgtggatgtcctaaatcattttcttc #### Oosp3_ID3273_5 --> 1 - 0 Original Alignment tGAATCTATTGATGTGGGTAACCTAGACTTCCACCCTCCTCCTCAATGCTGGTTCCTGGTACTGAAGAGATACTGCATTATTTGTGGCCATTTCCATTTCCCAAATAACTGG taatcttagtcctgatgacattacactacccaacatgtctatcatttcagcGAGTCTATTGATGTGGGGAACCTGCACTTCCACCCTCCTCCTCAATGCTGGTTCCTTGTACTGAAAAGGTATTGTGTTATCTGTGGCCATTTCCATTTTCCCAACAACTGGgtaaatcttatccagcatgagccactttagttgaagtgatggccaaagtc Alignment from CESAR tGAATCTATTGATGTGGGTAACCTAGACTTCCACCCTCCTCCTCAATGCTGGTTCCTGGTACTGAAGAGATACTGCATTATTTGTGGCCATTTCCATTTCCCAAATAACTGG taatcttagtcctgatgacattacactacccaacatgtctatcatttcagcGAGTCTATTGATGTGGGGAACCTGCACTTCCACCCTCCTCCTCAATGCTGGTTCCTTGTACTGAAAAGGTATTGTGTTATCTGTGGCCATTTCCATTTTCCCAACAACTGGgtaaatcttatccagcatgagccactttagttgaagtgatggccaaagtc Alignment from Spaln_aa2Genome TGAATCTATTGATGTGGGTAACCTAGACTTCCACCCTCCTCCTCAATGCTGGTTCCTGGTACTGAAGAGATACTGCATTATTTGTGGCCATTTCCATTTCCCAAATAACTGG taatcttagtcctgatgacattacactacccaacatgtctatcatttcagCGAGTCTATTGATGTGGGGAACCTGCACTTCCACCCTCCTCCTCAATGCTGGTTCCTTGTACTGAAAAGGTATTGTGTTATCTGTGGCCATTTCCATTTTCCCAACAACTGGgtaaatcttatccagcatgagccactttagttgaagtgatggccaaagtc Alignment from Spaln_nt2Genome TGAATCTATTGATGTGGGTAACCTAGACTTCCACCCTCCTCCTCAATGCTGGTTCCTGGTACTGAAGAGATACTGCATTATTTGTGGCCATTTCCATTTCCCAAATAACTGG taatcttagtcctgatgacattacactacccaacatgtctatcatttcagCGAGTCTATTGATGTGGGGAACCTGCACTTCCACCCTCCTCCTCAATGCTGGTTCCTTGTACTGAAAAGGTATTGTGTTATCTGTGGCCATTTCCATTTTCCCAACAACTGGgtaaatcttatccagcatgagccactttagttgaagtgatggccaaagtc Alignment from Pairagon TGAATCTATTGATGTGGGTAACCTAGACTTCCACCCTCCTCCTCAATGCTGGTTCCTGGTACTGAAGAGATACTGCATTATTTGTGGCCATTTCCATTTCCCAAATAACTGG taatcttagtcctgatgacattacactacccaacatgtctatcatttcagCGAGTCTATTGATGTGGGGAACCTGCACTTCCACCCTCCTCCTCAATGCTGGTTCCTTGTACTGAAAAGGTATTGTGTTATCTGTGGCCATTTCCATTTTCCCAACAACTGGgtaaatcttatccagcatgagccactttagttgaagtgatggccaaagtc Alignment from Exonerate_protein2genome TGAATCTATTGATGTGGGTAACCTAGACTTCCACCCTCCTCCTCAATGCTGGTTCCTGGTACTGAAGAGATACTGCATTATTTGTGGCCATTTCCATTTCCCAAATAACTGG taatcttagtcctgatgacattacactacccaacatgtctatcatttcagCGAGTCTATTGATGTGGGGAACCTGCACTTCCACCCTCCTCCTCAATGCTGGTTCCTTGTACTGAAAAGGTATTGTGTTATCTGTGGCCATTTCCATTTTCCCAACAACTGGgtaaatcttatccagcatgagccactttagttgaagtgatggccaaagtc Alignment from Exonerate_coding2genome TGAATCTATTGATGTGGGTAACCTAGACTTCCACCCTCCTCCTCAATGCTGGTTCCTGGTACTGAAGAGATACTGCATTATTTGTGGCCATTTCCATTTCCCAAATAACTGG taatcttagtcctgatgacattacactacccaacatgtctatcatttcagCGAGTCTATTGATGTGGGGAACCTGCACTTCCACCCTCCTCCTCAATGCTGGTTCCTTGTACTGAAAAGGTATTGTGTTATCTGTGGCCATTTCCATTTTCCCAACAACTGGgtaaatcttatccagcatgagccactttagttgaagtgatggccaaagtc Alignment from GeneWise TGAATCTATTGATGTGGGTAACCTAGACTTCCACCCTCCTCCTCAATGCTGGTTCCTGGTACTGAAGAGATACTGCATTATTTGTGGCCATTTCCATTTCCCAAATAACTGG taatcttagtcctgatgacattacactacccaacatgtctatcatttcagCGAGTCTATTGATGTGGGGAACCTGCACTTCCACCCTCCTCCTCAATGCTGGTTCCTTGTACTGAAAAGGTATTGTGTTATCTGTGGCCATTTCCATTTTCCCAACAACTGGgtaaatcttatccagcatgagccactttagttgaagtgatggccaaagtc #### Osbp_ID3343_2 --> 1 - 1 Original Alignment gTCCAAGGCAGAGATGAGACACACCTGCCGAGGTACCATCAACCTCGCCACAGCCAACATCACTGTGGAGGACTCTTGCAACTTCATCATCTCCAATGGCGGTGCTCAGACCTACCACTTGAAGGCCAGCTCCGAAGTAGAGCGTCAGCGCTGGGTGACAGCCTTAGAACTGGCCAAGGCCAAGGCTGTGAAGATG---CTGGCCGAATCAg cctaatacttacattgtttggtattgccgtcttctgtcaaaattcctcaggTCCAAGGCAGAAATGCGACACACCTGCCAGGGTACAATTAACCTTGCTACAGCTAATATGAGCGTTGAAGACCCATGCAACTTCATCATCTCCAATGGTAGCGCTCAAACTTACCATCTAAAAGCTAGCTCTGAAGTAGAATGTCAGCATTGGGTAACAGCTCTAGAATTAGCAAGAGCCAAGGCCGTGAAAATCCTAGTGGCTGAATCAggtaagaaacactggggtgggaaggttatgctagtcagatgttgaaatggt Alignment from CESAR gTCCAAGGCAGAGATGAGACACACCTGCCGAGGTACCATCAACCTCGCCACAGCCAACATCACTGTGGAGGACTCTTGCAACTTCATCATCTCCAATGGCGGTGCTCAGACCTACCACTTGAAGGCCAGCTCCGAAGTAGAGCGTCAGCGCTGGGTGACAGCCTTAGAACTGGCCAAGGCCAAGGCTGTGAAGATGCTG---GCCGAATCAg cctaatacttacattgtttggtattgccgtcttctgtcaaaattcctcaggTCCAAGGCAGAAATGCGACACACCTGCCAGGGTACAATTAACCTTGCTACAGCTAATATGAGCGTTGAAGACCCATGCAACTTCATCATCTCCAATGGTAGCGCTCAAACTTACCATCTAAAAGCTAGCTCTGAAGTAGAATGTCAGCATTGGGTAACAGCTCTAGAATTAGCAAGAGCCAAGGCCGTGAAAATCCTAGTGGCTGAATCAggtaagaaacactggggtgggaaggttatgctagtcagatgttgaaatggt Alignment from Spaln_aa2Genome GTCCAAGGCAGAGATGAGACACACCTGCCGAGGTACCATCAACCTCGCCACAGCCAACATCACTGTGGAGGACTCTTGCAACTTCATCATCTCCAATGGCGGTGCTCAGACCTACCACTTGAAGGCCAGCTCCGAAGTAGAGCGTCAGCGCTGGGTGACAGCCTTAGAACTGGCCAAGGCCAAGGCTGTGAAGATGCTG---GCCGAATCAG cctaatacttacattgtttggtattgccgtcttctgtcaaaattcctcagGTCCAAGGCAGAAATGCGACACACCTGCCAGGGTACAATTAACCTTGCTACAGCTAATATGAGCGTTGAAGACCCATGCAACTTCATCATCTCCAATGGTAGCGCTCAAACTTACCATCTAAAAGCTAGCTCTGAAGTAGAATGTCAGCATTGGGTAACAGCTCTAGAATTAGCAAGAGCCAAGGCCGTGAAAATCCTAGTGGCTGAATCAGgtaagaaacactggggtgggaaggttatgctagtcagatgttgaaatggt Alignment from Spaln_nt2Genome GTCCAAGGCAGAGATGAGACACACCTGCCGAGGTACCATCAACCTCGCCACAGCCAACATCACTGTGGAGGACTCTTGCAACTTCATCATCTCCAATGGCGGTGCTCAGACCTACCACTTGAAGGCCAGCTCCGAAGTAGAGCGTCAGCGCTGGGTGACAGCCTTAGAACTGGCCAAGGCCAAGGCTGTGAAGATGCT---GGCCGAATCAG cctaatacttacattgtttggtattgccgtcttctgtcaaaattcctcagGTCCAAGGCAGAAATGCGACACACCTGCCAGGGTACAATTAACCTTGCTACAGCTAATATGAGCGTTGAAGACCCATGCAACTTCATCATCTCCAATGGTAGCGCTCAAACTTACCATCTAAAAGCTAGCTCTGAAGTAGAATGTCAGCATTGGGTAACAGCTCTAGAATTAGCAAGAGCCAAGGCCGTGAAAATCCTAGTGGCTGAATCAGgtaagaaacactggggtgggaaggttatgctagtcagatgttgaaatggt Alignment from Pairagon GTCCAAGGCAGAGATGAGACACACCTGCCGAGGTACCATCAACCTCGCCACAGCCAACATCACTGTGGAGGACTCTTGCAACTTCATCATCTCCAATGGCGGTGCTCAGACCTACCACTTGAAGGCCAGCTCCGAAGTAGAGCGTCAGCGCTGGGTGACAGCCTTAGAACTGGCCAAGGCCAAGGCTGTGAAGATGC---TGGCCGAATCAG cctaatacttacattgtttggtattgccgtcttctgtcaaaattcctcagGTCCAAGGCAGAAATGCGACACACCTGCCAGGGTACAATTAACCTTGCTACAGCTAATATGAGCGTTGAAGACCCATGCAACTTCATCATCTCCAATGGTAGCGCTCAAACTTACCATCTAAAAGCTAGCTCTGAAGTAGAATGTCAGCATTGGGTAACAGCTCTAGAATTAGCAAGAGCCAAGGCCGTGAAAATCCTAGTGGCTGAATCAGgtaagaaacactggggtgggaaggttatgctagtcagatgttgaaatggt Alignment from Exonerate_protein2genome GTCCAAGGCAGAGATGAGACACACCTGCCGAGGTACCATCAACCTCGCCACAGCCAACATCACTGTGGAGGACTCTTGCAACTTCATCATCTCCAATGGCGGTGCTCAGACCTACCACTTGAAGGCCAGCTCCGAAGTAGAGCGTCAGCGCTGGGTGACAGCCTTAGAACTGGCCAAGGCCAAGGCTGTGAAGATGCTG---GCCGAATCAG cctaatacttacattgtttggtattgccgtcttctgtcaaaattcctcagGTCCAAGGCAGAAATGCGACACACCTGCCAGGGTACAATTAACCTTGCTACAGCTAATATGAGCGTTGAAGACCCATGCAACTTCATCATCTCCAATGGTAGCGCTCAAACTTACCATCTAAAAGCTAGCTCTGAAGTAGAATGTCAGCATTGGGTAACAGCTCTAGAATTAGCAAGAGCCAAGGCCGTGAAAATCCTAGTGGCTGAATCAGgtaagaaacactggggtgggaaggttatgctagtcagatgttgaaatggt Alignment from Exonerate_coding2genome GTCCAAGGCAGAGATGAGACACACCTGCCGAGGTACCATCAACCTCGCCACAGCCAACATCACTGTGGAGGACTCTTGCAACTTCATCATCTCCAATGGCGGTGCTCAGACCTACCACTTGAAGGCCAGCTCCGAAGTAGAGCGTCAGCGCTGGGTGACAGCCTTAGAACTGGCCAAGGCCAAGGCTGTGAAGATGCTG---GCCGAATCAG cctaatacttacattgtttggtattgccgtcttctgtcaaaattcctcagGTCCAAGGCAGAAATGCGACACACCTGCCAGGGTACAATTAACCTTGCTACAGCTAATATGAGCGTTGAAGACCCATGCAACTTCATCATCTCCAATGGTAGCGCTCAAACTTACCATCTAAAAGCTAGCTCTGAAGTAGAATGTCAGCATTGGGTAACAGCTCTAGAATTAGCAAGAGCCAAGGCCGTGAAAATCCTAGTGGCTGAATCAGgtaagaaacactggggtgggaaggttatgctagtcagatgttgaaatggt Alignment from GeneWise GTCCAAGGCAGAGATGAGACACACCTGCCGAGGTACCATCAACCTCGCCACAGCCAACATCACTGTGGAGGACTCTTGCAACTTCATCATCTCCAATGGCGGTGCTCAGACCTACCACTTGAAGGCCAGCTCCGAAGTAGAGCGTCAGCGCTGGGTGACAGCCTTAGAACTGGCCAAGGCCAAGGCTGTGAAGATGCTG---GCCGAATCAG cctaatacttacattgtttggtattgccgtcttctgtcaaaattcctcagGTCCAAGGCAGAAATGCGACACACCTGCCAGGGTACAATTAACCTTGCTACAGCTAATATGAGCGTTGAAGACCCATGCAACTTCATCATCTCCAATGGTAGCGCTCAAACTTACCATCTAAAAGCTAGCTCTGAAGTAGAATGTCAGCATTGGGTAACAGCTCTAGAATTAGCAAGAGCCAAGGCCGTGAAAATCCTAGTGGCTGAATCAGgtaagaaacactggggtgggaaggttatgctagtcagatgttgaaatggt #### Osbp_ID3348_7 --> 0 - 0 Original Alignment TACAAGCATCAGCTGGAGGAGACCAAGAAGGAAAAGAGAACCAGAATACCATATAAGCCAAACTACAGCCTCAACTTGTGGAGCATCATGAAGAACTGCATTGGAAAGGAGCTCTCTAAGATCCCAATGCCG aacagataatttgctgttgttgcaaaaactctcttggcattgtcacatagTACAAGCATCAGCTTGAGGAGACCAAAAAGGAAAAGCGAACAAGAATTCCATATAAGCCAAACTACAGCATCAACCTGTGGAGCATCATGAAGAACTGCATTGGGAAGGAGCTCACGAAGATCTCAATGCCAgtgagtggctcggaacttccccttctttttcaacattaatatgcaaatct Alignment from CESAR TACAAGCATCAGCTGGAGGAGACCAAGAAGGAAAAGAGAACCAGAATACCATATAAGCCAAACTACAGCCTCAACTTGTGGAGCATCATGAAGAACTGCATTGGAAAGGAGCTCTCTAAGATCCCAATGCCG aacagataatttgctgttgttgcaaaaactctcttggcattgtcacatagTACAAGCATCAGCTTGAGGAGACCAAAAAGGAAAAGCGAACAAGAATTCCATATAAGCCAAACTACAGCATCAACCTGTGGAGCATCATGAAGAACTGCATTGGGAAGGAGCTCACGAAGATCTCAATGCCAgtgagtggctcggaacttccccttctttttcaacattaatatgcaaatct Alignment from Spaln_aa2Genome TACAAGCATCAGCTGGAGGAGACCAAGAAGGAAAAGAGAACCAGAATACCATATAAGCCAAACTACAGCCTCAACTTGTGGAGCATCATGAAGAACTGCATTGGAAAGGAGCTCTCTAAGATCCCAATGCCG aacagataatttgctgttgttgcaaaaactctcttggcattgtcacatagTACAAGCATCAGCTTGAGGAGACCAAAAAGGAAAAGCGAACAAGAATTCCATATAAGCCAAACTACAGCATCAACCTGTGGAGCATCATGAAGAACTGCATTGGGAAGGAGCTCACGAAGATCTCAATGCCAgtgagtggctcggaacttccccttctttttcaacattaatatgcaaatct Alignment from Spaln_nt2Genome TACAAGCATCAGCTGGAGGAGACCAAGAAGGAAAAGAGAACCAGAATACCATATAAGCCAAACTACAGCCTCAACTTGTGGAGCATCATGAAGAACTGCATTGGAAAGGAGCTCTCTAAGATCCCAATGCCG aacagataatttgctgttgttgcaaaaactctcttggcattgtcacatagTACAAGCATCAGCTTGAGGAGACCAAAAAGGAAAAGCGAACAAGAATTCCATATAAGCCAAACTACAGCATCAACCTGTGGAGCATCATGAAGAACTGCATTGGGAAGGAGCTCACGAAGATCTCAATGCCAgtgagtggctcggaacttccccttctttttcaacattaatatgcaaatct Alignment from Pairagon TACAAGCATCAGCTGGAGGAGACCAAGAAGGAAAAGAGAACCAGAATACCATATAAGCCAAACTACAGCCTCAACTTGTGGAGCATCATGAAGAACTGCATTGGAAAGGAGCTCTCTAAGATCCCAATGCCG aacagataatttgctgttgttgcaaaaactctcttggcattgtcacatagTACAAGCATCAGCTTGAGGAGACCAAAAAGGAAAAGCGAACAAGAATTCCATATAAGCCAAACTACAGCATCAACCTGTGGAGCATCATGAAGAACTGCATTGGGAAGGAGCTCACGAAGATCTCAATGCCAgtgagtggctcggaacttccccttctttttcaacattaatatgcaaatct Alignment from Exonerate_protein2genome TACAAGCATCAGCTGGAGGAGACCAAGAAGGAAAAGAGAACCAGAATACCATATAAGCCAAACTACAGCCTCAACTTGTGGAGCATCATGAAGAACTGCATTGGAAAGGAGCTCTCTAAGATCCCAATGCCG aacagataatttgctgttgttgcaaaaactctcttggcattgtcacatagTACAAGCATCAGCTTGAGGAGACCAAAAAGGAAAAGCGAACAAGAATTCCATATAAGCCAAACTACAGCATCAACCTGTGGAGCATCATGAAGAACTGCATTGGGAAGGAGCTCACGAAGATCTCAATGCCAgtgagtggctcggaacttccccttctttttcaacattaatatgcaaatct Alignment from Exonerate_coding2genome TACAAGCATCAGCTGGAGGAGACCAAGAAGGAAAAGAGAACCAGAATACCATATAAGCCAAACTACAGCCTCAACTTGTGGAGCATCATGAAGAACTGCATTGGAAAGGAGCTCTCTAAGATCCCAATGCCG aacagataatttgctgttgttgcaaaaactctcttggcattgtcacatagTACAAGCATCAGCTTGAGGAGACCAAAAAGGAAAAGCGAACAAGAATTCCATATAAGCCAAACTACAGCATCAACCTGTGGAGCATCATGAAGAACTGCATTGGGAAGGAGCTCACGAAGATCTCAATGCCAgtgagtggctcggaacttccccttctttttcaacattaatatgcaaatct Alignment from GeneWise TACAAGCATCAGCTGGAGGAGACCAAGAAGGAAAAGAGAACCAGAATACCATATAAGCCAAACTACAGCCTCAACTTGTGGAGCATCATGAAGAACTGCATTGGAAAGGAGCTCTCTAAGATCCCAATGCCG aacagataatttgctgttgttgcaaaaactctcttggcattgtcacatagTACAAGCATCAGCTTGAGGAGACCAAAAAGGAAAAGCGAACAAGAATTCCATATAAGCCAAACTACAGCATCAACCTGTGGAGCATCATGAAGAACTGCATTGGGAAGGAGCTCACGAAGATCTCAATGCCAgtgagtggctcggaacttccccttctttttcaacattaatatgcaaatct #### Osbp_ID3351_10 --> 2 - 0 Original Alignment gtACTATCCACTGCATTTTCCACTCAACTGGGCACCATTACACTTGGAAAAAAGTTACCACAACAGTACACAACATTATTGTGGGCAAGTTGTGGATAGATCAG gaagcaactgatacagacaaaagtaactgaccccttcccttgctctacaggaACTATCCACTGTATTTTCCACTCGACAGGGCACCATTACGGTTGGAGGAAAGTCACCACAACAGTACACAATCTTATAGTAGGCAAATTGTGGATAGACCAGgtacactgattcatctaaagttcagagtttaaagagtacaaaagggcttt Alignment from CESAR gtACTATCCACTGCATTTTCCACTCAACTGGGCACCATTACACTTGGAAAAAAGTTACCACAACAGTACACAACATTATTGTGGGCAAGTTGTGGATAGATCAG gaagcaactgatacagacaaaagtaactgaccccttcccttgctctacaggaACTATCCACTGTATTTTCCACTCGACAGGGCACCATTACGGTTGGAGGAAAGTCACCACAACAGTACACAATCTTATAGTAGGCAAATTGTGGATAGACCAGgtacactgattcatctaaagttcagagtttaaagagtacaaaagggcttt Alignment from Spaln_aa2Genome CTTGGTACTATCCACTGCATTTTCCACTCAACTGGGCACCATTACACTTGGAAAAAAGTTACCACAACAGTACACAACATTATTGTGGGCAAGTTGTGGATAGATCAG gcaactgatacagacaaaagtaactgaccccttcccttgctctaca gGAACTATCCACTGTATTTTCCACTCGACAGGGCACCATTACGGTTGGAGGAAAGTCACCACAACAGTACACAATCTTATAGTAGGCAAATTGTGGATAGACCAGgtacactgattcatctaaagttcagagtttaaagagtacaaaagggcttt Alignment from Spaln_nt2Genome GTACTATCCACTGCATTTTCCACTCAACTGGGCACCATTACACTTGGAAAAAAGTTACCACAACAGTACACAACATTATTGTGGGCAAGTTGTGGATAGATCAG gaagcaactgatacagacaaaagtaactgaccccttcccttgctctacagGAACTATCCACTGTATTTTCCACTCGACAGGGCACCATTACGGTTGGAGGAAAGTCACCACAACAGTACACAATCTTATAGTAGGCAAATTGTGGATAGACCAGgtacactgattcatctaaagttcagagtttaaagagtacaaaagggcttt Alignment from Pairagon GTACTATCCACTGCATTTTCCACTCAACTGGGCACCATTACACTTGGAAAAAAGTTACCACAACAGTACACAACATTATTGTGGGCAAGTTGTGGATAGATCAG gaagcaactgatacagacaaaagtaactgaccccttcccttgctctacagGAACTATCCACTGTATTTTCCACTCGACAGGGCACCATTACGGTTGGAGGAAAGTCACCACAACAGTACACAATCTTATAGTAGGCAAATTGTGGATAGACCAGgtacactgattcatctaaagttcagagtttaaagagtacaaaagggcttt Alignment from Exonerate_protein2genome GTACTATCCACTGCATTTTCCACTCAACTGGGCACCATTACACTTGGAAAAAAGTTACCACAACAGTACACAACATTATTGTGGGCAAGTTGTGGATAGATCAG gaagcaactgatacagacaaaagtaactgaccccttcccttgctctacagGAACTATCCACTGTATTTTCCACTCGACAGGGCACCATTACGGTTGGAGGAAAGTCACCACAACAGTACACAATCTTATAGTAGGCAAATTGTGGATAGACCAGgtacactgattcatctaaagttcagagtttaaagagtacaaaagggcttt Alignment from Exonerate_coding2genome GTACTATCCACTGCATTTTCCACTCAACTGGGCACCATTACACTTGGAAAAAAGTTACCACAACAGTACACAACATTATTGTGGGCAAGTTGTGGATAGATCAG gaagcaactgatacagacaaaagtaactgaccccttcccttgctctacagGAACTATCCACTGTATTTTCCACTCGACAGGGCACCATTACGGTTGGAGGAAAGTCACCACAACAGTACACAATCTTATAGTAGGCAAATTGTGGATAGACCAGgtacactgattcatctaaagttcagagtttaaagagtacaaaagggcttt Alignment from GeneWise TTGGTACTATCCACTGCATTTTCCACTCAACTGGGCACCATTACACTTGGAAAAAAGTTACCACAACAGTACACAACATTATTGTGGGCAAGTTGTGGATAGATCAG gaagcaactgatacagacaaaagtaactgaccccttcccttgctctacagGA---ACTATCCACTGTATTTTCCACTCGACAGGGCACCATTACGGTTGGAGGAAAGTCACCACAACAGTACACAATCTTATAGTAGGCAAATTGTGGATAGACCAGgtacactgattcatctaaagttcagagtttaaagagtacaaaagggcttt #### Osbp_ID3352_11 --> 0 - 0 Original Alignment TCTGGTGAGATTGACATTGTAAATCACAAGACAGGAGACAAGTGTAATCTTAAATTTGTTCCTTATAGCTACTTCTCTCGGGATGTA---------GCAAGAAAG ttggtacaatctacatggaactactaattgactctgcatcctccccacagGCAAGCGAGATTGATATAGTAAACCACAAATCAGGTGATAAGTGCAATCTTAAATTTGTTCCTTATACTTACTTCTCTCGAGATTTGGTGAGAAAGGCAAGAAGGgtagggataagagtttttgtctagaactgcattcatccttatgaatgtat Alignment from CESAR TCTGGTGAGATTGACATTGTAAATCACAAGACAGGAGACAAGTGTAATCTTAAATTTGTTCCTTATAGCTACTTCTCTCGGGATGTAGCAAGAAAG ttggtacaatctacatggaactactaattgactctgcatcctccccacagGCAAGCGAGATTGATATAGTAAACCACAAATCAGGTGATAAGTGCAATCTTAAATTTGTTCCTTATACTTACTTCTCTCGAGATTTGGTGAGAAAGgcaagaagggtagggataagagtttttgtctagaactgcattcatccttatgaatgtat Alignment from Spaln_aa2Genome TCTGGTGAGATTGACATTGTAAATCACAAGACAGGAGACAAGTGTAATCTTAAATTTGTTCCTTATAGCTACTTCTCTCGGGATGTAGCAAGAAAG ttggtacaatctacatggaactactaattgactctgcatcctccccacagGCAAGCGAGATTGATATAGTAAACCACAAATCAGGTGATAAGTGCAATCTTAAATTTGTTCCTTATACTTACTTCTCTCGAGATTTGGTGAGAAAGgcaagaagggtagggataagagtttttgtctagaactgcattcatccttatgaatgtat Alignment from Spaln_nt2Genome TCTGGTGAGATTGACATTGTAAATCACAAGACAGGAGACAAGTGTAATCTTAAATTTGTTCCTTATAGCTACTTCTCTCGGGATGTAGCAAGAAAG ttggtacaatctacatggaactactaattgactctgcatcctccccacagGCAAGCGAGATTGATATAGTAAACCACAAATCAGGTGATAAGTGCAATCTTAAATTTGTTCCTTATACTTACTTCTCTCGAGATTTGGTGAGAAAGgcaagaagggtagggataagagtttttgtctagaactgcattcatccttatgaatgtat Alignment from Pairagon TCTGGTGAGATTGACATTGTAAATCACAAGACAGGAGACAAGTGTAATCTTAAATTTGTTCCTTATAGCTACTTCTCTCGGGATGTAGCAAGAAAG ttggtacaatctacatggaactactaattgactctgcatcctccccacagGCAAGCGAGATTGATATAGTAAACCACAAATCAGGTGATAAGTGCAATCTTAAATTTGTTCCTTATACTTACTTCTCTCGAGATTTGGTGAGAAAGgcaagaagggtagggataagagtttttgtctagaactgcattcatccttatgaatgtat Alignment from Exonerate_protein2genome TCTGGTGAGATTGACATTGTAAATCACAAGACAGGAGACAAGTGTAATCTTAAATTTGTTCCTTATAGCTACTTCTCTCGGGATGTAGCAAGAAAG ttggtacaatctacatggaactactaattgactctgcatcctccccacagGCAAGCGAGATTGATATAGTAAACCACAAATCAGGTGATAAGTGCAATCTTAAATTTGTTCCTTATACTTACTTCTCTCGAGATTTGGTGAGAAAGgcaagaagggtagggataagagtttttgtctagaactgcattcatccttatgaatgtat Alignment from Exonerate_coding2genome TCTGGTGAGATTGACATTGTAAATCACAAGACAGGAGACAAGTGTAATCTTAAATTTGTTCCTTATAGCTACTTCTCTCGGGATGTAGCAAGAAAG ttggtacaatctacatggaactactaattgactctgcatcctccccacagGCAAGCGAGATTGATATAGTAAACCACAAATCAGGTGATAAGTGCAATCTTAAATTTGTTCCTTATACTTACTTCTCTCGAGATTTGGTGAGAAAGgcaagaagggtagggataagagtttttgtctagaactgcattcatccttatgaatgtat Alignment from GeneWise TCTGGTGAGATTGACATTGTAAATCACAAGACAGGAGACAAGTGTAATCTTAAATTTGTTCCTTATAGCTACTTCTCTCGGGATGTAGCAAGAAAG--------- ttggtacaatctacatggaactactaattgactctgcatcctccccacagGCAAGCGAGATTGATATAGTAAACCACAAATCAGGTGATAAGTGCAATCTTAAATTTGTTCCTTATACTTACTTCTCTCGAGATTTGGTGAGAAAGGCAAGAAGGgtagggataagagtttttgtctagaactgcattcatccttatgaatgtat #### Ostf1_ID4421_9 --> 2 - 1 Original Alignment gtGCGAGGACAGACTTGAGAAACAATGAGAAGAAGCTGGCCTTGGACATGGCCACCAACGCTGCCTGTGCATCGCTCCTGAAGAAGAAGCAGCAGGGAACAg caagggactgtttaacacacatattacctctctgtccctgtcacgggcaggtGCAAGAACAGACTTGAGAAAC---AAGGAGAAACTAGCCTTGGACATGGCCACTAATGCTGCCTGTGCATCACTCTTGAAGAAGAAACAGCAAGAAACCggtgagttccaactttatgaatataaaaacaagctaaacctgataacagga Alignment from CESAR gtGCGAGGACAGACTTGAGAAACAATGAGAAGAAGCTGGCCTTGGACATGGCCACCAACGCTGCCTGTGCATCGCTCCTGAAGAAGAAGCAGCAGGGAACAg caagggactgtttaacacacatattacctctctgtccctgtcacgggcaggtGCAAGAACAGACTTGAGAAACAAGGAG---AAACTAGCCTTGGACATGGCCACTAATGCTGCCTGTGCATCACTCTTGAAGAAGAAACAGCAAGAAACCggtgagttccaactttatgaatataaaaacaagctaaacctgataacagga Alignment from Spaln_aa2Genome GTGCGAGGACAGACTTGAGAAACAATGAGAAGAAGCTGGCCTTGGACATGGCCACCAACGCTGCCTGTGCATCGCTCCTGAAGAAGAAGCAGCAGGGAACAG caagggactgtttaacacacatattacctctctgtccctgtcacgggcagGTGCAAGAACAGACTTGAGAAACAAGGAG---AAACTAGCCTTGGACATGGCCACTAATGCTGCCTGTGCATCACTCTTGAAGAAGAAACAGCAAGAAACCGgtgagttccaactttatgaatataaaaacaagctaaacctgataacagga Alignment from Spaln_nt2Genome GTGCGAGGACAGACTTGAGAAACAATGAGAAGAAGCTGGCCTTGGACATGGCCACCAACGCTGCCTGTGCATCGCTCCTGAAGAAGAAGCAGCAGGGAACAG caagggactgtttaacacacatattacctctctgtccctgtcacgggcagGTGCAAGAACAGACTTGAGAAACA---AGGAGAAACTAGCCTTGGACATGGCCACTAATGCTGCCTGTGCATCACTCTTGAAGAAGAAACAGCAAGAAACCGgtgagttccaactttatgaatataaaaacaagctaaacctgataacagga Alignment from Pairagon GTGCGAGGACAGACTTGAGAAACAATGAGAAGAAGCTGGCCTTGGACATGGCCACCAACGCTGCCTGTGCATCGCTCCTGAAGAAGAAGCAGCAGGGAACAG caagggactgtttaacacacatattacctctctgtccctgtcacgggcagGTGCAAGAACAGACTTGAGAAACA---AGGAGAAACTAGCCTTGGACATGGCCACTAATGCTGCCTGTGCATCACTCTTGAAGAAGAAACAGCAAGAAACCGgtgagttccaactttatgaatataaaaacaagctaaacctgataacagga Alignment from Exonerate_protein2genome GTGCGAGGACAGACTTGAGAAACAATGAGAAGAAGCTGGCCTTGGACATGGCCACCAACGCTGCCTGTGCATCGCTCCTGAAGAAGAAGCAGCAGGGAACAG caagggactgtttaacacacatattacctctctgtccctgtcacgggcagGTGCAAGAACAGACTTGAGAAACAAGGAG---AAACTAGCCTTGGACATGGCCACTAATGCTGCCTGTGCATCACTCTTGAAGAAGAAACAGCAAGAAACCGgtgagttccaactttatgaatataaaaacaagctaaacctgataacagga Alignment from Exonerate_coding2genome GTGCGAGGACAGACTTGAGAAACAATGAGAAGAAGCTGGCCTTGGACATGGCCACCAACGCTGCCTGTGCATCGCTCCTGAAGAAGAAGCAGCAGGGAACAG caagggactgtttaacacacatattacctctctgtccctgtcacgggcagGTGCAAGAACAGACTTGAGAAACAAGGAG---AAACTAGCCTTGGACATGGCCACTAATGCTGCCTGTGCATCACTCTTGAAGAAGAAACAGCAAGAAACCGgtgagttccaactttatgaatataaaaacaagctaaacctgataacagga Alignment from GeneWise GTGCGAGGACAGACTTGAGAAACAATGAGAAGAAGCTGGCCTTGGACATGGCCACCAACGCTGCCTGTGCATCGCTCCTGAAGAAGAAGCAGCAGGGAACAG caagggactgtttaacacacatattacctctctgtccctgtcacgggcagGTGCAAGAACAGACTTGAGAAACAAGGAGAAA---CTAGCCTTGGACATGGCCACTAATGCTGCCTGTGCATCACTCTTGAAGAAGAAACAGCAAGAAACCGgtgagttccaactttatgaatataaaaacaagctaaacctgataacagga #### Ostf1_ID4423_7 --> 2 - 0 Original Alignment acATAGTGGAGGTTCTGTTTACTCAGCCGAATGTGGAGCTGAAC---CAGCAG gtagaaatgctccctagaaatagttgcatctttgatcctctccctttcagatATAGTGGAGGTGCTGTTTACTCAACCGAATGTGGAATTGAACCAGCAGCAAgtgaggtgaaatatcccttcatagtgttgattacttcacagtgttgatta Alignment from CESAR acATAGTGGAGGTTCTGTTTACTCAGCCGAATGTGGAGCTGAACCAGCAG--- gtagaaatgctccctagaaatagttgcatctttgatcctctccctttcagatATAGTGGAGGTGCTGTTTACTCAACCGAATGTGGAATTGAACCAGCAGCAAgtgaggtgaaatatcccttcatagtgttgattacttcacagtgttgatta Alignment from Spaln_aa2Genome ACATAGTGGAGGTTCTGTTTACTCAGCCGAATGTGGAGCTGAAC---CAGCAG gtagaaatgctccctagaaatagttgcatctttgatcctctccctttcagATATAGTGGAGGTGCTGTTTACTCAACCGAATGTGGAATTGAACCAGCAGCAAgtgaggtgaaatatcccttcatagtgttgattacttcacagtgttgatta Alignment from Spaln_nt2Genome ACATAGTGGAGGTTCTGTTTACTCAGCCGAATGTGGAGCTGAACCAGCAG--- gtagaaatgctccctagaaatagttgcatctttgatcctctccctttcagATATAGTGGAGGTGCTGTTTACTCAACCGAATGTGGAATTGAACCAGCAGCAAgtgaggtgaaatatcccttcatagtgttgattacttcacagtgttgatta Alignment from Pairagon ACATAGTGGAGGTTCTGTTTACTCAGCCGAATGTGGAGCTGAACCAGCAG--- gtagaaatgctccctagaaatagttgcatctttgatcctctccctttcagATATAGTGGAGGTGCTGTTTACTCAACCGAATGTGGAATTGAACCAGCAGCAAgtgaggtgaaatatcccttcatagtgttgattacttcacagtgttgatta Alignment from Exonerate_protein2genome ACATAGTGGAGGTTCTGTTTACTCAGCCGAATGTGGAGCTGAAC---CAGCAG gtagaaatgctccctagaaatagttgcatctttgatcctctccctttcagATATAGTGGAGGTGCTGTTTACTCAACCGAATGTGGAATTGAACCAGCAGCAAgtgaggtgaaatatcccttcatagtgttgattacttcacagtgttgatta Alignment from Exonerate_coding2genome ACATAGTGGAGGTTCTGTTTACTCAGCCGAATGTGGAGCTGAAC---CAGCAG gtagaaatgctccctagaaatagttgcatctttgatcctctccctttcagATATAGTGGAGGTGCTGTTTACTCAACCGAATGTGGAATTGAACCAGCAGCAAgtgaggtgaaatatcccttcatagtgttgattacttcacagtgttgatta Alignment from GeneWise ACATAGTGGAGGTTCTGTTTACTCAGCCGAATGTGGAGCTGAACCAGCAGAAT gtagaaatgctccctagaaatagttgcatctttgatcctctccctttcagATATAGTGGAGGTGCTGTTTACTCAACCGAATGTGGAATTGAACCAGCAGCAAgtgaggtgaaatatcccttcatagtgttgattacttcacagtgttgatta #### Otub1_ID2063_3 --> 0 - 0 Original Alignment ATTGCTGTGCAGAATCCTCTGGTGTCAGAGCGGCTGGAACTCTCAGTCCTGTACAAGGAGTATGCTGAGGATGACAACATCTACCAACAGAAGATCAAG cttattgtaagtgttaggcctaactttcagcaaagcgttttctctcttagATTGCTGTGCAAAATCCTCTTGTGTCAGAACGTTTGGAGCTTTCTGTTCTTTGCAAGGAATATGCTGAGGATGACAACATCTACCAGCAGAAGATTAAAgtgaggcaggaggataagtgtgggcctcttcaaatccccgctgcttgtca Alignment from CESAR ATTGCTGTGCAGAATCCTCTGGTGTCAGAGCGGCTGGAACTCTCAGTCCTGTACAAGGAGTATGCTGAGGATGACAACATCTACCAACAGAAGATCAAG cttattgtaagtgttaggcctaactttcagcaaagcgttttctctcttagATTGCTGTGCAAAATCCTCTTGTGTCAGAACGTTTGGAGCTTTCTGTTCTTTGCAAGGAATATGCTGAGGATGACAACATCTACCAGCAGAAGATTAAAgtgaggcaggaggataagtgtgggcctcttcaaatccccgctgcttgtca Alignment from Spaln_aa2Genome ATTGCTGTGCAGAATCCTCTGGTGTCAGAGCGGCTGGAACTCTCAGTCCTGTACAAGGAGTATGCTGAGGATGACAACATCTACCAACAGAAGATCAAG cttattgtaagtgttaggcctaactttcagcaaagcgttttctctcttagATTGCTGTGCAAAATCCTCTTGTGTCAGAACGTTTGGAGCTTTCTGTTCTTTGCAAGGAATATGCTGAGGATGACAACATCTACCAGCAGAAGATTAAAgtgaggcaggaggataagtgtgggcctcttcaaatccccgctgcttgtca Alignment from Spaln_nt2Genome ATTGCTGTGCAGAATCCTCTGGTGTCAGAGCGGCTGGAACTCTCAGTCCTGTACAAGGAGTATGCTGAGGATGACAACATCTACCAACAGAAGATCAAG cttattgtaagtgttaggcctaactttcagcaaagcgttttctctcttagATTGCTGTGCAAAATCCTCTTGTGTCAGAACGTTTGGAGCTTTCTGTTCTTTGCAAGGAATATGCTGAGGATGACAACATCTACCAGCAGAAGATTAAAgtgaggcaggaggataagtgtgggcctcttcaaatccccgctgcttgtca Alignment from Pairagon ATTGCTGTGCAGAATCCTCTGGTGTCAGAGCGGCTGGAACTCTCAGTCCTGTACAAGGAGTATGCTGAGGATGACAACATCTACCAACAGAAGATCAAG cttattgtaagtgttaggcctaactttcagcaaagcgttttctctcttagATTGCTGTGCAAAATCCTCTTGTGTCAGAACGTTTGGAGCTTTCTGTTCTTTGCAAGGAATATGCTGAGGATGACAACATCTACCAGCAGAAGATTAAAgtgaggcaggaggataagtgtgggcctcttcaaatccccgctgcttgtca Alignment from Exonerate_protein2genome ATTGCTGTGCAGAATCCTCTGGTGTCAGAGCGGCTGGAACTCTCAGTCCTGTACAAGGAGTATGCTGAGGATGACAACATCTACCAACAGAAGATCAAG cttattgtaagtgttaggcctaactttcagcaaagcgttttctctcttagATTGCTGTGCAAAATCCTCTTGTGTCAGAACGTTTGGAGCTTTCTGTTCTTTGCAAGGAATATGCTGAGGATGACAACATCTACCAGCAGAAGATTAAAgtgaggcaggaggataagtgtgggcctcttcaaatccccgctgcttgtca Alignment from Exonerate_coding2genome ATTGCTGTGCAGAATCCTCTGGTGTCAGAGCGGCTGGAACTCTCAGTCCTGTACAAGGAGTATGCTGAGGATGACAACATCTACCAACAGAAGATCAAG cttattgtaagtgttaggcctaactttcagcaaagcgttttctctcttagATTGCTGTGCAAAATCCTCTTGTGTCAGAACGTTTGGAGCTTTCTGTTCTTTGCAAGGAATATGCTGAGGATGACAACATCTACCAGCAGAAGATTAAAgtgaggcaggaggataagtgtgggcctcttcaaatccccgctgcttgtca Alignment from GeneWise ATTGCTGTGCAGAATCCTCTGGTGTCAGAGCGGCTGGAACTCTCAGTCCTGTACAAGGAGTATGCTGAGGATGACAACATCTACCAACAGAAGATCAAG cttattgtaagtgttaggcctaactttcagcaaagcgttttctctcttagATTGCTGTGCAAAATCCTCTTGTGTCAGAACGTTTGGAGCTTTCTGTTCTTTGCAAGGAATATGCTGAGGATGACAACATCTACCAGCAGAAGATTAAAgtgaggcaggaggataagtgtgggcctcttcaaatccccgctgcttgtca #### Otub1_ID2064_2 --> 2 - 0 Original Alignment gtGTTAACTGTTTGGCCTATGATGAAGCCATTATGGCTCAGCAGGACCGAATTCAGCAAGAG attgggaatgtcataggaaaactggattgatataagtcttttctcaacaggtGTTAATTGTTTAGCATATGATGAAAGTATTATGGCTCAGCAAGACCGAATTCAGCAAGAGgtaagtcagggcagaaagtagaagggatgttggtaactgaggacaatcgg Alignment from CESAR gtGTTAACTGTTTGGCCTATGATGAAGCCATTATGGCTCAGCAGGACCGAATTCAGCAAGAG attgggaatgtcataggaaaactggattgatataagtcttttctcaacaggtGTTAATTGTTTAGCATATGATGAAAGTATTATGGCTCAGCAAGACCGAATTCAGCAAGAGgtaagtcagggcagaaagtagaagggatgttggtaactgaggacaatcgg Alignment from Spaln_aa2Genome GTGTTAACTGTTTGGCCTATGATGAAGCCATTATGGCTCAGCAGGACCGAATTCAGCAAGAG attgggaatgtcataggaaaactggattgatataagtcttttctcaacagGTGTTAATTGTTTAGCATATGATGAAAGTATTATGGCTCAGCAAGACCGAATTCAGCAAGAGgtaagtcagggcagaaagtagaagggatgttggtaactgaggacaatcgg Alignment from Spaln_nt2Genome GTGTTAACTGTTTGGCCTATGATGAAGCCATTATGGCTCAGCAGGACCGAATTCAGCAAGAG attgggaatgtcataggaaaactggattgatataagtcttttctcaacagGTGTTAATTGTTTAGCATATGATGAAAGTATTATGGCTCAGCAAGACCGAATTCAGCAAGAGgtaagtcagggcagaaagtagaagggatgttggtaactgaggacaatcgg Alignment from Pairagon GTGTTAACTGTTTGGCCTATGATGAAGCCATTATGGCTCAGCAGGACCGAATTCAGCAAGAG attgggaatgtcataggaaaactggattgatataagtcttttctcaacagGTGTTAATTGTTTAGCATATGATGAAAGTATTATGGCTCAGCAAGACCGAATTCAGCAAGAGgtaagtcagggcagaaagtagaagggatgttggtaactgaggacaatcgg Alignment from Exonerate_protein2genome GTGTTAACTGTTTGGCCTATGATGAAGCCATTATGGCTCAGCAGGACCGAATTCAGCAAGAG attgggaatgtcataggaaaactggattgatataagtcttttctcaacagGTGTTAATTGTTTAGCATATGATGAAAGTATTATGGCTCAGCAAGACCGAATTCAGCAAGAGgtaagtcagggcagaaagtagaagggatgttggtaactgaggacaatcgg Alignment from Exonerate_coding2genome GTGTTAACTGTTTGGCCTATGATGAAGCCATTATGGCTCAGCAGGACCGAATTCAGCAAGAG attgggaatgtcataggaaaactggattgatataagtcttttctcaacagGTGTTAATTGTTTAGCATATGATGAAAGTATTATGGCTCAGCAAGACCGAATTCAGCAAGAGgtaagtcagggcagaaagtagaagggatgttggtaactgaggacaatcgg Alignment from GeneWise GTGTTAACTGTTTGGCCTATGATGAAGCCATTATGGCTCAGCAGGACCGAATTCAGCAAGAG attgggaatgtcataggaaaactggattgatataagtcttttctcaacagGTGTTAATTGTTTAGCATATGATGAAAGTATTATGGCTCAGCAAGACCGAATTCAGCAAGAGgtaagtcagggcagaaagtagaagggatgttggtaactgaggacaatcgg #### Ovol1_ID1085_3 --> 0 - 1 Original Alignment GTGACCTTGGGGGACAGTCCAAATGGAGACCTTTTTACCTGCCACATCTGCCAGAAGTCCTTCACCCACCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGACGTCAAGAGGCACCTCTGCACTTACTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTg tagtagttaatttttaaaagatatgtcatgtaaatgccttattcctgcagGTAACCTTGGGTGACAGTCCTAATGGAGATCTTTTTACTTGTCACATCTGCCAGAAGTCCTTTACTGATCAGCGCATGCTGAATCGACACATGAAGTGTCACAATGATGTCAAGAGGCACCTCTGCACTTATTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTTCGAACCCACACTggtgcgatgaatggggatgccccttgctcgtcaagccccagaacctgataa Alignment from CESAR GTGACCTTGGGGGACAGTCCAAATGGAGACCTTTTTACCTGCCACATCTGCCAGAAGTCCTTCACCCACCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGACGTCAAGAGGCACCTCTGCACTTACTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTg tagtagttaatttttaaaagatatgtcatgtaaatgccttattcctgcagGTAACCTTGGGTGACAGTCCTAATGGAGATCTTTTTACTTGTCACATCTGCCAGAAGTCCTTTACTGATCAGCGCATGCTGAATCGACACATGAAGTGTCACAATGATGTCAAGAGGCACCTCTGCACTTATTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTTCGAACCCACACTggtgcgatgaatggggatgccccttgctcgtcaagccccagaacctgataa Alignment from Spaln_aa2Genome GTGACCTTGGGGGACAGTCCAAATGGAGACCTTTTTACCTGCCACATCTGCCAGAAGTCCTTCACCCACCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGACGTCAAGAGGCACCTCTGCACTTACTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTG tagtagttaatttttaaaagatatgtcatgtaaatgccttattcctgcagGTAACCTTGGGTGACAGTCCTAATGGAGATCTTTTTACTTGTCACATCTGCCAGAAGTCCTTTACTGATCAGCGCATGCTGAATCGACACATGAAGTGTCACAATGATGTCAAGAGGCACCTCTGCACTTATTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTTCGAACCCACACTGgtgcgatgaatggggatgccccttgctcgtcaagccccagaacctgataa Alignment from Spaln_nt2Genome GTGACCTTGGGGGACAGTCCAAATGGAGACCTTTTTACCTGCCACATCTGCCAGAAGTCCTTCACCCACCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGACGTCAAGAGGCACCTCTGCACTTACTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTG tagtagttaatttttaaaagatatgtcatgtaaatgccttattcctgcagGTAACCTTGGGTGACAGTCCTAATGGAGATCTTTTTACTTGTCACATCTGCCAGAAGTCCTTTACTGATCAGCGCATGCTGAATCGACACATGAAGTGTCACAATGATGTCAAGAGGCACCTCTGCACTTATTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTTCGAACCCACACTGgtgcgatgaatggggatgccccttgctcgtcaagccccagaacctgataa Alignment from Pairagon GTGACCTTGGGGGACAGTCCAAATGGAGACCTTTTTACCTGCCACATCTGCCAGAAGTCCTTCACCCACCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGACGTCAAGAGGCACCTCTGCACTTACTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTG tagtagttaatttttaaaagatatgtcatgtaaatgccttattcctgcagGTAACCTTGGGTGACAGTCCTAATGGAGATCTTTTTACTTGTCACATCTGCCAGAAGTCCTTTACTGATCAGCGCATGCTGAATCGACACATGAAGTGTCACAATGATGTCAAGAGGCACCTCTGCACTTATTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTTCGAACCCACACTGgtgcgatgaatggggatgccccttgctcgtcaagccccagaacctgataa Alignment from Exonerate_protein2genome GTGACCTTGGGGGACAGTCCAAATGGAGACCTTTTTACCTGCCACATCTGCCAGAAGTCCTTCACCCACCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGACGTCAAGAGGCACCTCTGCACTTACTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTG tagtagttaatttttaaaagatatgtcatgtaaatgccttattcctgcagGTAACCTTGGGTGACAGTCCTAATGGAGATCTTTTTACTTGTCACATCTGCCAGAAGTCCTTTACTGATCAGCGCATGCTGAATCGACACATGAAGTGTCACAATGATGTCAAGAGGCACCTCTGCACTTATTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTTCGAACCCACACTGgtgcgatgaatggggatgccccttgctcgtcaagccccagaacctgataa Alignment from Exonerate_coding2genome GTGACCTTGGGGGACAGTCCAAATGGAGACCTTTTTACCTGCCACATCTGCCAGAAGTCCTTCACCCACCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGACGTCAAGAGGCACCTCTGCACTTACTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTG tagtagttaatttttaaaagatatgtcatgtaaatgccttattcctgcagGTAACCTTGGGTGACAGTCCTAATGGAGATCTTTTTACTTGTCACATCTGCCAGAAGTCCTTTACTGATCAGCGCATGCTGAATCGACACATGAAGTGTCACAATGATGTCAAGAGGCACCTCTGCACTTATTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTTCGAACCCACACTGgtgcgatgaatggggatgccccttgctcgtcaagccccagaacctgataa Alignment from GeneWise GTGACCTTGGGGGACAGTCCAAATGGAGACCTTTTTACCTGCCACATCTGCCAGAAGTCCTTCACCCACCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGACGTCAAGAGGCACCTCTGCACTTACTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTG tagtagttaatttttaaaagatatgtcatgtaaatgccttattcctgcagGTAACCTTGGGTGACAGTCCTAATGGAGATCTTTTTACTTGTCACATCTGCCAGAAGTCCTTTACTGATCAGCGCATGCTGAATCGACACATGAAGTGTCACAATGATGTCAAGAGGCACCTCTGCACTTATTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTTCGAACCCACACTGgtgcgatgaatggggatgccccttgctcgtcaagccccagaacctgataa #### Pacs1_ID879_15 --> 0 - 2 Original Alignment TACGTGGCTGAATTGCTTCAAGACCAGAGGAAGCCTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAGGCAGTGCTGTCCGCCCTTCTCACTAGGATTCAGCGCta gtctggactttagctagctattcaacatatcctctttctgtcttttgcagTATGTGGCCAAACTGCTTCAGGATCAAAGGAAGCCTGTGGTGTGTGCATGCTCGCCAGTAGAGGTCCAGGCTGTTCTCTCGGCTCTTCTCACAAGGATCCAGCGAtagtaagcggctgtgtctacagaggtattgtgcactccagcaccctgtgact Alignment from CESAR TACGTGGCTGAATTGCTTCAAGACCAGAGGAAGCCTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAGGCAGTGCTGTCCGCCCTTCTCACTAGGATTCAGCGCta gtctggactttagctagctattcaacatatcctctttctgtcttttgcagTATGTGGCCAAACTGCTTCAGGATCAAAGGAAGCCTGTGGTGTGTGCATGCTCGCCAGTAGAGGTCCAGGCTGTTCTCTCGGCTCTTCTCACAAGGATCCAGCGAtagtaagcggctgtgtctacagaggtattgtgcactccagcaccctgtgact Alignment from Spaln_aa2Genome TACGTGGCTGAATTGCTTCAAGACCAGAGGAAGCCTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAGGCAGTGCTGTCCGCCCTTCTCACTAGGATTCAGCGCTA gtctggactttagctagctattcaacatatcctctttctgtcttttgcagTATGTGGCCAAACTGCTTCAGGATCAAAGGAAGCCTGTGGTGTGTGCATGCTCGCCAGTAGAGGTCCAGGCTGTTCTCTCGGCTCTTCTCACAAGGATCCAGCGATAgtaagcggctgtgtctacagaggtattgtgcactccagcaccctgtgact Alignment from Spaln_nt2Genome TACGTGGCTGAATTGCTTCAAGACCAGAGGAAGCCTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAGGCAGTGCTGTCCGCCCTTCTCACTAGGATTCAGCGCTA gtctggactttagctagctattcaacatatcctctttctgtcttttgcagTATGTGGCCAAACTGCTTCAGGATCAAAGGAAGCCTGTGGTGTGTGCATGCTCGCCAGTAGAGGTCCAGGCTGTTCTCTCGGCTCTTCTCACAAGGATCCAGCGATAgtaagcggctgtgtctacagaggtattgtgcactccagcaccctgtgact Alignment from Pairagon TACGTGGCTGAATTGCTTCAAGACCAGAGGAAGCCTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAGGCAGTGCTGTCCGCCCTTCTCACTAGGATTCAGCGCTA gtctggactttagctagctattcaacatatcctctttctgtcttttgcagTATGTGGCCAAACTGCTTCAGGATCAAAGGAAGCCTGTGGTGTGTGCATGCTCGCCAGTAGAGGTCCAGGCTGTTCTCTCGGCTCTTCTCACAAGGATCCAGCGATAgtaagcggctgtgtctacagaggtattgtgcactccagcaccctgtgact Alignment from Exonerate_protein2genome TACGTGGCTGAATTGCTTCAAGACCAGAGGAAGCCTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAGGCAGTGCTGTCCGCCCTTCTCACTAGGATTCAGCGCTA gtctggactttagctagctattcaacatatcctctttctgtcttttgcagTATGTGGCCAAACTGCTTCAGGATCAAAGGAAGCCTGTGGTGTGTGCATGCTCGCCAGTAGAGGTCCAGGCTGTTCTCTCGGCTCTTCTCACAAGGATCCAGCGATAgtaagcggctgtgtctacagaggtattgtgcactccagcaccctgtgact Alignment from Exonerate_coding2genome TACGTGGCTGAATTGCTTCAAGACCAGAGGAAGCCTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAGGCAGTGCTGTCCGCCCTTCTCACTAGGATTCAGCGCTA gtctggactttagctagctattcaacatatcctctttctgtcttttgcagTATGTGGCCAAACTGCTTCAGGATCAAAGGAAGCCTGTGGTGTGTGCATGCTCGCCAGTAGAGGTCCAGGCTGTTCTCTCGGCTCTTCTCACAAGGATCCAGCGATAgtaagcggctgtgtctacagaggtattgtgcactccagcaccctgtgact Alignment from GeneWise TACGTGGCTGAATTGCTTCAAGACCAGAGGAAGCCTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAGGCAGTGCTGTCCGCCCTTCTCACTAGGATTCAGCGCTA gtctggactttagctagctattcaacatatcctctttctgtcttttgcagTATGTGGCCAAACTGCTTCAGGATCAAAGGAAGCCTGTGGTGTGTGCATGCTCGCCAGTAGAGGTCCAGGCTGTTCTCTCGGCTCTTCTCACAAGGATCCAGCGATAgtaagcggctgtgtctacagaggtattgtgcactccagcaccctgtgact #### Pank1_ID6983_6 --> 0 - 0 Original Alignment AATATTGACAGAGTTGTGTTTGTTGGGAACTTTCTCAGAATCAATATGGTCTCAATGAAGTTGCTAGCATATGCCATGGACTTTTGGTCTAAAGGACAGCTGAAAGCACTGTTTTTGGAACATGAG tggggtcattgcctgattgattctcagcttttgaactttttcaacactagAATATTGACAGGGTTGTGTTTGTTGGGAACTTTCTCAGGATCAATATGGTCTCAATGAAGTTACTTGCATATGGCATGGACTTTTGGTCAAAGGGAATGTCAAGAGCACTGTTCCTGGAACATGAGgtatgggaggcccataaggctgcatcatctgtattacttataggatatac Alignment from CESAR AATATTGACAGAGTTGTGTTTGTTGGGAACTTTCTCAGAATCAATATGGTCTCAATGAAGTTGCTAGCATATGCCATGGACTTTTGGTCTAAAGGACAGCTGAAAGCACTGTTTTTGGAACATGAG tggggtcattgcctgattgattctcagcttttgaactttttcaacactagAATATTGACAGGGTTGTGTTTGTTGGGAACTTTCTCAGGATCAATATGGTCTCAATGAAGTTACTTGCATATGGCATGGACTTTTGGTCAAAGGGAATGTCAAGAGCACTGTTCCTGGAACATGAGgtatgggaggcccataaggctgcatcatctgtattacttataggatatac Alignment from Spaln_aa2Genome AATATTGACAGAGTTGTGTTTGTTGGGAACTTTCTCAGAATCAATATGGTCTCAATGAAGTTGCTAGCATATGCCATGGACTTTTGGTCTAAAGGACAGCTGAAAGCACTGTTTTTGGAACATGAG tggggtcattgcctgattgattctcagcttttgaactttttcaacactagAATATTGACAGGGTTGTGTTTGTTGGGAACTTTCTCAGGATCAATATGGTCTCAATGAAGTTACTTGCATATGGCATGGACTTTTGGTCAAAGGGAATGTCAAGAGCACTGTTCCTGGAACATGAGgtatgggaggcccataaggctgcatcatctgtattacttataggatatac Alignment from Spaln_nt2Genome AATATTGACAGAGTTGTGTTTGTTGGGAACTTTCTCAGAATCAATATGGTCTCAATGAAGTTGCTAGCATATGCCATGGACTTTTGGTCTAAAGGACAGCTGAAAGCACTGTTTTTGGAACATGAG tggggtcattgcctgattgattctcagcttttgaactttttcaacactagAATATTGACAGGGTTGTGTTTGTTGGGAACTTTCTCAGGATCAATATGGTCTCAATGAAGTTACTTGCATATGGCATGGACTTTTGGTCAAAGGGAATGTCAAGAGCACTGTTCCTGGAACATGAGgtatgggaggcccataaggctgcatcatctgtattacttataggatatac Alignment from Pairagon AATATTGACAGAGTTGTGTTTGTTGGGAACTTTCTCAGAATCAATATGGTCTCAATGAAGTTGCTAGCATATGCCATGGACTTTTGGTCTAAAGGACAGCTGAAAGCACTGTTTTTGGAACATGAG tggggtcattgcctgattgattctcagcttttgaactttttcaacactagAATATTGACAGGGTTGTGTTTGTTGGGAACTTTCTCAGGATCAATATGGTCTCAATGAAGTTACTTGCATATGGCATGGACTTTTGGTCAAAGGGAATGTCAAGAGCACTGTTCCTGGAACATGAGgtatgggaggcccataaggctgcatcatctgtattacttataggatatac Alignment from Exonerate_protein2genome AATATTGACAGAGTTGTGTTTGTTGGGAACTTTCTCAGAATCAATATGGTCTCAATGAAGTTGCTAGCATATGCCATGGACTTTTGGTCTAAAGGACAGCTGAAAGCACTGTTTTTGGAACATGAG tggggtcattgcctgattgattctcagcttttgaactttttcaacactagAATATTGACAGGGTTGTGTTTGTTGGGAACTTTCTCAGGATCAATATGGTCTCAATGAAGTTACTTGCATATGGCATGGACTTTTGGTCAAAGGGAATGTCAAGAGCACTGTTCCTGGAACATGAGgtatgggaggcccataaggctgcatcatctgtattacttataggatatac Alignment from Exonerate_coding2genome AATATTGACAGAGTTGTGTTTGTTGGGAACTTTCTCAGAATCAATATGGTCTCAATGAAGTTGCTAGCATATGCCATGGACTTTTGGTCTAAAGGACAGCTGAAAGCACTGTTTTTGGAACATGAG tggggtcattgcctgattgattctcagcttttgaactttttcaacactagAATATTGACAGGGTTGTGTTTGTTGGGAACTTTCTCAGGATCAATATGGTCTCAATGAAGTTACTTGCATATGGCATGGACTTTTGGTCAAAGGGAATGTCAAGAGCACTGTTCCTGGAACATGAGgtatgggaggcccataaggctgcatcatctgtattacttataggatatac Alignment from GeneWise AATATTGACAGAGTTGTGTTTGTTGGGAACTTTCTCAGAATCAATATGGTCTCAATGAAGTTGCTAGCATATGCCATGGACTTTTGGTCTAAAGGACAGCTGAAAGCACTGTTTTTGGAACATGAG tggggtcattgcctgattgattctcagcttttgaactttttcaacactagAATATTGACAGGGTTGTGTTTGTTGGGAACTTTCTCAGGATCAATATGGTCTCAATGAAGTTACTTGCATATGGCATGGACTTTTGGTCAAAGGGAATGTCAAGAGCACTGTTCCTGGAACATGAGgtatgggaggcccataaggctgcatcatctgtattacttataggatatac #### Pank1_ID6986_4 --> 1 - 2 Original Alignment tCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGCGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAag atgggaacaagtccttggcttggtcaccttctttttttttttcttttcagtCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGTGATAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAaggtacgtatcatctgatttgaagcaagcaaacaaccacacatagaagatgc Alignment from CESAR tCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGCGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAag atgggaacaagtccttggcttggtcaccttctttttttttttcttttcagtCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGTGATAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAaggtacgtatcatctgatttgaagcaagcaaacaaccacacatagaagatgc Alignment from Spaln_aa2Genome TCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGCGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAG atgggaacaagtccttggcttggtcaccttctttttttttttcttttcagTCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGTGATAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAGgtacgtatcatctgatttgaagcaagcaaacaaccacacatagaagatgc Alignment from Spaln_nt2Genome TCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGCGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAG atgggaacaagtccttggcttggtcaccttctttttttttttcttttcagTCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGTGATAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAGgtacgtatcatctgatttgaagcaagcaaacaaccacacatagaagatgc Alignment from Pairagon TCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGCGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAG atgggaacaagtccttggcttggtcaccttctttttttttttcttttcagTCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGTGATAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAGgtacgtatcatctgatttgaagcaagcaaacaaccacacatagaagatgc Alignment from Exonerate_protein2genome TCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGCGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAG atgggaacaagtccttggcttggtcaccttctttttttttttcttttcagTCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGTGATAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAGgtacgtatcatctgatttgaagcaagcaaacaaccacacatagaagatgc Alignment from Exonerate_coding2genome TCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGCGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAG atgggaacaagtccttggcttggtcaccttctttttttttttcttttcagTCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGTGATAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAGgtacgtatcatctgatttgaagcaagcaaacaaccacacatagaagatgc Alignment from GeneWise TCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGCGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAG atgggaacaagtccttggcttggtcaccttctttttttttttcttttcagTCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGTGATAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAGgtacgtatcatctgatttgaagcaagcaaacaaccacacatagaagatgc #### Pank1_ID6988_3 --> 0 - 2 Original Alignment ATTGCGGACCTGCAGCTGCATAAACTGGATGAGCTGGACTGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTCGAAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAACCCGTACCCTATGTTGCTGGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTACAAAAGAGTGACGGGGACCag tctacatggagtaattaatcttgcacagatgttgctcttcatcttcccagATCGCGGACCTCCAATTGCATAAACTGGATGAGCTGGACTGCTTGATTCAGGGCCTTCTATATGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTTGAAAACCCAACAAATCTCGAGTTGTGTCAAAAAAAACCATACTGTTTGGATAATCCATACCCCATGTTGCTTGTCAACATGGGCTCAGGTGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTATAAGAGAGTGATGGGGACCaggtgggcaaagtctcaaccaggagagctgtaagagaggacttctgctccag Alignment from CESAR ATTGCGGACCTGCAGCTGCATAAACTGGATGAGCTGGACTGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTCGAAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAACCCGTACCCTATGTTGCTGGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTACAAAAGAGTGACGGGGACCag tctacatggagtaattaatcttgcacagatgttgctcttcatcttcccagATCGCGGACCTCCAATTGCATAAACTGGATGAGCTGGACTGCTTGATTCAGGGCCTTCTATATGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTTGAAAACCCAACAAATCTCGAGTTGTGTCAAAAAAAACCATACTGTTTGGATAATCCATACCCCATGTTGCTTGTCAACATGGGCTCAGGTGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTATAAGAGAGTGATGGGGACCaggtgggcaaagtctcaaccaggagagctgtaagagaggacttctgctccag Alignment from Spaln_aa2Genome ATTGCGGACCTGCAGCTGCATAAACTGGATGAGCTGGACTGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTCGAAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAACCCGTACCCTATGTTGCTGGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTACAAAAGAGTGACGGGGACCAG tctacatggagtaattaatcttgcacagatgttgctcttcatcttcccagATCGCGGACCTCCAATTGCATAAACTGGATGAGCTGGACTGCTTGATTCAGGGCCTTCTATATGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTTGAAAACCCAACAAATCTCGAGTTGTGTCAAAAAAAACCATACTGTTTGGATAATCCATACCCCATGTTGCTTGTCAACATGGGCTCAGGTGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTATAAGAGAGTGATGGGGACCAGgtgggcaaagtctcaaccaggagagctgtaagagaggacttctgctccag Alignment from Spaln_nt2Genome ATTGCGGACCTGCAGCTGCATAAACTGGATGAGCTGGACTGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTCGAAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAACCCGTACCCTATGTTGCTGGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTACAAAAGAGTGACGGGGACCAG tctacatggagtaattaatcttgcacagatgttgctcttcatcttcccagATCGCGGACCTCCAATTGCATAAACTGGATGAGCTGGACTGCTTGATTCAGGGCCTTCTATATGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTTGAAAACCCAACAAATCTCGAGTTGTGTCAAAAAAAACCATACTGTTTGGATAATCCATACCCCATGTTGCTTGTCAACATGGGCTCAGGTGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTATAAGAGAGTGATGGGGACCAGgtgggcaaagtctcaaccaggagagctgtaagagaggacttctgctccag Alignment from Pairagon ATTGCGGACCTGCAGCTGCATAAACTGGATGAGCTGGACTGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTCGAAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAACCCGTACCCTATGTTGCTGGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTACAAAAGAGTGACGGGGACCAG tctacatggagtaattaatcttgcacagatgttgctcttcatcttcccagATCGCGGACCTCCAATTGCATAAACTGGATGAGCTGGACTGCTTGATTCAGGGCCTTCTATATGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTTGAAAACCCAACAAATCTCGAGTTGTGTCAAAAAAAACCATACTGTTTGGATAATCCATACCCCATGTTGCTTGTCAACATGGGCTCAGGTGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTATAAGAGAGTGATGGGGACCAGgtgggcaaagtctcaaccaggagagctgtaagagaggacttctgctccag Alignment from Exonerate_protein2genome ATTGCGGACCTGCAGCTGCATAAACTGGATGAGCTGGACTGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTCGAAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAACCCGTACCCTATGTTGCTGGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTACAAAAGAGTGACGGGGACCAG tctacatggagtaattaatcttgcacagatgttgctcttcatcttcccagATCGCGGACCTCCAATTGCATAAACTGGATGAGCTGGACTGCTTGATTCAGGGCCTTCTATATGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTTGAAAACCCAACAAATCTCGAGTTGTGTCAAAAAAAACCATACTGTTTGGATAATCCATACCCCATGTTGCTTGTCAACATGGGCTCAGGTGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTATAAGAGAGTGATGGGGACCAGgtgggcaaagtctcaaccaggagagctgtaagagaggacttctgctccag Alignment from Exonerate_coding2genome ATTGCGGACCTGCAGCTGCATAAACTGGATGAGCTGGACTGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTCGAAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAACCCGTACCCTATGTTGCTGGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTACAAAAGAGTGACGGGGACCAG tctacatggagtaattaatcttgcacagatgttgctcttcatcttcccagATCGCGGACCTCCAATTGCATAAACTGGATGAGCTGGACTGCTTGATTCAGGGCCTTCTATATGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTTGAAAACCCAACAAATCTCGAGTTGTGTCAAAAAAAACCATACTGTTTGGATAATCCATACCCCATGTTGCTTGTCAACATGGGCTCAGGTGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTATAAGAGAGTGATGGGGACCAGgtgggcaaagtctcaaccaggagagctgtaagagaggacttctgctccag Alignment from GeneWise ATTGCGGACCTGCAGCTGCATAAACTGGATGAGCTGGACTGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTCGAAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAACCCGTACCCTATGTTGCTGGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTACAAAAGAGTGACGGGGACCAG tctacatggagtaattaatcttgcacagatgttgctcttcatcttcccagATCGCGGACCTCCAATTGCATAAACTGGATGAGCTGGACTGCTTGATTCAGGGCCTTCTATATGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTTGAAAACCCAACAAATCTCGAGTTGTGTCAAAAAAAACCATACTGTTTGGATAATCCATACCCCATGTTGCTTGTCAACATGGGCTCAGGTGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTATAAGAGAGTGATGGGGACCAGgtgggcaaagtctcaaccaggagagctgtaagagaggacttctgctccag #### Papss2_ID6708_4 --> 0 - 1 Original Alignment GATCGTGAGAATGCCCGAAAAATCCACGAATCAGCAGGACTCCCGTTCTTTGAGATCTTTGTAGATGCGCCTTTAAATATCTGTGAAAGCCGAGACGTAAAAGGACTCTACAAACGAGCCCGAGCAGGAGAGATTAAAg atacccctcctatttctctccttgttttagtgttgctctctcctctccagGATCGTGAGAATGCTCGAAAAATCCATGAATCAGCAGGACTCCCATTTTTTGAGATATTTGTAGATGCACCTTTAAATATCTGCGAAAGCCGGGATGTGAAAGGACTCTACAAACATGCTCGAGCAGGTGAGATTAAAggtgggtaagtaaccacaagcacctccagaaattctcacccctgctgtctt Alignment from CESAR GATCGTGAGAATGCCCGAAAAATCCACGAATCAGCAGGACTCCCGTTCTTTGAGATCTTTGTAGATGCGCCTTTAAATATCTGTGAAAGCCGAGACGTAAAAGGACTCTACAAACGAGCCCGAGCAGGAGAGATTAAAg atacccctcctatttctctccttgttttagtgttgctctctcctctccagGATCGTGAGAATGCTCGAAAAATCCATGAATCAGCAGGACTCCCATTTTTTGAGATATTTGTAGATGCACCTTTAAATATCTGCGAAAGCCGGGATGTGAAAGGACTCTACAAACATGCTCGAGCAGGTGAGATTAAAggtgggtaagtaaccacaagcacctccagaaattctcacccctgctgtctt Alignment from Spaln_aa2Genome GATCGTGAGAATGCCCGAAAAATCCACGAATCAGCAGGACTCCCGTTCTTTGAGATCTTTGTAGATGCGCCTTTAAATATCTGTGAAAGCCGAGACGTAAAAGGACTCTACAAACGAGCCCGAGCAGGAGAGATTAAAG atacccctcctatttctctccttgttttagtgttgctctctcctctccagGATCGTGAGAATGCTCGAAAAATCCATGAATCAGCAGGACTCCCATTTTTTGAGATATTTGTAGATGCACCTTTAAATATCTGCGAAAGCCGGGATGTGAAAGGACTCTACAAACATGCTCGAGCAGGTGAGATTAAAGgtgggtaagtaaccacaagcacctccagaaattctcacccctgctgtctt Alignment from Spaln_nt2Genome GATCGTGAGAATGCCCGAAAAATCCACGAATCAGCAGGACTCCCGTTCTTTGAGATCTTTGTAGATGCGCCTTTAAATATCTGTGAAAGCCGAGACGTAAAAGGACTCTACAAACGAGCCCGAGCAGGAGAGATTAAAG atacccctcctatttctctccttgttttagtgttgctctctcctctccagGATCGTGAGAATGCTCGAAAAATCCATGAATCAGCAGGACTCCCATTTTTTGAGATATTTGTAGATGCACCTTTAAATATCTGCGAAAGCCGGGATGTGAAAGGACTCTACAAACATGCTCGAGCAGGTGAGATTAAAGgtgggtaagtaaccacaagcacctccagaaattctcacccctgctgtctt Alignment from Pairagon GATCGTGAGAATGCCCGAAAAATCCACGAATCAGCAGGACTCCCGTTCTTTGAGATCTTTGTAGATGCGCCTTTAAATATCTGTGAAAGCCGAGACGTAAAAGGACTCTACAAACGAGCCCGAGCAGGAGAGATTAAAG atacccctcctatttctctccttgttttagtgttgctctctcctctccagGATCGTGAGAATGCTCGAAAAATCCATGAATCAGCAGGACTCCCATTTTTTGAGATATTTGTAGATGCACCTTTAAATATCTGCGAAAGCCGGGATGTGAAAGGACTCTACAAACATGCTCGAGCAGGTGAGATTAAAGgtgggtaagtaaccacaagcacctccagaaattctcacccctgctgtctt Alignment from Exonerate_protein2genome GATCGTGAGAATGCCCGAAAAATCCACGAATCAGCAGGACTCCCGTTCTTTGAGATCTTTGTAGATGCGCCTTTAAATATCTGTGAAAGCCGAGACGTAAAAGGACTCTACAAACGAGCCCGAGCAGGAGAGATTAAAG atacccctcctatttctctccttgttttagtgttgctctctcctctccagGATCGTGAGAATGCTCGAAAAATCCATGAATCAGCAGGACTCCCATTTTTTGAGATATTTGTAGATGCACCTTTAAATATCTGCGAAAGCCGGGATGTGAAAGGACTCTACAAACATGCTCGAGCAGGTGAGATTAAAGgtgggtaagtaaccacaagcacctccagaaattctcacccctgctgtctt Alignment from Exonerate_coding2genome GATCGTGAGAATGCCCGAAAAATCCACGAATCAGCAGGACTCCCGTTCTTTGAGATCTTTGTAGATGCGCCTTTAAATATCTGTGAAAGCCGAGACGTAAAAGGACTCTACAAACGAGCCCGAGCAGGAGAGATTAAAG atacccctcctatttctctccttgttttagtgttgctctctcctctccagGATCGTGAGAATGCTCGAAAAATCCATGAATCAGCAGGACTCCCATTTTTTGAGATATTTGTAGATGCACCTTTAAATATCTGCGAAAGCCGGGATGTGAAAGGACTCTACAAACATGCTCGAGCAGGTGAGATTAAAGgtgggtaagtaaccacaagcacctccagaaattctcacccctgctgtctt Alignment from GeneWise GATCGTGAGAATGCCCGAAAAATCCACGAATCAGCAGGACTCCCGTTCTTTGAGATCTTTGTAGATGCGCCTTTAAATATCTGTGAAAGCCGAGACGTAAAAGGACTCTACAAACGAGCCCGAGCAGGAGAGATTAAAG atacccctcctatttctctccttgttttagtgttgctctctcctctccagGATCGTGAGAATGCTCGAAAAATCCATGAATCAGCAGGACTCCCATTTTTTGAGATATTTGTAGATGCACCTTTAAATATCTGCGAAAGCCGGGATGTGAAAGGACTCTACAAACATGCTCGAGCAGGTGAGATTAAAGgtgggtaagtaaccacaagcacctccagaaattctcacccctgctgtctt #### Papss2_ID6709_5 --> 2 - 0 Original Alignment ggTTTACAGGCATCGATTCTGACTATGAGAAACCTGAAACTCCAGAGTGTGTGCTGAAGACCAACCTGTCTTCAGTAAGCGACTGTGTGCAACAGGTGGTGGAACTTTTGCAGGAGCAG ttgtggctaagtatattgtcctacagaatgtctgctctcctgccccccagggTTTACAGGGACTGATTCTGACTATGAAAGACCCGAAACTCCAGAATGTGTGTTAAAAACCAATTTGTCATCAGTGAGTGATTGTGTGCAACAGGTGGTAGAACTTCTGCAAGAGCAGgtaacggcattgaatcaaaaggatgcaagttatctagatcttctgtactt Alignment from CESAR ggTTTACAGGCATCGATTCTGACTATGAGAAACCTGAAACTCCAGAGTGTGTGCTGAAGACCAACCTGTCTTCAGTAAGCGACTGTGTGCAACAGGTGGTGGAACTTTTGCAGGAGCAG ttgtggctaagtatattgtcctacagaatgtctgctctcctgccccccagggTTTACAGGGACTGATTCTGACTATGAAAGACCCGAAACTCCAGAATGTGTGTTAAAAACCAATTTGTCATCAGTGAGTGATTGTGTGCAACAGGTGGTAGAACTTCTGCAAGAGCAGgtaacggcattgaatcaaaaggatgcaagttatctagatcttctgtactt Alignment from Spaln_aa2Genome GGTTTACAGGCATCGATTCTGACTATGAGAAACCTGAAACTCCAGAGTGTGTGCTGAAGACCAACCTGTCTTCAGTAAGCGACTGTGTGCAACAGGTGGTGGAACTTTTGCAGGAGCAG ttgtggctaagtatattgtcctacagaatgtctgctctcctgccccccagGGTTTACAGGGACTGATTCTGACTATGAAAGACCCGAAACTCCAGAATGTGTGTTAAAAACCAATTTGTCATCAGTGAGTGATTGTGTGCAACAGGTGGTAGAACTTCTGCAAGAGCAGgtaacggcattgaatcaaaaggatgcaagttatctagatcttctgtactt Alignment from Spaln_nt2Genome GGTTTACAGGCATCGATTCTGACTATGAGAAACCTGAAACTCCAGAGTGTGTGCTGAAGACCAACCTGTCTTCAGTAAGCGACTGTGTGCAACAGGTGGTGGAACTTTTGCAGGAGCAG ttgtggctaagtatattgtcctacagaatgtctgctctcctgccccccagGGTTTACAGGGACTGATTCTGACTATGAAAGACCCGAAACTCCAGAATGTGTGTTAAAAACCAATTTGTCATCAGTGAGTGATTGTGTGCAACAGGTGGTAGAACTTCTGCAAGAGCAGgtaacggcattgaatcaaaaggatgcaagttatctagatcttctgtactt Alignment from Pairagon GGTTTACAGGCATCGATTCTGACTATGAGAAACCTGAAACTCCAGAGTGTGTGCTGAAGACCAACCTGTCTTCAGTAAGCGACTGTGTGCAACAGGTGGTGGAACTTTTGCAGGAGCAG ttgtggctaagtatattgtcctacagaatgtctgctctcctgccccccagGGTTTACAGGGACTGATTCTGACTATGAAAGACCCGAAACTCCAGAATGTGTGTTAAAAACCAATTTGTCATCAGTGAGTGATTGTGTGCAACAGGTGGTAGAACTTCTGCAAGAGCAGgtaacggcattgaatcaaaaggatgcaagttatctagatcttctgtactt Alignment from Exonerate_protein2genome GGTTTACAGGCATCGATTCTGACTATGAGAAACCTGAAACTCCAGAGTGTGTGCTGAAGACCAACCTGTCTTCAGTAAGCGACTGTGTGCAACAGGTGGTGGAACTTTTGCAGGAGCAG ttgtggctaagtatattgtcctacagaatgtctgctctcctgccccccagGGTTTACAGGGACTGATTCTGACTATGAAAGACCCGAAACTCCAGAATGTGTGTTAAAAACCAATTTGTCATCAGTGAGTGATTGTGTGCAACAGGTGGTAGAACTTCTGCAAGAGCAGgtaacggcattgaatcaaaaggatgcaagttatctagatcttctgtactt Alignment from Exonerate_coding2genome GGTTTACAGGCATCGATTCTGACTATGAGAAACCTGAAACTCCAGAGTGTGTGCTGAAGACCAACCTGTCTTCAGTAAGCGACTGTGTGCAACAGGTGGTGGAACTTTTGCAGGAGCAG ttgtggctaagtatattgtcctacagaatgtctgctctcctgccccccagGGTTTACAGGGACTGATTCTGACTATGAAAGACCCGAAACTCCAGAATGTGTGTTAAAAACCAATTTGTCATCAGTGAGTGATTGTGTGCAACAGGTGGTAGAACTTCTGCAAGAGCAGgtaacggcattgaatcaaaaggatgcaagttatctagatcttctgtactt Alignment from GeneWise GGTTTACAGGCATCGATTCTGACTATGAGAAACCTGAAACTCCAGAGTGTGTGCTGAAGACCAACCTGTCTTCAGTAAGCGACTGTGTGCAACAGGTGGTGGAACTTTTGCAGGAGCAG ttgtggctaagtatattgtcctacagaatgtctgctctcctgccccccagGGTTTACAGGGACTGATTCTGACTATGAAAGACCCGAAACTCCAGAATGTGTGTTAAAAACCAATTTGTCATCAGTGAGTGATTGTGTGCAACAGGTGGTAGAACTTCTGCAAGAGCAGgtaacggcattgaatcaaaaggatgcaagttatctagatcttctgtactt #### Papss2_ID6710_6 --> 0 - 0 Original Alignment AACATTGTACCCCACACCACCATCAAAGGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTCGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACCAAG taattccttggggactcaccaaattaccattttacctcttctctttacagAACATTGTCCCGCACACCACTATCAAAAGCATCCATGAACTCTTTGTGCCAGAAAACAAAGTTGATCAAATCCGAGCTGAGGCAGAGACTCTTCCATCGCTGCCAATTACAAAGgtgacagtgcgtagattgtaaggggaatctctatcttggaacccattatt Alignment from CESAR AACATTGTACCCCACACCACCATCAAAGGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTCGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACCAAG taattccttggggactcaccaaattaccattttacctcttctctttacagAACATTGTCCCGCACACCACTATCAAAAGCATCCATGAACTCTTTGTGCCAGAAAACAAAGTTGATCAAATCCGAGCTGAGGCAGAGACTCTTCCATCGCTGCCAATTACAAAGgtgacagtgcgtagattgtaaggggaatctctatcttggaacccattatt Alignment from Spaln_aa2Genome AACATTGTACCCCACACCACCATCAAAGGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTCGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACCAAG taattccttggggactcaccaaattaccattttacctcttctctttacagAACATTGTCCCGCACACCACTATCAAAAGCATCCATGAACTCTTTGTGCCAGAAAACAAAGTTGATCAAATCCGAGCTGAGGCAGAGACTCTTCCATCGCTGCCAATTACAAAGgtgacagtgcgtagattgtaaggggaatctctatcttggaacccattatt Alignment from Spaln_nt2Genome AACATTGTACCCCACACCACCATCAAAGGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTCGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACCAAG taattccttggggactcaccaaattaccattttacctcttctctttacagAACATTGTCCCGCACACCACTATCAAAAGCATCCATGAACTCTTTGTGCCAGAAAACAAAGTTGATCAAATCCGAGCTGAGGCAGAGACTCTTCCATCGCTGCCAATTACAAAGgtgacagtgcgtagattgtaaggggaatctctatcttggaacccattatt Alignment from Pairagon AACATTGTACCCCACACCACCATCAAAGGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTCGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACCAAG taattccttggggactcaccaaattaccattttacctcttctctttacagAACATTGTCCCGCACACCACTATCAAAAGCATCCATGAACTCTTTGTGCCAGAAAACAAAGTTGATCAAATCCGAGCTGAGGCAGAGACTCTTCCATCGCTGCCAATTACAAAGgtgacagtgcgtagattgtaaggggaatctctatcttggaacccattatt Alignment from Exonerate_protein2genome AACATTGTACCCCACACCACCATCAAAGGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTCGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACCAAG taattccttggggactcaccaaattaccattttacctcttctctttacagAACATTGTCCCGCACACCACTATCAAAAGCATCCATGAACTCTTTGTGCCAGAAAACAAAGTTGATCAAATCCGAGCTGAGGCAGAGACTCTTCCATCGCTGCCAATTACAAAGgtgacagtgcgtagattgtaaggggaatctctatcttggaacccattatt Alignment from Exonerate_coding2genome AACATTGTACCCCACACCACCATCAAAGGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTCGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACCAAG taattccttggggactcaccaaattaccattttacctcttctctttacagAACATTGTCCCGCACACCACTATCAAAAGCATCCATGAACTCTTTGTGCCAGAAAACAAAGTTGATCAAATCCGAGCTGAGGCAGAGACTCTTCCATCGCTGCCAATTACAAAGgtgacagtgcgtagattgtaaggggaatctctatcttggaacccattatt Alignment from GeneWise AACATTGTACCCCACACCACCATCAAAGGCATCCACGAACTCTTTGTGCCAGAAAACAAAGTCGATCAAATCCGAGCTGAGGCAGAGACTCTCCCATCACTACCAATTACCAAG taattccttggggactcaccaaattaccattttacctcttctctttacagAACATTGTCCCGCACACCACTATCAAAAGCATCCATGAACTCTTTGTGCCAGAAAACAAAGTTGATCAAATCCGAGCTGAGGCAGAGACTCTTCCATCGCTGCCAATTACAAAGgtgacagtgcgtagattgtaaggggaatctctatcttggaacccattatt #### Papss2_ID6711_7 --> 0 - 1 Original Alignment CTGGATCTGCAGTGGGTGCAGATTCTGAGTGAAGGCTGGGCCACTCCCCTCAAAGGCTTTATGCGGGAGAAGGAGTACTTGCAAACTCTACACTTCGACACTCTACTGGACg tcttcttttctcacatctccatgtcagtccatccccaccccaccatgcagCTAGATCTACAGTGGGTGCAAATTCAGAGTGAAGGCTGGACTACTCCTTTAAAAGGCTTTATGCGGGAGAAGGAGTATTTGCAAACTCTCCACTTTGATACACTACTGGATggtaagttgttatctcctcctgctagttctaatagaataacaggtttacca Alignment from CESAR CTGGATCTGCAGTGGGTGCAGATTCTGAGTGAAGGCTGGGCCACTCCCCTCAAAGGCTTTATGCGGGAGAAGGAGTACTTGCAAACTCTACACTTCGACACTCTACTGGACg tcttcttttctcacatctccatgtcagtccatccccaccccaccatgcagCTAGATCTACAGTGGGTGCAAATTCAGAGTGAAGGCTGGACTACTCCTTTAAAAGGCTTTATGCGGGAGAAGGAGTATTTGCAAACTCTCCACTTTGATACACTACTGGATggtaagttgttatctcctcctgctagttctaatagaataacaggtttacca Alignment from Spaln_aa2Genome CTGGATCTGCAGTGGGTGCAGATTCTGAGTGAAGGCTGGGCCACTCCCCTCAAAGGCTTTATGCGGGAGAAGGAGTACTTGCAAACTCTACACTTCGACACTCTACTGGACG tcttcttttctcacatctccatgtcagtccatccccaccccaccatgcagCTAGATCTACAGTGGGTGCAAATTCAGAGTGAAGGCTGGACTACTCCTTTAAAAGGCTTTATGCGGGAGAAGGAGTATTTGCAAACTCTCCACTTTGATACACTACTGGATGgtaagttgttatctcctcctgctagttctaatagaataacaggtttacca Alignment from Spaln_nt2Genome CTGGATCTGCAGTGGGTGCAGATTCTGAGTGAAGGCTGGGCCACTCCCCTCAAAGGCTTTATGCGGGAGAAGGAGTACTTGCAAACTCTACACTTCGACACTCTACTGGACG tcttcttttctcacatctccatgtcagtccatccccaccccaccatgcagCTAGATCTACAGTGGGTGCAAATTCAGAGTGAAGGCTGGACTACTCCTTTAAAAGGCTTTATGCGGGAGAAGGAGTATTTGCAAACTCTCCACTTTGATACACTACTGGATGgtaagttgttatctcctcctgctagttctaatagaataacaggtttacca Alignment from Pairagon CTGGATCTGCAGTGGGTGCAGATTCTGAGTGAAGGCTGGGCCACTCCCCTCAAAGGCTTTATGCGGGAGAAGGAGTACTTGCAAACTCTACACTTCGACACTCTACTGGACG tcttcttttctcacatctccatgtcagtccatccccaccccaccatgcagCTAGATCTACAGTGGGTGCAAATTCAGAGTGAAGGCTGGACTACTCCTTTAAAAGGCTTTATGCGGGAGAAGGAGTATTTGCAAACTCTCCACTTTGATACACTACTGGATGgtaagttgttatctcctcctgctagttctaatagaataacaggtttacca Alignment from Exonerate_protein2genome CTGGATCTGCAGTGGGTGCAGATTCTGAGTGAAGGCTGGGCCACTCCCCTCAAAGGCTTTATGCGGGAGAAGGAGTACTTGCAAACTCTACACTTCGACACTCTACTGGACG tcttcttttctcacatctccatgtcagtccatccccaccccaccatgcagCTAGATCTACAGTGGGTGCAAATTCAGAGTGAAGGCTGGACTACTCCTTTAAAAGGCTTTATGCGGGAGAAGGAGTATTTGCAAACTCTCCACTTTGATACACTACTGGATGgtaagttgttatctcctcctgctagttctaatagaataacaggtttacca Alignment from Exonerate_coding2genome CTGGATCTGCAGTGGGTGCAGATTCTGAGTGAAGGCTGGGCCACTCCCCTCAAAGGCTTTATGCGGGAGAAGGAGTACTTGCAAACTCTACACTTCGACACTCTACTGGACG tcttcttttctcacatctccatgtcagtccatccccaccccaccatgcagCTAGATCTACAGTGGGTGCAAATTCAGAGTGAAGGCTGGACTACTCCTTTAAAAGGCTTTATGCGGGAGAAGGAGTATTTGCAAACTCTCCACTTTGATACACTACTGGATGgtaagttgttatctcctcctgctagttctaatagaataacaggtttacca Alignment from GeneWise CTGGATCTGCAGTGGGTGCAGATTCTGAGTGAAGGCTGGGCCACTCCCCTCAAAGGCTTTATGCGGGAGAAGGAGTACTTGCAAACTCTACACTTCGACACTCTACTGGACG tcttcttttctcacatctccatgtcagtccatccccaccccaccatgcagCTAGATCTACAGTGGGTGCAAATTCAGAGTGAAGGCTGGACTACTCCTTTAAAAGGCTTTATGCGGGAGAAGGAGTATTTGCAAACTCTCCACTTTGATACACTACTGGATGgtaagttgttatctcctcctgctagttctaatagaataacaggtttacca #### Patl1_ID3321_6 --> 0 - 0 Original Alignment ATCCTGTGTCCGAAGCCTGTTCATGTTCGGCCCCCAATGCCGCCACGCTATCCTGCTCCCTATGGCGAGAGGATATCTCCAAACCAGCTCTGCAGTGTCCCG atggcattatttggaatctgtaggaggattttgtgttttcccggttccagATCTTGTGTCCGAAGCCTGTTCATGTTCGGCCCCCAATGCCGCCACGCTATCCTGCTCCCTATGGCGAGAGGATATCTCCAAACCAGCTCTGCAGTGTCCCAgtgtgtcctttgcaatagcaaaccttcaatgtttagtatgccctattgcc Alignment from CESAR ATCCTGTGTCCGAAGCCTGTTCATGTTCGGCCCCCAATGCCGCCACGCTATCCTGCTCCCTATGGCGAGAGGATATCTCCAAACCAGCTCTGCAGTGTCCCG atggcattatttggaatctgtaggaggattttgtgttttcccggttccagATCTTGTGTCCGAAGCCTGTTCATGTTCGGCCCCCAATGCCGCCACGCTATCCTGCTCCCTATGGCGAGAGGATATCTCCAAACCAGCTCTGCAGTGTCCCAgtgtgtcctttgcaatagcaaaccttcaatgtttagtatgccctattgcc Alignment from Spaln_aa2Genome ATCCTGTGTCCGAAGCCTGTTCATGTTCGGCCCCCAATGCCGCCACGCTATCCTGCTCCCTATGGCGAGAGGATATCTCCAAACCAGCTCTGCAGTGTCCCG atggcattatttggaatctgtaggaggattttgtgttttcccggttccagATCTTGTGTCCGAAGCCTGTTCATGTTCGGCCCCCAATGCCGCCACGCTATCCTGCTCCCTATGGCGAGAGGATATCTCCAAACCAGCTCTGCAGTGTCCCAgtgtgtcctttgcaatagcaaaccttcaatgtttagtatgccctattgcc Alignment from Spaln_nt2Genome ATCCTGTGTCCGAAGCCTGTTCATGTTCGGCCCCCAATGCCGCCACGCTATCCTGCTCCCTATGGCGAGAGGATATCTCCAAACCAGCTCTGCAGTGTCCCG atggcattatttggaatctgtaggaggattttgtgttttcccggttccagATCTTGTGTCCGAAGCCTGTTCATGTTCGGCCCCCAATGCCGCCACGCTATCCTGCTCCCTATGGCGAGAGGATATCTCCAAACCAGCTCTGCAGTGTCCCAgtgtgtcctttgcaatagcaaaccttcaatgtttagtatgccctattgcc Alignment from Pairagon ATCCTGTGTCCGAAGCCTGTTCATGTTCGGCCCCCAATGCCGCCACGCTATCCTGCTCCCTATGGCGAGAGGATATCTCCAAACCAGCTCTGCAGTGTCCCG atggcattatttggaatctgtaggaggattttgtgttttcccggttccagATCTTGTGTCCGAAGCCTGTTCATGTTCGGCCCCCAATGCCGCCACGCTATCCTGCTCCCTATGGCGAGAGGATATCTCCAAACCAGCTCTGCAGTGTCCCAgtgtgtcctttgcaatagcaaaccttcaatgtttagtatgccctattgcc Alignment from Exonerate_protein2genome CAACAGATCCTGTGTCCGAAGCCTGTTCATGTTCGGCCCCCAATGCCGCCACGCTATCCTGCTCCCTATGGCGAGAGGATATCTCCAAACCAGCTCTGCAGTGTCCCG atggcattatttggaatctgtaggaggattttgtgttttcccggTTCCAGATCTTGTGTCCGAAGCCTGTTCATGTTCGGCCCCCAATGCCGCCACGCTATCCTGCTCCCTATGGCGAGAGGATATCTCCAAACCAGCTCTGCAGTGTCCCAgtgtgtcctttgcaatagcaaaccttcaatgtttagtatgccctattgcc Alignment from Exonerate_coding2genome CAACAGATCCTGTGTCCGAAGCCTGTTCATGTTCGGCCCCCAATGCCGCCACGCTATCCTGCTCCCTATGGCGAGAGGATATCTCCAAACCAGCTCTGCAGTGTCCCG atggcattatttggaatctgtaggaggattttgtgttttcccggTTCCAGATCTTGTGTCCGAAGCCTGTTCATGTTCGGCCCCCAATGCCGCCACGCTATCCTGCTCCCTATGGCGAGAGGATATCTCCAAACCAGCTCTGCAGTGTCCCAgtgtgtcctttgcaatagcaaaccttcaatgtttagtatgccctattgcc Alignment from GeneWise ATCCTGTGTCCGAAGCCTGTTCATGTTCGGCCCCCAATGCCGCCACGCTATCCTGCTCCCTATGGCGAGAGGATATCTCCAAACCAGCTCTGCAGTGTCCCG atggcattatttggaatctgtaggaggattttgtgttttcccggttccagATCTTGTGTCCGAAGCCTGTTCATGTTCGGCCCCCAATGCCGCCACGCTATCCTGCTCCCTATGGCGAGAGGATATCTCCAAACCAGCTCTGCAGTGTCCCAgtgtgtcctttgcaatagcaaaccttcaatgtttagtatgccctattgcc #### Patl1_ID3325_10 --> 1 - 0 Original Alignment tCAGCATCGGAATCTCAATGGTACTGGAGATAGAGGAGGGCACCAGTCCAGTCATCAAGATCATCTCCGGAAGGATCCATATGCTAATCTAATGTTGCAGCGGGAGAAGGATTGGGTCTCTAAAATACAGATGATGCAGCTGCAGAGCACTGATCCCTACCTGGATGATTTCTATTACCAG atttgcaggatgttgtcaaacctggtgattatttttttatttattatcagtCAGCATCGGAACCTCAATGGTACTGGAGATAGAGGAGGGCACCAGTCCAGTCATCAAGATCATCTCCGGAAGGATCCATATGCTAATCTAATGTTGCAGTGGGAGAAAGACTGGGTCTCTAAAATACAGATGATGCAGCTGCAGAGCACTGATCCCTACCTGGATGATTTCTATTACCAGgtgagtatacagaagtgtcttctggtccagataagatctgcctacttaat Alignment from CESAR tCAGCATCGGAATCTCAATGGTACTGGAGATAGAGGAGGGCACCAGTCCAGTCATCAAGATCATCTCCGGAAGGATCCATATGCTAATCTAATGTTGCAGCGGGAGAAGGATTGGGTCTCTAAAATACAGATGATGCAGCTGCAGAGCACTGATCCCTACCTGGATGATTTCTATTACCAG atttgcaggatgttgtcaaacctggtgattatttttttatttattatcagtCAGCATCGGAACCTCAATGGTACTGGAGATAGAGGAGGGCACCAGTCCAGTCATCAAGATCATCTCCGGAAGGATCCATATGCTAATCTAATGTTGCAGTGGGAGAAAGACTGGGTCTCTAAAATACAGATGATGCAGCTGCAGAGCACTGATCCCTACCTGGATGATTTCTATTACCAGgtgagtatacagaagtgtcttctggtccagataagatctgcctacttaat Alignment from Spaln_aa2Genome TCAGCATCGGAATCTCAATGGTACTGGAGATAGAGGAGGGCACCAGTCCAGTCATCAAGATCATCTCCGGAAGGATCCATATGCTAATCTAATGTTGCAGCGGGAGAAGGATTGGGTCTCTAAAATACAGATGATGCAGCTGCAGAGCACTGATCCCTACCTGGATGATTTCTATTACCAG atttgcaggatgttgtcaaacctggtgattatttttttatttattatcagTCAGCATCGGAACCTCAATGGTACTGGAGATAGAGGAGGGCACCAGTCCAGTCATCAAGATCATCTCCGGAAGGATCCATATGCTAATCTAATGTTGCAGTGGGAGAAAGACTGGGTCTCTAAAATACAGATGATGCAGCTGCAGAGCACTGATCCCTACCTGGATGATTTCTATTACCAGgtgagtatacagaagtgtcttctggtccagataagatctgcctacttaat Alignment from Spaln_nt2Genome TCAGCATCGGAATCTCAATGGTACTGGAGATAGAGGAGGGCACCAGTCCAGTCATCAAGATCATCTCCGGAAGGATCCATATGCTAATCTAATGTTGCAGCGGGAGAAGGATTGGGTCTCTAAAATACAGATGATGCAGCTGCAGAGCACTGATCCCTACCTGGATGATTTCTATTACCAG atttgcaggatgttgtcaaacctggtgattatttttttatttattatcagTCAGCATCGGAACCTCAATGGTACTGGAGATAGAGGAGGGCACCAGTCCAGTCATCAAGATCATCTCCGGAAGGATCCATATGCTAATCTAATGTTGCAGTGGGAGAAAGACTGGGTCTCTAAAATACAGATGATGCAGCTGCAGAGCACTGATCCCTACCTGGATGATTTCTATTACCAGgtgagtatacagaagtgtcttctggtccagataagatctgcctacttaat Alignment from Pairagon TCAGCATCGGAATCTCAATGGTACTGGAGATAGAGGAGGGCACCAGTCCAGTCATCAAGATCATCTCCGGAAGGATCCATATGCTAATCTAATGTTGCAGCGGGAGAAGGATTGGGTCTCTAAAATACAGATGATGCAGCTGCAGAGCACTGATCCCTACCTGGATGATTTCTATTACCAG atttgcaggatgttgtcaaacctggtgattatttttttatttattatcagTCAGCATCGGAACCTCAATGGTACTGGAGATAGAGGAGGGCACCAGTCCAGTCATCAAGATCATCTCCGGAAGGATCCATATGCTAATCTAATGTTGCAGTGGGAGAAAGACTGGGTCTCTAAAATACAGATGATGCAGCTGCAGAGCACTGATCCCTACCTGGATGATTTCTATTACCAGgtgagtatacagaagtgtcttctggtccagataagatctgcctacttaat Alignment from Exonerate_protein2genome TCAGCATCGGAATCTCAATGGTACTGGAGATAGAGGAGGGCACCAGTCCAGTCATCAAGATCATCTCCGGAAGGATCCATATGCTAATCTAATGTTGCAGCGGGAGAAGGATTGGGTCTCTAAAATACAGATGATGCAGCTGCAGAGCACTGATCCCTACCTGGATGATTTCTATTACCAG atttgcaggatgttgtcaaacctggtgattatttttttatttattatcagTCAGCATCGGAACCTCAATGGTACTGGAGATAGAGGAGGGCACCAGTCCAGTCATCAAGATCATCTCCGGAAGGATCCATATGCTAATCTAATGTTGCAGTGGGAGAAAGACTGGGTCTCTAAAATACAGATGATGCAGCTGCAGAGCACTGATCCCTACCTGGATGATTTCTATTACCAGgtgagtatacagaagtgtcttctggtccagataagatctgcctacttaat Alignment from Exonerate_coding2genome TCAGCATCGGAATCTCAATGGTACTGGAGATAGAGGAGGGCACCAGTCCAGTCATCAAGATCATCTCCGGAAGGATCCATATGCTAATCTAATGTTGCAGCGGGAGAAGGATTGGGTCTCTAAAATACAGATGATGCAGCTGCAGAGCACTGATCCCTACCTGGATGATTTCTATTACCAG atttgcaggatgttgtcaaacctggtgattatttttttatttattatcagTCAGCATCGGAACCTCAATGGTACTGGAGATAGAGGAGGGCACCAGTCCAGTCATCAAGATCATCTCCGGAAGGATCCATATGCTAATCTAATGTTGCAGTGGGAGAAAGACTGGGTCTCTAAAATACAGATGATGCAGCTGCAGAGCACTGATCCCTACCTGGATGATTTCTATTACCAGgtgagtatacagaagtgtcttctggtccagataagatctgcctacttaat Alignment from GeneWise TCAGCATCGGAATCTCAATGGTACTGGAGATAGAGGAGGGCACCAGTCCAGTCATCAAGATCATCTCCGGAAGGATCCATATGCTAATCTAATGTTGCAGCGGGAGAAGGATTGGGTCTCTAAAATACAGATGATGCAGCTGCAGAGCACTGATCCCTACCTGGATGATTTCTATTACCAG atttgcaggatgttgtcaaacctggtgattatttttttatttattatcagTCAGCATCGGAACCTCAATGGTACTGGAGATAGAGGAGGGCACCAGTCCAGTCATCAAGATCATCTCCGGAAGGATCCATATGCTAATCTAATGTTGCAGTGGGAGAAAGACTGGGTCTCTAAAATACAGATGATGCAGCTGCAGAGCACTGATCCCTACCTGGATGATTTCTATTACCAGgtgagtatacagaagtgtcttctggtccagataagatctgcctacttaat #### Patl1_ID3326_11 --> 0 - 1 Original Alignment AATTACTTTGAAAAACTGGAGAAATTGTCAGCTGCTGAGGAAATACAAGGTGATGGCCCTAAGAAGGAGCGTACCAAGCTCATCACCCCTCAGGTGGCCAAACTGGAGCATGCTTATCAGCCTg agaattaacctgtgccccctttgttgtaaatatcttcatttctccattagAATTACTTCCAAAAACTTGAGAAATTGTCAGCCGCTGAGGAAATTCAGGGCGATGGCCCCAAAAAAGAGTGTACCAAACTCATCACCCCACAGGTAGCAAAACTGGCTCATGCTTTCCAGCCAggtgagggttctagggagggttactatccagagagtgttgagagatggtct Alignment from CESAR AATTACTTTGAAAAACTGGAGAAATTGTCAGCTGCTGAGGAAATACAAGGTGATGGCCCTAAGAAGGAGCGTACCAAGCTCATCACCCCTCAGGTGGCCAAACTGGAGCATGCTTATCAGCCTg agaattaacctgtgccccctttgttgtaaatatcttcatttctccattagAATTACTTCCAAAAACTTGAGAAATTGTCAGCCGCTGAGGAAATTCAGGGCGATGGCCCCAAAAAAGAGTGTACCAAACTCATCACCCCACAGGTAGCAAAACTGGCTCATGCTTTCCAGCCAggtgagggttctagggagggttactatccagagagtgttgagagatggtct Alignment from Spaln_aa2Genome AATTACTTTGAAAAACTGGAGAAATTGTCAGCTGCTGAGGAAATACAAGGTGATGGCCCTAAGAAGGAGCGTACCAAGCTCATCACCCCTCAGGTGGCCAAACTGGAGCATGCTTATCAGCCTG agaattaacctgtgccccctttgttgtaaatatcttcatttctccattagAATTACTTCCAAAAACTTGAGAAATTGTCAGCCGCTGAGGAAATTCAGGGCGATGGCCCCAAAAAAGAGTGTACCAAACTCATCACCCCACAGGTAGCAAAACTGGCTCATGCTTTCCAGCCAGgtgagggttctagggagggttactatccagagagtgttgagagatggtct Alignment from Spaln_nt2Genome AATTACTTTGAAAAACTGGAGAAATTGTCAGCTGCTGAGGAAATACAAGGTGATGGCCCTAAGAAGGAGCGTACCAAGCTCATCACCCCTCAGGTGGCCAAACTGGAGCATGCTTATCAGCCTG agaattaacctgtgccccctttgttgtaaatatcttcatttctccattagAATTACTTCCAAAAACTTGAGAAATTGTCAGCCGCTGAGGAAATTCAGGGCGATGGCCCCAAAAAAGAGTGTACCAAACTCATCACCCCACAGGTAGCAAAACTGGCTCATGCTTTCCAGCCAGgtgagggttctagggagggttactatccagagagtgttgagagatggtct Alignment from Pairagon AATTACTTTGAAAAACTGGAGAAATTGTCAGCTGCTGAGGAAATACAAGGTGATGGCCCTAAGAAGGAGCGTACCAAGCTCATCACCCCTCAGGTGGCCAAACTGGAGCATGCTTATCAGCCTG agaattaacctgtgccccctttgttgtaaatatcttcatttctccattagAATTACTTCCAAAAACTTGAGAAATTGTCAGCCGCTGAGGAAATTCAGGGCGATGGCCCCAAAAAAGAGTGTACCAAACTCATCACCCCACAGGTAGCAAAACTGGCTCATGCTTTCCAGCCAGgtgagggttctagggagggttactatccagagagtgttgagagatggtct Alignment from Exonerate_protein2genome AATTACTTTGAAAAACTGGAGAAATTGTCAGCTGCTGAGGAAATACAAGGTGATGGCCCTAAGAAGGAGCGTACCAAGCTCATCACCCCTCAGGTGGCCAAACTGGAGCATGCTTATCAGCCTG agaattaacctgtgccccctttgttgtaaatatcttcatttctccattagAATTACTTCCAAAAACTTGAGAAATTGTCAGCCGCTGAGGAAATTCAGGGCGATGGCCCCAAAAAAGAGTGTACCAAACTCATCACCCCACAGGTAGCAAAACTGGCTCATGCTTTCCAGCCAGgtgagggttctagggagggttactatccagagagtgttgagagatggtct Alignment from Exonerate_coding2genome AATTACTTTGAAAAACTGGAGAAATTGTCAGCTGCTGAGGAAATACAAGGTGATGGCCCTAAGAAGGAGCGTACCAAGCTCATCACCCCTCAGGTGGCCAAACTGGAGCATGCTTATCAGCCTG agaattaacctgtgccccctttgttgtaaatatcttcatttctccattagAATTACTTCCAAAAACTTGAGAAATTGTCAGCCGCTGAGGAAATTCAGGGCGATGGCCCCAAAAAAGAGTGTACCAAACTCATCACCCCACAGGTAGCAAAACTGGCTCATGCTTTCCAGCCAGgtgagggttctagggagggttactatccagagagtgttgagagatggtct Alignment from GeneWise AATTACTTTGAAAAACTGGAGAAATTGTCAGCTGCTGAGGAAATACAAGGTGATGGCCCTAAGAAGGAGCGTACCAAGCTCATCACCCCTCAGGTGGCCAAACTGGAGCATGCTTATCAGCCTG agaattaacctgtgccccctttgttgtaaatatcttcatttctccattagAATTACTTCCAAAAACTTGAGAAATTGTCAGCCGCTGAGGAAATTCAGGGCGATGGCCCCAAAAAAGAGTGTACCAAACTCATCACCCCACAGGTAGCAAAACTGGCTCATGCTTTCCAGCCAGgtgagggttctagggagggttactatccagagagtgttgagagatggtct #### Pcgf5_ID7127_3 --> 1 - 1 Original Alignment gCTGGATAACACGTTGGAGGAAATTATCTTTAAATTAGTGCCTGGACTACGAGAAc agggttcttatgtagtagagactagattacccccacccatctgtgtgcaggCTGGATAACACATTGGAGGAAATCATCTTTAAATTAGTGCCTGGCCTACGAGAGcgtgagtccctgaagttctacaagctaggggtacatattccatatcattac Alignment from CESAR gCTGGATAACACGTTGGAGGAAATTATCTTTAAATTAGTGCCTGGACTACGAGAAc agggttcttatgtagtagagactagattacccccacccatctgtgtgcaggCTGGATAACACATTGGAGGAAATCATCTTTAAATTAGTGCCTGGCCTACGAGAGcgtgagtccctgaagttctacaagctaggggtacatattccatatcattac Alignment from Spaln_aa2Genome GCTGGATAACACGTTGGAGGAAATTATCTTTAAATTAGTGCCTGGACTACGAGAAC agggttcttatgtagtagagactagattacccccacccatctgtgtgcagGCTGGATAACACATTGGAGGAAATCATCTTTAAATTAGTGCCTGGCCTACGAGAGCgtgagtccctgaagttctacaagctaggggtacatattccatatcattac Alignment from Spaln_nt2Genome GCTGGATAACACGTTGGAGGAAATTATCTTTAAATTAGTGCCTGGACTACGAGAAC agggttcttatgtagtagagactagattacccccacccatctgtgtgcagGCTGGATAACACATTGGAGGAAATCATCTTTAAATTAGTGCCTGGCCTACGAGAGCgtgagtccctgaagttctacaagctaggggtacatattccatatcattac Alignment from Pairagon GCTGGATAACACGTTGGAGGAAATTATCTTTAAATTAGTGCCTGGACTACGAGAAC agggttcttatgtagtagagactagattacccccacccatctgtgtgcagGCTGGATAACACATTGGAGGAAATCATCTTTAAATTAGTGCCTGGCCTACGAGAGCgtgagtccctgaagttctacaagctaggggtacatattccatatcattac Alignment from Exonerate_protein2genome GCTGGATAACACGTTGGAGGAAATTATCTTTAAATTAGTGCCTGGACTACGAGAAC agggttcttatgtagtagagactagattacccccacccatctgtgtgcagGCTGGATAACACATTGGAGGAAATCATCTTTAAATTAGTGCCTGGCCTACGAGAGCgtgagtccctgaagttctacaagctaggggtacatattccatatcattac Alignment from Exonerate_coding2genome GCTGGATAACACGTTGGAGGAAATTATCTTTAAATTAGTGCCTGGACTACGAGAAC agggttcttatgtagtagagactagattacccccacccatctgtgtgcagGCTGGATAACACATTGGAGGAAATCATCTTTAAATTAGTGCCTGGCCTACGAGAGCgtgagtccctgaagttctacaagctaggggtacatattccatatcattac Alignment from GeneWise GCTGGATAACACGTTGGAGGAAATTATCTTTAAATTAGTGCCTGGACTACGAGAAC agggttcttatgtagtagagactagattacccccacccatctgtgtgcagGCTGGATAACACATTGGAGGAAATCATCTTTAAATTAGTGCCTGGCCTACGAGAGCgtgagtccctgaagttctacaagctaggggtacatattccatatcattac #### Pcnxl3_ID1160_33 --> 1 - 1 Original Alignment aCTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAg taggccacaaaatgcattaccatacacctcgtgactcttctttgttgcagaCTCCATAAGGGCTGTGGTGCTGGCTGCAATAGTGGAGGCAATCTCGATGATGCAGATTGTGGTGGGGGTGGTGGCCTAGCTTCCCTCAGCAACCATCCTCCCTTGGTACATCCTACACCTGATAATGTGGCAggtaggtgcaaggttttaagaaaattataaggtgagacattgtgctggcag Alignment from CESAR aCTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAg taggccacaaaatgcattaccatacacctcgtgactcttctttgttgcagaCTCCATAAGGGCTGTGGTGCTGGCTGCAATAGTGGAGGCAATCTCGATGATGCAGATTGTGGTGGGGGTGGTGGCCTAGCTTCCCTCAGCAACCATCCTCCCTTGGTACATCCTACACCTGATAATGTGGCAggtaggtgcaaggttttaagaaaattataaggtgagacattgtgctggcag Alignment from Spaln_aa2Genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG taggccacaaaatgcattaccatacacctcgtgactcttctttgttgcagACTCCATAAGGGCTGTGGTGCTGGCTGCAATAGTGGAGGCAATCTCGATGATGCAGATTGTGGTGGGGGTGGTGGCCTAGCTTCCCTCAGCAACCATCCTCCCTTGGTACATCCTACACCTGATAATGTGGCAGgtaggtgcaaggttttaagaaaattataaggtgagacattgtgctggcag Alignment from Spaln_nt2Genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG taggccacaaaatgcattaccatacacctcgtgactcttctttgttgcagACTCCATAAGGGCTGTGGTGCTGGCTGCAATAGTGGAGGCAATCTCGATGATGCAGATTGTGGTGGGGGTGGTGGCCTAGCTTCCCTCAGCAACCATCCTCCCTTGGTACATCCTACACCTGATAATGTGGCAGgtaggtgcaaggttttaagaaaattataaggtgagacattgtgctggcag Alignment from Pairagon ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG taggccacaaaatgcattaccatacacctcgtgactcttctttgttgcagACTCCATAAGGGCTGTGGTGCTGGCTGCAATAGTGGAGGCAATCTCGATGATGCAGATTGTGGTGGGGGTGGTGGCCTAGCTTCCCTCAGCAACCATCCTCCCTTGGTACATCCTACACCTGATAATGTGGCAGgtaggtgcaaggttttaagaaaattataaggtgagacattgtgctggcag Alignment from Exonerate_protein2genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG taggccacaaaatgcattaccatacacctcgtgactcttctttgttgcagACTCCATAAGGGCTGTGGTGCTGGCTGCAATAGTGGAGGCAATCTCGATGATGCAGATTGTGGTGGGGGTGGTGGCCTAGCTTCCCTCAGCAACCATCCTCCCTTGGTACATCCTACACCTGATAATGTGGCAGgtaggtgcaaggttttaagaaaattataaggtgagacattgtgctggcag Alignment from Exonerate_coding2genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG taggccacaaaatgcattaccatacacctcgtgactcttctttgttgcagACTCCATAAGGGCTGTGGTGCTGGCTGCAATAGTGGAGGCAATCTCGATGATGCAGATTGTGGTGGGGGTGGTGGCCTAGCTTCCCTCAGCAACCATCCTCCCTTGGTACATCCTACACCTGATAATGTGGCAGgtaggtgcaaggttttaagaaaattataaggtgagacattgtgctggcag Alignment from GeneWise ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAGGCAG taggccacaaaatgcattaccatacacctcgtgactcttctttgttgcagACTCCATAAGGGCTGTGGTGCTGGCTGCAATAGTGGAGGCAATCTCGATGATGCAGATTGTGGTGGGGGTGGTGGCCTAGCTTCCCTCAGCAACCATCCTCCCTTGGTACATCCTACACCTGATAATGTGGCAGGTAGgtgcaaggttttaagaaaattataaggtgagacattgtgctggcag #### Pcnxl3_ID1163_30 --> 1 - 0 Original Alignment cCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTT------CACCAG ccttaatgatccttcgagatggagaagctctgcctttcatttctcttaagcCTTGAGCCCTTCCTCTATGGTCTACGAGCTCTGTTCAAGGGAGATTTCAGGATCACCTCCCCCCGTGATGAGTGGGTTTTTACTGACATAGATTTATTGCACCAAGTGGTGGCACCAGGGGTCCGTATGGCCCTAAAGCTTCATCATCATCAGgtatgttataattaaggcagagtaggggcgggtgccttccctttacctta Alignment from CESAR cCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTT------CACCAG ccttaatgatccttcgagatggagaagctctgcctttcatttctcttaagcCTTGAGCCCTTCCTCTATGGTCTACGAGCTCTGTTCAAGGGAGATTTCAGGATCACCTCCCCCCGTGATGAGTGGGTTTTTACTGACATAGATTTATTGCACCAAGTGGTGGCACCAGGGGTCCGTATGGCCCTAAAGCTTCATCATCATCAGgtatgttataattaaggcagagtaggggcgggtgccttccctttacctta Alignment from Spaln_aa2Genome CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTT------CACCAG ccttaatgatccttcgagatggagaagctctgcctttcatttctcttaagCCTTGAGCCCTTCCTCTATGGTCTACGAGCTCTGTTCAAGGGAGATTTCAGGATCACCTCCCCCCGTGATGAGTGGGTTTTTACTGACATAGATTTATTGCACCAAGTGGTGGCACCAGGGGTCCGTATGGCCCTAAAGCTTCATCATCATCAGgtatgttataattaaggcagagtaggggcgggtgccttccctttacctta Alignment from Spaln_nt2Genome CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCACCA------G ccttaatgatccttcgagatggagaagctctgcctttcatttctcttaagCCTTGAGCCCTTCCTCTATGGTCTACGAGCTCTGTTCAAGGGAGATTTCAGGATCACCTCCCCCCGTGATGAGTGGGTTTTTACTGACATAGATTTATTGCACCAAGTGGTGGCACCAGGGGTCCGTATGGCCCTAAAGCTTCATCATCATCAGgtatgttataattaaggcagagtaggggcgggtgccttccctttacctta Alignment from Pairagon CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCA------------------------------------------------------------ ccttaatgatccttcgagatggagaagctctgcctttcatttctcttaagCCTTGAGCCCTTCCTCTATGGTCTACGAGCTCTGTTCAAGGGAGATTTCAGGATCACCTCCCCCCGTGATGAGTGGGTTTTTACTGACATAGATTTATTGCACCAAGTGGTGGCACCAGGGGTCCGTATGGCCCTAAAGCTTCATCATCATCAGGTATGTTATAATTAAGGCAGAGTAGGGGCGGGTGCCTTCCCTTTACCTTA Alignment from Exonerate_protein2genome CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTT------CACCAG ccttaatgatccttcgagatggagaagctctgcctttcatttctcttaagCCTTGAGCCCTTCCTCTATGGTCTACGAGCTCTGTTCAAGGGAGATTTCAGGATCACCTCCCCCCGTGATGAGTGGGTTTTTACTGACATAGATTTATTGCACCAAGTGGTGGCACCAGGGGTCCGTATGGCCCTAAAGCTTCATCATCATCAGgtatgttataattaaggcagagtaggggcgggtgccttccctttacctta Alignment from Exonerate_coding2genome CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTT------CACCAG ccttaatgatccttcgagatggagaagctctgcctttcatttctcttaagCCTTGAGCCCTTCCTCTATGGTCTACGAGCTCTGTTCAAGGGAGATTTCAGGATCACCTCCCCCCGTGATGAGTGGGTTTTTACTGACATAGATTTATTGCACCAAGTGGTGGCACCAGGGGTCCGTATGGCCCTAAAGCTTCATCATCATCAGgtatgttataattaaggcagagtaggggcgggtgccttccctttacctta Alignment from GeneWise CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCAC------CAG ccttaatgatccttcgagatggagaagctctgcctttcatttctcttaagCCTTGAGCCCTTCCTCTATGGTCTACGAGCTCTGTTCAAGGGAGATTTCAGGATCACCTCCCCCCGTGATGAGTGGGTTTTTACTGACATAGATTTATTGCACCAAGTGGTGGCACCAGGGGTCCGTATGGCCCTAAAGCTTCATCATCATCAGgtatgttataattaaggcagagtaggggcgggtgccttccctttacctta #### Pcnxl3_ID1167_26 --> 2 - 1 Original Alignment gcGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGg aggcaatgcatttacttcgtttacttgaaattaatctcgtctgttcacaggaGCTGATGACAATAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCATTGCAACACATGCTTTGTGGCGATCTGGTCCTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTACTGGCTCCAGACTACCTAAATGGACTTGTCCAGCTCATTGAGGTTGGCAATGGTCTCATCACCTACCAGCCCCATGGCCTCAAGTTCCGGggtagggcagtttgggatcgaacacaagttaagggcagagcatagatatat Alignment from CESAR gcGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGg aggcaatgcatttacttcgtttacttgaaattaatctcgtctgttcacaggaGCTGATGACAATAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCATTGCAACACATGCTTTGTGGCGATCTGGTCCTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTACTGGCTCCAGACTACCTAAATGGACTTGTCCAGCTCATTGAGGTTGGCAATGGTCTCATCACCTACCAGCCCCATGGCCTCAAGTTCCGGggtagggcagtttgggatcgaacacaagttaagggcagagcatagatatat Alignment from Spaln_aa2Genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG aggcaatgcatttacttcgtttacttgaaattaatctcgtctgttcacagGAGCTGATGACAATAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCATTGCAACACATGCTTTGTGGCGATCTGGTCCTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTACTGGCTCCAGACTACCTAAATGGACTTGTCCAGCTCATTGAGGTTGGCAATGGTCTCATCACCTACCAGCCCCATGGCCTCAAGTTCCGGGgtagggcagtttgggatcgaacacaagttaagggcagagcatagatatat Alignment from Spaln_nt2Genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG aggcaatgcatttacttcgtttacttgaaattaatctcgtctgttcacagGAGCTGATGACAATAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCATTGCAACACATGCTTTGTGGCGATCTGGTCCTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTACTGGCTCCAGACTACCTAAATGGACTTGTCCAGCTCATTGAGGTTGGCAATGGTCTCATCACCTACCAGCCCCATGGCCTCAAGTTCCGGGgtagggcagtttgggatcgaacacaagttaagggcagagcatagatatat Alignment from Pairagon GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG aggcaatgcatttacttcgtttacttgaaattaatctcgtctgttcacagGAGCTGATGACAATAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCATTGCAACACATGCTTTGTGGCGATCTGGTCCTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTACTGGCTCCAGACTACCTAAATGGACTTGTCCAGCTCATTGAGGTTGGCAATGGTCTCATCACCTACCAGCCCCATGGCCTCAAGTTCCGGGgtagggcagtttgggatcgaacacaagttaagggcagagcatagatatat Alignment from Exonerate_protein2genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG aggcaatgcatttacttcgtttacttgaaattaatctcgtctgttcacagGAGCTGATGACAATAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCATTGCAACACATGCTTTGTGGCGATCTGGTCCTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTACTGGCTCCAGACTACCTAAATGGACTTGTCCAGCTCATTGAGGTTGGCAATGGTCTCATCACCTACCAGCCCCATGGCCTCAAGTTCCGGGgtagggcagtttgggatcgaacacaagttaagggcagagcatagatatat Alignment from Exonerate_coding2genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG aggcaatgcatttacttcgtttacttgaaattaatctcgtctgttcacagGAGCTGATGACAATAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCATTGCAACACATGCTTTGTGGCGATCTGGTCCTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTACTGGCTCCAGACTACCTAAATGGACTTGTCCAGCTCATTGAGGTTGGCAATGGTCTCATCACCTACCAGCCCCATGGCCTCAAGTTCCGGGgtagggcagtttgggatcgaacacaagttaagggcagagcatagatatat Alignment from GeneWise GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG aggcaatgcatttacttcgtttacttgaaattaatctcgtctgttcacagGAGCTGATGACAATAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCATTGCAACACATGCTTTGTGGCGATCTGGTCCTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTACTGGCTCCAGACTACCTAAATGGACTTGTCCAGCTCATTGAGGTTGGCAATGGTCTCATCACCTACCAGCCCCATGGCCTCAAGTTCCGGGgtagggcagtttgggatcgaacacaagttaagggcagagcatagatatat #### Pcnxl3_ID1169_24 --> 2 - 2 Original Alignment acTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACaa ggctacagaggaggggagaccgaggcagtctttctttatctccatgacagacTCAGCTATGTTGTTCCTTCAAGCTTTGCTCTCAGGTCTGTTCTCTACCCCACTCAATCCGTTATTGGGCAGTGCAGTATTCATTATGTCCTACACAAGTCCCCTCAAATACTGGGAGAGAGACTACaagtgagtcattaagggagagcactgtagtcccagagagaccttgagggatt Alignment from CESAR acTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACaa ggctacagaggaggggagaccgaggcagtctttctttatctccatgacagacTCAGCTATGTTGTTCCTTCAAGCTTTGCTCTCAGGTCTGTTCTCTACCCCACTCAATCCGTTATTGGGCAGTGCAGTATTCATTATGTCCTACACAAGTCCCCTCAAATACTGGGAGAGAGACTACaagtgagtcattaagggagagcactgtagtcccagagagaccttgagggatt Alignment from Spaln_aa2Genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggaggggagaccgaggcagtctttctttatctccatgacagACTCAGCTATGTTGTTCCTTCAAGCTTTGCTCTCAGGTCTGTTCTCTACCCCACTCAATCCGTTATTGGGCAGTGCAGTATTCATTATGTCCTACACAAGTCCCCTCAAATACTGGGAGAGAGACTACAAgtgagtcattaagggagagcactgtagtcccagagagaccttgagggatt Alignment from Spaln_nt2Genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggaggggagaccgaggcagtctttctttatctccatgacagACTCAGCTATGTTGTTCCTTCAAGCTTTGCTCTCAGGTCTGTTCTCTACCCCACTCAATCCGTTATTGGGCAGTGCAGTATTCATTATGTCCTACACAAGTCCCCTCAAATACTGGGAGAGAGACTACAAgtgagtcattaagggagagcactgtagtcccagagagaccttgagggatt Alignment from Pairagon ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggaggggagaccgaggcagtctttctttatctccatgacagACTCAGCTATGTTGTTCCTTCAAGCTTTGCTCTCAGGTCTGTTCTCTACCCCACTCAATCCGTTATTGGGCAGTGCAGTATTCATTATGTCCTACACAAGTCCCCTCAAATACTGGGAGAGAGACTACAAgtgagtcattaagggagagcactgtagtcccagagagaccttgagggatt Alignment from Exonerate_protein2genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggaggggagaccgaggcagtctttctttatctccatgacagACTCAGCTATGTTGTTCCTTCAAGCTTTGCTCTCAGGTCTGTTCTCTACCCCACTCAATCCGTTATTGGGCAGTGCAGTATTCATTATGTCCTACACAAGTCCCCTCAAATACTGGGAGAGAGACTACAAgtgagtcattaagggagagcactgtagtcccagagagaccttgagggatt Alignment from Exonerate_coding2genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggaggggagaccgaggcagtctttctttatctccatgacagACTCAGCTATGTTGTTCCTTCAAGCTTTGCTCTCAGGTCTGTTCTCTACCCCACTCAATCCGTTATTGGGCAGTGCAGTATTCATTATGTCCTACACAAGTCCCCTCAAATACTGGGAGAGAGACTACAAgtgagtcattaagggagagcactgtagtcccagagagaccttgagggatt Alignment from GeneWise ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggaggggagaccgaggcagtctttctttatctccatgacagACTCAGCTATGTTGTTCCTTCAAGCTTTGCTCTCAGGTCTGTTCTCTACCCCACTCAATCCGTTATTGGGCAGTGCAGTATTCATTATGTCCTACACAAGTCCCCTCAAATACTGGGAGAGAGACTACAAgtgagtcattaagggagagcactgtagtcccagagagaccttgagggatt #### Pcnxl3_ID1175_18 --> 1 - 0 Original Alignment gTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG tggaggcacttacgtcagagtgtaaggccactgtaccttctcatctctaggTCTCTAGTTCAAAGTAAACTTTTCCCAGAGCTAGAAGAGCGGAGCCTAGAGACAGCCCAGGTGGAACCCCCAGACCCACTGCCAGAGAAGATGCATCAGTCAGTGgtcagtaggtgccagtgagtgtttaccccaacgcagctctggaaggtcta Alignment from CESAR gTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG tggaggcacttacgtcagagtgtaaggccactgtaccttctcatctctaggTCTCTAGTTCAAAGTAAACTTTTCCCAGAGCTAGAAGAGCGGAGCCTAGAGACAGCCCAGGTGGAACCCCCAGACCCACTGCCAGAGAAGATGCATCAGTCAGTGgtcagtaggtgccagtgagtgtttaccccaacgcagctctggaaggtcta Alignment from Spaln_aa2Genome GTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG tggaggcacttacgtcagagtgtaaggccactgtaccttctcatctctagGTCTCTAGTTCAAAGTAAACTTTTCCCAGAGCTAGAAGAGCGGAGCCTAGAGACAGCCCAGGTGGAACCCCCAGACCCACTGCCAGAGAAGATGCATCAGTCAGTGgtcagtaggtgccagtgagtgtttaccccaacgcagctctggaaggtcta Alignment from Spaln_nt2Genome GTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG tggaggcacttacgtcagagtgtaaggccactgtaccttctcatctctagGTCTCTAGTTCAAAGTAAACTTTTCCCAGAGCTAGAAGAGCGGAGCCTAGAGACAGCCCAGGTGGAACCCCCAGACCCACTGCCAGAGAAGATGCATCAGTCAGTGgtcagtaggtgccagtgagtgtttaccccaacgcagctctggaaggtcta Alignment from Pairagon GTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG tggaggcacttacgtcagagtgtaaggccactgtaccttctcatctctagGTCTCTAGTTCAAAGTAAACTTTTCCCAGAGCTAGAAGAGCGGAGCCTAGAGACAGCCCAGGTGGAACCCCCAGACCCACTGCCAGAGAAGATGCATCAGTCAGTGgtcagtaggtgccagtgagtgtttaccccaacgcagctctggaaggtcta Alignment from Exonerate_protein2genome GTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG tggaggcacttacgtcagagtgtaaggccactgtaccttctcatctctagGTCTCTAGTTCAAAGTAAACTTTTCCCAGAGCTAGAAGAGCGGAGCCTAGAGACAGCCCAGGTGGAACCCCCAGACCCACTGCCAGAGAAGATGCATCAGTCAGTGgtcagtaggtgccagtgagtgtttaccccaacgcagctctggaaggtcta Alignment from Exonerate_coding2genome GTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG tggaggcacttacgtcagagtgtaaggccactgtaccttctcatctctagGTCTCTAGTTCAAAGTAAACTTTTCCCAGAGCTAGAAGAGCGGAGCCTAGAGACAGCCCAGGTGGAACCCCCAGACCCACTGCCAGAGAAGATGCATCAGTCAGTGgtcagtaggtgccagtgagtgtttaccccaacgcagctctggaaggtcta Alignment from GeneWise GTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG tggaggcacttacgtcagagtgtaaggccactgtaccttctcatctctagGTCTCTAGTTCAAAGTAAACTTTTCCCAGAGCTAGAAGAGCGGAGCCTAGAGACAGCCCAGGTGGAACCCCCAGACCCACTGCCAGAGAAGATGCATCAGTCAGTGgtcagtaggtgccagtgagtgtttaccccaacgcagctctggaaggtcta #### Pcnxl3_ID1179_14 --> 0 - 1 Original Alignment GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTg tgTTCACCTT aagttcaagaatcctcattggcctatgatctaatgtcattgtgtgtttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCACTTGGGACAACTCAACCCTTCCCACCTGTCTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCAACTggtagaccagttcaagatattattgttgttcctgcctccagtaTTCACCTT Alignment from CESAR GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTg tgTTCACCTT aagttcaagaatcctcattggcctatgatctaatgtcattgtgtgtttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCACTTGGGACAACTCAACCCTTCCCACCTGTCTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCAACTggtagaccagttcaagatacacttatgttttctttgtttagtaTTCACCTT Alignment from Spaln_aa2Genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG TGTTCACCTT aagttcaagaatcctcattggcctatgatctaatgtcattgtgtgtttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCACTTGGGACAACTCAACCCTTCCCACCTGTCTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCAACTGgtagaccagttcaagatattattgttgttcctgcctccagTATTCACCTT Alignment from Spaln_nt2Genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG TGTTCACCTT aagttcaagaatcctcattggcctatgatctaatgtcattgtgtgtttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCACTTGGGACAACTCAACCCTTCCCACCTGTCTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCAACTGgtagaccagttcaagatattattgttgttcctgcctccagTATTCACCTT Alignment from Pairagon GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG TGTTCACCTT aagttcaagaatcctcattggcctatgatctaatgtcattgtgtgtttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCACTTGGGACAACTCAACCCTTCCCACCTGTCTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCAACTGgtagaccagttcaagatattattgttgttcctgcctccagTATTCACCTT Alignment from Exonerate_protein2genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG TGTTCACCTT aagttcaagaatcctcattggcctatgatctaatgtcattgtgtgtttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCACTTGGGACAACTCAACCCTTCCCACCTGTCTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCAACTGgtagaccagttcaagatattattgttgttcctgcctccagTATTCACCTT Alignment from Exonerate_coding2genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG TGTTCACCTT aagttcaagaatcctcattggcctatgatctaatgtcattgtgtgtttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCACTTGGGACAACTCAACCCTTCCCACCTGTCTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCAACTGgtagaccagttcaagatattattgttgttcctgcctccagTATTCACCTT Alignment from GeneWise GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG TGTTCACCTT aagttcaagaatcctcattggcctatgatctaatgtcattgtgtgtttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCACTTGGGACAACTCAACCCTTCCCACCTGTCTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCAACTGgtagaccagttcaagatattattgttgttcctgcctccagTATTCACCTT #### Pcnxl3_ID1184_9 --> 2 - 2 Original Alignment gtGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCAGCCAATGGAGCCtg ccatttcttctagattttctagttttttatgggaatttttccttcttaaggtGTACGACAGTCATATACCTTTGGCCTATCCGGAGGTGGCTATGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCTGCTAATGGAGCTtggtaaggacccacacggataggaccagatttgtaatggatatggttgcccc Alignment from CESAR gtGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCAGCCAATGGAGCCtg ccatttcttctagattttctagttttttatgggaatttttccttcttaaggtGTACGACAGTCATATACCTTTGGCCTATCCGGAGGTGGCTATGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCTGCTAATGGAGCTtggtaaggacccacacggataggaccagatttgtaatggatatggttgcccc Alignment from Spaln_aa2Genome GTGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCAGCCAATGGAGCCTG ccatttcttctagattttctagttttttatgggaatttttccttcttaagGTGTACGACAGTCATATACCTTTGGCCTATCCGGAGGTGGCTATGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCTGCTAATGGAGCTTGgtaaggacccacacggataggaccagatttgtaatggatatggttgcccc Alignment from Spaln_nt2Genome GTGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCAGCCAATGGAGCCTG ccatttcttctagattttctagttttttatgggaatttttccttcttaagGTGTACGACAGTCATATACCTTTGGCCTATCCGGAGGTGGCTATGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCTGCTAATGGAGCTTGgtaaggacccacacggataggaccagatttgtaatggatatggttgcccc Alignment from Pairagon GTGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCAGCCAATGGAGCCTG ccatttcttctagattttctagttttttatgggaatttttccttcttaagGTGTACGACAGTCATATACCTTTGGCCTATCCGGAGGTGGCTATGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCTGCTAATGGAGCTTGgtaaggacccacacggataggaccagatttgtaatggatatggttgcccc Alignment from Exonerate_protein2genome GTGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCAGCCAATGGAGCCTG ccatttcttctagattttctagttttttatgggaatttttccttcttaagGTGTACGACAGTCATATACCTTTGGCCTATCCGGAGGTGGCTATGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCTGCTAATGGAGCTTGgtaaggacccacacggataggaccagatttgtaatggatatggttgcccc Alignment from Exonerate_coding2genome GTGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCAGCCAATGGAGCCTG ccatttcttctagattttctagttttttatgggaatttttccttcttaagGTGTACGACAGTCATATACCTTTGGCCTATCCGGAGGTGGCTATGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCTGCTAATGGAGCTTGgtaaggacccacacggataggaccagatttgtaatggatatggttgcccc Alignment from GeneWise GTGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCAGCCAATGGAGCCTG ccatttcttctagattttctagttttttatgggaatttttccttcttaagGTGTACGACAGTCATATACCTTTGGCCTATCCGGAGGTGGCTATGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCTGCTAATGGAGCTTGgtaaggacccacacggataggaccagatttgtaatggatatggttgcccc #### Pcnxl3_ID1187_6 --> 2 - 1 Original Alignment ttGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGACCCCTCTCTCCCCAGTACGGATTCTTCCGAGCGTTCTCCCATGGCTGGAGATGGTGTCCCCTGGGGTGGGAGCGGTGTGGCTGACACTCCCATGAGCCCTTTACTGAAAGGGAGCCTCAGCCAGGAGCTAAGCAAGAGCTTTCTGACCCTGACCCGGCCTGACCGGGCCCTAGTGAGGACCAGTAGTCGGCGGGAACAATGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCGGAGGGGCTCAGGTGACCCCATGCCCCAGAAAGCTGGCTCTTCGGATTCCTGCTTCAGTGGCACTGACAGGGAGACTCTGAGCAGCTTCAAGAGTGAGAAGACTAACTCTACACACCTCGACAGTCCCCCTGGTGGGCATGCT---CCCGAGGGCAGCGACACAGACCCTCCTTCTGAGGCTGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGACACACTTCGTTCCTTTGACACAGTCATTGGAGCAGGGACACCACCGGGCCAAACGGAGCCGCTCCTGGTTGTGCGGCCCAAGGACTTGGCCCTGCTTCGGCCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCGTACCCCAAGACGGCCCTTGCTTGAGGGCTCAGGCTTCTTTGAAGATGAAGATACCAGTGAAGGTAGTGAGCTGAGTCCAGCATCCAGTCTCCGGTCTCAGCGCCGCTATAGCACTGATAGCTCCTCGTCTACTTCTTGCTACTCCCCCGAGAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCGGGCCCCTCATGGGGCCGAAGAAGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACCCAGCGGACGCCCAGTACTGCCAGTGCCAAAACTCATGCCCGTGTGTTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCGGGCTCCAAGGCTGAGCTGGAGGCCCAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGTGTTGCCTCCTGAAGCCCGGAGGGGACCCGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAGGAGGAAGGTGCTGTAGGGGGAg tgttgtccttctaatttctatgcaactactagctgtcaccttccctctagttGGAGATCTTCCCCAGACACCACCAGGGGTTGTTCCAGATCCTGCTCTTCCGAGTACAGATTCTTCAGAACGATCCCCAATGGCGGGGGATGGGGTCCCCTGGGGGGGGAGTGGAGTGGCTGACACACCTATGAGCCCTTTGCTGAAAGGGAGCCTCAGCCAAGAGCTAAGCAAGACCTTTCTTACCCTGACACAGCCTGATCAGGCACTAGTAAGGACAAGTAGTCGGCGGGAACGATGTCGGGGAACTGGAGGCTACCAGCCCTTGGACCAGAGGGGCTCAGGTGACCCTATGCCCCAAAAAGCTGGATCCTCAGACTCCTGCTTCAGTGGTACAGAAAGGGAGACTCTAAGCTGCTTTAAAAGTGAGAAGACCAACTCTACACACCTTGACAGCCCACCTGGTGGGCATGCCCCTCCTGAGGGTAGTGACACAGACCCTCCTTCTGAGGTAGAGCTTCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGTTGATGCACTTCATTCCTTTGACACCATCATTGGAGCAGGGACACCATCTGGCCAAACAGAACCACTCTTGGTGGTGCAACCTAAAGATTTGGCTCTACTTCCACCTAGTAAGCGGCGGCCCCCC---CGAGAACATTCCCCACCTGGTCATACCCCAAGACGGTCTGTGCTTGAGGGATCAGGATTTTTTGAAGATGAAGATACCAGTGAAGGCGGTGAATTGACCCCAGCATCCAGTCTGCGGTCCAAGCTCCGCTATAGCACAGATAGTTCATCCTCCACTTCTTGCTACTCACCTGAAAGCTCACAGGGTTCGGCAGGGGGTCCTCGGAAGCGGCAGGCGCCGCATGGAGCTGAAGAAGGAACTGCTGTGCCCCCTAAACGACCCTATGGGACACAACGGAGTCCGAGTGCTGCCAGTGCAAAAACTCATGCCCGTGTGTTGAGCATGGATGGAGCAGGGGGTGATGTCTTACGGGCACTCCTTGCCGGTTCTAAAGCTGAGTTGGATGCTAAGCCAGGGATGGAGCTGGCTGCTGGTGAGCCTGCGGGGTCACCACCTGAGGCCCGAAGGGGACCTGCCACCAACCAGCCTGGCTGGCGGGGAGAGTTGCAAGAGCAAGGAGCTGTAGGAGGGggtaagagtctgctggagcatgttaacaagggcaaccttgtagagtttttt Alignment from CESAR ttGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGACCCCTCTCTCCCCAGTACGGATTCTTCCGAGCGTTCTCCCATGGCTGGAGATGGTGTCCCCTGGGGTGGGAGCGGTGTGGCTGACACTCCCATGAGCCCTTTACTGAAAGGGAGCCTCAGCCAGGAGCTAAGCAAGAGCTTTCTGACCCTGACCCGGCCTGACCGGGCCCTAGTGAGGACCAGTAGTCGGCGGGAACAATGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCGGAGGGGCTCAGGTGACCCCATGCCCCAGAAAGCTGGCTCTTCGGATTCCTGCTTCAGTGGCACTGACAGGGAGACTCTGAGCAGCTTCAAGAGTGAGAAGACTAACTCTACACACCTCGACAGTCCCCCTGGTGGGCATGCT---CCCGAGGGCAGCGACACAGACCCTCCTTCTGAGGCTGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGACACACTTCGTTCCTTTGACACAGTCATTGGAGCAGGGACACCACCGGGCCAAACGGAGCCGCTCCTGGTTGTGCGGCCCAAGGACTTGGCCCTGCTTCGGCCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCGTACCCCAAGACGGCCCTTGCTTGAGGGCTCAGGCTTCTTTGAAGATGAAGATACCAGTGAAGGTAGTGAGCTGAGTCCAGCATCCAGTCTCCGGTCTCAGCGCCGCTATAGCACTGATAGCTCCTCGTCTACTTCTTGCTACTCCCCCGAGAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCGGGCCCCTCATGGGGCCGAAGAAGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACCCAGCGGACGCCCAGTACTGCCAGTGCCAAAACTCATGCCCGTGTGTTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCGGGCTCCAAGGCTGAGCTGGAGGCCCAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGTGTTGCCTCCTGAAGCCCGGAGGGGACCCGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAGGAGGAAGGTGCTGTAGGGGGAg tgttgtccttctaatttctatgcaactactagctgtcaccttccctctagttGGAGATCTTCCCCAGACACCACCAGGGGTTGTTCCAGATCCTGCTCTTCCGAGTACAGATTCTTCAGAACGATCCCCAATGGCGGGGGATGGGGTCCCCTGGGGGGGGAGTGGAGTGGCTGACACACCTATGAGCCCTTTGCTGAAAGGGAGCCTCAGCCAAGAGCTAAGCAAGACCTTTCTTACCCTGACACAGCCTGATCAGGCACTAGTAAGGACAAGTAGTCGGCGGGAACGATGTCGGGGAACTGGAGGCTACCAGCCCTTGGACCAGAGGGGCTCAGGTGACCCTATGCCCCAAAAAGCTGGATCCTCAGACTCCTGCTTCAGTGGTACAGAAAGGGAGACTCTAAGCTGCTTTAAAAGTGAGAAGACCAACTCTACACACCTTGACAGCCCACCTGGTGGGCATGCCCCTCCTGAGGGTAGTGACACAGACCCTCCTTCTGAGGTAGAGCTTCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGTTGATGCACTTCATTCCTTTGACACCATCATTGGAGCAGGGACACCATCTGGCCAAACAGAACCACTCTTGGTGGTGCAACCTAAAGATTTGGCTCTACTTCCACCTAGTAAGCGGCGGCCCCCC---CGAGAACATTCCCCACCTGGTCATACCCCAAGACGGTCTGTGCTTGAGGGATCAGGATTTTTTGAAGATGAAGATACCAGTGAAGGCGGTGAATTGACCCCAGCATCCAGTCTGCGGTCCAAGCTCCGCTATAGCACAGATAGTTCATCCTCCACTTCTTGCTACTCACCTGAAAGCTCACAGGGTTCGGCAGGGGGTCCTCGGAAGCGGCAGGCGCCGCATGGAGCTGAAGAAGGAACTGCTGTGCCCCCTAAACGACCCTATGGGACACAACGGAGTCCGAGTGCTGCCAGTGCAAAAACTCATGCCCGTGTGTTGAGCATGGATGGAGCAGGGGGTGATGTCTTACGGGCACTCCTTGCCGGTTCTAAAGCTGAGTTGGATGCTAAGCCAGGGATGGAGCTGGCTGCTGGTGAGCCTGCGGGGTCACCACCTGAGGCCCGAAGGGGACCTGCCACCAACCAGCCTGGCTGGCGGGGAGAGTTGCAAGAGCAAGGAGCTGTAGGAGGGggtaagagtctgctggagcatgttaacaagggcaaccttgtagagtttttt Alignment from Spaln_aa2Genome TTGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGACCCCTCTCTCCCCAGTACGGATTCTTCCGAGCGTTCTCCCATGGCTGGAGATGGTGTCCCCTGGGGTGGGAGCGGTGTGGCTGACACTCCCATGAGCCCTTTACTGAAAGGGAGCCTCAGCCAGGAGCTAAGCAAGAGCTTTCTGACCCTGACCCGGCCTGACCGGGCCCTAGTGAGGACCAGTAGTCGGCGGGAACAATGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCGGAGGGGCTCAGGTGACCCCATGCCCCAGAAAGCTGGCTCTTCGGATTCCTGCTTCAGTGGCACTGACAGGGAGACTCTGAGCAGCTTCAAGAGTGAGAAGACTAACTCTACACACCTCGACAGTCCCCCTGGTGGGCATGCT---CCCGAGGGCAGCGACACAGACCCTCCTTCTGAGGCTGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGACACACTTCGTTCCTTTGACACAGTCATTGGAGCAGGGACACCACCGGGCCAAACGGAGCCGCTCCTGGTTGTGCGGCCCAAGGACTTGGCCCTGCTTCGGCCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCGTACCCCAAGACGGCCCTTGCTTGAGGGCTCAGGCTTCTTTGAAGATGAAGATACCAGTGAAGGTAGTGAGCTGAGTCCAGCATCCAGTCTCCGGTCTCAGCGCCGCTATAGCACTGATAGCTCCTCGTCTACTTCTTGCTACTCCCCCGAGAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCGGGCCCCTCATGGGGCCGAAGAAGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACCCAGCGGACGCCCAGTACTGCCAGTGCCAAAACTCATGCCCGTGTGTTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCGGGCTCCAAGGCTGAGCTGGAGGCCCAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGTGTTGCCTCCTGAAGCCCGGAGGGGACCCGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAGGAGGAAGGTGCTGTAGGGGGAG tgttgtccttctaatttctatgcaactactagctgtcaccttccctctagTTGGAGATCTTCCCCAGACACCACCAGGGGTTGTTCCAGATCCTGCTCTTCCGAGTACAGATTCTTCAGAACGATCCCCAATGGCGGGGGATGGGGTCCCCTGGGGGGGGAGTGGAGTGGCTGACACACCTATGAGCCCTTTGCTGAAAGGGAGCCTCAGCCAAGAGCTAAGCAAGACCTTTCTTACCCTGACACAGCCTGATCAGGCACTAGTAAGGACAAGTAGTCGGCGGGAACGATGTCGGGGAACTGGAGGCTACCAGCCCTTGGACCAGAGGGGCTCAGGTGACCCTATGCCCCAAAAAGCTGGATCCTCAGACTCCTGCTTCAGTGGTACAGAAAGGGAGACTCTAAGCTGCTTTAAAAGTGAGAAGACCAACTCTACACACCTTGACAGCCCACCTGGTGGGCATGCCCCTCCTGAGGGTAGTGACACAGACCCTCCTTCTGAGGTAGAGCTTCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGTTGATGCACTTCATTCCTTTGACACCATCATTGGAGCAGGGACACCATCTGGCCAAACAGAACCACTCTTGGTGGTGCAACCTAAAGATTTGGCTCTACTTCCACCTAGTAAGCGGCGGCCCCCC---CGAGAACATTCCCCACCTGGTCATACCCCAAGACGGTCTGTGCTTGAGGGATCAGGATTTTTTGAAGATGAAGATACCAGTGAAGGCGGTGAATTGACCCCAGCATCCAGTCTGCGGTCCAAGCTCCGCTATAGCACAGATAGTTCATCCTCCACTTCTTGCTACTCACCTGAAAGCTCACAGGGTTCGGCAGGGGGTCCTCGGAAGCGGCAGGCGCCGCATGGAGCTGAAGAAGGAACTGCTGTGCCCCCTAAACGACCCTATGGGACACAACGGAGTCCGAGTGCTGCCAGTGCAAAAACTCATGCCCGTGTGTTGAGCATGGATGGAGCAGGGGGTGATGTCTTACGGGCACTCCTTGCCGGTTCTAAAGCTGAGTTGGATGCTAAGCCAGGGATGGAGCTGGCTGCTGGTGAGCCTGCGGGGTCACCACCTGAGGCCCGAAGGGGACCTGCCACCAACCAGCCTGGCTGGCGGGGAGAGTTGCAAGAGCAAGGAGCTGTAGGAGGGGgtaagagtctgctggagcatgttaacaagggcaaccttgtagagtttttt Alignment from Spaln_nt2Genome TTGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGACCCCTCTCTCCCCAGTACGGATTCTTCCGAGCGTTCTCCCATGGCTGGAGATGGTGTCCCCTGGGGTGGGAGCGGTGTGGCTGACACTCCCATGAGCCCTTTACTGAAAGGGAGCCTCAGCCAGGAGCTAAGCAAGAGCTTTCTGACCCTGACCCGGCCTGACCGGGCCCTAGTGAGGACCAGTAGTCGGCGGGAACAATGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCGGAGGGGCTCAGGTGACCCCATGCCCCAGAAAGCTGGCTCTTCGGATTCCTGCTTCAGTGGCACTGACAGGGAGACTCTGAGCAGCTTCAAGAGTGAGAAGACTAACTCTACACACCTCGACAGTCCCCCTGGTGGGCATGC---TCCCGAGGGCAGCGACACAGACCCTCCTTCTGAGGCTGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGACACACTTCGTTCCTTTGACACAGTCATTGGAGCAGGGACACCACCGGGCCAAACGGAGCCGCTCCTGGTTGTGCGGCCCAAGGACTTGGCCCTGCTTCGGCCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCGTACCCCAAGACGGCCCTTGCTTGAGGGCTCAGGCTTCTTTGAAGATGAAGATACCAGTGAAGGTAGTGAGCTGAGTCCAGCATCCAGTCTCCGGTCTCAGCGCCGCTATAGCACTGATAGCTCCTCGTCTACTTCTTGCTACTCCCCCGAGAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCGGGCCCCTCATGGGGCCGAAGAAGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACCCAGCGGACGCCCAGTACTGCCAGTGCCAAAACTCATGCCCGTGTGTTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCGGGCTCCAAGGCTGAGCTGGAGGCCCAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGTGTTGCCTCCTGAAGCCCGGAGGGGACCCGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAGGAGGAAGGTGCTGTAGGGGGAG tgttgtccttctaatttctatgcaactactagctgtcaccttccctctagTTGGAGATCTTCCCCAGACACCACCAGGGGTTGTTCCAGATCCTGCTCTTCCGAGTACAGATTCTTCAGAACGATCCCCAATGGCGGGGGATGGGGTCCCCTGGGGGGGGAGTGGAGTGGCTGACACACCTATGAGCCCTTTGCTGAAAGGGAGCCTCAGCCAAGAGCTAAGCAAGACCTTTCTTACCCTGACACAGCCTGATCAGGCACTAGTAAGGACAAGTAGTCGGCGGGAACGATGTCGGGGAACTGGAGGCTACCAGCCCTTGGACCAGAGGGGCTCAGGTGACCCTATGCCCCAAAAAGCTGGATCCTCAGACTCCTGCTTCAGTGGTACAGAAAGGGAGACTCTAAGCTGCTTTAAAAGTGAGAAGACCAACTCTACACACCTTGACAGCCCACCTGGTGGGCATGCCCCTCCTGAGGGTAGTGACACAGACCCTCCTTCTGAGGTAGAGCTTCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGTTGATGCACTTCATTCCTTTGACACCATCATTGGAGCAGGGACACCATCTGGCCAAACAGAACCACTCTTGGTGGTGCAACCTAAAGATTTGGCTCTACTTCCACCTAGTAAGCGGCGGCCCCCC---CGAGAACATTCCCCACCTGGTCATACCCCAAGACGGTCTGTGCTTGAGGGATCAGGATTTTTTGAAGATGAAGATACCAGTGAAGGCGGTGAATTGACCCCAGCATCCAGTCTGCGGTCCAAGCTCCGCTATAGCACAGATAGTTCATCCTCCACTTCTTGCTACTCACCTGAAAGCTCACAGGGTTCGGCAGGGGGTCCTCGGAAGCGGCAGGCGCCGCATGGAGCTGAAGAAGGAACTGCTGTGCCCCCTAAACGACCCTATGGGACACAACGGAGTCCGAGTGCTGCCAGTGCAAAAACTCATGCCCGTGTGTTGAGCATGGATGGAGCAGGGGGTGATGTCTTACGGGCACTCCTTGCCGGTTCTAAAGCTGAGTTGGATGCTAAGCCAGGGATGGAGCTGGCTGCTGGTGAGCCTGCGGGGTCACCACCTGAGGCCCGAAGGGGACCTGCCACCAACCAGCCTGGCTGGCGGGGAGAGTTGCAAGAGCAAGGAGCTGTAGGAGGGGgtaagagtctgctggagcatgttaacaagggcaaccttgtagagtttttt Alignment from Pairagon TTGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGACCCCTCTCTCCCCAGTACGGATTCTTCCGAGCGTTCTCCCATGGCTGGAGATGGTGTCCCCTGGGGTGGGAGCGGTGTGGCTGACACTCCCATGAGCCCTTTACTGAAAGGGAGCCTCAGCCAGGAGCTAAGCAAGAGCTTTCTGACCCTGACCCGGCCTGACCGGGCCCTAGTGAGGACCAGTAGTCGGCGGGAACAATGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCGGAGGGGCTCAGGTGACCCCATGCCCCAGAAAGCTGGCTCTTCGGATTCCTGCTTCAGTGGCACTGACAGGGAGACTCTGAGCAGCTTCAAGAGTGAGAAGACTAACTCTACACACCTCGACAGTCCCCCTGGTGGGCATG---CTCCCGAGGGCAGCGACACAGACCCTCCTTCTGAGGCTGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGACACACTTCGTTCCTTTGACACAGTCATTGGAGCAGGGACACCACCGGGCCAAACGGAGCCGCTCCTGGTTGTGCGGCCCAAGGACTTGGCCCTGCTTCGGCCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCGTACCCCAAGACGGCCCTTGCTTGAGGGCTCAGGCTTCTTTGAAGATGAAGATACCAGTGAAGGTAGTGAGCTGAGTCCAGCATCCAGTCTCCGGTCTCAGCGCCGCTATAGCACTGATAGCTCCTCGTCTACTTCTTGCTACTCCCCCGAGAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCGGGCCCCTCATGGGGCCGAAGAAGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACCCAGCGGACGCCCAGTACTGCCAGTGCCAAAACTCATGCCCGTGTGTTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCGGGCTCCAAGGCTGAGCTGGAGGCCCAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGTGTTGCCTCCTGAAGCCCGGAGGGGACCCGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAGGAGGAAGGTGCTGTAGGGGGAG tgttgtccttctaatttctatgcaactactagctgtcaccttccctctagTTGGAGATCTTCCCCAGACACCACCAGGGGTTGTTCCAGATCCTGCTCTTCCGAGTACAGATTCTTCAGAACGATCCCCAATGGCGGGGGATGGGGTCCCCTGGGGGGGGAGTGGAGTGGCTGACACACCTATGAGCCCTTTGCTGAAAGGGAGCCTCAGCCAAGAGCTAAGCAAGACCTTTCTTACCCTGACACAGCCTGATCAGGCACTAGTAAGGACAAGTAGTCGGCGGGAACGATGTCGGGGAACTGGAGGCTACCAGCCCTTGGACCAGAGGGGCTCAGGTGACCCTATGCCCCAAAAAGCTGGATCCTCAGACTCCTGCTTCAGTGGTACAGAAAGGGAGACTCTAAGCTGCTTTAAAAGTGAGAAGACCAACTCTACACACCTTGACAGCCCACCTGGTGGGCATGCCCCTCCTGAGGGTAGTGACACAGACCCTCCTTCTGAGGTAGAGCTTCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGTTGATGCACTTCATTCCTTTGACACCATCATTGGAGCAGGGACACCATCTGGCCAAACAGAACCACTCTTGGTGGTGCAACCTAAAGATTTGGCTCTACTTCCACCTAGTAAGCGGCGGCCCCCC---CGAGAACATTCCCCACCTGGTCATACCCCAAGACGGTCTGTGCTTGAGGGATCAGGATTTTTTGAAGATGAAGATACCAGTGAAGGCGGTGAATTGACCCCAGCATCCAGTCTGCGGTCCAAGCTCCGCTATAGCACAGATAGTTCATCCTCCACTTCTTGCTACTCACCTGAAAGCTCACAGGGTTCGGCAGGGGGTCCTCGGAAGCGGCAGGCGCCGCATGGAGCTGAAGAAGGAACTGCTGTGCCCCCTAAACGACCCTATGGGACACAACGGAGTCCGAGTGCTGCCAGTGCAAAAACTCATGCCCGTGTGTTGAGCATGGATGGAGCAGGGGGTGATGTCTTACGGGCACTCCTTGCCGGTTCTAAAGCTGAGTTGGATGCTAAGCCAGGGATGGAGCTGGCTGCTGGTGAGCCTGCGGGGTCACCACCTGAGGCCCGAAGGGGACCTGCCACCAACCAGCCTGGCTGGCGGGGAGAGTTGCAAGAGCAAGGAGCTGTAGGAGGGGgtaagagtctgctggagcatgttaacaagggcaaccttgtagagtttttt Alignment from Exonerate_protein2genome TTGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGACCCCTCTCTCCCCAGTACGGATTCTTCCGAGCGTTCTCCCATGGCTGGAGATGGTGTCCCCTGGGGTGGGAGCGGTGTGGCTGACACTCCCATGAGCCCTTTACTGAAAGGGAGCCTCAGCCAGGAGCTAAGCAAGAGCTTTCTGACCCTGACCCGGCCTGACCGGGCCCTAGTGAGGACCAGTAGTCGGCGGGAACAATGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCGGAGGGGCTCAGGTGACCCCATGCCCCAGAAAGCTGGCTCTTCGGATTCCTGCTTCAGTGGCACTGACAGGGAGACTCTGAGCAGCTTCAAGAGTGAGAAGACTAACTCTACACACCTCGACAGTCCCCCTGGTGGGCATGCT---CCCGAGGGCAGCGACACAGACCCTCCTTCTGAGGCTGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGACACACTTCGTTCCTTTGACACAGTCATTGGAGCAGGGACACCACCGGGCCAAACGGAGCCGCTCCTGGTTGTGCGGCCCAAGGACTTGGCCCTGCTTCGGCCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCGTACCCCAAGACGGCCCTTGCTTGAGGGCTCAGGCTTCTTTGAAGATGAAGATACCAGTGAAGGTAGTGAGCTGAGTCCAGCATCCAGTCTCCGGTCTCAGCGCCGCTATAGCACTGATAGCTCCTCGTCTACTTCTTGCTACTCCCCCGAGAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCGGGCCCCTCATGGGGCCGAAGAAGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACCCAGCGGACGCCCAGTACTGCCAGTGCCAAAACTCATGCCCGTGTGTTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCGGGCTCCAAGGCTGAGCTGGAGGCCCAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGTGTTGCCTCCTGAAGCCCGGAGGGGACCCGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAGGAGGAAGGTGCTGTAGGGGGAG tgttgtccttctaatttctatgcaactactagctgtcaccttccctctagTTGGAGATCTTCCCCAGACACCACCAGGGGTTGTTCCAGATCCTGCTCTTCCGAGTACAGATTCTTCAGAACGATCCCCAATGGCGGGGGATGGGGTCCCCTGGGGGGGGAGTGGAGTGGCTGACACACCTATGAGCCCTTTGCTGAAAGGGAGCCTCAGCCAAGAGCTAAGCAAGACCTTTCTTACCCTGACACAGCCTGATCAGGCACTAGTAAGGACAAGTAGTCGGCGGGAACGATGTCGGGGAACTGGAGGCTACCAGCCCTTGGACCAGAGGGGCTCAGGTGACCCTATGCCCCAAAAAGCTGGATCCTCAGACTCCTGCTTCAGTGGTACAGAAAGGGAGACTCTAAGCTGCTTTAAAAGTGAGAAGACCAACTCTACACACCTTGACAGCCCACCTGGTGGGCATGCCCCTCCTGAGGGTAGTGACACAGACCCTCCTTCTGAGGTAGAGCTTCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGTTGATGCACTTCATTCCTTTGACACCATCATTGGAGCAGGGACACCATCTGGCCAAACAGAACCACTCTTGGTGGTGCAACCTAAAGATTTGGCTCTACTTCCACCTAGTAAGCGGCGGCCCCCC---CGAGAACATTCCCCACCTGGTCATACCCCAAGACGGTCTGTGCTTGAGGGATCAGGATTTTTTGAAGATGAAGATACCAGTGAAGGCGGTGAATTGACCCCAGCATCCAGTCTGCGGTCCAAGCTCCGCTATAGCACAGATAGTTCATCCTCCACTTCTTGCTACTCACCTGAAAGCTCACAGGGTTCGGCAGGGGGTCCTCGGAAGCGGCAGGCGCCGCATGGAGCTGAAGAAGGAACTGCTGTGCCCCCTAAACGACCCTATGGGACACAACGGAGTCCGAGTGCTGCCAGTGCAAAAACTCATGCCCGTGTGTTGAGCATGGATGGAGCAGGGGGTGATGTCTTACGGGCACTCCTTGCCGGTTCTAAAGCTGAGTTGGATGCTAAGCCAGGGATGGAGCTGGCTGCTGGTGAGCCTGCGGGGTCACCACCTGAGGCCCGAAGGGGACCTGCCACCAACCAGCCTGGCTGGCGGGGAGAGTTGCAAGAGCAAGGAGCTGTAGGAGGGGgtaagagtctgctggagcatgttaacaagggcaaccttgtagagtttttt Alignment from Exonerate_coding2genome TTGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGACCCCTCTCTCCCCAGTACGGATTCTTCCGAGCGTTCTCCCATGGCTGGAGATGGTGTCCCCTGGGGTGGGAGCGGTGTGGCTGACACTCCCATGAGCCCTTTACTGAAAGGGAGCCTCAGCCAGGAGCTAAGCAAGAGCTTTCTGACCCTGACCCGGCCTGACCGGGCCCTAGTGAGGACCAGTAGTCGGCGGGAACAATGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCGGAGGGGCTCAGGTGACCCCATGCCCCAGAAAGCTGGCTCTTCGGATTCCTGCTTCAGTGGCACTGACAGGGAGACTCTGAGCAGCTTCAAGAGTGAGAAGACTAACTCTACACACCTCGACAGTCCCCCTGGTGGGCATGCT---CCCGAGGGCAGCGACACAGACCCTCCTTCTGAGGCTGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGACACACTTCGTTCCTTTGACACAGTCATTGGAGCAGGGACACCACCGGGCCAAACGGAGCCGCTCCTGGTTGTGCGGCCCAAGGACTTGGCCCTGCTTCGGCCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCGTACCCCAAGACGGCCCTTGCTTGAGGGCTCAGGCTTCTTTGAAGATGAAGATACCAGTGAAGGTAGTGAGCTGAGTCCAGCATCCAGTCTCCGGTCTCAGCGCCGCTATAGCACTGATAGCTCCTCGTCTACTTCTTGCTACTCCCCCGAGAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCGGGCCCCTCATGGGGCCGAAGAAGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACCCAGCGGACGCCCAGTACTGCCAGTGCCAAAACTCATGCCCGTGTGTTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCGGGCTCCAAGGCTGAGCTGGAGGCCCAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGTGTTGCCTCCTGAAGCCCGGAGGGGACCCGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAGGAGGAAGGTGCTGTAGGGGGAG tgttgtccttctaatttctatgcaactactagctgtcaccttccctctagTTGGAGATCTTCCCCAGACACCACCAGGGGTTGTTCCAGATCCTGCTCTTCCGAGTACAGATTCTTCAGAACGATCCCCAATGGCGGGGGATGGGGTCCCCTGGGGGGGGAGTGGAGTGGCTGACACACCTATGAGCCCTTTGCTGAAAGGGAGCCTCAGCCAAGAGCTAAGCAAGACCTTTCTTACCCTGACACAGCCTGATCAGGCACTAGTAAGGACAAGTAGTCGGCGGGAACGATGTCGGGGAACTGGAGGCTACCAGCCCTTGGACCAGAGGGGCTCAGGTGACCCTATGCCCCAAAAAGCTGGATCCTCAGACTCCTGCTTCAGTGGTACAGAAAGGGAGACTCTAAGCTGCTTTAAAAGTGAGAAGACCAACTCTACACACCTTGACAGCCCACCTGGTGGGCATGCCCCTCCTGAGGGTAGTGACACAGACCCTCCTTCTGAGGTAGAGCTTCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGTTGATGCACTTCATTCCTTTGACACCATCATTGGAGCAGGGACACCATCTGGCCAAACAGAACCACTCTTGGTGGTGCAACCTAAAGATTTGGCTCTACTTCCACCTAGTAAGCGGCGGCCCCCC---CGAGAACATTCCCCACCTGGTCATACCCCAAGACGGTCTGTGCTTGAGGGATCAGGATTTTTTGAAGATGAAGATACCAGTGAAGGCGGTGAATTGACCCCAGCATCCAGTCTGCGGTCCAAGCTCCGCTATAGCACAGATAGTTCATCCTCCACTTCTTGCTACTCACCTGAAAGCTCACAGGGTTCGGCAGGGGGTCCTCGGAAGCGGCAGGCGCCGCATGGAGCTGAAGAAGGAACTGCTGTGCCCCCTAAACGACCCTATGGGACACAACGGAGTCCGAGTGCTGCCAGTGCAAAAACTCATGCCCGTGTGTTGAGCATGGATGGAGCAGGGGGTGATGTCTTACGGGCACTCCTTGCCGGTTCTAAAGCTGAGTTGGATGCTAAGCCAGGGATGGAGCTGGCTGCTGGTGAGCCTGCGGGGTCACCACCTGAGGCCCGAAGGGGACCTGCCACCAACCAGCCTGGCTGGCGGGGAGAGTTGCAAGAGCAAGGAGCTGTAGGAGGGGgtaagagtctgctggagcatgttaacaagggcaaccttgtagagtttttt Alignment from GeneWise TTGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGACCCCTCTCTCCCCAGTACGGATTCTTCCGAGCGTTCTCCCATGGCTGGAGATGGTGTCCCCTGGGGTGGGAGCGGTGTGGCTGACACTCCCATGAGCCCTTTACTGAAAGGGAGCCTCAGCCAGGAGCTAAGCAAGAGCTTTCTGACCCTGACCCGGCCTGACCGGGCCCTAGTGAGGACCAGTAGTCGGCGGGAACAATGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCGGAGGGGCTCAGGTGACCCCATGCCCCAGAAAGCTGGCTCTTCGGATTCCTGCTTCAGTGGCACTGACAGGGAGACTCTGAGCAGCTTCAAGAGTGAGAAGACTAACTCTACACACCTCGACAGTCCCCCTGGTGGGCATGCTCCC---GAGGGCAGCGACACAGACCCTCCTTCTGAGGCTGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGACACACTTCGTTCCTTTGACACAGTCATTGGAGCAGGGACACCACCGGGCCAAACGGAGCCGCTCCTGGTTGTGCGGCCCAAGGACTTGGCCCTGCTTCGGCCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCGTACCCCAAGACGGCCCTTGCTTGAGGGCTCAGGCTTCTTTGAAGATGAAGATACCAGTGAAGGTAGTGAGCTGAGTCCAGCATCCAGTCTCCGGTCTCAGCGCCGCTATAGCACTGATAGCTCCTCGTCTACTTCTTGCTACTCCCCCGAGAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCGGGCCCCTCATGGGGCCGAAGAAGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACCCAGCGGACGCCCAGTACTGCCAGTGCCAAAACTCATGCCCGTGTGTTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCGGGCTCCAAGGCTGAGCTGGAGGCCCAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGTGTTGCCTCCTGAAGCCCGGAGGGGACCCGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAGGAGGAAGGTGCTGTAGGGGGAG tgttgtccttctaatttctatgcaactactagctgtcaccttccctctagTTGGAGATCTTCCCCAGACACCACCAGGGGTTGTTCCAGATCCTGCTCTTCCGAGTACAGATTCTTCAGAACGATCCCCAATGGCGGGGGATGGGGTCCCCTGGGGGGGGAGTGGAGTGGCTGACACACCTATGAGCCCTTTGCTGAAAGGGAGCCTCAGCCAAGAGCTAAGCAAGACCTTTCTTACCCTGACACAGCCTGATCAGGCACTAGTAAGGACAAGTAGTCGGCGGGAACGATGTCGGGGAACTGGAGGCTACCAGCCCTTGGACCAGAGGGGCTCAGGTGACCCTATGCCCCAAAAAGCTGGATCCTCAGACTCCTGCTTCAGTGGTACAGAAAGGGAGACTCTAAGCTGCTTTAAAAGTGAGAAGACCAACTCTACACACCTTGACAGCCCACCTGGTGGGCATGCCCCTCCTGAGGGTAGTGACACAGACCCTCCTTCTGAGGTAGAGCTTCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGTTGATGCACTTCATTCCTTTGACACCATCATTGGAGCAGGGACACCATCTGGCCAAACAGAACCACTCTTGGTGGTGCAACCTAAAGATTTGGCTCTACTTCCACCTAGTAAGCGGCGGCCCCCC---CGAGAACATTCCCCACCTGGTCATACCCCAAGACGGTCTGTGCTTGAGGGATCAGGATTTTTTGAAGATGAAGATACCAGTGAAGGCGGTGAATTGACCCCAGCATCCAGTCTGCGGTCCAAGCTCCGCTATAGCACAGATAGTTCATCCTCCACTTCTTGCTACTCACCTGAAAGCTCACAGGGTTCGGCAGGGGGTCCTCGGAAGCGGCAGGCGCCGCATGGAGCTGAAGAAGGAACTGCTGTGCCCCCTAAACGACCCTATGGGACACAACGGAGTCCGAGTGCTGCCAGTGCAAAAACTCATGCCCGTGTGTTGAGCATGGATGGAGCAGGGGGTGATGTCTTACGGGCACTCCTTGCCGGTTCTAAAGCTGAGTTGGATGCTAAGCCAGGGATGGAGCTGGCTGCTGGTGAGCCTGCGGGGTCACCACCTGAGGCCCGAAGGGGACCTGCCACCAACCAGCCTGGCTGGCGGGGAGAGTTGCAAGAGCAAGGAGCTGTAGGAGGGGgtaagagtctgctggagcatgttaacaagggcaaccttgtagagtttttt #### Pcnxl3_ID1189_4 --> 0 - 1 Original Alignment GAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAg tcaactgcaagtatgggcttgctacagtccctttgctcttgttccagaagAAGTTGCTACCACGGATGGAGGATTCTGGACCTCTCAGAggtaagttgcatcagtccttttggcatgacggtcattgtgtggtgttgaat Alignment from CESAR GAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAg tcaactgcaagtatgggcttgctacagtccctttgctcttgttccagaagAAGTTGCTACCACGGATGGAGGATTCTGGACCTCTCAGAggtaagttgcatcagtccttttggcatgacggtcattgtgtggtgttgaat Alignment from Spaln_aa2Genome GAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAG tcaactgcaagtatgggcttgctacagtccctttgctcttgttccagaagAAGTTGCTACCACGGATGGAGGATTCTGGACCTCTCAGAGgtaagttgcatcagtccttttggcatgacggtcattgtgtggtgttgaat Alignment from Spaln_nt2Genome --GGAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAG tcaactgcaagtatgggcttgctacagtccctttgctcttgttccagAAGAAGTTGCTACCACGGATGGAGGATTCTGGACCTCTCAGAGgtaagttgcatcagtccttttggcatgacggtcattgtgtggtgttgaat Alignment from Pairagon TTC-------------------GGAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAG tcaactgcaagtatgggcttgctacagTCCCTTTGCTCTTGTTCCAGAAGAAGTTGCTACCACGGATGGAGGATTCTGGACCTCTCAGAGgtaagttgcatcagtccttttggcatgacggtcattgtgtggtgttgaat Alignment from Exonerate_protein2genome GAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAG tcaactgcaagtatgggcttgctacagtccctttgctcttgttccagaagAAGTTGCTACCACGGATGGAGGATTCTGGACCTCTCAGAGgtaagttgcatcagtccttttggcatgacggtcattgtgtggtgttgaat Alignment from Exonerate_coding2genome ACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCGGAG----TTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAG TCAACTGCAAGTATGGGCTTGCTACAGTCCCTTTGCTCTTGTTCCAGAAGAAGTTGCTACCACGGATGGAGGATTCTGGACCTCTCAGAGgtaagttgcatcagtccttttggcatgacggtcattgtgtggtgttgaat Alignment from GeneWise GAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAG tcaactgcaagtatgggcttgctacagtccctttgctcttgttccagaagAAGTTGCTACCACGGATGGAGGATTCTGGACCTCTCAGAGgtaagttgcatcagtccttttggcatgacggtcattgtgtggtgttgaat #### Pcsk5_ID4231_36 --> 2 - 0 Original Alignment gaAAGGAGGCGTGGAGTTGCTTGTCCTGTGTGTGGAGCTACCACCTTCTGAAAGGAATCTGCATCCCAGAATGTATCGTAGGGGAATACAGAGAGGGAAAG aaaatctacttcataatgtactctagttctctttgccttctctttttcagggAAGGAGGCATGGAGTTGCTTGCCGTGTGTGTGGAGCTACCACCTTCTGGAAGGAATCTGCATTCCAGAATGTATTGTAGGGGAATACAGAGAGGGAAAGgtaagtagacttgggggtggtaggagtatttcaccctcactgggctccct Alignment from CESAR gaAAGGAGGCGTGGAGTTGCTTGTCCTGTGTGTGGAGCTACCACCTTCTGAAAGGAATCTGCATCCCAGAATGTATCGTAGGGGAATACAGAGAGGGAAAG aaaatctacttcataatgtactctagttctctttgccttctctttttcagggAAGGAGGCATGGAGTTGCTTGCCGTGTGTGTGGAGCTACCACCTTCTGGAAGGAATCTGCATTCCAGAATGTATTGTAGGGGAATACAGAGAGGGAAAGgtaagtagacttgggggtggtaggagtatttcaccctcactgggctccct Alignment from Spaln_aa2Genome AGCGGAAAGGAGGCGTGGAGTTGCTTGTCCTGTGTGTGGAGCTACCACCTTCTGAAAGGAATCTGCATCCCAGAATGTATCGTAGGGGAATACAGAGAGGGAAAG atctacttcataatgtactctagttctctttgccttctctttttca gGGAAGGAGGCATGGAGTTGCTTGCCGTGTGTGTGGAGCTACCACCTTCTGGAAGGAATCTGCATTCCAGAATGTATTGTAGGGGAATACAGAGAGGGAAAGgtaagtagacttgggggtggtaggagtatttcaccctcactgggctccct Alignment from Spaln_nt2Genome GAAAGGAGGCGTGGAGTTGCTTGTCCTGTGTGTGGAGCTACCACCTTCTGAAAGGAATCTGCATCCCAGAATGTATCGTAGGGGAATACAGAGAGGGAAAG aaaatctacttcataatgtactctagttctctttgccttctctttttcagGGAAGGAGGCATGGAGTTGCTTGCCGTGTGTGTGGAGCTACCACCTTCTGGAAGGAATCTGCATTCCAGAATGTATTGTAGGGGAATACAGAGAGGGAAAGgtaagtagacttgggggtggtaggagtatttcaccctcactgggctccct Alignment from Pairagon GCCACCCCACTTGTGACAAGTGCAGCGGAAAGGAGGCGTGGAGTTGCTTGTCCTGTGTGTGGAGCTACCACCTTCTGAAAGGAATCTGCATCCCAGAATGTATCGTAGGGGAATACAGAGAGGGAAAG aaaatctacttcataatgtactctagttctctttgccttctctttttcag---------------------------GGAAGGAGGCATGGAGTTGCTTGCCGTGTGTGTGGAGCTACCACCTTCTGGAAGGAATCTGCATTCCAGAATGTATTGTAGGGGAATACAGAGAGGGAAAGgtaagtagacttgggggtggtaggagtatttcaccctcactgggctccct Alignment from Exonerate_protein2genome GTGACAAGTGCAGCGGAAAGGAGGCGTGGAGTTGCTTGTCCTGTGTGTGGAGCTACCACCTTCTGAAAGGAATCTGCATCCCAGAATGTATCGTAGGGGAATACAGAGAGGGAAAG aaaatctacttcataatgtactctagttctctttgCCTTCTCTTTTTCAGGGAAGGAGGCATGGAGTTGCTTGCCGTGTGTGTGGAGCTACCACCTTCTGGAAGGAATCTGCATTCCAGAATGTATTGTAGGGGAATACAGAGAGGGAAAGgtaagtagacttgggggtggtaggagtatttcaccctcactgggctccct Alignment from Exonerate_coding2genome GTGACAAGTGCAGCGGAAAGGAGGCGTGGAGTTGCTTGTCCTGTGTGTGGAGCTACCACCTTCTGAAAGGAATCTGCATCCCAGAATGTATCGTAGGGGAATACAGAGAGGGAAAG aaaatctacttcataatgtactctagttctctttgCCTTCTCTTTTTCAGGGAAGGAGGCATGGAGTTGCTTGCCGTGTGTGTGGAGCTACCACCTTCTGGAAGGAATCTGCATTCCAGAATGTATTGTAGGGGAATACAGAGAGGGAAAGgtaagtagacttgggggtggtaggagtatttcaccctcactgggctccct Alignment from GeneWise --------------------AGCGGAAAGGAGGCGTGGAGTTGCTTGTCCTGTGTGTGGAGCTACCACCTTCTGAAAGGAATCTGCATCCCAGAATGTATCGTAGGGGAATACAGAGAGGGAAAGGGA aaaatctacttcataatgtactctagTTCTCTTTGCCTTCTCTTTTTCAGGGAAGGAGGCATGGAGTTGCTTGCCGTGTGTGTGGAGCTACCACCTTCTGGAAGGAATCTGCATTCCAGAATGTATTGTAGGGGAATACAGAGAGGGA---AAGgtaagtagacttgggggtggtaggagtatttcaccctcactgggctccct #### Pcsk5_ID4234_33 --> 2 - 1 Original Alignment atTGCCCCGAGTCCTGCCTGATCTGCTCATCAGCTTGGACCTGCCTGGCCTGTCGGGAAGGCTTCACAGTAGTGCATGATGTCTGCACGGCACCCAAGGAGTGTGCAGCCGTCGAGTACTGGGATGAGGGCTCCCACAGGTGCCAGCCGTGTCACAAGAAATGCTCCCGCTGCTCAGGGCCTTCTGAGGACCAGTGCTATACCTGTCCCAGAGAGACTTTTCTTCTCa cagtcccatgcctattgcacaatctgattgtttttgatgtacattgttagacTGCCCAGGATCCGGCCTAATTTGTTCATCAACTTGGACTTGTCTCTCCTGTCGAGAAGGGTTCATAGTGGTGCATGATGTCTGCACAGCACTTAGAGAATGTGCAGCTGTTGAGTATTGGGATGAGGGTTCTCAAAGATGCCAACCATGCCATAAGAAGTGTTCTCAGTGCTCAGGACCTTCAGAGGACCAGTGCTATACTTGTCCCAGGCAGTCTTTTCTTCTTagtaagatgcaaagctgtgtcatgtaattgtcaaccataaacttcatgaga Alignment from CESAR atTGCCCCGAGTCCTGCCTGATCTGCTCATCAGCTTGGACCTGCCTGGCCTGTCGGGAAGGCTTCACAGTAGTGCATGATGTCTGCACGGCACCCAAGGAGTGTGCAGCCGTCGAGTACTGGGATGAGGGCTCCCACAGGTGCCAGCCGTGTCACAAGAAATGCTCCCGCTGCTCAGGGCCTTCTGAGGACCAGTGCTATACCTGTCCCAGAGAGACTTTTCTTCTCa cagtcccatgcctattgcacaatctgattgtttttgatgtacattgttagacTGCCCAGGATCCGGCCTAATTTGTTCATCAACTTGGACTTGTCTCTCCTGTCGAGAAGGGTTCATAGTGGTGCATGATGTCTGCACAGCACTTAGAGAATGTGCAGCTGTTGAGTATTGGGATGAGGGTTCTCAAAGATGCCAACCATGCCATAAGAAGTGTTCTCAGTGCTCAGGACCTTCAGAGGACCAGTGCTATACTTGTCCCAGGCAGTCTTTTCTTCTTagtaagatgcaaagctgtgtcatgtaattgtcaaccataaacttcatgaga Alignment from Spaln_aa2Genome ATTGCCCCGAGTCCTGCCTGATCTGCTCATCAGCTTGGACCTGCCTGGCCTGTCGGGAAGGCTTCACAGTAGTGCATGATGTCTGCACGGCACCCAAGGAGTGTGCAGCCGTCGAGTACTGGGATGAGGGCTCCCACAGGTGCCAGCCGTGTCACAAGAAATGCTCCCGCTGCTCAGGGCCTTCTGAGGACCAGTGCTATACCTGTCCCAGAGAGACTTTTCTTCTCA cagtcccatgcctattgcacaatctgattgtttttgatgtacattgttagACTGCCCAGGATCCGGCCTAATTTGTTCATCAACTTGGACTTGTCTCTCCTGTCGAGAAGGGTTCATAGTGGTGCATGATGTCTGCACAGCACTTAGAGAATGTGCAGCTGTTGAGTATTGGGATGAGGGTTCTCAAAGATGCCAACCATGCCATAAGAAGTGTTCTCAGTGCTCAGGACCTTCAGAGGACCAGTGCTATACTTGTCCCAGGCAGTCTTTTCTTCTTAgtaagatgcaaagctgtgtcatgtaattgtcaaccataaacttcatgaga Alignment from Spaln_nt2Genome ATTGCCCCGAGTCCTGCCTGATCTGCTCATCAGCTTGGACCTGCCTGGCCTGTCGGGAAGGCTTCACAGTAGTGCATGATGTCTGCACGGCACCCAAGGAGTGTGCAGCCGTCGAGTACTGGGATGAGGGCTCCCACAGGTGCCAGCCGTGTCACAAGAAATGCTCCCGCTGCTCAGGGCCTTCTGAGGACCAGTGCTATACCTGTCCCAGAGAGACTTTTCTTCTCA cagtcccatgcctattgcacaatctgattgtttttgatgtacattgttagACTGCCCAGGATCCGGCCTAATTTGTTCATCAACTTGGACTTGTCTCTCCTGTCGAGAAGGGTTCATAGTGGTGCATGATGTCTGCACAGCACTTAGAGAATGTGCAGCTGTTGAGTATTGGGATGAGGGTTCTCAAAGATGCCAACCATGCCATAAGAAGTGTTCTCAGTGCTCAGGACCTTCAGAGGACCAGTGCTATACTTGTCCCAGGCAGTCTTTTCTTCTTAgtaagatgcaaagctgtgtcatgtaattgtcaaccataaacttcatgaga Alignment from Pairagon ATTGCCCCGAGTCCTGCCTGATCTGCTCATCAGCTTGGACCTGCCTGGCCTGTCGGGAAGGCTTCACAGTAGTGCATGATGTCTGCACGGCACCCAAGGAGTGTGCAGCCGTCGAGTACTGGGATGAGGGCTCCCACAGGTGCCAGCCGTGTCACAAGAAATGCTCCCGCTGCTCAGGGCCTTCTGAGGACCAGTGCTATACCTGTCCCAGAGAGACTTTTCTTCTCA cagtcccatgcctattgcacaatctgattgtttttgatgtacattgttagACTGCCCAGGATCCGGCCTAATTTGTTCATCAACTTGGACTTGTCTCTCCTGTCGAGAAGGGTTCATAGTGGTGCATGATGTCTGCACAGCACTTAGAGAATGTGCAGCTGTTGAGTATTGGGATGAGGGTTCTCAAAGATGCCAACCATGCCATAAGAAGTGTTCTCAGTGCTCAGGACCTTCAGAGGACCAGTGCTATACTTGTCCCAGGCAGTCTTTTCTTCTTAgtaagatgcaaagctgtgtcatgtaattgtcaaccataaacttcatgaga Alignment from Exonerate_protein2genome ATTGCCCCGAGTCCTGCCTGATCTGCTCATCAGCTTGGACCTGCCTGGCCTGTCGGGAAGGCTTCACAGTAGTGCATGATGTCTGCACGGCACCCAAGGAGTGTGCAGCCGTCGAGTACTGGGATGAGGGCTCCCACAGGTGCCAGCCGTGTCACAAGAAATGCTCCCGCTGCTCAGGGCCTTCTGAGGACCAGTGCTATACCTGTCCCAGAGAGACTTTTCTTCTCA cagtcccatgcctattgcacaatctgattgtttttgatgtacattgttagACTGCCCAGGATCCGGCCTAATTTGTTCATCAACTTGGACTTGTCTCTCCTGTCGAGAAGGGTTCATAGTGGTGCATGATGTCTGCACAGCACTTAGAGAATGTGCAGCTGTTGAGTATTGGGATGAGGGTTCTCAAAGATGCCAACCATGCCATAAGAAGTGTTCTCAGTGCTCAGGACCTTCAGAGGACCAGTGCTATACTTGTCCCAGGCAGTCTTTTCTTCTTAgtaagatgcaaagctgtgtcatgtaattgtcaaccataaacttcatgaga Alignment from Exonerate_coding2genome ATTGCCCCGAGTCCTGCCTGATCTGCTCATCAGCTTGGACCTGCCTGGCCTGTCGGGAAGGCTTCACAGTAGTGCATGATGTCTGCACGGCACCCAAGGAGTGTGCAGCCGTCGAGTACTGGGATGAGGGCTCCCACAGGTGCCAGCCGTGTCACAAGAAATGCTCCCGCTGCTCAGGGCCTTCTGAGGACCAGTGCTATACCTGTCCCAGAGAGACTTTTCTTCTCA cagtcccatgcctattgcacaatctgattgtttttgatgtacattgttagACTGCCCAGGATCCGGCCTAATTTGTTCATCAACTTGGACTTGTCTCTCCTGTCGAGAAGGGTTCATAGTGGTGCATGATGTCTGCACAGCACTTAGAGAATGTGCAGCTGTTGAGTATTGGGATGAGGGTTCTCAAAGATGCCAACCATGCCATAAGAAGTGTTCTCAGTGCTCAGGACCTTCAGAGGACCAGTGCTATACTTGTCCCAGGCAGTCTTTTCTTCTTAgtaagatgcaaagctgtgtcatgtaattgtcaaccataaacttcatgaga Alignment from GeneWise ATTGCCCCGAGTCCTGCCTGATCTGCTCATCAGCTTGGACCTGCCTGGCCTGTCGGGAAGGCTTCACAGTAGTGCATGATGTCTGCACGGCACCCAAGGAGTGTGCAGCCGTCGAGTACTGGGATGAGGGCTCCCACAGGTGCCAGCCGTGTCACAAGAAATGCTCCCGCTGCTCAGGGCCTTCTGAGGACCAGTGCTATACCTGTCCCAGAGAGACTTTTCTTCTCA cagtcccatgcctattgcacaatctgattgtttttgatgtacattgttagACTGCCCAGGATCCGGCCTAATTTGTTCATCAACTTGGACTTGTCTCTCCTGTCGAGAAGGGTTCATAGTGGTGCATGATGTCTGCACAGCACTTAGAGAATGTGCAGCTGTTGAGTATTGGGATGAGGGTTCTCAAAGATGCCAACCATGCCATAAGAAGTGTTCTCAGTGCTCAGGACCTTCAGAGGACCAGTGCTATACTTGTCCCAGGCAGTCTTTTCTTCTTAgtaagatgcaaagctgtgtcatgtaattgtcaaccataaacttcatgaga #### Pcsk5_ID4238_29 --> 2 - 1 Original Alignment atGCAACGAGCCAGAATCAACCTTGTCACTCTTCTTGTAAAACCTGCAATGGATCTCTCTGCGCTTCATGTCCCACAg aacaacatattccagggtagagtcctgtcttcatcctctcattcctctagacGCAATGAGCCAGAATCAGCCTTGTCACTCCTCTTGTAAAGCTTGCAATGGATCACTCTGTGCTTCATGTTCCGTAggtaaacttgaagggggacatgctagatgagatgcatacacttattgtcca Alignment from CESAR atGCAACGAGCCAGAATCAACCTTGTCACTCTTCTTGTAAAACCTGCAATGGATCTCTCTGCGCTTCATGTCCCACAg aacaacatattccagggtagagtcctgtcttcatcctctcattcctctagacGCAATGAGCCAGAATCAGCCTTGTCACTCCTCTTGTAAAGCTTGCAATGGATCACTCTGTGCTTCATGTTCCGTAggtaaacttgaagggggacatgctagatgagatgcatacacttattgtcca Alignment from Spaln_aa2Genome ATGCAACGAGCCAGAATCAACCTTGTCACTCTTCTTGTAAAACCTGCAATGGATCTCTCTGCGCTTCATGTCCCACAG aacaacatattccagggtagagtcctgtcttcatcctctcattcctctagACGCAATGAGCCAGAATCAGCCTTGTCACTCCTCTTGTAAAGCTTGCAATGGATCACTCTGTGCTTCATGTTCCGTAGgtaaacttgaagggggacatgctagatgagatgcatacacttattgtcca Alignment from Spaln_nt2Genome ATGCAACGAGCCAGAATCAACCTTGTCACTCTTCTTGTAAAACCTGCAATGGATCTCTCTGCGCTTCATGTCCC aacaacatattccagggtagagtcctgtcttcatcctctcattcctctagACGCAATGAGCCAGAATCAGCCTTGTCACTCCTCTTGTAAAGCTTGCAATGGATCACTCTGTGCTTCATGTTCCgtaggtaaacttgaagggggacatgctagatgagatgcatacacttattgtcca Alignment from Pairagon ATGCAACGAGCCAGAATCAACCTTGTCACTCTTCTTGTAAAACCTGCAATGGATCTCTCTGCGCTTCATGTCCCACAG aacaacatattccagggtagagtcctgtcttcatcctctcattcctctagACGCAATGAGCCAGAATCAGCCTTGTCACTCCTCTTGTAAAGCTTGCAATGGATCACTCTGTGCTTCATGTTCCGTAGgtaaacttgaagggggacatgctagatgagatgcatacacttattgtcca Alignment from Exonerate_protein2genome ATGCAACGAGCCAGAATCAACCTTGTCACTCTTCTTGTAAAACCTGCAATGGATCTCTCTGCGCTTCATGTCCCACAG aacaacatattccagggtagagtcctgtcttcatcctctcattcctctagACGCAATGAGCCAGAATCAGCCTTGTCACTCCTCTTGTAAAGCTTGCAATGGATCACTCTGTGCTTCATGTTCCGTAGgtaaacttgaagggggacatgctagatgagatgcatacacttattgtcca Alignment from Exonerate_coding2genome ATGCAACGAGCCAGAATCAACCTTGTCACTCTTCTTGTAAAACCTGCAATGGATCTCTCTGCGCTTCATGTCCCACAG aacaacatattccagggtagagtcctgtcttcatcctctcattcctctagACGCAATGAGCCAGAATCAGCCTTGTCACTCCTCTTGTAAAGCTTGCAATGGATCACTCTGTGCTTCATGTTCCGTAGgtaaacttgaagggggacatgctagatgagatgcatacacttattgtcca Alignment from GeneWise ATGCAACGAGCCAGAATCAACCTTGTCACTCTTCTTGTAAAACCTGCAATGGATCTCTCTGCGCTTCATGTCCCACAG aacaacatattccagggtagagtcctgtcttcatcctctcattcctctagACGCAATGAGCCAGAATCAGCCTTGTCACTCCTCTTGTAAAGCTTGCAATGGATCACTCTGTGCTTCATGTTCCGTAGgtaaacttgaagggggacatgctagatgagatgcatacacttattgtcca #### Pcsk5_ID4242_27 --> 2 - 1 Original Alignment gtGGCAGCTGTGTGCAGGATTGTGGCCCTGGCTTCCATGGAGACCAAGAGTTGGGAGAATGCAAGCCCTGCCACCGAGCCTGTGAGAATTGCACTGGCTCGGGCTACAACCAATGCAGCAGCTGTCAAGAAGGGTTGCAGCTATGGCATGGGACGTGTCTCTGGTCCACCTGGCCTCAGGTGGAAGGCAAGGACTGGAATg aactaaactcaatctccagactatgtgcctgctcttgctcttcccctcaggcAGCAGTTGTGTGCAGGATTGTGGACCCGGCTTCCATGGAGAGCAAGAATTGGGAGAATGCAAGCCCTGCCACCAGGCATGTGAGAACTGCACCAGTTCAGGATACAACCAATGCAGCAGTTGTCAAGAAGGATTGCAGCTATGGCATGGGATGTGCCTTTGGTCTACCTGGCCTCAGATTGAAGGCAAGGACTGGAATggtaggtttccaagtgaagggaggttaatgtaatttctgtcaaatgcttct Alignment from CESAR gtGGCAGCTGTGTGCAGGATTGTGGCCCTGGCTTCCATGGAGACCAAGAGTTGGGAGAATGCAAGCCCTGCCACCGAGCCTGTGAGAATTGCACTGGCTCGGGCTACAACCAATGCAGCAGCTGTCAAGAAGGGTTGCAGCTATGGCATGGGACGTGTCTCTGGTCCACCTGGCCTCAGGTGGAAGGCAAGGACTGGAATg aactaaactcaatctccagactatgtgcctgctcttgctcttcccctcaggcAGCAGTTGTGTGCAGGATTGTGGACCCGGCTTCCATGGAGAGCAAGAATTGGGAGAATGCAAGCCCTGCCACCAGGCATGTGAGAACTGCACCAGTTCAGGATACAACCAATGCAGCAGTTGTCAAGAAGGATTGCAGCTATGGCATGGGATGTGCCTTTGGTCTACCTGGCCTCAGATTGAAGGCAAGGACTGGAATggtaggtttccaagtgaagggaggttaatgtaatttctgtcaaatgcttct Alignment from Spaln_aa2Genome GTGGCAGCTGTGTGCAGGATTGTGGCCCTGGCTTCCATGGAGACCAAGAGTTGGGAGAATGCAAGCCCTGCCACCGAGCCTGTGAGAATTGCACTGGCTCGGGCTACAACCAATGCAGCAGCTGTCAAGAAGGGTTGCAGCTATGGCATGGGACGTGTCTCTGGTCCACCTGGCCTCAGGTGGAAGGCAAGGACTGGAATG aactaaactcaatctccagactatgtgcctgctcttgctcttcccctcagGCAGCAGTTGTGTGCAGGATTGTGGACCCGGCTTCCATGGAGAGCAAGAATTGGGAGAATGCAAGCCCTGCCACCAGGCATGTGAGAACTGCACCAGTTCAGGATACAACCAATGCAGCAGTTGTCAAGAAGGATTGCAGCTATGGCATGGGATGTGCCTTTGGTCTACCTGGCCTCAGATTGAAGGCAAGGACTGGAATGgtaggtttccaagtgaagggaggttaatgtaatttctgtcaaatgcttct Alignment from Spaln_nt2Genome GTGGCAGCTGTGTGCAGGATTGTGGCCCTGGCTTCCATGGAGACCAAGAGTTGGGAGAATGCAAGCCCTGCCACCGAGCCTGTGAGAATTGCACTGGCTCGGGCTACAACCAATGCAGCAGCTGTCAAGAAGGGTTGCAGCTATGGCATGGGACGTGTCTCTGGTCCACCTGGCCTCAGGTGGAAGGCAAGGACTGGAATG aactaaactcaatctccagactatgtgcctgctcttgctcttcccctcagGCAGCAGTTGTGTGCAGGATTGTGGACCCGGCTTCCATGGAGAGCAAGAATTGGGAGAATGCAAGCCCTGCCACCAGGCATGTGAGAACTGCACCAGTTCAGGATACAACCAATGCAGCAGTTGTCAAGAAGGATTGCAGCTATGGCATGGGATGTGCCTTTGGTCTACCTGGCCTCAGATTGAAGGCAAGGACTGGAATGgtaggtttccaagtgaagggaggttaatgtaatttctgtcaaatgcttct Alignment from Pairagon GTGGCAGCTGTGTGCAGGATTGTGGCCCTGGCTTCCATGGAGACCAAGAGTTGGGAGAATGCAAGCCCTGCCACCGAGCCTGTGAGAATTGCACTGGCTCGGGCTACAACCAATGCAGCAGCTGTCAAGAAGGGTTGCAGCTATGGCATGGGACGTGTCTCTGGTCCACCTGGCCTCAGGTGGAAGGCAAGGACTGGAATG aactaaactcaatctccagactatgtgcctgctcttgctcttcccctcagGCAGCAGTTGTGTGCAGGATTGTGGACCCGGCTTCCATGGAGAGCAAGAATTGGGAGAATGCAAGCCCTGCCACCAGGCATGTGAGAACTGCACCAGTTCAGGATACAACCAATGCAGCAGTTGTCAAGAAGGATTGCAGCTATGGCATGGGATGTGCCTTTGGTCTACCTGGCCTCAGATTGAAGGCAAGGACTGGAATGgtaggtttccaagtgaagggaggttaatgtaatttctgtcaaatgcttct Alignment from Exonerate_protein2genome GTGGCAGCTGTGTGCAGGATTGTGGCCCTGGCTTCCATGGAGACCAAGAGTTGGGAGAATGCAAGCCCTGCCACCGAGCCTGTGAGAATTGCACTGGCTCGGGCTACAACCAATGCAGCAGCTGTCAAGAAGGGTTGCAGCTATGGCATGGGACGTGTCTCTGGTCCACCTGGCCTCAGGTGGAAGGCAAGGACTGGAATG aactaaactcaatctccagactatgtgcctgctcttgctcttcccctcagGCAGCAGTTGTGTGCAGGATTGTGGACCCGGCTTCCATGGAGAGCAAGAATTGGGAGAATGCAAGCCCTGCCACCAGGCATGTGAGAACTGCACCAGTTCAGGATACAACCAATGCAGCAGTTGTCAAGAAGGATTGCAGCTATGGCATGGGATGTGCCTTTGGTCTACCTGGCCTCAGATTGAAGGCAAGGACTGGAATGgtaggtttccaagtgaagggaggttaatgtaatttctgtcaaatgcttct Alignment from Exonerate_coding2genome GTGGCAGCTGTGTGCAGGATTGTGGCCCTGGCTTCCATGGAGACCAAGAGTTGGGAGAATGCAAGCCCTGCCACCGAGCCTGTGAGAATTGCACTGGCTCGGGCTACAACCAATGCAGCAGCTGTCAAGAAGGGTTGCAGCTATGGCATGGGACGTGTCTCTGGTCCACCTGGCCTCAGGTGGAAGGCAAGGACTGGAATG aactaaactcaatctccagactatgtgcctgctcttgctcttcccctcagGCAGCAGTTGTGTGCAGGATTGTGGACCCGGCTTCCATGGAGAGCAAGAATTGGGAGAATGCAAGCCCTGCCACCAGGCATGTGAGAACTGCACCAGTTCAGGATACAACCAATGCAGCAGTTGTCAAGAAGGATTGCAGCTATGGCATGGGATGTGCCTTTGGTCTACCTGGCCTCAGATTGAAGGCAAGGACTGGAATGgtaggtttccaagtgaagggaggttaatgtaatttctgtcaaatgcttct Alignment from GeneWise CAGCTGTGTGCAGGATTGTGGCCCTGGCTTCCATGGAGACCAAGAGTTGGGAGAATGCAAGCCCTGCCACCGAGCCTGTGAGAATTGCACTGGCTCGGGCTACAACCAATGCAGCAGCTGTCAAGAAGGGTTGCAGCTATGGCATGGGACGTGTCTCTGGTCCACCTGGCCTCAGGTGGAAGGCAAGGACTGGAATG aactaaactcaatctccagactatgtgcctgctcttgctcttcccctcaggcagCAGTTGTGTGCAGGATTGTGGACCCGGCTTCCATGGAGAGCAAGAATTGGGAGAATGCAAGCCCTGCCACCAGGCATGTGAGAACTGCACCAGTTCAGGATACAACCAATGCAGCAGTTGTCAAGAAGGATTGCAGCTATGGCATGGGATGTGCCTTTGGTCTACCTGGCCTCAGATTGAAGGCAAGGACTGGAATGgtaggtttccaagtgaagggaggttaatgtaatttctgtcaaatgcttct #### Pcsk5_ID4263_20 --> 1 - 1 Original Alignment aTGTGATAACAGCTGTTTGACATGCAATGGGCCAGGATTCAAGAACTGTTCCAGCTGCCCCAGTGGATATCTTTTAGACTTAGGAACGTGTCAGATGGGAGCCATCTGCAAGGATg tagcttgacaccctgacagctcaacagtgggatcttcctgtctctcacagaTGTTACAATAGCTGCCTTACGTGCAATGGGCCAGGATTTAAGAATTGCTCTAGTTGCCCCAGTGAATACCTTTTAGACTTAGGTACATGTCAGATGGGAGCTGTCTGCAGGGAGggtaagggcagtgttatcagttagggttagcaatggcaataaaagtcaaca Alignment from CESAR aTGTGATAACAGCTGTTTGACATGCAATGGGCCAGGATTCAAGAACTGTTCCAGCTGCCCCAGTGGATATCTTTTAGACTTAGGAACGTGTCAGATGGGAGCCATCTGCAAGGATg tagcttgacaccctgacagctcaacagtgggatcttcctgtctctcacagaTGTTACAATAGCTGCCTTACGTGCAATGGGCCAGGATTTAAGAATTGCTCTAGTTGCCCCAGTGAATACCTTTTAGACTTAGGTACATGTCAGATGGGAGCTGTCTGCAGGGAGggtaagggcagtgttatcagttagggttagcaatggcaataaaagtcaaca Alignment from Spaln_aa2Genome ATGTGATAACAGCTGTTTGACATGCAATGGGCCAGGATTCAAGAACTGTTCCAGCTGCCCCAGTGGATATCTTTTAGACTTAGGAACGTGTCAGATGGGAGCCATCTGCAAGGATG tagcttgacaccctgacagctcaacagtgggatcttcctgtctctcacagATGTTACAATAGCTGCCTTACGTGCAATGGGCCAGGATTTAAGAATTGCTCTAGTTGCCCCAGTGAATACCTTTTAGACTTAGGTACATGTCAGATGGGAGCTGTCTGCAGGGAGGgtaagggcagtgttatcagttagggttagcaatggcaataaaagtcaaca Alignment from Spaln_nt2Genome ATGTGATAACAGCTGTTTGACATGCAATGGGCCAGGATTCAAGAACTGTTCCAGCTGCCCCAGTGGATATCTTTTAGACTTAGGAACGTGTCAGATGGGAGCCATCTGCAAGGATG tagcttgacaccctgacagctcaacagtgggatcttcctgtctctcacagATGTTACAATAGCTGCCTTACGTGCAATGGGCCAGGATTTAAGAATTGCTCTAGTTGCCCCAGTGAATACCTTTTAGACTTAGGTACATGTCAGATGGGAGCTGTCTGCAGGGAGGgtaagggcagtgttatcagttagggttagcaatggcaataaaagtcaaca Alignment from Pairagon ATGTGATAACAGCTGTTTGACATGCAATGGGCCAGGATTCAAGAACTGTTCCAGCTGCCCCAGTGGATATCTTTTAGACTTAGGAACGTGTCAGATGGGAGCCATCTGCAAGGATG tagcttgacaccctgacagctcaacagtgggatcttcctgtctctcacagATGTTACAATAGCTGCCTTACGTGCAATGGGCCAGGATTTAAGAATTGCTCTAGTTGCCCCAGTGAATACCTTTTAGACTTAGGTACATGTCAGATGGGAGCTGTCTGCAGGGAGGgtaagggcagtgttatcagttagggttagcaatggcaataaaagtcaaca Alignment from Exonerate_protein2genome ATGTGATAACAGCTGTTTGACATGCAATGGGCCAGGATTCAAGAACTGTTCCAGCTGCCCCAGTGGATATCTTTTAGACTTAGGAACGTGTCAGATGGGAGCCATCTGCAAGGATG tagcttgacaccctgacagctcaacagtgggatcttcctgtctctcacagATGTTACAATAGCTGCCTTACGTGCAATGGGCCAGGATTTAAGAATTGCTCTAGTTGCCCCAGTGAATACCTTTTAGACTTAGGTACATGTCAGATGGGAGCTGTCTGCAGGGAGGgtaagggcagtgttatcagttagggttagcaatggcaataaaagtcaaca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATGTGATAACAGCTGTTTGACATGCAATGGGCCAGGATTCAAGAACTGTTCCAGCTGCCCCAGTGGATATCTTTTAGACTTAGGAACGTGTCAGATGGGAGCCATCTGCAAGGATG tagcttgacaccctgacagctcaacagtgggatcttcctgtctctcacagATGTTACAATAGCTGCCTTACGTGCAATGGGCCAGGATTTAAGAATTGCTCTAGTTGCCCCAGTGAATACCTTTTAGACTTAGGTACATGTCAGATGGGAGCTGTCTGCAGGGAGGgtaagggcagtgttatcagttagggttagcaatggcaataaaagtcaaca #### Pcsk5_ID4268_16 --> 1 - 1 Original Alignment aATCTGTGTCTCCAGCTGCCCTCCTGGCCACTACCATGCTGACAAGAAGAGATGCCGGAAGTGTGCCCCAAACTGCGAGTCCTGCTTTGGCAGCCATGGTAATCAGTGCCTCTCCTGTAAATATGGCTACTTCCTGAATGAAGAAACTAGCAGCTGTGTTACTCAGTGCCCTGATGGATCATACGAGGATATCa tgtagatcaagaaacacctccctctgctgttggtgttgatccttttccaggATTTGTGTCTCCAGCTGTCCTCCTGGCCACTACCAGGCTGATAGAAAAGGGTGCCGAAAGTGT------AATTGTGAGTCCTGCTTTGGTAGCCATGGTAATCAGTGTCTTTCCTGTAAATATGGCTACTTCCTGATTGAAGAGTCCAGCAGTTGTGTTACTCAGTGCCCTGATGGATCATATGATGATTTAagtaggacatactgaaaggttctatctgtgtatggcagggctgctaccatt Alignment from CESAR aATCTGTGTCTCCAGCTGCCCTCCTGGCCACTACCATGCTGACAAGAAGAGATGCCGGAAGTGTGCCCCAAACTGCGAGTCCTGCTTTGGCAGCCATGGTAATCAGTGCCTCTCCTGTAAATATGGCTACTTCCTGAATGAAGAAACTAGCAGCTGTGTTACTCAGTGCCCTGATGGATCATACGAGGATATCa tgtagatcaagaaacacctccctctgctgttggtgttgatccttttccaggATTTGTGTCTCCAGCTGTCCTCCTGGCCACTACCAGGCTGATAGAAAAGGGTGCCGAAAGTGT------AATTGTGAGTCCTGCTTTGGTAGCCATGGTAATCAGTGTCTTTCCTGTAAATATGGCTACTTCCTGATTGAAGAGTCCAGCAGTTGTGTTACTCAGTGCCCTGATGGATCATATGATGATTTAagtaggacatactgaaaggttctatctgtgtatggcagggctgctaccatt Alignment from Spaln_aa2Genome AATCTGTGTCTCCAGCTGCCCTCCTGGCCACTACCATGCTGACAAGAAGAGATGCCGGAAGTGTGCCCCAAACTGCGAGTCCTGCTTTGGCAGCCATGGTAATCAGTGCCTCTCCTGTAAATATGGCTACTTCCTGAATGAAGAAACTAGCAGCTGTGTTACTCAGTGCCCTGATGGATCATACGAGGATATCA tgtagatcaagaaacacctccctctgctgttggtgttgatccttttccagGATTTGTGTCTCCAGCTGTCCTCCTGGCCACTACCAGGCTGATAGAAAAGGGTGCCGAAAGTGT------AATTGTGAGTCCTGCTTTGGTAGCCATGGTAATCAGTGTCTTTCCTGTAAATATGGCTACTTCCTGATTGAAGAGTCCAGCAGTTGTGTTACTCAGTGCCCTGATGGATCATATGATGATTTAAgtaggacatactgaaaggttctatctgtgtatggcagggctgctaccatt Alignment from Spaln_nt2Genome AATCTGTGTCTCCAGCTGCCCTCCTGGCCACTACCATGCTGACAAGAAGAGATGCCGGAAGTGTGCCCCAAACTGCGAGTCCTGCTTTGGCAGCCATGGTAATCAGTGCCTCTCCTGTAAATATGGCTACTTCCTGAATGAAGAAACTAGCAGCTGTGTTACTCAGTGCCCTGATGGATCATACGAGGATATCA tgtagatcaagaaacacctccctctgctgttggtgttgatccttttccagGATTTGTGTCTCCAGCTGTCCTCCTGGCCACTACCAGGCTGATAGAAAAGGGTGCCGAAAGTGT------AATTGTGAGTCCTGCTTTGGTAGCCATGGTAATCAGTGTCTTTCCTGTAAATATGGCTACTTCCTGATTGAAGAGTCCAGCAGTTGTGTTACTCAGTGCCCTGATGGATCATATGATGATTTAAgtaggacatactgaaaggttctatctgtgtatggcagggctgctaccatt Alignment from Pairagon AATCTGTGTCTCCAGCTGCCCTCCTGGCCACTACCATGCTGACAAGAAGAGATGCCGGAAGTGTGCCCCAAACTGCGAGTCCTGCTTTGGCAGCCATGGTAATCAGTGCCTCTCCTGTAAATATGGCTACTTCCTGAATGAAGAAACTAGCAGCTGTGTTACTCAGTGCCCTGATGGATCATACGAGGATATCA tgtagatcaagaaacacctccctctgctgttggtgttgatccttttccagGATTTGTGTCTCCAGCTGTCCTCCTGGCCACTACCAGGCTGATAGAAAAGGGTGCCGAAAGTGT------AATTGTGAGTCCTGCTTTGGTAGCCATGGTAATCAGTGTCTTTCCTGTAAATATGGCTACTTCCTGATTGAAGAGTCCAGCAGTTGTGTTACTCAGTGCCCTGATGGATCATATGATGATTTAAgtaggacatactgaaaggttctatctgtgtatggcagggctgctaccatt Alignment from Exonerate_protein2genome AATCTGTGTCTCCAGCTGCCCTCCTGGCCACTACCATGCTGACAAGAAGAGATGCCGGAAGTGTGCCCCAAACTGCGAGTCCTGCTTTGGCAGCCATGGTAATCAGTGCCTCTCCTGTAAATATGGCTACTTCCTGAATGAAGAAACTAGCAGCTGTGTTACTCAGTGCCCTGATGGATCATACGAGGATATCA tgtagatcaagaaacacctccctctgctgttggtgttgatccttttccagGATTTGTGTCTCCAGCTGTCCTCCTGGCCACTACCAGGCTGATAGAAAAGGGTGCCGAAAGTGT------AATTGTGAGTCCTGCTTTGGTAGCCATGGTAATCAGTGTCTTTCCTGTAAATATGGCTACTTCCTGATTGAAGAGTCCAGCAGTTGTGTTACTCAGTGCCCTGATGGATCATATGATGATTTAAgtaggacatactgaaaggttctatctgtgtatggcagggctgctaccatt Alignment from Exonerate_coding2genome AATCTGTGTCTCCAGCTGCCCTCCTGGCCACTACCATGCTGACAAGAAGAGATGCCGGAAGTGTGCCCCAAACTGCGAGTCCTGCTTTGGCAGCCATGGTAATCAGTGCCTCTCCTGTAAATATGGCTACTTCCTGAATGAAGAAACTAGCAGCTGTGTTACTCAGTGCCCTGATGGATCATACGAGGATATCA tgtagatcaagaaacacctccctctgctgttggtgttgatccttttccagGATTTGTGTCTCCAGCTGTCCTCCTGGCCACTACCAGGCTGATAGAAAAGGGTGCCGAAAGTGT------AATTGTGAGTCCTGCTTTGGTAGCCATGGTAATCAGTGTCTTTCCTGTAAATATGGCTACTTCCTGATTGAAGAGTCCAGCAGTTGTGTTACTCAGTGCCCTGATGGATCATATGATGATTTAAgtaggacatactgaaaggttctatctgtgtatggcagggctgctaccatt Alignment from GeneWise AATCTGTGTCTCCAGCTGCCCTCCTGGCCACTACCATGCTGACAAGAAGAGATGCCGGAAGTGTGCCCCAAACTGCGAGTCCTGCTTTGGCAGCCATGGTAATCAGTGCCTCTCCTGTAAATATGGCTACTTCCTGAATGAAGAAACTAGCAGCTGTGTTACTCAGTGCCCTGATGGATCATACGAGGATATCA tgtagatcaagaaacacctccctctgctgttggtgttgatccttttccagGATTTGTGTCTCCAGCTGTCCTCCTGGCCACTACCAGGCTGATAGAAAAGGGTGCCGAAAGTGT------AATTGTGAGTCCTGCTTTGGTAGCCATGGTAATCAGTGTCTTTCCTGTAAATATGGCTACTTCCTGATTGAAGAGTCCAGCAGTTGTGTTACTCAGTGCCCTGATGGATCATATGATGATTTAAgtaggacatactgaaaggttctatctgtgtatggcagggctgctaccatt #### Pcsk5_ID4269_15 --> 2 - 2 Original Alignment gtCCCTGTGACCCTGAATGCAGTGAGGTTGGATGTGACGGGCCAGGACCAGATCACTGCAGTGACTGCTTACACTACTACTACAAGCTGAAAAATAACACCag cttttggtcctccctgggaccccttcttgcttctcctcgtctccttccaggtCCCTGTGACCCTAAGTGCAGTGAGATTGGTTGTGATGGGCCAGGACCAGATCACTGCAGTGACTGTTTACACTACTACTACATACTGAAAAATAACACAaggtagggaccaggacactctgtcatatattcccaaatcatatttttcagga Alignment from CESAR gtCCCTGTGACCCTGAATGCAGTGAGGTTGGATGTGACGGGCCAGGACCAGATCACTGCAGTGACTGCTTACACTACTACTACAAGCTGAAAAATAACACCag cttttggtcctccctgggaccccttcttgcttctcctcgtctccttccaggtCCCTGTGACCCTAAGTGCAGTGAGATTGGTTGTGATGGGCCAGGACCAGATCACTGCAGTGACTGTTTACACTACTACTACATACTGAAAAATAACACAaggtagggaccaggacactctgtcatatattcccaaatcatatttttcagga Alignment from Spaln_aa2Genome GTCCCTGTGACCCTGAATGCAGTGAGGTTGGATGTGACGGGCCAGGACCAGATCACTGCAGTGACTGCTTACACTACTACTACAAGCTGAAAAATAACACCAG cttttggtcctccctgggaccccttcttgcttctcctcgtctccttccagGTCCCTGTGACCCTAAGTGCAGTGAGATTGGTTGTGATGGGCCAGGACCAGATCACTGCAGTGACTGTTTACACTACTACTACATACTGAAAAATAACACAAGgtagggaccaggacactctgtcatatattcccaaatcatatttttcagga Alignment from Spaln_nt2Genome GTCCCTGTGACCCTGAATGCAGTGAGGTTGGATGTGACGGGCCAGGACCAGATCACTGCAGTGACTGCTTACACTACTACTACAAGCTGAAAAATAACACCAG cttttggtcctccctgggaccccttcttgcttctcctcgtctccttccagGTCCCTGTGACCCTAAGTGCAGTGAGATTGGTTGTGATGGGCCAGGACCAGATCACTGCAGTGACTGTTTACACTACTACTACATACTGAAAAATAACACAAGgtagggaccaggacactctgtcatatattcccaaatcatatttttcagga Alignment from Pairagon GTCCCTGTGACCCTGAATGCAGTGAGGTTGGATGTGACGGGCCAGGACCAGATCACTGCAGTGACTGCTTACACTACTACTACAAGCTGAAAAATAACACCAG cttttggtcctccctgggaccccttcttgcttctcctcgtctccttccagGTCCCTGTGACCCTAAGTGCAGTGAGATTGGTTGTGATGGGCCAGGACCAGATCACTGCAGTGACTGTTTACACTACTACTACATACTGAAAAATAACACAAGgtagggaccaggacactctgtcatatattcccaaatcatatttttcagga Alignment from Exonerate_protein2genome GTCCCTGTGACCCTGAATGCAGTGAGGTTGGATGTGACGGGCCAGGACCAGATCACTGCAGTGACTGCTTACACTACTACTACAAGCTGAAAAATAACACCAG cttttggtcctccctgggaccccttcttgcttctcctcgtctccttccagGTCCCTGTGACCCTAAGTGCAGTGAGATTGGTTGTGATGGGCCAGGACCAGATCACTGCAGTGACTGTTTACACTACTACTACATACTGAAAAATAACACAAGgtagggaccaggacactctgtcatatattcccaaatcatatttttcagga Alignment from Exonerate_coding2genome cttttggtcctccctgggaccccttcttgcttctcctcgtctccttccaggtccctgtgaccctaagtgcagtgagattggttgtgatgggccaggaccagatcactgcagtgactgtttacactactactacatactgaaaaataacacaaggtagggaccaggacactctgtcatatattcccaaatcatatttttcagga Alignment from GeneWise GTCCCTGTGACCCTGAATGCAGTGAGGTTGGATGTGACGGGCCAGGACCAGATCACTGCAGTGACTGCTTACACTACTACTACAAGCTGAAAAATAACACCAG cttttggtcctccctgggaccccttcttgcttctcctcgtctccttccagGTCCCTGTGACCCTAAGTGCAGTGAGATTGGTTGTGATGGGCCAGGACCAGATCACTGCAGTGACTGTTTACACTACTACTACATACTGAAAAATAACACAAGgtagggaccaggacactctgtcatatattcccaaatcatatttttcagga #### Pcsk5_ID4327_2 --> 0 - 0 Original Alignment ATCGGTGCACTGAAGGACTACTATCACTTCTACCATAGTAGGACCATTAAAAGGTCTGTTCTCTCGAGCAGAGGAACCCACAGTTTCATTTCAATGGAACCAAAG atttaaataaaagaatatctattactgctctccctgcggtttatccctagATTAGTGTC------------CATCATTTCTACCTTAGTAGAACCGTTATGAGGTCAGTCCTCTCAACCAGAGGAACTCAAAGTTTTATTTCGACAGAACCAAAGgtgagagagcagccaattggctcagaactaaggagcaacactacatcttt Alignment from CESAR ATCGGTGCACTGAAGGACTACTATCACTTCTACCATAGTAGGACCATTAAAAGGTCTGTTCTCTCGAGCAGAGGAACCCACAGTTTCATTTCAATGGAACCAAAG atttaaataaaagaatatctattactgctctccctgcggtttatccctagATTAGTGTC------------CATCATTTCTACCTTAGTAGAACCGTTATGAGGTCAGTCCTCTCAACCAGAGGAACTCAAAGTTTTATTTCGACAGAACCAAAGgtgagagagcagccaattggctcagaactaaggagcaacactacatcttt Alignment from Spaln_aa2Genome ATCGGTGCACTGAAGGACTACTATCACTTCTACCATAGTAGGACCATTAAAAGGTCTGTTCTCTCGAGCAGAGGAACCCACAGTTTCATTTCAATGGAACCAAAG atttaaataaaagaatatctattactgctctccctgcggtttatccctagATTAGTGTC------------CATCATTTCTACCTTAGTAGAACCGTTATGAGGTCAGTCCTCTCAACCAGAGGAACTCAAAGTTTTATTTCGACAGAACCAAAGgtgagagagcagccaattggctcagaactaaggagcaacactacatcttt Alignment from Spaln_nt2Genome ACTACT----ATCACTTCTACCATAGTAGGACCATTAAAAGGTCTGTTCTCTCGAGCAGAGGAACCCACAGTTTCATTTCAATGGAACCAAAG atttaaataaaagaatatctattactgctctccctgcggtttatccctagATTAGTGTCCATCATTTCTACCTTAGTAGAACCGTTATGAGGTCAGTCCTCTCAACCAGAGGAACTCAAAGTTTTATTTCGACAGAACCAAAGgtgagagagcagccaattggctcagaactaaggagcaacactacatcttt Alignment from Pairagon ATCGGTGCACTGAAGGACTACTATCACTTCTACCATAGTAGGACCATTAAAAGGTCTGTTCTCTCGAGCAGAGGAACCCACAGTTTCATTTCAATGGAACCAAAG atttaaataaaagaatatctattactgctctccctgcggtttatccctagATTAGTGT------------CCATCATTTCTACCTTAGTAGAACCGTTATGAGGTCAGTCCTCTCAACCAGAGGAACTCAAAGTTTTATTTCGACAGAACCAAAGgtgagagagcagccaattggctcagaactaaggagcaacactacatcttt Alignment from Exonerate_protein2genome ATCGGTGCACTGAAGGACTACTATCACTTCTACCATAGTAGGACCATTAAAAGGTCTGTTCTCTCGAGCAGAGGAACCCACAGTTTCATTTCAATGGAACCAAAG atttaaataaaagaatatctattactgctctccctgcgGTTTATCCCTAGATTAGTGTCCATCATTTCTACCTTAGTAGAACCGTTATGAGGTCAGTCCTCTCAACCAGAGGAACTCAAAGTTTTATTTCGACAGAACCAAAGgtgagagagcagccaattggctcagaactaaggagcaacactacatcttt Alignment from Exonerate_coding2genome atttaaataaaagaatatctattactgctctccctgcggtttatccctagattagtgtccatcatttctaccttagtagaaccgttatgaggtcagtcctctcaaccagaggaactcaaagttttatttcgacagaaccaaaggtgagagagcagccaattggctcagaactaaggagcaacactacatcttt Alignment from GeneWise ATCGGTGCACTGAAGGACTACTATCACTTCTACCATAGTAGGACCATTAAAAGGTCTGTTCTCTCGAGCAGAGGAACCCACAGTTTCATTTCAATGGAACCAAAG atttaaataaaagaatatctattactgctctccctgcggtttatccctagATTAGTGTC------------CATCATTTCTACCTTAGTAGAACCGTTATGAGGTCAGTCCTCTCAACCAGAGGAACTCAAAGTTTTATTTCGACAGAACCAAAGgtgagagagcagccaattggctcagaactaaggagcaacactacatcttt #### Pcx_ID556_6 --> 0 - 1 Original Alignment GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAg tgtattgaaaatgcagacccatggctgcagaggactctttctctgcacagGAGCTAGAGAAGAATTATACCCGAGCCTACTCTGAAGCCTTGGCGGCTTTTGGGAACAGAGCCCTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAggtaaggaaatagatggctgcaactgcccaatacatctgagagactgccat Alignment from CESAR GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAg tgtattgaaaatgcagacccatggctgcagaggactctttctctgcacagGAGCTAGAGAAGAATTATACCCGAGCCTACTCTGAAGCCTTGGCGGCTTTTGGGAACAGAGCCCTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAggtaaggaaatagatggctgcaactgcccaatacatctgagagactgccat Alignment from Spaln_aa2Genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG tgtattgaaaatgcagacccatggctgcagaggactctttctctgcacagGAGCTAGAGAAGAATTATACCCGAGCCTACTCTGAAGCCTTGGCGGCTTTTGGGAACAGAGCCCTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtaaggaaatagatggctgcaactgcccaatacatctgagagactgccat Alignment from Spaln_nt2Genome tgtattgaaaatgcagacccatggctgcagaggactctttctctgcacaggagctagagaagaattatacccgagcctactctgaagccttggcggcttttgggaacagagccctgtttgtcgagaagtttattggacagccaagccattttgaggtgcagatcctaggtaaggaaatagatggctgcaactgcccaatacatctgagagactgccat Alignment from Pairagon GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG tgtattgaaaatgcagacccatggctgcagaggactctttctctgcacagGAGCTAGAGAAGAATTATACCCGAGCCTACTCTGAAGCCTTGGCGGCTTTTGGGAACAGAGCCCTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtaaggaaatagatggctgcaactgcccaatacatctgagagactgccat Alignment from Exonerate_protein2genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG tgtattgaaaatgcagacccatggctgcagaggactctttctctgcacagGAGCTAGAGAAGAATTATACCCGAGCCTACTCTGAAGCCTTGGCGGCTTTTGGGAACAGAGCCCTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtaaggaaatagatggctgcaactgcccaatacatctgagagactgccat Alignment from Exonerate_coding2genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG tgtattgaaaatgcagacccatggctgcagaggactctttctctgcacagGAGCTAGAGAAGAATTATACCCGAGCCTACTCTGAAGCCTTGGCGGCTTTTGGGAACAGAGCCCTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtaaggaaatagatggctgcaactgcccaatacatctgagagactgccat Alignment from GeneWise GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG tgtattgaaaatgcagacccatggctgcagaggactctttctctgcacagGAGCTAGAGAAGAATTATACCCGAGCCTACTCTGAAGCCTTGGCGGCTTTTGGGAACAGAGCCCTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtaaggaaatagatggctgcaactgcccaatacatctgagagactgccat #### Pcx_ID559_9 --> 1 - 0 Original Alignment tGTGGACCTGGTCCATGCTCAGATCCACGTGTCCGAAGGCCGGAGCCTGCCTGACCTGGGCCTGCGGCAGGAGAACATCCGCATCAAT---------GGCTGTGCCATTCAGTGTCGGGTCACCACCGAGGACCCTGCACGCAGCTTCCAGCCAGACACCGGCCGCATTGAG tcagacccatctaccctctgctattataacgatgtttgttcccatcctagtGTGGACCTATTTCATGCTGAGATCCATGTGTCAGAAGATCGCAGTGTGCCTGACCTAGGCCTACGGCAGGAGAACATTCGCATCATTCGCATCAATGGCTGTGCTGTACAATGCAGAGTCACAACAGAGGACCCTGCAAGTAGCTTCCAGCCAGACATTGGTCGCATTGAAgtaagagggactttcaatgtgaccctctcttacaacttcattatataccc Alignment from CESAR tGTGGACCTGGTCCATGCTCAGATCCACGTGTCCGAAGGCCGGAGCCTGCCTGACCTGGGCCTGCGGCAGGAGAACATC---------CGCATCAATGGCTGTGCCATTCAGTGTCGGGTCACCACCGAGGACCCTGCACGCAGCTTCCAGCCAGACACCGGCCGCATTGAG tcagacccatctaccctctgctattataacgatgtttgttcccatcctagtGTGGACCTATTTCATGCTGAGATCCATGTGTCAGAAGATCGCAGTGTGCCTGACCTAGGCCTACGGCAGGAGAACATTCGCATCATTCGCATCAATGGCTGTGCTGTACAATGCAGAGTCACAACAGAGGACCCTGCAAGTAGCTTCCAGCCAGACATTGGTCGCATTGAAgtaagagggactttcaatgtgaccctctcttacaacttcattatataccc Alignment from Spaln_aa2Genome TGTGGACCTGGTCCATGCTCAGATCCACGTGTCCGAAGGCCGGAGCCTGCCTGACCTGGGCCTGCGGCAGGAGAAC---------ATCCGCATCAATGGCTGTGCCATTCAGTGTCGGGTCACCACCGAGGACCCTGCACGCAGCTTCCAGCCAGACACCGGCCGCATTGAG tcagacccatctaccctctgctattataacgatgtttgttcccatcctagTGTGGACCTATTTCATGCTGAGATCCATGTGTCAGAAGATCGCAGTGTGCCTGACCTAGGCCTACGGCAGGAGAACATTCGCATCATTCGCATCAATGGCTGTGCTGTACAATGCAGAGTCACAACAGAGGACCCTGCAAGTAGCTTCCAGCCAGACATTGGTCGCATTGAAgtaagagggactttcaatgtgaccctctcttacaacttcattatataccc Alignment from Spaln_nt2Genome TGTGGACCTGGTCCATGCTCAGATCCACGTGTCCGAAGGCCGGAGCCTGCCTGACCTGGGCCTGCGGCAGGAGAACATCCGCATCA---------ATGGCTGTGCCATTCAGTGTCGGGTCACCACCGAGGACCCTGCACGCAGCTTCCAGCCAGACACCGGCCGCATTGAG tcagacccatctaccctctgctattataacgatgtttgttcccatcctagTGTGGACCTATTTCATGCTGAGATCCATGTGTCAGAAGATCGCAGTGTGCCTGACCTAGGCCTACGGCAGGAGAACATTCGCATCATTCGCATCAATGGCTGTGCTGTACAATGCAGAGTCACAACAGAGGACCCTGCAAGTAGCTTCCAGCCAGACATTGGTCGCATTGAAgtaagagggactttcaatgtgaccctctcttacaacttcattatataccc Alignment from Pairagon TGTGGACCTGGTCCATGCTCAGATCCACGTGTCCGAAGGCCGGAGCCTGCCTGACCTGGGCCTGCGGCAGGAGAA---------CATCCGCATCAATGGCTGTGCCATTCAGTGTCGGGTCACCACCGAGGACCCTGCACGCAGCTTCCAGCCAGACACCGGCCGCATTGAG tcagacccatctaccctctgctattataacgatgtttgttcccatcctagTGTGGACCTATTTCATGCTGAGATCCATGTGTCAGAAGATCGCAGTGTGCCTGACCTAGGCCTACGGCAGGAGAACATTCGCATCATTCGCATCAATGGCTGTGCTGTACAATGCAGAGTCACAACAGAGGACCCTGCAAGTAGCTTCCAGCCAGACATTGGTCGCATTGAAgtaagagggactttcaatgtgaccctctcttacaacttcattatataccc Alignment from Exonerate_protein2genome TGTGGACCTGGTCCATGCTCAGATCCACGTGTCCGAAGGCCGGAGCCTGCCTGACCTGGGCCTGCGGCAGGAGAAC---------ATCCGCATCAATGGCTGTGCCATTCAGTGTCGGGTCACCACCGAGGACCCTGCACGCAGCTTCCAGCCAGACACCGGCCGCATTGAG tcagacccatctaccctctgctattataacgatgtttgttcccatcctagTGTGGACCTATTTCATGCTGAGATCCATGTGTCAGAAGATCGCAGTGTGCCTGACCTAGGCCTACGGCAGGAGAACATTCGCATCATTCGCATCAATGGCTGTGCTGTACAATGCAGAGTCACAACAGAGGACCCTGCAAGTAGCTTCCAGCCAGACATTGGTCGCATTGAAgtaagagggactttcaatgtgaccctctcttacaacttcattatataccc Alignment from Exonerate_coding2genome TGTGGACCTGGTCCATGCTCAGATCCACGTGTCCGAAGGCCGGAGCCTGCCTGACCTGGGCCTGCGGCAGGAGAAC---------ATCCGCATCAATGGCTGTGCCATTCAGTGTCGGGTCACCACCGAGGACCCTGCACGCAGCTTCCAGCCAGACACCGGCCGCATTGAG tcagacccatctaccctctgctattataacgatgtttgttcccatcctagTGTGGACCTATTTCATGCTGAGATCCATGTGTCAGAAGATCGCAGTGTGCCTGACCTAGGCCTACGGCAGGAGAACATTCGCATCATTCGCATCAATGGCTGTGCTGTACAATGCAGAGTCACAACAGAGGACCCTGCAAGTAGCTTCCAGCCAGACATTGGTCGCATTGAAgtaagagggactttcaatgtgaccctctcttacaacttcattatataccc Alignment from GeneWise TGTGGACCTGGTCCATGCTCAGATCCACGTGTCCGAAGGCCGGAGCCTGCCTGACCTGGGCCTGCGGCAGGAGAACATCCGCATC---------AATGGCTGTGCCATTCAGTGTCGGGTCACCACCGAGGACCCTGCACGCAGCTTCCAGCCAGACACCGGCCGCATTGAG tcagacccatctaccctctgctattataacgatgtttgttcccatcctagTGTGGACCTATTTCATGCTGAGATCCATGTGTCAGAAGATCGCAGTGTGCCTGACCTAGGCCTACGGCAGGAGAACATTCGCATCATTCGCATCAATGGCTGTGCTGTACAATGCAGAGTCACAACAGAGGACCCTGCAAGTAGCTTCCAGCCAGACATTGGTCGCATTGAAgtaagagggactttcaatgtgaccctctcttacaacttcattatataccc #### Pcx_ID564_13 --> 2 - 2 Original Alignment gcCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCaa tcagatgatttatttccccagatgcatcatattttctgcttttgtcccaggaCCACCCCCAGCTGGATTCAGGGACACTCTTTTGCGAGAAGGACCAGAGGGCTTTGCTCATGCCGCACGGAATCATCATGGGCTGTTGTTGACAGACACTATGTTCAGGGATGCTCACCAGTCATTACTGGCCAGTCGTGTGCGCACACATGATCTCAAGAAGATAGCATCCTATGTTGCCCACAACTTTAACAAACTCTCCAGTATGGAAAACTGGGGGGGTGCCACGTTTGCTGTTGCAATGCACTTCCTGTATGAATGCCCTTGGCGGCGCCTCCAGAAGCTGCGGAAGCTAATCCCAAATATCCCATTCCAGATGCTACTCAGGGGGGCCAACGCTGTGGGATATACCAACTATCTTGACAATGTTGTCTTTaagttagtctgaatctgttaggacccggatggtggatttttgagcgttttac Alignment from CESAR gcCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCaa tcagatgatttatttccccagatgcatcatattttctgcttttgtcccaggaCCACCCCCAGCTGGATTCAGGGACACTCTTTTGCGAGAAGGACCAGAGGGCTTTGCTCATGCCGCACGGAATCATCATGGGCTGTTGTTGACAGACACTATGTTCAGGGATGCTCACCAGTCATTACTGGCCAGTCGTGTGCGCACACATGATCTCAAGAAGATAGCATCCTATGTTGCCCACAACTTTAACAAACTCTCCAGTATGGAAAACTGGGGGGGTGCCACGTTTGCTGTTGCAATGCACTTCCTGTATGAATGCCCTTGGCGGCGCCTCCAGAAGCTGCGGAAGCTAATCCCAAATATCCCATTCCAGATGCTACTCAGGGGGGCCAACGCTGTGGGATATACCAACTATCTTGACAATGTTGTCTTTaagttagtctgaatctgttaggacccggatggtggatttttgagcgttttac Alignment from Spaln_aa2Genome GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA tcagatgatttatttccccagatgcatcatattttctgcttttgtcccagGACCACCCCCAGCTGGATTCAGGGACACTCTTTTGCGAGAAGGACCAGAGGGCTTTGCTCATGCCGCACGGAATCATCATGGGCTGTTGTTGACAGACACTATGTTCAGGGATGCTCACCAGTCATTACTGGCCAGTCGTGTGCGCACACATGATCTCAAGAAGATAGCATCCTATGTTGCCCACAACTTTAACAAACTCTCCAGTATGGAAAACTGGGGGGGTGCCACGTTTGCTGTTGCAATGCACTTCCTGTATGAATGCCCTTGGCGGCGCCTCCAGAAGCTGCGGAAGCTAATCCCAAATATCCCATTCCAGATGCTACTCAGGGGGGCCAACGCTGTGGGATATACCAACTATCTTGACAATGTTGTCTTTAAgttagtctgaatctgttaggacccggatggtggatttttgagcgttttac Alignment from Spaln_nt2Genome GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA tcagatgatttatttccccagatgcatcatattttctgcttttgtcccagGACCACCCCCAGCTGGATTCAGGGACACTCTTTTGCGAGAAGGACCAGAGGGCTTTGCTCATGCCGCACGGAATCATCATGGGCTGTTGTTGACAGACACTATGTTCAGGGATGCTCACCAGTCATTACTGGCCAGTCGTGTGCGCACACATGATCTCAAGAAGATAGCATCCTATGTTGCCCACAACTTTAACAAACTCTCCAGTATGGAAAACTGGGGGGGTGCCACGTTTGCTGTTGCAATGCACTTCCTGTATGAATGCCCTTGGCGGCGCCTCCAGAAGCTGCGGAAGCTAATCCCAAATATCCCATTCCAGATGCTACTCAGGGGGGCCAACGCTGTGGGATATACCAACTATCTTGACAATGTTGTCTTTAAgttagtctgaatctgttaggacccggatggtggatttttgagcgttttac Alignment from Pairagon GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA tcagatgatttatttccccagatgcatcatattttctgcttttgtcccagGACCACCCCCAGCTGGATTCAGGGACACTCTTTTGCGAGAAGGACCAGAGGGCTTTGCTCATGCCGCACGGAATCATCATGGGCTGTTGTTGACAGACACTATGTTCAGGGATGCTCACCAGTCATTACTGGCCAGTCGTGTGCGCACACATGATCTCAAGAAGATAGCATCCTATGTTGCCCACAACTTTAACAAACTCTCCAGTATGGAAAACTGGGGGGGTGCCACGTTTGCTGTTGCAATGCACTTCCTGTATGAATGCCCTTGGCGGCGCCTCCAGAAGCTGCGGAAGCTAATCCCAAATATCCCATTCCAGATGCTACTCAGGGGGGCCAACGCTGTGGGATATACCAACTATCTTGACAATGTTGTCTTTAAgttagtctgaatctgttaggacccggatggtggatttttgagcgttttac Alignment from Exonerate_protein2genome GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA tcagatgatttatttccccagatgcatcatattttctgcttttgtcccagGACCACCCCCAGCTGGATTCAGGGACACTCTTTTGCGAGAAGGACCAGAGGGCTTTGCTCATGCCGCACGGAATCATCATGGGCTGTTGTTGACAGACACTATGTTCAGGGATGCTCACCAGTCATTACTGGCCAGTCGTGTGCGCACACATGATCTCAAGAAGATAGCATCCTATGTTGCCCACAACTTTAACAAACTCTCCAGTATGGAAAACTGGGGGGGTGCCACGTTTGCTGTTGCAATGCACTTCCTGTATGAATGCCCTTGGCGGCGCCTCCAGAAGCTGCGGAAGCTAATCCCAAATATCCCATTCCAGATGCTACTCAGGGGGGCCAACGCTGTGGGATATACCAACTATCTTGACAATGTTGTCTTTAAgttagtctgaatctgttaggacccggatggtggatttttgagcgttttac Alignment from Exonerate_coding2genome GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA tcagatgatttatttccccagatgcatcatattttctgcttttgtcccagGACCACCCCCAGCTGGATTCAGGGACACTCTTTTGCGAGAAGGACCAGAGGGCTTTGCTCATGCCGCACGGAATCATCATGGGCTGTTGTTGACAGACACTATGTTCAGGGATGCTCACCAGTCATTACTGGCCAGTCGTGTGCGCACACATGATCTCAAGAAGATAGCATCCTATGTTGCCCACAACTTTAACAAACTCTCCAGTATGGAAAACTGGGGGGGTGCCACGTTTGCTGTTGCAATGCACTTCCTGTATGAATGCCCTTGGCGGCGCCTCCAGAAGCTGCGGAAGCTAATCCCAAATATCCCATTCCAGATGCTACTCAGGGGGGCCAACGCTGTGGGATATACCAACTATCTTGACAATGTTGTCTTTAAgttagtctgaatctgttaggacccggatggtggatttttgagcgttttac Alignment from GeneWise GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA tcagatgatttatttccccagatgcatcatattttctgcttttgtcccagGACCACCCCCAGCTGGATTCAGGGACACTCTTTTGCGAGAAGGACCAGAGGGCTTTGCTCATGCCGCACGGAATCATCATGGGCTGTTGTTGACAGACACTATGTTCAGGGATGCTCACCAGTCATTACTGGCCAGTCGTGTGCGCACACATGATCTCAAGAAGATAGCATCCTATGTTGCCCACAACTTTAACAAACTCTCCAGTATGGAAAACTGGGGGGGTGCCACGTTTGCTGTTGCAATGCACTTCCTGTATGAATGCCCTTGGCGGCGCCTCCAGAAGCTGCGGAAGCTAATCCCAAATATCCCATTCCAGATGCTACTCAGGGGGGCCAACGCTGTGGGATATACCAACTATCTTGACAATGTTGTCTTTAAgttagtctgaatctgttaggacccggatggtggatttttgagcgttttac #### Pdcd11_ID10115_9 --> 0 - 2 Original Alignment GTCAGCCATCTCTCTGATTCTAAGAAAGCATTCAACGCTGAGGCCTTCAAACCGGGGAGCACTCACAAGTGTAGAATCATTGACTACAGCCAGATGGATGAGCTGGCCTTGCTCTCTCTGCGGaa acatcccatcaaatgaatagctttactcgggctgtcattggtccatacagGTAAGCCATCTCTCTGATTCTAAAAAAGCATTCAATGCTGAGGCCCTGAAACCAGGGAGCACTCATGAGTGTAGGATCATTGACTATAGCCAGATGGATGAGCTGGCCCTGCTCTCACTGCGGaagtaatggccatttaccacacatgtgcatgtgcaattttgcagtgcctcta Alignment from CESAR GTCAGCCATCTCTCTGATTCTAAGAAAGCATTCAACGCTGAGGCCTTCAAACCGGGGAGCACTCACAAGTGTAGAATCATTGACTACAGCCAGATGGATGAGCTGGCCTTGCTCTCTCTGCGGaa acatcccatcaaatgaatagctttactcgggctgtcattggtccatacagGTAAGCCATCTCTCTGATTCTAAAAAAGCATTCAATGCTGAGGCCCTGAAACCAGGGAGCACTCATGAGTGTAGGATCATTGACTATAGCCAGATGGATGAGCTGGCCCTGCTCTCACTGCGGaagtaatggccatttaccacacatgtgcatgtgcaattttgcagtgcctcta Alignment from Spaln_aa2Genome GTCAGCCATCTCTCTGATTCTAAGAAAGCATTCAACGCTGAGGCCTTCAAACCGGGGAGCACTCACAAGTGTAGAATCATTGACTACAGCCAGATGGATGAGCTGGCCTTGCTCTCTCTGCGGAA acatcccatcaaatgaatagctttactcgggctgtcattggtccatacagGTAAGCCATCTCTCTGATTCTAAAAAAGCATTCAATGCTGAGGCCCTGAAACCAGGGAGCACTCATGAGTGTAGGATCATTGACTATAGCCAGATGGATGAGCTGGCCCTGCTCTCACTGCGGAAgtaatggccatttaccacacatgtgcatgtgcaattttgcagtgcctcta Alignment from Spaln_nt2Genome GTCAGCCATCTCTCTGATTCTAAGAAAGCATTCAACGCTGAGGCCTTCAAACCGGGGAGCACTCACAAGTGTAGAATCATTGACTACAGCCAGATGGATGAGCTGGCCTTGCTCTCTCTGCGGAA acatcccatcaaatgaatagctttactcgggctgtcattggtccatacagGTAAGCCATCTCTCTGATTCTAAAAAAGCATTCAATGCTGAGGCCCTGAAACCAGGGAGCACTCATGAGTGTAGGATCATTGACTATAGCCAGATGGATGAGCTGGCCCTGCTCTCACTGCGGAAgtaatggccatttaccacacatgtgcatgtgcaattttgcagtgcctcta Alignment from Pairagon GTCAGCCATCTCTCTGATTCTAAGAAAGCATTCAACGCTGAGGCCTTCAAACCGGGGAGCACTCACAAGTGTAGAATCATTGACTACAGCCAGATGGATGAGCTGGCCTTGCTCTCTCTGCGGAA acatcccatcaaatgaatagctttactcgggctgtcattggtccatacagGTAAGCCATCTCTCTGATTCTAAAAAAGCATTCAATGCTGAGGCCCTGAAACCAGGGAGCACTCATGAGTGTAGGATCATTGACTATAGCCAGATGGATGAGCTGGCCCTGCTCTCACTGCGGAAgtaatggccatttaccacacatgtgcatgtgcaattttgcagtgcctcta Alignment from Exonerate_protein2genome GTCAGCCATCTCTCTGATTCTAAGAAAGCATTCAACGCTGAGGCCTTCAAACCGGGGAGCACTCACAAGTGTAGAATCATTGACTACAGCCAGATGGATGAGCTGGCCTTGCTCTCTCTGCGGAA acatcccatcaaatgaatagctttactcgggctgtcattggtccatacagGTAAGCCATCTCTCTGATTCTAAAAAAGCATTCAATGCTGAGGCCCTGAAACCAGGGAGCACTCATGAGTGTAGGATCATTGACTATAGCCAGATGGATGAGCTGGCCCTGCTCTCACTGCGGAAgtaatggccatttaccacacatgtgcatgtgcaattttgcagtgcctcta Alignment from Exonerate_coding2genome GTCAGCCATCTCTCTGATTCTAAGAAAGCATTCAACGCTGAGGCCTTCAAACCGGGGAGCACTCACAAGTGTAGAATCATTGACTACAGCCAGATGGATGAGCTGGCCTTGCTCTCTCTGCGGAA acatcccatcaaatgaatagctttactcgggctgtcattggtccatacagGTAAGCCATCTCTCTGATTCTAAAAAAGCATTCAATGCTGAGGCCCTGAAACCAGGGAGCACTCATGAGTGTAGGATCATTGACTATAGCCAGATGGATGAGCTGGCCCTGCTCTCACTGCGGAAgtaatggccatttaccacacatgtgcatgtgcaattttgcagtgcctcta Alignment from GeneWise GTCAGCCATCTCTCTGATTCTAAGAAAGCATTCAACGCTGAGGCCTTCAAACCGGGGAGCACTCACAAGTGTAGAATCATTGACTACAGCCAGATGGATGAGCTGGCCTTGCTCTCTCTGCGGAA acatcccatcaaatgaatagctttactcgggctgtcattggtccatacagGTAAGCCATCTCTCTGATTCTAAAAAAGCATTCAATGCTGAGGCCCTGAAACCAGGGAGCACTCATGAGTGTAGGATCATTGACTATAGCCAGATGGATGAGCTGGCCCTGCTCTCACTGCGGAAgtaatggccatttaccacacatgtgcatgtgcaattttgcagtgcctcta #### Pdcd11_ID10116_10 --> 1 - 0 Original Alignment aTCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG aaacagccctatccagccccctgtagtcgtaccctgtgcttgccttttagaTCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATTGGAACAGTAGTAAAGgtatgcactgcatattcttttgagaaacacattagctgttagcttataag Alignment from CESAR aTCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG aaacagccctatccagccccctgtagtcgtaccctgtgcttgccttttagaTCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATTGGAACAGTAGTAAAGgtatgcactgcatattcttttgagaaacacattagctgttagcttataag Alignment from Spaln_aa2Genome ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG aaacagccctatccagccccctgtagtcgtaccctgtgcttgccttttagATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATTGGAACAGTAGTAAAGgtatgcactgcatattcttttgagaaacacattagctgttagcttataag Alignment from Spaln_nt2Genome ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG aaacagccctatccagccccctgtagtcgtaccctgtgcttgccttttagATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATTGGAACAGTAGTAAAGgtatgcactgcatattcttttgagaaacacattagctgttagcttataag Alignment from Pairagon ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG aaacagccctatccagccccctgtagtcgtaccctgtgcttgccttttagATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATTGGAACAGTAGTAAAGgtatgcactgcatattcttttgagaaacacattagctgttagcttataag Alignment from Exonerate_protein2genome aaacagccctatccagccccctgtagtcgtaccctgtgcttgccttttagatcaattattgcagctccattccttagatatcatgacatcaaaattggaacagtagtaaaggtatgcactgcatattcttttgagaaacacattagctgttagcttataag Alignment from Exonerate_coding2genome aaacagccctatccagccccctgtagtcgtaccctgtgcttgccttttagatcaattattgcagctccattccttagatatcatgacatcaaaattggaacagtagtaaaggtatgcactgcatattcttttgagaaacacattagctgttagcttataag Alignment from GeneWise ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG aaacagccctatccagccccctgtagtcgtaccctgtgcttgccttttagATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATTGGAACAGTAGTAAAGgtatgcactgcatattcttttgagaaacacattagctgttagcttataag #### Pdcd11_ID10118_12 --> 0 - 0 Original Alignment GTTTTGCTCTGTGACCCTGAAGCCAAGAAGCTAATTATGACCCTGAAAAAAACCCTTGTCACATCCAAACTGTCTCTCATCACCTGCTATGAGGGTGCCAAGCCTGGCCTGCAGACGCACGGTGTTATCATACGGGTCAAGGACTATGGCTGCATTGTGAAGTTCTACAACGATGTGCAGGGGCTAGTGCCTAAGCATGAGCTTAGCACCCAGCACATCCCGGACCCAGAGACGGTCTTTTACACTGGCCAG atctctagaggtgacacaatgtgactgtgctgtgttctccctgctgacagGTTTTGCTT---GACCCTGAGGCTAAGAAGCTTATCATGATCCTGAAAAAAAGTCTGGTCACACCTAAACTTTCT------------------CGGGCCAAGCCTGGAGCACAGCCCCCTGGTATTATCATATGCATTAAACATTATGGCTGCATTGTTAAGTTTTATAATGATGTCCAG---CTG---------------------------------------------GTGGTCTTTTACCCAGGCCAGgtaagccttgcagaccaatgtgtgagaataaggttgaagggcccttgcat Alignment from CESAR GTTTTGCTCTGTGACCCTGAAGCCAAGAAGCTAATTATGACCCTGAAAAAAACCCTTGTCACATCCAAACTGTCTCTCATCACCTGCTATGAGGGTGCCAAGCCTGGCCTGCAGACGCACGGTGTTATCATACGGGTCAAGGACTATGGCTGCATTGTGAAGTTCTACAACGATGTGCAGGGGCTAGTGCCTAAGCATGAGCTTAGCACCCAGCACATCCCGGACCCAGAGACGGTCTTTTACACTGGCCAG atctctagaggtgacacaatgtgactgtgctgtgttctccctgctgacagGTTTTGCTT---GACCCTGAGGCTAAGAAGCTTATCATGATCCTGAAAAAAAGTCTGGTCACACCTAAACTTTCTCGG------------------GCCAAGCCTGGAGCACAGCCCCCTGGTATTATCATATGCATTAAACATTATGGCTGCATTGTTAAGTTTTATAATGATGTCCAG---------------------CTG---------------------------GTGGTCTTTTACCCAGGCCAGgtaagccttgcagaccaatgtgtgagaataaggttgaagggcccttgcat Alignment from Spaln_aa2Genome GTTTTGCTCTGTGACCCTGAAGCCAAGAAGCTAATTATGACCCTGAAAAAAACCCTTGTCACATCCAAACTGTCTCTCATCACCTGCTATGAGGGTGCCAAGCCTGGCCTGCAGACGCACGGTGTTATCATACGGGTCAAGGACTATGGCTGCATTGTGAAGTTCTACAACGATGTGCAGGGGCTAGTG------CCTAAGCAT---GAGCTTAGCACCCAGCACATCCCGGACCC atctctagaggtgacacaatgtgactgtgctgtgttctccctgctgacagGTTTTGCTT---GACCCTGAGGCTAAGAAGCTTATCATGATCCTGAAAAAAAGTCTGGTCACACCTAAACTTTCT------------------CGGGCCAAGCCTGGAGCACAGCCCCCTGGTATTATCATATGCATTAAACATTATGGCTGCATTGTTAAGTTTTATAATGATGTCCAGCTGGTGGTCTTTTACCCAGGCCAGGTAAGCCTTGCAGACCAATGTGTGAGAATAAGgttgaagggcccttgcat Alignment from Spaln_nt2Genome GTTTTGCTCTGTGACCCTGAAGCCAAGAAGCTAATTATGACCCTGAAAAAAACCCTTGTCACATCCAAACTGTCTCTCATCACCTGCTATGAGGGTGCCAAGCCTGGCCTGCAGACGCACGGTGTTATCATACGGGTCAAGGACTATGGCTGCATTGTGAAGTTCTACAACGATGTGCAGGGGCTAGTGCCTAAGCATGAGCTTAG atctctagaggtgacacaatgtgactgtgctgtgttctccctgctgacagGTTTTGCT---TGACCCTGAGGCTAAGAAGCTTATCATGATCCTGAAAAAAAGTCTGGTCACACCTAAACTTTCTC------------------GGGCCAAGCCTGGAGCACAGCCCCCTGGTATTATCATATGCATTAAACATTATGGCTGCATTGTTAAGTTTTATAATGATGTCCAGCTGGTGGTCTTTTACC--CAGGCCAGgtaagccttgcagaccaatgtgtgagaataaggttgaagggcccttgcat Alignment from Pairagon GTTTTGCTCTGTGACCCTGAAGCCAAGAAGCTAATTATGACCCTGAAAAAAACCCTTGTCACATCCAAACTGTCTCTCATCACCTGCTATGAGGGTGCCAAGCCTGGCCTGCAGACGCACGGTGTTATCATACGGGTCAAGGACTATGGCTGCATTGTGAAGTTCTACAACGATGTGCAGGGGCTAGTGCCTAAGCATGAGCTTAGCACCCAGCACATCCCGGACCCAGAGACGGTCTTTTACACTGGCCAG atctctagaggtgacacaatgtgactgtgctgtgttctccctgctgacagGTTTTGCT---TGACCCTGAGGCTAAGAAGCTTATCATGATCCTGAAAAAAAGTCTGGTCACACCTAAACTTTCTC------------------GGGCCAAGCCTGGAGCACAGCCCCCTGGTATTATCATATGCATTAAACATTATGGCTGCATTGTTAAGTTTTATAATGATGTCCAGCTGGT------------------------------------------------GGTCTTTTACCCAGGCCAGgtaagccttgcagaccaatgtgtgagaataaggttgaagggcccttgcat Alignment from Exonerate_protein2genome GAAGCTAATTATG------ACCCTGAAAAAAACCCTTGTCACATCCAAACTGTCTCTCATCACC---TGCTATGAGGGTGCCAAGCCTGGCCTGCAGACGCACGGTGTTATCATACGGGTCAAGGACTATGGCTGCATTGTGAAGTTCTACAACGATGTGCAGGGGCTAGTGCCTAAGCATGAGCTT atctctagaggtgacacaatgtgactgtgctgtgttctccctgctgACAGGTTTTGCTTGACCCTGAGGCTAAGAAGCTTATCATGATCCTGAAAAAAAGTCTGGTCACACCTAAACTTTCTCGGGCCAAGCCTGGAGCACAGCCCCCTGGTATTATCATATGCATTAAACATTATGGCTGCATTGTTAAGTTTTATAATGATGTCCAGCTGGTGGTCTTTTACCCAGGCCAGgtaagccttgcagaccaatgtgtgagaataaggttgaagggcccttgcat Alignment from Exonerate_coding2genome GAAGCTAATTATG------ACCCTGAAAAAAACCCTTGTCACATCCAAACTGTCTCTCATCACC---TGCTATGAGGGTGCCAAGCCTGGCCTGCAGACGCACGGTGTTATCATACGGGTCAAGGACTATGGCTGCATTGTGAAGTTCTACAACGATGTGCAGGGGCTAGTGCCTAAGCATGAGCTT atctctagaggtgacacaatgtgactgtgctgtgttctccctgctgACAGGTTTTGCTTGACCCTGAGGCTAAGAAGCTTATCATGATCCTGAAAAAAAGTCTGGTCACACCTAAACTTTCTCGGGCCAAGCCTGGAGCACAGCCCCCTGGTATTATCATATGCATTAAACATTATGGCTGCATTGTTAAGTTTTATAATGATGTCCAGCTGGTGGTCTTTTACCCAGGCCAGgtaagccttgcagaccaatgtgtgagaataaggttgaagggcccttgcat Alignment from GeneWise GTTTTGCTCTGTGACCCTGAAGCCAAGAAGCTAATTATGACCCTGAAAAAAACCCTTGTCACATCCAAACTGTCTCTCATCACCTGCTATGAGGGTGCCAAGCCTGGCCTGCAGACGCACGGTGTTATCATACGGGTCAAGGACTATGGCTGCATTGTGAAGTTCTACAACGATGTGCAGGGGCTAGTGCCTAAGCATGAGCTTAGCACCCAGCACATCCCGGACCCAGAGACGGTCTTTTACACTGGCCAG atctctagaggtgacacaatgtgactgtgctgtgttctccctgctgacagGTTTTGCTT---GACCCTGAGGCTAAGAAGCTTATCATGATCCTGAAAAAAAGTCTGGTCACACCTAAACTTTCTCGG------------------GCCAAGCCTGGAGCACAGCCCCCTGGTATTATCATATGCATTAAACATTATGGCTGCATTGTTAAGTTTTATAATGATGTCCAG---CTGGTG---------------------------------------------GTCTTTTACCCAGGCCAGgtaagccttgcagaccaatgtgtgagaataaggttgaagggcccttgcat #### Pdcd11_ID10119_13 --> 0 - 0 Original Alignment GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcttgaggacctgccactgcagagaggtcttctgtttcttctttgtccagGTGGTAAAGGTGGCCGTGTTGAGCTGTGAGCCTTCCAAGGAAAAAATGCTCCTCTCCTTCAGGTTGCTGAGTGACTCACAGCCAAAAGATCCTGGTGTTGAAACCAGTCAGAAAAAGACAGAAGGCGTGCGCATTGGCCAGgtgagtaccctatgattttgactgatggtaacagcatcacagcatctgag Alignment from CESAR GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcttgaggacctgccactgcagagaggtcttctgtttcttctttgtccagGTGGTAAAGGTGGCCGTGTTGAGCTGTGAGCCTTCCAAGGAAAAAATGCTCCTCTCCTTCAGGTTGCTGAGTGACTCACAGCCAAAAGATCCTGGTGTTGAAACCAGTCAGAAAAAGACAGAAGGCGTGCGCATTGGCCAGgtgagtaccctatgattttgactgatggtaacagcatcacagcatctgag Alignment from Spaln_aa2Genome AGAGACGGTC---TTTTACACTGGCCAGGTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcttgaggacctgccactgcagAGAGGTCTTCTGTTTCTTCTTTGTCCAGGTGGTAAAGGTGGCCGTGTTGAGCTGTGAGCCTTCCAAGGAAAAAATGCTCCTCTCCTTCAGGTTGCTGAGTGACTCACAGCCAAAAGATCCTGGTGTTGAAACCAGTCAGAAAAAGACAGAAGGCGTGCGCATTGGCCAGgtgagtaccctatgattttgactgatggtaacagcatcacagcatctgag Alignment from Spaln_nt2Genome AGAGACGGTCTTTTACAC---TGGCCAGGTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcttgaggacctgccactgcagAGAGGTCTTCTGTTTCTTCTTTGTCCAGGTGGTAAAGGTGGCCGTGTTGAGCTGTGAGCCTTCCAAGGAAAAAATGCTCCTCTCCTTCAGGTTGCTGAGTGACTCACAGCCAAAAGATCCTGGTGTTGAAACCAGTCAGAAAAAGACAGAAGGCGTGCGCATTGGCCAGgtgagtaccctatgattttgactgatggtaacagcatcacagcatctgag Alignment from Pairagon GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcttgaggacctgccactgcagagaggtcttctgtttcttctttgtccagGTGGTAAAGGTGGCCGTGTTGAGCTGTGAGCCTTCCAAGGAAAAAATGCTCCTCTCCTTCAGGTTGCTGAGTGACTCACAGCCAAAAGATCCTGGTGTTGAAACCAGTCAGAAAAAGACAGAAGGCGTGCGCATTGGCCAGgtgagtaccctatgattttgactgatggtaacagcatcacagcatctgag Alignment from Exonerate_protein2genome CAGAGACGGTCTTTTACACTGGCCAGGTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcttgaggacctgccactgcagagAGGTCTTCTGTTTCTTCTTTGTCCAGGTGGTAAAGGTGGCCGTGTTGAGCTGTGAGCCTTCCAAGGAAAAAATGCTCCTCTCCTTCAGGTTGCTGAGTGACTCACAGCCAAAAGATCCTGGTGTTGAAACCAGTCAGAAAAAGACAGAAGGCGTGCGCATTGGCCAGgtgagtaccctatgattttgactgatggtaacagcatcacagcatctgag Alignment from Exonerate_coding2genome CAGAGACGGTCTTTTACACTGGCCAGGTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcttgaggacctgccactgcagagAGGTCTTCTGTTTCTTCTTTGTCCAGGTGGTAAAGGTGGCCGTGTTGAGCTGTGAGCCTTCCAAGGAAAAAATGCTCCTCTCCTTCAGGTTGCTGAGTGACTCACAGCCAAAAGATCCTGGTGTTGAAACCAGTCAGAAAAAGACAGAAGGCGTGCGCATTGGCCAGgtgagtaccctatgattttgactgatggtaacagcatcacagcatctgag Alignment from GeneWise GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcttgaggacctgccactgcagagaggtcttctgtttcttctttgtccagGTGGTAAAGGTGGCCGTGTTGAGCTGTGAGCCTTCCAAGGAAAAAATGCTCCTCTCCTTCAGGTTGCTGAGTGACTCACAGCCAAAAGATCCTGGTGTTGAAACCAGTCAGAAAAAGACAGAAGGCGTGCGCATTGGCCAGgtgagtaccctatgattttgactgatggtaacagcatcacagcatctgag #### Pdcd11_ID10120_14 --> 0 - 0 Original Alignment TTGGTGGATGTGAAGGTCCTGGAGAAGACCAAAACCGGGCTGGAGGTGGCCATCCTGCCCCATAACACCCCTGCTTTCCTCCCCACGCCACACCTGTCCGACCACGCTGCCAATGGCCCACTGTTGCACCACTGGCTCCAGACAGGTGACACCCTTCACCGAGTTCTGTGTTTGAGCCAGAGTGAGAGACACATT ggaggatggccttttctttgatatgtaaataatcttttgatattttacagGTTGTGGATGTGAAGGTCCTACACAAAACCAAAACCGGGCTAGAGGTAGCCATTCTGCCCCATAAT------GCATTTCTTCCCACACCCCACTTGTCTGACCATGCTACTAATGGTCCACTGCTACACCACTGGCTTCAAGCAGGTGATACTCTTCACCAA---CTCTGCTTAAGCCAGTGTGAAAGACACATTgtgagttcacatactctgttattggatagggccttgcatgtgtggtgact Alignment from CESAR TTGGTGGATGTGAAGGTCCTGGAGAAGACCAAAACCGGGCTGGAGGTGGCCATCCTGCCCCATAACACCCCTGCTTTCCTCCCCACGCCACACCTGTCCGACCACGCTGCCAATGGCCCACTGTTGCACCACTGGCTCCAGACAGGTGACACCCTTCACCGAGTTCTGTGTTTGAGCCAGAGTGAGAGACACATT ggaggatggccttttctttgatatgtaaataatcttttgatattttacagGTTGTGGATGTGAAGGTCCTACACAAAACCAAAACCGGGCTAGAGGTAGCCATTCTGCCCCATAAT------GCATTTCTTCCCACACCCCACTTGTCTGACCATGCTACTAATGGTCCACTGCTACACCACTGGCTTCAAGCAGGTGATACTCTTCACCAA---CTCTGCTTAAGCCAGTGTGAAAGACACATTgtgagttcacatactctgttattggatagggccttgcatgtgtggtgact Alignment from Spaln_aa2Genome TTGGTGGATGTGAAGGTCCTGGAGAAGACCAAAACCGGGCTGGAGGTGGCCATCCTGCCCCATAACACCCCTGCTTTCCTCCCCACGCCACACCTGTCCGACCACGCTGCCAATGGCCCACTGTTGCACCACTGGCTCCAGACAGGTGACACCCTTCACCGAGTTCTGTGTTTGAGCCAGAGTGAGAGACACATT ggaggatggccttttctttgatatgtaaataatcttttgatattttacagGTTGTGGATGTGAAGGTCCTACACAAAACCAAAACCGGGCTAGAGGTAGCCATTCTGCCCCATAAT------GCATTTCTTCCCACACCCCACTTGTCTGACCATGCTACTAATGGTCCACTGCTACACCACTGGCTTCAAGCAGGTGATACTCTTCACCAA---CTCTGCTTAAGCCAGTGTGAAAGACACATTgtgagttcacatactctgttattggatagggccttgcatgtgtggtgact Alignment from Spaln_nt2Genome TTGGTGGATGTGAAGGTCCTGGAGAAGACCAAAACCGGGCTGGAGGTGGCCATCCTGCCCCATAACACCCCTGCTTTCCTCCCCACGCCACACCTGTCCGACCACGCTGCCAATGGCCCACTGTTGCACCACTGGCTCCAGACAGGTGACACCCTTCACCGAGTTCTGTGTTTGAGCCAGAGTGAGAGACACATT ggaggatggccttttctttgatatgtaaataatcttttgatattttacagGTTGTGGATGTGAAGGTCCTACACAAAACCAAAACCGGGCTAGAGGTAGCCATTCTGCCCCATAA------TGCATTTCTTCCCACACCCCACTTGTCTGACCATGCTACTAATGGTCCACTGCTACACCACTGGCTTCAAGCAGGTGATACTCTTCACCAA---CTCTGCTTAAGCCAGTGTGAAAGACACATTgtgagttcacatactctgttattggatagggccttgcatgtgtggtgact Alignment from Pairagon TTGGTGGATGTGAAGGTCCTGGAGAAGACCAAAACCGGGCTGGAGGTGGCCATCCTGCCCCATAACACCCCTGCTTTCCTCCCCACGCCACACCTGTCCGACCACGCTGCCAATGGCCCACTGTTGCACCACTGGCTCCAGACAGGTGACACCCTTCACCGAGTTCTGTGTTTGAGCCAGAGTGAGAGACACATT ggaggatggccttttctttgatatgtaaataatcttttgatattttacagGTTGTGGATGTGAAGGTCCTACACAAAACCAAAACCGGGCTAGAGGTAGCCATTCTGCCCCATAA------TGCATTTCTTCCCACACCCCACTTGTCTGACCATGCTACTAATGGTCCACTGCTACACCACTGGCTTCAAGCAGGTGATACTCTTCACCAA---CTCTGCTTAAGCCAGTGTGAAAGACACATTgtgagttcacatactctgttattggatagggccttgcatgtgtggtgact Alignment from Exonerate_protein2genome TTGGTGGATGTGAAGGTCCTGGAGAAGACCAAAACCGGGCTGGAGGTGGCCATCCTGCCCCATAACACCCCTGCTTTCCTCCCCACGCCACACCTGTCCGACCACGCTGCCAATGGCCCACTGTTGCACCACTGGCTCCAGACAGGTGACACCCTTCACCGAGTTCTGTGTTTGAGCCAGAGTGAGAGACACATT ggaggatggccttttctttgatatgtaaataatcttttgatattttacagGTTGTGGATGTGAAGGTCCTACACAAAACCAAAACCGGGCTAGAGGTAGCCATTCTGCCCCATAAT------GCATTTCTTCCCACACCCCACTTGTCTGACCATGCTACTAATGGTCCACTGCTACACCACTGGCTTCAAGCAGGTGATACTCTTCACCAA---CTCTGCTTAAGCCAGTGTGAAAGACACATTgtgagttcacatactctgttattggatagggccttgcatgtgtggtgact Alignment from Exonerate_coding2genome TTGGTGGATGTGAAGGTCCTGGAGAAGACCAAAACCGGGCTGGAGGTGGCCATCCTGCCCCATAACACCCCTGCTTTCCTCCCCACGCCACACCTGTCCGACCACGCTGCCAATGGCCCACTGTTGCACCACTGGCTCCAGACAGGTGACACCCTTCACCGAGTTCTGTGTTTGAGCCAGAGTGAGAGACACATT ggaggatggccttttctttgatatgtaaataatcttttgatattttacagGTTGTGGATGTGAAGGTCCTACACAAAACCAAAACCGGGCTAGAGGTAGCCATTCTGCCCCATAAT------GCATTTCTTCCCACACCCCACTTGTCTGACCATGCTACTAATGGTCCACTGCTACACCACTGGCTTCAAGCAGGTGATACTCTTCACCAA---CTCTGCTTAAGCCAGTGTGAAAGACACATTgtgagttcacatactctgttattggatagggccttgcatgtgtggtgact Alignment from GeneWise TTGGTGGATGTGAAGGTCCTGGAGAAGACCAAAACCGGGCTGGAGGTGGCCATCCTGCCCCATAACACCCCTGCTTTCCTCCCCACGCCACACCTGTCCGACCACGCTGCCAATGGCCCACTGTTGCACCACTGGCTCCAGACAGGTGACACCCTTCACCGAGTTCTGTGTTTGAGCCAGAGTGAGAGACACATT ggaggatggccttttctttgatatgtaaataatcttttgatattttacagGTTGTGGATGTGAAGGTCCTACACAAAACCAAAACCGGGCTAGAGGTAGCCATTCTGCCCCATAAT------GCATTTCTTCCCACACCCCACTTGTCTGACCATGCTACTAATGGTCCACTGCTACACCACTGGCTTCAAGCAGGTGATACTCTTCACCAA---CTCTGCTTAAGCCAGTGTGAAAGACACATTgtgagttcacatactctgttattggatagggccttgcatgtgtggtgact #### Pdcd11_ID10122_16 --> 0 - 1 Original Alignment ATCATGAGTGACAAGTTCGTAACCACTCCAAGTGAACACTTTGTGGAGGGTCAGACAGTCGTTGCTAAGGTGACCAATGTGGATGAATCGAAGCAGAGGATGCTGCTGTCTCTGCGGCTGTCAGACTGCAGTCTGGGG---GATTCGGCCAGCACCAGCTTCCTCCTCCTGTGCCAGTGCCTGGAAGAGCTGCAGGGCATTCGCAGCCTCATGAGCAACCAAg ctctgttggatgtgattctttcctatgtgcttttttctgtatgataccagATCATGAGTGACAGGTCTGTTACTACTCCAGGTGAACATATTGTGGAAGGGCAGACAGTAATTTCAAAAGTGACTAATGTGGATGAAACAAAGGAGAGAATGTTGTTGTCATTCCGACTGACCCACTGCAGTTTGGGTGGCGAT---------------TTCCTTCTTCTGTGG---TGCCTAGAAGAGATACAGGGCATTAGCAGTCTGATGAGCACCCAAggtatggtttacccttaggacactagttatcgcctcattgtatacttgacc Alignment from CESAR ATCATGAGTGACAAGTTCGTAACCACTCCAAGTGAACACTTTGTGGAGGGTCAGACAGTCGTTGCTAAGGTGACCAATGTGGATGAATCGAAGCAGAGGATGCTGCTGTCTCTGCGGCTGTCAGACTGCAGTCTGGGGGATTCGGCCAGCACCAGCTTCCTCCTCCTGTGCCAGTGCCTGGAAGAGCTGCAGGGCATTCGCAGCCTCATGAGCAACCAAg ctctgttggatgtgattctttcctatgtgcttttttctgtatgataccagATCATGAGTGACAGGTCTGTTACTACTCCAGGTGAACATATTGTGGAAGGGCAGACAGTAATTTCAAAAGTGACTAATGTGGATGAAACAAAGGAGAGAATGTTGTTGTCATTCCGACTGACCCACTGCAGTTTGGGTGGC------------GATTTCCTTCTTCTGTGG---TGCCTAGAAGAGATACAGGGCATTAGCAGTCTGATGAGCACCCAAggtatggtttacccttaggacactagttatcgcctcattgtatacttgacc Alignment from Spaln_aa2Genome ATCATGAGTGACAAGTTCGTAACCACTCCAAGTGAACACTTTGTGGAGGGTCAGACAGTCGTTGCTAAGGTGACCAATGTGGATGAATCGAAGCAGAGGATGCTGCTGTCTCTGCGGCTGTCAGACTGCAGTCTGGGGGATTCGGCCAGCACCAGCTTCCTCCTCCTGTGCCAGTGCCTGGAAGAGCTGCAGGGCATTCGCAGCCTCATGAGCAACCAAG ctctgttggatgtgattctttcctatgtgcttttttctgtatgataccagATCATGAGTGACAGGTCTGTTACTACTCCAGGTGAACATATTGTGGAAGGGCAGACAGTAATTTCAAAAGTGACTAATGTGGATGAAACAAAGGAGAGAATGTTGTTGTCATTCCGACTGACCCACTGCAGTTTGGGTGGC------------GATTTCCTTCTTCTGTGG---TGCCTAGAAGAGATACAGGGCATTAGCAGTCTGATGAGCACCCAAGgtatggtttacccttaggacactagttatcgcctcattgtatacttgacc Alignment from Spaln_nt2Genome ATCATGAGTGACAAGTTCGTAACCACTCCAAGTGAACACTTTGTGGAGGGTCAGACAGTCGTTGCTAAGGTGACCAATGTGGATGAATCGAAGCAGAGGATGCTGCTGTCTCTGCGGCTGTCAGACTGCAGTCTGGGGGATTCGGCCAGCACCAGCTTCCTCCTCCTGTGCCAGTGCCTGGAAGAGCTGCAGGGCATTCGCAGCCTCATGAGCAACCAAG ctctgttggatgtgattctttcctatgtgcttttttctgtatgataccagATCATGAGTGACAGGTCTGTTACTACTCCAGGTGAACATATTGTGGAAGGGCAGACAGTAATTTCAAAAGTGACTAATGTGGATGAAACAAAGGAGAGAATGTTGTTGTCATTCCGACTGACCCACTGCAGTTTGGG-----TGGCGA-------TTTCCTTCTTCTGTG---GTGCCTAGAAGAGATACAGGGCATTAGCAGTCTGATGAGCACCCAAGgtatggtttacccttaggacactagttatcgcctcattgtatacttgacc Alignment from Pairagon ATCATGAGTGACAAGTTCGTAACCACTCCAAGTGAACACTTTGTGGAGGGTCAGACAGTCGTTGCTAAGGTGACCAATGTGGATGAATCGAAGCAGAGGATGCTGCTGTCTCTGCGGCTGTCAGACTGCAGTCTGGGGGATTCGGCCAGCACCAGC---TTCCTCCTCCTGTGCCAGTGCCTGGAAGAGCTGCAGGGCATTCGCAGCCTCATGAGCAACCAAG ctctgttggatgtgattctttcctatgtgcttttttctgtatgataccagATCATGAGTGACAGGTCTGTTACTACTCCAGGTGAACATATTGTGGAAGGGCAGACAGTAATTTCAAAAGTGACTAATGTGGATGAAACAAAGGAGAGAATGTTGTTGTCATTCCGACTGACCCACTGCAGTTTGGGTG---------------GCGATTTCCTTCTTCTGTG---GTGCCTAGAAGAGATACAGGGCATTAGCAGTCTGATGAGCACCCAAGgtatggtttacccttaggacactagttatcgcctcattgtatacttgacc Alignment from Exonerate_protein2genome ATCATGAGTGACAAGTTCGTAACCACTCCAAGTGAACACTTTGTGGAGGGTCAGACAGTCGTTGCTAAGGTGACCAATGTGGATGAATCGAAGCAGAGGATGCTGCTGTCTCTGCGGCTGTCAGACTGCAGTCTGGGGGATTCGGCCAGCACCAGCTTCCTCCTCCTGTGCCAGTGCCTGGAAGAGCTGCAGGGCATTCGCAGCCTCATGAGCAACCAAG ctctgttggatgtgattctttcctatgtgcttttttctgtatgataccagATCATGAGTGACAGGTCTGTTACTACTCCAGGTGAACATATTGTGGAAGGGCAGACAGTAATTTCAAAAGTGACTAATGTGGATGAAACAAAGGAGAGAATGTTGTTGTCATTCCGACTGACCCACTGCAGTTTGGGTGGC------------GATTTCCTTCTTCTG---TGGTGCCTAGAAGAGATACAGGGCATTAGCAGTCTGATGAGCACCCAAGgtatggtttacccttaggacactagttatcgcctcattgtatacttgacc Alignment from Exonerate_coding2genome ATCATGAGTGACAAGTTCGTAACCACTCCAAGTGAACACTTTGTGGAGGGTCAGACAGTCGTTGCTAAGGTGACCAATGTGGATGAATCGAAGCAGAGGATGCTGCTGTCTCTGCGGCTGTCAGACTGCAGTCTGGGGGATTCGGCCAGCACCAGCTTCCTCCTCCTGTGCCAGTGCCTGGAAGAGCTGCAGGGCATTCGCAGCCTCATGAGCAACCAAG ctctgttggatgtgattctttcctatgtgcttttttctgtatgataccagATCATGAGTGACAGGTCTGTTACTACTCCAGGTGAACATATTGTGGAAGGGCAGACAGTAATTTCAAAAGTGACTAATGTGGATGAAACAAAGGAGAGAATGTTGTTGTCATTCCGACTGACCCACTGCAGTTTGGGTGGC------------GATTTCCTTCTTCTG---TGGTGCCTAGAAGAGATACAGGGCATTAGCAGTCTGATGAGCACCCAAGgtatggtttacccttaggacactagttatcgcctcattgtatacttgacc Alignment from GeneWise ATCATGAGTGACAAGTTCGTAACCACTCCAAGTGAACACTTTGTGGAGGGTCAGACAGTCGTTGCTAAGGTGACCAATGTGGATGAATCGAAGCAGAGGATGCTGCTGTCTCTGCGGCTGTCAGACTGCAGTCTGGGGGATTCGGCCAGCACCAGCTTCCTCCTCCTGTGCCAGTGCCTGGAAGAGCTGCAGGGCATTCGCAGCCTCATGAGCAACCAAG ctctgttggatgtgattctttcctatgtgcttttttctgtatgataccagATCATGAGTGACAGGTCTGTTACTACTCCAGGTGAACATATTGTGGAAGGGCAGACAGTAATTTCAAAAGTGACTAATGTGGATGAAACAAAGGAGAGAATGTTGTTGTCATTCCGACTGACCCACTGCAGTTTGGGTGGCGAT------------TTCCTTCTTCTG---TGGTGCCTAGAAGAGATACAGGGCATTAGCAGTCTGATGAGCACCCAAGgtatggtttacccttaggacactagttatcgcctcattgtatacttgacc #### Pdcd11_ID10126_20 --> 1 - 2 Original Alignment gTTTCTCCCAATAAGTCACCCCAGATTTGTTCTGACCATCCTGGAGCTGAGTGTTCGGCCAag tgcacgtaggtatacattatttagtaacactctgttccatccacctgcagaTTTCTCCCAATTAGCCACCCCAGATTTGTATTGACCATCCTGGAGTTGAGTGTTCGTCCAaggtgaggctttattcttgaggacaagtcaacagctggggtcatctctagtc Alignment from CESAR gTTTCTCCCAATAAGTCACCCCAGATTTGTTCTGACCATCCTGGAGCTGAGTGTTCGGCCAag tgcacgtaggtatacattatttagtaacactctgttccatccacctgcagaTTTCTCCCAATTAGCCACCCCAGATTTGTATTGACCATCCTGGAGTTGAGTGTTCGTCCAaggtgaggctttattcttgaggacaagtcaacagctggggtcatctctagtc Alignment from Spaln_aa2Genome GTTTCTCCCAATAAGTCACCCCAGATTTGTTCTGACCATCCTGGAGCTGAGTGTTCGGCCAAG tgcacgtaggtatacattatttagtaacactctgttccatccacctgcagATTTCTCCCAATTAGCCACCCCAGATTTGTATTGACCATCCTGGAGTTGAGTGTTCGTCCAAGgtgaggctttattcttgaggacaagtcaacagctggggtcatctctagtc Alignment from Spaln_nt2Genome GTTTCTCCCAATAAGTCACCCCAGATTTGTTCTGACCATCCTGGAGCTGAGTGTTCGGCCAAG tgcacgtaggtatacattatttagtaacactctgttccatccacctgcagATTTCTCCCAATTAGCCACCCCAGATTTGTATTGACCATCCTGGAGTTGAGTGTTCGTCCAAGgtgaggctttattcttgaggacaagtcaacagctggggtcatctctagtc Alignment from Pairagon GTTTCTCCCAATAAGTCACCCCAGATTTGTTCTGACCATCCTGGAGCTGAGTGTTCGGCCAAG tgcacgtaggtatacattatttagtaacactctgttccatccacctgcagATTTCTCCCAATTAGCCACCCCAGATTTGTATTGACCATCCTGGAGTTGAGTGTTCGTCCAAGgtgaggctttattcttgaggacaagtcaacagctggggtcatctctagtc Alignment from Exonerate_protein2genome GTTTCTCCCAATAAGTCACCCCAGATTTGTTCTGACCATCCTGGAGCTGAGTGTTCGGCCAAG tgcacgtaggtatacattatttagtaacactctgttccatccacctgcagATTTCTCCCAATTAGCCACCCCAGATTTGTATTGACCATCCTGGAGTTGAGTGTTCGTCCAAGgtgaggctttattcttgaggacaagtcaacagctggggtcatctctagtc Alignment from Exonerate_coding2genome GTTTCTCCCAATAAGTCACCCCAGATTTGTTCTGACCATCCTGGAGCTGAGTGTTCGGCCA tgcacgtaggtatacattatttagtaacactctgttccatccacctgcagATTTCTCCCAATTAGCCACCCCAGATTTGTATTGACCATCCTGGAGTTGAGTGTTCGTCCAaggtgaggctttattcttgaggacaagtcaacagctggggtcatctctagtc Alignment from GeneWise GTTTCTCCCAATAAGTCACCCCAGATTTGTTCTGACCATCCTGGAGCTGAGTGTTCGGCCAAG tgcacgtaggtatacattatttagtaacactctgttccatccacctgcagATTTCTCCCAATTAGCCACCCCAGATTTGTATTGACCATCCTGGAGTTGAGTGTTCGTCCAAGgtgaggctttattcttgaggacaagtcaacagctggggtcatctctagtc #### Pdcd11_ID10135_29 --> 0 - 0 Original Alignment GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctgtgctttaggggaagctcccccgctcacccactgctccctgcagGGTCTAGTAAATAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTAGGGGAGCCAAAGCTGCCGCCCAGGgtaagctttatgggatttactatctttagagcgtagcttgcacatgaagt Alignment from CESAR GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctgtgctttaggggaagctcccccgctcacccactgctccctgcagGGTCTAGTAAATAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTAGGGGAGCCAAAGCTGCCGCCCAGGgtaagctttatgggatttactatctttagagcgtagcttgcacatgaagt Alignment from Spaln_aa2Genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctgtgctttaggggaagctcccccgctcacccactgctccctgcagGGTCTAGTAAATAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTAGGGGAGCCAAAGCTGCCGCCCAGGgtaagctttatgggatttactatctttagagcgtagcttgcacatgaagt Alignment from Spaln_nt2Genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAAG------TGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctgtgctttaggggaagctcccccgctcacccactgctccctgcagGGTCTAGTAAATAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTAGGGGAGCCAAAGCTGCCGCCCAGGgtaagctttatgggatttactatctttagagcgtagcttgcacatgaagt Alignment from Pairagon GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGA------AGTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctgtgctttaggggaagctcccccgctcacccactgctccctgcagGGTCTAGTAAATAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTAGGGGAGCCAAAGCTGCCGCCCAGGgtaagctttatgggatttactatctttagagcgtagcttgcacatgaagt Alignment from Exonerate_protein2genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctgtgctttaggggaagctcccccgctcacccactgctccctgcagGGTCTAGTAAATAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTAGGGGAGCCAAAGCTGCCGCCCAGGgtaagctttatgggatttactatctttagagcgtagcttgcacatgaagt Alignment from Exonerate_coding2genome tgctctgtgctttaggggaagctcccccgctcacccactgctccctgcagggtctagtaaataagaggccaaagaggtctggggctgcagaggaggatgatagtggggtggaagcttcagtatactaccgggaaggagaggatgaggtaggggagccaaagctgccgcccagggtaagctttatgggatttactatctttagagcgtagcttgcacatgaagt Alignment from GeneWise GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctgtgctttaggggaagctcccccgctcacccactgctccctgcagGGTCTAGTAAATAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTAGGGGAGCCAAAGCTGCCGCCCAGGgtaagctttatgggatttactatctttagagcgtagcttgcacatgaagt #### Pdcd11_ID10136_30 --> 0 - 0 Original Alignment GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtttggccagaaatcatcacgatgcctttctgtctccttcagGGGAAGAAGACAAAGTCTACGGAAGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCTCTGGGATGTGGGACTTGATTCTCTAACCCCGTCCTTGCCACTCCGGGAAGAAAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaagtcatctccttagccagtatgactgctaggactacttaaagccaac Alignment from CESAR GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtttggccagaaatcatcacgatgcctttctgtctccttcagGGGAAGAAGACAAAGTCTACGGAAGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCTCTGGGATGTGGGACTTGATTCTCTAACCCCGTCCTTGCCACTCCGGGAAGAAAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaagtcatctccttagccagtatgactgctaggactacttaaagccaac Alignment from Spaln_aa2Genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtttggccagaaatcatcacgatgcctttctgtctccttcagGGGAAGAAGACAAAGTCTACGGAAGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCTCTGGGATGTGGGACTTGATTCTCTAACCCCGTCCTTGCCACTCCGGGAAGAAAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaagtcatctccttagccagtatgactgctaggactacttaaagccaac Alignment from Spaln_nt2Genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtttggccagaaatcatcacgatgcctttctgtctccttcagGGGAAGAAGACAAAGTCTACGGAAGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCTCTGGGATGTGGGACTTGATTCTCTAACCCCGTCCTTGCCACTCCGGGAAGAAAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaagtcatctccttagccagtatgactgctaggactacttaaagccaac Alignment from Pairagon GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtttggccagaaatcatcacgatgcctttctgtctccttcagGGGAAGAAGACAAAGTCTACGGAAGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCTCTGGGATGTGGGACTTGATTCTCTAACCCCGTCCTTGCCACTCCGGGAAGAAAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaagtcatctccttagccagtatgactgctaggactacttaaagccaac Alignment from Exonerate_protein2genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtttggccagaaatcatcacgatgcctttctgtctccttcagGGGAAGAAGACAAAGTCTACGGAAGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCTCTGGGATGTGGGACTTGATTCTCTAACCCCGTCCTTGCCACTCCGGGAAGAAAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaagtcatctccttagccagtatgactgctaggactacttaaagccaac Alignment from Exonerate_coding2genome gtgggctggtttggccagaaatcatcacgatgcctttctgtctccttcaggggaagaagacaaagtctacggaagtgtctcgtctgcacctctcttcaggttttctctgggatgtgggacttgattctctaaccccgtccttgccactccgggaagaaagctcagacagtgaggatgagcagccacaccaggctaaggtaagtcatctccttagccagtatgactgctaggactacttaaagccaac Alignment from GeneWise GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtttggccagaaatcatcacgatgcctttctgtctccttcagGGGAAGAAGACAAAGTCTACGGAAGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCTCTGGGATGTGGGACTTGATTCTCTAACCCCGTCCTTGCCACTCCGGGAAGAAAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaagtcatctccttagccagtatgactgctaggactacttaaagccaac #### Pdcd4_ID11395_2 --> 2 - 1 Original Alignment acCCTGACAATTTAAGCGACTCTCTCTTTTCTGGAGATGAAGAAAATGCTGGCACTGAAGAAATAAAGAATGAAATAAATGGAAATTGGATTTCCGCATCTACTATTAATGAAGCTAGAATCAATGCAAAAGCCAAAAGACGACTGCGGAAAAATTCATCCCGGGACTCTGGCCGAGGAGACTCAGTCAGTGACAATGGAAGTGAAGCGGTTAGAAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGATAGGCGGTCCAGATCTGGGAAAGGAAGGGGGCTGCCAAAGAAAg tatcaaagacaagccaaaaaagtttcataatgtaactctttctcttccagacCCTGATAATTTCAGTGACTCCCTTTTTTCTGGTGATGAAGAAAATGCTGGCACTGAAGAAATCAAAACAGAAATCAATGGAAACTGGCTCTCTGCATCAACCACTAACGAAGCTAGAATCAATGCAAAAGCCAAAAGGTGCTTACGAAAGAATTCATCTCAGGATTCTGGCCATGGAGACGCAGTAAGAGACAACGGAAGTGAGGCACTTAGGAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGAAAGGTGGTCCAGATCCGGGAAAGGTAGGGGGTTACCAAAGAAAggtgagtgagtaaaagattactacccgacttttgaatattaaatgcagcca Alignment from CESAR acCCTGACAATTTAAGCGACTCTCTCTTTTCTGGAGATGAAGAAAATGCTGGCACTGAAGAAATAAAGAATGAAATAAATGGAAATTGGATTTCCGCATCTACTATTAATGAAGCTAGAATCAATGCAAAAGCCAAAAGACGACTGCGGAAAAATTCATCCCGGGACTCTGGCCGAGGAGACTCAGTCAGTGACAATGGAAGTGAAGCGGTTAGAAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGATAGGCGGTCCAGATCTGGGAAAGGAAGGGGGCTGCCAAAGAAAg tatcaaagacaagccaaaaaagtttcataatgtaactctttctcttccagacCCTGATAATTTCAGTGACTCCCTTTTTTCTGGTGATGAAGAAAATGCTGGCACTGAAGAAATCAAAACAGAAATCAATGGAAACTGGCTCTCTGCATCAACCACTAACGAAGCTAGAATCAATGCAAAAGCCAAAAGGTGCTTACGAAAGAATTCATCTCAGGATTCTGGCCATGGAGACGCAGTAAGAGACAACGGAAGTGAGGCACTTAGGAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGAAAGGTGGTCCAGATCCGGGAAAGGTAGGGGGTTACCAAAGAAAggtgagtgagtaaaagattactacccgacttttgaatattaaatgcagcca Alignment from Spaln_aa2Genome ACCCTGACAATTTAAGCGACTCTCTCTTTTCTGGAGATGAAGAAAATGCTGGCACTGAAGAAATAAAGAATGAAATAAATGGAAATTGGATTTCCGCATCTACTATTAATGAAGCTAGAATCAATGCAAAAGCCAAAAGACGACTGCGGAAAAATTCATCCCGGGACTCTGGCCGAGGAGACTCAGTCAGTGACAATGGAAGTGAAGCGGTTAGAAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGATAGGCGGTCCAGATCTGGGAAAGGAAGGGGGCTGCCAAAGAAAG tatcaaagacaagccaaaaaagtttcataatgtaactctttctcttccagACCCTGATAATTTCAGTGACTCCCTTTTTTCTGGTGATGAAGAAAATGCTGGCACTGAAGAAATCAAAACAGAAATCAATGGAAACTGGCTCTCTGCATCAACCACTAACGAAGCTAGAATCAATGCAAAAGCCAAAAGGTGCTTACGAAAGAATTCATCTCAGGATTCTGGCCATGGAGACGCAGTAAGAGACAACGGAAGTGAGGCACTTAGGAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGAAAGGTGGTCCAGATCCGGGAAAGGTAGGGGGTTACCAAAGAAAGgtgagtgagtaaaagattactacccgacttttgaatattaaatgcagcca Alignment from Spaln_nt2Genome ACCCTGACAATTTAAGCGACTCTCTCTTTTCTGGAGATGAAGAAAATGCTGGCACTGAAGAAATAAAGAATGAAATAAATGGAAATTGGATTTCCGCATCTACTATTAATGAAGCTAGAATCAATGCAAAAGCCAAAAGACGACTGCGGAAAAATTCATCCCGGGACTCTGGCCGAGGAGACTCAGTCAGTGACAATGGAAGTGAAGCGGTTAGAAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGATAGGCGGTCCAGATCTGGGAAAGGAAGGGGGCTGCCAAAGAAAG tatcaaagacaagccaaaaaagtttcataatgtaactctttctcttccagACCCTGATAATTTCAGTGACTCCCTTTTTTCTGGTGATGAAGAAAATGCTGGCACTGAAGAAATCAAAACAGAAATCAATGGAAACTGGCTCTCTGCATCAACCACTAACGAAGCTAGAATCAATGCAAAAGCCAAAAGGTGCTTACGAAAGAATTCATCTCAGGATTCTGGCCATGGAGACGCAGTAAGAGACAACGGAAGTGAGGCACTTAGGAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGAAAGGTGGTCCAGATCCGGGAAAGGTAGGGGGTTACCAAAGAAAGgtgagtgagtaaaagattactacccgacttttgaatattaaatgcagcca Alignment from Pairagon ACCCTGACAATTTAAGCGACTCTCTCTTTTCTGGAGATGAAGAAAATGCTGGCACTGAAGAAATAAAGAATGAAATAAATGGAAATTGGATTTCCGCATCTACTATTAATGAAGCTAGAATCAATGCAAAAGCCAAAAGACGACTGCGGAAAAATTCATCCCGGGACTCTGGCCGAGGAGACTCAGTCAGTGACAATGGAAGTGAAGCGGTTAGAAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGATAGGCGGTCCAGATCTGGGAAAGGAAGGGGGCTGCCAAAGAAAG tatcaaagacaagccaaaaaagtttcataatgtaactctttctcttccagACCCTGATAATTTCAGTGACTCCCTTTTTTCTGGTGATGAAGAAAATGCTGGCACTGAAGAAATCAAAACAGAAATCAATGGAAACTGGCTCTCTGCATCAACCACTAACGAAGCTAGAATCAATGCAAAAGCCAAAAGGTGCTTACGAAAGAATTCATCTCAGGATTCTGGCCATGGAGACGCAGTAAGAGACAACGGAAGTGAGGCACTTAGGAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGAAAGGTGGTCCAGATCCGGGAAAGGTAGGGGGTTACCAAAGAAAGgtgagtgagtaaaagattactacccgacttttgaatattaaatgcagcca Alignment from Exonerate_protein2genome ACCCTGACAATTTAAGCGACTCTCTCTTTTCTGGAGATGAAGAAAATGCTGGCACTGAAGAAATAAAGAATGAAATAAATGGAAATTGGATTTCCGCATCTACTATTAATGAAGCTAGAATCAATGCAAAAGCCAAAAGACGACTGCGGAAAAATTCATCCCGGGACTCTGGCCGAGGAGACTCAGTCAGTGACAATGGAAGTGAAGCGGTTAGAAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGATAGGCGGTCCAGATCTGGGAAAGGAAGGGGGCTGCCAAAGAAAG tatcaaagacaagccaaaaaagtttcataatgtaactctttctcttccagACCCTGATAATTTCAGTGACTCCCTTTTTTCTGGTGATGAAGAAAATGCTGGCACTGAAGAAATCAAAACAGAAATCAATGGAAACTGGCTCTCTGCATCAACCACTAACGAAGCTAGAATCAATGCAAAAGCCAAAAGGTGCTTACGAAAGAATTCATCTCAGGATTCTGGCCATGGAGACGCAGTAAGAGACAACGGAAGTGAGGCACTTAGGAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGAAAGGTGGTCCAGATCCGGGAAAGGTAGGGGGTTACCAAAGAAAGgtgagtgagtaaaagattactacccgacttttgaatattaaatgcagcca Alignment from Exonerate_coding2genome ACCCTGACAATTTAAGCGACTCTCTCTTTTCTGGAGATGAAGAAAATGCTGGCACTGAAGAAATAAAGAATGAAATAAATGGAAATTGGATTTCCGCATCTACTATTAATGAAGCTAGAATCAATGCAAAAGCCAAAAGACGACTGCGGAAAAATTCATCCCGGGACTCTGGCCGAGGAGACTCAGTCAGTGACAATGGAAGTGAAGCGGTTAGAAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGATAGGCGGTCCAGATCTGGGAAAGGAAGGGGGCTGCCAAAGAAAG tatcaaagacaagccaaaaaagtttcataatgtaactctttctcttccagACCCTGATAATTTCAGTGACTCCCTTTTTTCTGGTGATGAAGAAAATGCTGGCACTGAAGAAATCAAAACAGAAATCAATGGAAACTGGCTCTCTGCATCAACCACTAACGAAGCTAGAATCAATGCAAAAGCCAAAAGGTGCTTACGAAAGAATTCATCTCAGGATTCTGGCCATGGAGACGCAGTAAGAGACAACGGAAGTGAGGCACTTAGGAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGAAAGGTGGTCCAGATCCGGGAAAGGTAGGGGGTTACCAAAGAAAGgtgagtgagtaaaagattactacccgacttttgaatattaaatgcagcca Alignment from GeneWise ACCCTGACAATTTAAGCGACTCTCTCTTTTCTGGAGATGAAGAAAATGCTGGCACTGAAGAAATAAAGAATGAAATAAATGGAAATTGGATTTCCGCATCTACTATTAATGAAGCTAGAATCAATGCAAAAGCCAAAAGACGACTGCGGAAAAATTCATCCCGGGACTCTGGCCGAGGAGACTCAGTCAGTGACAATGGAAGTGAAGCGGTTAGAAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGATAGGCGGTCCAGATCTGGGAAAGGAAGGGGGCTGCCAAAGAAAG tatcaaagacaagccaaaaaagtttcataatgtaactctttctcttccagACCCTGATAATTTCAGTGACTCCCTTTTTTCTGGTGATGAAGAAAATGCTGGCACTGAAGAAATCAAAACAGAAATCAATGGAAACTGGCTCTCTGCATCAACCACTAACGAAGCTAGAATCAATGCAAAAGCCAAAAGGTGCTTACGAAAGAATTCATCTCAGGATTCTGGCCATGGAGACGCAGTAAGAGACAACGGAAGTGAGGCACTTAGGAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGAAAGGTGGTCCAGATCCGGGAAAGGTAGGGGGTTACCAAAGAAAGgtgagtgagtaaaagattactacccgacttttgaatattaaatgcagcca #### Pdcd4_ID11398_5 --> 0 - 0 Original Alignment GAGATGTTAAGAGACTTAAACCTTGGGGAGATGAAGAGTGGCGTGCCGGTGTTGGCAGTGTCCTTAGCCTTGGAGGGGAAGGCCAGCCACCGGGAGATGACATCCAAGCTGCTTTCTGACCTTTGCGGGACGGTGATGAGCACAAATGACGTGGAAAAGTCATTTGACAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACTCCTAGGGCACCGCAG gcatgccaaaagtttacttttagcgtcaaccactctgcctctgtacccagGAGATGTTAAGAGACTTAAACCTTGGTGAGATGAAAAGCGGTGTACCAGTATTGGCAGTATCTTTAGCTTTGGAAGGGAAGGCCAGCCACCAGGAGATGACAACCAAGCTGCTTTCTGACCTTTGTGGGACAGTGATGAGCACAAATGATGTTGAAAAGTCATTTGATAAGTTGTTGAAGGATCTCCCTGAGCTAGCCTTGGACACCCCTAGGGCACCCCAAgtaagaactttatccctttcagcatttatacgtgggagacatacaagagg Alignment from CESAR GAGATGTTAAGAGACTTAAACCTTGGGGAGATGAAGAGTGGCGTGCCGGTGTTGGCAGTGTCCTTAGCCTTGGAGGGGAAGGCCAGCCACCGGGAGATGACATCCAAGCTGCTTTCTGACCTTTGCGGGACGGTGATGAGCACAAATGACGTGGAAAAGTCATTTGACAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACTCCTAGGGCACCGCAG gcatgccaaaagtttacttttagcgtcaaccactctgcctctgtacccagGAGATGTTAAGAGACTTAAACCTTGGTGAGATGAAAAGCGGTGTACCAGTATTGGCAGTATCTTTAGCTTTGGAAGGGAAGGCCAGCCACCAGGAGATGACAACCAAGCTGCTTTCTGACCTTTGTGGGACAGTGATGAGCACAAATGATGTTGAAAAGTCATTTGATAAGTTGTTGAAGGATCTCCCTGAGCTAGCCTTGGACACCCCTAGGGCACCCCAAgtaagaactttatccctttcagcatttatacgtgggagacatacaagagg Alignment from Spaln_aa2Genome GAGATGTTAAGAGACTTAAACCTTGGGGAGATGAAGAGTGGCGTGCCGGTGTTGGCAGTGTCCTTAGCCTTGGAGGGGAAGGCCAGCCACCGGGAGATGACATCCAAGCTGCTTTCTGACCTTTGCGGGACGGTGATGAGCACAAATGACGTGGAAAAGTCATTTGACAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACTCCTAGGGCACCGCAG gcatgccaaaagtttacttttagcgtcaaccactctgcctctgtacccagGAGATGTTAAGAGACTTAAACCTTGGTGAGATGAAAAGCGGTGTACCAGTATTGGCAGTATCTTTAGCTTTGGAAGGGAAGGCCAGCCACCAGGAGATGACAACCAAGCTGCTTTCTGACCTTTGTGGGACAGTGATGAGCACAAATGATGTTGAAAAGTCATTTGATAAGTTGTTGAAGGATCTCCCTGAGCTAGCCTTGGACACCCCTAGGGCACCCCAAgtaagaactttatccctttcagcatttatacgtgggagacatacaagagg Alignment from Spaln_nt2Genome GAGATGTTAAGAGACTTAAACCTTGGGGAGATGAAGAGTGGCGTGCCGGTGTTGGCAGTGTCCTTAGCCTTGGAGGGGAAGGCCAGCCACCGGGAGATGACATCCAAGCTGCTTTCTGACCTTTGCGGGACGGTGATGAGCACAAATGACGTGGAAAAGTCATTTGACAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACTCCTAGGGCACCGCAG gcatgccaaaagtttacttttagcgtcaaccactctgcctctgtacccagGAGATGTTAAGAGACTTAAACCTTGGTGAGATGAAAAGCGGTGTACCAGTATTGGCAGTATCTTTAGCTTTGGAAGGGAAGGCCAGCCACCAGGAGATGACAACCAAGCTGCTTTCTGACCTTTGTGGGACAGTGATGAGCACAAATGATGTTGAAAAGTCATTTGATAAGTTGTTGAAGGATCTCCCTGAGCTAGCCTTGGACACCCCTAGGGCACCCCAAgtaagaactttatccctttcagcatttatacgtgggagacatacaagagg Alignment from Pairagon GAGATGTTAAGAGACTTAAACCTTGGGGAGATGAAGAGTGGCGTGCCGGTGTTGGCAGTGTCCTTAGCCTTGGAGGGGAAGGCCAGCCACCGGGAGATGACATCCAAGCTGCTTTCTGACCTTTGCGGGACGGTGATGAGCACAAATGACGTGGAAAAGTCATTTGACAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACTCCTAGGGCACCGCAG gcatgccaaaagtttacttttagcgtcaaccactctgcctctgtacccagGAGATGTTAAGAGACTTAAACCTTGGTGAGATGAAAAGCGGTGTACCAGTATTGGCAGTATCTTTAGCTTTGGAAGGGAAGGCCAGCCACCAGGAGATGACAACCAAGCTGCTTTCTGACCTTTGTGGGACAGTGATGAGCACAAATGATGTTGAAAAGTCATTTGATAAGTTGTTGAAGGATCTCCCTGAGCTAGCCTTGGACACCCCTAGGGCACCCCAAgtaagaactttatccctttcagcatttatacgtgggagacatacaagagg Alignment from Exonerate_protein2genome GAGATGTTAAGAGACTTAAACCTTGGGGAGATGAAGAGTGGCGTGCCGGTGTTGGCAGTGTCCTTAGCCTTGGAGGGGAAGGCCAGCCACCGGGAGATGACATCCAAGCTGCTTTCTGACCTTTGCGGGACGGTGATGAGCACAAATGACGTGGAAAAGTCATTTGACAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACTCCTAGGGCACCGCAG gcatgccaaaagtttacttttagcgtcaaccactctgcctctgtacccagGAGATGTTAAGAGACTTAAACCTTGGTGAGATGAAAAGCGGTGTACCAGTATTGGCAGTATCTTTAGCTTTGGAAGGGAAGGCCAGCCACCAGGAGATGACAACCAAGCTGCTTTCTGACCTTTGTGGGACAGTGATGAGCACAAATGATGTTGAAAAGTCATTTGATAAGTTGTTGAAGGATCTCCCTGAGCTAGCCTTGGACACCCCTAGGGCACCCCAAgtaagaactttatccctttcagcatttatacgtgggagacatacaagagg Alignment from Exonerate_coding2genome GAGATGTTAAGAGACTTAAACCTTGGGGAGATGAAGAGTGGCGTGCCGGTGTTGGCAGTGTCCTTAGCCTTGGAGGGGAAGGCCAGCCACCGGGAGATGACATCCAAGCTGCTTTCTGACCTTTGCGGGACGGTGATGAGCACAAATGACGTGGAAAAGTCATTTGACAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACTCCTAGGGCACCGCAG gcatgccaaaagtttacttttagcgtcaaccactctgcctctgtacccagGAGATGTTAAGAGACTTAAACCTTGGTGAGATGAAAAGCGGTGTACCAGTATTGGCAGTATCTTTAGCTTTGGAAGGGAAGGCCAGCCACCAGGAGATGACAACCAAGCTGCTTTCTGACCTTTGTGGGACAGTGATGAGCACAAATGATGTTGAAAAGTCATTTGATAAGTTGTTGAAGGATCTCCCTGAGCTAGCCTTGGACACCCCTAGGGCACCCCAAgtaagaactttatccctttcagcatttatacgtgggagacatacaagagg Alignment from GeneWise GAGATGTTAAGAGACTTAAACCTTGGGGAGATGAAGAGTGGCGTGCCGGTGTTGGCAGTGTCCTTAGCCTTGGAGGGGAAGGCCAGCCACCGGGAGATGACATCCAAGCTGCTTTCTGACCTTTGCGGGACGGTGATGAGCACAAATGACGTGGAAAAGTCATTTGACAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACTCCTAGGGCACCGCAG gcatgccaaaagtttacttttagcgtcaaccactctgcctctgtacccagGAGATGTTAAGAGACTTAAACCTTGGTGAGATGAAAAGCGGTGTACCAGTATTGGCAGTATCTTTAGCTTTGGAAGGGAAGGCCAGCCACCAGGAGATGACAACCAAGCTGCTTTCTGACCTTTGTGGGACAGTGATGAGCACAAATGATGTTGAAAAGTCATTTGATAAGTTGTTGAAGGATCTCCCTGAGCTAGCCTTGGACACCCCTAGGGCACCCCAAgtaagaactttatccctttcagcatttatacgtgggagacatacaagagg #### Pdcd4_ID11400_7 --> 1 - 0 Original Alignment aGCTGCTCTGGATAAGGCTACTGTGCTCCTGAGTATGTCCAAAGGCGGGAAGCGGAAAGACAGTGTGTGGGGATCTGGAGGCGGGCAACAGCCTGTCAATCACCTTGTTAAAGAG atccaagcacaggcaaccacatagattagaccatgacttcactctcatagaGCAGCTTTAGATGAAGCTAATGTACTCCTCAGTATGTCTAAAGGTGGGAAACAGAAGGACAGTGTATGGGGATCTGGAGGTGGGCAACAATCGATCAATCACCTGGTTAAAGAGgtaagaaacctttattctaagtgggtatgtctattctacatgtctattgc Alignment from CESAR aGCTGCTCTGGATAAGGCTACTGTGCTCCTGAGTATGTCCAAAGGCGGGAAGCGGAAAGACAGTGTGTGGGGATCTGGAGGCGGGCAACAGCCTGTCAATCACCTTGTTAAAGAG atccaagcacaggcaaccacatagattagaccatgacttcactctcatagaGCAGCTTTAGATGAAGCTAATGTACTCCTCAGTATGTCTAAAGGTGGGAAACAGAAGGACAGTGTATGGGGATCTGGAGGTGGGCAACAATCGATCAATCACCTGGTTAAAGAGgtaagaaacctttattctaagtgggtatgtctattctacatgtctattgc Alignment from Spaln_aa2Genome AGCTGCTCTGGATAAGGCTACTGTGCTCCTGAGTATGTCCAAAGGCGGGAAGCGGAAAGACAGTGTGTGGGGATCTGGAGGCGGGCAACAGCCTGTCAATCACCTTGTTAAAGAG atccaagcacaggcaaccacatagattagaccatgacttcactctcatagAGCAGCTTTAGATGAAGCTAATGTACTCCTCAGTATGTCTAAAGGTGGGAAACAGAAGGACAGTGTATGGGGATCTGGAGGTGGGCAACAATCGATCAATCACCTGGTTAAAGAGgtaagaaacctttattctaagtgggtatgtctattctacatgtctattgc Alignment from Spaln_nt2Genome AGCTGCTCTGGATAAGGCTACTGTGCTCCTGAGTATGTCCAAAGGCGGGAAGCGGAAAGACAGTGTGTGGGGATCTGGAGGCGGGCAACAGCCTGTCAATCACCTTGTTAAAGAG atccaagcacaggcaaccacatagattagaccatgacttcactctcatagAGCAGCTTTAGATGAAGCTAATGTACTCCTCAGTATGTCTAAAGGTGGGAAACAGAAGGACAGTGTATGGGGATCTGGAGGTGGGCAACAATCGATCAATCACCTGGTTAAAGAGgtaagaaacctttattctaagtgggtatgtctattctacatgtctattgc Alignment from Pairagon AGCTGCTCTGGATAAGGCTACTGTGCTCCTGAGTATGTCCAAAGGCGGGAAGCGGAAAGACAGTGTGTGGGGATCTGGAGGCGGGCAACAGCCTGTCAATCACCTTGTTAAAGAG atccaagcacaggcaaccacatagattagaccatgacttcactctcatagAGCAGCTTTAGATGAAGCTAATGTACTCCTCAGTATGTCTAAAGGTGGGAAACAGAAGGACAGTGTATGGGGATCTGGAGGTGGGCAACAATCGATCAATCACCTGGTTAAAGAGgtaagaaacctttattctaagtgggtatgtctattctacatgtctattgc Alignment from Exonerate_protein2genome AGCTGCTCTGGATAAGGCTACTGTGCTCCTGAGTATGTCCAAAGGCGGGAAGCGGAAAGACAGTGTGTGGGGATCTGGAGGCGGGCAACAGCCTGTCAATCACCTTGTTAAAGAG atccaagcacaggcaaccacatagattagaccatgacttcactctcatagAGCAGCTTTAGATGAAGCTAATGTACTCCTCAGTATGTCTAAAGGTGGGAAACAGAAGGACAGTGTATGGGGATCTGGAGGTGGGCAACAATCGATCAATCACCTGGTTAAAGAGgtaagaaacctttattctaagtgggtatgtctattctacatgtctattgc Alignment from Exonerate_coding2genome AGCTGCTCTGGATAAGGCTACTGTGCTCCTGAGTATGTCCAAAGGCGGGAAGCGGAAAGACAGTGTGTGGGGATCTGGAGGCGGGCAACAGCCTGTCAATCACCTTGTTAAAGAG atccaagcacaggcaaccacatagattagaccatgacttcactctcatagAGCAGCTTTAGATGAAGCTAATGTACTCCTCAGTATGTCTAAAGGTGGGAAACAGAAGGACAGTGTATGGGGATCTGGAGGTGGGCAACAATCGATCAATCACCTGGTTAAAGAGgtaagaaacctttattctaagtgggtatgtctattctacatgtctattgc Alignment from GeneWise AGCTGCTCTGGATAAGGCTACTGTGCTCCTGAGTATGTCCAAAGGCGGGAAGCGGAAAGACAGTGTGTGGGGATCTGGAGGCGGGCAACAGCCTGTCAATCACCTTGTTAAAGAG atccaagcacaggcaaccacatagattagaccatgacttcactctcatagAGCAGCTTTAGATGAAGCTAATGTACTCCTCAGTATGTCTAAAGGTGGGAAACAGAAGGACAGTGTATGGGGATCTGGAGGTGGGCAACAATCGATCAATCACCTGGTTAAAGAGgtaagaaacctttattctaagtgggtatgtctattctacatgtctattgc #### Pdcd4_ID11402_9 --> 0 - 0 Original Alignment GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA tgtgagttgttcaccatgggttgattcaccttctggatgctcgtttaaagGCCATTGTGATGGTGTTAGAGTCAACTGGGGAGAGTGCGTTCAAGATGATCTTAGATTTATTTAAGTCTCTGTGGAAGTCTTCTACAATTACTATAGACCAAATGAAACGAgtgaggacggagagataaagatcttgcacgagatcctgcatggctctatt Alignment from CESAR GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA tgtgagttgttcaccatgggttgattcaccttctggatgctcgtttaaagGCCATTGTGATGGTGTTAGAGTCAACTGGGGAGAGTGCGTTCAAGATGATCTTAGATTTATTTAAGTCTCTGTGGAAGTCTTCTACAATTACTATAGACCAAATGAAACGAgtgaggacggagagataaagatcttgcacgagatcctgcatggctctatt Alignment from Spaln_aa2Genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA tgtgagttgttcaccatgggttgattcaccttctggatgctcgtttaaagGCCATTGTGATGGTGTTAGAGTCAACTGGGGAGAGTGCGTTCAAGATGATCTTAGATTTATTTAAGTCTCTGTGGAAGTCTTCTACAATTACTATAGACCAAATGAAACGAgtgaggacggagagataaagatcttgcacgagatcctgcatggctctatt Alignment from Spaln_nt2Genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA tgtgagttgttcaccatgggttgattcaccttctggatgctcgtttaaagGCCATTGTGATGGTGTTAGAGTCAACTGGGGAGAGTGCGTTCAAGATGATCTTAGATTTATTTAAGTCTCTGTGGAAGTCTTCTACAATTACTATAGACCAAATGAAACGAgtgaggacggagagataaagatcttgcacgagatcctgcatggctctatt Alignment from Pairagon GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA tgtgagttgttcaccatgggttgattcaccttctggatgctcgtttaaagGCCATTGTGATGGTGTTAGAGTCAACTGGGGAGAGTGCGTTCAAGATGATCTTAGATTTATTTAAGTCTCTGTGGAAGTCTTCTACAATTACTATAGACCAAATGAAACGAgtgaggacggagagataaagatcttgcacgagatcctgcatggctctatt Alignment from Exonerate_protein2genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA tgtgagttgttcaccatgggttgattcaccttctggatgctcgtttaaagGCCATTGTGATGGTGTTAGAGTCAACTGGGGAGAGTGCGTTCAAGATGATCTTAGATTTATTTAAGTCTCTGTGGAAGTCTTCTACAATTACTATAGACCAAATGAAACGAgtgaggacggagagataaagatcttgcacgagatcctgcatggctctatt Alignment from Exonerate_coding2genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA tgtgagttgttcaccatgggttgattcaccttctggatgctcgtttaaagGCCATTGTGATGGTGTTAGAGTCAACTGGGGAGAGTGCGTTCAAGATGATCTTAGATTTATTTAAGTCTCTGTGGAAGTCTTCTACAATTACTATAGACCAAATGAAACGAgtgaggacggagagataaagatcttgcacgagatcctgcatggctctatt Alignment from GeneWise GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA tgtgagttgttcaccatgggttgattcaccttctggatgctcgtttaaagGCCATTGTGATGGTGTTAGAGTCAACTGGGGAGAGTGCGTTCAAGATGATCTTAGATTTATTTAAGTCTCTGTGGAAGTCTTCTACAATTACTATAGACCAAATGAAACGAgtgaggacggagagataaagatcttgcacgagatcctgcatggctctatt #### Pde6c_ID7533_3 --> 0 - 0 Original Alignment GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagccatgggttcaccactataaatctccttgtactgtatcctagGTCATCTCAAAATACCTCAGCTTTGTTGCTGTTGCACTAAGGCTGAAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGCGGAGTCAAgtaagctaatactacaagaagtctgccctttccacacctacacattgtca Alignment from CESAR GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagccatgggttcaccactataaatctccttgtactgtatcctagGTCATCTCAAAATACCTCAGCTTTGTTGCTGTTGCACTAAGGCTGAAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGCGGAGTCAAgtaagctaatactacaagaagtctgccctttccacacctacacattgtca Alignment from Spaln_aa2Genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagccatgggttcaccactataaatctccttgtactgtatcctagGTCATCTCAAAATACCTCAGCTTTGTTGCTGTTGCACTAAGGCTGAAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGCGGAGTCAAgtaagctaatactacaagaagtctgccctttccacacctacacattgtca Alignment from Spaln_nt2Genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagccatgggttcaccactataaatctccttgtactgtatcctagGTCATCTCAAAATACCTCAGCTTTGTTGCTGTTGCACTAAGGCTGAAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGCGGAGTCAAgtaagctaatactacaagaagtctgccctttccacacctacacattgtca Alignment from Pairagon GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagccatgggttcaccactataaatctccttgtactgtatcctagGTCATCTCAAAATACCTCAGCTTTGTTGCTGTTGCACTAAGGCTGAAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGCGGAGTCAAgtaagctaatactacaagaagtctgccctttccacacctacacattgtca Alignment from Exonerate_protein2genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagccatgggttcaccactataaatctccttgtactgtatcctagGTCATCTCAAAATACCTCAGCTTTGTTGCTGTTGCACTAAGGCTGAAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGCGGAGTCAAgtaagctaatactacaagaagtctgccctttccacacctacacattgtca Alignment from Exonerate_coding2genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagccatgggttcaccactataaatctccttgtactgtatcctagGTCATCTCAAAATACCTCAGCTTTGTTGCTGTTGCACTAAGGCTGAAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGCGGAGTCAAgtaagctaatactacaagaagtctgccctttccacacctacacattgtca Alignment from GeneWise GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagccatgggttcaccactataaatctccttgtactgtatcctagGTCATCTCAAAATACCTCAGCTTTGTTGCTGTTGCACTAAGGCTGAAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGCGGAGTCAAgtaagctaatactacaagaagtctgccctttccacacctacacattgtca #### Pde6c_ID7535_5 --> 0 - 0 Original Alignment GAATTTTACGATGAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTTATAAAGGACCAAAGACTCCAGATGGCAGG tagtatggagttcggcctgattgctaatcagctgcccttttctctttcagGAATTTTATGACAAGTGGCCAATCAAGGTTGGAGAAGTTGAGCCATATAAAGGACCCAAGACTTCGGATGGCCGGgtgagtgttttggatggccaggttaatgtgttgtacacggtgactaaagt Alignment from CESAR GAATTTTACGATGAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTTATAAAGGACCAAAGACTCCAGATGGCAGG tagtatggagttcggcctgattgctaatcagctgcccttttctctttcagGAATTTTATGACAAGTGGCCAATCAAGGTTGGAGAAGTTGAGCCATATAAAGGACCCAAGACTTCGGATGGCCGGgtgagtgttttggatggccaggttaatgtgttgtacacggtgactaaagt Alignment from Spaln_aa2Genome GAATTTTACGATGAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTTATAAAGGACCAAAGACTCCAGATGGCAGG tagtatggagttcggcctgattgctaatcagctgcccttttctctttcagGAATTTTATGACAAGTGGCCAATCAAGGTTGGAGAAGTTGAGCCATATAAAGGACCCAAGACTTCGGATGGCCGGgtgagtgttttggatggccaggttaatgtgttgtacacggtgactaaagt Alignment from Spaln_nt2Genome GAATTTTACGATGAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTTATAAAGGACCAAAGACTCCAGATGGCAGG tagtatggagttcggcctgattgctaatcagctgcccttttctctttcagGAATTTTATGACAAGTGGCCAATCAAGGTTGGAGAAGTTGAGCCATATAAAGGACCCAAGACTTCGGATGGCCGGgtgagtgttttggatggccaggttaatgtgttgtacacggtgactaaagt Alignment from Pairagon GAATTTTACGATGAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTTATAAAGGACCAAAGACTCCAGATGGCAGG tagtatggagttcggcctgattgctaatcagctgcccttttctctttcagGAATTTTATGACAAGTGGCCAATCAAGGTTGGAGAAGTTGAGCCATATAAAGGACCCAAGACTTCGGATGGCCGGgtgagtgttttggatggccaggttaatgtgttgtacacggtgactaaagt Alignment from Exonerate_protein2genome GAATTTTACGATGAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTTATAAAGGACCAAAGACTCCAGATGGCAGG tagtatggagttcggcctgattgctaatcagctgcccttttctctttcagGAATTTTATGACAAGTGGCCAATCAAGGTTGGAGAAGTTGAGCCATATAAAGGACCCAAGACTTCGGATGGCCGGgtgagtgttttggatggccaggttaatgtgttgtacacggtgactaaagt Alignment from Exonerate_coding2genome GAATTTTACGATGAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTTATAAAGGACCAAAGACTCCAGATGGCAGG tagtatggagttcggcctgattgctaatcagctgcccttttctctttcagGAATTTTATGACAAGTGGCCAATCAAGGTTGGAGAAGTTGAGCCATATAAAGGACCCAAGACTTCGGATGGCCGGgtgagtgttttggatggccaggttaatgtgttgtacacggtgactaaagt Alignment from GeneWise GAATTTTACGATGAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTTATAAAGGACCAAAGACTCCAGATGGCAGG tagtatggagttcggcctgattgctaatcagctgcccttttctctttcagGAATTTTATGACAAGTGGCCAATCAAGGTTGGAGAAGTTGAGCCATATAAAGGACCCAAGACTTCGGATGGCCGGgtgagtgttttggatggccaggttaatgtgttgtacacggtgactaaagt #### Pde6c_ID7537_7 --> 1 - 0 Original Alignment gTCACCTCCAGCAGACCACTGGACGCTTGTTAGTGGATTGCCAACATACGTTGCAGAAAATGGATTT cttcccatgccacaatgacataaatatgcctttctttgttccactcaaagtTCGCCACCACCTGACCACTGGACCCTCATTAGTGGTTTGCCATCCTATGTTGCGGAAAACGGGTTTgtgagtttagccaaacctaaataataataaactgcagatttaacacttcc Alignment from CESAR gTCACCTCCAGCAGACCACTGGACGCTTGTTAGTGGATTGCCAACATACGTTGCAGAAAATGGATTT cttcccatgccacaatgacataaatatgcctttctttgttccactcaaagtTCGCCACCACCTGACCACTGGACCCTCATTAGTGGTTTGCCATCCTATGTTGCGGAAAACGGGTTTgtgagtttagccaaacctaaataataataaactgcagatttaacacttcc Alignment from Spaln_aa2Genome GTCACCTCCAGCAGACCACTGGACGCTTGTTAGTGGATTGCCAACATACGTTGCAGAAAATGGATTT cttcccatgccacaatgacataaatatgcctttctttgttccactcaaagTTCGCCACCACCTGACCACTGGACCCTCATTAGTGGTTTGCCATCCTATGTTGCGGAAAACGGGTTTgtgagtttagccaaacctaaataataataaactgcagatttaacacttcc Alignment from Spaln_nt2Genome GTCACCTCCAGCAGACCACTGGACGCTTGTTAGTGGATTGCCAACATACGTTGCAGAAAATGGATTT cttcccatgccacaatgacataaatatgcctttctttgttccactcaaagTTCGCCACCACCTGACCACTGGACCCTCATTAGTGGTTTGCCATCCTATGTTGCGGAAAACGGGTTTgtgagtttagccaaacctaaataataataaactgcagatttaacacttcc Alignment from Pairagon GTCACCTCCAGCAGACCACTGGACGCTTGTTAGTGGATTGCCAACATACGTTGCAGAAAATGGATTT cttcccatgccacaatgacataaatatgcctttctttgttccactcaaagTTCGCCACCACCTGACCACTGGACCCTCATTAGTGGTTTGCCATCCTATGTTGCGGAAAACGGGTTTgtgagtttagccaaacctaaataataataaactgcagatttaacacttcc Alignment from Exonerate_protein2genome GTCACCTCCAGCAGACCACTGGACGCTTGTTAGTGGATTGCCAACATACGTTGCAGAAAATGGATTT cttcccatgccacaatgacataaatatgcctttctttgttccactcaaagTTCGCCACCACCTGACCACTGGACCCTCATTAGTGGTTTGCCATCCTATGTTGCGGAAAACGGGTTTgtgagtttagccaaacctaaataataataaactgcagatttaacacttcc Alignment from Exonerate_coding2genome GTCACCTCCAGCAGACCACTGGACGCTTGTTAGTGGATTGCCAACATACGTTGCAGAAAATGGATTT cttcccatgccacaatgacataaatatgcctttctttgttccactcaaagTTCGCCACCACCTGACCACTGGACCCTCATTAGTGGTTTGCCATCCTATGTTGCGGAAAACGGGTTTgtgagtttagccaaacctaaataataataaactgcagatttaacacttcc Alignment from GeneWise GTCACCTCCAGCAGACCACTGGACGCTTGTTAGTGGATTGCCAACATACGTTGCAGAAAATGGATTT cttcccatgccacaatgacataaatatgcctttctttgttccactcaaagTTCGCCACCACCTGACCACTGGACCCTCATTAGTGGTTTGCCATCCTATGTTGCGGAAAACGGGTTTgtgagtttagccaaacctaaataataataaactgcagatttaacacttcc #### Pde6c_ID7539_9 --> 0 - 0 Original Alignment AAAGGACCGGTAGATGAGACTGGCTGGGTCATTAAAAATGTCTTGTCCCTGCCTATTGTCAACAAGAAAGAAGACATCGTGGGTGTAGCTACGTTTTACAACCGGAAGGATGGGAAACCCTTTGATGAGCATGATGAACATATCACTGAG atttaatggtaatggccctaagtaatgctgatgttactctcttttaaaagAAAGGTTCAGTGGATGAGACAGGCTGGGTCATTAAAAATGTTTTGTCACTACCTATTGTCAATAAGAAAGAAGACATTGTGGGTGTAGCTTCATTTTACAACCGGAAAGATGGCAAGCCTTTTGACGAGCATGATGAGCATATCACTGAGgtacgtgaggcaaagcgggtgtggctgtgcaaatcataaagcatctgagc Alignment from CESAR AAAGGACCGGTAGATGAGACTGGCTGGGTCATTAAAAATGTCTTGTCCCTGCCTATTGTCAACAAGAAAGAAGACATCGTGGGTGTAGCTACGTTTTACAACCGGAAGGATGGGAAACCCTTTGATGAGCATGATGAACATATCACTGAG atttaatggtaatggccctaagtaatgctgatgttactctcttttaaaagAAAGGTTCAGTGGATGAGACAGGCTGGGTCATTAAAAATGTTTTGTCACTACCTATTGTCAATAAGAAAGAAGACATTGTGGGTGTAGCTTCATTTTACAACCGGAAAGATGGCAAGCCTTTTGACGAGCATGATGAGCATATCACTGAGgtacgtgaggcaaagcgggtgtggctgtgcaaatcataaagcatctgagc Alignment from Spaln_aa2Genome AAAGGACCGGTAGATGAGACTGGCTGGGTCATTAAAAATGTCTTGTCCCTGCCTATTGTCAACAAGAAAGAAGACATCGTGGGTGTAGCTACGTTTTACAACCGGAAGGATGGGAAACCCTTTGATGAGCATGATGAACATATCACTGAG atttaatggtaatggccctaagtaatgctgatgttactctcttttaaaagAAAGGTTCAGTGGATGAGACAGGCTGGGTCATTAAAAATGTTTTGTCACTACCTATTGTCAATAAGAAAGAAGACATTGTGGGTGTAGCTTCATTTTACAACCGGAAAGATGGCAAGCCTTTTGACGAGCATGATGAGCATATCACTGAGgtacgtgaggcaaagcgggtgtggctgtgcaaatcataaagcatctgagc Alignment from Spaln_nt2Genome AAAGGACCGGTAGATGAGACTGGCTGGGTCATTAAAAATGTCTTGTCCCTGCCTATTGTCAACAAGAAAGAAGACATCGTGGGTGTAGCTACGTTTTACAACCGGAAGGATGGGAAACCCTTTGATGAGCATGATGAACATATCACTGAG atttaatggtaatggccctaagtaatgctgatgttactctcttttaaaagAAAGGTTCAGTGGATGAGACAGGCTGGGTCATTAAAAATGTTTTGTCACTACCTATTGTCAATAAGAAAGAAGACATTGTGGGTGTAGCTTCATTTTACAACCGGAAAGATGGCAAGCCTTTTGACGAGCATGATGAGCATATCACTGAGgtacgtgaggcaaagcgggtgtggctgtgcaaatcataaagcatctgagc Alignment from Pairagon AAAGGACCGGTAGATGAGACTGGCTGGGTCATTAAAAATGTCTTGTCCCTGCCTATTGTCAACAAGAAAGAAGACATCGTGGGTGTAGCTACGTTTTACAACCGGAAGGATGGGAAACCCTTTGATGAGCATGATGAACATATCACTGAG atttaatggtaatggccctaagtaatgctgatgttactctcttttaaaagAAAGGTTCAGTGGATGAGACAGGCTGGGTCATTAAAAATGTTTTGTCACTACCTATTGTCAATAAGAAAGAAGACATTGTGGGTGTAGCTTCATTTTACAACCGGAAAGATGGCAAGCCTTTTGACGAGCATGATGAGCATATCACTGAGgtacgtgaggcaaagcgggtgtggctgtgcaaatcataaagcatctgagc Alignment from Exonerate_protein2genome AAAGGACCGGTAGATGAGACTGGCTGGGTCATTAAAAATGTCTTGTCCCTGCCTATTGTCAACAAGAAAGAAGACATCGTGGGTGTAGCTACGTTTTACAACCGGAAGGATGGGAAACCCTTTGATGAGCATGATGAACATATCACTGAG atttaatggtaatggccctaagtaatgctgatgttactctcttttaaaagAAAGGTTCAGTGGATGAGACAGGCTGGGTCATTAAAAATGTTTTGTCACTACCTATTGTCAATAAGAAAGAAGACATTGTGGGTGTAGCTTCATTTTACAACCGGAAAGATGGCAAGCCTTTTGACGAGCATGATGAGCATATCACTGAGgtacgtgaggcaaagcgggtgtggctgtgcaaatcataaagcatctgagc Alignment from Exonerate_coding2genome AAAGGACCGGTAGATGAGACTGGCTGGGTCATTAAAAATGTCTTGTCCCTGCCTATTGTCAACAAGAAAGAAGACATCGTGGGTGTAGCTACGTTTTACAACCGGAAGGATGGGAAACCCTTTGATGAGCATGATGAACATATCACTGAG atttaatggtaatggccctaagtaatgctgatgttactctcttttaaaagAAAGGTTCAGTGGATGAGACAGGCTGGGTCATTAAAAATGTTTTGTCACTACCTATTGTCAATAAGAAAGAAGACATTGTGGGTGTAGCTTCATTTTACAACCGGAAAGATGGCAAGCCTTTTGACGAGCATGATGAGCATATCACTGAGgtacgtgaggcaaagcgggtgtggctgtgcaaatcataaagcatctgagc Alignment from GeneWise AAAGGACCGGTAGATGAGACTGGCTGGGTCATTAAAAATGTCTTGTCCCTGCCTATTGTCAACAAGAAAGAAGACATCGTGGGTGTAGCTACGTTTTACAACCGGAAGGATGGGAAACCCTTTGATGAGCATGATGAACATATCACTGAG atttaatggtaatggccctaagtaatgctgatgttactctcttttaaaagAAAGGTTCAGTGGATGAGACAGGCTGGGTCATTAAAAATGTTTTGTCACTACCTATTGTCAATAAGAAAGAAGACATTGTGGGTGTAGCTTCATTTTACAACCGGAAAGATGGCAAGCCTTTTGACGAGCATGATGAGCATATCACTGAGgtacgtgaggcaaagcgggtgtggctgtgcaaatcataaagcatctgagc #### Pga5_ID2970_8 --> 0 - 0 Original Alignment TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggcggcccactctaggcctcctgctaattttagttttcttttctgcagTACTTTCTAAAGTGTGAT---GTTAACTGCTTGCCAGATATTGTA---------------TTTACATACCCAGTGCCAGCTAGTACCTACATTCGAAAGgtaaggcaggtaggagtgattaagtaacttatcttgctttggtttctatg Alignment from CESAR TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggcggcccactctaggcctcctgctaattttagttttcttttctgcagTACTTTCTAAAGTGTGAT---GTTAACTGCTTGCCAGATATTGTATTT---------------ACATACCCAGTGCCAGCTAGTACCTACATTCGAAAGgtaaggcaggtaggagtgattaagtaacttatcttgctttggtttctatg Alignment from Spaln_aa2Genome TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggcggcccactctaggcctcctgctaattttagttttcttttctgcagTACTTTCTAAAGTGTGAT---GTTAACTGCTTGCCAGATATTGTATTT---------------ACATACCCAGTGCCAGCTAGTACCTACATTCGAAAGgtaaggcaggtaggagtgattaagtaacttatcttgctttggtttctatg Alignment from Spaln_nt2Genome TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggcggcccactctaggcctcctgctaattttagttttcttttctgcagTACTTTCTAAAGTGTGA---TGTTAACTGCTTGCCAGATATTGTAT---------------TTACATACCCAGTGCCAGCTAGTACCTACATTCGAAAGgtaaggcaggtaggagtgattaagtaacttatcttgctttggtttctatg Alignment from Pairagon TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggcggcccactctaggcctcctgctaattttagttttcttttctgcagTACTTTCTAAAGTGTGA---TGTTAACTGCTTGCCAGATATTGTAT---------------TTACATACCCAGTGCCAGCTAGTACCTACATTCGAAAGgtaaggcaggtaggagtgattaagtaacttatcttgctttggtttctatg Alignment from Exonerate_protein2genome TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggcggcccactctaggcctcctgctaattttagttttcttttctgcagTACTTTCTAAAGTGTGAT---GTTAACTGCTTGCCAGATATTGTATTT---------------ACATACCCAGTGCCAGCTAGTACCTACATTCGAAAGgtaaggcaggtaggagtgattaagtaacttatcttgctttggtttctatg Alignment from Exonerate_coding2genome TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggcggcccactctaggcctcctgctaattttagttttcttttctgcagTACTTTCTAAAGTGTGAT---GTTAACTGCTTGCCAGATATTGTATTT---------------ACATACCCAGTGCCAGCTAGTACCTACATTCGAAAGgtaaggcaggtaggagtgattaagtaacttatcttgctttggtttctatg Alignment from GeneWise TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggcggcccactctaggcctcctgctaattttagttttcttttctgcagTACTTTCTAAAGTGTGAT---GTTAACTGCTTGCCAGATATTGTATTTACA---------------TACCCAGTGCCAGCTAGTACCTACATTCGAAAGgtaaggcaggtaggagtgattaagtaacttatcttgctttggtttctatg #### Pga5_ID2971_7 --> 1 - 0 Original Alignment cATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG atttagagagaattctgtgatgttgctctttgcaattttcctctattcagcAATTCCATGAATGGGGAGGCCATTGCATCAGATGGTAGCTGCCAAGGCATTATGGATACAGGGGCTTCATTGCTGACTAGCCCTCAAAGCACCATTGTTAATATCCAGAATGTAATTGGTTCCAAGGGTTCTGGTGATGGTCAGgcaagggtttaaaaggttaaggtaatgggcggcccactctaggcctcctg Alignment from CESAR cATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG atttagagagaattctgtgatgttgctctttgcaattttcctctattcagcAATTCCATGAATGGGGAGGCCATTGCATCAGATGGTAGCTGCCAAGGCATTATGGATACAGGGGCTTCATTGCTGACTAGCCCTCAAAGCACCATTGTTAATATCCAGAATGTAATTGGTTCCAAGGGTTCTGGTGATGGTCAGgcaagggtttaaaaggttaaggtaatgggcggcccactctaggcctcctg Alignment from Spaln_aa2Genome CATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG atttagagagaattctgtgatgttgctctttgcaattttcctctattcagCAATTCCATGAATGGGGAGGCCATTGCATCAGATGGTAGCTGCCAAGGCATTATGGATACAGGGGCTTCATTGCTGACTAGCCCTCAAAGCACCATTGTTAATATCCAGAATGTAATTGGTTCCAAGGGTTCTGGTGATGGTCAGgcaagggtttaaaaggttaaggtaatgggcggcccactctaggcctcctg Alignment from Spaln_nt2Genome CATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG atttagagagaattctgtgatgttgctctttgcaattttcctctattcagCAATTCCATGAATGGGGAGGCCATTGCATCAGATGGTAGCTGCCAAGGCATTATGGATACAGGGGCTTCATTGCTGACTAGCCCTCAAAGCACCATTGTTAATATCCAGAATGTAATTGGTTCCAAGGGTTCTGGTGATGGTCAGgcaagggtttaaaaggttaaggtaatgggcggcccactctaggcctcctg Alignment from Pairagon CATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG atttagagagaattctgtgatgttgctctttgcaattttcctctattcagCAATTCCATGAATGGGGAGGCCATTGCATCAGATGGTAGCTGCCAAGGCATTATGGATACAGGGGCTTCATTGCTGACTAGCCCTCAAAGCACCATTGTTAATATCCAGAATGTAATTGGTTCCAAGGGTTCTGGTGATGGTCAGgcaagggtttaaaaggttaaggtaatgggcggcccactctaggcctcctg Alignment from Exonerate_protein2genome CATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG atttagagagaattctgtgatgttgctctttgcaattttcctctattcagCAATTCCATGAATGGGGAGGCCATTGCATCAGATGGTAGCTGCCAAGGCATTATGGATACAGGGGCTTCATTGCTGACTAGCCCTCAAAGCACCATTGTTAATATCCAGAATGTAATTGGTTCCAAGGGTTCTGGTGATGGTCAGgcaagggtttaaaaggttaaggtaatgggcggcccactctaggcctcctg Alignment from Exonerate_coding2genome CATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG atttagagagaattctgtgatgttgctctttgcaattttcctctattcagCAATTCCATGAATGGGGAGGCCATTGCATCAGATGGTAGCTGCCAAGGCATTATGGATACAGGGGCTTCATTGCTGACTAGCCCTCAAAGCACCATTGTTAATATCCAGAATGTAATTGGTTCCAAGGGTTCTGGTGATGGTCAGgcaagggtttaaaaggttaaggtaatgggcggcccactctaggcctcctg Alignment from GeneWise CATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG------ atttagagagaattctgtgatgttgctctttgcaattttcctctattcagCAATTCCATGAATGGGGAGGCCATTGCATCAGATGGTAGCTGCCAAGGCATTATGGATACAGGGGCTTCATTGCTGACTAGCCCTCAAAGCACCATTGTTAATATCCAGAATGTAATTGGTTCCAAGGGTTCTGGTGATGGTCAGGCAAGGgtttaaaaggttaaggtaatgggcggcccactctaggcctcctg #### Pi4k2a_ID8400_3 --> 0 - 0 Original Alignment GTAGTATACCTGGCCAGTGAAACCTTCAACTACAGTGCCATTGATCGAGTAAAGTCCAGGGGCAAGCGGCTTGCACTAGAGAAAGTGCCAAAAGTTGGGCAGCGGTTTAACCGAATCGGCCTGCCACCAAAG atattcttatgcaatagttagcgtttgctgctcctctcgggcatgcatagGTAGTATACCTGGCCAGTGAAACCTTCAACTACAGTGCCATTGATCGAGTAAAGTCCAGAGGCAAGCGGCTTGCGCTAGAGAAAGTGCCAAAGGTTGGGCAACGGTTCAACCGAATTGGCTTGCCACCAAAAgtaagtggtggacctagggtttatgaaaatggtcatatagtcagcattgc Alignment from CESAR GTAGTATACCTGGCCAGTGAAACCTTCAACTACAGTGCCATTGATCGAGTAAAGTCCAGGGGCAAGCGGCTTGCACTAGAGAAAGTGCCAAAAGTTGGGCAGCGGTTTAACCGAATCGGCCTGCCACCAAAG atattcttatgcaatagttagcgtttgctgctcctctcgggcatgcatagGTAGTATACCTGGCCAGTGAAACCTTCAACTACAGTGCCATTGATCGAGTAAAGTCCAGAGGCAAGCGGCTTGCGCTAGAGAAAGTGCCAAAGGTTGGGCAACGGTTCAACCGAATTGGCTTGCCACCAAAAgtaagtggtggacctagggtttatgaaaatggtcatatagtcagcattgc Alignment from Spaln_aa2Genome GTAGTATACCTGGCCAGTGAAACCTTCAACTACAGTGCCATTGATCGAGTAAAGTCCAGGGGCAAGCGGCTTGCACTAGAGAAAGTGCCAAAAGTTGGGCAGCGGTTTAACCGAATCGGCCTGCCACCAAAG atattcttatgcaatagttagcgtttgctgctcctctcgggcatgcatagGTAGTATACCTGGCCAGTGAAACCTTCAACTACAGTGCCATTGATCGAGTAAAGTCCAGAGGCAAGCGGCTTGCGCTAGAGAAAGTGCCAAAGGTTGGGCAACGGTTCAACCGAATTGGCTTGCCACCAAAAgtaagtggtggacctagggtttatgaaaatggtcatatagtcagcattgc Alignment from Spaln_nt2Genome GTAGTATACCTGGCCAGTGAAACCTTCAACTACAGTGCCATTGATCGAGTAAAGTCCAGGGGCAAGCGGCTTGCACTAGAGAAAGTGCCAAAAGTTGGGCAGCGGTTTAACCGAATCGGCCTGCCACCAAAG atattcttatgcaatagttagcgtttgctgctcctctcgggcatgcatagGTAGTATACCTGGCCAGTGAAACCTTCAACTACAGTGCCATTGATCGAGTAAAGTCCAGAGGCAAGCGGCTTGCGCTAGAGAAAGTGCCAAAGGTTGGGCAACGGTTCAACCGAATTGGCTTGCCACCAAAAgtaagtggtggacctagggtttatgaaaatggtcatatagtcagcattgc Alignment from Pairagon GTAGTATACCTGGCCAGTGAAACCTTCAACTACAGTGCCATTGATCGAGTAAAGTCCAGGGGCAAGCGGCTTGCACTAGAGAAAGTGCCAAAAGTTGGGCAGCGGTTTAACCGAATCGGCCTGCCACCAAAG atattcttatgcaatagttagcgtttgctgctcctctcgggcatgcatagGTAGTATACCTGGCCAGTGAAACCTTCAACTACAGTGCCATTGATCGAGTAAAGTCCAGAGGCAAGCGGCTTGCGCTAGAGAAAGTGCCAAAGGTTGGGCAACGGTTCAACCGAATTGGCTTGCCACCAAAAgtaagtggtggacctagggtttatgaaaatggtcatatagtcagcattgc Alignment from Exonerate_protein2genome GTAGTATACCTGGCCAGTGAAACCTTCAACTACAGTGCCATTGATCGAGTAAAGTCCAGGGGCAAGCGGCTTGCACTAGAGAAAGTGCCAAAAGTTGGGCAGCGGTTTAACCGAATCGGCCTGCCACCAAAG atattcttatgcaatagttagcgtttgctgctcctctcgggcatgcatagGTAGTATACCTGGCCAGTGAAACCTTCAACTACAGTGCCATTGATCGAGTAAAGTCCAGAGGCAAGCGGCTTGCGCTAGAGAAAGTGCCAAAGGTTGGGCAACGGTTCAACCGAATTGGCTTGCCACCAAAAgtaagtggtggacctagggtttatgaaaatggtcatatagtcagcattgc Alignment from Exonerate_coding2genome GTAGTATACCTGGCCAGTGAAACCTTCAACTACAGTGCCATTGATCGAGTAAAGTCCAGGGGCAAGCGGCTTGCACTAGAGAAAGTGCCAAAAGTTGGGCAGCGGTTTAACCGAATCGGCCTGCCACCAAAG atattcttatgcaatagttagcgtttgctgctcctctcgggcatgcatagGTAGTATACCTGGCCAGTGAAACCTTCAACTACAGTGCCATTGATCGAGTAAAGTCCAGAGGCAAGCGGCTTGCGCTAGAGAAAGTGCCAAAGGTTGGGCAACGGTTCAACCGAATTGGCTTGCCACCAAAAgtaagtggtggacctagggtttatgaaaatggtcatatagtcagcattgc Alignment from GeneWise GTAGTATACCTGGCCAGTGAAACCTTCAACTACAGTGCCATTGATCGAGTAAAGTCCAGGGGCAAGCGGCTTGCACTAGAGAAAGTGCCAAAAGTTGGGCAGCGGTTTAACCGAATCGGCCTGCCACCAAAG atattcttatgcaatagttagcgtttgctgctcctctcgggcatgcatagGTAGTATACCTGGCCAGTGAAACCTTCAACTACAGTGCCATTGATCGAGTAAAGTCCAGAGGCAAGCGGCTTGCGCTAGAGAAAGTGCCAAAGGTTGGGCAACGGTTCAACCGAATTGGCTTGCCACCAAAAgtaagtggtggacctagggtttatgaaaatggtcatatagtcagcattgc #### Pik3ap1_ID8154_15 --> 2 - 0 Original Alignment gcAGCACGAGTAACCGGTCGAGCACACGGAGCCTCCTCAGTGTGAGCAGTGGAATGGAGGGCGACAACGAG catgggctgtactcatatttcactcccaatcttattgtttcactttaaaggtAGCACTAGTAATTGGTCAAGTACACACAGCCTTCTCAGCGTGAGCAGTGGAATGGAGGGTGATAATGATgtaaggtacaatactccatgctggtctgtctgcctaggggtgagatattg Alignment from CESAR gcAGCACGAGTAACCGGTCGAGCACACGGAGCCTCCTCAGTGTGAGCAGTGGAATGGAGGGCGACAACGAG catgggctgtactcatatttcactcccaatcttattgtttcactttaaaggtAGCACTAGTAATTGGTCAAGTACACACAGCCTTCTCAGCGTGAGCAGTGGAATGGAGGGTGATAATGATgtaaggtacaatactccatgctggtctgtctgcctaggggtgagatattg Alignment from Spaln_aa2Genome GCAGCACGAGTAACCGGTCGAGCACACGGAGCCTCCTCAGTGTGAGCAGTGGAATGGAGGGCGACAACGAG catgggctgtactcatatttcactcccaatcttattgtttcactttaaagGTAGCACTAGTAATTGGTCAAGTACACACAGCCTTCTCAGCGTGAGCAGTGGAATGGAGGGTGATAATGATgtaaggtacaatactccatgctggtctgtctgcctaggggtgagatattg Alignment from Spaln_nt2Genome GCAGCACGAGTAACCGGTCGAGCACACGGAGCCTCCTCAGTGTGAGCAGTGGAATGGAGGGCGACAACGAG catgggctgtactcatatttcactcccaatcttattgtttcactttaaagGTAGCACTAGTAATTGGTCAAGTACACACAGCCTTCTCAGCGTGAGCAGTGGAATGGAGGGTGATAATGATgtaaggtacaatactccatgctggtctgtctgcctaggggtgagatattg Alignment from Pairagon GCAGCACGAGTAACCGGTCGAGCACACGGAGCCTCCTCAGTGTGAGCAGTGGAATGGAGGGCGACAACGAG catgggctgtactcatatttcactcccaatcttattgtttcactttaaagGTAGCACTAGTAATTGGTCAAGTACACACAGCCTTCTCAGCGTGAGCAGTGGAATGGAGGGTGATAATGATgtaaggtacaatactccatgctggtctgtctgcctaggggtgagatattg Alignment from Exonerate_protein2genome GCAGCACGAGTAACCGGTCGAGCACACGGAGCCTCCTCAGTGTGAGCAGTGGAATGGAGGGCGACAACGAG catgggctgtactcatatttcactcccaatcttattgtttcactttaaagGTAGCACTAGTAATTGGTCAAGTACACACAGCCTTCTCAGCGTGAGCAGTGGAATGGAGGGTGATAATGATgtaaggtacaatactccatgctggtctgtctgcctaggggtgagatattg Alignment from Exonerate_coding2genome GCAGCACGAGTAACCGGTCGAGCACACGGAGCCTCCTCAGTGTGAGCAGTGGAATGGAGGGCGACAACGAG catgggctgtactcatatttcactcccaatcttattgtttcactttaaagGTAGCACTAGTAATTGGTCAAGTACACACAGCCTTCTCAGCGTGAGCAGTGGAATGGAGGGTGATAATGATgtaaggtacaatactccatgctggtctgtctgcctaggggtgagatattg Alignment from GeneWise GCAGCACGAGTAACCGGTCGAGCACACGGAGCCTCCTCAGTGTGAGCAGTGGAATGGAGGGCGACAACGAG catgggctgtactcatatttcactcccaatcttattgtttcactttaaagGTAGCACTAGTAATTGGTCAAGTACACACAGCCTTCTCAGCGTGAGCAGTGGAATGGAGGGTGATAATGATgtaaggtacaatactccatgctggtctgtctgcctaggggtgagatattg #### Pik3ap1_ID8162_7 --> 2 - 0 Original Alignment atCAGAGGGACGAAGAGCTGCCCACGCTGTTGCATTTTGCTGCCAAGTATGGACTGAAGAACCTCACTGCCTTGCTGCTCACCTGTCCAGGGGCTCTCCAGGCCTACAGTGTAGCCAACAAGCACGGCCACTATCCCAACACCATTGCCGAGAAACACGGCTTCAGGGACCTGCGCCAGTTCATCGACGAGTATGTG actaggtcaggcatggttttcaatgtctccaagtctgtctcttctatcagatCAGAGGGATGAGGAGCTGCCAACACTCCTCCATTTTGCTGCCACACATGGATTAAAGAACCTCACTGCCTTATTATTGACATGTCCAGGTGCTCTGGAGGCCTACAGTGTAGCTAATAAGCATGGTCACTATCCCAATACAATTGCTGAGGAACATGGCTTTAGAGATCTGCGCCAATTGGTGGATGAGTATTTAgtaccatatgtatgaaagatgcacaaactcatgcttagaactaaataagc Alignment from CESAR atCAGAGGGACGAAGAGCTGCCCACGCTGTTGCATTTTGCTGCCAAGTATGGACTGAAGAACCTCACTGCCTTGCTGCTCACCTGTCCAGGGGCTCTCCAGGCCTACAGTGTAGCCAACAAGCACGGCCACTATCCCAACACCATTGCCGAGAAACACGGCTTCAGGGACCTGCGCCAGTTCATCGACGAGTATGTG actaggtcaggcatggttttcaatgtctccaagtctgtctcttctatcagatCAGAGGGATGAGGAGCTGCCAACACTCCTCCATTTTGCTGCCACACATGGATTAAAGAACCTCACTGCCTTATTATTGACATGTCCAGGTGCTCTGGAGGCCTACAGTGTAGCTAATAAGCATGGTCACTATCCCAATACAATTGCTGAGGAACATGGCTTTAGAGATCTGCGCCAATTGGTGGATGAGTATTTAgtaccatatgtatgaaagatgcacaaactcatgcttagaactaaataagc Alignment from Spaln_aa2Genome ATCAGAGGGACGAAGAGCTGCCCACGCTGTTGCATTTTGCTGCCAAGTATGGACTGAAGAACCTCACTGCCTTGCTGCTCACCTGTCCAGGGGCTCTCCAGGCCTACAGTGTAGCCAACAAGCACGGCCACTATCCCAACACCATTGCCGAGAAACACGGCTTCAGGGACCTGCGCCAGTTCATCGACGAGTATGTG actaggtcaggcatggttttcaatgtctccaagtctgtctcttctatcagATCAGAGGGATGAGGAGCTGCCAACACTCCTCCATTTTGCTGCCACACATGGATTAAAGAACCTCACTGCCTTATTATTGACATGTCCAGGTGCTCTGGAGGCCTACAGTGTAGCTAATAAGCATGGTCACTATCCCAATACAATTGCTGAGGAACATGGCTTTAGAGATCTGCGCCAATTGGTGGATGAGTATTTAgtaccatatgtatgaaagatgcacaaactcatgcttagaactaaataagc Alignment from Spaln_nt2Genome ATCAGAGGGACGAAGAGCTGCCCACGCTGTTGCATTTTGCTGCCAAGTATGGACTGAAGAACCTCACTGCCTTGCTGCTCACCTGTCCAGGGGCTCTCCAGGCCTACAGTGTAGCCAACAAGCACGGCCACTATCCCAACACCATTGCCGAGAAACACGGCTTCAGGGACCTGCGCCAGTTCATCGACGAGTATGTG actaggtcaggcatggttttcaatgtctccaagtctgtctcttctatcagATCAGAGGGATGAGGAGCTGCCAACACTCCTCCATTTTGCTGCCACACATGGATTAAAGAACCTCACTGCCTTATTATTGACATGTCCAGGTGCTCTGGAGGCCTACAGTGTAGCTAATAAGCATGGTCACTATCCCAATACAATTGCTGAGGAACATGGCTTTAGAGATCTGCGCCAATTGGTGGATGAGTATTTAgtaccatatgtatgaaagatgcacaaactcatgcttagaactaaataagc Alignment from Pairagon ATCAGAGGGACGAAGAGCTGCCCACGCTGTTGCATTTTGCTGCCAAGTATGGACTGAAGAACCTCACTGCCTTGCTGCTCACCTGTCCAGGGGCTCTCCAGGCCTACAGTGTAGCCAACAAGCACGGCCACTATCCCAACACCATTGCCGAGAAACACGGCTTCAGGGACCTGCGCCAGTTCATCGACGAGTATGTG actaggtcaggcatggttttcaatgtctccaagtctgtctcttctatcagATCAGAGGGATGAGGAGCTGCCAACACTCCTCCATTTTGCTGCCACACATGGATTAAAGAACCTCACTGCCTTATTATTGACATGTCCAGGTGCTCTGGAGGCCTACAGTGTAGCTAATAAGCATGGTCACTATCCCAATACAATTGCTGAGGAACATGGCTTTAGAGATCTGCGCCAATTGGTGGATGAGTATTTAgtaccatatgtatgaaagatgcacaaactcatgcttagaactaaataagc Alignment from Exonerate_protein2genome ATCAGAGGGACGAAGAGCTGCCCACGCTGTTGCATTTTGCTGCCAAGTATGGACTGAAGAACCTCACTGCCTTGCTGCTCACCTGTCCAGGGGCTCTCCAGGCCTACAGTGTAGCCAACAAGCACGGCCACTATCCCAACACCATTGCCGAGAAACACGGCTTCAGGGACCTGCGCCAGTTCATCGACGAGTATGTG actaggtcaggcatggttttcaatgtctccaagtctgtctcttctatcagATCAGAGGGATGAGGAGCTGCCAACACTCCTCCATTTTGCTGCCACACATGGATTAAAGAACCTCACTGCCTTATTATTGACATGTCCAGGTGCTCTGGAGGCCTACAGTGTAGCTAATAAGCATGGTCACTATCCCAATACAATTGCTGAGGAACATGGCTTTAGAGATCTGCGCCAATTGGTGGATGAGTATTTAgtaccatatgtatgaaagatgcacaaactcatgcttagaactaaataagc Alignment from Exonerate_coding2genome ATCAGAGGGACGAAGAGCTGCCCACGCTGTTGCATTTTGCTGCCAAGTATGGACTGAAGAACCTCACTGCCTTGCTGCTCACCTGTCCAGGGGCTCTCCAGGCCTACAGTGTAGCCAACAAGCACGGCCACTATCCCAACACCATTGCCGAGAAACACGGCTTCAGGGACCTGCGCCAGTTCATCGACGAGTATGTG actaggtcaggcatggttttcaatgtctccaagtctgtctcttctatcagATCAGAGGGATGAGGAGCTGCCAACACTCCTCCATTTTGCTGCCACACATGGATTAAAGAACCTCACTGCCTTATTATTGACATGTCCAGGTGCTCTGGAGGCCTACAGTGTAGCTAATAAGCATGGTCACTATCCCAATACAATTGCTGAGGAACATGGCTTTAGAGATCTGCGCCAATTGGTGGATGAGTATTTAgtaccatatgtatgaaagatgcacaaactcatgcttagaactaaataagc Alignment from GeneWise ATCAGAGGGACGAAGAGCTGCCCACGCTGTTGCATTTTGCTGCCAAGTATGGACTGAAGAACCTCACTGCCTTGCTGCTCACCTGTCCAGGGGCTCTCCAGGCCTACAGTGTAGCCAACAAGCACGGCCACTATCCCAACACCATTGCCGAGAAACACGGCTTCAGGGACCTGCGCCAGTTCATCGACGAGTATGTG actaggtcaggcatggttttcaatgtctccaagtctgtctcttctatcagATCAGAGGGATGAGGAGCTGCCAACACTCCTCCATTTTGCTGCCACACATGGATTAAAGAACCTCACTGCCTTATTATTGACATGTCCAGGTGCTCTGGAGGCCTACAGTGTAGCTAATAAGCATGGTCACTATCCCAATACAATTGCTGAGGAACATGGCTTTAGAGATCTGCGCCAATTGGTGGATGAGTATTTAgtaccatatgtatgaaagatgcacaaactcatgcttagaactaaataagc #### Pik3ap1_ID8164_5 --> 2 - 0 Original Alignment acCTCTCCTCGGGGAATGTTTCTCTGAAGGTCTATTCTGGGGACCTGGTGGTCTGCGAAACCACCGTCAGCTATTATACCGACATGGAGGAAATTGGGAACTTACTGTCGAGTGCTGCAAATCCTGTGGAGTTTATGTGTCAG gtacccttttatagggcacctgctattctctgtgccttatgtcttctcagacCTTTCCTCAGGGAATGTCTCTCTAAAGCTATATTCTGGAGACCTGGTGGTCTGTGAAACAACTGTCAGTTACTATACTGATATGGAAGAGATTGGGAACTTGCTCTCAAGTCCTGCAAACCCAGTGGAGTTAATGTGTCAGgtaagtccagacaaaagtcaatctgactcaacactaacaacactaacaca Alignment from CESAR acCTCTCCTCGGGGAATGTTTCTCTGAAGGTCTATTCTGGGGACCTGGTGGTCTGCGAAACCACCGTCAGCTATTATACCGACATGGAGGAAATTGGGAACTTACTGTCGAGTGCTGCAAATCCTGTGGAGTTTATGTGTCAG gtacccttttatagggcacctgctattctctgtgccttatgtcttctcagacCTTTCCTCAGGGAATGTCTCTCTAAAGCTATATTCTGGAGACCTGGTGGTCTGTGAAACAACTGTCAGTTACTATACTGATATGGAAGAGATTGGGAACTTGCTCTCAAGTCCTGCAAACCCAGTGGAGTTAATGTGTCAGgtaagtccagacaaaagtcaatctgactcaacactaacaacactaacaca Alignment from Spaln_aa2Genome ACCTCTCCTCGGGGAATGTTTCTCTGAAGGTCTATTCTGGGGACCTGGTGGTCTGCGAAACCACCGTCAGCTATTATACCGACATGGAGGAAATTGGGAACTTACTGTCGAGTGCTGCAAATCCTGTGGAGTTTATGTGTCAG gtacccttttatagggcacctgctattctctgtgccttatgtcttctcagACCTTTCCTCAGGGAATGTCTCTCTAAAGCTATATTCTGGAGACCTGGTGGTCTGTGAAACAACTGTCAGTTACTATACTGATATGGAAGAGATTGGGAACTTGCTCTCAAGTCCTGCAAACCCAGTGGAGTTAATGTGTCAGgtaagtccagacaaaagtcaatctgactcaacactaacaacactaacaca Alignment from Spaln_nt2Genome ACCTCTCCTCGGGGAATGTTTCTCTGAAGGTCTATTCTGGGGACCTGGTGGTCTGCGAAACCACCGTCAGCTATTATACCGACATGGAGGAAATTGGGAACTTACTGTCGAGTGCTGCAAATCCTGTGGAGTTTATGTGTCAG gtacccttttatagggcacctgctattctctgtgccttatgtcttctcagACCTTTCCTCAGGGAATGTCTCTCTAAAGCTATATTCTGGAGACCTGGTGGTCTGTGAAACAACTGTCAGTTACTATACTGATATGGAAGAGATTGGGAACTTGCTCTCAAGTCCTGCAAACCCAGTGGAGTTAATGTGTCAGgtaagtccagacaaaagtcaatctgactcaacactaacaacactaacaca Alignment from Pairagon ACCTCTCCTCGGGGAATGTTTCTCTGAAGGTCTATTCTGGGGACCTGGTGGTCTGCGAAACCACCGTCAGCTATTATACCGACATGGAGGAAATTGGGAACTTACTGTCGAGTGCTGCAAATCCTGTGGAGTTTATGTGTCAG gtacccttttatagggcacctgctattctctgtgccttatgtcttctcagACCTTTCCTCAGGGAATGTCTCTCTAAAGCTATATTCTGGAGACCTGGTGGTCTGTGAAACAACTGTCAGTTACTATACTGATATGGAAGAGATTGGGAACTTGCTCTCAAGTCCTGCAAACCCAGTGGAGTTAATGTGTCAGgtaagtccagacaaaagtcaatctgactcaacactaacaacactaacaca Alignment from Exonerate_protein2genome ACCTCTCCTCGGGGAATGTTTCTCTGAAGGTCTATTCTGGGGACCTGGTGGTCTGCGAAACCACCGTCAGCTATTATACCGACATGGAGGAAATTGGGAACTTACTGTCGAGTGCTGCAAATCCTGTGGAGTTTATGTGTCAG gtacccttttatagggcacctgctattctctgtgccttatgtcttctcagACCTTTCCTCAGGGAATGTCTCTCTAAAGCTATATTCTGGAGACCTGGTGGTCTGTGAAACAACTGTCAGTTACTATACTGATATGGAAGAGATTGGGAACTTGCTCTCAAGTCCTGCAAACCCAGTGGAGTTAATGTGTCAGgtaagtccagacaaaagtcaatctgactcaacactaacaacactaacaca Alignment from Exonerate_coding2genome ACCTCTCCTCGGGGAATGTTTCTCTGAAGGTCTATTCTGGGGACCTGGTGGTCTGCGAAACCACCGTCAGCTATTATACCGACATGGAGGAAATTGGGAACTTACTGTCGAGTGCTGCAAATCCTGTGGAGTTTATGTGTCAG gtacccttttatagggcacctgctattctctgtgccttatgtcttctcagACCTTTCCTCAGGGAATGTCTCTCTAAAGCTATATTCTGGAGACCTGGTGGTCTGTGAAACAACTGTCAGTTACTATACTGATATGGAAGAGATTGGGAACTTGCTCTCAAGTCCTGCAAACCCAGTGGAGTTAATGTGTCAGgtaagtccagacaaaagtcaatctgactcaacactaacaacactaacaca Alignment from GeneWise ACCTCTCCTCGGGGAATGTTTCTCTGAAGGTCTATTCTGGGGACCTGGTGGTCTGCGAAACCACCGTCAGCTATTATACCGACATGGAGGAAATTGGGAACTTACTGTCGAGTGCTGCAAATCCTGTGGAGTTTATGTGTCAG gtacccttttatagggcacctgctattctctgtgccttatgtcttctcagACCTTTCCTCAGGGAATGTCTCTCTAAAGCTATATTCTGGAGACCTGGTGGTCTGTGAAACAACTGTCAGTTACTATACTGATATGGAAGAGATTGGGAACTTGCTCTCAAGTCCTGCAAACCCAGTGGAGTTAATGTGTCAGgtaagtccagacaaaagtcaatctgactcaacactaacaacactaacaca #### Pik3ap1_ID8165_4 --> 0 - 1 Original Alignment GCAGAAACCACTGTGTATATCATTGTGAGATGCAAGCTGGACGAGAAGGTATCAACAGAAGCAGAGTTCTCTCCTGAGGATTCTCCCTCCATCCGGGTGGAAGGCACACTGGAGAATGAGTACACGGTCTCTGTGAAAGCACCAg cagaacaaagcctgataaagctggcctagtgggtatatctgtccccttagGCAAAGACTACTGTGTATATTATTGTGAGATGCAAACTGTCTGAGAAGGTATCAACAGAAGCCGAATTTTCTCCTGAGGATTCTCCCTCTGTGCAAGTAGAAGGTACACTTGAGAATGAGTATATGGTTTCTGTCAAGATGCCAggtgtgtagcccacctgtgccccaaagtgtattagtcatatctgcatcaag Alignment from CESAR GCAGAAACCACTGTGTATATCATTGTGAGATGCAAGCTGGACGAGAAGGTATCAACAGAAGCAGAGTTCTCTCCTGAGGATTCTCCCTCCATCCGGGTGGAAGGCACACTGGAGAATGAGTACACGGTCTCTGTGAAAGCACCAg cagaacaaagcctgataaagctggcctagtgggtatatctgtccccttagGCAAAGACTACTGTGTATATTATTGTGAGATGCAAACTGTCTGAGAAGGTATCAACAGAAGCCGAATTTTCTCCTGAGGATTCTCCCTCTGTGCAAGTAGAAGGTACACTTGAGAATGAGTATATGGTTTCTGTCAAGATGCCAggtgtgtagcccacctgtgccccaaagtgtattagtcatatctgcatcaag Alignment from Spaln_aa2Genome GCAGAAACCACTGTGTATATCATTGTGAGATGCAAGCTGGACGAGAAGGTATCAACAGAAGCAGAGTTCTCTCCTGAGGATTCTCCCTCCATCCGGGTGGAAGGCACACTGGAGAATGAGTACACGGTCTCTGTGAAAGCACCAG cagaacaaagcctgataaagctggcctagtgggtatatctgtccccttagGCAAAGACTACTGTGTATATTATTGTGAGATGCAAACTGTCTGAGAAGGTATCAACAGAAGCCGAATTTTCTCCTGAGGATTCTCCCTCTGTGCAAGTAGAAGGTACACTTGAGAATGAGTATATGGTTTCTGTCAAGATGCCAGgtgtgtagcccacctgtgccccaaagtgtattagtcatatctgcatcaag Alignment from Spaln_nt2Genome GCAGAAACCACTGTGTATATCATTGTGAGATGCAAGCTGGACGAGAAGGTATCAACAGAAGCAGAGTTCTCTCCTGAGGATTCTCCCTCCATCCGGGTGGAAGGCACACTGGAGAATGAGTACACGGTCTCTGTGAAAGCACCAG cagaacaaagcctgataaagctggcctagtgggtatatctgtccccttagGCAAAGACTACTGTGTATATTATTGTGAGATGCAAACTGTCTGAGAAGGTATCAACAGAAGCCGAATTTTCTCCTGAGGATTCTCCCTCTGTGCAAGTAGAAGGTACACTTGAGAATGAGTATATGGTTTCTGTCAAGATGCCAGgtgtgtagcccacctgtgccccaaagtgtattagtcatatctgcatcaag Alignment from Pairagon GCAGAAACCACTGTGTATATCATTGTGAGATGCAAGCTGGACGAGAAGGTATCAACAGAAGCAGAGTTCTCTCCTGAGGATTCTCCCTCCATCCGGGTGGAAGGCACACTGGAGAATGAGTACACGGTCTCTGTGAAAGCACCAG cagaacaaagcctgataaagctggcctagtgggtatatctgtccccttagGCAAAGACTACTGTGTATATTATTGTGAGATGCAAACTGTCTGAGAAGGTATCAACAGAAGCCGAATTTTCTCCTGAGGATTCTCCCTCTGTGCAAGTAGAAGGTACACTTGAGAATGAGTATATGGTTTCTGTCAAGATGCCAGgtgtgtagcccacctgtgccccaaagtgtattagtcatatctgcatcaag Alignment from Exonerate_protein2genome GCAGAAACCACTGTGTATATCATTGTGAGATGCAAGCTGGACGAGAAGGTATCAACAGAAGCAGAGTTCTCTCCTGAGGATTCTCCCTCCATCCGGGTGGAAGGCACACTGGAGAATGAGTACACGGTCTCTGTGAAAGCACCAG cagaacaaagcctgataaagctggcctagtgggtatatctgtccccttagGCAAAGACTACTGTGTATATTATTGTGAGATGCAAACTGTCTGAGAAGGTATCAACAGAAGCCGAATTTTCTCCTGAGGATTCTCCCTCTGTGCAAGTAGAAGGTACACTTGAGAATGAGTATATGGTTTCTGTCAAGATGCCAGgtgtgtagcccacctgtgccccaaagtgtattagtcatatctgcatcaag Alignment from Exonerate_coding2genome GCAGAAACCACTGTGTATATCATTGTGAGATGCAAGCTGGACGAGAAGGTATCAACAGAAGCAGAGTTCTCTCCTGAGGATTCTCCCTCCATCCGGGTGGAAGGCACACTGGAGAATGAGTACACGGTCTCTGTGAAAGCACCAG cagaacaaagcctgataaagctggcctagtgggtatatctgtccccttagGCAAAGACTACTGTGTATATTATTGTGAGATGCAAACTGTCTGAGAAGGTATCAACAGAAGCCGAATTTTCTCCTGAGGATTCTCCCTCTGTGCAAGTAGAAGGTACACTTGAGAATGAGTATATGGTTTCTGTCAAGATGCCAGgtgtgtagcccacctgtgccccaaagtgtattagtcatatctgcatcaag Alignment from GeneWise GCAGAAACCACTGTGTATATCATTGTGAGATGCAAGCTGGACGAGAAGGTATCAACAGAAGCAGAGTTCTCTCCTGAGGATTCTCCCTCCATCCGGGTGGAAGGCACACTGGAGAATGAGTACACGGTCTCTGTGAAAGCACCAG cagaacaaagcctgataaagctggcctagtgggtatatctgtccccttagGCAAAGACTACTGTGTATATTATTGTGAGATGCAAACTGTCTGAGAAGGTATCAACAGAAGCCGAATTTTCTCCTGAGGATTCTCCCTCTGTGCAAGTAGAAGGTACACTTGAGAATGAGTATATGGTTTCTGTCAAGATGCCAGgtgtgtagcccacctgtgccccaaagtgtattagtcatatctgcatcaag #### Pitpnm1_ID305_2 --> 0 - 2 Original Alignment AAAAAGAGCCGTGAGGAGTCTAGTGGTGAGGGCAGCGGCGTGGAGATCCTGGCCAACCGGCCCTACACAGATGGGCCTGGAGGCAACGGGCAGTATACACACAAGGTGTACCACGTGGGCTCCCACATCCCAGGCTGGTTCCGGGCACTGTTACCCAAGGCTGCTCTGCAGGTAGAAGAGGAATCTTGGAACGCTTACCCATATACCCGGACAcg taccaatgttaagtcaagagtcgggctctgaatttttgtaatatcatcagAAAAAGAGTCGTGAGGAGTCTAGTGGTGAGGGTAGTGGTGTGGAGGTCCTGGTGAACCACCACTACACAGATGGGCCTGGAGGCAATGGGGAGTATACACATGAGGTGTACCACATAGGCTCCCACATTCCTGGTTGGTTCCGTGCACTGCTGCCTAAGGCTGCTGTGCAGGTAGAAGAGGAATCTTGGAATGCTTACCCATATACCCGGACAcggtaagagttttacattgcatgaccttcagacctgaattcctttttctttt Alignment from CESAR AAAAAGAGCCGTGAGGAGTCTAGTGGTGAGGGCAGCGGCGTGGAGATCCTGGCCAACCGGCCCTACACAGATGGGCCTGGAGGCAACGGGCAGTATACACACAAGGTGTACCACGTGGGCTCCCACATCCCAGGCTGGTTCCGGGCACTGTTACCCAAGGCTGCTCTGCAGGTAGAAGAGGAATCTTGGAACGCTTACCCATATACCCGGACAcg taccaatgttaagtcaagagtcgggctctgaatttttgtaatatcatcagAAAAAGAGTCGTGAGGAGTCTAGTGGTGAGGGTAGTGGTGTGGAGGTCCTGGTGAACCACCACTACACAGATGGGCCTGGAGGCAATGGGGAGTATACACATGAGGTGTACCACATAGGCTCCCACATTCCTGGTTGGTTCCGTGCACTGCTGCCTAAGGCTGCTGTGCAGGTAGAAGAGGAATCTTGGAATGCTTACCCATATACCCGGACAcggtaagagttttacattgcatgaccttcagacctgaatgttacctccaatt Alignment from Spaln_aa2Genome AAAAAGAGCCGTGAGGAGTCTAGTGGTGAGGGCAGCGGCGTGGAGATCCTGGCCAACCGGCCCTACACAGATGGGCCTGGAGGCAACGGGCAGTATACACACAAGGTGTACCACGTGGGCTCCCACATCCCAGGCTGGTTCCGGGCACTGTTACCCAAGGCTGCTCTGCAGGTAGAAGAGGAATCTTGGAACGCTTACCCATATACCCGGACACG taccaatgttaagtcaagagtcgggctctgaatttttgtaatatcatcagAAAAAGAGTCGTGAGGAGTCTAGTGGTGAGGGTAGTGGTGTGGAGGTCCTGGTGAACCACCACTACACAGATGGGCCTGGAGGCAATGGGGAGTATACACATGAGGTGTACCACATAGGCTCCCACATTCCTGGTTGGTTCCGTGCACTGCTGCCTAAGGCTGCTGTGCAGGTAGAAGAGGAATCTTGGAATGCTTACCCATATACCCGGACACGgtaagagttttacattgcatgaccttcagacctgaattcctttttctttt Alignment from Spaln_nt2Genome AAAAAGAGCCGTGAGGAGTCTAGTGGTGAGGGCAGCGGCGTGGAGATCCTGGCCAACCGGCCCTACACAGATGGGCCTGGAGGCAACGGGCAGTATACACACAAGGTGTACCACGTGGGCTCCCACATCCCAGGCTGGTTCCGGGCACTGTTACCCAAGGCTGCTCTGCAGGTAGAAGAGGAATCTTGGAACGCTTACCCATATACCCGGACACG taccaatgttaagtcaagagtcgggctctgaatttttgtaatatcatcagAAAAAGAGTCGTGAGGAGTCTAGTGGTGAGGGTAGTGGTGTGGAGGTCCTGGTGAACCACCACTACACAGATGGGCCTGGAGGCAATGGGGAGTATACACATGAGGTGTACCACATAGGCTCCCACATTCCTGGTTGGTTCCGTGCACTGCTGCCTAAGGCTGCTGTGCAGGTAGAAGAGGAATCTTGGAATGCTTACCCATATACCCGGACACGgtaagagttttacattgcatgaccttcagacctgaattcctttttctttt Alignment from Pairagon AAAAAGAGCCGTGAGGAGTCTAGTGGTGAGGGCAGCGGCGTGGAGATCCTGGCCAACCGGCCCTACACAGATGGGCCTGGAGGCAACGGGCAGTATACACACAAGGTGTACCACGTGGGCTCCCACATCCCAGGCTGGTTCCGGGCACTGTTACCCAAGGCTGCTCTGCAGGTAGAAGAGGAATCTTGGAACGCTTACCCATATACCCGGACACG taccaatgttaagtcaagagtcgggctctgaatttttgtaatatcatcagAAAAAGAGTCGTGAGGAGTCTAGTGGTGAGGGTAGTGGTGTGGAGGTCCTGGTGAACCACCACTACACAGATGGGCCTGGAGGCAATGGGGAGTATACACATGAGGTGTACCACATAGGCTCCCACATTCCTGGTTGGTTCCGTGCACTGCTGCCTAAGGCTGCTGTGCAGGTAGAAGAGGAATCTTGGAATGCTTACCCATATACCCGGACACGgtaagagttttacattgcatgaccttcagacctgaattcctttttctttt Alignment from Exonerate_protein2genome AAAAAGAGCCGTGAGGAGTCTAGTGGTGAGGGCAGCGGCGTGGAGATCCTGGCCAACCGGCCCTACACAGATGGGCCTGGAGGCAACGGGCAGTATACACACAAGGTGTACCACGTGGGCTCCCACATCCCAGGCTGGTTCCGGGCACTGTTACCCAAGGCTGCTCTGCAGGTAGAAGAGGAATCTTGGAACGCTTACCCATATACCCGGACACG taccaatgttaagtcaagagtcgggctctgaatttttgtaatatcatcagAAAAAGAGTCGTGAGGAGTCTAGTGGTGAGGGTAGTGGTGTGGAGGTCCTGGTGAACCACCACTACACAGATGGGCCTGGAGGCAATGGGGAGTATACACATGAGGTGTACCACATAGGCTCCCACATTCCTGGTTGGTTCCGTGCACTGCTGCCTAAGGCTGCTGTGCAGGTAGAAGAGGAATCTTGGAATGCTTACCCATATACCCGGACACGgtaagagttttacattgcatgaccttcagacctgaattcctttttctttt Alignment from Exonerate_coding2genome AAAAAGAGCCGTGAGGAGTCTAGTGGTGAGGGCAGCGGCGTGGAGATCCTGGCCAACCGGCCCTACACAGATGGGCCTGGAGGCAACGGGCAGTATACACACAAGGTGTACCACGTGGGCTCCCACATCCCAGGCTGGTTCCGGGCACTGTTACCCAAGGCTGCTCTGCAGGTAGAAGAGGAATCTTGGAACGCTTACCCATATACCCGGACACG taccaatgttaagtcaagagtcgggctctgaatttttgtaatatcatcagAAAAAGAGTCGTGAGGAGTCTAGTGGTGAGGGTAGTGGTGTGGAGGTCCTGGTGAACCACCACTACACAGATGGGCCTGGAGGCAATGGGGAGTATACACATGAGGTGTACCACATAGGCTCCCACATTCCTGGTTGGTTCCGTGCACTGCTGCCTAAGGCTGCTGTGCAGGTAGAAGAGGAATCTTGGAATGCTTACCCATATACCCGGACACGgtaagagttttacattgcatgaccttcagacctgaattcctttttctttt Alignment from GeneWise AAAAAGAGCCGTGAGGAGTCTAGTGGTGAGGGCAGCGGCGTGGAGATCCTGGCCAACCGGCCCTACACAGATGGGCCTGGAGGCAACGGGCAGTATACACACAAGGTGTACCACGTGGGCTCCCACATCCCAGGCTGGTTCCGGGCACTGTTACCCAAGGCTGCTCTGCAGGTAGAAGAGGAATCTTGGAACGCTTACCCATATACCCGGACACG taccaatgttaagtcaagagtcgggctctgaatttttgtaatatcatcagAAAAAGAGTCGTGAGGAGTCTAGTGGTGAGGGTAGTGGTGTGGAGGTCCTGGTGAACCACCACTACACAGATGGGCCTGGAGGCAATGGGGAGTATACACATGAGGTGTACCACATAGGCTCCCACATTCCTGGTTGGTTCCGTGCACTGCTGCCTAAGGCTGCTGTGCAGGTAGAAGAGGAATCTTGGAATGCTTACCCATATACCCGGACACGgtaagagttttacattgcatgaccttcagacctgaattcctttttctttt #### Pitpnm1_ID310_7 --> 2 - 1 Original Alignment aaGGTTTCTCGGACAGTGATGAGGTCTTCCCCAAGGAGATGACCAAGTGGAATTCCAATGATTTTATCGATGCCTTTGCCTCCCCAACCGAGGTGGAGGGGGTACCAg tatgggtgatattaattcaccccaaaattgctgtctcttccttcctccagatGGGTTCTCAGATAGTGATGTAGTCTTCCCCAAGGAGATGTCCAAGTGGAATTCCAATGATTTTATTGAAACCTTTGCCCCCCCAACTGAGGTAGAGGGCATACCTggtaggtgctaaagctagacctaatgattctggatgcaaatatgctgcact Alignment from CESAR aaGGTTTCTCGGACAGTGATGAGGTCTTCCCCAAGGAGATGACCAAGTGGAATTCCAATGATTTTATCGATGCCTTTGCCTCCCCAACCGAGGTGGAGGGGGTACCAg tatgggtgatattaattcaccccaaaattgctgtctcttccttcctccagatGGGTTCTCAGATAGTGATGTAGTCTTCCCCAAGGAGATGTCCAAGTGGAATTCCAATGATTTTATTGAAACCTTTGCCCCCCCAACTGAGGTAGAGGGCATACCTggtaggtgctaaagctagacctaatgattctggatgcaaatatgctgcact Alignment from Spaln_aa2Genome AAGGTTTCTCGGACAGTGATGAGGTCTTCCCCAAGGAGATGACCAAGTGGAATTCCAATGATTTTATCGATGCCTTTGCCTCCCCAACCGAGGTGGAGGGGGTACCAG tatgggtgatattaattcaccccaaaattgctgtctcttccttcctccagATGGGTTCTCAGATAGTGATGTAGTCTTCCCCAAGGAGATGTCCAAGTGGAATTCCAATGATTTTATTGAAACCTTTGCCCCCCCAACTGAGGTAGAGGGCATACCTGgtaggtgctaaagctagacctaatgattctggatgcaaatatgctgcact Alignment from Spaln_nt2Genome AAGGTTTCTCGGACAGTGATGAGGTCTTCCCCAAGGAGATGACCAAGTGGAATTCCAATGATTTTATCGATGCCTTTGCCTCCCCAACCGAGGTGGAGGGGGTACCAG tatgggtgatattaattcaccccaaaattgctgtctcttccttcctccagATGGGTTCTCAGATAGTGATGTAGTCTTCCCCAAGGAGATGTCCAAGTGGAATTCCAATGATTTTATTGAAACCTTTGCCCCCCCAACTGAGGTAGAGGGCATACCTGgtaggtgctaaagctagacctaatgattctggatgcaaatatgctgcact Alignment from Pairagon AAGGTTTCTCGGACAGTGATGAGGTCTTCCCCAAGGAGATGACCAAGTGGAATTCCAATGATTTTATCGATGCCTTTGCCTCCCCAACCGAGGTGGAGGGGGTACCAG tatgggtgatattaattcaccccaaaattgctgtctcttccttcctccagATGGGTTCTCAGATAGTGATGTAGTCTTCCCCAAGGAGATGTCCAAGTGGAATTCCAATGATTTTATTGAAACCTTTGCCCCCCCAACTGAGGTAGAGGGCATACCTGgtaggtgctaaagctagacctaatgattctggatgcaaatatgctgcact Alignment from Exonerate_protein2genome AAGGTTTCTCGGACAGTGATGAGGTCTTCCCCAAGGAGATGACCAAGTGGAATTCCAATGATTTTATCGATGCCTTTGCCTCCCCAACCGAGGTGGAGGGGGTACCAG tatgggtgatattaattcaccccaaaattgctgtctcttccttcctccagATGGGTTCTCAGATAGTGATGTAGTCTTCCCCAAGGAGATGTCCAAGTGGAATTCCAATGATTTTATTGAAACCTTTGCCCCCCCAACTGAGGTAGAGGGCATACCTGgtaggtgctaaagctagacctaatgattctggatgcaaatatgctgcact Alignment from Exonerate_coding2genome AAGGTTTCTCGGACAGTGATGAGGTCTTCCCCAAGGAGATGACCAAGTGGAATTCCAATGATTTTATCGATGCCTTTGCCTCCCCAACCGAGGTGGAGGGGGTACCAG tatgggtgatattaattcaccccaaaattgctgtctcttccttcctccagATGGGTTCTCAGATAGTGATGTAGTCTTCCCCAAGGAGATGTCCAAGTGGAATTCCAATGATTTTATTGAAACCTTTGCCCCCCCAACTGAGGTAGAGGGCATACCTGgtaggtgctaaagctagacctaatgattctggatgcaaatatgctgcact Alignment from GeneWise AAGGTTTCTCGGACAGTGATGAGGTCTTCCCCAAGGAGATGACCAAGTGGAATTCCAATGATTTTATCGATGCCTTTGCCTCCCCAACCGAGGTGGAGGGGGTACCAG tatgggtgatattaattcaccccaaaattgctgtctcttccttcctccagATGGGTTCTCAGATAGTGATGTAGTCTTCCCCAAGGAGATGTCCAAGTGGAATTCCAATGATTTTATTGAAACCTTTGCCCCCCCAACTGAGGTAGAGGGCATACCTGgtaggtgctaaagctagacctaatgattctggatgcaaatatgctgcact #### Pitpnm1_ID314_11 --> 0 - 0 Original Alignment GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tccatacaggtagaaaaaccagcatattcactgagtctgctttttcctagGTGGTCTTAATTGGAGATGGGGTTGGTGGCATTCTTGGTTTTGATGCTCTCTGCCGCAGTGCCAGTGCAGGCCCAGGGAGCCAGGGCAGCAGCCACCGTGGGAGCATGgtaggcttccaacccagggagccagcagccgagggagccagggcagcaat Alignment from CESAR GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tccatacaggtagaaaaaccagcatattcactgagtctgctttttcctagGTGGTCTTAATTGGAGATGGGGTTGGTGGCATTCTTGGTTTTGATGCTCTCTGCCGCAGTGCCAGTGCAGGCCCAGGGAGCCAGGGCAGCAGCCACCGTGGGAGCATGgtaggcttccaacccagggagccagcagccgagggagccagggcagcaat Alignment from Spaln_aa2Genome GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tccatacaggtagaaaaaccagcatattcactgagtctgctttttcctagGTGGTCTTAATTGGAGATGGGGTTGGTGGCATTCTTGGTTTTGATGCTCTCTGCCGCAGTGCCAGTGCAGGCCCAGGGAGCCAGGGCAGCAGCCACCGTGGGAGCATGgtaggcttccaacccagggagccagcagccgagggagccagggcagcaat Alignment from Spaln_nt2Genome GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tccatacaggtagaaaaaccagcatattcactgagtctgctttttcctagGTGGTCTTAATTGGAGATGGGGTTGGTGGCATTCTTGGTTTTGATGCTCTCTGCCGCAGTGCCAGTGCAGGCCCAGGGAGCCAGGGCAGCAGCCACCGTGGGAGCATGgtaggcttccaacccagggagccagcagccgagggagccagggcagcaat Alignment from Pairagon GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tccatacaggtagaaaaaccagcatattcactgagtctgctttttcctagGTGGTCTTAATTGGAGATGGGGTTGGTGGCATTCTTGGTTTTGATGCTCTCTGCCGCAGTGCCAGTGCAGGCCCAGGGAGCCAGGGCAGCAGCCACCGTGGGAGCATGgtaggcttccaacccagggagccagcagccgagggagccagggcagcaat Alignment from Exonerate_protein2genome GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tccatacaggtagaaaaaccagcatattcactgagtctgctttttcctagGTGGTCTTAATTGGAGATGGGGTTGGTGGCATTCTTGGTTTTGATGCTCTCTGCCGCAGTGCCAGTGCAGGCCCAGGGAGCCAGGGCAGCAGCCACCGTGGGAGCATGgtaggcttccaacccagggagccagcagccgagggagccagggcagcaat Alignment from Exonerate_coding2genome GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tccatacaggtagaaaaaccagcatattcactgagtctgctttttcctagGTGGTCTTAATTGGAGATGGGGTTGGTGGCATTCTTGGTTTTGATGCTCTCTGCCGCAGTGCCAGTGCAGGCCCAGGGAGCCAGGGCAGCAGCCACCGTGGGAGCATGgtaggcttccaacccagggagccagcagccgagggagccagggcagcaat Alignment from GeneWise GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCCAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tccatacaggtagaaaaaccagcatattcactgagtctgctttttcctagGTGGTCTTAATTGGAGATGGGGTTGGTGGCATTCTTGGTTTTGATGCTCTCTGCCGCAGTGCCAGTGCAGGCCCAGGGAGCCAGGGCAGCAGCCACCGTGGGAGCATGgtaggcttccaacccagggagccagcagccgagggagccagggcagcaat #### Pitpnm1_ID319_16 --> 2 - 0 Original Alignment tcCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG agtatacagttgaagctgctttgtactcgaacacttctcatccactgcagtcCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACTCTACTGCCCGGAAGCACTTACAGCCTTTCCCACTGTCACACTGCCCCACCTCTTTCATGCAAGCTACTGGGAGTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgtaaggacaccccgggattggcccaacactgagccgagacaacaggaact Alignment from CESAR tcCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG agtatacagttgaagctgctttgtactcgaacacttctcatccactgcagtcCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACTCTACTGCCCGGAAGCACTTACAGCCTTTCCCACTGTCACACTGCCCCACCTCTTTCATGCAAGCTACTGGGAGTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgtaaggacaccccgggattggcccaacactgagccgagacaacaggaact Alignment from Spaln_aa2Genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG agtatacagttgaagctgctttgtactcgaacacttctcatccactgcagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACTCTACTGCCCGGAAGCACTTACAGCCTTTCCCACTGTCACACTGCCCCACCTCTTTCATGCAAGCTACTGGGAGTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgtaaggacaccccgggattggcccaacactgagccgagacaacaggaact Alignment from Spaln_nt2Genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG agtatacagttgaagctgctttgtactcgaacacttctcatccactgcagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACTCTACTGCCCGGAAGCACTTACAGCCTTTCCCACTGTCACACTGCCCCACCTCTTTCATGCAAGCTACTGGGAGTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgtaaggacaccccgggattggcccaacactgagccgagacaacaggaact Alignment from Pairagon TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG agtatacagttgaagctgctttgtactcgaacacttctcatccactgcagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACTCTACTGCCCGGAAGCACTTACAGCCTTTCCCACTGTCACACTGCCCCACCTCTTTCATGCAAGCTACTGGGAGTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgtaaggacaccccgggattggcccaacactgagccgagacaacaggaact Alignment from Exonerate_protein2genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG agtatacagttgaagctgctttgtactcgaacacttctcatccactgcagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACTCTACTGCCCGGAAGCACTTACAGCCTTTCCCACTGTCACACTGCCCCACCTCTTTCATGCAAGCTACTGGGAGTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgtaaggacaccccgggattggcccaacactgagccgagacaacaggaact Alignment from Exonerate_coding2genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG agtatacagttgaagctgctttgtactcgaacacttctcatccactgcagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACTCTACTGCCCGGAAGCACTTACAGCCTTTCCCACTGTCACACTGCCCCACCTCTTTCATGCAAGCTACTGGGAGTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgtaaggacaccccgggattggcccaacactgagccgagacaacaggaact Alignment from GeneWise TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG agtatacagttgaagctgctttgtactcgaacacttctcatccactgcagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACTCTACTGCCCGGAAGCACTTACAGCCTTTCCCACTGTCACACTGCCCCACCTCTTTCATGCAAGCTACTGGGAGTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgtaaggacaccccgggattggcccaacactgagccgagacaacaggaact #### Pitpnm1_ID325_22 --> 0 - 0 Original Alignment GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tctgccgagaaatcagccgttagtctgatctggcttccgtcttcctccagGTTGATGTAAACATCATAGCTGGATATGGGTCCCCAAAAGATGTAGCAGTTTATGCAGCATTAGGACTCTCTCCAAGTTATACCTACATTATTGGCCGTGGCATCCGTACATTGCAGGCCCAGTGCCAGgtgagtgatttgagaatgagtagccaatgaaattctgataccaatgtcta Alignment from CESAR GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tctgccgagaaatcagccgttagtctgatctggcttccgtcttcctccagGTTGATGTAAACATCATAGCTGGATATGGGTCCCCAAAAGATGTAGCAGTTTATGCAGCATTAGGACTCTCTCCAAGTTATACCTACATTATTGGCCGTGGCATCCGTACATTGCAGGCCCAGTGCCAGgtgagtgatttgagaatgagtagccaatgaaattctgataccaatgtcta Alignment from Spaln_aa2Genome GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tctgccgagaaatcagccgttagtctgatctggcttccgtcttcctccagGTTGATGTAAACATCATAGCTGGATATGGGTCCCCAAAAGATGTAGCAGTTTATGCAGCATTAGGACTCTCTCCAAGTTATACCTACATTATTGGCCGTGGCATCCGTACATTGCAGGCCCAGTGCCAGgtgagtgatttgagaatgagtagccaatgaaattctgataccaatgtcta Alignment from Spaln_nt2Genome GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tctgccgagaaatcagccgttagtctgatctggcttccgtcttcctccagGTTGATGTAAACATCATAGCTGGATATGGGTCCCCAAAAGATGTAGCAGTTTATGCAGCATTAGGACTCTCTCCAAGTTATACCTACATTATTGGCCGTGGCATCCGTACATTGCAGGCCCAGTGCCAGgtgagtgatttgagaatgagtagccaatgaaattctgataccaatgtcta Alignment from Pairagon GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tctgccgagaaatcagccgttagtctgatctggcttccgtcttcctccagGTTGATGTAAACATCATAGCTGGATATGGGTCCCCAAAAGATGTAGCAGTTTATGCAGCATTAGGACTCTCTCCAAGTTATACCTACATTATTGGCCGTGGCATCCGTACATTGCAGGCCCAGTGCCAGgtgagtgatttgagaatgagtagccaatgaaattctgataccaatgtcta Alignment from Exonerate_protein2genome GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tctgccgagaaatcagccgttagtctgatctggcttccgtcttcctccagGTTGATGTAAACATCATAGCTGGATATGGGTCCCCAAAAGATGTAGCAGTTTATGCAGCATTAGGACTCTCTCCAAGTTATACCTACATTATTGGCCGTGGCATCCGTACATTGCAGGCCCAGTGCCAGgtgagtgatttgagaatgagtagccaatgaaattctgataccaatgtcta Alignment from Exonerate_coding2genome GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tctgccgagaaatcagccgttagtctgatctggcttccgtcttcctccagGTTGATGTAAACATCATAGCTGGATATGGGTCCCCAAAAGATGTAGCAGTTTATGCAGCATTAGGACTCTCTCCAAGTTATACCTACATTATTGGCCGTGGCATCCGTACATTGCAGGCCCAGTGCCAGgtgagtgatttgagaatgagtagccaatgaaattctgataccaatgtcta Alignment from GeneWise GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tctgccgagaaatcagccgttagtctgatctggcttccgtcttcctccagGTTGATGTAAACATCATAGCTGGATATGGGTCCCCAAAAGATGTAGCAGTTTATGCAGCATTAGGACTCTCTCCAAGTTATACCTACATTATTGGCCGTGGCATCCGTACATTGCAGGCCCAGTGCCAGgtgagtgatttgagaatgagtagccaatgaaattctgataccaatgtcta #### Pkd2l1_ID8956_12 --> 1 - 0 Original Alignment aCTGGGGCACGAGGAGCACGAGATCACCGCTGCCTTCACCAGGTTTGATCAGGATGGGGAC------CACATACTGGATGAGGAGGAGCAGGAACAGATGCGGCAGGGACTGGAAGAGGAGAGG ctgggagtagtctgtatggctacacctcccgctccttcgctcccatctagaCTGGTACATGAGGAGCATGAGATAACTGGTCCATTCACCAGGTTT------GATGGGGATGGGGACCACATATTGGATGAGGAGGAGCAGGAACAAATGCGGCAGGGACTTGAAGGGGATAAGgtgggtatatccattcaacagcaattacaatattgtgcagggcaatctta Alignment from CESAR aCTGGGGCACGAGGAGCACGAGATCACCGCTGCCTTCACCAGGTTTGATCAGGATGGGGACCACATACTGGATGAGGAGGAGCAGGAACAGATGCGGCAGGGACTGGAAGAGGAGAGG ctgggagtagtctgtatggctacacctcccgctccttcgctcccatctagaCTGGTACATGAGGAGCATGAGATAACTGGTCCATTCACCAGGTTTGATGGGGATGGGGACCACATATTGGATGAGGAGGAGCAGGAACAAATGCGGCAGGGACTTGAAGGGGATAAGgtgggtatatccattcaacagcaattacaatattgtgcagggcaatctta Alignment from Spaln_aa2Genome ACTGGGGCACGAGGAGCACGAGATCACCGCTGCCTTCACCAGGTTTGATCAGGATGGGGACCACATACTGGATGAGGAGGAGCAGGAACAGATGCGGCAGGGACTGGAAGAGGAGAGG ctgggagtagtctgtatggctacacctcccgctccttcgctcccatctagACTGGTACATGAGGAGCATGAGATAACTGGTCCATTCACCAGGTTTGATGGGGATGGGGACCACATATTGGATGAGGAGGAGCAGGAACAAATGCGGCAGGGACTTGAAGGGGATAAGgtgggtatatccattcaacagcaattacaatattgtgcagggcaatctta Alignment from Spaln_nt2Genome ACTGGGGCACGAGGAGCACGAGATCACCGCTGCCTTCACCAGGTTTGATCAGGATGGGGACCACATACTGGATGAGGAGGAGCAGGAACAGATGCGGCAGGGACTGGAAGAGGAGAGG ctgggagtagtctgtatggctacacctcccgctccttcgctcccatctagACTGGTACATGAGGAGCATGAGATAACTGGTCCATTCACCAGGTTTGATGGGGATGGGGACCACATATTGGATGAGGAGGAGCAGGAACAAATGCGGCAGGGACTTGAAGGGGATAAGgtgggtatatccattcaacagcaattacaatattgtgcagggcaatctta Alignment from Pairagon ACTGGGGCACGAGGAGCACGAGATCACCGCTGCCTTCACCAGGTTTGATCAGGATGGGGACCACATACTGGATGAGGAGGAGCAGGAACAGATGCGGCAGGGACTGGAAGAGGAGAGG ctgggagtagtctgtatggctacacctcccgctccttcgctcccatctagACTGGTACATGAGGAGCATGAGATAACTGGTCCATTCACCAGGTTTGATGGGGATGGGGACCACATATTGGATGAGGAGGAGCAGGAACAAATGCGGCAGGGACTTGAAGGGGATAAGgtgggtatatccattcaacagcaattacaatattgtgcagggcaatctta Alignment from Exonerate_protein2genome ACTGGGGCACGAGGAGCACGAGATCACCGCTGCCTTCACCAGGTTTGATCAGGATGGGGACCACATACTGGATGAGGAGGAGCAGGAACAGATGCGGCAGGGACTGGAAGAGGAGAGG ctgggagtagtctgtatggctacacctcccgctccttcgctcccatctagACTGGTACATGAGGAGCATGAGATAACTGGTCCATTCACCAGGTTTGATGGGGATGGGGACCACATATTGGATGAGGAGGAGCAGGAACAAATGCGGCAGGGACTTGAAGGGGATAAGgtgggtatatccattcaacagcaattacaatattgtgcagggcaatctta Alignment from Exonerate_coding2genome ACTGGGGCACGAGGAGCACGAGATCACCGCTGCCTTCACCAGGTTTGATCAGGATGGGGACCACATACTGGATGAGGAGGAGCAGGAACAGATGCGGCAGGGACTGGAAGAGGAGAGG ctgggagtagtctgtatggctacacctcccgctccttcgctcccatctagACTGGTACATGAGGAGCATGAGATAACTGGTCCATTCACCAGGTTTGATGGGGATGGGGACCACATATTGGATGAGGAGGAGCAGGAACAAATGCGGCAGGGACTTGAAGGGGATAAGgtgggtatatccattcaacagcaattacaatattgtgcagggcaatctta Alignment from GeneWise ACTGGGGCACGAGGAGCACGAGATCACCGCTGCCTTCACCAGGTTTGATCAGGATGGGGACCACATACTGGATGAGGAGGAGCAGGAACAGATGCGGCAGGGACTGGAAGAGGAGAGG ctgggagtagtctgtatggctacacctcccgctccttcgctcccatctagACTGGTACATGAGGAGCATGAGATAACTGGTCCATTCACCAGGTTTGATGGGGATGGGGACCACATATTGGATGAGGAGGAGCAGGAACAAATGCGGCAGGGACTTGAAGGGGATAAGgtgggtatatccattcaacagcaattacaatattgtgcagggcaatctta #### Pla2g16_ID2178_2 --> 0 - 1 Original Alignment CCAGAACCCAAGCCTGGAGACCTGATTGAGATTTTCCGCCCTATGTACAGACACTGGGCCATCTATGTTGGTGATGGATACGTGATCCACCTGGCTCCTCCAa tcctggttctgtagctgagacaacatttctaactttgaatctcttcttagCCAGAACCCAAACCAGGTGACCTG---AAAATCTTCTGCCCTATGTATAGACATTGGGCCATCTATGTTGGTGATGGCTATGTGATCCACCTAGCTCCTCCAagtttgtaaagcagtgtgtcctctctcccaagtaacacgcggcctagaaaa Alignment from CESAR CCAGAACCCAAGCCTGGAGACCTGATTGAGATTTTCCGCCCTATGTACAGACACTGGGCCATCTATGTTGGTGATGGATACGTGATCCACCTGGCTCCTCCAa tcctggttctgtagctgagacaacatttctaactttgaatctcttcttagCCAGAACCCAAACCAGGTGACCTG---AAAATCTTCTGCCCTATGTATAGACATTGGGCCATCTATGTTGGTGATGGCTATGTGATCCACCTAGCTCCTCCAagtttgtaaagcagtgtgtcctctctcccaagtaacacgcggcctagaaaa Alignment from Spaln_aa2Genome CCAGAACCCAAGCCTGGAGACCTGATTGAGATTTTCCGCCCTATGTACAGACACTGGGCCATCTATGTTGGTGATGGATACGTGATCCACCTGGCTCCTCCAA tcctggttctgtagctgagacaacatttctaactttgaatctcttcttagCCAGAACCCAAACCAGGTGACCTG---AAAATCTTCTGCCCTATGTATAGACATTGGGCCATCTATGTTGGTGATGGCTATGTGATCCACCTAGCTCCTCCAAgtttgtaaagcagtgtgtcctctctcccaagtaacacgcggcctagaaaa Alignment from Spaln_nt2Genome CCAGAACCCAAGCCTGGAGACCTGATTGAGATTTTCCGCCCTATGTACAGACACTGGGCCATCTATGTTGGTGATGGATACGTGATCCACCTGGCTCCTCCAA tcctggttctgtagctgagacaacatttctaactttgaatctcttcttagCCAGAACCCAAACCAGGTGACCTGA---AAATCTTCTGCCCTATGTATAGACATTGGGCCATCTATGTTGGTGATGGCTATGTGATCCACCTAGCTCCTCCAAgtttgtaaagcagtgtgtcctctctcccaagtaacacgcggcctagaaaa Alignment from Pairagon CCAGAACCCAAGCCTGGAGACCTGATTGAGATTTTCCGCCCTATGTACAGACACTGGGCCATCTATGTTGGTGATGGATACGTGATCCACCTGGCTCCTCCAA tcctggttctgtagctgagacaacatttctaactttgaatctcttcttagCCAGAACCCAAACCAGGTGACCTGA---AAATCTTCTGCCCTATGTATAGACATTGGGCCATCTATGTTGGTGATGGCTATGTGATCCACCTAGCTCCTCCAAgtttgtaaagcagtgtgtcctctctcccaagtaacacgcggcctagaaaa Alignment from Exonerate_protein2genome CCAGAACCCAAGCCTGGAGACCTGATTGAGATTTTCCGCCCTATGTACAGACACTGGGCCATCTATGTTGGTGATGGATACGTGATCCACCTGGCTCCTCCAA tcctggttctgtagctgagacaacatttctaactttgaatctcttcttagCCAGAACCCAAACCAGGTGACCTG---AAAATCTTCTGCCCTATGTATAGACATTGGGCCATCTATGTTGGTGATGGCTATGTGATCCACCTAGCTCCTCCAAgtttgtaaagcagtgtgtcctctctcccaagtaacacgcggcctagaaaa Alignment from Exonerate_coding2genome CCAGAACCCAAGCCTGGAGACCTGATTGAGATTTTCCGCCCTATGTACAGACACTGGGCCATCTATGTTGGTGATGGATACGTGATCCACCTGGCTCCTCCAA tcctggttctgtagctgagacaacatttctaactttgaatctcttcttagCCAGAACCCAAACCAGGTGACCTG---AAAATCTTCTGCCCTATGTATAGACATTGGGCCATCTATGTTGGTGATGGCTATGTGATCCACCTAGCTCCTCCAAgtttgtaaagcagtgtgtcctctctcccaagtaacacgcggcctagaaaa Alignment from GeneWise CTAGCACCCATACCAGAACCCAAGCCTGGAGACCTGATTGAGATTTTCCGCCCTATGTACAGACACTGGGCCATCTATGTTGGTGATGGATACGTGATCCACCTGGCTCCTCCAA tcctggttctgtagctgagacaacatttctaactttgaatctcttcttag------------CCAGAACCCAAACCAGGTGACCTG---AAAATCTTCTGCCCTATGTATAGACATTGGGCCATCTATGTTGGTGATGGCTATGTGATCCACCTAGCTCCTCCAAgtttgtaaagcagtgtgtcctctctcccaagtaacacgcggcctagaaaa #### Plcb3_ID1910_21 --> 2 - 1 Original Alignment gaTACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGg gagctctaacacagttacaaaatcgtgtatgctgatttctgtttttgcaggcTACCACTATGTGTGCTTGCGAAACGAGGCTAACCAATCTTTGTGCTTGCCTGCCTTGCTTATATACACTGAAGCTTCCGACTACATCCCAGATGACCACCAGggtgagcgagatgaccggcaaaagtgggagatgaggtgaaggtcttatgtg Alignment from CESAR gaTACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGg gagctctaacacagttacaaaatcgtgtatgctgatttctgtttttgcaggcTACCACTATGTGTGCTTGCGAAACGAGGCTAACCAATCTTTGTGCTTGCCTGCCTTGCTTATATACACTGAAGCTTCCGACTACATCCCAGATGACCACCAGggtgagcgagatgaccggcaaaagtgggagatgaggtgaaggtcttatgtg Alignment from Spaln_aa2Genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG gagctctaacacagttacaaaatcgtgtatgctgatttctgtttttgcagGCTACCACTATGTGTGCTTGCGAAACGAGGCTAACCAATCTTTGTGCTTGCCTGCCTTGCTTATATACACTGAAGCTTCCGACTACATCCCAGATGACCACCAGGgtgagcgagatgaccggcaaaagtgggagatgaggtgaaggtcttatgtg Alignment from Spaln_nt2Genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG gagctctaacacagttacaaaatcgtgtatgctgatttctgtttttgcagGCTACCACTATGTGTGCTTGCGAAACGAGGCTAACCAATCTTTGTGCTTGCCTGCCTTGCTTATATACACTGAAGCTTCCGACTACATCCCAGATGACCACCAGGgtgagcgagatgaccggcaaaagtgggagatgaggtgaaggtcttatgtg Alignment from Pairagon GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG gagctctaacacagttacaaaatcgtgtatgctgatttctgtttttgcagGCTACCACTATGTGTGCTTGCGAAACGAGGCTAACCAATCTTTGTGCTTGCCTGCCTTGCTTATATACACTGAAGCTTCCGACTACATCCCAGATGACCACCAGGgtgagcgagatgaccggcaaaagtgggagatgaggtgaaggtcttatgtg Alignment from Exonerate_protein2genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG gagctctaacacagttacaaaatcgtgtatgctgatttctgtttttgcagGCTACCACTATGTGTGCTTGCGAAACGAGGCTAACCAATCTTTGTGCTTGCCTGCCTTGCTTATATACACTGAAGCTTCCGACTACATCCCAGATGACCACCAGGgtgagcgagatgaccggcaaaagtgggagatgaggtgaaggtcttatgtg Alignment from Exonerate_coding2genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG gagctctaacacagttacaaaatcgtgtatgctgatttctgtttttgcagGCTACCACTATGTGTGCTTGCGAAACGAGGCTAACCAATCTTTGTGCTTGCCTGCCTTGCTTATATACACTGAAGCTTCCGACTACATCCCAGATGACCACCAGGgtgagcgagatgaccggcaaaagtgggagatgaggtgaaggtcttatgtg Alignment from GeneWise GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG gagctctaacacagttacaaaatcgtgtatgctgatttctgtttttgcagGCTACCACTATGTGTGCTTGCGAAACGAGGCTAACCAATCTTTGTGCTTGCCTGCCTTGCTTATATACACTGAAGCTTCCGACTACATCCCAGATGACCACCAGGgtgagcgagatgaccggcaaaagtgggagatgaggtgaaggtcttatgtg #### Plcb3_ID1912_19 --> 0 - 0 Original Alignment GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG cacaggaaaaccctctcattaacttccacctgaaaacttctactccccagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTCGGTATCTACGTTGAGGTGGACATGTTTGGCCTTCCATTAGATACCAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCATTTGACTTCCCCAAGgtaacacctagcacctgtccctcccagttcatgtaggaccgcagcacagc Alignment from CESAR GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG cacaggaaaaccctctcattaacttccacctgaaaacttctactccccagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTCGGTATCTACGTTGAGGTGGACATGTTTGGCCTTCCATTAGATACCAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCATTTGACTTCCCCAAGgtaacacctagcacctgtccctcccagttcatgtaggaccgcagcacagc Alignment from Spaln_aa2Genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG cacaggaaaaccctctcattaacttccacctgaaaacttctactccccagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTCGGTATCTACGTTGAGGTGGACATGTTTGGCCTTCCATTAGATACCAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCATTTGACTTCCCCAAGgtaacacctagcacctgtccctcccagttcatgtaggaccgcagcacagc Alignment from Spaln_nt2Genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG cacaggaaaaccctctcattaacttccacctgaaaacttctactccccagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTCGGTATCTACGTTGAGGTGGACATGTTTGGCCTTCCATTAGATACCAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCATTTGACTTCCCCAAGgtaacacctagcacctgtccctcccagttcatgtaggaccgcagcacagc Alignment from Pairagon GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG cacaggaaaaccctctcattaacttccacctgaaaacttctactccccagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTCGGTATCTACGTTGAGGTGGACATGTTTGGCCTTCCATTAGATACCAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCATTTGACTTCCCCAAGgtaacacctagcacctgtccctcccagttcatgtaggaccgcagcacagc Alignment from Exonerate_protein2genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG cacaggaaaaccctctcattaacttccacctgaaaacttctactccccagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTCGGTATCTACGTTGAGGTGGACATGTTTGGCCTTCCATTAGATACCAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCATTTGACTTCCCCAAGgtaacacctagcacctgtccctcccagttcatgtaggaccgcagcacagc Alignment from Exonerate_coding2genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG cacaggaaaaccctctcattaacttccacctgaaaacttctactccccagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTCGGTATCTACGTTGAGGTGGACATGTTTGGCCTTCCATTAGATACCAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCATTTGACTTCCCCAAGgtaacacctagcacctgtccctcccagttcatgtaggaccgcagcacagc Alignment from GeneWise GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG cacaggaaaaccctctcattaacttccacctgaaaacttctactccccagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTCGGTATCTACGTTGAGGTGGACATGTTTGGCCTTCCATTAGATACCAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCATTTGACTTCCCCAAGgtaacacctagcacctgtccctcccagttcatgtaggaccgcagcacagc #### Plcb3_ID1913_18 --> 2 - 0 Original Alignment atTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG ggtacaatgtatgctgatctctcactgcccatctccctttgttttcccagatTTGCCAATGCAGCTCAATGCAGGTGTTGTTGAGTACAATGGGCGCAGTGGGTATTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGCCCTAGTGGCCAATGCATTGAGGGTCAAGgtaccagcataatgattatggcaacgggtttcttgaactgcctcccacta Alignment from CESAR atTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG ggtacaatgtatgctgatctctcactgcccatctccctttgttttcccagatTTGCCAATGCAGCTCAATGCAGGTGTTGTTGAGTACAATGGGCGCAGTGGGTATTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGCCCTAGTGGCCAATGCATTGAGGGTCAAGgtaccagcataatgattatggcaacgggtttcttgaactgcctcccacta Alignment from Spaln_aa2Genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG ggtacaatgtatgctgatctctcactgcccatctccctttgttttcccagATTTGCCAATGCAGCTCAATGCAGGTGTTGTTGAGTACAATGGGCGCAGTGGGTATTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGCCCTAGTGGCCAATGCATTGAGGGTCAAGgtaccagcataatgattatggcaacgggtttcttgaactgcctcccacta Alignment from Spaln_nt2Genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG ggtacaatgtatgctgatctctcactgcccatctccctttgttttcccagATTTGCCAATGCAGCTCAATGCAGGTGTTGTTGAGTACAATGGGCGCAGTGGGTATTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGCCCTAGTGGCCAATGCATTGAGGGTCAAGgtaccagcataatgattatggcaacgggtttcttgaactgcctcccacta Alignment from Pairagon ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG ggtacaatgtatgctgatctctcactgcccatctccctttgttttcccagATTTGCCAATGCAGCTCAATGCAGGTGTTGTTGAGTACAATGGGCGCAGTGGGTATTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGCCCTAGTGGCCAATGCATTGAGGGTCAAGgtaccagcataatgattatggcaacgggtttcttgaactgcctcccacta Alignment from Exonerate_protein2genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG ggtacaatgtatgctgatctctcactgcccatctccctttgttttcccagATTTGCCAATGCAGCTCAATGCAGGTGTTGTTGAGTACAATGGGCGCAGTGGGTATTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGCCCTAGTGGCCAATGCATTGAGGGTCAAGgtaccagcataatgattatggcaacgggtttcttgaactgcctcccacta Alignment from Exonerate_coding2genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG ggtacaatgtatgctgatctctcactgcccatctccctttgttttcccagATTTGCCAATGCAGCTCAATGCAGGTGTTGTTGAGTACAATGGGCGCAGTGGGTATTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGCCCTAGTGGCCAATGCATTGAGGGTCAAGgtaccagcataatgattatggcaacgggtttcttgaactgcctcccacta Alignment from GeneWise ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG ggtacaatgtatgctgatctctcactgcccatctccctttgttttcccagATTTGCCAATGCAGCTCAATGCAGGTGTTGTTGAGTACAATGGGCGCAGTGGGTATTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGCCCTAGTGGCCAATGCATTGAGGGTCAAGgtaccagcataatgattatggcaacgggtttcttgaactgcctcccacta #### Plcb3_ID1914_17 --> 1 - 1 Original Alignment aTACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGg cctcctggctgctggaaccccaggacaatgtttctattctttatttctagaTACAACAGACAACAGCTCAGCCAGATTTACTCCAGGAGCAAACAGGTGGACTCTTCAAACTACATGCCTTACCTCTTTTGGAATGTGGGCTGCCAACTTGTTGCCCTCAACTTCCAGAGTCTGggtgggaatatgtttgcttttggtctctctaacaatctacatttaattttg Alignment from CESAR aTACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGg cctcctggctgctggaaccccaggacaatgtttctattctttatttctagaTACAACAGACAACAGCTCAGCCAGATTTACTCCAGGAGCAAACAGGTGGACTCTTCAAACTACATGCCTTACCTCTTTTGGAATGTGGGCTGCCAACTTGTTGCCCTCAACTTCCAGAGTCTGggtgggaatatgtttgcttttggtctctctaacaatctacatttaattttg Alignment from Spaln_aa2Genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG cctcctggctgctggaaccccaggacaatgtttctattctttatttctagATACAACAGACAACAGCTCAGCCAGATTTACTCCAGGAGCAAACAGGTGGACTCTTCAAACTACATGCCTTACCTCTTTTGGAATGTGGGCTGCCAACTTGTTGCCCTCAACTTCCAGAGTCTGGgtgggaatatgtttgcttttggtctctctaacaatctacatttaattttg Alignment from Spaln_nt2Genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG cctcctggctgctggaaccccaggacaatgtttctattctttatttctagATACAACAGACAACAGCTCAGCCAGATTTACTCCAGGAGCAAACAGGTGGACTCTTCAAACTACATGCCTTACCTCTTTTGGAATGTGGGCTGCCAACTTGTTGCCCTCAACTTCCAGAGTCTGGgtgggaatatgtttgcttttggtctctctaacaatctacatttaattttg Alignment from Pairagon ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG cctcctggctgctggaaccccaggacaatgtttctattctttatttctagATACAACAGACAACAGCTCAGCCAGATTTACTCCAGGAGCAAACAGGTGGACTCTTCAAACTACATGCCTTACCTCTTTTGGAATGTGGGCTGCCAACTTGTTGCCCTCAACTTCCAGAGTCTGGgtgggaatatgtttgcttttggtctctctaacaatctacatttaattttg Alignment from Exonerate_protein2genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG cctcctggctgctggaaccccaggacaatgtttctattctttatttctagATACAACAGACAACAGCTCAGCCAGATTTACTCCAGGAGCAAACAGGTGGACTCTTCAAACTACATGCCTTACCTCTTTTGGAATGTGGGCTGCCAACTTGTTGCCCTCAACTTCCAGAGTCTGGgtgggaatatgtttgcttttggtctctctaacaatctacatttaattttg Alignment from Exonerate_coding2genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG cctcctggctgctggaaccccaggacaatgtttctattctttatttctagATACAACAGACAACAGCTCAGCCAGATTTACTCCAGGAGCAAACAGGTGGACTCTTCAAACTACATGCCTTACCTCTTTTGGAATGTGGGCTGCCAACTTGTTGCCCTCAACTTCCAGAGTCTGGgtgggaatatgtttgcttttggtctctctaacaatctacatttaattttg Alignment from GeneWise ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG cctcctggctgctggaaccccaggacaatgtttctattctttatttctagATACAACAGACAACAGCTCAGCCAGATTTACTCCAGGAGCAAACAGGTGGACTCTTCAAACTACATGCCTTACCTCTTTTGGAATGTGGGCTGCCAACTTGTTGCCCTCAACTTCCAGAGTCTGGgtgggaatatgtttgcttttggtctctctaacaatctacatttaattttg #### Plcb3_ID1920_11 --> 2 - 2 Original Alignment cgGGCCAGCTGGCTGGACCATCATCGGTGGAGATGTACCGCCAGGCACTGCTGTGGGGCTGCCGCTGTGTGGAGCTGGATGTATGGAAGGGACGGCCACCGGAGGAAGAGCCTTTCATCACTCATGGTTTCACCATGACCACTGAGGTGCCATTGCGTGATGTGCTAGAGGCCATCGCTGAGGCAGCCTTCAAGACCTCGCCCTACCCTGTCATCCTCTCCTTTGAGAACCATGTCGACtc ttcaataggaaacccaaagccaattgtacagtgccactccctgtccctagcaGGTCAGCTAGCTGGGCCATCGTCAGTAGAGATGTACCGCCAGGCACTGCTGTGTGGCTGTTGTTGTGTGGCTCTTGATGTTTGGAAGGGGCGACCGCCTGAGGAAGAACCATTCATCACTCATGGTTTTACCATGACTACTGAGGTGCCATTGTGCGATGTGCTGGGTGCTATTGCAGAGGCAGCTTTCAAAACCTCACCCTATCCTGTCATCCTTTCTTTTGAGAATCATGTTGACtcgtaggtgggcttctggaaggatgctcctagtacatccaatcttacacact Alignment from CESAR cgGGCCAGCTGGCTGGACCATCATCGGTGGAGATGTACCGCCAGGCACTGCTGTGGGGCTGCCGCTGTGTGGAGCTGGATGTATGGAAGGGACGGCCACCGGAGGAAGAGCCTTTCATCACTCATGGTTTCACCATGACCACTGAGGTGCCATTGCGTGATGTGCTAGAGGCCATCGCTGAGGCAGCCTTCAAGACCTCGCCCTACCCTGTCATCCTCTCCTTTGAGAACCATGTCGACtc ttcaataggaaacccaaagccaattgtacagtgccactccctgtccctagcaGGTCAGCTAGCTGGGCCATCGTCAGTAGAGATGTACCGCCAGGCACTGCTGTGTGGCTGTTGTTGTGTGGCTCTTGATGTTTGGAAGGGGCGACCGCCTGAGGAAGAACCATTCATCACTCATGGTTTTACCATGACTACTGAGGTGCCATTGTGCGATGTGCTGGGTGCTATTGCAGAGGCAGCTTTCAAAACCTCACCCTATCCTGTCATCCTTTCTTTTGAGAATCATGTTGACtcgtaggtgggcttctggaaggatgctcctagtacatccaatcttacacact Alignment from Spaln_aa2Genome CGGGCCAGCTGGCTGGACCATCATCGGTGGAGATGTACCGCCAGGCACTGCTGTGGGGCTGCCGCTGTGTGGAGCTGGATGTATGGAAGGGACGGCCACCGGAGGAAGAGCCTTTCATCACTCATGGTTTCACCATGACCACTGAGGTGCCATTGCGTGATGTGCTAGAGGCCATCGCTGAGGCAGCCTTCAAGACCTCGCCCTACCCTGTCATCCTCTCCTTTGAGAACCATGTCGACTC ttcaataggaaacccaaagccaattgtacagtgccactccctgtccctagCAGGTCAGCTAGCTGGGCCATCGTCAGTAGAGATGTACCGCCAGGCACTGCTGTGTGGCTGTTGTTGTGTGGCTCTTGATGTTTGGAAGGGGCGACCGCCTGAGGAAGAACCATTCATCACTCATGGTTTTACCATGACTACTGAGGTGCCATTGTGCGATGTGCTGGGTGCTATTGCAGAGGCAGCTTTCAAAACCTCACCCTATCCTGTCATCCTTTCTTTTGAGAATCATGTTGACTCgtaggtgggcttctggaaggatgctcctagtacatccaatcttacacact Alignment from Spaln_nt2Genome CGGGCCAGCTGGCTGGACCATCATCGGTGGAGATGTACCGCCAGGCACTGCTGTGGGGCTGCCGCTGTGTGGAGCTGGATGTATGGAAGGGACGGCCACCGGAGGAAGAGCCTTTCATCACTCATGGTTTCACCATGACCACTGAGGTGCCATTGCGTGATGTGCTAGAGGCCATCGCTGAGGCAGCCTTCAAGACCTCGCCCTACCCTGTCATCCTCTCCTTTGAGAACCATGTCGACTC ttcaataggaaacccaaagccaattgtacagtgccactccctgtccctagCAGGTCAGCTAGCTGGGCCATCGTCAGTAGAGATGTACCGCCAGGCACTGCTGTGTGGCTGTTGTTGTGTGGCTCTTGATGTTTGGAAGGGGCGACCGCCTGAGGAAGAACCATTCATCACTCATGGTTTTACCATGACTACTGAGGTGCCATTGTGCGATGTGCTGGGTGCTATTGCAGAGGCAGCTTTCAAAACCTCACCCTATCCTGTCATCCTTTCTTTTGAGAATCATGTTGACTCgtaggtgggcttctggaaggatgctcctagtacatccaatcttacacact Alignment from Pairagon CGGGCCAGCTGGCTGGACCATCATCGGTGGAGATGTACCGCCAGGCACTGCTGTGGGGCTGCCGCTGTGTGGAGCTGGATGTATGGAAGGGACGGCCACCGGAGGAAGAGCCTTTCATCACTCATGGTTTCACCATGACCACTGAGGTGCCATTGCGTGATGTGCTAGAGGCCATCGCTGAGGCAGCCTTCAAGACCTCGCCCTACCCTGTCATCCTCTCCTTTGAGAACCATGTCGACTC ttcaataggaaacccaaagccaattgtacagtgccactccctgtccctagCAGGTCAGCTAGCTGGGCCATCGTCAGTAGAGATGTACCGCCAGGCACTGCTGTGTGGCTGTTGTTGTGTGGCTCTTGATGTTTGGAAGGGGCGACCGCCTGAGGAAGAACCATTCATCACTCATGGTTTTACCATGACTACTGAGGTGCCATTGTGCGATGTGCTGGGTGCTATTGCAGAGGCAGCTTTCAAAACCTCACCCTATCCTGTCATCCTTTCTTTTGAGAATCATGTTGACTCgtaggtgggcttctggaaggatgctcctagtacatccaatcttacacact Alignment from Exonerate_protein2genome CGGGCCAGCTGGCTGGACCATCATCGGTGGAGATGTACCGCCAGGCACTGCTGTGGGGCTGCCGCTGTGTGGAGCTGGATGTATGGAAGGGACGGCCACCGGAGGAAGAGCCTTTCATCACTCATGGTTTCACCATGACCACTGAGGTGCCATTGCGTGATGTGCTAGAGGCCATCGCTGAGGCAGCCTTCAAGACCTCGCCCTACCCTGTCATCCTCTCCTTTGAGAACCATGTCGACTC ttcaataggaaacccaaagccaattgtacagtgccactccctgtccctagCAGGTCAGCTAGCTGGGCCATCGTCAGTAGAGATGTACCGCCAGGCACTGCTGTGTGGCTGTTGTTGTGTGGCTCTTGATGTTTGGAAGGGGCGACCGCCTGAGGAAGAACCATTCATCACTCATGGTTTTACCATGACTACTGAGGTGCCATTGTGCGATGTGCTGGGTGCTATTGCAGAGGCAGCTTTCAAAACCTCACCCTATCCTGTCATCCTTTCTTTTGAGAATCATGTTGACTCgtaggtgggcttctggaaggatgctcctagtacatccaatcttacacact Alignment from Exonerate_coding2genome CGGGCCAGCTGGCTGGACCATCATCGGTGGAGATGTACCGCCAGGCACTGCTGTGGGGCTGCCGCTGTGTGGAGCTGGATGTATGGAAGGGACGGCCACCGGAGGAAGAGCCTTTCATCACTCATGGTTTCACCATGACCACTGAGGTGCCATTGCGTGATGTGCTAGAGGCCATCGCTGAGGCAGCCTTCAAGACCTCGCCCTACCCTGTCATCCTCTCCTTTGAGAACCATGTCGACTC ttcaataggaaacccaaagccaattgtacagtgccactccctgtccctagCAGGTCAGCTAGCTGGGCCATCGTCAGTAGAGATGTACCGCCAGGCACTGCTGTGTGGCTGTTGTTGTGTGGCTCTTGATGTTTGGAAGGGGCGACCGCCTGAGGAAGAACCATTCATCACTCATGGTTTTACCATGACTACTGAGGTGCCATTGTGCGATGTGCTGGGTGCTATTGCAGAGGCAGCTTTCAAAACCTCACCCTATCCTGTCATCCTTTCTTTTGAGAATCATGTTGACTCgtaggtgggcttctggaaggatgctcctagtacatccaatcttacacact Alignment from GeneWise CGGGCCAGCTGGCTGGACCATCATCGGTGGAGATGTACCGCCAGGCACTGCTGTGGGGCTGCCGCTGTGTGGAGCTGGATGTATGGAAGGGACGGCCACCGGAGGAAGAGCCTTTCATCACTCATGGTTTCACCATGACCACTGAGGTGCCATTGCGTGATGTGCTAGAGGCCATCGCTGAGGCAGCCTTCAAGACCTCGCCCTACCCTGTCATCCTCTCCTTTGAGAACCATGTCGACTC ttcaataggaaacccaaagccaattgtacagtgccactccctgtccctagCAGGTCAGCTAGCTGGGCCATCGTCAGTAGAGATGTACCGCCAGGCACTGCTGTGTGGCTGTTGTTGTGTGGCTCTTGATGTTTGGAAGGGGCGACCGCCTGAGGAAGAACCATTCATCACTCATGGTTTTACCATGACTACTGAGGTGCCATTGTGCGATGTGCTGGGTGCTATTGCAGAGGCAGCTTTCAAAACCTCACCCTATCCTGTCATCCTTTCTTTTGAGAATCATGTTGACTCgtaggtgggcttctggaaggatgctcctagtacatccaatcttacacact #### Plcb3_ID1922_9 --> 1 - 1 Original Alignment aGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAAC------CAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCg agtagtaaggagctaccatcaggagtgttcaccttgttctggtgtcctagaGGCATGAAGGGCAAGCCTTACCTT---CTGGAGCAGCTTATGGACTTTGTGAACCAACAAGAGAAGCAGAGAGACCCGAGACTG---------------------------TCCTCACAAGCTCGTCTACTTATTGAGGAGTATGAGACGAACAAACAGTTTCTGGAGTGTggtatggccatacaggtaagatagcagtgcgggtgggatctgctttgctta Alignment from CESAR aGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAG------AAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCg agtagtaaggagctaccatcaggagtgttcaccttgttctggtgtcctagaGGCATGAAGGGCAAGCCTTACCTT---CTGGAGCAGCTTATGGACTTTGTGAACCAACAAGAGAAGCAGAGAGACCCGAGACTG---------------------------TCCTCACAAGCTCGTCTACTTATTGAGGAGTATGAGACGAACAAACAGTTTCTGGAGTGTggtatggccatacaggtaagatagcagtgcgggtgggatctgctttgctta Alignment from Spaln_aa2Genome AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAG------AAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG agtagtaaggagctaccatcaggagtgttcaccttgttctggtgtcctagAGGCATGAAGGGCAAGCCTTACCTT---CTGGAGCAGCTTATGGACTTTGTGAACCAACAAGAGAAGCAGAGAGACCCGAGACTG---------------------------TCCTCACAAGCTCGTCTACTTATTGAGGAGTATGAGACGAACAAACAGTTTCTGGAGTGTGgtatggccatacaggtaagatagcagtgcgggtgggatctgctttgctta Alignment from Spaln_nt2Genome AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACC------AGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG agtagtaaggagctaccatcaggagtgttcaccttgttctggtgtcctagAGGCATGAAGGGCAAGCCTTACCT---TCTGGAGCAGCTTATGGACTTTGTGAACCAACAAGAGAAGCAGAGAGACCCGAGACT---------------------------GTCCTCACAAGCTCGTCTACTTATTGAGGAGTATGAGACGAACAAACAGTTTCTGGAGTGTGgtatggccatacaggtaagatagcagtgcgggtgggatctgctttgctta Alignment from Pairagon AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACC------AGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG agtagtaaggagctaccatcaggagtgttcaccttgttctggtgtcctagAGGCATGAAGGGCAAGCCTTACCT---TCTGGAGCAGCTTATGGACTTTGTGAACCAACAAGAGAAGCAGAGAGACCCGAGACT---------------------------GTCCTCACAAGCTCGTCTACTTATTGAGGAGTATGAGACGAACAAACAGTTTCTGGAGTGTGgtatggccatacaggtaagatagcagtgcgggtgggatctgctttgctta Alignment from Exonerate_protein2genome CCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG agtagtaaggagctaccatcaggagtgttcaccttgttctggtgtcctagaggcatgaagggcaagccttaccttctggagcagcttatggactttgtgaaccaacaagagaagcagagagacCCGAGACTGTCCTCACAAGCTCGTCTACTTATTGAGGAGTATGAGACGAACAAACAGTTTCTGGAGTGTGgtatggccatacaggtaagatagcagtgcgggtgggatctgctttgctta Alignment from Exonerate_coding2genome CCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG agtagtaaggagctaccatcaggagtgttcaccttgttctggtgtcctagaggcatgaagggcaagccttaccttctggagcagcttatggactttgtgaaccaacaagagaagcagagagacCCGAGACTGTCCTCACAAGCTCGTCTACTTATTGAGGAGTATGAGACGAACAAACAGTTTCTGGAGTGTGgtatggccatacaggtaagatagcagtgcgggtgggatctgctttgctta Alignment from GeneWise AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAG------AAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG agtagtaaggagctaccatcaggagtgttcaccttgttctggtgtcctagAGGCATGAAGGGCAAGCCTTACCTT---CTGGAGCAGCTTATGGACTTTGTGAACCAACAAGAGAAGCAGAGAGACCCGAGACTG---------------------------TCCTCACAAGCTCGTCTACTTATTGAGGAGTATGAGACGAACAAACAGTTTCTGGAGTGTGgtatggccatacaggtaagatagcagtgcgggtgggatctgctttgctta #### Plcb3_ID1924_7 --> 1 - 2 Original Alignment cATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAgt ttctgctgcctgtctaaccatttgaactttggtggtctttttccttgcagcATTCTGAAGATGTTCTCAGCAGATAAGAAGCGCGTAGAGAATGCGCTGGAATCCTGTGGTCTCAACTTGAACCGGgtgtgtgggtcaggaccagggtgccagttgggtcagattggcttttgcaatc Alignment from CESAR cATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAgt ttctgctgcctgtctaaccatttgaactttggtggtctttttccttgcagcATTCTGAAGATGTTCTCAGCAGATAAGAAGCGCGTAGAGAATGCGCTGGAATCCTGTGGTCTCAACTTGAACCGGgtgtgtgggtcaggaccagggtgccagttgggtcagattggcttttgcaatc Alignment from Spaln_aa2Genome CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT ttctgctgcctgtctaaccatttgaactttggtggtctttttccttgcagCATTCTGAAGATGTTCTCAGCAGATAAGAAGCGCGTAGAGAATGCGCTGGAATCCTGTGGTCTCAACTTGAACCGGGTgtgtgggtcaggaccagggtgccagttgggtcagattggcttttgcaatc Alignment from Spaln_nt2Genome CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT ttctgctgcctgtctaaccatttgaactttggtggtctttttccttgcagCATTCTGAAGATGTTCTCAGCAGATAAGAAGCGCGTAGAGAATGCGCTGGAATCCTGTGGTCTCAACTTGAACCGGGTgtgtgggtcaggaccagggtgccagttgggtcagattggcttttgcaatc Alignment from Pairagon CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT ttctgctgcctgtctaaccatttgaactttggtggtctttttccttgcagCATTCTGAAGATGTTCTCAGCAGATAAGAAGCGCGTAGAGAATGCGCTGGAATCCTGTGGTCTCAACTTGAACCGGGTgtgtgggtcaggaccagggtgccagttgggtcagattggcttttgcaatc Alignment from Exonerate_protein2genome CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT ttctgctgcctgtctaaccatttgaactttggtggtctttttccttgcagCATTCTGAAGATGTTCTCAGCAGATAAGAAGCGCGTAGAGAATGCGCTGGAATCCTGTGGTCTCAACTTGAACCGGGTgtgtgggtcaggaccagggtgccagttgggtcagattggcttttgcaatc Alignment from Exonerate_coding2genome CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGTTG ttctgctgcctgtctaaccatttgaactttggtggtctttttccttgcagCATTCTGAAGATGTTCTCAGCAGATAAGAAGCGCGTAGAGAATGCGCTGGAATCCTGTGGTCTCAACTTGAACCGG----gtgtgtgggtcaggaccagggtgccagttgggtcagattggcttttgcaatc Alignment from GeneWise CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT ttctgctgcctgtctaaccatttgaactttggtggtctttttccttgcagCATTCTGAAGATGTTCTCAGCAGATAAGAAGCGCGTAGAGAATGCGCTGGAATCCTGTGGTCTCAACTTGAACCGGGTgtgtgggtcaggaccagggtgccagttgggtcagattggcttttgcaatc #### Plce1_ID7613_3 --> 2 - 0 Original Alignment aaCGCCAACTGGGCACCTCTATGGCCAATTCCAATCCTGTTCCTTCAAGTTCAGCTGGAATCAGCAAGGAGCTGATTGATCTCCAGCCCCTCATTCAGTTCCCGGAGGAAGTAGCCAGCATCTTAACAGAGCAGGAACAGAACATTTACCGCAGGGTCCTGCCCATGGACTACCTCTGCTTCTTAACCCGGGACTTGAGTTCACCTGAATGCCAGAGATCACTGCCCCGTCTCAAAGCATCCATCTCAGAATCCATCCTCACGTCTCAAAGTGGAGAACACAATGCCCTTGAAGACCTTGTGATGAGATTTAACGAG agctttatgagcgtagacacaggctagcgtgctcttctctctcgttgtagaaCTCCAACTGGGGACCTCTATGGCCAATTCAAATCCTGTTTCTTCAAGTTCGGCTGGAGTCAGCAAAGAGTTGATTGATCTTCAACCCCTCATTCAGTTCCCAAAGGAGGTAGCCAGTATATTAACAGAGCAAGAACAGAACATTTACCGTAAAGTCTTGCCAATGGACTACCTCTGCTTCCTTACCCATGACTTAAGTTCACCTGAATGCCAGAGGTCACTGCCTTGTCTCAAGGCCTCCATCTCTGAATCCATACTCACATCTCAAAGTGGAGAACATAATGCCCTTGAAGATCTGGTGATGAGATTTAACAAGgtaagtttggtgggaatgacatggatcgtgactgagcgaccctatagtgt Alignment from CESAR aaCGCCAACTGGGCACCTCTATGGCCAATTCCAATCCTGTTCCTTCAAGTTCAGCTGGAATCAGCAAGGAGCTGATTGATCTCCAGCCCCTCATTCAGTTCCCGGAGGAAGTAGCCAGCATCTTAACAGAGCAGGAACAGAACATTTACCGCAGGGTCCTGCCCATGGACTACCTCTGCTTCTTAACCCGGGACTTGAGTTCACCTGAATGCCAGAGATCACTGCCCCGTCTCAAAGCATCCATCTCAGAATCCATCCTCACGTCTCAAAGTGGAGAACACAATGCCCTTGAAGACCTTGTGATGAGATTTAACGAG agctttatgagcgtagacacaggctagcgtgctcttctctctcgttgtagaaCTCCAACTGGGGACCTCTATGGCCAATTCAAATCCTGTTTCTTCAAGTTCGGCTGGAGTCAGCAAAGAGTTGATTGATCTTCAACCCCTCATTCAGTTCCCAAAGGAGGTAGCCAGTATATTAACAGAGCAAGAACAGAACATTTACCGTAAAGTCTTGCCAATGGACTACCTCTGCTTCCTTACCCATGACTTAAGTTCACCTGAATGCCAGAGGTCACTGCCTTGTCTCAAGGCCTCCATCTCTGAATCCATACTCACATCTCAAAGTGGAGAACATAATGCCCTTGAAGATCTGGTGATGAGATTTAACAAGgtaagtttggtgggaatgacatggatcgtgactgagcgaccctatagtgt Alignment from Spaln_aa2Genome AACGCCAACTGGGCACCTCTATGGCCAATTCCAATCCTGTTCCTTCAAGTTCAGCTGGAATCAGCAAGGAGCTGATTGATCTCCAGCCCCTCATTCAGTTCCCGGAGGAAGTAGCCAGCATCTTAACAGAGCAGGAACAGAACATTTACCGCAGGGTCCTGCCCATGGACTACCTCTGCTTCTTAACCCGGGACTTGAGTTCACCTGAATGCCAGAGATCACTGCCCCGTCTCAAAGCATCCATCTCAGAATCCATCCTCACGTCTCAAAGTGGAGAACACAATGCCCTTGAAGACCTTGTGATGAGATTTAACGAG agctttatgagcgtagacacaggctagcgtgctcttctctctcgttgtagAACTCCAACTGGGGACCTCTATGGCCAATTCAAATCCTGTTTCTTCAAGTTCGGCTGGAGTCAGCAAAGAGTTGATTGATCTTCAACCCCTCATTCAGTTCCCAAAGGAGGTAGCCAGTATATTAACAGAGCAAGAACAGAACATTTACCGTAAAGTCTTGCCAATGGACTACCTCTGCTTCCTTACCCATGACTTAAGTTCACCTGAATGCCAGAGGTCACTGCCTTGTCTCAAGGCCTCCATCTCTGAATCCATACTCACATCTCAAAGTGGAGAACATAATGCCCTTGAAGATCTGGTGATGAGATTTAACAAGgtaagtttggtgggaatgacatggatcgtgactgagcgaccctatagtgt Alignment from Spaln_nt2Genome AACGCCAACTGGGCACCTCTATGGCCAATTCCAATCCTGTTCCTTCAAGTTCAGCTGGAATCAGCAAGGAGCTGATTGATCTCCAGCCCCTCATTCAGTTCCCGGAGGAAGTAGCCAGCATCTTAACAGAGCAGGAACAGAACATTTACCGCAGGGTCCTGCCCATGGACTACCTCTGCTTCTTAACCCGGGACTTGAGTTCACCTGAATGCCAGAGATCACTGCCCCGTCTCAAAGCATCCATCTCAGAATCCATCCTCACGTCTCAAAGTGGAGAACACAATGCCCTTGAAGACCTTGTGATGAGATTTAACGAG agctttatgagcgtagacacaggctagcgtgctcttctctctcgttgtagAACTCCAACTGGGGACCTCTATGGCCAATTCAAATCCTGTTTCTTCAAGTTCGGCTGGAGTCAGCAAAGAGTTGATTGATCTTCAACCCCTCATTCAGTTCCCAAAGGAGGTAGCCAGTATATTAACAGAGCAAGAACAGAACATTTACCGTAAAGTCTTGCCAATGGACTACCTCTGCTTCCTTACCCATGACTTAAGTTCACCTGAATGCCAGAGGTCACTGCCTTGTCTCAAGGCCTCCATCTCTGAATCCATACTCACATCTCAAAGTGGAGAACATAATGCCCTTGAAGATCTGGTGATGAGATTTAACAAGgtaagtttggtgggaatgacatggatcgtgactgagcgaccctatagtgt Alignment from Pairagon AACGCCAACTGGGCACCTCTATGGCCAATTCCAATCCTGTTCCTTCAAGTTCAGCTGGAATCAGCAAGGAGCTGATTGATCTCCAGCCCCTCATTCAGTTCCCGGAGGAAGTAGCCAGCATCTTAACAGAGCAGGAACAGAACATTTACCGCAGGGTCCTGCCCATGGACTACCTCTGCTTCTTAACCCGGGACTTGAGTTCACCTGAATGCCAGAGATCACTGCCCCGTCTCAAAGCATCCATCTCAGAATCCATCCTCACGTCTCAAAGTGGAGAACACAATGCCCTTGAAGACCTTGTGATGAGATTTAACGAG agctttatgagcgtagacacaggctagcgtgctcttctctctcgttgtagAACTCCAACTGGGGACCTCTATGGCCAATTCAAATCCTGTTTCTTCAAGTTCGGCTGGAGTCAGCAAAGAGTTGATTGATCTTCAACCCCTCATTCAGTTCCCAAAGGAGGTAGCCAGTATATTAACAGAGCAAGAACAGAACATTTACCGTAAAGTCTTGCCAATGGACTACCTCTGCTTCCTTACCCATGACTTAAGTTCACCTGAATGCCAGAGGTCACTGCCTTGTCTCAAGGCCTCCATCTCTGAATCCATACTCACATCTCAAAGTGGAGAACATAATGCCCTTGAAGATCTGGTGATGAGATTTAACAAGgtaagtttggtgggaatgacatggatcgtgactgagcgaccctatagtgt Alignment from Exonerate_protein2genome AACGCCAACTGGGCACCTCTATGGCCAATTCCAATCCTGTTCCTTCAAGTTCAGCTGGAATCAGCAAGGAGCTGATTGATCTCCAGCCCCTCATTCAGTTCCCGGAGGAAGTAGCCAGCATCTTAACAGAGCAGGAACAGAACATTTACCGCAGGGTCCTGCCCATGGACTACCTCTGCTTCTTAACCCGGGACTTGAGTTCACCTGAATGCCAGAGATCACTGCCCCGTCTCAAAGCATCCATCTCAGAATCCATCCTCACGTCTCAAAGTGGAGAACACAATGCCCTTGAAGACCTTGTGATGAGATTTAACGAG agctttatgagcgtagacacaggctagcgtgctcttctctctcgttgtagAACTCCAACTGGGGACCTCTATGGCCAATTCAAATCCTGTTTCTTCAAGTTCGGCTGGAGTCAGCAAAGAGTTGATTGATCTTCAACCCCTCATTCAGTTCCCAAAGGAGGTAGCCAGTATATTAACAGAGCAAGAACAGAACATTTACCGTAAAGTCTTGCCAATGGACTACCTCTGCTTCCTTACCCATGACTTAAGTTCACCTGAATGCCAGAGGTCACTGCCTTGTCTCAAGGCCTCCATCTCTGAATCCATACTCACATCTCAAAGTGGAGAACATAATGCCCTTGAAGATCTGGTGATGAGATTTAACAAGgtaagtttggtgggaatgacatggatcgtgactgagcgaccctatagtgt Alignment from Exonerate_coding2genome AACGCCAACTGGGCACCTCTATGGCCAATTCCAATCCTGTTCCTTCAAGTTCAGCTGGAATCAGCAAGGAGCTGATTGATCTCCAGCCCCTCATTCAGTTCCCGGAGGAAGTAGCCAGCATCTTAACAGAGCAGGAACAGAACATTTACCGCAGGGTCCTGCCCATGGACTACCTCTGCTTCTTAACCCGGGACTTGAGTTCACCTGAATGCCAGAGATCACTGCCCCGTCTCAAAGCATCCATCTCAGAATCCATCCTCACGTCTCAAAGTGGAGAACACAATGCCCTTGAAGACCTTGTGATGAGATTTAACGAG agctttatgagcgtagacacaggctagcgtgctcttctctctcgttgtagAACTCCAACTGGGGACCTCTATGGCCAATTCAAATCCTGTTTCTTCAAGTTCGGCTGGAGTCAGCAAAGAGTTGATTGATCTTCAACCCCTCATTCAGTTCCCAAAGGAGGTAGCCAGTATATTAACAGAGCAAGAACAGAACATTTACCGTAAAGTCTTGCCAATGGACTACCTCTGCTTCCTTACCCATGACTTAAGTTCACCTGAATGCCAGAGGTCACTGCCTTGTCTCAAGGCCTCCATCTCTGAATCCATACTCACATCTCAAAGTGGAGAACATAATGCCCTTGAAGATCTGGTGATGAGATTTAACAAGgtaagtttggtgggaatgacatggatcgtgactgagcgaccctatagtgt Alignment from GeneWise AACGCCAACTGGGCACCTCTATGGCCAATTCCAATCCTGTTCCTTCAAGTTCAGCTGGAATCAGCAAGGAGCTGATTGATCTCCAGCCCCTCATTCAGTTCCCGGAGGAAGTAGCCAGCATCTTAACAGAGCAGGAACAGAACATTTACCGCAGGGTCCTGCCCATGGACTACCTCTGCTTCTTAACCCGGGACTTGAGTTCACCTGAATGCCAGAGATCACTGCCCCGTCTCAAAGCATCCATCTCAGAATCCATCCTCACGTCTCAAAGTGGAGAACACAATGCCCTTGAAGACCTTGTGATGAGATTTAACGAG agctttatgagcgtagacacaggctagcgtgctcttctctctcgttgtagAACTCCAACTGGGGACCTCTATGGCCAATTCAAATCCTGTTTCTTCAAGTTCGGCTGGAGTCAGCAAAGAGTTGATTGATCTTCAACCCCTCATTCAGTTCCCAAAGGAGGTAGCCAGTATATTAACAGAGCAAGAACAGAACATTTACCGTAAAGTCTTGCCAATGGACTACCTCTGCTTCCTTACCCATGACTTAAGTTCACCTGAATGCCAGAGGTCACTGCCTTGTCTCAAGGCCTCCATCTCTGAATCCATACTCACATCTCAAAGTGGAGAACATAATGCCCTTGAAGATCTGGTGATGAGATTTAACAAGgtaagtttggtgggaatgacatggatcgtgactgagcgaccctatagtgt #### Plce1_ID7619_6 --> 0 - 2 Original Alignment TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGca tagtcacatgaggagctgcaacactgatcagtggctgctgttcttcacagTTGGTAGCTGATTACAGTGGACAAGATACCATTTTACAGCGAGTGGGACAAATTGGCTTAAAAAATGCTGAGAAAGAGCTTACAGTAAATTCTATCCTACAGGTTATCCGGAGTTGCAGCCGAAGGTTGGAGATGGAAGAAGAAGAAAGTGTTAGTGAAGGAACTGGTTCTAGAAAAAATTCCCTGCAGGACAAAGCCAGATGGcagtatggcaaagcataagtgggttagtagctaggtaatcactagatgtccc Alignment from CESAR TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGca tagtcacatgaggagctgcaacactgatcagtggctgctgttcttcacagTTGGTAGCTGATTACAGTGGACAAGATACCATTTTACAGCGAGTGGGACAAATTGGCTTAAAAAATGCTGAGAAAGAGCTTACAGTAAATTCTATCCTACAGGTTATCCGGAGTTGCAGCCGAAGGTTGGAGATGGAAGAAGAAGAAAGTGTTAGTGAAGGAACTGGTTCTAGAAAAAATTCCCTGCAGGACAAAGCCAGATGGcagtatggcaaagcataagtgggttagtagctaggtaatcactagatgtccc Alignment from Spaln_aa2Genome TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGCA tagtcacatgaggagctgcaacactgatcagtggctgctgttcttcacagTTGGTAGCTGATTACAGTGGACAAGATACCATTTTACAGCGAGTGGGACAAATTGGCTTAAAAAATGCTGAGAAAGAGCTTACAGTAAATTCTATCCTACAGGTTATCCGGAGTTGCAGCCGAAGGTTGGAGATGGAAGAAGAAGAAAGTGTTAGTGAAGGAACTGGTTCTAGAAAAAATTCCCTGCAGGACAAAGCCAGATGGCAgtatggcaaagcataagtgggttagtagctaggtaatcactagatgtccc Alignment from Spaln_nt2Genome AGTTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGCA tagtcacatgaggagctgcaacactgatcagtggctgctgttcttcacAGTTGGTAGCTGATTACAGTGGACAAGATACCATTTTACAGCGAGTGGGACAAATTGGCTTAAAAAATGCTGAGAAAGAGCTTACAGTAAATTCTATCCTACAGGTTATCCGGAGTTGCAGCCGAAGGTTGGAGATGGAAGAAGAAGAAAGTGTTAGTGAAGGAACTGGTTCTAGAAAAAATTCCCTGCAGGACAAAGCCAGATGGCAgtatggcaaagcataagtgggttagtagctaggtaatcactagatgtccc Alignment from Pairagon TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGCA tagtcacatgaggagctgcaacactgatcagtggctgctgttcttcacagTTGGTAGCTGATTACAGTGGACAAGATACCATTTTACAGCGAGTGGGACAAATTGGCTTAAAAAATGCTGAGAAAGAGCTTACAGTAAATTCTATCCTACAGGTTATCCGGAGTTGCAGCCGAAGGTTGGAGATGGAAGAAGAAGAAAGTGTTAGTGAAGGAACTGGTTCTAGAAAAAATTCCCTGCAGGACAAAGCCAGATGGCAgtatggcaaagcataagtgggttagtagctaggtaatcactagatgtccc Alignment from Exonerate_protein2genome TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGCA tagtcacatgaggagctgcaacactgatcagtggctgctgttcttcacagTTGGTAGCTGATTACAGTGGACAAGATACCATTTTACAGCGAGTGGGACAAATTGGCTTAAAAAATGCTGAGAAAGAGCTTACAGTAAATTCTATCCTACAGGTTATCCGGAGTTGCAGCCGAAGGTTGGAGATGGAAGAAGAAGAAAGTGTTAGTGAAGGAACTGGTTCTAGAAAAAATTCCCTGCAGGACAAAGCCAGATGGCAgtatggcaaagcataagtgggttagtagctaggtaatcactagatgtccc Alignment from Exonerate_coding2genome TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGCA tagtcacatgaggagctgcaacactgatcagtggctgctgttcttcacagTTGGTAGCTGATTACAGTGGACAAGATACCATTTTACAGCGAGTGGGACAAATTGGCTTAAAAAATGCTGAGAAAGAGCTTACAGTAAATTCTATCCTACAGGTTATCCGGAGTTGCAGCCGAAGGTTGGAGATGGAAGAAGAAGAAAGTGTTAGTGAAGGAACTGGTTCTAGAAAAAATTCCCTGCAGGACAAAGCCAGATGGCAgtatggcaaagcataagtgggttagtagctaggtaatcactagatgtccc Alignment from GeneWise TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGCA tagtcacatgaggagctgcaacactgatcagtggctgctgttcttcacagTTGGTAGCTGATTACAGTGGACAAGATACCATTTTACAGCGAGTGGGACAAATTGGCTTAAAAAATGCTGAGAAAGAGCTTACAGTAAATTCTATCCTACAGGTTATCCGGAGTTGCAGCCGAAGGTTGGAGATGGAAGAAGAAGAAAGTGTTAGTGAAGGAACTGGTTCTAGAAAAAATTCCCTGCAGGACAAAGCCAGATGGCAgtatggcaaagcataagtgggttagtagctaggtaatcactagatgtccc #### Plce1_ID7635_18 --> 0 - 0 Original Alignment AGTGTGTTTGGAGAAAAGCTGGTGGCTAAGTTCTTATTCGAGACCGATTTCTCAGATGACCCAATGCTTCCCTCACCTGATCAACTTAGAAGGAAAGTACTCCTTAAAAACAAGAAGCTAAAGGCCCATCAGACACCTGTCGACATCCTAAAACAAAAG acccccagtccatcccctacatcaagcaatgacctggtctgcttccacagACTGTATTTGGAGAGAAGCTGGTTGCAAAATTCCTATTTGAAACTGACTTTTCTGATGATCCAATGCTTCCTTCACCTGACCAACTTAGAAGGAAAGTACTTCTTAAAAACAAGAAACTTAAGGCCCATCAGACACCTGTTGATATCCTCAAACAAAAGgtaccccccaagcaacttgacaatcctggcaatgggactgatcagaccgc Alignment from CESAR AGTGTGTTTGGAGAAAAGCTGGTGGCTAAGTTCTTATTCGAGACCGATTTCTCAGATGACCCAATGCTTCCCTCACCTGATCAACTTAGAAGGAAAGTACTCCTTAAAAACAAGAAGCTAAAGGCCCATCAGACACCTGTCGACATCCTAAAACAAAAG acccccagtccatcccctacatcaagcaatgacctggtctgcttccacagACTGTATTTGGAGAGAAGCTGGTTGCAAAATTCCTATTTGAAACTGACTTTTCTGATGATCCAATGCTTCCTTCACCTGACCAACTTAGAAGGAAAGTACTTCTTAAAAACAAGAAACTTAAGGCCCATCAGACACCTGTTGATATCCTCAAACAAAAGgtaccccccaagcaacttgacaatcctggcaatgggactgatcagaccgc Alignment from Spaln_aa2Genome AGTGTGTTTGGAGAAAAGCTGGTGGCTAAGTTCTTATTCGAGACCGATTTCTCAGATGACCCAATGCTTCCCTCACCTGATCAACTTAGAAGGAAAGTACTCCTTAAAAACAAGAAGCTAAAGGCCCATCAGACACCTGTCGACATCCTAAAACAAAAG acccccagtccatcccctacatcaagcaatgacctggtctgcttccacagACTGTATTTGGAGAGAAGCTGGTTGCAAAATTCCTATTTGAAACTGACTTTTCTGATGATCCAATGCTTCCTTCACCTGACCAACTTAGAAGGAAAGTACTTCTTAAAAACAAGAAACTTAAGGCCCATCAGACACCTGTTGATATCCTCAAACAAAAGgtaccccccaagcaacttgacaatcctggcaatgggactgatcagaccgc Alignment from Spaln_nt2Genome AGTGTGTTTGGAGAAAAGCTGGTGGCTAAGTTCTTATTCGAGACCGATTTCTCAGATGACCCAATGCTTCCCTCACCTGATCAACTTAGAAGGAAAGTACTCCTTAAAAACAAGAAGCTAAAGGCCCATCAGACACCTGTCGACATCCTAAAACAAAAG acccccagtccatcccctacatcaagcaatgacctggtctgcttccacagACTGTATTTGGAGAGAAGCTGGTTGCAAAATTCCTATTTGAAACTGACTTTTCTGATGATCCAATGCTTCCTTCACCTGACCAACTTAGAAGGAAAGTACTTCTTAAAAACAAGAAACTTAAGGCCCATCAGACACCTGTTGATATCCTCAAACAAAAGgtaccccccaagcaacttgacaatcctggcaatgggactgatcagaccgc Alignment from Pairagon AGTGTGTTTGGAGAAAAGCTGGTGGCTAAGTTCTTATTCGAGACCGATTTCTCAGATGACCCAATGCTTCCCTCACCTGATCAACTTAGAAGGAAAGTACTCCTTAAAAACAAGAAGCTAAAGGCCCATCAGACACCTGTCGACATCCTAAAACAAAAG acccccagtccatcccctacatcaagcaatgacctggtctgcttccacagACTGTATTTGGAGAGAAGCTGGTTGCAAAATTCCTATTTGAAACTGACTTTTCTGATGATCCAATGCTTCCTTCACCTGACCAACTTAGAAGGAAAGTACTTCTTAAAAACAAGAAACTTAAGGCCCATCAGACACCTGTTGATATCCTCAAACAAAAGgtaccccccaagcaacttgacaatcctggcaatgggactgatcagaccgc Alignment from Exonerate_protein2genome AGTGTGTTTGGAGAAAAGCTGGTGGCTAAGTTCTTATTCGAGACCGATTTCTCAGATGACCCAATGCTTCCCTCACCTGATCAACTTAGAAGGAAAGTACTCCTTAAAAACAAGAAGCTAAAGGCCCATCAGACACCTGTCGACATCCTAAAACAAAAG acccccagtccatcccctacatcaagcaatgacctggtctgcttccacagACTGTATTTGGAGAGAAGCTGGTTGCAAAATTCCTATTTGAAACTGACTTTTCTGATGATCCAATGCTTCCTTCACCTGACCAACTTAGAAGGAAAGTACTTCTTAAAAACAAGAAACTTAAGGCCCATCAGACACCTGTTGATATCCTCAAACAAAAGgtaccccccaagcaacttgacaatcctggcaatgggactgatcagaccgc Alignment from Exonerate_coding2genome AGTGTGTTTGGAGAAAAGCTGGTGGCTAAGTTCTTATTCGAGACCGATTTCTCAGATGACCCAATGCTTCCCTCACCTGATCAACTTAGAAGGAAAGTACTCCTTAAAAACAAGAAGCTAAAGGCCCATCAGACACCTGTCGACATCCTAAAACAAAAG acccccagtccatcccctacatcaagcaatgacctggtctgcttccacagACTGTATTTGGAGAGAAGCTGGTTGCAAAATTCCTATTTGAAACTGACTTTTCTGATGATCCAATGCTTCCTTCACCTGACCAACTTAGAAGGAAAGTACTTCTTAAAAACAAGAAACTTAAGGCCCATCAGACACCTGTTGATATCCTCAAACAAAAGgtaccccccaagcaacttgacaatcctggcaatgggactgatcagaccgc Alignment from GeneWise AGTGTGTTTGGAGAAAAGCTGGTGGCTAAGTTCTTATTCGAGACCGATTTCTCAGATGACCCAATGCTTCCCTCACCTGATCAACTTAGAAGGAAAGTACTCCTTAAAAACAAGAAGCTAAAGGCCCATCAGACACCTGTCGACATCCTAAAACAAAAG acccccagtccatcccctacatcaagcaatgacctggtctgcttccacagACTGTATTTGGAGAGAAGCTGGTTGCAAAATTCCTATTTGAAACTGACTTTTCTGATGATCCAATGCTTCCTTCACCTGACCAACTTAGAAGGAAAGTACTTCTTAAAAACAAGAAACTTAAGGCCCATCAGACACCTGTTGATATCCTCAAACAAAAGgtaccccccaagcaacttgacaatcctggcaatgggactgatcagaccgc #### Plce1_ID7636_19 --> 0 - 1 Original Alignment GCTCATCAGTTAGCATCCATGCAAGCACAGGCTTTCACCGGTGGGAATGCCAACCCGCCACCTGCCAGTAATGAGGAAGAGGAAGATGAGGAGGATGAATATGATTACGATTACGAGTCCCTGTCCGATg ttgtgtctgtgtaaactcctgagttcaacgtgtataattttcccccccagGCCTGTCAGCTAGCACCTATGCAAGCACAGGCTTTCACTGGTGGCAATGCAAACCCACCACCTGCAAGTAATGAAGAAGAGGAAGATGATGAGGATGAATATGATTATGATTATAAGTCACTTTCTGATggtgagcgagaatagtgcaacatggagattagttgctgtatgagagaaatg Alignment from CESAR GCTCATCAGTTAGCATCCATGCAAGCACAGGCTTTCACCGGTGGGAATGCCAACCCGCCACCTGCCAGTAATGAGGAAGAGGAAGATGAGGAGGATGAATATGATTACGATTACGAGTCCCTGTCCGATg ttgtgtctgtgtaaactcctgagttcaacgtgtataattttcccccccagGCCTGTCAGCTAGCACCTATGCAAGCACAGGCTTTCACTGGTGGCAATGCAAACCCACCACCTGCAAGTAATGAAGAAGAGGAAGATGATGAGGATGAATATGATTATGATTATAAGTCACTTTCTGATggtgagcgagaatagtgcaacatggagattagttgctgtatgagagaaatg Alignment from Spaln_aa2Genome GCTCATCAGTTAGCATCCATGCAAGCACAGGCTTTCACCGGTGGGAATGCCAACCCGCCACCTGCCAGTAATGAGGAAGAGGAAGATGAGGAGGATGAATATGATTACGATTACGAGTCCCTGTCCGATG ttgtgtctgtgtaaactcctgagttcaacgtgtataattttcccccccagGCCTGTCAGCTAGCACCTATGCAAGCACAGGCTTTCACTGGTGGCAATGCAAACCCACCACCTGCAAGTAATGAAGAAGAGGAAGATGATGAGGATGAATATGATTATGATTATAAGTCACTTTCTGATGgtgagcgagaatagtgcaacatggagattagttgctgtatgagagaaatg Alignment from Spaln_nt2Genome GCTCATCAGTTAGCATCCATGCAAGCACAGGCTTTCACCGGTGGGAATGCCAACCCGCCACCTGCCAGTAATGAGGAAGAGGAAGATGAGGAGGATGAATATGATTACGATTACGAGTCCCTGTCCGATG ttgtgtctgtgtaaactcctgagttcaacgtgtataattttcccccccagGCCTGTCAGCTAGCACCTATGCAAGCACAGGCTTTCACTGGTGGCAATGCAAACCCACCACCTGCAAGTAATGAAGAAGAGGAAGATGATGAGGATGAATATGATTATGATTATAAGTCACTTTCTGATGgtgagcgagaatagtgcaacatggagattagttgctgtatgagagaaatg Alignment from Pairagon GCTCATCAGTTAGCATCCATGCAAGCACAGGCTTTCACCGGTGGGAATGCCAACCCGCCACCTGCCAGTAATGAGGAAGAGGAAGATGAGGAGGATGAATATGATTACGATTACGAGTCCCTGTCCGATG ttgtgtctgtgtaaactcctgagttcaacgtgtataattttcccccccagGCCTGTCAGCTAGCACCTATGCAAGCACAGGCTTTCACTGGTGGCAATGCAAACCCACCACCTGCAAGTAATGAAGAAGAGGAAGATGATGAGGATGAATATGATTATGATTATAAGTCACTTTCTGATGgtgagcgagaatagtgcaacatggagattagttgctgtatgagagaaatg Alignment from Exonerate_protein2genome GCTCATCAGTTAGCATCCATGCAAGCACAGGCTTTCACCGGTGGGAATGCCAACCCGCCACCTGCCAGTAATGAGGAAGAGGAAGATGAGGAGGATGAATATGATTACGATTACGAGTCCCTGTCCGATG ttgtgtctgtgtaaactcctgagttcaacgtgtataattttcccccccagGCCTGTCAGCTAGCACCTATGCAAGCACAGGCTTTCACTGGTGGCAATGCAAACCCACCACCTGCAAGTAATGAAGAAGAGGAAGATGATGAGGATGAATATGATTATGATTATAAGTCACTTTCTGATGgtgagcgagaatagtgcaacatggagattagttgctgtatgagagaaatg Alignment from Exonerate_coding2genome GCTCATCAGTTAGCATCCATGCAAGCACAGGCTTTCACCGGTGGGAATGCCAACCCGCCACCTGCCAGTAATGAGGAAGAGGAAGATGAGGAGGATGAATATGATTACGATTACGAGTCCCTGTCCGATG ttgtgtctgtgtaaactcctgagttcaacgtgtataattttcccccccagGCCTGTCAGCTAGCACCTATGCAAGCACAGGCTTTCACTGGTGGCAATGCAAACCCACCACCTGCAAGTAATGAAGAAGAGGAAGATGATGAGGATGAATATGATTATGATTATAAGTCACTTTCTGATGgtgagcgagaatagtgcaacatggagattagttgctgtatgagagaaatg Alignment from GeneWise GCTCATCAGTTAGCATCCATGCAAGCACAGGCTTTCACCGGTGGGAATGCCAACCCGCCACCTGCCAGTAATGAGGAAGAGGAAGATGAGGAGGATGAATATGATTACGATTACGAGTCCCTGTCCGATG ttgtgtctgtgtaaactcctgagttcaacgtgtataattttcccccccagGCCTGTCAGCTAGCACCTATGCAAGCACAGGCTTTCACTGGTGGCAATGCAAACCCACCACCTGCAAGTAATGAAGAAGAGGAAGATGATGAGGATGAATATGATTATGATTATAAGTCACTTTCTGATGgtgagcgagaatagtgcaacatggagattagttgctgtatgagagaaatg #### Plce1_ID7637_20 --> 2 - 0 Original Alignment acAATATTCTGGAAGACAGACCTGAGAACAAATCATGCGCTGACAAGCTTCAGTTTGAGTACAATGAAGAGGTCCCCAAGAGGATAAAGAAAGCAGACAACTCCTCTGGCAATAAGGGAAAG ggggaagtattaggtttttatatcacaatcttgtggttttttttcccaagatAATATTCTGGAAGATAGACCTGAGAATAAGTCTTGTGGTGATAAGCTCAAGTTTGAGTACAATGAAGAGGTCCCAAAGAGAGTCAAGAAAGCAGACAACTTCTCTGGCAATAAAGGTAAGgtaataggccacattcactgtatgaagttagggtagatggatgcccgttc Alignment from CESAR acAATATTCTGGAAGACAGACCTGAGAACAAATCATGCGCTGACAAGCTTCAGTTTGAGTACAATGAAGAGGTCCCCAAGAGGATAAAGAAAGCAGACAACTCCTCTGGCAATAAGGGAAAG ggggaagtattaggtttttatatcacaatcttgtggttttttttcccaagatAATATTCTGGAAGATAGACCTGAGAATAAGTCTTGTGGTGATAAGCTCAAGTTTGAGTACAATGAAGAGGTCCCAAAGAGAGTCAAGAAAGCAGACAACTTCTCTGGCAATAAAGGTAAGgtaataggccacattcactgtatgaagttagggtagatggatgcccgttc Alignment from Spaln_aa2Genome ACAATATTCTGGAAGACAGACCTGAGAACAAATCATGCGCTGACAAGCTTCAGTTTGAGTACAATGAAGAGGTCCCCAAGAGGATAAAGAAAGCAGACAACTCCTCTGGCAATAAGGGAAAG ggggaagtattaggtttttatatcacaatcttgtggttttttttcccaagATAATATTCTGGAAGATAGACCTGAGAATAAGTCTTGTGGTGATAAGCTCAAGTTTGAGTACAATGAAGAGGTCCCAAAGAGAGTCAAGAAAGCAGACAACTTCTCTGGCAATAAAGGTAAGgtaataggccacattcactgtatgaagttagggtagatggatgcccgttc Alignment from Spaln_nt2Genome ACAATATTCTGGAAGACAGACCTGAGAACAAATCATGCGCTGACAAGCTTCAGTTTGAGTACAATGAAGAGGTCCCCAAGAGGATAAAGAAAGCAGACAACTCCTCTGGCAATAAGGGAAAG ggggaagtattaggtttttatatcacaatcttgtggttttttttcccaagATAATATTCTGGAAGATAGACCTGAGAATAAGTCTTGTGGTGATAAGCTCAAGTTTGAGTACAATGAAGAGGTCCCAAAGAGAGTCAAGAAAGCAGACAACTTCTCTGGCAATAAAGGTAAGgtaataggccacattcactgtatgaagttagggtagatggatgcccgttc Alignment from Pairagon ACAATATTCTGGAAGACAGACCTGAGAACAAATCATGCGCTGACAAGCTTCAGTTTGAGTACAATGAAGAGGTCCCCAAGAGGATAAAGAAAGCAGACAACTCCTCTGGCAATAAGGGAAAG ggggaagtattaggtttttatatcacaatcttgtggttttttttcccaagATAATATTCTGGAAGATAGACCTGAGAATAAGTCTTGTGGTGATAAGCTCAAGTTTGAGTACAATGAAGAGGTCCCAAAGAGAGTCAAGAAAGCAGACAACTTCTCTGGCAATAAAGGTAAGgtaataggccacattcactgtatgaagttagggtagatggatgcccgttc Alignment from Exonerate_protein2genome ACAATATTCTGGAAGACAGACCTGAGAACAAATCATGCGCTGACAAGCTTCAGTTTGAGTACAATGAAGAGGTCCCCAAGAGGATAAAGAAAGCAGACAACTCCTCTGGCAATAAGGGAAAG ggggaagtattaggtttttatatcacaatcttgtggttttttttcccaagATAATATTCTGGAAGATAGACCTGAGAATAAGTCTTGTGGTGATAAGCTCAAGTTTGAGTACAATGAAGAGGTCCCAAAGAGAGTCAAGAAAGCAGACAACTTCTCTGGCAATAAAGGTAAGgtaataggccacattcactgtatgaagttagggtagatggatgcccgttc Alignment from Exonerate_coding2genome ACAATATTCTGGAAGACAGACCTGAGAACAAATCATGCGCTGACAAGCTTCAGTTTGAGTACAATGAAGAGGTCCCCAAGAGGATAAAGAAAGCAGACAACTCCTCTGGCAATAAGGGAAAG ggggaagtattaggtttttatatcacaatcttgtggttttttttcccaagATAATATTCTGGAAGATAGACCTGAGAATAAGTCTTGTGGTGATAAGCTCAAGTTTGAGTACAATGAAGAGGTCCCAAAGAGAGTCAAGAAAGCAGACAACTTCTCTGGCAATAAAGGTAAGgtaataggccacattcactgtatgaagttagggtagatggatgcccgttc Alignment from GeneWise ACAATATTCTGGAAGACAGACCTGAGAACAAATCATGCGCTGACAAGCTTCAGTTTGAGTACAATGAAGAGGTCCCCAAGAGGATAAAGAAAGCAGACAACTCCTCTGGCAATAAGGGAAAG ggggaagtattaggtttttatatcacaatcttgtggttttttttcccaagATAATATTCTGGAAGATAGACCTGAGAATAAGTCTTGTGGTGATAAGCTCAAGTTTGAGTACAATGAAGAGGTCCCAAAGAGAGTCAAGAAAGCAGACAACTTCTCTGGCAATAAAGGTAAGgtaataggccacattcactgtatgaagttagggtagatggatgcccgttc #### Plce1_ID7644_26 --> 2 - 0 Original Alignment gaTATCGACATCTTCAGCTGCGGAACCTCCACAATGAAATCTTGGAAATCTCTAGCTTATTCATAAACAGCAGAAGGATGGAAGAAAACCCCTCTGGCAGTTCCATGCCAGCCTCGTTG gttgcaccttgagccttgtttataggctgtcctgacgcctgttcccccaggaTATCGACATCTTCAGCTCCGGAATCTCCACAAAGAAATCCTGGAAATTTCCAGACTATTCATTAACAGCAGAAGAATGGAAGAAAACCCCTCTGGCAGCTCTATGCCAGCCTCATTGgtaaataagtccagcttttatccagaaccacttataatatcactcatggt Alignment from CESAR gaTATCGACATCTTCAGCTGCGGAACCTCCACAATGAAATCTTGGAAATCTCTAGCTTATTCATAAACAGCAGAAGGATGGAAGAAAACCCCTCTGGCAGTTCCATGCCAGCCTCGTTG gttgcaccttgagccttgtttataggctgtcctgacgcctgttcccccaggaTATCGACATCTTCAGCTCCGGAATCTCCACAAAGAAATCCTGGAAATTTCCAGACTATTCATTAACAGCAGAAGAATGGAAGAAAACCCCTCTGGCAGCTCTATGCCAGCCTCATTGgtaaataagtccagcttttatccagaaccacttataatatcactcatggt Alignment from Spaln_aa2Genome GATATCGACATCTTCAGCTGCGGAACCTCCACAATGAAATCTTGGAAATCTCTAGCTTATTCATAAACAGCAGAAGGATGGAAGAAAACCCCTCTGGCAGTTCCATGCCAGCCTCGTTG gttgcaccttgagccttgtttataggctgtcctgacgcctgttcccccagGATATCGACATCTTCAGCTCCGGAATCTCCACAAAGAAATCCTGGAAATTTCCAGACTATTCATTAACAGCAGAAGAATGGAAGAAAACCCCTCTGGCAGCTCTATGCCAGCCTCATTGgtaaataagtccagcttttatccagaaccacttataatatcactcatggt Alignment from Spaln_nt2Genome GATATCGACATCTTCAGCTGCGGAACCTCCACAATGAAATCTTGGAAATCTCTAGCTTATTCATAAACAGCAGAAGGATGGAAGAAAACCCCTCTGGCAGTTCCATGCCAGCCTCGTTG gttgcaccttgagccttgtttataggctgtcctgacgcctgttcccccagGATATCGACATCTTCAGCTCCGGAATCTCCACAAAGAAATCCTGGAAATTTCCAGACTATTCATTAACAGCAGAAGAATGGAAGAAAACCCCTCTGGCAGCTCTATGCCAGCCTCATTGgtaaataagtccagcttttatccagaaccacttataatatcactcatggt Alignment from Pairagon GATATCGACATCTTCAGCTGCGGAACCTCCACAATGAAATCTTGGAAATCTCTAGCTTATTCATAAACAGCAGAAGGATGGAAGAAAACCCCTCTGGCAGTTCCATGCCAGCCTCGTTG gttgcaccttgagccttgtttataggctgtcctgacgcctgttcccccagGATATCGACATCTTCAGCTCCGGAATCTCCACAAAGAAATCCTGGAAATTTCCAGACTATTCATTAACAGCAGAAGAATGGAAGAAAACCCCTCTGGCAGCTCTATGCCAGCCTCATTGgtaaataagtccagcttttatccagaaccacttataatatcactcatggt Alignment from Exonerate_protein2genome GATATCGACATCTTCAGCTGCGGAACCTCCACAATGAAATCTTGGAAATCTCTAGCTTATTCATAAACAGCAGAAGGATGGAAGAAAACCCCTCTGGCAGTTCCATGCCAGCCTCGTTG gttgcaccttgagccttgtttataggctgtcctgacgcctgttcccccagGATATCGACATCTTCAGCTCCGGAATCTCCACAAAGAAATCCTGGAAATTTCCAGACTATTCATTAACAGCAGAAGAATGGAAGAAAACCCCTCTGGCAGCTCTATGCCAGCCTCATTGgtaaataagtccagcttttatccagaaccacttataatatcactcatggt Alignment from Exonerate_coding2genome GATATCGACATCTTCAGCTGCGGAACCTCCACAATGAAATCTTGGAAATCTCTAGCTTATTCATAAACAGCAGAAGGATGGAAGAAAACCCCTCTGGCAGTTCCATGCCAGCCTCGTTG gttgcaccttgagccttgtttataggctgtcctgacgcctgttcccccagGATATCGACATCTTCAGCTCCGGAATCTCCACAAAGAAATCCTGGAAATTTCCAGACTATTCATTAACAGCAGAAGAATGGAAGAAAACCCCTCTGGCAGCTCTATGCCAGCCTCATTGgtaaataagtccagcttttatccagaaccacttataatatcactcatggt Alignment from GeneWise GATATCGACATCTTCAGCTGCGGAACCTCCACAATGAAATCTTGGAAATCTCTAGCTTATTCATAAACAGCAGAAGGATGGAAGAAAACCCCTCTGGCAGTTCCATGCCAGCCTCGTTG gttgcaccttgagccttgtttataggctgtcctgacgcctgttcccccagGATATCGACATCTTCAGCTCCGGAATCTCCACAAAGAAATCCTGGAAATTTCCAGACTATTCATTAACAGCAGAAGAATGGAAGAAAACCCCTCTGGCAGCTCTATGCCAGCCTCATTGgtaaataagtccagcttttatccagaaccacttataatatcactcatggt #### Plce1_ID7645_27 --> 0 - 0 Original Alignment ATGTTTAATACTGAAGAGAGGAAATGTTCTCAGACTCACAAAGTCACAGTGCATGGTGTCCCAGGTCCAGAGCCCTTTGCTGTTTTCACTATAAACGAAGGCACCAAGGCAAAGCAGCTTCTCCAACAG tgctgggaaaactggctagccatatgtactgctttttcccccccttaaagATGTTTAATACTGAGGAAAGGAAATGTTCACAGACTCATCGAATCACCGTATATGGTGTTCCAGGTCCCGAACCCTTTGCTGTCTTCACTATAAATGAGGGCAGCAAGGCAAAGCAGCTTCTCCAACAGgtgtgtggacactccacaattcatggttaatgaagggtaagttctagcaa Alignment from CESAR ATGTTTAATACTGAAGAGAGGAAATGTTCTCAGACTCACAAAGTCACAGTGCATGGTGTCCCAGGTCCAGAGCCCTTTGCTGTTTTCACTATAAACGAAGGCACCAAGGCAAAGCAGCTTCTCCAACAG tgctgggaaaactggctagccatatgtactgctttttcccccccttaaagATGTTTAATACTGAGGAAAGGAAATGTTCACAGACTCATCGAATCACCGTATATGGTGTTCCAGGTCCCGAACCCTTTGCTGTCTTCACTATAAATGAGGGCAGCAAGGCAAAGCAGCTTCTCCAACAGgtgtgtggacactccacaattcatggttaatgaagggtaagttctagcaa Alignment from Spaln_aa2Genome ATGTTTAATACTGAAGAGAGGAAATGTTCTCAGACTCACAAAGTCACAGTGCATGGTGTCCCAGGTCCAGAGCCCTTTGCTGTTTTCACTATAAACGAAGGCACCAAGGCAAAGCAGCTTCTCCAACAG tgctgggaaaactggctagccatatgtactgctttttcccccccttaaagATGTTTAATACTGAGGAAAGGAAATGTTCACAGACTCATCGAATCACCGTATATGGTGTTCCAGGTCCCGAACCCTTTGCTGTCTTCACTATAAATGAGGGCAGCAAGGCAAAGCAGCTTCTCCAACAGgtgtgtggacactccacaattcatggttaatgaagggtaagttctagcaa Alignment from Spaln_nt2Genome ATGTTTAATACTGAAGAGAGGAAATGTTCTCAGACTCACAAAGTCACAGTGCATGGTGTCCCAGGTCCAGAGCCCTTTGCTGTTTTCACTATAAACGAAGGCACCAAGGCAAAGCAGCTTCTCCAACAG tgctgggaaaactggctagccatatgtactgctttttcccccccttaaagATGTTTAATACTGAGGAAAGGAAATGTTCACAGACTCATCGAATCACCGTATATGGTGTTCCAGGTCCCGAACCCTTTGCTGTCTTCACTATAAATGAGGGCAGCAAGGCAAAGCAGCTTCTCCAACAGgtgtgtggacactccacaattcatggttaatgaagggtaagttctagcaa Alignment from Pairagon ATGTTTAATACTGAAGAGAGGAAATGTTCTCAGACTCACAAAGTCACAGTGCATGGTGTCCCAGGTCCAGAGCCCTTTGCTGTTTTCACTATAAACGAAGGCACCAAGGCAAAGCAGCTTCTCCAACAG tgctgggaaaactggctagccatatgtactgctttttcccccccttaaagATGTTTAATACTGAGGAAAGGAAATGTTCACAGACTCATCGAATCACCGTATATGGTGTTCCAGGTCCCGAACCCTTTGCTGTCTTCACTATAAATGAGGGCAGCAAGGCAAAGCAGCTTCTCCAACAGgtgtgtggacactccacaattcatggttaatgaagggtaagttctagcaa Alignment from Exonerate_protein2genome ATGTTTAATACTGAAGAGAGGAAATGTTCTCAGACTCACAAAGTCACAGTGCATGGTGTCCCAGGTCCAGAGCCCTTTGCTGTTTTCACTATAAACGAAGGCACCAAGGCAAAGCAGCTTCTCCAACAG tgctgggaaaactggctagccatatgtactgctttttcccccccttaaagATGTTTAATACTGAGGAAAGGAAATGTTCACAGACTCATCGAATCACCGTATATGGTGTTCCAGGTCCCGAACCCTTTGCTGTCTTCACTATAAATGAGGGCAGCAAGGCAAAGCAGCTTCTCCAACAGgtgtgtggacactccacaattcatggttaatgaagggtaagttctagcaa Alignment from Exonerate_coding2genome ATGTTTAATACTGAAGAGAGGAAATGTTCTCAGACTCACAAAGTCACAGTGCATGGTGTCCCAGGTCCAGAGCCCTTTGCTGTTTTCACTATAAACGAAGGCACCAAGGCAAAGCAGCTTCTCCAACAG tgctgggaaaactggctagccatatgtactgctttttcccccccttaaagATGTTTAATACTGAGGAAAGGAAATGTTCACAGACTCATCGAATCACCGTATATGGTGTTCCAGGTCCCGAACCCTTTGCTGTCTTCACTATAAATGAGGGCAGCAAGGCAAAGCAGCTTCTCCAACAGgtgtgtggacactccacaattcatggttaatgaagggtaagttctagcaa Alignment from GeneWise ATGTTTAATACTGAAGAGAGGAAATGTTCTCAGACTCACAAAGTCACAGTGCATGGTGTCCCAGGTCCAGAGCCCTTTGCTGTTTTCACTATAAACGAAGGCACCAAGGCAAAGCAGCTTCTCCAACAG tgctgggaaaactggctagccatatgtactgctttttcccccccttaaagATGTTTAATACTGAGGAAAGGAAATGTTCACAGACTCATCGAATCACCGTATATGGTGTTCCAGGTCCCGAACCCTTTGCTGTCTTCACTATAAATGAGGGCAGCAAGGCAAAGCAGCTTCTCCAACAGgtgtgtggacactccacaattcatggttaatgaagggtaagttctagcaa #### Pnlip_ID12743_2 --> 2 - 0 Original Alignment gaAGGGAAGTTTGCTTCGACAAACTCGGCTGCTTCAGTGATGATGCCCCCTGGTCAGGAACTCTAGACAGACCCCTGAAAGCACTGCCCTGGAGCCCAGCACAGATCAACACCCGCTTTCTCCTCTACACCAACGAGAATCCAGACAACTACCAG ttgcatggtttgttccccatgtactgcttattgtttctgtcttatgtcaggaAGGGAGGTTTGCTTTGACAAACTCAGCTGTTTCAGTGATGACACACCATGGTCAGGCACACTAGACAGACCACTGAAAGCACTACCCTGGAGTCCAGCACAAATCAATACCCGCTTCTTACTCTACACCAATGAGAAGCCAGATAATTATCAGgtcagaattatggattaaaaagcatcttaatacaactacaatgtatatta Alignment from CESAR gaAGGGAAGTTTGCTTCGACAAACTCGGCTGCTTCAGTGATGATGCCCCCTGGTCAGGAACTCTAGACAGACCCCTGAAAGCACTGCCCTGGAGCCCAGCACAGATCAACACCCGCTTTCTCCTCTACACCAACGAGAATCCAGACAACTACCAG ttgcatggtttgttccccatgtactgcttattgtttctgtcttatgtcaggaAGGGAGGTTTGCTTTGACAAACTCAGCTGTTTCAGTGATGACACACCATGGTCAGGCACACTAGACAGACCACTGAAAGCACTACCCTGGAGTCCAGCACAAATCAATACCCGCTTCTTACTCTACACCAATGAGAAGCCAGATAATTATCAGgtcagaattatggattaaaaagcatcttaatacaactacaatgtatatta Alignment from Spaln_aa2Genome GAAGGGAAGTTTGCTTCGACAAACTCGGCTGCTTCAGTGATGATGCCCCCTGGTCAGGAACTCTAGACAGACCCCTGAAAGCACTGCCCTGGAGCCCAGCACAGATCAACACCCGCTTTCTCCTCTACACCAACGAGAATCCAGACAACTACCAG ttgcatggtttgttccccatgtactgcttattgtttctgtcttatgtcagGAAGGGAGGTTTGCTTTGACAAACTCAGCTGTTTCAGTGATGACACACCATGGTCAGGCACACTAGACAGACCACTGAAAGCACTACCCTGGAGTCCAGCACAAATCAATACCCGCTTCTTACTCTACACCAATGAGAAGCCAGATAATTATCAGgtcagaattatggattaaaaagcatcttaatacaactacaatgtatatta Alignment from Spaln_nt2Genome GAAGGGAAGTTTGCTTCGACAAACTCGGCTGCTTCAGTGATGATGCCCCCTGGTCAGGAACTCTAGACAGACCCCTGAAAGCACTGCCCTGGAGCCCAGCACAGATCAACACCCGCTTTCTCCTCTACACCAACGAGAATCCAGACAACTACCAG ttgcatggtttgttccccatgtactgcttattgtttctgtcttatgtcagGAAGGGAGGTTTGCTTTGACAAACTCAGCTGTTTCAGTGATGACACACCATGGTCAGGCACACTAGACAGACCACTGAAAGCACTACCCTGGAGTCCAGCACAAATCAATACCCGCTTCTTACTCTACACCAATGAGAAGCCAGATAATTATCAGgtcagaattatggattaaaaagcatcttaatacaactacaatgtatatta Alignment from Pairagon GAAGGGAAGTTTGCTTCGACAAACTCGGCTGCTTCAGTGATGATGCCCCCTGGTCAGGAACTCTAGACAGACCCCTGAAAGCACTGCCCTGGAGCCCAGCACAGATCAACACCCGCTTTCTCCTCTACACCAACGAGAATCCAGACAACTACCAG ttgcatggtttgttccccatgtactgcttattgtttctgtcttatgtcagGAAGGGAGGTTTGCTTTGACAAACTCAGCTGTTTCAGTGATGACACACCATGGTCAGGCACACTAGACAGACCACTGAAAGCACTACCCTGGAGTCCAGCACAAATCAATACCCGCTTCTTACTCTACACCAATGAGAAGCCAGATAATTATCAGgtcagaattatggattaaaaagcatcttaatacaactacaatgtatatta Alignment from Exonerate_protein2genome GAAGGGAAGTTTGCTTCGACAAACTCGGCTGCTTCAGTGATGATGCCCCCTGGTCAGGAACTCTAGACAGACCCCTGAAAGCACTGCCCTGGAGCCCAGCACAGATCAACACCCGCTTTCTCCTCTACACCAACGAGAATCCAGACAACTACCAG ttgcatggtttgttccccatgtactgcttattgtttctgtcttatgtcagGAAGGGAGGTTTGCTTTGACAAACTCAGCTGTTTCAGTGATGACACACCATGGTCAGGCACACTAGACAGACCACTGAAAGCACTACCCTGGAGTCCAGCACAAATCAATACCCGCTTCTTACTCTACACCAATGAGAAGCCAGATAATTATCAGgtcagaattatggattaaaaagcatcttaatacaactacaatgtatatta Alignment from Exonerate_coding2genome GAAGGGAAGTTTGCTTCGACAAACTCGGCTGCTTCAGTGATGATGCCCCCTGGTCAGGAACTCTAGACAGACCCCTGAAAGCACTGCCCTGGAGCCCAGCACAGATCAACACCCGCTTTCTCCTCTACACCAACGAGAATCCAGACAACTACCAG ttgcatggtttgttccccatgtactgcttattgtttctgtcttatgtcagGAAGGGAGGTTTGCTTTGACAAACTCAGCTGTTTCAGTGATGACACACCATGGTCAGGCACACTAGACAGACCACTGAAAGCACTACCCTGGAGTCCAGCACAAATCAATACCCGCTTCTTACTCTACACCAATGAGAAGCCAGATAATTATCAGgtcagaattatggattaaaaagcatcttaatacaactacaatgtatatta Alignment from GeneWise CTAATGCTGTGGACATTTGCAGTGCTGCTGGGAGCAGTAGCTGGAAGGGAAGTTTGCTTCGACAAACTCGGCTGCTTCAGTGATGATGCCCCCTGGTCAGGAACTCTAGACAGACCCCTGAAAGCACTGCCCTGGAGCCCAGCACAGATCAACACCCGCTTTCTCCTCTACACCAACGAGAATCCAGACAACTACCAG ttccccaTGTACTGCTTATTGTTTCTGTCTTATG------------TCAGGAAGGGAGGTTTGCTTTGACAAACTCAGCTGTTTCAGTGATGACACACCATGGTCAGGCACACTAGACAGACCACTGAAAGCACTACCCTGGAGTCCAGCACAAATCAATACCCGCTTCTTACTCTACACCAATGAGAAGCCAGATAATTATCAGgtcagaattatggattaaaaagcatcttaatacaactacaatgtatatta #### Pnlip_ID12745_4 --> 0 - 0 Original Alignment AACATGTTCCGAGTGGAGAGTGTGAACTGCATCTGTGTGGACTGGAAAGGCGGTTCCCGAACGACATATACCCAGGCTACCCAGAACGTCCGGGTCGTGGGGGCAGAAGTGGCATTGTTGGTTAACGTTCTGCAG attagcttctgatgctcaatacaattgcaagtatttttccctgtccacagAATATGTTCCACGTGGAAAGTGTGAATTGCATCTGTGCAGACTGGAAGGGTGGTTCCCGTACAACCTACACCCAGGCTACACAGAATGCCCGGCTTGTGGGAGCAGAAGTGGCATTGCTGGTTAATGTTTTGCAGgtgagtgatcagttcaggattatgttaattcccaagtgtgcatggcaaga Alignment from CESAR AACATGTTCCGAGTGGAGAGTGTGAACTGCATCTGTGTGGACTGGAAAGGCGGTTCCCGAACGACATATACCCAGGCTACCCAGAACGTCCGGGTCGTGGGGGCAGAAGTGGCATTGTTGGTTAACGTTCTGCAG attagcttctgatgctcaatacaattgcaagtatttttccctgtccacagAATATGTTCCACGTGGAAAGTGTGAATTGCATCTGTGCAGACTGGAAGGGTGGTTCCCGTACAACCTACACCCAGGCTACACAGAATGCCCGGCTTGTGGGAGCAGAAGTGGCATTGCTGGTTAATGTTTTGCAGgtgagtgatcagttcaggattatgttaattcccaagtgtgcatggcaaga Alignment from Spaln_aa2Genome AACATGTTCCGAGTGGAGAGTGTGAACTGCATCTGTGTGGACTGGAAAGGCGGTTCCCGAACGACATATACCCAGGCTACCCAGAACGTCCGGGTCGTGGGGGCAGAAGTGGCATTGTTGGTTAACGTTCTGCAG attagcttctgatgctcaatacaattgcaagtatttttccctgtccacagAATATGTTCCACGTGGAAAGTGTGAATTGCATCTGTGCAGACTGGAAGGGTGGTTCCCGTACAACCTACACCCAGGCTACACAGAATGCCCGGCTTGTGGGAGCAGAAGTGGCATTGCTGGTTAATGTTTTGCAGgtgagtgatcagttcaggattatgttaattcccaagtgtgcatggcaaga Alignment from Spaln_nt2Genome AACATGTTCCGAGTGGAGAGTGTGAACTGCATCTGTGTGGACTGGAAAGGCGGTTCCCGAACGACATATACCCAGGCTACCCAGAACGTCCGGGTCGTGGGGGCAGAAGTGGCATTGTTGGTTAACGTTCTGCAG attagcttctgatgctcaatacaattgcaagtatttttccctgtccacagAATATGTTCCACGTGGAAAGTGTGAATTGCATCTGTGCAGACTGGAAGGGTGGTTCCCGTACAACCTACACCCAGGCTACACAGAATGCCCGGCTTGTGGGAGCAGAAGTGGCATTGCTGGTTAATGTTTTGCAGgtgagtgatcagttcaggattatgttaattcccaagtgtgcatggcaaga Alignment from Pairagon AACATGTTCCGAGTGGAGAGTGTGAACTGCATCTGTGTGGACTGGAAAGGCGGTTCCCGAACGACATATACCCAGGCTACCCAGAACGTCCGGGTCGTGGGGGCAGAAGTGGCATTGTTGGTTAACGTTCTGCAG attagcttctgatgctcaatacaattgcaagtatttttccctgtccacagAATATGTTCCACGTGGAAAGTGTGAATTGCATCTGTGCAGACTGGAAGGGTGGTTCCCGTACAACCTACACCCAGGCTACACAGAATGCCCGGCTTGTGGGAGCAGAAGTGGCATTGCTGGTTAATGTTTTGCAGgtgagtgatcagttcaggattatgttaattcccaagtgtgcatggcaaga Alignment from Exonerate_protein2genome AACATGTTCCGAGTGGAGAGTGTGAACTGCATCTGTGTGGACTGGAAAGGCGGTTCCCGAACGACATATACCCAGGCTACCCAGAACGTCCGGGTCGTGGGGGCAGAAGTGGCATTGTTGGTTAACGTTCTGCAG attagcttctgatgctcaatacaattgcaagtatttttccctgtccacagAATATGTTCCACGTGGAAAGTGTGAATTGCATCTGTGCAGACTGGAAGGGTGGTTCCCGTACAACCTACACCCAGGCTACACAGAATGCCCGGCTTGTGGGAGCAGAAGTGGCATTGCTGGTTAATGTTTTGCAGgtgagtgatcagttcaggattatgttaattcccaagtgtgcatggcaaga Alignment from Exonerate_coding2genome AACATGTTCCGAGTGGAGAGTGTGAACTGCATCTGTGTGGACTGGAAAGGCGGTTCCCGAACGACATATACCCAGGCTACCCAGAACGTCCGGGTCGTGGGGGCAGAAGTGGCATTGTTGGTTAACGTTCTGCAG attagcttctgatgctcaatacaattgcaagtatttttccctgtccacagAATATGTTCCACGTGGAAAGTGTGAATTGCATCTGTGCAGACTGGAAGGGTGGTTCCCGTACAACCTACACCCAGGCTACACAGAATGCCCGGCTTGTGGGAGCAGAAGTGGCATTGCTGGTTAATGTTTTGCAGgtgagtgatcagttcaggattatgttaattcccaagtgtgcatggcaaga Alignment from GeneWise AACATGTTCCGAGTGGAGAGTGTGAACTGCATCTGTGTGGACTGGAAAGGCGGTTCCCGAACGACATATACCCAGGCTACCCAGAACGTCCGGGTCGTGGGGGCAGAAGTGGCATTGTTGGTTAACGTTCTGCAG attagcttctgatgctcaatacaattgcaagtatttttccctgtccacagAATATGTTCCACGTGGAAAGTGTGAATTGCATCTGTGCAGACTGGAAGGGTGGTTCCCGTACAACCTACACCCAGGCTACACAGAATGCCCGGCTTGTGGGAGCAGAAGTGGCATTGCTGGTTAATGTTTTGCAGgtgagtgatcagttcaggattatgttaattcccaagtgtgcatggcaaga #### Pnlip_ID12746_5 --> 0 - 1 Original Alignment TCTGATCTGGGATACTCACTTAACAATGTCCACCTGATTGGCCAC---AGCCTGGGTTCCCACATTGCTGGGGAGGCTGGAAAGAGGACCTTTGGAGCCATTGGAAGGATCACAg agggttttgtgttactagccgagtagttttctcttttgttctctgtctagTCTGATCTGGGATACTCACTTAACAATGTCCACCTGATTGGTTACAACAGTCTAGGGTCCCACATAGCTGGGGAGGCTGGGAGGAGGGCATTTGGGGCTATTGGACGGATCACAggtactcttgctattaattggttaacttgtggcatttcccccaagttatct Alignment from CESAR TCTGATCTGGGATACTCACTTAACAATGTCCACCTGATTGGCCAC---AGCCTGGGTTCCCACATTGCTGGGGAGGCTGGAAAGAGGACCTTTGGAGCCATTGGAAGGATCACAg agggttttgtgttactagccgagtagttttctcttttgttctctgtctagTCTGATCTGGGATACTCACTTAACAATGTCCACCTGATTGGTTACAACAGTCTAGGGTCCCACATAGCTGGGGAGGCTGGGAGGAGGGCATTTGGGGCTATTGGACGGATCACAggtactcttgctattaattggttaacttgtggcatttcccccaagttatct Alignment from Spaln_aa2Genome TCTGATCTGGGATACTCACTTAACAATGTCCACCTGATTGGCCAC---AGCCTGGGTTCCCACATTGCTGGGGAGGCTGGAAAGAGGACCTTTGGAGCCATTGGAAGGATCACAG agggttttgtgttactagccgagtagttttctcttttgttctctgtctagTCTGATCTGGGATACTCACTTAACAATGTCCACCTGATTGGTTACAACAGTCTAGGGTCCCACATAGCTGGGGAGGCTGGGAGGAGGGCATTTGGGGCTATTGGACGGATCACAGgtactcttgctattaattggttaacttgtggcatttcccccaagttatct Alignment from Spaln_nt2Genome TCTGATCTGGGATACTCACTTAACAATGTCCACCTGATTGG---CCACAGCCTGGGTTCCCACATTGCTGGGGAGGCTGGAAAGAGGACCTTTGGAGCCATTGGAAGGATCACAG agggttttgtgttactagccgagtagttttctcttttgttctctgtctagTCTGATCTGGGATACTCACTTAACAATGTCCACCTGATTGGTTACAACAGTCTAGGGTCCCACATAGCTGGGGAGGCTGGGAGGAGGGCATTTGGGGCTATTGGACGGATCACAGgtactcttgctattaattggttaacttgtggcatttcccccaagttatct Alignment from Pairagon TCTGATCTGGGATACTCACTTAACAATGTCCACCTGATTGG---CCACAGCCTGGGTTCCCACATTGCTGGGGAGGCTGGAAAGAGGACCTTTGGAGCCATTGGAAGGATCACAG agggttttgtgttactagccgagtagttttctcttttgttctctgtctagTCTGATCTGGGATACTCACTTAACAATGTCCACCTGATTGGTTACAACAGTCTAGGGTCCCACATAGCTGGGGAGGCTGGGAGGAGGGCATTTGGGGCTATTGGACGGATCACAGgtactcttgctattaattggttaacttgtggcatttcccccaagttatct Alignment from Exonerate_protein2genome TCTGATCTGGGATACTCACTTAACAATGTCCACCTGATTGGCCAC---AGCCTGGGTTCCCACATTGCTGGGGAGGCTGGAAAGAGGACCTTTGGAGCCATTGGAAGGATCACAG agggttttgtgttactagccgagtagttttctcttttgttctctgtctagTCTGATCTGGGATACTCACTTAACAATGTCCACCTGATTGGTTACAACAGTCTAGGGTCCCACATAGCTGGGGAGGCTGGGAGGAGGGCATTTGGGGCTATTGGACGGATCACAGgtactcttgctattaattggttaacttgtggcatttcccccaagttatct Alignment from Exonerate_coding2genome TCTGATCTGGGATACTCACTTAACAATGTCCACCTGATTGGCCAC---AGCCTGGGTTCCCACATTGCTGGGGAGGCTGGAAAGAGGACCTTTGGAGCCATTGGAAGGATCACAG agggttttgtgttactagccgagtagttttctcttttgttctctgtctagTCTGATCTGGGATACTCACTTAACAATGTCCACCTGATTGGTTACAACAGTCTAGGGTCCCACATAGCTGGGGAGGCTGGGAGGAGGGCATTTGGGGCTATTGGACGGATCACAGgtactcttgctattaattggttaacttgtggcatttcccccaagttatct Alignment from GeneWise TCTGATCTGGGATACTCACTTAACAATGTCCACCTGATTGGCCAC---AGCCTGGGTTCCCACATTGCTGGGGAGGCTGGAAAGAGGACCTTTGGAGCCATTGGAAGGATCACAG agggttttgtgttactagccgagtagttttctcttttgttctctgtctagTCTGATCTGGGATACTCACTTAACAATGTCCACCTGATTGGTTACAACAGTCTAGGGTCCCACATAGCTGGGGAGGCTGGGAGGAGGGCATTTGGGGCTATTGGACGGATCACAGgtactcttgctattaattggttaacttgtggcatttcccccaagttatct #### Pnlip_ID12749_8 --> 2 - 0 Original Alignment gaACTCGAAACTTTGCTGCCTGTAACCACTTAAGAAGCTACAAGTTTTACACCGACAGCATCGTCAACCCAACTGGCTTTGCTGGGTTCTCCTGTAGCTCTTACAGTCTTTTCACGGCA aaatacctcacataggggacaatatgaacctgatctacttttaccaacaggaACTAGAAATTTTGCTGCTTGTAACCATTTAAGAAGCTACAAGTTTTACACTGACAGCATTGTTAACCCAACTGGTTTTGCTGGGTTCTCCTGTAGCTCTTACAGTCTTTTCACGGCAgtaagatggcgttgagatgtcatatgttacaactttgtgataactttgga Alignment from CESAR gaACTCGAAACTTTGCTGCCTGTAACCACTTAAGAAGCTACAAGTTTTACACCGACAGCATCGTCAACCCAACTGGCTTTGCTGGGTTCTCCTGTAGCTCTTACAGTCTTTTCACGGCA aaatacctcacataggggacaatatgaacctgatctacttttaccaacaggaACTAGAAATTTTGCTGCTTGTAACCATTTAAGAAGCTACAAGTTTTACACTGACAGCATTGTTAACCCAACTGGTTTTGCTGGGTTCTCCTGTAGCTCTTACAGTCTTTTCACGGCAgtaagatggcgttgagatgtcatatgttacaactttgtgataactttgga Alignment from Spaln_aa2Genome GAACTCGAAACTTTGCTGCCTGTAACCACTTAAGAAGCTACAAGTTTTACACCGACAGCATCGTCAACCCAACTGGCTTTGCTGGGTTCTCCTGTAGCTCTTACAGTCTTTTCACGGCA aaatacctcacataggggacaatatgaacctgatctacttttaccaacagGAACTAGAAATTTTGCTGCTTGTAACCATTTAAGAAGCTACAAGTTTTACACTGACAGCATTGTTAACCCAACTGGTTTTGCTGGGTTCTCCTGTAGCTCTTACAGTCTTTTCACGGCAgtaagatggcgttgagatgtcatatgttacaactttgtgataactttgga Alignment from Spaln_nt2Genome GAACTCGAAACTTTGCTGCCTGTAACCACTTAAGAAGCTACAAGTTTTACACCGACAGCATCGTCAACCCAACTGGCTTTGCTGGGTTCTCCTGTAGCTCTTACAGTCTTTTCACGGCA aaatacctcacataggggacaatatgaacctgatctacttttaccaacagGAACTAGAAATTTTGCTGCTTGTAACCATTTAAGAAGCTACAAGTTTTACACTGACAGCATTGTTAACCCAACTGGTTTTGCTGGGTTCTCCTGTAGCTCTTACAGTCTTTTCACGGCAgtaagatggcgttgagatgtcatatgttacaactttgtgataactttgga Alignment from Pairagon GAACTCGAAACTTTGCTGCCTGTAACCACTTAAGAAGCTACAAGTTTTACACCGACAGCATCGTCAACCCAACTGGCTTTGCTGGGTTCTCCTGTAGCTCTTACAGTCTTTTCACGGCA aaatacctcacataggggacaatatgaacctgatctacttttaccaacagGAACTAGAAATTTTGCTGCTTGTAACCATTTAAGAAGCTACAAGTTTTACACTGACAGCATTGTTAACCCAACTGGTTTTGCTGGGTTCTCCTGTAGCTCTTACAGTCTTTTCACGGCAgtaagatggcgttgagatgtcatatgttacaactttgtgataactttgga Alignment from Exonerate_protein2genome GAACTCGAAACTTTGCTGCCTGTAACCACTTAAGAAGCTACAAGTTTTACACCGACAGCATCGTCAACCCAACTGGCTTTGCTGGGTTCTCCTGTAGCTCTTACAGTCTTTTCACGGCA aaatacctcacataggggacaatatgaacctgatctacttttaccaacagGAACTAGAAATTTTGCTGCTTGTAACCATTTAAGAAGCTACAAGTTTTACACTGACAGCATTGTTAACCCAACTGGTTTTGCTGGGTTCTCCTGTAGCTCTTACAGTCTTTTCACGGCAgtaagatggcgttgagatgtcatatgttacaactttgtgataactttgga Alignment from Exonerate_coding2genome GAACTCGAAACTTTGCTGCCTGTAACCACTTAAGAAGCTACAAGTTTTACACCGACAGCATCGTCAACCCAACTGGCTTTGCTGGGTTCTCCTGTAGCTCTTACAGTCTTTTCACGGCA aaatacctcacataggggacaatatgaacctgatctacttttaccaacagGAACTAGAAATTTTGCTGCTTGTAACCATTTAAGAAGCTACAAGTTTTACACTGACAGCATTGTTAACCCAACTGGTTTTGCTGGGTTCTCCTGTAGCTCTTACAGTCTTTTCACGGCAgtaagatggcgttgagatgtcatatgttacaactttgtgataactttgga Alignment from GeneWise GAACTCGAAACTTTGCTGCCTGTAACCACTTAAGAAGCTACAAGTTTTACACCGACAGCATCGTCAACCCAACTGGCTTTGCTGGGTTCTCCTGTAGCTCTTACAGTCTTTTCACGGCA aaatacctcacataggggacaatatgaacctgatctacttttaccaacagGAACTAGAAATTTTGCTGCTTGTAACCATTTAAGAAGCTACAAGTTTTACACTGACAGCATTGTTAACCCAACTGGTTTTGCTGGGTTCTCCTGTAGCTCTTACAGTCTTTTCACGGCAgtaagatggcgttgagatgtcatatgttacaactttgtgataactttgga #### Pnlip_ID12750_9 --> 0 - 1 Original Alignment AATAAGTGCTTCCCATGTGGGAGTGGAGGATGCCCCCAGATGGGTCATTACGCTGACAGATATCCTGGGAAAACAAGCAGACTCTACCAGACATTTTACCTCAACACCGGTGATAAGAGCAACTTCGCAc ctgtcttgataattagtgatcttctagctcttgtaattcccgtttaacagAATAAGTGCTTCCCAAGTGGGAGTGGAGGATGCCCACAGATGGGTCATTATGCTGACAGATATCCAGGAAAGACAAGCAGGCTCTACCAAACGTTCTACCTCAACACTGGAGATAAGAGCAACTTTGCAcgtaggtatctgtgtcatctgaccttctgcttattatttgagctactatct Alignment from CESAR AATAAGTGCTTCCCATGTGGGAGTGGAGGATGCCCCCAGATGGGTCATTACGCTGACAGATATCCTGGGAAAACAAGCAGACTCTACCAGACATTTTACCTCAACACCGGTGATAAGAGCAACTTCGCAc ctgtcttgataattagtgatcttctagctcttgtaattcccgtttaacagAATAAGTGCTTCCCAAGTGGGAGTGGAGGATGCCCACAGATGGGTCATTATGCTGACAGATATCCAGGAAAGACAAGCAGGCTCTACCAAACGTTCTACCTCAACACTGGAGATAAGAGCAACTTTGCAcgtaggtatctgtgtcatctgaccttctgcttattatttgagctactatct Alignment from Spaln_aa2Genome AATAAGTGCTTCCCATGTGGGAGTGGAGGATGCCCCCAGATGGGTCATTACGCTGACAGATATCCTGGGAAAACAAGCAGACTCTACCAGACATTTTACCTCAACACCGGTGATAAGAGCAACTTCGCAC ctgtcttgataattagtgatcttctagctcttgtaattcccgtttaacagAATAAGTGCTTCCCAAGTGGGAGTGGAGGATGCCCACAGATGGGTCATTATGCTGACAGATATCCAGGAAAGACAAGCAGGCTCTACCAAACGTTCTACCTCAACACTGGAGATAAGAGCAACTTTGCACgtaggtatctgtgtcatctgaccttctgcttattatttgagctactatct Alignment from Spaln_nt2Genome AATAAGTGCTTCCCATGTGGGAGTGGAGGATGCCCCCAGATGGGTCATTACGCTGACAGATATCCTGGGAAAACAAGCAGACTCTACCAGACATTTTACCTCAACACCGGTGATAAGAGCAACTTCGCAC ctgtcttgataattagtgatcttctagctcttgtaattcccgtttaacagAATAAGTGCTTCCCAAGTGGGAGTGGAGGATGCCCACAGATGGGTCATTATGCTGACAGATATCCAGGAAAGACAAGCAGGCTCTACCAAACGTTCTACCTCAACACTGGAGATAAGAGCAACTTTGCACgtaggtatctgtgtcatctgaccttctgcttattatttgagctactatct Alignment from Pairagon AATAAGTGCTTCCCATGTGGGAGTGGAGGATGCCCCCAGATGGGTCATTACGCTGACAGATATCCTGGGAAAACAAGCAGACTCTACCAGACATTTTACCTCAACACCGGTGATAAGAGCAACTTCGCAC ctgtcttgataattagtgatcttctagctcttgtaattcccgtttaacagAATAAGTGCTTCCCAAGTGGGAGTGGAGGATGCCCACAGATGGGTCATTATGCTGACAGATATCCAGGAAAGACAAGCAGGCTCTACCAAACGTTCTACCTCAACACTGGAGATAAGAGCAACTTTGCACgtaggtatctgtgtcatctgaccttctgcttattatttgagctactatct Alignment from Exonerate_protein2genome AATAAGTGCTTCCCATGTGGGAGTGGAGGATGCCCCCAGATGGGTCATTACGCTGACAGATATCCTGGGAAAACAAGCAGACTCTACCAGACATTTTACCTCAACACCGGTGATAAGAGCAACTTCGCAC ctgtcttgataattagtgatcttctagctcttgtaattcccgtttaacagAATAAGTGCTTCCCAAGTGGGAGTGGAGGATGCCCACAGATGGGTCATTATGCTGACAGATATCCAGGAAAGACAAGCAGGCTCTACCAAACGTTCTACCTCAACACTGGAGATAAGAGCAACTTTGCACgtaggtatctgtgtcatctgaccttctgcttattatttgagctactatct Alignment from Exonerate_coding2genome AATAAGTGCTTCCCATGTGGGAGTGGAGGATGCCCCCAGATGGGTCATTACGCTGACAGATATCCTGGGAAAACAAGCAGACTCTACCAGACATTTTACCTCAACACCGGTGATAAGAGCAACTTCGCAC ctgtcttgataattagtgatcttctagctcttgtaattcccgtttaacagAATAAGTGCTTCCCAAGTGGGAGTGGAGGATGCCCACAGATGGGTCATTATGCTGACAGATATCCAGGAAAGACAAGCAGGCTCTACCAAACGTTCTACCTCAACACTGGAGATAAGAGCAACTTTGCACgtaggtatctgtgtcatctgaccttctgcttattatttgagctactatct Alignment from GeneWise AATAAGTGCTTCCCATGTGGGAGTGGAGGATGCCCCCAGATGGGTCATTACGCTGACAGATATCCTGGGAAAACAAGCAGACTCTACCAGACATTTTACCTCAACACCGGTGATAAGAGCAACTTCGCAC ctgtcttgataattagtgatcttctagctcttgtaattcccgtttaacagAATAAGTGCTTCCCAAGTGGGAGTGGAGGATGCCCACAGATGGGTCATTATGCTGACAGATATCCAGGAAAGACAAGCAGGCTCTACCAAACGTTCTACCTCAACACTGGAGATAAGAGCAACTTTGCACgtaggtatctgtgtcatctgaccttctgcttattatttgagctactatct #### Pnliprp1_ID12766_3 --> 0 - 0 Original Alignment ACTCTTCAGCTTTCTGACCCATCGACCATTGAGGCCTCCAATTTTCAAGTTGCCAGGAAGACTCGGTTCATCATCCATGGCTTCATAGACAAAGGAGAGGAGAACTGGGTGGTTGACATGTGCAAG ctctgttgtggaggatttgtggacagcatcctatagctttttttccccagACTCTTCAATTTTCTGAGTCATCAACCATTGAGCCCTCCAATTTTCAAGTCACC------ACATGTTTAATTGTCCACTGCTTCATAGGCATAGGGGAAGAAAATTGGGTGGTAGGTATGTGCAAGgtgagtaacatcatttaatggggttgttcgtttttctcttgaaaatttgc Alignment from CESAR ACTCTTCAGCTTTCTGACCCATCGACCATTGAGGCCTCCAATTTTCAAGTTGCCAGGAAGACTCGGTTCATCATCCATGGCTTCATAGACAAAGGAGAGGAGAACTGGGTGGTTGACATGTGCAAG ctctgttgtggaggatttgtggacagcatcctatagctttttttccccagACTCTTCAATTTTCTGAGTCATCAACCATTGAGCCCTCCAATTTTCAAGTCACC------ACATGTTTAATTGTCCACTGCTTCATAGGCATAGGGGAAGAAAATTGGGTGGTAGGTATGTGCAAGgtgagtaacatcatttaatggggttgttcgtttttctcttgaaaatttgc Alignment from Spaln_aa2Genome ACTCTTCAGCTTTCTGACCCATCGACCATTGAGGCCTCCAATTTTCAAGTTGCCAGGAAGACTCGGTTCATCATCCATGGCTTCATAGACAAAGGAGAGGAGAACTGGGTGGTTGACATGTGCAAG ctctgttgtggaggatttgtggacagcatcctatagctttttttccccagACTCTTCAATTTTCTGAGTCATCAACCATTGAGCCCTCCAATTTTCAAGTCACC------ACATGTTTAATTGTCCACTGCTTCATAGGCATAGGGGAAGAAAATTGGGTGGTAGGTATGTGCAAGgtgagtaacatcatttaatggggttgttcgtttttctcttgaaaatttgc Alignment from Spaln_nt2Genome ACTCTTCAGCTTTCTGACCCATCGACCATTGAGGCCTCCAATTTTCAAGTTGCCAGGAAGACTCGGTTCATCATCCATGGCTTCATAGACAAAGGAGAGGAGAACTGGGTGGTTGACATGTGCAAG ctctgttgtggaggatttgtggacagcatcctatagctttttttccccagACTCTTCAATTTTCTGAGTCATCAACCATTGAGCCCTCCAATTTTCAAGTCACC------ACATGTTTAATTGTCCACTGCTTCATAGGCATAGGGGAAGAAAATTGGGTGGTAGGTATGTGCAAGgtgagtaacatcatttaatggggttgttcgtttttctcttgaaaatttgc Alignment from Pairagon ACTCTTCAGCTTTCTGACCCATCGACCATTGAGGCCTCCAATTTTCAAGTTGCCAGGAAGACTCGGTTCATCATCCATG--------------GCTTCATAGACAAAGGAGAGGAGAACTGGGTGGTTGACATGTGCAAG ctctgttgtggaggatttgtggacagcatcctatagctttttttccccagACTCTTCAATTTTCTGAGTCATCAACCATTGAGCCCTCCAATTTTCAAGTCACCA--------------------CATGTTTAATTGTCCACTGCTTCATAGGCATAGGGGAAGAAAATTGGGTGGTAGGTATGTGCAAGgtgagtaacatcatttaatggggttgttcgtttttctcttgaaaatttgc Alignment from Exonerate_protein2genome ACTCTTCAGCTTTCTGACCCATCGACCATTGAGGCCTCCAATTTTCAAGTTGCCAGGAAGACTCGGTTCATCATCCATGGCTTCATAGACAAAGGAGAGGAGAACTGGGTGGTTGACATGTGCAAG ctctgttgtggaggatttgtggacagcatcctatagctttttttccccagACTCTTCAATTTTCTGAGTCATCAACCATTGAGCCCTCCAATTTTCAAGTCACC------ACATGTTTAATTGTCCACTGCTTCATAGGCATAGGGGAAGAAAATTGGGTGGTAGGTATGTGCAAGgtgagtaacatcatttaatggggttgttcgtttttctcttgaaaatttgc Alignment from Exonerate_coding2genome ACTCTTCAGCTTTCTGACCCATCGACCATTGAGGCCTCCAATTTTCAAGTTGCCAGGAAGACTCGGTTCATCATCCATGGCTTCATAGACAAAGGAGAGGAGAACTGGGTGGTTGACATGTGCAAG ctctgttgtggaggatttgtggacagcatcctatagctttttttccccagACTCTTCAATTTTCTGAGTCATCAACCATTGAGCCCTCCAATTTTCAAGTCACC------ACATGTTTAATTGTCCACTGCTTCATAGGCATAGGGGAAGAAAATTGGGTGGTAGGTATGTGCAAGgtgagtaacatcatttaatggggttgttcgtttttctcttgaaaatttgc Alignment from GeneWise ACTCTTCAGCTTTCTGACCCATCGACCATTGAGGCCTCCAATTTTCAAGTTGCCAGGAAGACTCGGTTCATCATCCATGGCTTCATAGACAAAGGAGAGGAGAACTGGGTGGTTGACATGTGCAAG ctctgttgtggaggatttgtggacagcatcctatagctttttttccccagACTCTTCAATTTTCTGAGTCATCAACCATTGAGCCCTCCAATTTTCAAGTCACC------ACATGTTTAATTGTCCACTGCTTCATAGGCATAGGGGAAGAAAATTGGGTGGTAGGTATGTGCAAGgtgagtaacatcatttaatggggttgttcgtttttctcttgaaaatttgc #### Pnliprp1_ID12768_5 --> 0 - 1 Original Alignment AGAAACTTCAACTACTCTGCTTCCAAAGTCCACCTCATTGGCCACAGCCTAGGAGCCCACGTGGCAGGGGAAGCAGGAAGTCGGACTCCAGGTCTTGGCAGGATTACAg gctgggtgtgttcaaaggccctttatgccattgtgtctgttacattgcagAGGAACCTGAACTATTTCGCTTCCAAAATCCAC---CTTGGCCACAGTCTAGGTGCCCATGTTGCGGGTGAAGCAGGAAGTCGGAATTCAGGCCTTAGCAGGATTACAggtatgaattccatttttaaatgacaaagaggaatattggaatgcactagg Alignment from CESAR AGAAACTTCAACTACTCTGCTTCCAAAGTCCACCTCATTGGCCACAGCCTAGGAGCCCACGTGGCAGGGGAAGCAGGAAGTCGGACTCCAGGTCTTGGCAGGATTACAg gctgggtgtgttcaaaggccctttatgccattgtgtctgttacattgcagAGGAACCTGAACTATTTCGCTTCCAAAATCCACCTT---GGCCACAGTCTAGGTGCCCATGTTGCGGGTGAAGCAGGAAGTCGGAATTCAGGCCTTAGCAGGATTACAggtatgaattccatttttaaatgacaaagaggaatattggaatgcactagg Alignment from Spaln_aa2Genome AGAAACTTCAACTACTCTGCTTCCAAAGTCCACCTCATTGGCCACAGCCTAGGAGCCCACGTGGCAGGGGAAGCAGGAAGTCGGACTCCAGGTCTTGGCAGGATTACAG gctgggtgtgttcaaaggccctttatgccattgtgtctgttacattgcagAGGAACCTGAACTATTTCGCTTCCAAAATCCACCTT---GGCCACAGTCTAGGTGCCCATGTTGCGGGTGAAGCAGGAAGTCGGAATTCAGGCCTTAGCAGGATTACAGgtatgaattccatttttaaatgacaaagaggaatattggaatgcactagg Alignment from Spaln_nt2Genome AGAAACTTCAACTACTCTGCTTCCAAAGTCCACCTCATTGGCCACAGCCTAGGAGCCCACGTGGCAGGGGAAGCAGGAAGTCGGACTCCAGGTCTTGGCAGGATTACAG gctgggtgtgttcaaaggccctttatgccattgtgtctgttacattgcagAGGAACCTGAACTATTTCGCTTCCAAAAT---CCACCTTGGCCACAGTCTAGGTGCCCATGTTGCGGGTGAAGCAGGAAGTCGGAATTCAGGCCTTAGCAGGATTACAGgtatgaattccatttttaaatgacaaagaggaatattggaatgcactagg Alignment from Pairagon AGAAACTTCAACTACTCTGCTTCCAAAGTCCACCTCATTGGCCACAGCCTAGGAGCCCACGTGGCAGGGGAAGCAGGAAGTCGGACTCCAGGTCTTGGCAGGATTACAG gctgggtgtgttcaaaggccctttatgccattgtgtctgttacattgcagAGGAACCTGAACTATTTCGCTTCCAAAATCCACC---TTGGCCACAGTCTAGGTGCCCATGTTGCGGGTGAAGCAGGAAGTCGGAATTCAGGCCTTAGCAGGATTACAGgtatgaattccatttttaaatgacaaagaggaatattggaatgcactagg Alignment from Exonerate_protein2genome AGAAACTTCAACTACTCTGCTTCCAAAGTCCACCTCATTGGCCACAGCCTAGGAGCCCACGTGGCAGGGGAAGCAGGAAGTCGGACTCCAGGTCTTGGCAGGATTACAG gctgggtgtgttcaaaggccctttatgccattgtgtctgttacattgcagAGGAACCTGAACTATTTCGCTTCCAAAATCCACCTT---GGCCACAGTCTAGGTGCCCATGTTGCGGGTGAAGCAGGAAGTCGGAATTCAGGCCTTAGCAGGATTACAGgtatgaattccatttttaaatgacaaagaggaatattggaatgcactagg Alignment from Exonerate_coding2genome AGAAACTTCAACTACTCTGCTTCCAAAGTCCACCTCATTGGCCACAGCCTAGGAGCCCACGTGGCAGGGGAAGCAGGAAGTCGGACTCCAGGTCTTGGCAGGATTACAG gctgggtgtgttcaaaggccctttatgccattgtgtctgttacattgcagAGGAACCTGAACTATTTCGCTTCCAAAATCCACCTT---GGCCACAGTCTAGGTGCCCATGTTGCGGGTGAAGCAGGAAGTCGGAATTCAGGCCTTAGCAGGATTACAGgtatgaattccatttttaaatgacaaagaggaatattggaatgcactagg Alignment from GeneWise AGAAACTTCAACTACTCTGCTTCCAAAGTCCACCTCATTGGCCACAGCCTAGGAGCCCACGTGGCAGGGGAAGCAGGAAGTCGGACTCCAGGTCTTGGCAGGATTACAG gctgggtgtgttcaaaggccctttatgccattgtgtctgttacattgcagAGGAACCTGAACTATTTCGCTTCCAAAATCCACCTT---GGCCACAGTCTAGGTGCCCATGTTGCGGGTGAAGCAGGAAGTCGGAATTCAGGCCTTAGCAGGATTACAGgtatgaattccatttttaaatgacaaagaggaatattggaatgcactagg #### Pnliprp1_ID12770_7 --> 2 - 1 Original Alignment gcTTTGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGAGGACAGTACATGCCCGGGTGCAAGAAGAACGCTCTGTCACAGATTGTGGACATCGATGGCATCTGGTCAg ggtctctgtatactagtgaacaagggcttttcctgttattctctccttagggTTGGGAACAAACCAAATGGTGGGGCACTTCGACTTCTTCCCCAACGGGGGACAGTACATGCCTGGGTGCAAGAAGAACACTCTCTCACAGATTGTGGACATTGATGGCATCTGGTCAggtaagtccaaccaccctctcacagattgtggagattggtggcgtctggtc Alignment from CESAR gcTTTGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGAGGACAGTACATGCCCGGGTGCAAGAAGAACGCTCTGTCACAGATTGTGGACATCGATGGCATCTGGTCAg ggtctctgtatactagtgaacaagggcttttcctgttattctctccttagggTTGGGAACAAACCAAATGGTGGGGCACTTCGACTTCTTCCCCAACGGGGGACAGTACATGCCTGGGTGCAAGAAGAACACTCTCTCACAGATTGTGGACATTGATGGCATCTGGTCAggtaagtccaaccaccctctcacagattgtggagattggtggcgtctggtc Alignment from Spaln_aa2Genome GCTTTGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGAGGACAGTACATGCCCGGGTGCAAGAAGAACGCTCTGTCACAGATTGTGGACATCGATGGCATCTGGTCAG ggtctctgtatactagtgaacaagggcttttcctgttattctctccttagGGTTGGGAACAAACCAAATGGTGGGGCACTTCGACTTCTTCCCCAACGGGGGACAGTACATGCCTGGGTGCAAGAAGAACACTCTCTCACAGATTGTGGACATTGATGGCATCTGGTCAGgtaagtccaaccaccctctcacagattgtggagattggtggcgtctggtc Alignment from Spaln_nt2Genome GCTTTGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGAGGACAGTACATGCCCGGGTGCAAGAAGAACGCTCTGTCACAGATTGTGGACATCGATGGCATCTGGTCAG ggtctctgtatactagtgaacaagggcttttcctgttattctctccttagGGTTGGGAACAAACCAAATGGTGGGGCACTTCGACTTCTTCCCCAACGGGGGACAGTACATGCCTGGGTGCAAGAAGAACACTCTCTCACAGATTGTGGACATTGATGGCATCTGGTCAGgtaagtccaaccaccctctcacagattgtggagattggtggcgtctggtc Alignment from Pairagon GCTTTGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGAGGACAGTACATGCCCGGGTGCAAGAAGAACGCTCTGTCACAGATTGTGGACATCGATGGCATCTGGTCAG ggtctctgtatactagtgaacaagggcttttcctgttattctctccttagGGTTGGGAACAAACCAAATGGTGGGGCACTTCGACTTCTTCCCCAACGGGGGACAGTACATGCCTGGGTGCAAGAAGAACACTCTCTCACAGATTGTGGACATTGATGGCATCTGGTCAGgtaagtccaaccaccctctcacagattgtggagattggtggcgtctggtc Alignment from Exonerate_protein2genome GCTTTGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGAGGACAGTACATGCCCGGGTGCAAGAAGAACGCTCTGTCACAGATTGTGGACATCGATGGCATCTGGTCAG ggtctctgtatactagtgaacaagggcttttcctgttattctctccttagGGTTGGGAACAAACCAAATGGTGGGGCACTTCGACTTCTTCCCCAACGGGGGACAGTACATGCCTGGGTGCAAGAAGAACACTCTCTCACAGATTGTGGACATTGATGGCATCTGGTCAGgtaagtccaaccaccctctcacagattgtggagattggtggcgtctggtc Alignment from Exonerate_coding2genome GCTTTGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGAGGACAGTACATGCCCGGGTGCAAGAAGAACGCTCTGTCACAGATTGTGGACATCGATGGCATCTGGTCAG ggtctctgtatactagtgaacaagggcttttcctgttattctctccttagGGTTGGGAACAAACCAAATGGTGGGGCACTTCGACTTCTTCCCCAACGGGGGACAGTACATGCCTGGGTGCAAGAAGAACACTCTCTCACAGATTGTGGACATTGATGGCATCTGGTCAGgtaagtccaaccaccctctcacagattgtggagattggtggcgtctggtc Alignment from GeneWise GCTTTGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGAGGACAGTACATGCCCGGGTGCAAGAAGAACGCTCTGTCACAGATTGTGGACATCGATGGCATCTGGTCAG ggtctctgtatactagtgaacaagggcttttcctgttattctctccttagGGTTGGGAACAAACCAAATGGTGGGGCACTTCGACTTCTTCCCCAACGGGGGACAGTACATGCCTGGGTGCAAGAAGAACACTCTCTCACAGATTGTGGACATTGATGGCATCTGGTCAGgtaagtccaaccaccctctcacagattgtggagattggtggcgtctggtc #### Pnliprp1_ID12773_10 --> 2 - 2 Original Alignment gcTGGAGGTACCGTGTTTCCTTGACATTCTCTGGAAGGACGGTCACAGGCCAAGTCAAAGTGTCTCTGTTTGGAAGTAACGGCAATACTCGCCAGTGTGATATCTTCag caaagtatagaactctgagatattattttgacactgtctttgactgtcagggTGGAGGTATCGTGTATCCTTGACATTTTTAGGAAGAACAGCCACAGGGAAAGTCAAAGTATCTCTGTTTGGGAGTAACAGTAATACACGCCAATGTGATATCTTCaggtatgggtgacgacttcaggtaactgtggggacagcacaatattctttga Alignment from CESAR gcTGGAGGTACCGTGTTTCCTTGACATTCTCTGGAAGGACGGTCACAGGCCAAGTCAAAGTGTCTCTGTTTGGAAGTAACGGCAATACTCGCCAGTGTGATATCTTCag caaagtatagaactctgagatattattttgacactgtctttgactgtcagggTGGAGGTATCGTGTATCCTTGACATTTTTAGGAAGAACAGCCACAGGGAAAGTCAAAGTATCTCTGTTTGGGAGTAACAGTAATACACGCCAATGTGATATCTTCaggtatgggtgacgacttcaggtaactgtggggacagcacaatattctttga Alignment from Spaln_aa2Genome GCTGGAGGTACCGTGTTTCCTTGACATTCTCTGGAAGGACGGTCACAGGCCAAGTCAAAGTGTCTCTGTTTGGAAGTAACGGCAATACTCGCCAGTGTGATATCTTCAG caaagtatagaactctgagatattattttgacactgtctttgactgtcagGGTGGAGGTATCGTGTATCCTTGACATTTTTAGGAAGAACAGCCACAGGGAAAGTCAAAGTATCTCTGTTTGGGAGTAACAGTAATACACGCCAATGTGATATCTTCAGgtatgggtgacgacttcaggtaactgtggggacagcacaatattctttga Alignment from Spaln_nt2Genome GCTGGAGGTACCGTGTTTCCTTGACATTCTCTGGAAGGACGGTCACAGGCCAAGTCAAAGTGTCTCTGTTTGGAAGTAACGGCAATACTCGCCAGTGTGATATCTTCAG caaagtatagaactctgagatattattttgacactgtctttgactgtcagGGTGGAGGTATCGTGTATCCTTGACATTTTTAGGAAGAACAGCCACAGGGAAAGTCAAAGTATCTCTGTTTGGGAGTAACAGTAATACACGCCAATGTGATATCTTCAGgtatgggtgacgacttcaggtaactgtggggacagcacaatattctttga Alignment from Pairagon GCTGGAGGTACCGTGTTTCCTTGACATTCTCTGGAAGGACGGTCACAGGCCAAGTCAAAGTGTCTCTGTTTGGAAGTAACGGCAATACTCGCCAGTGTGATATCTTCAG caaagtatagaactctgagatattattttgacactgtctttgactgtcagGGTGGAGGTATCGTGTATCCTTGACATTTTTAGGAAGAACAGCCACAGGGAAAGTCAAAGTATCTCTGTTTGGGAGTAACAGTAATACACGCCAATGTGATATCTTCAGgtatgggtgacgacttcaggtaactgtggggacagcacaatattctttga Alignment from Exonerate_protein2genome GCTGGAGGTACCGTGTTTCCTTGACATTCTCTGGAAGGACGGTCACAGGCCAAGTCAAAGTGTCTCTGTTTGGAAGTAACGGCAATACTCGCCAGTGTGATATCTTCAG caaagtatagaactctgagatattattttgacactgtctttgactgtcagGGTGGAGGTATCGTGTATCCTTGACATTTTTAGGAAGAACAGCCACAGGGAAAGTCAAAGTATCTCTGTTTGGGAGTAACAGTAATACACGCCAATGTGATATCTTCAGgtatgggtgacgacttcaggtaactgtggggacagcacaatattctttga Alignment from Exonerate_coding2genome GCTGGAGGTACCGTGTTTCCTTGACATTCTCTGGAAGGACGGTCACAGGCCAAGTCAAAGTGTCTCTGTTTGGAAGTAACGGCAATACTCGCCAGTGTGATATCTTCAG caaagtatagaactctgagatattattttgacactgtctttgactgtcagGGTGGAGGTATCGTGTATCCTTGACATTTTTAGGAAGAACAGCCACAGGGAAAGTCAAAGTATCTCTGTTTGGGAGTAACAGTAATACACGCCAATGTGATATCTTCAGgtatgggtgacgacttcaggtaactgtggggacagcacaatattctttga Alignment from GeneWise GCTGGAGGTACCGTGTTTCCTTGACATTCTCTGGAAGGACGGTCACAGGCCAAGTCAAAGTGTCTCTGTTTGGAAGTAACGGCAATACTCGCCAGTGTGATATCTTCAG caaagtatagaactctgagatattattttgacactgtctttgactgtcagGGTGGAGGTATCGTGTATCCTTGACATTTTTAGGAAGAACAGCCACAGGGAAAGTCAAAGTATCTCTGTTTGGGAGTAACAGTAATACACGCCAATGTGATATCTTCAGgtatgggtgacgacttcaggtaactgtggggacagcacaatattctttga #### Pnliprp2_ID12780_3 --> 0 - 0 Original Alignment ATAATCTCTGCCACCGACCCAGCCACCATCAATGCTTCCAACTTCCAACTGGACCGCAAGACACGTTTCATTATCCATGGATTCATAGACAAGGGAGAAGAAGGCTGGTTGCTGGACATGTGCAAG gtacagggcaactcaatcagatcaacggtcagctttgtggcctctcccagATAATTTCTGCCACAGACCCAGCAACTGTCAATACTTCTAACTTTCAACTGGACCATAAGACACGTTTCATTATACATGGATTCATTGGCAAGGGTGAGGAGGGCTGGTTACTGGAAATGTGTAAAgtgagtatttggaataagtatctgtccttagctccttgaaagcaccaatg Alignment from CESAR ATAATCTCTGCCACCGACCCAGCCACCATCAATGCTTCCAACTTCCAACTGGACCGCAAGACACGTTTCATTATCCATGGATTCATAGACAAGGGAGAAGAAGGCTGGTTGCTGGACATGTGCAAG gtacagggcaactcaatcagatcaacggtcagctttgtggcctctcccagATAATTTCTGCCACAGACCCAGCAACTGTCAATACTTCTAACTTTCAACTGGACCATAAGACACGTTTCATTATACATGGATTCATTGGCAAGGGTGAGGAGGGCTGGTTACTGGAAATGTGTAAAgtgagtatttggaataagtatctgtccttagctccttgaaagcaccaatg Alignment from Spaln_aa2Genome ATAATCTCTGCCACCGACCCAGCCACCATCAATGCTTCCAACTTCCAACTGGACCGCAAGACACGTTTCATTATCCATGGATTCATAGACAAGGGAGAAGAAGGCTGGTTGCTGGACATGTGCAAG gtacagggcaactcaatcagatcaacggtcagctttgtggcctctcccagATAATTTCTGCCACAGACCCAGCAACTGTCAATACTTCTAACTTTCAACTGGACCATAAGACACGTTTCATTATACATGGATTCATTGGCAAGGGTGAGGAGGGCTGGTTACTGGAAATGTGTAAAgtgagtatttggaataagtatctgtccttagctccttgaaagcaccaatg Alignment from Spaln_nt2Genome ATAATCTCTGCCACCGACCCAGCCACCATCAATGCTTCCAACTTCCAACTGGACCGCAAGACACGTTTCATTATCCATGGATTCATAGACAAGGGAGAAGAAGGCTGGTTGCTGGACATGTGCAAG gtacagggcaactcaatcagatcaacggtcagctttgtggcctctcccagATAATTTCTGCCACAGACCCAGCAACTGTCAATACTTCTAACTTTCAACTGGACCATAAGACACGTTTCATTATACATGGATTCATTGGCAAGGGTGAGGAGGGCTGGTTACTGGAAATGTGTAAAgtgagtatttggaataagtatctgtccttagctccttgaaagcaccaatg Alignment from Pairagon ATAATCTCTGCCACCGACCCAGCCACCATCAATGCTTCCAACTTCCAACTGGACCGCAAGACACGTTTCATTATCCATGGATTCATAGACAAGGGAGAAGAAGGCTGGTTGCTGGACATGTGCAAG gtacagggcaactcaatcagatcaacggtcagctttgtggcctctcccagATAATTTCTGCCACAGACCCAGCAACTGTCAATACTTCTAACTTTCAACTGGACCATAAGACACGTTTCATTATACATGGATTCATTGGCAAGGGTGAGGAGGGCTGGTTACTGGAAATGTGTAAAgtgagtatttggaataagtatctgtccttagctccttgaaagcaccaatg Alignment from Exonerate_protein2genome ATAATCTCTGCCACCGACCCAGCCACCATCAATGCTTCCAACTTCCAACTGGACCGCAAGACACGTTTCATTATCCATGGATTCATAGACAAGGGAGAAGAAGGCTGGTTGCTGGACATGTGCAAG gtacagggcaactcaatcagatcaacggtcagctttgtggcctctcccagATAATTTCTGCCACAGACCCAGCAACTGTCAATACTTCTAACTTTCAACTGGACCATAAGACACGTTTCATTATACATGGATTCATTGGCAAGGGTGAGGAGGGCTGGTTACTGGAAATGTGTAAAgtgagtatttggaataagtatctgtccttagctccttgaaagcaccaatg Alignment from Exonerate_coding2genome ATAATCTCTGCCACCGACCCAGCCACCATCAATGCTTCCAACTTCCAACTGGACCGCAAGACACGTTTCATTATCCATGGATTCATAGACAAGGGAGAAGAAGGCTGGTTGCTGGACATGTGCAAG gtacagggcaactcaatcagatcaacggtcagctttgtggcctctcccagATAATTTCTGCCACAGACCCAGCAACTGTCAATACTTCTAACTTTCAACTGGACCATAAGACACGTTTCATTATACATGGATTCATTGGCAAGGGTGAGGAGGGCTGGTTACTGGAAATGTGTAAAgtgagtatttggaataagtatctgtccttagctccttgaaagcaccaatg Alignment from GeneWise ATAATCTCTGCCACCGACCCAGCCACCATCAATGCTTCCAACTTCCAACTGGACCGCAAGACACGTTTCATTATCCATGGATTCATAGACAAGGGAGAAGAAGGCTGGTTGCTGGACATGTGCAAG gtacagggcaactcaatcagatcaacggtcagctttgtggcctctcccagATAATTTCTGCCACAGACCCAGCAACTGTCAATACTTCTAACTTTCAACTGGACCATAAGACACGTTTCATTATACATGGATTCATTGGCAAGGGTGAGGAGGGCTGGTTACTGGAAATGTGTAAAgtgagtatttggaataagtatctgtccttagctccttgaaagcaccaatg #### Pola2_ID1324_16 --> 1 - 2 Original Alignment cTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAag tactcgatcaggaacctgtcctatccccttatggttgtttttgtttctagcTCCTTGGGGACACCAGATAGATTCAGCAGAGTCCTCAAGCACATACTGACACAGAGGaggtgagtgataattgcgaaccacaaggggaacgaaccatatttactagcaa Alignment from CESAR cTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAag tactcgatcaggaacctgtcctatccccttatggttgtttttgtttctagcTCCTTGGGGACACCAGATAGATTCAGCAGAGTCCTCAAGCACATACTGACACAGAGGaggtgagtgataattgcgaaccacaaggggaacgaaccatatttactagcaa Alignment from Spaln_aa2Genome CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG tactcgatcaggaacctgtcctatccccttatggttgtttttgtttctagCTCCTTGGGGACACCAGATAGATTCAGCAGAGTCCTCAAGCACATACTGACACAGAGGAGgtgagtgataattgcgaaccacaaggggaacgaaccatatttactagcaa Alignment from Spaln_nt2Genome CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG tactcgatcaggaacctgtcctatccccttatggttgtttttgtttctagCTCCTTGGGGACACCAGATAGATTCAGCAGAGTCCTCAAGCACATACTGACACAGAGGAGgtgagtgataattgcgaaccacaaggggaacgaaccatatttactagcaa Alignment from Pairagon CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG tactcgatcaggaacctgtcctatccccttatggttgtttttgtttctagCTCCTTGGGGACACCAGATAGATTCAGCAGAGTCCTCAAGCACATACTGACACAGAGGAGgtgagtgataattgcgaaccacaaggggaacgaaccatatttactagcaa Alignment from Exonerate_protein2genome CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG tactcgatcaggaacctgtcctatccccttatggttgtttttgtttctagCTCCTTGGGGACACCAGATAGATTCAGCAGAGTCCTCAAGCACATACTGACACAGAGGAGgtgagtgataattgcgaaccacaaggggaacgaaccatatttactagcaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG tactcgatcaggaacctgtcctatccccttatggttgtttttgtttctagCTCCTTGGGGACACCAGATAGATTCAGCAGAGTCCTCAAGCACATACTGACACAGAGGAGgtgagtgataattgcgaaccacaaggggaacgaaccatatttactagcaa #### Pola2_ID1326_14 --> 1 - 0 Original Alignment cTCCGGCTCCCACCTTGTCTTTGTCCCGTCTCTGAGGGATGTCCATCATGAGCCAGTATACCCACAGCCGCCTTTCACCTTCTCCGAGCTGTCTCGAGAGGACAAAAAG ctaattctatgtgcgatgtacttacatatctctattgttttctgtttcagcTCTGGTTCCTACCTTGTCTTTGTCCCATCCCTTAGAGATATCTATCATCAGCCTGTATACCCACAGCCAGCTTTCAGCTTCTCTGAGCTGTCTCGAGAGGACAAAAAGgtaggcatgccatactgaagtccacaatctgtcagatgtttgaaagctgc Alignment from CESAR cTCCGGCTCCCACCTTGTCTTTGTCCCGTCTCTGAGGGATGTCCATCATGAGCCAGTATACCCACAGCCGCCTTTCACCTTCTCCGAGCTGTCTCGAGAGGACAAAAAG ctaattctatgtgcgatgtacttacatatctctattgttttctgtttcagcTCTGGTTCCTACCTTGTCTTTGTCCCATCCCTTAGAGATATCTATCATCAGCCTGTATACCCACAGCCAGCTTTCAGCTTCTCTGAGCTGTCTCGAGAGGACAAAAAGgtaggcatgccatactgaagtccacaatctgtcagatgtttgaaagctgc Alignment from Spaln_aa2Genome CTCCGGCTCCCACCTTGTCTTTGTCCCGTCTCTGAGGGATGTCCATCATGAGCCAGTATACCCACAGCCGCCTTTCACCTTCTCCGAGCTGTCTCGAGAGGACAAAAAG ctaattctatgtgcgatgtacttacatatctctattgttttctgtttcagCTCTGGTTCCTACCTTGTCTTTGTCCCATCCCTTAGAGATATCTATCATCAGCCTGTATACCCACAGCCAGCTTTCAGCTTCTCTGAGCTGTCTCGAGAGGACAAAAAGgtaggcatgccatactgaagtccacaatctgtcagatgtttgaaagctgc Alignment from Spaln_nt2Genome CTCCGGCTCCCACCTTGTCTTTGTCCCGTCTCTGAGGGATGTCCATCATGAGCCAGTATACCCACAGCCGCCTTTCACCTTCTCCGAGCTGTCTCGAGAGGACAAAAAG ctaattctatgtgcgatgtacttacatatctctattgttttctgtttcagCTCTGGTTCCTACCTTGTCTTTGTCCCATCCCTTAGAGATATCTATCATCAGCCTGTATACCCACAGCCAGCTTTCAGCTTCTCTGAGCTGTCTCGAGAGGACAAAAAGgtaggcatgccatactgaagtccacaatctgtcagatgtttgaaagctgc Alignment from Pairagon CTCCGGCTCCCACCTTGTCTTTGTCCCGTCTCTGAGGGATGTCCATCATGAGCCAGTATACCCACAGCCGCCTTTCACCTTCTCCGAGCTGTCTCGAGAGGACAAAAAG ctaattctatgtgcgatgtacttacatatctctattgttttctgtttcagCTCTGGTTCCTACCTTGTCTTTGTCCCATCCCTTAGAGATATCTATCATCAGCCTGTATACCCACAGCCAGCTTTCAGCTTCTCTGAGCTGTCTCGAGAGGACAAAAAGgtaggcatgccatactgaagtccacaatctgtcagatgtttgaaagctgc Alignment from Exonerate_protein2genome ctaattctatgtgcgatgtacttacatatctctattgttttctgtttcagctctggttcctaccttgtctttgtcccatcccttagagatatctatcatcagcctgtatacccacagccagctttcagcttctctgagctgtctcgagaggacaaaaaggtaggcatgccatactgaagtccacaatctgtcagatgtttgaaagctgc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTCCGGCTCCCACCTTGTCTTTGTCCCGTCTCTGAGGGATGTCCATCATGAGCCAGTATACCCACAGCCGCCTTTCACCTTCTCCGAGCTGTCTCGAGAGGACAAAAAG ctaattctatgtgcgatgtacttacatatctctattgttttctgtttcagCTCTGGTTCCTACCTTGTCTTTGTCCCATCCCTTAGAGATATCTATCATCAGCCTGTATACCCACAGCCAGCTTTCAGCTTCTCTGAGCTGTCTCGAGAGGACAAAAAGgtaggcatgccatactgaagtccacaatctgtcagatgtttgaaagctgc #### Pola2_ID1336_5 --> 0 - 2 Original Alignment GGTCCTCTCAAGCGAGTTAGCAGCACCCCAGAAACCCCCCTAACCAAAAGGAGCGTCGCTGCTCGCAGCCCACGTCAGCTTCTCTCACCGTCAAGTTTCTCCCCGag atgtctcaagtacagtagatagtggtttaaataccctgtatttcctgcagGGCCCCCTCAAGCGAGTTAGCAGTACACCAAAAACCCCTTTAGCCAAGAGAAGTGTCTCAGCTCGTAGCCCATGTCAACTTCTCTCACCATCAAGTTATTCTCCAatgtatccagagccagcttgagtgctcacaaagcagtttcaactccactgat Alignment from CESAR GGTCCTCTCAAGCGAGTTAGCAGCACCCCAGAAACCCCCCTAACCAAAAGGAGCGTCGCTGCTCGCAGCCCACGTCAGCTTCTCTCACCGTCAAGTTTCTCCCCGag atgtctcaagtacagtagatagtggtttaaataccctgtatttcctgcagGGCCCCCTCAAGCGAGTTAGCAGTACACCAAAAACCCCTTTAGCCAAGAGAAGTGTCTCAGCTCGTAGCCCATGTCAACTTCTCTCACCATCAAGTTATTCTCCAatgtatccagagccagcttgagtgctcacaaagcagtttcaactccactgat Alignment from Spaln_aa2Genome GGTCCTCTCAAGCGAGTTAGCAGCACCCCAGAAACCCCCCTAACCAAAAGGAGCGTCGCTGCTCGCAGCCCACGTCAGCTTCTCTCACCGTCAAGTTTCTCCCCGAG atgtctcaagtacagtagatagtggtttaaataccctgtatttcctgcagGGCCCCCTCAAGCGAGTTAGCAGTACACCAAAAACCCCTTTAGCCAAGAGAAGTGTCTCAGCTCGTAGCCCATGTCAACTTCTCTCACCATCAAGTTATTCTCCAATgtatccagagccagcttgagtgctcacaaagcagtttcaactccactgat Alignment from Spaln_nt2Genome GGTCCTCTCAAGCGAGTTAGCAGCACCCCAGAAACCCCCCTAACCAAAAGGAGCGTCGCTGCTCGCAGCCCACGTCAGCTTCTCTCACCGTCAAGTTTCTCCCCGAG atgtctcaagtacagtagatagtggtttaaataccctgtatttcctgcagGGCCCCCTCAAGCGAGTTAGCAGTACACCAAAAACCCCTTTAGCCAAGAGAAGTGTCTCAGCTCGTAGCCCATGTCAACTTCTCTCACCATCAAGTTATTCTCCAATgtatccagagccagcttgagtgctcacaaagcagtttcaactccactgat Alignment from Pairagon GGTCCTCTCAAGCGAGTTAGCAGCACCCCAGAAACCCCCCTAACCAAAAGGAGCGTCGCTGCTCGCAGCCCACGTCAGCTTCTCTCACCGTCAAGTTTCTCCCCGAG atgtctcaagtacagtagatagtggtttaaataccctgtatttcctgcagGGCCCCCTCAAGCGAGTTAGCAGTACACCAAAAACCCCTTTAGCCAAGAGAAGTGTCTCAGCTCGTAGCCCATGTCAACTTCTCTCACCATCAAGTTATTCTCCAATgtatccagagccagcttgagtgctcacaaagcagtttcaactccactgat Alignment from Exonerate_protein2genome GGTCCTCTCAAGCGAGTTAGCAGCACCCCAGAAACCCCCCTAACCAAAAGGAGCGTCGCTGCTCGCAGCCCACGTCAGCTTCTCTCACCGTCAAGTTTCTCCCCGAG atgtctcaagtacagtagatagtggtttaaataccctgtatttcctgcagGGCCCCCTCAAGCGAGTTAGCAGTACACCAAAAACCCCTTTAGCCAAGAGAAGTGTCTCAGCTCGTAGCCCATGTCAACTTCTCTCACCATCAAGTTATTCTCCAATgtatccagagccagcttgagtgctcacaaagcagtttcaactccactgat Alignment from Exonerate_coding2genome GGTCCTCTCAAGCGAGTTAGCAGCACCCCAGAAACCCCCCTAACCAAAAGGAGCGTCGCTGCTCGCAGCCCACGTCAGCTTCTCTCACCGTCAAGTTTCTCCCCGAG atgtctcaagtacagtagatagtggtttaaataccctgtatttcctgcagGGCCCCCTCAAGCGAGTTAGCAGTACACCAAAAACCCCTTTAGCCAAGAGAAGTGTCTCAGCTCGTAGCCCATGTCAACTTCTCTCACCATCAAGTTATTCTCCAATgtatccagagccagcttgagtgctcacaaagcagtttcaactccactgat Alignment from GeneWise GGTCCTCTCAAGCGAGTTAGCAGCACCCCAGAAACCCCCCTAACCAAAAGGAGCGTCGCTGCTCGCAGCCCACGTCAGCTTCTCTCACCGTCAAGTTTCTCCCCGAG atgtctcaagtacagtagatagtggtttaaataccctgtatttcctgcagGGCCCCCTCAAGCGAGTTAGCAGTACACCAAAAACCCCTTTAGCCAAGAGAAGTGTCTCAGCTCGTAGCCCATGTCAACTTCTCTCACCATCAAGTTATTCTCCAATgtatccagagccagcttgagtgctcacaaagcagtttcaactccactgat #### Pola2_ID1338_3 --> 0 - 2 Original Alignment GTTCTGAACAAAAAACTCTCCAAAGCCTGGCACAGTGCCTCCAAAGACAGTGGGCATGCAGGAACCAGAGACATTGTTTCTATACAAGAGct taacctatgtaccacatgctttcacgattctgattcctcttcccttttagGTTCTGAATGAAAAACTTTCTAAGGCCTGGCACAGTGCCTCTAAAGATAGTGGGCATGCAGGGACCAGGGACAATGTTTCAATACAAGAActgtgagtattttgtttaaccttatcaacagtctcagctctcctttcactcc Alignment from CESAR GTTCTGAACAAAAAACTCTCCAAAGCCTGGCACAGTGCCTCCAAAGACAGTGGGCATGCAGGAACCAGAGACATTGTTTCTATACAAGAGct taacctatgtaccacatgctttcacgattctgattcctcttcccttttagGTTCTGAATGAAAAACTTTCTAAGGCCTGGCACAGTGCCTCTAAAGATAGTGGGCATGCAGGGACCAGGGACAATGTTTCAATACAAGAActgtgagtattttgtttaaccttatcaacagtctgcccctcccaccctggtc Alignment from Spaln_aa2Genome GTTCTGAACAAAAAACTCTCCAAAGCCTGGCACAGTGCCTCCAAAGACAGTGGGCATGCAGGAACCAGAGACATTGTTTCTATACAAGAGCT taacctatgtaccacatgctttcacgattctgattcctcttcccttttagGTTCTGAATGAAAAACTTTCTAAGGCCTGGCACAGTGCCTCTAAAGATAGTGGGCATGCAGGGACCAGGGACAATGTTTCAATACAAGAACTgtgagtattttgtttaaccttatcaacagtctcagctctcctttcactcc Alignment from Spaln_nt2Genome GTTCTGAACAAAAAACTCTCCAAAGCCTGGCACAGTGCCTCCAAAGACAGTGGGCATGCAGGAACCAGAGACATTGTTTCTATACAAGAGCT taacctatgtaccacatgctttcacgattctgattcctcttcccttttagGTTCTGAATGAAAAACTTTCTAAGGCCTGGCACAGTGCCTCTAAAGATAGTGGGCATGCAGGGACCAGGGACAATGTTTCAATACAAGAACTgtgagtattttgtttaaccttatcaacagtctcagctctcctttcactcc Alignment from Pairagon GTTCTGAACAAAAAACTCTCCAAAGCCTGGCACAGTGCCTCCAAAGACAGTGGGCATGCAGGAACCAGAGACATTGTTTCTATACAAGAGCT taacctatgtaccacatgctttcacgattctgattcctcttcccttttagGTTCTGAATGAAAAACTTTCTAAGGCCTGGCACAGTGCCTCTAAAGATAGTGGGCATGCAGGGACCAGGGACAATGTTTCAATACAAGAACTgtgagtattttgtttaaccttatcaacagtctcagctctcctttcactcc Alignment from Exonerate_protein2genome GTTCTGAACAAAAAACTCTCCAAAGCCTGGCACAGTGCCTCCAAAGACAGTGGGCATGCAGGAACCAGAGACATTGTTTCTATACAAGAGCT taacctatgtaccacatgctttcacgattctgattcctcttcccttttagGTTCTGAATGAAAAACTTTCTAAGGCCTGGCACAGTGCCTCTAAAGATAGTGGGCATGCAGGGACCAGGGACAATGTTTCAATACAAGAACTgtgagtattttgtttaaccttatcaacagtctcagctctcctttcactcc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTTCTGAACAAAAAACTCTCCAAAGCCTGGCACAGTGCCTCCAAAGACAGTGGGCATGCAGGAACCAGAGACATTGTTTCTATACAAGAGCT taacctatgtaccacatgctttcacgattctgattcctcttcccttttagGTTCTGAATGAAAAACTTTCTAAGGCCTGGCACAGTGCCTCTAAAGATAGTGGGCATGCAGGGACCAGGGACAATGTTTCAATACAAGAACTgtgagtattttgtttaaccttatcaacagtctcagctctcctttcactcc #### Poll_ID9485_2 --> 2 - 2 Original Alignment gaTGGCTGAGCTCCCTGAGAGCCCACATTATGCCCGCTGGCATTGGACGTGCCCGGGCTGAACTCTTTGAGAAGCAGATTATCCACCATGGCGGCCAGGTGTGCTCTGCCCAGGCCCCAGGAGTCACTCACATTGTGGTGGATGAAGACATGGACTATGAGCGGGCTCTCCGGCTCCTCAGGTTGCCCCAGCTACCCCCTGGTGCCCAGCTGGTGAAGTCCACCTGGCTGAGCTTGTGCCTGCAGGAGGGAAGGCTGACAGACACGGAAGGATTCAGCCTTCCCATGCCCAAGag ggaaattactgcacccaccaaaccgttgggattgcaactgtgcattgcagggTGGCTTAGTTCA------GCACACATTATGCCGACTGGCCTTGGATGTGCTGAAACTGAATTATTTGAGAAGCAGATAATACACCATGAGGGGCAGGTATGCTCTACCCAGGCCCCTGGTGTCACCCGTATATTGGTGGAGGAAGACATGGACTATGAGCGGTCCCTCCAGCTCCTCCAGTTGCCCCAGTTAACCCCTGGTGCTCAGCTTGTGAAGTCCACTTGGTTGAGCTTATGCCTGCAGGAGGGAAGGATTACAGATACAGAGGGATTTAGTCTCCCGATGACAAAGaggtaagaatggtattgatgaaggtaatttacagactctatgccataatcaa Alignment from CESAR gaTGGCTGAGCTCCCTGAGAGCCCACATTATGCCCGCTGGCATTGGACGTGCCCGGGCTGAACTCTTTGAGAAGCAGATTATCCACCATGGCGGCCAGGTGTGCTCTGCCCAGGCCCCAGGAGTCACTCACATTGTGGTGGATGAAGACATGGACTATGAGCGGGCTCTCCGGCTCCTCAGGTTGCCCCAGCTACCCCCTGGTGCCCAGCTGGTGAAGTCCACCTGGCTGAGCTTGTGCCTGCAGGAGGGAAGGCTGACAGACACGGAAGGATTCAGCCTTCCCATGCCCAAGag ggaaattactgcacccaccaaaccgttgggattgcaactgtgcattgcagggTGGCTTAGTTCA------GCACACATTATGCCGACTGGCCTTGGATGTGCTGAAACTGAATTATTTGAGAAGCAGATAATACACCATGAGGGGCAGGTATGCTCTACCCAGGCCCCTGGTGTCACCCGTATATTGGTGGAGGAAGACATGGACTATGAGCGGTCCCTCCAGCTCCTCCAGTTGCCCCAGTTAACCCCTGGTGCTCAGCTTGTGAAGTCCACTTGGTTGAGCTTATGCCTGCAGGAGGGAAGGATTACAGATACAGAGGGATTTAGTCTCCCGATGACAAAGaggtaagaatggtattgatgaaggtaatttacagactctatgccataatcaa Alignment from Spaln_aa2Genome GATGGCTGAGCTCCCTGAGAGCCCACATTATGCCCGCTGGCATTGGACGTGCCCGGGCTGAACTCTTTGAGAAGCAGATTATCCACCATGGCGGCCAGGTGTGCTCTGCCCAGGCCCCAGGAGTCACTCACATTGTGGTGGATGAAGACATGGACTATGAGCGGGCTCTCCGGCTCCTCAGGTTGCCCCAGCTACCCCCTGGTGCCCAGCTGGTGAAGTCCACCTGGCTGAGCTTGTGCCTGCAGGAGGGAAGGCTGACAGACACGGAAGGATTCAGCCTTCCCATGCCCAAGAG ggaaattactgcacccaccaaaccgttgggattgcaactgtgcattgcagGGTGGCTTAGTTCA------GCACACATTATGCCGACTGGCCTTGGATGTGCTGAAACTGAATTATTTGAGAAGCAGATAATACACCATGAGGGGCAGGTATGCTCTACCCAGGCCCCTGGTGTCACCCGTATATTGGTGGAGGAAGACATGGACTATGAGCGGTCCCTCCAGCTCCTCCAGTTGCCCCAGTTAACCCCTGGTGCTCAGCTTGTGAAGTCCACTTGGTTGAGCTTATGCCTGCAGGAGGGAAGGATTACAGATACAGAGGGATTTAGTCTCCCGATGACAAAGAGgtaagaatggtattgatgaaggtaatttacagactctatgccataatcaa Alignment from Spaln_nt2Genome GATGGCTGAGCTCCCTGAGAGCCCACATTATGCCCGCTGGCATTGGACGTGCCCGGGCTGAACTCTTTGAGAAGCAGATTATCCACCATGGCGGCCAGGTGTGCTCTGCCCAGGCCCCAGGAGTCACTCACATTGTGGTGGATGAAGACATGGACTATGAGCGGGCTCTCCGGCTCCTCAGGTTGCCCCAGCTACCCCCTGGTGCCCAGCTGGTGAAGTCCACCTGGCTGAGCTTGTGCCTGCAGGAGGGAAGGCTGACAGACACGGAAGGATTCAGCCTTCCCATGCCCAAGAG ggaaattactgcacccaccaaaccgttgggattgcaactgtgcattgcagGGTGGCTTAGTTC------AGCACACATTATGCCGACTGGCCTTGGATGTGCTGAAACTGAATTATTTGAGAAGCAGATAATACACCATGAGGGGCAGGTATGCTCTACCCAGGCCCCTGGTGTCACCCGTATATTGGTGGAGGAAGACATGGACTATGAGCGGTCCCTCCAGCTCCTCCAGTTGCCCCAGTTAACCCCTGGTGCTCAGCTTGTGAAGTCCACTTGGTTGAGCTTATGCCTGCAGGAGGGAAGGATTACAGATACAGAGGGATTTAGTCTCCCGATGACAAAGAGgtaagaatggtattgatgaaggtaatttacagactctatgccataatcaa Alignment from Pairagon GATGGCTGAGCTCCCTGAGAGCCCACATTATGCCCGCTGGCATTGGACGTGCCCGGGCTGAACTCTTTGAGAAGCAGATTATCCACCATGGCGGCCAGGTGTGCTCTGCCCAGGCCCCAGGAGTCACTCACATTGTGGTGGATGAAGACATGGACTATGAGCGGGCTCTCCGGCTCCTCAGGTTGCCCCAGCTACCCCCTGGTGCCCAGCTGGTGAAGTCCACCTGGCTGAGCTTGTGCCTGCAGGAGGGAAGGCTGACAGACACGGAAGGATTCAGCCTTCCCATGCCCAAGAG ggaaattactgcacccaccaaaccgttgggattgcaactgtgcattgcagGGTGGCTTAGTTC------AGCACACATTATGCCGACTGGCCTTGGATGTGCTGAAACTGAATTATTTGAGAAGCAGATAATACACCATGAGGGGCAGGTATGCTCTACCCAGGCCCCTGGTGTCACCCGTATATTGGTGGAGGAAGACATGGACTATGAGCGGTCCCTCCAGCTCCTCCAGTTGCCCCAGTTAACCCCTGGTGCTCAGCTTGTGAAGTCCACTTGGTTGAGCTTATGCCTGCAGGAGGGAAGGATTACAGATACAGAGGGATTTAGTCTCCCGATGACAAAGAGgtaagaatggtattgatgaaggtaatttacagactctatgccataatcaa Alignment from Exonerate_protein2genome GATGGCTGAGCTCCCTGAGAGCCCACATTATGCCCGCTGGCATTGGACGTGCCCGGGCTGAACTCTTTGAGAAGCAGATTATCCACCATGGCGGCCAGGTGTGCTCTGCCCAGGCCCCAGGAGTCACTCACATTGTGGTGGATGAAGACATGGACTATGAGCGGGCTCTCCGGCTCCTCAGGTTGCCCCAGCTACCCCCTGGTGCCCAGCTGGTGAAGTCCACCTGGCTGAGCTTGTGCCTGCAGGAGGGAAGGCTGACAGACACGGAAGGATTCAGCCTTCCCATGCCCAAGAG ggaaattactgcacccaccaaaccgttgggattgcaactgtgcattgcagGGTGGCTTAGTTCA------GCACACATTATGCCGACTGGCCTTGGATGTGCTGAAACTGAATTATTTGAGAAGCAGATAATACACCATGAGGGGCAGGTATGCTCTACCCAGGCCCCTGGTGTCACCCGTATATTGGTGGAGGAAGACATGGACTATGAGCGGTCCCTCCAGCTCCTCCAGTTGCCCCAGTTAACCCCTGGTGCTCAGCTTGTGAAGTCCACTTGGTTGAGCTTATGCCTGCAGGAGGGAAGGATTACAGATACAGAGGGATTTAGTCTCCCGATGACAAAGAGgtaagaatggtattgatgaaggtaatttacagactctatgccataatcaa Alignment from Exonerate_coding2genome GATGGCTGAGCTCCCTGAGAGCCCACATTATGCCCGCTGGCATTGGACGTGCCCGGGCTGAACTCTTTGAGAAGCAGATTATCCACCATGGCGGCCAGGTGTGCTCTGCCCAGGCCCCAGGAGTCACTCACATTGTGGTGGATGAAGACATGGACTATGAGCGGGCTCTCCGGCTCCTCAGGTTGCCCCAGCTACCCCCTGGTGCCCAGCTGGTGAAGTCCACCTGGCTGAGCTTGTGCCTGCAGGAGGGAAGGCTGACAGACACGGAAGGATTCAGCCTTCCCATGCCCAAGAG ggaaattactgcacccaccaaaccgttgggattgcaactgtgcattgcagGGTGGCTTAGTTCA------GCACACATTATGCCGACTGGCCTTGGATGTGCTGAAACTGAATTATTTGAGAAGCAGATAATACACCATGAGGGGCAGGTATGCTCTACCCAGGCCCCTGGTGTCACCCGTATATTGGTGGAGGAAGACATGGACTATGAGCGGTCCCTCCAGCTCCTCCAGTTGCCCCAGTTAACCCCTGGTGCTCAGCTTGTGAAGTCCACTTGGTTGAGCTTATGCCTGCAGGAGGGAAGGATTACAGATACAGAGGGATTTAGTCTCCCGATGACAAAGAGgtaagaatggtattgatgaaggtaatttacagactctatgccataatcaa Alignment from GeneWise GATGGCTGAGCTCCCTGAGAGCCCACATTATGCCCGCTGGCATTGGACGTGCCCGGGCTGAACTCTTTGAGAAGCAGATTATCCACCATGGCGGCCAGGTGTGCTCTGCCCAGGCCCCAGGAGTCACTCACATTGTGGTGGATGAAGACATGGACTATGAGCGGGCTCTCCGGCTCCTCAGGTTGCCCCAGCTACCCCCTGGTGCCCAGCTGGTGAAGTCCACCTGGCTGAGCTTGTGCCTGCAGGAGGGAAGGCTGACAGACACGGAAGGATTCAGCCTTCCCATGCCCAAGAG ggaaattactgcacccaccaaaccgttgggattgcaactgtgcattgcagGGTGGCTTAGTTCA------GCACACATTATGCCGACTGGCCTTGGATGTGCTGAAACTGAATTATTTGAGAAGCAGATAATACACCATGAGGGGCAGGTATGCTCTACCCAGGCCCCTGGTGTCACCCGTATATTGGTGGAGGAAGACATGGACTATGAGCGGTCCCTCCAGCTCCTCCAGTTGCCCCAGTTAACCCCTGGTGCTCAGCTTGTGAAGTCCACTTGGTTGAGCTTATGCCTGCAGGAGGGAAGGATTACAGATACAGAGGGATTTAGTCTCCCGATGACAAAGAGgtaagaatggtattgatgaaggtaatttacagactctatgccataatcaa #### Ppp1r14b_ID1940_3 --> 0 - 0 Original Alignment GAGCTGTTAGTTGACTGTTACAAACCCACTGAG atgagaaaccctgagcccaagaagccatttcttcactgtgtttctttcagCAACTATTAGTTGACTGTTATAAACCCACTGAGgtaagttactgcccctccccacaggcatgaagctgtttctttggatctag Alignment from CESAR GAGCTGTTAGTTGACTGTTACAAACCCACTGAG atgagaaaccctgagcccaagaagccatttcttcactgtgtttctttcagCAACTATTAGTTGACTGTTATAAACCCACTGAGgtaagttactgcccctccccacaggcatgaagctgtttctttggatctcc Alignment from Spaln_aa2Genome GAGCTGTTAGTTGACTGTTACAAACCCACTGAG atgagaaaccctgagcccaagaagccatttcttcactgtgtttctttcagCAACTATTAGTTGACTGTTATAAACCCACTGAGgtaagttactgcccctccccacaggcatgaagctgtttctttggatctag Alignment from Spaln_nt2Genome GAGCTGTTAGTTGACTGTTACAAACCCACTGAG atgagaaaccctgagcccaagaagccatttcttcactgtgtttctttcagCAACTATTAGTTGACTGTTATAAACCCACTGAGgtaagttactgcccctccccacaggcatgaagctgtttctttggatctag Alignment from Pairagon GAGCTGTTAGTTGACTGTTACAAACCCACTGAG atgagaaaccctgagcccaagaagccatttcttcactgtgtttctttcagCAACTATTAGTTGACTGTTATAAACCCACTGAGgtaagttactgcccctccccacaggcatgaagctgtttctttggatctag Alignment from Exonerate_protein2genome GAGCTGTTAGTTGACTGTTACAAACCCACTGAG atgagaaaccctgagcccaagaagccatttcttcactgtgtttctttcagCAACTATTAGTTGACTGTTATAAACCCACTGAGgtaagttactgcccctccccacaggcatgaagctgtttctttggatctag Alignment from Exonerate_coding2genome GAGCTGTTAGTTGACTGTTACAAACCCACTGAG atgagaaaccctgagcccaagaagccatttcttcactgtgtttctttcagCAACTATTAGTTGACTGTTATAAACCCACTGAGgtaagttactgcccctccccacaggcatgaagctgtttctttggatctag Alignment from GeneWise GAGCTGTTAGTTGACTGTTACAAACCCACTGAG atgagaaaccctgagcccaagaagccatttcttcactgtgtttctttcagCAACTATTAGTTGACTGTTATAAACCCACTGAGgtaagttactgcccctccccacaggcatgaagctgtttctttggatctag #### Ppp1r32_ID2843_8 --> 0 - 0 Original Alignment GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acactctgttgctccatgtggtgcaactccttgttttctttgccaataagGGGAGTGATTTCTTGCCTGTGCTGTCCAGAGGATCTGATCGGGACACAGGATTTAGCCGAGTAAATGAAAGAACTCTAAAGCTAAGAgttcgtatgactcagggtaagacaatgtatagttgtctctgtctacaccc Alignment from CESAR GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acactctgttgctccatgtggtgcaactccttgttttctttgccaataagGGGAGTGATTTCTTGCCTGTGCTGTCCAGAGGATCTGATCGGGACACAGGATTTAGCCGAGTAAATGAAAGAACTCTAAAGCTAAGAgttcgtatgactcagggtaagacaatgtatagttgtctctgtctacaccc Alignment from Spaln_aa2Genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acactctgttgctccatgtggtgcaactccttgttttctttgccaataagGGGAGTGATTTCTTGCCTGTGCTGTCCAGAGGATCTGATCGGGACACAGGATTTAGCCGAGTAAATGAAAGAACTCTAAAGCTAAGAgttcgtatgactcagggtaagacaatgtatagttgtctctgtctacaccc Alignment from Spaln_nt2Genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acactctgttgctccatgtggtgcaactccttgttttctttgccaataagGGGAGTGATTTCTTGCCTGTGCTGTCCAGAGGATCTGATCGGGACACAGGATTTAGCCGAGTAAATGAAAGAACTCTAAAGCTAAGAgttcgtatgactcagggtaagacaatgtatagttgtctctgtctacaccc Alignment from Pairagon GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acactctgttgctccatgtggtgcaactccttgttttctttgccaataagGGGAGTGATTTCTTGCCTGTGCTGTCCAGAGGATCTGATCGGGACACAGGATTTAGCCGAGTAAATGAAAGAACTCTAAAGCTAAGAgttcgtatgactcagggtaagacaatgtatagttgtctctgtctacaccc Alignment from Exonerate_protein2genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acactctgttgctccatgtggtgcaactccttgttttctttgccaataagGGGAGTGATTTCTTGCCTGTGCTGTCCAGAGGATCTGATCGGGACACAGGATTTAGCCGAGTAAATGAAAGAACTCTAAAGCTAAGAgttcgtatgactcagggtaagacaatgtatagttgtctctgtctacaccc Alignment from Exonerate_coding2genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acactctgttgctccatgtggtgcaactccttgttttctttgccaataagGGGAGTGATTTCTTGCCTGTGCTGTCCAGAGGATCTGATCGGGACACAGGATTTAGCCGAGTAAATGAAAGAACTCTAAAGCTAAGAgttcgtatgactcagggtaagacaatgtatagttgtctctgtctacaccc Alignment from GeneWise GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acactctgttgctccatgtggtgcaactccttgttttctttgccaataagGGGAGTGATTTCTTGCCTGTGCTGTCCAGAGGATCTGATCGGGACACAGGATTTAGCCGAGTAAATGAAAGAACTCTAAAGCTAAGAgttcgtatgactcagggtaagacaatgtatagttgtctctgtctacaccc #### Ppp1r32_ID2846_5 --> 0 - 1 Original Alignment GGTCCACGCTTCATGACTTCTGAATACAATTCCAAGTATATCAAGGAGTCTCCAAACCACCCAg tggacatctaaaagtggataggtgtttcttggggaatctgtatctggcagGGACCATGGTTCATGACTTCTGAATACAATGCTAAGTATATAAAGGAATCTCCAATCCACCCTggtgagtcctctcattttggtcttgtttctatgatgatctatcatatcctc Alignment from CESAR GGTCCACGCTTCATGACTTCTGAATACAATTCCAAGTATATCAAGGAGTCTCCAAACCACCCAg tggacatctaaaagtggataggtgtttcttggggaatctgtatctggcagGGACCATGGTTCATGACTTCTGAATACAATGCTAAGTATATAAAGGAATCTCCAATCCACCCTggtgagtcctctcattttggtcttgtttctatgatgatctatcatatcctc Alignment from Spaln_aa2Genome GGTCCACGCTTCATGACTTCTGAATACAATTCCAAGTATATCAAGGAGTCTCCAAACCACCCAG tggacatctaaaagtggataggtgtttcttggggaatctgtatctggcagGGACCATGGTTCATGACTTCTGAATACAATGCTAAGTATATAAAGGAATCTCCAATCCACCCTGgtgagtcctctcattttggtcttgtttctatgatgatctatcatatcctc Alignment from Spaln_nt2Genome GGTCCACGCTTCATGACTTCTGAATACAATTCCAAGTATATCAAGGAGTCTCCAAACCACCCAG tggacatctaaaagtggataggtgtttcttggggaatctgtatctggcagGGACCATGGTTCATGACTTCTGAATACAATGCTAAGTATATAAAGGAATCTCCAATCCACCCTGgtgagtcctctcattttggtcttgtttctatgatgatctatcatatcctc Alignment from Pairagon GGTCCACGCTTCATGACTTCTGAATACAATTCCAAGTATATCAAGGAGTCTCCAAACCACCCAG tggacatctaaaagtggataggtgtttcttggggaatctgtatctggcagGGACCATGGTTCATGACTTCTGAATACAATGCTAAGTATATAAAGGAATCTCCAATCCACCCTGgtgagtcctctcattttggtcttgtttctatgatgatctatcatatcctc Alignment from Exonerate_protein2genome GGTCCACGCTTCATGACTTCTGAATACAATTCCAAGTATATCAAGGAGTCTCCAAACCACCCAG tggacatctaaaagtggataggtgtttcttggggaatctgtatctggcagGGACCATGGTTCATGACTTCTGAATACAATGCTAAGTATATAAAGGAATCTCCAATCCACCCTGgtgagtcctctcattttggtcttgtttctatgatgatctatcatatcctc Alignment from Exonerate_coding2genome GGTCCACGCTTCATGACTTCTGAATACAATTCCAAGTATATCAAGGAGTCTCCAAACCACCCAG tggacatctaaaagtggataggtgtttcttggggaatctgtatctggcagGGACCATGGTTCATGACTTCTGAATACAATGCTAAGTATATAAAGGAATCTCCAATCCACCCTGgtgagtcctctcattttggtcttgtttctatgatgatctatcatatcctc Alignment from GeneWise GGTCCACGCTTCATGACTTCTGAATACAATTCCAAGTATATCAAGGAGTCTCCAAACCACCCAG tggacatctaaaagtggataggtgtttcttggggaatctgtatctggcagGGACCATGGTTCATGACTTCTGAATACAATGCTAAGTATATAAAGGAATCTCCAATCCACCCTGgtgagtcctctcattttggtcttgtttctatgatgatctatcatatcctc #### Ppp1r32_ID2847_4 --> 0 - 0 Original Alignment GTCAGGAAGGTCCACTTCGACACCCAGGATCACGGGCCTCAGACTATCACAGGACTGGAGCCCAAGGAGGTTCCCCTGATCCACCAGCAGCAGGGCAAGGGCTCCACGGAGTGGGAGAACTCGCACTAT ttctatcgacaacactcaaggtcactgatttttgttttgtttccttgtagGACAGGAAGGTACAGTTTGGTACTCAGGATCATGGGCCTCAGACAATAATAGGATTGGAAACCAAGGAGATTCCCTTAATCCACCAGCAGCAAGGGAAGGGCTCCACAGAGTGGGAGAACTTGCATTATgtacagcaaatacctgccagggagctattcctaaggccctgccatgtcat Alignment from CESAR GTCAGGAAGGTCCACTTCGACACCCAGGATCACGGGCCTCAGACTATCACAGGACTGGAGCCCAAGGAGGTTCCCCTGATCCACCAGCAGCAGGGCAAGGGCTCCACGGAGTGGGAGAACTCGCACTAT ttctatcgacaacactcaaggtcactgatttttgttttgtttccttgtagGACAGGAAGGTACAGTTTGGTACTCAGGATCATGGGCCTCAGACAATAATAGGATTGGAAACCAAGGAGATTCCCTTAATCCACCAGCAGCAAGGGAAGGGCTCCACAGAGTGGGAGAACTTGCATTATgtacagcaaatacctgccagggagctattcctaaggccctgccatgtcat Alignment from Spaln_aa2Genome GTCAGGAAGGTCCACTTCGACACCCAGGATCACGGGCCTCAGACTATCACAGGACTGGAGCCCAAGGAGGTTCCCCTGATCCACCAGCAGCAGGGCAAGGGCTCCACGGAGTGGGAGAACTCGCACTAT ttctatcgacaacactcaaggtcactgatttttgttttgtttccttgtagGACAGGAAGGTACAGTTTGGTACTCAGGATCATGGGCCTCAGACAATAATAGGATTGGAAACCAAGGAGATTCCCTTAATCCACCAGCAGCAAGGGAAGGGCTCCACAGAGTGGGAGAACTTGCATTATgtacagcaaatacctgccagggagctattcctaaggccctgccatgtcat Alignment from Spaln_nt2Genome GTCAGGAAGGTCCACTTCGACACCCAGGATCACGGGCCTCAGACTATCACAGGACTGGAGCCCAAGGAGGTTCCCCTGATCCACCAGCAGCAGGGCAAGGGCTCCACGGAGTGGGAGAACTCGCACTAT ttctatcgacaacactcaaggtcactgatttttgttttgtttccttgtagGACAGGAAGGTACAGTTTGGTACTCAGGATCATGGGCCTCAGACAATAATAGGATTGGAAACCAAGGAGATTCCCTTAATCCACCAGCAGCAAGGGAAGGGCTCCACAGAGTGGGAGAACTTGCATTATgtacagcaaatacctgccagggagctattcctaaggccctgccatgtcat Alignment from Pairagon GTCAGGAAGGTCCACTTCGACACCCAGGATCACGGGCCTCAGACTATCACAGGACTGGAGCCCAAGGAGGTTCCCCTGATCCACCAGCAGCAGGGCAAGGGCTCCACGGAGTGGGAGAACTCGCACTAT ttctatcgacaacactcaaggtcactgatttttgttttgtttccttgtagGACAGGAAGGTACAGTTTGGTACTCAGGATCATGGGCCTCAGACAATAATAGGATTGGAAACCAAGGAGATTCCCTTAATCCACCAGCAGCAAGGGAAGGGCTCCACAGAGTGGGAGAACTTGCATTATgtacagcaaatacctgccagggagctattcctaaggccctgccatgtcat Alignment from Exonerate_protein2genome GTCAGGAAGGTCCACTTCGACACCCAGGATCACGGGCCTCAGACTATCACAGGACTGGAGCCCAAGGAGGTTCCCCTGATCCACCAGCAGCAGGGCAAGGGCTCCACGGAGTGGGAGAACTCGCACTAT ttctatcgacaacactcaaggtcactgatttttgttttgtttccttgtagGACAGGAAGGTACAGTTTGGTACTCAGGATCATGGGCCTCAGACAATAATAGGATTGGAAACCAAGGAGATTCCCTTAATCCACCAGCAGCAAGGGAAGGGCTCCACAGAGTGGGAGAACTTGCATTATgtacagcaaatacctgccagggagctattcctaaggccctgccatgtcat Alignment from Exonerate_coding2genome GTCAGGAAGGTCCACTTCGACACCCAGGATCACGGGCCTCAGACTATCACAGGACTGGAGCCCAAGGAGGTTCCCCTGATCCACCAGCAGCAGGGCAAGGGCTCCACGGAGTGGGAGAACTCGCACTAT ttctatcgacaacactcaaggtcactgatttttgttttgtttccttgtagGACAGGAAGGTACAGTTTGGTACTCAGGATCATGGGCCTCAGACAATAATAGGATTGGAAACCAAGGAGATTCCCTTAATCCACCAGCAGCAAGGGAAGGGCTCCACAGAGTGGGAGAACTTGCATTATgtacagcaaatacctgccagggagctattcctaaggccctgccatgtcat Alignment from GeneWise GTCAGGAAGGTCCACTTCGACACCCAGGATCACGGGCCTCAGACTATCACAGGACTGGAGCCCAAGGAGGTTCCCCTGATCCACCAGCAGCAGGGCAAGGGCTCCACGGAGTGGGAGAACTCGCACTAT ttctatcgacaacactcaaggtcactgatttttgttttgtttccttgtagGACAGGAAGGTACAGTTTGGTACTCAGGATCATGGGCCTCAGACAATAATAGGATTGGAAACCAAGGAGATTCCCTTAATCCACCAGCAGCAAGGGAAGGGCTCCACAGAGTGGGAGAACTTGCATTATgtacagcaaatacctgccagggagctattcctaaggccctgccatgtcat #### Ppp1r32_ID2849_2 --> 2 - 2 Original Alignment gtCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAgg gcatgctgctcattacctgagttctggttctcccccaacccccactgcaggtCGGGAGGAGTTTAAGCCCCGCCTCGGAAGTCATGTATGTGCAGGCTACAAATCCAACTATCGGCCTCTGGTCTCCTACCAACCACACCAGGATACCCTGGACAATCCGGCAATAgggtatgtttggctgcacatatcttatcttaagtcttgagaatctcataccc Alignment from CESAR gtCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAgg gcatgctgctcattacctgagttctggttctcccccaacccccactgcaggtCGGGAGGAGTTTAAGCCCCGCCTCGGAAGTCATGTATGTGCAGGCTACAAATCCAACTATCGGCCTCTGGTCTCCTACCAACCACACCAGGATACCCTGGACAATCCGGCAATAgggtatgtttggctgcacatatcttatcttaagtcttgagaatctcataccc Alignment from Spaln_aa2Genome GTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAGG gcatgctgctcattacctgagttctggttctcccccaacccccactgcagGTCGGGAGGAGTTTAAGCCCCGCCTCGGAAGTCATGTATGTGCAGGCTACAAATCCAACTATCGGCCTCTGGTCTCCTACCAACCACACCAGGATACCCTGGACAATCCGGCAATAGGgtatgtttggctgcacatatcttatcttaagtcttgagaatctcataccc Alignment from Spaln_nt2Genome GTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAGG gcatgctgctcattacctgagttctggttctcccccaacccccactgcagGTCGGGAGGAGTTTAAGCCCCGCCTCGGAAGTCATGTATGTGCAGGCTACAAATCCAACTATCGGCCTCTGGTCTCCTACCAACCACACCAGGATACCCTGGACAATCCGGCAATAGGgtatgtttggctgcacatatcttatcttaagtcttgagaatctcataccc Alignment from Pairagon GTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAGG gcatgctgctcattacctgagttctggttctcccccaacccccactgcagGTCGGGAGGAGTTTAAGCCCCGCCTCGGAAGTCATGTATGTGCAGGCTACAAATCCAACTATCGGCCTCTGGTCTCCTACCAACCACACCAGGATACCCTGGACAATCCGGCAATAGGgtatgtttggctgcacatatcttatcttaagtcttgagaatctcataccc Alignment from Exonerate_protein2genome GTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAGG gcatgctgctcattacctgagttctggttctcccccaacccccactgcagGTCGGGAGGAGTTTAAGCCCCGCCTCGGAAGTCATGTATGTGCAGGCTACAAATCCAACTATCGGCCTCTGGTCTCCTACCAACCACACCAGGATACCCTGGACAATCCGGCAATAGGgtatgtttggctgcacatatcttatcttaagtcttgagaatctcataccc Alignment from Exonerate_coding2genome GTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAGG gcatgctgctcattacctgagttctggttctcccccaacccccactgcagGTCGGGAGGAGTTTAAGCCCCGCCTCGGAAGTCATGTATGTGCAGGCTACAAATCCAACTATCGGCCTCTGGTCTCCTACCAACCACACCAGGATACCCTGGACAATCCGGCAATAGGgtatgtttggctgcacatatcttatcttaagtcttgagaatctcataccc Alignment from GeneWise GTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAGG gcatgctgctcattacctgagttctggttctcccccaacccccactgcagGTCGGGAGGAGTTTAAGCCCCGCCTCGGAAGTCATGTATGTGCAGGCTACAAATCCAACTATCGGCCTCTGGTCTCCTACCAACCACACCAGGATACCCTGGACAATCCGGCAATAGGgtatgtttggctgcacatatcttatcttaagtcttgagaatctcataccc #### Ppp6r3_ID71_21 --> 1 - 2 Original Alignment tGAGGAAGAAAAACTGTCTACCTCTCAAGATGCTGCTTGCAAAGATGCAGAAGAGACCCCAGAGCCAGCAGAGGCCAAGTGCACAGCTCCCCTGACTCCCAGCAGTAGTCCCGAGCAAag cttcacccatctggtatgtggtactctttaacctcgatcatctcccttagtGAGGAGGGGAGATTATCTACCACACAAGATGCTGCCTGCAGGGATGCAGAAGAGGCCCCTGAGCCTGCAGAGGCCAACTGCCCAGCTCCTCTGACTCCCAGTAGTAGTTCAGCACGAaggtgagtagatggtcagacttagacgcgcatgagaattttagttgtgtgtg Alignment from CESAR tGAGGAAGAAAAACTGTCTACCTCTCAAGATGCTGCTTGCAAAGATGCAGAAGAGACCCCAGAGCCAGCAGAGGCCAAGTGCACAGCTCCCCTGACTCCCAGCAGTAGTCCCGAGCAAag cttcacccatctggtatgtggtactctttaacctcgatcatctcccttagtGAGGAGGGGAGATTATCTACCACACAAGATGCTGCCTGCAGGGATGCAGAAGAGGCCCCTGAGCCTGCAGAGGCCAACTGCCCAGCTCCTCTGACTCCCAGTAGTAGTTCAGCACGAaggtgagtagatggtcagacttagacgcgcatgagaattttagttgtgtgtg Alignment from Spaln_aa2Genome TGAGGAAGAAAAACTGTCTACCTCTCAAGATGCTGCTTGCAAAGATGCAGAAGAGACCCCAGAGCCAGCAGAGGCCAAGTGCACAGCTCCCCTGACTCCCAGCAGTAGTCCCGAGCAAAG cttcacccatctggtatgtggtactctttaacctcgatcatctcccttagTGAGGAGGGGAGATTATCTACCACACAAGATGCTGCCTGCAGGGATGCAGAAGAGGCCCCTGAGCCTGCAGAGGCCAACTGCCCAGCTCCTCTGACTCCCAGTAGTAGTTCAGCACGAAGgtgagtagatggtcagacttagacgcgcatgagaattttagttgtgtgtg Alignment from Spaln_nt2Genome TGAGGAAGAAAAACTGTCTACCTCTCAAGATGCTGCTTGCAAAGATGCAGAAGAGACCCCAGAGCCAGCAGAGGCCAAGTGCACAGCTCCCCTGACTCCCAGCAGTAGTCCCGAGCAAAG cttcacccatctggtatgtggtactctttaacctcgatcatctcccttagTGAGGAGGGGAGATTATCTACCACACAAGATGCTGCCTGCAGGGATGCAGAAGAGGCCCCTGAGCCTGCAGAGGCCAACTGCCCAGCTCCTCTGACTCCCAGTAGTAGTTCAGCACGAAGgtgagtagatggtcagacttagacgcgcatgagaattttagttgtgtgtg Alignment from Pairagon TGAGGAAGAAAAACTGTCTACCTCTCAAGATGCTGCTTGCAAAGATGCAGAAGAGACCCCAGAGCCAGCAGAGGCCAAGTGCACAGCTCCCCTGACTCCCAGCAGTAGTCCCGAGCAAAG cttcacccatctggtatgtggtactctttaacctcgatcatctcccttagTGAGGAGGGGAGATTATCTACCACACAAGATGCTGCCTGCAGGGATGCAGAAGAGGCCCCTGAGCCTGCAGAGGCCAACTGCCCAGCTCCTCTGACTCCCAGTAGTAGTTCAGCACGAAGgtgagtagatggtcagacttagacgcgcatgagaattttagttgtgtgtg Alignment from Exonerate_protein2genome TGAGGAAGAAAAACTGTCTACCTCTCAAGATGCTGCTTGCAAAGATGCAGAAGAGACCCCAGAGCCAGCAGAGGCCAAGTGCACAGCTCCCCTGACTCCCAGCAGTAGTCCCGAGCAAAG cttcacccatctggtatgtggtactctttaacctcgatcatctcccttagTGAGGAGGGGAGATTATCTACCACACAAGATGCTGCCTGCAGGGATGCAGAAGAGGCCCCTGAGCCTGCAGAGGCCAACTGCCCAGCTCCTCTGACTCCCAGTAGTAGTTCAGCACGAAGgtgagtagatggtcagacttagacgcgcatgagaattttagttgtgtgtg Alignment from Exonerate_coding2genome TGAGGAAGAAAAACTGTCTACCTCTCAAGATGCTGCTTGCAAAGATGCAGAAGAGACCCCAGAGCCAGCAGAGGCCAAGTGCACAGCTCCCCTGACTCCCAGCAGTAGTCCCGAGCAAAG cttcacccatctggtatgtggtactctttaacctcgatcatctcccttagTGAGGAGGGGAGATTATCTACCACACAAGATGCTGCCTGCAGGGATGCAGAAGAGGCCCCTGAGCCTGCAGAGGCCAACTGCCCAGCTCCTCTGACTCCCAGTAGTAGTTCAGCACGAAGgtgagtagatggtcagacttagacgcgcatgagaattttagttgtgtgtg Alignment from GeneWise TGAGGAAGAAAAACTGTCTACCTCTCAAGATGCTGCTTGCAAAGATGCAGAAGAGACCCCAGAGCCAGCAGAGGCCAAGTGCACAGCTCCCCTGACTCCCAGCAGTAGTCCCGAGCAAAGG cttcacccatctggtatgtggtactctttaacctcgatcatctcccttagTGAGGAGGGGAGATTATCTACCACACAAGATGCTGCCTGCAGGGATGCAGAAGAGGCCCCTGAGCCTGCAGAGGCCAACTGCCCAGCTCCTCTGACTCCCAGTAGTAGTTCAGCACGAAGGtgagtagatggtcagacttagacgcgcatgagaattttagttgtgtgtg #### Ppp6r3_ID75_18 --> 2 - 2 Original Alignment caCCCACCTGGTCAGCCAACTTTGACGTCCCAATGGAAACCACCCATGGTGCTCCCTTAGACTCCGTGGGATCCGATGTCTGGAGCACAGAGGAGCCAATGCCAACTAAAGAGACAGGCTGGGCTTCCTTTTCAGAGTTCACATCCTCCCTGag taaatcagggaatgagagattgtgggcatctctcttatttaactccccagcaCCCACTTGGTCAGCCAATTTTGATGTCCCCATGGAGACTACTCATGGTGCTCCTTTGGACTCTGTGGGATCAGATGTCTGGAGCACAGAGGAGCCGATGTCAACTAAAGAAACAGGCTGGGCATCCTTTTCAGGGTTCACATCCTCCTTGaggtgagcagaggggagtgactggcagtatctgcataaggcatagtttgagg Alignment from CESAR caCCCACCTGGTCAGCCAACTTTGACGTCCCAATGGAAACCACCCATGGTGCTCCCTTAGACTCCGTGGGATCCGATGTCTGGAGCACAGAGGAGCCAATGCCAACTAAAGAGACAGGCTGGGCTTCCTTTTCAGAGTTCACATCCTCCCTGag taaatcagggaatgagagattgtgggcatctctcttatttaactccccagcaCCCACTTGGTCAGCCAATTTTGATGTCCCCATGGAGACTACTCATGGTGCTCCTTTGGACTCTGTGGGATCAGATGTCTGGAGCACAGAGGAGCCGATGTCAACTAAAGAAACAGGCTGGGCATCCTTTTCAGGGTTCACATCCTCCTTGaggtgagcagaggggagtgactggcagtatctgcataaggcatagtttgagg Alignment from Spaln_aa2Genome CACCCACCTGGTCAGCCAACTTTGACGTCCCAATGGAAACCACCCATGGTGCTCCCTTAGACTCCGTGGGATCCGATGTCTGGAGCACAGAGGAGCCAATGCCAACTAAAGAGACAGGCTGGGCTTCCTTTTCAGAGTTCACATCCTCCCTGAG taaatcagggaatgagagattgtgggcatctctcttatttaactccccagCACCCACTTGGTCAGCCAATTTTGATGTCCCCATGGAGACTACTCATGGTGCTCCTTTGGACTCTGTGGGATCAGATGTCTGGAGCACAGAGGAGCCGATGTCAACTAAAGAAACAGGCTGGGCATCCTTTTCAGGGTTCACATCCTCCTTGAGgtgagcagaggggagtgactggcagtatctgcataaggcatagtttgagg Alignment from Spaln_nt2Genome CACCCACCTGGTCAGCCAACTTTGACGTCCCAATGGAAACCACCCATGGTGCTCCCTTAGACTCCGTGGGATCCGATGTCTGGAGCACAGAGGAGCCAATGCCAACTAAAGAGACAGGCTGGGCTTCCTTTTCAGAGTTCACATCCTCCCTGAG taaatcagggaatgagagattgtgggcatctctcttatttaactccccagCACCCACTTGGTCAGCCAATTTTGATGTCCCCATGGAGACTACTCATGGTGCTCCTTTGGACTCTGTGGGATCAGATGTCTGGAGCACAGAGGAGCCGATGTCAACTAAAGAAACAGGCTGGGCATCCTTTTCAGGGTTCACATCCTCCTTGAGgtgagcagaggggagtgactggcagtatctgcataaggcatagtttgagg Alignment from Pairagon CACCCACCTGGTCAGCCAACTTTGACGTCCCAATGGAAACCACCCATGGTGCTCCCTTAGACTCCGTGGGATCCGATGTCTGGAGCACAGAGGAGCCAATGCCAACTAAAGAGACAGGCTGGGCTTCCTTTTCAGAGTTCACATCCTCCCTGAG taaatcagggaatgagagattgtgggcatctctcttatttaactccccagCACCCACTTGGTCAGCCAATTTTGATGTCCCCATGGAGACTACTCATGGTGCTCCTTTGGACTCTGTGGGATCAGATGTCTGGAGCACAGAGGAGCCGATGTCAACTAAAGAAACAGGCTGGGCATCCTTTTCAGGGTTCACATCCTCCTTGAGgtgagcagaggggagtgactggcagtatctgcataaggcatagtttgagg Alignment from Exonerate_protein2genome CACCCACCTGGTCAGCCAACTTTGACGTCCCAATGGAAACCACCCATGGTGCTCCCTTAGACTCCGTGGGATCCGATGTCTGGAGCACAGAGGAGCCAATGCCAACTAAAGAGACAGGCTGGGCTTCCTTTTCAGAGTTCACATCCTCCCTGAG taaatcagggaatgagagattgtgggcatctctcttatttaactccccagCACCCACTTGGTCAGCCAATTTTGATGTCCCCATGGAGACTACTCATGGTGCTCCTTTGGACTCTGTGGGATCAGATGTCTGGAGCACAGAGGAGCCGATGTCAACTAAAGAAACAGGCTGGGCATCCTTTTCAGGGTTCACATCCTCCTTGAGgtgagcagaggggagtgactggcagtatctgcataaggcatagtttgagg Alignment from Exonerate_coding2genome CACCCACCTGGTCAGCCAACTTTGACGTCCCAATGGAAACCACCCATGGTGCTCCCTTAGACTCCGTGGGATCCGATGTCTGGAGCACAGAGGAGCCAATGCCAACTAAAGAGACAGGCTGGGCTTCCTTTTCAGAGTTCACATCCTCCCTGAG taaatcagggaatgagagattgtgggcatctctcttatttaactccccagCACCCACTTGGTCAGCCAATTTTGATGTCCCCATGGAGACTACTCATGGTGCTCCTTTGGACTCTGTGGGATCAGATGTCTGGAGCACAGAGGAGCCGATGTCAACTAAAGAAACAGGCTGGGCATCCTTTTCAGGGTTCACATCCTCCTTGAGgtgagcagaggggagtgactggcagtatctgcataaggcatagtttgagg Alignment from GeneWise CACCCACCTGGTCAGCCAACTTTGACGTCCCAATGGAAACCACCCATGGTGCTCCCTTAGACTCCGTGGGATCCGATGTCTGGAGCACAGAGGAGCCAATGCCAACTAAAGAGACAGGCTGGGCTTCCTTTTCAGAGTTCACATCCTCCCTGAG taaatcagggaatgagagattgtgggcatctctcttatttaactccccagCACCCACTTGGTCAGCCAATTTTGATGTCCCCATGGAGACTACTCATGGTGCTCCTTTGGACTCTGTGGGATCAGATGTCTGGAGCACAGAGGAGCCGATGTCAACTAAAGAAACAGGCTGGGCATCCTTTTCAGGGTTCACATCCTCCTTGAGgtgagcagaggggagtgactggcagtatctgcataaggcatagtttgagg #### Ppp6r3_ID79_14 --> 0 - 2 Original Alignment GCCTTTTCTGATTATCAGATGCAACAAATGACG---TCCAATTTTATTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCaa acagagtctgatataactaacttcatttttggtctcactgtttgtttcagGGGTTTTCTGATTACCAGATGCAGCAAAAGACTTCACCCAATTTTACTGACCAATATGGCTTCAATGATGAAAAGTTTGCAGATCAAGATGACAATGGCaagtaagtaagtttatctccatccacatgtgttatctctatggtgctcttga Alignment from CESAR GCCTTTTCTGATTATCAGATGCAACAAATGACGTCC---AATTTTATTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCaa acagagtctgatataactaacttcatttttggtctcactgtttgtttcagGGGTTTTCTGATTACCAGATGCAGCAAAAGACTTCACCCAATTTTACTGACCAATATGGCTTCAATGATGAAAAGTTTGCAGATCAAGATGACAATGGCaagtaagtaagtttatctccatccacatgtgttatctctatggtgctcttga Alignment from Spaln_aa2Genome GCCTTTTCTGATTATCAGATGCAACAAATGACGTCC---AATTTTATTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCAA acagagtctgatataactaacttcatttttggtctcactgtttgtttcagGGGTTTTCTGATTACCAGATGCAGCAAAAGACTTCACCCAATTTTACTGACCAATATGGCTTCAATGATGAAAAGTTTGCAGATCAAGATGACAATGGCAAgtaagtaagtttatctccatccacatgtgttatctctatggtgctcttga Alignment from Spaln_nt2Genome GCCTTTTCTGATTATCAGATGCAACAAATGACGTC---CAATTTTATTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCAA acagagtctgatataactaacttcatttttggtctcactgtttgtttcagGGGTTTTCTGATTACCAGATGCAGCAAAAGACTTCACCCAATTTTACTGACCAATATGGCTTCAATGATGAAAAGTTTGCAGATCAAGATGACAATGGCAAgtaagtaagtttatctccatccacatgtgttatctctatggtgctcttga Alignment from Pairagon GCCTTTTCTGATTATCAGATGCAACAAATGACGT---CCAATTTTATTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCAA acagagtctgatataactaacttcatttttggtctcactgtttgtttcagGGGTTTTCTGATTACCAGATGCAGCAAAAGACTTCACCCAATTTTACTGACCAATATGGCTTCAATGATGAAAAGTTTGCAGATCAAGATGACAATGGCAAgtaagtaagtttatctccatccacatgtgttatctctatggtgctcttga Alignment from Exonerate_protein2genome GCCTTTTCTGATTATCAGATGCAACAAATGACGTCC---AATTTTATTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCAA acagagtctgatataactaacttcatttttggtctcactgtttgtttcagGGGTTTTCTGATTACCAGATGCAGCAAAAGACTTCACCCAATTTTACTGACCAATATGGCTTCAATGATGAAAAGTTTGCAGATCAAGATGACAATGGCAAgtaagtaagtttatctccatccacatgtgttatctctatggtgctcttga Alignment from Exonerate_coding2genome GCCTTTTCTGATTATCAGATGCAACAAATGACGTCC---AATTTTATTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCAA acagagtctgatataactaacttcatttttggtctcactgtttgtttcagGGGTTTTCTGATTACCAGATGCAGCAAAAGACTTCACCCAATTTTACTGACCAATATGGCTTCAATGATGAAAAGTTTGCAGATCAAGATGACAATGGCAAgtaagtaagtttatctccatccacatgtgttatctctatggtgctcttga Alignment from GeneWise GCCTTTTCTGATTATCAGATGCAACAAATGACGTCC---AATTTTATTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCAA acagagtctgatataactaacttcatttttggtctcactgtttgtttcagGGGTTTTCTGATTACCAGATGCAGCAAAAGACTTCACCCAATTTTACTGACCAATATGGCTTCAATGATGAAAAGTTTGCAGATCAAGATGACAATGGCAAgtaagtaagtttatctccatccacatgtgttatctctatggtgctcttga #### Ppp6r3_ID84_10 --> 0 - 2 Original Alignment CTTTTTCAAAAGTGTCAGTTAATAGAGCGAATACTTGAAGCCTGGGACACAAATGAGAAGAAAca gtgggttcactctctcgccttcatcactactatgcagagtgtgtttccagCTATTCCAAAAGTGCCAGTTAATAGAAAGGATACTTGAGGCATGGGACACAAATGAGAAAAGAcagtactaatagcctagcaaaggactgcagtaagaactttacggtacactgc Alignment from CESAR CTTTTTCAAAAGTGTCAGTTAATAGAGCGAATACTTGAAGCCTGGGACACAAATGAGAAGAAAca gtgggttcactctctcgccttcatcactactatgcagagtgtgtttccagCTATTCCAAAAGTGCCAGTTAATAGAAAGGATACTTGAGGCATGGGACACAAATGAGAAAAGAcagtactaatagcctagcaaaggactgcagtaagaactttacggtacactgc Alignment from Spaln_aa2Genome CTTTTTCAAAAGTGTCAGTTAATAGAGCGAATACTTGAAGCCTGGGACACAAATGAGAAGAAACA gtgggttcactctctcgccttcatcactactatgcagagtgtgtttccagCTATTCCAAAAGTGCCAGTTAATAGAAAGGATACTTGAGGCATGGGACACAAATGAGAAAAGACAgtactaatagcctagcaaaggactgcagtaagaactttacggtacactgc Alignment from Spaln_nt2Genome CTTTTTCAAAAGTGTCAGTTAATAGAGCGAATACTTGAAGCCTGGGACACAAATGAGAAGAAACA gtgggttcactctctcgccttcatcactactatgcagagtgtgtttccagCTATTCCAAAAGTGCCAGTTAATAGAAAGGATACTTGAGGCATGGGACACAAATGAGAAAAGACAgtactaatagcctagcaaaggactgcagtaagaactttacggtacactgc Alignment from Pairagon CTTTTTCAAAAGTGTCAGTTAATAGAGCGAATACTTGAAGCCTGGGACACAAATGAGAAGAAACA gtgggttcactctctcgccttcatcactactatgcagagtgtgtttccagCTATTCCAAAAGTGCCAGTTAATAGAAAGGATACTTGAGGCATGGGACACAAATGAGAAAAGACAgtactaatagcctagcaaaggactgcagtaagaactttacggtacactgc Alignment from Exonerate_protein2genome CTTTTTCAAAAGTGTCAGTTAATAGAGCGAATACTTGAAGCCTGGGACACAAATGAGAAGAAACA gtgggttcactctctcgccttcatcactactatgcagagtgtgtttccagCTATTCCAAAAGTGCCAGTTAATAGAAAGGATACTTGAGGCATGGGACACAAATGAGAAAAGACAgtactaatagcctagcaaaggactgcagtaagaactttacggtacactgc Alignment from Exonerate_coding2genome CTTTTTCAAAAGTGTCAGTTAATAGAGCGAATACTTGAAGCCTGGGACACAAATGAGAAGAAACA gtgggttcactctctcgccttcatcactactatgcagagtgtgtttccagCTATTCCAAAAGTGCCAGTTAATAGAAAGGATACTTGAGGCATGGGACACAAATGAGAAAAGACAgtactaatagcctagcaaaggactgcagtaagaactttacggtacactgc Alignment from GeneWise CTTTTTCAAAAGTGTCAGTTAATAGAGCGAATACTTGAAGCCTGGGACACAAATGAGAAGAAACA gtgggttcactctctcgccttcatcactactatgcagagtgtgtttccagCTATTCCAAAAGTGCCAGTTAATAGAAAGGATACTTGAGGCATGGGACACAAATGAGAAAAGACAgtactaatagcctagcaaaggactgcagtaagaactttacggtacactgc #### Ppp6r3_ID85_9 --> 0 - 0 Original Alignment GATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACGCAAGTGGAAATTTGCATTGCTCTCATTCTGGCCAGTCCTTTTGAGAATGCAGAG---AATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAGCAT caaaaagacaactctggtatgttactcaaatttttaaacttaatgtccagGACATGTTCTTCAATTACACATGGAATAACTTTTTACACACACAAGTGGAAATTTGCATTGCTCTTATCCTCGCCAGCCCTTTTGAGAATGCAGAGAAGAATGGCACCATTACAGATCAAGACTCTACTGGTGACAACCTGTTATTAAAACATgtaagccctattctccattattctgtccttcaaacttgcagttaattata Alignment from CESAR GATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACGCAAGTGGAAATTTGCATTGCTCTCATTCTGGCCAGTCCTTTTGAGAATGCAGAG---AATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAGCAT caaaaagacaactctggtatgttactcaaatttttaaacttaatgtccagGACATGTTCTTCAATTACACATGGAATAACTTTTTACACACACAAGTGGAAATTTGCATTGCTCTTATCCTCGCCAGCCCTTTTGAGAATGCAGAGAAGAATGGCACCATTACAGATCAAGACTCTACTGGTGACAACCTGTTATTAAAACATgtaagccctattctccattattctgtccttcaaacttgcagttaattata Alignment from Spaln_aa2Genome GATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACGCAAGTGGAAATTTGCATTGCTCTCATTCTGGCCAGTCCTTTTGAGAATGCAGAG---AATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAGCAT caaaaagacaactctggtatgttactcaaatttttaaacttaatgtccagGACATGTTCTTCAATTACACATGGAATAACTTTTTACACACACAAGTGGAAATTTGCATTGCTCTTATCCTCGCCAGCCCTTTTGAGAATGCAGAGAAGAATGGCACCATTACAGATCAAGACTCTACTGGTGACAACCTGTTATTAAAACATgtaagccctattctccattattctgtccttcaaacttgcagttaattata Alignment from Spaln_nt2Genome GATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACGCAAGTGGAAATTTGCATTGCTCTCATTCTGGCCAGTCCTTTTGAGAATGCAGA---GAATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAGCAT caaaaagacaactctggtatgttactcaaatttttaaacttaatgtccagGACATGTTCTTCAATTACACATGGAATAACTTTTTACACACACAAGTGGAAATTTGCATTGCTCTTATCCTCGCCAGCCCTTTTGAGAATGCAGAGAAGAATGGCACCATTACAGATCAAGACTCTACTGGTGACAACCTGTTATTAAAACATgtaagccctattctccattattctgtccttcaaacttgcagttaattata Alignment from Pairagon GATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACGCAAGTGGAAATTTGCATTGCTCTCATTCTGGCCAGTCCTTTTGAGAATGCAG---AGAATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAGCAT caaaaagacaactctggtatgttactcaaatttttaaacttaatgtccagGACATGTTCTTCAATTACACATGGAATAACTTTTTACACACACAAGTGGAAATTTGCATTGCTCTTATCCTCGCCAGCCCTTTTGAGAATGCAGAGAAGAATGGCACCATTACAGATCAAGACTCTACTGGTGACAACCTGTTATTAAAACATgtaagccctattctccattattctgtccttcaaacttgcagttaattata Alignment from Exonerate_protein2genome GATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACGCAAGTGGAAATTTGCATTGCTCTCATTCTGGCCAGTCCTTTTGAGAATGCAGAG---AATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAGCAT caaaaagacaactctggtatgttactcaaatttttaaacttaatgtccagGACATGTTCTTCAATTACACATGGAATAACTTTTTACACACACAAGTGGAAATTTGCATTGCTCTTATCCTCGCCAGCCCTTTTGAGAATGCAGAGAAGAATGGCACCATTACAGATCAAGACTCTACTGGTGACAACCTGTTATTAAAACATgtaagccctattctccattattctgtccttcaaacttgcagttaattata Alignment from Exonerate_coding2genome GATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACGCAAGTGGAAATTTGCATTGCTCTCATTCTGGCCAGTCCTTTTGAGAATGCAGAG---AATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAGCAT caaaaagacaactctggtatgttactcaaatttttaaacttaatgtccagGACATGTTCTTCAATTACACATGGAATAACTTTTTACACACACAAGTGGAAATTTGCATTGCTCTTATCCTCGCCAGCCCTTTTGAGAATGCAGAGAAGAATGGCACCATTACAGATCAAGACTCTACTGGTGACAACCTGTTATTAAAACATgtaagccctattctccattattctgtccttcaaacttgcagttaattata Alignment from GeneWise GATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACGCAAGTGGAAATTTGCATTGCTCTCATTCTGGCCAGTCCTTTTGAGAATGCAGAG---AATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAGCAT caaaaagacaactctggtatgttactcaaatttttaaacttaatgtccagGACATGTTCTTCAATTACACATGGAATAACTTTTTACACACACAAGTGGAAATTTGCATTGCTCTTATCCTCGCCAGCCCTTTTGAGAATGCAGAGAAGAATGGCACCATTACAGATCAAGACTCTACTGGTGACAACCTGTTATTAAAACATgtaagccctattctccattattctgtccttcaaacttgcagttaattata #### Prdx3_ID13362_5 --> 0 - 2 Original Alignment AATGGTGGTTTGGGCCACATGAACATCACACTGTTGTCGGATATAACTAAGCAGATATCCCGAGACTACGGAGTGCTGTTGGAAAGTGCTGGCATTGCACTCag ggcctagggccatttcatgaagaacaagaatatttttttttaatcatcagAATGGTGGTTTGGGCCACATGAACATCACTCTGGTGTCAGATATAACTAAGCAGATATCCAGAGATTACGGTGTGCTATTGGAAAGTGCTGGCATAGCACTCaggtgagcgttgtcagtcgctagctggagtgactttatatattgttatttat Alignment from CESAR AATGGTGGTTTGGGCCACATGAACATCACACTGTTGTCGGATATAACTAAGCAGATATCCCGAGACTACGGAGTGCTGTTGGAAAGTGCTGGCATTGCACTCag ggcctagggccatttcatgaagaacaagaatatttttttttaatcatcagAATGGTGGTTTGGGCCACATGAACATCACTCTGGTGTCAGATATAACTAAGCAGATATCCAGAGATTACGGTGTGCTATTGGAAAGTGCTGGCATAGCACTCaggtgagcgttgtcagtcgctagctggagtgactttatatattgttatttat Alignment from Spaln_aa2Genome AATGGTGGTTTGGGCCACATGAACATCACACTGTTGTCGGATATAACTAAGCAGATATCCCGAGACTACGGAGTGCTGTTGGAAAGTGCTGGCATTGCACTCAG ggcctagggccatttcatgaagaacaagaatatttttttttaatcatcagAATGGTGGTTTGGGCCACATGAACATCACTCTGGTGTCAGATATAACTAAGCAGATATCCAGAGATTACGGTGTGCTATTGGAAAGTGCTGGCATAGCACTCAGgtgagcgttgtcagtcgctagctggagtgactttatatattgttatttat Alignment from Spaln_nt2Genome AATGGTGGTTTGGGCCACATGAACATCACACTGTTGTCGGATATAACTAAGCAGATATCCCGAGACTACGGAGTGCTGTTGGAAAGTGCTGGCATTGCACTCAG ggcctagggccatttcatgaagaacaagaatatttttttttaatcatcagAATGGTGGTTTGGGCCACATGAACATCACTCTGGTGTCAGATATAACTAAGCAGATATCCAGAGATTACGGTGTGCTATTGGAAAGTGCTGGCATAGCACTCAGgtgagcgttgtcagtcgctagctggagtgactttatatattgttatttat Alignment from Pairagon AATGGTGGTTTGGGCCACATGAACATCACACTGTTGTCGGATATAACTAAGCAGATATCCCGAGACTACGGAGTGCTGTTGGAAAGTGCTGGCATTGCACTCAG ggcctagggccatttcatgaagaacaagaatatttttttttaatcatcagAATGGTGGTTTGGGCCACATGAACATCACTCTGGTGTCAGATATAACTAAGCAGATATCCAGAGATTACGGTGTGCTATTGGAAAGTGCTGGCATAGCACTCAGgtgagcgttgtcagtcgctagctggagtgactttatatattgttatttat Alignment from Exonerate_protein2genome AATGGTGGTTTGGGCCACATGAACATCACACTGTTGTCGGATATAACTAAGCAGATATCCCGAGACTACGGAGTGCTGTTGGAAAGTGCTGGCATTGCACTCAG ggcctagggccatttcatgaagaacaagaatatttttttttaatcatcagAATGGTGGTTTGGGCCACATGAACATCACTCTGGTGTCAGATATAACTAAGCAGATATCCAGAGATTACGGTGTGCTATTGGAAAGTGCTGGCATAGCACTCAGgtgagcgttgtcagtcgctagctggagtgactttatatattgttatttat Alignment from Exonerate_coding2genome AATGGTGGTTTGGGCCACATGAACATCACACTGTTGTCGGATATAACTAAGCAGATATCCCGAGACTACGGAGTGCTGTTGGAAAGTGCTGGCATTGCACTCAG ggcctagggccatttcatgaagaacaagaatatttttttttaatcatcagAATGGTGGTTTGGGCCACATGAACATCACTCTGGTGTCAGATATAACTAAGCAGATATCCAGAGATTACGGTGTGCTATTGGAAAGTGCTGGCATAGCACTCAGgtgagcgttgtcagtcgctagctggagtgactttatatattgttatttat Alignment from GeneWise AATGGTGGTTTGGGCCACATGAACATCACACTGTTGTCGGATATAACTAAGCAGATATCCCGAGACTACGGAGTGCTGTTGGAAAGTGCTGGCATTGCACTCAG ggcctagggccatttcatgaagaacaagaatatttttttttaatcatcagAATGGTGGTTTGGGCCACATGAACATCACTCTGGTGTCAGATATAACTAAGCAGATATCCAGAGATTACGGTGTGCTATTGGAAAGTGCTGGCATAGCACTCAGgtgagcgttgtcagtcgctagctggagtgactttatatattgttatttat #### Prdx3_ID13365_2 --> 0 - 1 Original Alignment GTTGCTCGTCATGCAAGTGCTATTTCCCGGAGTATTTCTGCCTCAACAGTTCTTAGGCCTGTTGCTTCTAGAAGAACCTGTTTGACAGACATACTGTGGTCTGCCTCTGCCCAAGGAAAGTCAGCCTTTAGCACCa gtcctccattggcaaaccatcccttactgtggctctcctttttttgtcagGTTGCGCGTCATGCAAGTGCCATATCCCGGGGTATTTCTGCCTCAACAGCCCTTAGGCCTGTTTCCTCTAGAAGATCATGTTTGACAGACATTCTGTGGCCTGCTGCTGCTCAGGGAAAGTCAGCCTTCAGCCCTagtgacaatatctggccacacaattcagtcctctacacatgcgaaattgtt Alignment from CESAR GTTGCTCGTCATGCAAGTGCTATTTCCCGGAGTATTTCTGCCTCAACAGTTCTTAGGCCTGTTGCTTCTAGAAGAACCTGTTTGACAGACATACTGTGGTCTGCCTCTGCCCAAGGAAAGTCAGCCTTTAGCACCa gtcctccattggcaaaccatcccttactgtggctctcctttttttgtcagGTTGCGCGTCATGCAAGTGCCATATCCCGGGGTATTTCTGCCTCAACAGCCCTTAGGCCTGTTTCCTCTAGAAGATCATGTTTGACAGACATTCTGTGGCCTGCTGCTGCTCAGGGAAAGTCAGCCTTCAGCCCTagtgacaatatctggccacacaattcagtcctctacacatgcgaaattgtt Alignment from Spaln_aa2Genome GTTGCTCGTCATGCAAGTGCTATTTCCCGGAGTATTTCTGCCTCAACAGTTCTTAGGCCTGTTGCTTCTAGAAGAACCTGTTTGACAGACATACTGTGGTCTGCCTCTGCCCAAGGAAAGTCAGCCTTTAGCACCA gtcctccattggcaaaccatcccttactgtggctctcctttttttgtcagGTTGCGCGTCATGCAAGTGCCATATCCCGGGGTATTTCTGCCTCAACAGCCCTTAGGCCTGTTTCCTCTAGAAGATCATGTTTGACAGACATTCTGTGGCCTGCTGCTGCTCAGGGAAAGTCAGCCTTCAGCCCTAgtgacaatatctggccacacaattcagtcctctacacatgcgaaattgtt Alignment from Spaln_nt2Genome GTTGCTCGTCATGCAAGTGCTATTTCCCGGAGTATTTCTGCCTCAACAGTTCTTAGGCCTGTTGCTTCTAGAAGAACCTGTTTGACAGACATACTGTGGTCTGCCTCTGCCCAAGGAAAGTCAGCCTTTAGCACCA gtcctccattggcaaaccatcccttactgtggctctcctttttttgtcagGTTGCGCGTCATGCAAGTGCCATATCCCGGGGTATTTCTGCCTCAACAGCCCTTAGGCCTGTTTCCTCTAGAAGATCATGTTTGACAGACATTCTGTGGCCTGCTGCTGCTCAGGGAAAGTCAGCCTTCAGCCCTAgtgacaatatctggccacacaattcagtcctctacacatgcgaaattgtt Alignment from Pairagon GTTGCTCGTCATGCAAGTGCTATTTCCCGGAGTATTTCTGCCTCAACAGTTCTTAGGCCTGTTGCTTCTAGAAGAACCTGTTTGACAGACATACTGTGGTCTGCCTCTGCCCAAGGAAAGTCAGCCTTTAGCACCA gtcctccattggcaaaccatcccttactgtggctctcctttttttgtcagGTTGCGCGTCATGCAAGTGCCATATCCCGGGGTATTTCTGCCTCAACAGCCCTTAGGCCTGTTTCCTCTAGAAGATCATGTTTGACAGACATTCTGTGGCCTGCTGCTGCTCAGGGAAAGTCAGCCTTCAGCCCTAgtgacaatatctggccacacaattcagtcctctacacatgcgaaattgtt Alignment from Exonerate_protein2genome GTTGCTCGTCATGCAAGTGCTATTTCCCGGAGTATTTCTGCCTCAACAGTTCTTAGGCCTGTTGCTTCTAGAAGAACCTGTTTGACAGACATACTGTGGTCTGCCTCTGCCCAAGGAAAGTCAGCCTTTAGCACCA gtcctccattggcaaaccatcccttactgtggctctcctttttttgtcagGTTGCGCGTCATGCAAGTGCCATATCCCGGGGTATTTCTGCCTCAACAGCCCTTAGGCCTGTTTCCTCTAGAAGATCATGTTTGACAGACATTCTGTGGCCTGCTGCTGCTCAGGGAAAGTCAGCCTTCAGCCCTAgtgacaatatctggccacacaattcagtcctctacacatgcgaaattgtt Alignment from Exonerate_coding2genome CTCTGGTCCTCGGTTGCTCGTCATGCAAGTGCTATTTCCCGGAGTATTTCTGCCTCAACAGTTCTTAGGCCTGTTGCTTCTAGAAGAACCTGTTTGACAGACATACTGTGGTCTGCCTCTGCCCAAGGAAAGTCAGCCTTTAGCACCA gtcctccattggcaaaccatcccttactgtggctctccTTTTTTTGTCAGGTTGCGCGTCATGCAAGTGCCATATCCCGGGGTATTTCTGCCTCAACAGCCCTTAGGCCTGTTTCCTCTAGAAGATCATGTTTGACAGACATTCTGTGGCCTGCTGCTGCTCAGGGAAAGTCAGCCTTCAGCCCTAgtgacaatatctggccacacaattcagtcctctacacatgcgaaattgtt Alignment from GeneWise GCGGCAGCTGCGGGAAGGTTGCTCTGGTCCTCG------------GTTGCTCGTCATGCAAGTGCTATTTCCCGGAGTATTTCTGCCTCAACAGTTCTTAGGCCTGTTGCTTCTAGAAGAACCTGTTTGACAGACATACTGTGGTCTGCCTCTGCCCAAGGAAAGTCAGCCTTTAGCACCA gtcctCCATTGGCAAACCATCCCTTACTGTGGCTCTCCTTTTTTTGTCAGGTTGCGCGTCATGCAAGTGCCATATCCCGGGGTATTTCTGCCTCAACAGCCCTTAGGCCTGTTTCCTCTAGAAGATCATGTTTGACAGACATTCTGTGGCCTGCTGCTGCTCAGGGAAAGTCAGCCTTCAGCCCTAgtgacaatatctggccacacaattcagtcctctacacatgcgaaattgtt #### Prdx5_ID1852_5 --> 0 - 2 Original Alignment GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAag ctacaaataatagggccatccttgcaccataaatatattttctgatttagGTGACTGACCTCTTATTAGATGATTCACTGCTTTCTCTATGTGGGAACCATTGGCTGAAAaggtaagggagacctccagtctctcccccatacttactgactgcaggatagc Alignment from CESAR GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAag ctacaaataatagggccatccttgcaccataaatatattttctgatttagGTGACTGACCTCTTATTAGATGATTCACTGCTTTCTCTATGTGGGAACCATTGGCTGAAAaggtaagggagacctccagtctctcccccatacttactgactgcaggatagc Alignment from Spaln_aa2Genome GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG ctacaaataatagggccatccttgcaccataaatatattttctgatttagGTGACTGACCTCTTATTAGATGATTCACTGCTTTCTCTATGTGGGAACCATTGGCTGAAAAGgtaagggagacctccagtctctcccccatacttactgactgcaggatagc Alignment from Spaln_nt2Genome GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG ctacaaataatagggccatccttgcaccataaatatattttctgatttagGTGACTGACCTCTTATTAGATGATTCACTGCTTTCTCTATGTGGGAACCATTGGCTGAAAAGgtaagggagacctccagtctctcccccatacttactgactgcaggatagc Alignment from Pairagon GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG ctacaaataatagggccatccttgcaccataaatatattttctgatttagGTGACTGACCTCTTATTAGATGATTCACTGCTTTCTCTATGTGGGAACCATTGGCTGAAAAGgtaagggagacctccagtctctcccccatacttactgactgcaggatagc Alignment from Exonerate_protein2genome GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG ctacaaataatagggccatccttgcaccataaatatattttctgatttagGTGACTGACCTCTTATTAGATGATTCACTGCTTTCTCTATGTGGGAACCATTGGCTGAAAAGgtaagggagacctccagtctctcccccatacttactgactgcaggatagc Alignment from Exonerate_coding2genome GCGACAGACTTATTATT ctacaaataatagggccatccttgcaccataaatatattttctgatttaggtgactgacctcttattagatgattcactgctttctctatgtgggaaccattggctgaaaaggtaagggagacctccagtctctcccccatacttACTGACTGCAGGATAGC Alignment from GeneWise GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG ctacaaataatagggccatccttgcaccataaatatattttctgatttagGTGACTGACCTCTTATTAGATGATTCACTGCTTTCTCTATGTGGGAACCATTGGCTGAAAAGgtaagggagacctccagtctctcccccatacttactgactgcaggatagc #### Prdx5_ID1853_4 --> 0 - 0 Original Alignment GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG agtgctgtccctgagagttaatacaaagacacaccgcttgctactgacagGTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAGgtaatggtttgtagttgaatattgtctgccgttttagcctggcctcagaa Alignment from CESAR GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG agtgctgtccctgagagttaatacaaagacacaccgcttgctactgacagGTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAGgtaatggtttgtagttgaatattgtctgccgttttagcctggcctcagaa Alignment from Spaln_aa2Genome GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG agtgctgtccctgagagttaatacaaagacacaccgcttgctactgacagGTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAGgtaatggtttgtagttgaatattgtctgccgttttagcctggcctcagaa Alignment from Spaln_nt2Genome GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG agtgctgtccctgagagttaatacaaagacacaccgcttgctactgacagGTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAGgtaatggtttgtagttgaatattgtctgccgttttagcctggcctcagaa Alignment from Pairagon GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG agtgctgtccctgagagttaatacaaagacacaccgcttgctactgacagGTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAGgtaatggtttgtagttgaatattgtctgccgttttagcctggcctcagaa Alignment from Exonerate_protein2genome GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG agtgctgtccctgagagttaatacaaagacacaccgcttgctactgacagGTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAGgtaatggtttgtagttgaatattgtctgccgttttagcctggcctcagaa Alignment from Exonerate_coding2genome GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG agtgctgtccctgagagttaatacaaagacacaccgcttgctactgacagGTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAGgtaatggtttgtagttgaatattgtctgccgttttagcctggcctcagaa Alignment from GeneWise GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAG agtgctgtccctgagagttaatacaaagacacaccgcttgctactgacagGTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAGgtaatggtttgtagttgaatattgtctgccgttttagcctggcctcagaa #### Prkg1_ID6491_15 --> 1 - 2 Original Alignment cCCACCTTTCTCAGGCCCAGATCCAATGAAAACCTACAATATCATACTGCGGGGGATTGACATGATAGAATTTCCAAAGAAGATTGCAAAAAATGCTGCTAATTTAATTAAAAAACTATGCag gtgttaggacctcttaaccttgcttacaccatcttctttcaaacttacagcCCACCTTTCTCAGGCCCAGATCCAATGAAAACCTACAACATCATACTGTGCGGTATTGATATGATAGAATTCCCAAAGAGAGTGGCAAAAAATGCTGCTAACTTGATTAAAAAACTATGCaggtgatgttcaaaagcgtagcttttatagcaggatcattctgcaaggacac Alignment from CESAR cCCACCTTTCTCAGGCCCAGATCCAATGAAAACCTACAATATCATACTGCGGGGGATTGACATGATAGAATTTCCAAAGAAGATTGCAAAAAATGCTGCTAATTTAATTAAAAAACTATGCag gtgttaggacctcttaaccttgcttacaccatcttctttcaaacttacagcCCACCTTTCTCAGGCCCAGATCCAATGAAAACCTACAACATCATACTGTGCGGTATTGATATGATAGAATTCCCAAAGAGAGTGGCAAAAAATGCTGCTAACTTGATTAAAAAACTATGCaggtgatgttcaaaagcgtagcttttatagcaggatcattctgcaaggacac Alignment from Spaln_aa2Genome CCCACCTTTCTCAGGCCCAGATCCAATGAAAACCTACAATATCATACTGCGGGGGATTGACATGATAGAATTTCCAAAGAAGATTGCAAAAAATGCTGCTAATTTAATTAAAAAACTATGCAG gtgttaggacctcttaaccttgcttacaccatcttctttcaaacttacagCCCACCTTTCTCAGGCCCAGATCCAATGAAAACCTACAACATCATACTGTGCGGTATTGATATGATAGAATTCCCAAAGAGAGTGGCAAAAAATGCTGCTAACTTGATTAAAAAACTATGCAGgtgatgttcaaaagcgtagcttttatagcaggatcattctgcaaggacac Alignment from Spaln_nt2Genome CCCACCTTTCTCAGGCCCAGATCCAATGAAAACCTACAATATCATACTGCGGGGGATTGACATGATAGAATTTCCAAAGAAGATTGCAAAAAATGCTGCTAATTTAATTAAAAAACTATGCAG gtgttaggacctcttaaccttgcttacaccatcttctttcaaacttacagCCCACCTTTCTCAGGCCCAGATCCAATGAAAACCTACAACATCATACTGTGCGGTATTGATATGATAGAATTCCCAAAGAGAGTGGCAAAAAATGCTGCTAACTTGATTAAAAAACTATGCAGgtgatgttcaaaagcgtagcttttatagcaggatcattctgcaaggacac Alignment from Pairagon CCCACCTTTCTCAGGCCCAGATCCAATGAAAACCTACAATATCATACTGCGGGGGATTGACATGATAGAATTTCCAAAGAAGATTGCAAAAAATGCTGCTAATTTAATTAAAAAACTATGCAG gtgttaggacctcttaaccttgcttacaccatcttctttcaaacttacagCCCACCTTTCTCAGGCCCAGATCCAATGAAAACCTACAACATCATACTGTGCGGTATTGATATGATAGAATTCCCAAAGAGAGTGGCAAAAAATGCTGCTAACTTGATTAAAAAACTATGCAGgtgatgttcaaaagcgtagcttttatagcaggatcattctgcaaggacac Alignment from Exonerate_protein2genome CCCACCTTTCTCAGGCCCAGATCCAATGAAAACCTACAATATCATACTGCGGGGGATTGACATGATAGAATTTCCAAAGAAGATTGCAAAAAATGCTGCTAATTTAATTAAAAAACTATGCAG gtgttaggacctcttaaccttgcttacaccatcttctttcaaacttacagCCCACCTTTCTCAGGCCCAGATCCAATGAAAACCTACAACATCATACTGTGCGGTATTGATATGATAGAATTCCCAAAGAGAGTGGCAAAAAATGCTGCTAACTTGATTAAAAAACTATGCAGgtgatgttcaaaagcgtagcttttatagcaggatcattctgcaaggacac Alignment from Exonerate_coding2genome CCCACCTTTCTCAGGCCCAGATCCAATGAAAACCTACAATATCATACTGCGGGGGATTGACATGATAGAATTTCCAAAGAAGATTGCAAAAAATGCTGCTAATTTAATTAAAAAACTATGCAG gtgttaggacctcttaaccttgcttacaccatcttctttcaaacttacagCCCACCTTTCTCAGGCCCAGATCCAATGAAAACCTACAACATCATACTGTGCGGTATTGATATGATAGAATTCCCAAAGAGAGTGGCAAAAAATGCTGCTAACTTGATTAAAAAACTATGCAGgtgatgttcaaaagcgtagcttttatagcaggatcattctgcaaggacac Alignment from GeneWise CCCACCTTTCTCAGGCCCAGATCCAATGAAAACCTACAATATCATACTGCGGGGGATTGACATGATAGAATTTCCAAAGAAGATTGCAAAAAATGCTGCTAATTTAATTAAAAAACTATGCAG gtgttaggacctcttaaccttgcttacaccatcttctttcaaacttacagCCCACCTTTCTCAGGCCCAGATCCAATGAAAACCTACAACATCATACTGTGCGGTATTGATATGATAGAATTCCCAAAGAGAGTGGCAAAAAATGCTGCTAACTTGATTAAAAAACTATGCAGgtgatgttcaaaagcgtagcttttatagcaggatcattctgcaaggacac #### Prkg1_ID6524_5 --> 1 - 0 Original Alignment tGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAG ttgcccatgcatgagtcctgtatccatttcccatgacatgtttatcatagtGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGTAAGCTGGCTGATGTCCTTGAAGAGgtaagtgttttaataatatataatgatgtttactcttatggcatatctca Alignment from CESAR tGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAG ttgcccatgcatgagtcctgtatccatttcccatgacatgtttatcatagtGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGTAAGCTGGCTGATGTCCTTGAAGAGgtaagtgttttaataatatataatgatgtttactcttatggcatatctca Alignment from Spaln_aa2Genome TGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAG ttgcccatgcatgagtcctgtatccatttcccatgacatgtttatcatagTGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGTAAGCTGGCTGATGTCCTTGAAGAGgtaagtgttttaataatatataatgatgtttactcttatggcatatctca Alignment from Spaln_nt2Genome TGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAG ttgcccatgcatgagtcctgtatccatttcccatgacatgtttatcatagTGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGTAAGCTGGCTGATGTCCTTGAAGAGgtaagtgttttaataatatataatgatgtttactcttatggcatatctca Alignment from Pairagon TGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAG ttgcccatgcatgagtcctgtatccatttcccatgacatgtttatcatagTGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGTAAGCTGGCTGATGTCCTTGAAGAGgtaagtgttttaataatatataatgatgtttactcttatggcatatctca Alignment from Exonerate_protein2genome TGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAG ttgcccatgcatgagtcctgtatccatttcccatgacatgtttatcatagTGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGTAAGCTGGCTGATGTCCTTGAAGAGgtaagtgttttaataatatataatgatgtttactcttatggcatatctca Alignment from Exonerate_coding2genome TGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAG ttgcccatgcatgagtcctgtatccatttcccatgacatgtttatcatagTGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGTAAGCTGGCTGATGTCCTTGAAGAGgtaagtgttttaataatatataatgatgtttactcttatggcatatctca Alignment from GeneWise TGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAG ttgcccatgcatgagtcctgtatccatttcccatgacatgtttatcatagTGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGTAAGCTGGCTGATGTCCTTGAAGAGgtaagtgttttaataatatataatgatgtttactcttatggcatatctca #### Prkg1_ID6564_3 --> 2 - 1 Original Alignment atGGGAAGGTTGAAGTCACAAAAGAAGGCGTGAAGCTCTGCACCATGGGTCCTGGAAAAGTGTTCGGGGAGCTGGCTATACTTTACAACTGTACCCGGACAGCGACCGTCAAGa ttaaaaacaaaattgggaaaggtctcaggccttctgttcttgtgtggcagatGGGAAGGTGGAAGTCACAAAGGAGGGTGTAAAGCTCTGCACCATT---CCTGGAAAAGTGTTTGGGGAGCTGGCATTACTTTACAATTGTACTCAAACACCAACCATCAAAagtgagacatctctgccttatcttgtccttttcaattactgaatcttcaag Alignment from CESAR atGGGAAGGTTGAAGTCACAAAAGAAGGCGTGAAGCTCTGCACCATGGGTCCTGGAAAAGTGTTCGGGGAGCTGGCTATACTTTACAACTGTACCCGGACAGCGACCGTCAAGa ttaaaaacaaaattgggaaaggtctcaggccttctgttcttgtgtggcagatGGGAAGGTGGAAGTCACAAAGGAGGGTGTAAAGCTCTGCACCATT---CCTGGAAAAGTGTTTGGGGAGCTGGCATTACTTTACAATTGTACTCAAACACCAACCATCAAAagtgagacatctctgccttatcttgtccttttcaattactgaatcttcaag Alignment from Spaln_aa2Genome ATGGGAAGGTTGAAGTCACAAAAGAAGGCGTGAAGCTCTGCACCATGGGTCCTGGAAAAGTGTTCGGGGAGCTGGCTATACTTTACAACTGTACCCGGACAGCGACCGTCAAGA ttaaaaacaaaattgggaaaggtctcaggccttctgttcttgtgtggcagATGGGAAGGTGGAAGTCACAAAGGAGGGTGTAAAGCTCTGCACCATT---CCTGGAAAAGTGTTTGGGGAGCTGGCATTACTTTACAATTGTACTCAAACACCAACCATCAAAAgtgagacatctctgccttatcttgtccttttcaattactgaatcttcaag Alignment from Spaln_nt2Genome ATGGGAAGGTTGAAGTCACAAAAGAAGGCGTGAAGCTCTGCACCATGGGTCCTGGAAAAGTGTTCGGGGAGCTGGCTATACTTTACAACTGTACCCGGACAGCGACCGTCAAGA ttaaaaacaaaattgggaaaggtctcaggccttctgttcttgtgtggcagATGGGAAGGTGGAAGTCACAAAGGAGGGTGTAAAGCTCTGCACCAT---TCCTGGAAAAGTGTTTGGGGAGCTGGCATTACTTTACAATTGTACTCAAACACCAACCATCAAAAgtgagacatctctgccttatcttgtccttttcaattactgaatcttcaag Alignment from Pairagon ATGGGAAGGTTGAAGTCACAAAAGAAGGCGTGAAGCTCTGCACCATGGGTCCTGGAAAAGTGTTCGGGGAGCTGGCTATACTTTACAACTGTACCCGGACAGCGACCGTCAAGA ttaaaaacaaaattgggaaaggtctcaggccttctgttcttgtgtggcagATGGGAAGGTGGAAGTCACAAAGGAGGGTGTAAAGCTCTGCACCAT---TCCTGGAAAAGTGTTTGGGGAGCTGGCATTACTTTACAATTGTACTCAAACACCAACCATCAAAAgtgagacatctctgccttatcttgtccttttcaattactgaatcttcaag Alignment from Exonerate_protein2genome ATGGGAAGGTTGAAGTCACAAAAGAAGGCGTGAAGCTCTGCACCATGGGTCCTGGAAAAGTGTTCGGGGAGCTGGCTATACTTTACAACTGTACCCGGACAGCGACCGTCAAGA ttaaaaacaaaattgggaaaggtctcaggccttctgttcttgtgtggcagATGGGAAGGTGGAAGTCACAAAGGAGGGTGTAAAGCTCTGCACCATT---CCTGGAAAAGTGTTTGGGGAGCTGGCATTACTTTACAATTGTACTCAAACACCAACCATCAAAAgtgagacatctctgccttatcttgtccttttcaattactgaatcttcaag Alignment from Exonerate_coding2genome ATGGGAAGGTTGAAGTCACAAAAGAAGGCGTGAAGCTCTGCACCATGGGTCCTGGAAAAGTGTTCGGGGAGCTGGCTATACTTTACAACTGTACCCGGACAGCGACCGTCAAGA ttaaaaacaaaattgggaaaggtctcaggccttctgttcttgtgtggcagATGGGAAGGTGGAAGTCACAAAGGAGGGTGTAAAGCTCTGCACCATT---CCTGGAAAAGTGTTTGGGGAGCTGGCATTACTTTACAATTGTACTCAAACACCAACCATCAAAAgtgagacatctctgccttatcttgtccttttcaattactgaatcttcaag Alignment from GeneWise ATGGGAAGGTTGAAGTCACAAAAGAAGGCGTGAAGCTCTGCACCATGGGTCCTGGAAAAGTGTTCGGGGAGCTGGCTATACTTTACAACTGTACCCGGACAGCGACCGTCAAGA ttaaaaacaaaattgggaaaggtctcaggccttctgttcttgtgtggcagATGGGAAGGTGGAAGTCACAAAGGAGGGTGTAAAGCTCTGCACCATT---CCTGGAAAAGTGTTTGGGGAGCTGGCATTACTTTACAATTGTACTCAAACACCAACCATCAAAAgtgagacatctctgccttatcttgtccttttcaattactgaatcttcaag #### Prkg1_ID6589_2 --> 1 - 1 Original Alignment gTCGAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTGGACTGTATGTACCCCGTGGAATACGGCAAGGACAGCTGCATCATCAAGGAAGGCGATGTGGGGTCACTGGTGTACGTCATGGAAg agatctcaacttttctaaaccacaagaattgttcttcattcttactgaaggTCAAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTTGATTGTATGTACCCTGTGGAATACGGCAAGGACAGCTGCATCATAAAGGAAGGTGATGTAGGGTCACTAGTGTATGTTATGGAAggtaagtgcttatatagtgtctctccagttacatataccttcttgcaaact Alignment from CESAR gTCGAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTGGACTGTATGTACCCCGTGGAATACGGCAAGGACAGCTGCATCATCAAGGAAGGCGATGTGGGGTCACTGGTGTACGTCATGGAAg agatctcaacttttctaaaccacaagaattgttcttcattcttactgaaggTCAAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTTGATTGTATGTACCCTGTGGAATACGGCAAGGACAGCTGCATCATAAAGGAAGGTGATGTAGGGTCACTAGTGTATGTTATGGAAggtaagtgcttatatagtgtctctccagttacatataccttcttgcaaact Alignment from Spaln_aa2Genome GTCGAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTGGACTGTATGTACCCCGTGGAATACGGCAAGGACAGCTGCATCATCAAGGAAGGCGATGTGGGGTCACTGGTGTACGTCATGGAAG agatctcaacttttctaaaccacaagaattgttcttcattcttactgaagGTCAAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTTGATTGTATGTACCCTGTGGAATACGGCAAGGACAGCTGCATCATAAAGGAAGGTGATGTAGGGTCACTAGTGTATGTTATGGAAGgtaagtgcttatatagtgtctctccagttacatataccttcttgcaaact Alignment from Spaln_nt2Genome GTCGAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTGGACTGTATGTACCCCGTGGAATACGGCAAGGACAGCTGCATCATCAAGGAAGGCGATGTGGGGTCACTGGTGTACGTCATGGAAG agatctcaacttttctaaaccacaagaattgttcttcattcttactgaagGTCAAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTTGATTGTATGTACCCTGTGGAATACGGCAAGGACAGCTGCATCATAAAGGAAGGTGATGTAGGGTCACTAGTGTATGTTATGGAAGgtaagtgcttatatagtgtctctccagttacatataccttcttgcaaact Alignment from Pairagon GTCGAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTGGACTGTATGTACCCCGTGGAATACGGCAAGGACAGCTGCATCATCAAGGAAGGCGATGTGGGGTCACTGGTGTACGTCATGGAAG agatctcaacttttctaaaccacaagaattgttcttcattcttactgaagGTCAAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTTGATTGTATGTACCCTGTGGAATACGGCAAGGACAGCTGCATCATAAAGGAAGGTGATGTAGGGTCACTAGTGTATGTTATGGAAGgtaagtgcttatatagtgtctctccagttacatataccttcttgcaaact Alignment from Exonerate_protein2genome GTCGAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTGGACTGTATGTACCCCGTGGAATACGGCAAGGACAGCTGCATCATCAAGGAAGGCGATGTGGGGTCACTGGTGTACGTCATGGAAG agatctcaacttttctaaaccacaagaattgttcttcattcttactgaagGTCAAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTTGATTGTATGTACCCTGTGGAATACGGCAAGGACAGCTGCATCATAAAGGAAGGTGATGTAGGGTCACTAGTGTATGTTATGGAAGgtaagtgcttatatagtgtctctccagttacatataccttcttgcaaact Alignment from Exonerate_coding2genome GTCGAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTGGACTGTATGTACCCCGTGGAATACGGCAAGGACAGCTGCATCATCAAGGAAGGCGATGTGGGGTCACTGGTGTACGTCATGGAAG agatctcaacttttctaaaccacaagaattgttcttcattcttactgaagGTCAAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTTGATTGTATGTACCCTGTGGAATACGGCAAGGACAGCTGCATCATAAAGGAAGGTGATGTAGGGTCACTAGTGTATGTTATGGAAGgtaagtgcttatatagtgtctctccagttacatataccttcttgcaaact Alignment from GeneWise GTCGAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTGGACTGTATGTACCCCGTGGAATACGGCAAGGACAGCTGCATCATCAAGGAAGGCGATGTGGGGTCACTGGTGTACGTCATGGAAG agatctcaacttttctaaaccacaagaattgttcttcattcttactgaagGTCAAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTTGATTGTATGTACCCTGTGGAATACGGCAAGGACAGCTGCATCATAAAGGAAGGTGATGTAGGGTCACTAGTGTATGTTATGGAAGgtaagtgcttatatagtgtctctccagttacatataccttcttgcaaact #### Prpf19_ID3049_8 --> 0 - 0 Original Alignment AGAGGAAAGACTGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTACCGGCAGGTGGCATCCCATGTG tacttcatttgttgcaacttgggcctttctgtcctctatgaccccaccagAGAGGAAAGACCGTCCCCAAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTACCGGCAGGTGGCATCCCATGTGgtgagtgctaagtgttaagtgactcccactgttccgaataacatggatgg Alignment from CESAR AGAGGAAAGACTGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTACCGGCAGGTGGCATCCCATGTG tacttcatttgttgcaacttgggcctttctgtcctctatgaccccaccagAGAGGAAAGACCGTCCCCAAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTACCGGCAGGTGGCATCCCATGTGgtgagtgctaagtgttaagtgactcccactgttccgaataacatggatgg Alignment from Spaln_aa2Genome AGAGGAAAGACTGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTACCGGCAGGTGGCATCCCATGTG tacttcatttgttgcaacttgggcctttctgtcctctatgaccccaccagAGAGGAAAGACCGTCCCCAAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTACCGGCAGGTGGCATCCCATGTGgtgagtgctaagtgttaagtgactcccactgttccgaataacatggatgg Alignment from Spaln_nt2Genome AGAGGAAAGACTGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTACCGGCAGGTGGCATCCCATGTG tacttcatttgttgcaacttgggcctttctgtcctctatgaccccaccagAGAGGAAAGACCGTCCCCAAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTACCGGCAGGTGGCATCCCATGTGgtgagtgctaagtgttaagtgactcccactgttccgaataacatggatgg Alignment from Pairagon AGAGGAAAGACTGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTACCGGCAGGTGGCATCCCATGTG tacttcatttgttgcaacttgggcctttctgtcctctatgaccccaccagAGAGGAAAGACCGTCCCCAAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTACCGGCAGGTGGCATCCCATGTGgtgagtgctaagtgttaagtgactcccactgttccgaataacatggatgg Alignment from Exonerate_protein2genome AGAGGAAAGACTGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTACCGGCAGGTGGCATCCCATGTG tacttcatttgttgcaacttgggcctttctgtcctctatgaccccaccagAGAGGAAAGACCGTCCCCAAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTACCGGCAGGTGGCATCCCATGTGgtgagtgctaagtgttaagtgactcccactgttccgaataacatggatgg Alignment from Exonerate_coding2genome AGAGGAAAGACTGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTACCGGCAGGTGGCATCCCATGTG tacttcatttgttgcaacttgggcctttctgtcctctatgaccccaccagAGAGGAAAGACCGTCCCCAAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTACCGGCAGGTGGCATCCCATGTGgtgagtgctaagtgttaagtgactcccactgttccgaataacatggatgg Alignment from GeneWise AGAGGAAAGACTGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTACCGGCAGGTGGCATCCCATGTG tacttcatttgttgcaacttgggcctttctgtcctctatgaccccaccagAGAGGAAAGACCGTCCCCAAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTACCGGCAGGTGGCATCCCATGTGgtgagtgctaagtgttaagtgactcccactgttccgaataacatggatgg #### Psat1_ID3961_8 --> 1 - 2 Original Alignment aTGCCCAGTGGAGCGCCAGAATAGAAGCAGGATGAACATCCCATTTCGCATTGGCAACGCCAAAGGAGACGAAGCTTTGGAAAAGCGGTTTCTTGACAAGGCGGTAGAACTCAACATGATCTCCTTGAAGGGGCACag ttgataatgttcctcctagagatccacatgccttcttttcttctttccagcTGCCCAGTGGAACGCCAGAATAGAAGCCGGATGAACATCCCATTTCGTATTGGCAATGCCAAAGGAGACAAAGCTTTAGAAAAGCGGTTCCTTGACAAGGCGGTAGAACTCAATATGATATCATTGAAGGGGCACaagtgagtgagattcctccccaggcctgtggcttaaagttaccggtacttct Alignment from CESAR aTGCCCAGTGGAGCGCCAGAATAGAAGCAGGATGAACATCCCATTTCGCATTGGCAACGCCAAAGGAGACGAAGCTTTGGAAAAGCGGTTTCTTGACAAGGCGGTAGAACTCAACATGATCTCCTTGAAGGGGCACag ttgataatgttcctcctagagatccacatgccttcttttcttctttccagcTGCCCAGTGGAACGCCAGAATAGAAGCCGGATGAACATCCCATTTCGTATTGGCAATGCCAAAGGAGACAAAGCTTTAGAAAAGCGGTTCCTTGACAAGGCGGTAGAACTCAATATGATATCATTGAAGGGGCACaagtgagtgagattcctccccaggcctgtggcttaaagttaccggtacttct Alignment from Spaln_aa2Genome ATGCCCAGTGGAGCGCCAGAATAGAAGCAGGATGAACATCCCATTTCGCATTGGCAACGCCAAAGGAGACGAAGCTTTGGAAAAGCGGTTTCTTGACAAGGCGGTAGAACTCAACATGATCTCCTTGAAGGGGCACAG ttgataatgttcctcctagagatccacatgccttcttttcttctttccagCTGCCCAGTGGAACGCCAGAATAGAAGCCGGATGAACATCCCATTTCGTATTGGCAATGCCAAAGGAGACAAAGCTTTAGAAAAGCGGTTCCTTGACAAGGCGGTAGAACTCAATATGATATCATTGAAGGGGCACAAgtgagtgagattcctccccaggcctgtggcttaaagttaccggtacttct Alignment from Spaln_nt2Genome ATGCCCAGTGGAGCGCCAGAATAGAAGCAGGATGAACATCCCATTTCGCATTGGCAACGCCAAAGGAGACGAAGCTTTGGAAAAGCGGTTTCTTGACAAGGCGGTAGAACTCAACATGATCTCCTTGAAGGGGCACAG ttgataatgttcctcctagagatccacatgccttcttttcttctttccagCTGCCCAGTGGAACGCCAGAATAGAAGCCGGATGAACATCCCATTTCGTATTGGCAATGCCAAAGGAGACAAAGCTTTAGAAAAGCGGTTCCTTGACAAGGCGGTAGAACTCAATATGATATCATTGAAGGGGCACAAgtgagtgagattcctccccaggcctgtggcttaaagttaccggtacttct Alignment from Pairagon ATGCCCAGTGGAGCGCCAGAATAGAAGCAGGATGAACATCCCATTTCGCATTGGCAACGCCAAAGGAGACGAAGCTTTGGAAAAGCGGTTTCTTGACAAGGCGGTAGAACTCAACATGATCTCCTTGAAGGGGCACAG ttgataatgttcctcctagagatccacatgccttcttttcttctttccagCTGCCCAGTGGAACGCCAGAATAGAAGCCGGATGAACATCCCATTTCGTATTGGCAATGCCAAAGGAGACAAAGCTTTAGAAAAGCGGTTCCTTGACAAGGCGGTAGAACTCAATATGATATCATTGAAGGGGCACAAgtgagtgagattcctccccaggcctgtggcttaaagttaccggtacttct Alignment from Exonerate_protein2genome ATGCCCAGTGGAGCGCCAGAATAGAAGCAGGATGAACATCCCATTTCGCATTGGCAACGCCAAAGGAGACGAAGCTTTGGAAAAGCGGTTTCTTGACAAGGCGGTAGAACTCAACATGATCTCCTTGAAGGGGCACAG ttgataatgttcctcctagagatccacatgccttcttttcttctttccagCTGCCCAGTGGAACGCCAGAATAGAAGCCGGATGAACATCCCATTTCGTATTGGCAATGCCAAAGGAGACAAAGCTTTAGAAAAGCGGTTCCTTGACAAGGCGGTAGAACTCAATATGATATCATTGAAGGGGCACAAgtgagtgagattcctccccaggcctgtggcttaaagttaccggtacttct Alignment from Exonerate_coding2genome ATGCCCAGTGGAGCGCCAGAATAGAAGCAGGATGAACATCCCATTTCGCATTGGCAACGCCAAAGGAGACGAAGCTTTGGAAAAGCGGTTTCTTGACAAGGCGGTAGAACTCAACATGATCTCCTTGAAGGGGCACAG ttgataatgttcctcctagagatccacatgccttcttttcttctttccagCTGCCCAGTGGAACGCCAGAATAGAAGCCGGATGAACATCCCATTTCGTATTGGCAATGCCAAAGGAGACAAAGCTTTAGAAAAGCGGTTCCTTGACAAGGCGGTAGAACTCAATATGATATCATTGAAGGGGCACAAgtgagtgagattcctccccaggcctgtggcttaaagttaccggtacttct Alignment from GeneWise ATGCCCAGTGGAGCGCCAGAATAGAAGCAGGATGAACATCCCATTTCGCATTGGCAACGCCAAAGGAGACGAAGCTTTGGAAAAGCGGTTTCTTGACAAGGCGGTAGAACTCAACATGATCTCCTTGAAGGGGCACAG ttgataatgttcctcctagagatccacatgccttcttttcttctttccagCTGCCCAGTGGAACGCCAGAATAGAAGCCGGATGAACATCCCATTTCGTATTGGCAATGCCAAAGGAGACAAAGCTTTAGAAAAGCGGTTCCTTGACAAGGCGGTAGAACTCAATATGATATCATTGAAGGGGCACAAgtgagtgagattcctccccaggcctgtggcttaaagttaccggtacttct #### Psat1_ID3963_6 --> 0 - 2 Original Alignment TTTGGTGTGATTTTCGCTGGTGCTCAGAAGAATGTTGGCTCTGCCGGGGTGACGGTGGTGATTGTCCGGGATGACCTGCTGGGGTTCTCGCTCAGAGAGTGCCCATCAGTCCTTGACTACAAAGTGCAGGCTGGGAACAACTCTTTGTATAACACACCTCCGTGCTTCag ccattgctctttctgagtgggttgaatttcagcccaccttccacccacagTTCGGTGTGATCTTCACAGGTGCTCATAAAAATGTTGGCTCTGCTGGCCTGATG---GTGATTGTCCAAGATGACCTGCTGGGTTTCTCACTCAGAGAGTGCCCTTCAGTCCTTGACTACAAAGTGCGGGCAGGGAACAACTCTTTGTACAATACACCTCCATGCTTCaggtgagtgtacaagcagttaagtcgttttccaacacgggagtgagagcact Alignment from CESAR TTTGGTGTGATTTTCGCTGGTGCTCAGAAGAATGTTGGCTCTGCCGGGGTGACGGTGGTGATTGTCCGGGATGACCTGCTGGGGTTCTCGCTCAGAGAGTGCCCATCAGTCCTTGACTACAAAGTGCAGGCTGGGAACAACTCTTTGTATAACACACCTCCGTGCTTCag ccattgctctttctgagtgggttgaatttcagcccaccttccacccacagTTCGGTGTGATCTTCACAGGTGCTCATAAAAATGTTGGCTCTGCTGGCCTG---ATGGTGATTGTCCAAGATGACCTGCTGGGTTTCTCACTCAGAGAGTGCCCTTCAGTCCTTGACTACAAAGTGCGGGCAGGGAACAACTCTTTGTACAATACACCTCCATGCTTCaggtgagtgtacaagcagttaagtcgttttccaacacgggagtgagagcact Alignment from Spaln_aa2Genome TTTGGTGTGATTTTCGCTGGTGCTCAGAAGAATGTTGGCTCTGCCGGGGTGACGGTGGTGATTGTCCGGGATGACCTGCTGGGGTTCTCGCTCAGAGAGTGCCCATCAGTCCTTGACTACAAAGTGCAGGCTGGGAACAACTCTTTGTATAACACACCTCCGTGCTTCAG ccattgctctttctgagtgggttgaatttcagcccaccttccacccacagTTCGGTGTGATCTTCACAGGTGCTCATAAAAATGTTGGCTCTGCTGGCCTG---ATGGTGATTGTCCAAGATGACCTGCTGGGTTTCTCACTCAGAGAGTGCCCTTCAGTCCTTGACTACAAAGTGCGGGCAGGGAACAACTCTTTGTACAATACACCTCCATGCTTCAGgtgagtgtacaagcagttaagtcgttttccaacacgggagtgagagcact Alignment from Spaln_nt2Genome TTTGGTGTGATTTTCGCTGGTGCTCAGAAGAATGTTGGCTCTGCCGGGGTGACGGTGGTGATTGTCCGGGATGACCTGCTGGGGTTCTCGCTCAGAGAGTGCCCATCAGTCCTTGACTACAAAGTGCAGGCTGGGAACAACTCTTTGTATAACACACCTCCGTGCTTCAG ccattgctctttctgagtgggttgaatttcagcccaccttccacccacagTTCGGTGTGATCTTCACAGGTGCTCATAAAAATGTTGGCTCTGCTGGCCTGA---TGGTGATTGTCCAAGATGACCTGCTGGGTTTCTCACTCAGAGAGTGCCCTTCAGTCCTTGACTACAAAGTGCGGGCAGGGAACAACTCTTTGTACAATACACCTCCATGCTTCAGgtgagtgtacaagcagttaagtcgttttccaacacgggagtgagagcact Alignment from Pairagon TTTGGTGTGATTTTCGCTGGTGCTCAGAAGAATGTTGGCTCTGCCGGGGTGACGGTGGTGATTGTCCGGGATGACCTGCTGGGGTTCTCGCTCAGAGAGTGCCCATCAGTCCTTGACTACAAAGTGCAGGCTGGGAACAACTCTTTGTATAACACACCTCCGTGCTTCAG ccattgctctttctgagtgggttgaatttcagcccaccttccacccacagTTCGGTGTGATCTTCACAGGTGCTCATAAAAATGTTGGCTCTGCTGGCCTGA---TGGTGATTGTCCAAGATGACCTGCTGGGTTTCTCACTCAGAGAGTGCCCTTCAGTCCTTGACTACAAAGTGCGGGCAGGGAACAACTCTTTGTACAATACACCTCCATGCTTCAGgtgagtgtacaagcagttaagtcgttttccaacacgggagtgagagcact Alignment from Exonerate_protein2genome TTTGGTGTGATTTTCGCTGGTGCTCAGAAGAATGTTGGCTCTGCCGGGGTGACGGTGGTGATTGTCCGGGATGACCTGCTGGGGTTCTCGCTCAGAGAGTGCCCATCAGTCCTTGACTACAAAGTGCAGGCTGGGAACAACTCTTTGTATAACACACCTCCGTGCTTCAG ccattgctctttctgagtgggttgaatttcagcccaccttccacccacagTTCGGTGTGATCTTCACAGGTGCTCATAAAAATGTTGGCTCTGCTGGCCTG---ATGGTGATTGTCCAAGATGACCTGCTGGGTTTCTCACTCAGAGAGTGCCCTTCAGTCCTTGACTACAAAGTGCGGGCAGGGAACAACTCTTTGTACAATACACCTCCATGCTTCAGgtgagtgtacaagcagttaagtcgttttccaacacgggagtgagagcact Alignment from Exonerate_coding2genome TTTGGTGTGATTTTCGCTGGTGCTCAGAAGAATGTTGGCTCTGCCGGGGTGACGGTGGTGATTGTCCGGGATGACCTGCTGGGGTTCTCGCTCAGAGAGTGCCCATCAGTCCTTGACTACAAAGTGCAGGCTGGGAACAACTCTTTGTATAACACACCTCCGTGCTTCAG ccattgctctttctgagtgggttgaatttcagcccaccttccacccacagTTCGGTGTGATCTTCACAGGTGCTCATAAAAATGTTGGCTCTGCTGGCCTG---ATGGTGATTGTCCAAGATGACCTGCTGGGTTTCTCACTCAGAGAGTGCCCTTCAGTCCTTGACTACAAAGTGCGGGCAGGGAACAACTCTTTGTACAATACACCTCCATGCTTCAGgtgagtgtacaagcagttaagtcgttttccaacacgggagtgagagcact Alignment from GeneWise TTTGGTGTGATTTTCGCTGGTGCTCAGAAGAATGTTGGCTCTGCCGGGGTGACGGTGGTGATTGTCCGGGATGACCTGCTGGGGTTCTCGCTCAGAGAGTGCCCATCAGTCCTTGACTACAAAGTGCAGGCTGGGAACAACTCTTTGTATAACACACCTCCGTGCTTCAG ccattgctctttctgagtgggttgaatttcagcccaccttccacccacagTTCGGTGTGATCTTCACAGGTGCTCATAAAAATGTTGGCTCTGCTGGCCTG---ATGGTGATTGTCCAAGATGACCTGCTGGGTTTCTCACTCAGAGAGTGCCCTTCAGTCCTTGACTACAAAGTGCGGGCAGGGAACAACTCTTTGTACAATACACCTCCATGCTTCAGgtgagtgtacaagcagttaagtcgttttccaacacgggagtgagagcact #### Psat1_ID3967_2 --> 0 - 1 Original Alignment GTATTGTTGGAGATCCAGAAGCAGCTACTAGACTACAGAGGACTCGGCATCAGTGTGCTCg agatcaggcagccatctgcagtggctagtgtcgacaacccgctgaagcagGTGCTCTTGGAGATCCAGAAGCAGCTACTAGATTACAGAGGACTTGGTGTTAGTGTACTAggtaagatcttcttttgccatggcatactaaattaagagccccattcccag Alignment from CESAR GTATTGTTGGAGATCCAGAAGCAGCTACTAGACTACAGAGGACTCGGCATCAGTGTGCTCg agatcaggcagccatctgcagtggctagtgtcgacaacccgctgaagcagGTGCTCTTGGAGATCCAGAAGCAGCTACTAGATTACAGAGGACTTGGTGTTAGTGTACTAggtaagatcttcttttgccatggcatactaaattaagagccccattcccag Alignment from Spaln_aa2Genome GTATTGTTGGAGATCCAGAAGCAGCTACTAGACTACAGAGGACTCGGCATCAGTGTGCTCG agatcaggcagccatctgcagtggctagtgtcgacaacccgctgaagcagGTGCTCTTGGAGATCCAGAAGCAGCTACTAGATTACAGAGGACTTGGTGTTAGTGTACTAGgtaagatcttcttttgccatggcatactaaattaagagccccattcccag Alignment from Spaln_nt2Genome GTATTGTTGGAGATCCAGAAGCAGCTACTAGACTACAGAGGACTCGGCATCAGTGTGCTCG agatcaggcagccatctgcagtggctagtgtcgacaacccgctgaagcagGTGCTCTTGGAGATCCAGAAGCAGCTACTAGATTACAGAGGACTTGGTGTTAGTGTACTAGgtaagatcttcttttgccatggcatactaaattaagagccccattcccag Alignment from Pairagon GTATTGTTGGAGATCCAGAAGCAGCTACTAGACTACAGAGGACTCGGCATCAGTGTGCTCG agatcaggcagccatctgcagtggctagtgtcgacaacccgctgaagcagGTGCTCTTGGAGATCCAGAAGCAGCTACTAGATTACAGAGGACTTGGTGTTAGTGTACTAGgtaagatcttcttttgccatggcatactaaattaagagccccattcccag Alignment from Exonerate_protein2genome GTATTGTTGGAGATCCAGAAGCAGCTACTAGACTACAGAGGACTCGGCATCAGTGTGCTCG agatcaggcagccatctgcagtggctagtgtcgacaacccgctgaagcagGTGCTCTTGGAGATCCAGAAGCAGCTACTAGATTACAGAGGACTTGGTGTTAGTGTACTAGgtaagatcttcttttgccatggcatactaaattaagagccccattcccag Alignment from Exonerate_coding2genome GTATTGTTGGAGATCCAGAAGCAGCTACTAGACTACAGAGGACTCGGCATCAGTGTGCTCG agatcaggcagccatctgcagtggctagtgtcgacaacccgctgaagcagGTGCTCTTGGAGATCCAGAAGCAGCTACTAGATTACAGAGGACTTGGTGTTAGTGTACTAGgtaagatcttcttttgccatggcatactaaattaagagccccattcccag Alignment from GeneWise GTATTGTTGGAGATCCAGAAGCAGCTACTAGACTACAGAGGACTCGGCATCAGTGTGCTCG agatcaggcagccatctgcagtggctagtgtcgacaacccgctgaagcagGTGCTCTTGGAGATCCAGAAGCAGCTACTAGATTACAGAGGACTTGGTGTTAGTGTACTAGgtaagatcttcttttgccatggcatactaaattaagagccccattcccag #### Ptar1_ID5193_3 --> 2 - 2 Original Alignment aaCTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCag aagcataatgcataggttacctcaacaactttttctactttcttcaacagaaCTGGCTGATGTCACCTGTACCCTGCTGCTTCTCAACCCAGATTTCACCACACCTTGGAATGTCaggtgagggcaggccctcaaggttaaaaatgtcaatcacccacagcaggcag Alignment from CESAR aaCTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCag aagcataatgcataggttacctcaacaactttttctactttcttcaacagaaCTGGCTGATGTCACCTGTACCCTGCTGCTTCTCAACCCAGATTTCACCACACCTTGGAATGTCaggtgagggcaggccctcaaggttaaaaatgtcaatcacccacagcaggcag Alignment from Spaln_aa2Genome AACTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCAG aagcataatgcataggttacctcaacaactttttctactttcttcaacagAACTGGCTGATGTCACCTGTACCCTGCTGCTTCTCAACCCAGATTTCACCACACCTTGGAATGTCAGgtgagggcaggccctcaaggttaaaaatgtcaatcacccacagcaggcag Alignment from Spaln_nt2Genome AACTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCAG aagcataatgcataggttacctcaacaactttttctactttcttcaacagAACTGGCTGATGTCACCTGTACCCTGCTGCTTCTCAACCCAGATTTCACCACACCTTGGAATGTCAGgtgagggcaggccctcaaggttaaaaatgtcaatcacccacagcaggcag Alignment from Pairagon AACTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCAG aagcataatgcataggttacctcaacaactttttctactttcttcaacagAACTGGCTGATGTCACCTGTACCCTGCTGCTTCTCAACCCAGATTTCACCACACCTTGGAATGTCAGgtgagggcaggccctcaaggttaaaaatgtcaatcacccacagcaggcag Alignment from Exonerate_protein2genome AACTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCAG aagcataatgcataggttacctcaacaactttttctactttcttcaacagAACTGGCTGATGTCACCTGTACCCTGCTGCTTCTCAACCCAGATTTCACCACACCTTGGAATGTCAGgtgagggcaggccctcaaggttaaaaatgtcaatcacccacagcaggcag Alignment from Exonerate_coding2genome AACTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCAG aagcataatgcataggttacctcaacaactttttctactttcttcaacagAACTGGCTGATGTCACCTGTACCCTGCTGCTTCTCAACCCAGATTTCACCACACCTTGGAATGTCAGgtgagggcaggccctcaaggttaaaaatgtcaatcacccacagcaggcag Alignment from GeneWise AACTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCAG aagcataatgcataggttacctcaacaactttttctactttcttcaacagAACTGGCTGATGTCACCTGTACCCTGCTGCTTCTCAACCCAGATTTCACCACACCTTGGAATGTCAGgtgagggcaggccctcaaggttaaaaatgtcaatcacccacagcaggcag #### Pten_ID6742_2 --> 2 - 2 Original Alignment atATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTATACAGGAACAATATTGATGATGTAGTAag agttgtggctagtgtggtatggactggatgaaggctctgtctctccctagatATTTATCCAAACATTATAGCTAAGGGTTTTCCTGCGGAAAGACTTGAAGGTGTGTACAGGAACAATATTGATGACGTAGTGaggtacggacagctgatgtgttttacttcctatatcagttattacattgagg Alignment from CESAR atATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTATACAGGAACAATATTGATGATGTAGTAag agttgtggctagtgtggtatggactggatgaaggctctgtctctccctagatATTTATCCAAACATTATAGCTAAGGGTTTTCCTGCGGAAAGACTTGAAGGTGTGTACAGGAACAATATTGATGACGTAGTGaggtacggacagctgatgtgttttacttcctatatcagttattacattgagg Alignment from Spaln_aa2Genome ATATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTATACAGGAACAATATTGATGATGTAGTAAG agttgtggctagtgtggtatggactggatgaaggctctgtctctccctagATATTTATCCAAACATTATAGCTAAGGGTTTTCCTGCGGAAAGACTTGAAGGTGTGTACAGGAACAATATTGATGACGTAGTGAGgtacggacagctgatgtgttttacttcctatatcagttattacattgagg Alignment from Spaln_nt2Genome ATATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTATACAGGAACAATATTGATGATGTAGTAAG agttgtggctagtgtggtatggactggatgaaggctctgtctctccctagATATTTATCCAAACATTATAGCTAAGGGTTTTCCTGCGGAAAGACTTGAAGGTGTGTACAGGAACAATATTGATGACGTAGTGAGgtacggacagctgatgtgttttacttcctatatcagttattacattgagg Alignment from Pairagon ATATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTATACAGGAACAATATTGATGATGTAGTAAG agttgtggctagtgtggtatggactggatgaaggctctgtctctccctagATATTTATCCAAACATTATAGCTAAGGGTTTTCCTGCGGAAAGACTTGAAGGTGTGTACAGGAACAATATTGATGACGTAGTGAGgtacggacagctgatgtgttttacttcctatatcagttattacattgagg Alignment from Exonerate_protein2genome ATATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTATACAGGAACAATATTGATGATGTAGTAAG agttgtggctagtgtggtatggactggatgaaggctctgtctctccctagATATTTATCCAAACATTATAGCTAAGGGTTTTCCTGCGGAAAGACTTGAAGGTGTGTACAGGAACAATATTGATGACGTAGTGAGgtacggacagctgatgtgttttacttcctatatcagttattacattgagg Alignment from Exonerate_coding2genome ATATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTATACAGGAACAATATTGATGATGTAGTAAG agttgtggctagtgtggtatggactggatgaaggctctgtctctccctagATATTTATCCAAACATTATAGCTAAGGGTTTTCCTGCGGAAAGACTTGAAGGTGTGTACAGGAACAATATTGATGACGTAGTGAGgtacggacagctgatgtgttttacttcctatatcagttattacattgagg Alignment from GeneWise ATATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTATACAGGAACAATATTGATGATGTAGTAAG agttgtggctagtgtggtatggactggatgaaggctctgtctctccctagATATTTATCCAAACATTATAGCTAAGGGTTTTCCTGCGGAAAGACTTGAAGGTGTGTACAGGAACAATATTGATGACGTAGTGAGgtacggacagctgatgtgttttacttcctatatcagttattacattgagg #### Pten_ID6749_7 --> 2 - 0 Original Alignment atCCTCAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCGGGAGGACAAGTTCATGTACTTTGAGTTCCCTCAGCCATTGCCTGTGTGTGGTGATATCAAAGTAGAGTTCTTCCACAAACAGAACAAGATGCTCAAAAAG gctaaatagtctgagatgcagtttgatcctctgactcgtgtgtgttacagatCCCCAGTTTGTTGTCTGCCAACTTAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCTGGATGACAAGTTAATGTACTTTGAGTTCCCTCAGCCATTGCCTGTATGTGGTGATATCAAAGTAGAGTTTATCCACAAGCGGAACAAGATGCTCAAAAGGgtaagtaacactttagagtaatcatacttcaggtatagtctctgcttggt Alignment from CESAR atCCTCAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCGGGAGGACAAGTTCATGTACTTTGAGTTCCCTCAGCCATTGCCTGTGTGTGGTGATATCAAAGTAGAGTTCTTCCACAAACAGAACAAGATGCTCAAAAAG gctaaatagtctgagatgcagtttgatcctctgactcgtgtgtgttacagatCCCCAGTTTGTTGTCTGCCAACTTAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCTGGATGACAAGTTAATGTACTTTGAGTTCCCTCAGCCATTGCCTGTATGTGGTGATATCAAAGTAGAGTTTATCCACAAGCGGAACAAGATGCTCAAAAGGgtaagtaacactttagagtaatcatacttcaggtatagtctctgcttggt Alignment from Spaln_aa2Genome ATCCTCAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCGGGAGGACAAGTTCATGTACTTTGAGTTCCCTCAGCCATTGCCTGTGTGTGGTGATATCAAAGTAGAGTTCTTCCACAAACAGAACAAGATGCTCAAAAAG gctaaatagtctgagatgcagtttgatcctctgactcgtgtgtgttacagATCCCCAGTTTGTTGTCTGCCAACTTAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCTGGATGACAAGTTAATGTACTTTGAGTTCCCTCAGCCATTGCCTGTATGTGGTGATATCAAAGTAGAGTTTATCCACAAGCGGAACAAGATGCTCAAAAGGgtaagtaacactttagagtaatcatacttcaggtatagtctctgcttggt Alignment from Spaln_nt2Genome ATCCTCAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCGGGAGGACAAGTTCATGTACTTTGAGTTCCCTCAGCCATTGCCTGTGTGTGGTGATATCAAAGTAGAGTTCTTCCACAAACAGAACAAGATGCTCAAAAAG gctaaatagtctgagatgcagtttgatcctctgactcgtgtgtgttacagATCCCCAGTTTGTTGTCTGCCAACTTAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCTGGATGACAAGTTAATGTACTTTGAGTTCCCTCAGCCATTGCCTGTATGTGGTGATATCAAAGTAGAGTTTATCCACAAGCGGAACAAGATGCTCAAAAGGgtaagtaacactttagagtaatcatacttcaggtatagtctctgcttggt Alignment from Pairagon ATCCTCAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCGGGAGGACAAGTTCATGTACTTTGAGTTCCCTCAGCCATTGCCTGTGTGTGGTGATATCAAAGTAGAGTTCTTCCACAAACAGAACAAGATGCTCAAAAAG gctaaatagtctgagatgcagtttgatcctctgactcgtgtgtgttacagATCCCCAGTTTGTTGTCTGCCAACTTAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCTGGATGACAAGTTAATGTACTTTGAGTTCCCTCAGCCATTGCCTGTATGTGGTGATATCAAAGTAGAGTTTATCCACAAGCGGAACAAGATGCTCAAAAGGgtaagtaacactttagagtaatcatacttcaggtatagtctctgcttggt Alignment from Exonerate_protein2genome ATCCTCAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCGGGAGGACAAGTTCATGTACTTTGAGTTCCCTCAGCCATTGCCTGTGTGTGGTGATATCAAAGTAGAGTTCTTCCACAAACAGAACAAGATGCTCAAAAAG gctaaatagtctgagatgcagtttgatcctctgactcgtgtgtgttacagATCCCCAGTTTGTTGTCTGCCAACTTAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCTGGATGACAAGTTAATGTACTTTGAGTTCCCTCAGCCATTGCCTGTATGTGGTGATATCAAAGTAGAGTTTATCCACAAGCGGAACAAGATGCTCAAAAGGgtaagtaacactttagagtaatcatacttcaggtatagtctctgcttggt Alignment from Exonerate_coding2genome ATCCTCAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCGGGAGGACAAGTTCATGTACTTTGAGTTCCCTCAGCCATTGCCTGTGTGTGGTGATATCAAAGTAGAGTTCTTCCACAAACAGAACAAGATGCTCAAAAAG gctaaatagtctgagatgcagtttgatcctctgactcgtgtgtgttacagATCCCCAGTTTGTTGTCTGCCAACTTAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCTGGATGACAAGTTAATGTACTTTGAGTTCCCTCAGCCATTGCCTGTATGTGGTGATATCAAAGTAGAGTTTATCCACAAGCGGAACAAGATGCTCAAAAGGgtaagtaacactttagagtaatcatacttcaggtatagtctctgcttggt Alignment from GeneWise ATCCTCAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCGGGAGGACAAGTTCATGTACTTTGAGTTCCCTCAGCCATTGCCTGTGTGTGGTGATATCAAAGTAGAGTTCTTCCACAAACAGAACAAGATGCTCAAAAAG gctaaatagtctgagatgcagtttgatcctctgactcgtgtgtgttacagATCCCCAGTTTGTTGTCTGCCAACTTAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCTGGATGACAAGTTAATGTACTTTGAGTTCCCTCAGCCATTGCCTGTATGTGGTGATATCAAAGTAGAGTTTATCCACAAGCGGAACAAGATGCTCAAAAGGgtaagtaacactttagagtaatcatacttcaggtatagtctctgcttggt #### Pygm_ID1681_5 --> 0 - 0 Original Alignment ATGGAAGAAGCTGATGACTGGCTTCGCTATGGCAACCCCTGGGAGAAGGCCCGCCCAGAGTTCACGCTGCCTGTGCACTTCTATGGCCGAGTGGAGCACACCAGCCAGGGTGCCAAGTGGGTGGACACACAG aacagcaagtgtttcgagccacctgttgtatttctttttcccttctctagATGGAAGAGGCAGATGAC---------------------TGGGAGAAAGCTCAGCCTGAATTCATGTTGCCGGTCCACTACTGTGGGCGAGTAGAACACACCAGCCAAGGTGGCAAATGGGTATACACACAGgtaacagtcactattggtagacgtggttggagggcagggggatcaggtct Alignment from CESAR ATGGAAGAAGCTGATGACTGGCTTCGCTATGGCAACCCCTGGGAGAAGGCCCGCCCAGAGTTCACGCTGCCTGTGCACTTCTATGGCCGAGTGGAGCACACCAGCCAGGGTGCCAAGTGGGTGGACACACAG aacagcaagtgtttcgagccacctgttgtatttctttttcccttctctagATGGAAGAGGCAGATGAC---------------------TGGGAGAAAGCTCAGCCTGAATTCATGTTGCCGGTCCACTACTGTGGGCGAGTAGAACACACCAGCCAAGGTGGCAAATGGGTATACACACAGgtaacagtcactattggtagacgtggttggagggcagggggatcaggtct Alignment from Spaln_aa2Genome ATGGAAGAAGCTGATGACTGGCTTCGCTATGGCAACCCCTGGGAGAAGGCCCGCCCAGAGTTCACGCTGCCTGTGCACTTCTATGGCCGAGTGGAGCACACCAGCCAGGGTGCCAAGTGGGTGGACACACAG aacagcaagtgtttcgagccacctgttgtatttctttttcccttctctagATGGAAGAGGCAGATGAC---------------------TGGGAGAAAGCTCAGCCTGAATTCATGTTGCCGGTCCACTACTGTGGGCGAGTAGAACACACCAGCCAAGGTGGCAAATGGGTATACACACAGgtaacagtcactattggtagacgtggttggagggcagggggatcaggtct Alignment from Spaln_nt2Genome ATGGAAGAAGCTGATGACTGGCTTCGCTATGGCAACCCCTGGGAGAAGGCCCGCCCAGAGTTCACGCTGCCTGTGCACTTCTATGGCCGAGTGGAGCACACCAGCCAGGGTGCCAAGTGGGTGGACACACAG aacagcaagtgtttcgagccacctgttgtatttctttttcccttctctagATGGAAGAGGCAGATGA---------------------CTGGGAGAAAGCTCAGCCTGAATTCATGTTGCCGGTCCACTACTGTGGGCGAGTAGAACACACCAGCCAAGGTGGCAAATGGGTATACACACAGgtaacagtcactattggtagacgtggttggagggcagggggatcaggtct Alignment from Pairagon ATGGAAGAAGCTGATGACTGGCTTCGCTATGGCAACCCCTGGGAGAAGGCCCGCCCAGAGTTCACGCTGCCTGTGCACTTCTATGGCCGAGTGGAGCACACCAGCCAGGGTGCCAAGTGGGTGGACACACAG aacagcaagtgtttcgagccacctgttgtatttctttttcccttctctagATGGAAGAGGCAGATGA---------------------CTGGGAGAAAGCTCAGCCTGAATTCATGTTGCCGGTCCACTACTGTGGGCGAGTAGAACACACCAGCCAAGGTGGCAAATGGGTATACACACAGgtaacagtcactattggtagacgtggttggagggcagggggatcaggtct Alignment from Exonerate_protein2genome CTTCGCTATGGCAACCCCTGGGAGAAGGCCCGCCCAGAGTTCACGCTGCCTGTGCACTTCTATGGCCGAGTGGAGCACACCAGCCAGGGTGCCAAGTGGGTGGACACACAG aacagcaagtgtttcgagccacctgttgtatttctttttcccttctctagATGGAAGAGGCAGATGACTGGGAGAAAGCTCAGCCTGAATTCATGTTGCCGGTCCACTACTGTGGGCGAGTAGAACACACCAGCCAAGGTGGCAAATGGGTATACACACAGgtaacagtcactattggtagacgtggttggagggcagggggatcaggtct Alignment from Exonerate_coding2genome aacagcaagtgtttcgagccacctgttgtatttctttttcccttctctagatggaagaggcagatgactgggagaaagctcagcctgaattcatgttgccggtccactactgtgggcgagtagaacacaccagccaaggtggcaaatgggtatacacacaggtaacagtcactattggtagacgtggttggagggcagggggatcaggtct Alignment from GeneWise ATGGAAGAAGCTGATGACTGGCTTCGCTATGGCAACCCCTGGGAGAAGGCCCGCCCAGAGTTCACGCTGCCTGTGCACTTCTATGGCCGAGTGGAGCACACCAGCCAGGGTGCCAAGTGGGTGGACACACAG aacagcaagtgtttcgagccacctgttgtatttctttttcccttctctagATGGAAGAGGCAGATGACTGG---------------------GAGAAAGCTCAGCCTGAATTCATGTTGCCGGTCCACTACTGTGGGCGAGTAGAACACACCAGCCAAGGTGGCAAATGGGTATACACACAGgtaacagtcactattggtagacgtggttggagggcagggggatcaggtct #### Pygm_ID1683_7 --> 2 - 0 Original Alignment tcAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT ttgcccatctcttgcagttaacactgagcctctaatctgtgtttctgcagtcAATGTTGGTGGTTACATTCTGGCTGTGTTAGACCGAAACCTATCTGAGAACATCTCCCGTGTATTATACCCCAATGATAATgtgagtcaccctccaccagaggaaataaacctaggaaactgtgcaggggt Alignment from CESAR tcAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT gagtccatctcttgcagttaacactgagcctctaatctgtgtttctgcagtcAATGTTGGTGGTTACATTCTGGCTGTGTTAGACCGAAACCTATCTGAGAACATCTCCCGTGTATTATACCCCAATGATAATgtgagtcaccctccaccagaggaaataaacctaggaaactgtgcaggggt Alignment from Spaln_aa2Genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT ttgcccatctcttgcagttaacactgagcctctaatctgtgtttctgcagTCAATGTTGGTGGTTACATTCTGGCTGTGTTAGACCGAAACCTATCTGAGAACATCTCCCGTGTATTATACCCCAATGATAATgtgagtcaccctccaccagaggaaataaacctaggaaactgtgcaggggt Alignment from Spaln_nt2Genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT ttgcccatctcttgcagttaacactgagcctctaatctgtgtttctgcagTCAATGTTGGTGGTTACATTCTGGCTGTGTTAGACCGAAACCTATCTGAGAACATCTCCCGTGTATTATACCCCAATGATAATgtgagtcaccctccaccagaggaaataaacctaggaaactgtgcaggggt Alignment from Pairagon TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT ttgcccatctcttgcagttaacactgagcctctaatctgtgtttctgcagTCAATGTTGGTGGTTACATTCTGGCTGTGTTAGACCGAAACCTATCTGAGAACATCTCCCGTGTATTATACCCCAATGATAATgtgagtcaccctccaccagaggaaataaacctaggaaactgtgcaggggt Alignment from Exonerate_protein2genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT ttgcccatctcttgcagttaacactgagcctctaatctgtgtttctgcagTCAATGTTGGTGGTTACATTCTGGCTGTGTTAGACCGAAACCTATCTGAGAACATCTCCCGTGTATTATACCCCAATGATAATgtgagtcaccctccaccagaggaaataaacctaggaaactgtgcaggggt Alignment from Exonerate_coding2genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT ttgcccatctcttgcagttaacactgagcctctaatctgtgtttctgcagTCAATGTTGGTGGTTACATTCTGGCTGTGTTAGACCGAAACCTATCTGAGAACATCTCCCGTGTATTATACCCCAATGATAATgtgagtcaccctccaccagaggaaataaacctaggaaactgtgcaggggt Alignment from GeneWise TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT ttgcccatctcttgcagttaacactgagcctctaatctgtgtttctgcagTCAATGTTGGTGGTTACATTCTGGCTGTGTTAGACCGAAACCTATCTGAGAACATCTCCCGTGTATTATACCCCAATGATAATgtgagtcaccctccaccagaggaaataaacctaggaaactgtgcaggggt #### Pygm_ID1689_13 --> 0 - 0 Original Alignment CGCATTGGTGAGGACTACATCTCAGACCTGGACCAGCTGCGCAAGCTGCTCTCCTATGTGGATGATGAAGCCTTTATCCGTGATGTGGCCAAAGTGAAACAG attctaggctgggtttgggattctagtactgagctgcctccctgcctcagCGTATTGGTCAGGACTATGTCTCTGACTTAGACCAGCCTCACAAGCTGCTGTCCTATGTACATGATGAAGCCTTCATCCATGAAGTGGCCAGAGTGAAGCGGgtagacggtccctagtgggagagataggtctctgtaactctttatgtttg Alignment from CESAR CGCATTGGTGAGGACTACATCTCAGACCTGGACCAGCTGCGCAAGCTGCTCTCCTATGTGGATGATGAAGCCTTTATCCGTGATGTGGCCAAAGTGAAACAG attctaggctgggtttgggattctagtactgagctgcctccctgcctcagCGTATTGGTCAGGACTATGTCTCTGACTTAGACCAGCCTCACAAGCTGCTGTCCTATGTACATGATGAAGCCTTCATCCATGAAGTGGCCAGAGTGAAGCGGgtagacggtccctagtgggagagataggtctctgtaactctttatgtttg Alignment from Spaln_aa2Genome CGCATTGGTGAGGACTACATCTCAGACCTGGACCAGCTGCGCAAGCTGCTCTCCTATGTGGATGATGAAGCCTTTATCCGTGATGTGGCCAAAGTGAAACAG attctaggctgggtttgggattctagtactgagctgcctccctgcctcagCGTATTGGTCAGGACTATGTCTCTGACTTAGACCAGCCTCACAAGCTGCTGTCCTATGTACATGATGAAGCCTTCATCCATGAAGTGGCCAGAGTGAAGCGGgtagacggtccctagtgggagagataggtctctgtaactctttatgtttg Alignment from Spaln_nt2Genome CGCATTGGTGAGGACTACATCTCAGACCTGGACCAGCTGCGCAAGCTGCTCTCCTATGTGGATGATGAAGCCTTTATCCGTGATGTGGCCAAAGTGAAACAG attctaggctgggtttgggattctagtactgagctgcctccctgcctcagCGTATTGGTCAGGACTATGTCTCTGACTTAGACCAGCCTCACAAGCTGCTGTCCTATGTACATGATGAAGCCTTCATCCATGAAGTGGCCAGAGTGAAGCGGgtagacggtccctagtgggagagataggtctctgtaactctttatgtttg Alignment from Pairagon CGCATTGGTGAGGACTACATCTCAGACCTGGACCAGCTGCGCAAGCTGCTCTCCTATGTGGATGATGAAGCCTTTATCCGTGATGTGGCCAAAGTGAAACAG attctaggctgggtttgggattctagtactgagctgcctccctgcctcagCGTATTGGTCAGGACTATGTCTCTGACTTAGACCAGCCTCACAAGCTGCTGTCCTATGTACATGATGAAGCCTTCATCCATGAAGTGGCCAGAGTGAAGCGGgtagacggtccctagtgggagagataggtctctgtaactctttatgtttg Alignment from Exonerate_protein2genome CGCATTGGTGAGGACTACATCTCAGACCTGGACCAGCTGCGCAAGCTGCTCTCCTATGTGGATGATGAAGCCTTTATCCGTGATGTGGCCAAAGTGAAACAG attctaggctgggtttgggattctagtactgagctgcctccctgcctcagCGTATTGGTCAGGACTATGTCTCTGACTTAGACCAGCCTCACAAGCTGCTGTCCTATGTACATGATGAAGCCTTCATCCATGAAGTGGCCAGAGTGAAGCGGgtagacggtccctagtgggagagataggtctctgtaactctttatgtttg Alignment from Exonerate_coding2genome CGCATTGGTGAGGACTACATCTCAGACCTGGACCAGCTGCGCAAGCTGCTCTCCTATGTGGATGATGAAGCCTTTATCCGTGATGTGGCCAAAGTGAAACAG attctaggctgggtttgggattctagtactgagctgcctccctgcctcagCGTATTGGTCAGGACTATGTCTCTGACTTAGACCAGCCTCACAAGCTGCTGTCCTATGTACATGATGAAGCCTTCATCCATGAAGTGGCCAGAGTGAAGCGGgtagacggtccctagtgggagagataggtctctgtaactctttatgtttg Alignment from GeneWise CGCATTGGTGAGGACTACATCTCAGACCTGGACCAGCTGCGCAAGCTGCTCTCCTATGTGGATGATGAAGCCTTTATCCGTGATGTGGCCAAAGTGAAACAG attctaggctgggtttgggattctagtactgagctgcctccctgcctcagCGTATTGGTCAGGACTATGTCTCTGACTTAGACCAGCCTCACAAGCTGCTGTCCTATGTACATGATGAAGCCTTCATCCATGAAGTGGCCAGAGTGAAGCGGgtagacggtccctagtgggagagataggtctctgtaactctttatgtttg #### Pygm_ID1690_14 --> 0 - 1 Original Alignment GAAAACAAGTTGAAGTTCTCTGCATACCTCGAGAGGGAATACAAAGTCCACATCAACCCCAACTCGCTCTTTGACGTCCAGGTGAAAAGGATTCATGAGTACAAGCGGCAGCTCCTCAACTGCCTGCACATCATCACCTTGTATAACc cctgggagatgtttgccctttcacccctggtacctgtcttcttgctctagGAAAACAAGTTAAAGTTCTCTGCATACCTTGAGAGTGAGTATAAAGTTCATATTAACCCCAATTCTCTCTTTGATGTCCAGGTAAAGAGC---CCTGAGTGC------CAACTGCTCAATTGCCTGCAAATCATTACCTTGTATAACcgtgagttgcttagaattaccaacaacctggcattgcatgtgtagtcaacc Alignment from CESAR GAAAACAAGTTGAAGTTCTCTGCATACCTCGAGAGGGAATACAAAGTCCACATCAACCCCAACTCGCTCTTTGACGTCCAGGTGAAAAGGATTCATGAGTACAAGCGGCAGCTCCTCAACTGCCTGCACATCATCACCTTGTATAACc cctgggagatgtttgccctttcacccctggtacctgtcttcttgctctagGAAAACAAGTTAAAGTTCTCTGCATACCTTGAGAGTGAGTATAAAGTTCATATTAACCCCAATTCTCTCTTTGATGTCCAGGTAAAGAGC---CCTGAGTGC------CAACTGCTCAATTGCCTGCAAATCATTACCTTGTATAACcgtgagttgcttagaattaccaacaacctggcattgcatgtgtagtcaacc Alignment from Spaln_aa2Genome GAAAACAAGTTGAAGTTCTCTGCATACCTCGAGAGGGAATACAAAGTCCACATCAACCCCAACTCGCTCTTTGACGTCCAGGTGAAAAGGATTCATGAGTACAAGCGGCAGCTCCTCAACTGCCTGCACATCATCACCTTGTATAACC cctgggagatgtttgccctttcacccctggtacctgtcttcttgctctagGAAAACAAGTTAAAGTTCTCTGCATACCTTGAGAGTGAGTATAAAGTTCATATTAACCCCAATTCTCTCTTTGATGTCCAGGTAAAGAGCCCT---------GAGTGCCAACTGCTCAATTGCCTGCAAATCATTACCTTGTATAACCgtgagttgcttagaattaccaacaacctggcattgcatgtgtagtcaacc Alignment from Spaln_nt2Genome GAAAACAAGTTGAAGTTCTCTGCATACCTCGAGAGGGAATACAAAGTCCACATCAACCCCAACTCGCTCTTTGACGTCCAGGTGAAAAGGATTCATGAGTACAAGCGGCAGCTCCTCAACTGCCTGCACATCATCACCTTGTATAACC cctgggagatgtttgccctttcacccctggtacctgtcttcttgctctagGAAAACAAGTTAAAGTTCTCTGCATACCTTGAGAGTGAGTATAAAGTTCATATTAACCCCAATTCTCTCTTTGATGTCCAGGT---AAAGAGCCCTGAGT------GCCAACTGCTCAATTGCCTGCAAATCATTACCTTGTATAACCgtgagttgcttagaattaccaacaacctggcattgcatgtgtagtcaacc Alignment from Pairagon GAAAACAAGTTGAAGTTCTCTGCATACCTCGAGAGGGAATACAAAGTCCACATCAACCCCAACTCGCTCTTTGACGTCCAGGTGAAAAGGATTCATGAGTACAAGCGGCAGCTCCTCAACTGCCTGCACATCATCACCTTGTATAACC cctgggagatgtttgccctttcacccctggtacctgtcttcttgctctagGAAAACAAGTTAAAGTTCTCTGCATACCTTGAGAGTGAGTATAAAGTTCATATTAACCCCAATTCTCTCTTTGATGTCCAGGTAAAGAG---CCCTGAGTGC------CAACTGCTCAATTGCCTGCAAATCATTACCTTGTATAACCgtgagttgcttagaattaccaacaacctggcattgcatgtgtagtcaacc Alignment from Exonerate_protein2genome GAAAACAAGTTGAAGTTCTCTGCATACCTCGAGAGGGAATACAAAGTCCACATCAACCCCAACTCGCTCTTTGACGTCCAGGTGAAAAGGATTCATGAGTACAAGCGGCAGCTCCTCAACTGCCTGCACATCATCACCTTGTATAACC cctgggagatgtttgccctttcacccctggtacctgtcttcttgctctagGAAAACAAGTTAAAGTTCTCTGCATACCTTGAGAGTGAGTATAAAGTTCATATTAACCCCAATTCTCTCTTTGATGTCCAGGTAAAG---------AGCCCTGAGTGCCAACTGCTCAATTGCCTGCAAATCATTACCTTGTATAACCgtgagttgcttagaattaccaacaacctggcattgcatgtgtagtcaacc Alignment from Exonerate_coding2genome GAAAACAAGTTGAAGTTCTCTGCATACCTCGAGAGGGAATACAAAGTCCACATCAACCCCAACTCGCTCTTTGACGTCCAGGTGAAAAGGATTCATGAGTACAAGCGGCAGCTCCTCAACTGCCTGCACATCATCACCTTGTATAACC cctgggagatgtttgccctttcacccctggtacctgtcttcttgctctagGAAAACAAGTTAAAGTTCTCTGCATACCTTGAGAGTGAGTATAAAGTTCATATTAACCCCAATTCTCTCTTTGATGTCCAGGTAAAG---------AGCCCTGAGTGCCAACTGCTCAATTGCCTGCAAATCATTACCTTGTATAACCgtgagttgcttagaattaccaacaacctggcattgcatgtgtagtcaacc Alignment from GeneWise GAAAACAAGTTGAAGTTCTCTGCATACCTCGAGAGGGAATACAAAGTCCACATCAACCCCAACTCGCTCTTTGACGTCCAGGTGAAAAGGATTCATGAGTACAAGCGGCAGCTCCTCAACTGCCTGCACATCATCACCTTGTATAACC cctgggagatgtttgccctttcacccctggtacctgtcttcttgctctagGAAAACAAGTTAAAGTTCTCTGCATACCTTGAGAGTGAGTATAAAGTTCATATTAACCCCAATTCTCTCTTTGATGTCCAGGTAAAG---------AGCCCTGAGTGCCAACTGCTCAATTGCCTGCAAATCATTACCTTGTATAACCgtgagttgcttagaattaccaacaacctggcattgcatgtgtagtcaacc #### Pygm_ID1693_17 --> 2 - 2 Original Alignment ttATTCCCGCCGCCGACCTCTCAGAGCAGATCTCCACC---------GCGGGCACCGAGGCCTCGGGCACTGGCAACATGAAGTTCATGCTCAATGGGGCTCTGACCATCGGCACCATGGACGGTGCCAACGTGGAGATGGCAGAGGAGGCGGGGGAGGAGAACTTC---------------TTCATCTTCGGCATGCGAGTGGAGGACGTGGAAAGGCTGGACCAGAGAgg gattatgtctaccttgatcatgtctgcaccatcctcctatctcccgctagttATTCCTGCA---GATCTATCAGAACAGATCTCCACTGCTGGCACTGCTGGCACTGAGGCCCCAGGTACAGGCAATATGAGGTTCATGCTTAATGGGGCTCTGACCATTGGGACCATGGACGGGGCCAATGTAAAAATGTCAGAGGAGGTCGGGGAAAAGAACTTGGAAAAGAACTTCTTCATCGCCTTTGGTATGCGGGTGGAGGATGTGGAAAGGCTGGATCAGAGAgggtaagtgggtaggctgccagactggcgagagctttttgggtcttttaagg Alignment from CESAR ttATTCCCGCCGCCGACCTCTCAGAGCAGATCTCCACCGCGGGCACC---------GAGGCCTCGGGCACTGGCAACATGAAGTTCATGCTCAATGGGGCTCTGACCATCGGCACCATGGACGGTGCCAACGTGGAGATGGCAGAGGAGGCGGGGGAGGAGAAC------------TTCTTCATC---TTCGGCATGCGAGTGGAGGACGTGGAAAGGCTGGACCAGAGAgg gattatgtctaccttgatcatgtctgcaccatcctcctatctcccgctagttATTCCT---GCAGATCTATCAGAACAGATCTCCACTGCTGGCACTGCTGGCACTGAGGCCCCAGGTACAGGCAATATGAGGTTCATGCTTAATGGGGCTCTGACCATTGGGACCATGGACGGGGCCAATGTAAAAATGTCAGAGGAGGTCGGGGAAAAGAACTTGGAAAAGAACTTCTTCATCGCCTTTGGTATGCGGGTGGAGGATGTGGAAAGGCTGGATCAGAGAgggtaagtgggtaggctgccagactggcgagagctttttgggtcttttaagg Alignment from Spaln_aa2Genome TTATTCCCGCCGCCGACCTCTCAGAGCAGATCTCCACC---------GCGGGCACCGAGGCCTCGGGCACTGGCAACATGAAGTTCATGCTCAATGGGGCTCTGACCATCGGCACCATGGACGGTGCCAACGTGGAGATGGCAGAGGAGGCGGGG------------GAGGAGAACTTCTTCATC---TTCGGCATGCGAGTGGAGGACGTGGAAAGGCTGGACCAGAGAGG gattatgtctaccttgatcatgtctgcaccatcctcctatctcccgctagTTATTCCT---GCAGATCTATCAGAACAGATCTCCACTGCTGGCACTGCTGGCACTGAGGCCCCAGGTACAGGCAATATGAGGTTCATGCTTAATGGGGCTCTGACCATTGGGACCATGGACGGGGCCAATGTAAAAATGTCAGAGGAGGTCGGGGAAAAGAACTTGGAAAAGAACTTCTTCATCGCCTTTGGTATGCGGGTGGAGGATGTGGAAAGGCTGGATCAGAGAGGgtaagtgggtaggctgccagactggcgagagctttttgggtcttttaagg Alignment from Spaln_nt2Genome TTATTCCCGCCGCCGACCTCTCAGAGCAGATCTCCACCGCGGGCACCG---------AGGCCTCGGGCACTGGCAACATGAAGTTCATGCTCAATGGGGCTCTGACCATCGGCACCATGGACGGTGCCAACGTGGAGATGGCAGAGGAGGCGGGGGA---------GGA---GAACTTCTTCATC---TTCGGCATGCGAGTGGAGGACGTGGAAAGGCTGGACCAGAGAGG gattatgtctaccttgatcatgtctgcaccatcctcctatctcccgctagTTATTC---CTGCAGATCTATCAGAACAGATCTCCACTGCTGGCACTGCTGGCACTGAGGCCCCAGGTACAGGCAATATGAGGTTCATGCTTAATGGGGCTCTGACCATTGGGACCATGGACGGGGCCAATGTAAAAATGTCAGAGGAGGTCGGGGAAAAGAACTTGGAAAAGAACTTCTTCATCGCCTTTGGTATGCGGGTGGAGGATGTGGAAAGGCTGGATCAGAGAGGgtaagtgggtaggctgccagactggcgagagctttttgggtcttttaagg Alignment from Pairagon TTATTCCCGCCGCCGACCTCTCAGAGCAGATCTC---------CACCGCGGGCACCGAGGCCTCGGGCACTGGCAACATGAAGTTCATGCTCAATGGGGCTCTGACCATCGGCACCATGGACGGTGCCAACGTGGAGATGGCAGAGGAGGCGGG------------GGAGGAGAACTTCTTCAT---CTTCGGCATGCGAGTGGAGGACGTGGAAAGGCTGGACCAGAGAGG gattatgtctaccttgatcatgtctgcaccatcctcctatctcccgctagTTATTC---CTGCAGATCTATCAGAACAGATCTCCACTGCTGGCACTGCTGGCACTGAGGCCCCAGGTACAGGCAATATGAGGTTCATGCTTAATGGGGCTCTGACCATTGGGACCATGGACGGGGCCAATGTAAAAATGTCAGAGGAGGTCGGGGAAAAGAACTTGGAAAAGAACTTCTTCATCGCCTTTGGTATGCGGGTGGAGGATGTGGAAAGGCTGGATCAGAGAGGgtaagtgggtaggctgccagactggcgagagctttttgggtcttttaagg Alignment from Exonerate_protein2genome TTATTCCCGCCGCCGACCTCTCAGAGCAGATCTCC---------ACCGCGGGCACCGAGGCCTCGGGCACTGGCAACATGAAGTTCATGCTCAATGGGGCTCTGACCATCGGCACCATGGACGGTGCCAACGTGGAGATGGCAGAGGAGGCGGGG------------GAGGAGAACTTCTTCATC---TTCGGCATGCGAGTGGAGGACGTGGAAAGGCTGGACCAGAGAGG gattatgtctaccttgatcatgtctgcaccatcctcctatctcccgctagTTATTCCT---GCAGATCTATCAGAACAGATCTCCACTGCTGGCACTGCTGGCACTGAGGCCCCAGGTACAGGCAATATGAGGTTCATGCTTAATGGGGCTCTGACCATTGGGACCATGGACGGGGCCAATGTAAAAATGTCAGAGGAGGTCGGGGAAAAGAACTTGGAAAAGAACTTCTTCATCGCCTTTGGTATGCGGGTGGAGGATGTGGAAAGGCTGGATCAGAGAGGgtaagtgggtaggctgccagactggcgagagctttttgggtcttttaagg Alignment from Exonerate_coding2genome TTATTCCCGCCGCCGACCTCTCAGAGCAGATCTCC---------ACCGCGGGCACCGAGGCCTCGGGCACTGGCAACATGAAGTTCATGCTCAATGGGGCTCTGACCATCGGCACCATGGACGGTGCCAACGTGGAGATGGCAGAGGAGGCGGGG------------GAGGAGAACTTCTTCATC---TTCGGCATGCGAGTGGAGGACGTGGAAAGGCTGGACCAGAGAGG gattatgtctaccttgatcatgtctgcaccatcctcctatctcccgctagTTATTCCT---GCAGATCTATCAGAACAGATCTCCACTGCTGGCACTGCTGGCACTGAGGCCCCAGGTACAGGCAATATGAGGTTCATGCTTAATGGGGCTCTGACCATTGGGACCATGGACGGGGCCAATGTAAAAATGTCAGAGGAGGTCGGGGAAAAGAACTTGGAAAAGAACTTCTTCATCGCCTTTGGTATGCGGGTGGAGGATGTGGAAAGGCTGGATCAGAGAGGgtaagtgggtaggctgccagactggcgagagctttttgggtcttttaagg Alignment from GeneWise TTATTCCCGCCGCCGACCTCTCAGAGCAGATCTCCACCGCGGGCACC---------GAGGCCTCGGGCACTGGCAACATGAAGTTCATGCTCAATGGGGCTCTGACCATCGGCACCATGGACGGTGCCAACGTGGAGATGGCAGAGGAGGCGGGG------------GAGGAGAACTTCTTCATC---TTCGGCATGCGAGTGGAGGACGTGGAAAGGCTGGACCAGAGAGG gattatgtctaccttgatcatgtctgcaccatcctcctatctcccgctagTTATTCCTGCA---GATCTATCAGAACAGATCTCCACTGCTGGCACTGCTGGCACTGAGGCCCCAGGTACAGGCAATATGAGGTTCATGCTTAATGGGGCTCTGACCATTGGGACCATGGACGGGGCCAATGTAAAAATGTCAGAGGAGGTCGGGGAAAAGAACTTGGAAAAGAACTTCTTCATCGCCTTTGGTATGCGGGTGGAGGATGTGGAAAGGCTGGATCAGAGAGGgtaagtgggtaggctgccagactggcgagagctttttgggtcttttaagg #### Pyroxd2_ID8596_12 --> 2 - 2 Original Alignment tgGCTGTGGACAGGCTGCCAAACTTCCAGGCGGCCCCTAATGCTCCCGGGGACCAGCCCCAAGGTCACCATCAGTGTTCCATCCACCTGAACTGTGAAGACACCCTGCTCCTCCACCAGGCCTTTGAAGATGCCAAGGGTGGCCTGCCTTCCCAAaa caggcagctgggctgttgggcaacctaataatgatggtgtttctttttagtgGCTGTAGACAGGCTGCCAAACTTTCAAGCAGCCCCGAATGCTCCTGGGGATCATCCCCAAGGTCACCACCAGTGTTCTATCCACCTGAACTGTGAAGATACTTTTCTCCTCCATCAAGCCTTTCAAGATACCAAAGGTGGCCTACCATCCCAGaagtgagggagataaggctcgtattactcagtatattccctatgcgttcaag Alignment from CESAR tgGCTGTGGACAGGCTGCCAAACTTCCAGGCGGCCCCTAATGCTCCCGGGGACCAGCCCCAAGGTCACCATCAGTGTTCCATCCACCTGAACTGTGAAGACACCCTGCTCCTCCACCAGGCCTTTGAAGATGCCAAGGGTGGCCTGCCTTCCCAAaa caggcagctgggctgttgggcaacctaataatgatggtgtttctttttagtgGCTGTAGACAGGCTGCCAAACTTTCAAGCAGCCCCGAATGCTCCTGGGGATCATCCCCAAGGTCACCACCAGTGTTCTATCCACCTGAACTGTGAAGATACTTTTCTCCTCCATCAAGCCTTTCAAGATACCAAAGGTGGCCTACCATCCCAGaagtgagggagataaggctcgtattactcagtatattccctatgcgttcaag Alignment from Spaln_aa2Genome TGGCTGTGGACAGGCTGCCAAACTTCCAGGCGGCCCCTAATGCTCCCGGGGACCAGCCCCAAGGTCACCATCAGTGTTCCATCCACCTGAACTGTGAAGACACCCTGCTCCTCCACCAGGCCTTTGAAGATGCCAAGGGTGGCCTGCCTTCCCAAAA caggcagctgggctgttgggcaacctaataatgatggtgtttctttttagTGGCTGTAGACAGGCTGCCAAACTTTCAAGCAGCCCCGAATGCTCCTGGGGATCATCCCCAAGGTCACCACCAGTGTTCTATCCACCTGAACTGTGAAGATACTTTTCTCCTCCATCAAGCCTTTCAAGATACCAAAGGTGGCCTACCATCCCAGAAgtgagggagataaggctcgtattactcagtatattccctatgcgttcaag Alignment from Spaln_nt2Genome TGGCTGTGGACAGGCTGCCAAACTTCCAGGCGGCCCCTAATGCTCCCGGGGACCAGCCCCAAGGTCACCATCAGTGTTCCATCCACCTGAACTGTGAAGACACCCTGCTCCTCCACCAGGCCTTTGAAGATGCCAAGGGTGGCCTGCCTTCCCAAAA caggcagctgggctgttgggcaacctaataatgatggtgtttctttttagTGGCTGTAGACAGGCTGCCAAACTTTCAAGCAGCCCCGAATGCTCCTGGGGATCATCCCCAAGGTCACCACCAGTGTTCTATCCACCTGAACTGTGAAGATACTTTTCTCCTCCATCAAGCCTTTCAAGATACCAAAGGTGGCCTACCATCCCAGAAgtgagggagataaggctcgtattactcagtatattccctatgcgttcaag Alignment from Pairagon TGGCTGTGGACAGGCTGCCAAACTTCCAGGCGGCCCCTAATGCTCCCGGGGACCAGCCCCAAGGTCACCATCAGTGTTCCATCCACCTGAACTGTGAAGACACCCTGCTCCTCCACCAGGCCTTTGAAGATGCCAAGGGTGGCCTGCCTTCCCAAAA caggcagctgggctgttgggcaacctaataatgatggtgtttctttttagTGGCTGTAGACAGGCTGCCAAACTTTCAAGCAGCCCCGAATGCTCCTGGGGATCATCCCCAAGGTCACCACCAGTGTTCTATCCACCTGAACTGTGAAGATACTTTTCTCCTCCATCAAGCCTTTCAAGATACCAAAGGTGGCCTACCATCCCAGAAgtgagggagataaggctcgtattactcagtatattccctatgcgttcaag Alignment from Exonerate_protein2genome TGGCTGTGGACAGGCTGCCAAACTTCCAGGCGGCCCCTAATGCTCCCGGGGACCAGCCCCAAGGTCACCATCAGTGTTCCATCCACCTGAACTGTGAAGACACCCTGCTCCTCCACCAGGCCTTTGAAGATGCCAAGGGTGGCCTGCCTTCCCAAAA caggcagctgggctgttgggcaacctaataatgatggtgtttctttttagTGGCTGTAGACAGGCTGCCAAACTTTCAAGCAGCCCCGAATGCTCCTGGGGATCATCCCCAAGGTCACCACCAGTGTTCTATCCACCTGAACTGTGAAGATACTTTTCTCCTCCATCAAGCCTTTCAAGATACCAAAGGTGGCCTACCATCCCAGAAgtgagggagataaggctcgtattactcagtatattccctatgcgttcaag Alignment from Exonerate_coding2genome TGGCTGTGGACAGGCTGCCAAACTTCCAGGCGGCCCCTAATGCTCCCGGGGACCAGCCCCAAGGTCACCATCAGTGTTCCATCCACCTGAACTGTGAAGACACCCTGCTCCTCCACCAGGCCTTTGAAGATGCCAAGGGTGGCCTGCCTTCCCAAAA caggcagctgggctgttgggcaacctaataatgatggtgtttctttttagTGGCTGTAGACAGGCTGCCAAACTTTCAAGCAGCCCCGAATGCTCCTGGGGATCATCCCCAAGGTCACCACCAGTGTTCTATCCACCTGAACTGTGAAGATACTTTTCTCCTCCATCAAGCCTTTCAAGATACCAAAGGTGGCCTACCATCCCAGAAgtgagggagataaggctcgtattactcagtatattccctatgcgttcaag Alignment from GeneWise TGGCTGTGGACAGGCTGCCAAACTTCCAGGCGGCCCCTAATGCTCCCGGGGACCAGCCCCAAGGTCACCATCAGTGTTCCATCCACCTGAACTGTGAAGACACCCTGCTCCTCCACCAGGCCTTTGAAGATGCCAAGGGTGGCCTGCCTTCCCAAAA caggcagctgggctgttgggcaacctaataatgatggtgtttctttttagTGGCTGTAGACAGGCTGCCAAACTTTCAAGCAGCCCCGAATGCTCCTGGGGATCATCCCCAAGGTCACCACCAGTGTTCTATCCACCTGAACTGTGAAGATACTTTTCTCCTCCATCAAGCCTTTCAAGATACCAAAGGTGGCCTACCATCCCAGAAgtgagggagataaggctcgtattactcagtatattccctatgcgttcaag #### Pyroxd2_ID8600_8 --> 0 - 2 Original Alignment GTGCTGGACCAACGGTTTGAGTCTGAGCCTCTGAAGGCAACTCTGGCAACAGATGCTGTGATTGGAGCAATGACGAGTCCCCACACTCCGGGGAGTgg cacccagtgtaacatgggtgctatactaacatatagttctctcttcaaagGTGTTAGACCAACGATTCGAGGCCGAGCCCCTGAAGGCAACACTAGCAACAGATTCAGTGATTGGAGCAATGACAAGCCCCCATACTCCTGAGAGTgggtaggttggcctcatgtgtattcctacatcagaggtataaagaccctaca Alignment from CESAR GTGCTGGACCAACGGTTTGAGTCTGAGCCTCTGAAGGCAACTCTGGCAACAGATGCTGTGATTGGAGCAATGACGAGTCCCCACACTCCGGGGAGTgg cacccagtgtaacatgggtgctatactaacatatagttctctcttcaaagGTGTTAGACCAACGATTCGAGGCCGAGCCCCTGAAGGCAACACTAGCAACAGATTCAGTGATTGGAGCAATGACAAGCCCCCATACTCCTGAGAGTgggtaggttggcctcatgtgtattcctacatcagaggtataaagaccctaca Alignment from Spaln_aa2Genome GTGCTGGACCAACGGTTTGAGTCTGAGCCTCTGAAGGCAACTCTGGCAACAGATGCTGTGATTGGAGCAATGACGAGTCCCCACACTCCGGGGAGTGG cacccagtgtaacatgggtgctatactaacatatagttctctcttcaaagGTGTTAGACCAACGATTCGAGGCCGAGCCCCTGAAGGCAACACTAGCAACAGATTCAGTGATTGGAGCAATGACAAGCCCCCATACTCCTGAGAGTGGgtaggttggcctcatgtgtattcctacatcagaggtataaagaccctaca Alignment from Spaln_nt2Genome GTGCTGGACCAACGGTTTGAGTCTGAGCCTCTGAAGGCAACTCTGGCAACAGATGCTGTGATTGGAGCAATGACGAGTCCCCACACTCCGGGGAGTGG cacccagtgtaacatgggtgctatactaacatatagttctctcttcaaagGTGTTAGACCAACGATTCGAGGCCGAGCCCCTGAAGGCAACACTAGCAACAGATTCAGTGATTGGAGCAATGACAAGCCCCCATACTCCTGAGAGTGGgtaggttggcctcatgtgtattcctacatcagaggtataaagaccctaca Alignment from Pairagon GTGCTGGACCAACGGTTTGAGTCTGAGCCTCTGAAGGCAACTCTGGCAACAGATGCTGTGATTGGAGCAATGACGAGTCCCCACACTCCGGGGAGTGG cacccagtgtaacatgggtgctatactaacatatagttctctcttcaaagGTGTTAGACCAACGATTCGAGGCCGAGCCCCTGAAGGCAACACTAGCAACAGATTCAGTGATTGGAGCAATGACAAGCCCCCATACTCCTGAGAGTGGgtaggttggcctcatgtgtattcctacatcagaggtataaagaccctaca Alignment from Exonerate_protein2genome GTGCTGGACCAACGGTTTGAGTCTGAGCCTCTGAAGGCAACTCTGGCAACAGATGCTGTGATTGGAGCAATGACGAGTCCCCACACTCCGGGGAGTGG cacccagtgtaacatgggtgctatactaacatatagttctctcttcaaagGTGTTAGACCAACGATTCGAGGCCGAGCCCCTGAAGGCAACACTAGCAACAGATTCAGTGATTGGAGCAATGACAAGCCCCCATACTCCTGAGAGTGGgtaggttggcctcatgtgtattcctacatcagaggtataaagaccctaca Alignment from Exonerate_coding2genome GTGCTGGACCAACGGTTTGAGTCTGAGCCTCTGAAGGCAACTCTGGCAACAGATGCTGTGATTGGAGCAATGACGAGTCCCCACACTCCGGGGAGTGG cacccagtgtaacatgggtgctatactaacatatagttctctcttcaaagGTGTTAGACCAACGATTCGAGGCCGAGCCCCTGAAGGCAACACTAGCAACAGATTCAGTGATTGGAGCAATGACAAGCCCCCATACTCCTGAGAGTGGgtaggttggcctcatgtgtattcctacatcagaggtataaagaccctaca Alignment from GeneWise GTGCTGGACCAACGGTTTGAGTCTGAGCCTCTGAAGGCAACTCTGGCAACAGATGCTGTGATTGGAGCAATGACGAGTCCCCACACTCCGGGGAGTGG cacccagtgtaacatgggtgctatactaacatatagttctctcttcaaagGTGTTAGACCAACGATTCGAGGCCGAGCCCCTGAAGGCAACACTAGCAACAGATTCAGTGATTGGAGCAATGACAAGCCCCCATACTCCTGAGAGTGGgtaggttggcctcatgtgtattcctacatcagaggtataaagaccctaca #### Rab11fip2_ID13108_2 --> 1 - 1 Original Alignment gTGGTTTAGATTAGAATCCAAACAAGGAAAAAGAATAAAAAACAGGGGTGAGATAAAGGTCAATATTCAATTTATG---AGGAACAACATGACAGCAAGCATGTTTGACTTGTCAATGAAGGACAAGACGAGATCACCTTTTGCAAAATTAAAAGATAAGATGAAAGGGAGGAAAAGCGACGGGGTGTTTTCTGATACGTCCTCTGCCATCGTTCCGAGCACTCACATGCCTGATGCCAATCCTGAGTTTTCAAGTGGTGAAATGCAGATGAAATCCAAACCAAAAAAGCCTTTTCTTTTGGGTCCTCAGCGGCTCTCTTCTGCCCATTCGATGTCTGATTTAACTGGGTCCCACTTATCTTCTGAGAAGCTGAAGTCCAGCACTGTGGGTCCAACACATCTTCTCAGTCGCCAGATAGATTCCTTTGGAGTTGTTCCAGAAAGTg ctccttactgtcattatttgctacatgtcaaatattcttgtcccttttaggTGGTACAGATTGGAATCTACACAAGGAAAAAGAATAAAAAACAGGGGTGAAATAGAGGTCAATATTCAATACATGAGAAGGAACAATATGACAGCTAGTATGTTTGACTTATCAATGAAGGACAAGACAAGATCAGCTTTTGCAAAATTAAGAGATAAGATTAAGGGAAGAAAGAGTGATGGGGTGTTTTCAGAAACTTCG---GCGATCATACCAAGCACTCACATCCCTGATCCAAATCCTGAGTTTTCCAGTGATGAAATGCAAATGGAATCCTCAGCAAAAAAGCCTTTTCTTTTGGGTCCACAGCAACTCTCTTCTGCCCATTCAATGACTGAATTGACAGGGTCC------CCATCAGAGATGCTGAAATCAAGCACTGTAGGCCCAACACATCTTCTAAGTTGCCAGATAGATTCCTATGGAGTTGTTCCCAAAAGTggtgagtggatcataaactatgttttccacacttatagtgtatacaagcct Alignment from CESAR gTGGTTTAGATTAGAATCCAAACAAGGAAAAAGAATAAAAAACAGGGGTGAGATAAAGGTCAATATTCAATTTATG---AGGAACAACATGACAGCAAGCATGTTTGACTTGTCAATGAAGGACAAGACGAGATCACCTTTTGCAAAATTAAAAGATAAGATGAAAGGGAGGAAAAGCGACGGGGTGTTTTCTGATACGTCCTCTGCCATCGTTCCGAGCACTCACATGCCTGATGCCAATCCTGAGTTTTCAAGTGGTGAAATGCAGATGAAATCCAAACCAAAAAAGCCTTTTCTTTTGGGTCCTCAGCGGCTCTCTTCTGCCCATTCGATGTCTGATTTAACTGGGTCCCACTTATCTTCTGAGAAGCTGAAGTCCAGCACTGTGGGTCCAACACATCTTCTCAGTCGCCAGATAGATTCCTTTGGAGTTGTTCCAGAAAGTg ctccttactgtcattatttgctacatgtcaaatattcttgtcccttttaggTGGTACAGATTGGAATCTACACAAGGAAAAAGAATAAAAAACAGGGGTGAAATAGAGGTCAATATTCAATACATGAGAAGGAACAATATGACAGCTAGTATGTTTGACTTATCAATGAAGGACAAGACAAGATCAGCTTTTGCAAAATTAAGAGATAAGATTAAGGGAAGAAAGAGTGATGGGGTGTTTTCAGAAACT---TCGGCGATCATACCAAGCACTCACATCCCTGATCCAAATCCTGAGTTTTCCAGTGATGAAATGCAAATGGAATCCTCAGCAAAAAAGCCTTTTCTTTTGGGTCCACAGCAACTCTCTTCTGCCCATTCAATGACTGAATTGACAGGGTCC------CCATCAGAGATGCTGAAATCAAGCACTGTAGGCCCAACACATCTTCTAAGTTGCCAGATAGATTCCTATGGAGTTGTTCCCAAAAGTggtgagtggatcataaactatgttttccacacttatagtgtatacaagcct Alignment from Spaln_aa2Genome GTGGTTTAGATTAGAATCCAAACAAGGAAAAAGAATAAAAAACAGGGGTGAGATAAAGGTCAATATTCAATTTATG---AGGAACAACATGACAGCAAGCATGTTTGACTTGTCAATGAAGGACAAGACGAGATCACCTTTTGCAAAATTAAAAGATAAGATGAAAGGGAGGAAAAGCGACGGGGTGTTTTCTGATACGTCCTCTGCCATCGTTCCGAGCACTCACATGCCTGATGCCAATCCTGAGTTTTCAAGTGGTGAAATGCAGATGAAATCCAAACCAAAAAAGCCTTTTCTTTTGGGTCCTCAGCGGCTCTCTTCTGCCCATTCGATGTCTGATTTAACTGGGTCCCACTTATCTTCTGAGAAGCTGAAGTCCAGCACTGTGGGTCCAACACATCTTCTCAGTCGCCAGATAGATTCCTTTGGAGTTGTTCCAGAAAGTG ctccttactgtcattatttgctacatgtcaaatattcttgtcccttttagGTGGTACAGATTGGAATCTACACAAGGAAAAAGAATAAAAAACAGGGGTGAAATAGAGGTCAATATTCAATACATGAGAAGGAACAATATGACAGCTAGTATGTTTGACTTATCAATGAAGGACAAGACAAGATCAGCTTTTGCAAAATTAAGAGATAAGATTAAGGGAAGAAAGAGTGATGGGGTGTTTTCAGAAACTTCG---GCGATCATACCAAGCACTCACATCCCTGATCCAAATCCTGAGTTTTCCAGTGATGAAATGCAAATGGAATCCTCAGCAAAAAAGCCTTTTCTTTTGGGTCCACAGCAACTCTCTTCTGCCCATTCAATGACTGAATTGACAGGGTCC------CCATCAGAGATGCTGAAATCAAGCACTGTAGGCCCAACACATCTTCTAAGTTGCCAGATAGATTCCTATGGAGTTGTTCCCAAAAGTGgtgagtggatcataaactatgttttccacacttatagtgtatacaagcct Alignment from Spaln_nt2Genome GTGGTTTAGATTAGAATCCAAACAAGGAAAAAGAATAAAAAACAGGGGTGAGATAAAGGTCAATATTCAATTTATGAG---GAACAACATGACAGCAAGCATGTTTGACTTGTCAATGAAGGACAAGACGAGATCACCTTTTGCAAAATTAAAAGATAAGATGAAAGGGAGGAAAAGCGACGGGGTGTTTTCTGATACGTCCTCTGCCATCGTTCCGAGCACTCACATGCCTGATGCCAATCCTGAGTTTTCAAGTGGTGAAATGCAGATGAAATCCAAACCAAAAAAGCCTTTTCTTTTGGGTCCTCAGCGGCTCTCTTCTGCCCATTCGATGTCTGATTTAACTGGGTCCCACTTATCTTCTGAGAAGCTGAAGTCCAGCACTGTGGGTCCAACACATCTTCTCAGTCGCCAGATAGATTCCTTTGGAGTTGTTCCAGAAAGTG ctccttactgtcattatttgctacatgtcaaatattcttgtcccttttagGTGGTACAGATTGGAATCTACACAAGGAAAAAGAATAAAAAACAGGGGTGAAATAGAGGTCAATATTCAATACATGAGAAGGAACAATATGACAGCTAGTATGTTTGACTTATCAATGAAGGACAAGACAAGATCAGCTTTTGCAAAATTAAGAGATAAGATTAAGGGAAGAAAGAGTGATGGGGTGTTTTCAGAAA---CTTCGGCGATCATACCAAGCACTCACATCCCTGATCCAAATCCTGAGTTTTCCAGTGATGAAATGCAAATGGAATCCTCAGCAAAAAAGCCTTTTCTTTTGGGTCCACAGCAACTCTCTTCTGCCCATTCAATGACTGAATTGACAGGGTCCC------CATCAGAGATGCTGAAATCAAGCACTGTAGGCCCAACACATCTTCTAAGTTGCCAGATAGATTCCTATGGAGTTGTTCCCAAAAGTGgtgagtggatcataaactatgttttccacacttatagtgtatacaagcct Alignment from Pairagon GTGGTTTAGATTAGAATCCAAACAAGGAAAAAGAATAAAAAACAGGGGTGAGATAAAGGTCAATATTCAATTTATG---AGGAACAACATGACAGCAAGCATGTTTGACTTGTCAATGAAGGACAAGACGAGATCACCTTTTGCAAAATTAAAAGATAAGATGAAAGGGAGGAAAAGCGACGGGGTGTTTTCTGATACGTCCTCTGCCATCGTTCCGAGCACTCACATGCCTGATGCCAATCCTGAGTTTTCAAGTGGTGAAATGCAGATGAAATCCAAACCAAAAAAGCCTTTTCTTTTGGGTCCTCAGCGGCTCTCTTCTGCCCATTCGATGTCTGATTTAACTGGGTCCCACTTATCTTCTGAGAAGCTGAAGTCCAGCACTGTGGGTCCAACACATCTTCTCAGTCGCCAGATAGATTCCTTTGGAGTTGTTCCAGAAAGTG ctccttactgtcattatttgctacatgtcaaatattcttgtcccttttagGTGGTACAGATTGGAATCTACACAAGGAAAAAGAATAAAAAACAGGGGTGAAATAGAGGTCAATATTCAATACATGAGAAGGAACAATATGACAGCTAGTATGTTTGACTTATCAATGAAGGACAAGACAAGATCAGCTTTTGCAAAATTAAGAGATAAGATTAAGGGAAGAAAGAGTGATGGGGTGTTTTCAGAAA---CTTCGGCGATCATACCAAGCACTCACATCCCTGATCCAAATCCTGAGTTTTCCAGTGATGAAATGCAAATGGAATCCTCAGCAAAAAAGCCTTTTCTTTTGGGTCCACAGCAACTCTCTTCTGCCCATTCAATGACTGAATTGACAGGGTCCC------CATCAGAGATGCTGAAATCAAGCACTGTAGGCCCAACACATCTTCTAAGTTGCCAGATAGATTCCTATGGAGTTGTTCCCAAAAGTGgtgagtggatcataaactatgttttccacacttatagtgtatacaagcct Alignment from Exonerate_protein2genome GTGGTTTAGATTAGAATCCAAACAAGGAAAAAGAATAAAAAACAGGGGTGAGATAAAGGTCAATATTCAATTTATG---AGGAACAACATGACAGCAAGCATGTTTGACTTGTCAATGAAGGACAAGACGAGATCACCTTTTGCAAAATTAAAAGATAAGATGAAAGGGAGGAAAAGCGACGGGGTGTTTTCTGATACGTCCTCTGCCATCGTTCCGAGCACTCACATGCCTGATGCCAATCCTGAGTTTTCAAGTGGTGAAATGCAGATGAAATCCAAACCAAAAAAGCCTTTTCTTTTGGGTCCTCAGCGGCTCTCTTCTGCCCATTCGATGTCTGATTTAACTGGGTCCCACTTATCTTCTGAGAAGCTGAAGTCCAGCACTGTGGGTCCAACACATCTTCTCAGTCGCCAGATAGATTCCTTTGGAGTTGTTCCAGAAAGTG ctccttactgtcattatttgctacatgtcaaatattcttgtcccttttagGTGGTACAGATTGGAATCTACACAAGGAAAAAGAATAAAAAACAGGGGTGAAATAGAGGTCAATATTCAATACATGAGAAGGAACAATATGACAGCTAGTATGTTTGACTTATCAATGAAGGACAAGACAAGATCAGCTTTTGCAAAATTAAGAGATAAGATTAAGGGAAGAAAGAGTGATGGGGTGTTTTCAGAAACT---TCGGCGATCATACCAAGCACTCACATCCCTGATCCAAATCCTGAGTTTTCCAGTGATGAAATGCAAATGGAATCCTCAGCAAAAAAGCCTTTTCTTTTGGGTCCACAGCAACTCTCTTCTGCCCATTCAATGACTGAATTGACAGGGTCC------CCATCAGAGATGCTGAAATCAAGCACTGTAGGCCCAACACATCTTCTAAGTTGCCAGATAGATTCCTATGGAGTTGTTCCCAAAAGTGgtgagtggatcataaactatgttttccacacttatagtgtatacaagcct Alignment from Exonerate_coding2genome GTGGTTTAGATTAGAATCCAAACAAGGAAAAAGAATAAAAAACAGGGGTGAGATAAAGGTCAATATTCAATTTATG---AGGAACAACATGACAGCAAGCATGTTTGACTTGTCAATGAAGGACAAGACGAGATCACCTTTTGCAAAATTAAAAGATAAGATGAAAGGGAGGAAAAGCGACGGGGTGTTTTCTGATACGTCCTCTGCCATCGTTCCGAGCACTCACATGCCTGATGCCAATCCTGAGTTTTCAAGTGGTGAAATGCAGATGAAATCCAAACCAAAAAAGCCTTTTCTTTTGGGTCCTCAGCGGCTCTCTTCTGCCCATTCGATGTCTGATTTAACTGGGTCCCACTTATCTTCTGAGAAGCTGAAGTCCAGCACTGTGGGTCCAACACATCTTCTCAGTCGCCAGATAGATTCCTTTGGAGTTGTTCCAGAAAGTG ctccttactgtcattatttgctacatgtcaaatattcttgtcccttttagGTGGTACAGATTGGAATCTACACAAGGAAAAAGAATAAAAAACAGGGGTGAAATAGAGGTCAATATTCAATACATGAGAAGGAACAATATGACAGCTAGTATGTTTGACTTATCAATGAAGGACAAGACAAGATCAGCTTTTGCAAAATTAAGAGATAAGATTAAGGGAAGAAAGAGTGATGGGGTGTTTTCAGAAACT---TCGGCGATCATACCAAGCACTCACATCCCTGATCCAAATCCTGAGTTTTCCAGTGATGAAATGCAAATGGAATCCTCAGCAAAAAAGCCTTTTCTTTTGGGTCCACAGCAACTCTCTTCTGCCCATTCAATGACTGAATTGACAGGGTCC------CCATCAGAGATGCTGAAATCAAGCACTGTAGGCCCAACACATCTTCTAAGTTGCCAGATAGATTCCTATGGAGTTGTTCCCAAAAGTGgtgagtggatcataaactatgttttccacacttatagtgtatacaagcct Alignment from GeneWise GTGGTTTAGATTAGAATCCAAACAAGGAAAAAGAATAAAAAACAGGGGTGAGATAAAGGTCAATATTCAATTTATGAGG---AACAACATGACAGCAAGCATGTTTGACTTGTCAATGAAGGACAAGACGAGATCACCTTTTGCAAAATTAAAAGATAAGATGAAAGGGAGGAAAAGCGACGGGGTGTTTTCTGATACGTCCTCTGCCATCGTTCCGAGCACTCACATGCCTGATGCCAATCCTGAGTTTTCAAGTGGTGAAATGCAGATGAAATCCAAACCAAAAAAGCCTTTTCTTTTGGGTCCTCAGCGGCTCTCTTCTGCCCATTCGATGTCTGATTTAACTGGGTCCCACTTATCTTCTGAGAAGCTGAAGTCCAGCACTGTGGGTCCAACACATCTTCTCAGTCGCCAGATAGATTCCTTTGGAGTTGTTCCAGAAAGTGGAAG ctccttactgtcattatttgctacatgtcaaatattcttgtcccttttagGTGGTACAGATTGGAATCTACACAAGGAAAAAGAATAAAAAACAGGGGTGAAATAGAGGTCAATATTCAATACATGAGAAGGAACAATATGACAGCTAGTATGTTTGACTTATCAATGAAGGACAAGACAAGATCAGCTTTTGCAAAATTAAGAGATAAGATTAAGGGAAGAAAGAGTGATGGGGTGTTTTCAGAAACTTCG---GCGATCATACCAAGCACTCACATCCCTGATCCAAATCCTGAGTTTTCCAGTGATGAAATGCAAATGGAATCCTCAGCAAAAAAGCCTTTTCTTTTGGGTCCACAGCAACTCTCTTCTGCCCATTCAATGACTGAATTGACAGGGTCC------CCATCAGAGATGCTGAAATCAAGCACTGTAGGCCCAACACATCTTCTAAGTTGCCAGATAGATTCCTATGGAGTTGTTCCCAAAAGTGGTGAgtggatcataaactatgttttccacacttatagtgtatacaagcct #### Rab1b_ID845_3 --> 0 - 0 Original Alignment GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccagatcttggtttgtttcccactcagtctctctctctctctctctcagGATGATACTTACACAGAAAGCTACATCAGCACCATTGGTGTTGATTTTAAGATACGAACAATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgcaagttctagcctggtccagtgtcttgtggctgttttctgaacttttcc Alignment from CESAR GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccagatcttggtttgtttcccactcagtctctctctctctctctctcagGATGATACTTACACAGAAAGCTACATCAGCACCATTGGTGTTGATTTTAAGATACGAACAATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgcaagttctagcctggtccagtgtcttgtggctgctttctctttttctct Alignment from Spaln_aa2Genome GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccagatcttggtttgtttcccactcagtctctctctctctctctctcagGATGATACTTACACAGAAAGCTACATCAGCACCATTGGTGTTGATTTTAAGATACGAACAATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgcaagttctagcctggtccagtgtcttgtggctgttttctgaacttttcc Alignment from Spaln_nt2Genome GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccagatcttggtttgtttcccactcagtctctctctctctctctctcagGATGATACTTACACAGAAAGCTACATCAGCACCATTGGTGTTGATTTTAAGATACGAACAATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgcaagttctagcctggtccagtgtcttgtggctgttttctgaacttttcc Alignment from Pairagon GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccagatcttggtttgtttcccactcagtctctctctctctctctctcagGATGATACTTACACAGAAAGCTACATCAGCACCATTGGTGTTGATTTTAAGATACGAACAATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgcaagttctagcctggtccagtgtcttgtggctgttttctgaacttttcc Alignment from Exonerate_protein2genome GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccagatcttggtttgtttcccactcagtctctctctctctctctctcagGATGATACTTACACAGAAAGCTACATCAGCACCATTGGTGTTGATTTTAAGATACGAACAATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgcaagttctagcctggtccagtgtcttgtggctgttttctgaacttttcc Alignment from Exonerate_coding2genome GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccagatcttggtttgtttcccactcagtctctctctctctctctctcagGATGATACTTACACAGAAAGCTACATCAGCACCATTGGTGTTGATTTTAAGATACGAACAATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgcaagttctagcctggtccagtgtcttgtggctgttttctgaacttttcc Alignment from GeneWise GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT--------------- gccagatcttggtttgtttcccactcagtctctctctctctctctctcagGATGATACTTACACAGAAAGCTACATCAGCACCATTGGTGTTGATTTTAAGATACGAACAATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCGCAAGTTCTAGCCTGgtccagtgtcttgtggctgttttctgaacttttcc #### Rab3il1_ID2652_7 --> 0 - 2 Original Alignment CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCaa tcttgtagtgatctgtcaccctcttaagtactttctttttaactccgtagCTTTCAGCTTTGGTTCGAACTGCTGTAGAAGACAATACACTCACTATTGAGCCTGTAGCTTCACAGACACTGCCTGCAGTGAAGGTACCTAGTATTGAGTGTAACAACACCaagtgagttcacactcccactactcccatgtctctgaaaggctcaaaatttc Alignment from CESAR CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCaa tcttgtagtgatctgtcaccctcttaagtactttctttttaactccgtagCTTTCAGCTTTGGTTCGAACTGCTGTAGAAGACAATACACTCACTATTGAGCCTGTAGCTTCACAGACACTGCCTGCAGTGAAGGTACCTAGTATTGAGTGTAACAACACCaagtgagttcacactcccactactcccatgtctctgaaaggctcaaaatttc Alignment from Spaln_aa2Genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tcttgtagtgatctgtcaccctcttaagtactttctttttaactccgtagCTTTCAGCTTTGGTTCGAACTGCTGTAGAAGACAATACACTCACTATTGAGCCTGTAGCTTCACAGACACTGCCTGCAGTGAAGGTACCTAGTATTGAGTGTAACAACACCAAgtgagttcacactcccactactcccatgtctctgaaaggctcaaaatttc Alignment from Spaln_nt2Genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tcttgtagtgatctgtcaccctcttaagtactttctttttaactccgtagCTTTCAGCTTTGGTTCGAACTGCTGTAGAAGACAATACACTCACTATTGAGCCTGTAGCTTCACAGACACTGCCTGCAGTGAAGGTACCTAGTATTGAGTGTAACAACACCAAgtgagttcacactcccactactcccatgtctctgaaaggctcaaaatttc Alignment from Pairagon CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tcttgtagtgatctgtcaccctcttaagtactttctttttaactccgtagCTTTCAGCTTTGGTTCGAACTGCTGTAGAAGACAATACACTCACTATTGAGCCTGTAGCTTCACAGACACTGCCTGCAGTGAAGGTACCTAGTATTGAGTGTAACAACACCAAgtgagttcacactcccactactcccatgtctctgaaaggctcaaaatttc Alignment from Exonerate_protein2genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tcttgtagtgatctgtcaccctcttaagtactttctttttaactccgtagCTTTCAGCTTTGGTTCGAACTGCTGTAGAAGACAATACACTCACTATTGAGCCTGTAGCTTCACAGACACTGCCTGCAGTGAAGGTACCTAGTATTGAGTGTAACAACACCAAgtgagttcacactcccactactcccatgtctctgaaaggctcaaaatttc Alignment from Exonerate_coding2genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tcttgtagtgatctgtcaccctcttaagtactttctttttaactccgtagCTTTCAGCTTTGGTTCGAACTGCTGTAGAAGACAATACACTCACTATTGAGCCTGTAGCTTCACAGACACTGCCTGCAGTGAAGGTACCTAGTATTGAGTGTAACAACACCAAgtgagttcacactcccactactcccatgtctctgaaaggctcaaaatttc Alignment from GeneWise CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tcttgtagtgatctgtcaccctcttaagtactttctttttaactccgtagCTTTCAGCTTTGGTTCGAACTGCTGTAGAAGACAATACACTCACTATTGAGCCTGTAGCTTCACAGACACTGCCTGCAGTGAAGGTACCTAGTATTGAGTGTAACAACACCAAgtgagttcacactcccactactcccatgtctctgaaaggctcaaaatttc #### Rasgrp2_ID1704_3 --> 1 - 2 Original Alignment cTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCag agatgcaataagtaaagaatgcccatctcctaatgtctccttaatcatagcTATCAACAATCCCGGAAGGATAACTCTAATTCCCTACAGATGAAAACATGTCACCTGGTCaggtgagtctggtctttaaagttaatcttggatggattaaaggcaaatgtta Alignment from CESAR cTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCag agatgcaataagtaaagaatgcccatctcctaatgtctccttaatcatagcTATCAACAATCCCGGAAGGATAACTCTAATTCCCTACAGATGAAAACATGTCACCTGGTCaggtgagtctggtctttaaagttaatcttggatggattaaaggcaaatgtta Alignment from Spaln_aa2Genome CTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCAG agatgcaataagtaaagaatgcccatctcctaatgtctccttaatcatagCTATCAACAATCCCGGAAGGATAACTCTAATTCCCTACAGATGAAAACATGTCACCTGGTCAGgtgagtctggtctttaaagttaatcttggatggattaaaggcaaatgtta Alignment from Spaln_nt2Genome CTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCAG agatgcaataagtaaagaatgcccatctcctaatgtctccttaatcatagCTATCAACAATCCCGGAAGGATAACTCTAATTCCCTACAGATGAAAACATGTCACCTGGTCAGgtgagtctggtctttaaagttaatcttggatggattaaaggcaaatgtta Alignment from Pairagon CTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCAG agatgcaataagtaaagaatgcccatctcctaatgtctccttaatcatagCTATCAACAATCCCGGAAGGATAACTCTAATTCCCTACAGATGAAAACATGTCACCTGGTCAGgtgagtctggtctttaaagttaatcttggatggattaaaggcaaatgtta Alignment from Exonerate_protein2genome CTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCAG agatgcaataagtaaagaatgcccatctcctaatgtctccttaatcatagCTATCAACAATCCCGGAAGGATAACTCTAATTCCCTACAGATGAAAACATGTCACCTGGTCAGgtgagtctggtctttaaagttaatcttggatggattaaaggcaaatgtta Alignment from Exonerate_coding2genome CTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCAG agatgcaataagtaaagaatgcccatctcctaatgtctccttaatcatagCTATCAACAATCCCGGAAGGATAACTCTAATTCCCTACAGATGAAAACATGTCACCTGGTCAGgtgagtctggtctttaaagttaatcttggatggattaaaggcaaatgtta Alignment from GeneWise CTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCAG agatgcaataagtaaagaatgcccatctcctaatgtctccttaatcatagCTATCAACAATCCCGGAAGGATAACTCTAATTCCCTACAGATGAAAACATGTCACCTGGTCAGgtgagtctggtctttaaagttaatcttggatggattaaaggcaaatgtta #### Rasgrp2_ID1708_7 --> 0 - 0 Original Alignment AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG aaggatgatctgtagtctagggataagggtcttgttttgttttgttttagAGGCTGCTCCAGCTGCAGAACTTCAACACATTCATGGCAGTTGTGGGAGGCCTGAGCCACAGCTCCATGTCCCGGCTCAAGGAGACTCATAGCCATGTCAGCCCTGACACCATTAAGgtaagtagttctattgggcagtggttgaagattgagtgattggggagtga Alignment from CESAR AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG aaggatgatctgtagtctagggataagggtcttgttttgttttgttttagAGGCTGCTCCAGCTGCAGAACTTCAACACATTCATGGCAGTTGTGGGAGGCCTGAGCCACAGCTCCATGTCCCGGCTCAAGGAGACTCATAGCCATGTCAGCCCTGACACCATTAAGgtaagtagttctattgggcagtggttgaagattgagtgattggggagtga Alignment from Spaln_aa2Genome AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG aaggatgatctgtagtctagggataagggtcttgttttgttttgttttagAGGCTGCTCCAGCTGCAGAACTTCAACACATTCATGGCAGTTGTGGGAGGCCTGAGCCACAGCTCCATGTCCCGGCTCAAGGAGACTCATAGCCATGTCAGCCCTGACACCATTAAGgtaagtagttctattgggcagtggttgaagattgagtgattggggagtga Alignment from Spaln_nt2Genome AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG aaggatgatctgtagtctagggataagggtcttgttttgttttgttttagAGGCTGCTCCAGCTGCAGAACTTCAACACATTCATGGCAGTTGTGGGAGGCCTGAGCCACAGCTCCATGTCCCGGCTCAAGGAGACTCATAGCCATGTCAGCCCTGACACCATTAAGgtaagtagttctattgggcagtggttgaagattgagtgattggggagtga Alignment from Pairagon AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG aaggatgatctgtagtctagggataagggtcttgttttgttttgttttagAGGCTGCTCCAGCTGCAGAACTTCAACACATTCATGGCAGTTGTGGGAGGCCTGAGCCACAGCTCCATGTCCCGGCTCAAGGAGACTCATAGCCATGTCAGCCCTGACACCATTAAGgtaagtagttctattgggcagtggttgaagattgagtgattggggagtga Alignment from Exonerate_protein2genome AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG aaggatgatctgtagtctagggataagggtcttgttttgttttgttttagAGGCTGCTCCAGCTGCAGAACTTCAACACATTCATGGCAGTTGTGGGAGGCCTGAGCCACAGCTCCATGTCCCGGCTCAAGGAGACTCATAGCCATGTCAGCCCTGACACCATTAAGgtaagtagttctattgggcagtggttgaagattgagtgattggggagtga Alignment from Exonerate_coding2genome AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG aaggatgatctgtagtctagggataagggtcttgttttgttttgttttagAGGCTGCTCCAGCTGCAGAACTTCAACACATTCATGGCAGTTGTGGGAGGCCTGAGCCACAGCTCCATGTCCCGGCTCAAGGAGACTCATAGCCATGTCAGCCCTGACACCATTAAGgtaagtagttctattgggcagtggttgaagattgagtgattggggagtga Alignment from GeneWise AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG aaggatgatctgtagtctagggataagggtcttgttttgttttgttttagAGGCTGCTCCAGCTGCAGAACTTCAACACATTCATGGCAGTTGTGGGAGGCCTGAGCCACAGCTCCATGTCCCGGCTCAAGGAGACTCATAGCCATGTCAGCCCTGACACCATTAAGgtaagtagttctattgggcagtggttgaagattgagtgattggggagtga #### Rbm20_ID11375_2 --> 1 - 0 Original Alignment tGCTGCCAAGCTCCTGGATAAGAGCCCCTTCTCGGTCAATAACCAGAACCCTCTGCTCACGTCGCCAGCCAGCGTCCAGCTGGCCCAGATACAGGCTCAGCTCACCCTCCATCGGCTGAAGATGGCACAGACCGCAGTCACCAACAACACTGCAGCGGCCACGGTTCTGAACCAAGTCCTCTCCAAAGTGGCCATGTCCCAGCCTCTCTTCAACCAGCTCCGGCATCCGTCTGTGCTCGGCACCGCACATGGCCCTACTGGGGTGTCCCAGCATGCTGCCTCGGTTCCCAGCGCTCACTTCCCCTCAACCGCAATCGCCTTTTCGCCCCCAAGCCAGACAGGAGGCCCAGGGCCTTCTGTGAGCCTCCCCAGCCAGCCCCCCAATGCTATGGTAGTTCATACCTTCAGTGGAGTGGTA---CCTCAGACCCCTGCCCAGCCAGCTGTCATCCTTAGCCTTGGGAAGGCTGGGCCTACACCGGCTACTACAGGGTTCTATGACTATGGCAAAGCCAACTCCGGCCAAGCGTATGGTTCTGAAACGGAGGGCCAGCCAGGCTTCTTGCCAGCCTCG---GCCTCAGCCACAGCATCAGGCAGTATGACCTATGAAGGGCACTATAGCCACACAGGGCAGGATGGCCAACCTGCCTTTTCTAAAGACTTCTATGGACCCAATGCCCAAGGGCCACACATAGCAGGTGGATTTCCAGCTGATCAGACTGGGAGCATGAAGGGAGACGTTGGTGGGCTGTTGCAAGGCACCAACAGCCAGTGGGAGAGGCCCCCTGGATTCTCAGGCCAAAACAAGCCCGATATTACAGCGGGACCCAGTTTGTGGGCTCCACCTGCCAGCCAG---CCTTATGAGCTCTATGAC------CCTGAAGAGCCTACCTCAGACAGGGCCCCTCCTGCCTTTGGGTCTCGGCTTAACAACAGCAAGCAGGGATTCGGCTGCTCTTGCCGAAGGACAAAGGAGGGACAGGCTGTGCTGTCCGTGAGGCCCCTGCAGGGTCATCAACTGAACGATTTCCGAGGCTTGGCTCCACTCCACCTACCACATATCTGCAGCATCTGTGACAAGAAGGTGTTTGACTTGAAG aaggaatgctggaaatgaggactgatggtctctccatttctcttctccagtGCTGCCAAACTCTTGGATAAGAGCCCTTTCTCTGTCAATAACCAGAATCCCCTGCTGACACTGCCAGCTGATGTTCAACTGGCTCAGATACAGGCTCAACTTACACTTCACCGGCTAGAAATGGCACAAACTGCTGTTACAAATAACACTGCAGCTGCCACAGTCTTAAATGAAGTGCTCTCCAAAGTTGCCATGTCTCAACCTCTTTTTAACCAGCTCCGTCATCCATCTGTGCTTGGTACAGCACATGGTCCTACTGGCGTATCTCAGCAT---GCATCAGTTCCCAGTGCATATTTTCCCTCTACAACTATTGCCTTTTTACCCCCAAGTCAAACAGGGGGCCCAGGCCTTACAGTGGGCATTCCATGCCAGCGCCCT------ATGACAGTTCATATGTTCAGTGGGGTGGCACTCCCACAGACCCCTGCCCAACCAGCTGTAATACTTAGTCTGGGGAAGGCTGGACCCACACGAGCTACAACTGGGCTATATGACTATGGCAAAGCCAACTCAGGCCAAGCATATGGTTCTGAAATGGAGGGCCAACAGAGCTTCTTGCCAGCCTCAGCAGCATCAGCTACTGCATCAGGTAGTATGACCTATGAAGGGCAC---TGCCAATCAGGGCAAGATGGCCAGGCAGCATTTTCTAAGGACTTCTATGGACCCAACGCCCAAGGGCCACACATAGCTGGTGGATTTCCAGCTGATCAGACTGGGAGCATGAAGGGACACGTTGGTGGGTTGCTACAAGGCACCAACAGCCAGTGGGAGAGGCCCCCTGGCTTCTCAGGTAAAAATAAGCCAGATATCACAGCAAGACCAAGTTTATGGGGCCCACCTGCAAGCCACCAGCCTTATGGACTCTATGAATATGATCCTGAAGAGCCGAAATCAGACAGGGCCCCCCCTGCCTTTGGCTCTCGCCTTAACAATAGAAAGCAGGGATTTGGCTGCTCA---CGTAGGACAAAGGAAGGACAG---GTGTTGTCTGTAAGGCCGTTGCAGAGTTATCAGTTGAATGATTTCCGCAGCTTAGCTCCACTTCATCTACCACATATCTGTAGCATCTGTGGCAAGAAGGTCTTTGACTTTGAGgtataataccaaagaagggctcaggtaaaagaacaatttgtcatgtgccc Alignment from CESAR tGCTGCCAAGCTCCTGGATAAGAGCCCCTTCTCGGTCAATAACCAGAACCCTCTGCTCACGTCGCCAGCCAGCGTCCAGCTGGCCCAGATACAGGCTCAGCTCACCCTCCATCGGCTGAAGATGGCACAGACCGCAGTCACCAACAACACTGCAGCGGCCACGGTTCTGAACCAAGTCCTCTCCAAAGTGGCCATGTCCCAGCCTCTCTTCAACCAGCTCCGGCATCCGTCTGTGCTCGGCACCGCACATGGCCCTACTGGGGTGTCCCAGCATGCTGCCTCGGTTCCCAGCGCTCACTTCCCCTCAACCGCAATCGCCTTTTCGCCCCCAAGCCAGACAGGAGGCCCAGGGCCTTCTGTGAGCCTCCCCAGCCAGCCCCCCAATGCTATGGTAGTTCATACCTTCAGTGGAGTGGTA---CCTCAGACCCCTGCCCAGCCAGCTGTCATCCTTAGCCTTGGGAAGGCTGGGCCTACACCGGCTACTACAGGGTTCTATGACTATGGCAAAGCCAACTCCGGCCAAGCGTATGGTTCTGAAACGGAGGGCCAGCCAGGCTTCTTGCCAGCCTCG---GCCTCAGCCACAGCATCAGGCAGTATGACCTATGAAGGGCACTATAGCCACACAGGGCAGGATGGCCAACCTGCCTTTTCTAAAGACTTCTATGGACCCAATGCCCAAGGGCCACACATAGCAGGTGGATTTCCAGCTGATCAGACTGGGAGCATGAAGGGAGACGTTGGTGGGCTGTTGCAAGGCACCAACAGCCAGTGGGAGAGGCCCCCTGGATTCTCAGGCCAAAACAAGCCCGATATTACAGCGGGACCCAGTTTGTGGGCTCCACCTGCCAGC---CAGCCTTATGAGCTC------TATGACCCTGAAGAGCCTACCTCAGACAGGGCCCCTCCTGCCTTTGGGTCTCGGCTTAACAACAGCAAGCAGGGATTCGGCTGCTCTTGCCGAAGGACAAAGGAGGGACAGGCTGTGCTGTCCGTGAGGCCCCTGCAGGGTCATCAACTGAACGATTTCCGAGGCTTGGCTCCACTCCACCTACCACATATCTGCAGCATCTGTGACAAGAAGGTGTTTGACTTGAAG aaggaatgctggaaatgaggactgatggtctctccatttctcttctccagtGCTGCCAAACTCTTGGATAAGAGCCCTTTCTCTGTCAATAACCAGAATCCCCTGCTGACACTGCCAGCTGATGTTCAACTGGCTCAGATACAGGCTCAACTTACACTTCACCGGCTAGAAATGGCACAAACTGCTGTTACAAATAACACTGCAGCTGCCACAGTCTTAAATGAAGTGCTCTCCAAAGTTGCCATGTCTCAACCTCTTTTTAACCAGCTCCGTCATCCATCTGTGCTTGGTACAGCACATGGTCCTACTGGCGTATCTCAGCATGCA---TCAGTTCCCAGTGCATATTTTCCCTCTACAACTATTGCCTTTTTACCCCCAAGTCAAACAGGGGGCCCAGGCCTTACAGTGGGCATTCCATGCCAGCGCCCT------ATGACAGTTCATATGTTCAGTGGGGTGGCACTCCCACAGACCCCTGCCCAACCAGCTGTAATACTTAGTCTGGGGAAGGCTGGACCCACACGAGCTACAACTGGGCTATATGACTATGGCAAAGCCAACTCAGGCCAAGCATATGGTTCTGAAATGGAGGGCCAACAGAGCTTCTTGCCAGCCTCAGCAGCATCAGCTACTGCATCAGGTAGTATGACCTATGAAGGGCAC---TGCCAATCAGGGCAAGATGGCCAGGCAGCATTTTCTAAGGACTTCTATGGACCCAACGCCCAAGGGCCACACATAGCTGGTGGATTTCCAGCTGATCAGACTGGGAGCATGAAGGGACACGTTGGTGGGTTGCTACAAGGCACCAACAGCCAGTGGGAGAGGCCCCCTGGCTTCTCAGGTAAAAATAAGCCAGATATCACAGCAAGACCAAGTTTATGGGGCCCACCTGCAAGCCACCAGCCTTATGGACTCTATGAATATGATCCTGAAGAGCCGAAATCAGACAGGGCCCCCCCTGCCTTTGGCTCTCGCCTTAACAATAGAAAGCAGGGATTTGGCTGCTCA---CGTAGGACAAAGGAAGGACAG---GTGTTGTCTGTAAGGCCGTTGCAGAGTTATCAGTTGAATGATTTCCGCAGCTTAGCTCCACTTCATCTACCACATATCTGTAGCATCTGTGGCAAGAAGGTCTTTGACTTTGAGgtataataccaaagaagggctcaggtaaaagaacaatttgtcatgtgccc Alignment from Spaln_aa2Genome TGCTGCCAAGCTCCTGGATAAGAGCCCCTTCTCGGTCAATAACCAGAACCCTCTGCTCACGTCGCCAGCCAGCGTCCAGCTGGCCCAGATACAGGCTCAGCTCACCCTCCATCGGCTGAAGATGGCACAGACCGCAGTCACCAACAACACTGCAGCGGCCACGGTTCTGAACCAAGTCCTCTCCAAAGTGGCCATGTCCCAGCCTCTCTTCAACCAGCTCCGGCATCCGTCTGTGCTCGGCACCGCACATGGCCCTACTGGGGTGTCCCAGCATGCTGCCTCGGTTCCCAGCGCTCACTTCCCCTCAACCGCAATCGCCTTTTCGCCCCCAAGCCAGACAGGAGGCCCAGGGCCTTCTGTGAGCCTCCCCAGCCAGCCCCCCAATGCTATGGTAGTTCATACCTTCAGTGGAGTG---GTACCTCAGACCCCTGCCCAGCCAGCTGTCATCCTTAGCCTTGGGAAGGCTGGGCCTACACCGGCTACTACAGGGTTCTATGACTATGGCAAAGCCAACTCCGGCCAAGCGTATGGTTCTGAAACGGAGGGCCAGCCAGGCTTCTTGCCAGCCTCGGCCTCAGCCACAGCATCAGGCAGTATGACCTATGAAGGGCACTATAGCCACACAGGGCAGGATGGCCAACCTGCCTTTTCTAAAGACTTCTATGGACCCAATGCCCAAGGGCCACACATAGCAGGTGGATTTCCAGCTGATCAGACTGGGAGCATGAAGGGAGACGTTGGTGGGCTGTTGCAAGGCACCAACAGCCAGTGGGAGAGGCCCCCTGGATTCTCAGGCCAAAACAAGCCCGATATTACAGCGGGACCCAGTTTGTGGGCTCCACCTGCCAGC---CAGCCTTATGAGCTC------TATGACCCTGAAGAGCCTACCTCAGACAGGGCCCCTCCTGCCTTTGGGTCTCGGCTTAACAACAGCAAGCAGGGATTCGGCTGCTCTTGCCGAAGGACAAAGGAGGGACAGGCTGTGCTGTCCGTGAGGCCCCTGCAGGGTCATCAACTGAACGATTTCCGAGGCTTGGCTCCACTCCACCTACCACATATCTGCAGCATCTGTGACAAGAAGGTGTTTGACTTGAAG aaggaatgctggaaatgaggactgatggtctctccatttctcttctccagTGCTGCCAAACTCTTGGATAAGAGCCCTTTCTCTGTCAATAACCAGAATCCCCTGCTGACACTGCCAGCTGATGTTCAACTGGCTCAGATACAGGCTCAACTTACACTTCACCGGCTAGAAATGGCACAAACTGCTGTTACAAATAACACTGCAGCTGCCACAGTCTTAAATGAAGTGCTCTCCAAAGTTGCCATGTCTCAACCTCTTTTTAACCAGCTCCGTCATCCATCTGTGCTTGGTACAGCACATGGTCCTACTGGCGTATCTCAGCATGCA---TCAGTTCCCAGTGCATATTTTCCCTCTACAACTATTGCCTTTTTACCCCCAAGTCAAACAGGGGGCCCAGGCCTTACAGTGGGCATTCCATGCCAGCGCCCT------ATGACAGTTCATATGTTCAGTGGGGTGGCACTCCCACAGACCCCTGCCCAACCAGCTGTAATACTTAGTCTGGGGAAGGCTGGACCCACACGAGCTACAACTGGGCTATATGACTATGGCAAAGCCAACTCAGGCCAAGCATATGGTTCTGAAATGGAGGGCCAACAGAGCTTCTTGCCAGCCTCAGCAGCATCAGCTACTGCATCAGGTAGTATGACCTATGAAGGGCACTGCCAATCAGGGCAAGATGGCCAGGCAGCATTTTCTAAGGACTTCTATGGACCCAACGCCCAAGGGCCACACATAGCTGGTGGATTTCCAGCTGATCAGACTGGGAGCATGAAGGGACACGTTGGTGGGTTGCTACAAGGCACCAACAGCCAGTGGGAGAGGCCCCCTGGCTTCTCAGGTAAAAATAAGCCAGATATCACAGCAAGACCAAGTTTATGGGGCCCACCTGCAAGCCACCAGCCTTATGGACTCTATGAATATGATCCTGAAGAGCCGAAATCAGACAGGGCCCCCCCTGCCTTTGGCTCTCGCCTTAACAATAGAAAGCAGGGATTTGGCTGCTCA---CGTAGGACAAAGGAAGGACAG---GTGTTGTCTGTAAGGCCGTTGCAGAGTTATCAGTTGAATGATTTCCGCAGCTTAGCTCCACTTCATCTACCACATATCTGTAGCATCTGTGGCAAGAAGGTCTTTGACTTTGAGgtataataccaaagaagggctcaggtaaaagaacaatttgtcatgtgccc Alignment from Spaln_nt2Genome TGCTGCCAAGCTCCTGGATAAGAGCCCCTTCTCGGTCAATAACCAGAACCCTCTGCTCACGTCGCCAGCCAGCGTCCAGCTGGCCCAGATACAGGCTCAGCTCACCCTCCATCGGCTGAAGATGGCACAGACCGCAGTCACCAACAACACTGCAGCGGCCACGGTTCTGAACCAAGTCCTCTCCAAAGTGGCCATGTCCCAGCCTCTCTTCAACCAGCTCCGGCATCCGTCTGTGCTCGGCACCGCACATGGCCCTACTGGGGTGTCCCAGCATGCTGCCTCGGTTCCCAGCGCTCACTTCCCCTCAACCGCAATCGCCTTTTCGCCCCCAAGCCAGACAGGAGGCCCAGGGCCTTCTGTGAGCCTCCCCAGCCAGCCCCCCAATGCTATGGTAGTTCATACCTTCAGTGGAGTGGTAC---CTCAGACCCCTGCCCAGCCAGCTGTCATCCTTAGCCTTGGGAAGGCTGGGCCTACACCGGCTACTACAGGGTTCTATGACTATGGCAAAGCCAACTCCGGCCAAGCGTATGGTTCTGAAACGGAGGGCCAGCCAGGCTTCTTGCCAGCCTCGGCC---TCAGCCACAGCATCAGGCAGTATGACCTATGAAGGGCACTATAGCCACACAGGGCAGGATGGCCAACCTGCCTTTTCTAAAGACTTCTATGGACCCAATGCCCAAGGGCCACACATAGCAGGTGGATTTCCAGCTGATCAGACTGGGAGCATGAAGGGAGACGTTGGTGGGCTGTTGCAAGGCACCAACAGCCAGTGGGAGAGGCCCCCTGGATTCTCAGGCCAAAACAAGCCCGATATTACAGCGGGACCCAGTTTGTGGGCTCCACCTGCCAGCCA---GCCTTATGAGCTCTATGAC------CCTGAAGAGCCTACCTCAGACAGGGCCCCTCCTGCCTTTGGGTCTCGGCTTAACAACAGCAAGCAGGGATTCGGCTGCTCTTGCCGAAGGACAAAGGAGGGACAGGCTGTGCTGTCCGTGAGGCCCCTGCAGGGTCATCAACTGAACGATTTCCGAGGCTTGGCTCCACTCCACCTACCACATATCTGCAGCATCTGTGACAAGAAGGTGTTTGACTTGAAG aaggaatgctggaaatgaggactgatggtctctccatttctcttctccagTGCTGCCAAACTCTTGGATAAGAGCCCTTTCTCTGTCAATAACCAGAATCCCCTGCTGACACTGCCAGCTGATGTTCAACTGGCTCAGATACAGGCTCAACTTACACTTCACCGGCTAGAAATGGCACAAACTGCTGTTACAAATAACACTGCAGCTGCCACAGTCTTAAATGAAGTGCTCTCCAAAGTTGCCATGTCTCAACCTCTTTTTAACCAGCTCCGTCATCCATCTGTGCTTGGTACAGCACATGGTCCTACTGGCGTATCTCAGCA---TGCATCAGTTCCCAGTGCATATTTTCCCTCTACAACTATTGCCTTTTTACCCCCAAGTCAAACAGGGGGCCCAGGCCTTACAGTGGGCATTCCATGCCAGCGCC------CTATGACAGTTCATATGTTCAGTGGGGTGGCACTCCCACAGACCCCTGCCCAACCAGCTGTAATACTTAGTCTGGGGAAGGCTGGACCCACACGAGCTACAACTGGGCTATATGACTATGGCAAAGCCAACTCAGGCCAAGCATATGGTTCTGAAATGGAGGGCCAACAGAGCTTCTTGCCAGCCTCAGCAGCATCAGCTACTGCATCAGGTAGTATGACCTATGAAGGGCACT---GCCAATCAGGGCAAGATGGCCAGGCAGCATTTTCTAAGGACTTCTATGGACCCAACGCCCAAGGGCCACACATAGCTGGTGGATTTCCAGCTGATCAGACTGGGAGCATGAAGGGACACGTTGGTGGGTTGCTACAAGGCACCAACAGCCAGTGGGAGAGGCCCCCTGGCTTCTCAGGTAAAAATAAGCCAGATATCACAGCAAGACCAAGTTTATGGGGCCCACCTGCAAGCCACCAGCCTTATGGACTCTATGAATATGATCCTGAAGAGCCGAAATCAGACAGGGCCCCCCCTGCCTTTGGCTCTCGCCTTAACAATAGAAAGCAGGGATTTGGCTGCTC---ACGTAGGACAAAGGAAGGACAG---GTGTTGTCTGTAAGGCCGTTGCAGAGTTATCAGTTGAATGATTTCCGCAGCTTAGCTCCACTTCATCTACCACATATCTGTAGCATCTGTGGCAAGAAGGTCTTTGACTTTGAGgtataataccaaagaagggctcaggtaaaagaacaatttgtcatgtgccc Alignment from Pairagon TGCTGCCAAGCTCCTGGATAAGAGCCCCTTCTCGGTCAATAACCAGAACCCTCTGCTCACGTCGCCAGCCAGCGTCCAGCTGGCCCAGATACAGGCTCAGCTCACCCTCCATCGGCTGAAGATGGCACAGACCGCAGTCACCAACAACACTGCAGCGGCCACGGTTCTGAACCAAGTCCTCTCCAAAGTGGCCATGTCCCAGCCTCTCTTCAACCAGCTCCGGCATCCGTCTGTGCTCGGCACCGCACATGGCCCTACTGGGGTGTCCCAGCATGCTGCCTCGGTTCCCAGCGCTCACTTCCCCTCAACCGCAATCGCCTTTTCGCCCCCAAGCCAGACAGGAGGCCCAGGGCCTTCTGTGAGCCTCCCCAGCCAGCCCCCCAATGCTATGGTAGTTCATACCTTCAGTGGAGTGGTA---CCTCAGACCCCTGCCCAGCCAGCTGTCATCCTTAGCCTTGGGAAGGCTGGGCCTACACCGGCTACTACAGGGTTCTATGACTATGGCAAAGCCAACTCCGGCCAAGCGTATGGTTCTGAAACGGAGGGCCAGCCAGGCTTCTTGCCAGCCT---CGGCCTCAGCCACAGCATCAGGCAGTATGACCTATGAAGGGCACTATAGCCACACAGGGCAGGATGGCCAACCTGCCTTTTCTAAAGACTTCTATGGACCCAATGCCCAAGGGCCACACATAGCAGGTGGATTTCCAGCTGATCAGACTGGGAGCATGAAGGGAGACGTTGGTGGGCTGTTGCAAGGCACCAACAGCCAGTGGGAGAGGCCCCCTGGATTCTCAGGCCAAAACAAGCCCGATATTACAGCGGGACCCAGTTTGTGGGCTCCACCTGCCAG---CCAGCCTTATGAGCTC------TATGACCCTGAAGAGCCTACCTCAGACAGGGCCCCTCCTGCCTTTGGGTCTCGGCTTAACAACAGCAAGCAGGGATTCGGCTGCTCTTGCCGAAGGACAAAGGAGGGACAGGCTGTGCTGTCCGTGAGGCCCCTGCAGGGTCATCAACTGAACGATTTCCGAGGCTTGGCTCCACTCCACCTACCACATATCTGCAGCATCTGTGACAAGAAGGTGTTTGACTTGAAG aaggaatgctggaaatgaggactgatggtctctccatttctcttctccagTGCTGCCAAACTCTTGGATAAGAGCCCTTTCTCTGTCAATAACCAGAATCCCCTGCTGACACTGCCAGCTGATGTTCAACTGGCTCAGATACAGGCTCAACTTACACTTCACCGGCTAGAAATGGCACAAACTGCTGTTACAAATAACACTGCAGCTGCCACAGTCTTAAATGAAGTGCTCTCCAAAGTTGCCATGTCTCAACCTCTTTTTAACCAGCTCCGTCATCCATCTGTGCTTGGTACAGCACATGGTCCTACTGGCGTATCTCAGCA---TGCATCAGTTCCCAGTGCATATTTTCCCTCTACAACTATTGCCTTTTTACCCCCAAGTCAAACAGGGGGCCCAGGCCTTACAGTGGGCATTCCATGCCAGCGCC------CTATGACAGTTCATATGTTCAGTGGGGTGGCACTCCCACAGACCCCTGCCCAACCAGCTGTAATACTTAGTCTGGGGAAGGCTGGACCCACACGAGCTACAACTGGGCTATATGACTATGGCAAAGCCAACTCAGGCCAAGCATATGGTTCTGAAATGGAGGGCCAACAGAGCTTCTTGCCAGCCTCAGCAGCATCAGCTACTGCATCAGGTAGTATGACCTATGAAGGGCACT---GCCAATCAGGGCAAGATGGCCAGGCAGCATTTTCTAAGGACTTCTATGGACCCAACGCCCAAGGGCCACACATAGCTGGTGGATTTCCAGCTGATCAGACTGGGAGCATGAAGGGACACGTTGGTGGGTTGCTACAAGGCACCAACAGCCAGTGGGAGAGGCCCCCTGGCTTCTCAGGTAAAAATAAGCCAGATATCACAGCAAGACCAAGTTTATGGGGCCCACCTGCAAGCCACCAGCCTTATGGACTCTATGAATATGATCCTGAAGAGCCGAAATCAGACAGGGCCCCCCCTGCCTTTGGCTCTCGCCTTAACAATAGAAAGCAGGGATTTGGCTGCTC---ACGTAGGACAAAGGAAGGACAG---GTGTTGTCTGTAAGGCCGTTGCAGAGTTATCAGTTGAATGATTTCCGCAGCTTAGCTCCACTTCATCTACCACATATCTGTAGCATCTGTGGCAAGAAGGTCTTTGACTTTGAGgtataataccaaagaagggctcaggtaaaagaacaatttgtcatgtgccc Alignment from Exonerate_protein2genome TGCTGCCAAGCTCCTGGATAAGAGCCCCTTCTCGGTCAATAACCAGAACCCTCTGCTCACGTCGCCAGCCAGCGTCCAGCTGGCCCAGATACAGGCTCAGCTCACCCTCCATCGGCTGAAGATGGCACAGACCGCAGTCACCAACAACACTGCAGCGGCCACGGTTCTGAACCAAGTCCTCTCCAAAGTGGCCATGTCCCAGCCTCTCTTCAACCAGCTCCGGCATCCGTCTGTGCTCGGCACCGCACATGGCCCTACTGGGGTGTCCCAGCATGCTGCCTCGGTTCCCAGCGCTCACTTCCCCTCAACCGCAATCGCCTTTTCGCCCCCAAGCCAGACAGGAGGCCCAGGGCCTTCTGTGAGCCTCCCCAGCCAGCCCCCCAATGCTATGGTAGTTCATACCTTCAGTGGAGTG---GTACCTCAGACCCCTGCCCAGCCAGCTGTCATCCTTAGCCTTGGGAAGGCTGGGCCTACACCGGCTACTACAGGGTTCTATGACTATGGCAAAGCCAACTCCGGCCAAGCGTATGGTTCTGAAACGGAGGGCCAGCCAGGCTTCTTGCCAGCCTCG---GCCTCAGCCACAGCATCAGGCAGTATGACCTATGAAGGGCACTATAGCCACACAGGGCAGGATGGCCAACCTGCCTTTTCTAAAGACTTCTATGGACCCAATGCCCAAGGGCCACACATAGCAGGTGGATTTCCAGCTGATCAGACTGGGAGCATGAAGGGAGACGTTGGTGGGCTGTTGCAAGGCACCAACAGCCAGTGGGAGAGGCCCCCTGGATTCTCAGGCCAAAACAAGCCCGATATTACAGCGGGACCCAGTTTGTGGGCTCCACCTGCCAGC---CAGCCTTATGAGCTC------TATGACCCTGAAGAGCCTACCTCAGACAGGGCCCCTCCTGCCTTTGGGTCTCGGCTTAACAACAGCAAGCAGGGATTCGGCTGCTCTTGCCGAAGGACAAAGGAGGGACAGGCTGTGCTGTCCGTGAGGCCCCTGCAGGGTCATCAACTGAACGATTTCCGAGGCTTGGCTCCACTCCACCTACCACATATCTGCAGCATCTGTGACAAGAAGGTGTTTGACTTGAAG aaggaatgctggaaatgaggactgatggtctctccatttctcttctccagTGCTGCCAAACTCTTGGATAAGAGCCCTTTCTCTGTCAATAACCAGAATCCCCTGCTGACACTGCCAGCTGATGTTCAACTGGCTCAGATACAGGCTCAACTTACACTTCACCGGCTAGAAATGGCACAAACTGCTGTTACAAATAACACTGCAGCTGCCACAGTCTTAAATGAAGTGCTCTCCAAAGTTGCCATGTCTCAACCTCTTTTTAACCAGCTCCGTCATCCATCTGTGCTTGGTACAGCACATGGTCCTACTGGCGTATCTCAGCAT---GCATCAGTTCCCAGTGCATATTTTCCCTCTACAACTATTGCCTTTTTACCCCCAAGTCAAACAGGGGGCCCAGGCCTTACAGTGGGCATTCCATGCCAGCGCCCT------ATGACAGTTCATATGTTCAGTGGGGTGGCACTCCCACAGACCCCTGCCCAACCAGCTGTAATACTTAGTCTGGGGAAGGCTGGACCCACACGAGCTACAACTGGGCTATATGACTATGGCAAAGCCAACTCAGGCCAAGCATATGGTTCTGAAATGGAGGGCCAACAGAGCTTCTTGCCAGCCTCAGCAGCATCAGCTACTGCATCAGGTAGTATGACCTATGAAGGGCAC---TGCCAATCAGGGCAAGATGGCCAGGCAGCATTTTCTAAGGACTTCTATGGACCCAACGCCCAAGGGCCACACATAGCTGGTGGATTTCCAGCTGATCAGACTGGGAGCATGAAGGGACACGTTGGTGGGTTGCTACAAGGCACCAACAGCCAGTGGGAGAGGCCCCCTGGCTTCTCAGGTAAAAATAAGCCAGATATCACAGCAAGACCAAGTTTATGGGGCCCACCTGCAAGCCACCAGCCTTATGGACTCTATGAATATGATCCTGAAGAGCCGAAATCAGACAGGGCCCCCCCTGCCTTTGGCTCTCGCCTTAACAATAGAAAGCAGGGATTTGGCTGCTCA---CGTAGGACAAAGGAAGGACAG---GTGTTGTCTGTAAGGCCGTTGCAGAGTTATCAGTTGAATGATTTCCGCAGCTTAGCTCCACTTCATCTACCACATATCTGTAGCATCTGTGGCAAGAAGGTCTTTGACTTTGAGgtataataccaaagaagggctcaggtaaaagaacaatttgtcatgtgccc Alignment from Exonerate_coding2genome aaggaatgctggaaatgaggactgatggtctctccatttctcttctccagtgctgccaaactcttggataagagccctttctctgtcaataaccagaatcccctgctgacactgccagctgatgttcaactggctcagatacaggctcaacttacacttcaccggctagaaatggcacaaactgctgttacaaataacactgcagctgccacagtcttaaatgaagtgctctccaaagttgccatgtctcaacctctttttaaccagctccgtcatccatctgtgcttggtacagcacatggtcctactggcgtatctcagcatgcatcagttcccagtgcatattttccctctacaactattgcctttttacccccaagtcaaacagggggcccaggccttacagtgggcattccatgccagcgccctatgacagttcatatgttcagtggggtggcactcccacagacccctgcccaaccagctgtaatacttagtctggggaaggctggacccacacgagctacaactgggctatatgactatggcaaagccaactcaggccaagcatatggttctgaaatggagggccaacagagcttcttgccagcctcagcagcatcagctactgcatcaggtagtatgacctatgaagggcactgccaatcagggcaagatggccaggcagcattttctaaggacttctatggacccaacgcccaagggccacacatagctggtggatttccagctgatcagactgggagcatgaagggacacgttggtgggttgctacaaggcaccaacagccagtgggagaggccccctggcttctcaggtaaaaataagccagatatcacagcaagaccaagtttatggggcccacctgcaagccaccagccttatggactctatgaatatgatcctgaagagccgaaatcagacagggccccccctgcctttggctctcgccttaacaatagaaagcagggatttggctgctcacgtaggacaaaggaaggacaggtgttgtctgtaaggccgttgcagagttatcagttgaatgatttccgcagcttagctccacttcatctaccacatatctgtagcatctgtggcaagaaggtctttgactttgaggtataataccaaagaagggctcaggtaaaagaacaatttgtcatgtgccc Alignment from GeneWise TGCTGCCAAGCTCCTGGATAAGAGCCCCTTCTCGGTCAATAACCAGAACCCTCTGCTCACGTCGCCAGCCAGCGTCCAGCTGGCCCAGATACAGGCTCAGCTCACCCTCCATCGGCTGAAGATGGCACAGACCGCAGTCACCAACAACACTGCAGCGGCCACGGTTCTGAACCAAGTCCTCTCCAAAGTGGCCATGTCCCAGCCTCTCTTCAACCAGCTCCGGCATCCGTCTGTGCTCGGCACCGCACATGGCCCTACTGGGGTGTCCCAGCATGCTGCCTCGGTTCCCAGCGCTCACTTCCCCTCAACCGCAATCGCCTTTTCGCCCCCAAGCCAGACAGGAGGCCCAGGGCCTTCTGTGAGCCTCCCCAGCCAGCCCCCCAATGCTATGGTAGTTCATACCTTCAGTGGAGTG---GTACCTCAGACCCCTGCCCAGCCAGCTGTCATCCTTAGCCTTGGGAAGGCTGGGCCTACACCGGCTACTACAGGGTTCTATGACTATGGCAAAGCCAACTCCGGCCAAGCGTATGGTTCTGAAACGGAGGGCCAGCCAGGCTTCTTGCCAGCCTCGGCC---TCAGCCACAGCATCAGGCAGTATGACCTATGAAGGGCACTATAGCCACACAGGGCAGGATGGCCAACCTGCCTTTTCTAAAGACTTCTATGGACCCAATGCCCAAGGGCCACACATAGCAGGTGGATTTCCAGCTGATCAGACTGGGAGCATGAAGGGAGACGTTGGTGGGCTGTTGCAAGGCACCAACAGCCAGTGGGAGAGGCCCCCTGGATTCTCAGGCCAAAACAAGCCCGATATTACAGCGGGACCCAGTTTGTGGGCTCCACCTGCCAGC---CAGCCTTATGAGCTCTAT------GACCCTGAAGAGCCTACCTCAGACAGGGCCCCTCCTGCCTTTGGGTCTCGGCTTAACAACAGCAAGCAGGGATTCGGCTGCTCTTGCCGAAGGACAAAGGAGGGACAGGCTGTGCTGTCCGTGAGGCCCCTGCAGGGTCATCAACTGAACGATTTCCGAGGCTTGGCTCCACTCCACCTACCACATATCTGCAGCATCTGTGACAAGAAGGTGTTTGACTTGAAG aaggaatgctggaaatgaggactgatggtctctccatttctcttctccagTGCTGCCAAACTCTTGGATAAGAGCCCTTTCTCTGTCAATAACCAGAATCCCCTGCTGACACTGCCAGCTGATGTTCAACTGGCTCAGATACAGGCTCAACTTACACTTCACCGGCTAGAAATGGCACAAACTGCTGTTACAAATAACACTGCAGCTGCCACAGTCTTAAATGAAGTGCTCTCCAAAGTTGCCATGTCTCAACCTCTTTTTAACCAGCTCCGTCATCCATCTGTGCTTGGTACAGCACATGGTCCTACTGGCGTATCTCAGCAT---GCATCAGTTCCCAGTGCATATTTTCCCTCTACAACTATTGCCTTTTTACCCCCAAGTCAAACAGGGGGCCCAGGCCTTACAGTGGGCATTCCATGCCAGCGCCCT------ATGACAGTTCATATGTTCAGTGGGGTGGCACTCCCACAGACCCCTGCCCAACCAGCTGTAATACTTAGTCTGGGGAAGGCTGGACCCACACGAGCTACAACTGGGCTATATGACTATGGCAAAGCCAACTCAGGCCAAGCATATGGTTCTGAAATGGAGGGCCAACAGAGCTTCTTGCCAGCCTCAGCAGCATCAGCTACTGCATCAGGTAGTATGACCTATGAAGGGCAC---TGCCAATCAGGGCAAGATGGCCAGGCAGCATTTTCTAAGGACTTCTATGGACCCAACGCCCAAGGGCCACACATAGCTGGTGGATTTCCAGCTGATCAGACTGGGAGCATGAAGGGACACGTTGGTGGGTTGCTACAAGGCACCAACAGCCAGTGGGAGAGGCCCCCTGGCTTCTCAGGTAAAAATAAGCCAGATATCACAGCAAGACCAAGTTTATGGGGCCCACCTGCAAGCCACCAGCCTTATGGACTCTATGAATATGATCCTGAAGAGCCGAAATCAGACAGGGCCCCCCCTGCCTTTGGCTCTCGCCTTAACAATAGAAAGCAGGGATTTGGCTGCTCA---CGTAGGACAAAGGAAGGACAG---GTGTTGTCTGTAAGGCCGTTGCAGAGTTATCAGTTGAATGATTTCCGCAGCTTAGCTCCACTTCATCTACCACATATCTGTAGCATCTGTGGCAAGAAGGTCTTTGACTTTGAGgtataataccaaagaagggctcaggtaaaagaacaatttgtcatgtgccc #### Rbp4_ID7522_5 --> 2 - 1 Original Alignment acGATGACCACTGGATCATCGACACGGACTACGACACCTTCGCTCTGCAGTACTCCTGCCGCCTGCAGAATCTGGATGGCACCTGTGCAGACAGCTACTCCTTTGTGTTTTCTCGTGACCCCAATGGCCTGAGCCCAGAGACACGGAGGCTGGTGAGGCAGCGGCAGGAGGAGCTGTGCCTAGAGAGGCAGTACAGATGGATTGAACACAATg tggcataccacatgcggctgtttgttgatgagttggcttttctttgacagatGATGACCATTGGATCATTGACACAGATTATGATACATGGGCTCTGCAGTACTCCTGTCGCCTTCAG------GATGGTACCTGTGCAGATAGTTATTCCTTAGTCTTCTCACAT---GCCAATGGCCTTAGCCCAGAGACACGCAGACTGGATAGACAGCGGCAGGAGGAGCTGTGTCTGGAAAGACAGTACAGGTGGATTGAACACAATagtaagaagaagtacaaggaggagcaactggtaccattccttctgaaacta Alignment from CESAR acGATGACCACTGGATCATCGACACGGACTACGACACCTTCGCTCTGCAGTACTCCTGCCGCCTGCAGAATCTGGATGGCACCTGTGCAGACAGCTACTCCTTTGTGTTTTCTCGTGACCCCAATGGCCTGAGCCCAGAGACACGGAGGCTGGTGAGGCAGCGGCAGGAGGAGCTGTGCCTAGAGAGGCAGTACAGATGGATTGAACACAATg tggcataccacatgcggctgtttgttgatgagttggcttttctttgacagatGATGACCATTGGATCATTGACACAGATTATGATACATGGGCTCTGCAGTACTCCTGTCGCCTTCAG------GATGGTACCTGTGCAGATAGTTATTCCTTAGTCTTCTCACAT---GCCAATGGCCTTAGCCCAGAGACACGCAGACTGGATAGACAGCGGCAGGAGGAGCTGTGTCTGGAAAGACAGTACAGGTGGATTGAACACAATagtaagaagaagtacaaggaggagcaactggtaccattccttctgaaacta Alignment from Spaln_aa2Genome ACGATGACCACTGGATCATCGACACGGACTACGACACCTTCGCTCTGCAGTACTCCTGCCGCCTGCAGAATCTGGATGGCACCTGTGCAGACAGCTACTCCTTTGTGTTTTCTCGTGACCCCAATGGCCTGAGCCCAGAGACACGGAGGCTGGTGAGGCAGCGGCAGGAGGAGCTGTGCCTAGAGAGGCAGTACAGATGGATTGAACACAATG tggcataccacatgcggctgtttgttgatgagttggcttttctttgacagATGATGACCATTGGATCATTGACACAGATTATGATACATGGGCTCTGCAGTACTCCTGTCGCCTTCAG------GATGGTACCTGTGCAGATAGTTATTCCTTAGTCTTCTCACAT---GCCAATGGCCTTAGCCCAGAGACACGCAGACTGGATAGACAGCGGCAGGAGGAGCTGTGTCTGGAAAGACAGTACAGGTGGATTGAACACAATAgtaagaagaagtacaaggaggagcaactggtaccattccttctgaaacta Alignment from Spaln_nt2Genome ACGATGACCACTGGATCATCGACACGGACTACGACACCTTCGCTCTGCAGTACTCCTGCCGCCTGCAGAATCTGGATGGCACCTGTGCAGACAGCTACTCCTTTGTGTTTTCTCGTGACCCCAATGGCCTGAGCCCAGAGACACGGAGGCTGGTGAGGCAGCGGCAGGAGGAGCTGTGCCTAGAGAGGCAGTACAGATGGATTGAACACAATG tggcataccacatgcggctgtttgttgatgagttggcttttctttgacagATGATGACCATTGGATCATTGACACAGATTATGATACATGGGCTCTGCAGTACTCCTGTCGCCTT------CAGGATGGTACCTGTGCAGATAGTTATTCCTTAGTCTTCTCACATG---CCAATGGCCTTAGCCCAGAGACACGCAGACTGGATAGACAGCGGCAGGAGGAGCTGTGTCTGGAAAGACAGTACAGGTGGATTGAACACAATAgtaagaagaagtacaaggaggagcaactggtaccattccttctgaaacta Alignment from Pairagon ACGATGACCACTGGATCATCGACACGGACTACGACACCTTCGCTCTGCAGTACTCCTGCCGCCTGCAGAATCTGGATGGCACCTGTGCAGACAGCTACTCCTTTGTGTTTTCTCGTGACCCCAATGGCCTGAGCCCAGAGACACGGAGGCTGGTGAGGCAGCGGCAGGAGGAGCTGTGCCTAGAGAGGCAGTACAGATGGATTGAACACAATG tggcataccacatgcggctgtttgttgatgagttggcttttctttgacagATGATGACCATTGGATCATTGACACAGATTATGATACATGGGCTCTGCAGTACTCCTGTCGCCT------TCAGGATGGTACCTGTGCAGATAGTTATTCCTTAGTCTTCTCACATG---CCAATGGCCTTAGCCCAGAGACACGCAGACTGGATAGACAGCGGCAGGAGGAGCTGTGTCTGGAAAGACAGTACAGGTGGATTGAACACAATAgtaagaagaagtacaaggaggagcaactggtaccattccttctgaaacta Alignment from Exonerate_protein2genome ACGATGACCACTGGATCATCGACACGGACTACGACACCTTCGCTCTGCAGTACTCCTGCCGCCTGCAGAATCTGGATGGCACCTGTGCAGACAGCTACTCCTTTGTGTTTTCTCGTGACCCCAATGGCCTGAGCCCAGAGACACGGAGGCTGGTGAGGCAGCGGCAGGAGGAGCTGTGCCTAGAGAGGCAGTACAGATGGATTGAACACAATG tggcataccacatgcggctgtttgttgatgagttggcttttctttgacagATGATGACCATTGGATCATTGACACAGATTATGATACATGGGCTCTGCAGTACTCCTGTCGCCTTCAG------GATGGTACCTGTGCAGATAGTTATTCCTTAGTCTTCTCACAT---GCCAATGGCCTTAGCCCAGAGACACGCAGACTGGATAGACAGCGGCAGGAGGAGCTGTGTCTGGAAAGACAGTACAGGTGGATTGAACACAATAgtaagaagaagtacaaggaggagcaactggtaccattccttctgaaacta Alignment from Exonerate_coding2genome ACGATGACCACTGGATCATCGACACGGACTACGACACCTTCGCTCTGCAGTACTCCTGCCGCCTGCAGAATCTGGATGGCACCTGTGCAGACAGCTACTCCTTTGTGTTTTCTCGTGACCCCAATGGCCTGAGCCCAGAGACACGGAGGCTGGTGAGGCAGCGGCAGGAGGAGCTGTGCCTAGAGAGGCAGTACAGATGGATTGAACACAATG tggcataccacatgcggctgtttgttgatgagttggcttttctttgacagATGATGACCATTGGATCATTGACACAGATTATGATACATGGGCTCTGCAGTACTCCTGTCGCCTTCAG------GATGGTACCTGTGCAGATAGTTATTCCTTAGTCTTCTCACAT---GCCAATGGCCTTAGCCCAGAGACACGCAGACTGGATAGACAGCGGCAGGAGGAGCTGTGTCTGGAAAGACAGTACAGGTGGATTGAACACAATAgtaagaagaagtacaaggaggagcaactggtaccattccttctgaaacta Alignment from GeneWise ACGATGACCACTGGATCATCGACACGGACTACGACACCTTCGCTCTGCAGTACTCCTGCCGCCTGCAGAATCTGGATGGCACCTGTGCAGACAGCTACTCCTTTGTGTTTTCTCGTGACCCCAATGGCCTGAGCCCAGAGACACGGAGGCTGGTGAGGCAGCGGCAGGAGGAGCTGTGCCTAGAGAGGCAGTACAGATGGATTGAACACAATG tggcataccacatgcggctgtttgttgatgagttggcttttctttgacagATGATGACCATTGGATCATTGACACAGATTATGATACATGGGCTCTGCAGTACTCCTGTCGCCTTCAG------GATGGTACCTGTGCAGATAGTTATTCCTTAGTCTTCTCACAT---GCCAATGGCCTTAGCCCAGAGACACGCAGACTGGATAGACAGCGGCAGGAGGAGCTGTGTCTGGAAAGACAGTACAGGTGGATTGAACACAATAgtaagaagaagtacaaggaggagcaactggtaccattccttctgaaacta #### Rce1_ID575_7 --> 2 - 1 Original Alignment cgTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAg gcagggtgtggtaggtgggattttatgctcttgtactattaactttacagcaTTTCAATTCTCGTACACTGCCATATTTGGTGCTTATACAGCGTTCCTCTTCATCCACACAggtgagttcccacctcaccatgaacgagagcaaaaggttgagatcaccacc Alignment from CESAR cgTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAg gcagggtgtggtaggtgggattttatgctcttgtactattaactttacagcaTTTCAATTCTCGTACACTGCCATATTTGGTGCTTATACAGCGTTCCTCTTCATCCACACAggtgagttcccacctcaccatgaacgagagcaaaaggttgagatcaccacc Alignment from Spaln_aa2Genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG gcagggtgtggtaggtgggattttatgctcttgtactattaactttacagCATTTCAATTCTCGTACACTGCCATATTTGGTGCTTATACAGCGTTCCTCTTCATCCACACAGgtgagttcccacctcaccatgaacgagagcaaaaggttgagatcaccacc Alignment from Spaln_nt2Genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG gcagggtgtggtaggtgggattttatgctcttgtactattaactttacagCATTTCAATTCTCGTACACTGCCATATTTGGTGCTTATACAGCGTTCCTCTTCATCCACACAGgtgagttcccacctcaccatgaacgagagcaaaaggttgagatcaccacc Alignment from Pairagon CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG gcagggtgtggtaggtgggattttatgctcttgtactattaactttacagCATTTCAATTCTCGTACACTGCCATATTTGGTGCTTATACAGCGTTCCTCTTCATCCACACAGgtgagttcccacctcaccatgaacgagagcaaaaggttgagatcaccacc Alignment from Exonerate_protein2genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG gcagggtgtggtaggtgggattttatgctcttgtactattaactttacagCATTTCAATTCTCGTACACTGCCATATTTGGTGCTTATACAGCGTTCCTCTTCATCCACACAGgtgagttcccacctcaccatgaacgagagcaaaaggttgagatcaccacc Alignment from Exonerate_coding2genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG gcagggtgtggtaggtgggattttatgctcttgtactattaactttacagCATTTCAATTCTCGTACACTGCCATATTTGGTGCTTATACAGCGTTCCTCTTCATCCACACAGgtgagttcccacctcaccatgaacgagagcaaaaggttgagatcaccacc Alignment from GeneWise CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG gcagggtgtggtaggtgggattttatgctcttgtactattaactttacagCATTTCAATTCTCGTACACTGCCATATTTGGTGCTTATACAGCGTTCCTCTTCATCCACACAGgtgagttcccacctcaccatgaacgagagcaaaaggttgagatcaccacc #### Rce1_ID578_4 --> 0 - 1 Original Alignment ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGg aattgtgagaagtactgcaccttgtgctttttgtctttatttttgtccagATCCTTTTCCCAGGTCCACTGACACAGCTTTCTATGGACTGTCCCTGTGACCTGACAGATGGACTGAAAGTTGTTCTGggtaagtcccagatcctgctgagaaaacagaatgcaaaagcagtgctaaat Alignment from CESAR ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGg aattgtgagaagtactgcaccttgtgctttttgtctttatttttgtccagATCCTTTTCCCAGGTCCACTGACACAGCTTTCTATGGACTGTCCCTGTGACCTGACAGATGGACTGAAAGTTGTTCTGggtaagtcccagatcctgctgagaaaacagaatgcaaaagcagtgctaaat Alignment from Spaln_aa2Genome ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG aattgtgagaagtactgcaccttgtgctttttgtctttatttttgtccagATCCTTTTCCCAGGTCCACTGACACAGCTTTCTATGGACTGTCCCTGTGACCTGACAGATGGACTGAAAGTTGTTCTGGgtaagtcccagatcctgctgagaaaacagaatgcaaaagcagtgctaaat Alignment from Spaln_nt2Genome ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG aattgtgagaagtactgcaccttgtgctttttgtctttatttttgtccagATCCTTTTCCCAGGTCCACTGACACAGCTTTCTATGGACTGTCCCTGTGACCTGACAGATGGACTGAAAGTTGTTCTGGgtaagtcccagatcctgctgagaaaacagaatgcaaaagcagtgctaaat Alignment from Pairagon ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG aattgtgagaagtactgcaccttgtgctttttgtctttatttttgtccagATCCTTTTCCCAGGTCCACTGACACAGCTTTCTATGGACTGTCCCTGTGACCTGACAGATGGACTGAAAGTTGTTCTGGgtaagtcccagatcctgctgagaaaacagaatgcaaaagcagtgctaaat Alignment from Exonerate_protein2genome ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG aattgtgagaagtactgcaccttgtgctttttgtctttatttttgtccagATCCTTTTCCCAGGTCCACTGACACAGCTTTCTATGGACTGTCCCTGTGACCTGACAGATGGACTGAAAGTTGTTCTGGgtaagtcccagatcctgctgagaaaacagaatgcaaaagcagtgctaaat Alignment from Exonerate_coding2genome ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG aattgtgagaagtactgcaccttgtgctttttgtctttatttttgtccagATCCTTTTCCCAGGTCCACTGACACAGCTTTCTATGGACTGTCCCTGTGACCTGACAGATGGACTGAAAGTTGTTCTGGgtaagtcccagatcctgctgagaaaacagaatgcaaaagcagtgctaaat Alignment from GeneWise ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG aattgtgagaagtactgcaccttgtgctttttgtctttatttttgtccagATCCTTTTCCCAGGTCCACTGACACAGCTTTCTATGGACTGTCCCTGTGACCTGACAGATGGACTGAAAGTTGTTCTGGgtaagtcccagatcctgctgagaaaacagaatgcaaaagcagtgctaaat #### Rcor2_ID2097_8 --> 0 - 0 Original Alignment GTCCAGAGCATGAAGCAGACCAATAGCAGCCTCCGCCAAGCACTGGAGGGCGGCATTGACCCTCTCCGCCCCCCTGAG aagagccttcattggatgcataattctgtgacggtagtcccggtccccagGTGCAGAGTATGAAGCAAACCAATAGCAGTCTCCAGCCAGCACTGAAGGGTGGCATTGATCCCCAACGGCCCCCAGAGgtatgggtttatagctgccagtaaatggcacgatgctgcttgttctcgcg Alignment from CESAR GTCCAGAGCATGAAGCAGACCAATAGCAGCCTCCGCCAAGCACTGGAGGGCGGCATTGACCCTCTCCGCCCCCCTGAG aagagccttcattggatgcataattctgtgacggtagtcccggtccccagGTGCAGAGTATGAAGCAAACCAATAGCAGTCTCCAGCCAGCACTGAAGGGTGGCATTGATCCCCAACGGCCCCCAGAGgtatgggtttatagctgccagtaaatggcacgatgctgcttgttctcgcg Alignment from Spaln_aa2Genome GTCCAGAGCATGAAGCAGACCAATAGCAGCCTCCGCCAAGCACTGGAGGGCGGCATTGACCCTCTCCGCCCCCCTGAG aagagccttcattggatgcataattctgtgacggtagtcccggtccccagGTGCAGAGTATGAAGCAAACCAATAGCAGTCTCCAGCCAGCACTGAAGGGTGGCATTGATCCCCAACGGCCCCCAGAGgtatgggtttatagctgccagtaaatggcacgatgctgcttgttctcgcg Alignment from Spaln_nt2Genome GTCCAGAGCATGAAGCAGACCAATAGCAGCCTCCGCCAAGCACTGGAGGGCGGCATTGACCCTCTCCGCCCCCCTGAG aagagccttcattggatgcataattctgtgacggtagtcccggtccccagGTGCAGAGTATGAAGCAAACCAATAGCAGTCTCCAGCCAGCACTGAAGGGTGGCATTGATCCCCAACGGCCCCCAGAGgtatgggtttatagctgccagtaaatggcacgatgctgcttgttctcgcg Alignment from Pairagon GTCCAGAGCATGAAGCAGACCAATAGCAGCCTCCGCCAAGCACTGGAGGGCGGCATTGACCCTCTCCGCCCCCCTGAG aagagccttcattggatgcataattctgtgacggtagtcccggtccccagGTGCAGAGTATGAAGCAAACCAATAGCAGTCTCCAGCCAGCACTGAAGGGTGGCATTGATCCCCAACGGCCCCCAGAGgtatgggtttatagctgccagtaaatggcacgatgctgcttgttctcgcg Alignment from Exonerate_protein2genome GTCCAGAGCATGAAGCAGACCAATAGCAGCCTCCGCCAAGCACTGGAGGGCGGCATTGACCCTCTCCGCCCCCCTGAG aagagccttcattggatgcataattctgtgacggtagtcccggtccccagGTGCAGAGTATGAAGCAAACCAATAGCAGTCTCCAGCCAGCACTGAAGGGTGGCATTGATCCCCAACGGCCCCCAGAGgtatgggtttatagctgccagtaaatggcacgatgctgcttgttctcgcg Alignment from Exonerate_coding2genome aagagccttcattggatgcataattctgtgacggtagtcccggtccccaggtgcagagtatgaagcaaaccaatagcagtctccagccagcactgaagggtggcattgatccccaacggcccccagaggtatgggtttatagctgccagtaaatggcacgatgctgcttgttctcgcg Alignment from GeneWise GTCCAGAGCATGAAGCAGACCAATAGCAGCCTCCGCCAAGCACTGGAGGGCGGCATTGACCCTCTCCGCCCCCCTGAG aagagccttcattggatgcataattctgtgacggtagtcccggtccccagGTGCAGAGTATGAAGCAAACCAATAGCAGTCTCCAGCCAGCACTGAAGGGTGGCATTGATCCCCAACGGCCCCCAGAGgtatgggtttatagctgccagtaaatggcacgatgctgcttgttctcgcg #### Rela_ID1127_4 --> 0 - 2 Original Alignment ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATag tcagtatcatgtgctgaggtgtcttgtctctctctctctttcctatctagATCAATGGTTACACAGGTCCAGGAACAGTTCGAATCTCCCTGGTTACCAAGGACCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGGAGGACTGTTGGGATGGCTACTATGAGGCTGATCTCTGCCCAGACCGCAGTATTCATaggtagtgtatttgtggtctgaaggtgctggcaggggaatgccagagtacac Alignment from CESAR ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATag tcagtatcatgtgctgaggtgtcttgtctctctctctctttcctatctagATCAATGGTTACACAGGTCCAGGAACAGTTCGAATCTCCCTGGTTACCAAGGACCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGGAGGACTGTTGGGATGGCTACTATGAGGCTGATCTCTGCCCAGACCGCAGTATTCATaggtagtgtatttgtggtctgaaggtgctggcaggggaatgccagagtacac Alignment from Spaln_aa2Genome ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG tcagtatcatgtgctgaggtgtcttgtctctctctctctttcctatctagATCAATGGTTACACAGGTCCAGGAACAGTTCGAATCTCCCTGGTTACCAAGGACCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGGAGGACTGTTGGGATGGCTACTATGAGGCTGATCTCTGCCCAGACCGCAGTATTCATAGgtagtgtatttgtggtctgaaggtgctggcaggggaatgccagagtacac Alignment from Spaln_nt2Genome ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG tcagtatcatgtgctgaggtgtcttgtctctctctctctttcctatctagATCAATGGTTACACAGGTCCAGGAACAGTTCGAATCTCCCTGGTTACCAAGGACCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGGAGGACTGTTGGGATGGCTACTATGAGGCTGATCTCTGCCCAGACCGCAGTATTCATAGgtagtgtatttgtggtctgaaggtgctggcaggggaatgccagagtacac Alignment from Pairagon ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG tcagtatcatgtgctgaggtgtcttgtctctctctctctttcctatctagATCAATGGTTACACAGGTCCAGGAACAGTTCGAATCTCCCTGGTTACCAAGGACCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGGAGGACTGTTGGGATGGCTACTATGAGGCTGATCTCTGCCCAGACCGCAGTATTCATAGgtagtgtatttgtggtctgaaggtgctggcaggggaatgccagagtacac Alignment from Exonerate_protein2genome ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG tcagtatcatgtgctgaggtgtcttgtctctctctctctttcctatctagATCAATGGTTACACAGGTCCAGGAACAGTTCGAATCTCCCTGGTTACCAAGGACCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGGAGGACTGTTGGGATGGCTACTATGAGGCTGATCTCTGCCCAGACCGCAGTATTCATAGgtagtgtatttgtggtctgaaggtgctggcaggggaatgccagagtacac Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG tcagtatcatgtgctgaggtgtcttgtctctctctctctttcctatctagATCAATGGTTACACAGGTCCAGGAACAGTTCGAATCTCCCTGGTTACCAAGGACCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGGAGGACTGTTGGGATGGCTACTATGAGGCTGATCTCTGCCCAGACCGCAGTATTCATAGgtagtgtatttgtggtctgaaggtgctggcaggggaatgccagagtacac #### Rela_ID1128_5 --> 1 - 1 Original Alignment cTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACg aaaacaagactctccttagcaaatctaaacatttccttctttccccaaagcTTTCAGAATTTAGGGATACAGTGTGTGAAGAAGCGAGACCTGGCACAAGCGATAAGTCAGCGAATTCAGACTACCAATAACCCATTTCATggtaattagaagagcagaaaggaattccatcttaatatgaaccataaatct Alignment from CESAR cTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACg aaaacaagactctccttagcaaatctaaacatttccttctttccccaaagcTTTCAGAATTTAGGGATACAGTGTGTGAAGAAGCGAGACCTGGCACAAGCGATAAGTCAGCGAATTCAGACTACCAATAACCCATTTCATggtaattagaagagcagaaaggaattccatcttaatatgaaccataaatct Alignment from Spaln_aa2Genome CTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG aaaacaagactctccttagcaaatctaaacatttccttctttccccaaagCTTTCAGAATTTAGGGATACAGTGTGTGAAGAAGCGAGACCTGGCACAAGCGATAAGTCAGCGAATTCAGACTACCAATAACCCATTTCATGgtaattagaagagcagaaaggaattccatcttaatatgaaccataaatct Alignment from Spaln_nt2Genome CTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG aaaacaagactctccttagcaaatctaaacatttccttctttccccaaagCTTTCAGAATTTAGGGATACAGTGTGTGAAGAAGCGAGACCTGGCACAAGCGATAAGTCAGCGAATTCAGACTACCAATAACCCATTTCATGgtaattagaagagcagaaaggaattccatcttaatatgaaccataaatct Alignment from Pairagon CTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG aaaacaagactctccttagcaaatctaaacatttccttctttccccaaagCTTTCAGAATTTAGGGATACAGTGTGTGAAGAAGCGAGACCTGGCACAAGCGATAAGTCAGCGAATTCAGACTACCAATAACCCATTTCATGgtaattagaagagcagaaaggaattccatcttaatatgaaccataaatct Alignment from Exonerate_protein2genome CTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG aaaacaagactctccttagcaaatctaaacatttccttctttccccaaagCTTTCAGAATTTAGGGATACAGTGTGTGAAGAAGCGAGACCTGGCACAAGCGATAAGTCAGCGAATTCAGACTACCAATAACCCATTTCATGgtaattagaagagcagaaaggaattccatcttaatatgaaccataaatct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG aaaacaagactctccttagcaaatctaaacatttccttctttccccaaagCTTTCAGAATTTAGGGATACAGTGTGTGAAGAAGCGAGACCTGGCACAAGCGATAAGTCAGCGAATTCAGACTACCAATAACCCATTTCATGgtaattagaagagcagaaaggaattccatcttaatatgaaccataaatct #### Rfk_ID4224_2 --> 2 - 0 Original Alignment ccAATTTTCCTGAACAAGTGGTGGACAATCTTCCAGCTGATGTGTCTACTGGCATTTATTATGGTTGGGCCAGCGTTGGGAGCGGCGATGTCCATAAAATGGTGGTGAGCATTGGATGGAACCCGTACTATAAGAATGTGAAAAAGTCCATG tatgaatataggggccactcagggtaaaccacggccccttctctctgtagccAACTTCCCTGAGCAAGTAGTAGACAATCTTCCAGCTGATGTATCTACTGGTATTTATTATGGTTGGGCTAGTATAGGGAGTGGTGATGTCCATAAGATGGTAGTGAGTATTGGATGGAACCCATACTATAAGAATGTCAAGAAGTCTATGgtaagtgcagggccgacccttttaaatctaactatacttatgatcaccag Alignment from CESAR ccAATTTTCCTGAACAAGTGGTGGACAATCTTCCAGCTGATGTGTCTACTGGCATTTATTATGGTTGGGCCAGCGTTGGGAGCGGCGATGTCCATAAAATGGTGGTGAGCATTGGATGGAACCCGTACTATAAGAATGTGAAAAAGTCCATG tatgaatataggggccactcagggtaaaccacggccccttctctctgtagccAACTTCCCTGAGCAAGTAGTAGACAATCTTCCAGCTGATGTATCTACTGGTATTTATTATGGTTGGGCTAGTATAGGGAGTGGTGATGTCCATAAGATGGTAGTGAGTATTGGATGGAACCCATACTATAAGAATGTCAAGAAGTCTATGgtaagtgcagggccgacccttttaaatctaactatacttatgatcaccag Alignment from Spaln_aa2Genome CCAATTTTCCTGAACAAGTGGTGGACAATCTTCCAGCTGATGTGTCTACTGGCATTTATTATGGTTGGGCCAGCGTTGGGAGCGGCGATGTCCATAAAATGGTGGTGAGCATTGGATGGAACCCGTACTATAAGAATGTGAAAAAGTCCATG tatgaatataggggccactcagggtaaaccacggccccttctctctgtagCCAACTTCCCTGAGCAAGTAGTAGACAATCTTCCAGCTGATGTATCTACTGGTATTTATTATGGTTGGGCTAGTATAGGGAGTGGTGATGTCCATAAGATGGTAGTGAGTATTGGATGGAACCCATACTATAAGAATGTCAAGAAGTCTATGgtaagtgcagggccgacccttttaaatctaactatacttatgatcaccag Alignment from Spaln_nt2Genome CCAATTTTCCTGAACAAGTGGTGGACAATCTTCCAGCTGATGTGTCTACTGGCATTTATTATGGTTGGGCCAGCGTTGGGAGCGGCGATGTCCATAAAATGGTGGTGAGCATTGGATGGAACCCGTACTATAAGAATGTGAAAAAGTCCATG tatgaatataggggccactcagggtaaaccacggccccttctctctgtagCCAACTTCCCTGAGCAAGTAGTAGACAATCTTCCAGCTGATGTATCTACTGGTATTTATTATGGTTGGGCTAGTATAGGGAGTGGTGATGTCCATAAGATGGTAGTGAGTATTGGATGGAACCCATACTATAAGAATGTCAAGAAGTCTATGgtaagtgcagggccgacccttttaaatctaactatacttatgatcaccag Alignment from Pairagon CCAATTTTCCTGAACAAGTGGTGGACAATCTTCCAGCTGATGTGTCTACTGGCATTTATTATGGTTGGGCCAGCGTTGGGAGCGGCGATGTCCATAAAATGGTGGTGAGCATTGGATGGAACCCGTACTATAAGAATGTGAAAAAGTCCATG tatgaatataggggccactcagggtaaaccacggccccttctctctgtagCCAACTTCCCTGAGCAAGTAGTAGACAATCTTCCAGCTGATGTATCTACTGGTATTTATTATGGTTGGGCTAGTATAGGGAGTGGTGATGTCCATAAGATGGTAGTGAGTATTGGATGGAACCCATACTATAAGAATGTCAAGAAGTCTATGgtaagtgcagggccgacccttttaaatctaactatacttatgatcaccag Alignment from Exonerate_protein2genome CCAATTTTCCTGAACAAGTGGTGGACAATCTTCCAGCTGATGTGTCTACTGGCATTTATTATGGTTGGGCCAGCGTTGGGAGCGGCGATGTCCATAAAATGGTGGTGAGCATTGGATGGAACCCGTACTATAAGAATGTGAAAAAGTCCATG tatgaatataggggccactcagggtaaaccacggccccttctctctgtagCCAACTTCCCTGAGCAAGTAGTAGACAATCTTCCAGCTGATGTATCTACTGGTATTTATTATGGTTGGGCTAGTATAGGGAGTGGTGATGTCCATAAGATGGTAGTGAGTATTGGATGGAACCCATACTATAAGAATGTCAAGAAGTCTATGgtaagtgcagggccgacccttttaaatctaactatacttatgatcaccag Alignment from Exonerate_coding2genome GGTGGTGCGTGGCTTCGGCCGCGGCTCCAAGCAACTGGGCATCCCCACAGCCAATTTTCCTGAACAAGTGGTGGACAATCTTCCAGCTGATGTGTCTACTGGCATTTATTATGGTTGGGCCAGCGTTGGGAGCGGCGATGTCCATAAAATGGTGGTGAGCATTGGATGGAACCCGTACTATAAGAATGTGAAAAAGTCCATG TATGAATATAGGGGCCACTCAGGGTAAACCACGGCCCCTTCTCTCTGTAGCCAACTTCCCTGAGCAAGTAGTAGACAATCTTCCAGCTGATGTATCTACTGGTATTTATTATGGTTGGGCTAGTATAGGGAGTGGTGATGTCCATAAGATGGTAGTGAGTATTGGATGGAACCCATACTATAAGAATGTCAAGAAGTCTATGgtaagtgcagggccgacccttttaaatctaactatacttatgatcaccag Alignment from GeneWise CCAATTTTCCTGAACAAGTGGTGGACAATCTTCCAGCTGATGTGTCTACTGGCATTTATTATGGTTGGGCCAGCGTTGGGAGCGGCGATGTCCATAAAATGGTGGTGAGCATTGGATGGAACCCGTACTATAAGAATGTGAAAAAGTCCATG tatgaatataggggccactcagggtaaaccacggccccttctctctgtagCCAACTTCCCTGAGCAAGTAGTAGACAATCTTCCAGCTGATGTATCTACTGGTATTTATTATGGTTGGGCTAGTATAGGGAGTGGTGATGTCCATAAGATGGTAGTGAGTATTGGATGGAACCCATACTATAAGAATGTCAAGAAGTCTATGgtaagtgcagggccgacccttttaaatctaactatacttatgatcaccag #### Rfk_ID4225_3 --> 0 - 1 Original Alignment GAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCCATTGTTGGCTATCTCAGACCTGAAAAGAACTTTGATTCTTTAg aaaaatctcacctaggccacctgaatgtaaatttatgcttcctttcgcagGAAACACACATCATCCATACCTTCAAGGAGGATTTCTATGGGGAGATTCTCAATGTGGCTATCGTTGGATATTTGAAACCGGAAAAGAACTTTGATTCTTTAggtaaaagttatatattaaacgtaggcattatgagagcacctgcaagagtg Alignment from CESAR GAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCCATTGTTGGCTATCTCAGACCTGAAAAGAACTTTGATTCTTTAg aaaaatctcacctaggccacctgaatgtaaatttatgcttcctttcgcagGAAACACACATCATCCATACCTTCAAGGAGGATTTCTATGGGGAGATTCTCAATGTGGCTATCGTTGGATATTTGAAACCGGAAAAGAACTTTGATTCTTTAggtaaaagttatatattaaacgtaggcattatgagagcacctgcaagagtg Alignment from Spaln_aa2Genome GAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCCATTGTTGGCTATCTCAGACCTGAAAAGAACTTTGATTCTTTAG aaaaatctcacctaggccacctgaatgtaaatttatgcttcctttcgcagGAAACACACATCATCCATACCTTCAAGGAGGATTTCTATGGGGAGATTCTCAATGTGGCTATCGTTGGATATTTGAAACCGGAAAAGAACTTTGATTCTTTAGgtaaaagttatatattaaacgtaggcattatgagagcacctgcaagagtg Alignment from Spaln_nt2Genome GAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCCATTGTTGGCTATCTCAGACCTGAAAAGAACTTTGATTCTTTAG aaaaatctcacctaggccacctgaatgtaaatttatgcttcctttcgcagGAAACACACATCATCCATACCTTCAAGGAGGATTTCTATGGGGAGATTCTCAATGTGGCTATCGTTGGATATTTGAAACCGGAAAAGAACTTTGATTCTTTAGgtaaaagttatatattaaacgtaggcattatgagagcacctgcaagagtg Alignment from Pairagon GAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCCATTGTTGGCTATCTCAGACCTGAAAAGAACTTTGATTCTTTAG aaaaatctcacctaggccacctgaatgtaaatttatgcttcctttcgcagGAAACACACATCATCCATACCTTCAAGGAGGATTTCTATGGGGAGATTCTCAATGTGGCTATCGTTGGATATTTGAAACCGGAAAAGAACTTTGATTCTTTAGgtaaaagttatatattaaacgtaggcattatgagagcacctgcaagagtg Alignment from Exonerate_protein2genome GAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCCATTGTTGGCTATCTCAGACCTGAAAAGAACTTTGATTCTTTAG aaaaatctcacctaggccacctgaatgtaaatttatgcttcctttcgcagGAAACACACATCATCCATACCTTCAAGGAGGATTTCTATGGGGAGATTCTCAATGTGGCTATCGTTGGATATTTGAAACCGGAAAAGAACTTTGATTCTTTAGgtaaaagttatatattaaacgtaggcattatgagagcacctgcaagagtg Alignment from Exonerate_coding2genome GAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCCATTGTTGGCTATCTCAGACCTGAAAAGAACTTTGATTCTTTAG aaaaatctcacctaggccacctgaatgtaaatttatgcttcctttcgcagGAAACACACATCATCCATACCTTCAAGGAGGATTTCTATGGGGAGATTCTCAATGTGGCTATCGTTGGATATTTGAAACCGGAAAAGAACTTTGATTCTTTAGgtaaaagttatatattaaacgtaggcattatgagagcacctgcaagagtg Alignment from GeneWise GAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCCATTGTTGGCTATCTCAGACCTGAAAAGAACTTTGATTCTTTAG aaaaatctcacctaggccacctgaatgtaaatttatgcttcctttcgcagGAAACACACATCATCCATACCTTCAAGGAGGATTTCTATGGGGAGATTCTCAATGTGGCTATCGTTGGATATTTGAAACCGGAAAAGAACTTTGATTCTTTAGgtaaaagttatatattaaacgtaggcattatgagagcacctgcaagagtg #### Rfx3_ID5889_10 --> 1 - 1 Original Alignment cAATCTGAGTGAAATAGAAAGTCGACTTCCGAAAGCAAAGCTGATAACTCTGTGCAAACATGAGTCTATCCTGAAATGGATGTGTAACTGTGACCATGGGATGTACCAGGCTTTGGTGGAGATTCTCATCCCCGACGTCCTTAGACCCATTCCTa gagcagaattaatctcaatgacaatttagctgtcccccatccccccacagcAATCTGAGTGAAAGAGAAAGTCGACTTCCAAAAGCAAAGCTGGTAACTCTGTGCAAACATGAGTCTATCCTTAAATGGATGTGTAACTGTGACCATGGGATGTACCAGGCCTTGGTGGAGATTCTCATCCCTGATGTCCTTAGGCTGATCCCTagtaggttacattgagactgactaaagatattgaaacatcatactgctcca Alignment from CESAR cAATCTGAGTGAAATAGAAAGTCGACTTCCGAAAGCAAAGCTGATAACTCTGTGCAAACATGAGTCTATCCTGAAATGGATGTGTAACTGTGACCATGGGATGTACCAGGCTTTGGTGGAGATTCTCATCCCCGACGTCCTTAGACCCATTCCTa gagcagaattaatctcaatgacaatttagctgtcccccatccccccacagcAATCTGAGTGAAAGAGAAAGTCGACTTCCAAAAGCAAAGCTGGTAACTCTGTGCAAACATGAGTCTATCCTTAAATGGATGTGTAACTGTGACCATGGGATGTACCAGGCCTTGGTGGAGATTCTCATCCCTGATGTCCTTAGGCTGATCCCTagtaggttacattgagactgactaaagatattgaaacatcatactgctcca Alignment from Spaln_aa2Genome CAATCTGAGTGAAATAGAAAGTCGACTTCCGAAAGCAAAGCTGATAACTCTGTGCAAACATGAGTCTATCCTGAAATGGATGTGTAACTGTGACCATGGGATGTACCAGGCTTTGGTGGAGATTCTCATCCCCGACGTCCTTAGACCCATTCCTA gagcagaattaatctcaatgacaatttagctgtcccccatccccccacagCAATCTGAGTGAAAGAGAAAGTCGACTTCCAAAAGCAAAGCTGGTAACTCTGTGCAAACATGAGTCTATCCTTAAATGGATGTGTAACTGTGACCATGGGATGTACCAGGCCTTGGTGGAGATTCTCATCCCTGATGTCCTTAGGCTGATCCCTAgtaggttacattgagactgactaaagatattgaaacatcatactgctcca Alignment from Spaln_nt2Genome CAATCTGAGTGAAATAGAAAGTCGACTTCCGAAAGCAAAGCTGATAACTCTGTGCAAACATGAGTCTATCCTGAAATGGATGTGTAACTGTGACCATGGGATGTACCAGGCTTTGGTGGAGATTCTCATCCCCGACGTCCTTAGACCCATTCCTA gagcagaattaatctcaatgacaatttagctgtcccccatccccccacagCAATCTGAGTGAAAGAGAAAGTCGACTTCCAAAAGCAAAGCTGGTAACTCTGTGCAAACATGAGTCTATCCTTAAATGGATGTGTAACTGTGACCATGGGATGTACCAGGCCTTGGTGGAGATTCTCATCCCTGATGTCCTTAGGCTGATCCCTAgtaggttacattgagactgactaaagatattgaaacatcatactgctcca Alignment from Pairagon CAATCTGAGTGAAATAGAAAGTCGACTTCCGAAAGCAAAGCTGATAACTCTGTGCAAACATGAGTCTATCCTGAAATGGATGTGTAACTGTGACCATGGGATGTACCAGGCTTTGGTGGAGATTCTCATCCCCGACGTCCTTAGACCCATTCCTA gagcagaattaatctcaatgacaatttagctgtcccccatccccccacagCAATCTGAGTGAAAGAGAAAGTCGACTTCCAAAAGCAAAGCTGGTAACTCTGTGCAAACATGAGTCTATCCTTAAATGGATGTGTAACTGTGACCATGGGATGTACCAGGCCTTGGTGGAGATTCTCATCCCTGATGTCCTTAGGCTGATCCCTAgtaggttacattgagactgactaaagatattgaaacatcatactgctcca Alignment from Exonerate_protein2genome CAATCTGAGTGAAATAGAAAGTCGACTTCCGAAAGCAAAGCTGATAACTCTGTGCAAACATGAGTCTATCCTGAAATGGATGTGTAACTGTGACCATGGGATGTACCAGGCTTTGGTGGAGATTCTCATCCCCGACGTCCTTAGACCCATTCCTA gagcagaattaatctcaatgacaatttagctgtcccccatccccccacagCAATCTGAGTGAAAGAGAAAGTCGACTTCCAAAAGCAAAGCTGGTAACTCTGTGCAAACATGAGTCTATCCTTAAATGGATGTGTAACTGTGACCATGGGATGTACCAGGCCTTGGTGGAGATTCTCATCCCTGATGTCCTTAGGCTGATCCCTAgtaggttacattgagactgactaaagatattgaaacatcatactgctcca Alignment from Exonerate_coding2genome CAATCTGAGTGAAATAGAAAGTCGACTTCCGAAAGCAAAGCTGATAACTCTGTGCAAACATGAGTCTATCCTGAAATGGATGTGTAACTGTGACCATGGGATGTACCAGGCTTTGGTGGAGATTCTCATCCCCGACGTCCTTAGACCCATTCCTA gagcagaattaatctcaatgacaatttagctgtcccccatccccccacagCAATCTGAGTGAAAGAGAAAGTCGACTTCCAAAAGCAAAGCTGGTAACTCTGTGCAAACATGAGTCTATCCTTAAATGGATGTGTAACTGTGACCATGGGATGTACCAGGCCTTGGTGGAGATTCTCATCCCTGATGTCCTTAGGCTGATCCCTAgtaggttacattgagactgactaaagatattgaaacatcatactgctcca Alignment from GeneWise CAATCTGAGTGAAATAGAAAGTCGACTTCCGAAAGCAAAGCTGATAACTCTGTGCAAACATGAGTCTATCCTGAAATGGATGTGTAACTGTGACCATGGGATGTACCAGGCTTTGGTGGAGATTCTCATCCCCGACGTCCTTAGACCCATTCCTA gagcagaattaatctcaatgacaatttagctgtcccccatccccccacagCAATCTGAGTGAAAGAGAAAGTCGACTTCCAAAAGCAAAGCTGGTAACTCTGTGCAAACATGAGTCTATCCTTAAATGGATGTGTAACTGTGACCATGGGATGTACCAGGCCTTGGTGGAGATTCTCATCCCTGATGTCCTTAGGCTGATCCCTAgtaggttacattgagactgactaaagatattgaaacatcatactgctcca #### Rfx3_ID5890_9 --> 0 - 2 Original Alignment GCAATACTGGACGTTGTTGTGAATCTTCAGTTTAGCCTGATAGAAAAACTGTGGCAAACATTCTGGCGCTATTCCCCATCTACTCCAGCCGACGGCACTACCATCACGGAATCAag taacagtaccggtaattgttagggcttttctatgattttacctttcccagGCAATACTGGATGTTGTTGTGAATCTTCAGTTTAGCCTAATAGAAAAACTGTGGCAAACATTCTGGCGCTATTCCCCATCTACTCCAGCTGATGGCACTACCATCACAGAATCAaggtaagttaaaatagctgctcctaatatatttccatgaccatgctgaaata Alignment from CESAR GCAATACTGGACGTTGTTGTGAATCTTCAGTTTAGCCTGATAGAAAAACTGTGGCAAACATTCTGGCGCTATTCCCCATCTACTCCAGCCGACGGCACTACCATCACGGAATCAag taacagtaccggtaattgttagggcttttctatgattttacctttcccagGCAATACTGGATGTTGTTGTGAATCTTCAGTTTAGCCTAATAGAAAAACTGTGGCAAACATTCTGGCGCTATTCCCCATCTACTCCAGCTGATGGCACTACCATCACAGAATCAaggtaagttaaaatagctgctcctaatatatttccatgaccatgctgaaata Alignment from Spaln_aa2Genome GCAATACTGGACGTTGTTGTGAATCTTCAGTTTAGCCTGATAGAAAAACTGTGGCAAACATTCTGGCGCTATTCCCCATCTACTCCAGCCGACGGCACTACCATCACGGAATCAAG taacagtaccggtaattgttagggcttttctatgattttacctttcccagGCAATACTGGATGTTGTTGTGAATCTTCAGTTTAGCCTAATAGAAAAACTGTGGCAAACATTCTGGCGCTATTCCCCATCTACTCCAGCTGATGGCACTACCATCACAGAATCAAGgtaagttaaaatagctgctcctaatatatttccatgaccatgctgaaata Alignment from Spaln_nt2Genome GCAATACTGGACGTTGTTGTGAATCTTCAGTTTAGCCTGATAGAAAAACTGTGGCAAACATTCTGGCGCTATTCCCCATCTACTCCAGCCGACGGCACTACCATCACGGAATCAAG taacagtaccggtaattgttagggcttttctatgattttacctttcccagGCAATACTGGATGTTGTTGTGAATCTTCAGTTTAGCCTAATAGAAAAACTGTGGCAAACATTCTGGCGCTATTCCCCATCTACTCCAGCTGATGGCACTACCATCACAGAATCAAGgtaagttaaaatagctgctcctaatatatttccatgaccatgctgaaata Alignment from Pairagon GCAATACTGGACGTTGTTGTGAATCTTCAGTTTAGCCTGATAGAAAAACTGTGGCAAACATTCTGGCGCTATTCCCCATCTACTCCAGCCGACGGCACTACCATCACGGAATCAAG taacagtaccggtaattgttagggcttttctatgattttacctttcccagGCAATACTGGATGTTGTTGTGAATCTTCAGTTTAGCCTAATAGAAAAACTGTGGCAAACATTCTGGCGCTATTCCCCATCTACTCCAGCTGATGGCACTACCATCACAGAATCAAGgtaagttaaaatagctgctcctaatatatttccatgaccatgctgaaata Alignment from Exonerate_protein2genome GCAATACTGGACGTTGTTGTGAATCTTCAGTTTAGCCTGATAGAAAAACTGTGGCAAACATTCTGGCGCTATTCCCCATCTACTCCAGCCGACGGCACTACCATCACGGAATCAAG taacagtaccggtaattgttagggcttttctatgattttacctttcccagGCAATACTGGATGTTGTTGTGAATCTTCAGTTTAGCCTAATAGAAAAACTGTGGCAAACATTCTGGCGCTATTCCCCATCTACTCCAGCTGATGGCACTACCATCACAGAATCAAGgtaagttaaaatagctgctcctaatatatttccatgaccatgctgaaata Alignment from Exonerate_coding2genome GCAATACTGGACGTTGTTGTGAATCTTCAGTTTAGCCTGATAGAAAAACTGTGGCAAACATTCTGGCGCTATTCCCCATCTACTCCAGCCGACGGCACTACCATCACGGAATCAAG taacagtaccggtaattgttagggcttttctatgattttacctttcccagGCAATACTGGATGTTGTTGTGAATCTTCAGTTTAGCCTAATAGAAAAACTGTGGCAAACATTCTGGCGCTATTCCCCATCTACTCCAGCTGATGGCACTACCATCACAGAATCAAGgtaagttaaaatagctgctcctaatatatttccatgaccatgctgaaata Alignment from GeneWise GCAATACTGGACGTTGTTGTGAATCTTCAGTTTAGCCTGATAGAAAAACTGTGGCAAACATTCTGGCGCTATTCCCCATCTACTCCAGCCGACGGCACTACCATCACGGAATCAAG taacagtaccggtaattgttagggcttttctatgattttacctttcccagGCAATACTGGATGTTGTTGTGAATCTTCAGTTTAGCCTAATAGAAAAACTGTGGCAAACATTCTGGCGCTATTCCCCATCTACTCCAGCTGATGGCACTACCATCACAGAATCAAGgtaagttaaaatagctgctcctaatatatttccatgaccatgctgaaata #### Rhod_ID527_4 --> 0 - 0 Original Alignment TGGTACCCAGAGGTGACACATTTCTGCAAGGGAGTGCCCATCATTGTTGTGGGCTGCAAGATAGACCTGCGTAAGGACAAGGTGCTGGTGAACAACCTGCGGAAGAAAAGACTGGAGCCCGTGACCTACCACAGG agcaatctatcctaactgggaaggaggtccctctccctgtccgcccgcagTGGTATCCAGAGGTGACATATTTCTGTAAG---GTGCCAATCATTGTTGTTGGTTGCAAGATGGACCTGAGGAAGGACAAAGTGCTGGTTATTAACCTACGGAAAAAACGACTGGAGCCCGTGACCTATCACCAGgtagtgaggaagccagttatccttggtatcttcctgctctgacagtgtcg Alignment from CESAR TGGTACCCAGAGGTGACACATTTCTGCAAGGGAGTGCCCATCATTGTTGTGGGCTGCAAGATAGACCTGCGTAAGGACAAGGTGCTGGTGAACAACCTGCGGAAGAAAAGACTGGAGCCCGTGACCTACCACAGG agcaatctatcctaactgggaaggaggtccctctccctgtccgcccgcagTGGTATCCAGAGGTGACATATTTCTGTAAG---GTGCCAATCATTGTTGTTGGTTGCAAGATGGACCTGAGGAAGGACAAAGTGCTGGTTATTAACCTACGGAAAAAACGACTGGAGCCCGTGACCTATCACCAGgtagtgaggaagccagttatccttggtatcttcctgctctgacagtgtcg Alignment from Spaln_aa2Genome TGGTACCCAGAGGTGACACATTTCTGCAAGGGAGTGCCCATCATTGTTGTGGGCTGCAAGATAGACCTGCGTAAGGACAAGGTGCTGGTGAACAACCTGCGGAAGAAAAGACTGGAGCCCGTGACCTACCACAGG agcaatctatcctaactgggaaggaggtccctctccctgtccgcccgcagTGGTATCCAGAGGTGACATATTTCTGTAAG---GTGCCAATCATTGTTGTTGGTTGCAAGATGGACCTGAGGAAGGACAAAGTGCTGGTTATTAACCTACGGAAAAAACGACTGGAGCCCGTGACCTATCACCAGgtagtgaggaagccagttatccttggtatcttcctgctctgacagtgtcg Alignment from Spaln_nt2Genome TGGTACCCAGAGGTGACACATTTCTGCAAGGGAGTGCCCATCATTGTTGTGGGCTGCAAGATAGACCTGCGTAAGGACAAGGTGCTGGTGAACAACCTGCGGAAGAAAAGACTGGAGCCCGTGACCTACCACAGG agcaatctatcctaactgggaaggaggtccctctccctgtccgcccgcagTGGTATCCAGAGGTGACATATTTCTGTAAG---GTGCCAATCATTGTTGTTGGTTGCAAGATGGACCTGAGGAAGGACAAAGTGCTGGTTATTAACCTACGGAAAAAACGACTGGAGCCCGTGACCTATCACCAGgtagtgaggaagccagttatccttggtatcttcctgctctgacagtgtcg Alignment from Pairagon TGGTACCCAGAGGTGACACATTTCTGCAAGGGAGTGCCCATCATTGTTGTGGGCTGCAAGATAGACCTGCGTAAGGACAAGGTGCTGGTGAACAACCTGCGGAAGAAAAGACTGGAGCCCGTGACCTACCACAGG agcaatctatcctaactgggaaggaggtccctctccctgtccgcccgcagTGGTATCCAGAGGTGACATATTTCTGTAAG---GTGCCAATCATTGTTGTTGGTTGCAAGATGGACCTGAGGAAGGACAAAGTGCTGGTTATTAACCTACGGAAAAAACGACTGGAGCCCGTGACCTATCACCAGgtagtgaggaagccagttatccttggtatcttcctgctctgacagtgtcg Alignment from Exonerate_protein2genome TGGTACCCAGAGGTGACACATTTCTGCAAGGGAGTGCCCATCATTGTTGTGGGCTGCAAGATAGACCTGCGTAAGGACAAGGTGCTGGTGAACAACCTGCGGAAGAAAAGACTGGAGCCCGTGACCTACCACAGG agcaatctatcctaactgggaaggaggtccctctccctgtccgcccgcagTGGTATCCAGAGGTGACATATTTCTGTAAG---GTGCCAATCATTGTTGTTGGTTGCAAGATGGACCTGAGGAAGGACAAAGTGCTGGTTATTAACCTACGGAAAAAACGACTGGAGCCCGTGACCTATCACCAGgtagtgaggaagccagttatccttggtatcttcctgctctgacagtgtcg Alignment from Exonerate_coding2genome TGGTACCCAGAGGTGACACATTTCTGCAAGGGAGTGCCCATCATTGTTGTGGGCTGCAAGATAGACCTGCGTAAGGACAAGGTGCTGGTGAACAACCTGCGGAAGAAAAGACTGGAGCCCGTGACCTACCACAGG agcaatctatcctaactgggaaggaggtccctctccctgtccgcccgcagTGGTATCCAGAGGTGACATATTTCTGTAAG---GTGCCAATCATTGTTGTTGGTTGCAAGATGGACCTGAGGAAGGACAAAGTGCTGGTTATTAACCTACGGAAAAAACGACTGGAGCCCGTGACCTATCACCAGgtagtgaggaagccagttatccttggtatcttcctgctctgacagtgtcg Alignment from GeneWise TGGTACCCAGAGGTGACACATTTCTGCAAGGGAGTGCCCATCATTGTTGTGGGCTGCAAGATAGACCTGCGTAAGGACAAGGTGCTGGTGAACAACCTGCGGAAGAAAAGACTGGAGCCCGTGACCTACCACAGG agcaatctatcctaactgggaaggaggtccctctccctgtccgcccgcagTGGTATCCAGAGGTGACATATTTCTGTAAG---GTGCCAATCATTGTTGTTGGTTGCAAGATGGACCTGAGGAAGGACAAAGTGCTGGTTATTAACCTACGGAAAAAACGACTGGAGCCCGTGACCTATCACCAGgtagtgaggaagccagttatccttggtatcttcctgctctgacagtgtcg #### Rhod_ID529_2 --> 0 - 1 Original Alignment AGCTACAGTCCCACAGTGTTTGAGCGCTATAATGCCACTCTGCAGATGAAGGGTAAACCTGTGCACCTCCAAATCTGGGACACAGCCg cttactagccactgcttaagagttttcagccagggtctctttgcctttagAGTTACAGTCCAACGGTATTTGAGCGTTACAATGCCACTCTGCAGATGAAGGGTAAGCCTGTGCACCTCCAAATCTGGGACGCAGCTggtaagagggcgtttgtttgtgtgaaccagctccttctaataattcctaga Alignment from CESAR AGCTACAGTCCCACAGTGTTTGAGCGCTATAATGCCACTCTGCAGATGAAGGGTAAACCTGTGCACCTCCAAATCTGGGACACAGCCg cttactagccactgcttaagagttttcagccagggtctctttgcctttagAGTTACAGTCCAACGGTATTTGAGCGTTACAATGCCACTCTGCAGATGAAGGGTAAGCCTGTGCACCTCCAAATCTGGGACGCAGCTggtaagagggcgtttgtttgtgtgaaccagctccttctaataattcctaga Alignment from Spaln_aa2Genome AGCTACAGTCCCACAGTGTTTGAGCGCTATAATGCCACTCTGCAGATGAAGGGTAAACCTGTGCACCTCCAAATCTGGGACACAGCCG cttactagccactgcttaagagttttcagccagggtctctttgcctttagAGTTACAGTCCAACGGTATTTGAGCGTTACAATGCCACTCTGCAGATGAAGGGTAAGCCTGTGCACCTCCAAATCTGGGACGCAGCTGgtaagagggcgtttgtttgtgtgaaccagctccttctaataattcctaga Alignment from Spaln_nt2Genome AGCTACAGTCCCACAGTGTTTGAGCGCTATAATGCCACTCTGCAGATGAAGGGTAAACCTGTGCACCTCCAAATCTGGGACACAGCCG cttactagccactgcttaagagttttcagccagggtctctttgcctttagAGTTACAGTCCAACGGTATTTGAGCGTTACAATGCCACTCTGCAGATGAAGGGTAAGCCTGTGCACCTCCAAATCTGGGACGCAGCTGgtaagagggcgtttgtttgtgtgaaccagctccttctaataattcctaga Alignment from Pairagon AGCTACAGTCCCACAGTGTTTGAGCGCTATAATGCCACTCTGCAGATGAAGGGTAAACCTGTGCACCTCCAAATCTGGGACACAGCCG cttactagccactgcttaagagttttcagccagggtctctttgcctttagAGTTACAGTCCAACGGTATTTGAGCGTTACAATGCCACTCTGCAGATGAAGGGTAAGCCTGTGCACCTCCAAATCTGGGACGCAGCTGgtaagagggcgtttgtttgtgtgaaccagctccttctaataattcctaga Alignment from Exonerate_protein2genome AGCTACAGTCCCACAGTGTTTGAGCGCTATAATGCCACTCTGCAGATGAAGGGTAAACCTGTGCACCTCCAAATCTGGGACACAGCCG cttactagccactgcttaagagttttcagccagggtctctttgcctttagAGTTACAGTCCAACGGTATTTGAGCGTTACAATGCCACTCTGCAGATGAAGGGTAAGCCTGTGCACCTCCAAATCTGGGACGCAGCTGgtaagagggcgtttgtttgtgtgaaccagctccttctaataattcctaga Alignment from Exonerate_coding2genome AGCTACAGTCCCACAGTGTTTGAGCGCTATAATGCCACTCTGCAGATGAAGGGTAAACCTGTGCACCTCCAAATCTGGGACACAGCCG cttactagccactgcttaagagttttcagccagggtctctttgcctttagAGTTACAGTCCAACGGTATTTGAGCGTTACAATGCCACTCTGCAGATGAAGGGTAAGCCTGTGCACCTCCAAATCTGGGACGCAGCTGgtaagagggcgtttgtttgtgtgaaccagctccttctaataattcctaga Alignment from GeneWise AGCTACAGTCCCACAGTGTTTGAGCGCTATAATGCCACTCTGCAGATGAAGGGTAAACCTGTGCACCTCCAAATCTGGGACACAGCCG cttactagccactgcttaagagttttcagccagggtctctttgcctttagAGTTACAGTCCAACGGTATTTGAGCGTTACAATGCCACTCTGCAGATGAAGGGTAAGCCTGTGCACCTCCAAATCTGGGACGCAGCTGgtaagagggcgtttgtttgtgtgaaccagctccttctaataattcctaga #### Rin1_ID808_3 --> 0 - 1 Original Alignment ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCg ctacaggagatggacaaagagacctaaaaaacactgtcttttctttacagACATTTGTTGTATGCAAATACAACACTCGCCAGTGCCAGGCTCTGTGTGTACGGTTACCAGAACCTAGTGGCCCAGCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGTggtcagaaggataataaggggtctaggcacattcataagtacatgaatgag Alignment from CESAR ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCg ctacaggagatggacaaagagacctaaaaaacactgtcttttctttacagACATTTGTTGTATGCAAATACAACACTCGCCAGTGCCAGGCTCTGTGTGTACGGTTACCAGAACCTAGTGGCCCAGCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGTggtcagaaggataataaggggtctaggcacattcataagtacatgaatgag Alignment from Spaln_aa2Genome ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG ctacaggagatggacaaagagacctaaaaaacactgtcttttctttacagACATTTGTTGTATGCAAATACAACACTCGCCAGTGCCAGGCTCTGTGTGTACGGTTACCAGAACCTAGTGGCCCAGCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGTGgtcagaaggataataaggggtctaggcacattcataagtacatgaatgag Alignment from Spaln_nt2Genome ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG ctacaggagatggacaaagagacctaaaaaacactgtcttttctttacagACATTTGTTGTATGCAAATACAACACTCGCCAGTGCCAGGCTCTGTGTGTACGGTTACCAGAACCTAGTGGCCCAGCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGTGgtcagaaggataataaggggtctaggcacattcataagtacatgaatgag Alignment from Pairagon ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG ctacaggagatggacaaagagacctaaaaaacactgtcttttctttacagACATTTGTTGTATGCAAATACAACACTCGCCAGTGCCAGGCTCTGTGTGTACGGTTACCAGAACCTAGTGGCCCAGCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGTGgtcagaaggataataaggggtctaggcacattcataagtacatgaatgag Alignment from Exonerate_protein2genome ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG ctacaggagatggacaaagagacctaaaaaacactgtcttttctttacagACATTTGTTGTATGCAAATACAACACTCGCCAGTGCCAGGCTCTGTGTGTACGGTTACCAGAACCTAGTGGCCCAGCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGTGgtcagaaggataataaggggtctaggcacattcataagtacatgaatgag Alignment from Exonerate_coding2genome ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG ctacaggagatggacaaagagacctaaaaaacactgtcttttctttacagACATTTGTTGTATGCAAATACAACACTCGCCAGTGCCAGGCTCTGTGTGTACGGTTACCAGAACCTAGTGGCCCAGCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGTGgtcagaaggataataaggggtctaggcacattcataagtacatgaatgag Alignment from GeneWise ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG ctacaggagatggacaaagagacctaaaaaacactgtcttttctttacagACATTTGTTGTATGCAAATACAACACTCGCCAGTGCCAGGCTCTGTGTGTACGGTTACCAGAACCTAGTGGCCCAGCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGTGgtcagaaggataataaggggtctaggcacattcataagtacatgaatgag #### Rin1_ID812_7 --> 2 - 1 Original Alignment aaTTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAg agtacgatttcaacacaaaatcccctgggatctgcctctggtttctttagaaTTGGTGCTGGAGAAGTCCCTGCATCGCTCGGTTCTCAAACCACTTCGACCTATCCTGGCTGCTCGCCTACGCCACCGGCTTTCTACTGATGGTTCTCTTGGTTGTCTAGCAGAGGGCTTTCTCCTCACCCGAACCCAGGGACCTGGGGCCTTTGGGCCCCACTTGACTCTTTCTTCTCCAGTGGAGACAGAACAGGTATGTCAGAAGCTTCTACAGCTCCTACGTGCGTACTCACCTAGTGCCCAAGTTAAGTGGCTCCTACAGGCCTGCAAGCTACTGTATACAGCCCTGAAGAGCCAAGCAggtgagtgacaaccatcttcccctagggctagagcacatatcacacctcca Alignment from CESAR aaTTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAg agtacgatttcaacacaaaatcccctgggatctgcctctggtttctttagaaTTGGTGCTGGAGAAGTCCCTGCATCGCTCGGTTCTCAAACCACTTCGACCTATCCTGGCTGCTCGCCTACGCCACCGGCTTTCTACTGATGGTTCTCTTGGTTGTCTAGCAGAGGGCTTTCTCCTCACCCGAACCCAGGGACCTGGGGCCTTTGGGCCCCACTTGACTCTTTCTTCTCCAGTGGAGACAGAACAGGTATGTCAGAAGCTTCTACAGCTCCTACGTGCGTACTCACCTAGTGCCCAAGTTAAGTGGCTCCTACAGGCCTGCAAGCTACTGTATACAGCCCTGAAGAGCCAAGCAggtgagtgacaaccatcttcccctagggctagagcacatatcacacctcca Alignment from Spaln_aa2Genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG agtacgatttcaacacaaaatcccctgggatctgcctctggtttctttagAATTGGTGCTGGAGAAGTCCCTGCATCGCTCGGTTCTCAAACCACTTCGACCTATCCTGGCTGCTCGCCTACGCCACCGGCTTTCTACTGATGGTTCTCTTGGTTGTCTAGCAGAGGGCTTTCTCCTCACCCGAACCCAGGGACCTGGGGCCTTTGGGCCCCACTTGACTCTTTCTTCTCCAGTGGAGACAGAACAGGTATGTCAGAAGCTTCTACAGCTCCTACGTGCGTACTCACCTAGTGCCCAAGTTAAGTGGCTCCTACAGGCCTGCAAGCTACTGTATACAGCCCTGAAGAGCCAAGCAGgtgagtgacaaccatcttcccctagggctagagcacatatcacacctcca Alignment from Spaln_nt2Genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG agtacgatttcaacacaaaatcccctgggatctgcctctggtttctttagAATTGGTGCTGGAGAAGTCCCTGCATCGCTCGGTTCTCAAACCACTTCGACCTATCCTGGCTGCTCGCCTACGCCACCGGCTTTCTACTGATGGTTCTCTTGGTTGTCTAGCAGAGGGCTTTCTCCTCACCCGAACCCAGGGACCTGGGGCCTTTGGGCCCCACTTGACTCTTTCTTCTCCAGTGGAGACAGAACAGGTATGTCAGAAGCTTCTACAGCTCCTACGTGCGTACTCACCTAGTGCCCAAGTTAAGTGGCTCCTACAGGCCTGCAAGCTACTGTATACAGCCCTGAAGAGCCAAGCAGgtgagtgacaaccatcttcccctagggctagagcacatatcacacctcca Alignment from Pairagon AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG agtacgatttcaacacaaaatcccctgggatctgcctctggtttctttagAATTGGTGCTGGAGAAGTCCCTGCATCGCTCGGTTCTCAAACCACTTCGACCTATCCTGGCTGCTCGCCTACGCCACCGGCTTTCTACTGATGGTTCTCTTGGTTGTCTAGCAGAGGGCTTTCTCCTCACCCGAACCCAGGGACCTGGGGCCTTTGGGCCCCACTTGACTCTTTCTTCTCCAGTGGAGACAGAACAGGTATGTCAGAAGCTTCTACAGCTCCTACGTGCGTACTCACCTAGTGCCCAAGTTAAGTGGCTCCTACAGGCCTGCAAGCTACTGTATACAGCCCTGAAGAGCCAAGCAGgtgagtgacaaccatcttcccctagggctagagcacatatcacacctcca Alignment from Exonerate_protein2genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG agtacgatttcaacacaaaatcccctgggatctgcctctggtttctttagAATTGGTGCTGGAGAAGTCCCTGCATCGCTCGGTTCTCAAACCACTTCGACCTATCCTGGCTGCTCGCCTACGCCACCGGCTTTCTACTGATGGTTCTCTTGGTTGTCTAGCAGAGGGCTTTCTCCTCACCCGAACCCAGGGACCTGGGGCCTTTGGGCCCCACTTGACTCTTTCTTCTCCAGTGGAGACAGAACAGGTATGTCAGAAGCTTCTACAGCTCCTACGTGCGTACTCACCTAGTGCCCAAGTTAAGTGGCTCCTACAGGCCTGCAAGCTACTGTATACAGCCCTGAAGAGCCAAGCAGgtgagtgacaaccatcttcccctagggctagagcacatatcacacctcca Alignment from Exonerate_coding2genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG agtacgatttcaacacaaaatcccctgggatctgcctctggtttctttagAATTGGTGCTGGAGAAGTCCCTGCATCGCTCGGTTCTCAAACCACTTCGACCTATCCTGGCTGCTCGCCTACGCCACCGGCTTTCTACTGATGGTTCTCTTGGTTGTCTAGCAGAGGGCTTTCTCCTCACCCGAACCCAGGGACCTGGGGCCTTTGGGCCCCACTTGACTCTTTCTTCTCCAGTGGAGACAGAACAGGTATGTCAGAAGCTTCTACAGCTCCTACGTGCGTACTCACCTAGTGCCCAAGTTAAGTGGCTCCTACAGGCCTGCAAGCTACTGTATACAGCCCTGAAGAGCCAAGCAGgtgagtgacaaccatcttcccctagggctagagcacatatcacacctcca Alignment from GeneWise AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG agtacgatttcaacacaaaatcccctgggatctgcctctggtttctttagAATTGGTGCTGGAGAAGTCCCTGCATCGCTCGGTTCTCAAACCACTTCGACCTATCCTGGCTGCTCGCCTACGCCACCGGCTTTCTACTGATGGTTCTCTTGGTTGTCTAGCAGAGGGCTTTCTCCTCACCCGAACCCAGGGACCTGGGGCCTTTGGGCCCCACTTGACTCTTTCTTCTCCAGTGGAGACAGAACAGGTATGTCAGAAGCTTCTACAGCTCCTACGTGCGTACTCACCTAGTGCCCAAGTTAAGTGGCTCCTACAGGCCTGCAAGCTACTGTATACAGCCCTGAAGAGCCAAGCAGgtgagtgacaaccatcttcccctagggctagagcacatatcacacctcca #### Rin1_ID813_8 --> 2 - 1 Original Alignment gaGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTC---ACTGGAGAGg tgaccctaaattccagacctccagtacaggtacttgttatttgttcataggaGAAAATACAGGAGCTGATCAGTTCCTCCCCCTGCTAAGCCTTATTTTGGCACAGTGTGACCTGCCAGACCTCTTATTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTCTACTCACCGCAGGTGAGggtaaggatccctcattgattatatagtatgacctggtacttgttggtagg Alignment from CESAR gaGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGg tgaccctaaattccagacctccagtacaggtacttgttatttgttcataggaGAAAATACAGGAGCTGATCAGTTCCTCCCCCTGCTAAGCCTTATTTTGGCACAGTGTGACCTGCCAGACCTCTTATTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTCTACTCACCGCAGGTGAGggtaaggatccctcattgattatatagtatgacctggtacttgttggtagg Alignment from Spaln_aa2Genome GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGG tgaccctaaattccagacctccagtacaggtacttgttatttgttcatagGAGAAAATACAGGAGCTGATCAGTTCCTCCCCCTGCTAAGCCTTATTTTGGCACAGTGTGACCTGCCAGACCTCTTATTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTCTACTCACCGCAGGTGAGGgtaaggatccctcattgattatatagtatgacctggtacttgttggtagg Alignment from Spaln_nt2Genome GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACTGGAG---AGG tgaccctaaattccagacctccagtacaggtacttgttatttgttcatagGAGAAAATACAGGAGCTGATCAGTTCCTCCCCCTGCTAAGCCTTATTTTGGCACAGTGTGACCTGCCAGACCTCTTATTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTCTACTCACCGCAGGTGAGGgtaaggatccctcattgattatatagtatgacctggtacttgttggtagg Alignment from Pairagon GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACTGGA---GAGG tgaccctaaattccagacctccagtacaggtacttgttatttgttcatagGAGAAAATACAGGAGCTGATCAGTTCCTCCCCCTGCTAAGCCTTATTTTGGCACAGTGTGACCTGCCAGACCTCTTATTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTCTACTCACCGCAGGTGAGGgtaaggatccctcattgattatatagtatgacctggtacttgttggtagg Alignment from Exonerate_protein2genome GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGG tgaccctaaattccagacctccagtacaggtacttgttatttgttcatagGAGAAAATACAGGAGCTGATCAGTTCCTCCCCCTGCTAAGCCTTATTTTGGCACAGTGTGACCTGCCAGACCTCTTATTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTCTACTCACCGCAGGTGAGGgtaaggatccctcattgattatatagtatgacctggtacttgttggtagg Alignment from Exonerate_coding2genome GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGG tgaccctaaattccagacctccagtacaggtacttgttatttgttcatagGAGAAAATACAGGAGCTGATCAGTTCCTCCCCCTGCTAAGCCTTATTTTGGCACAGTGTGACCTGCCAGACCTCTTATTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTCTACTCACCGCAGGTGAGGgtaaggatccctcattgattatatagtatgacctggtacttgttggtagg Alignment from GeneWise GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGG tgaccctaaattccagacctccagtacaggtacttgttatttgttcatagGAGAAAATACAGGAGCTGATCAGTTCCTCCCCCTGCTAAGCCTTATTTTGGCACAGTGTGACCTGCCAGACCTCTTATTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTCTACTCACCGCAGGTGAGGgtaaggatccctcattgattatatagtatgacctggtacttgttggtagg #### Rnls_ID6799_4 --> 2 - 1 Original Alignment taATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGAGCTACTCCTCTCGCTATGCTCTGGGCCTCTTTTATGAAGTAGGCATGAAGATTGGTGTCCCTTGGTCCTGCCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAGAAGCGCAATATAg tacccttaaatatttcaaaattcaccataacacttgggtgttctttgaagtaATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGACCTACTCCTCTCGCTATGCTTTAGGCCTCTTTTATGAAGTAGGCATGAAGAATGGTGTCCCTTGGTCATGTCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAAAAGCGCAATATAggtgagtctcccacaatgacaaacaacgtaggttgaggaaaatggtgtttg Alignment from CESAR taATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGAGCTACTCCTCTCGCTATGCTCTGGGCCTCTTTTATGAAGTAGGCATGAAGATTGGTGTCCCTTGGTCCTGCCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAGAAGCGCAATATAg tacccttaaatatttcaaaattcaccataacacttgggtgttctttgaagtaATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGACCTACTCCTCTCGCTATGCTTTAGGCCTCTTTTATGAAGTAGGCATGAAGAATGGTGTCCCTTGGTCATGTCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAAAAGCGCAATATAggtgagtctcccacaatgacaaacaacgtaggttgaggaaaatggtgtttg Alignment from Spaln_aa2Genome TAATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGAGCTACTCCTCTCGCTATGCTCTGGGCCTCTTTTATGAAGTAGGCATGAAGATTGGTGTCCCTTGGTCCTGCCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAGAAGCGCAATATAG tacccttaaatatttcaaaattcaccataacacttgggtgttctttgaagTAATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGACCTACTCCTCTCGCTATGCTTTAGGCCTCTTTTATGAAGTAGGCATGAAGAATGGTGTCCCTTGGTCATGTCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAAAAGCGCAATATAGgtgagtctcccacaatgacaaacaacgtaggttgaggaaaatggtgtttg Alignment from Spaln_nt2Genome TAATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGAGCTACTCCTCTCGCTATGCTCTGGGCCTCTTTTATGAAGTAGGCATGAAGATTGGTGTCCCTTGGTCCTGCCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAGAAGCGCAATATAG tacccttaaatatttcaaaattcaccataacacttgggtgttctttgaagTAATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGACCTACTCCTCTCGCTATGCTTTAGGCCTCTTTTATGAAGTAGGCATGAAGAATGGTGTCCCTTGGTCATGTCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAAAAGCGCAATATAGgtgagtctcccacaatgacaaacaacgtaggttgaggaaaatggtgtttg Alignment from Pairagon TAATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGAGCTACTCCTCTCGCTATGCTCTGGGCCTCTTTTATGAAGTAGGCATGAAGATTGGTGTCCCTTGGTCCTGCCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAGAAGCGCAATATAG tacccttaaatatttcaaaattcaccataacacttgggtgttctttgaagTAATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGACCTACTCCTCTCGCTATGCTTTAGGCCTCTTTTATGAAGTAGGCATGAAGAATGGTGTCCCTTGGTCATGTCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAAAAGCGCAATATAGgtgagtctcccacaatgacaaacaacgtaggttgaggaaaatggtgtttg Alignment from Exonerate_protein2genome TAATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGAGCTACTCCTCTCGCTATGCTCTGGGCCTCTTTTATGAAGTAGGCATGAAGATTGGTGTCCCTTGGTCCTGCCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAGAAGCGCAATATAG tacccttaaatatttcaaaattcaccataacacttgggtgttctttgaagTAATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGACCTACTCCTCTCGCTATGCTTTAGGCCTCTTTTATGAAGTAGGCATGAAGAATGGTGTCCCTTGGTCATGTCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAAAAGCGCAATATAGgtgagtctcccacaatgacaaacaacgtaggttgaggaaaatggtgtttg Alignment from Exonerate_coding2genome TAATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGAGCTACTCCTCTCGCTATGCTCTGGGCCTCTTTTATGAAGTAGGCATGAAGATTGGTGTCCCTTGGTCCTGCCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAGAAGCGCAATATAG tacccttaaatatttcaaaattcaccataacacttgggtgttctttgaagTAATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGACCTACTCCTCTCGCTATGCTTTAGGCCTCTTTTATGAAGTAGGCATGAAGAATGGTGTCCCTTGGTCATGTCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAAAAGCGCAATATAGgtgagtctcccacaatgacaaacaacgtaggttgaggaaaatggtgtttg Alignment from GeneWise TAATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGAGCTACTCCTCTCGCTATGCTCTGGGCCTCTTTTATGAAGTAGGCATGAAGATTGGTGTCCCTTGGTCCTGCCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAGAAGCGCAATATAG tacccttaaatatttcaaaattcaccataacacttgggtgttctttgaagTAATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGACCTACTCCTCTCGCTATGCTTTAGGCCTCTTTTATGAAGTAGGCATGAAGAATGGTGTCCCTTGGTCATGTCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAAAAGCGCAATATAGgtgagtctcccacaatgacaaacaacgtaggttgaggaaaatggtgtttg #### Rnls_ID6819_2 --> 1 - 1 Original Alignment tTTTTATGAGGAACTGTTAGCTCATGGAATTTTGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAGGGAAGGAAGGAGATTGCAACTTTGTGGCACCTCAAGGATTTTCTTCAGTTATCAAGTACTACTTGAAAAAGTCAg gtaagacaactttaaagtgaactacaccataagcagtttctgtttcccagtTTTTATGAGGGACTTTTAACGCATGAAATCTTAAAGCCTATAACCTCTCCCATTGAAGGCATGAAAGGAAAAGAAGGAGATTGCAACTTTGTAGCACCTCAAGGATTCTCTTCAGTTATTACATACTACTTGAAAAAGTCTggtaagtggtggatatttggtctcgtggggtaatagtggtgggctaacagc Alignment from CESAR tTTTTATGAGGAACTGTTAGCTCATGGAATTTTGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAGGGAAGGAAGGAGATTGCAACTTTGTGGCACCTCAAGGATTTTCTTCAGTTATCAAGTACTACTTGAAAAAGTCAg gtaagacaactttaaagtgaactacaccataagcagtttctgtttcccagtTTTTATGAGGGACTTTTAACGCATGAAATCTTAAAGCCTATAACCTCTCCCATTGAAGGCATGAAAGGAAAAGAAGGAGATTGCAACTTTGTAGCACCTCAAGGATTCTCTTCAGTTATTACATACTACTTGAAAAAGTCTggtaagtggtggatatttggtctcgtggggtaatagtggtgggctaacagc Alignment from Spaln_aa2Genome TTTTTATGAGGAACTGTTAGCTCATGGAATTTTGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAGGGAAGGAAGGAGATTGCAACTTTGTGGCACCTCAAGGATTTTCTTCAGTTATCAAGTACTACTTGAAAAAGTCAG gtaagacaactttaaagtgaactacaccataagcagtttctgtttcccagTTTTTATGAGGGACTTTTAACGCATGAAATCTTAAAGCCTATAACCTCTCCCATTGAAGGCATGAAAGGAAAAGAAGGAGATTGCAACTTTGTAGCACCTCAAGGATTCTCTTCAGTTATTACATACTACTTGAAAAAGTCTGgtaagtggtggatatttggtctcgtggggtaatagtggtgggctaacagc Alignment from Spaln_nt2Genome TTTTTATGAGGAACTGTTAGCTCATGGAATTTTGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAGGGAAGGAAGGAGATTGCAACTTTGTGGCACCTCAAGGATTTTCTTCAGTTATCAAGTACTACTTGAAAAAGTCAG gtaagacaactttaaagtgaactacaccataagcagtttctgtttcccagTTTTTATGAGGGACTTTTAACGCATGAAATCTTAAAGCCTATAACCTCTCCCATTGAAGGCATGAAAGGAAAAGAAGGAGATTGCAACTTTGTAGCACCTCAAGGATTCTCTTCAGTTATTACATACTACTTGAAAAAGTCTGgtaagtggtggatatttggtctcgtggggtaatagtggtgggctaacagc Alignment from Pairagon TTTTTATGAGGAACTGTTAGCTCATGGAATTTTGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAGGGAAGGAAGGAGATTGCAACTTTGTGGCACCTCAAGGATTTTCTTCAGTTATCAAGTACTACTTGAAAAAGTCAG gtaagacaactttaaagtgaactacaccataagcagtttctgtttcccagTTTTTATGAGGGACTTTTAACGCATGAAATCTTAAAGCCTATAACCTCTCCCATTGAAGGCATGAAAGGAAAAGAAGGAGATTGCAACTTTGTAGCACCTCAAGGATTCTCTTCAGTTATTACATACTACTTGAAAAAGTCTGgtaagtggtggatatttggtctcgtggggtaatagtggtgggctaacagc Alignment from Exonerate_protein2genome TTTTTATGAGGAACTGTTAGCTCATGGAATTTTGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAGGGAAGGAAGGAGATTGCAACTTTGTGGCACCTCAAGGATTTTCTTCAGTTATCAAGTACTACTTGAAAAAGTCAG gtaagacaactttaaagtgaactacaccataagcagtttctgtttcccagTTTTTATGAGGGACTTTTAACGCATGAAATCTTAAAGCCTATAACCTCTCCCATTGAAGGCATGAAAGGAAAAGAAGGAGATTGCAACTTTGTAGCACCTCAAGGATTCTCTTCAGTTATTACATACTACTTGAAAAAGTCTGgtaagtggtggatatttggtctcgtggggtaatagtggtgggctaacagc Alignment from Exonerate_coding2genome TTTTTATGAGGAACTGTTAGCTCATGGAATTTTGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAGGGAAGGAAGGAGATTGCAACTTTGTGGCACCTCAAGGATTTTCTTCAGTTATCAAGTACTACTTGAAAAAGTCAG gtaagacaactttaaagtgaactacaccataagcagtttctgtttcccagTTTTTATGAGGGACTTTTAACGCATGAAATCTTAAAGCCTATAACCTCTCCCATTGAAGGCATGAAAGGAAAAGAAGGAGATTGCAACTTTGTAGCACCTCAAGGATTCTCTTCAGTTATTACATACTACTTGAAAAAGTCTGgtaagtggtggatatttggtctcgtggggtaatagtggtgggctaacagc Alignment from GeneWise TTTTTATGAGGAACTGTTAGCTCATGGAATTTTGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAGGGAAGGAAGGAGATTGCAACTTTGTGGCACCTCAAGGATTTTCTTCAGTTATCAAGTACTACTTGAAAAAGTCAG gtaagacaactttaaagtgaactacaccataagcagtttctgtttcccagTTTTTATGAGGGACTTTTAACGCATGAAATCTTAAAGCCTATAACCTCTCCCATTGAAGGCATGAAAGGAAAAGAAGGAGATTGCAACTTTGTAGCACCTCAAGGATTCTCTTCAGTTATTACATACTACTTGAAAAAGTCTGgtaagtggtggatatttggtctcgtggggtaatagtggtgggctaacagc #### Rom1_ID2497_2 --> 1 - 0 Original Alignment cCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttcagtcccgcttcactacatctcatttgtccagacctttcctcttacagtCAGATTCCAAGCAATATAGAAGGATTATACCTGATTGATGGGGTTCCGTTCTCCTGCTGTAATCCCCACTCACCA------TGCCTGCAAAGCCAACTCTCAGACCCCTATGCTCATCCACTTCTT---CCTCAGCAGCCAAATCTAAACCTGTGGTCCCAAGGATGCCACAAAGTGCTGTTGGAACGCCTGCAGGGTTTATCTGGGACATTGGGGACAATTCTGGTGATTACTTTATTGTTGCAGgtaaagcatcaagatctctaacttccatactctatttttagacctaaaac Alignment from CESAR cCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttcagtcccgcttcactacatctcatttgtccagacctttcctcttacagtCAGATTCCAAGCAATATAGAAGGATTATACCTGATTGATGGGGTTCCGTTCTCCTGCTGTAATCCCCACTCA------CCATGCCTGCAAAGCCAACTCTCAGACCCCTATGCTCATCCACTTCTT---CCTCAGCAGCCAAATCTAAACCTGTGGTCCCAAGGATGCCACAAAGTGCTGTTGGAACGCCTGCAGGGTTTATCTGGGACATTGGGGACAATTCTGGTGATTACTTTATTGTTGCAGgtaaagcatcaagatctctaacttccatactctatttttagacctaaaac Alignment from Spaln_aa2Genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttcagtcccgcttcactacatctcatttgtccagacctttcctcttacagTCAGATTCCAAGCAATATAGAAGGATTATACCTGATTGATGGGGTTCCGTTCTCCTGCTGTAATCCCCACTCA------CCATGCCTGCAAAGCCAACTCTCAGACCCCTATGCTCATCCACTTCTT---CCTCAGCAGCCAAATCTAAACCTGTGGTCCCAAGGATGCCACAAAGTGCTGTTGGAACGCCTGCAGGGTTTATCTGGGACATTGGGGACAATTCTGGTGATTACTTTATTGTTGCAGgtaaagcatcaagatctctaacttccatactctatttttagacctaaaac Alignment from Spaln_nt2Genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttcagtcccgcttcactacatctcatttgtccagacctttcctcttacagTCAGATTCCAAGCAATATAGAAGGATTATACCTGATTGATGGGGTTCCGTTCTCCTGCTGTAATCCCCACTCA------CCATGCCTGCAAAGCCAACTCTCAGACCCCTATGCTCATCCACTTCT---TCCTCAGCAGCCAAATCTAAACCTGTGGTCCCAAGGATGCCACAAAGTGCTGTTGGAACGCCTGCAGGGTTTATCTGGGACATTGGGGACAATTCTGGTGATTACTTTATTGTTGCAGgtaaagcatcaagatctctaacttccatactctatttttagacctaaaac Alignment from Pairagon CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttcagtcccgcttcactacatctcatttgtccagacctttcctcttacagTCAGATTCCAAGCAATATAGAAGGATTATACCTGATTGATGGGGTTCCGTTCTCCTGCTGTAATCCCCACTCACCA------TGCCTGCAAAGCCAACTCTCAGACCCCTATGCTCATCCACTTCT---TCCTCAGCAGCCAAATCTAAACCTGTGGTCCCAAGGATGCCACAAAGTGCTGTTGGAACGCCTGCAGGGTTTATCTGGGACATTGGGGACAATTCTGGTGATTACTTTATTGTTGCAGgtaaagcatcaagatctctaacttccatactctatttttagacctaaaac Alignment from Exonerate_protein2genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttcagtcccgcttcactacatctcatttgtccagacctttcctcttacagTCAGATTCCAAGCAATATAGAAGGATTATACCTGATTGATGGGGTTCCGTTCTCCTGCTGTAATCCCCACTCA------CCATGCCTGCAAAGCCAACTCTCAGACCCCTATGCTCATCCACTTCTT---CCTCAGCAGCCAAATCTAAACCTGTGGTCCCAAGGATGCCACAAAGTGCTGTTGGAACGCCTGCAGGGTTTATCTGGGACATTGGGGACAATTCTGGTGATTACTTTATTGTTGCAGgtaaagcatcaagatctctaacttccatactctatttttagacctaaaac Alignment from Exonerate_coding2genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttcagtcccgcttcactacatctcatttgtccagacctttcctcttacagTCAGATTCCAAGCAATATAGAAGGATTATACCTGATTGATGGGGTTCCGTTCTCCTGCTGTAATCCCCACTCA------CCATGCCTGCAAAGCCAACTCTCAGACCCCTATGCTCATCCACTTCTT---CCTCAGCAGCCAAATCTAAACCTGTGGTCCCAAGGATGCCACAAAGTGCTGTTGGAACGCCTGCAGGGTTTATCTGGGACATTGGGGACAATTCTGGTGATTACTTTATTGTTGCAGgtaaagcatcaagatctctaacttccatactctatttttagacctaaaac Alignment from GeneWise CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttcagtcccgcttcactacatctcatttgtccagacctttcctcttacagTCAGATTCCAAGCAATATAGAAGGATTATACCTGATTGATGGGGTTCCGTTCTCCTGCTGTAATCCCCACTCACCA------TGCCTGCAAAGCCAACTCTCAGACCCCTATGCTCATCCACTTCTT---CCTCAGCAGCCAAATCTAAACCTGTGGTCCCAAGGATGCCACAAAGTGCTGTTGGAACGCCTGCAGGGTTTATCTGGGACATTGGGGACAATTCTGGTGATTACTTTATTGTTGCAGgtaaagcatcaagatctctaacttccatactctatttttagacctaaaac #### Rpp30_ID7089_9 --> 0 - 2 Original Alignment CCTTTGGAAATAAGAGGACCATATGACGTGGCAAACtt gtgaacaagctgtgtgctggcacaggaactctcattcctcttccctacagCCCCTGGAAATACGAGGACCATATGATGTGGCCAATttgtaagttatcaggtataggctcattagtatgttttttggggtagtcctct Alignment from CESAR CCTTTGGAAATAAGAGGACCATATGACGTGGCAAACtt gtgaacaagctgtgtgctggcacaggaactctcattcctcttccctacagCCCCTGGAAATACGAGGACCATATGATGTGGCCAATttgtaagttatcaggtataggctcattagtatgttttttggggtagtcctct Alignment from Spaln_aa2Genome CCTTTGGAAATAAGAGGACCATATGACGTGGCAAACTT gtgaacaagctgtgtgctggcacaggaactctcattcctcttccctacagCCCCTGGAAATACGAGGACCATATGATGTGGCCAATTTgtaagttatcaggtataggctcattagtatgttttttggggtagtcctct Alignment from Spaln_nt2Genome CCTTTGGAAATAAGAGGACCATATGACGTGGCAAACTT gtgaacaagctgtgtgctggcacaggaactctcattcctcttccctacagCCCCTGGAAATACGAGGACCATATGATGTGGCCAATTTgtaagttatcaggtataggctcattagtatgttttttggggtagtcctct Alignment from Pairagon CCTTTGGAAATAAGAGGACCATATGACGTGGCAAACTT gtgaacaagctgtgtgctggcacaggaactctcattcctcttccctacagCCCCTGGAAATACGAGGACCATATGATGTGGCCAATTTgtaagttatcaggtataggctcattagtatgttttttggggtagtcctct Alignment from Exonerate_protein2genome CCTTTGGAAATAAGAGGACCATATGACGTGGCAAACTT gtgaacaagctgtgtgctggcacaggaactctcattcctcttccctacagCCCCTGGAAATACGAGGACCATATGATGTGGCCAATTTgtaagttatcaggtataggctcattagtatgttttttggggtagtcctct Alignment from Exonerate_coding2genome AATGTAATTCTGTCCAGTGCTGCAGAAAGGCCTTTGGAAATAAGAGGACCATATGACGTGGCAAACTT gtgaacaagctgtgtgctggCACAGGAACTCTCATTCCTCTTCCCTACAGCCCCTGGAAATACGAGGACCATATGATGTGGCCAATTTgtaagttatcaggtataggctcattagtatgttttttggggtagtcctct Alignment from GeneWise TAATTCTG---------------TCCAGTGCTGCAGAAAGGCCTTTGGAAATAAGAGGACCATATGACGTGGCAAACTT gtgaacaagCTGTGTGCTGGCACAGGAACTCTCATTCCTCTTCCCTACAGCCCCTGGAAATACGAGGACCATATGATGTGGCCAATTTgtaagttatcaggtataggctcattagtatgttttttggggtagtcctct #### Rps6kb2_ID368_14 --> 0 - 2 Original Alignment GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCag gaagggggttgtgccacttggctttactctgaattcccttcctctgccagGGTTTTATGTATGTGGCGCCTTTCGTCCTAGACAGCATCAAAGAAGGTTTCTCATTCCAGCCCAAGCTGCGTTCTCCACGATGCCTCAACAGCAGTCCCCGCACACCCATCaggtgagtggcagggcagataaatatctagtccatgactttcaaaaatgcac Alignment from CESAR GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCag gaagggggttgtgccacttggctttactctgaattcccttcctctgccagGGTTTTATGTATGTGGCGCCTTTCGTCCTAGACAGCATCAAAGAAGGTTTCTCATTCCAGCCCAAGCTGCGTTCTCCACGATGCCTCAACAGCAGTCCCCGCACACCCATCaggtgagtggcagggcagataaatatctagtccatgactttcaaaaatgcac Alignment from Spaln_aa2Genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG gaagggggttgtgccacttggctttactctgaattcccttcctctgccagGGTTTTATGTATGTGGCGCCTTTCGTCCTAGACAGCATCAAAGAAGGTTTCTCATTCCAGCCCAAGCTGCGTTCTCCACGATGCCTCAACAGCAGTCCCCGCACACCCATCAGgtgagtggcagggcagataaatatctagtccatgactttcaaaaatgcac Alignment from Spaln_nt2Genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG gaagggggttgtgccacttggctttactctgaattcccttcctctgccagGGTTTTATGTATGTGGCGCCTTTCGTCCTAGACAGCATCAAAGAAGGTTTCTCATTCCAGCCCAAGCTGCGTTCTCCACGATGCCTCAACAGCAGTCCCCGCACACCCATCAGgtgagtggcagggcagataaatatctagtccatgactttcaaaaatgcac Alignment from Pairagon GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG gaagggggttgtgccacttggctttactctgaattcccttcctctgccagGGTTTTATGTATGTGGCGCCTTTCGTCCTAGACAGCATCAAAGAAGGTTTCTCATTCCAGCCCAAGCTGCGTTCTCCACGATGCCTCAACAGCAGTCCCCGCACACCCATCAGgtgagtggcagggcagataaatatctagtccatgactttcaaaaatgcac Alignment from Exonerate_protein2genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG gaagggggttgtgccacttggctttactctgaattcccttcctctgccagGGTTTTATGTATGTGGCGCCTTTCGTCCTAGACAGCATCAAAGAAGGTTTCTCATTCCAGCCCAAGCTGCGTTCTCCACGATGCCTCAACAGCAGTCCCCGCACACCCATCAGgtgagtggcagggcagataaatatctagtccatgactttcaaaaatgcac Alignment from Exonerate_coding2genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG gaagggggttgtgccacttggctttactctgaattcccttcctctgccagGGTTTTATGTATGTGGCGCCTTTCGTCCTAGACAGCATCAAAGAAGGTTTCTCATTCCAGCCCAAGCTGCGTTCTCCACGATGCCTCAACAGCAGTCCCCGCACACCCATCAGgtgagtggcagggcagataaatatctagtccatgactttcaaaaatgcac Alignment from GeneWise GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG gaagggggttgtgccacttggctttactctgaattcccttcctctgccagGGTTTTATGTATGTGGCGCCTTTCGTCCTAGACAGCATCAAAGAAGGTTTCTCATTCCAGCCCAAGCTGCGTTCTCCACGATGCCTCAACAGCAGTCCCCGCACACCCATCAGgtgagtggcagggcagataaatatctagtccatgactttcaaaaatgcac #### Rps6kb2_ID370_12 --> 0 - 0 Original Alignment AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gcaggaagacaagtcaagttgacatagtctctcgggttgtgtgttgccagCGGCACCCTTTCTTCCGACACATCAATTGGGATGACCTCTTAGCCTGCTGCGTGGACCCTCTCTTCAGGCCAAGTCTAgtaagtacatggacattggtattctttacacactataggggttttcagta Alignment from CESAR AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gcaggaagacaagtcaagttgacatagtctctcgggttgtgtgttgccagCGGCACCCTTTCTTCCGACACATCAATTGGGATGACCTCTTAGCCTGCTGCGTGGACCCTCTCTTCAGGCCAAGTCTAgtaagtacatggacattggtattctttacacactataggggttttcagta Alignment from Spaln_aa2Genome AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gcaggaagacaagtcaagttgacatagtctctcgggttgtgtgttgccagCGGCACCCTTTCTTCCGACACATCAATTGGGATGACCTCTTAGCCTGCTGCGTGGACCCTCTCTTCAGGCCAAGTCTAgtaagtacatggacattggtattctttacacactataggggttttcagta Alignment from Spaln_nt2Genome AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gcaggaagacaagtcaagttgacatagtctctcgggttgtgtgttgccagCGGCACCCTTTCTTCCGACACATCAATTGGGATGACCTCTTAGCCTGCTGCGTGGACCCTCTCTTCAGGCCAAGTCTAgtaagtacatggacattggtattctttacacactataggggttttcagta Alignment from Pairagon AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gcaggaagacaagtcaagttgacatagtctctcgggttgtgtgttgccagCGGCACCCTTTCTTCCGACACATCAATTGGGATGACCTCTTAGCCTGCTGCGTGGACCCTCTCTTCAGGCCAAGTCTAgtaagtacatggacattggtattctttacacactataggggttttcagta Alignment from Exonerate_protein2genome AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gcaggaagacaagtcaagttgacatagtctctcgggttgtgtgttgccagCGGCACCCTTTCTTCCGACACATCAATTGGGATGACCTCTTAGCCTGCTGCGTGGACCCTCTCTTCAGGCCAAGTCTAgtaagtacatggacattggtattctttacacactataggggttttcagta Alignment from Exonerate_coding2genome AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gcaggaagacaagtcaagttgacatagtctctcgggttgtgtgttgccagCGGCACCCTTTCTTCCGACACATCAATTGGGATGACCTCTTAGCCTGCTGCGTGGACCCTCTCTTCAGGCCAAGTCTAgtaagtacatggacattggtattctttacacactataggggttttcagta Alignment from GeneWise AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gcaggaagacaagtcaagttgacatagtctctcgggttgtgtgttgccagCGGCACCCTTTCTTCCGACACATCAATTGGGATGACCTCTTAGCCTGCTGCGTGGACCCTCTCTTCAGGCCAAGTCTAgtaagtacatggacattggtattctttacacactataggggttttcagta #### Rps6kb2_ID376_6 --> 2 - 2 Original Alignment gtGGTGAGCTCTTCACACATCTTGAGCGAGAAGGCATCTTCCTGGAAGACACAGCCtg aagctaaatttgctgatcaagtcttctgtggcatttttatttttgttcagttGGTGAGCTTTTCACACATCTAGAACGGGAAGGCATATTTCTGGAAGACACAGCCtggtgagaaagtctgcagggtatcttgtgtagtagatattaagctctgcctc Alignment from CESAR gtGGTGAGCTCTTCACACATCTTGAGCGAGAAGGCATCTTCCTGGAAGACACAGCCtg aagctaaatttgctgatcaagtcttctgtggcatttttatttttgttcagttGGTGAGCTTTTCACACATCTAGAACGGGAAGGCATATTTCTGGAAGACACAGCCtggtgagaaagtctgcagggtatcttgtgtagtagatattaagctctgcctc Alignment from Spaln_aa2Genome GTGGTGAGCTCTTCACACATCTTGAGCGAGAAGGCATCTTCCTGGAAGACACAGCCTG aagctaaatttgctgatcaagtcttctgtggcatttttatttttgttcagTTGGTGAGCTTTTCACACATCTAGAACGGGAAGGCATATTTCTGGAAGACACAGCCTGgtgagaaagtctgcagggtatcttgtgtagtagatattaagctctgcctc Alignment from Spaln_nt2Genome GTGGTGAGCTCTTCACACATCTTGAGCGAGAAGGCATCTTCCTGGAAGACACAGCCTG aagctaaatttgctgatcaagtcttctgtggcatttttatttttgttcagTTGGTGAGCTTTTCACACATCTAGAACGGGAAGGCATATTTCTGGAAGACACAGCCTGgtgagaaagtctgcagggtatcttgtgtagtagatattaagctctgcctc Alignment from Pairagon GTGGTGAGCTCTTCACACATCTTGAGCGAGAAGGCATCTTCCTGGAAGACACAGCCTG aagctaaatttgctgatcaagtcttctgtggcatttttatttttgttcagTTGGTGAGCTTTTCACACATCTAGAACGGGAAGGCATATTTCTGGAAGACACAGCCTGgtgagaaagtctgcagggtatcttgtgtagtagatattaagctctgcctc Alignment from Exonerate_protein2genome GTGGTGAGCTCTTCACACATCTTGAGCGAGAAGGCATCTTCCTGGAAGACACAGCCTG aagctaaatttgctgatcaagtcttctgtggcatttttatttttgttcagTTGGTGAGCTTTTCACACATCTAGAACGGGAAGGCATATTTCTGGAAGACACAGCCTGgtgagaaagtctgcagggtatcttgtgtagtagatattaagctctgcctc Alignment from Exonerate_coding2genome GTGGTGAGCTCTTCACACATCTTGAGCGAGAAGGCATCTTCCTGGAAGACACAGCCTG aagctaaatttgctgatcaagtcttctgtggcatttttatttttgttcagTTGGTGAGCTTTTCACACATCTAGAACGGGAAGGCATATTTCTGGAAGACACAGCCTGgtgagaaagtctgcagggtatcttgtgtagtagatattaagctctgcctc Alignment from GeneWise GTGGTGAGCTCTTCACACATCTTGAGCGAGAAGGCATCTTCCTGGAAGACACAGCCTG aagctaaatttgctgatcaagtcttctgtggcatttttatttttgttcagTTGGTGAGCTTTTCACACATCTAGAACGGGAAGGCATATTTCTGGAAGACACAGCCTGgtgagaaagtctgcagggtatcttgtgtagtagatattaagctctgcctc #### Rrp12_ID8290_33 --> 0 - 2 Original Alignment AAGGCAAAAGGCGATGTAAAGAAGAAGGGCCGCCTGGATCCCTATGCGTACGTTCCACTCAACAGATCCAAGCTCAACCGCag aaatccttcagaacagtttggggcagagaaatcttctgtttaaatttcagAAGGCAAAAGGTGATGTAAAGAAGAAAGGCCGCCTAGACCCCTATGCATATGTTCCACTCAACAGATCTAAACTCAACCACaggtaagacaggcatataggcaccttcccaagtgcaggtagtattggtgtga Alignment from CESAR AAGGCAAAAGGCGATGTAAAGAAGAAGGGCCGCCTGGATCCCTATGCGTACGTTCCACTCAACAGATCCAAGCTCAACCGCag aaatccttcagaacagtttggggcagagaaatcttctgtttaaatttcagAAGGCAAAAGGTGATGTAAAGAAGAAAGGCCGCCTAGACCCCTATGCATATGTTCCACTCAACAGATCTAAACTCAACCACaggtaagacaggcatataggcaccttcccaagtgcaggtagtattggtgtga Alignment from Spaln_aa2Genome AAGGCAAAAGGCGATGTAAAGAAGAAGGGCCGCCTGGATCCCTATGCGTACGTTCCACTCAACAGATCCAAGCTCAACCGCAG aaatccttcagaacagtttggggcagagaaatcttctgtttaaatttcagAAGGCAAAAGGTGATGTAAAGAAGAAAGGCCGCCTAGACCCCTATGCATATGTTCCACTCAACAGATCTAAACTCAACCACAGgtaagacaggcatataggcaccttcccaagtgcaggtagtattggtgtga Alignment from Spaln_nt2Genome AAGGCAAAAGGCGATGTAAAGAAGAAGGGCCGCCTGGATCCCTATGCGTACGTTCCACTCAACAGATCCAAGCTCAACCGCAG aaatccttcagaacagtttggggcagagaaatcttctgtttaaatttcagAAGGCAAAAGGTGATGTAAAGAAGAAAGGCCGCCTAGACCCCTATGCATATGTTCCACTCAACAGATCTAAACTCAACCACAGgtaagacaggcatataggcaccttcccaagtgcaggtagtattggtgtga Alignment from Pairagon AAGGCAAAAGGCGATGTAAAGAAGAAGGGCCGCCTGGATCCCTATGCGTACGTTCCACTCAACAGATCCAAGCTCAACCGCAG aaatccttcagaacagtttggggcagagaaatcttctgtttaaatttcagAAGGCAAAAGGTGATGTAAAGAAGAAAGGCCGCCTAGACCCCTATGCATATGTTCCACTCAACAGATCTAAACTCAACCACAGgtaagacaggcatataggcaccttcccaagtgcaggtagtattggtgtga Alignment from Exonerate_protein2genome AAGGCAAAAGGCGATGTAAAGAAGAAGGGCCGCCTGGATCCCTATGCGTACGTTCCACTCAACAGATCCAAGCTCAACCGCAG aaatccttcagaacagtttggggcagagaaatcttctgtttaaatttcagAAGGCAAAAGGTGATGTAAAGAAGAAAGGCCGCCTAGACCCCTATGCATATGTTCCACTCAACAGATCTAAACTCAACCACAGgtaagacaggcatataggcaccttcccaagtgcaggtagtattggtgtga Alignment from Exonerate_coding2genome aaatccttcagaacagtttggggcagagaaatcttctgtttaaatttcagaaggcaaaaggtgatgtaaagaagaaaggccgcctagacccctatgcatatgttccactcaacagatctaaactcaaccacaggtaagacaggcatataggcaccttcccaagtgcaggtagtattggtgtga Alignment from GeneWise AAGGCAAAAGGCGATGTAAAGAAGAAGGGCCGCCTGGATCCCTATGCGTACGTTCCACTCAACAGATCCAAGCTCAACCGCAG aaatccttcagaacagtttggggcagagaaatcttctgtttaaatttcagAAGGCAAAAGGTGATGTAAAGAAGAAAGGCCGCCTAGACCCCTATGCATATGTTCCACTCAACAGATCTAAACTCAACCACAGgtaagacaggcatataggcaccttcccaagtgcaggtagtattggtgtga #### Rrp12_ID8292_31 --> 0 - 1 Original Alignment AAAAAGAAGCTTAAGCGGCAGAGGGAGGACGAGGAGGATGAGCTGGAGATCCCACCTCGGTACCAAg aacttacttgagttgcttgatcgacagccacctgtcccccccccccctagAAGAAGAAGCTTAAGCGGCAAAGGGAAGACGAGGAGGATGAACTGGAGATCCCAACACGGTATCAAggtaaggtatccatccattcctcgggtgtgagtcagcgtccatatctggct Alignment from CESAR AAAAAGAAGCTTAAGCGGCAGAGGGAGGACGAGGAGGATGAGCTGGAGATCCCACCTCGGTACCAAg aacttacttgagttgcttgatcgacagccacctgtcccccccccccctagAAGAAGAAGCTTAAGCGGCAAAGGGAAGACGAGGAGGATGAACTGGAGATCCCAACACGGTATCAAggtaaggtatccatccattcctcgggtgtgagtcagcgtccatatctggct Alignment from Spaln_aa2Genome AAAAAGAAGCTTAAGCGGCAGAGGGAGGACGAGGAGGATGAGCTGGAGATCCCACCTCGGTACCAAG aacttacttgagttgcttgatcgacagccacctgtcccccccccccctagAAGAAGAAGCTTAAGCGGCAAAGGGAAGACGAGGAGGATGAACTGGAGATCCCAACACGGTATCAAGgtaaggtatccatccattcctcgggtgtgagtcagcgtccatatctggct Alignment from Spaln_nt2Genome AAAAAGAAGCTTAAGCGGCAGAGGGAGGACGAGGAGGATGAGCTGGAGATCCCACCTCGGTACCAAG aacttacttgagttgcttgatcgacagccacctgtcccccccccccctagAAGAAGAAGCTTAAGCGGCAAAGGGAAGACGAGGAGGATGAACTGGAGATCCCAACACGGTATCAAGgtaaggtatccatccattcctcgggtgtgagtcagcgtccatatctggct Alignment from Pairagon AAAAAGAAGCTTAAGCGGCAGAGGGAGGACGAGGAGGATGAGCTGGAGATCCCACCTCGGTACCAAG aacttacttgagttgcttgatcgacagccacctgtcccccccccccctagAAGAAGAAGCTTAAGCGGCAAAGGGAAGACGAGGAGGATGAACTGGAGATCCCAACACGGTATCAAGgtaaggtatccatccattcctcgggtgtgagtcagcgtccatatctggct Alignment from Exonerate_protein2genome AAAAAGAAGCTTAAGCGGCAGAGGGAGGACGAGGAGGATGAGCTGGAGATCCCACCTCGGTACCAAG aacttacttgagttgcttgatcgacagccacctgtcccccccccccctagAAGAAGAAGCTTAAGCGGCAAAGGGAAGACGAGGAGGATGAACTGGAGATCCCAACACGGTATCAAGgtaaggtatccatccattcctcgggtgtgagtcagcgtccatatctggct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AAAAAGAAGCTTAAGCGGCAGAGGGAGGACGAGGAGGATGAGCTGGAGATCCCACCTCGGTACCAAG aacttacttgagttgcttgatcgacagccacctgtcccccccccccctagAAGAAGAAGCTTAAGCGGCAAAGGGAAGACGAGGAGGATGAACTGGAGATCCCAACACGGTATCAAGgtaaggtatccatccattcctcgggtgtgagtcagcgtccatatctggct #### Rrp12_ID8301_22 --> 0 - 0 Original Alignment CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagacaaacagccaggggggcttttttaatatttattttgtagCCC---CTAAAATGTCTCATACATATTGTGAAAACACTGTTAGCTGAACATGAAGAATTCATAGCTGCTTTGATCCCTGAGgtaagttggtaggtcagactctggactcctgaagccaaacctgaggaggg Alignment from CESAR CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagacaaacagccaggggggcttttttaatatttattttgtagCCC---CTAAAATGTCTCATACATATTGTGAAAACACTGTTAGCTGAACATGAAGAATTCATAGCTGCTTTGATCCCTGAGgtaagttggtaggtcagactctggactcctgaagccaaacctgaggaggg Alignment from Spaln_aa2Genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagacaaacagccaggggggcttttttaatatttattttgtagCCC---CTAAAATGTCTCATACATATTGTGAAAACACTGTTAGCTGAACATGAAGAATTCATAGCTGCTTTGATCCCTGAGgtaagttggtaggtcagactctggactcctgaagccaaacctgaggaggg Alignment from Spaln_nt2Genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagacaaacagccaggggggcttttttaatatttattttgtagCCCC---TAAAATGTCTCATACATATTGTGAAAACACTGTTAGCTGAACATGAAGAATTCATAGCTGCTTTGATCCCTGAGgtaagttggtaggtcagactctggactcctgaagccaaacctgaggaggg Alignment from Pairagon CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagacaaacagccaggggggcttttttaatatttattttgtagCCCC---TAAAATGTCTCATACATATTGTGAAAACACTGTTAGCTGAACATGAAGAATTCATAGCTGCTTTGATCCCTGAGgtaagttggtaggtcagactctggactcctgaagccaaacctgaggaggg Alignment from Exonerate_protein2genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagacaaacagccaggggggcttttttaatatttattttgtagCCC---CTAAAATGTCTCATACATATTGTGAAAACACTGTTAGCTGAACATGAAGAATTCATAGCTGCTTTGATCCCTGAGgtaagttggtaggtcagactctggactcctgaagccaaacctgaggaggg Alignment from Exonerate_coding2genome gaatggttagacaaacagccaggggggcttttttaatatttattttgtagcccctaaaatgtctcatacatattgtgaaaacactgttagctgaacatgaagaattcatagctgctttgatccctgaggtaagttggtaggtcagactctggactcctgaagccaaacctgaggaggg Alignment from GeneWise CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagacaaacagccaggggggcttttttaatatttattttgtagCCC---CTAAAATGTCTCATACATATTGTGAAAACACTGTTAGCTGAACATGAAGAATTCATAGCTGCTTTGATCCCTGAGgtaagttggtaggtcagactctggactcctgaagccaaacctgaggaggg #### Rrp12_ID8303_20 --> 1 - 0 Original Alignment aTTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG catggagaaaaagagaccatgttgtcctcctgtgtttggtttctgtgtagaTTGTCTGTT------------GTGGCGCTGGCTCCTTATTCAGATGAGGCTGCTAGTAGTAAGTTATACTCTAGCATCTGGCCCTACTTGGAGgtaaagtatccctgtctccattcatggaataaaaggcccaggtttcacat Alignment from CESAR aTTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG catggagaaaaagagaccatgttgtcctcctgtgtttggtttctgtgtagaTTGTCT------------GTTGTGGCGCTGGCTCCTTATTCAGATGAGGCTGCTAGTAGTAAGTTATACTCTAGCATCTGGCCCTACTTGGAGgtaaagtatccctgtctccattcatggaataaaaggcccaggtttcacat Alignment from Spaln_aa2Genome ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG catggagaaaaagagaccatgttgtcctcctgtgtttggtttctgtgtagATTGTCT------------GTTGTGGCGCTGGCTCCTTATTCAGATGAGGCTGCTAGTAGTAAGTTATACTCTAGCATCTGGCCCTACTTGGAGgtaaagtatccctgtctccattcatggaataaaaggcccaggtttcacat Alignment from Spaln_nt2Genome CCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG catggagaaaaagagaccatgttgtcctcctgtgtttggtttctgtgtagATTG--TCT-GTTGTGGCGCTGGCTCCTTATTCAGATGAGGCTGCTAGTAGTAAGTTATACTCTAGCATCTGGCCCTACTTGGAGgtaaagtatccctgtctccattcatggaataaaaggcccaggtttcacat Alignment from Pairagon ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG catggagaaaaagagaccatgttgtcctcctgtgtttggtttctgtgtagATTGTCT------------GTTGTGGCGCTGGCTCCTTATTCAGATGAGGCTGCTAGTAGTAAGTTATACTCTAGCATCTGGCCCTACTTGGAGgtaaagtatccctgtctccattcatggaataaaaggcccaggtttcacat Alignment from Exonerate_protein2genome ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG catggagaaaaagagaccatgttgtcctcctgtgtttgGTTTCTGTGTAGATTGTCTGTTGTGGCGCTGGCTCCTTATTCAGATGAGGCTGCTAGTAGTAAGTTATACTCTAGCATCTGGCCCTACTTGGAGgtaaagtatccctgtctccattcatggaataaaaggcccaggtttcacat Alignment from Exonerate_coding2genome catggagaaaaagagaccatgttgtcctcctgtgtttggtttctgtgtagattgtctgttgtggcgctggctccttattcagatgaggctgctagtagtaagttatactctagcatctggccctacttggaggtaaagtatccctgtctccattcatggaataaaaggcccaggtttcacat Alignment from GeneWise ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG catggagaaaaagagaccatgttgtcctcctgtgtttggtttctgtgtagATTGTCTGTT------------GTGGCGCTGGCTCCTTATTCAGATGAGGCTGCTAGTAGTAAGTTATACTCTAGCATCTGGCCCTACTTGGAGgtaaagtatccctgtctccattcatggaataaaaggcccaggtttcacat #### Rrp12_ID8304_19 --> 0 - 2 Original Alignment TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCag cagacgtagttaatggatgggtcttttattcgtggatatttgaactgcagCTGGTGAATAGCTTCCTAGATAAGGCAATTGAAAAGGTTCTTGACCCCCCCAGTTCAGATTTCACTaggtgagtctgctgagcttttcaggtgtcttggtatgtgatgcatggtacct Alignment from CESAR TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCag cagacgtagttaatggatgggtcttttattcgtggatatttgaactgcagCTGGTGAATAGCTTCCTAGATAAGGCAATTGAAAAGGTTCTTGACCCCCCCAGTTCAGATTTCACTaggtgagtctgctgagcttttcaggtgtcttggtatgtgatgcatggtacct Alignment from Spaln_aa2Genome TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG cagacgtagttaatggatgggtcttttattcgtggatatttgaactgcagCTGGTGAATAGCTTCCTAGATAAGGCAATTGAAAAGGTTCTTGACCCCCCCAGTTCAGATTTCACTAGgtgagtctgctgagcttttcaggtgtcttggtatgtgatgcatggtacct Alignment from Spaln_nt2Genome TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG cagacgtagttaatggatgggtcttttattcgtggatatttgaactgcagCTGGTGAATAGCTTCCTAGATAAGGCAATTGAAAAGGTTCTTGACCCCCCCAGTTCAGATTTCACTAGgtgagtctgctgagcttttcaggtgtcttggtatgtgatgcatggtacct Alignment from Pairagon TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG cagacgtagttaatggatgggtcttttattcgtggatatttgaactgcagCTGGTGAATAGCTTCCTAGATAAGGCAATTGAAAAGGTTCTTGACCCCCCCAGTTCAGATTTCACTAGgtgagtctgctgagcttttcaggtgtcttggtatgtgatgcatggtacct Alignment from Exonerate_protein2genome TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG cagacgtagttaatggatgggtcttttattcgtggatatttgaactgcagCTGGTGAATAGCTTCCTAGATAAGGCAATTGAAAAGGTTCTTGACCCCCCCAGTTCAGATTTCACTAGgtgagtctgctgagcttttcaggtgtcttggtatgtgatgcatggtacct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG cagacgtagttaatggatgggtcttttattcgtggatatttgaactgcagCTGGTGAATAGCTTCCTAGATAAGGCAATTGAAAAGGTTCTTGACCCCCCCAGTTCAGATTTCACTAGgtgagtctgctgagcttttcaggtgtcttggtatgtgatgcatggtacct #### Rrp12_ID8305_18 --> 2 - 0 Original Alignment agGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGG---CAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttgttatgtgacttccctagtccaaatgattttccctcttcttcctagagGCAGACCGGGCTGACGTGAGTTGTTTTGCCAAGAACTCTCTGCCAATCCTCTTTAACTTGTATGGGCAACAACCAGTTGCAGCTGGAGAAACAGCC---CCCCGTCGTACTGTGCTGGAG---ATCAAAAGTTACCTCAGTGTAACTGAATCACAGgtgaggactgtaccgtggaatggtcaacaatccttccaaggagatgtcct Alignment from CESAR agGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGG---CAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttgttatgtgacttccctagtccaaatgattttccctcttcttcctagagGCAGACCGGGCTGACGTGAGTTGTTTTGCCAAGAACTCTCTGCCAATCCTCTTTAACTTGTATGGGCAACAACCAGTTGCAGCTGGAGAA---ACAGCCCCCCGTCGTACTGTGCTGGAG---ATCAAAAGTTACCTCAGTGTAACTGAATCACAGgtgaggactgtaccgtggaatggtcaacaatccttccaaggagatgtcct Alignment from Spaln_aa2Genome AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttgttatgtgacttccctagtccaaatgattttccctcttcttcctagAGGCAGACCGGGCTGACGTGAGTTGTTTTGCCAAGAACTCTCTGCCAATCCTCTTTAACTTGTATGGGCAACAACCAGTTGCAGCTGGAGAAACAGCCCCCCGTCGTACTGTGCTGGAG---ATCAAAAGTTACCTCAGTGTAACTGAATCACAGgtgaggactgtaccgtggaatggtcaacaatccttccaaggagatgtcct Alignment from Spaln_nt2Genome AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGC---CTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttgttatgtgacttccctagtccaaatgattttccctcttcttcctagAGGCAGACCGGGCTGACGTGAGTTGTTTTGCCAAGAACTCTCTGCCAATCCTCTTTAACTTGTATGGGCAACAACCAGTTGCAGCTGGAGA---AACAGCCCCCCGTCGTACTGTGCTGGA---GATCAAAAGTTACCTCAGTGTAACTGAATCACAGgtgaggactgtaccgtggaatggtcaacaatccttccaaggagatgtcct Alignment from Pairagon AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGG---CAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttgttatgtgacttccctagtccaaatgattttccctcttcttcctagAGGCAGACCGGGCTGACGTGAGTTGTTTTGCCAAGAACTCTCTGCCAATCCTCTTTAACTTGTATGGGCAACAACCAGTTGCAGCTGGAGA---AACAGCCCCCCGTCGTACTGTGCTGGA---GATCAAAAGTTACCTCAGTGTAACTGAATCACAGgtgaggactgtaccgtggaatggtcaacaatccttccaaggagatgtcct Alignment from Exonerate_protein2genome AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttgttatgtgacttccctagtccaaatgattttccctcttcttcctagAGGCAGACCGGGCTGACGTGAGTTGTTTTGCCAAGAACTCTCTGCCAATCCTCTTTAACTTGTATGGGCAACAACCAGTTGCAGCTGGAGAAACAGCCCCCCGTCGTACTGTGCTGGAG---ATCAAAAGTTACCTCAGTGTAACTGAATCACAGgtgaggactgtaccgtggaatggtcaacaatccttccaaggagatgtcct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAG---CCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttgttatgtgacttccctagtccaaatgattttccctcttcttcctagAGGCAGACCGGGCTGACGTGAGTTGTTTTGCCAAGAACTCTCTGCCAATCCTCTTTAACTTGTATGGGCAACAACCAGTTGCAGCTGGAGAAACAGCC---CCCCGTCGTACTGTGCTGGAG---ATCAAAAGTTACCTCAGTGTAACTGAATCACAGgtgaggactgtaccgtggaatggtcaacaatccttccaaggagatgtcct #### Rrp12_ID8306_17 --> 0 - 1 Original Alignment ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAg caagggctgagcatatctgtgaagtattaatttcctgtttccttctgcagATCTGGACCCTCCAGCCTGGGTTCTGCACTAGGCCTACAGAAGTGGCTGCCTCTTTCAAAGGCCTGGCACGTGCTTTGGGGACAGCTATTAATGAATGTCCAGACTTGAGAGTTAGTGTATGCCAAGGTCTACGCACTCTCATCACCAAGGGCTATGAGGCAggtgaggaggacacctgttggtgcggtgacctgagttggatgacctgggat Alignment from CESAR ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAg caagggctgagcatatctgtgaagtattaatttcctgtttccttctgcagATCTGGACCCTCCAGCCTGGGTTCTGCACTAGGCCTACAGAAGTGGCTGCCTCTTTCAAAGGCCTGGCACGTGCTTTGGGGACAGCTATTAATGAATGTCCAGACTTGAGAGTTAGTGTATGCCAAGGTCTACGCACTCTCATCACCAAGGGCTATGAGGCAggtgaggaggacacctgttggtgcggtgacctgagttggatgacctgggat Alignment from Spaln_aa2Genome ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAG caagggctgagcatatctgtgaagtattaatttcctgtttccttctgcagATCTGGACCCTCCAGCCTGGGTTCTGCACTAGGCCTACAGAAGTGGCTGCCTCTTTCAAAGGCCTGGCACGTGCTTTGGGGACAGCTATTAATGAATGTCCAGACTTGAGAGTTAGTGTATGCCAAGGTCTACGCACTCTCATCACCAAGGGCTATGAGGCAGgtgaggaggacacctgttggtgcggtgacctgagttggatgacctgggat Alignment from Spaln_nt2Genome ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAG caagggctgagcatatctgtgaagtattaatttcctgtttccttctgcagATCTGGACCCTCCAGCCTGGGTTCTGCACTAGGCCTACAGAAGTGGCTGCCTCTTTCAAAGGCCTGGCACGTGCTTTGGGGACAGCTATTAATGAATGTCCAGACTTGAGAGTTAGTGTATGCCAAGGTCTACGCACTCTCATCACCAAGGGCTATGAGGCAGgtgaggaggacacctgttggtgcggtgacctgagttggatgacctgggat Alignment from Pairagon ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAG caagggctgagcatatctgtgaagtattaatttcctgtttccttctgcagATCTGGACCCTCCAGCCTGGGTTCTGCACTAGGCCTACAGAAGTGGCTGCCTCTTTCAAAGGCCTGGCACGTGCTTTGGGGACAGCTATTAATGAATGTCCAGACTTGAGAGTTAGTGTATGCCAAGGTCTACGCACTCTCATCACCAAGGGCTATGAGGCAGgtgaggaggacacctgttggtgcggtgacctgagttggatgacctgggat Alignment from Exonerate_protein2genome ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAG caagggctgagcatatctgtgaagtattaatttcctgtttccttctgcagATCTGGACCCTCCAGCCTGGGTTCTGCACTAGGCCTACAGAAGTGGCTGCCTCTTTCAAAGGCCTGGCACGTGCTTTGGGGACAGCTATTAATGAATGTCCAGACTTGAGAGTTAGTGTATGCCAAGGTCTACGCACTCTCATCACCAAGGGCTATGAGGCAGgtgaggaggacacctgttggtgcggtgacctgagttggatgacctgggat Alignment from Exonerate_coding2genome caagggctgagcatatctgtgaagtattaatttcctgtttccttctgcagatctggaccctccagcctgggttctgcactaggcctacagaagtggctgcctctttcaaaggcctggcacgtgctttggggacagctattaatgaatgtccagacttgagagttagtgtatgccaaggtctacgcactctcatcaccaagggctatgaggcaggtgaggaggacacctgttggtgcggtgacctgagttggatgacctgggat Alignment from GeneWise -----------------------------------------------CAGATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAG CAAGGGCTGAGCATATCTGTGAAGTATTAATTTCCTGTTTCCTTCTGCAGATCTGGACCCTCCAGCCTGGGTTCTGCACTAGGCCTACAGAAGTGGCTGCCTCTTTCAAAGGCCTGGCACGTGCTTTGGGGACAGCTATTAATGAATGTCCAGACTTGAGAGTTAGTGTATGCCAAGGTCTACGCACTCTCATCACCAAGGGCTATGAGGCAGgtgaggaggacacctgttggtgcggtgacctgagttggatgacctgggat #### Rrp12_ID8307_16 --> 2 - 0 Original Alignment caATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG ccaccaaaaagtacatgacactacctattgatgtgctcttccaaccccagcaATGGATCTAGCTCAAGCC------ACAGTGGAGTCCAAGATT---GATACACTCCAGTGGCAAgtgagtgccaactgggaactgacaagggctgagcatatctgtgaagtatt Alignment from CESAR caATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG ccaccaaaaagtacatgacactacctattgatgtgctcttccaaccccagcaATGGATCTAGCTCAAGCC------ACAGTGGAGTCCAAGATT---GATACACTCCAGTGGCAAgtgagtgccaactgggaactgacaagggctgagcatatctgtgaagtatt Alignment from Spaln_aa2Genome CAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG ccaccaaaaagtacatgacactacctattgatgtgctcttccaaccccagCAATGGATCTAGCTCAAGCC------ACAGTGGAGTCCAAGATT---GATACACTCCAGTGGCAAgtgagtgccaactgggaactgacaagggctgagcatatctgtgaagtatt Alignment from Spaln_nt2Genome CAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG ccaccaaaaagtacatgacactacctattgatgtgctcttccaaccccagCAATGGATCTAGCTCAAGC------CACAGTGGAGTCCAAGATTG---ATACACTCCAGTGGCAAgtgagtgccaactgggaactgacaagggctgagcatatctgtgaagtatt Alignment from Pairagon CAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG ccaccaaaaagtacatgacactacctattgatgtgctcttccaaccccagCAATGGATCTAGCTCAAGC------CACAGTGGAGTCCAAGAT---TGATACACTCCAGTGGCAAgtgagtgccaactgggaactgacaagggctgagcatatctgtgaagtatt Alignment from Exonerate_protein2genome CAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG ccaccaaaaagtacatgacactacctattgatgtgctcttccaaccccagCAATGGATCTAGCTCAAGCC------ACAGTGGAGTCCAAGATT---GATACACTCCAGTGGCAAgtgagtgccaactgggaactgacaagggctgagcatatctgtgaagtatt Alignment from Exonerate_coding2genome ccaccaaaaagtacatgacactacctattgatgtgctcttccaaccccagcaatggatctagctcaagccacagtggagtccaagattgatacactccagtggcaagtgagtgccaactgggaactgacaagggctgagcatatctgtgaagtatt Alignment from GeneWise CAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG ccaccaaaaagtacatgacactacctattgatgtgctcttccaaccccagCAATGGATCTAGCTCAAGCC------ACAGTGGAGTCCAAGATT---GATACACTCCAGTGGCAAgtgagtgccaactgggaactgacaagggctgagcatatctgtgaagtatt #### Rrp12_ID8314_9 --> 0 - 0 Original Alignment CTTGTGACAGCCTGTGCCATGCAGGCCTTCCATAACCTCTTCCATGCCAAGCCCAGCCCTAGCACCCTGTCAGCAGAACTCAACGCCCAGATCGTCACG aggtgtctatggctttatatctatgcactgcccgcttttgtctcccacagCTTATAACAGCTTGTCCCATGAAGGCCTTCCATAACTTGTTCCATGCCAAGCCCAGTCCTAGCACATTGTCTGCAGAGCTCAACACCCAGCTTTTTGCAgtgatatcagatgttgcagtgagcaaattctagcaaagtctctgttcccc Alignment from CESAR CTTGTGACAGCCTGTGCCATGCAGGCCTTCCATAACCTCTTCCATGCCAAGCCCAGCCCTAGCACCCTGTCAGCAGAACTCAACGCCCAGATCGTCACG aggtgtctatggctttatatctatgcactgcccgcttttgtctcccacagCTTATAACAGCTTGTCCCATGAAGGCCTTCCATAACTTGTTCCATGCCAAGCCCAGTCCTAGCACATTGTCTGCAGAGCTCAACACCCAGCTTTTTGCAgtgatatcagatgttgcagtgagcaaattctagcaaagtctctgttcccc Alignment from Spaln_aa2Genome CTTGTGACAGCCTGTGCCATGCAGGCCTTCCATAACCTCTTCCATGCCAAGCCCAGCCCTAGCACCCTGTCAGCAGAACTCAACGCCCAGATCGTCACG aggtgtctatggctttatatctatgcactgcccgcttttgtctcccacagCTTATAACAGCTTGTCCCATGAAGGCCTTCCATAACTTGTTCCATGCCAAGCCCAGTCCTAGCACATTGTCTGCAGAGCTCAACACCCAGCTTTTTGCAgtgatatcagatgttgcagtgagcaaattctagcaaagtctctgttcccc Alignment from Spaln_nt2Genome CTTGTGACAGCCTGTGCCATGCAGGCCTTCCATAACCTCTTCCATGCCAAGCCCAGCCCTAGCACCCTGTCAGCAGAACTCAACGCCCAGATCGTCACG aggtgtctatggctttatatctatgcactgcccgcttttgtctcccacagCTTATAACAGCTTGTCCCATGAAGGCCTTCCATAACTTGTTCCATGCCAAGCCCAGTCCTAGCACATTGTCTGCAGAGCTCAACACCCAGCTTTTTGCAgtgatatcagatgttgcagtgagcaaattctagcaaagtctctgttcccc Alignment from Pairagon CTTGTGACAGCCTGTGCCATGCAGGCCTTCCATAACCTCTTCCATGCCAAGCCCAGCCCTAGCACCCTGTCAGCAGAACTCAACGCCCAGATCGTCACG aggtgtctatggctttatatctatgcactgcccgcttttgtctcccacagCTTATAACAGCTTGTCCCATGAAGGCCTTCCATAACTTGTTCCATGCCAAGCCCAGTCCTAGCACATTGTCTGCAGAGCTCAACACCCAGCTTTTTGCAgtgatatcagatgttgcagtgagcaaattctagcaaagtctctgttcccc Alignment from Exonerate_protein2genome CTTGTGACAGCCTGTGCCATGCAGGCCTTCCATAACCTCTTCCATGCCAAGCCCAGCCCTAGCACCCTGTCAGCAGAACTCAACGCCCAGATCGTCACG aggtgtctatggctttatatctatgcactgcccgcttttgtctcccacagCTTATAACAGCTTGTCCCATGAAGGCCTTCCATAACTTGTTCCATGCCAAGCCCAGTCCTAGCACATTGTCTGCAGAGCTCAACACCCAGCTTTTTGCAgtgatatcagatgttgcagtgagcaaattctagcaaagtctctgttcccc Alignment from Exonerate_coding2genome CTTGTGACAGCCTGTGCCATGCAGGCCTTCCATAACCTCTTCCATGCCAAGCCCAGCCCTAGCACCCTGTCAGCAGAACTCAACGCCCAGATCGTCACG aggtgtctatggctttatatctatgcactgcccgcttttgtctcccacagCTTATAACAGCTTGTCCCATGAAGGCCTTCCATAACTTGTTCCATGCCAAGCCCAGTCCTAGCACATTGTCTGCAGAGCTCAACACCCAGCTTTTTGCAgtgatatcagatgttgcagtgagcaaattctagcaaagtctctgttcccc Alignment from GeneWise CTTGTGACAGCCTGTGCCATGCAGGCCTTCCATAACCTCTTCCATGCCAAGCCCAGCCCTAGCACCCTGTCAGCAGAACTCAACGCCCAGATCGTCACG aggtgtctatggctttatatctatgcactgcccgcttttgtctcccacagCTTATAACAGCTTGTCCCATGAAGGCCTTCCATAACTTGTTCCATGCCAAGCCCAGTCCTAGCACATTGTCTGCAGAGCTCAACACCCAGCTTTTTGCAgtgatatcagatgttgcagtgagcaaattctagcaaagtctctgttcccc #### Rrp12_ID8316_7 --> 0 - 1 Original Alignment ATCCGTAAGGCTGCTCAGCACGGAGTGTGCTCAGTTCTCAAGGGCAGTGACTTCATGTTTGGTGAAAAGGCCCCTGCCCATCATCCTGCTGCCGTCTCCACTGCCAAGTTCTGCATCCAGGAGATTGAGAAGTCTGGAg tactcttttgggctgttaatgacggtgggctcacttatcaaatcctacagATCCATAAGGCTGCTCAGCATGGTGTGAGTTCGGTTCTCAAGGGGAGTGACTTTATGTTCGGTGAAAAAGCCCTAGCCCATCATCCTGCTGCTGTCTCCACCGCTAAGTTTTGCATCCAGGAAATTGAGAAGTCTGGAggttggtttaccaagggccaagagtaagtgagaaacaagagtagctgtaag Alignment from CESAR ATCCGTAAGGCTGCTCAGCACGGAGTGTGCTCAGTTCTCAAGGGCAGTGACTTCATGTTTGGTGAAAAGGCCCCTGCCCATCATCCTGCTGCCGTCTCCACTGCCAAGTTCTGCATCCAGGAGATTGAGAAGTCTGGAg tactcttttgggctgttaatgacggtgggctcacttatcaaatcctacagATCCATAAGGCTGCTCAGCATGGTGTGAGTTCGGTTCTCAAGGGGAGTGACTTTATGTTCGGTGAAAAAGCCCTAGCCCATCATCCTGCTGCTGTCTCCACCGCTAAGTTTTGCATCCAGGAAATTGAGAAGTCTGGAggttggtttaccaagggccaagagtaagtgagaaacaagagtagctgtaag Alignment from Spaln_aa2Genome ATCCGTAAGGCTGCTCAGCACGGAGTGTGCTCAGTTCTCAAGGGCAGTGACTTCATGTTTGGTGAAAAGGCCCCTGCCCATCATCCTGCTGCCGTCTCCACTGCCAAGTTCTGCATCCAGGAGATTGAGAAGTCTGGAG tactcttttgggctgttaatgacggtgggctcacttatcaaatcctacagATCCATAAGGCTGCTCAGCATGGTGTGAGTTCGGTTCTCAAGGGGAGTGACTTTATGTTCGGTGAAAAAGCCCTAGCCCATCATCCTGCTGCTGTCTCCACCGCTAAGTTTTGCATCCAGGAAATTGAGAAGTCTGGAGgttggtttaccaagggccaagagtaagtgagaaacaagagtagctgtaag Alignment from Spaln_nt2Genome ATCCGTAAGGCTGCTCAGCACGGAGTGTGCTCAGTTCTCAAGGGCAGTGACTTCATGTTTGGTGAAAAGGCCCCTGCCCATCATCCTGCTGCCGTCTCCACTGCCAAGTTCTGCATCCAGGAGATTGAGAAGTCTGGAG tactcttttgggctgttaatgacggtgggctcacttatcaaatcctacagATCCATAAGGCTGCTCAGCATGGTGTGAGTTCGGTTCTCAAGGGGAGTGACTTTATGTTCGGTGAAAAAGCCCTAGCCCATCATCCTGCTGCTGTCTCCACCGCTAAGTTTTGCATCCAGGAAATTGAGAAGTCTGGAGgttggtttaccaagggccaagagtaagtgagaaacaagagtagctgtaag Alignment from Pairagon ATCCGTAAGGCTGCTCAGCACGGAGTGTGCTCAGTTCTCAAGGGCAGTGACTTCATGTTTGGTGAAAAGGCCCCTGCCCATCATCCTGCTGCCGTCTCCACTGCCAAGTTCTGCATCCAGGAGATTGAGAAGTCTGGAG tactcttttgggctgttaatgacggtgggctcacttatcaaatcctacagATCCATAAGGCTGCTCAGCATGGTGTGAGTTCGGTTCTCAAGGGGAGTGACTTTATGTTCGGTGAAAAAGCCCTAGCCCATCATCCTGCTGCTGTCTCCACCGCTAAGTTTTGCATCCAGGAAATTGAGAAGTCTGGAGgttggtttaccaagggccaagagtaagtgagaaacaagagtagctgtaag Alignment from Exonerate_protein2genome ATCCGTAAGGCTGCTCAGCACGGAGTGTGCTCAGTTCTCAAGGGCAGTGACTTCATGTTTGGTGAAAAGGCCCCTGCCCATCATCCTGCTGCCGTCTCCACTGCCAAGTTCTGCATCCAGGAGATTGAGAAGTCTGGAG tactcttttgggctgttaatgacggtgggctcacttatcaaatcctacagATCCATAAGGCTGCTCAGCATGGTGTGAGTTCGGTTCTCAAGGGGAGTGACTTTATGTTCGGTGAAAAAGCCCTAGCCCATCATCCTGCTGCTGTCTCCACCGCTAAGTTTTGCATCCAGGAAATTGAGAAGTCTGGAGgttggtttaccaagggccaagagtaagtgagaaacaagagtagctgtaag Alignment from Exonerate_coding2genome ATCCGTAAGGCTGCTCAGCACGGAGTGTGCTCAGTTCTCAAGGGCAGTGACTTCATGTTTGGTGAAAAGGCCCCTGCCCATCATCCTGCTGCCGTCTCCACTGCCAAGTTCTGCATCCAGGAGATTGAGAAGTCTGGAG tactcttttgggctgttaatgacggtgggctcacttatcaaatcctacagATCCATAAGGCTGCTCAGCATGGTGTGAGTTCGGTTCTCAAGGGGAGTGACTTTATGTTCGGTGAAAAAGCCCTAGCCCATCATCCTGCTGCTGTCTCCACCGCTAAGTTTTGCATCCAGGAAATTGAGAAGTCTGGAGgttggtttaccaagggccaagagtaagtgagaaacaagagtagctgtaag Alignment from GeneWise ATCCGTAAGGCTGCTCAGCACGGAGTGTGCTCAGTTCTCAAGGGCAGTGACTTCATGTTTGGTGAAAAGGCCCCTGCCCATCATCCTGCTGCCGTCTCCACTGCCAAGTTCTGCATCCAGGAGATTGAGAAGTCTGGAG tactcttttgggctgttaatgacggtgggctcacttatcaaatcctacagATCCATAAGGCTGCTCAGCATGGTGTGAGTTCGGTTCTCAAGGGGAGTGACTTTATGTTCGGTGAAAAAGCCCTAGCCCATCATCCTGCTGCTGTCTCCACCGCTAAGTTTTGCATCCAGGAAATTGAGAAGTCTGGAGgttggtttaccaagggccaagagtaagtgagaaacaagagtagctgtaag #### Rrp12_ID8319_4 --> 0 - 2 Original Alignment ATGACAACAATGGAAGCAGTGGAGTCCCCAGAGTCACTGGCTGCCGTTGCATACCTATTGAACCTTGTCCTGAAGcg gtatgcataatatgtgctttcttagctctcagtgctctcttctttcttagATGACAACGATGGAAGCAGTGGAGTCCCCAGAGACATTGGCGGCCGTTGCATACCTATTAAACCTTGTCCTGAAGcggtgagtggcgctgcgggcactgtgcacagcatagatgggcgactgagtgt Alignment from CESAR ATGACAACAATGGAAGCAGTGGAGTCCCCAGAGTCACTGGCTGCCGTTGCATACCTATTGAACCTTGTCCTGAAGcg gtatgcataatatgtgctttcttagctctcagtgctctcttctttcttagATGACAACGATGGAAGCAGTGGAGTCCCCAGAGACATTGGCGGCCGTTGCATACCTATTAAACCTTGTCCTGAAGcggtgagtggcgctgcgggcactgtgcacagcatagatgggcgactgagtgt Alignment from Spaln_aa2Genome ATGACAACAATGGAAGCAGTGGAGTCCCCAGAGTCACTGGCTGCCGTTGCATACCTATTGAACCTTGTCCTGAAGCG gtatgcataatatgtgctttcttagctctcagtgctctcttctttcttagATGACAACGATGGAAGCAGTGGAGTCCCCAGAGACATTGGCGGCCGTTGCATACCTATTAAACCTTGTCCTGAAGCGgtgagtggcgctgcgggcactgtgcacagcatagatgggcgactgagtgt Alignment from Spaln_nt2Genome ATGACAACAATGGAAGCAGTGGAGTCCCCAGAGTCACTGGCTGCCGTTGCATACCTATTGAACCTTGTCCTGAAGCG gtatgcataatatgtgctttcttagctctcagtgctctcttctttcttagATGACAACGATGGAAGCAGTGGAGTCCCCAGAGACATTGGCGGCCGTTGCATACCTATTAAACCTTGTCCTGAAGCGgtgagtggcgctgcgggcactgtgcacagcatagatgggcgactgagtgt Alignment from Pairagon ATGACAACAATGGAAGCAGTGGAGTCCCCAGAGTCACTGGCTGCCGTTGCATACCTATTGAACCTTGTCCTGAAGCG gtatgcataatatgtgctttcttagctctcagtgctctcttctttcttagATGACAACGATGGAAGCAGTGGAGTCCCCAGAGACATTGGCGGCCGTTGCATACCTATTAAACCTTGTCCTGAAGCGgtgagtggcgctgcgggcactgtgcacagcatagatgggcgactgagtgt Alignment from Exonerate_protein2genome ATGACAACAATGGAAGCAGTGGAGTCCCCAGAGTCACTGGCTGCCGTTGCATACCTATTGAACCTTGTCCTGAAGCG gtatgcataatatgtgctttcttagctctcagtgctctcttctttcttagATGACAACGATGGAAGCAGTGGAGTCCCCAGAGACATTGGCGGCCGTTGCATACCTATTAAACCTTGTCCTGAAGCGgtgagtggcgctgcgggcactgtgcacagcatagatgggcgactgagtgt Alignment from Exonerate_coding2genome ATGACAACAATGGAAGCAGTGGAGTCCCCAGAGTCACTGGCTGCCGTTGCATACCTATTGAACCTTGTCCTGAAGCG gtatgcataatatgtgctttcttagctctcagtgctctcttctttcttagATGACAACGATGGAAGCAGTGGAGTCCCCAGAGACATTGGCGGCCGTTGCATACCTATTAAACCTTGTCCTGAAGCGgtgagtggcgctgcgggcactgtgcacagcatagatgggcgactgagtgt Alignment from GeneWise ATGACAACAATGGAAGCAGTGGAGTCCCCAGAGTCACTGGCTGCCGTTGCATACCTATTGAACCTTGTCCTGAAGCG gtatgcataatatgtgctttcttagctctcagtgctctcttctttcttagATGACAACGATGGAAGCAGTGGAGTCCCCAGAGACATTGGCGGCCGTTGCATACCTATTAAACCTTGTCCTGAAGCGgtgagtggcgctgcgggcactgtgcacagcatagatgggcgactgagtgt #### Sart1_ID958_17 --> 1 - 0 Original Alignment gGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG caagaaagaagtcttcagaggacctgatttgtgttttgtgttttctttaggGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACTCAGGACTTTAAGGAGAGAGACGGGTATAAGCCTGATGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCTGAAAAGgtaggcagagactttgtagataatcaatccacttacaatggtgtatggca Alignment from CESAR gGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG caagaaagaagtcttcagaggacctgatttgtgttttgtgttttctttaggGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACTCAGGACTTTAAGGAGAGAGACGGGTATAAGCCTGATGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCTGAAAAGgtaggcagagactttgtagataatcaatccacttacaatggtgtatggca Alignment from Spaln_aa2Genome GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG caagaaagaagtcttcagaggacctgatttgtgttttgtgttttctttagGGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACTCAGGACTTTAAGGAGAGAGACGGGTATAAGCCTGATGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCTGAAAAGgtaggcagagactttgtagataatcaatccacttacaatggtgtatggca Alignment from Spaln_nt2Genome GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG caagaaagaagtcttcagaggacctgatttgtgttttgtgttttctttagGGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACTCAGGACTTTAAGGAGAGAGACGGGTATAAGCCTGATGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCTGAAAAGgtaggcagagactttgtagataatcaatccacttacaatggtgtatggca Alignment from Pairagon GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG caagaaagaagtcttcagaggacctgatttgtgttttgtgttttctttagGGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACTCAGGACTTTAAGGAGAGAGACGGGTATAAGCCTGATGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCTGAAAAGgtaggcagagactttgtagataatcaatccacttacaatggtgtatggca Alignment from Exonerate_protein2genome GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG caagaaagaagtcttcagaggacctgatttgtgttttgtgttttctttagGGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACTCAGGACTTTAAGGAGAGAGACGGGTATAAGCCTGATGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCTGAAAAGgtaggcagagactttgtagataatcaatccacttacaatggtgtatggca Alignment from Exonerate_coding2genome GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG caagaaagaagtcttcagaggacctgatttgtgttttgtgttttctttagGGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACTCAGGACTTTAAGGAGAGAGACGGGTATAAGCCTGATGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCTGAAAAGgtaggcagagactttgtagataatcaatccacttacaatggtgtatggca Alignment from GeneWise GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG caagaaagaagtcttcagaggacctgatttgtgttttgtgttttctttagGGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACTCAGGACTTTAAGGAGAGAGACGGGTATAAGCCTGATGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCTGAAAAGgtaggcagagactttgtagataatcaatccacttacaatggtgtatggca #### Sart1_ID964_11 --> 1 - 1 Original Alignment gCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAg tatgagatggagaaattcaaaaaacatagctatggttctggtcttggcagaCTTCGGGGCCGGGGTAGGCACCAAGTTCCC------AAGGAGGAGACACTTGAGGATGAGGAGAAGGACCTTGTAGCCAAACCACCTCCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAggtgaagtgttgattaataggggtcagggtaaatatgcaggcaaggctatc Alignment from CESAR gCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAg tatgagatggagaaattcaaaaaacatagctatggttctggtcttggcagaCTTCGGGGCCGGGGTAGGCACCAAGTTCCC------AAGGAGGAGACACTTGAGGATGAGGAGAAGGACCTTGTAGCCAAACCACCTCCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAggtgaagtgttgattaataggggtcagggtaaatatgcaggcaaggctatc Alignment from Spaln_aa2Genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG tatgagatggagaaattcaaaaaacatagctatggttctggtcttggcagACTTCGGGGCCGGGGTAGGCACCAAGTTCCC------AAGGAGGAGACACTTGAGGATGAGGAGAAGGACCTTGTAGCCAAACCACCTCCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtgaagtgttgattaataggggtcagggtaaatatgcaggcaaggctatc Alignment from Spaln_nt2Genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG tatgagatggagaaattcaaaaaacatagctatggttctggtcttggcagACTTCGGGGCCGGGGTAGGCACCAAGTTCC------CAAGGAGGAGACACTTGAGGATGAGGAGAAGGACCTTGTAGCCAAACCACCTCCATCAGATGACACTCGAGT------CATGGACATCAGTGATGAAGgtgaagtgttgattaataggggtcagggtaaatatgcaggcaaggctatc Alignment from Pairagon GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG tatgagatggagaaattcaaaaaacatagctatggttctggtcttggcagACTTCGGGGCCGGGGTAGGCACCAAGTTCCC------AAGGAGGAGACACTTGAGGATGAGGAGAAGGACCTTGTAGCCAAACCACCTCCATCAGATGACACTCGAGT------CATGGACATCAGTGATGAAGgtgaagtgttgattaataggggtcagggtaaatatgcaggcaaggctatc Alignment from Exonerate_protein2genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG tatgagatggagaaattcaaaaaacatagctatggttctggtcttggcagACTTCGGGGCCGGGGTAGGCACCAAGTTCCC------AAGGAGGAGACACTTGAGGATGAGGAGAAGGACCTTGTAGCCAAACCACCTCCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtgaagtgttgattaataggggtcagggtaaatatgcaggcaaggctatc Alignment from Exonerate_coding2genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG tatgagatggagaaattcaaaaaacatagctatggttctggtcttggcagACTTCGGGGCCGGGGTAGGCACCAAGTTCCC------AAGGAGGAGACACTTGAGGATGAGGAGAAGGACCTTGTAGCCAAACCACCTCCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtgaagtgttgattaataggggtcagggtaaatatgcaggcaaggctatc Alignment from GeneWise GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG tatgagatggagaaattcaaaaaacatagctatggttctggtcttggcagACTTCGGGGCCGGGGTAGGCACCAAGTTCCCAAG------GAGGAGACACTTGAGGATGAGGAGAAGGACCTTGTAGCCAAACCACCTCCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtgaagtgttgattaataggggtcagggtaaatatgcaggcaaggctatc #### Sart1_ID969_6 --> 0 - 0 Original Alignment GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ctacccgttaatttacccaacccttttcccccccttccatctccctgcagGCTAAGCTGTTGGAGGAAATGGGTCAAAAGTTTGGTGTGAGCACATTAGTTGAGGAAGAGTTTGAGCAGAAGCGACAGgtaagcacccacttgccagaattatctggtagtcacaatttctattttga Alignment from CESAR GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ctacccgttaatttacccaacccttttcccccccttccatctccctgcagGCTAAGCTGTTGGAGGAAATGGGTCAAAAGTTTGGTGTGAGCACATTAGTTGAGGAAGAGTTTGAGCAGAAGCGACAGgtaagcacccacttgccagaattatctggtagtcacaatttctattttga Alignment from Spaln_aa2Genome GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ctacccgttaatttacccaacccttttcccccccttccatctccctgcagGCTAAGCTGTTGGAGGAAATGGGTCAAAAGTTTGGTGTGAGCACATTAGTTGAGGAAGAGTTTGAGCAGAAGCGACAGgtaagcacccacttgccagaattatctggtagtcacaatttctattttga Alignment from Spaln_nt2Genome GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ctacccgttaatttacccaacccttttcccccccttccatctccctgcagGCTAAGCTGTTGGAGGAAATGGGTCAAAAGTTTGGTGTGAGCACATTAGTTGAGGAAGAGTTTGAGCAGAAGCGACAGgtaagcacccacttgccagaattatctggtagtcacaatttctattttga Alignment from Pairagon GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ctacccgttaatttacccaacccttttcccccccttccatctccctgcagGCTAAGCTGTTGGAGGAAATGGGTCAAAAGTTTGGTGTGAGCACATTAGTTGAGGAAGAGTTTGAGCAGAAGCGACAGgtaagcacccacttgccagaattatctggtagtcacaatttctattttga Alignment from Exonerate_protein2genome GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ctacccgttaatttacccaacccttttcccccccttccatctccctgcagGCTAAGCTGTTGGAGGAAATGGGTCAAAAGTTTGGTGTGAGCACATTAGTTGAGGAAGAGTTTGAGCAGAAGCGACAGgtaagcacccacttgccagaattatctggtagtcacaatttctattttga Alignment from Exonerate_coding2genome GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ctacccgttaatttacccaacccttttcccccccttccatctccctgcagGCTAAGCTGTTGGAGGAAATGGGTCAAAAGTTTGGTGTGAGCACATTAGTTGAGGAAGAGTTTGAGCAGAAGCGACAGgtaagcacccacttgccagaattatctggtagtcacaatttctattttga Alignment from GeneWise GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ctacccgttaatttacccaacccttttcccccccttccatctccctgcagGCTAAGCTGTTGGAGGAAATGGGTCAAAAGTTTGGTGTGAGCACATTAGTTGAGGAAGAGTTTGAGCAGAAGCGACAGgtaagcacccacttgccagaattatctggtagtcacaatttctattttga #### Scd1_ID9002_5 --> 1 - 1 Original Alignment gTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTTCGTTAGCACCTTCTTGCGATACACTCTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCGCATCTCTATGGATATCGCCCCTACGACAAGAACATTCAATCCCGGGAGAATATC---CTGGTTTCCCTGGGTGCCGTGg gttcaattcatgcactgttgatccagacaacctttcatttgtccatacaggTACTACAGGCCCAGCCTCCTACTGATGTGCTTCATCCTGCCCACACTTGTACCTTGGTACTGCTGGGATGAAACTTTTGTAAACAGCCTATTTGTTAGTACTTTCTCTCGCTATACTTTGGTACTTAATGCTACGTGGCTGGTGAATAGTGCTGCACATCTATATGGATACCGTCCTTATGTCAAGAACATTGAATCTCAGGAGAATATTCTTCTTGTACCCCTAGGTGCTGTGggtgatttgccaaattatttattttgttccaacaatctgctttctcagatc Alignment from CESAR gTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTTCGTTAGCACCTTCTTGCGATACACTCTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCGCATCTCTATGGATATCGCCCCTACGACAAGAACATTCAATCCCGGGAGAATATCCTG---GTTTCCCTGGGTGCCGTGg gttcaattcatgcactgttgatccagacaacctttcatttgtccatacaggTACTACAGGCCCAGCCTCCTACTGATGTGCTTCATCCTGCCCACACTTGTACCTTGGTACTGCTGGGATGAAACTTTTGTAAACAGCCTATTTGTTAGTACTTTCTCTCGCTATACTTTGGTACTTAATGCTACGTGGCTGGTGAATAGTGCTGCACATCTATATGGATACCGTCCTTATGTCAAGAACATTGAATCTCAGGAGAATATTCTTCTTGTACCCCTAGGTGCTGTGggtgatttgccaaattatttattttgttccaacaatctgctttctcagatc Alignment from Spaln_aa2Genome GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTTCGTTAGCACCTTCTTGCGATACACTCTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCGCATCTCTATGGATATCGCCCCTACGACAAGAACATTCAATCCCGGGAGAATATC---CTGGTTTCCCTGGGTGCCGTGG gttcaattcatgcactgttgatccagacaacctttcatttgtccatacagGTACTACAGGCCCAGCCTCCTACTGATGTGCTTCATCCTGCCCACACTTGTACCTTGGTACTGCTGGGATGAAACTTTTGTAAACAGCCTATTTGTTAGTACTTTCTCTCGCTATACTTTGGTACTTAATGCTACGTGGCTGGTGAATAGTGCTGCACATCTATATGGATACCGTCCTTATGTCAAGAACATTGAATCTCAGGAGAATATTCTTCTTGTACCCCTAGGTGCTGTGGgtgatttgccaaattatttattttgttccaacaatctgctttctcagatc Alignment from Spaln_nt2Genome GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTTCGTTAGCACCTTCTTGCGATACACTCTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCGCATCTCTATGGATATCGCCCCTACGACAAGAACATTCAATCCCGGGAGAATATCCTGGTTT---CCCTGGGTGCCGTGG gttcaattcatgcactgttgatccagacaacctttcatttgtccatacagGTACTACAGGCCCAGCCTCCTACTGATGTGCTTCATCCTGCCCACACTTGTACCTTGGTACTGCTGGGATGAAACTTTTGTAAACAGCCTATTTGTTAGTACTTTCTCTCGCTATACTTTGGTACTTAATGCTACGTGGCTGGTGAATAGTGCTGCACATCTATATGGATACCGTCCTTATGTCAAGAACATTGAATCTCAGGAGAATATTCTTCTTGTACCCCTAGGTGCTGTGGgtgatttgccaaattatttattttgttccaacaatctgctttctcagatc Alignment from Pairagon GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTTCGTTAGCACCTTCTTGCGATACACTCTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCGCATCTCTATGGATATCGCCCCTACGACAAGAACATTCAATCCCGGGAGAATA---TCCTGGTTTCCCTGGGTGCCGTGG gttcaattcatgcactgttgatccagacaacctttcatttgtccatacagGTACTACAGGCCCAGCCTCCTACTGATGTGCTTCATCCTGCCCACACTTGTACCTTGGTACTGCTGGGATGAAACTTTTGTAAACAGCCTATTTGTTAGTACTTTCTCTCGCTATACTTTGGTACTTAATGCTACGTGGCTGGTGAATAGTGCTGCACATCTATATGGATACCGTCCTTATGTCAAGAACATTGAATCTCAGGAGAATATTCTTCTTGTACCCCTAGGTGCTGTGGgtgatttgccaaattatttattttgttccaacaatctgctttctcagatc Alignment from Exonerate_protein2genome GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTTCGTTAGCACCTTCTTGCGATACACTCTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCGCATCTCTATGGATATCGCCCCTACGACAAGAACATTCAATCCCGGGAGAATATC---CTGGTTTCCCTGGGTGCCGTGG gttcaattcatgcactgttgatccagacaacctttcatttgtccatacagGTACTACAGGCCCAGCCTCCTACTGATGTGCTTCATCCTGCCCACACTTGTACCTTGGTACTGCTGGGATGAAACTTTTGTAAACAGCCTATTTGTTAGTACTTTCTCTCGCTATACTTTGGTACTTAATGCTACGTGGCTGGTGAATAGTGCTGCACATCTATATGGATACCGTCCTTATGTCAAGAACATTGAATCTCAGGAGAATATTCTTCTTGTACCCCTAGGTGCTGTGGgtgatttgccaaattatttattttgttccaacaatctgctttctcagatc Alignment from Exonerate_coding2genome GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTTCGTTAGCACCTTCTTGCGATACACTCTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCGCATCTCTATGGATATCGCCCCTACGACAAGAACATTCAATCCCGGGAGAATATC---CTGGTTTCCCTGGGTGCCGTGG gttcaattcatgcactgttgatccagacaacctttcatttgtccatacagGTACTACAGGCCCAGCCTCCTACTGATGTGCTTCATCCTGCCCACACTTGTACCTTGGTACTGCTGGGATGAAACTTTTGTAAACAGCCTATTTGTTAGTACTTTCTCTCGCTATACTTTGGTACTTAATGCTACGTGGCTGGTGAATAGTGCTGCACATCTATATGGATACCGTCCTTATGTCAAGAACATTGAATCTCAGGAGAATATTCTTCTTGTACCCCTAGGTGCTGTGGgtgatttgccaaattatttattttgttccaacaatctgctttctcagatc Alignment from GeneWise GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTTCGTTAGCACCTTCTTGCGATACACTCTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCGCATCTCTATGGATATCGCCCCTACGACAAGAACATTCAATCCCGGGAGAATATCCTG---GTTTCCCTGGGTGCCGTGG gttcaattcatgcactgttgatccagacaacctttcatttgtccatacagGTACTACAGGCCCAGCCTCCTACTGATGTGCTTCATCCTGCCCACACTTGTACCTTGGTACTGCTGGGATGAAACTTTTGTAAACAGCCTATTTGTTAGTACTTTCTCTCGCTATACTTTGGTACTTAATGCTACGTGGCTGGTGAATAGTGCTGCACATCTATATGGATACCGTCCTTATGTCAAGAACATTGAATCTCAGGAGAATATTCTTCTTGTACCCCTAGGTGCTGTGGgtgatttgccaaattatttattttgttccaacaatctgctttctcagatc #### Scd1_ID9004_3 --> 2 - 0 Original Alignment ggATTTTCTACTACATGACCAGCGCTCTGGGCATCACAGCCGGGGCTCATCGCCTCTGGAGCCACAGAACTTACAAGGCACGGCTGCCCCTGCGGATCTTCCTTATCATTGCCAACACCATGGCGTTCCAG agatgtgcctgtctattgagtctcccccatctatggtcttttgcctacagggATCTTCTTCTACATGACTAGCGCTTTAGGCATAAAAGCTGAGACCCATCACCTCTGGAGCCACAGAACTTATAAAGCACAGTTGCCCTTACAGATTTTC---ATCATTTCAAACACCATGGCAATTCAGgtgagtacacttactggaggttgatgctaggatttgtatttgtcaccaag Alignment from CESAR ggATTTTCTACTACATGACCAGCGCTCTGGGCATCACAGCCGGGGCTCATCGCCTCTGGAGCCACAGAACTTACAAGGCACGGCTGCCCCTGCGGATCTTCCTTATCATTGCCAACACCATGGCGTTCCAG agatgtgcctgtctattgagtctcccccatctatggtcttttgcctacagggATCTTCTTCTACATGACTAGCGCTTTAGGCATAAAAGCTGAGACCCATCACCTCTGGAGCCACAGAACTTATAAAGCACAGTTGCCCTTACAGATTTTC---ATCATTTCAAACACCATGGCAATTCAGgtgagtacacttactggaggttgatgctaggatttgtatttgtcaccaag Alignment from Spaln_aa2Genome GGATTTTCTACTACATGACCAGCGCTCTGGGCATCACAGCCGGGGCTCATCGCCTCTGGAGCCACAGAACTTACAAGGCACGGCTGCCCCTGCGGATCTTCCTTATCATTGCCAACACCATGGCGTTCCAG agatgtgcctgtctattgagtctcccccatctatggtcttttgcctacagGGATCTTCTTCTACATGACTAGCGCTTTAGGCATAAAAGCTGAGACCCATCACCTCTGGAGCCACAGAACTTATAAAGCACAGTTGCCCTTACAGATTTTC---ATCATTTCAAACACCATGGCAATTCAGgtgagtacacttactggaggttgatgctaggatttgtatttgtcaccaag Alignment from Spaln_nt2Genome GGATTTTCTACTACATGACCAGCGCTCTGGGCATCACAGCCGGGGCTCATCGCCTCTGGAGCCACAGAACTTACAAGGCACGGCTGCCCCTGCGGATCTTCCTTATCATTGCCAACACCATGGCGTTCCAG agatgtgcctgtctattgagtctcccccatctatggtcttttgcctacagGGATCTTCTTCTACATGACTAGCGCTTTAGGCATAAAAGCTGAGACCCATCACCTCTGGAGCCACAGAACTTATAAAGCACAGTTGCCCTTACAGATTTTC---ATCATTTCAAACACCATGGCAATTCAGgtgagtacacttactggaggttgatgctaggatttgtatttgtcaccaag Alignment from Pairagon GGATTTTCTACTACATGACCAGCGCTCTGGGCATCACAGCCGGGGCTCATCGCCTCTGGAGCCACAGAACTTACAAGGCACGGCTGCCCCTGCGGATCTTCCTTATCATTGCCAACACCATGGCGTTCCAG agatgtgcctgtctattgagtctcccccatctatggtcttttgcctacagGGATCTTCTTCTACATGACTAGCGCTTTAGGCATAAAAGCTGAGACCCATCACCTCTGGAGCCACAGAACTTATAAAGCACAGTTGCCCTTACAGATTTTC---ATCATTTCAAACACCATGGCAATTCAGgtgagtacacttactggaggttgatgctaggatttgtatttgtcaccaag Alignment from Exonerate_protein2genome GGATTTTCTACTACATGACCAGCGCTCTGGGCATCACAGCCGGGGCTCATCGCCTCTGGAGCCACAGAACTTACAAGGCACGGCTGCCCCTGCGGATCTTCCTTATCATTGCCAACACCATGGCGTTCCAG agatgtgcctgtctattgagtctcccccatctatggtcttttgcctacagGGATCTTCTTCTACATGACTAGCGCTTTAGGCATAAAAGCTGAGACCCATCACCTCTGGAGCCACAGAACTTATAAAGCACAGTTGCCCTTACAGATTTTC---ATCATTTCAAACACCATGGCAATTCAGgtgagtacacttactggaggttgatgctaggatttgtatttgtcaccaag Alignment from Exonerate_coding2genome GGATTTTCTACTACATGACCAGCGCTCTGGGCATCACAGCCGGGGCTCATCGCCTCTGGAGCCACAGAACTTACAAGGCACGGCTGCCCCTGCGGATCTTCCTTATCATTGCCAACACCATGGCGTTCCAG agatgtgcctgtctattgagtctcccccatctatggtcttttgcctacagGGATCTTCTTCTACATGACTAGCGCTTTAGGCATAAAAGCTGAGACCCATCACCTCTGGAGCCACAGAACTTATAAAGCACAGTTGCCCTTACAGATTTTC---ATCATTTCAAACACCATGGCAATTCAGgtgagtacacttactggaggttgatgctaggatttgtatttgtcaccaag Alignment from GeneWise GGATTTTCTACTACATGACCAGCGCTCTGGGCATCACAGCCGGGGCTCATCGCCTCTGGAGCCACAGAACTTACAAGGCACGGCTGCCCCTGCGGATCTTCCTTATCATTGCCAACACCATGGCGTTCCAG agatgtgcctgtctattgagtctcccccatctatggtcttttgcctacagGGATCTTCTTCTACATGACTAGCGCTTTAGGCATAAAAGCTGAGACCCATCACCTCTGGAGCCACAGAACTTATAAAGCACAGTTGCCCTTACAGATTTTC---ATCATTTCAAACACCATGGCAATTCAGgtgagtacacttactggaggttgatgctaggatttgtatttgtcaccaag #### Scd2_ID8988_4 --> 0 - 2 Original Alignment AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGag gcttcccctttgtgactcctacccccataacgggtttgtctgccctgtagAATGATGTCTATGAATGGGCACGGGATCATTGTGACCACCACAAGTTCTCCGAAACACATGCTGACCCTCACAAA---CACCGGGGCTTCTTTTACTCTCACGTGGGTTGGCTGCTTGTCCGTAAACACCCAGCTGTCAAAGAAAAGGGTGGAAAGCTGGATATATCTGCCCTGAAAGCTGCAGAGCTAGTAATGTTTCAGAGGaggtgagttgacgtcaaagctgatgctatgaaaattaaaaggtactagggga Alignment from CESAR AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGag gcttcccctttgtgactcctacccccataacgggtttgtctgccctgtagAATGATGTCTATGAATGGGCACGGGATCATTGTGACCACCACAAGTTCTCCGAAACACATGCTGACCCTCACAAA---CACCGGGGCTTCTTTTACTCTCACGTGGGTTGGCTGCTTGTCCGTAAACACCCAGCTGTCAAAGAAAAGGGTGGAAAGCTGGATATATCTGCCCTGAAAGCTGCAGAGCTAGTAATGTTTCAGAGGaggtgagttgacgtcaaagctgatgctatgaaaattaaaaggtactagggga Alignment from Spaln_aa2Genome AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG gcttcccctttgtgactcctacccccataacgggtttgtctgccctgtagAATGATGTCTATGAATGGGCACGGGATCATTGTGACCACCACAAGTTCTCCGAAACACATGCTGACCCTCACAAA---CACCGGGGCTTCTTTTACTCTCACGTGGGTTGGCTGCTTGTCCGTAAACACCCAGCTGTCAAAGAAAAGGGTGGAAAGCTGGATATATCTGCCCTGAAAGCTGCAGAGCTAGTAATGTTTCAGAGGAGgtgagttgacgtcaaagctgatgctatgaaaattaaaaggtactagggga Alignment from Spaln_nt2Genome AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG gcttcccctttgtgactcctacccccataacgggtttgtctgccctgtagAATGATGTCTATGAATGGGCACGGGATCATTGTGACCACCACAAGTTCTCCGAAACACATGCTGACCCTCACAA---ACACCGGGGCTTCTTTTACTCTCACGTGGGTTGGCTGCTTGTCCGTAAACACCCAGCTGTCAAAGAAAAGGGTGGAAAGCTGGATATATCTGCCCTGAAAGCTGCAGAGCTAGTAATGTTTCAGAGGAGgtgagttgacgtcaaagctgatgctatgaaaattaaaaggtactagggga Alignment from Pairagon AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG gcttcccctttgtgactcctacccccataacgggtttgtctgccctgtagAATGATGTCTATGAATGGGCACGGGATCATTGTGACCACCACAAGTTCTCCGAAACACATGCTGACCCTCACAA---ACACCGGGGCTTCTTTTACTCTCACGTGGGTTGGCTGCTTGTCCGTAAACACCCAGCTGTCAAAGAAAAGGGTGGAAAGCTGGATATATCTGCCCTGAAAGCTGCAGAGCTAGTAATGTTTCAGAGGAGgtgagttgacgtcaaagctgatgctatgaaaattaaaaggtactagggga Alignment from Exonerate_protein2genome AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG gcttcccctttgtgactcctacccccataacgggtttgtctgccctgtagAATGATGTCTATGAATGGGCACGGGATCATTGTGACCACCACAAGTTCTCCGAAACACATGCTGACCCTCAC---AAACACCGGGGCTTCTTTTACTCTCACGTGGGTTGGCTGCTTGTCCGTAAACACCCAGCTGTCAAAGAAAAGGGTGGAAAGCTGGATATATCTGCCCTGAAAGCTGCAGAGCTAGTAATGTTTCAGAGGAGgtgagttgacgtcaaagctgatgctatgaaaattaaaaggtactagggga Alignment from Exonerate_coding2genome AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG gcttcccctttgtgactcctacccccataacgggtttgtctgccctgtagAATGATGTCTATGAATGGGCACGGGATCATTGTGACCACCACAAGTTCTCCGAAACACATGCTGACCCTCAC---AAACACCGGGGCTTCTTTTACTCTCACGTGGGTTGGCTGCTTGTCCGTAAACACCCAGCTGTCAAAGAAAAGGGTGGAAAGCTGGATATATCTGCCCTGAAAGCTGCAGAGCTAGTAATGTTTCAGAGGAGgtgagttgacgtcaaagctgatgctatgaaaattaaaaggtactagggga Alignment from GeneWise AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG gcttcccctttgtgactcctacccccataacgggtttgtctgccctgtagAATGATGTCTATGAATGGGCACGGGATCATTGTGACCACCACAAGTTCTCCGAAACACATGCTGACCCTCACAAA---CACCGGGGCTTCTTTTACTCTCACGTGGGTTGGCTGCTTGTCCGTAAACACCCAGCTGTCAAAGAAAAGGGTGGAAAGCTGGATATATCTGCCCTGAAAGCTGCAGAGCTAGTAATGTTTCAGAGGAGgtgagttgacgtcaaagctgatgctatgaaaattaaaaggtactagggga #### Sec31b_ID9034_18 --> 0 - 0 Original Alignment CCAGGAGTTCAGCAGCTGAGAGATCGGCTTTTTCATGCCCAAGGTTCTGCCGTCTTAGGCCAACAGGCTCCTGCTTTCCCTTTCCCCCGAGTTGCTGTAGGAGCTGCCCTCCACTCCAAAGAGACATCGTCATACAGAAGGGGGCTCCAGCCTCCTCAGCAG tccaccaacagtcaacttaactctctgtaaaaaatgtaaaaaacttttagCCAGGAGTTCTCCAACTGAGAGACCGGCTTTTTCATGCCCAAGGCTCTGCCATTTTAGGACAGCAGGCT------TTCCCTTTCCCTCGGGTTGCCGTTGGAGCCTCTCTCCACTCCAGAAAAACTTCATCATACAAAAGGGGTCTCCAGCGTCCTCAGCAAgtaagctcttccctattgagaatgtctttttcctgtctgtcttctatttt Alignment from CESAR CCAGGAGTTCAGCAGCTGAGAGATCGGCTTTTTCATGCCCAAGGTTCTGCCGTCTTAGGCCAACAGGCTCCTGCTTTCCCTTTCCCCCGAGTTGCTGTAGGAGCTGCCCTCCACTCCAAAGAGACATCGTCATACAGAAGGGGGCTCCAGCCTCCTCAGCAG tccaccaacagtcaacttaactctctgtaaaaaatgtaaaaaacttttagCCAGGAGTTCTCCAACTGAGAGACCGGCTTTTTCATGCCCAAGGCTCTGCCATTTTAGGACAGCAG------GCTTTCCCTTTCCCTCGGGTTGCCGTTGGAGCCTCTCTCCACTCCAGAAAAACTTCATCATACAAAAGGGGTCTCCAGCGTCCTCAGCAAgtaagctcttccctattgagaatgtctttttcctgtctgtcttctatttt Alignment from Spaln_aa2Genome CCAGGAGTTCAGCAGCTGAGAGATCGGCTTTTTCATGCCCAAGGTTCTGCCGTCTTAGGCCAACAGGCTCCTGCTTTCCCTTTCCCCCGAGTTGCTGTAGGAGCTGCCCTCCACTCCAAAGAGACATCGTCATACAGAAGGGGGCTCCAGCCTCCTCAGCAG tccaccaacagtcaacttaactctctgtaaaaaatgtaaaaaacttttagCCAGGAGTTCTCCAACTGAGAGACCGGCTTTTTCATGCCCAAGGCTCTGCCATTTTAGGACAGCAG------GCTTTCCCTTTCCCTCGGGTTGCCGTTGGAGCCTCTCTCCACTCCAGAAAAACTTCATCATACAAAAGGGGTCTCCAGCGTCCTCAGCAAgtaagctcttccctattgagaatgtctttttcctgtctgtcttctatttt Alignment from Spaln_nt2Genome CCAGGAGTTCAGCAGCTGAGAGATCGGCTTTTTCATGCCCAAGGTTCTGCCGTCTTAGGCCAACAGGCTCCTGCTTTCCCTTTCCCCCGAGTTGCTGTAGGAGCTGCCCTCCACTCCAAAGAGACATCGTCATACAGAAGGGGGCTCCAGCCTCCTCAGCAG tccaccaacagtcaacttaactctctgtaaaaaatgtaaaaaacttttagCCAGGAGTTCTCCAACTGAGAGACCGGCTTTTTCATGCCCAAGGCTCTGCCATTTTAGGACAGCAGGCT------TTCCCTTTCCCTCGGGTTGCCGTTGGAGCCTCTCTCCACTCCAGAAAAACTTCATCATACAAAAGGGGTCTCCAGCGTCCTCAGCAAgtaagctcttccctattgagaatgtctttttcctgtctgtcttctatttt Alignment from Pairagon CCAGGAGTTCAGCAGCTGAGAGATCGGCTTTTTCATGCCCAAGGTTCTGCCGTCTTAGGCCAACAGGCTCCTGCTTTCCCTTTCCCCCGAGTTGCTGTAGGAGCTGCCCTCCACTCCAAAGAGACATCGTCATACAGAAGGGGGCTCCAGCCTCCTCAGCAG tccaccaacagtcaacttaactctctgtaaaaaatgtaaaaaacttttagCCAGGAGTTCTCCAACTGAGAGACCGGCTTTTTCATGCCCAAGGCTCTGCCATTTTAGGACAGCAG------GCTTTCCCTTTCCCTCGGGTTGCCGTTGGAGCCTCTCTCCACTCCAGAAAAACTTCATCATACAAAAGGGGTCTCCAGCGTCCTCAGCAAgtaagctcttccctattgagaatgtctttttcctgtctgtcttctatttt Alignment from Exonerate_protein2genome CCAGGAGTTCAGCAGCTGAGAGATCGGCTTTTTCATGCCCAAGGTTCTGCCGTCTTAGGCCAACAGGCTCCTGCTTTCCCTTTCCCCCGAGTTGCTGTAGGAGCTGCCCTCCACTCCAAAGAGACATCGTCATACAGAAGGGGGCTCCAGCCTCCTCAGCAG tccaccaacagtcaacttaactctctgtaaaaaatgtaaaaaacttttagCCAGGAGTTCTCCAACTGAGAGACCGGCTTTTTCATGCCCAAGGCTCTGCCATTTTAGGACAGCAG------GCTTTCCCTTTCCCTCGGGTTGCCGTTGGAGCCTCTCTCCACTCCAGAAAAACTTCATCATACAAAAGGGGTCTCCAGCGTCCTCAGCAAgtaagctcttccctattgagaatgtctttttcctgtctgtcttctatttt Alignment from Exonerate_coding2genome CCAGGAGTTCAGCAGCTGAGAGATCGGCTTTTTCATGCCCAAGGTTCTGCCGTCTTAGGCCAACAGGCTCCTGCTTTCCCTTTCCCCCGAGTTGCTGTAGGAGCTGCCCTCCACTCCAAAGAGACATCGTCATACAGAAGGGGGCTCCAGCCTCCTCAGCAG tccaccaacagtcaacttaactctctgtaaaaaatgtaaaaaacttttagCCAGGAGTTCTCCAACTGAGAGACCGGCTTTTTCATGCCCAAGGCTCTGCCATTTTAGGACAGCAG------GCTTTCCCTTTCCCTCGGGTTGCCGTTGGAGCCTCTCTCCACTCCAGAAAAACTTCATCATACAAAAGGGGTCTCCAGCGTCCTCAGCAAgtaagctcttccctattgagaatgtctttttcctgtctgtcttctatttt Alignment from GeneWise CCAGGAGTTCAGCAGCTGAGAGATCGGCTTTTTCATGCCCAAGGTTCTGCCGTCTTAGGCCAACAGGCTCCTGCTTTCCCTTTCCCCCGAGTTGCTGTAGGAGCTGCCCTCCACTCCAAAGAGACATCGTCATACAGAAGGGGGCTCCAGCCTCCTCAGCAG tccaccaacagtcaacttaactctctgtaaaaaatgtaaaaaacttttagCCAGGAGTTCTCCAACTGAGAGACCGGCTTTTTCATGCCCAAGGCTCTGCCATTTTAGGACAGCAG------GCTTTCCCTTTCCCTCGGGTTGCCGTTGGAGCCTCTCTCCACTCCAGAAAAACTTCATCATACAAAAGGGGTCTCCAGCGTCCTCAGCAAgtaagctcttccctattgagaatgtctttttcctgtctgtcttctatttt #### Sec31b_ID9041_11 --> 0 - 0 Original Alignment GTGACCTTAGAGCAGGATTCCAGGCCGAAGTTCCTTGGGCTGTTAGGTTACAGCAGAGAGGAACTTCAGAAGAAG ccattgttatttgatgaattgtaatctgacttctctgattttgcctttagGTGACCTTAGAGCAGGATTCCAGGCCAAAATTCTTTGGGCTGTTGGGTTGCAGTCGAAAGGAAATTCAGAAGAAGgtaagtgtacacccacaggacacaaaatcactatccccaagaaccccaca Alignment from CESAR GTGACCTTAGAGCAGGATTCCAGGCCGAAGTTCCTTGGGCTGTTAGGTTACAGCAGAGAGGAACTTCAGAAGAAG ccattgttatttgatgaattgtaatctgacttctctgattttgcctttagGTGACCTTAGAGCAGGATTCCAGGCCAAAATTCTTTGGGCTGTTGGGTTGCAGTCGAAAGGAAATTCAGAAGAAGgtaagtgtacacccacaggacacaaaatcactatccccaagaaccccaca Alignment from Spaln_aa2Genome GTGACCTTAGAGCAGGATTCCAGGCCGAAGTTCCTTGGGCTGTTAGGTTACAGCAGAGAGGAACTTCAGAAGAAG ccattgttatttgatgaattgtaatctgacttctctgattttgcctttagGTGACCTTAGAGCAGGATTCCAGGCCAAAATTCTTTGGGCTGTTGGGTTGCAGTCGAAAGGAAATTCAGAAGAAGgtaagtgtacacccacaggacacaaaatcactatccccaagaaccccaca Alignment from Spaln_nt2Genome GTGACCTTAGAGCAGGATTCCAGGCCGAAGTTCCTTGGGCTGTTAGGTTACAGCAGAGAGGAACTTCAGAAGAAG ccattgttatttgatgaattgtaatctgacttctctgattttgcctttagGTGACCTTAGAGCAGGATTCCAGGCCAAAATTCTTTGGGCTGTTGGGTTGCAGTCGAAAGGAAATTCAGAAGAAGgtaagtgtacacccacaggacacaaaatcactatccccaagaaccccaca Alignment from Pairagon GTGACCTTAGAGCAGGATTCCAGGCCGAAGTTCCTTGGGCTGTTAGGTTACAGCAGAGAGGAACTTCAGAAGAAG ccattgttatttgatgaattgtaatctgacttctctgattttgcctttagGTGACCTTAGAGCAGGATTCCAGGCCAAAATTCTTTGGGCTGTTGGGTTGCAGTCGAAAGGAAATTCAGAAGAAGgtaagtgtacacccacaggacacaaaatcactatccccaagaaccccaca Alignment from Exonerate_protein2genome GTGACCTTAGAGCAGGATTCCAGGCCGAAGTTCCTTGGGCTGTTAGGTTACAGCAGAGAGGAACTTCAGAAGAAG ccattgttatttgatgaattgtaatctgacttctctgattttgcctttagGTGACCTTAGAGCAGGATTCCAGGCCAAAATTCTTTGGGCTGTTGGGTTGCAGTCGAAAGGAAATTCAGAAGAAGgtaagtgtacacccacaggacacaaaatcactatccccaagaaccccaca Alignment from Exonerate_coding2genome GTGACCTTAGAGCAGGATTCCAGGCCGAAGTTCCTTGGGCTGTTAGGTTACAGCAGAGAGGAACTTCAGAAGAAG ccattgttatttgatgaattgtaatctgacttctctgattttgcctttagGTGACCTTAGAGCAGGATTCCAGGCCAAAATTCTTTGGGCTGTTGGGTTGCAGTCGAAAGGAAATTCAGAAGAAGgtaagtgtacacccacaggacacaaaatcactatccccaagaaccccaca Alignment from GeneWise GTGACCTTAGAGCAGGATTCCAGGCCGAAGTTCCTTGGGCTGTTAGGTTACAGCAGAGAGGAACTTCAGAAGAAGGTGG ccattgttatttgatgaattgtaatctgacttctctgattttgcctttagGTGACCTTAGAGCAGGATTCCAGGCCAAAATTCTTTGGGCTGTTGGGTTGCAGTCGAAAGGAAATTCAGAAGAAGGTAAgtgtacacccacaggacacaaaatcactatccccaagaaccccaca #### Sf1_ID1658_3 --> 2 - 2 Original Alignment tgCAACTACAGATAGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACag cacccctcttaaagtccccaattgctcgttatctttgtttaccttcccagtgCAACTACAGATAGAAGACCTTACCCGTAAACTGCGCACAGGAGATCTGGACATACCCCCCAACCCTGAGGACaggtacacaaacaattttcatcaaatgaccgtaacccttagatttattgtat Alignment from CESAR tgCAACTACAGATAGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACag cacccctcttaaagtccccaattgctcgttatctttgtttaccttcccagtgCAACTACAGATAGAAGACCTTACCCGTAAACTGCGCACAGGAGATCTGGACATACCCCCCAACCCTGAGGACaggtacacaaacaattttcatcaaatgaccgtaacccttagatttattgtat Alignment from Spaln_aa2Genome TGCAACTACAGATAGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACAG cacccctcttaaagtccccaattgctcgttatctttgtttaccttcccagTGCAACTACAGATAGAAGACCTTACCCGTAAACTGCGCACAGGAGATCTGGACATACCCCCCAACCCTGAGGACAGgtacacaaacaattttcatcaaatgaccgtaacccttagatttattgtat Alignment from Spaln_nt2Genome TGCAACTACAGATAGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACAG cacccctcttaaagtccccaattgctcgttatctttgtttaccttcccagTGCAACTACAGATAGAAGACCTTACCCGTAAACTGCGCACAGGAGATCTGGACATACCCCCCAACCCTGAGGACAGgtacacaaacaattttcatcaaatgaccgtaacccttagatttattgtat Alignment from Pairagon TGCAACTACAGATAGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACAG cacccctcttaaagtccccaattgctcgttatctttgtttaccttcccagTGCAACTACAGATAGAAGACCTTACCCGTAAACTGCGCACAGGAGATCTGGACATACCCCCCAACCCTGAGGACAGgtacacaaacaattttcatcaaatgaccgtaacccttagatttattgtat Alignment from Exonerate_protein2genome TGCAACTACAGATAGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACAG cacccctcttaaagtccccaattgctcgttatctttgtttaccttcccagTGCAACTACAGATAGAAGACCTTACCCGTAAACTGCGCACAGGAGATCTGGACATACCCCCCAACCCTGAGGACAGgtacacaaacaattttcatcaaatgaccgtaacccttagatttattgtat Alignment from Exonerate_coding2genome TGCAACTACAGATAGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACAG cacccctcttaaagtccccaattgctcgttatctttgtttaccttcccagTGCAACTACAGATAGAAGACCTTACCCGTAAACTGCGCACAGGAGATCTGGACATACCCCCCAACCCTGAGGACAGgtacacaaacaattttcatcaaatgaccgtaacccttagatttattgtat Alignment from GeneWise TGCAACTACAGATAGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACAG cacccctcttaaagtccccaattgctcgttatctttgtttaccttcccagTGCAACTACAGATAGAAGACCTTACCCGTAAACTGCGCACAGGAGATCTGGACATACCCCCCAACCCTGAGGACAGgtacacaaacaattttcatcaaatgaccgtaacccttagatttattgtat #### Sf1_ID1666_7 --> 0 - 2 Original Alignment ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATag agccaaactgccaagttttttgatgaggcttcctcctgtgtcccacccagATCCGAAATATGCTAAAGCAAGGTATTGAAACCCCAGAAGGCCAGAATGATCTACACAAGATGCAGCTTCGAGAGCTGGCTCACCTAAATGGCACTCTACGGGAGGAA---GCCcggtaagtggaatgttgaagaaactgcataggcaggtttaagttttactgaa Alignment from CESAR ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATag agccaaactgccaagttttttgatgaggcttcctcctgtgtcccacccagATCCGAAATATGCTAAAGCAAGGTATTGAAACCCCAGAAGGCCAGAATGATCTACACAAGATGCAGCTTCGAGAGCTGGCTCACCTAAATGGCACTCTACGGGAG---GAAGCCcggtaagtggaatgttgaagaaactgcataggcaggtttaagttttactgaa Alignment from Spaln_aa2Genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATAG agccaaactgccaagttttttgatgaggcttcctcctgtgtcccacccagATCCGAAATATGCTAAAGCAAGGTATTGAAACCCCAGAAGGCCAGAATGATCTACACAAGATGCAGCTTCGAGAGCTGGCTCACCTAAATGGCACTCTACGGGAG---GAAGCCCGgtaagtggaatgttgaagaaactgcataggcaggtttaagttttactgaa Alignment from Spaln_nt2Genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATAG agccaaactgccaagttttttgatgaggcttcctcctgtgtcccacccagATCCGAAATATGCTAAAGCAAGGTATTGAAACCCCAGAAGGCCAGAATGATCTACACAAGATGCAGCTTCGAGAGCTGGCTCACCTAAATGGCACTCTACGGGAGGAAG---CCCGgtaagtggaatgttgaagaaactgcataggcaggtttaagttttactgaa Alignment from Pairagon ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGA------ agccaaactgccaagttttttgatgaggcttcctcctgtgtcccacccagATCCGAAATATGCTAAAGCAAGGTATTGAAACCCCAGAAGGCCAGAATGATCTACACAAGATGCAGCTTCGAGAGCTGGCTCACCTAAATGGCACTCTACGGGAGGAAGCCCGgtaagtggaatgttgaagaaactgcataggcaggtttaagttttactgaa Alignment from Exonerate_protein2genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATAG agccaaactgccaagttttttgatgaggcttcctcctgtgtcccacccagATCCGAAATATGCTAAAGCAAGGTATTGAAACCCCAGAAGGCCAGAATGATCTACACAAGATGCAGCTTCGAGAGCTGGCTCACCTAAATGGCACTCTACGGGAG---GAAGCCCGgtaagtggaatgttgaagaaactgcataggcaggtttaagttttactgaa Alignment from Exonerate_coding2genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATAG agccaaactgccaagttttttgatgaggcttcctcctgtgtcccacccagATCCGAAATATGCTAAAGCAAGGTATTGAAACCCCAGAAGGCCAGAATGATCTACACAAGATGCAGCTTCGAGAGCTGGCTCACCTAAATGGCACTCTACGGGAG---GAAGCCCGgtaagtggaatgttgaagaaactgcataggcaggtttaagttttactgaa Alignment from GeneWise ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAA agccaaactgccaagttttttgatgaggcttcctcctgtgtcccacccagATCCGAAATATGCTAAAGCAAGGTATTGAAACCCCAGAAGGCCAGAATGATCTACACAAGATGCAGCTTCGAGAGCTGGCTCACCTAAATGGCACTCTACGGGAGGAAGCCCGgtaagtggaatgttgaagaaactgcataggcaggtttaagttttactgaa #### Sf1_ID1669_10 --> 0 - 1 Original Alignment TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg ggggtcagacttgtctctgctaaaacagtatctttgttttccccatacagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTCACAGGTGGGCATGGTGGACACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGggtataaaagatgaccaagaacatatagggcttgaacaaatggcggacacc Alignment from CESAR TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg ggggtcagacttgtctctgctaaaacagtatctttgttttccccatacagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTCACAGGTGGGCATGGTGGACACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGggtataaaagatgaccaagaacatatagggcttgaacaaatggcggacacc Alignment from Spaln_aa2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ggggtcagacttgtctctgctaaaacagtatctttgttttccccatacagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTCACAGGTGGGCATGGTGGACACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtataaaagatgaccaagaacatatagggcttgaacaaatggcggacacc Alignment from Spaln_nt2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ggggtcagacttgtctctgctaaaacagtatctttgttttccccatacagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTCACAGGTGGGCATGGTGGACACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtataaaagatgaccaagaacatatagggcttgaacaaatggcggacacc Alignment from Pairagon TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ggggtcagacttgtctctgctaaaacagtatctttgttttccccatacagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTCACAGGTGGGCATGGTGGACACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtataaaagatgaccaagaacatatagggcttgaacaaatggcggacacc Alignment from Exonerate_protein2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ggggtcagacttgtctctgctaaaacagtatctttgttttccccatacagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTCACAGGTGGGCATGGTGGACACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtataaaagatgaccaagaacatatagggcttgaacaaatggcggacacc Alignment from Exonerate_coding2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ggggtcagacttgtctctgctaaaacagtatctttgttttccccatacagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTCACAGGTGGGCATGGTGGACACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtataaaagatgaccaagaacatatagggcttgaacaaatggcggacacc Alignment from GeneWise TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ggggtcagacttgtctctgctaaaacagtatctttgttttccccatacagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTCACAGGTGGGCATGGTGGACACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtataaaagatgaccaagaacatatagggcttgaacaaatggcggacacc #### Sf3b2_ID898_20 --> 0 - 0 Original Alignment GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG tgggattgggccctgatctgtaggaccttactttcttgtttcatttccagGTTATGAGCCAAAAGGGTGCTGCCCCTGAGTTACAAGGTGTGGAAGTGGCATTGGCACCTGAAGAATTAGACTTGGATTCTATGGCTACAATGCAGAAGTATGAAGAACATGTTCAGGAAAAACAGGCCAAAGTAGAGAAGGGAGATTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAGgtgagtatgattggcgtattcggcatgggggctattctctctagtgggaa Alignment from CESAR GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG tgggattgggccctgatctgtaggaccttactttcttgtttcatttccagGTTATGAGCCAAAAGGGTGCTGCCCCTGAGTTACAAGGTGTGGAAGTGGCATTGGCACCTGAAGAATTAGACTTGGATTCTATGGCTACAATGCAGAAGTATGAAGAACATGTTCAGGAAAAACAGGCCAAAGTAGAGAAGGGAGATTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAGgtgagtatgattggcgtattcggcatgggggctattctctctagtgggaa Alignment from Spaln_aa2Genome GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG tgggattgggccctgatctgtaggaccttactttcttgtttcatttccagGTTATGAGCCAAAAGGGTGCTGCCCCTGAGTTACAAGGTGTGGAAGTGGCATTGGCACCTGAAGAATTAGACTTGGATTCTATGGCTACAATGCAGAAGTATGAAGAACATGTTCAGGAAAAACAGGCCAAAGTAGAGAAGGGAGATTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAGgtgagtatgattggcgtattcggcatgggggctattctctctagtgggaa Alignment from Spaln_nt2Genome GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGACATG---GTGGCTGAGCATGCTGCTAAGCAGAAG tgggattgggccctgatctgtaggaccttactttcttgtttcatttccagGTTATGAGCCAAAAGGGTGCTGCCCCTGAGTTACAAGGTGTGGAAGTGGCATTGGCACCTGAAGAATTAGACTTGGATTCTATGGCTACAATGCAGAAGTATGAAGAACATGTTCAGGAAAAACAGGCCAAAGTAGAGAAGGGAGATTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAGgtgagtatgattggcgtattcggcatgggggctattctctctagtgggaa Alignment from Pairagon GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG tgggattgggccctgatctgtaggaccttactttcttgtttcatttccagGTTATGAGCCAAAAGGGTGCTGCCCCTGAGTTACAAGGTGTGGAAGTGGCATTGGCACCTGAAGAATTAGACTTGGATTCTATGGCTACAATGCAGAAGTATGAAGAACATGTTCAGGAAAAACAGGCCAAAGTAGAGAAGGGAGATTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAGgtgagtatgattggcgtattcggcatgggggctattctctctagtgggaa Alignment from Exonerate_protein2genome GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG tgggattgggccctgatctgtaggaccttactttcttgtttcatttccagGTTATGAGCCAAAAGGGTGCTGCCCCTGAGTTACAAGGTGTGGAAGTGGCATTGGCACCTGAAGAATTAGACTTGGATTCTATGGCTACAATGCAGAAGTATGAAGAACATGTTCAGGAAAAACAGGCCAAAGTAGAGAAGGGAGATTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAGgtgagtatgattggcgtattcggcatgggggctattctctctagtgggaa Alignment from Exonerate_coding2genome GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG tgggattgggccctgatctgtaggaccttactttcttgtttcatttccagGTTATGAGCCAAAAGGGTGCTGCCCCTGAGTTACAAGGTGTGGAAGTGGCATTGGCACCTGAAGAATTAGACTTGGATTCTATGGCTACAATGCAGAAGTATGAAGAACATGTTCAGGAAAAACAGGCCAAAGTAGAGAAGGGAGATTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAGgtgagtatgattggcgtattcggcatgggggctattctctctagtgggaa Alignment from GeneWise GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGACATG---GTGGCTGAGCATGCTGCTAAGCAGAAG tgggattgggccctgatctgtaggaccttactttcttgtttcatttccagGTTATGAGCCAAAAGGGTGCTGCCCCTGAGTTACAAGGTGTGGAAGTGGCATTGGCACCTGAAGAATTAGACTTGGATTCTATGGCTACAATGCAGAAGTATGAAGAACATGTTCAGGAAAAACAGGCCAAAGTAGAGAAGGGAGATTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAGgtgagtatgattggcgtattcggcatgggggctattctctctagtgggaa #### Sf3b2_ID899_19 --> 1 - 0 Original Alignment aAGTGAGACACCTCAGTTATTCACTGTATTGCCAGAGAAGAGAACAGCCACTGTTGGGGGAGCCATGATGGGATCCACCCACATTTATGACATGTCCACG tgagataccaagttgccccatctggggtttctctactgctctgttttcaggAGTGAAACACCACAGTTATTCACTGTATTGCCAGAGAAGAGAACTGCAACTGTTGGTGGG------ATGGGATCCACTCACATATATGACATGTCCACTgtaagtaacggaaaaacacatactcagactgggattgggccctgatctgt Alignment from CESAR aAGTGAGACACCTCAGTTATTCACTGTATTGCCAGAGAAGAGAACAGCCACTGTTGGGGGAGCCATGATGGGATCCACCCACATTTATGACATGTCCACG tgagataccaagttgccccatctggggtttctctactgctctgttttcaggAGTGAAACACCACAGTTATTCACTGTATTGCCAGAGAAGAGAACTGCAACTGTTGGTGGG------ATGGGATCCACTCACATATATGACATGTCCACTgtaagtaacggaaaaacacatactcagactgggattgggccctgatctgt Alignment from Spaln_aa2Genome AAGTGAGACACCTCAGTTATTCACTGTATTGCCAGAGAAGAGAACAGCCACTGTTGGGGGAGCCATGATGGGATCCACCCACATTTATGACATGTCCACG tgagataccaagttgccccatctggggtttctctactgctctgttttcagGAGTGAAACACCACAGTTATTCACTGTATTGCCAGAGAAGAGAACTGCAACTGTTGGTGGG------ATGGGATCCACTCACATATATGACATGTCCACTgtaagtaacggaaaaacacatactcagactgggattgggccctgatctgt Alignment from Spaln_nt2Genome AAGTGAGACACCTCAGTTATTCACTGTATTGCCAGAGAAGAGAACAGCCACTGTTGGGGGAGCCATGATGGGATCCACCCACATTTATGACATGTCCACG tgagataccaagttgccccatctggggtttctctactgctctgttttcagGAGTGAAACACCACAGTTATTCACTGTATTGCCAGAGAAGAGAACTGCAACTGTTGGTGG------GATGGGATCCACTCACATATATGACATGTCCACTgtaagtaacggaaaaacacatactcagactgggattgggccctgatctgt Alignment from Pairagon AAGTGAGACACCTCAGTTATTCACTGTATTGCCAGAGAAGAGAACAGCCACTGTTGGGGGAGCCATGATGGGATCCACCCACATTTATGACATGTCCACG tgagataccaagttgccccatctggggtttctctactgctctgttttcagGAGTGAAACACCACAGTTATTCACTGTATTGCCAGAGAAGAGAACTGCAACTGTTGGTGG------GATGGGATCCACTCACATATATGACATGTCCACTgtaagtaacggaaaaacacatactcagactgggattgggccctgatctgt Alignment from Exonerate_protein2genome AAGTGAGACACCTCAGTTATTCACTGTATTGCCAGAGAAGAGAACAGCCACTGTTGGGGGAGCCATGATGGGATCCACCCACATTTATGACATGTCCACG tgagataccaagttgccccatctggggtttctctactgctctgttttcagGAGTGAAACACCACAGTTATTCACTGTATTGCCAGAGAAGAGAACTGCAACTGTTGGTGGG------ATGGGATCCACTCACATATATGACATGTCCACTgtaagtaacggaaaaacacatactcagactgggattgggccctgatctgt Alignment from Exonerate_coding2genome AAGTGAGACACCTCAGTTATTCACTGTATTGCCAGAGAAGAGAACAGCCACTGTTGGGGGAGCCATGATGGGATCCACCCACATTTATGACATGTCCACG tgagataccaagttgccccatctggggtttctctactgctctgttttcagGAGTGAAACACCACAGTTATTCACTGTATTGCCAGAGAAGAGAACTGCAACTGTTGGTGGG------ATGGGATCCACTCACATATATGACATGTCCACTgtaagtaacggaaaaacacatactcagactgggattgggccctgatctgt Alignment from GeneWise AAGTGAGACACCTCAGTTATTCACTGTATTGCCAGAGAAGAGAACAGCCACTGTTGGGGGAGCCATGATGGGATCCACCCACATTTATGACATGTCCACG tgagataccaagttgccccatctggggtttctctactgctctgttttcagGAGTGAAACACCACAGTTATTCACTGTATTGCCAGAGAAGAGAACTGCAACTGTTGGTGGG------ATGGGATCCACTCACATATATGACATGTCCACTgtaagtaacggaaaaacacatactcagactgggattgggccctgatctgt #### Sf3b2_ID904_14 --> 0 - 0 Original Alignment GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT gttcgcccctagaaatcctgatgaaggagatgtgaagtttttctctccagGGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTTATCAGATGAGCTAAGGATCTTCTTAGGAATGCCAGTAGGACCTgtaagggcaggattaaattcagcatataaacagaaccaacggcagaaacc Alignment from CESAR GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT gttcgcccctagaaatcctgatgaaggagatgtgaagtttttctctccagGGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTTATCAGATGAGCTAAGGATCTTCTTAGGAATGCCAGTAGGACCTgtaagggcaggattaaattcagcatataaacagaaccaacggcagaaacc Alignment from Spaln_aa2Genome GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT gttcgcccctagaaatcctgatgaaggagatgtgaagtttttctctccagGGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTTATCAGATGAGCTAAGGATCTTCTTAGGAATGCCAGTAGGACCTgtaagggcaggattaaattcagcatataaacagaaccaacggcagaaacc Alignment from Spaln_nt2Genome GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT gttcgcccctagaaatcctgatgaaggagatgtgaagtttttctctccagGGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTTATCAGATGAGCTAAGGATCTTCTTAGGAATGCCAGTAGGACCTgtaagggcaggattaaattcagcatataaacagaaccaacggcagaaacc Alignment from Pairagon GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT gttcgcccctagaaatcctgatgaaggagatgtgaagtttttctctccagGGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTTATCAGATGAGCTAAGGATCTTCTTAGGAATGCCAGTAGGACCTgtaagggcaggattaaattcagcatataaacagaaccaacggcagaaacc Alignment from Exonerate_protein2genome GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT gttcgcccctagaaatcctgatgaaggagatgtgaagtttttctctccagGGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTTATCAGATGAGCTAAGGATCTTCTTAGGAATGCCAGTAGGACCTgtaagggcaggattaaattcagcatataaacagaaccaacggcagaaacc Alignment from Exonerate_coding2genome GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT gttcgcccctagaaatcctgatgaaggagatgtgaagtttttctctccagGGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTTATCAGATGAGCTAAGGATCTTCTTAGGAATGCCAGTAGGACCTgtaagggcaggattaaattcagcatataaacagaaccaacggcagaaacc Alignment from GeneWise GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT gttcgcccctagaaatcctgatgaaggagatgtgaagtttttctctccagGGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTTATCAGATGAGCTAAGGATCTTCTTAGGAATGCCAGTAGGACCTgtaagggcaggattaaattcagcatataaacagaaccaacggcagaaacc #### Sf3b2_ID906_12 --> 0 - 0 Original Alignment CTGGTGGCCCGGCCTGATGTTGTGGAGATGCATGACGTGACGGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCCGTCCCTGTGCCACGCCACTGGTGTTTTAAGCGCAAGTACCTTCAAGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGCATTCAGGAAATGAGAGAGGCCCTGCAGGAGAAG actttatcattactcatcacttctatttttcatctccaccctctctccagCTAGTGGCCCGGCCTGATGTTGTGGAGATGCATGATGTGACTGCACAGGACCCCAAGGTCTTGGTCCACCTCAAGGCCACCCGGAACTCTGTCCCTGTACCACGCCACTGGTGTTTTAAGCGTAAGTACCTTCATGGCAAAAGGGGCATTGAGAAGCCCCCTTTTGAGCTGCCAGATTTCATCAAACGCACAGGTATTCAGGAAATGAGAGAAGCCCTACAAGAGAAGgttagaaagattggaaggtgacgaaggaatagtgcacttcctctttcaag Alignment from CESAR CTGGTGGCCCGGCCTGATGTTGTGGAGATGCATGACGTGACGGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCCGTCCCTGTGCCACGCCACTGGTGTTTTAAGCGCAAGTACCTTCAAGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGCATTCAGGAAATGAGAGAGGCCCTGCAGGAGAAG actttatcattactcatcacttctatttttcatctccaccctctctccagCTAGTGGCCCGGCCTGATGTTGTGGAGATGCATGATGTGACTGCACAGGACCCCAAGGTCTTGGTCCACCTCAAGGCCACCCGGAACTCTGTCCCTGTACCACGCCACTGGTGTTTTAAGCGTAAGTACCTTCATGGCAAAAGGGGCATTGAGAAGCCCCCTTTTGAGCTGCCAGATTTCATCAAACGCACAGGTATTCAGGAAATGAGAGAAGCCCTACAAGAGAAGgttagaaagattggaaggtgacgaaggaatagtgcacttcctctttcaag Alignment from Spaln_aa2Genome CTGGTGGCCCGGCCTGATGTTGTGGAGATGCATGACGTGACGGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCCGTCCCTGTGCCACGCCACTGGTGTTTTAAGCGCAAGTACCTTCAAGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGCATTCAGGAAATGAGAGAGGCCCTGCAGGAGAAG actttatcattactcatcacttctatttttcatctccaccctctctccagCTAGTGGCCCGGCCTGATGTTGTGGAGATGCATGATGTGACTGCACAGGACCCCAAGGTCTTGGTCCACCTCAAGGCCACCCGGAACTCTGTCCCTGTACCACGCCACTGGTGTTTTAAGCGTAAGTACCTTCATGGCAAAAGGGGCATTGAGAAGCCCCCTTTTGAGCTGCCAGATTTCATCAAACGCACAGGTATTCAGGAAATGAGAGAAGCCCTACAAGAGAAGgttagaaagattggaaggtgacgaaggaatagtgcacttcctctttcaag Alignment from Spaln_nt2Genome CTGGTGGCCCGGCCTGATGTTGTGGAGATGCATGACGTGACGGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCCGTCCCTGTGCCACGCCACTGGTGTTTTAAGCGCAAGTACCTTCAAGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGCATTCAGGAAATGAGAGAGGCCCTGCAGGAGAAG actttatcattactcatcacttctatttttcatctccaccctctctccagCTAGTGGCCCGGCCTGATGTTGTGGAGATGCATGATGTGACTGCACAGGACCCCAAGGTCTTGGTCCACCTCAAGGCCACCCGGAACTCTGTCCCTGTACCACGCCACTGGTGTTTTAAGCGTAAGTACCTTCATGGCAAAAGGGGCATTGAGAAGCCCCCTTTTGAGCTGCCAGATTTCATCAAACGCACAGGTATTCAGGAAATGAGAGAAGCCCTACAAGAGAAGgttagaaagattggaaggtgacgaaggaatagtgcacttcctctttcaag Alignment from Pairagon CTGGTGGCCCGGCCTGATGTTGTGGAGATGCATGACGTGACGGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCCGTCCCTGTGCCACGCCACTGGTGTTTTAAGCGCAAGTACCTTCAAGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGCATTCAGGAAATGAGAGAGGCCCTGCAGGAGAAG actttatcattactcatcacttctatttttcatctccaccctctctccagCTAGTGGCCCGGCCTGATGTTGTGGAGATGCATGATGTGACTGCACAGGACCCCAAGGTCTTGGTCCACCTCAAGGCCACCCGGAACTCTGTCCCTGTACCACGCCACTGGTGTTTTAAGCGTAAGTACCTTCATGGCAAAAGGGGCATTGAGAAGCCCCCTTTTGAGCTGCCAGATTTCATCAAACGCACAGGTATTCAGGAAATGAGAGAAGCCCTACAAGAGAAGgttagaaagattggaaggtgacgaaggaatagtgcacttcctctttcaag Alignment from Exonerate_protein2genome CTGGTGGCCCGGCCTGATGTTGTGGAGATGCATGACGTGACGGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCCGTCCCTGTGCCACGCCACTGGTGTTTTAAGCGCAAGTACCTTCAAGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGCATTCAGGAAATGAGAGAGGCCCTGCAGGAGAAG actttatcattactcatcacttctatttttcatctccaccctctctccagCTAGTGGCCCGGCCTGATGTTGTGGAGATGCATGATGTGACTGCACAGGACCCCAAGGTCTTGGTCCACCTCAAGGCCACCCGGAACTCTGTCCCTGTACCACGCCACTGGTGTTTTAAGCGTAAGTACCTTCATGGCAAAAGGGGCATTGAGAAGCCCCCTTTTGAGCTGCCAGATTTCATCAAACGCACAGGTATTCAGGAAATGAGAGAAGCCCTACAAGAGAAGgttagaaagattggaaggtgacgaaggaatagtgcacttcctctttcaag Alignment from Exonerate_coding2genome CTGGTGGCCCGGCCTGATGTTGTGGAGATGCATGACGTGACGGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCCGTCCCTGTGCCACGCCACTGGTGTTTTAAGCGCAAGTACCTTCAAGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGCATTCAGGAAATGAGAGAGGCCCTGCAGGAGAAG actttatcattactcatcacttctatttttcatctccaccctctctccagCTAGTGGCCCGGCCTGATGTTGTGGAGATGCATGATGTGACTGCACAGGACCCCAAGGTCTTGGTCCACCTCAAGGCCACCCGGAACTCTGTCCCTGTACCACGCCACTGGTGTTTTAAGCGTAAGTACCTTCATGGCAAAAGGGGCATTGAGAAGCCCCCTTTTGAGCTGCCAGATTTCATCAAACGCACAGGTATTCAGGAAATGAGAGAAGCCCTACAAGAGAAGgttagaaagattggaaggtgacgaaggaatagtgcacttcctctttcaag Alignment from GeneWise CTGGTGGCCCGGCCTGATGTTGTGGAGATGCATGACGTGACGGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCCGTCCCTGTGCCACGCCACTGGTGTTTTAAGCGCAAGTACCTTCAAGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGCATTCAGGAAATGAGAGAGGCCCTGCAGGAGAAG actttatcattactcatcacttctatttttcatctccaccctctctccagCTAGTGGCCCGGCCTGATGTTGTGGAGATGCATGATGTGACTGCACAGGACCCCAAGGTCTTGGTCCACCTCAAGGCCACCCGGAACTCTGTCCCTGTACCACGCCACTGGTGTTTTAAGCGTAAGTACCTTCATGGCAAAAGGGGCATTGAGAAGCCCCCTTTTGAGCTGCCAGATTTCATCAAACGCACAGGTATTCAGGAAATGAGAGAAGCCCTACAAGAGAAGgttagaaagattggaaggtgacgaaggaatagtgcacttcctctttcaag #### Sf3b2_ID912_6 --> 2 - 0 Original Alignment taGCTGCTCCAGTAGGCCCTGTGGTTCCCACGCCTACGGTTTTGCCCATGGGGGCACCTGTTCCTCGCCCTCGGGGTCCCCCCCCACCCCCTGGAGATGAGAACAGAGAG aatgattccagagggaaagttaactgacaactccttaacttttgtttcagtgGCTGCTCCAGTAGGCCCTGTGGTTCCTGCGCCTGCAGTTTTGCCCATGGGGGCACCCGTACCTCGCCCCCAGGGTTCCCCTCCACCCCCAGGAGATGAGAACAGAGAGgtaagtgcttactgatctgttcccacaggcttagtctatgccgtagctga Alignment from CESAR taGCTGCTCCAGTAGGCCCTGTGGTTCCCACGCCTACGGTTTTGCCCATGGGGGCACCTGTTCCTCGCCCTCGGGGTCCCCCCCCACCCCCTGGAGATGAGAACAGAGAG aatgattccagagggaaagttaactgacaactccttaacttttgtttcagtgGCTGCTCCAGTAGGCCCTGTGGTTCCTGCGCCTGCAGTTTTGCCCATGGGGGCACCCGTACCTCGCCCCCAGGGTTCCCCTCCACCCCCAGGAGATGAGAACAGAGAGgtaagtgcttactgatctgttcccacaggcttagtctatgccgtagctga Alignment from Spaln_aa2Genome TAGCTGCTCCAGTAGGCCCTGTGGTTCCCACGCCTACGGTTTTGCCCATGGGGGCACCTGTTCCTCGCCCTCGGGGTCCCCCCCCACCCCCTGGAGATGAGAACAGAGAG aatgattccagagggaaagttaactgacaactccttaacttttgtttcagTGGCTGCTCCAGTAGGCCCTGTGGTTCCTGCGCCTGCAGTTTTGCCCATGGGGGCACCCGTACCTCGCCCCCAGGGTTCCCCTCCACCCCCAGGAGATGAGAACAGAGAGgtaagtgcttactgatctgttcccacaggcttagtctatgccgtagctga Alignment from Spaln_nt2Genome TAGCTGCTCCAGTAGGCCCTGTGGTTCCCACGCCTACGGTTTTGCCCATGGGGGCACCTGTTCCTCGCCCTCGGGGTCCCCCCCCACCCCCTGGAGATGAGAACAGAGAG aatgattccagagggaaagttaactgacaactccttaacttttgtttcagTGGCTGCTCCAGTAGGCCCTGTGGTTCCTGCGCCTGCAGTTTTGCCCATGGGGGCACCCGTACCTCGCCCCCAGGGTTCCCCTCCACCCCCAGGAGATGAGAACAGAGAGgtaagtgcttactgatctgttcccacaggcttagtctatgccgtagctga Alignment from Pairagon TAGCTGCTCCAGTAGGCCCTGTGGTTCCCACGCCTACGGTTTTGCCCATGGGGGCACCTGTTCCTCGCCCTCGGGGTCCCCCCCCACCCCCTGGAGATGAGAACAGAGAG aatgattccagagggaaagttaactgacaactccttaacttttgtttcagTGGCTGCTCCAGTAGGCCCTGTGGTTCCTGCGCCTGCAGTTTTGCCCATGGGGGCACCCGTACCTCGCCCCCAGGGTTCCCCTCCACCCCCAGGAGATGAGAACAGAGAGgtaagtgcttactgatctgttcccacaggcttagtctatgccgtagctga Alignment from Exonerate_protein2genome TAGCTGCTCCAGTAGGCCCTGTGGTTCCCACGCCTACGGTTTTGCCCATGGGGGCACCTGTTCCTCGCCCTCGGGGTCCCCCCCCACCCCCTGGAGATGAGAACAGAGAG aatgattccagagggaaagttaactgacaactccttaacttttgtttcagTGGCTGCTCCAGTAGGCCCTGTGGTTCCTGCGCCTGCAGTTTTGCCCATGGGGGCACCCGTACCTCGCCCCCAGGGTTCCCCTCCACCCCCAGGAGATGAGAACAGAGAGgtaagtgcttactgatctgttcccacaggcttagtctatgccgtagctga Alignment from Exonerate_coding2genome TAGCTGCTCCAGTAGGCCCTGTGGTTCCCACGCCTACGGTTTTGCCCATGGGGGCACCTGTTCCTCGCCCTCGGGGTCCCCCCCCACCCCCTGGAGATGAGAACAGAGAG aatgattccagagggaaagttaactgacaactccttaacttttgtttcagTGGCTGCTCCAGTAGGCCCTGTGGTTCCTGCGCCTGCAGTTTTGCCCATGGGGGCACCCGTACCTCGCCCCCAGGGTTCCCCTCCACCCCCAGGAGATGAGAACAGAGAGgtaagtgcttactgatctgttcccacaggcttagtctatgccgtagctga Alignment from GeneWise TAGCTGCTCCAGTAGGCCCTGTGGTTCCCACGCCTACGGTTTTGCCCATGGGGGCACCTGTTCCTCGCCCTCGGGGTCCCCCCCCACCCCCTGGAGATGAGAACAGAGAG aatgattccagagggaaagttaactgacaactccttaacttttgtttcagTGGCTGCTCCAGTAGGCCCTGTGGTTCCTGCGCCTGCAGTTTTGCCCATGGGGGCACCCGTACCTCGCCCCCAGGGTTCCCCTCCACCCCCAGGAGATGAGAACAGAGAGgtaagtgcttactgatctgttcccacaggcttagtctatgccgtagctga #### Sfr1_ID10328_2 --> 2 - 0 Original Alignment gaAATCAGGAGTTCACTTCCAAGATGGAAAACTCATCAGATTCAGCATCGACTTCACCTGATGCTCCTCAGCCCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGACCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGTTCCTCAGACCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCATTCGAATAGTTCAGGAAAACAA cttatttaggataagctgaacatcctagtgctttgggccttgtttttcaggaAAACAAGAGTTTACTTCCAAGATGGATAATTCATCAGATTCAGCATCAGCTTCACCTGACGCTCCACAGCCGAGTGAGAACCCCCCTTCCCCACCAACATCACCAGCTGCTCCTCAGACCAGTGAAAATCCAACATCACCACCTACTTCTCCTGCAATTCCTCAGACAAGGGAGAACCCACCATCACCACCAACGTCACCTGCAGCTCCTCAACCCAGGGAGAACCCTCCTTCACCACCAATCTCACCTGCTGCTTCTCAGCCAAGGGAGAACCCACCGTCACCTCCAACCTCTCATGCTGCTCCTCAGCCCAGGGAGAATCCACCATCACCTCATTCAAATAGTTCCGGCAAACAGgtaagcatacatgatttgtagtccgaattacctgattggttctagagtat Alignment from CESAR gaAATCAGGAGTTCACTTCCAAGATGGAAAACTCATCAGATTCAGCATCGACTTCACCTGATGCTCCTCAGCCCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGACCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGTTCCTCAGACCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCATTCGAATAGTTCAGGAAAACAA cttatttaggataagctgaacatcctagtgctttgggccttgtttttcaggaAAACAAGAGTTTACTTCCAAGATGGATAATTCATCAGATTCAGCATCAGCTTCACCTGACGCTCCACAGCCGAGTGAGAACCCCCCTTCCCCACCAACATCACCAGCTGCTCCTCAGACCAGTGAAAATCCAACATCACCACCTACTTCTCCTGCAATTCCTCAGACAAGGGAGAACCCACCATCACCACCAACGTCACCTGCAGCTCCTCAACCCAGGGAGAACCCTCCTTCACCACCAATCTCACCTGCTGCTTCTCAGCCAAGGGAGAACCCACCGTCACCTCCAACCTCTCATGCTGCTCCTCAGCCCAGGGAGAATCCACCATCACCTCATTCAAATAGTTCCGGCAAACAGgtaagcatacatgatttgtagtccgaattacctgattggttctagagtat Alignment from Spaln_aa2Genome GAAATCAGGAGTTCACTTCCAAGATGGAAAACTCATCAGATTCAGCATCGACTTCACCTGAT------------- GCTCCTCAGCCCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGACCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGTTCCTCAGACCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCCGACTTCACCTGCCGCTCCTCAGCCCA cttatttaggataagctgaacatcctagtgctttgggccttgtttttcagGAAAACAAGAGTTTACTTCCAAGATGGATAATTCATCAGATTCAGCATCAGCTTCACCTGACGCTCCACAGCCGAgtgagaaccccccttccccaccaacatcaccagCTGCTCCTCAGACCAGTGAAAATCCAACATCACCACCTACTTCTCCTGCAATTCCTCAGACAAGGGAGAACCCACCATCACCACCAACGTCACCTGCAGCTCCTCAACCCAGGGAGAACCCTCCTTCACCACCAATCTCACCTGCTGCTTCTCAGCCAAGGGAGAACCCACCGTCACCTCCAACCTCTCATGCTGCTCCTCAGCCCAGGGAGAATCCACCATCACCTCATTCAAATAGTTCCGGCAAACAGGTAAgcatacatgatttgtagtccgaattacctgattggttctagagtat Alignment from Spaln_nt2Genome GAAATCAGGAGTTCACTTCCAAGATGGAAAACTCATCAGATTCAGCATCGACTTCACCTGA- -TGCTCCTCAGCCCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGACCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGTTCCTCAGACCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCCGACTTCACCTGCCGCTCCTCAG C cttatttaggataagctgaacatcctagtgctttgggccttgtttttcagGAAAACAAGAGTTTACTTCCAAGATGGATAATTCATCAGATTCAGCATCAGCTTCACCTGACgctccacagccgagtgagaaccccccttccccaccaacatcaccagCTGCTCCTCAGACCAGTGAAAATCCAACATCACCACCTACTTCTCCTGCAATTCCTCAGACAAGGGAGAACCCACCATCACCACCAACGTCACCTGCAGCTCCTCAACCCAGGGAGAACCCTCCTTCACCACCAATCTCACCTGCTGCTTCTCAGCCAAGGGAGAACCCACCGTCACCTCCAACCTCTCATGCTGCTCCTCAGCCCAGGGAGAATCCACCATCACCTCATTCAAATAGTTCCGGCAAACAGgtaagcatacatgatttgtagtccgaattacctgattggttctagAgtat Alignment from Pairagon GAAATCAGGAGTTCACTTCCAAGATGGAAAACTCATCAGATTCAGCATCGACTTCACCTGATGCTCCTCAGCCCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGACCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGTTCCTCAGACCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCATTCGAATAGTTCAGGAAAACAA cttatttaggataagctgaacatcctagtgctttgggccttgtttttcagGAAAACAAGAGTTTACTTCCAAGATGGATAATTCATCAGATTCAGCATCAGCTTCACCTGACGCTCCACAGCCGAGTGAGAACCCCCCTTCCCCACCAACATCACCAGCTGCTCCTCAGACCAGTGAAAATCCAACATCACCACCTACTTCTCCTGCAATTCCTCAGACAAGGGAGAACCCACCATCACCACCAACGTCACCTGCAGCTCCTCAACCCAGGGAGAACCCTCCTTCACCACCAATCTCACCTGCTGCTTCTCAGCCAAGGGAGAACCCACCGTCACCTCCAACCTCTCATGCTGCTCCTCAGCCCAGGGAGAATCCACCATCACCTCATTCAAATAGTTCCGGCAAACAGgtaagcatacatgatttgtagtccgaattacctgattggttctagagtat Alignment from Exonerate_protein2genome GAAGGAAATCAGGAGTTCACTTCCAAGATGGAAAACTCATCAGATTCAGCATCGACTTCACCTGATGCTCCTCAGCCCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGACCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGTTCCTCAGACCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCATTCGAATAGTTCAGGAAAACAA cttatttaggataagctgaacatcctagtgctttgggccttgttttTCAGGAAAACAAGAGTTTACTTCCAAGATGGATAATTCATCAGATTCAGCATCAGCTTCACCTGACGCTCCACAGCCGAGTGAGAACCCCCCTTCCCCACCAACATCACCAGCTGCTCCTCAGACCAGTGAAAATCCAACATCACCACCTACTTCTCCTGCAATTCCTCAGACAAGGGAGAACCCACCATCACCACCAACGTCACCTGCAGCTCCTCAACCCAGGGAGAACCCTCCTTCACCACCAATCTCACCTGCTGCTTCTCAGCCAAGGGAGAACCCACCGTCACCTCCAACCTCTCATGCTGCTCCTCAGCCCAGGGAGAATCCACCATCACCTCATTCAAATAGTTCCGGCAAACAGgtaagcatacatgatttgtagtccgaattacctgattggttctagagtat Alignment from Exonerate_coding2genome GAAGGAAATCAGGAGTTCACTTCCAAGATGGAAAACTCATCAGATTCAGCATCGACTTCACCTGATGCTCCTCAGCCCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGACCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGTTCCTCAGACCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCATTCGAATAGTTCAGGAAAACAA cttatttaggataagctgaacatcctagtgctttgggccttgttttTCAGGAAAACAAGAGTTTACTTCCAAGATGGATAATTCATCAGATTCAGCATCAGCTTCACCTGACGCTCCACAGCCGAGTGAGAACCCCCCTTCCCCACCAACATCACCAGCTGCTCCTCAGACCAGTGAAAATCCAACATCACCACCTACTTCTCCTGCAATTCCTCAGACAAGGGAGAACCCACCATCACCACCAACGTCACCTGCAGCTCCTCAACCCAGGGAGAACCCTCCTTCACCACCAATCTCACCTGCTGCTTCTCAGCCAAGGGAGAACCCACCGTCACCTCCAACCTCTCATGCTGCTCCTCAGCCCAGGGAGAATCCACCATCACCTCATTCAAATAGTTCCGGCAAACAGgtaagcatacatgatttgtagtccgaattacctgattggttctagagtat Alignment from GeneWise GCTGAGGAAGGAAATCAGGAGTTCACTTCCAAGATGGAAAACTCATCAGATTCAGCATCGACTTCACCTGATGCTCCTCAGCCCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGACCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGTTCCTCAGACCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCATTCGAATAGTTCAGGAAAACAA cttatttaggataagctgaacatcctagtgctttgggcctTGTTTTTCAGGAAAACAAGAGTTTACTTCCAAGATGGATAATTCATCAGATTCAGCATCAGCTTCACCTGACGCTCCACAGCCGAGTGAGAACCCCCCTTCCCCACCAACATCACCAGCTGCTCCTCAGACCAGTGAAAATCCAACATCACCACCTACTTCTCCTGCAATTCCTCAGACAAGGGAGAACCCACCATCACCACCAACGTCACCTGCAGCTCCTCAACCCAGGGAGAACCCTCCTTCACCACCAATCTCACCTGCTGCTTCTCAGCCAAGGGAGAACCCACCGTCACCTCCAACCTCTCATGCTGCTCCTCAGCCCAGGGAGAATCCACCATCACCTCATTCAAATAGTTCCGGCAAACAGgtaagcatacatgatttgtagtccgaattacctgattggttctagagtat #### Sfxn2_ID9966_4 --> 1 - 0 Original Alignment gCAGATGGCCCTCTCCTACTTCACAGCTACTACTACTGCGGTGGCCACTGCAGTGGGCATGAACATGTGGACAAAG ctacaacctcatttctccctggtgctatatgtattttacttcccctttaggCAT---------------TTCATGGCCACAACTACTGCAGTGGCCACTGCTGTGGGCATGAACATGTGGACAAAGgtaactacgcgtgctgggagaaccactgccctcttcaaagttgtcagaca Alignment from CESAR gCAGATGGCCCTCTCCTACTTCACAGCTACTACTACTGCGGTGGCCACTGCAGTGGGCATGAACATGTGGACAAAG ctacaacctcatttctccctggtgctatatgtattttacttcccctttaggCAT---------------TTCATGGCCACAACTACTGCAGTGGCCACTGCTGTGGGCATGAACATGTGGACAAAGgtaactacgcgtgctgggagaaccactgccctcttcaaagttgtcagaca Alignment from Spaln_aa2Genome CTACTTCACAGCTACTACTACTGCGGTGGCCACTGCAGTGGGCATGAACATGTGGACAAAG ctacaacctcatttctccctggtgctatatgtattttacttcccctttagGCATTTCATGGCCACAACTACTGCAGTGGCCACTGCTGTGGGCATGAACATGTGGACAAAGgtaactacgcgtgctgggagaaccactgccctcttcaaagttgtcagaca Alignment from Spaln_nt2Genome CTACTTCACAGCTACTACTACTGCGGTGGCCACTGCAGTGGGCATGAACATGTGGACAAAG ctacaacctcatttctccctggtgctatatgtattttacttcccctttagGCATTTCATGGCCACAACTACTGCAGTGGCCACTGCTGTGGGCATGAACATGTGGACAAAGgtaactacgcgtgctgggagaaccactgccctcttcaaagttgtcagaca Alignment from Pairagon GCAGATGGCCCTCTCCTACTTCACAGCTACTACTACTGCGGTGGCCACTGCAGTGGGCATGAACATGTGGACAAAG ctacaacctcatttctccctggtgctatatgtattttacttcccctttagGC---------------ATTTCATGGCCACAACTACTGCAGTGGCCACTGCTGTGGGCATGAACATGTGGACAAAGgtaactacgcgtgctgggagaaccactgccctcttcaaagttgtcagaca Alignment from Exonerate_protein2genome CTACTTCACAGCTACTACTACTGCGGTGGCCACTGCAGTGGGCATGAACATGTGGACAAAG ctacaacctcatttctccctggtgctatatgtattttacttcccctttagGCATTTCATGGCCACAACTACTGCAGTGGCCACTGCTGTGGGCATGAACATGTGGACAAAGgtaactacgcgtgctgggagaaccactgccctcttcaaagttgtcagaca Alignment from Exonerate_coding2genome CTACTTCACAGCTACTACTACTGCGGTGGCCACTGCAGTGGGCATGAACATGTGGACAAAG ctacaacctcatttctccctggtgctatatgtattttacttcccctttagGCATTTCATGGCCACAACTACTGCAGTGGCCACTGCTGTGGGCATGAACATGTGGACAAAGgtaactacgcgtgctgggagaaccactgccctcttcaaagttgtcagaca Alignment from GeneWise GCAGATGGCCCTCTCCTACTTCACAGCTACTACTACTGCGGTGGCCACTGCAGTGGGCATGAACATGTGGACAAAG ctacaacctcatttctccctggtgctatatgtattttacttcccctttagG---------------CATTTCATGGCCACAACTACTGCAGTGGCCACTGCTGTGGGCATGAACATGTGGACAAAGgtaactacgcgtgctgggagaaccactgccctcttcaaagttgtcagaca #### Sfxn2_ID9970_8 --> 2 - 0 Original Alignment tcCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG tcttttatgggtagtggcacactcagatccaattcttatttaatttgtagccCTGTTGCCTGTCATTATGGAGAGACTAGAGAGACTACATCTGATGAAGgtgagttgtttcagtctctcttaatttctcacttcctcctcctgcttatg Alignment from CESAR tcCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG tcttttatgggtagtggcacactcagatccaattcttatttaatttgtagccCTGTTGCCTGTCATTATGGAGAGACTAGAGAGACTACATCTGATGAAGgtgagttgtttcagtctctcttaatttctcacttcctcctcctgcttatg Alignment from Spaln_aa2Genome TCCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG tcttttatgggtagtggcacactcagatccaattcttatttaatttgtagCCCTGTTGCCTGTCATTATGGAGAGACTAGAGAGACTACATCTGATGAAGgtgagttgtttcagtctctcttaatttctcacttcctcctcctgcttatg Alignment from Spaln_nt2Genome TCCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG tcttttatgggtagtggcacactcagatccaattcttatttaatttgtagCCCTGTTGCCTGTCATTATGGAGAGACTAGAGAGACTACATCTGATGAAGgtgagttgtttcagtctctcttaatttctcacttcctcctcctgcttatg Alignment from Pairagon TCCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG tcttttatgggtagtggcacactcagatccaattcttatttaatttgtagCCCTGTTGCCTGTCATTATGGAGAGACTAGAGAGACTACATCTGATGAAGgtgagttgtttcagtctctcttaatttctcacttcctcctcctgcttatg Alignment from Exonerate_protein2genome TCCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG tcttttatgggtagtggcacactcagatccaattcttatttaatttgtagCCCTGTTGCCTGTCATTATGGAGAGACTAGAGAGACTACATCTGATGAAGgtgagttgtttcagtctctcttaatttctcacttcctcctcctgcttatg Alignment from Exonerate_coding2genome TCAGGGCATCTG tcttttatgggtagtggcacactcagatccaattcttatttaatttgtagccctgttgcctgtcattatggagagactagagagactacatctgatgaaggtgagttgtttcagtctctcttaatttctcacttcctcCTCCTGCTTATG Alignment from GeneWise TCCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG tcttttatgggtagtggcacactcagatccaattcttatttaatttgtagCCCTGTTGCCTGTCATTATGGAGAGACTAGAGAGACTACATCTGATGAAGgtgagttgtttcagtctctcttaatttctcacttcctcctcctgcttatg #### Sfxn3_ID9285_3 --> 1 - 2 Original Alignment gAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGca ataaaaagcttatacacctgaacccagtagtcttcctataccctcgtcagaAAGACTCCCACTGTGGTGTTTTGGCAGTGGGTGAATCAATCATTTAATGCTATCATTAACTACTCTAATCGGAGTGGAGATGCTCCTATCACTGTCaggtatggcacacccccacacaagcatccctagtccccatggcttttgtgtc Alignment from CESAR gAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGca ataaaaagcttatacacctgaacccagtagtcttcctataccctcgtcagaAAGACTCCCACTGTGGTGTTTTGGCAGTGGGTGAATCAATCATTTAATGCTATCATTAACTACTCTAATCGGAGTGGAGATGCTCCTATCACTGTCaggtatggcacacccccacacaagcatccctagtccccatggcttttgtgtc Alignment from Spaln_aa2Genome GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ataaaaagcttatacacctgaacccagtagtcttcctataccctcgtcagAAAGACTCCCACTGTGGTGTTTTGGCAGTGGGTGAATCAATCATTTAATGCTATCATTAACTACTCTAATCGGAGTGGAGATGCTCCTATCACTGTCAGgtatggcacacccccacacaagcatccctagtccccatggcttttgtgtc Alignment from Spaln_nt2Genome GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ataaaaagcttatacacctgaacccagtagtcttcctataccctcgtcagAAAGACTCCCACTGTGGTGTTTTGGCAGTGGGTGAATCAATCATTTAATGCTATCATTAACTACTCTAATCGGAGTGGAGATGCTCCTATCACTGTCAGgtatggcacacccccacacaagcatccctagtccccatggcttttgtgtc Alignment from Pairagon GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ataaaaagcttatacacctgaacccagtagtcttcctataccctcgtcagAAAGACTCCCACTGTGGTGTTTTGGCAGTGGGTGAATCAATCATTTAATGCTATCATTAACTACTCTAATCGGAGTGGAGATGCTCCTATCACTGTCAGgtatggcacacccccacacaagcatccctagtccccatggcttttgtgtc Alignment from Exonerate_protein2genome GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ataaaaagcttatacacctgaacccagtagtcttcctataccctcgtcagAAAGACTCCCACTGTGGTGTTTTGGCAGTGGGTGAATCAATCATTTAATGCTATCATTAACTACTCTAATCGGAGTGGAGATGCTCCTATCACTGTCAGgtatggcacacccccacacaagcatccctagtccccatggcttttgtgtc Alignment from Exonerate_coding2genome ataaaaagcttatacacctgaacccagtagtcttcctataccctcgtcagaaagactcccactgtggtgttttggcagtgggtgaatcaatcatttaatgctatcattaactactctaatcggagtggagatgctcctatcactgtcaggtatggcacacccccacacaagcatccctagtccccatggcttttgtgtc Alignment from GeneWise GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ataaaaagcttatacacctgaacccagtagtcttcctataccctcgtcagAAAGACTCCCACTGTGGTGTTTTGGCAGTGGGTGAATCAATCATTTAATGCTATCATTAACTACTCTAATCGGAGTGGAGATGCTCCTATCACTGTCAGgtatggcacacccccacacaagcatccctagtccccatggcttttgtgtc #### Sfxn3_ID9287_5 --> 0 - 2 Original Alignment CACCTGCCCCCGCTAGTCGGTCGATTCGTGCCCTTTGCAGCTGTGGCCGCTGCCAACTGCATCAACATCCCCCTGATGAGGCAGag agtcaccacttgccactctgcttctgaacactggcctgtctactttgcagCACCTGCCCCCACTGGTTGGTCGGTTTGTACCGTATGCATCTGTAGCTGCTGCCAACTGCATAAACATACCTTTAATGAGGCAGaggtgagtgatccccagctcctgacccaagtagccataaaactattactgga Alignment from CESAR CACCTGCCCCCGCTAGTCGGTCGATTCGTGCCCTTTGCAGCTGTGGCCGCTGCCAACTGCATCAACATCCCCCTGATGAGGCAGag agtcaccacttgccactctgcttctgaacactggcctgtctactttgcagCACCTGCCCCCACTGGTTGGTCGGTTTGTACCGTATGCATCTGTAGCTGCTGCCAACTGCATAAACATACCTTTAATGAGGCAGaggtgagtgatccccagctcctgacccaagtagccataaaactattactgga Alignment from Spaln_aa2Genome CACCTGCCCCCGCTAGTCGGTCGATTCGTGCCCTTTGCAGCTGTGGCCGCTGCCAACTGCATCAACATCCCCCTGATGAGGCAGAG agtcaccacttgccactctgcttctgaacactggcctgtctactttgcagCACCTGCCCCCACTGGTTGGTCGGTTTGTACCGTATGCATCTGTAGCTGCTGCCAACTGCATAAACATACCTTTAATGAGGCAGAGgtgagtgatccccagctcctgacccaagtagccataaaactattactgga Alignment from Spaln_nt2Genome CACCTGCCCCCGCTAGTCGGTCGATTCGTGCCCTTTGCAGCTGTGGCCGCTGCCAACTGCATCAACATCCCCCTGATGAGGCAGAG agtcaccacttgccactctgcttctgaacactggcctgtctactttgcagCACCTGCCCCCACTGGTTGGTCGGTTTGTACCGTATGCATCTGTAGCTGCTGCCAACTGCATAAACATACCTTTAATGAGGCAGAGgtgagtgatccccagctcctgacccaagtagccataaaactattactgga Alignment from Pairagon CACCTGCCCCCGCTAGTCGGTCGATTCGTGCCCTTTGCAGCTGTGGCCGCTGCCAACTGCATCAACATCCCCCTGATGAGGCAGAG agtcaccacttgccactctgcttctgaacactggcctgtctactttgcagCACCTGCCCCCACTGGTTGGTCGGTTTGTACCGTATGCATCTGTAGCTGCTGCCAACTGCATAAACATACCTTTAATGAGGCAGAGgtgagtgatccccagctcctgacccaagtagccataaaactattactgga Alignment from Exonerate_protein2genome CACCTGCCCCCGCTAGTCGGTCGATTCGTGCCCTTTGCAGCTGTGGCCGCTGCCAACTGCATCAACATCCCCCTGATGAGGCAGAG agtcaccacttgccactctgcttctgaacactggcctgtctactttgcagCACCTGCCCCCACTGGTTGGTCGGTTTGTACCGTATGCATCTGTAGCTGCTGCCAACTGCATAAACATACCTTTAATGAGGCAGAGgtgagtgatccccagctcctgacccaagtagccataaaactattactgga Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CACCTGCCCCCGCTAGTCGGTCGATTCGTGCCCTTTGCAGCTGTGGCCGCTGCCAACTGCATCAACATCCCCCTGATGAGGCAGAG agtcaccacttgccactctgcttctgaacactggcctgtctactttgcagCACCTGCCCCCACTGGTTGGTCGGTTTGTACCGTATGCATCTGTAGCTGCTGCCAACTGCATAAACATACCTTTAATGAGGCAGAGgtgagtgatccccagctcctgacccaagtagccataaaactattactgga #### Sgms1_ID6687_2 --> 1 - 0 Original Alignment gTCTATTATTAGCAGAAGATTTTTCTGCATAGTTGGCACGCTGTACCTGTATCGGTGTATTACAATGTATGTAACTACACTCCCAGTACCTGGCATGCATTTCAACTGTTCTCCGAAG gtgtaagttgcagtggggtctcttaaattattttaaaacctttattacaggTCAATTACTAGTCGCAGGTTTTTCTGCATAGTTGGAACATTGCACCTGTATCAGTGCATAACAATG---GTAAGTACACTCCCAGTACCTGGCATGCACTTCAACTGTTCATCAAAGgtacgttgctctaccaagtggtgtcatatatttaggtgtcatatatttac Alignment from CESAR gTCTATTATTAGCAGAAGATTTTTCTGCATAGTTGGCACGCTGTACCTGTATCGGTGTATTACAATGTATGTAACTACACTCCCAGTACCTGGCATGCATTTCAACTGTTCTCCGAAG gtgtaagttgcagtggggtctcttaaattattttaaaacctttattacaggTCAATTACTAGTCGCAGGTTTTTCTGCATAGTTGGAACATTGCACCTGTATCAGTGCATAACAATG---GTAAGTACACTCCCAGTACCTGGCATGCACTTCAACTGTTCATCAAAGgtacgttgctctaccaagtggtgtcatatatttaggtgtcatatatttac Alignment from Spaln_aa2Genome GTCTATTATTAGCAGAAGATTTTTCTGCATAGTTGGCACGCTGTACCTGTATCGGTGTATTACAATGTATGTAACTACACTCCCAGTACCTGGCATGCATTTCAACTGTTCTCCGAAG gtgtaagttgcagtggggtctcttaaattattttaaaacctttattacagGTCAATTACTAGTCGCAGGTTTTTCTGCATAGTTGGAACATTGCACCTGTATCAGTGCATAACAATG---GTAAGTACACTCCCAGTACCTGGCATGCACTTCAACTGTTCATCAAAGgtacgttgctctaccaagtggtgtcatatatttaggtgtcatatatttac Alignment from Spaln_nt2Genome GTCTATTATTAGCAGAAGATTTTTCTGCATAGTTGGCACGCTGTACCTGTATCGGTGTATTACAATGTATGTAACTACACTCCCAGTACCTGGCATGCATTTCAACTGTTCTCCGAAG gtgtaagttgcagtggggtctcttaaattattttaaaacctttattacagGTCAATTACTAGTCGCAGGTTTTTCTGCATAGTTGGAACATTGCACCTGTATCAGTGCATAACAATG---GTAAGTACACTCCCAGTACCTGGCATGCACTTCAACTGTTCATCAAAGgtacgttgctctaccaagtggtgtcatatatttaggtgtcatatatttac Alignment from Pairagon GTCTATTATTAGCAGAAGATTTTTCTGCATAGTTGGCACGCTGTACCTGTATCGGTGTATTACAATGTATGTAACTACACTCCCAGTACCTGGCATGCATTTCAACTGTTCTCCGAAG gtgtaagttgcagtggggtctcttaaattattttaaaacctttattacagGTCAATTACTAGTCGCAGGTTTTTCTGCATAGTTGGAACATTGCACCTGTATCAGTGCATAACAATG---GTAAGTACACTCCCAGTACCTGGCATGCACTTCAACTGTTCATCAAAGgtacgttgctctaccaagtggtgtcatatatttaggtgtcatatatttac Alignment from Exonerate_protein2genome GTCTATTATTAGCAGAAGATTTTTCTGCATAGTTGGCACGCTGTACCTGTATCGGTGTATTACAATGTATGTAACTACACTCCCAGTACCTGGCATGCATTTCAACTGTTCTCCGAAG gtgtaagttgcagtggggtctcttaaattattttaaaacctttattacagGTCAATTACTAGTCGCAGGTTTTTCTGCATAGTTGGAACATTGCACCTGTATCAGTGCATAACAATG---GTAAGTACACTCCCAGTACCTGGCATGCACTTCAACTGTTCATCAAAGgtacgttgctctaccaagtggtgtcatatatttaggtgtcatatatttac Alignment from Exonerate_coding2genome GTCTATTATTAGCAGAAGATTTTTCTGCATAGTTGGCACGCTGTACCTGTATCGGTGTATTACAATGTATGTAACTACACTCCCAGTACCTGGCATGCATTTCAACTGTTCTCCGAAG gtgtaagttgcagtggggtctcttaaattattttaaaacctttattacagGTCAATTACTAGTCGCAGGTTTTTCTGCATAGTTGGAACATTGCACCTGTATCAGTGCATAACAATG---GTAAGTACACTCCCAGTACCTGGCATGCACTTCAACTGTTCATCAAAGgtacgttgctctaccaagtggtgtcatatatttaggtgtcatatatttac Alignment from GeneWise GTCTATTATTAGCAGAAGATTTTTCTGCATAGTTGGCACGCTGTACCTGTATCGGTGTATTACAATGTATGTAACTACACTCCCAGTACCTGGCATGCATTTCAACTGTTCTCCGAAG gtgtaagttgcagtggggtctcttaaattattttaaaacctttattacagGTCAATTACTAGTCGCAGGTTTTTCTGCATAGTTGGAACATTGCACCTGTATCAGTGCATAACAATG---GTAAGTACACTCCCAGTACCTGGCATGCACTTCAACTGTTCATCAAAGgtacgttgctctaccaagtggtgtcatatatttaggtgtcatatatttac #### Sh3pxd2a_ID10176_10 --> 2 - 1 Original Alignment tgTCCAAGAGACGCAAGGCACACCTGCGGCGCCTGGATCGCCGGTGGACCCTGGGCGGGATGGTCAACAGGCAGCACAGCCGAg agtttatttatagatgccaggaagtggacacgcccttcgtctccccctagtgTCCAAGAGACGCAAGGCGCACCTGCGGTGCCTCGATCGCCGGTGGACCCTAGGCGGAATAGTGAATAGGCAGCACAGCCGAggtaagcataggcttgtgtttctcctgatttggcatgcccctcaataagat Alignment from CESAR tgTCCAAGAGACGCAAGGCACACCTGCGGCGCCTGGATCGCCGGTGGACCCTGGGCGGGATGGTCAACAGGCAGCACAGCCGAg agtttatttatagatgccaggaagtggacacgcccttcgtctccccctagtgTCCAAGAGACGCAAGGCGCACCTGCGGTGCCTCGATCGCCGGTGGACCCTAGGCGGAATAGTGAATAGGCAGCACAGCCGAggtaagcataggcttgtgtttctcctgatttggcatgcccctcaataagat Alignment from Spaln_aa2Genome TGTCCAAGAGACGCAAGGCACACCTGCGGCGCCTGGATCGCCGGTGGACCCTGGGCGGGATGGTCAACAGGCAGCACAGCCGAG agtttatttatagatgccaggaagtggacacgcccttcgtctccccctagTGTCCAAGAGACGCAAGGCGCACCTGCGGTGCCTCGATCGCCGGTGGACCCTAGGCGGAATAGTGAATAGGCAGCACAGCCGAGgtaagcataggcttgtgtttctcctgatttggcatgcccctcaataagat Alignment from Spaln_nt2Genome TGTCCAAGAGACGCAAGGCACACCTGCGGCGCCTGGATCGCCGGTGGACCCTGGGCGGGATGGTCAACAGGCAGCACAGCCGAG agtttatttatagatgccaggaagtggacacgcccttcgtctccccctagTGTCCAAGAGACGCAAGGCGCACCTGCGGTGCCTCGATCGCCGGTGGACCCTAGGCGGAATAGTGAATAGGCAGCACAGCCGAGgtaagcataggcttgtgtttctcctgatttggcatgcccctcaataagat Alignment from Pairagon TGTCCAAGAGACGCAAGGCACACCTGCGGCGCCTGGATCGCCGGTGGACCCTGGGCGGGATGGTCAACAGGCAGCACAGCCGAG agtttatttatagatgccaggaagtggacacgcccttcgtctccccctagTGTCCAAGAGACGCAAGGCGCACCTGCGGTGCCTCGATCGCCGGTGGACCCTAGGCGGAATAGTGAATAGGCAGCACAGCCGAGgtaagcataggcttgtgtttctcctgatttggcatgcccctcaataagat Alignment from Exonerate_protein2genome TGTCCAAGAGACGCAAGGCACACCTGCGGCGCCTGGATCGCCGGTGGACCCTGGGCGGGATGGTCAACAGGCAGCACAGCCGAG agtttatttatagatgccaggaagtggacacgcccttcgtctccccctagTGTCCAAGAGACGCAAGGCGCACCTGCGGTGCCTCGATCGCCGGTGGACCCTAGGCGGAATAGTGAATAGGCAGCACAGCCGAGgtaagcataggcttgtgtttctcctgatttggcatgcccctcaataagat Alignment from Exonerate_coding2genome TGTCCAAGAGACGCAAGGCACACCTGCGGCGCCTGGATCGCCGGTGGACCCTGGGCGGGATGGTCAACAGGCAGCACAGCCGAG agtttatttatagatgccaggaagtggacacgcccttcgtctccccctagTGTCCAAGAGACGCAAGGCGCACCTGCGGTGCCTCGATCGCCGGTGGACCCTAGGCGGAATAGTGAATAGGCAGCACAGCCGAGgtaagcataggcttgtgtttctcctgatttggcatgcccctcaataagat Alignment from GeneWise TGTCCAAGAGACGCAAGGCACACCTGCGGCGCCTGGATCGCCGGTGGACCCTGGGCGGGATGGTCAACAGGCAGCACAGCCGAG agtttatttatagatgccaggaagtggacacgcccttcgtctccccctagTGTCCAAGAGACGCAAGGCGCACCTGCGGTGCCTCGATCGCCGGTGGACCCTAGGCGGAATAGTGAATAGGCAGCACAGCCGAGgtaagcataggcttgtgtttctcctgatttggcatgcccctcaataagat #### Shoc2_ID11418_4 --> 0 - 0 Original Alignment AGTCTTTTATCCAGTCTTGTAAAATTGAATAGCTTGACCTTAGCTAGAAATTGCTTCCAGTTATATCCAGTGGGAGGTCCATCTCAGTTTTCCACCATTTATTCCCTCAACATGGAACACAATCGAATCAACAAAATCCCATTTGGAATTTTTTCCAGAGCTAAAGTGTTAAGTAAGCTGAATATGAAG catttcatcagatcactaaatgtcagtgtggtgatattgcttatttttagAGTCTTTTATCTAGTCTTATCAGATTGAATAGCTTGACTCTAGCAAGAACCTGCTTCCAGCTATATCTGGTGGGAGGTCCATCCCAGATCACCACAATCTATTCTCTCAACATGGGACACAATCGGATCAACAAAATCCCATTTGATATCTTTTCCAGGGCTAAAATCTTAAGTGAATTGAATATGAAGgtgaggatcctgtccatcgcgtatacaacatctctcattactctaatgcc Alignment from CESAR AGTCTTTTATCCAGTCTTGTAAAATTGAATAGCTTGACCTTAGCTAGAAATTGCTTCCAGTTATATCCAGTGGGAGGTCCATCTCAGTTTTCCACCATTTATTCCCTCAACATGGAACACAATCGAATCAACAAAATCCCATTTGGAATTTTTTCCAGAGCTAAAGTGTTAAGTAAGCTGAATATGAAG catttcatcagatcactaaatgtcagtgtggtgatattgcttatttttagAGTCTTTTATCTAGTCTTATCAGATTGAATAGCTTGACTCTAGCAAGAACCTGCTTCCAGCTATATCTGGTGGGAGGTCCATCCCAGATCACCACAATCTATTCTCTCAACATGGGACACAATCGGATCAACAAAATCCCATTTGATATCTTTTCCAGGGCTAAAATCTTAAGTGAATTGAATATGAAGgtgaggatcctgtccatcgcgtatacaacatctctcattactctaatgcc Alignment from Spaln_aa2Genome AGTCTTTTATCCAGTCTTGTAAAATTGAATAGCTTGACCTTAGCTAGAAATTGCTTCCAGTTATATCCAGTGGGAGGTCCATCTCAGTTTTCCACCATTTATTCCCTCAACATGGAACACAATCGAATCAACAAAATCCCATTTGGAATTTTTTCCAGAGCTAAAGTGTTAAGTAAGCTGAATATGAAG catttcatcagatcactaaatgtcagtgtggtgatattgcttatttttagAGTCTTTTATCTAGTCTTATCAGATTGAATAGCTTGACTCTAGCAAGAACCTGCTTCCAGCTATATCTGGTGGGAGGTCCATCCCAGATCACCACAATCTATTCTCTCAACATGGGACACAATCGGATCAACAAAATCCCATTTGATATCTTTTCCAGGGCTAAAATCTTAAGTGAATTGAATATGAAGgtgaggatcctgtccatcgcgtatacaacatctctcattactctaatgcc Alignment from Spaln_nt2Genome AGTCTTTTATCCAGTCTTGTAAAATTGAATAGCTTGACCTTAGCTAGAAATTGCTTCCAGTTATATCCAGTGGGAGGTCCATCTCAGTTTTCCACCATTTATTCCCTCAACATGGAACACAATCGAATCAACAAAATCCCATTTGGAATTTTTTCCAGAGCTAAAGTGTTAAGTAAGCTGAATATGAAG catttcatcagatcactaaatgtcagtgtggtgatattgcttatttttagAGTCTTTTATCTAGTCTTATCAGATTGAATAGCTTGACTCTAGCAAGAACCTGCTTCCAGCTATATCTGGTGGGAGGTCCATCCCAGATCACCACAATCTATTCTCTCAACATGGGACACAATCGGATCAACAAAATCCCATTTGATATCTTTTCCAGGGCTAAAATCTTAAGTGAATTGAATATGAAGgtgaggatcctgtccatcgcgtatacaacatctctcattactctaatgcc Alignment from Pairagon AGTCTTTTATCCAGTCTTGTAAAATTGAATAGCTTGACCTTAGCTAGAAATTGCTTCCAGTTATATCCAGTGGGAGGTCCATCTCAGTTTTCCACCATTTATTCCCTCAACATGGAACACAATCGAATCAACAAAATCCCATTTGGAATTTTTTCCAGAGCTAAAGTGTTAAGTAAGCTGAATATGAAG catttcatcagatcactaaatgtcagtgtggtgatattgcttatttttagAGTCTTTTATCTAGTCTTATCAGATTGAATAGCTTGACTCTAGCAAGAACCTGCTTCCAGCTATATCTGGTGGGAGGTCCATCCCAGATCACCACAATCTATTCTCTCAACATGGGACACAATCGGATCAACAAAATCCCATTTGATATCTTTTCCAGGGCTAAAATCTTAAGTGAATTGAATATGAAGgtgaggatcctgtccatcgcgtatacaacatctctcattactctaatgcc Alignment from Exonerate_protein2genome AGTCTTTTATCCAGTCTTGTAAAATTGAATAGCTTGACCTTAGCTAGAAATTGCTTCCAGTTATATCCAGTGGGAGGTCCATCTCAGTTTTCCACCATTTATTCCCTCAACATGGAACACAATCGAATCAACAAAATCCCATTTGGAATTTTTTCCAGAGCTAAAGTGTTAAGTAAGCTGAATATGAAG catttcatcagatcactaaatgtcagtgtggtgatattgcttatttttagAGTCTTTTATCTAGTCTTATCAGATTGAATAGCTTGACTCTAGCAAGAACCTGCTTCCAGCTATATCTGGTGGGAGGTCCATCCCAGATCACCACAATCTATTCTCTCAACATGGGACACAATCGGATCAACAAAATCCCATTTGATATCTTTTCCAGGGCTAAAATCTTAAGTGAATTGAATATGAAGgtgaggatcctgtccatcgcgtatacaacatctctcattactctaatgcc Alignment from Exonerate_coding2genome AGTCTTTTATCCAGTCTTGTAAAATTGAATAGCTTGACCTTAGCTAGAAATTGCTTCCAGTTATATCCAGTGGGAGGTCCATCTCAGTTTTCCACCATTTATTCCCTCAACATGGAACACAATCGAATCAACAAAATCCCATTTGGAATTTTTTCCAGAGCTAAAGTGTTAAGTAAGCTGAATATGAAG catttcatcagatcactaaatgtcagtgtggtgatattgcttatttttagAGTCTTTTATCTAGTCTTATCAGATTGAATAGCTTGACTCTAGCAAGAACCTGCTTCCAGCTATATCTGGTGGGAGGTCCATCCCAGATCACCACAATCTATTCTCTCAACATGGGACACAATCGGATCAACAAAATCCCATTTGATATCTTTTCCAGGGCTAAAATCTTAAGTGAATTGAATATGAAGgtgaggatcctgtccatcgcgtatacaacatctctcattactctaatgcc Alignment from GeneWise AGTCTTTTATCCAGTCTTGTAAAATTGAATAGCTTGACCTTAGCTAGAAATTGCTTCCAGTTATATCCAGTGGGAGGTCCATCTCAGTTTTCCACCATTTATTCCCTCAACATGGAACACAATCGAATCAACAAAATCCCATTTGGAATTTTTTCCAGAGCTAAAGTGTTAAGTAAGCTGAATATGAAG catttcatcagatcactaaatgtcagtgtggtgatattgcttatttttagAGTCTTTTATCTAGTCTTATCAGATTGAATAGCTTGACTCTAGCAAGAACCTGCTTCCAGCTATATCTGGTGGGAGGTCCATCCCAGATCACCACAATCTATTCTCTCAACATGGGACACAATCGGATCAACAAAATCCCATTTGATATCTTTTCCAGGGCTAAAATCTTAAGTGAATTGAATATGAAGgtgaggatcctgtccatcgcgtatacaacatctctcattactctaatgcc #### Shoc2_ID11421_7 --> 0 - 1 Original Alignment AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCg gcagttgaatatagaccatgtatgttcgtacaaatgtttctctgccacagGAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGAGGCATAGGCCACCTCACTAACCTCACTCACCTTGGTCTAGGCGAGAACCTACTCACTCACCTTCCTGAAGAAATTggtgggcactgggatgccatccatgattttgtatatctgacgttttaagaa Alignment from CESAR AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCg gcagttgaatatagaccatgtatgttcgtacaaatgtttctctgccacagGAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGAGGCATAGGCCACCTCACTAACCTCACTCACCTTGGTCTAGGCGAGAACCTACTCACTCACCTTCCTGAAGAAATTggtgggcactgggatgccatccatgattttgtatatctgacgttttaagaa Alignment from Spaln_aa2Genome AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCG gcagttgaatatagaccatgtatgttcgtacaaatgtttctctgccacagGAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGAGGCATAGGCCACCTCACTAACCTCACTCACCTTGGTCTAGGCGAGAACCTACTCACTCACCTTCCTGAAGAAATTGgtgggcactgggatgccatccatgattttgtatatctgacgttttaagaa Alignment from Spaln_nt2Genome AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCG gcagttgaatatagaccatgtatgttcgtacaaatgtttctctgccacagGAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGAGGCATAGGCCACCTCACTAACCTCACTCACCTTGGTCTAGGCGAGAACCTACTCACTCACCTTCCTGAAGAAATTGgtgggcactgggatgccatccatgattttgtatatctgacgttttaagaa Alignment from Pairagon AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCG gcagttgaatatagaccatgtatgttcgtacaaatgtttctctgccacagGAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGAGGCATAGGCCACCTCACTAACCTCACTCACCTTGGTCTAGGCGAGAACCTACTCACTCACCTTCCTGAAGAAATTGgtgggcactgggatgccatccatgattttgtatatctgacgttttaagaa Alignment from Exonerate_protein2genome AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCG gcagttgaatatagaccatgtatgttcgtacaaatgtttctctgccacagGAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGAGGCATAGGCCACCTCACTAACCTCACTCACCTTGGTCTAGGCGAGAACCTACTCACTCACCTTCCTGAAGAAATTGgtgggcactgggatgccatccatgattttgtatatctgacgttttaagaa Alignment from Exonerate_coding2genome AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCG gcagttgaatatagaccatgtatgttcgtacaaatgtttctctgccacagGAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGAGGCATAGGCCACCTCACTAACCTCACTCACCTTGGTCTAGGCGAGAACCTACTCACTCACCTTCCTGAAGAAATTGgtgggcactgggatgccatccatgattttgtatatctgacgttttaagaa Alignment from GeneWise AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCG gcagttgaatatagaccatgtatgttcgtacaaatgtttctctgccacagGAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGAGGCATAGGCCACCTCACTAACCTCACTCACCTTGGTCTAGGCGAGAACCTACTCACTCACCTTCCTGAAGAAATTGgtgggcactgggatgccatccatgattttgtatatctgacgttttaagaa #### Sipa1_ID1138_14 --> 1 - 0 Original Alignment gCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG ctcaattttctgttgggtgtggcatccttcccatctctttgttatttcaggCCA---CCTGGGAGCCTATCAGAAAAGATCTCTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAGGATTCGCAGAGAgtgggctgcctacctgggaagggtttaaagggctgccatgggacatggga Alignment from CESAR gCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG ctcaattttctgttgggtgtggcatccttcccatctctttgttatttcaggCCA---CCTGGGAGCCTATCAGAAAAGATCTCTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAGGATTCGCAGAGAgtgggctgcctacctgggaagggtttaaagggctgccatgggacatggga Alignment from Spaln_aa2Genome GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG ctcaattttctgttgggtgtggcatccttcccatctctttgttatttcagGCCA---CCTGGGAGCCTATCAGAAAAGATCTCTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAGGATTCGCAGAGAgtgggctgcctacctgggaagggtttaaagggctgccatgggacatggga Alignment from Spaln_nt2Genome GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG ctcaattttctgttgggtgtggcatccttcccatctctttgttatttcagGCC---ACCTGGGAGCCTATCAGAAAAGATCTCTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAGGATTCGCAGAGAgtgggctgcctacctgggaagggtttaaagggctgccatgggacatggga Alignment from Pairagon GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG ctcaattttctgttgggtgtggcatccttcccatctctttgttatttcagGCC---ACCTGGGAGCCTATCAGAAAAGATCTCTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAGGATTCGCAGAGAgtgggctgcctacctgggaagggtttaaagggctgccatgggacatggga Alignment from Exonerate_protein2genome GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG ctcaattttctgttgggtgtggcatccttcccatctctttgttatttcagGCCA---CCTGGGAGCCTATCAGAAAAGATCTCTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAGGATTCGCAGAGAgtgggctgcctacctgggaagggtttaaagggctgccatgggacatggga Alignment from Exonerate_coding2genome ctcaattttctgttgggtgtggcatccttcccatctctttgttatttcaggccacctgggagcctatcagaaaagatctctcatctagagtccatgctctggaaattgcaagaggattcgcagagagtgggctgcctacctgggaagggtttaaagggctgccatgggacatggga Alignment from GeneWise GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG ctcaattttctgttgggtgtggcatccttcccatctctttgttatttcagGCCA---CCTGGGAGCCTATCAGAAAAGATCTCTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAGGATTCGCAGAGAgtgggctgcctacctgggaagggtttaaagggctgccatgggacatggga #### Sipa1_ID1140_12 --> 2 - 1 Original Alignment ttATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGg g aggtttgacataattatcttcaccctttaagctacttccctctcacccagttATGCCAGAAGCTGCGACTGAAACCTTGGAT---GAATGGCAGTCCATCTCTGCAATCTCCTCCACTTGCAACACAATCTTGGAGTCCCTGTCTCGGGAAggtaaggctgttaattggatattagccagcagcatttctctgtggaacagg Alignment from CESAR ttATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGg g aggtttgacataattatcttcaccctttaagctacttccctctcacccagttATGCCAGAAGCTGCGACTGAAACCTTG---GATGAATGGCAGTCCATCTCTGCAATCTCCTCCACTTGCAACACAATCTTGGAGTCCCTGTCTCGGGAAggtaaggctgttaattggatattagccagaatgacttttgtcatcctcagg Alignment from Spaln_aa2Genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG G aggtttgacataattatcttcaccctttaagctacttccctctcacccagTTATGCCAGAAGCTGCGACTGAAACCTTG---GATGAATGGCAGTCCATCTCTGCAATCTCCTCCACTTGCAACACAATCTTGGAGTCCCTGTCTCGGGAAGgtaaggctgttaattggatattagccagcagcatttctctgtggaacagG Alignment from Spaln_nt2Genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG G aggtttgacataattatcttcaccctttaagctacttccctctcacccagTTATGCCAGAAGCTGCGACTGAAACCTT---GGATGAATGGCAGTCCATCTCTGCAATCTCCTCCACTTGCAACACAATCTTGGAGTCCCTGTCTCGGGAAGgtaaggctgttaattggatattagccagcagcatttctctgtggaacagG Alignment from Pairagon TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG G aggtttgacataattatcttcaccctttaagctacttccctctcacccagTTATGCCAGAAGCTGCGACTGAAACCTT---GGATGAATGGCAGTCCATCTCTGCAATCTCCTCCACTTGCAACACAATCTTGGAGTCCCTGTCTCGGGAAGgtaaggctgttaattggatattagccagcagcatttctctgtggaacagG Alignment from Exonerate_protein2genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG G aggtttgacataattatcttcaccctttaagctacttccctctcacccagTTATGCCAGAAGCTGCGACTGAAACCTTG---GATGAATGGCAGTCCATCTCTGCAATCTCCTCCACTTGCAACACAATCTTGGAGTCCCTGTCTCGGGAAGgtaaggctgttaattggatattagccagcagcatttctctgtggaacagG Alignment from Exonerate_coding2genome aggtttgacataattatcttcaccctttaagctacttccctctcacccagttatgccagaagctgcgactgaaaccttggatgaatggcagtccatctctgcaatctcctccacttgcaacacaatcttggagtccctgtctcgggaaggtaaggctgttaattggatattagccagcagcatttctctgtggaacagg Alignment from GeneWise TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG G aggtttgacataattatcttcaccctttaagctacttccctctcacccagTTATGCCAGAAGCTGCGACTGAAACCTTG---GATGAATGGCAGTCCATCTCTGCAATCTCCTCCACTTGCAACACAATCTTGGAGTCCCTGTCTCGGGAAGgtaaggctgttaattggatattagccagcagcatttctctgtggaacagG #### Sipa1_ID1143_9 --> 1 - 2 Original Alignment gAGCTTTTCGGAGCTCTATATGCTCTCTCTGAAGGAACCCAGCCGGCGGGGGGGTCCAGAGCCAGTACAGGATGAAACTGGGAAGTTGGTCATATTGCCTCCCACCAAGCAGCTGCTACATTTTTGCCTGAAAGACAGCAGCAGTCCTCCGGGGCCTGGGGATCTGACTGAGGAGAGGACAGAGTTCCTGCGCAGCCACAACTCCCTGTCATCTGGAag tatattgcatcactaatgcctatccactttcttgtgtttctccttggcaggAGTTTTTCGGAGCTCTATATGCTCTCTCTGAAGGAGCCCAGCCGACGAGGGGGTCCAGAGCCAGTACAGGATCAA---GGAAAGCTGGTCATACTGCCTCCCACCAAACAGCTATTGCATTTTTGTTTAAAAGATAGCAGCAGCCCCCTGGGGCCTGGGGACCTGACTGAGGAGAGGACAGAGTTCCTGCGTAGCCACAACTCCCTCTCATCTGGCaggttggttactagaggtggccttagggtctttgaccaagggagatgcttcc Alignment from CESAR gAGCTTTTCGGAGCTCTATATGCTCTCTCTGAAGGAACCCAGCCGGCGGGGGGGTCCAGAGCCAGTACAGGATGAAACTGGGAAGTTGGTCATATTGCCTCCCACCAAGCAGCTGCTACATTTTTGCCTGAAAGACAGCAGCAGTCCTCCGGGGCCTGGGGATCTGACTGAGGAGAGGACAGAGTTCCTGCGCAGCCACAACTCCCTGTCATCTGGAag tatattgcatcactaatgcctatccactttcttgtgtttctccttggcaggAGTTTTTCGGAGCTCTATATGCTCTCTCTGAAGGAGCCCAGCCGACGAGGGGGTCCAGAGCCAGTACAGGATCAA---GGAAAGCTGGTCATACTGCCTCCCACCAAACAGCTATTGCATTTTTGTTTAAAAGATAGCAGCAGCCCCCTGGGGCCTGGGGACCTGACTGAGGAGAGGACAGAGTTCCTGCGTAGCCACAACTCCCTCTCATCTGGCaggttggttactagaggtggccttagggtctttgaccaagggagatgcttcc Alignment from Spaln_aa2Genome GAGCTTTTCGGAGCTCTATATGCTCTCTCTGAAGGAACCCAGCCGGCGGGGGGGTCCAGAGCCAGTACAGGATGAAACTGGGAAGTTGGTCATATTGCCTCCCACCAAGCAGCTGCTACATTTTTGCCTGAAAGACAGCAGCAGTCCTCCGGGGCCTGGGGATCTGACTGAGGAGAGGACAGAGTTCCTGCGCAGCCACAACTCCCTGTCATCTGGAAG tatattgcatcactaatgcctatccactttcttgtgtttctccttggcagGAGTTTTTCGGAGCTCTATATGCTCTCTCTGAAGGAGCCCAGCCGACGAGGGGGTCCAGAGCCAGTACAGGATCAA---GGAAAGCTGGTCATACTGCCTCCCACCAAACAGCTATTGCATTTTTGTTTAAAAGATAGCAGCAGCCCCCTGGGGCCTGGGGACCTGACTGAGGAGAGGACAGAGTTCCTGCGTAGCCACAACTCCCTCTCATCTGGCAGgttggttactagaggtggccttagggtctttgaccaagggagatgcttcc Alignment from Spaln_nt2Genome GAGCTTTTCGGAGCTCTATATGCTCTCTCTGAAGGAACCCAGCCGGCGGGGGGGTCCAGAGCCAGTACAGGATGAAACTGGGAAGTTGGTCATATTGCCTCCCACCAAGCAGCTGCTACATTTTTGCCTGAAAGACAGCAGCAGTCCTCCGGGGCCTGGGGATCTGACTGAGGAGAGGACAGAGTTCCTGCGCAGCCACAACTCCCTGTCATCTGGAAG tatattgcatcactaatgcctatccactttcttgtgtttctccttggcagGAGTTTTTCGGAGCTCTATATGCTCTCTCTGAAGGAGCCCAGCCGACGAGGGGGTCCAGAGCCAGTACAGGATCAA---GGAAAGCTGGTCATACTGCCTCCCACCAAACAGCTATTGCATTTTTGTTTAAAAGATAGCAGCAGCCCCCTGGGGCCTGGGGACCTGACTGAGGAGAGGACAGAGTTCCTGCGTAGCCACAACTCCCTCTCATCTGGCAGgttggttactagaggtggccttagggtctttgaccaagggagatgcttcc Alignment from Pairagon GAGCTTTTCGGAGCTCTATATGCTCTCTCTGAAGGAACCCAGCCGGCGGGGGGGTCCAGAGCCAGTACAGGATGAAACTGGGAAGTTGGTCATATTGCCTCCCACCAAGCAGCTGCTACATTTTTGCCTGAAAGACAGCAGCAGTCCTCCGGGGCCTGGGGATCTGACTGAGGAGAGGACAGAGTTCCTGCGCAGCCACAACTCCCTGTCATCTGGAAG tatattgcatcactaatgcctatccactttcttgtgtttctccttggcagGAGTTTTTCGGAGCTCTATATGCTCTCTCTGAAGGAGCCCAGCCGACGAGGGGGTCCAGAGCCAGTACAGGATCAA---GGAAAGCTGGTCATACTGCCTCCCACCAAACAGCTATTGCATTTTTGTTTAAAAGATAGCAGCAGCCCCCTGGGGCCTGGGGACCTGACTGAGGAGAGGACAGAGTTCCTGCGTAGCCACAACTCCCTCTCATCTGGCAGgttggttactagaggtggccttagggtctttgaccaagggagatgcttcc Alignment from Exonerate_protein2genome GAGCTTTTCGGAGCTCTATATGCTCTCTCTGAAGGAACCCAGCCGGCGGGGGGGTCCAGAGCCAGTACAGGATGAAACTGGGAAGTTGGTCATATTGCCTCCCACCAAGCAGCTGCTACATTTTTGCCTGAAAGACAGCAGCAGTCCTCCGGGGCCTGGGGATCTGACTGAGGAGAGGACAGAGTTCCTGCGCAGCCACAACTCCCTGTCATCTGGAAG tatattgcatcactaatgcctatccactttcttgtgtttctccttggcagGAGTTTTTCGGAGCTCTATATGCTCTCTCTGAAGGAGCCCAGCCGACGAGGGGGTCCAGAGCCAGTACAGGATCAA---GGAAAGCTGGTCATACTGCCTCCCACCAAACAGCTATTGCATTTTTGTTTAAAAGATAGCAGCAGCCCCCTGGGGCCTGGGGACCTGACTGAGGAGAGGACAGAGTTCCTGCGTAGCCACAACTCCCTCTCATCTGGCAGgttggttactagaggtggccttagggtctttgaccaagggagatgcttcc Alignment from Exonerate_coding2genome GAGCTTTTCGGAGCTCTATATGCTCTCTCTGAAGGAACCCAGCCGGCGGGGGGGTCCAGAGCCAGTACAGGATGAAACTGGGAAGTTGGTCATATTGCCTCCCACCAAGCAGCTGCTACATTTTTGCCTGAAAGACAGCAGCAGTCCTCCGGGGCCTGGGGATCTGACTGAGGAGAGGACAGAGTTCCTGCGCAGCCACAACTCCCTGTCATCTGGA tatattgcatcactaatgcctatccactttcttgtgtttctccttggcagGAGTTTTTCGGAGCTCTATATGCTCTCTCTGAAGGAGCCCAGCCGACGAGGGGGTCCAGAGCCAGTACAGGATCAA---GGAAAGCTGGTCATACTGCCTCCCACCAAACAGCTATTGCATTTTTGTTTAAAAGATAGCAGCAGCCCCCTGGGGCCTGGGGACCTGACTGAGGAGAGGACAGAGTTCCTGCGTAGCCACAACTCCCTCTCATCTGGCaggttggttactagaggtggccttagggtctttgaccaagggagatgcttcc Alignment from GeneWise CTTTTCGGAGCTCTATATGCTCTCTCTGAAGGAACCCAGCCGGCGGGGGGGTCCAGAGCCAGTACAGGATGAAACTGGGAAGTTGGTCATATTGCCTCCCACCAAGCAGCTGCTACATTTTTGCCTGAAAGACAGCAGCAGTCCTCCGGGGCCTGGGGATCTGACTGAGGAGAGGACAGAGTTCCTGCGCAGCCACAACTCCCTGTCATCTGGAAG tatattgcatcactaatgcctatccactttcttgtgtttctccttggcaggagTTTTTCGGAGCTCTATATGCTCTCTCTGAAGGAGCCCAGCCGACGAGGGGGTCCAGAGCCAGTACAGGATCAA---GGAAAGCTGGTCATACTGCCTCCCACCAAACAGCTATTGCATTTTTGTTTAAAAGATAGCAGCAGCCCCCTGGGGCCTGGGGACCTGACTGAGGAGAGGACAGAGTTCCTGCGTAGCCACAACTCCCTCTCATCTGGCAGgttggttactagaggtggccttagggtctttgaccaagggagatgcttcc #### Sipa1_ID1146_6 --> 0 - 2 Original Alignment CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACag ttgagcacactgaaaatcatgtattttttaaacacaccttccctttgcagCTCCTAAGGAAACGTCACATCAGTAATGACATTGTGACCATTGTGTTTCAAGAGCCTGGCAGCAAGCCCTTCTGTCCTATGACAATATGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCATATGCATCTTGCACTCCCCACACATCATACaggtgagcatttggttaaactggtgtcttagggttgggtcaactgtcatggt Alignment from CESAR CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACag ttgagcacactgaaaatcatgtattttttaaacacaccttccctttgcagCTCCTAAGGAAACGTCACATCAGTAATGACATTGTGACCATTGTGTTTCAAGAGCCTGGCAGCAAGCCCTTCTGTCCTATGACAATATGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCATATGCATCTTGCACTCCCCACACATCATACaggtgagcatttggttaaactggtgtcttagggttgggtcaactgtcatggt Alignment from Spaln_aa2Genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgagcacactgaaaatcatgtattttttaaacacaccttccctttgcagCTCCTAAGGAAACGTCACATCAGTAATGACATTGTGACCATTGTGTTTCAAGAGCCTGGCAGCAAGCCCTTCTGTCCTATGACAATATGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCATATGCATCTTGCACTCCCCACACATCATACAGgtgagcatttggttaaactggtgtcttagggttgggtcaactgtcatggt Alignment from Spaln_nt2Genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgagcacactgaaaatcatgtattttttaaacacaccttccctttgcagCTCCTAAGGAAACGTCACATCAGTAATGACATTGTGACCATTGTGTTTCAAGAGCCTGGCAGCAAGCCCTTCTGTCCTATGACAATATGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCATATGCATCTTGCACTCCCCACACATCATACAGgtgagcatttggttaaactggtgtcttagggttgggtcaactgtcatggt Alignment from Pairagon CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgagcacactgaaaatcatgtattttttaaacacaccttccctttgcagCTCCTAAGGAAACGTCACATCAGTAATGACATTGTGACCATTGTGTTTCAAGAGCCTGGCAGCAAGCCCTTCTGTCCTATGACAATATGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCATATGCATCTTGCACTCCCCACACATCATACAGgtgagcatttggttaaactggtgtcttagggttgggtcaactgtcatggt Alignment from Exonerate_protein2genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgagcacactgaaaatcatgtattttttaaacacaccttccctttgcagCTCCTAAGGAAACGTCACATCAGTAATGACATTGTGACCATTGTGTTTCAAGAGCCTGGCAGCAAGCCCTTCTGTCCTATGACAATATGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCATATGCATCTTGCACTCCCCACACATCATACAGgtgagcatttggttaaactggtgtcttagggttgggtcaactgtcatggt Alignment from Exonerate_coding2genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgagcacactgaaaatcatgtattttttaaacacaccttccctttgcagCTCCTAAGGAAACGTCACATCAGTAATGACATTGTGACCATTGTGTTTCAAGAGCCTGGCAGCAAGCCCTTCTGTCCTATGACAATATGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCATATGCATCTTGCACTCCCCACACATCATACAGgtgagcatttggttaaactggtgtcttagggttgggtcaactgtcatggt Alignment from GeneWise CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgagcacactgaaaatcatgtattttttaaacacaccttccctttgcagCTCCTAAGGAAACGTCACATCAGTAATGACATTGTGACCATTGTGTTTCAAGAGCCTGGCAGCAAGCCCTTCTGTCCTATGACAATATGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCATATGCATCTTGCACTCCCCACACATCATACAGgtgagcatttggttaaactggtgtcttagggttgggtcaactgtcatggt #### Slc15a3_ID3030_5 --> 0 - 1 Original Alignment ATCCCAGAAGCCTGGCTCCTACTGGCCAAT---GTTGCGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGAT---CCTCTGCTGCTGCGGTGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACCTCCATCATTGTGGCAg ggggggatgatgtgggcttcctcctgtgtgccatctcttgtttctttcagGTCCCAGATGCGTGGCTTCTATCGGCTAATGTAGTAGCTGTGATCCTGATACTTATCCCTGTGAAGGAGCACCTGATAGATACTCCTCTGGTGCTGAGGTGCAAACTACTGCCATCATCTCTACAAAAAGCAGCCCTAGGCATGTTTTTTGGTTTCGTCTCCATCATTGTTGCAggtgcgtggtataatttgtacatccaccatgcaccagggcccaagttatca Alignment from CESAR ATCCCAGAAGCCTGGCTCCTACTGGCCAAT---GTTGCGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGAT---CCTCTGCTGCTGCGGTGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACCTCCATCATTGTGGCAg ggggggatgatgtgggcttcctcctgtgtgccatctcttgtttctttcagGTCCCAGATGCGTGGCTTCTATCGGCTAATGTAGTAGCTGTGATCCTGATACTTATCCCTGTGAAGGAGCACCTGATAGATACTCCTCTGGTGCTGAGGTGCAAACTACTGCCATCATCTCTACAAAAAGCAGCCCTAGGCATGTTTTTTGGTTTCGTCTCCATCATTGTTGCAggtgcgtggtataatttgtacatccaccatgcaccagggcccaagttatca Alignment from Spaln_aa2Genome ATCCCAGAAGCCTGGCTCCTACTGGCCAAT---GTTGCGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGAT---CCTCTGCTGCTGCGGTGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACCTCCATCATTGTGGCAG ggggggatgatgtgggcttcctcctgtgtgccatctcttgtttctttcagGTCCCAGATGCGTGGCTTCTATCGGCTAATGTAGTAGCTGTGATCCTGATACTTATCCCTGTGAAGGAGCACCTGATAGATACTCCTCTGGTGCTGAGGTGCAAACTACTGCCATCATCTCTACAAAAAGCAGCCCTAGGCATGTTTTTTGGTTTCGTCTCCATCATTGTTGCAGgtgcgtggtataatttgtacatccaccatgcaccagggcccaagttatca Alignment from Spaln_nt2Genome ATCCCAGAAGCCTGGCTCCTACTGGCCAATGTTG---CGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGAT---CCTCTGCTGCTGCGGTGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACCTCCATCATTGTGGCAG ggggggatgatgtgggcttcctcctgtgtgccatctcttgtttctttcagGTCCCAGATGCGTGGCTTCTATCGGCTAATGTAGTAGCTGTGATCCTGATACTTATCCCTGTGAAGGAGCACCTGATAGATACTCCTCTGGTGCTGAGGTGCAAACTACTGCCATCATCTCTACAAAAAGCAGCCCTAGGCATGTTTTTTGGTTTCGTCTCCATCATTGTTGCAGgtgcgtggtataatttgtacatccaccatgcaccagggcccaagttatca Alignment from Pairagon ATCCCAGAAGCCTGGCTCCTACTGGCCAAT---GTTGCGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGA---TCCTCTGCTGCTGCGGTGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACCTCCATCATTGTGGCAG ggggggatgatgtgggcttcctcctgtgtgccatctcttgtttctttcagGTCCCAGATGCGTGGCTTCTATCGGCTAATGTAGTAGCTGTGATCCTGATACTTATCCCTGTGAAGGAGCACCTGATAGATACTCCTCTGGTGCTGAGGTGCAAACTACTGCCATCATCTCTACAAAAAGCAGCCCTAGGCATGTTTTTTGGTTTCGTCTCCATCATTGTTGCAGgtgcgtggtataatttgtacatccaccatgcaccagggcccaagttatca Alignment from Exonerate_protein2genome ATCCCAGAAGCCTGGCTCCTACTGGCCAAT---GTTGCGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGAT---CCTCTGCTGCTGCGGTGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACCTCCATCATTGTGGCAG ggggggatgatgtgggcttcctcctgtgtgccatctcttgtttctttcagGTCCCAGATGCGTGGCTTCTATCGGCTAATGTAGTAGCTGTGATCCTGATACTTATCCCTGTGAAGGAGCACCTGATAGATACTCCTCTGGTGCTGAGGTGCAAACTACTGCCATCATCTCTACAAAAAGCAGCCCTAGGCATGTTTTTTGGTTTCGTCTCCATCATTGTTGCAGgtgcgtggtataatttgtacatccaccatgcaccagggcccaagttatca Alignment from Exonerate_coding2genome ATCCCAGAAGCCTGGCTCCTACTGGCCAAT---GTTGCGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGAT---CCTCTGCTGCTGCGGTGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACCTCCATCATTGTGGCAG ggggggatgatgtgggcttcctcctgtgtgccatctcttgtttctttcagGTCCCAGATGCGTGGCTTCTATCGGCTAATGTAGTAGCTGTGATCCTGATACTTATCCCTGTGAAGGAGCACCTGATAGATACTCCTCTGGTGCTGAGGTGCAAACTACTGCCATCATCTCTACAAAAAGCAGCCCTAGGCATGTTTTTTGGTTTCGTCTCCATCATTGTTGCAGgtgcgtggtataatttgtacatccaccatgcaccagggcccaagttatca Alignment from GeneWise ATCCCAGAAGCCTGGCTCCTACTGGCCAAT---GTTGCGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGAT---CCTCTGCTGCTGCGGTGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACCTCCATCATTGTGGCAG ggggggatgatgtgggcttcctcctgtgtgccatctcttgtttctttcagGTCCCAGATGCGTGGCTTCTATCGGCTAATGTAGTAGCTGTGATCCTGATACTTATCCCTGTGAAGGAGCACCTGATAGATACTCCTCTGGTGCTGAGGTGCAAACTACTGCCATCATCTCTACAAAAAGCAGCCCTAGGCATGTTTTTTGGTTTCGTCTCCATCATTGTTGCAGgtgcgtggtataatttgtacatccaccatgcaccagggcccaagttatca #### Slc16a12_ID6974_4 --> 2 - 2 Original Alignment gtCTTGGATTTGCACTTTGTTACTCTCCGGCAATTGCCATGGTGGGCAAGTATTTCAGCAGACGGAAAGCCCTGGCTTATGGGATTGCCATGTCAGGCAGTGGCATTGGTACCTTCATCCTGGCTCCTGTCGTTCAGCTCCTCATCGAACAGTTTTCCTGGCGAGGAGCACTGCTCATTCTTGGCGGGTTCGTTCTGAATCTCTGCGTCTGCGGCGCT------------------------CTGATGCGTCCAATTACCCTTAAAGAGGACCGATCAGTCCCAGAAAAGAATCACAACCGTGAATCTCAGCGAGAAGACTGTAAGCAAGCATCTCCCTATTCACCTTTGACCAAAGAATGTACAGAGACCCGTCTTTGCTGCTCCTTGCAGCAGGAATACGGTTTTTTACTGATGTCAGACTTCGTCGTGTTGGCCGTCTCTGTTCTGTTCATGGCCTACGGCTGCAGCCCTCTCTTTGTGTACCTAGTGCCTTATGCTTTGAGTGTCGGAGTGAGCCACCATCAAGCTGCTTTCCTCATGTCCATCCTCGGGGTAATCGATATTGTTGGCAATATCACATTTGGCTGGCTAACTGACAGAag tcctacccacttcacattgaattagcataaaatattatatatttttataggaCTTGGATTTGCCCTTTGTTACTCTCCAACAATTGCTATGGTGGGTAAGTATTTCAGCAAACGGAAAGTTCTGACTTACGGCATTGCCATGGCAGGCAGTGGCATTGGTACCTTCATTCTAGCG------------CTCCTAATAGAACAATTTTCCTGGCACGGGGCACTTCTTGTTCTTGGCGGGGCGATTCTAAATCTCTGTGTCTGTGGTGTCTTGATGCATCCAATTAGTCTTAAATTGATGCATCCAATTAGCCTTAAAGAAGACCGCTCAATTCCAGAACGGAATCACAATCGTGAATCTCAACAGGAAGACTGTAAACAAGCATCTCCC---TCACAATTGACCAAAGAGTGTACAGAGACCTGCCTCAGTTGCCCCTTGCAGCAGGAATATGGTTTTTTATTGATGTCAGACTTTGTTGTGTTGTCCGTCTCTGCTCTATTCATGTCCTACGGTTGCAGCCCTCTCTCTGTGTACCTAGCGTCATATGCATTT------GGAGTAAGTCACCTTCAGGCTGTCTTCCTCATGTCCATCCTCGGAATAACTGATGTAGTTGGCAACATAACATTTGGCTGGCTAACTGATAGAaggtaagtctcttggggtaaactgtataatccatatagaatctcttcttcct Alignment from CESAR gtCTTGGATTTGCACTTTGTTACTCTCCGGCAATTGCCATGGTGGGCAAGTATTTCAGCAGACGGAAAGCCCTGGCTTATGGGATTGCCATGTCAGGCAGTGGCATTGGTACCTTCATCCTGGCTCCTGTCGTTCAGCTCCTCATCGAACAGTTTTCCTGGCGAGGAGCACTGCTCATTCTTGGCGGGTTCGTTCTGAATCTCTGCGTCTGCGGCGCTCTGATGCGTCCAATT------------------------ACCCTTAAAGAGGACCGATCAGTCCCAGAAAAGAATCACAACCGTGAATCTCAGCGAGAAGACTGTAAGCAAGCATCTCCCTATTCACCTTTGACCAAAGAATGTACAGAGACCCGTCTTTGCTGCTCCTTGCAGCAGGAATACGGTTTTTTACTGATGTCAGACTTCGTCGTGTTGGCCGTCTCTGTTCTGTTCATGGCCTACGGCTGCAGCCCTCTCTTTGTGTACCTAGTGCCTTATGCTTTGAGTGTCGGAGTGAGCCACCATCAAGCTGCTTTCCTCATGTCCATCCTCGGGGTAATCGATATTGTTGGCAATATCACATTTGGCTGGCTAACTGACAGAag tcctacccacttcacattgaattagcataaaatattatatatttttataggaCTTGGATTTGCCCTTTGTTACTCTCCAACAATTGCTATGGTGGGTAAGTATTTCAGCAAACGGAAAGTTCTGACTTACGGCATTGCCATGGCAGGCAGTGGCATTGGTACCTTCATTCTAGCG------------CTCCTAATAGAACAATTTTCCTGGCACGGGGCACTTCTTGTTCTTGGCGGGGCGATTCTAAATCTCTGTGTCTGTGGTGTCTTGATGCATCCAATTAGTCTTAAATTGATGCATCCAATTAGCCTTAAAGAAGACCGCTCAATTCCAGAACGGAATCACAATCGTGAATCTCAACAGGAAGACTGTAAACAAGCATCTCCC---TCACAATTGACCAAAGAGTGTACAGAGACCTGCCTCAGTTGCCCCTTGCAGCAGGAATATGGTTTTTTATTGATGTCAGACTTTGTTGTGTTGTCCGTCTCTGCTCTATTCATGTCCTACGGTTGCAGCCCTCTCTCTGTGTACCTAGCGTCATATGCATTT------GGAGTAAGTCACCTTCAGGCTGTCTTCCTCATGTCCATCCTCGGAATAACTGATGTAGTTGGCAACATAACATTTGGCTGGCTAACTGATAGAaggtaagtctcttggggtaaactgtataatccatatagaatctcttcttcct Alignment from Spaln_aa2Genome GTCTTGGATTTGCACTTTGTTACTCTCCGGCAATTGCCATGGTGGGCAAGTATTTCAGCAGACGGAAAGCCCTGGCTTATGGGATTGCCATGTCAGGCAGTGGCATTGGTACCTTCATCCTGGCTCCTGTCGTTCAGCTCCTCATCGAACAGTTTTCCTGGCGAGGAGCACTGCTCATTCTTGGCGGGTTCGTTCTGAATCTCTGCGTCTGCGGCGCT------------------------CTGATGCGTCCAATTACCCTTAAAGAGGACCGATCAGTCCCAGAAAAGAATCACAACCGTGAATCTCAGCGAGAAGACTGTAAGCAAGCATCTCCCTATTCACCTTTGACCAAAGAATGTACAGAGACCCGTCTTTGCTGCTCCTTGCAGCAGGAATACGGTTTTTTACTGATGTCAGACTTCGTCGTGTTGGCCGTCTCTGTTCTGTTCATGGCCTACGGCTGCAGCCCTCTCTTTGTGTACCTAGTGCCTTATGCTTTGAGTGTCGGAGTGAGCCACCATCAAGCTGCTTTCCTCATGTCCATCCTCGGGGTAATCGATATTGTTGGCAATATCACATTTGGCTGGCTAACTGACAGAAG tcctacccacttcacattgaattagcataaaatattatatatttttatagGACTTGGATTTGCCCTTTGTTACTCTCCAACAATTGCTATGGTGGGTAAGTATTTCAGCAAACGGAAAGTTCTGACTTACGGCATTGCCATGGCAGGCAGTGGCATTGGTACCTTCATTCTAGCG------------CTCCTAATAGAACAATTTTCCTGGCACGGGGCACTTCTTGTTCTTGGCGGGGCGATTCTAAATCTCTGTGTCTGTGGTGTCTTGATGCATCCAATTAGTCTTAAATTGATGCATCCAATTAGCCTTAAAGAAGACCGCTCAATTCCAGAACGGAATCACAATCGTGAATCTCAACAGGAAGACTGTAAACAAGCATCTCCC---TCACAATTGACCAAAGAGTGTACAGAGACCTGCCTCAGTTGCCCCTTGCAGCAGGAATATGGTTTTTTATTGATGTCAGACTTTGTTGTGTTGTCCGTCTCTGCTCTATTCATGTCCTACGGTTGCAGCCCTCTCTCTGTGTACCTAGCGTCATATGCATTT------GGAGTAAGTCACCTTCAGGCTGTCTTCCTCATGTCCATCCTCGGAATAACTGATGTAGTTGGCAACATAACATTTGGCTGGCTAACTGATAGAAGgtaagtctcttggggtaaactgtataatccatatagaatctcttcttcct Alignment from Spaln_nt2Genome GTCTTGGATTTGCACTTTGTTACTCTCCGGCAATTGCCATGGTGGGCAAGTATTTCAGCAGACGGAAAGCCCTGGCTTATGGGATTGCCATGTCAGGCAGTGGCATTGGTACCTTCATCCTGGCTCCTGTCGTTCAGCTCCTCATCGAACAGTTTTCCTGGCGAGGAGCACTGCTCATTCTTGGCGGGTTCGTTCTGAATCTCTGCGTCTGCGGCGC------------------TCT------GATGCGTCCAATTACCCTTAAAGAGGACCGATCAGTCCCAGAAAAGAATCACAACCGTGAATCTCAGCGAGAAGACTGTAAGCAAGCATCTCCCTATTCACCTTTGACCAAAGAATGTACAGAGACCCGTCTTTGCTGCTCCTTGCAGCAGGAATACGGTTTTTTACTGATGTCAGACTTCGTCGTGTTGGCCGTCTCTGTTCTGTTCATGGCCTACGGCTGCAGCCCTCTCTTTGTGTACCTAGTGCCTTATGCTTTGAGTGTCGGAGTGAGCCACCATCAAGCTGCTTTCCTCATGTCCATCCTCGGGGTAATCGATATTGTTGGCAATATCACATTTGGCTGGCTAACTGACAGAAG tcctacccacttcacattgaattagcataaaatattatatatttttatagGACTTGGATTTGCCCTTTGTTACTCTCCAACAATTGCTATGGTGGGTAAGTATTTCAGCAAACGGAAAGTTCTGACTTACGGCATTGCCATGGCAGGCAGTGGCATTGGTACCTTCATTCTAGC------------GCTCCTAATAGAACAATTTTCCTGGCACGGGGCACTTCTTGTTCTTGGCGGGGCGATTCTAAATCTCTGTGTCTGTGGTGTCTTGATGCATCCAATTAGTCTTAAATTGATGCATCCAATTAGCCTTAAAGAAGACCGCTCAATTCCAGAACGGAATCACAATCGTGAATCTCAACAGGAAGACTGTAAACAAGCATCTCCC---TCACAATTGACCAAAGAGTGTACAGAGACCTGCCTCAGTTGCCCCTTGCAGCAGGAATATGGTTTTTTATTGATGTCAGACTTTGTTGTGTTGTCCGTCTCTGCTCTATTCATGTCCTACGGTTGCAGCCCTCTCTCTGTGTACCTAGCGTCATATGCAT------TTGGAGTAAGTCACCTTCAGGCTGTCTTCCTCATGTCCATCCTCGGAATAACTGATGTAGTTGGCAACATAACATTTGGCTGGCTAACTGATAGAAGgtaagtctcttggggtaaactgtataatccatatagaatctcttcttcct Alignment from Pairagon GTCTTGGATTTGCACTTTGTTACTCTCCGGCAATTGCCATGGTGGGCAAGTATTTCAGCAGACGGAAAGCCCTGGCTTATGGGATTGCCATGTCAGGCAGTGGCATTGGTACCTTCATCCTGGCTCCTGTCGTTCAGCTCCTCATCGAACAGTTTTCCTGGCGAGGAGCACTGCTCATTCTTGGCGGGTTCGTTCTGAATCTCTGCGTCTGCGGCGCT------------------------CTGATGCGTCCAATTACCCTTAAAGAGGACCGATCAGTCCCAGAAAAGAATCACAACCGTGAATCTCAGCGAGAAGACTGTAAGCAAGCATCTCCCTATTCACCTTTGACCAAAGAATGTACAGAGACCCGTCTTTGCTGCTCCTTGCAGCAGGAATACGGTTTTTTACTGATGTCAGACTTCGTCGTGTTGGCCGTCTCTGTTCTGTTCATGGCCTACGGCTGCAGCCCTCTCTTTGTGTACCTAGTGCCTTATGCTTTGAGTGTCGGAGTGAGCCACCATCAAGCTGCTTTCCTCATGTCCATCCTCGGGGTAATCGATATTGTTGGCAATATCACATTTGGCTGGCTAACTGACAGAAG tcctacccacttcacattgaattagcataaaatattatatatttttatagGACTTGGATTTGCCCTTTGTTACTCTCCAACAATTGCTATGGTGGGTAAGTATTTCAGCAAACGGAAAGTTCTGACTTACGGCATTGCCATGGCAGGCAGTGGCATTGGTACCTTCATTCTAGC------------GCTCCTAATAGAACAATTTTCCTGGCACGGGGCACTTCTTGTTCTTGGCGGGGCGATTCTAAATCTCTGTGTCTGTGGTGTCTTGATGCATCCAATTAGTCTTAAATTGATGCATCCAATTAGCCTTAAAGAAGACCGCTCAATTCCAGAACGGAATCACAATCGTGAATCTCAACAGGAAGACTGTAAACAAGCATCTCCC---TCACAATTGACCAAAGAGTGTACAGAGACCTGCCTCAGTTGCCCCTTGCAGCAGGAATATGGTTTTTTATTGATGTCAGACTTTGTTGTGTTGTCCGTCTCTGCTCTATTCATGTCCTACGGTTGCAGCCCTCTCTCTGTGTACCTAGCGTCATATGCAT------TTGGAGTAAGTCACCTTCAGGCTGTCTTCCTCATGTCCATCCTCGGAATAACTGATGTAGTTGGCAACATAACATTTGGCTGGCTAACTGATAGAAGgtaagtctcttggggtaaactgtataatccatatagaatctcttcttcct Alignment from Exonerate_protein2genome CTGATGCGTCCAATTACCCTTAAAGAGGACCGATCAGTCCCAGAAAAGAATCACAACCGTGAATCTCAGCGAGAAGACTGTAAGCAAGCATCTCCCTATTCACCTTTGACCAAAGAATGTACAGAGACCCGTCTTTGCTGCTCCTTGCAGCAGGAATACGGTTTTTTACTGATGTCAGACTTCGTCGTGTTGGCCGTCTCTGTTCTGTTCATGGCCTACGGCTGCAGCCCTCTCTTTGTGTACCTAGTGCCTTATGCTTTGAGTGTCGGAGTGAGCCACCATCAAGCTGCTTTCCTCATGTCCATCCTCGGGGTAATCGATATTGTTGGCAATATCACATTTGGCTGGCTAACTGACAGAAG tcctacccacttcacattgaattagcataaaatattatatatttttataggacttggatttgccctttgttactctccaacaattgctatggtgggtaagtatttcagcaaacggaaagttctgacttacggcattgccatggcaggcagtggcattggtaccttcattctagcgctcctaatagaacaattttcctggcacggggcacttcttgttcttggcggggcgattctaaatctctgtgtctgtggtgtcttgatgcatccaattagtcttaaaTTGATGCATCCAATTAGCCTTAAAGAAGACCGCTCAATTCCAGAACGGAATCACAATCGTGAATCTCAACAGGAAGACTGTAAACAAGCATCTCCC---TCACAATTGACCAAAGAGTGTACAGAGACCTGCCTCAGTTGCCCCTTGCAGCAGGAATATGGTTTTTTATTGATGTCAGACTTTGTTGTGTTGTCCGTCTCTGCTCTATTCATGTCCTACGGTTGCAGCCCTCTCTCTGTGTACCTAGCGTCATATGCATTT------GGAGTAAGTCACCTTCAGGCTGTCTTCCTCATGTCCATCCTCGGAATAACTGATGTAGTTGGCAACATAACATTTGGCTGGCTAACTGATAGAAGgtaagtctcttggggtaaactgtataatccatatagaatctcttcttcct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTCTTGGATTTGCACTTTGTTACTCTCCGGCAATTGCCATGGTGGGCAAGTATTTCAGCAGACGGAAAGCCCTGGCTTATGGGATTGCCATGTCAGGCAGTGGCATTGGTACCTTCATCCTGGCTCCTGTCGTTCAGCTCCTCATCGAACAGTTTTCCTGGCGAGGAGCACTGCTCATTCTTGGCGGGTTCGTTCTGAATCTCTGCGTCTGCGGCGCTCTGATGCGTCCAATT------------------------ACCCTTAAAGAGGACCGATCAGTCCCAGAAAAGAATCACAACCGTGAATCTCAGCGAGAAGACTGTAAGCAAGCATCTCCCTATTCACCTTTGACCAAAGAATGTACAGAGACCCGTCTTTGCTGCTCCTTGCAGCAGGAATACGGTTTTTTACTGATGTCAGACTTCGTCGTGTTGGCCGTCTCTGTTCTGTTCATGGCCTACGGCTGCAGCCCTCTCTTTGTGTACCTAGTGCCTTATGCTTTGAGTGTCGGAGTGAGCCACCATCAAGCTGCTTTCCTCATGTCCATCCTCGGGGTAATCGATATTGTTGGCAATATCACATTTGGCTGGCTAACTGACAGAAG tcctacccacttcacattgaattagcataaaatattatatatttttatagGACTTGGATTTGCCCTTTGTTACTCTCCAACAATTGCTATGGTGGGTAAGTATTTCAGCAAACGGAAAGTTCTGACTTACGGCATTGCCATGGCAGGCAGTGGCATTGGTACCTTCATTCTAGCG------------CTCCTAATAGAACAATTTTCCTGGCACGGGGCACTTCTTGTTCTTGGCGGGGCGATTCTAAATCTCTGTGTCTGTGGTGTCTTGATGCATCCAATTAGTCTTAAATTGATGCATCCAATTAGCCTTAAAGAAGACCGCTCAATTCCAGAACGGAATCACAATCGTGAATCTCAACAGGAAGACTGTAAACAAGCATCTCCC---TCACAATTGACCAAAGAGTGTACAGAGACCTGCCTCAGTTGCCCCTTGCAGCAGGAATATGGTTTTTTATTGATGTCAGACTTTGTTGTGTTGTCCGTCTCTGCTCTATTCATGTCCTACGGTTGCAGCCCTCTCTCTGTGTACCTAGCGTCATATGCATTT------GGAGTAAGTCACCTTCAGGCTGTCTTCCTCATGTCCATCCTCGGAATAACTGATGTAGTTGGCAACATAACATTTGGCTGGCTAACTGATAGAAGgtaagtctcttggggtaaactgtataatccatatagaatctcttcttcct #### Slc18a2_ID12931_2 --> 2 - 2 Original Alignment ttCCCATCATTCCCAGCTACCTGTACAGCATTAAGCACGAGAAAAATACTACGGAAATCCAGACTGCCAGGCCAGCGCTCACAGCCTCCACTTCCGAAAGCTTCCACAGCATCTTCTCTTACTATAACAACTCTACTGTGTTCACGGGGAATGCCACGGGGGGCCTCCCAGGAGGGGAGTCACCCAAGGCTACCACCACACAGCACACTGTGACCAACACGACTGTCCCTCCCGACTGCCCCAGTGAAGACAAAGACCTTCTAAATGAGAATGTGCAAGTTGGGCTGCTGTTTGCCTCCAAAGCCACTGTCCAGCTCCTCACCAACCCATTCATAGGACTTCTAACCAACag ttgctctggggaatgctgttgagcgtttcatgttgctgccacaaatgaagtgCCCATTATTCCCAGTTACCTGTACAGCATTAAGCATGACGAAAACACTATGGAAAACCAGATTGCTAGGCCAGCACTCACAGCCTCCACTTCTGAAAGCTTCCACAGCATTTGCTCATACTACAACAACTCA---GTGTTCACAGGAAATGCCACTGGAGGCCTTCCAGGGGGGGAGTCCTCTAAGGCAACCACTACACATCACAGTGTGACCAACACTACCGTCCCTCCAGATTGTGCAAGTGAAGAGAAAGATCTTCTTAATGAGAAGGTACAAGTTGGGTTGCTGTTTGCCTCCAAAGCCACTGTTCAACTCCTTACTAACCCATTCCTAGGGATTCTCAGCAACaagtaagttgatggtgatagatgtattggaatcctgttcgctctacttttgg Alignment from CESAR ttCCCATCATTCCCAGCTACCTGTACAGCATTAAGCACGAGAAAAATACTACGGAAATCCAGACTGCCAGGCCAGCGCTCACAGCCTCCACTTCCGAAAGCTTCCACAGCATCTTCTCTTACTATAACAACTCTACTGTGTTCACGGGGAATGCCACGGGGGGCCTCCCAGGAGGGGAGTCACCCAAGGCTACCACCACACAGCACACTGTGACCAACACGACTGTCCCTCCCGACTGCCCCAGTGAAGACAAAGACCTTCTAAATGAGAATGTGCAAGTTGGGCTGCTGTTTGCCTCCAAAGCCACTGTCCAGCTCCTCACCAACCCATTCATAGGACTTCTAACCAACag ttgctctggggaatgctgttgagcgtttcatgttgctgccacaaatgaagtgCCCATTATTCCCAGTTACCTGTACAGCATTAAGCATGACGAAAACACTATGGAAAACCAGATTGCTAGGCCAGCACTCACAGCCTCCACTTCTGAAAGCTTCCACAGCATTTGCTCATACTACAACAACTCA---GTGTTCACAGGAAATGCCACTGGAGGCCTTCCAGGGGGGGAGTCCTCTAAGGCAACCACTACACATCACAGTGTGACCAACACTACCGTCCCTCCAGATTGTGCAAGTGAAGAGAAAGATCTTCTTAATGAGAAGGTACAAGTTGGGTTGCTGTTTGCCTCCAAAGCCACTGTTCAACTCCTTACTAACCCATTCCTAGGGATTCTCAGCAACaagtaagttgatggtgatagatgtattggaatcctgttcgctctacttttgg Alignment from Spaln_aa2Genome TTCCCATCATTCCCAGCTACCTGTACAGCATTAAGCACGAGAAAAATACTACGGAAATCCAGACTGCCAGGCCAGCGCTCACAGCCTCCACTTCCGAAAGCTTCCACAGCATCTTCTCTTACTATAACAACTCTACTGTGTTCACGGGGAATGCCACGGGGGGCCTCCCAGGAGGGGAGTCACCCAAGGCTACCACCACACAGCACACTGTGACCAACACGACTGTCCCTCCCGACTGCCCCAGTGAAGACAAAGACCTTCTAAATGAGAATGTGCAAGTTGGGCTGCTGTTTGCCTCCAAAGCCACTGTCCAGCTCCTCACCAACCCATTCATAGGACTTCTAACCAACAG ttgctctggggaatgctgttgagcgtttcatgttgctgccacaaatgaagTGCCCATTATTCCCAGTTACCTGTACAGCATTAAGCATGACGAAAACACTATGGAAAACCAGATTGCTAGGCCAGCACTCACAGCCTCCACTTCTGAAAGCTTCCACAGCATTTGCTCATACTACAACAAC---TCAGTGTTCACAGGAAATGCCACTGGAGGCCTTCCAGGGGGGGAGTCCTCTAAGGCAACCACTACACATCACAGTGTGACCAACACTACCGTCCCTCCAGATTGTGCAAGTGAAGAGAAAGATCTTCTTAATGAGAAGGTACAAGTTGGGTTGCTGTTTGCCTCCAAAGCCACTGTTCAACTCCTTACTAACCCATTCCTAGGGATTCTCAGCAACAAgtaagttgatggtgatagatgtattggaatcctgttcgctctacttttgg Alignment from Spaln_nt2Genome TTCCCATCATTCCCAGCTACCTGTACAGCATTAAGCACGAGAAAAATACTACGGAAATCCAGACTGCCAGGCCAGCGCTCACAGCCTCCACTTCCGAAAGCTTCCACAGCATCTTCTCTTACTATAACAACTCTACTGTGTTCACGGGGAATGCCACGGGGGGCCTCCCAGGAGGGGAGTCACCCAAGGCTACCACCACACAGCACACTGTGACCAACACGACTGTCCCTCCCGACTGCCCCAGTGAAGACAAAGACCTTCTAAATGAGAATGTGCAAGTTGGGCTGCTGTTTGCCTCCAAAGCCACTGTCCAGCTCCTCACCAACCCATTCATAGGACTTCTAACCAACAG ttgctctggggaatgctgttgagcgtttcatgttgctgccacaaatgaagTGCCCATTATTCCCAGTTACCTGTACAGCATTAAGCATGACGAAAACACTATGGAAAACCAGATTGCTAGGCCAGCACTCACAGCCTCCACTTCTGAAAGCTTCCACAGCATTTGCTCATACTACAACAACT---CAGTGTTCACAGGAAATGCCACTGGAGGCCTTCCAGGGGGGGAGTCCTCTAAGGCAACCACTACACATCACAGTGTGACCAACACTACCGTCCCTCCAGATTGTGCAAGTGAAGAGAAAGATCTTCTTAATGAGAAGGTACAAGTTGGGTTGCTGTTTGCCTCCAAAGCCACTGTTCAACTCCTTACTAACCCATTCCTAGGGATTCTCAGCAACAAgtaagttgatggtgatagatgtattggaatcctgttcgctctacttttgg Alignment from Pairagon TTCCCATCATTCCCAGCTACCTGTACAGCATTAAGCACGAGAAAAATACTACGGAAATCCAGACTGCCAGGCCAGCGCTCACAGCCTCCACTTCCGAAAGCTTCCACAGCATCTTCTCTTACTATAACAACTCTACTGTGTTCACGGGGAATGCCACGGGGGGCCTCCCAGGAGGGGAGTCACCCAAGGCTACCACCACACAGCACACTGTGACCAACACGACTGTCCCTCCCGACTGCCCCAGTGAAGACAAAGACCTTCTAAATGAGAATGTGCAAGTTGGGCTGCTGTTTGCCTCCAAAGCCACTGTCCAGCTCCTCACCAACCCATTCATAGGACTTCTAACCAACAG ttgctctggggaatgctgttgagcgtttcatgttgctgccacaaatgaagTGCCCATTATTCCCAGTTACCTGTACAGCATTAAGCATGACGAAAACACTATGGAAAACCAGATTGCTAGGCCAGCACTCACAGCCTCCACTTCTGAAAGCTTCCACAGCATTTGCTCATACTACAACAACT---CAGTGTTCACAGGAAATGCCACTGGAGGCCTTCCAGGGGGGGAGTCCTCTAAGGCAACCACTACACATCACAGTGTGACCAACACTACCGTCCCTCCAGATTGTGCAAGTGAAGAGAAAGATCTTCTTAATGAGAAGGTACAAGTTGGGTTGCTGTTTGCCTCCAAAGCCACTGTTCAACTCCTTACTAACCCATTCCTAGGGATTCTCAGCAACAAgtaagttgatggtgatagatgtattggaatcctgttcgctctacttttgg Alignment from Exonerate_protein2genome TTCCCATCATTCCCAGCTACCTGTACAGCATTAAGCACGAGAAAAATACTACGGAAATCCAGACTGCCAGGCCAGCGCTCACAGCCTCCACTTCCGAAAGCTTCCACAGCATCTTCTCTTACTATAACAACTCTACTGTGTTCACGGGGAATGCCACGGGGGGCCTCCCAGGAGGGGAGTCACCCAAGGCTACCACCACACAGCACACTGTGACCAACACGACTGTCCCTCCCGACTGCCCCAGTGAAGACAAAGACCTTCTAAATGAGAATGTGCAAGTTGGGCTGCTGTTTGCCTCCAAAGCCACTGTCCAGCTCCTCACCAACCCATTCATAGGACTTCTAACCAACAG ttgctctggggaatgctgttgagcgtttcatgttgctgccacaaatgaagTGCCCATTATTCCCAGTTACCTGTACAGCATTAAGCATGACGAAAACACTATGGAAAACCAGATTGCTAGGCCAGCACTCACAGCCTCCACTTCTGAAAGCTTCCACAGCATTTGCTCATACTACAACAACTCA---GTGTTCACAGGAAATGCCACTGGAGGCCTTCCAGGGGGGGAGTCCTCTAAGGCAACCACTACACATCACAGTGTGACCAACACTACCGTCCCTCCAGATTGTGCAAGTGAAGAGAAAGATCTTCTTAATGAGAAGGTACAAGTTGGGTTGCTGTTTGCCTCCAAAGCCACTGTTCAACTCCTTACTAACCCATTCCTAGGGATTCTCAGCAACAAgtaagttgatggtgatagatgtattggaatcctgttcgctctacttttgg Alignment from Exonerate_coding2genome TTCCCATCATTCCCAGCTACCTGTACAGCATTAAGCACGAGAAAAATACTACGGAAATCCAGACTGCCAGGCCAGCGCTCACAGCCTCCACTTCCGAAAGCTTCCACAGCATCTTCTCTTACTATAACAACTCTACTGTGTTCACGGGGAATGCCACGGGGGGCCTCCCAGGAGGGGAGTCACCCAAGGCTACCACCACACAGCACACTGTGACCAACACGACTGTCCCTCCCGACTGCCCCAGTGAAGACAAAGACCTTCTAAATGAGAATGTGCAAGTTGGGCTGCTGTTTGCCTCCAAAGCCACTGTCCAGCTCCTCACCAACCCATTCATAGGACTTCTAACCAACAG ttgctctggggaatgctgttgagcgtttcatgttgctgccacaaatgaagTGCCCATTATTCCCAGTTACCTGTACAGCATTAAGCATGACGAAAACACTATGGAAAACCAGATTGCTAGGCCAGCACTCACAGCCTCCACTTCTGAAAGCTTCCACAGCATTTGCTCATACTACAACAACTCA---GTGTTCACAGGAAATGCCACTGGAGGCCTTCCAGGGGGGGAGTCCTCTAAGGCAACCACTACACATCACAGTGTGACCAACACTACCGTCCCTCCAGATTGTGCAAGTGAAGAGAAAGATCTTCTTAATGAGAAGGTACAAGTTGGGTTGCTGTTTGCCTCCAAAGCCACTGTTCAACTCCTTACTAACCCATTCCTAGGGATTCTCAGCAACAAgtaagttgatggtgatagatgtattggaatcctgttcgctctacttttgg Alignment from GeneWise TTCCCATCATTCCCAGCTACCTGTACAGCATTAAGCACGAGAAAAATACTACGGAAATCCAGACTGCCAGGCCAGCGCTCACAGCCTCCACTTCCGAAAGCTTCCACAGCATCTTCTCTTACTATAACAACTCTACTGTGTTCACGGGGAATGCCACGGGGGGCCTCCCAGGAGGGGAGTCACCCAAGGCTACCACCACACAGCACACTGTGACCAACACGACTGTCCCTCCCGACTGCCCCAGTGAAGACAAAGACCTTCTAAATGAGAATGTGCAAGTTGGGCTGCTGTTTGCCTCCAAAGCCACTGTCCAGCTCCTCACCAACCCATTCATAGGACTTCTAACCAACAG ttgctctggggaatgctgttgagcgtttcatgttgctgccacaaatgaagTGCCCATTATTCCCAGTTACCTGTACAGCATTAAGCATGACGAAAACACTATGGAAAACCAGATTGCTAGGCCAGCACTCACAGCCTCCACTTCTGAAAGCTTCCACAGCATTTGCTCATACTACAACAACTCA---GTGTTCACAGGAAATGCCACTGGAGGCCTTCCAGGGGGGGAGTCCTCTAAGGCAACCACTACACATCACAGTGTGACCAACACTACCGTCCCTCCAGATTGTGCAAGTGAAGAGAAAGATCTTCTTAATGAGAAGGTACAAGTTGGGTTGCTGTTTGCCTCCAAAGCCACTGTTCAACTCCTTACTAACCCATTCCTAGGGATTCTCAGCAACAAgtaagttgatggtgatagatgtattggaatcctgttcgctctacttttgg #### Slc18a2_ID12937_5 --> 2 - 1 Original Alignment ggATGGGCATGCTGGCCAGCGTGTACACAGATGATGAAGAGAGGGGTAACGCCATGGGGATTGCTCTGGGGGGCCTGGCCATGGGGGTCTTAg gtactcccttgatcatcaatgatttctgaaggtattattcttaatttcagggATGGGGATGTTAGCAAGCGTATACACAGATGATGAGGAGAGGGATAATGCGATGGGCATTGCGCTTGTGGGTTTGGCCATGGGAGTTTTGggtaggtgtgggaaagttgtggtgactgcattgggggtcctgggtgttagc Alignment from CESAR ggATGGGCATGCTGGCCAGCGTGTACACAGATGATGAAGAGAGGGGTAACGCCATGGGGATTGCTCTGGGGGGCCTGGCCATGGGGGTCTTAg gtactcccttgatcatcaatgatttctgaaggtattattcttaatttcagggATGGGGATGTTAGCAAGCGTATACACAGATGATGAGGAGAGGGATAATGCGATGGGCATTGCGCTTGTGGGTTTGGCCATGGGAGTTTTGggtaggtgtgggaaagttgtggtgactgcattgggggtcctgggtgttagc Alignment from Spaln_aa2Genome GGATGGGCATGCTGGCCAGCGTGTACACAGATGATGAAGAGAGGGGTAACGCCATGGGGATTGCTCTGGGGGGCCTGGCCATGGGGGTCTTAG gtactcccttgatcatcaatgatttctgaaggtattattcttaatttcagGGATGGGGATGTTAGCAAGCGTATACACAGATGATGAGGAGAGGGATAATGCGATGGGCATTGCGCTTGTGGGTTTGGCCATGGGAGTTTTGGgtaggtgtgggaaagttgtggtgactgcattgggggtcctgggtgttagc Alignment from Spaln_nt2Genome GGATGGGCATGCTGGCCAGCGTGTACACAGATGATGAAGAGAGGGGTAACGCCATGGGGATTGCTCTGGGGGGCCTGGCCATGGGGGTCTTAG gtactcccttgatcatcaatgatttctgaaggtattattcttaatttcagGGATGGGGATGTTAGCAAGCGTATACACAGATGATGAGGAGAGGGATAATGCGATGGGCATTGCGCTTGTGGGTTTGGCCATGGGAGTTTTGGgtaggtgtgggaaagttgtggtgactgcattgggggtcctgggtgttagc Alignment from Pairagon GGATGGGCATGCTGGCCAGCGTGTACACAGATGATGAAGAGAGGGGTAACGCCATGGGGATTGCTCTGGGGGGCCTGGCCATGGGGGTCTTAG gtactcccttgatcatcaatgatttctgaaggtattattcttaatttcagGGATGGGGATGTTAGCAAGCGTATACACAGATGATGAGGAGAGGGATAATGCGATGGGCATTGCGCTTGTGGGTTTGGCCATGGGAGTTTTGGgtaggtgtgggaaagttgtggtgactgcattgggggtcctgggtgttagc Alignment from Exonerate_protein2genome GGATGGGCATGCTGGCCAGCGTGTACACAGATGATGAAGAGAGGGGTAACGCCATGGGGATTGCTCTGGGGGGCCTGGCCATGGGGGTCTTAG gtactcccttgatcatcaatgatttctgaaggtattattcttaatttcagGGATGGGGATGTTAGCAAGCGTATACACAGATGATGAGGAGAGGGATAATGCGATGGGCATTGCGCTTGTGGGTTTGGCCATGGGAGTTTTGGgtaggtgtgggaaagttgtggtgactgcattgggggtcctgggtgttagc Alignment from Exonerate_coding2genome GGATGGGCATGCTGGCCAGCGTGTACACAGATGATGAAGAGAGGGGTAACGCCATGGGGATTGCTCTGGGGGGCCTGGCCATGGGGGTCTTAG gtactcccttgatcatcaatgatttctgaaggtattattcttaatttcagGGATGGGGATGTTAGCAAGCGTATACACAGATGATGAGGAGAGGGATAATGCGATGGGCATTGCGCTTGTGGGTTTGGCCATGGGAGTTTTGGgtaggtgtgggaaagttgtggtgactgcattgggggtcctgggtgttagc Alignment from GeneWise GGATGGGCATGCTGGCCAGCGTGTACACAGATGATGAAGAGAGGGGTAACGCCATGGGGATTGCTCTGGGGGGCCTGGCCATGGGGGTCTTAG gtactcccttgatcatcaatgatttctgaaggtattattcttaatttcagGGATGGGGATGTTAGCAAGCGTATACACAGATGATGAGGAGAGGGATAATGCGATGGGCATTGCGCTTGTGGGTTTGGCCATGGGAGTTTTGGgtaggtgtgggaaagttgtggtgactgcattgggggtcctgggtgttagc #### Slc18a2_ID12939_7 --> 2 - 0 Original Alignment ctATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA gccaagtatgggatgcctgcggtatatccttctctctgttgactctacagctATTCAACTCTTTGTAATTCAA---TCCTGCATACTTCCGGATgtacggagctgggaatttacagcacggttaaatttttcttttaaccttaa Alignment from CESAR ctATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA gccaagtatgggatgcctgcggtatatccttctctctgttgactctacagctATTCAACTCTTTGTAATTCAA---TCCTGCATACTTCCGGATgtacggagctgggaatttacagcacggttaaatttttcgttttgtctgac Alignment from Spaln_aa2Genome CTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA gccaagtatgggatgcctgcggtatatccttctctctgttgactctacagCTATTCAACTCTTTGTAATTCAA---TCCTGCATACTTCCGGATgtacggagctgggaatttacagcacggttaaatttttcttttaaccttaa Alignment from Spaln_nt2Genome CTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA gccaagtatgggatgcctgcggtatatccttctctctgttgactctacagCTATTCAACTCTTTGTAATTCA---ATCCTGCATACTTCCGGATgtacggagctgggaatttacagcacggttaaatttttcttttaaccttaa Alignment from Pairagon CTATTCAGCTCTTT gccaagtatgggatgcctgcggtatatccttctctctgttgactctacagCTATTCAACTCTTTgtaattcaatcctgcatacttccggatgtacggagctgggaatttacagcacggttaaatttttcttttaaccttaa Alignment from Exonerate_protein2genome CTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA gccaagtatgggatgcctgcggtatatccttctctctgttgactctacagCTATTCAACTCTTTGTAATTCAA---TCCTGCATACTTCCGGATgtacggagctgggaatttacagcacggttaaatttttcttttaaccttaa Alignment from Exonerate_coding2genome AGT gccaagtatgggatgcctgcggtatatccttctctctgttgactctacagctattcaactctttgtaattcaatcctgcatacttccggatgtacggagctgggaatttacagcacggttaaatttttcttttaacctTAA Alignment from GeneWise CTATTCAGCTCTTTGTGCTCCAGCCATC gccaagtatgggatgcctgcggtatatccttctctctgttgactctacagctattcaactctttgtaattcaatcctgcatacttccggatgtacggagctgggaatttacagCACGGTTAAATTTTTCTTTTAACCTTAA #### Slc1a1_ID6165_4 --> 2 - 2 Original Alignment gtATTGTGTTAGTTGTGAGTATCAAGCCTGGTGTCACTCAGAAAGTGAATGACATCAACAGGACGGGTAAAACCCCTGAAGTCAGCACCATGGATGCCATGTTGGACCTGATCag ctgcatgttttagaccttagtcccctggactgtgtgtccattgacttcaggtATTGTATTGGTTGTGAGCGCAAAGCCTGGGGTCACTGAGAAAGTGAATGACATCAACAGAATGGGTAAAACCCCTGAAGTCAGCAGCATGGATGCGATGTTGGACCTGATCaggtaaggttttgctcatgtgtgactttatcacacaccacatgtttttgcca Alignment from CESAR gtATTGTGTTAGTTGTGAGTATCAAGCCTGGTGTCACTCAGAAAGTGAATGACATCAACAGGACGGGTAAAACCCCTGAAGTCAGCACCATGGATGCCATGTTGGACCTGATCag ctgcatgttttagaccttagtcccctggactgtgtgtccattgacttcaggtATTGTATTGGTTGTGAGCGCAAAGCCTGGGGTCACTGAGAAAGTGAATGACATCAACAGAATGGGTAAAACCCCTGAAGTCAGCAGCATGGATGCGATGTTGGACCTGATCaggtaaggttttgctcatgtgtgactttatcacacaccacatgtttttgcca Alignment from Spaln_aa2Genome GTATTGTGTTAGTTGTGAGTATCAAGCCTGGTGTCACTCAGAAAGTGAATGACATCAACAGGACGGGTAAAACCCCTGAAGTCAGCACCATGGATGCCATGTTGGACCTGATCAG ctgcatgttttagaccttagtcccctggactgtgtgtccattgacttcagGTATTGTATTGGTTGTGAGCGCAAAGCCTGGGGTCACTGAGAAAGTGAATGACATCAACAGAATGGGTAAAACCCCTGAAGTCAGCAGCATGGATGCGATGTTGGACCTGATCAGgtaaggttttgctcatgtgtgactttatcacacaccacatgtttttgcca Alignment from Spaln_nt2Genome GTATTGTGTTAGTTGTGAGTATCAAGCCTGGTGTCACTCAGAAAGTGAATGACATCAACAGGACGGGTAAAACCCCTGAAGTCAGCACCATGGATGCCATGTTGGACCTGATCAG ctgcatgttttagaccttagtcccctggactgtgtgtccattgacttcagGTATTGTATTGGTTGTGAGCGCAAAGCCTGGGGTCACTGAGAAAGTGAATGACATCAACAGAATGGGTAAAACCCCTGAAGTCAGCAGCATGGATGCGATGTTGGACCTGATCAGgtaaggttttgctcatgtgtgactttatcacacaccacatgtttttgcca Alignment from Pairagon GTATTGTGTTAGTTGTGAGTATCAAGCCTGGTGTCACTCAGAAAGTGAATGACATCAACAGGACGGGTAAAACCCCTGAAGTCAGCACCATGGATGCCATGTTGGACCTGATCAG ctgcatgttttagaccttagtcccctggactgtgtgtccattgacttcagGTATTGTATTGGTTGTGAGCGCAAAGCCTGGGGTCACTGAGAAAGTGAATGACATCAACAGAATGGGTAAAACCCCTGAAGTCAGCAGCATGGATGCGATGTTGGACCTGATCAGgtaaggttttgctcatgtgtgactttatcacacaccacatgtttttgcca Alignment from Exonerate_protein2genome GTATTGTGTTAGTTGTGAGTATCAAGCCTGGTGTCACTCAGAAAGTGAATGACATCAACAGGACGGGTAAAACCCCTGAAGTCAGCACCATGGATGCCATGTTGGACCTGATCAG ctgcatgttttagaccttagtcccctggactgtgtgtccattgacttcagGTATTGTATTGGTTGTGAGCGCAAAGCCTGGGGTCACTGAGAAAGTGAATGACATCAACAGAATGGGTAAAACCCCTGAAGTCAGCAGCATGGATGCGATGTTGGACCTGATCAGgtaaggttttgctcatgtgtgactttatcacacaccacatgtttttgcca Alignment from Exonerate_coding2genome GTATTGTGTTAGTTGTGAGTATCAAGCCTGGTGTCACTCAGAAAGTGAATGACATCAACAGGACGGGTAAAACCCCTGAAGTCAGCACCATGGATGCCATGTTGGACCTGATCAG ctgcatgttttagaccttagtcccctggactgtgtgtccattgacttcagGTATTGTATTGGTTGTGAGCGCAAAGCCTGGGGTCACTGAGAAAGTGAATGACATCAACAGAATGGGTAAAACCCCTGAAGTCAGCAGCATGGATGCGATGTTGGACCTGATCAGgtaaggttttgctcatgtgtgactttatcacacaccacatgtttttgcca Alignment from GeneWise GTATTGTGTTAGTTGTGAGTATCAAGCCTGGTGTCACTCAGAAAGTGAATGACATCAACAGGACGGGTAAAACCCCTGAAGTCAGCACCATGGATGCCATGTTGGACCTGATCAG ctgcatgttttagaccttagtcccctggactgtgtgtccattgacttcagGTATTGTATTGGTTGTGAGCGCAAAGCCTGGGGTCACTGAGAAAGTGAATGACATCAACAGAATGGGTAAAACCCCTGAAGTCAGCAGCATGGATGCGATGTTGGACCTGATCAGgtaaggttttgctcatgtgtgactttatcacacaccacatgtttttgcca #### Slc22a19_ID2204_9 --> 1 - 2 Original Alignment gGCAACTGCTTTAGGAGTCGTTGGAATTGCTGGCAGTGCTGGAGGAGCGCTGTCTCCTCTACTTATGATCCTCACGACATACTCTGCTTCCTTGCCCTGGATCATCTATGGGATTCTTCCCTTCCTTGGTGGCCTCGTTGCCCTTCTTCTTCCTGAGACCAAGAATCAGCCTCTGCCTGACTCAATCCAAGATATAGAAAATaa aagattacaatttatatgaaaatgctagtgtgctctttttgtccacctagtGCAACGGCTTTAGGAGTTGTTGGAATTGCTGGCAGTGCTGGTGGGGCACTCTTTCCCCTGCTCATGATCCTCACAACCTACTCCGCTCCATTGCCCTGGATTATCTATGGGATTCTCCCCTTTCTTGGC---CTCATTGCGCTTTTTCTTCCTGGGACAAAGAATCAGCCTCTGTCTGACTCAGTCCAAGATAAAGAGAATaagtgaggaatagctctctggggtttcctatcagtacttaggcttaggtgga Alignment from CESAR gGCAACTGCTTTAGGAGTCGTTGGAATTGCTGGCAGTGCTGGAGGAGCGCTGTCTCCTCTACTTATGATCCTCACGACATACTCTGCTTCCTTGCCCTGGATCATCTATGGGATTCTTCCCTTCCTTGGTGGCCTCGTTGCCCTTCTTCTTCCTGAGACCAAGAATCAGCCTCTGCCTGACTCAATCCAAGATATAGAAAATaa aagattacaatttatatgaaaatgctagtgtgctctttttgtccacctagtGCAACGGCTTTAGGAGTTGTTGGAATTGCTGGCAGTGCTGGTGGGGCACTCTTTCCCCTGCTCATGATCCTCACAACCTACTCCGCTCCATTGCCCTGGATTATCTATGGGATTCTCCCCTTTCTT---GGCCTCATTGCGCTTTTTCTTCCTGGGACAAAGAATCAGCCTCTGTCTGACTCAGTCCAAGATAAAGAGAATaagtgaggaatagctctctggggtttcctatcagtacttaggcttaggtgga Alignment from Spaln_aa2Genome GGCAACTGCTTTAGGAGTCGTTGGAATTGCTGGCAGTGCTGGAGGAGCGCTGTCTCCTCTACTTATGATCCTCACGACATACTCTGCTTCCTTGCCCTGGATCATCTATGGGATTCTTCCCTTCCTTGGTGGCCTCGTTGCCCTTCTTCTTCCTGAGACCAAGAATCAGCCTCTGCCTGACTCAATCCAAGATATAGAAAATAA aagattacaatttatatgaaaatgctagtgtgctctttttgtccacctagTGCAACGGCTTTAGGAGTTGTTGGAATTGCTGGCAGTGCTGGTGGGGCACTCTTTCCCCTGCTCATGATCCTCACAACCTACTCCGCTCCATTGCCCTGGATTATCTATGGGATTCTCCCCTTTCTTGGC---CTCATTGCGCTTTTTCTTCCTGGGACAAAGAATCAGCCTCTGTCTGACTCAGTCCAAGATAAAGAGAATAAgtgaggaatagctctctggggtttcctatcagtacttaggcttaggtgga Alignment from Spaln_nt2Genome GGCAACTGCTTTAGGAGTCGTTGGAATTGCTGGCAGTGCTGGAGGAGCGCTGTCTCCTCTACTTATGATCCTCACGACATACTCTGCTTCCTTGCCCTGGATCATCTATGGGATTCTTCCCTTCCTTGGTGGCCTCGTTGCCCTTCTTCTTCCTGAGACCAAGAATCAGCCTCTGCCTGACTCAATCCAAGATATAGAAAATAA aagattacaatttatatgaaaatgctagtgtgctctttttgtccacctagTGCAACGGCTTTAGGAGTTGTTGGAATTGCTGGCAGTGCTGGTGGGGCACTCTTTCCCCTGCTCATGATCCTCACAACCTACTCCGCTCCATTGCCCTGGATTATCTATGGGATTCTCCCCTTTCTTGG---CCTCATTGCGCTTTTTCTTCCTGGGACAAAGAATCAGCCTCTGTCTGACTCAGTCCAAGATAAAGAGAATAAgtgaggaatagctctctggggtttcctatcagtacttaggcttaggtgga Alignment from Pairagon GGCAACTGCTTTAGGAGTCGTTGGAATTGCTGGCAGTGCTGGAGGAGCGCTGTCTCCTCTACTTATGATCCTCACGACATACTCTGCTTCCTTGCCCTGGATCATCTATGGGATTCTTCCCTTCCTTGGTGGCCTCGTTGCCCTTCTTCTTCCTGAGACCAAGAATCAGCCTCTGCCTGACTCAATCCAAGATATAGAAAATAA aagattacaatttatatgaaaatgctagtgtgctctttttgtccacctagTGCAACGGCTTTAGGAGTTGTTGGAATTGCTGGCAGTGCTGGTGGGGCACTCTTTCCCCTGCTCATGATCCTCACAACCTACTCCGCTCCATTGCCCTGGATTATCTATGGGATTCTCCCCTTTCT---TGGCCTCATTGCGCTTTTTCTTCCTGGGACAAAGAATCAGCCTCTGTCTGACTCAGTCCAAGATAAAGAGAATAAgtgaggaatagctctctggggtttcctatcagtacttaggcttaggtgga Alignment from Exonerate_protein2genome GGCAACTGCTTTAGGAGTCGTTGGAATTGCTGGCAGTGCTGGAGGAGCGCTGTCTCCTCTACTTATGATCCTCACGACATACTCTGCTTCCTTGCCCTGGATCATCTATGGGATTCTTCCCTTCCTTGGTGGCCTCGTTGCCCTTCTTCTTCCTGAGACCAAGAATCAGCCTCTGCCTGACTCAATCCAAGATATAGAAAATAA aagattacaatttatatgaaaatgctagtgtgctctttttgtccacctagTGCAACGGCTTTAGGAGTTGTTGGAATTGCTGGCAGTGCTGGTGGGGCACTCTTTCCCCTGCTCATGATCCTCACAACCTACTCCGCTCCATTGCCCTGGATTATCTATGGGATTCTCCCCTTTCTT---GGCCTCATTGCGCTTTTTCTTCCTGGGACAAAGAATCAGCCTCTGTCTGACTCAGTCCAAGATAAAGAGAATAAgtgaggaatagctctctggggtttcctatcagtacttaggcttaggtgga Alignment from Exonerate_coding2genome GGCAACTGCTTTAGGAGTCGTTGGAATTGCTGGCAGTGCTGGAGGAGCGCTGTCTCCTCTACTTATGATCCTCACGACATACTCTGCTTCCTTGCCCTGGATCATCTATGGGATTCTTCCCTTCCTTGGTGGCCTCGTTGCCCTTCTTCTTCCTGAGACCAAGAATCAGCCTCTGCCTGACTCAATCCAAGATATAGAAAATAA aagattacaatttatatgaaaatgctagtgtgctctttttgtccacctagTGCAACGGCTTTAGGAGTTGTTGGAATTGCTGGCAGTGCTGGTGGGGCACTCTTTCCCCTGCTCATGATCCTCACAACCTACTCCGCTCCATTGCCCTGGATTATCTATGGGATTCTCCCCTTTCTT---GGCCTCATTGCGCTTTTTCTTCCTGGGACAAAGAATCAGCCTCTGTCTGACTCAGTCCAAGATAAAGAGAATAAgtgaggaatagctctctggggtttcctatcagtacttaggcttaggtgga Alignment from GeneWise GGCAACTGCTTTAGGAGTCGTTGGAATTGCTGGCAGTGCTGGAGGAGCGCTGTCTCCTCTACTTATGATCCTCACGACATACTCTGCTTCCTTGCCCTGGATCATCTATGGGATTCTTCCCTTCCTTGGTGGCCTCGTTGCCCTTCTTCTTCCTGAGACCAAGAATCAGCCTCTGCCTGACTCAATCCAAGATATAGAAAATAAG aagattacaatttatatgaaaatgctagtgtgctctttttgtccacctagTGCAACGGCTTTAGGAGTTGTTGGAATTGCTGGCAGTGCTGGTGGGGCACTCTTTCCCCTGCTCATGATCCTCACAACCTACTCCGCTCCATTGCCCTGGATTATCTATGGGATTCTCCCCTTTCTTGGC---CTCATTGCGCTTTTTCTTCCTGGGACAAAGAATCAGCCTCTGTCTGACTCAGTCCAAGATAAAGAGAATAAGtgaggaatagctctctggggtttcctatcagtacttaggcttaggtgga #### Slc22a19_ID2207_6 --> 0 - 2 Original Alignment GTTGTGAAAACTATCATGAAGGAGGAGTTGGAGGCAGCACAGACAAAACCCTCCCCACTGGACTTGTTCCGTACACCTAACCTTCGCAAGCGGATCTGTCTCCTATCCTTTGTGag gtagcagcatctcatcctcttggggtagctaagcacattcctctttacagGTTGTAAAGGCTATCATGAAGGAGGAGCTAGAGGCAGCACAGACAAAACCTTCCCCTCTGGATCTGTTCCGGACGCCTAACATTCAAAAGCAAATAGGCCTCCTGTCATTTGTAaggtatggcccgcatattcctcaaggcttcaataagatacataagcaacgga Alignment from CESAR GTTGTGAAAACTATCATGAAGGAGGAGTTGGAGGCAGCACAGACAAAACCCTCCCCACTGGACTTGTTCCGTACACCTAACCTTCGCAAGCGGATCTGTCTCCTATCCTTTGTGag gtagcagcatctcatcctcttggggtagctaagcacattcctctttacagGTTGTAAAGGCTATCATGAAGGAGGAGCTAGAGGCAGCACAGACAAAACCTTCCCCTCTGGATCTGTTCCGGACGCCTAACATTCAAAAGCAAATAGGCCTCCTGTCATTTGTAaggtatggcccgcatattcctcaaggcttcaataagatacataagcaacgga Alignment from Spaln_aa2Genome GTTGTGAAAACTATCATGAAGGAGGAGTTGGAGGCAGCACAGACAAAACCCTCCCCACTGGACTTGTTCCGTACACCTAACCTTCGCAAGCGGATCTGTCTCCTATCCTTTGTGAG gtagcagcatctcatcctcttggggtagctaagcacattcctctttacagGTTGTAAAGGCTATCATGAAGGAGGAGCTAGAGGCAGCACAGACAAAACCTTCCCCTCTGGATCTGTTCCGGACGCCTAACATTCAAAAGCAAATAGGCCTCCTGTCATTTGTAAGgtatggcccgcatattcctcaaggcttcaataagatacataagcaacgga Alignment from Spaln_nt2Genome GTTGTGAAAACTATCATGAAGGAGGAGTTGGAGGCAGCACAGACAAAACCCTCCCCACTGGACTTGTTCCGTACACCTAACCTTCGCAAGCGGATCTGTCTCCTATCCTTTGTGAG gtagcagcatctcatcctcttggggtagctaagcacattcctctttacagGTTGTAAAGGCTATCATGAAGGAGGAGCTAGAGGCAGCACAGACAAAACCTTCCCCTCTGGATCTGTTCCGGACGCCTAACATTCAAAAGCAAATAGGCCTCCTGTCATTTGTAAGgtatggcccgcatattcctcaaggcttcaataagatacataagcaacgga Alignment from Pairagon GTTGTGAAAACTATCATGAAGGAGGAGTTGGAGGCAGCACAGACAAAACCCTCCCCACTGGACTTGTTCCGTACACCTAACCTTCGCAAGCGGATCTGTCTCCTATCCTTTGTGAG gtagcagcatctcatcctcttggggtagctaagcacattcctctttacagGTTGTAAAGGCTATCATGAAGGAGGAGCTAGAGGCAGCACAGACAAAACCTTCCCCTCTGGATCTGTTCCGGACGCCTAACATTCAAAAGCAAATAGGCCTCCTGTCATTTGTAAGgtatggcccgcatattcctcaaggcttcaataagatacataagcaacgga Alignment from Exonerate_protein2genome GTTGTGAAAACTATCATGAAGGAGGAGTTGGAGGCAGCACAGACAAAACCCTCCCCACTGGACTTGTTCCGTACACCTAACCTTCGCAAGCGGATCTGTCTCCTATCCTTTGTGAG gtagcagcatctcatcctcttggggtagctaagcacattcctctttacagGTTGTAAAGGCTATCATGAAGGAGGAGCTAGAGGCAGCACAGACAAAACCTTCCCCTCTGGATCTGTTCCGGACGCCTAACATTCAAAAGCAAATAGGCCTCCTGTCATTTGTAAGgtatggcccgcatattcctcaaggcttcaataagatacataagcaacgga Alignment from Exonerate_coding2genome GTTGTGAAAACTATCATGAAGGAGGAGTTGGAGGCAGCACAGACAAAACCCTCCCCACTGGACTTGTTCCGTACACCTAACCTTCGCAAGCGGATCTGTCTCCTATCCTTTGTGAG gtagcagcatctcatcctcttggggtagctaagcacattcctctttacagGTTGTAAAGGCTATCATGAAGGAGGAGCTAGAGGCAGCACAGACAAAACCTTCCCCTCTGGATCTGTTCCGGACGCCTAACATTCAAAAGCAAATAGGCCTCCTGTCATTTGTAAGgtatggcccgcatattcctcaaggcttcaataagatacataagcaacgga Alignment from GeneWise GTTGTGAAAACTATCATGAAGGAGGAGTTGGAGGCAGCACAGACAAAACCCTCCCCACTGGACTTGTTCCGTACACCTAACCTTCGCAAGCGGATCTGTCTCCTATCCTTTGTGAG gtagcagcatctcatcctcttggggtagctaagcacattcctctttacagGTTGTAAAGGCTATCATGAAGGAGGAGCTAGAGGCAGCACAGACAAAACCTTCCCCTCTGGATCTGTTCCGGACGCCTAACATTCAAAAGCAAATAGGCCTCCTGTCATTTGTAAGgtatggcccgcatattcctcaaggcttcaataagatacataagcaacgga #### Slc22a19_ID2211_2 --> 0 - 2 Original Alignment TGGGACCTGGTGTGTGGATCTCAGGCACTGAATTCAGTGGCTAAATTTATATACATGACTGGTATCTTTATAGGATATATCATGGGTGGCCACTTATCAGACaa tccattatgctattaaatctggcacatgattttttggtactatgttttagTGGTATCTGGTGTGTGGATCCCACCCACTTAACTCAGTG---AAACTCATATATATGACTGGTATTTTTATAGGATATATCATGAGTGGCCACCTATTGGACaagtgagcacctgtaccttacaattgctcaacagtctcctaatttctcacca Alignment from CESAR TGGGACCTGGTGTGTGGATCTCAGGCACTGAATTCAGTGGCTAAATTTATATACATGACTGGTATCTTTATAGGATATATCATGGGTGGCCACTTATCAGACaa tccattatgctattaaatctggcacatgattttttggtactatgttttagTGGTATCTGGTGTGTGGATCCCACCCACTTAACTCAGTG---AAACTCATATATATGACTGGTATTTTTATAGGATATATCATGAGTGGCCACCTATTGGACaagtgagcacctgtaccttacaattgctcaacagtctcctaatttctcacca Alignment from Spaln_aa2Genome TGGGACCTGGTGTGTGGATCTCAGGCACTGAATTCAGTGGCTAAATTTATATACATGACTGGTATCTTTATAGGATATATCATGGGTGGCCACTTATCAGACAA tccattatgctattaaatctggcacatgattttttggtactatgttttagTGGTATCTGGTGTGTGGATCCCACCCACTTAACTCAGTG---AAACTCATATATATGACTGGTATTTTTATAGGATATATCATGAGTGGCCACCTATTGGACAAgtgagcacctgtaccttacaattgctcaacagtctcctaatttctcacca Alignment from Spaln_nt2Genome TGGGACCTGGTGTGTGGATCTCAGGCACTGAATTCAGTGGCTAAATTTATATACATGACTGGTATCTTTATAGGATATATCATGGGTGGCCACTTATCAGACAA tccattatgctattaaatctggcacatgattttttggtactatgttttagTGGTATCTGGTGTGTGGATCCCACCCACTTAACTCAGTG---AAACTCATATATATGACTGGTATTTTTATAGGATATATCATGAGTGGCCACCTATTGGACAAgtgagcacctgtaccttacaattgctcaacagtctcctaatttctcacca Alignment from Pairagon TGGGACCTGGTGTGTGGATCTCAGGCACTGAATTCAGTGGCTAAATTTATATACATGACTGGTATCTTTATAGGATATATCATGGGTGGCCACTTATCAGACAA tccattatgctattaaatctggcacatgattttttggtactatgttttagTGGTATCTGGTGTGTGGATCCCACCCACTTAACTCAGTG---AAACTCATATATATGACTGGTATTTTTATAGGATATATCATGAGTGGCCACCTATTGGACAAgtgagcacctgtaccttacaattgctcaacagtctcctaatttctcacca Alignment from Exonerate_protein2genome TGGGACCTGGTGTGTGGATCTCAGGCACTGAATTCAGTGGCTAAATTTATATACATGACTGGTATCTTTATAGGATATATCATGGGTGGCCACTTATCAGACAA tccattatgctattaaatctggcacatgattttttggtactatgttttagTGGTATCTGGTGTGTGGATCCCACCCACTTAACTCAGTG---AAACTCATATATATGACTGGTATTTTTATAGGATATATCATGAGTGGCCACCTATTGGACAAgtgagcacctgtaccttacaattgctcaacagtctcctaatttctcacca Alignment from Exonerate_coding2genome TGGGACCTGGTGTGTGGATCTCAGGCACTGAATTCAGTGGCTAAATTTATATACATGACTGGTATCTTTATAGGATATATCATGGGTGGCCACTTATCAGACAA tccattatgctattaaatctggcacatgattttttggtactatgttttagTGGTATCTGGTGTGTGGATCCCACCCACTTAACTCAGTG---AAACTCATATATATGACTGGTATTTTTATAGGATATATCATGAGTGGCCACCTATTGGACAAgtgagcacctgtaccttacaattgctcaacagtctcctaatttctcacca Alignment from GeneWise TGGGACCTGGTGTGTGGATCTCAGGCACTGAATTCAGTGGCTAAATTTATATACATGACTGGTATCTTTATAGGATATATCATGGGTGGCCACTTATCAGACAA tccattatgctattaaatctggcacatgattttttggtactatgttttagTGGTATCTGGTGTGTGGATCCCACCCACTTAACTCAGTG---AAACTCATATATATGACTGGTATTTTTATAGGATATATCATGAGTGGCCACCTATTGGACAAgtgagcacctgtaccttacaattgctcaacagtctcctaatttctcacca #### Slc22a20_ID1346_7 --> 1 - 1 Original Alignment gTTCTCTAATTCTGTGGCTTACTACGGCCTGGCCATGGACCTGCAGAAGTTTGGGCTCAGCATCTACCTGGTACAGGCTCTGTTTGGGATCATCGATATCCCGGCCATGCTGGTCGCCACCACCACGATGATTTATGTGGGACGACGGGCCACA---GTGTCCTCCTTCCTCATACTAGCTGGGCTCATGGTCATTGCCAACATGTTTATGCCTGAGg aagtcccttaatcatcagataaacaacctccacgtgttgcttgctgacaggTTTTCCGTCTTGGTCGCTTACTATGCCTTAGCCATGGATCTGAAGAAATTTGGACTCAGCATCTACCTTGTGCAAGCCTTGTTCGGGATCATTGATATCCCTGCCATGCTGATTGCAACTAACACAATGATTTATGTTGGACAACGGGCTACCACAATACCTGCACTTCTGATACTAGCCGGGCTTATGGCCATTTCAAACATGTTTATGCCTGGGggtaggattacctatgatcacaactttttctttataacccagaagtaggaa Alignment from CESAR gTTCTCTAATTCTGTGGCTTACTACGGCCTGGCCATGGACCTGCAGAAGTTTGGGCTCAGCATCTACCTGGTACAGGCTCTGTTTGGGATCATCGATATCCCGGCCATGCTGGTCGCCACCACCACGATGATTTATGTGGGACGACGGGCC---ACAGTGTCCTCCTTCCTCATACTAGCTGGGCTCATGGTCATTGCCAACATGTTTATGCCTGAGg aagtcccttaatcatcagataaacaacctccacgtgttgcttgctgacaggTTTTCCGTCTTGGTCGCTTACTATGCCTTAGCCATGGATCTGAAGAAATTTGGACTCAGCATCTACCTTGTGCAAGCCTTGTTCGGGATCATTGATATCCCTGCCATGCTGATTGCAACTAACACAATGATTTATGTTGGACAACGGGCTACCACAATACCTGCACTTCTGATACTAGCCGGGCTTATGGCCATTTCAAACATGTTTATGCCTGGGggtaggattacctatgatcacaactttttctttataacccagaagtaggaa Alignment from Spaln_aa2Genome GTTCTCTAATTCTGTGGCTTACTACGGCCTGGCCATGGACCTGCAGAAGTTTGGGCTCAGCATCTACCTGGTACAGGCTCTGTTTGGGATCATCGATATCCCGGCCATGCTGGTCGCCACCACCACGATGATTTATGTGGGACGACGGGCC---ACAGTGTCCTCCTTCCTCATACTAGCTGGGCTCATGGTCATTGCCAACATGTTTATGCCTGAGG aagtcccttaatcatcagataaacaacctccacgtgttgcttgctgacagGTTTTCCGTCTTGGTCGCTTACTATGCCTTAGCCATGGATCTGAAGAAATTTGGACTCAGCATCTACCTTGTGCAAGCCTTGTTCGGGATCATTGATATCCCTGCCATGCTGATTGCAACTAACACAATGATTTATGTTGGACAACGGGCTACCACAATACCTGCACTTCTGATACTAGCCGGGCTTATGGCCATTTCAAACATGTTTATGCCTGGGGgtaggattacctatgatcacaactttttctttataacccagaagtaggaa Alignment from Spaln_nt2Genome GTTCTCTAATTCTGTGGCTTACTACGGCCTGGCCATGGACCTGCAGAAGTTTGGGCTCAGCATCTACCTGGTACAGGCTCTGTTTGGGATCATCGATATCCCGGCCATGCTGGTCGCCACCACCACGATGATTTATGTGGGACGACGGGC---CACAGTGTCCTCCTTCCTCATACTAGCTGGGCTCATGGTCATTGCCAACATGTTTATGCCTGAGG aagtcccttaatcatcagataaacaacctccacgtgttgcttgctgacagGTTTTCCGTCTTGGTCGCTTACTATGCCTTAGCCATGGATCTGAAGAAATTTGGACTCAGCATCTACCTTGTGCAAGCCTTGTTCGGGATCATTGATATCCCTGCCATGCTGATTGCAACTAACACAATGATTTATGTTGGACAACGGGCTACCACAATACCTGCACTTCTGATACTAGCCGGGCTTATGGCCATTTCAAACATGTTTATGCCTGGGGgtaggattacctatgatcacaactttttctttataacccagaagtaggaa Alignment from Pairagon GTTCTCTAATTCTGTGGCTTACTACGGCCTGGCCATGGACCTGCAGAAGTTTGGGCTCAGCATCTACCTGGTACAGGCTCTGTTTGGGATCATCGATATCCCGGCCATGCTGGTCGCCACCACCACGATGATTTATGTGGGACGACGGGC--------------CACAGTGTCCTCCTTCCTCATACTAGCTGGGCTCATGGTCATTGCCAACATGTTTATGCCTGAGG aagtcccttaatcatcagataaacaacctccacgtgttgcttgctgacagGTTTTCCGTCTTGGTCGCTTACTATGCCTTAGCCATGGATCTGAAGAAATTTGGACTCAGCATCTACCTTGTGCAAGCCTTGTTCGGGATCATTGATATCCCTGCCATGCTGATTGCAACTAACACAATGATTTATGTTGGACAACGGGCTACCACAATACCTGCAC-----------TTCTGATACTAGCCGGGCTTATGGCCATTTCAAACATGTTTATGCCTGGGGgtaggattacctatgatcacaactttttctttataacccagaagtaggaa Alignment from Exonerate_protein2genome GTTCTCTAATTCTGTGGCTTACTACGGCCTGGCCATGGACCTGCAGAAGTTTGGGCTCAGCATCTACCTGGTACAGGCTCTGTTTGGGATCATCGATATCCCGGCCATGCTGGTCGCCACCACCACGATGATTTATGTGGGACGACGGGCC---ACAGTGTCCTCCTTCCTCATACTAGCTGGGCTCATGGTCATTGCCAACATGTTTATGCCTGAGG aagtcccttaatcatcagataaacaacctccacgtgttgcttgctgacagGTTTTCCGTCTTGGTCGCTTACTATGCCTTAGCCATGGATCTGAAGAAATTTGGACTCAGCATCTACCTTGTGCAAGCCTTGTTCGGGATCATTGATATCCCTGCCATGCTGATTGCAACTAACACAATGATTTATGTTGGACAACGGGCTACCACAATACCTGCACTTCTGATACTAGCCGGGCTTATGGCCATTTCAAACATGTTTATGCCTGGGGgtaggattacctatgatcacaactttttctttataacccagaagtaggaa Alignment from Exonerate_coding2genome GTTCTCTAATTCTGTGGCTTACTACGGCCTGGCCATGGACCTGCAGAAGTTTGGGCTCAGCATCTACCTGGTACAGGCTCTGTTTGGGATCATCGATATCCCGGCCATGCTGGTCGCCACCACCACGATGATTTATGTGGGACGACGGGCC---ACAGTGTCCTCCTTCCTCATACTAGCTGGGCTCATGGTCATTGCCAACATGTTTATGCCT aagtcccttaatcatcagataaacaacctccacgtgttgcttgctgacagGTTTTCCGTCTTGGTCGCTTACTATGCCTTAGCCATGGATCTGAAGAAATTTGGACTCAGCATCTACCTTGTGCAAGCCTTGTTCGGGATCATTGATATCCCTGCCATGCTGATTGCAACTAACACAATGATTTATGTTGGACAACGGGCTACCACAATACCTGCACTTCTGATACTAGCCGGGCTTATGGCCATTTCAAACATGTTTATGCCTgggggtaggattacctatgatcacaactttttctttataacccagaagtaggaa Alignment from GeneWise GTTCTCTAATTCTGTGGCTTACTACGGCCTGGCCATGGACCTGCAGAAGTTTGGGCTCAGCATCTACCTGGTACAGGCTCTGTTTGGGATCATCGATATCCCGGCCATGCTGGTCGCCACCACCACGATGATTTATGTGGGACGACGGGCCACA---GTGTCCTCCTTCCTCATACTAGCTGGGCTCATGGTCATTGCCAACATGTTTATGCCTGAGG aagtcccttaatcatcagataaacaacctccacgtgttgcttgctgacagGTTTTCCGTCTTGGTCGCTTACTATGCCTTAGCCATGGATCTGAAGAAATTTGGACTCAGCATCTACCTTGTGCAAGCCTTGTTCGGGATCATTGATATCCCTGCCATGCTGATTGCAACTAACACAATGATTTATGTTGGACAACGGGCTACCACAATACCTGCACTTCTGATACTAGCCGGGCTTATGGCCATTTCAAACATGTTTATGCCTGGGGgtaggattacctatgatcacaactttttctttataacccagaagtaggaa #### Slc22a26_ID2217_8 --> 2 - 2 Original Alignment aaATGCAGACTCTGCTTGTGGTTTTGATAACACTGGCAGGAGGAAGTTCTGCTATGATTTATAACAGTAATGTTCTATATTCAAGT------------GAGCTGATGCCCACGGTGATCag tccctgacagtgctggatttgccatatacgctttcttctgtttcttacagaaATGCAGACTTTGCTAGTAGTTTTAATAACACTGGCAGGAGGGAGCTCTGCT------------ACAAATATTCTTTATTCAAGTCTATACTCAAGTGATCTGATGCCTACAGTGATCaggtaagataccttgaattaacagagctcattcgtaatttggtagggtaggc Alignment from CESAR aaATGCAGACTCTGCTTGTGGTTTTGATAACACTGGCAGGAGGAAGTTCTGCT------ATGATTTATAACAGTAATGTTCTATATTCAAGTGAGCTGATGCCCACGGTGATCag tccctgacagtgctggatttgccatatacgctttcttctgtttcttacagaaATGCAGACTTTGCTAGTAGTTTTAATAACACTGGCAGGAGGGAGCTCTGCTACAAATATTCTTTATTCAAGT------CTATACTCAAGTGATCTGATGCCTACAGTGATCaggtaagataccttgaattaacagagctcattcgtaatttggtagggtaggc Alignment from Spaln_aa2Genome AAATGCAGACTCTGCTTGTGGTTTTGATAACACTGGCAGGAGGAAGTTCTGCTATGATTTATAACAGTAATGTTCTATATTCAAGTGAGCTGATGCCCACGGTGATCAG tccctgacagtgctggatttgccatatacgctttcttctgtttcttacagAAATGCAGACTTTGCTAGTAGTTTTAATAACACTGGCAGGAGGGAGCTCTGCTACAAATATTCTTTATTCAAGTCTATACTCAAGTGATCTGATGCCTACAGTGATCAGgtaagataccttgaattaacagagctcattcgtaatttggtagggtaggc Alignment from Spaln_nt2Genome AAATGCAGACTCTGCTTGTGGTTTTGATAACACTGGCAGGAGGAAGTTCTGCTATGATTTATAACAGTAATGTTCTATATTCAAGTGAGCTGATGCCCACGGTGATCAG tccctgacagtgctggatttgccatatacgctttcttctgtttcttacagAAATGCAGACTTTGCTAGTAGTTTTAATAACACTGGCAGGAGGGAGCTCTGCTACAAATATTCTTTATTCAAGTCTATACTCAAGTGATCTGATGCCTACAGTGATCAGgtaagataccttgaattaacagagctcattcgtaatttggtagggtaggc Alignment from Pairagon AAATGCAGACTCTGCTTGTGGTTTTGATAACACTGGCAGGAGGAAGTTCTGCTA-------------------TGATTTATAACAGTAATGTTCTATATTCAAGTGAGCTGATGCCCACGGTGATCAG tccctgacagtgctggatttgccatatacgctttcttctgtttcttacagAAATGCAGACTTTGCTAGTAGTTTTAATAACACTGGCAGGAGGGAGCTCTGCTACAAATATTCTTTATTCAAGT-------------------CTATACTCAAGTGATCTGATGCCTACAGTGATCAGgtaagataccttgaattaacagagctcattcgtaatttggtagggtaggc Alignment from Exonerate_protein2genome AAATGCAGACTCTGCTTGTGGTTTTGATAACACTGGCAGGAGGAAGTTCTGCTATGATTTATAACAGTAATGTTCTATATTCAAGTGAGCTGATGCCCACGGTGATCAG tccctgacagtgctggatttgccatatacgctttcttctgtttcttacagAAATGCAGACTTTGCTAGTAGTTTTAATAACACTGGCAGGAGGGAGCTCTGCTACAAATATTCTTTATTCAAGTCTATACTCAAGTGATCTGATGCCTACAGTGATCAGgtaagataccttgaattaacagagctcattcgtaatttggtagggtaggc Alignment from Exonerate_coding2genome AAATGCAGACTCTGCTTGTGGTTTTGATAACACTGGCAGGAGGAAGTTCTGCTATGATTTATAACAGTAATGTTCTATATTCAAGTGAGCTGATGCCCACGGTGATCAG tccctgacagtgctggatttgccatatacgctttcttctgtttcttacagAAATGCAGACTTTGCTAGTAGTTTTAATAACACTGGCAGGAGGGAGCTCTGCTACAAATATTCTTTATTCAAGTCTATACTCAAGTGATCTGATGCCTACAGTGATCAGgtaagataccttgaattaacagagctcattcgtaatttggtagggtaggc Alignment from GeneWise AAATGCAGACTCTGCTTGTGGTTTTGATAACACTGGCAGGAGGAAGTTCTGCTATGATTTATAACAGTAATGTTCTATATTCAAGTGAGCTGATGCCCACGGTGATCAG tccctgacagtgctggatttgccatatacgctttcttctgtttcttacagAAATGCAGACTTTGCTAGTAGTTTTAATAACACTGGCAGGAGGGAGCTCTGCTACAAATATTCTTTATTCAAGTCTATACTCAAGTGATCTGATGCCTACAGTGATCAGgtaagataccttgaattaacagagctcattcgtaatttggtagggtaggc #### Slc22a26_ID2221_4 --> 2 - 2 Original Alignment tgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAag cacagttcttgcaattttatgtgctaaaccgcactgtttcctctccacagtgTTAGAATGGACAAGCCCTAAAACCCAAGCATTGGTGACCACGCTGTCAACAAGCCCTCATCATTTTGGAGGCCTTATTCTGGCAGGATTGGCATTTGCGTTTCAAAACTGGCACCACCTTCAGCTAGCTGTATCTGTGCCAATTTTCGTTTTGCTTATACCAACAaggtgggtcacaagaattcttatacaccattctgtccaatggtacatttgag Alignment from CESAR tgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAag cacagttcttgcaattttatgtgctaaaccgcactgtttcctctccacagtgTTAGAATGGACAAGCCCTAAAACCCAAGCATTGGTGACCACGCTGTCAACAAGCCCTCATCATTTTGGAGGCCTTATTCTGGCAGGATTGGCATTTGCGTTTCAAAACTGGCACCACCTTCAGCTAGCTGTATCTGTGCCAATTTTCGTTTTGCTTATACCAACAaggtgggtcacaagaattcttatacaccattctgtccaatggtacatttgag Alignment from Spaln_aa2Genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG cacagttcttgcaattttatgtgctaaaccgcactgtttcctctccacagTGTTAGAATGGACAAGCCCTAAAACCCAAGCATTGGTGACCACGCTGTCAACAAGCCCTCATCATTTTGGAGGCCTTATTCTGGCAGGATTGGCATTTGCGTTTCAAAACTGGCACCACCTTCAGCTAGCTGTATCTGTGCCAATTTTCGTTTTGCTTATACCAACAAGgtgggtcacaagaattcttatacaccattctgtccaatggtacatttgag Alignment from Spaln_nt2Genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG cacagttcttgcaattttatgtgctaaaccgcactgtttcctctccacagTGTTAGAATGGACAAGCCCTAAAACCCAAGCATTGGTGACCACGCTGTCAACAAGCCCTCATCATTTTGGAGGCCTTATTCTGGCAGGATTGGCATTTGCGTTTCAAAACTGGCACCACCTTCAGCTAGCTGTATCTGTGCCAATTTTCGTTTTGCTTATACCAACAAGgtgggtcacaagaattcttatacaccattctgtccaatggtacatttgag Alignment from Pairagon TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG cacagttcttgcaattttatgtgctaaaccgcactgtttcctctccacagTGTTAGAATGGACAAGCCCTAAAACCCAAGCATTGGTGACCACGCTGTCAACAAGCCCTCATCATTTTGGAGGCCTTATTCTGGCAGGATTGGCATTTGCGTTTCAAAACTGGCACCACCTTCAGCTAGCTGTATCTGTGCCAATTTTCGTTTTGCTTATACCAACAAGgtgggtcacaagaattcttatacaccattctgtccaatggtacatttgag Alignment from Exonerate_protein2genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG cacagttcttgcaattttatgtgctaaaccgcactgtttcctctccacagTGTTAGAATGGACAAGCCCTAAAACCCAAGCATTGGTGACCACGCTGTCAACAAGCCCTCATCATTTTGGAGGCCTTATTCTGGCAGGATTGGCATTTGCGTTTCAAAACTGGCACCACCTTCAGCTAGCTGTATCTGTGCCAATTTTCGTTTTGCTTATACCAACAAGgtgggtcacaagaattcttatacaccattctgtccaatggtacatttgag Alignment from Exonerate_coding2genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG cacagttcttgcaattttatgtgctaaaccgcactgtttcctctccacagTGTTAGAATGGACAAGCCCTAAAACCCAAGCATTGGTGACCACGCTGTCAACAAGCCCTCATCATTTTGGAGGCCTTATTCTGGCAGGATTGGCATTTGCGTTTCAAAACTGGCACCACCTTCAGCTAGCTGTATCTGTGCCAATTTTCGTTTTGCTTATACCAACAAGgtgggtcacaagaattcttatacaccattctgtccaatggtacatttgag Alignment from GeneWise TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG cacagttcttgcaattttatgtgctaaaccgcactgtttcctctccacagTGTTAGAATGGACAAGCCCTAAAACCCAAGCATTGGTGACCACGCTGTCAACAAGCCCTCATCATTTTGGAGGCCTTATTCTGGCAGGATTGGCATTTGCGTTTCAAAACTGGCACCACCTTCAGCTAGCTGTATCTGTGCCAATTTTCGTTTTGCTTATACCAACAAGgtgggtcacaagaattcttatacaccattctgtccaatggtacatttgag #### Slc22a26_ID2222_3 --> 1 - 1 Original Alignment gTTTGGGAGGAAGTTACTTTTCAGATGTGCTTTGTTGCAAATGGCCATCACTGGGACCTGTACAGCCTTGGCTCCCACCTTCTTCATCTACTGCTTACTTCGCTTCCTGACAGGGCTTTGTATCATACCCATAAACACAAATAGTGTTTTGCTCa tattttaaacaggtgatctatgtctctgatcagccttttgcttcctccagaTTTGGC---AAATTACTCTTCAGGTGTGCCTTGTTGCAAATGGCCATCACTGGGACATGTACAGTCTTAGAACCATCCTTCTTTATCTATTGCTTACTACGTTTTCTGACAGGGATTTGCATTATACCCATAAATATAAACAGTGTCTTGTTGagtacgggaaaacttccacagttcaaaactcccacagttccttgcaattta Alignment from CESAR gTTTGGGAGGAAGTTACTTTTCAGATGTGCTTTGTTGCAAATGGCCATCACTGGGACCTGTACAGCCTTGGCTCCCACCTTCTTCATCTACTGCTTACTTCGCTTCCTGACAGGGCTTTGTATCATACCCATAAACACAAATAGTGTTTTGCTCa tattttaaacaggtgatctatgtctctgatcagccttttgcttcctccagaTTTGGC---AAATTACTCTTCAGGTGTGCCTTGTTGCAAATGGCCATCACTGGGACATGTACAGTCTTAGAACCATCCTTCTTTATCTATTGCTTACTACGTTTTCTGACAGGGATTTGCATTATACCCATAAATATAAACAGTGTCTTGTTGagtacgggaaaacttccacagttcaaaactcccacagttccttgcaattta Alignment from Spaln_aa2Genome GTTTGGGAGGAAGTTACTTTTCAGATGTGCTTTGTTGCAAATGGCCATCACTGGGACCTGTACAGCCTTGGCTCCCACCTTCTTCATCTACTGCTTACTTCGCTTCCTGACAGGGCTTTGTATCATACCCATAAACACAAATAGTGTTTTGCTCA tattttaaacaggtgatctatgtctctgatcagccttttgcttcctccagATTTGGC---AAATTACTCTTCAGGTGTGCCTTGTTGCAAATGGCCATCACTGGGACATGTACAGTCTTAGAACCATCCTTCTTTATCTATTGCTTACTACGTTTTCTGACAGGGATTTGCATTATACCCATAAATATAAACAGTGTCTTGTTGAgtacgggaaaacttccacagttcaaaactcccacagttccttgcaattta Alignment from Spaln_nt2Genome GTTTGGGAGGAAGTTACTTTTCAGATGTGCTTTGTTGCAAATGGCCATCACTGGGACCTGTACAGCCTTGGCTCCCACCTTCTTCATCTACTGCTTACTTCGCTTCCTGACAGGGCTTTGTATCATACCCATAAACACAAATAGTGTTTTGCTCA tattttaaacaggtgatctatgtctctgatcagccttttgcttcctccagATTTG---GCAAATTACTCTTCAGGTGTGCCTTGTTGCAAATGGCCATCACTGGGACATGTACAGTCTTAGAACCATCCTTCTTTATCTATTGCTTACTACGTTTTCTGACAGGGATTTGCATTATACCCATAAATATAAACAGTGTCTTGTTGAgtacgggaaaacttccacagttcaaaactcccacagttccttgcaattta Alignment from Pairagon GTTTGGGAGGAAGTTACTTTTCAGATGTGCTTTGTTGCAAATGGCCATCACTGGGACCTGTACAGCCTTGGCTCCCACCTTCTTCATCTACTGCTTACTTCGCTTCCTGACAGGGCTTTGTATCATACCCATAAACACAAATAGTGTTTTGCTCA tattttaaacaggtgatctatgtctctgatcagccttttgcttcctccagATTTG---GCAAATTACTCTTCAGGTGTGCCTTGTTGCAAATGGCCATCACTGGGACATGTACAGTCTTAGAACCATCCTTCTTTATCTATTGCTTACTACGTTTTCTGACAGGGATTTGCATTATACCCATAAATATAAACAGTGTCTTGTTGAgtacgggaaaacttccacagttcaaaactcccacagttccttgcaattta Alignment from Exonerate_protein2genome GTTTGGGAGGAAGTTACTTTTCAGATGTGCTTTGTTGCAAATGGCCATCACTGGGACCTGTACAGCCTTGGCTCCCACCTTCTTCATCTACTGCTTACTTCGCTTCCTGACAGGGCTTTGTATCATACCCATAAACACAAATAGTGTTTTGCTCA tattttaaacaggtgatctatgtctctgatcagccttttgcttcctccagATTTGGC---AAATTACTCTTCAGGTGTGCCTTGTTGCAAATGGCCATCACTGGGACATGTACAGTCTTAGAACCATCCTTCTTTATCTATTGCTTACTACGTTTTCTGACAGGGATTTGCATTATACCCATAAATATAAACAGTGTCTTGTTGAgtacgggaaaacttccacagttcaaaactcccacagttccttgcaattta Alignment from Exonerate_coding2genome GTTTGGGAGGAAGTTACTTTTCAGATGTGCTTTGTTGCAAATGGCCATCACTGGGACCTGTACAGCCTTGGCTCCCACCTTCTTCATCTACTGCTTACTTCGCTTCCTGACAGGGCTTTGTATCATACCCATAAACACAAATAGTGTTTTGCTCA tattttaaacaggtgatctatgtctctgatcagccttttgcttcctccagATTTGGC---AAATTACTCTTCAGGTGTGCCTTGTTGCAAATGGCCATCACTGGGACATGTACAGTCTTAGAACCATCCTTCTTTATCTATTGCTTACTACGTTTTCTGACAGGGATTTGCATTATACCCATAAATATAAACAGTGTCTTGTTGAgtacgggaaaacttccacagttcaaaactcccacagttccttgcaattta Alignment from GeneWise GTTTGGGAGGAAGTTACTTTTCAGATGTGCTTTGTTGCAAATGGCCATCACTGGGACCTGTACAGCCTTGGCTCCCACCTTCTTCATCTACTGCTTACTTCGCTTCCTGACAGGGCTTTGTATCATACCCATAAACACAAATAGTGTTTTGCTCA tattttaaacaggtgatctatgtctctgatcagccttttgcttcctccagATTTGGC---AAATTACTCTTCAGGTGTGCCTTGTTGCAAATGGCCATCACTGGGACATGTACAGTCTTAGAACCATCCTTCTTTATCTATTGCTTACTACGTTTTCTGACAGGGATTTGCATTATACCCATAAATATAAACAGTGTCTTGTTGAgtacgggaaaacttccacagttcaaaactcccacagttccttgcaattta #### Slc22a27_ID2230_8 --> 2 - 2 Original Alignment aaATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAag aaagtaaccaacctttagctagctagaacttacctttctgcctcctgcagaaATGCAGACCCTGCGTATAATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTTCCAACCACACTAaggtacctgactcaagagtgacaccttccagccagccagggaaacctctgac Alignment from CESAR aaATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAag aaagtaaccaacctttagctagctagaacttacctttctgcctcctgcagaaATGCAGACCCTGCGTATAATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTTCCAACCACACTAaggtacctgactcaagagtgacaccttccagccagccagggaaacctctgac Alignment from Spaln_aa2Genome AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAG aaagtaaccaacctttagctagctagaacttacctttctgcctcctgcagAAATGCAGACCCTGCGTATAATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTTCCAACCACACTAAGgtacctgactcaagagtgacaccttccagccagccagggaaacctctgac Alignment from Spaln_nt2Genome AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAG aaagtaaccaacctttagctagctagaacttacctttctgcctcctgcagAAATGCAGACCCTGCGTATAATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTTCCAACCACACTAAGgtacctgactcaagagtgacaccttccagccagccagggaaacctctgac Alignment from Pairagon AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAG aaagtaaccaacctttagctagctagaacttacctttctgcctcctgcagAAATGCAGACCCTGCGTATAATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTTCCAACCACACTAAGgtacctgactcaagagtgacaccttccagccagccagggaaacctctgac Alignment from Exonerate_protein2genome AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAG aaagtaaccaacctttagctagctagaacttacctttctgcctcctgcagAAATGCAGACCCTGCGTATAATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTTCCAACCACACTAAGgtacctgactcaagagtgacaccttccagccagccagggaaacctctgac Alignment from Exonerate_coding2genome AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAG aaagtaaccaacctttagctagctagaacttacctttctgcctcctgcagAAATGCAGACCCTGCGTATAATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTTCCAACCACACTAAGgtacctgactcaagagtgacaccttccagccagccagggaaacctctgac Alignment from GeneWise AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAG aaagtaaccaacctttagctagctagaacttacctttctgcctcctgcagAAATGCAGACCCTGCGTATAATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTTCCAACCACACTAAGgtacctgactcaagagtgacaccttccagccagccagggaaacctctgac #### Slc22a27_ID2235_3 --> 1 - 1 Original Alignment gCTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGAAACCTGTGTAGCTTTTGCCCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGATTGTCTGTGGAACCCATATTAGTAAATAGTCACTTGCTCa agtctcaagtgcgtttggttactcatgtgattaatggagggttgttgcaggCTGGGTAGGAAACTCATCTTAACATGTGCCTTATTGCAATTTGCTATCAGTGAGACCTGTATCGCTTTTGCACCCTCTTTCTTCATCTTCTGCTCACTCCAAATCCCAACTGGATTGTCTGTGGAACCAAGATTAGTAAATAGCCACTTGCTAagtaagggtaactcagattaacagacacccgtatacatagtaagtaaaaac Alignment from CESAR gCTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGAAACCTGTGTAGCTTTTGCCCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGATTGTCTGTGGAACCCATATTAGTAAATAGTCACTTGCTCa agtctcaagtgcgtttggttactcatgtgattaatggagggttgttgcaggCTGGGTAGGAAACTCATCTTAACATGTGCCTTATTGCAATTTGCTATCAGTGAGACCTGTATCGCTTTTGCACCCTCTTTCTTCATCTTCTGCTCACTCCAAATCCCAACTGGATTGTCTGTGGAACCAAGATTAGTAAATAGCCACTTGCTAagtaagggtaactcagattaacagacacccgtatacatagtaagtaaaaac Alignment from Spaln_aa2Genome GCTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGAAACCTGTGTAGCTTTTGCCCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGATTGTCTGTGGAACCCATATTAGTAAATAGTCACTTGCTCA agtctcaagtgcgtttggttactcatgtgattaatggagggttgttgcagGCTGGGTAGGAAACTCATCTTAACATGTGCCTTATTGCAATTTGCTATCAGTGAGACCTGTATCGCTTTTGCACCCTCTTTCTTCATCTTCTGCTCACTCCAAATCCCAACTGGATTGTCTGTGGAACCAAGATTAGTAAATAGCCACTTGCTAAgtaagggtaactcagattaacagacacccgtatacatagtaagtaaaaac Alignment from Spaln_nt2Genome GCTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGAAACCTGTGTAGCTTTTGCCCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGATTGTCTGTGGAACCCATATTAGTAAATAGTCACTTGCTCA agtctcaagtgcgtttggttactcatgtgattaatggagggttgttgcagGCTGGGTAGGAAACTCATCTTAACATGTGCCTTATTGCAATTTGCTATCAGTGAGACCTGTATCGCTTTTGCACCCTCTTTCTTCATCTTCTGCTCACTCCAAATCCCAACTGGATTGTCTGTGGAACCAAGATTAGTAAATAGCCACTTGCTAAgtaagggtaactcagattaacagacacccgtatacatagtaagtaaaaac Alignment from Pairagon GCTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGAAACCTGTGTAGCTTTTGCCCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGATTGTCTGTGGAACCCATATTAGTAAATAGTCACTTGCTCA agtctcaagtgcgtttggttactcatgtgattaatggagggttgttgcagGCTGGGTAGGAAACTCATCTTAACATGTGCCTTATTGCAATTTGCTATCAGTGAGACCTGTATCGCTTTTGCACCCTCTTTCTTCATCTTCTGCTCACTCCAAATCCCAACTGGATTGTCTGTGGAACCAAGATTAGTAAATAGCCACTTGCTAAgtaagggtaactcagattaacagacacccgtatacatagtaagtaaaaac Alignment from Exonerate_protein2genome GCTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGAAACCTGTGTAGCTTTTGCCCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGATTGTCTGTGGAACCCATATTAGTAAATAGTCACTTGCTCA agtctcaagtgcgtttggttactcatgtgattaatggagggttgttgcagGCTGGGTAGGAAACTCATCTTAACATGTGCCTTATTGCAATTTGCTATCAGTGAGACCTGTATCGCTTTTGCACCCTCTTTCTTCATCTTCTGCTCACTCCAAATCCCAACTGGATTGTCTGTGGAACCAAGATTAGTAAATAGCCACTTGCTAAgtaagggtaactcagattaacagacacccgtatacatagtaagtaaaaac Alignment from Exonerate_coding2genome GCTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGAAACCTGTGTAGCTTTTGCCCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGATTGTCTGTGGAACCCATATTAGTAAATAGTCACTTGCTCA agtctcaagtgcgtttggttactcatgtgattaatggagggttgttgcagGCTGGGTAGGAAACTCATCTTAACATGTGCCTTATTGCAATTTGCTATCAGTGAGACCTGTATCGCTTTTGCACCCTCTTTCTTCATCTTCTGCTCACTCCAAATCCCAACTGGATTGTCTGTGGAACCAAGATTAGTAAATAGCCACTTGCTAAgtaagggtaactcagattaacagacacccgtatacatagtaagtaaaaac Alignment from GeneWise GCTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGAAACCTGTGTAGCTTTTGCCCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGATTGTCTGTGGAACCCATATTAGTAAATAGTCACTTGCTCA agtctcaagtgcgtttggttactcatgtgattaatggagggttgttgcagGCTGGGTAGGAAACTCATCTTAACATGTGCCTTATTGCAATTTGCTATCAGTGAGACCTGTATCGCTTTTGCACCCTCTTTCTTCATCTTCTGCTCACTCCAAATCCCAACTGGATTGTCTGTGGAACCAAGATTAGTAAATAGCCACTTGCTAAgtaagggtaactcagattaacagacacccgtatacatagtaagtaaaaac #### Slc22a28_ID2246_5 --> 1 - 0 Original Alignment gTGGATGTCAGAGTCAGCTCGGTGGCTGATTGTGACCAACAAACCCCAGAAGGGCTTAAAGGAACTTAGAAAAGTTGCACACATGAATGGAATGAAGAATTCTGGAAATACCCTAACCATGGAG cattcattgttcccctcgatttatctctttctatcctattttaattttaggCGGACATCAGAGTCAGCTCAGTGGCTTATTGTGTCTAACAAGCCA---AAGGGCTCAAAGGAGCTCGGCAGAGTTGTGGACATGAATGGAATGAAGAACTCTCGAAATGCTCTCACCATGGATgtacccattatgggtggtaagccatccagccactacatgaaatatgaacc Alignment from CESAR gTGGATGTCAGAGTCAGCTCGGTGGCTGATTGTGACCAACAAACCCCAGAAGGGCTTAAAGGAACTTAGAAAAGTTGCACACATGAATGGAATGAAGAATTCTGGAAATACCCTAACCATGGAG cattcattgttcccctcgatttatctctttctatcctattttaattttaggCGGACATCAGAGTCAGCTCAGTGGCTTATTGTGTCTAACAAGCCA---AAGGGCTCAAAGGAGCTCGGCAGAGTTGTGGACATGAATGGAATGAAGAACTCTCGAAATGCTCTCACCATGGATgtacccattatgggtggtaagccatccagccactacatgaaatatgaacc Alignment from Spaln_aa2Genome GTGGATGTCAGAGTCAGCTCGGTGGCTGATTGTGACCAACAAACCCCAGAAGGGCTTAAAGGAACTTAGAAAAGTTGCACACATGAATGGAATGAAGAATTCTGGAAATACCCTAACCATGGAG cattcattgttcccctcgatttatctctttctatcctattttaattttagGCGGACATCAGAGTCAGCTCAGTGGCTTATTGTGTCTAACAAGCCA---AAGGGCTCAAAGGAGCTCGGCAGAGTTGTGGACATGAATGGAATGAAGAACTCTCGAAATGCTCTCACCATGGATgtacccattatgggtggtaagccatccagccactacatgaaatatgaacc Alignment from Spaln_nt2Genome GTGGATGTCAGAGTCAGCTCGGTGGCTGATTGTGACCAACAAACCCCAGAAGGGCTTAAAGGAACTTAGAAAAGTTGCACACATGAATGGAATGAAGAATTCTGGAAATACCCTAACCATGGAG cattcattgttcccctcgatttatctctttctatcctattttaattttagGCGGACATCAGAGTCAGCTCAGTGGCTTATTGTGTCTAACAAGCC---AAAGGGCTCAAAGGAGCTCGGCAGAGTTGTGGACATGAATGGAATGAAGAACTCTCGAAATGCTCTCACCATGGATgtacccattatgggtggtaagccatccagccactacatgaaatatgaacc Alignment from Pairagon GTGGATGTCAGAGTCAGCTCGGTGGCTGATTGTGACCAACAAACCCCAGAAGGGCTTAAAGGAACTTAGAAAAGTTGCACACATGAATGGAATGAAGAATTCTGGAAATACCCTAACCATGGAG cattcattgttcccctcgatttatctctttctatcctattttaattttagGCGGACATCAGAGTCAGCTCAGTGGCTTATTGTGTCTAACAAGCC---AAAGGGCTCAAAGGAGCTCGGCAGAGTTGTGGACATGAATGGAATGAAGAACTCTCGAAATGCTCTCACCATGGATgtacccattatgggtggtaagccatccagccactacatgaaatatgaacc Alignment from Exonerate_protein2genome GTGGATGTCAGAGTCAGCTCGGTGGCTGATTGTGACCAACAAACCCCAGAAGGGCTTAAAGGAACTTAGAAAAGTTGCACACATGAATGGAATGAAGAATTCTGGAAATACCCTAACCATGGAG cattcattgttcccctcgatttatctctttctatcctattttaattttagGCGGACATCAGAGTCAGCTCAGTGGCTTATTGTGTCTAACAAGCCA---AAGGGCTCAAAGGAGCTCGGCAGAGTTGTGGACATGAATGGAATGAAGAACTCTCGAAATGCTCTCACCATGGATgtacccattatgggtggtaagccatccagccactacatgaaatatgaacc Alignment from Exonerate_coding2genome GTGGATGTCAGAGTCAGCTCGGTGGCTGATTGTGACCAACAAACCCCAGAAGGGCTTAAAGGAACTTAGAAAAGTTGCACACATGAATGGAATGAAGAATTCTGGAAATACCCTAACCATGGAG cattcattgttcccctcgatttatctctttctatcctattttaattttagGCGGACATCAGAGTCAGCTCAGTGGCTTATTGTGTCTAACAAGCCA---AAGGGCTCAAAGGAGCTCGGCAGAGTTGTGGACATGAATGGAATGAAGAACTCTCGAAATGCTCTCACCATGGATgtacccattatgggtggtaagccatccagccactacatgaaatatgaacc Alignment from GeneWise GTGGATGTCAGAGTCAGCTCGGTGGCTGATTGTGACCAACAAACCCCAGAAGGGCTTAAAGGAACTTAGAAAAGTTGCACACATGAATGGAATGAAGAATTCTGGAAATACCCTAACCATGGAG cattcattgttcccctcgatttatctctttctatcctattttaattttagGCGGACATCAGAGTCAGCTCAGTGGCTTATTGTGTCTAACAAGCCA---AAGGGCTCAAAGGAGCTCGGCAGAGTTGTGGACATGAATGGAATGAAGAACTCTCGAAATGCTCTCACCATGGATgtacccattatgggtggtaagccatccagccactacatgaaatatgaacc #### Slc22a29_ID2255_8 --> 2 - 2 Original Alignment aaATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGGAGGAATTTCTTCTCTATGTGTGGGTGTTAGTCATCTTCATACAAATGAGCTACTCCCAACCACACTAag gatctggtaatagggagtctggctgcatccctctcccctctcttctgtagagATGCAAGCTCTATGTATTATCATGGCCACACTGGCAGGAGGAATTACTTCTCTGTGTGTGGGTGTCAGTCATCTTCATATCAATGAAGTACTCCCGGTCACACTAaggtgagcaactaacaagatgaatagccactactatcattatgaaaaaaata Alignment from CESAR aaATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGGAGGAATTTCTTCTCTATGTGTGGGTGTTAGTCATCTTCATACAAATGAGCTACTCCCAACCACACTAag gatctggtaatagggagtctggctgcatccctctcccctctcttctgtagagATGCAAGCTCTATGTATTATCATGGCCACACTGGCAGGAGGAATTACTTCTCTGTGTGTGGGTGTCAGTCATCTTCATATCAATGAAGTACTCCCGGTCACACTAaggtgagcaactaacaagatgaatagccactactatcattatgaaaaaaata Alignment from Spaln_aa2Genome AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGGAGGAATTTCTTCTCTATGTGTGGGTGTTAGTCATCTTCATACAAATGAGCTACTCCCAACCACACTAAG gatctggtaatagggagtctggctgcatccctctcccctctcttctgtagAGATGCAAGCTCTATGTATTATCATGGCCACACTGGCAGGAGGAATTACTTCTCTGTGTGTGGGTGTCAGTCATCTTCATATCAATGAAGTACTCCCGGTCACACTAAGgtgagcaactaacaagatgaatagccactactatcattatgaaaaaaata Alignment from Spaln_nt2Genome AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGGAGGAATTTCTTCTCTATGTGTGGGTGTTAGTCATCTTCATACAAATGAGCTACTCCCAACCACACTAAG gatctggtaatagggagtctggctgcatccctctcccctctcttctgtagAGATGCAAGCTCTATGTATTATCATGGCCACACTGGCAGGAGGAATTACTTCTCTGTGTGTGGGTGTCAGTCATCTTCATATCAATGAAGTACTCCCGGTCACACTAAGgtgagcaactaacaagatgaatagccactactatcattatgaaaaaaata Alignment from Pairagon AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGGAGGAATTTCTTCTCTATGTGTGGGTGTTAGTCATCTTCATACAAATGAGCTACTCCCAACCACACTAAG gatctggtaatagggagtctggctgcatccctctcccctctcttctgtagAGATGCAAGCTCTATGTATTATCATGGCCACACTGGCAGGAGGAATTACTTCTCTGTGTGTGGGTGTCAGTCATCTTCATATCAATGAAGTACTCCCGGTCACACTAAGgtgagcaactaacaagatgaatagccactactatcattatgaaaaaaata Alignment from Exonerate_protein2genome AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGGAGGAATTTCTTCTCTATGTGTGGGTGTTAGTCATCTTCATACAAATGAGCTACTCCCAACCACACTAAG gatctggtaatagggagtctggctgcatccctctcccctctcttctgtagAGATGCAAGCTCTATGTATTATCATGGCCACACTGGCAGGAGGAATTACTTCTCTGTGTGTGGGTGTCAGTCATCTTCATATCAATGAAGTACTCCCGGTCACACTAAGgtgagcaactaacaagatgaatagccactactatcattatgaaaaaaata Alignment from Exonerate_coding2genome AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGGAGGAATTTCTTCTCTATGTGTGGGTGTTAGTCATCTTCATACAAATGAGCTACTCCCAACCACACTAAG gatctggtaatagggagtctggctgcatccctctcccctctcttctgtagAGATGCAAGCTCTATGTATTATCATGGCCACACTGGCAGGAGGAATTACTTCTCTGTGTGTGGGTGTCAGTCATCTTCATATCAATGAAGTACTCCCGGTCACACTAAGgtgagcaactaacaagatgaatagccactactatcattatgaaaaaaata Alignment from GeneWise AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGGAGGAATTTCTTCTCTATGTGTGGGTGTTAGTCATCTTCATACAAATGAGCTACTCCCAACCACACTAAG gatctggtaatagggagtctggctgcatccctctcccctctcttctgtagAGATGCAAGCTCTATGTATTATCATGGCCACACTGGCAGGAGGAATTACTTCTCTGTGTGTGGGTGTCAGTCATCTTCATATCAATGAAGTACTCCCGGTCACACTAAGgtgagcaactaacaagatgaatagccactactatcattatgaaaaaaata #### Slc22a29_ID2256_7 --> 1 - 1 Original Alignment aCTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAg ctgcttgtatggttcaaaatgctgggtttcatgcttttcttcctcattagaCTTTTCTTTACAGTATCAATTATTGGCCTAGCAGTTCATCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTTATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCATATTGGCCGTAGAGTAACCTATCTGGTCCTCATGTCCCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAggtgagtatgtttgcactcacaaaagcatggtggctacagatggcacaata Alignment from CESAR aCTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAg ctgcttgtatggttcaaaatgctgggtttcatgcttttcttcctcattagaCTTTTCTTTACAGTATCAATTATTGGCCTAGCAGTTCATCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTTATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCATATTGGCCGTAGAGTAACCTATCTGGTCCTCATGTCCCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAggtgagtatgtttgcactcacaaaagcatggtggctacagatggcacaata Alignment from Spaln_aa2Genome ACTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAG ctgcttgtatggttcaaaatgctgggtttcatgcttttcttcctcattagACTTTTCTTTACAGTATCAATTATTGGCCTAGCAGTTCATCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTTATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCATATTGGCCGTAGAGTAACCTATCTGGTCCTCATGTCCCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAGgtgagtatgtttgcactcacaaaagcatggtggctacagatggcacaata Alignment from Spaln_nt2Genome ACTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAG ctgcttgtatggttcaaaatgctgggtttcatgcttttcttcctcattagACTTTTCTTTACAGTATCAATTATTGGCCTAGCAGTTCATCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTTATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCATATTGGCCGTAGAGTAACCTATCTGGTCCTCATGTCCCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAGgtgagtatgtttgcactcacaaaagcatggtggctacagatggcacaata Alignment from Pairagon ACTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAG ctgcttgtatggttcaaaatgctgggtttcatgcttttcttcctcattagACTTTTCTTTACAGTATCAATTATTGGCCTAGCAGTTCATCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTTATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCATATTGGCCGTAGAGTAACCTATCTGGTCCTCATGTCCCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAGgtgagtatgtttgcactcacaaaagcatggtggctacagatggcacaata Alignment from Exonerate_protein2genome ACTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAG ctgcttgtatggttcaaaatgctgggtttcatgcttttcttcctcattagACTTTTCTTTACAGTATCAATTATTGGCCTAGCAGTTCATCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTTATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCATATTGGCCGTAGAGTAACCTATCTGGTCCTCATGTCCCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAGgtgagtatgtttgcactcacaaaagcatggtggctacagatggcacaata Alignment from Exonerate_coding2genome ACTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAG ctgcttgtatggttcaaaatgctgggtttcatgcttttcttcctcattagACTTTTCTTTACAGTATCAATTATTGGCCTAGCAGTTCATCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTTATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCATATTGGCCGTAGAGTAACCTATCTGGTCCTCATGTCCCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAGgtgagtatgtttgcactcacaaaagcatggtggctacagatggcacaata Alignment from GeneWise ACTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAG ctgcttgtatggttcaaaatgctgggtttcatgcttttcttcctcattagACTTTTCTTTACAGTATCAATTATTGGCCTAGCAGTTCATCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTTATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCATATTGGCCGTAGAGTAACCTATCTGGTCCTCATGTCCCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAGgtgagtatgtttgcactcacaaaagcatggtggctacagatggcacaata #### Slc22a29_ID2258_5 --> 1 - 0 Original Alignment gTGGCTGTCAGAGTCAGCTCGGTGGCTGATTTTGATCAACAAACCCCAGAAGGGATTAAAGGAACTTAGAAAAGTTGCACACATGAATGGAATGAAGAATTCTGGAGACCTAACCATGGAG acattgaagaaataagacttagcttggtcctctctcttctttacctccaggTGGCTTTCTGAGTCAGCTCGCTGGCTGATTTTGATCAATAAACCCCAGAAGGGATTAAAGGAACTTAGAAAAGTTGCACATATGAATGGAATGAAAAATTCTGGGGACCTGACTATGGAGgtaagtatgttgaaacgtgaatcaactgcacacttatcatttgtacaggt Alignment from CESAR gTGGCTGTCAGAGTCAGCTCGGTGGCTGATTTTGATCAACAAACCCCAGAAGGGATTAAAGGAACTTAGAAAAGTTGCACACATGAATGGAATGAAGAATTCTGGAGACCTAACCATGGAG acattgaagaaataagacttagcttggtcctctctcttctttacctccaggTGGCTTTCTGAGTCAGCTCGCTGGCTGATTTTGATCAATAAACCCCAGAAGGGATTAAAGGAACTTAGAAAAGTTGCACATATGAATGGAATGAAAAATTCTGGGGACCTGACTATGGAGgtaagtatgttgaaacgtgaatcaactgcacacttatcatttgtacaggt Alignment from Spaln_aa2Genome GTGGCTGTCAGAGTCAGCTCGGTGGCTGATTTTGATCAACAAACCCCAGAAGGGATTAAAGGAACTTAGAAAAGTTGCACACATGAATGGAATGAAGAATTCTGGAGACCTAACCATGGAG acattgaagaaataagacttagcttggtcctctctcttctttacctccagGTGGCTTTCTGAGTCAGCTCGCTGGCTGATTTTGATCAATAAACCCCAGAAGGGATTAAAGGAACTTAGAAAAGTTGCACATATGAATGGAATGAAAAATTCTGGGGACCTGACTATGGAGgtaagtatgttgaaacgtgaatcaactgcacacttatcatttgtacaggt Alignment from Spaln_nt2Genome GTGGCTGTCAGAGTCAGCTCGGTGGCTGATTTTGATCAACAAACCCCAGAAGGGATTAAAGGAACTTAGAAAAGTTGCACACATGAATGGAATGAAGAATTCTGGAGACCTAACCATGGAG acattgaagaaataagacttagcttggtcctctctcttctttacctccagGTGGCTTTCTGAGTCAGCTCGCTGGCTGATTTTGATCAATAAACCCCAGAAGGGATTAAAGGAACTTAGAAAAGTTGCACATATGAATGGAATGAAAAATTCTGGGGACCTGACTATGGAGgtaagtatgttgaaacgtgaatcaactgcacacttatcatttgtacaggt Alignment from Pairagon GTGGCTGTCAGAGTCAGCTCGGTGGCTGATTTTGATCAACAAACCCCAGAAGGGATTAAAGGAACTTAGAAAAGTTGCACACATGAATGGAATGAAGAATTCTGGAGACCTAACCATGGAG acattgaagaaataagacttagcttggtcctctctcttctttacctccagGTGGCTTTCTGAGTCAGCTCGCTGGCTGATTTTGATCAATAAACCCCAGAAGGGATTAAAGGAACTTAGAAAAGTTGCACATATGAATGGAATGAAAAATTCTGGGGACCTGACTATGGAGgtaagtatgttgaaacgtgaatcaactgcacacttatcatttgtacaggt Alignment from Exonerate_protein2genome GTGGCTGTCAGAGTCAGCTCGGTGGCTGATTTTGATCAACAAACCCCAGAAGGGATTAAAGGAACTTAGAAAAGTTGCACACATGAATGGAATGAAGAATTCTGGAGACCTAACCATGGAG acattgaagaaataagacttagcttggtcctctctcttctttacctccagGTGGCTTTCTGAGTCAGCTCGCTGGCTGATTTTGATCAATAAACCCCAGAAGGGATTAAAGGAACTTAGAAAAGTTGCACATATGAATGGAATGAAAAATTCTGGGGACCTGACTATGGAGgtaagtatgttgaaacgtgaatcaactgcacacttatcatttgtacaggt Alignment from Exonerate_coding2genome GTGGCTGTCAGAGTCAGCTCGGTGGCTGATTTTGATCAACAAACCCCAGAAGGGATTAAAGGAACTTAGAAAAGTTGCACACATGAATGGAATGAAGAATTCTGGAGACCTAACCATGGAG acattgaagaaataagacttagcttggtcctctctcttctttacctccagGTGGCTTTCTGAGTCAGCTCGCTGGCTGATTTTGATCAATAAACCCCAGAAGGGATTAAAGGAACTTAGAAAAGTTGCACATATGAATGGAATGAAAAATTCTGGGGACCTGACTATGGAGgtaagtatgttgaaacgtgaatcaactgcacacttatcatttgtacaggt Alignment from GeneWise GTGGCTGTCAGAGTCAGCTCGGTGGCTGATTTTGATCAACAAACCCCAGAAGGGATTAAAGGAACTTAGAAAAGTTGCACACATGAATGGAATGAAGAATTCTGGAGACCTAACCATGGAG acattgaagaaataagacttagcttggtcctctctcttctttacctccagGTGGCTTTCTGAGTCAGCTCGCTGGCTGATTTTGATCAATAAACCCCAGAAGGGATTAAAGGAACTTAGAAAAGTTGCACATATGAATGGAATGAAAAATTCTGGGGACCTGACTATGGAGgtaagtatgttgaaacgtgaatcaactgcacacttatcatttgtacaggt #### Slc22a6_ID2287_8 --> 2 - 2 Original Alignment gcCATACAATCATTCGCACATCCCTGGCTGTACTAGGGAAAGGCTGTCTGGCTTCCTCTTTCAACTGCATCTTCCTGTACACCGGAGAGCTGTACCCCACAATGATTcg tactggcttaccgcgtacgatctatgttagtaaatattttcttttaacagggCATATGCTCATTCAGACATCTCTAGCCGTCTTAGGGAAAGGCTGTCTGTCTTCCACCTTCAACTGTATCTACCTTTACAGTGGAGAGCTATACCCG---ATGATTcggtaagtaaggcccttcaagggcaggtgttgcaatccaggtaacagaagtt Alignment from CESAR gcCATACAATCATTCGCACATCCCTGGCTGTACTAGGGAAAGGCTGTCTGGCTTCCTCTTTCAACTGCATCTTCCTGTACACCGGAGAGCTGTACCCCACAATGATTcg tactggcttaccgcgtacgatctatgttagtaaatattttcttttaacagggCATATGCTCATTCAGACATCTCTAGCCGTCTTAGGGAAAGGCTGTCTGTCTTCCACCTTCAACTGTATCTACCTTTACAGTGGAGAGCTATACCCG---ATGATTcggtaagtaaggcccttcaagggcaggtgttgcaatccaggtaacagaagtt Alignment from Spaln_aa2Genome GCCATACAATCATTCGCACATCCCTGGCTGTACTAGGGAAAGGCTGTCTGGCTTCCTCTTTCAACTGCATCTTCCTGTACACCGGAGAGCTGTACCCCACAATGATTCG tactggcttaccgcgtacgatctatgttagtaaatattttcttttaacagGGCATATGCTCATTCAGACATCTCTAGCCGTCTTAGGGAAAGGCTGTCTGTCTTCCACCTTCAACTGTATCTACCTTTACAGTGGAGAGCTATACCCG---ATGATTCGgtaagtaaggcccttcaagggcaggtgttgcaatccaggtaacagaagtt Alignment from Spaln_nt2Genome GCCATACAATCATTCGCACATCCCTGGCTGTACTAGGGAAAGGCTGTCTGGCTTCCTCTTTCAACTGCATCTTCCTGTACACCGGAGAGCTGTACCCCACAATGATTCG tactggcttaccgcgtacgatctatgttagtaaatattttcttttaacagGGCATATGCTCATTCAGACATCTCTAGCCGTCTTAGGGAAAGGCTGTCTGTCTTCCACCTTCAACTGTATCTACCTTTACAGTGGAGAGCTATACC---CGATGATTCGgtaagtaaggcccttcaagggcaggtgttgcaatccaggtaacagaagtt Alignment from Pairagon GCCATACAATCATTCGCACATCCCTGGCTGTACTAGGGAAAGGCTGTCTGGCTTCCTCTTTCAACTGCATCTTCCTGTACACCGGAGAGCTGTACCCCACAATGATTCG tactggcttaccgcgtacgatctatgttagtaaatattttcttttaacagGGCATATGCTCATTCAGACATCTCTAGCCGTCTTAGGGAAAGGCTGTCTGTCTTCCACCTTCAACTGTATCTACCTTTACAGTGGAGAGCTATACC---CGATGATTCGgtaagtaaggcccttcaagggcaggtgttgcaatccaggtaacagaagtt Alignment from Exonerate_protein2genome GCCATACAATCATTCGCACATCCCTGGCTGTACTAGGGAAAGGCTGTCTGGCTTCCTCTTTCAACTGCATCTTCCTGTACACCGGAGAGCTGTACCCCACAATGATTCG tactggcttaccgcgtacgatctatgttagtaaatattttcttttaacagGGCATATGCTCATTCAGACATCTCTAGCCGTCTTAGGGAAAGGCTGTCTGTCTTCCACCTTCAACTGTATCTACCTTTACAGTGGAGAGCTATACCCG---ATGATTCGgtaagtaaggcccttcaagggcaggtgttgcaatccaggtaacagaagtt Alignment from Exonerate_coding2genome GCCATACAATCATTCGCACATCCCTGGCTGTACTAGGGAAAGGCTGTCTGGCTTCCTCTTTCAACTGCATCTTCCTGTACACCGGAGAGCTGTACCCCACAATGATTCG tactggcttaccgcgtacgatctatgttagtaaatattttcttttaacagGGCATATGCTCATTCAGACATCTCTAGCCGTCTTAGGGAAAGGCTGTCTGTCTTCCACCTTCAACTGTATCTACCTTTACAGTGGAGAGCTATACCCG---ATGATTCGgtaagtaaggcccttcaagggcaggtgttgcaatccaggtaacagaagtt Alignment from GeneWise GCCATACAATCATTCGCACATCCCTGGCTGTACTAGGGAAAGGCTGTCTGGCTTCCTCTTTCAACTGCATCTTCCTGTACACCGGAGAGCTGTACCCCACAATGATTCG tactggcttaccgcgtacgatctatgttagtaaatattttcttttaacagGGCATATGCTCATTCAGACATCTCTAGCCGTCTTAGGGAAAGGCTGTCTGTCTTCCACCTTCAACTGTATCTACCTTTACAGTGGAGAGCTATACCCG---ATGATTCGgtaagtaaggcccttcaagggcaggtgttgcaatccaggtaacagaagtt #### Slc22a6_ID2288_9 --> 1 - 2 Original Alignment gCAGACGGGCCTGGGCATGGGCAGCACCATGGCCCGGGTGGGCAGCATAGTGAGCCCACTGATAAGCATGACTGCCGAGTTCTACCCCTCCATACCTCTCTTCATCTTCGGCGCTGTCCCCGTGGCCGCCAGCGCTGTCACTGCCCTGCTGCCAGAGACCTTGGGCCAGCCGCTGCCTGATACAGTGCAGGACCTGAAGAGCag aatataccccactggcatctagagctcctcactataatctctctgcttagaCAGACAGGCTTGGGGATGGGCAGTACAATGGCTCAGGTGGCCAGCATATTGAGCCCACTAATAAGTATGACTGCTGAGTTCTACCCTTCCATACCTCTCTTTATCTATGGAGCTGTCCCTGTAGTGGCAAGTACAGTCACTGCTCTTCTGCCA------TTAGGCCAGCCACTGCCTGATACAGTGCAGGACTTGAAAAGCaagtacagatcccctatccaatagctaatcctggtcttcaaggggggttacc Alignment from CESAR gCAGACGGGCCTGGGCATGGGCAGCACCATGGCCCGGGTGGGCAGCATAGTGAGCCCACTGATAAGCATGACTGCCGAGTTCTACCCCTCCATACCTCTCTTCATCTTCGGCGCTGTCCCCGTGGCCGCCAGCGCTGTCACTGCCCTGCTGCCAGAGACCTTGGGCCAGCCGCTGCCTGATACAGTGCAGGACCTGAAGAGCag aatataccccactggcatctagagctcctcactataatctctctgcttagaCAGACAGGCTTGGGGATGGGCAGTACAATGGCTCAGGTGGCCAGCATATTGAGCCCACTAATAAGTATGACTGCTGAGTTCTACCCTTCCATACCTCTCTTTATCTATGGAGCTGTCCCTGTAGTGGCAAGTACAGTCACTGCTCTTCTGCCA------TTAGGCCAGCCACTGCCTGATACAGTGCAGGACTTGAAAAGCaagtacagatcccctatccaatagctaatcctggtcttcaaggggggttacc Alignment from Spaln_aa2Genome GCAGACGGGCCTGGGCATGGGCAGCACCATGGCCCGGGTGGGCAGCATAGTGAGCCCACTGATAAGCATGACTGCCGAGTTCTACCCCTCCATACCTCTCTTCATCTTCGGCGCTGTCCCCGTGGCCGCCAGCGCTGTCACTGCCCTGCTGCCAGAGACCTTGGGCCAGCCGCTGCCTGATACAGTGCAGGACCTGAAGAGCAG aatataccccactggcatctagagctcctcactataatctctctgcttagACAGACAGGCTTGGGGATGGGCAGTACAATGGCTCAGGTGGCCAGCATATTGAGCCCACTAATAAGTATGACTGCTGAGTTCTACCCTTCCATACCTCTCTTTATCTATGGAGCTGTCCCTGTAGTGGCAAGTACAGTCACTGCTCTTCTGCCA------TTAGGCCAGCCACTGCCTGATACAGTGCAGGACTTGAAAAGCAAgtacagatcccctatccaatagctaatcctggtcttcaaggggggttacc Alignment from Spaln_nt2Genome GCAGACGGGCCTGGGCATGGGCAGCACCATGGCCCGGGTGGGCAGCATAGTGAGCCCACTGATAAGCATGACTGCCGAGTTCTACCCCTCCATACCTCTCTTCATCTTCGGCGCTGTCCCCGTGGCCGCCAGCGCTGTCACTGCCCTGCTGCCAGAGACCTTGGGCCAGCCGCTGCCTGATACAGTGCAGGACCTGAAGAGCAG aatataccccactggcatctagagctcctcactataatctctctgcttagACAGACAGGCTTGGGGATGGGCAGTACAATGGCTCAGGTGGCCAGCATATTGAGCCCACTAATAAGTATGACTGCTGAGTTCTACCCTTCCATACCTCTCTTTATCTATGGAGCTGTCCCTGTAGTGGCAAGTACAGTCACTGCTCTTCTGCCA------TTAGGCCAGCCACTGCCTGATACAGTGCAGGACTTGAAAAGCAAgtacagatcccctatccaatagctaatcctggtcttcaaggggggttacc Alignment from Pairagon GCAGACGGGCCTGGGCATGGGCAGCACCATGGCCCGGGTGGGCAGCATAGTGAGCCCACTGATAAGCATGACTGCCGAGTTCTACCCCTCCATACCTCTCTTCATCTTCGGCGCTGTCCCCGTGGCCGCCAGCGCTGTCACTGCCCTGCTGCCAGAGACCTTGGGCCAGCCGCTGCCTGATACAGTGCAGGACCTGAAGAGCAG aatataccccactggcatctagagctcctcactataatctctctgcttagACAGACAGGCTTGGGGATGGGCAGTACAATGGCTCAGGTGGCCAGCATATTGAGCCCACTAATAAGTATGACTGCTGAGTTCTACCCTTCCATACCTCTCTTTATCTATGGAGCTGTCCCTGTAGTGGCAAGTACAGTCACTGCTCTTCTGCCA------TTAGGCCAGCCACTGCCTGATACAGTGCAGGACTTGAAAAGCAAgtacagatcccctatccaatagctaatcctggtcttcaaggggggttacc Alignment from Exonerate_protein2genome GCAGACGGGCCTGGGCATGGGCAGCACCATGGCCCGGGTGGGCAGCATAGTGAGCCCACTGATAAGCATGACTGCCGAGTTCTACCCCTCCATACCTCTCTTCATCTTCGGCGCTGTCCCCGTGGCCGCCAGCGCTGTCACTGCCCTGCTGCCAGAGACCTTGGGCCAGCCGCTGCCTGATACAGTGCAGGACCTGAAGAGCAG aatataccccactggcatctagagctcctcactataatctctctgcttagACAGACAGGCTTGGGGATGGGCAGTACAATGGCTCAGGTGGCCAGCATATTGAGCCCACTAATAAGTATGACTGCTGAGTTCTACCCTTCCATACCTCTCTTTATCTATGGAGCTGTCCCTGTAGTGGCAAGTACAGTCACTGCTCTTCTGCCA------TTAGGCCAGCCACTGCCTGATACAGTGCAGGACTTGAAAAGCAAgtacagatcccctatccaatagctaatcctggtcttcaaggggggttacc Alignment from Exonerate_coding2genome GCAGACGGGCCTGGGCATGGGCAGCACCATGGCCCGGGTGGGCAGCATAGTGAGCCCACTGATAAGCATGACTGCCGAGTTCTACCCCTCCATACCTCTCTTCATCTTCGGCGCTGTCCCCGTGGCCGCCAGCGCTGTCACTGCCCTGCTGCCAGAGACCTTGGGCCAGCCGCTGCCTGATACAGTGCAGGACCTGAAGAGCAG aatataccccactggcatctagagctcctcactataatctctctgcttagACAGACAGGCTTGGGGATGGGCAGTACAATGGCTCAGGTGGCCAGCATATTGAGCCCACTAATAAGTATGACTGCTGAGTTCTACCCTTCCATACCTCTCTTTATCTATGGAGCTGTCCCTGTAGTGGCAAGTACAGTCACTGCTCTTCTGCCA------TTAGGCCAGCCACTGCCTGATACAGTGCAGGACTTGAAAAGCAAgtacagatcccctatccaatagctaatcctggtcttcaaggggggttacc Alignment from GeneWise GCAGACGGGCCTGGGCATGGGCAGCACCATGGCCCGGGTGGGCAGCATAGTGAGCCCACTGATAAGCATGACTGCCGAGTTCTACCCCTCCATACCTCTCTTCATCTTCGGCGCTGTCCCCGTGGCCGCCAGCGCTGTCACTGCCCTGCTGCCAGAGACCTTGGGCCAGCCGCTGCCTGATACAGTGCAGGACCTGAAGAGCAGGAGCAGA aatataccccactggcatctagagctcctcactataatctctctgcttagACAGACAGGCTTGGGGATGGGCAGTACAATGGCTCAGGTGGCCAGCATATTGAGCCCACTAATAAGTATGACTGCTGAGTTCTACCCTTCCATACCTCTCTTTATCTATGGAGCTGTCCCTGTAGTGGCAAGTACAGTCACTGCTCTTCTGCCA------TTAGGCCAGCCACTGCCTGATACAGTGCAGGACTTGAAAAGCAAGTACAGAtcccctatccaatagctaatcctggtcttcaaggggggttacc #### Slc22a8_ID2269_2 --> 0 - 2 Original Alignment TGGGACTTGGTATGCGGCTCCAACAAACTGAAGGAGATGGCACAGTCAGTCTTCATGGCAGGTATACTGGTTGGAGGACCTGTGTTTGGAGAACTGTCAGACag actgcactgaagtcaacttgtctgagaacccctttgttctgctcttgtagTGGGATTCAGTATGCGGCTTCAACAAACTGAAAGAGATGGCACAGTCAGTCTTCATGGCAGGTATACTGGTTGGCGGACCTGTGTTTGGAGAACTGTCAGACaggtagggtgtgaaggcctgaatttgaacaggatgtatcacagtaagtcagc Alignment from CESAR TGGGACTTGGTATGCGGCTCCAACAAACTGAAGGAGATGGCACAGTCAGTCTTCATGGCAGGTATACTGGTTGGAGGACCTGTGTTTGGAGAACTGTCAGACag actgcactgaagtcaacttgtctgagaacccctttgttctgctcttgtagTGGGATTCAGTATGCGGCTTCAACAAACTGAAAGAGATGGCACAGTCAGTCTTCATGGCAGGTATACTGGTTGGCGGACCTGTGTTTGGAGAACTGTCAGACaggtagggtgtgaaggcctgaatttgaacaggatgtatcacagtaagtcagc Alignment from Spaln_aa2Genome TGGGACTTGGTATGCGGCTCCAACAAACTGAAGGAGATGGCACAGTCAGTCTTCATGGCAGGTATACTGGTTGGAGGACCTGTGTTTGGAGAACTGTCAGACAGGTTTGGCCGCAAG actgcactgaagtcaacttgtctgagaacccctttgttctgctcttgtagTGGGATTCAGTATGCGGCTTCAACAAACTGAAAGAGATGGCACAGTCAGTCTTCATGGCAGGTATACTGGTTGGCGGACCTGTGTTTGGAGAACTGTCAGACAGGTAGGGTGTGAAGgcctgaatttgaacaggatgtatcacagtaagtcagc Alignment from Spaln_nt2Genome TGGGACTTGGTATGCGGCTCCAACAAACTGAAGGAGATGGCACAGTCAGTCTTCATGGCAGGTATACTGGTTGGAGGACCTGTGTTTGGAGAACTGTCAGACAG actgcactgaagtcaacttgtctgagaacccctttgttctgctcttgtagTGGGATTCAGTATGCGGCTTCAACAAACTGAAAGAGATGGCACAGTCAGTCTTCATGGCAGGTATACTGGTTGGCGGACCTGTGTTTGGAGAACTGTCAGACAGgtagggtgtgaaggcctgaatttgaacaggatgtatcacagtaagtcagc Alignment from Pairagon TGGGACTTGGTATGCGGCTCCAACAAACTGAAGGAGATGGCACAGTCAGTCTTCATGGCAGGTATACTGGTTGGAGGACCTGTGTTTGGAGAACTGTCAGACAG actgcactgaagtcaacttgtctgagaacccctttgttctgctcttgtagTGGGATTCAGTATGCGGCTTCAACAAACTGAAAGAGATGGCACAGTCAGTCTTCATGGCAGGTATACTGGTTGGCGGACCTGTGTTTGGAGAACTGTCAGACAGgtagggtgtgaaggcctgaatttgaacaggatgtatcacagtaagtcagc Alignment from Exonerate_protein2genome TGGGACTTGGTATGCGGCTCCAACAAACTGAAGGAGATGGCACAGTCAGTCTTCATGGCAGGTATACTGGTTGGAGGACCTGTGTTTGGAGAACTGTCAGACAG actgcactgaagtcaacttgtctgagaacccctttgttctgctcttgtagTGGGATTCAGTATGCGGCTTCAACAAACTGAAAGAGATGGCACAGTCAGTCTTCATGGCAGGTATACTGGTTGGCGGACCTGTGTTTGGAGAACTGTCAGACAGgtagggtgtgaaggcctgaatttgaacaggatgtatcacagtaagtcagc Alignment from Exonerate_coding2genome TGGGACTTGGTATGCGGCTCCAACAAACTGAAGGAGATGGCACAGTCAGTCTTCATGGCAGGTATACTGGTTGGAGGACCTGTGTTTGGAGAACTGTCAGACAG actgcactgaagtcaacttgtctgagaacccctttgttctgctcttgtagTGGGATTCAGTATGCGGCTTCAACAAACTGAAAGAGATGGCACAGTCAGTCTTCATGGCAGGTATACTGGTTGGCGGACCTGTGTTTGGAGAACTGTCAGACAGgtagggtgtgaaggcctgaatttgaacaggatgtatcacagtaagtcagc Alignment from GeneWise TGGGACTTGGTATGCGGCTCCAACAAACTGAAGGAGATGGCACAGTCAGTCTTCATGGCAGGTATACTGGTTGGAGGACCTGTGTTTGGAGAACTGTCAGACAG actgcactgaagtcaacttgtctgagaacccctttgttctgctcttgtagTGGGATTCAGTATGCGGCTTCAACAAACTGAAAGAGATGGCACAGTCAGTCTTCATGGCAGGTATACTGGTTGGCGGACCTGTGTTTGGAGAACTGTCAGACAGgtagggtgtgaaggcctgaatttgaacaggatgtatcacagtaagtcagc #### Slc25a28_ID8783_2 --> 0 - 1 Original Alignment ACCCGGATGCAGAGCCTACAGCCTGACCCAGCCGCCCGCTATCGGAACGTGTTGGAGGCTCTCTGGAGAATCATGAGGACAGAGGGCCTGTGGAGGCCCATGCGGGGGCTGAACGTCACAGCAACAGGCGCGGGGCCTGCCCACGCCCTCTATTTTGCCTGCTACGAAAAGTTAAAAAAGACATTGAGTGACGTAATCCACCCAGGGGGCAATAGCCATATTGCCAATg ctaggaattaaattaagtcaccactttatttctctcttggtctcttacagACTCGGATGCAGAGCCTACAGCTTGACCCAGCCGCTCGCTATCGTAATGTACTGGAGGCTCTGTGGAGAATCATGAGGACCGAGGGCCTGTGGAGGCCCATGCGTGGGCTGAATGTCACAGCAACAGGTGCAGCACCTGCCCATGCCCTATACTTTGCCTGCTACAAAAAGTTAAAAAAGACATTGAGTGATGTAATCCACCCAGGGGGCAATAGCCATATTGCTAATggtaaatttcccttcatcggtgatcaactttaaatgtgtgctactgtcagt Alignment from CESAR ACCCGGATGCAGAGCCTACAGCCTGACCCAGCCGCCCGCTATCGGAACGTGTTGGAGGCTCTCTGGAGAATCATGAGGACAGAGGGCCTGTGGAGGCCCATGCGGGGGCTGAACGTCACAGCAACAGGCGCGGGGCCTGCCCACGCCCTCTATTTTGCCTGCTACGAAAAGTTAAAAAAGACATTGAGTGACGTAATCCACCCAGGGGGCAATAGCCATATTGCCAATg ctaggaattaaattaagtcaccactttatttctctcttggtctcttacagACTCGGATGCAGAGCCTACAGCTTGACCCAGCCGCTCGCTATCGTAATGTACTGGAGGCTCTGTGGAGAATCATGAGGACCGAGGGCCTGTGGAGGCCCATGCGTGGGCTGAATGTCACAGCAACAGGTGCAGCACCTGCCCATGCCCTATACTTTGCCTGCTACAAAAAGTTAAAAAAGACATTGAGTGATGTAATCCACCCAGGGGGCAATAGCCATATTGCTAATggtaaatttcccttcatcggtgatcaactttaaatgtgtgctactgtcagt Alignment from Spaln_aa2Genome ACCCGGATGCAGAGCCTACAGCCTGACCCAGCCGCCCGCTATCGGAACGTGTTGGAGGCTCTCTGGAGAATCATGAGGACAGAGGGCCTGTGGAGGCCCATGCGGGGGCTGAACGTCACAGCAACAGGCGCGGGGCCTGCCCACGCCCTCTATTTTGCCTGCTACGAAAAGTTAAAAAAGACATTGAGTGACGTAATCCACCCAGGGGGCAATAGCCATATTGCCAATG ctaggaattaaattaagtcaccactttatttctctcttggtctcttacagACTCGGATGCAGAGCCTACAGCTTGACCCAGCCGCTCGCTATCGTAATGTACTGGAGGCTCTGTGGAGAATCATGAGGACCGAGGGCCTGTGGAGGCCCATGCGTGGGCTGAATGTCACAGCAACAGGTGCAGCACCTGCCCATGCCCTATACTTTGCCTGCTACAAAAAGTTAAAAAAGACATTGAGTGATGTAATCCACCCAGGGGGCAATAGCCATATTGCTAATGgtaaatttcccttcatcggtgatcaactttaaatgtgtgctactgtcagt Alignment from Spaln_nt2Genome ACCCGGATGCAGAGCCTACAGCCTGACCCAGCCGCCCGCTATCGGAACGTGTTGGAGGCTCTCTGGAGAATCATGAGGACAGAGGGCCTGTGGAGGCCCATGCGGGGGCTGAACGTCACAGCAACAGGCGCGGGGCCTGCCCACGCCCTCTATTTTGCCTGCTACGAAAAGTTAAAAAAGACATTGAGTGACGTAATCCACCCAGGGGGCAATAGCCATATTGCCAATG ctaggaattaaattaagtcaccactttatttctctcttggtctcttacagACTCGGATGCAGAGCCTACAGCTTGACCCAGCCGCTCGCTATCGTAATGTACTGGAGGCTCTGTGGAGAATCATGAGGACCGAGGGCCTGTGGAGGCCCATGCGTGGGCTGAATGTCACAGCAACAGGTGCAGCACCTGCCCATGCCCTATACTTTGCCTGCTACAAAAAGTTAAAAAAGACATTGAGTGATGTAATCCACCCAGGGGGCAATAGCCATATTGCTAATGgtaaatttcccttcatcggtgatcaactttaaatgtgtgctactgtcagt Alignment from Pairagon ACCCGGATGCAGAGCCTACAGCCTGACCCAGCCGCCCGCTATCGGAACGTGTTGGAGGCTCTCTGGAGAATCATGAGGACAGAGGGCCTGTGGAGGCCCATGCGGGGGCTGAACGTCACAGCAACAGGCGCGGGGCCTGCCCACGCCCTCTATTTTGCCTGCTACGAAAAGTTAAAAAAGACATTGAGTGACGTAATCCACCCAGGGGGCAATAGCCATATTGCCAATG ctaggaattaaattaagtcaccactttatttctctcttggtctcttacagACTCGGATGCAGAGCCTACAGCTTGACCCAGCCGCTCGCTATCGTAATGTACTGGAGGCTCTGTGGAGAATCATGAGGACCGAGGGCCTGTGGAGGCCCATGCGTGGGCTGAATGTCACAGCAACAGGTGCAGCACCTGCCCATGCCCTATACTTTGCCTGCTACAAAAAGTTAAAAAAGACATTGAGTGATGTAATCCACCCAGGGGGCAATAGCCATATTGCTAATGgtaaatttcccttcatcggtgatcaactttaaatgtgtgctactgtcagt Alignment from Exonerate_protein2genome ACCCGGATGCAGAGCCTACAGCCTGACCCAGCCGCCCGCTATCGGAACGTGTTGGAGGCTCTCTGGAGAATCATGAGGACAGAGGGCCTGTGGAGGCCCATGCGGGGGCTGAACGTCACAGCAACAGGCGCGGGGCCTGCCCACGCCCTCTATTTTGCCTGCTACGAAAAGTTAAAAAAGACATTGAGTGACGTAATCCACCCAGGGGGCAATAGCCATATTGCCAATG ctaggaattaaattaagtcaccactttatttctctcttggtctcttacagACTCGGATGCAGAGCCTACAGCTTGACCCAGCCGCTCGCTATCGTAATGTACTGGAGGCTCTGTGGAGAATCATGAGGACCGAGGGCCTGTGGAGGCCCATGCGTGGGCTGAATGTCACAGCAACAGGTGCAGCACCTGCCCATGCCCTATACTTTGCCTGCTACAAAAAGTTAAAAAAGACATTGAGTGATGTAATCCACCCAGGGGGCAATAGCCATATTGCTAATGgtaaatttcccttcatcggtgatcaactttaaatgtgtgctactgtcagt Alignment from Exonerate_coding2genome ACCCGGATGCAGAGCCTACAGCCTGACCCAGCCGCCCGCTATCGGAACGTGTTGGAGGCTCTCTGGAGAATCATGAGGACAGAGGGCCTGTGGAGGCCCATGCGGGGGCTGAACGTCACAGCAACAGGCGCGGGGCCTGCCCACGCCCTCTATTTTGCCTGCTACGAAAAGTTAAAAAAGACATTGAGTGACGTAATCCACCCAGGGGGCAATAGCCATATTGCCAATG ctaggaattaaattaagtcaccactttatttctctcttggtctcttacagACTCGGATGCAGAGCCTACAGCTTGACCCAGCCGCTCGCTATCGTAATGTACTGGAGGCTCTGTGGAGAATCATGAGGACCGAGGGCCTGTGGAGGCCCATGCGTGGGCTGAATGTCACAGCAACAGGTGCAGCACCTGCCCATGCCCTATACTTTGCCTGCTACAAAAAGTTAAAAAAGACATTGAGTGATGTAATCCACCCAGGGGGCAATAGCCATATTGCTAATGgtaaatttcccttcatcggtgatcaactttaaatgtgtgctactgtcagt Alignment from GeneWise ACCCGGATGCAGAGCCTACAGCCTGACCCAGCCGCCCGCTATCGGAACGTGTTGGAGGCTCTCTGGAGAATCATGAGGACAGAGGGCCTGTGGAGGCCCATGCGGGGGCTGAACGTCACAGCAACAGGCGCGGGGCCTGCCCACGCCCTCTATTTTGCCTGCTACGAAAAGTTAAAAAAGACATTGAGTGACGTAATCCACCCAGGGGGCAATAGCCATATTGCCAATG ctaggaattaaattaagtcaccactttatttctctcttggtctcttacagACTCGGATGCAGAGCCTACAGCTTGACCCAGCCGCTCGCTATCGTAATGTACTGGAGGCTCTGTGGAGAATCATGAGGACCGAGGGCCTGTGGAGGCCCATGCGTGGGCTGAATGTCACAGCAACAGGTGCAGCACCTGCCCATGCCCTATACTTTGCCTGCTACAAAAAGTTAAAAAAGACATTGAGTGATGTAATCCACCCAGGGGGCAATAGCCATATTGCTAATGgtaaatttcccttcatcggtgatcaactttaaatgtgtgctactgtcagt #### Slc25a45_ID1292_3 --> 0 - 0 Original Alignment GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgacttgatcattatgggagcactgcactctaattgccccgtctccccagGTGCGCTTACAAACCCAAAGCACATATCGGGGCATTGTTGACTGTGTTGCTAAGACATATCGTCATCAATCAgtaggacccatccttgctataacactatttttgcccttaagagtgtctga Alignment from CESAR GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgacttgatcattatgggagcactgcactctaattgccccgtctccccagGTGCGCTTACAAACCCAAAGCACATATCGGGGCATTGTTGACTGTGTTGCTAAGACATATCGTCATCAATCAgtaggacccatccttgctataacactatttttgcccttaagagtgtctga Alignment from Spaln_aa2Genome GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgacttgatcattatgggagcactgcactctaattgccccgtctccccagGTGCGCTTACAAACCCAAAGCACATATCGGGGCATTGTTGACTGTGTTGCTAAGACATATCGTCATCAATCAgtaggacccatccttgctataacactatttttgcccttaagagtgtctga Alignment from Spaln_nt2Genome GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgacttgatcattatgggagcactgcactctaattgccccgtctccccagGTGCGCTTACAAACCCAAAGCACATATCGGGGCATTGTTGACTGTGTTGCTAAGACATATCGTCATCAATCAgtaggacccatccttgctataacactatttttgcccttaagagtgtctga Alignment from Pairagon GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgacttgatcattatgggagcactgcactctaattgccccgtctccccagGTGCGCTTACAAACCCAAAGCACATATCGGGGCATTGTTGACTGTGTTGCTAAGACATATCGTCATCAATCAgtaggacccatccttgctataacactatttttgcccttaagagtgtctga Alignment from Exonerate_protein2genome GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgacttgatcattatgggagcactgcactctaattgccccgtctccccagGTGCGCTTACAAACCCAAAGCACATATCGGGGCATTGTTGACTGTGTTGCTAAGACATATCGTCATCAATCAgtaggacccatccttgctataacactatttttgcccttaagagtgtctga Alignment from Exonerate_coding2genome tgacttgatcattatgggagcactgcactctaattgccccgtctccccaggtgcgcttacaaacccaaagcacatatcggggcattgttgactgtgttgctaagacatatcgtcatcaatcagtaggacccatccttgctataacactatttttgcccttaagagtgtctga Alignment from GeneWise GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA tgacttgatcattatgggagcactgcactctaattgccccgtctccccagGTGCGCTTACAAACCCAAAGCACATATCGGGGCATTGTTGACTGTGTTGCTAAGACATATCGTCATCAATCAgtaggacccatccttgctataacactatttttgcccttaagagtgtctga #### Slc29a2_ID788_2 --> 1 - 0 Original Alignment cTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG tgattgatgtcctgcagtaggaaaggtgtttttaaaaaatgtctttatagcTACCACCTGGCTGGCATCAGCTTTTTCATTCTGGGACTAGGCACCCTTCTCCCCTGGAATTTCTTCATTACTGCGATCCCAgtaagttagtgcattataaatgctatgaaccaattcccctatcacacttc Alignment from CESAR cTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG tgattgatgtcctgcagtaggaaaggtgtttttaaaaaatgtctttatagcTACCACCTGGCTGGCATCAGCTTTTTCATTCTGGGACTAGGCACCCTTCTCCCCTGGAATTTCTTCATTACTGCGATCCCAgtaagttagtgcattataaatgctatgaaccaattcccctatcacacttc Alignment from Spaln_aa2Genome CTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG tgattgatgtcctgcagtaggaaaggtgtttttaaaaaatgtctttatagCTACCACCTGGCTGGCATCAGCTTTTTCATTCTGGGACTAGGCACCCTTCTCCCCTGGAATTTCTTCATTACTGCGATCCCAgtaagttagtgcattataaatgctatgaaccaattcccctatcacacttc Alignment from Spaln_nt2Genome CTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG tgattgatgtcctgcagtaggaaaggtgtttttaaaaaatgtctttatagCTACCACCTGGCTGGCATCAGCTTTTTCATTCTGGGACTAGGCACCCTTCTCCCCTGGAATTTCTTCATTACTGCGATCCCAgtaagttagtgcattataaatgctatgaaccaattcccctatcacacttc Alignment from Pairagon CTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG tgattgatgtcctgcagtaggaaaggtgtttttaaaaaatgtctttatagCTACCACCTGGCTGGCATCAGCTTTTTCATTCTGGGACTAGGCACCCTTCTCCCCTGGAATTTCTTCATTACTGCGATCCCAgtaagttagtgcattataaatgctatgaaccaattcccctatcacacttc Alignment from Exonerate_protein2genome CTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG tgattgatgtcctgcagtaggaaaggtgtttttaaaaaatgtctttatagCTACCACCTGGCTGGCATCAGCTTTTTCATTCTGGGACTAGGCACCCTTCTCCCCTGGAATTTCTTCATTACTGCGATCCCAgtaagttagtgcattataaatgctatgaaccaattcccctatcacacttc Alignment from Exonerate_coding2genome AGCTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG tgattgatgtcctgcagtaggaaaggtgtttttaaaaaatgtctttatAGCTACCACCTGGCTGGCATCAGCTTTTTCATTCTGGGACTAGGCACCCTTCTCCCCTGGAATTTCTTCATTACTGCGATCCCAgtaagttagtgcattataaatgctatgaaccaattcccctatcacacttc Alignment from GeneWise AGCTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTTCTCCCCTGGAACTTCTTCATTACCGCCATCCCG tgattgatgtcctgcagtaggaaaggtgtttttaaaaaatgtctttatAGCTACCACCTGGCTGGCATCAGCTTTTTCATTCTGGGACTAGGCACCCTTCTCCCCTGGAATTTCTTCATTACTGCGATCCCAgtaagttagtgcattataaatgctatgaaccaattcccctatcacacttc #### Slc29a2_ID789_3 --> 0 - 2 Original Alignment TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAG---tg tgggggttacttttgagaagctccctgtgacttctttttttaatttctagTACCTCCGGGGACAGTTGGCAGGTACTAACAGCAGTGCTGAGACCATCAGCACAAACCACACCAGCCCCACCGATGCATCGAATGTCAACAATTGGGTGACACTGCTATCGCAGTTGCCTCTATTGTTGTTCACACTGCTCAACTCCTTCCTGTATCAGTGGtggtaagtaccgcatacagccaatccctcaacaatcattatcaggcacctca Alignment from CESAR TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAG---tg tgggggttacttttgagaagctccctgtgacttctttttttaatttctagTACCTCCGGGGACAGTTGGCAGGTACTAACAGCAGTGCTGAGACCATCAGCACAAACCACACCAGCCCCACCGATGCATCGAATGTCAACAATTGGGTGACACTGCTATCGCAGTTGCCTCTATTGTTGTTCACACTGCTCAACTCCTTCCTGTATCAGTGGtggtaagtaccgcatacagccaatccctcaacaatcattatcaggcacctca Alignment from Spaln_aa2Genome TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG tgggggttacttttgagaagctccctgtgacttctttttttaatttctagTACCTCCGGGGACAGTTGGCAGGTACTAACAGCAGTGCTGAGACCATCAGCACAAACCACACCAGCCCCACCGATGCATCGAATGTCAACAATTGGGTGACACTGCTATCGCAGTTGCCTCTATTGTTGTTCACACTGCTCAACTCCTTCCTGTATCAGTGgtggtaagtaccgcatacagccaatccctcaacaatcattatcaggcacctca Alignment from Spaln_nt2Genome TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG--- tgggggttacttttgagaagctccctgtgacttctttttttaatttctagTACCTCCGGGGACAGTTGGCAGGTACTAACAGCAGTGCTGAGACCATCAGCACAAACCACACCAGCCCCACCGATGCATCGAATGTCAACAATTGGGTGACACTGCTATCGCAGTTGCCTCTATTGTTGTTCACACTGCTCAACTCCTTCCTGTATCAGTGGTGgtaagtaccgcatacagccaatccctcaacaatcattatcaggcacctca Alignment from Pairagon TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG tgggggttacttttgagaagctccctgtgacttctttttttaatttctagTACCTCCGGGGACAGTTGGCAGGTACTAACAGCAGTGCTGAGACCATCAGCACAAACCACACCAGCCCCACCGATGCATCGAATGTCAACAATTGGGTGACACTGCTATCGCAGTTGCCTCTATTGTTGTTCACACTGCTCAACTCCTTCCTGTATCAGTGgtggtaagtaccgcatacagccaatccctcaacaatcattatcaggcacctca Alignment from Exonerate_protein2genome TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG tgggggttacttttgagaagctccctgtgacttctttttttaatttctagTACCTCCGGGGACAGTTGGCAGGTACTAACAGCAGTGCTGAGACCATCAGCACAAACCACACCAGCCCCACCGATGCATCGAATGTCAACAATTGGGTGACACTGCTATCGCAGTTGCCTCTATTGTTGTTCACACTGCTCAACTCCTTCCTGTATCAGTGgtggtaagtaccgcatacagccaatccctcaacaatcattatcaggcacctca Alignment from Exonerate_coding2genome TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG tgggggttacttttgagaagctccctgtgacttctttttttaatttctagTACCTCCGGGGACAGTTGGCAGGTACTAACAGCAGTGCTGAGACCATCAGCACAAACCACACCAGCCCCACCGATGCATCGAATGTCAACAATTGGGTGACACTGCTATCGCAGTTGCCTCTATTGTTGTTCACACTGCTCAACTCCTTCCTGTATCAGTGgtggtaagtaccgcatacagccaatccctcaacaatcattatcaggcacctca Alignment from GeneWise TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG tgggggttacttttgagaagctccctgtgacttctttttttaatttctagTACCTCCGGGGACAGTTGGCAGGTACTAACAGCAGTGCTGAGACCATCAGCACAAACCACACCAGCCCCACCGATGCATCGAATGTCAACAATTGGGTGACACTGCTATCGCAGTTGCCTCTATTGTTGTTCACACTGCTCAACTCCTTCCTGTATCAGTGgtggtaagtaccgcatacagccaatccctcaacaatcattatcaggcacctca #### Slc29a2_ID796_10 --> 2 - 0 Original Alignment gtCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagagggcttgcctcttatgtgcaggtCTGTTCTTCAACCCTATCTGCTGCTTTCCGCTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtaagtgtctgggccagagtagcattacttaaaggactagataaccagaa Alignment from CESAR gtCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagagggcttgcctcttatgtgcaggtCTGTTCTTCAACCCTATCTGCTGCTTTCCGCTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtaagtgtctgggccagagtagcattacttaaaggactagataaccagaa Alignment from Spaln_aa2Genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagagggcttgcctcttatgtgcagGTCTGTTCTTCAACCCTATCTGCTGCTTTCCGCTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtaagtgtctgggccagagtagcattacttaaaggactagataaccagaa Alignment from Spaln_nt2Genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagagggcttgcctcttatgtgcagGTCTGTTCTTCAACCCTATCTGCTGCTTTCCGCTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtaagtgtctgggccagagtagcattacttaaaggactagataaccagaa Alignment from Pairagon GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagagggcttgcctcttatgtgcagGTCTGTTCTTCAACCCTATCTGCTGCTTTCCGCTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtaagtgtctgggccagagtagcattacttaaaggactagataaccagaa Alignment from Exonerate_protein2genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagagggcttgcctcttatgtgcagGTCTGTTCTTCAACCCTATCTGCTGCTTTCCGCTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtaagtgtctgggccagagtagcattacttaaaggactagataaccagaa Alignment from Exonerate_coding2genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagagggcttgcctcttatgtgcagGTCTGTTCTTCAACCCTATCTGCTGCTTTCCGCTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtaagtgtctgggccagagtagcattacttaaaggactagataaccagaa Alignment from GeneWise GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagagggcttgcctcttatgtgcagGTCTGTTCTTCAACCCTATCTGCTGCTTTCCGCTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtaagtgtctgggccagagtagcattacttaaaggactagataaccagaa #### Slc29a2_ID797_11 --> 0 - 2 Original Alignment CCAGATGAGGACAGTCAGCAGCTGCTGCCCCTGCTGGTGTGCCTGCGCTTCCTGTTTGTCCCACTCTTCATGCTGTGCCACGTGCCCCAGCACGCCCGGCTGCCCATCATCTTCAGGCAGGATGCCTACTTCATCACCTTCATGCTGCTCTTCGCTGTTTCCAACGGCTACTTGGTGTCTCTCACCATGTGCCTGGCACCCag gcagcccctgtaaactgtatggcctatactttctccccccacccttatagCCAGATGAGGACAGTCAGCAGTTGCTGCCCCTACTCATTTGCCTGCGTTTCCTGTTCGTCCCACTCTTCATGCTGTGCCATGTGCCCCAGCACACCCGACTCCCAATTATCTTCAGGCAGGATGCATACTTCATCACCTTCATGCTACTTTTTGCTGTTTCCAATGGCTATTTGGTCTCACTCACTATGTGCCTGTCCCCAaggtaagtaaggtcagagctcaagggttggacattccattgtgcctagaagc Alignment from CESAR CCAGATGAGGACAGTCAGCAGCTGCTGCCCCTGCTGGTGTGCCTGCGCTTCCTGTTTGTCCCACTCTTCATGCTGTGCCACGTGCCCCAGCACGCCCGGCTGCCCATCATCTTCAGGCAGGATGCCTACTTCATCACCTTCATGCTGCTCTTCGCTGTTTCCAACGGCTACTTGGTGTCTCTCACCATGTGCCTGGCACCCag gcagcccctgtaaactgtatggcctatactttctccccccacccttatagCCAGATGAGGACAGTCAGCAGTTGCTGCCCCTACTCATTTGCCTGCGTTTCCTGTTCGTCCCACTCTTCATGCTGTGCCATGTGCCCCAGCACACCCGACTCCCAATTATCTTCAGGCAGGATGCATACTTCATCACCTTCATGCTACTTTTTGCTGTTTCCAATGGCTATTTGGTCTCACTCACTATGTGCCTGTCCCCAaggtaagtaaggtcagagctcaagggttggacattccattgtgcctagaagc Alignment from Spaln_aa2Genome CCAGATGAGGACAGTCAGCAGCTGCTGCCCCTGCTGGTGTGCCTGCGCTTCCTGTTTGTCCCACTCTTCATGCTGTGCCACGTGCCCCAGCACGCCCGGCTGCCCATCATCTTCAGGCAGGATGCCTACTTCATCACCTTCATGCTGCTCTTCGCTGTTTCCAACGGCTACTTGGTGTCTCTCACCATGTGCCTGGCACCCAG gcagcccctgtaaactgtatggcctatactttctccccccacccttatagCCAGATGAGGACAGTCAGCAGTTGCTGCCCCTACTCATTTGCCTGCGTTTCCTGTTCGTCCCACTCTTCATGCTGTGCCATGTGCCCCAGCACACCCGACTCCCAATTATCTTCAGGCAGGATGCATACTTCATCACCTTCATGCTACTTTTTGCTGTTTCCAATGGCTATTTGGTCTCACTCACTATGTGCCTGTCCCCAAGgtaagtaaggtcagagctcaagggttggacattccattgtgcctagaagc Alignment from Spaln_nt2Genome CCAGATGAGGACAGTCAGCAGCTGCTGCCCCTGCTGGTGTGCCTGCGCTTCCTGTTTGTCCCACTCTTCATGCTGTGCCACGTGCCCCAGCACGCCCGGCTGCCCATCATCTTCAGGCAGGATGCCTACTTCATCACCTTCATGCTGCTCTTCGCTGTTTCCAACGGCTACTTGGTGTCTCTCACCATGTGCCTGGCACCCAG gcagcccctgtaaactgtatggcctatactttctccccccacccttatagCCAGATGAGGACAGTCAGCAGTTGCTGCCCCTACTCATTTGCCTGCGTTTCCTGTTCGTCCCACTCTTCATGCTGTGCCATGTGCCCCAGCACACCCGACTCCCAATTATCTTCAGGCAGGATGCATACTTCATCACCTTCATGCTACTTTTTGCTGTTTCCAATGGCTATTTGGTCTCACTCACTATGTGCCTGTCCCCAAGgtaagtaaggtcagagctcaagggttggacattccattgtgcctagaagc Alignment from Pairagon CCAGATGAGGACAGTCAGCAGCTGCTGCCCCTGCTGGTGTGCCTGCGCTTCCTGTTTGTCCCACTCTTCATGCTGTGCCACGTGCCCCAGCACGCCCGGCTGCCCATCATCTTCAGGCAGGATGCCTACTTCATCACCTTCATGCTGCTCTTCGCTGTTTCCAACGGCTACTTGGTGTCTCTCACCATGTGCCTGGCACCCAG gcagcccctgtaaactgtatggcctatactttctccccccacccttatagCCAGATGAGGACAGTCAGCAGTTGCTGCCCCTACTCATTTGCCTGCGTTTCCTGTTCGTCCCACTCTTCATGCTGTGCCATGTGCCCCAGCACACCCGACTCCCAATTATCTTCAGGCAGGATGCATACTTCATCACCTTCATGCTACTTTTTGCTGTTTCCAATGGCTATTTGGTCTCACTCACTATGTGCCTGTCCCCAAGgtaagtaaggtcagagctcaagggttggacattccattgtgcctagaagc Alignment from Exonerate_protein2genome CCAGATGAGGACAGTCAGCAGCTGCTGCCCCTGCTGGTGTGCCTGCGCTTCCTGTTTGTCCCACTCTTCATGCTGTGCCACGTGCCCCAGCACGCCCGGCTGCCCATCATCTTCAGGCAGGATGCCTACTTCATCACCTTCATGCTGCTCTTCGCTGTTTCCAACGGCTACTTGGTGTCTCTCACCATGTGCCTGGCACCCAG gcagcccctgtaaactgtatggcctatactttctccccccacccttatagCCAGATGAGGACAGTCAGCAGTTGCTGCCCCTACTCATTTGCCTGCGTTTCCTGTTCGTCCCACTCTTCATGCTGTGCCATGTGCCCCAGCACACCCGACTCCCAATTATCTTCAGGCAGGATGCATACTTCATCACCTTCATGCTACTTTTTGCTGTTTCCAATGGCTATTTGGTCTCACTCACTATGTGCCTGTCCCCAAGgtaagtaaggtcagagctcaagggttggacattccattgtgcctagaagc Alignment from Exonerate_coding2genome CCAGATGAGGACAGTCAGCAGCTGCTGCCCCTGCTGGTGTGCCTGCGCTTCCTGTTTGTCCCACTCTTCATGCTGTGCCACGTGCCCCAGCACGCCCGGCTGCCCATCATCTTCAGGCAGGATGCCTACTTCATCACCTTCATGCTGCTCTTCGCTGTTTCCAACGGCTACTTGGTGTCTCTCACCATGTGCCTGGCACCCAGG gcagcccctgtaaactgtatggcctatactttctccccccacccttatagCCAGATGAGGACAGTCAGCAGTTGCTGCCCCTACTCATTTGCCTGCGTTTCCTGTTCGTCCCACTCTTCATGCTGTGCCATGTGCCCCAGCACACCCGACTCCCAATTATCTTCAGGCAGGATGCATACTTCATCACCTTCATGCTACTTTTTGCTGTTTCCAATGGCTATTTGGTCTCACTCACTATGTGCCTGTCCCCAAGGtaagtaaggtcagagctcaagggttggacattccattgtgcctagaagc Alignment from GeneWise CCAGATGAGGACAGTCAGCAGCTGCTGCCCCTGCTGGTGTGCCTGCGCTTCCTGTTTGTCCCACTCTTCATGCTGTGCCACGTGCCCCAGCACGCCCGGCTGCCCATCATCTTCAGGCAGGATGCCTACTTCATCACCTTCATGCTGCTCTTCGCTGTTTCCAACGGCTACTTGGTGTCTCTCACCATGTGCCTGGCACCCAG gcagcccctgtaaactgtatggcctatactttctccccccacccttatagCCAGATGAGGACAGTCAGCAGTTGCTGCCCCTACTCATTTGCCTGCGTTTCCTGTTCGTCCCACTCTTCATGCTGTGCCATGTGCCCCAGCACACCCGACTCCCAATTATCTTCAGGCAGGATGCATACTTCATCACCTTCATGCTACTTTTTGCTGTTTCCAATGGCTATTTGGTCTCACTCACTATGTGCCTGTCCCCAAGgtaagtaaggtcagagctcaagggttggacattccattgtgcctagaagc #### Slc3a2_ID2302_7 --> 1 - 0 Original Alignment gCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT atcttatccctcagcaggtacacgcacactctgtcctctttctctcttagaCTTTTAATTGCTGGGACTGAAACCTCGGACCTGCCACAGATTCTCAATATACTAGAGTCCACTAGCGACCTGTTATTGACTAGCTCATACCTTTCAAATTTAACATACACTGGGGAACGCACTGAGTCTTTAGTAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtacgcgccttgatgagcagcctagagctgaacatgtgggtcggaggggc Alignment from CESAR gCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT atcttatccctcagcaggtacacgcacactctgtcctctttctctcttagaCTTTTAATTGCTGGGACTGAAACCTCGGACCTGCCACAGATTCTCAATATACTAGAGTCCACTAGCGACCTGTTATTGACTAGCTCATACCTTTCAAATTTAACATACACTGGGGAACGCACTGAGTCTTTAGTAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtacgcgccttgatgagcagcctagagctgaacatgtgggtcggaggggc Alignment from Spaln_aa2Genome GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT atcttatccctcagcaggtacacgcacactctgtcctctttctctcttagACTTTTAATTGCTGGGACTGAAACCTCGGACCTGCCACAGATTCTCAATATACTAGAGTCCACTAGCGACCTGTTATTGACTAGCTCATACCTTTCAAATTTAACATACACTGGGGAACGCACTGAGTCTTTAGTAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtacgcgccttgatgagcagcctagagctgaacatgtgggtcggaggggc Alignment from Spaln_nt2Genome GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT atcttatccctcagcaggtacacgcacactctgtcctctttctctcttagACTTTTAATTGCTGGGACTGAAACCTCGGACCTGCCACAGATTCTCAATATACTAGAGTCCACTAGCGACCTGTTATTGACTAGCTCATACCTTTCAAATTTAACATACACTGGGGAACGCACTGAGTCTTTAGTAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtacgcgccttgatgagcagcctagagctgaacatgtgggtcggaggggc Alignment from Pairagon GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT atcttatccctcagcaggtacacgcacactctgtcctctttctctcttagACTTTTAATTGCTGGGACTGAAACCTCGGACCTGCCACAGATTCTCAATATACTAGAGTCCACTAGCGACCTGTTATTGACTAGCTCATACCTTTCAAATTTAACATACACTGGGGAACGCACTGAGTCTTTAGTAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtacgcgccttgatgagcagcctagagctgaacatgtgggtcggaggggc Alignment from Exonerate_protein2genome GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT atcttatccctcagcaggtacacgcacactctgtcctctttctctcttagACTTTTAATTGCTGGGACTGAAACCTCGGACCTGCCACAGATTCTCAATATACTAGAGTCCACTAGCGACCTGTTATTGACTAGCTCATACCTTTCAAATTTAACATACACTGGGGAACGCACTGAGTCTTTAGTAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtacgcgccttgatgagcagcctagagctgaacatgtgggtcggaggggc Alignment from Exonerate_coding2genome GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT atcttatccctcagcaggtacacgcacactctgtcctctttctctcttagACTTTTAATTGCTGGGACTGAAACCTCGGACCTGCCACAGATTCTCAATATACTAGAGTCCACTAGCGACCTGTTATTGACTAGCTCATACCTTTCAAATTTAACATACACTGGGGAACGCACTGAGTCTTTAGTAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtacgcgccttgatgagcagcctagagctgaacatgtgggtcggaggggc Alignment from GeneWise GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT-------------------------------------------------- atcttatccctcagcaggtacacgcacactctgtcctctttctctcttagACTTTTAATTGCTGGGACTGAAACCTCGGACCTGCCACAGATTCTCAATATACTAGAGTCCACTAGCGACCTGTTATTGACTAGCTCATACCTTTCAAATTTAACATACACTGGGGAACGCACTGAGTCTTTAGTAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTGTACGCGCCTTGATGAGCAGCCTAGAGCTGAACATGTGGGTCGGAGGGGC #### Slc3a2_ID2306_3 --> 2 - 1 Original Alignment gtCTGAAGAGCCAT---CTGGAGTACTTGAGCACCCTGAAGGTGAAGGGCCTGGTGTTAGGC------CCAATTCACAAGAACCAGAAGGATGAAATCAATGAAACCGACCTGAAACAGATTAATCCCACTTTGGGCTCCCAGGAAGATTTTAAAGACCTTCTACAAAGTGCCAAGAAAAAGa ggttgcagctatttttaactgcgtattatgatcattttgttttcccgtaggtCTGAAGAGCCATCTTCTAGAGTTCTTGAGCATGTTGAAGGTGAAGGGCCTTGTGTCAGGCCCGTCCCCCATTCACAAGAACCAAAAAGATGAGATCAATGAGACAGACCTGAAACAGATTAATCCCACTCAGGGCTCTCAGAAAGATTTTAAGGACCTTTTACAGAGCACCAAAATAAGGagtactgccctgaatgggtctcaaatggtctattttagttcagctaacact Alignment from CESAR gtCTGAAGAGCCAT---CTGGAGTACTTGAGCACCCTGAAGGTGAAGGGCCTGGTGTTAGGCCCA------ATTCACAAGAACCAGAAGGATGAAATCAATGAAACCGACCTGAAACAGATTAATCCCACTTTGGGCTCCCAGGAAGATTTTAAAGACCTTCTACAAAGTGCCAAGAAAAAGa ggttgcagctatttttaactgcgtattatgatcattttgttttcccgtaggtCTGAAGAGCCATCTTCTAGAGTTCTTGAGCATGTTGAAGGTGAAGGGCCTTGTGTCAGGCCCGTCCCCCATTCACAAGAACCAAAAAGATGAGATCAATGAGACAGACCTGAAACAGATTAATCCCACTCAGGGCTCTCAGAAAGATTTTAAGGACCTTTTACAGAGCACCAAAATAAGGagtactgccctgaatgggtctcaaatggtctattttagttcagctaacact Alignment from Spaln_aa2Genome GTCTGAAGAGCCAT---CTGGAGTACTTGAGCACCCTGAAGGTGAAGGGCCTGGTGTTAGGC------CCAATTCACAAGAACCAGAAGGATGAAATCAATGAAACCGACCTGAAACAGATTAATCCCACTTTGGGCTCCCAGGAAGATTTTAAAGACCTTCTACAAAGTGCCAAGAAAAAGA ggttgcagctatttttaactgcgtattatgatcattttgttttcccgtagGTCTGAAGAGCCATCTTCTAGAGTTCTTGAGCATGTTGAAGGTGAAGGGCCTTGTGTCAGGCCCGTCCCCCATTCACAAGAACCAAAAAGATGAGATCAATGAGACAGACCTGAAACAGATTAATCCCACTCAGGGCTCTCAGAAAGATTTTAAGGACCTTTTACAGAGCACCAAAATAAGGAgtactgccctgaatgggtctcaaatggtctattttagttcagctaacact Alignment from Spaln_nt2Genome GTCTGAAGAGCCA---TCTGGAGTACTTGAGCACCCTGAAGGTGAAGGGCCTGGTGTTAGGCCCA------ATTCACAAGAACCAGAAGGATGAAATCAATGAAACCGACCTGAAACAGATTAATCCCACTTTGGGCTCCCAGGAAGATTTTAAAGACCTTCTACAAAGTGCCAAGAAAAAGA ggttgcagctatttttaactgcgtattatgatcattttgttttcccgtagGTCTGAAGAGCCATCTTCTAGAGTTCTTGAGCATGTTGAAGGTGAAGGGCCTTGTGTCAGGCCCGTCCCCCATTCACAAGAACCAAAAAGATGAGATCAATGAGACAGACCTGAAACAGATTAATCCCACTCAGGGCTCTCAGAAAGATTTTAAGGACCTTTTACAGAGCACCAAAATAAGGAgtactgccctgaatgggtctcaaatggtctattttagttcagctaacact Alignment from Pairagon GTCTGAAGAGCCA---TCTGGAGTACTTGAGCACCCTGAAGGTGAAGGGCCTGGTGTTAGGCCCA------ATTCACAAGAACCAGAAGGATGAAATCAATGAAACCGACCTGAAACAGATTAATCCCACTTTGGGCTCCCAGGAAGATTTTAAAGACCTTCTACAAAGTGCCAAGAAAAAGA ggttgcagctatttttaactgcgtattatgatcattttgttttcccgtagGTCTGAAGAGCCATCTTCTAGAGTTCTTGAGCATGTTGAAGGTGAAGGGCCTTGTGTCAGGCCCGTCCCCCATTCACAAGAACCAAAAAGATGAGATCAATGAGACAGACCTGAAACAGATTAATCCCACTCAGGGCTCTCAGAAAGATTTTAAGGACCTTTTACAGAGCACCAAAATAAGGAgtactgccctgaatgggtctcaaatggtctattttagttcagctaacact Alignment from Exonerate_protein2genome GTCTGAAGAGCCAT---CTGGAGTACTTGAGCACCCTGAAGGTGAAGGGCCTGGTGTTAGGC------CCAATTCACAAGAACCAGAAGGATGAAATCAATGAAACCGACCTGAAACAGATTAATCCCACTTTGGGCTCCCAGGAAGATTTTAAAGACCTTCTACAAAGTGCCAAGAAAAAGA ggttgcagctatttttaactgcgtattatgatcattttgttttcccgtagGTCTGAAGAGCCATCTTCTAGAGTTCTTGAGCATGTTGAAGGTGAAGGGCCTTGTGTCAGGCCCGTCCCCCATTCACAAGAACCAAAAAGATGAGATCAATGAGACAGACCTGAAACAGATTAATCCCACTCAGGGCTCTCAGAAAGATTTTAAGGACCTTTTACAGAGCACCAAAATAAGGAgtactgccctgaatgggtctcaaatggtctattttagttcagctaacact Alignment from Exonerate_coding2genome GTCTGAAGAGCCAT---CTGGAGTACTTGAGCACCCTGAAGGTGAAGGGCCTGGTGTTAGGC------CCAATTCACAAGAACCAGAAGGATGAAATCAATGAAACCGACCTGAAACAGATTAATCCCACTTTGGGCTCCCAGGAAGATTTTAAAGACCTTCTACAAAGTGCCAAGAAAAAGA ggttgcagctatttttaactgcgtattatgatcattttgttttcccgtagGTCTGAAGAGCCATCTTCTAGAGTTCTTGAGCATGTTGAAGGTGAAGGGCCTTGTGTCAGGCCCGTCCCCCATTCACAAGAACCAAAAAGATGAGATCAATGAGACAGACCTGAAACAGATTAATCCCACTCAGGGCTCTCAGAAAGATTTTAAGGACCTTTTACAGAGCACCAAAATAAGGAgtactgccctgaatgggtctcaaatggtctattttagttcagctaacact Alignment from GeneWise GTCTGAAGAGCCATCTG---GAGTACTTGAGCACCCTGAAGGTGAAGGGCCTGGTGTTAGGCCCA------ATTCACAAGAACCAGAAGGATGAAATCAATGAAACCGACCTGAAACAGATTAATCCCACTTTGGGCTCCCAGGAAGATTTTAAAGACCTTCTACAAAGTGCCAAGAAAAAGA ggttgcagctatttttaactgcgtattatgatcattttgttttcccgtagGTCTGAAGAGCCATCTTCTAGAGTTCTTGAGCATGTTGAAGGTGAAGGGCCTTGTGTCAGGCCCGTCCCCCATTCACAAGAACCAAAAAGATGAGATCAATGAGACAGACCTGAAACAGATTAATCCCACTCAGGGCTCTCAGAAAGATTTTAAGGACCTTTTACAGAGCACCAAAATAAGGAgtactgccctgaatgggtctcaaatggtctattttagttcagctaacact #### Slc3a2_ID2307_2 --> 2 - 1 Original Alignment gcACCATGAGCCAGGACACCGAAGTGGACATGAAAGATGTGGAGCTGAACGAGCTAGAACCGGAGAAGCAGCCCATGAATGCAGCGGACGGGGCGGCGGCCGGGGAGAAGAACGGTCTGGTGAAGATCAAGGTGGCGGAGGACGAGACGGAGGCCGGGGTCAAGTTCACCGGCTTATCCAAGGAGGAGCTACTGAAGGTAGCGGGCAGCCCTGGCTGGGTGCGCACCCGCTGGGCGCTGCTGCTGCTCTTCTGGCTCGGTTGGCTGGGCATGCTGGCGGGCGCCGTGGTTATCATCGTTCGGGCGCCGCGCTGCCGTGAGCTGCCTGTACAGAGGTGGTGGCACAAGGGCGCCCTCTACCGCATCGGCGACCTTCAGGCCTTTGTAGGCCGGGATGCGGGAGGCATAGCTg agggagctgtctcattcattcatagatgcttccctctccctctcccacaggcACAAAGAGCCAGGAAACTCAAGTGGACATGAAAGAT------CTGAACGAGCTAGAGCCACAGAAGCAGCCTATGAATGCAGCCGACAGTGCAGCAGCTGGTGAGAAGAATGGTCTGGTAACGATTAAAATTGCTGAAGATGAGACAGAGGCTAGTGTTAAGTTTACTGGCCTATCACAAGAGGAGCCTTTGAAAGTAGCTGGCAGCCCAGGCTGGGTATGCACCTGTTGGGCACTG---------------------------TGTATGCTTGCCGGCACTGTGGTAATCATAGTTCAGGTCCCTCGATGTTGTGACCTGCCTGTTCAGAAGTGGTGGCACAGGAGCATTCTCTACAGTATCAGCGATCTACAAGCATTTGTGGGGCGGGATGTGGGTGGCATAGCTggtgggttcatgatgcagcatcttcccttatgctcatgactatgagtccat Alignment from CESAR gcACCATGAGCCAGGACACCGAAGTGGACATGAAAGATGTGGAGCTGAACGAGCTAGAACCGGAGAAGCAGCCCATGAATGCAGCGGACGGGGCGGCGGCCGGGGAGAAGAACGGTCTGGTGAAGATCAAGGTGGCGGAGGACGAGACGGAGGCCGGGGTCAAGTTCACCGGCTTATCCAAGGAGGAGCTACTGAAGGTAGCGGGCAGCCCTGGCTGGGTGCGCACCCGCTGGGCGCTGCTGCTGCTCTTCTGGCTCGGTTGGCTGGGCATGCTGGCGGGCGCCGTGGTTATCATCGTTCGGGCGCCGCGCTGCCGTGAGCTGCCTGTACAGAGGTGGTGGCACAAGGGCGCCCTCTACCGCATCGGCGACCTTCAGGCCTTTGTAGGCCGGGATGCGGGAGGCATAGCTg agggagctgtctcattcattcatagatgcttccctctccctctcccacaggcACAAAGAGCCAGGAAACTCAAGTGGACATGAAAGAT------CTGAACGAGCTAGAGCCACAGAAGCAGCCTATGAATGCAGCCGACAGTGCAGCAGCTGGTGAGAAGAATGGTCTGGTAACGATTAAAATTGCTGAAGATGAGACAGAGGCTAGTGTTAAGTTTACTGGCCTATCACAAGAGGAGCCTTTGAAAGTAGCTGGCAGCCCAGGCTGGGTATGCACCTGTTGGGCA---------------------------CTGTGTATGCTTGCCGGCACTGTGGTAATCATAGTTCAGGTCCCTCGATGTTGTGACCTGCCTGTTCAGAAGTGGTGGCACAGGAGCATTCTCTACAGTATCAGCGATCTACAAGCATTTGTGGGGCGGGATGTGGGTGGCATAGCTggtgggttcatgatgcagcatcttcccttatgctcatgactatgagtccat Alignment from Spaln_aa2Genome GCACCATGAGCCAGGACACCGAAGTGGACATGAAAGATGTGGAGCTGAACGAGCTAGAACCGGAGAAGCAGCCCATGAATGCAGCGGACGGGGCGGCGGCCGGGGAGAAGAACGGTCTGGTGAAGATCAAGGTGGCGGAGGACGAGACGGAGGCCGGGGTCAAGTTCACCGGCTTATCCAAGGAGGAGCTACTGAAGGTAGCGGGCAGCCCTGGCTGGGTGCGCACCCGCTGGGCGCTGCTGCTGCTCTTCTGGCTCGGTTGGCTGGGCATGCTGGCGGGCGCCGTGGTTATCATCGTTCGGGCGCCGCGCTGCCGTGAGCTGCCTGTACAGAGGTGGTGGCACAAGGGCGCCCTCTACCGCATCGGCGACCTTCAGGCCTTTGTAGGCCGGGATGCGGGAGGCATAGCTG agggagctgtctcattcattcatagatgcttccctctccctctcccacagGCACAAAGAGCCAGGAAACTCAAGTGGACATGAAAGAT------CTGAACGAGCTAGAGCCACAGAAGCAGCCTATGAATGCAGCCGACAGTGCAGCAGCTGGTGAGAAGAATGGTCTGGTAACGATTAAAATTGCTGAAGATGAGACAGAGGCTAGTGTTAAGTTTACTGGCCTATCACAAGAGGAGCCTTTGAAAGTAGCTGGCAGCCCAGGCTGGGTATGCACCTGTTGGGCA---------------------------CTGTGTATGCTTGCCGGCACTGTGGTAATCATAGTTCAGGTCCCTCGATGTTGTGACCTGCCTGTTCAGAAGTGGTGGCACAGGAGCATTCTCTACAGTATCAGCGATCTACAAGCATTTGTGGGGCGGGATGTGGGTGGCATAGCTGgtgggttcatgatgcagcatcttcccttatgctcatgactatgagtccat Alignment from Spaln_nt2Genome GCACCATGAGCCAGGACACCGAAGTGGACATGAAAGATGTGGAGCTGAACGAGCTAGAACCGGAGAAGCAGCCCATGAATGCAGCGGACGGGGCGGCGGCCGGGGAGAAGAACGGTCTGGTGAAGATCAAGGTGGCGGAGGACGAGACGGAGGCCGGGGTCAAGTTCACCGGCTTATCCAAGGAGGAGCTACTGAAGGTAGCGGGCAGCCCTGGCTGGGTGCGCACCCGCTGGGCGCTGCTGCTGCTCTTCTGGCTCGGTTGGCTGGGCATGCTGGCGGGCGCCGTGGTTATCATCGTTCGGGCGCCGCGCTGCCGTGAGCTGCCTGTACAGAGGTGGTGGCACAAGGGCGCCCTCTACCGCATCGGCGACCTTCAGGCCTTTGTAGGCCGGGATGCGGGAGGCATAGCTG agggagctgtctcattcattcatagatgcttccctctccctctcccacagGCACAAAGAGCCAGGAAACTCAAGTGGACATGAAAGAT------CTGAACGAGCTAGAGCCACAGAAGCAGCCTATGAATGCAGCCGACAGTGCAGCAGCTGGTGAGAAGAATGGTCTGGTAACGATTAAAATTGCTGAAGATGAGACAGAGGCTAGTGTTAAGTTTACTGGCCTATCACAAGAGGAGCCTTTGAAAGTAGCTGGCAGCCCAGGCTGGGTATGCACCTGTTGGGC---------------------------ACTGTGTATGCTTGCCGGCACTGTGGTAATCATAGTTCAGGTCCCTCGATGTTGTGACCTGCCTGTTCAGAAGTGGTGGCACAGGAGCATTCTCTACAGTATCAGCGATCTACAAGCATTTGTGGGGCGGGATGTGGGTGGCATAGCTGgtgggttcatgatgcagcatcttcccttatgctcatgactatgagtccat Alignment from Pairagon GCACCATGAGCCAGGACACCGAAGTGGACATGAAAGATGTGGAGCTGAACGAGCTAGAACCGGAGAAGCAGCCCATGAATGCAGCGGACGGGGCGGCGGCCGGGGAGAAGAACGGTCTGGTGAAGATCAAGGTGGCGGAGGACGAGACGGAGGCCGGGGTCAAGTTCACCGGCTTATCCAAGGAGGAGCTACTGAAGGTAGCGGGCAGCCCTGGCTGGGTGCGCACCCGCTGGGCGCTGCTGCTGCTCTTCTGGCTCGGTTGGCTGGGCATGCTGGCGGGCGCCGTGGTTATCATCGTTCGGGCGCCGCGCTGCCGTGAGCTGCCTGTACAGAGGTGGTGGCACAAGGGCGCCCTCTACCGCATCGGCGACCTTCAGGCCTTTGTAGGCCGGGATGCGGGAGGCATAGCTG agggagctgtctcattcattcatagatgcttccctctccctctcccacagGCACAAAGAGCCAGGAAACTCAAGTGGACATGAAAGAT------CTGAACGAGCTAGAGCCACAGAAGCAGCCTATGAATGCAGCCGACAGTGCAGCAGCTGGTGAGAAGAATGGTCTGGTAACGATTAAAATTGCTGAAGATGAGACAGAGGCTAGTGTTAAGTTTACTGGCCTATCACAAGAGGAGCCTTTGAAAGTAGCTGGCAGCCCAGGCTGGGTATGCACCTGTTGGGCACTGT---------------------------GTATGCTTGCCGGCACTGTGGTAATCATAGTTCAGGTCCCTCGATGTTGTGACCTGCCTGTTCAGAAGTGGTGGCACAGGAGCATTCTCTACAGTATCAGCGATCTACAAGCATTTGTGGGGCGGGATGTGGGTGGCATAGCTGgtgggttcatgatgcagcatcttcccttatgctcatgactatgagtccat Alignment from Exonerate_protein2genome CTGGGCATGCTGGCGGGCGCCGTGGTTATCATCGTTCGGGCGCCGCGCTGCCGTGAGCTGCCTGTACAGAGGTGGTGGCACAAGGGCGCCCTCTACCGCATCGGCGACCTTCAGGCCTTTGTAGGCCGGGATGCGGGAGGCATAGCTG agggagctgtctcattcattcatagatgcttccctctccctctcccacaggcacaaagagccaggaaactcaagtggacatgaaagatctgaacgagctagagccacagaagcagcctatgaatgcagccgacagtgcagcagctggtgagaagaatggtctggtaacgattaaaattgctgaagatgagacagaggctagtgttaagtttactggcctatcacaagaggagcctttgaaagtagctggcagcccaggctgggtatgcacctgttgggcaCTGTGTATGCTTGCCGGCACTGTGGTAATCATAGTTCAGGTCCCTCGATGTTGTGACCTGCCTGTTCAGAAGTGGTGGCACAGGAGCATTCTCTACAGTATCAGCGATCTACAAGCATTTGTGGGGCGGGATGTGGGTGGCATAGCTGgtgggttcatgatgcagcatcttcccttatgctcatgactatgagtccat Alignment from Exonerate_coding2genome CTGGGCATGCTGGCGGGCGCCGTGGTTATCATCGTTCGGGCGCCGCGCTGCCGTGAGCTGCCTGTACAGAGGTGGTGGCACAAGGGCGCCCTCTACCGCATCGGCGACCTTCAGGCCTTTGTAGGCCGGGATGCGGGAGGCATAGCTG agggagctgtctcattcattcatagatgcttccctctccctctcccacaggcacaaagagccaggaaactcaagtggacatgaaagatctgaacgagctagagccacagaagcagcctatgaatgcagccgacagtgcagcagctggtgagaagaatggtctggtaacgattaaaattgctgaagatgagacagaggctagtgttaagtttactggcctatcacaagaggagcctttgaaagtagctggcagcccaggctgggtatgcacctgttgggcaCTGTGTATGCTTGCCGGCACTGTGGTAATCATAGTTCAGGTCCCTCGATGTTGTGACCTGCCTGTTCAGAAGTGGTGGCACAGGAGCATTCTCTACAGTATCAGCGATCTACAAGCATTTGTGGGGCGGGATGTGGGTGGCATAGCTGgtgggttcatgatgcagcatcttcccttatgctcatgactatgagtccat Alignment from GeneWise GCACCATGAGCCAGGACACCGAAGTGGACATGAAAGATGTGGAGCTGAACGAGCTAGAACCGGAGAAGCAGCCCATGAATGCAGCGGACGGGGCGGCGGCCGGGGAGAAGAACGGTCTGGTGAAGATCAAGGTGGCGGAGGACGAGACGGAGGCCGGGGTCAAGTTCACCGGCTTATCCAAGGAGGAGCTACTGAAGGTAGCGGGCAGCCCTGGCTGGGTGCGCACCCGCTGGGCGCTGCTGCTGCTCTTCTGGCTCGGTTGGCTGGGCATGCTGGCGGGCGCCGTGGTTATCATCGTTCGGGCGCCGCGCTGCCGTGAGCTGCCTGTACAGAGGTGGTGGCACAAGGGCGCCCTCTACCGCATCGGCGACCTTCAGGCCTTTGTAGGCCGGGATGCGGGAGGCATAGCTG agggagctgtctcattcattcatagatgcttccctctccctctcccacagGCACAAAGAGCCAGGAAACTCAAGTGGACATGAAAGAT------CTGAACGAGCTAGAGCCACAGAAGCAGCCTATGAATGCAGCCGACAGTGCAGCAGCTGGTGAGAAGAATGGTCTGGTAACGATTAAAATTGCTGAAGATGAGACAGAGGCTAGTGTTAAGTTTACTGGCCTATCACAAGAGGAGCCTTTGAAAGTAGCTGGCAGCCCAGGCTGGGTATGCACCTGTTGGGCACTGTGT---------------------------ATGCTTGCCGGCACTGTGGTAATCATAGTTCAGGTCCCTCGATGTTGTGACCTGCCTGTTCAGAAGTGGTGGCACAGGAGCATTCTCTACAGTATCAGCGATCTACAAGCATTTGTGGGGCGGGATGTGGGTGGCATAGCTGgtgggttcatgatgcagcatcttcccttatgctcatgactatgagtccat #### Slit1_ID8219_20 --> 1 - 1 Original Alignment aAACCTCCTGGCCAACCCGTTCAACTGCAACTGCCATCTGTCATGGCTGGGCGACTGGCTCCGGAAGAGGAAGATTGTGACGGGGAACCCTCGCTGTCAGAACCCAGACTTCCTGCGGCAGATTCCTCTGCAGGATGTGGCCTTCCCTGACTTCAGGTGTGAGGAAg tgggcccatttggtgtatgcttatagcataattttttcctttctgcacagtAATCTCTTGATC---CCTTTCAACTGCAACTGTCAGCTGTCATGGCTAGGTGACTGGCTACAGAAGAGGAAGATTGTAGCAGGAAACCATCACTGTCAGAACCCATACTTCCTGCAGCAAATTCCTTTGCAGGATGTGGCCTTCCGAGACCTCACGTGCAAGGAAggtgagttgtagaacatgcaatacagtagtcaaagaactgagctcttgtct Alignment from CESAR aAACCTCCTGGCCAACCCGTTCAACTGCAACTGCCATCTGTCATGGCTGGGCGACTGGCTCCGGAAGAGGAAGATTGTGACGGGGAACCCTCGCTGTCAGAACCCAGACTTCCTGCGGCAGATTCCTCTGCAGGATGTGGCCTTCCCTGACTTCAGGTGTGAGGAAg tgggcccatttggtgtatgcttatagcataattttttcctttctgcacagtAATCTCTTGATC---CCTTTCAACTGCAACTGTCAGCTGTCATGGCTAGGTGACTGGCTACAGAAGAGGAAGATTGTAGCAGGAAACCATCACTGTCAGAACCCATACTTCCTGCAGCAAATTCCTTTGCAGGATGTGGCCTTCCGAGACCTCACGTGCAAGGAAggtgagttgtagaacatgcaatacagtagtcaaagaactgagctcttgtct Alignment from Spaln_aa2Genome AAACCTCCTGGCCAACCCGTTCAACTGCAACTGCCATCTGTCATGGCTGGGCGACTGGCTCCGGAAGAGGAAGATTGTGACGGGGAACCCTCGCTGTCAGAACCCAGACTTCCTGCGGCAGATTCCTCTGCAGGATGTGGCCTTCCCTGACTTCAGGTGTGAGGAAG tgggcccatttggtgtatgcttatagcataattttttcctttctgcacagTAATCTCTTGATC---CCTTTCAACTGCAACTGTCAGCTGTCATGGCTAGGTGACTGGCTACAGAAGAGGAAGATTGTAGCAGGAAACCATCACTGTCAGAACCCATACTTCCTGCAGCAAATTCCTTTGCAGGATGTGGCCTTCCGAGACCTCACGTGCAAGGAAGgtgagttgtagaacatgcaatacagtagtcaaagaactgagctcttgtct Alignment from Spaln_nt2Genome AAACCTCCTGGCCAACCCGTTCAACTGCAACTGCCATCTGTCATGGCTGGGCGACTGGCTCCGGAAGAGGAAGATTGTGACGGGGAACCCTCGCTGTCAGAACCCAGACTTCCTGCGGCAGATTCCTCTGCAGGATGTGGCCTTCCCTGACTTCAGGTGTGAGGAAG tgggcccatttggtgtatgcttatagcataattttttcctttctgcacagTAATCTCTTG---ATCCCTTTCAACTGCAACTGTCAGCTGTCATGGCTAGGTGACTGGCTACAGAAGAGGAAGATTGTAGCAGGAAACCATCACTGTCAGAACCCATACTTCCTGCAGCAAATTCCTTTGCAGGATGTGGCCTTCCGAGACCTCACGTGCAAGGAAGgtgagttgtagaacatgcaatacagtagtcaaagaactgagctcttgtct Alignment from Pairagon AAACCTCCTGGCCAACCCGTTCAACTGCAACTGCCATCTGTCATGGCTGGGCGACTGGCTCCGGAAGAGGAAGATTGTGACGGGGAACCCTCGCTGTCAGAACCCAGACTTCCTGCGGCAGATTCCTCTGCAGGATGTGGCCTTCCCTGACTTCAGGTGTGAGGAAG tgggcccatttggtgtatgcttatagcataattttttcctttctgcacagTAATCTCTTG---ATCCCTTTCAACTGCAACTGTCAGCTGTCATGGCTAGGTGACTGGCTACAGAAGAGGAAGATTGTAGCAGGAAACCATCACTGTCAGAACCCATACTTCCTGCAGCAAATTCCTTTGCAGGATGTGGCCTTCCGAGACCTCACGTGCAAGGAAGgtgagttgtagaacatgcaatacagtagtcaaagaactgagctcttgtct Alignment from Exonerate_protein2genome AAACCTCCTGGCCAACCCGTTCAACTGCAACTGCCATCTGTCATGGCTGGGCGACTGGCTCCGGAAGAGGAAGATTGTGACGGGGAACCCTCGCTGTCAGAACCCAGACTTCCTGCGGCAGATTCCTCTGCAGGATGTGGCCTTCCCTGACTTCAGGTGTGAGGAAG tgggcccatttggtgtatgcttatagcataattttttcctttctgcacagTAATCTCTTGATC---CCTTTCAACTGCAACTGTCAGCTGTCATGGCTAGGTGACTGGCTACAGAAGAGGAAGATTGTAGCAGGAAACCATCACTGTCAGAACCCATACTTCCTGCAGCAAATTCCTTTGCAGGATGTGGCCTTCCGAGACCTCACGTGCAAGGAAGgtgagttgtagaacatgcaatacagtagtcaaagaactgagctcttgtct Alignment from Exonerate_coding2genome AAACCTCCTGGCCAACCCGTTCAACTGCAACTGCCATCTGTCATGGCTGGGCGACTGGCTCCGGAAGAGGAAGATTGTGACGGGGAACCCTCGCTGTCAGAACCCAGACTTCCTGCGGCAGATTCCTCTGCAGGATGTGGCCTTCCCTGACTTCAGGTGTGAGGAAG tgggcccatttggtgtatgcttatagcataattttttcctttctgcacagTAATCTCTTGATC---CCTTTCAACTGCAACTGTCAGCTGTCATGGCTAGGTGACTGGCTACAGAAGAGGAAGATTGTAGCAGGAAACCATCACTGTCAGAACCCATACTTCCTGCAGCAAATTCCTTTGCAGGATGTGGCCTTCCGAGACCTCACGTGCAAGGAAGgtgagttgtagaacatgcaatacagtagtcaaagaactgagctcttgtct Alignment from GeneWise AAACCTCCTGGCCAACCCGTTCAACTGCAACTGCCATCTGTCATGGCTGGGCGACTGGCTCCGGAAGAGGAAGATTGTGACGGGGAACCCTCGCTGTCAGAACCCAGACTTCCTGCGGCAGATTCCTCTGCAGGATGTGGCCTTCCCTGACTTCAGGTGTGAGGAAG tgggcccatttggtgtatgcttatagcataattttttcctttctgcacagTAATCTCTTGATC---CCTTTCAACTGCAACTGTCAGCTGTCATGGCTAGGTGACTGGCTACAGAAGAGGAAGATTGTAGCAGGAAACCATCACTGTCAGAACCCATACTTCCTGCAGCAAATTCCTTTGCAGGATGTGGCCTTCCGAGACCTCACGTGCAAGGAAGgtgagttgtagaacatgcaatacagtagtcaaagaactgagctcttgtct #### Slit1_ID8222_17 --> 1 - 2 Original Alignment aCGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAat ttagatggaggggggagctaggtgttaagaattcctttccttctatttagtCGACTGAACAACAATGAGATCTCTATCCTAGAGGCCACTGGGTTGTTTAGGAAGCTCACACATCTGGAGAAAatgtgagggcagacgagctgggagtaactgtattgctgtttatcaatgttta Alignment from CESAR aCGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAat ttagatggaggggggagctaggtgttaagaattcctttccttctatttagtCGACTGAACAACAATGAGATCTCTATCCTAGAGGCCACTGGGTTGTTTAGGAAGCTCACACATCTGGAGAAAatgtgagggcagacgagctgggagtaactgtttctggtgatttgcttcttta Alignment from Spaln_aa2Genome ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT ttagatggaggggggagctaggtgttaagaattcctttccttctatttagTCGACTGAACAACAATGAGATCTCTATCCTAGAGGCCACTGGGTTGTTTAGGAAGCTCACACATCTGGAGAAAATgtgagggcagacgagctgggagtaactgtattgctgtttatcaatgttta Alignment from Spaln_nt2Genome ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT ttagatggaggggggagctaggtgttaagaattcctttccttctatttagTCGACTGAACAACAATGAGATCTCTATCCTAGAGGCCACTGGGTTGTTTAGGAAGCTCACACATCTGGAGAAAATgtgagggcagacgagctgggagtaactgtattgctgtttatcaatgttta Alignment from Pairagon ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT ttagatggaggggggagctaggtgttaagaattcctttccttctatttagTCGACTGAACAACAATGAGATCTCTATCCTAGAGGCCACTGGGTTGTTTAGGAAGCTCACACATCTGGAGAAAATgtgagggcagacgagctgggagtaactgtattgctgtttatcaatgttta Alignment from Exonerate_protein2genome ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT ttagatggaggggggagctaggtgttaagaattcctttccttctatttagTCGACTGAACAACAATGAGATCTCTATCCTAGAGGCCACTGGGTTGTTTAGGAAGCTCACACATCTGGAGAAAATgtgagggcagacgagctgggagtaactgtattgctgtttatcaatgttta Alignment from Exonerate_coding2genome ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT ttagatggaggggggagctaggtgttaagaattcctttccttctatttagTCGACTGAACAACAATGAGATCTCTATCCTAGAGGCCACTGGGTTGTTTAGGAAGCTCACACATCTGGAGAAAATgtgagggcagacgagctgggagtaactgtattgctgtttatcaatgttta Alignment from GeneWise ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT ttagatggaggggggagctaggtgttaagaattcctttccttctatttagTCGACTGAACAACAATGAGATCTCTATCCTAGAGGCCACTGGGTTGTTTAGGAAGCTCACACATCTGGAGAAAATgtgagggcagacgagctgggagtaactgtattgctgtttatcaatgttta #### Slit1_ID8224_15 --> 2 - 1 Original Alignment ccAAAGAGCAGTACTTCATTCCAg tctaactatggtctccaaggagaaatgaacccaccattgcacttctacagctAAAGAGCAGTATTTCATTCCAggtaattacatctgtgggaaggaacatcgcaggaaatggccactccaagaa Alignment from CESAR ccAAAGAGCAGTACTTCATTCCAg tctaactatggtctccaaggagaaatgaacccaccattgcacttctacagctAAAGAGCAGTATTTCATTCCAggtaattacatctgtgggaaggaacatcgcaggaaatggccactccaagaa Alignment from Spaln_aa2Genome CCAAAGAGCAGTACTTCATTCCAG tctaactatggtctccaaggagaaatgaacccaccattgcacttctacagCTAAAGAGCAGTATTTCATTCCAGgtaattacatctgtgggaaggaacatcgcaggaaatggccactccaagaa Alignment from Spaln_nt2Genome CCAAAGAGCAGTACTTCATTCCAG tctaactatggtctccaaggagaaatgaacccaccattgcacttctacagCTAAAGAGCAGTATTTCATTCCAGgtaattacatctgtgggaaggaacatcgcaggaaatggccactccaagaa Alignment from Pairagon CCAAAGAGCAGTACTTCATTCCAG tctaactatggtctccaaggagaaatgaacccaccattgcacttctacagCTAAAGAGCAGTATTTCATTCCAGgtaattacatctgtgggaaggaacatcgcaggaaatggccactccaagaa Alignment from Exonerate_protein2genome CCAAAGAGCAGTACTTCATTCCAG tctaactatggtctccaaggagaaatgaacccaccattgcacttctacagCTAAAGAGCAGTATTTCATTCCAGgtaattacatctgtgggaaggaacatcgcaggaaatggccactccaagaa Alignment from Exonerate_coding2genome tctaactatggtctccaaggagaaatgaacccaccattgcacttctacagctaaagagcagtatttcattccaggtaattacatctgtgggaaggaacatcgcaggaaatggccactccaagaa Alignment from GeneWise CCAAAGAGCAGTACTTCATTCCAG tctaactatggtctccaaggagaaatgaacccaccattgcacttctacagCTAAAGAGCAGTATTTCATTCCAGgtaattacatctgtgggaaggaacatcgcaggaaatggccactccaagaa #### Slit1_ID8225_14 --> 1 - 1 Original Alignment gCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAg gacaggtcgccaagactgagtttgcaatttttatcttgctctccctgcaggCATTTGGCCCAGAATCCTTTTATCTGTGATAGTAACCTGAAGTGGCTGGCAGATTTCCTACACACAAATCCCATGAAGACAACTGGGGCTCAATGTGACAGCCCCTGGCGCCTCTCAAACAAGCGTATTGGGCAGATCAAAAGCAATAAATTTCGGTGCTCAggtaaaatgcattgactatccccgagggatgtggaatacaaagttaacata Alignment from CESAR gCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAg gacaggtcgccaagactgagtttgcaatttttatcttgctctccctgcaggCATTTGGCCCAGAATCCTTTTATCTGTGATAGTAACCTGAAGTGGCTGGCAGATTTCCTACACACAAATCCCATGAAGACAACTGGGGCTCAATGTGACAGCCCCTGGCGCCTCTCAAACAAGCGTATTGGGCAGATCAAAAGCAATAAATTTCGGTGCTCAggtaaaatgcattgactatccccgagggatgtggaatacaaagttaacata Alignment from Spaln_aa2Genome GCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAG gacaggtcgccaagactgagtttgcaatttttatcttgctctccctgcagGCATTTGGCCCAGAATCCTTTTATCTGTGATAGTAACCTGAAGTGGCTGGCAGATTTCCTACACACAAATCCCATGAAGACAACTGGGGCTCAATGTGACAGCCCCTGGCGCCTCTCAAACAAGCGTATTGGGCAGATCAAAAGCAATAAATTTCGGTGCTCAGgtaaaatgcattgactatccccgagggatgtggaatacaaagttaacata Alignment from Spaln_nt2Genome GCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAG gacaggtcgccaagactgagtttgcaatttttatcttgctctccctgcagGCATTTGGCCCAGAATCCTTTTATCTGTGATAGTAACCTGAAGTGGCTGGCAGATTTCCTACACACAAATCCCATGAAGACAACTGGGGCTCAATGTGACAGCCCCTGGCGCCTCTCAAACAAGCGTATTGGGCAGATCAAAAGCAATAAATTTCGGTGCTCAGgtaaaatgcattgactatccccgagggatgtggaatacaaagttaacata Alignment from Pairagon GCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAG gacaggtcgccaagactgagtttgcaatttttatcttgctctccctgcagGCATTTGGCCCAGAATCCTTTTATCTGTGATAGTAACCTGAAGTGGCTGGCAGATTTCCTACACACAAATCCCATGAAGACAACTGGGGCTCAATGTGACAGCCCCTGGCGCCTCTCAAACAAGCGTATTGGGCAGATCAAAAGCAATAAATTTCGGTGCTCAGgtaaaatgcattgactatccccgagggatgtggaatacaaagttaacata Alignment from Exonerate_protein2genome GCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAG gacaggtcgccaagactgagtttgcaatttttatcttgctctccctgcagGCATTTGGCCCAGAATCCTTTTATCTGTGATAGTAACCTGAAGTGGCTGGCAGATTTCCTACACACAAATCCCATGAAGACAACTGGGGCTCAATGTGACAGCCCCTGGCGCCTCTCAAACAAGCGTATTGGGCAGATCAAAAGCAATAAATTTCGGTGCTCAGgtaaaatgcattgactatccccgagggatgtggaatacaaagttaacata Alignment from Exonerate_coding2genome GCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAGCCAAAGAGCAGTACTTCATTCC gacaggtcgccaagactgagtttgcaatttttatcttgctctccctgcagGCATTTGGCCCAGAATCCTTTTATCTGTGATAGTAACCTGAAGTGGCTGGCAGATTTCCTACACACAAATCCCATGAAGACAACTGGGGCTCAATGTGACAGCCCCTGGCGCCTCTCAAACAAGCGTATTGGGCAGATCAAAAGCAATAAATTTCGGTGCTCAGGTAAAATGCATTGACTATCCCCgagggatgtggaatacaaagttaacata Alignment from GeneWise GCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAG gacaggtcgccaagactgagtttgcaatttttatcttgctctccctgcagGCATTTGGCCCAGAATCCTTTTATCTGTGATAGTAACCTGAAGTGGCTGGCAGATTTCCTACACACAAATCCCATGAAGACAACTGGGGCTCAATGTGACAGCCCCTGGCGCCTCTCAAACAAGCGTATTGGGCAGATCAAAAGCAATAAATTTCGGTGCTCAGgtaaaatgcattgactatccccgagggatgtggaatacaaagttaacata #### Slit1_ID8227_12 --> 1 - 2 Original Alignment gGTCCTCTATGGCAACAAGATTACAGACCTGCCCCGAGGTGTATTTGGAGGCCTGTACACACTCCAGCTGct tcattttagtgcatacatccctatacttctgctccccccactctccccaggGTACTTTATGGGAATAAGATTACTGACCTCCCCCATGGTGTATTTGGGGGCTTGTATACACTCCAGTTGctgtgagttaatcgggactgtatactatctacctaatgaatccattgcaaca Alignment from CESAR gGTCCTCTATGGCAACAAGATTACAGACCTGCCCCGAGGTGTATTTGGAGGCCTGTACACACTCCAGCTGct tcattttagtgcatacatccctatacttctgctccccccactctccccaggGTACTTTATGGGAATAAGATTACTGACCTCCCCCATGGTGTATTTGGGGGCTTGTATACACTCCAGTTGctgtgagttaatcgggactgtatactatctacctaatgaatccattgcaaca Alignment from Spaln_aa2Genome GGTCCTCTATGGCAACAAGATTACAGACCTGCCCCGAGGTGTATTTGGAGGCCTGTACACACTCCAGCTGCT tcattttagtgcatacatccctatacttctgctccccccactctccccagGGTACTTTATGGGAATAAGATTACTGACCTCCCCCATGGTGTATTTGGGGGCTTGTATACACTCCAGTTGCTgtgagttaatcgggactgtatactatctacctaatgaatccattgcaaca Alignment from Spaln_nt2Genome GGTCCTCTATGGCAACAAGATTACAGACCTGCCCCGAGGTGTATTTGGAGGCCTGTACACACTCCAGCTGCT tcattttagtgcatacatccctatacttctgctccccccactctccccagGGTACTTTATGGGAATAAGATTACTGACCTCCCCCATGGTGTATTTGGGGGCTTGTATACACTCCAGTTGCTgtgagttaatcgggactgtatactatctacctaatgaatccattgcaaca Alignment from Pairagon GGTCCTCTATGGCAACAAGATTACAGACCTGCCCCGAGGTGTATTTGGAGGCCTGTACACACTCCAGCTGCT tcattttagtgcatacatccctatacttctgctccccccactctccccagGGTACTTTATGGGAATAAGATTACTGACCTCCCCCATGGTGTATTTGGGGGCTTGTATACACTCCAGTTGCTgtgagttaatcgggactgtatactatctacctaatgaatccattgcaaca Alignment from Exonerate_protein2genome GGTCCTCTATGGCAACAAGATTACAGACCTGCCCCGAGGTGTATTTGGAGGCCTGTACACACTCCAGCTGCT tcattttagtgcatacatccctatacttctgctccccccactctccccagGGTACTTTATGGGAATAAGATTACTGACCTCCCCCATGGTGTATTTGGGGGCTTGTATACACTCCAGTTGCTgtgagttaatcgggactgtatactatctacctaatgaatccattgcaaca Alignment from Exonerate_coding2genome GGTCCTCTATGGCAACAAGATTACAGACCTGCCCCGAGGTGTATTTGGAGGCCTGTACACACTCCAGCTGCT tcattttagtgcatacatccctatacttctgctccccccactctccccagGGTACTTTATGGGAATAAGATTACTGACCTCCCCCATGGTGTATTTGGGGGCTTGTATACACTCCAGTTGCTgtgagttaatcgggactgtatactatctacctaatgaatccattgcaaca Alignment from GeneWise GGTCCTCTATGGCAACAAGATTACAGACCTGCCCCGAGGTGTATTTGGAGGCCTGTACACACTCCAGCTGCT tcattttagtgcatacatccctatacttctgctccccccactctccccagGGTACTTTATGGGAATAAGATTACTGACCTCCCCCATGGTGTATTTGGGGGCTTGTATACACTCCAGTTGCTgtgagttaatcgggactgtatactatctacctaatgaatccattgcaaca #### Slit1_ID8231_8 --> 1 - 1 Original Alignment cCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAg aaagttcctctatgtgggccccaagaatcttaccttcgacccctttgcagtCGGCTGCACACCAACCAACTGTCCTGTGACTGTCATCTCGCCTGGCTCTCTCACTGGCTGAGACAGAGGCCTACTGTTGGCCTATTTACCCAATGCTCAGGGCCAGTTAGCCTTCGGGGCCTCAATGTGACAGAAGTTCAAAAGGGTGAATTTAGCTGCTCAggtacaggcttgtgtcatctggcttccctcattgagtttttcctttccagt Alignment from CESAR cCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAg aaagttcctctatgtgggccccaagaatcttaccttcgacccctttgcagtCGGCTGCACACCAACCAACTGTCCTGTGACTGTCATCTCGCCTGGCTCTCTCACTGGCTGAGACAGAGGCCTACTGTTGGCCTATTTACCCAATGCTCAGGGCCAGTTAGCCTTCGGGGCCTCAATGTGACAGAAGTTCAAAAGGGTGAATTTAGCTGCTCAggtacaggcttgtgtcatctggcttccctcattgagtttttcctttccagt Alignment from Spaln_aa2Genome CCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAG aaagttcctctatgtgggccccaagaatcttaccttcgacccctttgcagTCGGCTGCACACCAACCAACTGTCCTGTGACTGTCATCTCGCCTGGCTCTCTCACTGGCTGAGACAGAGGCCTACTGTTGGCCTATTTACCCAATGCTCAGGGCCAGTTAGCCTTCGGGGCCTCAATGTGACAGAAGTTCAAAAGGGTGAATTTAGCTGCTCAGgtacaggcttgtgtcatctggcttccctcattgagtttttcctttccagt Alignment from Spaln_nt2Genome CCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAG aaagttcctctatgtgggccccaagaatcttaccttcgacccctttgcagTCGGCTGCACACCAACCAACTGTCCTGTGACTGTCATCTCGCCTGGCTCTCTCACTGGCTGAGACAGAGGCCTACTGTTGGCCTATTTACCCAATGCTCAGGGCCAGTTAGCCTTCGGGGCCTCAATGTGACAGAAGTTCAAAAGGGTGAATTTAGCTGCTCAGgtacaggcttgtgtcatctggcttccctcattgagtttttcctttccagt Alignment from Pairagon CCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAG aaagttcctctatgtgggccccaagaatcttaccttcgacccctttgcagTCGGCTGCACACCAACCAACTGTCCTGTGACTGTCATCTCGCCTGGCTCTCTCACTGGCTGAGACAGAGGCCTACTGTTGGCCTATTTACCCAATGCTCAGGGCCAGTTAGCCTTCGGGGCCTCAATGTGACAGAAGTTCAAAAGGGTGAATTTAGCTGCTCAGgtacaggcttgtgtcatctggcttccctcattgagtttttcctttccagt Alignment from Exonerate_protein2genome CCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAG aaagttcctctatgtgggccccaagaatcttaccttcgacccctttgcagTCGGCTGCACACCAACCAACTGTCCTGTGACTGTCATCTCGCCTGGCTCTCTCACTGGCTGAGACAGAGGCCTACTGTTGGCCTATTTACCCAATGCTCAGGGCCAGTTAGCCTTCGGGGCCTCAATGTGACAGAAGTTCAAAAGGGTGAATTTAGCTGCTCAGgtacaggcttgtgtcatctggcttccctcattgagtttttcctttccagt Alignment from Exonerate_coding2genome CGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAG aaagttcctctatgtgggccccaagaatcttaccttcgacccctttgcagtCGGCTGCACACCAACCAACTGTCCTGTGACTGTCATCTCGCCTGGCTCTCTCACTGGCTGAGACAGAGGCCTACTGTTGGCCTATTTACCCAATGCTCAGGGCCAGTTAGCCTTCGGGGCCTCAATGTGACAGAAGTTCAAAAGGGTGAATTTAGCTGCTCAGgtacaggcttgtgtcatctggcttccctcattgagtttttcctttccagt Alignment from GeneWise CCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAG aaagttcctctatgtgggccccaagaatcttaccttcgacccctttgcagTCGGCTGCACACCAACCAACTGTCCTGTGACTGTCATCTCGCCTGGCTCTCTCACTGGCTGAGACAGAGGCCTACTGTTGGCCTATTTACCCAATGCTCAGGGCCAGTTAGCCTTCGGGGCCTCAATGTGACAGAAGTTCAAAAGGGTGAATTTAGCTGCTCAGgtacaggcttgtgtcatctggcttccctcattgagtttttcctttccagt #### Slit1_ID8234_5 --> 1 - 2 Original Alignment gGACCTGAGTGAGAATTTTCTCCAGGCTGTGCCCAGGAAGGCTTTTCGGGGAGCCACAGACCTCAAAAATct cacactatccattgcacacaatcaaaattacttgttactcattggcacaggGACCTGAGTGAGAATTTTATTCAG------CCC---AAGGCTTTTCGTGGGGTGACAGACCTTAAAAATctgtgagcagggatttgcaatgatgttatggagacatcctgtccttactgat Alignment from CESAR gGACCTGAGTGAGAATTTTCTCCAGGCTGTGCCCAGGAAGGCTTTTCGGGGAGCCACAGACCTCAAAAATct cacactatccattgcacacaatcaaaattacttgttactcattggcacaggGACCTGAGTGAGAATTTTATTCAGCCC---------AAGGCTTTTCGTGGGGTGACAGACCTTAAAAATctgtgagcagggatttgcaatgatgttatggagacatcctgtccttactgat Alignment from Spaln_aa2Genome GGACCTGAGTGAGAATTTTCTCCAGGCTGTGCCCAGGAAGGCTTTTCGGGGAGCCACAGACCTCAAAAATCT cacactatccattgcacacaatcaaaattacttgttactcattggcacagGGACCTGAGTGAGAATTTTATTCAGCCC---------AAGGCTTTTCGTGGGGTGACAGACCTTAAAAATCTgtgagcagggatttgcaatgatgttatggagacatcctgtccttactgat Alignment from Spaln_nt2Genome GGACCTGAGTGAGAATTTTCTCCAGGCTGTGCCCAGGAAGGCTTTTCGGGGAGCCACAGACCTCAAAAATCT cacactatccattgcacacaatcaaaattacttgttactcattggcacagGGACCTGAGTGAGAATTTTATTCA------GCCC---AAGGCTTTTCGTGGGGTGACAGACCTTAAAAATCTgtgagcagggatttgcaatgatgttatggagacatcctgtccttactgat Alignment from Pairagon GGACCTGAGTGAGAATTTTCTCCAGGCTGTGCCCAGGAAGGCTTTTCGGGGAGCCACAGACCTCAAAAATCT cacactatccattgcacacaatcaaaattacttgttactcattggcacagGGACCTGAGTGAGAATTTTATTCAGCCC---------AAGGCTTTTCGTGGGGTGACAGACCTTAAAAATCTgtgagcagggatttgcaatgatgttatggagacatcctgtccttactgat Alignment from Exonerate_protein2genome GGACCTGAGTGAGAATTTTCTCCAGGCTGTGCCCAGGAAGGCTTTTCGGGGAGCCACAGACCTCAAAAATCT cacactatccattgcacacaatcaaaattacttgttactcattggcacagGGACCTGAGTGAGAATTTTATTCAGCCC---------AAGGCTTTTCGTGGGGTGACAGACCTTAAAAATCTgtgagcagggatttgcaatgatgttatggagacatcctgtccttactgat Alignment from Exonerate_coding2genome cacactatccattgcacacaatcaaaattacttgttactcattggcacagggacctgagtgagaattttattcagcccaaggcttttcgtggggtgacagaccttaaaaatctgtgagcagggatttgcaatgatgttatggagacatcctgtccttactgat Alignment from GeneWise GGACCTGAGTGAGAATTTTCTCCAGGCTGTGCCCAGGAAGGCTTTTCGGGGAGCCACAGACCTCAAAAATCT cacactatccattgcacacaatcaaaattacttgttactcattggcacagGGACCTGAGTGAGAATTTTATTCAGCCC---------AAGGCTTTTCGTGGGGTGACAGACCTTAAAAATCTgtgagcagggatttgcaatgatgttatggagacatcctgtccttactgat #### Slk_ID10250_6 --> 1 - 2 Original Alignment gATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAAtg atttgataactatcttgaatatctgcccttatgccttgttgctctcccaggATGTCTCCTGAAGTGGTCATGTGTGAAACATCCAAGGACACACCTTATGATTACAAAGCTGATGTTTGGTCTCTGGGTATAACTTTAATAGAAATGGTTGAAATAGCACCACCTCATCATGACTTAAATCCTATGCGTGTGCTGCTGAAGATTGCAAAATTTGCGCCCCCAACACTGGCCCAGCCATCCAAGttgtgagttaatgctattggaccaaacctaggactggttatccaaatggcta Alignment from CESAR gATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAAtg atttgataactatcttgaatatctgcccttatgccttgttgctctcccaggATGTCTCCTGAAGTGGTCATGTGTGAAACATCCAAGGACACACCTTATGATTACAAAGCTGATGTTTGGTCTCTGGGTATAACTTTAATAGAAATGGTTGAAATAGCACCACCTCATCATGACTTAAATCCTATGCGTGTGCTGCTGAAGATTGCAAAATTTGCGCCCCCAACACTGGCCCAGCCATCCAAGttgtgagttaatgctattggaccaaacctaggactggttatccaaatggcta Alignment from Spaln_aa2Genome GATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAATG atttgataactatcttgaatatctgcccttatgccttgttgctctcccagGATGTCTCCTGAAGTGGTCATGTGTGAAACATCCAAGGACACACCTTATGATTACAAAGCTGATGTTTGGTCTCTGGGTATAACTTTAATAGAAATGGTTGAAATAGCACCACCTCATCATGACTTAAATCCTATGCGTGTGCTGCTGAAGATTGCAAAATTTGCGCCCCCAACACTGGCCCAGCCATCCAAGTTgtgagttaatgctattggaccaaacctaggactggttatccaaatggcta Alignment from Spaln_nt2Genome GATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAATG atttgataactatcttgaatatctgcccttatgccttgttgctctcccagGATGTCTCCTGAAGTGGTCATGTGTGAAACATCCAAGGACACACCTTATGATTACAAAGCTGATGTTTGGTCTCTGGGTATAACTTTAATAGAAATGGTTGAAATAGCACCACCTCATCATGACTTAAATCCTATGCGTGTGCTGCTGAAGATTGCAAAATTTGCGCCCCCAACACTGGCCCAGCCATCCAAGTTgtgagttaatgctattggaccaaacctaggactggttatccaaatggcta Alignment from Pairagon GATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAATG atttgataactatcttgaatatctgcccttatgccttgttgctctcccagGATGTCTCCTGAAGTGGTCATGTGTGAAACATCCAAGGACACACCTTATGATTACAAAGCTGATGTTTGGTCTCTGGGTATAACTTTAATAGAAATGGTTGAAATAGCACCACCTCATCATGACTTAAATCCTATGCGTGTGCTGCTGAAGATTGCAAAATTTGCGCCCCCAACACTGGCCCAGCCATCCAAGTTgtgagttaatgctattggaccaaacctaggactggttatccaaatggcta Alignment from Exonerate_protein2genome GATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAATG atttgataactatcttgaatatctgcccttatgccttgttgctctcccagGATGTCTCCTGAAGTGGTCATGTGTGAAACATCCAAGGACACACCTTATGATTACAAAGCTGATGTTTGGTCTCTGGGTATAACTTTAATAGAAATGGTTGAAATAGCACCACCTCATCATGACTTAAATCCTATGCGTGTGCTGCTGAAGATTGCAAAATTTGCGCCCCCAACACTGGCCCAGCCATCCAAGTTgtgagttaatgctattggaccaaacctaggactggttatccaaatggcta Alignment from Exonerate_coding2genome ATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAATG atttgataactatcttgaatatctgcccttatgccttgttgctctcccaggATGTCTCCTGAAGTGGTCATGTGTGAAACATCCAAGGACACACCTTATGATTACAAAGCTGATGTTTGGTCTCTGGGTATAACTTTAATAGAAATGGTTGAAATAGCACCACCTCATCATGACTTAAATCCTATGCGTGTGCTGCTGAAGATTGCAAAATTTGCGCCCCCAACACTGGCCCAGCCATCCAAGTTgtgagttaatgctattggaccaaacctaggactggttatccaaatggcta Alignment from GeneWise GATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAATG atttgataactatcttgaatatctgcccttatgccttgttgctctcccagGATGTCTCCTGAAGTGGTCATGTGTGAAACATCCAAGGACACACCTTATGATTACAAAGCTGATGTTTGGTCTCTGGGTATAACTTTAATAGAAATGGTTGAAATAGCACCACCTCATCATGACTTAAATCCTATGCGTGTGCTGCTGAAGATTGCAAAATTTGCGCCCCCAACACTGGCCCAGCCATCCAAGTTgtgagttaatgctattggaccaaacctaggactggttatccaaatggcta #### Slk_ID10253_9 --> 0 - 0 Original Alignment CCAATACCTGCAAATAAACGTGCCTCCTCTGACCTCAGCATTGCCAGCTCTGAAGAAGATAAACTTTCACAAAATGCTTGTATTTTGGAATCTGTGTCAGAAAGAACAGAACAAAGTACTTCTGAGGATAAATTTAGCAACAAAATTCTTAATGAGAAACCTACGACTGACGGTCCTGAGAAGGCTGTGGATGAGCATGCAAGTGATGTGAACTTAGAAACTGGGGCTGAACTAAATGACCAAACAGTAGGAATCCATGAGAATGGGAGAGAGAAGAAAAGACCCAAGCTGGAAAATCTGCCAGATACACAAGACCAGCAAACTGTGGATGTTAATTCAGTCAGTGAAGAAAATGAGAATAATAGAGTAACTTTAGAAACGAACACTGATTGTCTGAAACCAGAGGAAGACAGAAATAAAGAAAACCAAGAGACACTTGAGAGTAAACTTATACAATCTGAAGAAATTAATGACACACATATTCAAACAATGGACTTAGTTTCTCAAGAGACTGGAGAAAAAGAAGCAGATTTTCAGGCAGTTGACAATGAAGTTGGGCTTACAAAGGAAGAAACCCAAGAGAAATTAGGAAAAGATGGTACAGCTCAAAAAGTTATAACCAGTGATAGAAGCAGTGAGGTGGGGACAGACGAGGCTCTAGATGACACTCAGAAGGCTGCTGAGCTCAGTAAGGCAGCACAGAGTGGGGAAGGGGACGAAGCCCTGGCGCCTACCCAGACACTAGCAGAGAAGCCCACAGAGGGCCCTGAGGCCGGTGGGGCTGAGGAAGAGCCTCCTGGTGGAGAGAGAGTTGAGGATAAACAGCCAGAGCAGCAGCCTGCAGTGTGTGAAGCTGAGGGACAGTTAACCAGCACGTCAGAGACCACACGGGCAACCCTGGAGCAACCGGAGACGGATGAAGTTGAGCAGGTCAGCGAGTCCAATAGCATTGAGGAGCTAGAGAGACTTGTAGTTACTGGTGCTGAGGCACGGGCTCTCGGGAGTGAAGGTGAGGCAGCTGCTACTGAGGTAGATTTGGAGAGAAAAGAAAACGCACAGAAAGTGCCCGTTAAAGCAGAGTCCCAAGCTCCTGCAGCATCGCAGCCCAGCGAGCCTCACCCTGTCTTAATACCCAGTATTAATATT------AATTCTGAAACCACAGAAAATAAAGAAGAAATGGGTGCTTTGCCAAAACCTGAAACCATACTGCCACCAGAGCCTGAACATGAAAAGGGAAATGACACCGACTCAGGGACT---GGGTCCACTGTGGAGAATAGCAGTGGTGACCTGAACTTGTCCATCTCTAGCTTCCTAAGCAAAGCTAAGGACAGCGGCTCAGTGTCTCTGCAG cttaagaaccagtgtggcacatggctatgcctgctttgctttgctttcagCCAATACCTGCAAACAAGCGTGGCTCCTCTGACCTCATCATTGCCAGCACTAAGGAAGAAAAACTTTCACAAAAAGCGTGCATTTTGGAATCAGTATCAAAAAGAGCTGAACAGGGCACTTCAGAGGATAAATTCAGCAATGAGATTCTTAACAAGAAACCTACCACTGATGGTCCTAAGAAGGCAGTGGATGAGCATGCTAGTGATGTGAACTTAGAAACTGGAGCTGAATCAAATGACCAAACTATCGGAATCCATGAAAATGGTAGAGAAAAGAAACGACCGAAACTGGAAATCCTACCAGATTCCCGAGAG------ACTGTTGAGGTAAATTCAGTCAGTGAAGGA---AAGAATAATAGGGTAATTTTGGAAACAAACACCGATTGTCTTAAACCAGAGGAAGACAGAAACAAAAAAAACCAAGAGAAACTAGAGGGTCAGCTTATAAAATCTCAGGAAATCAATGACTCACACATTCAAACAATGGACTTGGTTTCTCAAGAGACTGGGGAAAAAGAA---GACTTTCAGGCAATTGACAATGAGGTTGGACTTGCTAAAGAAGAAACA------CAGCTAGGGAAAGAT---GCAGCACAAAAGGTTACAACCAGTGATAGAAGCAGTGAAGTGGGGACAGACAAGGCCCTAGATGACACTCAAAAAGCTGCTGAGCTAAGTAAGGCAACACAAAGTGGAGAAGGAGATGAGACACTGGCACCCACTCAGTCATTAGCAGAAAAGCCAACAGAAGGACCAGACACTGGTGGGGCAGATGAAGAGCCACCTGGTGGAGAGAGGATTGAGGACAGACAACCAGAACAGAAGCCTACAGTATGTAAAGCTGAGGGTCAGTTA---------------ACTACCAGGGCAACCTTGAAGCAACCAGACACACATGAAGTTGGACAGGTGAGTGAGTCCAATAGCATCGAAGAGCTAGAGAGGCTCGTAGTCACAGGTGCTGAGGCCCGTGTTCTTGATAGTAAAGGAGAGGCGGCCGCAACTGAAGTGGATTTAGAAAGAAAAGAAAATAAACGAAAAGTACCAGTTAAAGCAGAGTCTCAAGCACCCGCTGCCTTACAGCCTAGTGAGCCTCACCCTGTGTTGATACCTAGTATTAATATAAATGTCAATTCTGAGACC------AACCAAGAAGAAATGGGGGCCTTACCAAAGCCTGACACAATATTACCTCCAGAGCCTGAACAAGAAAAGGGAAATGATCCTGAGTCAGGGACTACTGGGTCCACTGTAGAGAACAGCAGTGGTGACTTG------CCTATCTCCAGCTTCCTAAGTAAAGCTAAGCATAGTGGCTTAGTCTCTCTACAGgtacgttgcttagtcgtggtttttcctaaatcatcctgtccattatttca Alignment from CESAR CCAATACCTGCAAATAAACGTGCCTCCTCTGACCTCAGCATTGCCAGCTCTGAAGAAGATAAACTTTCACAAAATGCTTGTATTTTGGAATCTGTGTCAGAAAGAACAGAACAAAGTACTTCTGAGGATAAATTTAGCAACAAAATTCTTAATGAGAAACCTACGACTGACGGTCCTGAGAAGGCTGTGGATGAGCATGCAAGTGATGTGAACTTAGAAACTGGGGCTGAACTAAATGACCAAACAGTAGGAATCCATGAGAATGGGAGAGAGAAGAAAAGACCCAAGCTGGAAAATCTGCCAGATACACAAGACCAGCAAACTGTGGATGTTAATTCAGTCAGTGAAGAAAATGAGAATAATAGAGTAACTTTAGAAACGAACACTGATTGTCTGAAACCAGAGGAAGACAGAAATAAAGAAAACCAAGAGACACTTGAGAGTAAACTTATACAATCTGAAGAAATTAATGACACACATATTCAAACAATGGACTTAGTTTCTCAAGAGACTGGAGAAAAAGAAGCAGATTTTCAGGCAGTTGACAATGAAGTTGGGCTTACAAAGGAAGAAACCCAAGAGAAATTAGGAAAAGATGGTACAGCTCAAAAAGTTATAACCAGTGATAGAAGCAGTGAGGTGGGGACAGACGAGGCTCTAGATGACACTCAGAAGGCTGCTGAGCTCAGTAAGGCAGCACAGAGTGGGGAAGGGGACGAAGCCCTGGCGCCTACCCAGACACTAGCAGAGAAGCCCACAGAGGGCCCTGAGGCCGGTGGGGCTGAGGAAGAGCCTCCTGGTGGAGAGAGAGTTGAGGATAAACAGCCAGAGCAGCAGCCTGCAGTGTGTGAAGCTGAGGGACAGTTAACCAGCACGTCAGAGACCACACGGGCAACCCTGGAGCAACCGGAGACGGATGAAGTTGAGCAGGTCAGCGAGTCCAATAGCATTGAGGAGCTAGAGAGACTTGTAGTTACTGGTGCTGAGGCACGGGCTCTCGGGAGTGAAGGTGAGGCAGCTGCTACTGAGGTAGATTTGGAGAGAAAAGAAAACGCACAGAAAGTGCCCGTTAAAGCAGAGTCCCAAGCTCCTGCAGCATCGCAGCCCAGCGAGCCTCACCCTGTCTTAATACCCAGTATTAATATT------AATTCTGAAACCACAGAAAATAAAGAAGAAATGGGTGCTTTGCCAAAACCTGAAACCATACTGCCACCAGAGCCTGAACATGAAAAGGGAAATGACACCGACTCAGGG---ACTGGGTCCACTGTGGAGAATAGCAGTGGTGACCTGAACTTGTCCATCTCTAGCTTCCTAAGCAAAGCTAAGGACAGCGGCTCAGTGTCTCTGCAG cttaagaaccagtgtggcacatggctatgcctgctttgctttgctttcagCCAATACCTGCAAACAAGCGTGGCTCCTCTGACCTCATCATTGCCAGCACTAAGGAAGAAAAACTTTCACAAAAAGCGTGCATTTTGGAATCAGTATCAAAAAGAGCTGAACAGGGCACTTCAGAGGATAAATTCAGCAATGAGATTCTTAACAAGAAACCTACCACTGATGGTCCTAAGAAGGCAGTGGATGAGCATGCTAGTGATGTGAACTTAGAAACTGGAGCTGAATCAAATGACCAAACTATCGGAATCCATGAAAATGGTAGAGAAAAGAAACGACCGAAACTGGAAATCCTACCAGATTCCCGAGAG------ACTGTTGAGGTAAATTCAGTCAGTGAAGGAAAG---AATAATAGGGTAATTTTGGAAACAAACACCGATTGTCTTAAACCAGAGGAAGACAGAAACAAAAAAAACCAAGAGAAACTAGAGGGTCAGCTTATAAAATCTCAGGAAATCAATGACTCACACATTCAAACAATGGACTTGGTTTCTCAAGAGACTGGGGAAAAAGAA---GACTTTCAGGCAATTGACAATGAGGTTGGACTTGCTAAAGAAGAAACACAG------CTAGGGAAAGAT---GCAGCACAAAAGGTTACAACCAGTGATAGAAGCAGTGAAGTGGGGACAGACAAGGCCCTAGATGACACTCAAAAAGCTGCTGAGCTAAGTAAGGCAACACAAAGTGGAGAAGGAGATGAGACACTGGCACCCACTCAGTCATTAGCAGAAAAGCCAACAGAAGGACCAGACACTGGTGGGGCAGATGAAGAGCCACCTGGTGGAGAGAGGATTGAGGACAGACAACCAGAACAGAAGCCTACAGTATGTAAAGCTGAGGGTCAGTTA---------------ACTACCAGGGCAACCTTGAAGCAACCAGACACACATGAAGTTGGACAGGTGAGTGAGTCCAATAGCATCGAAGAGCTAGAGAGGCTCGTAGTCACAGGTGCTGAGGCCCGTGTTCTTGATAGTAAAGGAGAGGCGGCCGCAACTGAAGTGGATTTAGAAAGAAAAGAAAATAAACGAAAAGTACCAGTTAAAGCAGAGTCTCAAGCACCCGCTGCCTTACAGCCTAGTGAGCCTCACCCTGTGTTGATACCTAGTATTAATATAAATGTCAATTCTGAGACC------AACCAAGAAGAAATGGGGGCCTTACCAAAGCCTGACACAATATTACCTCCAGAGCCTGAACAAGAAAAGGGAAATGATCCTGAGTCAGGGACTACTGGGTCCACTGTAGAGAACAGCAGTGGTGAC------TTGCCTATCTCCAGCTTCCTAAGTAAAGCTAAGCATAGTGGCTTAGTCTCTCTACAGgtacgttgcttagtcgtggtttttcctaaatcatcctgtccattatttca Alignment from Spaln_aa2Genome CCAATACCTGCAAATAAACGTGCCTCCTCTGACCTCAGCATTGCCAGCTCTGAAGAAGATAAACTTTCACAAAATGCTTGTATTTTGGAATCTGTGTCAGAAAGAACAGAACAAAGTACTTCTGAGGATAAATTTAGCAACAAAATTCTTAATGAGAAACCTACGACTGACGGTCCTGAGAAGGCTGTGGATGAGCATGCAAGTGATGTGAACTTAGAAACTGGGGCTGAACTAAATGACCAAACAGTAGGAATCCATGAGAATGGGAGAGAGAAGAAAAGACCCAAGCTGGAAAATCTGCCAGATACACAAGACCAGCAAACTGTGGATGTTAATTCAGTCAGTGAAGAAAATGAGAATAATAGAGTAACTTTAGAAACGAACACTGATTGTCTGAAACCAGAGGAAGACAGAAATAAAGAAAACCAAGAGACACTTGAGAGTAAACTTATACAATCTGAAGAAATTAATGACACACATATTCAAACAATGGACTTAGTTTCTCAAGAGACTGGAGAAAAAGAAGCAGATTTTCAGGCAGTTGACAATGAAGTTGGGCTTACAAAGGAAGAAACCCAAGAGAAATTAGGAAAAGATGGTACAGCTCAAAAAGTTATAACCAGTGATAGAAGCAGTGAGGTGGGGACAGACGAGGCTCTAGATGACACTCAGAAGGCTGCTGAGCTCAGTAAGGCAGCACAGAGTGGGGAAGGGGACGAAGCCCTGGCGCCTACCCAGACACTAGCAGAGAAGCCCACAGAGGGCCCTGAGGCCGGTGGGGCTGAGGAAGAGCCTCCTGGTGGAGAGAGAGTTGAGGATAAACAGCCAGAGCAGCAGCCTGCAGTGTGTGAAGCTGAGGGACAGTTAACCAGCACGTCAGAGACCACACGGGCAACCCTGGAGCAACCGGAGACGGATGAAGTTGAGCAGGTCAGCGAGTCCAATAGCATTGAGGAGCTAGAGAGACTTGTAGTTACTGGTGCTGAGGCACGGGCTCTCGGGAGTGAAGGTGAGGCAGCTGCTACTGAGGTAGATTTGGAGAGAAAAGAAAACGCACAGAAAGTGCCCGTTAAAGCAGAGTCCCAAGCTCCTGCAGCATCGCAGCCCAGCGAGCCTCACCCTGTCTTAATACCCAGTATTAATATTAATTCTGAAACCACAGAAAATAAAGAAGAAATGGGTGCTTTGCCAAAACCTGAAACCATACTGCCACCAGAGCCTGAACATGAAAAGGGAAATGACACCGACTCAGGG---ACTGGGTCCACTGTGGAGAATAGCAGTGGTGACCTGAACTTGTCCATCTCTAGCTTCCTAAGCAAAGCTAAGGACAGCGGCTCAGTGTCTCTGCAG cttaagaaccagtgtggcacatggctatgcctgctttgctttgctttcagCCAATACCTGCAAACAAGCGTGGCTCCTCTGACCTCATCATTGCCAGCACTAAGGAAGAAAAACTTTCACAAAAAGCGTGCATTTTGGAATCAGTATCAAAAAGAGCTGAACAGGGCACTTCAGAGGATAAATTCAGCAATGAGATTCTTAACAAGAAACCTACCACTGATGGTCCTAAGAAGGCAGTGGATGAGCATGCTAGTGATGTGAACTTAGAAACTGGAGCTGAATCAAATGACCAAACTATCGGAATCCATGAAAATGGTAGAGAAAAGAAACGACCGAAACTGGAAATCCTACCAGATTCCCGAGAG------ACTGTTGAGGTAAATTCAGTCAGTGAAGGAAAG---AATAATAGGGTAATTTTGGAAACAAACACCGATTGTCTTAAACCAGAGGAAGACAGAAACAAAAAAAACCAAGAGAAACTAGAGGGTCAGCTTATAAAATCTCAGGAAATCAATGACTCACACATTCAAACAATGGACTTGGTTTCTCAAGAGACTGGGGAAAAAGAA---GACTTTCAGGCAATTGACAATGAGGTTGGACTTGCTAAAGAAGAAACACAG------CTAGGGAAAGAT---GCAGCACAAAAGGTTACAACCAGTGATAGAAGCAGTGAAGTGGGGACAGACAAGGCCCTAGATGACACTCAAAAAGCTGCTGAGCTAAGTAAGGCAACACAAAGTGGAGAAGGAGATGAGACACTGGCACCCACTCAGTCATTAGCAGAAAAGCCAACAGAAGGACCAGACACTGGTGGGGCAGATGAAGAGCCACCTGGTGGAGAGAGGATTGAGGACAGACAACCAGAACAGAAGCCTACAGTATGTAAAGCTGAGGGTCAGTTA---------------ACTACCAGGGCAACCTTGAAGCAACCAGACACACATGAAGTTGGACAGGTGAGTGAGTCCAATAGCATCGAAGAGCTAGAGAGGCTCGTAGTCACAGGTGCTGAGGCCCGTGTTCTTGATAGTAAAGGAGAGGCGGCCGCAACTGAAGTGGATTTAGAAAGAAAAGAAAATAAACGAAAAGTACCAGTTAAAGCAGAGTCTCAAGCACCCGCTGCCTTACAGCCTAGTGAGCCTCACCCTGTGTTGATACCTAGTATTAATATAAATGTCAATTCTGAGACCAACCAAGAAGAAATGGGGGCCTTACCAAAGCCTGACACAATATTACCTCCAGAGCCTGAACAAGAAAAGGGAAATGATCCTGAGTCAGGGACTACTGGGTCCACTGTAGAGAACAGCAGTGGTGAC------TTGCCTATCTCCAGCTTCCTAAGTAAAGCTAAGCATAGTGGCTTAGTCTCTCTACAGgtacgttgcttagtcgtggtttttcctaaatcatcctgtccattatttca Alignment from Spaln_nt2Genome CCAATACCTGCAAATAAACGTGCCTCCTCTGACCTCAGCATTGCCAGCTCTGAAGAAGATAAACTTTCACAAAATGCTTGTATTTTGGAATCTGTGTCAGAAAGAACAGAACAAAGTACTTCTGAGGATAAATTTAGCAACAAAATTCTTAATGAGAAACCTACGACTGACGGTCCTGAGAAGGCTGTGGATGAGCATGCAAGTGATGTGAACTTAGAAACTGGGGCTGAACTAAATGACCAAACAGTAGGAATCCATGAGAATGGGAGAGAGAAGAAAAGACCCAAGCTGGAAAATCTGCCAGATACACAAGACCAGCAAACTGTGGATGTTAATTCAGTCAGTGAAGAAAATGAGAATAATAGAGTAACTTTAGAAACGAACACTGATTGTCTGAAACCAGAGGAAGACAGAAATAAAGAAAACCAAGAGACACTTGAGAGTAAACTTATACAATCTGAAGAAATTAATGACACACATATTCAAACAATGGACTTAGTTTCTCAAGAGACTGGAGAAAAAGAAGCAGATTTTCAGGCAGTTGACAATGAAGTTGGGCTTACAAAGGAAGAAACCCAAGAGAAATTAGGAAAAGATGGTACAGCTCAAAAAGTTATAACCAGTGATAGAAGCAGTGAGGTGGGGACAGACGAGGCTCTAGATGACACTCAGAAGGCTGCTGAGCTCAGTAAGGCAGCACAGAGTGGGGAAGGGGACGAAGCCCTGGCGCCTACCCAGACACTAGCAGAGAAGCCCACAGAGGGCCCTGAGGCCGGTGGGGCTGAGGAAGAGCCTCCTGGTGGAGAGAGAGTTGAGGATAAACAGCCAGAGCAGCAGCCTGCAGTGTGTGAAGCTGAGGGACAGTTAACCAGCACGTCAGAGACCACACGGGCAACCCTGGAGCAACCGGAGACGGATGAAGTTGAGCAGGTCAGCGAGTCCAATAGCATTGAGGAGCTAGAGAGACTTGTAGTTACTGGTGCTGAGGCACGGGCTCTCGGGAGTGAAGGTGAGGCAGCTGCTACTGAGGTAGATTTGGAGAGAAAAGAAAACGCACAGAAAGTGCCCGTTAAAGCAGAGTCCCAAGCTCCTGCAGCATCGCAGCCCAGCGAGCCTCACCCTGTCTTAATACCCAGTATTAATATTAATTCTGAAACCACAGAAAATAAAGAAGAAATGGGTGCTTTGCCAAAACCTGAAACCATACTGCCACCAGAGCCTGAACATGAAAAGGGAAATGACACCGACTCAGGG---ACTGGGTCCACTGTGGAGAATAGCAGTGGTGACCTGAACTTGTCCATCTCTAGCTTCCTAAGCAAAGCTAAGGACAGCGGCTCAGTGTCTCTGCAG cttaagaaccagtgtggcacatggctatgcctgctttgctttgctttcagCCAATACCTGCAAACAAGCGTGGCTCCTCTGACCTCATCATTGCCAGCACTAAGGAAGAAAAACTTTCACAAAAAGCGTGCATTTTGGAATCAGTATCAAAAAGAGCTGAACAGGGCACTTCAGAGGATAAATTCAGCAATGAGATTCTTAACAAGAAACCTACCACTGATGGTCCTAAGAAGGCAGTGGATGAGCATGCTAGTGATGTGAACTTAGAAACTGGAGCTGAATCAAATGACCAAACTATCGGAATCCATGAAAATGGTAGAGAAAAGAAACGACCGAAACTGGAAATCCTACCAGATTCCCGAG------AGACTGTTGAGGTAAATTCAGTCAGTGAAGGAA---AGAATAATAGGGTAATTTTGGAAACAAACACCGATTGTCTTAAACCAGAGGAAGACAGAAACAAAAAAAACCAAGAGAAACTAGAGGGTCAGCTTATAAAATCTCAGGAAATCAATGACTCACACATTCAAACAATGGACTTGGTTTCTCAAGAGACTGGGGAAAAAGA---AGACTTTCAGGCAATTGACAATGAGGTTGGACTTGCTAAAGAAGAAACAC------AGCTAGGGAAAGATG---CAGCACAAAAGGTTACAACCAGTGATAGAAGCAGTGAAGTGGGGACAGACAAGGCCCTAGATGACACTCAAAAAGCTGCTGAGCTAAGTAAGGCAACACAAAGTGGAGAAGGAGATGAGACACTGGCACCCACTCAGTCATTAGCAGAAAAGCCAACAGAAGGACCAGACACTGGTGGGGCAGATGAAGAGCCACCTGGTGGAGAGAGGATTGAGGACAGACAACCAGAACAGAAGCCTACAGTATGTAAAGCTGAGGGTCAGTTAACTACCA---------------GGGCAACCTTGAAGCAACCAGACACACATGAAGTTGGACAGGTGAGTGAGTCCAATAGCATCGAAGAGCTAGAGAGGCTCGTAGTCACAGGTGCTGAGGCCCGTGTTCTTGATAGTAAAGGAGAGGCGGCCGCAACTGAAGTGGATTTAGAAAGAAAAGAAAATAAACGAAAAGTACCAGTTAAAGCAGAGTCTCAAGCACCCGCTGCCTTACAGCCTAGTGAGCCTCACCCTGTGTTGATACCTAGTATTAATATAAATGTCAATTCTGAGACCAACCAAGAAGAAATGGGGGCCTTACCAAAGCCTGACACAATATTACCTCCAGAGCCTGAACAAGAAAAGGGAAATGATCCTGAGTCAGGGACTACTGGGTCCACTGTAGAGAACAGCAGTGGTG------ACTTGCCTATCTCCAGCTTCCTAAGTAAAGCTAAGCATAGTGGCTTAGTCTCTCTACAGgtacgttgcttagtcgtggtttttcctaaatcatcctgtccattatttca Alignment from Pairagon CCAATACCTGCAAATAAACGTGCCTCCTCTGACCTCAGCATTGCCAGCTCTGAAGAAGATAAACTTTCACAAAATGCTTGTATTTTGGAATCTGTGTCAGAAAGAACAGAACAAAGTACTTCTGAGGATAAATTTAGCAACAAAATTCTTAATGAGAAACCTACGACTGACGGTCCTGAGAAGGCTGTGGATGAGCATGCAAGTGATGTGAACTTAGAAACTGGGGCTGAACTAAATGACCAAACAGTAGGAATCCATGAGAATGGGAGAGAGAAGAAAAGACCCAAGCTGGAAAATCTGCCAGATACACAAGACCAGCAAACTGTGGATGTTAATTCAGTCAGTGAAGAAAATGAGAATAATAGAGTAACTTTAGAAACGAACACTGATTGTCTGAAACCAGAGGAAGACAGAAATAAAGAAAACCAAGAGACACTTGAGAGTAAACTTATACAATCTGAAGAAATTAATGACACACATATTCAAACAATGGACTTAGTTTCTCAAGAGACTGGAGAAAAAGAAGCAGATTTTCAGGCAGTTGACAATGAAGTTGGGCTTACAAAGGAAGAAACCCAAGAGAAATTAGGAAAAGATGGTACAGCTCAAAAAGTTATAACCAGTGATAGAAGCAGTGAGGTGGGGACAGACGAGGCTCTAGATGACACTCAGAAGGCTGCTGAGCTCAGTAAGGCAGCACAGAGTGGGGAAGGGGACGAAGCCCTGGCGCCTACCCAGACACTAGCAGAGAAGCCCACAGAGGGCCCTGAGGCCGGTGGGGCTGAGGAAGAGCCTCCTGGTGGAGAGAGAGTTGAGGATAAACAGCCAGAGCAGCAGCCTGCAGTGTGTGAAGCTGAGGGACAGTTAACCAGCACGTCAGAGACCACACGGGCAACCCTGGAGCAACCGGAGACGGATGAAGTTGAGCAGGTCAGCGAGTCCAATAGCATTGAGGAGCTAGAGAGACTTGTAGTTACTGGTGCTGAGGCACGGGCTCTCGGGAGTGAAGGTGAGGCAGCTGCTACTGAGGTAGATTTGGAGAGAAAAGAAAACGCACAGAAAGTGCCCGTTAAAGCAGAGTCCCAAGCTCCTGCAGCATCGCAGCCCAGCGAGCCTCACCCTGTCTTAATACCCAGTATTAATA------TTAATTCTGAAACCACAGAAAATAAAGAAGAAATGGGTGCTTTGCCAAAACCTGAAACCATACTGCCACCAGAGCCTGAACATGAAAAGGGAAATGACACCGACTCAGGG---ACTGGGTCCACTGTGGAGAATAGCAGTGGTGACCTGAACTTGTCCATCTCTAGCTTCCTAAGCAAAGCTAAGGACAGCGGCTCAGTGTCTCTGCAG cttaagaaccagtgtggcacatggctatgcctgctttgctttgctttcagCCAATACCTGCAAACAAGCGTGGCTCCTCTGACCTCATCATTGCCAGCACTAAGGAAGAAAAACTTTCACAAAAAGCGTGCATTTTGGAATCAGTATCAAAAAGAGCTGAACAGGGCACTTCAGAGGATAAATTCAGCAATGAGATTCTTAACAAGAAACCTACCACTGATGGTCCTAAGAAGGCAGTGGATGAGCATGCTAGTGATGTGAACTTAGAAACTGGAGCTGAATCAAATGACCAAACTATCGGAATCCATGAAAATGGTAGAGAAAAGAAACGACCGAAACTGGAAATCCTACCAGATTCCCGAG------AGACTGTTGAGGTAAATTCAGTCAGTGAAGGAA---AGAATAATAGGGTAATTTTGGAAACAAACACCGATTGTCTTAAACCAGAGGAAGACAGAAACAAAAAAAACCAAGAGAAACTAGAGGGTCAGCTTATAAAATCTCAGGAAATCAATGACTCACACATTCAAACAATGGACTTGGTTTCTCAAGAGACTGGGGAAAAAGA---AGACTTTCAGGCAATTGACAATGAGGTTGGACTTGCTAAAGAAGAAACAC------AGCTAGGGAAAGATG---CAGCACAAAAGGTTACAACCAGTGATAGAAGCAGTGAAGTGGGGACAGACAAGGCCCTAGATGACACTCAAAAAGCTGCTGAGCTAAGTAAGGCAACACAAAGTGGAGAAGGAGATGAGACACTGGCACCCACTCAGTCATTAGCAGAAAAGCCAACAGAAGGACCAGACACTGGTGGGGCAGATGAAGAGCCACCTGGTGGAGAGAGGATTGAGGACAGACAACCAGAACAGAAGCCTACAGTATGTAAAGCTGAGGGTCAGTTAACTACCA---------------GGGCAACCTTGAAGCAACCAGACACACATGAAGTTGGACAGGTGAGTGAGTCCAATAGCATCGAAGAGCTAGAGAGGCTCGTAGTCACAGGTGCTGAGGCCCGTGTTCTTGATAGTAAAGGAGAGGCGGCCGCAACTGAAGTGGATTTAGAAAGAAAAGAAAATAAACGAAAAGTACCAGTTAAAGCAGAGTCTCAAGCACCCGCTGCCTTACAGCCTAGTGAGCCTCACCCTGTGTTGATACCTAGTATTAATATAAATGTCAATTCTGAGACC------AACCAAGAAGAAATGGGGGCCTTACCAAAGCCTGACACAATATTACCTCCAGAGCCTGAACAAGAAAAGGGAAATGATCCTGAGTCAGGGACTACTGGGTCCACTGTAGAGAACAGCAGTGGTG------ACTTGCCTATCTCCAGCTTCCTAAGTAAAGCTAAGCATAGTGGCTTAGTCTCTCTACAGgtacgttgcttagtcgtggtttttcctaaatcatcctgtccattatttca Alignment from Exonerate_protein2genome CCAATACCTGCAAATAAACGTGCCTCCTCTGACCTCAGCATTGCCAGCTCTGAAGAAGATAAACTTTCACAAAATGCTTGTATTTTGGAATCTGTGTCAGAAAGAACAGAACAAAGTACTTCTGAGGATAAATTTAGCAACAAAATTCTTAATGAGAAACCTACGACTGACGGTCCTGAGAAGGCTGTGGATGAGCATGCAAGTGATGTGAACTTAGAAACTGGGGCTGAACTAAATGACCAAACAGTAGGAATCCATGAGAATGGGAGAGAGAAGAAAAGACCCAAGCTGGAAAATCTGCCAGATACACAAGACCAGCAAACTGTGGATGTTAATTCAGTCAGTGAAGAAAATGAGAATAATAGAGTAACTTTAGAAACGAACACTGATTGTCTGAAACCAGAGGAAGACAGAAATAAAGAAAACCAAGAGACACTTGAGAGTAAACTTATACAATCTGAAGAAATTAATGACACACATATTCAAACAATGGACTTAGTTTCTCAAGAGACTGGAGAAAAAGAAGCAGATTTTCAGGCAGTTGACAATGAAGTTGGGCTTACAAAGGAAGAAACCCAAGAGAAATTAGGAAAAGATGGTACAGCTCAAAAAGTTATAACCAGTGATAGAAGCAGTGAGGTGGGGACAGACGAGGCTCTAGATGACACTCAGAAGGCTGCTGAGCTCAGTAAGGCAGCACAGAGTGGGGAAGGGGACGAAGCCCTGGCGCCTACCCAGACACTAGCAGAGAAGCCCACAGAGGGCCCTGAGGCCGGTGGGGCTGAGGAAGAGCCTCCTGGTGGAGAGAGAGTTGAGGATAAACAGCCAGAGCAGCAGCCTGCAGTGTGTGAAGCTGAGGGACAGTTAACCAGCACGTCAGAGACCACACGGGCAACCCTGGAGCAACCGGAGACGGATGAAGTTGAGCAGGTCAGCGAGTCCAATAGCATTGAGGAGCTAGAGAGACTTGTAGTTACTGGTGCTGAGGCACGGGCTCTCGGGAGTGAAGGTGAGGCAGCTGCTACTGAGGTAGATTTGGAGAGAAAAGAAAACGCACAGAAAGTGCCCGTTAAAGCAGAGTCCCAAGCTCCTGCAGCATCGCAGCCCAGCGAGCCTCACCCTGTCTTAATACCCAGTATTAATATTAATTCTGAAACCACAGAAAATAAAGAAGAAATGGGTGCTTTGCCAAAACCTGAAACCATACTGCCACCAGAGCCTGAACATGAAAAGGGAAATGACACCGACTCAGGG---ACTGGGTCCACTGTGGAGAATAGCAGTGGTGACCTGAACTTGTCCATCTCTAGCTTCCTAAGCAAAGCTAAGGACAGCGGCTCAGTGTCTCTGCAG cttaagaaccagtgtggcacatggctatgcctgctttgctttgctttcagCCAATACCTGCAAACAAGCGTGGCTCCTCTGACCTCATCATTGCCAGCACTAAGGAAGAAAAACTTTCACAAAAAGCGTGCATTTTGGAATCAGTATCAAAAAGAGCTGAACAGGGCACTTCAGAGGATAAATTCAGCAATGAGATTCTTAACAAGAAACCTACCACTGATGGTCCTAAGAAGGCAGTGGATGAGCATGCTAGTGATGTGAACTTAGAAACTGGAGCTGAATCAAATGACCAAACTATCGGAATCCATGAAAATGGTAGAGAAAAGAAACGACCGAAACTGGAAATCCTACCAGATTCC------CGAGAGACTGTTGAGGTAAATTCAGTCAGT---GAAGGAAAGAATAATAGGGTAATTTTGGAAACAAACACCGATTGTCTTAAACCAGAGGAAGACAGAAACAAAAAAAACCAAGAGAAACTAGAGGGTCAGCTTATAAAATCTCAGGAAATCAATGACTCACACATTCAAACAATGGACTTGGTTTCTCAAGAGACTGGGGAAAAAGAA---GACTTTCAGGCAATTGACAATGAGGTTGGACTTGCTAAAGAAGAAACACAG------CTAGGGAAAGAT---GCAGCACAAAAGGTTACAACCAGTGATAGAAGCAGTGAAGTGGGGACAGACAAGGCCCTAGATGACACTCAAAAAGCTGCTGAGCTAAGTAAGGCAACACAAAGTGGAGAAGGAGATGAGACACTGGCACCCACTCAGTCATTAGCAGAAAAGCCAACAGAAGGACCAGACACTGGTGGGGCAGATGAAGAGCCACCTGGTGGAGAGAGGATTGAGGACAGACAACCAGAACAGAAGCCTACAGTATGTAAAGCTGAGGGTCAGTTA---------------ACTACCAGGGCAACCTTGAAGCAACCAGACACACATGAAGTTGGACAGGTGAGTGAGTCCAATAGCATCGAAGAGCTAGAGAGGCTCGTAGTCACAGGTGCTGAGGCCCGTGTTCTTGATAGTAAAGGAGAGGCGGCCGCAACTGAAGTGGATTTAGAAAGAAAAGAAAATAAACGAAAAGTACCAGTTAAAGCAGAGTCTCAAGCACCCGCTGCCTTACAGCCTAGTGAGCCTCACCCTGTGTTGATACCTAGTATTAATATAAATGTCAATTCTGAGACCAACCAAGAAGAAATGGGGGCCTTACCAAAGCCTGACACAATATTACCTCCAGAGCCTGAACAAGAAAAGGGAAATGATCCTGAGTCAGGGACTACTGGGTCCACTGTAGAGAACAGCAGTGGTGAC------TTGCCTATCTCCAGCTTCCTAAGTAAAGCTAAGCATAGTGGCTTAGTCTCTCTACAGgtacgttgcttagtcgtggtttttcctaaatcatcctgtccattatttca Alignment from Exonerate_coding2genome CCAATACCTGCAAATAAACGTGCCTCCTCTGACCTCAGCATTGCCAGCTCTGAAGAAGATAAACTTTCACAAAATGCTTGTATTTTGGAATCTGTGTCAGAAAGAACAGAACAAAGTACTTCTGAGGATAAATTTAGCAACAAAATTCTTAATGAGAAACCTACGACTGACGGTCCTGAGAAGGCTGTGGATGAGCATGCAAGTGATGTGAACTTAGAAACTGGGGCTGAACTAAATGACCAAACAGTAGGAATCCATGAGAATGGGAGAGAGAAGAAAAGACCCAAGCTGGAAAATCTGCCAGATACACAAGACCAGCAAACTGTGGATGTTAATTCAGTCAGTGAAGAAAATGAGAATAATAGAGTAACTTTAGAAACGAACACTGATTGTCTGAAACCAGAGGAAGACAGAAATAAAGAAAACCAAGAGACACTTGAGAGTAAACTTATACAATCTGAAGAAATTAATGACACACATATTCAAACAATGGACTTAGTTTCTCAAGAGACTGGAGAAAAAGAAGCAGATTTTCAGGCAGTTGACAATGAAGTTGGGCTTACAAAGGAAGAAACCCAAGAGAAATTAGGAAAAGATGGTACAGCTCAAAAAGTTATAACCAGTGATAGAAGCAGTGAGGTGGGGACAGACGAGGCTCTAGATGACACTCAGAAGGCTGCTGAGCTCAGTAAGGCAGCACAGAGTGGGGAAGGGGACGAAGCCCTGGCGCCTACCCAGACACTAGCAGAGAAGCCCACAGAGGGCCCTGAGGCCGGTGGGGCTGAGGAAGAGCCTCCTGGTGGAGAGAGAGTTGAGGATAAACAGCCAGAGCAGCAGCCTGCAGTGTGTGAAGCTGAGGGACAGTTAACCAGCACGTCAGAGACCACACGGGCAACCCTGGAGCAACCGGAGACGGATGAAGTTGAGCAGGTCAGCGAGTCCAATAGCATTGAGGAGCTAGAGAGACTTGTAGTTACTGGTGCTGAGGCACGGGCTCTCGGGAGTGAAGGTGAGGCAGCTGCTACTGAGGTAGATTTGGAGAGAAAAGAAAACGCACAGAAAGTGCCCGTTAAAGCAGAGTCCCAAGCTCCTGCAGCATCGCAGCCCAGCGAGCCTCACCCTGTCTTAATACCCAGTATTAATATTAATTCTGAAACCACAGAAAATAAAGAAGAAATGGGTGCTTTGCCAAAACCTGAAACCATACTGCCACCAGAGCCTGAACATGAAAAGGGAAATGACACCGACTCAGGG---ACTGGGTCCACTGTGGAGAATAGCAGTGGTGACCTGAACTTGTCCATCTCTAGCTTCCTAAGCAAAGCTAAGGACAGCGGCTCAGTGTCTCTGCAG cttaagaaccagtgtggcacatggctatgcctgctttgctttgctttcagCCAATACCTGCAAACAAGCGTGGCTCCTCTGACCTCATCATTGCCAGCACTAAGGAAGAAAAACTTTCACAAAAAGCGTGCATTTTGGAATCAGTATCAAAAAGAGCTGAACAGGGCACTTCAGAGGATAAATTCAGCAATGAGATTCTTAACAAGAAACCTACCACTGATGGTCCTAAGAAGGCAGTGGATGAGCATGCTAGTGATGTGAACTTAGAAACTGGAGCTGAATCAAATGACCAAACTATCGGAATCCATGAAAATGGTAGAGAAAAGAAACGACCGAAACTGGAAATCCTACCAGATTCC------CGAGAGACTGTTGAGGTAAATTCAGTCAGT---GAAGGAAAGAATAATAGGGTAATTTTGGAAACAAACACCGATTGTCTTAAACCAGAGGAAGACAGAAACAAAAAAAACCAAGAGAAACTAGAGGGTCAGCTTATAAAATCTCAGGAAATCAATGACTCACACATTCAAACAATGGACTTGGTTTCTCAAGAGACTGGGGAAAAAGAA---GACTTTCAGGCAATTGACAATGAGGTTGGACTTGCTAAAGAAGAAACACAG------CTAGGGAAAGAT---GCAGCACAAAAGGTTACAACCAGTGATAGAAGCAGTGAAGTGGGGACAGACAAGGCCCTAGATGACACTCAAAAAGCTGCTGAGCTAAGTAAGGCAACACAAAGTGGAGAAGGAGATGAGACACTGGCACCCACTCAGTCATTAGCAGAAAAGCCAACAGAAGGACCAGACACTGGTGGGGCAGATGAAGAGCCACCTGGTGGAGAGAGGATTGAGGACAGACAACCAGAACAGAAGCCTACAGTATGTAAAGCTGAGGGTCAGTTA---------------ACTACCAGGGCAACCTTGAAGCAACCAGACACACATGAAGTTGGACAGGTGAGTGAGTCCAATAGCATCGAAGAGCTAGAGAGGCTCGTAGTCACAGGTGCTGAGGCCCGTGTTCTTGATAGTAAAGGAGAGGCGGCCGCAACTGAAGTGGATTTAGAAAGAAAAGAAAATAAACGAAAAGTACCAGTTAAAGCAGAGTCTCAAGCACCCGCTGCCTTACAGCCTAGTGAGCCTCACCCTGTGTTGATACCTAGTATTAATATAAATGTCAATTCTGAGACCAACCAAGAAGAAATGGGGGCCTTACCAAAGCCTGACACAATATTACCTCCAGAGCCTGAACAAGAAAAGGGAAATGATCCTGAGTCAGGGACTACTGGGTCCACTGTAGAGAACAGCAGTGGTGAC------TTGCCTATCTCCAGCTTCCTAAGTAAAGCTAAGCATAGTGGCTTAGTCTCTCTACAGgtacgttgcttagtcgtggtttttcctaaatcatcctgtccattatttca Alignment from GeneWise CCAATACCTGCAAATAAACGTGCCTCCTCTGACCTCAGCATTGCCAGCTCTGAAGAAGATAAACTTTCACAAAATGCTTGTATTTTGGAATCTGTGTCAGAAAGAACAGAACAAAGTACTTCTGAGGATAAATTTAGCAACAAAATTCTTAATGAGAAACCTACGACTGACGGTCCTGAGAAGGCTGTGGATGAGCATGCAAGTGATGTGAACTTAGAAACTGGGGCTGAACTAAATGACCAAACAGTAGGAATCCATGAGAATGGGAGAGAGAAGAAAAGACCCAAGCTGGAAAATCTGCCAGATACACAAGACCAGCAAACTGTGGATGTTAATTCAGTCAGTGAAGAAAATGAGAATAATAGAGTAACTTTAGAAACGAACACTGATTGTCTGAAACCAGAGGAAGACAGAAATAAAGAAAACCAAGAGACACTTGAGAGTAAACTTATACAATCTGAAGAAATTAATGACACACATATTCAAACAATGGACTTAGTTTCTCAAGAGACTGGAGAAAAAGAAGCAGATTTTCAGGCAGTTGACAATGAAGTTGGGCTTACAAAGGAAGAAACCCAAGAGAAATTAGGAAAAGATGGTACAGCTCAAAAAGTTATAACCAGTGATAGAAGCAGTGAGGTGGGGACAGACGAGGCTCTAGATGACACTCAGAAGGCTGCTGAGCTCAGTAAGGCAGCACAGAGTGGGGAAGGGGACGAAGCCCTGGCGCCTACCCAGACACTAGCAGAGAAGCCCACAGAGGGCCCTGAGGCCGGTGGGGCTGAGGAAGAGCCTCCTGGTGGAGAGAGAGTTGAGGATAAACAGCCAGAGCAGCAGCCTGCAGTGTGTGAAGCTGAGGGACAGTTAACCAGCACGTCAGAGACCACACGGGCAACCCTGGAGCAACCGGAGACGGATGAAGTTGAGCAGGTCAGCGAGTCCAATAGCATTGAGGAGCTAGAGAGACTTGTAGTTACTGGTGCTGAGGCACGGGCTCTCGGGAGTGAAGGTGAGGCAGCTGCTACTGAGGTAGATTTGGAGAGAAAAGAAAACGCACAGAAAGTGCCCGTTAAAGCAGAGTCCCAAGCTCCTGCAGCATCGCAGCCCAGCGAGCCTCACCCTGTCTTAATACCCAGTATTAATATTAATTCTGAAACCACAGAAAATAAAGAAGAAATGGGTGCTTTGCCAAAACCTGAAACCATACTGCCACCAGAGCCTGAACATGAAAAGGGAAATGACACCGACTCAGGGACT---GGGTCCACTGTGGAGAATAGCAGTGGTGACCTGAACTTGTCCATCTCTAGCTTCCTAAGCAAAGCTAAGGACAGCGGCTCAGTGTCTCTGCAG cttaagaaccagtgtggcacatggctatgcctgctttgctttgctttcagCCAATACCTGCAAACAAGCGTGGCTCCTCTGACCTCATCATTGCCAGCACTAAGGAAGAAAAACTTTCACAAAAAGCGTGCATTTTGGAATCAGTATCAAAAAGAGCTGAACAGGGCACTTCAGAGGATAAATTCAGCAATGAGATTCTTAACAAGAAACCTACCACTGATGGTCCTAAGAAGGCAGTGGATGAGCATGCTAGTGATGTGAACTTAGAAACTGGAGCTGAATCAAATGACCAAACTATCGGAATCCATGAAAATGGTAGAGAAAAGAAACGACCGAAACTGGAAATCCTACCAGATTCC------CGAGAGACTGTTGAGGTAAATTCAGTCAGTGAA---GGAAAGAATAATAGGGTAATTTTGGAAACAAACACCGATTGTCTTAAACCAGAGGAAGACAGAAACAAAAAAAACCAAGAGAAACTAGAGGGTCAGCTTATAAAATCTCAGGAAATCAATGACTCACACATTCAAACAATGGACTTGGTTTCTCAAGAGACTGGGGAAAAAGAA---GACTTTCAGGCAATTGACAATGAGGTTGGACTTGCTAAAGAAGAAACACAG------CTAGGGAAAGAT---GCAGCACAAAAGGTTACAACCAGTGATAGAAGCAGTGAAGTGGGGACAGACAAGGCCCTAGATGACACTCAAAAAGCTGCTGAGCTAAGTAAGGCAACACAAAGTGGAGAAGGAGATGAGACACTGGCACCCACTCAGTCATTAGCAGAAAAGCCAACAGAAGGACCAGACACTGGTGGGGCAGATGAAGAGCCACCTGGTGGAGAGAGGATTGAGGACAGACAACCAGAACAGAAGCCTACAGTATGTAAAGCTGAGGGTCAGTTAACT---------------ACCAGGGCAACCTTGAAGCAACCAGACACACATGAAGTTGGACAGGTGAGTGAGTCCAATAGCATCGAAGAGCTAGAGAGGCTCGTAGTCACAGGTGCTGAGGCCCGTGTTCTTGATAGTAAAGGAGAGGCGGCCGCAACTGAAGTGGATTTAGAAAGAAAAGAAAATAAACGAAAAGTACCAGTTAAAGCAGAGTCTCAAGCACCCGCTGCCTTACAGCCTAGTGAGCCTCACCCTGTGTTGATACCTAGTATTAATATAAATGTCAATTCTGAGACCAACCAAGAAGAAATGGGGGCCTTACCAAAGCCTGACACAATATTACCTCCAGAGCCTGAACAAGAAAAGGGAAATGATCCTGAGTCAGGGACTACTGGGTCCACTGTAGAGAACAGCAGTGGTGACTTG------CCTATCTCCAGCTTCCTAAGTAAAGCTAAGCATAGTGGCTTAGTCTCTCTACAGgtacgttgcttagtcgtggtttttcctaaatcatcctgtccattatttca #### Slk_ID10262_14 --> 0 - 1 Original Alignment GAACAAGAATTTGTTCAGAAGCAACAACAAGAGTTAGATGGTTCTCTGAAAAAGATTATCCAGCAGCAGAAGGCAGAGTTGGCCAATATTGAGAGAGAATGCCTGAATAACAAGCAGCAGCTCATGAGAg taggtaatgatctacatattatgtaccactcattgttatctcccaaacagGAACAAGAGTTTGTTCAGAAACAACAGCAAGAGTTGGATGGTTCTCTTAGAAAGATTATCCAGCAACAGAAGGCAGAGTTGTCCAATGTTGAAAGAGAATGCCTCAACAATAAGCAGCAGCTTATGAGAggtatttggcacttgacagcatgacaccacttgacccaccaagtcttggat Alignment from CESAR GAACAAGAATTTGTTCAGAAGCAACAACAAGAGTTAGATGGTTCTCTGAAAAAGATTATCCAGCAGCAGAAGGCAGAGTTGGCCAATATTGAGAGAGAATGCCTGAATAACAAGCAGCAGCTCATGAGAg taggtaatgatctacatattatgtaccactcattgttatctcccaaacagGAACAAGAGTTTGTTCAGAAACAACAGCAAGAGTTGGATGGTTCTCTTAGAAAGATTATCCAGCAACAGAAGGCAGAGTTGTCCAATGTTGAAAGAGAATGCCTCAACAATAAGCAGCAGCTTATGAGAggtatttggcacttgacagcatgacaccacttgacccaccaagtcttggat Alignment from Spaln_aa2Genome GAACAAGAATTTGTTCAGAAGCAACAACAAGAGTTAGATGGTTCTCTGAAAAAGATTATCCAGCAGCAGAAGGCAGAGTTGGCCAATATTGAGAGAGAATGCCTGAATAACAAGCAGCAGCTCATGAGAG taggtaatgatctacatattatgtaccactcattgttatctcccaaacagGAACAAGAGTTTGTTCAGAAACAACAGCAAGAGTTGGATGGTTCTCTTAGAAAGATTATCCAGCAACAGAAGGCAGAGTTGTCCAATGTTGAAAGAGAATGCCTCAACAATAAGCAGCAGCTTATGAGAGgtatttggcacttgacagcatgacaccacttgacccaccaagtcttggat Alignment from Spaln_nt2Genome GAACAAGAATTTGTTCAGAAGCAACAACAAGAGTTAGATGGTTCTCTGAAAAAGATTATCCAGCAGCAGAAGGCAGAGTTGGCCAATATTGAGAGAGAATGCCTGAATAACAAGCAGCAGCTCATGAGAG taggtaatgatctacatattatgtaccactcattgttatctcccaaacagGAACAAGAGTTTGTTCAGAAACAACAGCAAGAGTTGGATGGTTCTCTTAGAAAGATTATCCAGCAACAGAAGGCAGAGTTGTCCAATGTTGAAAGAGAATGCCTCAACAATAAGCAGCAGCTTATGAGAGgtatttggcacttgacagcatgacaccacttgacccaccaagtcttggat Alignment from Pairagon GAACAAGAATTTGTTCAGAAGCAACAACAAGAGTTAGATGGTTCTCTGAAAAAGATTATCCAGCAGCAGAAGGCAGAGTTGGCCAATATTGAGAGAGAATGCCTGAATAACAAGCAGCAGCTCATGAGAG taggtaatgatctacatattatgtaccactcattgttatctcccaaacagGAACAAGAGTTTGTTCAGAAACAACAGCAAGAGTTGGATGGTTCTCTTAGAAAGATTATCCAGCAACAGAAGGCAGAGTTGTCCAATGTTGAAAGAGAATGCCTCAACAATAAGCAGCAGCTTATGAGAGgtatttggcacttgacagcatgacaccacttgacccaccaagtcttggat Alignment from Exonerate_protein2genome GAACAAGAATTTGTTCAGAAGCAACAACAAGAGTTAGATGGTTCTCTGAAAAAGATTATCCAGCAGCAGAAGGCAGAGTTGGCCAATATTGAGAGAGAATGCCTGAATAACAAGCAGCAGCTCATGAGAG taggtaatgatctacatattatgtaccactcattgttatctcccaaacagGAACAAGAGTTTGTTCAGAAACAACAGCAAGAGTTGGATGGTTCTCTTAGAAAGATTATCCAGCAACAGAAGGCAGAGTTGTCCAATGTTGAAAGAGAATGCCTCAACAATAAGCAGCAGCTTATGAGAGgtatttggcacttgacagcatgacaccacttgacccaccaagtcttggat Alignment from Exonerate_coding2genome GAACAAGAATTTGTTCAGAAGCAACAACAAGAGTTAGATGGTTCTCTGAAAAAGATTATCCAGCAGCAGAAGGCAGAGTTGGCCAATATTGAGAGAGAATGCCTGAATAACAAGCAGCAGCTCATGAGAG taggtaatgatctacatattatgtaccactcattgttatctcccaaacagGAACAAGAGTTTGTTCAGAAACAACAGCAAGAGTTGGATGGTTCTCTTAGAAAGATTATCCAGCAACAGAAGGCAGAGTTGTCCAATGTTGAAAGAGAATGCCTCAACAATAAGCAGCAGCTTATGAGAGgtatttggcacttgacagcatgacaccacttgacccaccaagtcttggat Alignment from GeneWise GAACAAGAATTTGTTCAGAAGCAACAACAAGAGTTAGATGGTTCTCTGAAAAAGATTATCCAGCAGCAGAAGGCAGAGTTGGCCAATATTGAGAGAGAATGCCTGAATAACAAGCAGCAGCTCATGAGAG taggtaatgatctacatattatgtaccactcattgttatctcccaaacagGAACAAGAGTTTGTTCAGAAACAACAGCAAGAGTTGGATGGTTCTCTTAGAAAGATTATCCAGCAACAGAAGGCAGAGTTGTCCAATGTTGAAAGAGAATGCCTCAACAATAAGCAGCAGCTTATGAGAGgtatttggcacttgacagcatgacaccacttgacccaccaagtcttggat #### Slk_ID10264_16 --> 0 - 0 Original Alignment GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG catctatgggcatgaaattagttctgagtggtactaactctgcttgtcagGAAACAGAGCAAATGCAACGTTACAATCAACGACTCATTGAAGAGTTGAAAAATAGAGAGACTCAGGAAAGAGCACGACTGGCCAAAATTCAAAGGAGTGAATCAAAAACAAGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACGCCTGATCAGGATCATGAAAAAATAAAACAAgtaagtgacagttcaatttctttacctcaatttaagatgtatgttgaaac Alignment from CESAR GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG catctatgggcatgaaattagttctgagtggtactaactctgcttgtcagGAAACAGAGCAAATGCAACGTTACAATCAACGACTCATTGAAGAGTTGAAAAATAGAGAGACTCAGGAAAGAGCACGACTGGCCAAAATTCAAAGGAGTGAATCAAAAACAAGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACGCCTGATCAGGATCATGAAAAAATAAAACAAgtaagtgacagttcaatttctttacctcaatttaagatgtatgttgaaac Alignment from Spaln_aa2Genome GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG catctatgggcatgaaattagttctgagtggtactaactctgcttgtcagGAAACAGAGCAAATGCAACGTTACAATCAACGACTCATTGAAGAGTTGAAAAATAGAGAGACTCAGGAAAGAGCACGACTGGCCAAAATTCAAAGGAGTGAATCAAAAACAAGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACGCCTGATCAGGATCATGAAAAAATAAAACAAgtaagtgacagttcaatttctttacctcaatttaagatgtatgttgaaac Alignment from Spaln_nt2Genome GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG catctatgggcatgaaattagttctgagtggtactaactctgcttgtcagGAAACAGAGCAAATGCAACGTTACAATCAACGACTCATTGAAGAGTTGAAAAATAGAGAGACTCAGGAAAGAGCACGACTGGCCAAAATTCAAAGGAGTGAATCAAAAACAAGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACGCCTGATCAGGATCATGAAAAAATAAAACAAgtaagtgacagttcaatttctttacctcaatttaagatgtatgttgaaac Alignment from Pairagon GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG catctatgggcatgaaattagttctgagtggtactaactctgcttgtcagGAAACAGAGCAAATGCAACGTTACAATCAACGACTCATTGAAGAGTTGAAAAATAGAGAGACTCAGGAAAGAGCACGACTGGCCAAAATTCAAAGGAGTGAATCAAAAACAAGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACGCCTGATCAGGATCATGAAAAAATAAAACAAgtaagtgacagttcaatttctttacctcaatttaagatgtatgttgaaac Alignment from Exonerate_protein2genome GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG catctatgggcatgaaattagttctgagtggtactaactctgcttgtcagGAAACAGAGCAAATGCAACGTTACAATCAACGACTCATTGAAGAGTTGAAAAATAGAGAGACTCAGGAAAGAGCACGACTGGCCAAAATTCAAAGGAGTGAATCAAAAACAAGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACGCCTGATCAGGATCATGAAAAAATAAAACAAgtaagtgacagttcaatttctttacctcaatttaagatgtatgttgaaac Alignment from Exonerate_coding2genome GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG catctatgggcatgaaattagttctgagtggtactaactctgcttgtcagGAAACAGAGCAAATGCAACGTTACAATCAACGACTCATTGAAGAGTTGAAAAATAGAGAGACTCAGGAAAGAGCACGACTGGCCAAAATTCAAAGGAGTGAATCAAAAACAAGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACGCCTGATCAGGATCATGAAAAAATAAAACAAgtaagtgacagttcaatttctttacctcaatttaagatgtatgttgaaac Alignment from GeneWise GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG catctatgggcatgaaattagttctgagtggtactaactctgcttgtcagGAAACAGAGCAAATGCAACGTTACAATCAACGACTCATTGAAGAGTTGAAAAATAGAGAGACTCAGGAAAGAGCACGACTGGCCAAAATTCAAAGGAGTGAATCAAAAACAAGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACGCCTGATCAGGATCATGAAAAAATAAAACAAgtaagtgacagttcaatttctttacctcaatttaagatgtatgttgaaac #### Slk_ID10265_17 --> 0 - 0 Original Alignment TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG tgtagagggacaagatatgtttttctattttcctttgcttcaaaccctagTTTGCTGCACAAGACAAAAAGCGAAAAAAAAATGAAAGGATGGCTCAACATCAAAAGCATGAAAGCCATATGCGGGATCTACAGCTGCAATGTGAAGCTAATGTGCAGGAATTACATCAGTTGCCAgtgtgttttctaaaactggcgtgacaagaagtgcatttgtattgcttgga Alignment from CESAR TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG tgtagagggacaagatatgtttttctattttcctttgcttcaaaccctagTTTGCTGCACAAGACAAAAAGCGAAAAAAAAATGAAAGGATGGCTCAACATCAAAAGCATGAAAGCCATATGCGGGATCTACAGCTGCAATGTGAAGCTAATGTGCAGGAATTACATCAGTTGCCAgtgtgttttctaaaactggcgtgacaagaagtgcatttgtattgcttgga Alignment from Spaln_aa2Genome TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG tgtagagggacaagatatgtttttctattttcctttgcttcaaaccctagTTTGCTGCACAAGACAAAAAGCGAAAAAAAAATGAAAGGATGGCTCAACATCAAAAGCATGAAAGCCATATGCGGGATCTACAGCTGCAATGTGAAGCTAATGTGCAGGAATTACATCAGTTGCCAgtgtgttttctaaaactggcgtgacaagaagtgcatttgtattgcttgga Alignment from Spaln_nt2Genome TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG tgtagagggacaagatatgtttttctattttcctttgcttcaaaccctagTTTGCTGCACAAGACAAAAAGCGAAAAAAAAATGAAAGGATGGCTCAACATCAAAAGCATGAAAGCCATATGCGGGATCTACAGCTGCAATGTGAAGCTAATGTGCAGGAATTACATCAGTTGCCAgtgtgttttctaaaactggcgtgacaagaagtgcatttgtattgcttgga Alignment from Pairagon TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG tgtagagggacaagatatgtttttctattttcctttgcttcaaaccctagTTTGCTGCACAAGACAAAAAGCGAAAAAAAAATGAAAGGATGGCTCAACATCAAAAGCATGAAAGCCATATGCGGGATCTACAGCTGCAATGTGAAGCTAATGTGCAGGAATTACATCAGTTGCCAgtgtgttttctaaaactggcgtgacaagaagtgcatttgtattgcttgga Alignment from Exonerate_protein2genome TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG tgtagagggacaagatatgtttttctattttcctttgcttcaaaccctagTTTGCTGCACAAGACAAAAAGCGAAAAAAAAATGAAAGGATGGCTCAACATCAAAAGCATGAAAGCCATATGCGGGATCTACAGCTGCAATGTGAAGCTAATGTGCAGGAATTACATCAGTTGCCAgtgtgttttctaaaactggcgtgacaagaagtgcatttgtattgcttgga Alignment from Exonerate_coding2genome TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG tgtagagggacaagatatgtttttctattttcctttgcttcaaaccctagTTTGCTGCACAAGACAAAAAGCGAAAAAAAAATGAAAGGATGGCTCAACATCAAAAGCATGAAAGCCATATGCGGGATCTACAGCTGCAATGTGAAGCTAATGTGCAGGAATTACATCAGTTGCCAgtgtgttttctaaaactggcgtgacaagaagtgcatttgtattgcttgga Alignment from GeneWise TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG tgtagagggacaagatatgtttttctattttcctttgcttcaaaccctagTTTGCTGCACAAGACAAAAAGCGAAAAAAAAATGAAAGGATGGCTCAACATCAAAAGCATGAAAGCCATATGCGGGATCTACAGCTGCAATGTGAAGCTAATGTGCAGGAATTACATCAGTTGCCAgtgtgttttctaaaactggcgtgacaagaagtgcatttgtattgcttgga #### Slk_ID10266_18 --> 0 - 0 Original Alignment AATGAAAAATGCCACCTGTTGGTTGAACATGAGACTCAGAAGCTGAAGGAGTTGGATGAGGAGCACAGCCAAGAGCTGAAGGAGTGGAGAGAGAAGCTGAGACCCAGGAAGAAG acaccacatacaaccagtggttgttcaaaattggttattttttctgccagAATGAAAGATGTCACCTGTTGGTCGAACATGAAACACAGAAGCTGAAGGAGTTGGATGAGGAGCACACACAAGAGCTTAAAGAGTGGCGAGAGAAGCTAAGACCCAGAAAGAAGgtaagaatatagttggaaggactgattcattagtcccacagaatgccata Alignment from CESAR AATGAAAAATGCCACCTGTTGGTTGAACATGAGACTCAGAAGCTGAAGGAGTTGGATGAGGAGCACAGCCAAGAGCTGAAGGAGTGGAGAGAGAAGCTGAGACCCAGGAAGAAG acaccacatacaaccagtggttgttcaaaattggttattttttctgccagAATGAAAGATGTCACCTGTTGGTCGAACATGAAACACAGAAGCTGAAGGAGTTGGATGAGGAGCACACACAAGAGCTTAAAGAGTGGCGAGAGAAGCTAAGACCCAGAAAGAAGgtaagaatatagttggaaggactgattcattagtcccacagaatgccata Alignment from Spaln_aa2Genome AATGAAAAATGCCACCTGTTGGTTGAACATGAGACTCAGAAGCTGAAGGAGTTGGATGAGGAGCACAGCCAAGAGCTGAAGGAGTGGAGAGAGAAGCTGAGACCCAGGAAGAAG acaccacatacaaccagtggttgttcaaaattggttattttttctgccagAATGAAAGATGTCACCTGTTGGTCGAACATGAAACACAGAAGCTGAAGGAGTTGGATGAGGAGCACACACAAGAGCTTAAAGAGTGGCGAGAGAAGCTAAGACCCAGAAAGAAGgtaagaatatagttggaaggactgattcattagtcccacagaatgccata Alignment from Spaln_nt2Genome AATGAAAAATGCCACCTGTTGGTTGAACATGAGACTCAGAAGCTGAAGGAGTTGGATGAGGAGCACAGCCAAGAGCTGAAGGAGTGGAGAGAGAAGCTGAGACCCAGGAAGAAG acaccacatacaaccagtggttgttcaaaattggttattttttctgccagAATGAAAGATGTCACCTGTTGGTCGAACATGAAACACAGAAGCTGAAGGAGTTGGATGAGGAGCACACACAAGAGCTTAAAGAGTGGCGAGAGAAGCTAAGACCCAGAAAGAAGgtaagaatatagttggaaggactgattcattagtcccacagaatgccata Alignment from Pairagon AATGAAAAATGCCACCTGTTGGTTGAACATGAGACTCAGAAGCTGAAGGAGTTGGATGAGGAGCACAGCCAAGAGCTGAAGGAGTGGAGAGAGAAGCTGAGACCCAGGAAGAAG acaccacatacaaccagtggttgttcaaaattggttattttttctgccagAATGAAAGATGTCACCTGTTGGTCGAACATGAAACACAGAAGCTGAAGGAGTTGGATGAGGAGCACACACAAGAGCTTAAAGAGTGGCGAGAGAAGCTAAGACCCAGAAAGAAGgtaagaatatagttggaaggactgattcattagtcccacagaatgccata Alignment from Exonerate_protein2genome AATGAAAAATGCCACCTGTTGGTTGAACATGAGACTCAGAAGCTGAAGGAGTTGGATGAGGAGCACAGCCAAGAGCTGAAGGAGTGGAGAGAGAAGCTGAGACCCAGGAAGAAG acaccacatacaaccagtggttgttcaaaattggttattttttctgccagAATGAAAGATGTCACCTGTTGGTCGAACATGAAACACAGAAGCTGAAGGAGTTGGATGAGGAGCACACACAAGAGCTTAAAGAGTGGCGAGAGAAGCTAAGACCCAGAAAGAAGgtaagaatatagttggaaggactgattcattagtcccacagaatgccata Alignment from Exonerate_coding2genome AATGAAAAATGCCACCTGTTGGTTGAACATGAGACTCAGAAGCTGAAGGAGTTGGATGAGGAGCACAGCCAAGAGCTGAAGGAGTGGAGAGAGAAGCTGAGACCCAGGAAGAAG acaccacatacaaccagtggttgttcaaaattggttattttttctgccagAATGAAAGATGTCACCTGTTGGTCGAACATGAAACACAGAAGCTGAAGGAGTTGGATGAGGAGCACACACAAGAGCTTAAAGAGTGGCGAGAGAAGCTAAGACCCAGAAAGAAGgtaagaatatagttggaaggactgattcattagtcccacagaatgccata Alignment from GeneWise AATGAAAAATGCCACCTGTTGGTTGAACATGAGACTCAGAAGCTGAAGGAGTTGGATGAGGAGCACAGCCAAGAGCTGAAGGAGTGGAGAGAGAAGCTGAGACCCAGGAAGAAG acaccacatacaaccagtggttgttcaaaattggttattttttctgccagAATGAAAGATGTCACCTGTTGGTCGAACATGAAACACAGAAGCTGAAGGAGTTGGATGAGGAGCACACACAAGAGCTTAAAGAGTGGCGAGAGAAGCTAAGACCCAGAAAGAAGgtaagaatatagttggaaggactgattcattagtcccacagaatgccata #### Smarca2_ID5724_8 --> 0 - 0 Original Alignment GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG aatattaaagggggtcaggtacaatgctatttgttttcctgaatgcacagGCTGAGGATGAAGAGGGGTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCATACCTCTTGCAACAGACTGATGAGTATGTTGCCAATCTCACAAACCTAGTATGGGAGCACAAACAAGCCCAAGCAGCCAAAGAGAAGAAGAAAAGGAGGAGGAGGAAGAAAgtaaggtttaaaggagaacctgtgtctatgttccacaggttttatgtttg Alignment from CESAR GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG aatattaaagggggtcaggtacaatgctatttgttttcctgaatgcacagGCTGAGGATGAAGAGGGGTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCATACCTCTTGCAACAGACTGATGAGTATGTTGCCAATCTCACAAACCTAGTATGGGAGCACAAACAAGCCCAAGCAGCCAAAGAGAAGAAGAAAAGGAGGAGGAGGAAGAAAgtaaggtttaaaggagaacctgtgtctatgttccacaggttttatgtttg Alignment from Spaln_aa2Genome GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG aatattaaagggggtcaggtacaatgctatttgttttcctgaatgcacagGCTGAGGATGAAGAGGGGTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCATACCTCTTGCAACAGACTGATGAGTATGTTGCCAATCTCACAAACCTAGTATGGGAGCACAAACAAGCCCAAGCAGCCAAAGAGAAGAAGAAAAGGAGGAGGAGGAAGAAAgtaaggtttaaaggagaacctgtgtctatgttccacaggttttatgtttg Alignment from Spaln_nt2Genome GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG aatattaaagggggtcaggtacaatgctatttgttttcctgaatgcacagGCTGAGGATGAAGAGGGGTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCATACCTCTTGCAACAGACTGATGAGTATGTTGCCAATCTCACAAACCTAGTATGGGAGCACAAACAAGCCCAAGCAGCCAAAGAGAAGAAGAAAAGGAGGAGGAGGAAGAAAgtaaggtttaaaggagaacctgtgtctatgttccacaggttttatgtttg Alignment from Pairagon GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG aatattaaagggggtcaggtacaatgctatttgttttcctgaatgcacagGCTGAGGATGAAGAGGGGTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCATACCTCTTGCAACAGACTGATGAGTATGTTGCCAATCTCACAAACCTAGTATGGGAGCACAAACAAGCCCAAGCAGCCAAAGAGAAGAAGAAAAGGAGGAGGAGGAAGAAAgtaaggtttaaaggagaacctgtgtctatgttccacaggttttatgtttg Alignment from Exonerate_protein2genome GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG aatattaaagggggtcaggtacaatgctatttgttttcctgaatgcacagGCTGAGGATGAAGAGGGGTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCATACCTCTTGCAACAGACTGATGAGTATGTTGCCAATCTCACAAACCTAGTATGGGAGCACAAACAAGCCCAAGCAGCCAAAGAGAAGAAGAAAAGGAGGAGGAGGAAGAAAgtaaggtttaaaggagaacctgtgtctatgttccacaggttttatgtttg Alignment from Exonerate_coding2genome GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG aatattaaagggggtcaggtacaatgctatttgttttcctgaatgcacagGCTGAGGATGAAGAGGGGTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCATACCTCTTGCAACAGACTGATGAGTATGTTGCCAATCTCACAAACCTAGTATGGGAGCACAAACAAGCCCAAGCAGCCAAAGAGAAGAAGAAAAGGAGGAGGAGGAAGAAAgtaaggtttaaaggagaacctgtgtctatgttccacaggttttatgtttg Alignment from GeneWise GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG aatattaaagggggtcaggtacaatgctatttgttttcctgaatgcacagGCTGAGGATGAAGAGGGGTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCATACCTCTTGCAACAGACTGATGAGTATGTTGCCAATCTCACAAACCTAGTATGGGAGCACAAACAAGCCCAAGCAGCCAAAGAGAAGAAGAAAAGGAGGAGGAGGAAGAAAgtaaggtttaaaggagaacctgtgtctatgttccacaggttttatgtttg #### Smarca2_ID5727_9 --> 0 - 0 Original Alignment AAGGCTGAAGAGAATGCAGAGGGAGGGGAACCTGCCCTGGGACCAGATGGAGAG acccatggagtctcagtagtcttggtgttgtattttgtattatctgttagAAGGCTGAGGAGAATGCAAGAGGGGGCAAACCTGTGCTAGGATCAGATGGTGAAgtgagtccatgctgttcatgctgttaaacctaaactaacactaacttgac Alignment from CESAR AAGGCTGAAGAGAATGCAGAGGGAGGGGAACCTGCCCTGGGACCAGATGGAGAG acccatggagtctcagtagtcttggtgttgtattttgtattatctgttagAAGGCTGAGGAGAATGCAAGAGGGGGCAAACCTGTGCTAGGATCAGATGGTGAAgtgagtccatgctgttcatgctgttaaacctaaactaacactaacttgac Alignment from Spaln_aa2Genome AAGGCTGAAGAGAATGCAGAGGGAGGGGAACCTGCCCTGGGACCAGATGGAGAG acccatggagtctcagtagtcttggtgttgtattttgtattatctgttagAAGGCTGAGGAGAATGCAAGAGGGGGCAAACCTGTGCTAGGATCAGATGGTGAAgtgagtccatgctgttcatgctgttaaacctaaactaacactaacttgac Alignment from Spaln_nt2Genome AAGGCTGAAGAGAATGCAGAGGGAGGGGAACCTGCCCTGGGACCAGATGGAGAG acccatggagtctcagtagtcttggtgttgtattttgtattatctgttagAAGGCTGAGGAGAATGCAAGAGGGGGCAAACCTGTGCTAGGATCAGATGGTGAAgtgagtccatgctgttcatgctgttaaacctaaactaacactaacttgac Alignment from Pairagon AAGGCTGAAGAGAATGCAGAGGGAGGGGAACCTGCCCTGGGACCAGATGGAGAG acccatggagtctcagtagtcttggtgttgtattttgtattatctgttagAAGGCTGAGGAGAATGCAAGAGGGGGCAAACCTGTGCTAGGATCAGATGGTGAAgtgagtccatgctgttcatgctgttaaacctaaactaacactaacttgac Alignment from Exonerate_protein2genome AAGGCTGAAGAGAATGCAGAGGGAGGGGAACCTGCCCTGGGACCAGATGGAGAG acccatggagtctcagtagtcttggtgttgtattttgtattatctgttagAAGGCTGAGGAGAATGCAAGAGGGGGCAAACCTGTGCTAGGATCAGATGGTGAAgtgagtccatgctgttcatgctgttaaacctaaactaacactaacttgac Alignment from Exonerate_coding2genome AAGGCTGAAGAGAATGCAGAGGGAGGGGAACCTGCCCTGGGACCAGATGGAGAG acccatggagtctcagtagtcttggtgttgtattttgtattatctgttagAAGGCTGAGGAGAATGCAAGAGGGGGCAAACCTGTGCTAGGATCAGATGGTGAAgtgagtccatgctgttcatgctgttaaacctaaactaacactaacttgac Alignment from GeneWise AAGGCTGAAGAGAATGCAGAGGGAGGGGAACCTGCCCTGGGACCAGATGGAGAG acccatggagtctcagtagtcttggtgttgtattttgtattatctgttagAAGGCTGAGGAGAATGCAAGAGGGGGCAAACCTGTGCTAGGATCAGATGGTGAAgtgagtccatgctgttcatgctgttaaacctaaactaacactaacttgac #### Smarca2_ID5740_18 --> 0 - 0 Original Alignment GTGGACCTGAACGAAGAAGAAACGATTTTGATCATCAGGCGTCTACACAAGGTGCTGAGACCCTTTTTACTGAGGAGGCTGAAGAAAGAGGTTGAGTCTCAGCTTCCGGAAAAG agaacacaaagccatgtaactggtgtctacccctttctcccccatttcagGTAGACTTGAATGAGGAAGAAAAAATCTTAATCATCAGGCGTCTACACAATGTACTAAGACCGTTTTTACTGAGAAGG---AAGAAAGAGGTTGAGTCTCAACTCCCAGAAGAGgtaaggaagactatgaaggtaggtgttgctgctgcagcctatattttcgg Alignment from CESAR GTGGACCTGAACGAAGAAGAAACGATTTTGATCATCAGGCGTCTACACAAGGTGCTGAGACCCTTTTTACTGAGGAGGCTGAAGAAAGAGGTTGAGTCTCAGCTTCCGGAAAAG agaacacaaagccatgtaactggtgtctacccctttctcccccatttcagGTAGACTTGAATGAGGAAGAAAAAATCTTAATCATCAGGCGTCTACACAATGTACTAAGACCGTTTTTACTGAGAAGG---AAGAAAGAGGTTGAGTCTCAACTCCCAGAAGAGgtaaggaagactatgaaggtaggtgttgctgctgcagcctatattttcgg Alignment from Spaln_aa2Genome GTGGACCTGAACGAAGAAGAAACGATTTTGATCATCAGGCGTCTACACAAGGTGCTGAGACCCTTTTTACTGAGGAGGCTGAAGAAAGAGGTTGAGTCTCAGCTTCCGGAAAAG agaacacaaagccatgtaactggtgtctacccctttctcccccatttcagGTAGACTTGAATGAGGAAGAAAAAATCTTAATCATCAGGCGTCTACACAATGTACTAAGACCGTTTTTACTGAGAAGGAAGAAA---GAGGTTGAGTCTCAACTCCCAGAAGAGgtaaggaagactatgaaggtaggtgttgctgctgcagcctatattttcgg Alignment from Spaln_nt2Genome GTGGACCTGAACGAAGAAGAAACGATTTTGATCATCAGGCGTCTACACAAGGTGCTGAGACCCTTTTTACTGAGGAGGCTGAAGAAAGAGGTTGAGTCTCAGCTTCCGGAAAAG agaacacaaagccatgtaactggtgtctacccctttctcccccatttcagGTAGACTTGAATGAGGAAGAAAAAATCTTAATCATCAGGCGTCTACACAATGTACTAAGACCGTTTTTACTGAGAAGG---AAGAAAGAGGTTGAGTCTCAACTCCCAGAAGAGgtaaggaagactatgaaggtaggtgttgctgctgcagcctatattttcgg Alignment from Pairagon GTGGACCTGAACGAAGAAGAAACGATTTTGATCATCAGGCGTCTACACAAGGTGCTGAGACCCTTTTTACTGAGGAGGCTGAAGAAAGAGGTTGAGTCTCAGCTTCCGGAAAAG agaacacaaagccatgtaactggtgtctacccctttctcccccatttcagGTAGACTTGAATGAGGAAGAAAAAATCTTAATCATCAGGCGTCTACACAATGTACTAAGACCGTTTTTACTGAGAAG---GAAGAAAGAGGTTGAGTCTCAACTCCCAGAAGAGgtaaggaagactatgaaggtaggtgttgctgctgcagcctatattttcgg Alignment from Exonerate_protein2genome GTGGACCTGAACGAAGAAGAAACGATTTTGATCATCAGGCGTCTACACAAGGTGCTGAGACCCTTTTTACTGAGGAGGCTGAAGAAAGAGGTTGAGTCTCAGCTTCCGGAAAAG agaacacaaagccatgtaactggtgtctacccctttctcccccatttcagGTAGACTTGAATGAGGAAGAAAAAATCTTAATCATCAGGCGTCTACACAATGTACTAAGACCGTTTTTACTGAGAAGG---AAGAAAGAGGTTGAGTCTCAACTCCCAGAAGAGgtaaggaagactatgaaggtaggtgttgctgctgcagcctatattttcgg Alignment from Exonerate_coding2genome GTGGACCTGAACGAAGAAGAAACGATTTTGATCATCAGGCGTCTACACAAGGTGCTGAGACCCTTTTTACTGAGGAGGCTGAAGAAAGAGGTTGAGTCTCAGCTTCCGGAAAAG agaacacaaagccatgtaactggtgtctacccctttctcccccatttcagGTAGACTTGAATGAGGAAGAAAAAATCTTAATCATCAGGCGTCTACACAATGTACTAAGACCGTTTTTACTGAGAAGG---AAGAAAGAGGTTGAGTCTCAACTCCCAGAAGAGgtaaggaagactatgaaggtaggtgttgctgctgcagcctatattttcgg Alignment from GeneWise GTGGACCTGAACGAAGAAGAAACGATTTTGATCATCAGGCGTCTACACAAGGTGCTGAGACCCTTTTTACTGAGGAGGCTGAAGAAAGAGGTTGAGTCTCAGCTTCCGGAAAAG agaacacaaagccatgtaactggtgtctacccctttctcccccatttcagGTAGACTTGAATGAGGAAGAAAAAATCTTAATCATCAGGCGTCTACACAATGTACTAAGACCGTTTTTACTGAGAAGG---AAGAAAGAGGTTGAGTCTCAACTCCCAGAAGAGgtaaggaagactatgaaggtaggtgttgctgctgcagcctatattttcgg #### Smarca2_ID5742_19 --> 0 - 0 Original Alignment GTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAG ccaaaatggtaacaaattaatccttctactgaccctgccattgcttccagGTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGCCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAGgtaagttttggatggacaataacttcaaataagtatgacatctagcttac Alignment from CESAR GTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAG ccaaaatggtaacaaattaatccttctactgaccctgccattgcttccagGTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGCCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAGgtaagttttggatggacaataacttcaaataagtatgacatctagcttac Alignment from Spaln_aa2Genome GTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAG ccaaaatggtaacaaattaatccttctactgaccctgccattgcttccagGTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGCCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAGgtaagttttggatggacaataacttcaaataagtatgacatctagcttac Alignment from Spaln_nt2Genome GTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAG ccaaaatggtaacaaattaatccttctactgaccctgccattgcttccagGTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGCCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAGgtaagttttggatggacaataacttcaaataagtatgacatctagcttac Alignment from Pairagon GTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAG ccaaaatggtaacaaattaatccttctactgaccctgccattgcttccagGTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGCCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAGgtaagttttggatggacaataacttcaaataagtatgacatctagcttac Alignment from Exonerate_protein2genome GTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAG ccaaaatggtaacaaattaatccttctactgaccctgccattgcttccagGTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGCCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAGgtaagttttggatggacaataacttcaaataagtatgacatctagcttac Alignment from Exonerate_coding2genome GTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAG ccaaaatggtaacaaattaatccttctactgaccctgccattgcttccagGTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGCCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAGgtaagttttggatggacaataacttcaaataagtatgacatctagcttac Alignment from GeneWise GTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAG ccaaaatggtaacaaattaatccttctactgaccctgccattgcttccagGTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGCCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAGgtaagttttggatggacaataacttcaaataagtatgacatctagcttac #### Smarca2_ID5761_28 --> 1 - 0 Original Alignment tTCAGGGCGACAGCTCAGTGAAGTCTTCATTCAGTTACCTTCCAGGAAAGACTTACCAGAATACTATGAATTAATTAGGAAGCCAGTGGATTTCAAAAAGATAAAG ttgcttccacattgtcaattgaactgaactctggggctacctaaatgcagtTCAGGGCGACAGCTGAGTGAAGTCTTCATACAGCTACCTCCCAGGAAAGACTTGCCAGAATACTATGAACTTATTAGGAAGCCAGTGGATTTCAAGAAGATAAAGgtgagttcagtgctctgtatgctagggggtaggcaaggaggattggcccg Alignment from CESAR tTCAGGGCGACAGCTCAGTGAAGTCTTCATTCAGTTACCTTCCAGGAAAGACTTACCAGAATACTATGAATTAATTAGGAAGCCAGTGGATTTCAAAAAGATAAAG ttgcttccacattgtcaattgaactgaactctggggctacctaaatgcagtTCAGGGCGACAGCTGAGTGAAGTCTTCATACAGCTACCTCCCAGGAAAGACTTGCCAGAATACTATGAACTTATTAGGAAGCCAGTGGATTTCAAGAAGATAAAGgtgagttcagtgctctgtatgctagggggtaggcaaggaggattggcccg Alignment from Spaln_aa2Genome TTCAGGGCGACAGCTCAGTGAAGTCTTCATTCAGTTACCTTCCAGGAAAGACTTACCAGAATACTATGAATTAATTAGGAAGCCAGTGGATTTCAAAAAGATAAAG ttgcttccacattgtcaattgaactgaactctggggctacctaaatgcagTTCAGGGCGACAGCTGAGTGAAGTCTTCATACAGCTACCTCCCAGGAAAGACTTGCCAGAATACTATGAACTTATTAGGAAGCCAGTGGATTTCAAGAAGATAAAGgtgagttcagtgctctgtatgctagggggtaggcaaggaggattggcccg Alignment from Spaln_nt2Genome TTCAGGGCGACAGCTCAGTGAAGTCTTCATTCAGTTACCTTCCAGGAAAGACTTACCAGAATACTATGAATTAATTAGGAAGCCAGTGGATTTCAAAAAGATAAAG ttgcttccacattgtcaattgaactgaactctggggctacctaaatgcagTTCAGGGCGACAGCTGAGTGAAGTCTTCATACAGCTACCTCCCAGGAAAGACTTGCCAGAATACTATGAACTTATTAGGAAGCCAGTGGATTTCAAGAAGATAAAGgtgagttcagtgctctgtatgctagggggtaggcaaggaggattggcccg Alignment from Pairagon TTCAGGGCGACAGCTCAGTGAAGTCTTCATTCAGTTACCTTCCAGGAAAGACTTACCAGAATACTATGAATTAATTAGGAAGCCAGTGGATTTCAAAAAGATAAAG ttgcttccacattgtcaattgaactgaactctggggctacctaaatgcagTTCAGGGCGACAGCTGAGTGAAGTCTTCATACAGCTACCTCCCAGGAAAGACTTGCCAGAATACTATGAACTTATTAGGAAGCCAGTGGATTTCAAGAAGATAAAGgtgagttcagtgctctgtatgctagggggtaggcaaggaggattggcccg Alignment from Exonerate_protein2genome TTCAGGGCGACAGCTCAGTGAAGTCTTCATTCAGTTACCTTCCAGGAAAGACTTACCAGAATACTATGAATTAATTAGGAAGCCAGTGGATTTCAAAAAGATAAAG ttgcttccacattgtcaattgaactgaactctggggctacctaaatgcagTTCAGGGCGACAGCTGAGTGAAGTCTTCATACAGCTACCTCCCAGGAAAGACTTGCCAGAATACTATGAACTTATTAGGAAGCCAGTGGATTTCAAGAAGATAAAGgtgagttcagtgctctgtatgctagggggtaggcaaggaggattggcccg Alignment from Exonerate_coding2genome TTCAGGGCGACAGCTCAGTGAAGTCTTCATTCAGTTACCTTCCAGGAAAGACTTACCAGAATACTATGAATTAATTAGGAAGCCAGTGGATTTCAAAAAGATAAAG ttgcttccacattgtcaattgaactgaactctggggctacctaaatgcagTTCAGGGCGACAGCTGAGTGAAGTCTTCATACAGCTACCTCCCAGGAAAGACTTGCCAGAATACTATGAACTTATTAGGAAGCCAGTGGATTTCAAGAAGATAAAGgtgagttcagtgctctgtatgctagggggtaggcaaggaggattggcccg Alignment from GeneWise TTCAGGGCGACAGCTCAGTGAAGTCTTCATTCAGTTACCTTCCAGGAAAGACTTACCAGAATACTATGAATTAATTAGGAAGCCAGTGGATTTCAAAAAGATAAAG ttgcttccacattgtcaattgaactgaactctggggctacctaaatgcagTTCAGGGCGACAGCTGAGTGAAGTCTTCATACAGCTACCTCCCAGGAAAGACTTGCCAGAATACTATGAACTTATTAGGAAGCCAGTGGATTTCAAGAAGATAAAGgtgagttcagtgctctgtatgctagggggtaggcaaggaggattggcccg #### Smarca2_ID5763_30 --> 0 - 1 Original Alignment ATCTACGAAGACTCCATTGTCCTACAGTCAGTGTTTAAGAGTGCTCGGCAGAAAATTGCCAAAGAAGAAGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGATGAAGAGGAGTCGGAGTCAGAGg agtatgcattgtggattcctttcagtcgtctctttgcctccaaccccaagATCTATGAAGACTCTATTGTCCTACAGTCAGTCTTCAAGAGTGCTCGGCAGAAAATTGGTAAAGAAGAGGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGATGAAGAGGAATCAGAGTCAGAGggtaagcttcatgcctgacacacttccatttatgcctggcacacttactca Alignment from CESAR ATCTACGAAGACTCCATTGTCCTACAGTCAGTGTTTAAGAGTGCTCGGCAGAAAATTGCCAAAGAAGAAGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGATGAAGAGGAGTCGGAGTCAGAGg agtatgcattgtggattcctttcagtcgtctctttgcctccaaccccaagATCTATGAAGACTCTATTGTCCTACAGTCAGTCTTCAAGAGTGCTCGGCAGAAAATTGGTAAAGAAGAGGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGATGAAGAGGAATCAGAGTCAGAGggtaagcttcatgcctgacacacttccatttatgcctggcacacttactca Alignment from Spaln_aa2Genome ATCTACGAAGACTCCATTGTCCTACAGTCAGTGTTTAAGAGTGCTCGGCAGAAAATTGCCAAAGAAGAAGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGATGAAGAGGAGTCGGAGTCAGAGG agtatgcattgtggattcctttcagtcgtctctttgcctccaaccccaagATCTATGAAGACTCTATTGTCCTACAGTCAGTCTTCAAGAGTGCTCGGCAGAAAATTGGTAAAGAAGAGGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGATGAAGAGGAATCAGAGTCAGAGGgtaagcttcatgcctgacacacttccatttatgcctggcacacttactca Alignment from Spaln_nt2Genome ATCTACGAAGACTCCATTGTCCTACAGTCAGTGTTTAAGAGTGCTCGGCAGAAAATTGCCAAAGAAGAAGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGATGAAGAGGAGTCGGAGTCAGAGG agtatgcattgtggattcctttcagtcgtctctttgcctccaaccccaagATCTATGAAGACTCTATTGTCCTACAGTCAGTCTTCAAGAGTGCTCGGCAGAAAATTGGTAAAGAAGAGGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGATGAAGAGGAATCAGAGTCAGAGGgtaagcttcatgcctgacacacttccatttatgcctggcacacttactca Alignment from Pairagon ATCTACGAAGACTCCATTGTCCTACAGTCAGTGTTTAAGAGTGCTCGGCAGAAAATTGCCAAAGAAGAAGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGATGAAGAGGAGTCGGAGTCAGAGG agtatgcattgtggattcctttcagtcgtctctttgcctccaaccccaagATCTATGAAGACTCTATTGTCCTACAGTCAGTCTTCAAGAGTGCTCGGCAGAAAATTGGTAAAGAAGAGGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGATGAAGAGGAATCAGAGTCAGAGGgtaagcttcatgcctgacacacttccatttatgcctggcacacttactca Alignment from Exonerate_protein2genome ATCTACGAAGACTCCATTGTCCTACAGTCAGTGTTTAAGAGTGCTCGGCAGAAAATTGCCAAAGAAGAAGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGATGAAGAGGAGTCGGAGTCAGAGG agtatgcattgtggattcctttcagtcgtctctttgcctccaaccccaagATCTATGAAGACTCTATTGTCCTACAGTCAGTCTTCAAGAGTGCTCGGCAGAAAATTGGTAAAGAAGAGGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGATGAAGAGGAATCAGAGTCAGAGGgtaagcttcatgcctgacacacttccatttatgcctggcacacttactca Alignment from Exonerate_coding2genome ATCTACGAAGACTCCATTGTCCTACAGTCAGTGTTTAAGAGTGCTCGGCAGAAAATTGCCAAAGAAGAAGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGATGAAGAGGAGTCGGAGTCAGAGG agtatgcattgtggattcctttcagtcgtctctttgcctccaaccccaagATCTATGAAGACTCTATTGTCCTACAGTCAGTCTTCAAGAGTGCTCGGCAGAAAATTGGTAAAGAAGAGGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGATGAAGAGGAATCAGAGTCAGAGGgtaagcttcatgcctgacacacttccatttatgcctggcacacttactca Alignment from GeneWise ATCTACGAAGACTCCATTGTCCTACAGTCAGTGTTTAAGAGTGCTCGGCAGAAAATTGCCAAAGAAGAAGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGATGAAGAGGAGTCGGAGTCAGAGG agtatgcattgtggattcctttcagtcgtctctttgcctccaaccccaagATCTATGAAGACTCTATTGTCCTACAGTCAGTCTTCAAGAGTGCTCGGCAGAAAATTGGTAAAGAAGAGGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGATGAAGAGGAATCAGAGTCAGAGGgtaagcttcatgcctgacacacttccatttatgcctggcacacttactca #### Smc3_ID11315_3 --> 2 - 1 Original Alignment tgGGCAGAAATGGCTCTGGAAAAAGCAACTTCTTTTATg actgtttgggtcttctattaacttaactttaccagtctctcttttcacagtgGGCAGAAATGGCTCTGGAAAAAGCAATTTCTTTTATggtgtgggtagtgttttggacattttagcatgtattgaaagatagcaatat Alignment from CESAR tgGGCAGAAATGGCTCTGGAAAAAGCAACTTCTTTTATg actgtttgggtcttctattaacttaactttaccagtctctcttttcacagtgGGCAGAAATGGCTCTGGAAAAAGCAATTTCTTTTATggtgtgggtagtgttttggacattttagcatgtattgaaagatagcaatat Alignment from Spaln_aa2Genome TGGGCAGAAATGGCTCTGGAAAAAGCAACTTCTTTTATG actgtttgggtcttctattaacttaactttaccagtctctcttttcacagTGGGCAGAAATGGCTCTGGAAAAAGCAATTTCTTTTATGgtgtgggtagtgttttggacattttagcatgtattgaaagatagcaatat Alignment from Spaln_nt2Genome TGGGCAGAAATGGCTCTGGAAAAAGCAACTTCTTTTATG actgtttgggtcttctattaacttaactttaccagtctctcttttcacagTGGGCAGAAATGGCTCTGGAAAAAGCAATTTCTTTTATGgtgtgggtagtgttttggacattttagcatgtattgaaagatagcaatat Alignment from Pairagon TGGGCAGAAATGGCTCTGGAAAAAGCAACTTCTTTTATG actgtttgggtcttctattaacttaactttaccagtctctcttttcacagTGGGCAGAAATGGCTCTGGAAAAAGCAATTTCTTTTATGgtgtgggtagtgttttggacattttagcatgtattgaaagatagcaatat Alignment from Exonerate_protein2genome TGGGCAGAAATGGCTCTGGAAAAAGCAACTTCTTTTATG actgtttgggtcttctattaacttaactttaccagtctctcttttcacagTGGGCAGAAATGGCTCTGGAAAAAGCAATTTCTTTTATGgtgtgggtagtgttttggacattttagcatgtattgaaagatagcaatat Alignment from Exonerate_coding2genome TGGGCAGAAATGGCTCTGGAAAAAGCAACTTCTTTTATG actgtttgggtcttctattaacttaactttaccagtctctcttttcacagTGGGCAGAAATGGCTCTGGAAAAAGCAATTTCTTTTATGgtgtgggtagtgttttggacattttagcatgtattgaaagatagcaatat Alignment from GeneWise actgtttgggtcttctattaacttaactttaccagtctctcttttcacagtgggcagaaatggctctggaaaaagcaatttcttttatggtgtgggtagtgttttggacattttagcatgtattgaaagatagcaatat #### Smc3_ID11319_7 --> 1 - 0 Original Alignment gAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAG agtcaatggtgttttctggcactggatgccagtgtcctccctgtgcacaggAAGAATGATGTTATGAATCTCCTCGAAAGTGCTGGGTTTTCGAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAGgtatgtgggcttggtgtttgcctttccttttttttttgtttagtagatgt Alignment from CESAR gAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAG agtcaatggtgttttctggcactggatgccagtgtcctccctgtgcacaggAAGAATGATGTTATGAATCTCCTCGAAAGTGCTGGGTTTTCGAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAGgtatgtgggcttggtgtttgcctttccttttttttttgtttagtagatgt Alignment from Spaln_aa2Genome GAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAG agtcaatggtgttttctggcactggatgccagtgtcctccctgtgcacagGAAGAATGATGTTATGAATCTCCTCGAAAGTGCTGGGTTTTCGAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAGgtatgtgggcttggtgtttgcctttccttttttttttgtttagtagatgt Alignment from Spaln_nt2Genome GAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAG agtcaatggtgttttctggcactggatgccagtgtcctccctgtgcacagGAAGAATGATGTTATGAATCTCCTCGAAAGTGCTGGGTTTTCGAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAGgtatgtgggcttggtgtttgcctttccttttttttttgtttagtagatgt Alignment from Pairagon GAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAG agtcaatggtgttttctggcactggatgccagtgtcctccctgtgcacagGAAGAATGATGTTATGAATCTCCTCGAAAGTGCTGGGTTTTCGAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAGgtatgtgggcttggtgtttgcctttccttttttttttgtttagtagatgt Alignment from Exonerate_protein2genome GAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAG agtcaatggtgttttctggcactggatgccagtgtcctccctgtgcacagGAAGAATGATGTTATGAATCTCCTCGAAAGTGCTGGGTTTTCGAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAGgtatgtgggcttggtgtttgcctttccttttttttttgtttagtagatgt Alignment from Exonerate_coding2genome GAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAG agtcaatggtgttttctggcactggatgccagtgtcctccctgtgcacagGAAGAATGATGTTATGAATCTCCTCGAAAGTGCTGGGTTTTCGAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAGgtatgtgggcttggtgtttgcctttccttttttttttgtttagtagatgt Alignment from GeneWise GAAAAATGATGTGATGAATCTCCTTGAAAGTGCTGGGTTTTCCAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAG agtcaatggtgttttctggcactggatgccagtgtcctccctgtgcacagGAAGAATGATGTTATGAATCTCCTCGAAAGTGCTGGGTTTTCGAGAAGTAATCCTTATTACATTGTTAAACAAGGAAAGgtatgtgggcttggtgtttgcctttccttttttttttgtttagtagatgt #### Smc3_ID11322_10 --> 0 - 0 Original Alignment CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG gtttttatccaatgtttaaagtggatagatgcgttttgtatcctgcttagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGAAATCAAGACAACTAAGGGATGCACAGCAGGATACAAGAGATAAAATGGAGgtaggttgatacctaaggtcatacctagcttccaatgttacttgtaccga Alignment from CESAR CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG gtttttatccaatgtttaaagtggatagatgcgttttgtatcctgcttagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGAAATCAAGACAACTAAGGGATGCACAGCAGGATACAAGAGATAAAATGGAGgtaggttgatacctaaggtcatacctagcttccaatgttacttgtaccga Alignment from Spaln_aa2Genome CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG gtttttatccaatgtttaaagtggatagatgcgttttgtatcctgcttagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGAAATCAAGACAACTAAGGGATGCACAGCAGGATACAAGAGATAAAATGGAGgtaggttgatacctaaggtcatacctagcttccaatgttacttgtaccga Alignment from Spaln_nt2Genome CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG gtttttatccaatgtttaaagtggatagatgcgttttgtatcctgcttagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGAAATCAAGACAACTAAGGGATGCACAGCAGGATACAAGAGATAAAATGGAGgtaggttgatacctaaggtcatacctagcttccaatgttacttgtaccga Alignment from Pairagon CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG gtttttatccaatgtttaaagtggatagatgcgttttgtatcctgcttagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGAAATCAAGACAACTAAGGGATGCACAGCAGGATACAAGAGATAAAATGGAGgtaggttgatacctaaggtcatacctagcttccaatgttacttgtaccga Alignment from Exonerate_protein2genome CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG gtttttatccaatgtttaaagtggatagatgcgttttgtatcctgcttagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGAAATCAAGACAACTAAGGGATGCACAGCAGGATACAAGAGATAAAATGGAGgtaggttgatacctaaggtcatacctagcttccaatgttacttgtaccga Alignment from Exonerate_coding2genome CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG gtttttatccaatgtttaaagtggatagatgcgttttgtatcctgcttagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGAAATCAAGACAACTAAGGGATGCACAGCAGGATACAAGAGATAAAATGGAGgtaggttgatacctaaggtcatacctagcttccaatgttacttgtaccga Alignment from GeneWise CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG gtttttatccaatgtttaaagtggatagatgcgttttgtatcctgcttagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGAAATCAAGACAACTAAGGGATGCACAGCAGGATACAAGAGATAAAATGGAGgtaggttgatacctaaggtcatacctagcttccaatgttacttgtaccga #### Smc3_ID11329_17 --> 1 - 0 Original Alignment gTTATTTTATCACATTGTTGATTCAGATGAAGTCAGCACGAAAATTTTAATGGAGTTCAATAAAATGAATCTTCCTGGAGAGGTGACTTTCCTGCCTCTTAACAAGTTAGATGTGAGAGATACTGCCTATCCTGAAACTAAC gtgtgaatgggaccttaaacactgaaaatctgagctctctttgttcccaggTTGTTTTATCACATTGTTGATTCAGATGAAGTTGGAACAAAAATTTTGATGGAGTTCAATAAAATGAATCTACCTGGAGAGGTGACTTTCCTGCCTCTTAACAAGTTAGATGTGAGAGATACTGCCTATCCTGAAGCCAATgtaagtcatttgtaaagactctcagtagctttaatgtgttttttggtttc Alignment from CESAR gTTATTTTATCACATTGTTGATTCAGATGAAGTCAGCACGAAAATTTTAATGGAGTTCAATAAAATGAATCTTCCTGGAGAGGTGACTTTCCTGCCTCTTAACAAGTTAGATGTGAGAGATACTGCCTATCCTGAAACTAAC gtgtgaatgggaccttaaacactgaaaatctgagctctctttgttcccaggTTGTTTTATCACATTGTTGATTCAGATGAAGTTGGAACAAAAATTTTGATGGAGTTCAATAAAATGAATCTACCTGGAGAGGTGACTTTCCTGCCTCTTAACAAGTTAGATGTGAGAGATACTGCCTATCCTGAAGCCAATgtaagtcatttgtaaagactctcagtagctttaatgtgttttttggtttc Alignment from Spaln_aa2Genome GTTATTTTATCACATTGTTGATTCAGATGAAGTCAGCACGAAAATTTTAATGGAGTTCAATAAAATGAATCTTCCTGGAGAGGTGACTTTCCTGCCTCTTAACAAGTTAGATGTGAGAGATACTGCCTATCCTGAAACTAAC gtgtgaatgggaccttaaacactgaaaatctgagctctctttgttcccagGTTGTTTTATCACATTGTTGATTCAGATGAAGTTGGAACAAAAATTTTGATGGAGTTCAATAAAATGAATCTACCTGGAGAGGTGACTTTCCTGCCTCTTAACAAGTTAGATGTGAGAGATACTGCCTATCCTGAAGCCAATgtaagtcatttgtaaagactctcagtagctttaatgtgttttttggtttc Alignment from Spaln_nt2Genome GTTATTTTATCACATTGTTGATTCAGATGAAGTCAGCACGAAAATTTTAATGGAGTTCAATAAAATGAATCTTCCTGGAGAGGTGACTTTCCTGCCTCTTAACAAGTTAGATGTGAGAGATACTGCCTATCCTGAAACTAAC gtgtgaatgggaccttaaacactgaaaatctgagctctctttgttcccagGTTGTTTTATCACATTGTTGATTCAGATGAAGTTGGAACAAAAATTTTGATGGAGTTCAATAAAATGAATCTACCTGGAGAGGTGACTTTCCTGCCTCTTAACAAGTTAGATGTGAGAGATACTGCCTATCCTGAAGCCAATgtaagtcatttgtaaagactctcagtagctttaatgtgttttttggtttc Alignment from Pairagon GTTATTTTATCACATTGTTGATTCAGATGAAGTCAGCACGAAAATTTTAATGGAGTTCAATAAAATGAATCTTCCTGGAGAGGTGACTTTCCTGCCTCTTAACAAGTTAGATGTGAGAGATACTGCCTATCCTGAAACTAAC gtgtgaatgggaccttaaacactgaaaatctgagctctctttgttcccagGTTGTTTTATCACATTGTTGATTCAGATGAAGTTGGAACAAAAATTTTGATGGAGTTCAATAAAATGAATCTACCTGGAGAGGTGACTTTCCTGCCTCTTAACAAGTTAGATGTGAGAGATACTGCCTATCCTGAAGCCAATgtaagtcatttgtaaagactctcagtagctttaatgtgttttttggtttc Alignment from Exonerate_protein2genome GTTATTTTATCACATTGTTGATTCAGATGAAGTCAGCACGAAAATTTTAATGGAGTTCAATAAAATGAATCTTCCTGGAGAGGTGACTTTCCTGCCTCTTAACAAGTTAGATGTGAGAGATACTGCCTATCCTGAAACTAAC gtgtgaatgggaccttaaacactgaaaatctgagctctctttgttcccagGTTGTTTTATCACATTGTTGATTCAGATGAAGTTGGAACAAAAATTTTGATGGAGTTCAATAAAATGAATCTACCTGGAGAGGTGACTTTCCTGCCTCTTAACAAGTTAGATGTGAGAGATACTGCCTATCCTGAAGCCAATgtaagtcatttgtaaagactctcagtagctttaatgtgttttttggtttc Alignment from Exonerate_coding2genome GTTATTTTATCACATTGTTGATTCAGATGAAGTCAGCACGAAAATTTTAATGGAGTTCAATAAAATGAATCTTCCTGGAGAGGTGACTTTCCTGCCTCTTAACAAGTTAGATGTGAGAGATACTGCCTATCCTGAAACTAAC gtgtgaatgggaccttaaacactgaaaatctgagctctctttgttcccagGTTGTTTTATCACATTGTTGATTCAGATGAAGTTGGAACAAAAATTTTGATGGAGTTCAATAAAATGAATCTACCTGGAGAGGTGACTTTCCTGCCTCTTAACAAGTTAGATGTGAGAGATACTGCCTATCCTGAAGCCAATgtaagtcatttgtaaagactctcagtagctttaatgtgttttttggtttc Alignment from GeneWise GTTATTTTATCACATTGTTGATTCAGATGAAGTCAGCACGAAAATTTTAATGGAGTTCAATAAAATGAATCTTCCTGGAGAGGTGACTTTCCTGCCTCTTAACAAGTTAGATGTGAGAGATACTGCCTATCCTGAAACTAAC gtgtgaatgggaccttaaacactgaaaatctgagctctctttgttcccagGTTGTTTTATCACATTGTTGATTCAGATGAAGTTGGAACAAAAATTTTGATGGAGTTCAATAAAATGAATCTACCTGGAGAGGTGACTTTCCTGCCTCTTAACAAGTTAGATGTGAGAGATACTGCCTATCCTGAAGCCAATgtaagtcatttgtaaagactctcagtagctttaatgtgttttttggtttc #### Smc3_ID11334_22 --> 0 - 0 Original Alignment GAAAACAGACAGCTGCTAAATGAAAGAATTAAACTAGAAGGCATTATTACTCGAGTAGAGACTTACCTGAATGAGAATCTGAGGAAACGCTTGGACCAAGTAGAACAG caacattttaataattctcaatattctgtgagaatattttgtgttcccagGAAAACAGGCAACTGCTAAACGAAAGAATTAAACTAGAGGGTATAATTACACAAGTAAAGACTTACCTAAACAAGAATCTGAGAAAATGCTTGGACCAAGTAGAGCAGgtataaatcccagatccctatgctcatcccaagtggtgaggagtgaacaa Alignment from CESAR GAAAACAGACAGCTGCTAAATGAAAGAATTAAACTAGAAGGCATTATTACTCGAGTAGAGACTTACCTGAATGAGAATCTGAGGAAACGCTTGGACCAAGTAGAACAG caacattttaataattctcaatattctgtgagaatattttgtgttcccagGAAAACAGGCAACTGCTAAACGAAAGAATTAAACTAGAGGGTATAATTACACAAGTAAAGACTTACCTAAACAAGAATCTGAGAAAATGCTTGGACCAAGTAGAGCAGgtataaatcccagatccctatgctcatcccaagtggtgaggagtgaacaa Alignment from Spaln_aa2Genome GAAAACAGACAGCTGCTAAATGAAAGAATTAAACTAGAAGGCATTATTACTCGAGTAGAGACTTACCTGAATGAGAATCTGAGGAAACGCTTGGACCAAGTAGAACAG caacattttaataattctcaatattctgtgagaatattttgtgttcccagGAAAACAGGCAACTGCTAAACGAAAGAATTAAACTAGAGGGTATAATTACACAAGTAAAGACTTACCTAAACAAGAATCTGAGAAAATGCTTGGACCAAGTAGAGCAGgtataaatcccagatccctatgctcatcccaagtggtgaggagtgaacaa Alignment from Spaln_nt2Genome GAAAACAGACAGCTGCTAAATGAAAGAATTAAACTAGAAGGCATTATTACTCGAGTAGAGACTTACCTGAATGAGAATCTGAGGAAACGCTTGGACCAAGTAGAACAG caacattttaataattctcaatattctgtgagaatattttgtgttcccagGAAAACAGGCAACTGCTAAACGAAAGAATTAAACTAGAGGGTATAATTACACAAGTAAAGACTTACCTAAACAAGAATCTGAGAAAATGCTTGGACCAAGTAGAGCAGgtataaatcccagatccctatgctcatcccaagtggtgaggagtgaacaa Alignment from Pairagon GAAAACAGACAGCTGCTAAATGAAAGAATTAAACTAGAAGGCATTATTACTCGAGTAGAGACTTACCTGAATGAGAATCTGAGGAAACGCTTGGACCAAGTAGAACAG caacattttaataattctcaatattctgtgagaatattttgtgttcccagGAAAACAGGCAACTGCTAAACGAAAGAATTAAACTAGAGGGTATAATTACACAAGTAAAGACTTACCTAAACAAGAATCTGAGAAAATGCTTGGACCAAGTAGAGCAGgtataaatcccagatccctatgctcatcccaagtggtgaggagtgaacaa Alignment from Exonerate_protein2genome GAAAACAGACAGCTGCTAAATGAAAGAATTAAACTAGAAGGCATTATTACTCGAGTAGAGACTTACCTGAATGAGAATCTGAGGAAACGCTTGGACCAAGTAGAACAG caacattttaataattctcaatattctgtgagaatattttgtgttcccagGAAAACAGGCAACTGCTAAACGAAAGAATTAAACTAGAGGGTATAATTACACAAGTAAAGACTTACCTAAACAAGAATCTGAGAAAATGCTTGGACCAAGTAGAGCAGgtataaatcccagatccctatgctcatcccaagtggtgaggagtgaacaa Alignment from Exonerate_coding2genome GAAAACAGACAGCTGCTAAATGAAAGAATTAAACTAGAAGGCATTATTACTCGAGTAGAGACTTACCTGAATGAGAATCTGAGGAAACGCTTGGACCAAGTAGAACAG caacattttaataattctcaatattctgtgagaatattttgtgttcccagGAAAACAGGCAACTGCTAAACGAAAGAATTAAACTAGAGGGTATAATTACACAAGTAAAGACTTACCTAAACAAGAATCTGAGAAAATGCTTGGACCAAGTAGAGCAGgtataaatcccagatccctatgctcatcccaagtggtgaggagtgaacaa Alignment from GeneWise GAAAACAGACAGCTGCTAAATGAAAGAATTAAACTAGAAGGCATTATTACTCGAGTAGAGACTTACCTGAATGAGAATCTGAGGAAACGCTTGGACCAAGTAGAACAG caacattttaataattctcaatattctgtgagaatattttgtgttcccagGAAAACAGGCAACTGCTAAACGAAAGAATTAAACTAGAGGGTATAATTACACAAGTAAAGACTTACCTAAACAAGAATCTGAGAAAATGCTTGGACCAAGTAGAGCAGgtataaatcccagatccctatgctcatcccaagtggtgaggagtgaacaa #### Smc3_ID11336_24 --> 2 - 0 Original Alignment atTTGGACAATTCCATTGACAAAACAGAAGCTGGAATTAAAGAGCTCCAGAAAAGTATGGAGCGCTGGAAAAATATGGAGAAAGAACACATGGATGCCATAAATCATGATACTAAAGAGCTGGAGAAGATGACCAACCGGCAAGGCATGCTGTTGAAGAAGAAGGAGGAGTGTATGAAGAAGATCCGGGAGCTGGGGTCCCTCCCCCAGGAAGCGTTTGAGAAGTACCAGACACTGAGCCTGAAGCAG agaagaatccgatggtgaggcgttctcctctcccctctgtgtatgtttagacTTGGAAAATTCTCTTTACAAGACAAAAGCTGGAATTATGGAGTTCCAACAAAGT------ACCTGGCAAAATATGGAGAAAGAGCACATGGATGCCATAAATCACGATATGAAAGAGTTAGATAAGATGACAAACCAACAAGGCATGCTTCTTAAA---AAGCAA---------AAAAAGATCCAGGAGCTGGGATCCCTTCCCTGGGAAGCATTTGAGGAGGATCAGACACTGCGCTTGAAGGAGgtaaaggtgtttgcaataagtggtaggcccccctatccatcctgtagatc Alignment from CESAR atTTGGACAATTCCATTGACAAAACAGAAGCTGGAATTAAAGAGCTCCAGAAAAGTATGGAGCGCTGGAAAAATATGGAGAAAGAACACATGGATGCCATAAATCATGATACTAAAGAGCTGGAGAAGATGACCAACCGGCAAGGCATGCTGTTGAAGAAGAAGGAGGAGTGTATGAAGAAGATCCGGGAGCTGGGGTCCCTCCCCCAGGAAGCGTTTGAGAAGTACCAGACACTGAGCCTGAAGCAG agaagaatccgatggtgaggcgttctcctctcccctctgtgtatgtttagacTTGGAAAATTCTCTTTACAAGACAAAAGCTGGAATTATGGAGTTCCAACAAAGTACC------TGGCAAAATATGGAGAAAGAGCACATGGATGCCATAAATCACGATATGAAAGAGTTAGATAAGATGACAAACCAACAAGGCATGCTTCTTAAAAAGCAA------------AAAAAGATCCAGGAGCTGGGATCCCTTCCCTGGGAAGCATTTGAGGAGGATCAGACACTGCGCTTGAAGGAGgtaaaggtgtttgcaataagtggtaggcccccctatccatcctgtagatc Alignment from Spaln_aa2Genome ATTTGGACAATTCCATTGACAAAACAGAAGCTGGAATTAAAGAGCTCCAGAAAAGTATGGAGCGCTGGAAAAATATGGAGAAAGAACACATGGATGCCATAAATCATGATACTAAAGAGCTGGAGAAGATGACCAACCGGCAAGGCATGCTGTTGAAGAAGAAGGAGGAGTGTATGAAGAAGATCCGGGAGCTGGGGTCCCTCCCCCAGGAAGCGTTTGAGAAGTACCAGACACTGAGCCTGAAGCAG agaagaatccgatggtgaggcgttctcctctcccctctgtgtatgtttagACTTGGAAAATTCTCTTTACAAGACAAAAGCTGGAATTATGGAGTTCCAACAAAGTACC------TGGCAAAATATGGAGAAAGAGCACATGGATGCCATAAATCACGATATGAAAGAGTTAGATAAGATGACAAACCAACAAGGCATGCTTCTTAAAAAGCAA------------AAAAAGATCCAGGAGCTGGGATCCCTTCCCTGGGAAGCATTTGAGGAGGATCAGACACTGCGCTTGAAGGAGgtaaaggtgtttgcaataagtggtaggcccccctatccatcctgtagatc Alignment from Spaln_nt2Genome ATTTGGACAATTCCATTGACAAAACAGAAGCTGGAATTAAAGAGCTCCAGAAAAGTATGGAGCGCTGGAAAAATATGGAGAAAGAACACATGGATGCCATAAATCATGATACTAAAGAGCTGGAGAAGATGACCAACCGGCAAGGCATGCTGTTGAAGAAGAAGGAGGAGTGTATGAAGAAGATCCGGGAGCTGGGGTCCCTCCCCCAGGAAGCGTTTGAGAAGTACCAGACACTGAGCCTGAAGCAG agaagaatccgatggtgaggcgttctcctctcccctctgtgtatgtttagACTTGGAAAATTCTCTTTACAAGACAAAAGCTGGAATTATGGAGTTCCAACAAAGTA------CCTGGCAAAATATGGAGAAAGAGCACATGGATGCCATAAATCACGATATGAAAGAGTTAGATAAGATGACAAACCAACAAGGCATGCTTCTTAAAAAGCA------------AAAAAAGATCCAGGAGCTGGGATCCCTTCCCTGGGAAGCATTTGAGGAGGATCAGACACTGCGCTTGAAGGAGgtaaaggtgtttgcaataagtggtaggcccccctatccatcctgtagatc Alignment from Pairagon ATTTGGACAATTCCATTGACAAAACAGAAGCTGGAATTAAAGAGCTCCAGAAAAGTATGGAGCGCTGGAAAAATATGGAGAAAGAACACATGGATGCCATAAATCATGATACTAAAGAGCTGGAGAAGATGACCAACCGGCAAGGCATGCTGTTGAAGAAGAAGGAGGAGTGTATGAAGAAGATCCGGGAGCTGGGGTCCCTCCCCCAGGAAGCGTTTGAGAAGTACCAGACACTGAGCCTGAAGCAG agaagaatccgatggtgaggcgttctcctctcccctctgtgtatgtttagACTTGGAAAATTCTCTTTACAAGACAAAAGCTGGAATTATGGAGTTCCAACAAAGTAC------CTGGCAAAATATGGAGAAAGAGCACATGGATGCCATAAATCACGATATGAAAGAGTTAGATAAGATGACAAACCAACAAGGCATGCTTCTTAAAAAGCA------------AAAAAAGATCCAGGAGCTGGGATCCCTTCCCTGGGAAGCATTTGAGGAGGATCAGACACTGCGCTTGAAGGAGgtaaaggtgtttgcaataagtggtaggcccccctatccatcctgtagatc Alignment from Exonerate_protein2genome ATTTGGACAATTCCATTGACAAAACAGAAGCTGGAATTAAAGAGCTCCAGAAAAGTATGGAGCGCTGGAAAAATATGGAGAAAGAACACATGGATGCCATAAATCATGATACTAAAGAGCTGGAGAAGATGACCAACCGGCAAGGCATGCTGTTGAAGAAGAAGGAGGAGTGTATGAAGAAGATCCGGGAGCTGGGGTCCCTCCCCCAGGAAGCGTTTGAGAAGTACCAGACACTGAGCCTGAAGCAG agaagaatccgatggtgaggcgttctcctctcccctctgtgtatgtttagACTTGGAAAATTCTCTTTACAAGACAAAAGCTGGAATTATGGAGTTCCAACAAAGT------ACCTGGCAAAATATGGAGAAAGAGCACATGGATGCCATAAATCACGATATGAAAGAGTTAGATAAGATGACAAACCAACAAGGCATGCTTCTTAAAAAGCAA------------AAAAAGATCCAGGAGCTGGGATCCCTTCCCTGGGAAGCATTTGAGGAGGATCAGACACTGCGCTTGAAGGAGgtaaaggtgtttgcaataagtggtaggcccccctatccatcctgtagatc Alignment from Exonerate_coding2genome ATTTGGACAATTCCATTGACAAAACAGAAGCTGGAATTAAAGAGCTCCAGAAAAGTATGGAGCGCTGGAAAAATATGGAGAAAGAACACATGGATGCCATAAATCATGATACTAAAGAGCTGGAGAAGATGACCAACCGGCAAGGCATGCTGTTGAAGAAGAAGGAGGAGTGTATGAAGAAGATCCGGGAGCTGGGGTCCCTCCCCCAGGAAGCGTTTGAGAAGTACCAGACACTGAGCCTGAAGCAG agaagaatccgatggtgaggcgttctcctctcccctctgtgtatgtttagACTTGGAAAATTCTCTTTACAAGACAAAAGCTGGAATTATGGAGTTCCAACAAAGT------ACCTGGCAAAATATGGAGAAAGAGCACATGGATGCCATAAATCACGATATGAAAGAGTTAGATAAGATGACAAACCAACAAGGCATGCTTCTTAAAAAGCAA------------AAAAAGATCCAGGAGCTGGGATCCCTTCCCTGGGAAGCATTTGAGGAGGATCAGACACTGCGCTTGAAGGAGgtaaaggtgtttgcaataagtggtaggcccccctatccatcctgtagatc Alignment from GeneWise ATTTGGACAATTCCATTGACAAAACAGAAGCTGGAATTAAAGAGCTCCAGAAAAGTATGGAGCGCTGGAAAAATATGGAGAAAGAACACATGGATGCCATAAATCATGATACTAAAGAGCTGGAGAAGATGACCAACCGGCAAGGCATGCTGTTGAAGAAGAAGGAGGAGTGTATGAAGAAGATCCGGGAGCTGGGGTCCCTCCCCCAGGAAGCGTTTGAGAAGTACCAGACACTGAGCCTGAAGCAG agaagaatccgatggtgaggcgttctcctctcccctctgtgtatgtttagACTTGGAAAATTCTCTTTACAAGACAAAAGCTGGAATTATGGAGTTCCAACAAAGTACC------TGGCAAAATATGGAGAAAGAGCACATGGATGCCATAAATCACGATATGAAAGAGTTAGATAAGATGACAAACCAACAAGGCATGCTTCTTAAAAAGCAA------------AAAAAGATCCAGGAGCTGGGATCCCTTCCCTGGGAAGCATTTGAGGAGGATCAGACACTGCGCTTGAAGGAGgtaaaggtgtttgcaataagtggtaggcccccctatccatcctgtagatc #### Smc3_ID11338_26 --> 0 - 0 Original Alignment GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG gtttaagaagagaagcatgccacctagatttctttctctctctcttttagGTATCTAAGAACTTCAGTGAAGTCTTCCAGAAATTGGTACCTGGTGGCAAAGCAACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGCGAATCTAAGGACAAAGGAGAGGGGAGTGGTGAGAGTGAGCGAGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgacttattatacttagtttctgttgtacctttttactttaaaac Alignment from CESAR GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG gtttaagaagagaagcatgccacctagatttctttctctctctcttttagGTATCTAAGAACTTCAGTGAAGTCTTCCAGAAATTGGTACCTGGTGGCAAAGCAACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGCGAATCTAAGGACAAAGGAGAGGGGAGTGGTGAGAGTGAGCGAGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgacttattatacttagtttctgttgtacctttttactttaaaac Alignment from Spaln_aa2Genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG gtttaagaagagaagcatgccacctagatttctttctctctctcttttagGTATCTAAGAACTTCAGTGAAGTCTTCCAGAAATTGGTACCTGGTGGCAAAGCAACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGCGAATCTAAGGACAAAGGAGAGGGGAGTGGTGAGAGTGAGCGAGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgacttattatacttagtttctgttgtacctttttactttaaaac Alignment from Spaln_nt2Genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG gtttaagaagagaagcatgccacctagatttctttctctctctcttttagGTATCTAAGAACTTCAGTGAAGTCTTCCAGAAATTGGTACCTGGTGGCAAAGCAACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGCGAATCTAAGGACAAAGGAGAGGGGAGTGGTGAGAGTGAGCGAGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgacttattatacttagtttctgttgtacctttttactttaaaac Alignment from Pairagon GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG gtttaagaagagaagcatgccacctagatttctttctctctctcttttagGTATCTAAGAACTTCAGTGAAGTCTTCCAGAAATTGGTACCTGGTGGCAAAGCAACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGCGAATCTAAGGACAAAGGAGAGGGGAGTGGTGAGAGTGAGCGAGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgacttattatacttagtttctgttgtacctttttactttaaaac Alignment from Exonerate_protein2genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG gtttaagaagagaagcatgccacctagatttctttctctctctcttttagGTATCTAAGAACTTCAGTGAAGTCTTCCAGAAATTGGTACCTGGTGGCAAAGCAACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGCGAATCTAAGGACAAAGGAGAGGGGAGTGGTGAGAGTGAGCGAGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgacttattatacttagtttctgttgtacctttttactttaaaac Alignment from Exonerate_coding2genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG gtttaagaagagaagcatgccacctagatttctttctctctctcttttagGTATCTAAGAACTTCAGTGAAGTCTTCCAGAAATTGGTACCTGGTGGCAAAGCAACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGCGAATCTAAGGACAAAGGAGAGGGGAGTGGTGAGAGTGAGCGAGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgacttattatacttagtttctgttgtacctttttactttaaaac Alignment from GeneWise GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG gtttaagaagagaagcatgccacctagatttctttctctctctcttttagGTATCTAAGAACTTCAGTGAAGTCTTCCAGAAATTGGTACCTGGTGGCAAAGCAACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGCGAATCTAAGGACAAAGGAGAGGGGAGTGGTGAGAGTGAGCGAGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgacttattatacttagtttctgttgtacctttttactttaaaac #### Smc5_ID5108_23 --> 0 - 0 Original Alignment GAAGATTATGATAAATATGGAATCCGGATTAGAGTAAAATTTCGCAGTAGTACTCAGCTGCATGAATTAACTCCTCATCATCAAAGTGGAGGTGAAAGAAGTGTTTCTACTATGCTATACTTGATGGCACTTCAGGAGCTTAACAGATGTCCGTTCAGAGTAGTCGATGAAATTAATCAG G ccagcaatggaacatagctgatgaaagctatgaatgtgactctcttaaagGAAGATTATGATAAATATGGAATCCGGATTAGAGTAAAATTTCGCGGTAGTACCCAGCTGCATGAATTAACTCCTCATCACCAAAGTGGAGGTGAAAGAAGTGTTTCAACTATGCTATACCTAATGGCACTCCAGGAACTTAACAGATGTCTGTTCAGGGTAGTTGATGAAATTAATCAGgtaagctaccattatgtggtgaatgtttcagcttgcttcctttcctcagG Alignment from CESAR GAAGATTATGATAAATATGGAATCCGGATTAGAGTAAAATTTCGCAGTAGTACTCAGCTGCATGAATTAACTCCTCATCATCAAAGTGGAGGTGAAAGAAGTGTTTCTACTATGCTATACTTGATGGCACTTCAGGAGCTTAACAGATGTCCGTTCAGAGTAGTCGATGAAATTAATCAG G ccagcaatggaacatagctgatgaaagctatgaatgtgactctcttaaagGAAGATTATGATAAATATGGAATCCGGATTAGAGTAAAATTTCGCGGTAGTACCCAGCTGCATGAATTAACTCCTCATCACCAAAGTGGAGGTGAAAGAAGTGTTTCAACTATGCTATACCTAATGGCACTCCAGGAACTTAACAGATGTCTGTTCAGGGTAGTTGATGAAATTAATCAGgtaagctaccattatgtggtgaatgtttttctccatggtcttgtgacagG Alignment from Spaln_aa2Genome GAAGATTATGATAAATATGGAATCCGGATTAGAGTAAAATTTCGCAGTAGTACTCAGCTGCATGAATTAACTCCTCATCATCAAAGTGGAGGTGAAAGAAGTGTTTCTACTATGCTATACTTGATGGCACTTCAGGAGCTTAACAGATGTCCGTTCAGAGTAGTCGATGAAATTAATCAG G ccagcaatggaacatagctgatgaaagctatgaatgtgactctcttaaagGAAGATTATGATAAATATGGAATCCGGATTAGAGTAAAATTTCGCGGTAGTACCCAGCTGCATGAATTAACTCCTCATCACCAAAGTGGAGGTGAAAGAAGTGTTTCAACTATGCTATACCTAATGGCACTCCAGGAACTTAACAGATGTCTGTTCAGGGTAGTTGATGAAATTAATCAGgtaagctaccattatgtggtgaatgtttcagcttgcttcctttcctcagG Alignment from Spaln_nt2Genome GAAGATTATGATAAATATGGAATCCGGATTAGAGTAAAATTTCGCAGTAGTACTCAGCTGCATGAATTAACTCCTCATCATCAAAGTGGAGGTGAAAGAAGTGTTTCTACTATGCTATACTTGATGGCACTTCAGGAGCTTAACAGATGTCCGTTCAGAGTAGTCGATGAAATTAATCAG G ccagcaatggaacatagctgatgaaagctatgaatgtgactctcttaaagGAAGATTATGATAAATATGGAATCCGGATTAGAGTAAAATTTCGCGGTAGTACCCAGCTGCATGAATTAACTCCTCATCACCAAAGTGGAGGTGAAAGAAGTGTTTCAACTATGCTATACCTAATGGCACTCCAGGAACTTAACAGATGTCTGTTCAGGGTAGTTGATGAAATTAATCAGgtaagctaccattatgtggtgaatgtttcagcttgcttcctttcctcagG Alignment from Pairagon GAAGATTATGATAAATATGGAATCCGGATTAGAGTAAAATTTCGCAGTAGTACTCAGCTGCATGAATTAACTCCTCATCATCAAAGTGGAGGTGAAAGAAGTGTTTCTACTATGCTATACTTGATGGCACTTCAGGAGCTTAACAGATGTCCGTTCAGAGTAGTCGATGAAATTAATCAG G ccagcaatggaacatagctgatgaaagctatgaatgtgactctcttaaagGAAGATTATGATAAATATGGAATCCGGATTAGAGTAAAATTTCGCGGTAGTACCCAGCTGCATGAATTAACTCCTCATCACCAAAGTGGAGGTGAAAGAAGTGTTTCAACTATGCTATACCTAATGGCACTCCAGGAACTTAACAGATGTCTGTTCAGGGTAGTTGATGAAATTAATCAGgtaagctaccattatgtggtgaatgtttcagcttgcttcctttcctcagG Alignment from Exonerate_protein2genome GAAGATTATGATAAATATGGAATCCGGATTAGAGTAAAATTTCGCAGTAGTACTCAGCTGCATGAATTAACTCCTCATCATCAAAGTGGAGGTGAAAGAAGTGTTTCTACTATGCTATACTTGATGGCACTTCAGGAGCTTAACAGATGTCCGTTCAGAGTAGTCGATGAAATTAATCAG G ccagcaatggaacatagctgatgaaagctatgaatgtgactctcttaaagGAAGATTATGATAAATATGGAATCCGGATTAGAGTAAAATTTCGCGGTAGTACCCAGCTGCATGAATTAACTCCTCATCACCAAAGTGGAGGTGAAAGAAGTGTTTCAACTATGCTATACCTAATGGCACTCCAGGAACTTAACAGATGTCTGTTCAGGGTAGTTGATGAAATTAATCAGgtaagctaccattatgtggtgaatgtttcagcttgcttcctttcctcagG Alignment from Exonerate_coding2genome GAAGATTATGATAAATATGGAATCCGGATTAGAGTAAAATTTCGCAGTAGTACTCAGCTGCATGAATTAACTCCTCATCATCAAAGTGGAGGTGAAAGAAGTGTTTCTACTATGCTATACTTGATGGCACTTCAGGAGCTTAACAGATGTCCGTTCAGAGTAGTCGATGAAATTAATCAG G ccagcaatggaacatagctgatgaaagctatgaatgtgactctcttaaagGAAGATTATGATAAATATGGAATCCGGATTAGAGTAAAATTTCGCGGTAGTACCCAGCTGCATGAATTAACTCCTCATCACCAAAGTGGAGGTGAAAGAAGTGTTTCAACTATGCTATACCTAATGGCACTCCAGGAACTTAACAGATGTCTGTTCAGGGTAGTTGATGAAATTAATCAGgtaagctaccattatgtggtgaatgtttcagcttgcttcctttcctcagG Alignment from GeneWise GAAGATTATGATAAATATGGAATCCGGATTAGAGTAAAATTTCGCAGTAGTACTCAGCTGCATGAATTAACTCCTCATCATCAAAGTGGAGGTGAAAGAAGTGTTTCTACTATGCTATACTTGATGGCACTTCAGGAGCTTAACAGATGTCCGTTCAGAGTAGTCGATGAAATTAATCAG G ccagcaatggaacatagctgatgaaagctatgaatgtgactctcttaaagGAAGATTATGATAAATATGGAATCCGGATTAGAGTAAAATTTCGCGGTAGTACCCAGCTGCATGAATTAACTCCTCATCACCAAAGTGGAGGTGAAAGAAGTGTTTCAACTATGCTATACCTAATGGCACTCCAGGAACTTAACAGATGTCTGTTCAGGGTAGTTGATGAAATTAATCAGgtaagctaccattatgtggtgaatgtttcagcttgcttcctttcctcagG #### Smc5_ID5110_21 --> 0 - 0 Original Alignment GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tactctaattttgttttatcccatattattgccccgtccaatctttccagGTGGTCGAGAAGTATTCAAAGAGAGAAGTAGAGATTCAGCAATTGACTGAGGAACTGCAAGGTAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtaaggaataagcttttccagtgtcatgatcaagatttgattacaaacta Alignment from CESAR GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tactctaattttgttttatcccatattattgccccgtccaatctttccagGTGGTCGAGAAGTATTCAAAGAGAGAAGTAGAGATTCAGCAATTGACTGAGGAACTGCAAGGTAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtaaggaataagcttttccagtgtcatgatcaagatttgattacaaacta Alignment from Spaln_aa2Genome GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tactctaattttgttttatcccatattattgccccgtccaatctttccagGTGGTCGAGAAGTATTCAAAGAGAGAAGTAGAGATTCAGCAATTGACTGAGGAACTGCAAGGTAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtaaggaataagcttttccagtgtcatgatcaagatttgattacaaacta Alignment from Spaln_nt2Genome GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tactctaattttgttttatcccatattattgccccgtccaatctttccagGTGGTCGAGAAGTATTCAAAGAGAGAAGTAGAGATTCAGCAATTGACTGAGGAACTGCAAGGTAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtaaggaataagcttttccagtgtcatgatcaagatttgattacaaacta Alignment from Pairagon GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tactctaattttgttttatcccatattattgccccgtccaatctttccagGTGGTCGAGAAGTATTCAAAGAGAGAAGTAGAGATTCAGCAATTGACTGAGGAACTGCAAGGTAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtaaggaataagcttttccagtgtcatgatcaagatttgattacaaacta Alignment from Exonerate_protein2genome GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tactctaattttgttttatcccatattattgccccgtccaatctttccagGTGGTCGAGAAGTATTCAAAGAGAGAAGTAGAGATTCAGCAATTGACTGAGGAACTGCAAGGTAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtaaggaataagcttttccagtgtcatgatcaagatttgattacaaacta Alignment from Exonerate_coding2genome GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tactctaattttgttttatcccatattattgccccgtccaatctttccagGTGGTCGAGAAGTATTCAAAGAGAGAAGTAGAGATTCAGCAATTGACTGAGGAACTGCAAGGTAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtaaggaataagcttttccagtgtcatgatcaagatttgattacaaacta Alignment from GeneWise GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tactctaattttgttttatcccatattattgccccgtccaatctttccagGTGGTCGAGAAGTATTCAAAGAGAGAAGTAGAGATTCAGCAATTGACTGAGGAACTGCAAGGTAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtaaggaataagcttttccagtgtcatgatcaagatttgattacaaacta #### Smc5_ID5113_20 --> 0 - 0 Original Alignment GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG cacactggtacgctcatcacttactgttacgttgagattttgttttccagGCATTTGAAGACCTCCCAAACACATTGGATGAAATTGATGCATTATTAACTGCAGAAAGATCAAGAGCTTCATGCTTCACAGGATTAAATCCTTCAgttggtctccatatttttgctatttaccctatttccacatgactgttttc Alignment from CESAR GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG cacactggtacgctcatcacttactgttacgttgagattttgttttccagGCATTTGAAGACCTCCCAAACACATTGGATGAAATTGATGCATTATTAACTGCAGAAAGATCAAGAGCTTCATGCTTCACAGGATTAAATCCTTCAgttggtctccatatttttgctatttaccctatttccacatgactgttttc Alignment from Spaln_aa2Genome GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG cacactggtacgctcatcacttactgttacgttgagattttgttttccagGCATTTGAAGACCTCCCAAACACATTGGATGAAATTGATGCATTATTAACTGCAGAAAGATCAAGAGCTTCATGCTTCACAGGATTAAATCCTTCAgttggtctccatatttttgctatttaccctatttccacatgactgttttc Alignment from Spaln_nt2Genome GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG cacactggtacgctcatcacttactgttacgttgagattttgttttccagGCATTTGAAGACCTCCCAAACACATTGGATGAAATTGATGCATTATTAACTGCAGAAAGATCAAGAGCTTCATGCTTCACAGGATTAAATCCTTCAgttggtctccatatttttgctatttaccctatttccacatgactgttttc Alignment from Pairagon GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG cacactggtacgctcatcacttactgttacgttgagattttgttttccagGCATTTGAAGACCTCCCAAACACATTGGATGAAATTGATGCATTATTAACTGCAGAAAGATCAAGAGCTTCATGCTTCACAGGATTAAATCCTTCAgttggtctccatatttttgctatttaccctatttccacatgactgttttc Alignment from Exonerate_protein2genome GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG cacactggtacgctcatcacttactgttacgttgagattttgttttccagGCATTTGAAGACCTCCCAAACACATTGGATGAAATTGATGCATTATTAACTGCAGAAAGATCAAGAGCTTCATGCTTCACAGGATTAAATCCTTCAgttggtctccatatttttgctatttaccctatttccacatgactgttttc Alignment from Exonerate_coding2genome GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG cacactggtacgctcatcacttactgttacgttgagattttgttttccagGCATTTGAAGACCTCCCAAACACATTGGATGAAATTGATGCATTATTAACTGCAGAAAGATCAAGAGCTTCATGCTTCACAGGATTAAATCCTTCAgttggtctccatatttttgctatttaccctatttccacatgactgttttc Alignment from GeneWise GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG cacactggtacgctcatcacttactgttacgttgagattttgttttccagGCATTTGAAGACCTCCCAAACACATTGGATGAAATTGATGCATTATTAACTGCAGAAAGATCAAGAGCTTCATGCTTCACAGGATTAAATCCTTCAgttggtctccatatttttgctatttaccctatttccacatgactgttttc #### Smc5_ID5116_17 --> 0 - 0 Original Alignment ATATGCACTTCTTTTCAAATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTGATCTCTGAGAAGAACAAGTTAGAAGCAGATTACATGGCGTCATCTTCCCAGCTGCGCGTCACAGAA attccaaataataaccataatttcacggtcgaatccctactttgttgtagATATGCACTTCTTTTCAGATTCAAAAAGTTGATTTGATCCTTCAAAATACTACAGTGATCTCTGAGAAGAATAAGTTAGAAGCAGATGATATGGCATCATCCTCCCAGTTGCGTGTCACAGAAgtaagtgttattcgtttaagattgatctgctccccacaacacatcatcta Alignment from CESAR ATATGCACTTCTTTTCAAATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTGATCTCTGAGAAGAACAAGTTAGAAGCAGATTACATGGCGTCATCTTCCCAGCTGCGCGTCACAGAA attccaaataataaccataatttcacggtcgaatccctactttgttgtagATATGCACTTCTTTTCAGATTCAAAAAGTTGATTTGATCCTTCAAAATACTACAGTGATCTCTGAGAAGAATAAGTTAGAAGCAGATGATATGGCATCATCCTCCCAGTTGCGTGTCACAGAAgtaagtgttattcgtttaagattgatctgctccccacaacacatcatcta Alignment from Spaln_aa2Genome ATATGCACTTCTTTTCAAATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTGATCTCTGAGAAGAACAAGTTAGAAGCAGATTACATGGCGTCATCTTCCCAGCTGCGCGTCACAGAA attccaaataataaccataatttcacggtcgaatccctactttgttgtagATATGCACTTCTTTTCAGATTCAAAAAGTTGATTTGATCCTTCAAAATACTACAGTGATCTCTGAGAAGAATAAGTTAGAAGCAGATGATATGGCATCATCCTCCCAGTTGCGTGTCACAGAAgtaagtgttattcgtttaagattgatctgctccccacaacacatcatcta Alignment from Spaln_nt2Genome ATATGCACTTCTTTTCAAATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTGATCTCTGAGAAGAACAAGTTAGAAGCAGATTACATGGCGTCATCTTCCCAGCTGCGCGTCACAGAA attccaaataataaccataatttcacggtcgaatccctactttgttgtagATATGCACTTCTTTTCAGATTCAAAAAGTTGATTTGATCCTTCAAAATACTACAGTGATCTCTGAGAAGAATAAGTTAGAAGCAGATGATATGGCATCATCCTCCCAGTTGCGTGTCACAGAAgtaagtgttattcgtttaagattgatctgctccccacaacacatcatcta Alignment from Pairagon ATATGCACTTCTTTTCAAATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTGATCTCTGAGAAGAACAAGTTAGAAGCAGATTACATGGCGTCATCTTCCCAGCTGCGCGTCACAGAA attccaaataataaccataatttcacggtcgaatccctactttgttgtagATATGCACTTCTTTTCAGATTCAAAAAGTTGATTTGATCCTTCAAAATACTACAGTGATCTCTGAGAAGAATAAGTTAGAAGCAGATGATATGGCATCATCCTCCCAGTTGCGTGTCACAGAAgtaagtgttattcgtttaagattgatctgctccccacaacacatcatcta Alignment from Exonerate_protein2genome ATATGCACTTCTTTTCAAATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTGATCTCTGAGAAGAACAAGTTAGAAGCAGATTACATGGCGTCATCTTCCCAGCTGCGCGTCACAGAA attccaaataataaccataatttcacggtcgaatccctactttgttgtagATATGCACTTCTTTTCAGATTCAAAAAGTTGATTTGATCCTTCAAAATACTACAGTGATCTCTGAGAAGAATAAGTTAGAAGCAGATGATATGGCATCATCCTCCCAGTTGCGTGTCACAGAAgtaagtgttattcgtttaagattgatctgctccccacaacacatcatcta Alignment from Exonerate_coding2genome ATATGCACTTCTTTTCAAATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTGATCTCTGAGAAGAACAAGTTAGAAGCAGATTACATGGCGTCATCTTCCCAGCTGCGCGTCACAGAA attccaaataataaccataatttcacggtcgaatccctactttgttgtagATATGCACTTCTTTTCAGATTCAAAAAGTTGATTTGATCCTTCAAAATACTACAGTGATCTCTGAGAAGAATAAGTTAGAAGCAGATGATATGGCATCATCCTCCCAGTTGCGTGTCACAGAAgtaagtgttattcgtttaagattgatctgctccccacaacacatcatcta Alignment from GeneWise ATATGCACTTCTTTTCAAATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTGATCTCTGAGAAGAACAAGTTAGAAGCAGATTACATGGCGTCATCTTCCCAGCTGCGCGTCACAGAA attccaaataataaccataatttcacggtcgaatccctactttgttgtagATATGCACTTCTTTTCAGATTCAAAAAGTTGATTTGATCCTTCAAAATACTACAGTGATCTCTGAGAAGAATAAGTTAGAAGCAGATGATATGGCATCATCCTCCCAGTTGCGTGTCACAGAAgtaagtgttattcgtttaagattgatctgctccccacaacacatcatcta #### Smc5_ID5122_11 --> 0 - 0 Original Alignment ATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAG agaaagtacctttcaaggaaagtagctaactgacttctttttcccccaagATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTCAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAGgtaaggaccaactatgttgataatcaattgattcaccaccttccccccct Alignment from CESAR ATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAG agaaagtacctttcaaggaaagtagctaactgacttctttttcccccaagATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTCAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAGgtaaggaccaactatgttgataatcaattgattcaccaccttccccccct Alignment from Spaln_aa2Genome ATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAG agaaagtacctttcaaggaaagtagctaactgacttctttttcccccaagATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTCAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAGgtaaggaccaactatgttgataatcaattgattcaccaccttccccccct Alignment from Spaln_nt2Genome ATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAG agaaagtacctttcaaggaaagtagctaactgacttctttttcccccaagATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTCAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAGgtaaggaccaactatgttgataatcaattgattcaccaccttccccccct Alignment from Pairagon ATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAG agaaagtacctttcaaggaaagtagctaactgacttctttttcccccaagATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTCAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAGgtaaggaccaactatgttgataatcaattgattcaccaccttccccccct Alignment from Exonerate_protein2genome ATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAG agaaagtacctttcaaggaaagtagctaactgacttctttttcccccaagATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTCAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAGgtaaggaccaactatgttgataatcaattgattcaccaccttccccccct Alignment from Exonerate_coding2genome ATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAG agaaagtacctttcaaggaaagtagctaactgacttctttttcccccaagATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTCAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAGgtaaggaccaactatgttgataatcaattgattcaccaccttccccccct Alignment from GeneWise ATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAG agaaagtacctttcaaggaaagtagctaactgacttctttttcccccaagATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTCAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAGgtaaggaccaactatgttgataatcaattgattcaccaccttccccccct #### Smc5_ID5123_10 --> 2 - 0 Original Alignment gtGTGAGTGATCATATTACACGGTTTGACAATCTTATGAATCAGAAGGAAGATAAGCTGAGACAGCGGTACCGGGATACGTATGATGCAGTCTTGTGGCTGAGAAATAACAGAGACAGGTTTAAACAAAGAGTCTGTGAACCCATAATGCTCACG gcatactgcaatgtctaggacatactgaaatttttttctttaactttcaggtGTGAGTGATCATATTACACGATTTGACAATCTAAAGAATCAGAAGGAAGATAAACTAAGACAGCGGTACCGGGATACATATGATGCAGTTCTGTGGCTGAGAAATAACAGAGACAGGTTCAAACAAAGAGTCTGTGAACCCATAATGCTCACAgtgaggaactatgctcatagcatatgtactcaaccatatttctgccctat Alignment from CESAR gtGTGAGTGATCATATTACACGGTTTGACAATCTTATGAATCAGAAGGAAGATAAGCTGAGACAGCGGTACCGGGATACGTATGATGCAGTCTTGTGGCTGAGAAATAACAGAGACAGGTTTAAACAAAGAGTCTGTGAACCCATAATGCTCACG gcatactgcaatgtctaggacatactgaaatttttttctttaactttcaggtGTGAGTGATCATATTACACGATTTGACAATCTAAAGAATCAGAAGGAAGATAAACTAAGACAGCGGTACCGGGATACATATGATGCAGTTCTGTGGCTGAGAAATAACAGAGACAGGTTCAAACAAAGAGTCTGTGAACCCATAATGCTCACAgtgaggaactatgctcatagcatatgtactcaaccatatttctgccctat Alignment from Spaln_aa2Genome GTGTGAGTGATCATATTACACGGTTTGACAATCTTATGAATCAGAAGGAAGATAAGCTGAGACAGCGGTACCGGGATACGTATGATGCAGTCTTGTGGCTGAGAAATAACAGAGACAGGTTTAAACAAAGAGTCTGTGAACCCATAATGCTCACG gcatactgcaatgtctaggacatactgaaatttttttctttaactttcagGTGTGAGTGATCATATTACACGATTTGACAATCTAAAGAATCAGAAGGAAGATAAACTAAGACAGCGGTACCGGGATACATATGATGCAGTTCTGTGGCTGAGAAATAACAGAGACAGGTTCAAACAAAGAGTCTGTGAACCCATAATGCTCACAgtgaggaactatgctcatagcatatgtactcaaccatatttctgccctat Alignment from Spaln_nt2Genome GTGTGAGTGATCATATTACACGGTTTGACAATCTTATGAATCAGAAGGAAGATAAGCTGAGACAGCGGTACCGGGATACGTATGATGCAGTCTTGTGGCTGAGAAATAACAGAGACAGGTTTAAACAAAGAGTCTGTGAACCCATAATGCTCACG gcatactgcaatgtctaggacatactgaaatttttttctttaactttcagGTGTGAGTGATCATATTACACGATTTGACAATCTAAAGAATCAGAAGGAAGATAAACTAAGACAGCGGTACCGGGATACATATGATGCAGTTCTGTGGCTGAGAAATAACAGAGACAGGTTCAAACAAAGAGTCTGTGAACCCATAATGCTCACAgtgaggaactatgctcatagcatatgtactcaaccatatttctgccctat Alignment from Pairagon GTGTGAGTGATCATATTACACGGTTTGACAATCTTATGAATCAGAAGGAAGATAAGCTGAGACAGCGGTACCGGGATACGTATGATGCAGTCTTGTGGCTGAGAAATAACAGAGACAGGTTTAAACAAAGAGTCTGTGAACCCATAATGCTCACG gcatactgcaatgtctaggacatactgaaatttttttctttaactttcagGTGTGAGTGATCATATTACACGATTTGACAATCTAAAGAATCAGAAGGAAGATAAACTAAGACAGCGGTACCGGGATACATATGATGCAGTTCTGTGGCTGAGAAATAACAGAGACAGGTTCAAACAAAGAGTCTGTGAACCCATAATGCTCACAgtgaggaactatgctcatagcatatgtactcaaccatatttctgccctat Alignment from Exonerate_protein2genome GTGTGAGTGATCATATTACACGGTTTGACAATCTTATGAATCAGAAGGAAGATAAGCTGAGACAGCGGTACCGGGATACGTATGATGCAGTCTTGTGGCTGAGAAATAACAGAGACAGGTTTAAACAAAGAGTCTGTGAACCCATAATGCTCACG gcatactgcaatgtctaggacatactgaaatttttttctttaactttcagGTGTGAGTGATCATATTACACGATTTGACAATCTAAAGAATCAGAAGGAAGATAAACTAAGACAGCGGTACCGGGATACATATGATGCAGTTCTGTGGCTGAGAAATAACAGAGACAGGTTCAAACAAAGAGTCTGTGAACCCATAATGCTCACAgtgaggaactatgctcatagcatatgtactcaaccatatttctgccctat Alignment from Exonerate_coding2genome GTGTGAGTGATCATATTACACGGTTTGACAATCTTATGAATCAGAAGGAAGATAAGCTGAGACAGCGGTACCGGGATACGTATGATGCAGTCTTGTGGCTGAGAAATAACAGAGACAGGTTTAAACAAAGAGTCTGTGAACCCATAATGCTCACG gcatactgcaatgtctaggacatactgaaatttttttctttaactttcagGTGTGAGTGATCATATTACACGATTTGACAATCTAAAGAATCAGAAGGAAGATAAACTAAGACAGCGGTACCGGGATACATATGATGCAGTTCTGTGGCTGAGAAATAACAGAGACAGGTTCAAACAAAGAGTCTGTGAACCCATAATGCTCACAgtgaggaactatgctcatagcatatgtactcaaccatatttctgccctat Alignment from GeneWise GTGTGAGTGATCATATTACACGGTTTGACAATCTTATGAATCAGAAGGAAGATAAGCTGAGACAGCGGTACCGGGATACGTATGATGCAGTCTTGTGGCTGAGAAATAACAGAGACAGGTTTAAACAAAGAGTCTGTGAACCCATAATGCTCACG gcatactgcaatgtctaggacatactgaaatttttttctttaactttcagGTGTGAGTGATCATATTACACGATTTGACAATCTAAAGAATCAGAAGGAAGATAAACTAAGACAGCGGTACCGGGATACATATGATGCAGTTCTGTGGCTGAGAAATAACAGAGACAGGTTCAAACAAAGAGTCTGTGAACCCATAATGCTCACAgtgaggaactatgctcatagcatatgtactcaaccatatttctgccctat #### Smc5_ID5124_9 --> 0 - 1 Original Alignment ATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCGTCACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGATAAACAGCGAGAAAAGGAAATGCTGGAGAAGCAGAGACGGa cttgattctggtcaaaactgttgtctggttgcaccctctgccttttctagATTAAGGAACTTCAGCAGGCATTGACAGTTAAACAGAATGAAGAGTTGGACCGACAGAAGAGAATAGGTAACACATGCAAGATGATAGAGGATCTTCAAAGTGAGCTCAAAACTGCAGAGAACTGTGAGAACCCTCAGCCTCAGATTGACACAATCACAAATGATCAAAGGCAAGTGCAGGAGGTGAAGGCCCTATGCGAAGGTGAGATCCTCGACAAACAGAGAGAAAAGGAAATGCTGGAAATACACAGGCGTagtgagcttgaggtgaagtaatcagacacagttgggtactgggacgtcttt Alignment from CESAR ATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCGTCACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGATAAACAGCGAGAAAAGGAAATGCTGGAGAAGCAGAGACGGa cttgattctggtcaaaactgttgtctggttgcaccctctgccttttctagATTAAGGAACTTCAGCAGGCATTGACAGTTAAACAGAATGAAGAGTTGGACCGACAGAAGAGAATAGGTAACACATGCAAGATGATAGAGGATCTTCAAAGTGAGCTCAAAACTGCAGAGAACTGTGAGAACCCTCAGCCTCAGATTGACACAATCACAAATGATCAAAGGCAAGTGCAGGAGGTGAAGGCCCTATGCGAAGGTGAGATCCTCGACAAACAGAGAGAAAAGGAAATGCTGGAAATACACAGGCGTagtgagcttgaggtgaagtaatcagacacagttgggtactgggacgtcttt Alignment from Spaln_aa2Genome ATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCGTCACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGATAAACAGCGAGAAAAGGAAATGCTGGAGAAGCAGAGACGGA cttgattctggtcaaaactgttgtctggttgcaccctctgccttttctagATTAAGGAACTTCAGCAGGCATTGACAGTTAAACAGAATGAAGAGTTGGACCGACAGAAGAGAATAGGTAACACATGCAAGATGATAGAGGATCTTCAAAGTGAGCTCAAAACTGCAGAGAACTGTGAGAACCCTCAGCCTCAGATTGACACAATCACAAATGATCAAAGGCAAGTGCAGGAGGTGAAGGCCCTATGCGAAGGTGAGATCCTCGACAAACAGAGAGAAAAGGAAATGCTGGAAATACACAGGCGTAgtgagcttgaggtgaagtaatcagacacagttgggtactgggacgtcttt Alignment from Spaln_nt2Genome ATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCGTCACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGATAAACAGCGAGAAAAGGAAATGCTGGAGAAGCAGAGACGGA cttgattctggtcaaaactgttgtctggttgcaccctctgccttttctagATTAAGGAACTTCAGCAGGCATTGACAGTTAAACAGAATGAAGAGTTGGACCGACAGAAGAGAATAGGTAACACATGCAAGATGATAGAGGATCTTCAAAGTGAGCTCAAAACTGCAGAGAACTGTGAGAACCCTCAGCCTCAGATTGACACAATCACAAATGATCAAAGGCAAGTGCAGGAGGTGAAGGCCCTATGCGAAGGTGAGATCCTCGACAAACAGAGAGAAAAGGAAATGCTGGAAATACACAGGCGTAgtgagcttgaggtgaagtaatcagacacagttgggtactgggacgtcttt Alignment from Pairagon ATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCGTCACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGATAAACAGCGAGAAAAGGAAATGCTGGAGAAGCAGAGACGGA cttgattctggtcaaaactgttgtctggttgcaccctctgccttttctagATTAAGGAACTTCAGCAGGCATTGACAGTTAAACAGAATGAAGAGTTGGACCGACAGAAGAGAATAGGTAACACATGCAAGATGATAGAGGATCTTCAAAGTGAGCTCAAAACTGCAGAGAACTGTGAGAACCCTCAGCCTCAGATTGACACAATCACAAATGATCAAAGGCAAGTGCAGGAGGTGAAGGCCCTATGCGAAGGTGAGATCCTCGACAAACAGAGAGAAAAGGAAATGCTGGAAATACACAGGCGTAgtgagcttgaggtgaagtaatcagacacagttgggtactgggacgtcttt Alignment from Exonerate_protein2genome ATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCGTCACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGATAAACAGCGAGAAAAGGAAATGCTGGAGAAGCAGAGACGGA cttgattctggtcaaaactgttgtctggttgcaccctctgccttttctagATTAAGGAACTTCAGCAGGCATTGACAGTTAAACAGAATGAAGAGTTGGACCGACAGAAGAGAATAGGTAACACATGCAAGATGATAGAGGATCTTCAAAGTGAGCTCAAAACTGCAGAGAACTGTGAGAACCCTCAGCCTCAGATTGACACAATCACAAATGATCAAAGGCAAGTGCAGGAGGTGAAGGCCCTATGCGAAGGTGAGATCCTCGACAAACAGAGAGAAAAGGAAATGCTGGAAATACACAGGCGTAgtgagcttgaggtgaagtaatcagacacagttgggtactgggacgtcttt Alignment from Exonerate_coding2genome ATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCGTCACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGATAAACAGCGAGAAAAGGAAATGCTGGAGAAGCAGAGACGGA cttgattctggtcaaaactgttgtctggttgcaccctctgccttttctagATTAAGGAACTTCAGCAGGCATTGACAGTTAAACAGAATGAAGAGTTGGACCGACAGAAGAGAATAGGTAACACATGCAAGATGATAGAGGATCTTCAAAGTGAGCTCAAAACTGCAGAGAACTGTGAGAACCCTCAGCCTCAGATTGACACAATCACAAATGATCAAAGGCAAGTGCAGGAGGTGAAGGCCCTATGCGAAGGTGAGATCCTCGACAAACAGAGAGAAAAGGAAATGCTGGAAATACACAGGCGTAgtgagcttgaggtgaagtaatcagacacagttgggtactgggacgtcttt Alignment from GeneWise ATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCGTCACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGATAAACAGCGAGAAAAGGAAATGCTGGAGAAGCAGAGACGGA cttgattctggtcaaaactgttgtctggttgcaccctctgccttttctagATTAAGGAACTTCAGCAGGCATTGACAGTTAAACAGAATGAAGAGTTGGACCGACAGAAGAGAATAGGTAACACATGCAAGATGATAGAGGATCTTCAAAGTGAGCTCAAAACTGCAGAGAACTGTGAGAACCCTCAGCCTCAGATTGACACAATCACAAATGATCAAAGGCAAGTGCAGGAGGTGAAGGCCCTATGCGAAGGTGAGATCCTCGACAAACAGAGAGAAAAGGAAATGCTGGAAATACACAGGCGTAgtgagcttgaggtgaagtaatcagacacagttgggtactgggacgtcttt #### Smc5_ID5127_6 --> 0 - 0 Original Alignment ACCTCTTGCAAAGAGAAAACTGAATACCTAGAGAAAATGGTTCAGAGAAATGAAAGGTACAAACAAGATGTGGAAAGATTCTATGAACGAAAACGACATTTAGATTTAATTGAGATGCTTGAGGCCAAAAGACCATGGGTG gccatgtaccctttttacacaaggtaatgtataatggacttctttttcagACCTCTTGCAAGGAGAAA---GAATATCTAGAAAAAATGGTTCACAAGAATGAAAGGTACAAACAGGATGTGGAGCGGTTTTATGAGCGGAAGCGACATTTAGATTTAATTGAAATGCTTGAGGCCAAAAGACCATGGGTAgtgagtttgatttagtagttttttctccgcatttaggaagtaatggcttt Alignment from CESAR ACCTCTTGCAAAGAGAAAACTGAATACCTAGAGAAAATGGTTCAGAGAAATGAAAGGTACAAACAAGATGTGGAAAGATTCTATGAACGAAAACGACATTTAGATTTAATTGAGATGCTTGAGGCCAAAAGACCATGGGTG gccatgtaccctttttacacaaggtaatgtataatggacttctttttcagACCTCTTGCAAGGAGAAA---GAATATCTAGAAAAAATGGTTCACAAGAATGAAAGGTACAAACAGGATGTGGAGCGGTTTTATGAGCGGAAGCGACATTTAGATTTAATTGAAATGCTTGAGGCCAAAAGACCATGGGTAgtgagtttgatttagtagttttttctccgcatttaggaagtaatggcttt Alignment from Spaln_aa2Genome ACCTCTTGCAAAGAGAAAACTGAATACCTAGAGAAAATGGTTCAGAGAAATGAAAGGTACAAACAAGATGTGGAAAGATTCTATGAACGAAAACGACATTTAGATTTAATTGAGATGCTTGAGGCCAAAAGACCATGGGTG gccatgtaccctttttacacaaggtaatgtataatggacttctttttcagACCTCTTGCAAGGAGAAA---GAATATCTAGAAAAAATGGTTCACAAGAATGAAAGGTACAAACAGGATGTGGAGCGGTTTTATGAGCGGAAGCGACATTTAGATTTAATTGAAATGCTTGAGGCCAAAAGACCATGGGTAgtgagtttgatttagtagttttttctccgcatttaggaagtaatggcttt Alignment from Spaln_nt2Genome ACCTCTTGCAAAGAGAAAACTGAATACCTAGAGAAAATGGTTCAGAGAAATGAAAGGTACAAACAAGATGTGGAAAGATTCTATGAACGAAAACGACATTTAGATTTAATTGAGATGCTTGAGGCCAAAAGACCATGGGTG gccatgtaccctttttacacaaggtaatgtataatggacttctttttcagACCTCTTGCAAGGAGAAA---GAATATCTAGAAAAAATGGTTCACAAGAATGAAAGGTACAAACAGGATGTGGAGCGGTTTTATGAGCGGAAGCGACATTTAGATTTAATTGAAATGCTTGAGGCCAAAAGACCATGGGTAgtgagtttgatttagtagttttttctccgcatttaggaagtaatggcttt Alignment from Pairagon ACCTCTTGCAAAGAGAAAACTGAATACCTAGAGAAAATGGTTCAGAGAAATGAAAGGTACAAACAAGATGTGGAAAGATTCTATGAACGAAAACGACATTTAGATTTAATTGAGATGCTTGAGGCCAAAAGACCATGGGTG gccatgtaccctttttacacaaggtaatgtataatggacttctttttcagACCTCTTGCAAGGAGAAA---GAATATCTAGAAAAAATGGTTCACAAGAATGAAAGGTACAAACAGGATGTGGAGCGGTTTTATGAGCGGAAGCGACATTTAGATTTAATTGAAATGCTTGAGGCCAAAAGACCATGGGTAgtgagtttgatttagtagttttttctccgcatttaggaagtaatggcttt Alignment from Exonerate_protein2genome AACTTCAGGGAGAAGGAGAAGCAGCTAGAGACCTCTTGCAAAGAGAAAACTGAATACCTAGAGAAAATGGTTCAGAGAAATGAAAGGTACAAACAAGATGTGGAAAGATTCTATGAACGAAAACGACATTTAGATTTAATTGAGATGCTTGAGGCCAAAAGACCATGGGTG gccatgtaccctttttacacAAGGTAATGTATAATGGACTTCTTTTTCAGACCTCTTGCAAGGAGAAA---GAATATCTAGAAAAAATGGTTCACAAGAATGAAAGGTACAAACAGGATGTGGAGCGGTTTTATGAGCGGAAGCGACATTTAGATTTAATTGAAATGCTTGAGGCCAAAAGACCATGGGTAgtgagtttgatttagtagttttttctccgcatttaggaagtaatggcttt Alignment from Exonerate_coding2genome AACTTCAGGGAGAAGGAGAAGCAGCTAGAGACCTCTTGCAAAGAGAAAACTGAATACCTAGAGAAAATGGTTCAGAGAAATGAAAGGTACAAACAAGATGTGGAAAGATTCTATGAACGAAAACGACATTTAGATTTAATTGAGATGCTTGAGGCCAAAAGACCATGGGTG gccatgtaccctttttacacAAGGTAATGTATAATGGACTTCTTTTTCAGACCTCTTGCAAGGAGAAA---GAATATCTAGAAAAAATGGTTCACAAGAATGAAAGGTACAAACAGGATGTGGAGCGGTTTTATGAGCGGAAGCGACATTTAGATTTAATTGAAATGCTTGAGGCCAAAAGACCATGGGTAgtgagtttgatttagtagttttttctccgcatttaggaagtaatggcttt Alignment from GeneWise ACCTCTTGCAAAGAGAAAACTGAATACCTAGAGAAAATGGTTCAGAGAAATGAAAGGTACAAACAAGATGTGGAAAGATTCTATGAACGAAAACGACATTTAGATTTAATTGAGATGCTTGAGGCCAAAAGACCATGGGTG gccatgtaccctttttacacaaggtaatgtataatggacttctttttcagACCTCTTGCAAGGAGAAA---GAATATCTAGAAAAAATGGTTCACAAGAATGAAAGGTACAAACAGGATGTGGAGCGGTTTTATGAGCGGAAGCGACATTTAGATTTAATTGAAATGCTTGAGGCCAAAAGACCATGGGTAgtgagtttgatttagtagttttttctccgcatttaggaagtaatggcttt #### Smc5_ID5129_5 --> 0 - 0 Original Alignment GACAAAGTTGGGGAATTTGCTAAACTCAGCAAAATTGAACTCCTTGAAGCTACTGAGAAGTCAGTTGGTCCTCCA---------GAGATGCACAGATACCACTGTGAACTCAAAAACTTCAGGGAGAAGGAGAAGCAGCTAGAG gaatctcgtctattactaatacttgcttgttgttcttttacttctttcagGACCAGGTTGGAGAATTTGCTAAACTTAGC---ATTGAACTCCTGGAAGCTACTGAGAAGTCAGTTACACCACCAGCTCCTCCAGAGATACATAGATACCACTGTGAACTCAAT---TTCAGGGAG------------CTCGAGgtgagttagaacaacaatgattatcttcatgttcattaatcttaactaac Alignment from CESAR GACAAAGTTGGGGAATTTGCTAAACTCAGCAAAATTGAACTCCTTGAAGCTACTGAGAAGTCAGTT---------GGTCCTCCAGAGATGCACAGATACCACTGTGAACTCAAAAACTTCAGGGAGAAGGAGAAGCAGCTAGAG gaatctcgtctattactaatacttgcttgttgttcttttacttctttcagGACCAGGTTGGAGAATTTGCTAAACTTAGC---ATTGAACTCCTGGAAGCTACTGAGAAGTCAGTTACACCACCAGCTCCTCCAGAGATACATAGATACCACTGTGAACTC---AATTTCAGGGAG------------CTCGAGgtgagttagaacaacaatgattatcttcatgttcattaatcttaactaac Alignment from Spaln_aa2Genome GACAAAGTTGGGGAATTTGCTAAACTCAGCAAAATTGAACTCCTTGAAGCTACTGAGAAGTCAGTTGGT---------CCTCCAGAGATGCACAGATACCACTGTGAACTCAAAAACTTCAGGGAGAAGGAGAAGCAGCTAGAG gaatctcgtctattactaatacttgcttgttgttcttttacttctttcagGACCAGGTTGGAGAATTTGCTAAACTTAGC---ATTGAACTCCTGGAAGCTACTGAGAAGTCAGTTACACCACCAGCTCCTCCAGAGATACATAGATACCACTGTGAACTC---AATTTCAGGGAG------------CTCGAGgtgagttagaacaacaatgattatcttcatgttcattaatcttaactaac Alignment from Spaln_nt2Genome GACAAAGTTGGGGAATTTGCTAAACTCAGCAAAATTGAACTCCTTGAAGCTACTGAGAAGTCAGTT---------GGTCCTCCAGAGATGCACAGATACCACTGTGAACTCAAAAACTTCAGGGAGAAGGAG gaatctcgtctattactaatacttgcttgttgttcttttacttctttcagGACCAGGTTGGAGAATTTGCTAAACTTAGC---ATTGAACTCCTGGAAGCTACTGAGAAGTCAGTTACACCACCAGCTCCTCCAGAGATACATAGATACCACTGTGAACTC---AATTTCAGGGAGCTCGAGgtgagttagaacaacaatgattatcttcatgttcattaatcttaactaac Alignment from Pairagon GACAAAGTTGGGGAATTTGCTAAACTCAGCAAAATTGAACTCCTTGAAGCTACTGAGAAGTCAGTT---------GGTCCTCCAGAGATGCACAGATACCACTGTGAACTCAAAAACTTCAGGGAGAAGGAGAAGCAGCTAGAG gaatctcgtctattactaatacttgcttgttgttcttttacttctttcagGACCAGGTTGGAGAATTTGCTAAACTTAGC---ATTGAACTCCTGGAAGCTACTGAGAAGTCAGTTACACCACCAGCTCCTCCAGAGATACATAGATACCACTGTGAACTC---AATTTCAGGG------------AGCTCGAGgtgagttagaacaacaatgattatcttcatgttcattaatcttaactaac Alignment from Exonerate_protein2genome GACAAAGTTGGGGAATTTGCTAAACTCAGCAAAATTGAACTCCTTGAAGCTACTGAGAAGTCAGTT---------GGTCCTCCAGAGATGCACAGATACCACTGTGAACTCAAAAACTTCAGGGAGAAGGAG gaatctcgtctattactaatacttgcttgttgttcttttacttctttcagGACCAGGTTGGAGAATTTGCTAAACTTAGC---ATTGAACTCCTGGAAGCTACTGAGAAGTCAGTTACACCACCAGCTCCTCCAGAGATACATAGATACCACTGTGAACTC---AATTTCAGGGAGCTCGAGgtgagttagaacaacaatgattatcttcatgttcattaatcttaactaac Alignment from Exonerate_coding2genome GACAAAGTTGGGGAATTTGCTAAACTCAGCAAAATTGAACTCCTTGAAGCTACTGAGAAGTCAGTT---------GGTCCTCCAGAGATGCACAGATACCACTGTGAACTCAAAAACTTCAGGGAGAAGGAG gaatctcgtctattactaatacttgcttgttgttcttttacttctttcagGACCAGGTTGGAGAATTTGCTAAACTTAGC---ATTGAACTCCTGGAAGCTACTGAGAAGTCAGTTACACCACCAGCTCCTCCAGAGATACATAGATACCACTGTGAACTC---AATTTCAGGGAGCTCGAGgtgagttagaacaacaatgattatcttcatgttcattaatcttaactaac Alignment from GeneWise GACAAAGTTGGGGAATTTGCTAAACTCAGCAAAATTGAACTCCTTGAAGCTACTGAGAAGTCAGTT---------GGTCCTCCAGAGATGCACAGATACCACTGTGAACTCAAAAACTTCAGGGAGAAGGAGAAGCAGCTAGAG gaatctcgtctattactaatacttgcttgttgttcttttacttctttcagGACCAGGTTGGAGAATTTGCTAAACTTAGC---ATTGAACTCCTGGAAGCTACTGAGAAGTCAGTTACACCACCAGCTCCTCCAGAGATACATAGATACCACTGTGAACTC---AATTTCAGGGAG------------CTCGAGgtgagttagaacaacaatgattatcttcatgttcattaatcttaactaac #### Snx32_ID1066_12 --> 2 - 0 Original Alignment agCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG taagacctgaaggattgcaacaatcaattgtccatttctgtttgccatagaaCTCATGGACTTCAAATCTCACAGGGTCTCCTCTTTCCGTAAGAACCTCATTGAGTTGACTGAGCTGGAGCTCAAGCAGGCCAAGgtaagttgttacttcagctacatcacaaagaacttactacccagtctgga Alignment from CESAR agCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG tgaggcctgaaggattgcaacaatcaattgtccatttctgtttgccatagaaCTCATGGACTTCAAATCTCACAGGGTCTCCTCTTTCCGTAAGAACCTCATTGAGTTGACTGAGCTGGAGCTCAAGCAGGCCAAGgtaagttgttacttcagctacatcacaaagaacttactacccagtctgga Alignment from Spaln_aa2Genome AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG taagacctgaaggattgcaacaatcaattgtccatttctgtttgccatagAACTCATGGACTTCAAATCTCACAGGGTCTCCTCTTTCCGTAAGAACCTCATTGAGTTGACTGAGCTGGAGCTCAAGCAGGCCAAGgtaagttgttacttcagctacatcacaaagaacttactacccagtctgga Alignment from Spaln_nt2Genome AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG taagacctgaaggattgcaacaatcaattgtccatttctgtttgccatagAACTCATGGACTTCAAATCTCACAGGGTCTCCTCTTTCCGTAAGAACCTCATTGAGTTGACTGAGCTGGAGCTCAAGCAGGCCAAGgtaagttgttacttcagctacatcacaaagaacttactacccagtctgga Alignment from Pairagon AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG taagacctgaaggattgcaacaatcaattgtccatttctgtttgccatagAACTCATGGACTTCAAATCTCACAGGGTCTCCTCTTTCCGTAAGAACCTCATTGAGTTGACTGAGCTGGAGCTCAAGCAGGCCAAGgtaagttgttacttcagctacatcacaaagaacttactacccagtctgga Alignment from Exonerate_protein2genome AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG taagacctgaaggattgcaacaatcaattgtccatttctgtttgccatagAACTCATGGACTTCAAATCTCACAGGGTCTCCTCTTTCCGTAAGAACCTCATTGAGTTGACTGAGCTGGAGCTCAAGCAGGCCAAGgtaagttgttacttcagctacatcacaaagaacttactacccagtctgga Alignment from Exonerate_coding2genome AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG taagacctgaaggattgcaacaatcaattgtccatttctgtttgccatagAACTCATGGACTTCAAATCTCACAGGGTCTCCTCTTTCCGTAAGAACCTCATTGAGTTGACTGAGCTGGAGCTCAAGCAGGCCAAGgtaagttgttacttcagctacatcacaaagaacttactacccagtctgga Alignment from GeneWise AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAGGCCAGCACCCTGCTTCTCCAGAACACCCTTGTTGCCCTTAAGGGAGAGCC taagacctgaaggattgcaacaatcaattgtccatttctgtttgccatagAACTCATGGACTTCAAATCTCACAGGGTCTCCTCTTTCCGTAAGAACCTCATTGAGTTGACTGAGCTGGAGCTCAAGCAGGCCAAGGTAAGTTGTTACTTCAGCTACATCACAAAGAACTTACTACCCAGTCTGGA #### Snx32_ID1067_11 --> 0 - 1 Original Alignment GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAg agtgataacacttccatgacataattgcaattggttttcttctcctctagGATCTATTGTACCGCCGGCTCCGGGCACTAGCTGAGTATGAGAATGCTAACAAAGCTCTTGATAAAGCCCGGACAAGGAACCATGAAGTATGGTCAGCAGAGAGCCACCAGCAACTGTGTTGCCAGCAGCAGTTTGACTGCCTCTCTGACTCTGCCAAACAAggtgaggcctgaaggattgcaacaatcaataattgctctccttcctttgca Alignment from CESAR GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAG---CGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAg agtgataacacttccatgacataattgcaattggttttcttctcctctagGATCTATTGTACCGCCGGCTCCGGGCACTAGCTGAGTATGAGAATGCTAACAAAGCTCTTGATAAAGCCCGGACAAGGAACCATGAAGTATGGTCAGCAGAGAGCCACCAGCAACTGTGTTGCCAGCAGCAGTTTGACTGCCTCTCTGACTCTGCCAAACAAggtgaggcctgaaggattgcaacaatcaattgtccatttctgtttgccata Alignment from Spaln_aa2Genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG agtgataacacttccatgacataattgcaattggttttcttctcctctagGATCTATTGTACCGCCGGCTCCGGGCACTAGCTGAGTATGAGAATGCTAACAAAGCTCTTGATAAAGCCCGGACAAGGAACCATGAAGTATGGTCAGCAGAGAGCCACCAGCAACTGTGTTGCCAGCAGCAGTTTGACTGCCTCTCTGACTCTGCCAAACAAGgtgaggcctgaaggattgcaacaatcaataattgctctccttcctttgca Alignment from Spaln_nt2Genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGC-GC--TTCGAGCGCCTCTCTGACTCCGCCAAACAAG agtgataacacttccatgacataattgcaattggttttcttctcctctagGATCTATTGTACCGCCGGCTCCGGGCACTAGCTGAGTATGAGAATGCTAACAAAGCTCTTGATAAAGCCCGGACAAGGAACCATGAAGTATGGTCAGCAGAGAGCCACCAGCAACTGTGTTGCCAGCAGCAGTTTGACTGCCTCTCTGACTCTGCCAAACAAGgtgaggcctgaaggattgcaacaatcaataattgctctccttcctttgca Alignment from Pairagon GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGCTTCGAGC---------GCCTCTCTGACTCCGCCAAACAAG agtgataacacttccatgacataattgcaattggttttcttctcctctagGATCTATTGTACCGCCGGCTCCGGGCACTAGCTGAGTATGAGAATGCTAACAAAGCTCTTGATAAAGCCCGGACAAGGAACCATGAAGTATGGTCAGCAGAGAGCCACCAGCAACTGTGTTGCCAGC------AGCAGTTTGACTGCCTCTCTGACTCTGCCAAACAAGgtgaggcctgaaggattgcaacaatcaataattgctctccttcctttgca Alignment from Exonerate_protein2genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG agtgataacacttccatgacataattgcaattggttttcttctcctctagGATCTATTGTACCGCCGGCTCCGGGCACTAGCTGAGTATGAGAATGCTAACAAAGCTCTTGATAAAGCCCGGACAAGGAACCATGAAGTATGGTCAGCAGAGAGCCACCAGCAACTGTGTTGCCAGCAGCAGTTTGACTGCCTCTCTGACTCTGCCAAACAAGgtgaggcctgaaggattgcaacaatcaataattgctctccttcctttgca Alignment from Exonerate_coding2genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG agtgataacacttccatgacataattgcaattggttttcttctcctctagGATCTATTGTACCGCCGGCTCCGGGCACTAGCTGAGTATGAGAATGCTAACAAAGCTCTTGATAAAGCCCGGACAAGGAACCATGAAGTATGGTCAGCAGAGAGCCACCAGCAACTGTGTTGCCAGCAGCAGTTTGACTGCCTCTCTGACTCTGCCAAACAAGgtgaggcctgaaggattgcaacaatcaataattgctctccttcctttgca Alignment from GeneWise GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGC---TTCGAGCGCCTCTCTGACTCCGCCAAACAAG agtgataacacttccatgacataattgcaattggttttcttctcctctagGATCTATTGTACCGCCGGCTCCGGGCACTAGCTGAGTATGAGAATGCTAACAAAGCTCTTGATAAAGCCCGGACAAGGAACCATGAAGTATGGTCAGCAGAGAGCCACCAGCAACTGTGTTGCCAGCAGCAGTTTGACTGCCTCTCTGACTCTGCCAAACAAGgtgaggcctgaaggattgcaacaatcaataattgctctccttcctttgca #### Snx32_ID1068_10 --> 0 - 0 Original Alignment AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAG gtctataccacaaaaaccaatcattatgtgcctgtggtttgtgttgacagAAGCTAGAAGGACAGGTAGCCTCTGATGAGGATCTGAGGCTGTCCGACACGCTGAGGTATTACATGCTAGATTCACAGGTAGCCAAGgtaacacacagcaatgctaacttaagtcctaagtaggtgtatagtgataa Alignment from CESAR AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAG gtctataccacaaaaaccaatcattatgtgcctgtggtttgtgttgacagAAGCTAGAAGGACAGGTAGCCTCTGATGAGGATCTGAGGCTGTCCGACACGCTGAGGTATTACATGCTAGATTCACAGGTAGCCAAGgtaacacacagcaatgctaacttaagtcctaagtaggtgtatagtgataa Alignment from Spaln_aa2Genome AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAG gtctataccacaaaaaccaatcattatgtgcctgtggtttgtgttgacagAAGCTAGAAGGACAGGTAGCCTCTGATGAGGATCTGAGGCTGTCCGACACGCTGAGGTATTACATGCTAGATTCACAGGTAGCCAAGgtaacacacagcaatgctaacttaagtcctaagtaggtgtatagtgataa Alignment from Spaln_nt2Genome AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAG gtctataccacaaaaaccaatcattatgtgcctgtggtttgtgttgacagAAGCTAGAAGGACAGGTAGCCTCTGATGAGGATCTGAGGCTGTCCGACACGCTGAGGTATTACATGCTAGATTCACAGGTAGCCAAGgtaacacacagcaatgctaacttaagtcctaagtaggtgtatagtgataa Alignment from Pairagon AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAG gtctataccacaaaaaccaatcattatgtgcctgtggtttgtgttgacagAAGCTAGAAGGACAGGTAGCCTCTGATGAGGATCTGAGGCTGTCCGACACGCTGAGGTATTACATGCTAGATTCACAGGTAGCCAAGgtaacacacagcaatgctaacttaagtcctaagtaggtgtatagtgataa Alignment from Exonerate_protein2genome AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAG gtctataccacaaaaaccaatcattatgtgcctgtggtttgtgttgacagAAGCTAGAAGGACAGGTAGCCTCTGATGAGGATCTGAGGCTGTCCGACACGCTGAGGTATTACATGCTAGATTCACAGGTAGCCAAGgtaacacacagcaatgctaacttaagtcctaagtaggtgtatagtgataa Alignment from Exonerate_coding2genome AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAG gtctataccacaaaaaccaatcattatgtgcctgtggtttgtgttgacagAAGCTAGAAGGACAGGTAGCCTCTGATGAGGATCTGAGGCTGTCCGACACGCTGAGGTATTACATGCTAGATTCACAGGTAGCCAAGgtaacacacagcaatgctaacttaagtcctaagtaggtgtatagtgataa Alignment from GeneWise AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAG gtctataccacaaaaaccaatcattatgtgcctgtggtttgtgttgacagAAGCTAGAAGGACAGGTAGCCTCTGATGAGGATCTGAGGCTGTCCGACACGCTGAGGTATTACATGCTAGATTCACAGGTAGCCAAGgtaacacacagcaatgctaacttaagtcctaagtaggtgtatagtgataa #### Sorbs1_ID7912_14 --> 0 - 2 Original Alignment AGCTCAGCAGTCAGCCCGACTCCAGACATTACGTCAGAGCCTCCTGGAta acccactattataactatttactattacgtcatctctgtgtcttttgtagATTTCAGTGGTCAGTCCAACCCCAGACATAACATCAGAGCCTCCTGGAtagtaatgggcacctcttatgttttatgttagcatagtggtgggacagtggg Alignment from CESAR AGCTCAGCAGTCAGCCCGACTCCAGACATTACGTCAGAGCCTCCTGGAta acccactattataactatttactattacgtcatctctgtgtcttttgtagATTTCAGTGGTCAGTCCAACCCCAGACATAACATCAGAGCCTCCTGGAtagtaatgggcacctcttatgttttatgttagcatagtggtgggacagtggg Alignment from Spaln_aa2Genome AGCTCAGCAGTCAGCCCGACTCCAGACATTACGTCAGAGCCTCCTGGATA acccactattataactatttactattacgtcatctctgtgtcttttgtagATTTCAGTGGTCAGTCCAACCCCAGACATAACATCAGAGCCTCCTGGATAgtaatgggcacctcttatgttttatgttagcatagtggtgggacagtggg Alignment from Spaln_nt2Genome AGCTCAGCAGTCAGCCCGACTCCAGACATTACGTCAGAGCCTCCTGGATA acccactattataactatttactattacgtcatctctgtgtcttttgtagATTTCAGTGGTCAGTCCAACCCCAGACATAACATCAGAGCCTCCTGGATAgtaatgggcacctcttatgttttatgttagcatagtggtgggacagtggg Alignment from Pairagon AGCTCAGCAGTCAGCCCGACTCCAGACATTACGTCAGAGCCTCCTGGATA acccactattataactatttactattacgtcatctctgtgtcttttgtagATTTCAGTGGTCAGTCCAACCCCAGACATAACATCAGAGCCTCCTGGATAgtaatgggcacctcttatgttttatgttagcatagtggtgggacagtggg Alignment from Exonerate_protein2genome AGCTCAGCAGTCAGCCCGACTCCAGACATTACGTCAGAGCCTCCTGGATA acccactattataactatttactattacgtcatctctgtgtcttttgtagATTTCAGTGGTCAGTCCAACCCCAGACATAACATCAGAGCCTCCTGGATAgtaatgggcacctcttatgttttatgttagcatagtggtgggacagtggg Alignment from Exonerate_coding2genome AGCTCAGCAGTCAGCCCGACTCCAGACATTACGTCAGAGCCTCCTGGATA acccactattataactatttactattacgtcatctctgtgtcttttgtagATTTCAGTGGTCAGTCCAACCCCAGACATAACATCAGAGCCTCCTGGATAgtaatgggcacctcttatgttttatgttagcatagtggtgggacagtggg Alignment from GeneWise AGCTCAGCAGTCAGCCCGACTCCAGACATTACGTCAGAGCCTCCTGGATA acccactattataactatttactattacgtcatctctgtgtcttttgtagATTTCAGTGGTCAGTCCAACCCCAGACATAACATCAGAGCCTCCTGGATAgtaatgggcacctcttatgttttatgttagcatagtggtgggacagtggg #### Sorbs1_ID7936_2 --> 2 - 1 Original Alignment aaTGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGACAAAg tctgcatgtgtgggtgcaaggcctattgtctgctctttcgttgcttacaggaTGTGATGTTGGAAGCTCTAAAGCAGTGGTGAAAGGTTTGGTGTCTGGCAATCATGGACCAGAAAAGggtaggtaagtcaatgaggatcctggtttagcatttaagtctgcttgcctc Alignment from CESAR aaTGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGACAAAg tctgcatgtgtgggtgcaaggcctattgtctgctctttcgttgcttacaggaTGTGATGTTGGAAGCTCTAAAGCAGTGGTGAAAGGTTTGGTGTCTGGCAATCATGGACCAGAAAAGggtaggtaagtcaatgaggatcctggtttagcatttaagtctgcttgcctc Alignment from Spaln_aa2Genome AATGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGACAAAG tctgcatgtgtgggtgcaaggcctattgtctgctctttcgttgcttacagGATGTGATGTTGGAAGCTCTAAAGCAGTGGTGAAAGGTTTGGTGTCTGGCAATCATGGACCAGAAAAGGgtaggtaagtcaatgaggatcctggtttagcatttaagtctgcttgcctc Alignment from Spaln_nt2Genome --TGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGACAAAG tctgcatgtgtgggtgcaaggcctattgtctgctctttcgttgcttacagGATGTGATGTTGGAAGCTCTAAAGCAGTGGTGAAAGGTTTGGTGTCTGGCAATCATGGACCAGAAAAGGgtaggtaagtcaatgaggatcctggtttagcatttaagtctgcttgcctc Alignment from Pairagon -ATGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGACAAAG tctgcatgtgtgggtgcaaggcctattgtctgctctttcgttgcttacagGATGTGATGTTGGAAGCTCTAAAGCAGTGGTGAAAGGTTTGGTGTCTGGCAATCATGGACCAGAAAAGGgtaggtaagtcaatgaggatcctggtttagcatttaagtctgcttgcctc Alignment from Exonerate_protein2genome TGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGACAAAG tctgcatgtgtgggtgcaaggcctattgtctgctctttcgttgcttacaggaTGTGATGTTGGAAGCTCTAAAGCAGTGGTGAAAGGTTTGGTGTCTGGCAATCATGGACCAGAAAAGGgtaggtaagtcaatgaggatcctggtttagcatttaagtctgcttgcctc Alignment from Exonerate_coding2genome TGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGACAAAG tctgcatgtgtgggtgcaaggcctattgtctgctctttcgttgcttacaggaTGTGATGTTGGAAGCTCTAAAGCAGTGGTGAAAGGTTTGGTGTCTGGCAATCATGGACCAGAAAAGGgtaggtaagtcaatgaggatcctggtttagcatttaagtctgcttgcctc Alignment from GeneWise AGTTCTGAATGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGACAAAG gcatgtgtgggtgcaaggcctattgtctgctctttcgttgctt---ACAGGATGTGATGTTGGAAGCTCTAAAGCAGTGGTGAAAGGTTTGGTGTCTGGCAATCATGGACCAGAAAAGGgtaggtaagtcaatgaggatcctggtttagcatttaagtctgcttgcctc #### Sorcs3_ID10608_12 --> 2 - 0 Original Alignment gtAATATTGGCTCCGAACTCTCCTATACGGATATCGGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAG agatcacattttgatcaaaactcaacttttttaaaaaatattttgaacaggtAATATTGGCTCTGAACTCTCCTATACAGATATCAGTGTGTTCATTTCTTCTGATGGGGGCAACACATGGAGACAAgtaagtagaagattccaaggagagctattggccccagtgtgatgggtagg Alignment from CESAR gtAATATTGGCTCCGAACTCTCCTATACGGATATCGGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAG agatcacattttgatcaaaactcaacttttttaaaaaatattttgaacaggtAATATTGGCTCTGAACTCTCCTATACAGATATCAGTGTGTTCATTTCTTCTGATGGGGGCAACACATGGAGACAAgtaagtagaagattccaaggagagctattggccccagtgtgatgggtagg Alignment from Spaln_aa2Genome GTAATATTGGCTCCGAACTCTCCTATACGGATATCGGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAG agatcacattttgatcaaaactcaacttttttaaaaaatattttgaacagGTAATATTGGCTCTGAACTCTCCTATACAGATATCAGTGTGTTCATTTCTTCTGATGGGGGCAACACATGGAGACAAgtaagtagaagattccaaggagagctattggccccagtgtgatgggtagg Alignment from Spaln_nt2Genome GTAATATTGGCTCCGAACTCTCCTATACGGATATCGGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAG agatcacattttgatcaaaactcaacttttttaaaaaatattttgaacagGTAATATTGGCTCTGAACTCTCCTATACAGATATCAGTGTGTTCATTTCTTCTGATGGGGGCAACACATGGAGACAAgtaagtagaagattccaaggagagctattggccccagtgtgatgggtagg Alignment from Pairagon GTAATATTGGCTCCGAACTCTCCTATACGGATATCGGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAG agatcacattttgatcaaaactcaacttttttaaaaaatattttgaacagGTAATATTGGCTCTGAACTCTCCTATACAGATATCAGTGTGTTCATTTCTTCTGATGGGGGCAACACATGGAGACAAgtaagtagaagattccaaggagagctattggccccagtgtgatgggtagg Alignment from Exonerate_protein2genome GTAATATTGGCTCCGAACTCTCCTATACGGATATCGGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAG agatcacattttgatcaaaactcaacttttttaaaaaatattttgaacagGTAATATTGGCTCTGAACTCTCCTATACAGATATCAGTGTGTTCATTTCTTCTGATGGGGGCAACACATGGAGACAAgtaagtagaagattccaaggagagctattggccccagtgtgatgggtagg Alignment from Exonerate_coding2genome GTAATATTGGCTCCGAACTCTCCTATACGGATATCGGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAG agatcacattttgatcaaaactcaacttttttaaaaaatattttgaacagGTAATATTGGCTCTGAACTCTCCTATACAGATATCAGTGTGTTCATTTCTTCTGATGGGGGCAACACATGGAGACAAgtaagtagaagattccaaggagagctattggccccagtgtgatgggtagg Alignment from GeneWise GTAATATTGGCTCCGAACTCTCCTATACGGATATCGGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAG agatcacattttgatcaaaactcaacttttttaaaaaatattttgaacagGTAATATTGGCTCTGAACTCTCCTATACAGATATCAGTGTGTTCATTTCTTCTGATGGGGGCAACACATGGAGACAAgtaagtagaagattccaaggagagctattggccccagtgtgatgggtagg #### Sorcs3_ID10621_15 --> 1 - 0 Original Alignment aGTTTTTGGCCACTTCAGCCTGCGCTCCGAATGGCAGTTGGTGAAAGTGGACTACAAGTCTATCTTCAGCCGGCGCTGTACCAAGGAGGACTTTGAGACTTGGCACCTGCTCAATCAG cgcaatctccagtactagctgttttatctatcaacgttaatgttttgtagtGTTCTTGGCCACTTTAGCTTGCGATCAGAATGGCAGTTGGTGAAAGTAGACCACAAGTCTATCTTCAGCAGGCGATGCATGCGGGAGGACTTCAAGACTTGGCACCTGCTCAACCAGgtaagtcagtatgcattgtataagatactggtggctccagaagcatgact Alignment from CESAR aGTTTTTGGCCACTTCAGCCTGCGCTCCGAATGGCAGTTGGTGAAAGTGGACTACAAGTCTATCTTCAGCCGGCGCTGTACCAAGGAGGACTTTGAGACTTGGCACCTGCTCAATCAG cgcaatctccagtactagctgttttatctatcaacgttaatgttttgtagtGTTCTTGGCCACTTTAGCTTGCGATCAGAATGGCAGTTGGTGAAAGTAGACCACAAGTCTATCTTCAGCAGGCGATGCATGCGGGAGGACTTCAAGACTTGGCACCTGCTCAACCAGgtaagtcagtatgcattgtataagatactggtggctccagaagcatgact Alignment from Spaln_aa2Genome AGTTTTTGGCCACTTCAGCCTGCGCTCCGAATGGCAGTTGGTGAAAGTGGACTACAAGTCTATCTTCAGCCGGCGCTGTACCAAGGAGGACTTTGAGACTTGGCACCTGCTCAATCAG cgcaatctccagtactagctgttttatctatcaacgttaatgttttgtagTGTTCTTGGCCACTTTAGCTTGCGATCAGAATGGCAGTTGGTGAAAGTAGACCACAAGTCTATCTTCAGCAGGCGATGCATGCGGGAGGACTTCAAGACTTGGCACCTGCTCAACCAGgtaagtcagtatgcattgtataagatactggtggctccagaagcatgact Alignment from Spaln_nt2Genome AGTTTTTGGCCACTTCAGCCTGCGCTCCGAATGGCAGTTGGTGAAAGTGGACTACAAGTCTATCTTCAGCCGGCGCTGTACCAAGGAGGACTTTGAGACTTGGCACCTGCTCAATCAG cgcaatctccagtactagctgttttatctatcaacgttaatgttttgtagTGTTCTTGGCCACTTTAGCTTGCGATCAGAATGGCAGTTGGTGAAAGTAGACCACAAGTCTATCTTCAGCAGGCGATGCATGCGGGAGGACTTCAAGACTTGGCACCTGCTCAACCAGgtaagtcagtatgcattgtataagatactggtggctccagaagcatgact Alignment from Pairagon AGTTTTTGGCCACTTCAGCCTGCGCTCCGAATGGCAGTTGGTGAAAGTGGACTACAAGTCTATCTTCAGCCGGCGCTGTACCAAGGAGGACTTTGAGACTTGGCACCTGCTCAATCAG cgcaatctccagtactagctgttttatctatcaacgttaatgttttgtagTGTTCTTGGCCACTTTAGCTTGCGATCAGAATGGCAGTTGGTGAAAGTAGACCACAAGTCTATCTTCAGCAGGCGATGCATGCGGGAGGACTTCAAGACTTGGCACCTGCTCAACCAGgtaagtcagtatgcattgtataagatactggtggctccagaagcatgact Alignment from Exonerate_protein2genome AGTTTTTGGCCACTTCAGCCTGCGCTCCGAATGGCAGTTGGTGAAAGTGGACTACAAGTCTATCTTCAGCCGGCGCTGTACCAAGGAGGACTTTGAGACTTGGCACCTGCTCAATCAG cgcaatctccagtactagctgttttatctatcaacgttaatgttttgtagTGTTCTTGGCCACTTTAGCTTGCGATCAGAATGGCAGTTGGTGAAAGTAGACCACAAGTCTATCTTCAGCAGGCGATGCATGCGGGAGGACTTCAAGACTTGGCACCTGCTCAACCAGgtaagtcagtatgcattgtataagatactggtggctccagaagcatgact Alignment from Exonerate_coding2genome AGTTTTTGGCCACTTCAGCCTGCGCTCCGAATGGCAGTTGGTGAAAGTGGACTACAAGTCTATCTTCAGCCGGCGCTGTACCAAGGAGGACTTTGAGACTTGGCACCTGCTCAATCAG cgcaatctccagtactagctgttttatctatcaacgttaatgttttgtagTGTTCTTGGCCACTTTAGCTTGCGATCAGAATGGCAGTTGGTGAAAGTAGACCACAAGTCTATCTTCAGCAGGCGATGCATGCGGGAGGACTTCAAGACTTGGCACCTGCTCAACCAGgtaagtcagtatgcattgtataagatactggtggctccagaagcatgact Alignment from GeneWise AGTTTTTGGCCACTTCAGCCTGCGCTCCGAATGGCAGTTGGTGAAAGTGGACTACAAGTCTATCTTCAGCCGGCGCTGTACCAAGGAGGACTTTGAGACTTGGCACCTGCTCAATCAG cgcaatctccagtactagctgttttatctatcaacgttaatgttttgtagTGTTCTTGGCCACTTTAGCTTGCGATCAGAATGGCAGTTGGTGAAAGTAGACCACAAGTCTATCTTCAGCAGGCGATGCATGCGGGAGGACTTCAAGACTTGGCACCTGCTCAACCAGgtaagtcagtatgcattgtataagatactggtggctccagaagcatgact #### Sorcs3_ID10630_20 --> 2 - 0 Original Alignment gtCCAGTGGAACACGTTCACCTTCGAGTCCCATTCGTCGCAATACGGAATAAGGACGTCAACATCAGTGCAGTTGTGTGGCCCAGTCAGCTAGGGACCCTCACCTACTTCTGGTGGTTTGGAAATAGCACAAAG aacaaatggatcttgctttgtatacataggtggcgctgacatgcacgcaggtCCAGTGGAACACGTTCACCTTCGAGTCCCATTTGTTGCAATACGGAATAAGGACGTCAACATCAGGGCAGTTGTGTGGCCCAGTCAGCTAGGGACTCTCACCTATTTCTGGTGGTTTGGAAATAGCACGAAGgtacccttcctgcttagattctcactactgcctaaatatgaactagatcc Alignment from CESAR gtCCAGTGGAACACGTTCACCTTCGAGTCCCATTCGTCGCAATACGGAATAAGGACGTCAACATCAGTGCAGTTGTGTGGCCCAGTCAGCTAGGGACCCTCACCTACTTCTGGTGGTTTGGAAATAGCACAAAG aacaaatggatcttgctttgtatacataggtggcgctgacatgcacgcaggtCCAGTGGAACACGTTCACCTTCGAGTCCCATTTGTTGCAATACGGAATAAGGACGTCAACATCAGGGCAGTTGTGTGGCCCAGTCAGCTAGGGACTCTCACCTATTTCTGGTGGTTTGGAAATAGCACGAAGgtacccttcctgcttagattctcactactgcctaaatatgaactagatcc Alignment from Spaln_aa2Genome GTCCAGTGGAACACGTTCACCTTCGAGTCCCATTCGTCGCAATACGGAATAAGGACGTCAACATCAGTGCAGTTGTGTGGCCCAGTCAGCTAGGGACCCTCACCTACTTCTGGTGGTTTGGAAATAGCACAAAG aacaaatggatcttgctttgtatacataggtggcgctgacatgcacgcagGTCCAGTGGAACACGTTCACCTTCGAGTCCCATTTGTTGCAATACGGAATAAGGACGTCAACATCAGGGCAGTTGTGTGGCCCAGTCAGCTAGGGACTCTCACCTATTTCTGGTGGTTTGGAAATAGCACGAAGgtacccttcctgcttagattctcactactgcctaaatatgaactagatcc Alignment from Spaln_nt2Genome GTCCAGTGGAACACGTTCACCTTCGAGTCCCATTCGTCGCAATACGGAATAAGGACGTCAACATCAGTGCAGTTGTGTGGCCCAGTCAGCTAGGGACCCTCACCTACTTCTGGTGGTTTGGAAATAGCACAAAG aacaaatggatcttgctttgtatacataggtggcgctgacatgcacgcagGTCCAGTGGAACACGTTCACCTTCGAGTCCCATTTGTTGCAATACGGAATAAGGACGTCAACATCAGGGCAGTTGTGTGGCCCAGTCAGCTAGGGACTCTCACCTATTTCTGGTGGTTTGGAAATAGCACGAAGgtacccttcctgcttagattctcactactgcctaaatatgaactagatcc Alignment from Pairagon GTCCAGTGGAACACGTTCACCTTCGAGTCCCATTCGTCGCAATACGGAATAAGGACGTCAACATCAGTGCAGTTGTGTGGCCCAGTCAGCTAGGGACCCTCACCTACTTCTGGTGGTTTGGAAATAGCACAAAG aacaaatggatcttgctttgtatacataggtggcgctgacatgcacgcagGTCCAGTGGAACACGTTCACCTTCGAGTCCCATTTGTTGCAATACGGAATAAGGACGTCAACATCAGGGCAGTTGTGTGGCCCAGTCAGCTAGGGACTCTCACCTATTTCTGGTGGTTTGGAAATAGCACGAAGgtacccttcctgcttagattctcactactgcctaaatatgaactagatcc Alignment from Exonerate_protein2genome GTCCAGTGGAACACGTTCACCTTCGAGTCCCATTCGTCGCAATACGGAATAAGGACGTCAACATCAGTGCAGTTGTGTGGCCCAGTCAGCTAGGGACCCTCACCTACTTCTGGTGGTTTGGAAATAGCACAAAG aacaaatggatcttgctttgtatacataggtggcgctgacatgcacgcagGTCCAGTGGAACACGTTCACCTTCGAGTCCCATTTGTTGCAATACGGAATAAGGACGTCAACATCAGGGCAGTTGTGTGGCCCAGTCAGCTAGGGACTCTCACCTATTTCTGGTGGTTTGGAAATAGCACGAAGgtacccttcctgcttagattctcactactgcctaaatatgaactagatcc Alignment from Exonerate_coding2genome GTCCAGTGGAACACGTTCACCTTCGAGTCCCATTCGTCGCAATACGGAATAAGGACGTCAACATCAGTGCAGTTGTGTGGCCCAGTCAGCTAGGGACCCTCACCTACTTCTGGTGGTTTGGAAATAGCACAAAG aacaaatggatcttgctttgtatacataggtggcgctgacatgcacgcagGTCCAGTGGAACACGTTCACCTTCGAGTCCCATTTGTTGCAATACGGAATAAGGACGTCAACATCAGGGCAGTTGTGTGGCCCAGTCAGCTAGGGACTCTCACCTATTTCTGGTGGTTTGGAAATAGCACGAAGgtacccttcctgcttagattctcactactgcctaaatatgaactagatcc Alignment from GeneWise GTCCAGTGGAACACGTTCACCTTCGAGTCCCATTCGTCGCAATACGGAATAAGGACGTCAACATCAGTGCAGTTGTGTGGCCCAGTCAGCTAGGGACCCTCACCTACTTCTGGTGGTTTGGAAATAGCACAAAG aacaaatggatcttgctttgtatacataggtggcgctgacatgcacgcagGTCCAGTGGAACACGTTCACCTTCGAGTCCCATTTGTTGCAATACGGAATAAGGACGTCAACATCAGGGCAGTTGTGTGGCCCAGTCAGCTAGGGACTCTCACCTATTTCTGGTGGTTTGGAAATAGCACGAAGgtacccttcctgcttagattctcactactgcctaaatatgaactagatcc #### Sorcs3_ID10632_21 --> 0 - 1 Original Alignment CCCCTCATCACCTTGGACAGCAGCATCTCTTTCACATTCCTT---GCAGAGGGAACCAACACCATCACTGTCCAGGTTGCTGCTGGGAATGCCCTCATCCAAGACACAAAAGAGATTGCAGTACATg tgtcaagcatttaaccattataggctagggataatgctctttccttatagCCCCTCATCACCCTGGACAGCAGTATCTCTTTTAGTTTCCTGCTAGCAGATGGGACCAACACAATTGCTGTCCAGGTTGCAGCTGGAAATGCATTCATCCAGGACACAAAAGAGATTGCAGTACATggtaagtattgaggtgtaagtcctcacttgtgatggaagtctcagatctat Alignment from CESAR CCCCTCATCACCTTGGACAGCAGCATCTCTTTCACATTCCTT---GCAGAGGGAACCAACACCATCACTGTCCAGGTTGCTGCTGGGAATGCCCTCATCCAAGACACAAAAGAGATTGCAGTACATg tgtcaagcatttaaccattataggctagggataatgctctttccttatagCCCCTCATCACCCTGGACAGCAGTATCTCTTTTAGTTTCCTGCTAGCAGATGGGACCAACACAATTGCTGTCCAGGTTGCAGCTGGAAATGCATTCATCCAGGACACAAAAGAGATTGCAGTACATggtaagtattgaggtgtaagtcctcacttgtgatggaagtctcagatctat Alignment from Spaln_aa2Genome CCCCTCATCACCTTGGACAGCAGCATCTCTTTCACATTC---CTTGCAGAGGGAACCAACACCATCACTGTCCAGGTTGCTGCTGGGAATGCCCTCATCCAAGACACAAAAGAGATTGCAGTACATG tgtcaagcatttaaccattataggctagggataatgctctttccttatagCCCCTCATCACCCTGGACAGCAGTATCTCTTTTAGTTTCCTGCTAGCAGATGGGACCAACACAATTGCTGTCCAGGTTGCAGCTGGAAATGCATTCATCCAGGACACAAAAGAGATTGCAGTACATGgtaagtattgaggtgtaagtcctcacttgtgatggaagtctcagatctat Alignment from Spaln_nt2Genome CCCCTCATCACCTTGGACAGCAGCATCTCTTTCACATTCCTT---GCAGAGGGAACCAACACCATCACTGTCCAGGTTGCTGCTGGGAATGCCCTCATCCAAGACACAAAAGAGATTGCAGTACATG tgtcaagcatttaaccattataggctagggataatgctctttccttatagCCCCTCATCACCCTGGACAGCAGTATCTCTTTTAGTTTCCTGCTAGCAGATGGGACCAACACAATTGCTGTCCAGGTTGCAGCTGGAAATGCATTCATCCAGGACACAAAAGAGATTGCAGTACATGgtaagtattgaggtgtaagtcctcacttgtgatggaagtctcagatctat Alignment from Pairagon CCCCTCATCACCTTGGACAGCAGCATCTCTTTCACATTCCTT---GCAGAGGGAACCAACACCATCACTGTCCAGGTTGCTGCTGGGAATGCCCTCATCCAAGACACAAAAGAGATTGCAGTACATG tgtcaagcatttaaccattataggctagggataatgctctttccttatagCCCCTCATCACCCTGGACAGCAGTATCTCTTTTAGTTTCCTGCTAGCAGATGGGACCAACACAATTGCTGTCCAGGTTGCAGCTGGAAATGCATTCATCCAGGACACAAAAGAGATTGCAGTACATGgtaagtattgaggtgtaagtcctcacttgtgatggaagtctcagatctat Alignment from Exonerate_protein2genome CCCCTCATCACCTTGGACAGCAGCATCTCTTTCACATTC---CTTGCAGAGGGAACCAACACCATCACTGTCCAGGTTGCTGCTGGGAATGCCCTCATCCAAGACACAAAAGAGATTGCAGTACATG tgtcaagcatttaaccattataggctagggataatgctctttccttatagCCCCTCATCACCCTGGACAGCAGTATCTCTTTTAGTTTCCTGCTAGCAGATGGGACCAACACAATTGCTGTCCAGGTTGCAGCTGGAAATGCATTCATCCAGGACACAAAAGAGATTGCAGTACATGgtaagtattgaggtgtaagtcctcacttgtgatggaagtctcagatctat Alignment from Exonerate_coding2genome CCCCTCATCACCTTGGACAGCAGCATCTCTTTCACATTC---CTTGCAGAGGGAACCAACACCATCACTGTCCAGGTTGCTGCTGGGAATGCCCTCATCCAAGACACAAAAGAGATTGCAGTACATG tgtcaagcatttaaccattataggctagggataatgctctttccttatagCCCCTCATCACCCTGGACAGCAGTATCTCTTTTAGTTTCCTGCTAGCAGATGGGACCAACACAATTGCTGTCCAGGTTGCAGCTGGAAATGCATTCATCCAGGACACAAAAGAGATTGCAGTACATGgtaagtattgaggtgtaagtcctcacttgtgatggaagtctcagatctat Alignment from GeneWise CCCCTCATCACCTTGGACAGCAGCATCTCTTTCACATTCCTT---GCAGAGGGAACCAACACCATCACTGTCCAGGTTGCTGCTGGGAATGCCCTCATCCAAGACACAAAAGAGATTGCAGTACATG tgtcaagcatttaaccattataggctagggataatgctctttccttatagCCCCTCATCACCCTGGACAGCAGTATCTCTTTTAGTTTCCTGCTAGCAGATGGGACCAACACAATTGCTGTCCAGGTTGCAGCTGGAAATGCATTCATCCAGGACACAAAAGAGATTGCAGTACATGgtaagtattgaggtgtaagtcctcacttgtgatggaagtctcagatctat #### Sptbn2_ID611_6 --> 1 - 1 Original Alignment gCCAGACCTGTTGGATTTTGAGTCCCTGAAGAAGTGTAATGCACACTACAATCTGCAGAATGCTTTCAATCTGGCTGAAAAGGAACTTGGCCTGACGAAGCTCCTGGATCCTGAAg tcaaaatggcaatggcacaacaggacattaatctgtgatctttcttacaggCCAGATCTGTTGGATTTTGAGTCCCTGAAAAAGTGTAATGTCCACTACAATTTGCAGAATGCTTTCAATCTTGCTGAAAAGGAACTTGGCCTTAGAAGAATCCTGGATTCTGAGggtaagatggattaataagccagttgataacaagacagagactactatcaa Alignment from CESAR gCCAGACCTGTTGGATTTTGAGTCCCTGAAGAAGTGTAATGCACACTACAATCTGCAGAATGCTTTCAATCTGGCTGAAAAGGAACTTGGCCTGACGAAGCTCCTGGATCCTGAAg tcaaaatggcaatggcacaacaggacattaatctgtgatctttcttacaggCCAGATCTGTTGGATTTTGAGTCCCTGAAAAAGTGTAATGTCCACTACAATTTGCAGAATGCTTTCAATCTTGCTGAAAAGGAACTTGGCCTTAGAAGAATCCTGGATTCTGAGggtaagatggattaataagccagttgataacaagacagagactactatcaa Alignment from Spaln_aa2Genome GCCAGACCTGTTGGATTTTGAGTCCCTGAAGAAGTGTAATGCACACTACAATCTGCAGAATGCTTTCAATCTGGCTGAAAAGGAACTTGGCCTGACGAAGCTCCTGGATCCTGAAG tcaaaatggcaatggcacaacaggacattaatctgtgatctttcttacagGCCAGATCTGTTGGATTTTGAGTCCCTGAAAAAGTGTAATGTCCACTACAATTTGCAGAATGCTTTCAATCTTGCTGAAAAGGAACTTGGCCTTAGAAGAATCCTGGATTCTGAGGgtaagatggattaataagccagttgataacaagacagagactactatcaa Alignment from Spaln_nt2Genome GCCAGACCTGTTGGATTTTGAGTCCCTGAAGAAGTGTAATGCACACTACAATCTGCAGAATGCTTTCAATCTGGCTGAAAAGGAACTTGGCCTGACGAAGCTCCTGGATCCTGAAG tcaaaatggcaatggcacaacaggacattaatctgtgatctttcttacagGCCAGATCTGTTGGATTTTGAGTCCCTGAAAAAGTGTAATGTCCACTACAATTTGCAGAATGCTTTCAATCTTGCTGAAAAGGAACTTGGCCTTAGAAGAATCCTGGATTCTGAGGgtaagatggattaataagccagttgataacaagacagagactactatcaa Alignment from Pairagon GCCAGACCTGTTGGATTTTGAGTCCCTGAAGAAGTGTAATGCACACTACAATCTGCAGAATGCTTTCAATCTGGCTGAAAAGGAACTTGGCCTGACGAAGCTCCTGGATCCTGAAG tcaaaatggcaatggcacaacaggacattaatctgtgatctttcttacagGCCAGATCTGTTGGATTTTGAGTCCCTGAAAAAGTGTAATGTCCACTACAATTTGCAGAATGCTTTCAATCTTGCTGAAAAGGAACTTGGCCTTAGAAGAATCCTGGATTCTGAGGgtaagatggattaataagccagttgataacaagacagagactactatcaa Alignment from Exonerate_protein2genome tcaaaatggcaatggcacaacaggacattaatctgtgatctttcttacaggccagatctgttggattttgagtccctgaaaaagtgtaatgtccactacaatttgcagaatgctttcaatcttgctgaaaaggaacttggccttagaagaatcctggattctgagggtaagatggattaataagccagttgataacaagacagagactactatcaa Alignment from Exonerate_coding2genome tcaaaatggcaatggcacaacaggacattaatctgtgatctttcttacaggccagatctgttggattttgagtccctgaaaaagtgtaatgtccactacaatttgcagaatgctttcaatcttgctgaaaaggaacttggccttagaagaatcctggattctgagggtaagatggattaataagccagttgataacaagacagagactactatcaa Alignment from GeneWise GCCAGACCTGTTGGATTTTGAGTCCCTGAAGAAGTGTAATGCACACTACAATCTGCAGAATGCTTTCAATCTGGCTGAAAAGGAACTTGGCCTGACGAAGCTCCTGGATCCTGAAG tcaaaatggcaatggcacaacaggacattaatctgtgatctttcttacagGCCAGATCTGTTGGATTTTGAGTCCCTGAAAAAGTGTAATGTCCACTACAATTTGCAGAATGCTTTCAATCTTGCTGAAAAGGAACTTGGCCTTAGAAGAATCCTGGATTCTGAGGgtaagatggattaataagccagttgataacaagacagagactactatcaa #### Sptbn2_ID617_12 --> 0 - 1 Original Alignment GGCCGACTGCAGTCTCAGGACTTGGGCAAGCACCTGGCTGGAGTGGAGGACCTCCTGCAGCTACACGAACTGGTGGAGGCGGACATCGCGGTTCAGGCTGAGAGGGTTCGAGCGGTCAGCGCCTCTGCCCTGCGTTTCTGCGACCCAGGGAAAg gtattcacaggtcttgtacccacttgttttctttttttttttttctttagGGGCGATTGCAGTCTCAGGAACGGGGCCAGCACCTTGCTGGAGTAGAAGATTTTCTACGGTTACATGAACTAGTGGAAGCAGACATTGCAGTGCATTCCGAGCGGGTCCAGGCAGTCAGTGCTTCAGCTACAAGATTCTGTGACCCAGGCAAAagtaaatactgaggaggggtaaatgtgctagaaaacagggatgacctaggc Alignment from CESAR GGCCGACTGCAGTCTCAGGACTTGGGCAAGCACCTGGCTGGAGTGGAGGACCTCCTGCAGCTACACGAACTGGTGGAGGCGGACATCGCGGTTCAGGCTGAGAGGGTTCGAGCGGTCAGCGCCTCTGCCCTGCGTTTCTGCGACCCAGGGAAAg gtattcacaggtcttgtacccacttgttttctttttttttttttctttagGGGCGATTGCAGTCTCAGGAACGGGGCCAGCACCTTGCTGGAGTAGAAGATTTTCTACGGTTACATGAACTAGTGGAAGCAGACATTGCAGTGCATTCCGAGCGGGTCCAGGCAGTCAGTGCTTCAGCTACAAGATTCTGTGACCCAGGCAAAagtaaatactgaggaggggtaaatgtgctagaaaacagggatgacctaggc Alignment from Spaln_aa2Genome GGCCGACTGCAGTCTCAGGACTTGGGCAAGCACCTGGCTGGAGTGGAGGACCTCCTGCAGCTACACGAACTGGTGGAGGCGGACATCGCGGTTCAGGCTGAGAGGGTTCGAGCGGTCAGCGCCTCTGCCCTGCGTTTCTGCGACCCAGGGAAAG gtattcacaggtcttgtacccacttgttttctttttttttttttctttagGGGCGATTGCAGTCTCAGGAACGGGGCCAGCACCTTGCTGGAGTAGAAGATTTTCTACGGTTACATGAACTAGTGGAAGCAGACATTGCAGTGCATTCCGAGCGGGTCCAGGCAGTCAGTGCTTCAGCTACAAGATTCTGTGACCCAGGCAAAAgtaaatactgaggaggggtaaatgtgctagaaaacagggatgacctaggc Alignment from Spaln_nt2Genome GGCCGACTGCAGTCTCAGGACTTGGGCAAGCACCTGGCTGGAGTGGAGGACCTCCTGCAGCTACACGAACTGGTGGAGGCGGACATCGCGGTTCAGGCTGAGAGGGTTCGAGCGGTCAGCGCCTCTGCCCTGCGTTTCTGCGACCCAGGGAAAG gtattcacaggtcttgtacccacttgttttctttttttttttttctttagGGGCGATTGCAGTCTCAGGAACGGGGCCAGCACCTTGCTGGAGTAGAAGATTTTCTACGGTTACATGAACTAGTGGAAGCAGACATTGCAGTGCATTCCGAGCGGGTCCAGGCAGTCAGTGCTTCAGCTACAAGATTCTGTGACCCAGGCAAAAgtaaatactgaggaggggtaaatgtgctagaaaacagggatgacctaggc Alignment from Pairagon GGCCGACTGCAGTCTCAGGACTTGGGCAAGCACCTGGCTGGAGTGGAGGACCTCCTGCAGCTACACGAACTGGTGGAGGCGGACATCGCGGTTCAGGCTGAGAGGGTTCGAGCGGTCAGCGCCTCTGCCCTGCGTTTCTGCGACCCAGGGAAAG gtattcacaggtcttgtacccacttgttttctttttttttttttctttagGGGCGATTGCAGTCTCAGGAACGGGGCCAGCACCTTGCTGGAGTAGAAGATTTTCTACGGTTACATGAACTAGTGGAAGCAGACATTGCAGTGCATTCCGAGCGGGTCCAGGCAGTCAGTGCTTCAGCTACAAGATTCTGTGACCCAGGCAAAAgtaaatactgaggaggggtaaatgtgctagaaaacagggatgacctaggc Alignment from Exonerate_protein2genome gtattcacaggtcttgtacccacttgttttctttttttttttttctttaggggcgattgcagtctcaggaacggggccagcaccttgctggagtagaagattttctacggttacatgaactagtggaagcagacattgcagtgcattccgagcgggtccaggcagtcagtgcttcagctacaagattctgtgacccaggcaaaagtaaatactgaggaggggtaaatgtgctagaaaacagggatgacctaggc Alignment from Exonerate_coding2genome gtattcacaggtcttgtacccacttgttttctttttttttttttctttaggggcgattgcagtctcaggaacggggccagcaccttgctggagtagaagattttctacggttacatgaactagtggaagcagacattgcagtgcattccgagcgggtccaggcagtcagtgcttcagctacaagattctgtgacccaggcaaaagtaaatactgaggaggggtaaatgtgctagaaaacagggatgacctaggc Alignment from GeneWise GGCCGACTGCAGTCTCAGGACTTGGGCAAGCACCTGGCTGGAGTGGAGGACCTCCTGCAGCTACACGAACTGGTGGAGGCGGACATCGCGGTTCAGGCTGAGAGGGTTCGAGCGGTCAGCGCCTCTGCCCTGCGTTTCTGCGACCCAGGGAAAG gtattcacaggtcttgtacccacttgttttctttttttttttttctttagGGGCGATTGCAGTCTCAGGAACGGGGCCAGCACCTTGCTGGAGTAGAAGATTTTCTACGGTTACATGAACTAGTGGAAGCAGACATTGCAGTGCATTCCGAGCGGGTCCAGGCAGTCAGTGCTTCAGCTACAAGATTCTGTGACCCAGGCAAAAgtaaatactgaggaggggtaaatgtgctagaaaacagggatgacctaggc #### Sptbn2_ID625_20 --> 0 - 0 Original Alignment ATGCTGGAACGAGAGATGGCTGTGAGAGAGAAGGAGGTAGAGGCGATACAGGCCCAGGCCCAGGCCCTGGCCCAGGAAGACCAGAGTGCAGGGGAGGTAGAAAGGACCTCAAGGGCTGTGGAGGAGAAGTTCAGGGCCTTGTGTCAACCCATGAAAGAACGCTGCCGGCGCCTGCACGCCTCCCGGGAGCAGCACCAGTTCCACCGGGATGTGGAGGATGAGATA gctgtaagttctttctaagagttgtctaaactgctctgtccccaccacagATGCTGGAGCGAGAGATGGCTGTGAGGGCAAAAGAGGTAGAGGCTGTACAGGCACAGGCTCATGCCCTTGCTCAGGAAGATCAGAGTGCAGGAGAGGTAGAACGAACCTCGCGGGCTGTAGAAGAGAAATTCAAAGCCTTGTGTCAGCCTATGAAAGACTGCTGTCGGCGCTTGCATGCCTCACAGGAGCAGGACCAGTTCCACTGGGACGTAGAGGATGAGATAgtgaattatttaaactgctaggtaccctagcatatcccagatgctgaaat Alignment from CESAR ATGCTGGAACGAGAGATGGCTGTGAGAGAGAAGGAGGTAGAGGCGATACAGGCCCAGGCCCAGGCCCTGGCCCAGGAAGACCAGAGTGCAGGGGAGGTAGAAAGGACCTCAAGGGCTGTGGAGGAGAAGTTCAGGGCCTTGTGTCAACCCATGAAAGAACGCTGCCGGCGCCTGCACGCCTCCCGGGAGCAGCACCAGTTCCACCGGGATGTGGAGGATGAGATA gctgtaagttctttctaagagttgtctaaactgctctgtccccaccacagATGCTGGAGCGAGAGATGGCTGTGAGGGCAAAAGAGGTAGAGGCTGTACAGGCACAGGCTCATGCCCTTGCTCAGGAAGATCAGAGTGCAGGAGAGGTAGAACGAACCTCGCGGGCTGTAGAAGAGAAATTCAAAGCCTTGTGTCAGCCTATGAAAGACTGCTGTCGGCGCTTGCATGCCTCACAGGAGCAGGACCAGTTCCACTGGGACGTAGAGGATGAGATAgtgaattatttaaactgctaggtaccctagcatatcccagatgctgaaat Alignment from Spaln_aa2Genome ATGCTGGAACGAGAGATGGCTGTGAGAGAGAAGGAGGTAGAGGCGATACAGGCCCAGGCCCAGGCCCTGGCCCAGGAAGACCAGAGTGCAGGGGAGGTAGAAAGGACCTCAAGGGCTGTGGAGGAGAAGTTCAGGGCCTTGTGTCAACCCATGAAAGAACGCTGCCGGCGCCTGCACGCCTCCCGGGAGCAGCACCAGTTCCACCGGGATGTGGAGGATGAGATA gctgtaagttctttctaagagttgtctaaactgctctgtccccaccacagATGCTGGAGCGAGAGATGGCTGTGAGGGCAAAAGAGGTAGAGGCTGTACAGGCACAGGCTCATGCCCTTGCTCAGGAAGATCAGAGTGCAGGAGAGGTAGAACGAACCTCGCGGGCTGTAGAAGAGAAATTCAAAGCCTTGTGTCAGCCTATGAAAGACTGCTGTCGGCGCTTGCATGCCTCACAGGAGCAGGACCAGTTCCACTGGGACGTAGAGGATGAGATAgtgaattatttaaactgctaggtaccctagcatatcccagatgctgaaat Alignment from Spaln_nt2Genome ATGCTGGAACGAGAGATGGCTGTGAGAGAGAAGGAGGTAGAGGCGATACAGGCCCAGGCCCAGGCCCTGGCCCAGGAAGACCAGAGTGCAGGGGAGGTAGAAAGGACCTCAAGGGCTGTGGAGGAGAAGTTCAGGGCCTTGTGTCAACCCATGAAAGAACGCTGCCGGCGCCTGCACGCCTCCCGGGAGCAGCACCAGTTCCACCGGGATGTGGAGGATGAGATA gctgtaagttctttctaagagttgtctaaactgctctgtccccaccacagATGCTGGAGCGAGAGATGGCTGTGAGGGCAAAAGAGGTAGAGGCTGTACAGGCACAGGCTCATGCCCTTGCTCAGGAAGATCAGAGTGCAGGAGAGGTAGAACGAACCTCGCGGGCTGTAGAAGAGAAATTCAAAGCCTTGTGTCAGCCTATGAAAGACTGCTGTCGGCGCTTGCATGCCTCACAGGAGCAGGACCAGTTCCACTGGGACGTAGAGGATGAGATAgtgaattatttaaactgctaggtaccctagcatatcccagatgctgaaat Alignment from Pairagon ATGCTGGAACGAGAGATGGCTGTGAGAGAGAAGGAGGTAGAGGCGATACAGGCCCAGGCCCAGGCCCTGGCCCAGGAAGACCAGAGTGCAGGGGAGGTAGAAAGGACCTCAAGGGCTGTGGAGGAGAAGTTCAGGGCCTTGTGTCAACCCATGAAAGAACGCTGCCGGCGCCTGCACGCCTCCCGGGAGCAGCACCAGTTCCACCGGGATGTGGAGGATGAGATA gctgtaagttctttctaagagttgtctaaactgctctgtccccaccacagATGCTGGAGCGAGAGATGGCTGTGAGGGCAAAAGAGGTAGAGGCTGTACAGGCACAGGCTCATGCCCTTGCTCAGGAAGATCAGAGTGCAGGAGAGGTAGAACGAACCTCGCGGGCTGTAGAAGAGAAATTCAAAGCCTTGTGTCAGCCTATGAAAGACTGCTGTCGGCGCTTGCATGCCTCACAGGAGCAGGACCAGTTCCACTGGGACGTAGAGGATGAGATAgtgaattatttaaactgctaggtaccctagcatatcccagatgctgaaat Alignment from Exonerate_protein2genome ATGCTGGAACGAGAGATGGCTGTGAGAGAGAAGGAGGTAGAGGCGATACAGGCCCAGGCCCAGGCCCTGGCCCAGGAAGACCAGAGTGCAGGGGAGGTAGAAAGGACCTCAAGGGCTGTGGAGGAGAAGTTCAGGGCCTTGTGTCAACCCATGAAAGAACGCTGCCGGCGCCTGCACGCCTCCCGGGAGCAGCACCAGTTCCACCGGGATGTGGAGGATGAGATA gctgtaagttctttctaagagttgtctaaactgctctgtccccaccacagATGCTGGAGCGAGAGATGGCTGTGAGGGCAAAAGAGGTAGAGGCTGTACAGGCACAGGCTCATGCCCTTGCTCAGGAAGATCAGAGTGCAGGAGAGGTAGAACGAACCTCGCGGGCTGTAGAAGAGAAATTCAAAGCCTTGTGTCAGCCTATGAAAGACTGCTGTCGGCGCTTGCATGCCTCACAGGAGCAGGACCAGTTCCACTGGGACGTAGAGGATGAGATAgtgaattatttaaactgctaggtaccctagcatatcccagatgctgaaat Alignment from Exonerate_coding2genome ATGCTGGAACGAGAGATGGCTGTGAGAGAGAAGGAGGTAGAGGCGATACAGGCCCAGGCCCAGGCCCTGGCCCAGGAAGACCAGAGTGCAGGGGAGGTAGAAAGGACCTCAAGGGCTGTGGAGGAGAAGTTCAGGGCCTTGTGTCAACCCATGAAAGAACGCTGCCGGCGCCTGCACGCCTCCCGGGAGCAGCACCAGTTCCACCGGGATGTGGAGGATGAGATA gctgtaagttctttctaagagttgtctaaactgctctgtccccaccacagATGCTGGAGCGAGAGATGGCTGTGAGGGCAAAAGAGGTAGAGGCTGTACAGGCACAGGCTCATGCCCTTGCTCAGGAAGATCAGAGTGCAGGAGAGGTAGAACGAACCTCGCGGGCTGTAGAAGAGAAATTCAAAGCCTTGTGTCAGCCTATGAAAGACTGCTGTCGGCGCTTGCATGCCTCACAGGAGCAGGACCAGTTCCACTGGGACGTAGAGGATGAGATAgtgaattatttaaactgctaggtaccctagcatatcccagatgctgaaat Alignment from GeneWise ATGCTGGAACGAGAGATGGCTGTGAGAGAGAAGGAGGTAGAGGCGATACAGGCCCAGGCCCAGGCCCTGGCCCAGGAAGACCAGAGTGCAGGGGAGGTAGAAAGGACCTCAAGGGCTGTGGAGGAGAAGTTCAGGGCCTTGTGTCAACCCATGAAAGAACGCTGCCGGCGCCTGCACGCCTCCCGGGAGCAGCACCAGTTCCACCGGGATGTGGAGGATGAGATA gctgtaagttctttctaagagttgtctaaactgctctgtccccaccacagATGCTGGAGCGAGAGATGGCTGTGAGGGCAAAAGAGGTAGAGGCTGTACAGGCACAGGCTCATGCCCTTGCTCAGGAAGATCAGAGTGCAGGAGAGGTAGAACGAACCTCGCGGGCTGTAGAAGAGAAATTCAAAGCCTTGTGTCAGCCTATGAAAGACTGCTGTCGGCGCTTGCATGCCTCACAGGAGCAGGACCAGTTCCACTGGGACGTAGAGGATGAGATAgtgaattatttaaactgctaggtaccctagcatatcccagatgctgaaat #### Sptbn2_ID632_27 --> 1 - 0 Original Alignment gGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG tactaagttgggtggggccagacttcaagcttctctctgttctcttctagcGAAGTGTCCTCTGCAGACTTAGTCATCAAGAACCAGCCAGGAATCAAGGCAGAAATAGAAGCTAGAGCAGACAGGTTTTCTTCCTGCATTGACATGGGCCAAGAGTTGCTTGCCAGGAGCCATTATGCTGCCCAGGAAgtgaggaagatccggataatatcattactacaatcaagcaaccgagccca Alignment from CESAR gGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG tactaagttgggtggggccagacttcaagcttctctctgttctcttctagcGAAGTGTCCTCTGCAGACTTAGTCATCAAGAACCAGCCAGGAATCAAGGCAGAAATAGAAGCTAGAGCAGACAGGTTTTCTTCCTGCATTGACATGGGCCAAGAGTTGCTTGCCAGGAGCCATTATGCTGCCCAGGAAgtgaggaagatccggataatatcattactacaatcaagcaaccgagccca Alignment from Spaln_aa2Genome GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG tactaagttgggtggggccagacttcaagcttctctctgttctcttctagCGAAGTGTCCTCTGCAGACTTAGTCATCAAGAACCAGCCAGGAATCAAGGCAGAAATAGAAGCTAGAGCAGACAGGTTTTCTTCCTGCATTGACATGGGCCAAGAGTTGCTTGCCAGGAGCCATTATGCTGCCCAGGAAgtgaggaagatccggataatatcattactacaatcaagcaaccgagccca Alignment from Spaln_nt2Genome GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG tactaagttgggtggggccagacttcaagcttctctctgttctcttctagCGAAGTGTCCTCTGCAGACTTAGTCATCAAGAACCAGCCAGGAATCAAGGCAGAAATAGAAGCTAGAGCAGACAGGTTTTCTTCCTGCATTGACATGGGCCAAGAGTTGCTTGCCAGGAGCCATTATGCTGCCCAGGAAgtgaggaagatccggataatatcattactacaatcaagcaaccgagccca Alignment from Pairagon GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG tactaagttgggtggggccagacttcaagcttctctctgttctcttctagCGAAGTGTCCTCTGCAGACTTAGTCATCAAGAACCAGCCAGGAATCAAGGCAGAAATAGAAGCTAGAGCAGACAGGTTTTCTTCCTGCATTGACATGGGCCAAGAGTTGCTTGCCAGGAGCCATTATGCTGCCCAGGAAgtgaggaagatccggataatatcattactacaatcaagcaaccgagccca Alignment from Exonerate_protein2genome GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG tactaagttgggtggggccagacttcaagcttctctctgttctcttctagCGAAGTGTCCTCTGCAGACTTAGTCATCAAGAACCAGCCAGGAATCAAGGCAGAAATAGAAGCTAGAGCAGACAGGTTTTCTTCCTGCATTGACATGGGCCAAGAGTTGCTTGCCAGGAGCCATTATGCTGCCCAGGAAgtgaggaagatccggataatatcattactacaatcaagcaaccgagccca Alignment from Exonerate_coding2genome GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG tactaagttgggtggggccagacttcaagcttctctctgttctcttctagCGAAGTGTCCTCTGCAGACTTAGTCATCAAGAACCAGCCAGGAATCAAGGCAGAAATAGAAGCTAGAGCAGACAGGTTTTCTTCCTGCATTGACATGGGCCAAGAGTTGCTTGCCAGGAGCCATTATGCTGCCCAGGAAgtgaggaagatccggataatatcattactacaatcaagcaaccgagccca Alignment from GeneWise GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG tactaagttgggtggggccagacttcaagcttctctctgttctcttctagCGAAGTGTCCTCTGCAGACTTAGTCATCAAGAACCAGCCAGGAATCAAGGCAGAAATAGAAGCTAGAGCAGACAGGTTTTCTTCCTGCATTGACATGGGCCAAGAGTTGCTTGCCAGGAGCCATTATGCTGCCCAGGAAgtgaggaagatccggataatatcattactacaatcaagcaaccgagccca #### Ssh3_ID444_12 --> 1 - 2 Original Alignment aGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCag accttattcggggtggaaacacatggaccgctcacttccactctggacaggGCACAGGGCACACGTGTACTAGTCCACTGCAAGACAGGTGTCAGTCGGTCTGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCAT---CAAAAGCTACGGCCCATAGTCCACCCTAATCCCAGTTTTCTTCATCAGCTACAGACATATCAAGGCAGTTTGGCTGCTaggtgaccgtggtatttaaggttgtagctcaataaactgaggagtcaattgt Alignment from CESAR aGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCag accttattcggggtggaaacacatggaccgctcacttccactctggacaggGCACAGGGCACACGTGTACTAGTCCACTGCAAGACAGGTGTCAGTCGGTCTGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCAT---CAAAAGCTACGGCCCATAGTCCACCCTAATCCCAGTTTTCTTCATCAGCTACAGACATATCAAGGCAGTTTGGCTGCTaggtgaccgtggtatttaaggttgtagctcaataaactgaggagtcaattgt Alignment from Spaln_aa2Genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG accttattcggggtggaaacacatggaccgctcacttccactctggacagGGCACAGGGCACACGTGTACTAGTCCACTGCAAGACAGGTGTCAGTCGGTCTGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCAT---CAAAAGCTACGGCCCATAGTCCACCCTAATCCCAGTTTTCTTCATCAGCTACAGACATATCAAGGCAGTTTGGCTGCTAGgtgaccgtggtatttaaggttgtagctcaataaactgaggagtcaattgt Alignment from Spaln_nt2Genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG accttattcggggtggaaacacatggaccgctcacttccactctggacagGGCACAGGGCACACGTGTACTAGTCCACTGCAAGACAGGTGTCAGTCGGTCTGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCA---TCAAAAGCTACGGCCCATAGTCCACCCTAATCCCAGTTTTCTTCATCAGCTACAGACATATCAAGGCAGTTTGGCTGCTAGgtgaccgtggtatttaaggttgtagctcaataaactgaggagtcaattgt Alignment from Pairagon AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG accttattcggggtggaaacacatggaccgctcacttccactctggacagGGCACAGGGCACACGTGTACTAGTCCACTGCAAGACAGGTGTCAGTCGGTCTGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCAT---CAAAAGCTACGGCCCATAGTCCACCCTAATCCCAGTTTTCTTCATCAGCTACAGACATATCAAGGCAGTTTGGCTGCTAGgtgaccgtggtatttaaggttgtagctcaataaactgaggagtcaattgt Alignment from Exonerate_protein2genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG accttattcggggtggaaacacatggaccgctcacttccactctggacagGGCACAGGGCACACGTGTACTAGTCCACTGCAAGACAGGTGTCAGTCGGTCTGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCAT---CAAAAGCTACGGCCCATAGTCCACCCTAATCCCAGTTTTCTTCATCAGCTACAGACATATCAAGGCAGTTTGGCTGCTAGgtgaccgtggtatttaaggttgtagctcaataaactgaggagtcaattgt Alignment from Exonerate_coding2genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG accttattcggggtggaaacacatggaccgctcacttccactctggacagGGCACAGGGCACACGTGTACTAGTCCACTGCAAGACAGGTGTCAGTCGGTCTGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCAT---CAAAAGCTACGGCCCATAGTCCACCCTAATCCCAGTTTTCTTCATCAGCTACAGACATATCAAGGCAGTTTGGCTGCTAGgtgaccgtggtatttaaggttgtagctcaataaactgaggagtcaattgt Alignment from GeneWise AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG accttattcggggtggaaacacatggaccgctcacttccactctggacagGGCACAGGGCACACGTGTACTAGTCCACTGCAAGACAGGTGTCAGTCGGTCTGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCAT---CAAAAGCTACGGCCCATAGTCCACCCTAATCCCAGTTTTCTTCATCAGCTACAGACATATCAAGGCAGTTTGGCTGCTAGgtgaccgtggtatttaaggttgtagctcaataaactgaggagtcaattgt #### Ssh3_ID452_4 --> 0 - 2 Original Alignment GCAGCCCAGCTGGAGGCAGCCCGACCCCCCAGACTTCGCTACCTGCTGGTAGTATCCACGGGAGAAGAACTGAGTGAGGAGGCCATCCTGCTTGGGGTGGACTTCCCTGACAGCag gcgtgatgcccattgacggcccatttgctgaaaaccattattgttgacagGTTGCCCAATTGGAGGCAGCCCAACCTCCCAGAATTCAGTACCCACTGGTAGTATCCATGGGAGAAGAGCTGAGTGAAGAGGCTATTTTGCTT------GACTTCCCTGACAGCaggtcagtagccaataagaaaaggtttagttgaggctcaaatgtactggtga Alignment from CESAR GCAGCCCAGCTGGAGGCAGCCCGACCCCCCAGACTTCGCTACCTGCTGGTAGTATCCACGGGAGAAGAACTGAGTGAGGAGGCCATCCTGCTTGGGGTGGACTTCCCTGACAGCag gcgtgatgcccattgacggcccatttgctgaaaaccattattgttgacagGTTGCCCAATTGGAGGCAGCCCAACCTCCCAGAATTCAGTACCCACTGGTAGTATCCATGGGAGAAGAGCTGAGTGAAGAGGCTATTTTGCTT------GACTTCCCTGACAGCaggtcagtagccaataagaaaaggtttagttgaggctcaaatgtactggtga Alignment from Spaln_aa2Genome GCAGCCCAGCTGGAGGCAGCCCGACCCCCCAGACTTCGCTACCTGCTGGTAGTATCCACGGGAGAAGAACTGAGTGAGGAGGCCATCCTGCTTGGGGTGGACTTCCCTGACAGCAG gcgtgatgcccattgacggcccatttgctgaaaaccattattgttgacagGTTGCCCAATTGGAGGCAGCCCAACCTCCCAGAATTCAGTACCCACTGGTAGTATCCATGGGAGAAGAGCTGAGTGAAGAGGCTATTTTGCTT------GACTTCCCTGACAGCAGgtcagtagccaataagaaaaggtttagttgaggctcaaatgtactggtga Alignment from Spaln_nt2Genome GCAGCCCAGCTGGAGGCAGCCCGACCCCCCAGACTTCGCTACCTGCTGGTAGTATCCACGGGAGAAGAACTGAGTGAGGAGGCCATCCTGCTTGGGGTGGACTTCCCTGACAGCAG gcgtgatgcccattgacggcccatttgctgaaaaccattattgttgacagGTTGCCCAATTGGAGGCAGCCCAACCTCCCAGAATTCAGTACCCACTGGTAGTATCCATGGGAGAAGAGCTGAGTGAAGAGGCTATTTTGCTTG------ACTTCCCTGACAGCAGgtcagtagccaataagaaaaggtttagttgaggctcaaatgtactggtga Alignment from Pairagon GCAGCCCAGCTGGAGGCAGCCCGACCCCCCAGACTTCGCTACCTGCTGGTAGTATCCACGGGAGAAGAACTGAGTGAGGAGGCCATCCTGCTTGGGGTGGACTTCCCTGACAGCAG gcgtgatgcccattgacggcccatttgctgaaaaccattattgttgacagGTTGCCCAATTGGAGGCAGCCCAACCTCCCAGAATTCAGTACCCACTGGTAGTATCCATGGGAGAAGAGCTGAGTGAAGAGGCTATTTTGCTT------GACTTCCCTGACAGCAGgtcagtagccaataagaaaaggtttagttgaggctcaaatgtactggtga Alignment from Exonerate_protein2genome GCAGCCCAGCTGGAGGCAGCCCGACCCCCCAGACTTCGCTACCTGCTGGTAGTATCCACGGGAGAAGAACTGAGTGAGGAGGCCATCCTGCTTGGGGTGGACTTCCCTGACAGCAG gcgtgatgcccattgacggcccatttgctgaaaaccattattgttgacagGTTGCCCAATTGGAGGCAGCCCAACCTCCCAGAATTCAGTACCCACTGGTAGTATCCATGGGAGAAGAGCTGAGTGAAGAGGCTATTTTGCTT------GACTTCCCTGACAGCAGgtcagtagccaataagaaaaggtttagttgaggctcaaatgtactggtga Alignment from Exonerate_coding2genome GCAGCCCAGCTGGAGGCAGCCCGACCCCCCAGACTTCGCTACCTGCTGGTAGTATCCACGGGAGAAGAACTGAGTGAGGAGGCCATCCTGCTTGGGGTGGACTTCCCTGACAGCAG gcgtgatgcccattgacggcccatttgctgaaaaccattattgttgacagGTTGCCCAATTGGAGGCAGCCCAACCTCCCAGAATTCAGTACCCACTGGTAGTATCCATGGGAGAAGAGCTGAGTGAAGAGGCTATTTTGCTT------GACTTCCCTGACAGCAGgtcagtagccaataagaaaaggtttagttgaggctcaaatgtactggtga Alignment from GeneWise GCAGCCCAGCTGGAGGCAGCCCGACCCCCCAGACTTCGCTACCTGCTGGTAGTATCCACGGGAGAAGAACTGAGTGAGGAGGCCATCCTGCTTGGGGTGGACTTCCCTGACAGCAG gcgtgatgcccattgacggcccatttgctgaaaaccattattgttgacagGTTGCCCAATTGGAGGCAGCCCAACCTCCCAGAATTCAGTACCCACTGGTAGTATCCATGGGAGAAGAGCTGAGTGAAGAGGCTATTTTGCTT------GACTTCCCTGACAGCAGgtcagtagccaataagaaaaggtttagttgaggctcaaatgtactggtga #### Ssh3_ID454_2 --> 0 - 2 Original Alignment CAGGACCGAGTGGTAAGACGCAGAGGCCGG---CTCCAGCGCag atgattcttttctacttcttacctggcaccacgtgtcattctgctttcagGAAGACCGCGTGGTGAGACGAAGGGGTCGTCTCCTCCAGCGCaggtgatgactgcctggaatatctctccttctatttatggcttgtcaaagct Alignment from CESAR CAGGACCGAGTGGTAAGACGCAGAGGCCGGCTC---CAGCGCag atgattcttttctacttcttacctggcaccacgtgtcattctgctttcagGAAGACCGCGTGGTGAGACGAAGGGGTCGTCTCCTCCAGCGCaggtgatgactgcctggaatatctctccttctatttatggcttgtcaaagct Alignment from Spaln_aa2Genome CAGGACCGAGTGGTAAGACGCAGAGGCCGG---CTCCAGCGCAG atgattcttttctacttcttacctggcaccacgtgtcattctgctttcagGAAGACCGCGTGGTGAGACGAAGGGGTCGTCTCCTCCAGCGCAGgtgatgactgcctggaatatctctccttctatttatggcttgtcaaagct Alignment from Spaln_nt2Genome CAGGACCGAGTGGTAAGACGCAGAGGCCGGCTCC---AGCGCAG atgattcttttctacttcttacctggcaccacgtgtcattctgctttcagGAAGACCGCGTGGTGAGACGAAGGGGTCGTCTCCTCCAGCGCAGgtgatgactgcctggaatatctctccttctatttatggcttgtcaaagct Alignment from Pairagon CAGGACCGAGTGGTAAGACGCAGAGGCCG---GCTCCAGCGCAG atgattcttttctacttcttacctggcaccacgtgtcattctgctttcagGAAGACCGCGTGGTGAGACGAAGGGGTCGTCTCCTCCAGCGCAGgtgatgactgcctggaatatctctccttctatttatggcttgtcaaagct Alignment from Exonerate_protein2genome CAGGACCGAGTGGTAAGACGCAGAGGCCGG---CTCCAGCGCAG atgattcttttctacttcttacctggcaccacgtgtcattctgctttcagGAAGACCGCGTGGTGAGACGAAGGGGTCGTCTCCTCCAGCGCAGgtgatgactgcctggaatatctctccttctatttatggcttgtcaaagct Alignment from Exonerate_coding2genome atgattcttttctacttcttacctggcaccacgtgtcattctgctttcaggaagaccgcgtggtgagacgaaggggtcgtctcctccagcgcaggtgatgactgcctggaatatctctccttctatttatggcttgtcaaagct Alignment from GeneWise CAGGACCGAGTGGTAAGACGCAGAGGCCGGCTCCAGCGCAGG-- atgattcttttctacttcttacctggcaccacgtgtcattctgctttcagGAAGACCGCGTGGTGAGACGAAGGGGTCGTCTCCTCCAGCGCAGgtgatgactgcctggaatatctctccttctatttatggcttgtcaaagct #### Stambpl1_ID6901_8 --> 0 - 2 Original Alignment ACACACCCCACGCAAACGGCATTCCTGTCCAGTGTGGATCTCCACACTCACTGCTCCTACCAGCTTATGTTGCCAGAGGCCATTGCCATTGTGTGTTCCCCAAAGCATAAAga ctggacaccctagcaattcaatagaaacgttttctgtcattttattctagACACACCCTACACAATCAGCGTTTCTGTCCAGTCTGGATCTACACAGTCACTGTGCCTATCAGCTCATGTTGCCAGAGGCGAACACTATAGTGTGTTCCTCAAAGCATAGGgagtaagtggtgcaggacactatgccgtagtccacactgacaacaatttctg Alignment from CESAR ACACACCCCACGCAAACGGCATTCCTGTCCAGTGTGGATCTCCACACTCACTGCTCCTACCAGCTTATGTTGCCAGAGGCCATTGCCATTGTGTGTTCCCCAAAGCATAAAga ctggacaccctagcaattcaatagaaacgttttctgtcattttattctagACACACCCTACACAATCAGCGTTTCTGTCCAGTCTGGATCTACACAGTCACTGTGCCTATCAGCTCATGTTGCCAGAGGCGAACACTATAGTGTGTTCCTCAAAGCATAGGgagtaagtggtgcaggacactatgccgtagtccacactgacaacaatttctg Alignment from Spaln_aa2Genome ACACACCCCACGCAAACGGCATTCCTGTCCAGTGTGGATCTCCACACTCACTGCTCCTACCAGCTTATGTTGCCAGAGGCCATTGCCATTGTGTGTTCCCCAAAGCATAAAGA ctggacaccctagcaattcaatagaaacgttttctgtcattttattctagACACACCCTACACAATCAGCGTTTCTGTCCAGTCTGGATCTACACAGTCACTGTGCCTATCAGCTCATGTTGCCAGAGGCGAACACTATAGTGTGTTCCTCAAAGCATAGGGAgtaagtggtgcaggacactatgccgtagtccacactgacaacaatttctg Alignment from Spaln_nt2Genome ACACACCCCACGCAAACGGCATTCCTGTCCAGTGTGGATCTCCACACTCACTGCTCCTACCAGCTTATGTTGCCAGAGGCCATTGCCATTGTGTGTTCCCCAAAGCATAAAGA ctggacaccctagcaattcaatagaaacgttttctgtcattttattctagACACACCCTACACAATCAGCGTTTCTGTCCAGTCTGGATCTACACAGTCACTGTGCCTATCAGCTCATGTTGCCAGAGGCGAACACTATAGTGTGTTCCTCAAAGCATAGGGAgtaagtggtgcaggacactatgccgtagtccacactgacaacaatttctg Alignment from Pairagon ACACACCCCACGCAAACGGCATTCCTGTCCAGTGTGGATCTCCACACTCACTGCTCCTACCAGCTTATGTTGCCAGAGGCCATTGCCATTGTGTGTTCCCCAAAGCATAAAGA ctggacaccctagcaattcaatagaaacgttttctgtcattttattctagACACACCCTACACAATCAGCGTTTCTGTCCAGTCTGGATCTACACAGTCACTGTGCCTATCAGCTCATGTTGCCAGAGGCGAACACTATAGTGTGTTCCTCAAAGCATAGGGAgtaagtggtgcaggacactatgccgtagtccacactgacaacaatttctg Alignment from Exonerate_protein2genome ACACACCCCACGCAAACGGCATTCCTGTCCAGTGTGGATCTCCACACTCACTGCTCCTACCAGCTTATGTTGCCAGAGGCCATTGCCATTGTGTGTTCCCCAAAGCATAAAGA ctggacaccctagcaattcaatagaaacgttttctgtcattttattctagACACACCCTACACAATCAGCGTTTCTGTCCAGTCTGGATCTACACAGTCACTGTGCCTATCAGCTCATGTTGCCAGAGGCGAACACTATAGTGTGTTCCTCAAAGCATAGGGAgtaagtggtgcaggacactatgccgtagtccacactgacaacaatttctg Alignment from Exonerate_coding2genome ACACACCCCACGCAAACGGCATTCCTGTCCAGTGTGGATCTCCACACTCACTGCTCCTACCAGCTTATGTTGCCAGAGGCCATTGCCATTGTGTGTTCCCCAAAGCATAAAGA ctggacaccctagcaattcaatagaaacgttttctgtcattttattctagACACACCCTACACAATCAGCGTTTCTGTCCAGTCTGGATCTACACAGTCACTGTGCCTATCAGCTCATGTTGCCAGAGGCGAACACTATAGTGTGTTCCTCAAAGCATAGGGAgtaagtggtgcaggacactatgccgtagtccacactgacaacaatttctg Alignment from GeneWise ACACACCCCACGCAAACGGCATTCCTGTCCAGTGTGGATCTCCACACTCACTGCTCCTACCAGCTTATGTTGCCAGAGGCCATTGCCATTGTGTGTTCCCCAAAGCATAAAGA ctggacaccctagcaattcaatagaaacgttttctgtcattttattctagACACACCCTACACAATCAGCGTTTCTGTCCAGTCTGGATCTACACAGTCACTGTGCCTATCAGCTCATGTTGCCAGAGGCGAACACTATAGTGTGTTCCTCAAAGCATAGGGAgtaagtggtgcaggacactatgccgtagtccacactgacaacaatttctg #### Stip1_ID1989_12 --> 2 - 0 Original Alignment tcAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG atagagtgagagaagtgtagtggaaacaaaccacttctgctccactctagacAAAGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGATTATACAAAAGCGATGCAT------CAAAAGGCATTAGACCTGGACTCCTGTTGCAAGgtaagttactgctagcttgtatacagatgcgtgtttatgtgacctagggt Alignment from CESAR tcAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG atagagtgagagaagtgtagtggaaacaaaccacttctgctccactctagacAAAGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGATTATACAAAAGCGATG------CATCAAAAGGCATTAGACCTGGACTCCTGTTGCAAGgtaagttactgctagcttgtatacagatgcgtgtttatgtgacctagggt Alignment from Spaln_aa2Genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG atagagtgagagaagtgtagtggaaacaaaccacttctgctccactctagACAAAGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGATTATACAAAAGCGATG------CATCAAAAGGCATTAGACCTGGACTCCTGTTGCAAGgtaagttactgctagcttgtatacagatgcgtgtttatgtgacctagggt Alignment from Spaln_nt2Genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG atagagtgagagaagtgtagtggaaacaaaccacttctgctccactctagACAAAGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGATTATACAAAAGCGATGCAT------CAAAAGGCATTAGACCTGGACTCCTGTTGCAAGgtaagttactgctagcttgtatacagatgcgtgtttatgtgacctagggt Alignment from Pairagon TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG atagagtgagagaagtgtagtggaaacaaaccacttctgctccactctagACAAAGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGATTATACAAAAGCGATGCAT------CAAAAGGCATTAGACCTGGACTCCTGTTGCAAGgtaagttactgctagcttgtatacagatgcgtgtttatgtgacctagggt Alignment from Exonerate_protein2genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG atagagtgagagaagtgtagtggaaacaaaccacttctgctccactctagACAAAGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGATTATACAAAAGCGATG------CATCAAAAGGCATTAGACCTGGACTCCTGTTGCAAGgtaagttactgctagcttgtatacagatgcgtgtttatgtgacctagggt Alignment from Exonerate_coding2genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG atagagtgagagaagtgtagtggaaacaaaccacttctgctccactctagACAAAGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGATTATACAAAAGCGATG------CATCAAAAGGCATTAGACCTGGACTCCTGTTGCAAGgtaagttactgctagcttgtatacagatgcgtgtttatgtgacctagggt Alignment from GeneWise TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG atagagtgagagaagtgtagtggaaacaaaccacttctgctccactctagACAAAGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGATTATACAAAAGCGATG------CATCAAAAGGCATTAGACCTGGACTCCTGTTGCAAGgtaagttactgctagcttgtatacagatgcgtgtttatgtgacctagggt #### Stip1_ID1990_11 --> 0 - 1 Original Alignment GACTGTGAGGAGTGCATCCAGCTAGAGCCAACCTTCa caccatcacagggaacagtaacataaattttgatgttctcttccttgcagGACTGTGAGGAGTGTATCCAGCTAGAACCAACCTTCagtatgatttctccattattttgctatgattatgatttctgcaggggcaat Alignment from CESAR GACTGTGAGGAGTGCATCCAGCTAGAGCCAACCTTCa caccatcacagggaacagtaacataaattttgatgttctcttccttgcagGACTGTGAGGAGTGTATCCAGCTAGAACCAACCTTCagtatgatttctccattattttgctatgattatgatttctgcaggggcaat Alignment from Spaln_aa2Genome GACTGTGAGGAGTGCATCCAGCTAGAGCCAACCTTCA caccatcacagggaacagtaacataaattttgatgttctcttccttgcagGACTGTGAGGAGTGTATCCAGCTAGAACCAACCTTCAgtatgatttctccattattttgctatgattatgatttctgcaggggcaat Alignment from Spaln_nt2Genome GACTGTGAGGAGTGCATCCAGCTAGAGCCAACCTTCA caccatcacagggaacagtaacataaattttgatgttctcttccttgcagGACTGTGAGGAGTGTATCCAGCTAGAACCAACCTTCAgtatgatttctccattattttgctatgattatgatttctgcaggggcaat Alignment from Pairagon GACTGTGAGGAGTGCATCCAGCTAGAGCCAACCTTCA caccatcacagggaacagtaacataaattttgatgttctcttccttgcagGACTGTGAGGAGTGTATCCAGCTAGAACCAACCTTCAgtatgatttctccattattttgctatgattatgatttctgcaggggcaat Alignment from Exonerate_protein2genome GACTGTGAGGAGTGCATCCAGCTAGAGCCAACCTTCA caccatcacagggaacagtaacataaattttgatgttctcttccttgcagGACTGTGAGGAGTGTATCCAGCTAGAACCAACCTTCAgtatgatttctccattattttgctatgattatgatttctgcaggggcaat Alignment from Exonerate_coding2genome GACTGTGAGGAGTGCATCCAGCTAGAGCCAACCTTCA caccatcacagggaacagtaacataaattttgatgttctcttccttgcagGACTGTGAGGAGTGTATCCAGCTAGAACCAACCTTCAgtatgatttctccattattttgctatgattatgatttctgcaggggcaat Alignment from GeneWise GACTGTGAGGAGTGCATCCAGCTAGAGCCAACCTTCA caccatcacagggaacagtaacataaattttgatgttctcttccttgcagGACTGTGAGGAGTGTATCCAGCTAGAACCAACCTTCAgtatgatttctccattattttgctatgattatgatttctgcaggggcaat #### Stip1_ID1993_8 --> 1 - 0 Original Alignment aGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG ggatgctggaacttgcttttaacactctaatcatgttctcttctccccagaGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtaattatgcaaagattgcgcctctcccaaagcccttcacatggccagag Alignment from CESAR aGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG ggatgctggaacttgcttttaacactctaatcatgttctcttctccccagaGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtaattatgcaaagattgcgcctctcccaaagcccttcacatggccagag Alignment from Spaln_aa2Genome AGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG ggatgctggaacttgcttttaacactctaatcatgttctcttctccccagAGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtaattatgcaaagattgcgcctctcccaaagcccttcacatggccagag Alignment from Spaln_nt2Genome AGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG ggatgctggaacttgcttttaacactctaatcatgttctcttctccccagAGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtaattatgcaaagattgcgcctctcccaaagcccttcacatggccagag Alignment from Pairagon AGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG ggatgctggaacttgcttttaacactctaatcatgttctcttctccccagAGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtaattatgcaaagattgcgcctctcccaaagcccttcacatggccagag Alignment from Exonerate_protein2genome AGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG ggatgctggaacttgcttttaacactctaatcatgttctcttctccccagAGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtaattatgcaaagattgcgcctctcccaaagcccttcacatggccagag Alignment from Exonerate_coding2genome AGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG ggatgctggaacttgcttttaacactctaatcatgttctcttctccccagAGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtaattatgcaaagattgcgcctctcccaaagcccttcacatggccagag Alignment from GeneWise AGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG ggatgctggaacttgcttttaacactctaatcatgttctcttctccccagAGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtaattatgcaaagattgcgcctctcccaaagcccttcacatggccagag #### Stip1_ID1999_2 --> 0 - 0 Original Alignment GTGAATGAGCTAAAGGAGAAGGGCAATAAGGCCCTGAGTGCTGGGAACATTGATGATGCCTTACAGTGCTACTCTGAGGCAATTAAACTAGATCCCCAGAACCATGTGCTCTACAGCAATCGCTCTGCAGCCTACGCCAAGAAAGGAGACTACCAGAAGGCCTATGAGGACGGCTGCAAGACTGTTGACCTGAAGCCTGACTGGGGCAAG gatagaagtctgtgcggtagagttgtatttgtctcatttgtttccatcagGTGAATGAGCTAAAGGAAAAGGGCAATAAGGCCCTCAGTGTAGGAAACATTGATGATGCTTTACATTGTTACTCAGAAGCAGCCAAACTGGACCCTCAGAACCATGTGCTGTACAGCAATCACTCTGCAACCTATACCAAGAAAGGAGATTACCAGAAGGGCTATGAGGAGGGCTGCAAGACAGTGGTCCTGCGCCCTGATTGGGGCAAAgtaaacttatcacttcctaattggctgtctgactataagttacactgctt Alignment from CESAR GTGAATGAGCTAAAGGAGAAGGGCAATAAGGCCCTGAGTGCTGGGAACATTGATGATGCCTTACAGTGCTACTCTGAGGCAATTAAACTAGATCCCCAGAACCATGTGCTCTACAGCAATCGCTCTGCAGCCTACGCCAAGAAAGGAGACTACCAGAAGGCCTATGAGGACGGCTGCAAGACTGTTGACCTGAAGCCTGACTGGGGCAAG gatagaagtctgtgcggtagagttgtatttgtctcatttgtttccatcagGTGAATGAGCTAAAGGAAAAGGGCAATAAGGCCCTCAGTGTAGGAAACATTGATGATGCTTTACATTGTTACTCAGAAGCAGCCAAACTGGACCCTCAGAACCATGTGCTGTACAGCAATCACTCTGCAACCTATACCAAGAAAGGAGATTACCAGAAGGGCTATGAGGAGGGCTGCAAGACAGTGGTCCTGCGCCCTGATTGGGGCAAAgtaaacttatcacttcctaattggctgtctgactataagttacactgctt Alignment from Spaln_aa2Genome GTGAATGAGCTAAAGGAGAAGGGCAATAAGGCCCTGAGTGCTGGGAACATTGATGATGCCTTACAGTGCTACTCTGAGGCAATTAAACTAGATCCCCAGAACCATGTGCTCTACAGCAATCGCTCTGCAGCCTACGCCAAGAAAGGAGACTACCAGAAGGCCTATGAGGACGGCTGCAAGACTGTTGACCTGAAGCCTGACTGGGGCAAG gatagaagtctgtgcggtagagttgtatttgtctcatttgtttccatcagGTGAATGAGCTAAAGGAAAAGGGCAATAAGGCCCTCAGTGTAGGAAACATTGATGATGCTTTACATTGTTACTCAGAAGCAGCCAAACTGGACCCTCAGAACCATGTGCTGTACAGCAATCACTCTGCAACCTATACCAAGAAAGGAGATTACCAGAAGGGCTATGAGGAGGGCTGCAAGACAGTGGTCCTGCGCCCTGATTGGGGCAAAgtaaacttatcacttcctaattggctgtctgactataagttacactgctt Alignment from Spaln_nt2Genome GTGAATGAGCTAAAGGAGAAGGGCAATAAGGCCCTGAGTGCTGGGAACATTGATGATGCCTTACAGTGCTACTCTGAGGCAATTAAACTAGATCCCCAGAACCATGTGCTCTACAGCAATCGCTCTGCAGCCTACGCCAAGAAAGGAGACTACCAGAAGGCCTATGAGGACGGCTGCAAGACTGTTGACCTGAAGCCTGACTGGGGCAAG gatagaagtctgtgcggtagagttgtatttgtctcatttgtttccatcagGTGAATGAGCTAAAGGAAAAGGGCAATAAGGCCCTCAGTGTAGGAAACATTGATGATGCTTTACATTGTTACTCAGAAGCAGCCAAACTGGACCCTCAGAACCATGTGCTGTACAGCAATCACTCTGCAACCTATACCAAGAAAGGAGATTACCAGAAGGGCTATGAGGAGGGCTGCAAGACAGTGGTCCTGCGCCCTGATTGGGGCAAAgtaaacttatcacttcctaattggctgtctgactataagttacactgctt Alignment from Pairagon GAGCAGGTGAATGAGCTAAAGGAGAAGGGCAATAAGGCCCTGAGTGCTGGGAACATTGATGATGCCTTACAGTGCTACTCTGAGGCAATTAAACTAGATCCCCAGAACCATGTGCTCTACAGCAATCGCTCTGCAGCCTACGCCAAGAAAGGAGACTACCAGAAGGCCTATGAGGACGGCTGCAAGACTGTTGACCTGAAGCCTGACTGGGGCAAG gatagaagtctgtgcggtagagttgtatttgtctcatttgtttcCATCAGGTGAATGAGCTAAAGGAAAAGGGCAATAAGGCCCTCAGTGTAGGAAACATTGATGATGCTTTACATTGTTACTCAGAAGCAGCCAAACTGGACCCTCAGAACCATGTGCTGTACAGCAATCACTCTGCAACCTATACCAAGAAAGGAGATTACCAGAAGGGCTATGAGGAGGGCTGCAAGACAGTGGTCCTGCGCCCTGATTGGGGCAAAgtaaacttatcacttcctaattggctgtctgactataagttacactgctt Alignment from Exonerate_protein2genome GAGCAGGTGAATGAGCTAAAGGAGAAGGGCAATAAGGCCCTGAGTGCTGGGAACATTGATGATGCCTTACAGTGCTACTCTGAGGCAATTAAACTAGATCCCCAGAACCATGTGCTCTACAGCAATCGCTCTGCAGCCTACGCCAAGAAAGGAGACTACCAGAAGGCCTATGAGGACGGCTGCAAGACTGTTGACCTGAAGCCTGACTGGGGCAAG gatagaagtctgtgcggtagagttgtatttgtctcatttgtttcCATCAGGTGAATGAGCTAAAGGAAAAGGGCAATAAGGCCCTCAGTGTAGGAAACATTGATGATGCTTTACATTGTTACTCAGAAGCAGCCAAACTGGACCCTCAGAACCATGTGCTGTACAGCAATCACTCTGCAACCTATACCAAGAAAGGAGATTACCAGAAGGGCTATGAGGAGGGCTGCAAGACAGTGGTCCTGCGCCCTGATTGGGGCAAAgtaaacttatcacttcctaattggctgtctgactataagttacactgctt Alignment from Exonerate_coding2genome GAGCAGGTGAATGAGCTAAAGGAGAAGGGCAATAAGGCCCTGAGTGCTGGGAACATTGATGATGCCTTACAGTGCTACTCTGAGGCAATTAAACTAGATCCCCAGAACCATGTGCTCTACAGCAATCGCTCTGCAGCCTACGCCAAGAAAGGAGACTACCAGAAGGCCTATGAGGACGGCTGCAAGACTGTTGACCTGAAGCCTGACTGGGGCAAG gatagaagtctgtgcggtagagttgtatttgtctcatttgtttcCATCAGGTGAATGAGCTAAAGGAAAAGGGCAATAAGGCCCTCAGTGTAGGAAACATTGATGATGCTTTACATTGTTACTCAGAAGCAGCCAAACTGGACCCTCAGAACCATGTGCTGTACAGCAATCACTCTGCAACCTATACCAAGAAAGGAGATTACCAGAAGGGCTATGAGGAGGGCTGCAAGACAGTGGTCCTGCGCCCTGATTGGGGCAAAgtaaacttatcacttcctaattggctgtctgactataagttacactgctt Alignment from GeneWise GAGCAGGTGAATGAGCTAAAGGAGAAGGGCAATAAGGCCCTGAGTGCTGGGAACATTGATGATGCCTTACAGTGCTACTCTGAGGCAATTAAACTAGATCCCCAGAACCATGTGCTCTACAGCAATCGCTCTGCAGCCTACGCCAAGAAAGGAGACTACCAGAAGGCCTATGAGGACGGCTGCAAGACTGTTGACCTGAAGCCTGACTGGGGCAAG gatagaagtctgtgcggtagagttgtatttgtctcatttgtttcCATCAGGTGAATGAGCTAAAGGAAAAGGGCAATAAGGCCCTCAGTGTAGGAAACATTGATGATGCTTTACATTGTTACTCAGAAGCAGCCAAACTGGACCCTCAGAACCATGTGCTGTACAGCAATCACTCTGCAACCTATACCAAGAAAGGAGATTACCAGAAGGGCTATGAGGAGGGCTGCAAGACAGTGGTCCTGCGCCCTGATTGGGGCAAAgtaaacttatcacttcctaattggctgtctgactataagttacactgctt #### Stx3_ID3298_8 --> 0 - 0 Original Alignment ATCATTGACTCCCAGATTTCCAAGCAAGCCCTCAGCGAGATTGAGGGTCGGCACAAGGACATCGTAAGGCTGGAGAGCAGCATCAAGGAGCTCCATGACATGTTTATGGACATCGCCATGCTGGTGGAAAATCAG ttttgctatggatggcagcccatgatcttgtttctctcttgtcattgcagATTATTGACTCACAGATTTCCAAGCAGGCCCTGAGTGAGATTGAAGGCAGACATAAAGACATTGTAAGGCTTGAGAGCAGCATCAAGGTGCTCCATGAC---TTTATGGACATTGCCACACTGGTAGAAAATCAGgtaaggtgagcgtgggtaaacaagcactccaactaaagtagctgcaccct Alignment from CESAR ATCATTGACTCCCAGATTTCCAAGCAAGCCCTCAGCGAGATTGAGGGTCGGCACAAGGACATCGTAAGGCTGGAGAGCAGCATCAAGGAGCTCCATGACATGTTTATGGACATCGCCATGCTGGTGGAAAATCAG ttttgctatggatggcagcccatgatcttgtttctctcttgtcattgcagATTATTGACTCACAGATTTCCAAGCAGGCCCTGAGTGAGATTGAAGGCAGACATAAAGACATTGTAAGGCTTGAGAGCAGCATCAAGGTGCTCCATGAC---TTTATGGACATTGCCACACTGGTAGAAAATCAGgtaaggtgagcgtgggtaaacaagcactccaactaaagtagctgcaccct Alignment from Spaln_aa2Genome ATCATTGACTCCCAGATTTCCAAGCAAGCCCTCAGCGAGATTGAGGGTCGGCACAAGGACATCGTAAGGCTGGAGAGCAGCATCAAGGAGCTCCATGACATGTTTATGGACATCGCCATGCTGGTGGAAAATCAG ttttgctatggatggcagcccatgatcttgtttctctcttgtcattgcagATTATTGACTCACAGATTTCCAAGCAGGCCCTGAGTGAGATTGAAGGCAGACATAAAGACATTGTAAGGCTTGAGAGCAGCATCAAGGTGCTCCATGAC---TTTATGGACATTGCCACACTGGTAGAAAATCAGgtaaggtgagcgtgggtaaacaagcactccaactaaagtagctgcaccct Alignment from Spaln_nt2Genome ATCATTGACTCCCAGATTTCCAAGCAAGCCCTCAGCGAGATTGAGGGTCGGCACAAGGACATCGTAAGGCTGGAGAGCAGCATCAAGGAGCTCCATGACATGTTTATGGACATCGCCATGCTGGTGGAAAATCAG ttttgctatggatggcagcccatgatcttgtttctctcttgtcattgcagATTATTGACTCACAGATTTCCAAGCAGGCCCTGAGTGAGATTGAAGGCAGACATAAAGACATTGTAAGGCTTGAGAGCAGCATCAAGGTGCTCCATGAC---TTTATGGACATTGCCACACTGGTAGAAAATCAGgtaaggtgagcgtgggtaaacaagcactccaactaaagtagctgcaccct Alignment from Pairagon ATCATTGACTCCCAGATTTCCAAGCAAGCCCTCAGCGAGATTGAGGGTCGGCACAAGGACATCGTAAGGCTGGAGAGCAGCATCAAGGAGCTCCATGACATGTTTATGGACATCGCCATGCTGGTGGAAAATCAG ttttgctatggatggcagcccatgatcttgtttctctcttgtcattgcagATTATTGACTCACAGATTTCCAAGCAGGCCCTGAGTGAGATTGAAGGCAGACATAAAGACATTGTAAGGCTTGAGAGCAGCATCAAGGTGCTCCATGAC---TTTATGGACATTGCCACACTGGTAGAAAATCAGgtaaggtgagcgtgggtaaacaagcactccaactaaagtagctgcaccct Alignment from Exonerate_protein2genome ATCATTGACTCCCAGATTTCCAAGCAAGCCCTCAGCGAGATTGAGGGTCGGCACAAGGACATCGTAAGGCTGGAGAGCAGCATCAAGGAGCTCCATGACATGTTTATGGACATCGCCATGCTGGTGGAAAATCAG ttttgctatggatggcagcccatgatcttgtttctctcttgtcattgcagATTATTGACTCACAGATTTCCAAGCAGGCCCTGAGTGAGATTGAAGGCAGACATAAAGACATTGTAAGGCTTGAGAGCAGCATCAAGGTGCTCCATGAC---TTTATGGACATTGCCACACTGGTAGAAAATCAGgtaaggtgagcgtgggtaaacaagcactccaactaaagtagctgcaccct Alignment from Exonerate_coding2genome ATCATTGACTCCCAGATTTCCAAGCAAGCCCTCAGCGAGATTGAGGGTCGGCACAAGGACATCGTAAGGCTGGAGAGCAGCATCAAGGAGCTCCATGACATGTTTATGGACATCGCCATGCTGGTGGAAAATCAG ttttgctatggatggcagcccatgatcttgtttctctcttgtcattgcagATTATTGACTCACAGATTTCCAAGCAGGCCCTGAGTGAGATTGAAGGCAGACATAAAGACATTGTAAGGCTTGAGAGCAGCATCAAGGTGCTCCATGAC---TTTATGGACATTGCCACACTGGTAGAAAATCAGgtaaggtgagcgtgggtaaacaagcactccaactaaagtagctgcaccct Alignment from GeneWise ATCATTGACTCCCAGATTTCCAAGCAAGCCCTCAGCGAGATTGAGGGTCGGCACAAGGACATCGTAAGGCTGGAGAGCAGCATCAAGGAGCTCCATGACATGTTTATGGACATCGCCATGCTGGTGGAAAATCAG ttttgctatggatggcagcccatgatcttgtttctctcttgtcattgcagATTATTGACTCACAGATTTCCAAGCAGGCCCTGAGTGAGATTGAAGGCAGACATAAAGACATTGTAAGGCTTGAGAGCAGCATCAAGGTGCTCCATGAC---TTTATGGACATTGCCACACTGGTAGAAAATCAGgtaaggtgagcgtgggtaaacaagcactccaactaaagtagctgcaccct #### Stx3_ID3299_7 --> 2 - 0 Original Alignment ctGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG ccagactctccttcttcctaaattttgtcccctccccctttctcttttagctGGCAAGAAGACAACAGATGAAGAGCTAGAGGAGATGTTAGAGAGTGGTAATCCAGCCATCTTCACTTCTGGGgtgagttacatatgtgcttggttatagtccaagtatattgccatggacca Alignment from CESAR ctGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG ccagactctccttcttcctaaattttgtcccctccccctttctcttttagctGGCAAGAAGACAACAGATGAAGAGCTAGAGGAGATGTTAGAGAGTGGTAATCCAGCCATCTTCACTTCTGGGgtgagttacatatgtgcttggttatagtccaagtatattgccatggacca Alignment from Spaln_aa2Genome CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG ccagactctccttcttcctaaattttgtcccctccccctttctcttttagCTGGCAAGAAGACAACAGATGAAGAGCTAGAGGAGATGTTAGAGAGTGGTAATCCAGCCATCTTCACTTCTGGGgtgagttacatatgtgcttggttatagtccaagtatattgccatggacca Alignment from Spaln_nt2Genome CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG ccagactctccttcttcctaaattttgtcccctccccctttctcttttagCTGGCAAGAAGACAACAGATGAAGAGCTAGAGGAGATGTTAGAGAGTGGTAATCCAGCCATCTTCACTTCTGGGgtgagttacatatgtgcttggttatagtccaagtatattgccatggacca Alignment from Pairagon CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG ccagactctccttcttcctaaattttgtcccctccccctttctcttttagCTGGCAAGAAGACAACAGATGAAGAGCTAGAGGAGATGTTAGAGAGTGGTAATCCAGCCATCTTCACTTCTGGGgtgagttacatatgtgcttggttatagtccaagtatattgccatggacca Alignment from Exonerate_protein2genome CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG ccagactctccttcttcctaaattttgtcccctccccctttctcttttagCTGGCAAGAAGACAACAGATGAAGAGCTAGAGGAGATGTTAGAGAGTGGTAATCCAGCCATCTTCACTTCTGGGgtgagttacatatgtgcttggttatagtccaagtatattgccatggacca Alignment from Exonerate_coding2genome CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG ccagactctccttcttcctaaattttgtcccctccccctttctcttttagCTGGCAAGAAGACAACAGATGAAGAGCTAGAGGAGATGTTAGAGAGTGGTAATCCAGCCATCTTCACTTCTGGGgtgagttacatatgtgcttggttatagtccaagtatattgccatggacca Alignment from GeneWise CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG ccagactctccttcttcctaaattttgtcccctccccctttctcttttagCTGGCAAGAAGACAACAGATGAAGAGCTAGAGGAGATGTTAGAGAGTGGTAATCCAGCCATCTTCACTTCTGGGgtgagttacatatgtgcttggttatagtccaagtatattgccatggacca #### Stx3_ID3304_2 --> 0 - 0 Original Alignment AAGCAGCTGACGCAGGATGATGACACGGACGAGGTTGAGATTGCCATTGACAACACAGCCTTCATGGACGAGTTCTTCTCTGAG ttttacccaatgtggtttctgaaaaaacacaggtattgctgttgctgtagAAGCAGCTGATACAAGATGATGATACAGATGAAGTGGAAATAGCCATTGACAACACAGTATTTATGGAAGAATTCTTCTCTCAGgtaagtgaccttacattctttttgtttttgtctctccatttttgtttggt Alignment from CESAR AAGCAGCTGACGCAGGATGATGACACGGACGAGGTTGAGATTGCCATTGACAACACAGCCTTCATGGACGAGTTCTTCTCTGAG ttttacccaatgtggtttctgaaaaaacacaggtattgctgttgctgtagAAGCAGCTGATACAAGATGATGATACAGATGAAGTGGAAATAGCCATTGACAACACAGTATTTATGGAAGAATTCTTCTCTCAGgtaagtgaccttacattctttttgtttttgtctctccatttttgtttggt Alignment from Spaln_aa2Genome AAGCAGCTGACGCAGGATGATGACACGGACGAGGTTGAGATTGCCATTGACAACACAGCCTTCATGGACGAGTTCTTCTCTGAG ttttacccaatgtggtttctgaaaaaacacaggtattgctgttgctgtagAAGCAGCTGATACAAGATGATGATACAGATGAAGTGGAAATAGCCATTGACAACACAGTATTTATGGAAGAATTCTTCTCTCAGgtaagtgaccttacattctttttgtttttgtctctccatttttgtttggt Alignment from Spaln_nt2Genome AAGCAGCTGACGCAGGATGATGACACGGACGAGGTTGAGATTGCCATTGACAACACAGCCTTCATGGACGAGTTCTTCTCTGAG ttttacccaatgtggtttctgaaaaaacacaggtattgctgttgctgtagAAGCAGCTGATACAAGATGATGATACAGATGAAGTGGAAATAGCCATTGACAACACAGTATTTATGGAAGAATTCTTCTCTCAGgtaagtgaccttacattctttttgtttttgtctctccatttttgtttggt Alignment from Pairagon AAGCAGCTGACGCAGGATGATGACACGGACGAGGTTGAGATTGCCATTGACAACACAGCCTTCATGGACGAGTTCTTCTCTGAG ttttacccaatgtggtttctgaaaaaacacaggtattgctgttgctgtagAAGCAGCTGATACAAGATGATGATACAGATGAAGTGGAAATAGCCATTGACAACACAGTATTTATGGAAGAATTCTTCTCTCAGgtaagtgaccttacattctttttgtttttgtctctccatttttgtttggt Alignment from Exonerate_protein2genome AAGCAGCTGACGCAGGATGATGACACGGACGAGGTTGAGATTGCCATTGACAACACAGCCTTCATGGACGAGTTCTTCTCTGAG ttttacccaatgtggtttctgaaaaaacacaggtattgctgttgctgtagAAGCAGCTGATACAAGATGATGATACAGATGAAGTGGAAATAGCCATTGACAACACAGTATTTATGGAAGAATTCTTCTCTCAGgtaagtgaccttacattctttttgtttttgtctctccatttttgtttggt Alignment from Exonerate_coding2genome AAGCAGCTGACGCAGGATGATGACACGGACGAGGTTGAGATTGCCATTGACAACACAGCCTTCATGGACGAGTTCTTCTCTGAG ttttacccaatgtggtttctgaaaaaacacaggtattgctgttgctgtagAAGCAGCTGATACAAGATGATGATACAGATGAAGTGGAAATAGCCATTGACAACACAGTATTTATGGAAGAATTCTTCTCTCAGgtaagtgaccttacattctttttgtttttgtctctccatttttgtttggt Alignment from GeneWise AAGCAGCTGACGCAGGATGATGACACGGACGAGGTTGAGATTGCCATTGACAACACAGCCTTCATGGACGAGTTCTTCTCTGAG ttttacccaatgtggtttctgaaaaaacacaggtattgctgttgctgtagAAGCAGCTGATACAAGATGATGATACAGATGAAGTGGAAATAGCCATTGACAACACAGTATTTATGGAAGAATTCTTCTCTCAGgtaagtgaccttacattctttttgtttttgtctctccatttttgtttggt #### Stx5a_ID2337_9 --> 0 - 2 Original Alignment GATTCCTACATCCAGAGTCGGGCAGACACCATGCAGAACATTGAGTCTACAATCGTTGAGCTGGGCTCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAGGAGGAAACGATTCAGag tcttagagatctggaagtcttgatctctaataggacttttatttctaaagGATTCCTACATCCATAGTCGTGCAGACACCATGCAGAACATTGAGTCAACAACTGTTGAGCTGGCATCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAAGAGGAATCAATCCAGaggtgagtcctccttgaacaaagacaaacaaaaccagtttagtaggttgcat Alignment from CESAR GATTCCTACATCCAGAGTCGGGCAGACACCATGCAGAACATTGAGTCTACAATCGTTGAGCTGGGCTCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAGGAGGAAACGATTCAGag tcttagagatctggaagtcttgatctctaataggacttttatttctaaagGATTCCTACATCCATAGTCGTGCAGACACCATGCAGAACATTGAGTCAACAACTGTTGAGCTGGCATCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAAGAGGAATCAATCCAGaggtgagtcctccttgaacaaagacaaacaaaaccagtttagtaggttgcat Alignment from Spaln_aa2Genome GATTCCTACATCCAGAGTCGGGCAGACACCATGCAGAACATTGAGTCTACAATCGTTGAGCTGGGCTCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAGGAGGAAACGATTCAGAG tcttagagatctggaagtcttgatctctaataggacttttatttctaaagGATTCCTACATCCATAGTCGTGCAGACACCATGCAGAACATTGAGTCAACAACTGTTGAGCTGGCATCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAAGAGGAATCAATCCAGAGgtgagtcctccttgaacaaagacaaacaaaaccagtttagtaggttgcat Alignment from Spaln_nt2Genome GATTCCTACATCCAGAGTCGGGCAGACACCATGCAGAACATTGAGTCTACAATCGTTGAGCTGGGCTCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAGGAGGAAACGATTCAGAG tcttagagatctggaagtcttgatctctaataggacttttatttctaaagGATTCCTACATCCATAGTCGTGCAGACACCATGCAGAACATTGAGTCAACAACTGTTGAGCTGGCATCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAAGAGGAATCAATCCAGAGgtgagtcctccttgaacaaagacaaacaaaaccagtttagtaggttgcat Alignment from Pairagon GATTCCTACATCCAGAGTCGGGCAGACACCATGCAGAACATTGAGTCTACAATCGTTGAGCTGGGCTCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAGGAGGAAACGATTCAGAG tcttagagatctggaagtcttgatctctaataggacttttatttctaaagGATTCCTACATCCATAGTCGTGCAGACACCATGCAGAACATTGAGTCAACAACTGTTGAGCTGGCATCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAAGAGGAATCAATCCAGAGgtgagtcctccttgaacaaagacaaacaaaaccagtttagtaggttgcat Alignment from Exonerate_protein2genome GATTCCTACATCCAGAGTCGGGCAGACACCATGCAGAACATTGAGTCTACAATCGTTGAGCTGGGCTCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAGGAGGAAACGATTCAGAG tcttagagatctggaagtcttgatctctaataggacttttatttctaaagGATTCCTACATCCATAGTCGTGCAGACACCATGCAGAACATTGAGTCAACAACTGTTGAGCTGGCATCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAAGAGGAATCAATCCAGAGgtgagtcctccttgaacaaagacaaacaaaaccagtttagtaggttgcat Alignment from Exonerate_coding2genome GATTCCTACATCCAGAGTCGGGCAGACACCATGCAGAACATTGAGTCTACAATCGTTGAGCTGGGCTCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAGGAGGAAACGATTCAGAG tcttagagatctggaagtcttgatctctaataggacttttatttctaaagGATTCCTACATCCATAGTCGTGCAGACACCATGCAGAACATTGAGTCAACAACTGTTGAGCTGGCATCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAAGAGGAATCAATCCAGAGgtgagtcctccttgaacaaagacaaacaaaaccagtttagtaggttgcat Alignment from GeneWise GATTCCTACATCCAGAGTCGGGCAGACACCATGCAGAACATTGAGTCTACAATCGTTGAGCTGGGCTCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAGGAGGAAACGATTCAGAG tcttagagatctggaagtcttgatctctaataggacttttatttctaaagGATTCCTACATCCATAGTCGTGCAGACACCATGCAGAACATTGAGTCAACAACTGTTGAGCTGGCATCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAAGAGGAATCAATCCAGAGgtgagtcctccttgaacaaagacaaacaaaaccagtttagtaggttgcat #### Suv420h1_ID147_9 --> 1 - 1 Original Alignment aCGGGGAACTGGTGCTTTTAAATCACGAGTAGGACTGCCTGCGCCTGCTCCTGTTATCAATAGCAAATACGGACTTAGAGAAACAGATAAACGCTTAAATAGGCTTAAAAAGTTAGGTGACAGCAGCAAAAACTCAGACAGTCAGTCTGTCAGCTCTAACACAGATGCAGACACCACTCAGGAAAAAGACAATGCAa cggccattttgccttttctctgttttgcaatgactgcttcaactttccagaCGCGGAACTGGTGCCTTTAAATCACGAGTAGGAGTGCTTGCACCTGCTCCAGTTATCAATAGCAAATATGGACTTGGAGAAACAGATAAGCACTTAAATAGGCTTAAAAAGTTAGGTGAC---AGCAAAAACTCTGATAGTCAGTCTGTTAGCTCTAACACAGATGCTGACACCACTCAAGAAAAAGATAATGCAagtatgtgatcagcagcaccaacatgacagtagtgcgactcaagaacttgt Alignment from CESAR aCGGGGAACTGGTGCTTTTAAATCACGAGTAGGACTGCCTGCGCCTGCTCCTGTTATCAATAGCAAATACGGACTTAGAGAAACAGATAAACGCTTAAATAGGCTTAAAAAGTTAGGTGACAGCAGCAAAAACTCAGACAGTCAGTCTGTCAGCTCTAACACAGATGCAGACACCACTCAGGAAAAAGACAATGCAa cggccattttgccttttctctgttttgcaatgactgcttcaactttccagaCGCGGAACTGGTGCCTTTAAATCACGAGTAGGAGTGCTTGCACCTGCTCCAGTTATCAATAGCAAATATGGACTTGGAGAAACAGATAAGCACTTAAATAGGCTTAAAAAGTTAGGTGAC---AGCAAAAACTCTGATAGTCAGTCTGTTAGCTCTAACACAGATGCTGACACCACTCAAGAAAAAGATAATGCAagtatgtgatcagcagcaccaacatgacagtagtgcgactcaagaacttgt Alignment from Spaln_aa2Genome ACGGGGAACTGGTGCTTTTAAATCACGAGTAGGACTGCCTGCGCCTGCTCCTGTTATCAATAGCAAATACGGACTTAGAGAAACAGATAAACGCTTAAATAGGCTTAAAAAGTTAGGTGACAGCAGCAAAAACTCAGACAGTCAGTCTGTCAGCTCTAACACAGATGCAGACACCACTCAGGAAAAAGACAATGCAA cggccattttgccttttctctgttttgcaatgactgcttcaactttccagACGCGGAACTGGTGCCTTTAAATCACGAGTAGGAGTGCTTGCACCTGCTCCAGTTATCAATAGCAAATATGGACTTGGAGAAACAGATAAGCACTTAAATAGGCTTAAAAAGTTAGGTGAC---AGCAAAAACTCTGATAGTCAGTCTGTTAGCTCTAACACAGATGCTGACACCACTCAAGAAAAAGATAATGCAAgtatgtgatcagcagcaccaacatgacagtagtgcgactcaagaacttgt Alignment from Spaln_nt2Genome ACGGGGAACTGGTGCTTTTAAATCACGAGTAGGACTGCCTGCGCCTGCTCCTGTTATCAATAGCAAATACGGACTTAGAGAAACAGATAAACGCTTAAATAGGCTTAAAAAGTTAGGTGACAGCAGCAAAAACTCAGACAGTCAGTCTGTCAGCTCTAACACAGATGCAGACACCACTCAGGAAAAAGACAATGCAA cggccattttgccttttctctgttttgcaatgactgcttcaactttccagACGCGGAACTGGTGCCTTTAAATCACGAGTAGGAGTGCTTGCACCTGCTCCAGTTATCAATAGCAAATATGGACTTGGAGAAACAGATAAGCACTTAAATAGGCTTAAAAAGTTAGGTGA---CAGCAAAAACTCTGATAGTCAGTCTGTTAGCTCTAACACAGATGCTGACACCACTCAAGAAAAAGATAATGCAAgtatgtgatcagcagcaccaacatgacagtagtgcgactcaagaacttgt Alignment from Pairagon ACGGGGAACTGGTGCTTTTAAATCACGAGTAGGACTGCCTGCGCCTGCTCCTGTTATCAATAGCAAATACGGACTTAGAGAAACAGATAAACGCTTAAATAGGCTTAAAAAGTTAGGTGACAGCAGCAAAAACTCAGACAGTCAGTCTGTCAGCTCTAACACAGATGCAGACACCACTCAGGAAAAAGACAATGCAA cggccattttgccttttctctgttttgcaatgactgcttcaactttccagACGCGGAACTGGTGCCTTTAAATCACGAGTAGGAGTGCTTGCACCTGCTCCAGTTATCAATAGCAAATATGGACTTGGAGAAACAGATAAGCACTTAAATAGGCTTAAAAAGTTAGGTGA---CAGCAAAAACTCTGATAGTCAGTCTGTTAGCTCTAACACAGATGCTGACACCACTCAAGAAAAAGATAATGCAAgtatgtgatcagcagcaccaacatgacagtagtgcgactcaagaacttgt Alignment from Exonerate_protein2genome ACGGGGAACTGGTGCTTTTAAATCACGAGTAGGACTGCCTGCGCCTGCTCCTGTTATCAATAGCAAATACGGACTTAGAGAAACAGATAAACGCTTAAATAGGCTTAAAAAGTTAGGTGACAGCAGCAAAAACTCAGACAGTCAGTCTGTCAGCTCTAACACAGATGCAGACACCACTCAGGAAAAAGACAATGCAA cggccattttgccttttctctgttttgcaatgactgcttcaactttccagACGCGGAACTGGTGCCTTTAAATCACGAGTAGGAGTGCTTGCACCTGCTCCAGTTATCAATAGCAAATATGGACTTGGAGAAACAGATAAGCACTTAAATAGGCTTAAAAAGTTAGGTGAC---AGCAAAAACTCTGATAGTCAGTCTGTTAGCTCTAACACAGATGCTGACACCACTCAAGAAAAAGATAATGCAAgtatgtgatcagcagcaccaacatgacagtagtgcgactcaagaacttgt Alignment from Exonerate_coding2genome ACGGGGAACTGGTGCTTTTAAATCACGAGTAGGACTGCCTGCGCCTGCTCCTGTTATCAATAGCAAATACGGACTTAGAGAAACAGATAAACGCTTAAATAGGCTTAAAAAGTTAGGTGACAGCAGCAAAAACTCAGACAGTCAGTCTGTCAGCTCTAACACAGATGCAGACACCACTCAGGAAAAAGACAATGCAA cggccattttgccttttctctgttttgcaatgactgcttcaactttccagACGCGGAACTGGTGCCTTTAAATCACGAGTAGGAGTGCTTGCACCTGCTCCAGTTATCAATAGCAAATATGGACTTGGAGAAACAGATAAGCACTTAAATAGGCTTAAAAAGTTAGGTGAC---AGCAAAAACTCTGATAGTCAGTCTGTTAGCTCTAACACAGATGCTGACACCACTCAAGAAAAAGATAATGCAAgtatgtgatcagcagcaccaacatgacagtagtgcgactcaagaacttgt Alignment from GeneWise ACGGGGAACTGGTGCTTTTAAATCACGAGTAGGACTGCCTGCGCCTGCTCCTGTTATCAATAGCAAATACGGACTTAGAGAAACAGATAAACGCTTAAATAGGCTTAAAAAGTTAGGTGACAGCAGCAAAAACTCAGACAGTCAGTCTGTCAGCTCTAACACAGATGCAGACACCACTCAGGAAAAAGACAATGCAA cggccattttgccttttctctgttttgcaatgactgcttcaactttccagACGCGGAACTGGTGCCTTTAAATCACGAGTAGGAGTGCTTGCACCTGCTCCAGTTATCAATAGCAAATATGGACTTGGAGAAACAGATAAGCACTTAAATAGGCTTAAAAAGTTAGGTGACAGC---AAAAACTCTGATAGTCAGTCTGTTAGCTCTAACACAGATGCTGACACCACTCAAGAAAAAGATAATGCAAgtatgtgatcagcagcaccaacatgacagtagtgcgactcaagaacttgt #### Syt12_ID537_3 --> 0 - 0 Original Alignment CGGGTCCCTCCTTGGAATGACCAGCGGACCACTACTCGGGGACCACCCAGCCGCAAAGGCAGCCTTAGTATAGAAGACACCTTTGAAAGCATCAGTGAGCTGGGACCCCTGGAGCTGATGGGCCGGGAACTGGACTTAGCCCCCTATGGTACTCTCCGAAAGTCACAGTCGGCTGACTCTCTGAATTCCATCTCCTCTGTGAGCAACACCTTTGGGCAGGATTTCACCCTGGGCCAGGTGGAGGTGAGCATGGACTATGATGGAGCCTCCCACACCCTCCACGTGGCAGTACTACAAGGCAAAGACCTCCTGGAGCGCGAGGAGGCCACCTTCGAGTCCTGCTTCATGCGTGTCAGTCTGCTGCCAGACGAACAGATCGTGGGCATCTCCCGG tatataacaatctatggtagtgaattgcattttctcttcactgtcttaagCAGGTC---CCTTGGAATGGCCAACGAACCACCACCCAGGGCCCACCCAGCCGCAAAAGCAGCCTTAGCATAGAAGACAGCTTTGAAAGTGTGAGTCAGCTAGGACCCCTGGAGCTGATAGGGCAGGAACTTGGCTTGGCCCCCTATGGCGCTCCCCGGAAGTCCCAGTCTGCTGACCCACTTAATTCTGTGTCTTCAGTGAGTAACACATTTGGACAAGATTTC---ATGGCCCAAGTAGAGGTGAGCATGGACTATGATGGGGCATCCCATAATCTTCATGTTGTAGTATTACATGGCAAAGACCTGCTGGAGCGTGAGGAGGCCACCTTTGAGTCCTGCATTATGTGTGTGATACACCTGCCAAAGGAACAGATTGTTGGCATTTCCCAGgtataggtagtccggaaattcaactattcctacccagcaatgcatcaacc Alignment from CESAR CGGGTCCCTCCTTGGAATGACCAGCGGACCACTACTCGGGGACCACCCAGCCGCAAAGGCAGCCTTAGTATAGAAGACACCTTTGAAAGCATCAGTGAGCTGGGACCCCTGGAGCTGATGGGCCGGGAACTGGACTTAGCCCCCTATGGTACTCTCCGAAAGTCACAGTCGGCTGACTCTCTGAATTCCATCTCCTCTGTGAGCAACACCTTTGGGCAGGATTTCACCCTGGGCCAGGTGGAGGTGAGCATGGACTATGATGGAGCCTCCCACACCCTCCACGTGGCAGTACTACAAGGCAAAGACCTCCTGGAGCGCGAGGAGGCCACCTTCGAGTCCTGCTTCATGCGTGTCAGTCTGCTGCCAGACGAACAGATCGTGGGCATCTCCCGG tatataacaatctatggtagtgaattgcattttctcttcactgtcttaagCAGGTC---CCTTGGAATGGCCAACGAACCACCACCCAGGGCCCACCCAGCCGCAAAAGCAGCCTTAGCATAGAAGACAGCTTTGAAAGTGTGAGTCAGCTAGGACCCCTGGAGCTGATAGGGCAGGAACTTGGCTTGGCCCCCTATGGCGCTCCCCGGAAGTCCCAGTCTGCTGACCCACTTAATTCTGTGTCTTCAGTGAGTAACACATTTGGACAAGATTTC---ATGGCCCAAGTAGAGGTGAGCATGGACTATGATGGGGCATCCCATAATCTTCATGTTGTAGTATTACATGGCAAAGACCTGCTGGAGCGTGAGGAGGCCACCTTTGAGTCCTGCATTATGTGTGTGATACACCTGCCAAAGGAACAGATTGTTGGCATTTCCCAGgtataggtagtccggaaattcaactattcctacccagcaatgcatcaacc Alignment from Spaln_aa2Genome CGGGTCCCTCCTTGGAATGACCAGCGGACCACTACTCGGGGACCACCCAGCCGCAAAGGCAGCCTTAGTATAGAAGACACCTTTGAAAGCATCAGTGAGCTGGGACCCCTGGAGCTGATGGGCCGGGAACTGGACTTAGCCCCCTATGGTACTCTCCGAAAGTCACAGTCGGCTGACTCTCTGAATTCCATCTCCTCTGTGAGCAACACCTTTGGGCAGGATTTCACCCTGGGCCAGGTGGAGGTGAGCATGGACTATGATGGAGCCTCCCACACCCTCCACGTGGCAGTACTACAAGGCAAAGACCTCCTGGAGCGCGAGGAGGCCACCTTCGAGTCCTGCTTCATGCGTGTCAGTCTGCTGCCAGACGAACAGATCGTGGGCATCTCCCGG tatataacaatctatggtagtgaattgcattttctcttcactgtcttaagCAGGTC---CCTTGGAATGGCCAACGAACCACCACCCAGGGCCCACCCAGCCGCAAAAGCAGCCTTAGCATAGAAGACAGCTTTGAAAGTGTGAGTCAGCTAGGACCCCTGGAGCTGATAGGGCAGGAACTTGGCTTGGCCCCCTATGGCGCTCCCCGGAAGTCCCAGTCTGCTGACCCACTTAATTCTGTGTCTTCAGTGAGTAACACATTTGGACAAGATTTC---ATGGCCCAAGTAGAGGTGAGCATGGACTATGATGGGGCATCCCATAATCTTCATGTTGTAGTATTACATGGCAAAGACCTGCTGGAGCGTGAGGAGGCCACCTTTGAGTCCTGCATTATGTGTGTGATACACCTGCCAAAGGAACAGATTGTTGGCATTTCCCAGgtataggtagtccggaaattcaactattcctacccagcaatgcatcaacc Alignment from Spaln_nt2Genome CGGGTCCCTCCTTGGAATGACCAGCGGACCACTACTCGGGGACCACCCAGCCGCAAAGGCAGCCTTAGTATAGAAGACACCTTTGAAAGCATCAGTGAGCTGGGACCCCTGGAGCTGATGGGCCGGGAACTGGACTTAGCCCCCTATGGTACTCTCCGAAAGTCACAGTCGGCTGACTCTCTGAATTCCATCTCCTCTGTGAGCAACACCTTTGGGCAGGATTTCACCCTGGGCCAGGTGGAGGTGAGCATGGACTATGATGGAGCCTCCCACACCCTCCACGTGGCAGTACTACAAGGCAAAGACCTCCTGGAGCGCGAGGAGGCCACCTTCGAGTCCTGCTTCATGCGTGTCAGTCTGCTGCCAGACGAACAGATCGTGGGCATCTCCCGG tatataacaatctatggtagtgaattgcattttctcttcactgtcttaagCAGGTC---CCTTGGAATGGCCAACGAACCACCACCCAGGGCCCACCCAGCCGCAAAAGCAGCCTTAGCATAGAAGACAGCTTTGAAAGTGTGAGTCAGCTAGGACCCCTGGAGCTGATAGGGCAGGAACTTGGCTTGGCCCCCTATGGCGCTCCCCGGAAGTCCCAGTCTGCTGACCCACTTAATTCTGTGTCTTCAGTGAGTAACACATTTGGACAAGATTTCA---TGGCCCAAGTAGAGGTGAGCATGGACTATGATGGGGCATCCCATAATCTTCATGTTGTAGTATTACATGGCAAAGACCTGCTGGAGCGTGAGGAGGCCACCTTTGAGTCCTGCATTATGTGTGTGATACACCTGCCAAAGGAACAGATTGTTGGCATTTCCCAGgtataggtagtccggaaattcaactattcctacccagcaatgcatcaacc Alignment from Pairagon CGGGTCCCTCCTTGGAATGACCAGCGGACCACTACTCGGGGACCACCCAGCCGCAAAGGCAGCCTTAGTATAGAAGACACCTTTGAAAGCATCAGTGAGCTGGGACCCCTGGAGCTGATGGGCCGGGAACTGGACTTAGCCCCCTATGGTACTCTCCGAAAGTCACAGTCGGCTGACTCTCTGAATTCCATCTCCTCTGTGAGCAACACCTTTGGGCAGGATTTCACCCTGGGCCAGGTGGAGGTGAGCATGGACTATGATGGAGCCTCCCACACCCTCCACGTGGCAGTACTACAAGGCAAAGACCTCCTGGAGCGCGAGGAGGCCACCTTCGAGTCCTGCTTCATGCGTGTCAGTCTGCTGCCAGACGAACAGATCGTGGGCATCTCCCGG tatataacaatctatggtagtgaattgcattttctcttcactgtcttaagCAGGTC---CCTTGGAATGGCCAACGAACCACCACCCAGGGCCCACCCAGCCGCAAAAGCAGCCTTAGCATAGAAGACAGCTTTGAAAGTGTGAGTCAGCTAGGACCCCTGGAGCTGATAGGGCAGGAACTTGGCTTGGCCCCCTATGGCGCTCCCCGGAAGTCCCAGTCTGCTGACCCACTTAATTCTGTGTCTTCAGTGAGTAACACATTTGGACAAGATTTCA---TGGCCCAAGTAGAGGTGAGCATGGACTATGATGGGGCATCCCATAATCTTCATGTTGTAGTATTACATGGCAAAGACCTGCTGGAGCGTGAGGAGGCCACCTTTGAGTCCTGCATTATGTGTGTGATACACCTGCCAAAGGAACAGATTGTTGGCATTTCCCAGgtataggtagtccggaaattcaactattcctacccagcaatgcatcaacc Alignment from Exonerate_protein2genome CGGGTCCCTCCTTGGAATGACCAGCGGACCACTACTCGGGGACCACCCAGCCGCAAAGGCAGCCTTAGTATAGAAGACACCTTTGAAAGCATCAGTGAGCTGGGACCCCTGGAGCTGATGGGCCGGGAACTGGACTTAGCCCCCTATGGTACTCTCCGAAAGTCACAGTCGGCTGACTCTCTGAATTCCATCTCCTCTGTGAGCAACACCTTTGGGCAGGATTTCACCCTGGGCCAGGTGGAGGTGAGCATGGACTATGATGGAGCCTCCCACACCCTCCACGTGGCAGTACTACAAGGCAAAGACCTCCTGGAGCGCGAGGAGGCCACCTTCGAGTCCTGCTTCATGCGTGTCAGTCTGCTGCCAGACGAACAGATCGTGGGCATCTCCCGG tatataacaatctatggtagtgaattgcattttctcttcactgtcttAAGCAGGTCCCTTGGAATGGCCAACGAACCACCACCCAGGGCCCACCCAGCCGCAAAAGCAGCCTTAGCATAGAAGACAGCTTTGAAAGTGTGAGTCAGCTAGGACCCCTGGAGCTGATAGGGCAGGAACTTGGCTTGGCCCCCTATGGCGCTCCCCGGAAGTCCCAGTCTGCTGACCCACTTAATTCTGTGTCTTCAGTGAGTAACACATTTGGACAAGATTTC---ATGGCCCAAGTAGAGGTGAGCATGGACTATGATGGGGCATCCCATAATCTTCATGTTGTAGTATTACATGGCAAAGACCTGCTGGAGCGTGAGGAGGCCACCTTTGAGTCCTGCATTATGTGTGTGATACACCTGCCAAAGGAACAGATTGTTGGCATTTCCCAGgtataggtagtccggaaattcaactattcctacccagcaatgcatcaacc Alignment from Exonerate_coding2genome CGGGTCCCTCCTTGGAATGACCAGCGGACCACTACTCGGGGACCACCCAGCCGCAAAGGCAGCCTTAGTATAGAAGACACCTTTGAAAGCATCAGTGAGCTGGGACCCCTGGAGCTGATGGGCCGGGAACTGGACTTAGCCCCCTATGGTACTCTCCGAAAGTCACAGTCGGCTGACTCTCTGAATTCCATCTCCTCTGTGAGCAACACCTTTGGGCAGGATTTCACCCTGGGCCAGGTGGAGGTGAGCATGGACTATGATGGAGCCTCCCACACCCTCCACGTGGCAGTACTACAAGGCAAAGACCTCCTGGAGCGCGAGGAGGCCACCTTCGAGTCCTGCTTCATGCGTGTCAGTCTGCTGCCAGACGAACAGATCGTGGGCATCTCCCGG tatataacaatctatggtagtgaattgcattttctcttcactgtcttAAGCAGGTCCCTTGGAATGGCCAACGAACCACCACCCAGGGCCCACCCAGCCGCAAAAGCAGCCTTAGCATAGAAGACAGCTTTGAAAGTGTGAGTCAGCTAGGACCCCTGGAGCTGATAGGGCAGGAACTTGGCTTGGCCCCCTATGGCGCTCCCCGGAAGTCCCAGTCTGCTGACCCACTTAATTCTGTGTCTTCAGTGAGTAACACATTTGGACAAGATTTC---ATGGCCCAAGTAGAGGTGAGCATGGACTATGATGGGGCATCCCATAATCTTCATGTTGTAGTATTACATGGCAAAGACCTGCTGGAGCGTGAGGAGGCCACCTTTGAGTCCTGCATTATGTGTGTGATACACCTGCCAAAGGAACAGATTGTTGGCATTTCCCAGgtataggtagtccggaaattcaactattcctacccagcaatgcatcaacc Alignment from GeneWise CGGGTCCCTCCTTGGAATGACCAGCGGACCACTACTCGGGGACCACCCAGCCGCAAAGGCAGCCTTAGTATAGAAGACACCTTTGAAAGCATCAGTGAGCTGGGACCCCTGGAGCTGATGGGCCGGGAACTGGACTTAGCCCCCTATGGTACTCTCCGAAAGTCACAGTCGGCTGACTCTCTGAATTCCATCTCCTCTGTGAGCAACACCTTTGGGCAGGATTTCACCCTGGGCCAGGTGGAGGTGAGCATGGACTATGATGGAGCCTCCCACACCCTCCACGTGGCAGTACTACAAGGCAAAGACCTCCTGGAGCGCGAGGAGGCCACCTTCGAGTCCTGCTTCATGCGTGTCAGTCTGCTGCCAGACGAACAGATCGTGGGCATCTCCCGG tatataacaatctatggtagtgaattgcattttctcttcactgtcttaagCAGGTCCCT---TGGAATGGCCAACGAACCACCACCCAGGGCCCACCCAGCCGCAAAAGCAGCCTTAGCATAGAAGACAGCTTTGAAAGTGTGAGTCAGCTAGGACCCCTGGAGCTGATAGGGCAGGAACTTGGCTTGGCCCCCTATGGCGCTCCCCGGAAGTCCCAGTCTGCTGACCCACTTAATTCTGTGTCTTCAGTGAGTAACACATTTGGACAAGATTTC---ATGGCCCAAGTAGAGGTGAGCATGGACTATGATGGGGCATCCCATAATCTTCATGTTGTAGTATTACATGGCAAAGACCTGCTGGAGCGTGAGGAGGCCACCTTTGAGTCCTGCATTATGTGTGTGATACACCTGCCAAAGGAACAGATTGTTGGCATTTCCCAGgtataggtagtccggaaattcaactattcctacccagcaatgcatcaacc #### Syvn1_ID1384_3 --> 0 - 0 Original Alignment CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT cttaatatcaatgctgtttcatagattcccctgttatatttcgcctttagCACCTCCTGGAACGGTCCTGGTATGCTGTCACAGAAATCTGTTTGACCTTTACTGTTATTGGAGATGACTCAAGTCCCCAATTTGTGGCACTCTTTATGCTTCTTCTCTTCCTCAAGTGCTTCCAGTGGTTAGCTGAAGATCATGTGGATTTTgtgagtttaaatctcctgatgaatatgtaggtgtctctgctgacagccgt Alignment from CESAR CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT cttaatatcaatgctgtttcatagattcccctgttatatttcgcctttagCACCTCCTGGAACGGTCCTGGTATGCTGTCACAGAAATCTGTTTGACCTTTACTGTTATTGGAGATGACTCAAGTCCCCAATTTGTGGCACTCTTTATGCTTCTTCTCTTCCTCAAGTGCTTCCAGTGGTTAGCTGAAGATCATGTGGATTTTgtgagtttaaatctcctgatgaatatgtaggtgtctctctgattctgctt Alignment from Spaln_aa2Genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT cttaatatcaatgctgtttcatagattcccctgttatatttcgcctttagCACCTCCTGGAACGGTCCTGGTATGCTGTCACAGAAATCTGTTTGACCTTTACTGTTATTGGAGATGACTCAAGTCCCCAATTTGTGGCACTCTTTATGCTTCTTCTCTTCCTCAAGTGCTTCCAGTGGTTAGCTGAAGATCATGTGGATTTTgtgagtttaaatctcctgatgaatatgtaggtgtctctgctgacagccgt Alignment from Spaln_nt2Genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT cttaatatcaatgctgtttcatagattcccctgttatatttcgcctttagCACCTCCTGGAACGGTCCTGGTATGCTGTCACAGAAATCTGTTTGACCTTTACTGTTATTGGAGATGACTCAAGTCCCCAATTTGTGGCACTCTTTATGCTTCTTCTCTTCCTCAAGTGCTTCCAGTGGTTAGCTGAAGATCATGTGGATTTTgtgagtttaaatctcctgatgaatatgtaggtgtctctgctgacagccgt Alignment from Pairagon CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT cttaatatcaatgctgtttcatagattcccctgttatatttcgcctttagCACCTCCTGGAACGGTCCTGGTATGCTGTCACAGAAATCTGTTTGACCTTTACTGTTATTGGAGATGACTCAAGTCCCCAATTTGTGGCACTCTTTATGCTTCTTCTCTTCCTCAAGTGCTTCCAGTGGTTAGCTGAAGATCATGTGGATTTTgtgagtttaaatctcctgatgaatatgtaggtgtctctgctgacagccgt Alignment from Exonerate_protein2genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT cttaatatcaatgctgtttcatagattcccctgttatatttcgcctttagCACCTCCTGGAACGGTCCTGGTATGCTGTCACAGAAATCTGTTTGACCTTTACTGTTATTGGAGATGACTCAAGTCCCCAATTTGTGGCACTCTTTATGCTTCTTCTCTTCCTCAAGTGCTTCCAGTGGTTAGCTGAAGATCATGTGGATTTTgtgagtttaaatctcctgatgaatatgtaggtgtctctgctgacagccgt Alignment from Exonerate_coding2genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT cttaatatcaatgctgtttcatagattcccctgttatatttcgcctttagCACCTCCTGGAACGGTCCTGGTATGCTGTCACAGAAATCTGTTTGACCTTTACTGTTATTGGAGATGACTCAAGTCCCCAATTTGTGGCACTCTTTATGCTTCTTCTCTTCCTCAAGTGCTTCCAGTGGTTAGCTGAAGATCATGTGGATTTTgtgagtttaaatctcctgatgaatatgtaggtgtctctgctgacagccgt Alignment from GeneWise CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTTATG- cttaatatcaatgctgtttcatagattcccctgttatatttcgcctttagCACCTCCTGGAACGGTCCTGGTATGCTGTCACAGAAATCTGTTTGACCTTTACTGTTATTGGAGATGACTCAAGTCCCCAATTTGTGGCACTCTTTATGCTTCTTCTCTTCCTCAAGTGCTTCCAGTGGTTAGCTGAAGATCATGTGGATTTTGTGAgtttaaatctcctgatgaatatgtaggtgtctctgctgacagccgt #### Syvn1_ID1393_12 --> 2 - 1 Original Alignment ccGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTg gtaattgactcacttccaatttaccttatcgctccccttgccttctgcagctGTCTCTCAGCCTAGTGGAGCAGCAACCACTCCAGCTTCCAGCACAGGTCCCTCTGCCCCAGCACCTGGATCTGTACCAAGTGCAGAGGCTGGTCCTGCCCCCGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCTACCTCCACCATTTggtaagttgcccatcaccctactctctttggcatgatgtcaaatactaagc Alignment from CESAR ccGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTg gtaattgactcacttccaatttaccttatcgctccccttgccttctgcagctGTCTCTCAGCCTAGTGGAGCAGCAACCACTCCAGCTTCCAGCACAGGTCCCTCTGCCCCAGCACCTGGATCTGTACCAAGTGCAGAGGCTGGTCCTGCCCCCGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCTACCTCCACCATTTggtaagttgcccatcaccctactctctttggcatgatgtcaaatactaagc Alignment from Spaln_aa2Genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG gtaattgactcacttccaatttaccttatcgctccccttgccttctgcagCTGTCTCTCAGCCTAGTGGAGCAGCAACCACTCCAGCTTCCAGCACAGGTCCCTCTGCCCCAGCACCTGGATCTGTACCAAGTGCAGAGGCTGGTCCTGCCCCCGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCTACCTCCACCATTTGgtaagttgcccatcaccctactctctttggcatgatgtcaaatactaagc Alignment from Spaln_nt2Genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG gtaattgactcacttccaatttaccttatcgctccccttgccttctgcagCTGTCTCTCAGCCTAGTGGAGCAGCAACCACTCCAGCTTCCAGCACAGGTCCCTCTGCCCCAGCACCTGGATCTGTACCAAGTGCAGAGGCTGGTCCTGCCCCCGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCTACCTCCACCATTTGgtaagttgcccatcaccctactctctttggcatgatgtcaaatactaagc Alignment from Pairagon CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG gtaattgactcacttccaatttaccttatcgctccccttgccttctgcagCTGTCTCTCAGCCTAGTGGAGCAGCAACCACTCCAGCTTCCAGCACAGGTCCCTCTGCCCCAGCACCTGGATCTGTACCAAGTGCAGAGGCTGGTCCTGCCCCCGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCTACCTCCACCATTTGgtaagttgcccatcaccctactctctttggcatgatgtcaaatactaagc Alignment from Exonerate_protein2genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG gtaattgactcacttccaatttaccttatcgctccccttgccttctgcagCTGTCTCTCAGCCTAGTGGAGCAGCAACCACTCCAGCTTCCAGCACAGGTCCCTCTGCCCCAGCACCTGGATCTGTACCAAGTGCAGAGGCTGGTCCTGCCCCCGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCTACCTCCACCATTTGgtaagttgcccatcaccctactctctttggcatgatgtcaaatactaagc Alignment from Exonerate_coding2genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG gtaattgactcacttccaatttaccttatcgctccccttgccttctgcagCTGTCTCTCAGCCTAGTGGAGCAGCAACCACTCCAGCTTCCAGCACAGGTCCCTCTGCCCCAGCACCTGGATCTGTACCAAGTGCAGAGGCTGGTCCTGCCCCCGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCTACCTCCACCATTTGgtaagttgcccatcaccctactctctttggcatgatgtcaaatactaagc Alignment from GeneWise CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG gtaattgactcacttccaatttaccttatcgctccccttgccttctgcagCTGTCTCTCAGCCTAGTGGAGCAGCAACCACTCCAGCTTCCAGCACAGGTCCCTCTGCCCCAGCACCTGGATCTGTACCAAGTGCAGAGGCTGGTCCTGCCCCCGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCTACCTCCACCATTTGgtaagttgcccatcaccctactctctttggcatgatgtcaaatactaagc #### Taf5_ID10101_9 --> 1 - 0 Original Alignment gCTTTGGGCTACCGATCACTATCAGCCTTTGAGGATATTTGCTGGCCATCTTGCTGATGTGAATTGCACTAGATTTCATCCAAATTCGAACTATGTTGCTACGGGCTCTGCAGACAGAACTGTGCGGCTCTGGGATGTCCTCAATGGTAACTGTGTAAGAATCTTCACTGGGCACAAG acttgatgttcatcgaaactccctgtctctctgcttcttctcttctttaggCTTTGGACTACCGATCACTATCAACCTTTAAGGATATTTGCTGTTCATCTTGCTGATGTCAACTGCACTAGATTTCATCCTAATTCAAACTGTGTCTCTACAGGCTCAGCAGACAGGACTGCGCGCCTATGGGACGTGCTGAATGGTAACTCTGTAAGAATATACACTGGGCATAAGgtaaggctcactttcgagattactttactatgccaatgtttttcaaaaac Alignment from CESAR gCTTTGGGCTACCGATCACTATCAGCCTTTGAGGATATTTGCTGGCCATCTTGCTGATGTGAATTGCACTAGATTTCATCCAAATTCGAACTATGTTGCTACGGGCTCTGCAGACAGAACTGTGCGGCTCTGGGATGTCCTCAATGGTAACTGTGTAAGAATCTTCACTGGGCACAAG acttgatgttcatcgaaactccctgtctctctgcttcttctcttctttaggCTTTGGACTACCGATCACTATCAACCTTTAAGGATATTTGCTGTTCATCTTGCTGATGTCAACTGCACTAGATTTCATCCTAATTCAAACTGTGTCTCTACAGGCTCAGCAGACAGGACTGCGCGCCTATGGGACGTGCTGAATGGTAACTCTGTAAGAATATACACTGGGCATAAGgtaaggctcactttcgagattactttactatgccaatgtttttcaaaaac Alignment from Spaln_aa2Genome GCTTTGGGCTACCGATCACTATCAGCCTTTGAGGATATTTGCTGGCCATCTTGCTGATGTGAATTGCACTAGATTTCATCCAAATTCGAACTATGTTGCTACGGGCTCTGCAGACAGAACTGTGCGGCTCTGGGATGTCCTCAATGGTAACTGTGTAAGAATCTTCACTGGGCACAAG acttgatgttcatcgaaactccctgtctctctgcttcttctcttctttagGCTTTGGACTACCGATCACTATCAACCTTTAAGGATATTTGCTGTTCATCTTGCTGATGTCAACTGCACTAGATTTCATCCTAATTCAAACTGTGTCTCTACAGGCTCAGCAGACAGGACTGCGCGCCTATGGGACGTGCTGAATGGTAACTCTGTAAGAATATACACTGGGCATAAGgtaaggctcactttcgagattactttactatgccaatgtttttcaaaaac Alignment from Spaln_nt2Genome GCTTTGGGCTACCGATCACTATCAGCCTTTGAGGATATTTGCTGGCCATCTTGCTGATGTGAATTGCACTAGATTTCATCCAAATTCGAACTATGTTGCTACGGGCTCTGCAGACAGAACTGTGCGGCTCTGGGATGTCCTCAATGGTAACTGTGTAAGAATCTTCACTGGGCACAAG acttgatgttcatcgaaactccctgtctctctgcttcttctcttctttagGCTTTGGACTACCGATCACTATCAACCTTTAAGGATATTTGCTGTTCATCTTGCTGATGTCAACTGCACTAGATTTCATCCTAATTCAAACTGTGTCTCTACAGGCTCAGCAGACAGGACTGCGCGCCTATGGGACGTGCTGAATGGTAACTCTGTAAGAATATACACTGGGCATAAGgtaaggctcactttcgagattactttactatgccaatgtttttcaaaaac Alignment from Pairagon GCTTTGGGCTACCGATCACTATCAGCCTTTGAGGATATTTGCTGGCCATCTTGCTGATGTGAATTGCACTAGATTTCATCCAAATTCGAACTATGTTGCTACGGGCTCTGCAGACAGAACTGTGCGGCTCTGGGATGTCCTCAATGGTAACTGTGTAAGAATCTTCACTGGGCACAAG acttgatgttcatcgaaactccctgtctctctgcttcttctcttctttagGCTTTGGACTACCGATCACTATCAACCTTTAAGGATATTTGCTGTTCATCTTGCTGATGTCAACTGCACTAGATTTCATCCTAATTCAAACTGTGTCTCTACAGGCTCAGCAGACAGGACTGCGCGCCTATGGGACGTGCTGAATGGTAACTCTGTAAGAATATACACTGGGCATAAGgtaaggctcactttcgagattactttactatgccaatgtttttcaaaaac Alignment from Exonerate_protein2genome GCTTTGGGCTACCGATCACTATCAGCCTTTGAGGATATTTGCTGGCCATCTTGCTGATGTGAATTGCACTAGATTTCATCCAAATTCGAACTATGTTGCTACGGGCTCTGCAGACAGAACTGTGCGGCTCTGGGATGTCCTCAATGGTAACTGTGTAAGAATCTTCACTGGGCACAAG acttgatgttcatcgaaactccctgtctctctgcttcttctcttctttagGCTTTGGACTACCGATCACTATCAACCTTTAAGGATATTTGCTGTTCATCTTGCTGATGTCAACTGCACTAGATTTCATCCTAATTCAAACTGTGTCTCTACAGGCTCAGCAGACAGGACTGCGCGCCTATGGGACGTGCTGAATGGTAACTCTGTAAGAATATACACTGGGCATAAGgtaaggctcactttcgagattactttactatgccaatgtttttcaaaaac Alignment from Exonerate_coding2genome GCTTTGGGCTACCGATCACTATCAGCCTTTGAGGATATTTGCTGGCCATCTTGCTGATGTGAATTGCACTAGATTTCATCCAAATTCGAACTATGTTGCTACGGGCTCTGCAGACAGAACTGTGCGGCTCTGGGATGTCCTCAATGGTAACTGTGTAAGAATCTTCACTGGGCACAAG acttgatgttcatcgaaactccctgtctctctgcttcttctcttctttagGCTTTGGACTACCGATCACTATCAACCTTTAAGGATATTTGCTGTTCATCTTGCTGATGTCAACTGCACTAGATTTCATCCTAATTCAAACTGTGTCTCTACAGGCTCAGCAGACAGGACTGCGCGCCTATGGGACGTGCTGAATGGTAACTCTGTAAGAATATACACTGGGCATAAGgtaaggctcactttcgagattactttactatgccaatgtttttcaaaaac Alignment from GeneWise GCTTTGGGCTACCGATCACTATCAGCCTTTGAGGATATTTGCTGGCCATCTTGCTGATGTGAATTGCACTAGATTTCATCCAAATTCGAACTATGTTGCTACGGGCTCTGCAGACAGAACTGTGCGGCTCTGGGATGTCCTCAATGGTAACTGTGTAAGAATCTTCACTGGGCACAAG acttgatgttcatcgaaactccctgtctctctgcttcttctcttctttagGCTTTGGACTACCGATCACTATCAACCTTTAAGGATATTTGCTGTTCATCTTGCTGATGTCAACTGCACTAGATTTCATCCTAATTCAAACTGTGTCTCTACAGGCTCAGCAGACAGGACTGCGCGCCTATGGGACGTGCTGAATGGTAACTCTGTAAGAATATACACTGGGCATAAGgtaaggctcactttcgagattactttactatgccaatgtttttcaaaaac #### Taf5_ID10102_10 --> 0 - 1 Original Alignment GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAg tggtccatgccaatacactacaattccatgaattgcaaccttgttttcagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAggtgaggcctgtagtgacctcataacagtgcccacctgagtacccctctgc Alignment from CESAR GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAg tggtccatgccaatacactacaattccatgaattgcaaccttgttttcagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAggtgaggcctgtagtgacctcataacagtgcccacgctaatattcttcttt Alignment from Spaln_aa2Genome GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tggtccatgccaatacactacaattccatgaattgcaaccttgttttcagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAGgtgaggcctgtagtgacctcataacagtgcccacctgagtacccctctgc Alignment from Spaln_nt2Genome GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tggtccatgccaatacactacaattccatgaattgcaaccttgttttcagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAGgtgaggcctgtagtgacctcataacagtgcccacctgagtacccctctgc Alignment from Pairagon GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tggtccatgccaatacactacaattccatgaattgcaaccttgttttcagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAGgtgaggcctgtagtgacctcataacagtgcccacctgagtacccctctgc Alignment from Exonerate_protein2genome GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tggtccatgccaatacactacaattccatgaattgcaaccttgttttcagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAGgtgaggcctgtagtgacctcataacagtgcccacctgagtacccctctgc Alignment from Exonerate_coding2genome GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tggtccatgccaatacactacaattccatgaattgcaaccttgttttcagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAGgtgaggcctgtagtgacctcataacagtgcccacctgagtacccctctgc Alignment from GeneWise GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tggtccatgccaatacactacaattccatgaattgcaaccttgttttcagGGCCCAATTCATTCTTTGACATTTTCTCCCAATGGGAGGTTCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACATGGCCTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGATTTAGTAGAGATGGTGAAATTTTGGCGTCAGgtgaggcctgtagtgacctcataacagtgcccacctgagtacccctctgc #### Tbc1d10c_ID401_3 --> 0 - 0 Original Alignment GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG gctcttttttataatgtttgtttgctggctgtcccttctctgccccacagGTAAAGATACAATGTCACAAGGGCATTCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCTCCTATGTGGTGCCCGGATGTGTCAGAAGAATAACCCTGGTACATATCAGgtaggaaggctaggaagtgccctttctcctccattttattgcagGAACTG Alignment from CESAR GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG gctcttttttataatgtttgtttgctggctgtcccttctctgccccacagGTAAAGATACAATGTCACAAGGGCATTCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCTCCTATGTGGTGCCCGGATGTGTCAGAAGAATAACCCTGGTACATATCAGgtaggaaggctaggaagtgccctacattctgtccattgctccagGAACTG Alignment from Spaln_aa2Genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG gctcttttttataatgtttgtttgctggctgtcccttctctgccccacagGTAAAGATACAATGTCACAAGGGCATTCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCTCCTATGTGGTGCCCGGATGTGTCAGAAGAATAACCCTGGTACATATCAGgtaggaaggctaggaagtgccctttctcctccattttattgcagGAACTG Alignment from Spaln_nt2Genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG gctcttttttataatgtttgtttgctggctgtcccttctctgccccacagGTAAAGATACAATGTCACAAGGGCATTCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCTCCTATGTGGTGCCCGGATGTGTCAGAAGAATAACCCTGGTACATATCAGgtaggaaggctaggaagtgccctttctcctccattttattgcagGAACTG Alignment from Pairagon GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG gctcttttttataatgtttgtttgctggctgtcccttctctgccccacagGTAAAGATACAATGTCACAAGGGCATTCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCTCCTATGTGGTGCCCGGATGTGTCAGAAGAATAACCCTGGTACATATCAGgtaggaaggctaggaagtgccctttctcctccattttattgcagGAACTG Alignment from Exonerate_protein2genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG gctcttttttataatgtttgtttgctggctgtcccttctctgccccacagGTAAAGATACAATGTCACAAGGGCATTCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCTCCTATGTGGTGCCCGGATGTGTCAGAAGAATAACCCTGGTACATATCAGgtaggaaggctaggaagtgccctttctcctccattttattgcagGAACTG Alignment from Exonerate_coding2genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG gctcttttttataatgtttgtttgctggctgtcccttctctgccccacagGTAAAGATACAATGTCACAAGGGCATTCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCTCCTATGTGGTGCCCGGATGTGTCAGAAGAATAACCCTGGTACATATCAGgtaggaaggctaggaagtgccctttctcctccattttattgcagGAACTG Alignment from GeneWise GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG GAGCTG gctcttttttataatgtttgtttgctggctgtcccttctctgccccacagGTAAAGATACAATGTCACAAGGGCATTCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCTCCTATGTGGTGCCCGGATGTGTCAGAAGAATAACCCTGGTACATATCAGgtaggaaggctaggaagtgccctttctcctccattttattgcagGAACTG #### Tbc1d12_ID7679_2 --> 1 - 0 Original Alignment aAACCTTTTCCCAAAAAGGACAAAGGAACTCAAATCAGTTGTCCATAGTGCTCCTGGCTGGAAGTTATTTGGTAAAGTCCCTCCCAGAGAAAATCTTCAGAAAACCTCCAAAATTATTCAGCAG ttacttgatgggcaattgggttattcgccatgtccattctacttctctagaAACCTTTTCCCAAAAAGGACAAAGGAACTCAAATCAGTTGTGCATAGTGCTCCTGGCTGGAAGTTATTTGGTAAAGTCCCCCCCAGAGAAAACCTTCAGAAAACCTCTAAAATTATTCAGCAGgtgggcatgagcactagagtgggaattgatgaagttgactaagcctcacg Alignment from CESAR aAACCTTTTCCCAAAAAGGACAAAGGAACTCAAATCAGTTGTCCATAGTGCTCCTGGCTGGAAGTTATTTGGTAAAGTCCCTCCCAGAGAAAATCTTCAGAAAACCTCCAAAATTATTCAGCAG ttacttgatgggcaattgggttattcgccatgtccattctacttctctagaAACCTTTTCCCAAAAAGGACAAAGGAACTCAAATCAGTTGTGCATAGTGCTCCTGGCTGGAAGTTATTTGGTAAAGTCCCCCCCAGAGAAAACCTTCAGAAAACCTCTAAAATTATTCAGCAGgtgggcatgagcactagagtgggaattgatgaagttgactaagcctcacg Alignment from Spaln_aa2Genome AAACCTTTTCCCAAAAAGGACAAAGGAACTCAAATCAGTTGTCCATAGTGCTCCTGGCTGGAAGTTATTTGGTAAAGTCCCTCCCAGAGAAAATCTTCAGAAAACCTCCAAAATTATTCAGCAG ttacttgatgggcaattgggttattcgccatgtccattctacttctctagAAACCTTTTCCCAAAAAGGACAAAGGAACTCAAATCAGTTGTGCATAGTGCTCCTGGCTGGAAGTTATTTGGTAAAGTCCCCCCCAGAGAAAACCTTCAGAAAACCTCTAAAATTATTCAGCAGgtgggcatgagcactagagtgggaattgatgaagttgactaagcctcacg Alignment from Spaln_nt2Genome AAACCTTTTCCCAAAAAGGACAAAGGAACTCAAATCAGTTGTCCATAGTGCTCCTGGCTGGAAGTTATTTGGTAAAGTCCCTCCCAGAGAAAATCTTCAGAAAACCTCCAAAATTATTCAGCAG ttacttgatgggcaattgggttattcgccatgtccattctacttctctagAAACCTTTTCCCAAAAAGGACAAAGGAACTCAAATCAGTTGTGCATAGTGCTCCTGGCTGGAAGTTATTTGGTAAAGTCCCCCCCAGAGAAAACCTTCAGAAAACCTCTAAAATTATTCAGCAGgtgggcatgagcactagagtgggaattgatgaagttgactaagcctcacg Alignment from Pairagon AAACCTTTTCCCAAAAAGGACAAAGGAACTCAAATCAGTTGTCCATAGTGCTCCTGGCTGGAAGTTATTTGGTAAAGTCCCTCCCAGAGAAAATCTTCAGAAAACCTCCAAAATTATTCAGCAG ttacttgatgggcaattgggttattcgccatgtccattctacttctctagAAACCTTTTCCCAAAAAGGACAAAGGAACTCAAATCAGTTGTGCATAGTGCTCCTGGCTGGAAGTTATTTGGTAAAGTCCCCCCCAGAGAAAACCTTCAGAAAACCTCTAAAATTATTCAGCAGgtgggcatgagcactagagtgggaattgatgaagttgactaagcctcacg Alignment from Exonerate_protein2genome AAACCTTTTCCCAAAAAGGACAAAGGAACTCAAATCAGTTGTCCATAGTGCTCCTGGCTGGAAGTTATTTGGTAAAGTCCCTCCCAGAGAAAATCTTCAGAAAACCTCCAAAATTATTCAGCAG ttacttgatgggcaattgggttattcgccatgtccattctacttctctagAAACCTTTTCCCAAAAAGGACAAAGGAACTCAAATCAGTTGTGCATAGTGCTCCTGGCTGGAAGTTATTTGGTAAAGTCCCCCCCAGAGAAAACCTTCAGAAAACCTCTAAAATTATTCAGCAGgtgggcatgagcactagagtgggaattgatgaagttgactaagcctcacg Alignment from Exonerate_coding2genome TTCTTCGCCAGAAACCTTTTCCCAAAAAGGACAAAGGAACTCAAATCAGTTGTCCATAGTGCTCCTGGCTGGAAGTTATTTGGTAAAGTCCCTCCCAGAGAAAATCTTCAGAAAACCTCCAAAATTATTCAGCAG ttacttgatgggcaattgggttattcgccatgtccattcTACTTCTCTAGAAACCTTTTCCCAAAAAGGACAAAGGAACTCAAATCAGTTGTGCATAGTGCTCCTGGCTGGAAGTTATTTGGTAAAGTCCCCCCCAGAGAAAACCTTCAGAAAACCTCTAAAATTATTCAGCAGgtgggcatgagcactagagtgggaattgatgaagttgactaagcctcacg Alignment from GeneWise AAACCTTTTCCCAAAAAGGACAAAGGAACTCAAATCAGTTGTCCATAGTGCTCCTGGCTGGAAGTTATTTGGTAAAGTCCCTCCCAGAGAAAATCTTCAGAAAACCTCCAAAATTATTCAGCAG ttacttgatgggcaattgggttattcgccatgtccattctacttctctagAAACCTTTTCCCAAAAAGGACAAAGGAACTCAAATCAGTTGTGCATAGTGCTCCTGGCTGGAAGTTATTTGGTAAAGTCCCCCCCAGAGAAAACCTTCAGAAAACCTCTAAAATTATTCAGCAGgtgggcatgagcactagagtgggaattgatgaagttgactaagcctcacg #### Tbc1d12_ID7689_12 --> 1 - 0 Original Alignment gATCTTCACATTGTACAGCAAATCACTGCCACTTGATCTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAATTTTTATTTAGGACTGGATTAGGGATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGCACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATTCAGATGCAGAATAGCACCAAGAAATGGACTCAG gctactcatctggaaaggaacgttatacaagactcctgttgtacctctaggATCTTCACATTGTACAGCGTATCATTGCCACTTGATTTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAGTTCTTATTTCGGACTGGATTGGGTATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGTACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATCCAGATGCGGAATAGCACCAAGAAATGGACTCAGgtaaggtctgttctgcaccctaaataatgttttaagaatcctcgcaggat Alignment from CESAR gATCTTCACATTGTACAGCAAATCACTGCCACTTGATCTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAATTTTTATTTAGGACTGGATTAGGGATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGCACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATTCAGATGCAGAATAGCACCAAGAAATGGACTCAG gctactcatctggaaaggaacgttatacaagactcctgttgtacctctaggATCTTCACATTGTACAGCGTATCATTGCCACTTGATTTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAGTTCTTATTTCGGACTGGATTGGGTATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGTACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATCCAGATGCGGAATAGCACCAAGAAATGGACTCAGgtaaggtctgttctgcaccctaaataatgttttaagaatcctcgcaggat Alignment from Spaln_aa2Genome GATCTTCACATTGTACAGCAAATCACTGCCACTTGATCTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAATTTTTATTTAGGACTGGATTAGGGATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGCACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATTCAGATGCAGAATAGCACCAAGAAATGGACTCAG gctactcatctggaaaggaacgttatacaagactcctgttgtacctctagGATCTTCACATTGTACAGCGTATCATTGCCACTTGATTTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAGTTCTTATTTCGGACTGGATTGGGTATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGTACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATCCAGATGCGGAATAGCACCAAGAAATGGACTCAGgtaaggtctgttctgcaccctaaataatgttttaagaatcctcgcaggat Alignment from Spaln_nt2Genome GATCTTCACATTGTACAGCAAATCACTGCCACTTGATCTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAATTTTTATTTAGGACTGGATTAGGGATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGCACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATTCAGATGCAGAATAGCACCAAGAAATGGACTCAG gctactcatctggaaaggaacgttatacaagactcctgttgtacctctagGATCTTCACATTGTACAGCGTATCATTGCCACTTGATTTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAGTTCTTATTTCGGACTGGATTGGGTATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGTACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATCCAGATGCGGAATAGCACCAAGAAATGGACTCAGgtaaggtctgttctgcaccctaaataatgttttaagaatcctcgcaggat Alignment from Pairagon GATCTTCACATTGTACAGCAAATCACTGCCACTTGATCTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAATTTTTATTTAGGACTGGATTAGGGATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGCACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATTCAGATGCAGAATAGCACCAAGAAATGGACTCAG gctactcatctggaaaggaacgttatacaagactcctgttgtacctctagGATCTTCACATTGTACAGCGTATCATTGCCACTTGATTTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAGTTCTTATTTCGGACTGGATTGGGTATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGTACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATCCAGATGCGGAATAGCACCAAGAAATGGACTCAGgtaaggtctgttctgcaccctaaataatgttttaagaatcctcgcaggat Alignment from Exonerate_protein2genome GATCTTCACATTGTACAGCAAATCACTGCCACTTGATCTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAATTTTTATTTAGGACTGGATTAGGGATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGCACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATTCAGATGCAGAATAGCACCAAGAAATGGACTCAG gctactcatctggaaaggaacgttatacaagactcctgttgtacctctagGATCTTCACATTGTACAGCGTATCATTGCCACTTGATTTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAGTTCTTATTTCGGACTGGATTGGGTATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGTACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATCCAGATGCGGAATAGCACCAAGAAATGGACTCAGgtaaggtctgttctgcaccctaaataatgttttaagaatcctcgcaggat Alignment from Exonerate_coding2genome GATCTTCACATTGTACAGCAAATCACTGCCACTTGATCTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAATTTTTATTTAGGACTGGATTAGGGATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGCACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATTCAGATGCAGAATAGCACCAAGAAATGGACTCAG gctactcatctggaaaggaacgttatacaagactcctgttgtacctctagGATCTTCACATTGTACAGCGTATCATTGCCACTTGATTTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAGTTCTTATTTCGGACTGGATTGGGTATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGTACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATCCAGATGCGGAATAGCACCAAGAAATGGACTCAGgtaaggtctgttctgcaccctaaataatgttttaagaatcctcgcaggat Alignment from GeneWise GATCTTCACATTGTACAGCAAATCACTGCCACTTGATCTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAATTTTTATTTAGGACTGGATTAGGGATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGCACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATTCAGATGCAGAATAGCACCAAGAAATGGACTCAG gctactcatctggaaaggaacgttatacaagactcctgttgtacctctagGATCTTCACATTGTACAGCGTATCATTGCCACTTGATTTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAGTTCTTATTTCGGACTGGATTGGGTATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGTACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATCCAGATGCGGAATAGCACCAAGAAATGGACTCAGgtaaggtctgttctgcaccctaaataatgttttaagaatcctcgcaggat #### Tcirg1_ID169_18 --> 2 - 2 Original Alignment agCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACtg catgtcacaggtttacaatgctcttaggccccatgtcctttaatctatagagCTGTCGGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCATGGGCCGAGAGATTGGGGTCGCAGCTGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTTGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATtggtgagagtgatatctatttgatgggatttggcagggaccataggttgatt Alignment from CESAR agCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACtg catgtcacaggtttacaatgctcttaggccccatgtcctttaatctatagagCTGTCGGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCATGGGCCGAGAGATTGGGGTCGCAGCTGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTTGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATtggtgagagtgatatctatttgatgggatttggcagggaccataggttgatt Alignment from Spaln_aa2Genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG catgtcacaggtttacaatgctcttaggccccatgtcctttaatctatagAGCTGTCGGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCATGGGCCGAGAGATTGGGGTCGCAGCTGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTTGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATTGgtgagagtgatatctatttgatgggatttggcagggaccataggttgatt Alignment from Spaln_nt2Genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG catgtcacaggtttacaatgctcttaggccccatgtcctttaatctatagAGCTGTCGGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCATGGGCCGAGAGATTGGGGTCGCAGCTGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTTGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATTGgtgagagtgatatctatttgatgggatttggcagggaccataggttgatt Alignment from Pairagon AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG catgtcacaggtttacaatgctcttaggccccatgtcctttaatctatagAGCTGTCGGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCATGGGCCGAGAGATTGGGGTCGCAGCTGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTTGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATTGgtgagagtgatatctatttgatgggatttggcagggaccataggttgatt Alignment from Exonerate_protein2genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG catgtcacaggtttacaatgctcttaggccccatgtcctttaatctatagAGCTGTCGGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCATGGGCCGAGAGATTGGGGTCGCAGCTGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTTGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATTGgtgagagtgatatctatttgatgggatttggcagggaccataggttgatt Alignment from Exonerate_coding2genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTGGGTGGAG catgtcacaggtttacaatgctcttaggccccatgtcctttaatctatagAGCTGTCGGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCATGGGCCGAGAGATTGGGGTCGCAGCTGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTTGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATTGGTGAGAGtgatatctatttgatgggatttggcagggaccataggttgatt Alignment from GeneWise AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG catgtcacaggtttacaatgctcttaggccccatgtcctttaatctatagAGCTGTCGGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCATGGGCCGAGAGATTGGGGTCGCAGCTGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTTGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATTGgtgagagtgatatctatttgatgggatttggcagggaccataggttgatt #### Tcirg1_ID170_17 --> 0 - 1 Original Alignment TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCc gtggacagatgttcaacttgttagcttctgcagtaatttcacctttgcagTTTGTCCCATCTGAGATTTTCATGCACCGAGCAATCCACATCATTGAGTTCTGTCTTGGTTGCATCTCAAACACAGCCTCTTACCTGCGTCTTTGGGCTTTGAGCCTGGCCCATGCAcgttggtgatgttcattgtgtgatgatatgataaaatcccaatgggtagca Alignment from CESAR TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCc gtggacagatgttcaacttgttagcttctgcagtaatttcacctttgcagTTTGTCCCATCTGAGATTTTCATGCACCGAGCAATCCACATCATTGAGTTCTGTCTTGGTTGCATCTCAAACACAGCCTCTTACCTGCGTCTTTGGGCTTTGAGCCTGGCCCATGCAcgttggtgatgttcattgtgtgatgatatgataaaatcccaatgggtagca Alignment from Spaln_aa2Genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gtggacagatgttcaacttgttagcttctgcagtaatttcacctttgcagTTTGTCCCATCTGAGATTTTCATGCACCGAGCAATCCACATCATTGAGTTCTGTCTTGGTTGCATCTCAAACACAGCCTCTTACCTGCGTCTTTGGGCTTTGAGCCTGGCCCATGCACgttggtgatgttcattgtgtgatgatatgataaaatcccaatgggtagca Alignment from Spaln_nt2Genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gtggacagatgttcaacttgttagcttctgcagtaatttcacctttgcagTTTGTCCCATCTGAGATTTTCATGCACCGAGCAATCCACATCATTGAGTTCTGTCTTGGTTGCATCTCAAACACAGCCTCTTACCTGCGTCTTTGGGCTTTGAGCCTGGCCCATGCACgttggtgatgttcattgtgtgatgatatgataaaatcccaatgggtagca Alignment from Pairagon TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gtggacagatgttcaacttgttagcttctgcagtaatttcacctttgcagTTTGTCCCATCTGAGATTTTCATGCACCGAGCAATCCACATCATTGAGTTCTGTCTTGGTTGCATCTCAAACACAGCCTCTTACCTGCGTCTTTGGGCTTTGAGCCTGGCCCATGCACgttggtgatgttcattgtgtgatgatatgataaaatcccaatgggtagca Alignment from Exonerate_protein2genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gtggacagatgttcaacttgttagcttctgcagtaatttcacctttgcagTTTGTCCCATCTGAGATTTTCATGCACCGAGCAATCCACATCATTGAGTTCTGTCTTGGTTGCATCTCAAACACAGCCTCTTACCTGCGTCTTTGGGCTTTGAGCCTGGCCCATGCACgttggtgatgttcattgtgtgatgatatgataaaatcccaatgggtagca Alignment from Exonerate_coding2genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gtggacagatgttcaacttgttagcttctgcagtaatttcacctttgcagTTTGTCCCATCTGAGATTTTCATGCACCGAGCAATCCACATCATTGAGTTCTGTCTTGGTTGCATCTCAAACACAGCCTCTTACCTGCGTCTTTGGGCTTTGAGCCTGGCCCATGCACgttggtgatgttcattgtgtgatgatatgataaaatcccaatgggtagca Alignment from GeneWise TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gtggacagatgttcaacttgttagcttctgcagtaatttcacctttgcagTTTGTCCCATCTGAGATTTTCATGCACCGAGCAATCCACATCATTGAGTTCTGTCTTGGTTGCATCTCAAACACAGCCTCTTACCTGCGTCTTTGGGCTTTGAGCCTGGCCCATGCACgttggtgatgttcattgtgtgatgatatgataaaatcccaatgggtagca #### Tcirg1_ID172_15 --> 0 - 0 Original Alignment GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG agataatgtaactccaattcaacatgcagatttttaaaattaatttttagGAAGTGGTACAGTATGTCCTGGTGGTCTTGGCTTTAGCTACTGTCCCTATTCTGCTGCTGGGCACACCATTATACCTCCTACGTGAGCACCAGCACAGAAGAAACTCCCAAAGACGA---GCAGGCCAACAGgtgaggacatagtgtttgggctaagtgctgacacatgtaacctcttcttc Alignment from CESAR GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG agataatgtaactccaattcaacatgcagatttttaaaattaatttttagGAAGTGGTACAGTATGTCCTGGTGGTCTTGGCTTTAGCTACTGTCCCTATTCTGCTGCTGGGCACACCATTATACCTCCTACGTGAGCACCAGCACAGAAGAAACTCCCAAAGACGA---GCAGGCCAACAGgtgaggacatagtgtttgggctaagtgctgacacatgtaacctcttcttc Alignment from Spaln_aa2Genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG agataatgtaactccaattcaacatgcagatttttaaaattaatttttagGAAGTGGTACAGTATGTCCTGGTGGTCTTGGCTTTAGCTACTGTCCCTATTCTGCTGCTGGGCACACCATTATACCTCCTACGTGAGCACCAGCACAGAAGAAACTCCCAAAGACGA---GCAGGCCAACAGgtgaggacatagtgtttgggctaagtgctgacacatgtaacctcttcttc Alignment from Spaln_nt2Genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG agataatgtaactccaattcaacatgcagatttttaaaattaatttttagGAAGTGGTACAGTATGTCCTGGTGGTCTTGGCTTTAGCTACTGTCCCTATTCTGCTGCTGGGCACACCATTATACCTCCTACGTGAGCACCAGCACAGAAGAAACTCCCA---AAGACGAGCAGGCCAACAGgtgaggacatagtgtttgggctaagtgctgacacatgtaacctcttcttc Alignment from Pairagon GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG agataatgtaactccaattcaacatgcagatttttaaaattaatttttagGAAGTGGTACAGTATGTCCTGGTGGTCTTGGCTTTAGCTACTGTCCCTATTCTGCTGCTGGGCACACCATTATACCTCCTACGTGAGCACCAGCACAGAAGAAACTCCCA---AAGACGAGCAGGCCAACAGgtgaggacatagtgtttgggctaagtgctgacacatgtaacctcttcttc Alignment from Exonerate_protein2genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG agataatgtaactccaattcaacatgcagatttttaaaattaatttttagGAAGTGGTACAGTATGTCCTGGTGGTCTTGGCTTTAGCTACTGTCCCTATTCTGCTGCTGGGCACACCATTATACCTCCTACGTGAGCACCAGCACAGAAGAAACTCCCAAAGACGA---GCAGGCCAACAGgtgaggacatagtgtttgggctaagtgctgacacatgtaacctcttcttc Alignment from Exonerate_coding2genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG agataatgtaactccaattcaacatgcagatttttaaaattaatttttagGAAGTGGTACAGTATGTCCTGGTGGTCTTGGCTTTAGCTACTGTCCCTATTCTGCTGCTGGGCACACCATTATACCTCCTACGTGAGCACCAGCACAGAAGAAACTCCCAAAGACGA---GCAGGCCAACAGgtgaggacatagtgtttgggctaagtgctgacacatgtaacctcttcttc Alignment from GeneWise GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG agataatgtaactccaattcaacatgcagatttttaaaattaatttttagGAAGTGGTACAGTATGTCCTGGTGGTCTTGGCTTTAGCTACTGTCCCTATTCTGCTGCTGGGCACACCATTATACCTCCTACGTGAGCACCAGCACAGAAGAAACTCCCAAAGACGA---GCAGGCCAACAGgtgaggacatagtgtttgggctaagtgctgacacatgtaacctcttcttc #### Tcirg1_ID173_14 --> 1 - 0 Original Alignment gCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctgatgggaataattcagtgccctcttgttttgcaggCACTTTGGCCAGGCCCACAGGCTGCTGCTTGGGACGTTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TATCTGGTGCTCCTGATTGTCTACAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCAGCCCCC------ATTATCCACTTCATCAAT---TTCCTCTTCTCCCAGAACCCC---AATCATCTGCTGTTCCATGGGCAGgtgagaagtgcgtgaccctgtcatcagggttgttctagtgtcatatagca Alignment from CESAR gCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctgatgggaataattcagtgccctcttgttttgcaggCACTTTGGCCAGGCCCACAGGCTGCTGCTTGGGACGTTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TATCTGGTGCTCCTGATTGTCTACAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCAGCCCCC------ATTATCCACTTCATCAAT---TTCCTCTTCTCCCAGAACCCC---AATCATCTGCTGTTCCATGGGCAGgtgagaagtgcgtgaccctgtcatcagggttgttctagtgtcatatagca Alignment from Spaln_aa2Genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctgatgggaataattcagtgccctcttgttttgcagGCACTTTGGCCAGGCCCACAGGCTGCTGCTTGGGACGTTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TATCTGGTGCTCCTGATTGTCTACAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCAGCCCCC------ATTATCCACTTCATCAAT---TTCCTCTTCTCCCAGAACCCC---AATCATCTGCTGTTCCATGGGCAGgtgagaagtgcgtgaccctgtcatcagggttgttctagtgtcatatagca Alignment from Spaln_nt2Genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctgatgggaataattcagtgccctcttgttttgcagGCACTTTGGCCAGGCCCACAGGCTGCTGCTTGGGACGTTGTCAGAGCTCATCTTCCTCCTGGGCCTCTAT------CTGGTGCTCCTGATTGTCTACAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCAGCCCCCATTATC------CACTTCATCAAT---TTCCTCTTCTCCCAGAACC---CCAATCATCTGCTGTTCCATGGGCAGgtgagaagtgcgtgaccctgtcatcagggttgttctagtgtcatatagca Alignment from Pairagon GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctgatgggaataattcagtgccctcttgttttgcagGCACTTTGGCCAGGCCCACAGGCTGCTGCTTGGGACGTTGTCAGAGCTCATCTTCCTCCTGGGCCT------CTATCTGGTGCTCCTGATTGTCTACAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCAGCCCCCATTATC------CACTTCATCAAT---TTCCTCTTCTCCCAGAACC---CCAATCATCTGCTGTTCCATGGGCAGgtgagaagtgcgtgaccctgtcatcagggttgttctagtgtcatatagca Alignment from Exonerate_protein2genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctgatgggaataattcagtgccctcttgttttgcagGCACTTTGGCCAGGCCCACAGGCTGCTGCTTGGGACGTTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TATCTGGTGCTCCTGATTGTCTACAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCAGCCCCC------ATTATCCACTTCATCAAT---TTCCTCTTCTCCCAGAACCCC---AATCATCTGCTGTTCCATGGGCAGgtgagaagtgcgtgaccctgtcatcagggttgttctagtgtcatatagca Alignment from Exonerate_coding2genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctgatgggaataattcagtgccctcttgttttgcagGCACTTTGGCCAGGCCCACAGGCTGCTGCTTGGGACGTTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TATCTGGTGCTCCTGATTGTCTACAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCAGCCCCC------ATTATCCACTTCATCAAT---TTCCTCTTCTCCCAGAACCCC---AATCATCTGCTGTTCCATGGGCAGgtgagaagtgcgtgaccctgtcatcagggttgttctagtgtcatatagca Alignment from GeneWise GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctgatgggaataattcagtgccctcttgttttgcagGCACTTTGGCCAGGCCCACAGGCTGCTGCTTGGGACGTTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TATCTGGTGCTCCTGATTGTCTACAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCAGCCCCC------ATTATCCACTTCATCAAT---TTCCTCTTCTCCCAGAACCCC---AATCATCTGCTGTTCCATGGGCAGgtgagaagtgcgtgaccctgtcatcagggttgttctagtgtcatatagca #### Tcirg1_ID176_11 --> 0 - 2 Original Alignment ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGag gatcaagaccagggagcctatttttttctgaaaactcttttctcttttagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCTCCTTACAGGTCTGTTCTCTGTCTACACTGGCTTTATTTCTACTGAGTGTTATAGCCAGGCAGCTACTATCTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCCGGCTGGctgtcagtctataacggtgggttcatgtacaggttctgatatgaagcatagc Alignment from CESAR ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGag gatcaagaccagggagcctatttttttctgaaaactcttttctcttttagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCTCCTTACAGGTCTGTTCTCTGTCTACACTGGCTTTATTTCTACTGAGTGTTATAGCCAGGCAGCTACTATCTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCCGGCTGGctgtcagtctataacggtgggttcatgtacaggttctgatatgaagcatagc Alignment from Spaln_aa2Genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG gatcaagaccagggagcctatttttttctgaaaactcttttctcttttagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCTCCTTACAGGTCTGTTCTCTGTCTACACTGGCTTTATTTCTACTGAGTGTTATAGCCAGGCAGCTACTATCTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCCGGCTGGCTgtcagtctataacggtgggttcatgtacaggttctgatatgaagcatagc Alignment from Spaln_nt2Genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG gatcaagaccagggagcctatttttttctgaaaactcttttctcttttagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCTCCTTACAGGTCTGTTCTCTGTCTACACTGGCTTTATTTCTACTGAGTGTTATAGCCAGGCAGCTACTATCTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCCGGCTGGCTgtcagtctataacggtgggttcatgtacaggttctgatatgaagcatagc Alignment from Pairagon ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGG---------------------------------------------------- gatcaagaccagggagcctatttttttctgaaaactcttttctcttttagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCTCCTTACAGGTCTGTTCTCTGTCTACACTGGCTTTATTTCTACTGAGTGTTATAGCCAGGCAGCTACTATCTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCCGGCTGGCTGTCAGTCTATAACGGTGGGTTCATGTACAGGTTCTGATATGAAGCATAGC Alignment from Exonerate_protein2genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG gatcaagaccagggagcctatttttttctgaaaactcttttctcttttagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCTCCTTACAGGTCTGTTCTCTGTCTACACTGGCTTTATTTCTACTGAGTGTTATAGCCAGGCAGCTACTATCTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCCGGCTGGCTgtcagtctataacggtgggttcatgtacaggttctgatatgaagcatagc Alignment from Exonerate_coding2genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG gatcaagaccagggagcctatttttttctgaaaactcttttctcttttagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCTCCTTACAGGTCTGTTCTCTGTCTACACTGGCTTTATTTCTACTGAGTGTTATAGCCAGGCAGCTACTATCTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCCGGCTGGCTgtcagtctataacggtgggttcatgtacaggttctgatatgaagcatagc Alignment from GeneWise ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG gatcaagaccagggagcctatttttttctgaaaactcttttctcttttagATCTGGCAGACATTCTTTGGAGGTCAATACCTACTTCTCCTTACAGGTCTGTTCTCTGTCTACACTGGCTTTATTTCTACTGAGTGTTATAGCCAGGCAGCTACTATCTTTCCATCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCCGGCTGGCTgtcagtctataacggtgggttcatgtacaggttctgatatgaagcatagc #### Tcirg1_ID177_10 --> 2 - 0 Original Alignment ctCCCTACACCATCATCACATTCCCCTTTCTCTTCGCTGTGATGTTTGGCGATGTGGGGCACGGACTGCTCATGTTTCTCTTTGCCCTGGCCATGGTCCTCACTGAAAACCGTCCAGCTGTGAAGGCTGCACAAAACGAG tatatacagtatcatgtgaaagcccactacttttcaagtttgcttgacagctCCCTACACTGTCACCACATTCCCATTTCTATTCACTGTGATGTTTGGTGATGTTGGACACGGATTGCTTATGTTTCTTTTCGCCCTAGCAATGGTCCTCACTGATAACCATCCGGCTGTGAAAACTGCAGAAAACAAGgtaagtgtttttattgatctatcagaaacaagagagagagacaaaccaga Alignment from CESAR ctCCCTACACCATCATCACATTCCCCTTTCTCTTCGCTGTGATGTTTGGCGATGTGGGGCACGGACTGCTCATGTTTCTCTTTGCCCTGGCCATGGTCCTCACTGAAAACCGTCCAGCTGTGAAGGCTGCACAAAACGAG tatatacagtatcatgtgaaagcccactacttttcaagtttgcttgacagctCCCTACACTGTCACCACATTCCCATTTCTATTCACTGTGATGTTTGGTGATGTTGGACACGGATTGCTTATGTTTCTTTTCGCCCTAGCAATGGTCCTCACTGATAACCATCCGGCTGTGAAAACTGCAGAAAACAAGgtaagtgtttttattgatctatcagaaacaagagagagagacaaaccaga Alignment from Spaln_aa2Genome CTCCCTACACCATCATCACATTCCCCTTTCTCTTCGCTGTGATGTTTGGCGATGTGGGGCACGGACTGCTCATGTTTCTCTTTGCCCTGGCCATGGTCCTCACTGAAAACCGTCCAGCTGTGAAGGCTGCACAAAACGAG tatatacagtatcatgtgaaagcccactacttttcaagtttgcttgacagCTCCCTACACTGTCACCACATTCCCATTTCTATTCACTGTGATGTTTGGTGATGTTGGACACGGATTGCTTATGTTTCTTTTCGCCCTAGCAATGGTCCTCACTGATAACCATCCGGCTGTGAAAACTGCAGAAAACAAGgtaagtgtttttattgatctatcagaaacaagagagagagacaaaccaga Alignment from Spaln_nt2Genome CTCCCTACACCATCATCACATTCCCCTTTCTCTTCGCTGTGATGTTTGGCGATGTGGGGCACGGACTGCTCATGTTTCTCTTTGCCCTGGCCATGGTCCTCACTGAAAACCGTCCAGCTGTGAAGGCTGCACAAAACGAG tatatacagtatcatgtgaaagcccactacttttcaagtttgcttgacagCTCCCTACACTGTCACCACATTCCCATTTCTATTCACTGTGATGTTTGGTGATGTTGGACACGGATTGCTTATGTTTCTTTTCGCCCTAGCAATGGTCCTCACTGATAACCATCCGGCTGTGAAAACTGCAGAAAACAAGgtaagtgtttttattgatctatcagaaacaagagagagagacaaaccaga Alignment from Pairagon CTCCCTACACCATCATCACATTCCCCTTTCTCTTCGCTGTGATGTTTGGCGATGTGGGGCACGGACTGCTCATGTTTCTCTTTGCCCTGGCCATGGTCCTCACTGAAAACCGTCCAGCTGTGAAGGCTGCACAAAACGAG tatatacagtatcatgtgaaagcccactacttttcaagtttgcttgacagCTCCCTACACTGTCACCACATTCCCATTTCTATTCACTGTGATGTTTGGTGATGTTGGACACGGATTGCTTATGTTTCTTTTCGCCCTAGCAATGGTCCTCACTGATAACCATCCGGCTGTGAAAACTGCAGAAAACAAGgtaagtgtttttattgatctatcagaaacaagagagagagacaaaccaga Alignment from Exonerate_protein2genome CTCCCTACACCATCATCACATTCCCCTTTCTCTTCGCTGTGATGTTTGGCGATGTGGGGCACGGACTGCTCATGTTTCTCTTTGCCCTGGCCATGGTCCTCACTGAAAACCGTCCAGCTGTGAAGGCTGCACAAAACGAG tatatacagtatcatgtgaaagcccactacttttcaagtttgcttgacagCTCCCTACACTGTCACCACATTCCCATTTCTATTCACTGTGATGTTTGGTGATGTTGGACACGGATTGCTTATGTTTCTTTTCGCCCTAGCAATGGTCCTCACTGATAACCATCCGGCTGTGAAAACTGCAGAAAACAAGgtaagtgtttttattgatctatcagaaacaagagagagagacaaaccaga Alignment from Exonerate_coding2genome CTCCCTACACCATCATCACATTCCCCTTTCTCTTCGCTGTGATGTTTGGCGATGTGGGGCACGGACTGCTCATGTTTCTCTTTGCCCTGGCCATGGTCCTCACTGAAAACCGTCCAGCTGTGAAGGCTGCACAAAACGAG tatatacagtatcatgtgaaagcccactacttttcaagtttgcttgacagCTCCCTACACTGTCACCACATTCCCATTTCTATTCACTGTGATGTTTGGTGATGTTGGACACGGATTGCTTATGTTTCTTTTCGCCCTAGCAATGGTCCTCACTGATAACCATCCGGCTGTGAAAACTGCAGAAAACAAGgtaagtgtttttattgatctatcagaaacaagagagagagacaaaccaga Alignment from GeneWise CTCCCTACACCATCATCACATTCCCCTTTCTCTTCGCTGTGATGTTTGGCGATGTGGGGCACGGACTGCTCATGTTTCTCTTTGCCCTGGCCATGGTCCTCACTGAAAACCGTCCAGCTGTGAAGGCTGCACAAAACGAG tatatacagtatcatgtgaaagcccactacttttcaagtttgcttgacagCTCCCTACACTGTCACCACATTCCCATTTCTATTCACTGTGATGTTTGGTGATGTTGGACACGGATTGCTTATGTTTCTTTTCGCCCTAGCAATGGTCCTCACTGATAACCATCCGGCTGTGAAAACTGCAGAAAACAAGgtaagtgtttttattgatctatcagaaacaagagagagagacaaaccaga #### Tcirg1_ID184_3 --> 2 - 0 Original Alignment ccTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG gcttgaccatgtggaatttcttctggtccatattaacaatttcactacagccTTCTTGAAAGAGGAAGTGCCCTGGGCTAGTCTAACCCTTGCCCCACCTGAGGGTACATTACCAGCACCACCTCCAAGGGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCTCAGCTGCACCATTTACGACTATATTCATCTGTGCTAGGCCAGAGCCACAGCCCACCAgtaagctcctagtcaaaagagccccagtccaccagtttgctcttagttgg Alignment from CESAR ccTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG gcttgaccatgtggaatttcttctggtccatattaacaatttcactacagccTTCTTGAAAGAGGAAGTGCCCTGGGCTAGTCTAACCCTTGCCCCACCTGAGGGTACATTACCAGCACCACCTCCAAGGGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCTCAGCTGCACCATTTACGACTATATTCATCTGTGCTAGGCCAGAGCCACAGCCCACCAgtaagctcctagtcaaaagagccccagtccaccagtttgctcttagttgg Alignment from Spaln_aa2Genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG gcttgaccatgtggaatttcttctggtccatattaacaatttcactacagCCTTCTTGAAAGAGGAAGTGCCCTGGGCTAGTCTAACCCTTGCCCCACCTGAGGGTACATTACCAGCACCACCTCCAAGGGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCTCAGCTGCACCATTTACGACTATATTCATCTGTGCTAGGCCAGAGCCACAGCCCACCAgtaagctcctagtcaaaagagccccagtccaccagtttgctcttagttgg Alignment from Spaln_nt2Genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG gcttgaccatgtggaatttcttctggtccatattaacaatttcactacagCCTTCTTGAAAGAGGAAGTGCCCTGGGCTAGTCTAACCCTTGCCCCACCTGAGGGTACATTACCAGCACCACCTCCAAGGGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCTCAGCTGCACCATTTACGACTATATTCATCTGTGCTAGGCCAGAGCCACAGCCCACCAgtaagctcctagtcaaaagagccccagtccaccagtttgctcttagttgg Alignment from Pairagon CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG gcttgaccatgtggaatttcttctggtccatattaacaatttcactacagCCTTCTTGAAAGAGGAAGTGCCCTGGGCTAGTCTAACCCTTGCCCCACCTGAGGGTACATTACCAGCACCACCTCCAAGGGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCTCAGCTGCACCATTTACGACTATATTCATCTGTGCTAGGCCAGAGCCACAGCCCACCAgtaagctcctagtcaaaagagccccagtccaccagtttgctcttagttgg Alignment from Exonerate_protein2genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG gcttgaccatgtggaatttcttctggtccatattaacaatttcactacagCCTTCTTGAAAGAGGAAGTGCCCTGGGCTAGTCTAACCCTTGCCCCACCTGAGGGTACATTACCAGCACCACCTCCAAGGGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCTCAGCTGCACCATTTACGACTATATTCATCTGTGCTAGGCCAGAGCCACAGCCCACCAgtaagctcctagtcaaaagagccccagtccaccagtttgctcttagttgg Alignment from Exonerate_coding2genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG gcttgaccatgtggaatttcttctggtccatattaacaatttcactacagCCTTCTTGAAAGAGGAAGTGCCCTGGGCTAGTCTAACCCTTGCCCCACCTGAGGGTACATTACCAGCACCACCTCCAAGGGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCTCAGCTGCACCATTTACGACTATATTCATCTGTGCTAGGCCAGAGCCACAGCCCACCAgtaagctcctagtcaaaagagccccagtccaccagtttgctcttagttgg Alignment from GeneWise CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG gcttgaccatgtggaatttcttctggtccatattaacaatttcactacagCCTTCTTGAAAGAGGAAGTGCCCTGGGCTAGTCTAACCCTTGCCCCACCTGAGGGTACATTACCAGCACCACCTCCAAGGGACCTACTACGCATCCAGGAGGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCTCAGCTGCACCATTTACGACTATATTCATCTGTGCTAGGCCAGAGCCACAGCCCACCAgtaagctcctagtcaaaagagccccagtccaccagtttgctcttagttgg #### Tcirg1_ID185_2 --> 0 - 1 Original Alignment CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTa agaaggtaccaggcactgccacagtggttgtcaatcttttcaaactgtagTTCAATGAGTCTGTAAGTGCATTCCAGAGACGCTTTGTGGTAGATGTGCAGCACTGTGAGGAGCTGGACAAGACATTTagtgagatgtcctcagcggatttgggatgacagagtgtactttgtttgccc Alignment from CESAR CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTa agaaggtaccaggcactgccacagtggttgtcaatcttttcaaactgtagTTCAATGAGTCTGTAAGTGCATTCCAGAGACGCTTTGTGGTAGATGTGCAGCACTGTGAGGAGCTGGACAAGACATTTagtgagatgtcctcagcggatttgggatgacagagtgtactttgtttgccc Alignment from Spaln_aa2Genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA agaaggtaccaggcactgccacagtggttgtcaatcttttcaaactgtagTTCAATGAGTCTGTAAGTGCATTCCAGAGACGCTTTGTGGTAGATGTGCAGCACTGTGAGGAGCTGGACAAGACATTTAgtgagatgtcctcagcggatttgggatgacagagtgtactttgtttgccc Alignment from Spaln_nt2Genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA agaaggtaccaggcactgccacagtggttgtcaatcttttcaaactgtagTTCAATGAGTCTGTAAGTGCATTCCAGAGACGCTTTGTGGTAGATGTGCAGCACTGTGAGGAGCTGGACAAGACATTTAgtgagatgtcctcagcggatttgggatgacagagtgtactttgtttgccc Alignment from Pairagon CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA agaaggtaccaggcactgccacagtggttgtcaatcttttcaaactgtagTTCAATGAGTCTGTAAGTGCATTCCAGAGACGCTTTGTGGTAGATGTGCAGCACTGTGAGGAGCTGGACAAGACATTTAgtgagatgtcctcagcggatttgggatgacagagtgtactttgtttgccc Alignment from Exonerate_protein2genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA agaaggtaccaggcactgccacagtggttgtcaatcttttcaaactgtagTTCAATGAGTCTGTAAGTGCATTCCAGAGACGCTTTGTGGTAGATGTGCAGCACTGTGAGGAGCTGGACAAGACATTTAgtgagatgtcctcagcggatttgggatgacagagtgtactttgtttgccc Alignment from Exonerate_coding2genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA agaaggtaccaggcactgccacagtggttgtcaatcttttcaaactgtagTTCAATGAGTCTGTAAGTGCATTCCAGAGACGCTTTGTGGTAGATGTGCAGCACTGTGAGGAGCTGGACAAGACATTTAgtgagatgtcctcagcggatttgggatgacagagtgtactttgtttgccc Alignment from GeneWise CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA agaaggtaccaggcactgccacagtggttgtcaatcttttcaaactgtagTTCAATGAGTCTGTAAGTGCATTCCAGAGACGCTTTGTGGTAGATGTGCAGCACTGTGAGGAGCTGGACAAGACATTTAgtgagatgtcctcagcggatttgggatgacagagtgtactttgtttgccc #### Tctn3_ID7993_8 --> 0 - 0 Original Alignment TTCCAGGTTCCTGTGACGCTTGCCTCACAAGCCAGCCCTCCTCTGTTGGCTGGAAACACATGTCAGAATATCGTTTCCCAG cagcttggctatcaatacatccctcaactctctccaacctctggctacagTTCCAGGTTCCTGTAACACTTTCCCCACAAGCCAGCCCCCCTTTACTGGCTGGAAACACATGTCAGAATATCATTTCACAAgttggtaagatctaatccacttcacacagaactgcatcttgtctacctct Alignment from CESAR TTCCAGGTTCCTGTGACGCTTGCCTCACAAGCCAGCCCTCCTCTGTTGGCTGGAAACACATGTCAGAATATCGTTTCCCAG cagcttggctatcaatacatccctcaactctctccaacctctggctacagTTCCAGGTTCCTGTAACACTTTCCCCACAAGCCAGCCCCCCTTTACTGGCTGGAAACACATGTCAGAATATCATTTCACAAgttggtaagatctaatccacttcacacagaactgcatcttgtctacctct Alignment from Spaln_aa2Genome TTCCAGGTTCCTGTGACGCTTGCCTCACAAGCCAGCCCTCCTCTGTTGGCTGGAAACACATGTCAGAATATCGTTTCCCAG cagcttggctatcaatacatccctcaactctctccaacctctggctacagTTCCAGGTTCCTGTAACACTTTCCCCACAAGCCAGCCCCCCTTTACTGGCTGGAAACACATGTCAGAATATCATTTCACAAgttggtaagatctaatccacttcacacagaactgcatcttgtctacctct Alignment from Spaln_nt2Genome TTCCAGGTTCCTGTGACGCTTGCCTCACAAGCCAGCCCTCCTCTGTTGGCTGGAAACACATGTCAGAATATCGTTTCCCAG cagcttggctatcaatacatccctcaactctctccaacctctggctacagTTCCAGGTTCCTGTAACACTTTCCCCACAAGCCAGCCCCCCTTTACTGGCTGGAAACACATGTCAGAATATCATTTCACAAgttggtaagatctaatccacttcacacagaactgcatcttgtctacctct Alignment from Pairagon TTCCAGGTTCCTGTGACGCTTGCCTCACAAGCCAGCCCTCCTCTGTTGGCTGGAAACACATGTCAGAATATCGTTTCCCAG cagcttggctatcaatacatccctcaactctctccaacctctggctacagTTCCAGGTTCCTGTAACACTTTCCCCACAAGCCAGCCCCCCTTTACTGGCTGGAAACACATGTCAGAATATCATTTCACAAgttggtaagatctaatccacttcacacagaactgcatcttgtctacctct Alignment from Exonerate_protein2genome TTCCAGGTTCCTGTGACGCTTGCCTCACAAGCCAGCCCTCCTCTGTTGGCTGGAAACACATGTCAGAATATCGTTTCCCAG cagcttggctatcaatacatccctcaactctctccaacctctggctacagTTCCAGGTTCCTGTAACACTTTCCCCACAAGCCAGCCCCCCTTTACTGGCTGGAAACACATGTCAGAATATCATTTCACAAgttggtaagatctaatccacttcacacagaactgcatcttgtctacctct Alignment from Exonerate_coding2genome TTCCAGGTTCCTGTGACGCTTGCCTCACAAGCCAGCCCTCCTCTGTTGGCTGGAAACACATGTCAGAATATCGTTTCCCAG cagcttggctatcaatacatccctcaactctctccaacctctggctacagTTCCAGGTTCCTGTAACACTTTCCCCACAAGCCAGCCCCCCTTTACTGGCTGGAAACACATGTCAGAATATCATTTCACAAgttggtaagatctaatccacttcacacagaactgcatcttgtctacctct Alignment from GeneWise TTCCAGGTTCCTGTGACGCTTGCCTCACAAGCCAGCCCTCCTCTGTTGGCTGGAAACACATGTCAGAATATCGTTTCCCAG cagcttggctatcaatacatccctcaactctctccaacctctggctacagTTCCAGGTTCCTGTAACACTTTCCCCACAAGCCAGCCCCCCTTTACTGGCTGGAAACACATGTCAGAATATCATTTCACAAgttggtaagatctaatccacttcacacagaactgcatcttgtctacctct #### Tctn3_ID7994_7 --> 0 - 0 Original Alignment GTTCCAAGAGGTGTGACTGATCTTCAGAATATGAAG ggtgataatttgcaaactacccccactagacctttgtgttttcctatcagGTTCCACGAGGTGTTACTGATCTTCAGAATATGAAGgtcagttgctactggtcccagctgacataacaacaagtagcctggagata Alignment from CESAR GTTCCAAGAGGTGTGACTGATCTTCAGAATATGAAG ggtgataatttgcaaactacccccactagacctttgtgttttcctatcagGTTCCACGAGGTGTTACTGATCTTCAGAATATGAAGgtcagttgctactggtcccagctgacataacaacaagtagcctggagata Alignment from Spaln_aa2Genome GTTCCAAGAGGTGTGACTGATCTTCAGAATATGAAG ggtgataatttgcaaactacccccactagacctttgtgttttcctatcagGTTCCACGAGGTGTTACTGATCTTCAGAATATGAAGgtcagttgctactggtcccagctgacataacaacaagtagcctggagata Alignment from Spaln_nt2Genome GTTCCAAGAGGTGTGACTGATCTTCAGAATATGAAG ggtgataatttgcaaactacccccactagacctttgtgttttcctatcagGTTCCACGAGGTGTTACTGATCTTCAGAATATGAAGgtcagttgctactggtcccagctgacataacaacaagtagcctggagata Alignment from Pairagon GTTCCAAGAGGTGTGACTGATCTTCAGAATATGAAG ggtgataatttgcaaactacccccactagacctttgtgttttcctatcagGTTCCACGAGGTGTTACTGATCTTCAGAATATGAAGgtcagttgctactggtcccagctgacataacaacaagtagcctggagata Alignment from Exonerate_protein2genome GTTCCAAGAGGTGTGACTGATCTTCAGAATATGAAG ggtgataatttgcaaactacccccactagacctttgtgttttcctatcagGTTCCACGAGGTGTTACTGATCTTCAGAATATGAAGgtcagttgctactggtcccagctgacataacaacaagtagcctggagata Alignment from Exonerate_coding2genome GTTCCAAGAGGTGTGACTGATCTTCAGAATATGAAG ggtgataatttgcaaactacccccactagacctttgtgttttcctatcagGTTCCACGAGGTGTTACTGATCTTCAGAATATGAAGgtcagttgctactggtcccagctgacataacaacaagtagcctggagata Alignment from GeneWise GTTCCAAGAGGTGTGACTGATCTTCAGAATATGAAG ggtgataatttgcaaactacccccactagacctttgtgttttcctatcagGTTCCACGAGGTGTTACTGATCTTCAGAATATGAAGgtcagttgctactggtcccagctgacataacaacaagtagcctggagata #### Tctn3_ID7995_6 --> 2 - 0 Original Alignment gtTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ctagcgatgttttctcaggtacgggggaggccgttctctgtgctctgcaggaTTTCTAGAGACTAAGAGTATGACCTCTTCCCGTTTCTTTAAGGACCTATCCAGTAGCTGTACCTCTGAGCCAGCTCTGGATGCAGTTTCAGATTACAACTTCAGAGTCTTGAGGgtaagtcacagccaggtttctgcttctgatttctcactgatggtaggtgc Alignment from CESAR gtTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ctagcgatgttttctcaggtacgggggaggccgttctctgtgctctgcaggaTTTCTAGAGACTAAGAGTATGACCTCTTCCCGTTTCTTTAAGGACCTATCCAGTAGCTGTACCTCTGAGCCAGCTCTGGATGCAGTTTCAGATTACAACTTCAGAGTCTTGAGGgtaagtcacagccaggtttctgcttctgatttctcactgatggtaggtgc Alignment from Spaln_aa2Genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ctagcgatgttttctcaggtacgggggaggccgttctctgtgctctgcagGATTTCTAGAGACTAAGAGTATGACCTCTTCCCGTTTCTTTAAGGACCTATCCAGTAGCTGTACCTCTGAGCCAGCTCTGGATGCAGTTTCAGATTACAACTTCAGAGTCTTGAGGgtaagtcacagccaggtttctgcttctgatttctcactgatggtaggtgc Alignment from Spaln_nt2Genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ctagcgatgttttctcaggtacgggggaggccgttctctgtgctctgcagGATTTCTAGAGACTAAGAGTATGACCTCTTCCCGTTTCTTTAAGGACCTATCCAGTAGCTGTACCTCTGAGCCAGCTCTGGATGCAGTTTCAGATTACAACTTCAGAGTCTTGAGGgtaagtcacagccaggtttctgcttctgatttctcactgatggtaggtgc Alignment from Pairagon GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ctagcgatgttttctcaggtacgggggaggccgttctctgtgctctgcagGATTTCTAGAGACTAAGAGTATGACCTCTTCCCGTTTCTTTAAGGACCTATCCAGTAGCTGTACCTCTGAGCCAGCTCTGGATGCAGTTTCAGATTACAACTTCAGAGTCTTGAGGgtaagtcacagccaggtttctgcttctgatttctcactgatggtaggtgc Alignment from Exonerate_protein2genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ctagcgatgttttctcaggtacgggggaggccgttctctgtgctctgcagGATTTCTAGAGACTAAGAGTATGACCTCTTCCCGTTTCTTTAAGGACCTATCCAGTAGCTGTACCTCTGAGCCAGCTCTGGATGCAGTTTCAGATTACAACTTCAGAGTCTTGAGGgtaagtcacagccaggtttctgcttctgatttctcactgatggtaggtgc Alignment from Exonerate_coding2genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ctagcgatgttttctcaggtacgggggaggccgttctctgtgctctgcagGATTTCTAGAGACTAAGAGTATGACCTCTTCCCGTTTCTTTAAGGACCTATCCAGTAGCTGTACCTCTGAGCCAGCTCTGGATGCAGTTTCAGATTACAACTTCAGAGTCTTGAGGgtaagtcacagccaggtttctgcttctgatttctcactgatggtaggtgc Alignment from GeneWise GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ctagcgatgttttctcaggtacgggggaggccgttctctgtgctctgcagGATTTCTAGAGACTAAGAGTATGACCTCTTCCCGTTTCTTTAAGGACCTATCCAGTAGCTGTACCTCTGAGCCAGCTCTGGATGCAGTTTCAGATTACAACTTCAGAGTCTTGAGGgtaagtcacagccaggtttctgcttctgatttctcactgatggtaggtgc #### Tctn3_ID7997_4 --> 2 - 0 Original Alignment caAAAGCAAACTATTTCCAGAAGCTCCAAACAGTCAATGCAACCAACTTCCAGGCCCTGGCTGCAGAGTTCGGAGGCCAGTCCTTCCCTTCAATGCCACCAGAAACCCAGCCGCCAGTACTATTCTATAGG aacccgttctaactccccattctctgagtagccacttttcttttttacagcaAAAGCAAATTATTTTCAGAAGCTTCATACAGTCAATGCCACCAATTTCCAGGCTCTTGCAGCAGAGTTTGGAGGTCAGTCCTTCCCATCAATGCCACCAGAGACCCAGCCTCCAGTATTATTCTACCGAgtaagtcctgggggtcagcaacagcaatggggaccaggtagcctgttaac Alignment from CESAR caAAAGCAAACTATTTCCAGAAGCTCCAAACAGTCAATGCAACCAACTTCCAGGCCCTGGCTGCAGAGTTCGGAGGCCAGTCCTTCCCTTCAATGCCACCAGAAACCCAGCCGCCAGTACTATTCTATAGG aacccgttctaactccccattctctgagtagccacttttcttttttacagcaAAAGCAAATTATTTTCAGAAGCTTCATACAGTCAATGCCACCAATTTCCAGGCTCTTGCAGCAGAGTTTGGAGGTCAGTCCTTCCCATCAATGCCACCAGAGACCCAGCCTCCAGTATTATTCTACCGAgtaagtcctgggggtcagcaacagcaatggggaccaggtagcctgttaac Alignment from Spaln_aa2Genome CAAAAGCAAACTATTTCCAGAAGCTCCAAACAGTCAATGCAACCAACTTCCAGGCCCTGGCTGCAGAGTTCGGAGGCCAGTCCTTCCCTTCAATGCCACCAGAAACCCAGCCGCCAGTACTATTCTATAGG aacccgttctaactccccattctctgagtagccacttttcttttttacagCAAAAGCAAATTATTTTCAGAAGCTTCATACAGTCAATGCCACCAATTTCCAGGCTCTTGCAGCAGAGTTTGGAGGTCAGTCCTTCCCATCAATGCCACCAGAGACCCAGCCTCCAGTATTATTCTACCGAgtaagtcctgggggtcagcaacagcaatggggaccaggtagcctgttaac Alignment from Spaln_nt2Genome CAAAAGCAAACTATTTCCAGAAGCTCCAAACAGTCAATGCAACCAACTTCCAGGCCCTGGCTGCAGAGTTCGGAGGCCAGTCCTTCCCTTCAATGCCACCAGAAACCCAGCCGCCAGTACTATTCTATAGG aacccgttctaactccccattctctgagtagccacttttcttttttacagCAAAAGCAAATTATTTTCAGAAGCTTCATACAGTCAATGCCACCAATTTCCAGGCTCTTGCAGCAGAGTTTGGAGGTCAGTCCTTCCCATCAATGCCACCAGAGACCCAGCCTCCAGTATTATTCTACCGAgtaagtcctgggggtcagcaacagcaatggggaccaggtagcctgttaac Alignment from Pairagon CAAAAGCAAACTATTTCCAGAAGCTCCAAACAGTCAATGCAACCAACTTCCAGGCCCTGGCTGCAGAGTTCGGAGGCCAGTCCTTCCCTTCAATGCCACCAGAAACCCAGCCGCCAGTACTATTCTATAGG aacccgttctaactccccattctctgagtagccacttttcttttttacagCAAAAGCAAATTATTTTCAGAAGCTTCATACAGTCAATGCCACCAATTTCCAGGCTCTTGCAGCAGAGTTTGGAGGTCAGTCCTTCCCATCAATGCCACCAGAGACCCAGCCTCCAGTATTATTCTACCGAgtaagtcctgggggtcagcaacagcaatggggaccaggtagcctgttaac Alignment from Exonerate_protein2genome CAAAAGCAAACTATTTCCAGAAGCTCCAAACAGTCAATGCAACCAACTTCCAGGCCCTGGCTGCAGAGTTCGGAGGCCAGTCCTTCCCTTCAATGCCACCAGAAACCCAGCCGCCAGTACTATTCTATAGG aacccgttctaactccccattctctgagtagccacttttcttttttacagCAAAAGCAAATTATTTTCAGAAGCTTCATACAGTCAATGCCACCAATTTCCAGGCTCTTGCAGCAGAGTTTGGAGGTCAGTCCTTCCCATCAATGCCACCAGAGACCCAGCCTCCAGTATTATTCTACCGAgtaagtcctgggggtcagcaacagcaatggggaccaggtagcctgttaac Alignment from Exonerate_coding2genome CAAAAGCAAACTATTTCCAGAAGCTCCAAACAGTCAATGCAACCAACTTCCAGGCCCTGGCTGCAGAGTTCGGAGGCCAGTCCTTCCCTTCAATGCCACCAGAAACCCAGCCGCCAGTACTATTCTATAGG aacccgttctaactccccattctctgagtagccacttttcttttttacagCAAAAGCAAATTATTTTCAGAAGCTTCATACAGTCAATGCCACCAATTTCCAGGCTCTTGCAGCAGAGTTTGGAGGTCAGTCCTTCCCATCAATGCCACCAGAGACCCAGCCTCCAGTATTATTCTACCGAgtaagtcctgggggtcagcaacagcaatggggaccaggtagcctgttaac Alignment from GeneWise CAAAAGCAAACTATTTCCAGAAGCTCCAAACAGTCAATGCAACCAACTTCCAGGCCCTGGCTGCAGAGTTCGGAGGCCAGTCCTTCCCTTCAATGCCACCAGAAACCCAGCCGCCAGTACTATTCTATAGG aacccgttctaactccccattctctgagtagccacttttcttttttacagCAAAAGCAAATTATTTTCAGAAGCTTCATACAGTCAATGCCACCAATTTCCAGGCTCTTGCAGCAGAGTTTGGAGGTCAGTCCTTCCCATCAATGCCACCAGAGACCCAGCCTCCAGTATTATTCTACCGAgtaagtcctgggggtcagcaacagcaatggggaccaggtagcctgttaac #### Tdrd1_ID12212_13 --> 2 - 1 Original Alignment agGATGATCAGTGGTACCGCGCCTCGGTTCTGGCCTACGCTTCTGAAGAATCTGTCCTGGTTGGATATGTCGATTATGGGAACTTTGAGATTCTCAGTCTGAAAAGACTTTGTCCCATAATTCCAAAGTTGTTGGATTTGCCGATGCAAGCTCTAAATTGTGTGCTGGCAg gcgctgtgatgggctaatagggcacagagcgtctgaccctccacccctagagGATGATCAATGGTACTGCACCACAGTGTTGGCCTATGCTTCTCAAGAATCTGTTCTGGTAGGATATGTTGATTATGGGAACTTTGAGATTCTAAGCTTGAAACGTCTTTGTCCCATTATTCCAAAGTTGTTGGATTTGCCGATGCAAGCCCTGAATTGTGTGCTGGCAggtaagatagagcaggtattcatagagggcagtgtgcagattgtttgagga Alignment from CESAR agGATGATCAGTGGTACCGCGCCTCGGTTCTGGCCTACGCTTCTGAAGAATCTGTCCTGGTTGGATATGTCGATTATGGGAACTTTGAGATTCTCAGTCTGAAAAGACTTTGTCCCATAATTCCAAAGTTGTTGGATTTGCCGATGCAAGCTCTAAATTGTGTGCTGGCAg gcgctgtgatgggctaatagggcacagagcgtctgaccctccacccctagagGATGATCAATGGTACTGCACCACAGTGTTGGCCTATGCTTCTCAAGAATCTGTTCTGGTAGGATATGTTGATTATGGGAACTTTGAGATTCTAAGCTTGAAACGTCTTTGTCCCATTATTCCAAAGTTGTTGGATTTGCCGATGCAAGCCCTGAATTGTGTGCTGGCAggtaagatagagcaggtattcatagagggcagtgtgcagattgtttgagga Alignment from Spaln_aa2Genome AGGATGATCAGTGGTACCGCGCCTCGGTTCTGGCCTACGCTTCTGAAGAATCTGTCCTGGTTGGATATGTCGATTATGGGAACTTTGAGATTCTCAGTCTGAAAAGACTTTGTCCCATAATTCCAAAGTTGTTGGATTTGCCGATGCAAGCTCTAAATTGTGTGCTGGCAG gcgctgtgatgggctaatagggcacagagcgtctgaccctccacccctagAGGATGATCAATGGTACTGCACCACAGTGTTGGCCTATGCTTCTCAAGAATCTGTTCTGGTAGGATATGTTGATTATGGGAACTTTGAGATTCTAAGCTTGAAACGTCTTTGTCCCATTATTCCAAAGTTGTTGGATTTGCCGATGCAAGCCCTGAATTGTGTGCTGGCAGgtaagatagagcaggtattcatagagggcagtgtgcagattgtttgagga Alignment from Spaln_nt2Genome AGGATGATCAGTGGTACCGCGCCTCGGTTCTGGCCTACGCTTCTGAAGAATCTGTCCTGGTTGGATATGTCGATTATGGGAACTTTGAGATTCTCAGTCTGAAAAGACTTTGTCCCATAATTCCAAAGTTGTTGGATTTGCCGATGCAAGCTCTAAATTGTGTGCTGGCAG gcgctgtgatgggctaatagggcacagagcgtctgaccctccacccctagAGGATGATCAATGGTACTGCACCACAGTGTTGGCCTATGCTTCTCAAGAATCTGTTCTGGTAGGATATGTTGATTATGGGAACTTTGAGATTCTAAGCTTGAAACGTCTTTGTCCCATTATTCCAAAGTTGTTGGATTTGCCGATGCAAGCCCTGAATTGTGTGCTGGCAGgtaagatagagcaggtattcatagagggcagtgtgcagattgtttgagga Alignment from Pairagon AGGATGATCAGTGGTACCGCGCCTCGGTTCTGGCCTACGCTTCTGAAGAATCTGTCCTGGTTGGATATGTCGATTATGGGAACTTTGAGATTCTCAGTCTGAAAAGACTTTGTCCCATAATTCCAAAGTTGTTGGATTTGCCGATGCAAGCTCTAAATTGTGTGCTGGCAG gcgctgtgatgggctaatagggcacagagcgtctgaccctccacccctagAGGATGATCAATGGTACTGCACCACAGTGTTGGCCTATGCTTCTCAAGAATCTGTTCTGGTAGGATATGTTGATTATGGGAACTTTGAGATTCTAAGCTTGAAACGTCTTTGTCCCATTATTCCAAAGTTGTTGGATTTGCCGATGCAAGCCCTGAATTGTGTGCTGGCAGgtaagatagagcaggtattcatagagggcagtgtgcagattgtttgagga Alignment from Exonerate_protein2genome AGGATGATCAGTGGTACCGCGCCTCGGTTCTGGCCTACGCTTCTGAAGAATCTGTCCTGGTTGGATATGTCGATTATGGGAACTTTGAGATTCTCAGTCTGAAAAGACTTTGTCCCATAATTCCAAAGTTGTTGGATTTGCCGATGCAAGCTCTAAATTGTGTGCTGGCAG gcgctgtgatgggctaatagggcacagagcgtctgaccctccacccctagAGGATGATCAATGGTACTGCACCACAGTGTTGGCCTATGCTTCTCAAGAATCTGTTCTGGTAGGATATGTTGATTATGGGAACTTTGAGATTCTAAGCTTGAAACGTCTTTGTCCCATTATTCCAAAGTTGTTGGATTTGCCGATGCAAGCCCTGAATTGTGTGCTGGCAGgtaagatagagcaggtattcatagagggcagtgtgcagattgtttgagga Alignment from Exonerate_coding2genome AGGATGATCAGTGGTACCGCGCCTCGGTTCTGGCCTACGCTTCTGAAGAATCTGTCCTGGTTGGATATGTCGATTATGGGAACTTTGAGATTCTCAGTCTGAAAAGACTTTGTCCCATAATTCCAAAGTTGTTGGATTTGCCGATGCAAGCTCTAAATTGTGTGCTGGCAG gcgctgtgatgggctaatagggcacagagcgtctgaccctccacccctagAGGATGATCAATGGTACTGCACCACAGTGTTGGCCTATGCTTCTCAAGAATCTGTTCTGGTAGGATATGTTGATTATGGGAACTTTGAGATTCTAAGCTTGAAACGTCTTTGTCCCATTATTCCAAAGTTGTTGGATTTGCCGATGCAAGCCCTGAATTGTGTGCTGGCAGgtaagatagagcaggtattcatagagggcagtgtgcagattgtttgagga Alignment from GeneWise AGGATGATCAGTGGTACCGCGCCTCGGTTCTGGCCTACGCTTCTGAAGAATCTGTCCTGGTTGGATATGTCGATTATGGGAACTTTGAGATTCTCAGTCTGAAAAGACTTTGTCCCATAATTCCAAAGTTGTTGGATTTGCCGATGCAAGCTCTAAATTGTGTGCTGGCAG gcgctgtgatgggctaatagggcacagagcgtctgaccctccacccctagAGGATGATCAATGGTACTGCACCACAGTGTTGGCCTATGCTTCTCAAGAATCTGTTCTGGTAGGATATGTTGATTATGGGAACTTTGAGATTCTAAGCTTGAAACGTCTTTGTCCCATTATTCCAAAGTTGTTGGATTTGCCGATGCAAGCCCTGAATTGTGTGCTGGCAGgtaagatagagcaggtattcatagagggcagtgtgcagattgtttgagga #### Tdrd1_ID12215_16 --> 2 - 1 Original Alignment ccTTAGAGAAGCTCGATGACTTGAATCAGTCCTTAGCAGACTACTGTGCACAAAAGCCGCCCAATGGCTTTAAGGCAGAGATAGGGCGGCCTTGCTGTGCCTTTTTTTCAg gtaacaaggtattgatcttgaataggcctgattttcttcttttattatagcaTTGGATAAGCTTGATGACTTGAATCAGTCTTTAGCAGACTACTGTGCACAAAAGCCACCCAACAGATTTAAAGCAGAAATGGGTCGTCCTTGTTGTGCATTCTTTTCCagtgagatcaactttcaattcacatttatgtctggcccattatcccagggg Alignment from CESAR ccTTAGAGAAGCTCGATGACTTGAATCAGTCCTTAGCAGACTACTGTGCACAAAAGCCGCCCAATGGCTTTAAGGCAGAGATAGGGCGGCCTTGCTGTGCCTTTTTTTCAg gtaacaaggtattgatcttgaataggcctgattttcttcttttattatagcaTTGGATAAGCTTGATGACTTGAATCAGTCTTTAGCAGACTACTGTGCACAAAAGCCACCCAACAGATTTAAAGCAGAAATGGGTCGTCCTTGTTGTGCATTCTTTTCCagtgagatcaactttcaattcacatttatgtctggcccattatcccagggg Alignment from Spaln_aa2Genome CCTTAGAGAAGCTCGATGACTTGAATCAGTCCTTAGCAGACTACTGTGCACAAAAGCCGCCCAATGGCTTTAAGGCAGAGATAGGGCGGCCTTGCTGTGCCTTTTTTTCAG gtaacaaggtattgatcttgaataggcctgattttcttcttttattatagCATTGGATAAGCTTGATGACTTGAATCAGTCTTTAGCAGACTACTGTGCACAAAAGCCACCCAACAGATTTAAAGCAGAAATGGGTCGTCCTTGTTGTGCATTCTTTTCCAgtgagatcaactttcaattcacatttatgtctggcccattatcccagggg Alignment from Spaln_nt2Genome CCTTAGAGAAGCTCGATGACTTGAATCAGTCCTTAGCAGACTACTGTGCACAAAAGCCGCCCAATGGCTTTAAGGCAGAGATAGGGCGGCCTTGCTGTGCCTTTTTTTCAG gtaacaaggtattgatcttgaataggcctgattttcttcttttattatagCATTGGATAAGCTTGATGACTTGAATCAGTCTTTAGCAGACTACTGTGCACAAAAGCCACCCAACAGATTTAAAGCAGAAATGGGTCGTCCTTGTTGTGCATTCTTTTCCAgtgagatcaactttcaattcacatttatgtctggcccattatcccagggg Alignment from Pairagon CCTTAGAGAAGCTCGATGACTTGAATCAGTCCTTAGCAGACTACTGTGCACAAAAGCCGCCCAATGGCTTTAAGGCAGAGATAGGGCGGCCTTGCTGTGCCTTTTTTTCAG gtaacaaggtattgatcttgaataggcctgattttcttcttttattatagCATTGGATAAGCTTGATGACTTGAATCAGTCTTTAGCAGACTACTGTGCACAAAAGCCACCCAACAGATTTAAAGCAGAAATGGGTCGTCCTTGTTGTGCATTCTTTTCCAgtgagatcaactttcaattcacatttatgtctggcccattatcccagggg Alignment from Exonerate_protein2genome CCTTAGAGAAGCTCGATGACTTGAATCAGTCCTTAGCAGACTACTGTGCACAAAAGCCGCCCAATGGCTTTAAGGCAGAGATAGGGCGGCCTTGCTGTGCCTTTTTTTCAG gtaacaaggtattgatcttgaataggcctgattttcttcttttattatagCATTGGATAAGCTTGATGACTTGAATCAGTCTTTAGCAGACTACTGTGCACAAAAGCCACCCAACAGATTTAAAGCAGAAATGGGTCGTCCTTGTTGTGCATTCTTTTCCAgtgagatcaactttcaattcacatttatgtctggcccattatcccagggg Alignment from Exonerate_coding2genome CCTTAGAGAAGCTCGATGACTTGAATCAGTCCTTAGCAGACTACTGTGCACAAAAGCCGCCCAATGGCTTTAAGGCAGAGATAGGGCGGCCTTGCTGTGCCTTTTTTTCAG gtaacaaggtattgatcttgaataggcctgattttcttcttttattatagCATTGGATAAGCTTGATGACTTGAATCAGTCTTTAGCAGACTACTGTGCACAAAAGCCACCCAACAGATTTAAAGCAGAAATGGGTCGTCCTTGTTGTGCATTCTTTTCCAgtgagatcaactttcaattcacatttatgtctggcccattatcccagggg Alignment from GeneWise CCTTAGAGAAGCTCGATGACTTGAATCAGTCCTTAGCAGACTACTGTGCACAAAAGCCGCCCAATGGCTTTAAGGCAGAGATAGGGCGGCCTTGCTGTGCCTTTTTTTCAG gtaacaaggtattgatcttgaataggcctgattttcttcttttattatagCATTGGATAAGCTTGATGACTTGAATCAGTCTTTAGCAGACTACTGTGCACAAAAGCCACCCAACAGATTTAAAGCAGAAATGGGTCGTCCTTGTTGTGCATTCTTTTCCAgtgagatcaactttcaattcacatttatgtctggcccattatcccagggg #### Tdrd1_ID12216_17 --> 2 - 1 Original Alignment gtGACGGCAACTGGTACCGGGCTCTAGTCAAGGAGATCTTACCAAGTGGGAATGTTAAAGTCCACTTTGTGGATTACGGAAATGTTGAAGAAGTTACCACAGACCAACTCCAGGCGATATTACCACAGTTCTTACTACTTCCATTTCAGGGGATGCAGTGCTGGCTAGTAg aaatgaacataaaggacacatgggagagttcctgtcatgtctttttgcaggcGATGGCAACTGCTACCAGGCTTTAGTGAAGGAGATCCTGCCAAGTGGGAATGTCAGAGCACACTTTGTGGACTATGGCAATGTTGAAGAAGTTACCACAGATCAACTCCAGGCAATTTTACCCCAGTTTTTACTACTTCCATTCCAGGGAATGCAGTGCTGGGTAATAggtgagtgctacaaggtttttctcactttttggtggggcaactttgtagtt Alignment from CESAR gtGACGGCAACTGGTACCGGGCTCTAGTCAAGGAGATCTTACCAAGTGGGAATGTTAAAGTCCACTTTGTGGATTACGGAAATGTTGAAGAAGTTACCACAGACCAACTCCAGGCGATATTACCACAGTTCTTACTACTTCCATTTCAGGGGATGCAGTGCTGGCTAGTAg aaatgaacataaaggacacatgggagagttcctgtcatgtctttttgcaggcGATGGCAACTGCTACCAGGCTTTAGTGAAGGAGATCCTGCCAAGTGGGAATGTCAGAGCACACTTTGTGGACTATGGCAATGTTGAAGAAGTTACCACAGATCAACTCCAGGCAATTTTACCCCAGTTTTTACTACTTCCATTCCAGGGAATGCAGTGCTGGGTAATAggtgagtgctacaaggtttttctcactttttggtggggcaactttgtagtt Alignment from Spaln_aa2Genome GTGACGGCAACTGGTACCGGGCTCTAGTCAAGGAGATCTTACCAAGTGGGAATGTTAAAGTCCACTTTGTGGATTACGGAAATGTTGAAGAAGTTACCACAGACCAACTCCAGGCGATATTACCACAGTTCTTACTACTTCCATTTCAGGGGATGCAGTGCTGGCTAGTAG aaatgaacataaaggacacatgggagagttcctgtcatgtctttttgcagGCGATGGCAACTGCTACCAGGCTTTAGTGAAGGAGATCCTGCCAAGTGGGAATGTCAGAGCACACTTTGTGGACTATGGCAATGTTGAAGAAGTTACCACAGATCAACTCCAGGCAATTTTACCCCAGTTTTTACTACTTCCATTCCAGGGAATGCAGTGCTGGGTAATAGgtgagtgctacaaggtttttctcactttttggtggggcaactttgtagtt Alignment from Spaln_nt2Genome GTGACGGCAACTGGTACCGGGCTCTAGTCAAGGAGATCTTACCAAGTGGGAATGTTAAAGTCCACTTTGTGGATTACGGAAATGTTGAAGAAGTTACCACAGACCAACTCCAGGCGATATTACCACAGTTCTTACTACTTCCATTTCAGGGGATGCAGTGCTGGCTAGTAG aaatgaacataaaggacacatgggagagttcctgtcatgtctttttgcagGCGATGGCAACTGCTACCAGGCTTTAGTGAAGGAGATCCTGCCAAGTGGGAATGTCAGAGCACACTTTGTGGACTATGGCAATGTTGAAGAAGTTACCACAGATCAACTCCAGGCAATTTTACCCCAGTTTTTACTACTTCCATTCCAGGGAATGCAGTGCTGGGTAATAGgtgagtgctacaaggtttttctcactttttggtggggcaactttgtagtt Alignment from Pairagon GTGACGGCAACTGGTACCGGGCTCTAGTCAAGGAGATCTTACCAAGTGGGAATGTTAAAGTCCACTTTGTGGATTACGGAAATGTTGAAGAAGTTACCACAGACCAACTCCAGGCGATATTACCACAGTTCTTACTACTTCCATTTCAGGGGATGCAGTGCTGGCTAGTAG aaatgaacataaaggacacatgggagagttcctgtcatgtctttttgcagGCGATGGCAACTGCTACCAGGCTTTAGTGAAGGAGATCCTGCCAAGTGGGAATGTCAGAGCACACTTTGTGGACTATGGCAATGTTGAAGAAGTTACCACAGATCAACTCCAGGCAATTTTACCCCAGTTTTTACTACTTCCATTCCAGGGAATGCAGTGCTGGGTAATAGgtgagtgctacaaggtttttctcactttttggtggggcaactttgtagtt Alignment from Exonerate_protein2genome GTGACGGCAACTGGTACCGGGCTCTAGTCAAGGAGATCTTACCAAGTGGGAATGTTAAAGTCCACTTTGTGGATTACGGAAATGTTGAAGAAGTTACCACAGACCAACTCCAGGCGATATTACCACAGTTCTTACTACTTCCATTTCAGGGGATGCAGTGCTGGCTAGTAG aaatgaacataaaggacacatgggagagttcctgtcatgtctttttgcagGCGATGGCAACTGCTACCAGGCTTTAGTGAAGGAGATCCTGCCAAGTGGGAATGTCAGAGCACACTTTGTGGACTATGGCAATGTTGAAGAAGTTACCACAGATCAACTCCAGGCAATTTTACCCCAGTTTTTACTACTTCCATTCCAGGGAATGCAGTGCTGGGTAATAGgtgagtgctacaaggtttttctcactttttggtggggcaactttgtagtt Alignment from Exonerate_coding2genome GTGACGGCAACTGGTACCGGGCTCTAGTCAAGGAGATCTTACCAAGTGGGAATGTTAAAGTCCACTTTGTGGATTACGGAAATGTTGAAGAAGTTACCACAGACCAACTCCAGGCGATATTACCACAGTTCTTACTACTTCCATTTCAGGGGATGCAGTGCTGGCTAGTAG aaatgaacataaaggacacatgggagagttcctgtcatgtctttttgcagGCGATGGCAACTGCTACCAGGCTTTAGTGAAGGAGATCCTGCCAAGTGGGAATGTCAGAGCACACTTTGTGGACTATGGCAATGTTGAAGAAGTTACCACAGATCAACTCCAGGCAATTTTACCCCAGTTTTTACTACTTCCATTCCAGGGAATGCAGTGCTGGGTAATAGgtgagtgctacaaggtttttctcactttttggtggggcaactttgtagtt Alignment from GeneWise GTGACGGCAACTGGTACCGGGCTCTAGTCAAGGAGATCTTACCAAGTGGGAATGTTAAAGTCCACTTTGTGGATTACGGAAATGTTGAAGAAGTTACCACAGACCAACTCCAGGCGATATTACCACAGTTCTTACTACTTCCATTTCAGGGGATGCAGTGCTGGCTAGTAG aaatgaacataaaggacacatgggagagttcctgtcatgtctttttgcagGCGATGGCAACTGCTACCAGGCTTTAGTGAAGGAGATCCTGCCAAGTGGGAATGTCAGAGCACACTTTGTGGACTATGGCAATGTTGAAGAAGTTACCACAGATCAACTCCAGGCAATTTTACCCCAGTTTTTACTACTTCCATTCCAGGGAATGCAGTGCTGGGTAATAGgtgagtgctacaaggtttttctcactttttggtggggcaactttgtagtt #### Tdrd1_ID12220_21 --> 2 - 1 Original Alignment atGATGACTTCTGGTACCGGGCCATTGTTCTGGAAACGTCGGAATCTGATGTGAAAGTTCTCTACGCAGATTATGGAAACATCGAAACCCTGCCTCTTTCCAGAGTGCAGCCCATCCCAGCCAGCCACCTGGAGCTGCCCTTCCAGATCATTAGATGCTCACTAGAGg tcttttttgtagttgacagctatgcccactctctccatcctcactgccagatGATGACTTTTGGTATGAGGCCATAGTTCTGGAAATGTCTGAATCGGATGTAAAAATTCTCTACACAGATTATGGAACCATTGAGACCCTTCCTCTCTCCCGG---GAGCCCATATCAACCAGCCACCTTGAGCTACCCTTTCAGATTATCAGATGCTCATTAAAAggtaaagaattttcactttataaaatgacctctataatttgttgtttattt Alignment from CESAR atGATGACTTCTGGTACCGGGCCATTGTTCTGGAAACGTCGGAATCTGATGTGAAAGTTCTCTACGCAGATTATGGAAACATCGAAACCCTGCCTCTTTCCAGAGTGCAGCCCATCCCAGCCAGCCACCTGGAGCTGCCCTTCCAGATCATTAGATGCTCACTAGAGg tcttttttgtagttgacagctatgcccactctctccatcctcactgccagatGATGACTTTTGGTATGAGGCCATAGTTCTGGAAATGTCTGAATCGGATGTAAAAATTCTCTACACAGATTATGGAACCATTGAGACCCTTCCTCTCTCCCGG---GAGCCCATATCAACCAGCCACCTTGAGCTACCCTTTCAGATTATCAGATGCTCATTAAAAggtaaagaattttcactttataaaatgacctctataatttgttgtttattt Alignment from Spaln_aa2Genome ATGATGACTTCTGGTACCGGGCCATTGTTCTGGAAACGTCGGAATCTGATGTGAAAGTTCTCTACGCAGATTATGGAAACATCGAAACCCTGCCTCTTTCCAGAGTGCAGCCCATCCCAGCCAGCCACCTGGAGCTGCCCTTCCAGATCATTAGATGCTCACTAGAGG tcttttttgtagttgacagctatgcccactctctccatcctcactgccagATGATGACTTTTGGTATGAGGCCATAGTTCTGGAAATGTCTGAATCGGATGTAAAAATTCTCTACACAGATTATGGAACCATTGAGACCCTTCCTCTCTCCCGG---GAGCCCATATCAACCAGCCACCTTGAGCTACCCTTTCAGATTATCAGATGCTCATTAAAAGgtaaagaattttcactttataaaatgacctctataatttgttgtttattt Alignment from Spaln_nt2Genome ATGATGACTTCTGGTACCGGGCCATTGTTCTGGAAACGTCGGAATCTGATGTGAAAGTTCTCTACGCAGATTATGGAAACATCGAAACCCTGCCTCTTTCCAGAGTGCAGCCCATCCCAGCCAGCCACCTGGAGCTGCCCTTCCAGATCATTAGATGCTCACTAGAGG tcttttttgtagttgacagctatgcccactctctccatcctcactgccagATGATGACTTTTGGTATGAGGCCATAGTTCTGGAAATGTCTGAATCGGATGTAAAAATTCTCTACACAGATTATGGAACCATTGAGACCCTTCCTCTCTCCCG---GGAGCCCATATCAACCAGCCACCTTGAGCTACCCTTTCAGATTATCAGATGCTCATTAAAAGgtaaagaattttcactttataaaatgacctctataatttgttgtttattt Alignment from Pairagon ATGATGACTTCTGGTACCGGGCCATTGTTCTGGAAACGTCGGAATCTGATGTGAAAGTTCTCTACGCAGATTATGGAAACATCGAAACCCTGCCTCTTTCCAGAGTGCAGCCCATCCCAGCCAGCCACCTGGAGCTGCCCTTCCAGATCATTAGATGCTCACTAGAGG tcttttttgtagttgacagctatgcccactctctccatcctcactgccagATGATGACTTTTGGTATGAGGCCATAGTTCTGGAAATGTCTGAATCGGATGTAAAAATTCTCTACACAGATTATGGAACCATTGAGACCCTTCCTCTCTCCCG---GGAGCCCATATCAACCAGCCACCTTGAGCTACCCTTTCAGATTATCAGATGCTCATTAAAAGgtaaagaattttcactttataaaatgacctctataatttgttgtttattt Alignment from Exonerate_protein2genome ATGATGACTTCTGGTACCGGGCCATTGTTCTGGAAACGTCGGAATCTGATGTGAAAGTTCTCTACGCAGATTATGGAAACATCGAAACCCTGCCTCTTTCCAGAGTGCAGCCCATCCCAGCCAGCCACCTGGAGCTGCCCTTCCAGATCATTAGATGCTCACTAGAGG tcttttttgtagttgacagctatgcccactctctccatcctcactgccagATGATGACTTTTGGTATGAGGCCATAGTTCTGGAAATGTCTGAATCGGATGTAAAAATTCTCTACACAGATTATGGAACCATTGAGACCCTTCCTCTCTCCCGG---GAGCCCATATCAACCAGCCACCTTGAGCTACCCTTTCAGATTATCAGATGCTCATTAAAAGgtaaagaattttcactttataaaatgacctctataatttgttgtttattt Alignment from Exonerate_coding2genome ATGATGACTTCTGGTACCGGGCCATTGTTCTGGAAACGTCGGAATCTGATGTGAAAGTTCTCTACGCAGATTATGGAAACATCGAAACCCTGCCTCTTTCCAGAGTGCAGCCCATCCCAGCCAGCCACCTGGAGCTGCCCTTCCAGATCATTAGATGCTCACTAGAGG tcttttttgtagttgacagctatgcccactctctccatcctcactgccagATGATGACTTTTGGTATGAGGCCATAGTTCTGGAAATGTCTGAATCGGATGTAAAAATTCTCTACACAGATTATGGAACCATTGAGACCCTTCCTCTCTCCCGG---GAGCCCATATCAACCAGCCACCTTGAGCTACCCTTTCAGATTATCAGATGCTCATTAAAAGgtaaagaattttcactttataaaatgacctctataatttgttgtttattt Alignment from GeneWise ATGATGACTTCTGGTACCGGGCCATTGTTCTGGAAACGTCGGAATCTGATGTGAAAGTTCTCTACGCAGATTATGGAAACATCGAAACCCTGCCTCTTTCCAGAGTGCAGCCCATCCCAGCCAGCCACCTGGAGCTGCCCTTCCAGATCATTAGATGCTCACTAGAGG tcttttttgtagttgacagctatgcccactctctccatcctcactgccagATGATGACTTTTGGTATGAGGCCATAGTTCTGGAAATGTCTGAATCGGATGTAAAAATTCTCTACACAGATTATGGAACCATTGAGACCCTTCCTCTCTCCCGG---GAGCCCATATCAACCAGCCACCTTGAGCTACCCTTTCAGATTATCAGATGCTCATTAAAAGgtaaagaattttcactttataaaatgacctctataatttgttgtttattt #### Tectb_ID11559_3 --> 0 - 2 Original Alignment TACAAGCCCCCCATCTACCACTTCTACAGCCACATCGTGTCCAACGACAGCACAGTGATCGTGAAGAACCAGCCCGTCAACTACTCCTTCTCCTGCACCTACCACTCCACCTACTTGGTGAACCAGGCTGCTTTTGACCAGag gtgacgaggataaacatgaaacacaggactcactttgcctctctgcccagTATAAGCCTCCCATCTACCACTTCTACAGCCACATTGTGTCAAATGACACCACAGTTATTGTGAAGAACCAGCCAGTCAACTATTCCTTCTCTTGCACTTACCATTCAACCTACCTTGTGAATCAGGCTGCATTCGATCAGaagtaagtgctctaggaagatggccttgcgactctagaattttccaagtcaa Alignment from CESAR TACAAGCCCCCCATCTACCACTTCTACAGCCACATCGTGTCCAACGACAGCACAGTGATCGTGAAGAACCAGCCCGTCAACTACTCCTTCTCCTGCACCTACCACTCCACCTACTTGGTGAACCAGGCTGCTTTTGACCAGag gtgacgaggataaacatgaaacacaggactcactttgcctctctgcccagTATAAGCCTCCCATCTACCACTTCTACAGCCACATTGTGTCAAATGACACCACAGTTATTGTGAAGAACCAGCCAGTCAACTATTCCTTCTCTTGCACTTACCATTCAACCTACCTTGTGAATCAGGCTGCATTCGATCAGaagtaagtgctctaggaagatggccttgcgactctagaattttccaagtcaa Alignment from Spaln_aa2Genome TACAAGCCCCCCATCTACCACTTCTACAGCCACATCGTGTCCAACGACAGCACAGTGATCGTGAAGAACCAGCCCGTCAACTACTCCTTCTCCTGCACCTACCACTCCACCTACTTGGTGAACCAGGCTGCTTTTGACCAGAG gtgacgaggataaacatgaaacacaggactcactttgcctctctgcccagTATAAGCCTCCCATCTACCACTTCTACAGCCACATTGTGTCAAATGACACCACAGTTATTGTGAAGAACCAGCCAGTCAACTATTCCTTCTCTTGCACTTACCATTCAACCTACCTTGTGAATCAGGCTGCATTCGATCAGAAgtaagtgctctaggaagatggccttgcgactctagaattttccaagtcaa Alignment from Spaln_nt2Genome TACAAGCCCCCCATCTACCACTTCTACAGCCACATCGTGTCCAACGACAGCACAGTGATCGTGAAGAACCAGCCCGTCAACTACTCCTTCTCCTGCACCTACCACTCCACCTACTTGGTGAACCAGGCTGCTTTTGACCAGAG gtgacgaggataaacatgaaacacaggactcactttgcctctctgcccagTATAAGCCTCCCATCTACCACTTCTACAGCCACATTGTGTCAAATGACACCACAGTTATTGTGAAGAACCAGCCAGTCAACTATTCCTTCTCTTGCACTTACCATTCAACCTACCTTGTGAATCAGGCTGCATTCGATCAGAAgtaagtgctctaggaagatggccttgcgactctagaattttccaagtcaa Alignment from Pairagon TACAAGCCCCCCATCTACCACTTCTACAGCCACATCGTGTCCAACGACAGCACAGTGATCGTGAAGAACCAGCCCGTCAACTACTCCTTCTCCTGCACCTACCACTCCACCTACTTGGTGAACCAGGCTGCTTTTGACCAGAG gtgacgaggataaacatgaaacacaggactcactttgcctctctgcccagTATAAGCCTCCCATCTACCACTTCTACAGCCACATTGTGTCAAATGACACCACAGTTATTGTGAAGAACCAGCCAGTCAACTATTCCTTCTCTTGCACTTACCATTCAACCTACCTTGTGAATCAGGCTGCATTCGATCAGAAgtaagtgctctaggaagatggccttgcgactctagaattttccaagtcaa Alignment from Exonerate_protein2genome TACAAGCCCCCCATCTACCACTTCTACAGCCACATCGTGTCCAACGACAGCACAGTGATCGTGAAGAACCAGCCCGTCAACTACTCCTTCTCCTGCACCTACCACTCCACCTACTTGGTGAACCAGGCTGCTTTTGACCAGAG gtgacgaggataaacatgaaacacaggactcactttgcctctctgcccagTATAAGCCTCCCATCTACCACTTCTACAGCCACATTGTGTCAAATGACACCACAGTTATTGTGAAGAACCAGCCAGTCAACTATTCCTTCTCTTGCACTTACCATTCAACCTACCTTGTGAATCAGGCTGCATTCGATCAGAAgtaagtgctctaggaagatggccttgcgactctagaattttccaagtcaa Alignment from Exonerate_coding2genome TACAAGCCCCCCATCTACCACTTCTACAGCCACATCGTGTCCAACGACAGCACAGTGATCGTGAAGAACCAGCCCGTCAACTACTCCTTCTCCTGCACCTACCACTCCACCTACTTGGTGAACCAGGCTGCTTTTGACCAGAG gtgacgaggataaacatgaaacacaggactcactttgcctctctgcccagTATAAGCCTCCCATCTACCACTTCTACAGCCACATTGTGTCAAATGACACCACAGTTATTGTGAAGAACCAGCCAGTCAACTATTCCTTCTCTTGCACTTACCATTCAACCTACCTTGTGAATCAGGCTGCATTCGATCAGAAgtaagtgctctaggaagatggccttgcgactctagaattttccaagtcaa Alignment from GeneWise TACAAGCCCCCCATCTACCACTTCTACAGCCACATCGTGTCCAACGACAGCACAGTGATCGTGAAGAACCAGCCCGTCAACTACTCCTTCTCCTGCACCTACCACTCCACCTACTTGGTGAACCAGGCTGCTTTTGACCAGAG gtgacgaggataaacatgaaacacaggactcactttgcctctctgcccagTATAAGCCTCCCATCTACCACTTCTACAGCCACATTGTGTCAAATGACACCACAGTTATTGTGAAGAACCAGCCAGTCAACTATTCCTTCTCTTGCACTTACCATTCAACCTACCTTGTGAATCAGGCTGCATTCGATCAGAAgtaagtgctctaggaagatggccttgcgactctagaattttccaagtcaa #### Tectb_ID11562_5 --> 0 - 2 Original Alignment AATGCCAAGTTTTCCACCAAAAAAGAAGCTCCCTTCGTTCTGGAAACGTCCGAAATCGGCTCAGATCTGTTTGCGGGAGTAGAAGCCAAAGGCCTAAGCGTTcg aatgtggaatgttacaaacatgtctctataattttctcttctttttttagAACGCCAAGTTCTCCACTAAGAAAGAAGCTCCCTTTGTACTGGAAACAGCAGAAATTGGCTCAGATTTATTTGCAGGGGTAGAGGCTAAGGGCCTTAGCAGCcggtaccaactgtatgagtacctttagggcatatgttagatatcaccattgt Alignment from CESAR AATGCCAAGTTTTCCACCAAAAAAGAAGCTCCCTTCGTTCTGGAAACGTCCGAAATCGGCTCAGATCTGTTTGCGGGAGTAGAAGCCAAAGGCCTAAGCGTTcg aatgtggaatgttacaaacatgtctctataattttctcttctttttttagAACGCCAAGTTCTCCACTAAGAAAGAAGCTCCCTTTGTACTGGAAACAGCAGAAATTGGCTCAGATTTATTTGCAGGGGTAGAGGCTAAGGGCCTTAGCAGCcggtaccaactgtatgagtacctttagggcatatgttagatatcaccattgt Alignment from Spaln_aa2Genome AATGCCAAGTTTTCCACCAAAAAAGAAGCTCCCTTCGTTCTGGAAACGTCCGAAATCGGCTCAGATCTGTTTGCGGGAGTAGAAGCCAAAGGCCTAAGCGTTCG aatgtggaatgttacaaacatgtctctataattttctcttctttttttagAACGCCAAGTTCTCCACTAAGAAAGAAGCTCCCTTTGTACTGGAAACAGCAGAAATTGGCTCAGATTTATTTGCAGGGGTAGAGGCTAAGGGCCTTAGCAGCCGgtaccaactgtatgagtacctttagggcatatgttagatatcaccattgt Alignment from Spaln_nt2Genome AATGCCAAGTTTTCCACCAAAAAAGAAGCTCCCTTCGTTCTGGAAACGTCCGAAATCGGCTCAGATCTGTTTGCGGGAGTAGAAGCCAAAGGCCTAAGCGTTCG aatgtggaatgttacaaacatgtctctataattttctcttctttttttagAACGCCAAGTTCTCCACTAAGAAAGAAGCTCCCTTTGTACTGGAAACAGCAGAAATTGGCTCAGATTTATTTGCAGGGGTAGAGGCTAAGGGCCTTAGCAGCCGgtaccaactgtatgagtacctttagggcatatgttagatatcaccattgt Alignment from Pairagon AATGCCAAGTTTTCCACCAAAAAAGAAGCTCCCTTCGTTCTGGAAACGTCCGAAATCGGCTCAGATCTGTTTGCGGGAGTAGAAGCCAAAGGCCTAAGCGTTCG aatgtggaatgttacaaacatgtctctataattttctcttctttttttagAACGCCAAGTTCTCCACTAAGAAAGAAGCTCCCTTTGTACTGGAAACAGCAGAAATTGGCTCAGATTTATTTGCAGGGGTAGAGGCTAAGGGCCTTAGCAGCCGgtaccaactgtatgagtacctttagggcatatgttagatatcaccattgt Alignment from Exonerate_protein2genome AATGCCAAGTTTTCCACCAAAAAAGAAGCTCCCTTCGTTCTGGAAACGTCCGAAATCGGCTCAGATCTGTTTGCGGGAGTAGAAGCCAAAGGCCTAAGCGTTCG aatgtggaatgttacaaacatgtctctataattttctcttctttttttagAACGCCAAGTTCTCCACTAAGAAAGAAGCTCCCTTTGTACTGGAAACAGCAGAAATTGGCTCAGATTTATTTGCAGGGGTAGAGGCTAAGGGCCTTAGCAGCCGgtaccaactgtatgagtacctttagggcatatgttagatatcaccattgt Alignment from Exonerate_coding2genome AATGCCAAGTTTTCCACCAAAAAAGAAGCTCCCTTCGTTCTGGAAACGTCCGAAATCGGCTCAGATCTGTTTGCGGGAGTAGAAGCCAAAGGCCTAAGCGTTCG aatgtggaatgttacaaacatgtctctataattttctcttctttttttagAACGCCAAGTTCTCCACTAAGAAAGAAGCTCCCTTTGTACTGGAAACAGCAGAAATTGGCTCAGATTTATTTGCAGGGGTAGAGGCTAAGGGCCTTAGCAGCCGgtaccaactgtatgagtacctttagggcatatgttagatatcaccattgt Alignment from GeneWise AATGCCAAGTTTTCCACCAAAAAAGAAGCTCCCTTCGTTCTGGAAACGTCCGAAATCGGCTCAGATCTGTTTGCGGGAGTAGAAGCCAAAGGCCTAAGCGTTCG aatgtggaatgttacaaacatgtctctataattttctcttctttttttagAACGCCAAGTTCTCCACTAAGAAAGAAGCTCCCTTTGTACTGGAAACAGCAGAAATTGGCTCAGATTTATTTGCAGGGGTAGAGGCTAAGGGCCTTAGCAGCCGgtaccaactgtatgagtacctttagggcatatgttagatatcaccattgt #### Tjp2_ID5265_21 --> 0 - 0 Original Alignment GCAAGAAGCCAGAACAGAGAAGACTCCTTCGACTACTCCAAGTCAAACCTCCCCGCCACAGCCGGCAGTGAAATCCCGGGGGGATCCACCAAAGGCTATCCTCCCCCTATTGCAGCGAAGCCTGCCTTTGGGCGGCCCATCCTGAAGCCTTCCACTCCAGTCCCTATGCCTGAGAGCGAGGAGGTTGGAGAGAGCACCGAGGAGCAGGAAGATGCTCCCAGATCAGTCCTGGGCAGAGTGAAAATATTCGAGAAGATGGACCACAAGGCAAAATTACAGAGGATGCAGGAGCTCCAGGAGGCCCAGAATGCGAGG attactaatagccaggaaaagcaccagactgatttgtttcctccttttagACAAGAAGCCATAACAGAGAAGACTCCTTTGACTACTCCAAGTCAAACCTCCCTGCTATATCTGGCAGTGAAATCCCAGGACGGTCCACCAAAGGATATCCACCCCCAATGGCTGCAAAGCCTGCATTTGGGCGCCCTATATTGAAGCCCTCCACCCCAGTGCCTATGCCTAGGAGTGAGGAGGTTGGAGAGAGTACTGAGGAACAAGAT---GCTCCCAGATCAGTCCTGGGTAGGGTGGAAATATTTGAGAAGATGGACCACAAAATGAAGTTACAGAGGATGCAGGAACTGCAGGAGGCACAGAATGCAAGGgtgaggattgttcctagtcacctgggtaaggattactgagaaggctgttt Alignment from CESAR GCAAGAAGCCAGAACAGAGAAGACTCCTTCGACTACTCCAAGTCAAACCTCCCCGCCACAGCCGGCAGTGAAATCCCGGGGGGATCCACCAAAGGCTATCCTCCCCCTATTGCAGCGAAGCCTGCCTTTGGGCGGCCCATCCTGAAGCCTTCCACTCCAGTCCCTATGCCTGAGAGCGAGGAGGTTGGAGAGAGCACCGAGGAGCAGGAAGATGCTCCCAGATCAGTCCTGGGCAGAGTGAAAATATTCGAGAAGATGGACCACAAGGCAAAATTACAGAGGATGCAGGAGCTCCAGGAGGCCCAGAATGCGAGG attactaatagccaggaaaagcaccagactgatttgtttcctccttttagACAAGAAGCCATAACAGAGAAGACTCCTTTGACTACTCCAAGTCAAACCTCCCTGCTATATCTGGCAGTGAAATCCCAGGACGGTCCACCAAAGGATATCCACCCCCAATGGCTGCAAAGCCTGCATTTGGGCGCCCTATATTGAAGCCCTCCACCCCAGTGCCTATGCCTAGGAGTGAGGAGGTTGGAGAGAGTACTGAGGAACAA---GATGCTCCCAGATCAGTCCTGGGTAGGGTGGAAATATTTGAGAAGATGGACCACAAAATGAAGTTACAGAGGATGCAGGAACTGCAGGAGGCACAGAATGCAAGGgtgaggattgttcctagtcacctgggtaaggattactgagaaggctgttt Alignment from Spaln_aa2Genome GCAAGAAGCCAGAACAGAGAAGACTCCTTCGACTACTCCAAGTCAAACCTCCCCGCCACAGCCGGCAGTGAAATCCCGGGGGGATCCACCAAAGGCTATCCTCCCCCTATTGCAGCGAAGCCTGCCTTTGGGCGGCCCATCCTGAAGCCTTCCACTCCAGTCCCTATGCCTGAGAGCGAGGAGGTTGGAGAGAGCACCGAGGAGCAGGAAGATGCTCCCAGATCAGTCCTGGGCAGAGTGAAAATATTCGAGAAGATGGACCACAAGGCAAAATTACAGAGGATGCAGGAGCTCCAGGAGGCCCAGAATGCGAGG attactaatagccaggaaaagcaccagactgatttgtttcctccttttagACAAGAAGCCATAACAGAGAAGACTCCTTTGACTACTCCAAGTCAAACCTCCCTGCTATATCTGGCAGTGAAATCCCAGGACGGTCCACCAAAGGATATCCACCCCCAATGGCTGCAAAGCCTGCATTTGGGCGCCCTATATTGAAGCCCTCCACCCCAGTGCCTATGCCTAGGAGTGAGGAGGTTGGAGAGAGTACTGAGGAACAA---GATGCTCCCAGATCAGTCCTGGGTAGGGTGGAAATATTTGAGAAGATGGACCACAAAATGAAGTTACAGAGGATGCAGGAACTGCAGGAGGCACAGAATGCAAGGgtgaggattgttcctagtcacctgggtaaggattactgagaaggctgttt Alignment from Spaln_nt2Genome GCAAGAAGCCAGAACAGAGAAGACTCCTTCGACTACTCCAAGTCAAACCTCCCCGCCACAGCCGGCAGTGAAATCCCGGGGGGATCCACCAAAGGCTATCCTCCCCCTATTGCAGCGAAGCCTGCCTTTGGGCGGCCCATCCTGAAGCCTTCCACTCCAGTCCCTATGCCTGAGAGCGAGGAGGTTGGAGAGAGCACCGAGGAGCAGGAAGATGCTCCCAGATCAGTCCTGGGCAGAGTGAAAATATTCGAGAAGATGGACCACAAGGCAAAATTACAGAGGATGCAGGAGCTCCAGGAGGCCCAGAATGCGAGG attactaatagccaggaaaagcaccagactgatttgtttcctccttttagACAAGAAGCCATAACAGAGAAGACTCCTTTGACTACTCCAAGTCAAACCTCCCTGCTATATCTGGCAGTGAAATCCCAGGACGGTCCACCAAAGGATATCCACCCCCAATGGCTGCAAAGCCTGCATTTGGGCGCCCTATATTGAAGCCCTCCACCCCAGTGCCTATGCCTAGGAGTGAGGAGGTTGGAGAGAGTACTGAGGAAC---AAGATGCTCCCAGATCAGTCCTGGGTAGGGTGGAAATATTTGAGAAGATGGACCACAAAATGAAGTTACAGAGGATGCAGGAACTGCAGGAGGCACAGAATGCAAGGgtgaggattgttcctagtcacctgggtaaggattactgagaaggctgttt Alignment from Pairagon GCAAGAAGCCAGAACAGAGAAGACTCCTTCGACTACTCCAAGTCAAACCTCCCCGCCACAGCCGGCAGTGAAATCCCGGGGGGATCCACCAAAGGCTATCCTCCCCCTATTGCAGCGAAGCCTGCCTTTGGGCGGCCCATCCTGAAGCCTTCCACTCCAGTCCCTATGCCTGAGAGCGAGGAGGTTGGAGAGAGCACCGAGGAGCAGGAAGATGCTCCCAGATCAGTCCTGGGCAGAGTGAAAATATTCGAGAAGATGGACCACAAGGCAAAATTACAGAGGATGCAGGAGCTCCAGGAGGCCCAGAATGCGAGG attactaatagccaggaaaagcaccagactgatttgtttcctccttttagACAAGAAGCCATAACAGAGAAGACTCCTTTGACTACTCCAAGTCAAACCTCCCTGCTATATCTGGCAGTGAAATCCCAGGACGGTCCACCAAAGGATATCCACCCCCAATGGCTGCAAAGCCTGCATTTGGGCGCCCTATATTGAAGCCCTCCACCCCAGTGCCTATGCCTAGGAGTGAGGAGGTTGGAGAGAGTACTGAGGAAC---AAGATGCTCCCAGATCAGTCCTGGGTAGGGTGGAAATATTTGAGAAGATGGACCACAAAATGAAGTTACAGAGGATGCAGGAACTGCAGGAGGCACAGAATGCAAGGgtgaggattgttcctagtcacctgggtaaggattactgagaaggctgttt Alignment from Exonerate_protein2genome GCAAGAAGCCAGAACAGAGAAGACTCCTTCGACTACTCCAAGTCAAACCTCCCCGCCACAGCCGGCAGTGAAATCCCGGGGGGATCCACCAAAGGCTATCCTCCCCCTATTGCAGCGAAGCCTGCCTTTGGGCGGCCCATCCTGAAGCCTTCCACTCCAGTCCCTATGCCTGAGAGCGAGGAGGTTGGAGAGAGCACCGAGGAGCAGGAAGATGCTCCCAGATCAGTCCTGGGCAGAGTGAAAATATTCGAGAAGATGGACCACAAGGCAAAATTACAGAGGATGCAGGAGCTCCAGGAGGCCCAGAATGCGAGG attactaatagccaggaaaagcaccagactgatttgtttcctccttttagACAAGAAGCCATAACAGAGAAGACTCCTTTGACTACTCCAAGTCAAACCTCCCTGCTATATCTGGCAGTGAAATCCCAGGACGGTCCACCAAAGGATATCCACCCCCAATGGCTGCAAAGCCTGCATTTGGGCGCCCTATATTGAAGCCCTCCACCCCAGTGCCTATGCCTAGGAGTGAGGAGGTTGGAGAGAGTACTGAGGAACAA---GATGCTCCCAGATCAGTCCTGGGTAGGGTGGAAATATTTGAGAAGATGGACCACAAAATGAAGTTACAGAGGATGCAGGAACTGCAGGAGGCACAGAATGCAAGGgtgaggattgttcctagtcacctgggtaaggattactgagaaggctgttt Alignment from Exonerate_coding2genome GCAAGAAGCCAGAACAGAGAAGACTCCTTCGACTACTCCAAGTCAAACCTCCCCGCCACAGCCGGCAGTGAAATCCCGGGGGGATCCACCAAAGGCTATCCTCCCCCTATTGCAGCGAAGCCTGCCTTTGGGCGGCCCATCCTGAAGCCTTCCACTCCAGTCCCTATGCCTGAGAGCGAGGAGGTTGGAGAGAGCACCGAGGAGCAGGAAGATGCTCCCAGATCAGTCCTGGGCAGAGTGAAAATATTCGAGAAGATGGACCACAAGGCAAAATTACAGAGGATGCAGGAGCTCCAGGAGGCCCAGAATGCGAGG attactaatagccaggaaaagcaccagactgatttgtttcctccttttagACAAGAAGCCATAACAGAGAAGACTCCTTTGACTACTCCAAGTCAAACCTCCCTGCTATATCTGGCAGTGAAATCCCAGGACGGTCCACCAAAGGATATCCACCCCCAATGGCTGCAAAGCCTGCATTTGGGCGCCCTATATTGAAGCCCTCCACCCCAGTGCCTATGCCTAGGAGTGAGGAGGTTGGAGAGAGTACTGAGGAACAA---GATGCTCCCAGATCAGTCCTGGGTAGGGTGGAAATATTTGAGAAGATGGACCACAAAATGAAGTTACAGAGGATGCAGGAACTGCAGGAGGCACAGAATGCAAGGgtgaggattgttcctagtcacctgggtaaggattactgagaaggctgttt Alignment from GeneWise GCAAGAAGCCAGAACAGAGAAGACTCCTTCGACTACTCCAAGTCAAACCTCCCCGCCACAGCCGGCAGTGAAATCCCGGGGGGATCCACCAAAGGCTATCCTCCCCCTATTGCAGCGAAGCCTGCCTTTGGGCGGCCCATCCTGAAGCCTTCCACTCCAGTCCCTATGCCTGAGAGCGAGGAGGTTGGAGAGAGCACCGAGGAGCAGGAAGATGCTCCCAGATCAGTCCTGGGCAGAGTGAAAATATTCGAGAAGATGGACCACAAGGCAAAATTACAGAGGATGCAGGAGCTCCAGGAGGCCCAGAATGCGAGG attactaatagccaggaaaagcaccagactgatttgtttcctccttttagACAAGAAGCCATAACAGAGAAGACTCCTTTGACTACTCCAAGTCAAACCTCCCTGCTATATCTGGCAGTGAAATCCCAGGACGGTCCACCAAAGGATATCCACCCCCAATGGCTGCAAAGCCTGCATTTGGGCGCCCTATATTGAAGCCCTCCACCCCAGTGCCTATGCCTAGGAGTGAGGAGGTTGGAGAGAGTACTGAGGAACAA---GATGCTCCCAGATCAGTCCTGGGTAGGGTGGAAATATTTGAGAAGATGGACCACAAAATGAAGTTACAGAGGATGCAGGAACTGCAGGAGGCACAGAATGCAAGGgtgaggattgttcctagtcacctgggtaaggattactgagaaggctgttt #### Tjp2_ID5266_20 --> 0 - 0 Original Alignment AACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTCAAGCCAGAGCCGCCCAAG ctcaactagagcatccatggttggtagcaaaatactctgttcccttacagAACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTTAATCCAGAGCCGCCCAAAgtaggggctagagaaacctagaagatgaagaagcagtgctttggggctca Alignment from CESAR AACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTCAAGCCAGAGCCGCCCAAG ctcaactagagcatccatggttggtagcaaaatactctgttcccttacagAACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTTAATCCAGAGCCGCCCAAAgtaggggctagagaaacctagaagatgaagaagcagtgctttggggctca Alignment from Spaln_aa2Genome AACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTCAAGCCAGAGCCGCCCAAG ctcaactagagcatccatggttggtagcaaaatactctgttcccttacagAACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTTAATCCAGAGCCGCCCAAAgtaggggctagagaaacctagaagatgaagaagcagtgctttggggctca Alignment from Spaln_nt2Genome AACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTCAAGCCAGAGCCGCCCAAG ctcaactagagcatccatggttggtagcaaaatactctgttcccttacagAACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTTAATCCAGAGCCGCCCAAAgtaggggctagagaaacctagaagatgaagaagcagtgctttggggctca Alignment from Pairagon AACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTCAAGCCAGAGCCGCCCAAG ctcaactagagcatccatggttggtagcaaaatactctgttcccttacagAACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTTAATCCAGAGCCGCCCAAAgtaggggctagagaaacctagaagatgaagaagcagtgctttggggctca Alignment from Exonerate_protein2genome AACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTCAAGCCAGAGCCGCCCAAG ctcaactagagcatccatggttggtagcaaaatactctgttcccttacagAACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTTAATCCAGAGCCGCCCAAAgtaggggctagagaaacctagaagatgaagaagcagtgctttggggctca Alignment from Exonerate_coding2genome AACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTCAAGCCAGAGCCGCCCAAG ctcaactagagcatccatggttggtagcaaaatactctgttcccttacagAACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTTAATCCAGAGCCGCCCAAAgtaggggctagagaaacctagaagatgaagaagcagtgctttggggctca Alignment from GeneWise AACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTCAAGCCAGAGCCGCCCAAG ctcaactagagcatccatggttggtagcaaaatactctgttcccttacagAACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTTAATCCAGAGCCGCCCAAAgtaggggctagagaaacctagaagatgaagaagcagtgctttggggctca #### Tjp2_ID5267_19 --> 0 - 0 Original Alignment ATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTACTTAACCGCCATGGGCGCGGACTATCTGAGTTGTGACAGCCGTCTCATCAGTGACTTTGAAGACACCGACGGCGAGGGAGGCGCCTACACTGACAATGAGCTAGAGGAGCCGGCGGAGGAGCCGCTGGTGTCTTCCATCACCCGCTCCTCGGAGCCGGTGCAGCACGAGGAG gatttgattgcggaacccaattgactcttcattatttttctgataaatagATGGAAGGGATGGAAGATGATGCTGAAGACCGCATGTCCTATTTGACTGCCATGGGAGCAGACTATCTGAGCTGTGACAGTCGTCTCATCAGTGACTTCGAGGACACTGATGGTGAGGGAGGTGCCTACACTGACAATGAGCTAGAGGAGCCAGCTGAGGAGCCGCTTGTGTCTTCCATCACCCGCTCCTCAGAGCCAGTGCAATATGAGGAGgtaagcttagcatatgtgggaagtatgcaccaagagctagaggctaggct Alignment from CESAR ATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTACTTAACCGCCATGGGCGCGGACTATCTGAGTTGTGACAGCCGTCTCATCAGTGACTTTGAAGACACCGACGGCGAGGGAGGCGCCTACACTGACAATGAGCTAGAGGAGCCGGCGGAGGAGCCGCTGGTGTCTTCCATCACCCGCTCCTCGGAGCCGGTGCAGCACGAGGAG gatttgattgcggaacccaattgactcttcattatttttctgataaatagATGGAAGGGATGGAAGATGATGCTGAAGACCGCATGTCCTATTTGACTGCCATGGGAGCAGACTATCTGAGCTGTGACAGTCGTCTCATCAGTGACTTCGAGGACACTGATGGTGAGGGAGGTGCCTACACTGACAATGAGCTAGAGGAGCCAGCTGAGGAGCCGCTTGTGTCTTCCATCACCCGCTCCTCAGAGCCAGTGCAATATGAGGAGgtaagcttagcatatgtgggaagtatgcaccaagagctagaggctaggct Alignment from Spaln_aa2Genome ATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTACTTAACCGCCATGGGCGCGGACTATCTGAGTTGTGACAGCCGTCTCATCAGTGACTTTGAAGACACCGACGGCGAGGGAGGCGCCTACACTGACAATGAGCTAGAGGAGCCGGCGGAGGAGCCGCTGGTGTCTTCCATCACCCGCTCCTCGGAGCCGGTGCAGCACGAGGAG gatttgattgcggaacccaattgactcttcattatttttctgataaatagATGGAAGGGATGGAAGATGATGCTGAAGACCGCATGTCCTATTTGACTGCCATGGGAGCAGACTATCTGAGCTGTGACAGTCGTCTCATCAGTGACTTCGAGGACACTGATGGTGAGGGAGGTGCCTACACTGACAATGAGCTAGAGGAGCCAGCTGAGGAGCCGCTTGTGTCTTCCATCACCCGCTCCTCAGAGCCAGTGCAATATGAGGAGgtaagcttagcatatgtgggaagtatgcaccaagagctagaggctaggct Alignment from Spaln_nt2Genome ATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTACTTAACCGCCATGGGCGCGGACTATCTGAGTTGTGACAGCCGTCTCATCAGTGACTTTGAAGACACCGACGGCGAGGGAGGCGCCTACACTGACAATGAGCTAGAGGAGCCGGCGGAGGAGCCGCTGGTGTCTTCCATCACCCGCTCCTCGGAGCCGGTGCAGCACGAGGAG gatttgattgcggaacccaattgactcttcattatttttctgataaatagATGGAAGGGATGGAAGATGATGCTGAAGACCGCATGTCCTATTTGACTGCCATGGGAGCAGACTATCTGAGCTGTGACAGTCGTCTCATCAGTGACTTCGAGGACACTGATGGTGAGGGAGGTGCCTACACTGACAATGAGCTAGAGGAGCCAGCTGAGGAGCCGCTTGTGTCTTCCATCACCCGCTCCTCAGAGCCAGTGCAATATGAGGAGgtaagcttagcatatgtgggaagtatgcaccaagagctagaggctaggct Alignment from Pairagon ATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTACTTAACCGCCATGGGCGCGGACTATCTGAGTTGTGACAGCCGTCTCATCAGTGACTTTGAAGACACCGACGGCGAGGGAGGCGCCTACACTGACAATGAGCTAGAGGAGCCGGCGGAGGAGCCGCTGGTGTCTTCCATCACCCGCTCCTCGGAGCCGGTGCAGCACGAGGAG gatttgattgcggaacccaattgactcttcattatttttctgataaatagATGGAAGGGATGGAAGATGATGCTGAAGACCGCATGTCCTATTTGACTGCCATGGGAGCAGACTATCTGAGCTGTGACAGTCGTCTCATCAGTGACTTCGAGGACACTGATGGTGAGGGAGGTGCCTACACTGACAATGAGCTAGAGGAGCCAGCTGAGGAGCCGCTTGTGTCTTCCATCACCCGCTCCTCAGAGCCAGTGCAATATGAGGAGgtaagcttagcatatgtgggaagtatgcaccaagagctagaggctaggct Alignment from Exonerate_protein2genome ATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTACTTAACCGCCATGGGCGCGGACTATCTGAGTTGTGACAGCCGTCTCATCAGTGACTTTGAAGACACCGACGGCGAGGGAGGCGCCTACACTGACAATGAGCTAGAGGAGCCGGCGGAGGAGCCGCTGGTGTCTTCCATCACCCGCTCCTCGGAGCCGGTGCAGCACGAGGAG gatttgattgcggaacccaattgactcttcattatttttctgataaatagATGGAAGGGATGGAAGATGATGCTGAAGACCGCATGTCCTATTTGACTGCCATGGGAGCAGACTATCTGAGCTGTGACAGTCGTCTCATCAGTGACTTCGAGGACACTGATGGTGAGGGAGGTGCCTACACTGACAATGAGCTAGAGGAGCCAGCTGAGGAGCCGCTTGTGTCTTCCATCACCCGCTCCTCAGAGCCAGTGCAATATGAGGAGgtaagcttagcatatgtgggaagtatgcaccaagagctagaggctaggct Alignment from Exonerate_coding2genome ATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTACTTAACCGCCATGGGCGCGGACTATCTGAGTTGTGACAGCCGTCTCATCAGTGACTTTGAAGACACCGACGGCGAGGGAGGCGCCTACACTGACAATGAGCTAGAGGAGCCGGCGGAGGAGCCGCTGGTGTCTTCCATCACCCGCTCCTCGGAGCCGGTGCAGCACGAGGAG gatttgattgcggaacccaattgactcttcattatttttctgataaatagATGGAAGGGATGGAAGATGATGCTGAAGACCGCATGTCCTATTTGACTGCCATGGGAGCAGACTATCTGAGCTGTGACAGTCGTCTCATCAGTGACTTCGAGGACACTGATGGTGAGGGAGGTGCCTACACTGACAATGAGCTAGAGGAGCCAGCTGAGGAGCCGCTTGTGTCTTCCATCACCCGCTCCTCAGAGCCAGTGCAATATGAGGAGgtaagcttagcatatgtgggaagtatgcaccaagagctagaggctaggct Alignment from GeneWise ATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTACTTAACCGCCATGGGCGCGGACTATCTGAGTTGTGACAGCCGTCTCATCAGTGACTTTGAAGACACCGACGGCGAGGGAGGCGCCTACACTGACAATGAGCTAGAGGAGCCGGCGGAGGAGCCGCTGGTGTCTTCCATCACCCGCTCCTCGGAGCCGGTGCAGCACGAGGAG gatttgattgcggaacccaattgactcttcattatttttctgataaatagATGGAAGGGATGGAAGATGATGCTGAAGACCGCATGTCCTATTTGACTGCCATGGGAGCAGACTATCTGAGCTGTGACAGTCGTCTCATCAGTGACTTCGAGGACACTGATGGTGAGGGAGGTGCCTACACTGACAATGAGCTAGAGGAGCCAGCTGAGGAGCCGCTTGTGTCTTCCATCACCCGCTCCTCAGAGCCAGTGCAATATGAGGAGgtaagcttagcatatgtgggaagtatgcaccaagagctagaggctaggct #### Tjp2_ID5280_7 --> 0 - 1 Original Alignment ATCAACGGCACTGTTACTGAGAACATGTCTCTAACGGATGCTCGGAAGTTAATAGAAAAGTCTCGAGGAAAACTGCAGCTTGTGGTGTTGAGAGACAGCAAGCAGACCCTCATCAACATCCCAGCCCTAAACGACAGCGACTCTGAAGTGGAGg gcctaccttatagtggccctgcacatcattgtttccttcttctccctaagATTAATGGCACTGCTACAAAGAATATGTCTCTCGCTGATGCTCAGAAGTTGGTAGAAAAATCCCGAGGAAAGCTGCAGCTTGTGGTGTTGAGAGACACTAAGCAGACCCTCATCAACATCCCAGCCCTGAATGACAGTGACTCAGAAGTTGAGggtaagtagtctacgtgctgggctgaacatctaaaaatccaaccaactcgt Alignment from CESAR ATCAACGGCACTGTTACTGAGAACATGTCTCTAACGGATGCTCGGAAGTTAATAGAAAAGTCTCGAGGAAAACTGCAGCTTGTGGTGTTGAGAGACAGCAAGCAGACCCTCATCAACATCCCAGCCCTAAACGACAGCGACTCTGAAGTGGAGg gcctaccttatagtggccctgcacatcattgtttccttcttctccctaagATTAATGGCACTGCTACAAAGAATATGTCTCTCGCTGATGCTCAGAAGTTGGTAGAAAAATCCCGAGGAAAGCTGCAGCTTGTGGTGTTGAGAGACACTAAGCAGACCCTCATCAACATCCCAGCCCTGAATGACAGTGACTCAGAAGTTGAGggtaagtagtctacgtgctgggctgaacatctaaaaatccaaccaactcgt Alignment from Spaln_aa2Genome ATCAACGGCACTGTTACTGAGAACATGTCTCTAACGGATGCTCGGAAGTTAATAGAAAAGTCTCGAGGAAAACTGCAGCTTGTGGTGTTGAGAGACAGCAAGCAGACCCTCATCAACATCCCAGCCCTAAACGACAGCGACTCTGAAGTGGAGG gcctaccttatagtggccctgcacatcattgtttccttcttctccctaagATTAATGGCACTGCTACAAAGAATATGTCTCTCGCTGATGCTCAGAAGTTGGTAGAAAAATCCCGAGGAAAGCTGCAGCTTGTGGTGTTGAGAGACACTAAGCAGACCCTCATCAACATCCCAGCCCTGAATGACAGTGACTCAGAAGTTGAGGgtaagtagtctacgtgctgggctgaacatctaaaaatccaaccaactcgt Alignment from Spaln_nt2Genome ATCAACGGCACTGTTACTGAGAACATGTCTCTAACGGATGCTCGGAAGTTAATAGAAAAGTCTCGAGGAAAACTGCAGCTTGTGGTGTTGAGAGACAGCAAGCAGACCCTCATCAACATCCCAGCCCTAAACGACAGCGACTCTGAAGTGGAGG gcctaccttatagtggccctgcacatcattgtttccttcttctccctaagATTAATGGCACTGCTACAAAGAATATGTCTCTCGCTGATGCTCAGAAGTTGGTAGAAAAATCCCGAGGAAAGCTGCAGCTTGTGGTGTTGAGAGACACTAAGCAGACCCTCATCAACATCCCAGCCCTGAATGACAGTGACTCAGAAGTTGAGGgtaagtagtctacgtgctgggctgaacatctaaaaatccaaccaactcgt Alignment from Pairagon ATCAACGGCACTGTTACTGAGAACATGTCTCTAACGGATGCTCGGAAGTTAATAGAAAAGTCTCGAGGAAAACTGCAGCTTGTGGTGTTGAGAGACAGCAAGCAGACCCTCATCAACATCCCAGCCCTAAACGACAGCGACTCTGAAGTGGAGG gcctaccttatagtggccctgcacatcattgtttccttcttctccctaagATTAATGGCACTGCTACAAAGAATATGTCTCTCGCTGATGCTCAGAAGTTGGTAGAAAAATCCCGAGGAAAGCTGCAGCTTGTGGTGTTGAGAGACACTAAGCAGACCCTCATCAACATCCCAGCCCTGAATGACAGTGACTCAGAAGTTGAGGgtaagtagtctacgtgctgggctgaacatctaaaaatccaaccaactcgt Alignment from Exonerate_protein2genome ATCAACGGCACTGTTACTGAGAACATGTCTCTAACGGATGCTCGGAAGTTAATAGAAAAGTCTCGAGGAAAACTGCAGCTTGTGGTGTTGAGAGACAGCAAGCAGACCCTCATCAACATCCCAGCCCTAAACGACAGCGACTCTGAAGTGGAGG gcctaccttatagtggccctgcacatcattgtttccttcttctccctaagATTAATGGCACTGCTACAAAGAATATGTCTCTCGCTGATGCTCAGAAGTTGGTAGAAAAATCCCGAGGAAAGCTGCAGCTTGTGGTGTTGAGAGACACTAAGCAGACCCTCATCAACATCCCAGCCCTGAATGACAGTGACTCAGAAGTTGAGGgtaagtagtctacgtgctgggctgaacatctaaaaatccaaccaactcgt Alignment from Exonerate_coding2genome ATCAACGGCACTGTTACTGAGAACATGTCTCTAACGGATGCTCGGAAGTTAATAGAAAAGTCTCGAGGAAAACTGCAGCTTGTGGTGTTGAGAGACAGCAAGCAGACCCTCATCAACATCCCAGCCCTAAACGACAGCGACTCTGAAGTGGAGG gcctaccttatagtggccctgcacatcattgtttccttcttctccctaagATTAATGGCACTGCTACAAAGAATATGTCTCTCGCTGATGCTCAGAAGTTGGTAGAAAAATCCCGAGGAAAGCTGCAGCTTGTGGTGTTGAGAGACACTAAGCAGACCCTCATCAACATCCCAGCCCTGAATGACAGTGACTCAGAAGTTGAGGgtaagtagtctacgtgctgggctgaacatctaaaaatccaaccaactcgt Alignment from GeneWise ATCAACGGCACTGTTACTGAGAACATGTCTCTAACGGATGCTCGGAAGTTAATAGAAAAGTCTCGAGGAAAACTGCAGCTTGTGGTGTTGAGAGACAGCAAGCAGACCCTCATCAACATCCCAGCCCTAAACGACAGCGACTCTGAAGTGGAGG gcctaccttatagtggccctgcacatcattgtttccttcttctccctaagATTAATGGCACTGCTACAAAGAATATGTCTCTCGCTGATGCTCAGAAGTTGGTAGAAAAATCCCGAGGAAAGCTGCAGCTTGTGGTGTTGAGAGACACTAAGCAGACCCTCATCAACATCCCAGCCCTGAATGACAGTGACTCAGAAGTTGAGGgtaagtagtctacgtgctgggctgaacatctaaaaatccaaccaactcgt #### Tjp2_ID5284_3 --> 0 - 2 Original Alignment GATTCCAAAAGAGGATTTGGAATTGCCGTGTCGGGAGGCAGAGACAACCCCCACTTTGAAAATGGGGAGACGTCAATCGTCATCTCAGATGTGCTCCCAGGTGGACCCGCTGATGGCTTGCTTca ctcctttagttcttatgtctcctctacaatgaaatctggtttaacctcagGATTCCAGGAAAGGATTTGGGATTGCTGTTTCAGGTGGCAAAGATAACCCTCACCTTGAAAATGGGGAGGCATCAATTGTCATCTCAGATGTGCTC---------CCTGCTGATGGCTTGCTCaagtaacccagcccctgtgcacctttttggtccctaccccatagccttgctt Alignment from CESAR GATTCCAAAAGAGGATTTGGAATTGCCGTGTCGGGAGGCAGAGACAACCCCCACTTTGAAAATGGGGAGACGTCAATCGTCATCTCAGATGTGCTCCCAGGTGGACCCGCTGATGGCTTGCTTca ctcctttagttcttatgtctcctctacaatgaaatctggtttaacctcagGATTCCAGGAAAGGATTTGGGATTGCTGTTTCAGGTGGCAAAGATAACCCTCACCTTGAAAATGGGGAGGCATCAATTGTCATCTCAGATGTGCTC---------CCTGCTGATGGCTTGCTCaagtaacccagcccctgtgcacctttttggtccctaccccatagccttgctt Alignment from Spaln_aa2Genome GATTCCAAAAGAGGATTTGGAATTGCCGTGTCGGGAGGCAGAGACAACCCCCACTTTGAAAATGGGGAGACGTCAATCGTCATCTCAGATGTGCTCCCAGGTGGACCCGCTGATGGCTTGCTTCA ctcctttagttcttatgtctcctctacaatgaaatctggtttaacctcagGATTCCAGGAAAGGATTTGGGATTGCTGTTTCAGGTGGCAAAGATAACCCTCACCTTGAAAATGGGGAGGCATCAATTGTCATCTCAGATGTGCTC---------CCTGCTGATGGCTTGCTCAAgtaacccagcccctgtgcacctttttggtccctaccccatagccttgctt Alignment from Spaln_nt2Genome GATTCCAAAAGAGGATTTGGAATTGCCGTGTCGGGAGGCAGAGACAACCCCCACTTTGAAAATGGGGAGACGTCAATCGTCATCTCAGATGTGCTCCCAGGTGGACCCGCTGATGGCTTGCTTCA ctcctttagttcttatgtctcctctacaatgaaatctggtttaacctcagGATTCCAGGAAAGGATTTGGGATTGCTGTTTCAGGTGGCAAAGATAACCCTCACCTTGAAAATGGGGAGGCATCAATTGTCATCTCAGATGTGCTC---------CCTGCTGATGGCTTGCTCAAgtaacccagcccctgtgcacctttttggtccctaccccatagccttgctt Alignment from Pairagon GATTCCAAAAGAGGATTTGGAATTGCCGTGTCGGGAGGCAGAGACAACCCCCACTTTGAAAATGGGGAGACGTCAATCGTCATCTCAGATGTGCTCCCAGGTGGACCCGCTGATGGCTTGCTTCA ctcctttagttcttatgtctcctctacaatgaaatctggtttaacctcagGATTCCAGGAAAGGATTTGGGATTGCTGTTTCAGGTGGCAAAGATAACCCTCACCTTGAAAATGGGGAGGCATCAATTGTCATCTCAGATGTGCTC---------CCTGCTGATGGCTTGCTCAAgtaacccagcccctgtgcacctttttggtccctaccccatagccttgctt Alignment from Exonerate_protein2genome GATTCCAAAAGAGGATTTGGAATTGCCGTGTCGGGAGGCAGAGACAACCCCCACTTTGAAAATGGGGAGACGTCAATCGTCATCTCAGATGTGCTCCCAGGTGGACCCGCTGATGGCTTGCTTCA ctcctttagttcttatgtctcctctacaatgaaatctggtttaacctcagGATTCCAGGAAAGGATTTGGGATTGCTGTTTCAGGTGGCAAAGATAACCCTCACCTTGAAAATGGGGAGGCATCAATTGTCATCTCAGATGTGCTC---------CCTGCTGATGGCTTGCTCAAgtaacccagcccctgtgcacctttttggtccctaccccatagccttgctt Alignment from Exonerate_coding2genome GATTCCAAAAGAGGATTTGGAATTGCCGTGTCGGGAGGCAGAGACAACCCCCACTTTGAAAATGGGGAGACGTCAATCGTCATCTCAGATGTGCTCCCAGGTGGACCCGCTGATGGCTTGCTTCA ctcctttagttcttatgtctcctctacaatgaaatctggtttaacctcagGATTCCAGGAAAGGATTTGGGATTGCTGTTTCAGGTGGCAAAGATAACCCTCACCTTGAAAATGGGGAGGCATCAATTGTCATCTCAGATGTGCTC---------CCTGCTGATGGCTTGCTCAAgtaacccagcccctgtgcacctttttggtccctaccccatagccttgctt Alignment from GeneWise GATTCCAAAAGAGGATTTGGAATTGCCGTGTCGGGAGGCAGAGACAACCCCCACTTTGAAAATGGGGAGACGTCAATCGTCATCTCAGATGTGCTCCCAGGTGGACCCGCTGATGGCTTGCTTCA ctcctttagttcttatgtctcctctacaatgaaatctggtttaacctcagGATTCCAGGAAAGGATTTGGGATTGCTGTTTCAGGTGGCAAAGATAACCCTCACCTTGAAAATGGGGAGGCATCAATTGTCATCTCAGATGTGCTCCCT---------GCTGATGGCTTGCTCAAgtaacccagcccctgtgcacctttttggtccctaccccatagccttgctt #### Tjp2_ID5285_2 --> 0 - 0 Original Alignment GGTCCAGGCATGGAGGAGGTGATATGGGAGCAGTACACCGTGACCCTGCAGAAG taaataaacaccataggatggggcacttattaaatcatcttcccatgcagGGTCCAGGCATGGAGGAGGTGATATGGGAGCAGTACACTGTGACCCTCCAGAAGgtggggttgtggtgccccttccttgttctgtgttgccttcataggttttg Alignment from CESAR GGTCCAGGCATGGAGGAGGTGATATGGGAGCAGTACACCGTGACCCTGCAGAAG taaataaacaccataggatggggcacttattaaatcatcttcccatgcagGGTCCAGGCATGGAGGAGGTGATATGGGAGCAGTACACTGTGACCCTCCAGAAGgtggggttgtggtgccccttccttgttctgtgttgccttcataggttttg Alignment from Spaln_aa2Genome GGTCCAGGCATGGAGGAGGTGATATGGGAGCAGTACACCGTGACCCTGCAGAAG taaataaacaccataggatggggcacttattaaatcatcttcccatgcagGGTCCAGGCATGGAGGAGGTGATATGGGAGCAGTACACTGTGACCCTCCAGAAGgtggggttgtggtgccccttccttgttctgtgttgccttcataggttttg Alignment from Spaln_nt2Genome GGTCCAGGCATGGAGGAGGTGATATGGGAGCAGTACACCGTGACCCTGCAGAAG taaataaacaccataggatggggcacttattaaatcatcttcccatgcagGGTCCAGGCATGGAGGAGGTGATATGGGAGCAGTACACTGTGACCCTCCAGAAGgtggggttgtggtgccccttccttgttctgtgttgccttcataggttttg Alignment from Pairagon GGTCCAGGCATGGAGGAGGTGATATGGGAGCAGTACACCGTGACCCTGCAGAAG taaataaacaccataggatggggcacttattaaatcatcttcccatgcagGGTCCAGGCATGGAGGAGGTGATATGGGAGCAGTACACTGTGACCCTCCAGAAGgtggggttgtggtgccccttccttgttctgtgttgccttcataggttttg Alignment from Exonerate_protein2genome GGTCCAGGCATGGAGGAGGTGATATGGGAGCAGTACACCGTGACCCTGCAGAAG taaataaacaccataggatggggcacttattaaatcatcttcccatgcagGGTCCAGGCATGGAGGAGGTGATATGGGAGCAGTACACTGTGACCCTCCAGAAGgtggggttgtggtgccccttccttgttctgtgttgccttcataggttttg Alignment from Exonerate_coding2genome CAGCGCGGTCCAGGCATGGAGGAGGTGATATGGGAGCAGTACACCGTGACCCTGCAGAAG taaataaacaccataggatggggcacttattaaatcatcttcccATGCAGGGTCCAGGCATGGAGGAGGTGATATGGGAGCAGTACACTGTGACCCTCCAGAAGgtggggttgtggtgccccttccttgttctgtgttgccttcataggttttg Alignment from GeneWise GGTCCAGGCATGGAGGAGGTGATATGGGAGCAGTACACCGTGACCCTGCAGAAG taaataaacaccataggatggggcacttattaaatcatcttcccatgcagGGTCCAGGCATGGAGGAGGTGATATGGGAGCAGTACACTGTGACCCTCCAGAAGgtggggttgtggtgccccttccttgttctgtgttgccttcataggttttg #### Tle4_ID3619_18 --> 0 - 1 Original Alignment ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTg tttgcttcaaggggaagtgttgtcaaccttgtactgtgtcccatctccagATTTTTTCATTGGGATACTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTCCTGTCCCTCAAGTTTGCCCAATGCagtaaccgtactcccagtgtctagcttcaaatactgtgaagttgcttggtt Alignment from CESAR ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTg tttgcttcaaggggaagtgttgtcaaccttgtactgtgtcccatctccagATTTTTTCATTGGGATACTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTCCTGTCCCTCAAGTTTGCCCAATGCagtaaccgtactcccagtgtctagcttcaaatactgtgaagttgcttggtt Alignment from Spaln_aa2Genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tttgcttcaaggggaagtgttgtcaaccttgtactgtgtcccatctccagATTTTTTCATTGGGATACTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTCCTGTCCCTCAAGTTTGCCCAATGCAgtaaccgtactcccagtgtctagcttcaaatactgtgaagttgcttggtt Alignment from Spaln_nt2Genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tttgcttcaaggggaagtgttgtcaaccttgtactgtgtcccatctccagATTTTTTCATTGGGATACTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTCCTGTCCCTCAAGTTTGCCCAATGCAgtaaccgtactcccagtgtctagcttcaaatactgtgaagttgcttggtt Alignment from Pairagon ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tttgcttcaaggggaagtgttgtcaaccttgtactgtgtcccatctccagATTTTTTCATTGGGATACTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTCCTGTCCCTCAAGTTTGCCCAATGCAgtaaccgtactcccagtgtctagcttcaaatactgtgaagttgcttggtt Alignment from Exonerate_protein2genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tttgcttcaaggggaagtgttgtcaaccttgtactgtgtcccatctccagATTTTTTCATTGGGATACTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTCCTGTCCCTCAAGTTTGCCCAATGCAgtaaccgtactcccagtgtctagcttcaaatactgtgaagttgcttggtt Alignment from Exonerate_coding2genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tttgcttcaaggggaagtgttgtcaaccttgtactgtgtcccatctccagATTTTTTCATTGGGATACTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTCCTGTCCCTCAAGTTTGCCCAATGCAgtaaccgtactcccagtgtctagcttcaaatactgtgaagttgcttggtt Alignment from GeneWise ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tttgcttcaaggggaagtgttgtcaaccttgtactgtgtcccatctccagATTTTTTCATTGGGATACTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTCCTGTCCCTCAAGTTTGCCCAATGCAgtaaccgtactcccagtgtctagcttcaaatactgtgaagttgcttggtt #### Tle4_ID3626_12 --> 0 - 1 Original Alignment AATGAAAAGTCTACTACTCCTGTTTCAAAGTCCAATACCCCTACTCCACGAACTGATGCACCTACCCCTGGCAGTAATTCTACTCCTGGACTGAGGCCTGTACCTGGAAAGCCACCAGGTGTGGACCCCTTAg agaatgaaaggttcctatgaacacagttcctgactcctgcctctccccagAATGAAAGGTTTACTACTCCTGTTACTAAGTTCAATACCCCTACCCCACGGACTGAGACACCTACCCCAGGCAGCAATTCAACCCCAGGACTGAGACCTGTACCTGGAAAACCACCAGGAGTTGACCCCTTAggtatgacactatctacacagcctgcatacttcttttaaaggtgcagttga Alignment from CESAR AATGAAAAGTCTACTACTCCTGTTTCAAAGTCCAATACCCCTACTCCACGAACTGATGCACCTACCCCTGGCAGTAATTCTACTCCTGGACTGAGGCCTGTACCTGGAAAGCCACCAGGTGTGGACCCCTTAg agaatgaaaggttcctatgaacacagttcctgactcctgcctctccccagAATGAAAGGTTTACTACTCCTGTTACTAAGTTCAATACCCCTACCCCACGGACTGAGACACCTACCCCAGGCAGCAATTCAACCCCAGGACTGAGACCTGTACCTGGAAAACCACCAGGAGTTGACCCCTTAggtatgacactatctacacagcctgcatacttcttttaaaggtgcagttga Alignment from Spaln_aa2Genome AATGAAAAGTCTACTACTCCTGTTTCAAAGTCCAATACCCCTACTCCACGAACTGATGCACCTACCCCTGGCAGTAATTCTACTCCTGGACTGAGGCCTGTACCTGGAAAGCCACCAGGTGTGGACCCCTTAG agaatgaaaggttcctatgaacacagttcctgactcctgcctctccccagAATGAAAGGTTTACTACTCCTGTTACTAAGTTCAATACCCCTACCCCACGGACTGAGACACCTACCCCAGGCAGCAATTCAACCCCAGGACTGAGACCTGTACCTGGAAAACCACCAGGAGTTGACCCCTTAGgtatgacactatctacacagcctgcatacttcttttaaaggtgcagttga Alignment from Spaln_nt2Genome AATGAAAAGTCTACTACTCCTGTTTCAAAGTCCAATACCCCTACTCCACGAACTGATGCACCTACCCCTGGCAGTAATTCTACTCCTGGACTGAGGCCTGTACCTGGAAAGCCACCAGGTGTGGACCCCTTAG agaatgaaaggttcctatgaacacagttcctgactcctgcctctccccagAATGAAAGGTTTACTACTCCTGTTACTAAGTTCAATACCCCTACCCCACGGACTGAGACACCTACCCCAGGCAGCAATTCAACCCCAGGACTGAGACCTGTACCTGGAAAACCACCAGGAGTTGACCCCTTAGgtatgacactatctacacagcctgcatacttcttttaaaggtgcagttga Alignment from Pairagon AATGAAAAGTCTACTACTCCTGTTTCAAAGTCCAATACCCCTACTCCACGAACTGATGCACCTACCCCTGGCAGTAATTCTACTCCTGGACTGAGGCCTGTACCTGGAAAGCCACCAGGTGTGGACCCCTTAG agaatgaaaggttcctatgaacacagttcctgactcctgcctctccccagAATGAAAGGTTTACTACTCCTGTTACTAAGTTCAATACCCCTACCCCACGGACTGAGACACCTACCCCAGGCAGCAATTCAACCCCAGGACTGAGACCTGTACCTGGAAAACCACCAGGAGTTGACCCCTTAGgtatgacactatctacacagcctgcatacttcttttaaaggtgcagttga Alignment from Exonerate_protein2genome AATGAAAAGTCTACTACTCCTGTTTCAAAGTCCAATACCCCTACTCCACGAACTGATGCACCTACCCCTGGCAGTAATTCTACTCCTGGACTGAGGCCTGTACCTGGAAAGCCACCAGGTGTGGACCCCTTAG agaatgaaaggttcctatgaacacagttcctgactcctgcctctccccagAATGAAAGGTTTACTACTCCTGTTACTAAGTTCAATACCCCTACCCCACGGACTGAGACACCTACCCCAGGCAGCAATTCAACCCCAGGACTGAGACCTGTACCTGGAAAACCACCAGGAGTTGACCCCTTAGgtatgacactatctacacagcctgcatacttcttttaaaggtgcagttga Alignment from Exonerate_coding2genome AATGAAAAGTCTACTACTCCTGTTTCAAAGTCCAATACCCCTACTCCACGAACTGATGCACCTACCCCTGGCAGTAATTCTACTCCTGGACTGAGGCCTGTACCTGGAAAGCCACCAGGTGTGGACCCCTTAG agaatgaaaggttcctatgaacacagttcctgactcctgcctctccccagAATGAAAGGTTTACTACTCCTGTTACTAAGTTCAATACCCCTACCCCACGGACTGAGACACCTACCCCAGGCAGCAATTCAACCCCAGGACTGAGACCTGTACCTGGAAAACCACCAGGAGTTGACCCCTTAGgtatgacactatctacacagcctgcatacttcttttaaaggtgcagttga Alignment from GeneWise AATGAAAAGTCTACTACTCCTGTTTCAAAGTCCAATACCCCTACTCCACGAACTGATGCACCTACCCCTGGCAGTAATTCTACTCCTGGACTGAGGCCTGTACCTGGAAAGCCACCAGGTGTGGACCCCTTAG agaatgaaaggttcctatgaacacagttcctgactcctgcctctccccagAATGAAAGGTTTACTACTCCTGTTACTAAGTTCAATACCCCTACCCCACGGACTGAGACACCTACCCCAGGCAGCAATTCAACCCCAGGACTGAGACCTGTACCTGGAAAACCACCAGGAGTTGACCCCTTAGgtatgacactatctacacagcctgcatacttcttttaaaggtgcagttga #### Tle4_ID3657_7 --> 0 - 1 Original Alignment CAACAACTCCAAGCTCAGCATTTATCACATGGACATGGTCTGCCTGTGCCTCTGACACCACACCCTTCAGGGCTTCAGCCCCCAGCCATCCCACCTATCGGTAGCAGTGCAGGACTTCTGGCCCTCTCCAGTGCACTAGGAGGTCAGTCTCACCTCCCAATTAAGGATGAGAAGAAGCACCATGACAATGATCACCAAAGAg catgcttctgctgctggaaatgcaattcagctccctgccctgtgttacagCAGCAACTTCAAGCCCAGCATTTATCACATGGACATGGTTTACCTGTGTCCTTAACACCACACCCTTCAGGGCTTCAGCCTCCAGCTATCCCTCCTATTGGTAGCAGTGCAGGACTACTGGCACTGTCTAGTGCACTCGGAGGGCAGTCTCACCCCCCAATCAAAGATGAGAAGAAACACCATGATAATGACCACCAAAGAggtaaccgaagaccaaattctcatgtgtagcattatacacccttgtgtgtt Alignment from CESAR CAACAACTCCAAGCTCAGCATTTATCACATGGACATGGTCTGCCTGTGCCTCTGACACCACACCCTTCAGGGCTTCAGCCCCCAGCCATCCCACCTATCGGTAGCAGTGCAGGACTTCTGGCCCTCTCCAGTGCACTAGGAGGTCAGTCTCACCTCCCAATTAAGGATGAGAAGAAGCACCATGACAATGATCACCAAAGAg catgcttctgctgctggaaatgcaattcagctccctgccctgtgttacagCAGCAACTTCAAGCCCAGCATTTATCACATGGACATGGTTTACCTGTGTCCTTAACACCACACCCTTCAGGGCTTCAGCCTCCAGCTATCCCTCCTATTGGTAGCAGTGCAGGACTACTGGCACTGTCTAGTGCACTCGGAGGGCAGTCTCACCCCCCAATCAAAGATGAGAAGAAACACCATGATAATGACCACCAAAGAggtaaccgaagaccaaattctcatgtgtagcattatacacccttgtgtgtt Alignment from Spaln_aa2Genome CAACAACTCCAAGCTCAGCATTTATCACATGGACATGGTCTGCCTGTGCCTCTGACACCACACCCTTCAGGGCTTCAGCCCCCAGCCATCCCACCTATCGGTAGCAGTGCAGGACTTCTGGCCCTCTCCAGTGCACTAGGAGGTCAGTCTCACCTCCCAATTAAGGATGAGAAGAAGCACCATGACAATGATCACCAAAGAG catgcttctgctgctggaaatgcaattcagctccctgccctgtgttacagCAGCAACTTCAAGCCCAGCATTTATCACATGGACATGGTTTACCTGTGTCCTTAACACCACACCCTTCAGGGCTTCAGCCTCCAGCTATCCCTCCTATTGGTAGCAGTGCAGGACTACTGGCACTGTCTAGTGCACTCGGAGGGCAGTCTCACCCCCCAATCAAAGATGAGAAGAAACACCATGATAATGACCACCAAAGAGgtaaccgaagaccaaattctcatgtgtagcattatacacccttgtgtgtt Alignment from Spaln_nt2Genome CAACAACTCCAAGCTCAGCATTTATCACATGGACATGGTCTGCCTGTGCCTCTGACACCACACCCTTCAGGGCTTCAGCCCCCAGCCATCCCACCTATCGGTAGCAGTGCAGGACTTCTGGCCCTCTCCAGTGCACTAGGAGGTCAGTCTCACCTCCCAATTAAGGATGAGAAGAAGCACCATGACAATGATCACCAAAGAG catgcttctgctgctggaaatgcaattcagctccctgccctgtgttacagCAGCAACTTCAAGCCCAGCATTTATCACATGGACATGGTTTACCTGTGTCCTTAACACCACACCCTTCAGGGCTTCAGCCTCCAGCTATCCCTCCTATTGGTAGCAGTGCAGGACTACTGGCACTGTCTAGTGCACTCGGAGGGCAGTCTCACCCCCCAATCAAAGATGAGAAGAAACACCATGATAATGACCACCAAAGAGgtaaccgaagaccaaattctcatgtgtagcattatacacccttgtgtgtt Alignment from Pairagon CAACAACTCCAAGCTCAGCATTTATCACATGGACATGGTCTGCCTGTGCCTCTGACACCACACCCTTCAGGGCTTCAGCCCCCAGCCATCCCACCTATCGGTAGCAGTGCAGGACTTCTGGCCCTCTCCAGTGCACTAGGAGGTCAGTCTCACCTCCCAATTAAGGATGAGAAGAAGCACCATGACAATGATCACCAAAGAG catgcttctgctgctggaaatgcaattcagctccctgccctgtgttacagCAGCAACTTCAAGCCCAGCATTTATCACATGGACATGGTTTACCTGTGTCCTTAACACCACACCCTTCAGGGCTTCAGCCTCCAGCTATCCCTCCTATTGGTAGCAGTGCAGGACTACTGGCACTGTCTAGTGCACTCGGAGGGCAGTCTCACCCCCCAATCAAAGATGAGAAGAAACACCATGATAATGACCACCAAAGAGgtaaccgaagaccaaattctcatgtgtagcattatacacccttgtgtgtt Alignment from Exonerate_protein2genome CAACAACTCCAAGCTCAGCATTTATCACATGGACATGGTCTGCCTGTGCCTCTGACACCACACCCTTCAGGGCTTCAGCCCCCAGCCATCCCACCTATCGGTAGCAGTGCAGGACTTCTGGCCCTCTCCAGTGCACTAGGAGGTCAGTCTCACCTCCCAATTAAGGATGAGAAGAAGCACCATGACAATGATCACCAAAGAG catgcttctgctgctggaaatgcaattcagctccctgccctgtgttacagCAGCAACTTCAAGCCCAGCATTTATCACATGGACATGGTTTACCTGTGTCCTTAACACCACACCCTTCAGGGCTTCAGCCTCCAGCTATCCCTCCTATTGGTAGCAGTGCAGGACTACTGGCACTGTCTAGTGCACTCGGAGGGCAGTCTCACCCCCCAATCAAAGATGAGAAGAAACACCATGATAATGACCACCAAAGAGgtaaccgaagaccaaattctcatgtgtagcattatacacccttgtgtgtt Alignment from Exonerate_coding2genome CAACAACTCCAAGCTCAGCATTTATCACATGGACATGGTCTGCCTGTGCCTCTGACACCACACCCTTCAGGGCTTCAGCCCCCAGCCATCCCACCTATCGGTAGCAGTGCAGGACTTCTGGCCCTCTCCAGTGCACTAGGAGGTCAGTCTCACCTCCCAATTAAGGATGAGAAGAAGCACCATGACAATGATCACCAAAGAG catgcttctgctgctggaaatgcaattcagctccctgccctgtgttacagCAGCAACTTCAAGCCCAGCATTTATCACATGGACATGGTTTACCTGTGTCCTTAACACCACACCCTTCAGGGCTTCAGCCTCCAGCTATCCCTCCTATTGGTAGCAGTGCAGGACTACTGGCACTGTCTAGTGCACTCGGAGGGCAGTCTCACCCCCCAATCAAAGATGAGAAGAAACACCATGATAATGACCACCAAAGAGgtaaccgaagaccaaattctcatgtgtagcattatacacccttgtgtgtt Alignment from GeneWise CAACAACTCCAAGCTCAGCATTTATCACATGGACATGGTCTGCCTGTGCCTCTGACACCACACCCTTCAGGGCTTCAGCCCCCAGCCATCCCACCTATCGGTAGCAGTGCAGGACTTCTGGCCCTCTCCAGTGCACTAGGAGGTCAGTCTCACCTCCCAATTAAGGATGAGAAGAAGCACCATGACAATGATCACCAAAGAGAC------AGAGACTCCATCAAG catgcttctgctgctggaaatgcaattcagctccctgccctgtgttacagCAGCAACTTCAAGCCCAGCATTTATCACATGGACATGGTTTACCTGTGTCCTTAACACCACACCCTTCAGGGCTTCAGCCTCCAGCTATCCCTCCTATTGGTAGCAGTGCAGGACTACTGGCACTGTCTAGTGCACTCGGAGGGCAGTCTCACCCCCCAATCAAAGATGAGAAGAAACACCATGATAATGACCACCAAAGAGGTAACCGAAGACCAAATTCTCATgtgtagcattatacacccttgtgtgtt #### Tll2_ID8102_17 --> 2 - 1 Original Alignment acAAAGACGAGTGTGCCAAAGACAATGGCGGCTGCCAGCAGGAGTGTGTCAACACGTTCGGGAGTTACCTGTGCAGATGCAGGAACGGGTACCGACTGCATGAGAACGGACACGACTGCAAAGAGg ccaacaacttctaggcaggtgcccctggcccctccctccgctcctcccagacAAAGACAAGTGTGCCAAAGACAATGGAGGCTGCCAGCAAGAGTGCATTAACATATTTGGAACATACCTGTGTAGATGTAGGAATGCTTATATACTAGATGAAAAAGGACATGACTGCAAAGGGggtatgaacagcctgcaggatgggcatagcggagactaaaggacagatata Alignment from CESAR acAAAGACGAGTGTGCCAAAGACAATGGCGGCTGCCAGCAGGAGTGTGTCAACACGTTCGGGAGTTACCTGTGCAGATGCAGGAACGGGTACCGACTGCATGAGAACGGACACGACTGCAAAGAGg ccaacaacttctaggcaggtgcccctggcccctccctccgctcctcccagacAAAGACAAGTGTGCCAAAGACAATGGAGGCTGCCAGCAAGAGTGCATTAACATATTTGGAACATACCTGTGTAGATGTAGGAATGCTTATATACTAGATGAAAAAGGACATGACTGCAAAGGGggtatgaacagcctgcaggatgggcatagcggagactaaaggacagatata Alignment from Spaln_aa2Genome ACAAAGACGAGTGTGCCAAAGACAATGGCGGCTGCCAGCAGGAGTGTGTCAACACGTTCGGGAGTTACCTGTGCAGATGCAGGAACGGGTACCGACTGCATGAGAACGGACACGACTGCAAAGAGG ccaacaacttctaggcaggtgcccctggcccctccctccgctcctcccagACAAAGACAAGTGTGCCAAAGACAATGGAGGCTGCCAGCAAGAGTGCATTAACATATTTGGAACATACCTGTGTAGATGTAGGAATGCTTATATACTAGATGAAAAAGGACATGACTGCAAAGGGGgtatgaacagcctgcaggatgggcatagcggagactaaaggacagatata Alignment from Spaln_nt2Genome ACAAAGACGAGTGTGCCAAAGACAATGGCGGCTGCCAGCAGGAGTGTGTCAACACGTTCGGGAGTTACCTGTGCAGATGCAGGAACGGGTACCGACTGCATGAGAACGGACACGACTGCAAAGAGG ccaacaacttctaggcaggtgcccctggcccctccctccgctcctcccagACAAAGACAAGTGTGCCAAAGACAATGGAGGCTGCCAGCAAGAGTGCATTAACATATTTGGAACATACCTGTGTAGATGTAGGAATGCTTATATACTAGATGAAAAAGGACATGACTGCAAAGGGGgtatgaacagcctgcaggatgggcatagcggagactaaaggacagatata Alignment from Pairagon ACAAAGACGAGTGTGCCAAAGACAATGGCGGCTGCCAGCAGGAGTGTGTCAACACGTTCGGGAGTTACCTGTGCAGATGCAGGAACGGGTACCGACTGCATGAGAACGGACACGACTGCAAAGAGG ccaacaacttctaggcaggtgcccctggcccctccctccgctcctcccagACAAAGACAAGTGTGCCAAAGACAATGGAGGCTGCCAGCAAGAGTGCATTAACATATTTGGAACATACCTGTGTAGATGTAGGAATGCTTATATACTAGATGAAAAAGGACATGACTGCAAAGGGGgtatgaacagcctgcaggatgggcatagcggagactaaaggacagatata Alignment from Exonerate_protein2genome ACAAAGACGAGTGTGCCAAAGACAATGGCGGCTGCCAGCAGGAGTGTGTCAACACGTTCGGGAGTTACCTGTGCAGATGCAGGAACGGGTACCGACTGCATGAGAACGGACACGACTGCAAAGAGG ccaacaacttctaggcaggtgcccctggcccctccctccgctcctcccagACAAAGACAAGTGTGCCAAAGACAATGGAGGCTGCCAGCAAGAGTGCATTAACATATTTGGAACATACCTGTGTAGATGTAGGAATGCTTATATACTAGATGAAAAAGGACATGACTGCAAAGGGGgtatgaacagcctgcaggatgggcatagcggagactaaaggacagatata Alignment from Exonerate_coding2genome ACAAAGACGAGTGTGCCAAAGACAATGGCGGCTGCCAGCAGGAGTGTGTCAACACGTTCGGGAGTTACCTGTGCAGATGCAGGAACGGGTACCGACTGCATGAGAACGGACACGACTGCAAAGAGG ccaacaacttctaggcaggtgcccctggcccctccctccgctcctcccagACAAAGACAAGTGTGCCAAAGACAATGGAGGCTGCCAGCAAGAGTGCATTAACATATTTGGAACATACCTGTGTAGATGTAGGAATGCTTATATACTAGATGAAAAAGGACATGACTGCAAAGGGGgtatgaacagcctgcaggatgggcatagcggagactaaaggacagatata Alignment from GeneWise ACAAAGACGAGTGTGCCAAAGACAATGGCGGCTGCCAGCAGGAGTGTGTCAACACGTTCGGGAGTTACCTGTGCAGATGCAGGAACGGGTACCGACTGCATGAGAACGGACACGACTGCAAAGAGG ccaacaacttctaggcaggtgcccctggcccctccctccgctcctcccagACAAAGACAAGTGTGCCAAAGACAATGGAGGCTGCCAGCAAGAGTGCATTAACATATTTGGAACATACCTGTGTAGATGTAGGAATGCTTATATACTAGATGAAAAAGGACATGACTGCAAAGGGGgtatgaacagcctgcaggatgggcatagcggagactaaaggacagatata #### Tll2_ID8114_9 --> 2 - 0 Original Alignment caTGTGGGGAGACACTACAGGACACGACAGGAAACTTTTCGGCACCTGGTTTCCCAAATGGCTACCCCTCCTATTCCCACTGCGTCTGGAGGATCTCCGTCACCCCAGGGGAAAAG agaacatggttgccctggaattgtttaactttatgtcttaatttcaacagctTGTGGGAAGACACTTCAAGACACAACTGGTAATTTTTCAGCACCTGGTTTCCCTAATGGGTAC---TCTTATTCCCACTGTGTCTGGAGGATCTCTGTCACCCCGGGGGAAAAGgtatgcaaggaacctagagaatgcagcctgagtctaccagatggtggata Alignment from CESAR caTGTGGGGAGACACTACAGGACACGACAGGAAACTTTTCGGCACCTGGTTTCCCAAATGGCTACCCCTCCTATTCCCACTGCGTCTGGAGGATCTCCGTCACCCCAGGGGAAAAG agaacatggttgccctggaattgtttaactttatgtcttaatttcaacagctTGTGGGAAGACACTTCAAGACACAACTGGTAATTTTTCAGCACCTGGTTTCCCTAATGGGTAC---TCTTATTCCCACTGTGTCTGGAGGATCTCTGTCACCCCGGGGGAAAAGgtatgcaaggaacctagagaatgcagcctgagtctaccagatggtggata Alignment from Spaln_aa2Genome CATGTGGGGAGACACTACAGGACACGACAGGAAACTTTTCGGCACCTGGTTTCCCAAATGGCTACCCCTCCTATTCCCACTGCGTCTGGAGGATCTCCGTCACCCCAGGGGAAAAG agaacatggttgccctggaattgtttaactttatgtcttaatttcaacagCTTGTGGGAAGACACTTCAAGACACAACTGGTAATTTTTCAGCACCTGGTTTCCCTAATGGGTAC---TCTTATTCCCACTGTGTCTGGAGGATCTCTGTCACCCCGGGGGAAAAGgtatgcaaggaacctagagaatgcagcctgagtctaccagatggtggata Alignment from Spaln_nt2Genome CATGTGGGGAGACACTACAGGACACGACAGGAAACTTTTCGGCACCTGGTTTCCCAAATGGCTACCCCTCCTATTCCCACTGCGTCTGGAGGATCTCCGTCACCCCAGGGGAAAAG agaacatggttgccctggaattgtttaactttatgtcttaatttcaacagCTTGTGGGAAGACACTTCAAGACACAACTGGTAATTTTTCAGCACCTGGTTTCCCTAATGGGTA---CTCTTATTCCCACTGTGTCTGGAGGATCTCTGTCACCCCGGGGGAAAAGgtatgcaaggaacctagagaatgcagcctgagtctaccagatggtggata Alignment from Pairagon CATGTGGGGAGACACTACAGGACACGACAGGAAACTTTTCGGCACCTGGTTTCCCAAATGGCTACCCCTCCTATTCCCACTGCGTCTGGAGGATCTCCGTCACCCCAGGGGAAAAG agaacatggttgccctggaattgtttaactttatgtcttaatttcaacagCTTGTGGGAAGACACTTCAAGACACAACTGGTAATTTTTCAGCACCTGGTTTCCCTAATGGGTA---CTCTTATTCCCACTGTGTCTGGAGGATCTCTGTCACCCCGGGGGAAAAGgtatgcaaggaacctagagaatgcagcctgagtctaccagatggtggata Alignment from Exonerate_protein2genome CATGTGGGGAGACACTACAGGACACGACAGGAAACTTTTCGGCACCTGGTTTCCCAAATGGCTACCCCTCCTATTCCCACTGCGTCTGGAGGATCTCCGTCACCCCAGGGGAAAAG agaacatggttgccctggaattgtttaactttatgtcttaatttcaacagCTTGTGGGAAGACACTTCAAGACACAACTGGTAATTTTTCAGCACCTGGTTTCCCTAATGGGTAC---TCTTATTCCCACTGTGTCTGGAGGATCTCTGTCACCCCGGGGGAAAAGgtatgcaaggaacctagagaatgcagcctgagtctaccagatggtggata Alignment from Exonerate_coding2genome CATGTGGGGAGACACTACAGGACACGACAGGAAACTTTTCGGCACCTGGTTTCCCAAATGGCTACCCCTCCTATTCCCACTGCGTCTGGAGGATCTCCGTCACCCCAGGGGAAAAG agaacatggttgccctggaattgtttaactttatgtcttaatttcaacagCTTGTGGGAAGACACTTCAAGACACAACTGGTAATTTTTCAGCACCTGGTTTCCCTAATGGGTAC---TCTTATTCCCACTGTGTCTGGAGGATCTCTGTCACCCCGGGGGAAAAGgtatgcaaggaacctagagaatgcagcctgagtctaccagatggtggata Alignment from GeneWise CATGTGGGGAGACACTACAGGACACGACAGGAAACTTTTCGGCACCTGGTTTCCCAAATGGCTACCCCTCCTATTCCCACTGCGTCTGGAGGATCTCCGTCACCCCAGGGGAAAAG agaacatggttgccctggaattgtttaactttatgtcttaatttcaacagCTTGTGGGAAGACACTTCAAGACACAACTGGTAATTTTTCAGCACCTGGTTTCCCTAATGGGTAC---TCTTATTCCCACTGTGTCTGGAGGATCTCTGTCACCCCGGGGGAAAAGgtatgcaaggaacctagagaatgcagcctgagtctaccagatggtggata #### Tll2_ID8119_7 --> 2 - 2 Original Alignment gtCAGGAGTATAATTTCTTAAAAATGGAAGCCGGCGAGGTGAGCTCTCTGGGAGAGACCTACGACTTCGACAGCATCATGCACTATGCCCGGAACACCTTCTCAag ctgccaggacaaacttatttgtgtgaccatctccctgcttttccttccaggtCAGGAGTATAACTTCTTAAAAATGGAAGCTGGCGAGGTAAGCTCTCTGGGAGAGACCTATGACTTTGACAGCATCATGCACTATGCCCGGAACACCTTCTCAaggtaagttctaggcgaaaaactagcaaatccaatgcctcttttcagaaaga Alignment from CESAR gtCAGGAGTATAATTTCTTAAAAATGGAAGCCGGCGAGGTGAGCTCTCTGGGAGAGACCTACGACTTCGACAGCATCATGCACTATGCCCGGAACACCTTCTCAag ctgccaggacaaacttatttgtgtgaccatctccctgcttttccttccaggtCAGGAGTATAACTTCTTAAAAATGGAAGCTGGCGAGGTAAGCTCTCTGGGAGAGACCTATGACTTTGACAGCATCATGCACTATGCCCGGAACACCTTCTCAaggtaagttctaggcgaaaaactagcaaatccaatgcctcttttcagaaaga Alignment from Spaln_aa2Genome GTCAGGAGTATAATTTCTTAAAAATGGAAGCCGGCGAGGTGAGCTCTCTGGGAGAGACCTACGACTTCGACAGCATCATGCACTATGCCCGGAACACCTTCTCAAG ctgccaggacaaacttatttgtgtgaccatctccctgcttttccttccagGTCAGGAGTATAACTTCTTAAAAATGGAAGCTGGCGAGGTAAGCTCTCTGGGAGAGACCTATGACTTTGACAGCATCATGCACTATGCCCGGAACACCTTCTCAAGgtaagttctaggcgaaaaactagcaaatccaatgcctcttttcagaaaga Alignment from Spaln_nt2Genome GTCAGGAGTATAATTTCTTAAAAATGGAAGCCGGCGAGGTGAGCTCTCTGGGAGAGACCTACGACTTCGACAGCATCATGCACTATGCCCGGAACACCTTCTCAAG ctgccaggacaaacttatttgtgtgaccatctccctgcttttccttccagGTCAGGAGTATAACTTCTTAAAAATGGAAGCTGGCGAGGTAAGCTCTCTGGGAGAGACCTATGACTTTGACAGCATCATGCACTATGCCCGGAACACCTTCTCAAGgtaagttctaggcgaaaaactagcaaatccaatgcctcttttcagaaaga Alignment from Pairagon GTCAGGAGTATAATTTCTTAAAAATGGAAGCCGGCGAGGTGAGCTCTCTGGGAGAGACCTACGACTTCGACAGCATCATGCACTATGCCCGGAACACCTTCTCAAG ctgccaggacaaacttatttgtgtgaccatctccctgcttttccttccagGTCAGGAGTATAACTTCTTAAAAATGGAAGCTGGCGAGGTAAGCTCTCTGGGAGAGACCTATGACTTTGACAGCATCATGCACTATGCCCGGAACACCTTCTCAAGgtaagttctaggcgaaaaactagcaaatccaatgcctcttttcagaaaga Alignment from Exonerate_protein2genome GTCAGGAGTATAATTTCTTAAAAATGGAAGCCGGCGAGGTGAGCTCTCTGGGAGAGACCTACGACTTCGACAGCATCATGCACTATGCCCGGAACACCTTCTCAAG ctgccaggacaaacttatttgtgtgaccatctccctgcttttccttccagGTCAGGAGTATAACTTCTTAAAAATGGAAGCTGGCGAGGTAAGCTCTCTGGGAGAGACCTATGACTTTGACAGCATCATGCACTATGCCCGGAACACCTTCTCAAGgtaagttctaggcgaaaaactagcaaatccaatgcctcttttcagaaaga Alignment from Exonerate_coding2genome GTCAGGAGTATAATTTCTTAAAAATGGAAGCCGGCGAGGTGAGCTCTCTGGGAGAGACCTACGACTTCGACAGCATCATGCACTATGCCCGGAACACCTTCTCAAG ctgccaggacaaacttatttgtgtgaccatctccctgcttttccttccagGTCAGGAGTATAACTTCTTAAAAATGGAAGCTGGCGAGGTAAGCTCTCTGGGAGAGACCTATGACTTTGACAGCATCATGCACTATGCCCGGAACACCTTCTCAAGgtaagttctaggcgaaaaactagcaaatccaatgcctcttttcagaaaga Alignment from GeneWise GTCAGGAGTATAATTTCTTAAAAATGGAAGCCGGCGAGGTGAGCTCTCTGGGAGAGACCTACGACTTCGACAGCATCATGCACTATGCCCGGAACACCTTCTCAAG ctgccaggacaaacttatttgtgtgaccatctccctgcttttccttccagGTCAGGAGTATAACTTCTTAAAAATGGAAGCTGGCGAGGTAAGCTCTCTGGGAGAGACCTATGACTTTGACAGCATCATGCACTATGCCCGGAACACCTTCTCAAGgtaagttctaggcgaaaaactagcaaatccaatgcctcttttcagaaaga #### Tm7sf2_ID1411_9 --> 2 - 1 Original Alignment gtCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTg tgcctagttgaacctgagggcttcaatctccctcttgtttctcccatcaggtCTAGACACCATCCCCACTGCCACGGGTAGACATCTGCTAGTGTCCGGGTGGTGGGGTATGGTACAGCATCCCAACTACCTAGGAGACCTCATCATGGCTCTTGCATGGTCCTTGCCCTGTggtactatgatggggagagcaaggaccatatacctgctacaatgtatccca Alignment from CESAR gtCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTg tgcctagttgaacctgagggcttcaatctccctcttgtttctcccatcaggtCTAGACACCATCCCCACTGCCACGGGTAGACATCTGCTAGTGTCCGGGTGGTGGGGTATGGTACAGCATCCCAACTACCTAGGAGACCTCATCATGGCTCTTGCATGGTCCTTGCCCTGTggtactatgatggggagagcaaggaccatatacctgctacaatgtatccca Alignment from Spaln_aa2Genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctagttgaacctgagggcttcaatctccctcttgtttctcccatcagGTCTAGACACCATCCCCACTGCCACGGGTAGACATCTGCTAGTGTCCGGGTGGTGGGGTATGGTACAGCATCCCAACTACCTAGGAGACCTCATCATGGCTCTTGCATGGTCCTTGCCCTGTGgtactatgatggggagagcaaggaccatatacctgctacaatgtatccca Alignment from Spaln_nt2Genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctagttgaacctgagggcttcaatctccctcttgtttctcccatcagGTCTAGACACCATCCCCACTGCCACGGGTAGACATCTGCTAGTGTCCGGGTGGTGGGGTATGGTACAGCATCCCAACTACCTAGGAGACCTCATCATGGCTCTTGCATGGTCCTTGCCCTGTGgtactatgatggggagagcaaggaccatatacctgctacaatgtatccca Alignment from Pairagon GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctagttgaacctgagggcttcaatctccctcttgtttctcccatcagGTCTAGACACCATCCCCACTGCCACGGGTAGACATCTGCTAGTGTCCGGGTGGTGGGGTATGGTACAGCATCCCAACTACCTAGGAGACCTCATCATGGCTCTTGCATGGTCCTTGCCCTGTGgtactatgatggggagagcaaggaccatatacctgctacaatgtatccca Alignment from Exonerate_protein2genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctagttgaacctgagggcttcaatctccctcttgtttctcccatcagGTCTAGACACCATCCCCACTGCCACGGGTAGACATCTGCTAGTGTCCGGGTGGTGGGGTATGGTACAGCATCCCAACTACCTAGGAGACCTCATCATGGCTCTTGCATGGTCCTTGCCCTGTGgtactatgatggggagagcaaggaccatatacctgctacaatgtatccca Alignment from Exonerate_coding2genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctagttgaacctgagggcttcaatctccctcttgtttctcccatcagGTCTAGACACCATCCCCACTGCCACGGGTAGACATCTGCTAGTGTCCGGGTGGTGGGGTATGGTACAGCATCCCAACTACCTAGGAGACCTCATCATGGCTCTTGCATGGTCCTTGCCCTGTGgtactatgatggggagagcaaggaccatatacctgctacaatgtatccca Alignment from GeneWise GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctagttgaacctgagggcttcaatctccctcttgtttctcccatcagGTCTAGACACCATCCCCACTGCCACGGGTAGACATCTGCTAGTGTCCGGGTGGTGGGGTATGGTACAGCATCCCAACTACCTAGGAGACCTCATCATGGCTCTTGCATGGTCCTTGCCCTGTGgtactatgatggggagagcaaggaccatatacctgctacaatgtatccca #### Tm7sf2_ID1412_8 --> 2 - 1 Original Alignment ttATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTg taggcttggtgttttaaccttccttctcggtggttatcattcttctacagttATTGGTTATTATATCTTCCGAGGGGCGAACTCTGAGAAAAACACTTTCAGGCAGAATCCTTCTGAGCCCAGTGCAGCAggtaacttgggttggtcaggtcttatgcctagttgaacctgagggcttcaa Alignment from CESAR ttATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTg taggcttggtgttttaaccttccttctcggtggttatcattcttctacagttATTGGTTATTATATCTTCCGAGGGGCGAACTCTGAGAAAAACACTTTCAGGCAGAATCCTTCTGAGCCCAGTGCAGCAggtaacttgggttggtcaggtcttatgcctagttgaacctgagggcttcaa Alignment from Spaln_aa2Genome TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG taggcttggtgttttaaccttccttctcggtggttatcattcttctacagTTATTGGTTATTATATCTTCCGAGGGGCGAACTCTGAGAAAAACACTTTCAGGCAGAATCCTTCTGAGCCCAGTGCAGCAGgtaacttgggttggtcaggtcttatgcctagttgaacctgagggcttcaa Alignment from Spaln_nt2Genome TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG taggcttggtgttttaaccttccttctcggtggttatcattcttctacagTTATTGGTTATTATATCTTCCGAGGGGCGAACTCTGAGAAAAACACTTTCAGGCAGAATCCTTCTGAGCCCAGTGCAGCAGgtaacttgggttggtcaggtcttatgcctagttgaacctgagggcttcaa Alignment from Pairagon TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG taggcttggtgttttaaccttccttctcggtggttatcattcttctacagTTATTGGTTATTATATCTTCCGAGGGGCGAACTCTGAGAAAAACACTTTCAGGCAGAATCCTTCTGAGCCCAGTGCAGCAGgtaacttgggttggtcaggtcttatgcctagttgaacctgagggcttcaa Alignment from Exonerate_protein2genome TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG taggcttggtgttttaaccttccttctcggtggttatcattcttctacagTTATTGGTTATTATATCTTCCGAGGGGCGAACTCTGAGAAAAACACTTTCAGGCAGAATCCTTCTGAGCCCAGTGCAGCAGgtaacttgggttggtcaggtcttatgcctagttgaacctgagggcttcaa Alignment from Exonerate_coding2genome TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG taggcttggtgttttaaccttccttctcggtggttatcattcttctacagTTATTGGTTATTATATCTTCCGAGGGGCGAACTCTGAGAAAAACACTTTCAGGCAGAATCCTTCTGAGCCCAGTGCAGCAGgtaacttgggttggtcaggtcttatgcctagttgaacctgagggcttcaa Alignment from GeneWise TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG taggcttggtgttttaaccttccttctcggtggttatcattcttctacagTTATTGGTTATTATATCTTCCGAGGGGCGAACTCTGAGAAAAACACTTTCAGGCAGAATCCTTCTGAGCCCAGTGCAGCAGgtaacttgggttggtcaggtcttatgcctagttgaacctgagggcttcaa #### Tm7sf2_ID1413_7 --> 0 - 1 Original Alignment GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGg aatgtcaagcccgctgctgttaagagagtgaccctctttccttcccacagGAGTCTATCCTCACCACCATGGACATTATACATGATGGGTTTGGCTTCATGCTTGTCTTTGGAGATTTAGCTTGGATACCACTTATCTACAGCCTGCAGGCCCAGTTCCTTTTATACCACCCCCAACCACTAGGGTACCCAATGGCCTTACTCATCTGCCTGCTCCGGggtaattattagaaacccaaaatgcccaatcctgcaccatcacttatgttg Alignment from CESAR GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGg aatgtcaagcccgctgctgttaagagagtgaccctctttccttcccacagGAGTCTATCCTCACCACCATGGACATTATACATGATGGGTTTGGCTTCATGCTTGTCTTTGGAGATTTAGCTTGGATACCACTTATCTACAGCCTGCAGGCCCAGTTCCTTTTATACCACCCCCAACCACTAGGGTACCCAATGGCCTTACTCATCTGCCTGCTCCGGggtaattattagaaacccaaaatgcccaatcctgcaccatcacttatgttg Alignment from Spaln_aa2Genome GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG aatgtcaagcccgctgctgttaagagagtgaccctctttccttcccacagGAGTCTATCCTCACCACCATGGACATTATACATGATGGGTTTGGCTTCATGCTTGTCTTTGGAGATTTAGCTTGGATACCACTTATCTACAGCCTGCAGGCCCAGTTCCTTTTATACCACCCCCAACCACTAGGGTACCCAATGGCCTTACTCATCTGCCTGCTCCGGGgtaattattagaaacccaaaatgcccaatcctgcaccatcacttatgttg Alignment from Spaln_nt2Genome GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG aatgtcaagcccgctgctgttaagagagtgaccctctttccttcccacagGAGTCTATCCTCACCACCATGGACATTATACATGATGGGTTTGGCTTCATGCTTGTCTTTGGAGATTTAGCTTGGATACCACTTATCTACAGCCTGCAGGCCCAGTTCCTTTTATACCACCCCCAACCACTAGGGTACCCAATGGCCTTACTCATCTGCCTGCTCCGGGgtaattattagaaacccaaaatgcccaatcctgcaccatcacttatgttg Alignment from Pairagon GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG aatgtcaagcccgctgctgttaagagagtgaccctctttccttcccacagGAGTCTATCCTCACCACCATGGACATTATACATGATGGGTTTGGCTTCATGCTTGTCTTTGGAGATTTAGCTTGGATACCACTTATCTACAGCCTGCAGGCCCAGTTCCTTTTATACCACCCCCAACCACTAGGGTACCCAATGGCCTTACTCATCTGCCTGCTCCGGGgtaattattagaaacccaaaatgcccaatcctgcaccatcacttatgttg Alignment from Exonerate_protein2genome GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG aatgtcaagcccgctgctgttaagagagtgaccctctttccttcccacagGAGTCTATCCTCACCACCATGGACATTATACATGATGGGTTTGGCTTCATGCTTGTCTTTGGAGATTTAGCTTGGATACCACTTATCTACAGCCTGCAGGCCCAGTTCCTTTTATACCACCCCCAACCACTAGGGTACCCAATGGCCTTACTCATCTGCCTGCTCCGGGgtaattattagaaacccaaaatgcccaatcctgcaccatcacttatgttg Alignment from Exonerate_coding2genome GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG aatgtcaagcccgctgctgttaagagagtgaccctctttccttcccacagGAGTCTATCCTCACCACCATGGACATTATACATGATGGGTTTGGCTTCATGCTTGTCTTTGGAGATTTAGCTTGGATACCACTTATCTACAGCCTGCAGGCCCAGTTCCTTTTATACCACCCCCAACCACTAGGGTACCCAATGGCCTTACTCATCTGCCTGCTCCGGGgtaattattagaaacccaaaatgcccaatcctgcaccatcacttatgttg Alignment from GeneWise GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG aatgtcaagcccgctgctgttaagagagtgaccctctttccttcccacagGAGTCTATCCTCACCACCATGGACATTATACATGATGGGTTTGGCTTCATGCTTGTCTTTGGAGATTTAGCTTGGATACCACTTATCTACAGCCTGCAGGCCCAGTTCCTTTTATACCACCCCCAACCACTAGGGTACCCAATGGCCTTACTCATCTGCCTGCTCCGGGgtaattattagaaacccaaaatgcccaatcctgcaccatcacttatgttg #### Tm7sf2_ID1416_4 --> 2 - 1 Original Alignment gcTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAg ctttcctagtatgtgtactgaccctgagctctcatgtgcttctctttcaggtTACCAGGCTGTGGTTCTATCAGCACTGTTAATGGGGCTGGGTGTATCTGTGGGGCTCCCCCTTGGGGGACTACCTGGAATGCTTCTGCCACTGGCCTTTGCAACCACTCTCACCAGGTTTGTCTTCAGTCTCCTACTCTACACAAAGGCTTTGGTAACACCTGCCTTAGCTCTGAATTCTGGGGGAAACTCAggtgagtagggtcccaaccaggtctcaacaggtgagggtgtagaaaggatg Alignment from CESAR gcTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAg ctttcctagtatgtgtactgaccctgagctctcatgtgcttctctttcaggtTACCAGGCTGTGGTTCTATCAGCACTGTTAATGGGGCTGGGTGTATCTGTGGGGCTCCCCCTTGGGGGACTACCTGGAATGCTTCTGCCACTGGCCTTTGCAACCACTCTCACCAGGTTTGTCTTCAGTCTCCTACTCTACACAAAGGCTTTGGTAACACCTGCCTTAGCTCTGAATTCTGGGGGAAACTCAggtgagtagggtcccaaccaggtctcaacaggtgagggtgtagaaaggatg Alignment from Spaln_aa2Genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtgtactgaccctgagctctcatgtgcttctctttcagGTTACCAGGCTGTGGTTCTATCAGCACTGTTAATGGGGCTGGGTGTATCTGTGGGGCTCCCCCTTGGGGGACTACCTGGAATGCTTCTGCCACTGGCCTTTGCAACCACTCTCACCAGGTTTGTCTTCAGTCTCCTACTCTACACAAAGGCTTTGGTAACACCTGCCTTAGCTCTGAATTCTGGGGGAAACTCAGgtgagtagggtcccaaccaggtctcaacaggtgagggtgtagaaaggatg Alignment from Spaln_nt2Genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtgtactgaccctgagctctcatgtgcttctctttcagGTTACCAGGCTGTGGTTCTATCAGCACTGTTAATGGGGCTGGGTGTATCTGTGGGGCTCCCCCTTGGGGGACTACCTGGAATGCTTCTGCCACTGGCCTTTGCAACCACTCTCACCAGGTTTGTCTTCAGTCTCCTACTCTACACAAAGGCTTTGGTAACACCTGCCTTAGCTCTGAATTCTGGGGGAAACTCAGgtgagtagggtcccaaccaggtctcaacaggtgagggtgtagaaaggatg Alignment from Pairagon GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtgtactgaccctgagctctcatgtgcttctctttcagGTTACCAGGCTGTGGTTCTATCAGCACTGTTAATGGGGCTGGGTGTATCTGTGGGGCTCCCCCTTGGGGGACTACCTGGAATGCTTCTGCCACTGGCCTTTGCAACCACTCTCACCAGGTTTGTCTTCAGTCTCCTACTCTACACAAAGGCTTTGGTAACACCTGCCTTAGCTCTGAATTCTGGGGGAAACTCAGgtgagtagggtcccaaccaggtctcaacaggtgagggtgtagaaaggatg Alignment from Exonerate_protein2genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtgtactgaccctgagctctcatgtgcttctctttcagGTTACCAGGCTGTGGTTCTATCAGCACTGTTAATGGGGCTGGGTGTATCTGTGGGGCTCCCCCTTGGGGGACTACCTGGAATGCTTCTGCCACTGGCCTTTGCAACCACTCTCACCAGGTTTGTCTTCAGTCTCCTACTCTACACAAAGGCTTTGGTAACACCTGCCTTAGCTCTGAATTCTGGGGGAAACTCAGgtgagtagggtcccaaccaggtctcaacaggtgagggtgtagaaaggatg Alignment from Exonerate_coding2genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtgtactgaccctgagctctcatgtgcttctctttcagGTTACCAGGCTGTGGTTCTATCAGCACTGTTAATGGGGCTGGGTGTATCTGTGGGGCTCCCCCTTGGGGGACTACCTGGAATGCTTCTGCCACTGGCCTTTGCAACCACTCTCACCAGGTTTGTCTTCAGTCTCCTACTCTACACAAAGGCTTTGGTAACACCTGCCTTAGCTCTGAATTCTGGGGGAAACTCAGgtgagtagggtcccaaccaggtctcaacaggtgagggtgtagaaaggatg Alignment from GeneWise GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtgtactgaccctgagctctcatgtgcttctctttcagGTTACCAGGCTGTGGTTCTATCAGCACTGTTAATGGGGCTGGGTGTATCTGTGGGGCTCCCCCTTGGGGGACTACCTGGAATGCTTCTGCCACTGGCCTTTGCAACCACTCTCACCAGGTTTGTCTTCAGTCTCCTACTCTACACAAAGGCTTTGGTAACACCTGCCTTAGCTCTGAATTCTGGGGGAAACTCAGgtgagtagggtcccaaccaggtctcaacaggtgagggtgtagaaaggatg #### Tm9sf3_ID8142_8 --> 1 - 1 Original Alignment gAGGGGGTCAATGCTCAGCACAGCCATATTTGTCTATGCTGCTACATCGCCAGTGAACGGGTACTTTGGAGGAAGTCTGTATGCTAGACAAGGAg ctggtcactaggtgcctggcttgagacaatctgctcttgcatctttgtaggAGGGGGTCAATGCTCAGTACAGCCATCTTCATCTACGCTGCCACAGCACCTGCAAATGGGTACTTTGGGGGAAGTCTGTATGCTAGGCAAGGTggtacttagtatagagaaagcaaatttgcatccgtacatacatctgggtgc Alignment from CESAR gAGGGGGTCAATGCTCAGCACAGCCATATTTGTCTATGCTGCTACATCGCCAGTGAACGGGTACTTTGGAGGAAGTCTGTATGCTAGACAAGGAg ctggtcactaggtgcctggcttgagacaatctgctcttgcatctttgtaggAGGGGGTCAATGCTCAGTACAGCCATCTTCATCTACGCTGCCACAGCACCTGCAAATGGGTACTTTGGGGGAAGTCTGTATGCTAGGCAAGGTggtacttagtatagagaaagcaaatttgcatccgtacatacatctgggtgc Alignment from Spaln_aa2Genome GAGGGGGTCAATGCTCAGCACAGCCATATTTGTCTATGCTGCTACATCGCCAGTGAACGGGTACTTTGGAGGAAGTCTGTATGCTAGACAAGGAG ctggtcactaggtgcctggcttgagacaatctgctcttgcatctttgtagGAGGGGGTCAATGCTCAGTACAGCCATCTTCATCTACGCTGCCACAGCACCTGCAAATGGGTACTTTGGGGGAAGTCTGTATGCTAGGCAAGGTGgtacttagtatagagaaagcaaatttgcatccgtacatacatctgggtgc Alignment from Spaln_nt2Genome GAGGGGGTCAATGCTCAGCACAGCCATATTTGTCTATGCTGCTACATCGCCAGTGAACGGGTACTTTGGAGGAAGTCTGTATGCTAGACAAGGAG ctggtcactaggtgcctggcttgagacaatctgctcttgcatctttgtagGAGGGGGTCAATGCTCAGTACAGCCATCTTCATCTACGCTGCCACAGCACCTGCAAATGGGTACTTTGGGGGAAGTCTGTATGCTAGGCAAGGTGgtacttagtatagagaaagcaaatttgcatccgtacatacatctgggtgc Alignment from Pairagon GAGGGGGTCAATGCTCAGCACAGCCATATTTGTCTATGCTGCTACATCGCCAGTGAACGGGTACTTTGGAGGAAGTCTGTATGCTAGACAAGGAG ctggtcactaggtgcctggcttgagacaatctgctcttgcatctttgtagGAGGGGGTCAATGCTCAGTACAGCCATCTTCATCTACGCTGCCACAGCACCTGCAAATGGGTACTTTGGGGGAAGTCTGTATGCTAGGCAAGGTGgtacttagtatagagaaagcaaatttgcatccgtacatacatctgggtgc Alignment from Exonerate_protein2genome GAGGGGGTCAATGCTCAGCACAGCCATATTTGTCTATGCTGCTACATCGCCAGTGAACGGGTACTTTGGAGGAAGTCTGTATGCTAGACAAGGAG ctggtcactaggtgcctggcttgagacaatctgctcttgcatctttgtagGAGGGGGTCAATGCTCAGTACAGCCATCTTCATCTACGCTGCCACAGCACCTGCAAATGGGTACTTTGGGGGAAGTCTGTATGCTAGGCAAGGTGgtacttagtatagagaaagcaaatttgcatccgtacatacatctgggtgc Alignment from Exonerate_coding2genome GAGGGGGTCAATGCTCAGCACAGCCATATTTGTCTATGCTGCTACATCGCCAGTGAACGGGTACTTTGGAGGAAGTCTGTATGCTAGACAAGGAG ctggtcactaggtgcctggcttgagacaatctgctcttgcatctttgtagGAGGGGGTCAATGCTCAGTACAGCCATCTTCATCTACGCTGCCACAGCACCTGCAAATGGGTACTTTGGGGGAAGTCTGTATGCTAGGCAAGGTGgtacttagtatagagaaagcaaatttgcatccgtacatacatctgggtgc Alignment from GeneWise GAGGGGGTCAATGCTCAGCACAGCCATATTTGTCTATGCTGCTACATCGCCAGTGAACGGGTACTTTGGAGGAAGTCTGTATGCTAGACAAGGAG ctggtcactaggtgcctggcttgagacaatctgctcttgcatctttgtagGAGGGGGTCAATGCTCAGTACAGCCATCTTCATCTACGCTGCCACAGCACCTGCAAATGGGTACTTTGGGGGAAGTCTGTATGCTAGGCAAGGTGgtacttagtatagagaaagcaaatttgcatccgtacatacatctgggtgc #### Tm9sf3_ID8146_4 --> 2 - 0 Original Alignment gtATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTACTATCTTTGGACCTACAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATTGTTGATGTTAATCTAACTAGTGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATATTCG accccattctaggtactcatacactgcagctgtttgtgttccttcctcaggcATTGTAGGTGAAGCAGATGAAAATGGGGAAGATTATTACCTTTGGACCTATAAAAAGCTTGAAGTAGGCTTTAATGGAAATAGAATGGTTGATGTTAATTTGATAAGTGAAGGGAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATACTCCgtgagatgtcaagtcaaagaggtggtattagcaaacatttgtaaatagat Alignment from CESAR gtATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTACTATCTTTGGACCTACAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATTGTTGATGTTAATCTAACTAGTGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATATTCG accccattctaggtactcatacactgcagctgtttgtgttccttcctcaggcATTGTAGGTGAAGCAGATGAAAATGGGGAAGATTATTACCTTTGGACCTATAAAAAGCTTGAAGTAGGCTTTAATGGAAATAGAATGGTTGATGTTAATTTGATAAGTGAAGGGAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATACTCCgtgagatgtcaagtcaaagaggtggtattagcaaacatttgtaaatagat Alignment from Spaln_aa2Genome GTATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTACTATCTTTGGACCTACAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATTGTTGATGTTAATCTAACTAGTGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATATTCG accccattctaggtactcatacactgcagctgtttgtgttccttcctcagGCATTGTAGGTGAAGCAGATGAAAATGGGGAAGATTATTACCTTTGGACCTATAAAAAGCTTGAAGTAGGCTTTAATGGAAATAGAATGGTTGATGTTAATTTGATAAGTGAAGGGAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATACTCCgtgagatgtcaagtcaaagaggtggtattagcaaacatttgtaaatagat Alignment from Spaln_nt2Genome GTATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTACTATCTTTGGACCTACAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATTGTTGATGTTAATCTAACTAGTGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATATTCG accccattctaggtactcatacactgcagctgtttgtgttccttcctcagGCATTGTAGGTGAAGCAGATGAAAATGGGGAAGATTATTACCTTTGGACCTATAAAAAGCTTGAAGTAGGCTTTAATGGAAATAGAATGGTTGATGTTAATTTGATAAGTGAAGGGAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATACTCCgtgagatgtcaagtcaaagaggtggtattagcaaacatttgtaaatagat Alignment from Pairagon GTATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTACTATCTTTGGACCTACAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATTGTTGATGTTAATCTAACTAGTGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATATTCG accccattctaggtactcatacactgcagctgtttgtgttccttcctcagGCATTGTAGGTGAAGCAGATGAAAATGGGGAAGATTATTACCTTTGGACCTATAAAAAGCTTGAAGTAGGCTTTAATGGAAATAGAATGGTTGATGTTAATTTGATAAGTGAAGGGAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATACTCCgtgagatgtcaagtcaaagaggtggtattagcaaacatttgtaaatagat Alignment from Exonerate_protein2genome GTATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTACTATCTTTGGACCTACAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATTGTTGATGTTAATCTAACTAGTGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATATTCG accccattctaggtactcatacactgcagctgtttgtgttccttcctcagGCATTGTAGGTGAAGCAGATGAAAATGGGGAAGATTATTACCTTTGGACCTATAAAAAGCTTGAAGTAGGCTTTAATGGAAATAGAATGGTTGATGTTAATTTGATAAGTGAAGGGAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATACTCCgtgagatgtcaagtcaaagaggtggtattagcaaacatttgtaaatagat Alignment from Exonerate_coding2genome GTATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTACTATCTTTGGACCTACAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATTGTTGATGTTAATCTAACTAGTGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATATTCG accccattctaggtactcatacactgcagctgtttgtgttccttcctcagGCATTGTAGGTGAAGCAGATGAAAATGGGGAAGATTATTACCTTTGGACCTATAAAAAGCTTGAAGTAGGCTTTAATGGAAATAGAATGGTTGATGTTAATTTGATAAGTGAAGGGAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATACTCCgtgagatgtcaagtcaaagaggtggtattagcaaacatttgtaaatagat Alignment from GeneWise GTATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTACTATCTTTGGACCTACAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATTGTTGATGTTAATCTAACTAGTGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATATTCG accccattctaggtactcatacactgcagctgtttgtgttccttcctcagGCATTGTAGGTGAAGCAGATGAAAATGGGGAAGATTATTACCTTTGGACCTATAAAAAGCTTGAAGTAGGCTTTAATGGAAATAGAATGGTTGATGTTAATTTGATAAGTGAAGGGAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATACTCCgtgagatgtcaagtcaaagaggtggtattagcaaacatttgtaaatagat #### Tmc1_ID4822_19 --> 0 - 1 Original Alignment CAAGCTTTGGAGAACAAAATGCGAAACAAGAAAATGGCAGCGGCTCGAGCAg acacctgggcttaatgggccctaccctcctgagcatcttaacctttgtagCAGGCCTTGGAGAACAAAATGCGAAACAAGAAAATGGCTGCAGCAAGAGCAcgtaactgatgttacatcttacactaaaaactctcaataaatgaggtgcca Alignment from CESAR CAAGCTTTGGAGAACAAAATGCGAAACAAGAAAATGGCAGCGGCTCGAGCAg acacctgggcttaatgggccctaccctcctgagcatcttaacctttgtagCAGGCCTTGGAGAACAAAATGCGAAACAAGAAAATGGCTGCAGCAAGAGCAcgtaactgatgttacatcttacactaaaaactctcaataaatgaggtgcca Alignment from Spaln_aa2Genome CAAGCTTTGGAGAACAAAATGCGAAACAAGAAAATGGCAGCGGCTCGAGCAG acacctgggcttaatgggccctaccctcctgagcatcttaacctttgtagCAGGCCTTGGAGAACAAAATGCGAAACAAGAAAATGGCTGCAGCAAGAGCACgtaactgatgttacatcttacactaaaaactctcaataaatgaggtgcca Alignment from Spaln_nt2Genome CAAGCTTTGGAGAACAAAATGCGAAACAAGAAAATGGCAGCGGCTCGAGCAG acacctgggcttaatgggccctaccctcctgagcatcttaacctttgtagCAGGCCTTGGAGAACAAAATGCGAAACAAGAAAATGGCTGCAGCAAGAGCACgtaactgatgttacatcttacactaaaaactctcaataaatgaggtgcca Alignment from Pairagon CAAGCTTTGGAGAACAAAATGCGAAACAAGAAAATGGCAGCGGCTCGAGCAG acacctgggcttaatgggccctaccctcctgagcatcttaacctttgtagCAGGCCTTGGAGAACAAAATGCGAAACAAGAAAATGGCTGCAGCAAGAGCACgtaactgatgttacatcttacactaaaaactctcaataaatgaggtgcca Alignment from Exonerate_protein2genome CAAGCTTTGGAGAACAAAATGCGAAACAAGAAAATGGCAGCGGCTCGAGCAG acacctgggcttaatgggccctaccctcctgagcatcttaacctttgtagCAGGCCTTGGAGAACAAAATGCGAAACAAGAAAATGGCTGCAGCAAGAGCACgtaactgatgttacatcttacactaaaaactctcaataaatgaggtgcca Alignment from Exonerate_coding2genome CAAGCTTTGGAGAACAAAATGCGAAACAAGAAAATGGCAGCGGCTCGAGCA acacctgggcttaatgggccctaccctcctgagcatcttaacctttgtagCAGGCCTTGGAGAACAAAATGCGAAACAAGAAAATGGCTGCAGCAAGAGCAcgtaactgatgttacatcttacactaaaaactctcaataaatgaggtgcca Alignment from GeneWise CAAGCTTTGGAGAACAAAATGCGAAACAAGAAAATGGCAGCGGCTCGAGCA acacctgggcttaatgggccctaccctcctgagcatcttaacctttgtagCAGGCCTTGGAGAACAAAATGCGAAACAAGAAAATGGCTGCAGCAAGAGCAcgtaactgatgttacatcttacactaaaaactctcaataaatgaggtgcca #### Tmc1_ID4835_8 --> 0 - 0 Original Alignment TACCTCTGGGGTTTACCGTACGGCAGCTTACCTAGGAAAACAGTCCCAAGAGCTGAAGAAGCATCTGCAGCCAACTTTGGTGTGTTGTATGACTTCAAT cacctgcagccttcaggtgttgatagctttcgactttggctcctttgcagTACTTGTGGGGTCTCCCATATGGCAGCTCACCTAGAAAAACAGTCCCAAGAGCTGAGGAAGCTTCTGCCCCTAACTTTGGTGTGTTATATGATTTCAATgtaagtctgctagactgcccttcttaatgaacctgttgcgggtcaagaag Alignment from CESAR TACCTCTGGGGTTTACCGTACGGCAGCTTACCTAGGAAAACAGTCCCAAGAGCTGAAGAAGCATCTGCAGCCAACTTTGGTGTGTTGTATGACTTCAAT cacctgcagccttcaggtgttgatagctttcgactttggctcctttgcagTACTTGTGGGGTCTCCCATATGGCAGCTCACCTAGAAAAACAGTCCCAAGAGCTGAGGAAGCTTCTGCCCCTAACTTTGGTGTGTTATATGATTTCAATgtaagtctgctagactgcccttcttaatgaacctgttgcgggtcaagaag Alignment from Spaln_aa2Genome TACCTCTGGGGTTTACCGTACGGCAGCTTACCTAGGAAAACAGTCCCAAGAGCTGAAGAAGCATCTGCAGCCAACTTTGGTGTGTTGTATGACTTCAAT cacctgcagccttcaggtgttgatagctttcgactttggctcctttgcagTACTTGTGGGGTCTCCCATATGGCAGCTCACCTAGAAAAACAGTCCCAAGAGCTGAGGAAGCTTCTGCCCCTAACTTTGGTGTGTTATATGATTTCAATgtaagtctgctagactgcccttcttaatgaacctgttgcgggtcaagaag Alignment from Spaln_nt2Genome TACCTCTGGGGTTTACCGTACGGCAGCTTACCTAGGAAAACAGTCCCAAGAGCTGAAGAAGCATCTGCAGCCAACTTTGGTGTGTTGTATGACTTCAAT cacctgcagccttcaggtgttgatagctttcgactttggctcctttgcagTACTTGTGGGGTCTCCCATATGGCAGCTCACCTAGAAAAACAGTCCCAAGAGCTGAGGAAGCTTCTGCCCCTAACTTTGGTGTGTTATATGATTTCAATgtaagtctgctagactgcccttcttaatgaacctgttgcgggtcaagaag Alignment from Pairagon TACCTCTGGGGTTTACCGTACGGCAGCTTACCTAGGAAAACAGTCCCAAGAGCTGAAGAAGCATCTGCAGCCAACTTTGGTGTGTTGTATGACTTCAAT cacctgcagccttcaggtgttgatagctttcgactttggctcctttgcagTACTTGTGGGGTCTCCCATATGGCAGCTCACCTAGAAAAACAGTCCCAAGAGCTGAGGAAGCTTCTGCCCCTAACTTTGGTGTGTTATATGATTTCAATgtaagtctgctagactgcccttcttaatgaacctgttgcgggtcaagaag Alignment from Exonerate_protein2genome TACCTCTGGGGTTTACCGTACGGCAGCTTACCTAGGAAAACAGTCCCAAGAGCTGAAGAAGCATCTGCAGCCAACTTTGGTGTGTTGTATGACTTCAAT cacctgcagccttcaggtgttgatagctttcgactttggctcctttgcagTACTTGTGGGGTCTCCCATATGGCAGCTCACCTAGAAAAACAGTCCCAAGAGCTGAGGAAGCTTCTGCCCCTAACTTTGGTGTGTTATATGATTTCAATgtaagtctgctagactgcccttcttaatgaacctgttgcgggtcaagaag Alignment from Exonerate_coding2genome TACCTCTGGGGTTTACCGTACGGCAGCTTACCTAGGAAAACAGTCCCAAGAGCTGAAGAAGCATCTGCAGCCAACTTTGGTGTGTTGTATGACTTCAAT cacctgcagccttcaggtgttgatagctttcgactttggctcctttgcagTACTTGTGGGGTCTCCCATATGGCAGCTCACCTAGAAAAACAGTCCCAAGAGCTGAGGAAGCTTCTGCCCCTAACTTTGGTGTGTTATATGATTTCAATgtaagtctgctagactgcccttcttaatgaacctgttgcgggtcaagaag Alignment from GeneWise TACCTCTGGGGTTTACCGTACGGCAGCTTACCTAGGAAAACAGTCCCAAGAGCTGAAGAAGCATCTGCAGCCAACTTTGGTGTGTTGTATGACTTCAAT cacctgcagccttcaggtgttgatagctttcgactttggctcctttgcagTACTTGTGGGGTCTCCCATATGGCAGCTCACCTAGAAAAACAGTCCCAAGAGCTGAGGAAGCTTCTGCCCCTAACTTTGGTGTGTTATATGATTTCAATgtaagtctgctagactgcccttcttaatgaacctgttgcgggtcaagaag #### Tmem109_ID3037_2 --> 0 - 1 Original Alignment ACCCTGTTGCAGGTGATGTGGGCCATCTCATCAGCCATCTCTGTGGCCTGCTTTGCCCTGTCTGGGATTGCTGCCCAGTTGCTGAGTGCCCTGGGGCTGGATg ccagagacctgagggagaaccttgtatacagcatctcctcttcttcccagACACTGCTACAGGTGATGTGGGCTATCTCCTCAGCCATTTCTGTGGCCTGCTTTGTCCTGTCTGGGATTGCTGCCCAGTTGCTTAGTGCACTGGGGCTGGATggtgagttcgcagtaatgcgactgtactaaaagggcttcagtcagggctat Alignment from CESAR ACCCTGTTGCAGGTGATGTGGGCCATCTCATCAGCCATCTCTGTGGCCTGCTTTGCCCTGTCTGGGATTGCTGCCCAGTTGCTGAGTGCCCTGGGGCTGGATg ccagagacctgagggagaaccttgtatacagcatctcctcttcttcccagACACTGCTACAGGTGATGTGGGCTATCTCCTCAGCCATTTCTGTGGCCTGCTTTGTCCTGTCTGGGATTGCTGCCCAGTTGCTTAGTGCACTGGGGCTGGATggtgagttcgcagtaatgcgactgtactaaaagggcttcagtcagggctat Alignment from Spaln_aa2Genome ACCCTGTTGCAGGTGATGTGGGCCATCTCATCAGCCATCTCTGTGGCCTGCTTTGCCCTGTCTGGGATTGCTGCCCAGTTGCTGAGTGCCCTGGGGCTGGATG ccagagacctgagggagaaccttgtatacagcatctcctcttcttcccagACACTGCTACAGGTGATGTGGGCTATCTCCTCAGCCATTTCTGTGGCCTGCTTTGTCCTGTCTGGGATTGCTGCCCAGTTGCTTAGTGCACTGGGGCTGGATGgtgagttcgcagtaatgcgactgtactaaaagggcttcagtcagggctat Alignment from Spaln_nt2Genome ACCCTGTTGCAGGTGATGTGGGCCATCTCATCAGCCATCTCTGTGGCCTGCTTTGCCCTGTCTGGGATTGCTGCCCAGTTGCTGAGTGCCCTGGGGCTGGATG ccagagacctgagggagaaccttgtatacagcatctcctcttcttcccagACACTGCTACAGGTGATGTGGGCTATCTCCTCAGCCATTTCTGTGGCCTGCTTTGTCCTGTCTGGGATTGCTGCCCAGTTGCTTAGTGCACTGGGGCTGGATGgtgagttcgcagtaatgcgactgtactaaaagggcttcagtcagggctat Alignment from Pairagon ACCCTGTTGCAGGTGATGTGGGCCATCTCATCAGCCATCTCTGTGGCCTGCTTTGCCCTGTCTGGGATTGCTGCCCAGTTGCTGAGTGCCCTGGGGCTGGATG ccagagacctgagggagaaccttgtatacagcatctcctcttcttcccagACACTGCTACAGGTGATGTGGGCTATCTCCTCAGCCATTTCTGTGGCCTGCTTTGTCCTGTCTGGGATTGCTGCCCAGTTGCTTAGTGCACTGGGGCTGGATGgtgagttcgcagtaatgcgactgtactaaaagggcttcagtcagggctat Alignment from Exonerate_protein2genome ACCCTGTTGCAGGTGATGTGGGCCATCTCATCAGCCATCTCTGTGGCCTGCTTTGCCCTGTCTGGGATTGCTGCCCAGTTGCTGAGTGCCCTGGGGCTGGATG ccagagacctgagggagaaccttgtatacagcatctcctcttcttcccagACACTGCTACAGGTGATGTGGGCTATCTCCTCAGCCATTTCTGTGGCCTGCTTTGTCCTGTCTGGGATTGCTGCCCAGTTGCTTAGTGCACTGGGGCTGGATGgtgagttcgcagtaatgcgactgtactaaaagggcttcagtcagggctat Alignment from Exonerate_coding2genome ACCCTGTTGCAGGTGATGTGGGCCATCTCATCAGCCATCTCTGTGGCCTGCTTTGCCCTGTCTGGGATTGCTGCCCAGTTGCTGAGTGCCCTGGGGCTGGATG ccagagacctgagggagaaccttgtatacagcatctcctcttcttcccagACACTGCTACAGGTGATGTGGGCTATCTCCTCAGCCATTTCTGTGGCCTGCTTTGTCCTGTCTGGGATTGCTGCCCAGTTGCTTAGTGCACTGGGGCTGGATGgtgagttcgcagtaatgcgactgtactaaaagggcttcagtcagggctat Alignment from GeneWise ACCCTGTTGCAGGTGATGTGGGCCATCTCATCAGCCATCTCTGTGGCCTGCTTTGCCCTGTCTGGGATTGCTGCCCAGTTGCTGAGTGCCCTGGGGCTGGATG ccagagacctgagggagaaccttgtatacagcatctcctcttcttcccagACACTGCTACAGGTGATGTGGGCTATCTCCTCAGCCATTTCTGTGGCCTGCTTTGTCCTGTCTGGGATTGCTGCCCAGTTGCTTAGTGCACTGGGGCTGGATGgtgagttcgcagtaatgcgactgtactaaaagggcttcagtcagggctat #### Tmem179b_ID2371_2 --> 0 - 2 Original Alignment GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACag gtctgataagcagacccatcagtctaccccctcactttgttccctgtcagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCCGTTGCACTCAATGGCTCCTCACTAGCTTTGCTAAGTCCAGCAGCCCCTTCCCTCTGCTACTTTGTCGCTGGGGGTTCAGGAATCTTGGTTCTCTACTGCCTTCTGTTTCTGTTTTTCTGGGTCTACAGTAGCTGTATA---GATTCCCACaggtaagacccctcgtggaatgagagatacctgggggggattatcaatattt Alignment from CESAR GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACag gtctgataagcagacccatcagtctaccccctcactttgttccctgtcagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCCGTTGCACTCAATGGCTCCTCACTAGCTTTGCTAAGTCCAGCAGCCCCTTCCCTCTGCTACTTTGTCGCTGGGGGTTCAGGAATCTTGGTTCTCTACTGCCTTCTGTTTCTGTTTTTCTGGGTCTACAGTAGCTGTATA---GATTCCCACaggtaagacccctcgtggaatgagagatacctgggggggattatcaatattt Alignment from Spaln_aa2Genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG gtctgataagcagacccatcagtctaccccctcactttgttccctgtcagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCCGTTGCACTCAATGGCTCCTCACTAGCTTTGCTAAGTCCAGCAGCCCCTTCCCTCTGCTACTTTGTCGCTGGGGGTTCAGGAATCTTGGTTCTCTACTGCCTTCTGTTTCTGTTTTTCTGGGTCTACAGTAGCTGTATA---GATTCCCACAGgtaagacccctcgtggaatgagagatacctgggggggattatcaatattt Alignment from Spaln_nt2Genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG gtctgataagcagacccatcagtctaccccctcactttgttccctgtcagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCCGTTGCACTCAATGGCTCCTCACTAGCTTTGCTAAGTCCAGCAGCCCCTTCCCTCTGCTACTTTGTCGCTGGGGGTTCAGGAATCTTGGTTCTCTACTGCCTTCTGTTTCTGTTTTTCTGGGTCTACAGTAGCTGTAT---AGATTCCCACAGgtaagacccctcgtggaatgagagatacctgggggggattatcaatattt Alignment from Pairagon GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG gtctgataagcagacccatcagtctaccccctcactttgttccctgtcagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCCGTTGCACTCAATGGCTCCTCACTAGCTTTGCTAAGTCCAGCAGCCCCTTCCCTCTGCTACTTTGTCGCTGGGGGTTCAGGAATCTTGGTTCTCTACTGCCTTCTGTTTCTGTTTTTCTGGGTCTACAGTAGCTGTAT---AGATTCCCACAGgtaagacccctcgtggaatgagagatacctgggggggattatcaatattt Alignment from Exonerate_protein2genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG gtctgataagcagacccatcagtctaccccctcactttgttccctgtcagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCCGTTGCACTCAATGGCTCCTCACTAGCTTTGCTAAGTCCAGCAGCCCCTTCCCTCTGCTACTTTGTCGCTGGGGGTTCAGGAATCTTGGTTCTCTACTGCCTTCTGTTTCTGTTTTTCTGGGTCTACAGTAGCTGTATA---GATTCCCACAGgtaagacccctcgtggaatgagagatacctgggggggattatcaatattt Alignment from Exonerate_coding2genome CAGGGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG gtctgataagcagacccatcagtctaccccctcactttgttccctgtCAGGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCCGTTGCACTCAATGGCTCCTCACTAGCTTTGCTAAGTCCAGCAGCCCCTTCCCTCTGCTACTTTGTCGCTGGGGGTTCAGGAATCTTGGTTCTCTACTGCCTTCTGTTTCTGTTTTTCTGGGTCTACAGTAGCTGTATA---GATTCCCACAGgtaagacccctcgtggaatgagagatacctgggggggattatcaatattt Alignment from GeneWise GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG gtctgataagcagacccatcagtctaccccctcactttgttccctgtcagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCCGTTGCACTCAATGGCTCCTCACTAGCTTTGCTAAGTCCAGCAGCCCCTTCCCTCTGCTACTTTGTCGCTGGGGGTTCAGGAATCTTGGTTCTCTACTGCCTTCTGTTTCTGTTTTTCTGGGTCTACAGTAGCTGTATA---GATTCCCACAGgtaagacccctcgtggaatgagagatacctgggggggattatcaatattt #### Tmem258_ID2706_2 --> 0 - 2 Original Alignment GAGCTCGAAGCCATGAGTAGGTACACCAGCCCAGTGAACCCGGCTGTCTTCCCTCACCTGACTGTGGTACTTCTGGCCATCGGCATGTTCTTCACTGCCTGGTTCTTCgt tgcatgtagtcttcctttttttaaatcgttccttgtctcttcatttccagGAGCTGGAAGCAATGAGTAGGTATACCAGTCCAGTGAACCTGGCTGTCTTCCCTCACCTGACTGTGTTACTGCTTGCCATTGGCATGTTCTTCACTGCCTGGTTCTTTgtgtagggtttataagatagcataagtcttcttttaggacttatttgccagt Alignment from CESAR GAGCTCGAAGCCATGAGTAGGTACACCAGCCCAGTGAACCCGGCTGTCTTCCCTCACCTGACTGTGGTACTTCTGGCCATCGGCATGTTCTTCACTGCCTGGTTCTTCgt tgcatgtagtcttcctttttttaaatcgttccttgtctcttcatttccagGAGCTGGAAGCAATGAGTAGGTATACCAGTCCAGTGAACCTGGCTGTCTTCCCTCACCTGACTGTGTTACTGCTTGCCATTGGCATGTTCTTCACTGCCTGGTTCTTTgtgtagggtttataagatagcataagtcttcttttaggacttatttgccagt Alignment from Spaln_aa2Genome GAGCTCGAAGCCATGAGTAGGTACACCAGCCCAGTGAACCCGGCTGTCTTCCCTCACCTGACTGTGGTACTTCTGGCCATCGGCATGTTCTTCACTGCCTGGTTCTTCGT tgcatgtagtcttcctttttttaaatcgttccttgtctcttcatttccagGAGCTGGAAGCAATGAGTAGGTATACCAGTCCAGTGAACCTGGCTGTCTTCCCTCACCTGACTGTGTTACTGCTTGCCATTGGCATGTTCTTCACTGCCTGGTTCTTTGTgtagggtttataagatagcataagtcttcttttaggacttatttgccagt Alignment from Spaln_nt2Genome GAGCTCGAAGCCATGAGTAGGTACACCAGCCCAGTGAACCCGGCTGTCTTCCCTCACCTGACTGTGGTACTTCTGGCCATCGGCATGTTCTTCACTGCCTGGTTCTTCGT tgcatgtagtcttcctttttttaaatcgttccttgtctcttcatttccagGAGCTGGAAGCAATGAGTAGGTATACCAGTCCAGTGAACCTGGCTGTCTTCCCTCACCTGACTGTGTTACTGCTTGCCATTGGCATGTTCTTCACTGCCTGGTTCTTTGTgtagggtttataagatagcataagtcttcttttaggacttatttgccagt Alignment from Pairagon GAGCTCGAAGCCATGAGTAGGTACACCAGCCCAGTGAACCCGGCTGTCTTCCCTCACCTGACTGTGGTACTTCTGGCCATCGGCATGTTCTTCACTGCCTGGTTCTTCGT tgcatgtagtcttcctttttttaaatcgttccttgtctcttcatttccagGAGCTGGAAGCAATGAGTAGGTATACCAGTCCAGTGAACCTGGCTGTCTTCCCTCACCTGACTGTGTTACTGCTTGCCATTGGCATGTTCTTCACTGCCTGGTTCTTTGTgtagggtttataagatagcataagtcttcttttaggacttatttgccagt Alignment from Exonerate_protein2genome ATGGAGCTCGAAGCCATGAGTAGGTACACCAGCCCAGTGAACCCGGCTGTCTTCCCTCACCTGACTGTGGTACTTCTGGCCATCGGCATGTTCTTCACTGCCTGGTTCTTCGT tgcatgtagtcttcctttttttaaatcgttccttgtctcttcatttcCAGGAGCTGGAAGCAATGAGTAGGTATACCAGTCCAGTGAACCTGGCTGTCTTCCCTCACCTGACTGTGTTACTGCTTGCCATTGGCATGTTCTTCACTGCCTGGTTCTTTGTgtagggtttataagatagcataagtcttcttttaggacttatttgccagt Alignment from Exonerate_coding2genome ATGGAGCTCGAAGCCATGAGTAGGTACACCAGCCCAGTGAACCCGGCTGTCTTCCCTCACCTGACTGTGGTACTTCTGGCCATCGGCATGTTCTTCACTGCCTGGTTCTTCGT tgcatgtagtcttcctttttttaaatcgttccttgtctcttcatttcCAGGAGCTGGAAGCAATGAGTAGGTATACCAGTCCAGTGAACCTGGCTGTCTTCCCTCACCTGACTGTGTTACTGCTTGCCATTGGCATGTTCTTCACTGCCTGGTTCTTTGTgtagggtttataagatagcataagtcttcttttaggacttatttgccagt Alignment from GeneWise ATGGAGCTCGAAGCCATGAGTAGGTACACCAGCCCAGTGAACCCGGCTGTCTTCCCTCACCTGACTGTGGTACTTCTGGCCATCGGCATGTTCTTCACTGCCTGGTTCTTCGT tgcatgtagtcttcctttttttaaatcgttccttgtctcttcatttcCAGGAGCTGGAAGCAATGAGTAGGTATACCAGTCCAGTGAACCTGGCTGTCTTCCCTCACCTGACTGTGTTACTGCTTGCCATTGGCATGTTCTTCACTGCCTGGTTCTTTGTgtagggtttataagatagcataagtcttcttttaggacttatttgccagt #### Tmem2_ID4942_4 --> 1 - 1 Original Alignment gCAAGCTTGGGCCTTAGTTGGTGTCATCGATGGTGGAAGTTCTTCCTGCAATGAATCTGTGAGAAACTATGAAAACCATAGCACTGGGGGGAAGGCCCTGGCTCAAGGAGAATTCTACACCCTGGACGGTCAGAAGTTCTCTGTGACAGCCTACAGTGAATGGAGTCAAg gtcaatgtggtgatagatgctcagcaactgtggtacgtattggtttctaggCAGGCCTGGGCCTTAGTAGGTGTCATTGATGGTGGAAGCTCTACATGCAATGAGTCAGTGAGAAACTATGAAAACCATAGCACTAGAGGGAAGGCACTGGCACAAGGTGAATTTTACACTCTAGGTGGTCAAAAGTTCTCTGTGACAGCCTACACTGAATGGAGCCAAggtggggcaggttggagccctgtataggccccaggttgtctgtttgggtgc Alignment from CESAR gCAAGCTTGGGCCTTAGTTGGTGTCATCGATGGTGGAAGTTCTTCCTGCAATGAATCTGTGAGAAACTATGAAAACCATAGCACTGGGGGGAAGGCCCTGGCTCAAGGAGAATTCTACACCCTGGACGGTCAGAAGTTCTCTGTGACAGCCTACAGTGAATGGAGTCAAg gtcaatgtggtgatagatgctcagcaactgtggtacgtattggtttctaggCAGGCCTGGGCCTTAGTAGGTGTCATTGATGGTGGAAGCTCTACATGCAATGAGTCAGTGAGAAACTATGAAAACCATAGCACTAGAGGGAAGGCACTGGCACAAGGTGAATTTTACACTCTAGGTGGTCAAAAGTTCTCTGTGACAGCCTACACTGAATGGAGCCAAggtggggcaggttggagccctgtataggccccaggttgtctgtttgggtgc Alignment from Spaln_aa2Genome GCAAGCTTGGGCCTTAGTTGGTGTCATCGATGGTGGAAGTTCTTCCTGCAATGAATCTGTGAGAAACTATGAAAACCATAGCACTGGGGGGAAGGCCCTGGCTCAAGGAGAATTCTACACCCTGGACGGTCAGAAGTTCTCTGTGACAGCCTACAGTGAATGGAGTCAAG gtcaatgtggtgatagatgctcagcaactgtggtacgtattggtttctagGCAGGCCTGGGCCTTAGTAGGTGTCATTGATGGTGGAAGCTCTACATGCAATGAGTCAGTGAGAAACTATGAAAACCATAGCACTAGAGGGAAGGCACTGGCACAAGGTGAATTTTACACTCTAGGTGGTCAAAAGTTCTCTGTGACAGCCTACACTGAATGGAGCCAAGgtggggcaggttggagccctgtataggccccaggttgtctgtttgggtgc Alignment from Spaln_nt2Genome GCAAGCTTGGGCCTTAGTTGGTGTCATCGATGGTGGAAGTTCTTCCTGCAATGAATCTGTGAGAAACTATGAAAACCATAGCACTGGGGGGAAGGCCCTGGCTCAAGGAGAATTCTACACCCTGGACGGTCAGAAGTTCTCTGTGACAGCCTACAGTGAATGGAGTCAAG gtcaatgtggtgatagatgctcagcaactgtggtacgtattggtttctagGCAGGCCTGGGCCTTAGTAGGTGTCATTGATGGTGGAAGCTCTACATGCAATGAGTCAGTGAGAAACTATGAAAACCATAGCACTAGAGGGAAGGCACTGGCACAAGGTGAATTTTACACTCTAGGTGGTCAAAAGTTCTCTGTGACAGCCTACACTGAATGGAGCCAAGgtggggcaggttggagccctgtataggccccaggttgtctgtttgggtgc Alignment from Pairagon GCAAGCTTGGGCCTTAGTTGGTGTCATCGATGGTGGAAGTTCTTCCTGCAATGAATCTGTGAGAAACTATGAAAACCATAGCACTGGGGGGAAGGCCCTGGCTCAAGGAGAATTCTACACCCTGGACGGTCAGAAGTTCTCTGTGACAGCCTACAGTGAATGGAGTCAAG gtcaatgtggtgatagatgctcagcaactgtggtacgtattggtttctagGCAGGCCTGGGCCTTAGTAGGTGTCATTGATGGTGGAAGCTCTACATGCAATGAGTCAGTGAGAAACTATGAAAACCATAGCACTAGAGGGAAGGCACTGGCACAAGGTGAATTTTACACTCTAGGTGGTCAAAAGTTCTCTGTGACAGCCTACACTGAATGGAGCCAAGgtggggcaggttggagccctgtataggccccaggttgtctgtttgggtgc Alignment from Exonerate_protein2genome GCAAGCTTGGGCCTTAGTTGGTGTCATCGATGGTGGAAGTTCTTCCTGCAATGAATCTGTGAGAAACTATGAAAACCATAGCACTGGGGGGAAGGCCCTGGCTCAAGGAGAATTCTACACCCTGGACGGTCAGAAGTTCTCTGTGACAGCCTACAGTGAATGGAGTCAAG gtcaatgtggtgatagatgctcagcaactgtggtacgtattggtttctagGCAGGCCTGGGCCTTAGTAGGTGTCATTGATGGTGGAAGCTCTACATGCAATGAGTCAGTGAGAAACTATGAAAACCATAGCACTAGAGGGAAGGCACTGGCACAAGGTGAATTTTACACTCTAGGTGGTCAAAAGTTCTCTGTGACAGCCTACACTGAATGGAGCCAAGgtggggcaggttggagccctgtataggccccaggttgtctgtttgggtgc Alignment from Exonerate_coding2genome GCAAGCTTGGGCCTTAGTTGGTGTCATCGATGGTGGAAGTTCTTCCTGCAATGAATCTGTGAGAAACTATGAAAACCATAGCACTGGGGGGAAGGCCCTGGCTCAAGGAGAATTCTACACCCTGGACGGTCAGAAGTTCTCTGTGACAGCCTACAGTGAATGGAGTCAAG gtcaatgtggtgatagatgctcagcaactgtggtacgtattggtttctagGCAGGCCTGGGCCTTAGTAGGTGTCATTGATGGTGGAAGCTCTACATGCAATGAGTCAGTGAGAAACTATGAAAACCATAGCACTAGAGGGAAGGCACTGGCACAAGGTGAATTTTACACTCTAGGTGGTCAAAAGTTCTCTGTGACAGCCTACACTGAATGGAGCCAAGgtggggcaggttggagccctgtataggccccaggttgtctgtttgggtgc Alignment from GeneWise GCAAGCTTGGGCCTTAGTTGGTGTCATCGATGGTGGAAGTTCTTCCTGCAATGAATCTGTGAGAAACTATGAAAACCATAGCACTGGGGGGAAGGCCCTGGCTCAAGGAGAATTCTACACCCTGGACGGTCAGAAGTTCTCTGTGACAGCCTACAGTGAATGGAGTCAAG gtcaatgtggtgatagatgctcagcaactgtggtacgtattggtttctagGCAGGCCTGGGCCTTAGTAGGTGTCATTGATGGTGGAAGCTCTACATGCAATGAGTCAGTGAGAAACTATGAAAACCATAGCACTAGAGGGAAGGCACTGGCACAAGGTGAATTTTACACTCTAGGTGGTCAAAAGTTCTCTGTGACAGCCTACACTGAATGGAGCCAAGgtggggcaggttggagccctgtataggccccaggttgtctgtttgggtgc #### Tmem2_ID4944_6 --> 2 - 0 Original Alignment agATCCCCCAGTACCTGCACGTCGGTGAGATCATAGACGGGATAGACATGAGAGCTGAGGTTGGACTTCTCACCCGCAACATTGTGATCCAAGGAGAGATGGAGGATTCATGCTATGCAGAAAATCACTGCCAGTTCTTCGATTATGACACCTTTGGGGGACACGTCATG aacaccctttggtatggagccacccatggataccactttctctttttcagaaATCCCACAATACCTGCATGTTGGTGAGATCATAGATGAGTTAGACATGAAAGCAGAGGTTGGGCTCCTTACTCGCAACATTGTGATCCAGGGAGAGATGGAGGATTCATGCTATGCAGAAAACCACTGCCAATTCTTTGATTATGATACATTTGGGGGACATGTAATGgtgagcgggtgcgaactattgatggtgagagataggagtttcatgtgtgt Alignment from CESAR agATCCCCCAGTACCTGCACGTCGGTGAGATCATAGACGGGATAGACATGAGAGCTGAGGTTGGACTTCTCACCCGCAACATTGTGATCCAAGGAGAGATGGAGGATTCATGCTATGCAGAAAATCACTGCCAGTTCTTCGATTATGACACCTTTGGGGGACACGTCATG aacaccctttggtatggagccacccatggataccactttctctttttcagaaATCCCACAATACCTGCATGTTGGTGAGATCATAGATGAGTTAGACATGAAAGCAGAGGTTGGGCTCCTTACTCGCAACATTGTGATCCAGGGAGAGATGGAGGATTCATGCTATGCAGAAAACCACTGCCAATTCTTTGATTATGATACATTTGGGGGACATGTAATGgtgagcgggtgcgaactattgatggtgagagataggagtttcatgtgtgt Alignment from Spaln_aa2Genome AGATCCCCCAGTACCTGCACGTCGGTGAGATCATAGACGGGATAGACATGAGAGCTGAGGTTGGACTTCTCACCCGCAACATTGTGATCCAAGGAGAGATGGAGGATTCATGCTATGCAGAAAATCACTGCCAGTTCTTCGATTATGACACCTTTGGGGGACACGTCATG aacaccctttggtatggagccacccatggataccactttctctttttcagAAATCCCACAATACCTGCATGTTGGTGAGATCATAGATGAGTTAGACATGAAAGCAGAGGTTGGGCTCCTTACTCGCAACATTGTGATCCAGGGAGAGATGGAGGATTCATGCTATGCAGAAAACCACTGCCAATTCTTTGATTATGATACATTTGGGGGACATGTAATGgtgagcgggtgcgaactattgatggtgagagataggagtttcatgtgtgt Alignment from Spaln_nt2Genome AGATCCCCCAGTACCTGCACGTCGGTGAGATCATAGACGGGATAGACATGAGAGCTGAGGTTGGACTTCTCACCCGCAACATTGTGATCCAAGGAGAGATGGAGGATTCATGCTATGCAGAAAATCACTGCCAGTTCTTCGATTATGACACCTTTGGGGGACACGTCATG aacaccctttggtatggagccacccatggataccactttctctttttcagAAATCCCACAATACCTGCATGTTGGTGAGATCATAGATGAGTTAGACATGAAAGCAGAGGTTGGGCTCCTTACTCGCAACATTGTGATCCAGGGAGAGATGGAGGATTCATGCTATGCAGAAAACCACTGCCAATTCTTTGATTATGATACATTTGGGGGACATGTAATGgtgagcgggtgcgaactattgatggtgagagataggagtttcatgtgtgt Alignment from Pairagon AGATCCCCCAGTACCTGCACGTCGGTGAGATCATAGACGGGATAGACATGAGAGCTGAGGTTGGACTTCTCACCCGCAACATTGTGATCCAAGGAGAGATGGAGGATTCATGCTATGCAGAAAATCACTGCCAGTTCTTCGATTATGACACCTTTGGGGGACACGTCATG aacaccctttggtatggagccacccatggataccactttctctttttcagAAATCCCACAATACCTGCATGTTGGTGAGATCATAGATGAGTTAGACATGAAAGCAGAGGTTGGGCTCCTTACTCGCAACATTGTGATCCAGGGAGAGATGGAGGATTCATGCTATGCAGAAAACCACTGCCAATTCTTTGATTATGATACATTTGGGGGACATGTAATGgtgagcgggtgcgaactattgatggtgagagataggagtttcatgtgtgt Alignment from Exonerate_protein2genome AGATCCCCCAGTACCTGCACGTCGGTGAGATCATAGACGGGATAGACATGAGAGCTGAGGTTGGACTTCTCACCCGCAACATTGTGATCCAAGGAGAGATGGAGGATTCATGCTATGCAGAAAATCACTGCCAGTTCTTCGATTATGACACCTTTGGGGGACACGTCATG aacaccctttggtatggagccacccatggataccactttctctttttcagAAATCCCACAATACCTGCATGTTGGTGAGATCATAGATGAGTTAGACATGAAAGCAGAGGTTGGGCTCCTTACTCGCAACATTGTGATCCAGGGAGAGATGGAGGATTCATGCTATGCAGAAAACCACTGCCAATTCTTTGATTATGATACATTTGGGGGACATGTAATGgtgagcgggtgcgaactattgatggtgagagataggagtttcatgtgtgt Alignment from Exonerate_coding2genome AGATCCCCCAGTACCTGCACGTCGGTGAGATCATAGACGGGATAGACATGAGAGCTGAGGTTGGACTTCTCACCCGCAACATTGTGATCCAAGGAGAGATGGAGGATTCATGCTATGCAGAAAATCACTGCCAGTTCTTCGATTATGACACCTTTGGGGGACACGTCATG aacaccctttggtatggagccacccatggataccactttctctttttcagAAATCCCACAATACCTGCATGTTGGTGAGATCATAGATGAGTTAGACATGAAAGCAGAGGTTGGGCTCCTTACTCGCAACATTGTGATCCAGGGAGAGATGGAGGATTCATGCTATGCAGAAAACCACTGCCAATTCTTTGATTATGATACATTTGGGGGACATGTAATGgtgagcgggtgcgaactattgatggtgagagataggagtttcatgtgtgt Alignment from GeneWise AGATCCCCCAGTACCTGCACGTCGGTGAGATCATAGACGGGATAGACATGAGAGCTGAGGTTGGACTTCTCACCCGCAACATTGTGATCCAAGGAGAGATGGAGGATTCATGCTATGCAGAAAATCACTGCCAGTTCTTCGATTATGACACCTTTGGGGGACACGTCATG aacaccctttggtatggagccacccatggataccactttctctttttcagAAATCCCACAATACCTGCATGTTGGTGAGATCATAGATGAGTTAGACATGAAAGCAGAGGTTGGGCTCCTTACTCGCAACATTGTGATCCAGGGAGAGATGGAGGATTCATGCTATGCAGAAAACCACTGCCAATTCTTTGATTATGATACATTTGGGGGACATGTAATGgtgagcgggtgcgaactattgatggtgagagataggagtttcatgtgtgt #### Tmem2_ID4946_8 --> 0 - 2 Original Alignment ATCAAAGACACCATTGGCTTCGACACACTAGGTCATTGCTTCTTTTTGGAAGATGGTGTTGAACAGCGAAATATTTTGTATCATAACTTGGGGCTTCTTACCAAGCCGGGCACTCTCCTCCCAACGGACAGGAACAGCTCCATGTGCACCGTCATGCGTGATGGAGTGTTTGGAAACTACGTCCCTGTGCCTACCACAGACTGCat gaaagttaatcaactacctatgtaattacaagccaatgtttgtcttgcagATCAAAGACACTATTGGCCTTGACACACTAGGGCATTGTGTATTCTTGGAAGATGGTGTTGAACAGCGAAATATATTGTTTCATAATTTGGGGTTTCTTACCCAGCCAGGCACCCTCCTCTCAACTGATAGAAATAGCTCAATGTGTATAATAATGCGAGCAGGTGTGTTTGGAAACTATATCCCTGTTCCAACCACAGATTGTatgttcaataggacaggttactttgcaaaaaacctgtcactagagtggttgg Alignment from CESAR ATCAAAGACACCATTGGCTTCGACACACTAGGTCATTGCTTCTTTTTGGAAGATGGTGTTGAACAGCGAAATATTTTGTATCATAACTTGGGGCTTCTTACCAAGCCGGGCACTCTCCTCCCAACGGACAGGAACAGCTCCATGTGCACCGTCATGCGTGATGGAGTGTTTGGAAACTACGTCCCTGTGCCTACCACAGACTGCat gaaagttaatcaactacctatgtaattacaagccaatgtttgtcttgcagATCAAAGACACTATTGGCCTTGACACACTAGGGCATTGTGTATTCTTGGAAGATGGTGTTGAACAGCGAAATATATTGTTTCATAATTTGGGGTTTCTTACCCAGCCAGGCACCCTCCTCTCAACTGATAGAAATAGCTCAATGTGTATAATAATGCGAGCAGGTGTGTTTGGAAACTATATCCCTGTTCCAACCACAGATTGTatgttcaataggacaggttactttgcaaaaaacctgtcactagagtggttgg Alignment from Spaln_aa2Genome ATCAAAGACACCATTGGCTTCGACACACTAGGTCATTGCTTCTTTTTGGAAGATGGTGTTGAACAGCGAAATATTTTGTATCATAACTTGGGGCTTCTTACCAAGCCGGGCACTCTCCTCCCAACGGACAGGAACAGCTCCATGTGCACCGTCATGCGTGATGGAGTGTTTGGAAACTACGTCCCTGTGCCTACCACAGACTGCAT gaaagttaatcaactacctatgtaattacaagccaatgtttgtcttgcagATCAAAGACACTATTGGCCTTGACACACTAGGGCATTGTGTATTCTTGGAAGATGGTGTTGAACAGCGAAATATATTGTTTCATAATTTGGGGTTTCTTACCCAGCCAGGCACCCTCCTCTCAACTGATAGAAATAGCTCAATGTGTATAATAATGCGAGCAGGTGTGTTTGGAAACTATATCCCTGTTCCAACCACAGATTGTATgttcaataggacaggttactttgcaaaaaacctgtcactagagtggttgg Alignment from Spaln_nt2Genome ATCAAAGACACCATTGGCTTCGACACACTAGGTCATTGCTTCTTTTTGGAAGATGGTGTTGAACAGCGAAATATTTTGTATCATAACTTGGGGCTTCTTACCAAGCCGGGCACTCTCCTCCCAACGGACAGGAACAGCTCCATGTGCACCGTCATGCGTGATGGAGTGTTTGGAAACTACGTCCCTGTGCCTACCACAGACTGCAT gaaagttaatcaactacctatgtaattacaagccaatgtttgtcttgcagATCAAAGACACTATTGGCCTTGACACACTAGGGCATTGTGTATTCTTGGAAGATGGTGTTGAACAGCGAAATATATTGTTTCATAATTTGGGGTTTCTTACCCAGCCAGGCACCCTCCTCTCAACTGATAGAAATAGCTCAATGTGTATAATAATGCGAGCAGGTGTGTTTGGAAACTATATCCCTGTTCCAACCACAGATTGTATgttcaataggacaggttactttgcaaaaaacctgtcactagagtggttgg Alignment from Pairagon ATCAAAGACACCATTGGCTTCGACACACTAGGTCATTGCTTCTTTTTGGAAGATGGTGTTGAACAGCGAAATATTTTGTATCATAACTTGGGGCTTCTTACCAAGCCGGGCACTCTCCTCCCAACGGACAGGAACAGCTCCATGTGCACCGTCATGCGTGATGGAGTGTTTGGAAACTACGTCCCTGTGCCTACCACAGACTGCAT gaaagttaatcaactacctatgtaattacaagccaatgtttgtcttgcagATCAAAGACACTATTGGCCTTGACACACTAGGGCATTGTGTATTCTTGGAAGATGGTGTTGAACAGCGAAATATATTGTTTCATAATTTGGGGTTTCTTACCCAGCCAGGCACCCTCCTCTCAACTGATAGAAATAGCTCAATGTGTATAATAATGCGAGCAGGTGTGTTTGGAAACTATATCCCTGTTCCAACCACAGATTGTATgttcaataggacaggttactttgcaaaaaacctgtcactagagtggttgg Alignment from Exonerate_protein2genome ATCAAAGACACCATTGGCTTCGACACACTAGGTCATTGCTTCTTTTTGGAAGATGGTGTTGAACAGCGAAATATTTTGTATCATAACTTGGGGCTTCTTACCAAGCCGGGCACTCTCCTCCCAACGGACAGGAACAGCTCCATGTGCACCGTCATGCGTGATGGAGTGTTTGGAAACTACGTCCCTGTGCCTACCACAGACTGCAT gaaagttaatcaactacctatgtaattacaagccaatgtttgtcttgcagATCAAAGACACTATTGGCCTTGACACACTAGGGCATTGTGTATTCTTGGAAGATGGTGTTGAACAGCGAAATATATTGTTTCATAATTTGGGGTTTCTTACCCAGCCAGGCACCCTCCTCTCAACTGATAGAAATAGCTCAATGTGTATAATAATGCGAGCAGGTGTGTTTGGAAACTATATCCCTGTTCCAACCACAGATTGTATgttcaataggacaggttactttgcaaaaaacctgtcactagagtggttgg Alignment from Exonerate_coding2genome ATCAAAGACACCATTGGCTTCGACACACTAGGTCATTGCTTCTTTTTGGAAGATGGTGTTGAACAGCGAAATATTTTGTATCATAACTTGGGGCTTCTTACCAAGCCGGGCACTCTCCTCCCAACGGACAGGAACAGCTCCATGTGCACCGTCATGCGTGATGGAGTGTTTGGAAACTACGTCCCTGTGCCTACCACAGACTGCAT gaaagttaatcaactacctatgtaattacaagccaatgtttgtcttgcagATCAAAGACACTATTGGCCTTGACACACTAGGGCATTGTGTATTCTTGGAAGATGGTGTTGAACAGCGAAATATATTGTTTCATAATTTGGGGTTTCTTACCCAGCCAGGCACCCTCCTCTCAACTGATAGAAATAGCTCAATGTGTATAATAATGCGAGCAGGTGTGTTTGGAAACTATATCCCTGTTCCAACCACAGATTGTATgttcaataggacaggttactttgcaaaaaacctgtcactagagtggttgg Alignment from GeneWise ATCAAAGACACCATTGGCTTCGACACACTAGGTCATTGCTTCTTTTTGGAAGATGGTGTTGAACAGCGAAATATTTTGTATCATAACTTGGGGCTTCTTACCAAGCCGGGCACTCTCCTCCCAACGGACAGGAACAGCTCCATGTGCACCGTCATGCGTGATGGAGTGTTTGGAAACTACGTCCCTGTGCCTACCACAGACTGCAT gaaagttaatcaactacctatgtaattacaagccaatgtttgtcttgcagATCAAAGACACTATTGGCCTTGACACACTAGGGCATTGTGTATTCTTGGAAGATGGTGTTGAACAGCGAAATATATTGTTTCATAATTTGGGGTTTCTTACCCAGCCAGGCACCCTCCTCTCAACTGATAGAAATAGCTCAATGTGTATAATAATGCGAGCAGGTGTGTTTGGAAACTATATCCCTGTTCCAACCACAGATTGTATgttcaataggacaggttactttgcaaaaaacctgtcactagagtggttgg #### Tmem2_ID4950_11 --> 0 - 2 Original Alignment GCTGGTTTATTTGTGGACAAAGGTGTCAAAACGACCAACGCCAGTGCATCTGACCCAAGGGAGTACCTCTGCCTGGATAACAGTGCAag ggattgtgcaagtatgtcctgctttatgcaagtcgttttatcatcaacagGCAGGGTTGTTTGTAGATAAAGGTGTGAAAAAAACTAATGCCTCAGCATCTGATCCAAGGGAGTATCTTTGTCTGGATAACAGTGCAaggttagtgattttgtatgttgacactctagctttgctttgagattagattg Alignment from CESAR GCTGGTTTATTTGTGGACAAAGGTGTCAAAACGACCAACGCCAGTGCATCTGACCCAAGGGAGTACCTCTGCCTGGATAACAGTGCAag ggattgtgcaagtatgtcctgctttatgcaagtcgttttatcatcaacagGCAGGGTTGTTTGTAGATAAAGGTGTGAAAAAAACTAATGCCTCAGCATCTGATCCAAGGGAGTATCTTTGTCTGGATAACAGTGCAaggttagtgattttgtatgttgacactctagctttgctttgagattagattg Alignment from Spaln_aa2Genome GCTGGTTTATTTGTGGACAAAGGTGTCAAAACGACCAACGCCAGTGCATCTGACCCAAGGGAGTACCTCTGCCTGGATAACAGTGCAAG ggattgtgcaagtatgtcctgctttatgcaagtcgttttatcatcaacagGCAGGGTTGTTTGTAGATAAAGGTGTGAAAAAAACTAATGCCTCAGCATCTGATCCAAGGGAGTATCTTTGTCTGGATAACAGTGCAAGgttagtgattttgtatgttgacactctagctttgctttgagattagattg Alignment from Spaln_nt2Genome GCTGGTTTATTTGTGGACAAAGGTGTCAAAACGACCAACGCCAGTGCATCTGACCCAAGGGAGTACCTCTGCCTGGATAACAGTGCAAG ggattgtgcaagtatgtcctgctttatgcaagtcgttttatcatcaacagGCAGGGTTGTTTGTAGATAAAGGTGTGAAAAAAACTAATGCCTCAGCATCTGATCCAAGGGAGTATCTTTGTCTGGATAACAGTGCAAGgttagtgattttgtatgttgacactctagctttgctttgagattagattg Alignment from Pairagon GCTGGTTTATTTGTGGACAAAGGTGTCAAAACGACCAACGCCAGTGCATCTGACCCAAGGGAGTACCTCTGCCTGGATAACAGTGCAAG ggattgtgcaagtatgtcctgctttatgcaagtcgttttatcatcaacagGCAGGGTTGTTTGTAGATAAAGGTGTGAAAAAAACTAATGCCTCAGCATCTGATCCAAGGGAGTATCTTTGTCTGGATAACAGTGCAAGgttagtgattttgtatgttgacactctagctttgctttgagattagattg Alignment from Exonerate_protein2genome GCTGGTTTATTTGTGGACAAAGGTGTCAAAACGACCAACGCCAGTGCATCTGACCCAAGGGAGTACCTCTGCCTGGATAACAGTGCAAG ggattgtgcaagtatgtcctgctttatgcaagtcgttttatcatcaacagGCAGGGTTGTTTGTAGATAAAGGTGTGAAAAAAACTAATGCCTCAGCATCTGATCCAAGGGAGTATCTTTGTCTGGATAACAGTGCAAGgttagtgattttgtatgttgacactctagctttgctttgagattagattg Alignment from Exonerate_coding2genome GCTGGTTTATTTGTGGACAAAGGTGTCAAAACGACCAACGCCAGTGCATCTGACCCAAGGGAGTACCTCTGCCTGGATAACAGTGCAAG ggattgtgcaagtatgtcctgctttatgcaagtcgttttatcatcaacagGCAGGGTTGTTTGTAGATAAAGGTGTGAAAAAAACTAATGCCTCAGCATCTGATCCAAGGGAGTATCTTTGTCTGGATAACAGTGCAAGgttagtgattttgtatgttgacactctagctttgctttgagattagattg Alignment from GeneWise GCTGGTTTATTTGTGGACAAAGGTGTCAAAACGACCAACGCCAGTGCATCTGACCCAAGGGAGTACCTCTGCCTGGATAACAGTGCAAG ggattgtgcaagtatgtcctgctttatgcaagtcgttttatcatcaacagGCAGGGTTGTTTGTAGATAAAGGTGTGAAAAAAACTAATGCCTCAGCATCTGATCCAAGGGAGTATCTTTGTCTGGATAACAGTGCAAGgttagtgattttgtatgttgacactctagctttgctttgagattagattg #### Tmem2_ID4953_14 --> 1 - 2 Original Alignment tGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACGCTACCCAGGAACag tgtgtgccggccacttttgaacacttacaattttcctttacctgttgcagtGATGGTAGCTTTGCAACTGATGAAGGGTCCAGTCAAGAGGTAACACAGTCCCTCTTTGTTGGGGAAAGTAGGATATATGGCTTTCAAGAAGGTCAAAACAAGTACATGGGCTCGGGTGGAATTGACCAGAAACCTCGCAGTCTACCCAGAAATaggtgagttggatgtgggtagtggagtacttgacctgtagttcacctgtatg Alignment from CESAR tGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACGCTACCCAGGAACag tgtgtgccggccacttttgaacacttacaattttcctttacctgttgcagtGATGGTAGCTTTGCAACTGATGAAGGGTCCAGTCAAGAGGTAACACAGTCCCTCTTTGTTGGGGAAAGTAGGATATATGGCTTTCAAGAAGGTCAAAACAAGTACATGGGCTCGGGTGGAATTGACCAGAAACCTCGCAGTCTACCCAGAAATaggtgagttggatgtgggtagtggagtacttgacctgtagttcacctgtatg Alignment from Spaln_aa2Genome TGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACGCTACCCAGGAACAG tgtgtgccggccacttttgaacacttacaattttcctttacctgttgcagTGATGGTAGCTTTGCAACTGATGAAGGGTCCAGTCAAGAGGTAACACAGTCCCTCTTTGTTGGGGAAAGTAGGATATATGGCTTTCAAGAAGGTCAAAACAAGTACATGGGCTCGGGTGGAATTGACCAGAAACCTCGCAGTCTACCCAGAAATAGgtgagttggatgtgggtagtggagtacttgacctgtagttcacctgtatg Alignment from Spaln_nt2Genome TGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACGCTACCCAGGAACAG tgtgtgccggccacttttgaacacttacaattttcctttacctgttgcagTGATGGTAGCTTTGCAACTGATGAAGGGTCCAGTCAAGAGGTAACACAGTCCCTCTTTGTTGGGGAAAGTAGGATATATGGCTTTCAAGAAGGTCAAAACAAGTACATGGGCTCGGGTGGAATTGACCAGAAACCTCGCAGTCTACCCAGAAATAGgtgagttggatgtgggtagtggagtacttgacctgtagttcacctgtatg Alignment from Pairagon TGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACGCTACCCAGGAACAG tgtgtgccggccacttttgaacacttacaattttcctttacctgttgcagTGATGGTAGCTTTGCAACTGATGAAGGGTCCAGTCAAGAGGTAACACAGTCCCTCTTTGTTGGGGAAAGTAGGATATATGGCTTTCAAGAAGGTCAAAACAAGTACATGGGCTCGGGTGGAATTGACCAGAAACCTCGCAGTCTACCCAGAAATAGgtgagttggatgtgggtagtggagtacttgacctgtagttcacctgtatg Alignment from Exonerate_protein2genome TGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACGCTACCCAGGAACAG tgtgtgccggccacttttgaacacttacaattttcctttacctgttgcagTGATGGTAGCTTTGCAACTGATGAAGGGTCCAGTCAAGAGGTAACACAGTCCCTCTTTGTTGGGGAAAGTAGGATATATGGCTTTCAAGAAGGTCAAAACAAGTACATGGGCTCGGGTGGAATTGACCAGAAACCTCGCAGTCTACCCAGAAATAGgtgagttggatgtgggtagtggagtacttgacctgtagttcacctgtatg Alignment from Exonerate_coding2genome ATTTGCAGATAACGGAAAGGGGCTGACCTTTGCCAGTGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACGCTACCCAGGAACAG tgtgtgccggccacTTTTGAACACTTACAATTTTCCTTTACCTGTTGCAGTGATGGTAGCTTTGCAACTGATGAAGGGTCCAGTCAAGAGGTAACACAGTCCCTCTTTGTTGGGGAAAGTAGGATATATGGCTTTCAAGAAGGTCAAAACAAGTACATGGGCTCGGGTGGAATTGACCAGAAACCTCGCAGTCTACCCAGAAATAGgtgagttggatgtgggtagtggagtacttgacctgtagttcacctgtatg Alignment from GeneWise TGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACGCTACCCAGGAACAG tgtgtgccggccacttttgaacacttacaattttcctttacctgttgcagTGATGGTAGCTTTGCAACTGATGAAGGGTCCAGTCAAGAGGTAACACAGTCCCTCTTTGTTGGGGAAAGTAGGATATATGGCTTTCAAGAAGGTCAAAACAAGTACATGGGCTCGGGTGGAATTGACCAGAAACCTCGCAGTCTACCCAGAAATAGgtgagttggatgtgggtagtggagtacttgacctgtagttcacctgtatg #### Tmem2_ID4954_15 --> 1 - 0 Original Alignment gACATTCCCAATCCGAGGCTTTCAGATTTACGATGGGCCTATTCATCTCACAAAGAGTACTTTCAAAAAGTATGTGCCAACTCCAGACAGGTACAGCAGTGCAATTGGCTTCCTCATGAAGAATTCCTGGCAGACAACACCCAGGAATAACGTTTCCCTTGTGAAGTTTGGTCCACAG atagcagagtgggtctttagtagatcttcatcttcttctttattttacaggACATTCCCAATCCGAGGCTTTGAAATTTATGATGGTCCTATTTATCTCACAAAAAGCACTTTTAAAAAGTATGTGCCCACTCCTGACAGGTACAGCAGTGCGATTGGGTTCCTCATGAAGAATTCCTGGCAGACAACACCCCGGAATAACGTTTCACTTGTGCAGTTTGGC---CAAgtaagtcttattacacctctttggcatagactggtaaaagaaaggcaagg Alignment from CESAR gACATTCCCAATCCGAGGCTTTCAGATTTACGATGGGCCTATTCATCTCACAAAGAGTACTTTCAAAAAGTATGTGCCAACTCCAGACAGGTACAGCAGTGCAATTGGCTTCCTCATGAAGAATTCCTGGCAGACAACACCCAGGAATAACGTTTCCCTTGTGAAGTTTGGTCCACAG atagcagagtgggtctttagtagatcttcatcttcttctttattttacaggACATTCCCAATCCGAGGCTTTGAAATTTATGATGGTCCTATTTATCTCACAAAAAGCACTTTTAAAAAGTATGTGCCCACTCCTGACAGGTACAGCAGTGCGATTGGGTTCCTCATGAAGAATTCCTGGCAGACAACACCCCGGAATAACGTTTCACTTGTGCAGTTTGGC---CAAgtaagtcttattacacctctttggcatagactggtaaaagaaaggcaagg Alignment from Spaln_aa2Genome GACATTCCCAATCCGAGGCTTTCAGATTTACGATGGGCCTATTCATCTCACAAAGAGTACTTTCAAAAAGTATGTGCCAACTCCAGACAGGTACAGCAGTGCAATTGGCTTCCTCATGAAGAATTCCTGGCAGACAACACCCAGGAATAACGTTTCCCTTGTGAAGTTTGGTCCACAG atagcagagtgggtctttagtagatcttcatcttcttctttattttacagGACATTCCCAATCCGAGGCTTTGAAATTTATGATGGTCCTATTTATCTCACAAAAAGCACTTTTAAAAAGTATGTGCCCACTCCTGACAGGTACAGCAGTGCGATTGGGTTCCTCATGAAGAATTCCTGGCAGACAACACCCCGGAATAACGTTTCACTTGTGCAGTTTGGC---CAAgtaagtcttattacacctctttggcatagactggtaaaagaaaggcaagg Alignment from Spaln_nt2Genome GACATTCCCAATCCGAGGCTTTCAGATTTACGATGGGCCTATTCATCTCACAAAGAGTACTTTCAAAAAGTATGTGCCAACTCCAGACAGGTACAGCAGTGCAATTGGCTTCCTCATGAAGAATTCCTGGCAGACAACACCCAGGAATAACGTTTCCCTTGTGAAGTTTGGTCCA atagcagagtgggtctttagtagatcttcatcttcttctttattttacagGACATTCCCAATCCGAGGCTTTGAAATTTATGATGGTCCTATTTATCTCACAAAAAGCACTTTTAAAAAGTATGTGCCCACTCCTGACAGGTACAGCAGTGCGATTGGGTTCCTCATGAAGAATTCCTGGCAGACAACACCCCGGAATAACGTTTCACTTGTGCAGTTTGGCCAAgtaagtcttattacacctctttggcatagactggtaaaagaaaggcaagg Alignment from Pairagon GACATTCCCAATCCGAGGCTTTCAGATTTACGATGGGCCTATTCATCTCACAAAGAGTACTTTCAAAAAGTATGTGCCAACTCCAGACAGGTACAGCAGTGCAATTGGCTTCCTCATGAAGAATTCCTGGCAGACAACACCCAGGAATAACGTTTCCCTTGTGAAGTTTGGTCCA atagcagagtgggtctttagtagatcttcatcttcttctttattttacagGACATTCCCAATCCGAGGCTTTGAAATTTATGATGGTCCTATTTATCTCACAAAAAGCACTTTTAAAAAGTATGTGCCCACTCCTGACAGGTACAGCAGTGCGATTGGGTTCCTCATGAAGAATTCCTGGCAGACAACACCCCGGAATAACGTTTCACTTGTGCAGTTTGGCCAAgtaagtcttattacacctctttggcatagactggtaaaagaaaggcaagg Alignment from Exonerate_protein2genome GACATTCCCAATCCGAGGCTTTCAGATTTACGATGGGCCTATTCATCTCACAAAGAGTACTTTCAAAAAGTATGTGCCAACTCCAGACAGGTACAGCAGTGCAATTGGCTTCCTCATGAAGAATTCCTGGCAGACAACACCCAGGAATAACGTTTCCCTTGTGAAGTTTGGTCCACAG atagcagagtgggtctttagtagatcttcatcttcttctttattttacagGACATTCCCAATCCGAGGCTTTGAAATTTATGATGGTCCTATTTATCTCACAAAAAGCACTTTTAAAAAGTATGTGCCCACTCCTGACAGGTACAGCAGTGCGATTGGGTTCCTCATGAAGAATTCCTGGCAGACAACACCCCGGAATAACGTTTCACTTGTGCAGTTTGGC---CAAgtaagtcttattacacctctttggcatagactggtaaaagaaaggcaagg Alignment from Exonerate_coding2genome GACATTCCCAATCCGAGGCTTTCAGATTTACGATGGGCCTATTCATCTCACAAAGAGTACTTTCAAAAAGTATGTGCCAACTCCAGACAGGTACAGCAGTGCAATTGGCTTCCTCATGAAGAATTCCTGGCAGACAACACCCAGGAATAACGTTTCCCTTGTGAAGTTTGGTCCACAG atagcagagtgggtctttagtagatcttcatcttcttctttattttacagGACATTCCCAATCCGAGGCTTTGAAATTTATGATGGTCCTATTTATCTCACAAAAAGCACTTTTAAAAAGTATGTGCCCACTCCTGACAGGTACAGCAGTGCGATTGGGTTCCTCATGAAGAATTCCTGGCAGACAACACCCCGGAATAACGTTTCACTTGTGCAGTTTGGC---CAAgtaagtcttattacacctctttggcatagactggtaaaagaaaggcaagg Alignment from GeneWise GACATTCCCAATCCGAGGCTTTCAGATTTACGATGGGCCTATTCATCTCACAAAGAGTACTTTCAAAAAGTATGTGCCAACTCCAGACAGGTACAGCAGTGCAATTGGCTTCCTCATGAAGAATTCCTGGCAGACAACACCCAGGAATAACGTTTCCCTTGTGAAGTTTGGTCCACAG atagcagagtgggtctttagtagatcttcatcttcttctttattttacagGACATTCCCAATCCGAGGCTTTGAAATTTATGATGGTCCTATTTATCTCACAAAAAGCACTTTTAAAAAGTATGTGCCCACTCCTGACAGGTACAGCAGTGCGATTGGGTTCCTCATGAAGAATTCCTGGCAGACAACACCCCGGAATAACGTTTCACTTGTGCAGTTTGGC---CAAgtaagtcttattacacctctttggcatagactggtaaaagaaaggcaagg #### Tmem2_ID4955_16 --> 0 - 0 Original Alignment GTCTCTCTGAACGTCTTCTTTGGAAAGCCTGGCCCCTGGTTTGAGGATTGTGAGCTGGACGGCGATAAGAACTCCATCTTCCATGACATTGATGGCTCTGTGACAGGATACAAGGACACCTATGTGGGAAGGATGGACAACTACCTGATCCGCCATCCAAACTGTGTCAATGTTACTAAGTGGAATGCAGTGATCTGTAGCGGGACCTACGCCCAG accagggaatgtaagcttcagacaacactatgtttcactttctcttacagGTCTCTCTGAACATATTTTTTGGGAAGCCTGGCCCATGGTTTGAT------GAACTGGACAGCGATAAGAATTCCATCTTCCATGACATTGATGGTTCTGTGACAGGGTACAGGGATACCTATGTGGGAAGGATGGACAACTACCTGATCTACCATCCAAACTGTGTCAATGTTACCAAGTGGAATACTGTAATTTGTAGTGGGAGATATGCCCAGgtaggcggtccagttggtccaagcctgccactactcaagatgacagccag Alignment from CESAR GTCTCTCTGAACGTCTTCTTTGGAAAGCCTGGCCCCTGGTTTGAGGATTGTGAGCTGGACGGCGATAAGAACTCCATCTTCCATGACATTGATGGCTCTGTGACAGGATACAAGGACACCTATGTGGGAAGGATGGACAACTACCTGATCCGCCATCCAAACTGTGTCAATGTTACTAAGTGGAATGCAGTGATCTGTAGCGGGACCTACGCCCAG accagggaatgtaagcttcagacaacactatgtttcactttctcttacagGTCTCTCTGAACATATTTTTTGGGAAGCCTGGCCCATGGTTTGAT------GAACTGGACAGCGATAAGAATTCCATCTTCCATGACATTGATGGTTCTGTGACAGGGTACAGGGATACCTATGTGGGAAGGATGGACAACTACCTGATCTACCATCCAAACTGTGTCAATGTTACCAAGTGGAATACTGTAATTTGTAGTGGGAGATATGCCCAGgtaggcggtccagttggtccaagcctgccactactcaagatgacagccag Alignment from Spaln_aa2Genome GTCTCTCTGAACGTCTTCTTTGGAAAGCCTGGCCCCTGGTTTGAGGATTGTGAGCTGGACGGCGATAAGAACTCCATCTTCCATGACATTGATGGCTCTGTGACAGGATACAAGGACACCTATGTGGGAAGGATGGACAACTACCTGATCCGCCATCCAAACTGTGTCAATGTTACTAAGTGGAATGCAGTGATCTGTAGCGGGACCTACGCCCAG accagggaatgtaagcttcagacaacactatgtttcactttctcttacagGTCTCTCTGAACATATTTTTTGGGAAGCCTGGCCCATGGTTTGAT------GAACTGGACAGCGATAAGAATTCCATCTTCCATGACATTGATGGTTCTGTGACAGGGTACAGGGATACCTATGTGGGAAGGATGGACAACTACCTGATCTACCATCCAAACTGTGTCAATGTTACCAAGTGGAATACTGTAATTTGTAGTGGGAGATATGCCCAGgtaggcggtccagttggtccaagcctgccactactcaagatgacagccag Alignment from Spaln_nt2Genome GTCTCTCTGAACGTCTTCTTTGGAAAGCCTGGCCCCTGGTTTGAGGATTGTGAGCTGGACGGCGATAAGAACTCCATCTTCCATGACATTGATGGCTCTGTGACAGGATACAAGGACACCTATGTGGGAAGGATGGACAACTACCTGATCCGCCATCCAAACTGTGTCAATGTTACTAAGTGGAATGCAGTGATCTGTAGCGGGACCTACGCCCAG accagggaatgtaagcttcagacaacactatgtttcactttctcttacagGTCTCTCTGAACATATTTTTTGGGAAGCCTGGCCCATGGTTTGA------TGAACTGGACAGCGATAAGAATTCCATCTTCCATGACATTGATGGTTCTGTGACAGGGTACAGGGATACCTATGTGGGAAGGATGGACAACTACCTGATCTACCATCCAAACTGTGTCAATGTTACCAAGTGGAATACTGTAATTTGTAGTGGGAGATATGCCCAGgtaggcggtccagttggtccaagcctgccactactcaagatgacagccag Alignment from Pairagon --------------------------CAGGTCTCTCTGAACGTCTTCTTTGGAAAGCCTGGCCCCTGGTTTGAGGATTGTGAGCTGGACGGCGATAAGAACTCCATCTTCCATGACATTGATGGCTCTGTGACAGGATACAAGGACACCTATGTGGGAAGGATGGACAACTACCTGATCCGCCATCCAAACTGTGTCAATGTTACTAAGTGGAATGCAGTGATCTGTAGCGGGACCTACGCCCAG accagggaatgtaagcttcagACAACACTATGTTTCACTTTCTCTTACAGGTCTCTCTGAACATATTTTTTGGGAAGCCTGGCCCATGGTTTGA------TGAACTGGACAGCGATAAGAATTCCATCTTCCATGACATTGATGGTTCTGTGACAGGGTACAGGGATACCTATGTGGGAAGGATGGACAACTACCTGATCTACCATCCAAACTGTGTCAATGTTACCAAGTGGAATACTGTAATTTGTAGTGGGAGATATGCCCAGgtaggcggtccagttggtccaagcctgccactactcaagatgacagccag Alignment from Exonerate_protein2genome GTCTCTCTGAACGTCTTCTTTGGAAAGCCTGGCCCCTGGTTTGAGGATTGTGAGCTGGACGGCGATAAGAACTCCATCTTCCATGACATTGATGGCTCTGTGACAGGATACAAGGACACCTATGTGGGAAGGATGGACAACTACCTGATCCGCCATCCAAACTGTGTCAATGTTACTAAGTGGAATGCAGTGATCTGTAGCGGGACCTACGCCCAG accagggaatgtaagcttcagacaacactatgtttcactttctcttacagGTCTCTCTGAACATATTTTTTGGGAAGCCTGGCCCATGGTTTGAT------GAACTGGACAGCGATAAGAATTCCATCTTCCATGACATTGATGGTTCTGTGACAGGGTACAGGGATACCTATGTGGGAAGGATGGACAACTACCTGATCTACCATCCAAACTGTGTCAATGTTACCAAGTGGAATACTGTAATTTGTAGTGGGAGATATGCCCAGgtaggcggtccagttggtccaagcctgccactactcaagatgacagccag Alignment from Exonerate_coding2genome GTCTCTCTGAACGTCTTCTTTGGAAAGCCTGGCCCCTGGTTTGAGGATTGTGAGCTGGACGGCGATAAGAACTCCATCTTCCATGACATTGATGGCTCTGTGACAGGATACAAGGACACCTATGTGGGAAGGATGGACAACTACCTGATCCGCCATCCAAACTGTGTCAATGTTACTAAGTGGAATGCAGTGATCTGTAGCGGGACCTACGCCCAG accagggaatgtaagcttcagacaacactatgtttcactttctcttacagGTCTCTCTGAACATATTTTTTGGGAAGCCTGGCCCATGGTTTGAT------GAACTGGACAGCGATAAGAATTCCATCTTCCATGACATTGATGGTTCTGTGACAGGGTACAGGGATACCTATGTGGGAAGGATGGACAACTACCTGATCTACCATCCAAACTGTGTCAATGTTACCAAGTGGAATACTGTAATTTGTAGTGGGAGATATGCCCAGgtaggcggtccagttggtccaagcctgccactactcaagatgacagccag Alignment from GeneWise GTCTCTCTGAACGTCTTCTTTGGAAAGCCTGGCCCCTGGTTTGAGGATTGTGAGCTGGACGGCGATAAGAACTCCATCTTCCATGACATTGATGGCTCTGTGACAGGATACAAGGACACCTATGTGGGAAGGATGGACAACTACCTGATCCGCCATCCAAACTGTGTCAATGTTACTAAGTGGAATGCAGTGATCTGTAGCGGGACCTACGCCCAG accagggaatgtaagcttcagacaacactatgtttcactttctcttacagGTCTCTCTGAACATATTTTTTGGGAAGCCTGGCCCATGGTTTGAT------GAACTGGACAGCGATAAGAATTCCATCTTCCATGACATTGATGGTTCTGTGACAGGGTACAGGGATACCTATGTGGGAAGGATGGACAACTACCTGATCTACCATCCAAACTGTGTCAATGTTACCAAGTGGAATACTGTAATTTGTAGTGGGAGATATGCCCAGgtaggcggtccagttggtccaagcctgccactactcaagatgacagccag #### Tmem2_ID4958_17 --> 0 - 2 Original Alignment GTGTATGTTCAGACCTGGAACACTCCGAATCTTAGCATGATCATCACACGGGATGAATACCCATCCCACCCAATGGTGCTTCGGGGTATCAACCAGAGGGCCATCTCTCCACAGTACCAGCCTGTTGTCATGCTGGAGAAGGGCTACACCATCCACTGGAATGGTCCAGCGCCACGAACCACTTTCTTGTACCTCGTGAACTTCAACaa caagtctaattttctaccaaactttatcaaatccctccattgtctccaagGTGTTTGTTCAGACCTGGAACTCTCCAAACCTTAGCATGATCATCACACGGGACGAATACCCATCC---CCAATGGTACTTCGGGGTATCAATCAGAGAGCCATCTCCCCACAGTATCAACCTCTTGTCATGCTGCAGAAGGGCTACAGCATCCATTGGAATGGGACTGTGCCACGGACCACCTTTGTGTACCTGGTGAATTCTAATgagtaaggccttgtgttgtttgtgtgcttgcaaattaattgaacaagtgaga Alignment from CESAR GTGTATGTTCAGACCTGGAACACTCCGAATCTTAGCATGATCATCACACGGGATGAATACCCATCCCACCCAATGGTGCTTCGGGGTATCAACCAGAGGGCCATCTCTCCACAGTACCAGCCTGTTGTCATGCTGGAGAAGGGCTACACCATCCACTGGAATGGTCCAGCGCCACGAACCACTTTCTTGTACCTCGTGAACTTCAACaa caagtctaattttctaccaaactttatcaaatccctccattgtctccaagGTGTTTGTTCAGACCTGGAACTCTCCAAACCTTAGCATGATCATCACACGGGACGAATACCCATCC---CCAATGGTACTTCGGGGTATCAATCAGAGAGCCATCTCCCCACAGTATCAACCTCTTGTCATGCTGCAGAAGGGCTACAGCATCCATTGGAATGGGACTGTGCCACGGACCACCTTTGTGTACCTGGTGAATTCTAATgagtaaggccttgtgttgtttgtgtgcttgcaaattaattgaacaagtgaga Alignment from Spaln_aa2Genome GTGTATGTTCAGACCTGGAACACTCCGAATCTTAGCATGATCATCACACGGGATGAATACCCATCCCACCCAATGGTGCTTCGGGGTATCAACCAGAGGGCCATCTCTCCACAGTACCAGCCTGTTGTCATGCTGGAGAAGGGCTACACCATCCACTGGAATGGTCCAGCGCCACGAACCACTTTCTTGTACCTCGTGAACTTCAACAA caagtctaattttctaccaaactttatcaaatccctccattgtctccaagGTGTTTGTTCAGACCTGGAACTCTCCAAACCTTAGCATGATCATCACACGGGACGAATACCCATCC---CCAATGGTACTTCGGGGTATCAATCAGAGAGCCATCTCCCCACAGTATCAACCTCTTGTCATGCTGCAGAAGGGCTACAGCATCCATTGGAATGGGACTGTGCCACGGACCACCTTTGTGTACCTGGTGAATTCTAATGAgtaaggccttgtgttgtttgtgtgcttgcaaattaattgaacaagtgaga Alignment from Spaln_nt2Genome GTGTATGTTCAGACCTGGAACACTCCGAATCTTAGCATGATCATCACACGGGATGAATACCCATCCCACCCAATGGTGCTTCGGGGTATCAACCAGAGGGCCATCTCTCCACAGTACCAGCCTGTTGTCATGCTGGAGAAGGGCTACACCATCCACTGGAATGGTCCAGCGCCACGAACCACTTTCTTGTACCTCGTGAACTTCAACAA caagtctaattttctaccaaactttatcaaatccctccattgtctccaagGTGTTTGTTCAGACCTGGAACTCTCCAAACCTTAGCATGATCATCACACGGGACGAATACCCATC---CCCAATGGTACTTCGGGGTATCAATCAGAGAGCCATCTCCCCACAGTATCAACCTCTTGTCATGCTGCAGAAGGGCTACAGCATCCATTGGAATGGGACTGTGCCACGGACCACCTTTGTGTACCTGGTGAATTCTAATGAgtaaggccttgtgttgtttgtgtgcttgcaaattaattgaacaagtgaga Alignment from Pairagon GTGTATGTTCAGACCTGGAACACTCCGAATCTTAGCATGATCATCACACGGGATGAATACCCATCCCACCCAATGGTGCTTCGGGGTATCAACCAGAGGGCCATCTCTCCACAGTACCAGCCTGTTGTCATGCTGGAGAAGGGCTACACCATCCACTGGAATGGTCCAGCGCCACGAACCACTTTCTTGTACCTCGTGAACTTCAACAA caagtctaattttctaccaaactttatcaaatccctccattgtctccaagGTGTTTGTTCAGACCTGGAACTCTCCAAACCTTAGCATGATCATCACACGGGACGAATACCCATC---CCCAATGGTACTTCGGGGTATCAATCAGAGAGCCATCTCCCCACAGTATCAACCTCTTGTCATGCTGCAGAAGGGCTACAGCATCCATTGGAATGGGACTGTGCCACGGACCACCTTTGTGTACCTGGTGAATTCTAATGAgtaaggccttgtgttgtttgtgtgcttgcaaattaattgaacaagtgaga Alignment from Exonerate_protein2genome GTGTATGTTCAGACCTGGAACACTCCGAATCTTAGCATGATCATCACACGGGATGAATACCCATCCCACCCAATGGTGCTTCGGGGTATCAACCAGAGGGCCATCTCTCCACAGTACCAGCCTGTTGTCATGCTGGAGAAGGGCTACACCATCCACTGGAATGGTCCAGCGCCACGAACCACTTTCTTGTACCTCGTGAACTTCAACAA caagtctaattttctaccaaactttatcaaatccctccattgtctccaagGTGTTTGTTCAGACCTGGAACTCTCCAAACCTTAGCATGATCATCACACGGGACGAATACCCATCC---CCAATGGTACTTCGGGGTATCAATCAGAGAGCCATCTCCCCACAGTATCAACCTCTTGTCATGCTGCAGAAGGGCTACAGCATCCATTGGAATGGGACTGTGCCACGGACCACCTTTGTGTACCTGGTGAATTCTAATGAgtaaggccttgtgttgtttgtgtgcttgcaaattaattgaacaagtgaga Alignment from Exonerate_coding2genome GTGTATGTTCAGACCTGGAACACTCCGAATCTTAGCATGATCATCACACGGGATGAATACCCATCCCACCCAATGGTGCTTCGGGGTATCAACCAGAGGGCCATCTCTCCACAGTACCAGCCTGTTGTCATGCTGGAGAAGGGCTACACCATCCACTGGAATGGTCCAGCGCCACGAACCACTTTCTTGTACCTCGTGAACTTCAACAA caagtctaattttctaccaaactttatcaaatccctccattgtctccaagGTGTTTGTTCAGACCTGGAACTCTCCAAACCTTAGCATGATCATCACACGGGACGAATACCCATCC---CCAATGGTACTTCGGGGTATCAATCAGAGAGCCATCTCCCCACAGTATCAACCTCTTGTCATGCTGCAGAAGGGCTACAGCATCCATTGGAATGGGACTGTGCCACGGACCACCTTTGTGTACCTGGTGAATTCTAATGAgtaaggccttgtgttgtttgtgtgcttgcaaattaattgaacaagtgaga Alignment from GeneWise GTGTATGTTCAGACCTGGAACACTCCGAATCTTAGCATGATCATCACACGGGATGAATACCCATCCCACCCAATGGTGCTTCGGGGTATCAACCAGAGGGCCATCTCTCCACAGTACCAGCCTGTTGTCATGCTGGAGAAGGGCTACACCATCCACTGGAATGGTCCAGCGCCACGAACCACTTTCTTGTACCTCGTGAACTTCAACAA caagtctaattttctaccaaactttatcaaatccctccattgtctccaagGTGTTTGTTCAGACCTGGAACTCTCCAAACCTTAGCATGATCATCACACGGGACGAATACCCATCC---CCAATGGTACTTCGGGGTATCAATCAGAGAGCCATCTCCCCACAGTATCAACCTCTTGTCATGCTGCAGAAGGGCTACAGCATCCATTGGAATGGGACTGTGCCACGGACCACCTTTGTGTACCTGGTGAATTCTAATGAgtaaggccttgtgttgtttgtgtgcttgcaaattaattgaacaagtgaga #### Tmem2_ID4963_20 --> 0 - 0 Original Alignment ATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGATTCCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCC acattgatccacttgccgtgagagtgggaccaaaaccgtctcacctctagATGGTGTTCACTAGTGACCCACACAAAAGCTATCTCCCTGTATGCTTTCATTCACCTGGGAAAGCAGAAATTCAGCAAGGTGATCCATCTATTATTTCTgtaagtagagtcctcaggcacatcctcactttttgggagtgcccatgact Alignment from CESAR ATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGATTCCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCC acattgatccacttgccgtgagagtgggaccaaaaccgtctcacctctagATGGTGTTCACTAGTGACCCACACAAAAGCTATCTCCCTGTATGCTTTCATTCACCTGGGAAAGCAGAAATTCAGCAAGGTGATCCATCTATTATTTCTgtaagtagagtcctcaggcacatcctcactttttgggagtgcccatgact Alignment from Spaln_aa2Genome ATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGATTCCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCC acattgatccacttgccgtgagagtgggaccaaaaccgtctcacctctagATGGTGTTCACTAGTGACCCACACAAAAGCTATCTCCCTGTATGCTTTCATTCACCTGGGAAAGCAGAAATTCAGCAAGGTGATCCATCTATTATTTCTgtaagtagagtcctcaggcacatcctcactttttgggagtgcccatgact Alignment from Spaln_nt2Genome ATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGATTCCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCC acattgatccacttgccgtgagagtgggaccaaaaccgtctcacctctagATGGTGTTCACTAGTGACCCACACAAAAGCTATCTCCCTGTATGCTTTCATTCACCTGGGAAAGCAGAAATTCAGCAAGGTGATCCATCTATTATTTCTgtaagtagagtcctcaggcacatcctcactttttgggagtgcccatgact Alignment from Pairagon ATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGATTCCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCC acattgatccacttgccgtgagagtgggaccaaaaccgtctcacctctagATGGTGTTCACTAGTGACCCACACAAAAGCTATCTCCCTGTATGCTTTCATTCACCTGGGAAAGCAGAAATTCAGCAAGGTGATCCATCTATTATTTCTgtaagtagagtcctcaggcacatcctcactttttgggagtgcccatgact Alignment from Exonerate_protein2genome ATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGATTCCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCC acattgatccacttgccgtgagagtgggaccaaaaccgtctcacctctagATGGTGTTCACTAGTGACCCACACAAAAGCTATCTCCCTGTATGCTTTCATTCACCTGGGAAAGCAGAAATTCAGCAAGGTGATCCATCTATTATTTCTgtaagtagagtcctcaggcacatcctcactttttgggagtgcccatgact Alignment from Exonerate_coding2genome ATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGATTCCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCC acattgatccacttgccgtgagagtgggaccaaaaccgtctcacctctagATGGTGTTCACTAGTGACCCACACAAAAGCTATCTCCCTGTATGCTTTCATTCACCTGGGAAAGCAGAAATTCAGCAAGGTGATCCATCTATTATTTCTgtaagtagagtcctcaggcacatcctcactttttgggagtgcccatgact Alignment from GeneWise ATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGATTCCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCC acattgatccacttgccgtgagagtgggaccaaaaccgtctcacctctagATGGTGTTCACTAGTGACCCACACAAAAGCTATCTCCCTGTATGCTTTCATTCACCTGGGAAAGCAGAAATTCAGCAAGGTGATCCATCTATTATTTCTgtaagtagagtcctcaggcacatcctcactttttgggagtgcccatgact #### Tnks2_ID7185_6 --> 0 - 2 Original Alignment TCAACTCCATTGCATTTGGCAGCAGGATACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGGGCTGATGTCCATGCTAAAGATAAAgg tagagtatcatgtatgattactgtgtctcggctgtgcatctcctgtgcagTCAACTCCATTGCATTTGGCAGCAGGGTACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGGGCTGATGTCCATGCTAAAGATAAAgggtaaatctgcacattttgggtacagattgatcacatattgagatctggta Alignment from CESAR TCAACTCCATTGCATTTGGCAGCAGGATACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGGGCTGATGTCCATGCTAAAGATAAAgg tagagtatcatgtatgattactgtgtctcggctgtgcatctcctgtgcagTCAACTCCATTGCATTTGGCAGCAGGGTACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGGGCTGATGTCCATGCTAAAGATAAAgggtaaatctgcacattttgggtacagattgatcacatattgagatctggta Alignment from Spaln_aa2Genome TCAACTCCATTGCATTTGGCAGCAGGATACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGGGCTGATGTCCATGCTAAAGATAAAGG tagagtatcatgtatgattactgtgtctcggctgtgcatctcctgtgcagTCAACTCCATTGCATTTGGCAGCAGGGTACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGGGCTGATGTCCATGCTAAAGATAAAGGgtaaatctgcacattttgggtacagattgatcacatattgagatctggta Alignment from Spaln_nt2Genome TCAACTCCATTGCATTTGGCAGCAGGATACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGGGCTGATGTCCATGCTAAAGATAAAGG tagagtatcatgtatgattactgtgtctcggctgtgcatctcctgtgcagTCAACTCCATTGCATTTGGCAGCAGGGTACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGGGCTGATGTCCATGCTAAAGATAAAGGgtaaatctgcacattttgggtacagattgatcacatattgagatctggta Alignment from Pairagon TCAACTCCATTGCATTTGGCAGCAGGATACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGGGCTGATGTCCATGCTAAAGATAAAGG tagagtatcatgtatgattactgtgtctcggctgtgcatctcctgtgcagTCAACTCCATTGCATTTGGCAGCAGGGTACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGGGCTGATGTCCATGCTAAAGATAAAGGgtaaatctgcacattttgggtacagattgatcacatattgagatctggta Alignment from Exonerate_protein2genome TCAACTCCATTGCATTTGGCAGCAGGATACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGGGCTGATGTCCATGCTAAAGATAAAGG tagagtatcatgtatgattactgtgtctcggctgtgcatctcctgtgcagTCAACTCCATTGCATTTGGCAGCAGGGTACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGGGCTGATGTCCATGCTAAAGATAAAGGgtaaatctgcacattttgggtacagattgatcacatattgagatctggta Alignment from Exonerate_coding2genome TCAACTCCATTGCATTTGGCAGCAGGATACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGGGCTGATGTCCATGCTAAAGATAAAGG tagagtatcatgtatgattactgtgtctcggctgtgcatctcctgtgcagTCAACTCCATTGCATTTGGCAGCAGGGTACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGGGCTGATGTCCATGCTAAAGATAAAGGgtaaatctgcacattttgggtacagattgatcacatattgagatctggta Alignment from GeneWise TCAACTCCATTGCATTTGGCAGCAGGATACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGGGCTGATGTCCATGCTAAAGATAAAGG tagagtatcatgtatgattactgtgtctcggctgtgcatctcctgtgcagTCAACTCCATTGCATTTGGCAGCAGGGTACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGGGCTGATGTCCATGCTAAAGATAAAGGgtaaatctgcacattttgggtacagattgatcacatattgagatctggta #### Tnks2_ID7186_7 --> 1 - 0 Original Alignment gGATCTGGTACCACTACACAATGCCTGCTCTTACGGTCATTATGAAGTAACTGAACTTCTGGTCAAG tactcacagctctcaaaacctcgggttacattacctgctcatattttcagtGACCTGGTAACTCTACATAATGCCTGCTTGTATGGGCACTATGAAGTAACTGAACTTCTAGTTAAAgtaagatgtgtgtattagtactaaatggatgcaaaacatacaacatgtca Alignment from CESAR gGATCTGGTACCACTACACAATGCCTGCTCTTACGGTCATTATGAAGTAACTGAACTTCTGGTCAAG tactcacagctctcaaaacctcgggttacattacctgctcatattttcagtGACCTGGTAACTCTACATAATGCCTGCTTGTATGGGCACTATGAAGTAACTGAACTTCTAGTTAAAgtaagatgtgtgtattagtactaaatggatgcaaaacatacaacatgtca Alignment from Spaln_aa2Genome GGATCTGGTACCACTACACAATGCCTGCTCTTACGGTCATTATGAAGTAACTGAACTTCTGGTCAAG tactcacagctctcaaaacctcgggttacattacctgctcatattttcagTGACCTGGTAACTCTACATAATGCCTGCTTGTATGGGCACTATGAAGTAACTGAACTTCTAGTTAAAgtaagatgtgtgtattagtactaaatggatgcaaaacatacaacatgtca Alignment from Spaln_nt2Genome GGATCTGGTACCACTACACAATGCCTGCTCTTACGGTCATTATGAAGTAACTGAACTTCTGGTCAAG tactcacagctctcaaaacctcgggttacattacctgctcatattttcagTGACCTGGTAACTCTACATAATGCCTGCTTGTATGGGCACTATGAAGTAACTGAACTTCTAGTTAAAgtaagatgtgtgtattagtactaaatggatgcaaaacatacaacatgtca Alignment from Pairagon GGATCTGGTACCACTACACAATGCCTGCTCTTACGGTCATTATGAAGTAACTGAACTTCTGGTCAAG tactcacagctctcaaaacctcgggttacattacctgctcatattttcagTGACCTGGTAACTCTACATAATGCCTGCTTGTATGGGCACTATGAAGTAACTGAACTTCTAGTTAAAgtaagatgtgtgtattagtactaaatggatgcaaaacatacaacatgtca Alignment from Exonerate_protein2genome GGATCTGGTACCACTACACAATGCCTGCTCTTACGGTCATTATGAAGTAACTGAACTTCTGGTCAAG tactcacagctctcaaaacctcgggttacattacctgctcatattttcagTGACCTGGTAACTCTACATAATGCCTGCTTGTATGGGCACTATGAAGTAACTGAACTTCTAGTTAAAgtaagatgtgtgtattagtactaaatggatgcaaaacatacaacatgtca Alignment from Exonerate_coding2genome GGATCTGGTACCACTACACAATGCCTGCTCTTACGGTCATTATGAAGTAACTGAACTTCTGGTCAAG tactcacagctctcaaaacctcgggttacattacctgctcatattttcagTGACCTGGTAACTCTACATAATGCCTGCTTGTATGGGCACTATGAAGTAACTGAACTTCTAGTTAAAgtaagatgtgtgtattagtactaaatggatgcaaaacatacaacatgtca Alignment from GeneWise GGATCTGGTACCACTACACAATGCCTGCTCTTACGGTCATTATGAAGTAACTGAACTTCTGGTCAAG tactcacagctctcaaaacctcgggttacattacctgctcatattttcagTGACCTGGTAACTCTACATAATGCCTGCTTGTATGGGCACTATGAAGTAACTGAACTTCTAGTTAAAgtaagatgtgtgtattagtactaaatggatgcaaaacatacaacatgtca #### Tnks2_ID7190_11 --> 1 - 0 Original Alignment aTTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG tatgttttttctcgacaaaaatgatatgatcttcattactctttttccagaTTCTTGACACCTCTGCACGTGGCTTCCGAAAATGCACATAATGACATTGTCGAAGTAGTGGTGAAACATGAAGCGAAGgtaagggctataaccaacttctaagcatttagttggtagtatttgtttag Alignment from CESAR aTTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG tatgttttttctcgacaaaaatgatatgatcttcattactctttttccagaTTCTTGACACCTCTGCACGTGGCTTCCGAAAATGCACATAATGACATTGTCGAAGTAGTGGTGAAACATGAAGCGAAGgtaagggctataaccaacttctaagcatttagttggtagtatttgtttag Alignment from Spaln_aa2Genome ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG tatgttttttctcgacaaaaatgatatgatcttcattactctttttccagATTCTTGACACCTCTGCACGTGGCTTCCGAAAATGCACATAATGACATTGTCGAAGTAGTGGTGAAACATGAAGCGAAGgtaagggctataaccaacttctaagcatttagttggtagtatttgtttag Alignment from Spaln_nt2Genome ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG tatgttttttctcgacaaaaatgatatgatcttcattactctttttccagATTCTTGACACCTCTGCACGTGGCTTCCGAAAATGCACATAATGACATTGTCGAAGTAGTGGTGAAACATGAAGCGAAGgtaagggctataaccaacttctaagcatttagttggtagtatttgtttag Alignment from Pairagon ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG tatgttttttctcgacaaaaatgatatgatcttcattactctttttccagATTCTTGACACCTCTGCACGTGGCTTCCGAAAATGCACATAATGACATTGTCGAAGTAGTGGTGAAACATGAAGCGAAGgtaagggctataaccaacttctaagcatttagttggtagtatttgtttag Alignment from Exonerate_protein2genome ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG tatgttttttctcgacaaaaatgatatgatcttcattactctttttccagATTCTTGACACCTCTGCACGTGGCTTCCGAAAATGCACATAATGACATTGTCGAAGTAGTGGTGAAACATGAAGCGAAGgtaagggctataaccaacttctaagcatttagttggtagtatttgtttag Alignment from Exonerate_coding2genome ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG tatgttttttctcgacaaaaatgatatgatcttcattactctttttccagATTCTTGACACCTCTGCACGTGGCTTCCGAAAATGCACATAATGACATTGTCGAAGTAGTGGTGAAACATGAAGCGAAGgtaagggctataaccaacttctaagcatttagttggtagtatttgtttag Alignment from GeneWise ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG tatgttttttctcgacaaaaatgatatgatcttcattactctttttccagATTCTTGACACCTCTGCACGTGGCTTCCGAAAATGCACATAATGACATTGTCGAAGTAGTGGTGAAACATGAAGCGAAGgtaagggctataaccaacttctaagcatttagttggtagtatttgtttag #### Tnks2_ID7193_14 --> 0 - 2 Original Alignment AAACTCTGTACTGTTCAGAGTGTCAACTGCAGAGACATTGAAGGACGCCAGTCAACCCCACTCCACTTTGCAGCTGGGTACAACAGAGTGTCTGTGGTAGAATATCTGCTGCAACATGGAGCTGATGTTCATGCTAAAGACAAAgg tgcatatcagtcaacaaaaaaagccagaccccatgcctccttgtatacagAAGCTCTGCACTGTTCAGAGTGTCAACTGCAGAGACATTGAGGGACGCCAGTCCACCCCACTCCACTTCACAGCTGGGTACAATAGAGTGTCTGTGGTTGAATATCTGCTGCAACATGGAGCTGATGTCCATGCTAAAGACAAAgggtaaggaagtaacttgccacgcctggaatgtatgctgataggcaagcaaa Alignment from CESAR AAACTCTGTACTGTTCAGAGTGTCAACTGCAGAGACATTGAAGGACGCCAGTCAACCCCACTCCACTTTGCAGCTGGGTACAACAGAGTGTCTGTGGTAGAATATCTGCTGCAACATGGAGCTGATGTTCATGCTAAAGACAAAgg tgcatatcagtcaacaaaaaaagccagaccccatgcctccttgtatacagAAGCTCTGCACTGTTCAGAGTGTCAACTGCAGAGACATTGAGGGACGCCAGTCCACCCCACTCCACTTCACAGCTGGGTACAATAGAGTGTCTGTGGTTGAATATCTGCTGCAACATGGAGCTGATGTCCATGCTAAAGACAAAgggtaaggaagtaacttgccacgcctggaatgtatgctgataggcaagcaaa Alignment from Spaln_aa2Genome AAACTCTGTACTGTTCAGAGTGTCAACTGCAGAGACATTGAAGGACGCCAGTCAACCCCACTCCACTTTGCAGCTGGGTACAACAGAGTGTCTGTGGTAGAATATCTGCTGCAACATGGAGCTGATGTTCATGCTAAAGACAAAGG tgcatatcagtcaacaaaaaaagccagaccccatgcctccttgtatacagAAGCTCTGCACTGTTCAGAGTGTCAACTGCAGAGACATTGAGGGACGCCAGTCCACCCCACTCCACTTCACAGCTGGGTACAATAGAGTGTCTGTGGTTGAATATCTGCTGCAACATGGAGCTGATGTCCATGCTAAAGACAAAGGgtaaggaagtaacttgccacgcctggaatgtatgctgataggcaagcaaa Alignment from Spaln_nt2Genome AAACTCTGTACTGTTCAGAGTGTCAACTGCAGAGACATTGAAGGACGCCAGTCAACCCCACTCCACTTTGCAGCTGGGTACAACAGAGTGTCTGTGGTAGAATATCTGCTGCAACATGGAGCTGATGTTCATGCTAAAGACAAAGG tgcatatcagtcaacaaaaaaagccagaccccatgcctccttgtatacagAAGCTCTGCACTGTTCAGAGTGTCAACTGCAGAGACATTGAGGGACGCCAGTCCACCCCACTCCACTTCACAGCTGGGTACAATAGAGTGTCTGTGGTTGAATATCTGCTGCAACATGGAGCTGATGTCCATGCTAAAGACAAAGGgtaaggaagtaacttgccacgcctggaatgtatgctgataggcaagcaaa Alignment from Pairagon AAACTCTGTACTGTTCAGAGTGTCAACTGCAGAGACATTGAAGGACGCCAGTCAACCCCACTCCACTTTGCAGCTGGGTACAACAGAGTGTCTGTGGTAGAATATCTGCTGCAACATGGAGCTGATGTTCATGCTAAAGACAAAGG tgcatatcagtcaacaaaaaaagccagaccccatgcctccttgtatacagAAGCTCTGCACTGTTCAGAGTGTCAACTGCAGAGACATTGAGGGACGCCAGTCCACCCCACTCCACTTCACAGCTGGGTACAATAGAGTGTCTGTGGTTGAATATCTGCTGCAACATGGAGCTGATGTCCATGCTAAAGACAAAGGgtaaggaagtaacttgccacgcctggaatgtatgctgataggcaagcaaa Alignment from Exonerate_protein2genome AAACTCTGTACTGTTCAGAGTGTCAACTGCAGAGACATTGAAGGACGCCAGTCAACCCCACTCCACTTTGCAGCTGGGTACAACAGAGTGTCTGTGGTAGAATATCTGCTGCAACATGGAGCTGATGTTCATGCTAAAGACAAAGG tgcatatcagtcaacaaaaaaagccagaccccatgcctccttgtatacagAAGCTCTGCACTGTTCAGAGTGTCAACTGCAGAGACATTGAGGGACGCCAGTCCACCCCACTCCACTTCACAGCTGGGTACAATAGAGTGTCTGTGGTTGAATATCTGCTGCAACATGGAGCTGATGTCCATGCTAAAGACAAAGGgtaaggaagtaacttgccacgcctggaatgtatgctgataggcaagcaaa Alignment from Exonerate_coding2genome AAACTCTGTACTGTTCAGAGTGTCAACTGCAGAGACATTGAAGGACGCCAGTCAACCCCACTCCACTTTGCAGCTGGGTACAACAGAGTGTCTGTGGTAGAATATCTGCTGCAACATGGAGCTGATGTTCATGCTAAAGACAAAGG tgcatatcagtcaacaaaaaaagccagaccccatgcctccttgtatacagAAGCTCTGCACTGTTCAGAGTGTCAACTGCAGAGACATTGAGGGACGCCAGTCCACCCCACTCCACTTCACAGCTGGGTACAATAGAGTGTCTGTGGTTGAATATCTGCTGCAACATGGAGCTGATGTCCATGCTAAAGACAAAGGgtaaggaagtaacttgccacgcctggaatgtatgctgataggcaagcaaa Alignment from GeneWise AAACTCTGTACTGTTCAGAGTGTCAACTGCAGAGACATTGAAGGACGCCAGTCAACCCCACTCCACTTTGCAGCTGGGTACAACAGAGTGTCTGTGGTAGAATATCTGCTGCAACATGGAGCTGATGTTCATGCTAAAGACAAAGG tgcatatcagtcaacaaaaaaagccagaccccatgcctccttgtatacagAAGCTCTGCACTGTTCAGAGTGTCAACTGCAGAGACATTGAGGGACGCCAGTCCACCCCACTCCACTTCACAGCTGGGTACAATAGAGTGTCTGTGGTTGAATATCTGCTGCAACATGGAGCTGATGTCCATGCTAAAGACAAAGGgtaaggaagtaacttgccacgcctggaatgtatgctgataggcaagcaaa #### Tnks2_ID7195_16 --> 0 - 1 Original Alignment CATGGTGCAGACCCTACAAAGAAAAACAGAGATGGTAATACTCCTCTGGATCTTGTTAAAGATGGAGATACAGATATTCAAGATCTACTTAGAGGTGATGCAGCTTTGCTGGATGCTGCCAAGAAGGGTTGTTTAGCCAGAGTGAAGAAATTGTCTTCTCCTGATAATGTAAATTGCCGTGATACCCAAGGTCGGCATTCTACACCTTTACATTTGGCAg catgtttaagttactgcttctacaccttcttgtctgtttttgggtgccagCATGGTGCAGATCCCACAAAGAAAAACAGGGATGGAAATATTCCATTAGATCTTGTTAAAGATGGAGATACACACATTCAAGACCTACTTAGAGGTGATGCAGCTCTACTGTATGCTGCCAAAAAAGGGTGTTTAGCAAGGGTGAAGAAACTACCATCTCCTGATAATGTAAACTGTCGGGATAGCCAGGGTCAGCATTCTACACCTTTACATCTAGCAggtgaggaaggtcccgacattgtagataattgtgtaagactggtgtttttt Alignment from CESAR CATGGTGCAGACCCTACAAAGAAAAACAGAGATGGTAATACTCCTCTGGATCTTGTTAAAGATGGAGATACAGATATTCAAGATCTACTTAGAGGTGATGCAGCTTTGCTGGATGCTGCCAAGAAGGGTTGTTTAGCCAGAGTGAAGAAATTGTCTTCTCCTGATAATGTAAATTGCCGTGATACCCAAGGTCGGCATTCTACACCTTTACATTTGGCAg catgtttaagttactgcttctacaccttcttgtctgtttttgggtgccagCATGGTGCAGATCCCACAAAGAAAAACAGGGATGGAAATATTCCATTAGATCTTGTTAAAGATGGAGATACACACATTCAAGACCTACTTAGAGGTGATGCAGCTCTACTGTATGCTGCCAAAAAAGGGTGTTTAGCAAGGGTGAAGAAACTACCATCTCCTGATAATGTAAACTGTCGGGATAGCCAGGGTCAGCATTCTACACCTTTACATCTAGCAggtgaggaaggtcccgacattgtagataattgtgtaagactggtgtttttt Alignment from Spaln_aa2Genome CATGGTGCAGACCCTACAAAGAAAAACAGAGATGGTAATACTCCTCTGGATCTTGTTAAAGATGGAGATACAGATATTCAAGATCTACTTAGAGGTGATGCAGCTTTGCTGGATGCTGCCAAGAAGGGTTGTTTAGCCAGAGTGAAGAAATTGTCTTCTCCTGATAATGTAAATTGCCGTGATACCCAAGGTCGGCATTCTACACCTTTACATTTGGCAG catgtttaagttactgcttctacaccttcttgtctgtttttgggtgccagCATGGTGCAGATCCCACAAAGAAAAACAGGGATGGAAATATTCCATTAGATCTTGTTAAAGATGGAGATACACACATTCAAGACCTACTTAGAGGTGATGCAGCTCTACTGTATGCTGCCAAAAAAGGGTGTTTAGCAAGGGTGAAGAAACTACCATCTCCTGATAATGTAAACTGTCGGGATAGCCAGGGTCAGCATTCTACACCTTTACATCTAGCAGgtgaggaaggtcccgacattgtagataattgtgtaagactggtgtttttt Alignment from Spaln_nt2Genome CATGGTGCAGACCCTACAAAGAAAAACAGAGATGGTAATACTCCTCTGGATCTTGTTAAAGATGGAGATACAGATATTCAAGATCTACTTAGAGGTGATGCAGCTTTGCTGGATGCTGCCAAGAAGGGTTGTTTAGCCAGAGTGAAGAAATTGTCTTCTCCTGATAATGTAAATTGCCGTGATACCCAAGGTCGGCATTCTACACCTTTACATTTGGCAG catgtttaagttactgcttctacaccttcttgtctgtttttgggtgccagCATGGTGCAGATCCCACAAAGAAAAACAGGGATGGAAATATTCCATTAGATCTTGTTAAAGATGGAGATACACACATTCAAGACCTACTTAGAGGTGATGCAGCTCTACTGTATGCTGCCAAAAAAGGGTGTTTAGCAAGGGTGAAGAAACTACCATCTCCTGATAATGTAAACTGTCGGGATAGCCAGGGTCAGCATTCTACACCTTTACATCTAGCAGgtgaggaaggtcccgacattgtagataattgtgtaagactggtgtttttt Alignment from Pairagon CTACT-------------------------------CCAGCATGGTGCAGACCCTACAAAGAAAAACAGAGATGGTAATACTCCTCTGGATCTTGTTAAAGATGGAGATACAGATATTCAAGATCTACTTAGAGGTGATGCAGCTTTGCTGGATGCTGCCAAGAAGGGTTGTTTAGCCAGAGTGAAGAAATTGTCTTCTCCTGATAATGTAAATTGCCGTGATACCCAAGGTCGGCATTCTACACCTTTACATTTGGCAG catgtttaagTTACTGCTTCTACACCTTCTTGTCTGTTTTTGGGTGCCAGCATGGTGCAGATCCCACAAAGAAAAACAGGGATGGAAATATTCCATTAGATCTTGTTAAAGATGGAGATACACACATTCAAGACCTACTTAGAGGTGATGCAGCTCTACTGTATGCTGCCAAAAAAGGGTGTTTAGCAAGGGTGAAGAAACTACCATCTCCTGATAATGTAAACTGTCGGGATAGCCAGGGTCAGCATTCTACACCTTTACATCTAGCAGgtgaggaaggtcccgacattgtagataattgtgtaagactggtgtttttt Alignment from Exonerate_protein2genome CATGGTGCAGACCCTACAAAGAAAAACAGAGATGGTAATACTCCTCTGGATCTTGTTAAAGATGGAGATACAGATATTCAAGATCTACTTAGAGGTGATGCAGCTTTGCTGGATGCTGCCAAGAAGGGTTGTTTAGCCAGAGTGAAGAAATTGTCTTCTCCTGATAATGTAAATTGCCGTGATACCCAAGGTCGGCATTCTACACCTTTACATTTGGCAG catgtttaagttactgcttctacaccttcttgtctgtttttgggtgccagCATGGTGCAGATCCCACAAAGAAAAACAGGGATGGAAATATTCCATTAGATCTTGTTAAAGATGGAGATACACACATTCAAGACCTACTTAGAGGTGATGCAGCTCTACTGTATGCTGCCAAAAAAGGGTGTTTAGCAAGGGTGAAGAAACTACCATCTCCTGATAATGTAAACTGTCGGGATAGCCAGGGTCAGCATTCTACACCTTTACATCTAGCAGgtgaggaaggtcccgacattgtagataattgtgtaagactggtgtttttt Alignment from Exonerate_coding2genome CATGGTGCAGACCCTACAAAGAAAAACAGAGATGGTAATACTCCTCTGGATCTTGTTAAAGATGGAGATACAGATATTCAAGATCTACTTAGAGGTGATGCAGCTTTGCTGGATGCTGCCAAGAAGGGTTGTTTAGCCAGAGTGAAGAAATTGTCTTCTCCTGATAATGTAAATTGCCGTGATACCCAAGGTCGGCATTCTACACCTTTACATTTGGCAG catgtttaagttactgcttctacaccttcttgtctgtttttgggtgccagCATGGTGCAGATCCCACAAAGAAAAACAGGGATGGAAATATTCCATTAGATCTTGTTAAAGATGGAGATACACACATTCAAGACCTACTTAGAGGTGATGCAGCTCTACTGTATGCTGCCAAAAAAGGGTGTTTAGCAAGGGTGAAGAAACTACCATCTCCTGATAATGTAAACTGTCGGGATAGCCAGGGTCAGCATTCTACACCTTTACATCTAGCAGgtgaggaaggtcccgacattgtagataattgtgtaagactggtgtttttt Alignment from GeneWise CATGGTGCAGACCCTACAAAGAAAAACAGAGATGGTAATACTCCTCTGGATCTTGTTAAAGATGGAGATACAGATATTCAAGATCTACTTAGAGGTGATGCAGCTTTGCTGGATGCTGCCAAGAAGGGTTGTTTAGCCAGAGTGAAGAAATTGTCTTCTCCTGATAATGTAAATTGCCGTGATACCCAAGGTCGGCATTCTACACCTTTACATTTGGCAG catgtttaagttactgcttctacaccttcttgtctgtttttgggtgccagCATGGTGCAGATCCCACAAAGAAAAACAGGGATGGAAATATTCCATTAGATCTTGTTAAAGATGGAGATACACACATTCAAGACCTACTTAGAGGTGATGCAGCTCTACTGTATGCTGCCAAAAAAGGGTGTTTAGCAAGGGTGAAGAAACTACCATCTCCTGATAATGTAAACTGTCGGGATAGCCAGGGTCAGCATTCTACACCTTTACATCTAGCAGgtgaggaaggtcccgacattgtagataattgtgtaagactggtgtttttt #### Tnks2_ID7201_22 --> 2 - 0 Original Alignment gtCTTAATCCATATTTAACTCTAAACAACTCTGGTAGTGGAACAATTCTCATAGATCTGTCTCCTGATGATAAAGAATTTCAGTCTGTGGAAGAAGAG gcaaccaaattgttggttgagtgacggtgataacctatgtttctgaccaggtCTTAATCCCTACTTGACCCTAAATAACCCAGGCAGTGGAACTATTCTTAGAGATCAGTCTCCGGAAGATAAAGAATTTCAGTCAGTTGAAGAAGAAgtaaggatcatgcctaaagcatttgtttaacagatagatctggacggagg Alignment from CESAR gtCTTAATCCATATTTAACTCTAAACAACTCTGGTAGTGGAACAATTCTCATAGATCTGTCTCCTGATGATAAAGAATTTCAGTCTGTGGAAGAAGAG gcaaccaaattgttggttgagtgacggtgataacctatgtttctgaccaggtCTTAATCCCTACTTGACCCTAAATAACCCAGGCAGTGGAACTATTCTTAGAGATCAGTCTCCGGAAGATAAAGAATTTCAGTCAGTTGAAGAAGAAgtaaggatcatgcctaaagcatttgtttaacagatagatctggacggagg Alignment from Spaln_aa2Genome GTCTTAATCCATATTTAACTCTAAACAACTCTGGTAGTGGAACAATTCTCATAGATCTGTCTCCTGATGATAAAGAATTTCAGTCTGTGGAAGAAGAG gcaaccaaattgttggttgagtgacggtgataacctatgtttctgaccagGTCTTAATCCCTACTTGACCCTAAATAACCCAGGCAGTGGAACTATTCTTAGAGATCAGTCTCCGGAAGATAAAGAATTTCAGTCAGTTGAAGAAGAAgtaaggatcatgcctaaagcatttgtttaacagatagatctggacggagg Alignment from Spaln_nt2Genome GTCTTAATCCATATTTAACTCTAAACAACTCTGGTAGTGGAACAATTCTCATAGATCTGTCTCCTGATGATAAAGAATTTCAGTCTGTGGAAGAAGAG gcaaccaaattgttggttgagtgacggtgataacctatgtttctgaccagGTCTTAATCCCTACTTGACCCTAAATAACCCAGGCAGTGGAACTATTCTTAGAGATCAGTCTCCGGAAGATAAAGAATTTCAGTCAGTTGAAGAAGAAgtaaggatcatgcctaaagcatttgtttaacagatagatctggacggagg Alignment from Pairagon GTCTTAATCCATATTTAACTCTAAACAACTCTGGTAGTGGAACAATTCTCATAGATCTGTCTCCTGATGATAAAGAATTTCAGTCTGTGGAAGAAGAG gcaaccaaattgttggttgagtgacggtgataacctatgtttctgaccagGTCTTAATCCCTACTTGACCCTAAATAACCCAGGCAGTGGAACTATTCTTAGAGATCAGTCTCCGGAAGATAAAGAATTTCAGTCAGTTGAAGAAGAAgtaaggatcatgcctaaagcatttgtttaacagatagatctggacggagg Alignment from Exonerate_protein2genome GTCTTAATCCATATTTAACTCTAAACAACTCTGGTAGTGGAACAATTCTCATAGATCTGTCTCCTGATGATAAAGAATTTCAGTCTGTGGAAGAAGAG gcaaccaaattgttggttgagtgacggtgataacctatgtttctgaccagGTCTTAATCCCTACTTGACCCTAAATAACCCAGGCAGTGGAACTATTCTTAGAGATCAGTCTCCGGAAGATAAAGAATTTCAGTCAGTTGAAGAAGAAgtaaggatcatgcctaaagcatttgtttaacagatagatctggacggagg Alignment from Exonerate_coding2genome GTCTTAATCCATATTTAACTCTAAACAACTCTGGTAGTGGAACAATTCTCATAGATCTGTCTCCTGATGATAAAGAATTTCAGTCTGTGGAAGAAGAG gcaaccaaattgttggttgagtgacggtgataacctatgtttctgaccagGTCTTAATCCCTACTTGACCCTAAATAACCCAGGCAGTGGAACTATTCTTAGAGATCAGTCTCCGGAAGATAAAGAATTTCAGTCAGTTGAAGAAGAAgtaaggatcatgcctaaagcatttgtttaacagatagatctggacggagg Alignment from GeneWise GTCTTAATCCATATTTAACTCTAAACAACTCTGGTAGTGGAACAATTCTCATAGATCTGTCTCCTGATGATAAAGAATTTCAGTCTGTGGAAGAAGAG gcaaccaaattgttggttgagtgacggtgataacctatgtttctgaccagGTCTTAATCCCTACTTGACCCTAAATAACCCAGGCAGTGGAACTATTCTTAGAGATCAGTCTCCGGAAGATAAAGAATTTCAGTCAGTTGAAGAAGAAgtaaggatcatgcctaaagcatttgtttaacagatagatctggacggagg #### Tnks2_ID7202_23 --> 0 - 0 Original Alignment ATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCACGCAGGCGGCGTCTTCAACAGATACAACATTCTCAAG aaaccaaccagtaaataaattagtggacttataatgtcttggaatttcagATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCATGCAGGTGGCGTCTTCAACAGATACAACATTCTTATGgtgaggggtgcctggaaaccaaggcaaaaccttttccttagcactgacac Alignment from CESAR ATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCACGCAGGCGGCGTCTTCAACAGATACAACATTCTCAAG aaaccaaccagtaaataaattagtggacttataatgtcttggaatttcagATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCATGCAGGTGGCGTCTTCAACAGATACAACATTCTTATGgtgaggggtgcctggaaaccaaggcaaaaccttttccttagcactgacac Alignment from Spaln_aa2Genome ATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCACGCAGGCGGCGTCTTCAACAGATACAACATTCTCAAG aaaccaaccagtaaataaattagtggacttataatgtcttggaatttcagATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCATGCAGGTGGCGTCTTCAACAGATACAACATTCTTATGgtgaggggtgcctggaaaccaaggcaaaaccttttccttagcactgacac Alignment from Spaln_nt2Genome ATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCACGCAGGCGGCGTCTTCAACAGATACAACATTCTCAAG aaaccaaccagtaaataaattagtggacttataatgtcttggaatttcagATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCATGCAGGTGGCGTCTTCAACAGATACAACATTCTTATGgtgaggggtgcctggaaaccaaggcaaaaccttttccttagcactgacac Alignment from Pairagon ATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCACGCAGGCGGCGTCTTCAACAGATACAACATTCTCAAG aaaccaaccagtaaataaattagtggacttataatgtcttggaatttcagATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCATGCAGGTGGCGTCTTCAACAGATACAACATTCTTATGgtgaggggtgcctggaaaccaaggcaaaaccttttccttagcactgacac Alignment from Exonerate_protein2genome ATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCACGCAGGCGGCGTCTTCAACAGATACAACATTCTCAAG aaaccaaccagtaaataaattagtggacttataatgtcttggaatttcagATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCATGCAGGTGGCGTCTTCAACAGATACAACATTCTTATGgtgaggggtgcctggaaaccaaggcaaaaccttttccttagcactgacac Alignment from Exonerate_coding2genome ATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCACGCAGGCGGCGTCTTCAACAGATACAACATTCTCAAG aaaccaaccagtaaataaattagtggacttataatgtcttggaatttcagATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCATGCAGGTGGCGTCTTCAACAGATACAACATTCTTATGgtgaggggtgcctggaaaccaaggcaaaaccttttccttagcactgacac Alignment from GeneWise ATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCACGCAGGCGGCGTCTTCAACAGATACAACATTCTCAAG aaaccaaccagtaaataaattagtggacttataatgtcttggaatttcagATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCATGCAGGTGGCGTCTTCAACAGATACAACATTCTTATGgtgaggggtgcctggaaaccaaggcaaaaccttttccttagcactgacac #### Tnks2_ID7203_24 --> 0 - 1 Original Alignment ATTCAGAAGGTTTGTAACAAGAAATTGTGGGAAAGATATACACACCGGAGAAAAGAAGTTTCTGAAGAAAACCACAACCATGCAAACGAAAGGATGTTATTTCATg tgtagataaatcaggaaaatgagaatgaccttcctgctctcttcttacagATTCAAAAAGGATGTAATAAAAAATTGTGGGAAAGATACTCACACCGGAGAAAAGAAGTCTCTGAAGAGAACCACAACCATGCAAATGAGCGGATGTTATTTCATggtgagtcttgccatctctctaaggttgcagttaacattcccatataggaa Alignment from CESAR ATTCAGAAGGTTTGTAACAAGAAATTGTGGGAAAGATATACACACCGGAGAAAAGAAGTTTCTGAAGAAAACCACAACCATGCAAACGAAAGGATGTTATTTCATg tgtagataaatcaggaaaatgagaatgaccttcctgctctcttcttacagATTCAAAAAGGATGTAATAAAAAATTGTGGGAAAGATACTCACACCGGAGAAAAGAAGTCTCTGAAGAGAACCACAACCATGCAAATGAGCGGATGTTATTTCATggtgagtcttgccatctctctaaggttgcagttaacattcccatataggaa Alignment from Spaln_aa2Genome ATTCAGAAGGTTTGTAACAAGAAATTGTGGGAAAGATATACACACCGGAGAAAAGAAGTTTCTGAAGAAAACCACAACCATGCAAACGAAAGGATGTTATTTCATG tgtagataaatcaggaaaatgagaatgaccttcctgctctcttcttacagATTCAAAAAGGATGTAATAAAAAATTGTGGGAAAGATACTCACACCGGAGAAAAGAAGTCTCTGAAGAGAACCACAACCATGCAAATGAGCGGATGTTATTTCATGgtgagtcttgccatctctctaaggttgcagttaacattcccatataggaa Alignment from Spaln_nt2Genome ATTCAGAAGGTTTGTAACAAGAAATTGTGGGAAAGATATACACACCGGAGAAAAGAAGTTTCTGAAGAAAACCACAACCATGCAAACGAAAGGATGTTATTTCATG tgtagataaatcaggaaaatgagaatgaccttcctgctctcttcttacagATTCAAAAAGGATGTAATAAAAAATTGTGGGAAAGATACTCACACCGGAGAAAAGAAGTCTCTGAAGAGAACCACAACCATGCAAATGAGCGGATGTTATTTCATGgtgagtcttgccatctctctaaggttgcagttaacattcccatataggaa Alignment from Pairagon ATTCAGAAGGTTTGTAACAAGAAATTGTGGGAAAGATATACACACCGGAGAAAAGAAGTTTCTGAAGAAAACCACAACCATGCAAACGAAAGGATGTTATTTCATG tgtagataaatcaggaaaatgagaatgaccttcctgctctcttcttacagATTCAAAAAGGATGTAATAAAAAATTGTGGGAAAGATACTCACACCGGAGAAAAGAAGTCTCTGAAGAGAACCACAACCATGCAAATGAGCGGATGTTATTTCATGgtgagtcttgccatctctctaaggttgcagttaacattcccatataggaa Alignment from Exonerate_protein2genome ATTCAGAAGGTTTGTAACAAGAAATTGTGGGAAAGATATACACACCGGAGAAAAGAAGTTTCTGAAGAAAACCACAACCATGCAAACGAAAGGATGTTATTTCATG tgtagataaatcaggaaaatgagaatgaccttcctgctctcttcttacagATTCAAAAAGGATGTAATAAAAAATTGTGGGAAAGATACTCACACCGGAGAAAAGAAGTCTCTGAAGAGAACCACAACCATGCAAATGAGCGGATGTTATTTCATGgtgagtcttgccatctctctaaggttgcagttaacattcccatataggaa Alignment from Exonerate_coding2genome ATTCAGAAGGTTTGTAACAAGAAATTGTGGGAAAGATATACACACCGGAGAAAAGAAGTTTCTGAAGAAAACCACAACCATGCAAACGAAAGGATGTTATTTCATG tgtagataaatcaggaaaatgagaatgaccttcctgctctcttcttacagATTCAAAAAGGATGTAATAAAAAATTGTGGGAAAGATACTCACACCGGAGAAAAGAAGTCTCTGAAGAGAACCACAACCATGCAAATGAGCGGATGTTATTTCATGgtgagtcttgccatctctctaaggttgcagttaacattcccatataggaa Alignment from GeneWise ATTCAGAAGGTTTGTAACAAGAAATTGTGGGAAAGATATACACACCGGAGAAAAGAAGTTTCTGAAGAAAACCACAACCATGCAAACGAAAGGATGTTATTTCATG tgtagataaatcaggaaaatgagaatgaccttcctgctctcttcttacagATTCAAAAAGGATGTAATAAAAAATTGTGGGAAAGATACTCACACCGGAGAAAAGAAGTCTCTGAAGAGAACCACAACCATGCAAATGAGCGGATGTTATTTCATGgtgagtcttgccatctctctaaggttgcagttaacattcccatataggaa #### Trpm3_ID5058_14 --> 0 - 0 Original Alignment CCCAAAGCCTTGAAACTGCTGGGAATGGAG taccatggctaaagtactaacaactttgccctcttctctcttgctcacagCCCAAAGCCTTAAAACTTCTGGGGATGGAGgtaagtgattttctaaaattatacagtcacttagagatgtgttccagtgg Alignment from CESAR CCCAAAGCCTTGAAACTGCTGGGAATGGAG taccatggctaaagtactaacaactttgccctcttctctcttgctcacagCCCAAAGCCTTAAAACTTCTGGGGATGGAGgtaagtgattttctaaaattatacagtcacttagagatgtgttccagtgg Alignment from Spaln_aa2Genome CCCAAAGCCTTGAAACTGCTGGGAATGGAG taccatggctaaagtactaacaactttgccctcttctctcttgctcacagCCCAAAGCCTTAAAACTTCTGGGGATGGAGgtaagtgattttctaaaattatacagtcacttagagatgtgttccagtgg Alignment from Spaln_nt2Genome CCCAAAGCCTTGAAACTGCTGGGAATGGAG taccatggctaaagtactaacaactttgccctcttctctcttgctcacagCCCAAAGCCTTAAAACTTCTGGGGATGGAGgtaagtgattttctaaaattatacagtcacttagagatgtgttccagtgg Alignment from Pairagon CCCAAAGCCTTGAAACTGCTGGGAATGGAG taccatggctaaagtactaacaactttgccctcttctctcttgctcacagCCCAAAGCCTTAAAACTTCTGGGGATGGAGgtaagtgattttctaaaattatacagtcacttagagatgtgttccagtgg Alignment from Exonerate_protein2genome CCCAAAGCCTTGAAACTGCTGGGAATGGAG taccatggctaaagtactaacaactttgccctcttctctcttgctcacagCCCAAAGCCTTAAAACTTCTGGGGATGGAGgtaagtgattttctaaaattatacagtcacttagagatgtgttccagtgg Alignment from Exonerate_coding2genome CCCAAAGCCTTGAAACTGCTGGGAATGGAG taccatggctaaagtactaacaactttgccctcttctctcttgctcacagCCCAAAGCCTTAAAACTTCTGGGGATGGAGgtaagtgattttctaaaattatacagtcacttagagatgtgttccagtgg Alignment from GeneWise CCCAAAGCCTTGAAACTGCTGGGAATGGAG taccatggctaaagtactaacaactttgccctcttctctcttgctcacagCCCAAAGCCTTAAAACTTCTGGGGATGGAGgtaagtgattttctaaaattatacagtcacttagagatgtgttccagtgg #### Trpm3_ID5061_17 --> 0 - 0 Original Alignment GTAATTCTGGGAATTCTACTTCCTCCTTCAATTCTCAGCTTGGAGTTCAAGAACAAAGATGACATGCCCTATATGACTCAGGCCCAGGAGATTCATCTCCAAGAGAAGGAGCCGGAGGAGCCAGAGAAGCCCACAAAGGAAAAAGATGAAGAGGACATGGAGCTAACA atacactgacattgaacgaggctcctaattttgtgttttgcctcttgtagGTAATTCTGGGAATTTTAGTTACGCCTTCAATTCTCAGTTTGGAGCTCAAGAATAAGGATGACATGCCCCATATGACCCAAGCACAGGAAATTCATCTCCAAGAGAAGGAGCCAGAGGAGCCAGAGAAGCCAACCAAAGAGAAAGATGAAGAAGACATGGAACTAAGTgtgagcgaacctttcacatttacctttacaggtggacttttgttagagat Alignment from CESAR GTAATTCTGGGAATTCTACTTCCTCCTTCAATTCTCAGCTTGGAGTTCAAGAACAAAGATGACATGCCCTATATGACTCAGGCCCAGGAGATTCATCTCCAAGAGAAGGAGCCGGAGGAGCCAGAGAAGCCCACAAAGGAAAAAGATGAAGAGGACATGGAGCTAACA atacactgacattgaacgaggctcctaattttgtgttttgcctcttgtagGTAATTCTGGGAATTTTAGTTACGCCTTCAATTCTCAGTTTGGAGCTCAAGAATAAGGATGACATGCCCCATATGACCCAAGCACAGGAAATTCATCTCCAAGAGAAGGAGCCAGAGGAGCCAGAGAAGCCAACCAAAGAGAAAGATGAAGAAGACATGGAACTAAGTgtgagcgaacctttcacatttacctttacaggtggacttttgttagagat Alignment from Spaln_aa2Genome GTAATTCTGGGAATTCTACTTCCTCCTTCAATTCTCAGCTTGGAGTTCAAGAACAAAGATGACATGCCCTATATGACTCAGGCCCAGGAGATTCATCTCCAAGAGAAGGAGCCGGAGGAGCCAGAGAAGCCCACAAAGGAAAAAGATGAAGAGGACATGGAGCTAACA atacactgacattgaacgaggctcctaattttgtgttttgcctcttgtagGTAATTCTGGGAATTTTAGTTACGCCTTCAATTCTCAGTTTGGAGCTCAAGAATAAGGATGACATGCCCCATATGACCCAAGCACAGGAAATTCATCTCCAAGAGAAGGAGCCAGAGGAGCCAGAGAAGCCAACCAAAGAGAAAGATGAAGAAGACATGGAACTAAGTgtgagcgaacctttcacatttacctttacaggtggacttttgttagagat Alignment from Spaln_nt2Genome GTAATTCTGGGAATTCTACTTCCTCCTTCAATTCTCAGCTTGGAGTTCAAGAACAAAGATGACATGCCCTATATGACTCAGGCCCAGGAGATTCATCTCCAAGAGAAGGAGCCGGAGGAGCCAGAGAAGCCCACAAAGGAAAAAGATGAAGAGGACATGGAGCTAACA atacactgacattgaacgaggctcctaattttgtgttttgcctcttgtagGTAATTCTGGGAATTTTAGTTACGCCTTCAATTCTCAGTTTGGAGCTCAAGAATAAGGATGACATGCCCCATATGACCCAAGCACAGGAAATTCATCTCCAAGAGAAGGAGCCAGAGGAGCCAGAGAAGCCAACCAAAGAGAAAGATGAAGAAGACATGGAACTAAGTgtgagcgaacctttcacatttacctttacaggtggacttttgttagagat Alignment from Pairagon GTAATTCTGGGAATTCTACTTCCTCCTTCAATTCTCAGCTTGGAGTTCAAGAACAAAGATGACATGCCCTATATGACTCAGGCCCAGGAGATTCATCTCCAAGAGAAGGAGCCGGAGGAGCCAGAGAAGCCCACAAAGGAAAAAGATGAAGAGGACATGGAGCTAACA atacactgacattgaacgaggctcctaattttgtgttttgcctcttgtagGTAATTCTGGGAATTTTAGTTACGCCTTCAATTCTCAGTTTGGAGCTCAAGAATAAGGATGACATGCCCCATATGACCCAAGCACAGGAAATTCATCTCCAAGAGAAGGAGCCAGAGGAGCCAGAGAAGCCAACCAAAGAGAAAGATGAAGAAGACATGGAACTAAGTgtgagcgaacctttcacatttacctttacaggtggacttttgttagagat Alignment from Exonerate_protein2genome GTAATTCTGGGAATTCTACTTCCTCCTTCAATTCTCAGCTTGGAGTTCAAGAACAAAGATGACATGCCCTATATGACTCAGGCCCAGGAGATTCATCTCCAAGAGAAGGAGCCGGAGGAGCCAGAGAAGCCCACAAAGGAAAAAGATGAAGAGGACATGGAGCTAACA atacactgacattgaacgaggctcctaattttgtgttttgcctcttgtagGTAATTCTGGGAATTTTAGTTACGCCTTCAATTCTCAGTTTGGAGCTCAAGAATAAGGATGACATGCCCCATATGACCCAAGCACAGGAAATTCATCTCCAAGAGAAGGAGCCAGAGGAGCCAGAGAAGCCAACCAAAGAGAAAGATGAAGAAGACATGGAACTAAGTgtgagcgaacctttcacatttacctttacaggtggacttttgttagagat Alignment from Exonerate_coding2genome GTAATTCTGGGAATTCTACTTCCTCCTTCAATTCTCAGCTTGGAGTTCAAGAACAAAGATGACATGCCCTATATGACTCAGGCCCAGGAGATTCATCTCCAAGAGAAGGAGCCGGAGGAGCCAGAGAAGCCCACAAAGGAAAAAGATGAAGAGGACATGGAGCTAACA atacactgacattgaacgaggctcctaattttgtgttttgcctcttgtagGTAATTCTGGGAATTTTAGTTACGCCTTCAATTCTCAGTTTGGAGCTCAAGAATAAGGATGACATGCCCCATATGACCCAAGCACAGGAAATTCATCTCCAAGAGAAGGAGCCAGAGGAGCCAGAGAAGCCAACCAAAGAGAAAGATGAAGAAGACATGGAACTAAGTgtgagcgaacctttcacatttacctttacaggtggacttttgttagagat Alignment from GeneWise GTAATTCTGGGAATTCTACTTCCTCCTTCAATTCTCAGCTTGGAGTTCAAGAACAAAGATGACATGCCCTATATGACTCAGGCCCAGGAGATTCATCTCCAAGAGAAGGAGCCGGAGGAGCCAGAGAAGCCCACAAAGGAAAAAGATGAAGAGGACATGGAGCTAACA atacactgacattgaacgaggctcctaattttgtgttttgcctcttgtagGTAATTCTGGGAATTTTAGTTACGCCTTCAATTCTCAGTTTGGAGCTCAAGAATAAGGATGACATGCCCCATATGACCCAAGCACAGGAAATTCATCTCCAAGAGAAGGAGCCAGAGGAGCCAGAGAAGCCAACCAAAGAGAAAGATGAAGAAGACATGGAACTAAGTgtgagcgaacctttcacatttacctttacaggtggacttttgttagagat #### Trpm6_ID4467_5 --> 0 - 1 Original Alignment TACATTAGAACTTCTTGGGATACAAAATCGGATCATCTGTTGCACTTAATGCTGAAAGAGTGGAATATGGAACTGCCAAAGCTTGTGATCTCCGTCCATGGGGGTCTTCAGAACTTCAAGATATCCTCCAAGCTCAAAGAGACCTTCAGCCAGGGTCTGGTCAAAGCTGCAGAGACCACAGGAGCATGGATAATTACAGAAGGCATAAACTCAg cacctactctgtgcatatatatgtgctctatgtgtctctgccatacctagTACATAAGAACTTCTTGGGATGCAATGTCAGATCGCCTACTGCACTTAATGCTGAAAGAGTTGAATATGGAGTTACCAAAACTTGTAATCCCTGTGCAAGGGGGGCTTCGGAATTTTAATATATCTGCCAAGTTCAAGGAATCATTCAGACAGGGCCTC---AAAGCTACAGAGACCACAGGAGCATTGATACTTACAGAGAGCATAAACTCAggtaagattgaggtgagttctcaaaactaattcttcatataaggtataagg Alignment from CESAR TACATTAGAACTTCTTGGGATACAAAATCGGATCATCTGTTGCACTTAATGCTGAAAGAGTGGAATATGGAACTGCCAAAGCTTGTGATCTCCGTCCATGGGGGTCTTCAGAACTTCAAGATATCCTCCAAGCTCAAAGAGACCTTCAGCCAGGGTCTGGTCAAAGCTGCAGAGACCACAGGAGCATGGATAATTACAGAAGGCATAAACTCAg cacctactctgtgcatatatatgtgctctatgtgtctctgccatacctagTACATAAGAACTTCTTGGGATGCAATGTCAGATCGCCTACTGCACTTAATGCTGAAAGAGTTGAATATGGAGTTACCAAAACTTGTAATCCCTGTGCAAGGGGGGCTTCGGAATTTTAATATATCTGCCAAGTTCAAGGAATCATTCAGACAGGGCCTC---AAAGCTACAGAGACCACAGGAGCATTGATACTTACAGAGAGCATAAACTCAggtaagattgaggtgagttctcaaaactaattcttcatataaggtataagg Alignment from Spaln_aa2Genome TACATTAGAACTTCTTGGGATACAAAATCGGATCATCTGTTGCACTTAATGCTGAAAGAGTGGAATATGGAACTGCCAAAGCTTGTGATCTCCGTCCATGGGGGTCTTCAGAACTTCAAGATATCCTCCAAGCTCAAAGAGACCTTCAGCCAGGGTCTGGTCAAAGCTGCAGAGACCACAGGAGCATGGATAATTACAGAAGGCATAAAC---- cacctactctgtgcatatatatgtgctctatgtgtctctgccatacctagTACATAAGAACTTCTTGGGATGCAATGTCAGATCGCCTACTGCACTTAATGCTGAAAGAGTTGAATATGGAGTTACCAAAACTTGTAATCCCTGTGCAAGGGGGGCTTCGGAATTTTAATATATCTGCCAAGTTCAAGGAATCATTCAGACAGGGCCTC---AAAGCTACAGAGACCACAGGAGCATTGATACTTACAGAGAGCATAAACTCAGgtaagattgaggtgagttctcaaaactaattcttcatataaggtataagg Alignment from Spaln_nt2Genome TACATTAGAACTTCTTGGGATACAAAATCGGATCATCTGTTGCACTTAATGCTGAAAGAGTGGAATATGGAACTGCCAAAGCTTGTGATCTCCGTCCATGGGGGTCTTCAGAACTTCAAGATATCCTCCAAGCTCAAAGAGACCTTCAGCCAGGGTCTGGTCAAAGCTGCAGAGACCACAGGAGCATGGATAATTACAGAAGGCATAAACTCA- cacctactctgtgcatatatatgtgctctatgtgtctctgccatacctagTACATAAGAACTTCTTGGGATGCAATGTCAGATCGCCTACTGCACTTAATGCTGAAAGAGTTGAATATGGAGTTACCAAAACTTGTAATCCCTGTGCAAGGGGGGCTTCGGAATTTTAATATATCTGCCAAGTTCAAGGAATCATTCAGACAGGGCC---TCAAAGCTACAGAGACCACAGGAGCATTGATACTTACAGAGAGCATAAACTCAGgtaagattgaggtgagttctcaaaactaattcttcatataaggtataagg Alignment from Pairagon TACATTAGAACTTCTTGGGATACAAAATCGGATCATCTGTTGCACTTAATGCTGAAAGAGTGGAATATGGAACTGCCAAAGCTTGTGATCTCCGTCCATGGGGGTCTTCAGAACTTCAAGATATCCTCCAAGCTCAAAGAGACCTTCAGCCAGGGTCTGGTCAAAGCTGCAGAGACCACAGGAGCATGGATAATTACAGAAGGCATAAACTCAG cacctactctgtgcatatatatgtgctctatgtgtctctgccatacctagTACATAAGAACTTCTTGGGATGCAATGTCAGATCGCCTACTGCACTTAATGCTGAAAGAGTTGAATATGGAGTTACCAAAACTTGTAATCCCTGTGCAAGGGGGGCTTCGGAATTTTAATATATCTGCCAAGTTCAAGGAATCATTCAGACAGGGCC---TCAAAGCTACAGAGACCACAGGAGCATTGATACTTACAGAGAGCATAAACTCAGgtaagattgaggtgagttctcaaaactaattcttcatataaggtataagg Alignment from Exonerate_protein2genome TACATTAGAACTTCTTGGGATACAAAATCGGATCATCTGTTGCACTTAATGCTGAAAGAGTGGAATATGGAACTGCCAAAGCTTGTGATCTCCGTCCATGGGGGTCTTCAGAACTTCAAGATATCCTCCAAGCTCAAAGAGACCTTCAGCCAGGGTCTGGTCAAAGCTGCAGAGACCACAGGAGCATGGATAATTACAGAAGGCATAAACTCAG cacctactctgtgcatatatatgtgctctatgtgtctctgccatacctagTACATAAGAACTTCTTGGGATGCAATGTCAGATCGCCTACTGCACTTAATGCTGAAAGAGTTGAATATGGAGTTACCAAAACTTGTAATCCCTGTGCAAGGGGGGCTTCGGAATTTTAATATATCTGCCAAGTTCAAGGAATCATTCAGACAGGGCCTC---AAAGCTACAGAGACCACAGGAGCATTGATACTTACAGAGAGCATAAACTCAGgtaagattgaggtgagttctcaaaactaattcttcatataaggtataagg Alignment from Exonerate_coding2genome TACATTAGAACTTCTTGGGATACAAAATCGGATCATCTGTTGCACTTAATGCTGAAAGAGTGGAATATGGAACTGCCAAAGCTTGTGATCTCCGTCCATGGGGGTCTTCAGAACTTCAAGATATCCTCCAAGCTCAAAGAGACCTTCAGCCAGGGTCTGGTCAAAGCTGCAGAGACCACAGGAGCATGGATAATTACAGAAGGCATAAACTCAG cacctactctgtgcatatatatgtgctctatgtgtctctgccatacctagTACATAAGAACTTCTTGGGATGCAATGTCAGATCGCCTACTGCACTTAATGCTGAAAGAGTTGAATATGGAGTTACCAAAACTTGTAATCCCTGTGCAAGGGGGGCTTCGGAATTTTAATATATCTGCCAAGTTCAAGGAATCATTCAGACAGGGCCTC---AAAGCTACAGAGACCACAGGAGCATTGATACTTACAGAGAGCATAAACTCAGgtaagattgaggtgagttctcaaaactaattcttcatataaggtataagg Alignment from GeneWise TACATTAGAACTTCTTGGGATACAAAATCGGATCATCTGTTGCACTTAATGCTGAAAGAGTGGAATATGGAACTGCCAAAGCTTGTGATCTCCGTCCATGGGGGTCTTCAGAACTTCAAGATATCCTCCAAGCTCAAAGAGACCTTCAGCCAGGGTCTGGTCAAAGCTGCAGAGACCACAGGAGCATGGATAATTACAGAAGGCATAAACTCA- cacctactctgtgcatatatatgtgctctatgtgtctctgccatacctagTACATAAGAACTTCTTGGGATGCAATGTCAGATCGCCTACTGCACTTAATGCTGAAAGAGTTGAATATGGAGTTACCAAAACTTGTAATCCCTGTGCAAGGGGGGCTTCGGAATTTTAATATATCTGCCAAGTTCAAGGAATCATTCAGACAGGGCCTC---AAAGCTACAGAGACCACAGGAGCATTGATACTTACAGAGAGCATAAACTCAGgtaagattgaggtgagttctcaaaactaattcttcatataaggtataagg #### Trpm6_ID4471_9 --> 1 - 0 Original Alignment gATTCTACGCCCTCAGGTGAAAGAAGAGCTCTTCTGTTTGATTCAGAACATGTTC---------------AACTTTAGCCTTAGACAGTCTAAGCACCTTTTCCAAATTCTAATGGAGTGCATGGTACACAAG---GATTCT ccaaaaagctggttcaattcttcataactcactccgatatatttttgcagcATCCTACGCCATCAGGTGAAGGTAGAGCTCTTTTATCTGACCCAGAACATGTTTATTTCCTCAGTAACGTACTTTAGCCTTAGGCAGCCGAAGCACCTGTTCCAGATTATAATGGAGTGCATGGTACATAAAGAAGACTCTgtgagtaggttcatggctaaagggacagaactttggtaagcctcaacaac Alignment from CESAR gATTCTACGCCCTCAGGTGAAAGAAGAGCTCTTCTGTTTGATTCAGAACATGTTC---------------AACTTTAGCCTTAGACAGTCTAAGCACCTTTTCCAAATTCTAATGGAGTGCATGGTACACAAG---GATTCT ccaaaaagctggttcaattcttcataactcactccgatatatttttgcagcATCCTACGCCATCAGGTGAAGGTAGAGCTCTTTTATCTGACCCAGAACATGTTTATTTCCTCAGTAACGTACTTTAGCCTTAGGCAGCCGAAGCACCTGTTCCAGATTATAATGGAGTGCATGGTACATAAAGAAGACTCTgtgagtaggttcatggctaaagggacagaactttggtaagcctcaacaac Alignment from Spaln_aa2Genome GGATTCTACGCCCTCAGGTGAAAGAAGAGCTCTTCTGTTTGATTCAGAACATGTTC---------------AACTTTAGCCTTAGACAGTCTAAGCACCTTTTCCAAATTCTAATGGAGTGCATGGTACACAAG---GATTC ccaaaaagctggttcaattcttcataactcactccgatatatttttgcagCATCCTACGCCATCAGGTGAAGGTAGAGCTCTTTTATCTGACCCAGAACATGTTTATTTCCTCAGTAACGTACTTTAGCCTTAGGCAGCCGAAGCACCTGTTCCAGATTATAATGGAGTGCATGGTACATAAAGAAGACTCTgtgagtaggttcatggctaaagggacagaactttggtaagcctcaacaac Alignment from Spaln_nt2Genome GATTCTACGCCCTCAGGTGAAAGAAGAGCTCTTCTGTTTGATTCAGAACATGTTCA---------------ACTTTAGCCTTAGACAGTCTAAGCACCTTTTCCAAATTCTAATGGAGTGCATGGTACACAAGGAT---TCT ccaaaaagctggttcaattcttcataactcactccgatatatttttgcagCATCCTACGCCATCAGGTGAAGGTAGAGCTCTTTTATCTGACCCAGAACATGTTTATTTCCTCAGTAACGTACTTTAGCCTTAGGCAGCCGAAGCACCTGTTCCAGATTATAATGGAGTGCATGGTACATAAAGAAGACTCTgtgagtaggttcatggctaaagggacagaactttggtaagcctcaacaac Alignment from Pairagon GATTCTACGCCCTCAGGTGAAAGAAGAGCTCTTCTGTTTGATTCAGAACATGTTCA---------------ACTTTAGCCTTAGACAGTCTAAGCACCTTTTCCAAATTCTAATGGAGTGCATGGTACACA---AGGATTCT ccaaaaagctggttcaattcttcataactcactccgatatatttttgcagCATCCTACGCCATCAGGTGAAGGTAGAGCTCTTTTATCTGACCCAGAACATGTTTATTTCCTCAGTAACGTACTTTAGCCTTAGGCAGCCGAAGCACCTGTTCCAGATTATAATGGAGTGCATGGTACATAAAGAAGACTCTgtgagtaggttcatggctaaagggacagaactttggtaagcctcaacaac Alignment from Exonerate_protein2genome GATTCTACGCCCTCAGGTGAAAGAAGAGCTCTTCTGTTTGATTCAGAACATGTTCAACTTTAGCCTT---------------AGACAGTCTAAGCACCTTTTCCAAATTCTAATGGAGTGCATGGTACACAAG---GATTCT ccaaaaagctggttcaattcttcataactcactccgatatatttttgcagCATCCTACGCCATCAGGTGAAGGTAGAGCTCTTTTATCTGACCCAGAACATGTTTATTTCCTCAGTAACGTACTTTAGCCTTAGGCAGCCGAAGCACCTGTTCCAGATTATAATGGAGTGCATGGTACATAAAGAAGACTCTgtgagtaggttcatggctaaagggacagaactttggtaagcctcaacaac Alignment from Exonerate_coding2genome GATTCTACGCCCTCAGGTGAAAGAAGAGCTCTTCTGTTTGATTCAGAACATGTTCAACTTTAGCCTT---------------AGACAGTCTAAGCACCTTTTCCAAATTCTAATGGAGTGCATGGTACACAAG---GATTCT ccaaaaagctggttcaattcttcataactcactccgatatatttttgcagCATCCTACGCCATCAGGTGAAGGTAGAGCTCTTTTATCTGACCCAGAACATGTTTATTTCCTCAGTAACGTACTTTAGCCTTAGGCAGCCGAAGCACCTGTTCCAGATTATAATGGAGTGCATGGTACATAAAGAAGACTCTgtgagtaggttcatggctaaagggacagaactttggtaagcctcaacaac Alignment from GeneWise GATTCTACGCCCTCAGGTGAAAGAAGAGCTCTTCTGTTTGATTCAGAACATGTTC---------------AACTTTAGCCTTAGACAGTCTAAGCACCTTTTCCAAATTCTAATGGAGTGCATGGTACACAAG---GATTCT ccaaaaagctggttcaattcttcataactcactccgatatatttttgcagCATCCTACGCCATCAGGTGAAGGTAGAGCTCTTTTATCTGACCCAGAACATGTTTATTTCCTCAGTAACGTACTTTAGCCTTAGGCAGCCGAAGCACCTGTTCCAGATTATAATGGAGTGCATGGTACATAAAGAAGACTCTgtgagtaggttcatggctaaagggacagaactttggtaagcctcaacaac #### Trpm6_ID4472_10 --> 0 - 1 Original Alignment ATCACCATATTTGATGCTGATTCTGAAGAGCACCAAGATCTTGATTTGGCCATCCTCACGGCTCTACTGAAGg taatgtcaaatcaatagtactgtgcacccatttttatttttatgtgtcagATTACTATATTTGATGCTGATTCAAAAGAGCACCAGGATCTTGATTTAGCAATCCTCACTGCCCTTCTCAAAggtaagggctgatcttcacttctccctttcttccttctgggtcttaatttt Alignment from CESAR ATCACCATATTTGATGCTGATTCTGAAGAGCACCAAGATCTTGATTTGGCCATCCTCACGGCTCTACTGAAGg taatgtcaaatcaatagtactgtgcacccatttttatttttatgtgtcagATTACTATATTTGATGCTGATTCAAAAGAGCACCAGGATCTTGATTTAGCAATCCTCACTGCCCTTCTCAAAggtaagggctgatcttcacttctccctttcttccttctgggtcttaatttt Alignment from Spaln_aa2Genome ATCACCATATTTGATGCTGATTCTGAAGAGCACCAAGATCTTGATTTGGCCATCCTCACGGCTCTACTGAAGG taatgtcaaatcaatagtactgtgcacccatttttatttttatgtgtcagATTACTATATTTGATGCTGATTCAAAAGAGCACCAGGATCTTGATTTAGCAATCCTCACTGCCCTTCTCAAAGgtaagggctgatcttcacttctccctttcttccttctgggtcttaatttt Alignment from Spaln_nt2Genome ATCACCATATTTGATGCTGATTCTGAAGAGCACCAAGATCTTGATTTGGCCATCCTCACGGCTCTACTGAAGG taatgtcaaatcaatagtactgtgcacccatttttatttttatgtgtcagATTACTATATTTGATGCTGATTCAAAAGAGCACCAGGATCTTGATTTAGCAATCCTCACTGCCCTTCTCAAAGgtaagggctgatcttcacttctccctttcttccttctgggtcttaatttt Alignment from Pairagon ATCACCATATTTGATGCTGATTCTGAAGAGCACCAAGATCTTGATTTGGCCATCCTCACGGCTCTACTGAAGG taatgtcaaatcaatagtactgtgcacccatttttatttttatgtgtcagATTACTATATTTGATGCTGATTCAAAAGAGCACCAGGATCTTGATTTAGCAATCCTCACTGCCCTTCTCAAAGgtaagggctgatcttcacttctccctttcttccttctgggtcttaatttt Alignment from Exonerate_protein2genome ATCACCATATTTGATGCTGATTCTGAAGAGCACCAAGATCTTGATTTGGCCATCCTCACGGCTCTACTGAAGG taatgtcaaatcaatagtactgtgcacccatttttatttttatgtgtcagATTACTATATTTGATGCTGATTCAAAAGAGCACCAGGATCTTGATTTAGCAATCCTCACTGCCCTTCTCAAAGgtaagggctgatcttcacttctccctttcttccttctgggtcttaatttt Alignment from Exonerate_coding2genome ATCACCATATTTGATGCTGATTCTGAAGAGCACCAAGATCTTGATTTGGCCATCCTCACGGCTCTACTGAAGG taatgtcaaatcaatagtactgtgcacccatttttatttttatgtgtcagATTACTATATTTGATGCTGATTCAAAAGAGCACCAGGATCTTGATTTAGCAATCCTCACTGCCCTTCTCAAAGgtaagggctgatcttcacttctccctttcttccttctgggtcttaatttt Alignment from GeneWise ATCACCATATTTGATGCTGATTCTGAAGAGCACCAAGATCTTGATTTGGCCATCCTCACGGCTCTACTGAAGG taatgtcaaatcaatagtactgtgcacccatttttatttttatgtgtcagATTACTATATTTGATGCTGATTCAAAAGAGCACCAGGATCTTGATTTAGCAATCCTCACTGCCCTTCTCAAAGgtaagggctgatcttcacttctccctttcttccttctgggtcttaatttt #### Trpm6_ID4474_12 --> 0 - 0 Original Alignment CCTGGTGCTCTAGAACAAGCAATGCTAGATGCTTTAGTGATGGATCGAGTGGACTTTGTGAAACTTTTGATAGAGAATGGGGTGAACCTCCACCGCTTCCTCACCATCCCTCGGCTGGAAGAGCTCTATAACACA catctctataaggtgagttgtaattgctcttaagggtcctctctccacagCCTGGAGCTCTAGAGCAGGCAATGCTAGACGCATTAGTGATGGATCAAGTAGATCTGGTGAAACTTTTGCTAGAGAACGGGGTAAACCTTCATCGATTTCTTACAATTCCACAACTTAAGGAGTTCTATAACACAgtaaggattgattacttcttgtcagctagaccaaaattcctgttgtgaga Alignment from CESAR CCTGGTGCTCTAGAACAAGCAATGCTAGATGCTTTAGTGATGGATCGAGTGGACTTTGTGAAACTTTTGATAGAGAATGGGGTGAACCTCCACCGCTTCCTCACCATCCCTCGGCTGGAAGAGCTCTATAACACA catctctataaggtgagttgtaattgctcttaagggtcctctctccacagCCTGGAGCTCTAGAGCAGGCAATGCTAGACGCATTAGTGATGGATCAAGTAGATCTGGTGAAACTTTTGCTAGAGAACGGGGTAAACCTTCATCGATTTCTTACAATTCCACAACTTAAGGAGTTCTATAACACAgtaaggattgattacttcttgtcagctagaccaaaattcctgttgtgaga Alignment from Spaln_aa2Genome CCTGGTGCTCTAGAACAAGCAATGCTAGATGCTTTAGTGATGGATCGAGTGGACTTTGTGAAACTTTTGATAGAGAATGGGGTGAACCTCCACCGCTTCCTCACCATCCCTCGGCTGGAAGAGCTCTATAACACA catctctataaggtgagttgtaattgctcttaagggtcctctctccacagCCTGGAGCTCTAGAGCAGGCAATGCTAGACGCATTAGTGATGGATCAAGTAGATCTGGTGAAACTTTTGCTAGAGAACGGGGTAAACCTTCATCGATTTCTTACAATTCCACAACTTAAGGAGTTCTATAACACAgtaaggattgattacttcttgtcagctagaccaaaattcctgttgtgaga Alignment from Spaln_nt2Genome CCTGGTGCTCTAGAACAAGCAATGCTAGATGCTTTAGTGATGGATCGAGTGGACTTTGTGAAACTTTTGATAGAGAATGGGGTGAACCTCCACCGCTTCCTCACCATCCCTCGGCTGGAAGAGCTCTATAACACA catctctataaggtgagttgtaattgctcttaagggtcctctctccacagCCTGGAGCTCTAGAGCAGGCAATGCTAGACGCATTAGTGATGGATCAAGTAGATCTGGTGAAACTTTTGCTAGAGAACGGGGTAAACCTTCATCGATTTCTTACAATTCCACAACTTAAGGAGTTCTATAACACAgtaaggattgattacttcttgtcagctagaccaaaattcctgttgtgaga Alignment from Pairagon CCTGGTGCTCTAGAACAAGCAATGCTAGATGCTTTAGTGATGGATCGAGTGGACTTTGTGAAACTTTTGATAGAGAATGGGGTGAACCTCCACCGCTTCCTCACCATCCCTCGGCTGGAAGAGCTCTATAACACA catctctataaggtgagttgtaattgctcttaagggtcctctctccacagCCTGGAGCTCTAGAGCAGGCAATGCTAGACGCATTAGTGATGGATCAAGTAGATCTGGTGAAACTTTTGCTAGAGAACGGGGTAAACCTTCATCGATTTCTTACAATTCCACAACTTAAGGAGTTCTATAACACAgtaaggattgattacttcttgtcagctagaccaaaattcctgttgtgaga Alignment from Exonerate_protein2genome CCTGGTGCTCTAGAACAAGCAATGCTAGATGCTTTAGTGATGGATCGAGTGGACTTTGTGAAACTTTTGATAGAGAATGGGGTGAACCTCCACCGCTTCCTCACCATCCCTCGGCTGGAAGAGCTCTATAACACA catctctataaggtgagttgtaattgctcttaagggtcctctctccacagCCTGGAGCTCTAGAGCAGGCAATGCTAGACGCATTAGTGATGGATCAAGTAGATCTGGTGAAACTTTTGCTAGAGAACGGGGTAAACCTTCATCGATTTCTTACAATTCCACAACTTAAGGAGTTCTATAACACAgtaaggattgattacttcttgtcagctagaccaaaattcctgttgtgaga Alignment from Exonerate_coding2genome CCTGGTGCTCTAGAACAAGCAATGCTAGATGCTTTAGTGATGGATCGAGTGGACTTTGTGAAACTTTTGATAGAGAATGGGGTGAACCTCCACCGCTTCCTCACCATCCCTCGGCTGGAAGAGCTCTATAACACA catctctataaggtgagttgtaattgctcttaagggtcctctctccacagCCTGGAGCTCTAGAGCAGGCAATGCTAGACGCATTAGTGATGGATCAAGTAGATCTGGTGAAACTTTTGCTAGAGAACGGGGTAAACCTTCATCGATTTCTTACAATTCCACAACTTAAGGAGTTCTATAACACAgtaaggattgattacttcttgtcagctagaccaaaattcctgttgtgaga Alignment from GeneWise CCTGGTGCTCTAGAACAAGCAATGCTAGATGCTTTAGTGATGGATCGAGTGGACTTTGTGAAACTTTTGATAGAGAATGGGGTGAACCTCCACCGCTTCCTCACCATCCCTCGGCTGGAAGAGCTCTATAACACA catctctataaggtgagttgtaattgctcttaagggtcctctctccacagCCTGGAGCTCTAGAGCAGGCAATGCTAGACGCATTAGTGATGGATCAAGTAGATCTGGTGAAACTTTTGCTAGAGAACGGGGTAAACCTTCATCGATTTCTTACAATTCCACAACTTAAGGAGTTCTATAACACAgtaaggattgattacttcttgtcagctagaccaaaattcctgttgtgaga #### Trpm6_ID4478_15 --> 0 - 0 Original Alignment AGTGTGAGCAGCTTTGCTCAGGGCCTCTCCCAGCACTCTCTTCATCAGAGACATTCACTGAGAAATAGAAAGGAGTCTTCTGAAAGCACACTGCACTCCCAGTTCTTCAGGACGGCCCAGCCCTACAAATCCAAG cttctagacctttcttcttttttctttttactattgtctcttcgcctcagAGCATAAGCAGCATCGCTCAGGACCTCTCACAGCTCTCTCTCCATCGAAGACGTTCACTTAGAAATAGGGAAGAGTCCTCTGAAAGCACCCTACACTCCCAGTTTTTCAGGACAGCCCAGCCTTACAAGTCCAAGgtaatactcatagttgatatggtttacaatgaaaatggttctaaggattt Alignment from CESAR AGTGTGAGCAGCTTTGCTCAGGGCCTCTCCCAGCACTCTCTTCATCAGAGACATTCACTGAGAAATAGAAAGGAGTCTTCTGAAAGCACACTGCACTCCCAGTTCTTCAGGACGGCCCAGCCCTACAAATCCAAG cttctagacctttcttcttttttctttttactattgtctcttcgcctcagAGCATAAGCAGCATCGCTCAGGACCTCTCACAGCTCTCTCTCCATCGAAGACGTTCACTTAGAAATAGGGAAGAGTCCTCTGAAAGCACCCTACACTCCCAGTTTTTCAGGACAGCCCAGCCTTACAAGTCCAAGgtaatactcatagttgatatggtttacaatgaaaatggttctaaggattt Alignment from Spaln_aa2Genome GAGTGTGAGCAGCTTTGCTCAGGGCCTCTCCCAGCACTCTCTTCATCAGAGACATTCACTGAGAAATAGAAAGGAGTCTTCTGAAAGCACACTGCACTCCCAGTTCTTCAGGACGGCCCAGCCCTACAAATCCAA cttctagacctttcttcttttttctttttactattgtctcttcgcctcagAGCATAAGCAGCATCGCTCAGGACCTCTCACAGCTCTCTCTCCATCGAAGACGTTCACTTAGAAATAGGGAAGAGTCCTCTGAAAGCACCCTACACTCCCAGTTTTTCAGGACAGCCCAGCCTTACAAGTCCAAGgtaatactcatagttgatatggtttacaatgaaaatggttctaaggattt Alignment from Spaln_nt2Genome AGTGTGAGCAGCTTTGCTCAGGGCCTCTCCCAGCACTCTCTTCATCAGAGACATTCACTGAGAAATAGAAAGGAGTCTTCTGAAAGCACACTGCACTCCCAGTTCTTCAGGACGGCCCAGCCCTACAAATCCAAG cttctagacctttcttcttttttctttttactattgtctcttcgcctcagAGCATAAGCAGCATCGCTCAGGACCTCTCACAGCTCTCTCTCCATCGAAGACGTTCACTTAGAAATAGGGAAGAGTCCTCTGAAAGCACCCTACACTCCCAGTTTTTCAGGACAGCCCAGCCTTACAAGTCCAAGgtaatactcatagttgatatggtttacaatgaaaatggttctaaggattt Alignment from Pairagon AGTGTGAGCAGCTTTGCTCAGGGCCTCTCCCAGCACTCTCTTCATCAGAGACATTCACTGAGAAATAGAAAGGAGTCTTCTGAAAGCACACTGCACTCCCAGTTCTTCAGGACGGCCCAGCCCTACAAATCCAAG cttctagacctttcttcttttttctttttactattgtctcttcgcctcagAGCATAAGCAGCATCGCTCAGGACCTCTCACAGCTCTCTCTCCATCGAAGACGTTCACTTAGAAATAGGGAAGAGTCCTCTGAAAGCACCCTACACTCCCAGTTTTTCAGGACAGCCCAGCCTTACAAGTCCAAGgtaatactcatagttgatatggtttacaatgaaaatggttctaaggattt Alignment from Exonerate_protein2genome AGTGTGAGCAGCTTTGCTCAGGGCCTCTCCCAGCACTCTCTTCATCAGAGACATTCACTGAGAAATAGAAAGGAGTCTTCTGAAAGCACACTGCACTCCCAGTTCTTCAGGACGGCCCAGCCCTACAAATCCAAG cttctagacctttcttcttttttctttttactattgtctcttcgcctcagAGCATAAGCAGCATCGCTCAGGACCTCTCACAGCTCTCTCTCCATCGAAGACGTTCACTTAGAAATAGGGAAGAGTCCTCTGAAAGCACCCTACACTCCCAGTTTTTCAGGACAGCCCAGCCTTACAAGTCCAAGgtaatactcatagttgatatggtttacaatgaaaatggttctaaggattt Alignment from Exonerate_coding2genome AGTGTGAGCAGCTTTGCTCAGGGCCTCTCCCAGCACTCTCTTCATCAGAGACATTCACTGAGAAATAGAAAGGAGTCTTCTGAAAGCACACTGCACTCCCAGTTCTTCAGGACGGCCCAGCCCTACAAATCCAAG cttctagacctttcttcttttttctttttactattgtctcttcgcctcagAGCATAAGCAGCATCGCTCAGGACCTCTCACAGCTCTCTCTCCATCGAAGACGTTCACTTAGAAATAGGGAAGAGTCCTCTGAAAGCACCCTACACTCCCAGTTTTTCAGGACAGCCCAGCCTTACAAGTCCAAGgtaatactcatagttgatatggtttacaatgaaaatggttctaaggattt Alignment from GeneWise AGTGTGAGCAGCTTTGCTCAGGGCCTCTCCCAGCACTCTCTTCATCAGAGACATTCACTGAGAAATAGAAAGGAGTCTTCTGAAAGCACACTGCACTCCCAGTTCTTCAGGACGGCCCAGCCCTACAAATCCAAG cttctagacctttcttcttttttctttttactattgtctcttcgcctcagAGCATAAGCAGCATCGCTCAGGACCTCTCACAGCTCTCTCTCCATCGAAGACGTTCACTTAGAAATAGGGAAGAGTCCTCTGAAAGCACCCTACACTCCCAGTTTTTCAGGACAGCCCAGCCTTACAAGTCCAAGgtaatactcatagttgatatggtttacaatgaaaatggttctaaggattt #### Trpm6_ID4492_28 --> 0 - 1 Original Alignment GTAATAACAGTCAATGCCTGCTATCAAAGTGACCAGTTGAATGCAGAGCCAGGAGAAACTAACACCACTGAAGAGTTCAGCAAGAAATGGCTCTCTGTATCCAACTTCAGCCAGATAg catcaccgattggtgactataattgggtgtgacatatgtcttttttatagGTAATAACTGTCAATGCGTGCTATCATACTGATCAGTTGAATGCAGAACCTAGAGAAACTAATTCCACTGAAGAATTCAGCAAAAAATGGCCCTCTGTATCCAATTTCAGCCACATAggtaatgcaatcttaccactcaatcttaccacagtacataatagcatcagc Alignment from CESAR GTAATAACAGTCAATGCCTGCTATCAAAGTGACCAGTTGAATGCAGAGCCAGGAGAAACTAACACCACTGAAGAGTTCAGCAAGAAATGGCTCTCTGTATCCAACTTCAGCCAGATAg catcaccgattggtgactataattgggtgtgacatatgtcttttttatagGTAATAACTGTCAATGCGTGCTATCATACTGATCAGTTGAATGCAGAACCTAGAGAAACTAATTCCACTGAAGAATTCAGCAAAAAATGGCCCTCTGTATCCAATTTCAGCCACATAggtaatgcaatcttaccactcaatcttaccacagtacataatagcatcagc Alignment from Spaln_aa2Genome GTAATAACAGTCAATGCCTGCTATCAAAGTGACCAGTTGAATGCAGAGCCAGGAGAAACTAACACCACTGAAGAGTTCAGCAAGAAATGGCTCTCTGTATCCAACTTCAGCCAGATAG catcaccgattggtgactataattgggtgtgacatatgtcttttttatagGTAATAACTGTCAATGCGTGCTATCATACTGATCAGTTGAATGCAGAACCTAGAGAAACTAATTCCACTGAAGAATTCAGCAAAAAATGGCCCTCTGTATCCAATTTCAGCCACATAGgtaatgcaatcttaccactcaatcttaccacagtacataatagcatcagc Alignment from Spaln_nt2Genome GTAATAACAGTCAATGCCTGCTATCAAAGTGACCAGTTGAATGCAGAGCCAGGAGAAACTAACACCACTGAAGAGTTCAGCAAGAAATGGCTCTCTGTATCCAACTTCAGCCAGATAG catcaccgattggtgactataattgggtgtgacatatgtcttttttatagGTAATAACTGTCAATGCGTGCTATCATACTGATCAGTTGAATGCAGAACCTAGAGAAACTAATTCCACTGAAGAATTCAGCAAAAAATGGCCCTCTGTATCCAATTTCAGCCACATAGgtaatgcaatcttaccactcaatcttaccacagtacataatagcatcagc Alignment from Pairagon GTAATAACAGTCAATGCCTGCTATCAAAGTGACCAGTTGAATGCAGAGCCAGGAGAAACTAACACCACTGAAGAGTTCAGCAAGAAATGGCTCTCTGTATCCAACTTCAGCCAGATAG catcaccgattggtgactataattgggtgtgacatatgtcttttttatagGTAATAACTGTCAATGCGTGCTATCATACTGATCAGTTGAATGCAGAACCTAGAGAAACTAATTCCACTGAAGAATTCAGCAAAAAATGGCCCTCTGTATCCAATTTCAGCCACATAGgtaatgcaatcttaccactcaatcttaccacagtacataatagcatcagc Alignment from Exonerate_protein2genome GTAATAACAGTCAATGCCTGCTATCAAAGTGACCAGTTGAATGCAGAGCCAGGAGAAACTAACACCACTGAAGAGTTCAGCAAGAAATGGCTCTCTGTATCCAACTTCAGCCAGATAG catcaccgattggtgactataattgggtgtgacatatgtcttttttatagGTAATAACTGTCAATGCGTGCTATCATACTGATCAGTTGAATGCAGAACCTAGAGAAACTAATTCCACTGAAGAATTCAGCAAAAAATGGCCCTCTGTATCCAATTTCAGCCACATAGgtaatgcaatcttaccactcaatcttaccacagtacataatagcatcagc Alignment from Exonerate_coding2genome GTAATAACAGTCAATGCCTGCTATCAAAGTGACCAGTTGAATGCAGAGCCAGGAGAAACTAACACCACTGAAGAGTTCAGCAAGAAATGGCTCTCTGTATCCAACTTCAGCCAGATAG catcaccgattggtgactataattgggtgtgacatatgtcttttttatagGTAATAACTGTCAATGCGTGCTATCATACTGATCAGTTGAATGCAGAACCTAGAGAAACTAATTCCACTGAAGAATTCAGCAAAAAATGGCCCTCTGTATCCAATTTCAGCCACATAGgtaatgcaatcttaccactcaatcttaccacagtacataatagcatcagc Alignment from GeneWise GTAATAACAGTCAATGCCTGCTATCAAAGTGACCAGTTGAATGCAGAGCCAGGAGAAACTAACACCACTGAAGAGTTCAGCAAGAAATGGCTCTCTGTATCCAACTTCAGCCAGATAG catcaccgattggtgactataattgggtgtgacatatgtcttttttatagGTAATAACTGTCAATGCGTGCTATCATACTGATCAGTTGAATGCAGAACCTAGAGAAACTAATTCCACTGAAGAATTCAGCAAAAAATGGCCCTCTGTATCCAATTTCAGCCACATAGgtaatgcaatcttaccactcaatcttaccacagtacataatagcatcagc #### Trpm6_ID4496_31 --> 1 - 1 Original Alignment aACAAGAAGTCCAAATGAAGTTCACa agtttttggacatccaaaaaaccgatcattcctccttctttacctcctagaACAAGGAGTTCAAATGAAGTTCACagtaagttatgagattgaaatgattatccatcttcatcactcacacatacc Alignment from CESAR aACAAGAAGTCCAAATGAAGTTCACa agtttttggacatccaaaaaaccgatcattcctccttctttacctcctagaACAAGGAGTTCAAATGAAGTTCACagtaagttatgagattgaaatgattatccatcttcatcactcacacatacc Alignment from Spaln_aa2Genome AACAAGAAGTCCAAATGAAGTTCACA agtttttggacatccaaaaaaccgatcattcctccttctttacctcctagAACAAGGAGTTCAAATGAAGTTCACAgtaagttatgagattgaaatgattatccatcttcatcactcacacatacc Alignment from Spaln_nt2Genome AACAAGAAGTCCAAATGAAGTTCACA agtttttggacatccaaaaaaccgatcattcctccttctttacctcctagAACAAGGAGTTCAAATGAAGTTCACAgtaagttatgagattgaaatgattatccatcttcatcactcacacatacc Alignment from Pairagon AACAAGAAGTCCAAATGAAGTTCACA agtttttggacatccaaaaaaccgatcattcctccttctttacctcctagAACAAGGAGTTCAAATGAAGTTCACAgtaagttatgagattgaaatgattatccatcttcatcactcacacatacc Alignment from Exonerate_protein2genome agtttttggacatccaaaaaaccgatcattcctccttctttacctcctagaacaaggagttcaaatgaagttcacagtaagttatgagattgaaatgattatccatcttcatcactcacacatacc Alignment from Exonerate_coding2genome agtttttggacatccaaaaaaccgatcattcctccttctttacctcctagaacaaggagttcaaatgaagttcacagtaagttatgagattgaaatgattatccatcttcatcactcacacatacc Alignment from GeneWise agtttttggacatccaaaaaaccgatcattcctccttctttacctcctagaacaaggagttcaaatgaagttcacagtaagttatgagattgaaatgattatccatcttcatcactcacacatacc #### Trpm6_ID4505_35 --> 0 - 2 Original Alignment GAAATTCAACAGCAAAGAGCTGCCCAAAAACTCATCTATACCTTTAACCAAGTAAAACCACAAACCATTCCCTATACACCAag ctgagatatggcttgccttgtgtcatttcccattctcccgtgctcctcagGAAATTCAACAGCAAAGAGCTGCCCAAAAACTTATCTATACCTTTAACCAAGTGAAACCACAATCCATTCCCTACACACCAaggtgagaaaagaattagattaaagtgtgcctaataattaagcgtaatacct Alignment from CESAR GAAATTCAACAGCAAAGAGCTGCCCAAAAACTCATCTATACCTTTAACCAAGTAAAACCACAAACCATTCCCTATACACCAag ctgagatatggcttgccttgtgtcatttcccattctcccgtgctcctcagGAAATTCAACAGCAAAGAGCTGCCCAAAAACTTATCTATACCTTTAACCAAGTGAAACCACAATCCATTCCCTACACACCAaggtgagaaaagaattagattaaagtgtgcctaataattaagcgtaatacct Alignment from Spaln_aa2Genome GGAAATTCAACAGCAAAGAGCTGCCCAAAAACTCATCTATACCTTTAACCAAGTAAAACCACAAACCATTCCCTATACACCAA ctgagatatggcttgccttgtgtcatttcccattctcccgtgctcctcagGAAATTCAACAGCAAAGAGCTGCCCAAAAACTTATCTATACCTTTAACCAAGTGAAACCACAATCCATTCCCTACACACCAAGgtgagaaaagaattagattaaagtgtgcctaataattaagcgtaatacct Alignment from Spaln_nt2Genome GAAATTCAACAGCAAAGAGCTGCCCAAAAACTCATCTATACCTTTAACCAAGTAAAACCACAAACCATTCCCTATACACCAAG ctgagatatggcttgccttgtgtcatttcccattctcccgtgctcctcagGAAATTCAACAGCAAAGAGCTGCCCAAAAACTTATCTATACCTTTAACCAAGTGAAACCACAATCCATTCCCTACACACCAAGgtgagaaaagaattagattaaagtgtgcctaataattaagcgtaatacct Alignment from Pairagon GAAATTCAACAGCAAAGAGCTGCCCAAAAACTCATCTATACCTTTAACCAAGTAAAACCACAAACCATTCCCTATACACCAAG ctgagatatggcttgccttgtgtcatttcccattctcccgtgctcctcagGAAATTCAACAGCAAAGAGCTGCCCAAAAACTTATCTATACCTTTAACCAAGTGAAACCACAATCCATTCCCTACACACCAAGgtgagaaaagaattagattaaagtgtgcctaataattaagcgtaatacct Alignment from Exonerate_protein2genome GAAATTCAACAGCAAAGAGCTGCCCAAAAACTCATCTATACCTTTAACCAAGTAAAACCACAAACCATTCCCTATACACCAAG ctgagatatggcttgccttgtgtcatttcccattctcccgtgctcctcagGAAATTCAACAGCAAAGAGCTGCCCAAAAACTTATCTATACCTTTAACCAAGTGAAACCACAATCCATTCCCTACACACCAAGgtgagaaaagaattagattaaagtgtgcctaataattaagcgtaatacct Alignment from Exonerate_coding2genome GAAATTCAACAGCAAAGAGCTGCCCAAAAACTCATCTATACCTTTAACCAAGTAAAACCACAAACCATTCCCTATACACCAAG ctgagatatggcttgccttgtgtcatttcccattctcccgtgctcctcagGAAATTCAACAGCAAAGAGCTGCCCAAAAACTTATCTATACCTTTAACCAAGTGAAACCACAATCCATTCCCTACACACCAAGgtgagaaaagaattagattaaagtgtgcctaataattaagcgtaatacct Alignment from GeneWise GAAATTCAACAGCAAAGAGCTGCCCAAAAACTCATCTATACCTTTAACCAAGTAAAACCACAAACCATTCCCTATACACCAAG ctgagatatggcttgccttgtgtcatttcccattctcccgtgctcctcagGAAATTCAACAGCAAAGAGCTGCCCAAAAACTTATCTATACCTTTAACCAAGTGAAACCACAATCCATTCCCTACACACCAAGgtgagaaaagaattagattaaagtgtgcctaataattaagcgtaatacct #### Trpt1_ID1979_2 --> 0 - 1 Original Alignment GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTg gggatcccctgcaggaccaaaatgtgcagccaccttctgtctcctcccagGACCGAAATGTGCAGCTGTCTAAAGCTCTAGCCTATGCACTTCACCATGGAGGTTTGGATCTGGGACTTCCCATGCAAGCTggtaagtaaataagttgggactgcaaatctgccttgagcctacaatccctc Alignment from CESAR GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTg gggatcccctgcaggaccaaaatgtgcagccaccttctgtctcctcccagGACCGAAATGTGCAGCTGTCTAAAGCTCTAGCCTATGCACTTCACCATGGAGGTTTGGATCTGGGACTTCCCATGCAAGCTggtaagtaaataagttgggactgcaaatctgccttgagcctacaatccctc Alignment from Spaln_aa2Genome GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTG gggatcccctgcaggaccaaaatgtgcagccaccttctgtctcctcccagGACCGAAATGTGCAGCTGTCTAAAGCTCTAGCCTATGCACTTCACCATGGAGGTTTGGATCTGGGACTTCCCATGCAAGCTGgtaagtaaataagttgggactgcaaatctgccttgagcctacaatccctc Alignment from Spaln_nt2Genome GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTG gggatcccctgcaggaccaaaatgtgcagccaccttctgtctcctcccagGACCGAAATGTGCAGCTGTCTAAAGCTCTAGCCTATGCACTTCACCATGGAGGTTTGGATCTGGGACTTCCCATGCAAGCTGgtaagtaaataagttgggactgcaaatctgccttgagcctacaatccctc Alignment from Pairagon GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTG gggatcccctgcaggaccaaaatgtgcagccaccttctgtctcctcccagGACCGAAATGTGCAGCTGTCTAAAGCTCTAGCCTATGCACTTCACCATGGAGGTTTGGATCTGGGACTTCCCATGCAAGCTGgtaagtaaataagttgggactgcaaatctgccttgagcctacaatccctc Alignment from Exonerate_protein2genome GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTG gggatcccctgcaggaccaaaatgtgcagccaccttctgtctcctcccagGACCGAAATGTGCAGCTGTCTAAAGCTCTAGCCTATGCACTTCACCATGGAGGTTTGGATCTGGGACTTCCCATGCAAGCTGgtaagtaaataagttgggactgcaaatctgccttgagcctacaatccctc Alignment from Exonerate_coding2genome GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTG gggatcccctgcaggaccaaaatgtgcagccaccttctgtctcctcccagGACCGAAATGTGCAGCTGTCTAAAGCTCTAGCCTATGCACTTCACCATGGAGGTTTGGATCTGGGACTTCCCATGCAAGCTGgtaagtaaataagttgggactgcaaatctgccttgagcctacaatccctc Alignment from GeneWise GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTG gggatcccctgcaggaccaaaatgtgcagccaccttctgtctcctcccagGACCGAAATGTGCAGCTGTCTAAAGCTCTAGCCTATGCACTTCACCATGGAGGTTTGGATCTGGGACTTCCCATGCAAGCTGgtaagtaaataagttgggactgcaaatctgccttgagcctacaatccctc #### Trub1_ID12385_5 --> 2 - 2 Original Alignment atAAAATAACACGAGAAGATATCGAAGGCATTCTGCAGAAGTTTACTGGGAATATAATGCAAGTACCCCCGct gctactgtttctgtagtcattcccatcagtggtcttgctttcccctctagatAGGATAACCCATGAAGATATTGAAGGGACTCTGCAGAAATTTACTGGGAATATAATGCAGGTACCTCCActgtatgcaaggagtagagtgacttcattcatgttttgtcaccacatcttgt Alignment from CESAR atAAAATAACACGAGAAGATATCGAAGGCATTCTGCAGAAGTTTACTGGGAATATAATGCAAGTACCCCCGct gctactgtttctgtagtcattcccatcagtggtcttgctttcccctctagatAGGATAACCCATGAAGATATTGAAGGGACTCTGCAGAAATTTACTGGGAATATAATGCAGGTACCTCCActgtatgcaaggagtagagtgacttcattcatgttttgtcaccacatcttgt Alignment from Spaln_aa2Genome ATAAAATAACACGAGAAGATATCGAAGGCATTCTGCAGAAGTTTACTGGGAATATAATGCAAGTACCCCCGCT gctactgtttctgtagtcattcccatcagtggtcttgctttcccctctagATAGGATAACCCATGAAGATATTGAAGGGACTCTGCAGAAATTTACTGGGAATATAATGCAGGTACCTCCACTgtatgcaaggagtagagtgacttcattcatgttttgtcaccacatcttgt Alignment from Spaln_nt2Genome ATAAAATAACACGAGAAGATATCGAAGGCATTCTGCAGAAGTTTACTGGGAATATAATGCAAGTACCCCCGCT gctactgtttctgtagtcattcccatcagtggtcttgctttcccctctagATAGGATAACCCATGAAGATATTGAAGGGACTCTGCAGAAATTTACTGGGAATATAATGCAGGTACCTCCACTgtatgcaaggagtagagtgacttcattcatgttttgtcaccacatcttgt Alignment from Pairagon ATAAAATAACACGAGAAGATATCGAAGGCATTCTGCAGAAGTTTACTGGGAATATAATGCAAGTACCCCCGCT gctactgtttctgtagtcattcccatcagtggtcttgctttcccctctagATAGGATAACCCATGAAGATATTGAAGGGACTCTGCAGAAATTTACTGGGAATATAATGCAGGTACCTCCACTgtatgcaaggagtagagtgacttcattcatgttttgtcaccacatcttgt Alignment from Exonerate_protein2genome ATAAAATAACACGAGAAGATATCGAAGGCATTCTGCAGAAGTTTACTGGGAATATAATGCAAGTACCCCCGCT gctactgtttctgtagtcattcccatcagtggtcttgctttcccctctagATAGGATAACCCATGAAGATATTGAAGGGACTCTGCAGAAATTTACTGGGAATATAATGCAGGTACCTCCACTgtatgcaaggagtagagtgacttcattcatgttttgtcaccacatcttgt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATAAAATAACACGAGAAGATATCGAAGGCATTCTGCAGAAGTTTACTGGGAATATAATGCAAGTACCCCCGCT gctactgtttctgtagtcattcccatcagtggtcttgctttcccctctagATAGGATAACCCATGAAGATATTGAAGGGACTCTGCAGAAATTTACTGGGAATATAATGCAGGTACCTCCACTgtatgcaaggagtagagtgacttcattcatgttttgtcaccacatcttgt #### Trub1_ID12386_6 --> 1 - 1 Original Alignment cTATTCTGCGCTGAAGAAGGATGGGCAGAGACTCTCAACGCTAATGAAGAAAGGCAAGGTGGTGGAGGCCAGACCGGCCCGGCCCGTGACTGTCCACAGTATCTCCCTCCTGAAGTTCCAGCCTCCGTTCTTCACGCTGg acctgagagggctgcctccctttgttttctggtacttgcctcccctgcagcTATTCTGCGCTCAAAAAGGATGGAAAGAGGCTCTCTACCCTAATGAAAAAAGGCAAAGTGGTGGAGGCCAGACCAGTACGGCCAGTACCTGTTCACAGCATGTTCCTCCTGAAATTCCAGCCACCATTCTTTACGCTGggtaacagctgatttgaaacagtaagaacaatctctaccattgtttgtctt Alignment from CESAR cTATTCTGCGCTGAAGAAGGATGGGCAGAGACTCTCAACGCTAATGAAGAAAGGCAAGGTGGTGGAGGCCAGACCGGCCCGGCCCGTGACTGTCCACAGTATCTCCCTCCTGAAGTTCCAGCCTCCGTTCTTCACGCTGg acctgagagggctgcctccctttgttttctggtacttgcctcccctgcagcTATTCTGCGCTCAAAAAGGATGGAAAGAGGCTCTCTACCCTAATGAAAAAAGGCAAAGTGGTGGAGGCCAGACCAGTACGGCCAGTACCTGTTCACAGCATGTTCCTCCTGAAATTCCAGCCACCATTCTTTACGCTGggtaacagctgatttgaaacagtaagaacaatctctaccattgtttgtctt Alignment from Spaln_aa2Genome CTATTCTGCGCTGAAGAAGGATGGGCAGAGACTCTCAACGCTAATGAAGAAAGGCAAGGTGGTGGAGGCCAGACCGGCCCGGCCCGTGACTGTCCACAGTATCTCCCTCCTGAAGTTCCAGCCTCCGTTCTTCACGCTGG acctgagagggctgcctccctttgttttctggtacttgcctcccctgcagCTATTCTGCGCTCAAAAAGGATGGAAAGAGGCTCTCTACCCTAATGAAAAAAGGCAAAGTGGTGGAGGCCAGACCAGTACGGCCAGTACCTGTTCACAGCATGTTCCTCCTGAAATTCCAGCCACCATTCTTTACGCTGGgtaacagctgatttgaaacagtaagaacaatctctaccattgtttgtctt Alignment from Spaln_nt2Genome CTATTCTGCGCTGAAGAAGGATGGGCAGAGACTCTCAACGCTAATGAAGAAAGGCAAGGTGGTGGAGGCCAGACCGGCCCGGCCCGTGACTGTCCACAGTATCTCCCTCCTGAAGTTCCAGCCTCCGTTCTTCACGCTGG acctgagagggctgcctccctttgttttctggtacttgcctcccctgcagCTATTCTGCGCTCAAAAAGGATGGAAAGAGGCTCTCTACCCTAATGAAAAAAGGCAAAGTGGTGGAGGCCAGACCAGTACGGCCAGTACCTGTTCACAGCATGTTCCTCCTGAAATTCCAGCCACCATTCTTTACGCTGGgtaacagctgatttgaaacagtaagaacaatctctaccattgtttgtctt Alignment from Pairagon CTATTCTGCGCTGAAGAAGGATGGGCAGAGACTCTCAACGCTAATGAAGAAAGGCAAGGTGGTGGAGGCCAGACCGGCCCGGCCCGTGACTGTCCACAGTATCTCCCTCCTGAAGTTCCAGCCTCCGTTCTTCACGCTGG acctgagagggctgcctccctttgttttctggtacttgcctcccctgcagCTATTCTGCGCTCAAAAAGGATGGAAAGAGGCTCTCTACCCTAATGAAAAAAGGCAAAGTGGTGGAGGCCAGACCAGTACGGCCAGTACCTGTTCACAGCATGTTCCTCCTGAAATTCCAGCCACCATTCTTTACGCTGGgtaacagctgatttgaaacagtaagaacaatctctaccattgtttgtctt Alignment from Exonerate_protein2genome CTATTCTGCGCTGAAGAAGGATGGGCAGAGACTCTCAACGCTAATGAAGAAAGGCAAGGTGGTGGAGGCCAGACCGGCCCGGCCCGTGACTGTCCACAGTATCTCCCTCCTGAAGTTCCAGCCTCCGTTCTTCACGCTGG acctgagagggctgcctccctttgttttctggtacttgcctcccctgcagCTATTCTGCGCTCAAAAAGGATGGAAAGAGGCTCTCTACCCTAATGAAAAAAGGCAAAGTGGTGGAGGCCAGACCAGTACGGCCAGTACCTGTTCACAGCATGTTCCTCCTGAAATTCCAGCCACCATTCTTTACGCTGGgtaacagctgatttgaaacagtaagaacaatctctaccattgtttgtctt Alignment from Exonerate_coding2genome GTACCCCCGCTCTATTCTGCGCTGAAGAAGGATGGGCAGAGACTCTCAACGCTAATGAAGAAAGGCAAGGTGGTGGAGGCCAGACCGGCCCGGCCCGTGACTGTCCACAGTATCTCCCTCCTGAAGTTCCAGCCTCCGTTCTTCACGCTGG acctgagagggctgcctccctttgttttctggtacttgcctcccctgcagCTAT------TCTGCGCTC-----AAAAAGGATGGAAAGAGGCTCTCTACCCTAATGAAAAAAGGCAAAGTGGTGGAGGCCAGACCAGTACGGCCAGTACCTGTTCACAGCATGTTCCTCCTGAAATTCCAGCCACCATTCTTTACGCTGGgtaacagctgatttgaaacagtaagaacaatctctaccattgtttgtctt Alignment from GeneWise CTATTCTGCGCTGAAGAAGGATGGGCAGAGACTCTCAACGCTAATGAAGAAAGGCAAGGTGGTGGAGGCCAGACCGGCCCGGCCCGTGACTGTCCACAGTATCTCCCTCCTGAAGTTCCAGCCTCCGTTCTTCACGCTGG acctgagagggctgcctccctttgttttctggtacttgcctcccctgcagCTATTCTGCGCTCAAAAAGGATGGAAAGAGGCTCTCTACCCTAATGAAAAAAGGCAAAGTGGTGGAGGCCAGACCAGTACGGCCAGTACCTGTTCACAGCATGTTCCTCCTGAAATTCCAGCCACCATTCTTTACGCTGGgtaacagctgatttgaaacagtaagaacaatctctaccattgtttgtctt #### Tsga10ip_ID978_2 --> 0 - 2 Original Alignment ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACag atttagaacaaggacggatctcacttcctgacttcatcacctgcccacagACTAATGCCTGTCTTACAGGAAATTGGCGGTTCTCCCAGGTTTTATCTGGACTAGGGGTAGATGATGATCAGCTACTAGCTGAGGCAGGCATTGCTGAAAGCACTCCCCGGAAGCACaggtaatggatgcaaggaactggtctactatatcaagacacatgtcctgccc Alignment from CESAR ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACag atttagaacaaggacggatctcacttcctgacttcatcacctgcccacagACTAATGCCTGTCTTACAGGAAATTGGCGGTTCTCCCAGGTTTTATCTGGACTAGGGGTAGATGATGATCAGCTACTAGCTGAGGCAGGCATTGCTGAAAGCACTCCCCGGAAGCACaggtaatggatgcaaggaactggtctactatatcaagacacatgtcctgccc Alignment from Spaln_aa2Genome ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG atttagaacaaggacggatctcacttcctgacttcatcacctgcccacagACTAATGCCTGTCTTACAGGAAATTGGCGGTTCTCCCAGGTTTTATCTGGACTAGGGGTAGATGATGATCAGCTACTAGCTGAGGCAGGCATTGCTGAAAGCACTCCCCGGAAGCACAGgtaatggatgcaaggaactggtctactatatcaagacacatgtcctgccc Alignment from Spaln_nt2Genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG atttagaacaaggacggatctcacttcctgacttcatcacctgcccaCAGACTAATGCCTGTCTTACAGGAAATTGGCGGTTCTCCCAGGTTTTATCTGGACTAGGGGTAGATGATGATCAGCTACTAGCTGAGGCAGGCATTGCTGAAAGCACTCCCCGGAAGCACAGgtaatggatgcaaggaactggtctactatatcaagacacatgtcctgccc Alignment from Pairagon CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG atttagaacaaggacggatctcacttcctgacttcatcacctgcccaCAGACTAATGCCTGTCTTACAGGAAATTGGCGGTTCTCCCAGGTTTTATCTGGACTAGGGGTAGATGATGATCAGCTACTAGCTGAGGCAGGCATTGCTGAAAGCACTCCCCGGAAGCACAGgtaatggatgcaaggaactggtctactatatcaagacacatgtcctgccc Alignment from Exonerate_protein2genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG atttagaacaaggacggatctcacttcctgacttcatcacctgcccaCAGACTAATGCCTGTCTTACAGGAAATTGGCGGTTCTCCCAGGTTTTATCTGGACTAGGGGTAGATGATGATCAGCTACTAGCTGAGGCAGGCATTGCTGAAAGCACTCCCCGGAAGCACAGgtaatggatgcaaggaactggtctactatatcaagacacatgtcctgccc Alignment from Exonerate_coding2genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG atttagaacaaggacggatctcacttcctgacttcatcacctgcccaCAGACTAATGCCTGTCTTACAGGAAATTGGCGGTTCTCCCAGGTTTTATCTGGACTAGGGGTAGATGATGATCAGCTACTAGCTGAGGCAGGCATTGCTGAAAGCACTCCCCGGAAGCACAGgtaatggatgcaaggaactggtctactatatcaagacacatgtcctgccc Alignment from GeneWise CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG atttagaacaaggacggatctcacttcctgacttcatcacctgcccaCAGACTAATGCCTGTCTTACAGGAAATTGGCGGTTCTCCCAGGTTTTATCTGGACTAGGGGTAGATGATGATCAGCTACTAGCTGAGGCAGGCATTGCTGAAAGCACTCCCCGGAAGCACAGgtaatggatgcaaggaactggtctactatatcaagacacatgtcctgccc #### Ttc9c_ID2391_2 --> 2 - 1 Original Alignment ccTGTCTCCTCCAGATGGAGCCAGTGAACTATGAACGAGTGAGGGAATACAGTCAGAAAGTCCTAGAACGACAACCCGATAATGCCAAGGCCTTGTATCGGGCTGGAGTAGCCTTCTTCCACCTGCAAGACTATGACCGGGCTCGACACCACCTGCTTGCTGCTGTCAATAGGCAACCTAAAg taaaggaaatctttgagtgcctcacatagtttttgactccttccttatagccTGTCTCCTCCAGACGGAGCCAGTGAACTATGAACGAGTAAGGGAATACAGTCAGAAAGTTCTGGAACAACAACCTGATAATGCCAAGGCCTTGTATCGGGCTGGTGTAGCATTCTTTCACCTACAAGACTATGATCAGGCTCGACACCATTTCCTTGCTGCTGTCAATAGGCAACCTAAAggtgagcaaggatcagcgtgcatccagatattattacaaagtcagtcctga Alignment from CESAR ccTGTCTCCTCCAGATGGAGCCAGTGAACTATGAACGAGTGAGGGAATACAGTCAGAAAGTCCTAGAACGACAACCCGATAATGCCAAGGCCTTGTATCGGGCTGGAGTAGCCTTCTTCCACCTGCAAGACTATGACCGGGCTCGACACCACCTGCTTGCTGCTGTCAATAGGCAACCTAAAg taaaggaaatctttgagtgcctcacatagtttttgactccttccttatagccTGTCTCCTCCAGACGGAGCCAGTGAACTATGAACGAGTAAGGGAATACAGTCAGAAAGTTCTGGAACAACAACCTGATAATGCCAAGGCCTTGTATCGGGCTGGTGTAGCATTCTTTCACCTACAAGACTATGATCAGGCTCGACACCATTTCCTTGCTGCTGTCAATAGGCAACCTAAAggtgagcaaggatcagcgtgcatccagatattattacaaagtcagtcctga Alignment from Spaln_aa2Genome CCTGTCTCCTCCAGATGGAGCCAGTGAACTATGAACGAGTGAGGGAATACAGTCAGAAAGTCCTAGAACGACAACCCGATAATGCCAAGGCCTTGTATCGGGCTGGAGTAGCCTTCTTCCACCTGCAAGACTATGACCGGGCTCGACACCACCTGCTTGCTGCTGTCAATAGGCAACCTAAAG taaaggaaatctttgagtgcctcacatagtttttgactccttccttatagCCTGTCTCCTCCAGACGGAGCCAGTGAACTATGAACGAGTAAGGGAATACAGTCAGAAAGTTCTGGAACAACAACCTGATAATGCCAAGGCCTTGTATCGGGCTGGTGTAGCATTCTTTCACCTACAAGACTATGATCAGGCTCGACACCATTTCCTTGCTGCTGTCAATAGGCAACCTAAAGgtgagcaaggatcagcgtgcatccagatattattacaaagtcagtcctga Alignment from Spaln_nt2Genome CCTGTCTCCTCCAGATGGAGCCAGTGAACTATGAACGAGTGAGGGAATACAGTCAGAAAGTCCTAGAACGACAACCCGATAATGCCAAGGCCTTGTATCGGGCTGGAGTAGCCTTCTTCCACCTGCAAGACTATGACCGGGCTCGACACCACCTGCTTGCTGCTGTCAATAGGCAACCTAAAG taaaggaaatctttgagtgcctcacatagtttttgactccttccttatagCCTGTCTCCTCCAGACGGAGCCAGTGAACTATGAACGAGTAAGGGAATACAGTCAGAAAGTTCTGGAACAACAACCTGATAATGCCAAGGCCTTGTATCGGGCTGGTGTAGCATTCTTTCACCTACAAGACTATGATCAGGCTCGACACCATTTCCTTGCTGCTGTCAATAGGCAACCTAAAGgtgagcaaggatcagcgtgcatccagatattattacaaagtcagtcctga Alignment from Pairagon CCTGTCTCCTCCAGATGGAGCCAGTGAACTATGAACGAGTGAGGGAATACAGTCAGAAAGTCCTAGAACGACAACCCGATAATGCCAAGGCCTTGTATCGGGCTGGAGTAGCCTTCTTCCACCTGCAAGACTATGACCGGGCTCGACACCACCTGCTTGCTGCTGTCAATAGGCAACCTAAAG taaaggaaatctttgagtgcctcacatagtttttgactccttccttatagCCTGTCTCCTCCAGACGGAGCCAGTGAACTATGAACGAGTAAGGGAATACAGTCAGAAAGTTCTGGAACAACAACCTGATAATGCCAAGGCCTTGTATCGGGCTGGTGTAGCATTCTTTCACCTACAAGACTATGATCAGGCTCGACACCATTTCCTTGCTGCTGTCAATAGGCAACCTAAAGgtgagcaaggatcagcgtgcatccagatattattacaaagtcagtcctga Alignment from Exonerate_protein2genome CCTGTCTCCTCCAGATGGAGCCAGTGAACTATGAACGAGTGAGGGAATACAGTCAGAAAGTCCTAGAACGACAACCCGATAATGCCAAGGCCTTGTATCGGGCTGGAGTAGCCTTCTTCCACCTGCAAGACTATGACCGGGCTCGACACCACCTGCTTGCTGCTGTCAATAGGCAACCTAAAG taaaggaaatctttgagtgcctcacatagtttttgactccttccttatagCCTGTCTCCTCCAGACGGAGCCAGTGAACTATGAACGAGTAAGGGAATACAGTCAGAAAGTTCTGGAACAACAACCTGATAATGCCAAGGCCTTGTATCGGGCTGGTGTAGCATTCTTTCACCTACAAGACTATGATCAGGCTCGACACCATTTCCTTGCTGCTGTCAATAGGCAACCTAAAGgtgagcaaggatcagcgtgcatccagatattattacaaagtcagtcctga Alignment from Exonerate_coding2genome CCTGTCTCCTCCAGATGGAGCCAGTGAACTATGAACGAGTGAGGGAATACAGTCAGAAAGTCCTAGAACGACAACCCGATAATGCCAAGGCCTTGTATCGGGCTGGAGTAGCCTTCTTCCACCTGCAAGACTATGACCGGGCTCGACACCACCTGCTTGCTGCTGTCAATAGGCAACCTAAAG taaaggaaatctttgagtgcctcacatagtttttgactccttccttatagCCTGTCTCCTCCAGACGGAGCCAGTGAACTATGAACGAGTAAGGGAATACAGTCAGAAAGTTCTGGAACAACAACCTGATAATGCCAAGGCCTTGTATCGGGCTGGTGTAGCATTCTTTCACCTACAAGACTATGATCAGGCTCGACACCATTTCCTTGCTGCTGTCAATAGGCAACCTAAAGgtgagcaaggatcagcgtgcatccagatattattacaaagtcagtcctga Alignment from GeneWise CCTGTCTCCTCCAGATGGAGCCAGTGAACTATGAACGAGTGAGGGAATACAGTCAGAAAGTCCTAGAACGACAACCCGATAATGCCAAGGCCTTGTATCGGGCTGGAGTAGCCTTCTTCCACCTGCAAGACTATGACCGGGCTCGACACCACCTGCTTGCTGCTGTCAATAGGCAACCTAAAG taaaggaaatctttgagtgcctcacatagtttttgactccttccttatagCCTGTCTCCTCCAGACGGAGCCAGTGAACTATGAACGAGTAAGGGAATACAGTCAGAAAGTTCTGGAACAACAACCTGATAATGCCAAGGCCTTGTATCGGGCTGGTGTAGCATTCTTTCACCTACAAGACTATGATCAGGCTCGACACCATTTCCTTGCTGCTGTCAATAGGCAACCTAAAGgtgagcaaggatcagcgtgcatccagatattattacaaagtcagtcctga #### Ubxn1_ID2443_7 --> 0 - 0 Original Alignment TATGGTGGTAGTGTGGGTTCTCGGTCATCCCCACCAGCAACAGACCCAGGTCCTGTTCCTTCTTCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAG ttatatacctgatgaataaatagggcccatacccactttaatgtttccagTGTGGTGGCAGTGTGGGTTCGCGGACATCCCCACCAGCAACTGACCCAGGTCCTGTACCATCTCCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAAgtaggatatccaggtgaccatcttcctgaggactttcatgtaaccttcaa Alignment from CESAR TATGGTGGTAGTGTGGGTTCTCGGTCATCCCCACCAGCAACAGACCCAGGTCCTGTTCCTTCTTCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAG ttatatacctgatgaataaatagggcccatacccactttaatgtttccagTGTGGTGGCAGTGTGGGTTCGCGGACATCCCCACCAGCAACTGACCCAGGTCCTGTACCATCTCCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAAgtaggatatccaggtgaccatcttcctgaggactttcatgtaaccttcaa Alignment from Spaln_aa2Genome TATGGTGGTAGTGTGGGTTCTCGGTCATCCCCACCAGCAACAGACCCAGGTCCTGTTCCTTCTTCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAG ttatatacctgatgaataaatagggcccatacccactttaatgtttccagTGTGGTGGCAGTGTGGGTTCGCGGACATCCCCACCAGCAACTGACCCAGGTCCTGTACCATCTCCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAAgtaggatatccaggtgaccatcttcctgaggactttcatgtaaccttcaa Alignment from Spaln_nt2Genome TATGGTGGTAGTGTGGGTTCTCGGTCATCCCCACCAGCAACAGACCCAGGTCCTGTTCCTTCTTCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAG ttatatacctgatgaataaatagggcccatacccactttaatgtttccagTGTGGTGGCAGTGTGGGTTCGCGGACATCCCCACCAGCAACTGACCCAGGTCCTGTACCATCTCCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAAgtaggatatccaggtgaccatcttcctgaggactttcatgtaaccttcaa Alignment from Pairagon TATGGTGGTAGTGTGGGTTCTCGGTCATCCCCACCAGCAACAGACCCAGGTCCTGTTCCTTCTTCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAG ttatatacctgatgaataaatagggcccatacccactttaatgtttccagTGTGGTGGCAGTGTGGGTTCGCGGACATCCCCACCAGCAACTGACCCAGGTCCTGTACCATCTCCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAAgtaggatatccaggtgaccatcttcctgaggactttcatgtaaccttcaa Alignment from Exonerate_protein2genome TATGGTGGTAGTGTGGGTTCTCGGTCATCCCCACCAGCAACAGACCCAGGTCCTGTTCCTTCTTCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAG ttatatacctgatgaataaatagggcccatacccactttaatgtttccagTGTGGTGGCAGTGTGGGTTCGCGGACATCCCCACCAGCAACTGACCCAGGTCCTGTACCATCTCCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAAgtaggatatccaggtgaccatcttcctgaggactttcatgtaaccttcaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TATGGTGGTAGTGTGGGTTCTCGGTCATCCCCACCAGCAACAGACCCAGGTCCTGTTCCTTCTTCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAG ttatatacctgatgaataaatagggcccatacccactttaatgtttccagTGTGGTGGCAGTGTGGGTTCGCGGACATCCCCACCAGCAACTGACCCAGGTCCTGTACCATCTCCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAAgtaggatatccaggtgaccatcttcctgaggactttcatgtaaccttcaa #### Uhrf2_ID6381_11 --> 1 - 0 Original Alignment gGCATTGGCCCTAAACTGTGATGCTCCATTGGATGATAAAATTGGAGCAGAGTCTCGGAATTGGAGAGCTGGTAAGCCCGTCAGAGTGATACGCAGTTTTAAAGGGAGGAAGATCAGCAAATATGCTCCAGAAGAAGGCAACAGATATGATGGCATTTATAAG ccacattctatactttagattgttatgattatctttcttcttcctctcaggGCATTGGCTTTGAACTGTGATGCCCCATTGGAAGATAAAATTGGAGCAGAGTCTCGGAATTGGAGAGCTGGTAAGCCTGTCAGGGTGATTCGAAGTTTTAAAGGGAGGAAGATTAGCAAATATGCTCCAGAAGAAGGCAACAGGTATGATGGGATTTATAAGgtaagagacaagcatcttgttgggaccatagtgttgagctagtcatcact Alignment from CESAR gGCATTGGCCCTAAACTGTGATGCTCCATTGGATGATAAAATTGGAGCAGAGTCTCGGAATTGGAGAGCTGGTAAGCCCGTCAGAGTGATACGCAGTTTTAAAGGGAGGAAGATCAGCAAATATGCTCCAGAAGAAGGCAACAGATATGATGGCATTTATAAG ccacattctatactttagattgttatgattatctttcttcttcctctcaggGCATTGGCTTTGAACTGTGATGCCCCATTGGAAGATAAAATTGGAGCAGAGTCTCGGAATTGGAGAGCTGGTAAGCCTGTCAGGGTGATTCGAAGTTTTAAAGGGAGGAAGATTAGCAAATATGCTCCAGAAGAAGGCAACAGGTATGATGGGATTTATAAGgtaagagacaagcatcttgttgggaccatagtgttgagctagtcatcact Alignment from Spaln_aa2Genome GGCATTGGCCCTAAACTGTGATGCTCCATTGGATGATAAAATTGGAGCAGAGTCTCGGAATTGGAGAGCTGGTAAGCCCGTCAGAGTGATACGCAGTTTTAAAGGGAGGAAGATCAGCAAATATGCTCCAGAAGAAGGCAACAGATATGATGGCATTTATAAG ccacattctatactttagattgttatgattatctttcttcttcctctcagGGCATTGGCTTTGAACTGTGATGCCCCATTGGAAGATAAAATTGGAGCAGAGTCTCGGAATTGGAGAGCTGGTAAGCCTGTCAGGGTGATTCGAAGTTTTAAAGGGAGGAAGATTAGCAAATATGCTCCAGAAGAAGGCAACAGGTATGATGGGATTTATAAGgtaagagacaagcatcttgttgggaccatagtgttgagctagtcatcact Alignment from Spaln_nt2Genome GGCATTGGCCCTAAACTGTGATGCTCCATTGGATGATAAAATTGGAGCAGAGTCTCGGAATTGGAGAGCTGGTAAGCCCGTCAGAGTGATACGCAGTTTTAAAGGGAGGAAGATCAGCAAATATGCTCCAGAAGAAGGCAACAGATATGATGGCATTTATAAG ccacattctatactttagattgttatgattatctttcttcttcctctcagGGCATTGGCTTTGAACTGTGATGCCCCATTGGAAGATAAAATTGGAGCAGAGTCTCGGAATTGGAGAGCTGGTAAGCCTGTCAGGGTGATTCGAAGTTTTAAAGGGAGGAAGATTAGCAAATATGCTCCAGAAGAAGGCAACAGGTATGATGGGATTTATAAGgtaagagacaagcatcttgttgggaccatagtgttgagctagtcatcact Alignment from Pairagon GGCATTGGCCCTAAACTGTGATGCTCCATTGGATGATAAAATTGGAGCAGAGTCTCGGAATTGGAGAGCTGGTAAGCCCGTCAGAGTGATACGCAGTTTTAAAGGGAGGAAGATCAGCAAATATGCTCCAGAAGAAGGCAACAGATATGATGGCATTTATAAG ccacattctatactttagattgttatgattatctttcttcttcctctcagGGCATTGGCTTTGAACTGTGATGCCCCATTGGAAGATAAAATTGGAGCAGAGTCTCGGAATTGGAGAGCTGGTAAGCCTGTCAGGGTGATTCGAAGTTTTAAAGGGAGGAAGATTAGCAAATATGCTCCAGAAGAAGGCAACAGGTATGATGGGATTTATAAGgtaagagacaagcatcttgttgggaccatagtgttgagctagtcatcact Alignment from Exonerate_protein2genome GGCATTGGCCCTAAACTGTGATGCTCCATTGGATGATAAAATTGGAGCAGAGTCTCGGAATTGGAGAGCTGGTAAGCCCGTCAGAGTGATACGCAGTTTTAAAGGGAGGAAGATCAGCAAATATGCTCCAGAAGAAGGCAACAGATATGATGGCATTTATAAG ccacattctatactttagattgttatgattatctttcttcttcctctcagGGCATTGGCTTTGAACTGTGATGCCCCATTGGAAGATAAAATTGGAGCAGAGTCTCGGAATTGGAGAGCTGGTAAGCCTGTCAGGGTGATTCGAAGTTTTAAAGGGAGGAAGATTAGCAAATATGCTCCAGAAGAAGGCAACAGGTATGATGGGATTTATAAGgtaagagacaagcatcttgttgggaccatagtgttgagctagtcatcact Alignment from Exonerate_coding2genome GGCATTGGCCCTAAACTGTGATGCTCCATTGGATGATAAAATTGGAGCAGAGTCTCGGAATTGGAGAGCTGGTAAGCCCGTCAGAGTGATACGCAGTTTTAAAGGGAGGAAGATCAGCAAATATGCTCCAGAAGAAGGCAACAGATATGATGGCATTTATAAG ccacattctatactttagattgttatgattatctttcttcttcctctcagGGCATTGGCTTTGAACTGTGATGCCCCATTGGAAGATAAAATTGGAGCAGAGTCTCGGAATTGGAGAGCTGGTAAGCCTGTCAGGGTGATTCGAAGTTTTAAAGGGAGGAAGATTAGCAAATATGCTCCAGAAGAAGGCAACAGGTATGATGGGATTTATAAGgtaagagacaagcatcttgttgggaccatagtgttgagctagtcatcact Alignment from GeneWise GGCATTGGCCCTAAACTGTGATGCTCCATTGGATGATAAAATTGGAGCAGAGTCTCGGAATTGGAGAGCTGGTAAGCCCGTCAGAGTGATACGCAGTTTTAAAGGGAGGAAGATCAGCAAATATGCTCCAGAAGAAGGCAACAGATATGATGGCATTTATAAG ccacattctatactttagattgttatgattatctttcttcttcctctcagGGCATTGGCTTTGAACTGTGATGCCCCATTGGAAGATAAAATTGGAGCAGAGTCTCGGAATTGGAGAGCTGGTAAGCCTGTCAGGGTGATTCGAAGTTTTAAAGGGAGGAAGATTAGCAAATATGCTCCAGAAGAAGGCAACAGGTATGATGGGATTTATAAGgtaagagacaagcatcttgttgggaccatagtgttgagctagtcatcact #### Uhrf2_ID6385_15 --> 0 - 0 Original Alignment AATTTTCTGAAGAAATTGGAACAATCTTTTATGTGTGTGTGCTGCCAAGAACTAGTTTACCAGCCTGTCACAACTGAATGCTTTCACAACGTCTGTAAG ctgatgacacagggtaaatctaatcatgtgcaccccttctctcttggcagAATTTCCTGAAAAAACTTGAACAGTCTTTTATGTGTGTGTGTTGCAAAGAACTTGTTTACCAGCCTGTCACGGCTGAATGCTTCCACAACATCTGTAAGgtaagattagcctaaggatccttttagaggccttgcagagggaatatgct Alignment from CESAR AATTTTCTGAAGAAATTGGAACAATCTTTTATGTGTGTGTGCTGCCAAGAACTAGTTTACCAGCCTGTCACAACTGAATGCTTTCACAACGTCTGTAAG ctgatgacacagggtaaatctaatcatgtgcaccccttctctcttggcagAATTTCCTGAAAAAACTTGAACAGTCTTTTATGTGTGTGTGTTGCAAAGAACTTGTTTACCAGCCTGTCACGGCTGAATGCTTCCACAACATCTGTAAGgtaagattagcctaaggatccttttagaggccttgcagagggaatatgct Alignment from Spaln_aa2Genome AATTTTCTGAAGAAATTGGAACAATCTTTTATGTGTGTGTGCTGCCAAGAACTAGTTTACCAGCCTGTCACAACTGAATGCTTTCACAACGTCTGTAAG ctgatgacacagggtaaatctaatcatgtgcaccccttctctcttggcagAATTTCCTGAAAAAACTTGAACAGTCTTTTATGTGTGTGTGTTGCAAAGAACTTGTTTACCAGCCTGTCACGGCTGAATGCTTCCACAACATCTGTAAGgtaagattagcctaaggatccttttagaggccttgcagagggaatatgct Alignment from Spaln_nt2Genome AATTTTCTGAAGAAATTGGAACAATCTTTTATGTGTGTGTGCTGCCAAGAACTAGTTTACCAGCCTGTCACAACTGAATGCTTTCACAACGTCTGTAAG ctgatgacacagggtaaatctaatcatgtgcaccccttctctcttggcagAATTTCCTGAAAAAACTTGAACAGTCTTTTATGTGTGTGTGTTGCAAAGAACTTGTTTACCAGCCTGTCACGGCTGAATGCTTCCACAACATCTGTAAGgtaagattagcctaaggatccttttagaggccttgcagagggaatatgct Alignment from Pairagon AATTTTCTGAAGAAATTGGAACAATCTTTTATGTGTGTGTGCTGCCAAGAACTAGTTTACCAGCCTGTCACAACTGAATGCTTTCACAACGTCTGTAAG ctgatgacacagggtaaatctaatcatgtgcaccccttctctcttggcagAATTTCCTGAAAAAACTTGAACAGTCTTTTATGTGTGTGTGTTGCAAAGAACTTGTTTACCAGCCTGTCACGGCTGAATGCTTCCACAACATCTGTAAGgtaagattagcctaaggatccttttagaggccttgcagagggaatatgct Alignment from Exonerate_protein2genome AATTTTCTGAAGAAATTGGAACAATCTTTTATGTGTGTGTGCTGCCAAGAACTAGTTTACCAGCCTGTCACAACTGAATGCTTTCACAACGTCTGTAAG ctgatgacacagggtaaatctaatcatgtgcaccccttctctcttggcagAATTTCCTGAAAAAACTTGAACAGTCTTTTATGTGTGTGTGTTGCAAAGAACTTGTTTACCAGCCTGTCACGGCTGAATGCTTCCACAACATCTGTAAGgtaagattagcctaaggatccttttagaggccttgcagagggaatatgct Alignment from Exonerate_coding2genome AATTTTCTGAAGAAATTGGAACAATCTTTTATGTGTGTGTGCTGCCAAGAACTAGTTTACCAGCCTGTCACAACTGAATGCTTTCACAACGTCTGTAAG ctgatgacacagggtaaatctaatcatgtgcaccccttctctcttggcagAATTTCCTGAAAAAACTTGAACAGTCTTTTATGTGTGTGTGTTGCAAAGAACTTGTTTACCAGCCTGTCACGGCTGAATGCTTCCACAACATCTGTAAGgtaagattagcctaaggatccttttagaggccttgcagagggaatatgct Alignment from GeneWise AATTTTCTGAAGAAATTGGAACAATCTTTTATGTGTGTGTGCTGCCAAGAACTAGTTTACCAGCCTGTCACAACTGAATGCTTTCACAACGTCTGTAAG ctgatgacacagggtaaatctaatcatgtgcaccccttctctcttggcagAATTTCCTGAAAAAACTTGAACAGTCTTTTATGTGTGTGTGTTGCAAAGAACTTGTTTACCAGCCTGTCACGGCTGAATGCTTCCACAACATCTGTAAGgtaagattagcctaaggatccttttagaggccttgcagagggaatatgct #### Unc93b1_ID213_4 --> 1 - 2 Original Alignment gTTTTTTGGTACCAAGTGGATGATGTTCTTGGCTGTGGGCATCTATGCCCTCTTTGTCTCTACCAACTACTGGGAACGCTACTACACGCTGGTGCCCTCTGCTGTGGCTCTGGGCATGGCCATTGTGCCTCTGTGGGCCTCCATGGGCAACTATATCACCag attaatgagcctgggggttttgtaaaattatcacacttcttctctcccaggTTTTTTGGTACAAAGTGGATGATGTTCCTGGCTGTAGGCATCTATGCCCTCTTTGTTTTTACCAACTACTGGGAACGCTACTACACACTTGAGCCTTCAGCTGTGGCCCTAGCCATGGCCATTGTGCCCCTATGGGCATCCATGGGCACCCATATAACCaggtaaggatggacactgacacctatatgacttccattgcttgggggaagag Alignment from CESAR gTTTTTTGGTACCAAGTGGATGATGTTCTTGGCTGTGGGCATCTATGCCCTCTTTGTCTCTACCAACTACTGGGAACGCTACTACACGCTGGTGCCCTCTGCTGTGGCTCTGGGCATGGCCATTGTGCCTCTGTGGGCCTCCATGGGCAACTATATCACCag attaatgagcctgggggttttgtaaaattatcacacttcttctctcccaggTTTTTTGGTACAAAGTGGATGATGTTCCTGGCTGTAGGCATCTATGCCCTCTTTGTTTTTACCAACTACTGGGAACGCTACTACACACTTGAGCCTTCAGCTGTGGCCCTAGCCATGGCCATTGTGCCCCTATGGGCATCCATGGGCACCCATATAACCaggtaaggatggacactgacacctatatgacttccattgcttgggggaagag Alignment from Spaln_aa2Genome GTTTTTTGGTACCAAGTGGATGATGTTCTTGGCTGTGGGCATCTATGCCCTCTTTGTCTCTACCAACTACTGGGAACGCTACTACACGCTGGTGCCCTCTGCTGTGGCTCTGGGCATGGCCATTGTGCCTCTGTGGGCCTCCATGGGCAACTATATCACCAG attaatgagcctgggggttttgtaaaattatcacacttcttctctcccagGTTTTTTGGTACAAAGTGGATGATGTTCCTGGCTGTAGGCATCTATGCCCTCTTTGTTTTTACCAACTACTGGGAACGCTACTACACACTTGAGCCTTCAGCTGTGGCCCTAGCCATGGCCATTGTGCCCCTATGGGCATCCATGGGCACCCATATAACCAGgtaaggatggacactgacacctatatgacttccattgcttgggggaagag Alignment from Spaln_nt2Genome GTTTTTTGGTACCAAGTGGATGATGTTCTTGGCTGTGGGCATCTATGCCCTCTTTGTCTCTACCAACTACTGGGAACGCTACTACACGCTGGTGCCCTCTGCTGTGGCTCTGGGCATGGCCATTGTGCCTCTGTGGGCCTCCATGGGCAACTATATCACCAG attaatgagcctgggggttttgtaaaattatcacacttcttctctcccagGTTTTTTGGTACAAAGTGGATGATGTTCCTGGCTGTAGGCATCTATGCCCTCTTTGTTTTTACCAACTACTGGGAACGCTACTACACACTTGAGCCTTCAGCTGTGGCCCTAGCCATGGCCATTGTGCCCCTATGGGCATCCATGGGCACCCATATAACCAGgtaaggatggacactgacacctatatgacttccattgcttgggggaagag Alignment from Pairagon GTTTTTTGGTACCAAGTGGATGATGTTCTTGGCTGTGGGCATCTATGCCCTCTTTGTCTCTACCAACTACTGGGAACGCTACTACACGCTGGTGCCCTCTGCTGTGGCTCTGGGCATGGCCATTGTGCCTCTGTGGGCCTCCATGGGCAACTATATCACCAG attaatgagcctgggggttttgtaaaattatcacacttcttctctcccagGTTTTTTGGTACAAAGTGGATGATGTTCCTGGCTGTAGGCATCTATGCCCTCTTTGTTTTTACCAACTACTGGGAACGCTACTACACACTTGAGCCTTCAGCTGTGGCCCTAGCCATGGCCATTGTGCCCCTATGGGCATCCATGGGCACCCATATAACCAGgtaaggatggacactgacacctatatgacttccattgcttgggggaagag Alignment from Exonerate_protein2genome GTTTTTTGGTACCAAGTGGATGATGTTCTTGGCTGTGGGCATCTATGCCCTCTTTGTCTCTACCAACTACTGGGAACGCTACTACACGCTGGTGCCCTCTGCTGTGGCTCTGGGCATGGCCATTGTGCCTCTGTGGGCCTCCATGGGCAACTATATCACCAG attaatgagcctgggggttttgtaaaattatcacacttcttctctcccagGTTTTTTGGTACAAAGTGGATGATGTTCCTGGCTGTAGGCATCTATGCCCTCTTTGTTTTTACCAACTACTGGGAACGCTACTACACACTTGAGCCTTCAGCTGTGGCCCTAGCCATGGCCATTGTGCCCCTATGGGCATCCATGGGCACCCATATAACCAGgtaaggatggacactgacacctatatgacttccattgcttgggggaagag Alignment from Exonerate_coding2genome GTTTTTTGGTACCAAGTGGATGATGTTCTTGGCTGTGGGCATCTATGCCCTCTTTGTCTCTACCAACTACTGGGAACGCTACTACACGCTGGTGCCCTCTGCTGTGGCTCTGGGCATGGCCATTGTGCCTCTGTGGGCCTCCATGGGCAACTATATCACCAG attaatgagcctgggggttttgtaaaattatcacacttcttctctcccagGTTTTTTGGTACAAAGTGGATGATGTTCCTGGCTGTAGGCATCTATGCCCTCTTTGTTTTTACCAACTACTGGGAACGCTACTACACACTTGAGCCTTCAGCTGTGGCCCTAGCCATGGCCATTGTGCCCCTATGGGCATCCATGGGCACCCATATAACCAGgtaaggatggacactgacacctatatgacttccattgcttgggggaagag Alignment from GeneWise GTTTTTTGGTACCAAGTGGATGATGTTCTTGGCTGTGGGCATCTATGCCCTCTTTGTCTCTACCAACTACTGGGAACGCTACTACACGCTGGTGCCCTCTGCTGTGGCTCTGGGCATGGCCATTGTGCCTCTGTGGGCCTCCATGGGCAACTATATCACCAG attaatgagcctgggggttttgtaaaattatcacacttcttctctcccagGTTTTTTGGTACAAAGTGGATGATGTTCCTGGCTGTAGGCATCTATGCCCTCTTTGTTTTTACCAACTACTGGGAACGCTACTACACACTTGAGCCTTCAGCTGTGGCCCTAGCCATGGCCATTGTGCCCCTATGGGCATCCATGGGCACCCATATAACCAGgtaaggatggacactgacacctatatgacttccattgcttgggggaagag #### Unc93b1_ID214_5 --> 1 - 0 Original Alignment gATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC gaggaaaaaactgtcatagtaggcagctttttttttttttaccattccaggATGTCCCAGAAGTACTACGAATATTCACATTACAAGGAGCAGGATGACCAGGGACCTCAACAACGCCCACCACGTGGACCACACACACCTTTTCTGCTGGTTTTCCATACTAACTTTTATAGTTTCTTGCATgtacgtgtgcttcaggaagcccttgtagggggtgggcataagaaactggg Alignment from CESAR gATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC gaggaaaaaactgtcatagtaggcagctttttttttttttaccattccaggATGTCCCAGAAGTACTACGAATATTCACATTACAAGGAGCAGGATGACCAGGGACCTCAACAACGCCCACCACGTGGACCACACACACCTTTTCTGCTGGTTTTCCATACTAACTTTTATAGTTTCTTGCATgtacgtgtgcttcaggaagcccttgtagggggtgggcataagaaactggg Alignment from Spaln_aa2Genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC gaggaaaaaactgtcatagtaggcagctttttttttttttaccattccagGATGTCCCAGAAGTACTACGAATATTCACATTACAAGGAGCAGGATGACCAGGGACCTCAACAACGCCCACCACGTGGACCACACACACCTTTTCTGCTGGTTTTCCATACTAACTTTTATAGTTTCTTGCATgtacgtgtgcttcaggaagcccttgtagggggtgggcataagaaactggg Alignment from Spaln_nt2Genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC gaggaaaaaactgtcatagtaggcagctttttttttttttaccattccagGATGTCCCAGAAGTACTACGAATATTCACATTACAAGGAGCAGGATGACCAGGGACCTCAACAACGCCCACCACGTGGACCACACACACCTTTTCTGCTGGTTTTCCATACTAACTTTTATAGTTTCTTGCATgtacgtgtgcttcaggaagcccttgtagggggtgggcataagaaactggg Alignment from Pairagon GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC gaggaaaaaactgtcatagtaggcagctttttttttttttaccattccagGATGTCCCAGAAGTACTACGAATATTCACATTACAAGGAGCAGGATGACCAGGGACCTCAACAACGCCCACCACGTGGACCACACACACCTTTTCTGCTGGTTTTCCATACTAACTTTTATAGTTTCTTGCATgtacgtgtgcttcaggaagcccttgtagggggtgggcataagaaactggg Alignment from Exonerate_protein2genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC gaggaaaaaactgtcatagtaggcagctttttttttttttaccattccagGATGTCCCAGAAGTACTACGAATATTCACATTACAAGGAGCAGGATGACCAGGGACCTCAACAACGCCCACCACGTGGACCACACACACCTTTTCTGCTGGTTTTCCATACTAACTTTTATAGTTTCTTGCATgtacgtgtgcttcaggaagcccttgtagggggtgggcataagaaactggg Alignment from Exonerate_coding2genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC gaggaaaaaactgtcatagtaggcagctttttttttttttaccattccagGATGTCCCAGAAGTACTACGAATATTCACATTACAAGGAGCAGGATGACCAGGGACCTCAACAACGCCCACCACGTGGACCACACACACCTTTTCTGCTGGTTTTCCATACTAACTTTTATAGTTTCTTGCATgtacgtgtgcttcaggaagcccttgtagggggtgggcataagaaactggg Alignment from GeneWise GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC gaggaaaaaactgtcatagtaggcagctttttttttttttaccattccagGATGTCCCAGAAGTACTACGAATATTCACATTACAAGGAGCAGGATGACCAGGGACCTCAACAACGCCCACCACGTGGACCACACACACCTTTTCTGCTGGTTTTCCATACTAACTTTTATAGTTTCTTGCATgtacgtgtgcttcaggaagcccttgtagggggtgggcataagaaactggg #### Unc93b1_ID216_7 --> 2 - 0 Original Alignment gtACTAAGAGCCAAGGCATTCTGAATGGCTTCAACAAGACGGTCCTTCGGACGCTGCCGCGCAGCAAAAACCTTATTGTTGTAGAGAGCGTGCTCATGGCGGTGGCCTTCTTGGCCATGCTGATG cagtgcaatttagtctgttggtaccatacctgtttcctctgtccctccaggtACTCGGAGCCAAGGTATTCTAAATGGCTTTAACAATACACTTCTCTGTACATTGCCACGCAGCAAAAACCTTATTATTGTCGCAAGTGTGCTCATGACTGTGGCCTTCTTAACCATCCTGATGgtaagactagagggggtaataaattgcgggagattctaccctgtaggctt Alignment from CESAR gtACTAAGAGCCAAGGCATTCTGAATGGCTTCAACAAGACGGTCCTTCGGACGCTGCCGCGCAGCAAAAACCTTATTGTTGTAGAGAGCGTGCTCATGGCGGTGGCCTTCTTGGCCATGCTGATG cagtgcaatttagtctgttggtaccatacctgtttcctctgtccctccaggtACTCGGAGCCAAGGTATTCTAAATGGCTTTAACAATACACTTCTCTGTACATTGCCACGCAGCAAAAACCTTATTATTGTCGCAAGTGTGCTCATGACTGTGGCCTTCTTAACCATCCTGATGgtaagactagagggggtaataaattgcgggagattctaccctgtaggctt Alignment from Spaln_aa2Genome GTACTAAGAGCCAAGGCATTCTGAATGGCTTCAACAAGACGGTCCTTCGGACGCTGCCGCGCAGCAAAAACCTTATTGTTGTAGAGAGCGTGCTCATGGCGGTGGCCTTCTTGGCCATGCTGATG cagtgcaatttagtctgttggtaccatacctgtttcctctgtccctccagGTACTCGGAGCCAAGGTATTCTAAATGGCTTTAACAATACACTTCTCTGTACATTGCCACGCAGCAAAAACCTTATTATTGTCGCAAGTGTGCTCATGACTGTGGCCTTCTTAACCATCCTGATGgtaagactagagggggtaataaattgcgggagattctaccctgtaggctt Alignment from Spaln_nt2Genome GTACTAAGAGCCAAGGCATTCTGAATGGCTTCAACAAGACGGTCCTTCGGACGCTGCCGCGCAGCAAAAACCTTATTGTTGTAGAGAGCGTGCTCATGGCGGTGGCCTTCTTGGCCATGCTGATG cagtgcaatttagtctgttggtaccatacctgtttcctctgtccctccagGTACTCGGAGCCAAGGTATTCTAAATGGCTTTAACAATACACTTCTCTGTACATTGCCACGCAGCAAAAACCTTATTATTGTCGCAAGTGTGCTCATGACTGTGGCCTTCTTAACCATCCTGATGgtaagactagagggggtaataaattgcgggagattctaccctgtaggctt Alignment from Pairagon GTACTAAGAGCCAAGGCATTCTGAATGGCTTCAACAAGACGGTCCTTCGGACGCTGCCGCGCAGCAAAAACCTTATTGTTGTAGAGAGCGTGCTCATGGCGGTGGCCTTCTTGGCCATGCTGATG cagtgcaatttagtctgttggtaccatacctgtttcctctgtccctccagGTACTCGGAGCCAAGGTATTCTAAATGGCTTTAACAATACACTTCTCTGTACATTGCCACGCAGCAAAAACCTTATTATTGTCGCAAGTGTGCTCATGACTGTGGCCTTCTTAACCATCCTGATGgtaagactagagggggtaataaattgcgggagattctaccctgtaggctt Alignment from Exonerate_protein2genome GTACTAAGAGCCAAGGCATTCTGAATGGCTTCAACAAGACGGTCCTTCGGACGCTGCCGCGCAGCAAAAACCTTATTGTTGTAGAGAGCGTGCTCATGGCGGTGGCCTTCTTGGCCATGCTGATG cagtgcaatttagtctgttggtaccatacctgtttcctctgtccctccagGTACTCGGAGCCAAGGTATTCTAAATGGCTTTAACAATACACTTCTCTGTACATTGCCACGCAGCAAAAACCTTATTATTGTCGCAAGTGTGCTCATGACTGTGGCCTTCTTAACCATCCTGATGgtaagactagagggggtaataaattgcgggagattctaccctgtaggctt Alignment from Exonerate_coding2genome GTACTAAGAGCCAAGGCATTCTGAATGGCTTCAACAAGACGGTCCTTCGGACGCTGCCGCGCAGCAAAAACCTTATTGTTGTAGAGAGCGTGCTCATGGCGGTGGCCTTCTTGGCCATGCTGATG cagtgcaatttagtctgttggtaccatacctgtttcctctgtccctccagGTACTCGGAGCCAAGGTATTCTAAATGGCTTTAACAATACACTTCTCTGTACATTGCCACGCAGCAAAAACCTTATTATTGTCGCAAGTGTGCTCATGACTGTGGCCTTCTTAACCATCCTGATGgtaagactagagggggtaataaattgcgggagattctaccctgtaggctt Alignment from GeneWise GTACTAAGAGCCAAGGCATTCTGAATGGCTTCAACAAGACGGTCCTTCGGACGCTGCCGCGCAGCAAAAACCTTATTGTTGTAGAGAGCGTGCTCATGGCGGTGGCCTTCTTGGCCATGCTGATG cagtgcaatttagtctgttggtaccatacctgtttcctctgtccctccagGTACTCGGAGCCAAGGTATTCTAAATGGCTTTAACAATACACTTCTCTGTACATTGCCACGCAGCAAAAACCTTATTATTGTCGCAAGTGTGCTCATGACTGTGGCCTTCTTAACCATCCTGATGgtaagactagagggggtaataaattgcgggagattctaccctgtaggctt #### Vldlr_ID5806_5 --> 2 - 1 Original Alignment gcAACATAACATGTAGTGCAGATGAGTTCACTTGCTCCAGTGGCCGCTGCGTCTCCAGAAACTTTGTGTGCAATGGCCAGGATGACTGTGACGATGGCAGTGATGAGCTGGACTGTGCTCCACCAACCTGCGGAGCCCACGAGTTCCAGTGCAGCACCTCTTCCTGCATTCCCCTCAGCTGGGTGTGTGATGATGACGCAGACTGTTCAGACCAATCAGACGAGTCTCTTGAGCAGTGTGGCCGTCAGCCTGTGATACATACCAAATGTCCTACCAGTGAGATCCAGTGTGGCTCTGGCGAGTGCATTCACAAAAAATGGCGGTGTGACGGAGACCCTGACTGCAAGGACGGCAGCGATGAGGTCAACTGCc acctcccagagatagtgttgccagcaagttagggtgatctgtttttctaggaAACATAACATGTGGCGCAGATGAGTTTGCTTGTTCAAGTGGGCGCTTTGTTTCCAGAAACTTTGTGTGTAATGGACAGGATGACTGTGATGATGGCAGTGAAGAGTTAGACTGT---CCGCCAACTTGTGGGGCCCACAAGTTCCAGTGTAGCACCTCCTCCTGTATTCCCCTAGGGTGGGCATGTGACGATGACGCAGACTGCTCAGACCAATCAGATGAGTCACTTGACCCATGTGGCCGCCAGCCTGTGATACATACCAAATGTCCTACCAGCGAAATTCAATGTGGCTCTGGGAAGTGTATTCATAAAAAATGGCGATGTGATGGAGACCCTGACTGCAAGGATGGGAGTGATGAGGTAAACTGCcgtatgtaactcccagtgagaagtgggcacttcactctgactcctggtctc Alignment from CESAR gcAACATAACATGTAGTGCAGATGAGTTCACTTGCTCCAGTGGCCGCTGCGTCTCCAGAAACTTTGTGTGCAATGGCCAGGATGACTGTGACGATGGCAGTGATGAGCTGGACTGTGCTCCACCAACCTGCGGAGCCCACGAGTTCCAGTGCAGCACCTCTTCCTGCATTCCCCTCAGCTGGGTGTGTGATGATGACGCAGACTGTTCAGACCAATCAGACGAGTCTCTTGAGCAGTGTGGCCGTCAGCCTGTGATACATACCAAATGTCCTACCAGTGAGATCCAGTGTGGCTCTGGCGAGTGCATTCACAAAAAATGGCGGTGTGACGGAGACCCTGACTGCAAGGACGGCAGCGATGAGGTCAACTGCc acctcccagagatagtgttgccagcaagttagggtgatctgtttttctaggaAACATAACATGTGGCGCAGATGAGTTTGCTTGTTCAAGTGGGCGCTTTGTTTCCAGAAACTTTGTGTGTAATGGACAGGATGACTGTGATGATGGCAGTGAAGAGTTAGACTGT---CCGCCAACTTGTGGGGCCCACAAGTTCCAGTGTAGCACCTCCTCCTGTATTCCCCTAGGGTGGGCATGTGACGATGACGCAGACTGCTCAGACCAATCAGATGAGTCACTTGACCCATGTGGCCGCCAGCCTGTGATACATACCAAATGTCCTACCAGCGAAATTCAATGTGGCTCTGGGAAGTGTATTCATAAAAAATGGCGATGTGATGGAGACCCTGACTGCAAGGATGGGAGTGATGAGGTAAACTGCcgtatgtaactcccagtgagaagtgggcacttcactctgactcctggtctc Alignment from Spaln_aa2Genome GCAACATAACATGTAGTGCAGATGAGTTCACTTGCTCCAGTGGCCGCTGCGTCTCCAGAAACTTTGTGTGCAATGGCCAGGATGACTGTGACGATGGCAGTGATGAGCTGGACTGTGCTCCACCAACCTGCGGAGCCCACGAGTTCCAGTGCAGCACCTCTTCCTGCATTCCCCTCAGCTGGGTGTGTGATGATGACGCAGACTGTTCAGACCAATCAGACGAGTCTCTTGAGCAGTGTGGCCGTCAGCCTGTGATACATACCAAATGTCCTACCAGTGAGATCCAGTGTGGCTCTGGCGAGTGCATTCACAAAAAATGGCGGTGTGACGGAGACCCTGACTGCAAGGACGGCAGCGATGAGGTCAACTGCC acctcccagagatagtgttgccagcaagttagggtgatctgtttttctagGAAACATAACATGTGGCGCAGATGAGTTTGCTTGTTCAAGTGGGCGCTTTGTTTCCAGAAACTTTGTGTGTAATGGACAGGATGACTGTGATGATGGCAGTGAAGAGTTAGACTGTCCG---CCAACTTGTGGGGCCCACAAGTTCCAGTGTAGCACCTCCTCCTGTATTCCCCTAGGGTGGGCATGTGACGATGACGCAGACTGCTCAGACCAATCAGATGAGTCACTTGACCCATGTGGCCGCCAGCCTGTGATACATACCAAATGTCCTACCAGCGAAATTCAATGTGGCTCTGGGAAGTGTATTCATAAAAAATGGCGATGTGATGGAGACCCTGACTGCAAGGATGGGAGTGATGAGGTAAACTGCCgtatgtaactcccagtgagaagtgggcacttcactctgactcctggtctc Alignment from Spaln_nt2Genome GCAACATAACATGTAGTGCAGATGAGTTCACTTGCTCCAGTGGCCGCTGCGTCTCCAGAAACTTTGTGTGCAATGGCCAGGATGACTGTGACGATGGCAGTGATGAGCTGGACTGTGCTCCACCAACCTGCGGAGCCCACGAGTTCCAGTGCAGCACCTCTTCCTGCATTCCCCTCAGCTGGGTGTGTGATGATGACGCAGACTGTTCAGACCAATCAGACGAGTCTCTTGAGCAGTGTGGCCGTCAGCCTGTGATACATACCAAATGTCCTACCAGTGAGATCCAGTGTGGCTCTGGCGAGTGCATTCACAAAAAATGGCGGTGTGACGGAGACCCTGACTGCAAGGACGGCAGCGATGAGGTCAACTGCC acctcccagagatagtgttgccagcaagttagggtgatctgtttttctagGAAACATAACATGTGGCGCAGATGAGTTTGCTTGTTCAAGTGGGCGCTTTGTTTCCAGAAACTTTGTGTGTAATGGACAGGATGACTGTGATGATGGCAGTGAAGAGTTAGACTG---TCCGCCAACTTGTGGGGCCCACAAGTTCCAGTGTAGCACCTCCTCCTGTATTCCCCTAGGGTGGGCATGTGACGATGACGCAGACTGCTCAGACCAATCAGATGAGTCACTTGACCCATGTGGCCGCCAGCCTGTGATACATACCAAATGTCCTACCAGCGAAATTCAATGTGGCTCTGGGAAGTGTATTCATAAAAAATGGCGATGTGATGGAGACCCTGACTGCAAGGATGGGAGTGATGAGGTAAACTGCCgtatgtaactcccagtgagaagtgggcacttcactctgactcctggtctc Alignment from Pairagon GCAACATAACATGTAGTGCAGATGAGTTCACTTGCTCCAGTGGCCGCTGCGTCTCCAGAAACTTTGTGTGCAATGGCCAGGATGACTGTGACGATGGCAGTGATGAGCTGGACTGTGCTCCACCAACCTGCGGAGCCCACGAGTTCCAGTGCAGCACCTCTTCCTGCATTCCCCTCAGCTGGGTGTGTGATGATGACGCAGACTGTTCAGACCAATCAGACGAGTCTCTTGAGCAGTGTGGCCGTCAGCCTGTGATACATACCAAATGTCCTACCAGTGAGATCCAGTGTGGCTCTGGCGAGTGCATTCACAAAAAATGGCGGTGTGACGGAGACCCTGACTGCAAGGACGGCAGCGATGAGGTCAACTGCC acctcccagagatagtgttgccagcaagttagggtgatctgtttttctagGAAACATAACATGTGGCGCAGATGAGTTTGCTTGTTCAAGTGGGCGCTTTGTTTCCAGAAACTTTGTGTGTAATGGACAGGATGACTGTGATGATGGCAGTGAAGAGTTAGACTG---TCCGCCAACTTGTGGGGCCCACAAGTTCCAGTGTAGCACCTCCTCCTGTATTCCCCTAGGGTGGGCATGTGACGATGACGCAGACTGCTCAGACCAATCAGATGAGTCACTTGACCCATGTGGCCGCCAGCCTGTGATACATACCAAATGTCCTACCAGCGAAATTCAATGTGGCTCTGGGAAGTGTATTCATAAAAAATGGCGATGTGATGGAGACCCTGACTGCAAGGATGGGAGTGATGAGGTAAACTGCCgtatgtaactcccagtgagaagtgggcacttcactctgactcctggtctc Alignment from Exonerate_protein2genome GCAACATAACATGTAGTGCAGATGAGTTCACTTGCTCCAGTGGCCGCTGCGTCTCCAGAAACTTTGTGTGCAATGGCCAGGATGACTGTGACGATGGCAGTGATGAGCTGGACTGTGCTCCACCAACCTGCGGAGCCCACGAGTTCCAGTGCAGCACCTCTTCCTGCATTCCCCTCAGCTGGGTGTGTGATGATGACGCAGACTGTTCAGACCAATCAGACGAGTCTCTTGAGCAGTGTGGCCGTCAGCCTGTGATACATACCAAATGTCCTACCAGTGAGATCCAGTGTGGCTCTGGCGAGTGCATTCACAAAAAATGGCGGTGTGACGGAGACCCTGACTGCAAGGACGGCAGCGATGAGGTCAACTGCC acctcccagagatagtgttgccagcaagttagggtgatctgtttttctagGAAACATAACATGTGGCGCAGATGAGTTTGCTTGTTCAAGTGGGCGCTTTGTTTCCAGAAACTTTGTGTGTAATGGACAGGATGACTGTGATGATGGCAGTGAAGAGTTAGACTGT---CCGCCAACTTGTGGGGCCCACAAGTTCCAGTGTAGCACCTCCTCCTGTATTCCCCTAGGGTGGGCATGTGACGATGACGCAGACTGCTCAGACCAATCAGATGAGTCACTTGACCCATGTGGCCGCCAGCCTGTGATACATACCAAATGTCCTACCAGCGAAATTCAATGTGGCTCTGGGAAGTGTATTCATAAAAAATGGCGATGTGATGGAGACCCTGACTGCAAGGATGGGAGTGATGAGGTAAACTGCCgtatgtaactcccagtgagaagtgggcacttcactctgactcctggtctc Alignment from Exonerate_coding2genome GCAACATAACATGTAGTGCAGATGAGTTCACTTGCTCCAGTGGCCGCTGCGTCTCCAGAAACTTTGTGTGCAATGGCCAGGATGACTGTGACGATGGCAGTGATGAGCTGGACTGTGCTCCACCAACCTGCGGAGCCCACGAGTTCCAGTGCAGCACCTCTTCCTGCATTCCCCTCAGCTGGGTGTGTGATGATGACGCAGACTGTTCAGACCAATCAGACGAGTCTCTTGAGCAGTGTGGCCGTCAGCCTGTGATACATACCAAATGTCCTACCAGTGAGATCCAGTGTGGCTCTGGCGAGTGCATTCACAAAAAATGGCGGTGTGACGGAGACCCTGACTGCAAGGACGGCAGCGATGAGGTCAACTGCC acctcccagagatagtgttgccagcaagttagggtgatctgtttttctagGAAACATAACATGTGGCGCAGATGAGTTTGCTTGTTCAAGTGGGCGCTTTGTTTCCAGAAACTTTGTGTGTAATGGACAGGATGACTGTGATGATGGCAGTGAAGAGTTAGACTGT---CCGCCAACTTGTGGGGCCCACAAGTTCCAGTGTAGCACCTCCTCCTGTATTCCCCTAGGGTGGGCATGTGACGATGACGCAGACTGCTCAGACCAATCAGATGAGTCACTTGACCCATGTGGCCGCCAGCCTGTGATACATACCAAATGTCCTACCAGCGAAATTCAATGTGGCTCTGGGAAGTGTATTCATAAAAAATGGCGATGTGATGGAGACCCTGACTGCAAGGATGGGAGTGATGAGGTAAACTGCCgtatgtaactcccagtgagaagtgggcacttcactctgactcctggtctc Alignment from GeneWise GCAACATAACATGTAGTGCAGATGAGTTCACTTGCTCCAGTGGCCGCTGCGTCTCCAGAAACTTTGTGTGCAATGGCCAGGATGACTGTGACGATGGCAGTGATGAGCTGGACTGTGCTCCACCAACCTGCGGAGCCCACGAGTTCCAGTGCAGCACCTCTTCCTGCATTCCCCTCAGCTGGGTGTGTGATGATGACGCAGACTGTTCAGACCAATCAGACGAGTCTCTTGAGCAGTGTGGCCGTCAGCCTGTGATACATACCAAATGTCCTACCAGTGAGATCCAGTGTGGCTCTGGCGAGTGCATTCACAAAAAATGGCGGTGTGACGGAGACCCTGACTGCAAGGACGGCAGCGATGAGGTCAACTGCC acctcccagagatagtgttgccagcaagttagggtgatctgtttttctagGAAACATAACATGTGGCGCAGATGAGTTTGCTTGTTCAAGTGGGCGCTTTGTTTCCAGAAACTTTGTGTGTAATGGACAGGATGACTGTGATGATGGCAGTGAAGAGTTAGACTGT---CCGCCAACTTGTGGGGCCCACAAGTTCCAGTGTAGCACCTCCTCCTGTATTCCCCTAGGGTGGGCATGTGACGATGACGCAGACTGCTCAGACCAATCAGATGAGTCACTTGACCCATGTGGCCGCCAGCCTGTGATACATACCAAATGTCCTACCAGCGAAATTCAATGTGGCTCTGGGAAGTGTATTCATAAAAAATGGCGATGTGATGGAGACCCTGACTGCAAGGATGGGAGTGATGAGGTAAACTGCCgtatgtaactcccagtgagaagtgggcacttcactctgactcctggtctc #### Vldlr_ID5808_7 --> 2 - 1 Original Alignment tcAATCAGTGCCTGGGCCCTGGAAAGTTCAAGTGCAGAAGCGGGGAATGCATAGACATGAGCAAAGTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCc tgccagaagagtgatagctttaaactttttatatcatgtgtattttatagttAATCAGTGCTTGGGCCCTGGAAAATTCAAGTGCAGGAGTGGTGAATGCATAGACATGAGCAAAGTATGTGATCAAGAACAAGACTGCAGAGACTGGAGTGATGAACCCCTGAAGGAATGCcgtgagtgagaggaatcaaacattgttgaattttttcaaagggttgaggaa Alignment from CESAR tcAATCAGTGCCTGGGCCCTGGAAAGTTCAAGTGCAGAAGCGGGGAATGCATAGACATGAGCAAAGTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCc tgccagaagagtgatagctttaaactttttatatcatgtgtattttatagttAATCAGTGCTTGGGCCCTGGAAAATTCAAGTGCAGGAGTGGTGAATGCATAGACATGAGCAAAGTATGTGATCAAGAACAAGACTGCAGAGACTGGAGTGATGAACCCCTGAAGGAATGCcgtgagtgagaggaatcaaacattgttgaattttttcaaagggttgaggaa Alignment from Spaln_aa2Genome TCAATCAGTGCCTGGGCCCTGGAAAGTTCAAGTGCAGAAGCGGGGAATGCATAGACATGAGCAAAGTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCC tgccagaagagtgatagctttaaactttttatatcatgtgtattttatagTTAATCAGTGCTTGGGCCCTGGAAAATTCAAGTGCAGGAGTGGTGAATGCATAGACATGAGCAAAGTATGTGATCAAGAACAAGACTGCAGAGACTGGAGTGATGAACCCCTGAAGGAATGCCgtgagtgagaggaatcaaacattgttgaattttttcaaagggttgaggaa Alignment from Spaln_nt2Genome TCAATCAGTGCCTGGGCCCTGGAAAGTTCAAGTGCAGAAGCGGGGAATGCATAGACATGAGCAAAGTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCC tgccagaagagtgatagctttaaactttttatatcatgtgtattttatagTTAATCAGTGCTTGGGCCCTGGAAAATTCAAGTGCAGGAGTGGTGAATGCATAGACATGAGCAAAGTATGTGATCAAGAACAAGACTGCAGAGACTGGAGTGATGAACCCCTGAAGGAATGCCgtgagtgagaggaatcaaacattgttgaattttttcaaagggttgaggaa Alignment from Pairagon TCAATCAGTGCCTGGGCCCTGGAAAGTTCAAGTGCAGAAGCGGGGAATGCATAGACATGAGCAAAGTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCC tgccagaagagtgatagctttaaactttttatatcatgtgtattttatagTTAATCAGTGCTTGGGCCCTGGAAAATTCAAGTGCAGGAGTGGTGAATGCATAGACATGAGCAAAGTATGTGATCAAGAACAAGACTGCAGAGACTGGAGTGATGAACCCCTGAAGGAATGCCgtgagtgagaggaatcaaacattgttgaattttttcaaagggttgaggaa Alignment from Exonerate_protein2genome TCAATCAGTGCCTGGGCCCTGGAAAGTTCAAGTGCAGAAGCGGGGAATGCATAGACATGAGCAAAGTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCC tgccagaagagtgatagctttaaactttttatatcatgtgtattttatagTTAATCAGTGCTTGGGCCCTGGAAAATTCAAGTGCAGGAGTGGTGAATGCATAGACATGAGCAAAGTATGTGATCAAGAACAAGACTGCAGAGACTGGAGTGATGAACCCCTGAAGGAATGCCgtgagtgagaggaatcaaacattgttgaattttttcaaagggttgaggaa Alignment from Exonerate_coding2genome TCAATCAGTGCCTGGGCCCTGGAAAGTTCAAGTGCAGAAGCGGGGAATGCATAGACATGAGCAAAGTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCC tgccagaagagtgatagctttaaactttttatatcatgtgtattttatagTTAATCAGTGCTTGGGCCCTGGAAAATTCAAGTGCAGGAGTGGTGAATGCATAGACATGAGCAAAGTATGTGATCAAGAACAAGACTGCAGAGACTGGAGTGATGAACCCCTGAAGGAATGCCgtgagtgagaggaatcaaacattgttgaattttttcaaagggttgaggaa Alignment from GeneWise TCAATCAGTGCCTGGGCCCTGGAAAGTTCAAGTGCAGAAGCGGGGAATGCATAGACATGAGCAAAGTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCC tgccagaagagtgatagctttaaactttttatatcatgtgtattttatagTTAATCAGTGCTTGGGCCCTGGAAAATTCAAGTGCAGGAGTGGTGAATGCATAGACATGAGCAAAGTATGTGATCAAGAACAAGACTGCAGAGACTGGAGTGATGAACCCCTGAAGGAATGCCgtgagtgagaggaatcaaacattgttgaattttttcaaagggttgaggaa #### Vldlr_ID5815_14 --> 0 - 1 Original Alignment GATCGCGTCTACTGGATAGATGGAGAAAATGAAGCAGTGTACGGTGCCAATAAATTCACTGGGTCAGAGCTGGCCACTCTAGTGAATAATCTCAATGATGCCCAAGACATCATTGTCTACCATGAACTCGTCCAGCCGTCAg cttaaagtagttgctcactgtcatagatacactgtcacacttcccttcagGATCGTGTCTACTGGATAGATGGAGAAAACGAAGGAGTGTATGGTGCCAACAAGTTCTCTGGGTCAGAGCTGGCCACTCTTGTGAATAATCTAAATGATGCCCAAGATATCATTGTCTACCATGAACTTGTCCAGCCATCAggtaggttgggagtaacccaactcaaagcatcacaccctctctaattacta Alignment from CESAR GATCGCGTCTACTGGATAGATGGAGAAAATGAAGCAGTGTACGGTGCCAATAAATTCACTGGGTCAGAGCTGGCCACTCTAGTGAATAATCTCAATGATGCCCAAGACATCATTGTCTACCATGAACTCGTCCAGCCGTCAg cttaaagtagttgctcactgtcatagatacactgtcacacttcccttcagGATCGTGTCTACTGGATAGATGGAGAAAACGAAGGAGTGTATGGTGCCAACAAGTTCTCTGGGTCAGAGCTGGCCACTCTTGTGAATAATCTAAATGATGCCCAAGATATCATTGTCTACCATGAACTTGTCCAGCCATCAggtaggttgggagtaacccaactcaaagcatcacaccctctctaattacta Alignment from Spaln_aa2Genome GATCGCGTCTACTGGATAGATGGAGAAAATGAAGCAGTGTACGGTGCCAATAAATTCACTGGGTCAGAGCTGGCCACTCTAGTGAATAATCTCAATGATGCCCAAGACATCATTGTCTACCATGAACTCGTCCAGCCGTCAG cttaaagtagttgctcactgtcatagatacactgtcacacttcccttcagGATCGTGTCTACTGGATAGATGGAGAAAACGAAGGAGTGTATGGTGCCAACAAGTTCTCTGGGTCAGAGCTGGCCACTCTTGTGAATAATCTAAATGATGCCCAAGATATCATTGTCTACCATGAACTTGTCCAGCCATCAGgtaggttgggagtaacccaactcaaagcatcacaccctctctaattacta Alignment from Spaln_nt2Genome GATCGCGTCTACTGGATAGATGGAGAAAATGAAGCAGTGTACGGTGCCAATAAATTCACTGGGTCAGAGCTGGCCACTCTAGTGAATAATCTCAATGATGCCCAAGACATCATTGTCTACCATGAACTCGTCCAGCCGTCAG cttaaagtagttgctcactgtcatagatacactgtcacacttcccttcagGATCGTGTCTACTGGATAGATGGAGAAAACGAAGGAGTGTATGGTGCCAACAAGTTCTCTGGGTCAGAGCTGGCCACTCTTGTGAATAATCTAAATGATGCCCAAGATATCATTGTCTACCATGAACTTGTCCAGCCATCAGgtaggttgggagtaacccaactcaaagcatcacaccctctctaattacta Alignment from Pairagon GATCGCGTCTACTGGATAGATGGAGAAAATGAAGCAGTGTACGGTGCCAATAAATTCACTGGGTCAGAGCTGGCCACTCTAGTGAATAATCTCAATGATGCCCAAGACATCATTGTCTACCATGAACTCGTCCAGCCGTCAG cttaaagtagttgctcactgtcatagatacactgtcacacttcccttcagGATCGTGTCTACTGGATAGATGGAGAAAACGAAGGAGTGTATGGTGCCAACAAGTTCTCTGGGTCAGAGCTGGCCACTCTTGTGAATAATCTAAATGATGCCCAAGATATCATTGTCTACCATGAACTTGTCCAGCCATCAGgtaggttgggagtaacccaactcaaagcatcacaccctctctaattacta Alignment from Exonerate_protein2genome GATCGCGTCTACTGGATAGATGGAGAAAATGAAGCAGTGTACGGTGCCAATAAATTCACTGGGTCAGAGCTGGCCACTCTAGTGAATAATCTCAATGATGCCCAAGACATCATTGTCTACCATGAACTCGTCCAGCCGTCAG cttaaagtagttgctcactgtcatagatacactgtcacacttcccttcagGATCGTGTCTACTGGATAGATGGAGAAAACGAAGGAGTGTATGGTGCCAACAAGTTCTCTGGGTCAGAGCTGGCCACTCTTGTGAATAATCTAAATGATGCCCAAGATATCATTGTCTACCATGAACTTGTCCAGCCATCAGgtaggttgggagtaacccaactcaaagcatcacaccctctctaattacta Alignment from Exonerate_coding2genome GATCGCGTCTACTGGATAGATGGAGAAAATGAAGCAGTGTACGGTGCCAATAAATTCACTGGGTCAGAGCTGGCCACTCTAGTGAATAATCTCAATGATGCCCAAGACATCATTGTCTACCATGAACTCGTCCAGCCGTCAG cttaaagtagttgctcactgtcatagatacactgtcacacttcccttcagGATCGTGTCTACTGGATAGATGGAGAAAACGAAGGAGTGTATGGTGCCAACAAGTTCTCTGGGTCAGAGCTGGCCACTCTTGTGAATAATCTAAATGATGCCCAAGATATCATTGTCTACCATGAACTTGTCCAGCCATCAGgtaggttgggagtaacccaactcaaagcatcacaccctctctaattacta Alignment from GeneWise GATCGCGTCTACTGGATAGATGGAGAAAATGAAGCAGTGTACGGTGCCAATAAATTCACTGGGTCAGAGCTGGCCACTCTAGTGAATAATCTCAATGATGCCCAAGACATCATTGTCTACCATGAACTCGTCCAGCCGTCAG cttaaagtagttgctcactgtcatagatacactgtcacacttcccttcagGATCGTGTCTACTGGATAGATGGAGAAAACGAAGGAGTGTATGGTGCCAACAAGTTCTCTGGGTCAGAGCTGGCCACTCTTGTGAATAATCTAAATGATGCCCAAGATATCATTGTCTACCATGAACTTGTCCAGCCATCAGgtaggttgggagtaacccaactcaaagcatcacaccctctctaattacta #### Vps13a_ID4052_71 --> 0 - 0 Original Alignment GAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGG cctacaaatttctaaacacaaaagaataaccctctatgttctgcccacagGAACGGGTGAAGTCTGTATTCCATGCTAAAGAATTTGGAAAAATTGTTAACTTCAAGACTCCAGAAGACGCTAGGgtgagtatacatagttattgatatgcagtgcatcagatctcactttgaat Alignment from CESAR GAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGG cctacaaatttctaaacacaaaagaataaccctctatgttctgcccacagGAACGGGTGAAGTCTGTATTCCATGCTAAAGAATTTGGAAAAATTGTTAACTTCAAGACTCCAGAAGACGCTAGGgtgagtatacatagttattgatatgcagtgcatcagatctcactttgaat Alignment from Spaln_aa2Genome GAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGG cctacaaatttctaaacacaaaagaataaccctctatgttctgcccacagGAACGGGTGAAGTCTGTATTCCATGCTAAAGAATTTGGAAAAATTGTTAACTTCAAGACTCCAGAAGACGCTAGGgtgagtatacatagttattgatatgcagtgcatcagatctcactttgaat Alignment from Spaln_nt2Genome GAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGG cctacaaatttctaaacacaaaagaataaccctctatgttctgcccacagGAACGGGTGAAGTCTGTATTCCATGCTAAAGAATTTGGAAAAATTGTTAACTTCAAGACTCCAGAAGACGCTAGGgtgagtatacatagttattgatatgcagtgcatcagatctcactttgaat Alignment from Pairagon GAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGG cctacaaatttctaaacacaaaagaataaccctctatgttctgcccacagGAACGGGTGAAGTCTGTATTCCATGCTAAAGAATTTGGAAAAATTGTTAACTTCAAGACTCCAGAAGACGCTAGGgtgagtatacatagttattgatatgcagtgcatcagatctcactttgaat Alignment from Exonerate_protein2genome GAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGG cctacaaatttctaaacacaaaagaataaccctctatgttctgcccacagGAACGGGTGAAGTCTGTATTCCATGCTAAAGAATTTGGAAAAATTGTTAACTTCAAGACTCCAGAAGACGCTAGGgtgagtatacatagttattgatatgcagtgcatcagatctcactttgaat Alignment from Exonerate_coding2genome cctacaaatttctaaacacaaaagaataaccctctatgttctgcccacaggaacgggtgaagtctgtattccatgctaaagaatttggaaaaattgttaacttcaagactccagaagacgctagggtgagtatacatagttattgatatgcagtgcatcagatctcactttgaat Alignment from GeneWise GAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGG cctacaaatttctaaacacaaaagaataaccctctatgttctgcccacagGAACGGGTGAAGTCTGTATTCCATGCTAAAGAATTTGGAAAAATTGTTAACTTCAAGACTCCAGAAGACGCTAGGgtgagtatacatagttattgatatgcagtgcatcagatctcactttgaat #### Vps13a_ID4056_67 --> 2 - 2 Original Alignment gtGCTCAAAAGGAAGGAGCAGCAGGTTTCTTCAAAGGTGTTGGAAAAGGTTTAGTTGGAGCAGTGACAAGGCCAACGGGTGGCATCATAGACATGGCCAGCAGTACCTTTCAGGGAATCAAAag atatcattctcatttgggcatagttgctctgtctgtccatctgtccacaggaCCACAAAACGAAGGAGCAGCAGGCTTGTTCAAAGGTGTTGGGAAAGGTTTT---GGGGCAGTGACAAGGCCAACAGGTGTCATCATAGACATGGCCAGCAGTTCCTTTCAAGGAGTCAAAaggtaagtcatctatatgatcagccaatgaataaagtcacagtccattattg Alignment from CESAR gtGCTCAAAAGGAAGGAGCAGCAGGTTTCTTCAAAGGTGTTGGAAAAGGTTTAGTTGGAGCAGTGACAAGGCCAACGGGTGGCATCATAGACATGGCCAGCAGTACCTTTCAGGGAATCAAAag atatcattctcatttgggcatagttgctctgtctgtccatctgtccacaggaCCACAAAACGAAGGAGCAGCAGGCTTGTTCAAAGGTGTTGGGAAAGGTTTT---GGGGCAGTGACAAGGCCAACAGGTGTCATCATAGACATGGCCAGCAGTTCCTTTCAAGGAGTCAAAaggtaagtcatctatatgatcagccaatgaataaagtcacagtccattattg Alignment from Spaln_aa2Genome GTGCTCAAAAGGAAGGAGCAGCAGGTTTCTTCAAAGGTGTTGGAAAAGGTTTAGTTGGAGCAGTGACAAGGCCAACGGGTGGCATCATAGACATGGCCAGCAGTACCTTTCAGGGAATCAAAAG atatcattctcatttgggcatagttgctctgtctgtccatctgtccacagGACCACAAAACGAAGGAGCAGCAGGCTTGTTCAAAGGTGTTGGGAAAGGTTTT---GGGGCAGTGACAAGGCCAACAGGTGTCATCATAGACATGGCCAGCAGTTCCTTTCAAGGAGTCAAAAGgtaagtcatctatatgatcagccaatgaataaagtcacagtccattattg Alignment from Spaln_nt2Genome GTGCTCAAAAGGAAGGAGCAGCAGGTTTCTTCAAAGGTGTTGGAAAAGGTTTAGTTGGAGCAGTGACAAGGCCAACGGGTGGCATCATAGACATGGCCAGCAGTACCTTTCAGGGAATCAAAAG atatcattctcatttgggcatagttgctctgtctgtccatctgtccacagGACCACAAAACGAAGGAGCAGCAGGCTTGTTCAAAGGTGTTGGGAAAGGTT---TTGGGGCAGTGACAAGGCCAACAGGTGTCATCATAGACATGGCCAGCAGTTCCTTTCAAGGAGTCAAAAGgtaagtcatctatatgatcagccaatgaataaagtcacagtccattattg Alignment from Pairagon GTGCTCAAAAGGAAGGAGCAGCAGGTTTCTTCAAAGGTGTTGGAAAAGGTTTAGTTGGAGCAGTGACAAGGCCAACGGGTGGCATCATAGACATGGCCAGCAGTACCTTTCAGGGAATCAAAAG atatcattctcatttgggcatagttgctctgtctgtccatctgtccacagGACCACAAAACGAAGGAGCAGCAGGCTTGTTCAAAGGTGTTGGGAAAGGTT---TTGGGGCAGTGACAAGGCCAACAGGTGTCATCATAGACATGGCCAGCAGTTCCTTTCAAGGAGTCAAAAGgtaagtcatctatatgatcagccaatgaataaagtcacagtccattattg Alignment from Exonerate_protein2genome GTGCTCAAAAGGAAGGAGCAGCAGGTTTCTTCAAAGGTGTTGGAAAAGGTTTAGTTGGAGCAGTGACAAGGCCAACGGGTGGCATCATAGACATGGCCAGCAGTACCTTTCAGGGAATCAAAAG atatcattctcatttgggcatagttgctctgtctgtccatctgtccacagGACCACAAAACGAAGGAGCAGCAGGCTTGTTCAAAGGTGTTGGGAAAGGTTTT---GGGGCAGTGACAAGGCCAACAGGTGTCATCATAGACATGGCCAGCAGTTCCTTTCAAGGAGTCAAAAGgtaagtcatctatatgatcagccaatgaataaagtcacagtccattattg Alignment from Exonerate_coding2genome GTGCTCAAAAGGAAGGAGCAGCAGGTTTCTTCAAAGGTGTTGGAAAAGGTTTAGTTGGAGCAGTGACAAGGCCAACGGGTGGCATCATAGACATGGCCAGCAGTACCTTTCAGGGAATCAAAAG atatcattctcatttgggcatagttgctctgtctgtccatctgtccacagGACCACAAAACGAAGGAGCAGCAGGCTTGTTCAAAGGTGTTGGGAAAGGTTTT---GGGGCAGTGACAAGGCCAACAGGTGTCATCATAGACATGGCCAGCAGTTCCTTTCAAGGAGTCAAAAGgtaagtcatctatatgatcagccaatgaataaagtcacagtccattattg Alignment from GeneWise -------------------------------------------------GGTGCTCAAAAGGAAGGAGCAGCAGGTTTCTTCAAAGGTGTTGGAAAAGGTTTAGTTGGAGCAGTGACAAGGCCAACGGGTGGCATCATAGACATGGCCAGCAGTACCTTTCAGGGAATCAAAAG ATATCATTCTCATTTGGGCATAGTTGCTCTGTCTGTCCATCTGTCCACAGGACCACAAAACGAAGGAGCAGCAGGCTTGTTCAAAGGTGTTGGGAAAGGTTTT---GGGGCAGTGACAAGGCCAACAGGTGTCATCATAGACATGGCCAGCAGTTCCTTTCAAGGAGTCAAAAGgtaagtcatctatatgatcagccaatgaataaagtcacagtccattattg #### Vps13a_ID4062_61 --> 0 - 2 Original Alignment TTGCACTTGAGTGTTTCCCTGAGCTCTGGTAGAGATGAAGCGAAAGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCGTTAAATCTTTTGCTGAAGAGTATTGGTGCCACCCTCACAGATGTACAAGATGTAGTTTTTaa ttgaacagagtggggaaaatactgtaatatgcatttgttgttctgtgtagTTACACTTGAGTGTTTCCCTGAGCTCTGGTAGGGATGAAGCAAAAGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCATTAAATCTTCTGCAAAAGAGTATTGGTGCCACCCTCACAGATGTCCAAGATGTAGTTTTTaagtgagttcaatacttatatctatagactaagaaaccactcaacttcatac Alignment from CESAR TTGCACTTGAGTGTTTCCCTGAGCTCTGGTAGAGATGAAGCGAAAGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCGTTAAATCTTTTGCTGAAGAGTATTGGTGCCACCCTCACAGATGTACAAGATGTAGTTTTTaa ttgaacagagtggggaaaatactgtaatatgcatttgttgttctgtgtagTTACACTTGAGTGTTTCCCTGAGCTCTGGTAGGGATGAAGCAAAAGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCATTAAATCTTCTGCAAAAGAGTATTGGTGCCACCCTCACAGATGTCCAAGATGTAGTTTTTaagtgagttcaatacttatatctatagactaagaaaccactcaacttcatac Alignment from Spaln_aa2Genome TTGCACTTGAGTGTTTCCCTGAGCTCTGGTAGAGATGAAGCGAAAGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCGTTAAATCTTTTGCTGAAGAGTATTGGTGCCACCCTCACAGATGTACAAGATGTAGTTTTTAA ttgaacagagtggggaaaatactgtaatatgcatttgttgttctgtgtagTTACACTTGAGTGTTTCCCTGAGCTCTGGTAGGGATGAAGCAAAAGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCATTAAATCTTCTGCAAAAGAGTATTGGTGCCACCCTCACAGATGTCCAAGATGTAGTTTTTAAgtgagttcaatacttatatctatagactaagaaaccactcaacttcatac Alignment from Spaln_nt2Genome TTGCACTTGAGTGTTTCCCTGAGCTCTGGTAGAGATGAAGCGAAAGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCGTTAAATCTTTTGCTGAAGAGTATTGGTGCCACCCTCACAGATGTACAAGATGTAGTTTTTAA ttgaacagagtggggaaaatactgtaatatgcatttgttgttctgtgtagTTACACTTGAGTGTTTCCCTGAGCTCTGGTAGGGATGAAGCAAAAGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCATTAAATCTTCTGCAAAAGAGTATTGGTGCCACCCTCACAGATGTCCAAGATGTAGTTTTTAAgtgagttcaatacttatatctatagactaagaaaccactcaacttcatac Alignment from Pairagon TTGCACTTGAGTGTTTCCCTGAGCTCTGGTAGAGATGAAGCGAAAGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCGTTAAATCTTTTGCTGAAGAGTATTGGTGCCACCCTCACAGATGTACAAGATGTAGTTTTTAA ttgaacagagtggggaaaatactgtaatatgcatttgttgttctgtgtagTTACACTTGAGTGTTTCCCTGAGCTCTGGTAGGGATGAAGCAAAAGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCATTAAATCTTCTGCAAAAGAGTATTGGTGCCACCCTCACAGATGTCCAAGATGTAGTTTTTAAgtgagttcaatacttatatctatagactaagaaaccactcaacttcatac Alignment from Exonerate_protein2genome TTGCACTTGAGTGTTTCCCTGAGCTCTGGTAGAGATGAAGCGAAAGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCGTTAAATCTTTTGCTGAAGAGTATTGGTGCCACCCTCACAGATGTACAAGATGTAGTTTTTAA ttgaacagagtggggaaaatactgtaatatgcatttgttgttctgtgtagTTACACTTGAGTGTTTCCCTGAGCTCTGGTAGGGATGAAGCAAAAGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCATTAAATCTTCTGCAAAAGAGTATTGGTGCCACCCTCACAGATGTCCAAGATGTAGTTTTTAAgtgagttcaatacttatatctatagactaagaaaccactcaacttcatac Alignment from Exonerate_coding2genome ttgaacagagtggggaaaatactgtaatatgcatttgttgttctgtgtagttacacttgagtgtttccctgagctctggtagggatgaagcaaaagactcagaacaacatggaggactaattcctgttcattcattaaatcttctgcaaaagagtattggtgccaccctcacagatgtccaagatgtagtttttaagtgagttcaatacttatatctatagactaagaaaccactcaacttcatac Alignment from GeneWise TTGCACTTGAGTGTTTCCCTGAGCTCTGGTAGAGATGAAGCGAAAGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCGTTAAATCTTTTGCTGAAGAGTATTGGTGCCACCCTCACAGATGTACAAGATGTAGTTTTTAA ttgaacagagtggggaaaatactgtaatatgcatttgttgttctgtgtagTTACACTTGAGTGTTTCCCTGAGCTCTGGTAGGGATGAAGCAAAAGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCATTAAATCTTCTGCAAAAGAGTATTGGTGCCACCCTCACAGATGTCCAAGATGTAGTTTTTAAgtgagttcaatacttatatctatagactaagaaaccactcaacttcatac #### Vps13a_ID4072_51 --> 0 - 0 Original Alignment AGTATCCCCTTTTGGCCTGAGAATGCCTCCAATATTCTTCTTATTCAAGTTGAGAGGAGTGAAGATCCTCCAAAAAGGATATATTTTAACAAGCAAGATAATTGTATTTTATTGAGACTGAATAATGAG catgcaatccataaaacatgtgaaaaaaccctgcttcgcacccgttccagAGCATCCCATTCTGGCCAGAGAATGCCTTGAATATCCTTCTT---------GAGAGGAGTGAGGACCCACCAAAAAGAATCTATTTCAATAAGCAAGATAATTGCACTTTACTGAGGCTGAATAATGATgtaagcgtattaacaattattaccttataatattacagataaattgatcc Alignment from CESAR AGTATCCCCTTTTGGCCTGAGAATGCCTCCAATATTCTTCTTATTCAAGTTGAGAGGAGTGAAGATCCTCCAAAAAGGATATATTTTAACAAGCAAGATAATTGTATTTTATTGAGACTGAATAATGAG catgcaatccataaaacatgtgaaaaaaccctgcttcgcacccgttccagAGCATCCCATTCTGGCCAGAGAATGCCTTGAATATCCTTCTT---------GAGAGGAGTGAGGACCCACCAAAAAGAATCTATTTCAATAAGCAAGATAATTGCACTTTACTGAGGCTGAATAATGATgtaagcgtattaacaattattaccttataatattacagataaattgatcc Alignment from Spaln_aa2Genome AGTATCCCCTTTTGGCCTGAGAATGCCTCCAATATTCTTCTTATTCAAGTTGAGAGGAGTGAAGATCCTCCAAAAAGGATATATTTTAACAAGCAAGATAATTGTATTTTATTGAGACTGAATAATGAG catgcaatccataaaacatgtgaaaaaaccctgcttcgcacccgttccagAGCATCCCATTCTGGCCAGAGAATGCCTTGAATATCCTTCTT---------GAGAGGAGTGAGGACCCACCAAAAAGAATCTATTTCAATAAGCAAGATAATTGCACTTTACTGAGGCTGAATAATGATgtaagcgtattaacaattattaccttataatattacagataaattgatcc Alignment from Spaln_nt2Genome AGTATCCCCTTTTGGCCTGAGAATGCCTCCAATATTCTTCTTATTCAAGTTGAGAGGAGTGAAGATCCTCCAAAAAGGATATATTTTAACAAGCAAGATAATTGTATTTTATTGAGACTGAATAATGAG catgcaatccataaaacatgtgaaaaaaccctgcttcgcacccgttccagAGCATCCCATTCTGGCCAGAGAATGCCTTGAATATCCTTC---------TTGAGAGGAGTGAGGACCCACCAAAAAGAATCTATTTCAATAAGCAAGATAATTGCACTTTACTGAGGCTGAATAATGATgtaagcgtattaacaattattaccttataatattacagataaattgatcc Alignment from Pairagon AGTATCCCCTTTTGGCCTGAGAATGCCTCCAATATTCTTCTTATTCAAGTTGAGAGGAGTGAAGATCCTCCAAAAAGGATATATTTTAACAAGCAAGATAATTGTATTTTATTGAGACTGAATAATGAG catgcaatccataaaacatgtgaaaaaaccctgcttcgcacccgttccagAGCATCCCATTCTGGCCAGAGAATGCCTTGAATATCCTTC---------TTGAGAGGAGTGAGGACCCACCAAAAAGAATCTATTTCAATAAGCAAGATAATTGCACTTTACTGAGGCTGAATAATGATgtaagcgtattaacaattattaccttataatattacagataaattgatcc Alignment from Exonerate_protein2genome AGTATCCCCTTTTGGCCTGAGAATGCCTCCAATATTCTTCTTATTCAAGTTGAGAGGAGTGAAGATCCTCCAAAAAGGATATATTTTAACAAGCAAGATAATTGTATTTTATTGAGACTGAATAATGAG catgcaatccataaaacatgtgaaaaaaccctgcttcgcacccgttccagAGCATCCCATTCTGGCCAGAGAATGCCTTGAATATCCTTCTT---------GAGAGGAGTGAGGACCCACCAAAAAGAATCTATTTCAATAAGCAAGATAATTGCACTTTACTGAGGCTGAATAATGATgtaagcgtattaacaattattaccttataatattacagataaattgatcc Alignment from Exonerate_coding2genome AGTATCCCCTTTTGGCCTGAGAATGCCTCCAATATTCTTCTTATTCAAGTTGAGAGGAGTGAAGATCCTCCAAAAAGGATATATTTTAACAAGCAAGATAATTGTATTTTATTGAGACTGAATAATGAG catgcaatccataaaacatgtgaaaaaaccctgcttcgcacccgttccagAGCATCCCATTCTGGCCAGAGAATGCCTTGAATATCCTTCTT---------GAGAGGAGTGAGGACCCACCAAAAAGAATCTATTTCAATAAGCAAGATAATTGCACTTTACTGAGGCTGAATAATGATgtaagcgtattaacaattattaccttataatattacagataaattgatcc Alignment from GeneWise AGTATCCCCTTTTGGCCTGAGAATGCCTCCAATATTCTTCTTATTCAAGTTGAGAGGAGTGAAGATCCTCCAAAAAGGATATATTTTAACAAGCAAGATAATTGTATTTTATTGAGACTGAATAATGAG catgcaatccataaaacatgtgaaaaaaccctgcttcgcacccgttccagAGCATCCCATTCTGGCCAGAGAATGCCTTGAATATCCTTCTT---------GAGAGGAGTGAGGACCCACCAAAAAGAATCTATTTCAATAAGCAAGATAATTGCACTTTACTGAGGCTGAATAATGATgtaagcgtattaacaattattaccttataatattacagataaattgatcc #### Vps13a_ID4078_45 --> 2 - 0 Original Alignment cgCCTGCTAACCACTCTGTCGCTGACAAGATCCCTTTAACAAAAGTGGGACGCCGTCTGTACACTGTAAGACACAGAGAATCTGGGGTCGAAAGATCTATCATTTGTCAAATTGACACAGTTGAAGGAAGTAAGAAGGTAACAATCCGCTCACCAGTGCAG ctcttggtaccagattaacacagcccatttttttttttttttttgcatagcaCCTGCTAACCACTCTGTTGCTGATGAGATTCCTTTGGCAAAGGTGGGACACCGTCTGTACACTGTGAGACACCGCGAATCTGGGGCTAAAAGATCTATCATTTGCCAAATTGATACCGTGGAAGGAAGTAAGAAAGTTACGATCCACTCACCAGTACAGgtaagaagaatgaaccccccaagggcatctgtccacagggggaggggggt Alignment from CESAR cgCCTGCTAACCACTCTGTCGCTGACAAGATCCCTTTAACAAAAGTGGGACGCCGTCTGTACACTGTAAGACACAGAGAATCTGGGGTCGAAAGATCTATCATTTGTCAAATTGACACAGTTGAAGGAAGTAAGAAGGTAACAATCCGCTCACCAGTGCAG ctcttggtaccagattaacacagcccatttttttttttttttttgcatagcaCCTGCTAACCACTCTGTTGCTGATGAGATTCCTTTGGCAAAGGTGGGACACCGTCTGTACACTGTGAGACACCGCGAATCTGGGGCTAAAAGATCTATCATTTGCCAAATTGATACCGTGGAAGGAAGTAAGAAAGTTACGATCCACTCACCAGTACAGgtaagaagaatgaaccccccaagggcatctgtccacagggggaggggggt Alignment from Spaln_aa2Genome CGCCTGCTAACCACTCTGTCGCTGACAAGATCCCTTTAACAAAAGTGGGACGCCGTCTGTACACTGTAAGACACAGAGAATCTGGGGTCGAAAGATCTATCATTTGTCAAATTGACACAGTTGAAGGAAGTAAGAAGGTAACAATCCGCTCACCAGTGCAG ctcttggtaccagattaacacagcccatttttttttttttttttgcatagCACCTGCTAACCACTCTGTTGCTGATGAGATTCCTTTGGCAAAGGTGGGACACCGTCTGTACACTGTGAGACACCGCGAATCTGGGGCTAAAAGATCTATCATTTGCCAAATTGATACCGTGGAAGGAAGTAAGAAAGTTACGATCCACTCACCAGTACAGgtaagaagaatgaaccccccaagggcatctgtccacagggggaggggggt Alignment from Spaln_nt2Genome CGCCTGCTAACCACTCTGTCGCTGACAAGATCCCTTTAACAAAAGTGGGACGCCGTCTGTACACTGTAAGACACAGAGAATCTGGGGTCGAAAGATCTATCATTTGTCAAATTGACACAGTTGAAGGAAGTAAGAAGGTAACAATCCGCTCACCAGTGCAG ctcttggtaccagattaacacagcccatttttttttttttttttgcatagCACCTGCTAACCACTCTGTTGCTGATGAGATTCCTTTGGCAAAGGTGGGACACCGTCTGTACACTGTGAGACACCGCGAATCTGGGGCTAAAAGATCTATCATTTGCCAAATTGATACCGTGGAAGGAAGTAAGAAAGTTACGATCCACTCACCAGTACAGgtaagaagaatgaaccccccaagggcatctgtccacagggggaggggggt Alignment from Pairagon CGCCTGCTAACCACTCTGTCGCTGACAAGATCCCTTTAACAAAAGTGGGACGCCGTCTGTACACTGTAAGACACAGAGAATCTGGGGTCGAAAGATCTATCATTTGTCAAATTGACACAGTTGAAGGAAGTAAGAAGGTAACAATCCGCTCACCAGTGCAG ctcttggtaccagattaacacagcccatttttttttttttttttgcatagCACCTGCTAACCACTCTGTTGCTGATGAGATTCCTTTGGCAAAGGTGGGACACCGTCTGTACACTGTGAGACACCGCGAATCTGGGGCTAAAAGATCTATCATTTGCCAAATTGATACCGTGGAAGGAAGTAAGAAAGTTACGATCCACTCACCAGTACAGgtaagaagaatgaaccccccaagggcatctgtccacagggggaggggggt Alignment from Exonerate_protein2genome CGCCTGCTAACCACTCTGTCGCTGACAAGATCCCTTTAACAAAAGTGGGACGCCGTCTGTACACTGTAAGACACAGAGAATCTGGGGTCGAAAGATCTATCATTTGTCAAATTGACACAGTTGAAGGAAGTAAGAAGGTAACAATCCGCTCACCAGTGCAG ctcttggtaccagattaacacagcccatttttttttttttttttgcatagCACCTGCTAACCACTCTGTTGCTGATGAGATTCCTTTGGCAAAGGTGGGACACCGTCTGTACACTGTGAGACACCGCGAATCTGGGGCTAAAAGATCTATCATTTGCCAAATTGATACCGTGGAAGGAAGTAAGAAAGTTACGATCCACTCACCAGTACAGgtaagaagaatgaaccccccaagggcatctgtccacagggggaggggggt Alignment from Exonerate_coding2genome CGCCTGCTAACCACTCTGTCGCTGACAAGATCCCTTTAACAAAAGTGGGACGCCGTCTGTACACTGTAAGACACAGAGAATCTGGGGTCGAAAGATCTATCATTTGTCAAATTGACACAGTTGAAGGAAGTAAGAAGGTAACAATCCGCTCACCAGTGCAG ctcttggtaccagattaacacagcccatttttttttttttttttgcatagCACCTGCTAACCACTCTGTTGCTGATGAGATTCCTTTGGCAAAGGTGGGACACCGTCTGTACACTGTGAGACACCGCGAATCTGGGGCTAAAAGATCTATCATTTGCCAAATTGATACCGTGGAAGGAAGTAAGAAAGTTACGATCCACTCACCAGTACAGgtaagaagaatgaaccccccaagggcatctgtccacagggggaggggggt Alignment from GeneWise CGCCTGCTAACCACTCTGTCGCTGACAAGATCCCTTTAACAAAAGTGGGACGCCGTCTGTACACTGTAAGACACAGAGAATCTGGGGTCGAAAGATCTATCATTTGTCAAATTGACACAGTTGAAGGAAGTAAGAAGGTAACAATCCGCTCACCAGTGCAG ctcttggtaccagattaacacagcccatttttttttttttttttgcatagCACCTGCTAACCACTCTGTTGCTGATGAGATTCCTTTGGCAAAGGTGGGACACCGTCTGTACACTGTGAGACACCGCGAATCTGGGGCTAAAAGATCTATCATTTGCCAAATTGATACCGTGGAAGGAAGTAAGAAAGTTACGATCCACTCACCAGTACAGgtaagaagaatgaaccccccaagggcatctgtccacagggggaggggggt #### Vps13a_ID4088_35 --> 0 - 1 Original Alignment TTCATTCTTAGTCAGGAAGACTTAACAACCGTCTTTCAAACATTGCATGGCAATATATGGTATGGACAAGATCTGAGTGCTCCATCTTCTGCAAATAAGGACCCAGAGACCATGACCAGTGGGGTCACCAGTCCTCCTGACCATTCGCCAg gataggggtcatctcattctctccatgactatttattcttaatatttaagTTTATTCTCAGCCAGGAAGACCTAACAACTATTCTTCAAACCTTACATGGCAATATCTGGTATGGACAAGACCTGTGTGCCCCATCATCTGCAAAGACAGACCCACAGACTATGACCAGTGGAGTGACCAGTCCCCCGGACCATTCTCCAggtaagagataggcttgattcttggtcacatgcatcatcaagctctgtgtt Alignment from CESAR TTCATTCTTAGTCAGGAAGACTTAACAACCGTCTTTCAAACATTGCATGGCAATATATGGTATGGACAAGATCTGAGTGCTCCATCTTCTGCAAATAAGGACCCAGAGACCATGACCAGTGGGGTCACCAGTCCTCCTGACCATTCGCCAg gataggggtcatctcattctctccatgactatttattcttaatatttaagTTTATTCTCAGCCAGGAAGACCTAACAACTATTCTTCAAACCTTACATGGCAATATCTGGTATGGACAAGACCTGTGTGCCCCATCATCTGCAAAGACAGACCCACAGACTATGACCAGTGGAGTGACCAGTCCCCCGGACCATTCTCCAggtaagagataggcttgattcttggtcacatgcatcatcaagctctgtgtt Alignment from Spaln_aa2Genome TTCATTCTTAGTCAGGAAGACTTAACAACCGTCTTTCAAACATTGCATGGCAATATATGGTATGGACAAGATCTGAGTGCTCCATCTTCTGCAAATAAGGACCCAGAGACCATGACCAGTGGGGTCACCAGTCCTCCTGACCATTCGCCAG gataggggtcatctcattctctccatgactatttattcttaatatttaagTTTATTCTCAGCCAGGAAGACCTAACAACTATTCTTCAAACCTTACATGGCAATATCTGGTATGGACAAGACCTGTGTGCCCCATCATCTGCAAAGACAGACCCACAGACTATGACCAGTGGAGTGACCAGTCCCCCGGACCATTCTCCAGgtaagagataggcttgattcttggtcacatgcatcatcaagctctgtgtt Alignment from Spaln_nt2Genome TTCATTCTTAGTCAGGAAGACTTAACAACCGTCTTTCAAACATTGCATGGCAATATATGGTATGGACAAGATCTGAGTGCTCCATCTTCTGCAAATAAGGACCCAGAGACCATGACCAGTGGGGTCACCAGTCCTCCTGACCATTCGCCAG gataggggtcatctcattctctccatgactatttattcttaatatttaagTTTATTCTCAGCCAGGAAGACCTAACAACTATTCTTCAAACCTTACATGGCAATATCTGGTATGGACAAGACCTGTGTGCCCCATCATCTGCAAAGACAGACCCACAGACTATGACCAGTGGAGTGACCAGTCCCCCGGACCATTCTCCAGgtaagagataggcttgattcttggtcacatgcatcatcaagctctgtgtt Alignment from Pairagon TTCATTCTTAGTCAGGAAGACTTAACAACCGTCTTTCAAACATTGCATGGCAATATATGGTATGGACAAGATCTGAGTGCTCCATCTTCTGCAAATAAGGACCCAGAGACCATGACCAGTGGGGTCACCAGTCCTCCTGACCATTCGCCAG gataggggtcatctcattctctccatgactatttattcttaatatttaagTTTATTCTCAGCCAGGAAGACCTAACAACTATTCTTCAAACCTTACATGGCAATATCTGGTATGGACAAGACCTGTGTGCCCCATCATCTGCAAAGACAGACCCACAGACTATGACCAGTGGAGTGACCAGTCCCCCGGACCATTCTCCAGgtaagagataggcttgattcttggtcacatgcatcatcaagctctgtgtt Alignment from Exonerate_protein2genome TTCATTCTTAGTCAGGAAGACTTAACAACCGTCTTTCAAACATTGCATGGCAATATATGGTATGGACAAGATCTGAGTGCTCCATCTTCTGCAAATAAGGACCCAGAGACCATGACCAGTGGGGTCACCAGTCCTCCTGACCATTCGCCAG gataggggtcatctcattctctccatgactatttattcttaatatttaagTTTATTCTCAGCCAGGAAGACCTAACAACTATTCTTCAAACCTTACATGGCAATATCTGGTATGGACAAGACCTGTGTGCCCCATCATCTGCAAAGACAGACCCACAGACTATGACCAGTGGAGTGACCAGTCCCCCGGACCATTCTCCAGgtaagagataggcttgattcttggtcacatgcatcatcaagctctgtgtt Alignment from Exonerate_coding2genome TTCATTCTTAGTCAGGAAGACTTAACAACCGTCTTTCAAACATTGCATGGCAATATATGGTATGGACAAGATCTGAGTGCTCCATCTTCTGCAAATAAGGACCCAGAGACCATGACCAGTGGGGTCACCAGTCCTCCTGACCATTCGCCAG gataggggtcatctcattctctccatgactatttattcttaatatttaagTTTATTCTCAGCCAGGAAGACCTAACAACTATTCTTCAAACCTTACATGGCAATATCTGGTATGGACAAGACCTGTGTGCCCCATCATCTGCAAAGACAGACCCACAGACTATGACCAGTGGAGTGACCAGTCCCCCGGACCATTCTCCAGgtaagagataggcttgattcttggtcacatgcatcatcaagctctgtgtt Alignment from GeneWise TTCATTCTTAGTCAGGAAGACTTAACAACCGTCTTTCAAACATTGCATGGCAATATATGGTATGGACAAGATCTGAGTGCTCCATCTTCTGCAAATAAGGACCCAGAGACCATGACCAGTGGGGTCACCAGTCCTCCTGACCATTCGCCAG gataggggtcatctcattctctccatgactatttattcttaatatttaagTTTATTCTCAGCCAGGAAGACCTAACAACTATTCTTCAAACCTTACATGGCAATATCTGGTATGGACAAGACCTGTGTGCCCCATCATCTGCAAAGACAGACCCACAGACTATGACCAGTGGAGTGACCAGTCCCCCGGACCATTCTCCAGgtaagagataggcttgattcttggtcacatgcatcatcaagctctgtgtt #### Vps13a_ID4091_32 --> 0 - 0 Original Alignment GCTCTTTATATCACTGGAAAAGAAGTTTTCAGCTTCAAAATGATTTCTTACATGGATGCAACTGCTGGCTATGCATACACAGATATGAGTGTGGTTGACATTCGGGTTCATTTAACTGTTGGTTGCATTGAAGTAGTGTTCATCACAAAATTCCTGTATTCTATATTG cattaatctgagtaacagagcatcatacacttacatatgtgtatccacagGCTCTTTACATTACTGGGAAAGAGATTTTCAGCTTTAAAATGATATCTTACATGGAAGCAACTGCCGGCTATGCGTATACAGACATGAGTGTAGTTGATATTCGCATTTATCTAGCCGTTGGGTGCATTGAAGTGGTGTTCATCACAAGGCTTCTGTATTCTATATTAgtgagcctcatgaaagaagctttttcagaaagatgtactataattctaaa Alignment from CESAR GCTCTTTATATCACTGGAAAAGAAGTTTTCAGCTTCAAAATGATTTCTTACATGGATGCAACTGCTGGCTATGCATACACAGATATGAGTGTGGTTGACATTCGGGTTCATTTAACTGTTGGTTGCATTGAAGTAGTGTTCATCACAAAATTCCTGTATTCTATATTG cattaatctgagtaacagagcatcatacacttacatatgtgtatccacagGCTCTTTACATTACTGGGAAAGAGATTTTCAGCTTTAAAATGATATCTTACATGGAAGCAACTGCCGGCTATGCGTATACAGACATGAGTGTAGTTGATATTCGCATTTATCTAGCCGTTGGGTGCATTGAAGTGGTGTTCATCACAAGGCTTCTGTATTCTATATTAgtgagcctcatgaaagaagctttttcagaaagatgtactataattctaaa Alignment from Spaln_aa2Genome GCTCTTTATATCACTGGAAAAGAAGTTTTCAGCTTCAAAATGATTTCTTACATGGATGCAACTGCTGGCTATGCATACACAGATATGAGTGTGGTTGACATTCGGGTTCATTTAACTGTTGGTTGCATTGAAGTAGTGTTCATCACAAAATTCCTGTATTCTATATTG cattaatctgagtaacagagcatcatacacttacatatgtgtatccacagGCTCTTTACATTACTGGGAAAGAGATTTTCAGCTTTAAAATGATATCTTACATGGAAGCAACTGCCGGCTATGCGTATACAGACATGAGTGTAGTTGATATTCGCATTTATCTAGCCGTTGGGTGCATTGAAGTGGTGTTCATCACAAGGCTTCTGTATTCTATATTAgtgagcctcatgaaagaagctttttcagaaagatgtactataattctaaa Alignment from Spaln_nt2Genome GCTCTTTATATCACTGGAAAAGAAGTTTTCAGCTTCAAAATGATTTCTTACATGGATGCAACTGCTGGCTATGCATACACAGATATGAGTGTGGTTGACATTCGGGTTCATTTAACTGTTGGTTGCATTGAAGTAGTGTTCATCACAAAATTCCTGTATTCTATATTG cattaatctgagtaacagagcatcatacacttacatatgtgtatccacagGCTCTTTACATTACTGGGAAAGAGATTTTCAGCTTTAAAATGATATCTTACATGGAAGCAACTGCCGGCTATGCGTATACAGACATGAGTGTAGTTGATATTCGCATTTATCTAGCCGTTGGGTGCATTGAAGTGGTGTTCATCACAAGGCTTCTGTATTCTATATTAgtgagcctcatgaaagaagctttttcagaaagatgtactataattctaaa Alignment from Pairagon GCTCTTTATATCACTGGAAAAGAAGTTTTCAGCTTCAAAATGATTTCTTACATGGATGCAACTGCTGGCTATGCATACACAGATATGAGTGTGGTTGACATTCGGGTTCATTTAACTGTTGGTTGCATTGAAGTAGTGTTCATCACAAAATTCCTGTATTCTATATTG cattaatctgagtaacagagcatcatacacttacatatgtgtatccacagGCTCTTTACATTACTGGGAAAGAGATTTTCAGCTTTAAAATGATATCTTACATGGAAGCAACTGCCGGCTATGCGTATACAGACATGAGTGTAGTTGATATTCGCATTTATCTAGCCGTTGGGTGCATTGAAGTGGTGTTCATCACAAGGCTTCTGTATTCTATATTAgtgagcctcatgaaagaagctttttcagaaagatgtactataattctaaa Alignment from Exonerate_protein2genome GCTCTTTATATCACTGGAAAAGAAGTTTTCAGCTTCAAAATGATTTCTTACATGGATGCAACTGCTGGCTATGCATACACAGATATGAGTGTGGTTGACATTCGGGTTCATTTAACTGTTGGTTGCATTGAAGTAGTGTTCATCACAAAATTCCTGTATTCTATATTG cattaatctgagtaacagagcatcatacacttacatatgtgtatccacagGCTCTTTACATTACTGGGAAAGAGATTTTCAGCTTTAAAATGATATCTTACATGGAAGCAACTGCCGGCTATGCGTATACAGACATGAGTGTAGTTGATATTCGCATTTATCTAGCCGTTGGGTGCATTGAAGTGGTGTTCATCACAAGGCTTCTGTATTCTATATTAgtgagcctcatgaaagaagctttttcagaaagatgtactataattctaaa Alignment from Exonerate_coding2genome GCTCTTTATATCACTGGAAAAGAAGTTTTCAGCTTCAAAATGATTTCTTACATGGATGCAACTGCTGGCTATGCATACACAGATATGAGTGTGGTTGACATTCGGGTTCATTTAACTGTTGGTTGCATTGAAGTAGTGTTCATCACAAAATTCCTGTATTCTATATTG cattaatctgagtaacagagcatcatacacttacatatgtgtatccacagGCTCTTTACATTACTGGGAAAGAGATTTTCAGCTTTAAAATGATATCTTACATGGAAGCAACTGCCGGCTATGCGTATACAGACATGAGTGTAGTTGATATTCGCATTTATCTAGCCGTTGGGTGCATTGAAGTGGTGTTCATCACAAGGCTTCTGTATTCTATATTAgtgagcctcatgaaagaagctttttcagaaagatgtactataattctaaa Alignment from GeneWise GCTCTTTATATCACTGGAAAAGAAGTTTTCAGCTTCAAAATGATTTCTTACATGGATGCAACTGCTGGCTATGCATACACAGATATGAGTGTGGTTGACATTCGGGTTCATTTAACTGTTGGTTGCATTGAAGTAGTGTTCATCACAAAATTCCTGTATTCTATATTG cattaatctgagtaacagagcatcatacacttacatatgtgtatccacagGCTCTTTACATTACTGGGAAAGAGATTTTCAGCTTTAAAATGATATCTTACATGGAAGCAACTGCCGGCTATGCGTATACAGACATGAGTGTAGTTGATATTCGCATTTATCTAGCCGTTGGGTGCATTGAAGTGGTGTTCATCACAAGGCTTCTGTATTCTATATTAgtgagcctcatgaaagaagctttttcagaaagatgtactataattctaaa #### Vps13a_ID4093_30 --> 2 - 1 Original Alignment ctTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAg gtcatctgttagtaaatctcctgataccctcgcatttatgcttattttagctTTAAAGCTACCTATAAATGAAGACATTATTACATTGCAGCTCGTGGCAGAACTATCATGTTTAAAAATTCTCATCCAGGATCAGAAACAGAACGTATCAGAAATCAAAATTGAAggtaaatatatctatttcctgttaggattgactaaattcataaggcagcat Alignment from CESAR ctTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAg gtcatctgttagtaaatctcctgataccctcgcatttatgcttattttagctTTAAAGCTACCTATAAATGAAGACATTATTACATTGCAGCTCGTGGCAGAACTATCATGTTTAAAAATTCTCATCCAGGATCAGAAACAGAACGTATCAGAAATCAAAATTGAAggtaaatatatctatttcctgttaggattgactaaattcataaggcagcat Alignment from Spaln_aa2Genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gtcatctgttagtaaatctcctgataccctcgcatttatgcttattttagCTTTAAAGCTACCTATAAATGAAGACATTATTACATTGCAGCTCGTGGCAGAACTATCATGTTTAAAAATTCTCATCCAGGATCAGAAACAGAACGTATCAGAAATCAAAATTGAAGgtaaatatatctatttcctgttaggattgactaaattcataaggcagcat Alignment from Spaln_nt2Genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gtcatctgttagtaaatctcctgataccctcgcatttatgcttattttagCTTTAAAGCTACCTATAAATGAAGACATTATTACATTGCAGCTCGTGGCAGAACTATCATGTTTAAAAATTCTCATCCAGGATCAGAAACAGAACGTATCAGAAATCAAAATTGAAGgtaaatatatctatttcctgttaggattgactaaattcataaggcagcat Alignment from Pairagon CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gtcatctgttagtaaatctcctgataccctcgcatttatgcttattttagCTTTAAAGCTACCTATAAATGAAGACATTATTACATTGCAGCTCGTGGCAGAACTATCATGTTTAAAAATTCTCATCCAGGATCAGAAACAGAACGTATCAGAAATCAAAATTGAAGgtaaatatatctatttcctgttaggattgactaaattcataaggcagcat Alignment from Exonerate_protein2genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gtcatctgttagtaaatctcctgataccctcgcatttatgcttattttagCTTTAAAGCTACCTATAAATGAAGACATTATTACATTGCAGCTCGTGGCAGAACTATCATGTTTAAAAATTCTCATCCAGGATCAGAAACAGAACGTATCAGAAATCAAAATTGAAGgtaaatatatctatttcctgttaggattgactaaattcataaggcagcat Alignment from Exonerate_coding2genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gtcatctgttagtaaatctcctgataccctcgcatttatgcttattttagCTTTAAAGCTACCTATAAATGAAGACATTATTACATTGCAGCTCGTGGCAGAACTATCATGTTTAAAAATTCTCATCCAGGATCAGAAACAGAACGTATCAGAAATCAAAATTGAAGgtaaatatatctatttcctgttaggattgactaaattcataaggcagcat Alignment from GeneWise CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAA--------------------------------------------------- gtcatctgttagtaaatctcctgataccctcgcatttatgcttattttagCTTTAAAGCTACCTATAAATGAAGACATTATTACATTGCAGCTCGTGGCAGAACTATCATGTTTAAAAATTCTCATCCAGGATCAGAAACAGAACGTATCAGAAATCAAAATTGAAGGTAAATATATCTATTTCCTGTTAGGATTGACTAAATTCATAAGGCAGCAT #### Vps13a_ID4094_29 --> 0 - 1 Original Alignment GTGAATTTTTCCTCTTTGGATATTCATTTACACACTGAAGCACTTCTGAATACAATGAATTATCTTAATAATATTCTTCCGGAATTAAGGGAAAAATCTGCCTCGGTGTCTGCTGCAGAGCCGGAAGACAAAGGGGACATCATTAAAAAACTTg gttagttctgtcttgaggtcaatttttgttggcttctccatctcttccagGTCAATTTTTCTTCTTTGGATATCCATCTACAG---------CTCCTAAGTACAATGAACTACCTTAATAATATTCTTCCAGAATTACGAGAAGAAGCAGCCTCAGTGTCAGCTGCTCAACCAGAGGACAAGGGGGACATCATTAAGAAACTAggtaagtctcttttataactaaggtagacctcttaaccacctgtcagttga Alignment from CESAR GTGAATTTTTCCTCTTTGGATATTCATTTACACACTGAAGCACTTCTGAATACAATGAATTATCTTAATAATATTCTTCCGGAATTAAGGGAAAAATCTGCCTCGGTGTCTGCTGCAGAGCCGGAAGACAAAGGGGACATCATTAAAAAACTTg gttagttctgtcttgaggtcaatttttgttggcttctccatctcttccagGTCAATTTTTCTTCTTTGGATATCCATCTACAG---------CTCCTAAGTACAATGAACTACCTTAATAATATTCTTCCAGAATTACGAGAAGAAGCAGCCTCAGTGTCAGCTGCTCAACCAGAGGACAAGGGGGACATCATTAAGAAACTAggtaagtctcttttataactaaggtagacctcttaaccacctgtcagttga Alignment from Spaln_aa2Genome GTGAATTTTTCCTCTTTGGATATTCATTTACACACTGAAGCACTTCTGAATACAATGAATTATCTTAATAATATTCTTCCGGAATTAAGGGAAAAATCTGCCTCGGTGTCTGCTGCAGAGCCGGAAGACAAAGGGGACATCATTAAAAAACTTG gttagttctgtcttgaggtcaatttttgttggcttctccatctcttccagGTCAATTTTTCTTCTTTGGATATCCATCTACAG---------CTCCTAAGTACAATGAACTACCTTAATAATATTCTTCCAGAATTACGAGAAGAAGCAGCCTCAGTGTCAGCTGCTCAACCAGAGGACAAGGGGGACATCATTAAGAAACTAGgtaagtctcttttataactaaggtagacctcttaaccacctgtcagttga Alignment from Spaln_nt2Genome GTGAATTTTTCCTCTTTGGATATTCATTTACACACTGAAGCACTTCTGAATACAATGAATTATCTTAATAATATTCTTCCGGAATTAAGGGAAAAATCTGCCTCGGTGTCTGCTGCAGAGCCGGAAGACAAAGGGGACATCATTAAAAAACTTG gttagttctgtcttgaggtcaatttttgttggcttctccatctcttccagGTCAATTTTTCTTCTTTGGATATCCATCTACA---------GCTCCTAAGTACAATGAACTACCTTAATAATATTCTTCCAGAATTACGAGAAGAAGCAGCCTCAGTGTCAGCTGCTCAACCAGAGGACAAGGGGGACATCATTAAGAAACTAGgtaagtctcttttataactaaggtagacctcttaaccacctgtcagttga Alignment from Pairagon GTGAATTTTTCCTCTTTGGATATTCATTTACACACTGAAGCACTTCTGAATACAATGAATTATCTTAATAATATTCTTCCGGAATTAAGGGAAAAATCTGCCTCGGTGTCTGCTGCAGAGCCGGAAGACAAAGGGGACATCATTAAAAAACTTG gttagttctgtcttgaggtcaatttttgttggcttctccatctcttccagGTCAATTTTTCTTCTTTGGATATCCATCTACA---------GCTCCTAAGTACAATGAACTACCTTAATAATATTCTTCCAGAATTACGAGAAGAAGCAGCCTCAGTGTCAGCTGCTCAACCAGAGGACAAGGGGGACATCATTAAGAAACTAGgtaagtctcttttataactaaggtagacctcttaaccacctgtcagttga Alignment from Exonerate_protein2genome GTGAATTTTTCCTCTTTGGATATTCATTTACACACTGAAGCACTTCTGAATACAATGAATTATCTTAATAATATTCTTCCGGAATTAAGGGAAAAATCTGCCTCGGTGTCTGCTGCAGAGCCGGAAGACAAAGGGGACATCATTAAAAAACTTG gttagttctgtcttgaggtcaatttttgttggcttctccatctcttccagGTCAATTTTTCTTCTTTGGATATCCATCTACAG---------CTCCTAAGTACAATGAACTACCTTAATAATATTCTTCCAGAATTACGAGAAGAAGCAGCCTCAGTGTCAGCTGCTCAACCAGAGGACAAGGGGGACATCATTAAGAAACTAGgtaagtctcttttataactaaggtagacctcttaaccacctgtcagttga Alignment from Exonerate_coding2genome GTGAATTTTTCCTCTTTGGATATTCATTTACACACTGAAGCACTTCTGAATACAATGAATTATCTTAATAATATTCTTCCGGAATTAAGGGAAAAATCTGCCTCGGTGTCTGCTGCAGAGCCGGAAGACAAAGGGGACATCATTAAAAAACTTG gttagttctgtcttgaggtcaatttttgttggcttctccatctcttccagGTCAATTTTTCTTCTTTGGATATCCATCTACAG---------CTCCTAAGTACAATGAACTACCTTAATAATATTCTTCCAGAATTACGAGAAGAAGCAGCCTCAGTGTCAGCTGCTCAACCAGAGGACAAGGGGGACATCATTAAGAAACTAGgtaagtctcttttataactaaggtagacctcttaaccacctgtcagttga Alignment from GeneWise GTGAATTTTTCCTCTTTGGATATTCATTTACACACTGAAGCACTTCTGAATACAATGAATTATCTTAATAATATTCTTCCGGAATTAAGGGAAAAATCTGCCTCGGTGTCTGCTGCAGAGCCGGAAGACAAAGGGGACATCATTAAAAAACTTG gttagttctgtcttgaggtcaatttttgttggcttctccatctcttccagGTCAATTTTTCTTCTTTGGATATCCATCTACAG---------CTCCTAAGTACAATGAACTACCTTAATAATATTCTTCCAGAATTACGAGAAGAAGCAGCCTCAGTGTCAGCTGCTCAACCAGAGGACAAGGGGGACATCATTAAGAAACTAGgtaagtctcttttataactaaggtagacctcttaaccacctgtcagttga #### Vps13a_ID4095_28 --> 0 - 0 Original Alignment GTTGAAAAAAATGCACCAAATTTGAATAGTACCTATAACAATGTTTTACAACTTATTAAG taaatttgcagctaattgctccttgcccatctcctattccctctcctcagGTGGAAAAGAATGCACCAAATTTGAATAGTACCTATAACAATGTTCTACAACTGATTAAGgtaatccagcatgatttagagctgatactaagatactcataactatcacc Alignment from CESAR GTTGAAAAAAATGCACCAAATTTGAATAGTACCTATAACAATGTTTTACAACTTATTAAG taaatttgcagctaattgctccttgcccatctcctattccctctcctcagGTGGAAAAGAATGCACCAAATTTGAATAGTACCTATAACAATGTTCTACAACTGATTAAGgtaatccagcatgatttagagctgatactaagatactcataactatcacc Alignment from Spaln_aa2Genome GTTGAAAAAAATGCACCAAATTTGAATAGTACCTATAACAATGTTTTACAACTTATTAAG taaatttgcagctaattgctccttgcccatctcctattccctctcctcagGTGGAAAAGAATGCACCAAATTTGAATAGTACCTATAACAATGTTCTACAACTGATTAAGgtaatccagcatgatttagagctgatactaagatactcataactatcacc Alignment from Spaln_nt2Genome GTTGAAAAAAATGCACCAAATTTGAATAGTACCTATAACAATGTTTTACAACTTATTAAG taaatttgcagctaattgctccttgcccatctcctattccctctcctcagGTGGAAAAGAATGCACCAAATTTGAATAGTACCTATAACAATGTTCTACAACTGATTAAGgtaatccagcatgatttagagctgatactaagatactcataactatcacc Alignment from Pairagon GTTGAAAAAAATGCACCAAATTTGAATAGTACCTATAACAATGTTTTACAACTTATTAAG taaatttgcagctaattgctccttgcccatctcctattccctctcctcagGTGGAAAAGAATGCACCAAATTTGAATAGTACCTATAACAATGTTCTACAACTGATTAAGgtaatccagcatgatttagagctgatactaagatactcataactatcacc Alignment from Exonerate_protein2genome GTTGAAAAAAATGCACCAAATTTGAATAGTACCTATAACAATGTTTTACAACTTATTAAG taaatttgcagctaattgctccttgcccatctcctattccctctcctcagGTGGAAAAGAATGCACCAAATTTGAATAGTACCTATAACAATGTTCTACAACTGATTAAGgtaatccagcatgatttagagctgatactaagatactcataactatcacc Alignment from Exonerate_coding2genome GTTGAAAAAAATGCACCAAATTTGAATAGTACCTATAACAATGTTTTACAACTTATTAAG taaatttgcagctaattgctccttgcccatctcctattccctctcctcagGTGGAAAAGAATGCACCAAATTTGAATAGTACCTATAACAATGTTCTACAACTGATTAAGgtaatccagcatgatttagagctgatactaagatactcataactatcacc Alignment from GeneWise GTTGAAAAAAATGCACCAAATTTGAATAGTACCTATAACAATGTTTTACAACTTATTAAG taaatttgcagctaattgctccttgcccatctcctattccctctcctcagGTGGAAAAGAATGCACCAAATTTGAATAGTACCTATAACAATGTTCTACAACTGATTAAGgtaatccagcatgatttagagctgatactaagatactcataactatcacc #### Vps13a_ID4097_26 --> 0 - 1 Original Alignment GTGTCCATTCAGTTTTATCACCTGGTGGGAGACTGTGAACTACCTGTGCTGGAAATGGGTGCTTTAGGATTGGGAACAGAAGCTGAGTTTAGAACATTTGACTTGAAAGGAAGTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGAATATTTAg catagattcacatctgctataggattacaagttcctcccattgcacatagGTGTCCATACGATTTTAT---CTGGTGGGAGACTGCGAACTACCTGTACTGGGAATGGGGGCTTTAGGACTGGGGACCGAAGCCAAGTTTAGAACATTTGAGTTGGAAGGAACTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGGCTACTTGggtgagaccattagccaggccttactaacacattcagaaatcttataattc Alignment from CESAR GTGTCCATTCAGTTTTATCACCTGGTGGGAGACTGTGAACTACCTGTGCTGGAAATGGGTGCTTTAGGATTGGGAACAGAAGCTGAGTTTAGAACATTTGACTTGAAAGGAAGTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGAATATTTAg catagattcacatctgctataggattacaagttcctcccattgcacatagGTGTCCATACGATTTTAT---CTGGTGGGAGACTGCGAACTACCTGTACTGGGAATGGGGGCTTTAGGACTGGGGACCGAAGCCAAGTTTAGAACATTTGAGTTGGAAGGAACTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGGCTACTTGggtgagaccattagccaggccttactaacacattcagaaatcttataattc Alignment from Spaln_aa2Genome GTGTCCATTCAGTTTTATCACCTGGTGGGAGACTGTGAACTACCTGTGCTGGAAATGGGTGCTTTAGGATTGGGAACAGAAGCTGAGTTTAGAACATTTGACTTGAAAGGAAGTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGAATATTTAG catagattcacatctgctataggattacaagttcctcccattgcacatagGTGTCCATACGATTTTAT---CTGGTGGGAGACTGCGAACTACCTGTACTGGGAATGGGGGCTTTAGGACTGGGGACCGAAGCCAAGTTTAGAACATTTGAGTTGGAAGGAACTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGGCTACTTGGgtgagaccattagccaggccttactaacacattcagaaatcttataattc Alignment from Spaln_nt2Genome GTGTCCATTCAGTTTTATCACCTGGTGGGAGACTGTGAACTACCTGTGCTGGAAATGGGTGCTTTAGGATTGGGAACAGAAGCTGAGTTTAGAACATTTGACTTGAAAGGAAGTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGAATATTTAG catagattcacatctgctataggattacaagttcctcccattgcacatagGTGTCCATACGATTTTAT---CTGGTGGGAGACTGCGAACTACCTGTACTGGGAATGGGGGCTTTAGGACTGGGGACCGAAGCCAAGTTTAGAACATTTGAGTTGGAAGGAACTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGGCTACTTGGgtgagaccattagccaggccttactaacacattcagaaatcttataattc Alignment from Pairagon GTGTCCATTCAGTTTTATCACCTGGTGGGAGACTGTGAACTACCTGTGCTGGAAATGGGTGCTTTAGGATTGGGAACAGAAGCTGAGTTTAGAACATTTGACTTGAAAGGAAGTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGAATATTTAG catagattcacatctgctataggattacaagttcctcccattgcacatagGTGTCCATACGATTTTAT---CTGGTGGGAGACTGCGAACTACCTGTACTGGGAATGGGGGCTTTAGGACTGGGGACCGAAGCCAAGTTTAGAACATTTGAGTTGGAAGGAACTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGGCTACTTGGgtgagaccattagccaggccttactaacacattcagaaatcttataattc Alignment from Exonerate_protein2genome GTGTCCATTCAGTTTTATCACCTGGTGGGAGACTGTGAACTACCTGTGCTGGAAATGGGTGCTTTAGGATTGGGAACAGAAGCTGAGTTTAGAACATTTGACTTGAAAGGAAGTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGAATATTTAG catagattcacatctgctataggattacaagttcctcccattgcacatagGTGTCCATACGATTTTAT---CTGGTGGGAGACTGCGAACTACCTGTACTGGGAATGGGGGCTTTAGGACTGGGGACCGAAGCCAAGTTTAGAACATTTGAGTTGGAAGGAACTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGGCTACTTGGgtgagaccattagccaggccttactaacacattcagaaatcttataattc Alignment from Exonerate_coding2genome GTGTCCATTCAGTTTTATCACCTGGTGGGAGACTGTGAACTACCTGTGCTGGAAATGGGTGCTTTAGGATTGGGAACAGAAGCTGAGTTTAGAACATTTGACTTGAAAGGAAGTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGAATATTTAG catagattcacatctgctataggattacaagttcctcccattgcacatagGTGTCCATACGATTTTAT---CTGGTGGGAGACTGCGAACTACCTGTACTGGGAATGGGGGCTTTAGGACTGGGGACCGAAGCCAAGTTTAGAACATTTGAGTTGGAAGGAACTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGGCTACTTGGgtgagaccattagccaggccttactaacacattcagaaatcttataattc Alignment from GeneWise GTGTCCATTCAGTTTTATCACCTGGTGGGAGACTGTGAACTACCTGTGCTGGAAATGGGTGCTTTAGGATTGGGAACAGAAGCTGAGTTTAGAACATTTGACTTGAAAGGAAGTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGAATATTTAG catagattcacatctgctataggattacaagttcctcccattgcacatagGTGTCCATACGATTTTAT---CTGGTGGGAGACTGCGAACTACCTGTACTGGGAATGGGGGCTTTAGGACTGGGGACCGAAGCCAAGTTTAGAACATTTGAGTTGGAAGGAACTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGGCTACTTGGgtgagaccattagccaggccttactaacacattcagaaatcttataattc #### Vps13a_ID4099_24 --> 0 - 1 Original Alignment ATTCAAGCATCTGCTTTGCCAGTATCA---CACATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATg caaaatttgtaaagaagttttcgctgtgtgtctctcctctctccttacagATT---GCATCTACTTTGCCGGTGTCACATCATGTTTCCAAGGAACTGATACCTTCACTCAAACATCCTGTTATGGAAGATggtactgataagctcatgaccaggacactttatgtaggtctaccctaaatc Alignment from CESAR ATTCAAGCATCTGCTTTGCCAGTATCA---CACATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATg caaaatttgtaaagaagttttcgctgtgtgtctctcctctctccttacagATT---GCATCTACTTTGCCGGTGTCACATCATGTTTCCAAGGAACTGATACCTTCACTCAAACATCCTGTTATGGAAGATggtactgataagctcatgaccaggacactttatgtaggtctaccctaaatc Alignment from Spaln_aa2Genome ATTCAAGCATCTGCTTTGCCAGTATCA---CACATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATG caaaatttgtaaagaagttttcgctgtgtgtctctcctctctccttacagATT---GCATCTACTTTGCCGGTGTCACATCATGTTTCCAAGGAACTGATACCTTCACTCAAACATCCTGTTATGGAAGATGgtactgataagctcatgaccaggacactttatgtaggtctaccctaaatc Alignment from Spaln_nt2Genome ATTCAAGCATCTGCTTTGCCAGTATCACA-CATTTCTC--AGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATG caaaatttgtaaagaagttttcgctgtgtgtctctcctctctccttacagATT---GCATCTACTTTGCCGGTGTCACATCATGTTTCCAAGGAACTGATACCTTCACTCAAACATCCTGTTATGGAAGATGgtactgataagctcatgaccaggacactttatgtaggtctaccctaaatc Alignment from Pairagon ATTCAAGCATCTGCTTTGCCAGTATCACA------------------------------CATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATG caaaatttgtaaagaagttttcgctgtgtgtctctcctctctccttacagATT---GCATCTACTTTGCCGGTGTCACATCATGTTTCCAAGGAACTGATACCTTCACTCA---------------------------AACATCCTGTTATGGAAGATGgtactgataagctcatgaccaggacactttatgtaggtctaccctaaatc Alignment from Exonerate_protein2genome ATTCAAGCATCTGCTTTGCCAGTATCACACATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATG caaaatttgtaaagaagttttcgctgtgtgtctctcctctctccttacagATTGCATCTACTTTGCCGGTGTCACATCATGTTTCCAAGGAACTGATACCTTCACTCAAACATCCTGTTATGGAAGATGgtactgataagctcatgaccaggacactttatgtaggtctaccctaaatc Alignment from Exonerate_coding2genome caaaatttgtaaagaagttttcgctgtgtgtctctcctctctccttacagattgcatctactttgccggtgtcacatcatgtttccaaggaactgataccttcactcaaacatcctgttatggaagatggtactgataagctcatgaccaggacactttatgtaggtctaccctaaatc Alignment from GeneWise ATTCAAGCATCTGCTTTGCCAGTATCACAC---ATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATG caaaatttgtaaagaagttttcgctgtgtgtctctcctctctccttacagATT---GCATCTACTTTGCCGGTGTCACATCATGTTTCCAAGGAACTGATACCTTCACTCAAACATCCTGTTATGGAAGATGgtactgataagctcatgaccaggacactttatgtaggtctaccctaaatc #### Vps13a_ID4103_20 --> 2 - 0 Original Alignment gtTTGCTGTATGTTATTGAAACACAGAAAGTTCTTGATCTCAGAATTAATGTAAAGGCTTCATATGTTATTGTCCCACAATATGGAAATTTTAGCCCTACGTCAAATCTACTTCTCCTGGATCTTGGTCATTTAAAG gctattattgcaggtttatactcattttaccgcggccttttctctcgcaggtTTGCTGTATGTCATTGAAACACAGAAAGTTCTTGATCTCAGGATCAATGTAAAGGCTTCATATGTCATTGTACCACAATATGGGAATTTTAGCCCGACATCAAATCTGCTTCTCCTTGACCTTGGTCACTTGAAGgttagtattcttaatcatcttttctcatccaaccaactttactgccaaag Alignment from CESAR gtTTGCTGTATGTTATTGAAACACAGAAAGTTCTTGATCTCAGAATTAATGTAAAGGCTTCATATGTTATTGTCCCACAATATGGAAATTTTAGCCCTACGTCAAATCTACTTCTCCTGGATCTTGGTCATTTAAAG gctattattgcaggtttatactcattttaccgcggccttttctctcgcaggtTTGCTGTATGTCATTGAAACACAGAAAGTTCTTGATCTCAGGATCAATGTAAAGGCTTCATATGTCATTGTACCACAATATGGGAATTTTAGCCCGACATCAAATCTGCTTCTCCTTGACCTTGGTCACTTGAAGgttagtattcttaatcatcttttctcatccaaccaactttactgccaaag Alignment from Spaln_aa2Genome GTTTGCTGTATGTTATTGAAACACAGAAAGTTCTTGATCTCAGAATTAATGTAAAGGCTTCATATGTTATTGTCCCACAATATGGAAATTTTAGCCCTACGTCAAATCTACTTCTCCTGGATCTTGGTCATTTAAAG gctattattgcaggtttatactcattttaccgcggccttttctctcgcagGTTTGCTGTATGTCATTGAAACACAGAAAGTTCTTGATCTCAGGATCAATGTAAAGGCTTCATATGTCATTGTACCACAATATGGGAATTTTAGCCCGACATCAAATCTGCTTCTCCTTGACCTTGGTCACTTGAAGgttagtattcttaatcatcttttctcatccaaccaactttactgccaaag Alignment from Spaln_nt2Genome GTTTGCTGTATGTTATTGAAACACAGAAAGTTCTTGATCTCAGAATTAATGTAAAGGCTTCATATGTTATTGTCCCACAATATGGAAATTTTAGCCCTACGTCAAATCTACTTCTCCTGGATCTTGGTCATTTAAAG gctattattgcaggtttatactcattttaccgcggccttttctctcgcagGTTTGCTGTATGTCATTGAAACACAGAAAGTTCTTGATCTCAGGATCAATGTAAAGGCTTCATATGTCATTGTACCACAATATGGGAATTTTAGCCCGACATCAAATCTGCTTCTCCTTGACCTTGGTCACTTGAAGgttagtattcttaatcatcttttctcatccaaccaactttactgccaaag Alignment from Pairagon GTTTGCTGTATGTTATTGAAACACAGAAAGTTCTTGATCTCAGAATTAATGTAAAGGCTTCATATGTTATTGTCCCACAATATGGAAATTTTAGCCCTACGTCAAATCTACTTCTCCTGGATCTTGGTCATTTAAAG gctattattgcaggtttatactcattttaccgcggccttttctctcgcagGTTTGCTGTATGTCATTGAAACACAGAAAGTTCTTGATCTCAGGATCAATGTAAAGGCTTCATATGTCATTGTACCACAATATGGGAATTTTAGCCCGACATCAAATCTGCTTCTCCTTGACCTTGGTCACTTGAAGgttagtattcttaatcatcttttctcatccaaccaactttactgccaaag Alignment from Exonerate_protein2genome GTTTGCTGTATGTTATTGAAACACAGAAAGTTCTTGATCTCAGAATTAATGTAAAGGCTTCATATGTTATTGTCCCACAATATGGAAATTTTAGCCCTACGTCAAATCTACTTCTCCTGGATCTTGGTCATTTAAAG gctattattgcaggtttatactcattttaccgcggccttttctctcgcagGTTTGCTGTATGTCATTGAAACACAGAAAGTTCTTGATCTCAGGATCAATGTAAAGGCTTCATATGTCATTGTACCACAATATGGGAATTTTAGCCCGACATCAAATCTGCTTCTCCTTGACCTTGGTCACTTGAAGgttagtattcttaatcatcttttctcatccaaccaactttactgccaaag Alignment from Exonerate_coding2genome GTTTGCTGTATGTTATTGAAACACAGAAAGTTCTTGATCTCAGAATTAATGTAAAGGCTTCATATGTTATTGTCCCACAATATGGAAATTTTAGCCCTACGTCAAATCTACTTCTCCTGGATCTTGGTCATTTAAAG gctattattgcaggtttatactcattttaccgcggccttttctctcgcagGTTTGCTGTATGTCATTGAAACACAGAAAGTTCTTGATCTCAGGATCAATGTAAAGGCTTCATATGTCATTGTACCACAATATGGGAATTTTAGCCCGACATCAAATCTGCTTCTCCTTGACCTTGGTCACTTGAAGgttagtattcttaatcatcttttctcatccaaccaactttactgccaaag Alignment from GeneWise GTTTGCTGTATGTTATTGAAACACAGAAAGTTCTTGATCTCAGAATTAATGTAAAGGCTTCATATGTTATTGTCCCACAATATGGAAATTTTAGCCCTACGTCAAATCTACTTCTCCTGGATCTTGGTCATTTAAAG gctattattgcaggtttatactcattttaccgcggccttttctctcgcagGTTTGCTGTATGTCATTGAAACACAGAAAGTTCTTGATCTCAGGATCAATGTAAAGGCTTCATATGTCATTGTACCACAATATGGGAATTTTAGCCCGACATCAAATCTGCTTCTCCTTGACCTTGGTCACTTGAAGgttagtattcttaatcatcttttctcatccaaccaactttactgccaaag #### Vps13a_ID4106_17 --> 0 - 2 Original Alignment TTTGAAGCCTTGAAGTTTTTTGTTCACTTGAAAAGCATGTCTATTGTTCTAAGAGAAAATCACCAAAAGCCGGAGCTGTTAAACGTTGTAGTGGAAGGACTTAGTACTTCTGTTGTGCAAAGACCAGGAGCACAAGCCATAaa cccctattcttcttccaaaccacctctatattctcttttcttttatgtagTTTGAGACTTTCAAGTTTTTTGTTCATTTGAAAAGCATGTCTATTGTTTTGAGAGAGAATCACCAAAAGTTGGAGCTGTTAAATGTTGTAGCGGAAGGACTGAGTACTTCTGTGGTGCAATGGCCAGGGGCACAAGCTAGAaagtatgtatgcatactagtcccattattcatgaacagcaaaaggctaaaat Alignment from CESAR TTTGAAGCCTTGAAGTTTTTTGTTCACTTGAAAAGCATGTCTATTGTTCTAAGAGAAAATCACCAAAAGCCGGAGCTGTTAAACGTTGTAGTGGAAGGACTTAGTACTTCTGTTGTGCAAAGACCAGGAGCACAAGCCATAaa cccctattcttcttccaaaccacctctatattctcttttcttttatgtagTTTGAGACTTTCAAGTTTTTTGTTCATTTGAAAAGCATGTCTATTGTTTTGAGAGAGAATCACCAAAAGTTGGAGCTGTTAAATGTTGTAGCGGAAGGACTGAGTACTTCTGTGGTGCAATGGCCAGGGGCACAAGCTAGAaagtatgtatgcatactagtcccattattcatgaacagcaaaaggctaaaat Alignment from Spaln_aa2Genome TTTGAAGCCTTGAAGTTTTTTGTTCACTTGAAAAGCATGTCTATTGTTCTAAGAGAAAATCACCAAAAGCCGGAGCTGTTAAACGTTGTAGTGGAAGGACTTAGTACTTCTGTTGTGCAAAGACCAGGAGCACAAGCCATAAA cccctattcttcttccaaaccacctctatattctcttttcttttatgtagTTTGAGACTTTCAAGTTTTTTGTTCATTTGAAAAGCATGTCTATTGTTTTGAGAGAGAATCACCAAAAGTTGGAGCTGTTAAATGTTGTAGCGGAAGGACTGAGTACTTCTGTGGTGCAATGGCCAGGGGCACAAGCTAGAAAgtatgtatgcatactagtcccattattcatgaacagcaaaaggctaaaat Alignment from Spaln_nt2Genome TTTGAAGCCTTGAAGTTTTTTGTTCACTTGAAAAGCATGTCTATTGTTCTAAGAGAAAATCACCAAAAGCCGGAGCTGTTAAACGTTGTAGTGGAAGGACTTAGTACTTCTGTTGTGCAAAGACCAGGAGCACAAGCCATAAA cccctattcttcttccaaaccacctctatattctcttttcttttatgtagTTTGAGACTTTCAAGTTTTTTGTTCATTTGAAAAGCATGTCTATTGTTTTGAGAGAGAATCACCAAAAGTTGGAGCTGTTAAATGTTGTAGCGGAAGGACTGAGTACTTCTGTGGTGCAATGGCCAGGGGCACAAGCTAGAAAgtatgtatgcatactagtcccattattcatgaacagcaaaaggctaaaat Alignment from Pairagon TTTGAAGCCTTGAAGTTTTTTGTTCACTTGAAAAGCATGTCTATTGTTCTAAGAGAAAATCACCAAAAGCCGGAGCTGTTAAACGTTGTAGTGGAAGGACTTAGTACTTCTGTTGTGCAAAGACCAGGAGCACAAGCCATAAA cccctattcttcttccaaaccacctctatattctcttttcttttatgtagTTTGAGACTTTCAAGTTTTTTGTTCATTTGAAAAGCATGTCTATTGTTTTGAGAGAGAATCACCAAAAGTTGGAGCTGTTAAATGTTGTAGCGGAAGGACTGAGTACTTCTGTGGTGCAATGGCCAGGGGCACAAGCTAGAAAgtatgtatgcatactagtcccattattcatgaacagcaaaaggctaaaat Alignment from Exonerate_protein2genome TTTGAAGCCTTGAAGTTTTTTGTTCACTTGAAAAGCATGTCTATTGTTCTAAGAGAAAATCACCAAAAGCCGGAGCTGTTAAACGTTGTAGTGGAAGGACTTAGTACTTCTGTTGTGCAAAGACCAGGAGCACAAGCCATAAA cccctattcttcttccaaaccacctctatattctcttttcttttatgtagTTTGAGACTTTCAAGTTTTTTGTTCATTTGAAAAGCATGTCTATTGTTTTGAGAGAGAATCACCAAAAGTTGGAGCTGTTAAATGTTGTAGCGGAAGGACTGAGTACTTCTGTGGTGCAATGGCCAGGGGCACAAGCTAGAAAgtatgtatgcatactagtcccattattcatgaacagcaaaaggctaaaat Alignment from Exonerate_coding2genome TTTGAAGCCTTGAAGTTTTTTGTTCACTTGAAAAGCATGTCTATTGTTCTAAGAGAAAATCACCAAAAGCCGGAGCTGTTAAACGTTGTAGTGGAAGGACTTAGTACTTCTGTTGTGCAAAGACCAGGAGCACAAGCCATAAA cccctattcttcttccaaaccacctctatattctcttttcttttatgtagTTTGAGACTTTCAAGTTTTTTGTTCATTTGAAAAGCATGTCTATTGTTTTGAGAGAGAATCACCAAAAGTTGGAGCTGTTAAATGTTGTAGCGGAAGGACTGAGTACTTCTGTGGTGCAATGGCCAGGGGCACAAGCTAGAAAgtatgtatgcatactagtcccattattcatgaacagcaaaaggctaaaat Alignment from GeneWise TTTGAAGCCTTGAAGTTTTTTGTTCACTTGAAAAGCATGTCTATTGTTCTAAGAGAAAATCACCAAAAGCCGGAGCTGTTAAACGTTGTAGTGGAAGGACTTAGTACTTCTGTTGTGCAAAGACCAGGAGCACAAGCCATAAA cccctattcttcttccaaaccacctctatattctcttttcttttatgtagTTTGAGACTTTCAAGTTTTTTGTTCATTTGAAAAGCATGTCTATTGTTTTGAGAGAGAATCACCAAAAGTTGGAGCTGTTAAATGTTGTAGCGGAAGGACTGAGTACTTCTGTGGTGCAATGGCCAGGGGCACAAGCTAGAAAgtatgtatgcatactagtcccattattcatgaacagcaaaaggctaaaat #### Vps13a_ID4107_16 --> 2 - 0 Original Alignment ttCTGGAAGAAATGTTGACACCTGAAGAAAAGTCGTTACTTTATGAAGCAATTGGTTATAGTGAAACAGCAGTTGACCCAACCTTGCCAAAAACA tgcaaatatgcggcattatgagggctctttttctgtaatatcttgtacagttTTGGAAGAAATGTTAACACCTGAGGAAAAATCACTACTCTACGAAGCGATTGGTTATAGTGAAATGGCAGCTGATCCAACATTGCCGAAAACAgtaagatagtttactcattctatagtctgtaaacatttagattaccattg Alignment from CESAR ttCTGGAAGAAATGTTGACACCTGAAGAAAAGTCGTTACTTTATGAAGCAATTGGTTATAGTGAAACAGCAGTTGACCCAACCTTGCCAAAAACA tgcaaatatgcggcattatgagggctctttttctgtaatatcttgtacagttTTGGAAGAAATGTTAACACCTGAGGAAAAATCACTACTCTACGAAGCGATTGGTTATAGTGAAATGGCAGCTGATCCAACATTGCCGAAAACAgtaagatagtttactcattctatagtctgtaaacatttagattaccattg Alignment from Spaln_aa2Genome TTCTGGAAGAAATGTTGACACCTGAAGAAAAGTCGTTACTTTATGAAGCAATTGGTTATAGTGAAACAGCAGTTGACCCAACCTTGCCAAAAACA tgcaaatatgcggcattatgagggctctttttctgtaatatcttgtacagTTTTGGAAGAAATGTTAACACCTGAGGAAAAATCACTACTCTACGAAGCGATTGGTTATAGTGAAATGGCAGCTGATCCAACATTGCCGAAAACAgtaagatagtttactcattctatagtctgtaaacatttagattaccattg Alignment from Spaln_nt2Genome TTCTGGAAGAAATGTTGACACCTGAAGAAAAGTCGTTACTTTATGAAGCAATTGGTTATAGTGAAACAGCAGTTGACCCAACCTTGCCAAAAACA tgcaaatatgcggcattatgagggctctttttctgtaatatcttgtacagTTTTGGAAGAAATGTTAACACCTGAGGAAAAATCACTACTCTACGAAGCGATTGGTTATAGTGAAATGGCAGCTGATCCAACATTGCCGAAAACAgtaagatagtttactcattctatagtctgtaaacatttagattaccattg Alignment from Pairagon TTCTGGAAGAAATGTTGACACCTGAAGAAAAGTCGTTACTTTATGAAGCAATTGGTTATAGTGAAACAGCAGTTGACCCAACCTTGCCAAAAACA tgcaaatatgcggcattatgagggctctttttctgtaatatcttgtacagTTTTGGAAGAAATGTTAACACCTGAGGAAAAATCACTACTCTACGAAGCGATTGGTTATAGTGAAATGGCAGCTGATCCAACATTGCCGAAAACAgtaagatagtttactcattctatagtctgtaaacatttagattaccattg Alignment from Exonerate_protein2genome TTCTGGAAGAAATGTTGACACCTGAAGAAAAGTCGTTACTTTATGAAGCAATTGGTTATAGTGAAACAGCAGTTGACCCAACCTTGCCAAAAACA tgcaaatatgcggcattatgagggctctttttctgtaatatcttgtacagTTTTGGAAGAAATGTTAACACCTGAGGAAAAATCACTACTCTACGAAGCGATTGGTTATAGTGAAATGGCAGCTGATCCAACATTGCCGAAAACAgtaagatagtttactcattctatagtctgtaaacatttagattaccattg Alignment from Exonerate_coding2genome TTCTGGAAGAAATGTTGACACCTGAAGAAAAGTCGTTACTTTATGAAGCAATTGGTTATAGTGAAACAGCAGTTGACCCAACCTTGCCAAAAACA tgcaaatatgcggcattatgagggctctttttctgtaatatcttgtacagTTTTGGAAGAAATGTTAACACCTGAGGAAAAATCACTACTCTACGAAGCGATTGGTTATAGTGAAATGGCAGCTGATCCAACATTGCCGAAAACAgtaagatagtttactcattctatagtctgtaaacatttagattaccattg Alignment from GeneWise TTCTGGAAGAAATGTTGACACCTGAAGAAAAGTCGTTACTTTATGAAGCAATTGGTTATAGTGAAACAGCAGTTGACCCAACCTTGCCAAAAACA tgcaaatatgcggcattatgagggctctttttctgtaatatcttgtacagTTTTGGAAGAAATGTTAACACCTGAGGAAAAATCACTACTCTACGAAGCGATTGGTTATAGTGAAATGGCAGCTGATCCAACATTGCCGAAAACAgtaagatagtttactcattctatagtctgtaaacatttagattaccattg #### Vps13a_ID4108_15 --> 0 - 1 Original Alignment GCAAAGAAAGCTGGATATAAAATTTACAAAGAAGGAGTCAAAGATCCAGAAGATAATGCAGGATGGTTTGGCTGGTTGTGGACTTGGTCAGAATCAAATGCTAATCAACAACAAGATGTGAAGCCTGGAa tcttattaacattaggtcattgtgtctaatgccttgctttctccccacagGCACAGAAAGCTGGATACAAAATTTATCAAGAAGGAGTCAACGATCCAGAAGATAATGCAGGATGGTTTGGCTGGTTATGGACTTGGTCGGAATCTAATGCCAACCAACAACAAGATGTGAAACCTGGCagtaagttaaggttctaaaatacacatagtgtttctctctcaagagttttg Alignment from CESAR GCAAAGAAAGCTGGATATAAAATTTACAAAGAAGGAGTCAAAGATCCAGAAGATAATGCAGGATGGTTTGGCTGGTTGTGGACTTGGTCAGAATCAAATGCTAATCAACAACAAGATGTGAAGCCTGGAa tcttattaacattaggtcattgtgtctaatgccttgctttctccccacagGCACAGAAAGCTGGATACAAAATTTATCAAGAAGGAGTCAACGATCCAGAAGATAATGCAGGATGGTTTGGCTGGTTATGGACTTGGTCGGAATCTAATGCCAACCAACAACAAGATGTGAAACCTGGCagtaagttaaggttctaaaatacacatagtgtttctctctcaagagttttg Alignment from Spaln_aa2Genome GCAAAGAAAGCTGGATATAAAATTTACAAAGAAGGAGTCAAAGATCCAGAAGATAATGCAGGATGGTTTGGCTGGTTGTGGACTTGGTCAGAATCAAATGCTAATCAACAACAAGATGTGAAGCCTGGAA tcttattaacattaggtcattgtgtctaatgccttgctttctccccacagGCACAGAAAGCTGGATACAAAATTTATCAAGAAGGAGTCAACGATCCAGAAGATAATGCAGGATGGTTTGGCTGGTTATGGACTTGGTCGGAATCTAATGCCAACCAACAACAAGATGTGAAACCTGGCAgtaagttaaggttctaaaatacacatagtgtttctctctcaagagttttg Alignment from Spaln_nt2Genome GCAAAGAAAGCTGGATATAAAATTTACAAAGAAGGAGTCAAAGATCCAGAAGATAATGCAGGATGGTTTGGCTGGTTGTGGACTTGGTCAGAATCAAATGCTAATCAACAACAAGATGTGAAGCCTGGAA tcttattaacattaggtcattgtgtctaatgccttgctttctccccacagGCACAGAAAGCTGGATACAAAATTTATCAAGAAGGAGTCAACGATCCAGAAGATAATGCAGGATGGTTTGGCTGGTTATGGACTTGGTCGGAATCTAATGCCAACCAACAACAAGATGTGAAACCTGGCAgtaagttaaggttctaaaatacacatagtgtttctctctcaagagttttg Alignment from Pairagon GCAAAGAAAGCTGGATATAAAATTTACAAAGAAGGAGTCAAAGATCCAGAAGATAATGCAGGATGGTTTGGCTGGTTGTGGACTTGGTCAGAATCAAATGCTAATCAACAACAAGATGTGAAGCCTGGAA tcttattaacattaggtcattgtgtctaatgccttgctttctccccacagGCACAGAAAGCTGGATACAAAATTTATCAAGAAGGAGTCAACGATCCAGAAGATAATGCAGGATGGTTTGGCTGGTTATGGACTTGGTCGGAATCTAATGCCAACCAACAACAAGATGTGAAACCTGGCAgtaagttaaggttctaaaatacacatagtgtttctctctcaagagttttg Alignment from Exonerate_protein2genome GCAAAGAAAGCTGGATATAAAATTTACAAAGAAGGAGTCAAAGATCCAGAAGATAATGCAGGATGGTTTGGCTGGTTGTGGACTTGGTCAGAATCAAATGCTAATCAACAACAAGATGTGAAGCCTGGAA tcttattaacattaggtcattgtgtctaatgccttgctttctccccacagGCACAGAAAGCTGGATACAAAATTTATCAAGAAGGAGTCAACGATCCAGAAGATAATGCAGGATGGTTTGGCTGGTTATGGACTTGGTCGGAATCTAATGCCAACCAACAACAAGATGTGAAACCTGGCAgtaagttaaggttctaaaatacacatagtgtttctctctcaagagttttg Alignment from Exonerate_coding2genome GCAAAGAAAGCTGGATATAAAATTTACAAAGAAGGAGTCAAAGATCCAGAAGATAATGCAGGATGGTTTGGCTGGTTGTGGACTTGGTCAGAATCAAATGCTAATCAACAACAAGATGTGAAGCCTGGAA tcttattaacattaggtcattgtgtctaatgccttgctttctccccacagGCACAGAAAGCTGGATACAAAATTTATCAAGAAGGAGTCAACGATCCAGAAGATAATGCAGGATGGTTTGGCTGGTTATGGACTTGGTCGGAATCTAATGCCAACCAACAACAAGATGTGAAACCTGGCAgtaagttaaggttctaaaatacacatagtgtttctctctcaagagttttg Alignment from GeneWise GCAAAGAAAGCTGGATATAAAATTTACAAAGAAGGAGTCAAAGATCCAGAAGATAATGCAGGATGGTTTGGCTGGTTGTGGACTTGGTCAGAATCAAATGCTAATCAACAACAAGATGTGAAGCCTGGAA tcttattaacattaggtcattgtgtctaatgccttgctttctccccacagGCACAGAAAGCTGGATACAAAATTTATCAAGAAGGAGTCAACGATCCAGAAGATAATGCAGGATGGTTTGGCTGGTTATGGACTTGGTCGGAATCTAATGCCAACCAACAACAAGATGTGAAACCTGGCAgtaagttaaggttctaaaatacacatagtgtttctctctcaagagttttg #### Vps13a_ID4114_9 --> 0 - 0 Original Alignment CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG agatgcattgcaaagccttgacaacaaggactccctgtctttttccttagCTAACCCGGTTAGACAACCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTCTATTTGAATGACTATGATGAATCACTGgtaattacttatatacatggttttactttcataaaggtgaatacttagct Alignment from CESAR CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG agatgcattgcaaagccttgacaacaaggactccctgtctttttccttagCTAACCCGGTTAGACAACCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTCTATTTGAATGACTATGATGAATCACTGgtaattacttatatacatggttttactttcataaaggtgaatacttagct Alignment from Spaln_aa2Genome CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG agatgcattgcaaagccttgacaacaaggactccctgtctttttccttagCTAACCCGGTTAGACAACCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTCTATTTGAATGACTATGATGAATCACTGgtaattacttatatacatggttttactttcataaaggtgaatacttagct Alignment from Spaln_nt2Genome CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG agatgcattgcaaagccttgacaacaaggactccctgtctttttccttagCTAACCCGGTTAGACAACCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTCTATTTGAATGACTATGATGAATCACTGgtaattacttatatacatggttttactttcataaaggtgaatacttagct Alignment from Pairagon CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG agatgcattgcaaagccttgacaacaaggactccctgtctttttccttagCTAACCCGGTTAGACAACCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTCTATTTGAATGACTATGATGAATCACTGgtaattacttatatacatggttttactttcataaaggtgaatacttagct Alignment from Exonerate_protein2genome CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG agatgcattgcaaagccttgacaacaaggactccctgtctttttccttagCTAACCCGGTTAGACAACCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTCTATTTGAATGACTATGATGAATCACTGgtaattacttatatacatggttttactttcataaaggtgaatacttagct Alignment from Exonerate_coding2genome CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG agatgcattgcaaagccttgacaacaaggactccctgtctttttccttagCTAACCCGGTTAGACAACCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTCTATTTGAATGACTATGATGAATCACTGgtaattacttatatacatggttttactttcataaaggtgaatacttagct Alignment from GeneWise CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG agatgcattgcaaagccttgacaacaaggactccctgtctttttccttagCTAACCCGGTTAGACAACCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTCTATTTGAATGACTATGATGAATCACTGgtaattacttatatacatggttttactttcataaaggtgaatacttagct #### Vps13a_ID4115_8 --> 0 - 0 Original Alignment ACAACTGATCAATACTGGATCCCATGTTTACATGATAATACTGAAAAGCTAGTCCGGAAG atttgagggaccacatactgaccagtcccccactgtctctccctgcttagACAACTGATGCATACTGGGTCCCATGTCTGCATGATAATTCTGAGAAATTAGTACGAAAAgtgagctaaatcttgactcatgaatcagatggacaattataaataatgtt Alignment from CESAR ACAACTGATCAATACTGGATCCCATGTTTACATGATAATACTGAAAAGCTAGTCCGGAAG atttgagggaccacatactgaccagtcccccactgtctctccctgcttagACAACTGATGCATACTGGGTCCCATGTCTGCATGATAATTCTGAGAAATTAGTACGAAAAgtgagctaaatcttgactcatgaatcagatggacaattataaataatgtt Alignment from Spaln_aa2Genome ACAACTGATCAATACTGGATCCCATGTTTACATGATAATACTGAAAAGCTAGTCCGGAAG atttgagggaccacatactgaccagtcccccactgtctctccctgcttagACAACTGATGCATACTGGGTCCCATGTCTGCATGATAATTCTGAGAAATTAGTACGAAAAgtgagctaaatcttgactcatgaatcagatggacaattataaataatgtt Alignment from Spaln_nt2Genome ACAACTGATCAATACTGGATCCCATGTTTACATGATAATACTGAAAAGCTAGTCCGGAAG atttgagggaccacatactgaccagtcccccactgtctctccctgcttagACAACTGATGCATACTGGGTCCCATGTCTGCATGATAATTCTGAGAAATTAGTACGAAAAgtgagctaaatcttgactcatgaatcagatggacaattataaataatgtt Alignment from Pairagon ACAACTGATCAATACTGGATCCCATGTTTACATGATAATACTGAAAAGCTAGTCCGGAAG atttgagggaccacatactgaccagtcccccactgtctctccctgcttagACAACTGATGCATACTGGGTCCCATGTCTGCATGATAATTCTGAGAAATTAGTACGAAAAgtgagctaaatcttgactcatgaatcagatggacaattataaataatgtt Alignment from Exonerate_protein2genome ACAACTGATCAATACTGGATCCCATGTTTACATGATAATACTGAAAAGCTAGTCCGGAAG atttgagggaccacatactgaccagtcccccactgtctctccctgcttagACAACTGATGCATACTGGGTCCCATGTCTGCATGATAATTCTGAGAAATTAGTACGAAAAgtgagctaaatcttgactcatgaatcagatggacaattataaataatgtt Alignment from Exonerate_coding2genome atttgagggaccacatactgaccagtcccccactgtctctccctgcttagacaactgatgcatactgggtcccatgtctgcatgataattctgagaaattagtacgaaaagtgagctaaatcttgactcatgaatcagatggacaattataaataatgtt Alignment from GeneWise ACAACTGATCAATACTGGATCCCATGTTTACATGATAATACTGAAAAGCTAGTCCGGAAG atttgagggaccacatactgaccagtcccccactgtctctccctgcttagACAACTGATGCATACTGGGTCCCATGTCTGCATGATAATTCTGAGAAATTAGTACGAAAAgtgagctaaatcttgactcatgaatcagatggacaattataaataatgtt #### Vps13a_ID4117_6 --> 2 - 0 Original Alignment aaAAGCCTCGGGAGGAGAAACAGGACACG---------------TTTACAGAAAAGTTAGTTACTCAGATCATACAGAACCTTCAAGTGCAAATCTCCAGCATCCATATTCGTTATGAAGACGAT ctgctgttcactctagcttgtatatctcactgagtctctacgccccgcagaaAAGCCTCGG---GAGGAACATGATACATTACGCTGGATGGTCTTCACAGAAAAGCTGGTTCCACAGATCATTCAAAACCTACAAGTCAAGATATCCAGCATCCATATATGTTACAAAGATGATgcaagtacttattatgacagtattagtatgcatatggagcaaccagtcag Alignment from CESAR aaAAGCCTCGGGAGGAGAAACAGGACACG---------------TTTACAGAAAAGTTAGTTACTCAGATCATACAGAACCTTCAAGTGCAAATCTCCAGCATCCATATTCGTTATGAAGACGAT ctgctgttcactctagcttgtatatctcactgagtctctacgccccgcagaaAAGCCTCGGGAGGAA---CATGATACATTACGCTGGATGGTCTTCACAGAAAAGCTGGTTCCACAGATCATTCAAAACCTACAAGTCAAGATATCCAGCATCCATATATGTTACAAAGATGATgcaagtacttattatgacagtattagtatgcatatggagcaaccagtcag Alignment from Spaln_aa2Genome AAAAGCCTCGGGAGGAGAAACAGGAC------------ACGTTTACAGAAAAGTTAGTTACTCAGATCATACAGAACCTTCAAGTGCAAATCTCCAGCATCCATATTCGTTATGAAGACGAT ctgctgttcactctagcttgtatatctcactgagtctctacgccccgcagAAAAGCCTCGGGAGGAACATGATACATTACGCTGGATGGTCTTCACAGAAAAGCTGGTTCCACAGATCATTCAAAACCTACAAGTCAAGATATCCAGCATCCATATATGTTACAAAGATGATgcaagtacttattatgacagtattagtatgcatatggagcaaccagtcag Alignment from Spaln_nt2Genome AAAAGCCTCGGGAGGA----GAAACAGGACACG--------TTTACAGAAAAGTTAGTTACTCAGATCATACAGAACCTTCAAGTGCAAATCTCCAGCATCCATATTCGTTATGAAGACGAT ctgctgttcactctagcttgtatatctcactgagtctctacgccccgcagAAAAGCCTCGGGAGGAACATGATACATTACGCTGGATGGTCTTCACAGAAAAGCTGGTTCCACAGATCATTCAAAACCTACAAGTCAAGATATCCAGCATCCATATATGTTACAAAGATGATgcaagtacttattatgacagtattagtatgcatatggagcaaccagtcag Alignment from Pairagon AAAAGCCTCGGGAGGAGAAACAGGACACG--------------------TTTACAGAAAAGTTAGTTACTCAGATCATACAGAACCTTCAAGTGCAAATCTCCAGCATCCATATTCGTTATGAAGACGAT ctgctgttcactctagcttgtatatctcactgagtctctacgccccgcagAAAAGCCTCGGGAGGA--------ACATGATACATTACGCTGGATGGTCTTCACAGAAAAGCTGGTTCCACAGATCATTCAAAACCTACAAGTCAAGATATCCAGCATCCATATATGTTACAAAGATGATgcaagtacttattatgacagtattagtatgcatatggagcaaccagtcag Alignment from Exonerate_protein2genome AAAAGCCTCGGGAGGAGAAACAGGAC------------ACGTTTACAGAAAAGTTAGTTACTCAGATCATACAGAACCTTCAAGTGCAAATCTCCAGCATCCATATTCGTTATGAAGACGAT ctgctgttcactctagcttgtatatctcactgagtctctacgccccgcagAAAAGCCTCGGGAGGAACATGATACATTACGCTGGATGGTCTTCACAGAAAAGCTGGTTCCACAGATCATTCAAAACCTACAAGTCAAGATATCCAGCATCCATATATGTTACAAAGATGATgcaagtacttattatgacagtattagtatgcatatggagcaaccagtcag Alignment from Exonerate_coding2genome AAAAGCCTCGGGAGGAGAAACAGGAC------------ACGTTTACAGAAAAGTTAGTTACTCAGATCATACAGAACCTTCAAGTGCAAATCTCCAGCATCCATATTCGTTATGAAGACGAT ctgctgttcactctagcttgtatatctcactgagtctctacgccccgcagAAAAGCCTCGGGAGGAACATGATACATTACGCTGGATGGTCTTCACAGAAAAGCTGGTTCCACAGATCATTCAAAACCTACAAGTCAAGATATCCAGCATCCATATATGTTACAAAGATGATgcaagtacttattatgacagtattagtatgcatatggagcaaccagtcag Alignment from GeneWise AAAAGCCTCGGGAGGAGAAACAGGAC------------ACGTTTACAGAAAAGTTAGTTACTCAGATCATACAGAACCTTCAAGTGCAAATCTCCAGCATCCATATTCGTTATGAAGACGATATC---ACAAATGGAGAC- ctgctgttcactctagcttgtatatctcactgagtctctacgccccgcagAAAAGCCTCGGGAGGAACATGATACATTACGCTGGATGGTCTTCACAGAAAAGCTGGTTCCACAGATCATTCAAAACCTACAAGTCAAGATATCCAGCATCCATATATGTTACAAAGATGATGCAAGTACTTATTATGACAgtattagtatgcatatggagcaaccagtcag #### Vps13a_ID4118_5 --> 2 - 1 Original Alignment gaATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAAGTATTTGATAAAg aactattcctgagtttaggtagacctagcatcccttcctgctttctgcaggaATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAGATAAAGCAACAGGAACTAAAAAGAATAGAGAAAGCAAAACAGAAGGTAGTTGATAAAggtaagtgaacagtaggcaagagtccttcaactctccatgaatgaaggaca Alignment from CESAR gaATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAAGTATTTGATAAAg aactattcctgagtttaggtagacctagcatcccttcctgctttctgcaggaATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAGATAAAGCAACAGGAACTAAAAAGAATAGAGAAAGCAAAACAGAAGGTAGTTGATAAAggtaagtgaacagtaggcaagagtccttcaactctccatgaatgaaggaca Alignment from Spaln_aa2Genome GAATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAAGTATTTGATAAAG aactattcctgagtttaggtagacctagcatcccttcctgctttctgcagGAATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAGATAAAGCAACAGGAACTAAAAAGAATAGAGAAAGCAAAACAGAAGGTAGTTGATAAAGgtaagtgaacagtaggcaagagtccttcaactctccatgaatgaaggaca Alignment from Spaln_nt2Genome GAATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAAGTATTTGATAAAG aactattcctgagtttaggtagacctagcatcccttcctgctttctgcagGAATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAGATAAAGCAACAGGAACTAAAAAGAATAGAGAAAGCAAAACAGAAGGTAGTTGATAAAGgtaagtgaacagtaggcaagagtccttcaactctccatgaatgaaggaca Alignment from Pairagon GAATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAAGTATTTGATAAAG aactattcctgagtttaggtagacctagcatcccttcctgctttctgcagGAATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAGATAAAGCAACAGGAACTAAAAAGAATAGAGAAAGCAAAACAGAAGGTAGTTGATAAAGgtaagtgaacagtaggcaagagtccttcaactctccatgaatgaaggaca Alignment from Exonerate_protein2genome GAATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAAGTATTTGATAAAG aactattcctgagtttaggtagacctagcatcccttcctgctttctgcagGAATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAGATAAAGCAACAGGAACTAAAAAGAATAGAGAAAGCAAAACAGAAGGTAGTTGATAAAGgtaagtgaacagtaggcaagagtccttcaactctccatgaatgaaggaca Alignment from Exonerate_coding2genome GAATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAAGTATTTGATAAAG aactattcctgagtttaggtagacctagcatcccttcctgctttctgcagGAATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAGATAAAGCAACAGGAACTAAAAAGAATAGAGAAAGCAAAACAGAAGGTAGTTGATAAAGgtaagtgaacagtaggcaagagtccttcaactctccatgaatgaaggaca Alignment from GeneWise GAATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAAGTATTTGATAAAG aactattcctgagtttaggtagacctagcatcccttcctgctttctgcagGAATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAGATAAAGCAACAGGAACTAAAAAGAATAGAGAAAGCAAAACAGAAGGTAGTTGATAAAGgtaagtgaacagtaggcaagagtccttcaactctccatgaatgaaggaca #### Vps13a_ID4119_4 --> 2 - 1 Original Alignment gtAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTa tgagtccctactccctgcataaaaaccccgcttcttgctttgcattgcaggtAGCCTTAAACTTAAAATCCCATGGAAAAACCTTTATACTCAACCTGTTGGAGCAGTTCTGGAAGAAATCTTTTTACTCATAGTACCTTCTTCTagtaaatcacttaaagtaggtcatatagctttttcccaggtgtaaagcctg Alignment from CESAR gtAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTa tgagtccctactccctgcataaaaaccccgcttcttgctttgcattgcaggtAGCCTTAAACTTAAAATCCCATGGAAAAACCTTTATACTCAACCTGTTGGAGCAGTTCTGGAAGAAATCTTTTTACTCATAGTACCTTCTTCTagtaaatcacttaaagtaggtcatatagctttttcccaggtgtaaagcctg Alignment from Spaln_aa2Genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tgagtccctactccctgcataaaaaccccgcttcttgctttgcattgcagGTAGCCTTAAACTTAAAATCCCATGGAAAAACCTTTATACTCAACCTGTTGGAGCAGTTCTGGAAGAAATCTTTTTACTCATAGTACCTTCTTCTAgtaaatcacttaaagtaggtcatatagctttttcccaggtgtaaagcctg Alignment from Spaln_nt2Genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tgagtccctactccctgcataaaaaccccgcttcttgctttgcattgcagGTAGCCTTAAACTTAAAATCCCATGGAAAAACCTTTATACTCAACCTGTTGGAGCAGTTCTGGAAGAAATCTTTTTACTCATAGTACCTTCTTCTAgtaaatcacttaaagtaggtcatatagctttttcccaggtgtaaagcctg Alignment from Pairagon GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tgagtccctactccctgcataaaaaccccgcttcttgctttgcattgcagGTAGCCTTAAACTTAAAATCCCATGGAAAAACCTTTATACTCAACCTGTTGGAGCAGTTCTGGAAGAAATCTTTTTACTCATAGTACCTTCTTCTAgtaaatcacttaaagtaggtcatatagctttttcccaggtgtaaagcctg Alignment from Exonerate_protein2genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tgagtccctactccctgcataaaaaccccgcttcttgctttgcattgcagGTAGCCTTAAACTTAAAATCCCATGGAAAAACCTTTATACTCAACCTGTTGGAGCAGTTCTGGAAGAAATCTTTTTACTCATAGTACCTTCTTCTAgtaaatcacttaaagtaggtcatatagctttttcccaggtgtaaagcctg Alignment from Exonerate_coding2genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tgagtccctactccctgcataaaaaccccgcttcttgctttgcattgcagGTAGCCTTAAACTTAAAATCCCATGGAAAAACCTTTATACTCAACCTGTTGGAGCAGTTCTGGAAGAAATCTTTTTACTCATAGTACCTTCTTCTAgtaaatcacttaaagtaggtcatatagctttttcccaggtgtaaagcctg Alignment from GeneWise TCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tgagtccctactccctgcataaaaaccccgcttcttgctttgcattgcaggtagCCTTAAACTTAAAATCCCATGGAAAAACCTTTATACTCAACCTGTTGGAGCAGTTCTGGAAGAAATCTTTTTACTCATAGTACCTTCTTCTAgtaaatcacttaaagtaggtcatatagctttttcccaggtgtaaagcctg #### Vti1a_ID11634_3 --> 0 - 0 Original Alignment CTTGAACAGATGGATTTGGAAGTTCGAGAAATTCCACCCCAAAGTCGAGGAATGTATAGCAACAGGATGAGAAGCTACAAGCAAGAAATGGGGAAACTGGAAACGGATTTT ggtaatgcagctgattacaggaaaaatggactatgtccttcccatctcagCTTGAACCAATGGATTTGGAAGTTCGAGAAATTCCACCCCAAAGTCAAGGAATGTATAGCAACAGGATGAGAAGCTACAAGCAAGAAATGGGGAAACTACAAACAGATTTTgtaaagtcatccaatcatacctaaaatgtatgttgatatggtttggtgaa Alignment from CESAR CTTGAACAGATGGATTTGGAAGTTCGAGAAATTCCACCCCAAAGTCGAGGAATGTATAGCAACAGGATGAGAAGCTACAAGCAAGAAATGGGGAAACTGGAAACGGATTTT ggtaatgcagctgattacaggaaaaatggactatgtccttcccatctcagCTTGAACCAATGGATTTGGAAGTTCGAGAAATTCCACCCCAAAGTCAAGGAATGTATAGCAACAGGATGAGAAGCTACAAGCAAGAAATGGGGAAACTACAAACAGATTTTgtaaagtcatccaatcatacctaaaatgtatgttgatatggtttggtgaa Alignment from Spaln_aa2Genome CTTGAACAGATGGATTTGGAAGTTCGAGAAATTCCACCCCAAAGTCGAGGAATGTATAGCAACAGGATGAGAAGCTACAAGCAAGAAATGGGGAAACTGGAAACGGATTTT ggtaatgcagctgattacaggaaaaatggactatgtccttcccatctcagCTTGAACCAATGGATTTGGAAGTTCGAGAAATTCCACCCCAAAGTCAAGGAATGTATAGCAACAGGATGAGAAGCTACAAGCAAGAAATGGGGAAACTACAAACAGATTTTgtaaagtcatccaatcatacctaaaatgtatgttgatatggtttggtgaa Alignment from Spaln_nt2Genome CTTGAACAGATGGATTTGGAAGTTCGAGAAATTCCACCCCAAAGTCGAGGAATGTATAGCAACAGGATGAGAAGCTACAAGCAAGAAATGGGGAAACTGGAAACGGATTTT ggtaatgcagctgattacaggaaaaatggactatgtccttcccatctcagCTTGAACCAATGGATTTGGAAGTTCGAGAAATTCCACCCCAAAGTCAAGGAATGTATAGCAACAGGATGAGAAGCTACAAGCAAGAAATGGGGAAACTACAAACAGATTTTgtaaagtcatccaatcatacctaaaatgtatgttgatatggtttggtgaa Alignment from Pairagon CTTGAACAGATGGATTTGGAAGTTCGAGAAATTCCACCCCAAAGTCGAGGAATGTATAGCAACAGGATGAGAAGCTACAAGCAAGAAATGGGGAAACTGGAAACGGATTTT ggtaatgcagctgattacaggaaaaatggactatgtccttcccatctcagCTTGAACCAATGGATTTGGAAGTTCGAGAAATTCCACCCCAAAGTCAAGGAATGTATAGCAACAGGATGAGAAGCTACAAGCAAGAAATGGGGAAACTACAAACAGATTTTgtaaagtcatccaatcatacctaaaatgtatgttgatatggtttggtgaa Alignment from Exonerate_protein2genome CTTGAACAGATGGATTTGGAAGTTCGAGAAATTCCACCCCAAAGTCGAGGAATGTATAGCAACAGGATGAGAAGCTACAAGCAAGAAATGGGGAAACTGGAAACGGATTTT ggtaatgcagctgattacaggaaaaatggactatgtccttcccatctcagCTTGAACCAATGGATTTGGAAGTTCGAGAAATTCCACCCCAAAGTCAAGGAATGTATAGCAACAGGATGAGAAGCTACAAGCAAGAAATGGGGAAACTACAAACAGATTTTgtaaagtcatccaatcatacctaaaatgtatgttgatatggtttggtgaa Alignment from Exonerate_coding2genome CTTGAACAGATGGATTTGGAAGTTCGAGAAATTCCACCCCAAAGTCGAGGAATGTATAGCAACAGGATGAGAAGCTACAAGCAAGAAATGGGGAAACTGGAAACGGATTTT ggtaatgcagctgattacaggaaaaatggactatgtccttcccatctcagCTTGAACCAATGGATTTGGAAGTTCGAGAAATTCCACCCCAAAGTCAAGGAATGTATAGCAACAGGATGAGAAGCTACAAGCAAGAAATGGGGAAACTACAAACAGATTTTgtaaagtcatccaatcatacctaaaatgtatgttgatatggtttggtgaa Alignment from GeneWise CTTGAACAGATGGATTTGGAAGTTCGAGAAATTCCACCCCAAAGTCGAGGAATGTATAGCAACAGGATGAGAAGCTACAAGCAAGAAATGGGGAAACTGGAAACGGATTTT ggtaatgcagctgattacaggaaaaatggactatgtccttcccatctcagCTTGAACCAATGGATTTGGAAGTTCGAGAAATTCCACCCCAAAGTCAAGGAATGTATAGCAACAGGATGAGAAGCTACAAGCAAGAAATGGGGAAACTACAAACAGATTTTgtaaagtcatccaatcatacctaaaatgtatgttgatatggtttggtgaa #### Vti1a_ID11656_4 --> 0 - 0 Original Alignment AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG gggatatccttggccacctagtttatcatcagccctcggtcctctcccagAAAAGGTCACGGATTGCCTATAGTGACAAAGTACGGAATGAGCTCCTAGGGGACACTGGGAATTCTTCTGAGAACCAGgtaagtgctaagggaatatgttattcttgattatcctaatgatacatttc Alignment from CESAR AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG gggatatccttggccacctagtttatcatcagccctcggtcctctcccagAAAAGGTCACGGATTGCCTATAGTGACAAAGTACGGAATGAGCTCCTAGGGGACACTGGGAATTCTTCTGAGAACCAGgtaagtgctaagggaatatgttattcttgattatcctaatgatacatttc Alignment from Spaln_aa2Genome AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG gggatatccttggccacctagtttatcatcagccctcggtcctctcccagAAAAGGTCACGGATTGCCTATAGTGACAAAGTACGGAATGAGCTCCTAGGGGACACTGGGAATTCTTCTGAGAACCAGgtaagtgctaagggaatatgttattcttgattatcctaatgatacatttc Alignment from Spaln_nt2Genome AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG gggatatccttggccacctagtttatcatcagccctcggtcctctcccagAAAAGGTCACGGATTGCCTATAGTGACAAAGTACGGAATGAGCTCCTAGGGGACACTGGGAATTCTTCTGAGAACCAGgtaagtgctaagggaatatgttattcttgattatcctaatgatacatttc Alignment from Pairagon AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG gggatatccttggccacctagtttatcatcagccctcggtcctctcccagAAAAGGTCACGGATTGCCTATAGTGACAAAGTACGGAATGAGCTCCTAGGGGACACTGGGAATTCTTCTGAGAACCAGgtaagtgctaagggaatatgttattcttgattatcctaatgatacatttc Alignment from Exonerate_protein2genome AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG gggatatccttggccacctagtttatcatcagccctcggtcctctcccagAAAAGGTCACGGATTGCCTATAGTGACAAAGTACGGAATGAGCTCCTAGGGGACACTGGGAATTCTTCTGAGAACCAGgtaagtgctaagggaatatgttattcttgattatcctaatgatacatttc Alignment from Exonerate_coding2genome AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG gggatatccttggccacctagtttatcatcagccctcggtcctctcccagAAAAGGTCACGGATTGCCTATAGTGACAAAGTACGGAATGAGCTCCTAGGGGACACTGGGAATTCTTCTGAGAACCAGgtaagtgctaagggaatatgttattcttgattatcctaatgatacatttc Alignment from GeneWise AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG gggatatccttggccacctagtttatcatcagccctcggtcctctcccagAAAAGGTCACGGATTGCCTATAGTGACAAAGTACGGAATGAGCTCCTAGGGGACACTGGGAATTCTTCTGAGAACCAGgtaagtgctaagggaatatgttattcttgattatcctaatgatacatttc #### Vti1a_ID11708_6 --> 2 - 0 Original Alignment agCAAATCGGCCAAGAGATGTTGGAAAACCTGAGTCATGACAGAGAAAAGATACAGCGGGCACGTGACCGA aatattccccaaaataggatttacttaacaaccataagtctccctttcagagCAAATTGGTCAAGAGATGTTAGAAAACTTAAGCCATGATCGAGAAATGATACAGCGGGCACGGGACAGGgtaaatagatattgtccacctttccatttcccttgcatgttcacaagtag Alignment from CESAR agCAAATCGGCCAAGAGATGTTGGAAAACCTGAGTCATGACAGAGAAAAGATACAGCGGGCACGTGACCGA aatattccccaaaataggatttacttaacaaccataagtctccctttcagagCAAATTGGTCAAGAGATGTTAGAAAACTTAAGCCATGATCGAGAAATGATACAGCGGGCACGGGACAGGgtaaatagatattgtccacctttccatttcccttgcatgttcacaagtag Alignment from Spaln_aa2Genome AGCAAATCGGCCAAGAGATGTTGGAAAACCTGAGTCATGACAGAGAAAAGATACAGCGGGCACGTGACCGA aatattccccaaaataggatttacttaacaaccataagtctccctttcagAGCAAATTGGTCAAGAGATGTTAGAAAACTTAAGCCATGATCGAGAAATGATACAGCGGGCACGGGACAGGgtaaatagatattgtccacctttccatttcccttgcatgttcacaagtag Alignment from Spaln_nt2Genome AGCAAATCGGCCAAGAGATGTTGGAAAACCTGAGTCATGACAGAGAAAAGATACAGCGGGCACGTGACCGA aatattccccaaaataggatttacttaacaaccataagtctccctttcagAGCAAATTGGTCAAGAGATGTTAGAAAACTTAAGCCATGATCGAGAAATGATACAGCGGGCACGGGACAGGgtaaatagatattgtccacctttccatttcccttgcatgttcacaagtag Alignment from Pairagon AGCAAATCGGCCAAGAGATGTTGGAAAACCTGAGTCATGACAGAGAAAAGATACAGCGGGCACGTGACCGA aatattccccaaaataggatttacttaacaaccataagtctccctttcagAGCAAATTGGTCAAGAGATGTTAGAAAACTTAAGCCATGATCGAGAAATGATACAGCGGGCACGGGACAGGgtaaatagatattgtccacctttccatttcccttgcatgttcacaagtag Alignment from Exonerate_protein2genome AGCAAATCGGCCAAGAGATGTTGGAAAACCTGAGTCATGACAGAGAAAAGATACAGCGGGCACGTGACCGA aatattccccaaaataggatttacttaacaaccataagtctccctttcagAGCAAATTGGTCAAGAGATGTTAGAAAACTTAAGCCATGATCGAGAAATGATACAGCGGGCACGGGACAGGgtaaatagatattgtccacctttccatttcccttgcatgttcacaagtag Alignment from Exonerate_coding2genome AGCAAATCGGCCAAGAGATGTTGGAAAACCTGAGTCATGACAGAGAAAAGATACAGCGGGCACGTGACCGA aatattccccaaaataggatttacttaacaaccataagtctccctttcagAGCAAATTGGTCAAGAGATGTTAGAAAACTTAAGCCATGATCGAGAAATGATACAGCGGGCACGGGACAGGgtaaatagatattgtccacctttccatttcccttgcatgttcacaagtag Alignment from GeneWise AGCAAATCGGCCAAGAGATGTTGGAAAACCTGAGTCATGACAGAGAAAAGATACAGCGGGCACGTGACCGA aatattccccaaaataggatttacttaacaaccataagtctccctttcagAGCAAATTGGTCAAGAGATGTTAGAAAACTTAAGCCATGATCGAGAAATGATACAGCGGGCACGGGACAGGgtaaatagatattgtccacctttccatttcccttgcatgttcacaagtag #### Vti1a_ID11709_7 --> 0 - 2 Original Alignment CTCCGGGACGCAGATGCAAACCTGGGGAAGAGCTCTCGGATTCTGACGGGGATGCTGCGAag ggatgagctgagttcatgtaaatcagatgtgaacctgggttctcctgcagCTCCGGGACGCAGATGCAAACCTTGGGAAGAGCTCTCGGATTCTTGCAGGGATGTTAAGGcggtgggcgatacatgcccaccaatttatgcaatctcaatatccatggttgc Alignment from CESAR CTCCGGGACGCAGATGCAAACCTGGGGAAGAGCTCTCGGATTCTGACGGGGATGCTGCGAag ggatgagctgagttcatgtaaatcagatgtgaacctgggttctcctgcagCTCCGGGACGCAGATGCAAACCTTGGGAAGAGCTCTCGGATTCTTGCAGGGATGTTAAGGcggtgggcgatacatgcccaccaatttatgcaatctcaatatccatggttgc Alignment from Spaln_aa2Genome CTCCGGGACGCAGATGCAAACCTGGGGAAGAGCTCTCGGATTCTGACGGGGATGCTGCGAAG ggatgagctgagttcatgtaaatcagatgtgaacctgggttctcctgcagCTCCGGGACGCAGATGCAAACCTTGGGAAGAGCTCTCGGATTCTTGCAGGGATGTTAAGGCGgtgggcgatacatgcccaccaatttatgcaatctcaatatccatggttgc Alignment from Spaln_nt2Genome CTCCGGGACGCAGATGCAAACCTGGGGAAGAGCTCTCGGATTCTGACGGGGATG ggatgagctgagttcatgtaaatcagatgtgaacctgggttctcctgcagCTCCGGGACGCAGATGCAAACCTTGGGAAGAGCTCTCGGATTCTTGCAGGGATGttaaggcggtgggcgatacatgcccaccaatttatgcaatctcaatatccatggttgc Alignment from Pairagon CTCCGGGACGCAGATGCAAACCTGGGGAAGAGCTCTCGGATTCTGACGGGGATGCTGCGAAG ggatgagctgagttcatgtaaatcagatgtgaacctgggttctcctgcagCTCCGGGACGCAGATGCAAACCTTGGGAAGAGCTCTCGGATTCTTGCAGGGATGTTAAGGCGgtgggcgatacatgcccaccaatttatgcaatctcaatatccatggttgc Alignment from Exonerate_protein2genome CTCCGGGACGCAGATGCAAACCTGGGGAAGAGCTCTCGGATTCTGACGGGGATGCTGCGAAG ggatgagctgagttcatgtaaatcagatgtgaacctgggttctcctgcagCTCCGGGACGCAGATGCAAACCTTGGGAAGAGCTCTCGGATTCTTGCAGGGATGTTAAGGCGgtgggcgatacatgcccaccaatttatgcaatctcaatatccatggttgc Alignment from Exonerate_coding2genome CTCCGGGACGCAGATGCAAACCTGGGGAAGAGCTCTCGGATTCTGACGGGGATGCTGCGAAGA ggatgagctgagttcatgtaaatcagatgtgaacctgggttctcctgcagCTCCGGGACGCAGATGCAAACCTTGGGAAGAGCTCTCGGATTCTTGCAGGGATGTTAAGGCGGtgggcgatacatgcccaccaatttatgcaatctcaatatccatggttgc Alignment from GeneWise CTCCGGGACGCAGATGCAAACCTGGGGAAGAGCTCTCGGATTCTGACGGGGATGCTGCGAAG ggatgagctgagttcatgtaaatcagatgtgaacctgggttctcctgcagCTCCGGGACGCAGATGCAAACCTTGGGAAGAGCTCTCGGATTCTTGCAGGGATGTTAAGGCGgtgggcgatacatgcccaccaatttatgcaatctcaatatccatggttgc #### Vwa2_ID12232_5 --> 1 - 2 Original Alignment aGGTGGG---CGCACCGAGACGGGCCTAGCCCTGAAACGCCTGAGCAGAGGGTTCCCCGGAGGCAGAAATGGCTCTGTGCCCCAGATTCTTATCATCGTCACGGATGGCAAGTCCCAGGGGCCCGTGGCTCTCCCGGCTAAGCAGCTGAGAGAAAGGGGCATCGTCGTGTTTGCCGTAGGAGTCCGTTTTCCCag ccagaaatgctaaactatgatcttatcctaatggcttcttgtgcccacagaGCTGGGCACAGCACAAAAACAGGCCTAGCCCTGAAACACCTGAGTAGAGGATTCCCTGGAGGTAGAAATGACTCTGTCCCCCAGATTCTTATTATTTTCACAGATGGTAGGGCCCAAGGGCCTGTAACCCTCCCAACTAAACAGCTAAGAGAAAGGGGCATTGTTGTGTTTACCGTAGGAGTTCGCTTCCCCaagtgagtgtatagaacaactagtctttagcagagggatcagtgcacttgtt Alignment from CESAR aGGTGGGCGC---ACCGAGACGGGCCTAGCCCTGAAACGCCTGAGCAGAGGGTTCCCCGGAGGCAGAAATGGCTCTGTGCCCCAGATTCTTATCATCGTCACGGATGGCAAGTCCCAGGGGCCCGTGGCTCTCCCGGCTAAGCAGCTGAGAGAAAGGGGCATCGTCGTGTTTGCCGTAGGAGTCCGTTTTCCCag ccagaaatgctaaactatgatcttatcctaatggcttcttgtgcccacagaGCTGGGCACAGCACAAAAACAGGCCTAGCCCTGAAACACCTGAGTAGAGGATTCCCTGGAGGTAGAAATGACTCTGTCCCCCAGATTCTTATTATTTTCACAGATGGTAGGGCCCAAGGGCCTGTAACCCTCCCAACTAAACAGCTAAGAGAAAGGGGCATTGTTGTGTTTACCGTAGGAGTTCGCTTCCCCaagtgagtgtatagaacaactagtctttagcagagggatcagtgcacttgtt Alignment from Spaln_aa2Genome AGGTGGGCGC---ACCGAGACGGGCCTAGCCCTGAAACGCCTGAGCAGAGGGTTCCCCGGAGGCAGAAATGGCTCTGTGCCCCAGATTCTTATCATCGTCACGGATGGCAAGTCCCAGGGGCCCGTGGCTCTCCCGGCTAAGCAGCTGAGAGAAAGGGGCATCGTCGTGTTTGCCGTAGGAGTCCGTTTTCCCAG ccagaaatgctaaactatgatcttatcctaatggcttcttgtgcccacagAGCTGGGCACAGCACAAAAACAGGCCTAGCCCTGAAACACCTGAGTAGAGGATTCCCTGGAGGTAGAAATGACTCTGTCCCCCAGATTCTTATTATTTTCACAGATGGTAGGGCCCAAGGGCCTGTAACCCTCCCAACTAAACAGCTAAGAGAAAGGGGCATTGTTGTGTTTACCGTAGGAGTTCGCTTCCCCAAgtgagtgtatagaacaactagtctttagcagagggatcagtgcacttgtt Alignment from Spaln_nt2Genome AGGTGGGC---GCACCGAGACGGGCCTAGCCCTGAAACGCCTGAGCAGAGGGTTCCCCGGAGGCAGAAATGGCTCTGTGCCCCAGATTCTTATCATCGTCACGGATGGCAAGTCCCAGGGGCCCGTGGCTCTCCCGGCTAAGCAGCTGAGAGAAAGGGGCATCGTCGTGTTTGCCGTAGGAGTCCGTTTTCCCAG ccagaaatgctaaactatgatcttatcctaatggcttcttgtgcccacagAGCTGGGCACAGCACAAAAACAGGCCTAGCCCTGAAACACCTGAGTAGAGGATTCCCTGGAGGTAGAAATGACTCTGTCCCCCAGATTCTTATTATTTTCACAGATGGTAGGGCCCAAGGGCCTGTAACCCTCCCAACTAAACAGCTAAGAGAAAGGGGCATTGTTGTGTTTACCGTAGGAGTTCGCTTCCCCAAgtgagtgtatagaacaactagtctttagcagagggatcagtgcacttgtt Alignment from Pairagon AGGTGGGC---GCACCGAGACGGGCCTAGCCCTGAAACGCCTGAGCAGAGGGTTCCCCGGAGGCAGAAATGGCTCTGTGCCCCAGATTCTTATCATCGTCACGGATGGCAAGTCCCAGGGGCCCGTGGCTCTCCCGGCTAAGCAGCTGAGAGAAAGGGGCATCGTCGTGTTTGCCGTAGGAGTCCGTTTTCCCAG ccagaaatgctaaactatgatcttatcctaatggcttcttgtgcccacagAGCTGGGCACAGCACAAAAACAGGCCTAGCCCTGAAACACCTGAGTAGAGGATTCCCTGGAGGTAGAAATGACTCTGTCCCCCAGATTCTTATTATTTTCACAGATGGTAGGGCCCAAGGGCCTGTAACCCTCCCAACTAAACAGCTAAGAGAAAGGGGCATTGTTGTGTTTACCGTAGGAGTTCGCTTCCCCAAgtgagtgtatagaacaactagtctttagcagagggatcagtgcacttgtt Alignment from Exonerate_protein2genome AGGTGGGCGC---ACCGAGACGGGCCTAGCCCTGAAACGCCTGAGCAGAGGGTTCCCCGGAGGCAGAAATGGCTCTGTGCCCCAGATTCTTATCATCGTCACGGATGGCAAGTCCCAGGGGCCCGTGGCTCTCCCGGCTAAGCAGCTGAGAGAAAGGGGCATCGTCGTGTTTGCCGTAGGAGTCCGTTTTCCCAG ccagaaatgctaaactatgatcttatcctaatggcttcttgtgcccacagAGCTGGGCACAGCACAAAAACAGGCCTAGCCCTGAAACACCTGAGTAGAGGATTCCCTGGAGGTAGAAATGACTCTGTCCCCCAGATTCTTATTATTTTCACAGATGGTAGGGCCCAAGGGCCTGTAACCCTCCCAACTAAACAGCTAAGAGAAAGGGGCATTGTTGTGTTTACCGTAGGAGTTCGCTTCCCCAAgtgagtgtatagaacaactagtctttagcagagggatcagtgcacttgtt Alignment from Exonerate_coding2genome AGGTGGGCGC---ACCGAGACGGGCCTAGCCCTGAAACGCCTGAGCAGAGGGTTCCCCGGAGGCAGAAATGGCTCTGTGCCCCAGATTCTTATCATCGTCACGGATGGCAAGTCCCAGGGGCCCGTGGCTCTCCCGGCTAAGCAGCTGAGAGAAAGGGGCATCGTCGTGTTTGCCGTAGGAGTCCGTTTTCCCAG ccagaaatgctaaactatgatcttatcctaatggcttcttgtgcccacagAGCTGGGCACAGCACAAAAACAGGCCTAGCCCTGAAACACCTGAGTAGAGGATTCCCTGGAGGTAGAAATGACTCTGTCCCCCAGATTCTTATTATTTTCACAGATGGTAGGGCCCAAGGGCCTGTAACCCTCCCAACTAAACAGCTAAGAGAAAGGGGCATTGTTGTGTTTACCGTAGGAGTTCGCTTCCCCAAgtgagtgtatagaacaactagtctttagcagagggatcagtgcacttgtt Alignment from GeneWise -AAAGGTGGGCGCACCGAGACGGGCCTAGCCCTGAAACGCCTGAGCAGAGGGTTCCCCGGAGGCAGAAATGGCTCTGTGCCCCAGATTCTTATCATCGTCACGGATGGCAAGTCCCAGGGGCCCGTGGCTCTCCCGGCTAAGCAGCTGAGAGAAAGGGGCATCGTCGTGTTTGCCGTAGGAGTCCGTTTTCCCAG ccagaaatgctaaactatgatcttatcctaatggcttcttgtgcccacagAGCTGGGCACAGCACAAAAACAGGCCTAGCCCTGAAACACCTGAGTAGAGGATTCCCTGGAGGTAGAAATGACTCTGTCCCCCAGATTCTTATTATTTTCACAGATGGTAGGGCCCAAGGGCCTGTAACCCTCCCAACTAAACAGCTAAGAGAAAGGGGCATTGTTGTGTTTACCGTAGGAGTTCGCTTCCCCAAgtgagtgtatagaacaactagtctttagcagagggatcagtgcacttgtt #### Vwa2_ID12235_8 --> 1 - 1 Original Alignment cTGGAAGAGAGTGTTCCAGACACACCCTGCCAACTGCTACAGAACCATCTGTCCAg aggcttaggctctggatgggatccctccgaatgtgtatatctctttctagcTGGAAGAGAGTATTCCAGACACACCCTGCCAACTGCTATAGAACCATCTGTCCAagtgagggttgctgtcccatcaggctcatttagtctagtgcaagtgagggg Alignment from CESAR cTGGAAGAGAGTGTTCCAGACACACCCTGCCAACTGCTACAGAACCATCTGTCCAg aggcttaggctctggatgggatccctccgaatgtgtatatctctttctagcTGGAAGAGAGTATTCCAGACACACCCTGCCAACTGCTATAGAACCATCTGTCCAagtgagggttgctgtcccatcaggctcatttagtctagtgcaagtgagggg Alignment from Spaln_aa2Genome CTGGAAGAGAGTGTTCCAGACACACCCTGCCAACTGCTACAGAACCATCTGTCCAG aggcttaggctctggatgggatccctccgaatgtgtatatctctttctagCTGGAAGAGAGTATTCCAGACACACCCTGCCAACTGCTATAGAACCATCTGTCCAAgtgagggttgctgtcccatcaggctcatttagtctagtgcaagtgagggg Alignment from Spaln_nt2Genome CTGGAAGAGAGTGTTCCAGACACACCCTGCCAACTGCTACAGAACCATCTGTCCAG aggcttaggctctggatgggatccctccgaatgtgtatatctctttctagCTGGAAGAGAGTATTCCAGACACACCCTGCCAACTGCTATAGAACCATCTGTCCAAgtgagggttgctgtcccatcaggctcatttagtctagtgcaagtgagggg Alignment from Pairagon CTGGAAGAGAGTGTTCCAGACACACCCTGCCAACTGCTACAGAACCATCTGTCCAG aggcttaggctctggatgggatccctccgaatgtgtatatctctttctagCTGGAAGAGAGTATTCCAGACACACCCTGCCAACTGCTATAGAACCATCTGTCCAAgtgagggttgctgtcccatcaggctcatttagtctagtgcaagtgagggg Alignment from Exonerate_protein2genome CTGGAAGAGAGTGTTCCAGACACACCCTGCCAACTGCTACAGAACCATCTGTCCAG aggcttaggctctggatgggatccctccgaatgtgtatatctctttctagCTGGAAGAGAGTATTCCAGACACACCCTGCCAACTGCTATAGAACCATCTGTCCAAgtgagggttgctgtcccatcaggctcatttagtctagtgcaagtgagggg Alignment from Exonerate_coding2genome CTGGAAGAGAGTGTTCCAGACACACCCTGCCAACTGCTACAGAACCATCTGTCCAG aggcttaggctctggatgggatccctccgaatgtgtatatctctttctagCTGGAAGAGAGTATTCCAGACACACCCTGCCAACTGCTATAGAACCATCTGTCCAAgtgagggttgctgtcccatcaggctcatttagtctagtgcaagtgagggg Alignment from GeneWise CTGGAAGAGAGTGTTCCAGACACACCCTGCCAACTGCTACAGAACCATCTGTCCAG aggcttaggctctggatgggatccctccgaatgtgtatatctctttctagCTGGAAGAGAGTATTCCAGACACACCCTGCCAACTGCTATAGAACCATCTGTCCAAgtgagggttgctgtcccatcaggctcatttagtctagtgcaagtgagggg #### Vwa2_ID12236_9 --> 2 - 1 Original Alignment gcCCCTGTGACTCCCAGCCCTGCCAAAATGGAGGCACGTGCATTCCAGAAGGTGTGGATAGGTACCACTGTCTCTGCCCACTGGCATTCGGAGGGGAAGTCAACTGTg agcttaaagagcttacttactaaatggagtttcacatgctttccttgtaggtCCCTGTGATACCCAGCCATGTCAAAATGGAGGCACATGCATACCAGAAGGGGTGGATCGATACCATTGTCTTTGCCCATTAGCCTTTGGAGGTGAAGTGAACTGTggtgagcactaaggacaggccaagattgtattccacttgttgtcccttgct Alignment from CESAR gcCCCTGTGACTCCCAGCCCTGCCAAAATGGAGGCACGTGCATTCCAGAAGGTGTGGATAGGTACCACTGTCTCTGCCCACTGGCATTCGGAGGGGAAGTCAACTGTg agcttaaagagcttacttactaaatggagtttcacatgctttccttgtaggtCCCTGTGATACCCAGCCATGTCAAAATGGAGGCACATGCATACCAGAAGGGGTGGATCGATACCATTGTCTTTGCCCATTAGCCTTTGGAGGTGAAGTGAACTGTggtgagcactaaggacaggccaagattgtattccacttgttgtcccttgct Alignment from Spaln_aa2Genome GCCCCTGTGACTCCCAGCCCTGCCAAAATGGAGGCACGTGCATTCCAGAAGGTGTGGATAGGTACCACTGTCTCTGCCCACTGGCATTCGGAGGGGAAGTCAACTGTG agcttaaagagcttacttactaaatggagtttcacatgctttccttgtagGTCCCTGTGATACCCAGCCATGTCAAAATGGAGGCACATGCATACCAGAAGGGGTGGATCGATACCATTGTCTTTGCCCATTAGCCTTTGGAGGTGAAGTGAACTGTGgtgagcactaaggacaggccaagattgtattccacttgttgtcccttgct Alignment from Spaln_nt2Genome GCCCCTGTGACTCCCAGCCCTGCCAAAATGGAGGCACGTGCATTCCAGAAGGTGTGGATAGGTACCACTGTCTCTGCCCACTGGCATTCGGAGGGGAAGTCAACTGTG agcttaaagagcttacttactaaatggagtttcacatgctttccttgtagGTCCCTGTGATACCCAGCCATGTCAAAATGGAGGCACATGCATACCAGAAGGGGTGGATCGATACCATTGTCTTTGCCCATTAGCCTTTGGAGGTGAAGTGAACTGTGgtgagcactaaggacaggccaagattgtattccacttgttgtcccttgct Alignment from Pairagon GCCCCTGTGACTCCCAGCCCTGCCAAAATGGAGGCACGTGCATTCCAGAAGGTGTGGATAGGTACCACTGTCTCTGCCCACTGGCATTCGGAGGGGAAGTCAACTGTG agcttaaagagcttacttactaaatggagtttcacatgctttccttgtagGTCCCTGTGATACCCAGCCATGTCAAAATGGAGGCACATGCATACCAGAAGGGGTGGATCGATACCATTGTCTTTGCCCATTAGCCTTTGGAGGTGAAGTGAACTGTGgtgagcactaaggacaggccaagattgtattccacttgttgtcccttgct Alignment from Exonerate_protein2genome GCCCCTGTGACTCCCAGCCCTGCCAAAATGGAGGCACGTGCATTCCAGAAGGTGTGGATAGGTACCACTGTCTCTGCCCACTGGCATTCGGAGGGGAAGTCAACTGTG agcttaaagagcttacttactaaatggagtttcacatgctttccttgtagGTCCCTGTGATACCCAGCCATGTCAAAATGGAGGCACATGCATACCAGAAGGGGTGGATCGATACCATTGTCTTTGCCCATTAGCCTTTGGAGGTGAAGTGAACTGTGgtgagcactaaggacaggccaagattgtattccacttgttgtcccttgct Alignment from Exonerate_coding2genome GCCCCTGTGACTCCCAGCCCTGCCAAAATGGAGGCACGTGCATTCCAGAAGGTGTGGATAGGTACCACTGTCTCTGCCCACTGGCATTCGGAGGGGAAGTCAACTGTG agcttaaagagcttacttactaaatggagtttcacatgctttccttgtagGTCCCTGTGATACCCAGCCATGTCAAAATGGAGGCACATGCATACCAGAAGGGGTGGATCGATACCATTGTCTTTGCCCATTAGCCTTTGGAGGTGAAGTGAACTGTGgtgagcactaaggacaggccaagattgtattccacttgttgtcccttgct Alignment from GeneWise GCCCCTGTGACTCCCAGCCCTGCCAAAATGGAGGCACGTGCATTCCAGAAGGTGTGGATAGGTACCACTGTCTCTGCCCACTGGCATTCGGAGGGGAAGTCAACTGTG agcttaaagagcttacttactaaatggagtttcacatgctttccttgtagGTCCCTGTGATACCCAGCCATGTCAAAATGGAGGCACATGCATACCAGAAGGGGTGGATCGATACCATTGTCTTTGCCCATTAGCCTTTGGAGGTGAAGTGAACTGTGgtgagcactaaggacaggccaagattgtattccacttgttgtcccttgct #### Vwa2_ID12239_12 --> 2 - 1 Original Alignment aaGCCAGGCTGCCAGTCAACCTCTGCAAGCCGAGCCCATGCATGAATGAAGGCACCTGTGTCCTGAAGAACGGCAGTTACCGATGCGAGTGCCGGGGTGGCTGGGAAGGCCCCCACTGTGAGAACc ctcactccctgtaatatcaaatcatgtgtactattggtgtgcctcctcagaaGCCAGGCCGCCTGTCAACCTATGTAAGCCAAGCCCATGCATGAATGAAGGCACCTGTGTACTGAAGAATGGTAGCTATCGGTGTGAGGGCCAAGGTGGTTGGGAAGGCCCTCACTGCGAGAACcgtaatggatgtgagcccagatggtggtgtccttcttaagtgtggaagtat Alignment from CESAR aaGCCAGGCTGCCAGTCAACCTCTGCAAGCCGAGCCCATGCATGAATGAAGGCACCTGTGTCCTGAAGAACGGCAGTTACCGATGCGAGTGCCGGGGTGGCTGGGAAGGCCCCCACTGTGAGAACc ctcactccctgtaatatcaaatcatgtgtactattggtgtgcctcctcagaaGCCAGGCCGCCTGTCAACCTATGTAAGCCAAGCCCATGCATGAATGAAGGCACCTGTGTACTGAAGAATGGTAGCTATCGGTGTGAGGGCCAAGGTGGTTGGGAAGGCCCTCACTGCGAGAACcgtaatggatgtgagcccagatggtggtgtccttcttaagtgtggaagtat Alignment from Spaln_aa2Genome AAGCCAGGCTGCCAGTCAACCTCTGCAAGCCGAGCCCATGCATGAATGAAGGCACCTGTGTCCTGAAGAACGGCAGTTACCGATGCGAGTGCCGGGGTGGCTGGGAAGGCCCCCACTGTGAGAACC ctcactccctgtaatatcaaatcatgtgtactattggtgtgcctcctcagAAGCCAGGCCGCCTGTCAACCTATGTAAGCCAAGCCCATGCATGAATGAAGGCACCTGTGTACTGAAGAATGGTAGCTATCGGTGTGAGGGCCAAGGTGGTTGGGAAGGCCCTCACTGCGAGAACCgtaatggatgtgagcccagatggtggtgtccttcttaagtgtggaagtat Alignment from Spaln_nt2Genome AAGCCAGGCTGCCAGTCAACCTCTGCAAGCCGAGCCCATGCATGAATGAAGGCACCTGTGTCCTGAAGAACGGCAGTTACCGATGCGAGTGCCGGGGTGGCTGGGAAGGCCCCCACTGTGAGAACC ctcactccctgtaatatcaaatcatgtgtactattggtgtgcctcctcagAAGCCAGGCCGCCTGTCAACCTATGTAAGCCAAGCCCATGCATGAATGAAGGCACCTGTGTACTGAAGAATGGTAGCTATCGGTGTGAGGGCCAAGGTGGTTGGGAAGGCCCTCACTGCGAGAACCgtaatggatgtgagcccagatggtggtgtccttcttaagtgtggaagtat Alignment from Pairagon AAGCCAGGCTGCCAGTCAACCTCTGCAAGCCGAGCCCATGCATGAATGAAGGCACCTGTGTCCTGAAGAACGGCAGTTACCGATGCGAGTGCCGGGGTGGCTGGGAAGGCCCCCACTGTGAGAACC ctcactccctgtaatatcaaatcatgtgtactattggtgtgcctcctcagAAGCCAGGCCGCCTGTCAACCTATGTAAGCCAAGCCCATGCATGAATGAAGGCACCTGTGTACTGAAGAATGGTAGCTATCGGTGTGAGGGCCAAGGTGGTTGGGAAGGCCCTCACTGCGAGAACCgtaatggatgtgagcccagatggtggtgtccttcttaagtgtggaagtat Alignment from Exonerate_protein2genome AAGCCAGGCTGCCAGTCAACCTCTGCAAGCCGAGCCCATGCATGAATGAAGGCACCTGTGTCCTGAAGAACGGCAGTTACCGATGCGAGTGCCGGGGTGGCTGGGAAGGCCCCCACTGTGAGAACC ctcactccctgtaatatcaaatcatgtgtactattggtgtgcctcctcagAAGCCAGGCCGCCTGTCAACCTATGTAAGCCAAGCCCATGCATGAATGAAGGCACCTGTGTACTGAAGAATGGTAGCTATCGGTGTGAGGGCCAAGGTGGTTGGGAAGGCCCTCACTGCGAGAACCgtaatggatgtgagcccagatggtggtgtccttcttaagtgtggaagtat Alignment from Exonerate_coding2genome AAGCCAGGCTGCCAGTCAACCTCTGCAAGCCGAGCCCATGCATGAATGAAGGCACCTGTGTCCTGAAGAACGGCAGTTACCGATGCGAGTGCCGGGGTGGCTGGGAAGGCCCCCACTGTGAGAACC ctcactccctgtaatatcaaatcatgtgtactattggtgtgcctcctcagAAGCCAGGCCGCCTGTCAACCTATGTAAGCCAAGCCCATGCATGAATGAAGGCACCTGTGTACTGAAGAATGGTAGCTATCGGTGTGAGGGCCAAGGTGGTTGGGAAGGCCCTCACTGCGAGAACCgtaatggatgtgagcccagatggtggtgtccttcttaagtgtggaagtat Alignment from GeneWise AAGCCAGGCTGCCAGTCAACCTCTGCAAGCCGAGCCCATGCATGAATGAAGGCACCTGTGTCCTGAAGAACGGCAGTTACCGATGCGAGTGCCGGGGTGGCTGGGAAGGCCCCCACTGTGAGAACC ctcactccctgtaatatcaaatcatgtgtactattggtgtgcctcctcagAAGCCAGGCCGCCTGTCAACCTATGTAAGCCAAGCCCATGCATGAATGAAGGCACCTGTGTACTGAAGAATGGTAGCTATCGGTGTGAGGGCCAAGGTGGTTGGGAAGGCCCTCACTGCGAGAACCgtaatggatgtgagcccagatggtggtgtccttcttaagtgtggaagtat #### Vwce_ID2951_6 --> 2 - 1 Original Alignment acACTGACGAGTGCCTGGGAACACCCTGCCAGCAGAGATGTAAGAACAGCATTGGTAGCTATAAGTGCTCCTGCCGCGCTGGCTTCCACCTCCACGGCAACCGACACTCCTGTATAg tgccacctgaggcagcttcatctaattggtttgcccttctaaccatttagacTCTGATGAGTGCCTGGGAACACCCTGCCAGCAGAGATGTAAGAACAGTATTGGTAGCTACAAATGCTCCTGTTGTGCAGGCTTCCATGTCCACAGCAACCGACACTCCTGTATAggtaagttcatggatctctagttggaatattaaggacatggcagagcaatg Alignment from CESAR acACTGACGAGTGCCTGGGAACACCCTGCCAGCAGAGATGTAAGAACAGCATTGGTAGCTATAAGTGCTCCTGCCGCGCTGGCTTCCACCTCCACGGCAACCGACACTCCTGTATAg tgccacctgaggcagcttcatctaattggtttgcccttctaaccatttagacTCTGATGAGTGCCTGGGAACACCCTGCCAGCAGAGATGTAAGAACAGTATTGGTAGCTACAAATGCTCCTGTTGTGCAGGCTTCCATGTCCACAGCAACCGACACTCCTGTATAggtaagttcatggatctctagttggaatattaaggacatggcagagcaatg Alignment from Spaln_aa2Genome ACACTGACGAGTGCCTGGGAACACCCTGCCAGCAGAGATGTAAGAACAGCATTGGTAGCTATAAGTGCTCCTGCCGCGCTGGCTTCCACCTCCACGGCAACCGACACTCCTGTATAG tgccacctgaggcagcttcatctaattggtttgcccttctaaccatttagACTCTGATGAGTGCCTGGGAACACCCTGCCAGCAGAGATGTAAGAACAGTATTGGTAGCTACAAATGCTCCTGTTGTGCAGGCTTCCATGTCCACAGCAACCGACACTCCTGTATAGgtaagttcatggatctctagttggaatattaaggacatggcagagcaatg Alignment from Spaln_nt2Genome ACACTGACGAGTGCCTGGGAACACCCTGCCAGCAGAGATGTAAGAACAGCATTGGTAGCTATAAGTGCTCCTGCCGCGCTGGCTTCCACCTCCACGGCAACCGACACTCCTGTATAG tgccacctgaggcagcttcatctaattggtttgcccttctaaccatttagACTCTGATGAGTGCCTGGGAACACCCTGCCAGCAGAGATGTAAGAACAGTATTGGTAGCTACAAATGCTCCTGTTGTGCAGGCTTCCATGTCCACAGCAACCGACACTCCTGTATAGgtaagttcatggatctctagttggaatattaaggacatggcagagcaatg Alignment from Pairagon ACACTGACGAGTGCCTGGGAACACCCTGCCAGCAGAGATGTAAGAACAGCATTGGTAGCTATAAGTGCTCCTGCCGCGCTGGCTTCCACCTCCACGGCAACCGACACTCCTGTATAG tgccacctgaggcagcttcatctaattggtttgcccttctaaccatttagACTCTGATGAGTGCCTGGGAACACCCTGCCAGCAGAGATGTAAGAACAGTATTGGTAGCTACAAATGCTCCTGTTGTGCAGGCTTCCATGTCCACAGCAACCGACACTCCTGTATAGgtaagttcatggatctctagttggaatattaaggacatggcagagcaatg Alignment from Exonerate_protein2genome ACACTGACGAGTGCCTGGGAACACCCTGCCAGCAGAGATGTAAGAACAGCATTGGTAGCTATAAGTGCTCCTGCCGCGCTGGCTTCCACCTCCACGGCAACCGACACTCCTGTATAG tgccacctgaggcagcttcatctaattggtttgcccttctaaccatttagACTCTGATGAGTGCCTGGGAACACCCTGCCAGCAGAGATGTAAGAACAGTATTGGTAGCTACAAATGCTCCTGTTGTGCAGGCTTCCATGTCCACAGCAACCGACACTCCTGTATAGgtaagttcatggatctctagttggaatattaaggacatggcagagcaatg Alignment from Exonerate_coding2genome ACACTGACGAGTGCCTGGGAACACCCTGCCAGCAGAGATGTAAGAACAGCATTGGTAGCTATAAGTGCTCCTGCCGCGCTGGCTTCCACCTCCACGGCAACCGACACTCCTGTATAG tgccacctgaggcagcttcatctaattggtttgcccttctaaccatttagACTCTGATGAGTGCCTGGGAACACCCTGCCAGCAGAGATGTAAGAACAGTATTGGTAGCTACAAATGCTCCTGTTGTGCAGGCTTCCATGTCCACAGCAACCGACACTCCTGTATAGgtaagttcatggatctctagttggaatattaaggacatggcagagcaatg Alignment from GeneWise ACACTGACGAGTGCCTGGGAACACCCTGCCAGCAGAGATGTAAGAACAGCATTGGTAGCTATAAGTGCTCCTGCCGCGCTGGCTTCCACCTCCACGGCAACCGACACTCCTGTATAG tgccacctgaggcagcttcatctaattggtttgcccttctaaccatttagACTCTGATGAGTGCCTGGGAACACCCTGCCAGCAGAGATGTAAGAACAGTATTGGTAGCTACAAATGCTCCTGTTGTGCAGGCTTCCATGTCCACAGCAACCGACACTCCTGTATAGgtaagttcatggatctctagttggaatattaaggacatggcagagcaatg #### Vwce_ID2952_7 --> 2 - 1 Original Alignment atGTCAACGAGTGTCGGCGGCCACAAGAGAGGAGAGTCTGTCACCACACCTGCCACAACACTGTGGGCAGCTTCCTGTGCACCTGTAGACCTGGTTTCAGGCTTCGATCTGACCGTGTGTCCTGTGAAg ggaaagggggaagaaaagggccaatgttccatatgccctgtctgttgcagatATCAACAAGTGTCGGCCACCACAAGAGAAGAGAGTCTGTCATCACACCTGCCACAATGCCGTGGGTAGCTTCCTCTGTACCTGTAGACCTGGTTTTAGACTGCGATCTGATCGGGATTCCTGTGAAggtaggtaggagcttctcggacaactatagctctagtcctgttatctgaag Alignment from CESAR atGTCAACGAGTGTCGGCGGCCACAAGAGAGGAGAGTCTGTCACCACACCTGCCACAACACTGTGGGCAGCTTCCTGTGCACCTGTAGACCTGGTTTCAGGCTTCGATCTGACCGTGTGTCCTGTGAAg ggaaagggggaagaaaagggccaatgttccatatgccctgtctgttgcagatATCAACAAGTGTCGGCCACCACAAGAGAAGAGAGTCTGTCATCACACCTGCCACAATGCCGTGGGTAGCTTCCTCTGTACCTGTAGACCTGGTTTTAGACTGCGATCTGATCGGGATTCCTGTGAAggtaggtaggagcttctcggacaactatagctctagtcctgttatctgaag Alignment from Spaln_aa2Genome ATGTCAACGAGTGTCGGCGGCCACAAGAGAGGAGAGTCTGTCACCACACCTGCCACAACACTGTGGGCAGCTTCCTGTGCACCTGTAGACCTGGTTTCAGGCTTCGATCTGACCGTGTGTCCTGTGAAG ggaaagggggaagaaaagggccaatgttccatatgccctgtctgttgcagATATCAACAAGTGTCGGCCACCACAAGAGAAGAGAGTCTGTCATCACACCTGCCACAATGCCGTGGGTAGCTTCCTCTGTACCTGTAGACCTGGTTTTAGACTGCGATCTGATCGGGATTCCTGTGAAGgtaggtaggagcttctcggacaactatagctctagtcctgttatctgaag Alignment from Spaln_nt2Genome ATGTCAACGAGTGTCGGCGGCCACAAGAGAGGAGAGTCTGTCACCACACCTGCCACAACACTGTGGGCAGCTTCCTGTGCACCTGTAGACCTGGTTTCAGGCTTCGATCTGACCGTGTGTCCTGTGAAG ggaaagggggaagaaaagggccaatgttccatatgccctgtctgttgcagATATCAACAAGTGTCGGCCACCACAAGAGAAGAGAGTCTGTCATCACACCTGCCACAATGCCGTGGGTAGCTTCCTCTGTACCTGTAGACCTGGTTTTAGACTGCGATCTGATCGGGATTCCTGTGAAGgtaggtaggagcttctcggacaactatagctctagtcctgttatctgaag Alignment from Pairagon ATGTCAACGAGTGTCGGCGGCCACAAGAGAGGAGAGTCTGTCACCACACCTGCCACAACACTGTGGGCAGCTTCCTGTGCACCTGTAGACCTGGTTTCAGGCTTCGATCTGACCGTGTGTCCTGTGAAG ggaaagggggaagaaaagggccaatgttccatatgccctgtctgttgcagATATCAACAAGTGTCGGCCACCACAAGAGAAGAGAGTCTGTCATCACACCTGCCACAATGCCGTGGGTAGCTTCCTCTGTACCTGTAGACCTGGTTTTAGACTGCGATCTGATCGGGATTCCTGTGAAGgtaggtaggagcttctcggacaactatagctctagtcctgttatctgaag Alignment from Exonerate_protein2genome ATGTCAACGAGTGTCGGCGGCCACAAGAGAGGAGAGTCTGTCACCACACCTGCCACAACACTGTGGGCAGCTTCCTGTGCACCTGTAGACCTGGTTTCAGGCTTCGATCTGACCGTGTGTCCTGTGAAG ggaaagggggaagaaaagggccaatgttccatatgccctgtctgttgcagATATCAACAAGTGTCGGCCACCACAAGAGAAGAGAGTCTGTCATCACACCTGCCACAATGCCGTGGGTAGCTTCCTCTGTACCTGTAGACCTGGTTTTAGACTGCGATCTGATCGGGATTCCTGTGAAGgtaggtaggagcttctcggacaactatagctctagtcctgttatctgaag Alignment from Exonerate_coding2genome ATGTCAACGAGTGTCGGCGGCCACAAGAGAGGAGAGTCTGTCACCACACCTGCCACAACACTGTGGGCAGCTTCCTGTGCACCTGTAGACCTGGTTTCAGGCTTCGATCTGACCGTGTGTCCTGTGAAG ggaaagggggaagaaaagggccaatgttccatatgccctgtctgttgcagATATCAACAAGTGTCGGCCACCACAAGAGAAGAGAGTCTGTCATCACACCTGCCACAATGCCGTGGGTAGCTTCCTCTGTACCTGTAGACCTGGTTTTAGACTGCGATCTGATCGGGATTCCTGTGAAGgtaggtaggagcttctcggacaactatagctctagtcctgttatctgaag Alignment from GeneWise ATGTCAACGAGTGTCGGCGGCCACAAGAGAGGAGAGTCTGTCACCACACCTGCCACAACACTGTGGGCAGCTTCCTGTGCACCTGTAGACCTGGTTTCAGGCTTCGATCTGACCGTGTGTCCTGTGAAG ggaaagggggaagaaaagggccaatgttccatatgccctgtctgttgcagATATCAACAAGTGTCGGCCACCACAAGAGAAGAGAGTCTGTCATCACACCTGCCACAATGCCGTGGGTAGCTTCCTCTGTACCTGTAGACCTGGTTTTAGACTGCGATCTGATCGGGATTCCTGTGAAGgtaggtaggagcttctcggacaactatagctctagtcctgttatctgaag #### Vwce_ID2959_14 --> 2 - 0 Original Alignment gcTGCTCTCTGGATGACAACGGGGTTGAGTTTCCGATCGGACAGATCTGGTCGCCTGGTGATCCCTGTGAGTTATGCGTCTGCCAG tcatggaggtgctcaaaggattgtggtacgctgttgtgtttgttttacagggTGCTCACTAGATGACAATGGGGTGGAGTTCCCGATTGGACCCATCTGGTCACCTGGTGATCCATGTGAATTGTGTGTGTGCCAAgtaagtgatccgtatctgaatatctggctactaggttgttacattaaagt Alignment from CESAR gcTGCTCTCTGGATGACAACGGGGTTGAGTTTCCGATCGGACAGATCTGGTCGCCTGGTGATCCCTGTGAGTTATGCGTCTGCCAG tcatggaggtgctcaaaggattgtggtacgctgttgtgtttgttttacagggTGCTCACTAGATGACAATGGGGTGGAGTTCCCGATTGGACCCATCTGGTCACCTGGTGATCCATGTGAATTGTGTGTGTGCCAAgtaagtgatccgtatctgaatatctggctactaggttgttacattaaagt Alignment from Spaln_aa2Genome GCTGCTCTCTGGATGACAACGGGGTTGAGTTTCCGATCGGACAGATCTGGTCGCCTGGTGATCCCTGTGAGTTATGCGTCTGCCAG tcatggaggtgctcaaaggattgtggtacgctgttgtgtttgttttacagGGTGCTCACTAGATGACAATGGGGTGGAGTTCCCGATTGGACCCATCTGGTCACCTGGTGATCCATGTGAATTGTGTGTGTGCCAAgtaagtgatccgtatctgaatatctggctactaggttgttacattaaagt Alignment from Spaln_nt2Genome GCTGCTCTCTGGATGACAACGGGGTTGAGTTTCCGATCGGACAGATCTGGTCGCCTGGTGATCCCTGTGAGTTATGCGTCTGCCAG tcatggaggtgctcaaaggattgtggtacgctgttgtgtttgttttacagGGTGCTCACTAGATGACAATGGGGTGGAGTTCCCGATTGGACCCATCTGGTCACCTGGTGATCCATGTGAATTGTGTGTGTGCCAAgtaagtgatccgtatctgaatatctggctactaggttgttacattaaagt Alignment from Pairagon GCTGCTCTCTGGATGACAACGGGGTTGAGTTTCCGATCGGACAGATCTGGTCGCCTGGTGATCCCTGTGAGTTATGCGTCTGCCAG tcatggaggtgctcaaaggattgtggtacgctgttgtgtttgttttacagGGTGCTCACTAGATGACAATGGGGTGGAGTTCCCGATTGGACCCATCTGGTCACCTGGTGATCCATGTGAATTGTGTGTGTGCCAAgtaagtgatccgtatctgaatatctggctactaggttgttacattaaagt Alignment from Exonerate_protein2genome GCTGCTCTCTGGATGACAACGGGGTTGAGTTTCCGATCGGACAGATCTGGTCGCCTGGTGATCCCTGTGAGTTATGCGTCTGCCAG tcatggaggtgctcaaaggattgtggtacgctgttgtgtttgttttacagGGTGCTCACTAGATGACAATGGGGTGGAGTTCCCGATTGGACCCATCTGGTCACCTGGTGATCCATGTGAATTGTGTGTGTGCCAAgtaagtgatccgtatctgaatatctggctactaggttgttacattaaagt Alignment from Exonerate_coding2genome tcatggaggtgctcaaaggattgtggtacgctgttgtgtttgttttacagggtgctcactagatgacaatggggtggagttcccgattggacccatctggtcacctggtgatccatgtgaattgtgtgtgtgccaagtaagtgatccgtatctgaatatctggctactaggttgttacattaaagt Alignment from GeneWise GCTGCTCTCTGGATGACAACGGGGTTGAGTTTCCGATCGGACAGATCTGGTCGCCTGGTGATCCCTGTGAGTTATGCGTCTGCCAG tcatggaggtgctcaaaggattgtggtacgctgttgtgtttgttttacagGGTGCTCACTAGATGACAATGGGGTGGAGTTCCCGATTGGACCCATCTGGTCACCTGGTGATCCATGTGAATTGTGTGTGTGCCAAgtaagtgatccgtatctgaatatctggctactaggttgttacattaaagt #### Vwce_ID2965_19 --> 0 - 1 Original Alignment CTGGGAGAGGTGAGCTGTGAGACGGTACCCTGCCGGCCAATCTGTACTGACCCCTCCTGCCCAg tcacctgtctgggctccctcatgggtacgtgcctgtgcttttctttccagCTTGGAGAGGTAAGTTGTGAAACAGTACCTTGCCGTTCTATCTGTACTGATCCCTGCTGCCCAggtaagctggccatgccatccaaggattgttgcttgcaaactgctacatgg Alignment from CESAR CTGGGAGAGGTGAGCTGTGAGACGGTACCCTGCCGGCCAATCTGTACTGACCCCTCCTGCCCAg tcacctgtctgggctccctcatgggtacgtgcctgtgcttttctttccagCTTGGAGAGGTAAGTTGTGAAACAGTACCTTGCCGTTCTATCTGTACTGATCCCTGCTGCCCAggtaagctggccatgccatccaaggattgttgcttgcaaactgctacatgg Alignment from Spaln_aa2Genome CTGGGAGAGGTGAGCTGTGAGACGGTACCCTGCCGGCCAATCTGTACTGACCCCTCCTGCCCAG tcacctgtctgggctccctcatgggtacgtgcctgtgcttttctttccagCTTGGAGAGGTAAGTTGTGAAACAGTACCTTGCCGTTCTATCTGTACTGATCCCTGCTGCCCAGgtaagctggccatgccatccaaggattgttgcttgcaaactgctacatgg Alignment from Spaln_nt2Genome CTGGGAGAGGTGAGCTGTGAGACGGTACCCTGCCGGCCAATCTGTACTGACCCCTCCTGCCCAG tcacctgtctgggctccctcatgggtacgtgcctgtgcttttctttccagCTTGGAGAGGTAAGTTGTGAAACAGTACCTTGCCGTTCTATCTGTACTGATCCCTGCTGCCCAGgtaagctggccatgccatccaaggattgttgcttgcaaactgctacatgg Alignment from Pairagon CTGGGAGAGGTGAGCTGTGAGACGGTACCCTGCCGGCCAATCTGTACTGACCCCTCCTGCCCAG tcacctgtctgggctccctcatgggtacgtgcctgtgcttttctttccagCTTGGAGAGGTAAGTTGTGAAACAGTACCTTGCCGTTCTATCTGTACTGATCCCTGCTGCCCAGgtaagctggccatgccatccaaggattgttgcttgcaaactgctacatgg Alignment from Exonerate_protein2genome CTGGGAGAGGTGAGCTGTGAGACGGTACCCTGCCGGCCAATCTGTACTGACCCCTCCTGCCCAG tcacctgtctgggctccctcatgggtacgtgcctgtgcttttctttccagCTTGGAGAGGTAAGTTGTGAAACAGTACCTTGCCGTTCTATCTGTACTGATCCCTGCTGCCCAGgtaagctggccatgccatccaaggattgttgcttgcaaactgctacatgg Alignment from Exonerate_coding2genome tcacctgtctgggctccctcatgggtacgtgcctgtgcttttctttccagcttggagaggtaagttgtgaaacagtaccttgccgttctatctgtactgatccctgctgcccaggtaagctggccatgccatccaaggattgttgcttgcaaactgctacatgg Alignment from GeneWise CTGGGAGAGGTGAGCTGTGAGACGGTACCCTGCCGGCCAATCTGTACTGACCCCTCCTGCCCAG tcacctgtctgggctccctcatgggtacgtgcctgtgcttttctttccagCTTGGAGAGGTAAGTTGTGAAACAGTACCTTGCCGTTCTATCTGTACTGATCCCTGCTGCCCAGgtaagctggccatgccatccaaggattgttgcttgcaaactgctacatgg #### Wdr74_ID2316_6 --> 0 - 0 Original Alignment GTGCGGAATGATTGGCTTGATCTCCGAGTTCCTATTTGGGACCAAGATACACAGTTCCTCCCTGGGTCACAGAAACTTGTCACATGCACAGGGTACCACCAG atttgaagaattaaggggggaaatgttgccccttctgtgtgtctctgaagGTGCAGAATGATTGGCTTGTTCTCCATGTGCCTATTTGGGACCAAGATTCACAGTTTCTTCCTGGATCACAAAAACTTGTCACATGTATCGTGTACCATGAAgtgagcctgtatgactgtatctagtcctagatgtcaaaagcttggttcta Alignment from CESAR GTGCGGAATGATTGGCTTGATCTCCGAGTTCCTATTTGGGACCAAGATACACAGTTCCTCCCTGGGTCACAGAAACTTGTCACATGCACAGGGTACCACCAG atttgaagaattaaggggggaaatgttgccccttctgtgtgtctctgaagGTGCAGAATGATTGGCTTGTTCTCCATGTGCCTATTTGGGACCAAGATTCACAGTTTCTTCCTGGATCACAAAAACTTGTCACATGTATCGTGTACCATGAAgtgagcctgtatgactgtatctagtcctagatgtcaaaagcttggttcta Alignment from Spaln_aa2Genome GTGCGGAATGATTGGCTTGATCTCCGAGTTCCTATTTGGGACCAAGATACACAGTTCCTCCCTGGGTCACAGAAACTTGTCACATGCACAGGGTACCACCAG atttgaagaattaaggggggaaatgttgccccttctgtgtgtctctgaagGTGCAGAATGATTGGCTTGTTCTCCATGTGCCTATTTGGGACCAAGATTCACAGTTTCTTCCTGGATCACAAAAACTTGTCACATGTATCGTGTACCATGAAgtgagcctgtatgactgtatctagtcctagatgtcaaaagcttggttcta Alignment from Spaln_nt2Genome GTGCGGAATGATTGGCTTGATCTCCGAGTTCCTATTTGGGACCAAGATACACAGTTCCTCCCTGGGTCACAGAAACTTGTCACATGCACAGGGTACCACCAG atttgaagaattaaggggggaaatgttgccccttctgtgtgtctctgaagGTGCAGAATGATTGGCTTGTTCTCCATGTGCCTATTTGGGACCAAGATTCACAGTTTCTTCCTGGATCACAAAAACTTGTCACATGTATCGTGTACCATGAAgtgagcctgtatgactgtatctagtcctagatgtcaaaagcttggttcta Alignment from Pairagon GTGCGGAATGATTGGCTTGATCTCCGAGTTCCTATTTGGGACCAAGATACACAGTTCCTCCCTGGGTCACAGAAACTTGTCACATGCACAGGGTACCAC--- atttgaagaattaaggggggaaatgttgccccttctgtgtgtctctgaagGTGCAGAATGATTGGCTTGTTCTCCATGTGCCTATTTGGGACCAAGATTCACAGTTTCTTCCTGGATCACAAAAACTTGTCACATGTATCGTGTACCATGAAgtgagcctgtatgactgtatctagtcctagatgtcaaaagcttggttcta Alignment from Exonerate_protein2genome AATGATTGGCTTGATCTCCGAGTTCCTATTTGGGACCAAGATACACAGTTCCTCCCTGGGTCACAGAAACTTGTCACATGCACAGGGTACCACCAG atttgaagaattaaggggggaaatgttgccccttctgtgtgtctctgaaggtgcagAATGATTGGCTTGTTCTCCATGTGCCTATTTGGGACCAAGATTCACAGTTTCTTCCTGGATCACAAAAACTTGTCACATGTATCGTGTACCATGAAgtgagcctgtatgactgtatctagtcctagatgtcaaaagcttggttcta Alignment from Exonerate_coding2genome AATGATTGGCTTGATCTCCGAGTTCCTATTTGGGACCAAGATACACAGTTCCTCCCTGGGTCACAGAAACTTGTCACATGCACAGGGTACCACCAG atttgaagaattaaggggggaaatgttgccccttctgtgtgtctctgaaggtgcagAATGATTGGCTTGTTCTCCATGTGCCTATTTGGGACCAAGATTCACAGTTTCTTCCTGGATCACAAAAACTTGTCACATGTATCGTGTACCATGAAgtgagcctgtatgactgtatctagtcctagatgtcaaaagcttggttcta Alignment from GeneWise GTGCGGAATGATTGGCTTGATCTCCGAGTTCCTATTTGGGACCAAGATACACAGTTCCTCCCTGGGTCACAGAAACTTGTCACATGCACAGGGTACCACCAG atttgaagaattaaggggggaaatgttgccccttctgtgtgtctctgaagGTGCAGAATGATTGGCTTGTTCTCCATGTGCCTATTTGGGACCAAGATTCACAGTTTCTTCCTGGATCACAAAAACTTGTCACATGTATCGTGTACCATGAAgtgagcctgtatgactgtatctagtcctagatgtcaaaagcttggttcta #### Wdr74_ID2320_10 --> 0 - 0 Original Alignment GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG ctatgacagacttaggctatacacactctgtgcctgaattctcccttcagGTTTATCTTAAGTGTCAACTTAATTGTCTGCTCCTGTCAGGCCGGGATAACTGGGAGgtaactaaggaataaataaataaaataaggcctttggtgataggcattta Alignment from CESAR GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG ctatgacagacttaggctatacacactctgtgcctgaattctcccttcagGTTTATCTTAAGTGTCAACTTAATTGTCTGCTCCTGTCAGGCCGGGATAACTGGGAGgtaactaaggaataaataaataaaataaggcctttggtgataggcattta Alignment from Spaln_aa2Genome GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG ctatgacagacttaggctatacacactctgtgcctgaattctcccttcagGTTTATCTTAAGTGTCAACTTAATTGTCTGCTCCTGTCAGGCCGGGATAACTGGGAGgtaactaaggaataaataaataaaataaggcctttggtgataggcattta Alignment from Spaln_nt2Genome GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG ctatgacagacttaggctatacacactctgtgcctgaattctcccttcagGTTTATCTTAAGTGTCAACTTAATTGTCTGCTCCTGTCAGGCCGGGATAACTGGGAGgtaactaaggaataaataaataaaataaggcctttggtgataggcattta Alignment from Pairagon GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG ctatgacagacttaggctatacacactctgtgcctgaattctcccttcagGTTTATCTTAAGTGTCAACTTAATTGTCTGCTCCTGTCAGGCCGGGATAACTGGGAGgtaactaaggaataaataaataaaataaggcctttggtgataggcattta Alignment from Exonerate_protein2genome GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG ctatgacagacttaggctatacacactctgtgcctgaattctcccttcagGTTTATCTTAAGTGTCAACTTAATTGTCTGCTCCTGTCAGGCCGGGATAACTGGGAGgtaactaaggaataaataaataaaataaggcctttggtgataggcattta Alignment from Exonerate_coding2genome GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG ctatgacagacttaggctatacacactctgtgcctgaattctcccttcagGTTTATCTTAAGTGTCAACTTAATTGTCTGCTCCTGTCAGGCCGGGATAACTGGGAGgtaactaaggaataaataaataaaataaggcctttggtgataggcattta Alignment from GeneWise GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG ctatgacagacttaggctatacacactctgtgcctgaattctcccttcagGTTTATCTTAAGTGTCAACTTAATTGTCTGCTCCTGTCAGGCCGGGATAACTGGGAGgtaactaaggaataaataaataaaataaggcctttggtgataggcattta #### Wdr96_ID10335_36 --> 0 - 0 Original Alignment TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGTGTTATAGATAAG gtacttttagcaaaatcaacaattgaatcactgtttcgcattgcttgtagTACCTAAATGAACCAAACTACAGGAATGTAATCACTATACTGATTGGAATAATGGAGCAGACAATTGGTGTTGTAGATAAGgtaactgctaagcttataaactaatcaagtcaaagtccactataatgctg Alignment from CESAR TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGTGTTATAGATAAG gtacttttagcaaaatcaacaattgaatcactgtttcgcattgcttgtagTACCTAAATGAACCAAACTACAGGAATGTAATCACTATACTGATTGGAATAATGGAGCAGACAATTGGTGTTGTAGATAAGgtaactgctaagcttataaactaatcaagtcaaagtccactataatgctg Alignment from Spaln_aa2Genome TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGTGTTATAGATAAG gtacttttagcaaaatcaacaattgaatcactgtttcgcattgcttgtagTACCTAAATGAACCAAACTACAGGAATGTAATCACTATACTGATTGGAATAATGGAGCAGACAATTGGTGTTGTAGATAAGgtaactgctaagcttataaactaatcaagtcaaagtccactataatgctg Alignment from Spaln_nt2Genome TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGTGTTATAGATAAG gtacttttagcaaaatcaacaattgaatcactgtttcgcattgcttgtagTACCTAAATGAACCAAACTACAGGAATGTAATCACTATACTGATTGGAATAATGGAGCAGACAATTGGTGTTGTAGATAAGgtaactgctaagcttataaactaatcaagtcaaagtccactataatgctg Alignment from Pairagon TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGTGTTATAGATAAG gtacttttagcaaaatcaacaattgaatcactgtttcgcattgcttgtagTACCTAAATGAACCAAACTACAGGAATGTAATCACTATACTGATTGGAATAATGGAGCAGACAATTGGTGTTGTAGATAAGgtaactgctaagcttataaactaatcaagtcaaagtccactataatgctg Alignment from Exonerate_protein2genome TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGTGTTATAGATAAG gtacttttagcaaaatcaacaattgaatcactgtttcgcattgcttgtagTACCTAAATGAACCAAACTACAGGAATGTAATCACTATACTGATTGGAATAATGGAGCAGACAATTGGTGTTGTAGATAAGgtaactgctaagcttataaactaatcaagtcaaagtccactataatgctg Alignment from Exonerate_coding2genome TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGTGTTATAGATAAG gtacttttagcaaaatcaacaattgaatcactgtttcgcattgcttgtagTACCTAAATGAACCAAACTACAGGAATGTAATCACTATACTGATTGGAATAATGGAGCAGACAATTGGTGTTGTAGATAAGgtaactgctaagcttataaactaatcaagtcaaagtccactataatgctg Alignment from GeneWise TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGTGTTATAGATAAG gtacttttagcaaaatcaacaattgaatcactgtttcgcattgcttgtagTACCTAAATGAACCAAACTACAGGAATGTAATCACTATACTGATTGGAATAATGGAGCAGACAATTGGTGTTGTAGATAAGgtaactgctaagcttataaactaatcaagtcaaagtccactataatgctg #### Wdr96_ID10342_29 --> 0 - 0 Original Alignment GAGGAACTGAAAATAAACAACATTATATTTTCGTTGCTGCTGGATGAAGAACTCAGCTCCAGGGAACAGTTCCTGAACAACTACCTTTTGAAGAAACAGGAGGAGAAA tatcaatagtgggaccttgtttagctgtatgtgttcttttcttcttccagGAAGAACTTAAAATAAACAACATCATAATCTCCTTATTGTTGGATGAAGAATTCAGTTCCAGGGAACAGTTTTTGAACAACTGTCTCTTGAAGAAACAGGAGGAGAAGgtatgcacaagattctggggtaacataaacataaacgcccctctcacgct Alignment from CESAR GAGGAACTGAAAATAAACAACATTATATTTTCGTTGCTGCTGGATGAAGAACTCAGCTCCAGGGAACAGTTCCTGAACAACTACCTTTTGAAGAAACAGGAGGAGAAA tatcaatagtgggaccttgtttagctgtatgtgttcttttcttcttccagGAAGAACTTAAAATAAACAACATCATAATCTCCTTATTGTTGGATGAAGAATTCAGTTCCAGGGAACAGTTTTTGAACAACTGTCTCTTGAAGAAACAGGAGGAGAAGgtatgcacaagattctggggtaacataaacataaacgcccctctcacgct Alignment from Spaln_aa2Genome GAGGAACTGAAAATAAACAACATTATATTTTCGTTGCTGCTGGATGAAGAACTCAGCTCCAGGGAACAGTTCCTGAACAACTACCTTTTGAAGAAACAGGAGGAGAAA tatcaatagtgggaccttgtttagctgtatgtgttcttttcttcttccagGAAGAACTTAAAATAAACAACATCATAATCTCCTTATTGTTGGATGAAGAATTCAGTTCCAGGGAACAGTTTTTGAACAACTGTCTCTTGAAGAAACAGGAGGAGAAGgtatgcacaagattctggggtaacataaacataaacgcccctctcacgct Alignment from Spaln_nt2Genome GAGGAACTGAAAATAAACAACATTATATTTTCGTTGCTGCTGGATGAAGAACTCAGCTCCAGGGAACAGTTCCTGAACAACTACCTTTTGAAGAAACAGGAGGAGAAA tatcaatagtgggaccttgtttagctgtatgtgttcttttcttcttccagGAAGAACTTAAAATAAACAACATCATAATCTCCTTATTGTTGGATGAAGAATTCAGTTCCAGGGAACAGTTTTTGAACAACTGTCTCTTGAAGAAACAGGAGGAGAAGgtatgcacaagattctggggtaacataaacataaacgcccctctcacgct Alignment from Pairagon GAGGAACTGAAAATAAACAACATTATATTTTCGTTGCTGCTGGATGAAGAACTCAGCTCCAGGGAACAGTTCCTGAACAACTACCTTTTGAAGAAACAGGAGGAGAAA tatcaatagtgggaccttgtttagctgtatgtgttcttttcttcttccagGAAGAACTTAAAATAAACAACATCATAATCTCCTTATTGTTGGATGAAGAATTCAGTTCCAGGGAACAGTTTTTGAACAACTGTCTCTTGAAGAAACAGGAGGAGAAGgtatgcacaagattctggggtaacataaacataaacgcccctctcacgct Alignment from Exonerate_protein2genome GAGGAACTGAAAATAAACAACATTATATTTTCGTTGCTGCTGGATGAAGAACTCAGCTCCAGGGAACAGTTCCTGAACAACTACCTTTTGAAGAAACAGGAGGAGAAA tatcaatagtgggaccttgtttagctgtatgtgttcttttcttcttccagGAAGAACTTAAAATAAACAACATCATAATCTCCTTATTGTTGGATGAAGAATTCAGTTCCAGGGAACAGTTTTTGAACAACTGTCTCTTGAAGAAACAGGAGGAGAAGgtatgcacaagattctggggtaacataaacataaacgcccctctcacgct Alignment from Exonerate_coding2genome GAGGAACTGAAAATAAACAACATTATATTTTCGTTGCTGCTGGATGAAGAACTCAGCTCCAGGGAACAGTTCCTGAACAACTACCTTTTGAAGAAACAGGAGGAGAAA tatcaatagtgggaccttgtttagctgtatgtgttcttttcttcttccagGAAGAACTTAAAATAAACAACATCATAATCTCCTTATTGTTGGATGAAGAATTCAGTTCCAGGGAACAGTTTTTGAACAACTGTCTCTTGAAGAAACAGGAGGAGAAGgtatgcacaagattctggggtaacataaacataaacgcccctctcacgct Alignment from GeneWise GAGGAACTGAAAATAAACAACATTATATTTTCGTTGCTGCTGGATGAAGAACTCAGCTCCAGGGAACAGTTCCTGAACAACTACCTTTTGAAGAAACAGGAGGAGAAA tatcaatagtgggaccttgtttagctgtatgtgttcttttcttcttccagGAAGAACTTAAAATAAACAACATCATAATCTCCTTATTGTTGGATGAAGAATTCAGTTCCAGGGAACAGTTTTTGAACAACTGTCTCTTGAAGAAACAGGAGGAGAAGgtatgcacaagattctggggtaacataaacataaacgcccctctcacgct #### Wdr96_ID10344_27 --> 0 - 0 Original Alignment GTGATCCCTCAACCACCTTTCATGGCGAAAGCTGATGCTCTGTGGAGTGAAGATGAAAGGAAGCAATTCAAAGAGTACGAGAAAAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAGTACAGAAAG tggtagagatgatatcactagtagcctagcctttatggttttgttttcagGTGTTCCCCCAACCACCTTTCATGGCAAAAGCTGATGCATTATGGAGTGAAGATGAACGGAAGCAATTTAAAGAGTATGAGAAAAAAGTCAAAGAACTGAATGAAGAGAGAGACAAGTACAGAAAAgtgagtttgggaattaactggagtcagcaaattcatctgactcattctcc Alignment from CESAR GTGATCCCTCAACCACCTTTCATGGCGAAAGCTGATGCTCTGTGGAGTGAAGATGAAAGGAAGCAATTCAAAGAGTACGAGAAAAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAGTACAGAAAG tggtagagatgatatcactagtagcctagcctttatggttttgttttcagGTGTTCCCCCAACCACCTTTCATGGCAAAAGCTGATGCATTATGGAGTGAAGATGAACGGAAGCAATTTAAAGAGTATGAGAAAAAAGTCAAAGAACTGAATGAAGAGAGAGACAAGTACAGAAAAgtgagtttgggaattaactggagtcagcaaattcatctgactcattctcc Alignment from Spaln_aa2Genome GTGATCCCTCAACCACCTTTCATGGCGAAAGCTGATGCTCTGTGGAGTGAAGATGAAAGGAAGCAATTCAAAGAGTACGAGAAAAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAGTACAGAAAG tggtagagatgatatcactagtagcctagcctttatggttttgttttcagGTGTTCCCCCAACCACCTTTCATGGCAAAAGCTGATGCATTATGGAGTGAAGATGAACGGAAGCAATTTAAAGAGTATGAGAAAAAAGTCAAAGAACTGAATGAAGAGAGAGACAAGTACAGAAAAgtgagtttgggaattaactggagtcagcaaattcatctgactcattctcc Alignment from Spaln_nt2Genome GTGATCCCTCAACCACCTTTCATGGCGAAAGCTGATGCTCTGTGGAGTGAAGATGAAAGGAAGCAATTCAAAGAGTACGAGAAAAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAGTACAGAAAG tggtagagatgatatcactagtagcctagcctttatggttttgttttcagGTGTTCCCCCAACCACCTTTCATGGCAAAAGCTGATGCATTATGGAGTGAAGATGAACGGAAGCAATTTAAAGAGTATGAGAAAAAAGTCAAAGAACTGAATGAAGAGAGAGACAAGTACAGAAAAgtgagtttgggaattaactggagtcagcaaattcatctgactcattctcc Alignment from Pairagon GTGATCCCTCAACCACCTTTCATGGCGAAAGCTGATGCTCTGTGGAGTGAAGATGAAAGGAAGCAATTCAAAGAGTACGAGAAAAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAGTACAGAAAG tggtagagatgatatcactagtagcctagcctttatggttttgttttcagGTGTTCCCCCAACCACCTTTCATGGCAAAAGCTGATGCATTATGGAGTGAAGATGAACGGAAGCAATTTAAAGAGTATGAGAAAAAAGTCAAAGAACTGAATGAAGAGAGAGACAAGTACAGAAAAgtgagtttgggaattaactggagtcagcaaattcatctgactcattctcc Alignment from Exonerate_protein2genome GTGATCCCTCAACCACCTTTCATGGCGAAAGCTGATGCTCTGTGGAGTGAAGATGAAAGGAAGCAATTCAAAGAGTACGAGAAAAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAGTACAGAAAG tggtagagatgatatcactagtagcctagcctttatggttttgttttcagGTGTTCCCCCAACCACCTTTCATGGCAAAAGCTGATGCATTATGGAGTGAAGATGAACGGAAGCAATTTAAAGAGTATGAGAAAAAAGTCAAAGAACTGAATGAAGAGAGAGACAAGTACAGAAAAgtgagtttgggaattaactggagtcagcaaattcatctgactcattctcc Alignment from Exonerate_coding2genome GTGATCCCTCAACCACCTTTCATGGCGAAAGCTGATGCTCTGTGGAGTGAAGATGAAAGGAAGCAATTCAAAGAGTACGAGAAAAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAGTACAGAAAG tggtagagatgatatcactagtagcctagcctttatggttttgttttcagGTGTTCCCCCAACCACCTTTCATGGCAAAAGCTGATGCATTATGGAGTGAAGATGAACGGAAGCAATTTAAAGAGTATGAGAAAAAAGTCAAAGAACTGAATGAAGAGAGAGACAAGTACAGAAAAgtgagtttgggaattaactggagtcagcaaattcatctgactcattctcc Alignment from GeneWise GTGATCCCTCAACCACCTTTCATGGCGAAAGCTGATGCTCTGTGGAGTGAAGATGAAAGGAAGCAATTCAAAGAGTACGAGAAAAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAGTACAGAAAG tggtagagatgatatcactagtagcctagcctttatggttttgttttcagGTGTTCCCCCAACCACCTTTCATGGCAAAAGCTGATGCATTATGGAGTGAAGATGAACGGAAGCAATTTAAAGAGTATGAGAAAAAAGTCAAAGAACTGAATGAAGAGAGAGACAAGTACAGAAAAgtgagtttgggaattaactggagtcagcaaattcatctgactcattctcc #### Wdr96_ID10346_25 --> 0 - 0 Original Alignment ATCTCATTTAAAAAATACATTGCTCCATGGCAAAGAGCCAAAATAAAAGAAGTGGTCTCAACCTATGAAATGGAACGGTTGCAGCAAGCACGG taagcatcaaaacttgtcttgtcttgtacttttttatctttatttttcagATTTCATTTGAGATA---TTAGCACCATGGCAGAGAGCCCAAATAAATGAAGTGGTCTCAACATATGAAATGGAACGGCTGCAACAAGTACGTgtaaggggttgtgtgaccctattctaattgtaaataaatgctaatcttaa Alignment from CESAR ATCTCATTTAAAAAATACATTGCTCCATGGCAAAGAGCCAAAATAAAAGAAGTGGTCTCAACCTATGAAATGGAACGGTTGCAGCAAGCACGG taagcatcaaaacttgtcttgtcttgtacttttttatctttatttttcagATTTCATTTGAGATA---TTAGCACCATGGCAGAGAGCCCAAATAAATGAAGTGGTCTCAACATATGAAATGGAACGGCTGCAACAAGTACGTgtaaggggttgtgtgaccctattctaattgtaaataaatgctaatcttaa Alignment from Spaln_aa2Genome ATCTCATTTAAAAAATACATTGCTCCATGGCAAAGAGCCAAAATAAAAGAAGTGGTCTCAACCTATGAAATGGAACGGTTGCAGCAAGCACGG taagcatcaaaacttgtcttgtcttgtacttttttatctttatttttcagATTTCATTT---GAGATATTAGCACCATGGCAGAGAGCCCAAATAAATGAAGTGGTCTCAACATATGAAATGGAACGGCTGCAACAAGTACGTgtaaggggttgtgtgaccctattctaattgtaaataaatgctaatcttaa Alignment from Spaln_nt2Genome ATCTCATTTAAAAAATACATTGCTCCATGGCAAAGAGCCAAAATAAAAGAAGTGGTCTCAACCTATGAAATGGAACGGTTGCAGCAAGCACGG taagcatcaaaacttgtcttgtcttgtacttttttatctttatttttcagATTTCATTTGAGATAT---TAGCACCATGGCAGAGAGCCCAAATAAATGAAGTGGTCTCAACATATGAAATGGAACGGCTGCAACAAGTACGTgtaaggggttgtgtgaccctattctaattgtaaataaatgctaatcttaa Alignment from Pairagon ATCTCATTTAAAAAATACATTGCTCCATGGCAAAGAGCCAAAATAAAAGAAGTGGTCTCAACCTATGAAATGGAACGGTTGCAGCAAGCACGG taagcatcaaaacttgtcttgtcttgtacttttttatctttatttttcagATTTCATTTGAGATAT---TAGCACCATGGCAGAGAGCCCAAATAAATGAAGTGGTCTCAACATATGAAATGGAACGGCTGCAACAAGTACGTgtaaggggttgtgtgaccctattctaattgtaaataaatgctaatcttaa Alignment from Exonerate_protein2genome ATCTCATTTAAAAAATACATTGCTCCATGGCAAAGAGCCAAAATAAAAGAAGTGGTCTCAACCTATGAAATGGAACGGTTGCAGCAAGCACGG taagcatcaaaacttgtcttgtcttgtacttttttatctttatttttcagATTTCATTT---GAGATATTAGCACCATGGCAGAGAGCCCAAATAAATGAAGTGGTCTCAACATATGAAATGGAACGGCTGCAACAAGTACGTgtaaggggttgtgtgaccctattctaattgtaaataaatgctaatcttaa Alignment from Exonerate_coding2genome ATCTCATTTAAAAAATACATTGCTCCATGGCAAAGAGCCAAAATAAAAGAAGTGGTCTCAACCTATGAAATGGAACGGTTGCAGCAAGCACGG taagcatcaaaacttgtcttgtcttgtacttttttatctttatttttcagATTTCATTT---GAGATATTAGCACCATGGCAGAGAGCCCAAATAAATGAAGTGGTCTCAACATATGAAATGGAACGGCTGCAACAAGTACGTgtaaggggttgtgtgaccctattctaattgtaaataaatgctaatcttaa Alignment from GeneWise ATCTCATTTAAAAAATACATTGCTCCATGGCAAAGAGCCAAAATAAAAGAAGTGGTCTCAACCTATGAAATGGAACGGTTGCAGCAAGCACGG taagcatcaaaacttgtcttgtcttgtacttttttatctttatttttcagATTTCATTTGAG---ATATTAGCACCATGGCAGAGAGCCCAAATAAATGAAGTGGTCTCAACATATGAAATGGAACGGCTGCAACAAGTACGTgtaaggggttgtgtgaccctattctaattgtaaataaatgctaatcttaa #### Wdr96_ID10348_23 --> 0 - 0 Original Alignment CTCCGGAAAGAGATTGTGGAGGTCCAGGCGACAACCACTATAGCTAAGAAACACCACGAGGAGGAGGAGGAGGAGGAAGAGGATGAAGAAAGGACAATAAAAACTACCAGTCTGCCCAATTACCTGCTTGGTAGTTTGAGCACTGATTTTGGGGCGGACACATCTTTGTTGACAAGCCAACTGGACCTTCATTCCAGAGAGGAGAAAATCAACCAAATTATATTGCTAAAG tcccctcattggacttgtataaatccctgtatttctttactttcttacagCTTCGGAGGGAGATAGTAGGGGTCCGGGCAACAACTAGTATCGCTAAAAAACACCATGATGAGGAAGAGGAGGAAGAAGAGGATGAAGAAAGAACAATAAAAGCAACTAGTCTGCCCAACTACTTGCTTGGTAGTCTAAGCAGTGATTTCGGAGCAGACACAGCTCTATGGACAGGGCAACTGGACCTTCATTCCAGAAAGGAAAAAATCAATCAAATTATCTTGCTAAAGgtcagtaagttttgtcttgcctgaaacaatgcactaggctgacatcacct Alignment from CESAR CTCCGGAAAGAGATTGTGGAGGTCCAGGCGACAACCACTATAGCTAAGAAACACCACGAGGAGGAGGAGGAGGAGGAAGAGGATGAAGAAAGGACAATAAAAACTACCAGTCTGCCCAATTACCTGCTTGGTAGTTTGAGCACTGATTTTGGGGCGGACACATCTTTGTTGACAAGCCAACTGGACCTTCATTCCAGAGAGGAGAAAATCAACCAAATTATATTGCTAAAG tcccctcattggacttgtataaatccctgtatttctttactttcttacagCTTCGGAGGGAGATAGTAGGGGTCCGGGCAACAACTAGTATCGCTAAAAAACACCATGATGAGGAAGAGGAGGAAGAAGAGGATGAAGAAAGAACAATAAAAGCAACTAGTCTGCCCAACTACTTGCTTGGTAGTCTAAGCAGTGATTTCGGAGCAGACACAGCTCTATGGACAGGGCAACTGGACCTTCATTCCAGAAAGGAAAAAATCAATCAAATTATCTTGCTAAAGgtcagtaagttttgtcttgcctgaaacaatgcactaggctgacatcacct Alignment from Spaln_aa2Genome CTCCGGAAAGAGATTGTGGAGGTCCAGGCGACAACCACTATAGCTAAGAAACACCACGAGGAGGAGGAGGAGGAGGAAGAGGATGAAGAAAGGACAATAAAAACTACCAGTCTGCCCAATTACCTGCTTGGTAGTTTGAGCACTGATTTTGGGGCGGACACATCTTTGTTGACAAGCCAACTGGACCTTCATTCCAGAGAGGAGAAAATCAACCAAATTATATTGCTAAAG tcccctcattggacttgtataaatccctgtatttctttactttcttacagCTTCGGAGGGAGATAGTAGGGGTCCGGGCAACAACTAGTATCGCTAAAAAACACCATGATGAGGAAGAGGAGGAAGAAGAGGATGAAGAAAGAACAATAAAAGCAACTAGTCTGCCCAACTACTTGCTTGGTAGTCTAAGCAGTGATTTCGGAGCAGACACAGCTCTATGGACAGGGCAACTGGACCTTCATTCCAGAAAGGAAAAAATCAATCAAATTATCTTGCTAAAGgtcagtaagttttgtcttgcctgaaacaatgcactaggctgacatcacct Alignment from Spaln_nt2Genome CTCCGGAAAGAGATTGTGGAGGTCCAGGCGACAACCACTATAGCTAAGAAACACCACGAGGAGGAGGAGGAGGAGGAAGAGGATGAAGAAAGGACAATAAAAACTACCAGTCTGCCCAATTACCTGCTTGGTAGTTTGAGCACTGATTTTGGGGCGGACACATCTTTGTTGACAAGCCAACTGGACCTTCATTCCAGAGAGGAGAAAATCAACCAAATTATATTGCTAAAG tcccctcattggacttgtataaatccctgtatttctttactttcttacagCTTCGGAGGGAGATAGTAGGGGTCCGGGCAACAACTAGTATCGCTAAAAAACACCATGATGAGGAAGAGGAGGAAGAAGAGGATGAAGAAAGAACAATAAAAGCAACTAGTCTGCCCAACTACTTGCTTGGTAGTCTAAGCAGTGATTTCGGAGCAGACACAGCTCTATGGACAGGGCAACTGGACCTTCATTCCAGAAAGGAAAAAATCAATCAAATTATCTTGCTAAAGgtcagtaagttttgtcttgcctgaaacaatgcactaggctgacatcacct Alignment from Pairagon CTCCGGAAAGAGATTGTGGAGGTCCAGGCGACAACCACTATAGCTAAGAAACACCACGAGGAGGAGGAGGAGGAGGAAGAGGATGAAGAAAGGACAATAAAAACTACCAGTCTGCCCAATTACCTGCTTGGTAGTTTGAGCACTGATTTTGGGGCGGACACATCTTTGTTGACAAGCCAACTGGACCTTCATTCCAGAGAGGAGAAAATCAACCAAATTATATTGCTAAAG tcccctcattggacttgtataaatccctgtatttctttactttcttacagCTTCGGAGGGAGATAGTAGGGGTCCGGGCAACAACTAGTATCGCTAAAAAACACCATGATGAGGAAGAGGAGGAAGAAGAGGATGAAGAAAGAACAATAAAAGCAACTAGTCTGCCCAACTACTTGCTTGGTAGTCTAAGCAGTGATTTCGGAGCAGACACAGCTCTATGGACAGGGCAACTGGACCTTCATTCCAGAAAGGAAAAAATCAATCAAATTATCTTGCTAAAGgtcagtaagttttgtcttgcctgaaacaatgcactaggctgacatcacct Alignment from Exonerate_protein2genome CTCCGGAAAGAGATTGTGGAGGTCCAGGCGACAACCACTATAGCTAAGAAACACCACGAGGAGGAGGAGGAGGAGGAAGAGGATGAAGAAAGGACAATAAAAACTACCAGTCTGCCCAATTACCTGCTTGGTAGTTTGAGCACTGATTTTGGGGCGGACACATCTTTGTTGACAAGCCAACTGGACCTTCATTCCAGAGAGGAGAAAATCAACCAAATTATATTGCTAAAG tcccctcattggacttgtataaatccctgtatttctttactttcttacagCTTCGGAGGGAGATAGTAGGGGTCCGGGCAACAACTAGTATCGCTAAAAAACACCATGATGAGGAAGAGGAGGAAGAAGAGGATGAAGAAAGAACAATAAAAGCAACTAGTCTGCCCAACTACTTGCTTGGTAGTCTAAGCAGTGATTTCGGAGCAGACACAGCTCTATGGACAGGGCAACTGGACCTTCATTCCAGAAAGGAAAAAATCAATCAAATTATCTTGCTAAAGgtcagtaagttttgtcttgcctgaaacaatgcactaggctgacatcacct Alignment from Exonerate_coding2genome CTCCGGAAAGAGATTGTGGAGGTCCAGGCGACAACCACTATAGCTAAGAAACACCACGAGGAGGAGGAGGAGGAGGAAGAGGATGAAGAAAGGACAATAAAAACTACCAGTCTGCCCAATTACCTGCTTGGTAGTTTGAGCACTGATTTTGGGGCGGACACATCTTTGTTGACAAGCCAACTGGACCTTCATTCCAGAGAGGAGAAAATCAACCAAATTATATTGCTAAAG tcccctcattggacttgtataaatccctgtatttctttactttcttacagCTTCGGAGGGAGATAGTAGGGGTCCGGGCAACAACTAGTATCGCTAAAAAACACCATGATGAGGAAGAGGAGGAAGAAGAGGATGAAGAAAGAACAATAAAAGCAACTAGTCTGCCCAACTACTTGCTTGGTAGTCTAAGCAGTGATTTCGGAGCAGACACAGCTCTATGGACAGGGCAACTGGACCTTCATTCCAGAAAGGAAAAAATCAATCAAATTATCTTGCTAAAGgtcagtaagttttgtcttgcctgaaacaatgcactaggctgacatcacct Alignment from GeneWise CTCCGGAAAGAGATTGTGGAGGTCCAGGCGACAACCACTATAGCTAAGAAACACCACGAGGAGGAGGAGGAGGAGGAAGAGGATGAAGAAAGGACAATAAAAACTACCAGTCTGCCCAATTACCTGCTTGGTAGTTTGAGCACTGATTTTGGGGCGGACACATCTTTGTTGACAAGCCAACTGGACCTTCATTCCAGAGAGGAGAAAATCAACCAAATTATATTGCTAAAG tcccctcattggacttgtataaatccctgtatttctttactttcttacagCTTCGGAGGGAGATAGTAGGGGTCCGGGCAACAACTAGTATCGCTAAAAAACACCATGATGAGGAAGAGGAGGAAGAAGAGGATGAAGAAAGAACAATAAAAGCAACTAGTCTGCCCAACTACTTGCTTGGTAGTCTAAGCAGTGATTTCGGAGCAGACACAGCTCTATGGACAGGGCAACTGGACCTTCATTCCAGAAAGGAAAAAATCAATCAAATTATCTTGCTAAAGgtcagtaagttttgtcttgcctgaaacaatgcactaggctgacatcacct #### Wdr96_ID10350_21 --> 0 - 0 Original Alignment ATAAGGAAAGATGTGGAGATGCACAACTTGGCCCAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCTGTGAAGGGCCGGGCTCTAAAG agaattgcttttttcacatccttcctttttttgttttcttatttttaaagATAAGGAAGGGTGTGGAGATGCACAACTTAACACAGAGCTACATAACGGAACTTATCAAGGAAGAGTGTTGGACCTCCATGGTGGTCAAAGGACGGGCACTACGGgtgggtttcaactgctagtgcatgcaaatatgtatgtctgaggtgtgtct Alignment from CESAR ATAAGGAAAGATGTGGAGATGCACAACTTGGCCCAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCTGTGAAGGGCCGGGCTCTAAAG agaattgcttttttcacatccttcctttttttgttttcttatttttaaagATAAGGAAGGGTGTGGAGATGCACAACTTAACACAGAGCTACATAACGGAACTTATCAAGGAAGAGTGTTGGACCTCCATGGTGGTCAAAGGACGGGCACTACGGgtgggtttcaactgctagtgcatgcaaatatgtatgtctgaggtgtgtct Alignment from Spaln_aa2Genome ATAAGGAAAGATGTGGAGATGCACAACTTGGCCCAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCTGTGAAGGGCCGGGCTCTAAAG agaattgcttttttcacatccttcctttttttgttttcttatttttaaagATAAGGAAGGGTGTGGAGATGCACAACTTAACACAGAGCTACATAACGGAACTTATCAAGGAAGAGTGTTGGACCTCCATGGTGGTCAAAGGACGGGCACTACGGgtgggtttcaactgctagtgcatgcaaatatgtatgtctgaggtgtgtct Alignment from Spaln_nt2Genome ATAAGGAAAGATGTGGAGATGCACAACTTGGCCCAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCTGTGAAGGGCCGGGCTCTAAAG agaattgcttttttcacatccttcctttttttgttttcttatttttaaagATAAGGAAGGGTGTGGAGATGCACAACTTAACACAGAGCTACATAACGGAACTTATCAAGGAAGAGTGTTGGACCTCCATGGTGGTCAAAGGACGGGCACTACGGgtgggtttcaactgctagtgcatgcaaatatgtatgtctgaggtgtgtct Alignment from Pairagon ATAAGGAAAGATGTGGAGATGCACAACTTGGCCCAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCTGTGAAGGGCCGGGCTCTAAAG agaattgcttttttcacatccttcctttttttgttttcttatttttaaagATAAGGAAGGGTGTGGAGATGCACAACTTAACACAGAGCTACATAACGGAACTTATCAAGGAAGAGTGTTGGACCTCCATGGTGGTCAAAGGACGGGCACTACGGgtgggtttcaactgctagtgcatgcaaatatgtatgtctgaggtgtgtct Alignment from Exonerate_protein2genome ATAAGGAAAGATGTGGAGATGCACAACTTGGCCCAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCTGTGAAGGGCCGGGCTCTAAAG agaattgcttttttcacatccttcctttttttgttttcttatttttaaagATAAGGAAGGGTGTGGAGATGCACAACTTAACACAGAGCTACATAACGGAACTTATCAAGGAAGAGTGTTGGACCTCCATGGTGGTCAAAGGACGGGCACTACGGgtgggtttcaactgctagtgcatgcaaatatgtatgtctgaggtgtgtct Alignment from Exonerate_coding2genome ATAAGGAAAGATGTGGAGATGCACAACTTGGCCCAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCTGTGAAGGGCCGGGCTCTAAAG agaattgcttttttcacatccttcctttttttgttttcttatttttaaagATAAGGAAGGGTGTGGAGATGCACAACTTAACACAGAGCTACATAACGGAACTTATCAAGGAAGAGTGTTGGACCTCCATGGTGGTCAAAGGACGGGCACTACGGgtgggtttcaactgctagtgcatgcaaatatgtatgtctgaggtgtgtct Alignment from GeneWise ATAAGGAAAGATGTGGAGATGCACAACTTGGCCCAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCTGTGAAGGGCCGGGCTCTAAAG agaattgcttttttcacatccttcctttttttgttttcttatttttaaagATAAGGAAGGGTGTGGAGATGCACAACTTAACACAGAGCTACATAACGGAACTTATCAAGGAAGAGTGTTGGACCTCCATGGTGGTCAAAGGACGGGCACTACGGgtgggtttcaactgctagtgcatgcaaatatgtatgtctgaggtgtgtct #### Wnt8b_ID9020_3 --> 0 - 1 Original Alignment GCTTACCTGGTCTACTCCAGCAGCGTGGCCGCTGGCGCCCAGAGTGGTATTGAAGAATGTAAATACCAGTTTGCTTGGGACCGTTGGAATTGCCCCGAGAGAGCTTTACAGCTGTCCAGCCATGGTGGACTTCGAAGCg aatctgaaccgactatctgacattcacttcatcctggcccttgcttgcagTCTTACCTGGTCTACTCCAGCAGCGTATCTGCAGGTGCCCAGAGTGCAATTGAAGAATCTGAATTCCAGTTGGCTTGGGACCGTTGGAATTGCCCCAAGAGAGCCTTACAGCTGTCCAGCGATGGGGGACTGCGTAGCcgtaggagaggcctttcccctcctcaccttaaacaagcctagactatgatc Alignment from CESAR GCTTACCTGGTCTACTCCAGCAGCGTGGCCGCTGGCGCCCAGAGTGGTATTGAAGAATGTAAATACCAGTTTGCTTGGGACCGTTGGAATTGCCCCGAGAGAGCTTTACAGCTGTCCAGCCATGGTGGACTTCGAAGCg aatctgaaccgactatctgacattcacttcatcctggcccttgcttgcagTCTTACCTGGTCTACTCCAGCAGCGTATCTGCAGGTGCCCAGAGTGCAATTGAAGAATCTGAATTCCAGTTGGCTTGGGACCGTTGGAATTGCCCCAAGAGAGCCTTACAGCTGTCCAGCGATGGGGGACTGCGTAGCcgtaggagaggcctttcccctcctcaccttaaacaagcctagactatgatc Alignment from Spaln_aa2Genome GCTTACCTGGTCTACTCCAGCAGCGTGGCCGCTGGCGCCCAGAGTGGTATTGAAGAATGTAAATACCAGTTTGCTTGGGACCGTTGGAATTGCCCCGAGAGAGCTTTACAGCTGTCCAGCCATGGTGGACTTCGAAGCG aatctgaaccgactatctgacattcacttcatcctggcccttgcttgcagTCTTACCTGGTCTACTCCAGCAGCGTATCTGCAGGTGCCCAGAGTGCAATTGAAGAATCTGAATTCCAGTTGGCTTGGGACCGTTGGAATTGCCCCAAGAGAGCCTTACAGCTGTCCAGCGATGGGGGACTGCGTAGCCgtaggagaggcctttcccctcctcaccttaaacaagcctagactatgatc Alignment from Spaln_nt2Genome GCTTACCTGGTCTACTCCAGCAGCGTGGCCGCTGGCGCCCAGAGTGGTATTGAAGAATGTAAATACCAGTTTGCTTGGGACCGTTGGAATTGCCCCGAGAGAGCTTTACAGCTGTCCAGCCATGGTGGACTTCGAAGCG aatctgaaccgactatctgacattcacttcatcctggcccttgcttgcagTCTTACCTGGTCTACTCCAGCAGCGTATCTGCAGGTGCCCAGAGTGCAATTGAAGAATCTGAATTCCAGTTGGCTTGGGACCGTTGGAATTGCCCCAAGAGAGCCTTACAGCTGTCCAGCGATGGGGGACTGCGTAGCCgtaggagaggcctttcccctcctcaccttaaacaagcctagactatgatc Alignment from Pairagon GCTTACCTGGTCTACTCCAGCAGCGTGGCCGCTGGCGCCCAGAGTGGTATTGAAGAATGTAAATACCAGTTTGCTTGGGACCGTTGGAATTGCCCCGAGAGAGCTTTACAGCTGTCCAGCCATGGTGGACTTCGAAGCG aatctgaaccgactatctgacattcacttcatcctggcccttgcttgcagTCTTACCTGGTCTACTCCAGCAGCGTATCTGCAGGTGCCCAGAGTGCAATTGAAGAATCTGAATTCCAGTTGGCTTGGGACCGTTGGAATTGCCCCAAGAGAGCCTTACAGCTGTCCAGCGATGGGGGACTGCGTAGCCgtaggagaggcctttcccctcctcaccttaaacaagcctagactatgatc Alignment from Exonerate_protein2genome GCTTACCTGGTCTACTCCAGCAGCGTGGCCGCTGGCGCCCAGAGTGGTATTGAAGAATGTAAATACCAGTTTGCTTGGGACCGTTGGAATTGCCCCGAGAGAGCTTTACAGCTGTCCAGCCATGGTGGACTTCGAAGCG aatctgaaccgactatctgacattcacttcatcctggcccttgcttgcagTCTTACCTGGTCTACTCCAGCAGCGTATCTGCAGGTGCCCAGAGTGCAATTGAAGAATCTGAATTCCAGTTGGCTTGGGACCGTTGGAATTGCCCCAAGAGAGCCTTACAGCTGTCCAGCGATGGGGGACTGCGTAGCCgtaggagaggcctttcccctcctcaccttaaacaagcctagactatgatc Alignment from Exonerate_coding2genome AAGGCTTACCTGGTCTACTCCAGCAGCGTGGCCGCTGGCGCCCAGAGTGGTATTGAAGAATGTAAATACCAGTTTGCTTGGGACCGTTGGAATTGCCCCGAGAGAGCTTTACAGCTGTCCAGCCATGGTGGACTTCGAAGCG aatctgaaccgactatctgacattcacttcatcctggcccttgcttgCAGTCTTACCTGGTCTACTCCAGCAGCGTATCTGCAGGTGCCCAGAGTGCAATTGAAGAATCTGAATTCCAGTTGGCTTGGGACCGTTGGAATTGCCCCAAGAGAGCCTTACAGCTGTCCAGCGATGGGGGACTGCGTAGCCgtaggagaggcctttcccctcctcaccttaaacaagcctagactatgatc Alignment from GeneWise GCTTACCTGGTCTACTCCAGCAGCGTGGCCGCTGGCGCCCAGAGTGGTATTGAAGAATGTAAATACCAGTTTGCTTGGGACCGTTGGAATTGCCCCGAGAGAGCTTTACAGCTGTCCAGCCATGGTGGACTTCGAAGCG aatctgaaccgactatctgacattcacttcatcctggcccttgcttgcagTCTTACCTGGTCTACTCCAGCAGCGTATCTGCAGGTGCCCAGAGTGCAATTGAAGAATCTGAATTCCAGTTGGCTTGGGACCGTTGGAATTGCCCCAAGAGAGCCTTACAGCTGTCCAGCGATGGGGGACTGCGTAGCCgtaggagaggcctttcccctcctcaccttaaacaagcctagactatgatc #### Xpnpep1_ID11137_18 --> 0 - 0 Original Alignment TATAATTTCAACAACCGAGGAAGCCTGACCTTTGAACCTCTAACTTTGGTTCCCATCCAGACCAAAATGATAGATGTGAATGCTCTTACAGATAAAGAG ttatgaagcagggattattataacatgctgtagcctggtttgttgtacagTATAACTTCAACAACCGAGGAAGCCTTACATTTGAGCCTCTAACTTTGGTCCCCATCCAGACCAAAATGATAGATGTGAACGCACTCACGGGTAAAGAAgtatgatagcgaaagtcgggggaaagttctgatgggctctttcattacct Alignment from CESAR TATAATTTCAACAACCGAGGAAGCCTGACCTTTGAACCTCTAACTTTGGTTCCCATCCAGACCAAAATGATAGATGTGAATGCTCTTACAGATAAAGAG ttatgaagcagggattattataacatgctgtagcctggtttgttgtacagTATAACTTCAACAACCGAGGAAGCCTTACATTTGAGCCTCTAACTTTGGTCCCCATCCAGACCAAAATGATAGATGTGAACGCACTCACGGGTAAAGAAgtatgatagcgaaagtcgggggaaagttctgatgggctctttcattacct Alignment from Spaln_aa2Genome TATAATTTCAACAACCGAGGAAGCCTGACCTTTGAACCTCTAACTTTGGTTCCCATCCAGACCAAAATGATAGATGTGAATGCTCTTACAGATAAAGAG ttatgaagcagggattattataacatgctgtagcctggtttgttgtacagTATAACTTCAACAACCGAGGAAGCCTTACATTTGAGCCTCTAACTTTGGTCCCCATCCAGACCAAAATGATAGATGTGAACGCACTCACGGGTAAAGAAgtatgatagcgaaagtcgggggaaagttctgatgggctctttcattacct Alignment from Spaln_nt2Genome TATAATTTCAACAACCGAGGAAGCCTGACCTTTGAACCTCTAACTTTGGTTCCCATCCAGACCAAAATGATAGATGTGAATGCTCTTACAGATAAAGAG ttatgaagcagggattattataacatgctgtagcctggtttgttgtacagTATAACTTCAACAACCGAGGAAGCCTTACATTTGAGCCTCTAACTTTGGTCCCCATCCAGACCAAAATGATAGATGTGAACGCACTCACGGGTAAAGAAgtatgatagcgaaagtcgggggaaagttctgatgggctctttcattacct Alignment from Pairagon TATAATTTCAACAACCGAGGAAGCCTGACCTTTGAACCTCTAACTTTGGTTCCCATCCAGACCAAAATGATAGATGTGAATGCTCTTACAGATAAAGAG ttatgaagcagggattattataacatgctgtagcctggtttgttgtacagTATAACTTCAACAACCGAGGAAGCCTTACATTTGAGCCTCTAACTTTGGTCCCCATCCAGACCAAAATGATAGATGTGAACGCACTCACGGGTAAAGAAgtatgatagcgaaagtcgggggaaagttctgatgggctctttcattacct Alignment from Exonerate_protein2genome TATAATTTCAACAACCGAGGAAGCCTGACCTTTGAACCTCTAACTTTGGTTCCCATCCAGACCAAAATGATAGATGTGAATGCTCTTACAGATAAAGAG ttatgaagcagggattattataacatgctgtagcctggtttgttgtacagTATAACTTCAACAACCGAGGAAGCCTTACATTTGAGCCTCTAACTTTGGTCCCCATCCAGACCAAAATGATAGATGTGAACGCACTCACGGGTAAAGAAgtatgatagcgaaagtcgggggaaagttctgatgggctctttcattacct Alignment from Exonerate_coding2genome TATAATTTCAACAACCGAGGAAGCCTGACCTTTGAACCTCTAACTTTGGTTCCCATCCAGACCAAAATGATAGATGTGAATGCTCTTACAGATAAAGAG ttatgaagcagggattattataacatgctgtagcctggtttgttgtacagTATAACTTCAACAACCGAGGAAGCCTTACATTTGAGCCTCTAACTTTGGTCCCCATCCAGACCAAAATGATAGATGTGAACGCACTCACGGGTAAAGAAgtatgatagcgaaagtcgggggaaagttctgatgggctctttcattacct Alignment from GeneWise TATAATTTCAACAACCGAGGAAGCCTGACCTTTGAACCTCTAACTTTGGTTCCCATCCAGACCAAAATGATAGATGTGAATGCTCTTACAGATAAAGAG ttatgaagcagggattattataacatgctgtagcctggtttgttgtacagTATAACTTCAACAACCGAGGAAGCCTTACATTTGAGCCTCTAACTTTGGTCCCCATCCAGACCAAAATGATAGATGTGAACGCACTCACGGGTAAAGAAgtatgatagcgaaagtcgggggaaagttctgatgggctctttcattacct #### Xpnpep1_ID11150_6 --> 2 - 1 Original Alignment gcATCTCGTGGAAGGAGAAGGTTGCAGACCTCCGGTTGAAAATGGCAGAGAGGAGCATCGCGTGGTTTGTAGTCACAGCCCTAGACGAGATTGCAt acttccagggttgggagtgttgtagaagcttcctcacatgcctgagtcaggcATCTCATGGAAGGAGAAGGTTGCAGACCTCCAATTGAAAATGGCAGAGAGGAGCATTGCGTGGTTTGTAGTCACAGCCCTAGATGAGATTGCCtgtctgtgttccagtatccttactgaagtacttgcacatctactctattta Alignment from CESAR gcATCTCGTGGAAGGAGAAGGTTGCAGACCTCCGGTTGAAAATGGCAGAGAGGAGCATCGCGTGGTTTGTAGTCACAGCCCTAGACGAGATTGCAt acttccagggttgggagtgttgtagaagcttcctcacatgcctgagtcaggcATCTCATGGAAGGAGAAGGTTGCAGACCTCCAATTGAAAATGGCAGAGAGGAGCATTGCGTGGTTTGTAGTCACAGCCCTAGATGAGATTGCCtgtctgtgttccagtatccttactgaagtacttgcacatctactctattta Alignment from Spaln_aa2Genome GCATCTCGTGGAAGGAGAAGGTTGCAGACCTCCGGTTGAAAATGGCAGAGAGGAGCATCGCGTGGTTTGTAGTCACAGCCCTAGACGAGATTGCAT acttccagggttgggagtgttgtagaagcttcctcacatgcctgagtcagGCATCTCATGGAAGGAGAAGGTTGCAGACCTCCAATTGAAAATGGCAGAGAGGAGCATTGCGTGGTTTGTAGTCACAGCCCTAGATGAGATTGCCTgtctgtgttccagtatccttactgaagtacttgcacatctactctattta Alignment from Spaln_nt2Genome GCATCTCGTGGAAGGAGAAGGTTGCAGACCTCCGGTTGAAAATGGCAGAGAGGAGCATCGCGTGGTTTGTAGTCACAGCCCTAGACGAGATTGCAT acttccagggttgggagtgttgtagaagcttcctcacatgcctgagtcagGCATCTCATGGAAGGAGAAGGTTGCAGACCTCCAATTGAAAATGGCAGAGAGGAGCATTGCGTGGTTTGTAGTCACAGCCCTAGATGAGATTGCCTgtctgtgttccagtatccttactgaagtacttgcacatctactctattta Alignment from Pairagon GCATCTCGTGGAAGGAGAAGGTTGCAGACCTCCGGTTGAAAATGGCAGAGAGGAGCATCGCGTGGTTTGTAGTCACAGCCCTAGACGAGATTGCAT acttccagggttgggagtgttgtagaagcttcctcacatgcctgagtcagGCATCTCATGGAAGGAGAAGGTTGCAGACCTCCAATTGAAAATGGCAGAGAGGAGCATTGCGTGGTTTGTAGTCACAGCCCTAGATGAGATTGCCTgtctgtgttccagtatccttactgaagtacttgcacatctactctattta Alignment from Exonerate_protein2genome GCATCTCGTGGAAGGAGAAGGTTGCAGACCTCCGGTTGAAAATGGCAGAGAGGAGCATCGCGTGGTTTGTAGTCACAGCCCTAGACGAGATTGCAT acttccagggttgggagtgttgtagaagcttcctcacatgcctgagtcagGCATCTCATGGAAGGAGAAGGTTGCAGACCTCCAATTGAAAATGGCAGAGAGGAGCATTGCGTGGTTTGTAGTCACAGCCCTAGATGAGATTGCCTgtctgtgttccagtatccttactgaagtacttgcacatctactctattta Alignment from Exonerate_coding2genome GCATCTCGTGGAAGGAGAAGGTTGCAGACCTCCGGTTGAAAATGGCAGAGAGGAGCATCGCGTGGTTTGTAGTCACAGCCCTAGACGAGATTGCAT acttccagggttgggagtgttgtagaagcttcctcacatgcctgagtcagGCATCTCATGGAAGGAGAAGGTTGCAGACCTCCAATTGAAAATGGCAGAGAGGAGCATTGCGTGGTTTGTAGTCACAGCCCTAGATGAGATTGCCTgtctgtgttccagtatccttactgaagtacttgcacatctactctattta Alignment from GeneWise GCATCTCGTGGAAGGAGAAGGTTGCAGACCTCCGGTTGAAAATGGCAGAGAGGAGCATCGCGTGGTTTGTAGTCACAGCCCTAGACGAGATTGCAT acttccagggttgggagtgttgtagaagcttcctcacatgcctgagtcagGCATCTCATGGAAGGAGAAGGTTGCAGACCTCCAATTGAAAATGGCAGAGAGGAGCATTGCGTGGTTTGTAGTCACAGCCCTAGATGAGATTGCCTgtctgtgttccagtatccttactgaagtacttgcacatctactctattta #### Zdhhc16_ID8347_4 --> 1 - 1 Original Alignment gTGTGTGCTGAAGATGGATCATCACTGCc gattaccatccaaccccaagaagctcaacagcagtccttgtgtgccacaggTGTGTGTTGAAGATGGATCATCACTGTcgtaagtactgtattgtttcaatatcctcattcactagtgtcctgagactc Alignment from CESAR gTGTGTGCTGAAGATGGATCATCACTGCc gattaccatccaaccccaagaagctcaacagcagtccttgtgtgccacaggTGTGTGTTGAAGATGGATCATCACTGTcgtaagtactgtattgtttcaatatcctcattcactagtgtcctgagactc Alignment from Spaln_aa2Genome GTGTGTGCTGAAGATGGATCATCACTGCC gattaccatccaaccccaagaagctcaacagcagtccttgtgtgccacagGTGTGTGTTGAAGATGGATCATCACTGTCgtaagtactgtattgtttcaatatcctcattcactagtgtcctgagactc Alignment from Spaln_nt2Genome GTGTGTGCTGAAGATGGATCATCACTGCC gattaccatccaaccccaagaagctcaacagcagtccttgtgtgccacagGTGTGTGTTGAAGATGGATCATCACTGTCgtaagtactgtattgtttcaatatcctcattcactagtgtcctgagactc Alignment from Pairagon GTGTGTGCTGAAGATGGATCATCACTGCC gattaccatccaaccccaagaagctcaacagcagtccttgtgtgccacagGTGTGTGTTGAAGATGGATCATCACTGTCgtaagtactgtattgtttcaatatcctcattcactagtgtcctgagactc Alignment from Exonerate_protein2genome GTGTGTGCTGAAGATGGATCATCACTGCC gattaccatccaaccccaagaagctcaacagcagtccttgtgtgccacagGTGTGTGTTGAAGATGGATCATCACTGTCgtaagtactgtattgtttcaatatcctcattcactagtgtcctgagactc Alignment from Exonerate_coding2genome GTGTGTGCTGAAGATGGATCATCACTGCC gattaccatccaaccccaagaagctcaacagcagtccttgtgtgccacagGTGTGTGTTGAAGATGGATCATCACTGTCgtaagtactgtattgtttcaatatcctcattcactagtgtcctgagactc Alignment from GeneWise GTGTGTGCTGAAGATGGATCATCACTGCC gattaccatccaaccccaagaagctcaacagcagtccttgtgtgccacagGTGTGTGTTGAAGATGGATCATCACTGTCgtaagtactgtattgtttcaatatcctcattcactagtgtcctgagactc #### Zdhhc16_ID8351_8 --> 0 - 2 Original Alignment GTGTTTAGGAATCCTTACAACTATGGCTGCTTGGACAACTGGAAGGTGTTCCTAGGTGTGGACACAGGAag agggggctcctcaaagtcaaggagcctctgctgttttcccttattcacagGCTTTTAGGAATCCTTACAACTATGGCTGTTTAGACAATTGGAAGGTATTCTTAGGTGTAGACACAGGAaggttggtacagattctgcaaggtgtagcttattagttttaaatggttgacc Alignment from CESAR GTGTTTAGGAATCCTTACAACTATGGCTGCTTGGACAACTGGAAGGTGTTCCTAGGTGTGGACACAGGAag agggggctcctcaaagtcaaggagcctctgctgttttcccttattcacagGCTTTTAGGAATCCTTACAACTATGGCTGTTTAGACAATTGGAAGGTATTCTTAGGTGTAGACACAGGAaggttggtacagattctgcaaggtgtagcttattagttttaaatggttgacc Alignment from Spaln_aa2Genome GTGTTTAGGAATCCTTACAACTATGGCTGCTTGGACAACTGGAAGGTGTTCCTAGGTGTGGACACAGGAAG agggggctcctcaaagtcaaggagcctctgctgttttcccttattcacagGCTTTTAGGAATCCTTACAACTATGGCTGTTTAGACAATTGGAAGGTATTCTTAGGTGTAGACACAGGAAGgttggtacagattctgcaaggtgtagcttattagttttaaatggttgacc Alignment from Spaln_nt2Genome GTGTTTAGGAATCCTTACAACTATGGCTGCTTGGACAACTGGAAGGTGTTCCTAGGTGTGGACACAGGAAG agggggctcctcaaagtcaaggagcctctgctgttttcccttattcacagGCTTTTAGGAATCCTTACAACTATGGCTGTTTAGACAATTGGAAGGTATTCTTAGGTGTAGACACAGGAAGgttggtacagattctgcaaggtgtagcttattagttttaaatggttgacc Alignment from Pairagon GTGTTTAGGAATCCTTACAACTATGGCTGCTTGGACAACTGGAAGGTGTTCCTAGGTGTGGACACAGGAAG agggggctcctcaaagtcaaggagcctctgctgttttcccttattcacagGCTTTTAGGAATCCTTACAACTATGGCTGTTTAGACAATTGGAAGGTATTCTTAGGTGTAGACACAGGAAGgttggtacagattctgcaaggtgtagcttattagttttaaatggttgacc Alignment from Exonerate_protein2genome GTGTTTAGGAATCCTTACAACTATGGCTGCTTGGACAACTGGAAGGTGTTCCTAGGTGTGGACACAGGAAG agggggctcctcaaagtcaaggagcctctgctgttttcccttattcacagGCTTTTAGGAATCCTTACAACTATGGCTGTTTAGACAATTGGAAGGTATTCTTAGGTGTAGACACAGGAAGgttggtacagattctgcaaggtgtagcttattagttttaaatggttgacc Alignment from Exonerate_coding2genome GTGTTTAGGAATCCTTACAACTATGGCTGCTTGGACAACTGGAAGGTGTTCCTAGGTGTGGACACAGGAAG agggggctcctcaaagtcaaggagcctctgctgttttcccttattcacagGCTTTTAGGAATCCTTACAACTATGGCTGTTTAGACAATTGGAAGGTATTCTTAGGTGTAGACACAGGAAGgttggtacagattctgcaaggtgtagcttattagttttaaatggttgacc Alignment from GeneWise GTGTTTAGGAATCCTTACAACTATGGCTGCTTGGACAACTGGAAGGTGTTCCTAGGTGTGGACACAGGAAG agggggctcctcaaagtcaaggagcctctgctgttttcccttattcacagGCTTTTAGGAATCCTTACAACTATGGCTGTTTAGACAATTGGAAGGTATTCTTAGGTGTAGACACAGGAAGgttggtacagattctgcaaggtgtagcttattagttttaaatggttgacc #### Zdhhc6_ID11621_8 --> 0 - 2 Original Alignment GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGcg acaaattagacaggggtccgtcgtagctcatgccctgatgtcacccatagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATAGAGGAGTAAGAACCTTCTTTACAAGCCCCTGTACG---GAGCCCCGAATCCGGCTACAACAAGGTGAGTTCATACTAGCAATGAGGGGGCTGaggtaagcggagggggttctttatcgagaaactgaaatagtatttgtgtgtc Alignment from CESAR GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGcg acaaattagacaggggtccgtcgtagctcatgccctgatgtcacccatagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATAGAGGAGTAAGAACCTTCTTTACAAGCCCCTGTACG---GAGCCCCGAATCCGGCTACAACAAGGTGAGTTCATACTAGCAATGAGGGGGCTGaggtaagcggagggggttctttatcgagaaactgaaaaccacactctggttt Alignment from Spaln_aa2Genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaaattagacaggggtccgtcgtagctcatgccctgatgtcacccatagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATAGAGGAGTAAGAACCTTCTTTACAAGCCCCTGTACGGAG---CCCCGAATCCGGCTACAACAAGGTGAGTTCATACTAGCAATGAGGGGGCTGAGgtaagcggagggggttctttatcgagaaactgaaatagtatttgtgtgtc Alignment from Spaln_nt2Genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaaattagacaggggtccgtcgtagctcatgccctgatgtcacccatagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATAGAGGAGTAAGAACCTTCTTTACAAGCCCCTGTAC---GGAGCCCCGAATCCGGCTACAACAAGGTGAGTTCATACTAGCAATGAGGGGGCTGAGgtaagcggagggggttctttatcgagaaactgaaatagtatttgtgtgtc Alignment from Pairagon GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaaattagacaggggtccgtcgtagctcatgccctgatgtcacccatagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATAGAGGAGTAAGAACCTTCTTTACAAGCCCCTGTAC---GGAGCCCCGAATCCGGCTACAACAAGGTGAGTTCATACTAGCAATGAGGGGGCTGAGgtaagcggagggggttctttatcgagaaactgaaatagtatttgtgtgtc Alignment from Exonerate_protein2genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaaattagacaggggtccgtcgtagctcatgccctgatgtcacccatagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATAGAGGAGTAAGAACCTTCTTTACAAGCCCCTGTACG---GAGCCCCGAATCCGGCTACAACAAGGTGAGTTCATACTAGCAATGAGGGGGCTGAGgtaagcggagggggttctttatcgagaaactgaaatagtatttgtgtgtc Alignment from Exonerate_coding2genome ATAGAACAGTTGAAGCAAAAGGCAGACAAGAGAGTCAGAAGT----GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaaATTAGACAGGGGTCCGTCGTAGCTCATGCCCTGATGTCACCCATAGGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATAGAGGAGTAAGAACCTTCTTTACAAGCCCCTGTACG---GAGCCCCGAATCCGGCTACAACAAGGTGAGTTCATACTAGCAATGAGGGGGCTGAGgtaagcggagggggttctttatcgagaaactgaaatagtatttgtgtgtc Alignment from GeneWise GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaaattagacaggggtccgtcgtagctcatgccctgatgtcacccatagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATAGAGGAGTAAGAACCTTCTTTACAAGCCCCTGTACGGAG---CCCCGAATCCGGCTACAACAAGGTGAGTTCATACTAGCAATGAGGGGGCTGAGgtaagcggagggggttctttatcgagaaactgaaatagtatttgtgtgtc #### Zdhhc6_ID11627_2 --> 0 - 2 Original Alignment GAAAAGTCTCAGGATAGCATGTATCTCCAGTATTGTAAAGTCTGCCAAGCATACAAGGCGCCACGTTCACACCATTGCAGAAAGTGTAACag gtgacaggacttgatatcatttcagaattccaactctcttccctccacagGAAAAGTCTCAGGATAGCACATATCTCCAGTATTGCAAAGTCTGTCAAGCATACAAGGCTCCACGTTCACACCACTGCCGAAAATGCAACaagtaagttgcttcatatgtcaaaccttctatctttactgactctaaccata Alignment from CESAR GAAAAGTCTCAGGATAGCATGTATCTCCAGTATTGTAAAGTCTGCCAAGCATACAAGGCGCCACGTTCACACCATTGCAGAAAGTGTAACag gtgacaggacttgatatcatttcagaattccaactctcttccctccacagGAAAAGTCTCAGGATAGCACATATCTCCAGTATTGCAAAGTCTGTCAAGCATACAAGGCTCCACGTTCACACCACTGCCGAAAATGCAACaagtaagttgcttcatatgtcaaaccttctatctttactgactctaaccata Alignment from Spaln_aa2Genome GAAAAGTCTCAGGATAGCATGTATCTCCAGTATTGTAAAGTCTGCCAAGCATACAAGGCGCCACGTTCACACCATTGCAGAAAGTGTAACAG gtgacaggacttgatatcatttcagaattccaactctcttccctccacagGAAAAGTCTCAGGATAGCACATATCTCCAGTATTGCAAAGTCTGTCAAGCATACAAGGCTCCACGTTCACACCACTGCCGAAAATGCAACAAgtaagttgcttcatatgtcaaaccttctatctttactgactctaaccata Alignment from Spaln_nt2Genome GAAAAGTCTCAGGATAGCATGTATCTCCAGTATTGTAAAGTCTGCCAAGCATACAAGGCGCCACGTTCACACCATTGCAGAAAGTGTAACAG gtgacaggacttgatatcatttcagaattccaactctcttccctccacagGAAAAGTCTCAGGATAGCACATATCTCCAGTATTGCAAAGTCTGTCAAGCATACAAGGCTCCACGTTCACACCACTGCCGAAAATGCAACAAgtaagttgcttcatatgtcaaaccttctatctttactgactctaaccata Alignment from Pairagon GAAAAGTCTCAGGATAGCATGTATCTCCAGTATTGTAAAGTCTGCCAAGCATACAAGGCGCCACGTTCACACCATTGCAGAAAGTGTAACAG gtgacaggacttgatatcatttcagaattccaactctcttccctccacagGAAAAGTCTCAGGATAGCACATATCTCCAGTATTGCAAAGTCTGTCAAGCATACAAGGCTCCACGTTCACACCACTGCCGAAAATGCAACAAgtaagttgcttcatatgtcaaaccttctatctttactgactctaaccata Alignment from Exonerate_protein2genome GAAAAGTCTCAGGATAGCATGTATCTCCAGTATTGTAAAGTCTGCCAAGCATACAAGGCGCCACGTTCACACCATTGCAGAAAGTGTAACAG gtgacaggacttgatatcatttcagaattccaactctcttccctccacagGAAAAGTCTCAGGATAGCACATATCTCCAGTATTGCAAAGTCTGTCAAGCATACAAGGCTCCACGTTCACACCACTGCCGAAAATGCAACAAgtaagttgcttcatatgtcaaaccttctatctttactgactctaaccata Alignment from Exonerate_coding2genome GAAAAGTCTCAGGATAGCATGTATCTCCAGTATTGTAAAGTCTGCCAAGCATACAAGGCGCCACGTTCACACCATTGCAGAAAGTGTAACAG gtgacaggacttgatatcatttcagaattccaactctcttccctccacagGAAAAGTCTCAGGATAGCACATATCTCCAGTATTGCAAAGTCTGTCAAGCATACAAGGCTCCACGTTCACACCACTGCCGAAAATGCAACAAgtaagttgcttcatatgtcaaaccttctatctttactgactctaaccata Alignment from GeneWise GAAAAGTCTCAGGATAGCATGTATCTCCAGTATTGTAAAGTCTGCCAAGCATACAAGGCGCCACGTTCACACCATTGCAGAAAGTGTAACAG gtgacaggacttgatatcatttcagaattccaactctcttccctccacagGAAAAGTCTCAGGATAGCACATATCTCCAGTATTGCAAAGTCTGTCAAGCATACAAGGCTCCACGTTCACACCACTGCCGAAAATGCAACAAgtaagttgcttcatatgtcaaaccttctatctttactgactctaaccata #### Zfand5_ID4880_3 --> 1 - 1 Original Alignment aAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACTACCCCGAAAACAGAGGTGTCAGAGCCAg ttcaaatggcaatttgtatgagtgaaagatgtctctcttatttcctccaggAATGTGCCCGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACCACCCCACAAACTGAAGTAGCAGAGCCAggtgagttttgtaattgtgggtaggaacccaggatgatcaaggtcttctat Alignment from CESAR aAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACTACCCCGAAAACAGAGGTGTCAGAGCCAg ttcaaatggcaatttgtatgagtgaaagatgtctctcttatttcctccaggAATGTGCCCGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACCACCCCACAAACTGAAGTAGCAGAGCCAggtgagttttgtaattgtgggtaggaacccaggatgatcaaggtcttctat Alignment from Spaln_aa2Genome AAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACTACCCCGAAAACAGAGGTGTCAGAGCCAG ttcaaatggcaatttgtatgagtgaaagatgtctctcttatttcctccagGAATGTGCCCGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACCACCCCACAAACTGAAGTAGCAGAGCCAGgtgagttttgtaattgtgggtaggaacccaggatgatcaaggtcttctat Alignment from Spaln_nt2Genome AAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACTACCCCGAAAACAGAGGTGTCAGAGCCAG ttcaaatggcaatttgtatgagtgaaagatgtctctcttatttcctccagGAATGTGCCCGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACCACCCCACAAACTGAAGTAGCAGAGCCAGgtgagttttgtaattgtgggtaggaacccaggatgatcaaggtcttctat Alignment from Pairagon AAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACTACCCCGAAAACAGAGGTGTCAGAGCCAG ttcaaatggcaatttgtatgagtgaaagatgtctctcttatttcctccagGAATGTGCCCGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACCACCCCACAAACTGAAGTAGCAGAGCCAGgtgagttttgtaattgtgggtaggaacccaggatgatcaaggtcttctat Alignment from Exonerate_protein2genome AAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACTACCCCGAAAACAGAGGTGTCAGAGCCAG ttcaaatggcaatttgtatgagtgaaagatgtctctcttatttcctccagGAATGTGCCCGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACCACCCCACAAACTGAAGTAGCAGAGCCAGgtgagttttgtaattgtgggtaggaacccaggatgatcaaggtcttctat Alignment from Exonerate_coding2genome AAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACTACCCCGAAAACAGAGGTGTCAGAGCCAG ttcaaatggcaatttgtatgagtgaaagatgtctctcttatttcctccagGAATGTGCCCGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACCACCCCACAAACTGAAGTAGCAGAGCCAGgtgagttttgtaattgtgggtaggaacccaggatgatcaaggtcttctat Alignment from GeneWise AAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACTACCCCGAAAACAGAGGTGTCAGAGCCAG ttcaaatggcaatttgtatgagtgaaagatgtctctcttatttcctccagGAATGTGCCCGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACCACCCCACAAACTGAAGTAGCAGAGCCAGgtgagttttgtaattgtgggtaggaacccaggatgatcaaggtcttctat #### Zfp91_ID3456_10 --> 2 - 2 Original Alignment acCAGAGGGATTATATCTGTGAATATTGTGCTCGGGCCTTCAAGAGTTCCCACAATCTGGCAGTACACCGGATGATTCATACGGGCGAGAAGCCATTAca gtgtgctaggtaacctggttagtgggatatacattgctttaacctttcagacCAGAGGGATTATATCTGCAAGTATTGTGCTCAGATTTTA---AGTTCACATGTCCTGGCAGTATACCAGATGACCCATACTGGTGAGAGACCATTGcagtgagaaaaaagtcctgtagttggagtcagacattacccctacgaacagt Alignment from CESAR acCAGAGGGATTATATCTGTGAATATTGTGCTCGGGCCTTCAAGAGTTCCCACAATCTGGCAGTACACCGGATGATTCATACGGGCGAGAAGCCATTAca gtgtgctaggtaacctggttagtgggatatacattgctttaacctttcagacCAGAGGGATTATATCTGCAAGTATTGTGCTCAGATTTTA---AGTTCACATGTCCTGGCAGTATACCAGATGACCCATACTGGTGAGAGACCATTGcagtgagaaaaaagtcctgtagttggagtcagacattacccctacgaacagt Alignment from Spaln_aa2Genome ACCAGAGGGATTATATCTGTGAATATTGTGCTCGGGCCTTCAAGAGTTCCCACAATCTGGCAGTACACCGGATGATTCATACGGGCGAGAAGCCATTACA gtgtgctaggtaacctggttagtgggatatacattgctttaacctttcagACCAGAGGGATTATATCTGCAAGTATTGTGCTCAGATTTTA---AGTTCACATGTCCTGGCAGTATACCAGATGACCCATACTGGTGAGAGACCATTGCAgtgagaaaaaagtcctgtagttggagtcagacattacccctacgaacagt Alignment from Spaln_nt2Genome ACCAGAGGGATTATATCTGTGAATATTGTGCTCGGGCCTTCAAGAGTTCCCACAATCTGGCAGTACACCGGATGATTCATACGGGCGAGAAGCCATTACA gtgtgctaggtaacctggttagtgggatatacattgctttaacctttcagACCAGAGGGATTATATCTGCAAGTATTGTGCTCAGATTTT---AAGTTCACATGTCCTGGCAGTATACCAGATGACCCATACTGGTGAGAGACCATTGCAgtgagaaaaaagtcctgtagttggagtcagacattacccctacgaacagt Alignment from Pairagon ACCAGAGGGATTATATCTGTGAATATTGTGCTCGGGCCTTCAAGAGTTCCCACAAT----------------CTGGCAGTACACCGGATGATTCATACGGGCGAGAAGCCATTACA gtgtgctaggtaacctggttagtgggatatacattgctttaacctttcagACCAGAGGGATTATATCTGCAAGTATTGTGCTCAG-------------------ATTTTAAGTTCACATGTCCTGGCAGTATACCAGATGACCCATACTGGTGAGAGACCATTGCAgtgagaaaaaagtcctgtagttggagtcagacattacccctacgaacagt Alignment from Exonerate_protein2genome ACCAGAGGGATTATATCTGTGAATATTGTGCTCGGGCCTTCAAGAGTTCCCACAATCTGGCAGTACACCGGATGATTCATACGGGCGAGAAGCCATTACA gtgtgctaggtaacctggttagtgggatatacattgctttaacctttcagACCAGAGGGATTATATCTGCAAGTATTGTGCTCAGATTTTA---AGTTCACATGTCCTGGCAGTATACCAGATGACCCATACTGGTGAGAGACCATTGCAgtgagaaaaaagtcctgtagttggagtcagacattacccctacgaacagt Alignment from Exonerate_coding2genome ACCAGAGGGATTATATCTGTGAATATTGTGCTCGGGCCTTCAAGAGTTCCCACAATCTGGCAGTACACCGGATGATTCATACGGGCGAGAAGCCATTACA gtgtgctaggtaacctggttagtgggatatacattgctttaacctttcagACCAGAGGGATTATATCTGCAAGTATTGTGCTCAGATTTTA---AGTTCACATGTCCTGGCAGTATACCAGATGACCCATACTGGTGAGAGACCATTGCAgtgagaaaaaagtcctgtagttggagtcagacattacccctacgaacagt Alignment from GeneWise ACCAGAGGGATTATATCTGTGAATATTGTGCTCGGGCCTTCAAGAGTTCCCACAATCTGGCAGTACACCGGATGATTCATACGGGCGAGAAGCCATTACA gtgtgctaggtaacctggttagtgggatatacattgctttaacctttcagACCAGAGGGATTATATCTGCAAGTATTGTGCTCAGATTTTA---AGTTCACATGTCCTGGCAGTATACCAGATGACCCATACTGGTGAGAGACCATTGCAgtgagaaaaaagtcctgtagttggagtcagacattacccctacgaacagt #### Zfyve27_ID8423_5 --> 1 - 1 Original Alignment gTTCTATGGCGCTCTTCTGGGCATGGTGTGCATGCTCTACCTGCTACCGCTCTGCTGGGTCCTCGCCCTGTTAAATAGCACACTCTTCCTGGGAAATGGGGACTTCTTCCGAg ccatccccattgtcacaagttacaagagcatgctattccttgctctacaggTTCTATGATGCTCTACTGGGAATGGTTTGCATGCTATATCTGCTTCCCCTTTGCTGGGTCCTTGCCCTGCTAAATAGTACACTCTTCTTGGGCAATGGGGACTTCTTCCGGggtatgacatgccaccaatattttattggggagcctagaatgaatttacaa Alignment from CESAR gTTCTATGGCGCTCTTCTGGGCATGGTGTGCATGCTCTACCTGCTACCGCTCTGCTGGGTCCTCGCCCTGTTAAATAGCACACTCTTCCTGGGAAATGGGGACTTCTTCCGAg ccatccccattgtcacaagttacaagagcatgctattccttgctctacaggTTCTATGATGCTCTACTGGGAATGGTTTGCATGCTATATCTGCTTCCCCTTTGCTGGGTCCTTGCCCTGCTAAATAGTACACTCTTCTTGGGCAATGGGGACTTCTTCCGGggtatgacatgccaccaatattttattggggagcctagaatgaatttacaa Alignment from Spaln_aa2Genome GTTCTATGGCGCTCTTCTGGGCATGGTGTGCATGCTCTACCTGCTACCGCTCTGCTGGGTCCTCGCCCTGTTAAATAGCACACTCTTCCTGGGAAATGGGGACTTCTTCCGAG ccatccccattgtcacaagttacaagagcatgctattccttgctctacagGTTCTATGATGCTCTACTGGGAATGGTTTGCATGCTATATCTGCTTCCCCTTTGCTGGGTCCTTGCCCTGCTAAATAGTACACTCTTCTTGGGCAATGGGGACTTCTTCCGGGgtatgacatgccaccaatattttattggggagcctagaatgaatttacaa Alignment from Spaln_nt2Genome GTTCTATGGCGCTCTTCTGGGCATGGTGTGCATGCTCTACCTGCTACCGCTCTGCTGGGTCCTCGCCCTGTTAAATAGCACACTCTTCCTGGGAAATGGGGACTTCTTCCGAG ccatccccattgtcacaagttacaagagcatgctattccttgctctacagGTTCTATGATGCTCTACTGGGAATGGTTTGCATGCTATATCTGCTTCCCCTTTGCTGGGTCCTTGCCCTGCTAAATAGTACACTCTTCTTGGGCAATGGGGACTTCTTCCGGGgtatgacatgccaccaatattttattggggagcctagaatgaatttacaa Alignment from Pairagon GTTCTATGGCGCTCTTCTGGGCATGGTGTGCATGCTCTACCTGCTACCGCTCTGCTGGGTCCTCGCCCTGTTAAATAGCACACTCTTCCTGGGAAATGGGGACTTCTTCCGAG ccatccccattgtcacaagttacaagagcatgctattccttgctctacagGTTCTATGATGCTCTACTGGGAATGGTTTGCATGCTATATCTGCTTCCCCTTTGCTGGGTCCTTGCCCTGCTAAATAGTACACTCTTCTTGGGCAATGGGGACTTCTTCCGGGgtatgacatgccaccaatattttattggggagcctagaatgaatttacaa Alignment from Exonerate_protein2genome GTTCTATGGCGCTCTTCTGGGCATGGTGTGCATGCTCTACCTGCTACCGCTCTGCTGGGTCCTCGCCCTGTTAAATAGCACACTCTTCCTGGGAAATGGGGACTTCTTCCGAG ccatccccattgtcacaagttacaagagcatgctattccttgctctacagGTTCTATGATGCTCTACTGGGAATGGTTTGCATGCTATATCTGCTTCCCCTTTGCTGGGTCCTTGCCCTGCTAAATAGTACACTCTTCTTGGGCAATGGGGACTTCTTCCGGGgtatgacatgccaccaatattttattggggagcctagaatgaatttacaa Alignment from Exonerate_coding2genome GTTCTATGGCGCTCTTCTGGGCATGGTGTGCATGCTCTACCTGCTACCGCTCTGCTGGGTCCTCGCCCTGTTAAATAGCACACTCTTCCTGGGAAATGGGGACTTCTTCCGAG ccatccccattgtcacaagttacaagagcatgctattccttgctctacagGTTCTATGATGCTCTACTGGGAATGGTTTGCATGCTATATCTGCTTCCCCTTTGCTGGGTCCTTGCCCTGCTAAATAGTACACTCTTCTTGGGCAATGGGGACTTCTTCCGGGgtatgacatgccaccaatattttattggggagcctagaatgaatttacaa Alignment from GeneWise GTTCTATGGCGCTCTTCTGGGCATGGTGTGCATGCTCTACCTGCTACCGCTCTGCTGGGTCCTCGCCCTGTTAAATAGCACACTCTTCCTGGGAAATGGGGACTTCTTCCGAG ccatccccattgtcacaagttacaagagcatgctattccttgctctacagGTTCTATGATGCTCTACTGGGAATGGTTTGCATGCTATATCTGCTTCCCCTTTGCTGGGTCCTTGCCCTGCTAAATAGTACACTCTTCTTGGGCAATGGGGACTTCTTCCGGGgtatgacatgccaccaatattttattggggagcctagaatgaatttacaa #### Zfyve27_ID8424_6 --> 2 - 0 Original Alignment tgGTGTGTGAGTACAGGGCCTGCCTGCAGCGGAGGATGAACCCCCGGCAGGAAGAGTGTGCCTGTGAGAGCTCAGCACTGCAGGGGGCCGGAGGGAGGGGCCTGCTGGACAGCTCGCCTGCCCCCACACCCACCGAG gacaagttgtgttctacattctctgcctgactatttttctttgtttttagtaGTGTGTGAGTACAGAGCCTGCCTACAATGGAGGATCAATCTACGGCTTGAAGAATATGCATGTGAGTGCTCTGCATTACAAGGGTCTGGAGGGCGAGGCTTGCTGGACAGT------GCT---GCACTAACTGAAgtaagaatggccctgctatcagctcaagaggtgctgccagtctctcatat Alignment from CESAR tgGTGTGTGAGTACAGGGCCTGCCTGCAGCGGAGGATGAACCCCCGGCAGGAAGAGTGTGCCTGTGAGAGCTCAGCACTGCAGGGGGCCGGAGGGAGGGGCCTGCTGGACAGCTCGCCTGCCCCCACACCCACCGAG gacaagttgtgttctacattctctgcctgactatttttctttgtttttagtaGTGTGTGAGTACAGAGCCTGCCTACAATGGAGGATCAATCTACGGCTTGAAGAATATGCATGTGAGTGCTCTGCATTACAAGGGTCTGGAGGGCGAGGCTTGCTGGACAGTGCT---------GCACTAACTGAAgtaagaatggccctgctatcagctcaagaggtgctgccagtctctcatat Alignment from Spaln_aa2Genome TGGTGTGTGAGTACAGGGCCTGCCTGCAGCGGAGGATGAACCCCCGGCAGGAAGAGTGTGCCTGTGAGAGCTCAGCACTGCAGGGGGCCGGAGGGAGGGGCCTGCTGGACAGCTCGCCTGCCCCCACACCCACCGAG gacaagttgtgttctacattctctgcctgactatttttctttgtttttagTAGTGTGTGAGTACAGAGCCTGCCTACAATGGAGGATCAATCTACGGCTTGAAGAATATGCATGTGAGTGCTCTGCATTACAAGGGTCTGGAGGGCGAGGCTTGCTGGACAGTGCT---------GCACTAACTGAAgtaagaatggccctgctatcagctcaagaggtgctgccagtctctcatat Alignment from Spaln_nt2Genome TGGTGTGTGAGTACAGGGCCTGCCTGCAGCGGAGGATGAACCCCCGGCAGGAAGAGTGTGCCTGTGAGAGCTCAGCACTGCAGGGGGCCGGAGGGAGGGGCCTGCTGGACAGCTCGCCTGCCCCCACA gacaagttgtgttctacattctctgcctgactatttttctttgtttttagTAGTGTGTGAGTACAGAGCCTGCCTACAATGGAGGATCAATCTACGGCTTGAAGAATATGCATGTGAGTGCTCTGCATTACAAGGGTCTGGAGGGCGAGGCTTGCTGGACAGTGCTGCACTAACTGAAgtaagaatggccctgctatcagctcaagaggtgctgccagtctctcatat Alignment from Pairagon TGGTGTGTGAGTACAGGGCCTGCCTGCAGCGGAGGATGAACCCCCGGCAGGAAGAGTGTGCCTGTGAGAGCTCAGCACTGCAGGGGGCCGGAGGGAGGGGCCTGCTGGACA gacaagttgtgttctacattctctgcctgactatttttctttgtttttagTAGTGTGTGAGTACAGAGCCTGCCTACAATGGAGGATCAATCTACGGCTTGAAGAATATGCATGTGAGTGCTCTGCATTACAAGGGTCTGGAGGGCGAGGCTTGCTGGACAgtgctgcactaactgaagtaagaatggccctgctatcagctcaagaggtgctgccagtctctcatat Alignment from Exonerate_protein2genome TGGTGTGTGAGTACAGGGCCTGCCTGCAGCGGAGGATGAACCCCCGGCAGGAAGAGTGTGCCTGTGAGAGCTCAGCACTGCAGGGGGCCGGAGGGAGGGGCCTGCTGGACAGCTCGCCTGCCCCCACACCCACCGAG gacaagttgtgttctacattctctgcctgactatttttctttgtttttagTAGTGTGTGAGTACAGAGCCTGCCTACAATGGAGGATCAATCTACGGCTTGAAGAATATGCATGTGAGTGCTCTGCATTACAAGGGTCTGGAGGGCGAGGCTTGCTGGACAGTGCTGCACTA---------ACTGAAgtaagaatggccctgctatcagctcaagaggtgctgccagtctctcatat Alignment from Exonerate_coding2genome TGGTGTGTGAGTACAGGGCCTGCCTGCAGCGGAGGATGAACCCCCGGCAGGAAGAGTGTGCCTGTGAGAGCTCAGCACTGCAGGGGGCCGGAGGGAGGGGCCTGCTGGACAGCTCGCCTGCCCCCACACCCACCGAG gacaagttgtgttctacattctctgcctgactatttttctttgtttttagTAGTGTGTGAGTACAGAGCCTGCCTACAATGGAGGATCAATCTACGGCTTGAAGAATATGCATGTGAGTGCTCTGCATTACAAGGGTCTGGAGGGCGAGGCTTGCTGGACAGTGCTGCACTA---------ACTGAAgtaagaatggccctgctatcagctcaagaggtgctgccagtctctcatat Alignment from GeneWise TGGTGTGTGAGTACAGGGCCTGCCTGCAGCGGAGGATGAACCCCCGGCAGGAAGAGTGTGCCTGTGAGAGCTCAGCACTGCAGGGGGCCGGAGGGAGGGGCCTGCTGGACAGCTCGCCTGCCCCCACACCCACCGAG gacaagttgtgttctacattctctgcctgactatttttctttgtttttagTAGTGTGTGAGTACAGAGCCTGCCTACAATGGAGGATCAATCTACGGCTTGAAGAATATGCATGTGAGTGCTCTGCATTACAAGGGTCTGGAGGGCGAGGCTTGCTGGACAGTGCTGCACTA---------ACTGAAgtaagaatggccctgctatcagctcaagaggtgctgccagtctctcatat #### Zfyve27_ID8425_7 --> 0 - 0 Original Alignment GACCTCACGCCAGGCAGTGTGGAGGAAGCTGAGGAGGCTGAGCCAGATGAGGAGTTCAAAGATGCAATTGAG agagatttccaattctccccccatagtagtgtttccacccttattctcagGACCTTACCCCAGGCAGTGTAGAGCAAGCAGAGGAAGCTGAACCAGATGAGGAGTTCAAGGATGCTATTGAGgtaaccctggcttaccctggcctctctactgaccactgaccacgtcatat Alignment from CESAR GACCTCACGCCAGGCAGTGTGGAGGAAGCTGAGGAGGCTGAGCCAGATGAGGAGTTCAAAGATGCAATTGAG agagatttccaattctccccccatagtagtgtttccacccttattctcagGACCTTACCCCAGGCAGTGTAGAGCAAGCAGAGGAAGCTGAACCAGATGAGGAGTTCAAGGATGCTATTGAGgtaaccctggcttaccctggcctctctactgaccactgaccacgtcatat Alignment from Spaln_aa2Genome GACCTCACGCCAGGCAGTGTGGAGGAAGCTGAGGAGGCTGAGCCAGATGAGGAGTTCAAAGATGCAATTGAG agagatttccaattctccccccatagtagtgtttccacccttattctcagGACCTTACCCCAGGCAGTGTAGAGCAAGCAGAGGAAGCTGAACCAGATGAGGAGTTCAAGGATGCTATTGAGgtaaccctggcttaccctggcctctctactgaccactgaccacgtcatat Alignment from Spaln_nt2Genome GACCTCACGCCAGGCAGTGTGGAGGAAGCTGAGGAGGCTGAGCCAGATGAGGAGTTCAAAGATGCAATTGAG agagatttccaattctccccccatagtagtgtttccacccttattctcagGACCTTACCCCAGGCAGTGTAGAGCAAGCAGAGGAAGCTGAACCAGATGAGGAGTTCAAGGATGCTATTGAGgtaaccctggcttaccctggcctctctactgaccactgaccacgtcatat Alignment from Pairagon GCTCGCCTGCCCCCACACCCACCGAGGACCTCACGCCAGGCAGTGTGGAGGAAGCTGAGGAGGCTGAGCCAGATGAGGAGTTCAAAGATGCAATTGAG agagatttccaattctccccccatagtagtgtttccacccttattctcag--------------------------GACCTTACCCCAGGCAGTGTAGAGCAAGCAGAGGAAGCTGAACCAGATGAGGAGTTCAAGGATGCTATTGAGgtaaccctggcttaccctggcctctctactgaccactgaccacgtcatat Alignment from Exonerate_protein2genome ACCGAGGACCTCACGCCAGGCAGTGTGGAGGAAGCTGAGGAGGCTGAGCCAGATGAGGAGTTCAAAGATGCAATTGAG agagatttccaattctccccccatagtagtgtttccacccttatTCTCAGGACCTTACCCCAGGCAGTGTAGAGCAAGCAGAGGAAGCTGAACCAGATGAGGAGTTCAAGGATGCTATTGAGgtaaccctggcttaccctggcctctctactgaccactgaccacgtcatat Alignment from Exonerate_coding2genome ACCGAGGACCTCACGCCAGGCAGTGTGGAGGAAGCTGAGGAGGCTGAGCCAGATGAGGAGTTCAAAGATGCAATTGAGGAGACCCACCTGGTGGTGCTGGAGGATGAAGAGGGCACCCCGTGCCCAGC agagatttccaattctccccccatagtagtgtttccacccttatTCTCAGGACCTTACCCCAGGCAGTGTAGAGCAAGCAGAGGAAGCTGAACCAGATGAGGAGTTCAAGGATGCTATTGAGGTAACCCTGGCTTACCCTGGCCTCTCTACTGACCACTGACCACGTCATAT Alignment from GeneWise GACCTCACGCCAGGCAGTGTGGAGGAAGCTGAGGAGGCTGAGCCAGATGAGGAGTTCAAAGATGCAATTGAG agagatttccaattctccccccatagtagtgtttccacccttattctcagGACCTTACCCCAGGCAGTGTAGAGCAAGCAGAGGAAGCTGAACCAGATGAGGAGTTCAAGGATGCTATTGAGgtaaccctggcttaccctggcctctctactgaccactgaccacgtcatat #### Zp1_ID3062_10 --> 0 - 1 Original Alignment GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAa cactggcaattgtctatcccagcctaccatggtccctgctgtccctgcagATCTATTTCTTCTGTAGTGCCTCTGCCTGTCACCCTTTGGGGTCTGATACATGCTCTACTACATGTGATTCTGGGATAGCAagtaagaaaaatggattgtattagggcactaattctacttatggttactgt Alignment from CESAR GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAa cactggcaattgtctatcccagcctaccatggtccctgctgtccctgcagATCTATTTCTTCTGTAGTGCCTCTGCCTGTCACCCTTTGGGGTCTGATACATGCTCTACTACATGTGATTCTGGGATAGCAagtaagaaaaatggattgtattagggcactaattctacttatggttactgt Alignment from Spaln_aa2Genome GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAA cactggcaattgtctatcccagcctaccatggtccctgctgtccctgcagATCTATTTCTTCTGTAGTGCCTCTGCCTGTCACCCTTTGGGGTCTGATACATGCTCTACTACATGTGATTCTGGGATAGCAAgtaagaaaaatggattgtattagggcactaattctacttatggttactgt Alignment from Spaln_nt2Genome GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAA cactggcaattgtctatcccagcctaccatggtccctgctgtccctgcagATCTATTTCTTCTGTAGTGCCTCTGCCTGTCACCCTTTGGGGTCTGATACATGCTCTACTACATGTGATTCTGGGATAGCAAgtaagaaaaatggattgtattagggcactaattctacttatggttactgt Alignment from Pairagon GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAA cactggcaattgtctatcccagcctaccatggtccctgctgtccctgcagATCTATTTCTTCTGTAGTGCCTCTGCCTGTCACCCTTTGGGGTCTGATACATGCTCTACTACATGTGATTCTGGGATAGCAAgtaagaaaaatggattgtattagggcactaattctacttatggttactgt Alignment from Exonerate_protein2genome GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAA cactggcaattgtctatcccagcctaccatggtccctgctgtccctgcagATCTATTTCTTCTGTAGTGCCTCTGCCTGTCACCCTTTGGGGTCTGATACATGCTCTACTACATGTGATTCTGGGATAGCAAgtaagaaaaatggattgtattagggcactaattctacttatggttactgt Alignment from Exonerate_coding2genome GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAA cactggcaattgtctatcccagcctaccatggtccctgctgtccctgcagATCTATTTCTTCTGTAGTGCCTCTGCCTGTCACCCTTTGGGGTCTGATACATGCTCTACTACATGTGATTCTGGGATAGCAAgtaagaaaaatggattgtattagggcactaattctacttatggttactgt Alignment from GeneWise GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAA cactggcaattgtctatcccagcctaccatggtccctgctgtccctgcagATCTATTTCTTCTGTAGTGCCTCTGCCTGTCACCCTTTGGGGTCTGATACATGCTCTACTACATGTGATTCTGGGATAGCAAgtaagaaaaatggattgtattagggcactaattctacttatggttactgt #### Zp1_ID3067_5 --> 2 - 0 Original Alignment tcACTCTCCAGTGTTTCAAAAGTGGCTACTTTACCTTGGTCATGTCACAAGAAACAGCCTTGACACATGGAGTCCTGCTAGACAATGTCCACCTGGCCTATGCCCCCAACGGATGCCCCCCTACCCAGAAGACAAGTGCTTTTGTGGTCTTCCATGTCCCTCTCACCCTCTGTGGAACAGCAATCCAG cagggagactttgatgacataacgtcaactacaaatgttaactttaccagtcACACTCCAGTGTTATGAAAGTGGTTACTTTACC---------TCACAAGAGACTGTCTTGACACAAGGTGTCCTGTTAGACAAT------GTGGCCTATGTACCCAACACCTGCCCACCTACCCAAGAGACAAGTGCTTTTGTGGCTTTCCATGTCCCTCTTACCCTTTGTGGAACAGCAATCCAAgtaagtatatcctcttgttagtgtccagcattagcaaggtcctaagactt Alignment from CESAR tcACTCTCCAGTGTTTCAAAAGTGGCTACTTTACCTTGGTCATGTCACAAGAAACAGCCTTGACACATGGAGTCCTGCTAGACAATGTCCACCTGGCCTATGCCCCCAACGGATGCCCCCCTACCCAGAAGACAAGTGCTTTTGTGGTCTTCCATGTCCCTCTCACCCTCTGTGGAACAGCAATCCAG cagggagactttgatgacataacgtcaactacaaatgttaactttaccagtcACACTCCAGTGTTATGAAAGTGGTTACTTTACC---------TCACAAGAGACTGTCTTGACACAAGGTGTCCTGTTAGACAATGTG------GCCTATGTACCCAACACCTGCCCACCTACCCAAGAGACAAGTGCTTTTGTGGCTTTCCATGTCCCTCTTACCCTTTGTGGAACAGCAATCCAAgtaagtatatcctcttgttagtgtccagcattagcaaggtcctaagactt Alignment from Spaln_aa2Genome TCACTCTCCAGTGTTTCAAAAGTGGCTACTTTACCTTGGTCATGTCACAAGAAACAGCCTTGACACATGGAGTCCTGCTAGACAATGTCCACCTGGCCTATGCCCCCAACGGATGCCCCCCTACCCAGAAGACAAGTGCTTTTGTGGTCTTCCATGTCCCTCTCACCCTCTGTGGAACAGCAATCCAG cagggagactttgatgacataacgtcaactacaaatgttaactttaccagTCACACTCCAGTGTTATGAAAGTGGTTACTTTACC---------TCACAAGAGACTGTCTTGACACAAGGTGTCCTGTTAGACAATGTG------GCCTATGTACCCAACACCTGCCCACCTACCCAAGAGACAAGTGCTTTTGTGGCTTTCCATGTCCCTCTTACCCTTTGTGGAACAGCAATCCAAgtaagtatatcctcttgttagtgtccagcattagcaaggtcctaagactt Alignment from Spaln_nt2Genome TCACTCTCCAGTGTTTCAAAAGTGGCTACTTTACCTTGGTCATGTCACAAGAAACAGCCTTGACACATGGAGTCCTGCTAGACAATGTCCACCTGGCCTATGCCCCCAACGGATGCCCCCCTACCCAGAAGACAAGTGCTTTTGTGGTCTTCCATGTCCCTCTCACCCTCTGTGGAACAGCAATCCAG cagggagactttgatgacataacgtcaactacaaatgttaactttaccagTCACACTCCAGTGTTATGAAAGTGGTTACTTTACC---------TCACAAGAGACTGTCTTGACACAAGGTGTCCTGTTAGACAATG------TGGCCTATGTACCCAACACCTGCCCACCTACCCAAGAGACAAGTGCTTTTGTGGCTTTCCATGTCCCTCTTACCCTTTGTGGAACAGCAATCCAAgtaagtatatcctcttgttagtgtccagcattagcaaggtcctaagactt Alignment from Pairagon TCACTCTCCAGTGTTTCAAAAGTGGCTACTTTACCTTGGTCATGTCACAAGAAACAGCCTTGACACATGGAGTCCTGCTAGACAATGTCCACCTGGCCTATGCCCCCAACGGATGCCCCCCTACCCAGAAGACAAGTGCTTTTGTGGTCTTCCATGTCCCTCTCACCCTCTGTGGAACAGCAATCCAG cagggagactttgatgacataacgtcaactacaaatgttaactttaccagTCACACTCCAGTGTTATGAAAGTGGTTACTTTACC---------TCACAAGAGACTGTCTTGACACAAGGTGTCCTGTTAGACAATG------TGGCCTATGTACCCAACACCTGCCCACCTACCCAAGAGACAAGTGCTTTTGTGGCTTTCCATGTCCCTCTTACCCTTTGTGGAACAGCAATCCAAgtaagtatatcctcttgttagtgtccagcattagcaaggtcctaagactt Alignment from Exonerate_protein2genome TCACTCTCCAGTGTTTCAAAAGTGGCTACTTTACCTTGGTCATGTCACAAGAAACAGCCTTGACACATGGAGTCCTGCTAGACAATGTCCACCTGGCCTATGCCCCCAACGGATGCCCCCCTACCCAGAAGACAAGTGCTTTTGTGGTCTTCCATGTCCCTCTCACCCTCTGTGGAACAGCAATCCAG cagggagactttgatgacataacgtcaactacaaatgttaactttaccagTCACACTCCAGTGTTATGAAAGTGGTTACTTTACC---------TCACAAGAGACTGTCTTGACACAAGGTGTCCTGTTAGACAATGTG------GCCTATGTACCCAACACCTGCCCACCTACCCAAGAGACAAGTGCTTTTGTGGCTTTCCATGTCCCTCTTACCCTTTGTGGAACAGCAATCCAAgtaagtatatcctcttgttagtgtccagcattagcaaggtcctaagactt Alignment from Exonerate_coding2genome TCACTCTCCAGTGTTTCAAAAGTGGCTACTTTACCTTGGTCATGTCACAAGAAACAGCCTTGACACATGGAGTCCTGCTAGACAATGTCCACCTGGCCTATGCCCCCAACGGATGCCCCCCTACCCAGAAGACAAGTGCTTTTGTGGTCTTCCATGTCCCTCTCACCCTCTGTGGAACAGCAATCCAG cagggagactttgatgacataacgtcaactacaaatgttaactttaccagTCACACTCCAGTGTTATGAAAGTGGTTACTTTACC---------TCACAAGAGACTGTCTTGACACAAGGTGTCCTGTTAGACAATGTG------GCCTATGTACCCAACACCTGCCCACCTACCCAAGAGACAAGTGCTTTTGTGGCTTTCCATGTCCCTCTTACCCTTTGTGGAACAGCAATCCAAgtaagtatatcctcttgttagtgtccagcattagcaaggtcctaagactt Alignment from GeneWise TCACTCTCCAGTGTTTCAAAAGTGGCTACTTTACCTTGGTCATGTCACAAGAAACAGCCTTGACACATGGAGTCCTGCTAGACAATGTCCACCTGGCCTATGCCCCCAACGGATGCCCCCCTACCCAGAAGACAAGTGCTTTTGTGGTCTTCCATGTCCCTCTCACCCTCTGTGGAACAGCAATCCAG cagggagactttgatgacataacgtcaactacaaatgttaactttaccagTCACACTCCAGTGTTATGAAAGTGGTTACTTTACC---------TCACAAGAGACTGTCTTGACACAAGGTGTCCTGTTAGACAATGTG------GCCTATGTACCCAACACCTGCCCACCTACCCAAGAGACAAGTGCTTTTGTGGCTTTCCATGTCCCTCTTACCCTTTGTGGAACAGCAATCCAAgtaagtatatcctcttgttagtgtccagcattagcaaggtcctaagactt #### Zp1_ID3069_3 --> 0 - 1 Original Alignment GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAg tgctcagcagaagccttatccagcagattctttctctcccctgtctttagGATGGACGTTTCCACCTGAGAGTTTTTGTACAAGCTGTCTTGACAAATAGCCCTGTAGACATAGCACAAGATGTCACACTGATCTGCCCTAAACCAGATCACACCGTGACTCCAGACCCCTATCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTCCACCCTATCCCTGAG---------GCTGGGTCTGGACAT------ATTACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCGCCACCCTCACTAGGACTTGGGCCTACAGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCATGGGAGCTGACTGAGTTAGACTCTGTGggtgaggcaatctaaattttgtatagactgagttttatggccctgtgatca Alignment from CESAR GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAg tgctcagcagaagccttatccagcagattctttctctcccctgtctttagGATGGACGTTTCCACCTGAGAGTTTTTGTACAAGCTGTCTTGACAAATAGCCCTGTAGACATAGCACAAGATGTCACACTGATCTGCCCTAAACCAGATCACACCGTGACTCCAGACCCCTATCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTCCACCCTATCCCTGAG---------GCTGGGTCTGGACAT------ATTACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCGCCACCCTCACTAGGACTTGGGCCTACAGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCATGGGAGCTGACTGAGTTAGACTCTGTGggtgaggcaatctaaattttgtatagactgagttttatggccctgtgatca Alignment from Spaln_aa2Genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG tgctcagcagaagccttatccagcagattctttctctcccctgtctttagGATGGACGTTTCCACCTGAGAGTTTTTGTACAAGCTGTCTTGACAAATAGCCCTGTAGACATAGCACAAGATGTCACACTGATCTGCCCTAAACCAGATCACACCGTGACTCCAGACCCCTATCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTCCACCCTATCCCTGAG---------GCTGGGTCTGGACAT------ATTACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCGCCACCCTCACTAGGACTTGGGCCTACAGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCATGGGAGCTGACTGAGTTAGACTCTGTGGgtgaggcaatctaaattttgtatagactgagttttatggccctgtgatca Alignment from Spaln_nt2Genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG tgctcagcagaagccttatccagcagattctttctctcccctgtctttagGATGGACGTTTCCACCTGAGAGTTTTTGTACAAGCTGTCTTGACAAATAGCCCTGTAGACATAGCACAAGATGTCACACTGATCTGCCCTAAACCAGATCACACCGTGACTCCAGACCCCTATCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTCCACCCTATCCCTGA---------GGCTGGGTCTGGACA------TATTACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCGCCACCCTCACTAGGACTTGGGCCTACAGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCATGGGAGCTGACTGAGTTAGACTCTGTGGgtgaggcaatctaaattttgtatagactgagttttatggccctgtgatca Alignment from Pairagon GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG tgctcagcagaagccttatccagcagattctttctctcccctgtctttagGATGGACGTTTCCACCTGAGAGTTTTTGTACAAGCTGTCTTGACAAATAGCCCTGTAGACATAGCACAAGATGTCACACTGATCTGCCCTAAACCAGATCACACCGTGACTCCAGACCCCTATCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTCCACCCTATCCCTGA---------GGCTGGGTCTGGACATA------TTACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCGCCACCCTCACTAGGACTTGGGCCTACAGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCATGGGAGCTGACTGAGTTAGACTCTGTGGgtgaggcaatctaaattttgtatagactgagttttatggccctgtgatca Alignment from Exonerate_protein2genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG tgctcagcagaagccttatccagcagattctttctctcccctgtctttagGATGGACGTTTCCACCTGAGAGTTTTTGTACAAGCTGTCTTGACAAATAGCCCTGTAGACATAGCACAAGATGTCACACTGATCTGCCCTAAACCAGATCACACCGTGACTCCAGACCCCTATCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTCCACCCTATCCCTGAG---------GCTGGGTCTGGACAT------ATTACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCGCCACCCTCACTAGGACTTGGGCCTACAGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCATGGGAGCTGACTGAGTTAGACTCTGTGGgtgaggcaatctaaattttgtatagactgagttttatggccctgtgatca Alignment from Exonerate_coding2genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG tgctcagcagaagccttatccagcagattctttctctcccctgtctttagGATGGACGTTTCCACCTGAGAGTTTTTGTACAAGCTGTCTTGACAAATAGCCCTGTAGACATAGCACAAGATGTCACACTGATCTGCCCTAAACCAGATCACACCGTGACTCCAGACCCCTATCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTCCACCCTATCCCTGAG---------GCTGGGTCTGGACAT------ATTACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCGCCACCCTCACTAGGACTTGGGCCTACAGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCATGGGAGCTGACTGAGTTAGACTCTGTGGgtgaggcaatctaaattttgtatagactgagttttatggccctgtgatca Alignment from GeneWise GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG tgctcagcagaagccttatccagcagattctttctctcccctgtctttagGATGGACGTTTCCACCTGAGAGTTTTTGTACAAGCTGTCTTGACAAATAGCCCTGTAGACATAGCACAAGATGTCACACTGATCTGCCCTAAACCAGATCACACCGTGACTCCAGACCCCTATCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTCCACCCTATCCCTGAG---------GCTGGGTCTGGACAT------ATTACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCGCCACCCTCACTAGGACTTGGGCCTACAGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCATGGGAGCTGACTGAGTTAGACTCTGTGGgtgaggcaatctaaattttgtatagactgagttttatggccctgtgatca ####