#### 1700017D01Rik_ID3123_5 --> 0 - 1 Original Alignment ATGGCTGGCATGATGCTTCTACAAATTTCTGTCATGTGTGCCATCACAGAGCTGGTTATTGCAATCCTAGTGCTGCACTGGTTCATAACAGCACATAAAATTGAAGAACCCTCAGAAGAAa atttgatctttggacatttggctcaaaggtgccttgccgtctctccacagATGGCTGGCATGATGCTCCTACAAATTTCTGTGATGTGTGCT---ACAGAC---------------CTTATCTTGCAGTGGTTCATTACAACACATAAGATTGAGGAACCATCAGAAGAGagtaagctaaagagaatatggatatttaactacaagtaatttcagatggtg Alignment from CESAR ATGGCTGGCATGATGCTTCTACAAATTTCTGTCATGTGTGCCATCACAGAGCTGGTTATTGCAATCCTAGTGCTGCACTGGTTCATAACAGCACATAAAATTGAAGAACCCTCAGAAGAAa atttgatctttggacatttggctcaaaggtgccttgccgtctctccacagATGGCTGGCATGATGCTCCTACAAATTTCTGTGATGTGTGCT---ACAGACCTTATC---------------TTGCAGTGGTTCATTACAACACATAAGATTGAGGAACCATCAGAAGAGagtaagctaaagagaatatggatatttaactacaagtaatttcagatggtg Alignment from Spaln_aa2Genome ATGGCTGGCATGATGCTTCTACAAATTTCTGTCATGTGTGCCATCACAGAGCTGGTTATTGCAATCCTAGTGCTGCACTGGTTCATAACAGCACATAAAATTGAAGAACCCTCAGAAGAAA atttgatctttggacatttggctcaaaggtgccttgccgtctctccacagATGGCTGGCATGATGCTCCTACAAATTTCTGTGATGTGTGCTACAGAC------------------CTTATCTTGCAGTGGTTCATTACAACACATAAGATTGAGGAACCATCAGAAGAGAgtaagctaaagagaatatggatatttaactacaagtaatttcagatggtg Alignment from Spaln_nt2Genome ATGGCTGGCATGATGCTTCTACAAATTTCTGTCATGTGTGCCATCACAGAGCTGGTTATTGCAATCCTAGTGCTGCACTGGTTCATAACAGCACATAAAATTGAAGAACCCTCAGAAGAAA atttgatctttggacatttggctcaaaggtgccttgccgtctctccacagATGGCTGGCATGATGCTCCTACAAATTTCTGTGATGTGTGC---TACAGA---------------CCTTATCTTGCAGTGGTTCATTACAACACATAAGATTGAGGAACCATCAGAAGAGAgtaagctaaagagaatatggatatttaactacaagtaatttcagatggtg Alignment from Pairagon ATGGCTGGCATGATGCTTCTACAAATTTCTGTCATGTGTGCCATCACAGAGCTGGTTATTGCAATCCTAGTGCTGCACTGGTTCATAACAGCACATAAAATTGAAGAACCCTCAGAAGAAA atttgatctttggacatttggctcaaaggtgccttgccgtctctccacagATGGCTGGCATGATGCTCCTACAAATTTCTGTGATGTGTGCTA------------------CAGACCTTATCTTGCAGTGGTTCATTACAACACATAAGATTGAGGAACCATCAGAAGAGAgtaagctaaagagaatatggatatttaactacaagtaatttcagatggtg Alignment from Exonerate_protein2genome CTACAAATTTCTGTCATGTGTGCCATCACAGAGCTGGTTATTGCAATCCTAGTGCTGCACTGGTTCATAACAGCACATAAAATTGAAGAACCCTCAGAAGAAA atttgatctttggacatttggctcaaaggtgccttgccgtctctccacagATGGCTGGCATGATGCTCCTACAAATTTCTGTGATGTGTGCTACAGACCTTATCTTGCAGTGGTTCATTACAACACATAAGATTGAGGAACCATCAGAAGAGAgtaagctaaagagaatatggatatttaactacaagtaatttcagatggtg Alignment from Exonerate_coding2genome CTACAAATTTCTGTCATGTGTGCCATCACAGAGCTGGTTATTGCAATCCTAGTGCTGCACTGGTTCATAACAGCACATAAAATTGAAGAACCCTCAGAAGAAA atttgatctttggacatttggctcaaaggtgccttgccgtctctccacagATGGCTGGCATGATGCTCCTACAAATTTCTGTGATGTGTGCTACAGACCTTATCTTGCAGTGGTTCATTACAACACATAAGATTGAGGAACCATCAGAAGAGAgtaagctaaagagaatatggatatttaactacaagtaatttcagatggtg Alignment from GeneWise ATGGCTGGCATGATGCTTCTACAAATTTCTGTCATGTGTGCCATCACAGAGCTGGTTATTGCAATCCTAGTGCTGCACTGGTTCATAACAGCACATAAAATTGAAGAACCCTCAGAAGAAA atttgatctttggacatttggctcaaaggtgccttgccgtctctccacagATGGCTGGCATGATGCTCCTACAAATTTCTGTGATGTGTGCTACAGAC------------------CTTATCTTGCAGTGGTTCATTACAACACATAAGATTGAGGAACCATCAGAAGAGAgtaagctaaagagaatatggatatttaactacaagtaatttcagatggtg #### 1700017D01Rik_ID3126_2 --> 0 - 0 Original Alignment GGTGCACAAATAATGCTTGGCCTAATTCACAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAGATATAGCATCGGCCATAAACTTATGTTAGCTAGTATCTGCTACCTGTTTGTGTCTGGAACATTT taaccatcaccttagacggtccccttgcccacttcatcctcaccacttagGGAGCACAAATCATGCTGGGCCTGATAGACAATGCACTGGGGACTCTTTGGCTCTGTTTACACAATCTCGAGGACAAGAAATATGGCATTAGCCATAAGCTGATTTTAGCCAGCATTTGCCACGTATTTGTGTCTGGAACATTTgtgagagaatcaagctattggtgaatcctagatgattgacaaatggcttt Alignment from CESAR GGTGCACAAATAATGCTTGGCCTAATTCACAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAGATATAGCATCGGCCATAAACTTATGTTAGCTAGTATCTGCTACCTGTTTGTGTCTGGAACATTT taaccatcaccttagacggtccccttgcccacttcatcctcaccacttagGGAGCACAAATCATGCTGGGCCTGATAGACAATGCACTGGGGACTCTTTGGCTCTGTTTACACAATCTCGAGGACAAGAAATATGGCATTAGCCATAAGCTGATTTTAGCCAGCATTTGCCACGTATTTGTGTCTGGAACATTTgtgagagaatcaagctattggtgaatcctagatgattgacaaatggcttt Alignment from Spaln_aa2Genome GGTGCACAAATAATGCTTGGCCTAATTCACAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAGATATAGCATCGGCCATAAACTTATGTTAGCTAGTATCTGCTACCTGTTTGTGTCTGGAACATTT taaccatcaccttagacggtccccttgcccacttcatcctcaccacttagGGAGCACAAATCATGCTGGGCCTGATAGACAATGCACTGGGGACTCTTTGGCTCTGTTTACACAATCTCGAGGACAAGAAATATGGCATTAGCCATAAGCTGATTTTAGCCAGCATTTGCCACGTATTTGTGTCTGGAACATTTgtgagagaatcaagctattggtgaatcctagatgattgacaaatggcttt Alignment from Spaln_nt2Genome GGTGCACAAATAATGCTTGGCCTAATTCACAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAGATATAGCATCGGCCATAAACTTATGTTAGCTAGTATCTGCTACCTGTTTGTGTCTGGAACATTT taaccatcaccttagacggtccccttgcccacttcatcctcaccacttagGGAGCACAAATCATGCTGGGCCTGATAGACAATGCACTGGGGACTCTTTGGCTCTGTTTACACAATCTCGAGGACAAGAAATATGGCATTAGCCATAAGCTGATTTTAGCCAGCATTTGCCACGTATTTGTGTCTGGAACATTTgtgagagaatcaagctattggtgaatcctagatgattgacaaatggcttt Alignment from Pairagon GGTGCACAAATAATGCTTGGCCTAATTCACAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAGATATAGCATCGGCCATAAACTTATGTTAGCTAGTATCTGCTACCTGTTTGTGTCTGGAACATTT taaccatcaccttagacggtccccttgcccacttcatcctcaccacttagGGAGCACAAATCATGCTGGGCCTGATAGACAATGCACTGGGGACTCTTTGGCTCTGTTTACACAATCTCGAGGACAAGAAATATGGCATTAGCCATAAGCTGATTTTAGCCAGCATTTGCCACGTATTTGTGTCTGGAACATTTgtgagagaatcaagctattggtgaatcctagatgattgacaaatggcttt Alignment from Exonerate_protein2genome GGTGCACAAATAATGCTTGGCCTAATTCACAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAGATATAGCATCGGCCATAAACTTATGTTAGCTAGTATCTGCTACCTGTTTGTGTCTGGAACATTT taaccatcaccttagacggtccccttgcccacttcatcctcaccacttagGGAGCACAAATCATGCTGGGCCTGATAGACAATGCACTGGGGACTCTTTGGCTCTGTTTACACAATCTCGAGGACAAGAAATATGGCATTAGCCATAAGCTGATTTTAGCCAGCATTTGCCACGTATTTGTGTCTGGAACATTTgtgagagaatcaagctattggtgaatcctagatgattgacaaatggcttt Alignment from Exonerate_coding2genome GGTGCACAAATAATGCTTGGCCTAATTCACAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAGATATAGCATCGGCCATAAACTTATGTTAGCTAGTATCTGCTACCTGTTTGTGTCTGGAACATTT taaccatcaccttagacggtccccttgcccacttcatcctcaccacttagGGAGCACAAATCATGCTGGGCCTGATAGACAATGCACTGGGGACTCTTTGGCTCTGTTTACACAATCTCGAGGACAAGAAATATGGCATTAGCCATAAGCTGATTTTAGCCAGCATTTGCCACGTATTTGTGTCTGGAACATTTgtgagagaatcaagctattggtgaatcctagatgattgacaaatggcttt Alignment from GeneWise GGTGCACAAATAATGCTTGGCCTAATTCACAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAGATATAGCATCGGCCATAAACTTATGTTAGCTAGTATCTGCTACCTGTTTGTGTCTGGAACATTT taaccatcaccttagacggtccccttgcccacttcatcctcaccacttagGGAGCACAAATCATGCTGGGCCTGATAGACAATGCACTGGGGACTCTTTGGCTCTGTTTACACAATCTCGAGGACAAGAAATATGGCATTAGCCATAAGCTGATTTTAGCCAGCATTTGCCACGTATTTGTGTCTGGAACATTTgtgagagaatcaagctattggtgaatcctagatgattgacaaatggcttt #### 1700019N19Rik_ID12797_3 --> 2 - 1 Original Alignment gcTTCATACCATGGCTCAGTTGCCAGGAAAGCTCCAGCGAGGACCGCATGAATCCCTGTGTGAAAGCGTTCCAGGAGAGAACGCAGAGATACAAGGAGGACCAGCAGGGATTAAACTGCTCTGTGGCCAACACCCCACCCCTGAAGCCCATCTGTTCTGAGGACACGGTCCTGTGGGTGTTGCATGAGTATGCCAAGAAGTACCACCCCCTGACTCTGg ggcttagatcaccatagttcagttcagctctgttctttctgggttgccagggTTCATACCATGGCTCAGCTACCAAGAAAGCCCTAGTGAGGATTGCACAAATCCCTGTGTGAAGCTGCTTCAGAAAAGGACTCAGGAATACAAG---GACCAGCAAGGTTTAAACTGG------GCGAATAACCCCCCCCTGAAGCCAATTTGTTCCGAAGGCAGAGTCTTATGGGTGTTGCATGAGTATGCTACAAAGTACCACCCGCTTACTCTTggtatggagctttgactaaccctcacaccatgcatgtgatatactacctgt Alignment from CESAR gcTTCATACCATGGCTCAGTTGCCAGGAAAGCTCCAGCGAGGACCGCATGAATCCCTGTGTGAAAGCGTTCCAGGAGAGAACGCAGAGATACAAGGAGGACCAGCAGGGATTAAACTGCTCTGTGGCCAACACCCCACCCCTGAAGCCCATCTGTTCTGAGGACACGGTCCTGTGGGTGTTGCATGAGTATGCCAAGAAGTACCACCCCCTGACTCTGg ggcttagatcaccatagttcagttcagctctgttctttctgggttgccagggTTCATACCATGGCTCAGCTACCAAGAAAGCCCTAGTGAGGATTGCACAAATCCCTGTGTGAAGCTGCTTCAGAAAAGGACTCAGGAATACAAG---GACCAGCAAGGTTTAAACTGG------GCGAATAACCCCCCCCTGAAGCCAATTTGTTCCGAAGGCAGAGTCTTATGGGTGTTGCATGAGTATGCTACAAAGTACCACCCGCTTACTCTTggtatggagctttgactaaccctcacaccatgcatgtgatatactacctgt Alignment from Spaln_aa2Genome GCTTCATACCATGGCTCAGTTGCCAGGAAAGCTCCAGCGAGGACCGCATGAATCCCTGTGTGAAAGCGTTCCAGGAGAGAACGCAGAGATACAAGGAGGACCAGCAGGGATTAAACTGCTCTGTGGCCAACACCCCACCCCTGAAGCCCATCTGTTCTGAGGACACGGTCCTGTGGGTGTTGCATGAGTATGCCAAGAAGTACCACCCCCTGACTCTGG ggcttagatcaccatagttcagttcagctctgttctttctgggttgccagGGTTCATACCATGGCTCAGCTACCAAGAAAGCCCTAGTGAGGATTGCACAAATCCCTGTGTGAAGCTGCTTCAGAAAAGGACTCAGGAATACAAG---GACCAGCAAGGTTTAAACTGG------GCGAATAACCCCCCCCTGAAGCCAATTTGTTCCGAAGGCAGAGTCTTATGGGTGTTGCATGAGTATGCTACAAAGTACCACCCGCTTACTCTTGgtatggagctttgactaaccctcacaccatgcatgtgatatactacctgt Alignment from Spaln_nt2Genome GCTTCATACCATGGCTCAGTTGCCAGGAAAGCTCCAGCGAGGACCGCATGAATCCCTGTGTGAAAGCGTTCCAGGAGAGAACGCAGAGATACAAGGAGGACCAGCAGGGATTAAACTGCTCTGTGGCCAACACCCCACCCCTGAAGCCCATCTGTTCTGAGGACACGGTCCTGTGGGTGTTGCATGAGTATGCCAAGAAGTACCACCCCCTGACTCTGG ggcttagatcaccatagttcagttcagctctgttctttctgggttgccagGGTTCATACCATGGCTCAGCTACCAAGAAAGCCCTAGTGAGGATTGCACAAATCCCTGTGTGAAGCTGCTTCAGAAAAGGACTCAGGAATACA---AGGACCAGCAAGGTTTAAACTG------GGCGAATAACCCCCCCCTGAAGCCAATTTGTTCCGAAGGCAGAGTCTTATGGGTGTTGCATGAGTATGCTACAAAGTACCACCCGCTTACTCTTGgtatggagctttgactaaccctcacaccatgcatgtgatatactacctgt Alignment from Pairagon GCTTCATACCATGGCTCAGTTGCCAGGAAAGCTCCAGCGAGGACCGCATGAATCCCTGTGTGAAAGCGTTCCAGGAGAGAACGCAGAGATACAAGGAGGACCAGCAGGGATTAAACTGCTCTGTGGCCAACACCCCACCCCTGAAGCCCATCTGTTCTGAGGACACGGTCCTGTGGGTGTTGCATGAGTATGCCAAGAAGTACCACCCCCTGACTCTGG ggcttagatcaccatagttcagttcagctctgttctttctgggttgccagGGTTCATACCATGGCTCAGCTACCAAGAAAGCCCTAGTGAGGATTGCACAAATCCCTGTGTGAAGCTGCTTCAGAAAAGGACTCAGGAATACA---AGGACCAGCAAGGTTTAAACTG------GGCGAATAACCCCCCCCTGAAGCCAATTTGTTCCGAAGGCAGAGTCTTATGGGTGTTGCATGAGTATGCTACAAAGTACCACCCGCTTACTCTTGgtatggagctttgactaaccctcacaccatgcatgtgatatactacctgt Alignment from Exonerate_protein2genome GCTTCATACCATGGCTCAGTTGCCAGGAAAGCTCCAGCGAGGACCGCATGAATCCCTGTGTGAAAGCGTTCCAGGAGAGAACGCAGAGATACAAGGAGGACCAGCAGGGATTAAACTGCTCTGTGGCCAACACCCCACCCCTGAAGCCCATCTGTTCTGAGGACACGGTCCTGTGGGTGTTGCATGAGTATGCCAAGAAGTACCACCCCCTGACTCTGG ggcttagatcaccatagttcagttcagctctgttctttctgggttgccagGGTTCATACCATGGCTCAGCTACCAAGAAAGCCCTAGTGAGGATTGCACAAATCCCTGTGTGAAGCTGCTTCAGAAAAGGACTCAGGAATACAAG---GACCAGCAAGGTTTAAACTGG------GCGAATAACCCCCCCCTGAAGCCAATTTGTTCCGAAGGCAGAGTCTTATGGGTGTTGCATGAGTATGCTACAAAGTACCACCCGCTTACTCTTGgtatggagctttgactaaccctcacaccatgcatgtgatatactacctgt Alignment from Exonerate_coding2genome GCTTCATACCATGGCTCAGTTGCCAGGAAAGCTCCAGCGAGGACCGCATGAATCCCTGTGTGAAAGCGTTCCAGGAGAGAACGCAGAGATACAAGGAGGACCAGCAGGGATTAAACTGCTCTGTGGCCAACACCCCACCCCTGAAGCCCATCTGTTCTGAGGACACGGTCCTGTGGGTGTTGCATGAGTATGCCAAGAAGTACCACCCCCTGACTCTGG ggcttagatcaccatagttcagttcagctctgttctttctgggttgccagGGTTCATACCATGGCTCAGCTACCAAGAAAGCCCTAGTGAGGATTGCACAAATCCCTGTGTGAAGCTGCTTCAGAAAAGGACTCAGGAATACAAG---GACCAGCAAGGTTTAAACTGG------GCGAATAACCCCCCCCTGAAGCCAATTTGTTCCGAAGGCAGAGTCTTATGGGTGTTGCATGAGTATGCTACAAAGTACCACCCGCTTACTCTTGgtatggagctttgactaaccctcacaccatgcatgtgatatactacctgt Alignment from GeneWise GCTTCATACCATGGCTCAGTTGCCAGGAAAGCTCCAGCGAGGACCGCATGAATCCCTGTGTGAAAGCGTTCCAGGAGAGAACGCAGAGATACAAGGAGGACCAGCAGGGATTAAACTGCTCTGTGGCCAACACCCCACCCCTGAAGCCCATCTGTTCTGAGGACACGGTCCTGTGGGTGTTGCATGAGTATGCCAAGAAGTACCACCCCCTGACTCTGG ggcttagatcaccatagttcagttcagctctgttctttctgggttgccagGGTTCATACCATGGCTCAGCTACCAAGAAAGCCCTAGTGAGGATTGCACAAATCCCTGTGTGAAGCTGCTTCAGAAAAGGACTCAGGAATACAAG---GACCAGCAAGGTTTAAACTGG------GCGAATAACCCCCCCCTGAAGCCAATTTGTTCCGAAGGCAGAGTCTTATGGGTGTTGCATGAGTATGCTACAAAGTACCACCCGCTTACTCTTGgtatggagctttgactaaccctcacaccatgcatgtgatatactacctgt #### 1700025F22Rik_ID3133_3 --> 0 - 0 Original Alignment CTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTTCAAGTGTATATTCTACCCTGTGGCAATAT actatcatggaaatgatcctagaactaggtcttagtgaacttgtttttagCTCATTTGGACAATGACCATGAATGCCCTTACTATCTTTGCAACACTCCTCGGTCTATTTTTGACAATAGTTAAAATTATAGTAACTTCGAGTGTATACTCCACTCTGTGGCACTATgtaaggatggctttacgggaagttgtccattataccaatggcctaatatt Alignment from CESAR CTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTTCAAGTGTATATTCTACCCTGTGGCAATAT actatcatggaaatgatcctagaactaggtcttagtgaacttgtttttagCTCATTTGGACAATGACCATGAATGCCCTTACTATCTTTGCAACACTCCTCGGTCTATTTTTGACAATAGTTAAAATTATAGTAACTTCGAGTGTATACTCCACTCTGTGGCACTATgtaaggatggctttacgggaagttgtccattataccaatggcctaatatt Alignment from Spaln_aa2Genome CTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTTCAAGTGTATATTCTACCCTGTGGCAATAT actatcatggaaatgatcctagaactaggtcttagtgaacttgtttttagCTCATTTGGACAATGACCATGAATGCCCTTACTATCTTTGCAACACTCCTCGGTCTATTTTTGACAATAGTTAAAATTATAGTAACTTCGAGTGTATACTCCACTCTGTGGCACTATgtaaggatggctttacgggaagttgtccattataccaatggcctaatatt Alignment from Spaln_nt2Genome CTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTTCAAGTGTATATTCTACCCTGTGGCAATAT actatcatggaaatgatcctagaactaggtcttagtgaacttgtttttagCTCATTTGGACAATGACCATGAATGCCCTTACTATCTTTGCAACACTCCTCGGTCTATTTTTGACAATAGTTAAAATTATAGTAACTTCGAGTGTATACTCCACTCTGTGGCACTATgtaaggatggctttacgggaagttgtccattataccaatggcctaatatt Alignment from Pairagon CTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTTCAAGTGTATATTCTACCCTGTGGCAATAT actatcatggaaatgatcctagaactaggtcttagtgaacttgtttttagCTCATTTGGACAATGACCATGAATGCCCTTACTATCTTTGCAACACTCCTCGGTCTATTTTTGACAATAGTTAAAATTATAGTAACTTCGAGTGTATACTCCACTCTGTGGCACTATgtaaggatggctttacgggaagttgtccattataccaatggcctaatatt Alignment from Exonerate_protein2genome CTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTTCAAGTGTATATTCTACCCTGTGGCAATAT actatcatggaaatgatcctagaactaggtcttagtgaacttgtttttagCTCATTTGGACAATGACCATGAATGCCCTTACTATCTTTGCAACACTCCTCGGTCTATTTTTGACAATAGTTAAAATTATAGTAACTTCGAGTGTATACTCCACTCTGTGGCACTATgtaaggatggctttacgggaagttgtccattataccaatggcctaatatt Alignment from Exonerate_coding2genome CTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTTCAAGTGTATATTCTACCCTGTGGCAATAT actatcatggaaatgatcctagaactaggtcttagtgaacttgtttttagCTCATTTGGACAATGACCATGAATGCCCTTACTATCTTTGCAACACTCCTCGGTCTATTTTTGACAATAGTTAAAATTATAGTAACTTCGAGTGTATACTCCACTCTGTGGCACTATgtaaggatggctttacgggaagttgtccattataccaatggcctaatatt Alignment from GeneWise CTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTTCAAGTGTATATTCTACCCTGTGGCAATAT actatcatggaaatgatcctagaactaggtcttagtgaacttgtttttagCTCATTTGGACAATGACCATGAATGCCCTTACTATCTTTGCAACACTCCTCGGTCTATTTTTGACAATAGTTAAAATTATAGTAACTTCGAGTGTATACTCCACTCTGTGGCACTATgtaaggatggctttacgggaagttgtccattataccaatggcctaatatt #### 1700028P14Rik_ID5187_2 --> 1 - 0 Original Alignment gCACCGTAACAGAGAAGCCTTCCCCAAAGATTATGATATAGAGAGTCTGGAGACGGTGAAAAACCTATGTATGTCAACATACAAGCGATTTGGAAGTGACAGTCCA atccagactgatgcgttttctatgttctacgcttttcttctgtgaactaggCACCGTAACAGAGAAGCTTTCCCCAAGGATTATGATATCGAAAGTCTGGAGATGGTGAAAAACCTATGTATGTCAACATACAAGCAATTTGGAAGTGATAGTCCAgtaagtgaatgctgatgtgttgtcccaaaccactcccactgagtaaacac Alignment from CESAR gCACCGTAACAGAGAAGCCTTCCCCAAAGATTATGATATAGAGAGTCTGGAGACGGTGAAAAACCTATGTATGTCAACATACAAGCGATTTGGAAGTGACAGTCCA atccagactgatgcgttttctatgttctacgcttttcttctgtgaactaggCACCGTAACAGAGAAGCTTTCCCCAAGGATTATGATATCGAAAGTCTGGAGATGGTGAAAAACCTATGTATGTCAACATACAAGCAATTTGGAAGTGATAGTCCAgtaagtgaatgctgatgtgttgtcccaaaccactcccactgagtaaacac Alignment from Spaln_aa2Genome GCACCGTAACAGAGAAGCCTTCCCCAAAGATTATGATATAGAGAGTCTGGAGACGGTGAAAAACCTATGTATGTCAACATACAAGCGATTTGGAAGTGACAGTCCA atccagactgatgcgttttctatgttctacgcttttcttctgtgaactagGCACCGTAACAGAGAAGCTTTCCCCAAGGATTATGATATCGAAAGTCTGGAGATGGTGAAAAACCTATGTATGTCAACATACAAGCAATTTGGAAGTGATAGTCCAgtaagtgaatgctgatgtgttgtcccaaaccactcccactgagtaaacac Alignment from Spaln_nt2Genome GCACCGTAACAGAGAAGCCTTCCCCAAAGATTATGATATAGAGAGTCTGGAGACGGTGAAAAACCTATGTATGTCAACATACAAGCGATTTGGAAGTGACAGTCCA atccagactgatgcgttttctatgttctacgcttttcttctgtgaactagGCACCGTAACAGAGAAGCTTTCCCCAAGGATTATGATATCGAAAGTCTGGAGATGGTGAAAAACCTATGTATGTCAACATACAAGCAATTTGGAAGTGATAGTCCAgtaagtgaatgctgatgtgttgtcccaaaccactcccactgagtaaacac Alignment from Pairagon GCACCGTAACAGAGAAGCCTTCCCCAAAGATTATGATATAGAGAGTCTGGAGACGGTGAAAAACCTATGTATGTCAACATACAAGCGATTTGGAAGTGACAGTCCA atccagactgatgcgttttctatgttctacgcttttcttctgtgaactagGCACCGTAACAGAGAAGCTTTCCCCAAGGATTATGATATCGAAAGTCTGGAGATGGTGAAAAACCTATGTATGTCAACATACAAGCAATTTGGAAGTGATAGTCCAgtaagtgaatgctgatgtgttgtcccaaaccactcccactgagtaaacac Alignment from Exonerate_protein2genome GCACCGTAACAGAGAAGCCTTCCCCAAAGATTATGATATAGAGAGTCTGGAGACGGTGAAAAACCTATGTATGTCAACATACAAGCGATTTGGAAGTGACAGTCCA atccagactgatgcgttttctatgttctacgcttttcttctgtgaactagGCACCGTAACAGAGAAGCTTTCCCCAAGGATTATGATATCGAAAGTCTGGAGATGGTGAAAAACCTATGTATGTCAACATACAAGCAATTTGGAAGTGATAGTCCAgtaagtgaatgctgatgtgttgtcccaaaccactcccactgagtaaacac Alignment from Exonerate_coding2genome GCACCGTAACAGAGAAGCCTTCCCCAAAGATTATGATATAGAGAGTCTGGAGACGGTGAAAAACCTATGTATGTCAACATACAAGCGATTTGGAAGTGACAGTCCA atccagactgatgcgttttctatgttctacgcttttcttctgtgaactagGCACCGTAACAGAGAAGCTTTCCCCAAGGATTATGATATCGAAAGTCTGGAGATGGTGAAAAACCTATGTATGTCAACATACAAGCAATTTGGAAGTGATAGTCCAgtaagtgaatgctgatgtgttgtcccaaaccactcccactgagtaaacac Alignment from GeneWise GCACCGTAACAGAGAAGCCTTCCCCAAAGATTATGATATAGAGAGTCTGGAGACGGTGAAAAACCTATGTATGTCAACATACAAGCGATTTGGAAGTGACAGTCCA atccagactgatgcgttttctatgttctacgcttttcttctgtgaactagGCACCGTAACAGAGAAGCTTTCCCCAAGGATTATGATATCGAAAGTCTGGAGATGGTGAAAAACCTATGTATGTCAACATACAAGCAATTTGGAAGTGATAGTCCAgtaagtgaatgctgatgtgttgtcccaaaccactcccactgagtaaacac #### 1700055N04Rik_ID224_2 --> 1 - 0 Original Alignment gACGGACCCTTTTGAAGAAAAGCTACAGAGGCTGAAGGAGGCCTTCAACACAGGGAAGACAAAGACGGCTAAGTTCAGGGCTGAACAACTGCAGAGCCTGGGCCGCTTCCTGCAGGACAATAGCAAACAGCTTCATGACGCCCTGGATGGAGACCTGGGCAAG ccccactcatcagatgatttgaatacacggtgctactttccttctggcagcATGGATCCATTTGAGGACAAGTTACAACGGCTTAGGGAGGCCTTTAACATGGGGAAAACAAAGATGGCTAAGTGCCGAGCAGAGCAACTGCAGAGCCTGGGCTGCTTTCTGCAAGACAACATTAAGCAGCTACATGATGCATTGGAAGGGGACCTCGGTAGGgtaagctggagggttgttgatggggcagttatcttggctgcatgagggtg Alignment from CESAR gACGGACCCTTTTGAAGAAAAGCTACAGAGGCTGAAGGAGGCCTTCAACACAGGGAAGACAAAGACGGCTAAGTTCAGGGCTGAACAACTGCAGAGCCTGGGCCGCTTCCTGCAGGACAATAGCAAACAGCTTCATGACGCCCTGGATGGAGACCTGGGCAAG ccccactcatcagatgatttgaatacacggtgctactttccttctggcagcATGGATCCATTTGAGGACAAGTTACAACGGCTTAGGGAGGCCTTTAACATGGGGAAAACAAAGATGGCTAAGTGCCGAGCAGAGCAACTGCAGAGCCTGGGCTGCTTTCTGCAAGACAACATTAAGCAGCTACATGATGCATTGGAAGGGGACCTCGGTAGGgtaagctggagggttgttgatggggcagttatcttggctgcatgagggtg Alignment from Spaln_aa2Genome GACGGACCCTTTTGAAGAAAAGCTACAGAGGCTGAAGGAGGCCTTCAACACAGGGAAGACAAAGACGGCTAAGTTCAGGGCTGAACAACTGCAGAGCCTGGGCCGCTTCCTGCAGGACAATAGCAAACAGCTTCATGACGCCCTGGATGGAGACCTGGGCAAG ccccactcatcagatgatttgaatacacggtgctactttccttctggcagCATGGATCCATTTGAGGACAAGTTACAACGGCTTAGGGAGGCCTTTAACATGGGGAAAACAAAGATGGCTAAGTGCCGAGCAGAGCAACTGCAGAGCCTGGGCTGCTTTCTGCAAGACAACATTAAGCAGCTACATGATGCATTGGAAGGGGACCTCGGTAGGgtaagctggagggttgttgatggggcagttatcttggctgcatgagggtg Alignment from Spaln_nt2Genome GACGGACCCTTTTGAAGAAAAGCTACAGAGGCTGAAGGAGGCCTTCAACACAGGGAAGACAAAGACGGCTAAGTTCAGGGCTGAACAACTGCAGAGCCTGGGCCGCTTCCTGCAGGACAATAGCAAACAGCTTCATGACGCCCTGGATGGAGACCTGGGCAAG ccccactcatcagatgatttgaatacacggtgctactttccttctggcagCATGGATCCATTTGAGGACAAGTTACAACGGCTTAGGGAGGCCTTTAACATGGGGAAAACAAAGATGGCTAAGTGCCGAGCAGAGCAACTGCAGAGCCTGGGCTGCTTTCTGCAAGACAACATTAAGCAGCTACATGATGCATTGGAAGGGGACCTCGGTAGGgtaagctggagggttgttgatggggcagttatcttggctgcatgagggtg Alignment from Pairagon GACGGACCCTTTTGAAGAAAAGCTACAGAGGCTGAAGGAGGCCTTCAACACAGGGAAGACAAAGACGGCTAAGTTCAGGGCTGAACAACTGCAGAGCCTGGGCCGCTTCCTGCAGGACAATAGCAAACAGCTTCATGACGCCCTGGATGGAGACCTGGGCAAG ccccactcatcagatgatttgaatacacggtgctactttccttctggcagCATGGATCCATTTGAGGACAAGTTACAACGGCTTAGGGAGGCCTTTAACATGGGGAAAACAAAGATGGCTAAGTGCCGAGCAGAGCAACTGCAGAGCCTGGGCTGCTTTCTGCAAGACAACATTAAGCAGCTACATGATGCATTGGAAGGGGACCTCGGTAGGgtaagctggagggttgttgatggggcagttatcttggctgcatgagggtg Alignment from Exonerate_protein2genome GACGGACCCTTTTGAAGAAAAGCTACAGAGGCTGAAGGAGGCCTTCAACACAGGGAAGACAAAGACGGCTAAGTTCAGGGCTGAACAACTGCAGAGCCTGGGCCGCTTCCTGCAGGACAATAGCAAACAGCTTCATGACGCCCTGGATGGAGACCTGGGCAAG ccccactcatcagatgatttgaatacacggtgctactttccttctggcagCATGGATCCATTTGAGGACAAGTTACAACGGCTTAGGGAGGCCTTTAACATGGGGAAAACAAAGATGGCTAAGTGCCGAGCAGAGCAACTGCAGAGCCTGGGCTGCTTTCTGCAAGACAACATTAAGCAGCTACATGATGCATTGGAAGGGGACCTCGGTAGGgtaagctggagggttgttgatggggcagttatcttggctgcatgagggtg Alignment from Exonerate_coding2genome GACGGACCCTTTTGAAGAAAAGCTACAGAGGCTGAAGGAGGCCTTCAACACAGGGAAGACAAAGACGGCTAAGTTCAGGGCTGAACAACTGCAGAGCCTGGGCCGCTTCCTGCAGGACAATAGCAAACAGCTTCATGACGCCCTGGATGGAGACCTGGGCAAG ccccactcatcagatgatttgaatacacggtgctactttccttctggcagCATGGATCCATTTGAGGACAAGTTACAACGGCTTAGGGAGGCCTTTAACATGGGGAAAACAAAGATGGCTAAGTGCCGAGCAGAGCAACTGCAGAGCCTGGGCTGCTTTCTGCAAGACAACATTAAGCAGCTACATGATGCATTGGAAGGGGACCTCGGTAGGgtaagctggagggttgttgatggggcagttatcttggctgcatgagggtg Alignment from GeneWise TCCACCAAAGGCAAACACCCACGAGCAGATCAGGGGACGGACCCTTTTGAAGAAAAGCTACAGAGGCTGAAGGAGGCCTTCAACACAGGGAAGACAAAGACGGCTAAGTTCAGGGCTGAACAACTGCAGAGCCTGGGCCGCTTCCTGCAGGACAATAGCAAACAGCTTCATGACGCCCTGGATGGAGACCTGGGCAAG ccccactcatcagatgatttgAATACACGGTGCTACTTTCCTTCTGGCAGCATG------GATCCATTTGAGGACAAGTTACAACGGCTTAGGGAGGCCTTTAACATGGGGAAAACAAAGATGGCTAAGTGCCGAGCAGAGCAACTGCAGAGCCTGGGCTGCTTTCTGCAAGACAACATTAAGCAGCTACATGATGCATTGGAAGGGGACCTCGGTAGGgtaagctggagggttgttgatggggcagttatcttggctgcatgagggtg #### 1700055N04Rik_ID227_5 --> 2 - 0 Original Alignment gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG gttgagaggcacttaaaccattatgtgccggcttctgttttcttttttaggaAACTGTGTGGTGCTCAAAAGATCTGAAATTAGCAGGAACACAGAGAAGGTGTTGGCAGAGCTTCCACCTCAGTATCTAGACCAAgtaagtttattttaggtggttaatttggtaaatggtgaagagctgaatga Alignment from CESAR gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG gttgagaggcacttaaaccattatgtgccggcttctgttttcttttttaggaAACTGTGTGGTGCTCAAAAGATCTGAAATTAGCAGGAACACAGAGAAGGTGTTGGCAGAGCTTCCACCTCAGTATCTAGACCAAgtaagtttattttaggtggttaatttggtaaatggtgaagagctgaatga Alignment from Spaln_aa2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG gttgagaggcacttaaaccattatgtgccggcttctgttttcttttttagGAAACTGTGTGGTGCTCAAAAGATCTGAAATTAGCAGGAACACAGAGAAGGTGTTGGCAGAGCTTCCACCTCAGTATCTAGACCAAgtaagtttattttaggtggttaatttggtaaatggtgaagagctgaatga Alignment from Spaln_nt2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG gttgagaggcacttaaaccattatgtgccggcttctgttttcttttttagGAAACTGTGTGGTGCTCAAAAGATCTGAAATTAGCAGGAACACAGAGAAGGTGTTGGCAGAGCTTCCACCTCAGTATCTAGACCAAgtaagtttattttaggtggttaatttggtaaatggtgaagagctgaatga Alignment from Pairagon GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG gttgagaggcacttaaaccattatgtgccggcttctgttttcttttttagGAAACTGTGTGGTGCTCAAAAGATCTGAAATTAGCAGGAACACAGAGAAGGTGTTGGCAGAGCTTCCACCTCAGTATCTAGACCAAgtaagtttattttaggtggttaatttggtaaatggtgaagagctgaatga Alignment from Exonerate_protein2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG gttgagaggcacttaaaccattatgtgccggcttctgttttcttttttagGAAACTGTGTGGTGCTCAAAAGATCTGAAATTAGCAGGAACACAGAGAAGGTGTTGGCAGAGCTTCCACCTCAGTATCTAGACCAAgtaagtttattttaggtggttaatttggtaaatggtgaagagctgaatga Alignment from Exonerate_coding2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG gttgagaggcacttaaaccattatgtgccggcttctgttttcttttttagGAAACTGTGTGGTGCTCAAAAGATCTGAAATTAGCAGGAACACAGAGAAGGTGTTGGCAGAGCTTCCACCTCAGTATCTAGACCAAgtaagtttattttaggtggttaatttggtaaatggtgaagagctgaatga Alignment from GeneWise GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG gttgagaggcacttaaaccattatgtgccggcttctgttttcttttttagGAAACTGTGTGGTGCTCAAAAGATCTGAAATTAGCAGGAACACAGAGAAGGTGTTGGCAGAGCTTCCACCTCAGTATCTAGACCAAgtaagtttattttaggtggttaatttggtaaatggtgaagagctgaatga #### 1700123I01Rik_ID1491_3 --> 0 - 1 Original Alignment GATTCTATCCGTGCAGTCTTGGCA---AACATGGACAGCCTGCAACCCTTTGTTACAGAACACTTCATTGTATTTCCCt accattaaagtctactttagatctccgaaaactctcttgtttttatacagGATTCAATCCTTGCAGTCTTGGCCAACAATATGGACAGTCTGCAACCATTTGTTACCGAACACTTCATTGTATTTCCTtgtgagtttactcatttcatttttgtcaaacccagtgtgacagtagacttg Alignment from CESAR GATTCTATCCGTGCAGTCTTGGCAAAC---ATGGACAGCCTGCAACCCTTTGTTACAGAACACTTCATTGTATTTCCCt accattaaagtctactttagatctccgaaaactctcttgtttttatacagGATTCAATCCTTGCAGTCTTGGCCAACAATATGGACAGTCTGCAACCATTTGTTACCGAACACTTCATTGTATTTCCTtgtgagtttactcatttcatttttgtcaaacccagtgtgacagtagacttg Alignment from Spaln_aa2Genome GATTCTATCCGTGCAGTCTTGGCA---AACATGGACAGCCTGCAACCCTTTGTTACAGAACACTTCATTGTATTTCCCT accattaaagtctactttagatctccgaaaactctcttgtttttatacagGATTCAATCCTTGCAGTCTTGGCCAACAATATGGACAGTCTGCAACCATTTGTTACCGAACACTTCATTGTATTTCCTTgtgagtttactcatttcatttttgtcaaacccagtgtgacagtagacttg Alignment from Spaln_nt2Genome GATTCTATCCGTGCAGTCTTGGCAAACA---TGGACAGCCTGCAACCCTTTGTTACAGAACACTTCATTGTATTTCCCT accattaaagtctactttagatctccgaaaactctcttgtttttatacagGATTCAATCCTTGCAGTCTTGGCCAACAATATGGACAGTCTGCAACCATTTGTTACCGAACACTTCATTGTATTTCCTTgtgagtttactcatttcatttttgtcaaacccagtgtgacagtagacttg Alignment from Pairagon GATTCTATCCGTGCAGTCTTGGCAAAC---ATGGACAGCCTGCAACCCTTTGTTACAGAACACTTCATTGTATTTCCCT accattaaagtctactttagatctccgaaaactctcttgtttttatacagGATTCAATCCTTGCAGTCTTGGCCAACAATATGGACAGTCTGCAACCATTTGTTACCGAACACTTCATTGTATTTCCTTgtgagtttactcatttcatttttgtcaaacccagtgtgacagtagacttg Alignment from Exonerate_protein2genome GATTCTATCCGTGCAGTCTTGGCA---AACATGGACAGCCTGCAACCCTTTGTTACAGAACACTTCATTGTATTTCCCT accattaaagtctactttagatctccgaaaactctcttgtttttatacagGATTCAATCCTTGCAGTCTTGGCCAACAATATGGACAGTCTGCAACCATTTGTTACCGAACACTTCATTGTATTTCCTTgtgagtttactcatttcatttttgtcaaacccagtgtgacagtagacttg Alignment from Exonerate_coding2genome GATTCTATCCGTGCAGTCTTGGCA---AACATGGACAGCCTGCAACCCTTTGTTACAGAACACTTCATTGTATTTCCCT accattaaagtctactttagatctccgaaaactctcttgtttttatacagGATTCAATCCTTGCAGTCTTGGCCAACAATATGGACAGTCTGCAACCATTTGTTACCGAACACTTCATTGTATTTCCTTgtgagtttactcatttcatttttgtcaaacccagtgtgacagtagacttg Alignment from GeneWise GATTCTATCCGTGCAGTCTTGGCAAAC---ATGGACAGCCTGCAACCCTTTGTTACAGAACACTTCATTGTATTTCCCT accattaaagtctactttagatctccgaaaactctcttgtttttatacagGATTCAATCCTTGCAGTCTTGGCCAACAATATGGACAGTCTGCAACCATTTGTTACCGAACACTTCATTGTATTTCCTTgtgagtttactcatttcatttttgtcaaacccagtgtgacagtagacttg #### 1700123I01Rik_ID1494_6 --> 0 - 2 Original Alignment GTCCTAGCTGAGACGGAAGCAGAAGAAGCCACAATGAGGAAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCACACag ctagacccaagatctgaaattagtacttgtgtctctttcctgattttcagGTCCTAGCGGAAACAAAAGCAAAAGAAGCAACAAAGAGGGAATGGAAGCGCAGACTCATGGAAGAGCCCAGCTCCCCAAGCAGGCAAGGGTCTTACaggtaattggtaggagggtgattggtacttcaggtaggttatgacgccctag Alignment from CESAR GTCCTAGCTGAGACGGAAGCAGAAGAAGCCACAATGAGGAAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCACACag ctagacccaagatctgaaattagtacttgtgtctctttcctgattttcagGTCCTAGCGGAAACAAAAGCAAAAGAAGCAACAAAGAGGGAATGGAAGCGCAGACTCATGGAAGAGCCCAGCTCCCCAAGCAGGCAAGGGTCTTACaggtaattggtaggagggtgattggtacttcaggtaggttatgacgccctag Alignment from Spaln_aa2Genome GTCCTAGCTGAGACGGAAGCAGAAGAAGCCACAATGAGGAAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCACACAG ctagacccaagatctgaaattagtacttgtgtctctttcctgattttcagGTCCTAGCGGAAACAAAAGCAAAAGAAGCAACAAAGAGGGAATGGAAGCGCAGACTCATGGAAGAGCCCAGCTCCCCAAGCAGGCAAGGGTCTTACAGgtaattggtaggagggtgattggtacttcaggtaggttatgacgccctag Alignment from Spaln_nt2Genome GTCCTAGCTGAGACGGAAGCAGAAGAAGCCACAATGAGGAAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCACACAG ctagacccaagatctgaaattagtacttgtgtctctttcctgattttcagGTCCTAGCGGAAACAAAAGCAAAAGAAGCAACAAAGAGGGAATGGAAGCGCAGACTCATGGAAGAGCCCAGCTCCCCAAGCAGGCAAGGGTCTTACAGgtaattggtaggagggtgattggtacttcaggtaggttatgacgccctag Alignment from Pairagon GTCCTAGCTGAGACGGAAGCAGAAGAAGCCACAATGAGGAAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCACACAG ctagacccaagatctgaaattagtacttgtgtctctttcctgattttcagGTCCTAGCGGAAACAAAAGCAAAAGAAGCAACAAAGAGGGAATGGAAGCGCAGACTCATGGAAGAGCCCAGCTCCCCAAGCAGGCAAGGGTCTTACAGgtaattggtaggagggtgattggtacttcaggtaggttatgacgccctag Alignment from Exonerate_protein2genome GTCCTAGCTGAGACGGAAGCAGAAGAAGCCACAATGAGGAAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCACACAG ctagacccaagatctgaaattagtacttgtgtctctttcctgattttcagGTCCTAGCGGAAACAAAAGCAAAAGAAGCAACAAAGAGGGAATGGAAGCGCAGACTCATGGAAGAGCCCAGCTCCCCAAGCAGGCAAGGGTCTTACAGgtaattggtaggagggtgattggtacttcaggtaggttatgacgccctag Alignment from Exonerate_coding2genome GTCCTAGCTGAGACGGAAGCAGAAGAAGCCACAATGAGGAAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCACACAG ctagacccaagatctgaaattagtacttgtgtctctttcctgattttcagGTCCTAGCGGAAACAAAAGCAAAAGAAGCAACAAAGAGGGAATGGAAGCGCAGACTCATGGAAGAGCCCAGCTCCCCAAGCAGGCAAGGGTCTTACAGgtaattggtaggagggtgattggtacttcaggtaggttatgacgccctag Alignment from GeneWise GTCCTAGCTGAGACGGAAGCAGAAGAAGCCACAATGAGGAAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCACACAG ctagacccaagatctgaaattagtacttgtgtctctttcctgattttcagGTCCTAGCGGAAACAAAAGCAAAAGAAGCAACAAAGAGGGAATGGAAGCGCAGACTCATGGAAGAGCCCAGCTCCCCAAGCAGGCAAGGGTCTTACAGgtaattggtaggagggtgattggtacttcaggtaggttatgacgccctag #### 2410127L17Rik_ID4446_2 --> 1 - 0 Original Alignment cACCAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCCCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTCGAAAATAAAGAATATGGAGAAGAT gagaaaaagagtttaactgtcaaactcatcccctcccccacaccccacagtACTAGCATGCATGAACGAGTGAACAGAACAGAAAGGCAGTTTCGGTCACTCCCAGACAACCAACAGAAACTGCTTCCTCAATTTCCTCTTCACTTGGACAAGATCCGCAAATGCATTGACCATAATCAAGAAATACTACTGACCATTGTGAATGATTGCATACATATGGTTGAAAATAAAGAACATGGAGAAGATgtaagttgtattgtctctattgttgttctcaatgcgctgcaataagggtt Alignment from CESAR cACCAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCCCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTCGAAAATAAAGAATATGGAGAAGAT gagaaaaagagtttaactgtcaaactcatcccctcccccacaccccacagtACTAGCATGCATGAACGAGTGAACAGAACAGAAAGGCAGTTTCGGTCACTCCCAGACAACCAACAGAAACTGCTTCCTCAATTTCCTCTTCACTTGGACAAGATCCGCAAATGCATTGACCATAATCAAGAAATACTACTGACCATTGTGAATGATTGCATACATATGGTTGAAAATAAAGAACATGGAGAAGATgtaagttgtattgtctctattgttgttctcaatgcgctgcaataagggtt Alignment from Spaln_aa2Genome CACCAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCCCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTCGAAAATAAAGAATATGGAGAAGAT gagaaaaagagtttaactgtcaaactcatcccctcccccacaccccacagTACTAGCATGCATGAACGAGTGAACAGAACAGAAAGGCAGTTTCGGTCACTCCCAGACAACCAACAGAAACTGCTTCCTCAATTTCCTCTTCACTTGGACAAGATCCGCAAATGCATTGACCATAATCAAGAAATACTACTGACCATTGTGAATGATTGCATACATATGGTTGAAAATAAAGAACATGGAGAAGATgtaagttgtattgtctctattgttgttctcaatgcgctgcaataagggtt Alignment from Spaln_nt2Genome CACCAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCCCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTCGAAAATAAAGAATATGGAGAAGAT gagaaaaagagtttaactgtcaaactcatcccctcccccacaccccacagTACTAGCATGCATGAACGAGTGAACAGAACAGAAAGGCAGTTTCGGTCACTCCCAGACAACCAACAGAAACTGCTTCCTCAATTTCCTCTTCACTTGGACAAGATCCGCAAATGCATTGACCATAATCAAGAAATACTACTGACCATTGTGAATGATTGCATACATATGGTTGAAAATAAAGAACATGGAGAAGATgtaagttgtattgtctctattgttgttctcaatgcgctgcaataagggtt Alignment from Pairagon CACCAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCCCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTCGAAAATAAAGAATATGGAGAAGAT gagaaaaagagtttaactgtcaaactcatcccctcccccacaccccacagTACTAGCATGCATGAACGAGTGAACAGAACAGAAAGGCAGTTTCGGTCACTCCCAGACAACCAACAGAAACTGCTTCCTCAATTTCCTCTTCACTTGGACAAGATCCGCAAATGCATTGACCATAATCAAGAAATACTACTGACCATTGTGAATGATTGCATACATATGGTTGAAAATAAAGAACATGGAGAAGATgtaagttgtattgtctctattgttgttctcaatgcgctgcaataagggtt Alignment from Exonerate_protein2genome CACCAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCCCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTCGAAAATAAAGAATATGGAGAAGAT gagaaaaagagtttaactgtcaaactcatcccctcccccacaccccacagTACTAGCATGCATGAACGAGTGAACAGAACAGAAAGGCAGTTTCGGTCACTCCCAGACAACCAACAGAAACTGCTTCCTCAATTTCCTCTTCACTTGGACAAGATCCGCAAATGCATTGACCATAATCAAGAAATACTACTGACCATTGTGAATGATTGCATACATATGGTTGAAAATAAAGAACATGGAGAAGATgtaagttgtattgtctctattgttgttctcaatgcgctgcaataagggtt Alignment from Exonerate_coding2genome AAGGTCATCAACGCGTTCCGCTACTACGGCACCAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCCCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTCGAAAATAAAGAATATGGAGAAGAT gagaaaaagagtttaactgtcAAACTCATCCCCTCCCCCACACCCCACAGTACTAGCATGCATGAACGAGTGAACAGAACAGAAAGGCAGTTTCGGTCACTCCCAGACAACCAACAGAAACTGCTTCCTCAATTTCCTCTTCACTTGGACAAGATCCGCAAATGCATTGACCATAATCAAGAAATACTACTGACCATTGTGAATGATTGCATACATATGGTTGAAAATAAAGAACATGGAGAAGATgtaagttgtattgtctctattgttgttctcaatgcgctgcaataagggtt Alignment from GeneWise CACCAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCCCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTCGAAAATAAAGAATATGGAGAAGAT gagaaaaagagtttaactgtcaaactcatcccctcccccacaccccacagTACTAGCATGCATGAACGAGTGAACAGAACAGAAAGGCAGTTTCGGTCACTCCCAGACAACCAACAGAAACTGCTTCCTCAATTTCCTCTTCACTTGGACAAGATCCGCAAATGCATTGACCATAATCAAGAAATACTACTGACCATTGTGAATGATTGCATACATATGGTTGAAAATAAAGAACATGGAGAAGATgtaagttgtattgtctctattgttgttctcaatgcgctgcaataagggtt #### 2410127L17Rik_ID4451_6 --> 2 - 1 Original Alignment atGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGATTATATTGATACAATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTg attgtgtcattagtacaaatacccatatttttttttttaattctttccagatGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGAGTACATTGATACCATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTggtaagtgcttgtactttctaagtaagggtggtcaccaagagaaatacgta Alignment from CESAR atGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGATTATATTGATACAATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTg attgtgtcattagtacaaatacccatatttttttttttaattctttccagatGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGAGTACATTGATACCATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTggtaagtgcttgtactttctaagtaagggtggtcaccaagagaaatacgta Alignment from Spaln_aa2Genome ATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGATTATATTGATACAATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTG attgtgtcattagtacaaatacccatatttttttttttaattctttccagATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGAGTACATTGATACCATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTGgtaagtgcttgtactttctaagtaagggtggtcaccaagagaaatacgta Alignment from Spaln_nt2Genome ATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGATTATATTGATACAATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTG attgtgtcattagtacaaatacccatatttttttttttaattctttccagATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGAGTACATTGATACCATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTGgtaagtgcttgtactttctaagtaagggtggtcaccaagagaaatacgta Alignment from Pairagon ATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGATTATATTGATACAATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTG attgtgtcattagtacaaatacccatatttttttttttaattctttccagATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGAGTACATTGATACCATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTGgtaagtgcttgtactttctaagtaagggtggtcaccaagagaaatacgta Alignment from Exonerate_protein2genome ATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGATTATATTGATACAATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTG attgtgtcattagtacaaatacccatatttttttttttaattctttccagATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGAGTACATTGATACCATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTGgtaagtgcttgtactttctaagtaagggtggtcaccaagagaaatacgta Alignment from Exonerate_coding2genome ATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGATTATATTGATACAATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTG attgtgtcattagtacaaatacccatatttttttttttaattctttccagATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGAGTACATTGATACCATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTGgtaagtgcttgtactttctaagtaagggtggtcaccaagagaaatacgta Alignment from GeneWise ATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGATTATATTGATACAATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTG attgtgtcattagtacaaatacccatatttttttttttaattctttccagATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGAGTACATTGATACCATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTGgtaagtgcttgtactttctaagtaagggtggtcaccaagagaaatacgta #### 2410127L17Rik_ID4452_7 --> 2 - 0 Original Alignment gtCCTCTACTATACCATTTTGAAAATCTGGCAAATGAACTGTCTATAGAATTGAGCTATGAGGATATTAAAAATGTTGTTCTTCAGTATGGATTTCAGCTAGAG ccaatattatcatcaataactcaagttgcccctgctctctttctccacaggcCCATTATTATACCATTTTGAAAACCTGGCAAATGAACTGTCAATAGAGTTGAGTTATGAGGATATTAAAAATGTTGTTGTTCAGTATGGATTTAAGCTAGAGgtgaggcagaccaaagaccttaagcagattaatacttaggtcccgaagtt Alignment from CESAR gtCCTCTACTATACCATTTTGAAAATCTGGCAAATGAACTGTCTATAGAATTGAGCTATGAGGATATTAAAAATGTTGTTCTTCAGTATGGATTTCAGCTAGAG ccaatattatcatcaataactcaagttgcccctgctctctttctccacaggcCCATTATTATACCATTTTGAAAACCTGGCAAATGAACTGTCAATAGAGTTGAGTTATGAGGATATTAAAAATGTTGTTGTTCAGTATGGATTTAAGCTAGAGgtgaggcagaccaaagaccttaagcagattaatacttaggtcccgaagtt Alignment from Spaln_aa2Genome GTCCTCTACTATACCATTTTGAAAATCTGGCAAATGAACTGTCTATAGAATTGAGCTATGAGGATATTAAAAATGTTGTTCTTCAGTATGGATTTCAGCTAGAG ccaatattatcatcaataactcaagttgcccctgctctctttctccacagGCCCATTATTATACCATTTTGAAAACCTGGCAAATGAACTGTCAATAGAGTTGAGTTATGAGGATATTAAAAATGTTGTTGTTCAGTATGGATTTAAGCTAGAGgtgaggcagaccaaagaccttaagcagattaatacttaggtcccgaagtt Alignment from Spaln_nt2Genome GTCCTCTACTATACCATTTTGAAAATCTGGCAAATGAACTGTCTATAGAATTGAGCTATGAGGATATTAAAAATGTTGTTCTTCAGTATGGATTTCAGCTAGAG ccaatattatcatcaataactcaagttgcccctgctctctttctccacagGCCCATTATTATACCATTTTGAAAACCTGGCAAATGAACTGTCAATAGAGTTGAGTTATGAGGATATTAAAAATGTTGTTGTTCAGTATGGATTTAAGCTAGAGgtgaggcagaccaaagaccttaagcagattaatacttaggtcccgaagtt Alignment from Pairagon GTCCTCTACTATACCATTTTGAAAATCTGGCAAATGAACTGTCTATAGAATTGAGCTATGAGGATATTAAAAATGTTGTTCTTCAGTATGGATTTCAGCTAGAG ccaatattatcatcaataactcaagttgcccctgctctctttctccacagGCCCATTATTATACCATTTTGAAAACCTGGCAAATGAACTGTCAATAGAGTTGAGTTATGAGGATATTAAAAATGTTGTTGTTCAGTATGGATTTAAGCTAGAGgtgaggcagaccaaagaccttaagcagattaatacttaggtcccgaagtt Alignment from Exonerate_protein2genome GTCCTCTACTATACCATTTTGAAAATCTGGCAAATGAACTGTCTATAGAATTGAGCTATGAGGATATTAAAAATGTTGTTCTTCAGTATGGATTTCAGCTAGAG ccaatattatcatcaataactcaagttgcccctgctctctttctccacagGCCCATTATTATACCATTTTGAAAACCTGGCAAATGAACTGTCAATAGAGTTGAGTTATGAGGATATTAAAAATGTTGTTGTTCAGTATGGATTTAAGCTAGAGgtgaggcagaccaaagaccttaagcagattaatacttaggtcccgaagtt Alignment from Exonerate_coding2genome GTCCTCTACTATACCATTTTGAAAATCTGGCAAATGAACTGTCTATAGAATTGAGCTATGAGGATATTAAAAATGTTGTTCTTCAGTATGGATTTCAGCTAGAG ccaatattatcatcaataactcaagttgcccctgctctctttctccacagGCCCATTATTATACCATTTTGAAAACCTGGCAAATGAACTGTCAATAGAGTTGAGTTATGAGGATATTAAAAATGTTGTTGTTCAGTATGGATTTAAGCTAGAGgtgaggcagaccaaagaccttaagcagattaatacttaggtcccgaagtt Alignment from GeneWise GTCCTCTACTATACCATTTTGAAAATCTGGCAAATGAACTGTCTATAGAATTGAGCTATGAGGATATTAAAAATGTTGTTCTTCAGTATGGATTTCAGCTAGAG ccaatattatcatcaataactcaagttgcccctgctctctttctccacagGCCCATTATTATACCATTTTGAAAACCTGGCAAATGAACTGTCAATAGAGTTGAGTTATGAGGATATTAAAAATGTTGTTGTTCAGTATGGATTTAAGCTAGAGgtgaggcagaccaaagaccttaagcagattaatacttaggtcccgaagtt #### 4430402I18Rik_ID6181_9 --> 0 - 2 Original Alignment GTTATCCGAGAGCCAGATGAGCGGATTGTCTTAAAGAGCCAGCCACCACCACCTGTAGATTCAAGTGAGTCCAGAAAGCCCTCGCTCAGTCACCAAGGAGATGCCAGTTTGCACACAGAAACTTCAGTTACCACCTCACAACTCTCCAGACCTCCCAGCCCTCTGAATCAACCTCTTCTCCAAGAAag gataatttgcttttgctgcacataaaaattcttcttttttgtgaaactagGTCATCCAAGAGCCGGATGAGCAGATTGTCCTAAAGAGCCAG---CCACCACCAGTGGATTCAAGCGAATCCAGAAAACCTTCCCTGAGTCATCAAGGTGATGCGCGTTTGCACACAGAAACTTCGGTTTCCACCTTACAACTGTCAAGACCCCCCAGCCCTCTGAATCGACCTCTTCTGCAAGAAaggtaagtatctggtatcacactctaaggatccgttgtaattcctaactcca Alignment from CESAR GTTATCCGAGAGCCAGATGAGCGGATTGTCTTAAAGAGCCAGCCACCACCACCTGTAGATTCAAGTGAGTCCAGAAAGCCCTCGCTCAGTCACCAAGGAGATGCCAGTTTGCACACAGAAACTTCAGTTACCACCTCACAACTCTCCAGACCTCCCAGCCCTCTGAATCAACCTCTTCTCCAAGAAag gataatttgcttttgctgcacataaaaattcttcttttttgtgaaactagGTCATCCAAGAGCCGGATGAGCAGATTGTCCTAAAGAGCCAGCCACCACCA---GTGGATTCAAGCGAATCCAGAAAACCTTCCCTGAGTCATCAAGGTGATGCGCGTTTGCACACAGAAACTTCGGTTTCCACCTTACAACTGTCAAGACCCCCCAGCCCTCTGAATCGACCTCTTCTGCAAGAAaggtaagtatctggtatcacactctaaggatccgttgtaattcctaactcca Alignment from Spaln_aa2Genome GTTATCCGAGAGCCAGATGAGCGGATTGTCTTAAAGAGCCAGCCACCACCACCTGTAGATTCAAGTGAGTCCAGAAAGCCCTCGCTCAGTCACCAAGGAGATGCCAGTTTGCACACAGAAACTTCAGTTACCACCTCACAACTCTCCAGACCTCCCAGCCCTCTGAATCAACCTCTTCTCCAAGAAAG gataatttgcttttgctgcacataaaaattcttcttttttgtgaaactagGTCATCCAAGAGCCGGATGAGCAGATTGTCCTAAAGAGCCAG---CCACCACCAGTGGATTCAAGCGAATCCAGAAAACCTTCCCTGAGTCATCAAGGTGATGCGCGTTTGCACACAGAAACTTCGGTTTCCACCTTACAACTGTCAAGACCCCCCAGCCCTCTGAATCGACCTCTTCTGCAAGAAAGgtaagtatctggtatcacactctaaggatccgttgtaattcctaactcca Alignment from Spaln_nt2Genome GTTATCCGAGAGCCAGATGAGCGGATTGTCTTAAAGAGCCAGCCACCACCACCTGTAGATTCAAGTGAGTCCAGAAAGCCCTCGCTCAGTCACCAAGGAGATGCCAGTTTGCACACAGAAACTTCAGTTACCACCTCACAACTCTCCAGACCTCCCAGCCCTCTGAATCAACCTCTTCTCCAAGAAAG gataatttgcttttgctgcacataaaaattcttcttttttgtgaaactagGTCATCCAAGAGCCGGATGAGCAGATTGTCCTAAAGAGCCAG---CCACCACCAGTGGATTCAAGCGAATCCAGAAAACCTTCCCTGAGTCATCAAGGTGATGCGCGTTTGCACACAGAAACTTCGGTTTCCACCTTACAACTGTCAAGACCCCCCAGCCCTCTGAATCGACCTCTTCTGCAAGAAAGgtaagtatctggtatcacactctaaggatccgttgtaattcctaactcca Alignment from Pairagon GTTATCCGAGAGCCAGATGAGCGGATTGTCTTAAAGAGCCAGCCACCACCACCTGTAGATTCAAGTGAGTCCAGAAAGCCCTCGCTCAGTCACCAAGGAGATGCCAGTTTGCACACAGAAACTTCAGTTACCACCTCACAACTCTCCAGACCTCCCAGCCCTCTGAATCAACCTCTTCTCCAAGAAAG gataatttgcttttgctgcacataaaaattcttcttttttgtgaaactagGTCATCCAAGAGCCGGATGAGCAGATTGTCCTAAAGAGCCAGCCACCACCA---GTGGATTCAAGCGAATCCAGAAAACCTTCCCTGAGTCATCAAGGTGATGCGCGTTTGCACACAGAAACTTCGGTTTCCACCTTACAACTGTCAAGACCCCCCAGCCCTCTGAATCGACCTCTTCTGCAAGAAAGgtaagtatctggtatcacactctaaggatccgttgtaattcctaactcca Alignment from Exonerate_protein2genome GTTATCCGAGAGCCAGATGAGCGGATTGTCTTAAAGAGCCAGCCACCACCACCTGTAGATTCAAGTGAGTCCAGAAAGCCCTCGCTCAGTCACCAAGGAGATGCCAGTTTGCACACAGAAACTTCAGTTACCACCTCACAACTCTCCAGACCTCCCAGCCCTCTGAATCAACCTCTTCTCCAAGAAAG gataatttgcttttgctgcacataaaaattcttcttttttgtgaaactagGTCATCCAAGAGCCGGATGAGCAGATTGTCCTAAAGAGCCAG---CCACCACCAGTGGATTCAAGCGAATCCAGAAAACCTTCCCTGAGTCATCAAGGTGATGCGCGTTTGCACACAGAAACTTCGGTTTCCACCTTACAACTGTCAAGACCCCCCAGCCCTCTGAATCGACCTCTTCTGCAAGAAAGgtaagtatctggtatcacactctaaggatccgttgtaattcctaactcca Alignment from Exonerate_coding2genome gataatttgcttttgctgcacataaaaattcttcttttttgtgaaactaggtcatccaagagccggatgagcagattgtcctaaagagccagccaccaccagtggattcaagcgaatccagaaaaccttccctgagtcatcaaggtgatgcgcgtttgcacacagaaacttcggtttccaccttacaactgtcaagaccccccagccctctgaatcgacctcttctgcaagaaaggtaagtatctggtatcacactctaaggatccgttgtaattcctaactcca Alignment from GeneWise ---ATCCGAGAGCCAGATGAGCGGATTGTCTTAAAGAGCCAGCCACCACCACCTGTAGATTCAAGTGAGTCCAGAAAGCCCTCGCTCAGTCACCAAGGAGATGCCAGTTTGCACACAGAAACTTCAGTTACCACCTCACAACTCTCCAGACCTCCCAGCCCTCTGAATCAACCTCTTCTCCAAGAAAG gataatttgcttttgctgcacataaaaattcttcttttttgtgaaactagGTCATCCAAGAGCCGGATGAGCAGATTGTCCTAAAGAGCCAGCCACCACCA---GTGGATTCAAGCGAATCCAGAAAACCTTCCCTGAGTCATCAAGGTGATGCGCGTTTGCACACAGAAACTTCGGTTTCCACCTTACAACTGTCAAGACCCCCCAGCCCTCTGAATCGACCTCTTCTGCAAGAAAGgtaagtatctggtatcacactctaaggatccgttgtaattcctaactcca #### 4430402I18Rik_ID6182_8 --> 2 - 0 Original Alignment caTCTTCTCTTGACAGCCTGGAGGCGAACATAAAG aagtgccaaattaaagctcctgcactggttctatcttttttttttttaagcaCCTTCACTTGATAGCCTTGAGGCAAACATAAAGgtaagaacccaagcacaacacttacctcatgacagctctaaacttatgaa Alignment from CESAR caTCTTCTCTTGACAGCCTGGAGGCGAACATAAAG aagtgccaaattaaagctcctgcactggttctatcttttttttttttaagcaCCTTCACTTGATAGCCTTGAGGCAAACATAAAGgtaagaacccaagcacaacacttacctcatgacagctctaaacttatgaa Alignment from Spaln_aa2Genome CATCTTCTCTTGACAGCCTGGAGGCGAACATAAAG aagtgccaaattaaagctcctgcactggttctatcttttttttttttaagCACCTTCACTTGATAGCCTTGAGGCAAACATAAAGgtaagaacccaagcacaacacttacctcatgacagctctaaacttatgaa Alignment from Spaln_nt2Genome CATCTTCTCTTGACAGCCTGGAGGCGAACATAAAG aagtgccaaattaaagctcctgcactggttctatcttttttttttttaagCACCTTCACTTGATAGCCTTGAGGCAAACATAAAGgtaagaacccaagcacaacacttacctcatgacagctctaaacttatgaa Alignment from Pairagon CATCTTCTCTTGACAGCCTGGAGGCGAACATAAAG aagtgccaaattaaagctcctgcactggttctatcttttttttttttaagCACCTTCACTTGATAGCCTTGAGGCAAACATAAAGgtaagaacccaagcacaacacttacctcatgacagctctaaacttatgaa Alignment from Exonerate_protein2genome CATCTTCTCTTGACAGCCTGGAGGCGAACATAAAG aagtgccaaattaaagctcctgcactggttctatcttttttttttttaagCACCTTCACTTGATAGCCTTGAGGCAAACATAAAGgtaagaacccaagcacaacacttacctcatgacagctctaaacttatgaa Alignment from Exonerate_coding2genome aagtgccaaattaaagctcctgcactggttctatcttttttttttttaagcaccttcacttgatagccttgaggcaaacataaaggtaagaacccaagcacaacacttacctcatgacagctctaaacttatgaa Alignment from GeneWise aagtgccaaattaaagctcctgcactggttctatcttttttttttttaagcaccttcacttgatagccttgaggcaaacataaaggtaagaacccaagcacaacacttacctcatgacagctctaaacttatgaa #### 4430402I18Rik_ID6185_5 --> 0 - 0 Original Alignment GGCATTGCTCCCAAAATAGAGTTTTCTACAAGGACAGCCATCCTAGAATGTGTGTTCCCGTGTAAAAACAGATTCATTTGT tccatctgaatgaggagtgtgaaggatcaaatgaccccgtccatccacagGGCATTGCTCCTAAAATAGAATTTTCTACTAGGACAGTCATCTTAGAATGTGTGTTCCCATGTAAAAATAGATTCATCTGCgtgagatagccaggaagttttagcaattgatttgacataaacctctgcac Alignment from CESAR GGCATTGCTCCCAAAATAGAGTTTTCTACAAGGACAGCCATCCTAGAATGTGTGTTCCCGTGTAAAAACAGATTCATTTGT tccatctgaatgaggagtgtgaaggatcaaatgaccccgtccatccacagGGCATTGCTCCTAAAATAGAATTTTCTACTAGGACAGTCATCTTAGAATGTGTGTTCCCATGTAAAAATAGATTCATCTGCgtgagatagccaggaagttttagcaattgatttgacataaacctctgcac Alignment from Spaln_aa2Genome GGCATTGCTCCCAAAATAGAGTTTTCTACAAGGACAGCCATCCTAGAATGTGTGTTCCCGTGTAAAAACAGATTCATTTGT tccatctgaatgaggagtgtgaaggatcaaatgaccccgtccatccacagGGCATTGCTCCTAAAATAGAATTTTCTACTAGGACAGTCATCTTAGAATGTGTGTTCCCATGTAAAAATAGATTCATCTGCgtgagatagccaggaagttttagcaattgatttgacataaacctctgcac Alignment from Spaln_nt2Genome GGCATTGCTCCCAAAATAGAGTTTTCTACAAGGACAGCCATCCTAGAATGTGTGTTCCCGTGTAAAAACAGATTCATTTGT tccatctgaatgaggagtgtgaaggatcaaatgaccccgtccatccacagGGCATTGCTCCTAAAATAGAATTTTCTACTAGGACAGTCATCTTAGAATGTGTGTTCCCATGTAAAAATAGATTCATCTGCgtgagatagccaggaagttttagcaattgatttgacataaacctctgcac Alignment from Pairagon GGCATTGCTCCCAAAATAGAGTTTTCTACAAGGACAGCCATCCTAGAATGTGTGTTCCCGTGTAAAAACAGATTCATTTGT tccatctgaatgaggagtgtgaaggatcaaatgaccccgtccatccacagGGCATTGCTCCTAAAATAGAATTTTCTACTAGGACAGTCATCTTAGAATGTGTGTTCCCATGTAAAAATAGATTCATCTGCgtgagatagccaggaagttttagcaattgatttgacataaacctctgcac Alignment from Exonerate_protein2genome GGCATTGCTCCCAAAATAGAGTTTTCTACAAGGACAGCCATCCTAGAATGTGTGTTCCCGTGTAAAAACAGATTCATTTGT tccatctgaatgaggagtgtgaaggatcaaatgaccccgtccatccacagGGCATTGCTCCTAAAATAGAATTTTCTACTAGGACAGTCATCTTAGAATGTGTGTTCCCATGTAAAAATAGATTCATCTGCgtgagatagccaggaagttttagcaattgatttgacataaacctctgcac Alignment from Exonerate_coding2genome GGCATTGCTCCCAAAATAGAGTTTTCTACAAGGACAGCCATCCTAGAATGTGTGTTCCCGTGTAAAAACAGATTCATTTGT tccatctgaatgaggagtgtgaaggatcaaatgaccccgtccatccacagGGCATTGCTCCTAAAATAGAATTTTCTACTAGGACAGTCATCTTAGAATGTGTGTTCCCATGTAAAAATAGATTCATCTGCgtgagatagccaggaagttttagcaattgatttgacataaacctctgcac Alignment from GeneWise GGCATTGCTCCCAAAATAGAGTTTTCTACAAGGACAGCCATCCTAGAATGTGTGTTCCCGTGTAAAAACAGATTCATTTGT tccatctgaatgaggagtgtgaaggatcaaatgaccccgtccatccacagGGCATTGCTCCTAAAATAGAATTTTCTACTAGGACAGTCATCTTAGAATGTGTGTTCCCATGTAAAAATAGATTCATCTGCgtgagatagccaggaagttttagcaattgatttgacataaacctctgcac #### 4430402I18Rik_ID6187_3 --> 2 - 1 Original Alignment gcTTCCTAACCAGGTTTGAATTAGTACAGCTAGTGTCTCCAg tgtcttggaaggaacattagacgtaagggatttttcctttcttttgccaggtTTCCTAACAAGCTTTGAATTAGTACAACTAGTGTCTCCAggtaccatgtgaaaatacacagttgtggataataggcaagcctctaaatgt Alignment from CESAR gcTTCCTAACCAGGTTTGAATTAGTACAGCTAGTGTCTCCAg tgtcttggaaggaacattagacgtaagggatttttcctttcttttgccaggtTTCCTAACAAGCTTTGAATTAGTACAACTAGTGTCTCCAggtaccatgtgaaaatacacagttgtggataataggcaagcctctaaatgt Alignment from Spaln_aa2Genome GCTTCCTAACCAGGTTTGAATTAGTACAGCTAGTGTCTCCAG tgtcttggaaggaacattagacgtaagggatttttcctttcttttgccagGTTTCCTAACAAGCTTTGAATTAGTACAACTAGTGTCTCCAGgtaccatgtgaaaatacacagttgtggataataggcaagcctctaaatgt Alignment from Spaln_nt2Genome GCTTCCTAACCAGGTTTGAATTAGTACAGCTAGTGTCTCCAG tgtcttggaaggaacattagacgtaagggatttttcctttcttttgccagGTTTCCTAACAAGCTTTGAATTAGTACAACTAGTGTCTCCAGgtaccatgtgaaaatacacagttgtggataataggcaagcctctaaatgt Alignment from Pairagon GCTTCCTAACCAGGTTTGAATTAGTACAGCTAGTGTCTCCAG tgtcttggaaggaacattagacgtaagggatttttcctttcttttgccagGTTTCCTAACAAGCTTTGAATTAGTACAACTAGTGTCTCCAGgtaccatgtgaaaatacacagttgtggataataggcaagcctctaaatgt Alignment from Exonerate_protein2genome GCTTCCTAACCAGGTTTGAATTAGTACAGCTAGTGTCTCCAG tgtcttggaaggaacattagacgtaagggatttttcctttcttttgccagGTTTCCTAACAAGCTTTGAATTAGTACAACTAGTGTCTCCAGgtaccatgtgaaaatacacagttgtggataataggcaagcctctaaatgt Alignment from Exonerate_coding2genome GCTTCCTAACCAGGTTTGAATTAGTACAGCTAGTGTCTCCAG tgtcttggaaggaacattagacgtaagggatttttcctttcttttgccagGTTTCCTAACAAGCTTTGAATTAGTACAACTAGTGTCTCCAGgtaccatgtgaaaatacacagttgtggataataggcaagcctctaaatgt Alignment from GeneWise GGTATTTGAAGAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTAGAAAGCTTCCTAACCAGGTTTGAATTAGTACAGCTAGTGTCTCCAG TGTCTTGGAAGGAACATTAGACGTAAGGGATTTTTCCTTTCTTTTGCCAGGTTTCCTAACAAGCTTTGAATTAGTACAACTAGTGTCTCCAGgtaccatgtgaaaatacacagttgtggataataggcaagcctctaaatgt #### 4930506M07Rik_ID12886_2 --> 2 - 0 Original Alignment ccATTGGCGAATATGAAGACCTTCGAGCAGAGAACCAGAAAACAAAGGAGAAG tgactggtcgactttcaggaacaatgaagtgtgcctttgtcctgctacagccATTGGAGAATATGAAGACCTCCGAGCAGAGAACCAAAAAACCAAGGAGAAAgtaagggtacatataaatcctgtctatcaaaagtatgcctctttggactg Alignment from CESAR ccATTGGCGAATATGAAGACCTTCGAGCAGAGAACCAGAAAACAAAGGAGAAG tgactggtcgactttcaggaacaatgaagtgtgcctttgtcctgctacagccATTGGAGAATATGAAGACCTCCGAGCAGAGAACCAAAAAACCAAGGAGAAAgtaagggtacatataaatcctgtctatcaaaagtatgcctctttggactg Alignment from Spaln_aa2Genome CCATTGGCGAATATGAAGACCTTCGAGCAGAGAACCAGAAAACAAAGGAGAAG tgactggtcgactttcaggaacaatgaagtgtgcctttgtcctgctacagCCATTGGAGAATATGAAGACCTCCGAGCAGAGAACCAAAAAACCAAGGAGAAAgtaagggtacatataaatcctgtctatcaaaagtatgcctctttggactg Alignment from Spaln_nt2Genome CCATTGGCGAATATGAAGACCTTCGAGCAGAGAACCAGAAAACAAAGGAGAAG tgactggtcgactttcaggaacaatgaagtgtgcctttgtcctgctacagCCATTGGAGAATATGAAGACCTCCGAGCAGAGAACCAAAAAACCAAGGAGAAAgtaagggtacatataaatcctgtctatcaaaagtatgcctctttggactg Alignment from Pairagon CCATTGGCGAATATGAAGACCTTCGAGCAGAGAACCAGAAAACAAAGGAGAAG tgactggtcgactttcaggaacaatgaagtgtgcctttgtcctgctacagCCATTGGAGAATATGAAGACCTCCGAGCAGAGAACCAAAAAACCAAGGAGAAAgtaagggtacatataaatcctgtctatcaaaagtatgcctctttggactg Alignment from Exonerate_protein2genome CCATTGGCGAATATGAAGACCTTCGAGCAGAGAACCAGAAAACAAAGGAGAAG tgactggtcgactttcaggaacaatgaagtgtgcctttgtcctgctacagCCATTGGAGAATATGAAGACCTCCGAGCAGAGAACCAAAAAACCAAGGAGAAAgtaagggtacatataaatcctgtctatcaaaagtatgcctctttggactg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCATTGGCGAATATGAAGACCTTCGAGCAGAGAACCAGAAAACAAAGGAGAAG tgactggtcgactttcaggaacaatgaagtgtgcctttgtcctgctacagCCATTGGAGAATATGAAGACCTCCGAGCAGAGAACCAAAAAACCAAGGAGAAAgtaagggtacatataaatcctgtctatcaaaagtatgcctctttggactg #### 9130011E15Rik_ID9640_21 --> 0 - 1 Original Alignment ATTGTGAACCTATTTAACATGTTTATCACATACGGTGACACATTCCTGCCAACCCCCAGCAGCTACGATGAGCTTTACTATGAAATTATCCGCATGCACCAGAGCTTTGACAACCTCTACTCCATGg aaactatggcctctcttgtagcccaagttgcccttcctcttgaacctcagATTGTGAACCTATTTAATATGTTCATCACATATGGTGACACGTTCCTGCCAACCCCCGGCAGCTATGATGAGCTTTATTATGAAATCATCTGCATGCACCAGAGCTTTGACAACCTCTACTCCATGggtaagtctgtctctctttattcttatgatagtggggtcccttaggtacag Alignment from CESAR ATTGTGAACCTATTTAACATGTTTATCACATACGGTGACACATTCCTGCCAACCCCCAGCAGCTACGATGAGCTTTACTATGAAATTATCCGCATGCACCAGAGCTTTGACAACCTCTACTCCATGg aaactatggcctctcttgtagcccaagttgcccttcctcttgaacctcagATTGTGAACCTATTTAATATGTTCATCACATATGGTGACACGTTCCTGCCAACCCCCGGCAGCTATGATGAGCTTTATTATGAAATCATCTGCATGCACCAGAGCTTTGACAACCTCTACTCCATGggtaagtctgtctctctttattcttatgatagtggggtcccttaggtacag Alignment from Spaln_aa2Genome ATTGTGAACCTATTTAACATGTTTATCACATACGGTGACACATTCCTGCCAACCCCCAGCAGCTACGATGAGCTTTACTATGAAATTATCCGCATGCACCAGAGCTTTGACAACCTCTACTCCATGG aaactatggcctctcttgtagcccaagttgcccttcctcttgaacctcagATTGTGAACCTATTTAATATGTTCATCACATATGGTGACACGTTCCTGCCAACCCCCGGCAGCTATGATGAGCTTTATTATGAAATCATCTGCATGCACCAGAGCTTTGACAACCTCTACTCCATGGgtaagtctgtctctctttattcttatgatagtggggtcccttaggtacag Alignment from Spaln_nt2Genome ATTGTGAACCTATTTAACATGTTTATCACATACGGTGACACATTCCTGCCAACCCCCAGCAGCTACGATGAGCTTTACTATGAAATTATCCGCATGCACCAGAGCTTTGACAACCTCTACTCCATGG aaactatggcctctcttgtagcccaagttgcccttcctcttgaacctcagATTGTGAACCTATTTAATATGTTCATCACATATGGTGACACGTTCCTGCCAACCCCCGGCAGCTATGATGAGCTTTATTATGAAATCATCTGCATGCACCAGAGCTTTGACAACCTCTACTCCATGGgtaagtctgtctctctttattcttatgatagtggggtcccttaggtacag Alignment from Pairagon ATTGTGAACCTATTTAACATGTTTATCACATACGGTGACACATTCCTGCCAACCCCCAGCAGCTACGATGAGCTTTACTATGAAATTATCCGCATGCACCAGAGCTTTGACAACCTCTACTCCATGG aaactatggcctctcttgtagcccaagttgcccttcctcttgaacctcagATTGTGAACCTATTTAATATGTTCATCACATATGGTGACACGTTCCTGCCAACCCCCGGCAGCTATGATGAGCTTTATTATGAAATCATCTGCATGCACCAGAGCTTTGACAACCTCTACTCCATGGgtaagtctgtctctctttattcttatgatagtggggtcccttaggtacag Alignment from Exonerate_protein2genome ATTGTGAACCTATTTAACATGTTTATCACATACGGTGACACATTCCTGCCAACCCCCAGCAGCTACGATGAGCTTTACTATGAAATTATCCGCATGCACCAGAGCTTTGACAACCTCTACTCCATGG aaactatggcctctcttgtagcccaagttgcccttcctcttgaacctcagATTGTGAACCTATTTAATATGTTCATCACATATGGTGACACGTTCCTGCCAACCCCCGGCAGCTATGATGAGCTTTATTATGAAATCATCTGCATGCACCAGAGCTTTGACAACCTCTACTCCATGGgtaagtctgtctctctttattcttatgatagtggggtcccttaggtacag Alignment from Exonerate_coding2genome ATTGTGAACCTATTTAACATGTTTATCACATACGGTGACACATTCCTGCCAACCCCCAGCAGCTACGATGAGCTTTACTATGAAATTATCCGCATGCACCAGAGCTTTGACAACCTCTACTCCATGG aaactatggcctctcttgtagcccaagttgcccttcctcttgaacctcagATTGTGAACCTATTTAATATGTTCATCACATATGGTGACACGTTCCTGCCAACCCCCGGCAGCTATGATGAGCTTTATTATGAAATCATCTGCATGCACCAGAGCTTTGACAACCTCTACTCCATGGgtaagtctgtctctctttattcttatgatagtggggtcccttaggtacag Alignment from GeneWise ATTGTGAACCTATTTAACATGTTTATCACATACGGTGACACATTCCTGCCAACCCCCAGCAGCTACGATGAGCTTTACTATGAAATTATCCGCATGCACCAGAGCTTTGACAACCTCTACTCCATGG aaactatggcctctcttgtagcccaagttgcccttcctcttgaacctcagATTGTGAACCTATTTAATATGTTCATCACATATGGTGACACGTTCCTGCCAACCCCCGGCAGCTATGATGAGCTTTATTATGAAATCATCTGCATGCACCAGAGCTTTGACAACCTCTACTCCATGGgtaagtctgtctctctttattcttatgatagtggggtcccttaggtacag #### 9130011E15Rik_ID9663_13 --> 0 - 1 Original Alignment AGCCATCCAGAAATGGGGTTGGTGACAGCCCCTGCCAGCCCTACTCCTACAACCCCAGCCACACCCCTTGGGACTACACCGCCCTCCTCTGACg agttgcttgtaagcagacctcatgatttatagtctgaacttttcttctagAGCCATCCTAAGATGGGCCTAGTGACAGCTTCTGCAAGTCCTACTCCTACAACTCCAGCTACCCCCCTTGGGACTACTCCCCCACCCTCTGATggtgagcattaaagaatgtctctgactatgaaaatgtatttgtcttatgag Alignment from CESAR AGCCATCCAGAAATGGGGTTGGTGACAGCCCCTGCCAGCCCTACTCCTACAACCCCAGCCACACCCCTTGGGACTACACCGCCCTCCTCTGACg agttgcttgtaagcagacctcatgatttatagtctgaacttttcttctagAGCCATCCTAAGATGGGCCTAGTGACAGCTTCTGCAAGTCCTACTCCTACAACTCCAGCTACCCCCCTTGGGACTACTCCCCCACCCTCTGATggtgagcattaaagaatgtctctgactatgaaaatgtatttgtcttatgag Alignment from Spaln_aa2Genome AGCCATCCAGAAATGGGGTTGGTGACAGCCCCTGCCAGCCCTACTCCTACAACCCCAGCCACACCCCTTGGGACTACACCGCCCTCCTCTGACG agttgcttgtaagcagacctcatgatttatagtctgaacttttcttctagAGCCATCCTAAGATGGGCCTAGTGACAGCTTCTGCAAGTCCTACTCCTACAACTCCAGCTACCCCCCTTGGGACTACTCCCCCACCCTCTGATGgtgagcattaaagaatgtctctgactatgaaaatgtatttgtcttatgag Alignment from Spaln_nt2Genome AGCCATCCAGAAATGGGGTTGGTGACAGCCCCTGCCAGCCCTACTCCTACAACCCCAGCCACACCCCTTGGGACTACACCGCCCTCCTCTGACG agttgcttgtaagcagacctcatgatttatagtctgaacttttcttctagAGCCATCCTAAGATGGGCCTAGTGACAGCTTCTGCAAGTCCTACTCCTACAACTCCAGCTACCCCCCTTGGGACTACTCCCCCACCCTCTGATGgtgagcattaaagaatgtctctgactatgaaaatgtatttgtcttatgag Alignment from Pairagon AGCCATCCAGAAATGGGGTTGGTGACAGCCCCTGCCAGCCCTACTCCTACAACCCCAGCCACACCCCTTGGGACTACACCGCCCTCCTCTGACG agttgcttgtaagcagacctcatgatttatagtctgaacttttcttctagAGCCATCCTAAGATGGGCCTAGTGACAGCTTCTGCAAGTCCTACTCCTACAACTCCAGCTACCCCCCTTGGGACTACTCCCCCACCCTCTGATGgtgagcattaaagaatgtctctgactatgaaaatgtatttgtcttatgag Alignment from Exonerate_protein2genome AGCCATCCAGAAATGGGGTTGGTGACAGCCCCTGCCAGCCCTACTCCTACAACCCCAGCCACACCCCTTGGGACTACACCGCCCTCCTCTGACG agttgcttgtaagcagacctcatgatttatagtctgaacttttcttctagAGCCATCCTAAGATGGGCCTAGTGACAGCTTCTGCAAGTCCTACTCCTACAACTCCAGCTACCCCCCTTGGGACTACTCCCCCACCCTCTGATGgtgagcattaaagaatgtctctgactatgaaaatgtatttgtcttatgag Alignment from Exonerate_coding2genome AGCCATCCAGAAATGGGGTTGGTGACAGCCCCTGCCAGCCCTACTCCTACAACCCCAGCCACACCCCTTGGGACTACACCGCCCTCCTCTGACG agttgcttgtaagcagacctcatgatttatagtctgaacttttcttctagAGCCATCCTAAGATGGGCCTAGTGACAGCTTCTGCAAGTCCTACTCCTACAACTCCAGCTACCCCCCTTGGGACTACTCCCCCACCCTCTGATGgtgagcattaaagaatgtctctgactatgaaaatgtatttgtcttatgag Alignment from GeneWise AGCCATCCAGAAATGGGGTTGGTGACAGCCCCTGCCAGCCCTACTCCTACAACCCCAGCCACACCCCTTGGGACTACACCGCCCTCCTCTGACG agttgcttgtaagcagacctcatgatttatagtctgaacttttcttctagAGCCATCCTAAGATGGGCCTAGTGACAGCTTCTGCAAGTCCTACTCCTACAACTCCAGCTACCCCCCTTGGGACTACTCCCCCACCCTCTGATGgtgagcattaaagaatgtctctgactatgaaaatgtatttgtcttatgag #### 9130011E15Rik_ID9665_12 --> 1 - 0 Original Alignment aACCAATGAAGCCATTCTTCTGGCACTCTATGAAGCTGTCCATTTAAATCGAAACTTCATCACAGTTTTAGCTCAG tgacataaagaggaagcatgtcacaacacagtctctttcactgcctacagaTCCAATGAGGCAACTCTTCTGGTGCTCTATGAAGCTATCCATTTAAATCGAAAGTTCATTACAGTTTCAGCTCATgtgagttatcacaatcttatttggggtgtagcccccccctttcatactca Alignment from CESAR aACCAATGAAGCCATTCTTCTGGCACTCTATGAAGCTGTCCATTTAAATCGAAACTTCATCACAGTTTTAGCTCAG tgacataaagaggaagcatgtcacaacacagtctctttcactgcctacagaTCCAATGAGGCAACTCTTCTGGTGCTCTATGAAGCTATCCATTTAAATCGAAAGTTCATTACAGTTTCAGCTCATgtgagttatcacaatcttatttggggtgtagcccccccctttcatactca Alignment from Spaln_aa2Genome AACCAATGAAGCCATTCTTCTGGCACTCTATGAAGCTGTCCATTTAAATCGAAACTTCATCACAGTTTTAGCTCAG tgacataaagaggaagcatgtcacaacacagtctctttcactgcctacagATCCAATGAGGCAACTCTTCTGGTGCTCTATGAAGCTATCCATTTAAATCGAAAGTTCATTACAGTTTCAGCTCATgtgagttatcacaatcttatttggggtgtagcccccccctttcatactca Alignment from Spaln_nt2Genome AACCAATGAAGCCATTCTTCTGGCACTCTATGAAGCTGTCCATTTAAATCGAAACTTCATCACAGTTTTAGCTCAG tgacataaagaggaagcatgtcacaacacagtctctttcactgcctacagATCCAATGAGGCAACTCTTCTGGTGCTCTATGAAGCTATCCATTTAAATCGAAAGTTCATTACAGTTTCAGCTCATgtgagttatcacaatcttatttggggtgtagcccccccctttcatactca Alignment from Pairagon AACCAATGAAGCCATTCTTCTGGCACTCTATGAAGCTGTCCATTTAAATCGAAACTTCATCACAGTTTTAGCTCAG tgacataaagaggaagcatgtcacaacacagtctctttcactgcctacagATCCAATGAGGCAACTCTTCTGGTGCTCTATGAAGCTATCCATTTAAATCGAAAGTTCATTACAGTTTCAGCTCATgtgagttatcacaatcttatttggggtgtagcccccccctttcatactca Alignment from Exonerate_protein2genome AACCAATGAAGCCATTCTTCTGGCACTCTATGAAGCTGTCCATTTAAATCGAAACTTCATCACAGTTTTAGCTCAG tgacataaagaggaagcatgtcacaacacagtctctttcactgcctacagATCCAATGAGGCAACTCTTCTGGTGCTCTATGAAGCTATCCATTTAAATCGAAAGTTCATTACAGTTTCAGCTCATgtgagttatcacaatcttatttggggtgtagcccccccctttcatactca Alignment from Exonerate_coding2genome AACCAATGAAGCCATTCTTCTGGCACTCTATGAAGCTGTCCATTTAAATCGAAACTTCATCACAGTTTTAGCTCAG tgacataaagaggaagcatgtcacaacacagtctctttcactgcctacagATCCAATGAGGCAACTCTTCTGGTGCTCTATGAAGCTATCCATTTAAATCGAAAGTTCATTACAGTTTCAGCTCATgtgagttatcacaatcttatttggggtgtagcccccccctttcatactca Alignment from GeneWise AACCAATGAAGCCATTCTTCTGGCACTCTATGAAGCTGTCCATTTAAATCGAAACTTCATCACAGTTTTAGCTCAG tgacataaagaggaagcatgtcacaacacagtctctttcactgcctacagATCCAATGAGGCAACTCTTCTGGTGCTCTATGAAGCTATCCATTTAAATCGAAAGTTCATTACAGTTTCAGCTCATgtgagttatcacaatcttatttggggtgtagcccccccctttcatactca #### 9130011E15Rik_ID9670_8 --> 0 - 0 Original Alignment TCTGTGAATCCTTACATTGTGAAGCTGTCTATTGTGGACGACGAGGCTACACTGAAT cgctttcttaacttgatagtagttacccgcatctctcttgacttctccagTCTGTAAATCCTTACATTGTGAAGCTGTCCGTTGTGGATGATGAGGCTACACTGAACgtgagcctggtgaaaacacccagttcctggttgcagtggagcaaatcgca Alignment from CESAR TCTGTGAATCCTTACATTGTGAAGCTGTCTATTGTGGACGACGAGGCTACACTGAAT cgctttcttaacttgatagtagttacccgcatctctcttgacttctccagTCTGTAAATCCTTACATTGTGAAGCTGTCCGTTGTGGATGATGAGGCTACACTGAACgtgagcctggtgaaaacacccagttcctggttgcagtggagcaaatcgca Alignment from Spaln_aa2Genome TCTGTGAATCCTTACATTGTGAAGCTGTCTATTGTGGACGACGAGGCTACACTGAAT cgctttcttaacttgatagtagttacccgcatctctcttgacttctccagTCTGTAAATCCTTACATTGTGAAGCTGTCCGTTGTGGATGATGAGGCTACACTGAACgtgagcctggtgaaaacacccagttcctggttgcagtggagcaaatcgca Alignment from Spaln_nt2Genome TCTGTGAATCCTTACATTGTGAAGCTGTCTATTGTGGACGACGAGGCTACACTGAAT cgctttcttaacttgatagtagttacccgcatctctcttgacttctccagTCTGTAAATCCTTACATTGTGAAGCTGTCCGTTGTGGATGATGAGGCTACACTGAACgtgagcctggtgaaaacacccagttcctggttgcagtggagcaaatcgca Alignment from Pairagon TCTGTGAATCCTTACATTGTGAAGCTGTCTATTGTGGACGACGAGGCTACACTGAAT cgctttcttaacttgatagtagttacccgcatctctcttgacttctccagTCTGTAAATCCTTACATTGTGAAGCTGTCCGTTGTGGATGATGAGGCTACACTGAACgtgagcctggtgaaaacacccagttcctggttgcagtggagcaaatcgca Alignment from Exonerate_protein2genome TCTGTGAATCCTTACATTGTGAAGCTGTCTATTGTGGACGACGAGGCTACACTGAAT cgctttcttaacttgatagtagttacccgcatctctcttgacttctccagTCTGTAAATCCTTACATTGTGAAGCTGTCCGTTGTGGATGATGAGGCTACACTGAACgtgagcctggtgaaaacacccagttcctggttgcagtggagcaaatcgca Alignment from Exonerate_coding2genome TCTGTGAATCCTTACATTGTGAAGCTGTCTATTGTGGACGACGAGGCTACACTGAAT cgctttcttaacttgatagtagttacccgcatctctcttgacttctccagTCTGTAAATCCTTACATTGTGAAGCTGTCCGTTGTGGATGATGAGGCTACACTGAACgtgagcctggtgaaaacacccagttcctggttgcagtggagcaaatcgca Alignment from GeneWise TCTGTGAATCCTTACATTGTGAAGCTGTCTATTGTGGACGACGAGGCTACACTGAAT cgctttcttaacttgatagtagttacccgcatctctcttgacttctccagTCTGTAAATCCTTACATTGTGAAGCTGTCCGTTGTGGATGATGAGGCTACACTGAACgtgagcctggtgaaaacacccagttcctggttgcagtggagcaaatcgca #### 9130011E15Rik_ID9677_4 --> 0 - 0 Original Alignment ACCTTGTGTGCACTTATTCGAGGAGTCCACCAGAAGAATAAATCTACGTCTGGATTTGACATCATTAATATGCTGATGGGCTTTGACAAGGCAGAGCTGTGCATGAAG agactcctaatccagaagcctcttgtattctccattgttctttcttacagACCTTATGTACACTAATCCAAGGGGTCCATCAAAAGAATAAATCTACATCTGGGCTTGACATCATTAATATGCTGATGGGCTTTGATAAGGCAGAACTATGCATGAGGgtgaggcgccagatctgggtactacaaacagctggtcctctattacataa Alignment from CESAR ACCTTGTGTGCACTTATTCGAGGAGTCCACCAGAAGAATAAATCTACGTCTGGATTTGACATCATTAATATGCTGATGGGCTTTGACAAGGCAGAGCTGTGCATGAAG agactcctaatccagaagcctcttgtattctccattgttctttcttacagACCTTATGTACACTAATCCAAGGGGTCCATCAAAAGAATAAATCTACATCTGGGCTTGACATCATTAATATGCTGATGGGCTTTGATAAGGCAGAACTATGCATGAGGgtgaggcgccagatctgggtactacaaacagctggtcctctattacataa Alignment from Spaln_aa2Genome ACCTTGTGTGCACTTATTCGAGGAGTCCACCAGAAGAATAAATCTACGTCTGGATTTGACATCATTAATATGCTGATGGGCTTTGACAAGGCAGAGCTGTGCATGAAG agactcctaatccagaagcctcttgtattctccattgttctttcttacagACCTTATGTACACTAATCCAAGGGGTCCATCAAAAGAATAAATCTACATCTGGGCTTGACATCATTAATATGCTGATGGGCTTTGATAAGGCAGAACTATGCATGAGGgtgaggcgccagatctgggtactacaaacagctggtcctctattacataa Alignment from Spaln_nt2Genome ACCTTGTGTGCACTTATTCGAGGAGTCCACCAGAAGAATAAATCTACGTCTGGATTTGACATCATTAATATGCTGATGGGCTTTGACAAGGCAGAGCTGTGCATGAAG agactcctaatccagaagcctcttgtattctccattgttctttcttacagACCTTATGTACACTAATCCAAGGGGTCCATCAAAAGAATAAATCTACATCTGGGCTTGACATCATTAATATGCTGATGGGCTTTGATAAGGCAGAACTATGCATGAGGgtgaggcgccagatctgggtactacaaacagctggtcctctattacataa Alignment from Pairagon ACCTTGTGTGCACTTATTCGAGGAGTCCACCAGAAGAATAAATCTACGTCTGGATTTGACATCATTAATATGCTGATGGGCTTTGACAAGGCAGAGCTGTGCATGAAG agactcctaatccagaagcctcttgtattctccattgttctttcttacagACCTTATGTACACTAATCCAAGGGGTCCATCAAAAGAATAAATCTACATCTGGGCTTGACATCATTAATATGCTGATGGGCTTTGATAAGGCAGAACTATGCATGAGGgtgaggcgccagatctgggtactacaaacagctggtcctctattacataa Alignment from Exonerate_protein2genome ACCTTGTGTGCACTTATTCGAGGAGTCCACCAGAAGAATAAATCTACGTCTGGATTTGACATCATTAATATGCTGATGGGCTTTGACAAGGCAGAGCTGTGCATGAAG agactcctaatccagaagcctcttgtattctccattgttctttcttacagACCTTATGTACACTAATCCAAGGGGTCCATCAAAAGAATAAATCTACATCTGGGCTTGACATCATTAATATGCTGATGGGCTTTGATAAGGCAGAACTATGCATGAGGgtgaggcgccagatctgggtactacaaacagctggtcctctattacataa Alignment from Exonerate_coding2genome ACCTTGTGTGCACTTATTCGAGGAGTCCACCAGAAGAATAAATCTACGTCTGGATTTGACATCATTAATATGCTGATGGGCTTTGACAAGGCAGAGCTGTGCATGAAG agactcctaatccagaagcctcttgtattctccattgttctttcttacagACCTTATGTACACTAATCCAAGGGGTCCATCAAAAGAATAAATCTACATCTGGGCTTGACATCATTAATATGCTGATGGGCTTTGATAAGGCAGAACTATGCATGAGGgtgaggcgccagatctgggtactacaaacagctggtcctctattacataa Alignment from GeneWise ACCTTGTGTGCACTTATTCGAGGAGTCCACCAGAAGAATAAATCTACGTCTGGATTTGACATCATTAATATGCTGATGGGCTTTGACAAGGCAGAGCTGTGCATGAAG agactcctaatccagaagcctcttgtattctccattgttctttcttacagACCTTATGTACACTAATCCAAGGGGTCCATCAAAAGAATAAATCTACATCTGGGCTTGACATCATTAATATGCTGATGGGCTTTGATAAGGCAGAACTATGCATGAGGgtgaggcgccagatctgggtactacaaacagctggtcctctattacataa #### A1cf_ID6640_2 --> 0 - 0 Original Alignment GAAAATGGACAAAGGAAGTATGGTGGCCCTCCACCAGGCTGGGATTCTACACCCCCAGAAAGGGGCTGCGAGATTTTCATTGGGAAACTTCCCCGGGACCTCTTTGAGGATGAACTCATACCATTGTGTGAAAAA tgtcaaggatatctgggttaaatacacgcaacatctcgttcttttcatagGAGAACGGACAAAGTAAGTATGGTGGACCTCCGCCAGGCTGGGATTCTATACCCCCAGTGAAGGGATGCAAAATTTTCATTGGTAAGCTTCCTCGGGACCTGTTTGAGGATGAACTTATTCCATTGTGTGAAAAAgtaaggccagaccagactcccattgtgcaccaaaactaccttccaactag Alignment from CESAR GAAAATGGACAAAGGAAGTATGGTGGCCCTCCACCAGGCTGGGATTCTACACCCCCAGAAAGGGGCTGCGAGATTTTCATTGGGAAACTTCCCCGGGACCTCTTTGAGGATGAACTCATACCATTGTGTGAAAAA tgtcaaggatatctgggttaaatacacgcaacatctcgttcttttcatagGAGAACGGACAAAGTAAGTATGGTGGACCTCCGCCAGGCTGGGATTCTATACCCCCAGTGAAGGGATGCAAAATTTTCATTGGTAAGCTTCCTCGGGACCTGTTTGAGGATGAACTTATTCCATTGTGTGAAAAAgtaaggccagaccagactcccattgtgcaccaaaactaccttccaactag Alignment from Spaln_aa2Genome GAAAATGGACAAAGGAAGTATGGTGGCCCTCCACCAGGCTGGGATTCTACACCCCCAGAAAGGGGCTGCGAGATTTTCATTGGGAAACTTCCCCGGGACCTCTTTGAGGATGAACTCATACCATTGTGTGAAAAA tgtcaaggatatctgggttaaatacacgcaacatctcgttcttttcatagGAGAACGGACAAAGTAAGTATGGTGGACCTCCGCCAGGCTGGGATTCTATACCCCCAGTGAAGGGATGCAAAATTTTCATTGGTAAGCTTCCTCGGGACCTGTTTGAGGATGAACTTATTCCATTGTGTGAAAAAgtaaggccagaccagactcccattgtgcaccaaaactaccttccaactag Alignment from Spaln_nt2Genome GAAAATGGACAAAGGAAGTATGGTGGCCCTCCACCAGGCTGGGATTCTACACCCCCAGAAAGGGGCTGCGAGATTTTCATTGGGAAACTTCCCCGGGACCTCTTTGAGGATGAACTCATACCATTGTGTGAAAAA tgtcaaggatatctgggttaaatacacgcaacatctcgttcttttcatagGAGAACGGACAAAGTAAGTATGGTGGACCTCCGCCAGGCTGGGATTCTATACCCCCAGTGAAGGGATGCAAAATTTTCATTGGTAAGCTTCCTCGGGACCTGTTTGAGGATGAACTTATTCCATTGTGTGAAAAAgtaaggccagaccagactcccattgtgcaccaaaactaccttccaactag Alignment from Pairagon GAAAATGGACAAAGGAAGTATGGTGGCCCTCCACCAGGCTGGGATTCTACACCCCCAGAAAGGGGCTGCGAGATTTTCATTGGGAAACTTCCCCGGGACCTCTTTGAGGATGAACTCATACCATTGTGTGAAAAA tgtcaaggatatctgggttaaatacacgcaacatctcgttcttttcatagGAGAACGGACAAAGTAAGTATGGTGGACCTCCGCCAGGCTGGGATTCTATACCCCCAGTGAAGGGATGCAAAATTTTCATTGGTAAGCTTCCTCGGGACCTGTTTGAGGATGAACTTATTCCATTGTGTGAAAAAgtaaggccagaccagactcccattgtgcaccaaaactaccttccaactag Alignment from Exonerate_protein2genome GAAAATGGACAAAGGAAGTATGGTGGCCCTCCACCAGGCTGGGATTCTACACCCCCAGAAAGGGGCTGCGAGATTTTCATTGGGAAACTTCCCCGGGACCTCTTTGAGGATGAACTCATACCATTGTGTGAAAAA tgtcaaggatatctgggttaaatacacgcaacatctcgttcttttcatagGAGAACGGACAAAGTAAGTATGGTGGACCTCCGCCAGGCTGGGATTCTATACCCCCAGTGAAGGGATGCAAAATTTTCATTGGTAAGCTTCCTCGGGACCTGTTTGAGGATGAACTTATTCCATTGTGTGAAAAAgtaaggccagaccagactcccattgtgcaccaaaactaccttccaactag Alignment from Exonerate_coding2genome GAAAATGGACAAAGGAAGTATGGTGGCCCTCCACCAGGCTGGGATTCTACACCCCCAGAAAGGGGCTGCGAGATTTTCATTGGGAAACTTCCCCGGGACCTCTTTGAGGATGAACTCATACCATTGTGTGAAAAA tgtcaaggatatctgggttaaatacacgcaacatctcgttcttttcatagGAGAACGGACAAAGTAAGTATGGTGGACCTCCGCCAGGCTGGGATTCTATACCCCCAGTGAAGGGATGCAAAATTTTCATTGGTAAGCTTCCTCGGGACCTGTTTGAGGATGAACTTATTCCATTGTGTGAAAAAgtaaggccagaccagactcccattgtgcaccaaaactaccttccaactag Alignment from GeneWise GAAAATGGACAAAGGAAGTATGGTGGCCCTCCACCAGGCTGGGATTCTACACCCCCAGAAAGGGGCTGCGAGATTTTCATTGGGAAACTTCCCCGGGACCTCTTTGAGGATGAACTCATACCATTGTGTGAAAAA tgtcaaggatatctgggttaaatacacgcaacatctcgttcttttcatagGAGAACGGACAAAGTAAGTATGGTGGACCTCCGCCAGGCTGGGATTCTATACCCCCAGTGAAGGGATGCAAAATTTTCATTGGTAAGCTTCCTCGGGACCTGTTTGAGGATGAACTTATTCCATTGTGTGAAAAAgtaaggccagaccagactcccattgtgcaccaaaactaccttccaactag #### A1cf_ID6643_5 --> 2 - 1 Original Alignment gaAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAACCAGAAGTTGAAGTTGATGAGGACACAATGTCTTCCGTGAAAATCCTGTACGTAAGGAACCTTATGCTGTCTACCTCGGAAGAAATGATTGAAAAGGAATTCAACAGTATTAAACCAg aaagccacaaaagtcagcttatctacagtctccttcttctttttttgtaggcAGAATTCAGTTATGGGGACATCCTATTGCAGTGGATTGGGCAGAGCCAGAGGTGAAGGTTGATGAGGACTCAATGTCATCTGTGAAGATCCTGTACATAAGGAATCTCATGCTGTCTACATCAGAAGAAATGATTGAAAAGGAATTCAACAGTATCAACCCAggtaagaccagagcaacacaacatcaaatatcttaacagtggatgggctct Alignment from CESAR gaAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAACCAGAAGTTGAAGTTGATGAGGACACAATGTCTTCCGTGAAAATCCTGTACGTAAGGAACCTTATGCTGTCTACCTCGGAAGAAATGATTGAAAAGGAATTCAACAGTATTAAACCAg aaagccacaaaagtcagcttatctacagtctccttcttctttttttgtaggcAGAATTCAGTTATGGGGACATCCTATTGCAGTGGATTGGGCAGAGCCAGAGGTGAAGGTTGATGAGGACTCAATGTCATCTGTGAAGATCCTGTACATAAGGAATCTCATGCTGTCTACATCAGAAGAAATGATTGAAAAGGAATTCAACAGTATCAACCCAggtaagaccagagcaacacaacatcaaatatcttaacagtggatgggctct Alignment from Spaln_aa2Genome GAAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAACCAGAAGTTGAAGTTGATGAGGACACAATGTCTTCCGTGAAAATCCTGTACGTAAGGAACCTTATGCTGTCTACCTCGGAAGAAATGATTGAAAAGGAATTCAACAGTATTAAACCAG aaagccacaaaagtcagcttatctacagtctccttcttctttttttgtagGCAGAATTCAGTTATGGGGACATCCTATTGCAGTGGATTGGGCAGAGCCAGAGGTGAAGGTTGATGAGGACTCAATGTCATCTGTGAAGATCCTGTACATAAGGAATCTCATGCTGTCTACATCAGAAGAAATGATTGAAAAGGAATTCAACAGTATCAACCCAGgtaagaccagagcaacacaacatcaaatatcttaacagtggatgggctct Alignment from Spaln_nt2Genome GAAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAACCAGAAGTTGAAGTTGATGAGGACACAATGTCTTCCGTGAAAATCCTGTACGTAAGGAACCTTATGCTGTCTACCTCGGAAGAAATGATTGAAAAGGAATTCAACAGTATTAAACCAG aaagccacaaaagtcagcttatctacagtctccttcttctttttttgtagGCAGAATTCAGTTATGGGGACATCCTATTGCAGTGGATTGGGCAGAGCCAGAGGTGAAGGTTGATGAGGACTCAATGTCATCTGTGAAGATCCTGTACATAAGGAATCTCATGCTGTCTACATCAGAAGAAATGATTGAAAAGGAATTCAACAGTATCAACCCAGgtaagaccagagcaacacaacatcaaatatcttaacagtggatgggctct Alignment from Pairagon GAAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAACCAGAAGTTGAAGTTGATGAGGACACAATGTCTTCCGTGAAAATCCTGTACGTAAGGAACCTTATGCTGTCTACCTCGGAAGAAATGATTGAAAAGGAATTCAACAGTATTAAACCAG aaagccacaaaagtcagcttatctacagtctccttcttctttttttgtagGCAGAATTCAGTTATGGGGACATCCTATTGCAGTGGATTGGGCAGAGCCAGAGGTGAAGGTTGATGAGGACTCAATGTCATCTGTGAAGATCCTGTACATAAGGAATCTCATGCTGTCTACATCAGAAGAAATGATTGAAAAGGAATTCAACAGTATCAACCCAGgtaagaccagagcaacacaacatcaaatatcttaacagtggatgggctct Alignment from Exonerate_protein2genome GAAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAACCAGAAGTTGAAGTTGATGAGGACACAATGTCTTCCGTGAAAATCCTGTACGTAAGGAACCTTATGCTGTCTACCTCGGAAGAAATGATTGAAAAGGAATTCAACAGTATTAAACCAG aaagccacaaaagtcagcttatctacagtctccttcttctttttttgtagGCAGAATTCAGTTATGGGGACATCCTATTGCAGTGGATTGGGCAGAGCCAGAGGTGAAGGTTGATGAGGACTCAATGTCATCTGTGAAGATCCTGTACATAAGGAATCTCATGCTGTCTACATCAGAAGAAATGATTGAAAAGGAATTCAACAGTATCAACCCAGgtaagaccagagcaacacaacatcaaatatcttaacagtggatgggctct Alignment from Exonerate_coding2genome GAAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAACCAGAAGTTGAAGTTGATGAGGACACAATGTCTTCCGTGAAAATCCTGTACGTAAGGAACCTTATGCTGTCTACCTCGGAAGAAATGATTGAAAAGGAATTCAACAGTATTAAACCAG aaagccacaaaagtcagcttatctacagtctccttcttctttttttgtagGCAGAATTCAGTTATGGGGACATCCTATTGCAGTGGATTGGGCAGAGCCAGAGGTGAAGGTTGATGAGGACTCAATGTCATCTGTGAAGATCCTGTACATAAGGAATCTCATGCTGTCTACATCAGAAGAAATGATTGAAAAGGAATTCAACAGTATCAACCCAGgtaagaccagagcaacacaacatcaaatatcttaacagtggatgggctct Alignment from GeneWise AATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAACCAGAAGTTGAAGTTGATGAGGACACAATGTCTTCCGTGAAAATCCTGTACGTAAGGAACCTTATGCTGTCTACCTCGGAAGAAATGATTGAAAAGGAATTCAACAGTATTAAACCAG aaagccacaaaagtcagcttatctacagtctccttcttctttttttgtaggcagAATTCAGTTATGGGGACATCCTATTGCAGTGGATTGGGCAGAGCCAGAGGTGAAGGTTGATGAGGACTCAATGTCATCTGTGAAGATCCTGTACATAAGGAATCTCATGCTGTCTACATCAGAAGAAATGATTGAAAAGGAATTCAACAGTATCAACCCAGgtaagaccagagcaacacaacatcaaatatcttaacagtggatgggctct #### A430093F15Rik_ID3006_2 --> 0 - 2 Original Alignment GGAAATATGGCCCGAGGCAGATGGCGAGAAAGCTGCGCTGGCGGCCAGAAGGGATCGGAGCCAGCTGGAGCCACGAGTCAGGGCAGACTCTCAAAGCTCAGTTTCCTTGGAtg tgggatgcaaaaaaaactaggaaataaggctgtttccatcttgtctccagGGCAATATGACTCGGGGTAGATGGCATGAAAGCTGTGCTGGTGGCCAAAAGGGGTCAGAGCCAGCCGGAGCAACAAGCCCA---AGGCTCTCA---CTAAGTTTCCTTGGAtggtggaggagcacaaaaaggaaatttggagctttgccatgaccttcagact Alignment from CESAR GGAAATATGGCCCGAGGCAGATGGCGAGAAAGCTGCGCTGGCGGCCAGAAGGGATCGGAGCCAGCTGGAGCCACGAGTCAGGGCAGACTCTCAAAGCTCAGTTTCCTTGGAtg tgggatgcaaaaaaaactaggaaataaggctgtttccatcttgtctccagGGCAATATGACTCGGGGTAGATGGCATGAAAGCTGTGCTGGTGGCCAAAAGGGGTCAGAGCCAGCCGGAGCAACAAGCCCA---AGGCTCTCA---CTAAGTTTCCTTGGAtggtggaggagcacaaaaaggaaatttggagctttgccatgaccttcagact Alignment from Spaln_aa2Genome GGAAATATGGCCCGAGGCAGATGGCGAGAAAGCTGCGCTGGCGGCCAGAAGGGATCGGAGCCAGCTGGAGCCACGAGTCAGGGCAGACTCTCAAAGCTCAGTTTCCTTGGATG tgggatgcaaaaaaaactaggaaataaggctgtttccatcttgtctccagGGCAATATGACTCGGGGTAGATGGCATGAAAGCTGTGCTGGTGGCCAAAAGGGGTCAGAGCCAGCCGGAGCAACAAGCCCA---AGGCTCTCA---CTAAGTTTCCTTGGATGgtggaggagcacaaaaaggaaatttggagctttgccatgaccttcagact Alignment from Spaln_nt2Genome GGAAATATGGCCCGAGGCAGATGGCGAGAAAGCTGCGCTGGCGGCCAGAAGGGATCGGAGCCAGCTGGAGCCACGAGTCAGGGCAGACTCTCAAAGCTCAGTTTCCTTGGATG tgggatgcaaaaaaaactaggaaataaggctgtttccatcttgtctccagGGCAATATGACTCGGGGTAGATGGCATGAAAGCTGTGCTGGTGGCCAAAAGGGGTCAGAGCCAGCCGGAGCAACAAGCC---CAAGGCTCTCA---CTAAGTTTCCTTGGATGgtggaggagcacaaaaaggaaatttggagctttgccatgaccttcagact Alignment from Pairagon GGAAATATGGCCCGAGGCAGATGGCGAGAAAGCTGCGCTGGCGGCCAGAAGGGATCGGAGCCAGCTGGAGCCACGAGTCAGGGCAGACTCTCAAAGCTC------AGTTTCCTTGGATG tgggatgcaaaaaaaactaggaaataaggctgtttccatcttgtctccagGGCAATATGACTCGGGGTAGATGGCATGAAAGCTGTGCTGGTGGCCAAAAGGGGTCAGAGCCAGCCGGAGCAACAAG------------CCCAAGGCTCTCACTAAGTTTCCTTGGATGgtggaggagcacaaaaaggaaatttggagctttgccatgaccttcagact Alignment from Exonerate_protein2genome GGAAATATGGCCCGAGGCAGATGGCGAGAAAGCTGCGCTGGCGGCCAGAAGGGATCGGAGCCAGCTGGAGCCACGAGTCAGGGCAGACTCTCAAAGCTCAGTTTCCTTGGATG tgggatgcaaaaaaaactaggaaataaggctgtttccatcttgtctccagGGCAATATGACTCGGGGTAGATGGCATGAAAGCTGTGCTGGTGGCCAAAAGGGGTCAGAGCCAGCCGGAGCAACAAGCCCA---AGGCTCTCA---CTAAGTTTCCTTGGATGgtggaggagcacaaaaaggaaatttggagctttgccatgaccttcagact Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGAAATATGGCCCGAGGCAGATGGCGAGAAAGCTGCGCTGGCGGCCAGAAGGGATCGGAGCCAGCTGGAGCCACGAGTCAGGGCAGACTCTCAAAGCTCAGTTTCCTTGGATG tgggatgcaaaaaaaactaggaaataaggctgtttccatcttgtctccagGGCAATATGACTCGGGGTAGATGGCATGAAAGCTGTGCTGGTGGCCAAAAGGGGTCAGAGCCAGCCGGAGCAACAAGCCCA---AGGCTCTCA---CTAAGTTTCCTTGGATGgtggaggagcacaaaaaggaaatttggagctttgccatgaccttcagact #### A630007B06Rik_ID12183_14 --> 1 - 0 Original Alignment aATAATTCAGAGTTACGTTTTACGAGAAGAATCAGGCACACTTTCCTCAGAAGCATCTGATTTTAACAAAGTGCATTTGAGTAGACGCGGTGGCATCATGGCGTCCTTGTACACATCCCATCCCGCTGACAGCGGGCTAACACTGGAGCTCTCTTTGGAAATCAACCGAAAATTACAGGCTGTTTTGGAAGATACATTGCTAAAAAATATTACTTTGAAG ataatgtgtcatatgttagcagcagcaggttttgtgtcctctgcttgcaggATAATACATAGTTACATTCTCTGGGAGGAATCAGGTACACTATCGTCAGAGGCATCAGACTATAACAAA---CATTTGAGCAGACATGGTGGCATCATGGCTTCATTGTACACATCCCATCCTGCTGACAGTGGAATAACATTGGAGCTCTCATTGGAGATCAAT---CAATTACAAGCTGTGTTAGAAGCCACATTGCTGAAGAATATTACTTTGAAGgtgagtaaccccatgtagcgatttatatacattttgtgaatttccttctt Alignment from CESAR aATAATTCAGAGTTACGTTTTACGAGAAGAATCAGGCACACTTTCCTCAGAAGCATCTGATTTTAACAAAGTGCATTTGAGTAGACGCGGTGGCATCATGGCGTCCTTGTACACATCCCATCCCGCTGACAGCGGGCTAACACTGGAGCTCTCTTTGGAAATCAACCGAAAATTACAGGCTGTTTTGGAAGATACATTGCTAAAAAATATTACTTTGAAG ataatgtgtcatatgttagcagcagcaggttttgtgtcctctgcttgcaggATAATACATAGTTACATTCTCTGGGAGGAATCAGGTACACTATCGTCAGAGGCATCAGACTATAACAAA---CATTTGAGCAGACATGGTGGCATCATGGCTTCATTGTACACATCCCATCCTGCTGACAGTGGAATAACATTGGAGCTCTCATTGGAGATCAATCAA---TTACAAGCTGTGTTAGAAGCCACATTGCTGAAGAATATTACTTTGAAGgtgagtaaccccatgtagcgatttatatacattttgtgaatttccttctt Alignment from Spaln_aa2Genome AATAATTCAGAGTTACGTTTTACGAGAAGAATCAGGCACACTTTCCTCAGAAGCATCTGATTTTAACAAAGTGCATTTGAGTAGACGCGGTGGCATCATGGCGTCCTTGTACACATCCCATCCCGCTGACAGCGGGCTAACACTGGAGCTCTCTTTGGAAATCAACCGAAAATTACAGGCTGTTTTGGAAGATACATTGCTAAAAAATATTACTTTGAAG ataatgtgtcatatgttagcagcagcaggttttgtgtcctctgcttgcagGATAATACATAGTTACATTCTCTGGGAGGAATCAGGTACACTATCGTCAGAGGCATCAGACTATAACAAA---CATTTGAGCAGACATGGTGGCATCATGGCTTCATTGTACACATCCCATCCTGCTGACAGTGGAATAACATTGGAGCTCTCATTGGAGATCAAT---CAATTACAAGCTGTGTTAGAAGCCACATTGCTGAAGAATATTACTTTGAAGgtgagtaaccccatgtagcgatttatatacattttgtgaatttccttctt Alignment from Spaln_nt2Genome AATAATTCAGAGTTACGTTTTACGAGAAGAATCAGGCACACTTTCCTCAGAAGCATCTGATTTTAACAAAGTGCATTTGAGTAGACGCGGTGGCATCATGGCGTCCTTGTACACATCCCATCCCGCTGACAGCGGGCTAACACTGGAGCTCTCTTTGGAAATCAACCGAAAATTACAGGCTGTTTTGGAAGATACATTGCTAAAAAATATTACTTTGAAG ataatgtgtcatatgttagcagcagcaggttttgtgtcctctgcttgcagGATAATACATAGTTACATTCTCTGGGAGGAATCAGGTACACTATCGTCAGAGGCATCAGACTATAACAAA---CATTTGAGCAGACATGGTGGCATCATGGCTTCATTGTACACATCCCATCCTGCTGACAGTGGAATAACATTGGAGCTCTCATTGGAGATCAATC---AATTACAAGCTGTGTTAGAAGCCACATTGCTGAAGAATATTACTTTGAAGgtgagtaaccccatgtagcgatttatatacattttgtgaatttccttctt Alignment from Pairagon AATAATTCAGAGTTACGTTTTACGAGAAGAATCAGGCACACTTTCCTCAGAAGCATCTGATTTTAACAAAGTGCATTTGAGTAGACGCGGTGGCATCATGGCGTCCTTGTACACATCCCATCCCGCTGACAGCGGGCTAACACTGGAGCTCTCTTTGGAAATCAACCGAAAATTACAGGCTGTTTTGGAAGATACATTGCTAAAAAATATTACTTTGAAG ataatgtgtcatatgttagcagcagcaggttttgtgtcctctgcttgcagGATAATACATAGTTACATTCTCTGGGAGGAATCAGGTACACTATCGTCAGAGGCATCAGACTATAACAAA---CATTTGAGCAGACATGGTGGCATCATGGCTTCATTGTACACATCCCATCCTGCTGACAGTGGAATAACATTGGAGCTCTCATTGGAGATCAATC---AATTACAAGCTGTGTTAGAAGCCACATTGCTGAAGAATATTACTTTGAAGgtgagtaaccccatgtagcgatttatatacattttgtgaatttccttctt Alignment from Exonerate_protein2genome AATAATTCAGAGTTACGTTTTACGAGAAGAATCAGGCACACTTTCCTCAGAAGCATCTGATTTTAACAAAGTGCATTTGAGTAGACGCGGTGGCATCATGGCGTCCTTGTACACATCCCATCCCGCTGACAGCGGGCTAACACTGGAGCTCTCTTTGGAAATCAACCGAAAATTACAGGCTGTTTTGGAAGATACATTGCTAAAAAATATTACTTTGAAG ataatgtgtcatatgttagcagcagcaggttttgtgtcctctgcttgcagGATAATACATAGTTACATTCTCTGGGAGGAATCAGGTACACTATCGTCAGAGGCATCAGACTATAACAAA---CATTTGAGCAGACATGGTGGCATCATGGCTTCATTGTACACATCCCATCCTGCTGACAGTGGAATAACATTGGAGCTCTCATTGGAGATCAAT---CAATTACAAGCTGTGTTAGAAGCCACATTGCTGAAGAATATTACTTTGAAGgtgagtaaccccatgtagcgatttatatacattttgtgaatttccttctt Alignment from Exonerate_coding2genome AATAATTCAGAGTTACGTTTTACGAGAAGAATCAGGCACACTTTCCTCAGAAGCATCTGATTTTAACAAAGTGCATTTGAGTAGACGCGGTGGCATCATGGCGTCCTTGTACACATCCCATCCCGCTGACAGCGGGCTAACACTGGAGCTCTCTTTGGAAATCAACCGAAAATTACAGGCTGTTTTGGAAGATACATTGCTAAAAAATATTACTTTGAAG ataatgtgtcatatgttagcagcagcaggttttgtgtcctctgcttgcagGATAATACATAGTTACATTCTCTGGGAGGAATCAGGTACACTATCGTCAGAGGCATCAGACTATAACAAA---CATTTGAGCAGACATGGTGGCATCATGGCTTCATTGTACACATCCCATCCTGCTGACAGTGGAATAACATTGGAGCTCTCATTGGAGATCAAT---CAATTACAAGCTGTGTTAGAAGCCACATTGCTGAAGAATATTACTTTGAAGgtgagtaaccccatgtagcgatttatatacattttgtgaatttccttctt Alignment from GeneWise AATAATTCAGAGTTACGTTTTACGAGAAGAATCAGGCACACTTTCCTCAGAAGCATCTGATTTTAACAAAGTGCATTTGAGTAGACGCGGTGGCATCATGGCGTCCTTGTACACATCCCATCCCGCTGACAGCGGGCTAACACTGGAGCTCTCTTTGGAAATCAACCGAAAATTACAGGCTGTTTTGGAAGATACATTGCTAAAAAATATTACTTTGAAG ataatgtgtcatatgttagcagcagcaggttttgtgtcctctgcttgcagGATAATACATAGTTACATTCTCTGGGAGGAATCAGGTACACTATCGTCAGAGGCATCAGACTATAACAAA---CATTTGAGCAGACATGGTGGCATCATGGCTTCATTGTACACATCCCATCCTGCTGACAGTGGAATAACATTGGAGCTCTCATTGGAGATCAATCAA---TTACAAGCTGTGTTAGAAGCCACATTGCTGAAGAATATTACTTTGAAGgtgagtaaccccatgtagcgatttatatacattttgtgaatttccttctt #### A630007B06Rik_ID12188_9 --> 0 - 2 Original Alignment GCGAAATGTCTAGAAGATGAACGCTTAAGAACGGAAGATGAGTTATCAAAGTACAGGGAAATTATCAATCGACAGAAATCTGAAATTCAGAATTTACTGGACAAGGTGAAAATCACAGATCAGTTACATGAGCAGCTTCAAag agcaagcacagttaagtgactgcctaaccctgactctgccttctctgcagGCAAAATGTCTGGAAGACGAACGATTAAGGACAGAAGATGAGTTATCAAAATACCGGGAAATTATCAATCGACAGAGATCCGAAATACAGAATTTACTAGACAAGGTGAAAATCACTGATCAGTTACATGAGCAGCTTCAAaggtgagtagtaagtctccatactatgtcatattgtattgcacagccagtcc Alignment from CESAR GCGAAATGTCTAGAAGATGAACGCTTAAGAACGGAAGATGAGTTATCAAAGTACAGGGAAATTATCAATCGACAGAAATCTGAAATTCAGAATTTACTGGACAAGGTGAAAATCACAGATCAGTTACATGAGCAGCTTCAAag agcaagcacagttaagtgactgcctaaccctgactctgccttctctgcagGCAAAATGTCTGGAAGACGAACGATTAAGGACAGAAGATGAGTTATCAAAATACCGGGAAATTATCAATCGACAGAGATCCGAAATACAGAATTTACTAGACAAGGTGAAAATCACTGATCAGTTACATGAGCAGCTTCAAaggtgagtagtaagtctccatactatgtcatattgtattgcacagccagtcc Alignment from Spaln_aa2Genome GCGAAATGTCTAGAAGATGAACGCTTAAGAACGGAAGATGAGTTATCAAAGTACAGGGAAATTATCAATCGACAGAAATCTGAAATTCAGAATTTACTGGACAAGGTGAAAATCACAGATCAGTTACATGAGCAGCTTCAAAG agcaagcacagttaagtgactgcctaaccctgactctgccttctctgcagGCAAAATGTCTGGAAGACGAACGATTAAGGACAGAAGATGAGTTATCAAAATACCGGGAAATTATCAATCGACAGAGATCCGAAATACAGAATTTACTAGACAAGGTGAAAATCACTGATCAGTTACATGAGCAGCTTCAAAGgtgagtagtaagtctccatactatgtcatattgtattgcacagccagtcc Alignment from Spaln_nt2Genome GCGAAATGTCTAGAAGATGAACGCTTAAGAACGGAAGATGAGTTATCAAAGTACAGGGAAATTATCAATCGACAGAAATCTGAAATTCAGAATTTACTGGACAAGGTGAAAATCACAGATCAGTTACATGAGCAGCTTCAAAG agcaagcacagttaagtgactgcctaaccctgactctgccttctctgcagGCAAAATGTCTGGAAGACGAACGATTAAGGACAGAAGATGAGTTATCAAAATACCGGGAAATTATCAATCGACAGAGATCCGAAATACAGAATTTACTAGACAAGGTGAAAATCACTGATCAGTTACATGAGCAGCTTCAAAGgtgagtagtaagtctccatactatgtcatattgtattgcacagccagtcc Alignment from Pairagon GCGAAATGTCTAGAAGATGAACGCTTAAGAACGGAAGATGAGTTATCAAAGTACAGGGAAATTATCAATCGACAGAAATCTGAAATTCAGAATTTACTGGACAAGGTGAAAATCACAGATCAGTTACATGAGCAGCTTCAAAG agcaagcacagttaagtgactgcctaaccctgactctgccttctctgcagGCAAAATGTCTGGAAGACGAACGATTAAGGACAGAAGATGAGTTATCAAAATACCGGGAAATTATCAATCGACAGAGATCCGAAATACAGAATTTACTAGACAAGGTGAAAATCACTGATCAGTTACATGAGCAGCTTCAAAGgtgagtagtaagtctccatactatgtcatattgtattgcacagccagtcc Alignment from Exonerate_protein2genome GCGAAATGTCTAGAAGATGAACGCTTAAGAACGGAAGATGAGTTATCAAAGTACAGGGAAATTATCAATCGACAGAAATCTGAAATTCAGAATTTACTGGACAAGGTGAAAATCACAGATCAGTTACATGAGCAGCTTCAAAG agcaagcacagttaagtgactgcctaaccctgactctgccttctctgcagGCAAAATGTCTGGAAGACGAACGATTAAGGACAGAAGATGAGTTATCAAAATACCGGGAAATTATCAATCGACAGAGATCCGAAATACAGAATTTACTAGACAAGGTGAAAATCACTGATCAGTTACATGAGCAGCTTCAAAGgtgagtagtaagtctccatactatgtcatattgtattgcacagccagtcc Alignment from Exonerate_coding2genome GCGAAATGTCTAGAAGATGAACGCTTAAGAACGGAAGATGAGTTATCAAAGTACAGGGAAATTATCAATCGACAGAAATCTGAAATTCAGAATTTACTGGACAAGGTGAAAATCACAGATCAGTTACATGAGCAGCTTCAAAG agcaagcacagttaagtgactgcctaaccctgactctgccttctctgcagGCAAAATGTCTGGAAGACGAACGATTAAGGACAGAAGATGAGTTATCAAAATACCGGGAAATTATCAATCGACAGAGATCCGAAATACAGAATTTACTAGACAAGGTGAAAATCACTGATCAGTTACATGAGCAGCTTCAAAGgtgagtagtaagtctccatactatgtcatattgtattgcacagccagtcc Alignment from GeneWise GCGAAATGTCTAGAAGATGAACGCTTAAGAACGGAAGATGAGTTATCAAAGTACAGGGAAATTATCAATCGACAGAAATCTGAAATTCAGAATTTACTGGACAAGGTGAAAATCACAGATCAGTTACATGAGCAGCTTCAAAG agcaagcacagttaagtgactgcctaaccctgactctgccttctctgcagGCAAAATGTCTGGAAGACGAACGATTAAGGACAGAAGATGAGTTATCAAAATACCGGGAAATTATCAATCGACAGAGATCCGAAATACAGAATTTACTAGACAAGGTGAAAATCACTGATCAGTTACATGAGCAGCTTCAAAGgtgagtagtaagtctccatactatgtcatattgtattgcacagccagtcc #### A630007B06Rik_ID12193_4 --> 0 - 0 Original Alignment GCCAATAAGAAATGTGAAGAGGCCCGTCAGGAAAAGGAGGCAATGGTAATGAAGTATGTGAGAGGCGAGAAGGAGGCTCTAGACCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGATGCAAGTAAGGAATTGGAGAAAAACACTAACAAAATTAAGCAGCTGTCTCAGGAGAAAGGGCGGCTGCAGCAACTCTATGAATCGAAG cagttgtcgaaagtgcagtgaacattggtgccatttttgtcttcctttagGCAAATAAAAAATGCGAAGAGGCCCGTCAGGAGAAGGAGGCAATGGTAATGAAGTATGTAAGAGGGGAGAAGGAGGCACTTGATCTGCGAAAGGAAAAAGAAACTCTTGAGAGGACACTCAGAGGGGCAAGTAAAGAGCTAGAGAAAAATGCTAACAAGATTAAGCAGCTGTCTCAGGATAAAGGGCGACTACAGCAACTTTATGAATCCCAAgtaagtagtatatccagtgtctgtttgtatcacttagttccacagtttta Alignment from CESAR GCCAATAAGAAATGTGAAGAGGCCCGTCAGGAAAAGGAGGCAATGGTAATGAAGTATGTGAGAGGCGAGAAGGAGGCTCTAGACCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGATGCAAGTAAGGAATTGGAGAAAAACACTAACAAAATTAAGCAGCTGTCTCAGGAGAAAGGGCGGCTGCAGCAACTCTATGAATCGAAG cagttgtcgaaagtgcagtgaacattggtgccatttttgtcttcctttagGCAAATAAAAAATGCGAAGAGGCCCGTCAGGAGAAGGAGGCAATGGTAATGAAGTATGTAAGAGGGGAGAAGGAGGCACTTGATCTGCGAAAGGAAAAAGAAACTCTTGAGAGGACACTCAGAGGGGCAAGTAAAGAGCTAGAGAAAAATGCTAACAAGATTAAGCAGCTGTCTCAGGATAAAGGGCGACTACAGCAACTTTATGAATCCCAAgtaagtagtatatccagtgtctgtttgtatcacttagttccacagtttta Alignment from Spaln_aa2Genome GCCAATAAGAAATGTGAAGAGGCCCGTCAGGAAAAGGAGGCAATGGTAATGAAGTATGTGAGAGGCGAGAAGGAGGCTCTAGACCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGATGCAAGTAAGGAATTGGAGAAAAACACTAACAAAATTAAGCAGCTGTCTCAGGAGAAAGGGCGGCTGCAGCAACTCTATGAATCGAAG cagttgtcgaaagtgcagtgaacattggtgccatttttgtcttcctttagGCAAATAAAAAATGCGAAGAGGCCCGTCAGGAGAAGGAGGCAATGGTAATGAAGTATGTAAGAGGGGAGAAGGAGGCACTTGATCTGCGAAAGGAAAAAGAAACTCTTGAGAGGACACTCAGAGGGGCAAGTAAAGAGCTAGAGAAAAATGCTAACAAGATTAAGCAGCTGTCTCAGGATAAAGGGCGACTACAGCAACTTTATGAATCCCAAgtaagtagtatatccagtgtctgtttgtatcacttagttccacagtttta Alignment from Spaln_nt2Genome GCCAATAAGAAATGTGAAGAGGCCCGTCAGGAAAAGGAGGCAATGGTAATGAAGTATGTGAGAGGCGAGAAGGAGGCTCTAGACCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGATGCAAGTAAGGAATTGGAGAAAAACACTAACAAAATTAAGCAGCTGTCTCAGGAGAAAGGGCGGCTGCAGCAACTCTATGAATCGAAG cagttgtcgaaagtgcagtgaacattggtgccatttttgtcttcctttagGCAAATAAAAAATGCGAAGAGGCCCGTCAGGAGAAGGAGGCAATGGTAATGAAGTATGTAAGAGGGGAGAAGGAGGCACTTGATCTGCGAAAGGAAAAAGAAACTCTTGAGAGGACACTCAGAGGGGCAAGTAAAGAGCTAGAGAAAAATGCTAACAAGATTAAGCAGCTGTCTCAGGATAAAGGGCGACTACAGCAACTTTATGAATCCCAAgtaagtagtatatccagtgtctgtttgtatcacttagttccacagtttta Alignment from Pairagon GCCAATAAGAAATGTGAAGAGGCCCGTCAGGAAAAGGAGGCAATGGTAATGAAGTATGTGAGAGGCGAGAAGGAGGCTCTAGACCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGATGCAAGTAAGGAATTGGAGAAAAACACTAACAAAATTAAGCAGCTGTCTCAGGAGAAAGGGCGGCTGCAGCAACTCTATGAATCGAAG cagttgtcgaaagtgcagtgaacattggtgccatttttgtcttcctttagGCAAATAAAAAATGCGAAGAGGCCCGTCAGGAGAAGGAGGCAATGGTAATGAAGTATGTAAGAGGGGAGAAGGAGGCACTTGATCTGCGAAAGGAAAAAGAAACTCTTGAGAGGACACTCAGAGGGGCAAGTAAAGAGCTAGAGAAAAATGCTAACAAGATTAAGCAGCTGTCTCAGGATAAAGGGCGACTACAGCAACTTTATGAATCCCAAgtaagtagtatatccagtgtctgtttgtatcacttagttccacagtttta Alignment from Exonerate_protein2genome GCCAATAAGAAATGTGAAGAGGCCCGTCAGGAAAAGGAGGCAATGGTAATGAAGTATGTGAGAGGCGAGAAGGAGGCTCTAGACCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGATGCAAGTAAGGAATTGGAGAAAAACACTAACAAAATTAAGCAGCTGTCTCAGGAGAAAGGGCGGCTGCAGCAACTCTATGAATCGAAG cagttgtcgaaagtgcagtgaacattggtgccatttttgtcttcctttagGCAAATAAAAAATGCGAAGAGGCCCGTCAGGAGAAGGAGGCAATGGTAATGAAGTATGTAAGAGGGGAGAAGGAGGCACTTGATCTGCGAAAGGAAAAAGAAACTCTTGAGAGGACACTCAGAGGGGCAAGTAAAGAGCTAGAGAAAAATGCTAACAAGATTAAGCAGCTGTCTCAGGATAAAGGGCGACTACAGCAACTTTATGAATCCCAAgtaagtagtatatccagtgtctgtttgtatcacttagttccacagtttta Alignment from Exonerate_coding2genome GCCAATAAGAAATGTGAAGAGGCCCGTCAGGAAAAGGAGGCAATGGTAATGAAGTATGTGAGAGGCGAGAAGGAGGCTCTAGACCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGATGCAAGTAAGGAATTGGAGAAAAACACTAACAAAATTAAGCAGCTGTCTCAGGAGAAAGGGCGGCTGCAGCAACTCTATGAATCGAAG cagttgtcgaaagtgcagtgaacattggtgccatttttgtcttcctttagGCAAATAAAAAATGCGAAGAGGCCCGTCAGGAGAAGGAGGCAATGGTAATGAAGTATGTAAGAGGGGAGAAGGAGGCACTTGATCTGCGAAAGGAAAAAGAAACTCTTGAGAGGACACTCAGAGGGGCAAGTAAAGAGCTAGAGAAAAATGCTAACAAGATTAAGCAGCTGTCTCAGGATAAAGGGCGACTACAGCAACTTTATGAATCCCAAgtaagtagtatatccagtgtctgtttgtatcacttagttccacagtttta Alignment from GeneWise GCCAATAAGAAATGTGAAGAGGCCCGTCAGGAAAAGGAGGCAATGGTAATGAAGTATGTGAGAGGCGAGAAGGAGGCTCTAGACCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGATGCAAGTAAGGAATTGGAGAAAAACACTAACAAAATTAAGCAGCTGTCTCAGGAGAAAGGGCGGCTGCAGCAACTCTATGAATCGAAG cagttgtcgaaagtgcagtgaacattggtgccatttttgtcttcctttagGCAAATAAAAAATGCGAAGAGGCCCGTCAGGAGAAGGAGGCAATGGTAATGAAGTATGTAAGAGGGGAGAAGGAGGCACTTGATCTGCGAAAGGAAAAAGAAACTCTTGAGAGGACACTCAGAGGGGCAAGTAAAGAGCTAGAGAAAAATGCTAACAAGATTAAGCAGCTGTCTCAGGATAAAGGGCGACTACAGCAACTTTATGAATCCCAAgtaagtagtatatccagtgtctgtttgtatcacttagttccacagtttta #### Abcc2_ID8822_6 --> 0 - 2 Original Alignment GCCCCATCAGCTACAGCTTCATTTCTGAGTAGCGTTACGTTTAGTTGGTATGACag aaacactgtaatactatgttttgaaatactgtaatctcactacaattcagGCAACATCAGCCACAGCTTCATTTCTGAGCAGTGTTACATTTAGTTGGTACGACaggtaattatggattaaagtacttccatcttctttctactatctatacacta Alignment from CESAR GCCCCATCAGCTACAGCTTCATTTCTGAGTAGCGTTACGTTTAGTTGGTATGACag aaacactgtaatactatgttttgaaatactgtaatctcactacaattcagGCAACATCAGCCACAGCTTCATTTCTGAGCAGTGTTACATTTAGTTGGTACGACaggtaattatggattaaagtacttccatcttctttctactatctatacacta Alignment from Spaln_aa2Genome GCCCCATCAGCTACAGCTTCATTTCTGAGTAGCGTTACGTTTAGTTGGTATGACAG aaacactgtaatactatgttttgaaatactgtaatctcactacaattcagGCAACATCAGCCACAGCTTCATTTCTGAGCAGTGTTACATTTAGTTGGTACGACAGgtaattatggattaaagtacttccatcttctttctactatctatacacta Alignment from Spaln_nt2Genome GCCCCATCAGCTACAGCTTCATTTCTGAGTAGCGTTACGTTTAGTTGGTATGACAG aaacactgtaatactatgttttgaaatactgtaatctcactacaattcagGCAACATCAGCCACAGCTTCATTTCTGAGCAGTGTTACATTTAGTTGGTACGACAGgtaattatggattaaagtacttccatcttctttctactatctatacacta Alignment from Pairagon GCCCCATCAGCTACAGCTTCATTTCTGAGTAGCGTTACGTTTAGTTGGTATGACAG aaacactgtaatactatgttttgaaatactgtaatctcactacaattcagGCAACATCAGCCACAGCTTCATTTCTGAGCAGTGTTACATTTAGTTGGTACGACAGgtaattatggattaaagtacttccatcttctttctactatctatacacta Alignment from Exonerate_protein2genome GCCCCATCAGCTACAGCTTCATTTCTGAGTAGCGTTACGTTTAGTTGGTATGACAG aaacactgtaatactatgttttgaaatactgtaatctcactacaattcagGCAACATCAGCCACAGCTTCATTTCTGAGCAGTGTTACATTTAGTTGGTACGACAGgtaattatggattaaagtacttccatcttctttctactatctatacacta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCCCCATCAGCTACAGCTTCATTTCTGAGTAGCGTTACGTTTAGTTGGTATGACAG aaacactgtaatactatgttttgaaatactgtaatctcactacaattcagGCAACATCAGCCACAGCTTCATTTCTGAGCAGTGTTACATTTAGTTGGTACGACAGgtaattatggattaaagtacttccatcttctttctactatctatacacta #### Abcc2_ID8824_8 --> 0 - 2 Original Alignment GAAGACTCGAAAAAGAAGAAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTACGTGGTGATCCTGAAGTCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGaa catatcctgtaagttcagagcctagggctaacaagaattattccttctagAAAGACTCAAAACAG---------AGGTCCGAGGCCACTAAAGACTTTCTCAAGACCTGGTTGGTCAAGGCACTCTTCAAAACATTCTATGTGGTAGTCCTTAAATCATTTATTCTGAAATTAGTACATGATATTCTGTTGTTTCTGAATCCTCAGGTCCTGgagtaggcgcacaaaactttcaaactcactagtcttgaagttgcacaagatg Alignment from CESAR GAAGACTCGAAAAAGAAGAAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTACGTGGTGATCCTGAAGTCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGaa catatcctgtaagttcagagcctagggctaacaagaattattccttctagAAAGACTCA---------AAACAGAGGTCCGAGGCCACTAAAGACTTTCTCAAGACCTGGTTGGTCAAGGCACTCTTCAAAACATTCTATGTGGTAGTCCTTAAATCATTTATTCTGAAATTAGTACATGATATTCTGTTGTTTCTGAATCCTCAGGTCCTGgagtaggcgcacaaaactttcaaactcactagtcttgaagttgcacaagatg Alignment from Spaln_aa2Genome GAAGACTCGAAAAAGAAGAAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTACGTGGTGATCCTGAAGTCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGAA catatcctgtaagttcagagcctagggctaacaagaattattccttctagAAAGACTCA---------AAACAGAGGTCCGAGGCCACTAAAGACTTTCTCAAGACCTGGTTGGTCAAGGCACTCTTCAAAACATTCTATGTGGTAGTCCTTAAATCATTTATTCTGAAATTAGTACATGATATTCTGTTGTTTCTGAATCCTCAGGTCCTGGAgtaggcgcacaaaactttcaaactcactagtcttgaagttgcacaagatg Alignment from Spaln_nt2Genome AAAGAAGAAAAA--GAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTACGTGGTGATCCTGAAGTCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGAA catatcctgtaagttcagagcctagggctaacaagaattattccttctagAAAGACTCAAAACAGAGGTCCGAGGCCACTAAAGACTTTCTCAAGACCTGGTTGGTCAAGGCACTCTTCAAAACATTCTATGTGGTAGTCCTTAAATCATTTATTCTGAAATTAGTACATGATATTCTGTTGTTTCTGAATCCTCAGGTCCTGGAgtaggcgcacaaaactttcaaactcactagtcttgaagttgcacaagatg Alignment from Pairagon GAAGACTCGAAAAAGAAGAAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTACGTGGTGATCCTGAAGTCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGAA catatcctgtaagttcagagcctagggctaacaagaattattccttctagAAAGACTC---------AAAACAGAGGTCCGAGGCCACTAAAGACTTTCTCAAGACCTGGTTGGTCAAGGCACTCTTCAAAACATTCTATGTGGTAGTCCTTAAATCATTTATTCTGAAATTAGTACATGATATTCTGTTGTTTCTGAATCCTCAGGTCCTGGAgtaggcgcacaaaactttcaaactcactagtcttgaagttgcacaagatg Alignment from Exonerate_protein2genome GAAGACTCGAAAAAGAAGAAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTACGTGGTGATCCTGAAGTCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGAA catatcctgtaagttcagagcctagggctaacaagaattattccttctagAAAGACTCA---------AAACAGAGGTCCGAGGCCACTAAAGACTTTCTCAAGACCTGGTTGGTCAAGGCACTCTTCAAAACATTCTATGTGGTAGTCCTTAAATCATTTATTCTGAAATTAGTACATGATATTCTGTTGTTTCTGAATCCTCAGGTCCTGGAgtaggcgcacaaaactttcaaactcactagtcttgaagttgcacaagatg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAAGACTCGAAAAAGAAGAAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTACGTGGTGATCCTGAAGTCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGAA catatcctgtaagttcagagcctagggctaacaagaattattccttctagAAAGACTCAAAACAGAGG---------TCCGAGGCCACTAAAGACTTTCTCAAGACCTGGTTGGTCAAGGCACTCTTCAAAACATTCTATGTGGTAGTCCTTAAATCATTTATTCTGAAATTAGTACATGATATTCTGTTGTTTCTGAATCCTCAGGTCCTGGAgtaggcgcacaaaactttcaaactcactagtcttgaagttgcacaagatg #### Abcc2_ID8829_13 --> 0 - 0 Original Alignment GTGTCCGTGATCACATTTTCTGTTTACGTCCTGGTGGATAGTCAAAATGTTTTGAACGCGGAGAAGGCTTTCACCTCCATCACCCTCTTCAATATCCTGCGCTTTCCTCTGGCCATGCTTCCCATGGTGATCTCTTCAGTCATCCAG attggctgcctgctctgaaacggttgatgacttctttcccacacttacagGTATCTCTGAATACATTTTCTGTTTACCTGCTAGTTGATAGTCAAAATGTCTCAAATGCAGAACAGGCCTTTACCTCTATCACCCTATTCAACATTTTGCATTTCTCATTAGCCATGCTCCCCATTGTGATTGCATCAGTCATCCAGgtgagtgatactatgcttataccctcaatgtgctaacagcagaattcaaa Alignment from CESAR GTGTCCGTGATCACATTTTCTGTTTACGTCCTGGTGGATAGTCAAAATGTTTTGAACGCGGAGAAGGCTTTCACCTCCATCACCCTCTTCAATATCCTGCGCTTTCCTCTGGCCATGCTTCCCATGGTGATCTCTTCAGTCATCCAG attggctgcctgctctgaaacggttgatgacttctttcccacacttacagGTATCTCTGAATACATTTTCTGTTTACCTGCTAGTTGATAGTCAAAATGTCTCAAATGCAGAACAGGCCTTTACCTCTATCACCCTATTCAACATTTTGCATTTCTCATTAGCCATGCTCCCCATTGTGATTGCATCAGTCATCCAGgtgagtgatactatgcttataccctcaatgtgctaacagcagaattcaaa Alignment from Spaln_aa2Genome GTGTCCGTGATCACATTTTCTGTTTACGTCCTGGTGGATAGTCAAAATGTTTTGAACGCGGAGAAGGCTTTCACCTCCATCACCCTCTTCAATATCCTGCGCTTTCCTCTGGCCATGCTTCCCATGGTGATCTCTTCAGTCATCCAG attggctgcctgctctgaaacggttgatgacttctttcccacacttacagGTATCTCTGAATACATTTTCTGTTTACCTGCTAGTTGATAGTCAAAATGTCTCAAATGCAGAACAGGCCTTTACCTCTATCACCCTATTCAACATTTTGCATTTCTCATTAGCCATGCTCCCCATTGTGATTGCATCAGTCATCCAGgtgagtgatactatgcttataccctcaatgtgctaacagcagaattcaaa Alignment from Spaln_nt2Genome GTGTCCGTGATCACATTTTCTGTTTACGTCCTGGTGGATAGTCAAAATGTTTTGAACGCGGAGAAGGCTTTCACCTCCATCACCCTCTTCAATATCCTGCGCTTTCCTCTGGCCATGCTTCCCATGGTGATCTCTTCAGTCATCCAG attggctgcctgctctgaaacggttgatgacttctttcccacacttacagGTATCTCTGAATACATTTTCTGTTTACCTGCTAGTTGATAGTCAAAATGTCTCAAATGCAGAACAGGCCTTTACCTCTATCACCCTATTCAACATTTTGCATTTCTCATTAGCCATGCTCCCCATTGTGATTGCATCAGTCATCCAGgtgagtgatactatgcttataccctcaatgtgctaacagcagaattcaaa Alignment from Pairagon GTGTCCGTGATCACATTTTCTGTTTACGTCCTGGTGGATAGTCAAAATGTTTTGAACGCGGAGAAGGCTTTCACCTCCATCACCCTCTTCAATATCCTGCGCTTTCCTCTGGCCATGCTTCCCATGGTGATCTCTTCAGTCATCCAG attggctgcctgctctgaaacggttgatgacttctttcccacacttacagGTATCTCTGAATACATTTTCTGTTTACCTGCTAGTTGATAGTCAAAATGTCTCAAATGCAGAACAGGCCTTTACCTCTATCACCCTATTCAACATTTTGCATTTCTCATTAGCCATGCTCCCCATTGTGATTGCATCAGTCATCCAGgtgagtgatactatgcttataccctcaatgtgctaacagcagaattcaaa Alignment from Exonerate_protein2genome GTGTCCGTGATCACATTTTCTGTTTACGTCCTGGTGGATAGTCAAAATGTTTTGAACGCGGAGAAGGCTTTCACCTCCATCACCCTCTTCAATATCCTGCGCTTTCCTCTGGCCATGCTTCCCATGGTGATCTCTTCAGTCATCCAG attggctgcctgctctgaaacggttgatgacttctttcccacacttacagGTATCTCTGAATACATTTTCTGTTTACCTGCTAGTTGATAGTCAAAATGTCTCAAATGCAGAACAGGCCTTTACCTCTATCACCCTATTCAACATTTTGCATTTCTCATTAGCCATGCTCCCCATTGTGATTGCATCAGTCATCCAGgtgagtgatactatgcttataccctcaatgtgctaacagcagaattcaaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGTCCGTGATCACATTTTCTGTTTACGTCCTGGTGGATAGTCAAAATGTTTTGAACGCGGAGAAGGCTTTCACCTCCATCACCCTCTTCAATATCCTGCGCTTTCCTCTGGCCATGCTTCCCATGGTGATCTCTTCAGTCATCCAG attggctgcctgctctgaaacggttgatgacttctttcccacacttacagGTATCTCTGAATACATTTTCTGTTTACCTGCTAGTTGATAGTCAAAATGTCTCAAATGCAGAACAGGCCTTTACCTCTATCACCCTATTCAACATTTTGCATTTCTCATTAGCCATGCTCCCCATTGTGATTGCATCAGTCATCCAGgtgagtgatactatgcttataccctcaatgtgctaacagcagaattcaaa #### Abcc2_ID8831_15 --> 2 - 2 Original Alignment atAAAGCTGTGCAGTTCTCAGAAGCCTCTTTTACTTGGGACCGGGACTTGGAAGCCACAATCCAAga atctttttggcagctcaacatgtcactatcacccggaccccctcacacagatAAATCCGTACAGTTCTCAGAGGCTTCATTTACCTGGGATCAGGATTTGGAAGCAACAATACAGgagtgagatctagtgtcaacgagcataagagctgctcatcaataccacacaa Alignment from CESAR atAAAGCTGTGCAGTTCTCAGAAGCCTCTTTTACTTGGGACCGGGACTTGGAAGCCACAATCCAAga atctttttggcagctcaacatgtcactatcacccggaccccctcacacagatAAATCCGTACAGTTCTCAGAGGCTTCATTTACCTGGGATCAGGATTTGGAAGCAACAATACAGgagtgagatctagtgtcaacgagcataagagctgctcatcaataccacacaa Alignment from Spaln_aa2Genome ATAAAGCTGTGCAGTTCTCAGAAGCCTCTTTTACTTGGGACCGGGACTTGGAAGCCACAATCCAAGA atctttttggcagctcaacatgtcactatcacccggaccccctcacacagATAAATCCGTACAGTTCTCAGAGGCTTCATTTACCTGGGATCAGGATTTGGAAGCAACAATACAGGAgtgagatctagtgtcaacgagcataagagctgctcatcaataccacacaa Alignment from Spaln_nt2Genome ATAAAGCTGTGCAGTTCTCAGAAGCCTCTTTTACTTGGGACCGGGACTTGGAAGCCACAATCCAAGA atctttttggcagctcaacatgtcactatcacccggaccccctcacacagATAAATCCGTACAGTTCTCAGAGGCTTCATTTACCTGGGATCAGGATTTGGAAGCAACAATACAGGAgtgagatctagtgtcaacgagcataagagctgctcatcaataccacacaa Alignment from Pairagon ATAAAGCTGTGCAGTTCTCAGAAGCCTCTTTTACTTGGGACCGGGACTTGGAAGCCACAATCCAAGA atctttttggcagctcaacatgtcactatcacccggaccccctcacacagATAAATCCGTACAGTTCTCAGAGGCTTCATTTACCTGGGATCAGGATTTGGAAGCAACAATACAGGAgtgagatctagtgtcaacgagcataagagctgctcatcaataccacacaa Alignment from Exonerate_protein2genome ATAAAGCTGTGCAGTTCTCAGAAGCCTCTTTTACTTGGGACCGGGACTTGGAAGCCACAATCCAAGA atctttttggcagctcaacatgtcactatcacccggaccccctcacacagATAAATCCGTACAGTTCTCAGAGGCTTCATTTACCTGGGATCAGGATTTGGAAGCAACAATACAGGAgtgagatctagtgtcaacgagcataagagctgctcatcaataccacacaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATAAAGCTGTGCAGTTCTCAGAAGCCTCTTTTACTTGGGACCGGGACTTGGAAGCCACAATCCAAGA atctttttggcagctcaacatgtcactatcacccggaccccctcacacagATAAATCCGTACAGTTCTCAGAGGCTTCATTTACCTGGGATCAGGATTTGGAAGCAACAATACAGGAgtgagatctagtgtcaacgagcataagagctgctcatcaataccacacaa #### Abcc2_ID8833_17 --> 0 - 0 Original Alignment GGCTCCATAGCCTACGTCCCTCAGCAGGCCTGGATTCAGAACGGGACCATCAAAGATAACATCCTGTTTGGGTCAGAATACGATGAAAAGAAGTACCAGCGAGTTATCGAAGCGTGCGCTCTCCTCCCAGACTTGGAAATGTTGCCTGGAGGAGACATGGCTGAGATCGGAGAGAAG gtctcgacttcccaaagtagctattgaatctgatttcaccctctctacagGGTTCTATAGCCTATGTCCCACGGCATGCTTGGATCCAGAATGGGACCATTAAAGCC------CTGTTTGGATCAGAATATGAGGAAAAGGAATATCAGCGGGTTATTGAGACAGGTGCT---CTTCTGGATCCGGAGATGTTACCCAGTAGAGACATGGCAGATATTGGGGAAAAAgtgagttggagggtggaagatcgagtgaatgcaatgtgtatgggaggctg Alignment from CESAR GGCTCCATAGCCTACGTCCCTCAGCAGGCCTGGATTCAGAACGGGACCATCAAAGATAACATCCTGTTTGGGTCAGAATACGATGAAAAGAAGTACCAGCGAGTTATCGAAGCGTGCGCTCTCCTCCCAGACTTGGAAATGTTGCCTGGAGGAGACATGGCTGAGATCGGAGAGAAG gtctcgacttcccaaagtagctattgaatctgatttcaccctctctacagGGTTCTATAGCCTATGTCCCACGGCATGCTTGGATCCAGAATGGGACCATTAAA------GCCCTGTTTGGATCAGAATATGAGGAAAAGGAATATCAGCGGGTTATTGAGACAGGTGCTCTTCTG---GATCCGGAGATGTTACCCAGTAGAGACATGGCAGATATTGGGGAAAAAgtgagttggagggtggaagatcgagtgaatgcaatgtgtatgggaggctg Alignment from Spaln_aa2Genome GGCTCCATAGCCTACGTCCCTCAGCAGGCCTGGATTCAGAACGGGACCATCAAAGATAACATCCTGTTTGGGTCAGAATACGATGAAAAGAAGTACCAGCGAGTTATCGAAGCGTGCGCTCTCCTCCCAGACTTGGAAATGTTGCCTGGAGGAGACATGGCTGAGATCGGAGAGAAG gtctcgacttcccaaagtagctattgaatctgatttcaccctctctacagGGTTCTATAGCCTATGTCCCACGGCATGCTTGGATCCAGAATGGGACCATTAAA------GCCCTGTTTGGATCAGAATATGAGGAAAAGGAATATCAGCGGGTTATTGAGACAGGTGCTCTTCTG---GATCCGGAGATGTTACCCAGTAGAGACATGGCAGATATTGGGGAAAAAgtgagttggagggtggaagatcgagtgaatgcaatgtgtatgggaggctg Alignment from Spaln_nt2Genome GGCTCCATAGCCTACGTCCCTCAGCAGGCCTGGATTCAGAACGGGACCATCAAAGATAACATCCTGTTTGGGTCAGAATACGATGAAAAGAAGTACCAGCGAGTTATCGAAGCGTGCGCTCTCCTCCCAGACTTGGAAATGTTGCCTGGAGGAGACATGGCTGAGATCGGAGAGAAG gtctcgacttcccaaagtagctattgaatctgatttcaccctctctacagGGTTCTATAGCCTATGTCCCACGGCATGCTTGGATCCAGAATGGGACCATTAAAG------CCCTGTTTGGATCAGAATATGAGGAAAAGGAATATCAGCGGGTTATTGAGACAGGTGCTCTTCT---GGATCCGGAGATGTTACCCAGTAGAGACATGGCAGATATTGGGGAAAAAgtgagttggagggtggaagatcgagtgaatgcaatgtgtatgggaggctg Alignment from Pairagon GGCTCCATAGCCTACGTCCCTCAGCAGGCCTGGATTCAGAACGGGACCATCAAAGATAACATCCTGTTTGGGTCAGAATACGATGAAAAGAAGTACCAGCGAGTTATCGAAGCGTGCGCTCTCCTCCCAGACTTGGAAATGTTGCCTGGAGGAGACATGGCTGAGATCGGAGAGAAG gtctcgacttcccaaagtagctattgaatctgatttcaccctctctacagGGTTCTATAGCCTATGTCCCACGGCATGCTTGGATCCAGAATGGGACCATTAAAG------CCCTGTTTGGATCAGAATATGAGGAAAAGGAATATCAGCGGGTTATTGAGACAGGTGCTCTTCT---GGATCCGGAGATGTTACCCAGTAGAGACATGGCAGATATTGGGGAAAAAgtgagttggagggtggaagatcgagtgaatgcaatgtgtatgggaggctg Alignment from Exonerate_protein2genome GGCTCCATAGCCTACGTCCCTCAGCAGGCCTGGATTCAGAACGGGACCATCAAAGATAACATCCTGTTTGGGTCAGAATACGATGAAAAGAAGTACCAGCGAGTTATCGAAGCGTGCGCTCTCCTCCCAGACTTGGAAATGTTGCCTGGAGGAGACATGGCTGAGATCGGAGAGAAG gtctcgacttcccaaagtagctattgaatctgatttcaccctctctacagGGTTCTATAGCCTATGTCCCACGGCATGCTTGGATCCAGAATGGGACCATTAAA------GCCCTGTTTGGATCAGAATATGAGGAAAAGGAATATCAGCGGGTTATTGAGACAGGTGCTCTTCTG---GATCCGGAGATGTTACCCAGTAGAGACATGGCAGATATTGGGGAAAAAgtgagttggagggtggaagatcgagtgaatgcaatgtgtatgggaggctg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGCTCCATAGCCTACGTCCCTCAGCAGGCCTGGATTCAGAACGGGACCATCAAAGATAACATCCTGTTTGGGTCAGAATACGATGAAAAGAAGTACCAGCGAGTTATCGAAGCGTGCGCTCTCCTCCCAGACTTGGAAATGTTGCCTGGAGGAGACATGGCTGAGATCGGAGAGAAG gtctcgacttcccaaagtagctattgaatctgatttcaccctctctacagGGTTCTATAGCCTATGTCCCACGGCATGCTTGGATCCAGAATGGGACCATTAAA------GCCCTGTTTGGATCAGAATATGAGGAAAAGGAATATCAGCGGGTTATTGAGACAGGTGCTCTTCTG---GATCCGGAGATGTTACCCAGTAGAGACATGGCAGATATTGGGGAAAAAgtgagttggagggtggaagatcgagtgaatgcaatgtgtatgggaggctg #### Abcc2_ID8845_29 --> 0 - 0 Original Alignment GTCGGTGTGGTGGGCAGGACCGGAGCTGGAAAATCATCCCTCACAAACTGCCTCTTCAGAATCTTAGAGTCTGCAGGTGGCCAGATCATCATTGATGGGATTGATATTGCCTCCATTGGACTGCACGACCTTCGAGGGAGACTGACCATCATTCCCCAG ttgacattgtaaatgccatgtcaagttatcctgtcctttgtccatttcagGTTGGTGTGGTGGACAGGAGTGGGGCAGGAAAATCATCATTGACAAACTGTCTGTTA---ATCTCAGAGTCTGCAGGTGGCCAGATGATCATGGATGGGATTGATGCTTCCTCCATTGGGCTGCATGACTTACAGGGTAGACTTACTATCATACCCCAAgtaggttaaagtgggcatactcaggggaagcaatgacagagtccagaaga Alignment from CESAR GTCGGTGTGGTGGGCAGGACCGGAGCTGGAAAATCATCCCTCACAAACTGCCTCTTCAGAATCTTAGAGTCTGCAGGTGGCCAGATCATCATTGATGGGATTGATATTGCCTCCATTGGACTGCACGACCTTCGAGGGAGACTGACCATCATTCCCCAG ttgacattgtaaatgccatgtcaagttatcctgtcctttgtccatttcagGTTGGTGTGGTGGACAGGAGTGGGGCAGGAAAATCATCATTGACAAACTGTCTGTTA---ATCTCAGAGTCTGCAGGTGGCCAGATGATCATGGATGGGATTGATGCTTCCTCCATTGGGCTGCATGACTTACAGGGTAGACTTACTATCATACCCCAAgtaggttaaagtgggcatactcaggggaagcaatgacagagtccagaaga Alignment from Spaln_aa2Genome GTCGGTGTGGTGGGCAGGACCGGAGCTGGAAAATCATCCCTCACAAACTGCCTCTTCAGAATCTTAGAGTCTGCAGGTGGCCAGATCATCATTGATGGGATTGATATTGCCTCCATTGGACTGCACGACCTTCGAGGGAGACTGACCATCATTCCCCAG ttgacattgtaaatgccatgtcaagttatcctgtcctttgtccatttcagGTTGGTGTGGTGGACAGGAGTGGGGCAGGAAAATCATCATTGACAAACTGTCTGTTA---ATCTCAGAGTCTGCAGGTGGCCAGATGATCATGGATGGGATTGATGCTTCCTCCATTGGGCTGCATGACTTACAGGGTAGACTTACTATCATACCCCAAgtaggttaaagtgggcatactcaggggaagcaatgacagagtccagaaga Alignment from Spaln_nt2Genome GTCGGTGTGGTGGGCAGGACCGGAGCTGGAAAATCATCCCTCACAAACTGCCTCTTCAGAATCTTAGAGTCTGCAGGTGGCCAGATCATCATTGATGGGATTGATATTGCCTCCATTGGACTGCACGACCTTCGAGGGAGACTGACCATCATTCCCCAG ttgacattgtaaatgccatgtcaagttatcctgtcctttgtccatttcagGTTGGTGTGGTGGACAGGAGTGGGGCAGGAAAATCATCATTGACAAACTGTCTGTT---AATCTCAGAGTCTGCAGGTGGCCAGATGATCATGGATGGGATTGATGCTTCCTCCATTGGGCTGCATGACTTACAGGGTAGACTTACTATCATACCCCAAgtaggttaaagtgggcatactcaggggaagcaatgacagagtccagaaga Alignment from Pairagon GTCGGTGTGGTGGGCAGGACCGGAGCTGGAAAATCATCCCTCACAAACTGCCTCTTCAGAATCTTAGAGTCTGCAGGTGGCCAGATCATCATTGATGGGATTGATATTGCCTCCATTGGACTGCACGACCTTCGAGGGAGACTGACCATCATTCCCCAG ttgacattgtaaatgccatgtcaagttatcctgtcctttgtccatttcagGTTGGTGTGGTGGACAGGAGTGGGGCAGGAAAATCATCATTGACAAACTGTCTGTT---AATCTCAGAGTCTGCAGGTGGCCAGATGATCATGGATGGGATTGATGCTTCCTCCATTGGGCTGCATGACTTACAGGGTAGACTTACTATCATACCCCAAgtaggttaaagtgggcatactcaggggaagcaatgacagagtccagaaga Alignment from Exonerate_protein2genome GTCGGTGTGGTGGGCAGGACCGGAGCTGGAAAATCATCCCTCACAAACTGCCTCTTCAGAATCTTAGAGTCTGCAGGTGGCCAGATCATCATTGATGGGATTGATATTGCCTCCATTGGACTGCACGACCTTCGAGGGAGACTGACCATCATTCCCCAG ttgacattgtaaatgccatgtcaagttatcctgtcctttgtccatttcagGTTGGTGTGGTGGACAGGAGTGGGGCAGGAAAATCATCATTGACAAACTGTCTGTTA---ATCTCAGAGTCTGCAGGTGGCCAGATGATCATGGATGGGATTGATGCTTCCTCCATTGGGCTGCATGACTTACAGGGTAGACTTACTATCATACCCCAAgtaggttaaagtgggcatactcaggggaagcaatgacagagtccagaaga Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTCGGTGTGGTGGGCAGGACCGGAGCTGGAAAATCATCCCTCACAAACTGCCTCTTCAGAATCTTAGAGTCTGCAGGTGGCCAGATCATCATTGATGGGATTGATATTGCCTCCATTGGACTGCACGACCTTCGAGGGAGACTGACCATCATTCCCCAG ttgacattgtaaatgccatgtcaagttatcctgtcctttgtccatttcagGTTGGTGTGGTGGACAGGAGTGGGGCAGGAAAATCATCATTGACAAACTGTCTGTTA---ATCTCAGAGTCTGCAGGTGGCCAGATGATCATGGATGGGATTGATGCTTCCTCCATTGGGCTGCATGACTTACAGGGTAGACTTACTATCATACCCCAAgtaggttaaagtgggcatactcaggggaagcaatgacagagtccagaaga #### Abcc2_ID8847_31 --> 1 - 2 Original Alignment cATAGGGCAGAGGCAGCTCCTATGCCTGGGTAGGGCCGTGCTTCGAAAATCCAAAATCCTGGTCCTGGACGAAGCCACAGCCGCAGTGGATCTAGAGACGGATAGCCTCATTCAGACGACCATCCGGAACGAGTTCTCCCAGTGCACGGTCATCACTATCGCACACAGGCTGCACACCATCATGGACAGTGACaa gtatatgtggcattctttaaccaacaagggaatccccttttcttttacagcATAGGGCAGAGGCAACTCATATGCCTGGGTAGGGCTGTGCTCCGAAAATCCAAAATCCTTGTGCTGGACGAAGCCACAGCCGCTGTGGATTTGGAGACGGATAGCCTCATTCAGAGAACCATCCGGAACAAGTTCTCTCACTCAACAGTCATCACCATTGCACACAGGTTACACACCATCATGGACAGTGACatgtgagtgtgtgagaattgcatacatattactggaattgtcatgcaaaact Alignment from CESAR cATAGGGCAGAGGCAGCTCCTATGCCTGGGTAGGGCCGTGCTTCGAAAATCCAAAATCCTGGTCCTGGACGAAGCCACAGCCGCAGTGGATCTAGAGACGGATAGCCTCATTCAGACGACCATCCGGAACGAGTTCTCCCAGTGCACGGTCATCACTATCGCACACAGGCTGCACACCATCATGGACAGTGACaa gtatatgtggcattctttaaccaacaagggaatccccttttcttttacagcATAGGGCAGAGGCAACTCATATGCCTGGGTAGGGCTGTGCTCCGAAAATCCAAAATCCTTGTGCTGGACGAAGCCACAGCCGCTGTGGATTTGGAGACGGATAGCCTCATTCAGAGAACCATCCGGAACAAGTTCTCTCACTCAACAGTCATCACCATTGCACACAGGTTACACACCATCATGGACAGTGACatgtgagtgtgtgagaattgcatacatattactggaattgtcatgcaaaact Alignment from Spaln_aa2Genome CATAGGGCAGAGGCAGCTCCTATGCCTGGGTAGGGCCGTGCTTCGAAAATCCAAAATCCTGGTCCTGGACGAAGCCACAGCCGCAGTGGATCTAGAGACGGATAGCCTCATTCAGACGACCATCCGGAACGAGTTCTCCCAGTGCACGGTCATCACTATCGCACACAGGCTGCACACCATCATGGACAGTGACAA gtatatgtggcattctttaaccaacaagggaatccccttttcttttacagCATAGGGCAGAGGCAACTCATATGCCTGGGTAGGGCTGTGCTCCGAAAATCCAAAATCCTTGTGCTGGACGAAGCCACAGCCGCTGTGGATTTGGAGACGGATAGCCTCATTCAGAGAACCATCCGGAACAAGTTCTCTCACTCAACAGTCATCACCATTGCACACAGGTTACACACCATCATGGACAGTGACATgtgagtgtgtgagaattgcatacatattactggaattgtcatgcaaaact Alignment from Spaln_nt2Genome CATAGGGCAGAGGCAGCTCCTATGCCTGGGTAGGGCCGTGCTTCGAAAATCCAAAATCCTGGTCCTGGACGAAGCCACAGCCGCAGTGGATCTAGAGACGGATAGCCTCATTCAGACGACCATCCGGAACGAGTTCTCCCAGTGCACGGTCATCACTATCGCACACAGGCTGCACACCATCATGGACAGTGACAA gtatatgtggcattctttaaccaacaagggaatccccttttcttttacagCATAGGGCAGAGGCAACTCATATGCCTGGGTAGGGCTGTGCTCCGAAAATCCAAAATCCTTGTGCTGGACGAAGCCACAGCCGCTGTGGATTTGGAGACGGATAGCCTCATTCAGAGAACCATCCGGAACAAGTTCTCTCACTCAACAGTCATCACCATTGCACACAGGTTACACACCATCATGGACAGTGACATgtgagtgtgtgagaattgcatacatattactggaattgtcatgcaaaact Alignment from Pairagon CATAGGGCAGAGGCAGCTCCTATGCCTGGGTAGGGCCGTGCTTCGAAAATCCAAAATCCTGGTCCTGGACGAAGCCACAGCCGCAGTGGATCTAGAGACGGATAGCCTCATTCAGACGACCATCCGGAACGAGTTCTCCCAGTGCACGGTCATCACTATCGCACACAGGCTGCACACCATCATGGACAGTGACAA gtatatgtggcattctttaaccaacaagggaatccccttttcttttacagCATAGGGCAGAGGCAACTCATATGCCTGGGTAGGGCTGTGCTCCGAAAATCCAAAATCCTTGTGCTGGACGAAGCCACAGCCGCTGTGGATTTGGAGACGGATAGCCTCATTCAGAGAACCATCCGGAACAAGTTCTCTCACTCAACAGTCATCACCATTGCACACAGGTTACACACCATCATGGACAGTGACATgtgagtgtgtgagaattgcatacatattactggaattgtcatgcaaaact Alignment from Exonerate_protein2genome CATAGGGCAGAGGCAGCTCCTATGCCTGGGTAGGGCCGTGCTTCGAAAATCCAAAATCCTGGTCCTGGACGAAGCCACAGCCGCAGTGGATCTAGAGACGGATAGCCTCATTCAGACGACCATCCGGAACGAGTTCTCCCAGTGCACGGTCATCACTATCGCACACAGGCTGCACACCATCATGGACAGTGACAA gtatatgtggcattctttaaccaacaagggaatccccttttcttttacagCATAGGGCAGAGGCAACTCATATGCCTGGGTAGGGCTGTGCTCCGAAAATCCAAAATCCTTGTGCTGGACGAAGCCACAGCCGCTGTGGATTTGGAGACGGATAGCCTCATTCAGAGAACCATCCGGAACAAGTTCTCTCACTCAACAGTCATCACCATTGCACACAGGTTACACACCATCATGGACAGTGACATgtgagtgtgtgagaattgcatacatattactggaattgtcatgcaaaact Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CATAGGGCAGAGGCAGCTCCTATGCCTGGGTAGGGCCGTGCTTCGAAAATCCAAAATCCTGGTCCTGGACGAAGCCACAGCCGCAGTGGATCTAGAGACGGATAGCCTCATTCAGACGACCATCCGGAACGAGTTCTCCCAGTGCACGGTCATCACTATCGCACACAGGCTGCACACCATCATGGACAGTGACAA gtatatgtggcattctttaaccaacaagggaatccccttttcttttacagCATAGGGCAGAGGCAACTCATATGCCTGGGTAGGGCTGTGCTCCGAAAATCCAAAATCCTTGTGCTGGACGAAGCCACAGCCGCTGTGGATTTGGAGACGGATAGCCTCATTCAGAGAACCATCCGGAACAAGTTCTCTCACTCAACAGTCATCACCATTGCACACAGGTTACACACCATCATGGACAGTGACATgtgagtgtgtgagaattgcatacatattactggaattgtcatgcaaaact #### Acsl5_ID11601_6 --> 2 - 0 Original Alignment ctGATATCCCTGTGGTCATCTGTGATACACCCCAAAAGGCAACAATGCTAGTAGAAAATGTGGAAAAGGGCCTCACACCAGGCCTGAAGACGATCATCCTCATGGACCCTTTTGATGACGACCTGATGAAAAGAGGAGAAAAGTGTGGAGTTGAGATGTTATCCCTGCATGATGCGGAG gctgttccctgcttgggacattagggtgaccactctactttgtttttcagctGACATACCAGTGGTCAACTGTGATACACCTGAGAAGGCAACAATGGTAGTAGAAAATGTGGCACAAGGCCTGACACCAGGCCTAAAAACGGTCATCCTGATGGACCGGTTTGATGATGATTTAATGAAACGAGGAGAAAAGTGTGGAGTTGAGATGTTATCTCTACATGATGCAGAGgcaagcatcaaaagcagcttgatgctggtgagtgcgtattggtatctgaa Alignment from CESAR ctGATATCCCTGTGGTCATCTGTGATACACCCCAAAAGGCAACAATGCTAGTAGAAAATGTGGAAAAGGGCCTCACACCAGGCCTGAAGACGATCATCCTCATGGACCCTTTTGATGACGACCTGATGAAAAGAGGAGAAAAGTGTGGAGTTGAGATGTTATCCCTGCATGATGCGGAG gctgttccctgcttgggacattagggtgaccactctactttgtttttcagctGACATACCAGTGGTCAACTGTGATACACCTGAGAAGGCAACAATGGTAGTAGAAAATGTGGCACAAGGCCTGACACCAGGCCTAAAAACGGTCATCCTGATGGACCGGTTTGATGATGATTTAATGAAACGAGGAGAAAAGTGTGGAGTTGAGATGTTATCTCTACATGATGCAGAGgcaagcatcaaaagcagcttgatgctggtgagtgcgtattggtatctgaa Alignment from Spaln_aa2Genome CTGATATCCCTGTGGTCATCTGTGATACACCCCAAAAGGCAACAATGCTAGTAGAAAATGTGGAAAAGGGCCTCACACCAGGCCTGAAGACGATCATCCTCATGGACCCTTTTGATGACGACCTGATGAAAAGAGGAGAAAAGTGTGGAGTTGAGATGTTATCCCTGCATGATGCGGAG gctgttccctgcttgggacattagggtgaccactctactttgtttttcagCTGACATACCAGTGGTCAACTGTGATACACCTGAGAAGGCAACAATGGTAGTAGAAAATGTGGCACAAGGCCTGACACCAGGCCTAAAAACGGTCATCCTGATGGACCGGTTTGATGATGATTTAATGAAACGAGGAGAAAAGTGTGGAGTTGAGATGTTATCTCTACATGATGCAGAGgcaagcatcaaaagcagcttgatgctggtgagtgcgtattggtatctgaa Alignment from Spaln_nt2Genome CTGATATCCCTGTGGTCATCTGTGATACACCCCAAAAGGCAACAATGCTAGTAGAAAATGTGGAAAAGGGCCTCACACCAGGCCTGAAGACGATCATCCTCATGGACCCTTTTGATGACGACCTGATGAAAAGAGGAGAAAAGTGTGGAGTTGAGATGTTATCCCTGCATGATGCGGAG gctgttccctgcttgggacattagggtgaccactctactttgtttttcagCTGACATACCAGTGGTCAACTGTGATACACCTGAGAAGGCAACAATGGTAGTAGAAAATGTGGCACAAGGCCTGACACCAGGCCTAAAAACGGTCATCCTGATGGACCGGTTTGATGATGATTTAATGAAACGAGGAGAAAAGTGTGGAGTTGAGATGTTATCTCTACATGATGCAGAGgcaagcatcaaaagcagcttgatgctggtgagtgcgtattggtatctgaa Alignment from Pairagon CTGATATCCCTGTGGTCATCTGTGATACACCCCAAAAGGCAACAATGCTAGTAGAAAATGTGGAAAAGGGCCTCACACCAGGCCTGAAGACGATCATCCTCATGGACCCTTTTGATGACGACCTGATGAAAAGAGGAGAAAAGTGTGGAGTTGAGATGTTATCCCTGCATGATGCGGAG gctgttccctgcttgggacattagggtgaccactctactttgtttttcagCTGACATACCAGTGGTCAACTGTGATACACCTGAGAAGGCAACAATGGTAGTAGAAAATGTGGCACAAGGCCTGACACCAGGCCTAAAAACGGTCATCCTGATGGACCGGTTTGATGATGATTTAATGAAACGAGGAGAAAAGTGTGGAGTTGAGATGTTATCTCTACATGATGCAGAGgcaagcatcaaaagcagcttgatgctggtgagtgcgtattggtatctgaa Alignment from Exonerate_protein2genome CTGATATCCCTGTGGTCATCTGTGATACACCCCAAAAGGCAACAATGCTAGTAGAAAATGTGGAAAAGGGCCTCACACCAGGCCTGAAGACGATCATCCTCATGGACCCTTTTGATGACGACCTGATGAAAAGAGGAGAAAAGTGTGGAGTTGAGATGTTATCCCTGCATGATGCGGAG gctgttccctgcttgggacattagggtgaccactctactttgtttttcagCTGACATACCAGTGGTCAACTGTGATACACCTGAGAAGGCAACAATGGTAGTAGAAAATGTGGCACAAGGCCTGACACCAGGCCTAAAAACGGTCATCCTGATGGACCGGTTTGATGATGATTTAATGAAACGAGGAGAAAAGTGTGGAGTTGAGATGTTATCTCTACATGATGCAGAGgcaagcatcaaaagcagcttgatgctggtgagtgcgtattggtatctgaa Alignment from Exonerate_coding2genome CTGATATCCCTGTGGTCATCTGTGATACACCCCAAAAGGCAACAATGCTAGTAGAAAATGTGGAAAAGGGCCTCACACCAGGCCTGAAGACGATCATCCTCATGGACCCTTTTGATGACGACCTGATGAAAAGAGGAGAAAAGTGTGGAGTTGAGATGTTATCCCTGCATGATGCGGAG gctgttccctgcttgggacattagggtgaccactctactttgtttttcagCTGACATACCAGTGGTCAACTGTGATACACCTGAGAAGGCAACAATGGTAGTAGAAAATGTGGCACAAGGCCTGACACCAGGCCTAAAAACGGTCATCCTGATGGACCGGTTTGATGATGATTTAATGAAACGAGGAGAAAAGTGTGGAGTTGAGATGTTATCTCTACATGATGCAGAGgcaagcatcaaaagcagcttgatgctggtgagtgcgtattggtatctgaa Alignment from GeneWise CTGATATCCCTGTGGTCATCTGTGATACACCCCAAAAGGCAACAATGCTAGTAGAAAATGTGGAAAAGGGCCTCACACCAGGCCTGAAGACGATCATCCTCATGGACCCTTTTGATGACGACCTGATGAAAAGAGGAGAAAAGTGTGGAGTTGAGATGTTATCCCTGCATGATGCGGAGAATATAGGCAAAGAGAACTTCAAAAAACCAGTG gctgttccctgcttgggacattagggtgaccactctactttgtttttcagCTGACATACCAGTGGTCAACTGTGATACACCTGAGAAGGCAACAATGGTAGTAGAAAATGTGGCACAAGGCCTGACACCAGGCCTAAAAACGGTCATCCTGATGGACCGGTTTGATGATGATTTAATGAAACGAGGAGAAAAGTGTGGAGTTGAGATGTTATCTCTACATGATGCAGAGGCAAGCATCAAAAGCAGCTTGATG------CTGgtgagtgcgtattggta #### Acsl5_ID11603_8 --> 0 - 1 Original Alignment CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACCAGTGGAACTACAg tcacctctgtgatttatattgttggcttgagcccacatcttcctcctcagCCACCAAAGCCAGAAGATCTCAGCCTGATTTGCTTTGCTAGTGGGACTACAagtgaggggtctgaaatcccacagtgttacagaaaaaatcacacaccagct Alignment from CESAR CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACCAGTGGAACTACAg tcacctctgtgatttatattgttggcttgagcccacatcttcctcctcagCCACCAAAGCCAGAAGATCTCAGCCTGATTTGCTTTGCTAGTGGGACTACAagtgaggggtctgaaatcccacagtgttacagaaaaaatcacacaccagct Alignment from Spaln_aa2Genome CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACCAGTGGAACTACAG tcacctctgtgatttatattgttggcttgagcccacatcttcctcctcagCCACCAAAGCCAGAAGATCTCAGCCTGATTTGCTTTGCTAGTGGGACTACAAgtgaggggtctgaaatcccacagtgttacagaaaaaatcacacaccagct Alignment from Spaln_nt2Genome CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACCAGTGGAACTACAG tcacctctgtgatttatattgttggcttgagcccacatcttcctcctcagCCACCAAAGCCAGAAGATCTCAGCCTGATTTGCTTTGCTAGTGGGACTACAAgtgaggggtctgaaatcccacagtgttacagaaaaaatcacacaccagct Alignment from Pairagon CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACCAGTGGAACTACAG tcacctctgtgatttatattgttggcttgagcccacatcttcctcctcagCCACCAAAGCCAGAAGATCTCAGCCTGATTTGCTTTGCTAGTGGGACTACAAgtgaggggtctgaaatcccacagtgttacagaaaaaatcacacaccagct Alignment from Exonerate_protein2genome CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACCAGTGGAACTACAG tcacctctgtgatttatattgttggcttgagcccacatcttcctcctcagCCACCAAAGCCAGAAGATCTCAGCCTGATTTGCTTTGCTAGTGGGACTACAAgtgaggggtctgaaatcccacagtgttacagaaaaaatcacacaccagct Alignment from Exonerate_coding2genome CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACCAGTGGAACTACAG tcacctctgtgatttatattgttggcttgagcccacatcttcctcctcagCCACCAAAGCCAGAAGATCTCAGCCTGATTTGCTTTGCTAGTGGGACTACAAgtgaggggtctgaaatcccacagtgttacagaaaaaatcacacaccagct Alignment from GeneWise CCTCCGAAGCCAGAGGATCTGAGCGTCATCTGTTTCACCAGTGGAACTACAG tcacctctgtgatttatattgttggcttgagcccacatcttcctcctcagCCACCAAAGCCAGAAGATCTCAGCCTGATTTGCTTTGCTAGTGGGACTACAAgtgaggggtctgaaatcccacagtgttacagaaaaaatcacacaccagct #### Acsl5_ID11604_9 --> 2 - 0 Original Alignment gtGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG taaccaccaagcaactggtgttctttctctttttccttgtccactgctaggtGATCCTGAAGGAGCCATGTTGACACATGAAAATGTTGTTTCTAACATGGCTGCTTTTCTTAAACTTCTAGAGgtgagtaggattcaccacaatctaaattgacaatatgagtttcatggtca Alignment from CESAR gtGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG taaccaccaagcaactggtgttctttctctttttccttgtccactgctaggtGATCCTGAAGGAGCCATGTTGACACATGAAAATGTTGTTTCTAACATGGCTGCTTTTCTTAAACTTCTAGAGgtgagtaggattcaccacaatctaaattgacaatatgagtttcatggtca Alignment from Spaln_aa2Genome GTGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG taaccaccaagcaactggtgttctttctctttttccttgtccactgctagGTGATCCTGAAGGAGCCATGTTGACACATGAAAATGTTGTTTCTAACATGGCTGCTTTTCTTAAACTTCTAGAGgtgagtaggattcaccacaatctaaattgacaatatgagtttcatggtca Alignment from Spaln_nt2Genome GTGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG taaccaccaagcaactggtgttctttctctttttccttgtccactgctagGTGATCCTGAAGGAGCCATGTTGACACATGAAAATGTTGTTTCTAACATGGCTGCTTTTCTTAAACTTCTAGAGgtgagtaggattcaccacaatctaaattgacaatatgagtttcatggtca Alignment from Pairagon GTGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG taaccaccaagcaactggtgttctttctctttttccttgtccactgctagGTGATCCTGAAGGAGCCATGTTGACACATGAAAATGTTGTTTCTAACATGGCTGCTTTTCTTAAACTTCTAGAGgtgagtaggattcaccacaatctaaattgacaatatgagtttcatggtca Alignment from Exonerate_protein2genome GTGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG taaccaccaagcaactggtgttctttctctttttccttgtccactgctagGTGATCCTGAAGGAGCCATGTTGACACATGAAAATGTTGTTTCTAACATGGCTGCTTTTCTTAAACTTCTAGAGgtgagtaggattcaccacaatctaaattgacaatatgagtttcatggtca Alignment from Exonerate_coding2genome GTGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG taaccaccaagcaactggtgttctttctctttttccttgtccactgctagGTGATCCTGAAGGAGCCATGTTGACACATGAAAATGTTGTTTCTAACATGGCTGCTTTTCTTAAACTTCTAGAGgtgagtaggattcaccacaatctaaattgacaatatgagtttcatggtca Alignment from GeneWise GTGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG taaccaccaagcaactggtgttctttctctttttccttgtccactgctagGTGATCCTGAAGGAGCCATGTTGACACATGAAAATGTTGTTTCTAACATGGCTGCTTTTCTTAAACTTCTAGAGgtgagtaggattcaccacaatctaaattgacaatatgagtttcatggtca #### Acsl5_ID11612_17 --> 0 - 0 Original Alignment AATGGAACTCTGAAAATTGTTGACCGGAAGAAGAATATTTTCAAGTTGGCACAAGGAGAATACATTGCCCCAGAGAAGATTGAAAATGTTTATTCCAGGAGCAGACCAGTATTGCAAGTTTTTGTCCATGGGGAGAGCTTACGG gtcaacagcaaacctaccactagagtatcatgcatccattcttcctgcagAATGGAATGCTGAAAATTGTGGGCCAAAAGAAGAACATTTTTAAATTGGCACAGGGAGAGTACATTGCCCCAGAGAAAATTGAAAATGTTCGTTCTAGGAGCAGACCAGTACTGCAAGTCTTTGTTCATGGGGAGAGTTTTCGCgtgaggtgacaggatgatcgcttgcaattgctattttctaagtccttgca Alignment from CESAR AATGGAACTCTGAAAATTGTTGACCGGAAGAAGAATATTTTCAAGTTGGCACAAGGAGAATACATTGCCCCAGAGAAGATTGAAAATGTTTATTCCAGGAGCAGACCAGTATTGCAAGTTTTTGTCCATGGGGAGAGCTTACGG gtcaacagcaaacctaccactagagtatcatgcatccattcttcctgcagAATGGAATGCTGAAAATTGTGGGCCAAAAGAAGAACATTTTTAAATTGGCACAGGGAGAGTACATTGCCCCAGAGAAAATTGAAAATGTTCGTTCTAGGAGCAGACCAGTACTGCAAGTCTTTGTTCATGGGGAGAGTTTTCGCgtgaggtgacaggatgatcgcttgcaattgctattttctaagtccttgca Alignment from Spaln_aa2Genome AATGGAACTCTGAAAATTGTTGACCGGAAGAAGAATATTTTCAAGTTGGCACAAGGAGAATACATTGCCCCAGAGAAGATTGAAAATGTTTATTCCAGGAGCAGACCAGTATTGCAAGTTTTTGTCCATGGGGAGAGCTTACGG gtcaacagcaaacctaccactagagtatcatgcatccattcttcctgcagAATGGAATGCTGAAAATTGTGGGCCAAAAGAAGAACATTTTTAAATTGGCACAGGGAGAGTACATTGCCCCAGAGAAAATTGAAAATGTTCGTTCTAGGAGCAGACCAGTACTGCAAGTCTTTGTTCATGGGGAGAGTTTTCGCgtgaggtgacaggatgatcgcttgcaattgctattttctaagtccttgca Alignment from Spaln_nt2Genome AATGGAACTCTGAAAATTGTTGACCGGAAGAAGAATATTTTCAAGTTGGCACAAGGAGAATACATTGCCCCAGAGAAGATTGAAAATGTTTATTCCAGGAGCAGACCAGTATTGCAAGTTTTTGTCCATGGGGAGAGCTTACGG gtcaacagcaaacctaccactagagtatcatgcatccattcttcctgcagAATGGAATGCTGAAAATTGTGGGCCAAAAGAAGAACATTTTTAAATTGGCACAGGGAGAGTACATTGCCCCAGAGAAAATTGAAAATGTTCGTTCTAGGAGCAGACCAGTACTGCAAGTCTTTGTTCATGGGGAGAGTTTTCGCgtgaggtgacaggatgatcgcttgcaattgctattttctaagtccttgca Alignment from Pairagon AATGGAACTCTGAAAATTGTTGACCGGAAGAAGAATATTTTCAAGTTGGCACAAGGAGAATACATTGCCCCAGAGAAGATTGAAAATGTTTATTCCAGGAGCAGACCAGTATTGCAAGTTTTTGTCCATGGGGAGAGCTTACGG gtcaacagcaaacctaccactagagtatcatgcatccattcttcctgcagAATGGAATGCTGAAAATTGTGGGCCAAAAGAAGAACATTTTTAAATTGGCACAGGGAGAGTACATTGCCCCAGAGAAAATTGAAAATGTTCGTTCTAGGAGCAGACCAGTACTGCAAGTCTTTGTTCATGGGGAGAGTTTTCGCgtgaggtgacaggatgatcgcttgcaattgctattttctaagtccttgca Alignment from Exonerate_protein2genome AATGGAACTCTGAAAATTGTTGACCGGAAGAAGAATATTTTCAAGTTGGCACAAGGAGAATACATTGCCCCAGAGAAGATTGAAAATGTTTATTCCAGGAGCAGACCAGTATTGCAAGTTTTTGTCCATGGGGAGAGCTTACGG gtcaacagcaaacctaccactagagtatcatgcatccattcttcctgcagAATGGAATGCTGAAAATTGTGGGCCAAAAGAAGAACATTTTTAAATTGGCACAGGGAGAGTACATTGCCCCAGAGAAAATTGAAAATGTTCGTTCTAGGAGCAGACCAGTACTGCAAGTCTTTGTTCATGGGGAGAGTTTTCGCgtgaggtgacaggatgatcgcttgcaattgctattttctaagtccttgca Alignment from Exonerate_coding2genome AATGGAACTCTGAAAATTGTTGACCGGAAGAAGAATATTTTCAAGTTGGCACAAGGAGAATACATTGCCCCAGAGAAGATTGAAAATGTTTATTCCAGGAGCAGACCAGTATTGCAAGTTTTTGTCCATGGGGAGAGCTTACGG gtcaacagcaaacctaccactagagtatcatgcatccattcttcctgcagAATGGAATGCTGAAAATTGTGGGCCAAAAGAAGAACATTTTTAAATTGGCACAGGGAGAGTACATTGCCCCAGAGAAAATTGAAAATGTTCGTTCTAGGAGCAGACCAGTACTGCAAGTCTTTGTTCATGGGGAGAGTTTTCGCgtgaggtgacaggatgatcgcttgcaattgctattttctaagtccttgca Alignment from GeneWise AATGGAACTCTGAAAATTGTTGACCGGAAGAAGAATATTTTCAAGTTGGCACAAGGAGAATACATTGCCCCAGAGAAGATTGAAAATGTTTATTCCAGGAGCAGACCAGTATTGCAAGTTTTTGTCCATGGGGAGAGCTTACGG gtcaacagcaaacctaccactagagtatcatgcatccattcttcctgcagAATGGAATGCTGAAAATTGTGGGCCAAAAGAAGAACATTTTTAAATTGGCACAGGGAGAGTACATTGCCCCAGAGAAAATTGAAAATGTTCGTTCTAGGAGCAGACCAGTACTGCAAGTCTTTGTTCATGGGGAGAGTTTTCGCgtgaggtgacaggatgatcgcttgcaattgctattttctaagtccttgca #### Acta2_ID6910_4 --> 0 - 1 Original Alignment ATTATGTTTGAGACCTTCAATGTCCCCGCCATGTATGTGGCTATTCAGGCTGTGCTGTCCCTCTATGCCTCTGGACGTACAACTg tctgtggggaattatggataaatcccctgacgctggtttttctcttacagATTATGTTTGAGACCTTTAACGTCCCTGCCATGTATGTGACTATTCAGGCTGTGCTGTCACTCTATGCCTCTGGACGTACAACTggtaacagtccagcatggtgacaaaaatatctctatcatgaagtttgtgca Alignment from CESAR ATTATGTTTGAGACCTTCAATGTCCCCGCCATGTATGTGGCTATTCAGGCTGTGCTGTCCCTCTATGCCTCTGGACGTACAACTg tctgtggggaattatggataaatcccctgacgctggtttttctcttacagATTATGTTTGAGACCTTTAACGTCCCTGCCATGTATGTGACTATTCAGGCTGTGCTGTCACTCTATGCCTCTGGACGTACAACTggtaacagtccagcatggtgacaaaaatatctctatcatgaagtttgtgca Alignment from Spaln_aa2Genome ATTATGTTTGAGACCTTCAATGTCCCCGCCATGTATGTGGCTATTCAGGCTGTGCTGTCCCTCTATGCCTCTGGACGTACAACTG tctgtggggaattatggataaatcccctgacgctggtttttctcttacagATTATGTTTGAGACCTTTAACGTCCCTGCCATGTATGTGACTATTCAGGCTGTGCTGTCACTCTATGCCTCTGGACGTACAACTGgtaacagtccagcatggtgacaaaaatatctctatcatgaagtttgtgca Alignment from Spaln_nt2Genome ATTATGTTTGAGACCTTCAATGTCCCCGCCATGTATGTGGCTATTCAGGCTGTGCTGTCCCTCTATGCCTCTGGACGTACAACTG tctgtggggaattatggataaatcccctgacgctggtttttctcttacagATTATGTTTGAGACCTTTAACGTCCCTGCCATGTATGTGACTATTCAGGCTGTGCTGTCACTCTATGCCTCTGGACGTACAACTGgtaacagtccagcatggtgacaaaaatatctctatcatgaagtttgtgca Alignment from Pairagon ATTATGTTTGAGACCTTCAATGTCCCCGCCATGTATGTGGCTATTCAGGCTGTGCTGTCCCTCTATGCCTCTGGACGTACAACTG tctgtggggaattatggataaatcccctgacgctggtttttctcttacagATTATGTTTGAGACCTTTAACGTCCCTGCCATGTATGTGACTATTCAGGCTGTGCTGTCACTCTATGCCTCTGGACGTACAACTGgtaacagtccagcatggtgacaaaaatatctctatcatgaagtttgtgca Alignment from Exonerate_protein2genome ATTATGTTTGAGACCTTCAATGTCCCCGCCATGTATGTGGCTATTCAGGCTGTGCTGTCCCTCTATGCCTCTGGACGTACAACTG tctgtggggaattatggataaatcccctgacgctggtttttctcttacagATTATGTTTGAGACCTTTAACGTCCCTGCCATGTATGTGACTATTCAGGCTGTGCTGTCACTCTATGCCTCTGGACGTACAACTGgtaacagtccagcatggtgacaaaaatatctctatcatgaagtttgtgca Alignment from Exonerate_coding2genome ATTATGTTTGAGACCTTCAATGTCCCCGCCATGTATGTGGCTATTCAGGCTGTGCTGTCCCTCTATGCCTCTGGACGTACAACTG tctgtggggaattatggataaatcccctgacgctggtttttctcttacagATTATGTTTGAGACCTTTAACGTCCCTGCCATGTATGTGACTATTCAGGCTGTGCTGTCACTCTATGCCTCTGGACGTACAACTGgtaacagtccagcatggtgacaaaaatatctctatcatgaagtttgtgca Alignment from GeneWise ATTATGTTTGAGACCTTCAATGTCCCCGCCATGTATGTGGCTATTCAGGCTGTGCTGTCCCTCTATGCCTCTGGACGTACAACTG tctgtggggaattatggataaatcccctgacgctggtttttctcttacagATTATGTTTGAGACCTTTAACGTCCCTGCCATGTATGTGACTATTCAGGCTGTGCTGTCACTCTATGCCTCTGGACGTACAACTGgtaacagtccagcatggtgacaaaaatatctctatcatgaagtttgtgca #### Acta2_ID6912_2 --> 0 - 0 Original Alignment GGAGTAATGGTTGGAATGGGCCAAAAAGACAGCTATGTGGGGGATGAAGCCCAGAGCAAGAGAGGGATCCTGACGCTGAAGTATCCGATAGAACACGGCATCATCACCAACTGGGACGACATGGAAAAG acaagttctccaagcgatcagttgatatcctccatcaattgtttctacagGGAGTTATGGCAGGTATGGGCAAAAAGGACAGCTATCTGGGTGATGAAGCTCAGAGTAAGAGAGGGATTTTAATGCTAAAGTATCCAATAGAACATGGCATTATCACAAAATGGGAGGACATGGAAAAGgtaaggcaaggccgtgtgtccttgttcttgacaagcaaaagtattgcttt Alignment from CESAR GGAGTAATGGTTGGAATGGGCCAAAAAGACAGCTATGTGGGGGATGAAGCCCAGAGCAAGAGAGGGATCCTGACGCTGAAGTATCCGATAGAACACGGCATCATCACCAACTGGGACGACATGGAAAAG acaagttctccaagcgatcagttgatatcctccatcaattgtttctacagGGAGTTATGGCAGGTATGGGCAAAAAGGACAGCTATCTGGGTGATGAAGCTCAGAGTAAGAGAGGGATTTTAATGCTAAAGTATCCAATAGAACATGGCATTATCACAAAATGGGAGGACATGGAAAAGgtaaggcaaggccgtgtgtccttgttcttgacaagcaaaagtattgcttt Alignment from Spaln_aa2Genome GGAGTAATGGTTGGAATGGGCCAAAAAGACAGCTATGTGGGGGATGAAGCCCAGAGCAAGAGAGGGATCCTGACGCTGAAGTATCCGATAGAACACGGCATCATCACCAACTGGGACGACATGGAAAAG acaagttctccaagcgatcagttgatatcctccatcaattgtttctacagGGAGTTATGGCAGGTATGGGCAAAAAGGACAGCTATCTGGGTGATGAAGCTCAGAGTAAGAGAGGGATTTTAATGCTAAAGTATCCAATAGAACATGGCATTATCACAAAATGGGAGGACATGGAAAAGgtaaggcaaggccgtgtgtccttgttcttgacaagcaaaagtattgcttt Alignment from Spaln_nt2Genome GGAGTAATGGTTGGAATGGGCCAAAAAGACAGCTATGTGGGGGATGAAGCCCAGAGCAAGAGAGGGATCCTGACGCTGAAGTATCCGATAGAACACGGCATCATCACCAACTGGGACGACATGGAAAAG acaagttctccaagcgatcagttgatatcctccatcaattgtttctacagGGAGTTATGGCAGGTATGGGCAAAAAGGACAGCTATCTGGGTGATGAAGCTCAGAGTAAGAGAGGGATTTTAATGCTAAAGTATCCAATAGAACATGGCATTATCACAAAATGGGAGGACATGGAAAAGgtaaggcaaggccgtgtgtccttgttcttgacaagcaaaagtattgcttt Alignment from Pairagon GGAGTAATGGTTGGAATGGGCCAAAAAGACAGCTATGTGGGGGATGAAGCCCAGAGCAAGAGAGGGATCCTGACGCTGAAGTATCCGATAGAACACGGCATCATCACCAACTGGGACGACATGGAAAAG acaagttctccaagcgatcagttgatatcctccatcaattgtttctacagGGAGTTATGGCAGGTATGGGCAAAAAGGACAGCTATCTGGGTGATGAAGCTCAGAGTAAGAGAGGGATTTTAATGCTAAAGTATCCAATAGAACATGGCATTATCACAAAATGGGAGGACATGGAAAAGgtaaggcaaggccgtgtgtccttgttcttgacaagcaaaagtattgcttt Alignment from Exonerate_protein2genome GGAGTAATGGTTGGAATGGGCCAAAAAGACAGCTATGTGGGGGATGAAGCCCAGAGCAAGAGAGGGATCCTGACGCTGAAGTATCCGATAGAACACGGCATCATCACCAACTGGGACGACATGGAAAAG acaagttctccaagcgatcagttgatatcctccatcaattgtttctacagGGAGTTATGGCAGGTATGGGCAAAAAGGACAGCTATCTGGGTGATGAAGCTCAGAGTAAGAGAGGGATTTTAATGCTAAAGTATCCAATAGAACATGGCATTATCACAAAATGGGAGGACATGGAAAAGgtaaggcaaggccgtgtgtccttgttcttgacaagcaaaagtattgcttt Alignment from Exonerate_coding2genome GGAGTAATGGTTGGAATGGGCCAAAAAGACAGCTATGTGGGGGATGAAGCCCAGAGCAAGAGAGGGATCCTGACGCTGAAGTATCCGATAGAACACGGCATCATCACCAACTGGGACGACATGGAAAAG acaagttctccaagcgatcagttgatatcctccatcaattgtttctacagGGAGTTATGGCAGGTATGGGCAAAAAGGACAGCTATCTGGGTGATGAAGCTCAGAGTAAGAGAGGGATTTTAATGCTAAAGTATCCAATAGAACATGGCATTATCACAAAATGGGAGGACATGGAAAAGgtaaggcaaggccgtgtgtccttgttcttgacaagcaaaagtattgcttt Alignment from GeneWise GGAGTAATGGTTGGAATGGGCCAAAAAGACAGCTATGTGGGGGATGAAGCCCAGAGCAAGAGAGGGATCCTGACGCTGAAGTATCCGATAGAACACGGCATCATCACCAACTGGGACGACATGGAAAAG acaagttctccaagcgatcagttgatatcctccatcaattgtttctacagGGAGTTATGGCAGGTATGGGCAAAAAGGACAGCTATCTGGGTGATGAAGCTCAGAGTAAGAGAGGGATTTTAATGCTAAAGTATCCAATAGAACATGGCATTATCACAAAATGGGAGGACATGGAAAAGgtaaggcaaggccgtgtgtccttgttcttgacaagcaaaagtattgcttt #### Actn3_ID690_20 --> 0 - 0 Original Alignment GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG atccctctctctctaatttaaaacatatatgtcatccttatttcttccagGGGGAAGTGGAGTCTGATCGAATCATGACAATGGTTGGCCCCAATGCAGCTGGAGTTGTAAACTTTCAGGCTTTCATAGACTCCATGACAAGAAAGACTGCTGAGACAGACATAGCAGAACAGGTTGTCGCCTCATTG---ATCCTGACAGGTGATAAAgtaagtttctttgatgtgtatggttatgatcctaacacatgacccataaa Alignment from CESAR GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG atccctctctctctaatttaaaacatatatgtcatccttatttcttccagGGGGAAGTGGAGTCTGATCGAATCATGACAATGGTTGGCCCCAATGCAGCTGGAGTTGTAAACTTTCAGGCTTTCATAGACTCCATGACAAGAAAGACTGCTGAGACAGACATAGCAGAACAGGTTGTCGCCTCATTG---ATCCTGACAGGTGATAAAgtaagtttctttgatgtgtatggttatgatcctaacacatgacccataaa Alignment from Spaln_aa2Genome GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG atccctctctctctaatttaaaacatatatgtcatccttatttcttccagGGGGAAGTGGAGTCTGATCGAATCATGACAATGGTTGGCCCCAATGCAGCTGGAGTTGTAAACTTTCAGGCTTTCATAGACTCCATGACAAGAAAGACTGCTGAGACAGACATAGCAGAACAGGTTGTCGCCTCATTG---ATCCTGACAGGTGATAAAgtaagtttctttgatgtgtatggttatgatcctaacacatgacccataaa Alignment from Spaln_nt2Genome GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG atccctctctctctaatttaaaacatatatgtcatccttatttcttccagGGGGAAGTGGAGTCTGATCGAATCATGACAATGGTTGGCCCCAATGCAGCTGGAGTTGTAAACTTTCAGGCTTTCATAGACTCCATGACAAGAAAGACTGCTGAGACAGACATAGCAGAACAGGTTGTCGCCTCATT---GATCCTGACAGGTGATAAAgtaagtttctttgatgtgtatggttatgatcctaacacatgacccataaa Alignment from Pairagon GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG atccctctctctctaatttaaaacatatatgtcatccttatttcttccagGGGGAAGTGGAGTCTGATCGAATCATGACAATGGTTGGCCCCAATGCAGCTGGAGTTGTAAACTTTCAGGCTTTCATAGACTCCATGACAAGAAAGACTGCTGAGACAGACATAGCAGAACAGGTTGTCGCCTCATT---GATCCTGACAGGTGATAAAgtaagtttctttgatgtgtatggttatgatcctaacacatgacccataaa Alignment from Exonerate_protein2genome GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG atccctctctctctaatttaaaacatatatgtcatccttatttcttccagGGGGAAGTGGAGTCTGATCGAATCATGACAATGGTTGGCCCCAATGCAGCTGGAGTTGTAAACTTTCAGGCTTTCATAGACTCCATGACAAGAAAGACTGCTGAGACAGACATAGCAGAACAGGTTGTCGCCTCATTG---ATCCTGACAGGTGATAAAgtaagtttctttgatgtgtatggttatgatcctaacacatgacccataaa Alignment from Exonerate_coding2genome GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG atccctctctctctaatttaaaacatatatgtcatccttatttcttccagGGGGAAGTGGAGTCTGATCGAATCATGACAATGGTTGGCCCCAATGCAGCTGGAGTTGTAAACTTTCAGGCTTTCATAGACTCCATGACAAGAAAGACTGCTGAGACAGACATAGCAGAACAGGTTGTCGCCTCATTG---ATCCTGACAGGTGATAAAgtaagtttctttgatgtgtatggttatgatcctaacacatgacccataaa Alignment from GeneWise GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG atccctctctctctaatttaaaacatatatgtcatccttatttcttccagGGGGAAGTGGAGTCTGATCGAATCATGACAATGGTTGGCCCCAATGCAGCTGGAGTTGTAAACTTTCAGGCTTTCATAGACTCCATGACAAGAAAGACTGCTGAGACAGACATAGCAGAACAGGTTGTCGCCTCATTG---ATCCTGACAGGTGATAAAgtaagtttctttgatgtgtatggttatgatcctaacacatgacccataaa #### Actn3_ID698_12 --> 2 - 2 Original Alignment gcAAAGAGGAAATGTTAAACCAGCACGACTACGAGTCAGCCTCGCTGCAGGAGGTGCGTGCGCTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTGGCTGCGCACCAAGACCGGGTGGAACACATCGCGGCCCTGGCCCAGGAACTCaa cacagattttgtctaccgctacatagggccttctctccccctacatccaggcAAAGAGGAGACATTAAACCAGCATGACTATGAGTCAGCCTCACTGCAGGATGTACGAGCACTCTTGCGACGTCATGAGGCCTTTGAGAGTGACCTAGCTGCACACCAAGACCGGGTGGAACACATTGCAGCCCTGGCCCAGGAACTCaagttggtatggctagggacagtgcatcagcctcattggacccttgcccttt Alignment from CESAR gcAAAGAGGAAATGTTAAACCAGCACGACTACGAGTCAGCCTCGCTGCAGGAGGTGCGTGCGCTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTGGCTGCGCACCAAGACCGGGTGGAACACATCGCGGCCCTGGCCCAGGAACTCaa cacagattttgtctaccgctacatagggccttctctccccctacatccaggcAAAGAGGAGACATTAAACCAGCATGACTATGAGTCAGCCTCACTGCAGGATGTACGAGCACTCTTGCGACGTCATGAGGCCTTTGAGAGTGACCTAGCTGCACACCAAGACCGGGTGGAACACATTGCAGCCCTGGCCCAGGAACTCaagttggtatggctagggacagtgcatcagcctcattggacccttgcccttt Alignment from Spaln_aa2Genome GCAAAGAGGAAATGTTAAACCAGCACGACTACGAGTCAGCCTCGCTGCAGGAGGTGCGTGCGCTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTGGCTGCGCACCAAGACCGGGTGGAACACATCGCGGCCCTGGCCCAGGAACTCAA cacagattttgtctaccgctacatagggccttctctccccctacatccagGCAAAGAGGAGACATTAAACCAGCATGACTATGAGTCAGCCTCACTGCAGGATGTACGAGCACTCTTGCGACGTCATGAGGCCTTTGAGAGTGACCTAGCTGCACACCAAGACCGGGTGGAACACATTGCAGCCCTGGCCCAGGAACTCAAgttggtatggctagggacagtgcatcagcctcattggacccttgcccttt Alignment from Spaln_nt2Genome GCAAAGAGGAAATGTTAAACCAGCACGACTACGAGTCAGCCTCGCTGCAGGAGGTGCGTGCGCTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTGGCTGCGCACCAAGACCGGGTGGAACACATCGCGGCCCTGGCCCAGGAACTCAA cacagattttgtctaccgctacatagggccttctctccccctacatccagGCAAAGAGGAGACATTAAACCAGCATGACTATGAGTCAGCCTCACTGCAGGATGTACGAGCACTCTTGCGACGTCATGAGGCCTTTGAGAGTGACCTAGCTGCACACCAAGACCGGGTGGAACACATTGCAGCCCTGGCCCAGGAACTCAAgttggtatggctagggacagtgcatcagcctcattggacccttgcccttt Alignment from Pairagon GCAAAGAGGAAATGTTAAACCAGCACGACTACGAGTCAGCCTCGCTGCAGGAGGTGCGTGCGCTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTGGCTGCGCACCAAGACCGGGTGGAACACATCGCGGCCCTGGCCCAGGAACTCAA cacagattttgtctaccgctacatagggccttctctccccctacatccagGCAAAGAGGAGACATTAAACCAGCATGACTATGAGTCAGCCTCACTGCAGGATGTACGAGCACTCTTGCGACGTCATGAGGCCTTTGAGAGTGACCTAGCTGCACACCAAGACCGGGTGGAACACATTGCAGCCCTGGCCCAGGAACTCAAgttggtatggctagggacagtgcatcagcctcattggacccttgcccttt Alignment from Exonerate_protein2genome GCAAAGAGGAAATGTTAAACCAGCACGACTACGAGTCAGCCTCGCTGCAGGAGGTGCGTGCGCTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTGGCTGCGCACCAAGACCGGGTGGAACACATCGCGGCCCTGGCCCAGGAACTCAA cacagattttgtctaccgctacatagggccttctctccccctacatccagGCAAAGAGGAGACATTAAACCAGCATGACTATGAGTCAGCCTCACTGCAGGATGTACGAGCACTCTTGCGACGTCATGAGGCCTTTGAGAGTGACCTAGCTGCACACCAAGACCGGGTGGAACACATTGCAGCCCTGGCCCAGGAACTCAAgttggtatggctagggacagtgcatcagcctcattggacccttgcccttt Alignment from Exonerate_coding2genome GCAAAGAGGAAATGTTAAACCAGCACGACTACGAGTCAGCCTCGCTGCAGGAGGTGCGTGCGCTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTGGCTGCGCACCAAGACCGGGTGGAACACATCGCGGCCCTGGCCCAGGAACTCAA cacagattttgtctaccgctacatagggccttctctccccctacatccagGCAAAGAGGAGACATTAAACCAGCATGACTATGAGTCAGCCTCACTGCAGGATGTACGAGCACTCTTGCGACGTCATGAGGCCTTTGAGAGTGACCTAGCTGCACACCAAGACCGGGTGGAACACATTGCAGCCCTGGCCCAGGAACTCAAgttggtatggctagggacagtgcatcagcctcattggacccttgcccttt Alignment from GeneWise GCAAAGAGGAAATGTTAAACCAGCACGACTACGAGTCAGCCTCGCTGCAGGAGGTGCGTGCGCTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTGGCTGCGCACCAAGACCGGGTGGAACACATCGCGGCCCTGGCCCAGGAACTCAA cacagattttgtctaccgctacatagggccttctctccccctacatccagGCAAAGAGGAGACATTAAACCAGCATGACTATGAGTCAGCCTCACTGCAGGATGTACGAGCACTCTTGCGACGTCATGAGGCCTTTGAGAGTGACCTAGCTGCACACCAAGACCGGGTGGAACACATTGCAGCCCTGGCCCAGGAACTCAAgttggtatggctagggacagtgcatcagcctcattggacccttgcccttt #### Actn3_ID699_11 --> 0 - 1 Original Alignment GACATAGCCAATGCGTGGCGGGGACTGGAGCAGGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCGGAGATCAGGCGTCTGCAGAGGCTTCAGCACCTGGCTGAGAAGTTCCAACAGAAGGCTTCCCTGCATGAAGCTTGGACCCGGg gggtgggacttagctatttgttttggatgcctcgctgtcccatcatcaagGACATAGCCAATGCTTGGCATGGGCTGAAGCAAGTGGAGAAGGGCTATGAGGATTGGCTGCTTTCAGAGATCAGGTGTCTGCAGAGGCTTCAGCTCTTGGCTGAAAAATTCCAACAAAAGGCTTCTCTGCATGAAGCTTGGACTCGAggtgagttcaatacaatagcaagggtacataactaggatagatgataaaaa Alignment from CESAR GACATAGCCAATGCGTGGCGGGGACTGGAGCAGGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCGGAGATCAGGCGTCTGCAGAGGCTTCAGCACCTGGCTGAGAAGTTCCAACAGAAGGCTTCCCTGCATGAAGCTTGGACCCGGg gggtgggacttagctatttgttttggatgcctcgctgtcccatcatcaagGACATAGCCAATGCTTGGCATGGGCTGAAGCAAGTGGAGAAGGGCTATGAGGATTGGCTGCTTTCAGAGATCAGGTGTCTGCAGAGGCTTCAGCTCTTGGCTGAAAAATTCCAACAAAAGGCTTCTCTGCATGAAGCTTGGACTCGAggtgagttcaatacaatagcaagggtacataactaggatagatgataaaaa Alignment from Spaln_aa2Genome GACATAGCCAATGCGTGGCGGGGACTGGAGCAGGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCGGAGATCAGGCGTCTGCAGAGGCTTCAGCACCTGGCTGAGAAGTTCCAACAGAAGGCTTCCCTGCATGAAGCTTGGACCCGGG gggtgggacttagctatttgttttggatgcctcgctgtcccatcatcaagGACATAGCCAATGCTTGGCATGGGCTGAAGCAAGTGGAGAAGGGCTATGAGGATTGGCTGCTTTCAGAGATCAGGTGTCTGCAGAGGCTTCAGCTCTTGGCTGAAAAATTCCAACAAAAGGCTTCTCTGCATGAAGCTTGGACTCGAGgtgagttcaatacaatagcaagggtacataactaggatagatgataaaaa Alignment from Spaln_nt2Genome GACATAGCCAATGCGTGGCGGGGACTGGAGCAGGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCGGAGATCAGGCGTCTGCAGAGGCTTCAGCACCTGGCTGAGAAGTTCCAACAGAAGGCTTCCCTGCATGAAGCTTGGACCCGGG gggtgggacttagctatttgttttggatgcctcgctgtcccatcatcaagGACATAGCCAATGCTTGGCATGGGCTGAAGCAAGTGGAGAAGGGCTATGAGGATTGGCTGCTTTCAGAGATCAGGTGTCTGCAGAGGCTTCAGCTCTTGGCTGAAAAATTCCAACAAAAGGCTTCTCTGCATGAAGCTTGGACTCGAGgtgagttcaatacaatagcaagggtacataactaggatagatgataaaaa Alignment from Pairagon GACATAGCCAATGCGTGGCGGGGACTGGAGCAGGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCGGAGATCAGGCGTCTGCAGAGGCTTCAGCACCTGGCTGAGAAGTTCCAACAGAAGGCTTCCCTGCATGAAGCTTGGACCCGGG gggtgggacttagctatttgttttggatgcctcgctgtcccatcatcaagGACATAGCCAATGCTTGGCATGGGCTGAAGCAAGTGGAGAAGGGCTATGAGGATTGGCTGCTTTCAGAGATCAGGTGTCTGCAGAGGCTTCAGCTCTTGGCTGAAAAATTCCAACAAAAGGCTTCTCTGCATGAAGCTTGGACTCGAGgtgagttcaatacaatagcaagggtacataactaggatagatgataaaaa Alignment from Exonerate_protein2genome CGGACATAGCCAATGCGTGGCGGGGACTGGAGCAGGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCGGAGATCAGGCGTCTGCAGAGGCTTCAGCACCTGGCTGAGAAGTTCCAACAGAAGGCTTCCCTGCATGAAGCTTGGACCCGGG gggtgggacttagctatttgttttggatgcctcgctgtcccatcatcaAGGACATAGCCAATGCTTGGCATGGGCTGAAGCAAGTGGAGAAGGGCTATGAGGATTGGCTGCTTTCAGAGATCAGGTGTCTGCAGAGGCTTCAGCTCTTGGCTGAAAAATTCCAACAAAAGGCTTCTCTGCATGAAGCTTGGACTCGAGgtgagttcaatacaatagcaagggtacataactaggatagatgataaaaa Alignment from Exonerate_coding2genome CGGACATAGCCAATGCGTGGCGGGGACTGGAGCAGGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCGGAGATCAGGCGTCTGCAGAGGCTTCAGCACCTGGCTGAGAAGTTCCAACAGAAGGCTTCCCTGCATGAAGCTTGGACCCGGG gggtgggacttagctatttgttttggatgcctcgctgtcccatcatcaAGGACATAGCCAATGCTTGGCATGGGCTGAAGCAAGTGGAGAAGGGCTATGAGGATTGGCTGCTTTCAGAGATCAGGTGTCTGCAGAGGCTTCAGCTCTTGGCTGAAAAATTCCAACAAAAGGCTTCTCTGCATGAAGCTTGGACTCGAGgtgagttcaatacaatagcaagggtacataactaggatagatgataaaaa Alignment from GeneWise GACATAGCCAATGCGTGGCGGGGACTGGAGCAGGTAGAGAAGGGCTATGAGGATTGGCTGCTTTCGGAGATCAGGCGTCTGCAGAGGCTTCAGCACCTGGCTGAGAAGTTCCAACAGAAGGCTTCCCTGCATGAAGCTTGGACCCGGG gggtgggacttagctatttgttttggatgcctcgctgtcccatcatcaagGACATAGCCAATGCTTGGCATGGGCTGAAGCAAGTGGAGAAGGGCTATGAGGATTGGCTGCTTTCAGAGATCAGGTGTCTGCAGAGGCTTCAGCTCTTGGCTGAAAAATTCCAACAAAAGGCTTCTCTGCATGAAGCTTGGACTCGAGgtgagttcaatacaatagcaagggtacataactaggatagatgataaaaa #### Actn3_ID701_9 --> 0 - 0 Original Alignment GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG ctttcttggtatagtgttgtgagagctatgtggacttcttgccctgctagGCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTGCCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAATATGCAAAACTGGCTAGCGAGgtaggtttagactacagtccaagaactccttcccagtgtttcttcagtgt Alignment from CESAR GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG ctttcttggtatagtgttgtgagagctatgtggacttcttgccctgctagGCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTGCCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAATATGCAAAACTGGCTAGCGAGgtaggtttagactacagtccaagaactccttcccagtgtttcttcagtgt Alignment from Spaln_aa2Genome GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG ctttcttggtatagtgttgtgagagctatgtggacttcttgccctgctagGCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTGCCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAATATGCAAAACTGGCTAGCGAGgtaggtttagactacagtccaagaactccttcccagtgtttcttcagtgt Alignment from Spaln_nt2Genome GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG ctttcttggtatagtgttgtgagagctatgtggacttcttgccctgctagGCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTGCCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAATATGCAAAACTGGCTAGCGAGgtaggtttagactacagtccaagaactccttcccagtgtttcttcagtgt Alignment from Pairagon GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG ctttcttggtatagtgttgtgagagctatgtggacttcttgccctgctagGCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTGCCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAATATGCAAAACTGGCTAGCGAGgtaggtttagactacagtccaagaactccttcccagtgtttcttcagtgt Alignment from Exonerate_protein2genome GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG ctttcttggtatagtgttgtgagagctatgtggacttcttgccctgctagGCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTGCCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAATATGCAAAACTGGCTAGCGAGgtaggtttagactacagtccaagaactccttcccagtgtttcttcagtgt Alignment from Exonerate_coding2genome GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG ctttcttggtatagtgttgtgagagctatgtggacttcttgccctgctagGCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTGCCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAATATGCAAAACTGGCTAGCGAGgtaggtttagactacagtccaagaactccttcccagtgtttcttcagtgt Alignment from GeneWise GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG ctttcttggtatagtgttgtgagagctatgtggacttcttgccctgctagGCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTGCCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAATATGCAAAACTGGCTAGCGAGgtaggtttagactacagtccaagaactccttcccagtgtttcttcagtgt #### Actr1a_ID9873_7 --> 0 - 0 Original Alignment AGAGCTTGCTACCTGTCCATAAACCCCCAGAAGGATGAGACACTGGAGACAGAGAAGGCTCAGTACTACCTGCCCGATGGCAGCACCATTGAG tgggctgttctgataaggtgtccatacataaatctactttttatttttagAGAGCTTGCTACCTATCCATAAACCCCCAGCAGGATGAGACACTAGAGACAGAGAAAGCTCAGCACTACCTGCCTGATGGTGGAACAATTGAAgtaaccgatcatatatgaatagccattggctattaacccagcagaaatta Alignment from CESAR AGAGCTTGCTACCTGTCCATAAACCCCCAGAAGGATGAGACACTGGAGACAGAGAAGGCTCAGTACTACCTGCCCGATGGCAGCACCATTGAG tgggctgttctgataaggtgtccatacataaatctactttttatttttagAGAGCTTGCTACCTATCCATAAACCCCCAGCAGGATGAGACACTAGAGACAGAGAAAGCTCAGCACTACCTGCCTGATGGTGGAACAATTGAAgtaaccgatcatatatgaatagccattggctattaacccagcagaaatta Alignment from Spaln_aa2Genome AGAGCTTGCTACCTGTCCATAAACCCCCAGAAGGATGAGACACTGGAGACAGAGAAGGCTCAGTACTACCTGCCCGATGGCAGCACCATTGAG tgggctgttctgataaggtgtccatacataaatctactttttatttttagAGAGCTTGCTACCTATCCATAAACCCCCAGCAGGATGAGACACTAGAGACAGAGAAAGCTCAGCACTACCTGCCTGATGGTGGAACAATTGAAgtaaccgatcatatatgaatagccattggctattaacccagcagaaatta Alignment from Spaln_nt2Genome AGAGCTTGCTACCTGTCCATAAACCCCCAGAAGGATGAGACACTGGAGACAGAGAAGGCTCAGTACTACCTGCCCGATGGCAGCACCATTGAG tgggctgttctgataaggtgtccatacataaatctactttttatttttagAGAGCTTGCTACCTATCCATAAACCCCCAGCAGGATGAGACACTAGAGACAGAGAAAGCTCAGCACTACCTGCCTGATGGTGGAACAATTGAAgtaaccgatcatatatgaatagccattggctattaacccagcagaaatta Alignment from Pairagon AGAGCTTGCTACCTGTCCATAAACCCCCAGAAGGATGAGACACTGGAGACAGAGAAGGCTCAGTACTACCTGCCCGATGGCAGCACCATTGAG tgggctgttctgataaggtgtccatacataaatctactttttatttttagAGAGCTTGCTACCTATCCATAAACCCCCAGCAGGATGAGACACTAGAGACAGAGAAAGCTCAGCACTACCTGCCTGATGGTGGAACAATTGAAgtaaccgatcatatatgaatagccattggctattaacccagcagaaatta Alignment from Exonerate_protein2genome AGAGCTTGCTACCTGTCCATAAACCCCCAGAAGGATGAGACACTGGAGACAGAGAAGGCTCAGTACTACCTGCCCGATGGCAGCACCATTGAG tgggctgttctgataaggtgtccatacataaatctactttttatttttagAGAGCTTGCTACCTATCCATAAACCCCCAGCAGGATGAGACACTAGAGACAGAGAAAGCTCAGCACTACCTGCCTGATGGTGGAACAATTGAAgtaaccgatcatatatgaatagccattggctattaacccagcagaaatta Alignment from Exonerate_coding2genome AGAGCTTGCTACCTGTCCATAAACCCCCAGAAGGATGAGACACTGGAGACAGAGAAGGCTCAGTACTACCTGCCCGATGGCAGCACCATTGAG tgggctgttctgataaggtgtccatacataaatctactttttatttttagAGAGCTTGCTACCTATCCATAAACCCCCAGCAGGATGAGACACTAGAGACAGAGAAAGCTCAGCACTACCTGCCTGATGGTGGAACAATTGAAgtaaccgatcatatatgaatagccattggctattaacccagcagaaatta Alignment from GeneWise AGAGCTTGCTACCTGTCCATAAACCCCCAGAAGGATGAGACACTGGAGACAGAGAAGGCTCAGTACTACCTGCCCGATGGCAGCACCATTGAG tgggctgttctgataaggtgtccatacataaatctactttttatttttagAGAGCTTGCTACCTATCCATAAACCCCCAGCAGGATGAGACACTAGAGACAGAGAAAGCTCAGCACTACCTGCCTGATGGTGGAACAATTGAAgtaaccgatcatatatgaatagccattggctattaacccagcagaaatta #### Actr1a_ID9877_3 --> 1 - 0 Original Alignment tGTGGGCAGACCCAAACATGTTCGTGTCATGGCAGGAGCCCTGGAAGGTGACATCTTCATTGGCCCCAAAGCGGAG tgatgttctactacacaatatgaagattcttccccaattgctgagcacagtGTAGGAAGGCCCAAACATGTTCATGCAATGGCAGGGGCCCTTGAAGGTGACCTCTTCATTGGCTCCAAAGCAGAGgtcagtcctgtcctacaagaaaaggttggaatgttgatgcggtgaacaca Alignment from CESAR tGTGGGCAGACCCAAACATGTTCGTGTCATGGCAGGAGCCCTGGAAGGTGACATCTTCATTGGCCCCAAAGCGGAG tgatgttctactacacaatatgaagattcttccccaattgctgagcacagtGTAGGAAGGCCCAAACATGTTCATGCAATGGCAGGGGCCCTTGAAGGTGACCTCTTCATTGGCTCCAAAGCAGAGgtcagtcctgtcctacaagaaaaggttggaatgttgatgcggtgaacaca Alignment from Spaln_aa2Genome TGTGGGCAGACCCAAACATGTTCGTGTCATGGCAGGAGCCCTGGAAGGTGACATCTTCATTGGCCCCAAAGCGGAG tgatgttctactacacaatatgaagattcttccccaattgctgagcacagTGTAGGAAGGCCCAAACATGTTCATGCAATGGCAGGGGCCCTTGAAGGTGACCTCTTCATTGGCTCCAAAGCAGAGgtcagtcctgtcctacaagaaaaggttggaatgttgatgcggtgaacaca Alignment from Spaln_nt2Genome TGTGGGCAGACCCAAACATGTTCGTGTCATGGCAGGAGCCCTGGAAGGTGACATCTTCATTGGCCCCAAAGCGGAG tgatgttctactacacaatatgaagattcttccccaattgctgagcacagTGTAGGAAGGCCCAAACATGTTCATGCAATGGCAGGGGCCCTTGAAGGTGACCTCTTCATTGGCTCCAAAGCAGAGgtcagtcctgtcctacaagaaaaggttggaatgttgatgcggtgaacaca Alignment from Pairagon TGTGGGCAGACCCAAACATGTTCGTGTCATGGCAGGAGCCCTGGAAGGTGACATCTTCATTGGCCCCAAAGCGGAG tgatgttctactacacaatatgaagattcttccccaattgctgagcacagTGTAGGAAGGCCCAAACATGTTCATGCAATGGCAGGGGCCCTTGAAGGTGACCTCTTCATTGGCTCCAAAGCAGAGgtcagtcctgtcctacaagaaaaggttggaatgttgatgcggtgaacaca Alignment from Exonerate_protein2genome TGTGGGCAGACCCAAACATGTTCGTGTCATGGCAGGAGCCCTGGAAGGTGACATCTTCATTGGCCCCAAAGCGGAG tgatgttctactacacaatatgaagattcttccccaattgctgagcacagTGTAGGAAGGCCCAAACATGTTCATGCAATGGCAGGGGCCCTTGAAGGTGACCTCTTCATTGGCTCCAAAGCAGAGgtcagtcctgtcctacaagaaaaggttggaatgttgatgcggtgaacaca Alignment from Exonerate_coding2genome TGTGGGCAGACCCAAACATGTTCGTGTCATGGCAGGAGCCCTGGAAGGTGACATCTTCATTGGCCCCAAAGCGGAG tgatgttctactacacaatatgaagattcttccccaattgctgagcacagTGTAGGAAGGCCCAAACATGTTCATGCAATGGCAGGGGCCCTTGAAGGTGACCTCTTCATTGGCTCCAAAGCAGAGgtcagtcctgtcctacaagaaaaggttggaatgttgatgcggtgaacaca Alignment from GeneWise TGTGGGCAGACCCAAACATGTTCGTGTCATGGCAGGAGCCCTGGAAGGTGACATCTTCATTGGCCCCAAAGCGGAG tgatgttctactacacaatatgaagattcttccccaattgctgagcacagTGTAGGAAGGCCCAAACATGTTCATGCAATGGCAGGGGCCCTTGAAGGTGACCTCTTCATTGGCTCCAAAGCAGAGgtcagtcctgtcctacaagaaaaggttggaatgttgatgcggtgaacaca #### Actr1a_ID9878_2 --> 0 - 2 Original Alignment GGATCCGGTGTGATTAAAGCTGGCTTTGCTGGTGATCAGATCCCCAAATACTGCTTTCCAAACta gtgatttgaacaactggacagtctctgacagcctcctcttcatctcctagGGATCAGGTGTGATAAAATCTGGCTTTGCTGGTGACCAGATCCCCAAATACTGCTTTCCAAACtagtaagatggttgtaggtagagctagcacattcaccatccaaaaatcaata Alignment from CESAR GGATCCGGTGTGATTAAAGCTGGCTTTGCTGGTGATCAGATCCCCAAATACTGCTTTCCAAACta gtgatttgaacaactggacagtctctgacagcctcctcttcatctcctagGGATCAGGTGTGATAAAATCTGGCTTTGCTGGTGACCAGATCCCCAAATACTGCTTTCCAAACtagtaagatggttgtaggtagagctagcacattcaccatccaaaaatcaata Alignment from Spaln_aa2Genome GGATCCGGTGTGATTAAAGCTGGCTTTGCTGGTGATCAGATCCCCAAATACTGCTTTCCAAACTA gtgatttgaacaactggacagtctctgacagcctcctcttcatctcctagGGATCAGGTGTGATAAAATCTGGCTTTGCTGGTGACCAGATCCCCAAATACTGCTTTCCAAACTAgtaagatggttgtaggtagagctagcacattcaccatccaaaaatcaata Alignment from Spaln_nt2Genome GGATCCGGTGTGATTAAAGCTGGCTTTGCTGGTGATCAGATCCCCAAATACTGCTTTCCAAACTA gtgatttgaacaactggacagtctctgacagcctcctcttcatctcctagGGATCAGGTGTGATAAAATCTGGCTTTGCTGGTGACCAGATCCCCAAATACTGCTTTCCAAACTAgtaagatggttgtaggtagagctagcacattcaccatccaaaaatcaata Alignment from Pairagon GGATCCGGTGTGATTAAAGCTGGCTTTGCTGGTGATCAGATCCCCAAATACTGCTTTCCAAACTA gtgatttgaacaactggacagtctctgacagcctcctcttcatctcctagGGATCAGGTGTGATAAAATCTGGCTTTGCTGGTGACCAGATCCCCAAATACTGCTTTCCAAACTAgtaagatggttgtaggtagagctagcacattcaccatccaaaaatcaata Alignment from Exonerate_protein2genome GGATCCGGTGTGATTAAAGCTGGCTTTGCTGGTGATCAGATCCCCAAATACTGCTTTCCAAACTA gtgatttgaacaactggacagtctctgacagcctcctcttcatctcctagGGATCAGGTGTGATAAAATCTGGCTTTGCTGGTGACCAGATCCCCAAATACTGCTTTCCAAACTAgtaagatggttgtaggtagagctagcacattcaccatccaaaaatcaata Alignment from Exonerate_coding2genome GTGATCGCCAACCAGCCTGTTGTGATCGACAACGGATCCGGTGTGATTAAAGCTGGCTTTGCTGGTGATCAGATCCCCAAATACTGCTTTCCAAACTA gtgatttgaacaactggACAGTCTCTGACAGCCTCCTCTTCATCTCCTAGGGATCAGGTGTGATAAAATCTGGCTTTGCTGGTGACCAGATCCCCAAATACTGCTTTCCAAACTAgtaagatggttgtaggtagagctagcacattcaccatccaaaaatcaata Alignment from GeneWise GGATCCGGTGTGATTAAAGCTGGCTTTGCTGGTGATCAGATCCCCAAATACTGCTTTCCAAACTA gtgatttgaacaactggacagtctctgacagcctcctcttcatctcctagGGATCAGGTGTGATAAAATCTGGCTTTGCTGGTGACCAGATCCCCAAATACTGCTTTCCAAACTAgtaagatggttgtaggtagagctagcacattcaccatccaaaaatcaata #### Add3_ID11212_4 --> 0 - 0 Original Alignment GTACGAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTCTCTTTTTCTGAAGCGACAGCCTCCACTTTG tgatattgaggcagaagtgggtacttggcatctccattgtctgcctgcagGTCCGAATCAGTAAGGAACAAGATCACATTATAATGATTCCT---GGACTGTCTTTTTCTGAGACAACAGCGTCCTCTTCAgtaagtttatcattcccatgtaactaatctttaatactctcaataggcag Alignment from CESAR GTACGAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTCTCTTTTTCTGAAGCGACAGCCTCCACTTTG tgatattgaggcagaagtgggtacttggcatctccattgtctgcctgcagGTCCGAATCAGTAAGGAACAAGATCACATTATAATGATTCCT---GGACTGTCTTTTTCTGAGACAACAGCGTCCTCTTCAgtaagtttatcattcccatgtaactaatctttaatactctcaataggcag Alignment from Spaln_aa2Genome GTACGAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTCTCTTTTTCTGAAGCGACAGCCTCCACTTTG tgatattgaggcagaagtgggtacttggcatctccattgtctgcctgcagGTCCGAATCAGTAAGGAACAAGATCACATTATAATGATTCCT---GGACTGTCTTTTTCTGAGACAACAGCGTCCTCTTCAgtaagtttatcattcccatgtaactaatctttaatactctcaataggcag Alignment from Spaln_nt2Genome GTACGAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTCTCTTTTTCTGAAGCGACAGCCTCCACTTTG tgatattgaggcagaagtgggtacttggcatctccattgtctgcctgcagGTCCGAATCAGTAAGGAACAAGATCACATTATAATGATTCC---TGGACTGTCTTTTTCTGAGACAACAGCGTCCTCTTCAgtaagtttatcattcccatgtaactaatctttaatactctcaataggcag Alignment from Pairagon GTACGAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTCTCTTTTTCTGAAGCGACAGCCTCCACTTTG tgatattgaggcagaagtgggtacttggcatctccattgtctgcctgcagGTCCGAATCAGTAAGGAACAAGATCACATTATAATGATTCCTGGA---CTGTCTTTTTCTGAGACAACAGCGTCCTCTTCAgtaagtttatcattcccatgtaactaatctttaatactctcaataggcag Alignment from Exonerate_protein2genome GTACGAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTCTCTTTTTCTGAAGCGACAGCCTCCACTTTG tgatattgaggcagaagtgggtacttggcatctccattgtctgcctgcagGTCCGAATCAGTAAGGAACAAGATCACATTATAATGATTCCT---GGACTGTCTTTTTCTGAGACAACAGCGTCCTCTTCAgtaagtttatcattcccatgtaactaatctttaatactctcaataggcag Alignment from Exonerate_coding2genome GTACGAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTCTCTTTTTCTGAAGCGACAGCCTCCACTTTG tgatattgaggcagaagtgggtacttggcatctccattgtctgcctgcagGTCCGAATCAGTAAGGAACAAGATCACATTATAATGATTCCT---GGACTGTCTTTTTCTGAGACAACAGCGTCCTCTTCAgtaagtttatcattcccatgtaactaatctttaatactctcaataggcag Alignment from GeneWise GTACGAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTCTCTTTTTCTGAAGCGACAGCCTCCACTTTG tgatattgaggcagaagtgggtacttggcatctccattgtctgcctgcagGTCCGAATCAGTAAGGAACAAGATCACATTATAATGATTCCT---GGACTGTCTTTTTCTGAGACAACAGCGTCCTCTTCAgtaagtttatcattcccatgtaactaatctttaatactctcaataggcag #### Add3_ID11213_5 --> 0 - 0 Original Alignment GTGAAAGTCAACATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCGCATGCTGCCATCTATTCAACACGCCCCGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCG aaacctgtattgtgttagaaaatgtaaacgtccctcctcctctgttccagGTAAAAGTGAATATAATTGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAGATTGACCACACGGGCTTCAGCCCACATGCTGCCATCTATTCAATGCGCCCTGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCAgtagggaagccacatatgcctgtctagatttccaatactctgggagcttc Alignment from CESAR GTGAAAGTCAACATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCGCATGCTGCCATCTATTCAACACGCCCCGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCG aaacctgtattgtgttagaaaatgtaaacgtccctcctcctctgttccagGTAAAAGTGAATATAATTGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAGATTGACCACACGGGCTTCAGCCCACATGCTGCCATCTATTCAATGCGCCCTGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCAgtagggaagccacatatgcctgtctagatttccaatactctgggagcttc Alignment from Spaln_aa2Genome GTGAAAGTCAACATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCGCATGCTGCCATCTATTCAACACGCCCCGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCG aaacctgtattgtgttagaaaatgtaaacgtccctcctcctctgttccagGTAAAAGTGAATATAATTGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAGATTGACCACACGGGCTTCAGCCCACATGCTGCCATCTATTCAATGCGCCCTGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCAgtagggaagccacatatgcctgtctagatttccaatactctgggagcttc Alignment from Spaln_nt2Genome GTGAAAGTCAACATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCGCATGCTGCCATCTATTCAACACGCCCCGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCG aaacctgtattgtgttagaaaatgtaaacgtccctcctcctctgttccagGTAAAAGTGAATATAATTGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAGATTGACCACACGGGCTTCAGCCCACATGCTGCCATCTATTCAATGCGCCCTGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCAgtagggaagccacatatgcctgtctagatttccaatactctgggagcttc Alignment from Pairagon GTGAAAGTCAACATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCGCATGCTGCCATCTATTCAACACGCCCCGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCG aaacctgtattgtgttagaaaatgtaaacgtccctcctcctctgttccagGTAAAAGTGAATATAATTGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAGATTGACCACACGGGCTTCAGCCCACATGCTGCCATCTATTCAATGCGCCCTGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCAgtagggaagccacatatgcctgtctagatttccaatactctgggagcttc Alignment from Exonerate_protein2genome GTGAAAGTCAACATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCGCATGCTGCCATCTATTCAACACGCCCCGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCG aaacctgtattgtgttagaaaatgtaaacgtccctcctcctctgttccagGTAAAAGTGAATATAATTGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAGATTGACCACACGGGCTTCAGCCCACATGCTGCCATCTATTCAATGCGCCCTGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCAgtagggaagccacatatgcctgtctagatttccaatactctgggagcttc Alignment from Exonerate_coding2genome GTGAAAGTCAACATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCGCATGCTGCCATCTATTCAACACGCCCCGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCG aaacctgtattgtgttagaaaatgtaaacgtccctcctcctctgttccagGTAAAAGTGAATATAATTGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAGATTGACCACACGGGCTTCAGCCCACATGCTGCCATCTATTCAATGCGCCCTGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCAgtagggaagccacatatgcctgtctagatttccaatactctgggagcttc Alignment from GeneWise GTGAAAGTCAACATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCGCATGCTGCCATCTATTCAACACGCCCCGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCG aaacctgtattgtgttagaaaatgtaaacgtccctcctcctctgttccagGTAAAAGTGAATATAATTGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAGATTGACCACACGGGCTTCAGCCCACATGCTGCCATCTATTCAATGCGCCCTGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCAgtagggaagccacatatgcctgtctagatttccaatactctgggagcttc #### Add3_ID11214_6 --> 0 - 0 Original Alignment GTGTCCTCCATGAAGTGTGGGATCCTTCCAATTTCCCAAGAGTCTCTCATCCTGGGAGATGTCGCCTACTATGACTACCAGGGGTCGCTTGATGAGGAGGAAGAAAGAATTGAACTTCAGAAAGTGCTGGGTCCAAGCTGTAAG agaagaactggatgtgctggactgtgtactgcctactgctcctacctcagGTGTCATCAATGAAATGTGGGATCCTTCTAATCTCACAAGAGTCTATTATCTTAGGAGATGTTGCCTATTACGCATATCAGGAATCACTTGATGAAGATGAAGAAAGAATTGAACTTCAGAAAGTTCTGGGCTCAGGTTGTGAGgtgaggtcttatctctagggtgtattccatgttgccattgtttgcttggg Alignment from CESAR GTGTCCTCCATGAAGTGTGGGATCCTTCCAATTTCCCAAGAGTCTCTCATCCTGGGAGATGTCGCCTACTATGACTACCAGGGGTCGCTTGATGAGGAGGAAGAAAGAATTGAACTTCAGAAAGTGCTGGGTCCAAGCTGTAAG agaagaactggatgtgctggactgtgtactgcctactgctcctacctcagGTGTCATCAATGAAATGTGGGATCCTTCTAATCTCACAAGAGTCTATTATCTTAGGAGATGTTGCCTATTACGCATATCAGGAATCACTTGATGAAGATGAAGAAAGAATTGAACTTCAGAAAGTTCTGGGCTCAGGTTGTGAGgtgaggtcttatctctagggtgtattccatgttgccattgtttgcttggg Alignment from Spaln_aa2Genome GTGTCCTCCATGAAGTGTGGGATCCTTCCAATTTCCCAAGAGTCTCTCATCCTGGGAGATGTCGCCTACTATGACTACCAGGGGTCGCTTGATGAGGAGGAAGAAAGAATTGAACTTCAGAAAGTGCTGGGTCCAAGCTGTAAG agaagaactggatgtgctggactgtgtactgcctactgctcctacctcagGTGTCATCAATGAAATGTGGGATCCTTCTAATCTCACAAGAGTCTATTATCTTAGGAGATGTTGCCTATTACGCATATCAGGAATCACTTGATGAAGATGAAGAAAGAATTGAACTTCAGAAAGTTCTGGGCTCAGGTTGTGAGgtgaggtcttatctctagggtgtattccatgttgccattgtttgcttggg Alignment from Spaln_nt2Genome GTGTCCTCCATGAAGTGTGGGATCCTTCCAATTTCCCAAGAGTCTCTCATCCTGGGAGATGTCGCCTACTATGACTACCAGGGGTCGCTTGATGAGGAGGAAGAAAGAATTGAACTTCAGAAAGTGCTGGGTCCAAGCTGTAAG agaagaactggatgtgctggactgtgtactgcctactgctcctacctcagGTGTCATCAATGAAATGTGGGATCCTTCTAATCTCACAAGAGTCTATTATCTTAGGAGATGTTGCCTATTACGCATATCAGGAATCACTTGATGAAGATGAAGAAAGAATTGAACTTCAGAAAGTTCTGGGCTCAGGTTGTGAGgtgaggtcttatctctagggtgtattccatgttgccattgtttgcttggg Alignment from Pairagon GTGTCCTCCATGAAGTGTGGGATCCTTCCAATTTCCCAAGAGTCTCTCATCCTGGGAGATGTCGCCTACTATGACTACCAGGGGTCGCTTGATGAGGAGGAAGAAAGAATTGAACTTCAGAAAGTGCTGGGTCCAAGCTGTAAG agaagaactggatgtgctggactgtgtactgcctactgctcctacctcagGTGTCATCAATGAAATGTGGGATCCTTCTAATCTCACAAGAGTCTATTATCTTAGGAGATGTTGCCTATTACGCATATCAGGAATCACTTGATGAAGATGAAGAAAGAATTGAACTTCAGAAAGTTCTGGGCTCAGGTTGTGAGgtgaggtcttatctctagggtgtattccatgttgccattgtttgcttggg Alignment from Exonerate_protein2genome GTGTCCTCCATGAAGTGTGGGATCCTTCCAATTTCCCAAGAGTCTCTCATCCTGGGAGATGTCGCCTACTATGACTACCAGGGGTCGCTTGATGAGGAGGAAGAAAGAATTGAACTTCAGAAAGTGCTGGGTCCAAGCTGTAAG agaagaactggatgtgctggactgtgtactgcctactgctcctacctcagGTGTCATCAATGAAATGTGGGATCCTTCTAATCTCACAAGAGTCTATTATCTTAGGAGATGTTGCCTATTACGCATATCAGGAATCACTTGATGAAGATGAAGAAAGAATTGAACTTCAGAAAGTTCTGGGCTCAGGTTGTGAGgtgaggtcttatctctagggtgtattccatgttgccattgtttgcttggg Alignment from Exonerate_coding2genome GTGTCCTCCATGAAGTGTGGGATCCTTCCAATTTCCCAAGAGTCTCTCATCCTGGGAGATGTCGCCTACTATGACTACCAGGGGTCGCTTGATGAGGAGGAAGAAAGAATTGAACTTCAGAAAGTGCTGGGTCCAAGCTGTAAG agaagaactggatgtgctggactgtgtactgcctactgctcctacctcagGTGTCATCAATGAAATGTGGGATCCTTCTAATCTCACAAGAGTCTATTATCTTAGGAGATGTTGCCTATTACGCATATCAGGAATCACTTGATGAAGATGAAGAAAGAATTGAACTTCAGAAAGTTCTGGGCTCAGGTTGTGAGgtgaggtcttatctctagggtgtattccatgttgccattgtttgcttggg Alignment from GeneWise GTGTCCTCCATGAAGTGTGGGATCCTTCCAATTTCCCAAGAGTCTCTCATCCTGGGAGATGTCGCCTACTATGACTACCAGGGGTCGCTTGATGAGGAGGAAGAAAGAATTGAACTTCAGAAAGTGCTGGGTCCAAGCTGTAAG agaagaactggatgtgctggactgtgtactgcctactgctcctacctcagGTGTCATCAATGAAATGTGGGATCCTTCTAATCTCACAAGAGTCTATTATCTTAGGAGATGTTGCCTATTACGCATATCAGGAATCACTTGATGAAGATGAAGAAAGAATTGAACTTCAGAAAGTTCTGGGCTCAGGTTGTGAGgtgaggtcttatctctagggtgtattccatgttgccattgtttgcttggg #### Adrbk1_ID476_19 --> 0 - 0 Original Alignment CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT gtgattatctgggtgcatattaatcccatggtatttactttttgttttagCAAAGCCTT------ATGGAGGAAATTCAGTCTGTTGAAGGGGCAGAGCTCAAGGAACATAAATGTCTACTGCTT---------------AAGCAATTTGTACTGCGGTGTGATgtaagcaaaacaaagggttgagtggcaggtggtgatgtttgaaggtacat Alignment from CESAR CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT gtgattatctgggtgcatattaatcccatggtatttactttttgttttagCAAAGCCTT------ATGGAGGAAATTCAGTCTGTTGAAGGGGCAGAGCTCAAGGAACATAAATGTCTACTGCTT---------------AAGCAATTTGTACTGCGGTGTGATgtaagcaaaacaaagggttgagtggcaggtggtgatgtttgaaggtacat Alignment from Spaln_aa2Genome CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT gtgattatctgggtgcatattaatcccatggtatttactttttgttttagCAAAGCCTT------ATGGAGGAAATTCAGTCTGTTGAAGGGGCAGAGCTCAAGGAACATAAATGTCTACTGCTT---------------AAGCAATTTGTACTGCGGTGTGATgtaagcaaaacaaagggttgagtggcaggtggtgatgtttgaaggtacat Alignment from Spaln_nt2Genome CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT gtgattatctgggtgcatattaatcccatggtatttactttttgttttagCAAAGCCT------TATGGAGGAAATTCAGTCTGTTGAAGGGGCAGAGCTCAAGGAACATAAATGTCTACTGCTT---------------AAGCAATTTGTACTGCGGTGTGATgtaagcaaaacaaagggttgagtggcaggtggtgatgtttgaaggtacat Alignment from Pairagon CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT gtgattatctgggtgcatattaatcccatggtatttactttttgttttagCAAAGCCT------TATGGAGGAAATTCAGTCTGTTGAAGGGGCAGAGCTCAAGGAACATAAATGTCTACTGCTT---------------AAGCAATTTGTACTGCGGTGTGATgtaagcaaaacaaagggttgagtggcaggtggtgatgtttgaaggtacat Alignment from Exonerate_protein2genome CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT gtgattatctgggtgcatattaatcccatggtatttactttttgttttagCAAAGCCTT------ATGGAGGAAATTCAGTCTGTTGAAGGGGCAGAGCTCAAGGAACATAAATGTCTACTGCTT---------------AAGCAATTTGTACTGCGGTGTGATgtaagcaaaacaaagggttgagtggcaggtggtgatgtttgaaggtacat Alignment from Exonerate_coding2genome gtgattatctgggtgcatattaatcccatggtatttactttttgttttagcaaagccttatggaggaaattcagtctgttgaaggggcagagctcaaggaacataaatgtctactgcttaagcaatttgtactgcggtgtgatgtaagcaaaacaaagggttgagtggcaggtggtgatgtttgaaggtacat Alignment from GeneWise CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT gtgattatctgggtgcatattaatcccatggtatttactttttgttttagCAAAGCCTT------ATGGAGGAAATTCAGTCTGTTGAAGGGGCAGAGCTCAAGGAACATAAATGTCTACTGCTTAAG---------------CAATTTGTACTGCGGTGTGATgtaagcaaaacaaagggttgagtggcaggtggtgatgtttgaaggtacat #### Adrbk1_ID479_16 --> 0 - 0 Original Alignment TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tgccccctgccactctctactgcaatgatctcttctgtccccattaccagTATCCTCCCCCATTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaagcaacccatgtagctcaggaccctgtttctggactctgaaactgaa Alignment from CESAR TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tgccccctgccactctctactgcaatgatctcttctgtccccattaccagTATCCTCCCCCATTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaagcaacccatgtagctcaggaccctgtttctggactctgaaactgaa Alignment from Spaln_aa2Genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tgccccctgccactctctactgcaatgatctcttctgtccccattaccagTATCCTCCCCCATTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaagcaacccatgtagctcaggaccctgtttctggactctgaaactgaa Alignment from Spaln_nt2Genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tgccccctgccactctctactgcaatgatctcttctgtccccattaccagTATCCTCCCCCATTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaagcaacccatgtagctcaggaccctgtttctggactctgaaactgaa Alignment from Pairagon TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tgccccctgccactctctactgcaatgatctcttctgtccccattaccagTATCCTCCCCCATTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaagcaacccatgtagctcaggaccctgtttctggactctgaaactgaa Alignment from Exonerate_protein2genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tgccccctgccactctctactgcaatgatctcttctgtccccattaccagTATCCTCCCCCATTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaagcaacccatgtagctcaggaccctgtttctggactctgaaactgaa Alignment from Exonerate_coding2genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tgccccctgccactctctactgcaatgatctcttctgtccccattaccagTATCCTCCCCCATTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaagcaacccatgtagctcaggaccctgtttctggactctgaaactgaa Alignment from GeneWise TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tgccccctgccactctctactgcaatgatctcttctgtccccattaccagTATCCTCCCCCATTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaagcaacccatgtagctcaggaccctgtttctggactctgaaactgaa #### Adrbk1_ID486_9 --> 0 - 1 Original Alignment GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACg gtGGGGAC tcccacttagtttgccttctacaagtcaattctgcattcactattttaagGACTGTTCCTTCACCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCTGGATCTTATGAATggtgtgtaagtctagagactgttttatttatatacaattctaggtGCAGAA Alignment from CESAR GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACg gtGGGGAC tcccacttagtttgccttctacaagtcaattctgcattcactattttaagGACTGTTCCTTCACCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCTGGATCTTATGAATggtgtgtaagtctagagactgttgccttctgtttccttcttaggtGCAGAA Alignment from Spaln_aa2Genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC tcccacttagtttgccttctacaagtcaattctgcattcactattttaagGACTGTTCCTTCACCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCTGGATCTTATGAATGgtgtgtaagtctagagactgttttatttatatacaattctagGTGCAGAA Alignment from Spaln_nt2Genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC tcccacttagtttgccttctacaagtcaattctgcattcactattttaagGACTGTTCCTTCACCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCTGGATCTTATGAATGgtgtgtaagtctagagactgttttatttatatacaattctagGTGCAGAA Alignment from Pairagon GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC tcccacttagtttgccttctacaagtcaattctgcattcactattttaagGACTGTTCCTTCACCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCTGGATCTTATGAATGgtgtgtaagtctagagactgttttatttatatacaattctagGTGCAGAA Alignment from Exonerate_protein2genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC tcccacttagtttgccttctacaagtcaattctgcattcactattttaagGACTGTTCCTTCACCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCTGGATCTTATGAATGgtgtgtaagtctagagactgttttatttatatacaattctagGTGCAGAA Alignment from Exonerate_coding2genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC tcccacttagtttgccttctacaagtcaattctgcattcactattttaagGACTGTTCCTTCACCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCTGGATCTTATGAATGgtgtgtaagtctagagactgttttatttatatacaattctagGTGCAGAA Alignment from GeneWise GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC tcccacttagtttgccttctacaagtcaattctgcattcactattttaagGACTGTTCCTTCACCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCTGGATCTTATGAATGgtgtgtaagtctagagactgttttatttatatacaattctagGTGCAGAA #### Adrbk1_ID488_7 --> 0 - 2 Original Alignment CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGat agcacaccagcaacactataagagtagtactttggctcacccacatccag---CCCATGAATGATTTTAGTGTACGTCAGATTATTGGACATGGTGGCTTTGGTGAGGTATATGGTTGCCGCCAGGCTGATGTAGGCAAGatgtactctgtagacaagtagaggtggtcatcaaagggcatctctgagccaa Alignment from CESAR CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGat agcacaccagcaacactataagagtagtactttggctcacccacatccag---CCCATGAATGATTTTAGTGTACGTCAGATTATTGGACATGGTGGCTTTGGTGAGGTATATGGTTGCCGCCAGGCTGATGTAGGCAAGatgtactctgtagacaagtagaggtggtcatcaaagggcatctctgagccaa Alignment from Spaln_aa2Genome CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT agcacaccagcaacactataagagtagtactttggctcacccacatccagCCCATGAATGATTTT---AGTGTACGTCAGATTATTGGACATGGTGGCTTTGGTGAGGTATATGGTTGCCGCCAGGCTGATGTAGGCAAGATgtactctgtagacaagtagaggtggtcatcaaagggcatctctgagccaa Alignment from Spaln_nt2Genome CCATGAAT-GACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT agcacaccagcaacactataagagtagtactttggctcacccacatccagCCCATGAATGATTTTAGTGTACGTCAGATTATTGGACATGGTGGCTTTGGTGAGGTATATGGTTGCCGCCAGGCTGATGTAGGCAAGATgtactctgtagacaagtagaggtggtcatcaaagggcatctctgagccaa Alignment from Pairagon CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT agcacaccagcaacactataagagtagtactttggctcacccacatccagC---CCATGAATGATTTTAGTGTACGTCAGATTATTGGACATGGTGGCTTTGGTGAGGTATATGGTTGCCGCCAGGCTGATGTAGGCAAGATgtactctgtagacaagtagaggtggtcatcaaagggcatctctgagccaa Alignment from Exonerate_protein2genome ACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT agcacaccagcaacactataagagtagtactttggctcacccacatccagCCCATGAATGATTTTAGTGTACGTCAGATTATTGGACATGGTGGCTTTGGTGAGGTATATGGTTGCCGCCAGGCTGATGTAGGCAAGATgtactctgtagacaagtagaggtggtcatcaaagggcatctctgagccaa Alignment from Exonerate_coding2genome ACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCACCTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT AGCACACCAGCAACACTATAAGAGTAGTACTTTGGCTCACCCACATCCAG---CCCATGAATGATTTTAGTGTACGTCAGATTATTGGACATGGTGGCTTTGGTGAGGTATATGGTTGCCGCCAGGCTGATGTAGGCAAGATgtactctgtagacaagtagaggtggtcatcaaagggcatctctgagccaa Alignment from GeneWise CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGATGTACGCCATGAAG-- agcacaccagcaacactataagagtagtactttggctcacccacatccagCCC---ATGAATGATTTTAGTGTACGTCAGATTATTGGACATGGTGGCTTTGGTGAGGTATATGGTTGCCGCCAGGCTGATGTAGGCAAGATGTACTCTGTAGACAAgtagaggtggtcatcaaagggcatctctgagccaa #### Adrbk1_ID489_6 --> 1 - 0 Original Alignment tGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC attcaacagtccggcacgcctagtagtggactgcttctctgcccctccagtGATCAGTTCACACATTTCTGTCAATGGAAGAACATTGAGCTTAACATTCATgttgagagcagtactgcatgaatgcgactctacgtgtaatatgggtgggc Alignment from CESAR tGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC attcaacagtccggcacgcctagtagtggactgcttctctgcccctccagtGATCAGTTCACACATTTCTGTCAATGGAAGAACATTGAGCTTAACATTCATgttgagagcagtactgcatgaatgcgactctacgtgtaatatgggtgggc Alignment from Spaln_aa2Genome TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC attcaacagtccggcacgcctagtagtggactgcttctctgcccctccagTGATCAGTTCACACATTTCTGTCAATGGAAGAACATTGAGCTTAACATTCATgttgagagcagtactgcatgaatgcgactctacgtgtaatatgggtgggc Alignment from Spaln_nt2Genome TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC attcaacagtccggcacgcctagtagtggactgcttctctgcccctccagTGATCAGTTCACACATTTCTGTCAATGGAAGAACATTGAGCTTAACATTCATgttgagagcagtactgcatgaatgcgactctacgtgtaatatgggtgggc Alignment from Pairagon TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC attcaacagtccggcacgcctagtagtggactgcttctctgcccctccagTGATCAGTTCACACATTTCTGTCAATGGAAGAACATTGAGCTTAACATTCATgttgagagcagtactgcatgaatgcgactctacgtgtaatatgggtgggc Alignment from Exonerate_protein2genome TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCACCTG attcaacagtccggcacgcctagtagtggactgcttctctgcccctccagTGATCAGTTCACACATTTCTGTCAATGGAAGAACATTGAGCTTAACATTCATGTTgagagcagtactgcatgaatgcgactctacgtgtaatatgggtgggc Alignment from Exonerate_coding2genome attcaacagtccggcacgcctagtagtggactgcttctctgcccctccagtgatcagttcacacatttctgtcaatggaagaacattgagcttaacattcatgttgagagcagtactgcatgaatgcgactctacgtgtaatatgggtgggc Alignment from GeneWise TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC attcaacagtccggcacgcctagtagtggactgcttctctgcccctccagTGATCAGTTCACACATTTCTGTCAATGGAAGAACATTGAGCTTAACATTCATgttgagagcagtactgcatgaatgcgactctacgtgtaatatgggtgggc #### Adrbk1_ID491_4 --> 0 - 0 Original Alignment CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG ccattccattttgcttgttcatgttcatttatttatttatctttatgcagCCCTTCTCCCAAAATGCTGCAGAGCATGTGCAGGCCCACCTTGTGAAGAAGCAGGTCCCTCCAGATCTGTTTCAGgtaccattagggtgatcatcatggtattagacattggtaagatgttgctc Alignment from CESAR CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG ccattccattttgcttgttcatgttcatttatttatttatctttatgcagCCCTTCTCCCAAAATGCTGCAGAGCATGTGCAGGCCCACCTTGTGAAGAAGCAGGTCCCTCCAGATCTGTTTCAGgtaccattagggtgatcatcatggtattagacattggtaagatgttgctc Alignment from Spaln_aa2Genome CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG ccattccattttgcttgttcatgttcatttatttatttatctttatgcagCCCTTCTCCCAAAATGCTGCAGAGCATGTGCAGGCCCACCTTGTGAAGAAGCAGGTCCCTCCAGATCTGTTTCAGgtaccattagggtgatcatcatggtattagacattggtaagatgttgctc Alignment from Spaln_nt2Genome CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG ccattccattttgcttgttcatgttcatttatttatttatctttatgcagCCCTTCTCCCAAAATGCTGCAGAGCATGTGCAGGCCCACCTTGTGAAGAAGCAGGTCCCTCCAGATCTGTTTCAGgtaccattagggtgatcatcatggtattagacattggtaagatgttgctc Alignment from Pairagon CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG ccattccattttgcttgttcatgttcatttatttatttatctttatgcagCCCTTCTCCCAAAATGCTGCAGAGCATGTGCAGGCCCACCTTGTGAAGAAGCAGGTCCCTCCAGATCTGTTTCAGgtaccattagggtgatcatcatggtattagacattggtaagatgttgctc Alignment from Exonerate_protein2genome CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG ccattccattttgcttgttcatgttcatttatttatttatctttatgcagCCCTTCTCCCAAAATGCTGCAGAGCATGTGCAGGCCCACCTTGTGAAGAAGCAGGTCCCTCCAGATCTGTTTCAGgtaccattagggtgatcatcatggtattagacattggtaagatgttgctc Alignment from Exonerate_coding2genome ccattccattttgcttgttcatgttcatttatttatttatctttatgcagcccttctcccaaaatgctgcagagcatgtgcaggcccaccttgtgaagaagcaggtccctccagatctgtttcaggtaccattagggtgatcatcatggtattagacattggtaagatgttgctc Alignment from GeneWise CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG ccattccattttgcttgttcatgttcatttatttatttatctttatgcagCCCTTCTCCCAAAATGCTGCAGAGCATGTGCAGGCCCACCTTGTGAAGAAGCAGGTCCCTCCAGATCTGTTTCAGgtaccattagggtgatcatcatggtattagacattggtaagatgttgctc #### Afap1l2_ID12245_18 --> 2 - 0 Original Alignment atAAGGGGGTCCTGGCCAAGCTGGAGCAGACACTGAAGAAAATAGACGAGGAATGCCGGATGGAGGAGAGCAGGCGTGTGGACCTTGAGCTCAGCATCATGGAGGTGAAGGACAACCTGAAGAAGGCAGAGGCTGGGCCCGTGACCCTGGGCACCACTGTGGATACCACGCACCTGGACAACATGAGCCCTCGT tggattcccgaagaatacacttacccacttagctttcctgcctttttcagatAAGGGGGTCCTGGCCAAGTTGGAGCAGATATTGAAGAAAATAGATGAGGAATGCCAGATGGGGGAGCGGAGGCGGGTAGACCTTGAGCTTAGTATTATGGAGGTGAAAGATAACCTGAAGAAGGCAGAGGCAGAGCCTACAACTCTGGGAACCACTGTAGATACGTCACACCTAGACAACATAAGTCCCCGTgtgagtgctaagcttgagggtttccaatgggatctacactggtatgccac Alignment from CESAR atAAGGGGGTCCTGGCCAAGCTGGAGCAGACACTGAAGAAAATAGACGAGGAATGCCGGATGGAGGAGAGCAGGCGTGTGGACCTTGAGCTCAGCATCATGGAGGTGAAGGACAACCTGAAGAAGGCAGAGGCTGGGCCCGTGACCCTGGGCACCACTGTGGATACCACGCACCTGGACAACATGAGCCCTCGT tggattcccgaagaatacacttacccacttagctttcctgcctttttcagatAAGGGGGTCCTGGCCAAGTTGGAGCAGATATTGAAGAAAATAGATGAGGAATGCCAGATGGGGGAGCGGAGGCGGGTAGACCTTGAGCTTAGTATTATGGAGGTGAAAGATAACCTGAAGAAGGCAGAGGCAGAGCCTACAACTCTGGGAACCACTGTAGATACGTCACACCTAGACAACATAAGTCCCCGTgtgagtgctaagcttgagggtttccaatgggatctacactggtatgccac Alignment from Spaln_aa2Genome ATAAGGGGGTCCTGGCCAAGCTGGAGCAGACACTGAAGAAAATAGACGAGGAATGCCGGATGGAGGAGAGCAGGCGTGTGGACCTTGAGCTCAGCATCATGGAGGTGAAGGACAACCTGAAGAAGGCAGAGGCTGGGCCCGTGACCCTGGGCACCACTGTGGATACCACGCACCTGGACAACATGAGCCCTCGT tggattcccgaagaatacacttacccacttagctttcctgcctttttcagATAAGGGGGTCCTGGCCAAGTTGGAGCAGATATTGAAGAAAATAGATGAGGAATGCCAGATGGGGGAGCGGAGGCGGGTAGACCTTGAGCTTAGTATTATGGAGGTGAAAGATAACCTGAAGAAGGCAGAGGCAGAGCCTACAACTCTGGGAACCACTGTAGATACGTCACACCTAGACAACATAAGTCCCCGTgtgagtgctaagcttgagggtttccaatgggatctacactggtatgccac Alignment from Spaln_nt2Genome ATAAGGGGGTCCTGGCCAAGCTGGAGCAGACACTGAAGAAAATAGACGAGGAATGCCGGATGGAGGAGAGCAGGCGTGTGGACCTTGAGCTCAGCATCATGGAGGTGAAGGACAACCTGAAGAAGGCAGAGGCTGGGCCCGTGACCCTGGGCACCACTGTGGATACCACGCACCTGGACAACATGAGCCCTCGT tggattcccgaagaatacacttacccacttagctttcctgcctttttcagATAAGGGGGTCCTGGCCAAGTTGGAGCAGATATTGAAGAAAATAGATGAGGAATGCCAGATGGGGGAGCGGAGGCGGGTAGACCTTGAGCTTAGTATTATGGAGGTGAAAGATAACCTGAAGAAGGCAGAGGCAGAGCCTACAACTCTGGGAACCACTGTAGATACGTCACACCTAGACAACATAAGTCCCCGTgtgagtgctaagcttgagggtttccaatgggatctacactggtatgccac Alignment from Pairagon ATAAGGGGGTCCTGGCCAAGCTGGAGCAGACACTGAAGAAAATAGACGAGGAATGCCGGATGGAGGAGAGCAGGCGTGTGGACCTTGAGCTCAGCATCATGGAGGTGAAGGACAACCTGAAGAAGGCAGAGGCTGGGCCCGTGACCCTGGGCACCACTGTGGATACCACGCACCTGGACAACATGAGCCCTCGT tggattcccgaagaatacacttacccacttagctttcctgcctttttcagATAAGGGGGTCCTGGCCAAGTTGGAGCAGATATTGAAGAAAATAGATGAGGAATGCCAGATGGGGGAGCGGAGGCGGGTAGACCTTGAGCTTAGTATTATGGAGGTGAAAGATAACCTGAAGAAGGCAGAGGCAGAGCCTACAACTCTGGGAACCACTGTAGATACGTCACACCTAGACAACATAAGTCCCCGTgtgagtgctaagcttgagggtttccaatgggatctacactggtatgccac Alignment from Exonerate_protein2genome ATAAGGGGGTCCTGGCCAAGCTGGAGCAGACACTGAAGAAAATAGACGAGGAATGCCGGATGGAGGAGAGCAGGCGTGTGGACCTTGAGCTCAGCATCATGGAGGTGAAGGACAACCTGAAGAAGGCAGAGGCTGGGCCCGTGACCCTGGGCACCACTGTGGATACCACGCACCTGGACAACATGAGCCCTCGT tggattcccgaagaatacacttacccacttagctttcctgcctttttcagATAAGGGGGTCCTGGCCAAGTTGGAGCAGATATTGAAGAAAATAGATGAGGAATGCCAGATGGGGGAGCGGAGGCGGGTAGACCTTGAGCTTAGTATTATGGAGGTGAAAGATAACCTGAAGAAGGCAGAGGCAGAGCCTACAACTCTGGGAACCACTGTAGATACGTCACACCTAGACAACATAAGTCCCCGTgtgagtgctaagcttgagggtttccaatgggatctacactggtatgccac Alignment from Exonerate_coding2genome ATAAGGGGGTCCTGGCCAAGCTGGAGCAGACACTGAAGAAAATAGACGAGGAATGCCGGATGGAGGAGAGCAGGCGTGTGGACCTTGAGCTCAGCATCATGGAGGTGAAGGACAACCTGAAGAAGGCAGAGGCTGGGCCCGTGACCCTGGGCACCACTGTGGATACCACGCACCTGGACAACATGAGCCCTCGT tggattcccgaagaatacacttacccacttagctttcctgcctttttcagATAAGGGGGTCCTGGCCAAGTTGGAGCAGATATTGAAGAAAATAGATGAGGAATGCCAGATGGGGGAGCGGAGGCGGGTAGACCTTGAGCTTAGTATTATGGAGGTGAAAGATAACCTGAAGAAGGCAGAGGCAGAGCCTACAACTCTGGGAACCACTGTAGATACGTCACACCTAGACAACATAAGTCCCCGTgtgagtgctaagcttgagggtttccaatgggatctacactggtatgccac Alignment from GeneWise ATAAGGGGGTCCTGGCCAAGCTGGAGCAGACACTGAAGAAAATAGACGAGGAATGCCGGATGGAGGAGAGCAGGCGTGTGGACCTTGAGCTCAGCATCATGGAGGTGAAGGACAACCTGAAGAAGGCAGAGGCTGGGCCCGTGACCCTGGGCACCACTGTGGATACCACGCACCTGGACAACATGAGCCCTCGT tggattcccgaagaatacacttacccacttagctttcctgcctttttcagATAAGGGGGTCCTGGCCAAGTTGGAGCAGATATTGAAGAAAATAGATGAGGAATGCCAGATGGGGGAGCGGAGGCGGGTAGACCTTGAGCTTAGTATTATGGAGGTGAAAGATAACCTGAAGAAGGCAGAGGCAGAGCCTACAACTCTGGGAACCACTGTAGATACGTCACACCTAGACAACATAAGTCCCCGTgtgagtgctaagcttgagggtttccaatgggatctacactggtatgccac #### Afap1l2_ID12247_16 --> 0 - 1 Original Alignment AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAg tgctctttaaaccacctggagccaaatcctaaccattcctgtgctctcagAGGCAGCCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCCACACCACGGAGCACTATTGTTAAGTTGCAT---GATCAGCAGAGGATTTCCTTCCCTGCTAACTGCCCAGATACAATGGCTTCCACCCCCATTTCTGCAAGCGCGCCTGCGAAAGAGAAGTTAAGAGTTACTGGTGCAggtacggggactgagctttgttgctgtagtttgcttgtattgctgagttgg Alignment from CESAR AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAg tgctctttaaaccacctggagccaaatcctaaccattcctgtgctctcagAGGCAGCCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCCACACCACGGAGCACTATTGTTAAGTTGCAT---GATCAGCAGAGGATTTCCTTCCCTGCTAACTGCCCAGATACAATGGCTTCCACCCCCATTTCTGCAAGCGCGCCTGCGAAAGAGAAGTTAAGAGTTACTGGTGCAggtacggggactgagctttgttgctgtagtttgcttgtattgctgagttgg Alignment from Spaln_aa2Genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tgctctttaaaccacctggagccaaatcctaaccattcctgtgctctcagAGGCAGCCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCCACACCACGGAGCACTATTGTTAAGTTGCAT---GATCAGCAGAGGATTTCCTTCCCTGCTAACTGCCCAGATACAATGGCTTCCACCCCCATTTCTGCAAGCGCGCCTGCGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtacggggactgagctttgttgctgtagtttgcttgtattgctgagttgg Alignment from Spaln_nt2Genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tgctctttaaaccacctggagccaaatcctaaccattcctgtgctctcagAGGCAGCCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCCACACCACGGAGCACTATTGTTAAGTTGCA---TGATCAGCAGAGGATTTCCTTCCCTGCTAACTGCCCAGATACAATGGCTTCCACCCCCATTTCTGCAAGCGCGCCTGCGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtacggggactgagctttgttgctgtagtttgcttgtattgctgagttgg Alignment from Pairagon AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tgctctttaaaccacctggagccaaatcctaaccattcctgtgctctcagAGGCAGCCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCCACACCACGGAGCACTATTGTTAAGTTGCA---TGATCAGCAGAGGATTTCCTTCCCTGCTAACTGCCCAGATACAATGGCTTCCACCCCCATTTCTGCAAGCGCGCCTGCGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtacggggactgagctttgttgctgtagtttgcttgtattgctgagttgg Alignment from Exonerate_protein2genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tgctctttaaaccacctggagccaaatcctaaccattcctgtgctctcagAGGCAGCCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCCACACCACGGAGCACTATTGTTAAGTTGCAT---GATCAGCAGAGGATTTCCTTCCCTGCTAACTGCCCAGATACAATGGCTTCCACCCCCATTTCTGCAAGCGCGCCTGCGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtacggggactgagctttgttgctgtagtttgcttgtattgctgagttgg Alignment from Exonerate_coding2genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tgctctttaaaccacctggagccaaatcctaaccattcctgtgctctcagAGGCAGCCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCCACACCACGGAGCACTATTGTTAAGTTGCAT---GATCAGCAGAGGATTTCCTTCCCTGCTAACTGCCCAGATACAATGGCTTCCACCCCCATTTCTGCAAGCGCGCCTGCGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtacggggactgagctttgttgctgtagtttgcttgtattgctgagttgg Alignment from GeneWise AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tgctctttaaaccacctggagccaaatcctaaccattcctgtgctctcagAGGCAGCCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCCACACCACGGAGCACTATTGTTAAGTTGCAT---GATCAGCAGAGGATTTCCTTCCCTGCTAACTGCCCAGATACAATGGCTTCCACCCCCATTTCTGCAAGCGCGCCTGCGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtacggggactgagctttgttgctgtagtttgcttgtattgctgagttgg #### Afap1l2_ID12249_14 --> 1 - 0 Original Alignment aCTGATGCAGAGAAAGTTCTCAGAGCCCAACACATACATCGATGGCCTGCCCAGCCGGGATTGCCAGGACGATCTGTATGATGATGTGGAGGTATCAGAGCTGATAGCCGTG acccttctgctcagaagaggctgggtgccccgtttgctctcatgtttcaggCTGATGCAGAGAAAGTTTTTTGAGCCGAATACATACATAGGTGGGCTACCCAGTCGGGATTGTCAAGATGATCTGTTTGATGATGTGGAGGTATCAAATCTAATAGCAGTGgtaaagacttggcagggggtgtacaacacttggcagagggtgtagttgag Alignment from CESAR aCTGATGCAGAGAAAGTTCTCAGAGCCCAACACATACATCGATGGCCTGCCCAGCCGGGATTGCCAGGACGATCTGTATGATGATGTGGAGGTATCAGAGCTGATAGCCGTG acccttctgctcagaagaggctgggtgccccgtttgctctcatgtttcaggCTGATGCAGAGAAAGTTTTTTGAGCCGAATACATACATAGGTGGGCTACCCAGTCGGGATTGTCAAGATGATCTGTTTGATGATGTGGAGGTATCAAATCTAATAGCAGTGgtaaagacttggcagggggtgtacaacacttggcagagggtgtagttgag Alignment from Spaln_aa2Genome ACTGATGCAGAGAAAGTTCTCAGAGCCCAACACATACATCGATGGCCTGCCCAGCCGGGATTGCCAGGACGATCTGTATGATGATGTGGAGGTATCAGAGCTGATAGCCGTG acccttctgctcagaagaggctgggtgccccgtttgctctcatgtttcagGCTGATGCAGAGAAAGTTTTTTGAGCCGAATACATACATAGGTGGGCTACCCAGTCGGGATTGTCAAGATGATCTGTTTGATGATGTGGAGGTATCAAATCTAATAGCAGTGgtaaagacttggcagggggtgtacaacacttggcagagggtgtagttgag Alignment from Spaln_nt2Genome ACTGATGCAGAGAAAGTTCTCAGAGCCCAACACATACATCGATGGCCTGCCCAGCCGGGATTGCCAGGACGATCTGTATGATGATGTGGAGGTATCAGAGCTGATAGCCGTG acccttctgctcagaagaggctgggtgccccgtttgctctcatgtttcagGCTGATGCAGAGAAAGTTTTTTGAGCCGAATACATACATAGGTGGGCTACCCAGTCGGGATTGTCAAGATGATCTGTTTGATGATGTGGAGGTATCAAATCTAATAGCAGTGgtaaagacttggcagggggtgtacaacacttggcagagggtgtagttgag Alignment from Pairagon ACTGATGCAGAGAAAGTTCTCAGAGCCCAACACATACATCGATGGCCTGCCCAGCCGGGATTGCCAGGACGATCTGTATGATGATGTGGAGGTATCAGAGCTGATAGCCGTG acccttctgctcagaagaggctgggtgccccgtttgctctcatgtttcagGCTGATGCAGAGAAAGTTTTTTGAGCCGAATACATACATAGGTGGGCTACCCAGTCGGGATTGTCAAGATGATCTGTTTGATGATGTGGAGGTATCAAATCTAATAGCAGTGgtaaagacttggcagggggtgtacaacacttggcagagggtgtagttgag Alignment from Exonerate_protein2genome ACTGATGCAGAGAAAGTTCTCAGAGCCCAACACATACATCGATGGCCTGCCCAGCCGGGATTGCCAGGACGATCTGTATGATGATGTGGAGGTATCAGAGCTGATAGCCGTG acccttctgctcagaagaggctgggtgccccgtttgctctcatgtttcagGCTGATGCAGAGAAAGTTTTTTGAGCCGAATACATACATAGGTGGGCTACCCAGTCGGGATTGTCAAGATGATCTGTTTGATGATGTGGAGGTATCAAATCTAATAGCAGTGgtaaagacttggcagggggtgtacaacacttggcagagggtgtagttgag Alignment from Exonerate_coding2genome ACTGATGCAGAGAAAGTTCTCAGAGCCCAACACATACATCGATGGCCTGCCCAGCCGGGATTGCCAGGACGATCTGTATGATGATGTGGAGGTATCAGAGCTGATAGCCGTG acccttctgctcagaagaggctgggtgccccgtttgctctcatgtttcagGCTGATGCAGAGAAAGTTTTTTGAGCCGAATACATACATAGGTGGGCTACCCAGTCGGGATTGTCAAGATGATCTGTTTGATGATGTGGAGGTATCAAATCTAATAGCAGTGgtaaagacttggcagggggtgtacaacacttggcagagggtgtagttgag Alignment from GeneWise ACTGATGCAGAGAAAGTTCTCAGAGCCCAACACATACATCGATGGCCTGCCCAGCCGGGATTGCCAGGACGATCTGTATGATGATGTGGAGGTATCAGAGCTGATAGCCGTG acccttctgctcagaagaggctgggtgccccgtttgctctcatgtttcagGCTGATGCAGAGAAAGTTTTTTGAGCCGAATACATACATAGGTGGGCTACCCAGTCGGGATTGTCAAGATGATCTGTTTGATGATGTGGAGGTATCAAATCTAATAGCAGTGgtaaagacttggcagggggtgtacaacacttggcagagggtgtagttgag #### Afap1l2_ID12251_12 --> 2 - 0 Original Alignment gcTACCTGAATGTGCTGGTGAACAGTCAATGGAAGTCACGCTGGTGCTTCGTTAGAGACAGCCACCTGCACTTCTACCAGGACCGGAACCGGAGCAAGGTGGCCCAGCAGCCCCTCAGCCTGGTGGGCTGTGACGTGCTTCCAGATCCTAGCCCCGACCACCTGTATTCCTTCCGTATTCTCCACAACGGCGAGGAGCTAGCCAAGCTTGAG gtttccaagggatagtttgttcttcattttttgtccatatccaatgctaggcTATGTGAATGTACTAGTTAACAGCCAATGGAAATCACGATGGTGCTTCGTTAGAGACAGC---CTGCACTTCTACCGGGATCGTAACCAGAGCAAGGTAGCCCAGCAGCCTCTCAGTCTGGTGGGGTGTGATATCCTTCCACGTCCCAGCCCTGACCACCTACACTCCTTTGATATTCTCCACAATGGTGAGGAACTAGCAAAGCTTGAGgtaagtttctagtgtgatcaaaaacagttggcaattgttgtcaggctttt Alignment from CESAR gcTACCTGAATGTGCTGGTGAACAGTCAATGGAAGTCACGCTGGTGCTTCGTTAGAGACAGCCACCTGCACTTCTACCAGGACCGGAACCGGAGCAAGGTGGCCCAGCAGCCCCTCAGCCTGGTGGGCTGTGACGTGCTTCCAGATCCTAGCCCCGACCACCTGTATTCCTTCCGTATTCTCCACAACGGCGAGGAGCTAGCCAAGCTTGAG gtttccaagggatagtttgttcttcattttttgtccatatccaatgctaggcTATGTGAATGTACTAGTTAACAGCCAATGGAAATCACGATGGTGCTTCGTTAGAGACAGC---CTGCACTTCTACCGGGATCGTAACCAGAGCAAGGTAGCCCAGCAGCCTCTCAGTCTGGTGGGGTGTGATATCCTTCCACGTCCCAGCCCTGACCACCTACACTCCTTTGATATTCTCCACAATGGTGAGGAACTAGCAAAGCTTGAGgtaagtttctagtgtgatcaaaaacagttggcaattgttgtcaggctttt Alignment from Spaln_aa2Genome GCTACCTGAATGTGCTGGTGAACAGTCAATGGAAGTCACGCTGGTGCTTCGTTAGAGACAGCCACCTGCACTTCTACCAGGACCGGAACCGGAGCAAGGTGGCCCAGCAGCCCCTCAGCCTGGTGGGCTGTGACGTGCTTCCAGATCCTAGCCCCGACCACCTGTATTCCTTCCGTATTCTCCACAACGGCGAGGAGCTAGCCAAGCTTGAG gtttccaagggatagtttgttcttcattttttgtccatatccaatgctagGCTATGTGAATGTACTAGTTAACAGCCAATGGAAATCACGATGGTGCTTCGTTAGAGACAGC---CTGCACTTCTACCGGGATCGTAACCAGAGCAAGGTAGCCCAGCAGCCTCTCAGTCTGGTGGGGTGTGATATCCTTCCACGTCCCAGCCCTGACCACCTACACTCCTTTGATATTCTCCACAATGGTGAGGAACTAGCAAAGCTTGAGgtaagtttctagtgtgatcaaaaacagttggcaattgttgtcaggctttt Alignment from Spaln_nt2Genome GCTACCTGAATGTGCTGGTGAACAGTCAATGGAAGTCACGCTGGTGCTTCGTTAGAGACAGCCACCTGCACTTCTACCAGGACCGGAACCGGAGCAAGGTGGCCCAGCAGCCCCTCAGCCTGGTGGGCTGTGACGTGCTTCCAGATCCTAGCCCCGACCACCTGTATTCCTTCCGTATTCTCCACAACGGCGAGGAGCTAGCCAAGCTTGAG gtttccaagggatagtttgttcttcattttttgtccatatccaatgctagGCTATGTGAATGTACTAGTTAACAGCCAATGGAAATCACGATGGTGCTTCGTTAGAGACAG---CCTGCACTTCTACCGGGATCGTAACCAGAGCAAGGTAGCCCAGCAGCCTCTCAGTCTGGTGGGGTGTGATATCCTTCCACGTCCCAGCCCTGACCACCTACACTCCTTTGATATTCTCCACAATGGTGAGGAACTAGCAAAGCTTGAGgtaagtttctagtgtgatcaaaaacagttggcaattgttgtcaggctttt Alignment from Pairagon GCTACCTGAATGTGCTGGTGAACAGTCAATGGAAGTCACGCTGGTGCTTCGTTAGAGACAGCCACCTGCACTTCTACCAGGACCGGAACCGGAGCAAGGTGGCCCAGCAGCCCCTCAGCCTGGTGGGCTGTGACGTGCTTCCAGATCCTAGCCCCGACCACCTGTATTCCTTCCGTATTCTCCACAACGGCGAGGAGCTAGCCAAGCTTGAG gtttccaagggatagtttgttcttcattttttgtccatatccaatgctagGCTATGTGAATGTACTAGTTAACAGCCAATGGAAATCACGATGGTGCTTCGTTAGAGACAG---CCTGCACTTCTACCGGGATCGTAACCAGAGCAAGGTAGCCCAGCAGCCTCTCAGTCTGGTGGGGTGTGATATCCTTCCACGTCCCAGCCCTGACCACCTACACTCCTTTGATATTCTCCACAATGGTGAGGAACTAGCAAAGCTTGAGgtaagtttctagtgtgatcaaaaacagttggcaattgttgtcaggctttt Alignment from Exonerate_protein2genome GCTACCTGAATGTGCTGGTGAACAGTCAATGGAAGTCACGCTGGTGCTTCGTTAGAGACAGCCACCTGCACTTCTACCAGGACCGGAACCGGAGCAAGGTGGCCCAGCAGCCCCTCAGCCTGGTGGGCTGTGACGTGCTTCCAGATCCTAGCCCCGACCACCTGTATTCCTTCCGTATTCTCCACAACGGCGAGGAGCTAGCCAAGCTTGAG gtttccaagggatagtttgttcttcattttttgtccatatccaatgctagGCTATGTGAATGTACTAGTTAACAGCCAATGGAAATCACGATGGTGCTTCGTTAGAGACAGC---CTGCACTTCTACCGGGATCGTAACCAGAGCAAGGTAGCCCAGCAGCCTCTCAGTCTGGTGGGGTGTGATATCCTTCCACGTCCCAGCCCTGACCACCTACACTCCTTTGATATTCTCCACAATGGTGAGGAACTAGCAAAGCTTGAGgtaagtttctagtgtgatcaaaaacagttggcaattgttgtcaggctttt Alignment from Exonerate_coding2genome GCTACCTGAATGTGCTGGTGAACAGTCAATGGAAGTCACGCTGGTGCTTCGTTAGAGACAGCCACCTGCACTTCTACCAGGACCGGAACCGGAGCAAGGTGGCCCAGCAGCCCCTCAGCCTGGTGGGCTGTGACGTGCTTCCAGATCCTAGCCCCGACCACCTGTATTCCTTCCGTATTCTCCACAACGGCGAGGAGCTAGCCAAGCTTGAG gtttccaagggatagtttgttcttcattttttgtccatatccaatgctagGCTATGTGAATGTACTAGTTAACAGCCAATGGAAATCACGATGGTGCTTCGTTAGAGACAGC---CTGCACTTCTACCGGGATCGTAACCAGAGCAAGGTAGCCCAGCAGCCTCTCAGTCTGGTGGGGTGTGATATCCTTCCACGTCCCAGCCCTGACCACCTACACTCCTTTGATATTCTCCACAATGGTGAGGAACTAGCAAAGCTTGAGgtaagtttctagtgtgatcaaaaacagttggcaattgttgtcaggctttt Alignment from GeneWise GCTACCTGAATGTGCTGGTGAACAGTCAATGGAAGTCACGCTGGTGCTTCGTTAGAGACAGCCACCTGCACTTCTACCAGGACCGGAACCGGAGCAAGGTGGCCCAGCAGCCCCTCAGCCTGGTGGGCTGTGACGTGCTTCCAGATCCTAGCCCCGACCACCTGTATTCCTTCCGTATTCTCCACAACGGCGAGGAGCTAGCCAAGCTTGAG gtttccaagggatagtttgttcttcattttttgtccatatccaatgctagGCTATGTGAATGTACTAGTTAACAGCCAATGGAAATCACGATGGTGCTTCGTTAGAGACAGC---CTGCACTTCTACCGGGATCGTAACCAGAGCAAGGTAGCCCAGCAGCCTCTCAGTCTGGTGGGGTGTGATATCCTTCCACGTCCCAGCCCTGACCACCTACACTCCTTTGATATTCTCCACAATGGTGAGGAACTAGCAAAGCTTGAGgtaagtttctagtgtgatcaaaaacagttggcaattgttgtcaggctttt #### Afap1l2_ID12252_11 --> 2 - 1 Original Alignment tcAAGAAGAAATGCTCTGCTGGCCTCAAGCTGAGCAACCTTATGAACCTGGGCAGGAAGAAATCTACCTCGCTGGAGCCCCCGGAGAGATCCCTTGAGACATCCa gctttggataaattccaagctctgtttctcctctgattgttctcctgcagtcAAGAAGAAGTACTCAGCTGGTGTAAAGCTGAGTAACCTTATGAACCTGGGCCGGAAAAAATCTACATCACTAGAGGCCCCAGAGAGGTCCCTTGAGACATCTggtaaaacctcaagtaatccttgtggctctgggatttttgactctgaactg Alignment from CESAR tcAAGAAGAAATGCTCTGCTGGCCTCAAGCTGAGCAACCTTATGAACCTGGGCAGGAAGAAATCTACCTCGCTGGAGCCCCCGGAGAGATCCCTTGAGACATCCa gctttggataaattccaagctctgtttctcctctgattgttctcctgcagtcAAGAAGAAGTACTCAGCTGGTGTAAAGCTGAGTAACCTTATGAACCTGGGCCGGAAAAAATCTACATCACTAGAGGCCCCAGAGAGGTCCCTTGAGACATCTggtaaaacctcaagtaatccttgtggctctgggatttttgactctgaactg Alignment from Spaln_aa2Genome TCAAGAAGAAATGCTCTGCTGGCCTCAAGCTGAGCAACCTTATGAACCTGGGCAGGAAGAAATCTACCTCGCTGGAGCCCCCGGAGAGATCCCTTGAGACATCCA gctttggataaattccaagctctgtttctcctctgattgttctcctgcagTCAAGAAGAAGTACTCAGCTGGTGTAAAGCTGAGTAACCTTATGAACCTGGGCCGGAAAAAATCTACATCACTAGAGGCCCCAGAGAGGTCCCTTGAGACATCTGgtaaaacctcaagtaatccttgtggctctgggatttttgactctgaactg Alignment from Spaln_nt2Genome TCAAGAAGAAATGCTCTGCTGGCCTCAAGCTGAGCAACCTTATGAACCTGGGCAGGAAGAAATCTACCTCGCTGGAGCCCCCGGAGAGATCCCTTGAGACATCCA gctttggataaattccaagctctgtttctcctctgattgttctcctgcagTCAAGAAGAAGTACTCAGCTGGTGTAAAGCTGAGTAACCTTATGAACCTGGGCCGGAAAAAATCTACATCACTAGAGGCCCCAGAGAGGTCCCTTGAGACATCTGgtaaaacctcaagtaatccttgtggctctgggatttttgactctgaactg Alignment from Pairagon TCAAGAAGAAATGCTCTGCTGGCCTCAAGCTGAGCAACCTTATGAACCTGGGCAGGAAGAAATCTACCTCGCTGGAGCCCCCGGAGAGATCCCTTGAGACATCCA gctttggataaattccaagctctgtttctcctctgattgttctcctgcagTCAAGAAGAAGTACTCAGCTGGTGTAAAGCTGAGTAACCTTATGAACCTGGGCCGGAAAAAATCTACATCACTAGAGGCCCCAGAGAGGTCCCTTGAGACATCTGgtaaaacctcaagtaatccttgtggctctgggatttttgactctgaactg Alignment from Exonerate_protein2genome TCAAGAAGAAATGCTCTGCTGGCCTCAAGCTGAGCAACCTTATGAACCTGGGCAGGAAGAAATCTACCTCGCTGGAGCCCCCGGAGAGATCCCTTGAGACATCCA gctttggataaattccaagctctgtttctcctctgattgttctcctgcagTCAAGAAGAAGTACTCAGCTGGTGTAAAGCTGAGTAACCTTATGAACCTGGGCCGGAAAAAATCTACATCACTAGAGGCCCCAGAGAGGTCCCTTGAGACATCTGgtaaaacctcaagtaatccttgtggctctgggatttttgactctgaactg Alignment from Exonerate_coding2genome TCAAGAAGAAATGCTCTGCTGGCCTCAAGCTGAGCAACCTTATGAACCTGGGCAGGAAGAAATCTACCTCGCTGGAGCCCCCGGAGAGATCCCTTGAGACATCCA gctttggataaattccaagctctgtttctcctctgattgttctcctgcagTCAAGAAGAAGTACTCAGCTGGTGTAAAGCTGAGTAACCTTATGAACCTGGGCCGGAAAAAATCTACATCACTAGAGGCCCCAGAGAGGTCCCTTGAGACATCTGgtaaaacctcaagtaatccttgtggctctgggatttttgactctgaactg Alignment from GeneWise TCAAGAAGAAATGCTCTGCTGGCCTCAAGCTGAGCAACCTTATGAACCTGGGCAGGAAGAAATCTACCTCGCTGGAGCCCCCGGAGAGATCCCTTGAGACATCCA gctttggataaattccaagctctgtttctcctctgattgttctcctgcagTCAAGAAGAAGTACTCAGCTGGTGTAAAGCTGAGTAACCTTATGAACCTGGGCCGGAAAAAATCTACATCACTAGAGGCCCCAGAGAGGTCCCTTGAGACATCTGgtaaaacctcaagtaatccttgtggctctgggatttttgactctgaactg #### Afap1l2_ID12255_8 --> 0 - 0 Original Alignment TGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGG caaaaggtatcttcctggagaattagatacaagctatatgttcttcacagTGCTACAAGTCATCCAAAGACCACAGTCCTCAGCTGGATGTGAACTTGCGAGGCAGCAGCATTGTGCACAAAGAGAAGCAAGTGCGGAAAAAAGGACACAAGCTCAAAATGACACCAATGAACACTGATGTTGTTGCACTTGGCCGACAGAGCAAAGACCAACCTGAGCAGTGGCTTCGGgtagagagagtcccttgcttcctagcactcgccagtgaagacgtttgatt Alignment from CESAR TGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGG caaaaggtatcttcctggagaattagatacaagctatatgttcttcacagTGCTACAAGTCATCCAAAGACCACAGTCCTCAGCTGGATGTGAACTTGCGAGGCAGCAGCATTGTGCACAAAGAGAAGCAAGTGCGGAAAAAAGGACACAAGCTCAAAATGACACCAATGAACACTGATGTTGTTGCACTTGGCCGACAGAGCAAAGACCAACCTGAGCAGTGGCTTCGGgtagagagagtcccttgcttcctagcactcgccagtgaagacgtttgatt Alignment from Spaln_aa2Genome TGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGG caaaaggtatcttcctggagaattagatacaagctatatgttcttcacagTGCTACAAGTCATCCAAAGACCACAGTCCTCAGCTGGATGTGAACTTGCGAGGCAGCAGCATTGTGCACAAAGAGAAGCAAGTGCGGAAAAAAGGACACAAGCTCAAAATGACACCAATGAACACTGATGTTGTTGCACTTGGCCGACAGAGCAAAGACCAACCTGAGCAGTGGCTTCGGgtagagagagtcccttgcttcctagcactcgccagtgaagacgtttgatt Alignment from Spaln_nt2Genome TGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGG caaaaggtatcttcctggagaattagatacaagctatatgttcttcacagTGCTACAAGTCATCCAAAGACCACAGTCCTCAGCTGGATGTGAACTTGCGAGGCAGCAGCATTGTGCACAAAGAGAAGCAAGTGCGGAAAAAAGGACACAAGCTCAAAATGACACCAATGAACACTGATGTTGTTGCACTTGGCCGACAGAGCAAAGACCAACCTGAGCAGTGGCTTCGGgtagagagagtcccttgcttcctagcactcgccagtgaagacgtttgatt Alignment from Pairagon TGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGG caaaaggtatcttcctggagaattagatacaagctatatgttcttcacagTGCTACAAGTCATCCAAAGACCACAGTCCTCAGCTGGATGTGAACTTGCGAGGCAGCAGCATTGTGCACAAAGAGAAGCAAGTGCGGAAAAAAGGACACAAGCTCAAAATGACACCAATGAACACTGATGTTGTTGCACTTGGCCGACAGAGCAAAGACCAACCTGAGCAGTGGCTTCGGgtagagagagtcccttgcttcctagcactcgccagtgaagacgtttgatt Alignment from Exonerate_protein2genome TGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGG caaaaggtatcttcctggagaattagatacaagctatatgttcttcacagTGCTACAAGTCATCCAAAGACCACAGTCCTCAGCTGGATGTGAACTTGCGAGGCAGCAGCATTGTGCACAAAGAGAAGCAAGTGCGGAAAAAAGGACACAAGCTCAAAATGACACCAATGAACACTGATGTTGTTGCACTTGGCCGACAGAGCAAAGACCAACCTGAGCAGTGGCTTCGGgtagagagagtcccttgcttcctagcactcgccagtgaagacgtttgatt Alignment from Exonerate_coding2genome TGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGG caaaaggtatcttcctggagaattagatacaagctatatgttcttcacagTGCTACAAGTCATCCAAAGACCACAGTCCTCAGCTGGATGTGAACTTGCGAGGCAGCAGCATTGTGCACAAAGAGAAGCAAGTGCGGAAAAAAGGACACAAGCTCAAAATGACACCAATGAACACTGATGTTGTTGCACTTGGCCGACAGAGCAAAGACCAACCTGAGCAGTGGCTTCGGgtagagagagtcccttgcttcctagcactcgccagtgaagacgtttgatt Alignment from GeneWise TGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGG caaaaggtatcttcctggagaattagatacaagctatatgttcttcacagTGCTACAAGTCATCCAAAGACCACAGTCCTCAGCTGGATGTGAACTTGCGAGGCAGCAGCATTGTGCACAAAGAGAAGCAAGTGCGGAAAAAAGGACACAAGCTCAAAATGACACCAATGAACACTGATGTTGTTGCACTTGGCCGACAGAGCAAAGACCAACCTGAGCAGTGGCTTCGGgtagagagagtcccttgcttcctagcactcgccagtgaagacgtttgatt #### Ak3_ID6204_4 --> 0 - 2 Original Alignment GGCATTGATGACCTGACCGGAGAACCTCTGATTCAGCGCGAGGATGACAAACCAGAGACAGTGATCAAGAGACTAAAGGCCTATGAAGCCCAGACAGAGCCGGTCCTGCAGTATTACca tatctcaggtctgaaaccccctccttagattaaatcatcttcccatgcagGGGATTGATGACCTTAGTGGCGAACCTCTTATACAGCGTGAGGATGATAGGCCAGAGACTGTAATCAAGCGATTGAAGGCCTGTGAAGCCCAG---GATCCAGTATTGCAGTACTACcagtatgtctgtccctattgtacatttacccaccctgttttaaatttccctc Alignment from CESAR GGCATTGATGACCTGACCGGAGAACCTCTGATTCAGCGCGAGGATGACAAACCAGAGACAGTGATCAAGAGACTAAAGGCCTATGAAGCCCAGACAGAGCCGGTCCTGCAGTATTACca tatctcaggtctgaaaccccctccttagattaaatcatcttcccatgcagGGGATTGATGACCTTAGTGGCGAACCTCTTATACAGCGTGAGGATGATAGGCCAGAGACTGTAATCAAGCGATTGAAGGCCTGTGAAGCCCAG---GATCCAGTATTGCAGTACTACcagtatgtctgtccctattgtacatttacccaccctgttttaaatttccctc Alignment from Spaln_aa2Genome GGCATTGATGACCTGACCGGAGAACCTCTGATTCAGCGCGAGGATGACAAACCAGAGACAGTGATCAAGAGACTAAAGGCCTATGAAGCCCAGACAGAGCCGGTCCTGCAGTATTACCA tatctcaggtctgaaaccccctccttagattaaatcatcttcccatgcagGGGATTGATGACCTTAGTGGCGAACCTCTTATACAGCGTGAGGATGATAGGCCAGAGACTGTAATCAAGCGATTGAAGGCCTGTGAAGCCCAG---GATCCAGTATTGCAGTACTACCAgtatgtctgtccctattgtacatttacccaccctgttttaaatttccctc Alignment from Spaln_nt2Genome GGCATTGATGACCTGACCGGAGAACCTCTGATTCAGCGCGAGGATGACAAACCAGAGACAGTGATCAAGAGACTAAAGGCCTATGAAGCCCAGACAGAGCCGGTCCTGCAGTATTACCA tatctcaggtctgaaaccccctccttagattaaatcatcttcccatgcagGGGATTGATGACCTTAGTGGCGAACCTCTTATACAGCGTGAGGATGATAGGCCAGAGACTGTAATCAAGCGATTGAAGGCCTGTGAAGCCCAG---GATCCAGTATTGCAGTACTACCAgtatgtctgtccctattgtacatttacccaccctgttttaaatttccctc Alignment from Pairagon GGCATTGATGACCTGACCGGAGAACCTCTGATTCAGCGCGAGGATGACAAACCAGAGACAGTGATCAAGAGACTAAAGGCCTATGAAGCCCAGACAGAGCCGGTCCTGCAGTATTACCA tatctcaggtctgaaaccccctccttagattaaatcatcttcccatgcagGGGATTGATGACCTTAGTGGCGAACCTCTTATACAGCGTGAGGATGATAGGCCAGAGACTGTAATCAAGCGATTGAAGGCCTGTGAAGCCCAG---GATCCAGTATTGCAGTACTACCAgtatgtctgtccctattgtacatttacccaccctgttttaaatttccctc Alignment from Exonerate_protein2genome GGCATTGATGACCTGACCGGAGAACCTCTGATTCAGCGCGAGGATGACAAACCAGAGACAGTGATCAAGAGACTAAAGGCCTATGAAGCCCAGACAGAGCCGGTCCTGCAGTATTACCA tatctcaggtctgaaaccccctccttagattaaatcatcttcccatgcagGGGATTGATGACCTTAGTGGCGAACCTCTTATACAGCGTGAGGATGATAGGCCAGAGACTGTAATCAAGCGATTGAAGGCCTGTGAAGCCCAG---GATCCAGTATTGCAGTACTACCAgtatgtctgtccctattgtacatttacccaccctgttttaaatttccctc Alignment from Exonerate_coding2genome GGCATTGATGACCTGACCGGAGAACCTCTGATTCAGCGCGAGGATGACAAACCAGAGACAGTGATCAAGAGACTAAAGGCCTATGAAGCCCAGACAGAGCCGGTCCTGCAGTATTACCA tatctcaggtctgaaaccccctccttagattaaatcatcttcccatgcagGGGATTGATGACCTTAGTGGCGAACCTCTTATACAGCGTGAGGATGATAGGCCAGAGACTGTAATCAAGCGATTGAAGGCCTGTGAAGCCCAG---GATCCAGTATTGCAGTACTACCAgtatgtctgtccctattgtacatttacccaccctgttttaaatttccctc Alignment from GeneWise GGCATTGATGACCTGACCGGAGAACCTCTGATTCAGCGCGAGGATGACAAACCAGAGACAGTGATCAAGAGACTAAAGGCCTATGAAGCCCAGACAGAGCCGGTCCTGCAGTATTACCA tatctcaggtctgaaaccccctccttagattaaatcatcttcccatgcagGGGATTGATGACCTTAGTGGCGAACCTCTTATACAGCGTGAGGATGATAGGCCAGAGACTGTAATCAAGCGATTGAAGGCCTGTGAAGCCCAG---GATCCAGTATTGCAGTACTACCAgtatgtctgtccctattgtacatttacccaccctgttttaaatttccctc #### Aldh18a1_ID7967_16 --> 2 - 1 Original Alignment agAAAACAGCGGAGTTCTTCCTCCAGCACGTGGACAGCGCCTGTGTCTTCTGGAACGCCAGTACTCGCTTCTCTGATGGTTACCGCTTTGGACTGg gctccatcatcagttctttttagtgatctgctgcgcttccccactctcagagAAAGCAGAAAAATTCTTTCTCCAGCATGTGGATAGTGCTTGTGTCTTCTGGAATGCCAGTACCCGCTTCTCAGATGCACATCGGTTTGGACTAggtaaaggagactatgatacccacataacaatcatatgcactgagccggga Alignment from CESAR agAAAACAGCGGAGTTCTTCCTCCAGCACGTGGACAGCGCCTGTGTCTTCTGGAACGCCAGTACTCGCTTCTCTGATGGTTACCGCTTTGGACTGg gctccatcatcagttctttttagtgatctgctgcgcttccccactctcagagAAAGCAGAAAAATTCTTTCTCCAGCATGTGGATAGTGCTTGTGTCTTCTGGAATGCCAGTACCCGCTTCTCAGATGCACATCGGTTTGGACTAggtaaaggagactatgatacccacataacaatcatatgcactgagccggga Alignment from Spaln_aa2Genome AGAAAACAGCGGAGTTCTTCCTCCAGCACGTGGACAGCGCCTGTGTCTTCTGGAACGCCAGTACTCGCTTCTCTGATGGTTACCGCTTTGGACTGG gctccatcatcagttctttttagtgatctgctgcgcttccccactctcagAGAAAGCAGAAAAATTCTTTCTCCAGCATGTGGATAGTGCTTGTGTCTTCTGGAATGCCAGTACCCGCTTCTCAGATGCACATCGGTTTGGACTAGgtaaaggagactatgatacccacataacaatcatatgcactgagccggga Alignment from Spaln_nt2Genome AGAAAACAGCGGAGTTCTTCCTCCAGCACGTGGACAGCGCCTGTGTCTTCTGGAACGCCAGTACTCGCTTCTCTGATGGTTACCGCTTTGGACTGG gctccatcatcagttctttttagtgatctgctgcgcttccccactctcagAGAAAGCAGAAAAATTCTTTCTCCAGCATGTGGATAGTGCTTGTGTCTTCTGGAATGCCAGTACCCGCTTCTCAGATGCACATCGGTTTGGACTAGgtaaaggagactatgatacccacataacaatcatatgcactgagccggga Alignment from Pairagon AGAAAACAGCGGAGTTCTTCCTCCAGCACGTGGACAGCGCCTGTGTCTTCTGGAACGCCAGTACTCGCTTCTCTGATGGTTACCGCTTTGGACTGG gctccatcatcagttctttttagtgatctgctgcgcttccccactctcagAGAAAGCAGAAAAATTCTTTCTCCAGCATGTGGATAGTGCTTGTGTCTTCTGGAATGCCAGTACCCGCTTCTCAGATGCACATCGGTTTGGACTAGgtaaaggagactatgatacccacataacaatcatatgcactgagccggga Alignment from Exonerate_protein2genome AGAAAACAGCGGAGTTCTTCCTCCAGCACGTGGACAGCGCCTGTGTCTTCTGGAACGCCAGTACTCGCTTCTCTGATGGTTACCGCTTTGGACTGG gctccatcatcagttctttttagtgatctgctgcgcttccccactctcagAGAAAGCAGAAAAATTCTTTCTCCAGCATGTGGATAGTGCTTGTGTCTTCTGGAATGCCAGTACCCGCTTCTCAGATGCACATCGGTTTGGACTAGgtaaaggagactatgatacccacataacaatcatatgcactgagccggga Alignment from Exonerate_coding2genome AGAAAACAGCGGAGTTCTTCCTCCAGCACGTGGACAGCGCCTGTGTCTTCTGGAACGCCAGTACTCGCTTCTCTGATGGTTACCGCTTTGGACTGG gctccatcatcagttctttttagtgatctgctgcgcttccccactctcagAGAAAGCAGAAAAATTCTTTCTCCAGCATGTGGATAGTGCTTGTGTCTTCTGGAATGCCAGTACCCGCTTCTCAGATGCACATCGGTTTGGACTAGgtaaaggagactatgatacccacataacaatcatatgcactgagccggga Alignment from GeneWise AGAAAACAGCGGAGTTCTTCCTCCAGCACGTGGACAGCGCCTGTGTCTTCTGGAACGCCAGTACTCGCTTCTCTGATGGTTACCGCTTTGGACTGG gctccatcatcagttctttttagtgatctgctgcgcttccccactctcagAGAAAGCAGAAAAATTCTTTCTCCAGCATGTGGATAGTGCTTGTGTCTTCTGGAATGCCAGTACCCGCTTCTCAGATGCACATCGGTTTGGACTAGgtaaaggagactatgatacccacataacaatcatatgcactgagccggga #### Aldh18a1_ID7970_13 --> 0 - 1 Original Alignment GTAAACACCAGAGAAGAAGTTGAGGATCTCTGCCGCCTTGACAAAATAATAGATCTGATCATTCCCCGAGGCTCCTCCCAGCTGGTCAGAGACATCCAGAAAGCTGCCAAAGGGATCCCAGTGATGGGCCACAGCGAAGGCATCTGCCACATGTACGTGGATTCCGAAGCCAGCGTGGACAAGGTCACCCGACTCg tagtaagtatcatctagagggtgatccaaactacacacatgtccgctcagGTAAACACAAGAGAAGAAGTTGAGGATCTGTGCTGTCTAGACAAAATAATAGATCTTATCATTCCCCGAGGATCCTCACGACTAGTAAAAGACATTCAAAAAGCTGCCAAGGGCATTCCAGTAATGGGCCATAGTGAAGGTATCTACTATATGTATGTTGATTCTGAAGCTAGTGTGGATAAGGTCACCTGCCTGggtatggtgactttgaagccctaagtcttcaagagaaggattatcttggag Alignment from CESAR GTAAACACCAGAGAAGAAGTTGAGGATCTCTGCCGCCTTGACAAAATAATAGATCTGATCATTCCCCGAGGCTCCTCCCAGCTGGTCAGAGACATCCAGAAAGCTGCCAAAGGGATCCCAGTGATGGGCCACAGCGAAGGCATCTGCCACATGTACGTGGATTCCGAAGCCAGCGTGGACAAGGTCACCCGACTCg tagtaagtatcatctagagggtgatccaaactacacacatgtccgctcagGTAAACACAAGAGAAGAAGTTGAGGATCTGTGCTGTCTAGACAAAATAATAGATCTTATCATTCCCCGAGGATCCTCACGACTAGTAAAAGACATTCAAAAAGCTGCCAAGGGCATTCCAGTAATGGGCCATAGTGAAGGTATCTACTATATGTATGTTGATTCTGAAGCTAGTGTGGATAAGGTCACCTGCCTGggtatggtgactttgaagccctaagtcttcaagagaaggattatcttggag Alignment from Spaln_aa2Genome GTAAACACCAGAGAAGAAGTTGAGGATCTCTGCCGCCTTGACAAAATAATAGATCTGATCATTCCCCGAGGCTCCTCCCAGCTGGTCAGAGACATCCAGAAAGCTGCCAAAGGGATCCCAGTGATGGGCCACAGCGAAGGCATCTGCCACATGTACGTGGATTCCGAAGCCAGCGTGGACAAGGTCACCCGACTCG tagtaagtatcatctagagggtgatccaaactacacacatgtccgctcagGTAAACACAAGAGAAGAAGTTGAGGATCTGTGCTGTCTAGACAAAATAATAGATCTTATCATTCCCCGAGGATCCTCACGACTAGTAAAAGACATTCAAAAAGCTGCCAAGGGCATTCCAGTAATGGGCCATAGTGAAGGTATCTACTATATGTATGTTGATTCTGAAGCTAGTGTGGATAAGGTCACCTGCCTGGgtatggtgactttgaagccctaagtcttcaagagaaggattatcttggag Alignment from Spaln_nt2Genome GTAAACACCAGAGAAGAAGTTGAGGATCTCTGCCGCCTTGACAAAATAATAGATCTGATCATTCCCCGAGGCTCCTCCCAGCTGGTCAGAGACATCCAGAAAGCTGCCAAAGGGATCCCAGTGATGGGCCACAGCGAAGGCATCTGCCACATGTACGTGGATTCCGAAGCCAGCGTGGACAAGGTCACCCGACTCG tagtaagtatcatctagagggtgatccaaactacacacatgtccgctcagGTAAACACAAGAGAAGAAGTTGAGGATCTGTGCTGTCTAGACAAAATAATAGATCTTATCATTCCCCGAGGATCCTCACGACTAGTAAAAGACATTCAAAAAGCTGCCAAGGGCATTCCAGTAATGGGCCATAGTGAAGGTATCTACTATATGTATGTTGATTCTGAAGCTAGTGTGGATAAGGTCACCTGCCTGGgtatggtgactttgaagccctaagtcttcaagagaaggattatcttggag Alignment from Pairagon GTAAACACCAGAGAAGAAGTTGAGGATCTCTGCCGCCTTGACAAAATAATAGATCTGATCATTCCCCGAGGCTCCTCCCAGCTGGTCAGAGACATCCAGAAAGCTGCCAAAGGGATCCCAGTGATGGGCCACAGCGAAGGCATCTGCCACATGTACGTGGATTCCGAAGCCAGCGTGGACAAGGTCACCCGACTCG tagtaagtatcatctagagggtgatccaaactacacacatgtccgctcagGTAAACACAAGAGAAGAAGTTGAGGATCTGTGCTGTCTAGACAAAATAATAGATCTTATCATTCCCCGAGGATCCTCACGACTAGTAAAAGACATTCAAAAAGCTGCCAAGGGCATTCCAGTAATGGGCCATAGTGAAGGTATCTACTATATGTATGTTGATTCTGAAGCTAGTGTGGATAAGGTCACCTGCCTGGgtatggtgactttgaagccctaagtcttcaagagaaggattatcttggag Alignment from Exonerate_protein2genome GTAAACACCAGAGAAGAAGTTGAGGATCTCTGCCGCCTTGACAAAATAATAGATCTGATCATTCCCCGAGGCTCCTCCCAGCTGGTCAGAGACATCCAGAAAGCTGCCAAAGGGATCCCAGTGATGGGCCACAGCGAAGGCATCTGCCACATGTACGTGGATTCCGAAGCCAGCGTGGACAAGGTCACCCGACTCG tagtaagtatcatctagagggtgatccaaactacacacatgtccgctcagGTAAACACAAGAGAAGAAGTTGAGGATCTGTGCTGTCTAGACAAAATAATAGATCTTATCATTCCCCGAGGATCCTCACGACTAGTAAAAGACATTCAAAAAGCTGCCAAGGGCATTCCAGTAATGGGCCATAGTGAAGGTATCTACTATATGTATGTTGATTCTGAAGCTAGTGTGGATAAGGTCACCTGCCTGGgtatggtgactttgaagccctaagtcttcaagagaaggattatcttggag Alignment from Exonerate_coding2genome GTAAACACCAGAGAAGAAGTTGAGGATCTCTGCCGCCTTGACAAAATAATAGATCTGATCATTCCCCGAGGCTCCTCCCAGCTGGTCAGAGACATCCAGAAAGCTGCCAAAGGGATCCCAGTGATGGGCCACAGCGAAGGCATCTGCCACATGTACGTGGATTCCGAAGCCAGCGTGGACAAGGTCACCCGACTCG tagtaagtatcatctagagggtgatccaaactacacacatgtccgctcagGTAAACACAAGAGAAGAAGTTGAGGATCTGTGCTGTCTAGACAAAATAATAGATCTTATCATTCCCCGAGGATCCTCACGACTAGTAAAAGACATTCAAAAAGCTGCCAAGGGCATTCCAGTAATGGGCCATAGTGAAGGTATCTACTATATGTATGTTGATTCTGAAGCTAGTGTGGATAAGGTCACCTGCCTGGgtatggtgactttgaagccctaagtcttcaagagaaggattatcttggag Alignment from GeneWise GTAAACACCAGAGAAGAAGTTGAGGATCTCTGCCGCCTTGACAAAATAATAGATCTGATCATTCCCCGAGGCTCCTCCCAGCTGGTCAGAGACATCCAGAAAGCTGCCAAAGGGATCCCAGTGATGGGCCACAGCGAAGGCATCTGCCACATGTACGTGGATTCCGAAGCCAGCGTGGACAAGGTCACCCGACTCG tagtaagtatcatctagagggtgatccaaactacacacatgtccgctcagGTAAACACAAGAGAAGAAGTTGAGGATCTGTGCTGTCTAGACAAAATAATAGATCTTATCATTCCCCGAGGATCCTCACGACTAGTAAAAGACATTCAAAAAGCTGCCAAGGGCATTCCAGTAATGGGCCATAGTGAAGGTATCTACTATATGTATGTTGATTCTGAAGCTAGTGTGGATAAGGTCACCTGCCTGGgtatggtgactttgaagccctaagtcttcaagagaaggattatcttggag #### Aldh18a1_ID7975_8 --> 0 - 1 Original Alignment GTGAAAGCCGCCCTCTGGGCTTTGCAAGGCGGGACTTCTGTCGTCATTGCCAACGGGACCCACCCAAAGGTGTCTGGGCACGTCATCACAGACATCGTGGAGGGAAAGAAAGTTGGCACCTTCTTTTCAGAAGTGAAGCCTGCTg agaaaataaattgtggtggctctcagcttcttttcttttcttgttaacagGTAAAAGCTGCTCTTTGGGCATTGCAGGGTGGAACCTCTGTCGTCATTGCGAATGGGACCCACCCAAAGGTGCCTGGGCATGTTATCACAGATGTTGTGGAGGGGAAGAAAGTTGGCACATTCTTTCCAGAGCTGAAACCTGCTggtgggtcacaacggtcccaacctagtgctatacacactggccctataagt Alignment from CESAR GTGAAAGCCGCCCTCTGGGCTTTGCAAGGCGGGACTTCTGTCGTCATTGCCAACGGGACCCACCCAAAGGTGTCTGGGCACGTCATCACAGACATCGTGGAGGGAAAGAAAGTTGGCACCTTCTTTTCAGAAGTGAAGCCTGCTg agaaaataaattgtggtggctctcagcttcttttcttttcttgttaacagGTAAAAGCTGCTCTTTGGGCATTGCAGGGTGGAACCTCTGTCGTCATTGCGAATGGGACCCACCCAAAGGTGCCTGGGCATGTTATCACAGATGTTGTGGAGGGGAAGAAAGTTGGCACATTCTTTCCAGAGCTGAAACCTGCTggtgggtcacaacggtcccaacctagtgctatacacactggccctataagt Alignment from Spaln_aa2Genome GTGAAAGCCGCCCTCTGGGCTTTGCAAGGCGGGACTTCTGTCGTCATTGCCAACGGGACCCACCCAAAGGTGTCTGGGCACGTCATCACAGACATCGTGGAGGGAAAGAAAGTTGGCACCTTCTTTTCAGAAGTGAAGCCTGCTG agaaaataaattgtggtggctctcagcttcttttcttttcttgttaacagGTAAAAGCTGCTCTTTGGGCATTGCAGGGTGGAACCTCTGTCGTCATTGCGAATGGGACCCACCCAAAGGTGCCTGGGCATGTTATCACAGATGTTGTGGAGGGGAAGAAAGTTGGCACATTCTTTCCAGAGCTGAAACCTGCTGgtgggtcacaacggtcccaacctagtgctatacacactggccctataagt Alignment from Spaln_nt2Genome GTGAAAGCCGCCCTCTGGGCTTTGCAAGGCGGGACTTCTGTCGTCATTGCCAACGGGACCCACCCAAAGGTGTCTGGGCACGTCATCACAGACATCGTGGAGGGAAAGAAAGTTGGCACCTTCTTTTCAGAAGTGAAGCCTGCTG agaaaataaattgtggtggctctcagcttcttttcttttcttgttaacagGTAAAAGCTGCTCTTTGGGCATTGCAGGGTGGAACCTCTGTCGTCATTGCGAATGGGACCCACCCAAAGGTGCCTGGGCATGTTATCACAGATGTTGTGGAGGGGAAGAAAGTTGGCACATTCTTTCCAGAGCTGAAACCTGCTGgtgggtcacaacggtcccaacctagtgctatacacactggccctataagt Alignment from Pairagon GTGAAAGCCGCCCTCTGGGCTTTGCAAGGCGGGACTTCTGTCGTCATTGCCAACGGGACCCACCCAAAGGTGTCTGGGCACGTCATCACAGACATCGTGGAGGGAAAGAAAGTTGGCACCTTCTTTTCAGAAGTGAAGCCTGCTG agaaaataaattgtggtggctctcagcttcttttcttttcttgttaacagGTAAAAGCTGCTCTTTGGGCATTGCAGGGTGGAACCTCTGTCGTCATTGCGAATGGGACCCACCCAAAGGTGCCTGGGCATGTTATCACAGATGTTGTGGAGGGGAAGAAAGTTGGCACATTCTTTCCAGAGCTGAAACCTGCTGgtgggtcacaacggtcccaacctagtgctatacacactggccctataagt Alignment from Exonerate_protein2genome GTGAAAGCCGCCCTCTGGGCTTTGCAAGGCGGGACTTCTGTCGTCATTGCCAACGGGACCCACCCAAAGGTGTCTGGGCACGTCATCACAGACATCGTGGAGGGAAAGAAAGTTGGCACCTTCTTTTCAGAAGTGAAGCCTGCTG agaaaataaattgtggtggctctcagcttcttttcttttcttgttaacagGTAAAAGCTGCTCTTTGGGCATTGCAGGGTGGAACCTCTGTCGTCATTGCGAATGGGACCCACCCAAAGGTGCCTGGGCATGTTATCACAGATGTTGTGGAGGGGAAGAAAGTTGGCACATTCTTTCCAGAGCTGAAACCTGCTGgtgggtcacaacggtcccaacctagtgctatacacactggccctataagt Alignment from Exonerate_coding2genome GTGAAAGCCGCCCTCTGGGCTTTGCAAGGCGGGACTTCTGTCGTCATTGCCAACGGGACCCACCCAAAGGTGTCTGGGCACGTCATCACAGACATCGTGGAGGGAAAGAAAGTTGGCACCTTCTTTTCAGAAGTGAAGCCTGCTG agaaaataaattgtggtggctctcagcttcttttcttttcttgttaacagGTAAAAGCTGCTCTTTGGGCATTGCAGGGTGGAACCTCTGTCGTCATTGCGAATGGGACCCACCCAAAGGTGCCTGGGCATGTTATCACAGATGTTGTGGAGGGGAAGAAAGTTGGCACATTCTTTCCAGAGCTGAAACCTGCTGgtgggtcacaacggtcccaacctagtgctatacacactggccctataagt Alignment from GeneWise GTGAAAGCCGCCCTCTGGGCTTTGCAAGGCGGGACTTCTGTCGTCATTGCCAACGGGACCCACCCAAAGGTGTCTGGGCACGTCATCACAGACATCGTGGAGGGAAAGAAAGTTGGCACCTTCTTTTCAGAAGTGAAGCCTGCTG agaaaataaattgtggtggctctcagcttcttttcttttcttgttaacagGTAAAAGCTGCTCTTTGGGCATTGCAGGGTGGAACCTCTGTCGTCATTGCGAATGGGACCCACCCAAAGGTGCCTGGGCATGTTATCACAGATGTTGTGGAGGGGAAGAAAGTTGGCACATTCTTTCCAGAGCTGAAACCTGCTGgtgggtcacaacggtcccaacctagtgctatacacactggccctataagt #### Aldh1a1_ID4788_2 --> 0 - 0 Original Alignment ATCTTCATAAACAATGAATGGCACAATTCAGTGAGCGGCAAGAAATTTCCAGTTCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGACAAG tacaatactcaaagaaaatgtatcttggtttttcttcctttctattctagATCTTCATAAACAATGGATGGCACAACTCCGTGAGTGGAAAGAAATTTCCTGTTCTTAATCCGGCAACTGAGGAGGTTATCTGTCATGTGGAAGAAGGTGACAAAgtaggcgatggaattggcacaggttaacgagggaaggagttaaccctata Alignment from CESAR ATCTTCATAAACAATGAATGGCACAATTCAGTGAGCGGCAAGAAATTTCCAGTTCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGACAAG tacaatactcaaagaaaatgtatcttggtttttcttcctttctattctagATCTTCATAAACAATGGATGGCACAACTCCGTGAGTGGAAAGAAATTTCCTGTTCTTAATCCGGCAACTGAGGAGGTTATCTGTCATGTGGAAGAAGGTGACAAAgtaggcgatggaattggcacaggttaacgagggaaggagttaaccctata Alignment from Spaln_aa2Genome ATCTTCATAAACAATGAATGGCACAATTCAGTGAGCGGCAAGAAATTTCCAGTTCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGACAAG tacaatactcaaagaaaatgtatcttggtttttcttcctttctattctagATCTTCATAAACAATGGATGGCACAACTCCGTGAGTGGAAAGAAATTTCCTGTTCTTAATCCGGCAACTGAGGAGGTTATCTGTCATGTGGAAGAAGGTGACAAAgtaggcgatggaattggcacaggttaacgagggaaggagttaaccctata Alignment from Spaln_nt2Genome ATCTTCATAAACAATGAATGGCACAATTCAGTGAGCGGCAAGAAATTTCCAGTTCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGACAAG tacaatactcaaagaaaatgtatcttggtttttcttcctttctattctagATCTTCATAAACAATGGATGGCACAACTCCGTGAGTGGAAAGAAATTTCCTGTTCTTAATCCGGCAACTGAGGAGGTTATCTGTCATGTGGAAGAAGGTGACAAAgtaggcgatggaattggcacaggttaacgagggaaggagttaaccctata Alignment from Pairagon ATCTTCATAAACAATGAATGGCACAATTCAGTGAGCGGCAAGAAATTTCCAGTTCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGACAAG tacaatactcaaagaaaatgtatcttggtttttcttcctttctattctagATCTTCATAAACAATGGATGGCACAACTCCGTGAGTGGAAAGAAATTTCCTGTTCTTAATCCGGCAACTGAGGAGGTTATCTGTCATGTGGAAGAAGGTGACAAAgtaggcgatggaattggcacaggttaacgagggaaggagttaaccctata Alignment from Exonerate_protein2genome ATCTTCATAAACAATGAATGGCACAATTCAGTGAGCGGCAAGAAATTTCCAGTTCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGACAAG tacaatactcaaagaaaatgtatcttggtttttcttcctttctattctagATCTTCATAAACAATGGATGGCACAACTCCGTGAGTGGAAAGAAATTTCCTGTTCTTAATCCGGCAACTGAGGAGGTTATCTGTCATGTGGAAGAAGGTGACAAAgtaggcgatggaattggcacaggttaacgagggaaggagttaaccctata Alignment from Exonerate_coding2genome ATCTTCATAAACAATGAATGGCACAATTCAGTGAGCGGCAAGAAATTTCCAGTTCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGACAAG tacaatactcaaagaaaatgtatcttggtttttcttcctttctattctagATCTTCATAAACAATGGATGGCACAACTCCGTGAGTGGAAAGAAATTTCCTGTTCTTAATCCGGCAACTGAGGAGGTTATCTGTCATGTGGAAGAAGGTGACAAAgtaggcgatggaattggcacaggttaacgagggaaggagttaaccctata Alignment from GeneWise ATCTTCATAAACAATGAATGGCACAATTCAGTGAGCGGCAAGAAATTTCCAGTTCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGACAAG tacaatactcaaagaaaatgtatcttggtttttcttcctttctattctagATCTTCATAAACAATGGATGGCACAACTCCGTGAGTGGAAAGAAATTTCCTGTTCTTAATCCGGCAACTGAGGAGGTTATCTGTCATGTGGAAGAAGGTGACAAAgtaggcgatggaattggcacaggttaacgagggaaggagttaaccctata #### Aldh1a1_ID4791_4 --> 0 - 1 Original Alignment ACAATGGAGGCACTCAATGGTGGGAAAGTCTTTGCCAATGCATACTTGTCGGATTTAGGAGGCTGCATAAAAGCATTAAAGTACTGTGCAGGCTGGGCTGACAAGATTCATGGTCAAACAATACCAAGTg ttcagttggaatgctgaaacacttcaggccctttccttgtgttcccatagACAATGGAGGCACTAAATGGTGGGAAAGTCTTTGCCAATGCATATTTGTCAGATCTAGGAGGCTGCATAAAAGCATTAAAGTACTGTGCGGGCTGGGCTGATAGAATTTATGGGCAAACAATACCAAGTggtaggaatacctagaacatttgtcatgctcacaagacttggcaatctctc Alignment from CESAR ACAATGGAGGCACTCAATGGTGGGAAAGTCTTTGCCAATGCATACTTGTCGGATTTAGGAGGCTGCATAAAAGCATTAAAGTACTGTGCAGGCTGGGCTGACAAGATTCATGGTCAAACAATACCAAGTg ttcagttggaatgctgaaacacttcaggccctttccttgtgttcccatagACAATGGAGGCACTAAATGGTGGGAAAGTCTTTGCCAATGCATATTTGTCAGATCTAGGAGGCTGCATAAAAGCATTAAAGTACTGTGCGGGCTGGGCTGATAGAATTTATGGGCAAACAATACCAAGTggtaggaatacctagaacatttgtcatgctcacaagacttggcaatctctc Alignment from Spaln_aa2Genome ACAATGGAGGCACTCAATGGTGGGAAAGTCTTTGCCAATGCATACTTGTCGGATTTAGGAGGCTGCATAAAAGCATTAAAGTACTGTGCAGGCTGGGCTGACAAGATTCATGGTCAAACAATACCAAGTG ttcagttggaatgctgaaacacttcaggccctttccttgtgttcccatagACAATGGAGGCACTAAATGGTGGGAAAGTCTTTGCCAATGCATATTTGTCAGATCTAGGAGGCTGCATAAAAGCATTAAAGTACTGTGCGGGCTGGGCTGATAGAATTTATGGGCAAACAATACCAAGTGgtaggaatacctagaacatttgtcatgctcacaagacttggcaatctctc Alignment from Spaln_nt2Genome ACAATGGAGGCACTCAATGGTGGGAAAGTCTTTGCCAATGCATACTTGTCGGATTTAGGAGGCTGCATAAAAGCATTAAAGTACTGTGCAGGCTGGGCTGACAAGATTCATGGTCAAACAATACCAAGTG ttcagttggaatgctgaaacacttcaggccctttccttgtgttcccatagACAATGGAGGCACTAAATGGTGGGAAAGTCTTTGCCAATGCATATTTGTCAGATCTAGGAGGCTGCATAAAAGCATTAAAGTACTGTGCGGGCTGGGCTGATAGAATTTATGGGCAAACAATACCAAGTGgtaggaatacctagaacatttgtcatgctcacaagacttggcaatctctc Alignment from Pairagon ACAATGGAGGCACTCAATGGTGGGAAAGTCTTTGCCAATGCATACTTGTCGGATTTAGGAGGCTGCATAAAAGCATTAAAGTACTGTGCAGGCTGGGCTGACAAGATTCATGGTCAAACAATACCAAGTG ttcagttggaatgctgaaacacttcaggccctttccttgtgttcccatagACAATGGAGGCACTAAATGGTGGGAAAGTCTTTGCCAATGCATATTTGTCAGATCTAGGAGGCTGCATAAAAGCATTAAAGTACTGTGCGGGCTGGGCTGATAGAATTTATGGGCAAACAATACCAAGTGgtaggaatacctagaacatttgtcatgctcacaagacttggcaatctctc Alignment from Exonerate_protein2genome ACAATGGAGGCACTCAATGGTGGGAAAGTCTTTGCCAATGCATACTTGTCGGATTTAGGAGGCTGCATAAAAGCATTAAAGTACTGTGCAGGCTGGGCTGACAAGATTCATGGTCAAACAATACCAAGTG ttcagttggaatgctgaaacacttcaggccctttccttgtgttcccatagACAATGGAGGCACTAAATGGTGGGAAAGTCTTTGCCAATGCATATTTGTCAGATCTAGGAGGCTGCATAAAAGCATTAAAGTACTGTGCGGGCTGGGCTGATAGAATTTATGGGCAAACAATACCAAGTGgtaggaatacctagaacatttgtcatgctcacaagacttggcaatctctc Alignment from Exonerate_coding2genome ACAATGGAGGCACTCAATGGTGGGAAAGTCTTTGCCAATGCATACTTGTCGGATTTAGGAGGCTGCATAAAAGCATTAAAGTACTGTGCAGGCTGGGCTGACAAGATTCATGGTCAAACAATACCAAGTG ttcagttggaatgctgaaacacttcaggccctttccttgtgttcccatagACAATGGAGGCACTAAATGGTGGGAAAGTCTTTGCCAATGCATATTTGTCAGATCTAGGAGGCTGCATAAAAGCATTAAAGTACTGTGCGGGCTGGGCTGATAGAATTTATGGGCAAACAATACCAAGTGgtaggaatacctagaacatttgtcatgctcacaagacttggcaatctctc Alignment from GeneWise ACAATGGAGGCACTCAATGGTGGGAAAGTCTTTGCCAATGCATACTTGTCGGATTTAGGAGGCTGCATAAAAGCATTAAAGTACTGTGCAGGCTGGGCTGACAAGATTCATGGTCAAACAATACCAAGTG ttcagttggaatgctgaaacacttcaggccctttccttgtgttcccatagACAATGGAGGCACTAAATGGTGGGAAAGTCTTTGCCAATGCATATTTGTCAGATCTAGGAGGCTGCATAAAAGCATTAAAGTACTGTGCGGGCTGGGCTGATAGAATTTATGGGCAAACAATACCAAGTGgtaggaatacctagaacatttgtcatgctcacaagacttggcaatctctc #### Aldh1a1_ID4792_5 --> 2 - 0 Original Alignment atGGAGACATTTTCACTTATACAAGACGTGAACCTATTGGAGTGTGTGGCCAAATCATCCCC aataatacttctatgccagaggttaatgcacaagcatttttaaaatttagatGGAGATATTTTCACTTATTCCAGACGGGAACCTATTGGAGTGTGTGGCCAGATCATACCAgtagaatctcctttactgtccctggtgggcacaacaaggcataataacac Alignment from CESAR atGGAGACATTTTCACTTATACAAGACGTGAACCTATTGGAGTGTGTGGCCAAATCATCCCC aataatacttctatgccagaggttaatgcacaagcatttttaaaatttagatGGAGATATTTTCACTTATTCCAGACGGGAACCTATTGGAGTGTGTGGCCAGATCATACCAgtagaatctcctttactgtccctggtgggcacaacaaggcataataacac Alignment from Spaln_aa2Genome ATGGAGACATTTTCACTTATACAAGACGTGAACCTATTGGAGTGTGTGGCCAAATCATCCCC aataatacttctatgccagaggttaatgcacaagcatttttaaaatttagATGGAGATATTTTCACTTATTCCAGACGGGAACCTATTGGAGTGTGTGGCCAGATCATACCAgtagaatctcctttactgtccctggtgggcacaacaaggcataataacac Alignment from Spaln_nt2Genome ATGGAGACATTTTCACTTATACAAGACGTGAACCTATTGGAGTGTGTGGCCAAATCATCCCC aataatacttctatgccagaggttaatgcacaagcatttttaaaatttagATGGAGATATTTTCACTTATTCCAGACGGGAACCTATTGGAGTGTGTGGCCAGATCATACCAgtagaatctcctttactgtccctggtgggcacaacaaggcataataacac Alignment from Pairagon ATGGAGACATTTTCACTTATACAAGACGTGAACCTATTGGAGTGTGTGGCCAAATCATCCCC aataatacttctatgccagaggttaatgcacaagcatttttaaaatttagATGGAGATATTTTCACTTATTCCAGACGGGAACCTATTGGAGTGTGTGGCCAGATCATACCAgtagaatctcctttactgtccctggtgggcacaacaaggcataataacac Alignment from Exonerate_protein2genome ATGGAGACATTTTCACTTATACAAGACGTGAACCTATTGGAGTGTGTGGCCAAATCATCCCC aataatacttctatgccagaggttaatgcacaagcatttttaaaatttagATGGAGATATTTTCACTTATTCCAGACGGGAACCTATTGGAGTGTGTGGCCAGATCATACCAgtagaatctcctttactgtccctggtgggcacaacaaggcataataacac Alignment from Exonerate_coding2genome ATGGAGACATTTTCACTTATACAAGACGTGAACCTATTGGAGTGTGTGGCCAAATCATCCCC aataatacttctatgccagaggttaatgcacaagcatttttaaaatttagATGGAGATATTTTCACTTATTCCAGACGGGAACCTATTGGAGTGTGTGGCCAGATCATACCAgtagaatctcctttactgtccctggtgggcacaacaaggcataataacac Alignment from GeneWise ATGGAGACATTTTCACTTATACAAGACGTGAACCTATTGGAGTGTGTGGCCAAATCATCCCC aataatacttctatgccagaggttaatgcacaagcatttttaaaatttagATGGAGATATTTTCACTTATTCCAGACGGGAACCTATTGGAGTGTGTGGCCAGATCATACCAgtagaatctcctttactgtccctggtgggcacaacaaggcataataacac #### Aldh1a1_ID4795_8 --> 0 - 1 Original Alignment GTTGGCAAGTTAATCAAGGAAGCTGCAGGGAAAAGCAATCTGAAGAGAGTCACCCTGGAGCTGGGGGGAAAGAGCCCTTGCATTGTGTTTGCAGATGCCGACt ctgagccccctgaccttggctactgtgcctgcctgtgccctcttttgcagATTGGAAAGATAATCAAGGAAGCTGCAGGGAAAAGTAATTTGGAGAGGGTTACCTTAGAGCTGGGGGGGAAGAGCCCTTGTATTGTATTTACAGATACTGATtgtgagcgacaggcctctatatttctttaattttccttgtagtgtgttaca Alignment from CESAR GTTGGCAAGTTAATCAAGGAAGCTGCAGGGAAAAGCAATCTGAAGAGAGTCACCCTGGAGCTGGGGGGAAAGAGCCCTTGCATTGTGTTTGCAGATGCCGACt ctgagccccctgaccttggctactgtgcctgcctgtgccctcttttgcagATTGGAAAGATAATCAAGGAAGCTGCAGGGAAAAGTAATTTGGAGAGGGTTACCTTAGAGCTGGGGGGGAAGAGCCCTTGTATTGTATTTACAGATACTGATtgtgagcgacaggcctctatatttctttaattttccttgtagtgtgttaca Alignment from Spaln_aa2Genome GTTGGCAAGTTAATCAAGGAAGCTGCAGGGAAAAGCAATCTGAAGAGAGTCACCCTGGAGCTGGGGGGAAAGAGCCCTTGCATTGTGTTTGCAGATGCCGACT ctgagccccctgaccttggctactgtgcctgcctgtgccctcttttgcagATTGGAAAGATAATCAAGGAAGCTGCAGGGAAAAGTAATTTGGAGAGGGTTACCTTAGAGCTGGGGGGGAAGAGCCCTTGTATTGTATTTACAGATACTGATTgtgagcgacaggcctctatatttctttaattttccttgtagtgtgttaca Alignment from Spaln_nt2Genome GTTGGCAAGTTAATCAAGGAAGCTGCAGGGAAAAGCAATCTGAAGAGAGTCACCCTGGAGCTGGGGGGAAAGAGCCCTTGCATTGTGTTTGCAGATGCCGACT ctgagccccctgaccttggctactgtgcctgcctgtgccctcttttgcagATTGGAAAGATAATCAAGGAAGCTGCAGGGAAAAGTAATTTGGAGAGGGTTACCTTAGAGCTGGGGGGGAAGAGCCCTTGTATTGTATTTACAGATACTGATTgtgagcgacaggcctctatatttctttaattttccttgtagtgtgttaca Alignment from Pairagon GTTGGCAAGTTAATCAAGGAAGCTGCAGGGAAAAGCAATCTGAAGAGAGTCACCCTGGAGCTGGGGGGAAAGAGCCCTTGCATTGTGTTTGCAGATGCCGACT ctgagccccctgaccttggctactgtgcctgcctgtgccctcttttgcagATTGGAAAGATAATCAAGGAAGCTGCAGGGAAAAGTAATTTGGAGAGGGTTACCTTAGAGCTGGGGGGGAAGAGCCCTTGTATTGTATTTACAGATACTGATTgtgagcgacaggcctctatatttctttaattttccttgtagtgtgttaca Alignment from Exonerate_protein2genome GTTGGCAAGTTAATCAAGGAAGCTGCAGGGAAAAGCAATCTGAAGAGAGTCACCCTGGAGCTGGGGGGAAAGAGCCCTTGCATTGTGTTTGCAGATGCCGACT ctgagccccctgaccttggctactgtgcctgcctgtgccctcttttgcagATTGGAAAGATAATCAAGGAAGCTGCAGGGAAAAGTAATTTGGAGAGGGTTACCTTAGAGCTGGGGGGGAAGAGCCCTTGTATTGTATTTACAGATACTGATTgtgagcgacaggcctctatatttctttaattttccttgtagtgtgttaca Alignment from Exonerate_coding2genome GTTGGCAAGTTAATCAAGGAAGCTGCAGGGAAAAGCAATCTGAAGAGAGTCACCCTGGAGCTGGGGGGAAAGAGCCCTTGCATTGTGTTTGCAGATGCCGACT ctgagccccctgaccttggctactgtgcctgcctgtgccctcttttgcagATTGGAAAGATAATCAAGGAAGCTGCAGGGAAAAGTAATTTGGAGAGGGTTACCTTAGAGCTGGGGGGGAAGAGCCCTTGTATTGTATTTACAGATACTGATTgtgagcgacaggcctctatatttctttaattttccttgtagtgtgttaca Alignment from GeneWise GTTGGCAAGTTAATCAAGGAAGCTGCAGGGAAAAGCAATCTGAAGAGAGTCACCCTGGAGCTGGGGGGAAAGAGCCCTTGCATTGTGTTTGCAGATGCCGACT ctgagccccctgaccttggctactgtgcctgcctgtgccctcttttgcagATTGGAAAGATAATCAAGGAAGCTGCAGGGAAAAGTAATTTGGAGAGGGTTACCTTAGAGCTGGGGGGGAAGAGCCCTTGTATTGTATTTACAGATACTGATTgtgagcgacaggcctctatatttctttaattttccttgtagtgtgttaca #### Aldh3b1_ID199_8 --> 0 - 1 Original Alignment GTTATCAAACAGGTGTTGGCCCGGACCAGCAGCGGGGGATTCTGTGGGAATGATGGCTTCATGCACATGACCCTGTCCAGCCTTCCTTTTGGAGGAGTGg cactgtgtcatggcccaggcctagacaattctccccacttttggttctagGTTATCAGACAAGTGTTAACGCCAACAAGCAGTGGAGGGTTCTGTGGAAATGATGGTTTCACGCACATGACTCTGTCCAGCATCCCTTTTGGTGGGGTTggtaggcacgcaggtttgtcttgagttcccaatgtggtctactccatgtcc Alignment from CESAR GTTATCAAACAGGTGTTGGCCCGGACCAGCAGCGGGGGATTCTGTGGGAATGATGGCTTCATGCACATGACCCTGTCCAGCCTTCCTTTTGGAGGAGTGg cactgtgtcatggcccaggcctagacaattctccccacttttggttctagGTTATCAGACAAGTGTTAACGCCAACAAGCAGTGGAGGGTTCTGTGGAAATGATGGTTTCACGCACATGACTCTGTCCAGCATCCCTTTTGGTGGGGTTggtaggcacgcaggtttgtcttgagttcccaatgtggtctactccatgtcc Alignment from Spaln_aa2Genome GTTATCAAACAGGTGTTGGCCCGGACCAGCAGCGGGGGATTCTGTGGGAATGATGGCTTCATGCACATGACCCTGTCCAGCCTTCCTTTTGGAGGAGTGG cactgtgtcatggcccaggcctagacaattctccccacttttggttctagGTTATCAGACAAGTGTTAACGCCAACAAGCAGTGGAGGGTTCTGTGGAAATGATGGTTTCACGCACATGACTCTGTCCAGCATCCCTTTTGGTGGGGTTGgtaggcacgcaggtttgtcttgagttcccaatgtggtctactccatgtcc Alignment from Spaln_nt2Genome GTTATCAAACAGGTGTTGGCCCGGACCAGCAGCGGGGGATTCTGTGGGAATGATGGCTTCATGCACATGACCCTGTCCAGCCTTCCTTTTGGAGGAGTGG cactgtgtcatggcccaggcctagacaattctccccacttttggttctagGTTATCAGACAAGTGTTAACGCCAACAAGCAGTGGAGGGTTCTGTGGAAATGATGGTTTCACGCACATGACTCTGTCCAGCATCCCTTTTGGTGGGGTTGgtaggcacgcaggtttgtcttgagttcccaatgtggtctactccatgtcc Alignment from Pairagon GTTATCAAACAGGTGTTGGCCCGGACCAGCAGCGGGGGATTCTGTGGGAATGATGGCTTCATGCACATGACCCTGTCCAGCCTTCCTTTTGGAGGAGTGG cactgtgtcatggcccaggcctagacaattctccccacttttggttctagGTTATCAGACAAGTGTTAACGCCAACAAGCAGTGGAGGGTTCTGTGGAAATGATGGTTTCACGCACATGACTCTGTCCAGCATCCCTTTTGGTGGGGTTGgtaggcacgcaggtttgtcttgagttcccaatgtggtctactccatgtcc Alignment from Exonerate_protein2genome GTTATCAAACAGGTGTTGGCCCGGACCAGCAGCGGGGGATTCTGTGGGAATGATGGCTTCATGCACATGACCCTGTCCAGCCTTCCTTTTGGAGGAGTGG cactgtgtcatggcccaggcctagacaattctccccacttttggttctagGTTATCAGACAAGTGTTAACGCCAACAAGCAGTGGAGGGTTCTGTGGAAATGATGGTTTCACGCACATGACTCTGTCCAGCATCCCTTTTGGTGGGGTTGgtaggcacgcaggtttgtcttgagttcccaatgtggtctactccatgtcc Alignment from Exonerate_coding2genome GTTATCAAACAGGTGTTGGCCCGGACCAGCAGCGGGGGATTCTGTGGGAATGATGGCTTCATGCACATGACCCTGTCCAGCCTTCCTTTTGGAGGAGTGG cactgtgtcatggcccaggcctagacaattctccccacttttggttctagGTTATCAGACAAGTGTTAACGCCAACAAGCAGTGGAGGGTTCTGTGGAAATGATGGTTTCACGCACATGACTCTGTCCAGCATCCCTTTTGGTGGGGTTGgtaggcacgcaggtttgtcttgagttcccaatgtggtctactccatgtcc Alignment from GeneWise GTTATCAAACAGGTGTTGGCCCGGACCAGCAGCGGGGGATTCTGTGGGAATGATGGCTTCATGCACATGACCCTGTCCAGCCTTCCTTTTGGAGGAGTGG cactgtgtcatggcccaggcctagacaattctccccacttttggttctagGTTATCAGACAAGTGTTAACGCCAACAAGCAGTGGAGGGTTCTGTGGAAATGATGGTTTCACGCACATGACTCTGTCCAGCATCCCTTTTGGTGGGGTTGgtaggcacgcaggtttgtcttgagttcccaatgtggtctactccatgtcc #### Aldh3b1_ID202_5 --> 0 - 1 Original Alignment AGCTGCTTTACTGTGGTACTGGGTGGGCGTCAGGAGACCGGGCAGCTGCTGGAACACAAGTTCGACTACATCTTCTTCACAg atggggccagaggccaaggtctaaggacggttgtttcttcttccctgcagAGCTGCTTTACTGTGGTACTTGGTGGTCACCAGGAAACAGGGCTGCTGCTTGAAGATAAGTTTGAATATATCTTCTTTACAggtaaggttagatggagtcagtcctcactagagtgatcttgtcaccacttc Alignment from CESAR AGCTGCTTTACTGTGGTACTGGGTGGGCGTCAGGAGACCGGGCAGCTGCTGGAACACAAGTTCGACTACATCTTCTTCACAg atggggccagaggccaaggtctaaggacggttgtttcttcttccctgcagAGCTGCTTTACTGTGGTACTTGGTGGTCACCAGGAAACAGGGCTGCTGCTTGAAGATAAGTTTGAATATATCTTCTTTACAggtaaggttagatggagtcagtcctcactagagtgatcttgtcaccacttc Alignment from Spaln_aa2Genome AGCTGCTTTACTGTGGTACTGGGTGGGCGTCAGGAGACCGGGCAGCTGCTGGAACACAAGTTCGACTACATCTTCTTCACAG atggggccagaggccaaggtctaaggacggttgtttcttcttccctgcagAGCTGCTTTACTGTGGTACTTGGTGGTCACCAGGAAACAGGGCTGCTGCTTGAAGATAAGTTTGAATATATCTTCTTTACAGgtaaggttagatggagtcagtcctcactagagtgatcttgtcaccacttc Alignment from Spaln_nt2Genome AGCTGCTTTACTGTGGTACTGGGTGGGCGTCAGGAGACCGGGCAGCTGCTGGAACACAAGTTCGACTACATCTTCTTCACAG atggggccagaggccaaggtctaaggacggttgtttcttcttccctgcagAGCTGCTTTACTGTGGTACTTGGTGGTCACCAGGAAACAGGGCTGCTGCTTGAAGATAAGTTTGAATATATCTTCTTTACAGgtaaggttagatggagtcagtcctcactagagtgatcttgtcaccacttc Alignment from Pairagon AGCTGCTTTACTGTGGTACTGGGTGGGCGTCAGGAGACCGGGCAGCTGCTGGAACACAAGTTCGACTACATCTTCTTCACAG atggggccagaggccaaggtctaaggacggttgtttcttcttccctgcagAGCTGCTTTACTGTGGTACTTGGTGGTCACCAGGAAACAGGGCTGCTGCTTGAAGATAAGTTTGAATATATCTTCTTTACAGgtaaggttagatggagtcagtcctcactagagtgatcttgtcaccacttc Alignment from Exonerate_protein2genome AGCTGCTTTACTGTGGTACTGGGTGGGCGTCAGGAGACCGGGCAGCTGCTGGAACACAAGTTCGACTACATCTTCTTCACAG atggggccagaggccaaggtctaaggacggttgtttcttcttccctgcagAGCTGCTTTACTGTGGTACTTGGTGGTCACCAGGAAACAGGGCTGCTGCTTGAAGATAAGTTTGAATATATCTTCTTTACAGgtaaggttagatggagtcagtcctcactagagtgatcttgtcaccacttc Alignment from Exonerate_coding2genome AGCTGCTTTACTGTGGTACTGGGTGGGCGTCAGGAGACCGGGCAGCTGCTGGAACACAAGTTCGACTACATCTTCTTCACAG atggggccagaggccaaggtctaaggacggttgtttcttcttccctgcagAGCTGCTTTACTGTGGTACTTGGTGGTCACCAGGAAACAGGGCTGCTGCTTGAAGATAAGTTTGAATATATCTTCTTTACAGgtaaggttagatggagtcagtcctcactagagtgatcttgtcaccacttc Alignment from GeneWise AGCTGCTTTACTGTGGTACTGGGTGGGCGTCAGGAGACCGGGCAGCTGCTGGAACACAAGTTCGACTACATCTTCTTCACAG atggggccagaggccaaggtctaaggacggttgtttcttcttccctgcagAGCTGCTTTACTGTGGTACTTGGTGGTCACCAGGAAACAGGGCTGCTGCTTGAAGATAAGTTTGAATATATCTTCTTTACAGgtaaggttagatggagtcagtcctcactagagtgatcttgtcaccacttc #### Aldh3b2_ID239_5 --> 2 - 0 Original Alignment gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG AGCTGCT agcatacaagccgtagctgtttttccacgtttttctttttaaacgtctaggaAATTGTGTGGTATTGAGGCCATCTGATATTAGTAAGAACACGGAA---ATGCAGGCAGAGCTACTG---CGGCATCTCGATCAGgtagggctgattgtgcaagttcgattatcttccgccatcccagAGCTGTT Alignment from CESAR gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG AGCTGCT agcatacaagccgtagctgtttttccacgtttttctttttaaacgtctaggaAATTGTGTGGTATTGAGGCCATCTGATATTAGTAAGAACACGGAA---ATGCAGGCAGAGCTACTG---CGGCATCTCGATCAGgtagggctgattgtgcaagttctttttgtctctgcctctttagAGCTGTT Alignment from Spaln_aa2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG AGCTGCT agcatacaagccgtagctgtttttccacgtttttctttttaaacgtctagGAAATTGTGTGGTATTGAGGCCATCTGATATTAGTAAGAACACGGAA---ATGCAGGCAGAGCTACTG---CGGCATCTCGATCAGgtagggctgattgtgcaagttcgattatcttccgccatcccagAGCTGTT Alignment from Spaln_nt2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG AGCTGCT agcatacaagccgtagctgtttttccacgtttttctttttaaacgtctagGAAATTGTGTGGTATTGAGGCCATCTGATATTAGTAAGAACACGGAAA---TGCAGGCAGAGCTACTG---CGGCATCTCGATCAGgtagggctgattgtgcaagttcgattatcttccgccatcccagAGCTGTT Alignment from Pairagon GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG AGCTGCT agcatacaagccgtagctgtttttccacgtttttctttttaaacgtctagGAAATTGTGTGGTATTGAGGCCATCTGATATTAGTAAGAACACGGAAA---TGCAGGCAGAGCTACTG---CGGCATCTCGATCAGgtagggctgattgtgcaagttcgattatcttccgccatcccagAGCTGTT Alignment from Exonerate_protein2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG AGCTGCT agcatacaagccgtagctgtttttccacgtttttctttttaaacgtctagGAAATTGTGTGGTATTGAGGCCATCTGATATTAGTAAGAACACGGAA---ATGCAGGCAGAGCTACTG---CGGCATCTCGATCAGgtagggctgattgtgcaagttcgattatcttccgccatcccagAGCTGTT Alignment from Exonerate_coding2genome GACCAGAGCTGCT agcatacaagccgtagctgtttttccacgtttttctttttaaacgtctaggaaattgtgtggtattgaggccatctgatattagtaagaacacggaaatgcaggcagagctactgcggcatctcgatcaggtagggctgattgtgcaagttcgattatcttccgccaTCCCAGAGCTGTT Alignment from GeneWise GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG AGCTGCT agcatacaagccgtagctgtttttccacgtttttctttttaaacgtctagGAAATTGTGTGGTATTGAGGCCATCTGATATTAGTAAGAACACGGAA---ATGCAGGCAGAGCTACTG---CGGCATCTCGATCAGgtagggctgattgtgcaagttcgattatcttccgccatcccagAGCTGTT #### Ankrd13d_ID460_13 --> 2 - 0 Original Alignment gaAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG cccatctggctttctgtcaaacctttgtttccttttccttctacttgaagggGGCCTTTATCCTTGTGAGGTAGATTCCACGGTGTTTGAGGCATCTGAGGGATACAGTGCCTTAGGTGCCAAGCACAGTGAGCCTCTCCAGGATAAAGACGATGAGCTTCTGCAGTTTGCTATCCAGCAAAGCCTCCTAGAGGCAGCAATACAGGCAGAGCAGgtaagcagtgatatagttagtatgaccttaatgcctcaggcccatgggga Alignment from CESAR gaAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG cccatctggctttctgtcaaacctttgtttccttttccttctacttgaagggGGCCTTTATCCTTGTGAGGTAGATTCCACGGTGTTTGAGGCATCTGAGGGATACAGTGCCTTAGGTGCCAAGCACAGTGAGCCTCTCCAGGATAAAGACGATGAGCTTCTGCAGTTTGCTATCCAGCAAAGCCTCCTAGAGGCAGCAATACAGGCAGAGCAGgtaagcagtgatatagttagtatgaccttaatgcctcaggcccatgggga Alignment from Spaln_aa2Genome GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG cccatctggctttctgtcaaacctttgtttccttttccttctacttgaagGGGGCCTTTATCCTTGTGAGGTAGATTCCACGGTGTTTGAGGCATCTGAGGGATACAGTGCCTTAGGTGCCAAGCACAGTGAGCCTCTCCAGGATAAAGACGATGAGCTTCTGCAGTTTGCTATCCAGCAAAGCCTCCTAGAGGCAGCAATACAGGCAGAGCAGgtaagcagtgatatagttagtatgaccttaatgcctcaggcccatgggga Alignment from Spaln_nt2Genome GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG cccatctggctttctgtcaaacctttgtttccttttccttctacttgaagGGGGCCTTTATCCTTGTGAGGTAGATTCCACGGTGTTTGAGGCATCTGAGGGATACAGTGCCTTAGGTGCCAAGCACAGTGAGCCTCTCCAGGATAAAGACGATGAGCTTCTGCAGTTTGCTATCCAGCAAAGCCTCCTAGAGGCAGCAATACAGGCAGAGCAGgtaagcagtgatatagttagtatgaccttaatgcctcaggcccatgggga Alignment from Pairagon -----------------------------------------------------GCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG CCCATCTGGCTTTCTGTCAAACCTTTGTTTCCTTTTCCTTCTACTTGAAGGGGGCCTTTATCCTTGTGAGGTAGATTCCACGGTGTTTGAGGCATCTGAGGGATACAGTGCCTTAGGTGCCAAGCACAGTGAGCCTCTCCAGGATAAAGACGATGAGCTTCTGCAGTTTGCTATCCAGCAAAGCCTCCTAGAGGCAGCAATACAGGCAGAGCAGgtaagcagtgatatagttagtatgaccttaatgcctcaggcccatgggga Alignment from Exonerate_protein2genome GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG cccatctggctttctgtcaaacctttgtttccttttccttctacttgaagGGGGCCTTTATCCTTGTGAGGTAGATTCCACGGTGTTTGAGGCATCTGAGGGATACAGTGCCTTAGGTGCCAAGCACAGTGAGCCTCTCCAGGATAAAGACGATGAGCTTCTGCAGTTTGCTATCCAGCAAAGCCTCCTAGAGGCAGCAATACAGGCAGAGCAGgtaagcagtgatatagttagtatgaccttaatgcctcaggcccatgggga Alignment from Exonerate_coding2genome GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG cccatctggctttctgtcaaacctttgtttccttttccttctacttgaagGGGGCCTTTATCCTTGTGAGGTAGATTCCACGGTGTTTGAGGCATCTGAGGGATACAGTGCCTTAGGTGCCAAGCACAGTGAGCCTCTCCAGGATAAAGACGATGAGCTTCTGCAGTTTGCTATCCAGCAAAGCCTCCTAGAGGCAGCAATACAGGCAGAGCAGgtaagcagtgatatagttagtatgaccttaatgcctcaggcccatgggga Alignment from GeneWise GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAGGTGACG-------------------------------------------- cccatctggctttctgtcaaacctttgtttccttttccttctacttgaagGGGGCCTTTATCCTTGTGAGGTAGATTCCACGGTGTTTGAGGCATCTGAGGGATACAGTGCCTTAGGTGCCAAGCACAGTGAGCCTCTCCAGGATAAAGACGATGAGCTTCTGCAGTTTGCTATCCAGCAAAGCCTCCTAGAGGCAGCAATACAGGCAGAGCAGGTAAGCAGTGATATAGTTAGTATGACCTTAATGCCTCAGGCCCATGGGGA #### Ankrd13d_ID461_12 --> 2 - 1 Original Alignment agATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAg gtacaaaattacatgttactgggtacttaggtttttattcccttccttagaaATTGCCCTCTTCCATGTGCACAATGCCCGCACCACCTTTAGTAACCTATGCGGCTGTGATGAACCTGTG---TCAGTGTGTGTCCCCAACTCCAGTCTGGCAATTTCTGCTTCAggtgattctatagccatatcagatattcccatctggctttctgtcaaacct Alignment from CESAR agATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAg gtacaaaattacatgttactgggtacttaggtttttattcccttccttagaaATTGCCCTCTTCCATGTGCACAATGCCCGCACCACCTTTAGTAACCTATGCGGCTGTGATGAACCTGTG---TCAGTGTGTGTCCCCAACTCCAGTCTGGCAATTTCTGCTTCAggtgattctatagccatatcagatattcccatctggctttctgtcaaacct Alignment from Spaln_aa2Genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG gtacaaaattacatgttactgggtacttaggtttttattcccttccttagAAATTGCCCTCTTCCATGTGCACAATGCCCGCACCACCTTTAGTAACCTATGCGGCTGTGATGAACCTGTGTCA---GTGTGTGTCCCCAACTCCAGTCTGGCAATTTCTGCTTCAGgtgattctatagccatatcagatattcccatctggctttctgtcaaacct Alignment from Spaln_nt2Genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG gtacaaaattacatgttactgggtacttaggtttttattcccttccttagAAATTGCCCTCTTCCATGTGCACAATGCCCGCACCACCTTTAGTAACCTATGCGGCTGTGATGAACCTGTG---TCAGTGTGTGTCCCCAACTCCAGTCTGGCAATTTCTGCTTCAGgtgattctatagccatatcagatattcccatctggctttctgtcaaacct Alignment from Pairagon AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG gtacaaaattacatgttactgggtacttaggtttttattcccttccttagAAATTGCCCTCTTCCATGTGCACAATGCCCGCACCACCTTTAGTAACCTATGCGGCTGTGATGAACCTGTG---TCAGTGTGTGTCCCCAACTCCAGTCTGGCAATTTCTGCTTCAGgtgattctatagccatatcagatattcccatctggctttctgtcaaacct Alignment from Exonerate_protein2genome ATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG gtacaaaattacatgttactgggtacttaggtttttattcccttccttagaaATTGCCCTCTTCCATGTGCACAATGCCCGCACCACCTTTAGTAACCTATGCGGCTGTGATGAACCTGTG---TCAGTGTGTGTCCCCAACTCCAGTCTGGCAATTTCTGCTTCAGgtgattctatagccatatcagatattcccatctggctttctgtcaaacct Alignment from Exonerate_coding2genome ATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG gtacaaaattacatgttactgggtacttaggtttttattcccttccttagaaATTGCCCTCTTCCATGTGCACAATGCCCGCACCACCTTTAGTAACCTATGCGGCTGTGATGAACCTGTG---TCAGTGTGTGTCCCCAACTCCAGTCTGGCAATTTCTGCTTCAGgtgattctatagccatatcagatattcccatctggctttctgtcaaacct Alignment from GeneWise -------------------------------------------------GAGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG GTACAAAATTACATGTTACTGGGTACTTAGGTTTTTATTCCCTTCCTTAGAAATTGCCCTCTTCCATGTGCACAATGCCCGCACCACCTTTAGTAACCTATGCGGCTGTGATGAACCTGTG---TCAGTGTGTGTCCCCAACTCCAGTCTGGCAATTTCTGCTTCAGgtgattctatagccatatcagatattcccatctggctttctgtcaaacct #### Ankrd13d_ID468_5 --> 2 - 1 Original Alignment taCCTCTTGTGTCCAAGATGTGCCCGAGCGATGTGTACCGTGTGTGGAAGCGGGGTGAGAGTCTGCGGGTGGACACTAGTCTCTTGGGCTTTGAGCACATGACCTGGCAGCGTGGCCGAAGGAGCTTCATCTTCAGGGGTCAGg atgtattttggtgggatcagatacccaatctgtgctctcctgtttcttagtaCCTCTCGTGTCCAAGATGTGCACAAGTGATGTGTACTGTGTGTGGAAACGTGGTGAAAGCCTACGAGTGGATGCTAGTCTCCTTGGTTTTGAGCATATGACCTGGCAACGTGGCCAGAGGAGCTACATCTTCAGGGACCATggtacgtgtcatccaccccagtgagcgggaatttaggagaatgggtttcat Alignment from CESAR taCCTCTTGTGTCCAAGATGTGCCCGAGCGATGTGTACCGTGTGTGGAAGCGGGGTGAGAGTCTGCGGGTGGACACTAGTCTCTTGGGCTTTGAGCACATGACCTGGCAGCGTGGCCGAAGGAGCTTCATCTTCAGGGGTCAGg atgtattttggtgggatcagatacccaatctgtgctctcctgtttcttagtaCCTCTCGTGTCCAAGATGTGCACAAGTGATGTGTACTGTGTGTGGAAACGTGGTGAAAGCCTACGAGTGGATGCTAGTCTCCTTGGTTTTGAGCATATGACCTGGCAACGTGGCCAGAGGAGCTACATCTTCAGGGACCATggtacgtgtcatccaccccagtgagcgggaatttaggagaatgggtttcat Alignment from Spaln_aa2Genome TACCTCTTGTGTCCAAGATGTGCCCGAGCGATGTGTACCGTGTGTGGAAGCGGGGTGAGAGTCTGCGGGTGGACACTAGTCTCTTGGGCTTTGAGCACATGACCTGGCAGCGTGGCCGAAGGAGCTTCATCTTCAGGGGTCAGG atgtattttggtgggatcagatacccaatctgtgctctcctgtttcttagTACCTCTCGTGTCCAAGATGTGCACAAGTGATGTGTACTGTGTGTGGAAACGTGGTGAAAGCCTACGAGTGGATGCTAGTCTCCTTGGTTTTGAGCATATGACCTGGCAACGTGGCCAGAGGAGCTACATCTTCAGGGACCATGgtacgtgtcatccaccccagtgagcgggaatttaggagaatgggtttcat Alignment from Spaln_nt2Genome TACCTCTTGTGTCCAAGATGTGCCCGAGCGATGTGTACCGTGTGTGGAAGCGGGGTGAGAGTCTGCGGGTGGACACTAGTCTCTTGGGCTTTGAGCACATGACCTGGCAGCGTGGCCGAAGGAGCTTCATCTTCAGGGGTCAGG atgtattttggtgggatcagatacccaatctgtgctctcctgtttcttagTACCTCTCGTGTCCAAGATGTGCACAAGTGATGTGTACTGTGTGTGGAAACGTGGTGAAAGCCTACGAGTGGATGCTAGTCTCCTTGGTTTTGAGCATATGACCTGGCAACGTGGCCAGAGGAGCTACATCTTCAGGGACCATGgtacgtgtcatccaccccagtgagcgggaatttaggagaatgggtttcat Alignment from Pairagon TACCTCTTGTGTCCAAGATGTGCCCGAGCGATGTGTACCGTGTGTGGAAGCGGGGTGAGAGTCTGCGGGTGGACACTAGTCTCTTGGGCTTTGAGCACATGACCTGGCAGCGTGGCCGAAGGAGCTTCATCTTCAGGGGTCAGG atgtattttggtgggatcagatacccaatctgtgctctcctgtttcttagTACCTCTCGTGTCCAAGATGTGCACAAGTGATGTGTACTGTGTGTGGAAACGTGGTGAAAGCCTACGAGTGGATGCTAGTCTCCTTGGTTTTGAGCATATGACCTGGCAACGTGGCCAGAGGAGCTACATCTTCAGGGACCATGgtacgtgtcatccaccccagtgagcgggaatttaggagaatgggtttcat Alignment from Exonerate_protein2genome TACCTCTTGTGTCCAAGATGTGCCCGAGCGATGTGTACCGTGTGTGGAAGCGGGGTGAGAGTCTGCGGGTGGACACTAGTCTCTTGGGCTTTGAGCACATGACCTGGCAGCGTGGCCGAAGGAGCTTCATCTTCAGGGGTCAGG atgtattttggtgggatcagatacccaatctgtgctctcctgtttcttagTACCTCTCGTGTCCAAGATGTGCACAAGTGATGTGTACTGTGTGTGGAAACGTGGTGAAAGCCTACGAGTGGATGCTAGTCTCCTTGGTTTTGAGCATATGACCTGGCAACGTGGCCAGAGGAGCTACATCTTCAGGGACCATGgtacgtgtcatccaccccagtgagcgggaatttaggagaatgggtttcat Alignment from Exonerate_coding2genome TACCTCTTGTGTCCAAGATGTGCCCGAGCGATGTGTACCGTGTGTGGAAGCGGGGTGAGAGTCTGCGGGTGGACACTAGTCTCTTGGGCTTTGAGCACATGACCTGGCAGCGTGGCCGAAGGAGCTTCATCTTCAGGGGTCAGG atgtattttggtgggatcagatacccaatctgtgctctcctgtttcttagTACCTCTCGTGTCCAAGATGTGCACAAGTGATGTGTACTGTGTGTGGAAACGTGGTGAAAGCCTACGAGTGGATGCTAGTCTCCTTGGTTTTGAGCATATGACCTGGCAACGTGGCCAGAGGAGCTACATCTTCAGGGACCATGgtacgtgtcatccaccccagtgagcgggaatttaggagaatgggtttcat Alignment from GeneWise TACCTCTTGTGTCCAAGATGTGCCCGAGCGATGTGTACCGTGTGTGGAAGCGGGGTGAGAGTCTGCGGGTGGACACTAGTCTCTTGGGCTTTGAGCACATGACCTGGCAGCGTGGCCGAAGGAGCTTCATCTTCAGGGGTCAGG atgtattttggtgggatcagatacccaatctgtgctctcctgtttcttagTACCTCTCGTGTCCAAGATGTGCACAAGTGATGTGTACTGTGTGTGGAAACGTGGTGAAAGCCTACGAGTGGATGCTAGTCTCCTTGGTTTTGAGCATATGACCTGGCAACGTGGCCAGAGGAGCTACATCTTCAGGGACCATGgtacgtgtcatccaccccagtgagcgggaatttaggagaatgggtttcat #### Ankrd1_ID7095_8 --> 0 - 0 Original Alignment GAAGGAGACACCCCACTGCATGATGCTGTGAGGCTGAACCGCTATAAGATGATTCGACTCTTGATGACCTTCGGTGCGGACCTCAAGGTCAAGAACTGT tctttgaggtctccaggtcccctggtttcatatttctcatttttttatagGAGGAGGCCACACCATTGCATGACGCAGTGAGATTAAACCGTTACAAGATGATT---CTCTTGATGACATTTGGTGCAGACCTGAAGGTGAAGAACTGTgtaagccagcagatcaataagggtacaattattttatcccaaagtgttac Alignment from CESAR GAAGGAGACACCCCACTGCATGATGCTGTGAGGCTGAACCGCTATAAGATGATTCGACTCTTGATGACCTTCGGTGCGGACCTCAAGGTCAAGAACTGT tctttgaggtctccaggtcccctggtttcatatttctcatttttttatagGAGGAGGCCACACCATTGCATGACGCAGTGAGATTAAACCGTTACAAGATGATT---CTCTTGATGACATTTGGTGCAGACCTGAAGGTGAAGAACTGTgtaagccagcagatcaataagggtacaattattttatcccaaagtgttac Alignment from Spaln_aa2Genome GAAGGAGACACCCCACTGCATGATGCTGTGAGGCTGAACCGCTATAAGATGATTCGACTCTTGATGACCTTCGGTGCGGACCTCAAGGTCAAGAACTGT tctttgaggtctccaggtcccctggtttcatatttctcatttttttatagGAGGAGGCCACACCATTGCATGACGCAGTGAGATTAAACCGTTACAAGATGATTCTC---TTGATGACATTTGGTGCAGACCTGAAGGTGAAGAACTGTgtaagccagcagatcaataagggtacaattattttatcccaaagtgttac Alignment from Spaln_nt2Genome GAAGGAGACACCCCACTGCATGATGCTGTGAGGCTGAACCGCTATAAGATGATTCGACTCTTGATGACCTTCGGTGCGGACCTCAAGGTCAAGAACTGT tctttgaggtctccaggtcccctggtttcatatttctcatttttttatagGAGGAGGCCACACCATTGCATGACGCAGTGAGATTAAACCGTTACAAGATGATT---CTCTTGATGACATTTGGTGCAGACCTGAAGGTGAAGAACTGTgtaagccagcagatcaataagggtacaattattttatcccaaagtgttac Alignment from Pairagon GAAGGAGACACCCCACTGCATGATGCTGTGAGGCTGAACCGCTATAAGATGATTCGACTCTTGATGACCTTCGGTGCGGACCTCAAGGTCAAGAACTGT tctttgaggtctccaggtcccctggtttcatatttctcatttttttatagGAGGAGGCCACACCATTGCATGACGCAGTGAGATTAAACCGTTACAAGATGATT---CTCTTGATGACATTTGGTGCAGACCTGAAGGTGAAGAACTGTgtaagccagcagatcaataagggtacaattattttatcccaaagtgttac Alignment from Exonerate_protein2genome GGAGACACCCCACTGCATGATGCTGTGAGGCTGAACCGCTATAAGATGATTCGACTCTTGATGACCTTCGGTGCGGACCTCAAGGTCAAGAACTGT tctttgaggtctccaggtcccctggtttcatatttctcatttttttataggagGAGGCCACACCATTGCATGACGCAGTGAGATTAAACCGTTACAAGATGATT---CTCTTGATGACATTTGGTGCAGACCTGAAGGTGAAGAACTGTgtaagccagcagatcaataagggtacaattattttatcccaaagtgttac Alignment from Exonerate_coding2genome GGAGACACCCCACTGCATGATGCTGTGAGGCTGAACCGCTATAAGATGATTCGACTCTTGATGACCTTCGGTGCGGACCTCAAGGTCAAGAACTGT tctttgaggtctccaggtcccctggtttcatatttctcatttttttataggagGAGGCCACACCATTGCATGACGCAGTGAGATTAAACCGTTACAAGATGATT---CTCTTGATGACATTTGGTGCAGACCTGAAGGTGAAGAACTGTgtaagccagcagatcaataagggtacaattattttatcccaaagtgttac Alignment from GeneWise ------ACCCCACTGCATGATGCTGTGAGGCTGAACCGCTATAAGATGATTCGACTCTTGATGACCTTCGGTGCGGACCTCAAGGTCAAGAACTGT tctttgaggtctccaggtcccctggtttcatatttctcatttttttataggagGAGGCCACACCATTGCATGACGCAGTGAGATTAAACCGTTACAAGATGATT---CTCTTGATGACATTTGGTGCAGACCTGAAGGTGAAGAACTGTgtaagccagcagatcaataagggtacaattattttatcccaaagtgttac #### Ankrd1_ID7097_6 --> 0 - 0 Original Alignment CTTGAATCCACAGCCATCCACTGGGCATGTCGTGGAGGAAACGCAGATGTCCTGAAACTGTTGCTGAACAAAGGAGCCAAAATCAGTGCCAGAGACAAG catagtgctacattccatcatctctctatttttggccatttgttttgcagCTGGAGTCCTCAGCTATCCATTGGGCATGTCGTGGAGAAAATGCTGATGTCCTAAAACTACTGCTGAACAAAGGAGCCAAAATAAGTGCCAGAGACAAGgtgagtttttgtcccccaatacacctcccttccttattgaggatatttta Alignment from CESAR CTTGAATCCACAGCCATCCACTGGGCATGTCGTGGAGGAAACGCAGATGTCCTGAAACTGTTGCTGAACAAAGGAGCCAAAATCAGTGCCAGAGACAAG catagtgctacattccatcatctctctatttttggccatttgttttgcagCTGGAGTCCTCAGCTATCCATTGGGCATGTCGTGGAGAAAATGCTGATGTCCTAAAACTACTGCTGAACAAAGGAGCCAAAATAAGTGCCAGAGACAAGgtgagtttttgtcccccaatacacctcccttccttattgaggatatttta Alignment from Spaln_aa2Genome CTTGAATCCACAGCCATCCACTGGGCATGTCGTGGAGGAAACGCAGATGTCCTGAAACTGTTGCTGAACAAAGGAGCCAAAATCAGTGCCAGAGACAAG catagtgctacattccatcatctctctatttttggccatttgttttgcagCTGGAGTCCTCAGCTATCCATTGGGCATGTCGTGGAGAAAATGCTGATGTCCTAAAACTACTGCTGAACAAAGGAGCCAAAATAAGTGCCAGAGACAAGgtgagtttttgtcccccaatacacctcccttccttattgaggatatttta Alignment from Spaln_nt2Genome CTTGAATCCACAGCCATCCACTGGGCATGTCGTGGAGGAAACGCAGATGTCCTGAAACTGTTGCTGAACAAAGGAGCCAAAATCAGTGCCAGAGACAAG catagtgctacattccatcatctctctatttttggccatttgttttgcagCTGGAGTCCTCAGCTATCCATTGGGCATGTCGTGGAGAAAATGCTGATGTCCTAAAACTACTGCTGAACAAAGGAGCCAAAATAAGTGCCAGAGACAAGgtgagtttttgtcccccaatacacctcccttccttattgaggatatttta Alignment from Pairagon CTTGAATCCACAGCCATCCACTGGGCATGTCGTGGAGGAAACGCAGATGTCCTGAAACTGTTGCTGAACAAAGGAGCCAAAATCAGTGCCAGAGACAAG catagtgctacattccatcatctctctatttttggccatttgttttgcagCTGGAGTCCTCAGCTATCCATTGGGCATGTCGTGGAGAAAATGCTGATGTCCTAAAACTACTGCTGAACAAAGGAGCCAAAATAAGTGCCAGAGACAAGgtgagtttttgtcccccaatacacctcccttccttattgaggatatttta Alignment from Exonerate_protein2genome CTTGAATCCACAGCCATCCACTGGGCATGTCGTGGAGGAAACGCAGATGTCCTGAAACTGTTGCTGAACAAAGGAGCCAAAATCAGTGCCAGAGACAAG catagtgctacattccatcatctctctatttttggccatttgttttgcagCTGGAGTCCTCAGCTATCCATTGGGCATGTCGTGGAGAAAATGCTGATGTCCTAAAACTACTGCTGAACAAAGGAGCCAAAATAAGTGCCAGAGACAAGgtgagtttttgtcccccaatacacctcccttccttattgaggatatttta Alignment from Exonerate_coding2genome CTTGAATCCACAGCCATCCACTGGGCATGTCGTGGAGGAAACGCAGATGTCCTGAAACTGTTGCTGAACAAAGGAGCCAAAATCAGTGCCAGAGACAAG catagtgctacattccatcatctctctatttttggccatttgttttgcagCTGGAGTCCTCAGCTATCCATTGGGCATGTCGTGGAGAAAATGCTGATGTCCTAAAACTACTGCTGAACAAAGGAGCCAAAATAAGTGCCAGAGACAAGgtgagtttttgtcccccaatacacctcccttccttattgaggatatttta Alignment from GeneWise CTTGAATCCACAGCCATCCACTGGGCATGTCGTGGAGGAAACGCAGATGTCCTGAAACTGTTGCTGAACAAAGGAGCCAAAATCAGTGCCAGAGACAAG catagtgctacattccatcatctctctatttttggccatttgttttgcagCTGGAGTCCTCAGCTATCCATTGGGCATGTCGTGGAGAAAATGCTGATGTCCTAAAACTACTGCTGAACAAAGGAGCCAAAATAAGTGCCAGAGACAAGgtgagtttttgtcccccaatacacctcccttccttattgaggatatttta #### Ankrd1_ID7100_5 --> 0 - 0 Original Alignment TATAAACGGACGGCACTCCACCGAGCATGCTTAGAAGGACACTTGGCGATCGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTCCGAGATATG tgcaaaacttattattaaagtgctattgtcaccctcaccgacacctccagTATAAACGGACAGCACTCCACCGGGCATGCTTAGAAGGACACTTGGCAATTGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTCCGAGATATGgtaagaattgcattagaatgcaacaacgtaggtggctcttctgcgaagca Alignment from CESAR TATAAACGGACGGCACTCCACCGAGCATGCTTAGAAGGACACTTGGCGATCGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTCCGAGATATG tgcaaaacttattattaaagtgctattgtcaccctcaccgacacctccagTATAAACGGACAGCACTCCACCGGGCATGCTTAGAAGGACACTTGGCAATTGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTCCGAGATATGgtaagaattgcattagaatgcaacaacgtaggtggctcttctgcgaagca Alignment from Spaln_aa2Genome TATAAACGGACGGCACTCCACCGAGCATGCTTAGAAGGACACTTGGCGATCGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTCCGAGATATG tgcaaaacttattattaaagtgctattgtcaccctcaccgacacctccagTATAAACGGACAGCACTCCACCGGGCATGCTTAGAAGGACACTTGGCAATTGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTCCGAGATATGgtaagaattgcattagaatgcaacaacgtaggtggctcttctgcgaagca Alignment from Spaln_nt2Genome TATAAACGGACGGCACTCCACCGAGCATGCTTAGAAGGACACTTGGCGATCGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTCCGAGATATG tgcaaaacttattattaaagtgctattgtcaccctcaccgacacctccagTATAAACGGACAGCACTCCACCGGGCATGCTTAGAAGGACACTTGGCAATTGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTCCGAGATATGgtaagaattgcattagaatgcaacaacgtaggtggctcttctgcgaagca Alignment from Pairagon TATAAACGGACGGCACTCCACCGAGCATGCTTAGAAGGACACTTGGCGATCGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTCCGAGATATG tgcaaaacttattattaaagtgctattgtcaccctcaccgacacctccagTATAAACGGACAGCACTCCACCGGGCATGCTTAGAAGGACACTTGGCAATTGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTCCGAGATATGgtaagaattgcattagaatgcaacaacgtaggtggctcttctgcgaagca Alignment from Exonerate_protein2genome TATAAACGGACGGCACTCCACCGAGCATGCTTAGAAGGACACTTGGCGATCGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTCCGAGATATG tgcaaaacttattattaaagtgctattgtcaccctcaccgacacctccagTATAAACGGACAGCACTCCACCGGGCATGCTTAGAAGGACACTTGGCAATTGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTCCGAGATATGgtaagaattgcattagaatgcaacaacgtaggtggctcttctgcgaagca Alignment from Exonerate_coding2genome TATAAACGGACGGCACTCCACCGAGCATGCTTAGAAGGACACTTGGCGATCGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTCCGAGATATG tgcaaaacttattattaaagtgctattgtcaccctcaccgacacctccagTATAAACGGACAGCACTCCACCGGGCATGCTTAGAAGGACACTTGGCAATTGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTCCGAGATATGgtaagaattgcattagaatgcaacaacgtaggtggctcttctgcgaagca Alignment from GeneWise TATAAACGGACGGCACTCCACCGAGCATGCTTAGAAGGACACTTGGCGATCGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTCCGAGATATG tgcaaaacttattattaaagtgctattgtcaccctcaccgacacctccagTATAAACGGACAGCACTCCACCGGGCATGCTTAGAAGGACACTTGGCAATTGTGGAGAAGTTAATGGAGGCTGGAGCCCAGATTGAATTCCGAGATATGgtaagaattgcattagaatgcaacaacgtaggtggctcttctgcgaagca #### Ankrd2_ID8370_4 --> 0 - 0 Original Alignment ACCGGCCCTGTGAATGAGGAGACA---TTCCTGAAAGCTGCAGTGGAGGGGAAAATGAAAGTCATTGACAAGTACCTGGCGGACGGAGGTTCAGCGGACACCTGTGATGAG agatgtggatggggacaaagtcctgaagttctggttatgaaaacccacagACTGGTGCTGTAAATGAGGCAATGATATTCCTAATAGCTGCT------GGGAAAATGAAAGTTATTGATAAATAT------GATGGTGGGTCAGCTGACACCTGTGATGAGgtgagctcctcctcatattaagtcacctcctcttttgtactaagatttct Alignment from CESAR ACCGGCCCTGTGAATGAGGAGACA---TTCCTGAAAGCTGCAGTGGAGGGGAAAATGAAAGTCATTGACAAGTACCTGGCGGACGGAGGTTCAGCGGACACCTGTGATGAG agatgtggatggggacaaagtcctgaagttctggttatgaaaacccacagACTGGTGCTGTAAATGAGGCAATGATATTCCTAATAGCTGCT------GGGAAAATGAAAGTTATTGATAAATAT------GATGGTGGGTCAGCTGACACCTGTGATGAGgtgagctcctcctcatattaagtcacctcctcttttgtactaagatttct Alignment from Spaln_aa2Genome ACCGGCCCTGTGAATGAGGAGACATTCCTGAAAGCTGCAGTGGAGGGGAAAATGAAAGTCATTGACAAGTACCTGGCGGACGGAGGTTCAGCGGACACCTGTGATGAG agatgtggatggggacaaagtcctgaagttctggttatgaaaacccacagACTGGTGCTGTAAATGAGGCAATGATATTCCTAATAGCTGCT---GGGAAAATGAAAGTTATTGATAAATAT------GATGGTGGGTCAGCTGACACCTGTGATGAGgtgagctcctcctcatattaagtcacctcctcttttgtactaagatttct Alignment from Spaln_nt2Genome ACCGGCCCTGTGAATGAGGA---GACATTCCTGAAAGCTGCAGTGGAGGGGAAAATGAAAGTCATTGACAAGTACCTGGCGGACGGAGGTTCAGCGGACACCTGTGATGAG agatgtggatggggacaaagtcctgaagttctggttatgaaaacccacagACTGGTGCTGTAAATGAGGCAATGATATTCCTAATAGCTGC------TGGGAAAATGAAAGTTATTGATAAATA------TGATGGTGGGTCAGCTGACACCTGTGATGAGgtgagctcctcctcatattaagtcacctcctcttttgtactaagatttct Alignment from Pairagon ACCGGCCCTGTGAATGAGGA---GACATTCCTGAAAGCTGCAGTGGAGGGGAAAATGAAAGTCATTGACAAGTACCTGGCGGACGGAGGTTCAGCGGACACCTGTGATGAG agatgtggatggggacaaagtcctgaagttctggttatgaaaacccacagACTGGTGCTGTAAATGAGGCAATGATATTCCTAATAGCTGC------TGGGAAAATGAAAGTTATTGATAAATAT------GATGGTGGGTCAGCTGACACCTGTGATGAGgtgagctcctcctcatattaagtcacctcctcttttgtactaagatttct Alignment from Exonerate_protein2genome ACCGGCCCTGTGAATGAGGAGACATTCCTGAAAGCTGCAGTGGAGGGGAAAATGAAAGTCATTGACAAGTACCTGGCGGACGGAGGTTCAGCGGACACCTGTGATGAG agatgtggatggggacaaagtcctgaagttctggttatgaaaacccacagACTGGTGCTGTAAATGAGGCAATGATATTCCTAATAGCTGCT---GGGAAAATGAAAGTTATTGATAAATAT------GATGGTGGGTCAGCTGACACCTGTGATGAGgtgagctcctcctcatattaagtcacctcctcttttgtactaagatttct Alignment from Exonerate_coding2genome ACCGGCCCTGTGAATGAGGAGACATTCCTGAAAGCTGCAGTGGAGGGGAAAATGAAAGTCATTGACAAGTACCTGGCGGACGGAGGTTCAGCGGACACCTGTGATGAG agatgtggatggggacaaagtcctgaagttctggttatgaaaacccacagACTGGTGCTGTAAATGAGGCAATGATATTCCTAATAGCTGCT---GGGAAAATGAAAGTTATTGATAAATAT------GATGGTGGGTCAGCTGACACCTGTGATGAGgtgagctcctcctcatattaagtcacctcctcttttgtactaagatttct Alignment from GeneWise ACCGGCCCTGTGAATGAGGAGACA---TTCCTGAAAGCTGCAGTGGAGGGGAAAATGAAAGTCATTGACAAGTACCTGGCGGACGGAGGTTCAGCGGACACCTGTGATGAG agatgtggatggggacaaagtcctgaagttctggttatgaaaacccacagACTGGTGCTGTAAATGAGGCAATGATATTCCTAATAGCTGCT------GGGAAAATGAAAGTTATTGATAAATAT------GATGGTGGGTCAGCTGACACCTGTGATGAGgtgagctcctcctcatattaagtcacctcctcttttgtactaagatttct #### Ankrd2_ID8372_6 --> 0 - 0 Original Alignment CTGGACTGCACAGCCATGCACTGGGCCTGCCGTGGGGGCCACCTGGAGGTGGTGAGACTCCTGCAAAGCCGGGGGGCCGACACCAACGTGAGAGACAAG atgttatgactcccttaaactcttacatgaactacccttactcaccacagCTGGATTGCACAGCTATGCACTGGGCTTGTCATGGGGGGCACCTAGAGGTGGTGAGACTCTTGGAAAGTCGGGGGGCTGATGCCAATGTGCGAGACAAAgtgagtacttctagttttgattggatgcgtaaatcctctggtatgtgccc Alignment from CESAR CTGGACTGCACAGCCATGCACTGGGCCTGCCGTGGGGGCCACCTGGAGGTGGTGAGACTCCTGCAAAGCCGGGGGGCCGACACCAACGTGAGAGACAAG atgttatgactcccttaaactcttacatgaactacccttactcaccacagCTGGATTGCACAGCTATGCACTGGGCTTGTCATGGGGGGCACCTAGAGGTGGTGAGACTCTTGGAAAGTCGGGGGGCTGATGCCAATGTGCGAGACAAAgtgagtacttctagttttgattggatgcgtaaatcctctggtatgtgccc Alignment from Spaln_aa2Genome CTGGACTGCACAGCCATGCACTGGGCCTGCCGTGGGGGCCACCTGGAGGTGGTGAGACTCCTGCAAAGCCGGGGGGCCGACACCAACGTGAGAGACAAG atgttatgactcccttaaactcttacatgaactacccttactcaccacagCTGGATTGCACAGCTATGCACTGGGCTTGTCATGGGGGGCACCTAGAGGTGGTGAGACTCTTGGAAAGTCGGGGGGCTGATGCCAATGTGCGAGACAAAgtgagtacttctagttttgattggatgcgtaaatcctctggtatgtgccc Alignment from Spaln_nt2Genome CTGGACTGCACAGCCATGCACTGGGCCTGCCGTGGGGGCCACCTGGAGGTGGTGAGACTCCTGCAAAGCCGGGGGGCCGACACCAACGTGAGAGACAAG atgttatgactcccttaaactcttacatgaactacccttactcaccacagCTGGATTGCACAGCTATGCACTGGGCTTGTCATGGGGGGCACCTAGAGGTGGTGAGACTCTTGGAAAGTCGGGGGGCTGATGCCAATGTGCGAGACAAAgtgagtacttctagttttgattggatgcgtaaatcctctggtatgtgccc Alignment from Pairagon CTGGACTGCACAGCCATGCACTGGGCCTGCCGTGGGGGCCACCTGGAGGTGGTGAGACTCCTGCAAAGCCGGGGGGCCGACACCAACGTGAGAGACAAG atgttatgactcccttaaactcttacatgaactacccttactcaccacagCTGGATTGCACAGCTATGCACTGGGCTTGTCATGGGGGGCACCTAGAGGTGGTGAGACTCTTGGAAAGTCGGGGGGCTGATGCCAATGTGCGAGACAAAgtgagtacttctagttttgattggatgcgtaaatcctctggtatgtgccc Alignment from Exonerate_protein2genome CTGGACTGCACAGCCATGCACTGGGCCTGCCGTGGGGGCCACCTGGAGGTGGTGAGACTCCTGCAAAGCCGGGGGGCCGACACCAACGTGAGAGACAAG atgttatgactcccttaaactcttacatgaactacccttactcaccacagCTGGATTGCACAGCTATGCACTGGGCTTGTCATGGGGGGCACCTAGAGGTGGTGAGACTCTTGGAAAGTCGGGGGGCTGATGCCAATGTGCGAGACAAAgtgagtacttctagttttgattggatgcgtaaatcctctggtatgtgccc Alignment from Exonerate_coding2genome CTGGACTGCACAGCCATGCACTGGGCCTGCCGTGGGGGCCACCTGGAGGTGGTGAGACTCCTGCAAAGCCGGGGGGCCGACACCAACGTGAGAGACAAG atgttatgactcccttaaactcttacatgaactacccttactcaccacagCTGGATTGCACAGCTATGCACTGGGCTTGTCATGGGGGGCACCTAGAGGTGGTGAGACTCTTGGAAAGTCGGGGGGCTGATGCCAATGTGCGAGACAAAgtgagtacttctagttttgattggatgcgtaaatcctctggtatgtgccc Alignment from GeneWise CTGGACTGCACAGCCATGCACTGGGCCTGCCGTGGGGGCCACCTGGAGGTGGTGAGACTCCTGCAAAGCCGGGGGGCCGACACCAACGTGAGAGACAAG atgttatgactcccttaaactcttacatgaactacccttactcaccacagCTGGATTGCACAGCTATGCACTGGGCTTGTCATGGGGGGCACCTAGAGGTGGTGAGACTCTTGGAAAGTCGGGGGGCTGATGCCAATGTGCGAGACAAAgtgagtacttctagttttgattggatgcgtaaatcctctggtatgtgccc #### Anxa1_ID4766_4 --> 0 - 0 Original Alignment CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG GGACT aggctggaagaatgatacacacctaaatttctctgtttttcctattttagCCCCTAGATGAAGTATTGAGGAAAGCTCTTACAGGCCATCTTGAGGAGGTTGTTTTGGCTATGCTCAAAACTCCAGCACAATTT---GCTGATGAACTACATGGTGCCATGAAGgtgaggactggtaaaaaaaattttctccatttttgtcttggtcagGGACT Alignment from CESAR CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG GGACT aggctggaagaatgatacacacctaaatttctctgtttttcctattttagCCCCTAGATGAAGTATTGAGGAAAGCTCTTACAGGCCATCTTGAGGAGGTTGTTTTGGCTATGCTCAAAACTCCAGCACAATTT---GCTGATGAACTACATGGTGCCATGAAGgtgaggactggtaaaaaaaatttatttgtaaccattttctcccagGGACT Alignment from Spaln_aa2Genome CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG GGACT aggctggaagaatgatacacacctaaatttctctgtttttcctattttagCCCCTAGATGAAGTATTGAGGAAAGCTCTTACAGGCCATCTTGAGGAGGTTGTTTTGGCTATGCTCAAAACTCCAGCACAATTT---GCTGATGAACTACATGGTGCCATGAAGgtgaggactggtaaaaaaaattttctccatttttgtcttggtcagGGACT Alignment from Spaln_nt2Genome CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG GGACT aggctggaagaatgatacacacctaaatttctctgtttttcctattttagCCCCTAGATGAAGTATTGAGGAAAGCTCTTACAGGCCATCTTGAGGAGGTTGTTTTGGCTATGCTCAAAACTCCAGCACAATT---TGCTGATGAACTACATGGTGCCATGAAGgtgaggactggtaaaaaaaattttctccatttttgtcttggtcagGGACT Alignment from Pairagon CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG GGACT aggctggaagaatgatacacacctaaatttctctgtttttcctattttagCCCCTAGATGAAGTATTGAGGAAAGCTCTTACAGGCCATCTTGAGGAGGTTGTTTTGGCTATGCTCAAAACTCCAGCACAATTTGCT---GATGAACTACATGGTGCCATGAAGgtgaggactggtaaaaaaaattttctccatttttgtcttggtcagGGACT Alignment from Exonerate_protein2genome CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG GGACT aggctggaagaatgatacacacctaaatttctctgtttttcctattttagCCCCTAGATGAAGTATTGAGGAAAGCTCTTACAGGCCATCTTGAGGAGGTTGTTTTGGCTATGCTCAAAACTCCAGCACAATTT---GCTGATGAACTACATGGTGCCATGAAGgtgaggactggtaaaaaaaattttctccatttttgtcttggtcagGGACT Alignment from Exonerate_coding2genome CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG GGACT aggctggaagaatgatacacacctaaatttctctgtttttcctattttagCCCCTAGATGAAGTATTGAGGAAAGCTCTTACAGGCCATCTTGAGGAGGTTGTTTTGGCTATGCTCAAAACTCCAGCACAATTT---GCTGATGAACTACATGGTGCCATGAAGgtgaggactggtaaaaaaaattttctccatttttgtcttggtcagGGACT Alignment from GeneWise CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG---------------------------------------------GGACT aggctggaagaatgatacacacctaaatttctctgtttttcctattttagCCCCTAGATGAAGTATTGAGGAAAGCTCTTACAGGCCATCTTGAGGAGGTTGTTTTGGCTATGCTCAAAACTCCAGCACAATTT---GCTGATGAACTACATGGTGCCATGAAGGTGAGGACTGGTAAAAAAAATTTTCTCCATTTTTGTCTTGGTCAGGGACT #### Apba1_ID5230_3 --> 0 - 1 Original Alignment TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAg aataattgagctatcccacattcactcattgtttccttccttccctgcagTCAAGAAAGAGCTTGGCTTCATTCCCAACCTACGTTGAAggtaaggttggaagaggtgagccagaagatatgaacaggagttgtttatag Alignment from CESAR TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAg aataattgagctatcccacattcactcattgtttccttccttccctgcagTCAAGAAAGAGCTTGGCTTCATTCCCAACCTACGTTGAAggtaaggttggaagaggtgagccagaagatatgaacaggagttgtttatag Alignment from Spaln_aa2Genome TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAG aataattgagctatcccacattcactcattgtttccttccttccctgcagTCAAGAAAGAGCTTGGCTTCATTCCCAACCTACGTTGAAGgtaaggttggaagaggtgagccagaagatatgaacaggagttgtttatag Alignment from Spaln_nt2Genome TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAG aataattgagctatcccacattcactcattgtttccttccttccctgcagTCAAGAAAGAGCTTGGCTTCATTCCCAACCTACGTTGAAGgtaaggttggaagaggtgagccagaagatatgaacaggagttgtttatag Alignment from Pairagon TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAG aataattgagctatcccacattcactcattgtttccttccttccctgcagTCAAGAAAGAGCTTGGCTTCATTCCCAACCTACGTTGAAGgtaaggttggaagaggtgagccagaagatatgaacaggagttgtttatag Alignment from Exonerate_protein2genome TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAG aataattgagctatcccacattcactcattgtttccttccttccctgcagTCAAGAAAGAGCTTGGCTTCATTCCCAACCTACGTTGAAGgtaaggttggaagaggtgagccagaagatatgaacaggagttgtttatag Alignment from Exonerate_coding2genome TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAG aataattgagctatcccacattcactcattgtttccttccttccctgcagTCAAGAAAGAGCTTGGCTTCATTCCCAACCTACGTTGAAGgtaaggttggaagaggtgagccagaagatatgaacaggagttgtttatag Alignment from GeneWise TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAG aataattgagctatcccacattcactcattgtttccttccttccctgcagTCAAGAAAGAGCTTGGCTTCATTCCCAACCTACGTTGAAGgtaaggttggaagaggtgagccagaagatatgaacaggagttgtttatag #### Arhgap19_ID8263_10 --> 0 - 0 Original Alignment CGCAAAGTCCTGGGCAGTCAGATGACTTCAGAAAAGAAAAACAGTTCTCCTGCTCCAGAGTCTGTGGCCATGGGGGAACTGAAGAAAGCCAGCAAAGAAAATATGAACCTG ttctttgtcatcccacgaaacaaaatcttgtgttctgcttgtttttctagCGTGAGGTCCTGGACAGCCAGATGACATCAGAAAAGAAAAACAGTTCCCCTGCTCCAGAGTCAGTAGCCATGGGGGAGCTA---AAAGACAGCAAAGAAAACATAAACTTGgtaggagagccaatgttgtctaggttctttgtatgaattagttgcttggt Alignment from CESAR CGCAAAGTCCTGGGCAGTCAGATGACTTCAGAAAAGAAAAACAGTTCTCCTGCTCCAGAGTCTGTGGCCATGGGGGAACTGAAGAAAGCCAGCAAAGAAAATATGAACCTG ttctttgtcatcccacgaaacaaaatcttgtgttctgcttgtttttctagCGTGAGGTCCTGGACAGCCAGATGACATCAGAAAAGAAAAACAGTTCCCCTGCTCCAGAGTCAGTAGCCATGGGGGAGCTA---AAAGACAGCAAAGAAAACATAAACTTGgtaggagagccaatgttgtctaggttctttgtatgaattagttgcttggt Alignment from Spaln_aa2Genome CGCAAAGTCCTGGGCAGTCAGATGACTTCAGAAAAGAAAAACAGTTCTCCTGCTCCAGAGTCTGTGGCCATGGGGGAACTGAAGAAAGCCAGCAAAGAAAATATGAACCTG ttctttgtcatcccacgaaacaaaatcttgtgttctgcttgtttttctagCGTGAGGTCCTGGACAGCCAGATGACATCAGAAAAGAAAAACAGTTCCCCTGCTCCAGAGTCAGTAGCCATGGGGGAGCTA---AAAGACAGCAAAGAAAACATAAACTTGgtaggagagccaatgttgtctaggttctttgtatgaattagttgcttggt Alignment from Spaln_nt2Genome CGCAAAGTCCTGGGCAGTCAGATGACTTCAGAAAAGAAAAACAGTTCTCCTGCTCCAGAGTCTGTGGCCATGGGGGAACTGAAGAAAGCCAGCAAAGAAAATATGAACCTG ttctttgtcatcccacgaaacaaaatcttgtgttctgcttgtttttctagCGTGAGGTCCTGGACAGCCAGATGACATCAGAAAAGAAAAACAGTTCCCCTGCTCCAGAGTCAGTAGCCATGGGGGAGCT---AAAAGACAGCAAAGAAAACATAAACTTGgtaggagagccaatgttgtctaggttctttgtatgaattagttgcttggt Alignment from Pairagon CGCAAAGTCCTGGGCAGTCAGATGACTTCAGAAAAGAAAAACAGTTCTCCTGCTCCAGAGTCTGTGGCCATGGGGGAACTGAAGAAAGCCAGCAAAGAAAATATGAACCTG ttctttgtcatcccacgaaacaaaatcttgtgttctgcttgtttttctagCGTGAGGTCCTGGACAGCCAGATGACATCAGAAAAGAAAAACAGTTCCCCTGCTCCAGAGTCAGTAGCCATGGGGGAGCT---AAAAGACAGCAAAGAAAACATAAACTTGgtaggagagccaatgttgtctaggttctttgtatgaattagttgcttggt Alignment from Exonerate_protein2genome CGCAAAGTCCTGGGCAGTCAGATGACTTCAGAAAAGAAAAACAGTTCTCCTGCTCCAGAGTCTGTGGCCATGGGGGAACTGAAGAAAGCCAGCAAAGAAAATATGAACCTG ttctttgtcatcccacgaaacaaaatcttgtgttctgcttgtttttctagCGTGAGGTCCTGGACAGCCAGATGACATCAGAAAAGAAAAACAGTTCCCCTGCTCCAGAGTCAGTAGCCATGGGGGAGCTAAAAGAC---AGCAAAGAAAACATAAACTTGgtaggagagccaatgttgtctaggttctttgtatgaattagttgcttggt Alignment from Exonerate_coding2genome CGCAAAGTCCTGGGCAGTCAGATGACTTCAGAAAAGAAAAACAGTTCTCCTGCTCCAGAGTCTGTGGCCATGGGGGAACTGAAGAAAGCCAGCAAAGAAAATATGAACCTG ttctttgtcatcccacgaaacaaaatcttgtgttctgcttgtttttctagCGTGAGGTCCTGGACAGCCAGATGACATCAGAAAAGAAAAACAGTTCCCCTGCTCCAGAGTCAGTAGCCATGGGGGAGCTAAAAGAC---AGCAAAGAAAACATAAACTTGgtaggagagccaatgttgtctaggttctttgtatgaattagttgcttggt Alignment from GeneWise CGCAAAGTCCTGGGCAGTCAGATGACTTCAGAAAAGAAAAACAGTTCTCCTGCTCCAGAGTCTGTGGCCATGGGGGAACTGAAGAAAGCCAGCAAAGAAAATATGAACCTG ttctttgtcatcccacgaaacaaaatcttgtgttctgcttgtttttctagCGTGAGGTCCTGGACAGCCAGATGACATCAGAAAAGAAAAACAGTTCCCCTGCTCCAGAGTCAGTAGCCATGGGGGAGCTAAAAGAC---AGCAAAGAAAACATAAACTTGgtaggagagccaatgttgtctaggttctttgtatgaattagttgcttggt #### Arl2_ID1477_2 --> 1 - 2 Original Alignment tGGCTTGGACAACGCTGGCAAAACAACCATCCTCAAGAAGTTCAATGGAGAAGACGTGGACACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGCgg gtggtaatgccatagatcttagagacctcccttttccttttaattctcagtGGTTTAGATAAGGCTACCAAAACAACCATTCTCAAAAAGTTTAATGGAGAGGATGTGGAAACCATCTCTTTGACACTAGGGATCAACATTAAA---CTGGAGCACCGTgggtgggtagggcactgactctgaggtcatggtcatggtgagataaaccatt Alignment from CESAR tGGCTTGGACAACGCTGGCAAAACAACCATCCTCAAGAAGTTCAATGGAGAAGACGTGGACACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGCgg gtggtaatgccatagatcttagagacctcccttttccttttaattctcagtGGTTTAGATAAGGCTACCAAAACAACCATTCTCAAAAAGTTTAATGGAGAGGATGTGGAAACCATCTCTTTGACACTAGGGATCAACATTAAA---CTGGAGCACCGTgggtgggtagggcactgactctgaggtcatggtcatggtgagatccttgctc Alignment from Spaln_aa2Genome TGGCTTGGACAACGCTGGCAAAACAACCATCCTCAAGAAGTTCAATGGAGAAGACGTGGACACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGCGG gtggtaatgccatagatcttagagacctcccttttccttttaattctcagTGGTTTAGATAAGGCTACCAAAACAACCATTCTCAAAAAGTTTAATGGAGAGGATGTGGAAACCATCTCTTTGACACTAGGGATCAACATTAAA---CTGGAGCACCGTGGgtgggtagggcactgactctgaggtcatggtcatggtgagataaaccatt Alignment from Spaln_nt2Genome TGGCTTGGACAACGCTGGCAAAACAACCATCCTCAAGAAGTTCAATGGAGAAGACGTGGACACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGCGG gtggtaatgccatagatcttagagacctcccttttccttttaattctcagTGGTTTAGATAAGGCTACCAAAACAACCATTCTCAAAAAGTTTAATGGAGAGGATGTGGAAACCATCTCTTTGACACTAGGGATCAACATTAA---ACTGGAGCACCGTGGgtgggtagggcactgactctgaggtcatggtcatggtgagataaaccatt Alignment from Pairagon TGGCTTGGACAACGCTGGCAAAACAACCATCCTCAAGAAGTTCAATGGAGAAGACGTGGACACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGCGG gtggtaatgccatagatcttagagacctcccttttccttttaattctcagTGGTTTAGATAAGGCTACCAAAACAACCATTCTCAAAAAGTTTAATGGAGAGGATGTGGAAACCATCTCTTTGACACTAGGGATCAACATTAAA---CTGGAGCACCGTGGgtgggtagggcactgactctgaggtcatggtcatggtgagataaaccatt Alignment from Exonerate_protein2genome TGGCTTGGACAACGCTGGCAAAACAACCATCCTCAAGAAGTTCAATGGAGAAGACGTGGACACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGCGG gtggtaatgccatagatcttagagacctcccttttccttttaattctcagTGGTTTAGATAAGGCTACCAAAACAACCATTCTCAAAAAGTTTAATGGAGAGGATGTGGAAACCATCTCTTTGACACTAGGGATCAACATTAAA---CTGGAGCACCGTGGgtgggtagggcactgactctgaggtcatggtcatggtgagataaaccatt Alignment from Exonerate_coding2genome TGGCTTGGACAACGCTGGCAAAACAACCATCCTCAAGAAGTTCAATGGAGAAGACGTGGACACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGCGG gtggtaatgccatagatcttagagacctcccttttccttttaattctcagTGGTTTAGATAAGGCTACCAAAACAACCATTCTCAAAAAGTTTAATGGAGAGGATGTGGAAACCATCTCTTTGACACTAGGGATCAACATTAAA---CTGGAGCACCGTGGgtgggtagggcactgactctgaggtcatggtcatggtgagataaaccatt Alignment from GeneWise TGGCTTGGACAACGCTGGCAAAACAACCATCCTCAAGAAGTTCAATGGAGAAGACGTGGACACCATCTCCCCGACACTGGGCTTCAACATCAAGACCCTGGAGCACCGCGG gtggtaatgccatagatcttagagacctcccttttccttttaattctcagTGGTTTAGATAAGGCTACCAAAACAACCATTCTCAAAAAGTTTAATGGAGAGGATGTGGAAACCATCTCTTTGACACTAGGGATCAACATTAAA---CTGGAGCACCGTGGgtgggtagggcactgactctgaggtcatggtcatggtgagataaaccatt #### Asah2_ID6657_17 --> 0 - 0 Original Alignment GACACAGTAGCCAACATGAGCAGTGGTCCCGAGCCTCCATTCTTCAAAAATCTAATAGCTTCACTTATTCCTAATATTGCGGATAGAGCACCAATTGGCAAACATTTTGGGGATGTCTTGCAGCCAGCAAAACCTGAATACAGAGTG ctgtgttgctcacagttaaagttcaactaattgcttgtttttctttatagGAGACAGTGTCCAACACCACTAGTGGCCCTGAGCCGCCATTCTTCAAAAATCTAATAGCATCACTCATACCTAACGTTGCAGATAGGGCACCAACTGGAAAACATTTTGGGGATGTACTGCAGCCAGCAAAGCCTGAGTACAGAGTGgttagcaccaaggaagggtctctggatgccttatgaccctgcacaagaaa Alignment from CESAR GACACAGTAGCCAACATGAGCAGTGGTCCCGAGCCTCCATTCTTCAAAAATCTAATAGCTTCACTTATTCCTAATATTGCGGATAGAGCACCAATTGGCAAACATTTTGGGGATGTCTTGCAGCCAGCAAAACCTGAATACAGAGTG ctgtgttgctcacagttaaagttcaactaattgcttgtttttctttatagGAGACAGTGTCCAACACCACTAGTGGCCCTGAGCCGCCATTCTTCAAAAATCTAATAGCATCACTCATACCTAACGTTGCAGATAGGGCACCAACTGGAAAACATTTTGGGGATGTACTGCAGCCAGCAAAGCCTGAGTACAGAGTGgttagcaccaaggaagggtctctggatgccttatgaccctgcacaagaaa Alignment from Spaln_aa2Genome GACACAGTAGCCAACATGAGCAGTGGTCCCGAGCCTCCATTCTTCAAAAATCTAATAGCTTCACTTATTCCTAATATTGCGGATAGAGCACCAATTGGCAAACATTTTGGGGATGTCTTGCAGCCAGCAAAACCTGAATACAGAGTG ctgtgttgctcacagttaaagttcaactaattgcttgtttttctttatagGAGACAGTGTCCAACACCACTAGTGGCCCTGAGCCGCCATTCTTCAAAAATCTAATAGCATCACTCATACCTAACGTTGCAGATAGGGCACCAACTGGAAAACATTTTGGGGATGTACTGCAGCCAGCAAAGCCTGAGTACAGAGTGgttagcaccaaggaagggtctctggatgccttatgaccctgcacaagaaa Alignment from Spaln_nt2Genome GACACAGTAGCCAACATGAGCAGTGGTCCCGAGCCTCCATTCTTCAAAAATCTAATAGCTTCACTTATTCCTAATATTGCGGATAGAGCACCAATTGGCAAACATTTTGGGGATGTCTTGCAGCCAGCAAAACCTGAATACAGAGTG ctgtgttgctcacagttaaagttcaactaattgcttgtttttctttatagGAGACAGTGTCCAACACCACTAGTGGCCCTGAGCCGCCATTCTTCAAAAATCTAATAGCATCACTCATACCTAACGTTGCAGATAGGGCACCAACTGGAAAACATTTTGGGGATGTACTGCAGCCAGCAAAGCCTGAGTACAGAGTGgttagcaccaaggaagggtctctggatgccttatgaccctgcacaagaaa Alignment from Pairagon GACACAGTAGCCAACATGAGCAGTGGTCCCGAGCCTCCATTCTTCAAAAATCTAATAGCTTCACTTATTCCTAATATTGCGGATAGAGCACCAATTGGCAAACATTTTGGGGATGTCTTGCAGCCAGCAAAACCTGAATACAGAGTG ctgtgttgctcacagttaaagttcaactaattgcttgtttttctttatagGAGACAGTGTCCAACACCACTAGTGGCCCTGAGCCGCCATTCTTCAAAAATCTAATAGCATCACTCATACCTAACGTTGCAGATAGGGCACCAACTGGAAAACATTTTGGGGATGTACTGCAGCCAGCAAAGCCTGAGTACAGAGTGgttagcaccaaggaagggtctctggatgccttatgaccctgcacaagaaa Alignment from Exonerate_protein2genome GACACAGTAGCCAACATGAGCAGTGGTCCCGAGCCTCCATTCTTCAAAAATCTAATAGCTTCACTTATTCCTAATATTGCGGATAGAGCACCAATTGGCAAACATTTTGGGGATGTCTTGCAGCCAGCAAAACCTGAATACAGAGTG ctgtgttgctcacagttaaagttcaactaattgcttgtttttctttatagGAGACAGTGTCCAACACCACTAGTGGCCCTGAGCCGCCATTCTTCAAAAATCTAATAGCATCACTCATACCTAACGTTGCAGATAGGGCACCAACTGGAAAACATTTTGGGGATGTACTGCAGCCAGCAAAGCCTGAGTACAGAGTGgttagcaccaaggaagggtctctggatgccttatgaccctgcacaagaaa Alignment from Exonerate_coding2genome GACACAGTAGCCAACATGAGCAGTGGTCCCGAGCCTCCATTCTTCAAAAATCTAATAGCTTCACTTATTCCTAATATTGCGGATAGAGCACCAATTGGCAAACATTTTGGGGATGTCTTGCAGCCAGCAAAACCTGAATACAGAGTG ctgtgttgctcacagttaaagttcaactaattgcttgtttttctttatagGAGACAGTGTCCAACACCACTAGTGGCCCTGAGCCGCCATTCTTCAAAAATCTAATAGCATCACTCATACCTAACGTTGCAGATAGGGCACCAACTGGAAAACATTTTGGGGATGTACTGCAGCCAGCAAAGCCTGAGTACAGAGTGgttagcaccaaggaagggtctctggatgccttatgaccctgcacaagaaa Alignment from GeneWise GACACAGTAGCCAACATGAGCAGTGGTCCCGAGCCTCCATTCTTCAAAAATCTAATAGCTTCACTTATTCCTAATATTGCGGATAGAGCACCAATTGGCAAACATTTTGGGGATGTCTTGCAGCCAGCAAAACCTGAATACAGAGTG ctgtgttgctcacagttaaagttcaactaattgcttgtttttctttatagGAGACAGTGTCCAACACCACTAGTGGCCCTGAGCCGCCATTCTTCAAAAATCTAATAGCATCACTCATACCTAACGTTGCAGATAGGGCACCAACTGGAAAACATTTTGGGGATGTACTGCAGCCAGCAAAGCCTGAGTACAGAGTGgttagcaccaaggaagggtctctggatgccttatgaccctgcacaagaaa #### Asah2_ID6662_12 --> 2 - 0 Original Alignment gaACTACGGAAGGGGATCCATTCTGGGACACTCTTCGGGACCAGCTCTTGGGAAAACCATCTGAAGAGATTGTAGAGTGTCAGAAACCCAAACCAATCCTGCTTCACAGTGGAGAG agtgtgggggcaaaagcatagtcacgctgcctctctgaacttttgtacaggaACTACGGTAGGGGATCCTTTTTGGGATACCCTCCGAGACCAGCTTCTGGGAAAAACTTCGGGAGAGATTGTGGACTGTCAAAAGCCTAAACCAATCCTGATTCACAGTGGGGAGgtaggcagccacatatgcttttgaccgatagaagtaggtggaaaacctgt Alignment from CESAR gaACTACGGAAGGGGATCCATTCTGGGACACTCTTCGGGACCAGCTCTTGGGAAAACCATCTGAAGAGATTGTAGAGTGTCAGAAACCCAAACCAATCCTGCTTCACAGTGGAGAG agtgtgggggcaaaagcatagtcacgctgcctctctgaacttttgtacaggaACTACGGTAGGGGATCCTTTTTGGGATACCCTCCGAGACCAGCTTCTGGGAAAAACTTCGGGAGAGATTGTGGACTGTCAAAAGCCTAAACCAATCCTGATTCACAGTGGGGAGgtaggcagccacatatgcttttgaccgatagaagtaggtggaaaacctgt Alignment from Spaln_aa2Genome GAACTACGGAAGGGGATCCATTCTGGGACACTCTTCGGGACCAGCTCTTGGGAAAACCATCTGAAGAGATTGTAGAGTGTCAGAAACCCAAACCAATCCTGCTTCACAGTGGAGAG agtgtgggggcaaaagcatagtcacgctgcctctctgaacttttgtacagGAACTACGGTAGGGGATCCTTTTTGGGATACCCTCCGAGACCAGCTTCTGGGAAAAACTTCGGGAGAGATTGTGGACTGTCAAAAGCCTAAACCAATCCTGATTCACAGTGGGGAGgtaggcagccacatatgcttttgaccgatagaagtaggtggaaaacctgt Alignment from Spaln_nt2Genome GAACTACGGAAGGGGATCCATTCTGGGACACTCTTCGGGACCAGCTCTTGGGAAAACCATCTGAAGAGATTGTAGAGTGTCAGAAACCCAAACCAATCCTGCTTCACAGTGGAGAG agtgtgggggcaaaagcatagtcacgctgcctctctgaacttttgtacagGAACTACGGTAGGGGATCCTTTTTGGGATACCCTCCGAGACCAGCTTCTGGGAAAAACTTCGGGAGAGATTGTGGACTGTCAAAAGCCTAAACCAATCCTGATTCACAGTGGGGAGgtaggcagccacatatgcttttgaccgatagaagtaggtggaaaacctgt Alignment from Pairagon GAACTACGGAAGGGGATCCATTCTGGGACACTCTTCGGGACCAGCTCTTGGGAAAACCATCTGAAGAGATTGTAGAGTGTCAGAAACCCAAACCAATCCTGCTTCACAGTGGAGAG agtgtgggggcaaaagcatagtcacgctgcctctctgaacttttgtacagGAACTACGGTAGGGGATCCTTTTTGGGATACCCTCCGAGACCAGCTTCTGGGAAAAACTTCGGGAGAGATTGTGGACTGTCAAAAGCCTAAACCAATCCTGATTCACAGTGGGGAGgtaggcagccacatatgcttttgaccgatagaagtaggtggaaaacctgt Alignment from Exonerate_protein2genome GAACTACGGAAGGGGATCCATTCTGGGACACTCTTCGGGACCAGCTCTTGGGAAAACCATCTGAAGAGATTGTAGAGTGTCAGAAACCCAAACCAATCCTGCTTCACAGTGGAGAG agtgtgggggcaaaagcatagtcacgctgcctctctgaacttttgtacagGAACTACGGTAGGGGATCCTTTTTGGGATACCCTCCGAGACCAGCTTCTGGGAAAAACTTCGGGAGAGATTGTGGACTGTCAAAAGCCTAAACCAATCCTGATTCACAGTGGGGAGgtaggcagccacatatgcttttgaccgatagaagtaggtggaaaacctgt Alignment from Exonerate_coding2genome GAACTACGGAAGGGGATCCATTCTGGGACACTCTTCGGGACCAGCTCTTGGGAAAACCATCTGAAGAGATTGTAGAGTGTCAGAAACCCAAACCAATCCTGCTTCACAGTGGAGAG agtgtgggggcaaaagcatagtcacgctgcctctctgaacttttgtacagGAACTACGGTAGGGGATCCTTTTTGGGATACCCTCCGAGACCAGCTTCTGGGAAAAACTTCGGGAGAGATTGTGGACTGTCAAAAGCCTAAACCAATCCTGATTCACAGTGGGGAGgtaggcagccacatatgcttttgaccgatagaagtaggtggaaaacctgt Alignment from GeneWise -------------------------------ACTACGGAAGGGGATCCATTCTGGGACACTCTTCGGGACCAGCTCTTGGGAAAACCATCTGAAGAGATTGTAGAGTGTCAGAAACCCAAACCAATCCTGCTTCACAGTGGAGAG agtgtgggggcaaaagcatagTCACGCTGCCTCTCTGAACTTTTGTACAGGAACTACGGTAGGGGATCCTTTTTGGGATACCCTCCGAGACCAGCTTCTGGGAAAAACTTCGGGAGAGATTGTGGACTGTCAAAAGCCTAAACCAATCCTGATTCACAGTGGGGAGgtaggcagccacatatgcttttgaccgatagaagtaggtggaaaacctgt #### Asah2_ID6663_11 --> 0 - 1 Original Alignment GTGAAGACGTGTAAACCTGCCCTGGGCTACAGTTTTGCCGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGg ttcttcatatgtcttgaaacacagaataatttttttttctttatgatcagGTGAAGACCTGTAAACCTGCCCTGGGCTACAGCTTTGTTGCAGGCACGACTGATGGAGTTTCAGGTCTTAATATCACTCAGggtaagttataatgtgtctgaaactccacagcccaaaatcttgggttgtca Alignment from CESAR GTGAAGACGTGTAAACCTGCCCTGGGCTACAGTTTTGCCGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGg ttcttcatatgtcttgaaacacagaataatttttttttctttatgatcagGTGAAGACCTGTAAACCTGCCCTGGGCTACAGCTTTGTTGCAGGCACGACTGATGGAGTTTCAGGTCTTAATATCACTCAGggtaagttataatgtgtctgaaactccacagcccaaaatcttgggttgtca Alignment from Spaln_aa2Genome GTGAAGACGTGTAAACCTGCCCTGGGCTACAGTTTTGCCGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGG ttcttcatatgtcttgaaacacagaataatttttttttctttatgatcagGTGAAGACCTGTAAACCTGCCCTGGGCTACAGCTTTGTTGCAGGCACGACTGATGGAGTTTCAGGTCTTAATATCACTCAGGgtaagttataatgtgtctgaaactccacagcccaaaatcttgggttgtca Alignment from Spaln_nt2Genome GTGAAGACGTGTAAACCTGCCCTGGGCTACAGTTTTGCCGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGG ttcttcatatgtcttgaaacacagaataatttttttttctttatgatcagGTGAAGACCTGTAAACCTGCCCTGGGCTACAGCTTTGTTGCAGGCACGACTGATGGAGTTTCAGGTCTTAATATCACTCAGGgtaagttataatgtgtctgaaactccacagcccaaaatcttgggttgtca Alignment from Pairagon GTGAAGACGTGTAAACCTGCCCTGGGCTACAGTTTTGCCGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGG ttcttcatatgtcttgaaacacagaataatttttttttctttatgatcagGTGAAGACCTGTAAACCTGCCCTGGGCTACAGCTTTGTTGCAGGCACGACTGATGGAGTTTCAGGTCTTAATATCACTCAGGgtaagttataatgtgtctgaaactccacagcccaaaatcttgggttgtca Alignment from Exonerate_protein2genome GTGAAGACGTGTAAACCTGCCCTGGGCTACAGTTTTGCCGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGG ttcttcatatgtcttgaaacacagaataatttttttttctttatgatcagGTGAAGACCTGTAAACCTGCCCTGGGCTACAGCTTTGTTGCAGGCACGACTGATGGAGTTTCAGGTCTTAATATCACTCAGGgtaagttataatgtgtctgaaactccacagcccaaaatcttgggttgtca Alignment from Exonerate_coding2genome GTGAAGACGTGTAAACCTGCCCTGGGCTACAGTTTTGCCGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGG ttcttcatatgtcttgaaacacagaataatttttttttctttatgatcagGTGAAGACCTGTAAACCTGCCCTGGGCTACAGCTTTGTTGCAGGCACGACTGATGGAGTTTCAGGTCTTAATATCACTCAGGgtaagttataatgtgtctgaaactccacagcccaaaatcttgggttgtca Alignment from GeneWise GTGAAGACGTGTAAACCTGCCCTGGGCTACAGTTTTGCCGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGG ttcttcatatgtcttgaaacacagaataatttttttttctttatgatcagGTGAAGACCTGTAAACCTGCCCTGGGCTACAGCTTTGTTGCAGGCACGACTGATGGAGTTTCAGGTCTTAATATCACTCAGGgtaagttataatgtgtctgaaactccacagcccaaaatcttgggttgtca #### Asah2_ID6664_10 --> 0 - 0 Original Alignment ---------------GAGCTGTATGCCTCTGCCTCCCAGGAGGTGACCGGCCCAGTGCTTGCAGCTCACCAGTGGGTGAACATGACAGATGTGAGCGTCCAGCTCAATGCCACACACACA cagcctggtcatccttaggttataaattttcccatcccaccatactgcagGTGGGTTTTCCACAGGAGCTT---TCTTCTGCATCCCAGAAGGAAACAGGTTCAGTACTTGCAGCTCACCAGTGGGTGAACATGACAGATCTGAGCATCCAACTCAATGTCTGCCACACAgtaagcatgtccggccacaagcgctagcaaggttgtgtaggaccccttca Alignment from CESAR GAGCTGTATGCCTCTGCCTCCCAGGAGGTGACCGGCCCAGTGCTTGCAGCTCACCAGTGGGTGAACATGACAGATGTGAGCGTCCAGCTCAATGCCACACACACA aatatggttttaaaacagcctggtcatccttaggttataacatactgcaggtgggttttccacagGAGCTT---TCTTCTGCATCCCAGAAGGAAACAGGTTCAGTACTTGCAGCTCACCAGTGGGTGAACATGACAGATCTGAGCATCCAACTCAATGTCTGCCACACAgtaagcatgtccggccacaagcgctagcaaggttgtgtaggaccccttca Alignment from Spaln_aa2Genome GAGCTGTATGCCTCTGCCTCCCAGGAGGTGACCGGCCCAGTGCTTGCAGCTCACCAGTGGGTGAACATGACAGATGTGAGCGTCCAGCTCAATGCCACACACACA cagcctggtcatccttaggttataaattttcccatcccaccatactgcaggtgggttttccacagGAGCTT---TCTTCTGCATCCCAGAAGGAAACAGGTTCAGTACTTGCAGCTCACCAGTGGGTGAACATGACAGATCTGAGCATCCAACTCAATGTCTGCCACACAgtaagcatgtccggccacaagcgctagcaaggttgtgtaggaccccttca Alignment from Spaln_nt2Genome CTGTATGCCTCTGCCTCCCAGGAGGTGACCGGCCCAGTGCTTGCAGCTCACCAGTGGGTGAACATGACAGATGTGAGCGTCCAGCTCAATGCCACACACACA cagcctggtcatccttaggttataaattttcccatcccaccatactgcaggtgggttttccacagGAGCTTTCTTCTGCATCCCAGAAGGAAACAGGTTCAGTACTTGCAGCTCACCAGTGGGTGAACATGACAGATCTGAGCATCCAACTCAATGTCTGCCACACAgtaagcatgtccggccacaagcgctagcaaggttgtgtaggaccccttca Alignment from Pairagon GAGCTGTATGCCTCTGCCTCCCAGGAGGTGACCGGCCCAGTGCTTGCAGCTCACCAGTGGGTGAACATGACAGATGTGAGCGTCCAGCTCAATGCCACACACACA cagcctggtcatccttaggttataaattttcccatcccaccatactgcaggtgggttttccacagGAGCT---TTCTTCTGCATCCCAGAAGGAAACAGGTTCAGTACTTGCAGCTCACCAGTGGGTGAACATGACAGATCTGAGCATCCAACTCAATGTCTGCCACACAgtaagcatgtccggccacaagcgctagcaaggttgtgtaggaccccttca Alignment from Exonerate_protein2genome GAGCTGTATGCCTCTGCCTCCCAGGAGGTGACCGGCCCAGTGCTTGCAGCTCACCAGTGGGTGAACATGACAGATGTGAGCGTCCAGCTCAATGCCACACACACA cagcctggtcatccttaggttataaattttcccatcccaccatactgcaggtgggttttccacagGAGCTT---TCTTCTGCATCCCAGAAGGAAACAGGTTCAGTACTTGCAGCTCACCAGTGGGTGAACATGACAGATCTGAGCATCCAACTCAATGTCTGCCACACAgtaagcatgtccggccacaagcgctagcaaggttgtgtaggaccccttca Alignment from Exonerate_coding2genome GAGCTGTATGCCTCTGCCTCCCAGGAGGTGACCGGCCCAGTGCTTGCAGCTCACCAGTGGGTGAACATGACAGATGTGAGCGTCCAGCTCAATGCCACACACACA cagcctggtcatccttaggttataaattttcccatcccaccatactgcaggtgggttttccacagGAGCTT---TCTTCTGCATCCCAGAAGGAAACAGGTTCAGTACTTGCAGCTCACCAGTGGGTGAACATGACAGATCTGAGCATCCAACTCAATGTCTGCCACACAgtaagcatgtccggccacaagcgctagcaaggttgtgtaggaccccttca Alignment from GeneWise GAGCTGTATGCCTCTGCCTCCCAGGAGGTGACCGGCCCAGTGCTTGCAGCTCACCAGTGGGTGAACATGACAGATGTGAGCGTCCAGCTCAATGCCACACACACA cagcctggtcatccttaggttataaattttcccatcccaccatactgcaggtgggttttccacagGAGCTT---TCTTCTGCATCCCAGAAGGAAACAGGTTCAGTACTTGCAGCTCACCAGTGGGTGAACATGACAGATCTGAGCATCCAACTCAATGTCTGCCACACAgtaagcatgtccggccacaagcgctagcaaggttgtgtaggaccccttca #### Asah2_ID6666_8 --> 0 - 0 Original Alignment GGACCGTTTGTAGCAGGCTTTGCTTCATCAAATCTCGGAGACGTGTCACCCAACATTCTTGGCCCGCATTGTGTCAACACAGGGGAGTCTTGTGACAACGACAAGAGCACCTGTCCCAACGGTGGG taaggttaaagaagttgtagcaatttgtgtttattttcttggtcctatagGGACCATTTGTAACAGGTGTTGTATCAGCTAACCTTGGAGATGTATCACCCAACATTGTTGGTCCACATTGTGTCAACACTGGTGAGTCTTGTGATAACGAGAAGAGCACGTGTCCCAATGGTGGTgtaccgatttaagggtagtggttcaccaatgtttagttgtatgctcatgc Alignment from CESAR GGACCGTTTGTAGCAGGCTTTGCTTCATCAAATCTCGGAGACGTGTCACCCAACATTCTTGGCCCGCATTGTGTCAACACAGGGGAGTCTTGTGACAACGACAAGAGCACCTGTCCCAACGGTGGG taaggttaaagaagttgtagcaatttgtgtttattttcttggtcctatagGGACCATTTGTAACAGGTGTTGTATCAGCTAACCTTGGAGATGTATCACCCAACATTGTTGGTCCACATTGTGTCAACACTGGTGAGTCTTGTGATAACGAGAAGAGCACGTGTCCCAATGGTGGTgtaccgatttaagggtagtggttcaccaatgtttagttgtatgctcatgc Alignment from Spaln_aa2Genome GGACCGTTTGTAGCAGGCTTTGCTTCATCAAATCTCGGAGACGTGTCACCCAACATTCTTGGCCCGCATTGTGTCAACACAGGGGAGTCTTGTGACAACGACAAGAGCACCTGTCCCAACGGTGGG taaggttaaagaagttgtagcaatttgtgtttattttcttggtcctatagGGACCATTTGTAACAGGTGTTGTATCAGCTAACCTTGGAGATGTATCACCCAACATTGTTGGTCCACATTGTGTCAACACTGGTGAGTCTTGTGATAACGAGAAGAGCACGTGTCCCAATGGTGGTgtaccgatttaagggtagtggttcaccaatgtttagttgtatgctcatgc Alignment from Spaln_nt2Genome GGACCGTTTGTAGCAGGCTTTGCTTCATCAAATCTCGGAGACGTGTCACCCAACATTCTTGGCCCGCATTGTGTCAACACAGGGGAGTCTTGTGACAACGACAAGAGCACCTGTCCCAACGGTGGG taaggttaaagaagttgtagcaatttgtgtttattttcttggtcctatagGGACCATTTGTAACAGGTGTTGTATCAGCTAACCTTGGAGATGTATCACCCAACATTGTTGGTCCACATTGTGTCAACACTGGTGAGTCTTGTGATAACGAGAAGAGCACGTGTCCCAATGGTGGTgtaccgatttaagggtagtggttcaccaatgtttagttgtatgctcatgc Alignment from Pairagon GGACCGTTTGTAGCAGGCTTTGCTTCATCAAATCTCGGAGACGTGTCACCCAACATTCTTGGCCCGCATTGTGTCAACACAGGGGAGTCTTGTGACAACGACAAGAGCACCTGTCCCAACGGTGGG taaggttaaagaagttgtagcaatttgtgtttattttcttggtcctatagGGACCATTTGTAACAGGTGTTGTATCAGCTAACCTTGGAGATGTATCACCCAACATTGTTGGTCCACATTGTGTCAACACTGGTGAGTCTTGTGATAACGAGAAGAGCACGTGTCCCAATGGTGGTgtaccgatttaagggtagtggttcaccaatgtttagttgtatgctcatgc Alignment from Exonerate_protein2genome GGACCGTTTGTAGCAGGCTTTGCTTCATCAAATCTCGGAGACGTGTCACCCAACATTCTTGGCCCGCATTGTGTCAACACAGGGGAGTCTTGTGACAACGACAAGAGCACCTGTCCCAACGGTGGG taaggttaaagaagttgtagcaatttgtgtttattttcttggtcctatagGGACCATTTGTAACAGGTGTTGTATCAGCTAACCTTGGAGATGTATCACCCAACATTGTTGGTCCACATTGTGTCAACACTGGTGAGTCTTGTGATAACGAGAAGAGCACGTGTCCCAATGGTGGTgtaccgatttaagggtagtggttcaccaatgtttagttgtatgctcatgc Alignment from Exonerate_coding2genome GGACCGTTTGTAGCAGGCTTTGCTTCATCAAATCTCGGAGACGTGTCACCCAACATTCTTGGCCCGCATTGTGTCAACACAGGGGAGTCTTGTGACAACGACAAGAGCACCTGTCCCAACGGTGGG taaggttaaagaagttgtagcaatttgtgtttattttcttggtcctatagGGACCATTTGTAACAGGTGTTGTATCAGCTAACCTTGGAGATGTATCACCCAACATTGTTGGTCCACATTGTGTCAACACTGGTGAGTCTTGTGATAACGAGAAGAGCACGTGTCCCAATGGTGGTgtaccgatttaagggtagtggttcaccaatgtttagttgtatgctcatgc Alignment from GeneWise GGACCGTTTGTAGCAGGCTTTGCTTCATCAAATCTCGGAGACGTGTCACCCAACATTCTTGGCCCGCATTGTGTCAACACAGGGGAGTCTTGTGACAACGACAAGAGCACCTGTCCCAACGGTGGG taaggttaaagaagttgtagcaatttgtgtttattttcttggtcctatagGGACCATTTGTAACAGGTGTTGTATCAGCTAACCTTGGAGATGTATCACCCAACATTGTTGGTCCACATTGTGTCAACACTGGTGAGTCTTGTGATAACGAGAAGAGCACGTGTCCCAATGGTGGTgtaccgatttaagggtagtggttcaccaatgtttagttgtatgctcatgc #### Asah2_ID6671_3 --> 0 - 0 Original Alignment ATGGGCTATGGCAAAAATGGCCAGAATGCACGGGGTCTCCTCACCAGGCTG------TTCAGCCGTGCTTTTATCTTGGCGGATCCAGATGGGTCAAATCGAATGGCATTTGTGAGCGTGGAACTATGTATGATTTCCCAACGACTGAGGTTGGAG tagaaatggtttctaaatctaatgtcactgagacagtattgcttttgcagATGGGATATGGAAAGAATGGCCAGAATGCACGGGGTCTGCTCACAAGGCTGTGGTTGTTTAGTCAGGTTTTCATACTGGCAGACGCAGATGGGTCCAATCGA------TTTGTAAGTGTAGAACTATGTATGATCTCCCAACGATTGCGATTTGAGgtgagtatattataggaatgtttattgtaaacatggtatgtatagtcccc Alignment from CESAR ATGGGCTATGGCAAAAATGGCCAGAATGCACGGGGTCTCCTCACCAGGCTG------TTCAGCCGTGCTTTTATCTTGGCGGATCCAGATGGGTCAAATCGAATGGCATTTGTGAGCGTGGAACTATGTATGATTTCCCAACGACTGAGGTTGGAG tagaaatggtttctaaatctaatgtcactgagacagtattgcttttgcagATGGGATATGGAAAGAATGGCCAGAATGCACGGGGTCTGCTCACAAGGCTGTGGTTGTTTAGTCAGGTTTTCATACTGGCAGACGCAGATGGGTCCAATCGA------TTTGTAAGTGTAGAACTATGTATGATCTCCCAACGATTGCGATTTGAGgtgagtatattataggaatgtttattgtaaacatggtatgtatagtcccc Alignment from Spaln_aa2Genome ATGGGCTATGGCAAAAATGGCCAGAATGCACGGGGTCTCCTCACCAGGCTGTTCAGCCGTGCTTTTATCTTGGCGGATCCAGATGGGTCAAATCGAATGGCATTTGTGAGCGTGGAACTATGTATGATTTCCCAACGACTGAGGTTGGAG tagaaatggtttctaaatctaatgtcactgagacagtattgcttttgcagATGGGATATGGAAAGAATGGCCAGAATGCACGGGGTCTGCTCACAAGGCTGTGGTTGTTTAGTCAGGTTTTCATACTGGCAGACGCAGATGGGTCCAATCGATTTGTAAGTGTAGAACTATGTATGATCTCCCAACGATTGCGATTTGAGgtgagtatattataggaatgtttattgtaaacatggtatgtatagtcccc Alignment from Spaln_nt2Genome ATGGGCTATGGCAAAAATGGCCAGAATGCACGGGGTCTCCTCACCAGGCTGT------TCAGCCGTGCTTTTATCTTGGCGGATCCAGATGGGTCAAATCGAATGGCATTTGTGAGCGTGGAACTATGTATGATTTCCCAACGACTGAGGTTGGAG tagaaatggtttctaaatctaatgtcactgagacagtattgcttttgcagATGGGATATGGAAAGAATGGCCAGAATGCACGGGGTCTGCTCACAAGGCTGTGGTTGTTTAGTCAGGTTTTCATACTGGCAGACGCAGATGGGTCCAATCG------ATTTGTAAGTGTAGAACTATGTATGATCTCCCAACGATTGCGATTTGAGgtgagtatattataggaatgtttattgtaaacatggtatgtatagtcccc Alignment from Pairagon ATGGGCTATGGCAAAAATGGCCAGAATGCACGGGGTCTCCTCACCAGGC------TGTTCAGCCGTGCTTTTATCTTGGCGGATCCAGATGGGTCAAATCGAATGGCATTTGTGAGCGTGGAACTATGTATGATTTCCCAACGACTGAGGTTGGAG tagaaatggtttctaaatctaatgtcactgagacagtattgcttttgcagATGGGATATGGAAAGAATGGCCAGAATGCACGGGGTCTGCTCACAAGGCTGTGGTTGTTTAGTCAGGTTTTCATACTGGCAGACGCAGATGGGTCCAATCG------ATTTGTAAGTGTAGAACTATGTATGATCTCCCAACGATTGCGATTTGAGgtgagtatattataggaatgtttattgtaaacatggtatgtatagtcccc Alignment from Exonerate_protein2genome ATGGGCTATGGCAAAAATGGCCAGAATGCACGGGGTCTCCTCACCAGG------CTGTTCAGCCGTGCTTTTATCTTGGCGGATCCAGATGGGTCAAATCGAATGGCATTTGTGAGCGTGGAACTATGTATGATTTCCCAACGACTGAGGTTGGAG tagaaatggtttctaaatctaatgtcactgagacagtattgcttttgcagATGGGATATGGAAAGAATGGCCAGAATGCACGGGGTCTGCTCACAAGGCTGTGGTTGTTTAGTCAGGTTTTCATACTGGCAGACGCAGATGGGTCCAATCGA------TTTGTAAGTGTAGAACTATGTATGATCTCCCAACGATTGCGATTTGAGgtgagtatattataggaatgtttattgtaaacatggtatgtatagtcccc Alignment from Exonerate_coding2genome ATGGGCTATGGCAAAAATGGCCAGAATGCACGGGGTCTCCTCACCAGG------CTGTTCAGCCGTGCTTTTATCTTGGCGGATCCAGATGGGTCAAATCGAATGGCATTTGTGAGCGTGGAACTATGTATGATTTCCCAACGACTGAGGTTGGAG tagaaatggtttctaaatctaatgtcactgagacagtattgcttttgcagATGGGATATGGAAAGAATGGCCAGAATGCACGGGGTCTGCTCACAAGGCTGTGGTTGTTTAGTCAGGTTTTCATACTGGCAGACGCAGATGGGTCCAATCGA------TTTGTAAGTGTAGAACTATGTATGATCTCCCAACGATTGCGATTTGAGgtgagtatattataggaatgtttattgtaaacatggtatgtatagtcccc Alignment from GeneWise ATGGGCTATGGCAAAAATGGCCAGAATGCACGGGGTCTCCTCACCAGG------CTGTTCAGCCGTGCTTTTATCTTGGCGGATCCAGATGGGTCAAATCGAATGGCATTTGTGAGCGTGGAACTATGTATGATTTCCCAACGACTGAGGTTGGAG tagaaatggtttctaaatctaatgtcactgagacagtattgcttttgcagATGGGATATGGAAAGAATGGCCAGAATGCACGGGGTCTGCTCACAAGGCTGTGGTTGTTTAGTCAGGTTTTCATACTGGCAGACGCAGATGGGTCCAATCGA------TTTGTAAGTGTAGAACTATGTATGATCTCCCAACGATTGCGATTTGAGgtgagtatattataggaatgtttattgtaaacatggtatgtatagtcccc #### Atad1_ID6723_7 --> 0 - 0 Original Alignment GCTCTAAAACAAAGAGAAGCAATTTTAAAGCTCATCTTGAAAAATGAAAAT tctccaacatccctagcaattgctcgcatgtgctgcttctctgtgcccagGCTCTAAAACAAAGAGAAGCAATTTTGAAGCTCATCTTGAAAAATGAAAATgtaagctcacattcttttggagtagccatacatcatttttttatgtttag Alignment from CESAR GCTCTAAAACAAAGAGAAGCAATTTTAAAGCTCATCTTGAAAAATGAAAAT tctccaacatccctagcaattgctcgcatgtgctgcttctctgtgcccagGCTCTAAAACAAAGAGAAGCAATTTTGAAGCTCATCTTGAAAAATGAAAATgtaagctcacattcttttggagtagccatacatcatttttttatgtttag Alignment from Spaln_aa2Genome GCTCTAAAACAAAGAGAAGCAATTTTAAAGCTCATCTTGAAAAATGAAAAT tctccaacatccctagcaattgctcgcatgtgctgcttctctgtgcccagGCTCTAAAACAAAGAGAAGCAATTTTGAAGCTCATCTTGAAAAATGAAAATgtaagctcacattcttttggagtagccatacatcatttttttatgtttag Alignment from Spaln_nt2Genome GCTCTAAAACAAAGAGAAGCAATTTTAAAGCTCATCTTGAAAAATGAAAAT tctccaacatccctagcaattgctcgcatgtgctgcttctctgtgcccagGCTCTAAAACAAAGAGAAGCAATTTTGAAGCTCATCTTGAAAAATGAAAATgtaagctcacattcttttggagtagccatacatcatttttttatgtttag Alignment from Pairagon GCTCTAAAACAAAGAGAAGCAATTTTAAAGCTCATCTTGAAAAATGAAAAT tctccaacatccctagcaattgctcgcatgtgctgcttctctgtgcccagGCTCTAAAACAAAGAGAAGCAATTTTGAAGCTCATCTTGAAAAATGAAAATgtaagctcacattcttttggagtagccatacatcatttttttatgtttag Alignment from Exonerate_protein2genome GCTCTAAAACAAAGAGAAGCAATTTTAAAGCTCATCTTGAAAAATGAAAAT tctccaacatccctagcaattgctcgcatgtgctgcttctctgtgcccagGCTCTAAAACAAAGAGAAGCAATTTTGAAGCTCATCTTGAAAAATGAAAATgtaagctcacattcttttggagtagccatacatcatttttttatgtttag Alignment from Exonerate_coding2genome GCTCTAAAACAAAGAGAAGCAATTTTAAAGCTCATCTTGAAAAATGAAAAT tctccaacatccctagcaattgctcgcatgtgctgcttctctgtgcccagGCTCTAAAACAAAGAGAAGCAATTTTGAAGCTCATCTTGAAAAATGAAAATgtaagctcacattcttttggagtagccatacatcatttttttatgtttag Alignment from GeneWise GCTCTAAAACAAAGAGAAGCAATTTTAAAGCTCATCTTGAAAAATGAAAAT tctccaacatccctagcaattgctcgcatgtgctgcttctctgtgcccagGCTCTAAAACAAAGAGAAGCAATTTTGAAGCTCATCTTGAAAAATGAAAATgtaagctcacattcttttggagtagccatacatcatttttttatgtttag #### Atad1_ID6727_3 --> 0 - 1 Original Alignment GTTACTTGGAGTGATATAGCAGGTTTAGATGACGTCATTACAGATCTGAAAGACACAGTCATCTTACCTATCAAAAAGAAGCATTTGTTTGAGAATTCCAGACTACTGCAGCCTCCAAAAg aaactttgaattttgtttagatatgcagatacctattatcttcaatgcagGTCACTTGGAGTGATATAGCAGGCTTAGACGATGTCATTGCTGATCTAAAAGGCACAGTTATCTTACCCATCAAAAGAAAACATTTGTTTGAGAATTCCAGACTCCTGCAGCCTCCAAAGggtaccctagaggcctcaattggataacagtgctatcataataaaattagt Alignment from CESAR GTTACTTGGAGTGATATAGCAGGTTTAGATGACGTCATTACAGATCTGAAAGACACAGTCATCTTACCTATCAAAAAGAAGCATTTGTTTGAGAATTCCAGACTACTGCAGCCTCCAAAAg aaactttgaattttgtttagatatgcagatacctattatcttcaatgcagGTCACTTGGAGTGATATAGCAGGCTTAGACGATGTCATTGCTGATCTAAAAGGCACAGTTATCTTACCCATCAAAAGAAAACATTTGTTTGAGAATTCCAGACTCCTGCAGCCTCCAAAGggtaccctagaggcctcaattggataacagtgctatcataataaaattagt Alignment from Spaln_aa2Genome GTTACTTGGAGTGATATAGCAGGTTTAGATGACGTCATTACAGATCTGAAAGACACAGTCATCTTACCTATCAAAAAGAAGCATTTGTTTGAGAATTCCAGACTACTGCAGCCTCCAAAAG aaactttgaattttgtttagatatgcagatacctattatcttcaatgcagGTCACTTGGAGTGATATAGCAGGCTTAGACGATGTCATTGCTGATCTAAAAGGCACAGTTATCTTACCCATCAAAAGAAAACATTTGTTTGAGAATTCCAGACTCCTGCAGCCTCCAAAGGgtaccctagaggcctcaattggataacagtgctatcataataaaattagt Alignment from Spaln_nt2Genome GTTACTTGGAGTGATATAGCAGGTTTAGATGACGTCATTACAGATCTGAAAGACACAGTCATCTTACCTATCAAAAAGAAGCATTTGTTTGAGAATTCCAGACTACTGCAGCCTCCAAAAG aaactttgaattttgtttagatatgcagatacctattatcttcaatgcagGTCACTTGGAGTGATATAGCAGGCTTAGACGATGTCATTGCTGATCTAAAAGGCACAGTTATCTTACCCATCAAAAGAAAACATTTGTTTGAGAATTCCAGACTCCTGCAGCCTCCAAAGGgtaccctagaggcctcaattggataacagtgctatcataataaaattagt Alignment from Pairagon GTTACTTGGAGTGATATAGCAGGTTTAGATGACGTCATTACAGATCTGAAAGACACAGTCATCTTACCTATCAAAAAGAAGCATTTGTTTGAGAATTCCAGACTACTGCAGCCTCCAAAAG aaactttgaattttgtttagatatgcagatacctattatcttcaatgcagGTCACTTGGAGTGATATAGCAGGCTTAGACGATGTCATTGCTGATCTAAAAGGCACAGTTATCTTACCCATCAAAAGAAAACATTTGTTTGAGAATTCCAGACTCCTGCAGCCTCCAAAGGgtaccctagaggcctcaattggataacagtgctatcataataaaattagt Alignment from Exonerate_protein2genome GTTACTTGGAGTGATATAGCAGGTTTAGATGACGTCATTACAGATCTGAAAGACACAGTCATCTTACCTATCAAAAAGAAGCATTTGTTTGAGAATTCCAGACTACTGCAGCCTCCAAAAG aaactttgaattttgtttagatatgcagatacctattatcttcaatgcagGTCACTTGGAGTGATATAGCAGGCTTAGACGATGTCATTGCTGATCTAAAAGGCACAGTTATCTTACCCATCAAAAGAAAACATTTGTTTGAGAATTCCAGACTCCTGCAGCCTCCAAAGGgtaccctagaggcctcaattggataacagtgctatcataataaaattagt Alignment from Exonerate_coding2genome GTTACTTGGAGTGATATAGCAGGTTTAGATGACGTCATTACAGATCTGAAAGACACAGTCATCTTACCTATCAAAAAGAAGCATTTGTTTGAGAATTCCAGACTACTGCAGCCTCCAAAAG aaactttgaattttgtttagatatgcagatacctattatcttcaatgcagGTCACTTGGAGTGATATAGCAGGCTTAGACGATGTCATTGCTGATCTAAAAGGCACAGTTATCTTACCCATCAAAAGAAAACATTTGTTTGAGAATTCCAGACTCCTGCAGCCTCCAAAGGgtaccctagaggcctcaattggataacagtgctatcataataaaattagt Alignment from GeneWise ---ACTTGGAGTGATATAGCAGGTTTAGATGACGTCATTACAGATCTGAAAGACACAGTCATCTTACCTATCAAAAAGAAGCATTTGTTTGAGAATTCCAGACTACTGCAGCCTCCAAAAG aaactttgaattttgtttagatatgcagatacctattatcttcaatgcagGTCACTTGGAGTGATATAGCAGGCTTAGACGATGTCATTGCTGATCTAAAAGGCACAGTTATCTTACCCATCAAAAGAAAACATTTGTTTGAGAATTCCAGACTCCTGCAGCCTCCAAAGGgtaccctagaggcctcaattggataacagtgctatcataataaaattagt #### Atl3_ID2160_2 --> 2 - 0 Original Alignment gtGATGCCATGGAAAATGGAAAACCTGGTCCAGTGCAGGTTGTTTTGGTTCATAAAGAACAACATTCCTTTGAGCTAGAAGAGAGAGCCTTGGCCAGCGTCCTCCTCCAAGACCATATCCGAGATCTTGATGTGGTGGTAGTATCAGTGGCTGGTGCTTTTCGAAAGGGTAAATCCTTCATTCTGGACTTTATGCTGCGATACTTATATTCTCAG gcttgctagatgtgtttagcttcatctatgagtaattgtatccatcgcaggtGATGCCATGGAAAATGAAAAACCTGGTCCAGTCCAGGTTGTCTTGGTTCATAAGGAGCAACATACCTTAGAGCTGGAAGAAAGAGCTCTTGCCAGTGTTCTCCTTCAAGACCATATCCAAGATCTTGATGTGGTGGTTGTATCAGTTGCTAGCGCCTTTCGAAGGGGTAAATCCTTCATTCTGGACTTTATGCTGCGGTACTTATACTCTCAAgtaagaatgtattttaactaagaacaaaaatgcattttaattgaaactaa Alignment from CESAR gtGATGCCATGGAAAATGGAAAACCTGGTCCAGTGCAGGTTGTTTTGGTTCATAAAGAACAACATTCCTTTGAGCTAGAAGAGAGAGCCTTGGCCAGCGTCCTCCTCCAAGACCATATCCGAGATCTTGATGTGGTGGTAGTATCAGTGGCTGGTGCTTTTCGAAAGGGTAAATCCTTCATTCTGGACTTTATGCTGCGATACTTATATTCTCAG gcttgctagatgtgtttagcttcatctatgagtaattgtatccatcgcaggtGATGCCATGGAAAATGAAAAACCTGGTCCAGTCCAGGTTGTCTTGGTTCATAAGGAGCAACATACCTTAGAGCTGGAAGAAAGAGCTCTTGCCAGTGTTCTCCTTCAAGACCATATCCAAGATCTTGATGTGGTGGTTGTATCAGTTGCTAGCGCCTTTCGAAGGGGTAAATCCTTCATTCTGGACTTTATGCTGCGGTACTTATACTCTCAAgtaagaatgtattttaactaagaacaaaaatgcattttaattgaaactaa Alignment from Spaln_aa2Genome GTGATGCCATGGAAAATGGAAAACCTGGTCCAGTGCAGGTTGTTTTGGTTCATAAAGAACAACATTCCTTTGAGCTAGAAGAGAGAGCCTTGGCCAGCGTCCTCCTCCAAGACCATATCCGAGATCTTGATGTGGTGGTAGTATCAGTGGCTGGTGCTTTTCGAAAGGGTAAATCCTTCATTCTGGACTTTATGCTGCGATACTTATATTCTCAG gcttgctagatgtgtttagcttcatctatgagtaattgtatccatcgcagGTGATGCCATGGAAAATGAAAAACCTGGTCCAGTCCAGGTTGTCTTGGTTCATAAGGAGCAACATACCTTAGAGCTGGAAGAAAGAGCTCTTGCCAGTGTTCTCCTTCAAGACCATATCCAAGATCTTGATGTGGTGGTTGTATCAGTTGCTAGCGCCTTTCGAAGGGGTAAATCCTTCATTCTGGACTTTATGCTGCGGTACTTATACTCTCAAgtaagaatgtattttaactaagaacaaaaatgcattttaattgaaactaa Alignment from Spaln_nt2Genome GTGATGCCATGGAAAATGGAAAACCTGGTCCAGTGCAGGTTGTTTTGGTTCATAAAGAACAACATTCCTTTGAGCTAGAAGAGAGAGCCTTGGCCAGCGTCCTCCTCCAAGACCATATCCGAGATCTTGATGTGGTGGTAGTATCAGTGGCTGGTGCTTTTCGAAAGGGTAAATCCTTCATTCTGGACTTTATGCTGCGATACTTATATTCTCAG gcttgctagatgtgtttagcttcatctatgagtaattgtatccatcgcagGTGATGCCATGGAAAATGAAAAACCTGGTCCAGTCCAGGTTGTCTTGGTTCATAAGGAGCAACATACCTTAGAGCTGGAAGAAAGAGCTCTTGCCAGTGTTCTCCTTCAAGACCATATCCAAGATCTTGATGTGGTGGTTGTATCAGTTGCTAGCGCCTTTCGAAGGGGTAAATCCTTCATTCTGGACTTTATGCTGCGGTACTTATACTCTCAAgtaagaatgtattttaactaagaacaaaaatgcattttaattgaaactaa Alignment from Pairagon GTGATGCCATGGAAAATGGAAAACCTGGTCCAGTGCAGGTTGTTTTGGTTCATAAAGAACAACATTCCTTTGAGCTAGAAGAGAGAGCCTTGGCCAGCGTCCTCCTCCAAGACCATATCCGAGATCTTGATGTGGTGGTAGTATCAGTGGCTGGTGCTTTTCGAAAGGGTAAATCCTTCATTCTGGACTTTATGCTGCGATACTTATATTCTCAG gcttgctagatgtgtttagcttcatctatgagtaattgtatccatcgcagGTGATGCCATGGAAAATGAAAAACCTGGTCCAGTCCAGGTTGTCTTGGTTCATAAGGAGCAACATACCTTAGAGCTGGAAGAAAGAGCTCTTGCCAGTGTTCTCCTTCAAGACCATATCCAAGATCTTGATGTGGTGGTTGTATCAGTTGCTAGCGCCTTTCGAAGGGGTAAATCCTTCATTCTGGACTTTATGCTGCGGTACTTATACTCTCAAgtaagaatgtattttaactaagaacaaaaatgcattttaattgaaactaa Alignment from Exonerate_protein2genome GCAGTCACAGGTGATGCCATGGAAAATGGAAAACCTGGTCCAGTGCAGGTTGTTTTGGTTCATAAAGAACAACATTCCTTTGAGCTAGAAGAGAGAGCCTTGGCCAGCGTCCTCCTCCAAGACCATATCCGAGATCTTGATGTGGTGGTAGTATCAGTGGCTGGTGCTTTTCGAAAGGGTAAATCCTTCATTCTGGACTTTATGCTGCGATACTTATATTCTCAG gcttgctagatgtgtttagcttcatctatgagtaattgtaTCCATCGCAGGTGATGCCATGGAAAATGAAAAACCTGGTCCAGTCCAGGTTGTCTTGGTTCATAAGGAGCAACATACCTTAGAGCTGGAAGAAAGAGCTCTTGCCAGTGTTCTCCTTCAAGACCATATCCAAGATCTTGATGTGGTGGTTGTATCAGTTGCTAGCGCCTTTCGAAGGGGTAAATCCTTCATTCTGGACTTTATGCTGCGGTACTTATACTCTCAAgtaagaatgtattttaactaagaacaaaaatgcattttaattgaaactaa Alignment from Exonerate_coding2genome GCAGTCACAGGTGATGCCATGGAAAATGGAAAACCTGGTCCAGTGCAGGTTGTTTTGGTTCATAAAGAACAACATTCCTTTGAGCTAGAAGAGAGAGCCTTGGCCAGCGTCCTCCTCCAAGACCATATCCGAGATCTTGATGTGGTGGTAGTATCAGTGGCTGGTGCTTTTCGAAAGGGTAAATCCTTCATTCTGGACTTTATGCTGCGATACTTATATTCTCAG gcttgctagatgtgtttagcttcatctatgagtaattgtaTCCATCGCAGGTGATGCCATGGAAAATGAAAAACCTGGTCCAGTCCAGGTTGTCTTGGTTCATAAGGAGCAACATACCTTAGAGCTGGAAGAAAGAGCTCTTGCCAGTGTTCTCCTTCAAGACCATATCCAAGATCTTGATGTGGTGGTTGTATCAGTTGCTAGCGCCTTTCGAAGGGGTAAATCCTTCATTCTGGACTTTATGCTGCGGTACTTATACTCTCAAgtaagaatgtattttaactaagaacaaaaatgcattttaattgaaactaa Alignment from GeneWise GACCCGACATTCCAGTACGCAGTCACAGGTGATGCCATGGAAAATGGAAAACCTGGTCCAGTGCAGGTTGTTTTGGTTCATAAAGAACAACATTCCTTTGAGCTAGAAGAGAGAGCCTTGGCCAGCGTCCTCCTCCAAGACCATATCCGAGATCTTGATGTGGTGGTAGTATCAGTGGCTGGTGCTTTTCGAAAGGGTAAATCCTTCATTCTGGACTTTATGCTGCGATACTTATATTCTCAG ttagcttcatctatgagtaatt---------------GTATCCATCGCAGGTGATGCCATGGAAAATGAAAAACCTGGTCCAGTCCAGGTTGTCTTGGTTCATAAGGAGCAACATACCTTAGAGCTGGAAGAAAGAGCTCTTGCCAGTGTTCTCCTTCAAGACCATATCCAAGATCTTGATGTGGTGGTTGTATCAGTTGCTAGCGCCTTTCGAAGGGGTAAATCCTTCATTCTGGACTTTATGCTGCGGTACTTATACTCTCAAgtaagaatgtattttaactaagaacaaaaatgcattttaattgaaactaa #### Atl3_ID2166_8 --> 0 - 1 Original Alignment GTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCCGATGTCACCTGTTTTCTCTTACCACATCCAGGGCTCCAGGTGGCCACAAGCCCCAACTTTGATGGGAAATTGAAAg cgcctacggactccatcggtttctacctccgttcctttgtgccctggcagGTAAAGGAGCATCAACATGAAGAGAATCAAAATGTGAGAAACCACATCTATTCATGCTTTTCTGATGTAGCCTGTTATCTCTTACCACATCCTGGGCTTCAGGTGGCAACAAGCCCCAACTTTGATGGGAAACTGAAGggtatgtttgacattattggattctgtgtattggacactgttgatttttag Alignment from CESAR GTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCCGATGTCACCTGTTTTCTCTTACCACATCCAGGGCTCCAGGTGGCCACAAGCCCCAACTTTGATGGGAAATTGAAAg cgcctacggactccatcggtttctacctccgttcctttgtgccctggcagGTAAAGGAGCATCAACATGAAGAGAATCAAAATGTGAGAAACCACATCTATTCATGCTTTTCTGATGTAGCCTGTTATCTCTTACCACATCCTGGGCTTCAGGTGGCAACAAGCCCCAACTTTGATGGGAAACTGAAGggtatgtttgacattattggattctgtgtattggacactgttgatttttag Alignment from Spaln_aa2Genome GTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCCGATGTCACCTGTTTTCTCTTACCACATCCAGGGCTCCAGGTGGCCACAAGCCCCAACTTTGATGGGAAATTGAAAG cgcctacggactccatcggtttctacctccgttcctttgtgccctggcagGTAAAGGAGCATCAACATGAAGAGAATCAAAATGTGAGAAACCACATCTATTCATGCTTTTCTGATGTAGCCTGTTATCTCTTACCACATCCTGGGCTTCAGGTGGCAACAAGCCCCAACTTTGATGGGAAACTGAAGGgtatgtttgacattattggattctgtgtattggacactgttgatttttag Alignment from Spaln_nt2Genome GTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCCGATGTCACCTGTTTTCTCTTACCACATCCAGGGCTCCAGGTGGCCACAAGCCCCAACTTTGATGGGAAATTGAAAG cgcctacggactccatcggtttctacctccgttcctttgtgccctggcagGTAAAGGAGCATCAACATGAAGAGAATCAAAATGTGAGAAACCACATCTATTCATGCTTTTCTGATGTAGCCTGTTATCTCTTACCACATCCTGGGCTTCAGGTGGCAACAAGCCCCAACTTTGATGGGAAACTGAAGGgtatgtttgacattattggattctgtgtattggacactgttgatttttag Alignment from Pairagon GTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCCGATGTCACCTGTTTTCTCTTACCACATCCAGGGCTCCAGGTGGCCACAAGCCCCAACTTTGATGGGAAATTGAAAG cgcctacggactccatcggtttctacctccgttcctttgtgccctggcagGTAAAGGAGCATCAACATGAAGAGAATCAAAATGTGAGAAACCACATCTATTCATGCTTTTCTGATGTAGCCTGTTATCTCTTACCACATCCTGGGCTTCAGGTGGCAACAAGCCCCAACTTTGATGGGAAACTGAAGGgtatgtttgacattattggattctgtgtattggacactgttgatttttag Alignment from Exonerate_protein2genome GTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCCGATGTCACCTGTTTTCTCTTACCACATCCAGGGCTCCAGGTGGCCACAAGCCCCAACTTTGATGGGAAATTGAAAG cgcctacggactccatcggtttctacctccgttcctttgtgccctggcagGTAAAGGAGCATCAACATGAAGAGAATCAAAATGTGAGAAACCACATCTATTCATGCTTTTCTGATGTAGCCTGTTATCTCTTACCACATCCTGGGCTTCAGGTGGCAACAAGCCCCAACTTTGATGGGAAACTGAAGGgtatgtttgacattattggattctgtgtattggacactgttgatttttag Alignment from Exonerate_coding2genome GTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCCGATGTCACCTGTTTTCTCTTACCACATCCAGGGCTCCAGGTGGCCACAAGCCCCAACTTTGATGGGAAATTGAAAG cgcctacggactccatcggtttctacctccgttcctttgtgccctggcagGTAAAGGAGCATCAACATGAAGAGAATCAAAATGTGAGAAACCACATCTATTCATGCTTTTCTGATGTAGCCTGTTATCTCTTACCACATCCTGGGCTTCAGGTGGCAACAAGCCCCAACTTTGATGGGAAACTGAAGGgtatgtttgacattattggattctgtgtattggacactgttgatttttag Alignment from GeneWise GTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCCGATGTCACCTGTTTTCTCTTACCACATCCAGGGCTCCAGGTGGCCACAAGCCCCAACTTTGATGGGAAATTGAAAG cgcctacggactccatcggtttctacctccgttcctttgtgccctggcagGTAAAGGAGCATCAACATGAAGAGAATCAAAATGTGAGAAACCACATCTATTCATGCTTTTCTGATGTAGCCTGTTATCTCTTACCACATCCTGGGCTTCAGGTGGCAACAAGCCCCAACTTTGATGGGAAACTGAAGGgtatgtttgacattattggattctgtgtattggacactgttgatttttag #### Atl3_ID2167_9 --> 2 - 0 Original Alignment atATTGCTAGTGAATTCAAAGAGCAGTTACAGGCTCTAATACCATATGTACTAAATCCATCTAAATTAATGGAGAAGGAGATCAATGGTTCAAAAGTCACCTGCCGGGGATTGTTGGAATATTTTAAG tggcaaccccgcagttattgcgttgaattgtcaatgtaccccctctccagatATTGTTAGTGAACTTGAAGAGCAATTACAGGCCTTAATACCATATGTTTTAAACCCCTCTAAGCTAATGGAGAAGCAGATTAATGGCTCAAAGGCCACTTGCCATGGATTATTGGAGTATTTTAAAgtgaggttttctaattttcttgttatagctatgactatcccagcttgttg Alignment from CESAR atATTGCTAGTGAATTCAAAGAGCAGTTACAGGCTCTAATACCATATGTACTAAATCCATCTAAATTAATGGAGAAGGAGATCAATGGTTCAAAAGTCACCTGCCGGGGATTGTTGGAATATTTTAAG tggcaaccccgcagttattgcgttgaattgtcaatgtaccccctctccagatATTGTTAGTGAACTTGAAGAGCAATTACAGGCCTTAATACCATATGTTTTAAACCCCTCTAAGCTAATGGAGAAGCAGATTAATGGCTCAAAGGCCACTTGCCATGGATTATTGGAGTATTTTAAAgtgaggttttctaattttcttgttatagctatgactatcccagcttgttg Alignment from Spaln_aa2Genome ATATTGCTAGTGAATTCAAAGAGCAGTTACAGGCTCTAATACCATATGTACTAAATCCATCTAAATTAATGGAGAAGGAGATCAATGGTTCAAAAGTCACCTGCCGGGGATTGTTGGAATATTTTAAG tggcaaccccgcagttattgcgttgaattgtcaatgtaccccctctccagATATTGTTAGTGAACTTGAAGAGCAATTACAGGCCTTAATACCATATGTTTTAAACCCCTCTAAGCTAATGGAGAAGCAGATTAATGGCTCAAAGGCCACTTGCCATGGATTATTGGAGTATTTTAAAgtgaggttttctaattttcttgttatagctatgactatcccagcttgttg Alignment from Spaln_nt2Genome ATATTGCTAGTGAATTCAAAGAGCAGTTACAGGCTCTAATACCATATGTACTAAATCCATCTAAATTAATGGAGAAGGAGATCAATGGTTCAAAAGTCACCTGCCGGGGATTGTTGGAATATTTTAAG tggcaaccccgcagttattgcgttgaattgtcaatgtaccccctctccagATATTGTTAGTGAACTTGAAGAGCAATTACAGGCCTTAATACCATATGTTTTAAACCCCTCTAAGCTAATGGAGAAGCAGATTAATGGCTCAAAGGCCACTTGCCATGGATTATTGGAGTATTTTAAAgtgaggttttctaattttcttgttatagctatgactatcccagcttgttg Alignment from Pairagon ATATTGCTAGTGAATTCAAAGAGCAGTTACAGGCTCTAATACCATATGTACTAAATCCATCTAAATTAATGGAGAAGGAGATCAATGGTTCAAAAGTCACCTGCCGGGGATTGTTGGAATATTTTAAG tggcaaccccgcagttattgcgttgaattgtcaatgtaccccctctccagATATTGTTAGTGAACTTGAAGAGCAATTACAGGCCTTAATACCATATGTTTTAAACCCCTCTAAGCTAATGGAGAAGCAGATTAATGGCTCAAAGGCCACTTGCCATGGATTATTGGAGTATTTTAAAgtgaggttttctaattttcttgttatagctatgactatcccagcttgttg Alignment from Exonerate_protein2genome ATATTGCTAGTGAATTCAAAGAGCAGTTACAGGCTCTAATACCATATGTACTAAATCCATCTAAATTAATGGAGAAGGAGATCAATGGTTCAAAAGTCACCTGCCGGGGATTGTTGGAATATTTTAAG tggcaaccccgcagttattgcgttgaattgtcaatgtaccccctctccagATATTGTTAGTGAACTTGAAGAGCAATTACAGGCCTTAATACCATATGTTTTAAACCCCTCTAAGCTAATGGAGAAGCAGATTAATGGCTCAAAGGCCACTTGCCATGGATTATTGGAGTATTTTAAAgtgaggttttctaattttcttgttatagctatgactatcccagcttgttg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATATTGCTAGTGAATTCAAAGAGCAGTTACAGGCTCTAATACCATATGTACTAAATCCATCTAAATTAATGGAGAAGGAGATCAATGGTTCAAAAGTCACCTGCCGGGGATTGTTGGAATATTTTAAG tggcaaccccgcagttattgcgttgaattgtcaatgtaccccctctccagATATTGTTAGTGAACTTGAAGAGCAATTACAGGCCTTAATACCATATGTTTTAAACCCCTCTAAGCTAATGGAGAAGCAGATTAATGGCTCAAAGGCCACTTGCCATGGATTATTGGAGTATTTTAAAgtgaggttttctaattttcttgttatagctatgactatcccagcttgttg #### Atrnl1_ID12434_7 --> 1 - 0 Original Alignment tTACAATTTAGAAAGCAGTATATGGAATGTAGGTGCTGTATCAAGGGGCCCTCTTCAGAGATACGGACATTCTCTTGCCCTCTATCAG ctcaaaggaagaagtttttatgctcatgatgagccgccctttctctacagtTACAATTTAGAAAGCAGTATATGGAATGTAGGCGCTGTATCAAGGGGACCTCTTCAGAGATACGGGCATTCTCTTGCCCTATATCAGgtatggttttttttcctgtcagctgggagaccttagtatacatatcttgc Alignment from CESAR tTACAATTTAGAAAGCAGTATATGGAATGTAGGTGCTGTATCAAGGGGCCCTCTTCAGAGATACGGACATTCTCTTGCCCTCTATCAG ctcaaaggaagaagtttttatgctcatgatgagccgccctttctctacagtTACAATTTAGAAAGCAGTATATGGAATGTAGGCGCTGTATCAAGGGGACCTCTTCAGAGATACGGGCATTCTCTTGCCCTATATCAGgtatggttttttttcctgtcagctgggagaccttagtatacatatcttgc Alignment from Spaln_aa2Genome TTACAATTTAGAAAGCAGTATATGGAATGTAGGTGCTGTATCAAGGGGCCCTCTTCAGAGATACGGACATTCTCTTGCCCTCTATCAG ctcaaaggaagaagtttttatgctcatgatgagccgccctttctctacagTTACAATTTAGAAAGCAGTATATGGAATGTAGGCGCTGTATCAAGGGGACCTCTTCAGAGATACGGGCATTCTCTTGCCCTATATCAGgtatggttttttttcctgtcagctgggagaccttagtatacatatcttgc Alignment from Spaln_nt2Genome TTACAATTTAGAAAGCAGTATATGGAATGTAGGTGCTGTATCAAGGGGCCCTCTTCAGAGATACGGACATTCTCTTGCCCTCTATCAG ctcaaaggaagaagtttttatgctcatgatgagccgccctttctctacagTTACAATTTAGAAAGCAGTATATGGAATGTAGGCGCTGTATCAAGGGGACCTCTTCAGAGATACGGGCATTCTCTTGCCCTATATCAGgtatggttttttttcctgtcagctgggagaccttagtatacatatcttgc Alignment from Pairagon TTACAATTTAGAAAGCAGTATATGGAATGTAGGTGCTGTATCAAGGGGCCCTCTTCAGAGATACGGACATTCTCTTGCCCTCTATCAG ctcaaaggaagaagtttttatgctcatgatgagccgccctttctctacagTTACAATTTAGAAAGCAGTATATGGAATGTAGGCGCTGTATCAAGGGGACCTCTTCAGAGATACGGGCATTCTCTTGCCCTATATCAGgtatggttttttttcctgtcagctgggagaccttagtatacatatcttgc Alignment from Exonerate_protein2genome TTACAATTTAGAAAGCAGTATATGGAATGTAGGTGCTGTATCAAGGGGCCCTCTTCAGAGATACGGACATTCTCTTGCCCTCTATCAG ctcaaaggaagaagtttttatgctcatgatgagccgccctttctctacagTTACAATTTAGAAAGCAGTATATGGAATGTAGGCGCTGTATCAAGGGGACCTCTTCAGAGATACGGGCATTCTCTTGCCCTATATCAGgtatggttttttttcctgtcagctgggagaccttagtatacatatcttgc Alignment from Exonerate_coding2genome TTACAATTTAGAAAGCAGTATATGGAATGTAGGTGCTGTATCAAGGGGCCCTCTTCAGAGATACGGACATTCTCTTGCCCTCTATCAG ctcaaaggaagaagtttttatgctcatgatgagccgccctttctctacagTTACAATTTAGAAAGCAGTATATGGAATGTAGGCGCTGTATCAAGGGGACCTCTTCAGAGATACGGGCATTCTCTTGCCCTATATCAGgtatggttttttttcctgtcagctgggagaccttagtatacatatcttgc Alignment from GeneWise TTACAATTTAGAAAGCAGTATATGGAATGTAGGTGCTGTATCAAGGGGCCCTCTTCAGAGATACGGACATTCTCTTGCCCTCTATCAG ctcaaaggaagaagtttttatgctcatgatgagccgccctttctctacagTTACAATTTAGAAAGCAGTATATGGAATGTAGGCGCTGTATCAAGGGGACCTCTTCAGAGATACGGGCATTCTCTTGCCCTATATCAGgtatggttttttttcctgtcagctgggagaccttagtatacatatcttgc #### Atrnl1_ID12448_18 --> 2 - 1 Original Alignment ctCAAAATTGTTCTGGGTTAAGAACCTGTGGACAGTGCTTGGAGCAGCCTGGGTGTGGCTGGTGCAACGATCCTAGTAACACAGGAAGAGGCTATTGCATCGAAGGGTCTTCCCGGGGCCCAATGAAACTCGCGGGGGTCCACAACAGTGACGTGGTTCTTGACACCAGCCTCTGCCCCAAGGAGAAGAACTACGAGTGGTCTTTTATCCAGTGTCCAg tttgatgaagcttcaaaagcaacagaagactcaccccattcaccccacagctCAAAATTGTTCGGGATTAAGAAGCTGTGGACAGTGCTTGGAACAGTCAGGGTGTGGCTGGTGCAATGATTCACGCACCACAGGGAGGGGCTATTGCATTGAAGGGTCCTCTAGAGGCCCAATGAAACTTGCAGGCGTGCACAATAGTGATCTAGTTCTTGACACAAGTCTCTGTCCCAAAGAGAAGAACTATGATTGGTCCTTTATCCAGTGCTCAggtaggaacggcagtttatctactggtttgaactcagaagagcgtggatgt Alignment from CESAR ctCAAAATTGTTCTGGGTTAAGAACCTGTGGACAGTGCTTGGAGCAGCCTGGGTGTGGCTGGTGCAACGATCCTAGTAACACAGGAAGAGGCTATTGCATCGAAGGGTCTTCCCGGGGCCCAATGAAACTCGCGGGGGTCCACAACAGTGACGTGGTTCTTGACACCAGCCTCTGCCCCAAGGAGAAGAACTACGAGTGGTCTTTTATCCAGTGTCCAg tttgatgaagcttcaaaagcaacagaagactcaccccattcaccccacagctCAAAATTGTTCGGGATTAAGAAGCTGTGGACAGTGCTTGGAACAGTCAGGGTGTGGCTGGTGCAATGATTCACGCACCACAGGGAGGGGCTATTGCATTGAAGGGTCCTCTAGAGGCCCAATGAAACTTGCAGGCGTGCACAATAGTGATCTAGTTCTTGACACAAGTCTCTGTCCCAAAGAGAAGAACTATGATTGGTCCTTTATCCAGTGCTCAggtaggaacggcagtttatctactggtttgaactcagaagagcgtggatgt Alignment from Spaln_aa2Genome CTCAAAATTGTTCTGGGTTAAGAACCTGTGGACAGTGCTTGGAGCAGCCTGGGTGTGGCTGGTGCAACGATCCTAGTAACACAGGAAGAGGCTATTGCATCGAAGGGTCTTCCCGGGGCCCAATGAAACTCGCGGGGGTCCACAACAGTGACGTGGTTCTTGACACCAGCCTCTGCCCCAAGGAGAAGAACTACGAGTGGTCTTTTATCCAGTGTCCAG tttgatgaagcttcaaaagcaacagaagactcaccccattcaccccacagCTCAAAATTGTTCGGGATTAAGAAGCTGTGGACAGTGCTTGGAACAGTCAGGGTGTGGCTGGTGCAATGATTCACGCACCACAGGGAGGGGCTATTGCATTGAAGGGTCCTCTAGAGGCCCAATGAAACTTGCAGGCGTGCACAATAGTGATCTAGTTCTTGACACAAGTCTCTGTCCCAAAGAGAAGAACTATGATTGGTCCTTTATCCAGTGCTCAGgtaggaacggcagtttatctactggtttgaactcagaagagcgtggatgt Alignment from Spaln_nt2Genome CTCAAAATTGTTCTGGGTTAAGAACCTGTGGACAGTGCTTGGAGCAGCCTGGGTGTGGCTGGTGCAACGATCCTAGTAACACAGGAAGAGGCTATTGCATCGAAGGGTCTTCCCGGGGCCCAATGAAACTCGCGGGGGTCCACAACAGTGACGTGGTTCTTGACACCAGCCTCTGCCCCAAGGAGAAGAACTACGAGTGGTCTTTTATCCAGTGTCCAG tttgatgaagcttcaaaagcaacagaagactcaccccattcaccccacagCTCAAAATTGTTCGGGATTAAGAAGCTGTGGACAGTGCTTGGAACAGTCAGGGTGTGGCTGGTGCAATGATTCACGCACCACAGGGAGGGGCTATTGCATTGAAGGGTCCTCTAGAGGCCCAATGAAACTTGCAGGCGTGCACAATAGTGATCTAGTTCTTGACACAAGTCTCTGTCCCAAAGAGAAGAACTATGATTGGTCCTTTATCCAGTGCTCAGgtaggaacggcagtttatctactggtttgaactcagaagagcgtggatgt Alignment from Pairagon CTCAAAATTGTTCTGGGTTAAGAACCTGTGGACAGTGCTTGGAGCAGCCTGGGTGTGGCTGGTGCAACGATCCTAGTAACACAGGAAGAGGCTATTGCATCGAAGGGTCTTCCCGGGGCCCAATGAAACTCGCGGGGGTCCACAACAGTGACGTGGTTCTTGACACCAGCCTCTGCCCCAAGGAGAAGAACTACGAGTGGTCTTTTATCCAGTGTCCAG tttgatgaagcttcaaaagcaacagaagactcaccccattcaccccacagCTCAAAATTGTTCGGGATTAAGAAGCTGTGGACAGTGCTTGGAACAGTCAGGGTGTGGCTGGTGCAATGATTCACGCACCACAGGGAGGGGCTATTGCATTGAAGGGTCCTCTAGAGGCCCAATGAAACTTGCAGGCGTGCACAATAGTGATCTAGTTCTTGACACAAGTCTCTGTCCCAAAGAGAAGAACTATGATTGGTCCTTTATCCAGTGCTCAGgtaggaacggcagtttatctactggtttgaactcagaagagcgtggatgt Alignment from Exonerate_protein2genome CTCAAAATTGTTCTGGGTTAAGAACCTGTGGACAGTGCTTGGAGCAGCCTGGGTGTGGCTGGTGCAACGATCCTAGTAACACAGGAAGAGGCTATTGCATCGAAGGGTCTTCCCGGGGCCCAATGAAACTCGCGGGGGTCCACAACAGTGACGTGGTTCTTGACACCAGCCTCTGCCCCAAGGAGAAGAACTACGAGTGGTCTTTTATCCAGTGTCCAG tttgatgaagcttcaaaagcaacagaagactcaccccattcaccccacagCTCAAAATTGTTCGGGATTAAGAAGCTGTGGACAGTGCTTGGAACAGTCAGGGTGTGGCTGGTGCAATGATTCACGCACCACAGGGAGGGGCTATTGCATTGAAGGGTCCTCTAGAGGCCCAATGAAACTTGCAGGCGTGCACAATAGTGATCTAGTTCTTGACACAAGTCTCTGTCCCAAAGAGAAGAACTATGATTGGTCCTTTATCCAGTGCTCAGgtaggaacggcagtttatctactggtttgaactcagaagagcgtggatgt Alignment from Exonerate_coding2genome CTCAAAATTGTTCTGGGTTAAGAACCTGTGGACAGTGCTTGGAGCAGCCTGGGTGTGGCTGGTGCAACGATCCTAGTAACACAGGAAGAGGCTATTGCATCGAAGGGTCTTCCCGGGGCCCAATGAAACTCGCGGGGGTCCACAACAGTGACGTGGTTCTTGACACCAGCCTCTGCCCCAAGGAGAAGAACTACGAGTGGTCTTTTATCCAGTGTCCAG tttgatgaagcttcaaaagcaacagaagactcaccccattcaccccacagCTCAAAATTGTTCGGGATTAAGAAGCTGTGGACAGTGCTTGGAACAGTCAGGGTGTGGCTGGTGCAATGATTCACGCACCACAGGGAGGGGCTATTGCATTGAAGGGTCCTCTAGAGGCCCAATGAAACTTGCAGGCGTGCACAATAGTGATCTAGTTCTTGACACAAGTCTCTGTCCCAAAGAGAAGAACTATGATTGGTCCTTTATCCAGTGCTCAGgtaggaacggcagtttatctactggtttgaactcagaagagcgtggatgt Alignment from GeneWise CTCAAAATTGTTCTGGGTTAAGAACCTGTGGACAGTGCTTGGAGCAGCCTGGGTGTGGCTGGTGCAACGATCCTAGTAACACAGGAAGAGGCTATTGCATCGAAGGGTCTTCCCGGGGCCCAATGAAACTCGCGGGGGTCCACAACAGTGACGTGGTTCTTGACACCAGCCTCTGCCCCAAGGAGAAGAACTACGAGTGGTCTTTTATCCAGTGTCCAG tttgatgaagcttcaaaagcaacagaagactcaccccattcaccccacagCTCAAAATTGTTCGGGATTAAGAAGCTGTGGACAGTGCTTGGAACAGTCAGGGTGTGGCTGGTGCAATGATTCACGCACCACAGGGAGGGGCTATTGCATTGAAGGGTCCTCTAGAGGCCCAATGAAACTTGCAGGCGTGCACAATAGTGATCTAGTTCTTGACACAAGTCTCTGTCCCAAAGAGAAGAACTATGATTGGTCCTTTATCCAGTGCTCAGgtaggaacggcagtttatctactggtttgaactcagaagagcgtggatgt #### Atrnl1_ID12458_24 --> 2 - 0 Original Alignment gtGGAACCATATCTGGGGAAGAGACTCCTATAGTTTCTAAGACAAATATAAAGGAATACAGAGACAGCTTTTCCTATGAAAAATTTAACTTCAGAAGCAATCCTAATATCACATTTTATGTGTATGTCAGCAACTTCTCCTGGCCTATTAAAATACAG aagcttcatcctggtaatgctgtcacaagcaacttgttcttctgttttaggaGGGACCATATCCGGGGAAGAGACTCCCATAGTTTCTAAGACAAATATAAAGGAATACAGAGACAGTTTTTCCTATGAAAAATTTAACTTTAGAAGCAATCCTAACATCACATTTTATGTGTATGTCAGCAACTTCTCTTGGCCCATTAAAATACAGgtaatgatgtgtctttggtgatactccccatcttgatgatacaaaaattt Alignment from CESAR gtGGAACCATATCTGGGGAAGAGACTCCTATAGTTTCTAAGACAAATATAAAGGAATACAGAGACAGCTTTTCCTATGAAAAATTTAACTTCAGAAGCAATCCTAATATCACATTTTATGTGTATGTCAGCAACTTCTCCTGGCCTATTAAAATACAG aagcttcatcctggtaatgctgtcacaagcaacttgttcttctgttttaggaGGGACCATATCCGGGGAAGAGACTCCCATAGTTTCTAAGACAAATATAAAGGAATACAGAGACAGTTTTTCCTATGAAAAATTTAACTTTAGAAGCAATCCTAACATCACATTTTATGTGTATGTCAGCAACTTCTCTTGGCCCATTAAAATACAGgtaatgatgtgtctttggtgatactccccatcttgatgatacaaaaattt Alignment from Spaln_aa2Genome GTGGAACCATATCTGGGGAAGAGACTCCTATAGTTTCTAAGACAAATATAAAGGAATACAGAGACAGCTTTTCCTATGAAAAATTTAACTTCAGAAGCAATCCTAATATCACATTTTATGTGTATGTCAGCAACTTCTCCTGGCCTATTAAAATACAG aagcttcatcctggtaatgctgtcacaagcaacttgttcttctgttttagGAGGGACCATATCCGGGGAAGAGACTCCCATAGTTTCTAAGACAAATATAAAGGAATACAGAGACAGTTTTTCCTATGAAAAATTTAACTTTAGAAGCAATCCTAACATCACATTTTATGTGTATGTCAGCAACTTCTCTTGGCCCATTAAAATACAGgtaatgatgtgtctttggtgatactccccatcttgatgatacaaaaattt Alignment from Spaln_nt2Genome GTGGAACCATATCTGGGGAAGAGACTCCTATAGTTTCTAAGACAAATATAAAGGAATACAGAGACAGCTTTTCCTATGAAAAATTTAACTTCAGAAGCAATCCTAATATCACATTTTATGTGTATGTCAGCAACTTCTCCTGGCCTATTAAAATACAG aagcttcatcctggtaatgctgtcacaagcaacttgttcttctgttttagGAGGGACCATATCCGGGGAAGAGACTCCCATAGTTTCTAAGACAAATATAAAGGAATACAGAGACAGTTTTTCCTATGAAAAATTTAACTTTAGAAGCAATCCTAACATCACATTTTATGTGTATGTCAGCAACTTCTCTTGGCCCATTAAAATACAGgtaatgatgtgtctttggtgatactccccatcttgatgatacaaaaattt Alignment from Pairagon GTGGAACCATATCTGGGGAAGAGACTCCTATAGTTTCTAAGACAAATATAAAGGAATACAGAGACAGCTTTTCCTATGAAAAATTTAACTTCAGAAGCAATCCTAATATCACATTTTATGTGTATGTCAGCAACTTCTCCTGGCCTATTAAAATACAG aagcttcatcctggtaatgctgtcacaagcaacttgttcttctgttttagGAGGGACCATATCCGGGGAAGAGACTCCCATAGTTTCTAAGACAAATATAAAGGAATACAGAGACAGTTTTTCCTATGAAAAATTTAACTTTAGAAGCAATCCTAACATCACATTTTATGTGTATGTCAGCAACTTCTCTTGGCCCATTAAAATACAGgtaatgatgtgtctttggtgatactccccatcttgatgatacaaaaattt Alignment from Exonerate_protein2genome GTGGAACCATATCTGGGGAAGAGACTCCTATAGTTTCTAAGACAAATATAAAGGAATACAGAGACAGCTTTTCCTATGAAAAATTTAACTTCAGAAGCAATCCTAATATCACATTTTATGTGTATGTCAGCAACTTCTCCTGGCCTATTAAAATACAG aagcttcatcctggtaatgctgtcacaagcaacttgttcttctgttttagGAGGGACCATATCCGGGGAAGAGACTCCCATAGTTTCTAAGACAAATATAAAGGAATACAGAGACAGTTTTTCCTATGAAAAATTTAACTTTAGAAGCAATCCTAACATCACATTTTATGTGTATGTCAGCAACTTCTCTTGGCCCATTAAAATACAGgtaatgatgtgtctttggtgatactccccatcttgatgatacaaaaattt Alignment from Exonerate_coding2genome TGCTTCCAACAACTTTAATCTCAACATTACGTGGTCAGTTGGCTCAACAGGTGGAACCATATCTGGGGAAGAGACTCCTATAGTTTCTAAGACAAATATAAAGGAATACAGAGACAGCTTTTCCTATGAAAAATTTAACTTCAGAAGCAATCCTAATATCACATTTTATGTGTATGTCAGCAACTTCTCCTGGCCTATTAAAATACAG AAGCTTCATCCTGGTAATGCTGTCACAAGCAACTTGTTCTTCTGTTTTAGGAGGGACCATATCCGGGGAAGAGACTCCCATAGTTTCTAAGACAAATATAAAGGAATACAGAGACAGTTTTTCCTATGAAAAATTTAACTTTAGAAGCAATCCTAACATCACATTTTATGTGTATGTCAGCAACTTCTCTTGGCCCATTAAAATACAGgtaatgatgtgtctttggtgatactccccatcttgatgatacaaaaattt Alignment from GeneWise GTGGAACCATATCTGGGGAAGAGACTCCTATAGTTTCTAAGACAAATATAAAGGAATACAGAGACAGCTTTTCCTATGAAAAATTTAACTTCAGAAGCAATCCTAATATCACATTTTATGTGTATGTCAGCAACTTCTCCTGGCCTATTAAAATACAG aagcttcatcctggtaatgctgtcacaagcaacttgttcttctgttttagGAGGGACCATATCCGGGGAAGAGACTCCCATAGTTTCTAAGACAAATATAAAGGAATACAGAGACAGTTTTTCCTATGAAAAATTTAACTTTAGAAGCAATCCTAACATCACATTTTATGTGTATGTCAGCAACTTCTCTTGGCCCATTAAAATACAGgtaatgatgtgtctttggtgatactccccatcttgatgatacaaaaattt #### Atrnl1_ID12461_26 --> 1 - 0 Original Alignment tTGTTTTTTATCTTTACTGCTGGTGGCTGCTGTGGTCTGGAAGATCAAACAAACTTGCTGGGCTTCTCGTCGGAGGGAG aaaagagaatctatacgtggtggtcttcgattgaacttcctcaattccagtTGTTTTGTATCGTTACTTCTGGTAGATGCCGCAGTTTGG---ATCAAAGAAACTTGTTGGCCATCCCATCGGAGAGACgtgagttgaaaccattgtaaaaggtctttttgaagatcaatagatgtgcc Alignment from CESAR tTGTTTTTTATCTTTACTGCTGGTGGCTGCTGTGGTCTGGAAGATCAAACAAACTTGCTGGGCTTCTCGTCGGAGGGAG aaaagagaatctatacgtggtggtcttcgattgaacttcctcaattccagtTGTTTTGTATCGTTACTTCTGGTAGATGCCGCAGTTTGG---ATCAAAGAAACTTGTTGGCCATCCCATCGGAGAGACgtgagttgaaaccattgtaaaaggtctttttgaagatcaatagatgtgcc Alignment from Spaln_aa2Genome TTGTTTTTTATCTTTACTGCTGGTGGCTGCTGTGGTCTGGAAGATCAAACAAACTTGCTGGGCTTCTCGTCGGAGGGAG aaaagagaatctatacgtggtggtcttcgattgaacttcctcaattccagTTGTTTTGTATCGTTACTTCTGGTAGATGCCGCAGTTTGG---ATCAAAGAAACTTGTTGGCCATCCCATCGGAGAGACgtgagttgaaaccattgtaaaaggtctttttgaagatcaatagatgtgcc Alignment from Spaln_nt2Genome TTGTTTTTTATCTTTACTGCTGGTGGCTGCTGTGGTCTGGAAGATCAAACAAACTTGCTGGGCTTCTCGTCGGAGGGAG aaaagagaatctatacgtggtggtcttcgattgaacttcctcaattccagTTGTTTTGTATCGTTACTTCTGGTAGATGCCGCAGTTTG---GATCAAAGAAACTTGTTGGCCATCCCATCGGAGAGACgtgagttgaaaccattgtaaaaggtctttttgaagatcaatagatgtgcc Alignment from Pairagon TTGTTTTTTATCTTTACTGCTGGTGGCTGCTGTGGTCTGGAAGATCAAACAAACTTGCTGGGCTTCTCGTCGGAGGGAG aaaagagaatctatacgtggtggtcttcgattgaacttcctcaattccagTTGTTTTGTATCGTTACTTCTGGTAGATGCCGCAGTTTG---GATCAAAGAAACTTGTTGGCCATCCCATCGGAGAGACgtgagttgaaaccattgtaaaaggtctttttgaagatcaatagatgtgcc Alignment from Exonerate_protein2genome TTGTTTTTTATCTTTACTGCTGGTGGCTGCTGTGGTCTGGAAGATCAAACAAACTTGCTGGGCTTCTCGTCGGAGGGAG aaaagagaatctatacgtggtggtcttcgattgaacttcctcaattccagTTGTTTTGTATCGTTACTTCTGGTAGATGCCGCAGTTTGG---ATCAAAGAAACTTGTTGGCCATCCCATCGGAGAGACgtgagttgaaaccattgtaaaaggtctttttgaagatcaatagatgtgcc Alignment from Exonerate_coding2genome aaaagagaatctatacgtggtggtcttcgattgaacttcctcaattccagttgttttgtatcgttacttctggtagatgccgcagtttggatcaaagaaacttgttggccatcccatcggagagacgtgagttgaaaccattgtaaaaggtctttttgaagatcaatagatgtgcc Alignment from GeneWise TTGTTTTTTATCTTTACTGCTGGTGGCTGCTGTGGTCTGGAAGATCAAACAAACTTGCTGGGCTTCTCGTCGGAGGGAG aaaagagaatctatacgtggtggtcttcgattgaacttcctcaattccagTTGTTTTGTATCGTTACTTCTGGTAGATGCCGCAGTTTGG---ATCAAAGAAACTTGTTGGCCATCCCATCGGAGAGACgtgagttgaaaccattgtaaaaggtctttttgaagatcaatagatgtgcc #### B3gat3_ID2490_2 --> 2 - 2 Original Alignment gcCAGCCTTGCGACTGCCTCCCTCCGCTTCGAGCTGCAGCTGAGCAGCTTCGGCAGAAGGACCTGAGGATATCCCAGTTGCAAGCTGATCTCCGTCGCCCACCCCCTGTCCCAGCCCAGCCCCCTGAACCTGAGGCCCTGCCTACTATCTATGTCATTACCCCCACCTACGCCag atgctgtggccccgagcagttttttgccattcagtgttcttggtttctaggaCAGCCTTGTGACTGTCTCCCCCCACTGCGGGCTGCGACTGAGCAGCTTCGGCAGAAAGATCTGAGGATATCCCAGCTGCAAGCAGATATCCGCCGTCCACCTCCTGTACCAGCCCAGCCCCCTGAACCCGAGGCACTGCCCATGATATATGTCATCACACCC---AATGCAaggtatttctaaagtactagtcatctgcaactgtaagaaggttgaggatgaa Alignment from CESAR gcCAGCCTTGCGACTGCCTCCCTCCGCTTCGAGCTGCAGCTGAGCAGCTTCGGCAGAAGGACCTGAGGATATCCCAGTTGCAAGCTGATCTCCGTCGCCCACCCCCTGTCCCAGCCCAGCCCCCTGAACCTGAGGCCCTGCCTACTATCTATGTCATTACCCCCACCTACGCCag atgctgtggccccgagcagttttttgccattcagtgttcttggtttctaggaCAGCCTTGTGACTGTCTCCCCCCACTGCGGGCTGCGACTGAGCAGCTTCGGCAGAAAGATCTGAGGATATCCCAGCTGCAAGCAGATATCCGCCGTCCACCTCCTGTACCAGCCCAGCCCCCTGAACCCGAGGCACTGCCCATGATATATGTCATCACACCCAAT---GCAaggtatttctaaagtactagtcatctgcaactgtaagaaggttgaggatgaa Alignment from Spaln_aa2Genome GCCAGCCTTGCGACTGCCTCCCTCCGCTTCGAGCTGCAGCTGAGCAGCTTCGGCAGAAGGACCTGAGGATATCCCAGTTGCAAGCTGATCTCCGTCGCCCACCCCCTGTCCCAGCCCAGCCCCCTGAACCTGAGGCCCTGCCTACTATCTATGTCATTACCCCCACCTACGCCAG atgctgtggccccgagcagttttttgccattcagtgttcttggtttctagGACAGCCTTGTGACTGTCTCCCCCCACTGCGGGCTGCGACTGAGCAGCTTCGGCAGAAAGATCTGAGGATATCCCAGCTGCAAGCAGATATCCGCCGTCCACCTCCTGTACCAGCCCAGCCCCCTGAACCCGAGGCACTGCCCATGATATATGTCATCACACCCAAT---GCAAGgtatttctaaagtactagtcatctgcaactgtaagaaggttgaggatgaa Alignment from Spaln_nt2Genome GCCAGCCTTGCGACTGCCTCCCTCCGCTTCGAGCTGCAGCTGAGCAGCTTCGGCAGAAGGACCTGAGGATATCCCAGTTGCAAGCTGATCTCCGTCGCCCACCCCCTGTCCCAGCCCAGCCCCCTGAACCTGAGGCCCTGCCTACTATCTATGTCATTACCCCCACCTACGCCAG atgctgtggccccgagcagttttttgccattcagtgttcttggtttctagGACAGCCTTGTGACTGTCTCCCCCCACTGCGGGCTGCGACTGAGCAGCTTCGGCAGAAAGATCTGAGGATATCCCAGCTGCAAGCAGATATCCGCCGTCCACCTCCTGTACCAGCCCAGCCCCCTGAACCCGAGGCACTGCCCATGATATATGTCATCACACCCA---ATGCAAGgtatttctaaagtactagtcatctgcaactgtaagaaggttgaggatgaa Alignment from Pairagon GCCAGCCTTGCGACTGCCTCCCTCCGCTTCGAGCTGCAGCTGAGCAGCTTCGGCAGAAGGACCTGAGGATATCCCAGTTGCAAGCTGATCTCCGTCGCCCACCCCCTGTCCCAGCCCAGCCCCCTGAACCTGAGGCCCTGCCTACTATCTATGTCATTACCCCCA------------------------------------- atgctgtggccccgagcagttttttgccattcagtgttcttggtttctagGACAGCCTTGTGACTGTCTCCCCCCACTGCGGGCTGCGACTGAGCAGCTTCGGCAGAAAGATCTGAGGATATCCCAGCTGCAAGCAGATATCCGCCGTCCACCTCCTGTACCAGCCCAGCCCCCTGAACCCGAGGCACTGCCCATGATATATGTCATCACACCCAATGCAAGGTATTTCTAAAGTACTAGTCATCTGCAACTgtaagaaggttgaggatgaa Alignment from Exonerate_protein2genome GCCAGCCTTGCGACTGCCTCCCTCCGCTTCGAGCTGCAGCTGAGCAGCTTCGGCAGAAGGACCTGAGGATATCCCAGTTGCAAGCTGATCTCCGTCGCCCACCCCCTGTCCCAGCCCAGCCCCCTGAACCTGAGGCCCTGCCTACTATCTATGTCATTACCCCCACCTACGC atgctgtggccccgagcagttttttgccattcagtgttcttggtttctagGACAGCCTTGTGACTGTCTCCCCCCACTGCGGGCTGCGACTGAGCAGCTTCGGCAGAAAGATCTGAGGATATCCCAGCTGCAAGCAGATATCCGCCGTCCACCTCCTGTACCAGCCCAGCCCCCTGAACCCGAGGCACTGCCCATGATATATGTCATCACACCCAATGCAAGgtatttctaaagtactagtcatctgcaactgtaagaaggttgaggatgaa Alignment from Exonerate_coding2genome GCCAGCCTTGCGACTGCCTCCCTCCGCTTCGAGCTGCAGCTGAGCAGCTTCGGCAGAAGGACCTGAGGATATCCCAGTTGCAAGCTGATCTCCGTCGCCCACCCCCTGTCCCAGCCCAGCCCCCTGAACCTGAGGCCCTGCCTACTATCTATGTCATTACCCCCACCTACGC atgctgtggccccgagcagttttttgccattcagtgttcttggtttctagGACAGCCTTGTGACTGTCTCCCCCCACTGCGGGCTGCGACTGAGCAGCTTCGGCAGAAAGATCTGAGGATATCCCAGCTGCAAGCAGATATCCGCCGTCCACCTCCTGTACCAGCCCAGCCCCCTGAACCCGAGGCACTGCCCATGATATATGTCATCACACCCAATGCAAGgtatttctaaagtactagtcatctgcaactgtaagaaggttgaggatgaa Alignment from GeneWise GCCAGCCTTGCGACTGCCTCCCTCCGCTTCGAGCTGCAGCTGAGCAGCTTCGGCAGAAGGACCTGAGGATATCCCAGTTGCAAGCTGATCTCCGTCGCCCACCCCCTGTCCCAGCCCAGCCCCCTGAACCTGAGGCCCTGCCTACTATCTATGTCATTACCCCCACCTACGCCAG atgctgtggccccgagcagttttttgccattcagtgttcttggtttctagGACAGCCTTGTGACTGTCTCCCCCCACTGCGGGCTGCGACTGAGCAGCTTCGGCAGAAAGATCTGAGGATATCCCAGCTGCAAGCAGATATCCGCCGTCCACCTCCTGTACCAGCCCAGCCCCCTGAACCCGAGGCACTGCCCATGATATATGTCATCACACCCAAT---GCAAGgtatttctaaagtactagtcatctgcaactgtaagaaggttgaggatgaa #### BC048609_ID1423_2 --> 0 - 1 Original Alignment TTCTCCCAGGTGATCAGCATCGGCTGGGCTGCCATGGGGTCACTCTACGCAGAGATGACCGGTGACAAGTTTCTTAGATGCTTTGCTTTGACCATTCTGa tactattatagtgcacccatgaagtatccctccccccttttctctctcagTTCTCTCAAGTAATCAGTATTGGTTGGGCTACCATGGGACCACTGTACCAGGAGATGACTGGTGACAAGTTTCTTAGATGCTTTGCACTGACCATCCTTagtactaggaggcatgaagcatgaagggggagcattgattcactaccttta Alignment from CESAR TTCTCCCAGGTGATCAGCATCGGCTGGGCTGCCATGGGGTCACTCTACGCAGAGATGACCGGTGACAAGTTTCTTAGATGCTTTGCTTTGACCATTCTGa tactattatagtgcacccatgaagtatccctccccccttttctctctcagTTCTCTCAAGTAATCAGTATTGGTTGGGCTACCATGGGACCACTGTACCAGGAGATGACTGGTGACAAGTTTCTTAGATGCTTTGCACTGACCATCCTTagtactaggaggcatgaagcatgaagggggagcattgattcactaccttta Alignment from Spaln_aa2Genome TTCTCCCAGGTGATCAGCATCGGCTGGGCTGCCATGGGGTCACTCTACGCAGAGATGACCGGTGACAAGTTTCTTAGATGCTTTGCTTTGACCATTCTGA tactattatagtgcacccatgaagtatccctccccccttttctctctcagTTCTCTCAAGTAATCAGTATTGGTTGGGCTACCATGGGACCACTGTACCAGGAGATGACTGGTGACAAGTTTCTTAGATGCTTTGCACTGACCATCCTTAgtactaggaggcatgaagcatgaagggggagcattgattcactaccttta Alignment from Spaln_nt2Genome TTCTCCCAGGTGATCAGCATCGGCTGGGCTGCCATGGGGTCACTCTACGCAGAGATGACCGGTGACAAGTTTCTTAGATGCTTTGCTTTGACCATTCTGA tactattatagtgcacccatgaagtatccctccccccttttctctctcagTTCTCTCAAGTAATCAGTATTGGTTGGGCTACCATGGGACCACTGTACCAGGAGATGACTGGTGACAAGTTTCTTAGATGCTTTGCACTGACCATCCTTAgtactaggaggcatgaagcatgaagggggagcattgattcactaccttta Alignment from Pairagon TTCTCCCAGGTGATCAGCATCGGCTGGGCTGCCATGGGGTCACTCTACGCAGAGATGACCGGTGACAAGTTTCTTAGATGCTTTGCTTTGACCATTCTGA tactattatagtgcacccatgaagtatccctccccccttttctctctcagTTCTCTCAAGTAATCAGTATTGGTTGGGCTACCATGGGACCACTGTACCAGGAGATGACTGGTGACAAGTTTCTTAGATGCTTTGCACTGACCATCCTTAgtactaggaggcatgaagcatgaagggggagcattgattcactaccttta Alignment from Exonerate_protein2genome TTCTCCCAGGTGATCAGCATCGGCTGGGCTGCCATGGGGTCACTCTACGCAGAGATGACCGGTGACAAGTTTCTTAGATGCTTTGCTTTGACCATTCTGA tactattatagtgcacccatgaagtatccctccccccttttctctctcagTTCTCTCAAGTAATCAGTATTGGTTGGGCTACCATGGGACCACTGTACCAGGAGATGACTGGTGACAAGTTTCTTAGATGCTTTGCACTGACCATCCTTAgtactaggaggcatgaagcatgaagggggagcattgattcactaccttta Alignment from Exonerate_coding2genome TTCTCCCAGGTGATCAGCATCGGCTGGGCTGCCATGGGGTCACTCTACGCAGAGATGACCGGTGACAAGTTTCTTAGATGCTTTGCTTTGACCATTCTGA tactattatagtgcacccatgaagtatccctccccccttttctctctcagTTCTCTCAAGTAATCAGTATTGGTTGGGCTACCATGGGACCACTGTACCAGGAGATGACTGGTGACAAGTTTCTTAGATGCTTTGCACTGACCATCCTTAgtactaggaggcatgaagcatgaagggggagcattgattcactaccttta Alignment from GeneWise TTCTCCCAGGTGATCAGCATCGGCTGGGCTGCCATGGGGTCACTCTACGCAGAGATGACCGGTGACAAGTTTCTTAGATGCTTTGCTTTGACCATTCTGA tactattatagtgcacccatgaagtatccctccccccttttctctctcagTTCTCTCAAGTAATCAGTATTGGTTGGGCTACCATGGGACCACTGTACCAGGAGATGACTGGTGACAAGTTTCTTAGATGCTTTGCACTGACCATCCTTAgtactaggaggcatgaagcatgaagggggagcattgattcactaccttta #### BC049760_ID1439_4 --> 1 - 0 Original Alignment gCTTGAGGAATCACTGTACGCTAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTAGAGAACTTG gggtgaagattatgtgtgcacacttacgccctgcctcacgtctcttccaggCTTGAGGAATCACTGTATCCAAATCAACGGGACAACCTGGCCCTTGAAGAAAAGCTTGATAACTTGgtaagttcctctacccttcactttggttcttctcccccattttccttgcc Alignment from CESAR gCTTGAGGAATCACTGTACGCTAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTAGAGAACTTG gggtgaagattatgtgtgcacacttacgccctgcctcacgtctcttccaggCTTGAGGAATCACTGTATCCAAATCAACGGGACAACCTGGCCCTTGAAGAAAAGCTTGATAACTTGgtaagttcctctacccttcactttggttcttctcccccattttccttgcc Alignment from Spaln_aa2Genome GCTTGAGGAATCACTGTACGCTAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTAGAGAACTTG gggtgaagattatgtgtgcacacttacgccctgcctcacgtctcttccagGCTTGAGGAATCACTGTATCCAAATCAACGGGACAACCTGGCCCTTGAAGAAAAGCTTGATAACTTGgtaagttcctctacccttcactttggttcttctcccccattttccttgcc Alignment from Spaln_nt2Genome GCTTGAGGAATCACTGTACGCTAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTAGAGAACTTG gggtgaagattatgtgtgcacacttacgccctgcctcacgtctcttccagGCTTGAGGAATCACTGTATCCAAATCAACGGGACAACCTGGCCCTTGAAGAAAAGCTTGATAACTTGgtaagttcctctacccttcactttggttcttctcccccattttccttgcc Alignment from Pairagon GCTTGAGGAATCACTGTACGCTAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTAGAGAACTTG gggtgaagattatgtgtgcacacttacgccctgcctcacgtctcttccagGCTTGAGGAATCACTGTATCCAAATCAACGGGACAACCTGGCCCTTGAAGAAAAGCTTGATAACTTGgtaagttcctctacccttcactttggttcttctcccccattttccttgcc Alignment from Exonerate_protein2genome GCTTGAGGAATCACTGTACGCTAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTAGAGAACTTG gggtgaagattatgtgtgcacacttacgccctgcctcacgtctcttccagGCTTGAGGAATCACTGTATCCAAATCAACGGGACAACCTGGCCCTTGAAGAAAAGCTTGATAACTTGgtaagttcctctacccttcactttggttcttctcccccattttccttgcc Alignment from Exonerate_coding2genome GCTTGAGGAATCACTGTACGCTAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTAGAGAACTTG gggtgaagattatgtgtgcacacttacgccctgcctcacgtctcttccagGCTTGAGGAATCACTGTATCCAAATCAACGGGACAACCTGGCCCTTGAAGAAAAGCTTGATAACTTGgtaagttcctctacccttcactttggttcttctcccccattttccttgcc Alignment from GeneWise GCTTGAGGAATCACTGTACGCTAACCAAAGGGAAAACCTGGCCCTTGAAGAAAAGCTAGAGAACTTG gggtgaagattatgtgtgcacacttacgccctgcctcacgtctcttccagGCTTGAGGAATCACTGTATCCAAATCAACGGGACAACCTGGCCCTTGAAGAAAAGCTTGATAACTTGgtaagttcctctacccttcactttggttcttctcccccattttccttgcc #### Bad_ID1894_2 --> 2 - 1 Original Alignment ccCAGAGTATGTTCCAGATCCCAGAGTTTGAGCCGAGTGAGCAGGAAGACGCTAGTGCTACAGATAGGGGCCTGGGCCCTAGCCTCACTGAGGACCAGCCAGGTCCCTACCTGGCCCCAGGTCTCCTGGGGAGCAACATTCATCAGCAGGGACGGGCAGCCACCAACAGTCATCATGGAg aactgccaacctcctattaagttagatatttttttttttccatttataagctCAAAGCATGTCCCAAATCCCAGAGTTTGAGCCAAGTGAGCAGGAAGATGCCAGTGCTACAGGTAGAGGCTTAGGCCCTAGCCTAACTGAAGGCCAGCCAGGTCCCTACCTGGTCTCAGGCCTCTTAGGGAGCAACATTCGTCAGCTGGGTCATACAGCAACAAACAGCCCGCATGGAggtaaggtgcttgtaactattatctctctatatgtcataagacttcttttg Alignment from CESAR ccCAGAGTATGTTCCAGATCCCAGAGTTTGAGCCGAGTGAGCAGGAAGACGCTAGTGCTACAGATAGGGGCCTGGGCCCTAGCCTCACTGAGGACCAGCCAGGTCCCTACCTGGCCCCAGGTCTCCTGGGGAGCAACATTCATCAGCAGGGACGGGCAGCCACCAACAGTCATCATGGAg aactgccaacctcctattaagttagatatttttttttttccatttataagctCAAAGCATGTCCCAAATCCCAGAGTTTGAGCCAAGTGAGCAGGAAGATGCCAGTGCTACAGGTAGAGGCTTAGGCCCTAGCCTAACTGAAGGCCAGCCAGGTCCCTACCTGGTCTCAGGCCTCTTAGGGAGCAACATTCGTCAGCTGGGTCATACAGCAACAAACAGCCCGCATGGAggtaaggtgcttgtaactattatctctctatatgtcataagacttcttttg Alignment from Spaln_aa2Genome CCCAGAGTATGTTCCAGATCCCAGAGTTTGAGCCGAGTGAGCAGGAAGACGCTAGTGCTACAGATAGGGGCCTGGGCCCTAGCCTCACTGAGGACCAGCCAGGTCCCTACCTGGCCCCAGGTCTCCTGGGGAGCAACATTCATCAGCAGGGACGGGCAGCCACCAACAGTCATCATGGAG aactgccaacctcctattaagttagatatttttttttttccatttataagCTCAAAGCATGTCCCAAATCCCAGAGTTTGAGCCAAGTGAGCAGGAAGATGCCAGTGCTACAGGTAGAGGCTTAGGCCCTAGCCTAACTGAAGGCCAGCCAGGTCCCTACCTGGTCTCAGGCCTCTTAGGGAGCAACATTCGTCAGCTGGGTCATACAGCAACAAACAGCCCGCATGGAGgtaaggtgcttgtaactattatctctctatatgtcataagacttcttttg Alignment from Spaln_nt2Genome CCCAGAGTATGTTCCAGATCCCAGAGTTTGAGCCGAGTGAGCAGGAAGACGCTAGTGCTACAGATAGGGGCCTGGGCCCTAGCCTCACTGAGGACCAGCCAGGTCCCTACCTGGCCCCAGGTCTCCTGGGGAGCAACATTCATCAGCAGGGACGGGCAGCCACCAACAGTCATCATGGAG aactgccaacctcctattaagttagatatttttttttttccatttataagCTCAAAGCATGTCCCAAATCCCAGAGTTTGAGCCAAGTGAGCAGGAAGATGCCAGTGCTACAGGTAGAGGCTTAGGCCCTAGCCTAACTGAAGGCCAGCCAGGTCCCTACCTGGTCTCAGGCCTCTTAGGGAGCAACATTCGTCAGCTGGGTCATACAGCAACAAACAGCCCGCATGGAGgtaaggtgcttgtaactattatctctctatatgtcataagacttcttttg Alignment from Pairagon CCCAGAGTATGTTCCAGATCCCAGAGTTTGAGCCGAGTGAGCAGGAAGACGCTAGTGCTACAGATAGGGGCCTGGGCCCTAGCCTCACTGAGGACCAGCCAGGTCCCTACCTGGCCCCAGGTCTCCTGGGGAGCAACATTCATCAGCAGGGACGGGCAGCCACCAACAGTCATCATGGAG aactgccaacctcctattaagttagatatttttttttttccatttataagCTCAAAGCATGTCCCAAATCCCAGAGTTTGAGCCAAGTGAGCAGGAAGATGCCAGTGCTACAGGTAGAGGCTTAGGCCCTAGCCTAACTGAAGGCCAGCCAGGTCCCTACCTGGTCTCAGGCCTCTTAGGGAGCAACATTCGTCAGCTGGGTCATACAGCAACAAACAGCCCGCATGGAGgtaaggtgcttgtaactattatctctctatatgtcataagacttcttttg Alignment from Exonerate_protein2genome CCCAGAGTATGTTCCAGATCCCAGAGTTTGAGCCGAGTGAGCAGGAAGACGCTAGTGCTACAGATAGGGGCCTGGGCCCTAGCCTCACTGAGGACCAGCCAGGTCCCTACCTGGCCCCAGGTCTCCTGGGGAGCAACATTCATCAGCAGGGACGGGCAGCCACCAACAGTCATCATGGAG aactgccaacctcctattaagttagatatttttttttttccatttataagCTCAAAGCATGTCCCAAATCCCAGAGTTTGAGCCAAGTGAGCAGGAAGATGCCAGTGCTACAGGTAGAGGCTTAGGCCCTAGCCTAACTGAAGGCCAGCCAGGTCCCTACCTGGTCTCAGGCCTCTTAGGGAGCAACATTCGTCAGCTGGGTCATACAGCAACAAACAGCCCGCATGGAGgtaaggtgcttgtaactattatctctctatatgtcataagacttcttttg Alignment from Exonerate_coding2genome CCCAGAGTATGTTCCAGATCCCAGAGTTTGAGCCGAGTGAGCAGGAAGACGCTAGTGCTACAGATAGGGGCCTGGGCCCTAGCCTCACTGAGGACCAGCCAGGTCCCTACCTGGCCCCAGGTCTCCTGGGGAGCAACATTCATCAGCAGGGACGGGCAGCCACCAACAGTCATCATGGAG aactgccaacctcctattaagttagatatttttttttttccatttataagCTCAAAGCATGTCCCAAATCCCAGAGTTTGAGCCAAGTGAGCAGGAAGATGCCAGTGCTACAGGTAGAGGCTTAGGCCCTAGCCTAACTGAAGGCCAGCCAGGTCCCTACCTGGTCTCAGGCCTCTTAGGGAGCAACATTCGTCAGCTGGGTCATACAGCAACAAACAGCCCGCATGGAGgtaaggtgcttgtaactattatctctctatatgtcataagacttcttttg Alignment from GeneWise CCCAGAGTATGTTCCAGATCCCAGAGTTTGAGCCGAGTGAGCAGGAAGACGCTAGTGCTACAGATAGGGGCCTGGGCCCTAGCCTCACTGAGGACCAGCCAGGTCCCTACCTGGCCCCAGGTCTCCTGGGGAGCAACATTCATCAGCAGGGACGGGCAGCCACCAACAGTCATCATGGAG aactgccaacctcctattaagttagatatttttttttttccatttataagCTCAAAGCATGTCCCAAATCCCAGAGTTTGAGCCAAGTGAGCAGGAAGATGCCAGTGCTACAGGTAGAGGCTTAGGCCCTAGCCTAACTGAAGGCCAGCCAGGTCCCTACCTGGTCTCAGGCCTCTTAGGGAGCAACATTCGTCAGCTGGGTCATACAGCAACAAACAGCCCGCATGGAGgtaaggtgcttgtaactattatctctctatatgtcataagacttcttttg #### Bbs1_ID718_16 --> 0 - 0 Original Alignment GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gaagctaggcttctaactttagctgtgggtgtgtgtgggtgtctcctcagGTTCCCCTGCTGGTACCAGGACTCAGTTATCCGCTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagagagtacctgcatgacacccggatccaagtagcaacaattagatg Alignment from CESAR GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gaagctaggcttctaactttagctgtgggtgtgtgtgggtgtctcctcagGTTCCCCTGCTGGTACCAGGACTCAGTTATCCGCTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagagagtacctgcatgacacccggatccaagtagcaacaattagatg Alignment from Spaln_aa2Genome GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gaagctaggcttctaactttagctgtgggtgtgtgtgggtgtctcctcagGTTCCCCTGCTGGTACCAGGACTCAGTTATCCGCTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagagagtacctgcatgacacccggatccaagtagcaacaattagatg Alignment from Spaln_nt2Genome GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gaagctaggcttctaactttagctgtgggtgtgtgtgggtgtctcctcagGTTCCCCTGCTGGTACCAGGACTCAGTTATCCGCTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagagagtacctgcatgacacccggatccaagtagcaacaattagatg Alignment from Pairagon GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gaagctaggcttctaactttagctgtgggtgtgtgtgggtgtctcctcagGTTCCCCTGCTGGTACCAGGACTCAGTTATCCGCTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagagagtacctgcatgacacccggatccaagtagcaacaattagatg Alignment from Exonerate_protein2genome GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gaagctaggcttctaactttagctgtgggtgtgtgtgggtgtctcctcagGTTCCCCTGCTGGTACCAGGACTCAGTTATCCGCTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagagagtacctgcatgacacccggatccaagtagcaacaattagatg Alignment from Exonerate_coding2genome GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gaagctaggcttctaactttagctgtgggtgtgtgtgggtgtctcctcagGTTCCCCTGCTGGTACCAGGACTCAGTTATCCGCTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagagagtacctgcatgacacccggatccaagtagcaacaattagatg Alignment from GeneWise GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gaagctaggcttctaactttagctgtgggtgtgtgtgggtgtctcctcagGTTCCCCTGCTGGTACCAGGACTCAGTTATCCGCTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagagagtacctgcatgacacccggatccaagtagcaacaattagatg #### Bbs1_ID720_14 --> 2 - 0 Original Alignment ccATGCACCGGACCTTCCAGACCGACCTCTACCTGCTGCGCCTGCGAGCTGCCAGAGCCTATGTCCAGGCCCTGGAGTCCAGCCTGAGCCCCATGTCAACCACAGCTCGCGAGCCCCTCAAGCTGCATGCTGTG tgcacataagatacagggagtggtaagacacaatcattttcttttcctagcaATGCATCAGACATACCAGGCTGATCTCTACTTTCTGTGCTTGAGGACTGTCCAAGCTTATGTACAAGCATTGGAATCCAGCTTGTGCCCAATGTCCACCACAGCTCGTCAGCCCCTCAAGCTGCATGCAGTTgtgagtcatgaactgtagcacattgagtttgaggtgtgtgggactagaga Alignment from CESAR ccATGCACCGGACCTTCCAGACCGACCTCTACCTGCTGCGCCTGCGAGCTGCCAGAGCCTATGTCCAGGCCCTGGAGTCCAGCCTGAGCCCCATGTCAACCACAGCTCGCGAGCCCCTCAAGCTGCATGCTGTG tgcacataagatacagggagtggtaagacacaatcattttcttttcctagcaATGCATCAGACATACCAGGCTGATCTCTACTTTCTGTGCTTGAGGACTGTCCAAGCTTATGTACAAGCATTGGAATCCAGCTTGTGCCCAATGTCCACCACAGCTCGTCAGCCCCTCAAGCTGCATGCAGTTgtgagtcatgaactgtagcacattgagtttgaggtgtgtgggactagaga Alignment from Spaln_aa2Genome CCATGCACCGGACCTTCCAGACCGACCTCTACCTGCTGCGCCTGCGAGCTGCCAGAGCCTATGTCCAGGCCCTGGAGTCCAGCCTGAGCCCCATGTCAACCACAGCTCGCGAGCCCCTCAAGCTGCATGCTGTG tgcacataagatacagggagtggtaagacacaatcattttcttttcctagCAATGCATCAGACATACCAGGCTGATCTCTACTTTCTGTGCTTGAGGACTGTCCAAGCTTATGTACAAGCATTGGAATCCAGCTTGTGCCCAATGTCCACCACAGCTCGTCAGCCCCTCAAGCTGCATGCAGTTgtgagtcatgaactgtagcacattgagtttgaggtgtgtgggactagaga Alignment from Spaln_nt2Genome CCATGCACCGGACCTTCCAGACCGACCTCTACCTGCTGCGCCTGCGAGCTGCCAGAGCCTATGTCCAGGCCCTGGAGTCCAGCCTGAGCCCCATGTCAACCACAGCTCGCGAGCCCCTCAAGCTGCATGCTGTG tgcacataagatacagggagtggtaagacacaatcattttcttttcctagCAATGCATCAGACATACCAGGCTGATCTCTACTTTCTGTGCTTGAGGACTGTCCAAGCTTATGTACAAGCATTGGAATCCAGCTTGTGCCCAATGTCCACCACAGCTCGTCAGCCCCTCAAGCTGCATGCAGTTgtgagtcatgaactgtagcacattgagtttgaggtgtgtgggactagaga Alignment from Pairagon CCATGCACCGGACCTTCCAGACCGACCTCTACCTGCTGCGCCTGCGAGCTGCCAGAGCCTATGTCCAGGCCCTGGAGTCCAGCCTGAGCCCCATGTCAACCACAGCTCGCGAGCCCCTCAAGCTGCATGCTGTG tgcacataagatacagggagtggtaagacacaatcattttcttttcctagCAATGCATCAGACATACCAGGCTGATCTCTACTTTCTGTGCTTGAGGACTGTCCAAGCTTATGTACAAGCATTGGAATCCAGCTTGTGCCCAATGTCCACCACAGCTCGTCAGCCCCTCAAGCTGCATGCAGTTgtgagtcatgaactgtagcacattgagtttgaggtgtgtgggactagaga Alignment from Exonerate_protein2genome CCATGCACCGGACCTTCCAGACCGACCTCTACCTGCTGCGCCTGCGAGCTGCCAGAGCCTATGTCCAGGCCCTGGAGTCCAGCCTGAGCCCCATGTCAACCACAGCTCGCGAGCCCCTCAAGCTGCATGCTGTG tgcacataagatacagggagtggtaagacacaatcattttcttttcctagCAATGCATCAGACATACCAGGCTGATCTCTACTTTCTGTGCTTGAGGACTGTCCAAGCTTATGTACAAGCATTGGAATCCAGCTTGTGCCCAATGTCCACCACAGCTCGTCAGCCCCTCAAGCTGCATGCAGTTgtgagtcatgaactgtagcacattgagtttgaggtgtgtgggactagaga Alignment from Exonerate_coding2genome CCATGCACCGGACCTTCCAGACCGACCTCTACCTGCTGCGCCTGCGAGCTGCCAGAGCCTATGTCCAGGCCCTGGAGTCCAGCCTGAGCCCCATGTCAACCACAGCTCGCGAGCCCCTCAAGCTGCATGCTGTG tgcacataagatacagggagtggtaagacacaatcattttcttttcctagCAATGCATCAGACATACCAGGCTGATCTCTACTTTCTGTGCTTGAGGACTGTCCAAGCTTATGTACAAGCATTGGAATCCAGCTTGTGCCCAATGTCCACCACAGCTCGTCAGCCCCTCAAGCTGCATGCAGTTgtgagtcatgaactgtagcacattgagtttgaggtgtgtgggactagaga Alignment from GeneWise CCATGCACCGGACCTTCCAGACCGACCTCTACCTGCTGCGCCTGCGAGCTGCCAGAGCCTATGTCCAGGCCCTGGAGTCCAGCCTGAGCCCCATGTCAACCACAGCTCGCGAGCCCCTCAAGCTGCATGCTGTG tgcacataagatacagggagtggtaagacacaatcattttcttttcctagCAATGCATCAGACATACCAGGCTGATCTCTACTTTCTGTGCTTGAGGACTGTCCAAGCTTATGTACAAGCATTGGAATCCAGCTTGTGCCCAATGTCCACCACAGCTCGTCAGCCCCTCAAGCTGCATGCAGTTgtgagtcatgaactgtagcacattgagtttgaggtgtgtgggactagaga #### Bbs1_ID724_10 --> 1 - 0 Original Alignment aGACTCCAAACACCCCAAGTACTGCATCGAGTTGAGTGCCCAGCCAGTGGGGCTGGTCCGGGTACACAAGGTCCTGGTGGTGGGCAGCACCCAAGAGAGTCTGCATGGCTTCACCCACAAG ggagcaaagcaagttctatgggctaaattaccttgctggcatctcttcagaGACTGTAAGCATCCCAAGTACTGCATAGAACTGAGTGTCCAACCAGTGGGACTAGTTCGGGCACACAAGGTCCTTGTGGTGGGTAGTACCCAAGAGGGTTTACATGGCTTTTCCCATAAAgtacatacctccctgtgttgtcctacccacttcttgaggttagcccccat Alignment from CESAR aGACTCCAAACACCCCAAGTACTGCATCGAGTTGAGTGCCCAGCCAGTGGGGCTGGTCCGGGTACACAAGGTCCTGGTGGTGGGCAGCACCCAAGAGAGTCTGCATGGCTTCACCCACAAG ggagcaaagcaagttctatgggctaaattaccttgctggcatctcttcagaGACTGTAAGCATCCCAAGTACTGCATAGAACTGAGTGTCCAACCAGTGGGACTAGTTCGGGCACACAAGGTCCTTGTGGTGGGTAGTACCCAAGAGGGTTTACATGGCTTTTCCCATAAAgtacatacctccctgtgttgtcctacccacttcttgaggttagcccccat Alignment from Spaln_aa2Genome AGACTCCAAACACCCCAAGTACTGCATCGAGTTGAGTGCCCAGCCAGTGGGGCTGGTCCGGGTACACAAGGTCCTGGTGGTGGGCAGCACCCAAGAGAGTCTGCATGGCTTCACCCACAAG ggagcaaagcaagttctatgggctaaattaccttgctggcatctcttcagAGACTGTAAGCATCCCAAGTACTGCATAGAACTGAGTGTCCAACCAGTGGGACTAGTTCGGGCACACAAGGTCCTTGTGGTGGGTAGTACCCAAGAGGGTTTACATGGCTTTTCCCATAAAgtacatacctccctgtgttgtcctacccacttcttgaggttagcccccat Alignment from Spaln_nt2Genome AGACTCCAAACACCCCAAGTACTGCATCGAGTTGAGTGCCCAGCCAGTGGGGCTGGTCCGGGTACACAAGGTCCTGGTGGTGGGCAGCACCCAAGAGAGTCTGCATGGCTTCACCCACAAG ggagcaaagcaagttctatgggctaaattaccttgctggcatctcttcagAGACTGTAAGCATCCCAAGTACTGCATAGAACTGAGTGTCCAACCAGTGGGACTAGTTCGGGCACACAAGGTCCTTGTGGTGGGTAGTACCCAAGAGGGTTTACATGGCTTTTCCCATAAAgtacatacctccctgtgttgtcctacccacttcttgaggttagcccccat Alignment from Pairagon AGACTCCAAACACCCCAAGTACTGCATCGAGTTGAGTGCCCAGCCAGTGGGGCTGGTCCGGGTACACAAGGTCCTGGTGGTGGGCAGCACCCAAGAGAGTCTGCATGGCTTCACCCACAAG ggagcaaagcaagttctatgggctaaattaccttgctggcatctcttcagAGACTGTAAGCATCCCAAGTACTGCATAGAACTGAGTGTCCAACCAGTGGGACTAGTTCGGGCACACAAGGTCCTTGTGGTGGGTAGTACCCAAGAGGGTTTACATGGCTTTTCCCATAAAgtacatacctccctgtgttgtcctacccacttcttgaggttagcccccat Alignment from Exonerate_protein2genome AGACTCCAAACACCCCAAGTACTGCATCGAGTTGAGTGCCCAGCCAGTGGGGCTGGTCCGGGTACACAAGGTCCTGGTGGTGGGCAGCACCCAAGAGAGTCTGCATGGCTTCACCCACAAG ggagcaaagcaagttctatgggctaaattaccttgctggcatctcttcagAGACTGTAAGCATCCCAAGTACTGCATAGAACTGAGTGTCCAACCAGTGGGACTAGTTCGGGCACACAAGGTCCTTGTGGTGGGTAGTACCCAAGAGGGTTTACATGGCTTTTCCCATAAAgtacatacctccctgtgttgtcctacccacttcttgaggttagcccccat Alignment from Exonerate_coding2genome AGACTCCAAACACCCCAAGTACTGCATCGAGTTGAGTGCCCAGCCAGTGGGGCTGGTCCGGGTACACAAGGTCCTGGTGGTGGGCAGCACCCAAGAGAGTCTGCATGGCTTCACCCACAAG ggagcaaagcaagttctatgggctaaattaccttgctggcatctcttcagAGACTGTAAGCATCCCAAGTACTGCATAGAACTGAGTGTCCAACCAGTGGGACTAGTTCGGGCACACAAGGTCCTTGTGGTGGGTAGTACCCAAGAGGGTTTACATGGCTTTTCCCATAAAgtacatacctccctgtgttgtcctacccacttcttgaggttagcccccat Alignment from GeneWise AGACTCCAAACACCCCAAGTACTGCATCGAGTTGAGTGCCCAGCCAGTGGGGCTGGTCCGGGTACACAAGGTCCTGGTGGTGGGCAGCACCCAAGAGAGTCTGCATGGCTTCACCCACAAG ggagcaaagcaagttctatgggctaaattaccttgctggcatctcttcagAGACTGTAAGCATCCCAAGTACTGCATAGAACTGAGTGTCCAACCAGTGGGACTAGTTCGGGCACACAAGGTCCTTGTGGTGGGTAGTACCCAAGAGGGTTTACATGGCTTTTCCCATAAAgtacatacctccctgtgttgtcctacccacttcttgaggttagcccccat #### Bbs1_ID725_9 --> 0 - 2 Original Alignment ATGAGCCTGCCCAGTGTCCCTGTCTTCCTGGAGGTTTCCGGCCAGTTTGATGTGGAGTTCCGGTTGACTGCTGCCTGCCGAAATGGGAGCATCTATATCCTGAGAag tgggcaggtcaggatgaatggaaggaatatatttcttctcccacccacagATGAGCTTACCAAGTGTCCCTGTTTTCCTGGAGGTCTCTGGACAGTTTGACGTGGAGTTCCGGTTGACGGCTGCATGCCGAAATGGGAGCATCTACATCTTGAGAcagtactgcagtcaacaaaaaggggtggagtcttgcttgatccggccagtca Alignment from CESAR ATGAGCCTGCCCAGTGTCCCTGTCTTCCTGGAGGTTTCCGGCCAGTTTGATGTGGAGTTCCGGTTGACTGCTGCCTGCCGAAATGGGAGCATCTATATCCTGAGAag tgggcaggtcaggatgaatggaaggaatatatttcttctcccacccacagATGAGCTTACCAAGTGTCCCTGTTTTCCTGGAGGTCTCTGGACAGTTTGACGTGGAGTTCCGGTTGACGGCTGCATGCCGAAATGGGAGCATCTACATCTTGAGAcagtactgcagtcaacaaaaaggggtggagtcttgcttgatccggccagtca Alignment from Spaln_aa2Genome ATGAGCCTGCCCAGTGTCCCTGTCTTCCTGGAGGTTTCCGGCCAGTTTGATGTGGAGTTCCGGTTGACTGCTGCCTGCCGAAATGGGAGCATCTATATCCTGAGAAG tgggcaggtcaggatgaatggaaggaatatatttcttctcccacccacagATGAGCTTACCAAGTGTCCCTGTTTTCCTGGAGGTCTCTGGACAGTTTGACGTGGAGTTCCGGTTGACGGCTGCATGCCGAAATGGGAGCATCTACATCTTGAGACAgtactgcagtcaacaaaaaggggtggagtcttgcttgatccggccagtca Alignment from Spaln_nt2Genome ATGAGCCTGCCCAGTGTCCCTGTCTTCCTGGAGGTTTCCGGCCAGTTTGATGTGGAGTTCCGGTTGACTGCTGCCTGCCGAAATGGGAGCATCTATATCCTGAGAAG tgggcaggtcaggatgaatggaaggaatatatttcttctcccacccacagATGAGCTTACCAAGTGTCCCTGTTTTCCTGGAGGTCTCTGGACAGTTTGACGTGGAGTTCCGGTTGACGGCTGCATGCCGAAATGGGAGCATCTACATCTTGAGACAgtactgcagtcaacaaaaaggggtggagtcttgcttgatccggccagtca Alignment from Pairagon ATGAGCCTGCCCAGTGTCCCTGTCTTCCTGGAGGTTTCCGGCCAGTTTGATGTGGAGTTCCGGTTGACTGCTGCCTGCCGAAATGGGAGCATCTATATCCTGAGAAG tgggcaggtcaggatgaatggaaggaatatatttcttctcccacccacagATGAGCTTACCAAGTGTCCCTGTTTTCCTGGAGGTCTCTGGACAGTTTGACGTGGAGTTCCGGTTGACGGCTGCATGCCGAAATGGGAGCATCTACATCTTGAGACAgtactgcagtcaacaaaaaggggtggagtcttgcttgatccggccagtca Alignment from Exonerate_protein2genome ATGAGCCTGCCCAGTGTCCCTGTCTTCCTGGAGGTTTCCGGCCAGTTTGATGTGGAGTTCCGGTTGACTGCTGCCTGCCGAAATGGGAGCATCTATATCCTGAGAAG tgggcaggtcaggatgaatggaaggaatatatttcttctcccacccacagATGAGCTTACCAAGTGTCCCTGTTTTCCTGGAGGTCTCTGGACAGTTTGACGTGGAGTTCCGGTTGACGGCTGCATGCCGAAATGGGAGCATCTACATCTTGAGACAgtactgcagtcaacaaaaaggggtggagtcttgcttgatccggccagtca Alignment from Exonerate_coding2genome ATGAGCCTGCCCAGTGTCCCTGTCTTCCTGGAGGTTTCCGGCCAGTTTGATGTGGAGTTCCGGTTGACTGCTGCCTGCCGAAATGGGAGCATCTATATCCTGAGAAG tgggcaggtcaggatgaatggaaggaatatatttcttctcccacccacagATGAGCTTACCAAGTGTCCCTGTTTTCCTGGAGGTCTCTGGACAGTTTGACGTGGAGTTCCGGTTGACGGCTGCATGCCGAAATGGGAGCATCTACATCTTGAGACAgtactgcagtcaacaaaaaggggtggagtcttgcttgatccggccagtca Alignment from GeneWise ATGAGCCTGCCCAGTGTCCCTGTCTTCCTGGAGGTTTCCGGCCAGTTTGATGTGGAGTTCCGGTTGACTGCTGCCTGCCGAAATGGGAGCATCTATATCCTGAGAAG tgggcaggtcaggatgaatggaaggaatatatttcttctcccacccacagATGAGCTTACCAAGTGTCCCTGTTTTCCTGGAGGTCTCTGGACAGTTTGACGTGGAGTTCCGGTTGACGGCTGCATGCCGAAATGGGAGCATCTACATCTTGAGACAgtactgcagtcaacaaaaaggggtggagtcttgcttgatccggccagtca #### Bbs1_ID732_2 --> 1 - 1 Original Alignment cAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACACCTTC---TCCTCCTGCCTGt cataccttttaaatctatctccccttcctgaccgctgttgtctcccgcaggAATGAGGTAAATTCCAAATGGCTGGATGCACACTATGACCCTATGGCTAACAACCATACTTTCTCCTCTTCCTGTCTGtgtaggtcctgatgccttacttgcagcccaggatacaatgagaatgaatat Alignment from CESAR cAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACACCTTCTCC---TCCTGCCTGt cataccttttaaatctatctccccttcctgaccgctgttgtctcccgcaggAATGAGGTAAATTCCAAATGGCTGGATGCACACTATGACCCTATGGCTAACAACCATACTTTCTCCTCTTCCTGTCTGtgtaggtcctgatgccttacttgcagcccaggatacaatgagaatgaggta Alignment from Spaln_aa2Genome CAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACACCTTC---TCCTCCTGCCTGT cataccttttaaatctatctccccttcctgaccgctgttgtctcccgcagGAATGAGGTAAATTCCAAATGGCTGGATGCACACTATGACCCTATGGCTAACAACCATACTTTCTCCTCTTCCTGTCTGTgtaggtcctgatgccttacttgcagcccaggatacaatgagaatgaatat Alignment from Spaln_nt2Genome CAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACACCTTCTCCTC---CTGCCTGT cataccttttaaatctatctccccttcctgaccgctgttgtctcccgcagGAATGAGGTAAATTCCAAATGGCTGGATGCACACTATGACCCTATGGCTAACAACCATACTTTCTCCTCTTCCTGTCTGTgtaggtcctgatgccttacttgcagcccaggatacaatgagaatgaatat Alignment from Pairagon CAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACACCTTCTCC---TCCTGCCTGT cataccttttaaatctatctccccttcctgaccgctgttgtctcccgcagGAATGAGGTAAATTCCAAATGGCTGGATGCACACTATGACCCTATGGCTAACAACCATACTTTCTCCTCTTCCTGTCTGTgtaggtcctgatgccttacttgcagcccaggatacaatgagaatgaatat Alignment from Exonerate_protein2genome CAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACACCTTC---TCCTCCTGCCTGT cataccttttaaatctatctccccttcctgaccgctgttgtctcccgcagGAATGAGGTAAATTCCAAATGGCTGGATGCACACTATGACCCTATGGCTAACAACCATACTTTCTCCTCTTCCTGTCTGTgtaggtcctgatgccttacttgcagcccaggatacaatgagaatgaatat Alignment from Exonerate_coding2genome cataccttttaaatctatctccccttcctgaccgctgttgtctcccgcaggaatgaggtaaattccaaatggctggatgcacactatgaccctatggctaacaaccatactttctcctcttcctgtctgtgtaggtcctgatgccttacttgcagcccaggatacaatgagaatgaatat Alignment from GeneWise AACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACACCTTCTCC---TCCTGCCTGT cataccttttaaatctatctccccttcctgaccgctgttgtctcccgcaggAATGAGGTAAATTCCAAATGGCTGGATGCACACTATGACCCTATGGCTAACAACCATACTTTCTCCTCTTCCTGTCTGTgtaggtcctgatgccttacttgcagcccaggatacaatgagaatgaatat #### Best1_ID2631_8 --> 0 - 2 Original Alignment GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCag ctctgaccttgggttaggtgatttaacactccttcttcttctgtcttcagGTGTCATTGTCATCTGTCGACCGAATGCACCAGAACCTGCCACCCATGGAGCGTGACATGTACTGGAATGAATCAGAGCCTCATCCT------ACGGCTGCCTCAGCCAGGTCTCGCTGGCACTCATTCATGGGAACTACCTTCAATCCCaggtaggttgggttagggacttggtgagatatcccacaatgcatccaggaga Alignment from CESAR GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCag ctctgaccttgggttaggtgatttaacactccttcttcttctgtcttcagGTGTCATTGTCATCTGTCGACCGAATGCACCAGAACCTGCCACCCATGGAGCGTGACATGTACTGGAATGAATCAGAGCCTCATCCT------ACGGCTGCCTCAGCCAGGTCTCGCTGGCACTCATTCATGGGAACTACCTTCAATCCCaggtaggttgggttagggacttggtgagatatcccacaatgcatccaggaga Alignment from Spaln_aa2Genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG ctctgaccttgggttaggtgatttaacactccttcttcttctgtcttcagGTGTCATTGTCATCTGTCGACCGAATGCACCAGAACCTGCCACCCATGGAGCGTGACATGTACTGGAATGAATCAGAGCCTCATCCT------ACGGCTGCCTCAGCCAGGTCTCGCTGGCACTCATTCATGGGAACTACCTTCAATCCCAGgtaggttgggttagggacttggtgagatatcccacaatgcatccaggaga Alignment from Spaln_nt2Genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG ctctgaccttgggttaggtgatttaacactccttcttcttctgtcttcagGTGTCATTGTCATCTGTCGACCGAATGCACCAGAACCTGCCACCCATGGAGCGTGACATGTACTGGAATGAATCAGAGCCTCATCC------TACGGCTGCCTCAGCCAGGTCTCGCTGGCACTCATTCATGGGAACTACCTTCAATCCCAGgtaggttgggttagggacttggtgagatatcccacaatgcatccaggaga Alignment from Pairagon GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG ctctgaccttgggttaggtgatttaacactccttcttcttctgtcttcagGTGTCATTGTCATCTGTCGACCGAATGCACCAGAACCTGCCACCCATGGAGCGTGACATGTACTGGAATGAATCAGAGCCTCATCC------TACGGCTGCCTCAGCCAGGTCTCGCTGGCACTCATTCATGGGAACTACCTTCAATCCCAGgtaggttgggttagggacttggtgagatatcccacaatgcatccaggaga Alignment from Exonerate_protein2genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG ctctgaccttgggttaggtgatttaacactccttcttcttctgtcttcagGTGTCATTGTCATCTGTCGACCGAATGCACCAGAACCTGCCACCCATGGAGCGTGACATGTACTGGAATGAATCAGAGCCTCATCCT------ACGGCTGCCTCAGCCAGGTCTCGCTGGCACTCATTCATGGGAACTACCTTCAATCCCAGgtaggttgggttagggacttggtgagatatcccacaatgcatccaggaga Alignment from Exonerate_coding2genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG ctctgaccttgggttaggtgatttaacactccttcttcttctgtcttcagGTGTCATTGTCATCTGTCGACCGAATGCACCAGAACCTGCCACCCATGGAGCGTGACATGTACTGGAATGAATCAGAGCCTCATCCT------ACGGCTGCCTCAGCCAGGTCTCGCTGGCACTCATTCATGGGAACTACCTTCAATCCCAGgtaggttgggttagggacttggtgagatatcccacaatgcatccaggaga Alignment from GeneWise GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG ctctgaccttgggttaggtgatttaacactccttcttcttctgtcttcagGTGTCATTGTCATCTGTCGACCGAATGCACCAGAACCTGCCACCCATGGAGCGTGACATGTACTGGAATGAATCAGAGCCTCATCCT------ACGGCTGCCTCAGCCAGGTCTCGCTGGCACTCATTCATGGGAACTACCTTCAATCCCAGgtaggttgggttagggacttggtgagatatcccacaatgcatccaggaga #### Blnk_ID8056_15 --> 0 - 0 Original Alignment GAGGCTGAACTGCTCGGTAAGCCCTGGTATGCTGGCGCCTGTGACCGCAAGTCTGCTGAAGAGGCCTTGCACAGATCCAACAAG cattatattacctctgaaaaatagttccgcgtcctacttgttttggtcagGAGGCAAAACTTTTAAGAAAGTCTTGGTATGCTGGGGCTTGTGACCATAAGTCTGCTGAAGAGGCCTTACACCGATCAAACAAGgtaaagattgaagcataagttagactataccaatcaatggatggaaaccc Alignment from CESAR GAGGCTGAACTGCTCGGTAAGCCCTGGTATGCTGGCGCCTGTGACCGCAAGTCTGCTGAAGAGGCCTTGCACAGATCCAACAAG cattatattacctctgaaaaatagttccgcgtcctacttgttttggtcagGAGGCAAAACTTTTAAGAAAGTCTTGGTATGCTGGGGCTTGTGACCATAAGTCTGCTGAAGAGGCCTTACACCGATCAAACAAGgtaaagattgaagcataagttagactataccaatcaatggatggaaaccc Alignment from Spaln_aa2Genome GAGGCTGAACTGCTCGGTAAGCCCTGGTATGCTGGCGCCTGTGACCGCAAGTCTGCTGAAGAGGCCTTGCACAGATCCAACAAG cattatattacctctgaaaaatagttccgcgtcctacttgttttggtcagGAGGCAAAACTTTTAAGAAAGTCTTGGTATGCTGGGGCTTGTGACCATAAGTCTGCTGAAGAGGCCTTACACCGATCAAACAAGgtaaagattgaagcataagttagactataccaatcaatggatggaaaccc Alignment from Spaln_nt2Genome GAGGCTGAACTGCTCGGTAAGCCCTGGTATGCTGGCGCCTGTGACCGCAAGTCTGCTGAAGAGGCCTTGCACAGATCCAACAAG cattatattacctctgaaaaatagttccgcgtcctacttgttttggtcagGAGGCAAAACTTTTAAGAAAGTCTTGGTATGCTGGGGCTTGTGACCATAAGTCTGCTGAAGAGGCCTTACACCGATCAAACAAGgtaaagattgaagcataagttagactataccaatcaatggatggaaaccc Alignment from Pairagon GAGGCTGAACTGCTCGGTAAGCCCTGGTATGCTGGCGCCTGTGACCGCAAGTCTGCTGAAGAGGCCTTGCACAGATCCAACAAG cattatattacctctgaaaaatagttccgcgtcctacttgttttggtcagGAGGCAAAACTTTTAAGAAAGTCTTGGTATGCTGGGGCTTGTGACCATAAGTCTGCTGAAGAGGCCTTACACCGATCAAACAAGgtaaagattgaagcataagttagactataccaatcaatggatggaaaccc Alignment from Exonerate_protein2genome GAGGCTGAACTGCTCGGTAAGCCCTGGTATGCTGGCGCCTGTGACCGCAAGTCTGCTGAAGAGGCCTTGCACAGATCCAACAAG cattatattacctctgaaaaatagttccgcgtcctacttgttttggtcagGAGGCAAAACTTTTAAGAAAGTCTTGGTATGCTGGGGCTTGTGACCATAAGTCTGCTGAAGAGGCCTTACACCGATCAAACAAGgtaaagattgaagcataagttagactataccaatcaatggatggaaaccc Alignment from Exonerate_coding2genome GAGGCTGAACTGCTCGGTAAGCCCTGGTATGCTGGCGCCTGTGACCGCAAGTCTGCTGAAGAGGCCTTGCACAGATCCAACAAG cattatattacctctgaaaaatagttccgcgtcctacttgttttggtcagGAGGCAAAACTTTTAAGAAAGTCTTGGTATGCTGGGGCTTGTGACCATAAGTCTGCTGAAGAGGCCTTACACCGATCAAACAAGgtaaagattgaagcataagttagactataccaatcaatggatggaaaccc Alignment from GeneWise GAGGCTGAACTGCTCGGTAAGCCCTGGTATGCTGGCGCCTGTGACCGCAAGTCTGCTGAAGAGGCCTTGCACAGATCCAACAAG cattatattacctctgaaaaatagttccgcgtcctacttgttttggtcagGAGGCAAAACTTTTAAGAAAGTCTTGGTATGCTGGGGCTTGTGACCATAAGTCTGCTGAAGAGGCCTTACACCGATCAAACAAGgtaaagattgaagcataagttagactataccaatcaatggatggaaaccc #### Blnk_ID8059_12 --> 2 - 2 Original Alignment aaAAGCCTGTTCCTGCTGAGCGCCACCGAGGGTCTAGTCACAGACAAGACACTGTACAGTCACCAGTGTTTCCTCCCACCCAGaa gtctgggccctcaacaaagccaaaaatcttggaacgccctctcattgcagaaAAGACTGTTCCTGCTGAGCGACACCGAGGGTCAAGTCACAGGCAGGACACTGTCCAGTCACCAGTGTTTCCTCCTACCCAGaagtagggaaccttaagttcctggttttgtctcttaatcatgttggacctgc Alignment from CESAR aaAAGCCTGTTCCTGCTGAGCGCCACCGAGGGTCTAGTCACAGACAAGACACTGTACAGTCACCAGTGTTTCCTCCCACCCAGaa gtctgggccctcaacaaagccaaaaatcttggaacgccctctcattgcagaaAAGACTGTTCCTGCTGAGCGACACCGAGGGTCAAGTCACAGGCAGGACACTGTCCAGTCACCAGTGTTTCCTCCTACCCAGaagtagggaaccttaagttcctggttttgtctcttaatcatgttggacctgc Alignment from Spaln_aa2Genome AAAAGCCTGTTCCTGCTGAGCGCCACCGAGGGTCTAGTCACAGACAAGACACTGTACAGTCACCAGTGTTTCCTCCCACCCAGAA gtctgggccctcaacaaagccaaaaatcttggaacgccctctcattgcagAAAAGACTGTTCCTGCTGAGCGACACCGAGGGTCAAGTCACAGGCAGGACACTGTCCAGTCACCAGTGTTTCCTCCTACCCAGAAgtagggaaccttaagttcctggttttgtctcttaatcatgttggacctgc Alignment from Spaln_nt2Genome AAAAGCCTGTTCCTGCTGAGCGCCACCGAGGGTCTAGTCACAGACAAGACACTGTACAGTCACCAGTGTTTCCTCCCACCCAGAA gtctgggccctcaacaaagccaaaaatcttggaacgccctctcattgcagAAAAGACTGTTCCTGCTGAGCGACACCGAGGGTCAAGTCACAGGCAGGACACTGTCCAGTCACCAGTGTTTCCTCCTACCCAGAAgtagggaaccttaagttcctggttttgtctcttaatcatgttggacctgc Alignment from Pairagon AAAAGCCTGTTCCTGCTGAGCGCCACCGAGGGTCTAGTCACAGACAAGACACTGTACAGTCACCAGTGTTTCCTCCCACCCAGAA gtctgggccctcaacaaagccaaaaatcttggaacgccctctcattgcagAAAAGACTGTTCCTGCTGAGCGACACCGAGGGTCAAGTCACAGGCAGGACACTGTCCAGTCACCAGTGTTTCCTCCTACCCAGAAgtagggaaccttaagttcctggttttgtctcttaatcatgttggacctgc Alignment from Exonerate_protein2genome AAAAGCCTGTTCCTGCTGAGCGCCACCGAGGGTCTAGTCACAGACAAGACACTGTACAGTCACCAGTGTTTCCTCCCACCCAGAA gtctgggccctcaacaaagccaaaaatcttggaacgccctctcattgcagAAAAGACTGTTCCTGCTGAGCGACACCGAGGGTCAAGTCACAGGCAGGACACTGTCCAGTCACCAGTGTTTCCTCCTACCCAGAAgtagggaaccttaagttcctggttttgtctcttaatcatgttggacctgc Alignment from Exonerate_coding2genome AAAAGCCTGTTCCTGCTGAGCGCCACCGAGGGTCTAGTCACAGACAAGACACTGTACAGTCACCAGTGTTTCCTCCCACCCAGAA gtctgggccctcaacaaagccaaaaatcttggaacgccctctcattgcagAAAAGACTGTTCCTGCTGAGCGACACCGAGGGTCAAGTCACAGGCAGGACACTGTCCAGTCACCAGTGTTTCCTCCTACCCAGAAgtagggaaccttaagttcctggttttgtctcttaatcatgttggacctgc Alignment from GeneWise AAAAGCCTGTTCCTGCTGAGCGCCACCGAGGGTCTAGTCACAGACAAGACACTGTACAGTCACCAGTGTTTCCTCCCACCCAGAA gtctgggccctcaacaaagccaaaaatcttggaacgccctctcattgcagAAAAGACTGTTCCTGCTGAGCGACACCGAGGGTCAAGTCACAGGCAGGACACTGTCCAGTCACCAGTGTTTCCTCCTACCCAGAAgtagggaaccttaagttcctggttttgtctcttaatcatgttggacctgc #### Blnk_ID8066_5 --> 0 - 1 Original Alignment GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAg acctactgtgaattctggcagttgaggggctgttgtcttaccactcacagGACAGCGACTATGAAAATCCAGATGAACATTCAGACTCTGAGATGTATGTGATGCCTGCTGAGGAGACAGGAGATGATTCCTATGAACCACCTCCTGCTGAGCAGCAGACACGGGTGGTCCATCCAGCACTGCCCTTCACAAGGGGTGAGTATGTAggtgagttggtagtattactggaaatataggaaagggaagatgccaccaga Alignment from CESAR GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAg acctactgtgaattctggcagttgaggggctgttgtcttaccactcacagGACAGCGACTATGAAAATCCAGATGAACATTCAGACTCTGAGATGTATGTGATGCCTGCTGAGGAGACAGGAGATGATTCCTATGAACCACCTCCTGCTGAGCAGCAGACACGGGTGGTCCATCCAGCACTGCCCTTCACAAGGGGTGAGTATGTAggtgagttggtagtattactggaaatataggaaagggaagatgccaccaga Alignment from Spaln_aa2Genome GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAG acctactgtgaattctggcagttgaggggctgttgtcttaccactcacagGACAGCGACTATGAAAATCCAGATGAACATTCAGACTCTGAGATGTATGTGATGCCTGCTGAGGAGACAGGAGATGATTCCTATGAACCACCTCCTGCTGAGCAGCAGACACGGGTGGTCCATCCAGCACTGCCCTTCACAAGGGGTGAGTATGTAGgtgagttggtagtattactggaaatataggaaagggaagatgccaccaga Alignment from Spaln_nt2Genome GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAG acctactgtgaattctggcagttgaggggctgttgtcttaccactcacagGACAGCGACTATGAAAATCCAGATGAACATTCAGACTCTGAGATGTATGTGATGCCTGCTGAGGAGACAGGAGATGATTCCTATGAACCACCTCCTGCTGAGCAGCAGACACGGGTGGTCCATCCAGCACTGCCCTTCACAAGGGGTGAGTATGTAGgtgagttggtagtattactggaaatataggaaagggaagatgccaccaga Alignment from Pairagon GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAG acctactgtgaattctggcagttgaggggctgttgtcttaccactcacagGACAGCGACTATGAAAATCCAGATGAACATTCAGACTCTGAGATGTATGTGATGCCTGCTGAGGAGACAGGAGATGATTCCTATGAACCACCTCCTGCTGAGCAGCAGACACGGGTGGTCCATCCAGCACTGCCCTTCACAAGGGGTGAGTATGTAGgtgagttggtagtattactggaaatataggaaagggaagatgccaccaga Alignment from Exonerate_protein2genome GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAG acctactgtgaattctggcagttgaggggctgttgtcttaccactcacagGACAGCGACTATGAAAATCCAGATGAACATTCAGACTCTGAGATGTATGTGATGCCTGCTGAGGAGACAGGAGATGATTCCTATGAACCACCTCCTGCTGAGCAGCAGACACGGGTGGTCCATCCAGCACTGCCCTTCACAAGGGGTGAGTATGTAGgtgagttggtagtattactggaaatataggaaagggaagatgccaccaga Alignment from Exonerate_coding2genome ACAGCCCTGCAGATGAAGAGGAGCAGTGGTCAGATGACTTCGACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAG acctactgtGAATTCTGGCAGTTGAGGGGCTGTTGTCTTACCACTCACAGGACAGCGACTATGAAAATCCAGATGAACATTCAGACTCTGAGATGTATGTGATGCCTGCTGAGGAGACAGGAGATGATTCCTATGAACCACCTCCTGCTGAGCAGCAGACACGGGTGGTCCATCCAGCACTGCCCTTCACAAGGGGTGAGTATGTAGgtgagttggtagtattactggaaatataggaaagggaagatgccaccaga Alignment from GeneWise GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAG acctactgtgaattctggcagttgaggggctgttgtcttaccactcacagGACAGCGACTATGAAAATCCAGATGAACATTCAGACTCTGAGATGTATGTGATGCCTGCTGAGGAGACAGGAGATGATTCCTATGAACCACCTCCTGCTGAGCAGCAGACACGGGTGGTCCATCCAGCACTGCCCTTCACAAGGGGTGAGTATGTAGgtgagttggtagtattactggaaatataggaaagggaagatgccaccaga #### Bscl2_ID2421_4 --> 0 - 0 Original Alignment GTACTGATGTATGGACAGCCATATCGAGTCACCTTAGAGCTTGAACTGCCCGAATCCCCTGTGAATCAAGACTTGGGCATGTTCTTAGTCACTGTTTCATGTTATACCAGAGGTGGCCGAATCATCTCCACTTCTTCACGCTCA gcatgtcacacctcagtctcaatccaccactctcaactcctcctcctcagGTATTGATGTATGGACAGCCATAC------------GAGGTTGAGTTGCCCAAATCGCCTGTGAATAAAGGTTCAGGCATGTTCCTGGTAAGTATTTCATGTCGTACAAGGGGTAGTCAAATCATCTCTACATATTCCAGTTCTgtgagtgtctatggacaatagtgaagcactaatgctctcctcgtgcaccc Alignment from CESAR GTACTGATGTATGGACAGCCATATCGAGTCACCTTAGAGCTTGAACTGCCCGAATCCCCTGTGAATCAAGACTTGGGCATGTTCTTAGTCACTGTTTCATGTTATACCAGAGGTGGCCGAATCATCTCCACTTCTTCACGCTCA gcatgtcacacctcagtctcaatccaccactctcaactcctcctcctcagGTATTGATGTATGGACAGCCATAC------------GAGGTTGAGTTGCCCAAATCGCCTGTGAATAAAGGTTCAGGCATGTTCCTGGTAAGTATTTCATGTCGTACAAGGGGTAGTCAAATCATCTCTACATATTCCAGTTCTgtgagtgtctatggacaatagtgaagcactaatgctctcctcgtgcaccc Alignment from Spaln_aa2Genome GTACTGATGTATGGACAGCCATATCGAGTCACCTTAGAGCTTGAACTGCCCGAATCCCCTGTGAATCAAGACTTGGGCATGTTCTTAGTCACTGTTTCATGTTATACCAGAGGTGGCCGAATCATCTCCACTTCTTCACGCTCA gcatgtcacacctcagtctcaatccaccactctcaactcctcctcctcagGTATTGATGTATGGACAGCCATAC------------GAGGTTGAGTTGCCCAAATCGCCTGTGAATAAAGGTTCAGGCATGTTCCTGGTAAGTATTTCATGTCGTACAAGGGGTAGTCAAATCATCTCTACATATTCCAGTTCTgtgagtgtctatggacaatagtgaagcactaatgctctcctcgtgcaccc Alignment from Spaln_nt2Genome GTACTGATGTATGGACAGCCATATCGAGTCACCTTAGAGCTTGAACTGCCCGAATCCCCTGTGAATCAAGACTTGGGCATGTTCTTAGTCACTGTTTCATGTTATACCAGAGGTGGCCGAATCATCTCCACTTCTTCACGCTCA gcatgtcacacctcagtctcaatccaccactctcaactcctcctcctcagGTATTGATGTATGGACAGCCATA------------CGAGGTTGAGTTGCCCAAATCGCCTGTGAATAAAGGTTCAGGCATGTTCCTGGTAAGTATTTCATGTCGTACAAGGGGTAGTCAAATCATCTCTACATATTCCAGTTCTgtgagtgtctatggacaatagtgaagcactaatgctctcctcgtgcaccc Alignment from Pairagon GTACTGATGTATGGACAGCCATATCGAGTCACCTTAGAGCTTGAACTGCCCGAATCCCCTGTGAATCAAGACTTGGGCATGTTCTTAGTCACTGTTTCATGTTATACCAGAGGTGGCCGAATCATCTCCACTTCTTCACGCTCA gcatgtcacacctcagtctcaatccaccactctcaactcctcctcctcagGTATTGATGTATGGACAGCCATAC------------GAGGTTGAGTTGCCCAAATCGCCTGTGAATAAAGGTTCAGGCATGTTCCTGGTAAGTATTTCATGTCGTACAAGGGGTAGTCAAATCATCTCTACATATTCCAGTTCTgtgagtgtctatggacaatagtgaagcactaatgctctcctcgtgcaccc Alignment from Exonerate_protein2genome GTACTGATGTATGGACAGCCATATCGAGTCACCTTAGAGCTTGAACTGCCCGAATCCCCTGTGAATCAAGACTTGGGCATGTTCTTAGTCACTGTTTCATGTTATACCAGAGGTGGCCGAATCATCTCCACTTCTTCACGCTCA gcatgtcacacctcagtctcaatccaccactctcaactcctcctcctcagGTATTGATGTATGGACAGCCATAC------------GAGGTTGAGTTGCCCAAATCGCCTGTGAATAAAGGTTCAGGCATGTTCCTGGTAAGTATTTCATGTCGTACAAGGGGTAGTCAAATCATCTCTACATATTCCAGTTCTgtgagtgtctatggacaatagtgaagcactaatgctctcctcgtgcaccc Alignment from Exonerate_coding2genome GTACTGATGTATGGACAGCCATATCGAGTCACCTTAGAGCTTGAACTGCCCGAATCCCCTGTGAATCAAGACTTGGGCATGTTCTTAGTCACTGTTTCATGTTATACCAGAGGTGGCCGAATCATCTCCACTTCTTCACGCTCA gcatgtcacacctcagtctcaatccaccactctcaactcctcctcctcagGTATTGATGTATGGACAGCCATAC------------GAGGTTGAGTTGCCCAAATCGCCTGTGAATAAAGGTTCAGGCATGTTCCTGGTAAGTATTTCATGTCGTACAAGGGGTAGTCAAATCATCTCTACATATTCCAGTTCTgtgagtgtctatggacaatagtgaagcactaatgctctcctcgtgcaccc Alignment from GeneWise GTACTGATGTATGGACAGCCATATCGAGTCACCTTAGAGCTTGAACTGCCCGAATCCCCTGTGAATCAAGACTTGGGCATGTTCTTAGTCACTGTTTCATGTTATACCAGAGGTGGCCGAATCATCTCCACTTCTTCACGCTCA gcatgtcacacctcagtctcaatccaccactctcaactcctcctcctcagGTATTGATGTATGGACAGCCATAC------------GAGGTTGAGTTGCCCAAATCGCCTGTGAATAAAGGTTCAGGCATGTTCCTGGTAAGTATTTCATGTCGTACAAGGGGTAGTCAAATCATCTCTACATATTCCAGTTCTgtgagtgtctatggacaatagtgaagcactaatgctctcctcgtgcaccc #### Btaf1_ID7228_11 --> 0 - 0 Original Alignment GTTGTAGCGCCAGTTCGTGAGACTTGTGCTCAAACGTTAGGTGTGGTTTTAAAGCACATGAACGAAACAGGAGTTCATAAGACAGTGGATGTGCTGCTGAAATTATTGACACAAGAACAGTGGGAAGTTAGACATGGTGGTCTTCTGGGAATAAAATATGCTTTGGCAGTTCGTCAG gttctggatgtacatacccgctccatattttctcttgtttatttctctagGTTGTAGCACCAGTTCGTGAGACTTGTGCTCAAACGTTGGGTGTGGTTTTGGAGCACATGAATGAAATGGGAATTTATAAGACAGTAGATGTGCTGCTGAAATTATTAACACAAGAACAAAGGAAAGTTAGACATGGTGGTCTTCTGGGAATAAAATATGCTTTAGCAGTTCGTCAGgttagtagagtggttgcataacaatgtcccataagggccatatatgtgtc Alignment from CESAR GTTGTAGCGCCAGTTCGTGAGACTTGTGCTCAAACGTTAGGTGTGGTTTTAAAGCACATGAACGAAACAGGAGTTCATAAGACAGTGGATGTGCTGCTGAAATTATTGACACAAGAACAGTGGGAAGTTAGACATGGTGGTCTTCTGGGAATAAAATATGCTTTGGCAGTTCGTCAG gttctggatgtacatacccgctccatattttctcttgtttatttctctagGTTGTAGCACCAGTTCGTGAGACTTGTGCTCAAACGTTGGGTGTGGTTTTGGAGCACATGAATGAAATGGGAATTTATAAGACAGTAGATGTGCTGCTGAAATTATTAACACAAGAACAAAGGAAAGTTAGACATGGTGGTCTTCTGGGAATAAAATATGCTTTAGCAGTTCGTCAGgttagtagagtggttgcataacaatgtcccataagggccatatatgtgtc Alignment from Spaln_aa2Genome GTTGTAGCGCCAGTTCGTGAGACTTGTGCTCAAACGTTAGGTGTGGTTTTAAAGCACATGAACGAAACAGGAGTTCATAAGACAGTGGATGTGCTGCTGAAATTATTGACACAAGAACAGTGGGAAGTTAGACATGGTGGTCTTCTGGGAATAAAATATGCTTTGGCAGTTCGTCAG gttctggatgtacatacccgctccatattttctcttgtttatttctctagGTTGTAGCACCAGTTCGTGAGACTTGTGCTCAAACGTTGGGTGTGGTTTTGGAGCACATGAATGAAATGGGAATTTATAAGACAGTAGATGTGCTGCTGAAATTATTAACACAAGAACAAAGGAAAGTTAGACATGGTGGTCTTCTGGGAATAAAATATGCTTTAGCAGTTCGTCAGgttagtagagtggttgcataacaatgtcccataagggccatatatgtgtc Alignment from Spaln_nt2Genome GTTGTAGCGCCAGTTCGTGAGACTTGTGCTCAAACGTTAGGTGTGGTTTTAAAGCACATGAACGAAACAGGAGTTCATAAGACAGTGGATGTGCTGCTGAAATTATTGACACAAGAACAGTGGGAAGTTAGACATGGTGGTCTTCTGGGAATAAAATATGCTTTGGCAGTTCGTCAG gttctggatgtacatacccgctccatattttctcttgtttatttctctagGTTGTAGCACCAGTTCGTGAGACTTGTGCTCAAACGTTGGGTGTGGTTTTGGAGCACATGAATGAAATGGGAATTTATAAGACAGTAGATGTGCTGCTGAAATTATTAACACAAGAACAAAGGAAAGTTAGACATGGTGGTCTTCTGGGAATAAAATATGCTTTAGCAGTTCGTCAGgttagtagagtggttgcataacaatgtcccataagggccatatatgtgtc Alignment from Pairagon GTTGTAGCGCCAGTTCGTGAGACTTGTGCTCAAACGTTAGGTGTGGTTTTAAAGCACATGAACGAAACAGGAGTTCATAAGACAGTGGATGTGCTGCTGAAATTATTGACACAAGAACAGTGGGAAGTTAGACATGGTGGTCTTCTGGGAATAAAATATGCTTTGGCAGTTCGTCAG gttctggatgtacatacccgctccatattttctcttgtttatttctctagGTTGTAGCACCAGTTCGTGAGACTTGTGCTCAAACGTTGGGTGTGGTTTTGGAGCACATGAATGAAATGGGAATTTATAAGACAGTAGATGTGCTGCTGAAATTATTAACACAAGAACAAAGGAAAGTTAGACATGGTGGTCTTCTGGGAATAAAATATGCTTTAGCAGTTCGTCAGgttagtagagtggttgcataacaatgtcccataagggccatatatgtgtc Alignment from Exonerate_protein2genome GTTGTAGCGCCAGTTCGTGAGACTTGTGCTCAAACGTTAGGTGTGGTTTTAAAGCACATGAACGAAACAGGAGTTCATAAGACAGTGGATGTGCTGCTGAAATTATTGACACAAGAACAGTGGGAAGTTAGACATGGTGGTCTTCTGGGAATAAAATATGCTTTGGCAGTTCGTCAG gttctggatgtacatacccgctccatattttctcttgtttatttctctagGTTGTAGCACCAGTTCGTGAGACTTGTGCTCAAACGTTGGGTGTGGTTTTGGAGCACATGAATGAAATGGGAATTTATAAGACAGTAGATGTGCTGCTGAAATTATTAACACAAGAACAAAGGAAAGTTAGACATGGTGGTCTTCTGGGAATAAAATATGCTTTAGCAGTTCGTCAGgttagtagagtggttgcataacaatgtcccataagggccatatatgtgtc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTTGTAGCGCCAGTTCGTGAGACTTGTGCTCAAACGTTAGGTGTGGTTTTAAAGCACATGAACGAAACAGGAGTTCATAAGACAGTGGATGTGCTGCTGAAATTATTGACACAAGAACAGTGGGAAGTTAGACATGGTGGTCTTCTGGGAATAAAATATGCTTTGGCAGTTCGTCAG gttctggatgtacatacccgctccatattttctcttgtttatttctctagGTTGTAGCACCAGTTCGTGAGACTTGTGCTCAAACGTTGGGTGTGGTTTTGGAGCACATGAATGAAATGGGAATTTATAAGACAGTAGATGTGCTGCTGAAATTATTAACACAAGAACAAAGGAAAGTTAGACATGGTGGTCTTCTGGGAATAAAATATGCTTTAGCAGTTCGTCAGgttagtagagtggttgcataacaatgtcccataagggccatatatgtgtc #### Btaf1_ID7232_14 --> 1 - 0 Original Alignment tATTCAACAGTCACTCACAGTTTTAGTCCCACGTGTCTGGCCATTTTTGCATCACACTATATCTTCAGTTCGAAGAGCAGCATTGGAAACTCTCTTTACATTATTATCAACACAGGACGAG tttttgatatgcccaattaatctgtaaactattgtatcttccccattcagtATTCAGCAGTCCCTCACAGTTCTTGTCCCACGTGTCTGGCCATTTTTGCATCATACTATATCTTCAGTTCGAAGAGCAGCGTTGGAGACTCTTTTTACGTTATTATCGATACAGGATGAGgtgaggagttgattaaatgaagtgaaacactcacctgggtaccctaaact Alignment from CESAR tATTCAACAGTCACTCACAGTTTTAGTCCCACGTGTCTGGCCATTTTTGCATCACACTATATCTTCAGTTCGAAGAGCAGCATTGGAAACTCTCTTTACATTATTATCAACACAGGACGAG tttttgatatgcccaattaatctgtaaactattgtatcttccccattcagtATTCAGCAGTCCCTCACAGTTCTTGTCCCACGTGTCTGGCCATTTTTGCATCATACTATATCTTCAGTTCGAAGAGCAGCGTTGGAGACTCTTTTTACGTTATTATCGATACAGGATGAGgtgaggagttgattaaatgaagtgaaacactcacctgggtaccctaaact Alignment from Spaln_aa2Genome TATTCAACAGTCACTCACAGTTTTAGTCCCACGTGTCTGGCCATTTTTGCATCACACTATATCTTCAGTTCGAAGAGCAGCATTGGAAACTCTCTTTACATTATTATCAACACAGGACGAG tttttgatatgcccaattaatctgtaaactattgtatcttccccattcagTATTCAGCAGTCCCTCACAGTTCTTGTCCCACGTGTCTGGCCATTTTTGCATCATACTATATCTTCAGTTCGAAGAGCAGCGTTGGAGACTCTTTTTACGTTATTATCGATACAGGATGAGgtgaggagttgattaaatgaagtgaaacactcacctgggtaccctaaact Alignment from Spaln_nt2Genome TATTCAACAGTCACTCACAGTTTTAGTCCCACGTGTCTGGCCATTTTTGCATCACACTATATCTTCAGTTCGAAGAGCAGCATTGGAAACTCTCTTTACATTATTATCAACACAGGACGAG tttttgatatgcccaattaatctgtaaactattgtatcttccccattcagTATTCAGCAGTCCCTCACAGTTCTTGTCCCACGTGTCTGGCCATTTTTGCATCATACTATATCTTCAGTTCGAAGAGCAGCGTTGGAGACTCTTTTTACGTTATTATCGATACAGGATGAGgtgaggagttgattaaatgaagtgaaacactcacctgggtaccctaaact Alignment from Pairagon TATTCAACAGTCACTCACAGTTTTAGTCCCACGTGTCTGGCCATTTTTGCATCACACTATATCTTCAGTTCGAAGAGCAGCATTGGAAACTCTCTTTACATTATTATCAACACAGGACGAG tttttgatatgcccaattaatctgtaaactattgtatcttccccattcagTATTCAGCAGTCCCTCACAGTTCTTGTCCCACGTGTCTGGCCATTTTTGCATCATACTATATCTTCAGTTCGAAGAGCAGCGTTGGAGACTCTTTTTACGTTATTATCGATACAGGATGAGgtgaggagttgattaaatgaagtgaaacactcacctgggtaccctaaact Alignment from Exonerate_protein2genome TATTCAACAGTCACTCACAGTTTTAGTCCCACGTGTCTGGCCATTTTTGCATCACACTATATCTTCAGTTCGAAGAGCAGCATTGGAAACTCTCTTTACATTATTATCAACACAGGACGAG tttttgatatgcccaattaatctgtaaactattgtatcttccccattcagTATTCAGCAGTCCCTCACAGTTCTTGTCCCACGTGTCTGGCCATTTTTGCATCATACTATATCTTCAGTTCGAAGAGCAGCGTTGGAGACTCTTTTTACGTTATTATCGATACAGGATGAGgtgaggagttgattaaatgaagtgaaacactcacctgggtaccctaaact Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TATTCAACAGTCACTCACAGTTTTAGTCCCACGTGTCTGGCCATTTTTGCATCACACTATATCTTCAGTTCGAAGAGCAGCATTGGAAACTCTCTTTACATTATTATCAACACAGGACGAG tttttgatatgcccaattaatctgtaaactattgtatcttccccattcagTATTCAGCAGTCCCTCACAGTTCTTGTCCCACGTGTCTGGCCATTTTTGCATCATACTATATCTTCAGTTCGAAGAGCAGCGTTGGAGACTCTTTTTACGTTATTATCGATACAGGATGAGgtgaggagttgattaaatgaagtgaaacactcacctgggtaccctaaact #### Btaf1_ID7235_17 --> 0 - 2 Original Alignment GAAAAAACAGGTGGTAAGGTACGGCAAGGTCAAATCCAGAATAAAGAAGTGCTTCAGGAGTATATTGCTGGTGCAGACACCATCATGGAAGACCCAGCGACCAGAGATTTTGTAGTTATGAGGGCCAGGATGATGGCAGCTaa tcatgtgcttttatgtgttgaatcaactctatctcttgtattacccacagGAAAAAACAGGAGGTAGAGTGCGGCAAGGTCAAACACAAAACAGAGAAGTGTTACAGGAGTACATTTCCGGTGCAGACACTATCATGGAAGATCCAACAACCAGAGATTTCATAGTTATGAGGGCCAGAATGATGGCCGCCaagtaagtgtttcatggggaatgagggagtgaaatttctgatccaatgtacc Alignment from CESAR GAAAAAACAGGTGGTAAGGTACGGCAAGGTCAAATCCAGAATAAAGAAGTGCTTCAGGAGTATATTGCTGGTGCAGACACCATCATGGAAGACCCAGCGACCAGAGATTTTGTAGTTATGAGGGCCAGGATGATGGCAGCTaa tcatgtgcttttatgtgttgaatcaactctatctcttgtattacccacagGAAAAAACAGGAGGTAGAGTGCGGCAAGGTCAAACACAAAACAGAGAAGTGTTACAGGAGTACATTTCCGGTGCAGACACTATCATGGAAGATCCAACAACCAGAGATTTCATAGTTATGAGGGCCAGAATGATGGCCGCCaagtaagtgtttcatggggaatgagggagtgaaatttctgatccaatgtacc Alignment from Spaln_aa2Genome GAAAAAACAGGTGGTAAGGTACGGCAAGGTCAAATCCAGAATAAAGAAGTGCTTCAGGAGTATATTGCTGGTGCAGACACCATCATGGAAGACCCAGCGACCAGAGATTTTGTAGTTATGAGGGCCAGGATGATGGCAGCTAA tcatgtgcttttatgtgttgaatcaactctatctcttgtattacccacagGAAAAAACAGGAGGTAGAGTGCGGCAAGGTCAAACACAAAACAGAGAAGTGTTACAGGAGTACATTTCCGGTGCAGACACTATCATGGAAGATCCAACAACCAGAGATTTCATAGTTATGAGGGCCAGAATGATGGCCGCCAAgtaagtgtttcatggggaatgagggagtgaaatttctgatccaatgtacc Alignment from Spaln_nt2Genome GAAAAAACAGGTGGTAAGGTACGGCAAGGTCAAATCCAGAATAAAGAAGTGCTTCAGGAGTATATTGCTGGTGCAGACACCATCATGGAAGACCCAGCGACCAGAGATTTTGTAGTTATGAGGGCCAGGATGATGGCAGCTAA tcatgtgcttttatgtgttgaatcaactctatctcttgtattacccacagGAAAAAACAGGAGGTAGAGTGCGGCAAGGTCAAACACAAAACAGAGAAGTGTTACAGGAGTACATTTCCGGTGCAGACACTATCATGGAAGATCCAACAACCAGAGATTTCATAGTTATGAGGGCCAGAATGATGGCCGCCAAgtaagtgtttcatggggaatgagggagtgaaatttctgatccaatgtacc Alignment from Pairagon GAAAAAACAGGTGGTAAGGTACGGCAAGGTCAAATCCAGAATAAAGAAGTGCTTCAGGAGTATATTGCTGGTGCAGACACCATCATGGAAGACCCAGCGACCAGAGATTTTGTAGTTATGAGGGCCAGGATGATGGCAGCTAA tcatgtgcttttatgtgttgaatcaactctatctcttgtattacccacagGAAAAAACAGGAGGTAGAGTGCGGCAAGGTCAAACACAAAACAGAGAAGTGTTACAGGAGTACATTTCCGGTGCAGACACTATCATGGAAGATCCAACAACCAGAGATTTCATAGTTATGAGGGCCAGAATGATGGCCGCCAAgtaagtgtttcatggggaatgagggagtgaaatttctgatccaatgtacc Alignment from Exonerate_protein2genome GAAAAAACAGGTGGTAAGGTACGGCAAGGTCAAATCCAGAATAAAGAAGTGCTTCAGGAGTATATTGCTGGTGCAGACACCATCATGGAAGACCCAGCGACCAGAGATTTTGTAGTTATGAGGGCCAGGATGATGGCAGCTAA tcatgtgcttttatgtgttgaatcaactctatctcttgtattacccacagGAAAAAACAGGAGGTAGAGTGCGGCAAGGTCAAACACAAAACAGAGAAGTGTTACAGGAGTACATTTCCGGTGCAGACACTATCATGGAAGATCCAACAACCAGAGATTTCATAGTTATGAGGGCCAGAATGATGGCCGCCAAgtaagtgtttcatggggaatgagggagtgaaatttctgatccaatgtacc Alignment from Exonerate_coding2genome GAAAAAACAGGTGGTAAGGTACGGCAAGGTCAAATCCAGAATAAAGAAGTGCTTCAGGAGTATATTGCTGGTGCAGACACCATCATGGAAGACCCAGCGACCAGAGATTTTGTAGTTATGAGGGCCAGGATGATGGCAGCTAA tcatgtgcttttatgtgttgaatcaactctatctcttgtattacccacagGAAAAAACAGGAGGTAGAGTGCGGCAAGGTCAAACACAAAACAGAGAAGTGTTACAGGAGTACATTTCCGGTGCAGACACTATCATGGAAGATCCAACAACCAGAGATTTCATAGTTATGAGGGCCAGAATGATGGCCGCCAAgtaagtgtttcatggggaatgagggagtgaaatttctgatccaatgtacc Alignment from GeneWise GAAAAAACAGGTGGTAAGGTACGGCAAGGTCAAATCCAGAATAAAGAAGTGCTTCAGGAGTATATTGCTGGTGCAGACACCATCATGGAAGACCCAGCGACCAGAGATTTTGTAGTTATGAGGGCCAGGATGATGGCAGCTAA tcatgtgcttttatgtgttgaatcaactctatctcttgtattacccacagGAAAAAACAGGAGGTAGAGTGCGGCAAGGTCAAACACAAAACAGAGAAGTGTTACAGGAGTACATTTCCGGTGCAGACACTATCATGGAAGATCCAACAACCAGAGATTTCATAGTTATGAGGGCCAGAATGATGGCCGCCAAgtaagtgtttcatggggaatgagggagtgaaatttctgatccaatgtacc #### Btaf1_ID7242_21 --> 2 - 0 Original Alignment gaTCCAACTCAGAAAAGGATGGAATGCACCATACTGTCACCAAGCACAGGGGGATCATTACACTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCCATCCCCAAAGCAATCAAAGCTCAGATAGCAGATCTACCTGCAGGAAGTAGTGGGACTATCCTGGTTGAACTTGATGAG aactgtaatatttttctagcacaggatacagcttccattgtatttctcaggaTCCAACTCAGAAAAGGATGGAATGCACCACACGGTCACAAAGCACAGGGGAATCATGACCCTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCAATCCCCAAGGCAATTAAAGCCCAGATAGCTGACCTTCCTGCAGGCAGTAGTGGGACTATCCTAGTTGAACTCGATGAGgtaagtgggcggggttgcacccatagactcgcccttgtaggggaggagcc Alignment from CESAR gaTCCAACTCAGAAAAGGATGGAATGCACCATACTGTCACCAAGCACAGGGGGATCATTACACTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCCATCCCCAAAGCAATCAAAGCTCAGATAGCAGATCTACCTGCAGGAAGTAGTGGGACTATCCTGGTTGAACTTGATGAG aactgtaatatttttctagcacaggatacagcttccattgtatttctcaggaTCCAACTCAGAAAAGGATGGAATGCACCACACGGTCACAAAGCACAGGGGAATCATGACCCTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCAATCCCCAAGGCAATTAAAGCCCAGATAGCTGACCTTCCTGCAGGCAGTAGTGGGACTATCCTAGTTGAACTCGATGAGgtaagtgggcggggttgcacccatagactcgcccttgtaggggaggagcc Alignment from Spaln_aa2Genome GATCCAACTCAGAAAAGGATGGAATGCACCATACTGTCACCAAGCACAGGGGGATCATTACACTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCCATCCCCAAAGCAATCAAAGCTCAGATAGCAGATCTACCTGCAGGAAGTAGTGGGACTATCCTGGTTGAACTTGATGAG aactgtaatatttttctagcacaggatacagcttccattgtatttctcagGATCCAACTCAGAAAAGGATGGAATGCACCACACGGTCACAAAGCACAGGGGAATCATGACCCTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCAATCCCCAAGGCAATTAAAGCCCAGATAGCTGACCTTCCTGCAGGCAGTAGTGGGACTATCCTAGTTGAACTCGATGAGgtaagtgggcggggttgcacccatagactcgcccttgtaggggaggagcc Alignment from Spaln_nt2Genome GATCCAACTCAGAAAAGGATGGAATGCACCATACTGTCACCAAGCACAGGGGGATCATTACACTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCCATCCCCAAAGCAATCAAAGCTCAGATAGCAGATCTACCTGCAGGAAGTAGTGGGACTATCCTGGTTGAACTTGATGAG aactgtaatatttttctagcacaggatacagcttccattgtatttctcagGATCCAACTCAGAAAAGGATGGAATGCACCACACGGTCACAAAGCACAGGGGAATCATGACCCTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCAATCCCCAAGGCAATTAAAGCCCAGATAGCTGACCTTCCTGCAGGCAGTAGTGGGACTATCCTAGTTGAACTCGATGAGgtaagtgggcggggttgcacccatagactcgcccttgtaggggaggagcc Alignment from Pairagon GATCCAACTCAGAAAAGGATGGAATGCACCATACTGTCACCAAGCACAGGGGGATCATTACACTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCCATCCCCAAAGCAATCAAAGCTCAGATAGCAGATCTACCTGCAGGAAGTAGTGGGACTATCCTGGTTGAACTTGATGAG aactgtaatatttttctagcacaggatacagcttccattgtatttctcagGATCCAACTCAGAAAAGGATGGAATGCACCACACGGTCACAAAGCACAGGGGAATCATGACCCTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCAATCCCCAAGGCAATTAAAGCCCAGATAGCTGACCTTCCTGCAGGCAGTAGTGGGACTATCCTAGTTGAACTCGATGAGgtaagtgggcggggttgcacccatagactcgcccttgtaggggaggagcc Alignment from Exonerate_protein2genome GATCCAACTCAGAAAAGGATGGAATGCACCATACTGTCACCAAGCACAGGGGGATCATTACACTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCCATCCCCAAAGCAATCAAAGCTCAGATAGCAGATCTACCTGCAGGAAGTAGTGGGACTATCCTGGTTGAACTTGATGAG aactgtaatatttttctagcacaggatacagcttccattgtatttctcagGATCCAACTCAGAAAAGGATGGAATGCACCACACGGTCACAAAGCACAGGGGAATCATGACCCTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCAATCCCCAAGGCAATTAAAGCCCAGATAGCTGACCTTCCTGCAGGCAGTAGTGGGACTATCCTAGTTGAACTCGATGAGgtaagtgggcggggttgcacccatagactcgcccttgtaggggaggagcc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GATCCAACTCAGAAAAGGATGGAATGCACCATACTGTCACCAAGCACAGGGGGATCATTACACTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCCATCCCCAAAGCAATCAAAGCTCAGATAGCAGATCTACCTGCAGGAAGTAGTGGGACTATCCTGGTTGAACTTGATGAG aactgtaatatttttctagcacaggatacagcttccattgtatttctcagGATCCAACTCAGAAAAGGATGGAATGCACCACACGGTCACAAAGCACAGGGGAATCATGACCCTCTACAGGCATCAGAAAGCAGCATTTGCTATCACCAGCAGGCGAGGTCCAATCCCCAAGGCAATTAAAGCCCAGATAGCTGACCTTCCTGCAGGCAGTAGTGGGACTATCCTAGTTGAACTCGATGAGgtaagtgggcggggttgcacccatagactcgcccttgtaggggaggagcc #### Btaf1_ID7250_29 --> 1 - 2 Original Alignment gTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTAGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTag tagggagaatagtagaatcagaccaaatactgcctgagctttgatttcaggTTGCAACATCAAGTAAAAAGGCACAATCTTATAGTGGCATCATATGATGTTGTCAGGAACGACATAGACTTTTTTaggtgagtcttacattaacataaacatatatcaagagcattgattcatgagg Alignment from CESAR gTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTAGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTag tagggagaatagtagaatcagaccaaatactgcctgagctttgatttcaggTTGCAACATCAAGTAAAAAGGCACAATCTTATAGTGGCATCATATGATGTTGTCAGGAACGACATAGACTTTTTTaggtgagtcttacattaacataaacatatatcaagagcattgattcatgagg Alignment from Spaln_aa2Genome GTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTAGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTAG tagggagaatagtagaatcagaccaaatactgcctgagctttgatttcagGTTGCAACATCAAGTAAAAAGGCACAATCTTATAGTGGCATCATATGATGTTGTCAGGAACGACATAGACTTTTTTAGgtgagtcttacattaacataaacatatatcaagagcattgattcatgagg Alignment from Spaln_nt2Genome GTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTAGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTAG tagggagaatagtagaatcagaccaaatactgcctgagctttgatttcagGTTGCAACATCAAGTAAAAAGGCACAATCTTATAGTGGCATCATATGATGTTGTCAGGAACGACATAGACTTTTTTAGgtgagtcttacattaacataaacatatatcaagagcattgattcatgagg Alignment from Pairagon GTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTAGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTAG tagggagaatagtagaatcagaccaaatactgcctgagctttgatttcagGTTGCAACATCAAGTAAAAAGGCACAATCTTATAGTGGCATCATATGATGTTGTCAGGAACGACATAGACTTTTTTAGgtgagtcttacattaacataaacatatatcaagagcattgattcatgagg Alignment from Exonerate_protein2genome GTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTAGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTAG tagggagaatagtagaatcagaccaaatactgcctgagctttgatttcagGTTGCAACATCAAGTAAAAAGGCACAATCTTATAGTGGCATCATATGATGTTGTCAGGAACGACATAGACTTTTTTAGgtgagtcttacattaacataaacatatatcaagagcattgattcatgagg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTAGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTAG tagggagaatagtagaatcagaccaaatactgcctgagctttgatttcagGTTGCAACATCAAGTAAAAAGGCACAATCTTATAGTGGCATCATATGATGTTGTCAGGAACGACATAGACTTTTTTAGgtgagtcttacattaacataaacatatatcaagagcattgattcatgagg #### Btaf1_ID7253_32 --> 2 - 0 Original Alignment gtGTCCTGGCAATGGACGCTCTGCACCGCCAAGTCCTGCCGTTCCTTCTCAGAAGAATGAAAGAAGATGTTTTGCAGGATCTTCCACCTAAAATTATTCAAGACTATTACTGTACTCTCAGCCCTCTCCAG gcagggagaatgggttcttgagtcctgattttcttcttctgtatttcaaggtGTACTAGCAATGGATGCTCTACAGCACCAAGTCTTGCCACTACTTTTGAGAAGAATGAAAGAAGCTGTATTGCATGATCTTCCACCCAAAATTATACAAGACTATTACTGTACTCTCAGCCCTCTTCAAgtaattactgccgtcattgttagtgtgctactatttgcattaaaaacaga Alignment from CESAR gtGTCCTGGCAATGGACGCTCTGCACCGCCAAGTCCTGCCGTTCCTTCTCAGAAGAATGAAAGAAGATGTTTTGCAGGATCTTCCACCTAAAATTATTCAAGACTATTACTGTACTCTCAGCCCTCTCCAG gcagggagaatgggttcttgagtcctgattttcttcttctgtatttcaaggtGTACTAGCAATGGATGCTCTACAGCACCAAGTCTTGCCACTACTTTTGAGAAGAATGAAAGAAGCTGTATTGCATGATCTTCCACCCAAAATTATACAAGACTATTACTGTACTCTCAGCCCTCTTCAAgtaattactgccgtcattgttagtgtgctactatttgcattaaaaacaga Alignment from Spaln_aa2Genome GTGTCCTGGCAATGGACGCTCTGCACCGCCAAGTCCTGCCGTTCCTTCTCAGAAGAATGAAAGAAGATGTTTTGCAGGATCTTCCACCTAAAATTATTCAAGACTATTACTGTACTCTCAGCCCTCTCCAG gcagggagaatgggttcttgagtcctgattttcttcttctgtatttcaagGTGTACTAGCAATGGATGCTCTACAGCACCAAGTCTTGCCACTACTTTTGAGAAGAATGAAAGAAGCTGTATTGCATGATCTTCCACCCAAAATTATACAAGACTATTACTGTACTCTCAGCCCTCTTCAAgtaattactgccgtcattgttagtgtgctactatttgcattaaaaacaga Alignment from Spaln_nt2Genome GTGTCCTGGCAATGGACGCTCTGCACCGCCAAGTCCTGCCGTTCCTTCTCAGAAGAATGAAAGAAGATGTTTTGCAGGATCTTCCACCTAAAATTATTCAAGACTATTACTGTACTCTCAGCCCTCTCCAG gcagggagaatgggttcttgagtcctgattttcttcttctgtatttcaagGTGTACTAGCAATGGATGCTCTACAGCACCAAGTCTTGCCACTACTTTTGAGAAGAATGAAAGAAGCTGTATTGCATGATCTTCCACCCAAAATTATACAAGACTATTACTGTACTCTCAGCCCTCTTCAAgtaattactgccgtcattgttagtgtgctactatttgcattaaaaacaga Alignment from Pairagon GTGTCCTGGCAATGGACGCTCTGCACCGCCAAGTCCTGCCGTTCCTTCTCAGAAGAATGAAAGAAGATGTTTTGCAGGATCTTCCACCTAAAATTATTCAAGACTATTACTGTACTCTCAGCCCTCTCCAG gcagggagaatgggttcttgagtcctgattttcttcttctgtatttcaagGTGTACTAGCAATGGATGCTCTACAGCACCAAGTCTTGCCACTACTTTTGAGAAGAATGAAAGAAGCTGTATTGCATGATCTTCCACCCAAAATTATACAAGACTATTACTGTACTCTCAGCCCTCTTCAAgtaattactgccgtcattgttagtgtgctactatttgcattaaaaacaga Alignment from Exonerate_protein2genome GTGTCCTGGCAATGGACGCTCTGCACCGCCAAGTCCTGCCGTTCCTTCTCAGAAGAATGAAAGAAGATGTTTTGCAGGATCTTCCACCTAAAATTATTCAAGACTATTACTGTACTCTCAGCCCTCTCCAG gcagggagaatgggttcttgagtcctgattttcttcttctgtatttcaagGTGTACTAGCAATGGATGCTCTACAGCACCAAGTCTTGCCACTACTTTTGAGAAGAATGAAAGAAGCTGTATTGCATGATCTTCCACCCAAAATTATACAAGACTATTACTGTACTCTCAGCCCTCTTCAAgtaattactgccgtcattgttagtgtgctactatttgcattaaaaacaga Alignment from Exonerate_coding2genome GTGTCCTGGCAATGGACGCTCTGCACCGCCAAGTCCTGCCGTTCCTTCTCAGAAGAATGAAAGAAGATGTTTTGCAGGATCTTCCACCTAAAATTATTCAAGACTATTACTGTACTCTCAGCCCTCTCCAG gcagggagaatgggttcttgagtcctgattttcttcttctgtatttcaagGTGTACTAGCAATGGATGCTCTACAGCACCAAGTCTTGCCACTACTTTTGAGAAGAATGAAAGAAGCTGTATTGCATGATCTTCCACCCAAAATTATACAAGACTATTACTGTACTCTCAGCCCTCTTCAAgtaattactgccgtcattgttagtgtgctactatttgcattaaaaacaga Alignment from GeneWise GTGTCCTGGCAATGGACGCTCTGCACCGCCAAGTCCTGCCGTTCCTTCTCAGAAGAATGAAAGAAGATGTTTTGCAGGATCTTCCACCTAAAATTATTCAAGACTATTACTGTACTCTCAGCCCTCTCCAG gcagggagaatgggttcttgagtcctgattttcttcttctgtatttcaagGTGTACTAGCAATGGATGCTCTACAGCACCAAGTCTTGCCACTACTTTTGAGAAGAATGAAAGAAGCTGTATTGCATGATCTTCCACCCAAAATTATACAAGACTATTACTGTACTCTCAGCCCTCTTCAAgtaattactgccgtcattgttagtgtgctactatttgcattaaaaacaga #### Btaf1_ID7256_35 --> 0 - 2 Original Alignment CTGCTGTTGGACTGTGGTTTGGGGAATGGCAGTTCTACAGAGAGTGGCACAGAGTCTGTTGTGGCACAGCACAGAATACTGATCTTCTGTCAGCTTAAAAGCATGCTTGATATAGTAGAACATGATCTGCTCAAGCCTCACCTGCCCTCTGTCACTTACTTGAGACTAGATGGCAGCATACCTCCTGGACAGCGGCATTCCATTGTTTCCcg ggactggatcaagcctcagtggagtgagacacctgttttttcttctttagCTGCTGTTGGACCGTGGTTTGGGGAATGGAAGTTCTACTGAGAGTGGCACAGAGTCTGTTGTGGCACAGCACAGAATACTGATCTTCTGCCAGCTTAAAAGCATGCTTGATATAGTAGAACATGATCTGCTTAAGCCTCACCTGCCCTCTGTCACTTACTTGAGACTAGATGGTATTATACCACCAGGACAGCGGCATTCCATTGTTTCCcagtgagcagtaaggtgatgctcaagtgcttgaagaacacattcaaagagag Alignment from CESAR CTGCTGTTGGACTGTGGTTTGGGGAATGGCAGTTCTACAGAGAGTGGCACAGAGTCTGTTGTGGCACAGCACAGAATACTGATCTTCTGTCAGCTTAAAAGCATGCTTGATATAGTAGAACATGATCTGCTCAAGCCTCACCTGCCCTCTGTCACTTACTTGAGACTAGATGGCAGCATACCTCCTGGACAGCGGCATTCCATTGTTTCCcg ggactggatcaagcctcagtggagtgagacacctgttttttcttctttagCTGCTGTTGGACCGTGGTTTGGGGAATGGAAGTTCTACTGAGAGTGGCACAGAGTCTGTTGTGGCACAGCACAGAATACTGATCTTCTGCCAGCTTAAAAGCATGCTTGATATAGTAGAACATGATCTGCTTAAGCCTCACCTGCCCTCTGTCACTTACTTGAGACTAGATGGTATTATACCACCAGGACAGCGGCATTCCATTGTTTCCcagtgagcagtaaggtgatgctcaagtgcttgaagaacacattcaaagagag Alignment from Spaln_aa2Genome CTGCTGTTGGACTGTGGTTTGGGGAATGGCAGTTCTACAGAGAGTGGCACAGAGTCTGTTGTGGCACAGCACAGAATACTGATCTTCTGTCAGCTTAAAAGCATGCTTGATATAGTAGAACATGATCTGCTCAAGCCTCACCTGCCCTCTGTCACTTACTTGAGACTAGATGGCAGCATACCTCCTGGACAGCGGCATTCCATTGTTTCCCG ggactggatcaagcctcagtggagtgagacacctgttttttcttctttagCTGCTGTTGGACCGTGGTTTGGGGAATGGAAGTTCTACTGAGAGTGGCACAGAGTCTGTTGTGGCACAGCACAGAATACTGATCTTCTGCCAGCTTAAAAGCATGCTTGATATAGTAGAACATGATCTGCTTAAGCCTCACCTGCCCTCTGTCACTTACTTGAGACTAGATGGTATTATACCACCAGGACAGCGGCATTCCATTGTTTCCCAgtgagcagtaaggtgatgctcaagtgcttgaagaacacattcaaagagag Alignment from Spaln_nt2Genome CTGCTGTTGGACTGTGGTTTGGGGAATGGCAGTTCTACAGAGAGTGGCACAGAGTCTGTTGTGGCACAGCACAGAATACTGATCTTCTGTCAGCTTAAAAGCATGCTTGATATAGTAGAACATGATCTGCTCAAGCCTCACCTGCCCTCTGTCACTTACTTGAGACTAGATGGCAGCATACCTCCTGGACAGCGGCATTCCATTGTTTCCCG ggactggatcaagcctcagtggagtgagacacctgttttttcttctttagCTGCTGTTGGACCGTGGTTTGGGGAATGGAAGTTCTACTGAGAGTGGCACAGAGTCTGTTGTGGCACAGCACAGAATACTGATCTTCTGCCAGCTTAAAAGCATGCTTGATATAGTAGAACATGATCTGCTTAAGCCTCACCTGCCCTCTGTCACTTACTTGAGACTAGATGGTATTATACCACCAGGACAGCGGCATTCCATTGTTTCCCAgtgagcagtaaggtgatgctcaagtgcttgaagaacacattcaaagagag Alignment from Pairagon CTGCTGTTGGACTGTGGTTTGGGGAATGGCAGTTCTACAGAGAGTGGCACAGAGTCTGTTGTGGCACAGCACAGAATACTGATCTTCTGTCAGCTTAAAAGCATGCTTGATATAGTAGAACATGATCTGCTCAAGCCTCACCTGCCCTCTGTCACTTACTTGAGACTAGATGGCAGCATACCTCCTGGACAGCGGCATTCCATTGTTTCCCG ggactggatcaagcctcagtggagtgagacacctgttttttcttctttagCTGCTGTTGGACCGTGGTTTGGGGAATGGAAGTTCTACTGAGAGTGGCACAGAGTCTGTTGTGGCACAGCACAGAATACTGATCTTCTGCCAGCTTAAAAGCATGCTTGATATAGTAGAACATGATCTGCTTAAGCCTCACCTGCCCTCTGTCACTTACTTGAGACTAGATGGTATTATACCACCAGGACAGCGGCATTCCATTGTTTCCCAgtgagcagtaaggtgatgctcaagtgcttgaagaacacattcaaagagag Alignment from Exonerate_protein2genome CTGCTGTTGGACTGTGGTTTGGGGAATGGCAGTTCTACAGAGAGTGGCACAGAGTCTGTTGTGGCACAGCACAGAATACTGATCTTCTGTCAGCTTAAAAGCATGCTTGATATAGTAGAACATGATCTGCTCAAGCCTCACCTGCCCTCTGTCACTTACTTGAGACTAGATGGCAGCATACCTCCTGGACAGCGGCATTCCATTGTTTCCCG ggactggatcaagcctcagtggagtgagacacctgttttttcttctttagCTGCTGTTGGACCGTGGTTTGGGGAATGGAAGTTCTACTGAGAGTGGCACAGAGTCTGTTGTGGCACAGCACAGAATACTGATCTTCTGCCAGCTTAAAAGCATGCTTGATATAGTAGAACATGATCTGCTTAAGCCTCACCTGCCCTCTGTCACTTACTTGAGACTAGATGGTATTATACCACCAGGACAGCGGCATTCCATTGTTTCCCAgtgagcagtaaggtgatgctcaagtgcttgaagaacacattcaaagagag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTGCTGTTGGACTGTGGTTTGGGGAATGGCAGTTCTACAGAGAGTGGCACAGAGTCTGTTGTGGCACAGCACAGAATACTGATCTTCTGTCAGCTTAAAAGCATGCTTGATATAGTAGAACATGATCTGCTCAAGCCTCACCTGCCCTCTGTCACTTACTTGAGACTAGATGGCAGCATACCTCCTGGACAGCGGCATTCCATTGTTTCCCG ggactggatcaagcctcagtggagtgagacacctgttttttcttctttagCTGCTGTTGGACCGTGGTTTGGGGAATGGAAGTTCTACTGAGAGTGGCACAGAGTCTGTTGTGGCACAGCACAGAATACTGATCTTCTGCCAGCTTAAAAGCATGCTTGATATAGTAGAACATGATCTGCTTAAGCCTCACCTGCCCTCTGTCACTTACTTGAGACTAGATGGTATTATACCACCAGGACAGCGGCATTCCATTGTTTCCCAgtgagcagtaaggtgatgctcaagtgcttgaagaacacattcaaagagag #### Btaf1_ID7258_37 --> 0 - 0 Original Alignment AAACGTGTGGTTAATGTCTACCGGTTGATAACCAGAGGAACACTAGAAGAAAAGATAATGGGCTTGCAGAAATTCAAGATGAACATCGCAAATACTGTTATTAGCCAAGAAAACTCTAGCTTACAGAGTATGGGCACTGATCAACTTCTTGACCTGTTCACTCTAGATAAG taggcaccgtgagtctgacaagttcatgcaccattttctcaattccacagAAACGTGTGGTTAATGTCTACCGGTTGATAACTCGAGGAACACTAGAAGACAAGATAATGGGTTTGCAGAAGTTCAAGATGAACATTGCAAATACTGTTATTAGCCAAGAGAACTCTAGCTTACAGAGTATGGGCACTGATCAACTTCTTGACCTATTTACCCTGGATAAAgtgtgcacagaatgagtggcattacagtgcattagtcacaggattgttgg Alignment from CESAR AAACGTGTGGTTAATGTCTACCGGTTGATAACCAGAGGAACACTAGAAGAAAAGATAATGGGCTTGCAGAAATTCAAGATGAACATCGCAAATACTGTTATTAGCCAAGAAAACTCTAGCTTACAGAGTATGGGCACTGATCAACTTCTTGACCTGTTCACTCTAGATAAG taggcaccgtgagtctgacaagttcatgcaccattttctcaattccacagAAACGTGTGGTTAATGTCTACCGGTTGATAACTCGAGGAACACTAGAAGACAAGATAATGGGTTTGCAGAAGTTCAAGATGAACATTGCAAATACTGTTATTAGCCAAGAGAACTCTAGCTTACAGAGTATGGGCACTGATCAACTTCTTGACCTATTTACCCTGGATAAAgtgtgcacagaatgagtggcattacagtgcattagtcacaggattgttgg Alignment from Spaln_aa2Genome AAACGTGTGGTTAATGTCTACCGGTTGATAACCAGAGGAACACTAGAAGAAAAGATAATGGGCTTGCAGAAATTCAAGATGAACATCGCAAATACTGTTATTAGCCAAGAAAACTCTAGCTTACAGAGTATGGGCACTGATCAACTTCTTGACCTGTTCACTCTAGATAAG taggcaccgtgagtctgacaagttcatgcaccattttctcaattccacagAAACGTGTGGTTAATGTCTACCGGTTGATAACTCGAGGAACACTAGAAGACAAGATAATGGGTTTGCAGAAGTTCAAGATGAACATTGCAAATACTGTTATTAGCCAAGAGAACTCTAGCTTACAGAGTATGGGCACTGATCAACTTCTTGACCTATTTACCCTGGATAAAgtgtgcacagaatgagtggcattacagtgcattagtcacaggattgttgg Alignment from Spaln_nt2Genome AAACGTGTGGTTAATGTCTACCGGTTGATAACCAGAGGAACACTAGAAGAAAAGATAATGGGCTTGCAGAAATTCAAGATGAACATCGCAAATACTGTTATTAGCCAAGAAAACTCTAGCTTACAGAGTATGGGCACTGATCAACTTCTTGACCTGTTCACTCTAGATAAG taggcaccgtgagtctgacaagttcatgcaccattttctcaattccacagAAACGTGTGGTTAATGTCTACCGGTTGATAACTCGAGGAACACTAGAAGACAAGATAATGGGTTTGCAGAAGTTCAAGATGAACATTGCAAATACTGTTATTAGCCAAGAGAACTCTAGCTTACAGAGTATGGGCACTGATCAACTTCTTGACCTATTTACCCTGGATAAAgtgtgcacagaatgagtggcattacagtgcattagtcacaggattgttgg Alignment from Pairagon AAACGTGTGGTTAATGTCTACCGGTTGATAACCAGAGGAACACTAGAAGAAAAGATAATGGGCTTGCAGAAATTCAAGATGAACATCGCAAATACTGTTATTAGCCAAGAAAACTCTAGCTTACAGAGTATGGGCACTGATCAACTTCTTGACCTGTTCACTCTAGATAAG taggcaccgtgagtctgacaagttcatgcaccattttctcaattccacagAAACGTGTGGTTAATGTCTACCGGTTGATAACTCGAGGAACACTAGAAGACAAGATAATGGGTTTGCAGAAGTTCAAGATGAACATTGCAAATACTGTTATTAGCCAAGAGAACTCTAGCTTACAGAGTATGGGCACTGATCAACTTCTTGACCTATTTACCCTGGATAAAgtgtgcacagaatgagtggcattacagtgcattagtcacaggattgttgg Alignment from Exonerate_protein2genome AAACGTGTGGTTAATGTCTACCGGTTGATAACCAGAGGAACACTAGAAGAAAAGATAATGGGCTTGCAGAAATTCAAGATGAACATCGCAAATACTGTTATTAGCCAAGAAAACTCTAGCTTACAGAGTATGGGCACTGATCAACTTCTTGACCTGTTCACTCTAGATAAG taggcaccgtgagtctgacaagttcatgcaccattttctcaattccacagAAACGTGTGGTTAATGTCTACCGGTTGATAACTCGAGGAACACTAGAAGACAAGATAATGGGTTTGCAGAAGTTCAAGATGAACATTGCAAATACTGTTATTAGCCAAGAGAACTCTAGCTTACAGAGTATGGGCACTGATCAACTTCTTGACCTATTTACCCTGGATAAAgtgtgcacagaatgagtggcattacagtgcattagtcacaggattgttgg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AAACGTGTGGTTAATGTCTACCGGTTGATAACCAGAGGAACACTAGAAGAAAAGATAATGGGCTTGCAGAAATTCAAGATGAACATCGCAAATACTGTTATTAGCCAAGAAAACTCTAGCTTACAGAGTATGGGCACTGATCAACTTCTTGACCTGTTCACTCTAGATAAG taggcaccgtgagtctgacaagttcatgcaccattttctcaattccacagAAACGTGTGGTTAATGTCTACCGGTTGATAACTCGAGGAACACTAGAAGACAAGATAATGGGTTTGCAGAAGTTCAAGATGAACATTGCAAATACTGTTATTAGCCAAGAGAACTCTAGCTTACAGAGTATGGGCACTGATCAACTTCTTGACCTATTTACCCTGGATAAAgtgtgcacagaatgagtggcattacagtgcattagtcacaggattgttgg #### Btrc_ID9403_2 --> 0 - 0 Original Alignment TGCTCTATGCCCAGGTCTCTGTGGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCCTTCGCTGCGATGCCTGTATAACCCAGGGACTGGCGCACTCACAGCTTTCCAG caccttccccttcacctagggctgatgccagcattttttcttttatttagTGCTCTATGCCAAGATCATTGTGGTTGGGTTGCTCAAGCTTTGCAGATAGCATGCCATCTCTGCGATGCCTCTATAACCCAGGGACAGGTGCTCTCACAGCCTTTCAAgtaagtttctggtctctatggatttccacttggtaaagatataatttatc Alignment from CESAR TGCTCTATGCCCAGGTCTCTGTGGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCCTTCGCTGCGATGCCTGTATAACCCAGGGACTGGCGCACTCACAGCTTTCCAG caccttccccttcacctagggctgatgccagcattttttcttttatttagTGCTCTATGCCAAGATCATTGTGGTTGGGTTGCTCAAGCTTTGCAGATAGCATGCCATCTCTGCGATGCCTCTATAACCCAGGGACAGGTGCTCTCACAGCCTTTCAAgtaagtttctggtctctatggatttccacttggtaaagatataatttatc Alignment from Spaln_aa2Genome TGCTCTATGCCCAGGTCTCTGTGGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCCTTCGCTGCGATGCCTGTATAACCCAGGGACTGGCGCACTCACAGCTTTCCAG caccttccccttcacctagggctgatgccagcattttttcttttatttagTGCTCTATGCCAAGATCATTGTGGTTGGGTTGCTCAAGCTTTGCAGATAGCATGCCATCTCTGCGATGCCTCTATAACCCAGGGACAGGTGCTCTCACAGCCTTTCAAgtaagtttctggtctctatggatttccacttggtaaagatataatttatc Alignment from Spaln_nt2Genome TGCTCTATGCCCAGGTCTCTGTGGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCCTTCGCTGCGATGCCTGTATAACCCAGGGACTGGCGCACTCACAGCTTTCCAG caccttccccttcacctagggctgatgccagcattttttcttttatttagTGCTCTATGCCAAGATCATTGTGGTTGGGTTGCTCAAGCTTTGCAGATAGCATGCCATCTCTGCGATGCCTCTATAACCCAGGGACAGGTGCTCTCACAGCCTTTCAAgtaagtttctggtctctatggatttccacttggtaaagatataatttatc Alignment from Pairagon TGCTCTATGCCCAGGTCTCTGTGGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCCTTCGCTGCGATGCCTGTATAACCCAGGGACTGGCGCACTCACAGCTTTCCAG caccttccccttcacctagggctgatgccagcattttttcttttatttagTGCTCTATGCCAAGATCATTGTGGTTGGGTTGCTCAAGCTTTGCAGATAGCATGCCATCTCTGCGATGCCTCTATAACCCAGGGACAGGTGCTCTCACAGCCTTTCAAgtaagtttctggtctctatggatttccacttggtaaagatataatttatc Alignment from Exonerate_protein2genome TGCTCTATGCCCAGGTCTCTGTGGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCCTTCGCTGCGATGCCTGTATAACCCAGGGACTGGCGCACTCACAGCTTTCCAG caccttccccttcacctagggctgatgccagcattttttcttttatttagTGCTCTATGCCAAGATCATTGTGGTTGGGTTGCTCAAGCTTTGCAGATAGCATGCCATCTCTGCGATGCCTCTATAACCCAGGGACAGGTGCTCTCACAGCCTTTCAAgtaagtttctggtctctatggatttccacttggtaaagatataatttatc Alignment from Exonerate_coding2genome TGCTCTATGCCCAGGTCTCTGTGGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCCTTCGCTGCGATGCCTGTATAACCCAGGGACTGGCGCACTCACAGCTTTCCAG caccttccccttcacctagggctgatgccagcattttttcttttatttagTGCTCTATGCCAAGATCATTGTGGTTGGGTTGCTCAAGCTTTGCAGATAGCATGCCATCTCTGCGATGCCTCTATAACCCAGGGACAGGTGCTCTCACAGCCTTTCAAgtaagtttctggtctctatggatttccacttggtaaagatataatttatc Alignment from GeneWise TGCTCTATGCCCAGGTCTCTGTGGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCCTTCGCTGCGATGCCTGTATAACCCAGGGACTGGCGCACTCACAGCTTTCCAG caccttccccttcacctagggctgatgccagcattttttcttttatttagTGCTCTATGCCAAGATCATTGTGGTTGGGTTGCTCAAGCTTTGCAGATAGCATGCCATCTCTGCGATGCCTCTATAACCCAGGGACAGGTGCTCTCACAGCCTTTCAAgtaagtttctggtctctatggatttccacttggtaaagatataatttatc #### Btrc_ID9459_9 --> 0 - 2 Original Alignment ATCTGGGATAAAAGCACACTGGAATGCAAGCGGATTCTCACGGGCCACACGGGCTCCGTCCTGTGTCTGCAGTACGATGAGAGGGTGATCATCACAGGCTCCTCAGACTCCACCGTCag tccttgagagttgaatcactacagtgtcctgttgtcacttttctctttagAACTGGGATAAAACAACACTCAAATGTAAGTGGATTCTAACAGGCCATACGGATTCAGTCCTTTGCCTGCAGTATGATGAGAGGGTAACAATCACAGGCTCATCAGATACAACTGTCaggtacatattagctgcattacattaaatgatgagctaccagcttaagttgt Alignment from CESAR ATCTGGGATAAAAGCACACTGGAATGCAAGCGGATTCTCACGGGCCACACGGGCTCCGTCCTGTGTCTGCAGTACGATGAGAGGGTGATCATCACAGGCTCCTCAGACTCCACCGTCag tccttgagagttgaatcactacagtgtcctgttgtcacttttctctttagAACTGGGATAAAACAACACTCAAATGTAAGTGGATTCTAACAGGCCATACGGATTCAGTCCTTTGCCTGCAGTATGATGAGAGGGTAACAATCACAGGCTCATCAGATACAACTGTCaggtacatattagctgcattacattaaatgatgagctaccagcttaagttgt Alignment from Spaln_aa2Genome ATCTGGGATAAAAGCACACTGGAATGCAAGCGGATTCTCACGGGCCACACGGGCTCCGTCCTGTGTCTGCAGTACGATGAGAGGGTGATCATCACAGGCTCCTCAGACTCCACCGTCAG tccttgagagttgaatcactacagtgtcctgttgtcacttttctctttagAACTGGGATAAAACAACACTCAAATGTAAGTGGATTCTAACAGGCCATACGGATTCAGTCCTTTGCCTGCAGTATGATGAGAGGGTAACAATCACAGGCTCATCAGATACAACTGTCAGgtacatattagctgcattacattaaatgatgagctaccagcttaagttgt Alignment from Spaln_nt2Genome ATCTGGGATAAAAGCACACTGGAATGCAAGCGGATTCTCACGGGCCACACGGGCTCCGTCCTGTGTCTGCAGTACGATGAGAGGGTGATCATCACAGGCTCCTCAGACTCCACCGTCAG tccttgagagttgaatcactacagtgtcctgttgtcacttttctctttagAACTGGGATAAAACAACACTCAAATGTAAGTGGATTCTAACAGGCCATACGGATTCAGTCCTTTGCCTGCAGTATGATGAGAGGGTAACAATCACAGGCTCATCAGATACAACTGTCAGgtacatattagctgcattacattaaatgatgagctaccagcttaagttgt Alignment from Pairagon ATCTGGGATAAAAGCACACTGGAATGCAAGCGGATTCTCACGGGCCACACGGGCTCCGTCCTGTGTCTGCAGTACGATGAGAGGGTGATCATCACAGGCTCCTCAGACTCCACCGTCAG tccttgagagttgaatcactacagtgtcctgttgtcacttttctctttagAACTGGGATAAAACAACACTCAAATGTAAGTGGATTCTAACAGGCCATACGGATTCAGTCCTTTGCCTGCAGTATGATGAGAGGGTAACAATCACAGGCTCATCAGATACAACTGTCAGgtacatattagctgcattacattaaatgatgagctaccagcttaagttgt Alignment from Exonerate_protein2genome ATCTGGGATAAAAGCACACTGGAATGCAAGCGGATTCTCACGGGCCACACGGGCTCCGTCCTGTGTCTGCAGTACGATGAGAGGGTGATCATCACAGGCTCCTCAGACTCCACCGTCAG tccttgagagttgaatcactacagtgtcctgttgtcacttttctctttagAACTGGGATAAAACAACACTCAAATGTAAGTGGATTCTAACAGGCCATACGGATTCAGTCCTTTGCCTGCAGTATGATGAGAGGGTAACAATCACAGGCTCATCAGATACAACTGTCAGgtacatattagctgcattacattaaatgatgagctaccagcttaagttgt Alignment from Exonerate_coding2genome tccttgagagttgaatcactacagtgtcctgttgtcacttttctctttagaactgggataaaacaacactcaaatgtaagtggattctaacaggccatacggattcagtcctttgcctgcagtatgatgagagggtaacaatcacaggctcatcagatacaactgtcaggtacatattagctgcattacattaaatgatgagctaccagcttaagttgt Alignment from GeneWise ATCTGGGATAAAAGCACACTGGAATGCAAGCGGATTCTCACGGGCCACACGGGCTCCGTCCTGTGTCTGCAGTACGATGAGAGGGTGATCATCACAGGCTCCTCAGACTCCACCGTC-- tccttgagagttgaatcactacagtgtcctgttgtcacttttctctttagAACTGGGATAAAACAACACTCAAATGTAAGTGGATTCTAACAGGCCATACGGATTCAGTCCTTTGCCTGCAGTATGATGAGAGGGTAACAATCACAGGCTCATCAGATACAACTGTCAGgtacatattagctgcattacattaaatgatgagctaccagcttaagttgt #### Btrc_ID9463_12 --> 1 - 2 Original Alignment gCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATgg acttgttgtgaatactgtaacttactttattgagctatttcttttcaaaggCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGGTTTGATAACAAAAGGATCGTAAGCAGAACGTATGATgggtttgctcactggtaatgtcttttaatcagagaaagagtttgaagacaca Alignment from CESAR gCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATgg acttgttgtgaatactgtaacttactttattgagctatttcttttcaaaggCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGGTTTGATAACAAAAGGATCGTAAGCAGAACGTATGATgggtttgctcactggtaatgtcttttaatcagagaaagagtttgaagacaca Alignment from Spaln_aa2Genome GCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGG acttgttgtgaatactgtaacttactttattgagctatttcttttcaaagGCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGGTTTGATAACAAAAGGATCGTAAGCAGAACGTATGATGGgtttgctcactggtaatgtcttttaatcagagaaagagtttgaagacaca Alignment from Spaln_nt2Genome GCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGG acttgttgtgaatactgtaacttactttattgagctatttcttttcaaagGCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGGTTTGATAACAAAAGGATCGTAAGCAGAACGTATGATGGgtttgctcactggtaatgtcttttaatcagagaaagagtttgaagacaca Alignment from Pairagon GCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGG acttgttgtgaatactgtaacttactttattgagctatttcttttcaaagGCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGGTTTGATAACAAAAGGATCGTAAGCAGAACGTATGATGGgtttgctcactggtaatgtcttttaatcagagaaagagtttgaagacaca Alignment from Exonerate_protein2genome GCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGG acttgttgtgaatactgtaacttactttattgagctatttcttttcaaagGCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGGTTTGATAACAAAAGGATCGTAAGCAGAACGTATGATGGgtttgctcactggtaatgtcttttaatcagagaaagagtttgaagacaca Alignment from Exonerate_coding2genome GCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGG acttgttgtgaatactgtaacttactttattgagctatttcttttcaaagGCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGGTTTGATAACAAAAGGATCGTAAGCAGAACGTATGATGGgtttgctcactggtaatgtcttttaatcagagaaagagtttgaagacaca Alignment from GeneWise GCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGG acttgttgtgaatactgtaacttactttattgagctatttcttttcaaagGCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGGTTTGATAACAAAAGGATCGTAAGCAGAACGTATGATGGgtttgctcactggtaatgtcttttaatcagagaaagagtttgaagacaca #### Btrc_ID9464_13 --> 1 - 0 Original Alignment gAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTG cccttgattccccatgccacaagataattccaggtctttgtattggataggAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCACGTGCTCCAGCGGGGACTCTCTGTCTGCGGACACTTGTGgtaacctttgctcatgatgttgactggatgtgtaattaagatctctgtac Alignment from CESAR gAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTG cccttgattccccatgccacaagataattccaggtctttgtattggataggAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCACGTGCTCCAGCGGGGACTCTCTGTCTGCGGACACTTGTGgtaacctttgctcatgatgttgactggatgtgtaattaagatctctgtac Alignment from Spaln_aa2Genome GAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTG cccttgattccccatgccacaagataattccaggtctttgtattggatagGAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCACGTGCTCCAGCGGGGACTCTCTGTCTGCGGACACTTGTGgtaacctttgctcatgatgttgactggatgtgtaattaagatctctgtac Alignment from Spaln_nt2Genome GAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTG cccttgattccccatgccacaagataattccaggtctttgtattggatagGAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCACGTGCTCCAGCGGGGACTCTCTGTCTGCGGACACTTGTGgtaacctttgctcatgatgttgactggatgtgtaattaagatctctgtac Alignment from Pairagon GAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTG cccttgattccccatgccacaagataattccaggtctttgtattggatagGAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCACGTGCTCCAGCGGGGACTCTCTGTCTGCGGACACTTGTGgtaacctttgctcatgatgttgactggatgtgtaattaagatctctgtac Alignment from Exonerate_protein2genome GAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTG cccttgattccccatgccacaagataattccaggtctttgtattggatagGAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCACGTGCTCCAGCGGGGACTCTCTGTCTGCGGACACTTGTGgtaacctttgctcatgatgttgactggatgtgtaattaagatctctgtac Alignment from Exonerate_coding2genome GAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTG cccttgattccccatgccacaagataattccaggtctttgtattggatagGAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCACGTGCTCCAGCGGGGACTCTCTGTCTGCGGACACTTGTGgtaacctttgctcatgatgttgactggatgtgtaattaagatctctgtac Alignment from GeneWise GAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTG cccttgattccccatgccacaagataattccaggtctttgtattggatagGAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCACGTGCTCCAGCGGGGACTCTCTGTCTGCGGACACTTGTGgtaacctttgctcatgatgttgactggatgtgtaattaagatctctgtac #### C030046E11Rik_ID6293_7 --> 0 - 2 Original Alignment CAACTTCATGGAGTTTGGCCACAAGATGTTATTGATGGGACTTGTGTTGCAGTAAACAACAAATACCGACTGATGGCCTTTGGCTGTGCAag agggtcacatctacttcctattaccattgctgcccatccccccaccacagCAACTTCATGGAGTTTGGCCACAAGATGTTATTGATGGTACCTGTGTTGCAGTAAACAACAAATACAGATTGATGGCATTTGGTTGTACAaggtacccgtatgtttgttttgctgatctaatattgtagtaaccagcactca Alignment from CESAR CAACTTCATGGAGTTTGGCCACAAGATGTTATTGATGGGACTTGTGTTGCAGTAAACAACAAATACCGACTGATGGCCTTTGGCTGTGCAag agggtcacatctacttcctattaccattgctgcccatccccccaccacagCAACTTCATGGAGTTTGGCCACAAGATGTTATTGATGGTACCTGTGTTGCAGTAAACAACAAATACAGATTGATGGCATTTGGTTGTACAaggtacccgtatgtttgttttgctgatctaatattgtagtaaccagcactca Alignment from Spaln_aa2Genome CAACTTCATGGAGTTTGGCCACAAGATGTTATTGATGGGACTTGTGTTGCAGTAAACAACAAATACCGACTGATGGCCTTTGGCTGTGCAAG agggtcacatctacttcctattaccattgctgcccatccccccaccacagCAACTTCATGGAGTTTGGCCACAAGATGTTATTGATGGTACCTGTGTTGCAGTAAACAACAAATACAGATTGATGGCATTTGGTTGTACAAGgtacccgtatgtttgttttgctgatctaatattgtagtaaccagcactca Alignment from Spaln_nt2Genome CAACTTCATGGAGTTTGGCCACAAGATGTTATTGATGGGACTTGTGTTGCAGTAAACAACAAATACCGACTGATGGCCTTTGGCTGTGCAAG agggtcacatctacttcctattaccattgctgcccatccccccaccacagCAACTTCATGGAGTTTGGCCACAAGATGTTATTGATGGTACCTGTGTTGCAGTAAACAACAAATACAGATTGATGGCATTTGGTTGTACAAGgtacccgtatgtttgttttgctgatctaatattgtagtaaccagcactca Alignment from Pairagon CAACTTCATGGAGTTTGGCCACAAGATGTTATTGATGGGACTTGTGTTGCAGTAAACAACAAATACCGACTGATGGCCTTTGGCTGTGCAAG agggtcacatctacttcctattaccattgctgcccatccccccaccacagCAACTTCATGGAGTTTGGCCACAAGATGTTATTGATGGTACCTGTGTTGCAGTAAACAACAAATACAGATTGATGGCATTTGGTTGTACAAGgtacccgtatgtttgttttgctgatctaatattgtagtaaccagcactca Alignment from Exonerate_protein2genome CAACTTCATGGAGTTTGGCCACAAGATGTTATTGATGGGACTTGTGTTGCAGTAAACAACAAATACCGACTGATGGCCTTTGGCTGTGCAAG agggtcacatctacttcctattaccattgctgcccatccccccaccacagCAACTTCATGGAGTTTGGCCACAAGATGTTATTGATGGTACCTGTGTTGCAGTAAACAACAAATACAGATTGATGGCATTTGGTTGTACAAGgtacccgtatgtttgttttgctgatctaatattgtagtaaccagcactca Alignment from Exonerate_coding2genome CAACTTCATGGAGTTTGGCCACAAGATGTTATTGATGGGACTTGTGTTGCAGTAAACAACAAATACCGACTGATGGCCTTTGGCTGTGCAAG agggtcacatctacttcctattaccattgctgcccatccccccaccacagCAACTTCATGGAGTTTGGCCACAAGATGTTATTGATGGTACCTGTGTTGCAGTAAACAACAAATACAGATTGATGGCATTTGGTTGTACAAGgtacccgtatgtttgttttgctgatctaatattgtagtaaccagcactca Alignment from GeneWise CAACTTCATGGAGTTTGGCCACAAGATGTTATTGATGGGACTTGTGTTGCAGTAAACAACAAATACCGACTGATGGCCTTTGGCTGTGCAAG agggtcacatctacttcctattaccattgctgcccatccccccaccacagCAACTTCATGGAGTTTGGCCACAAGATGTTATTGATGGTACCTGTGTTGCAGTAAACAACAAATACAGATTGATGGCATTTGGTTGTACAAGgtacccgtatgtttgttttgctgatctaatattgtagtaaccagcactca #### C030046E11Rik_ID6296_10 --> 1 - 0 Original Alignment tTACAGGTCAGATGGTACCAAAAAAGATCCCCTTAAGATCAACTCCATG gtagtagtgagactgagtattcataaaaccaggtatgcttgctcttgcagtTACAGGTCAGATGGTACTAAAAAAGATCCCCTTAAGATCAATTCAATGgtaagttttggaaactctacatgatctaaaaattggaccctgtcacaaaa Alignment from CESAR tTACAGGTCAGATGGTACCAAAAAAGATCCCCTTAAGATCAACTCCATG gtagtagtgagactgagtattcataaaaccaggtatgcttgctcttgcagtTACAGGTCAGATGGTACTAAAAAAGATCCCCTTAAGATCAATTCAATGgtaagttttggaaactctacatgatctaaaaattggaccctgtcacaaaa Alignment from Spaln_aa2Genome TTACAGGTCAGATGGTACCAAAAAAGATCCCCTTAAGATCAACTCCATG gtagtagtgagactgagtattcataaaaccaggtatgcttgctcttgcagTTACAGGTCAGATGGTACTAAAAAAGATCCCCTTAAGATCAATTCAATGgtaagttttggaaactctacatgatctaaaaattggaccctgtcacaaaa Alignment from Spaln_nt2Genome TTACAGGTCAGATGGTACCAAAAAAGATCCCCTTAAGATCAACTCCATG gtagtagtgagactgagtattcataaaaccaggtatgcttgctcttgcagTTACAGGTCAGATGGTACTAAAAAAGATCCCCTTAAGATCAATTCAATGgtaagttttggaaactctacatgatctaaaaattggaccctgtcacaaaa Alignment from Pairagon TTACAGGTCAGATGGTACCAAAAAAGATCCCCTTAAGATCAACTCCATG gtagtagtgagactgagtattcataaaaccaggtatgcttgctcttgcagTTACAGGTCAGATGGTACTAAAAAAGATCCCCTTAAGATCAATTCAATGgtaagttttggaaactctacatgatctaaaaattggaccctgtcacaaaa Alignment from Exonerate_protein2genome TTACAGGTCAGATGGTACCAAAAAAGATCCCCTTAAGATCAACTCCATG gtagtagtgagactgagtattcataaaaccaggtatgcttgctcttgcagTTACAGGTCAGATGGTACTAAAAAAGATCCCCTTAAGATCAATTCAATGgtaagttttggaaactctacatgatctaaaaattggaccctgtcacaaaa Alignment from Exonerate_coding2genome TTACAGGTCAGATGGTACCAAAAAAGATCCCCTTAAGATCAACTCCATG gtagtagtgagactgagtattcataaaaccaggtatgcttgctcttgcagTTACAGGTCAGATGGTACTAAAAAAGATCCCCTTAAGATCAATTCAATGgtaagttttggaaactctacatgatctaaaaattggaccctgtcacaaaa Alignment from GeneWise TTACAGGTCAGATGGTACCAAAAAAGATCCCCTTAAGATCAACTCCATG gtagtagtgagactgagtattcataaaaccaggtatgcttgctcttgcagTTACAGGTCAGATGGTACTAAAAAAGATCCCCTTAAGATCAATTCAATGgtaagttttggaaactctacatgatctaaaaattggaccctgtcacaaaa #### C030046E11Rik_ID6301_15 --> 0 - 0 Original Alignment GAGCAAAATATGATTGTGACTGGTGGCTTAGCCTGGTGGGATGACTTTATGGTCCTTGCGTGTTACAACTTAAGTGACCGTCAAGAAGAG aaaagtatggtatggtgctgacactgaggtgacattgctttgctttttagGAGCAAAAGATGATTGTAACTGGTGGCCTAGTCTGGTGGGATGATTTTATGGTTCTTGCATGTTACAATTTAAGTGATCGTCAAGAAGAAgtgagtgtgtttctaaggttccggaatgaatagtcaccaactattaaatc Alignment from CESAR GAGCAAAATATGATTGTGACTGGTGGCTTAGCCTGGTGGGATGACTTTATGGTCCTTGCGTGTTACAACTTAAGTGACCGTCAAGAAGAG aaaagtatggtatggtgctgacactgaggtgacattgctttgctttttagGAGCAAAAGATGATTGTAACTGGTGGCCTAGTCTGGTGGGATGATTTTATGGTTCTTGCATGTTACAATTTAAGTGATCGTCAAGAAGAAgtgagtgtgtttctaaggttccggaatgaatagtcaccaactattaaatc Alignment from Spaln_aa2Genome GAGCAAAATATGATTGTGACTGGTGGCTTAGCCTGGTGGGATGACTTTATGGTCCTTGCGTGTTACAACTTAAGTGACCGTCAAGAAGAG aaaagtatggtatggtgctgacactgaggtgacattgctttgctttttagGAGCAAAAGATGATTGTAACTGGTGGCCTAGTCTGGTGGGATGATTTTATGGTTCTTGCATGTTACAATTTAAGTGATCGTCAAGAAGAAgtgagtgtgtttctaaggttccggaatgaatagtcaccaactattaaatc Alignment from Spaln_nt2Genome GAGCAAAATATGATTGTGACTGGTGGCTTAGCCTGGTGGGATGACTTTATGGTCCTTGCGTGTTACAACTTAAGTGACCGTCAAGAAGAG aaaagtatggtatggtgctgacactgaggtgacattgctttgctttttagGAGCAAAAGATGATTGTAACTGGTGGCCTAGTCTGGTGGGATGATTTTATGGTTCTTGCATGTTACAATTTAAGTGATCGTCAAGAAGAAgtgagtgtgtttctaaggttccggaatgaatagtcaccaactattaaatc Alignment from Pairagon GAGCAAAATATGATTGTGACTGGTGGCTTAGCCTGGTGGGATGACTTTATGGTCCTTGCGTGTTACAACTTAAGTGACCGTCAAGAAGAG aaaagtatggtatggtgctgacactgaggtgacattgctttgctttttagGAGCAAAAGATGATTGTAACTGGTGGCCTAGTCTGGTGGGATGATTTTATGGTTCTTGCATGTTACAATTTAAGTGATCGTCAAGAAGAAgtgagtgtgtttctaaggttccggaatgaatagtcaccaactattaaatc Alignment from Exonerate_protein2genome GAGCAAAATATGATTGTGACTGGTGGCTTAGCCTGGTGGGATGACTTTATGGTCCTTGCGTGTTACAACTTAAGTGACCGTCAAGAAGAG aaaagtatggtatggtgctgacactgaggtgacattgctttgctttttagGAGCAAAAGATGATTGTAACTGGTGGCCTAGTCTGGTGGGATGATTTTATGGTTCTTGCATGTTACAATTTAAGTGATCGTCAAGAAGAAgtgagtgtgtttctaaggttccggaatgaatagtcaccaactattaaatc Alignment from Exonerate_coding2genome GAGCAAAATATGATTGTGACTGGTGGCTTAGCCTGGTGGGATGACTTTATGGTCCTTGCGTGTTACAACTTAAGTGACCGTCAAGAAGAG aaaagtatggtatggtgctgacactgaggtgacattgctttgctttttagGAGCAAAAGATGATTGTAACTGGTGGCCTAGTCTGGTGGGATGATTTTATGGTTCTTGCATGTTACAATTTAAGTGATCGTCAAGAAGAAgtgagtgtgtttctaaggttccggaatgaatagtcaccaactattaaatc Alignment from GeneWise GAGCAAAATATGATTGTGACTGGTGGCTTAGCCTGGTGGGATGACTTTATGGTCCTTGCGTGTTACAACTTAAGTGACCGTCAAGAAGAG aaaagtatggtatggtgctgacactgaggtgacattgctttgctttttagGAGCAAAAGATGATTGTAACTGGTGGCCTAGTCTGGTGGGATGATTTTATGGTTCTTGCATGTTACAATTTAAGTGATCGTCAAGAAGAAgtgagtgtgtttctaaggttccggaatgaatagtcaccaactattaaatc #### C030046E11Rik_ID6307_21 --> 0 - 2 Original Alignment GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAag caaagagctagcttctttgattgcacttttctgtcttttccctcccacagGAGCCAAGCTCCAGTGGTGGTTTTGAGTTTTTCCGGAACCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGCAAATTCGGATTACAAAAAACATTAAGTATACCAACTGGTCCCTCTGGGAAAcggtaagtagccagattttaaggagtaatgtaaaatatttattgtgtggaag Alignment from CESAR GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAag caaagagctagcttctttgattgcacttttctgtcttttccctcccacagGAGCCAAGCTCCAGTGGTGGTTTTGAGTTTTTCCGGAACCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGCAAATTCGGATTACAAAAAACATTAAGTATACCAACTGGTCCCTCTGGGAAAcggtaagtagccagattttaaggagtaatgtaaaatatttattgtgtggaag Alignment from Spaln_aa2Genome GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG caaagagctagcttctttgattgcacttttctgtcttttccctcccacagGAGCCAAGCTCCAGTGGTGGTTTTGAGTTTTTCCGGAACCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGCAAATTCGGATTACAAAAAACATTAAGTATACCAACTGGTCCCTCTGGGAAACGgtaagtagccagattttaaggagtaatgtaaaatatttattgtgtggaag Alignment from Spaln_nt2Genome GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG caaagagctagcttctttgattgcacttttctgtcttttccctcccacagGAGCCAAGCTCCAGTGGTGGTTTTGAGTTTTTCCGGAACCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGCAAATTCGGATTACAAAAAACATTAAGTATACCAACTGGTCCCTCTGGGAAACGgtaagtagccagattttaaggagtaatgtaaaatatttattgtgtggaag Alignment from Pairagon GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG caaagagctagcttctttgattgcacttttctgtcttttccctcccacagGAGCCAAGCTCCAGTGGTGGTTTTGAGTTTTTCCGGAACCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGCAAATTCGGATTACAAAAAACATTAAGTATACCAACTGGTCCCTCTGGGAAACGgtaagtagccagattttaaggagtaatgtaaaatatttattgtgtggaag Alignment from Exonerate_protein2genome GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG caaagagctagcttctttgattgcacttttctgtcttttccctcccacagGAGCCAAGCTCCAGTGGTGGTTTTGAGTTTTTCCGGAACCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGCAAATTCGGATTACAAAAAACATTAAGTATACCAACTGGTCCCTCTGGGAAACGgtaagtagccagattttaaggagtaatgtaaaatatttattgtgtggaag Alignment from Exonerate_coding2genome GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG caaagagctagcttctttgattgcacttttctgtcttttccctcccacagGAGCCAAGCTCCAGTGGTGGTTTTGAGTTTTTCCGGAACCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGCAAATTCGGATTACAAAAAACATTAAGTATACCAACTGGTCCCTCTGGGAAACGgtaagtagccagattttaaggagtaatgtaaaatatttattgtgtggaag Alignment from GeneWise GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG caaagagctagcttctttgattgcacttttctgtcttttccctcccacagGAGCCAAGCTCCAGTGGTGGTTTTGAGTTTTTCCGGAACCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGCAAATTCGGATTACAAAAAACATTAAGTATACCAACTGGTCCCTCTGGGAAACGgtaagtagccagattttaaggagtaatgtaaaatatttattgtgtggaag #### Cacul1_ID13274_8 --> 1 - 1 Original Alignment aGGTGATCAGTCCCGGAAGAGAGCTGGAGATGAGTTGGCTTATa aaacaagggtgctgcatggtttcaagtattttctctttcccacctttcaggCGA---CATTCCCGAAGAAGGGCTGGAGATGAGTTAGCATATagtaagtgacactaccttagtaggtttgtgaaataactcagcctctgaaga Alignment from CESAR aGGTGATCAGTCCCGGAAGAGAGCTGGAGATGAGTTGGCTTATa aaacaagggtgctgcatggtttcaagtattttctctttcccacctttcaggCGA---CATTCCCGAAGAAGGGCTGGAGATGAGTTAGCATATagtaagtgacactaccttagtaggtttgtgaaataactcagcctctgaaga Alignment from Spaln_aa2Genome AGGTGATCAGTCCCGGAAGAGAGCTGGAGATGAGTTGGCTTATA aaacaagggtgctgcatggtttcaagtattttctctttcccacctttcagGCGA---CATTCCCGAAGAAGGGCTGGAGATGAGTTAGCATATAgtaagtgacactaccttagtaggtttgtgaaataactcagcctctgaaga Alignment from Spaln_nt2Genome GTGATCAGTCCCGGAAGAGAGCTGGAGATGAGTTGGCTTATA aaacaagggtgctgcatggtttcaagtattttctctttcccacctttcagGCGA-CATTCCCGAAGAAGGGCTGGAGATGAGTTAGCATATAgtaagtgacactaccttagtaggtttgtgaaataactcagcctctgaaga Alignment from Pairagon AGGTGATCAGTCCCGGAAGAGAGCTGGAGATGAGTTGGCTTATA aaacaagggtgctgcatggtttcaagtattttctctttcccacctttcaggcgacattcccgaagA------------------AGGGCTGGAGATGAGTTAGCATATAgtaagtgacactaccttagtaggtttgtgaaataactcagcctctgaaga Alignment from Exonerate_protein2genome AGGTGATCAGTCCCGGAAGAGAGCTGGAGATGAGTTGGCTTATA aaacaagggtgctgcatggtttcaagtattttctctttcccacctttcagG---CGACATTCCCGAAGAAGGGCTGGAGATGAGTTAGCATATAgtaagtgacactaccttagtaggtttgtgaaataactcagcctctgaaga Alignment from Exonerate_coding2genome AGGTGATCAGTCCCGGAAGAGAGCTGGAGATGAGTTGGCTTATAAC aaacaagggtgctgcatggtttcaagtattttctctttcccacctttcagG---CGACATTCCCGAAGAAGGGCTGGAGATGAGTTAGCATATAGTaagtgacactaccttagtaggtttgtgaaataactcagcctctgaaga Alignment from GeneWise aaacaagggtgctgcatggtttcaagtattttctctttcccacctttcaggcgacattcccgaagaagggctggagatgagttagcatatagtaagtgacactaccttagtaggtttgtgaaataactcagcctctgaaga #### Cacul1_ID13277_5 --> 0 - 1 Original Alignment AATAAGTTTTACATAGAAACTAAGCTTAACAGAGACTTAAAAGATGACCTTATAAAACTGTTTACGGAACATGTTGCAGAGAAGCACATTTACAGCCTAATGc tttcctatgccttcatatcagacaataactccccacccccacccccgcagAACAAGTTTTACATAGAAACTAAGCTTAACAGAGACTTAAAAGATGATCTTATAAAACTGTTTACTGAACATGTTGCAGAGAAGCATATTTACAGCCTAATGcgtaagcatgtctctatttccttgggggtaggtggaccggagtcacttagc Alignment from CESAR AATAAGTTTTACATAGAAACTAAGCTTAACAGAGACTTAAAAGATGACCTTATAAAACTGTTTACGGAACATGTTGCAGAGAAGCACATTTACAGCCTAATGc tttcctatgccttcatatcagacaataactccccacccccacccccgcagAACAAGTTTTACATAGAAACTAAGCTTAACAGAGACTTAAAAGATGATCTTATAAAACTGTTTACTGAACATGTTGCAGAGAAGCATATTTACAGCCTAATGcgtaagcatgtctctatttccttgggggtaggtggaccggagtcacttagc Alignment from Spaln_aa2Genome AATAAGTTTTACATAGAAACTAAGCTTAACAGAGACTTAAAAGATGACCTTATAAAACTGTTTACGGAACATGTTGCAGAGAAGCACATTTACAGCCTAATGC tttcctatgccttcatatcagacaataactccccacccccacccccgcagAACAAGTTTTACATAGAAACTAAGCTTAACAGAGACTTAAAAGATGATCTTATAAAACTGTTTACTGAACATGTTGCAGAGAAGCATATTTACAGCCTAATGCgtaagcatgtctctatttccttgggggtaggtggaccggagtcacttagc Alignment from Spaln_nt2Genome AATAAGTTTTACATAGAAACTAAGCTTAACAGAGACTTAAAAGATGACCTTATAAAACTGTTTACGGAACATGTTGCAGAGAAGCACATTTACAGCCTAATGC tttcctatgccttcatatcagacaataactccccacccccacccccgcagAACAAGTTTTACATAGAAACTAAGCTTAACAGAGACTTAAAAGATGATCTTATAAAACTGTTTACTGAACATGTTGCAGAGAAGCATATTTACAGCCTAATGCgtaagcatgtctctatttccttgggggtaggtggaccggagtcacttagc Alignment from Pairagon AATAAGTTTTACATAGAAACTAAGCTTAACAGAGACTTAAAAGATGACCTTATAAAACTGTTTACGGAACATGTTGCAGAGAAGCACATTTACAGCCTAATGC tttcctatgccttcatatcagacaataactccccacccccacccccgcagAACAAGTTTTACATAGAAACTAAGCTTAACAGAGACTTAAAAGATGATCTTATAAAACTGTTTACTGAACATGTTGCAGAGAAGCATATTTACAGCCTAATGCgtaagcatgtctctatttccttgggggtaggtggaccggagtcacttagc Alignment from Exonerate_protein2genome AATAAGTTTTACATAGAAACTAAGCTTAACAGAGACTTAAAAGATGACCTTATAAAACTGTTTACGGAACATGTTGCAGAGAAGCACATTTACAGCCTAATGC tttcctatgccttcatatcagacaataactccccacccccacccccgcagAACAAGTTTTACATAGAAACTAAGCTTAACAGAGACTTAAAAGATGATCTTATAAAACTGTTTACTGAACATGTTGCAGAGAAGCATATTTACAGCCTAATGCgtaagcatgtctctatttccttgggggtaggtggaccggagtcacttagc Alignment from Exonerate_coding2genome AATAAGTTTTACATAGAAACTAAGCTTAACAGAGACTTAAAAGATGACCTTATAAAACTGTTTACGGAACATGTTGCAGAGAAGCACATTTACAGCCTAATGC tttcctatgccttcatatcagacaataactccccacccccacccccgcagAACAAGTTTTACATAGAAACTAAGCTTAACAGAGACTTAAAAGATGATCTTATAAAACTGTTTACTGAACATGTTGCAGAGAAGCATATTTACAGCCTAATGCgtaagcatgtctctatttccttgggggtaggtggaccggagtcacttagc Alignment from GeneWise AATAAGTTTTACATAGAAACTAAGCTTAACAGAGACTTAAAAGATGACCTTATAAAACTGTTTACGGAACATGTTGCAGAGAAGCACATTTACAGCCTAATGC tttcctatgccttcatatcagacaataactccccacccccacccccgcagAACAAGTTTTACATAGAAACTAAGCTTAACAGAGACTTAAAAGATGATCTTATAAAACTGTTTACTGAACATGTTGCAGAGAAGCATATTTACAGCCTAATGCgtaagcatgtctctatttccttgggggtaggtggaccggagtcacttagc #### Cacul1_ID13278_4 --> 0 - 0 Original Alignment GCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCTCTGGGACAGTATATGGGAGCATTGCAGAGCATCGTGCCTCTTTTCATATATATG ctgatatatcattggtggtaatgaaggtactgtgcttggcctcctgacagGCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCCCTGGGACAGTATATGGGAGCTTTGCAAAGCGTCGTTCCTCTTTCCATATATATGgtgagaataaatctccatagtcttttcttttcttcttaaaggatgtaggg Alignment from CESAR GCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCTCTGGGACAGTATATGGGAGCATTGCAGAGCATCGTGCCTCTTTTCATATATATG ctgatatatcattggtggtaatgaaggtactgtgcttggcctcctgacagGCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCCCTGGGACAGTATATGGGAGCTTTGCAAAGCGTCGTTCCTCTTTCCATATATATGgtgagaataaatctccatagtcttttcttttcttcttaaaggatgtaggg Alignment from Spaln_aa2Genome GCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCTCTGGGACAGTATATGGGAGCATTGCAGAGCATCGTGCCTCTTTTCATATATATG ctgatatatcattggtggtaatgaaggtactgtgcttggcctcctgacagGCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCCCTGGGACAGTATATGGGAGCTTTGCAAAGCGTCGTTCCTCTTTCCATATATATGgtgagaataaatctccatagtcttttcttttcttcttaaaggatgtaggg Alignment from Spaln_nt2Genome GCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCTCTGGGACAGTATATGGGAGCATTGCAGAGCATCGTGCCTCTTTTCATATATATG ctgatatatcattggtggtaatgaaggtactgtgcttggcctcctgacagGCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCCCTGGGACAGTATATGGGAGCTTTGCAAAGCGTCGTTCCTCTTTCCATATATATGgtgagaataaatctccatagtcttttcttttcttcttaaaggatgtaggg Alignment from Pairagon GCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCTCTGGGACAGTATATGGGAGCATTGCAGAGCATCGTGCCTCTTTTCATATATATG ctgatatatcattggtggtaatgaaggtactgtgcttggcctcctgacagGCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCCCTGGGACAGTATATGGGAGCTTTGCAAAGCGTCGTTCCTCTTTCCATATATATGgtgagaataaatctccatagtcttttcttttcttcttaaaggatgtaggg Alignment from Exonerate_protein2genome GCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCTCTGGGACAGTATATGGGAGCATTGCAGAGCATCGTGCCTCTTTTCATATATATG ctgatatatcattggtggtaatgaaggtactgtgcttggcctcctgacagGCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCCCTGGGACAGTATATGGGAGCTTTGCAAAGCGTCGTTCCTCTTTCCATATATATGgtgagaataaatctccatagtcttttcttttcttcttaaaggatgtaggg Alignment from Exonerate_coding2genome GCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCTCTGGGACAGTATATGGGAGCATTGCAGAGCATCGTGCCTCTTTTCATATATATG ctgatatatcattggtggtaatgaaggtactgtgcttggcctcctgacagGCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCCCTGGGACAGTATATGGGAGCTTTGCAAAGCGTCGTTCCTCTTTCCATATATATGgtgagaataaatctccatagtcttttcttttcttcttaaaggatgtaggg Alignment from GeneWise GCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCTCTGGGACAGTATATGGGAGCATTGCAGAGCATCGTGCCTCTTTTCATATATATG ctgatatatcattggtggtaatgaaggtactgtgcttggcctcctgacagGCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCCCTGGGACAGTATATGGGAGCTTTGCAAAGCGTCGTTCCTCTTTCCATATATATGgtgagaataaatctccatagtcttttcttttcttcttaaaggatgtaggg #### Cacul1_ID13281_2 --> 2 - 2 Original Alignment taATGAATGTTATAACAATTGAAGATTATAAGAGCACATACTGGCCAAAATTAGATGGTGCCATAGATCAACTTTTAACCCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACag ccagttggatgcaaccagttataatccagattatatttgttttattatagtaATAAATGTTATAACAATTGAGGATTATAAGAGCACATACTGGCCTAAATTAGATGGTGCCATAGATCAACTTTTAACTCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACaggtgagctcccatttgacagtaatgttcccctcaagcatatacttttgcaa Alignment from CESAR taATGAATGTTATAACAATTGAAGATTATAAGAGCACATACTGGCCAAAATTAGATGGTGCCATAGATCAACTTTTAACCCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACag ccagttggatgcaaccagttataatccagattatatttgttttattatagtaATAAATGTTATAACAATTGAGGATTATAAGAGCACATACTGGCCTAAATTAGATGGTGCCATAGATCAACTTTTAACTCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACaggtgagctcccatttgacagtaatgttcccctcaagcatatacttttgcaa Alignment from Spaln_aa2Genome TAATGAATGTTATAACAATTGAAGATTATAAGAGCACATACTGGCCAAAATTAGATGGTGCCATAGATCAACTTTTAACCCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACAG ccagttggatgcaaccagttataatccagattatatttgttttattatagTAATAAATGTTATAACAATTGAGGATTATAAGAGCACATACTGGCCTAAATTAGATGGTGCCATAGATCAACTTTTAACTCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACAGgtgagctcccatttgacagtaatgttcccctcaagcatatacttttgcaa Alignment from Spaln_nt2Genome TAATGAATGTTATAACAATTGAAGATTATAAGAGCACATACTGGCCAAAATTAGATGGTGCCATAGATCAACTTTTAACCCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACAG ccagttggatgcaaccagttataatccagattatatttgttttattatagTAATAAATGTTATAACAATTGAGGATTATAAGAGCACATACTGGCCTAAATTAGATGGTGCCATAGATCAACTTTTAACTCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACAGgtgagctcccatttgacagtaatgttcccctcaagcatatacttttgcaa Alignment from Pairagon TAATGAATGTTATAACAATTGAAGATTATAAGAGCACATACTGGCCAAAATTAGATGGTGCCATAGATCAACTTTTAACCCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACAG ccagttggatgcaaccagttataatccagattatatttgttttattatagTAATAAATGTTATAACAATTGAGGATTATAAGAGCACATACTGGCCTAAATTAGATGGTGCCATAGATCAACTTTTAACTCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACAGgtgagctcccatttgacagtaatgttcccctcaagcatatacttttgcaa Alignment from Exonerate_protein2genome TAATGAATGTTATAACAATTGAAGATTATAAGAGCACATACTGGCCAAAATTAGATGGTGCCATAGATCAACTTTTAACCCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACAG ccagttggatgcaaccagttataatccagattatatttgttttattatagTAATAAATGTTATAACAATTGAGGATTATAAGAGCACATACTGGCCTAAATTAGATGGTGCCATAGATCAACTTTTAACTCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACAGgtgagctcccatttgacagtaatgttcccctcaagcatatacttttgcaa Alignment from Exonerate_coding2genome TAATGAATGTTATAACAATTGAAGATTATAAGAGCACATACTGGCCAAAATTAGATGGTGCCATAGATCAACTTTTAACCCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACAG ccagttggatgcaaccagttataatccagattatatttgttttattatagTAATAAATGTTATAACAATTGAGGATTATAAGAGCACATACTGGCCTAAATTAGATGGTGCCATAGATCAACTTTTAACTCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACAGgtgagctcccatttgacagtaatgttcccctcaagcatatacttttgcaa Alignment from GeneWise TAATGAATGTTATAACAATTGAAGATTATAAGAGCACATACTGGCCAAAATTAGATGGTGCCATAGATCAACTTTTAACCCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACAG ccagttggatgcaaccagttataatccagattatatttgttttattatagTAATAAATGTTATAACAATTGAGGATTATAAGAGCACATACTGGCCTAAATTAGATGGTGCCATAGATCAACTTTTAACTCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACAGgtgagctcccatttgacagtaatgttcccctcaagcatatacttttgcaa #### Capn1_ID1361_15 --> 0 - 1 Original Alignment GACATGGAGATCAGCGTCAAGGAGCTACAGACCATCTTGAACAGGATCATTAGCAAAc gagaactgcaacaagtacaagtactgcttattgttggggtttccttgcagGACATGGAAATCAGTGTTAAGGAATTACAGACCATCTTGAATAGGATTATTAGCAGGcgtgagtcagccacaccatgtccaagccctggctcttcaccaaacccactc Alignment from CESAR GACATGGAGATCAGCGTCAAGGAGCTACAGACCATCTTGAACAGGATCATTAGCAAAc gagaactgcaacaagtacaagtactgcttattgttggggtttccttgcagGACATGGAAATCAGTGTTAAGGAATTACAGACCATCTTGAATAGGATTATTAGCAGGcgtgagtcagccacaccatgtccaagccctggctcttcaccaaacccactc Alignment from Spaln_aa2Genome GACATGGAGATCAGCGTCAAGGAGCTACAGACCATCTTGAACAGGATCATTAGCAAAC gagaactgcaacaagtacaagtactgcttattgttggggtttccttgcagGACATGGAAATCAGTGTTAAGGAATTACAGACCATCTTGAATAGGATTATTAGCAGGCgtgagtcagccacaccatgtccaagccctggctcttcaccaaacccactc Alignment from Spaln_nt2Genome GACATGGAGATCAGCGTCAAGGAGCTACAGACCATCTTGAACAGGATCATTAGCAAAC gagaactgcaacaagtacaagtactgcttattgttggggtttccttgcagGACATGGAAATCAGTGTTAAGGAATTACAGACCATCTTGAATAGGATTATTAGCAGGCgtgagtcagccacaccatgtccaagccctggctcttcaccaaacccactc Alignment from Pairagon GACATGGAGATCAGCGTCAAGGAGCTACAGACCATCTTGAACAGGATCATTAGCAAAC gagaactgcaacaagtacaagtactgcttattgttggggtttccttgcagGACATGGAAATCAGTGTTAAGGAATTACAGACCATCTTGAATAGGATTATTAGCAGGCgtgagtcagccacaccatgtccaagccctggctcttcaccaaacccactc Alignment from Exonerate_protein2genome GACATGGAGATCAGCGTCAAGGAGCTACAGACCATCTTGAACAGGATCATTAGCAAAC gagaactgcaacaagtacaagtactgcttattgttggggtttccttgcagGACATGGAAATCAGTGTTAAGGAATTACAGACCATCTTGAATAGGATTATTAGCAGGCgtgagtcagccacaccatgtccaagccctggctcttcaccaaacccactc Alignment from Exonerate_coding2genome GACATGGAGATCAGCGTCAAGGAGCTACAGACCATCTTGAACAGGATCATTAGCAAAC gagaactgcaacaagtacaagtactgcttattgttggggtttccttgcagGACATGGAAATCAGTGTTAAGGAATTACAGACCATCTTGAATAGGATTATTAGCAGGCgtgagtcagccacaccatgtccaagccctggctcttcaccaaacccactc Alignment from GeneWise GACATGGAGATCAGCGTCAAGGAGCTACAGACCATCTTGAACAGGATCATTAGCAAAC gagaactgcaacaagtacaagtactgcttattgttggggtttccttgcagGACATGGAAATCAGTGTTAAGGAATTACAGACCATCTTGAATAGGATTATTAGCAGGCgtgagtcagccacaccatgtccaagccctggctcttcaccaaacccactc #### Capn1_ID1366_10 --> 2 - 0 Original Alignment ctACCTTCTGGGTAAACCCCCAGTTCAAGATCCGGTTGGAGGAGGTGGATGACGCAGACGACTATGACAACCGGGAGTCGGGCTGCAGCTTCTTGCTGGCCCTCATGCAGAAACACCGCCGCAGGGAGCGTCGCTTTGGCCGGGACATGGAGACCATCGGTTTTGCAGTGTACCAG ccatcagtctggctttttagaaggcttttctaattgtttcctgatttcagcaACTTTCTGGGTAAATCCTCATTTTAAAATCAGGCTGGAA------GATGATGCTGATGATTATGATAATCGGGAGTCAGGATGTAGCATTTTGCTGGCTATCATGCAGAACCACCGACGCCGGGAGCATCGCTTTGGCCAGGACATG---ATTATCAGCTTTGCAGTGTATCAAgtaagtcagacaagggatgcccacccgttattggagtccactagagatag Alignment from CESAR ctACCTTCTGGGTAAACCCCCAGTTCAAGATCCGGTTGGAGGAGGTGGATGACGCAGACGACTATGACAACCGGGAGTCGGGCTGCAGCTTCTTGCTGGCCCTCATGCAGAAACACCGCCGCAGGGAGCGTCGCTTTGGCCGGGACATGGAGACCATCGGTTTTGCAGTGTACCAG ccatcagtctggctttttagaaggcttttctaattgtttcctgatttcagcaACTTTCTGGGTAAATCCTCATTTTAAAATCAGGCTGGAA------GATGATGCTGATGATTATGATAATCGGGAGTCAGGATGTAGCATTTTGCTGGCTATCATGCAGAACCACCGACGCCGGGAGCATCGCTTTGGCCAGGACATG---ATTATCAGCTTTGCAGTGTATCAAgtaagtcagacaagggatgcccacccgttattggagtccactagagatag Alignment from Spaln_aa2Genome CTACCTTCTGGGTAAACCCCCAGTTCAAGATCCGGTTGGAGGAGGTGGATGACGCAGACGACTATGACAACCGGGAGTCGGGCTGCAGCTTCTTGCTGGCCCTCATGCAGAAACACCGCCGCAGGGAGCGTCGCTTTGGCCGGGACATGGAGACCATCGGTTTTGCAGTGTACCAG ccatcagtctggctttttagaaggcttttctaattgtttcctgatttcagCAACTTTCTGGGTAAATCCTCATTTTAAAATCAGGCTGGAA------GATGATGCTGATGATTATGATAATCGGGAGTCAGGATGTAGCATTTTGCTGGCTATCATGCAGAACCACCGACGCCGGGAGCATCGCTTTGGCCAGGACATG---ATTATCAGCTTTGCAGTGTATCAAgtaagtcagacaagggatgcccacccgttattggagtccactagagatag Alignment from Spaln_nt2Genome CTACCTTCTGGGTAAACCCCCAGTTCAAGATCCGGTTGGAGGAGGTGGATGACGCAGACGACTATGACAACCGGGAGTCGGGCTGCAGCTTCTTGCTGGCCCTCATGCAGAAACACCGCCGCAGGGAGCGTCGCTTTGGCCGGGACATGGAGACCATCGGTTTTGCAGTGTACCAG ccatcagtctggctttttagaaggcttttctaattgtttcctgatttcagCAACTTTCTGGGTAAATCCTCATTTTAAAATCAGGCTGGA------AGATGATGCTGATGATTATGATAATCGGGAGTCAGGATGTAGCATTTTGCTGGCTATCATGCAGAACCACCGACGCCGGGAGCATCGCTTTGGCCAGGACAT---GATTATCAGCTTTGCAGTGTATCAAgtaagtcagacaagggatgcccacccgttattggagtccactagagatag Alignment from Pairagon CTACCTTCTGGGTAAACCCCCAGTTCAAGATCCGGTTGGAGGAGGTGGATGACGCAGACGACTATGACAACCGGGAGTCGGGCTGCAGCTTCTTGCTGGCCCTCATGCAGAAACACCGCCGCAGGGAGCGTCGCTTTGGCCGGGACATGGAGACCATCGGTTTTGCAGTGTACCAG ccatcagtctggctttttagaaggcttttctaattgtttcctgatttcagCAACTTTCTGGGTAAATCCTCATTTTAAAATCAGGCTGGA------AGATGATGCTGATGATTATGATAATCGGGAGTCAGGATGTAGCATTTTGCTGGCTATCATGCAGAACCACCGACGCCGGGAGCATCGCTTTGGCCAGGACAT---GATTATCAGCTTTGCAGTGTATCAAgtaagtcagacaagggatgcccacccgttattggagtccactagagatag Alignment from Exonerate_protein2genome CTACCTTCTGGGTAAACCCCCAGTTCAAGATCCGGTTGGAGGAGGTGGATGACGCAGACGACTATGACAACCGGGAGTCGGGCTGCAGCTTCTTGCTGGCCCTCATGCAGAAACACCGCCGCAGGGAGCGTCGCTTTGGCCGGGACATGGAGACCATCGGTTTTGCAGTGTACCAGGTCCCTCGG ccatcagtctggctttttagaaggcttttctaattgtttcctgatttcagCAACTTTCTGGGTAAATCCTCATTTTAAAATCAGGCTGGAA------GATGATGCTGATGATTATGATAATCGGGAGTCAGGATGTAGCATTTTGCTGGCTATCATGCAGAACCACCGACGCCGGGAGCATCGCTTTGGCCAGGACATG---ATTATCAGCTTTGCAGTGTATCAAGTAAGTCAGacaagggatgcccacccgttattggagtccactagagatag Alignment from Exonerate_coding2genome CTACCTTCTGGGTAAACCCCCAGTTCAAGATCCGGTTGGAGGAGGTGGATGACGCAGACGACTATGACAACCGGGAGTCGGGCTGCAGCTTCTTGCTGGCCCTCATGCAGAAACACCGCCGCAGGGAGCGTCGCTTTGGCCGGGACATGGAGACCATCGGTTTTGCAGTGTACCAGGTCCCTCGG ccatcagtctggctttttagaaggcttttctaattgtttcctgatttcagCAACTTTCTGGGTAAATCCTCATTTTAAAATCAGGCTGGAA------GATGATGCTGATGATTATGATAATCGGGAGTCAGGATGTAGCATTTTGCTGGCTATCATGCAGAACCACCGACGCCGGGAGCATCGCTTTGGCCAGGACATG---ATTATCAGCTTTGCAGTGTATCAAGTAAGTCAGacaagggatgcccacccgttattggagtccactagagatag Alignment from GeneWise CTACCTTCTGGGTAAACCCCCAGTTCAAGATCCGGTTGGAGGAGGTGGATGACGCAGACGACTATGACAACCGGGAGTCGGGCTGCAGCTTCTTGCTGGCCCTCATGCAGAAACACCGCCGCAGGGAGCGTCGCTTTGGCCGGGACATGGAGACCATCGGTTTTGCAGTGTACCAG ccatcagtctggctttttagaaggcttttctaattgtttcctgatttcagCAACTTTCTGGGTAAATCCTCATTTTAAAATCAGGCTGGAA------GATGATGCTGATGATTATGATAATCGGGAGTCAGGATGTAGCATTTTGCTGGCTATCATGCAGAACCACCGACGCCGGGAGCATCGCTTTGGCCAGGACATG---ATTATCAGCTTTGCAGTGTATCAAgtaagtcagacaagggatgcccacccgttattggagtccactagagatag #### Capn1_ID1368_8 --> 1 - 2 Original Alignment cTCCTATGAGTGGAACAAAGTGGACCCCTATGAACGAGAGCAGCTGAGGGTCAAGATGGAGGATGGGGAGTTCtg agaattgcatatgtggctttgcttgtgtcccggtgcgcccttctctacagcCCGTATGAGTGGAACAAAGTAGATCCTTATGAACAAGAGCAACCAAGAGTCAAGATGGAAGATGGAGAATTTtggtaaagaattagatatccttccctggcacacccctctgtggaagactgtc Alignment from CESAR cTCCTATGAGTGGAACAAAGTGGACCCCTATGAACGAGAGCAGCTGAGGGTCAAGATGGAGGATGGGGAGTTCtg agaattgcatatgtggctttgcttgtgtcccggtgcgcccttctctacagcCCGTATGAGTGGAACAAAGTAGATCCTTATGAACAAGAGCAACCAAGAGTCAAGATGGAAGATGGAGAATTTtggtaaagaattagatatccttccctggcacacccctctgtggaagttttta Alignment from Spaln_aa2Genome CTCCTATGAGTGGAACAAAGTGGACCCCTATGAACGAGAGCAGCTGAGGGTCAAGATGGAGGATGGGGAGTTCTG agaattgcatatgtggctttgcttgtgtcccggtgcgcccttctctacagCCCGTATGAGTGGAACAAAGTAGATCCTTATGAACAAGAGCAACCAAGAGTCAAGATGGAAGATGGAGAATTTTGgtaaagaattagatatccttccctggcacacccctctgtggaagactgtc Alignment from Spaln_nt2Genome CTCCTATGAGTGGAACAAAGTGGACCCCTATGAACGAGAGCAGCTGAGGGTCAAGATGGAGGATGGGGAGTTCTG agaattgcatatgtggctttgcttgtgtcccggtgcgcccttctctacagCCCGTATGAGTGGAACAAAGTAGATCCTTATGAACAAGAGCAACCAAGAGTCAAGATGGAAGATGGAGAATTTTGgtaaagaattagatatccttccctggcacacccctctgtggaagactgtc Alignment from Pairagon CTCCTATGAGTGGAACAAAGTGGACCCCTATGAACGAGAGCAGCTGAGGGTCAAGATGGAGGATGGGGAGTTCTG agaattgcatatgtggctttgcttgtgtcccggtgcgcccttctctacagCCCGTATGAGTGGAACAAAGTAGATCCTTATGAACAAGAGCAACCAAGAGTCAAGATGGAAGATGGAGAATTTTGgtaaagaattagatatccttccctggcacacccctctgtggaagactgtc Alignment from Exonerate_protein2genome CTCCTATGAGTGGAACAAAGTGGACCCCTATGAACGAGAGCAGCTGAGGGTCAAGATGGAGGATGGGGAGTTCTG agaattgcatatgtggctttgcttgtgtcccggtgcgcccttctctacagCCCGTATGAGTGGAACAAAGTAGATCCTTATGAACAAGAGCAACCAAGAGTCAAGATGGAAGATGGAGAATTTTGgtaaagaattagatatccttccctggcacacccctctgtggaagactgtc Alignment from Exonerate_coding2genome AGCTCCTATGAGTGGAACAAAGTGGACCCCTATGAACGAGAGCAGCTGAGGGTCAAGATGGAGGATGGGGAGTTCTG agaattgcatatgtggctttgcttgtgtcccggtgcgcccttctctacAGCCCGTATGAGTGGAACAAAGTAGATCCTTATGAACAAGAGCAACCAAGAGTCAAGATGGAAGATGGAGAATTTTGgtaaagaattagatatccttccctggcacacccctctgtggaagactgtc Alignment from GeneWise CTCCTATGAGTGGAACAAAGTGGACCCCTATGAACGAGAGCAGCTGAGGGTCAAGATGGAGGATGGGGAGTTCTG agaattgcatatgtggctttgcttgtgtcccggtgcgcccttctctacagCCCGTATGAGTGGAACAAAGTAGATCCTTATGAACAAGAGCAACCAAGAGTCAAGATGGAAGATGGAGAATTTTGgtaaagaattagatatccttccctggcacacccctctgtggaagactgtc #### Capn1_ID1369_7 --> 0 - 2 Original Alignment GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACag ggggagtgtgttctgtctctgatgcaacatgctcttcttgactatcacagGTAACCTATCAGGGCCCACGAGTGAACCTTATTCGTATGTGGAATTCCTGGGGTCCAGTAGAGTGGAGAGGTCCTTGGAGTGACaggtaagtgaatgcaagcagtttcgtggaaatggttttatgatcagactcct Alignment from CESAR GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACag ggggagtgtgttctgtctctgatgcaacatgctcttcttgactatcacagGTAACCTATCAGGGCCCACGAGTGAACCTTATTCGTATGTGGAATTCCTGGGGTCCAGTAGAGTGGAGAGGTCCTTGGAGTGACaggtaagtgaatgcaagcagtttcgtggaaatggttttatgatcagactcct Alignment from Spaln_aa2Genome GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAG ggggagtgtgttctgtctctgatgcaacatgctcttcttgactatcacagGTAACCTATCAGGGCCCACGAGTGAACCTTATTCGTATGTGGAATTCCTGGGGTCCAGTAGAGTGGAGAGGTCCTTGGAGTGACAGgtaagtgaatgcaagcagtttcgtggaaatggttttatgatcagactcct Alignment from Spaln_nt2Genome GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAG ggggagtgtgttctgtctctgatgcaacatgctcttcttgactatcacagGTAACCTATCAGGGCCCACGAGTGAACCTTATTCGTATGTGGAATTCCTGGGGTCCAGTAGAGTGGAGAGGTCCTTGGAGTGACAGgtaagtgaatgcaagcagtttcgtggaaatggttttatgatcagactcct Alignment from Pairagon GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAG ggggagtgtgttctgtctctgatgcaacatgctcttcttgactatcacagGTAACCTATCAGGGCCCACGAGTGAACCTTATTCGTATGTGGAATTCCTGGGGTCCAGTAGAGTGGAGAGGTCCTTGGAGTGACAGgtaagtgaatgcaagcagtttcgtggaaatggttttatgatcagactcct Alignment from Exonerate_protein2genome GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAG ggggagtgtgttctgtctctgatgcaacatgctcttcttgactatcacagGTAACCTATCAGGGCCCACGAGTGAACCTTATTCGTATGTGGAATTCCTGGGGTCCAGTAGAGTGGAGAGGTCCTTGGAGTGACAGgtaagtgaatgcaagcagtttcgtggaaatggttttatgatcagactcct Alignment from Exonerate_coding2genome ggggagtgtgttctgtctctgatgcaacatgctcttcttgactatcacaggtaacctatcagggcccacgagtgaaccttattcgtatgtggaattcctggggtccagtagagtggagaggtccttggagtgacaggtaagtgaatgcaagcagtttcgtggaaatggttttatgatcagactcct Alignment from GeneWise GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGGACCCTGGAGTGACAG ggggagtgtgttctgtctctgatgcaacatgctcttcttgactatcacagGTAACCTATCAGGGCCCACGAGTGAACCTTATTCGTATGTGGAATTCCTGGGGTCCAGTAGAGTGGAGAGGTCCTTGGAGTGACAGgtaagtgaatgcaagcagtttcgtggaaatggttttatgatcagactcct #### Capn1_ID1376_2 --> 0 - 1 Original Alignment GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGg ggcacatcaaggggggctggggcccatgatctagtgtatgttttctccagGAATTGATGTCAAACCCCCAATTCATTGTAGACGGAGCCACCCGAACAGACATCTGCCAGGGAGCACTAggtacgtaaacatctctaggcatgggctgctgtgtgacttgagctccgttt Alignment from CESAR GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGg ggcacatcaaggggggctggggcccatgatctagtgtatgttttctccagGAATTGATGTCAAACCCCCAATTCATTGTAGACGGAGCCACCCGAACAGACATCTGCCAGGGAGCACTAggtacgtaaacatctctaggcatgggctgctgtgtgacttgagctccgttt Alignment from Spaln_aa2Genome GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ggcacatcaaggggggctggggcccatgatctagtgtatgttttctccagGAATTGATGTCAAACCCCCAATTCATTGTAGACGGAGCCACCCGAACAGACATCTGCCAGGGAGCACTAGgtacgtaaacatctctaggcatgggctgctgtgtgacttgagctccgttt Alignment from Spaln_nt2Genome GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ggcacatcaaggggggctggggcccatgatctagtgtatgttttctccagGAATTGATGTCAAACCCCCAATTCATTGTAGACGGAGCCACCCGAACAGACATCTGCCAGGGAGCACTAGgtacgtaaacatctctaggcatgggctgctgtgtgacttgagctccgttt Alignment from Pairagon GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ggcacatcaaggggggctggggcccatgatctagtgtatgttttctccagGAATTGATGTCAAACCCCCAATTCATTGTAGACGGAGCCACCCGAACAGACATCTGCCAGGGAGCACTAGgtacgtaaacatctctaggcatgggctgctgtgtgacttgagctccgttt Alignment from Exonerate_protein2genome GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ggcacatcaaggggggctggggcccatgatctagtgtatgttttctccagGAATTGATGTCAAACCCCCAATTCATTGTAGACGGAGCCACCCGAACAGACATCTGCCAGGGAGCACTAGgtacgtaaacatctctaggcatgggctgctgtgtgacttgagctccgttt Alignment from Exonerate_coding2genome ggcacatcaaggggggctggggcccatgatctagtgtatgttttctccaggaattgatgtcaaacccccaattcattgtagacggagccacccgaacagacatctgccagggagcactaggtacgtaaacatctctaggcatgggctgctgtgtgacttgagctccgttt Alignment from GeneWise GAACTGATGTCAAACCCCCAGTTCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ggcacatcaaggggggctggggcccatgatctagtgtatgttttctccagGAATTGATGTCAAACCCCCAATTCATTGTAGACGGAGCCACCCGAACAGACATCTGCCAGGGAGCACTAGgtacgtaaacatctctaggcatgggctgctgtgtgacttgagctccgttt #### Carns1_ID385_7 --> 0 - 1 Original Alignment GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCg agatggctccttaccagccagcctccaggttttcttttattcaatgctagATAGTGTGTGGTGTGGGTTATGGGGACCGG---GTTCGACAACATTACACTGTTCCAAGAACACTGAGGGTGGCACTG---CAGTGTGGCCTGGAAGATGGTGCGCAGGTGGCACTTCTAGAACAGGGGTTCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTTGCAGCTGGGTTGCATGTGGAGCAGCATGGTGGC---CAAGTGCACACTGATTTCCTTggtaagtttgaatgaagggggccctgcgatgcctatgttttcgactgtagc Alignment from CESAR GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCg agatggctccttaccagccagcctccaggttttcttttattcaatgctagATAGTGTGTGGTGTGGGTTATGGGGACCGG---GTTCGACAACATTACACTGTTCCAAGAACACTGAGGGTGGCACTG---CAGTGTGGCCTGGAAGATGGTGCGCAGGTGGCACTTCTAGAACAGGGGTTCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTTGCAGCTGGGTTGCATGTGGAGCAGCATGGTGGC---CAAGTGCACACTGATTTCCTTggtaagtttgaatgaagggggccctgcgatgcctatgttttcgactgtagc Alignment from Spaln_aa2Genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG agatggctccttaccagccagcctccaggttttcttttattcaatgctagATAGTGTGTGGTGTGGGTTATGGGGACCGG---GTTCGACAACATTACACTGTTCCAAGAACACTGAGGGTGGCACTG---CAGTGTGGCCTGGAAGATGGTGCGCAGGTGGCACTTCTAGAACAGGGGTTCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTTGCAGCTGGGTTGCATGTGGAGCAGCATGGTGGC---CAAGTGCACACTGATTTCCTTGgtaagtttgaatgaagggggccctgcgatgcctatgttttcgactgtagc Alignment from Spaln_nt2Genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG agatggctccttaccagccagcctccaggttttcttttattcaatgctagATAGTGTGTGGTGTGGGTTATGGGGACCG---GGTTCGACAACATTACACTGTTCCAAGAACACTGAGGGTGGCACTG---CAGTGTGGCCTGGAAGATGGTGCGCAGGTGGCACTTCTAGAACAGGGGTTCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTTGCAGCTGGGTTGCATGTGGAGCAGCATGGTG---GCCAAGTGCACACTGATTTCCTTGgtaagtttgaatgaagggggccctgcgatgcctatgttttcgactgtagc Alignment from Pairagon GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG agatggctccttaccagccagcctccaggttttcttttattcaatgctagATAGTGTGTGGTGTGGGTTATGGGGACCG---GGTTCGACAACATTACACTGTTCCAAGAACACTGAGGGTGGCACTG---CAGTGTGGCCTGGAAGATGGTGCGCAGGTGGCACTTCTAGAACAGGGGTTCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTTGCAGCTGGGTTGCATGTGGAGCAGCATGGTG---GCCAAGTGCACACTGATTTCCTTGgtaagtttgaatgaagggggccctgcgatgcctatgttttcgactgtagc Alignment from Exonerate_protein2genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG agatggctccttaccagccagcctccaggttttcttttattcaatgctagATAGTGTGTGGTGTGGGTTATGGGGACCGG---GTTCGACAACATTACACTGTTCCAAGAACACTGAGGGTGGCACTG---CAGTGTGGCCTGGAAGATGGTGCGCAGGTGGCACTTCTAGAACAGGGGTTCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTTGCAGCTGGGTTGCATGTGGAGCAGCATGGTGGC---CAAGTGCACACTGATTTCCTTGgtaagtttgaatgaagggggccctgcgatgcctatgttttcgactgtagc Alignment from Exonerate_coding2genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG agatggctccttaccagccagcctccaggttttcttttattcaatgctagATAGTGTGTGGTGTGGGTTATGGGGACCGG---GTTCGACAACATTACACTGTTCCAAGAACACTGAGGGTGGCACTG---CAGTGTGGCCTGGAAGATGGTGCGCAGGTGGCACTTCTAGAACAGGGGTTCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTTGCAGCTGGGTTGCATGTGGAGCAGCATGGTGGC---CAAGTGCACACTGATTTCCTTGgtaagtttgaatgaagggggccctgcgatgcctatgttttcgactgtagc Alignment from GeneWise GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG agatggctccttaccagccagcctccaggttttcttttattcaatgctagATAGTGTGTGGTGTGGGTTATGGGGACCGG---GTTCGACAACATTACACTGTTCCAAGAACACTGAGGGTGGCACTG---CAGTGTGGCCTGGAAGATGGTGCGCAGGTGGCACTTCTAGAACAGGGGTTCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTTGCAGCTGGGTTGCATGTGGAGCAGCATGGTGGC---CAAGTGCACACTGATTTCCTTGgtaagtttgaatgaagggggccctgcgatgcctatgttttcgactgtagc #### Carns1_ID386_6 --> 2 - 0 Original Alignment gcGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG ctgccttaattagatgcattaagatttgcatggccacctttgggttctaggcAGTCCTGCACCCGGACCTGAGCTGGCTGTGCACATGTGTGCAGTAGTATGTCAGATCCAGGGAGATAGACCCCTCCTCAGCAAGgtaagaagtggatgccaccctgaccaacccctattcaggctagcttggtg Alignment from CESAR gcGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG ctgccttaattagatgcattaagatttgcatggccacctttgggttctaggcAGTCCTGCACCCGGACCTGAGCTGGCTGTGCACATGTGTGCAGTAGTATGTCAGATCCAGGGAGATAGACCCCTCCTCAGCAAGgtaagaagtggatgccaccctgaccaacccctattcaggctagcttggtg Alignment from Spaln_aa2Genome GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG ctgccttaattagatgcattaagatttgcatggccacctttgggttctagGCAGTCCTGCACCCGGACCTGAGCTGGCTGTGCACATGTGTGCAGTAGTATGTCAGATCCAGGGAGATAGACCCCTCCTCAGCAAGgtaagaagtggatgccaccctgaccaacccctattcaggctagcttggtg Alignment from Spaln_nt2Genome GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG ctgccttaattagatgcattaagatttgcatggccacctttgggttctagGCAGTCCTGCACCCGGACCTGAGCTGGCTGTGCACATGTGTGCAGTAGTATGTCAGATCCAGGGAGATAGACCCCTCCTCAGCAAGgtaagaagtggatgccaccctgaccaacccctattcaggctagcttggtg Alignment from Pairagon GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG ctgccttaattagatgcattaagatttgcatggccacctttgggttctagGCAGTCCTGCACCCGGACCTGAGCTGGCTGTGCACATGTGTGCAGTAGTATGTCAGATCCAGGGAGATAGACCCCTCCTCAGCAAGgtaagaagtggatgccaccctgaccaacccctattcaggctagcttggtg Alignment from Exonerate_protein2genome GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG ctgccttaattagatgcattaagatttgcatggccacctttgggttctagGCAGTCCTGCACCCGGACCTGAGCTGGCTGTGCACATGTGTGCAGTAGTATGTCAGATCCAGGGAGATAGACCCCTCCTCAGCAAGgtaagaagtggatgccaccctgaccaacccctattcaggctagcttggtg Alignment from Exonerate_coding2genome GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG ctgccttaattagatgcattaagatttgcatggccacctttgggttctagGCAGTCCTGCACCCGGACCTGAGCTGGCTGTGCACATGTGTGCAGTAGTATGTCAGATCCAGGGAGATAGACCCCTCCTCAGCAAGgtaagaagtggatgccaccctgaccaacccctattcaggctagcttggtg Alignment from GeneWise TCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG ctgccttaattagatgcattaagatttgcatggccacctttgggttctaggcagTCCTGCACCCGGACCTGAGCTGGCTGTGCACATGTGTGCAGTAGTATGTCAGATCCAGGGAGATAGACCCCTCCTCAGCAAGgtaagaagtggatgccaccctgaccaacccctattcaggctagcttggtg #### Casp7_ID12088_3 --> 2 - 1 Original Alignment gtATGGACGTCCGGAATGGGACGGACAAAGATGCAGGGGCCCTCTTCAAGTGCTTCCAAAACCTGGGTTTTGAAGTAACCGTCCACAATGACTGCTCTTGTGCAAAGATGCAAGATCTGCTTAGAAAAg aaacccggtttgactagtttaccccagtctgatgtcaccatcctttctaggtATGGGTGTCAGAACTGGGACAGGTAAAGATGCAGGGGCTCTGTTCAAGTGCTTCCAAAACCTGAGTCTGGAAGTGACTATTCACAATGACTGCCCTTGTGCAAAGATGCAGTCCTTACTTAGAAATtgtaacttgaaatttcaagagttgttggtgaaagtgtatttagtctgtgca Alignment from CESAR gtATGGACGTCCGGAATGGGACGGACAAAGATGCAGGGGCCCTCTTCAAGTGCTTCCAAAACCTGGGTTTTGAAGTAACCGTCCACAATGACTGCTCTTGTGCAAAGATGCAAGATCTGCTTAGAAAAg aaacccggtttgactagtttaccccagtctgatgtcaccatcctttctaggtATGGGTGTCAGAACTGGGACAGGTAAAGATGCAGGGGCTCTGTTCAAGTGCTTCCAAAACCTGAGTCTGGAAGTGACTATTCACAATGACTGCCCTTGTGCAAAGATGCAGTCCTTACTTAGAAATtgtaacttgaaatttcaagagttgttggtgaaagtgtatttagtctgtgca Alignment from Spaln_aa2Genome GTATGGACGTCCGGAATGGGACGGACAAAGATGCAGGGGCCCTCTTCAAGTGCTTCCAAAACCTGGGTTTTGAAGTAACCGTCCACAATGACTGCTCTTGTGCAAAGATGCAAGATCTGCTTAGAAAAG aaacccggtttgactagtttaccccagtctgatgtcaccatcctttctagGTATGGGTGTCAGAACTGGGACAGGTAAAGATGCAGGGGCTCTGTTCAAGTGCTTCCAAAACCTGAGTCTGGAAGTGACTATTCACAATGACTGCCCTTGTGCAAAGATGCAGTCCTTACTTAGAAATTgtaacttgaaatttcaagagttgttggtgaaagtgtatttagtctgtgca Alignment from Spaln_nt2Genome GTATGGACGTCCGGAATGGGACGGACAAAGATGCAGGGGCCCTCTTCAAGTGCTTCCAAAACCTGGGTTTTGAAGTAACCGTCCACAATGACTGCTCTTGTGCAAAGATGCAAGATCTGCTTAGAAAAG aaacccggtttgactagtttaccccagtctgatgtcaccatcctttctagGTATGGGTGTCAGAACTGGGACAGGTAAAGATGCAGGGGCTCTGTTCAAGTGCTTCCAAAACCTGAGTCTGGAAGTGACTATTCACAATGACTGCCCTTGTGCAAAGATGCAGTCCTTACTTAGAAATTgtaacttgaaatttcaagagttgttggtgaaagtgtatttagtctgtgca Alignment from Pairagon GTATGGACGTCCGGAATGGGACGGACAAAGATGCAGGGGCCCTCTTCAAGTGCTTCCAAAACCTGGGTTTTGAAGTAACCGTCCACAATGACTGCTCTTGTGCAAAGATGCA aaacccggtttgactagtttaccccagtctgatgtcaccatcctttctagGTATGGGTGTCAGAACTGGGACAGGTAAAGATGCAGGGGCTCTGTTCAAGTGCTTCCAAAACCTGAGTCTGGAAGTGACTATTCACAATGACTGCCCTTGTGCAAAGATGCAgtccttacttagaaattgtaacttgaaatttcaagagttgttggtgaaagtgtatttagtctgtgca Alignment from Exonerate_protein2genome GTATGGACGTCCGGAATGGGACGGACAAAGATGCAGGGGCCCTCTTCAAGTGCTTCCAAAACCTGGGTTTTGAAGTAACCGTCCACAATGACTGCTCTTGTGCAAAGATGCAAGATCTGCTTAGAAAAG aaacccggtttgactagtttaccccagtctgatgtcaccatcctttctagGTATGGGTGTCAGAACTGGGACAGGTAAAGATGCAGGGGCTCTGTTCAAGTGCTTCCAAAACCTGAGTCTGGAAGTGACTATTCACAATGACTGCCCTTGTGCAAAGATGCAGTCCTTACTTAGAAATTgtaacttgaaatttcaagagttgttggtgaaagtgtatttagtctgtgca Alignment from Exonerate_coding2genome GTATGGACGTCCGGAATGGGACGGACAAAGATGCAGGGGCCCTCTTCAAGTGCTTCCAAAACCTGGGTTTTGAAGTAACCGTCCACAATGACTGCTCTTGTGCAAAGATGCAAGATCTGCTTAGAAAAG aaacccggtttgactagtttaccccagtctgatgtcaccatcctttctagGTATGGGTGTCAGAACTGGGACAGGTAAAGATGCAGGGGCTCTGTTCAAGTGCTTCCAAAACCTGAGTCTGGAAGTGACTATTCACAATGACTGCCCTTGTGCAAAGATGCAGTCCTTACTTAGAAATTgtaacttgaaatttcaagagttgttggtgaaagtgtatttagtctgtgca Alignment from GeneWise GTATGGACGTCCGGAATGGGACGGACAAAGATGCAGGGGCCCTCTTCAAGTGCTTCCAAAACCTGGGTTTTGAAGTAACCGTCCACAATGACTGCTCTTGTGCAAAGATGCAAGATCTGCTTAGAAAAG aaacccggtttgactagtttaccccagtctgatgtcaccatcctttctagGTATGGGTGTCAGAACTGGGACAGGTAAAGATGCAGGGGCTCTGTTCAAGTGCTTCCAAAACCTGAGTCTGGAAGTGACTATTCACAATGACTGCCCTTGTGCAAAGATGCAGTCCTTACTTAGAAATTgtaacttgaaatttcaagagttgttggtgaaagtgtatttagtctgtgca #### Catsper1_ID932_9 --> 0 - 1 Original Alignment CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAg ctgcatatagggattgaatcctagagttgatattttttttcttactgcagCAAGCTCCCCGGGTCCATGAAAAGTTGTTGGGTGACTCACTAACAGAACTCAATAAGGCAggtgagtattggacttcaacttaatctgcactcgaattaatccttaaagga Alignment from CESAR CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAg ctgcatatagggattgaatcctagagttgatattttttttcttactgcagCAAGCTCCCCGGGTCCATGAAAAGTTGTTGGGTGACTCACTAACAGAACTCAATAAGGCAggtgagtattggacttcaacttaatctgcactcgaattaatccttaaagga Alignment from Spaln_aa2Genome CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAG ctgcatatagggattgaatcctagagttgatattttttttcttactgcagCAAGCTCCCCGGGTCCATGAAAAGTTGTTGGGTGACTCACTAACAGAACTCAATAAGGCAGgtgagtattggacttcaacttaatctgcactcgaattaatccttaaagga Alignment from Spaln_nt2Genome CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAG ctgcatatagggattgaatcctagagttgatattttttttcttactgcagCAAGCTCCCCGGGTCCATGAAAAGTTGTTGGGTGACTCACTAACAGAACTCAATAAGGCAGgtgagtattggacttcaacttaatctgcactcgaattaatccttaaagga Alignment from Pairagon CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAG ctgcatatagggattgaatcctagagttgatattttttttcttactgcagCAAGCTCCCCGGGTCCATGAAAAGTTGTTGGGTGACTCACTAACAGAACTCAATAAGGCAGgtgagtattggacttcaacttaatctgcactcgaattaatccttaaagga Alignment from Exonerate_protein2genome CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAG ctgcatatagggattgaatcctagagttgatattttttttcttactgcagCAAGCTCCCCGGGTCCATGAAAAGTTGTTGGGTGACTCACTAACAGAACTCAATAAGGCAGgtgagtattggacttcaacttaatctgcactcgaattaatccttaaagga Alignment from Exonerate_coding2genome CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAG ctgcatatagggattgaatcctagagttgatattttttttcttactgcagCAAGCTCCCCGGGTCCATGAAAAGTTGTTGGGTGACTCACTAACAGAACTCAATAAGGCAGgtgagtattggacttcaacttaatctgcactcgaattaatccttaaagga Alignment from GeneWise CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAG ctgcatatagggattgaatcctagagttgatattttttttcttactgcagCAAGCTCCCCGGGTCCATGAAAAGTTGTTGGGTGACTCACTAACAGAACTCAATAAGGCAGgtgagtattggacttcaacttaatctgcactcgaattaatccttaaagga #### Cbwd1_ID5360_8 --> 1 - 2 Original Alignment gCAAGTTGCATTGGCAGACATGATTCTCATCAATAAAACAGACTTGGTTTCAGAAGAGGAGCTAAACAACTTAAGAACAACTATCag aacatcgaggtcagacatcacccacatttacggctgtcttcgctgtgcagaCAGGTTGCGTTGGCGGATATGATTCCCATCAATAAGACTGACTTGATTTCAGAAGATGAACTGAATAACTTAACAACAACTATCaggtgagtaggagcagaggtccctagcatgggatataaagttaagaacatgt Alignment from CESAR gCAAGTTGCATTGGCAGACATGATTCTCATCAATAAAACAGACTTGGTTTCAGAAGAGGAGCTAAACAACTTAAGAACAACTATCag aacatcgaggtcagacatcacccacatttacggctgtcttcgctgtgcagaCAGGTTGCGTTGGCGGATATGATTCCCATCAATAAGACTGACTTGATTTCAGAAGATGAACTGAATAACTTAACAACAACTATCaggtgagtaggagcagaggtccctagcatgggatataaagttaagaacatgt Alignment from Spaln_aa2Genome GCAAGTTGCATTGGCAGACATGATTCTCATCAATAAAACAGACTTGGTTTCAGAAGAGGAGCTAAACAACTTAAGAACAACTATCAG aacatcgaggtcagacatcacccacatttacggctgtcttcgctgtgcagACAGGTTGCGTTGGCGGATATGATTCCCATCAATAAGACTGACTTGATTTCAGAAGATGAACTGAATAACTTAACAACAACTATCAGgtgagtaggagcagaggtccctagcatgggatataaagttaagaacatgt Alignment from Spaln_nt2Genome GCAAGTTGCATTGGCAGACATGATTCTCATCAATAAAACAGACTTGGTTTCAGAAGAGGAGCTAAACAACTTAAGAACAACTATCAG aacatcgaggtcagacatcacccacatttacggctgtcttcgctgtgcagACAGGTTGCGTTGGCGGATATGATTCCCATCAATAAGACTGACTTGATTTCAGAAGATGAACTGAATAACTTAACAACAACTATCAGgtgagtaggagcagaggtccctagcatgggatataaagttaagaacatgt Alignment from Pairagon GCAAGTTGCATTGGCAGACATGATTCTCATCAATAAAACAGACTTGGTTTCAGAAGAGGAGCTAAACAACTTAAGAACAACTATCAG aacatcgaggtcagacatcacccacatttacggctgtcttcgctgtgcagACAGGTTGCGTTGGCGGATATGATTCCCATCAATAAGACTGACTTGATTTCAGAAGATGAACTGAATAACTTAACAACAACTATCAGgtgagtaggagcagaggtccctagcatgggatataaagttaagaacatgt Alignment from Exonerate_protein2genome GCAAGTTGCATTGGCAGACATGATTCTCATCAATAAAACAGACTTGGTTTCAGAAGAGGAGCTAAACAACTTAAGAACAACTATCAG aacatcgaggtcagacatcacccacatttacggctgtcttcgctgtgcagACAGGTTGCGTTGGCGGATATGATTCCCATCAATAAGACTGACTTGATTTCAGAAGATGAACTGAATAACTTAACAACAACTATCAGgtgagtaggagcagaggtccctagcatgggatataaagttaagaacatgt Alignment from Exonerate_coding2genome GCAAGTTGCATTGGCAGACATGATTCTCATCAATAAAACAGACTTGGTTTCAGAAGAGGAGCTAAACAACTTAAGAACAACTATCAG aacatcgaggtcagacatcacccacatttacggctgtcttcgctgtgcagACAGGTTGCGTTGGCGGATATGATTCCCATCAATAAGACTGACTTGATTTCAGAAGATGAACTGAATAACTTAACAACAACTATCAGgtgagtaggagcagaggtccctagcatgggatataaagttaagaacatgt Alignment from GeneWise -CAAGTTGCATTGGCAGACATGATTCTCATCAATAAAACAGACTTGGTTTCAGAAGAGGAGCTAAACAACTTAAGAACAACTATCAG aacatcgaggtcagacatcacccacatttacggctgtcttcgctgtgcagACAGGTTGCGTTGGCGGATATGATTCCCATCAATAAGACTGACTTGATTTCAGAAGATGAACTGAATAACTTAACAACAACTATCAGgtgagtaggagcagaggtccctagcatgggatataaagttaagaacatgt #### Cbwd1_ID5364_6 --> 2 - 0 Original Alignment gtATCATAACTGTTGTAGATTCAAAATATGGATTAAAA cctagtaataacatattcagaacagagatcctcatacattgactccacaggtATAATAACTGTTGTTGATTCAAAGCATGGACTAAAAgtaggctgtacttagggcattttgaacaccattaaggatgcacattttgt Alignment from CESAR gtATCATAACTGTTGTAGATTCAAAATATGGATTAAAA cctagtaataacatattcagaacagagatcctcatacattgactccacaggtATAATAACTGTTGTTGATTCAAAGCATGGACTAAAAgtaggctgtacttagggcattttgaacaccattaaggatgcacattttgt Alignment from Spaln_aa2Genome GTATCATAACTGTTGTAGATTCAAAATATGGATTAAAA cctagtaataacatattcagaacagagatcctcatacattgactccacagGTATAATAACTGTTGTTGATTCAAAGCATGGACTAAAAgtaggctgtacttagggcattttgaacaccattaaggatgcacattttgt Alignment from Spaln_nt2Genome GTATCATAACTGTTGTAGATTCAAAATATGGATTAAAA cctagtaataacatattcagaacagagatcctcatacattgactccacagGTATAATAACTGTTGTTGATTCAAAGCATGGACTAAAAgtaggctgtacttagggcattttgaacaccattaaggatgcacattttgt Alignment from Pairagon GTATCATAACTGTTGTAGATTCAAAATATGGATTAAAA cctagtaataacatattcagaacagagatcctcatacattgactccacagGTATAATAACTGTTGTTGATTCAAAGCATGGACTAAAAgtaggctgtacttagggcattttgaacaccattaaggatgcacattttgt Alignment from Exonerate_protein2genome GTATCATAACTGTTGTAGATTCAAAATATGGATTAAAA cctagtaataacatattcagaacagagatcctcatacattgactccacagGTATAATAACTGTTGTTGATTCAAAGCATGGACTAAAAgtaggctgtacttagggcattttgaacaccattaaggatgcacattttgt Alignment from Exonerate_coding2genome GTATCATAACTGTTGTAGATTCAAAATATGGATTAAAA cctagtaataacatattcagaacagagatcctcatacattgactccacagGTATAATAACTGTTGTTGATTCAAAGCATGGACTAAAAgtaggctgtacttagggcattttgaacaccattaaggatgcacattttgt Alignment from GeneWise cctagtaataacatattcagaacagagatcctcatacattgactccacaggtataataactgttgttgattcaaagcatggactaaaagtaggctgtacttagggcattttgaacaccattaaggatgcacattttgt #### Cbwd1_ID5369_2 --> 2 - 1 Original Alignment gtGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAg tggtgtatagcctgcttacctagctattttgtctgtcttctttccgttaggtGCTGGAAAGACCACACTCCTGAATTACTTCCTGTCAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAggtaagttaagggcagagcacaattaatggaagcttgggctagattcagta Alignment from CESAR gtGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAg tggtgtatagcctgcttacctagctattttgtctgtcttctttccgttaggtGCTGGAAAGACCACACTCCTGAATTACTTCCTGTCAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAggtaagttaagggcagagcacaattaatggaagcttgggctagattcagta Alignment from Spaln_aa2Genome GTGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAG tggtgtatagcctgcttacctagctattttgtctgtcttctttccgttagGTGCTGGAAAGACCACACTCCTGAATTACTTCCTGTCAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAGgtaagttaagggcagagcacaattaatggaagcttgggctagattcagta Alignment from Spaln_nt2Genome GTGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAG tggtgtatagcctgcttacctagctattttgtctgtcttctttccgttagGTGCTGGAAAGACCACACTCCTGAATTACTTCCTGTCAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAGgtaagttaagggcagagcacaattaatggaagcttgggctagattcagta Alignment from Pairagon GTGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAG tggtgtatagcctgcttacctagctattttgtctgtcttctttccgttagGTGCTGGAAAGACCACACTCCTGAATTACTTCCTGTCAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAGgtaagttaagggcagagcacaattaatggaagcttgggctagattcagta Alignment from Exonerate_protein2genome ACTTAGGTGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAG tggtgtatagcctgcttacctagctattttgtctgtcttctttcCGTTAGGTGCTGGAAAGACCACACTCCTGAATTACTTCCTGTCAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAGgtaagttaagggcagagcacaattaatggaagcttgggctagattcagta Alignment from Exonerate_coding2genome ACTTAGGTGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAG tggtgtatagcctgcttacctagctattttgtctgtcttctttcCGTTAGGTGCTGGAAAGACCACACTCCTGAATTACTTCCTGTCAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAGgtaagttaagggcagagcacaattaatggaagcttgggctagattcagta Alignment from GeneWise GTGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAGGGAG tggtgtatagcctgcttacctagctattttgtctgtcttctttccgttagGTGCTGGAAAGACCACACTCCTGAATTACTTCCTGTCAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAGGTAAgttaagggcagagcacaattaatggaagcttgggctagattcagta #### Ccdc147_ID10401_3 --> 0 - 2 Original Alignment GAAATCGAGAAAGCCTGGAAGATGGTGGACTCGGCATATGACAAGGAGCAAAAGGCCAAGGAGACAATTCTTGCCCTGAAGGAGGAAATAGTGAACCTGACCAAACTAGTTGAGCAGGGGTCTGGACTGTCAATGGATCAGGACAGCaa tacagggggattttgttgtgcctctgtaaaatttttttttttttttacagGAGGTTGAGAAAGCTTGGAAGATGGTGGACTCAGCATATAAAAAGGATCAGGAGGCTAAGGAGATGATATTTTCCTTCAAGGAGGAGGTCGTGAATCTT---GACCTCGTTGAGCATGGATCTGGGCTATCAATGGATCAAGAGAGCaagtaagagagcaagtgggtgacagtaggaagagagtaaccttgatctgatt Alignment from CESAR GAAATCGAGAAAGCCTGGAAGATGGTGGACTCGGCATATGACAAGGAGCAAAAGGCCAAGGAGACAATTCTTGCCCTGAAGGAGGAAATAGTGAACCTGACCAAACTAGTTGAGCAGGGGTCTGGACTGTCAATGGATCAGGACAGCaa tacagggggattttgttgtgcctctgtaaaatttttttttttttttacagGAGGTTGAGAAAGCTTGGAAGATGGTGGACTCAGCATATAAAAAGGATCAGGAGGCTAAGGAGATGATATTTTCCTTCAAGGAGGAGGTCGTGAATCTTGAC---CTCGTTGAGCATGGATCTGGGCTATCAATGGATCAAGAGAGCaagtaagagagcaagtgggtgacagtaggaagagagtaaccttgatctgatt Alignment from Spaln_aa2Genome GAAATCGAGAAAGCCTGGAAGATGGTGGACTCGGCATATGACAAGGAGCAAAAGGCCAAGGAGACAATTCTTGCCCTGAAGGAGGAAATAGTGAACCTGACCAAACTAGTTGAGCAGGGGTCTGGACTGTCAATGGATCAGGACAGCAA tacagggggattttgttgtgcctctgtaaaatttttttttttttttacagGAGGTTGAGAAAGCTTGGAAGATGGTGGACTCAGCATATAAAAAGGATCAGGAGGCTAAGGAGATGATATTTTCCTTCAAGGAGGAGGTCGTGAATCTT---GACCTCGTTGAGCATGGATCTGGGCTATCAATGGATCAAGAGAGCAAgtaagagagcaagtgggtgacagtaggaagagagtaaccttgatctgatt Alignment from Spaln_nt2Genome GAAATCGAGAAAGCCTGGAAGATGGTGGACTCGGCATATGACAAGGAGCAAAAGGCCAAGGAGACAATTCTTGCCCTGAAGGAGGAAATAGTGAACCTGACCAAACTAGTTGAGCAGGGGTCTGGACTGTCAATGGATCAGGACAGCAA tacagggggattttgttgtgcctctgtaaaatttttttttttttttacagGAGGTTGAGAAAGCTTGGAAGATGGTGGACTCAGCATATAAAAAGGATCAGGAGGCTAAGGAGATGATATTTTCCTTCAAGGAGGAGGTCGTGAATCT---TGACCTCGTTGAGCATGGATCTGGGCTATCAATGGATCAAGAGAGCAAgtaagagagcaagtgggtgacagtaggaagagagtaaccttgatctgatt Alignment from Pairagon GAAATCGAGAAAGCCTGGAAGATGGTGGACTCGGCATATGACAAGGAGCAAAAGGCCAAGGAGACAATTCTTGCCCTGAAGGAGGAAATAGTGAA-CCTGACCAAACTAGTTGAGCAGGGGTCTGGACTGTCAATGGATCAGGACAGCAA tacagggggattttgttgtgcctctgtaaaatttttttttttttttacagGAGGTTGAGAAAGCTTGGAAGATGGTGGACTCAGCATATAAAAAGGATCAGGAGGCTAAGGAGATGATATTTTCCTTCAAGGAGGAGGTCGTGAATCTTGAC----CTCGTTGAGCATGGATCTGGGCTATCAATGGATCAAGAGAGCAAgtaagagagcaagtgggtgacagtaggaagagagtaaccttgatctgatt Alignment from Exonerate_protein2genome GAAATCGAGAAAGCCTGGAAGATGGTGGACTCGGCATATGACAAGGAGCAAAAGGCCAAGGAGACAATTCTTGCCCTGAAGGAGGAAATAGTGAACCTGACCAAACTAGTTGAGCAGGGGTCTGGACTGTCAATGGATCAGGACAGCAA tacagggggattttgttgtgcctctgtaaaatttttttttttttttacagGAGGTTGAGAAAGCTTGGAAGATGGTGGACTCAGCATATAAAAAGGATCAGGAGGCTAAGGAGATGATATTTTCCTTCAAGGAGGAGGTCGTGAATCTT---GACCTCGTTGAGCATGGATCTGGGCTATCAATGGATCAAGAGAGCAAgtaagagagcaagtgggtgacagtaggaagagagtaaccttgatctgatt Alignment from Exonerate_coding2genome GAAATCGAGAAAGCCTGGAAGATGGTGGACTCGGCATATGACAAGGAGCAAAAGGCCAAGGAGACAATTCTTGCCCTGAAGGAGGAAATAGTGAACCTGACCAAACTAGTTGAGCAGGGGTCTGGACTGTCAATGGATCAGGACAGCAA tacagggggattttgttgtgcctctgtaaaatttttttttttttttacagGAGGTTGAGAAAGCTTGGAAGATGGTGGACTCAGCATATAAAAAGGATCAGGAGGCTAAGGAGATGATATTTTCCTTCAAGGAGGAGGTCGTGAATCTT---GACCTCGTTGAGCATGGATCTGGGCTATCAATGGATCAAGAGAGCAAgtaagagagcaagtgggtgacagtaggaagagagtaaccttgatctgatt Alignment from GeneWise GAAATCGAGAAAGCCTGGAAGATGGTGGACTCGGCATATGACAAGGAGCAAAAGGCCAAGGAGACAATTCTTGCCCTGAAGGAGGAAATAGTGAACCTGACCAAACTAGTTGAGCAGGGGTCTGGACTGTCAATGGATCAGGACAGCAA tacagggggattttgttgtgcctctgtaaaatttttttttttttttacagGAGGTTGAGAAAGCTTGGAAGATGGTGGACTCAGCATATAAAAAGGATCAGGAGGCTAAGGAGATGATATTTTCCTTCAAGGAGGAGGTCGTGAATCTTGAC---CTCGTTGAGCATGGATCTGGGCTATCAATGGATCAAGAGAGCAAgtaagagagcaagtgggtgacagtaggaagagagtaaccttgatctgatt #### Ccdc172_ID12725_5 --> 2 - 1 Original Alignment aaATGAAGTCGGTGGAACGTAACCGTGGACAGTTATGGGAACTCCAAAAACTAAAAAATGAACTGTTACAAGAATTATTTACTCTCCAGAAAAAGCTTAAAg tgggagcacttgagaacttagtgcttagggggcggtcggtctctctgcagaaATGAAGCCAGCAGAGCATAATCATGGACAGTTAAGGGCACTTCAAAAGCTAAAAAACAAACTGCTGAAAGAACTATTTGCTCTCCAGAAGAAGCTTAAGcgtaatggctttacttgcctccttgatcttgattaacacctcatcatttgt Alignment from CESAR aaATGAAGTCGGTGGAACGTAACCGTGGACAGTTATGGGAACTCCAAAAACTAAAAAATGAACTGTTACAAGAATTATTTACTCTCCAGAAAAAGCTTAAAg tgggagcacttgagaacttagtgcttagggggcggtcggtctctctgcagaaATGAAGCCAGCAGAGCATAATCATGGACAGTTAAGGGCACTTCAAAAGCTAAAAAACAAACTGCTGAAAGAACTATTTGCTCTCCAGAAGAAGCTTAAGcgtaatggctttacttgcctccttgatcttgattaacacctcatcatttgt Alignment from Spaln_aa2Genome AAATGAAGTCGGTGGAACGTAACCGTGGACAGTTATGGGAACTCCAAAAACTAAAAAATGAACTGTTACAAGAATTATTTACTCTCCAGAAAAAGCTTAAAG tgggagcacttgagaacttagtgcttagggggcggtcggtctctctgcagAAATGAAGCCAGCAGAGCATAATCATGGACAGTTAAGGGCACTTCAAAAGCTAAAAAACAAACTGCTGAAAGAACTATTTGCTCTCCAGAAGAAGCTTAAGCgtaatggctttacttgcctccttgatcttgattaacacctcatcatttgt Alignment from Spaln_nt2Genome AAATGAAGTCGGTGGAACGTAACCGTGGACAGTTATGGGAACTCCAAAAACTAAAAAATGAACTGTTACAAGAATTATTTACTCTCCAGAAAAAGCTTAAAG tgggagcacttgagaacttagtgcttagggggcggtcggtctctctgcagAAATGAAGCCAGCAGAGCATAATCATGGACAGTTAAGGGCACTTCAAAAGCTAAAAAACAAACTGCTGAAAGAACTATTTGCTCTCCAGAAGAAGCTTAAGCgtaatggctttacttgcctccttgatcttgattaacacctcatcatttgt Alignment from Pairagon AAATGAAGTCGGTGGAACGTAACCGTGGACAGTTATGGGAACTCCAAAAACTAAAAAATGAACTGTTACAAGAATTATTTACTCTCCAGAAAAAGCTTAAAG tgggagcacttgagaacttagtgcttagggggcggtcggtctctctgcagAAATGAAGCCAGCAGAGCATAATCATGGACAGTTAAGGGCACTTCAAAAGCTAAAAAACAAACTGCTGAAAGAACTATTTGCTCTCCAGAAGAAGCTTAAGCgtaatggctttacttgcctccttgatcttgattaacacctcatcatttgt Alignment from Exonerate_protein2genome AAATGAAGTCGGTGGAACGTAACCGTGGACAGTTATGGGAACTCCAAAAACTAAAAAATGAACTGTTACAAGAATTATTTACTCTCCAGAAAAAGCTTAAAG tgggagcacttgagaacttagtgcttagggggcggtcggtctctctgcagAAATGAAGCCAGCAGAGCATAATCATGGACAGTTAAGGGCACTTCAAAAGCTAAAAAACAAACTGCTGAAAGAACTATTTGCTCTCCAGAAGAAGCTTAAGCgtaatggctttacttgcctccttgatcttgattaacacctcatcatttgt Alignment from Exonerate_coding2genome AAATGAAGTCGGTGGAACGTAACCGTGGACAGTTATGGGAACTCCAAAAACTAAAAAATGAACTGTTACAAGAATTATTTACTCTCCAGAAAAAGCTTAAAG tgggagcacttgagaacttagtgcttagggggcggtcggtctctctgcagAAATGAAGCCAGCAGAGCATAATCATGGACAGTTAAGGGCACTTCAAAAGCTAAAAAACAAACTGCTGAAAGAACTATTTGCTCTCCAGAAGAAGCTTAAGCgtaatggctttacttgcctccttgatcttgattaacacctcatcatttgt Alignment from GeneWise AAATGAAGTCGGTGGAACGTAACCGTGGACAGTTATGGGAACTCCAAAAACTAAAAAATGAACTGTTACAAGAATTATTTACTCTCCAGAAAAAGCTTAAAG tgggagcacttgagaacttagtgcttagggggcggtcggtctctctgcagAAATGAAGCCAGCAGAGCATAATCATGGACAGTTAAGGGCACTTCAAAAGCTAAAAAACAAACTGCTGAAAGAACTATTTGCTCTCCAGAAGAAGCTTAAGCgtaatggctttacttgcctccttgatcttgattaacacctcatcatttgt #### Ccdc88b_ID1823_26 --> 2 - 1 Original Alignment gaTCTGGTGTGGAATGGGATGGCTCCATTAAGACCCTCTCGGAGCATGAAGCAGATGACACTCGAGAGg tgacatgcagttatgatttaatcaaaccagatgactctcctttcttgcaggaTCTGCAGTGGAGTGGGAGGGCTCAGTTAAGCCTCTCTCAGAGCAAGAAGCAGATGACACTCGAGAGggtaggtcttagttactggaacagtagtacttagttactagaacccttctg Alignment from CESAR gaTCTGGTGTGGAATGGGATGGCTCCATTAAGACCCTCTCGGAGCATGAAGCAGATGACACTCGAGAGg tgacatgcagttatgatttaatcaaaccagatgactctcctttcttgcaggaTCTGCAGTGGAGTGGGAGGGCTCAGTTAAGCCTCTCTCAGAGCAAGAAGCAGATGACACTCGAGAGggtaggtcttagttactggaacagtagtacttagttactagaacccttctg Alignment from Spaln_aa2Genome GATCTGGTGTGGAATGGGATGGCTCCATTAAGACCCTCTCGGAGCATGAAGCAGATGACACTCGAGAGG tgacatgcagttatgatttaatcaaaccagatgactctcctttcttgcagGATCTGCAGTGGAGTGGGAGGGCTCAGTTAAGCCTCTCTCAGAGCAAGAAGCAGATGACACTCGAGAGGgtaggtcttagttactggaacagtagtacttagttactagaacccttctg Alignment from Spaln_nt2Genome GATCTGGTGTGGAATGGGATGGCTCCATTAAGACCCTCTCGGAGCATGAAGCAGATGACACTCGAGAGG tgacatgcagttatgatttaatcaaaccagatgactctcctttcttgcagGATCTGCAGTGGAGTGGGAGGGCTCAGTTAAGCCTCTCTCAGAGCAAGAAGCAGATGACACTCGAGAGGgtaggtcttagttactggaacagtagtacttagttactagaacccttctg Alignment from Pairagon GATCTGGTGTGGAATGGGATGGCTCCATTAAGACCCTCTCGGAGCATGAAGCAGATGACACTCGAGAGG tgacatgcagttatgatttaatcaaaccagatgactctcctttcttgcagGATCTGCAGTGGAGTGGGAGGGCTCAGTTAAGCCTCTCTCAGAGCAAGAAGCAGATGACACTCGAGAGGgtaggtcttagttactggaacagtagtacttagttactagaacccttctg Alignment from Exonerate_protein2genome GATCTGGTGTGGAATGGGATGGCTCCATTAAGACCCTCTCGGAGCATGAAGCAGATGACACTCGAGAGG tgacatgcagttatgatttaatcaaaccagatgactctcctttcttgcagGATCTGCAGTGGAGTGGGAGGGCTCAGTTAAGCCTCTCTCAGAGCAAGAAGCAGATGACACTCGAGAGGgtaggtcttagttactggaacagtagtacttagttactagaacccttctg Alignment from Exonerate_coding2genome tgacatgcagttatgatttaatcaaaccagatgactctcctttcttgcaggatctgcagtggagtgggagggctcagttaagcctctctcagagcaagaagcagatgacactcgagagggtaggtcttagttactggaacagtagtacttagttactagaacccttctg Alignment from GeneWise GATCTGGTGTGGAATGGGATGGCTCCATTAAGACCCTCTCGGAGCATGAAGCAGATGACACTCGAGAGG tgacatgcagttatgatttaatcaaaccagatgactctcctttcttgcagGATCTGCAGTGGAGTGGGAGGGCTCAGTTAAGCCTCTCTCAGAGCAAGAAGCAGATGACACTCGAGAGGgtaggtcttagttactggaacagtagtacttagttactagaacccttctg #### Ccdc88b_ID1837_12 --> 0 - 1 Original Alignment GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGg aggcctaatggacagacagctctggcactttttttttttttttttaatagGACCTGGACTCACTGCGGCACCAGTTGGAACAGCTAGTGGAAGAGAATGTAGAGCTAGAGCTGGAACTGCAAAGAAGTTTGGAGCCACCTCCAGGCTCCCCTGGGGAGggtaagacaagtcttgtgtagcagacaggatttggcaaggaacctttagtc Alignment from CESAR GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGg aggcctaatggacagacagctctggcactttttttttttttttttaatagGACCTGGACTCACTGCGGCACCAGTTGGAACAGCTAGTGGAAGAGAATGTAGAGCTAGAGCTGGAACTGCAAAGAAGTTTGGAGCCACCTCCAGGCTCCCCTGGGGAGggtaagacaagtcttgtgtagcagacaggatttggcaaggaacctttagtc Alignment from Spaln_aa2Genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG aggcctaatggacagacagctctggcactttttttttttttttttaatagGACCTGGACTCACTGCGGCACCAGTTGGAACAGCTAGTGGAAGAGAATGTAGAGCTAGAGCTGGAACTGCAAAGAAGTTTGGAGCCACCTCCAGGCTCCCCTGGGGAGGgtaagacaagtcttgtgtagcagacaggatttggcaaggaacctttagtc Alignment from Spaln_nt2Genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG aggcctaatggacagacagctctggcactttttttttttttttttaatagGACCTGGACTCACTGCGGCACCAGTTGGAACAGCTAGTGGAAGAGAATGTAGAGCTAGAGCTGGAACTGCAAAGAAGTTTGGAGCCACCTCCAGGCTCCCCTGGGGAGGgtaagacaagtcttgtgtagcagacaggatttggcaaggaacctttagtc Alignment from Pairagon GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG aggcctaatggacagacagctctggcactttttttttttttttttaatagGACCTGGACTCACTGCGGCACCAGTTGGAACAGCTAGTGGAAGAGAATGTAGAGCTAGAGCTGGAACTGCAAAGAAGTTTGGAGCCACCTCCAGGCTCCCCTGGGGAGGgtaagacaagtcttgtgtagcagacaggatttggcaaggaacctttagtc Alignment from Exonerate_protein2genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG aggcctaatggacagacagctctggcactttttttttttttttttaatagGACCTGGACTCACTGCGGCACCAGTTGGAACAGCTAGTGGAAGAGAATGTAGAGCTAGAGCTGGAACTGCAAAGAAGTTTGGAGCCACCTCCAGGCTCCCCTGGGGAGGgtaagacaagtcttgtgtagcagacaggatttggcaaggaacctttagtc Alignment from Exonerate_coding2genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG aggcctaatggacagacagctctggcactttttttttttttttttaatagGACCTGGACTCACTGCGGCACCAGTTGGAACAGCTAGTGGAAGAGAATGTAGAGCTAGAGCTGGAACTGCAAAGAAGTTTGGAGCCACCTCCAGGCTCCCCTGGGGAGGgtaagacaagtcttgtgtagcagacaggatttggcaaggaacctttagtc Alignment from GeneWise GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG aggcctaatggacagacagctctggcactttttttttttttttttaatagGACCTGGACTCACTGCGGCACCAGTTGGAACAGCTAGTGGAAGAGAATGTAGAGCTAGAGCTGGAACTGCAAAGAAGTTTGGAGCCACCTCCAGGCTCCCCTGGGGAGGgtaagacaagtcttgtgtagcagacaggatttggcaaggaacctttagtc #### Ccs_ID663_5 --> 1 - 0 Original Alignment cTGTGGGGACCATTTTAACCCTGATGGAGCATCTCATGGGGGTCCTCAGGACACTGATCGG tgagtgctgaacacaattcttagcagttttctcttctgatctgatcacagcTGTGGAGATCACTTCAACCCAGATGGAGGCTCTCCTGGTGGCCCTCAGGATACAGACAGGgtgaggactttagattaggctctcatcacagagagaggagccacaagctc Alignment from CESAR cTGTGGGGACCATTTTAACCCTGATGGAGCATCTCATGGGGGTCCTCAGGACACTGATCGG tgagtgctgaacacaattcttagcagttttctcttctgatctgatcacagcTGTGGAGATCACTTCAACCCAGATGGAGGCTCTCCTGGTGGCCCTCAGGATACAGACAGGgtgaggactttagattaggctctcatcacagagagaggagccacaagctc Alignment from Spaln_aa2Genome CTGTGGGGACCATTTTAACCCTGATGGAGCATCTCATGGGGGTCCTCAGGACACTGATCGG tgagtgctgaacacaattcttagcagttttctcttctgatctgatcacagCTGTGGAGATCACTTCAACCCAGATGGAGGCTCTCCTGGTGGCCCTCAGGATACAGACAGGgtgaggactttagattaggctctcatcacagagagaggagccacaagctc Alignment from Spaln_nt2Genome CTGTGGGGACCATTTTAACCCTGATGGAGCATCTCATGGGGGTCCTCAGGACACTGATCGG tgagtgctgaacacaattcttagcagttttctcttctgatctgatcacagCTGTGGAGATCACTTCAACCCAGATGGAGGCTCTCCTGGTGGCCCTCAGGATACAGACAGGgtgaggactttagattaggctctcatcacagagagaggagccacaagctc Alignment from Pairagon CTGTGGGGACCATTTTAACCCTGATGGAGCATCTCATGGGGGTCCTCAGGACACTGATCGG tgagtgctgaacacaattcttagcagttttctcttctgatctgatcacagCTGTGGAGATCACTTCAACCCAGATGGAGGCTCTCCTGGTGGCCCTCAGGATACAGACAGGgtgaggactttagattaggctctcatcacagagagaggagccacaagctc Alignment from Exonerate_protein2genome CTGTGGGGACCATTTTAACCCTGATGGAGCATCTCATGGGGGTCCTCAGGACACTGATCGG tgagtgctgaacacaattcttagcagttttctcttctgatctgatcacagCTGTGGAGATCACTTCAACCCAGATGGAGGCTCTCCTGGTGGCCCTCAGGATACAGACAGGgtgaggactttagattaggctctcatcacagagagaggagccacaagctc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTGTGGGGACCATTTTAACCCTGATGGAGCATCTCATGGGGGTCCTCAGGACACTGATCGG tgagtgctgaacacaattcttagcagttttctcttctgatctgatcacagCTGTGGAGATCACTTCAACCCAGATGGAGGCTCTCCTGGTGGCCCTCAGGATACAGACAGGgtgaggactttagattaggctctcatcacagagagaggagccacaagctc #### Ccs_ID665_3 --> 2 - 1 Original Alignment gtGTCCAGAATGTGGACGTTCAGTTGGAGAACCAGATGGTGTTGGTGCAGACGACTCTGCCCAGCCAGGAGGTACAAGCACTCCTGGAAAGCACAGGGAGGCAGGCTGTACTCAAGGGTATGGGCAGTAGCCAATTAc ggaagccaactgtacacgatagttgattctgtctcctcttttgcctacaggtGTACAAAATGTGGATGTTCAGTTGGAGAATCAAATGAAATTGGTGCAGTCAACCCTGCCCAGTCAAGAAGTCCAGGCACTCCTACAGAGCTCAGGGAGGCAGGCTTTACTGAGGGGAATAGGGAGTAGCCAATTAcgtgagctgttgctgatgtattggtatatgactgctcctgacagtccttgt Alignment from CESAR gtGTCCAGAATGTGGACGTTCAGTTGGAGAACCAGATGGTGTTGGTGCAGACGACTCTGCCCAGCCAGGAGGTACAAGCACTCCTGGAAAGCACAGGGAGGCAGGCTGTACTCAAGGGTATGGGCAGTAGCCAATTAc ggaagccaactgtacacgatagttgattctgtctcctcttttgcctacaggtGTACAAAATGTGGATGTTCAGTTGGAGAATCAAATGAAATTGGTGCAGTCAACCCTGCCCAGTCAAGAAGTCCAGGCACTCCTACAGAGCTCAGGGAGGCAGGCTTTACTGAGGGGAATAGGGAGTAGCCAATTAcgtgagctgttgctgatgtattggtatatgactgctcctgacagtccttgt Alignment from Spaln_aa2Genome GTGTCCAGAATGTGGACGTTCAGTTGGAGAACCAGATGGTGTTGGTGCAGACGACTCTGCCCAGCCAGGAGGTACAAGCACTCCTGGAAAGCACAGGGAGGCAGGCTGTACTCAAGGGTATGGGCAGTAGCCAATTAC ggaagccaactgtacacgatagttgattctgtctcctcttttgcctacagGTGTACAAAATGTGGATGTTCAGTTGGAGAATCAAATGAAATTGGTGCAGTCAACCCTGCCCAGTCAAGAAGTCCAGGCACTCCTACAGAGCTCAGGGAGGCAGGCTTTACTGAGGGGAATAGGGAGTAGCCAATTACgtgagctgttgctgatgtattggtatatgactgctcctgacagtccttgt Alignment from Spaln_nt2Genome GTGTCCAGAATGTGGACGTTCAGTTGGAGAACCAGATGGTGTTGGTGCAGACGACTCTGCCCAGCCAGGAGGTACAAGCACTCCTGGAAAGCACAGGGAGGCAGGCTGTACTCAAGGGTATGGGCAGTAGCCAATTAC ggaagccaactgtacacgatagttgattctgtctcctcttttgcctacagGTGTACAAAATGTGGATGTTCAGTTGGAGAATCAAATGAAATTGGTGCAGTCAACCCTGCCCAGTCAAGAAGTCCAGGCACTCCTACAGAGCTCAGGGAGGCAGGCTTTACTGAGGGGAATAGGGAGTAGCCAATTACgtgagctgttgctgatgtattggtatatgactgctcctgacagtccttgt Alignment from Pairagon GTGTCCAGAATGTGGACGTTCAGTTGGAGAACCAGATGGTGTTGGTGCAGACGACTCTGCCCAGCCAGGAGGTACAAGCACTCCTGGAAAGCACAGGGAGGCAGGCTGTACTCAAGGGTATGGGCAGTAGCCAATTAC ggaagccaactgtacacgatagttgattctgtctcctcttttgcctacagGTGTACAAAATGTGGATGTTCAGTTGGAGAATCAAATGAAATTGGTGCAGTCAACCCTGCCCAGTCAAGAAGTCCAGGCACTCCTACAGAGCTCAGGGAGGCAGGCTTTACTGAGGGGAATAGGGAGTAGCCAATTACgtgagctgttgctgatgtattggtatatgactgctcctgacagtccttgt Alignment from Exonerate_protein2genome GTGTCCAGAATGTGGACGTTCAGTTGGAGAACCAGATGGTGTTGGTGCAGACGACTCTGCCCAGCCAGGAGGTACAAGCACTCCTGGAAAGCACAGGGAGGCAGGCTGTACTCAAGGGTATGGGCAGTAGCCAATTAC ggaagccaactgtacacgatagttgattctgtctcctcttttgcctacagGTGTACAAAATGTGGATGTTCAGTTGGAGAATCAAATGAAATTGGTGCAGTCAACCCTGCCCAGTCAAGAAGTCCAGGCACTCCTACAGAGCTCAGGGAGGCAGGCTTTACTGAGGGGAATAGGGAGTAGCCAATTACgtgagctgttgctgatgtattggtatatgactgctcctgacagtccttgt Alignment from Exonerate_coding2genome GTGTCCAGAATGTGGACGTTCAGTTGGAGAACCAGATGGTGTTGGTGCAGACGACTCTGCCCAGCCAGGAGGTACAAGCACTCCTGGAAAGCACAGGGAGGCAGGCTGTACTCAAGGGTATGGGCAGTAGCCAATTAC ggaagccaactgtacacgatagttgattctgtctcctcttttgcctacagGTGTACAAAATGTGGATGTTCAGTTGGAGAATCAAATGAAATTGGTGCAGTCAACCCTGCCCAGTCAAGAAGTCCAGGCACTCCTACAGAGCTCAGGGAGGCAGGCTTTACTGAGGGGAATAGGGAGTAGCCAATTACgtgagctgttgctgatgtattggtatatgactgctcctgacagtccttgt Alignment from GeneWise GTGTCCAGAATGTGGACGTTCAGTTGGAGAACCAGATGGTGTTGGTGCAGACGACTCTGCCCAGCCAGGAGGTACAAGCACTCCTGGAAAGCACAGGGAGGCAGGCTGTACTCAAGGGTATGGGCAGTAGCCAATTAC ggaagccaactgtacacgatagttgattctgtctcctcttttgcctacagGTGTACAAAATGTGGATGTTCAGTTGGAGAATCAAATGAAATTGGTGCAGTCAACCCTGCCCAGTCAAGAAGTCCAGGCACTCCTACAGAGCTCAGGGAGGCAGGCTTTACTGAGGGGAATAGGGAGTAGCCAATTACgtgagctgttgctgatgtattggtatatgactgctcctgacagtccttgt #### Cd5_ID2989_9 --> 2 - 1 Original Alignment tgTCTTTCCATCGAAGCCACACAGCAACTGTGCGGTCCCAAGTTGAGAACCCAACAGCCTCTCATGTGGACAATGAATACAGCCAGCCTCCCAGGAACTCTCACCTGTCTGCTTATCCAg ttttatttctgcagatgtaagcaatggttccaactttttctggtccctagtgTCTTTT---CAGAGCCACACAGCAACAGTACGGTCCCAAGTTGAAAATCCCACTACATCGCATGTTGTTAATGAATATAGCCAGCCAACCAGGAACTCACACCTGTCTGCTTATCCAagtaagaaggtatgcagttgttggggtgctttcatgaccagtgacagcaca Alignment from CESAR tgTCTTTCCATCGAAGCCACACAGCAACTGTGCGGTCCCAAGTTGAGAACCCAACAGCCTCTCATGTGGACAATGAATACAGCCAGCCTCCCAGGAACTCTCACCTGTCTGCTTATCCAg ttttatttctgcagatgtaagcaatggttccaactttttctggtccctagtgTCTTTTCAG---AGCCACACAGCAACAGTACGGTCCCAAGTTGAAAATCCCACTACATCGCATGTTGTTAATGAATATAGCCAGCCAACCAGGAACTCACACCTGTCTGCTTATCCAagtaagaaggtatgcagttgttggggtgctttcatgaccagtgacagcaca Alignment from Spaln_aa2Genome TGTCTTTCCATCGAAGCCACACAGCAACTGTGCGGTCCCAAGTTGAGAACCCAACAGCCTCTCATGTGGACAATGAATACAGCCAGCCTCCCAGGAACTCTCACCTGTCTGCTTATCCAG ttttatttctgcagatgtaagcaatggttccaactttttctggtccctagTGTCTTTTCAG---AGCCACACAGCAACAGTACGGTCCCAAGTTGAAAATCCCACTACATCGCATGTTGTTAATGAATATAGCCAGCCAACCAGGAACTCACACCTGTCTGCTTATCCAAgtaagaaggtatgcagttgttggggtgctttcatgaccagtgacagcaca Alignment from Spaln_nt2Genome TGTCTTTCCATCGAAGCCACACAGCAACTGTGCGGTCCCAAGTTGAGAACCCAACAGCCTCTCATGTGGACAATGAATACAGCCAGCCTCCCAGGAACTCTCACCTGTCTGCTTATCCAG ttttatttctgcagatgtaagcaatggttccaactttttctggtccctagTGTCTTT---TCAGAGCCACACAGCAACAGTACGGTCCCAAGTTGAAAATCCCACTACATCGCATGTTGTTAATGAATATAGCCAGCCAACCAGGAACTCACACCTGTCTGCTTATCCAAgtaagaaggtatgcagttgttggggtgctttcatgaccagtgacagcaca Alignment from Pairagon TGTCTTTCCATCGAAGCCACACAGCAACTGTGCGGTCCCAAGTTGAGAACCCAACAGCCTCTCATGTGGACAATGAATACAGCCAGCCTCCCAGGAACTCTCACCTGTCTGCTTATCCAG ttttatttctgcagatgtaagcaatggttccaactttttctggtccctagTGTCTTTTCA---GAGCCACACAGCAACAGTACGGTCCCAAGTTGAAAATCCCACTACATCGCATGTTGTTAATGAATATAGCCAGCCAACCAGGAACTCACACCTGTCTGCTTATCCAAgtaagaaggtatgcagttgttggggtgctttcatgaccagtgacagcaca Alignment from Exonerate_protein2genome TGTCTTTCCATCGAAGCCACACAGCAACTGTGCGGTCCCAAGTTGAGAACCCAACAGCCTCTCATGTGGACAATGAATACAGCCAGCCTCCCAGGAACTCTCACCTGTCTGCTTATCCAG ttttatttctgcagatgtaagcaatggttccaactttttctggtccctagTGTCTTTT---CAGAGCCACACAGCAACAGTACGGTCCCAAGTTGAAAATCCCACTACATCGCATGTTGTTAATGAATATAGCCAGCCAACCAGGAACTCACACCTGTCTGCTTATCCAAgtaagaaggtatgcagttgttggggtgctttcatgaccagtgacagcaca Alignment from Exonerate_coding2genome TGTCTTTCCATCGAAGCCACACAGCAACTGTGCGGTCCCAAGTTGAGAACCCAACAGCCTCTCATGTGGACAATGAATACAGCCAGCCTCCCAGGAACTCTCACCTGTCTGCTTATCCAG ttttatttctgcagatgtaagcaatggttccaactttttctggtccctagTGTCTTTT---CAGAGCCACACAGCAACAGTACGGTCCCAAGTTGAAAATCCCACTACATCGCATGTTGTTAATGAATATAGCCAGCCAACCAGGAACTCACACCTGTCTGCTTATCCAAgtaagaaggtatgcagttgttggggtgctttcatgaccagtgacagcaca Alignment from GeneWise TGTCTTTCCATCGAAGCCACACAGCAACTGTGCGGTCCCAAGTTGAGAACCCAACAGCCTCTCATGTGGACAATGAATACAGCCAGCCTCCCAGGAACTCTCACCTGTCTGCTTATCCAG ttttatttctgcagatgtaagcaatggttccaactttttctggtccctagTGTCTTTT---CAGAGCCACACAGCAACAGTACGGTCCCAAGTTGAAAATCCCACTACATCGCATGTTGTTAATGAATATAGCCAGCCAACCAGGAACTCACACCTGTCTGCTTATCCAAgtaagaaggtatgcagttgttggggtgctttcatgaccagtgacagcaca #### Cd5_ID2991_7 --> 2 - 1 Original Alignment gcCAAGACCCAAACCCAGCGGGCCTGGCCCCAGGCACTGTGGCAAGCATCATCCTGACCCTTGTACTCCTGGTGGTGCTGCTGGCCATGTGTGGTCCTCTGGTCTACAAGAAGCTGGTGAAGAAAt ctcctacccccattggagcgggatctcactgttctttttattctttgcaggtCAGGACCCAAACCCAGCAGGCTTGTCCCCAGGTACAGTGGTGATCATCATCTTGCCCCTTGTAATATTGGTGGTGCTATTAGGCATGTGTGGACCTCTAGTTTACAGTAAACTGGTGAAAAAAtgtatgattcagcttatcctactcttcacagcttaacacaattttttccta Alignment from CESAR gcCAAGACCCAAACCCAGCGGGCCTGGCCCCAGGCACTGTGGCAAGCATCATCCTGACCCTTGTACTCCTGGTGGTGCTGCTGGCCATGTGTGGTCCTCTGGTCTACAAGAAGCTGGTGAAGAAAt ctcctacccccattggagcgggatctcactgttctttttattctttgcaggtCAGGACCCAAACCCAGCAGGCTTGTCCCCAGGTACAGTGGTGATCATCATCTTGCCCCTTGTAATATTGGTGGTGCTATTAGGCATGTGTGGACCTCTAGTTTACAGTAAACTGGTGAAAAAAtgtatgattcagcttatcctactcttcacagcttaacacaattttttccta Alignment from Spaln_aa2Genome GCCAAGACCCAAACCCAGCGGGCCTGGCCCCAGGCACTGTGGCAAGCATCATCCTGACCCTTGTACTCCTGGTGGTGCTGCTGGCCATGTGTGGTCCTCTGGTCTACAAGAAGCTGGTGAAGAAAT ctcctacccccattggagcgggatctcactgttctttttattctttgcagGTCAGGACCCAAACCCAGCAGGCTTGTCCCCAGGTACAGTGGTGATCATCATCTTGCCCCTTGTAATATTGGTGGTGCTATTAGGCATGTGTGGACCTCTAGTTTACAGTAAACTGGTGAAAAAATgtatgattcagcttatcctactcttcacagcttaacacaattttttccta Alignment from Spaln_nt2Genome GCCAAGACCCAAACCCAGCGGGCCTGGCCCCAGGCACTGTGGCAAGCATCATCCTGACCCTTGTACTCCTGGTGGTGCTGCTGGCCATGTGTGGTCCTCTGGTCTACAAGAAGCTGGTGAAGAAAT ctcctacccccattggagcgggatctcactgttctttttattctttgcagGTCAGGACCCAAACCCAGCAGGCTTGTCCCCAGGTACAGTGGTGATCATCATCTTGCCCCTTGTAATATTGGTGGTGCTATTAGGCATGTGTGGACCTCTAGTTTACAGTAAACTGGTGAAAAAATgtatgattcagcttatcctactcttcacagcttaacacaattttttccta Alignment from Pairagon GCCAAGACCCAAACCCAGCGGGCCTGGCCCCAGGCACTGTGGCAAGCATCATCCTGACCCTTGTACTCCTGGTGGTGCTGCTGGCCATGTGTGGTCCTCTGGTCTACAAGAAGCTGGTGAAGAAAT ctcctacccccattggagcgggatctcactgttctttttattctttgcagGTCAGGACCCAAACCCAGCAGGCTTGTCCCCAGGTACAGTGGTGATCATCATCTTGCCCCTTGTAATATTGGTGGTGCTATTAGGCATGTGTGGACCTCTAGTTTACAGTAAACTGGTGAAAAAATgtatgattcagcttatcctactcttcacagcttaacacaattttttccta Alignment from Exonerate_protein2genome GCCAAGACCCAAACCCAGCGGGCCTGGCCCCAGGCACTGTGGCAAGCATCATCCTGACCCTTGTACTCCTGGTGGTGCTGCTGGCCATGTGTGGTCCTCTGGTCTACAAGAAGCTGGTGAAGAAAT ctcctacccccattggagcgggatctcactgttctttttattctttgcagGTCAGGACCCAAACCCAGCAGGCTTGTCCCCAGGTACAGTGGTGATCATCATCTTGCCCCTTGTAATATTGGTGGTGCTATTAGGCATGTGTGGACCTCTAGTTTACAGTAAACTGGTGAAAAAATgtatgattcagcttatcctactcttcacagcttaacacaattttttccta Alignment from Exonerate_coding2genome GCCAAGACCCAAACCCAGCGGGCCTGGCCCCAGGCACTGTGGCAAGCATCATCCTGACCCTTGTACTCCTGGTGGTGCTGCTGGCCATGTGTGGTCCTCTGGTCTACAAGAAGCTGGTGAAGAAAT ctcctacccccattggagcgggatctcactgttctttttattctttgcagGTCAGGACCCAAACCCAGCAGGCTTGTCCCCAGGTACAGTGGTGATCATCATCTTGCCCCTTGTAATATTGGTGGTGCTATTAGGCATGTGTGGACCTCTAGTTTACAGTAAACTGGTGAAAAAATgtatgattcagcttatcctactcttcacagcttaacacaattttttccta Alignment from GeneWise GCCAAGACCCAAACCCAGCGGGCCTGGCCCCAGGCACTGTGGCAAGCATCATCCTGACCCTTGTACTCCTGGTGGTGCTGCTGGCCATGTGTGGTCCTCTGGTCTACAAGAAGCTGGTGAAGAAAT ctcctacccccattggagcgggatctcactgttctttttattctttgcagGTCAGGACCCAAACCCAGCAGGCTTGTCCCCAGGTACAGTGGTGATCATCATCTTGCCCCTTGTAATATTGGTGGTGCTATTAGGCATGTGTGGACCTCTAGTTTACAGTAAACTGGTGAAAAAATgtatgattcagcttatcctactcttcacagcttaacacaattttttccta #### Cd5_ID2993_5 --> 2 - 1 Original Alignment ctCCTCCCAGATTGCAGCTGGTGCCAGGACACGAAGGCCTGAGGTGCACAGGTGTGGTGGAATTCTACAATGGCAGCTGGGGTGGC---ACCATCCTCTACAAGGCCAAGGACAGGCCCCTGGGCCTGGGGAACCTCATCTGTAAGTCTCTGCAGTGTGGCTCTTTCTTGACACATCTGTCCGGGACAGAGGCAGCAGGGACACCAGCTCCTGCAGAGCTGAGGGACCCCAGGCCCTTGCCAATTCGATGGGAGGCCCCGAACGGGAGCTGTGTCTCACTACAGCAGTGCTTCCAGAAAACAACGGCCCAGGAGGGCGGCCAGGCGCTCACCGTCATCTGCTCTg aacaagtcacattgatcacagcacgtttcctccttccatgtctcctgcagctCCTCCTCAAGTGCAATTAGTGCCAGGGCATGAGGACCTGAGGTGTACTGGTGTGGTGGAGTTCTACAATGACAGTTGGGAAGGAGGCACCATCCGCTACAAGGCCAAGGACAGGCCCCTGAGACTTGGTAAGCTCATCTGTAAGTCTCTGCAATGTGGCACATTCCTGACACACCTATCTGGGACGGAGCCCCCGAGAACCCCAGCTCCAGCAGACCTGAGGGTCCCCAGGCCTTTACCAGTGCAGTGGGAGGCCCCAAATGGAAGCTGTCTCTCACTGCATCAGTGTTTCCAGAAAACGACCGCCCAGGAGGGTAGCCAGGCTTTAACAGTCATCTGTTCTggtaagtagatgtggaccatgccctattagagttaccctataagagctttt Alignment from CESAR ctCCTCCCAGATTGCAGCTGGTGCCAGGACACGAAGGCCTGAGGTGCACAGGTGTGGTGGAATTCTACAATGGCAGCTGG---GGTGGCACCATCCTCTACAAGGCCAAGGACAGGCCCCTGGGCCTGGGGAACCTCATCTGTAAGTCTCTGCAGTGTGGCTCTTTCTTGACACATCTGTCCGGGACAGAGGCAGCAGGGACACCAGCTCCTGCAGAGCTGAGGGACCCCAGGCCCTTGCCAATTCGATGGGAGGCCCCGAACGGGAGCTGTGTCTCACTACAGCAGTGCTTCCAGAAAACAACGGCCCAGGAGGGCGGCCAGGCGCTCACCGTCATCTGCTCTg aacaagtcacattgatcacagcacgtttcctccttccatgtctcctgcagctCCTCCTCAAGTGCAATTAGTGCCAGGGCATGAGGACCTGAGGTGTACTGGTGTGGTGGAGTTCTACAATGACAGTTGGGAAGGAGGCACCATCCGCTACAAGGCCAAGGACAGGCCCCTGAGACTTGGTAAGCTCATCTGTAAGTCTCTGCAATGTGGCACATTCCTGACACACCTATCTGGGACGGAGCCCCCGAGAACCCCAGCTCCAGCAGACCTGAGGGTCCCCAGGCCTTTACCAGTGCAGTGGGAGGCCCCAAATGGAAGCTGTCTCTCACTGCATCAGTGTTTCCAGAAAACGACCGCCCAGGAGGGTAGCCAGGCTTTAACAGTCATCTGTTCTggtaagtagatgtggaccatgccctattagagttaccctataagagctttt Alignment from Spaln_aa2Genome CTCCTCCCAGATTGCAGCTGGTGCCAGGACACGAAGGCCTGAGGTGCACAGGTGTGGTGGAATTCTACAATGGCAGCTGG---GGTGGCACCATCCTCTACAAGGCCAAGGACAGGCCCCTGGGCCTGGGGAACCTCATCTGTAAGTCTCTGCAGTGTGGCTCTTTCTTGACACATCTGTCCGGGACAGAGGCAGCAGGGACACCAGCTCCTGCAGAGCTGAGGGACCCCAGGCCCTTGCCAATTCGATGGGAGGCCCCGAACGGGAGCTGTGTCTCACTACAGCAGTGCTTCCAGAAAACAACGGCCCAGGAGGGCGGCCAGGCGCTCACCGTCATCTGCTCTG aacaagtcacattgatcacagcacgtttcctccttccatgtctcctgcagCTCCTCCTCAAGTGCAATTAGTGCCAGGGCATGAGGACCTGAGGTGTACTGGTGTGGTGGAGTTCTACAATGACAGTTGGGAAGGAGGCACCATCCGCTACAAGGCCAAGGACAGGCCCCTGAGACTTGGTAAGCTCATCTGTAAGTCTCTGCAATGTGGCACATTCCTGACACACCTATCTGGGACGGAGCCCCCGAGAACCCCAGCTCCAGCAGACCTGAGGGTCCCCAGGCCTTTACCAGTGCAGTGGGAGGCCCCAAATGGAAGCTGTCTCTCACTGCATCAGTGTTTCCAGAAAACGACCGCCCAGGAGGGTAGCCAGGCTTTAACAGTCATCTGTTCTGgtaagtagatgtggaccatgccctattagagttaccctataagagctttt Alignment from Spaln_nt2Genome CTCCTCCCAGATTGCAGCTGGTGCCAGGACACGAAGGCCTGAGGTGCACAGGTGTGGTGGAATTCTACAATGGCAGCTGGG---GTGGCACCATCCTCTACAAGGCCAAGGACAGGCCCCTGGGCCTGGGGAACCTCATCTGTAAGTCTCTGCAGTGTGGCTCTTTCTTGACACATCTGTCCGGGACAGAGGCAGCAGGGACACCAGCTCCTGCAGAGCTGAGGGACCCCAGGCCCTTGCCAATTCGATGGGAGGCCCCGAACGGGAGCTGTGTCTCACTACAGCAGTGCTTCCAGAAAACAACGGCCCAGGAGGGCGGCCAGGCGCTCACCGTCATCTGCTCTG aacaagtcacattgatcacagcacgtttcctccttccatgtctcctgcagCTCCTCCTCAAGTGCAATTAGTGCCAGGGCATGAGGACCTGAGGTGTACTGGTGTGGTGGAGTTCTACAATGACAGTTGGGAAGGAGGCACCATCCGCTACAAGGCCAAGGACAGGCCCCTGAGACTTGGTAAGCTCATCTGTAAGTCTCTGCAATGTGGCACATTCCTGACACACCTATCTGGGACGGAGCCCCCGAGAACCCCAGCTCCAGCAGACCTGAGGGTCCCCAGGCCTTTACCAGTGCAGTGGGAGGCCCCAAATGGAAGCTGTCTCTCACTGCATCAGTGTTTCCAGAAAACGACCGCCCAGGAGGGTAGCCAGGCTTTAACAGTCATCTGTTCTGgtaagtagatgtggaccatgccctattagagttaccctataagagctttt Alignment from Pairagon CTCCTCCCAGATTGCAGCTGGTGCCAGGACACGAAGGCCTGAGGTGCACAGGTGTGGTGGAATTCTACAATGGCAGCTGG---GGTGGCACCATCCTCTACAAGGCCAAGGACAGGCCCCTGGGCCTGGGGAACCTCATCTGTAAGTCTCTGCAGTGTGGCTCTTTCTTGACACATCTGTCCGGGACAGAGGCAGCAGGGACACCAGCTCCTGCAGAGCTGAGGGACCCCAGGCCCTTGCCAATTCGATGGGAGGCCCCGAACGGGAGCTGTGTCTCACTACAGCAGTGCTTCCAGAAAACAACGGCCCAGGAGGGCGGCCAGGCGCTCACCGTCATCTGCTCTG aacaagtcacattgatcacagcacgtttcctccttccatgtctcctgcagCTCCTCCTCAAGTGCAATTAGTGCCAGGGCATGAGGACCTGAGGTGTACTGGTGTGGTGGAGTTCTACAATGACAGTTGGGAAGGAGGCACCATCCGCTACAAGGCCAAGGACAGGCCCCTGAGACTTGGTAAGCTCATCTGTAAGTCTCTGCAATGTGGCACATTCCTGACACACCTATCTGGGACGGAGCCCCCGAGAACCCCAGCTCCAGCAGACCTGAGGGTCCCCAGGCCTTTACCAGTGCAGTGGGAGGCCCCAAATGGAAGCTGTCTCTCACTGCATCAGTGTTTCCAGAAAACGACCGCCCAGGAGGGTAGCCAGGCTTTAACAGTCATCTGTTCTGgtaagtagatgtggaccatgccctattagagttaccctataagagctttt Alignment from Exonerate_protein2genome CTCCTCCCAGATTGCAGCTGGTGCCAGGACACGAAGGCCTGAGGTGCACAGGTGTGGTGGAATTCTACAATGGCAGCTGG---GGTGGCACCATCCTCTACAAGGCCAAGGACAGGCCCCTGGGCCTGGGGAACCTCATCTGTAAGTCTCTGCAGTGTGGCTCTTTCTTGACACATCTGTCCGGGACAGAGGCAGCAGGGACACCAGCTCCTGCAGAGCTGAGGGACCCCAGGCCCTTGCCAATTCGATGGGAGGCCCCGAACGGGAGCTGTGTCTCACTACAGCAGTGCTTCCAGAAAACAACGGCCCAGGAGGGCGGCCAGGCGCTCACCGTCATCTGCTCTG aacaagtcacattgatcacagcacgtttcctccttccatgtctcctgcagCTCCTCCTCAAGTGCAATTAGTGCCAGGGCATGAGGACCTGAGGTGTACTGGTGTGGTGGAGTTCTACAATGACAGTTGGGAAGGAGGCACCATCCGCTACAAGGCCAAGGACAGGCCCCTGAGACTTGGTAAGCTCATCTGTAAGTCTCTGCAATGTGGCACATTCCTGACACACCTATCTGGGACGGAGCCCCCGAGAACCCCAGCTCCAGCAGACCTGAGGGTCCCCAGGCCTTTACCAGTGCAGTGGGAGGCCCCAAATGGAAGCTGTCTCTCACTGCATCAGTGTTTCCAGAAAACGACCGCCCAGGAGGGTAGCCAGGCTTTAACAGTCATCTGTTCTGgtaagtagatgtggaccatgccctattagagttaccctataagagctttt Alignment from Exonerate_coding2genome CTCCTCCCAGATTGCAGCTGGTGCCAGGACACGAAGGCCTGAGGTGCACAGGTGTGGTGGAATTCTACAATGGCAGCTGG---GGTGGCACCATCCTCTACAAGGCCAAGGACAGGCCCCTGGGCCTGGGGAACCTCATCTGTAAGTCTCTGCAGTGTGGCTCTTTCTTGACACATCTGTCCGGGACAGAGGCAGCAGGGACACCAGCTCCTGCAGAGCTGAGGGACCCCAGGCCCTTGCCAATTCGATGGGAGGCCCCGAACGGGAGCTGTGTCTCACTACAGCAGTGCTTCCAGAAAACAACGGCCCAGGAGGGCGGCCAGGCGCTCACCGTCATCTGCTCTG aacaagtcacattgatcacagcacgtttcctccttccatgtctcctgcagCTCCTCCTCAAGTGCAATTAGTGCCAGGGCATGAGGACCTGAGGTGTACTGGTGTGGTGGAGTTCTACAATGACAGTTGGGAAGGAGGCACCATCCGCTACAAGGCCAAGGACAGGCCCCTGAGACTTGGTAAGCTCATCTGTAAGTCTCTGCAATGTGGCACATTCCTGACACACCTATCTGGGACGGAGCCCCCGAGAACCCCAGCTCCAGCAGACCTGAGGGTCCCCAGGCCTTTACCAGTGCAGTGGGAGGCCCCAAATGGAAGCTGTCTCTCACTGCATCAGTGTTTCCAGAAAACGACCGCCCAGGAGGGTAGCCAGGCTTTAACAGTCATCTGTTCTGgtaagtagatgtggaccatgccctattagagttaccctataagagctttt Alignment from GeneWise CTCCTCCCAGATTGCAGCTGGTGCCAGGACACGAAGGCCTGAGGTGCACAGGTGTGGTGGAATTCTACAATGGCAGCTGG---GGTGGCACCATCCTCTACAAGGCCAAGGACAGGCCCCTGGGCCTGGGGAACCTCATCTGTAAGTCTCTGCAGTGTGGCTCTTTCTTGACACATCTGTCCGGGACAGAGGCAGCAGGGACACCAGCTCCTGCAGAGCTGAGGGACCCCAGGCCCTTGCCAATTCGATGGGAGGCCCCGAACGGGAGCTGTGTCTCACTACAGCAGTGCTTCCAGAAAACAACGGCCCAGGAGGGCGGCCAGGCGCTCACCGTCATCTGCTCTG aacaagtcacattgatcacagcacgtttcctccttccatgtctcctgcagCTCCTCCTCAAGTGCAATTAGTGCCAGGGCATGAGGACCTGAGGTGTACTGGTGTGGTGGAGTTCTACAATGACAGTTGGGAAGGAGGCACCATCCGCTACAAGGCCAAGGACAGGCCCCTGAGACTTGGTAAGCTCATCTGTAAGTCTCTGCAATGTGGCACATTCCTGACACACCTATCTGGGACGGAGCCCCCGAGAACCCCAGCTCCAGCAGACCTGAGGGTCCCCAGGCCTTTACCAGTGCAGTGGGAGGCCCCAAATGGAAGCTGTCTCTCACTGCATCAGTGTTTCCAGAAAACGACCGCCCAGGAGGGTAGCCAGGCTTTAACAGTCATCTGTTCTGgtaagtagatgtggaccatgccctattagagttaccctataagagctttt #### Cd5_ID2994_4 --> 2 - 1 Original Alignment GAGCCTGATCTGCCTAg agCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAg GAGCCTGAGCTGCCTAggtaagtgacaggtttgttttctgtgtgttccagaaCCCCAGAGAACAGCTCCTCCACCCACAACTGCTCCATCCACCACTGTACCGGAACCCACAggtaggctgatgcacaacaggaaaacaaagtagagaattatgttgatataa Alignment from CESAR GAGCCTGATCTGCCTAg agCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAg GAGCCTGAGCTGCCTAggtgagggacaggtttgttttctgtgtgttccagaaCCCCAGAGAACAGCTCCTCCACCCACAACTGCTCCATCCACCACTGTACCGGAACCCACAggtaggctgatgcacaacaggaaaacaaagtagagaattatgttgatataa Alignment from Spaln_aa2Genome GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG GAGCCTGAGCTGCCTAGgtaagtgacaggtttgttttctgtgtgttccagAACCCCAGAGAACAGCTCCTCCACCCACAACTGCTCCATCCACCACTGTACCGGAACCCACAGgtaggctgatgcacaacaggaaaacaaagtagagaattatgttgatataa Alignment from Spaln_nt2Genome GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG GAGCCTGAGCTGCCTAGgtaagtgacaggtttgttttctgtgtgttccagAACCCCAGAGAACAGCTCCTCCACCCACAACTGCTCCATCCACCACTGTACCGGAACCCACAGgtaggctgatgcacaacaggaaaacaaagtagagaattatgttgatataa Alignment from Pairagon GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG GAGCCTGAGCTGCCTAGgtaagtgacaggtttgttttctgtgtgttccagAACCCCAGAGAACAGCTCCTCCACCCACAACTGCTCCATCCACCACTGTACCGGAACCCACAGgtaggctgatgcacaacaggaaaacaaagtagagaattatgttgatataa Alignment from Exonerate_protein2genome GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG GAGCCTGAGCTGCCTAGgtaagtgacaggtttgttttctgtgtgttccagAACCCCAGAGAACAGCTCCTCCACCCACAACTGCTCCATCCACCACTGTACCGGAACCCACAGgtaggctgatgcacaacaggaaaacaaagtagagaattatgttgatataa Alignment from Exonerate_coding2genome GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG GAGCCTGAGCTGCCTAGgtaagtgacaggtttgttttctgtgtgttccagAACCCCAGAGAACAGCTCCTCCACCCACAACTGCTCCATCCACCACTGTACCGGAACCCACAGgtaggctgatgcacaacaggaaaacaaagtagagaattatgttgatataa Alignment from GeneWise GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG GAGCCTGAGCTGCCTAGgtaagtgacaggtttgttttctgtgtgttccagAACCCCAGAGAACAGCTCCTCCACCCACAACTGCTCCATCCACCACTGTACCGGAACCCACAGgtaggctgatgcacaacaggaaaacaaagtagagaattatgttgatataa #### Cd6_ID3016_8 --> 2 - 1 Original Alignment ccCTCCCTGCTTCAGTGAACCACCAGCAACTGTCTACTGCCAACCAAGCAGGGATCAATAACTACCATCCTGTCCCTATCACCATTGCCAAAGAAg aggattaagatcctaaaagactcaagtgcctttttttcccctgtctaaagctGTCCTGGCTTCTGTGAACCACCAGCAGCTCGCAACTGCGAACCAGGCAGGAATCAATAACTACCATCCTGCCCCCATCAGCATTGCCAAAGATggtaagtacgcatacaagatgtgtagtagacaaaacatggtgattgtaggt Alignment from CESAR ccCTCCCTGCTTCAGTGAACCACCAGCAACTGTCTACTGCCAACCAAGCAGGGATCAATAACTACCATCCTGTCCCTATCACCATTGCCAAAGAAg aggattaagatcctaaaagactcaagtgcctttttttcccctgtctaaagctGTCCTGGCTTCTGTGAACCACCAGCAGCTCGCAACTGCGAACCAGGCAGGAATCAATAACTACCATCCTGCCCCCATCAGCATTGCCAAAGATggtaagtacgcatacaagatgtgtagtagacaaaacatggtgattgtaggt Alignment from Spaln_aa2Genome CCCTCCCTGCTTCAGTGAACCACCAGCAACTGTCTACTGCCAACCAAGCAGGGATCAATAACTACCATCCTGTCCCTATCACCATTGCCAAAGAAG aggattaagatcctaaaagactcaagtgcctttttttcccctgtctaaagCTGTCCTGGCTTCTGTGAACCACCAGCAGCTCGCAACTGCGAACCAGGCAGGAATCAATAACTACCATCCTGCCCCCATCAGCATTGCCAAAGATGgtaagtacgcatacaagatgtgtagtagacaaaacatggtgattgtaggt Alignment from Spaln_nt2Genome CCCTCCCTGCTTCAGTGAACCACCAGCAACTGTCTACTGCCAACCAAGCAGGGATCAATAACTACCATCCTGTCCCTATCACCATTGCCAAAGAAG aggattaagatcctaaaagactcaagtgcctttttttcccctgtctaaagCTGTCCTGGCTTCTGTGAACCACCAGCAGCTCGCAACTGCGAACCAGGCAGGAATCAATAACTACCATCCTGCCCCCATCAGCATTGCCAAAGATGgtaagtacgcatacaagatgtgtagtagacaaaacatggtgattgtaggt Alignment from Pairagon CCCTCCCTGCTTCAGTGAACCACCAGCAACTGTCTACTGCCAACCAAGCAGGGATCAATAACTACCATCCTGTCCCTATCACCATTGCCAAAGAAG aggattaagatcctaaaagactcaagtgcctttttttcccctgtctaaagCTGTCCTGGCTTCTGTGAACCACCAGCAGCTCGCAACTGCGAACCAGGCAGGAATCAATAACTACCATCCTGCCCCCATCAGCATTGCCAAAGATGgtaagtacgcatacaagatgtgtagtagacaaaacatggtgattgtaggt Alignment from Exonerate_protein2genome CCCTCCCTGCTTCAGTGAACCACCAGCAACTGTCTACTGCCAACCAAGCAGGGATCAATAACTACCATCCTGTCCCTATCACCATTGCCAAAGAAG aggattaagatcctaaaagactcaagtgcctttttttcccctgtctaaagCTGTCCTGGCTTCTGTGAACCACCAGCAGCTCGCAACTGCGAACCAGGCAGGAATCAATAACTACCATCCTGCCCCCATCAGCATTGCCAAAGATGgtaagtacgcatacaagatgtgtagtagacaaaacatggtgattgtaggt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCCTCCCTGCTTCAGTGAACCACCAGCAACTGTCTACTGCCAACCAAGCAGGGATCAATAACTACCATCCTGTCCCTATCACCATTGCCAAAGAAG aggattaagatcctaaaagactcaagtgcctttttttcccctgtctaaagCTGTCCTGGCTTCTGTGAACCACCAGCAGCTCGCAACTGCGAACCAGGCAGGAATCAATAACTACCATCCTGCCCCCATCAGCATTGCCAAAGATGgtaagtacgcatacaagatgtgtagtagacaaaacatggtgattgtaggt #### Cd6_ID3020_4 --> 2 - 1 Original Alignment agAACCAAGCAGTGCGGTTAGTGGATGGTAGCAGCCGCTGTGCTGGCCGAGTGGAGATGCTGGAGCATGGTGAATGGGGTACCGTGTGCGACGACACGTGGGACCTGCAGGATGCACACGTAGTGTGTAAGCAACTGAAGTGCGGCTGGGCAGTGAAGGCGCTGGCCGGCTTGCACTTCACCCCAGGCCAAGGACCCATCCACCGCGATCAGGTGAACTGCTCTGGGACTGAGGCTTACCTGTGGGACTGCCCGGGACGGCCAGGAGACCAGTACTGTGGTCACAAGGAGGACGCAGGAGTGGTGTGCTCAg tgcagccttctccaaaatgtccacccctaccccctctgatttcctcacagagAATCAATCAGTGTGGCTAGCAGATGGTAGCAGCCGCTGTGCCGGGTGCGTAGAAACGCTGGAGCATGGTGAATGGGGTACTGTT---GATGACACATGGGGCCTTCAGGATGCACATGTGGTATGTAAACAATTGAAGTGTGGTTGGGCAGTGAAAGCTCAAGCTGGCTTGCACTTCACCTCAGGCCAGGGACCAATCCATCAAGATCAAGTGAATTGCTCTGGAACTGAGGCTTACCTGTGGGACTGTCCAGGATGGCTAGGAGACCAGTACTGCGGTCATAAGGAGGACACAGGCGTGGTGTGCCCTggtaaagcagcatatagggcaatatcaagttaagcagttcggatttgatac Alignment from CESAR agAACCAAGCAGTGCGGTTAGTGGATGGTAGCAGCCGCTGTGCTGGCCGAGTGGAGATGCTGGAGCATGGTGAATGGGGTACCGTGTGCGACGACACGTGGGACCTGCAGGATGCACACGTAGTGTGTAAGCAACTGAAGTGCGGCTGGGCAGTGAAGGCGCTGGCCGGCTTGCACTTCACCCCAGGCCAAGGACCCATCCACCGCGATCAGGTGAACTGCTCTGGGACTGAGGCTTACCTGTGGGACTGCCCGGGACGGCCAGGAGACCAGTACTGTGGTCACAAGGAGGACGCAGGAGTGGTGTGCTCAg tgcagccttctccaaaatgtccacccctaccccctctgatttcctcacagagAATCAATCAGTGTGGCTAGCAGATGGTAGCAGCCGCTGTGCCGGGTGCGTAGAAACGCTGGAGCATGGTGAATGGGGTACTGTT---GATGACACATGGGGCCTTCAGGATGCACATGTGGTATGTAAACAATTGAAGTGTGGTTGGGCAGTGAAAGCTCAAGCTGGCTTGCACTTCACCTCAGGCCAGGGACCAATCCATCAAGATCAAGTGAATTGCTCTGGAACTGAGGCTTACCTGTGGGACTGTCCAGGATGGCTAGGAGACCAGTACTGCGGTCATAAGGAGGACACAGGCGTGGTGTGCCCTggtaaagcagcatatagggcaatatcaagttaagcagttcggatttgatac Alignment from Spaln_aa2Genome AGAACCAAGCAGTGCGGTTAGTGGATGGTAGCAGCCGCTGTGCTGGCCGAGTGGAGATGCTGGAGCATGGTGAATGGGGTACCGTGTGCGACGACACGTGGGACCTGCAGGATGCACACGTAGTGTGTAAGCAACTGAAGTGCGGCTGGGCAGTGAAGGCGCTGGCCGGCTTGCACTTCACCCCAGGCCAAGGACCCATCCACCGCGATCAGGTGAACTGCTCTGGGACTGAGGCTTACCTGTGGGACTGCCCGGGACGGCCAGGAGACCAGTACTGTGGTCACAAGGAGGACGCAGGAGTGGTGTGCTCAG tgcagccttctccaaaatgtccacccctaccccctctgatttcctcacagAGAATCAATCAGTGTGGCTAGCAGATGGTAGCAGCCGCTGTGCCGGGTGCGTAGAAACGCTGGAGCATGGTGAATGGGGTACTGTTGAT---GACACATGGGGCCTTCAGGATGCACATGTGGTATGTAAACAATTGAAGTGTGGTTGGGCAGTGAAAGCTCAAGCTGGCTTGCACTTCACCTCAGGCCAGGGACCAATCCATCAAGATCAAGTGAATTGCTCTGGAACTGAGGCTTACCTGTGGGACTGTCCAGGATGGCTAGGAGACCAGTACTGCGGTCATAAGGAGGACACAGGCGTGGTGTGCCCTGgtaaagcagcatatagggcaatatcaagttaagcagttcggatttgatac Alignment from Spaln_nt2Genome AGAACCAAGCAGTGCGGTTAGTGGATGGTAGCAGCCGCTGTGCTGGCCGAGTGGAGATGCTGGAGCATGGTGAATGGGGTACCGTGTGCGACGACACGTGGGACCTGCAGGATGCACACGTAGTGTGTAAGCAACTGAAGTGCGGCTGGGCAGTGAAGGCGCTGGCCGGCTTGCACTTCACCCCAGGCCAAGGACCCATCCACCGCGATCAGGTGAACTGCTCTGGGACTGAGGCTTACCTGTGGGACTGCCCGGGACGGCCAGGAGACCAGTACTGTGGTCACAAGGAGGACGCAGGAGTGGTGTGCTCAG tgcagccttctccaaaatgtccacccctaccccctctgatttcctcacagAGAATCAATCAGTGTGGCTAGCAGATGGTAGCAGCCGCTGTGCCGGGTGCGTAGAAACGCTGGAGCATGGTGAATGGGGTACTGT---TGATGACACATGGGGCCTTCAGGATGCACATGTGGTATGTAAACAATTGAAGTGTGGTTGGGCAGTGAAAGCTCAAGCTGGCTTGCACTTCACCTCAGGCCAGGGACCAATCCATCAAGATCAAGTGAATTGCTCTGGAACTGAGGCTTACCTGTGGGACTGTCCAGGATGGCTAGGAGACCAGTACTGCGGTCATAAGGAGGACACAGGCGTGGTGTGCCCTGgtaaagcagcatatagggcaatatcaagttaagcagttcggatttgatac Alignment from Pairagon AGAACCAAGCAGTGCGGTTAGTGGATGGTAGCAGCCGCTGTGCTGGCCGAGTGGAGATGCTGGAGCATGGTGAATGGGGTACCGTGTGCGACGACACGTGGGACCTGCAGGATGCACACGTAGTGTGTAAGCAACTGAAGTGCGGCTGGGCAGTGAAGGCGCTGGCCGGCTTGCACTTCACCCCAGGCCAAGGACCCATCCACCGCGATCAGGTGAACTGCTCTGGGACTGAGGCTTACCTGTGGGACTGCCCGGGACGGCCAGGAGACCAGTACTGTGGTCACAAGGAGGACGCAGGAGTGGTGTGCTCAG tgcagccttctccaaaatgtccacccctaccccctctgatttcctcacagAGAATCAATCAGTGTGGCTAGCAGATGGTAGCAGCCGCTGTGCCGGGTGCGTAGAAACGCTGGAGCATGGTGAATGGGGTACTGT---TGATGACACATGGGGCCTTCAGGATGCACATGTGGTATGTAAACAATTGAAGTGTGGTTGGGCAGTGAAAGCTCAAGCTGGCTTGCACTTCACCTCAGGCCAGGGACCAATCCATCAAGATCAAGTGAATTGCTCTGGAACTGAGGCTTACCTGTGGGACTGTCCAGGATGGCTAGGAGACCAGTACTGCGGTCATAAGGAGGACACAGGCGTGGTGTGCCCTGgtaaagcagcatatagggcaatatcaagttaagcagttcggatttgatac Alignment from Exonerate_protein2genome AGAACCAAGCAGTGCGGTTAGTGGATGGTAGCAGCCGCTGTGCTGGCCGAGTGGAGATGCTGGAGCATGGTGAATGGGGTACCGTGTGCGACGACACGTGGGACCTGCAGGATGCACACGTAGTGTGTAAGCAACTGAAGTGCGGCTGGGCAGTGAAGGCGCTGGCCGGCTTGCACTTCACCCCAGGCCAAGGACCCATCCACCGCGATCAGGTGAACTGCTCTGGGACTGAGGCTTACCTGTGGGACTGCCCGGGACGGCCAGGAGACCAGTACTGTGGTCACAAGGAGGACGCAGGAGTGGTGTGCTCAG tgcagccttctccaaaatgtccacccctaccccctctgatttcctcacagAGAATCAATCAGTGTGGCTAGCAGATGGTAGCAGCCGCTGTGCCGGGTGCGTAGAAACGCTGGAGCATGGTGAATGGGGTACTGTT---GATGACACATGGGGCCTTCAGGATGCACATGTGGTATGTAAACAATTGAAGTGTGGTTGGGCAGTGAAAGCTCAAGCTGGCTTGCACTTCACCTCAGGCCAGGGACCAATCCATCAAGATCAAGTGAATTGCTCTGGAACTGAGGCTTACCTGTGGGACTGTCCAGGATGGCTAGGAGACCAGTACTGCGGTCATAAGGAGGACACAGGCGTGGTGTGCCCTGgtaaagcagcatatagggcaatatcaagttaagcagttcggatttgatac Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AGAACCAAGCAGTGCGGTTAGTGGATGGTAGCAGCCGCTGTGCTGGCCGAGTGGAGATGCTGGAGCATGGTGAATGGGGTACCGTGTGCGACGACACGTGGGACCTGCAGGATGCACACGTAGTGTGTAAGCAACTGAAGTGCGGCTGGGCAGTGAAGGCGCTGGCCGGCTTGCACTTCACCCCAGGCCAAGGACCCATCCACCGCGATCAGGTGAACTGCTCTGGGACTGAGGCTTACCTGTGGGACTGCCCGGGACGGCCAGGAGACCAGTACTGTGGTCACAAGGAGGACGCAGGAGTGGTGTGCTCAG tgcagccttctccaaaatgtccacccctaccccctctgatttcctcacagAGAATCAATCAGTGTGGCTAGCAGATGGTAGCAGCCGCTGTGCCGGGTGCGTAGAAACGCTGGAGCATGGTGAATGGGGTACTGTT---GATGACACATGGGGCCTTCAGGATGCACATGTGGTATGTAAACAATTGAAGTGTGGTTGGGCAGTGAAAGCTCAAGCTGGCTTGCACTTCACCTCAGGCCAGGGACCAATCCATCAAGATCAAGTGAATTGCTCTGGAACTGAGGCTTACCTGTGGGACTGTCCAGGATGGCTAGGAGACCAGTACTGCGGTCATAAGGAGGACACAGGCGTGGTGTGCCCTGgtaaagcagcatatagggcaatatcaagttaagcagttcggatttgatac #### Cdc37l1_ID6197_4 --> 2 - 0 Original Alignment gtATGTTGAGTCGCTGGGATGACAGTCAGAGGTTTTTGTCTGACCACCCACACCTCGTATGTGAAGAGACTGCTAAATATCTTATTTTATGGTGTTTCCACCTAGAAGCTGAGCAG tcagtatatggcctccagaataattgtatttctgtctttctccccgataggcATGTTAAGTTGTTGGGATGAGAGTCAAAGGTTTTTGTCTGACCACCCACACCTCATATGTGAAGAGACTGCGAAATATCTTGTCTTATGGTGTTTCCACCTAGAAGCCGAGCAGgtaagtgtacaaaactgaacatctccctgagtggaacttcttgcccttta Alignment from CESAR gtATGTTGAGTCGCTGGGATGACAGTCAGAGGTTTTTGTCTGACCACCCACACCTCGTATGTGAAGAGACTGCTAAATATCTTATTTTATGGTGTTTCCACCTAGAAGCTGAGCAG tcagtatatggcctccagaataattgtatttctgtctttctccccgataggcATGTTAAGTTGTTGGGATGAGAGTCAAAGGTTTTTGTCTGACCACCCACACCTCATATGTGAAGAGACTGCGAAATATCTTGTCTTATGGTGTTTCCACCTAGAAGCCGAGCAGgtaagtgtacaaaactgaacatctccctgagtggaacttcttgcccttta Alignment from Spaln_aa2Genome GTATGTTGAGTCGCTGGGATGACAGTCAGAGGTTTTTGTCTGACCACCCACACCTCGTATGTGAAGAGACTGCTAAATATCTTATTTTATGGTGTTTCCACCTAGAAGCTGAGCAG tcagtatatggcctccagaataattgtatttctgtctttctccccgatagGCATGTTAAGTTGTTGGGATGAGAGTCAAAGGTTTTTGTCTGACCACCCACACCTCATATGTGAAGAGACTGCGAAATATCTTGTCTTATGGTGTTTCCACCTAGAAGCCGAGCAGgtaagtgtacaaaactgaacatctccctgagtggaacttcttgcccttta Alignment from Spaln_nt2Genome GTATGTTGAGTCGCTGGGATGACAGTCAGAGGTTTTTGTCTGACCACCCACACCTCGTATGTGAAGAGACTGCTAAATATCTTATTTTATGGTGTTTCCACCTAGAAGCTGAGCAG tcagtatatggcctccagaataattgtatttctgtctttctccccgatagGCATGTTAAGTTGTTGGGATGAGAGTCAAAGGTTTTTGTCTGACCACCCACACCTCATATGTGAAGAGACTGCGAAATATCTTGTCTTATGGTGTTTCCACCTAGAAGCCGAGCAGgtaagtgtacaaaactgaacatctccctgagtggaacttcttgcccttta Alignment from Pairagon GTATGTTGAGTCGCTGGGATGACAGTCAGAGGTTTTTGTCTGACCACCCACACCTCGTATGTGAAGAGACTGCTAAATATCTTATTTTATGGTGTTTCCACCTAGAAGCTGAGCAG tcagtatatggcctccagaataattgtatttctgtctttctccccgatagGCATGTTAAGTTGTTGGGATGAGAGTCAAAGGTTTTTGTCTGACCACCCACACCTCATATGTGAAGAGACTGCGAAATATCTTGTCTTATGGTGTTTCCACCTAGAAGCCGAGCAGgtaagtgtacaaaactgaacatctccctgagtggaacttcttgcccttta Alignment from Exonerate_protein2genome GTATGTTGAGTCGCTGGGATGACAGTCAGAGGTTTTTGTCTGACCACCCACACCTCGTATGTGAAGAGACTGCTAAATATCTTATTTTATGGTGTTTCCACCTAGAAGCTGAGCAG tcagtatatggcctccagaataattgtatttctgtctttctccccgatagGCATGTTAAGTTGTTGGGATGAGAGTCAAAGGTTTTTGTCTGACCACCCACACCTCATATGTGAAGAGACTGCGAAATATCTTGTCTTATGGTGTTTCCACCTAGAAGCCGAGCAGgtaagtgtacaaaactgaacatctccctgagtggaacttcttgcccttta Alignment from Exonerate_coding2genome GTATGTTGAGTCGCTGGGATGACAGTCAGAGGTTTTTGTCTGACCACCCACACCTCGTATGTGAAGAGACTGCTAAATATCTTATTTTATGGTGTTTCCACCTAGAAGCTGAGCAG tcagtatatggcctccagaataattgtatttctgtctttctccccgatagGCATGTTAAGTTGTTGGGATGAGAGTCAAAGGTTTTTGTCTGACCACCCACACCTCATATGTGAAGAGACTGCGAAATATCTTGTCTTATGGTGTTTCCACCTAGAAGCCGAGCAGgtaagtgtacaaaactgaacatctccctgagtggaacttcttgcccttta Alignment from GeneWise GTATGTTGAGTCGCTGGGATGACAGTCAGAGGTTTTTGTCTGACCACCCACACCTCGTATGTGAAGAGACTGCTAAATATCTTATTTTATGGTGTTTCCACCTAGAAGCTGAGCAG tcagtatatggcctccagaataattgtatttctgtctttctccccgatagGCATGTTAAGTTGTTGGGATGAGAGTCAAAGGTTTTTGTCTGACCACCCACACCTCATATGTGAAGAGACTGCGAAATATCTTGTCTTATGGTGTTTCCACCTAGAAGCCGAGCAGgtaagtgtacaaaactgaacatctccctgagtggaacttcttgcccttta #### Cdc42bpg_ID1572_2 --> 2 - 0 Original Alignment ccAGCCCCTTTGTAACAAAAGTGAAAGAGCTGCGTCTACAGAGAGATGACTTTGAGATCTTGAAGGTGATTGGCAGAGGGGCCTTTGGGGAG cgctatgaaatatagaaaagaatggttaagacctcttgtcaatcttatagccAGTCCTTTTGTAACAAAGGTGAAGGAGTTGTGTATACAGAGAGAT---GTTGAGATCCTGAAAATTATTGGCAGAGGTACCTATGGACAAgtaagtaagctctcttaaagtgaggagtattgatccttctgtgagtccag Alignment from CESAR ccAGCCCCTTTGTAACAAAAGTGAAAGAGCTGCGTCTACAGAGAGATGACTTTGAGATCTTGAAGGTGATTGGCAGAGGGGCCTTTGGGGAG cgctatgaaatatagaaaagaatggttaagacctcttgtcaatcttatagccAGTCCTTTTGTAACAAAGGTGAAGGAGTTGTGTATACAGAGAGAT---GTTGAGATCCTGAAAATTATTGGCAGAGGTACCTATGGACAAgtaagtaagctctcttaaagtgaggagtattgatccttctgtgagtccag Alignment from Spaln_aa2Genome CCAGCCCCTTTGTAACAAAAGTGAAAGAGCTGCGTCTACAGAGAGATGACTTTGAGATCTTGAAGGTGATTGGCAGAGGGGCCTTTGGGGAG cgctatgaaatatagaaaagaatggttaagacctcttgtcaatcttatagCCAGTCCTTTTGTAACAAAGGTGAAGGAGTTGTGTATACAGAGA---GATGTTGAGATCCTGAAAATTATTGGCAGAGGTACCTATGGACAAgtaagtaagctctcttaaagtgaggagtattgatccttctgtgagtccag Alignment from Spaln_nt2Genome CCAGCCCCTTTGTAACAAAAGTGAAAGAGCTGCGTCTACAGAGAGATGACTTTGAGATCTTGAAGGTGATTGGCAGAGGGGCCTTTGGGGAG cgctatgaaatatagaaaagaatggttaagacctcttgtcaatcttatagCCAGTCCTTTTGTAACAAAGGTGAAGGAGTTGTGTATACAGAGAGATG---TTGAGATCCTGAAAATTATTGGCAGAGGTACCTATGGACAAgtaagtaagctctcttaaagtgaggagtattgatccttctgtgagtccag Alignment from Pairagon CCAGCCCCTTTGTAACAAAAGTGAAAGAGCTGCGTCTACAGAGAGATGACTTTGAGATCTTGAAGGTGATTGGCAGAGGGGCCTTTGGGGAG cgctatgaaatatagaaaagaatggttaagacctcttgtcaatcttatagCCAGTCCTTTTGTAACAAAGGTGAAGGAGTTGTGTATACAGAGAGATG---TTGAGATCCTGAAAATTATTGGCAGAGGTACCTATGGACAAgtaagtaagctctcttaaagtgaggagtattgatccttctgtgagtccag Alignment from Exonerate_protein2genome CCAGCCCCTTTGTAACAAAAGTGAAAGAGCTGCGTCTACAGAGAGATGACTTTGAGATCTTGAAGGTGATTGGCAGAGGGGCCTTTGGGGAG cgctatgaaatatagaaaagaatggttaagacctcttgtcaatcttatagCCAGTCCTTTTGTAACAAAGGTGAAGGAGTTGTGTATACAGAGA---GATGTTGAGATCCTGAAAATTATTGGCAGAGGTACCTATGGACAAgtaagtaagctctcttaaagtgaggagtattgatccttctgtgagtccag Alignment from Exonerate_coding2genome CCAGCCCCTTTGTAACAAAAGTGAAAGAGCTGCGTCTACAGAGAGATGACTTTGAGATCTTGAAGGTGATTGGCAGAGGGGCCTTTGGGGAG cgctatgaaatatagaaaagaatggttaagacctcttgtcaatcttatagCCAGTCCTTTTGTAACAAAGGTGAAGGAGTTGTGTATACAGAGA---GATGTTGAGATCCTGAAAATTATTGGCAGAGGTACCTATGGACAAgtaagtaagctctcttaaagtgaggagtattgatccttctgtgagtccag Alignment from GeneWise CCAGCCCCTTTGTAACAAAAGTGAAAGAGCTGCGTCTACAGAGAGATGACTTTGAGATCTTGAAGGTGATTGGCAGAGGGGCCTTTGGGGAG cgctatgaaatatagaaaagaatggttaagacctcttgtcaatcttatagCCAGTCCTTTTGTAACAAAGGTGAAGGAGTTGTGTATACAGAGA---GATGTTGAGATCCTGAAAATTATTGGCAGAGGTACCTATGGACAAgtaagtaagctctcttaaagtgaggagtattgatccttctgtgagtccag #### Cdc42bpg_ID1576_6 --> 1 - 0 Original Alignment gGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG ggacacacacatacttacaccaaagaactagcttggaatcttcctggtagaGATGTGGAGCCAGACAATGTTCTA---AGCATGAATGGGCAT---TGCTTGGCTGACTTTGGCACCTGCCTATGCCTCAACATCAATGCCAAGgtgtgaaaaccacctagaaattcgtagataagtataaagacatttagttg Alignment from CESAR gGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG ggacacacacatacttacaccaaagaactagcttggaatcttcctggtagaGATGTGGAGCCAGACAATGTT---CTAAGCATGAATGGGCAT---TGCTTGGCTGACTTTGGCACCTGCCTATGCCTCAACATCAATGCCAAGgtgtgaaaaccacctagaaattcgtagataagtataaagacatttagttg Alignment from Spaln_aa2Genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG ggacacacacatacttacaccaaagaactagcttggaatcttcctggtagAGATGTGGAGCCAGACAATGTT---CTAAGCATGAATGGGCAT---TGCTTGGCTGACTTTGGCACCTGCCTATGCCTCAACATCAATGCCAAGgtgtgaaaaccacctagaaattcgtagataagtataaagacatttagttg Alignment from Spaln_nt2Genome CATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG ggacacacacatacttacaccaaagaactagcttggaatcttcctggtagagatgtggagccagacaatgttctaagCATGAATGGGCA---TTGCTTGGCTGACTTTGGCACCTGCCTATGCCTCAACATCAATGCCAAGgtgtgaaaaccacctagaaattcgtagataagtataaagacatttagttg Alignment from Pairagon GGATGTGAAGCCTGACAA-------------------CATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG ggacacacacatacttacaccaaagaactagcttggaatcttcctggtagAGATGTGGAGCCAGACAATGTTCTAAGCATGAATGGGCAT-------------------------TGCTTGGCTGACTTTGGCACCTGCCTATGCCTCAACATCAATGCCAAGgtgtgaaaaccacctagaaattcgtagataagtataaagacatttagttg Alignment from Exonerate_protein2genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG ggacacacacatacttacaccaaagaactagcttggaatcttcctggtagAGATGTGGAGCCAGACAATGTT---CTAAGCATGAATGGGCATTGC---TTGGCTGACTTTGGCACCTGCCTATGCCTCAACATCAATGCCAAGgtgtgaaaaccacctagaaattcgtagataagtataaagacatttagttg Alignment from Exonerate_coding2genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG ggacacacacatacttacaccaaagaactagcttggaatcttcctggtagAGATGTGGAGCCAGACAATGTT---CTAAGCATGAATGGGCATTGC---TTGGCTGACTTTGGCACCTGCCTATGCCTCAACATCAATGCCAAGgtgtgaaaaccacctagaaattcgtagataagtataaagacatttagttg Alignment from GeneWise GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG ggacacacacatacttacaccaaagaactagcttggaatcttcctggtagAGATGTGGAGCCAGACAATGTTCTA---AGCATGAATGGGCATTGC---TTGGCTGACTTTGGCACCTGCCTATGCCTCAACATCAATGCCAAGgtgtgaaaaccacctagaaattcgtagataagtataaagacatttagttg #### Cdc42bpg_ID1577_7 --> 0 - 0 Original Alignment GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG agtggtacctcctctacctctctccactgactatttacttttcaccatagGTGGACTCATCCGTTCCGGTAGGAACTCCAGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTATGGACCACAATTTGATTGGTGGTCACTGGGAGTCTGTGCCTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGTATCTCTGGTAGAGACTTATGGGAAAATCATGAACCATGAGgtacagctggagggctcagtgaccctggtattgtgaaggtcatctttgta Alignment from CESAR GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG agtggtacctcctctacctctctccactgactatttacttttcaccatagGTGGACTCATCCGTTCCGGTAGGAACTCCAGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTATGGACCACAATTTGATTGGTGGTCACTGGGAGTCTGTGCCTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGTATCTCTGGTAGAGACTTATGGGAAAATCATGAACCATGAGgtacagctggagggctcagtgaccctggtattgtgaaggtcatctttgta Alignment from Spaln_aa2Genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG agtggtacctcctctacctctctccactgactatttacttttcaccatagGTGGACTCATCCGTTCCGGTAGGAACTCCAGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTATGGACCACAATTTGATTGGTGGTCACTGGGAGTCTGTGCCTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGTATCTCTGGTAGAGACTTATGGGAAAATCATGAACCATGAGgtacagctggagggctcagtgaccctggtattgtgaaggtcatctttgta Alignment from Spaln_nt2Genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG agtggtacctcctctacctctctccactgactatttacttttcaccatagGTGGACTCATCCGTTCCGGTAGGAACTCCAGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTATGGACCACAATTTGATTGGTGGTCACTGGGAGTCTGTGCCTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGTATCTCTGGTAGAGACTTATGGGAAAATCATGAACCATGAGgtacagctggagggctcagtgaccctggtattgtgaaggtcatctttgta Alignment from Pairagon GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG agtggtacctcctctacctctctccactgactatttacttttcaccatagGTGGACTCATCCGTTCCGGTAGGAACTCCAGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTATGGACCACAATTTGATTGGTGGTCACTGGGAGTCTGTGCCTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGTATCTCTGGTAGAGACTTATGGGAAAATCATGAACCATGAGgtacagctggagggctcagtgaccctggtattgtgaaggtcatctttgta Alignment from Exonerate_protein2genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG agtggtacctcctctacctctctccactgactatttacttttcaccatagGTGGACTCATCCGTTCCGGTAGGAACTCCAGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTATGGACCACAATTTGATTGGTGGTCACTGGGAGTCTGTGCCTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGTATCTCTGGTAGAGACTTATGGGAAAATCATGAACCATGAGgtacagctggagggctcagtgaccctggtattgtgaaggtcatctttgta Alignment from Exonerate_coding2genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG agtggtacctcctctacctctctccactgactatttacttttcaccatagGTGGACTCATCCGTTCCGGTAGGAACTCCAGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTATGGACCACAATTTGATTGGTGGTCACTGGGAGTCTGTGCCTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGTATCTCTGGTAGAGACTTATGGGAAAATCATGAACCATGAGgtacagctggagggctcagtgaccctggtattgtgaaggtcatctttgta Alignment from GeneWise GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG agtggtacctcctctacctctctccactgactatttacttttcaccatagGTGGACTCATCCGTTCCGGTAGGAACTCCAGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTATGGACCACAATTTGATTGGTGGTCACTGGGAGTCTGTGCCTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGTATCTCTGGTAGAGACTTATGGGAAAATCATGAACCATGAGgtacagctggagggctcagtgaccctggtattgtgaaggtcatctttgta #### Cdc42bpg_ID1583_13 --> 0 - 0 Original Alignment GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCC---CTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG ccaagctgacccctctgaattcactccatcagctgcatctccttccacagGAGCTGCCTCAGGCTCAGGTAGCACTGCAAGTGCAAGATGCTGAATTGTGCCAAGCA---AACCGACAAGAAGAAGTCTTGCAGAGGCTGTGGGAAGCACAGGATAGAGAATCTGCTGCAGCAGGGCAGCTTCAGAGCCTAATAAATACTCAGCTCCAAGAGGCATGGGTGGTCCGCAGGGAGgtaagtaagaggcatccacacttccatagatgtctttaaatccatgtagc Alignment from CESAR GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTG---AACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG ccaagctgacccctctgaattcactccatcagctgcatctccttccacagGAGCTGCCTCAGGCTCAGGTAGCACTGCAAGTGCAAGATGCTGAATTGTGCCAAGCA---AACCGACAAGAAGAAGTCTTGCAGAGGCTGTGGGAAGCACAGGATAGAGAATCTGCTGCAGCAGGGCAGCTTCAGAGCCTAATAAATACTCAGCTCCAAGAGGCATGGGTGGTCCGCAGGGAGgtaagtaagaggcatccacacttccatagatgtctttaaatccatgtagc Alignment from Spaln_aa2Genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTG---AACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG ccaagctgacccctctgaattcactccatcagctgcatctccttccacagGAGCTGCCTCAGGCTCAGGTAGCACTGCAAGTGCAAGATGCTGAATTGTGCCAAGCA---AACCGACAAGAAGAAGTCTTGCAGAGGCTGTGGGAAGCACAGGATAGAGAATCTGCTGCAGCAGGGCAGCTTCAGAGCCTAATAAATACTCAGCTCCAAGAGGCATGGGTGGTCCGCAGGGAGgtaagtaagaggcatccacacttccatagatgtctttaaatccatgtagc Alignment from Spaln_nt2Genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGA---ACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG ccaagctgacccctctgaattcactccatcagctgcatctccttccacagGAGCTGCCTCAGGCTCAGGTAGCACTGCAAGTGCAAGATGCTGAATTGTGCCAAGC---AAACCGACAAGAAGAAGTCTTGCAGAGGCTGTGGGAAGCACAGGATAGAGAATCTGCTGCAGCAGGGCAGCTTCAGAGCCTAATAAATACTCAGCTCCAAGAGGCATGGGTGGTCCGCAGGGAGgtaagtaagaggcatccacacttccatagatgtctttaaatccatgtagc Alignment from Pairagon GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCC---TGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG ccaagctgacccctctgaattcactccatcagctgcatctccttccacagGAGCTGCCTCAGGCTCAGGTAGCACTGCAAGTGCAAGATGCTGAATTGTGCCAAGC---AAACCGACAAGAAGAAGTCTTGCAGAGGCTGTGGGAAGCACAGGATAGAGAATCTGCTGCAGCAGGGCAGCTTCAGAGCCTAATAAATACTCAGCTCCAAGAGGCATGGGTGGTCCGCAGGGAGgtaagtaagaggcatccacacttccatagatgtctttaaatccatgtagc Alignment from Exonerate_protein2genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTG---AACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG ccaagctgacccctctgaattcactccatcagctgcatctccttccacagGAGCTGCCTCAGGCTCAGGTAGCACTGCAAGTGCAAGATGCTGAATTGTGCCAAGCA---AACCGACAAGAAGAAGTCTTGCAGAGGCTGTGGGAAGCACAGGATAGAGAATCTGCTGCAGCAGGGCAGCTTCAGAGCCTAATAAATACTCAGCTCCAAGAGGCATGGGTGGTCCGCAGGGAGgtaagtaagaggcatccacacttccatagatgtctttaaatccatgtagc Alignment from Exonerate_coding2genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTG---AACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG ccaagctgacccctctgaattcactccatcagctgcatctccttccacagGAGCTGCCTCAGGCTCAGGTAGCACTGCAAGTGCAAGATGCTGAATTGTGCCAAGCA---AACCGACAAGAAGAAGTCTTGCAGAGGCTGTGGGAAGCACAGGATAGAGAATCTGCTGCAGCAGGGCAGCTTCAGAGCCTAATAAATACTCAGCTCCAAGAGGCATGGGTGGTCCGCAGGGAGgtaagtaagaggcatccacacttccatagatgtctttaaatccatgtagc Alignment from GeneWise GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTG---AACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG ccaagctgacccctctgaattcactccatcagctgcatctccttccacagGAGCTGCCTCAGGCTCAGGTAGCACTGCAAGTGCAAGATGCTGAATTGTGCCAAGCA---AACCGACAAGAAGAAGTCTTGCAGAGGCTGTGGGAAGCACAGGATAGAGAATCTGCTGCAGCAGGGCAGCTTCAGAGCCTAATAAATACTCAGCTCCAAGAGGCATGGGTGGTCCGCAGGGAGgtaagtaagaggcatccacacttccatagatgtctttaaatccatgtagc #### Cdc42bpg_ID1589_19 --> 0 - 2 Original Alignment GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAG---ATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTG---------CAGGAGGCTCAGCGGCAGGCTGAAcg gagaaacatctttattagtgcacatccactctcctggtaaacatcatcagGATCACCAGTGGAAAGCACGCAAGCTGCAACAGATGATGGAGGCATTAGCTCGGCTAGCCCTTCAGTCTGCACTGGAAACTGATATCAGGGCTAAGCAAAGTCTCCACGAGCAC---ATGCAGGTACAGGAGGCACAAAGGGCCCAACGTCAGGCAGAAtggtgagtttataaatgggttgggagtgaaacactttgccaggcactgcaat Alignment from CESAR GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAG---ATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTGCAGGAG---------GCTCAGCGGCAGGCTGAAcg gagaaacatctttattagtgcacatccactctcctggtaaacatcatcagGATCACCAGTGGAAAGCACGCAAGCTGCAACAGATGATGGAGGCATTAGCTCGGCTAGCCCTTCAGTCTGCACTGGAAACTGATATCAGGGCTAAGCAAAGTCTCCACGAGCACATG---CAGGTACAGGAGGCACAAAGGGCCCAACGTCAGGCAGAAtggtgagtttataaatgggttgggagtgaaacactttgccaggcactgcaat Alignment from Spaln_aa2Genome GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAG---ATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAG------CAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAACG gagaaacatctttattagtgcacatccactctcctggtaaacatcatcagGATCACCAGTGGAAAGCACGCAAGCTGCAACAGATGATGGAGGCATTAGCTCGGCTAGCCCTTCAGTCTGCACTGGAAACTGATATCAGGGCTAAGCAAAGTCTCCACGAGCACATGCAGGTACAGGAGGCACAAAGGGCCCAACGTCAGGCAGAATGgtgagtttataaatgggttgggagtgaaacactttgccaggcactgcaat Alignment from Spaln_nt2Genome GATCACCAGTGGAAGGCTCGGAGGCTGCA---GAAGATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTGCAGGAGGCTCAGCGG---------CAGGCTGAACG gagaaacatctttattagtgcacatccactctcctggtaaacatcatcagGATCACCAGTGGAAAGCACGCAAGCTGCAACAGATGATGGAGGCATTAGCTCGGCTAGCCCTTCAGTCTGCACTGGAAACTGATATCAGGGCTAAGCAAAGTCTCCACGAGCA---CATGCAGGTACAGGAGGCACAAAGGGCCCAACGTCAGGCAGAATGgtgagtttataaatgggttgggagtgaaacactttgccaggcactgcaat Alignment from Pairagon GATCACCAGTGGAAGGCTCGGAGGCTG---CAGAAGATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTGCAGGA---------GGCTCAGCGGCAGGCTGAACG gagaaacatctttattagtgcacatccactctcctggtaaacatcatcagGATCACCAGTGGAAAGCACGCAAGCTGCAACAGATGATGGAGGCATTAGCTCGGCTAGCCCTTCAGTCTGCACTGGAAACTGATATCAGGGCTAAGCAAAGTCTCCACGAGCA---CATGCAGGTACAGGAGGCACAAAGGGCCCAACGTCAGGCAGAATGgtgagtttataaatgggttgggagtgaaacactttgccaggcactgcaat Alignment from Exonerate_protein2genome GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAG---ATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAG------CAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAACG gagaaacatctttattagtgcacatccactctcctggtaaacatcatcagGATCACCAGTGGAAAGCACGCAAGCTGCAACAGATGATGGAGGCATTAGCTCGGCTAGCCCTTCAGTCTGCACTGGAAACTGATATCAGGGCTAAGCAAAGTCTCCACGAGCACATGCAGGTACAGGAGGCACAAAGGGCCCAACGTCAGGCAGAATGgtgagtttataaatgggttgggagtgaaacactttgccaggcactgcaat Alignment from Exonerate_coding2genome GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAG---ATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAG------CAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAACG gagaaacatctttattagtgcacatccactctcctggtaaacatcatcagGATCACCAGTGGAAAGCACGCAAGCTGCAACAGATGATGGAGGCATTAGCTCGGCTAGCCCTTCAGTCTGCACTGGAAACTGATATCAGGGCTAAGCAAAGTCTCCACGAGCACATGCAGGTACAGGAGGCACAAAGGGCCCAACGTCAGGCAGAATGgtgagtttataaatgggttgggagtgaaacactttgccaggcactgcaat Alignment from GeneWise GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAG---ATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAG------CAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAACG gagaaacatctttattagtgcacatccactctcctggtaaacatcatcagGATCACCAGTGGAAAGCACGCAAGCTGCAACAGATGATGGAGGCATTAGCTCGGCTAGCCCTTCAGTCTGCACTGGAAACTGATATCAGGGCTAAGCAAAGTCTCCACGAGCACATGCAGGTACAGGAGGCACAAAGGGCCCAACGTCAGGCAGAATGgtgagtttataaatgggttgggagtgaaacactttgccaggcactgcaat #### Cdc42bpg_ID1591_21 --> 2 - 0 Original Alignment atGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAG agtattatggcagggcagtggattcaagtgtgtttatttctgtttggcagatGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAGgtaagttggacatactaggtcaagcaagtcacaacagctgatcataagca Alignment from CESAR atGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAG agtattatggcagggcagtggattcaagtgtgtttatttctgtttggcagatGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAGgtaagttggacatactaggtcaagcaagtcacaacagctgatcataagca Alignment from Spaln_aa2Genome ATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAG agtattatggcagggcagtggattcaagtgtgtttatttctgtttggcagATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAGgtaagttggacatactaggtcaagcaagtcacaacagctgatcataagca Alignment from Spaln_nt2Genome ATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAG agtattatggcagggcagtggattcaagtgtgtttatttctgtttggcagATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAGgtaagttggacatactaggtcaagcaagtcacaacagctgatcataagca Alignment from Pairagon ATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAG agtattatggcagggcagtggattcaagtgtgtttatttctgtttggcagATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAGgtaagttggacatactaggtcaagcaagtcacaacagctgatcataagca Alignment from Exonerate_protein2genome ATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAG agtattatggcagggcagtggattcaagtgtgtttatttctgtttggcagATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAGgtaagttggacatactaggtcaagcaagtcacaacagctgatcataagca Alignment from Exonerate_coding2genome ATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAG agtattatggcagggcagtggattcaagtgtgtttatttctgtttggcagATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAGgtaagttggacatactaggtcaagcaagtcacaacagctgatcataagca Alignment from GeneWise ATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAG agtattatggcagggcagtggattcaagtgtgtttatttctgtttggcagATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAGgtaagttggacatactaggtcaagcaagtcacaacagctgatcataagca #### Cdc42bpg_ID1592_22 --> 0 - 0 Original Alignment AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG taacacgtacgtagtggctaagtttttccaccattggaatttgctcctagAAAGACTTTGCTAAGGACCCAGGTAATTCAGCTGAGGGTCCAAGGTCTGGAGCAGAAGCAGAGCTTAGACCAGAGGGCCGGCGCAGTCTACGCATGGGTgtgaggtcataaccaactagaatagaactacaggggatttcctcattgac Alignment from CESAR AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG taacacgtacgtagtggctaagtttttccaccattggaatttgctcctagAAAGACTTTGCTAAGGACCCAGGTAATTCAGCTGAGGGTCCAAGGTCTGGAGCAGAAGCAGAGCTTAGACCAGAGGGCCGGCGCAGTCTACGCATGGGTgtgaggtcataaccaactagaatagaactacaggggatttcctcattgac Alignment from Spaln_aa2Genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG taacacgtacgtagtggctaagtttttccaccattggaatttgctcctagAAAGACTTTGCTAAGGACCCAGGTAATTCAGCTGAGGGTCCAAGGTCTGGAGCAGAAGCAGAGCTTAGACCAGAGGGCCGGCGCAGTCTACGCATGGGTgtgaggtcataaccaactagaatagaactacaggggatttcctcattgac Alignment from Spaln_nt2Genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG taacacgtacgtagtggctaagtttttccaccattggaatttgctcctagAAAGACTTTGCTAAGGACCCAGGTAATTCAGCTGAGGGTCCAAGGTCTGGAGCAGAAGCAGAGCTTAGACCAGAGGGCCGGCGCAGTCTACGCATGGGTgtgaggtcataaccaactagaatagaactacaggggatttcctcattgac Alignment from Pairagon AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG taacacgtacgtagtggctaagtttttccaccattggaatttgctcctagAAAGACTTTGCTAAGGACCCAGGTAATTCAGCTGAGGGTCCAAGGTCTGGAGCAGAAGCAGAGCTTAGACCAGAGGGCCGGCGCAGTCTACGCATGGGTgtgaggtcataaccaactagaatagaactacaggggatttcctcattgac Alignment from Exonerate_protein2genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG taacacgtacgtagtggctaagtttttccaccattggaatttgctcctagAAAGACTTTGCTAAGGACCCAGGTAATTCAGCTGAGGGTCCAAGGTCTGGAGCAGAAGCAGAGCTTAGACCAGAGGGCCGGCGCAGTCTACGCATGGGTgtgaggtcataaccaactagaatagaactacaggggatttcctcattgac Alignment from Exonerate_coding2genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG taacacgtacgtagtggctaagtttttccaccattggaatttgctcctagAAAGACTTTGCTAAGGACCCAGGTAATTCAGCTGAGGGTCCAAGGTCTGGAGCAGAAGCAGAGCTTAGACCAGAGGGCCGGCGCAGTCTACGCATGGGTgtgaggtcataaccaactagaatagaactacaggggatttcctcattgac Alignment from GeneWise AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG taacacgtacgtagtggctaagtttttccaccattggaatttgctcctagAAAGACTTTGCTAAGGACCCAGGTAATTCAGCTGAGGGTCCAAGGTCTGGAGCAGAAGCAGAGCTTAGACCAGAGGGCCGGCGCAGTCTACGCATGGGTgtgaggtcataaccaactagaatagaactacaggggatttcctcattgac #### Cdc42bpg_ID1593_23 --> 0 - 0 Original Alignment AGTGTGTTCCCCAGGGTGCCCGCAGCCACCACCACCCCTGCCGAAGGTCCTCCTGCTAAG tacaggggatttcctcattgacaatttgagattatttctttaacttgtagTGTGTGTTCCCCCGTGTGCATGCACCCACCACCACCCCCGCCAAAGGTCCACCTGCTAAGgtagctgtccagagtgatccgagcactcaagtgatagagcacagccatta Alignment from CESAR AGTGTGTTCCCCAGGGTGCCCGCAGCCACCACCACCCCTGCCGAAGGTCCTCCTGCTAAG tacaggggatttcctcattgacaatttgagattatttctttaacttgtagTGTGTGTTCCCCCGTGTGCATGCACCCACCACCACCCCCGCCAAAGGTCCACCTGCTAAGgtagctgtccagagtgatccgagcactcaagtgatagagcacagccatta Alignment from Spaln_aa2Genome AGTGTGTTCCCCAGGGTGCCCGCAGCCACCACCACCCCTGCCGAAGGTCCTCCTGCTAAG tacaggggatttcctcattgacaatttgagattatttctttaacttgtagTGTGTGTTCCCCCGTGTGCATGCACCCACCACCACCCCCGCCAAAGGTCCACCTGCTAAGgtagctgtccagagtgatccgagcactcaagtgatagagcacagccatta Alignment from Spaln_nt2Genome AGTGTGTTCCCCAGGGTGCCCGCAGCCACCACCACCCCTGCCGAAGGTCCTCCTGCTAAG tacaggggatttcctcattgacaatttgagattatttctttaacttgtagTGTGTGTTCCCCCGTGTGCATGCACCCACCACCACCCCCGCCAAAGGTCCACCTGCTAAGgtagctgtccagagtgatccgagcactcaagtgatagagcacagccatta Alignment from Pairagon -------------------------------------------------GAGTGTGTTCCCCAGGGTGCCCGCAGCCACCACCACCCCTGCCGAAGGTCCTCCTGCTAAG TACAGGGGATTTCCTCATTGACAATTTGAGATTATTTCTTTAACTTGTAGTGTGTGTTCCCCCGTGTGCATGCACCCACCACCACCCCCGCCAAAGGTCCACCTGCTAAGgtagctgtccagagtgatccgagcactcaagtgatagagcacagccatta Alignment from Exonerate_protein2genome AGTGTGTTCCCCAGGGTGCCCGCAGCCACCACCACCCCTGCCGAAGGTCCTCCTGCTAAG tacaggggatttcctcattgacaatttgagattatttctttaacttgtagTGTGTGTTCCCCCGTGTGCATGCACCCACCACCACCCCCGCCAAAGGTCCACCTGCTAAGgtagctgtccagagtgatccgagcactcaagtgatagagcacagccatta Alignment from Exonerate_coding2genome AGTGTGTTCCCCAGGGTGCCCGCAGCCACCACCACCCCTGCCGAAGGTCCTCCTGCTAAG tacaggggatttcctcattgacaatttgagattatttctttaacttgtagTGTGTGTTCCCCCGTGTGCATGCACCCACCACCACCCCCGCCAAAGGTCCACCTGCTAAGgtagctgtccagagtgatccgagcactcaagtgatagagcacagccatta Alignment from GeneWise AGTGTGTTCCCCAGGGTGCCCGCAGCCACCACCACCCCTGCCGAAGGTCCTCCTGCTAAG tacaggggatttcctcattgacaatttgagattatttctttaacttgtagTGTGTGTTCCCCCGTGTGCATGCACCCACCACCACCCCCGCCAAAGGTCCACCTGCTAAGgtagctgtccagagtgatccgagcactcaagtgatagagcacagccatta #### Cdc42bpg_ID1594_24 --> 0 - 1 Original Alignment CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACa tttggtaagagaactactgaggcttttggagacactcttgttcgctacagCCTGGTTCACACACCTTGAGACCTCGCAGTTTTCCATCTCCGACAAAGTGTCTCCGCTGCACTTCGCTGATGTTGGGCCTTGGCCGCCAGGGCCTGGGCTGTGACagtgagtacatatgtattatagtcttccctcattgttcaacatagacatgc Alignment from CESAR CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACa tttggtaagagaactactgaggcttttggagacactcttgttcgctacagCCTGGTTCACACACCTTGAGACCTCGCAGTTTTCCATCTCCGACAAAGTGTCTCCGCTGCACTTCGCTGATGTTGGGCCTTGGCCGCCAGGGCCTGGGCTGTGACagtgagtacatatgtattatagtcttccctcattgttcaacatagacatgc Alignment from Spaln_aa2Genome CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA tttggtaagagaactactgaggcttttggagacactcttgttcgctacagCCTGGTTCACACACCTTGAGACCTCGCAGTTTTCCATCTCCGACAAAGTGTCTCCGCTGCACTTCGCTGATGTTGGGCCTTGGCCGCCAGGGCCTGGGCTGTGACAgtgagtacatatgtattatagtcttccctcattgttcaacatagacatgc Alignment from Spaln_nt2Genome CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA tttggtaagagaactactgaggcttttggagacactcttgttcgctacagCCTGGTTCACACACCTTGAGACCTCGCAGTTTTCCATCTCCGACAAAGTGTCTCCGCTGCACTTCGCTGATGTTGGGCCTTGGCCGCCAGGGCCTGGGCTGTGACAgtgagtacatatgtattatagtcttccctcattgttcaacatagacatgc Alignment from Pairagon CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA tttggtaagagaactactgaggcttttggagacactcttgttcgctacagCCTGGTTCACACACCTTGAGACCTCGCAGTTTTCCATCTCCGACAAAGTGTCTCCGCTGCACTTCGCTGATGTTGGGCCTTGGCCGCCAGGGCCTGGGCTGTGACAgtgagtacatatgtattatagtcttccctcattgttcaacatagacatgc Alignment from Exonerate_protein2genome CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA tttggtaagagaactactgaggcttttggagacactcttgttcgctacagCCTGGTTCACACACCTTGAGACCTCGCAGTTTTCCATCTCCGACAAAGTGTCTCCGCTGCACTTCGCTGATGTTGGGCCTTGGCCGCCAGGGCCTGGGCTGTGACAgtgagtacatatgtattatagtcttccctcattgttcaacatagacatgc Alignment from Exonerate_coding2genome CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA tttggtaagagaactactgaggcttttggagacactcttgttcgctacagCCTGGTTCACACACCTTGAGACCTCGCAGTTTTCCATCTCCGACAAAGTGTCTCCGCTGCACTTCGCTGATGTTGGGCCTTGGCCGCCAGGGCCTGGGCTGTGACAgtgagtacatatgtattatagtcttccctcattgttcaacatagacatgc Alignment from GeneWise CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA tttggtaagagaactactgaggcttttggagacactcttgttcgctacagCCTGGTTCACACACCTTGAGACCTCGCAGTTTTCCATCTCCGACAAAGTGTCTCCGCTGCACTTCGCTGATGTTGGGCCTTGGCCGCCAGGGCCTGGGCTGTGACAgtgagtacatatgtattatagtcttccctcattgttcaacatagacatgc #### Cdc42bpg_ID1596_26 --> 0 - 2 Original Alignment CTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAag CTTTTTGTCAgtgagttgggggggttgttgccatttttgtttgtattcagGTACGACAGCCATCATGTGTTCGATGGGACTGGCAGCGGGTGTATGCTGCTCTCAGTGACTCCCGTTTGTTATTGTTTGATGCTCCTGACCCTCGTGGTAGCCTAGCAAGTGGCATCCTTCTTCAGGCCTTAGATCTAaggtcagagcaggcccagaggacatagggagcccacagcacatcagaaccct Alignment from CESAR CTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAag CTTTTTGTCAgtgagttgggggggttgttgccatttttgtttgtattcagGTACGACAGCCATCATGTGTTCGATGGGACTGGCAGCGGGTGTATGCTGCTCTCAGTGACTCCCGTTTGTTATTGTTTGATGCTCCTGACCCTCGTGGTAGCCTAGCAAGTGGCATCCTTCTTCAGGCCTTAGATCTAaggtcagagcaggcccagaggacatagggagcccacagcacatcagaaccct Alignment from Spaln_aa2Genome CTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG CTTTTTGTCAgtgagttgggggggttgttgccatttttgtttgtattcagGTACGACAGCCATCATGTGTTCGATGGGACTGGCAGCGGGTGTATGCTGCTCTCAGTGACTCCCGTTTGTTATTGTTTGATGCTCCTGACCCTCGTGGTAGCCTAGCAAGTGGCATCCTTCTTCAGGCCTTAGATCTAAGgtcagagcaggcccagaggacatagggagcccacagcacatcagaaccct Alignment from Spaln_nt2Genome CTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG CTTTTTGTCAgtgagttgggggggttgttgccatttttgtttgtattcagGTACGACAGCCATCATGTGTTCGATGGGACTGGCAGCGGGTGTATGCTGCTCTCAGTGACTCCCGTTTGTTATTGTTTGATGCTCCTGACCCTCGTGGTAGCCTAGCAAGTGGCATCCTTCTTCAGGCCTTAGATCTAAGgtcagagcaggcccagaggacatagggagcccacagcacatcagaaccct Alignment from Pairagon CTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG CTTTTTGTCAgtgagttgggggggttgttgccatttttgtttgtattcagGTACGACAGCCATCATGTGTTCGATGGGACTGGCAGCGGGTGTATGCTGCTCTCAGTGACTCCCGTTTGTTATTGTTTGATGCTCCTGACCCTCGTGGTAGCCTAGCAAGTGGCATCCTTCTTCAGGCCTTAGATCTAAGgtcagagcaggcccagaggacatagggagcccacagcacatcagaaccct Alignment from Exonerate_protein2genome CTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG CTTTTTGTCAgtgagttgggggggttgttgccatttttgtttgtattcagGTACGACAGCCATCATGTGTTCGATGGGACTGGCAGCGGGTGTATGCTGCTCTCAGTGACTCCCGTTTGTTATTGTTTGATGCTCCTGACCCTCGTGGTAGCCTAGCAAGTGGCATCCTTCTTCAGGCCTTAGATCTAAGgtcagagcaggcccagaggacatagggagcccacagcacatcagaaccct Alignment from Exonerate_coding2genome CTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG CTTTTTGTCAgtgagttgggggggttgttgccatttttgtttgtattcagGTACGACAGCCATCATGTGTTCGATGGGACTGGCAGCGGGTGTATGCTGCTCTCAGTGACTCCCGTTTGTTATTGTTTGATGCTCCTGACCCTCGTGGTAGCCTAGCAAGTGGCATCCTTCTTCAGGCCTTAGATCTAAGgtcagagcaggcccagaggacatagggagcccacagcacatcagaaccct Alignment from GeneWise CTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG CTTTTTGTCAgtgagttgggggggttgttgccatttttgtttgtattcagGTACGACAGCCATCATGTGTTCGATGGGACTGGCAGCGGGTGTATGCTGCTCTCAGTGACTCCCGTTTGTTATTGTTTGATGCTCCTGACCCTCGTGGTAGCCTAGCAAGTGGCATCCTTCTTCAGGCCTTAGATCTAAGgtcagagcaggcccagaggacatagggagcccacagcacatcagaaccct #### Cdca5_ID1430_4 --> 0 - 0 Original Alignment GTCCCAGATGTCCACACGGTTCGAAGAAGTCCTAGG ctcaagctaattaactaggctctaactactagcctgctctttccccacagGTACCAGACGTACACACAGTCAGAAGAACTCCTAGGgtgagtttaggtcatttgctatttttttatggtcactggtaaagaggtgg Alignment from CESAR GTCCCAGATGTCCACACGGTTCGAAGAAGTCCTAGG ctcaagctaattaactaggctctaactactagcctgctctttccccacagGTACCAGACGTACACACAGTCAGAAGAACTCCTAGGgtgagtttaggtcatttgctatttttttatggtcactggtaaagaggtgg Alignment from Spaln_aa2Genome GTCCCAGATGTCCACACGGTTCGAAGAAGTCCTAGG ctcaagctaattaactaggctctaactactagcctgctctttccccacagGTACCAGACGTACACACAGTCAGAAGAACTCCTAGGgtgagtttaggtcatttgctatttttttatggtcactggtaaagaggtgg Alignment from Spaln_nt2Genome GTCCCAGATGTCCACACGGTTCGAAGAAGTCCTAGG ctcaagctaattaactaggctctaactactagcctgctctttccccacagGTACCAGACGTACACACAGTCAGAAGAACTCCTAGGgtgagtttaggtcatttgctatttttttatggtcactggtaaagaggtgg Alignment from Pairagon GTCCCAGATGTCCACACGGTTCGAAGAAGTCCTAGG ctcaagctaattaactaggctctaactactagcctgctctttccccacagGTACCAGACGTACACACAGTCAGAAGAACTCCTAGGgtgagtttaggtcatttgctatttttttatggtcactggtaaagaggtgg Alignment from Exonerate_protein2genome GTCCCAGATGTCCACACGGTTCGAAGAAGTCCTAGG ctcaagctaattaactaggctctaactactagcctgctctttccccacagGTACCAGACGTACACACAGTCAGAAGAACTCCTAGGgtgagtttaggtcatttgctatttttttatggtcactggtaaagaggtgg Alignment from Exonerate_coding2genome ctcaagctaattaactaggctctaactactagcctgctctttccccacaggtaccagacgtacacacagtcagaagaactcctagggtgagtttaggtcatttgctatttttttatggtcactggtaaagaggtgg Alignment from GeneWise GTCCCAGATGTCCACACGGTTCGAAGAAGTCCTAGG ctcaagctaattaactaggctctaactactagcctgctctttccccacagGTACCAGACGTACACACAGTCAGAAGAACTCCTAGGgtgagtttaggtcatttgctatttttttatggtcactggtaaagaggtgg #### Cep78_ID3976_10 --> 1 - 0 Original Alignment gAGTTCTTCATTAATCAAAACTCGTGATCTATCAAATCACCTGAAG tgacttattgtgtgcatgcattgtgattgctatgtttttttctttttcaggAGTTCTTCATTAATCAAGACTCGTGATCTATCCAATCACCTGAAGgtaagttctagtttcattttgatgtgagccacaatgagcgttcattttga Alignment from CESAR gAGTTCTTCATTAATCAAAACTCGTGATCTATCAAATCACCTGAAG tgacttattgtgtgcatgcattgtgattgctatgtttttttctttttcaggAGTTCTTCATTAATCAAGACTCGTGATCTATCCAATCACCTGAAGgtaagttctagtttcattttgatgtgagccacaatgagcgttcattttga Alignment from Spaln_aa2Genome GAGTTCTTCATTAATCAAAACTCGTGATCTATCAAATCACCTGAAG tgacttattgtgtgcatgcattgtgattgctatgtttttttctttttcagGAGTTCTTCATTAATCAAGACTCGTGATCTATCCAATCACCTGAAGgtaagttctagtttcattttgatgtgagccacaatgagcgttcattttga Alignment from Spaln_nt2Genome GAGTTCTTCATTAATCAAAACTCGTGATCTATCAAATCACCTGAAG tgacttattgtgtgcatgcattgtgattgctatgtttttttctttttcagGAGTTCTTCATTAATCAAGACTCGTGATCTATCCAATCACCTGAAGgtaagttctagtttcattttgatgtgagccacaatgagcgttcattttga Alignment from Pairagon GAGTTCTTCATTAATCAAAACTCGTGATCTATCAAATCACCTGAAG tgacttattgtgtgcatgcattgtgattgctatgtttttttctttttcagGAGTTCTTCATTAATCAAGACTCGTGATCTATCCAATCACCTGAAGgtaagttctagtttcattttgatgtgagccacaatgagcgttcattttga Alignment from Exonerate_protein2genome GAGTTCTTCATTAATCAAAACTCGTGATCTATCAAATCACCTGAAG tgacttattgtgtgcatgcattgtgattgctatgtttttttctttttcagGAGTTCTTCATTAATCAAGACTCGTGATCTATCCAATCACCTGAAGgtaagttctagtttcattttgatgtgagccacaatgagcgttcattttga Alignment from Exonerate_coding2genome GAGTTCTTCATTAATCAAAACTCGTGATCTATCAAATCACCTGAAG tgacttattgtgtgcatgcattgtgattgctatgtttttttctttttcagGAGTTCTTCATTAATCAAGACTCGTGATCTATCCAATCACCTGAAGgtaagttctagtttcattttgatgtgagccacaatgagcgttcattttga Alignment from GeneWise GAGTTCTTCATTAATCAAAACTCGTGATCTATCAAATCACCTGAAG tgacttattgtgtgcatgcattgtgattgctatgtttttttctttttcagGAGTTCTTCATTAATCAAGACTCGTGATCTATCCAATCACCTGAAGgtaagttctagtttcattttgatgtgagccacaatgagcgttcattttga #### Cep78_ID3983_3 --> 0 - 1 Original Alignment GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAa ttggccatctcaatgggtagatacctgatgatcttccctgtgctctgcagGGATTGAGCAAATCAACCTCTCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGGTTAGAAagtcagctaataaattttataatcattcttggtgcctcattccactcattt Alignment from CESAR GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAa ttggccatctcaatgggtagatacctgatgatcttccctgtgctctgcagGGATTGAGCAAATCAACCTCTCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGGTTAGAAagtcagctaataaattttataatcattcttggtgcctcattccactcattt Alignment from Spaln_aa2Genome GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA ttggccatctcaatgggtagatacctgatgatcttccctgtgctctgcagGGATTGAGCAAATCAACCTCTCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGGTTAGAAAgtcagctaataaattttataatcattcttggtgcctcattccactcattt Alignment from Spaln_nt2Genome GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA ttggccatctcaatgggtagatacctgatgatcttccctgtgctctgcagGGATTGAGCAAATCAACCTCTCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGGTTAGAAAgtcagctaataaattttataatcattcttggtgcctcattccactcattt Alignment from Pairagon GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA ttggccatctcaatgggtagatacctgatgatcttccctgtgctctgcagGGATTGAGCAAATCAACCTCTCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGGTTAGAAAgtcagctaataaattttataatcattcttggtgcctcattccactcattt Alignment from Exonerate_protein2genome GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA ttggccatctcaatgggtagatacctgatgatcttccctgtgctctgcagGGATTGAGCAAATCAACCTCTCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGGTTAGAAAgtcagctaataaattttataatcattcttggtgcctcattccactcattt Alignment from Exonerate_coding2genome GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA ttggccatctcaatgggtagatacctgatgatcttccctgtgctctgcagGGATTGAGCAAATCAACCTCTCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGGTTAGAAAgtcagctaataaattttataatcattcttggtgcctcattccactcattt Alignment from GeneWise GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA ttggccatctcaatgggtagatacctgatgatcttccctgtgctctgcagGGATTGAGCAAATCAACCTCTCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGGTTAGAAAgtcagctaataaattttataatcattcttggtgcctcattccactcattt #### Chuk_ID8917_11 --> 0 - 1 Original Alignment AGAGGCTGTGATAGCTACATGGTTTATTTGTTTGATAAAAGTAAGACTGTATATGAAGGACCATTTGCATCCAGAAGTTTATCTGATTGTGTAAATTATATTg acactaggctgggtaagtctttctgtttgcaccttccactctgctcttagAGAGGCTGTGATAGCTACATGGATTATTTGTTTGACAGAAGTAAGACTATATATGAAGGACCATTTGCATCCAGAAGCTTATCTGGTTGTGTAAATTATATTggtagggtagagttctgttcattgttagaatgaaagtaaaagctgcataca Alignment from CESAR AGAGGCTGTGATAGCTACATGGTTTATTTGTTTGATAAAAGTAAGACTGTATATGAAGGACCATTTGCATCCAGAAGTTTATCTGATTGTGTAAATTATATTg acactaggctgggtaagtctttctgtttgcaccttccactctgctcttagAGAGGCTGTGATAGCTACATGGATTATTTGTTTGACAGAAGTAAGACTATATATGAAGGACCATTTGCATCCAGAAGCTTATCTGGTTGTGTAAATTATATTggtagggtagagttctgttcattgttagaatgaaagtaaaagctgcataca Alignment from Spaln_aa2Genome AGAGGCTGTGATAGCTACATGGTTTATTTGTTTGATAAAAGTAAGACTGTATATGAAGGACCATTTGCATCCAGAAGTTTATCTGATTGTGTAAATTATATTG acactaggctgggtaagtctttctgtttgcaccttccactctgctcttagAGAGGCTGTGATAGCTACATGGATTATTTGTTTGACAGAAGTAAGACTATATATGAAGGACCATTTGCATCCAGAAGCTTATCTGGTTGTGTAAATTATATTGgtagggtagagttctgttcattgttagaatgaaagtaaaagctgcataca Alignment from Spaln_nt2Genome AGAGGCTGTGATAGCTACATGGTTTATTTGTTTGATAAAAGTAAGACTGTATATGAAGGACCATTTGCATCCAGAAGTTTATCTGATTGTGTAAATTATATTG acactaggctgggtaagtctttctgtttgcaccttccactctgctcttagAGAGGCTGTGATAGCTACATGGATTATTTGTTTGACAGAAGTAAGACTATATATGAAGGACCATTTGCATCCAGAAGCTTATCTGGTTGTGTAAATTATATTGgtagggtagagttctgttcattgttagaatgaaagtaaaagctgcataca Alignment from Pairagon AGAGGCTGTGATAGCTACATGGTTTATTTGTTTGATAAAAGTAAGACTGTATATGAAGGACCATTTGCATCCAGAAGTTTATCTGATTGTGTAAATTATATTG acactaggctgggtaagtctttctgtttgcaccttccactctgctcttagAGAGGCTGTGATAGCTACATGGATTATTTGTTTGACAGAAGTAAGACTATATATGAAGGACCATTTGCATCCAGAAGCTTATCTGGTTGTGTAAATTATATTGgtagggtagagttctgttcattgttagaatgaaagtaaaagctgcataca Alignment from Exonerate_protein2genome AGAGGCTGTGATAGCTACATGGTTTATTTGTTTGATAAAAGTAAGACTGTATATGAAGGACCATTTGCATCCAGAAGTTTATCTGATTGTGTAAATTATATTG acactaggctgggtaagtctttctgtttgcaccttccactctgctcttagAGAGGCTGTGATAGCTACATGGATTATTTGTTTGACAGAAGTAAGACTATATATGAAGGACCATTTGCATCCAGAAGCTTATCTGGTTGTGTAAATTATATTGgtagggtagagttctgttcattgttagaatgaaagtaaaagctgcataca Alignment from Exonerate_coding2genome AGAGGCTGTGATAGCTACATGGTTTATTTGTTTGATAAAAGTAAGACTGTATATGAAGGACCATTTGCATCCAGAAGTTTATCTGATTGTGTAAATTATATTG acactaggctgggtaagtctttctgtttgcaccttccactctgctcttagAGAGGCTGTGATAGCTACATGGATTATTTGTTTGACAGAAGTAAGACTATATATGAAGGACCATTTGCATCCAGAAGCTTATCTGGTTGTGTAAATTATATTGgtagggtagagttctgttcattgttagaatgaaagtaaaagctgcataca Alignment from GeneWise AGAGGCTGTGATAGCTACATGGTTTATTTGTTTGATAAAAGTAAGACTGTATATGAAGGACCATTTGCATCCAGAAGTTTATCTGATTGTGTAAATTATATTG acactaggctgggtaagtctttctgtttgcaccttccactctgctcttagAGAGGCTGTGATAGCTACATGGATTATTTGTTTGACAGAAGTAAGACTATATATGAAGGACCATTTGCATCCAGAAGCTTATCTGGTTGTGTAAATTATATTGgtagggtagagttctgttcattgttagaatgaaagtaaaagctgcataca #### Chuk_ID8920_8 --> 1 - 2 Original Alignment gCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTag ggggtatggttcttggatgcattacgctaccctacctcttctcttcctaggCATGAGGAGATTAAGAAGAAAGATCCAAAATGCATATTTGCGTGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTaggtgagtgatgcttagagtctttgggaatatgccccttatctattcatagt Alignment from CESAR gCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTag ggggtatggttcttggatgcattacgctaccctacctcttctcttcctaggCATGAGGAGATTAAGAAGAAAGATCCAAAATGCATATTTGCGTGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTaggtgagtgatgcttagagtctttgggaatatgccccttatctattcatagt Alignment from Spaln_aa2Genome GCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG ggggtatggttcttggatgcattacgctaccctacctcttctcttcctagGCATGAGGAGATTAAGAAGAAAGATCCAAAATGCATATTTGCGTGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtgagtgatgcttagagtctttgggaatatgccccttatctattcatagt Alignment from Spaln_nt2Genome GCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG ggggtatggttcttggatgcattacgctaccctacctcttctcttcctagGCATGAGGAGATTAAGAAGAAAGATCCAAAATGCATATTTGCGTGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtgagtgatgcttagagtctttgggaatatgccccttatctattcatagt Alignment from Pairagon GCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG ggggtatggttcttggatgcattacgctaccctacctcttctcttcctagGCATGAGGAGATTAAGAAGAAAGATCCAAAATGCATATTTGCGTGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtgagtgatgcttagagtctttgggaatatgccccttatctattcatagt Alignment from Exonerate_protein2genome GCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG ggggtatggttcttggatgcattacgctaccctacctcttctcttcctagGCATGAGGAGATTAAGAAGAAAGATCCAAAATGCATATTTGCGTGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtgagtgatgcttagagtctttgggaatatgccccttatctattcatagt Alignment from Exonerate_coding2genome GCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG ggggtatggttcttggatgcattacgctaccctacctcttctcttcctagGCATGAGGAGATTAAGAAGAAAGATCCAAAATGCATATTTGCGTGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtgagtgatgcttagagtctttgggaatatgccccttatctattcatagt Alignment from GeneWise GCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG ggggtatggttcttggatgcattacgctaccctacctcttctcttcctagGCATGAGGAGATTAAGAAGAAAGATCCAAAATGCATATTTGCGTGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtgagtgatgcttagagtctttgggaatatgccccttatctattcatagt #### Chuk_ID8924_4 --> 0 - 1 Original Alignment CTACTCAACAAACCAGAAAATTGTTGTGGACTTAAAGAAAGCCAGATACTTTCTTTACTGAGTGACATAg tgcttaatacagtggtacatcagttgttttttttcctctttactttacagCTACTAAACAAACCAGAAAATTGTTGTGGACTTAAAGAAAGCCAGATCCTCTCACTTCTGAGTGACATAggtgggaaccacccttagtgtgaactatgtcccactatccctttaagacct Alignment from CESAR CTACTCAACAAACCAGAAAATTGTTGTGGACTTAAAGAAAGCCAGATACTTTCTTTACTGAGTGACATAg tgcttaatacagtggtacatcagttgttttttttcctctttactttacagCTACTAAACAAACCAGAAAATTGTTGTGGACTTAAAGAAAGCCAGATCCTCTCACTTCTGAGTGACATAggtgggaaccacccttagtgtgaactatgtcccactatccctttaagacct Alignment from Spaln_aa2Genome CTACTCAACAAACCAGAAAATTGTTGTGGACTTAAAGAAAGCCAGATACTTTCTTTACTGAGTGACATAG tgcttaatacagtggtacatcagttgttttttttcctctttactttacagCTACTAAACAAACCAGAAAATTGTTGTGGACTTAAAGAAAGCCAGATCCTCTCACTTCTGAGTGACATAGgtgggaaccacccttagtgtgaactatgtcccactatccctttaagacct Alignment from Spaln_nt2Genome CTACTCAACAAACCAGAAAATTGTTGTGGACTTAAAGAAAGCCAGATACTTTCTTTACTGAGTGACATAG tgcttaatacagtggtacatcagttgttttttttcctctttactttacagCTACTAAACAAACCAGAAAATTGTTGTGGACTTAAAGAAAGCCAGATCCTCTCACTTCTGAGTGACATAGgtgggaaccacccttagtgtgaactatgtcccactatccctttaagacct Alignment from Pairagon CTACTCAACAAACCAGAAAATTGTTGTGGACTTAAAGAAAGCCAGATACTTTCTTTACTGAGTGACATAG tgcttaatacagtggtacatcagttgttttttttcctctttactttacagCTACTAAACAAACCAGAAAATTGTTGTGGACTTAAAGAAAGCCAGATCCTCTCACTTCTGAGTGACATAGgtgggaaccacccttagtgtgaactatgtcccactatccctttaagacct Alignment from Exonerate_protein2genome CTACTCAACAAACCAGAAAATTGTTGTGGACTTAAAGAAAGCCAGATACTTTCTTTACTGAGTGACATAG tgcttaatacagtggtacatcagttgttttttttcctctttactttacagCTACTAAACAAACCAGAAAATTGTTGTGGACTTAAAGAAAGCCAGATCCTCTCACTTCTGAGTGACATAGgtgggaaccacccttagtgtgaactatgtcccactatccctttaagacct Alignment from Exonerate_coding2genome CTACTCAACAAACCAGAAAATTGTTGTGGACTTAAAGAAAGCCAGATACTTTCTTTACTGAGTGACATAG tgcttaatacagtggtacatcagttgttttttttcctctttactttacagCTACTAAACAAACCAGAAAATTGTTGTGGACTTAAAGAAAGCCAGATCCTCTCACTTCTGAGTGACATAGgtgggaaccacccttagtgtgaactatgtcccactatccctttaagacct Alignment from GeneWise CTACTCAACAAACCAGAAAATTGTTGTGGACTTAAAGAAAGCCAGATACTTTCTTTACTGAGTGACATAG tgcttaatacagtggtacatcagttgttttttttcctctttactttacagCTACTAAACAAACCAGAAAATTGTTGTGGACTTAAAGAAAGCCAGATCCTCTCACTTCTGAGTGACATAGgtgggaaccacccttagtgtgaactatgtcccactatccctttaagacct #### Cnnm1_ID8731_3 --> 2 - 1 Original Alignment ctGACAATCGGAAA---AAGCAGAGGGTCCCACACCGGGAGAGAAGGCGGCATGATTTCTCTCTGTTCAAGCTTTCAGACTCCGAGATCAGAGTCAAGATCTCGCCACAGCTGCTGCTTGCCACACACCGCTTCATGGCCACAg caactataggacaatggggtagacagtcttgttgttctctggcccattagcaGATAATCGCAAGAAAAAAGAAAGAGTCCCCGACCAGGAGAGAAGGTGGCATGATTTTTCTCTTTTCAAGCTCTCTGATTCTGGGATCAGAGTCAAAATCTCGCCACAGCTACTCCTCACTACACACCTTTTCATGGGTTCCagtgagctaaaccctagctattacttatatcccctgatcctgcatgttcaa Alignment from CESAR ctGACAATCGG---AAAAAGCAGAGGGTCCCACACCGGGAGAGAAGGCGGCATGATTTCTCTCTGTTCAAGCTTTCAGACTCCGAGATCAGAGTCAAGATCTCGCCACAGCTGCTGCTTGCCACACACCGCTTCATGGCCACAg caactataggacaatggggtagacagtcttgttgttctctggcccattagcaGATAATCGCAAGAAAAAAGAAAGAGTCCCCGACCAGGAGAGAAGGTGGCATGATTTTTCTCTTTTCAAGCTCTCTGATTCTGGGATCAGAGTCAAAATCTCGCCACAGCTACTCCTCACTACACACCTTTTCATGGGTTCCagtgagctaaaccctagctattacttatatcccctgatcctgcatgttcaa Alignment from Spaln_aa2Genome CTGACAATCGGAAAAAGCAG---AGGGTCCCACACCGGGAGAGAAGGCGGCATGATTTCTCTCTGTTCAAGCTTTCAGACTCCGAGATCAGAGTCAAGATCTCGCCACAGCTGCTGCTTGCCACACACCGCTTCATGGCCACAG caactataggacaatggggtagacagtcttgttgttctctggcccattagCAGATAATCGCAAGAAAAAAGAAAGAGTCCCCGACCAGGAGAGAAGGTGGCATGATTTTTCTCTTTTCAAGCTCTCTGATTCTGGGATCAGAGTCAAAATCTCGCCACAGCTACTCCTCACTACACACCTTTTCATGGGTTCCAgtgagctaaaccctagctattacttatatcccctgatcctgcatgttcaa Alignment from Spaln_nt2Genome CTGACAATCG---GAAAAAGCAGAGGGTCCCACACCGGGAGAGAAGGCGGCATGATTTCTCTCTGTTCAAGCTTTCAGACTCCGAGATCAGAGTCAAGATCTCGCCACAGCTGCTGCTTGCCACACACCGCTTCATGGCCACAG caactataggacaatggggtagacagtcttgttgttctctggcccattagCAGATAATCGCAAGAAAAAAGAAAGAGTCCCCGACCAGGAGAGAAGGTGGCATGATTTTTCTCTTTTCAAGCTCTCTGATTCTGGGATCAGAGTCAAAATCTCGCCACAGCTACTCCTCACTACACACCTTTTCATGGGTTCCAgtgagctaaaccctagctattacttatatcccctgatcctgcatgttcaa Alignment from Pairagon CTGACAATCG---GAAAAAGCAGAGGGTCCCACACCGGGAGAGAAGGCGGCATGATTTCTCTCTGTTCAAGCTTTCAGACTCCGAGATCAGAGTCAAGATCTCGCCACAGCTGCTGCTTGCCACACACCGCTTCATGG---CCA caactataggacaatggggtagacagtcttgttgttctctggcccattagCAGATAATCGCAAGAAAAAAGAAAGAGTCCCCGACCAGGAGAGAAGGTGGCATGATTTTTCTCTTTTCAAGCTCTCTGATTCTGGGATCAGAGTCAAAATCTCGCCACAGCTACTCCTCACTACACACCTTTTCATGGGTTCCAgtgagctaaaccctagctattacttatatcccctgatcctgcatgttcaa Alignment from Exonerate_protein2genome CTGACAATCGGAAAAAGCAGAGGGTCCCACACCGGGAGAGAAGGCGGCATGATTTCTCTCTGTTCAAGCTTTCAGACTCCGAGATCAGAGTCAAGATCTCGCCACAGCTGCTGCTTGCCACACACCGCTTCATGGCCACAG caactataggacaatggggtagacagtcttgttgttctctggcccattagcagATAATCGCAAGAAAAAAGAAAGAGTCCCCGACCAGGAGAGAAGGTGGCATGATTTTTCTCTTTTCAAGCTCTCTGATTCTGGGATCAGAGTCAAAATCTCGCCACAGCTACTCCTCACTACACACCTTTTCATGGGTTCCAgtgagctaaaccctagctattacttatatcccctgatcctgcatgttcaa Alignment from Exonerate_coding2genome CTGACAATCGGAAAAAGCAGAGGGTCCCACACCGGGAGAGAAGGCGGCATGATTTCTCTCTGTTCAAGCTTTCAGACTCCGAGATCAGAGTCAAGATCTCGCCACAGCTGCTGCTTGCCACACACCGCTTCATGGCCACAG caactataggacaatggggtagacagtcttgttgttctctggcccattagcagATAATCGCAAGAAAAAAGAAAGAGTCCCCGACCAGGAGAGAAGGTGGCATGATTTTTCTCTTTTCAAGCTCTCTGATTCTGGGATCAGAGTCAAAATCTCGCCACAGCTACTCCTCACTACACACCTTTTCATGGGTTCCAgtgagctaaaccctagctattacttatatcccctgatcctgcatgttcaa Alignment from GeneWise CTGACAATCGGAAAAAG---CAGAGGGTCCCACACCGGGAGAGAAGGCGGCATGATTTCTCTCTGTTCAAGCTTTCAGACTCCGAGATCAGAGTCAAGATCTCGCCACAGCTGCTGCTTGCCACACACCGCTTCATGGCCACAG caactataggacaatggggtagacagtcttgttgttctctggcccattagCAGATAATCGCAAGAAAAAAGAAAGAGTCCCCGACCAGGAGAGAAGGTGGCATGATTTTTCTCTTTTCAAGCTCTCTGATTCTGGGATCAGAGTCAAAATCTCGCCACAGCTACTCCTCACTACACACCTTTTCATGGGTTCCAgtgagctaaaccctagctattacttatatcccctgatcctgcatgttcaa #### Cnnm1_ID8734_6 --> 2 - 1 Original Alignment atAATGACGTGCGGAAGGTTGGAAGTCTGGCTGGATCCTCTGTCTTCc acattacatatgctgcatatatccacaatgtttgtttctgtctgttttagatAATGACTCCCAGAAGGTTGGAAGTCTTGCAGGATCTTCTGTCTTCtgtaagtatctaaagctcctttcacctactgtcccctccaaagtccttctt Alignment from CESAR atAATGACGTGCGGAAGGTTGGAAGTCTGGCTGGATCCTCTGTCTTCc acattacatatgctgcatatatccacaatgtttgtttctgtctgttttagatAATGACTCCCAGAAGGTTGGAAGTCTTGCAGGATCTTCTGTCTTCtgtaagtatctaaagctcctttcacctactgtcccctccaaagtccttctt Alignment from Spaln_aa2Genome ATAATGACGTGCGGAAGGTTGGAAGTCTGGCTGGATCCTCTGTCTTCC acattacatatgctgcatatatccacaatgtttgtttctgtctgttttagATAATGACTCCCAGAAGGTTGGAAGTCTTGCAGGATCTTCTGTCTTCTgtaagtatctaaagctcctttcacctactgtcccctccaaagtccttctt Alignment from Spaln_nt2Genome ATAATGACGTGCGGAAGGTTGGAAGTCTGGCTGGATCCTCTGTCTTCC acattacatatgctgcatatatccacaatgtttgtttctgtctgttttagATAATGACTCCCAGAAGGTTGGAAGTCTTGCAGGATCTTCTGTCTTCTgtaagtatctaaagctcctttcacctactgtcccctccaaagtccttctt Alignment from Pairagon ATAATGACGTGCGGAAGGTTGGAAGTCTGGCTGGATCCTCTGTCTTCC acattacatatgctgcatatatccacaatgtttgtttctgtctgttttagATAATGACTCCCAGAAGGTTGGAAGTCTTGCAGGATCTTCTGTCTTCTgtaagtatctaaagctcctttcacctactgtcccctccaaagtccttctt Alignment from Exonerate_protein2genome ATAATGACGTGCGGAAGGTTGGAAGTCTGGCTGGATCCTCTGTCTTCC acattacatatgctgcatatatccacaatgtttgtttctgtctgttttagATAATGACTCCCAGAAGGTTGGAAGTCTTGCAGGATCTTCTGTCTTCTgtaagtatctaaagctcctttcacctactgtcccctccaaagtccttctt Alignment from Exonerate_coding2genome ATAATGACGTGCGGAAGGTTGGAAGTCTGGCTGGATCCTCTGTCTTCC acattacatatgctgcatatatccacaatgtttgtttctgtctgttttagATAATGACTCCCAGAAGGTTGGAAGTCTTGCAGGATCTTCTGTCTTCTgtaagtatctaaagctcctttcacctactgtcccctccaaagtccttctt Alignment from GeneWise ATAATGACGTGCGGAAGGTTGGAAGTCTGGCTGGATCCTCTGTCTTCC acattacatatgctgcatatatccacaatgtttgtttctgtctgttttagATAATGACTCCCAGAAGGTTGGAAGTCTTGCAGGATCTTCTGTCTTCTgtaagtatctaaagctcctttcacctactgtcccctccaaagtccttctt #### Cnnm1_ID8739_7 --> 2 - 0 Original Alignment taAACCGGTCCCCTTCTCGCTGCAGCGGGTTGAATCGCTCCGAGTCTCCAAACCGAGAGCGCAGTGACTTCGGCGGAAGCAACACGCAACTGTACAGCAGCAGCAACAACCTCTACACACCTGACTACTCGGTGCACATTCTCAGTGATGTGCAGTTCGTGAAG tgaacttttctgtcttcatgtcaccttcacatccgtctgtcctttttcagtaAACCGGTCCCCTTCTTGCTGCAGCGGGTTGAATCGCTCTGAGTCTCCAAACCGAGAGTGCAGTGACTTTGGTGGAAGCAACACACACCTGTACAGCAGCAGCAACAACCTCTACACACCCGACTATTCAGTGCATATTCTCAGTGATGTGCAGTTCGTGAAGgtaagtcctcaaagtggtgattgtaggggctggcattcctgaaagtaaac Alignment from CESAR taAACCGGTCCCCTTCTCGCTGCAGCGGGTTGAATCGCTCCGAGTCTCCAAACCGAGAGCGCAGTGACTTCGGCGGAAGCAACACGCAACTGTACAGCAGCAGCAACAACCTCTACACACCTGACTACTCGGTGCACATTCTCAGTGATGTGCAGTTCGTGAAG tgaacttttctgtcttcatgtcaccttcacatccgtctgtcctttttcagtaAACCGGTCCCCTTCTTGCTGCAGCGGGTTGAATCGCTCTGAGTCTCCAAACCGAGAGTGCAGTGACTTTGGTGGAAGCAACACACACCTGTACAGCAGCAGCAACAACCTCTACACACCCGACTATTCAGTGCATATTCTCAGTGATGTGCAGTTCGTGAAGgtaagtcctcaaagtggtgattgtaggggctggcattcctgaaagtaaac Alignment from Spaln_aa2Genome TAAACCGGTCCCCTTCTCGCTGCAGCGGGTTGAATCGCTCCGAGTCTCCAAACCGAGAGCGCAGTGACTTCGGCGGAAGCAACACGCAACTGTACAGCAGCAGCAACAACCTCTACACACCTGACTACTCGGTGCACATTCTCAGTGATGTGCAGTTCGTGAAG tgaacttttctgtcttcatgtcaccttcacatccgtctgtcctttttcagTAAACCGGTCCCCTTCTTGCTGCAGCGGGTTGAATCGCTCTGAGTCTCCAAACCGAGAGTGCAGTGACTTTGGTGGAAGCAACACACACCTGTACAGCAGCAGCAACAACCTCTACACACCCGACTATTCAGTGCATATTCTCAGTGATGTGCAGTTCGTGAAGgtaagtcctcaaagtggtgattgtaggggctggcattcctgaaagtaaac Alignment from Spaln_nt2Genome TAAACCGGTCCCCTTCTCGCTGCAGCGGGTTGAATCGCTCCGAGTCTCCAAACCGAGAGCGCAGTGACTTCGGCGGAAGCAACACGCAACTGTACAGCAGCAGCAACAACCTCTACACACCTGACTACTCGGTGCACATTCTCAGTGATGTGCAGTTCGTGAAG tgaacttttctgtcttcatgtcaccttcacatccgtctgtcctttttcagTAAACCGGTCCCCTTCTTGCTGCAGCGGGTTGAATCGCTCTGAGTCTCCAAACCGAGAGTGCAGTGACTTTGGTGGAAGCAACACACACCTGTACAGCAGCAGCAACAACCTCTACACACCCGACTATTCAGTGCATATTCTCAGTGATGTGCAGTTCGTGAAGgtaagtcctcaaagtggtgattgtaggggctggcattcctgaaagtaaac Alignment from Pairagon TAAACCGGTCCCCTTCTCGCTGCAGCGGGTTGAATCGCTCCGAGTCTCCAAACCGAGAGCGCAGTGACTTCGGCGGAAGCAACACGCAACTGTACAGCAGCAGCAACAACCTCTACACACCTGACTACTCGGTGCACATTCTCAGTGATGTGCAGTTCGTGAAG tgaacttttctgtcttcatgtcaccttcacatccgtctgtcctttttcagTAAACCGGTCCCCTTCTTGCTGCAGCGGGTTGAATCGCTCTGAGTCTCCAAACCGAGAGTGCAGTGACTTTGGTGGAAGCAACACACACCTGTACAGCAGCAGCAACAACCTCTACACACCCGACTATTCAGTGCATATTCTCAGTGATGTGCAGTTCGTGAAGgtaagtcctcaaagtggtgattgtaggggctggcattcctgaaagtaaac Alignment from Exonerate_protein2genome TAAACCGGTCCCCTTCTCGCTGCAGCGGGTTGAATCGCTCCGAGTCTCCAAACCGAGAGCGCAGTGACTTCGGCGGAAGCAACACGCAACTGTACAGCAGCAGCAACAACCTCTACACACCTGACTACTCGGTGCACATTCTCAGTGATGTGCAGTTCGTGAAG tgaacttttctgtcttcatgtcaccttcacatccgtctgtcctttttcagTAAACCGGTCCCCTTCTTGCTGCAGCGGGTTGAATCGCTCTGAGTCTCCAAACCGAGAGTGCAGTGACTTTGGTGGAAGCAACACACACCTGTACAGCAGCAGCAACAACCTCTACACACCCGACTATTCAGTGCATATTCTCAGTGATGTGCAGTTCGTGAAGgtaagtcctcaaagtggtgattgtaggggctggcattcctgaaagtaaac Alignment from Exonerate_coding2genome TAAACCGGTCCCCTTCTCGCTGCAGCGGGTTGAATCGCTCCGAGTCTCCAAACCGAGAGCGCAGTGACTTCGGCGGAAGCAACACGCAACTGTACAGCAGCAGCAACAACCTCTACACACCTGACTACTCGGTGCACATTCTCAGTGATGTGCAGTTCGTGAAG tgaacttttctgtcttcatgtcaccttcacatccgtctgtcctttttcagTAAACCGGTCCCCTTCTTGCTGCAGCGGGTTGAATCGCTCTGAGTCTCCAAACCGAGAGTGCAGTGACTTTGGTGGAAGCAACACACACCTGTACAGCAGCAGCAACAACCTCTACACACCCGACTATTCAGTGCATATTCTCAGTGATGTGCAGTTCGTGAAGgtaagtcctcaaagtggtgattgtaggggctggcattcctgaaagtaaac Alignment from GeneWise TAAACCGGTCCCCTTCTCGCTGCAGCGGGTTGAATCGCTCCGAGTCTCCAAACCGAGAGCGCAGTGACTTCGGCGGAAGCAACACGCAACTGTACAGCAGCAGCAACAACCTCTACACACCTGACTACTCGGTGCACATTCTCAGTGATGTGCAGTTCGTGAAG tgaacttttctgtcttcatgtcaccttcacatccgtctgtcctttttcagTAAACCGGTCCCCTTCTTGCTGCAGCGGGTTGAATCGCTCTGAGTCTCCAAACCGAGAGTGCAGTGACTTTGGTGGAAGCAACACACACCTGTACAGCAGCAGCAACAACCTCTACACACCCGACTATTCAGTGCATATTCTCAGTGATGTGCAGTTCGTGAAGgtaagtcctcaaagtggtgattgtaggggctggcattcctgaaagtaaac #### Cnnm2_ID10027_5 --> 0 - 1 Original Alignment GGGAAGGTGGAGGTGGAAGCTGGGAAAGAAGGCATGAAGTTTGAAGCCAGCGCTTTCTCCTACTATGGTGTGATGGCCCTCACAGCCTCTCCAg ccttatgtacttacataatgaatttatgtttccttttcccatatctacagGGAAAGGCAGAGGTTGTAGCAGAGAAAGAGGGCATGAAATTTGAGGCCAGTGCCTTCTCCTATCATGGTGTTATGGCACTCACAGCACCTCCAggtatgtctttctgacatatctccacactttatagtaaagggcctaatagc Alignment from CESAR GGGAAGGTGGAGGTGGAAGCTGGGAAAGAAGGCATGAAGTTTGAAGCCAGCGCTTTCTCCTACTATGGTGTGATGGCCCTCACAGCCTCTCCAg ccttatgtacttacataatgaatttatgtttccttttcccatatctacagGGAAAGGCAGAGGTTGTAGCAGAGAAAGAGGGCATGAAATTTGAGGCCAGTGCCTTCTCCTATCATGGTGTTATGGCACTCACAGCACCTCCAggtatgtctttctgacatatctccacactttatagtaaagggcctaatagc Alignment from Spaln_aa2Genome GGGAAGGTGGAGGTGGAAGCTGGGAAAGAAGGCATGAAGTTTGAAGCCAGCGCTTTCTCCTACTATGGTGTGATGGCCCTCACAGCCTCTCCAG ccttatgtacttacataatgaatttatgtttccttttcccatatctacagGGAAAGGCAGAGGTTGTAGCAGAGAAAGAGGGCATGAAATTTGAGGCCAGTGCCTTCTCCTATCATGGTGTTATGGCACTCACAGCACCTCCAGgtatgtctttctgacatatctccacactttatagtaaagggcctaatagc Alignment from Spaln_nt2Genome GGGAAGGTGGAGGTGGAAGCTGGGAAAGAAGGCATGAAGTTTGAAGCCAGCGCTTTCTCCTACTATGGTGTGATGGCCCTCACAGCCTCTCCAG ccttatgtacttacataatgaatttatgtttccttttcccatatctacagGGAAAGGCAGAGGTTGTAGCAGAGAAAGAGGGCATGAAATTTGAGGCCAGTGCCTTCTCCTATCATGGTGTTATGGCACTCACAGCACCTCCAGgtatgtctttctgacatatctccacactttatagtaaagggcctaatagc Alignment from Pairagon GGGAAGGTGGAGGTGGAAGCTGGGAAAGAAGGCATGAAGTTTGAAGCCAGCGCTTTCTCCTACTATGGTGTGATGGCCCTCACAGCCTCTCCAG ccttatgtacttacataatgaatttatgtttccttttcccatatctacagGGAAAGGCAGAGGTTGTAGCAGAGAAAGAGGGCATGAAATTTGAGGCCAGTGCCTTCTCCTATCATGGTGTTATGGCACTCACAGCACCTCCAGgtatgtctttctgacatatctccacactttatagtaaagggcctaatagc Alignment from Exonerate_protein2genome GGGAAGGTGGAGGTGGAAGCTGGGAAAGAAGGCATGAAGTTTGAAGCCAGCGCTTTCTCCTACTATGGTGTGATGGCCCTCACAGCCTCTCCAG ccttatgtacttacataatgaatttatgtttccttttcccatatctacagGGAAAGGCAGAGGTTGTAGCAGAGAAAGAGGGCATGAAATTTGAGGCCAGTGCCTTCTCCTATCATGGTGTTATGGCACTCACAGCACCTCCAGgtatgtctttctgacatatctccacactttatagtaaagggcctaatagc Alignment from Exonerate_coding2genome GGGAAGGTGGAGGTGGAAGCTGGGAAAGAAGGCATGAAGTTTGAAGCCAGCGCTTTCTCCTACTATGGTGTGATGGCCCTCACAGCCTCTCCAG ccttatgtacttacataatgaatttatgtttccttttcccatatctacagGGAAAGGCAGAGGTTGTAGCAGAGAAAGAGGGCATGAAATTTGAGGCCAGTGCCTTCTCCTATCATGGTGTTATGGCACTCACAGCACCTCCAGgtatgtctttctgacatatctccacactttatagtaaagggcctaatagc Alignment from GeneWise GGGAAGGTGGAGGTGGAAGCTGGGAAAGAAGGCATGAAGTTTGAAGCCAGCGCTTTCTCCTACTATGGTGTGATGGCCCTCACAGCCTCTCCAG ccttatgtacttacataatgaatttatgtttccttttcccatatctacagGGAAAGGCAGAGGTTGTAGCAGAGAAAGAGGGCATGAAATTTGAGGCCAGTGCCTTCTCCTATCATGGTGTTATGGCACTCACAGCACCTCCAGgtatgtctttctgacatatctccacactttatagtaaagggcctaatagc #### Col17a1_ID10272_50 --> 2 - 1 Original Alignment ccTACGGCACTATCCCGGGACCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAg aaagatacgaatggtcccagctttaaagactgtttctcctcggtttttagccTATGGTATGATTCCAGGTCCACCTGGC------CGTGATGTAGGGACCCCGGGCCCACAAggtacaaatgccaaatccattgtttagttgagatagtttagttgataacgc Alignment from CESAR ccTACGGCACTATCCCGGGACCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAg aaagatacgaatggtcccagctttaaagactgtttctcctcggtttttagccTATGGTATGATTCCAGGTCCACCTGGCCGT------GATGTAGGGACCCCGGGCCCACAAggtacaaatgccaaatccattgtttagttgagatagtttagttgataacgc Alignment from Spaln_aa2Genome CCTACGGCACTATCCCGGGACCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG aaagatacgaatggtcccagctttaaagactgtttctcctcggtttttagCCTATGGTATGATTCCAGGTCCACCTGGCCGT------GATGTAGGGACCCCGGGCCCACAAGgtacaaatgccaaatccattgtttagttgagatagtttagttgataacgc Alignment from Spaln_nt2Genome CCTACGGCACTATCCCGGGACCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG aaagatacgaatggtcccagctttaaagactgtttctcctcggtttttagCCTATGGTATGATTCCAGGTCCACCTGGCC------GTGATGTAGGGACCCCGGGCCCACAAGgtacaaatgccaaatccattgtttagttgagatagtttagttgataacgc Alignment from Pairagon CCTACGGCACTATCCCGGGACCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG aaagatacgaatggtcccagctttaaagactgtttctcctcggtttttagCCTATGGTATGATTCCAGGTCCACCTGGCC------GTGATGTAGGGACCCCGGGCCCACAAGgtacaaatgccaaatccattgtttagttgagatagtttagttgataacgc Alignment from Exonerate_protein2genome CCTACGGCACTATCCCGGGACCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG aaagatacgaatggtcccagctttaaagactgtttctcctcggtttttagCCTATGGTATGATTCCAGGTCCACCTGGCCGT------GATGTAGGGACCCCGGGCCCACAAGgtacaaatgccaaatccattgtttagttgagatagtttagttgataacgc Alignment from Exonerate_coding2genome aaagatacgaatggtcccagctttaaagactgtttctcctcggtttttagcctatggtatgattccaggtccacctggccgtgatgtagggaccccgggcccacaaggtacaaatgccaaatccattgtttagttgagatagtttagttgataacgc Alignment from GeneWise CCTACGGCACTATCCCGGGACCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG aaagatacgaatggtcccagctttaaagactgtttctcctcggtttttagCCTATGGTATGATTCCAGGTCCACCTGGCCGT------GATGTAGGGACCCCGGGCCCACAAGgtacaaatgccaaatccattgtttagttgagatagtttagttgataacgc #### Col17a1_ID10281_41 --> 2 - 1 Original Alignment gtGATCCTGGTGTCCCAGGTACTCCTGGCATCTCTGGTGGTCTTTCTCATg caacacttaccctagatagaatttgtgttcttcctccttttcttgtataggtGACCCTGGTGTTCCAGGTACCCCTGGTATTTCGGGTGGTCTTTCTCATggtgtggtcctagacaattgatagcaagtacatggagcagtataaatgttc Alignment from CESAR gtGATCCTGGTGTCCCAGGTACTCCTGGCATCTCTGGTGGTCTTTCTCATg caacacttaccctagatagaatttgtgttcttcctccttttcttgtataggtGACCCTGGTGTTCCAGGTACCCCTGGTATTTCGGGTGGTCTTTCTCATggtgtggtcctagacaattgatagcaagtacatggagcagtataaatgttc Alignment from Spaln_aa2Genome GTGATCCTGGTGTCCCAGGTACTCCTGGCATCTCTGGTGGTCTTTCTCATG caacacttaccctagatagaatttgtgttcttcctccttttcttgtatagGTGACCCTGGTGTTCCAGGTACCCCTGGTATTTCGGGTGGTCTTTCTCATGgtgtggtcctagacaattgatagcaagtacatggagcagtataaatgttc Alignment from Spaln_nt2Genome GTGATCCTGGTGTCCCAGGTACTCCTGGCATCTCTGGTGGTCTTTCTCATG caacacttaccctagatagaatttgtgttcttcctccttttcttgtatagGTGACCCTGGTGTTCCAGGTACCCCTGGTATTTCGGGTGGTCTTTCTCATGgtgtggtcctagacaattgatagcaagtacatggagcagtataaatgttc Alignment from Pairagon GTGATCCTGGTGTCCCAGGTACTCCTGGCATCTCTGGTGGTCTTTCTCATG caacacttaccctagatagaatttgtgttcttcctccttttcttgtatagGTGACCCTGGTGTTCCAGGTACCCCTGGTATTTCGGGTGGTCTTTCTCATGgtgtggtcctagacaattgatagcaagtacatggagcagtataaatgttc Alignment from Exonerate_protein2genome GTGATCCTGGTGTCCCAGGTACTCCTGGCATCTCTGGTGGTCTTTCTCATG caacacttaccctagatagaatttgtgttcttcctccttttcttgtatagGTGACCCTGGTGTTCCAGGTACCCCTGGTATTTCGGGTGGTCTTTCTCATGgtgtggtcctagacaattgatagcaagtacatggagcagtataaatgttc Alignment from Exonerate_coding2genome GTGATCCTGGTGTCCCAGGTACTCCTGGCATCTCTGGTGGTCTTTCTCATG caacacttaccctagatagaatttgtgttcttcctccttttcttgtatagGTGACCCTGGTGTTCCAGGTACCCCTGGTATTTCGGGTGGTCTTTCTCATGgtgtggtcctagacaattgatagcaagtacatggagcagtataaatgttc Alignment from GeneWise GTGATCCTGGTGTCCCAGGTACTCCTGGCATCTCTGGTGGTCTTTCTCATG caacacttaccctagatagaatttgtgttcttcctccttttcttgtatagGTGACCCTGGTGTTCCAGGTACCCCTGGTATTTCGGGTGGTCTTTCTCATGgtgtggtcctagacaattgatagcaagtacatggagcagtataaatgttc #### Col17a1_ID10285_37 --> 2 - 1 Original Alignment aaGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAg aggggctacttaatattgttcttgattagtgctaccatgttgctctgcagaaGGGGTTGGTTTACATGGCCCCCCTGGCCCCTCTGGACCACGAGGAGCACCAggcaagccctcactgcaatcgtaatggagggagaagcacagttcctgtgcc Alignment from CESAR aaGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAg aggggctacttaatattgttcttgattagtgctaccatgttgctctgcagaaGGGGTTGGTTTACATGGCCCCCCTGGCCCCTCTGGACCACGAGGAGCACCAggcaagccctcactgcaatcgtaatggagggagaagcacatgcactgactt Alignment from Spaln_aa2Genome AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAG aggggctacttaatattgttcttgattagtgctaccatgttgctctgcagAAGGGGTTGGTTTACATGGCCCCCCTGGCCCCTCTGGACCACGAGGAGCACCAGgcaagccctcactgcaatcgtaatggagggagaagcacagttcctgtgcc Alignment from Spaln_nt2Genome AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAG aggggctacttaatattgttcttgattagtgctaccatgttgctctgcagAAGGGGTTGGTTTACATGGCCCCCCTGGCCCCTCTGGACCACGAGGAGCACCAGgcaagccctcactgcaatcgtaatggagggagaagcacagttcctgtgcc Alignment from Pairagon AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAG aggggctacttaatattgttcttgattagtgctaccatgttgctctgcagAAGGGGTTGGTTTACATGGCCCCCCTGGCCCCTCTGGACCACGAGGAGCACCAGgcaagccctcactgcaatcgtaatggagggagaagcacagttcctgtgcc Alignment from Exonerate_protein2genome aggggctacttaatattgttcttgattagtgctaccatgttgctctgcagaaggggttggtttacatggcccccctggcccctctggaccacgaggagcaccaggcaagccctcactgcaatcgtaatggagggagaagcacagttcctgtgcc Alignment from Exonerate_coding2genome AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAG aggggctacttaatattgttcttgattagtgctaccatgttgctctgcagAAGGGGTTGGTTTACATGGCCCCCCTGGCCCCTCTGGACCACGAGGAGCACCAGgcaagccctcactgcaatcgtaatggagggagaagcacagttcctgtgcc Alignment from GeneWise --CCTGGCCC aggggctacttaatattgttcttgattagtgctaccatgttgctctgcagaaggggttggtttacatggcccccctggcccctctggaccacgaggagcaccaggcaagccctcactgcaatcgtaatggagggagaagcacagTTCCTGTGCC #### Col17a1_ID10295_27 --> 2 - 1 Original Alignment gtGACCAGGGTGAGAAGGGACCCAGAGGCCTCACAg gcaaatcctgtgtgggctttctgggccacgctcctctgttcttcccacaggtGATCAGGGTGGAAAAGGACCACGAGGCCTCACTggtaagcaaggcatcaaaccttttccatggcctgcagttaccagacccctg Alignment from CESAR gtGACCAGGGTGAGAAGGGACCCAGAGGCCTCACAg gcaaatcctgtgtgggctttctgggccacgctcctctgttcttcccacaggtGATCAGGGTGGAAAAGGACCACGAGGCCTCACTggtaagcaaggcatcaaaccttttccatggcctgcagttaccagacccctg Alignment from Spaln_aa2Genome GTGACCAGGGTGAGAAGGGACCCAGAGGCCTCACAG gcaaatcctgtgtgggctttctgggccacgctcctctgttcttcccacagGTGATCAGGGTGGAAAAGGACCACGAGGCCTCACTGgtaagcaaggcatcaaaccttttccatggcctgcagttaccagacccctg Alignment from Spaln_nt2Genome GTGACCAGGGTGAGAAGGGACCCAGAGGCCTCACAG gcaaatcctgtgtgggctttctgggccacgctcctctgttcttcccacagGTGATCAGGGTGGAAAAGGACCACGAGGCCTCACTGgtaagcaaggcatcaaaccttttccatggcctgcagttaccagacccctg Alignment from Pairagon GTGACCAGGGTGAGAAGGGACCCAGAGGCCTCACAG gcaaatcctgtgtgggctttctgggccacgctcctctgttcttcccacagGTGATCAGGGTGGAAAAGGACCACGAGGCCTCACTGgtaagcaaggcatcaaaccttttccatggcctgcagttaccagacccctg Alignment from Exonerate_protein2genome GTGACCAGGGTGAGAAGGGACCCAGAGGCCTCACAG gcaaatcctgtgtgggctttctgggccacgctcctctgttcttcccacagGTGATCAGGGTGGAAAAGGACCACGAGGCCTCACTGgtaagcaaggcatcaaaccttttccatggcctgcagttaccagacccctg Alignment from Exonerate_coding2genome gcaaatcctgtgtgggctttctgggccacgctcctctgttcttcccacaggtgatcagggtggaaaaggaccacgaggcctcactggtaagcaaggcatcaaaccttttccatggcctgcagttaccagacccctg Alignment from GeneWise gcaaatcctgtgtgggctttctgggccacgctcctctgttcttcccacaggtgatcagggtggaaaaggaccacgaggcctcactggtaagcaaggcatcaaaccttttccatggcctgcagttaccagacccctg #### Col17a1_ID10296_26 --> 2 - 1 Original Alignment gtGACAAAGGACTCATGGGACCACCAGGACCCAAAg tgtttacaaaacagacgggccactgacagacttgtccatatgtcttacaggaGATAAAGGCCTGATAGGGCTGGCTGGGCCTAAGggtatgtagtacctcaggcttgtaaggtctctactgagctactgagaatct Alignment from CESAR gtGACAAAGGACTCATGGGACCACCAGGACCCAAAg tgtttacaaaacagacgggccactgacagacttgtccatatgtcttacaggaGATAAAGGCCTGATAGGGCTGGCTGGGCCTAAGggtatgtagtacctcaggcttgtaaggtctctactgagctactgagaatct Alignment from Spaln_aa2Genome GTGACAAAGGACTCATGGGACCACCAGGACCCAAAG tgtttacaaaacagacgggccactgacagacttgtccatatgtcttacagGAGATAAAGGCCTGATAGGGCTGGCTGGGCCTAAGGgtatgtagtacctcaggcttgtaaggtctctactgagctactgagaatct Alignment from Spaln_nt2Genome GTGACAAAGGACTCATGGGACCACCAGGACCCAAAG tgtttacaaaacagacgggccactgacagacttgtccatatgtcttacagGAGATAAAGGCCTGATAGGGCTGGCTGGGCCTAAGGgtatgtagtacctcaggcttgtaaggtctctactgagctactgagaatct Alignment from Pairagon GTGACAAAGGACTCATGGGACCACCAGGACCCAAAG tgtttacaaaacagacgggccactgacagacttgtccatatgtcttacagGAGATAAAGGCCTGATAGGGCTGGCTGGGCCTAAGGgtatgtagtacctcaggcttgtaaggtctctactgagctactgagaatct Alignment from Exonerate_protein2genome GTGACAAAGGACTCATGGGACCACCAGGACCCAAAG tgtttacaaaacagacgggccactgacagacttgtccatatgtcttacagGAGATAAAGGCCTGATAGGGCTGGCTGGGCCTAAGGgtatgtagtacctcaggcttgtaaggtctctactgagctactgagaatct Alignment from Exonerate_coding2genome tgtttacaaaacagacgggccactgacagacttgtccatatgtcttacaggagataaaggcctgatagggctggctgggcctaagggtatgtagtacctcaggcttgtaaggtctctactgagctactgagaatct Alignment from GeneWise tgtttacaaaacagacgggccactgacagacttgtccatatgtcttacaggagataaaggcctgatagggctggctgggcctaagggtatgtagtacctcaggcttgtaaggtctctactgagctactgagaatct #### Col17a1_ID10298_24 --> 2 - 1 Original Alignment gtCACAGCGGCTCTCCTGGTCCCCAAGGCCCCCCAg taatgtgctatctgtgccttgcttatgcctcttgctcacttcttctgcaggtCACAGTGGGTCTCCTGGACCCCAAGGTCCCCCAggtaagtgtctctttctttccagtgatagagataggttaacggaaacatct Alignment from CESAR gtCACAGCGGCTCTCCTGGTCCCCAAGGCCCCCCAg taatgtgctatctgtgccttgcttatgcctcttgctcacttcttctgcaggtCACAGTGGGTCTCCTGGACCCCAAGGTCCCCCAggtaagtgtctctttctttccagtgatagagataggttaacggaaacatct Alignment from Spaln_aa2Genome GTCACAGCGGCTCTCCTGGTCCCCAAGGCCCCCCAG taatgtgctatctgtgccttgcttatgcctcttgctcacttcttctgcagGTCACAGTGGGTCTCCTGGACCCCAAGGTCCCCCAGgtaagtgtctctttctttccagtgatagagataggttaacggaaacatct Alignment from Spaln_nt2Genome GTCACAGCGGCTCTCCTGGTCCCCAAGGCCCCCCAG taatgtgctatctgtgccttgcttatgcctcttgctcacttcttctgcagGTCACAGTGGGTCTCCTGGACCCCAAGGTCCCCCAGgtaagtgtctctttctttccagtgatagagataggttaacggaaacatct Alignment from Pairagon GTCACAGCGGCTCTCCTGGTCCCCAAGGCCCCCCAG taatgtgctatctgtgccttgcttatgcctcttgctcacttcttctgcagGTCACAGTGGGTCTCCTGGACCCCAAGGTCCCCCAGgtaagtgtctctttctttccagtgatagagataggttaacggaaacatct Alignment from Exonerate_protein2genome GTCACAGCGGCTCTCCTGGTCCCCAAGGCCCCCCAG taatgtgctatctgtgccttgcttatgcctcttgctcacttcttctgcagGTCACAGTGGGTCTCCTGGACCCCAAGGTCCCCCAGgtaagtgtctctttctttccagtgatagagataggttaacggaaacatct Alignment from Exonerate_coding2genome taatgtgctatctgtgccttgcttatgcctcttgctcacttcttctgcaggtcacagtgggtctcctggaccccaaggtcccccaggtaagtgtctctttctttccagtgatagagataggttaacggaaacatct Alignment from GeneWise GTCACAGCGGCTCTCCTGGTCCCCAAGGCCCCCCAG taatgtgctatctgtgccttgcttatgcctcttgctcacttcttctgcagGTCACAGTGGGTCTCCTGGACCCCAAGGTCCCCCAGgtaagtgtctctttctttccagtgatagagataggttaacggaaacatct #### Col17a1_ID10300_22 --> 2 - 1 Original Alignment gaGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAg aactattctgtactgttgcatctttcttttcttttctcacgggagtttaggaGACCCAGGCATGGAAGCACCAATAGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCCAGCGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAggtgggagtcactatcaacactataatgtggtgacctgcatctgttcattt Alignment from CESAR gaGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAg aactattctgtactgttgcatctttcttttcttttctcacgggagtttaggaGACCCAGGCATGGAAGCACCAATAGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCCAGCGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAggtgggagtcactatcaacactataatgtggtgacctgcatctgttcattt Alignment from Spaln_aa2Genome GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG aactattctgtactgttgcatctttcttttcttttctcacgggagtttagGAGACCCAGGCATGGAAGCACCAATAGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCCAGCGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAGgtgggagtcactatcaacactataatgtggtgacctgcatctgttcattt Alignment from Spaln_nt2Genome GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG aactattctgtactgttgcatctttcttttcttttctcacgggagtttagGAGACCCAGGCATGGAAGCACCAATAGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCCAGCGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAGgtgggagtcactatcaacactataatgtggtgacctgcatctgttcattt Alignment from Pairagon GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG aactattctgtactgttgcatctttcttttcttttctcacgggagtttagGAGACCCAGGCATGGAAGCACCAATAGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCCAGCGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAGgtgggagtcactatcaacactataatgtggtgacctgcatctgttcattt Alignment from Exonerate_protein2genome GGCAGCATTGGAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG aactattctgtactgttgcatctttcttttcttttctcacGGGAGTTTAGGAGACCCAGGCATGGAAGCACCAATAGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCCAGCGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAGgtgggagtcactatcaacactataatgtggtgacctgcatctgttcattt Alignment from Exonerate_coding2genome GGCAGCATTGGAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG aactattctgtactgttgcatctttcttttcttttctcacGGGAGTTTAGGAGACCCAGGCATGGAAGCACCAATAGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCCAGCGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAGgtgggagtcactatcaacactataatgtggtgacctgcatctgttcattt Alignment from GeneWise GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG aactattctgtactgttgcatctttcttttcttttctcacgggagtttagGAGACCCAGGCATGGAAGCACCAATAGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCCAGCGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAGgtgggagtcactatcaacactataatgtggtgacctgcatctgttcattt #### Col17a1_ID10308_14 --> 2 - 1 Original Alignment ctTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATg ataaggatataaggacagtgcgcttaagtaccatttttttaatctcatagcaTCTTTCTCAGAAGAGACATTGAAAAAGGAGAAGCAGGCAGCATATGCTGCTGACACCTGCCTCAAGGCAGATGTGAATggtggggtaatagtaactactgcatgcacaaatctgcaccttatttttctc Alignment from CESAR ctTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATg ataaggatataaggacagtgcgcttaagtaccatttttttaatctcatagcaTCTTTCTCAGAAGAGACATTGAAAAAGGAGAAGCAGGCAGCATATGCTGCTGACACCTGCCTCAAGGCAGATGTGAATggtggggtaatagtaactactgcatgcacaaatctgcaccttatttttctc Alignment from Spaln_aa2Genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG ataaggatataaggacagtgcgcttaagtaccatttttttaatctcatagCATCTTTCTCAGAAGAGACATTGAAAAAGGAGAAGCAGGCAGCATATGCTGCTGACACCTGCCTCAAGGCAGATGTGAATGgtggggtaatagtaactactgcatgcacaaatctgcaccttatttttctc Alignment from Spaln_nt2Genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG ataaggatataaggacagtgcgcttaagtaccatttttttaatctcatagCATCTTTCTCAGAAGAGACATTGAAAAAGGAGAAGCAGGCAGCATATGCTGCTGACACCTGCCTCAAGGCAGATGTGAATGgtggggtaatagtaactactgcatgcacaaatctgcaccttatttttctc Alignment from Pairagon CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG ataaggatataaggacagtgcgcttaagtaccatttttttaatctcatagCATCTTTCTCAGAAGAGACATTGAAAAAGGAGAAGCAGGCAGCATATGCTGCTGACACCTGCCTCAAGGCAGATGTGAATGgtggggtaatagtaactactgcatgcacaaatctgcaccttatttttctc Alignment from Exonerate_protein2genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG ataaggatataaggacagtgcgcttaagtaccatttttttaatctcatagCATCTTTCTCAGAAGAGACATTGAAAAAGGAGAAGCAGGCAGCATATGCTGCTGACACCTGCCTCAAGGCAGATGTGAATGgtggggtaatagtaactactgcatgcacaaatctgcaccttatttttctc Alignment from Exonerate_coding2genome ataaggatataaggacagtgcgcttaagtaccatttttttaatctcatagcatctttctcagaagagacattgaaaaaggagaagcaggcagcatatgctgctgacacctgcctcaaggcagatgtgaatggtggggtaatagtaactactgcatgcacaaatctgcaccttatttttctc Alignment from GeneWise CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG ataaggatataaggacagtgcgcttaagtaccatttttttaatctcatagCATCTTTCTCAGAAGAGACATTGAAAAAGGAGAAGCAGGCAGCATATGCTGCTGACACCTGCCTCAAGGCAGATGTGAATGgtggggtaatagtaactactgcatgcacaaatctgcaccttatttttctc #### Col17a1_ID10313_9 --> 2 - 1 Original Alignment tgTCCGGAACCTATGATTCAGCAATACTGGACACCAACTTTCCGCCCCACATGTGGTCCTCCACCTTGCCTGCAGGGTCCTCCCTGGGGACCTATCAGAACAACATAACAGCCCAGAGCACATCCCTCCTCAACACCAATGCCTACTCAACGGGATCAg gatgagtaagatgacttctcagtgaacactgccctattctttgatttcagtcTCTGGATCTTATGATTCAGCACTCTTGGACACAAATTTTCCACCCCACACATGGTCCTCCACCTTGCCTACTGGGTCCTCCTTGGCAACATATCAGAATAATATAACAGCCCAAAGCACATCACTTCTGAACACCAACGCCTACTCAACTGGGTCTggtcagtgtagtggtgtcagcatcattggaatctgtgctattcctaggtcc Alignment from CESAR tgTCCGGAACCTATGATTCAGCAATACTGGACACCAACTTTCCGCCCCACATGTGGTCCTCCACCTTGCCTGCAGGGTCCTCCCTGGGGACCTATCAGAACAACATAACAGCCCAGAGCACATCCCTCCTCAACACCAATGCCTACTCAACGGGATCAg gatgagtaagatgacttctcagtgaacactgccctattctttgatttcagtcTCTGGATCTTATGATTCAGCACTCTTGGACACAAATTTTCCACCCCACACATGGTCCTCCACCTTGCCTACTGGGTCCTCCTTGGCAACATATCAGAATAATATAACAGCCCAAAGCACATCACTTCTGAACACCAACGCCTACTCAACTGGGTCTggtcagtgtagtggtgtcagcatcattggaatctgtgctattcctaggtcc Alignment from Spaln_aa2Genome TGTCCGGAACCTATGATTCAGCAATACTGGACACCAACTTTCCGCCCCACATGTGGTCCTCCACCTTGCCTGCAGGGTCCTCCCTGGGGACCTATCAGAACAACATAACAGCCCAGAGCACATCCCTCCTCAACACCAATGCCTACTCAACGGGATCAG gatgagtaagatgacttctcagtgaacactgccctattctttgatttcagTCTCTGGATCTTATGATTCAGCACTCTTGGACACAAATTTTCCACCCCACACATGGTCCTCCACCTTGCCTACTGGGTCCTCCTTGGCAACATATCAGAATAATATAACAGCCCAAAGCACATCACTTCTGAACACCAACGCCTACTCAACTGGGTCTGgtcagtgtagtggtgtcagcatcattggaatctgtgctattcctaggtcc Alignment from Spaln_nt2Genome TGTCCGGAACCTATGATTCAGCAATACTGGACACCAACTTTCCGCCCCACATGTGGTCCTCCACCTTGCCTGCAGGGTCCTCCCTGGGGACCTATCAGAACAACATAACAGCCCAGAGCACATCCCTCCTCAACACCAATGCCTACTCAACGGGATCAG gatgagtaagatgacttctcagtgaacactgccctattctttgatttcagTCTCTGGATCTTATGATTCAGCACTCTTGGACACAAATTTTCCACCCCACACATGGTCCTCCACCTTGCCTACTGGGTCCTCCTTGGCAACATATCAGAATAATATAACAGCCCAAAGCACATCACTTCTGAACACCAACGCCTACTCAACTGGGTCTGgtcagtgtagtggtgtcagcatcattggaatctgtgctattcctaggtcc Alignment from Pairagon TGTCCGGAACCTATGATTCAGCAATACTGGACACCAACTTTCCGCCCCACATGTGGTCCTCCACCTTGCCTGCAGGGTCCTCCCTGGGGACCTATCAGAACAACATAACAGCCCAGAGCACATCCCTCCTCAACACCAATGCCTACTCAACGGGATCAG gatgagtaagatgacttctcagtgaacactgccctattctttgatttcagTCTCTGGATCTTATGATTCAGCACTCTTGGACACAAATTTTCCACCCCACACATGGTCCTCCACCTTGCCTACTGGGTCCTCCTTGGCAACATATCAGAATAATATAACAGCCCAAAGCACATCACTTCTGAACACCAACGCCTACTCAACTGGGTCTGgtcagtgtagtggtgtcagcatcattggaatctgtgctattcctaggtcc Alignment from Exonerate_protein2genome TGTCCGGAACCTATGATTCAGCAATACTGGACACCAACTTTCCGCCCCACATGTGGTCCTCCACCTTGCCTGCAGGGTCCTCCCTGGGGACCTATCAGAACAACATAACAGCCCAGAGCACATCCCTCCTCAACACCAATGCCTACTCAACGGGATCAG gatgagtaagatgacttctcagtgaacactgccctattctttgatttcagTCTCTGGATCTTATGATTCAGCACTCTTGGACACAAATTTTCCACCCCACACATGGTCCTCCACCTTGCCTACTGGGTCCTCCTTGGCAACATATCAGAATAATATAACAGCCCAAAGCACATCACTTCTGAACACCAACGCCTACTCAACTGGGTCTGgtcagtgtagtggtgtcagcatcattggaatctgtgctattcctaggtcc Alignment from Exonerate_coding2genome ACAGTGACAGCGAGCTCCCACTCAGTGTCCGGAACCTATGATTCAGCAATACTGGACACCAACTTTCCGCCCCACATGTGGTCCTCCACCTTGCCTGCAGGGTCCTCCCTGGGGACCTATCAGAACAACATAACAGCCCAGAGCACATCCCTCCTCAACACCAATGCCTACTCAACGGGATCAG gatgagtaagatgacttctcagtgaACACTGCCCTATTCTTTGATTTCAGTCTCTGGATCTTATGATTCAGCACTCTTGGACACAAATTTTCCACCCCACACATGGTCCTCCACCTTGCCTACTGGGTCCTCCTTGGCAACATATCAGAATAATATAACAGCCCAAAGCACATCACTTCTGAACACCAACGCCTACTCAACTGGGTCTGgtcagtgtagtggtgtcagcatcattggaatctgtgctattcctaggtcc Alignment from GeneWise TGTCCGGAACCTATGATTCAGCAATACTGGACACCAACTTTCCGCCCCACATGTGGTCCTCCACCTTGCCTGCAGGGTCCTCCCTGGGGACCTATCAGAACAACATAACAGCCCAGAGCACATCCCTCCTCAACACCAATGCCTACTCAACGGGATCAG gatgagtaagatgacttctcagtgaacactgccctattctttgatttcagTCTCTGGATCTTATGATTCAGCACTCTTGGACACAAATTTTCCACCCCACACATGGTCCTCCACCTTGCCTACTGGGTCCTCCTTGGCAACATATCAGAATAATATAACAGCCCAAAGCACATCACTTCTGAACACCAACGCCTACTCAACTGGGTCTGgtcagtgtagtggtgtcagcatcattggaatctgtgctattcctaggtcc #### Col17a1_ID10319_3 --> 2 - 1 Original Alignment aaGGGAGCACCAGCAATGGATATGCTAAGACAGGCTCTCTGGGTGGAGGAAGTCGGTTGGAGAAGCAGAGCTTGACCCATGGCAGCAGCGGCTACATCAACTCAa tgaagctattatctcactaacaccatagcctgcaatgttctgtgttccaggaGTGAGTACA---AATGGATATGCGCAAAAAGGATCATTGGGTGGTGGAAGTCGCTTAGAAAAACAAAGCTTT------GGCAGTAGTGGCTATATCAATTCAagtgactgaaccacaagacaatggggatgaactgatctgcgttagagtggg Alignment from CESAR aaGGGAGCACCAGCAATGGATATGCTAAGACAGGCTCTCTGGGTGGAGGAAGTCGGTTGGAGAAGCAGAGCTTGACCCATGGCAGCAGCGGCTACATCAACTCAa tgaagctattatctcactaacaccatagcctgcaatgttctgtgttccaggaGTGAGTACA---AATGGATATGCGCAAAAAGGATCATTGGGTGGTGGAAGTCGCTTAGAAAAACAAAGCTTT------GGCAGTAGTGGCTATATCAATTCAagtgactgaaccacaagacaatggggatgaactgatctgcgttagagtggg Alignment from Spaln_aa2Genome AAGGGAGCACCAGCAATGGATATGCTAAGACAGGCTCTCTGGGTGGAGGAAGTCGGTTGGAGAAGCAGAGCTTGACCCATGGCAGCAGCGGCTACATCAACTCAA tgaagctattatctcactaacaccatagcctgcaatgttctgtgttccagGAGTGAGTACA---AATGGATATGCGCAAAAAGGATCATTGGGTGGTGGAAGTCGCTTAGAAAAACAAAGCTTT------GGCAGTAGTGGCTATATCAATTCAAgtgactgaaccacaagacaatggggatgaactgatctgcgttagagtggg Alignment from Spaln_nt2Genome AAGGGAGCACCAGCAATGGATATGCTAAGACAGGCTCTCTGGGTGGAGGAAGTCGGTTGGAGAAGCAGAGCTTGACCCATGGCAGCAGCGGCTACATCAACTCAA tgaagctattatctcactaacaccatagcctgcaatgttctgtgttccagGAGTGAGTAC---AAATGGATATGCGCAAAAAGGATCATTGGGTGGTGGAAGTCGCTTAGAAAAACAAAGCTT------TGGCAGTAGTGGCTATATCAATTCAAgtgactgaaccacaagacaatggggatgaactgatctgcgttagagtggg Alignment from Pairagon AAGGGAGCACCAGCAATGGATATGCTAAGACAGGCTCTCTGGGTGGAGGAAGTCGGTTGGAGAAGCAGAGCTTGACCCATGGCAGCAGCGGCTACATCAACTCAA tgaagctattatctcactaacaccatagcctgcaatgttctgtgttccagGAGTGAGTAC---AAATGGATATGCGCAAAAAGGATCATTGGGTGGTGGAAGTCGCTTAGAAAAACAAAGCTT------TGGCAGTAGTGGCTATATCAATTCAAgtgactgaaccacaagacaatggggatgaactgatctgcgttagagtggg Alignment from Exonerate_protein2genome AAGGGAGCACCAGCAATGGATATGCTAAGACAGGCTCTCTGGGTGGAGGAAGTCGGTTGGAGAAGCAGAGCTTGACCCATGGCAGCAGCGGCTACATCAACTCAA tgaagctattatctcactaacaccatagcctgcaatgttctgtgttccagGAGTGAGTACA---AATGGATATGCGCAAAAAGGATCATTGGGTGGTGGAAGTCGCTTAGAAAAACAAAGCTTT------GGCAGTAGTGGCTATATCAATTCAAgtgactgaaccacaagacaatggggatgaactgatctgcgttagagtggg Alignment from Exonerate_coding2genome tgaagctattatctcactaacaccatagcctgcaatgttctgtgttccaggagtgagtacaaatggatatgcgcaaaaaggatcattgggtggtggaagtcgcttagaaaaacaaagctttggcagtagtggctatatcaattcaagtgactgaaccacaagacaatggggatgaactgatctgcgttagagtggg Alignment from GeneWise AAGGGAGCACCAGCAATGGATATGCTAAGACAGGCTCTCTGGGTGGAGGAAGTCGGTTGGAGAAGCAGAGCTTGACCCATGGCAGCAGCGGCTACATCAACTCAA tgaagctattatctcactaacaccatagcctgcaatgttctgtgttccagGAGTGAGTACA---AATGGATATGCGCAAAAAGGATCATTGGGTGGTGGAAGTCGCTTAGAAAAACAAAGCTTT------GGCAGTAGTGGCTATATCAATTCAAgtgactgaaccacaagacaatggggatgaactgatctgcgttagagtggg #### Coro1b_ID359_9 --> 0 - 0 Original Alignment TCTGACCTCTTCCAGGATGATCTGTACCCTGACACAGCCGGGCCTGAGGCTGCTCTTGAAGCAGAGGATTGGGTGAGCGGTCAGGATGCTAATCCAATCCTCATCTCACTACGGGAAGCCTATGTGCCCAGTAAACAACGGGACCTGAAGGTCAGCCGGCGCAACGTGCTATCAGACAGCAGGCCTGCCAGTTACAGCCGCTCCGGAGCCTCCACAGCTACTGCAGTTACTGATGTCCCCAGTGGCAACCTTGCTGGGGCTGGT ttagtccctggtccctgacctgcattgttaacattgctgtctgcttgcagTCTGACCTCTACCAGGATGATCTGTACCCT---------GTGCCCGAGGCTCTGCTTGGAGCAAAGGATTGGGTAAGCAGTCAGGATGCTAATCCAAATTTCATCCCACTGCAAGAAGCCTATATACCAAGTAAACAACACGACTTAAAAGGTAGCCGGCACAATGTGCTCTCAGATAGCCGACCAGCCAGCTACAGCCGTTTTGGCTCCTCTACAGCTACAGCAATTACAGATGTGCCCAGTGGTAATTTTGCTGGTGCTGGTgtaagacactctttaaagatctgttgctcagacactgagaacatgccctg Alignment from CESAR TCTGACCTCTTCCAGGATGATCTGTACCCTGACACAGCCGGGCCTGAGGCTGCTCTTGAAGCAGAGGATTGGGTGAGCGGTCAGGATGCTAATCCAATCCTCATCTCACTACGGGAAGCCTATGTGCCCAGTAAACAACGGGACCTGAAGGTCAGCCGGCGCAACGTGCTATCAGACAGCAGGCCTGCCAGTTACAGCCGCTCCGGAGCCTCCACAGCTACTGCAGTTACTGATGTCCCCAGTGGCAACCTTGCTGGGGCTGGT ttagtccctggtccctgacctgcattgttaacattgctgtctgcttgcagTCTGACCTCTACCAGGATGATCTGTACCCT---------GTGCCCGAGGCTCTGCTTGGAGCAAAGGATTGGGTAAGCAGTCAGGATGCTAATCCAAATTTCATCCCACTGCAAGAAGCCTATATACCAAGTAAACAACACGACTTAAAAGGTAGCCGGCACAATGTGCTCTCAGATAGCCGACCAGCCAGCTACAGCCGTTTTGGCTCCTCTACAGCTACAGCAATTACAGATGTGCCCAGTGGTAATTTTGCTGGTGCTGGTgtaagacactctttaaagatctgttgctcagacactgagaacatgccctg Alignment from Spaln_aa2Genome TCTGACCTCTTCCAGGATGATCTGTACCCTGACACAGCCGGGCCTGAGGCTGCTCTTGAAGCAGAGGATTGGGTGAGCGGTCAGGATGCTAATCCAATCCTCATCTCACTACGGGAAGCCTATGTGCCCAGTAAACAACGGGACCTGAAGGTCAGCCGGCGCAACGTGCTATCAGACAGCAGGCCTGCCAGTTACAGCCGCTCCGGAGCCTCCACAGCTACTGCAGTTACTGATGTCCCCAGTGGCAACCTTGCTGGGGCTGGT ttagtccctggtccctgacctgcattgttaacattgctgtctgcttgcagTCTGACCTCTACCAGGATGATCTGTACCCT---------GTGCCCGAGGCTCTGCTTGGAGCAAAGGATTGGGTAAGCAGTCAGGATGCTAATCCAAATTTCATCCCACTGCAAGAAGCCTATATACCAAGTAAACAACACGACTTAAAAGGTAGCCGGCACAATGTGCTCTCAGATAGCCGACCAGCCAGCTACAGCCGTTTTGGCTCCTCTACAGCTACAGCAATTACAGATGTGCCCAGTGGTAATTTTGCTGGTGCTGGTgtaagacactctttaaagatctgttgctcagacactgagaacatgccctg Alignment from Spaln_nt2Genome TCTGACCTCTTCCAGGATGATCTGTACCCTGACACAGCCGGGCCTGAGGCTGCTCTTGAAGCAGAGGATTGGGTGAGCGGTCAGGATGCTAATCCAATCCTCATCTCACTACGGGAAGCCTATGTGCCCAGTAAACAACGGGACCTGAAGGTCAGCCGGCGCAACGTGCTATCAGACAGCAGGCCTGCCAGTTACAGCCGCTCCGGAGCCTCCACAGCTACTGCAGTTACTGATGTCCCCAGTGGCAACCTTGCTGGGGCTGGT ttagtccctggtccctgacctgcattgttaacattgctgtctgcttgcagTCTGACCTCTACCAGGATGATCTGTACCCT---------GTGCCCGAGGCTCTGCTTGGAGCAAAGGATTGGGTAAGCAGTCAGGATGCTAATCCAAATTTCATCCCACTGCAAGAAGCCTATATACCAAGTAAACAACACGACTTAAAAGGTAGCCGGCACAATGTGCTCTCAGATAGCCGACCAGCCAGCTACAGCCGTTTTGGCTCCTCTACAGCTACAGCAATTACAGATGTGCCCAGTGGTAATTTTGCTGGTGCTGGTgtaagacactctttaaagatctgttgctcagacactgagaacatgccctg Alignment from Pairagon TCTGACCTCTTCCAGGATGATCTGTACCCTGACACAGCCGGGCCTGAGGCTGCTCTTGAAGCAGAGGATTGGGTGAGCGGTCAGGATGCTAATCCAATCCTCATCTCACTACGGGAAGCCTATGTGCCCAGTAAACAACGGGACCTGAAGGTCAGCCGGCGCAACGTGCTATCAGACAGCAGGCCTGCCAGTTACAGCCGCTCCGGAGCCTCCACAGCTACTGCAGTTACTGATGTCCCCAGTGGCAACCTTGCTGGGGCTGGT ttagtccctggtccctgacctgcattgttaacattgctgtctgcttgcagTCTGACCTCTACCAGGATGATCTGTACCCT---------GTGCCCGAGGCTCTGCTTGGAGCAAAGGATTGGGTAAGCAGTCAGGATGCTAATCCAAATTTCATCCCACTGCAAGAAGCCTATATACCAAGTAAACAACACGACTTAAAAGGTAGCCGGCACAATGTGCTCTCAGATAGCCGACCAGCCAGCTACAGCCGTTTTGGCTCCTCTACAGCTACAGCAATTACAGATGTGCCCAGTGGTAATTTTGCTGGTGCTGGTgtaagacactctttaaagatctgttgctcagacactgagaacatgccctg Alignment from Exonerate_protein2genome TCTGACCTCTTCCAGGATGATCTGTACCCTGACACAGCCGGGCCTGAGGCTGCTCTTGAAGCAGAGGATTGGGTGAGCGGTCAGGATGCTAATCCAATCCTCATCTCACTACGGGAAGCCTATGTGCCCAGTAAACAACGGGACCTGAAGGTCAGCCGGCGCAACGTGCTATCAGACAGCAGGCCTGCCAGTTACAGCCGCTCCGGAGCCTCCACAGCTACTGCAGTTACTGATGTCCCCAGTGGCAACCTTGCTGGGGCTGGT ttagtccctggtccctgacctgcattgttaacattgctgtctgcttgcagTCTGACCTCTACCAGGATGATCTGTACCCT---------GTGCCCGAGGCTCTGCTTGGAGCAAAGGATTGGGTAAGCAGTCAGGATGCTAATCCAAATTTCATCCCACTGCAAGAAGCCTATATACCAAGTAAACAACACGACTTAAAAGGTAGCCGGCACAATGTGCTCTCAGATAGCCGACCAGCCAGCTACAGCCGTTTTGGCTCCTCTACAGCTACAGCAATTACAGATGTGCCCAGTGGTAATTTTGCTGGTGCTGGTgtaagacactctttaaagatctgttgctcagacactgagaacatgccctg Alignment from Exonerate_coding2genome TCTGACCTCTTCCAGGATGATCTGTACCCTGACACAGCCGGGCCTGAGGCTGCTCTTGAAGCAGAGGATTGGGTGAGCGGTCAGGATGCTAATCCAATCCTCATCTCACTACGGGAAGCCTATGTGCCCAGTAAACAACGGGACCTGAAGGTCAGCCGGCGCAACGTGCTATCAGACAGCAGGCCTGCCAGTTACAGCCGCTCCGGAGCCTCCACAGCTACTGCAGTTACTGATGTCCCCAGTGGCAACCTTGCTGGGGCTGGT ttagtccctggtccctgacctgcattgttaacattgctgtctgcttgcagTCTGACCTCTACCAGGATGATCTGTACCCT---------GTGCCCGAGGCTCTGCTTGGAGCAAAGGATTGGGTAAGCAGTCAGGATGCTAATCCAAATTTCATCCCACTGCAAGAAGCCTATATACCAAGTAAACAACACGACTTAAAAGGTAGCCGGCACAATGTGCTCTCAGATAGCCGACCAGCCAGCTACAGCCGTTTTGGCTCCTCTACAGCTACAGCAATTACAGATGTGCCCAGTGGTAATTTTGCTGGTGCTGGTgtaagacactctttaaagatctgttgctcagacactgagaacatgccctg Alignment from GeneWise TCTGACCTCTTCCAGGATGATCTGTACCCTGACACAGCCGGGCCTGAGGCTGCTCTTGAAGCAGAGGATTGGGTGAGCGGTCAGGATGCTAATCCAATCCTCATCTCACTACGGGAAGCCTATGTGCCCAGTAAACAACGGGACCTGAAGGTCAGCCGGCGCAACGTGCTATCAGACAGCAGGCCTGCCAGTTACAGCCGCTCCGGAGCCTCCACAGCTACTGCAGTTACTGATGTCCCCAGTGGCAACCTTGCTGGGGCTGGT ttagtccctggtccctgacctgcattgttaacattgctgtctgcttgcagTCTGACCTCTACCAGGATGATCTGTACCCTGTG---------CCCGAGGCTCTGCTTGGAGCAAAGGATTGGGTAAGCAGTCAGGATGCTAATCCAAATTTCATCCCACTGCAAGAAGCCTATATACCAAGTAAACAACACGACTTAAAAGGTAGCCGGCACAATGTGCTCTCAGATAGCCGACCAGCCAGCTACAGCCGTTTTGGCTCCTCTACAGCTACAGCAATTACAGATGTGCCCAGTGGTAATTTTGCTGGTGCTGGTgtaagacactctttaaagatctgttgctcagacactgagaacatgccctg #### Cpeb3_ID7269_8 --> 0 - 1 Original Alignment GTGCAAATCCGACCGTGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTg gtaggataaagtatatgaatccagagtgacttactctcctctctttgcagGTGCAAATCCGACCATGGAACCTAAGTGACAGCGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTAGTTGGGGGAGTTCCACGACCCCTTCGAGCTggtaatttgggtgacatactggcccagagcaaaccccaaggatgacatacc Alignment from CESAR GTGCAAATCCGACCGTGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTg gtaggataaagtatatgaatccagagtgacttactctcctctctttgcagGTGCAAATCCGACCATGGAACCTAAGTGACAGCGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTAGTTGGGGGAGTTCCACGACCCCTTCGAGCTggtaatttgggtgacatactggcccagagcaaaccccaaggatgacatacc Alignment from Spaln_aa2Genome GTGCAAATCCGACCGTGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTG gtaggataaagtatatgaatccagagtgacttactctcctctctttgcagGTGCAAATCCGACCATGGAACCTAAGTGACAGCGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTAGTTGGGGGAGTTCCACGACCCCTTCGAGCTGgtaatttgggtgacatactggcccagagcaaaccccaaggatgacatacc Alignment from Spaln_nt2Genome GTGCAAATCCGACCGTGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTG gtaggataaagtatatgaatccagagtgacttactctcctctctttgcagGTGCAAATCCGACCATGGAACCTAAGTGACAGCGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTAGTTGGGGGAGTTCCACGACCCCTTCGAGCTGgtaatttgggtgacatactggcccagagcaaaccccaaggatgacatacc Alignment from Pairagon GTGCAAATCCGACCGTGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTG gtaggataaagtatatgaatccagagtgacttactctcctctctttgcagGTGCAAATCCGACCATGGAACCTAAGTGACAGCGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTAGTTGGGGGAGTTCCACGACCCCTTCGAGCTGgtaatttgggtgacatactggcccagagcaaaccccaaggatgacatacc Alignment from Exonerate_protein2genome GTGCAAATCCGACCGTGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTG gtaggataaagtatatgaatccagagtgacttactctcctctctttgcagGTGCAAATCCGACCATGGAACCTAAGTGACAGCGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTAGTTGGGGGAGTTCCACGACCCCTTCGAGCTGgtaatttgggtgacatactggcccagagcaaaccccaaggatgacatacc Alignment from Exonerate_coding2genome GTGCAAATCCGACCGTGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTG gtaggataaagtatatgaatccagagtgacttactctcctctctttgcagGTGCAAATCCGACCATGGAACCTAAGTGACAGCGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTAGTTGGGGGAGTTCCACGACCCCTTCGAGCTGgtaatttgggtgacatactggcccagagcaaaccccaaggatgacatacc Alignment from GeneWise GTGCAAATCCGACCGTGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTG gtaggataaagtatatgaatccagagtgacttactctcctctctttgcagGTGCAAATCCGACCATGGAACCTAAGTGACAGCGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTAGTTGGGGGAGTTCCACGACCCCTTCGAGCTGgtaatttgggtgacatactggcccagagcaaaccccaaggatgacatacc #### Cpn1_ID8872_8 --> 2 - 0 Original Alignment gtGAACATGGGGATTATTTCCGGCTGCTGCTCCCGGGTACTTACTCTGTCACTGCCAAGGCACCAGGGTACGACCCCAAAACAGTGACTGTGACGGTGGGACCTGCGGGACCAACAGTG atgtctctttgtctgattactggcaggtgttgcccatgtttgtattttaggtGAACAAGGTGATTATTTCCGCCTTTTGCTCCCAGGTACATATTCTGTGGCTGCCAAAGCATCAGGTTATGACCCCAAAACAGTGACTGTGAAGGTGGGACCTGCAGGGCCCACTGTGgtaagtccttgtctaaaatgcatcactgttgtgagttgatcgagaggata Alignment from CESAR gtGAACATGGGGATTATTTCCGGCTGCTGCTCCCGGGTACTTACTCTGTCACTGCCAAGGCACCAGGGTACGACCCCAAAACAGTGACTGTGACGGTGGGACCTGCGGGACCAACAGTG atgtctctttgtctgattactggcaggtgttgcccatgtttgtattttaggtGAACAAGGTGATTATTTCCGCCTTTTGCTCCCAGGTACATATTCTGTGGCTGCCAAAGCATCAGGTTATGACCCCAAAACAGTGACTGTGAAGGTGGGACCTGCAGGGCCCACTGTGgtaagtccttgtctaaaatgcatcactgttgtgagttgatcgagaggata Alignment from Spaln_aa2Genome GTGAACATGGGGATTATTTCCGGCTGCTGCTCCCGGGTACTTACTCTGTCACTGCCAAGGCACCAGGGTACGACCCCAAAACAGTGACTGTGACGGTGGGACCTGCGGGACCAACAGTG atgtctctttgtctgattactggcaggtgttgcccatgtttgtattttagGTGAACAAGGTGATTATTTCCGCCTTTTGCTCCCAGGTACATATTCTGTGGCTGCCAAAGCATCAGGTTATGACCCCAAAACAGTGACTGTGAAGGTGGGACCTGCAGGGCCCACTGTGgtaagtccttgtctaaaatgcatcactgttgtgagttgatcgagaggata Alignment from Spaln_nt2Genome GTGAACATGGGGATTATTTCCGGCTGCTGCTCCCGGGTACTTACTCTGTCACTGCCAAGGCACCAGGGTACGACCCCAAAACAGTGACTGTGACGGTGGGACCTGCGGGACCAACAGTG atgtctctttgtctgattactggcaggtgttgcccatgtttgtattttagGTGAACAAGGTGATTATTTCCGCCTTTTGCTCCCAGGTACATATTCTGTGGCTGCCAAAGCATCAGGTTATGACCCCAAAACAGTGACTGTGAAGGTGGGACCTGCAGGGCCCACTGTGgtaagtccttgtctaaaatgcatcactgttgtgagttgatcgagaggata Alignment from Pairagon GTGAACATGGGGATTATTTCCGGCTGCTGCTCCCGGGTACTTACTCTGTCACTGCCAAGGCACCAGGGTACGACCCCAAAACAGTGACTGTGACGGTGGGACCTGCGGGACCAACAGTG atgtctctttgtctgattactggcaggtgttgcccatgtttgtattttagGTGAACAAGGTGATTATTTCCGCCTTTTGCTCCCAGGTACATATTCTGTGGCTGCCAAAGCATCAGGTTATGACCCCAAAACAGTGACTGTGAAGGTGGGACCTGCAGGGCCCACTGTGgtaagtccttgtctaaaatgcatcactgttgtgagttgatcgagaggata Alignment from Exonerate_protein2genome GTGAACATGGGGATTATTTCCGGCTGCTGCTCCCGGGTACTTACTCTGTCACTGCCAAGGCACCAGGGTACGACCCCAAAACAGTGACTGTGACGGTGGGACCTGCGGGACCAACAGTG atgtctctttgtctgattactggcaggtgttgcccatgtttgtattttagGTGAACAAGGTGATTATTTCCGCCTTTTGCTCCCAGGTACATATTCTGTGGCTGCCAAAGCATCAGGTTATGACCCCAAAACAGTGACTGTGAAGGTGGGACCTGCAGGGCCCACTGTGgtaagtccttgtctaaaatgcatcactgttgtgagttgatcgagaggata Alignment from Exonerate_coding2genome atgtctctttgtctgattactggcaggtgttgcccatgtttgtattttaggtgaacaaggtgattatttccgccttttgctcccaggtacatattctgtggctgccaaagcatcaggttatgaccccaaaacagtgactgtgaaggtgggacctgcagggcccactgtggtaagtccttgtctaaaatgcatcactgttgtgagttgatcgagaggata Alignment from GeneWise GTGAACATGGGGATTATTTCCGGCTGCTGCTCCCGGGTACTTACTCTGTCACTGCCAAGGCACCAGGGTACGACCCCAAAACAGTGACTGTGACGGTGGGACCTGCGGGACCAACAGTG atgtctctttgtctgattactggcaggtgttgcccatgtttgtattttagGTGAACAAGGTGATTATTTCCGCCTTTTGCTCCCAGGTACATATTCTGTGGCTGCCAAAGCATCAGGTTATGACCCCAAAACAGTGACTGTGAAGGTGGGACCTGCAGGGCCCACTGTGgtaagtccttgtctaaaatgcatcactgttgtgagttgatcgagaggata #### Cpn1_ID8875_5 --> 0 - 1 Original Alignment CTGGCCAAGGTCTACTCCTACGCCCATGGATGGATGCACCAAGGTTGGAACTGTGGGGACTACTTTCCAGACGGCATCACCAACGGGGCGTCCTGGTATTCTCTCAGCAAGg tcagttgtaggttaagtcatgactcctttttgtatgtatctgtcttctagCTG---GAAGTATCATCCTTTGCCCCAGGATGGATACACCAAGGTTGGAACTGTGGGGATTATTATCCCGATGGCATTACAAATGGGGCATCATGGTATTCTCTCAGCAAAggtaagtatagttaaaggctggcctcactgtggaatagttggatatggtct Alignment from CESAR CTGGCCAAGGTCTACTCCTACGCCCATGGATGGATGCACCAAGGTTGGAACTGTGGGGACTACTTTCCAGACGGCATCACCAACGGGGCGTCCTGGTATTCTCTCAGCAAGg tcagttgtaggttaagtcatgactcctttttgtatgtatctgtcttctagCTG---GAAGTATCATCCTTTGCCCCAGGATGGATACACCAAGGTTGGAACTGTGGGGATTATTATCCCGATGGCATTACAAATGGGGCATCATGGTATTCTCTCAGCAAAggtaagtatagttaaaggctggcctcactgtggaatagttggatatggtct Alignment from Spaln_aa2Genome CTGGCCAAGGTCTACTCCTACGCCCATGGATGGATGCACCAAGGTTGGAACTGTGGGGACTACTTTCCAGACGGCATCACCAACGGGGCGTCCTGGTATTCTCTCAGCAAGG tcagttgtaggttaagtcatgactcctttttgtatgtatctgtcttctagCTG---GAAGTATCATCCTTTGCCCCAGGATGGATACACCAAGGTTGGAACTGTGGGGATTATTATCCCGATGGCATTACAAATGGGGCATCATGGTATTCTCTCAGCAAAGgtaagtatagttaaaggctggcctcactgtggaatagttggatatggtct Alignment from Spaln_nt2Genome CTGGCCAAGGTCTACTCCTACGCCCATGGATGGATGCACCAAGGTTGGAACTGTGGGGACTACTTTCCAGACGGCATCACCAACGGGGCGTCCTGGTATTCTCTCAGCAAGG tcagttgtaggttaagtcatgactcctttttgtatgtatctgtcttctagCTGG---AAGTATCATCCTTTGCCCCAGGATGGATACACCAAGGTTGGAACTGTGGGGATTATTATCCCGATGGCATTACAAATGGGGCATCATGGTATTCTCTCAGCAAAGgtaagtatagttaaaggctggcctcactgtggaatagttggatatggtct Alignment from Pairagon CTGGCCAAGGTCTACTCCTACGCCCATGGATGGATGCACCAAGGTTGGAACTGTGGGGACTACTTTCCAGACGGCATCACCAACGGGGCGTCCTGGTATTCTCTCAGCAAGG tcagttgtaggttaagtcatgactcctttttgtatgtatctgtcttctagctggaagtatcatcctttgccccag----------------------------GATGGATACACCAAGGTTGGAACTGTGGGGATTATTATCCCGATGGCATTACAAATGGGGCATCATGGTATTCTCTCAGCAAAGgtaagtatagttaaaggctggcctcactgtggaatagttggatatggtct Alignment from Exonerate_protein2genome GATGGATGCACCAAGGTTGGAACTGTGGGGACTACTTTCCAGACGGCATCACCAACGGGGCGTCCTGGTATTCTCTCAGCAAGG tcagttgtaggttaagtcatgactcctttttgtatgtatctgtcttctagctggaagtatcatcctttgccccagGATGGATACACCAAGGTTGGAACTGTGGGGATTATTATCCCGATGGCATTACAAATGGGGCATCATGGTATTCTCTCAGCAAAGgtaagtatagttaaaggctggcctcactgtggaatagttggatatggtct Alignment from Exonerate_coding2genome GATGGATGCACCAAGGTTGGAACTGTGGGGACTACTTTCCAGACGGCATCACCAACGGGGCGTCCTGGTATTCTCTCAGCAAGG tcagttgtaggttaagtcatgactcctttttgtatgtatctgtcttctagctggaagtatcatcctttgccccagGATGGATACACCAAGGTTGGAACTGTGGGGATTATTATCCCGATGGCATTACAAATGGGGCATCATGGTATTCTCTCAGCAAAGgtaagtatagttaaaggctggcctcactgtggaatagttggatatggtct Alignment from GeneWise ---------TACTCCTACGCCCATGGATGGATGCACCAAGGTTGGAACTGTGGGGACTACTTTCCAGACGGCATCACCAACGGGGCGTCCTGGTATTCTCTCAGCAAGG tcagttgtaggttaagtcatgactcctttttgtatgtatctgtcttctagCTGGAAGTATCATCCTTTGCCCCAGGATGGATACACCAAGGTTGGAACTGTGGGGATTATTATCCCGATGGCATTACAAATGGGGCATCATGGTATTCTCTCAGCAAAGgtaagtatagttaaaggctggcctcactgtggaatagttggatatggtct #### Cpn1_ID8877_3 --> 0 - 0 Original Alignment GGCCCAAACATGTCTGGGTATCTGGTTGGT------AGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGACAACTGGAAAAGTCAG tctggcatgtcaagatgatgtgcaaatatgcctcccctcttctgtctcagGGCCCAAACATGTCTGGGTATTTGGTTGGGGTTGGTAGAAACAATGCTAATGGG---GACCTGAACCGAACCTTCCCAGATCTCAATACCTACTTTTACCACAACTCCAAAAATGGTGGTCCTAACCACCACTTACCCCTCCCTGACAATTGGAAGAGTCAAgtaggcgaagatgataaggagacacgagtggactcaaccaacttttgtgt Alignment from CESAR GGCCCAAACATGTCTGGGTATCTG------GTTGGTAGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGACAACTGGAAAAGTCAG tctggcatgtcaagatgatgtgcaaatatgcctcccctcttctgtctcagGGCCCAAACATGTCTGGGTATTTGGTTGGGGTTGGTAGAAACAATGCTAATGGG---GACCTGAACCGAACCTTCCCAGATCTCAATACCTACTTTTACCACAACTCCAAAAATGGTGGTCCTAACCACCACTTACCCCTCCCTGACAATTGGAAGAGTCAAgtaggcgaagatgataaggagacacgagtggactcaaccaacttttgtgt Alignment from Spaln_aa2Genome GGCCCAAACATGTCTGGGTATCTG------GTTGGTAGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGACAACTGGAAAAGTCAG tctggcatgtcaagatgatgtgcaaatatgcctcccctcttctgtctcagGGCCCAAACATGTCTGGGTATTTGGTTGGGGTTGGTAGAAACAATGCTAATGGG---GACCTGAACCGAACCTTCCCAGATCTCAATACCTACTTTTACCACAACTCCAAAAATGGTGGTCCTAACCACCACTTACCCCTCCCTGACAATTGGAAGAGTCAAgtaggcgaagatgataaggagacacgagtggactcaaccaacttttgtgt Alignment from Spaln_nt2Genome GGCCCAAACATGTCTGGGTATCTGGTTGG------TAGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGACAACTGGAAAAGTCAG tctggcatgtcaagatgatgtgcaaatatgcctcccctcttctgtctcagGGCCCAAACATGTCTGGGTATTTGGTTGGGGTTGGTAGAAACAATGCTAATGG---GGACCTGAACCGAACCTTCCCAGATCTCAATACCTACTTTTACCACAACTCCAAAAATGGTGGTCCTAACCACCACTTACCCCTCCCTGACAATTGGAAGAGTCAAgtaggcgaagatgataaggagacacgagtggactcaaccaacttttgtgt Alignment from Pairagon GGCCCAAACATGTCTGGGTATCT------GGTTGGTAGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGACAACTGGAAAAGTCAG tctggcatgtcaagatgatgtgcaaatatgcctcccctcttctgtctcagGGCCCAAACATGTCTGGGTATTTGGTTGGGGTTGGTAGAAACAATGCTAATGG---GGACCTGAACCGAACCTTCCCAGATCTCAATACCTACTTTTACCACAACTCCAAAAATGGTGGTCCTAACCACCACTTACCCCTCCCTGACAATTGGAAGAGTCAAgtaggcgaagatgataaggagacacgagtggactcaaccaacttttgtgt Alignment from Exonerate_protein2genome GGCCCAAACATGTCTGGGTATCTG------GTTGGTAGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGACAACTGGAAAAGTCAG tctggcatgtcaagatgatgtgcaaatatgcctcccctcttctgtctcagGGCCCAAACATGTCTGGGTATTTGGTTGGGGTTGGTAGAAACAATGCTAATGGG---GACCTGAACCGAACCTTCCCAGATCTCAATACCTACTTTTACCACAACTCCAAAAATGGTGGTCCTAACCACCACTTACCCCTCCCTGACAATTGGAAGAGTCAAgtaggcgaagatgataaggagacacgagtggactcaaccaacttttgtgt Alignment from Exonerate_coding2genome GGCCCAAACATGTCTGGGTATCTG------GTTGGTAGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGACAACTGGAAAAGTCAG tctggcatgtcaagatgatgtgcaaatatgcctcccctcttctgtctcagGGCCCAAACATGTCTGGGTATTTGGTTGGGGTTGGTAGAAACAATGCTAATGGG---GACCTGAACCGAACCTTCCCAGATCTCAATACCTACTTTTACCACAACTCCAAAAATGGTGGTCCTAACCACCACTTACCCCTCCCTGACAATTGGAAGAGTCAAgtaggcgaagatgataaggagacacgagtggactcaaccaacttttgtgt Alignment from GeneWise GGCCCAAACATGTCTGGGTATCTGGTT------GGTAGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGACAACTGGAAAAGTCAG tctggcatgtcaagatgatgtgcaaatatgcctcccctcttctgtctcagGGCCCAAACATGTCTGGGTATTTGGTTGGGGTTGGTAGAAACAATGCTAATGGG---GACCTGAACCGAACCTTCCCAGATCTCAATACCTACTTTTACCACAACTCCAAAAATGGTGGTCCTAACCACCACTTACCCCTCCCTGACAATTGGAAGAGTCAAgtaggcgaagatgataaggagacacgagtggactcaaccaacttttgtgt #### Cpn1_ID8878_2 --> 2 - 0 Original Alignment tgGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG tatgtatgacatctaatgccattcggagtatcttgtgctttttattaaagtgGAACCGGAAGTAAAGTATGTGGGAAACATGCATGGGAATAAAGTGCTAGGGCACAGGCTACTTTTGCAGCTATCTGAATTCCTCTGCAAGGAATTTCAGAACCGAAACAAACGTATTCTGCGTCTAACCCAGGACACACAAATTCTCATCTTTCCCTCTATGAACCCTGATGGTTATGGGGTGGCAACCGCTCTAgtaagtagtggaggttagatagatgcaaccagaacttgttcataagattg Alignment from CESAR tgGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG tatgtatgacatctaatgccattcggagtatcttgtgctttttattaaagtgGAACCGGAAGTAAAGTATGTGGGAAACATGCATGGGAATAAAGTGCTAGGGCACAGGCTACTTTTGCAGCTATCTGAATTCCTCTGCAAGGAATTTCAGAACCGAAACAAACGTATTCTGCGTCTAACCCAGGACACACAAATTCTCATCTTTCCCTCTATGAACCCTGATGGTTATGGGGTGGCAACCGCTCTAgtaagtagtggaggttagatagatgcaaccagaacttgttcataagattg Alignment from Spaln_aa2Genome TGGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG tatgtatgacatctaatgccattcggagtatcttgtgctttttattaaagTGGAACCGGAAGTAAAGTATGTGGGAAACATGCATGGGAATAAAGTGCTAGGGCACAGGCTACTTTTGCAGCTATCTGAATTCCTCTGCAAGGAATTTCAGAACCGAAACAAACGTATTCTGCGTCTAACCCAGGACACACAAATTCTCATCTTTCCCTCTATGAACCCTGATGGTTATGGGGTGGCAACCGCTCTAgtaagtagtggaggttagatagatgcaaccagaacttgttcataagattg Alignment from Spaln_nt2Genome TGGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG tatgtatgacatctaatgccattcggagtatcttgtgctttttattaaagTGGAACCGGAAGTAAAGTATGTGGGAAACATGCATGGGAATAAAGTGCTAGGGCACAGGCTACTTTTGCAGCTATCTGAATTCCTCTGCAAGGAATTTCAGAACCGAAACAAACGTATTCTGCGTCTAACCCAGGACACACAAATTCTCATCTTTCCCTCTATGAACCCTGATGGTTATGGGGTGGCAACCGCTCTAgtaagtagtggaggttagatagatgcaaccagaacttgttcataagattg Alignment from Pairagon TGGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG tatgtatgacatctaatgccattcggagtatcttgtgctttttattaaagTGGAACCGGAAGTAAAGTATGTGGGAAACATGCATGGGAATAAAGTGCTAGGGCACAGGCTACTTTTGCAGCTATCTGAATTCCTCTGCAAGGAATTTCAGAACCGAAACAAACGTATTCTGCGTCTAACCCAGGACACACAAATTCTCATCTTTCCCTCTATGAACCCTGATGGTTATGGGGTGGCAACCGCTCTAgtaagtagtggaggttagatagatgcaaccagaacttgttcataagattg Alignment from Exonerate_protein2genome TGGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG tatgtatgacatctaatgccattcggagtatcttgtgctttttattaaagTGGAACCGGAAGTAAAGTATGTGGGAAACATGCATGGGAATAAAGTGCTAGGGCACAGGCTACTTTTGCAGCTATCTGAATTCCTCTGCAAGGAATTTCAGAACCGAAACAAACGTATTCTGCGTCTAACCCAGGACACACAAATTCTCATCTTTCCCTCTATGAACCCTGATGGTTATGGGGTGGCAACCGCTCTAgtaagtagtggaggttagatagatgcaaccagaacttgttcataagattg Alignment from Exonerate_coding2genome TGGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG tatgtatgacatctaatgccattcggagtatcttgtgctttttattaaagTGGAACCGGAAGTAAAGTATGTGGGAAACATGCATGGGAATAAAGTGCTAGGGCACAGGCTACTTTTGCAGCTATCTGAATTCCTCTGCAAGGAATTTCAGAACCGAAACAAACGTATTCTGCGTCTAACCCAGGACACACAAATTCTCATCTTTCCCTCTATGAACCCTGATGGTTATGGGGTGGCAACCGCTCTAgtaagtagtggaggttagatagatgcaaccagaacttgttcataagattg Alignment from GeneWise TGGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG tatgtatgacatctaatgccattcggagtatcttgtgctttttattaaagTGGAACCGGAAGTAAAGTATGTGGGAAACATGCATGGGAATAAAGTGCTAGGGCACAGGCTACTTTTGCAGCTATCTGAATTCCTCTGCAAGGAATTTCAGAACCGAAACAAACGTATTCTGCGTCTAACCCAGGACACACAAATTCTCATCTTTCCCTCTATGAACCCTGATGGTTATGGGGTGGCAACCGCTCTAgtaagtagtggaggttagatagatgcaaccagaacttgttcataagattg #### Cpsf7_ID2865_5 --> 2 - 2 Original Alignment gaATACCTCCACGGGCCCACTCCCGAGACTCTAGTGATTCTGCTGATGGACGGGCAACCCCCTCTGAGAATCTTGTACCCTCATCTGCTCGTGTGGATAAGCCCCCCAGCGTGTTGCCCTACTTTAACCGTCCTCCTTCAGCCCTTCCCCTAATGGGTCTGCCCCCACCCCCAATTCCACCCCCACCACCTCTCTCCTCAAGCTTTGGTGTCCCTCCTCCTCCTCCTGGTATCCACTACCAGCATCTCATGCCCCCTCCTCCTCGATTACCTCCTCATCTGGCTGTACCTCCCCCGGGGGCCATCCCACCAGCCCTTCACCTCAACCCAGCCTTCTTCCCCCCACCAAATGCTACAGTGGGGCCTCCACCAGATACTTACATGAAGGCCTCTACACCCTATAACCACCATGGCag agacctattacatgcttggctcttggctcgtgtctaattatttattgcaggaATACCCCCACAGGCCTATTCCAAAGATTTGAGTGATTCTGCTGATGGACGAGCAACCCCCTGCGAGAATCTTGTACCCCCATCTGCTCGAGTGGATAAGCCCCCCAGTGTCTTGCCCTATTTTAACCGTCCTCCTTCAGCCCTTCCCCTAATGGGTTTGCCCCCTCCCCCAATTCCACCCCCACCAACTCTCTCTTCGAGCTTTGGTGTTCCTCCTCCTCCTCCTGGTATCCACTACCAGCATCTTATGCCCCCTCCTCCTCGGTTACCTTCCCATCTCACTGTACCTCCTCTAGGGGCCATCCCTCCGGCCCTTCACCTGAACTTGGCCTTTGTCCCACCACCAAACGCTACTGTAGGGCCTCCACCAGATACGTACATGAAGGCCTCAACACCCTATAACCACCATGGCaggtatgttgttcttatgttattatgactctctcagctgaacttagagcaac Alignment from CESAR gaATACCTCCACGGGCCCACTCCCGAGACTCTAGTGATTCTGCTGATGGACGGGCAACCCCCTCTGAGAATCTTGTACCCTCATCTGCTCGTGTGGATAAGCCCCCCAGCGTGTTGCCCTACTTTAACCGTCCTCCTTCAGCCCTTCCCCTAATGGGTCTGCCCCCACCCCCAATTCCACCCCCACCACCTCTCTCCTCAAGCTTTGGTGTCCCTCCTCCTCCTCCTGGTATCCACTACCAGCATCTCATGCCCCCTCCTCCTCGATTACCTCCTCATCTGGCTGTACCTCCCCCGGGGGCCATCCCACCAGCCCTTCACCTCAACCCAGCCTTCTTCCCCCCACCAAATGCTACAGTGGGGCCTCCACCAGATACTTACATGAAGGCCTCTACACCCTATAACCACCATGGCag agacctattacatgcttggctcttggctcgtgtctaattatttattgcaggaATACCCCCACAGGCCTATTCCAAAGATTTGAGTGATTCTGCTGATGGACGAGCAACCCCCTGCGAGAATCTTGTACCCCCATCTGCTCGAGTGGATAAGCCCCCCAGTGTCTTGCCCTATTTTAACCGTCCTCCTTCAGCCCTTCCCCTAATGGGTTTGCCCCCTCCCCCAATTCCACCCCCACCAACTCTCTCTTCGAGCTTTGGTGTTCCTCCTCCTCCTCCTGGTATCCACTACCAGCATCTTATGCCCCCTCCTCCTCGGTTACCTTCCCATCTCACTGTACCTCCTCTAGGGGCCATCCCTCCGGCCCTTCACCTGAACTTGGCCTTTGTCCCACCACCAAACGCTACTGTAGGGCCTCCACCAGATACGTACATGAAGGCCTCAACACCCTATAACCACCATGGCaggtatgttgttcttatgttattatgactctctcagctgaacttagagcaac Alignment from Spaln_aa2Genome GAATACCTCCACGGGCCCACTCCCGAGACTCTAGTGATTCTGCTGATGGACGGGCAACCCCCTCTGAGAATCTTGTACCCTCATCTGCTCGTGTGGATAAGCCCCCCAGCGTGTTGCCCTACTTTAACCGTCCTCCTTCAGCCCTTCCCCTAATGGGTCTGCCCCCACCCCCAATTCCACCCCCACCACCTCTCTCCTCAAGCTTTGGTGTCCCTCCTCCTCCTCCTGGTATCCACTACCAGCATCTCATGCCCCCTCCTCCTCGATTACCTCCTCATCTGGCTGTACCTCCCCCGGGGGCCATCCCACCAGCCCTTCACCTCAACCCAGCCTTCTTCCCCCCACCAAATGCTACAGTGGGGCCTCCACCAGATACTTACATGAAGGCCTCTACACCCTATAACCACCATGGCAG agacctattacatgcttggctcttggctcgtgtctaattatttattgcagGAATACCCCCACAGGCCTATTCCAAAGATTTGAGTGATTCTGCTGATGGACGAGCAACCCCCTGCGAGAATCTTGTACCCCCATCTGCTCGAGTGGATAAGCCCCCCAGTGTCTTGCCCTATTTTAACCGTCCTCCTTCAGCCCTTCCCCTAATGGGTTTGCCCCCTCCCCCAATTCCACCCCCACCAACTCTCTCTTCGAGCTTTGGTGTTCCTCCTCCTCCTCCTGGTATCCACTACCAGCATCTTATGCCCCCTCCTCCTCGGTTACCTTCCCATCTCACTGTACCTCCTCTAGGGGCCATCCCTCCGGCCCTTCACCTGAACTTGGCCTTTGTCCCACCACCAAACGCTACTGTAGGGCCTCCACCAGATACGTACATGAAGGCCTCAACACCCTATAACCACCATGGCAGgtatgttgttcttatgttattatgactctctcagctgaacttagagcaac Alignment from Spaln_nt2Genome GAATACCTCCACGGGCCCACTCCCGAGACTCTAGTGATTCTGCTGATGGACGGGCAACCCCCTCTGAGAATCTTGTACCCTCATCTGCTCGTGTGGATAAGCCCCCCAGCGTGTTGCCCTACTTTAACCGTCCTCCTTCAGCCCTTCCCCTAATGGGTCTGCCCCCACCCCCAATTCCACCCCCACCACCTCTCTCCTCAAGCTTTGGTGTCCCTCCTCCTCCTCCTGGTATCCACTACCAGCATCTCATGCCCCCTCCTCCTCGATTACCTCCTCATCTGGCTGTACCTCCCCCGGGGGCCATCCCACCAGCCCTTCACCTCAACCCAGCCTTCTTCCCCCCACCAAATGCTACAGTGGGGCCTCCACCAGATACTTACATGAAGGCCTCTACACCCTATAACCACCATGGCAG agacctattacatgcttggctcttggctcgtgtctaattatttattgcagGAATACCCCCACAGGCCTATTCCAAAGATTTGAGTGATTCTGCTGATGGACGAGCAACCCCCTGCGAGAATCTTGTACCCCCATCTGCTCGAGTGGATAAGCCCCCCAGTGTCTTGCCCTATTTTAACCGTCCTCCTTCAGCCCTTCCCCTAATGGGTTTGCCCCCTCCCCCAATTCCACCCCCACCAACTCTCTCTTCGAGCTTTGGTGTTCCTCCTCCTCCTCCTGGTATCCACTACCAGCATCTTATGCCCCCTCCTCCTCGGTTACCTTCCCATCTCACTGTACCTCCTCTAGGGGCCATCCCTCCGGCCCTTCACCTGAACTTGGCCTTTGTCCCACCACCAAACGCTACTGTAGGGCCTCCACCAGATACGTACATGAAGGCCTCAACACCCTATAACCACCATGGCAGgtatgttgttcttatgttattatgactctctcagctgaacttagagcaac Alignment from Pairagon GAATACCTCCACGGGCCCACTCCCGAGACTCTAGTGATTCTGCTGATGGACGGGCAACCCCCTCTGAGAATCTTGTACCCTCATCTGCTCGTGTGGATAAGCCCCCCAGCGTGTTGCCCTACTTTAACCGTCCTCCTTCAGCCCTTCCCCTAATGGGTCTGCCCCCACCCCCAATTCCACCCCCACCACCTCTCTCCTCAAGCTTTGGTGTCCCTCCTCCTCCTCCTGGTATCCACTACCAGCATCTCATGCCCCCTCCTCCTCGATTACCTCCTCATCTGGCTGTACCTCCCCCGGGGGCCATCCCACCAGCCCTTCACCTCAACCCAGCCTTCTTCCCCCCACCAAATGCTACAGTGGGGCCTCCACCAGATACTTACATGAAGGCCTCTACACCCTATAACCACCATGGCAG agacctattacatgcttggctcttggctcgtgtctaattatttattgcagGAATACCCCCACAGGCCTATTCCAAAGATTTGAGTGATTCTGCTGATGGACGAGCAACCCCCTGCGAGAATCTTGTACCCCCATCTGCTCGAGTGGATAAGCCCCCCAGTGTCTTGCCCTATTTTAACCGTCCTCCTTCAGCCCTTCCCCTAATGGGTTTGCCCCCTCCCCCAATTCCACCCCCACCAACTCTCTCTTCGAGCTTTGGTGTTCCTCCTCCTCCTCCTGGTATCCACTACCAGCATCTTATGCCCCCTCCTCCTCGGTTACCTTCCCATCTCACTGTACCTCCTCTAGGGGCCATCCCTCCGGCCCTTCACCTGAACTTGGCCTTTGTCCCACCACCAAACGCTACTGTAGGGCCTCCACCAGATACGTACATGAAGGCCTCAACACCCTATAACCACCATGGCAGgtatgttgttcttatgttattatgactctctcagctgaacttagagcaac Alignment from Exonerate_protein2genome GAATACCTCCACGGGCCCACTCCCGAGACTCTAGTGATTCTGCTGATGGACGGGCAACCCCCTCTGAGAATCTTGTACCCTCATCTGCTCGTGTGGATAAGCCCCCCAGCGTGTTGCCCTACTTTAACCGTCCTCCTTCAGCCCTTCCCCTAATGGGTCTGCCCCCACCCCCAATTCCACCCCCACCACCTCTCTCCTCAAGCTTTGGTGTCCCTCCTCCTCCTCCTGGTATCCACTACCAGCATCTCATGCCCCCTCCTCCTCGATTACCTCCTCATCTGGCTGTACCTCCCCCGGGGGCCATCCCACCAGCCCTTCACCTCAACCCAGCCTTCTTCCCCCCACCAAATGCTACAGTGGGGCCTCCACCAGATACTTACATGAAGGCCTCTACACCCTATAACCACCATGGCAG agacctattacatgcttggctcttggctcgtgtctaattatttattgcagGAATACCCCCACAGGCCTATTCCAAAGATTTGAGTGATTCTGCTGATGGACGAGCAACCCCCTGCGAGAATCTTGTACCCCCATCTGCTCGAGTGGATAAGCCCCCCAGTGTCTTGCCCTATTTTAACCGTCCTCCTTCAGCCCTTCCCCTAATGGGTTTGCCCCCTCCCCCAATTCCACCCCCACCAACTCTCTCTTCGAGCTTTGGTGTTCCTCCTCCTCCTCCTGGTATCCACTACCAGCATCTTATGCCCCCTCCTCCTCGGTTACCTTCCCATCTCACTGTACCTCCTCTAGGGGCCATCCCTCCGGCCCTTCACCTGAACTTGGCCTTTGTCCCACCACCAAACGCTACTGTAGGGCCTCCACCAGATACGTACATGAAGGCCTCAACACCCTATAACCACCATGGCAGgtatgttgttcttatgttattatgactctctcagctgaacttagagcaac Alignment from Exonerate_coding2genome GAATACCTCCACGGGCCCACTCCCGAGACTCTAGTGATTCTGCTGATGGACGGGCAACCCCCTCTGAGAATCTTGTACCCTCATCTGCTCGTGTGGATAAGCCCCCCAGCGTGTTGCCCTACTTTAACCGTCCTCCTTCAGCCCTTCCCCTAATGGGTCTGCCCCCACCCCCAATTCCACCCCCACCACCTCTCTCCTCAAGCTTTGGTGTCCCTCCTCCTCCTCCTGGTATCCACTACCAGCATCTCATGCCCCCTCCTCCTCGATTACCTCCTCATCTGGCTGTACCTCCCCCGGGGGCCATCCCACCAGCCCTTCACCTCAACCCAGCCTTCTTCCCCCCACCAAATGCTACAGTGGGGCCTCCACCAGATACTTACATGAAGGCCTCTACACCCTATAACCACCATGGCAG agacctattacatgcttggctcttggctcgtgtctaattatttattgcagGAATACCCCCACAGGCCTATTCCAAAGATTTGAGTGATTCTGCTGATGGACGAGCAACCCCCTGCGAGAATCTTGTACCCCCATCTGCTCGAGTGGATAAGCCCCCCAGTGTCTTGCCCTATTTTAACCGTCCTCCTTCAGCCCTTCCCCTAATGGGTTTGCCCCCTCCCCCAATTCCACCCCCACCAACTCTCTCTTCGAGCTTTGGTGTTCCTCCTCCTCCTCCTGGTATCCACTACCAGCATCTTATGCCCCCTCCTCCTCGGTTACCTTCCCATCTCACTGTACCTCCTCTAGGGGCCATCCCTCCGGCCCTTCACCTGAACTTGGCCTTTGTCCCACCACCAAACGCTACTGTAGGGCCTCCACCAGATACGTACATGAAGGCCTCAACACCCTATAACCACCATGGCAGgtatgttgttcttatgttattatgactctctcagctgaacttagagcaac Alignment from GeneWise GAATACCTCCACGGGCCCACTCCCGAGACTCTAGTGATTCTGCTGATGGACGGGCAACCCCCTCTGAGAATCTTGTACCCTCATCTGCTCGTGTGGATAAGCCCCCCAGCGTGTTGCCCTACTTTAACCGTCCTCCTTCAGCCCTTCCCCTAATGGGTCTGCCCCCACCCCCAATTCCACCCCCACCACCTCTCTCCTCAAGCTTTGGTGTCCCTCCTCCTCCTCCTGGTATCCACTACCAGCATCTCATGCCCCCTCCTCCTCGATTACCTCCTCATCTGGCTGTACCTCCCCCGGGGGCCATCCCACCAGCCCTTCACCTCAACCCAGCCTTCTTCCCCCCACCAAATGCTACAGTGGGGCCTCCACCAGATACTTACATGAAGGCCTCTACACCCTATAACCACCATGGCAG agacctattacatgcttggctcttggctcgtgtctaattatttattgcagGAATACCCCCACAGGCCTATTCCAAAGATTTGAGTGATTCTGCTGATGGACGAGCAACCCCCTGCGAGAATCTTGTACCCCCATCTGCTCGAGTGGATAAGCCCCCCAGTGTCTTGCCCTATTTTAACCGTCCTCCTTCAGCCCTTCCCCTAATGGGTTTGCCCCCTCCCCCAATTCCACCCCCACCAACTCTCTCTTCGAGCTTTGGTGTTCCTCCTCCTCCTCCTGGTATCCACTACCAGCATCTTATGCCCCCTCCTCCTCGGTTACCTTCCCATCTCACTGTACCTCCTCTAGGGGCCATCCCTCCGGCCCTTCACCTGAACTTGGCCTTTGTCCCACCACCAAACGCTACTGTAGGGCCTCCACCAGATACGTACATGAAGGCCTCAACACCCTATAACCACCATGGCAGgtatgttgttcttatgttattatgactctctcagctgaacttagagcaac #### Cpt1a_ID36_8 --> 0 - 1 Original Alignment ATTCGTCTTCTGGGATCTACAATTCCCCTCTGCTCTGCTCAGTGGGAGCGACTCTTCAATACTTCCCGCATCCCTGGGGAGGAGACAg ctatgcttggaatttgtgatcttctgtaggccactttgcttttccaatagATTCGTCTTCTGGGATCTACGATTCCTCTCTGTTCTGCTCAATGGGAGCGACTCTCCAACACCCCCCGCACTCCAGGTGAGGAAACAggtaagcgtggattcaacagttgtctcagaaggctagtctggctgctgttg Alignment from CESAR ATTCGTCTTCTGGGATCTACAATTCCCCTCTGCTCTGCTCAGTGGGAGCGACTCTTCAATACTTCCCGCATCCCTGGGGAGGAGACAg ctatgcttggaatttgtgatcttctgtaggccactttgcttttccaatagATTCGTCTTCTGGGATCTACGATTCCTCTCTGTTCTGCTCAATGGGAGCGACTCTCCAACACCCCCCGCACTCCAGGTGAGGAAACAggtaagcgtggattcaacagttgtctcagaaggctagtctggctgctgttg Alignment from Spaln_aa2Genome ATTCGTCTTCTGGGATCTACAATTCCCCTCTGCTCTGCTCAGTGGGAGCGACTCTTCAATACTTCCCGCATCCCTGGGGAGGAGACAG ctatgcttggaatttgtgatcttctgtaggccactttgcttttccaatagATTCGTCTTCTGGGATCTACGATTCCTCTCTGTTCTGCTCAATGGGAGCGACTCTCCAACACCCCCCGCACTCCAGGTGAGGAAACAGgtaagcgtggattcaacagttgtctcagaaggctagtctggctgctgttg Alignment from Spaln_nt2Genome ATTCGTCTTCTGGGATCTACAATTCCCCTCTGCTCTGCTCAGTGGGAGCGACTCTTCAATACTTCCCGCATCCCTGGGGAGGAGACAG ctatgcttggaatttgtgatcttctgtaggccactttgcttttccaatagATTCGTCTTCTGGGATCTACGATTCCTCTCTGTTCTGCTCAATGGGAGCGACTCTCCAACACCCCCCGCACTCCAGGTGAGGAAACAGgtaagcgtggattcaacagttgtctcagaaggctagtctggctgctgttg Alignment from Pairagon ATTCGTCTTCTGGGATCTACAATTCCCCTCTGCTCTGCTCAGTGGGAGCGACTCTTCAATACTTCCCGCATCCCTGGGGAGGAGACAG ctatgcttggaatttgtgatcttctgtaggccactttgcttttccaatagATTCGTCTTCTGGGATCTACGATTCCTCTCTGTTCTGCTCAATGGGAGCGACTCTCCAACACCCCCCGCACTCCAGGTGAGGAAACAGgtaagcgtggattcaacagttgtctcagaaggctagtctggctgctgttg Alignment from Exonerate_protein2genome ATTCGTCTTCTGGGATCTACAATTCCCCTCTGCTCTGCTCAGTGGGAGCGACTCTTCAATACTTCCCGCATCCCTGGGGAGGAGACAG ctatgcttggaatttgtgatcttctgtaggccactttgcttttccaatagATTCGTCTTCTGGGATCTACGATTCCTCTCTGTTCTGCTCAATGGGAGCGACTCTCCAACACCCCCCGCACTCCAGGTGAGGAAACAGgtaagcgtggattcaacagttgtctcagaaggctagtctggctgctgttg Alignment from Exonerate_coding2genome ATTCGTCTTCTGGGATCTACAATTCCCCTCTGCTCTGCTCAGTGGGAGCGACTCTTCAATACTTCCCGCATCCCTGGGGAGGAGACAG ctatgcttggaatttgtgatcttctgtaggccactttgcttttccaatagATTCGTCTTCTGGGATCTACGATTCCTCTCTGTTCTGCTCAATGGGAGCGACTCTCCAACACCCCCCGCACTCCAGGTGAGGAAACAGgtaagcgtggattcaacagttgtctcagaaggctagtctggctgctgttg Alignment from GeneWise ATTCGTCTTCTGGGATCTACAATTCCCCTCTGCTCTGCTCAGTGGGAGCGACTCTTCAATACTTCCCGCATCCCTGGGGAGGAGACAG ctatgcttggaatttgtgatcttctgtaggccactttgcttttccaatagATTCGTCTTCTGGGATCTACGATTCCTCTCTGTTCTGCTCAATGGGAGCGACTCTCCAACACCCCCCGCACTCCAGGTGAGGAAACAGgtaagcgtggattcaacagttgtctcagaaggctagtctggctgctgttg #### Cpt1a_ID42_14 --> 0 - 0 Original Alignment GACATGGGCAAGTTCTGCCTCACGTATGAGGCTTCCATGACTCGGCTCTTCCGAGAGGGGAGGACAGAGACTGTACGCTCCTGCACTACGGAGTCCTGCAACTTTGTGCTGGCCATGATGGACCCCACAACAACG cctcacatactaatctgcacctcctggtgtcacgtttgctctgccctcagGACATGGGTAAGTTTTGGCTGTCATTTGGGGCTTCTATGACTCGACTCTTTCGTGAGGGTAGGACA---ACTGTTCACCCTTGCACAACAGAGTCCTCCAACTTTGTGTTGGCCATGATGGATTCCACAACTACAgtaaagccatgtcagggggatgggccactatgactatgggtgatgtgcct Alignment from CESAR GACATGGGCAAGTTCTGCCTCACGTATGAGGCTTCCATGACTCGGCTCTTCCGAGAGGGGAGGACAGAGACTGTACGCTCCTGCACTACGGAGTCCTGCAACTTTGTGCTGGCCATGATGGACCCCACAACAACG cctcacatactaatctgcacctcctggtgtcacgtttgctctgccctcagGACATGGGTAAGTTTTGGCTGTCATTTGGGGCTTCTATGACTCGACTCTTTCGTGAGGGTAGGACA---ACTGTTCACCCTTGCACAACAGAGTCCTCCAACTTTGTGTTGGCCATGATGGATTCCACAACTACAgtaaagccatgtcagggggatgggccactatgactatgggtgatgtgcct Alignment from Spaln_aa2Genome GACATGGGCAAGTTCTGCCTCACGTATGAGGCTTCCATGACTCGGCTCTTCCGAGAGGGGAGGACAGAGACTGTACGCTCCTGCACTACGGAGTCCTGCAACTTTGTGCTGGCCATGATGGACCCCACAACAACG cctcacatactaatctgcacctcctggtgtcacgtttgctctgccctcagGACATGGGTAAGTTTTGGCTGTCATTTGGGGCTTCTATGACTCGACTCTTTCGTGAGGGTAGGACA---ACTGTTCACCCTTGCACAACAGAGTCCTCCAACTTTGTGTTGGCCATGATGGATTCCACAACTACAgtaaagccatgtcagggggatgggccactatgactatgggtgatgtgcct Alignment from Spaln_nt2Genome GACATGGGCAAGTTCTGCCTCACGTATGAGGCTTCCATGACTCGGCTCTTCCGAGAGGGGAGGACAGAGACTGTACGCTCCTGCACTACGGAGTCCTGCAACTTTGTGCTGGCCATGATGGACCCCACAACAACG cctcacatactaatctgcacctcctggtgtcacgtttgctctgccctcagGACATGGGTAAGTTTTGGCTGTCATTTGGGGCTTCTATGACTCGACTCTTTCGTGAGGGTAGGACA---ACTGTTCACCCTTGCACAACAGAGTCCTCCAACTTTGTGTTGGCCATGATGGATTCCACAACTACAgtaaagccatgtcagggggatgggccactatgactatgggtgatgtgcct Alignment from Pairagon GACATGGGCAAGTTCTGCCTCACGTATGAGGCTTCCATGACTCGGCTCTTCCGAGAGGGGAGGACAGAGACTGTACGCTCCTGCACTACGGAGTCCTGCAACTTTGTGCTGGCCATGATGGACCCCACAACAACG cctcacatactaatctgcacctcctggtgtcacgtttgctctgccctcagGACATGGGTAAGTTTTGGCTGTCATTTGGGGCTTCTATGACTCGACTCTTTCGTGAGGGTAGGACA---ACTGTTCACCCTTGCACAACAGAGTCCTCCAACTTTGTGTTGGCCATGATGGATTCCACAACTACAgtaaagccatgtcagggggatgggccactatgactatgggtgatgtgcct Alignment from Exonerate_protein2genome GACATGGGCAAGTTCTGCCTCACGTATGAGGCTTCCATGACTCGGCTCTTCCGAGAGGGGAGGACAGAGACTGTACGCTCCTGCACTACGGAGTCCTGCAACTTTGTGCTGGCCATGATGGACCCCACAACAACG cctcacatactaatctgcacctcctggtgtcacgtttgctctgccctcagGACATGGGTAAGTTTTGGCTGTCATTTGGGGCTTCTATGACTCGACTCTTTCGTGAGGGTAGGACA---ACTGTTCACCCTTGCACAACAGAGTCCTCCAACTTTGTGTTGGCCATGATGGATTCCACAACTACAgtaaagccatgtcagggggatgggccactatgactatgggtgatgtgcct Alignment from Exonerate_coding2genome GACATGGGCAAGTTCTGCCTCACGTATGAGGCTTCCATGACTCGGCTCTTCCGAGAGGGGAGGACAGAGACTGTACGCTCCTGCACTACGGAGTCCTGCAACTTTGTGCTGGCCATGATGGACCCCACAACAACG cctcacatactaatctgcacctcctggtgtcacgtttgctctgccctcagGACATGGGTAAGTTTTGGCTGTCATTTGGGGCTTCTATGACTCGACTCTTTCGTGAGGGTAGGACA---ACTGTTCACCCTTGCACAACAGAGTCCTCCAACTTTGTGTTGGCCATGATGGATTCCACAACTACAgtaaagccatgtcagggggatgggccactatgactatgggtgatgtgcct Alignment from GeneWise GACATGGGCAAGTTCTGCCTCACGTATGAGGCTTCCATGACTCGGCTCTTCCGAGAGGGGAGGACAGAGACTGTACGCTCCTGCACTACGGAGTCCTGCAACTTTGTGCTGGCCATGATGGACCCCACAACAACG cctcacatactaatctgcacctcctggtgtcacgtttgctctgccctcagGACATGGGTAAGTTTTGGCTGTCATTTGGGGCTTCTATGACTCGACTCTTTCGTGAGGGTAGGACA---ACTGTTCACCCTTGCACAACAGAGTCCTCCAACTTTGTGTTGGCCATGATGGATTCCACAACTACAgtaaagccatgtcagggggatgggccactatgactatgggtgatgtgcct #### Cpt1a_ID43_15 --> 0 - 0 Original Alignment GCAGAGCAGAGGTTCAAGCTGTTCAAGATAGCTTGTGAAAAGCACCAGCACCTGTACCGCCTCGCCATGACGGGCGCTGGCATCGACCGCCACCTCTTCTGCCTCTATGTGGTGTCCAAGTATCTGGCAGTCGACTCACCTTTCCTGAAGGAG acctttgaaggatccattgtttggcagaaagatgtgtcctgtgttgtcagGCAGAACAGAGGTTCAAACTTTTCCAGTTGGCTTGCAAAAAGCACCAGCACTGGCACTGCCTTACAACAACTGGGGCTGGCATTGACCGTCACCTTTTCTGCCTTTATGTGGTGTGTAAGTATCCGACTGTTGCCTCACTTTTCCTTAGGGAGgtatgcagtgtgacaagcctggcatatctgtgctagaaagaatttccctg Alignment from CESAR GCAGAGCAGAGGTTCAAGCTGTTCAAGATAGCTTGTGAAAAGCACCAGCACCTGTACCGCCTCGCCATGACGGGCGCTGGCATCGACCGCCACCTCTTCTGCCTCTATGTGGTGTCCAAGTATCTGGCAGTCGACTCACCTTTCCTGAAGGAG acctttgaaggatccattgtttggcagaaagatgtgtcctgtgttgtcagGCAGAACAGAGGTTCAAACTTTTCCAGTTGGCTTGCAAAAAGCACCAGCACTGGCACTGCCTTACAACAACTGGGGCTGGCATTGACCGTCACCTTTTCTGCCTTTATGTGGTGTGTAAGTATCCGACTGTTGCCTCACTTTTCCTTAGGGAGgtatgcagtgtgacaagcctggcatatctgtgctagaaagaatttccctg Alignment from Spaln_aa2Genome GCAGAGCAGAGGTTCAAGCTGTTCAAGATAGCTTGTGAAAAGCACCAGCACCTGTACCGCCTCGCCATGACGGGCGCTGGCATCGACCGCCACCTCTTCTGCCTCTATGTGGTGTCCAAGTATCTGGCAGTCGACTCACCTTTCCTGAAGGAG acctttgaaggatccattgtttggcagaaagatgtgtcctgtgttgtcagGCAGAACAGAGGTTCAAACTTTTCCAGTTGGCTTGCAAAAAGCACCAGCACTGGCACTGCCTTACAACAACTGGGGCTGGCATTGACCGTCACCTTTTCTGCCTTTATGTGGTGTGTAAGTATCCGACTGTTGCCTCACTTTTCCTTAGGGAGgtatgcagtgtgacaagcctggcatatctgtgctagaaagaatttccctg Alignment from Spaln_nt2Genome GCAGAGCAGAGGTTCAAGCTGTTCAAGATAGCTTGTGAAAAGCACCAGCACCTGTACCGCCTCGCCATGACGGGCGCTGGCATCGACCGCCACCTCTTCTGCCTCTATGTGGTGTCCAAGTATCTGGCAGTCGACTCACCTTTCCTGAAGGAG acctttgaaggatccattgtttggcagaaagatgtgtcctgtgttgtcagGCAGAACAGAGGTTCAAACTTTTCCAGTTGGCTTGCAAAAAGCACCAGCACTGGCACTGCCTTACAACAACTGGGGCTGGCATTGACCGTCACCTTTTCTGCCTTTATGTGGTGTGTAAGTATCCGACTGTTGCCTCACTTTTCCTTAGGGAGgtatgcagtgtgacaagcctggcatatctgtgctagaaagaatttccctg Alignment from Pairagon GCAGAGCAGAGGTTCAAGCTGTTCAAGATAGCTTGTGAAAAGCACCAGCACCTGTACCGCCTCGCCATGACGGGCGCTGGCATCGACCGCCACCTCTTCTGCCTCTATGTGGTGTCCAAGTATCTGGCAGTCGACTCACCTTTCCTGAAGGAG acctttgaaggatccattgtttggcagaaagatgtgtcctgtgttgtcagGCAGAACAGAGGTTCAAACTTTTCCAGTTGGCTTGCAAAAAGCACCAGCACTGGCACTGCCTTACAACAACTGGGGCTGGCATTGACCGTCACCTTTTCTGCCTTTATGTGGTGTGTAAGTATCCGACTGTTGCCTCACTTTTCCTTAGGGAGgtatgcagtgtgacaagcctggcatatctgtgctagaaagaatttccctg Alignment from Exonerate_protein2genome GCAGAGCAGAGGTTCAAGCTGTTCAAGATAGCTTGTGAAAAGCACCAGCACCTGTACCGCCTCGCCATGACGGGCGCTGGCATCGACCGCCACCTCTTCTGCCTCTATGTGGTGTCCAAGTATCTGGCAGTCGACTCACCTTTCCTGAAGGAG acctttgaaggatccattgtttggcagaaagatgtgtcctgtgttgtcagGCAGAACAGAGGTTCAAACTTTTCCAGTTGGCTTGCAAAAAGCACCAGCACTGGCACTGCCTTACAACAACTGGGGCTGGCATTGACCGTCACCTTTTCTGCCTTTATGTGGTGTGTAAGTATCCGACTGTTGCCTCACTTTTCCTTAGGGAGgtatgcagtgtgacaagcctggcatatctgtgctagaaagaatttccctg Alignment from Exonerate_coding2genome GCAGAGCAGAGGTTCAAGCTGTTCAAGATAGCTTGTGAAAAGCACCAGCACCTGTACCGCCTCGCCATGACGGGCGCTGGCATCGACCGCCACCTCTTCTGCCTCTATGTGGTGTCCAAGTATCTGGCAGTCGACTCACCTTTCCTGAAGGAG acctttgaaggatccattgtttggcagaaagatgtgtcctgtgttgtcagGCAGAACAGAGGTTCAAACTTTTCCAGTTGGCTTGCAAAAAGCACCAGCACTGGCACTGCCTTACAACAACTGGGGCTGGCATTGACCGTCACCTTTTCTGCCTTTATGTGGTGTGTAAGTATCCGACTGTTGCCTCACTTTTCCTTAGGGAGgtatgcagtgtgacaagcctggcatatctgtgctagaaagaatttccctg Alignment from GeneWise GCAGAGCAGAGGTTCAAGCTGTTCAAGATAGCTTGTGAAAAGCACCAGCACCTGTACCGCCTCGCCATGACGGGCGCTGGCATCGACCGCCACCTCTTCTGCCTCTATGTGGTGTCCAAGTATCTGGCAGTCGACTCACCTTTCCTGAAGGAG acctttgaaggatccattgtttggcagaaagatgtgtcctgtgttgtcagGCAGAACAGAGGTTCAAACTTTTCCAGTTGGCTTGCAAAAAGCACCAGCACTGGCACTGCCTTACAACAACTGGGGCTGGCATTGACCGTCACCTTTTCTGCCTTTATGTGGTGTGTAAGTATCCGACTGTTGCCTCACTTTTCCTTAGGGAGgtatgcagtgtgacaagcctggcatatctgtgctagaaagaatttccctg #### Cpt1a_ID44_16 --> 0 - 0 Original Alignment GTACTGTCTGAGCCATGGAGGTTGTCCACGAGCCAGACTCCTCAGCAGCAGGTGGAACTGTTTGACTTTGAGAAATACCCTGACTATGTGTCCTGTGGCGGGGGCTTTGGGCCG cgtagaccccatcatgtaactgtccacagaattttttactttgtatccagCTACTCTCTGAGCCATGGAGGCTATCGACAAGCCAAACACCACAGCAGCAGGTGGAACTGTTTGACTTTGAGAAATATCCTGATTATGTGTCTTGTGGTGGGGGTTTTGGGCCAgtgaggaagactgaccttaactcctctagtctagtcacttagtaaatagc Alignment from CESAR GTACTGTCTGAGCCATGGAGGTTGTCCACGAGCCAGACTCCTCAGCAGCAGGTGGAACTGTTTGACTTTGAGAAATACCCTGACTATGTGTCCTGTGGCGGGGGCTTTGGGCCG cgtagaccccatcatgtaactgtccacagaattttttactttgtatccagCTACTCTCTGAGCCATGGAGGCTATCGACAAGCCAAACACCACAGCAGCAGGTGGAACTGTTTGACTTTGAGAAATATCCTGATTATGTGTCTTGTGGTGGGGGTTTTGGGCCAgtgaggaagactgaccttaactcctctagtctagtcacttagtaaatagc Alignment from Spaln_aa2Genome GTACTGTCTGAGCCATGGAGGTTGTCCACGAGCCAGACTCCTCAGCAGCAGGTGGAACTGTTTGACTTTGAGAAATACCCTGACTATGTGTCCTGTGGCGGGGGCTTTGGGCCG cgtagaccccatcatgtaactgtccacagaattttttactttgtatccagCTACTCTCTGAGCCATGGAGGCTATCGACAAGCCAAACACCACAGCAGCAGGTGGAACTGTTTGACTTTGAGAAATATCCTGATTATGTGTCTTGTGGTGGGGGTTTTGGGCCAgtgaggaagactgaccttaactcctctagtctagtcacttagtaaatagc Alignment from Spaln_nt2Genome GTACTGTCTGAGCCATGGAGGTTGTCCACGAGCCAGACTCCTCAGCAGCAGGTGGAACTGTTTGACTTTGAGAAATACCCTGACTATGTGTCCTGTGGCGGGGGCTTTGGGCCG cgtagaccccatcatgtaactgtccacagaattttttactttgtatccagCTACTCTCTGAGCCATGGAGGCTATCGACAAGCCAAACACCACAGCAGCAGGTGGAACTGTTTGACTTTGAGAAATATCCTGATTATGTGTCTTGTGGTGGGGGTTTTGGGCCAgtgaggaagactgaccttaactcctctagtctagtcacttagtaaatagc Alignment from Pairagon GTACTGTCTGAGCCATGGAGGTTGTCCACGAGCCAGACTCCTCAGCAGCAGGTGGAACTGTTTGACTTTGAGAAATACCCTGACTATGTGTCCTGTGGCGGGGGCTTTGGGCCG cgtagaccccatcatgtaactgtccacagaattttttactttgtatccagCTACTCTCTGAGCCATGGAGGCTATCGACAAGCCAAACACCACAGCAGCAGGTGGAACTGTTTGACTTTGAGAAATATCCTGATTATGTGTCTTGTGGTGGGGGTTTTGGGCCAgtgaggaagactgaccttaactcctctagtctagtcacttagtaaatagc Alignment from Exonerate_protein2genome GTACTGTCTGAGCCATGGAGGTTGTCCACGAGCCAGACTCCTCAGCAGCAGGTGGAACTGTTTGACTTTGAGAAATACCCTGACTATGTGTCCTGTGGCGGGGGCTTTGGGCCG cgtagaccccatcatgtaactgtccacagaattttttactttgtatccagCTACTCTCTGAGCCATGGAGGCTATCGACAAGCCAAACACCACAGCAGCAGGTGGAACTGTTTGACTTTGAGAAATATCCTGATTATGTGTCTTGTGGTGGGGGTTTTGGGCCAgtgaggaagactgaccttaactcctctagtctagtcacttagtaaatagc Alignment from Exonerate_coding2genome GTACTGTCTGAGCCATGGAGGTTGTCCACGAGCCAGACTCCTCAGCAGCAGGTGGAACTGTTTGACTTTGAGAAATACCCTGACTATGTGTCCTGTGGCGGGGGCTTTGGGCCG cgtagaccccatcatgtaactgtccacagaattttttactttgtatccagCTACTCTCTGAGCCATGGAGGCTATCGACAAGCCAAACACCACAGCAGCAGGTGGAACTGTTTGACTTTGAGAAATATCCTGATTATGTGTCTTGTGGTGGGGGTTTTGGGCCAgtgaggaagactgaccttaactcctctagtctagtcacttagtaaatagc Alignment from GeneWise GTACTGTCTGAGCCATGGAGGTTGTCCACGAGCCAGACTCCTCAGCAGCAGGTGGAACTGTTTGACTTTGAGAAATACCCTGACTATGTGTCCTGTGGCGGGGGCTTTGGGCCG cgtagaccccatcatgtaactgtccacagaattttttactttgtatccagCTACTCTCTGAGCCATGGAGGCTATCGACAAGCCAAACACCACAGCAGCAGGTGGAACTGTTTGACTTTGAGAAATATCCTGATTATGTGTCTTGTGGTGGGGGTTTTGGGCCAgtgaggaagactgaccttaactcctctagtctagtcacttagtaaatagc #### Crtac1_ID8459_12 --> 2 - 0 Original Alignment gaCGGGATGAAGCCAGCAGTGTGGAGGTGACGTGGCCAGATGGCAAGATGGTGAGCCGAAGTGTGGCCAGCGAGGAGATGAACTCGGTGTTGGAGATCCTCTACCCCCAGGATGAGGACAAACTTCAGAACACAGCCCCACTAGAG tgttaagtataccccttccttcgagttttgacaggctgtattttgcacaggcCAGGATGAGGCCAGTAGTGTGGAAGTGACTTGGCCTGATGGCAAGATGGTGAGCCAAAGTGTTGCCAGTGAGGAGATGAACTCAGTGTTAGAGATTCTCTGCCCTCAAGACAAGGACAAACTTCAAAACACAGCCCCCCTAGAGgtaagtcaattctcccaggctggccatatagctgagaggatgtaaaaaga Alignment from CESAR gaCGGGATGAAGCCAGCAGTGTGGAGGTGACGTGGCCAGATGGCAAGATGGTGAGCCGAAGTGTGGCCAGCGAGGAGATGAACTCGGTGTTGGAGATCCTCTACCCCCAGGATGAGGACAAACTTCAGAACACAGCCCCACTAGAG tgttaagtataccccttccttcgagttttgacaggctgtattttgcacaggcCAGGATGAGGCCAGTAGTGTGGAAGTGACTTGGCCTGATGGCAAGATGGTGAGCCAAAGTGTTGCCAGTGAGGAGATGAACTCAGTGTTAGAGATTCTCTGCCCTCAAGACAAGGACAAACTTCAAAACACAGCCCCCCTAGAGgtaagtcaattctcccaggctggccatatagctgagaggatgtaaaaaga Alignment from Spaln_aa2Genome GACGGGATGAAGCCAGCAGTGTGGAGGTGACGTGGCCAGATGGCAAGATGGTGAGCCGAAGTGTGGCCAGCGAGGAGATGAACTCGGTGTTGGAGATCCTCTACCCCCAGGATGAGGACAAACTTCAGAACACAGCCCCACTAGAG tgttaagtataccccttccttcgagttttgacaggctgtattttgcacagGCCAGGATGAGGCCAGTAGTGTGGAAGTGACTTGGCCTGATGGCAAGATGGTGAGCCAAAGTGTTGCCAGTGAGGAGATGAACTCAGTGTTAGAGATTCTCTGCCCTCAAGACAAGGACAAACTTCAAAACACAGCCCCCCTAGAGgtaagtcaattctcccaggctggccatatagctgagaggatgtaaaaaga Alignment from Spaln_nt2Genome GACGGGATGAAGCCAGCAGTGTGGAGGTGACGTGGCCAGATGGCAAGATGGTGAGCCGAAGTGTGGCCAGCGAGGAGATGAACTCGGTGTTGGAGATCCTCTACCCCCAGGATGAGGACAAACTTCAGAACACAGCCCCACTAGAG tgttaagtataccccttccttcgagttttgacaggctgtattttgcacagGCCAGGATGAGGCCAGTAGTGTGGAAGTGACTTGGCCTGATGGCAAGATGGTGAGCCAAAGTGTTGCCAGTGAGGAGATGAACTCAGTGTTAGAGATTCTCTGCCCTCAAGACAAGGACAAACTTCAAAACACAGCCCCCCTAGAGgtaagtcaattctcccaggctggccatatagctgagaggatgtaaaaaga Alignment from Pairagon GACGGGATGAAGCCAGCAGTGTGGAGGTGACGTGGCCAGATGGCAAGATGGTGAGCCGAAGTGTGGCCAGCGAGGAGATGAACTCGGTGTTGGAGATCCTCTACCCCCAGGATGAGGACAAACTTCAGAACACAGCCCCACTAGAG tgttaagtataccccttccttcgagttttgacaggctgtattttgcacagGCCAGGATGAGGCCAGTAGTGTGGAAGTGACTTGGCCTGATGGCAAGATGGTGAGCCAAAGTGTTGCCAGTGAGGAGATGAACTCAGTGTTAGAGATTCTCTGCCCTCAAGACAAGGACAAACTTCAAAACACAGCCCCCCTAGAGgtaagtcaattctcccaggctggccatatagctgagaggatgtaaaaaga Alignment from Exonerate_protein2genome GACGGGATGAAGCCAGCAGTGTGGAGGTGACGTGGCCAGATGGCAAGATGGTGAGCCGAAGTGTGGCCAGCGAGGAGATGAACTCGGTGTTGGAGATCCTCTACCCCCAGGATGAGGACAAACTTCAGAACACAGCCCCACTAGAG tgttaagtataccccttccttcgagttttgacaggctgtattttgcacagGCCAGGATGAGGCCAGTAGTGTGGAAGTGACTTGGCCTGATGGCAAGATGGTGAGCCAAAGTGTTGCCAGTGAGGAGATGAACTCAGTGTTAGAGATTCTCTGCCCTCAAGACAAGGACAAACTTCAAAACACAGCCCCCCTAGAGgtaagtcaattctcccaggctggccatatagctgagaggatgtaaaaaga Alignment from Exonerate_coding2genome GACGGGATGAAGCCAGCAGTGTGGAGGTGACGTGGCCAGATGGCAAGATGGTGAGCCGAAGTGTGGCCAGCGAGGAGATGAACTCGGTGTTGGAGATCCTCTACCCCCAGGATGAGGACAAACTTCAGAACACAGCCCCACTAGAG tgttaagtataccccttccttcgagttttgacaggctgtattttgcacagGCCAGGATGAGGCCAGTAGTGTGGAAGTGACTTGGCCTGATGGCAAGATGGTGAGCCAAAGTGTTGCCAGTGAGGAGATGAACTCAGTGTTAGAGATTCTCTGCCCTCAAGACAAGGACAAACTTCAAAACACAGCCCCCCTAGAGgtaagtcaattctcccaggctggccatatagctgagaggatgtaaaaaga Alignment from GeneWise GACGGGATGAAGCCAGCAGTGTGGAGGTGACGTGGCCAGATGGCAAGATGGTGAGCCGAAGTGTGGCCAGCGAGGAGATGAACTCGGTGTTGGAGATCCTCTACCCCCAGGATGAGGACAAACTTCAGAACACAGCCCCACTAGAG tgttaagtataccccttccttcgagttttgacaggctgtattttgcacagGCCAGGATGAGGCCAGTAGTGTGGAAGTGACTTGGCCTGATGGCAAGATGGTGAGCCAAAGTGTTGCCAGTGAGGAGATGAACTCAGTGTTAGAGATTCTCTGCCCTCAAGACAAGGACAAACTTCAAAACACAGCCCCCCTAGAGgtaagtcaattctcccaggctggccatatagctgagaggatgtaaaaaga #### Crtac1_ID8463_9 --> 1 - 1 Original Alignment tGTCATCCGCAGGGAGCACGGGGACCCTCTCATCGAGGAGCTCAATCCTGGTGACGCCCTAGAGCCTGAGGGCCGGGGTACAg agctgtttgacatacccaaggaataactacctttaaaatttcctttgcagtGTCATCCACAAAGACCATGGGGACCCTCTGATTGAGGAGCTCAATCCAGGTGATGCCCTAAAGCCTGAGGGTTGGGGTAAAggtgagtgacttgaaggtggttggactggacctttcttagatgatagtgat Alignment from CESAR tGTCATCCGCAGGGAGCACGGGGACCCTCTCATCGAGGAGCTCAATCCTGGTGACGCCCTAGAGCCTGAGGGCCGGGGTACAg agctgtttgacatacccaaggaataactacctttaaaatttcctttgcagtGTCATCCACAAAGACCATGGGGACCCTCTGATTGAGGAGCTCAATCCAGGTGATGCCCTAAAGCCTGAGGGTTGGGGTAAAggtgagtgacttgaaggtggttggactggacctttcttagatgatagtgat Alignment from Spaln_aa2Genome TGTCATCCGCAGGGAGCACGGGGACCCTCTCATCGAGGAGCTCAATCCTGGTGACGCCCTAGAGCCTGAGGGCCGGGGTACAG agctgtttgacatacccaaggaataactacctttaaaatttcctttgcagTGTCATCCACAAAGACCATGGGGACCCTCTGATTGAGGAGCTCAATCCAGGTGATGCCCTAAAGCCTGAGGGTTGGGGTAAAGgtgagtgacttgaaggtggttggactggacctttcttagatgatagtgat Alignment from Spaln_nt2Genome TGTCATCCGCAGGGAGCACGGGGACCCTCTCATCGAGGAGCTCAATCCTGGTGACGCCCTAGAGCCTGAGGGCCGGGGTACAG agctgtttgacatacccaaggaataactacctttaaaatttcctttgcagTGTCATCCACAAAGACCATGGGGACCCTCTGATTGAGGAGCTCAATCCAGGTGATGCCCTAAAGCCTGAGGGTTGGGGTAAAGgtgagtgacttgaaggtggttggactggacctttcttagatgatagtgat Alignment from Pairagon TGTCATCCGCAGGGAGCACGGGGACCCTCTCATCGAGGAGCTCAATCCTGGTGACGCCCTAGAGCCTGAGGGCCGGGGTACAG agctgtttgacatacccaaggaataactacctttaaaatttcctttgcagTGTCATCCACAAAGACCATGGGGACCCTCTGATTGAGGAGCTCAATCCAGGTGATGCCCTAAAGCCTGAGGGTTGGGGTAAAGgtgagtgacttgaaggtggttggactggacctttcttagatgatagtgat Alignment from Exonerate_protein2genome TGTCATCCGCAGGGAGCACGGGGACCCTCTCATCGAGGAGCTCAATCCTGGTGACGCCCTAGAGCCTGAGGGCCGGGGTACAG agctgtttgacatacccaaggaataactacctttaaaatttcctttgcagTGTCATCCACAAAGACCATGGGGACCCTCTGATTGAGGAGCTCAATCCAGGTGATGCCCTAAAGCCTGAGGGTTGGGGTAAAGgtgagtgacttgaaggtggttggactggacctttcttagatgatagtgat Alignment from Exonerate_coding2genome TGTCATCCGCAGGGAGCACGGGGACCCTCTCATCGAGGAGCTCAATCCTGGTGACGCCCTAGAGCCTGAGGGCCGGGGTACAG agctgtttgacatacccaaggaataactacctttaaaatttcctttgcagTGTCATCCACAAAGACCATGGGGACCCTCTGATTGAGGAGCTCAATCCAGGTGATGCCCTAAAGCCTGAGGGTTGGGGTAAAGgtgagtgacttgaaggtggttggactggacctttcttagatgatagtgat Alignment from GeneWise TGTCATCCGCAGGGAGCACGGGGACCCTCTCATCGAGGAGCTCAATCCTGGTGACGCCCTAGAGCCTGAGGGCCGGGGTACAG agctgtttgacatacccaaggaataactacctttaaaatttcctttgcagTGTCATCCACAAAGACCATGGGGACCCTCTGATTGAGGAGCTCAATCCAGGTGATGCCCTAAAGCCTGAGGGTTGGGGTAAAGgtgagtgacttgaaggtggttggactggacctttcttagatgatagtgat #### Crtac1_ID8477_5 --> 0 - 1 Original Alignment GGCTCTGGAAGATACTCTATCTACATAGCCAACTATGCCTATGGTGATGTGGGGCCTGATGCCCTCATCGAAATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTGGCACTCAGGGACGTGGCGGCTGAGGCTGGGGTCAGCAAGTACACAg cacaacaaaggagactgttgggtgggtgcttttcctgttctgggatccagGGCTCGGGTAGATACTCTATTTACCTATCCAACTATGCATATGGAGAG---GGGACAGATGCCCTA------ATGGACCTGGAA---CGTGATCTCTCACGGGGGGTCCTAGCACTAAGGGATGTCGCAGCTGAGTCTGGGGTTAGCAAATACACCtgtaatttagaattgttcttgcccttcaacattcaggaggacaaagaatat Alignment from CESAR GGCTCTGGAAGATACTCTATCTACATAGCCAACTATGCCTATGGTGATGTGGGGCCTGATGCCCTCATCGAAATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTGGCACTCAGGGACGTGGCGGCTGAGGCTGGGGTCAGCAAGTACACAg cacaacaaaggagactgttgggtgggtgcttttcctgttctgggatccagGGCTCGGGTAGATACTCTATTTACCTATCCAACTATGCATATGGAGAG---GGGACAGATGCCCTA------ATGGACCTGGAA---CGTGATCTCTCACGGGGGGTCCTAGCACTAAGGGATGTCGCAGCTGAGTCTGGGGTTAGCAAATACACCtgtaatttagaattgttcttgcccttcaacattcaggaggacaaagaatat Alignment from Spaln_aa2Genome GGCTCTGGAAGATACTCTATCTACATAGCCAACTATGCCTATGGTGATGTGGGGCCTGATGCCCTCATCGAAATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTGGCACTCAGGGACGTGGCGGCTGAGGCTGGGGTCAGCAAGTACACAG cacaacaaaggagactgttgggtgggtgcttttcctgttctgggatccagGGCTCGGGTAGATACTCTATTTACCTATCCAACTATGCATATGGAGAG---GGGACAGATGCCCTAATGGACCTGGAA---------CGTGATCTCTCACGGGGGGTCCTAGCACTAAGGGATGTCGCAGCTGAGTCTGGGGTTAGCAAATACACCTgtaatttagaattgttcttgcccttcaacattcaggaggacaaagaatat Alignment from Spaln_nt2Genome GGCTCTGGAAGATACTCTATCTACATAGCCAACTATGCCTATGGTGATGTGGGGCCTGATGCCCTCATCGAAATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTGGCACTCAGGGACGTGGCGGCTGAGGCTGGGGTCAGCAAGTACACAG cacaacaaaggagactgttgggtgggtgcttttcctgttctgggatccagGGCTCGGGTAGATACTCTATTTACCTATCCAACTATGCATATGGAGA---GGGGACAGATGCCCTAATGGACCTGGAAC---------GTGATCTCTCACGGGGGGTCCTAGCACTAAGGGATGTCGCAGCTGAGTCTGGGGTTAGCAAATACACCTgtaatttagaattgttcttgcccttcaacattcaggaggacaaagaatat Alignment from Pairagon GGCTCTGGAAGATACTCTATCTACATAGCCAACTATGCCTATGGTGATGTGGGGCCTGATGCCCTCATCGAAATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTGGCACTCAGGGACGTGGCGGCTGAGGCTGGGGTCAGCAAGTACACAG cacaacaaaggagactgttgggtgggtgcttttcctgttctgggatccagGGCTCGGGTAGATACTCTATTTACCTATCCAACTATGCATATGGAGA---GGGGACAGATGCCCTAATGGACCTGGAAC---------GTGATCTCTCACGGGGGGTCCTAGCACTAAGGGATGTCGCAGCTGAGTCTGGGGTTAGCAAATACACCTgtaatttagaattgttcttgcccttcaacattcaggaggacaaagaatat Alignment from Exonerate_protein2genome GGCTCTGGAAGATACTCTATCTACATAGCCAACTATGCCTATGGTGATGTGGGGCCTGATGCCCTCATCGAAATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTGGCACTCAGGGACGTGGCGGCTGAGGCTGGGGTCAGCAAGTACACAG cacaacaaaggagactgttgggtgggtgcttttcctgttctgggatccagGGCTCGGGTAGATACTCTATTTACCTATCCAACTATGCATATGGAGAG---GGGACAGATGCCCTAATGGACCTGGAA---------CGTGATCTCTCACGGGGGGTCCTAGCACTAAGGGATGTCGCAGCTGAGTCTGGGGTTAGCAAATACACCTgtaatttagaattgttcttgcccttcaacattcaggaggacaaagaatat Alignment from Exonerate_coding2genome GGCTCTGGAAGATACTCTATCTACATAGCCAACTATGCCTATGGTGATGTGGGGCCTGATGCCCTCATCGAAATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTGGCACTCAGGGACGTGGCGGCTGAGGCTGGGGTCAGCAAGTACACAG cacaacaaaggagactgttgggtgggtgcttttcctgttctgggatccagGGCTCGGGTAGATACTCTATTTACCTATCCAACTATGCATATGGAGAG---GGGACAGATGCCCTAATGGACCTGGAA---------CGTGATCTCTCACGGGGGGTCCTAGCACTAAGGGATGTCGCAGCTGAGTCTGGGGTTAGCAAATACACCTgtaatttagaattgttcttgcccttcaacattcaggaggacaaagaatat Alignment from GeneWise GGCTCTGGAAGATACTCTATCTACATAGCCAACTATGCCTATGGTGATGTGGGGCCTGATGCCCTCATCGAAATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTGGCACTCAGGGACGTGGCGGCTGAGGCTGGGGTCAGCAAGTACACAG cacaacaaaggagactgttgggtgggtgcttttcctgttctgggatccagGGCTCGGGTAGATACTCTATTTACCTATCCAACTATGCATATGGAGAG---GGGACAGATGCCCTAATGGACCTGGAA---------CGTGATCTCTCACGGGGGGTCCTAGCACTAAGGGATGTCGCAGCTGAGTCTGGGGTTAGCAAATACACCTgtaatttagaattgttcttgcccttcaacattcaggaggacaaagaatat #### Crtac1_ID8500_2 --> 0 - 2 Original Alignment ATGGTCAGGATGGCTTTGCTCCTGCTGCCGCCCCTGTGGCTTCTGCCTCTCACTGGGGGATCCCAGAGGGCTGAGCCCATGTTCACTGCAGTCACCAACTCAGTCCTGCCCCCTGACTATGACAGCAACCCCACCCAGCTCAACTATGGAGTGGCAGTGACAGATGTGGACCATGATGGGGACTTCGAGATCGTTGTGGCGgg ccgggagactcaaaccttgtgacccctgtcgtgcttgtttttacctccagATGGTGCGGATGGCCTTACTCCTCCTGCCACCTCTGTGGCTGCTGCCACTCACTGGGGGATCCCAGCGATCTGAGACCATGTTTACTGCAGTCACCAACTCTGTCTTACGCCCAGACTATGACAGCAACCCTTCACAGCTTAATTATGGGCTGGCAGTCGCAGATGTGGACCACGATGGTGACTTTGAGGTTGTTGTGGCTgggtgagtgccttttcccctacataagcaacgttacactacagtagatggta Alignment from CESAR ATGGTCAGGATGGCTTTGCTCCTGCTGCCGCCCCTGTGGCTTCTGCCTCTCACTGGGGGATCCCAGAGGGCTGAGCCCATGTTCACTGCAGTCACCAACTCAGTCCTGCCCCCTGACTATGACAGCAACCCCACCCAGCTCAACTATGGAGTGGCAGTGACAGATGTGGACCATGATGGGGACTTCGAGATCGTTGTGGCGgg ccgggagactcaaaccttgtgacccctgtcgtgcttgtttttacctccagATGGTGCGGATGGCCTTACTCCTCCTGCCACCTCTGTGGCTGCTGCCACTCACTGGGGGATCCCAGCGATCTGAGACCATGTTTACTGCAGTCACCAACTCTGTCTTACGCCCAGACTATGACAGCAACCCTTCACAGCTTAATTATGGGCTGGCAGTCGCAGATGTGGACCACGATGGTGACTTTGAGGTTGTTGTGGCTgggtgagtgccttttcccctacataagcaacgttacactacagtagatggta Alignment from Spaln_aa2Genome ATGGTCAGGATGGCTTTGCTCCTGCTGCCGCCCCTGTGGCTTCTGCCTCTCACTGGGGGATCCCAGAGGGCTGAGCCCATGTTCACTGCAGTCACCAACTCAGTCCTGCCCCCTGACTATGACAGCAACCCCACCCAGCTCAACTATGGAGTGGCAGTGACAGATGTGGACCATGATGGGGACTTCGAGATCGTTGTGGCGGG ccgggagactcaaaccttgtgacccctgtcgtgcttgtttttacctccagATGGTGCGGATGGCCTTACTCCTCCTGCCACCTCTGTGGCTGCTGCCACTCACTGGGGGATCCCAGCGATCTGAGACCATGTTTACTGCAGTCACCAACTCTGTCTTACGCCCAGACTATGACAGCAACCCTTCACAGCTTAATTATGGGCTGGCAGTCGCAGATGTGGACCACGATGGTGACTTTGAGGTTGTTGTGGCTGGgtgagtgccttttcccctacataagcaacgttacactacagtagatggta Alignment from Spaln_nt2Genome ATGGTCAGGATGGCTTTGCTCCTGCTGCCGCCCCTGTGGCTTCTGCCTCTCACTGGGGGATCCCAGAGGGCTGAGCCCATGTTCACTGCAGTCACCAACTCAGTCCTGCCCCCTGACTATGACAGCAACCCCACCCAGCTCAACTATGGAGTGGCAGTGACAGATGTGGACCATGATGGGGACTTCGAGATCGTTGTGGCGGG ccgggagactcaaaccttgtgacccctgtcgtgcttgtttttacctccagATGGTGCGGATGGCCTTACTCCTCCTGCCACCTCTGTGGCTGCTGCCACTCACTGGGGGATCCCAGCGATCTGAGACCATGTTTACTGCAGTCACCAACTCTGTCTTACGCCCAGACTATGACAGCAACCCTTCACAGCTTAATTATGGGCTGGCAGTCGCAGATGTGGACCACGATGGTGACTTTGAGGTTGTTGTGGCTGGgtgagtgccttttcccctacataagcaacgttacactacagtagatggta Alignment from Pairagon ATGGTCAGGATGGCTTTGCTCCTGCTGCCGCCCCTGTGGCTTCTGCCTCTCACTGGGGGATCCCAGAGGGCTGAGCCCATGTTCACTGCAGTCACCAACTCAGTCCTGCCCCCTGACTATGACAGCAACCCCACCCAGCTCAACTATGGAGTGGCAGTGACAGATGTGGACCATGATGGGGACTTCGAGATCGTTGTGGCGGG ccgggagactcaaaccttgtgacccctgtcgtgcttgtttttacctccagATGGTGCGGATGGCCTTACTCCTCCTGCCACCTCTGTGGCTGCTGCCACTCACTGGGGGATCCCAGCGATCTGAGACCATGTTTACTGCAGTCACCAACTCTGTCTTACGCCCAGACTATGACAGCAACCCTTCACAGCTTAATTATGGGCTGGCAGTCGCAGATGTGGACCACGATGGTGACTTTGAGGTTGTTGTGGCTGGgtgagtgccttttcccctacataagcaacgttacactacagtagatggta Alignment from Exonerate_protein2genome ATGGTCAGGATGGCTTTGCTCCTGCTGCCGCCCCTGTGGCTTCTGCCTCTCACTGGGGGATCCCAGAGGGCTGAGCCCATGTTCACTGCAGTCACCAACTCAGTCCTGCCCCCTGACTATGACAGCAACCCCACCCAGCTCAACTATGGAGTGGCAGTGACAGATGTGGACCATGATGGGGACTTCGAGATCGTTGTGGCGGG ccgggagactcaaaccttgtgacccctgtcgtgcttgtttttacctccagATGGTGCGGATGGCCTTACTCCTCCTGCCACCTCTGTGGCTGCTGCCACTCACTGGGGGATCCCAGCGATCTGAGACCATGTTTACTGCAGTCACCAACTCTGTCTTACGCCCAGACTATGACAGCAACCCTTCACAGCTTAATTATGGGCTGGCAGTCGCAGATGTGGACCACGATGGTGACTTTGAGGTTGTTGTGGCTGGgtgagtgccttttcccctacataagcaacgttacactacagtagatggta Alignment from Exonerate_coding2genome ATGGTCAGGATGGCTTTGCTCCTGCTGCCGCCCCTGTGGCTTCTGCCTCTCACTGGGGGATCCCAGAGGGCTGAGCCCATGTTCACTGCAGTCACCAACTCAGTCCTGCCCCCTGACTATGACAGCAACCCCACCCAGCTCAACTATGGAGTGGCAGTGACAGATGTGGACCATGATGGGGACTTCGAGATCGTTGTGGCGGG ccgggagactcaaaccttgtgacccctgtcgtgcttgtttttacctccagATGGTGCGGATGGCCTTACTCCTCCTGCCACCTCTGTGGCTGCTGCCACTCACTGGGGGATCCCAGCGATCTGAGACCATGTTTACTGCAGTCACCAACTCTGTCTTACGCCCAGACTATGACAGCAACCCTTCACAGCTTAATTATGGGCTGGCAGTCGCAGATGTGGACCACGATGGTGACTTTGAGGTTGTTGTGGCTGGgtgagtgccttttcccctacataagcaacgttacactacagtagatggta Alignment from GeneWise GCTCCGAGCGCTGACCCGGGCATGGTCAGGATGGCTTTGCTCCTGCTGCCGCCCCTGTGGCTTCTGCCTCTCACTGGGGGATCCCAGAGGGCTGAGCCCATGTTCACTGCAGTCACCAACTCAGTCCTGCCCCCTGACTATGACAGCAACCCCACCCAGCTCAACTATGGAGTGGCAGTGACAGATGTGGACCATGATGGGGACTTCGAGATCGTTGTGGCGGG ccgggagactcaaaccttgtgacccctgtcgtgcttgtttttacctccag---------------------ATGGTGCGGATGGCCTTACTCCTCCTGCCACCTCTGTGGCTGCTGCCACTCACTGGGGGATCCCAGCGATCTGAGACCATGTTTACTGCAGTCACCAACTCTGTCTTACGCCCAGACTATGACAGCAACCCTTCACAGCTTAATTATGGGCTGGCAGTCGCAGATGTGGACCACGATGGTGACTTTGAGGTTGTTGTGGCTGGgtgagtgccttttcccctacataagcaacgttacactacagtagatggta #### Csf2ra_ID13437_3 --> 0 - 1 Original Alignment CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAg atagaacgctcagtgcattaccctaacctaatggctcgctgtgttggcagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTGGACGTCAATGGCACAGTTGGAGGTGCAGCCGCACATTGGAAGCTCAGCTTTGTTAATGAGggtgagaatagatgttggggactccatgatacactttctactaagctatca Alignment from CESAR CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAg atagaacgctcagtgcattaccctaacctaatggctcgctgtgttggcagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTGGACGTCAATGGCACAGTTGGAGGTGCAGCCGCACATTGGAAGCTCAGCTTTGTTAATGAGggtgagaatagatgttggggactccatgatacactttctactaagctatca Alignment from Spaln_aa2Genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG atagaacgctcagtgcattaccctaacctaatggctcgctgtgttggcagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTGGACGTCAATGGCACAGTTGGAGGTGCAGCCGCACATTGGAAGCTCAGCTTTGTTAATGAGGgtgagaatagatgttggggactccatgatacactttctactaagctatca Alignment from Spaln_nt2Genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG atagaacgctcagtgcattaccctaacctaatggctcgctgtgttggcagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTGGACGTCAATGGCACAGTTGGAGGTGCAGCCGCACATTGGAAGCTCAGCTTTGTTAATGAGGgtgagaatagatgttggggactccatgatacactttctactaagctatca Alignment from Pairagon CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG atagaacgctcagtgcattaccctaacctaatggctcgctgtgttggcagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTGGACGTCAATGGCACAGTTGGAGGTGCAGCCGCACATTGGAAGCTCAGCTTTGTTAATGAGGgtgagaatagatgttggggactccatgatacactttctactaagctatca Alignment from Exonerate_protein2genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG atagaacgctcagtgcattaccctaacctaatggctcgctgtgttggcagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTGGACGTCAATGGCACAGTTGGAGGTGCAGCCGCACATTGGAAGCTCAGCTTTGTTAATGAGGgtgagaatagatgttggggactccatgatacactttctactaagctatca Alignment from Exonerate_coding2genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG atagaacgctcagtgcattaccctaacctaatggctcgctgtgttggcagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTGGACGTCAATGGCACAGTTGGAGGTGCAGCCGCACATTGGAAGCTCAGCTTTGTTAATGAGGgtgagaatagatgttggggactccatgatacactttctactaagctatca Alignment from GeneWise CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG atagaacgctcagtgcattaccctaacctaatggctcgctgtgttggcagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTGGACGTCAATGGCACAGTTGGAGGTGCAGCCGCACATTGGAAGCTCAGCTTTGTTAATGAGGgtgagaatagatgttggggactccatgatacactttctactaagctatca #### Cst6_ID938_2 --> 0 - 0 Original Alignment CTGGTGGCTGGCATCAAGTACTACCTGACTTTGGACATAGAAAGCACAGAGTGCCGAAAGACCAGAGTCTCTGGAGAACACATGGACCTCACCACCTGCCCTCTGGCTGCAGGGGGGCAGCAGGAG tggagcggttgatagctaaagctgactataacttctctgtttatctgcagCTGGCAGCTGGAATTGAGTATCACCTAACCTTAGACATTGAGGGCACCAAGTGCCGCAAGACAAAACTCTCTGGCAAACACATGGACCTCACTACCTGCCCACTGGCTGCAGGGGGACAGCAAGAGgtatgaatattgattttgtcacccccccgacgccatgtcgcctggagaag Alignment from CESAR CTGGTGGCTGGCATCAAGTACTACCTGACTTTGGACATAGAAAGCACAGAGTGCCGAAAGACCAGAGTCTCTGGAGAACACATGGACCTCACCACCTGCCCTCTGGCTGCAGGGGGGCAGCAGGAG tggagcggttgatagctaaagctgactataacttctctgtttatctgcagCTGGCAGCTGGAATTGAGTATCACCTAACCTTAGACATTGAGGGCACCAAGTGCCGCAAGACAAAACTCTCTGGCAAACACATGGACCTCACTACCTGCCCACTGGCTGCAGGGGGACAGCAAGAGgtatgaatattgattttgtcacccccccgacgccatgtcgcctggagaag Alignment from Spaln_aa2Genome CTGGTGGCTGGCATCAAGTACTACCTGACTTTGGACATAGAAAGCACAGAGTGCCGAAAGACCAGAGTCTCTGGAGAACACATGGACCTCACCACCTGCCCTCTGGCTGCAGGGGGGCAGCAGGAG tggagcggttgatagctaaagctgactataacttctctgtttatctgcagCTGGCAGCTGGAATTGAGTATCACCTAACCTTAGACATTGAGGGCACCAAGTGCCGCAAGACAAAACTCTCTGGCAAACACATGGACCTCACTACCTGCCCACTGGCTGCAGGGGGACAGCAAGAGgtatgaatattgattttgtcacccccccgacgccatgtcgcctggagaag Alignment from Spaln_nt2Genome CTGGTGGCTGGCATCAAGTACTACCTGACTTTGGACATAGAAAGCACAGAGTGCCGAAAGACCAGAGTCTCTGGAGAACACATGGACCTCACCACCTGCCCTCTGGCTGCAGGGGGGCAGCAGGAG tggagcggttgatagctaaagctgactataacttctctgtttatctgcagCTGGCAGCTGGAATTGAGTATCACCTAACCTTAGACATTGAGGGCACCAAGTGCCGCAAGACAAAACTCTCTGGCAAACACATGGACCTCACTACCTGCCCACTGGCTGCAGGGGGACAGCAAGAGgtatgaatattgattttgtcacccccccgacgccatgtcgcctggagaag Alignment from Pairagon CTGGTGGCTGGCATCAAGTACTACCTGACTTTGGACATAGAAAGCACAGAGTGCCGAAAGACCAGAGTCTCTGGAGAACACATGGACCTCACCACCTGCCCTCTGGCTGCAGGGGGGCAGCAGGAG tggagcggttgatagctaaagctgactataacttctctgtttatctgcagCTGGCAGCTGGAATTGAGTATCACCTAACCTTAGACATTGAGGGCACCAAGTGCCGCAAGACAAAACTCTCTGGCAAACACATGGACCTCACTACCTGCCCACTGGCTGCAGGGGGACAGCAAGAGgtatgaatattgattttgtcacccccccgacgccatgtcgcctggagaag Alignment from Exonerate_protein2genome CTGGTGGCTGGCATCAAGTACTACCTGACTTTGGACATAGAAAGCACAGAGTGCCGAAAGACCAGAGTCTCTGGAGAACACATGGACCTCACCACCTGCCCTCTGGCTGCAGGGGGGCAGCAGGAG tggagcggttgatagctaaagctgactataacttctctgtttatctgcagCTGGCAGCTGGAATTGAGTATCACCTAACCTTAGACATTGAGGGCACCAAGTGCCGCAAGACAAAACTCTCTGGCAAACACATGGACCTCACTACCTGCCCACTGGCTGCAGGGGGACAGCAAGAGgtatgaatattgattttgtcacccccccgacgccatgtcgcctggagaag Alignment from Exonerate_coding2genome CTGGTGGCTGGCATCAAGTACTACCTGACTTTGGACATAGAAAGCACAGAGTGCCGAAAGACCAGAGTCTCTGGAGAACACATGGACCTCACCACCTGCCCTCTGGCTGCAGGGGGGCAGCAGGAG tggagcggttgatagctaaagctgactataacttctctgtttatctgcagCTGGCAGCTGGAATTGAGTATCACCTAACCTTAGACATTGAGGGCACCAAGTGCCGCAAGACAAAACTCTCTGGCAAACACATGGACCTCACTACCTGCCCACTGGCTGCAGGGGGACAGCAAGAGgtatgaatattgattttgtcacccccccgacgccatgtcgcctggagaag Alignment from GeneWise CTGGTGGCTGGCATCAAGTACTACCTGACTTTGGACATAGAAAGCACAGAGTGCCGAAAGACCAGAGTCTCTGGAGAACACATGGACCTCACCACCTGCCCTCTGGCTGCAGGGGGGCAGCAGGAG tggagcggttgatagctaaagctgactataacttctctgtttatctgcagCTGGCAGCTGGAATTGAGTATCACCTAACCTTAGACATTGAGGGCACCAAGTGCCGCAAGACAAAACTCTCTGGCAAACACATGGACCTCACTACCTGCCCACTGGCTGCAGGGGGACAGCAAGAGgtatgaatattgattttgtcacccccccgacgccatgtcgcctggagaag #### Ctsf_ID679_7 --> 2 - 0 Original Alignment agGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTG------AAGAACCAG taggatggtgccctgatgcccattctggagctgtctctcttttccttcagagGAAGAAATTCATACCATTGGCCTGATCCCTCTCTTACAGAAGCAATCTGGCAGGAAGATGAGTTCAGCGAAATCCATAACTGACCTTGCTCCACCTGAGTGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGGTGAAGAATGAAgtaagtgtaatttgaaattgggagggggttcaaggcctattagagctaac Alignment from CESAR agGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAA------GTGAAGAACCAG taggatggtgccctgatgcccattctggagctgtctctcttttccttcagagGAAGAAATTCATACCATTGGCCTGATCCCTCTCTTACAGAAGCAATCTGGCAGGAAGATGAGTTCAGCGAAATCCATAACTGACCTTGCTCCACCTGAGTGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGGTGAAGAATGAAgtaagtgtaatttgaaattgggagggggttcaaggcctattagagctaac Alignment from Spaln_aa2Genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAG taggatggtgccctgatgcccattctggagctgtctctcttttccttcagAGGAAGAAATTCATACCATTGGCCTGATCCCTCTCTTACAGAAGCAATCTGGCAGGAAGATGAGTTCAGCGAAATCCATAACTGACCTTGCTCCACCTGAGTGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGgtgaagaatgaagtaagtgtaatttgaaattgggagggggttcaaggcctattagagctaac Alignment from Spaln_nt2Genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAG taggatggtgccctgatgcccattctggagctgtctctcttttccttcagAGGAAGAAATTCATACCATTGGCCTGATCCCTCTCTTACAGAAGCAATCTGGCAGGAAGATGAGTTCAGCGAAATCCATAACTGACCTTGCTCCACCTGAGTGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGgtgaagaatgaagtaagtgtaatttgaaattgggagggggttcaaggcctattagagctaac Alignment from Pairagon AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAA------GTGAAGAA------------------------------------------------------ taggatggtgccctgatgcccattctggagctgtctctcttttccttcagAGGAAGAAATTCATACCATTGGCCTGATCCCTCTCTTACAGAAGCAATCTGGCAGGAAGATGAGTTCAGCGAAATCCATAACTGACCTTGCTCCACCTGAGTGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGGTGAAGAATGAAGTAAGTGTAATTTGAAATTGGGAGGGGGTTCAAGGCCTATTAGAGCTAAC Alignment from Exonerate_protein2genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAG taggatggtgccctgatgcccattctggagctgtctctcttttccttcagAGGAAGAAATTCATACCATTGGCCTGATCCCTCTCTTACAGAAGCAATCTGGCAGGAAGATGAGTTCAGCGAAATCCATAACTGACCTTGCTCCACCTGAGTGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGgtgaagaatgaagtaagtgtaatttgaaattgggagggggttcaaggcctattagagctaac Alignment from Exonerate_coding2genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAG taggatggtgccctgatgcccattctggagctgtctctcttttccttcagAGGAAGAAATTCATACCATTGGCCTGATCCCTCTCTTACAGAAGCAATCTGGCAGGAAGATGAGTTCAGCGAAATCCATAACTGACCTTGCTCCACCTGAGTGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGgtgaagaatgaagtaagtgtaatttgaaattgggagggggttcaaggcctattagagctaac Alignment from GeneWise AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTG------AAGAACCAG taggatggtgccctgatgcccattctggagctgtctctcttttccttcagAGGAAGAAATTCATACCATTGGCCTGATCCCTCTCTTACAGAAGCAATCTGGCAGGAAGATGAGTTCAGCGAAATCCATAACTGACCTTGCTCCACCTGAGTGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGGTGAAGAATGAAgtaagtgtaatttgaaattgggagggggttcaaggcctattagagctaac #### Ctsf_ID680_8 --> 0 - 1 Original Alignment GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGg cctcagagaaccccattagggcactctgcttgaacctcttttcctttcagAGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGG---TTGATCCGAGGAACTCTTCTTTCA---TCAGAACAGggtaagcatatgatccactctgaatatatcagacaaactcctccatagggt Alignment from CESAR GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGg cctcagagaaccccattagggcactctgcttgaacctcttttcctttcagAGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGG---TTGATCCGAGGAACTCTTCTTTCA---TCAGAACAGggtaagcatatgatccactctgaatatatcagacaaactcctccatagggt Alignment from Spaln_aa2Genome AACCAGGGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cctcagagaaccccattagggcactctgcttgaacctcttttcctttcagAGC---AGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGGTTGATC---CGAGGAACTCTTCTTTCA---TCAGAACAGGgtaagcatatgatccactctgaatatatcagacaaactcctccatagggt Alignment from Spaln_nt2Genome AACCAGGGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cctcagagaaccccattagggcactctgcttgaacctcttttcctttcagAGC---AGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGGT---TGATCCGAGGAACTCTTCTTTC---ATCAGAACAGGgtaagcatatgatccactctgaatatatcagacaaactcctccatagggt Alignment from Pairagon GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cctcagagaaccccattagggcactctgcttgaacctcttttcctttcagAGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGGT---TGATCCGAGGAACTCTTCTTTC---ATCAGAACAGGgtaagcatatgatccactctgaatatatcagacaaactcctccatagggt Alignment from Exonerate_protein2genome AACCAGGGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cctcagagaaccccattagggcactctgcttgaacctcttttcctttcagAGC---AGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGGTTGATC---CGAGGAACTCTTCTTTCA---TCAGAACAGGgtaagcatatgatccactctgaatatatcagacaaactcctccatagggt Alignment from Exonerate_coding2genome AACCAGGGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cctcagagaaccccattagggcactctgcttgaacctcttttcctttcagAGC---AGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGGTTGATC---CGAGGAACTCTTCTTTCA---TCAGAACAGGgtaagcatatgatccactctgaatatatcagacaaactcctccatagggt Alignment from GeneWise ---GGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cctcagagaaccccattagggcactctgcttgaacctcttttcctttcagAGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGGTTGATC---CGAGGAACTCTTCTTTCA---TCAGAACAGGgtaagcatatgatccactctgaatatatcagacaaactcctccatagggt #### Ctsw_ID1022_4 --> 2 - 0 Original Alignment agGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accacacttttgccaccctgctgctaccccttagaccctttccttcacagagGAGGAGTTTGGGCAATTATATGGGAGA---AGATCCCCAGAACGGACCCCGAATATGACCAAAAGGGTGGAGTCAAACACATGGGGGGAGTCTGTACCTCGAACCTGTGATTGGTGTAAAGCAAAAAACATTATCTCATCAATTGAGAATCAGgtaagtgccttagcttggtttccatttatctaacccaaggacataatctg Alignment from CESAR agGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accacacttttgccaccctgctgctaccccttagaccctttccttcacagagGAGGAGTTTGGGCAATTATATGGGAGA---AGATCCCCAGAACGGACCCCGAATATGACCAAAAGGGTGGAGTCAAACACATGGGGGGAGTCTGTACCTCGAACCTGTGATTGGTGTAAAGCAAAAAACATTATCTCATCAATTGAGAATCAGgtaagtgccttagcttggtttccatttatctaacccaaggacaacctctt Alignment from Spaln_aa2Genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAGGGAAGCTGC-------- accacacttttgccaccctgctgctaccccttagaccctttccttcacagAGGAGGAGTTTGGGCAATTATATGGGAGA---AGATCCCCAGAACGGACCCCGAATATGACCAAAAGGGTGGAGTCAAACACATGGGGGGAGTCTGTACCTCGAACCTGTGATTGGTGTAAAGCAAAAAACATTATCTCATCAATTGAGAATCAGGTAAGTGCCTTAGCTTGgtttccatttatctaacccaaggacataatctg Alignment from Spaln_nt2Genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accacacttttgccaccctgctgctaccccttagaccctttccttcacagAGGAGGAGTTTGGGCAATTATATGGG-AGAAGA--TCCCCAGAACGGACCCCGAATATGACCAAAAGGGTGGAGTCAAACACATGGGGGGAGTCTGTACCTCGAACCTGTGATTGGTGTAAAGCAAAAAACATTATCTCATCAATTGAGAATCAGgtaagtgccttagcttggtttccatttatctaacccaaggacataatctg Alignment from Pairagon AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accacacttttgccaccctgctgctaccccttagaccctttccttcacagAGGAGGAGTTTGGGCAATTATATGGG-AGAAGA--TCCCCAGAACGGACCCCGAATATGACCAAAAGGGTGGAGTCAAACACATGGGGGGAGTCTGTACCTCGAACCTGTGATTGGTGTAAAGCAAAAAACATTATCTCATCAATTGAGAATCAGgtaagtgccttagcttggtttccatttatctaacccaaggacataatctg Alignment from Exonerate_protein2genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accacacttttgccaccctgctgctaccccttagaccctttccttcacagAGGAGGAGTTTGGGCAATTATATGGGAGA---AGATCCCCAGAACGGACCCCGAATATGACCAAAAGGGTGGAGTCAAACACATGGGGGGAGTCTGTACCTCGAACCTGTGATTGGTGTAAAGCAAAAAACATTATCTCATCAATTGAGAATCAGgtaagtgccttagcttggtttccatttatctaacccaaggacataatctg Alignment from Exonerate_coding2genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accacacttttgccaccctgctgctaccccttagaccctttccttcacagAGGAGGAGTTTGGGCAATTATATGGGAGA---AGATCCCCAGAACGGACCCCGAATATGACCAAAAGGGTGGAGTCAAACACATGGGGGGAGTCTGTACCTCGAACCTGTGATTGGTGTAAAGCAAAAAACATTATCTCATCAATTGAGAATCAGgtaagtgccttagcttggtttccatttatctaacccaaggacataatctg Alignment from GeneWise AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAGGGAAGC---------TG accacacttttgccaccctgctgctaccccttagaccctttccttcacagAGGAGGAGTTTGGGCAATTATATGGGAGA---AGATCCCCAGAACGGACCCCGAATATGACCAAAAGGGTGGAGTCAAACACATGGGGGGAGTCTGTACCTCGAACCTGTGATTGGTGTAAAGCAAAAAACATTATCTCATCAATTGAGAATCAGGTAAGTGCCTTAGCTTGgtttccatttatctaacccaaggacataatctg #### Cutc_ID8811_6 --> 2 - 0 Original Alignment ccTTTGATATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTCCTAACCTTAGGATTTGAACGCGTCCTGACCAGTGGATGCGACAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACTCATAGACCAG ttaaatttcctgttctgtggtcgtcaaatgctccttttttgttttcacagctTTTGATATGGTCCAGGATCCAATGGCAGCTCTGGGGACCCTCCTCACCCTTGGATTTGAACGTGTTCTGACCAGTGGATGTGACAGCTCAGCACTGGAAGGACTGCCCTTAATAAAGCAACTGATAGACCAGgtaagttgcccatgcatctatttaggctaattatgggtatagtctaattg Alignment from CESAR ccTTTGATATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTCCTAACCTTAGGATTTGAACGCGTCCTGACCAGTGGATGCGACAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACTCATAGACCAG ttaaatttcctgttctgtggtcgtcaaatgctccttttttgttttcacagctTTTGATATGGTCCAGGATCCAATGGCAGCTCTGGGGACCCTCCTCACCCTTGGATTTGAACGTGTTCTGACCAGTGGATGTGACAGCTCAGCACTGGAAGGACTGCCCTTAATAAAGCAACTGATAGACCAGgtaagttgcccatgcatctatttaggctaattatgggtatagtctaattg Alignment from Spaln_aa2Genome CCTTTGATATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTCCTAACCTTAGGATTTGAACGCGTCCTGACCAGTGGATGCGACAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACTCATAGACCAG ttaaatttcctgttctgtggtcgtcaaatgctccttttttgttttcacagCTTTTGATATGGTCCAGGATCCAATGGCAGCTCTGGGGACCCTCCTCACCCTTGGATTTGAACGTGTTCTGACCAGTGGATGTGACAGCTCAGCACTGGAAGGACTGCCCTTAATAAAGCAACTGATAGACCAGgtaagttgcccatgcatctatttaggctaattatgggtatagtctaattg Alignment from Spaln_nt2Genome CCTTTGATATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTCCTAACCTTAGGATTTGAACGCGTCCTGACCAGTGGATGCGACAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACTCATAGACCAG ttaaatttcctgttctgtggtcgtcaaatgctccttttttgttttcacagCTTTTGATATGGTCCAGGATCCAATGGCAGCTCTGGGGACCCTCCTCACCCTTGGATTTGAACGTGTTCTGACCAGTGGATGTGACAGCTCAGCACTGGAAGGACTGCCCTTAATAAAGCAACTGATAGACCAGgtaagttgcccatgcatctatttaggctaattatgggtatagtctaattg Alignment from Pairagon CCTTTGATATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTCCTAACCTTAGGATTTGAACGCGTCCTGACCAGTGGATGCGACAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACTCATAGACCAG ttaaatttcctgttctgtggtcgtcaaatgctccttttttgttttcacagCTTTTGATATGGTCCAGGATCCAATGGCAGCTCTGGGGACCCTCCTCACCCTTGGATTTGAACGTGTTCTGACCAGTGGATGTGACAGCTCAGCACTGGAAGGACTGCCCTTAATAAAGCAACTGATAGACCAGgtaagttgcccatgcatctatttaggctaattatgggtatagtctaattg Alignment from Exonerate_protein2genome CCTTTGATATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTCCTAACCTTAGGATTTGAACGCGTCCTGACCAGTGGATGCGACAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACTCATAGACCAGGCAAAAGGCAGGATTGTGGTAATGCC ttaaatttcctgttctgtggtcgtcaaatgctccttttttgttttcacagCTTTTGATATGGTCCAGGATCCAATGGCAGCTCTGGGGACCCTCCTCACCCTTGGATTTGAACGTGTTCTGACCAGTGGATGTGACAGCTCAGCACTGGAAGGACTGCCCTTAATAAAGCAACTGATAGACCAGGTAAGTTGCCCATGCATCTATTTAGGctaattatgggtatagtctaattg Alignment from Exonerate_coding2genome GGTCACTTTCCACAGAGCCTTTGATATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTCCTAACCTTAGGATTTGAACGCGTCCTGACCAGTGGATGCGACAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACTCATAGACCAGGCAAAAGGCAGGATTGTGGTAATGCC ttaaatttcctgttctgtggtcgtcaaatgctcCTTTTTTGTTTTCACAGCTTTTGATATGGTCCAGGATCCAATGGCAGCTCTGGGGACCCTCCTCACCCTTGGATTTGAACGTGTTCTGACCAGTGGATGTGACAGCTCAGCACTGGAAGGACTGCCCTTAATAAAGCAACTGATAGACCAGGTAAGTTGCCCATGCATCTATTTAGGctaattatgggtatagtctaattg Alignment from GeneWise CCTTTGATATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTCCTAACCTTAGGATTTGAACGCGTCCTGACCAGTGGATGCGACAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACTCATAGACCAGGCAA ttaaatttcctgttctgtggtcgtcaaatgctccttttttgttttcacagCTTTTGATATGGTCCAGGATCCAATGGCAGCTCTGGGGACCCTCCTCACCCTTGGATTTGAACGTGTTCTGACCAGTGGATGTGACAGCTCAGCACTGGAAGGACTGCCCTTAATAAAGCAACTGATAGACCAGGTAAgttgcccatgcatctatttaggctaattatgggtatagtctaattg #### Cutc_ID8812_7 --> 0 - 1 Original Alignment GCAAAAGGCAGGATTGTGGTAATGCCAg tactgacttaagtttaccaactagcatggtaatgttcttgtctcctgcagGCAAAAGGG---------------ACAggtactgcctttaatataacaaatctgagttttacagggtatatatttatg Alignment from CESAR GCAAAAGGCAGGATTGTGGTAATGCCAg tactgacttaagtttaccaactagcatggtaatgttcttgtctcctgcagGCAAAAGGG---------------ACAggtactgcctttaatataacaaatctgagttttacagggtatatatttatg Alignment from Spaln_aa2Genome tactgacttaagtttaccaactagcatggtaatgttcttgtctcctgcaggcaaaagggacaggtactgcctttaatataacaaatctgagttttacagggtatatatttatg Alignment from Spaln_nt2Genome GCAAAAGGCAGGA tactgacttaagtttaccaactagcatggtaatgttcttgtctcctgcagGCAAAAGGGACAGgtactgcctttaatataacaaatctgagttttacagggtatatatttatg Alignment from Pairagon GCAAAAGGCAGGATTGTGGTAATGCCAG tactgacttaagtttaccaactagcatggtaatgttcttgtctcctgcagGCAAAAGGGA---------------CAGgtactgcctttaatataacaaatctgagttttacagggtatatatttatg Alignment from Exonerate_protein2genome tactgacttaagtttaccaactagcatggtaatgttcttgtctcctgcaggcaaaagggacaggtactgcctttaatataacaaatctgagttttacagggtatatatttatg Alignment from Exonerate_coding2genome tactgacttaagtttaccaactagcatggtaatgttcttgtctcctgcaggcaaaagggacaggtactgcctttaatataacaaatctgagttttacagggtatatatttatg Alignment from GeneWise tactgacttaagtttaccaactagcatggtaatgttcttgtctcctgcaggcaaaagggacaggtactgcctttaatataacaaatctgagttttacagggtatatatttatg #### Cwf19l1_ID8931_13 --> 0 - 2 Original Alignment ATTGCACAGCCAGGAGCAGCATATTTTTATGTTGAACTCGACACAGGAGAAAAGCTTTTCCACAGAATTAAAAAGAATTTTCCTTTGCAATTTGGAag gtattacagtcacataaaatattggattggtgacttaattctgctttgagATTGCACAGCCAGGAACAGCATATTTTTATGTTGAGCTTGACACAGGAGAAAAGCTCTTCCACAGAATTCAAAAGAATTTTCCATCGCAACTTGGAaggtaagtattgccccactttatctaacagtgatgttttccagtgattctat Alignment from CESAR ATTGCACAGCCAGGAGCAGCATATTTTTATGTTGAACTCGACACAGGAGAAAAGCTTTTCCACAGAATTAAAAAGAATTTTCCTTTGCAATTTGGAag gtattacagtcacataaaatattggattggtgacttaattctgctttgagATTGCACAGCCAGGAACAGCATATTTTTATGTTGAGCTTGACACAGGAGAAAAGCTCTTCCACAGAATTCAAAAGAATTTTCCATCGCAACTTGGAaggtaagtattgccccactttatctaacagtgatgttttccagtgattctat Alignment from Spaln_aa2Genome ATTGCACAGCCAGGAGCAGCATATTTTTATGTTGAACTCGACACAGGAGAAAAGCTTTTCCACAGAATTAAAAAGAATTTTCCTTTGCAATTTGGAAG gtattacagtcacataaaatattggattggtgacttaattctgctttgagATTGCACAGCCAGGAACAGCATATTTTTATGTTGAGCTTGACACAGGAGAAAAGCTCTTCCACAGAATTCAAAAGAATTTTCCATCGCAACTTGGAAGgtaagtattgccccactttatctaacagtgatgttttccagtgattctat Alignment from Spaln_nt2Genome ATTGCACAGCCAGGAGCAGCATATTTTTATGTTGAACTCGACACAGGAGAAAAGCTTTTCCACAGAATTAAAAAGAATTTTCCTTTGCAATTTGGAAG gtattacagtcacataaaatattggattggtgacttaattctgctttgagATTGCACAGCCAGGAACAGCATATTTTTATGTTGAGCTTGACACAGGAGAAAAGCTCTTCCACAGAATTCAAAAGAATTTTCCATCGCAACTTGGAAGgtaagtattgccccactttatctaacagtgatgttttccagtgattctat Alignment from Pairagon ATTGCACAGCCAGGAGCAGCATATTTTTATGTTGAACTCGACACAGGAGAAAAGCTTTTCCACAGAATTAAAAAGAATTTTCCTTTGCAATTTGGAAG gtattacagtcacataaaatattggattggtgacttaattctgctttgagATTGCACAGCCAGGAACAGCATATTTTTATGTTGAGCTTGACACAGGAGAAAAGCTCTTCCACAGAATTCAAAAGAATTTTCCATCGCAACTTGGAAGgtaagtattgccccactttatctaacagtgatgttttccagtgattctat Alignment from Exonerate_protein2genome ATTGCACAGCCAGGAGCAGCATATTTTTATGTTGAACTCGACACAGGAGAAAAGCTTTTCCACAGAATTAAAAAGAATTTTCCTTTGCAATTTGGAAG gtattacagtcacataaaatattggattggtgacttaattctgctttgagATTGCACAGCCAGGAACAGCATATTTTTATGTTGAGCTTGACACAGGAGAAAAGCTCTTCCACAGAATTCAAAAGAATTTTCCATCGCAACTTGGAAGgtaagtattgccccactttatctaacagtgatgttttccagtgattctat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATTGCACAGCCAGGAGCAGCATATTTTTATGTTGAACTCGACACAGGAGAAAAGCTTTTCCACAGAATTAAAAAGAATTTTCCTTTGCAATTTGGAAG gtattacagtcacataaaatattggattggtgacttaattctgctttgagATTGCACAGCCAGGAACAGCATATTTTTATGTTGAGCTTGACACAGGAGAAAAGCTCTTCCACAGAATTCAAAAGAATTTTCCATCGCAACTTGGAAGgtaagtattgccccactttatctaacagtgatgttttccagtgattctat #### Cwf19l1_ID8934_10 --> 2 - 0 Original Alignment ctCAGCCTCCAGGCCCTTGTTGGTTTTGCCTCGCCAGCCCTGAAGTGGAAAAGCACCTGGTGGTCAACATTGGCACACAT taggtgaggcataagaactcaacaatgctgcttgtgttcccatcctacagcaCAGCCTCCAGGTCCTTGTTGGTTTTGTCTTGCCAGCCCCGAGGTGGAAAAGCACCTGGTTGTCAACATTGGCACACATgtgagaggcttcctttaattgggacatcaaagaatataaccatggcatgg Alignment from CESAR ctCAGCCTCCAGGCCCTTGTTGGTTTTGCCTCGCCAGCCCTGAAGTGGAAAAGCACCTGGTGGTCAACATTGGCACACAT taggtgaggcataagaactcaacaatgctgcttgtgttcccatcctacagcaCAGCCTCCAGGTCCTTGTTGGTTTTGTCTTGCCAGCCCCGAGGTGGAAAAGCACCTGGTTGTCAACATTGGCACACATgtgagaggcttcctttaattgggacatcaaagaatataaccatggcatgg Alignment from Spaln_aa2Genome CTCAGCCTCCAGGCCCTTGTTGGTTTTGCCTCGCCAGCCCTGAAGTGGAAAAGCACCTGGTGGTCAACATTGGCACACAT taggtgaggcataagaactcaacaatgctgcttgtgttcccatcctacagCACAGCCTCCAGGTCCTTGTTGGTTTTGTCTTGCCAGCCCCGAGGTGGAAAAGCACCTGGTTGTCAACATTGGCACACATgtgagaggcttcctttaattgggacatcaaagaatataaccatggcatgg Alignment from Spaln_nt2Genome CTCAGCCTCCAGGCCCTTGTTGGTTTTGCCTCGCCAGCCCTGAAGTGGAAAAGCACCTGGTGGTCAACATTGGCACACAT taggtgaggcataagaactcaacaatgctgcttgtgttcccatcctacagCACAGCCTCCAGGTCCTTGTTGGTTTTGTCTTGCCAGCCCCGAGGTGGAAAAGCACCTGGTTGTCAACATTGGCACACATgtgagaggcttcctttaattgggacatcaaagaatataaccatggcatgg Alignment from Pairagon CTCAGCCTCCAGGCCCTTGTTGGTTTTGCCTCGCCAGCCCTGAAGTGGAAAAGCACCTGGTGGTCAACATTGGCACACAT taggtgaggcataagaactcaacaatgctgcttgtgttcccatcctacagCACAGCCTCCAGGTCCTTGTTGGTTTTGTCTTGCCAGCCCCGAGGTGGAAAAGCACCTGGTTGTCAACATTGGCACACATgtgagaggcttcctttaattgggacatcaaagaatataaccatggcatgg Alignment from Exonerate_protein2genome CTCAGCCTCCAGGCCCTTGTTGGTTTTGCCTCGCCAGCCCTGAAGTGGAAAAGCACCTGGTGGTCAACATTGGCACACAT taggtgaggcataagaactcaacaatgctgcttgtgttcccatcctacagCACAGCCTCCAGGTCCTTGTTGGTTTTGTCTTGCCAGCCCCGAGGTGGAAAAGCACCTGGTTGTCAACATTGGCACACATgtgagaggcttcctttaattgggacatcaaagaatataaccatggcatgg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTCAGCCTCCAGGCCCTTGTTGGTTTTGCCTCGCCAGCCCTGAAGTGGAAAAGCACCTGGTGGTCAACATTGGCACACAT taggtgaggcataagaactcaacaatgctgcttgtgttcccatcctacagCACAGCCTCCAGGTCCTTGTTGGTTTTGTCTTGCCAGCCCCGAGGTGGAAAAGCACCTGGTTGTCAACATTGGCACACATgtgagaggcttcctttaattgggacatcaaagaatataaccatggcatgg #### Cwf19l1_ID8937_7 --> 1 - 0 Original Alignment aAACCATGTTGTTCTACAAGAAAGCGCGCAGCATGCCACTCGCTTCATAGCGCTGGCGAATGTTGGAAATCCAGAAAAGAAGAAG gcaccgttacatctaagcttagaaattcggtgttctggtttcttctgcagaAACCAGGTTGTTGTCCAAGAAAGTGCACAGCATGCCACATATATCATAGTGATAGCTAATGTTGGAAATCCTGAAACAAAGAAGgtaaacgtcccatgcttctctagaggtctcacagagtgcatgtttgctgc Alignment from CESAR aAACCATGTTGTTCTACAAGAAAGCGCGCAGCATGCCACTCGCTTCATAGCGCTGGCGAATGTTGGAAATCCAGAAAAGAAGAAG gcaccgttacatctaagcttagaaattcggtgttctggtttcttctgcagaAACCAGGTTGTTGTCCAAGAAAGTGCACAGCATGCCACATATATCATAGTGATAGCTAATGTTGGAAATCCTGAAACAAAGAAGgtaaacgtcccatgcttctctagaggtctcacagagtgcatgtttgctgc Alignment from Spaln_aa2Genome AAACCATGTTGTTCTACAAGAAAGCGCGCAGCATGCCACTCGCTTCATAGCGCTGGCGAATGTTGGAAATCCAGAAAAGAAGAAG gcaccgttacatctaagcttagaaattcggtgttctggtttcttctgcagAAACCAGGTTGTTGTCCAAGAAAGTGCACAGCATGCCACATATATCATAGTGATAGCTAATGTTGGAAATCCTGAAACAAAGAAGgtaaacgtcccatgcttctctagaggtctcacagagtgcatgtttgctgc Alignment from Spaln_nt2Genome AAACCATGTTGTTCTACAAGAAAGCGCGCAGCATGCCACTCGCTTCATAGCGCTGGCGAATGTTGGAAATCCAGAAAAGAAGAAG gcaccgttacatctaagcttagaaattcggtgttctggtttcttctgcagAAACCAGGTTGTTGTCCAAGAAAGTGCACAGCATGCCACATATATCATAGTGATAGCTAATGTTGGAAATCCTGAAACAAAGAAGgtaaacgtcccatgcttctctagaggtctcacagagtgcatgtttgctgc Alignment from Pairagon AAACCATGTTGTTCTACAAGAAAGCGCGCAGCATGCCACTCGCTTCATAGCGCTGGCGAATGTTGGAAATCCAGAAAAGAAGAAG gcaccgttacatctaagcttagaaattcggtgttctggtttcttctgcagAAACCAGGTTGTTGTCCAAGAAAGTGCACAGCATGCCACATATATCATAGTGATAGCTAATGTTGGAAATCCTGAAACAAAGAAGgtaaacgtcccatgcttctctagaggtctcacagagtgcatgtttgctgc Alignment from Exonerate_protein2genome AAACCATGTTGTTCTACAAGAAAGCGCGCAGCATGCCACTCGCTTCATAGCGCTGGCGAATGTTGGAAATCCAGAAAAGAAGAAG gcaccgttacatctaagcttagaaattcggtgttctggtttcttctgcagAAACCAGGTTGTTGTCCAAGAAAGTGCACAGCATGCCACATATATCATAGTGATAGCTAATGTTGGAAATCCTGAAACAAAGAAGgtaaacgtcccatgcttctctagaggtctcacagagtgcatgtttgctgc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AAACCATGTTGTTCTACAAGAAAGCGCGCAGCATGCCACTCGCTTCATAGCGCTGGCGAATGTTGGAAATCCAGAAAAGAAGAAG gcaccgttacatctaagcttagaaattcggtgttctggtttcttctgcagAAACCAGGTTGTTGTCCAAGAAAGTGCACAGCATGCCACATATATCATAGTGATAGCTAATGTTGGAAATCCTGAAACAAAGAAGgtaaacgtcccatgcttctctagaggtctcacagagtgcatgtttgctgc #### Cyp26a1_ID7417_5 --> 0 - 0 Original Alignment GCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACGTCACTGATCACTTACCTAGGACTCTACCCACATGTCCTCCAGAAAGTTCGAGAAGAGATAAAGAGCAAG accccgggtaacacactggcgacttgtattctttttacaaaccttttcagGCACTAAAACAATCATCAACAGAGCTCCTCTTTGGTGGCTATAAAACTACAGCTAGTGCTGCAACATCACTTATCACTTATCTAGGACTCTACCCACATGTCCTCCAAAAAGTCCGAGAAGAGATAAAAAGCAAGgtgaggaggcttccaatacaggggctggcacccccccaccagttctatgg Alignment from CESAR GCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACGTCACTGATCACTTACCTAGGACTCTACCCACATGTCCTCCAGAAAGTTCGAGAAGAGATAAAGAGCAAG accccgggtaacacactggcgacttgtattctttttacaaaccttttcagGCACTAAAACAATCATCAACAGAGCTCCTCTTTGGTGGCTATAAAACTACAGCTAGTGCTGCAACATCACTTATCACTTATCTAGGACTCTACCCACATGTCCTCCAAAAAGTCCGAGAAGAGATAAAAAGCAAGgtgaggaggcttccaatacaggggctggcacccccccaccagttctatgg Alignment from Spaln_aa2Genome GCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACGTCACTGATCACTTACCTAGGACTCTACCCACATGTCCTCCAGAAAGTTCGAGAAGAGATAAAGAGCAAG accccgggtaacacactggcgacttgtattctttttacaaaccttttcagGCACTAAAACAATCATCAACAGAGCTCCTCTTTGGTGGCTATAAAACTACAGCTAGTGCTGCAACATCACTTATCACTTATCTAGGACTCTACCCACATGTCCTCCAAAAAGTCCGAGAAGAGATAAAAAGCAAGgtgaggaggcttccaatacaggggctggcacccccccaccagttctatgg Alignment from Spaln_nt2Genome GCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACGTCACTGATCACTTACCTAGGACTCTACCCACATGTCCTCCAGAAAGTTCGAGAAGAGATAAAGAGCAAG accccgggtaacacactggcgacttgtattctttttacaaaccttttcagGCACTAAAACAATCATCAACAGAGCTCCTCTTTGGTGGCTATAAAACTACAGCTAGTGCTGCAACATCACTTATCACTTATCTAGGACTCTACCCACATGTCCTCCAAAAAGTCCGAGAAGAGATAAAAAGCAAGgtgaggaggcttccaatacaggggctggcacccccccaccagttctatgg Alignment from Pairagon GCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACGTCACTGATCACTTACCTAGGACTCTACCCACATGTCCTCCAGAAAGTTCGAGAAGAGATAAAGAGCAAG accccgggtaacacactggcgacttgtattctttttacaaaccttttcagGCACTAAAACAATCATCAACAGAGCTCCTCTTTGGTGGCTATAAAACTACAGCTAGTGCTGCAACATCACTTATCACTTATCTAGGACTCTACCCACATGTCCTCCAAAAAGTCCGAGAAGAGATAAAAAGCAAGgtgaggaggcttccaatacaggggctggcacccccccaccagttctatgg Alignment from Exonerate_protein2genome GCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACGTCACTGATCACTTACCTAGGACTCTACCCACATGTCCTCCAGAAAGTTCGAGAAGAGATAAAGAGCAAG accccgggtaacacactggcgacttgtattctttttacaaaccttttcagGCACTAAAACAATCATCAACAGAGCTCCTCTTTGGTGGCTATAAAACTACAGCTAGTGCTGCAACATCACTTATCACTTATCTAGGACTCTACCCACATGTCCTCCAAAAAGTCCGAGAAGAGATAAAAAGCAAGgtgaggaggcttccaatacaggggctggcacccccccaccagttctatgg Alignment from Exonerate_coding2genome GCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACGTCACTGATCACTTACCTAGGACTCTACCCACATGTCCTCCAGAAAGTTCGAGAAGAGATAAAGAGCAAG accccgggtaacacactggcgacttgtattctttttacaaaccttttcagGCACTAAAACAATCATCAACAGAGCTCCTCTTTGGTGGCTATAAAACTACAGCTAGTGCTGCAACATCACTTATCACTTATCTAGGACTCTACCCACATGTCCTCCAAAAAGTCCGAGAAGAGATAAAAAGCAAGgtgaggaggcttccaatacaggggctggcacccccccaccagttctatgg Alignment from GeneWise GCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACGTCACTGATCACTTACCTAGGACTCTACCCACATGTCCTCCAGAAAGTTCGAGAAGAGATAAAGAGCAAG accccgggtaacacactggcgacttgtattctttttacaaaccttttcagGCACTAAAACAATCATCAACAGAGCTCCTCTTTGGTGGCTATAAAACTACAGCTAGTGCTGCAACATCACTTATCACTTATCTAGGACTCTACCCACATGTCCTCCAAAAAGTCCGAGAAGAGATAAAAAGCAAGgtgaggaggcttccaatacaggggctggcacccccccaccagttctatgg #### Cyp2c29_ID7761_4 --> 2 - 0 Original Alignment gcTCACCCTGTGACCCCACCTTCATCCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTCCAGAATCGTTTTGATTATAAGGATAAGGAATTTCTTATCCTCATGGATAAAATAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG tctattatagtgtcctctatacttgtcaagcatattgttttgttccataggc---TCATGTGACCCTACATTTATCCCAAGTTGTGCTCCGTGTAATGTCATTTGCTCCATCATTTTCCAGAACCGCTTCGACTATAAAGACAAGGAATTCCTTATTCTGATGGATAAAATCAATGAGAATGTGAAAATCTTGAGTTCCCCATGGTTGCAGgtaagatgatcaaaatattagaacatctcactcagatctggatggtctac Alignment from CESAR gcTCACCCTGTGACCCCACCTTCATCCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTCCAGAATCGTTTTGATTATAAGGATAAGGAATTTCTTATCCTCATGGATAAAATAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG tctattatagtgtcctctatacttgtcaagcatattgttttgttccataggcTCA---TGTGACCCTACATTTATCCCAAGTTGTGCTCCGTGTAATGTCATTTGCTCCATCATTTTCCAGAACCGCTTCGACTATAAAGACAAGGAATTCCTTATTCTGATGGATAAAATCAATGAGAATGTGAAAATCTTGAGTTCCCCATGGTTGCAGgtaagatgatcaaaatattagaacatctcactcagatctggatggtctac Alignment from Spaln_aa2Genome GCTCACCCTGTGACCCCACCTTCATCCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTCCAGAATCGTTTTGATTATAAGGATAAGGAATTTCTTATCCTCATGGATAAAATAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG tctattatagtgtcctctatacttgtcaagcatattgttttgttccatagGCTCA---TGTGACCCTACATTTATCCCAAGTTGTGCTCCGTGTAATGTCATTTGCTCCATCATTTTCCAGAACCGCTTCGACTATAAAGACAAGGAATTCCTTATTCTGATGGATAAAATCAATGAGAATGTGAAAATCTTGAGTTCCCCATGGTTGCAGgtaagatgatcaaaatattagaacatctcactcagatctggatggtctac Alignment from Spaln_nt2Genome GCTCACCCTGTGACCCCACCTTCATCCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTCCAGAATCGTTTTGATTATAAGGATAAGGAATTTCTTATCCTCATGGATAAAATAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG tctattatagtgtcctctatacttgtcaagcatattgttttgttccatagGCTCA---TGTGACCCTACATTTATCCCAAGTTGTGCTCCGTGTAATGTCATTTGCTCCATCATTTTCCAGAACCGCTTCGACTATAAAGACAAGGAATTCCTTATTCTGATGGATAAAATCAATGAGAATGTGAAAATCTTGAGTTCCCCATGGTTGCAGgtaagatgatcaaaatattagaacatctcactcagatctggatggtctac Alignment from Pairagon GCTCACCCTGTGACCCCACCTTCATCCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTCCAGAATCGTTTTGATTATAAGGATAAGGAATTTCTTATCCTCATGGATAAAATAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG tctattatagtgtcctctatacttgtcaagcatattgttttgttccatagGCTCA---TGTGACCCTACATTTATCCCAAGTTGTGCTCCGTGTAATGTCATTTGCTCCATCATTTTCCAGAACCGCTTCGACTATAAAGACAAGGAATTCCTTATTCTGATGGATAAAATCAATGAGAATGTGAAAATCTTGAGTTCCCCATGGTTGCAGgtaagatgatcaaaatattagaacatctcactcagatctggatggtctac Alignment from Exonerate_protein2genome GCTCACCCTGTGACCCCACCTTCATCCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTCCAGAATCGTTTTGATTATAAGGATAAGGAATTTCTTATCCTCATGGATAAAATAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG tctattatagtgtcctctatacttgtcaagcatattgttttgttccatagGCTCA---TGTGACCCTACATTTATCCCAAGTTGTGCTCCGTGTAATGTCATTTGCTCCATCATTTTCCAGAACCGCTTCGACTATAAAGACAAGGAATTCCTTATTCTGATGGATAAAATCAATGAGAATGTGAAAATCTTGAGTTCCCCATGGTTGCAGgtaagatgatcaaaatattagaacatctcactcagatctggatggtctac Alignment from Exonerate_coding2genome GCTCACCCTGTGACCCCACCTTCATCCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTCCAGAATCGTTTTGATTATAAGGATAAGGAATTTCTTATCCTCATGGATAAAATAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG tctattatagtgtcctctatacttgtcaagcatattgttttgttccatagGCTCA---TGTGACCCTACATTTATCCCAAGTTGTGCTCCGTGTAATGTCATTTGCTCCATCATTTTCCAGAACCGCTTCGACTATAAAGACAAGGAATTCCTTATTCTGATGGATAAAATCAATGAGAATGTGAAAATCTTGAGTTCCCCATGGTTGCAGgtaagatgatcaaaatattagaacatctcactcagatctggatggtctac Alignment from GeneWise GCTCACCCTGTGACCCCACCTTCATCCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTCCAGAATCGTTTTGATTATAAGGATAAGGAATTTCTTATCCTCATGGATAAAATAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG tctattatagtgtcctctatacttgtcaagcatattgttttgttccatagGCTCA---TGTGACCCTACATTTATCCCAAGTTGTGCTCCGTGTAATGTCATTTGCTCCATCATTTTCCAGAACCGCTTCGACTATAAAGACAAGGAATTCCTTATTCTGATGGATAAAATCAATGAGAATGTGAAAATCTTGAGTTCCCCATGGTTGCAGgtaagatgatcaaaatattagaacatctcactcagatctggatggtctac #### Cyp2c29_ID7763_6 --> 0 - 1 Original Alignment GTAAACCACATTGAACAATCAGAGTTTTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAg agtacccagtaccccccaccttattgttttcacttttctctgtttgtcagGTTAACCATATTGAACCCTCAGAGTTCTCACTTGAGAACCTAGCAAGCACAATAAATGACCTCTTTGGGGCAGGGACAAAAACCACACACACAACACTGAGATATGCCCTCCTACTCTTACTGAAATATCCAGATGTCACTggtaagaccacagacaacttgtgctgctacacacagtggaagtatgcaaca Alignment from CESAR GTAAACCACATTGAACAATCAGAGTTTTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAg agtacccagtaccccccaccttattgttttcacttttctctgtttgtcagGTTAACCATATTGAACCCTCAGAGTTCTCACTTGAGAACCTAGCAAGCACAATAAATGACCTCTTTGGGGCAGGGACAAAAACCACACACACAACACTGAGATATGCCCTCCTACTCTTACTGAAATATCCAGATGTCACTggtaagaccacagacaacttgtgctgctacacacagtggaagtatgcaaca Alignment from Spaln_aa2Genome GTAAACCACATTGAACAATCAGAGTTTTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAG agtacccagtaccccccaccttattgttttcacttttctctgtttgtcagGTTAACCATATTGAACCCTCAGAGTTCTCACTTGAGAACCTAGCAAGCACAATAAATGACCTCTTTGGGGCAGGGACAAAAACCACACACACAACACTGAGATATGCCCTCCTACTCTTACTGAAATATCCAGATGTCACTGgtaagaccacagacaacttgtgctgctacacacagtggaagtatgcaaca Alignment from Spaln_nt2Genome GTAAACCACATTGAACAATCAGAGTTTTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAG agtacccagtaccccccaccttattgttttcacttttctctgtttgtcagGTTAACCATATTGAACCCTCAGAGTTCTCACTTGAGAACCTAGCAAGCACAATAAATGACCTCTTTGGGGCAGGGACAAAAACCACACACACAACACTGAGATATGCCCTCCTACTCTTACTGAAATATCCAGATGTCACTGgtaagaccacagacaacttgtgctgctacacacagtggaagtatgcaaca Alignment from Pairagon GTAAACCACATTGAACAATCAGAGTTTTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAG agtacccagtaccccccaccttattgttttcacttttctctgtttgtcagGTTAACCATATTGAACCCTCAGAGTTCTCACTTGAGAACCTAGCAAGCACAATAAATGACCTCTTTGGGGCAGGGACAAAAACCACACACACAACACTGAGATATGCCCTCCTACTCTTACTGAAATATCCAGATGTCACTGgtaagaccacagacaacttgtgctgctacacacagtggaagtatgcaaca Alignment from Exonerate_protein2genome GTAAACCACATTGAACAATCAGAGTTTTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAG agtacccagtaccccccaccttattgttttcacttttctctgtttgtcagGTTAACCATATTGAACCCTCAGAGTTCTCACTTGAGAACCTAGCAAGCACAATAAATGACCTCTTTGGGGCAGGGACAAAAACCACACACACAACACTGAGATATGCCCTCCTACTCTTACTGAAATATCCAGATGTCACTGgtaagaccacagacaacttgtgctgctacacacagtggaagtatgcaaca Alignment from Exonerate_coding2genome GTAAACCACATTGAACAATCAGAGTTTTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAG agtacccagtaccccccaccttattgttttcacttttctctgtttgtcagGTTAACCATATTGAACCCTCAGAGTTCTCACTTGAGAACCTAGCAAGCACAATAAATGACCTCTTTGGGGCAGGGACAAAAACCACACACACAACACTGAGATATGCCCTCCTACTCTTACTGAAATATCCAGATGTCACTGgtaagaccacagacaacttgtgctgctacacacagtggaagtatgcaaca Alignment from GeneWise GTAAACCACATTGAACAATCAGAGTTTTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAG agtacccagtaccccccaccttattgttttcacttttctctgtttgtcagGTTAACCATATTGAACCCTCAGAGTTCTCACTTGAGAACCTAGCAAGCACAATAAATGACCTCTTTGGGGCAGGGACAAAAACCACACACACAACACTGAGATATGCCCTCCTACTCTTACTGAAATATCCAGATGTCACTGgtaagaccacagacaacttgtgctgctacacacagtggaagtatgcaaca #### Cyp2c37_ID7839_2 --> 0 - 1 Original Alignment TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGGGGAAGGTTCCCAGTTTTTGAT------AAAGCTACTAATGGAATGg accagtctggccgactgtcctactctatcactctctctcctcttccccagTTATCAAAAGTCCATGGCCCGGTATACAGTCTCTACTTGGGTAGGAAGCCAACTGTTGTATTACATGAGTATGAGGCAGTTAAAGAGGCTCTAGTT---TATGGACAAGAGTTTGCTGGAAGAGGAGGCTTTCCTATTTTTGATTTTGAGAAAGCTACCAATGGTATGggtaagtaatttaaagtaaatttcaactatttgttaggcatgtgagcatag Alignment from CESAR TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGGGGAAGGTTCCCAGTTTTTGAT------AAAGCTACTAATGGAATGg accagtctggccgactgtcctactctatcactctctctcctcttccccagTTATCAAAAGTCCATGGCCCGGTATACAGTCTCTACTTGGGTAGGAAGCCAACTGTTGTATTACATGAGTATGAGGCAGTTAAAGAGGCTCTAGTT---TATGGACAAGAGTTTGCTGGAAGAGGAGGCTTTCCTATTTTTGATTTTGAGAAAGCTACCAATGGTATGggtaagtaatttaaagtaaatttcaactatttgttaggcatgtgagcatag Alignment from Spaln_aa2Genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGGGGAAGGTTCCCAGTTTTTGAT------AAAGCTACTAATGGAATGG accagtctggccgactgtcctactctatcactctctctcctcttccccagTTATCAAAAGTCCATGGCCCGGTATACAGTCTCTACTTGGGTAGGAAGCCAACTGTTGTATTACATGAGTATGAGGCAGTTAAAGAGGCTCTAGTT---TATGGACAAGAGTTTGCTGGAAGAGGAGGCTTTCCTATTTTTGATTTTGAGAAAGCTACCAATGGTATGGgtaagtaatttaaagtaaatttcaactatttgttaggcatgtgagcatag Alignment from Spaln_nt2Genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGGGGAAGGTTCCCAGTTTTTGAT------AAAGCTACTAATGGAATGG accagtctggccgactgtcctactctatcactctctctcctcttccccagTTATCAAAAGTCCATGGCCCGGTATACAGTCTCTACTTGGGTAGGAAGCCAACTGTTGTATTACATGAGTATGAGGCAGTTAAAGAGGCTCTAGTT---TATGGACAAGAGTTTGCTGGAAGAGGAGGCTTTCCTATTTTTGATTTTGAGAAAGCTACCAATGGTATGGgtaagtaatttaaagtaaatttcaactatttgttaggcatgtgagcatag Alignment from Pairagon TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGGGGAAGGTTCCCAGTTTTTGAT------AAAGCTACTAATGGAATGG accagtctggccgactgtcctactctatcactctctctcctcttccccagTTATCAAAAGTCCATGGCCCGGTATACAGTCTCTACTTGGGTAGGAAGCCAACTGTTGTATTACATGAGTATGAGGCAGTTAAAGAGGCTCTAGTT---TATGGACAAGAGTTTGCTGGAAGAGGAGGCTTTCCTATTTTTGATTTTGAGAAAGCTACCAATGGTATGGgtaagtaatttaaagtaaatttcaactatttgttaggcatgtgagcatag Alignment from Exonerate_protein2genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGGGGAAGGTTCCCAGTTTTTGAT------AAAGCTACTAATGGAATGG accagtctggccgactgtcctactctatcactctctctcctcttccccagTTATCAAAAGTCCATGGCCCGGTATACAGTCTCTACTTGGGTAGGAAGCCAACTGTTGTATTACATGAGTATGAGGCAGTTAAAGAGGCTCTAGTT---TATGGACAAGAGTTTGCTGGAAGAGGAGGCTTTCCTATTTTTGATTTTGAGAAAGCTACCAATGGTATGGgtaagtaatttaaagtaaatttcaactatttgttaggcatgtgagcatag Alignment from Exonerate_coding2genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGGGGAAGGTTCCCAGTTTTTGAT------AAAGCTACTAATGGAATGG accagtctggccgactgtcctactctatcactctctctcctcttccccagTTATCAAAAGTCCATGGCCCGGTATACAGTCTCTACTTGGGTAGGAAGCCAACTGTTGTATTACATGAGTATGAGGCAGTTAAAGAGGCTCTAGTT---TATGGACAAGAGTTTGCTGGAAGAGGAGGCTTTCCTATTTTTGATTTTGAGAAAGCTACCAATGGTATGGgtaagtaatttaaagtaaatttcaactatttgttaggcatgtgagcatag Alignment from GeneWise TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGGGGAAGGTTCCCAGTTTTTGAT------AAAGCTACTAATGGAATGG accagtctggccgactgtcctactctatcactctctctcctcttccccagTTATCAAAAGTCCATGGCCCGGTATACAGTCTCTACTTGGGTAGGAAGCCAACTGTTGTATTACATGAGTATGAGGCAGTTAAAGAGGCTCTAGTT---TATGGACAAGAGTTTGCTGGAAGAGGAGGCTTTCCTATTTTTGATTTTGAGAAAGCTACCAATGGTATGGgtaagtaatttaaagtaaatttcaactatttgttaggcatgtgagcatag #### Cyp2c37_ID7841_4 --> 2 - 0 Original Alignment gcTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCTTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAACTTGATGGAAAAACTGAATGAAATAACAAAGATTCTGAGCAGCCCTTGGTTGCAG ttttctcaccatgacaattaggtcccatgcatggcttctcttgtccctaggtTCACCTTGCGATCCAACCTTCATCCTTGGTTGTGCTCCCTGCAATGTTATC---TCCAGTATTTTCAAGGATCGCTTTGATTATAAAGATCAGGATTTTCTTAATTTAATGCAGAAGCTTAATGATGTCACCAAAATTTTAAGTACCCCTTGGCTGCAGgtgcgcatcatctcccactggctcaagacttgtatcacttttgtgttgca Alignment from CESAR gcTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCTTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAACTTGATGGAAAAACTGAATGAAATAACAAAGATTCTGAGCAGCCCTTGGTTGCAG ttttctcaccatgacaattaggtcccatgcatggcttctcttgtccctaggtTCACCTTGCGATCCAACCTTCATCCTTGGTTGTGCTCCCTGCAATGTTATC---TCCAGTATTTTCAAGGATCGCTTTGATTATAAAGATCAGGATTTTCTTAATTTAATGCAGAAGCTTAATGATGTCACCAAAATTTTAAGTACCCCTTGGCTGCAGgtgcgcatcatctcccactggctcaagacttgtatcacttttgtgttgca Alignment from Spaln_aa2Genome GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCTTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAACTTGATGGAAAAACTGAATGAAATAACAAAGATTCTGAGCAGCCCTTGGTTGCAG ttttctcaccatgacaattaggtcccatgcatggcttctcttgtccctagGTTCACCTTGCGATCCAACCTTCATCCTTGGTTGTGCTCCCTGCAATGTTATCTCCAGT---ATTTTCAAGGATCGCTTTGATTATAAAGATCAGGATTTTCTTAATTTAATGCAGAAGCTTAATGATGTCACCAAAATTTTAAGTACCCCTTGGCTGCAGgtgcgcatcatctcccactggctcaagacttgtatcacttttgtgttgca Alignment from Spaln_nt2Genome GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCTTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAACTTGATGGAAAAACTGAATGAAATAACAAAGATTCTGAGCAGCCCTTGGTTGCAG ttttctcaccatgacaattaggtcccatgcatggcttctcttgtccctagGTTCACCTTGCGATCCAACCTTCATCCTTGGTTGTGCTCCCTGCAATGTTAT---CTCCAGTATTTTCAAGGATCGCTTTGATTATAAAGATCAGGATTTTCTTAATTTAATGCAGAAGCTTAATGATGTCACCAAAATTTTAAGTACCCCTTGGCTGCAGgtgcgcatcatctcccactggctcaagacttgtatcacttttgtgttgca Alignment from Pairagon GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCTTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAACTTGATGGAAAAACTGAATGAAATAACAAAGATTCTGAGCAGCCCTTGGTTGCAG ttttctcaccatgacaattaggtcccatgcatggcttctcttgtccctagGTTCACCTTGCGATCCAACCTTCATCCTTGGTTGTGCTCCCTGCAATGTTAT---CTCCAGTATTTTCAAGGATCGCTTTGATTATAAAGATCAGGATTTTCTTAATTTAATGCAGAAGCTTAATGATGTCACCAAAATTTTAAGTACCCCTTGGCTGCAGgtgcgcatcatctcccactggctcaagacttgtatcacttttgtgttgca Alignment from Exonerate_protein2genome GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCTTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAACTTGATGGAAAAACTGAATGAAATAACAAAGATTCTGAGCAGCCCTTGGTTGCAG ttttctcaccatgacaattaggtcccatgcatggcttctcttgtccctagGTTCACCTTGCGATCCAACCTTCATCCTTGGTTGTGCTCCCTGCAATGTTATCTCCAGT---ATTTTCAAGGATCGCTTTGATTATAAAGATCAGGATTTTCTTAATTTAATGCAGAAGCTTAATGATGTCACCAAAATTTTAAGTACCCCTTGGCTGCAGgtgcgcatcatctcccactggctcaagacttgtatcacttttgtgttgca Alignment from Exonerate_coding2genome GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCTTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAACTTGATGGAAAAACTGAATGAAATAACAAAGATTCTGAGCAGCCCTTGGTTGCAG ttttctcaccatgacaattaggtcccatgcatggcttctcttgtccctagGTTCACCTTGCGATCCAACCTTCATCCTTGGTTGTGCTCCCTGCAATGTTATCTCCAGT---ATTTTCAAGGATCGCTTTGATTATAAAGATCAGGATTTTCTTAATTTAATGCAGAAGCTTAATGATGTCACCAAAATTTTAAGTACCCCTTGGCTGCAGgtgcgcatcatctcccactggctcaagacttgtatcacttttgtgttgca Alignment from GeneWise GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCTTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAACTTGATGGAAAAACTGAATGAAATAACAAAGATTCTGAGCAGCCCTTGGTTGCAG ttttctcaccatgacaattaggtcccatgcatggcttctcttgtccctagGTTCACCTTGCGATCCAACCTTCATCCTTGGTTGTGCTCCCTGCAATGTTATC---TCCAGTATTTTCAAGGATCGCTTTGATTATAAAGATCAGGATTTTCTTAATTTAATGCAGAAGCTTAATGATGTCACCAAAATTTTAAGTACCCCTTGGCTGCAGgtgcgcatcatctcccactggctcaagacttgtatcacttttgtgttgca #### Cyp2c37_ID7844_7 --> 2 - 0 Original Alignment ctAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGCCCATGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTCATCCCCAACAGCCTTCCCCATGAAGTGACCAGTGACATTAAATTCAGGAACTACTTCATCCCCAAG ctatccatctcattcacgtctctctaacacctgaccagctgtccttacagcaATACTTCAGGAAGAGATTGAGCATGTGATCAGCATGCACCGAAGTCCATGCATGCAGGACAGAAGTCACACTCCTTACAGTGATGCTATGATCCCTGAGGTTCAAACCTTTATTGACCCTATCCCTAACAGTGTTCCCTATGTAGTGACAAGTGGAATTAAGTTTAGAAATTACTTCATCCCAGAGgtaagtcatgctcttatatctccttagttgagaagtctgtggatatgatg Alignment from CESAR ctAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGCCCATGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTCATCCCCAACAGCCTTCCCCATGAAGTGACCAGTGACATTAAATTCAGGAACTACTTCATCCCCAAG ctatccatctcattcacgtctctctaacacctgaccagctgtccttacagcaATACTTCAGGAAGAGATTGAGCATGTGATCAGCATGCACCGAAGTCCATGCATGCAGGACAGAAGTCACACTCCTTACAGTGATGCTATGATCCCTGAGGTTCAAACCTTTATTGACCCTATCCCTAACAGTGTTCCCTATGTAGTGACAAGTGGAATTAAGTTTAGAAATTACTTCATCCCAGAGgtaagtcatgctcttatatctccttagttgagaagtctgtggatatgatg Alignment from Spaln_aa2Genome CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGCCCATGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTCATCCCCAACAGCCTTCCCCATGAAGTGACCAGTGACATTAAATTCAGGAACTACTTCATCCCCAAG ctatccatctcattcacgtctctctaacacctgaccagctgtccttacagCAATACTTCAGGAAGAGATTGAGCATGTGATCAGCATGCACCGAAGTCCATGCATGCAGGACAGAAGTCACACTCCTTACAGTGATGCTATGATCCCTGAGGTTCAAACCTTTATTGACCCTATCCCTAACAGTGTTCCCTATGTAGTGACAAGTGGAATTAAGTTTAGAAATTACTTCATCCCAGAGgtaagtcatgctcttatatctccttagttgagaagtctgtggatatgatg Alignment from Spaln_nt2Genome CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGCCCATGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTCATCCCCAACAGCCTTCCCCATGAAGTGACCAGTGACATTAAATTCAGGAACTACTTCATCCCCAAG ctatccatctcattcacgtctctctaacacctgaccagctgtccttacagCAATACTTCAGGAAGAGATTGAGCATGTGATCAGCATGCACCGAAGTCCATGCATGCAGGACAGAAGTCACACTCCTTACAGTGATGCTATGATCCCTGAGGTTCAAACCTTTATTGACCCTATCCCTAACAGTGTTCCCTATGTAGTGACAAGTGGAATTAAGTTTAGAAATTACTTCATCCCAGAGgtaagtcatgctcttatatctccttagttgagaagtctgtggatatgatg Alignment from Pairagon CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGCCCATGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTCATCCCCAACAGCCTTCCCCATGAAGTGACCAGTGACATTAAATTCAGGAACTACTTCATCCCCAAG ctatccatctcattcacgtctctctaacacctgaccagctgtccttacagCAATACTTCAGGAAGAGATTGAGCATGTGATCAGCATGCACCGAAGTCCATGCATGCAGGACAGAAGTCACACTCCTTACAGTGATGCTATGATCCCTGAGGTTCAAACCTTTATTGACCCTATCCCTAACAGTGTTCCCTATGTAGTGACAAGTGGAATTAAGTTTAGAAATTACTTCATCCCAGAGgtaagtcatgctcttatatctccttagttgagaagtctgtggatatgatg Alignment from Exonerate_protein2genome CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGCCCATGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTCATCCCCAACAGCCTTCCCCATGAAGTGACCAGTGACATTAAATTCAGGAACTACTTCATCCCCAAG ctatccatctcattcacgtctctctaacacctgaccagctgtccttacagCAATACTTCAGGAAGAGATTGAGCATGTGATCAGCATGCACCGAAGTCCATGCATGCAGGACAGAAGTCACACTCCTTACAGTGATGCTATGATCCCTGAGGTTCAAACCTTTATTGACCCTATCCCTAACAGTGTTCCCTATGTAGTGACAAGTGGAATTAAGTTTAGAAATTACTTCATCCCAGAGgtaagtcatgctcttatatctccttagttgagaagtctgtggatatgatg Alignment from Exonerate_coding2genome CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGCCCATGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTCATCCCCAACAGCCTTCCCCATGAAGTGACCAGTGACATTAAATTCAGGAACTACTTCATCCCCAAG ctatccatctcattcacgtctctctaacacctgaccagctgtccttacagCAATACTTCAGGAAGAGATTGAGCATGTGATCAGCATGCACCGAAGTCCATGCATGCAGGACAGAAGTCACACTCCTTACAGTGATGCTATGATCCCTGAGGTTCAAACCTTTATTGACCCTATCCCTAACAGTGTTCCCTATGTAGTGACAAGTGGAATTAAGTTTAGAAATTACTTCATCCCAGAGgtaagtcatgctcttatatctccttagttgagaagtctgtggatatgatg Alignment from GeneWise CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGCCCATGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTCATCCCCAACAGCCTTCCCCATGAAGTGACCAGTGACATTAAATTCAGGAACTACTTCATCCCCAAG ctatccatctcattcacgtctctctaacacctgaccagctgtccttacagCAATACTTCAGGAAGAGATTGAGCATGTGATCAGCATGCACCGAAGTCCATGCATGCAGGACAGAAGTCACACTCCTTACAGTGATGCTATGATCCCTGAGGTTCAAACCTTTATTGACCCTATCCCTAACAGTGTTCCCTATGTAGTGACAAGTGGAATTAAGTTTAGAAATTACTTCATCCCAGAGgtaagtcatgctcttatatctccttagttgagaagtctgtggatatgatg #### Cyp2c38_ID7775_5 --> 0 - 0 Original Alignment GTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCGGGAAGTCATCACAAAGTACTAAAAAACTTCAAATATATTAGAAGTTACCTGTTGGAGAAAGTAAAAGAACACCAAGAATCACTGGATGTTACAAACCCTCGTGACTTTATCGATTATTTCCTGATTAAACAAAAACAG gacagtcccaccatagacaataagcaggttaagcttaattatttttatagGTCTGTAATAACTTCCCATTACTTGCTGACTATTCCCCAGGGAGTCATCACAAATTACTGAAGAATTTCAAGTATATTAGAGGTTACTTGTTTGAGAAAGTAAAGGAACACCAAGAATCACTTGATGTCACAAACTCCCGGGACTTTATTGATTATGTCCTAATTAAACAAAAACAAgtgagataagaatctcttaaccagttagctgagacccacccacataaact Alignment from CESAR GTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCGGGAAGTCATCACAAAGTACTAAAAAACTTCAAATATATTAGAAGTTACCTGTTGGAGAAAGTAAAAGAACACCAAGAATCACTGGATGTTACAAACCCTCGTGACTTTATCGATTATTTCCTGATTAAACAAAAACAG gacagtcccaccatagacaataagcaggttaagcttaattatttttatagGTCTGTAATAACTTCCCATTACTTGCTGACTATTCCCCAGGGAGTCATCACAAATTACTGAAGAATTTCAAGTATATTAGAGGTTACTTGTTTGAGAAAGTAAAGGAACACCAAGAATCACTTGATGTCACAAACTCCCGGGACTTTATTGATTATGTCCTAATTAAACAAAAACAAgtgagataagaatctcttaaccagttagctgagacccacccacataaact Alignment from Spaln_aa2Genome GTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCGGGAAGTCATCACAAAGTACTAAAAAACTTCAAATATATTAGAAGTTACCTGTTGGAGAAAGTAAAAGAACACCAAGAATCACTGGATGTTACAAACCCTCGTGACTTTATCGATTATTTCCTGATTAAACAAAAACAG gacagtcccaccatagacaataagcaggttaagcttaattatttttatagGTCTGTAATAACTTCCCATTACTTGCTGACTATTCCCCAGGGAGTCATCACAAATTACTGAAGAATTTCAAGTATATTAGAGGTTACTTGTTTGAGAAAGTAAAGGAACACCAAGAATCACTTGATGTCACAAACTCCCGGGACTTTATTGATTATGTCCTAATTAAACAAAAACAAgtgagataagaatctcttaaccagttagctgagacccacccacataaact Alignment from Spaln_nt2Genome GTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCGGGAAGTCATCACAAAGTACTAAAAAACTTCAAATATATTAGAAGTTACCTGTTGGAGAAAGTAAAAGAACACCAAGAATCACTGGATGTTACAAACCCTCGTGACTTTATCGATTATTTCCTGATTAAACAAAAACAG gacagtcccaccatagacaataagcaggttaagcttaattatttttatagGTCTGTAATAACTTCCCATTACTTGCTGACTATTCCCCAGGGAGTCATCACAAATTACTGAAGAATTTCAAGTATATTAGAGGTTACTTGTTTGAGAAAGTAAAGGAACACCAAGAATCACTTGATGTCACAAACTCCCGGGACTTTATTGATTATGTCCTAATTAAACAAAAACAAgtgagataagaatctcttaaccagttagctgagacccacccacataaact Alignment from Pairagon GTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCGGGAAGTCATCACAAAGTACTAAAAAACTTCAAATATATTAGAAGTTACCTGTTGGAGAAAGTAAAAGAACACCAAGAATCACTGGATGTTACAAACCCTCGTGACTTTATCGATTATTTCCTGATTAAACAAAAACAG gacagtcccaccatagacaataagcaggttaagcttaattatttttatagGTCTGTAATAACTTCCCATTACTTGCTGACTATTCCCCAGGGAGTCATCACAAATTACTGAAGAATTTCAAGTATATTAGAGGTTACTTGTTTGAGAAAGTAAAGGAACACCAAGAATCACTTGATGTCACAAACTCCCGGGACTTTATTGATTATGTCCTAATTAAACAAAAACAAgtgagataagaatctcttaaccagttagctgagacccacccacataaact Alignment from Exonerate_protein2genome GTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCGGGAAGTCATCACAAAGTACTAAAAAACTTCAAATATATTAGAAGTTACCTGTTGGAGAAAGTAAAAGAACACCAAGAATCACTGGATGTTACAAACCCTCGTGACTTTATCGATTATTTCCTGATTAAACAAAAACAG gacagtcccaccatagacaataagcaggttaagcttaattatttttatagGTCTGTAATAACTTCCCATTACTTGCTGACTATTCCCCAGGGAGTCATCACAAATTACTGAAGAATTTCAAGTATATTAGAGGTTACTTGTTTGAGAAAGTAAAGGAACACCAAGAATCACTTGATGTCACAAACTCCCGGGACTTTATTGATTATGTCCTAATTAAACAAAAACAAgtgagataagaatctcttaaccagttagctgagacccacccacataaact Alignment from Exonerate_coding2genome GTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCGGGAAGTCATCACAAAGTACTAAAAAACTTCAAATATATTAGAAGTTACCTGTTGGAGAAAGTAAAAGAACACCAAGAATCACTGGATGTTACAAACCCTCGTGACTTTATCGATTATTTCCTGATTAAACAAAAACAG gacagtcccaccatagacaataagcaggttaagcttaattatttttatagGTCTGTAATAACTTCCCATTACTTGCTGACTATTCCCCAGGGAGTCATCACAAATTACTGAAGAATTTCAAGTATATTAGAGGTTACTTGTTTGAGAAAGTAAAGGAACACCAAGAATCACTTGATGTCACAAACTCCCGGGACTTTATTGATTATGTCCTAATTAAACAAAAACAAgtgagataagaatctcttaaccagttagctgagacccacccacataaact Alignment from GeneWise GTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCGGGAAGTCATCACAAAGTACTAAAAAACTTCAAATATATTAGAAGTTACCTGTTGGAGAAAGTAAAAGAACACCAAGAATCACTGGATGTTACAAACCCTCGTGACTTTATCGATTATTTCCTGATTAAACAAAAACAG gacagtcccaccatagacaataagcaggttaagcttaattatttttatagGTCTGTAATAACTTCCCATTACTTGCTGACTATTCCCCAGGGAGTCATCACAAATTACTGAAGAATTTCAAGTATATTAGAGGTTACTTGTTTGAGAAAGTAAAGGAACACCAAGAATCACTTGATGTCACAAACTCCCGGGACTTTATTGATTATGTCCTAATTAAACAAAAACAAgtgagataagaatctcttaaccagttagctgagacccacccacataaact #### Cyp2c38_ID7777_3 --> 2 - 1 Original Alignment gcATTACTTTTAGCAATGGAAACAGTTGGAAAGAGACAAGACGTTTCACACTCATGACCCTAAGGAATTTGGGCATGGGGAAAAGGAACATTGAGGATCGTGTTCGAGAAGAAGCACAGTGTCTTGTGGAAGAACTAAGGAAAACCAAGg ttgagggaatctgagaaacactattttcctgacgctgttttgctgtgtaggcATCACTTTTAGTAATGGCAATGGTTGGAAAGACACAAGATGTTTTTCTCTGATGACCCTAAGGAATTTAGGCATGGGCAGAGGGAACATTGAAGATCATGTTCAGGAGGAAGCACAGTGTTTGGTGGAAGAGTTGAAGAAAAGTAAGggtgagtggcaatgtgtacactagcatcctttatatggaaccatcctcttc Alignment from CESAR gcATTACTTTTAGCAATGGAAACAGTTGGAAAGAGACAAGACGTTTCACACTCATGACCCTAAGGAATTTGGGCATGGGGAAAAGGAACATTGAGGATCGTGTTCGAGAAGAAGCACAGTGTCTTGTGGAAGAACTAAGGAAAACCAAGg ttgagggaatctgagaaacactattttcctgacgctgttttgctgtgtaggcATCACTTTTAGTAATGGCAATGGTTGGAAAGACACAAGATGTTTTTCTCTGATGACCCTAAGGAATTTAGGCATGGGCAGAGGGAACATTGAAGATCATGTTCAGGAGGAAGCACAGTGTTTGGTGGAAGAGTTGAAGAAAAGTAAGggtgagtggcaatgtgtacactagcatcctttatatggaaccatcctcttc Alignment from Spaln_aa2Genome GCATTACTTTTAGCAATGGAAACAGTTGGAAAGAGACAAGACGTTTCACACTCATGACCCTAAGGAATTTGGGCATGGGGAAAAGGAACATTGAGGATCGTGTTCGAGAAGAAGCACAGTGTCTTGTGGAAGAACTAAGGAAAACCAAGG ttgagggaatctgagaaacactattttcctgacgctgttttgctgtgtagGCATCACTTTTAGTAATGGCAATGGTTGGAAAGACACAAGATGTTTTTCTCTGATGACCCTAAGGAATTTAGGCATGGGCAGAGGGAACATTGAAGATCATGTTCAGGAGGAAGCACAGTGTTTGGTGGAAGAGTTGAAGAAAAGTAAGGgtgagtggcaatgtgtacactagcatcctttatatggaaccatcctcttc Alignment from Spaln_nt2Genome GCATTACTTTTAGCAATGGAAACAGTTGGAAAGAGACAAGACGTTTCACACTCATGACCCTAAGGAATTTGGGCATGGGGAAAAGGAACATTGAGGATCGTGTTCGAGAAGAAGCACAGTGTCTTGTGGAAGAACTAAGGAAAACCAAGG ttgagggaatctgagaaacactattttcctgacgctgttttgctgtgtagGCATCACTTTTAGTAATGGCAATGGTTGGAAAGACACAAGATGTTTTTCTCTGATGACCCTAAGGAATTTAGGCATGGGCAGAGGGAACATTGAAGATCATGTTCAGGAGGAAGCACAGTGTTTGGTGGAAGAGTTGAAGAAAAGTAAGGgtgagtggcaatgtgtacactagcatcctttatatggaaccatcctcttc Alignment from Pairagon GCATTACTTTTAGCAATGGAAACAGTTGGAAAGAGACAAGACGTTTCACACTCATGACCCTAAGGAATTTGGGCATGGGGAAAAGGAACATTGAGGATCGTGTTCGAGAAGAAGCACAGTGTCTTGTGGAAGAACTAAGGAAAACCAAGG ttgagggaatctgagaaacactattttcctgacgctgttttgctgtgtagGCATCACTTTTAGTAATGGCAATGGTTGGAAAGACACAAGATGTTTTTCTCTGATGACCCTAAGGAATTTAGGCATGGGCAGAGGGAACATTGAAGATCATGTTCAGGAGGAAGCACAGTGTTTGGTGGAAGAGTTGAAGAAAAGTAAGGgtgagtggcaatgtgtacactagcatcctttatatggaaccatcctcttc Alignment from Exonerate_protein2genome GCATTACTTTTAGCAATGGAAACAGTTGGAAAGAGACAAGACGTTTCACACTCATGACCCTAAGGAATTTGGGCATGGGGAAAAGGAACATTGAGGATCGTGTTCGAGAAGAAGCACAGTGTCTTGTGGAAGAACTAAGGAAAACCAAGG ttgagggaatctgagaaacactattttcctgacgctgttttgctgtgtagGCATCACTTTTAGTAATGGCAATGGTTGGAAAGACACAAGATGTTTTTCTCTGATGACCCTAAGGAATTTAGGCATGGGCAGAGGGAACATTGAAGATCATGTTCAGGAGGAAGCACAGTGTTTGGTGGAAGAGTTGAAGAAAAGTAAGGgtgagtggcaatgtgtacactagcatcctttatatggaaccatcctcttc Alignment from Exonerate_coding2genome GCATTACTTTTAGCAATGGAAACAGTTGGAAAGAGACAAGACGTTTCACACTCATGACCCTAAGGAATTTGGGCATGGGGAAAAGGAACATTGAGGATCGTGTTCGAGAAGAAGCACAGTGTCTTGTGGAAGAACTAAGGAAAACCAAGG ttgagggaatctgagaaacactattttcctgacgctgttttgctgtgtagGCATCACTTTTAGTAATGGCAATGGTTGGAAAGACACAAGATGTTTTTCTCTGATGACCCTAAGGAATTTAGGCATGGGCAGAGGGAACATTGAAGATCATGTTCAGGAGGAAGCACAGTGTTTGGTGGAAGAGTTGAAGAAAAGTAAGGgtgagtggcaatgtgtacactagcatcctttatatggaaccatcctcttc Alignment from GeneWise GCATTACTTTTAGCAATGGAAACAGTTGGAAAGAGACAAGACGTTTCACACTCATGACCCTAAGGAATTTGGGCATGGGGAAAAGGAACATTGAGGATCGTGTTCGAGAAGAAGCACAGTGTCTTGTGGAAGAACTAAGGAAAACCAAGG ttgagggaatctgagaaacactattttcctgacgctgttttgctgtgtagGCATCACTTTTAGTAATGGCAATGGTTGGAAAGACACAAGATGTTTTTCTCTGATGACCCTAAGGAATTTAGGCATGGGCAGAGGGAACATTGAAGATCATGTTCAGGAGGAAGCACAGTGTTTGGTGGAAGAGTTGAAGAAAAGTAAGGgtgagtggcaatgtgtacactagcatcctttatatggaaccatcctcttc #### Cyp2c40_ID7817_7 --> 2 - 0 Original Alignment ctAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG tctaggctgtactttttgctagcaatattgacttttgtactgtaccttagcaAAAGTCTCAGAAGAGATAGATAATGTGAATGGAAGACACCACAGTCCCTGTATGAAGGACAAGAACCATATGCCC---ACTAATGCCATGGTACACGAGGTCCAGCGATACAATGACCTTGGGCCAAATGGTGTAGTACATGAAGTTACCTGTGACACCAAGTTACGGCCCTACCTCATCCCTAAGgtacggatgctttctcttatgataaatatgatgatgaaaggaggtacttt Alignment from CESAR ctAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG tctaggctgtactttttgctagcaatattgacttttgtactgtaccttagcaAAAGTCTCAGAAGAGATAGATAATGTGAATGGAAGACACCACAGTCCCTGTATGAAGGACAAGAACCATATGCCC---ACTAATGCCATGGTACACGAGGTCCAGCGATACAATGACCTTGGGCCAAATGGTGTAGTACATGAAGTTACCTGTGACACCAAGTTACGGCCCTACCTCATCCCTAAGgtacggatgctttctcttatgataaatatgatgatgaaaggaggtacttt Alignment from Spaln_aa2Genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG tctaggctgtactttttgctagcaatattgacttttgtactgtaccttagCAAAAGTCTCAGAAGAGATAGATAATGTGAATGGAAGACACCACAGTCCCTGTATGAAGGACAAGAACCATATGCCC---ACTAATGCCATGGTACACGAGGTCCAGCGATACAATGACCTTGGGCCAAATGGTGTAGTACATGAAGTTACCTGTGACACCAAGTTACGGCCCTACCTCATCCCTAAGgtacggatgctttctcttatgataaatatgatgatgaaaggaggtacttt Alignment from Spaln_nt2Genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG tctaggctgtactttttgctagcaatattgacttttgtactgtaccttagCAAAAGTCTCAGAAGAGATAGATAATGTGAATGGAAGACACCACAGTCCCTGTATGAAGGACAAGAACCATATGCC---CACTAATGCCATGGTACACGAGGTCCAGCGATACAATGACCTTGGGCCAAATGGTGTAGTACATGAAGTTACCTGTGACACCAAGTTACGGCCCTACCTCATCCCTAAGgtacggatgctttctcttatgataaatatgatgatgaaaggaggtacttt Alignment from Pairagon CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG tctaggctgtactttttgctagcaatattgacttttgtactgtaccttagCAAAAGTCTCAGAAGAGATAGATAATGTGAATGGAAGACACCACAGTCCCTGTATGAAGGACAAGAACCATATGCC---CACTAATGCCATGGTACACGAGGTCCAGCGATACAATGACCTTGGGCCAAATGGTGTAGTACATGAAGTTACCTGTGACACCAAGTTACGGCCCTACCTCATCCCTAAGgtacggatgctttctcttatgataaatatgatgatgaaaggaggtacttt Alignment from Exonerate_protein2genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG tctaggctgtactttttgctagcaatattgacttttgtactgtaccttagCAAAAGTCTCAGAAGAGATAGATAATGTGAATGGAAGACACCACAGTCCCTGTATGAAGGACAAGAACCATATGCCC---ACTAATGCCATGGTACACGAGGTCCAGCGATACAATGACCTTGGGCCAAATGGTGTAGTACATGAAGTTACCTGTGACACCAAGTTACGGCCCTACCTCATCCCTAAGgtacggatgctttctcttatgataaatatgatgatgaaaggaggtacttt Alignment from Exonerate_coding2genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG tctaggctgtactttttgctagcaatattgacttttgtactgtaccttagCAAAAGTCTCAGAAGAGATAGATAATGTGAATGGAAGACACCACAGTCCCTGTATGAAGGACAAGAACCATATGCCC---ACTAATGCCATGGTACACGAGGTCCAGCGATACAATGACCTTGGGCCAAATGGTGTAGTACATGAAGTTACCTGTGACACCAAGTTACGGCCCTACCTCATCCCTAAGgtacggatgctttctcttatgataaatatgatgatgaaaggaggtacttt Alignment from GeneWise CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG tctaggctgtactttttgctagcaatattgacttttgtactgtaccttagCAAAAGTCTCAGAAGAGATAGATAATGTGAATGGAAGACACCACAGTCCCTGTATGAAGGACAAGAACCATATGCCC---ACTAATGCCATGGTACACGAGGTCCAGCGATACAATGACCTTGGGCCAAATGGTGTAGTACATGAAGTTACCTGTGACACCAAGTTACGGCCCTACCTCATCCCTAAGgtacggatgctttctcttatgataaatatgatgatgaaaggaggtacttt #### Cyp2c40_ID7818_6 --> 0 - 1 Original Alignment AAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAg ctattatactgcattgtgaaggtagtctacacctcaggttccctctgcagAAAAATGGCACTGAGCACATGGAGTATGCCATTGAACACCTGACAATATTAGTGACTGACCTAGTTTTTGGGGGGACAGAGACACTAAGCTCTACAATAAGATTTGCCCTTGTGCTCTTGATGAAGCACATGCACACAACAggtaagtatctattgaactgtgcctgtcataaataattcataggtagtcag Alignment from CESAR AAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAg ctattatactgcattgtgaaggtagtctacacctcaggttccctctgcagAAAAATGGCACTGAGCACATGGAGTATGCCATTGAACACCTGACAATATTAGTGACTGACCTAGTTTTTGGGGGGACAGAGACACTAAGCTCTACAATAAGATTTGCCCTTGTGCTCTTGATGAAGCACATGCACACAACAggtaagtatctattgaactgtgcctgtcataaataattcataggtagtcag Alignment from Spaln_aa2Genome AAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG ctattatactgcattgtgaaggtagtctacacctcaggttccctctgcagAAAAATGGCACTGAGCACATGGAGTATGCCATTGAACACCTGACAATATTAGTGACTGACCTAGTTTTTGGGGGGACAGAGACACTAAGCTCTACAATAAGATTTGCCCTTGTGCTCTTGATGAAGCACATGCACACAACAGgtaagtatctattgaactgtgcctgtcataaataattcataggtagtcag Alignment from Spaln_nt2Genome AAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG ctattatactgcattgtgaaggtagtctacacctcaggttccctctgcagAAAAATGGCACTGAGCACATGGAGTATGCCATTGAACACCTGACAATATTAGTGACTGACCTAGTTTTTGGGGGGACAGAGACACTAAGCTCTACAATAAGATTTGCCCTTGTGCTCTTGATGAAGCACATGCACACAACAGgtaagtatctattgaactgtgcctgtcataaataattcataggtagtcag Alignment from Pairagon AAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG ctattatactgcattgtgaaggtagtctacacctcaggttccctctgcagAAAAATGGCACTGAGCACATGGAGTATGCCATTGAACACCTGACAATATTAGTGACTGACCTAGTTTTTGGGGGGACAGAGACACTAAGCTCTACAATAAGATTTGCCCTTGTGCTCTTGATGAAGCACATGCACACAACAGgtaagtatctattgaactgtgcctgtcataaataattcataggtagtcag Alignment from Exonerate_protein2genome AAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG ctattatactgcattgtgaaggtagtctacacctcaggttccctctgcagAAAAATGGCACTGAGCACATGGAGTATGCCATTGAACACCTGACAATATTAGTGACTGACCTAGTTTTTGGGGGGACAGAGACACTAAGCTCTACAATAAGATTTGCCCTTGTGCTCTTGATGAAGCACATGCACACAACAGgtaagtatctattgaactgtgcctgtcataaataattcataggtagtcag Alignment from Exonerate_coding2genome AAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG ctattatactgcattgtgaaggtagtctacacctcaggttccctctgcagAAAAATGGCACTGAGCACATGGAGTATGCCATTGAACACCTGACAATATTAGTGACTGACCTAGTTTTTGGGGGGACAGAGACACTAAGCTCTACAATAAGATTTGCCCTTGTGCTCTTGATGAAGCACATGCACACAACAGgtaagtatctattgaactgtgcctgtcataaataattcataggtagtcag Alignment from GeneWise AAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG ctattatactgcattgtgaaggtagtctacacctcaggttccctctgcagAAAAATGGCACTGAGCACATGGAGTATGCCATTGAACACCTGACAATATTAGTGACTGACCTAGTTTTTGGGGGGACAGAGACACTAAGCTCTACAATAAGATTTGCCCTTGTGCTCTTGATGAAGCACATGCACACAACAGgtaagtatctattgaactgtgcctgtcataaataattcataggtagtcag #### Cyp2c40_ID7819_5 --> 0 - 0 Original Alignment ATTTTCAATGCAGTCCCTATTCTTATTGATTATTGTCCAGGAAGTCATAATAAACTTTTTAAAAATCATACATGGATTAAGAGCTATCTTTTGGGGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAAATCCTCGGGACTTCATTGATTACTTCCTAATTCAAAGACGTCAG tctccttgatataaggacagatatcattccctggactatcatttctacagATTTTCAATGCAGTCCCTATTCTTATTGACTATTGTCCAGGAAGTCACAACAAACTTTTTAAAACTCATACATGGGTTAAAAGCTATCTCTTAGGGAAGATAAAAGAACATGAAGAATCACTGGACATTACAAATCCCAGGGACTATATTGATTACTTCTTAGTCCAGAGACGTCAGgtgagaagtgtgggttgtcagaaccagaaaaggatctacctgcaggaaaa Alignment from CESAR ATTTTCAATGCAGTCCCTATTCTTATTGATTATTGTCCAGGAAGTCATAATAAACTTTTTAAAAATCATACATGGATTAAGAGCTATCTTTTGGGGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAAATCCTCGGGACTTCATTGATTACTTCCTAATTCAAAGACGTCAG tctccttgatataaggacagatatcattccctggactatcatttctacagATTTTCAATGCAGTCCCTATTCTTATTGACTATTGTCCAGGAAGTCACAACAAACTTTTTAAAACTCATACATGGGTTAAAAGCTATCTCTTAGGGAAGATAAAAGAACATGAAGAATCACTGGACATTACAAATCCCAGGGACTATATTGATTACTTCTTAGTCCAGAGACGTCAGgtgagaagtgtgggttgtcagaaccagaaaaggatctacctgcaggaaaa Alignment from Spaln_aa2Genome ATTTTCAATGCAGTCCCTATTCTTATTGATTATTGTCCAGGAAGTCATAATAAACTTTTTAAAAATCATACATGGATTAAGAGCTATCTTTTGGGGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAAATCCTCGGGACTTCATTGATTACTTCCTAATTCAAAGACGTCAG tctccttgatataaggacagatatcattccctggactatcatttctacagATTTTCAATGCAGTCCCTATTCTTATTGACTATTGTCCAGGAAGTCACAACAAACTTTTTAAAACTCATACATGGGTTAAAAGCTATCTCTTAGGGAAGATAAAAGAACATGAAGAATCACTGGACATTACAAATCCCAGGGACTATATTGATTACTTCTTAGTCCAGAGACGTCAGgtgagaagtgtgggttgtcagaaccagaaaaggatctacctgcaggaaaa Alignment from Spaln_nt2Genome ATTTTCAATGCAGTCCCTATTCTTATTGATTATTGTCCAGGAAGTCATAATAAACTTTTTAAAAATCATACATGGATTAAGAGCTATCTTTTGGGGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAAATCCTCGGGACTTCATTGATTACTTCCTAATTCAAAGACGTCAG tctccttgatataaggacagatatcattccctggactatcatttctacagATTTTCAATGCAGTCCCTATTCTTATTGACTATTGTCCAGGAAGTCACAACAAACTTTTTAAAACTCATACATGGGTTAAAAGCTATCTCTTAGGGAAGATAAAAGAACATGAAGAATCACTGGACATTACAAATCCCAGGGACTATATTGATTACTTCTTAGTCCAGAGACGTCAGgtgagaagtgtgggttgtcagaaccagaaaaggatctacctgcaggaaaa Alignment from Pairagon ATTTTCAATGCAGTCCCTATTCTTATTGATTATTGTCCAGGAAGTCATAATAAACTTTTTAAAAATCATACATGGATTAAGAGCTATCTTTTGGGGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAAATCCTCGGGACTTCATTGATTACTTCCTAATTCAAAGACGTCAG tctccttgatataaggacagatatcattccctggactatcatttctacagATTTTCAATGCAGTCCCTATTCTTATTGACTATTGTCCAGGAAGTCACAACAAACTTTTTAAAACTCATACATGGGTTAAAAGCTATCTCTTAGGGAAGATAAAAGAACATGAAGAATCACTGGACATTACAAATCCCAGGGACTATATTGATTACTTCTTAGTCCAGAGACGTCAGgtgagaagtgtgggttgtcagaaccagaaaaggatctacctgcaggaaaa Alignment from Exonerate_protein2genome ATTTTCAATGCAGTCCCTATTCTTATTGATTATTGTCCAGGAAGTCATAATAAACTTTTTAAAAATCATACATGGATTAAGAGCTATCTTTTGGGGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAAATCCTCGGGACTTCATTGATTACTTCCTAATTCAAAGACGTCAG tctccttgatataaggacagatatcattccctggactatcatttctacagATTTTCAATGCAGTCCCTATTCTTATTGACTATTGTCCAGGAAGTCACAACAAACTTTTTAAAACTCATACATGGGTTAAAAGCTATCTCTTAGGGAAGATAAAAGAACATGAAGAATCACTGGACATTACAAATCCCAGGGACTATATTGATTACTTCTTAGTCCAGAGACGTCAGgtgagaagtgtgggttgtcagaaccagaaaaggatctacctgcaggaaaa Alignment from Exonerate_coding2genome ATTTTCAATGCAGTCCCTATTCTTATTGATTATTGTCCAGGAAGTCATAATAAACTTTTTAAAAATCATACATGGATTAAGAGCTATCTTTTGGGGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAAATCCTCGGGACTTCATTGATTACTTCCTAATTCAAAGACGTCAG tctccttgatataaggacagatatcattccctggactatcatttctacagATTTTCAATGCAGTCCCTATTCTTATTGACTATTGTCCAGGAAGTCACAACAAACTTTTTAAAACTCATACATGGGTTAAAAGCTATCTCTTAGGGAAGATAAAAGAACATGAAGAATCACTGGACATTACAAATCCCAGGGACTATATTGATTACTTCTTAGTCCAGAGACGTCAGgtgagaagtgtgggttgtcagaaccagaaaaggatctacctgcaggaaaa Alignment from GeneWise ATTTTCAATGCAGTCCCTATTCTTATTGATTATTGTCCAGGAAGTCATAATAAACTTTTTAAAAATCATACATGGATTAAGAGCTATCTTTTGGGGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAAATCCTCGGGACTTCATTGATTACTTCCTAATTCAAAGACGTCAG tctccttgatataaggacagatatcattccctggactatcatttctacagATTTTCAATGCAGTCCCTATTCTTATTGACTATTGTCCAGGAAGTCACAACAAACTTTTTAAAACTCATACATGGGTTAAAAGCTATCTCTTAGGGAAGATAAAAGAACATGAAGAATCACTGGACATTACAAATCCCAGGGACTATATTGATTACTTCTTAGTCCAGAGACGTCAGgtgagaagtgtgggttgtcagaaccagaaaaggatctacctgcaggaaaa #### Cyp2c44_ID8886_5 --> 0 - 0 Original Alignment ATGTACAACCTATGGCCGACGATCATGAAGTACATACCTGGAAAGCATAGAGAATTCTCAAAAAGGCTTGGTGGTGTTAAAAACTTCATCCTAGAAAAAGTGAAGGAGCACCAGGAGTCCCTGGACCCCGCCAACCCTCGGGATTACATCGACTGTTTCCTCAGCAAGATCGAGGAG cacagggagattgttgatacatcctgtcagttaattttcttttttcccagATGTACAACCTATGGCGAATGATTATGAAGTATATACCAGGAAAGCATAGAGAATTCTCAAAACAGCTGGGTGGTGTTAAAAATTTCATCCTAGAAAAAGTGACGGAGCACCAGGAACTGCTGGACCCTGCTAATCCTCGGGACTACATTGATTGTTTCCTTAGCAAGATTGAGGAGgtgagtgagttacaatccttgtaatcgttgcataaacccatcccctacaa Alignment from CESAR ATGTACAACCTATGGCCGACGATCATGAAGTACATACCTGGAAAGCATAGAGAATTCTCAAAAAGGCTTGGTGGTGTTAAAAACTTCATCCTAGAAAAAGTGAAGGAGCACCAGGAGTCCCTGGACCCCGCCAACCCTCGGGATTACATCGACTGTTTCCTCAGCAAGATCGAGGAG cacagggagattgttgatacatcctgtcagttaattttcttttttcccagATGTACAACCTATGGCGAATGATTATGAAGTATATACCAGGAAAGCATAGAGAATTCTCAAAACAGCTGGGTGGTGTTAAAAATTTCATCCTAGAAAAAGTGACGGAGCACCAGGAACTGCTGGACCCTGCTAATCCTCGGGACTACATTGATTGTTTCCTTAGCAAGATTGAGGAGgtgagtgagttacaatccttgtaatcgttgcataaacccatcccctacaa Alignment from Spaln_aa2Genome ATGTACAACCTATGGCCGACGATCATGAAGTACATACCTGGAAAGCATAGAGAATTCTCAAAAAGGCTTGGTGGTGTTAAAAACTTCATCCTAGAAAAAGTGAAGGAGCACCAGGAGTCCCTGGACCCCGCCAACCCTCGGGATTACATCGACTGTTTCCTCAGCAAGATCGAGGAG cacagggagattgttgatacatcctgtcagttaattttcttttttcccagATGTACAACCTATGGCGAATGATTATGAAGTATATACCAGGAAAGCATAGAGAATTCTCAAAACAGCTGGGTGGTGTTAAAAATTTCATCCTAGAAAAAGTGACGGAGCACCAGGAACTGCTGGACCCTGCTAATCCTCGGGACTACATTGATTGTTTCCTTAGCAAGATTGAGGAGgtgagtgagttacaatccttgtaatcgttgcataaacccatcccctacaa Alignment from Spaln_nt2Genome ATGTACAACCTATGGCCGACGATCATGAAGTACATACCTGGAAAGCATAGAGAATTCTCAAAAAGGCTTGGTGGTGTTAAAAACTTCATCCTAGAAAAAGTGAAGGAGCACCAGGAGTCCCTGGACCCCGCCAACCCTCGGGATTACATCGACTGTTTCCTCAGCAAGATCGAGGAG cacagggagattgttgatacatcctgtcagttaattttcttttttcccagATGTACAACCTATGGCGAATGATTATGAAGTATATACCAGGAAAGCATAGAGAATTCTCAAAACAGCTGGGTGGTGTTAAAAATTTCATCCTAGAAAAAGTGACGGAGCACCAGGAACTGCTGGACCCTGCTAATCCTCGGGACTACATTGATTGTTTCCTTAGCAAGATTGAGGAGgtgagtgagttacaatccttgtaatcgttgcataaacccatcccctacaa Alignment from Pairagon ATGTACAACCTATGGCCGACGATCATGAAGTACATACCTGGAAAGCATAGAGAATTCTCAAAAAGGCTTGGTGGTGTTAAAAACTTCATCCTAGAAAAAGTGAAGGAGCACCAGGAGTCCCTGGACCCCGCCAACCCTCGGGATTACATCGACTGTTTCCTCAGCAAGATCGAGGAG cacagggagattgttgatacatcctgtcagttaattttcttttttcccagATGTACAACCTATGGCGAATGATTATGAAGTATATACCAGGAAAGCATAGAGAATTCTCAAAACAGCTGGGTGGTGTTAAAAATTTCATCCTAGAAAAAGTGACGGAGCACCAGGAACTGCTGGACCCTGCTAATCCTCGGGACTACATTGATTGTTTCCTTAGCAAGATTGAGGAGgtgagtgagttacaatccttgtaatcgttgcataaacccatcccctacaa Alignment from Exonerate_protein2genome ATGTACAACCTATGGCCGACGATCATGAAGTACATACCTGGAAAGCATAGAGAATTCTCAAAAAGGCTTGGTGGTGTTAAAAACTTCATCCTAGAAAAAGTGAAGGAGCACCAGGAGTCCCTGGACCCCGCCAACCCTCGGGATTACATCGACTGTTTCCTCAGCAAGATCGAGGAG cacagggagattgttgatacatcctgtcagttaattttcttttttcccagATGTACAACCTATGGCGAATGATTATGAAGTATATACCAGGAAAGCATAGAGAATTCTCAAAACAGCTGGGTGGTGTTAAAAATTTCATCCTAGAAAAAGTGACGGAGCACCAGGAACTGCTGGACCCTGCTAATCCTCGGGACTACATTGATTGTTTCCTTAGCAAGATTGAGGAGgtgagtgagttacaatccttgtaatcgttgcataaacccatcccctacaa Alignment from Exonerate_coding2genome ATGTACAACCTATGGCCGACGATCATGAAGTACATACCTGGAAAGCATAGAGAATTCTCAAAAAGGCTTGGTGGTGTTAAAAACTTCATCCTAGAAAAAGTGAAGGAGCACCAGGAGTCCCTGGACCCCGCCAACCCTCGGGATTACATCGACTGTTTCCTCAGCAAGATCGAGGAG cacagggagattgttgatacatcctgtcagttaattttcttttttcccagATGTACAACCTATGGCGAATGATTATGAAGTATATACCAGGAAAGCATAGAGAATTCTCAAAACAGCTGGGTGGTGTTAAAAATTTCATCCTAGAAAAAGTGACGGAGCACCAGGAACTGCTGGACCCTGCTAATCCTCGGGACTACATTGATTGTTTCCTTAGCAAGATTGAGGAGgtgagtgagttacaatccttgtaatcgttgcataaacccatcccctacaa Alignment from GeneWise ATGTACAACCTATGGCCGACGATCATGAAGTACATACCTGGAAAGCATAGAGAATTCTCAAAAAGGCTTGGTGGTGTTAAAAACTTCATCCTAGAAAAAGTGAAGGAGCACCAGGAGTCCCTGGACCCCGCCAACCCTCGGGATTACATCGACTGTTTCCTCAGCAAGATCGAGGAG cacagggagattgttgatacatcctgtcagttaattttcttttttcccagATGTACAACCTATGGCGAATGATTATGAAGTATATACCAGGAAAGCATAGAGAATTCTCAAAACAGCTGGGTGGTGTTAAAAATTTCATCCTAGAAAAAGTGACGGAGCACCAGGAACTGCTGGACCCTGCTAATCCTCGGGACTACATTGATTGTTTCCTTAGCAAGATTGAGGAGgtgagtgagttacaatccttgtaatcgttgcataaacccatcccctacaa #### Cyp2c50_ID7865_6 --> 0 - 1 Original Alignment GAAAACGGCAACTATCCATTGAAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGTTGAAGTACCCACATGTCACAg ttagtcttccagaaagttcatgaactcaaagttgtttttatatatttcagGAAAACAGTAATTATCCCCTGCAGACTAAACTTGAGCACTTGGCAATCACAGTGCTTGACATTTTTTCTTCTGGTCCAGAGACAATTAGTACAACACTAAGATTTGCTATCGTACTTCTACTAAAGTACTCGCATGTTACTagtaagttgtgcacccccaatggcacctgtcaacatttcctttgtatgagt Alignment from CESAR GAAAACGGCAACTATCCATTGAAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGTTGAAGTACCCACATGTCACAg ttagtcttccagaaagttcatgaactcaaagttgtttttatatatttcagGAAAACAGTAATTATCCCCTGCAGACTAAACTTGAGCACTTGGCAATCACAGTGCTTGACATTTTTTCTTCTGGTCCAGAGACAATTAGTACAACACTAAGATTTGCTATCGTACTTCTACTAAAGTACTCGCATGTTACTagtaagttgtgcacccccaatggcacctgtcaacatttcctttgtatgagt Alignment from Spaln_aa2Genome GAAAACGGCAACTATCCATTGAAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGTTGAAGTACCCACATGTCACAG ttagtcttccagaaagttcatgaactcaaagttgtttttatatatttcagGAAAACAGTAATTATCCCCTGCAGACTAAACTTGAGCACTTGGCAATCACAGTGCTTGACATTTTTTCTTCTGGTCCAGAGACAATTAGTACAACACTAAGATTTGCTATCGTACTTCTACTAAAGTACTCGCATGTTACTAgtaagttgtgcacccccaatggcacctgtcaacatttcctttgtatgagt Alignment from Spaln_nt2Genome GAAAACGGCAACTATCCATTGAAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGTTGAAGTACCCACATGTCACAG ttagtcttccagaaagttcatgaactcaaagttgtttttatatatttcagGAAAACAGTAATTATCCCCTGCAGACTAAACTTGAGCACTTGGCAATCACAGTGCTTGACATTTTTTCTTCTGGTCCAGAGACAATTAGTACAACACTAAGATTTGCTATCGTACTTCTACTAAAGTACTCGCATGTTACTAgtaagttgtgcacccccaatggcacctgtcaacatttcctttgtatgagt Alignment from Pairagon GAAAACGGCAACTATCCATTGAAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGTTGAAGTACCCACATGTCACAG ttagtcttccagaaagttcatgaactcaaagttgtttttatatatttcagGAAAACAGTAATTATCCCCTGCAGACTAAACTTGAGCACTTGGCAATCACAGTGCTTGACATTTTTTCTTCTGGTCCAGAGACAATTAGTACAACACTAAGATTTGCTATCGTACTTCTACTAAAGTACTCGCATGTTACTAgtaagttgtgcacccccaatggcacctgtcaacatttcctttgtatgagt Alignment from Exonerate_protein2genome GAAAACGGCAACTATCCATTGAAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGTTGAAGTACCCACATGTCACAG ttagtcttccagaaagttcatgaactcaaagttgtttttatatatttcagGAAAACAGTAATTATCCCCTGCAGACTAAACTTGAGCACTTGGCAATCACAGTGCTTGACATTTTTTCTTCTGGTCCAGAGACAATTAGTACAACACTAAGATTTGCTATCGTACTTCTACTAAAGTACTCGCATGTTACTAgtaagttgtgcacccccaatggcacctgtcaacatttcctttgtatgagt Alignment from Exonerate_coding2genome GAAAACGGCAACTATCCATTGAAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGTTGAAGTACCCACATGTCACAG ttagtcttccagaaagttcatgaactcaaagttgtttttatatatttcagGAAAACAGTAATTATCCCCTGCAGACTAAACTTGAGCACTTGGCAATCACAGTGCTTGACATTTTTTCTTCTGGTCCAGAGACAATTAGTACAACACTAAGATTTGCTATCGTACTTCTACTAAAGTACTCGCATGTTACTAgtaagttgtgcacccccaatggcacctgtcaacatttcctttgtatgagt Alignment from GeneWise GAAAACGGCAACTATCCATTGAAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGTTGAAGTACCCACATGTCACAG ttagtcttccagaaagttcatgaactcaaagttgtttttatatatttcagGAAAACAGTAATTATCCCCTGCAGACTAAACTTGAGCACTTGGCAATCACAGTGCTTGACATTTTTTCTTCTGGTCCAGAGACAATTAGTACAACACTAAGATTTGCTATCGTACTTCTACTAAAGTACTCGCATGTTACTAgtaagttgtgcacccccaatggcacctgtcaacatttcctttgtatgagt #### Cyp2c50_ID7866_7 --> 2 - 0 Original Alignment ctAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAGCCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATCCCCAAG tggaaatagggagattgagtcccattctggtgcttgcctttcttccacagccAAGGTTGAGGAGGAAATCGGGCATGTGGTCGGGAAGCACCGCAGACCATGTATGCAGGATAGGACCCATATGCCTTACACTGATGCCATGATCCATGAGGTGCAGAGGTTCATTGACCTCAGCCCCAATAGTCTCCCTCATGAAGTGACCTGTGACATTAGGTTCAGGAATTACTTTATTCCTAAGgtagtgctgtgattgatcagatgaaaaggaggtgtgacattcaatacatg Alignment from CESAR ctAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAGCCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATCCCCAAG tggaaatagggagattgagtcccattctggtgcttgcctttcttccacagccAAGGTTGAGGAGGAAATCGGGCATGTGGTCGGGAAGCACCGCAGACCATGTATGCAGGATAGGACCCATATGCCTTACACTGATGCCATGATCCATGAGGTGCAGAGGTTCATTGACCTCAGCCCCAATAGTCTCCCTCATGAAGTGACCTGTGACATTAGGTTCAGGAATTACTTTATTCCTAAGgtagtgctgtgattgatcagatgaaaaggaggtgtgacattcaatacatg Alignment from Spaln_aa2Genome CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAGCCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATCCCCAAG tggaaatagggagattgagtcccattctggtgcttgcctttcttccacagCCAAGGTTGAGGAGGAAATCGGGCATGTGGTCGGGAAGCACCGCAGACCATGTATGCAGGATAGGACCCATATGCCTTACACTGATGCCATGATCCATGAGGTGCAGAGGTTCATTGACCTCAGCCCCAATAGTCTCCCTCATGAAGTGACCTGTGACATTAGGTTCAGGAATTACTTTATTCCTAAGgtagtgctgtgattgatcagatgaaaaggaggtgtgacattcaatacatg Alignment from Spaln_nt2Genome CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAGCCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATCCCCAAG tggaaatagggagattgagtcccattctggtgcttgcctttcttccacagCCAAGGTTGAGGAGGAAATCGGGCATGTGGTCGGGAAGCACCGCAGACCATGTATGCAGGATAGGACCCATATGCCTTACACTGATGCCATGATCCATGAGGTGCAGAGGTTCATTGACCTCAGCCCCAATAGTCTCCCTCATGAAGTGACCTGTGACATTAGGTTCAGGAATTACTTTATTCCTAAGgtagtgctgtgattgatcagatgaaaaggaggtgtgacattcaatacatg Alignment from Pairagon CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAGCCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATCCCCAAG tggaaatagggagattgagtcccattctggtgcttgcctttcttccacagCCAAGGTTGAGGAGGAAATCGGGCATGTGGTCGGGAAGCACCGCAGACCATGTATGCAGGATAGGACCCATATGCCTTACACTGATGCCATGATCCATGAGGTGCAGAGGTTCATTGACCTCAGCCCCAATAGTCTCCCTCATGAAGTGACCTGTGACATTAGGTTCAGGAATTACTTTATTCCTAAGgtagtgctgtgattgatcagatgaaaaggaggtgtgacattcaatacatg Alignment from Exonerate_protein2genome CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAGCCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATCCCCAAGGGGACAAA tggaaatagggagattgagtcccattctggtgcttgcctttcttccacagCCAAGGTTGAGGAGGAAATCGGGCATGTGGTCGGGAAGCACCGCAGACCATGTATGCAGGATAGGACCCATATGCCTTACACTGATGCCATGATCCATGAGGTGCAGAGGTTCATTGACCTCAGCCCCAATAGTCTCCCTCATGAAGTGACCTGTGACATTAGGTTCAGGAATTACTTTATTCCTAAGGTAGTGCTgtgattgatcagatgaaaaggaggtgtgacattcaatacatg Alignment from Exonerate_coding2genome CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAGCCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATCCCCAAG tggaaatagggagattgagtcccattctggtgcttgcctttcttccacagCCAAGGTTGAGGAGGAAATCGGGCATGTGGTCGGGAAGCACCGCAGACCATGTATGCAGGATAGGACCCATATGCCTTACACTGATGCCATGATCCATGAGGTGCAGAGGTTCATTGACCTCAGCCCCAATAGTCTCCCTCATGAAGTGACCTGTGACATTAGGTTCAGGAATTACTTTATTCCTAAGgtagtgctgtgattgatcagatgaaaaggaggtgtgacattcaatacatg Alignment from GeneWise CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAGCCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATCCCCAAG tggaaatagggagattgagtcccattctggtgcttgcctttcttccacagCCAAGGTTGAGGAGGAAATCGGGCATGTGGTCGGGAAGCACCGCAGACCATGTATGCAGGATAGGACCCATATGCCTTACACTGATGCCATGATCCATGAGGTGCAGAGGTTCATTGACCTCAGCCCCAATAGTCTCCCTCATGAAGTGACCTGTGACATTAGGTTCAGGAATTACTTTATTCCTAAGgtagtgctgtgattgatcagatgaaaaggaggtgtgacattcaatacatg #### Cyp2c54_ID7851_7 --> 2 - 0 Original Alignment ctAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACAAATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAACCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATTCCCAAG gcacacacaagcctatgctgcagtctttagtgtcaacttctttatcacagctAAGGTGCAGGTAGAAATTGAGCATGTGATTGGCAAGCATAGAAGACCTTGCATGCAGGATAGACGGCACATGCCTTACACAAATGCTATAAATCACCAAGTTCAGAGATTTATTGATATTGTCCCTAACAATCTGCCTCACGAAGTGACTTGTGATATTAAATTTCGGAACTACTTTATACCCAAGgtaaggttcatgatttgtgcctaattctccatatacaggtagaacctcaa Alignment from CESAR ctAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACAAATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAACCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATTCCCAAG gcacacacaagcctatgctgcagtctttagtgtcaacttctttatcacagctAAGGTGCAGGTAGAAATTGAGCATGTGATTGGCAAGCATAGAAGACCTTGCATGCAGGATAGACGGCACATGCCTTACACAAATGCTATAAATCACCAAGTTCAGAGATTTATTGATATTGTCCCTAACAATCTGCCTCACGAAGTGACTTGTGATATTAAATTTCGGAACTACTTTATACCCAAGgtaaggttcatgatttgtgcctaattctccatatacaggtagaacctcaa Alignment from Spaln_aa2Genome CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACAAATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAACCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATTCCCAAG gcacacacaagcctatgctgcagtctttagtgtcaacttctttatcacagCTAAGGTGCAGGTAGAAATTGAGCATGTGATTGGCAAGCATAGAAGACCTTGCATGCAGGATAGACGGCACATGCCTTACACAAATGCTATAAATCACCAAGTTCAGAGATTTATTGATATTGTCCCTAACAATCTGCCTCACGAAGTGACTTGTGATATTAAATTTCGGAACTACTTTATACCCAAGgtaaggttcatgatttgtgcctaattctccatatacaggtagaacctcaa Alignment from Spaln_nt2Genome CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACAAATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAACCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATTCCCAAG gcacacacaagcctatgctgcagtctttagtgtcaacttctttatcacagCTAAGGTGCAGGTAGAAATTGAGCATGTGATTGGCAAGCATAGAAGACCTTGCATGCAGGATAGACGGCACATGCCTTACACAAATGCTATAAATCACCAAGTTCAGAGATTTATTGATATTGTCCCTAACAATCTGCCTCACGAAGTGACTTGTGATATTAAATTTCGGAACTACTTTATACCCAAGgtaaggttcatgatttgtgcctaattctccatatacaggtagaacctcaa Alignment from Pairagon CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACAAATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAACCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATTCCCAAG gcacacacaagcctatgctgcagtctttagtgtcaacttctttatcacagCTAAGGTGCAGGTAGAAATTGAGCATGTGATTGGCAAGCATAGAAGACCTTGCATGCAGGATAGACGGCACATGCCTTACACAAATGCTATAAATCACCAAGTTCAGAGATTTATTGATATTGTCCCTAACAATCTGCCTCACGAAGTGACTTGTGATATTAAATTTCGGAACTACTTTATACCCAAGgtaaggttcatgatttgtgcctaattctccatatacaggtagaacctcaa Alignment from Exonerate_protein2genome CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACAAATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAACCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATTCCCAAG gcacacacaagcctatgctgcagtctttagtgtcaacttctttatcacagCTAAGGTGCAGGTAGAAATTGAGCATGTGATTGGCAAGCATAGAAGACCTTGCATGCAGGATAGACGGCACATGCCTTACACAAATGCTATAAATCACCAAGTTCAGAGATTTATTGATATTGTCCCTAACAATCTGCCTCACGAAGTGACTTGTGATATTAAATTTCGGAACTACTTTATACCCAAGgtaaggttcatgatttgtgcctaattctccatatacaggtagaacctcaa Alignment from Exonerate_coding2genome CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACAAATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAACCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATTCCCAAG gcacacacaagcctatgctgcagtctttagtgtcaacttctttatcacagCTAAGGTGCAGGTAGAAATTGAGCATGTGATTGGCAAGCATAGAAGACCTTGCATGCAGGATAGACGGCACATGCCTTACACAAATGCTATAAATCACCAAGTTCAGAGATTTATTGATATTGTCCCTAACAATCTGCCTCACGAAGTGACTTGTGATATTAAATTTCGGAACTACTTTATACCCAAGgtaaggttcatgatttgtgcctaattctccatatacaggtagaacctcaa Alignment from GeneWise ATTGAAGTACCCACATGTCACAGCTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACAAATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAACCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATTCCCAAG cacacaagcctatgctgcagtctttagTGTCAACTTC---TTTATCACAGCTAAGGTGCAGGTAGAAATTGAGCATGTGATTGGCAAGCATAGAAGACCTTGCATGCAGGATAGACGGCACATGCCTTACACAAATGCTATAAATCACCAAGTTCAGAGATTTATTGATATTGTCCCTAACAATCTGCCTCACGAAGTGACTTGTGATATTAAATTTCGGAACTACTTTATACCCAAGgtaaggttcatgatttgtgcctaattctccatatacaggtagaacctcaa #### Cyp2c54_ID7854_4 --> 2 - 0 Original Alignment gcTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTAAACTTGTTGGAAAAACTGGATGAAATATCCAAGATTCTGAGCACCCCCTGGTTGCAG atggactgataacactagataacactactttgtttgtttgtttgtttcaggaTCACCTTGTTACCCCACCTTCATCCTAGGCTGTGCTCCCTGCAATGTTATTTGTTCAATTATATTCCAGGACTATTTGGATTACAAAGACCAGGATTTTTTAAACCTGTTGGCAAAATTGGATGAAATGTCCAAGATTCTGAGCACACCATGGCTGGAGgtgagctcatcatctacaggcattgaatcctgtacagacattcagcaaac Alignment from CESAR gcTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTAAACTTGTTGGAAAAACTGGATGAAATATCCAAGATTCTGAGCACCCCCTGGTTGCAG atggactgataacactagataacactactttgtttgtttgtttgtttcaggaTCACCTTGTTACCCCACCTTCATCCTAGGCTGTGCTCCCTGCAATGTTATTTGTTCAATTATATTCCAGGACTATTTGGATTACAAAGACCAGGATTTTTTAAACCTGTTGGCAAAATTGGATGAAATGTCCAAGATTCTGAGCACACCATGGCTGGAGgtgagctcatcatctacaggcattgaatcctgtacagacattcagcaaac Alignment from Spaln_aa2Genome GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTAAACTTGTTGGAAAAACTGGATGAAATATCCAAGATTCTGAGCACCCCCTGGTTGCAG atggactgataacactagataacactactttgtttgtttgtttgtttcagGATCACCTTGTTACCCCACCTTCATCCTAGGCTGTGCTCCCTGCAATGTTATTTGTTCAATTATATTCCAGGACTATTTGGATTACAAAGACCAGGATTTTTTAAACCTGTTGGCAAAATTGGATGAAATGTCCAAGATTCTGAGCACACCATGGCTGGAGgtgagctcatcatctacaggcattgaatcctgtacagacattcagcaaac Alignment from Spaln_nt2Genome GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTAAACTTGTTGGAAAAACTGGATGAAATATCCAAGATTCTGAGCACCCCCTGGTTGCAG atggactgataacactagataacactactttgtttgtttgtttgtttcagGATCACCTTGTTACCCCACCTTCATCCTAGGCTGTGCTCCCTGCAATGTTATTTGTTCAATTATATTCCAGGACTATTTGGATTACAAAGACCAGGATTTTTTAAACCTGTTGGCAAAATTGGATGAAATGTCCAAGATTCTGAGCACACCATGGCTGGAGgtgagctcatcatctacaggcattgaatcctgtacagacattcagcaaac Alignment from Pairagon GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTAAACTTGTTGGAAAAACTGGATGAAATATCCAAGATTCTGAGCACCCCCTGGTTGCAG atggactgataacactagataacactactttgtttgtttgtttgtttcagGATCACCTTGTTACCCCACCTTCATCCTAGGCTGTGCTCCCTGCAATGTTATTTGTTCAATTATATTCCAGGACTATTTGGATTACAAAGACCAGGATTTTTTAAACCTGTTGGCAAAATTGGATGAAATGTCCAAGATTCTGAGCACACCATGGCTGGAGgtgagctcatcatctacaggcattgaatcctgtacagacattcagcaaac Alignment from Exonerate_protein2genome GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTAAACTTGTTGGAAAAACTGGATGAAATATCCAAGATTCTGAGCACCCCCTGGTTGCAG atggactgataacactagataacactactttgtttgtttgtttgtttcagGATCACCTTGTTACCCCACCTTCATCCTAGGCTGTGCTCCCTGCAATGTTATTTGTTCAATTATATTCCAGGACTATTTGGATTACAAAGACCAGGATTTTTTAAACCTGTTGGCAAAATTGGATGAAATGTCCAAGATTCTGAGCACACCATGGCTGGAGgtgagctcatcatctacaggcattgaatcctgtacagacattcagcaaac Alignment from Exonerate_coding2genome GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTAAACTTGTTGGAAAAACTGGATGAAATATCCAAGATTCTGAGCACCCCCTGGTTGCAG atggactgataacactagataacactactttgtttgtttgtttgtttcagGATCACCTTGTTACCCCACCTTCATCCTAGGCTGTGCTCCCTGCAATGTTATTTGTTCAATTATATTCCAGGACTATTTGGATTACAAAGACCAGGATTTTTTAAACCTGTTGGCAAAATTGGATGAAATGTCCAAGATTCTGAGCACACCATGGCTGGAGgtgagctcatcatctacaggcattgaatcctgtacagacattcagcaaac Alignment from GeneWise GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTAAACTTGTTGGAAAAACTGGATGAAATATCCAAGATTCTGAGCACCCCCTGGTTGCAG atggactgataacactagataacactactttgtttgtttgtttgtttcagGATCACCTTGTTACCCCACCTTCATCCTAGGCTGTGCTCCCTGCAATGTTATTTGTTCAATTATATTCCAGGACTATTTGGATTACAAAGACCAGGATTTTTTAAACCTGTTGGCAAAATTGGATGAAATGTCCAAGATTCTGAGCACACCATGGCTGGAGgtgagctcatcatctacaggcattgaatcctgtacagacattcagcaaac #### Cyp2c55_ID7726_3 --> 2 - 1 Original Alignment ggGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATCGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATg atattcagagcaatttttcagtggtggctgtacctctcttctggtgccaggg---ATTTTTAGTAATGGAACAAAATGGAAAGAGCTTTGGTGCTTTTCAACTATGACTTTGAGGAGTTTTGGAATGGGGAAGAAGAGCATAGAGGATTGCATTCAAGAGGAAGCATCCTGCCTTGTGGAAAAGCTCAGAAAGCCCAACggtaagcatcacatggcaaattgctgatgtggaagtgacacacactaccag Alignment from CESAR ggGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATCGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATg atattcagagcaatttttcagtggtggctgtacctctcttctggtgccaggg---ATTTTTAGTAATGGAACAAAATGGAAAGAGCTTTGGTGCTTTTCAACTATGACTTTGAGGAGTTTTGGAATGGGGAAGAAGAGCATAGAGGATTGCATTCAAGAGGAAGCATCCTGCCTTGTGGAAAAGCTCAGAAAGCCCAACggtaagcatcacatggcaaattgctgatgtggaagtgacacacactaccag Alignment from Spaln_aa2Genome GGGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATCGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATG atattcagagcaatttttcagtggtggctgtacctctcttctggtgccagGG---ATTTTTAGTAATGGAACAAAATGGAAAGAGCTTTGGTGCTTTTCAACTATGACTTTGAGGAGTTTTGGAATGGGGAAGAAGAGCATAGAGGATTGCATTCAAGAGGAAGCATCCTGCCTTGTGGAAAAGCTCAGAAAGCCCAACGgtaagcatcacatggcaaattgctgatgtggaagtgacacacactaccag Alignment from Spaln_nt2Genome GGGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATCGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATG atattcagagcaatttttcagtggtggctgtacctctcttctggtgccagG---GATTTTTAGTAATGGAACAAAATGGAAAGAGCTTTGGTGCTTTTCAACTATGACTTTGAGGAGTTTTGGAATGGGGAAGAAGAGCATAGAGGATTGCATTCAAGAGGAAGCATCCTGCCTTGTGGAAAAGCTCAGAAAGCCCAACGgtaagcatcacatggcaaattgctgatgtggaagtgacacacactaccag Alignment from Pairagon GGGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATCGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATG atattcagagcaatttttcagtggtggctgtacctctcttctggtgccagG---GATTTTTAGTAATGGAACAAAATGGAAAGAGCTTTGGTGCTTTTCAACTATGACTTTGAGGAGTTTTGGAATGGGGAAGAAGAGCATAGAGGATTGCATTCAAGAGGAAGCATCCTGCCTTGTGGAAAAGCTCAGAAAGCCCAACGgtaagcatcacatggcaaattgctgatgtggaagtgacacacactaccag Alignment from Exonerate_protein2genome GGGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATCGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATG atattcagagcaatttttcagtggtggctgtacctctcttctggtgccagGG---ATTTTTAGTAATGGAACAAAATGGAAAGAGCTTTGGTGCTTTTCAACTATGACTTTGAGGAGTTTTGGAATGGGGAAGAAGAGCATAGAGGATTGCATTCAAGAGGAAGCATCCTGCCTTGTGGAAAAGCTCAGAAAGCCCAACGgtaagcatcacatggcaaattgctgatgtggaagtgacacacactaccag Alignment from Exonerate_coding2genome GGGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATCGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATG atattcagagcaatttttcagtggtggctgtacctctcttctggtgccagGG---ATTTTTAGTAATGGAACAAAATGGAAAGAGCTTTGGTGCTTTTCAACTATGACTTTGAGGAGTTTTGGAATGGGGAAGAAGAGCATAGAGGATTGCATTCAAGAGGAAGCATCCTGCCTTGTGGAAAAGCTCAGAAAGCCCAACGgtaagcatcacatggcaaattgctgatgtggaagtgacacacactaccag Alignment from GeneWise GGGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATCGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATG atattcagagcaatttttcagtggtggctgtacctctcttctggtgccagGG---ATTTTTAGTAATGGAACAAAATGGAAAGAGCTTTGGTGCTTTTCAACTATGACTTTGAGGAGTTTTGGAATGGGGAAGAAGAGCATAGAGGATTGCATTCAAGAGGAAGCATCCTGCCTTGTGGAAAAGCTCAGAAAGCCCAACGgtaagcatcacatggcaaattgctgatgtggaagtgacacacactaccag #### Cyp2c55_ID7730_7 --> 2 - 0 Original Alignment ctAAAGTCCAGGCAGAGATCGATCACGTGATTGGCAGACACAGGAGCCCCTGCATGCAGGACAGAACCCGCATGCCCTACACAGATGCCATGGTACATGAGATTCAGAGATACATTGACCTCATCCCCAACAATGTGCCCCATGCAGCTACCTGTAATGTTAGATTCAGAAGTTACTTCATCCCCAAG attgaccattgactgcatatctgcaccctttttttttttgttgttcacagctAAAGCCCAGGCAGAGATTGATCAAGTGATTGGTAGACACAGAAGTCCTTGCATGCAGGATAGAACCAGTAAGCCCTATACCGATGCCATGGTGCATGAGACTCAAAGATACATTGACCTAATCCCCAACAATGTGCCCCATGCAGCTATCTGTAATGTGAGATTTAGAAGTTACTTCGTTCCCAGGgtgagtatcatctttggattatgcatctgcctgtcccagtgttcctacaa Alignment from CESAR ctAAAGTCCAGGCAGAGATCGATCACGTGATTGGCAGACACAGGAGCCCCTGCATGCAGGACAGAACCCGCATGCCCTACACAGATGCCATGGTACATGAGATTCAGAGATACATTGACCTCATCCCCAACAATGTGCCCCATGCAGCTACCTGTAATGTTAGATTCAGAAGTTACTTCATCCCCAAG attgaccattgactgcatatctgcaccctttttttttttgttgttcacagctAAAGCCCAGGCAGAGATTGATCAAGTGATTGGTAGACACAGAAGTCCTTGCATGCAGGATAGAACCAGTAAGCCCTATACCGATGCCATGGTGCATGAGACTCAAAGATACATTGACCTAATCCCCAACAATGTGCCCCATGCAGCTATCTGTAATGTGAGATTTAGAAGTTACTTCGTTCCCAGGgtgagtatcatctttggattatgcatctgcctgtcccagtgttcctacaa Alignment from Spaln_aa2Genome CTAAAGTCCAGGCAGAGATCGATCACGTGATTGGCAGACACAGGAGCCCCTGCATGCAGGACAGAACCCGCATGCCCTACACAGATGCCATGGTACATGAGATTCAGAGATACATTGACCTCATCCCCAACAATGTGCCCCATGCAGCTACCTGTAATGTTAGATTCAGAAGTTACTTCATCCCCAAG attgaccattgactgcatatctgcaccctttttttttttgttgttcacagCTAAAGCCCAGGCAGAGATTGATCAAGTGATTGGTAGACACAGAAGTCCTTGCATGCAGGATAGAACCAGTAAGCCCTATACCGATGCCATGGTGCATGAGACTCAAAGATACATTGACCTAATCCCCAACAATGTGCCCCATGCAGCTATCTGTAATGTGAGATTTAGAAGTTACTTCGTTCCCAGGgtgagtatcatctttggattatgcatctgcctgtcccagtgttcctacaa Alignment from Spaln_nt2Genome CTAAAGTCCAGGCAGAGATCGATCACGTGATTGGCAGACACAGGAGCCCCTGCATGCAGGACAGAACCCGCATGCCCTACACAGATGCCATGGTACATGAGATTCAGAGATACATTGACCTCATCCCCAACAATGTGCCCCATGCAGCTACCTGTAATGTTAGATTCAGAAGTTACTTCATCCCCAAG attgaccattgactgcatatctgcaccctttttttttttgttgttcacagCTAAAGCCCAGGCAGAGATTGATCAAGTGATTGGTAGACACAGAAGTCCTTGCATGCAGGATAGAACCAGTAAGCCCTATACCGATGCCATGGTGCATGAGACTCAAAGATACATTGACCTAATCCCCAACAATGTGCCCCATGCAGCTATCTGTAATGTGAGATTTAGAAGTTACTTCGTTCCCAGGgtgagtatcatctttggattatgcatctgcctgtcccagtgttcctacaa Alignment from Pairagon CTAAAGTCCAGGCAGAGATCGATCACGTGATTGGCAGACACAGGAGCCCCTGCATGCAGGACAGAACCCGCATGCCCTACACAGATGCCATGGTACATGAGATTCAGAGATACATTGACCTCATCCCCAACAATGTGCCCCATGCAGCTACCTGTAATGTTAGATTCAGAAGTTACTTCATCCCCAAG attgaccattgactgcatatctgcaccctttttttttttgttgttcacagCTAAAGCCCAGGCAGAGATTGATCAAGTGATTGGTAGACACAGAAGTCCTTGCATGCAGGATAGAACCAGTAAGCCCTATACCGATGCCATGGTGCATGAGACTCAAAGATACATTGACCTAATCCCCAACAATGTGCCCCATGCAGCTATCTGTAATGTGAGATTTAGAAGTTACTTCGTTCCCAGGgtgagtatcatctttggattatgcatctgcctgtcccagtgttcctacaa Alignment from Exonerate_protein2genome CTAAAGTCCAGGCAGAGATCGATCACGTGATTGGCAGACACAGGAGCCCCTGCATGCAGGACAGAACCCGCATGCCCTACACAGATGCCATGGTACATGAGATTCAGAGATACATTGACCTCATCCCCAACAATGTGCCCCATGCAGCTACCTGTAATGTTAGATTCAGAAGTTACTTCATCCCCAAG attgaccattgactgcatatctgcaccctttttttttttgttgttcacagCTAAAGCCCAGGCAGAGATTGATCAAGTGATTGGTAGACACAGAAGTCCTTGCATGCAGGATAGAACCAGTAAGCCCTATACCGATGCCATGGTGCATGAGACTCAAAGATACATTGACCTAATCCCCAACAATGTGCCCCATGCAGCTATCTGTAATGTGAGATTTAGAAGTTACTTCGTTCCCAGGgtgagtatcatctttggattatgcatctgcctgtcccagtgttcctacaa Alignment from Exonerate_coding2genome CTAAAGTCCAGGCAGAGATCGATCACGTGATTGGCAGACACAGGAGCCCCTGCATGCAGGACAGAACCCGCATGCCCTACACAGATGCCATGGTACATGAGATTCAGAGATACATTGACCTCATCCCCAACAATGTGCCCCATGCAGCTACCTGTAATGTTAGATTCAGAAGTTACTTCATCCCCAAG attgaccattgactgcatatctgcaccctttttttttttgttgttcacagCTAAAGCCCAGGCAGAGATTGATCAAGTGATTGGTAGACACAGAAGTCCTTGCATGCAGGATAGAACCAGTAAGCCCTATACCGATGCCATGGTGCATGAGACTCAAAGATACATTGACCTAATCCCCAACAATGTGCCCCATGCAGCTATCTGTAATGTGAGATTTAGAAGTTACTTCGTTCCCAGGgtgagtatcatctttggattatgcatctgcctgtcccagtgttcctacaa Alignment from GeneWise CTAAAGTCCAGGCAGAGATCGATCACGTGATTGGCAGACACAGGAGCCCCTGCATGCAGGACAGAACCCGCATGCCCTACACAGATGCCATGGTACATGAGATTCAGAGATACATTGACCTCATCCCCAACAATGTGCCCCATGCAGCTACCTGTAATGTTAGATTCAGAAGTTACTTCATCCCCAAG attgaccattgactgcatatctgcaccctttttttttttgttgttcacagCTAAAGCCCAGGCAGAGATTGATCAAGTGATTGGTAGACACAGAAGTCCTTGCATGCAGGATAGAACCAGTAAGCCCTATACCGATGCCATGGTGCATGAGACTCAAAGATACATTGACCTAATCCCCAACAATGTGCCCCATGCAGCTATCTGTAATGTGAGATTTAGAAGTTACTTCGTTCCCAGGgtgagtatcatctttggattatgcatctgcctgtcccagtgttcctacaa #### Cyp2c65_ID7737_3 --> 2 - 1 Original Alignment ggGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAg atgtgtcgcctgcctaggtagcccccaccttttctctgatttctttatagggGCTGTTTTCAGCAGTGGGAGAACCTGGAAAGGGATGAGGGGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGCGGAGAAGTATTGAGGATCGAATTCAGGAGGAAGCCCGATGTCTTGTGGATGAACTAAGGAAAACCAAAggtagctattacattctttgtacttttgaccttcacacgattcctcactgt Alignment from CESAR ggGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAg atgtgtcgcctgcctaggtagcccccaccttttctctgatttctttatagggGCTGTTTTCAGCAGTGGGAGAACCTGGAAAGGGATGAGGGGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGCGGAGAAGTATTGAGGATCGAATTCAGGAGGAAGCCCGATGTCTTGTGGATGAACTAAGGAAAACCAAAggtagctattacattctttgtacttttgaccttcacacgattcctcactgt Alignment from Spaln_aa2Genome GGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG atgtgtcgcctgcctaggtagcccccaccttttctctgatttctttatagGGGCTGTTTTCAGCAGTGGGAGAACCTGGAAAGGGATGAGGGGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGCGGAGAAGTATTGAGGATCGAATTCAGGAGGAAGCCCGATGTCTTGTGGATGAACTAAGGAAAACCAAAGgtagctattacattctttgtacttttgaccttcacacgattcctcactgt Alignment from Spaln_nt2Genome GGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG atgtgtcgcctgcctaggtagcccccaccttttctctgatttctttatagGGGCTGTTTTCAGCAGTGGGAGAACCTGGAAAGGGATGAGGGGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGCGGAGAAGTATTGAGGATCGAATTCAGGAGGAAGCCCGATGTCTTGTGGATGAACTAAGGAAAACCAAAGgtagctattacattctttgtacttttgaccttcacacgattcctcactgt Alignment from Pairagon GGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG atgtgtcgcctgcctaggtagcccccaccttttctctgatttctttatagGGGCTGTTTTCAGCAGTGGGAGAACCTGGAAAGGGATGAGGGGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGCGGAGAAGTATTGAGGATCGAATTCAGGAGGAAGCCCGATGTCTTGTGGATGAACTAAGGAAAACCAAAGgtagctattacattctttgtacttttgaccttcacacgattcctcactgt Alignment from Exonerate_protein2genome GGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG atgtgtcgcctgcctaggtagcccccaccttttctctgatttctttatagGGGCTGTTTTCAGCAGTGGGAGAACCTGGAAAGGGATGAGGGGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGCGGAGAAGTATTGAGGATCGAATTCAGGAGGAAGCCCGATGTCTTGTGGATGAACTAAGGAAAACCAAAGgtagctattacattctttgtacttttgaccttcacacgattcctcactgt Alignment from Exonerate_coding2genome GGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG atgtgtcgcctgcctaggtagcccccaccttttctctgatttctttatagGGGCTGTTTTCAGCAGTGGGAGAACCTGGAAAGGGATGAGGGGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGCGGAGAAGTATTGAGGATCGAATTCAGGAGGAAGCCCGATGTCTTGTGGATGAACTAAGGAAAACCAAAGgtagctattacattctttgtacttttgaccttcacacgattcctcactgt Alignment from GeneWise GGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG atgtgtcgcctgcctaggtagcccccaccttttctctgatttctttatagGGGCTGTTTTCAGCAGTGGGAGAACCTGGAAAGGGATGAGGGGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGCGGAGAAGTATTGAGGATCGAATTCAGGAGGAAGCCCGATGTCTTGTGGATGAACTAAGGAAAACCAAAGgtagctattacattctttgtacttttgaccttcacacgattcctcactgt #### Cyp2c65_ID7740_6 --> 0 - 1 Original Alignment GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGGTCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTAC------TCTCTGCTGCTCCTGCTCAAGTATCCAGAAGTCACAg ggttgccatcatgaatacatggttgggtactgcgtcctcttgctccacagGACAAGCATAACCCTAAGGCAGAGTTTAGTTGTGAAAACTTAGTCTTTACATCTTCCGAG---TTTGGTGATGGGGCAGAAACAACAAGTACAACCCTTAGGTACTGGTATTCACTG---------CTCAAGTATCCA---GTGACAagcaagggctcatggctgttttggaaacccgtaatgcgaaacttgcaacta Alignment from CESAR GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGGTCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTAC------TCTCTGCTGCTCCTGCTCAAGTATCCAGAAGTCACAg ggttgccatcatgaatacatggttgggtactgcgtcctcttgctccacagGACAAGCATAACCCTAAGGCAGAGTTTAGTTGTGAAAACTTAGTCTTTACATCTTCCGAG---TTTGGTGATGGGGCAGAAACAACAAGTACAACCCTTAGGTACTGGTATTCA---------CTGCTCAAGTATCCA---GTGACAagcaagggctcatggctgttttggaaacccgtaatgcgaaacttgcaacta Alignment from Spaln_aa2Genome GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGGTCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTACTCTCTGCTGCTCCTGCTCAAGTATCCAGAAGTCACAG ggttgccatcatgaatacatggttgggtactgcgtcctcttgctccacagGACAAGCATAACCCTAAGGCAGAGTTTAGTTGTGAAAACTTAGTCTTTACATCTTCCGAG---TTTGGTGATGGGGCAGAAACAACAAGTACAACCCTTAGGTAC---TGGTATTCACTGCTCAAGTATCCA---GTGACAAgcaagggctcatggctgttttggaaacccgtaatgcgaaacttgcaacta Alignment from Spaln_nt2Genome GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGGTCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTACTCTCTGCTGCTC-CTGCTCAAGTATCCAGAAGTCACAG ggttgccatcatgaatacatggttgggtactgcgtcctcttgctccacagGACAAGCATAACCCTAAGGCAGAGTTTAGTTGTGAAAACTTAGTCTTTACATCTTCCGA---GTTTGGTGATGGGGCAGAAACAACAAGTACAACCCTTAGGTA----CTGGTATTCACTGCTCAAGTATCC---AGTGACAAgcaagggctcatggctgttttggaaacccgtaatgcgaaacttgcaacta Alignment from Pairagon GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGGTCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTACT--------CTCTGCTGCTCCTGCTCAAGTATCCA ggttgccatcatgaatacatggttgggtactgcgtcctcttgctccacagGACAAGCATAACCCTAAGGCAGAGTTTAGTTGTGAAAACTTAGTCTTTACATCTTCCGA---GTTTGGTGATGGGGCAGAAACAACAAGTACAACCCTTAGGTACTGGTATTCAC-----------TGCTCAAGTATCCAgtgacaagcaagggctcatggctgttttggaaacccgtaatgcgaaacttgcaacta Alignment from Exonerate_protein2genome GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGGTCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTACTCTCTGCTGCTCCTGCTCAAGTATCCAGAAGTCA ggttgccatcatgaatacatggttgggtactgcgtcctcttgctccacagGACAAGCATAACCCTAAGGCAGAGTTTAGTTGTGAAAACTTAGTCTTTACATCTTCCGAG---TTTGGTGATGGGGCAGAAACAACAAGTACAACCCTTAGGTAC---TGGTATTCACTGCTCAAGTATCCAGTGACAAgcaagggctcatggctgttttggaaacccgtaatgcgaaacttgcaacta Alignment from Exonerate_coding2genome ggttgccatcatgaatacatggttgggtactgcgtcctcttgctccacaggacaagcataaccctaaggcagagtttagttgtgaaaacttagtctttacatcttccgagtttggtgatggggcagaaacaacaagtacaacccttaggtactggtattcactgctcaagtatccagtgacaagcaagggctcatggctgttttggaaacccgtaatgcgaaacttgcaacta Alignment from GeneWise GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGGTCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTAC------TCTCTGCTGCT ggttgccatcatgaatacatggttgggtactgcgtcctcttgctccacagGACAAGCATAACCCTAAGGCAGAGTTTAGTTGTGAAAACTTAGTCTTTACATCTTCCGAG---TTTGGTGATGGGGCAGAAACAACAAGTACAACCCTTAGGTACTGGTATTCACTGCTCAAgtatccagtgacaagcaagggctcatggctgttttggaaacccgtaatgcgaaacttgcaacta #### Cyp2c67_ID7795_7 --> 2 - 0 Original Alignment ctAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCATGAAGTAACCTGTGAC---------------ACTAAGTTCAGAAACTACTTCATCCCCAAG tttcttagcagctagccacatgttatcctttcttgttctatgagttccagctAAAGTTCAGGAAGAGAGTGACAACTTGATTGGAAGACACAGGAGCCCTTGTATGCAAGACAGGAACCAT---------ACAACTGTAATGGTACAAGAAATTCAACAGTATGTTGACCTTGGCCCAATTAGTTTGGTACATGAAGTTTCATGTGATGAAGTCACCTGTGACATAAAGCTTGGAAACTACTTCATCCCTAAAgtaattttttcttcacagtgtcccctttacatgccctttgtaggatacct Alignment from CESAR ctAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCATGAAGTA---------------ACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG tttcttagcagctagccacatgttatcctttcttgttctatgagttccagctAAAGTTCAGGAAGAGAGTGACAACTTGATTGGAAGACACAGGAGCCCTTGTATGCAAGACAGGAACCAT---------ACAACTGTAATGGTACAAGAAATTCAACAGTATGTTGACCTTGGCCCAATTAGTTTGGTACATGAAGTTTCATGTGATGAAGTCACCTGTGACATAAAGCTTGGAAACTACTTCATCCCTAAAgtaattttttcttcacagtgtcccctttacatgccctttgtaggatacct Alignment from Spaln_aa2Genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCATGAAGTA---------------ACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG tttcttagcagctagccacatgttatcctttcttgttctatgagttccagCTAAAGTTCAGGAAGAGAGTGACAACTTGATTGGAAGACACAGGAGCCCTTGTATGCAAGACAGGAACCAT---------ACAACTGTAATGGTACAAGAAATTCAACAGTATGTTGACCTTGGCCCAATTAGTTTGGTACATGAAGTTTCATGTGATGAAGTCACCTGTGACATAAAGCTTGGAAACTACTTCATCCCTAAAgtaattttttcttcacagtgtcccctttacatgccctttgtaggatacct Alignment from Spaln_nt2Genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCATGAAGTA---------------ACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG tttcttagcagctagccacatgttatcctttcttgttctatgagttccagCTAAAGTTCAGGAAGAGAGTGACAACTTGATTGGAAGACACAGGAGCCCTTGTATGCAAGACAGGAACCAT---------ACAACTGTAATGGTACAAGAAATTCAACAGTATGTTGACCTTGGCCCAATTAGTTTGGTACATGAAGTTTCATGTGATGAAGTCACCTGTGACATAAAGCTTGGAAACTACTTCATCCCTAAAgtaattttttcttcacagtgtcccctttacatgccctttgtaggatacct Alignment from Pairagon CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGC---------------ATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG tttcttagcagctagccacatgttatcctttcttgttctatgagttccagCTAAAGTTCAGGAAGAGAGTGACAACTTGATTGGAAGACACAGGAGCCCTTGTATGCAAGACAGGAACCAT---------ACAACTGTAATGGTACAAGAAATTCAACAGTATGTTGACCTTGGCCCAATTAGTTTGGTACATGAAGTTTCATGTGATGAAGTCACCTGTGACATAAAGCTTGGAAACTACTTCATCCCTAAAgtaattttttcttcacagtgtcccctttacatgccctttgtaggatacct Alignment from Exonerate_protein2genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCAT---------------GAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG tttcttagcagctagccacatgttatcctttcttgttctatgagttccagCTAAAGTTCAGGAAGAGAGTGACAACTTGATTGGAAGACACAGGAGCCCTTGTATGCAAGACAGGAACCAT---------ACAACTGTAATGGTACAAGAAATTCAACAGTATGTTGACCTTGGCCCAATTAGTTTGGTACATGAAGTTTCATGTGATGAAGTCACCTGTGACATAAAGCTTGGAAACTACTTCATCCCTAAAgtaattttttcttcacagtgtcccctttacatgccctttgtaggatacct Alignment from Exonerate_coding2genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCAT---------------GAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG tttcttagcagctagccacatgttatcctttcttgttctatgagttccagCTAAAGTTCAGGAAGAGAGTGACAACTTGATTGGAAGACACAGGAGCCCTTGTATGCAAGACAGGAACCAT---------ACAACTGTAATGGTACAAGAAATTCAACAGTATGTTGACCTTGGCCCAATTAGTTTGGTACATGAAGTTTCATGTGATGAAGTCACCTGTGACATAAAGCTTGGAAACTACTTCATCCCTAAAgtaattttttcttcacagtgtcccctttacatgccctttgtaggatacct Alignment from GeneWise CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCAT---------------GAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG tttcttagcagctagccacatgttatcctttcttgttctatgagttccagCTAAAGTTCAGGAAGAGAGTGACAACTTGATTGGAAGACACAGGAGCCCTTGTATGCAAGACAGGAACCAT---------ACAACTGTAATGGTACAAGAAATTCAACAGTATGTTGACCTTGGCCCAATTAGTTTGGTACATGAAGTTTCATGTGATGAAGTCACCTGTGACATAAAGCTTGGAAACTACTTCATCCCTAAAgtaattttttcttcacagtgtcccctttacatgccctttgtaggatacct #### Cyp2c67_ID7799_3 --> 2 - 1 Original Alignment gcATTGGTTTTAGCCATGGAAATGTATGGAAAGCCACAAGGGTCTTCACAATCAATACCTTGAGGAACTTGGGCATGGGAAAAAGGACCATTGAGAACAAAGTGCAAGAGGAAGCACAGTGGCTCATGAAGGAACTGAAGAAAACAAATg ttgtgccctgtcatgctcctggtataacttgctccggccttctgtctcaggcATTGGTTTCAGTCATGGAAATGTCTGGAAAGCCACAAGGGTTTTTGTGATTAACTCTTTAAGGAACTTGGGTATGGGGAAAAGACCCATTGAAAACAAAGTACAAGAGGAGGCACAGTGGCTGATGAAGGAACTAAAGAAAACTAATggtgatgtggcagtaagcttgccctctatatgttaactctttctacatgag Alignment from CESAR gcATTGGTTTTAGCCATGGAAATGTATGGAAAGCCACAAGGGTCTTCACAATCAATACCTTGAGGAACTTGGGCATGGGAAAAAGGACCATTGAGAACAAAGTGCAAGAGGAAGCACAGTGGCTCATGAAGGAACTGAAGAAAACAAATg ttgtgccctgtcatgctcctggtataacttgctccggccttctgtctcaggcATTGGTTTCAGTCATGGAAATGTCTGGAAAGCCACAAGGGTTTTTGTGATTAACTCTTTAAGGAACTTGGGTATGGGGAAAAGACCCATTGAAAACAAAGTACAAGAGGAGGCACAGTGGCTGATGAAGGAACTAAAGAAAACTAATggtgatgtggcagtaagcttgccctctatatgttaactctttctacatgag Alignment from Spaln_aa2Genome GCATTGGTTTTAGCCATGGAAATGTATGGAAAGCCACAAGGGTCTTCACAATCAATACCTTGAGGAACTTGGGCATGGGAAAAAGGACCATTGAGAACAAAGTGCAAGAGGAAGCACAGTGGCTCATGAAGGAACTGAAGAAAACAAATG ttgtgccctgtcatgctcctggtataacttgctccggccttctgtctcagGCATTGGTTTCAGTCATGGAAATGTCTGGAAAGCCACAAGGGTTTTTGTGATTAACTCTTTAAGGAACTTGGGTATGGGGAAAAGACCCATTGAAAACAAAGTACAAGAGGAGGCACAGTGGCTGATGAAGGAACTAAAGAAAACTAATGgtgatgtggcagtaagcttgccctctatatgttaactctttctacatgag Alignment from Spaln_nt2Genome GCATTGGTTTTAGCCATGGAAATGTATGGAAAGCCACAAGGGTCTTCACAATCAATACCTTGAGGAACTTGGGCATGGGAAAAAGGACCATTGAGAACAAAGTGCAAGAGGAAGCACAGTGGCTCATGAAGGAACTGAAGAAAACAAATG ttgtgccctgtcatgctcctggtataacttgctccggccttctgtctcagGCATTGGTTTCAGTCATGGAAATGTCTGGAAAGCCACAAGGGTTTTTGTGATTAACTCTTTAAGGAACTTGGGTATGGGGAAAAGACCCATTGAAAACAAAGTACAAGAGGAGGCACAGTGGCTGATGAAGGAACTAAAGAAAACTAATGgtgatgtggcagtaagcttgccctctatatgttaactctttctacatgag Alignment from Pairagon GCATTGGTTTTAGCCATGGAAATGTATGGAAAGCCACAAGGGTCTTCACAATCAATACCTTGAGGAACTTGGGCATGGGAAAAAGGACCATTGAGAACAAAGTGCAAGAGGAAGCACAGTGGCTCATGAAGGAACTGAAGAAAACAAATG ttgtgccctgtcatgctcctggtataacttgctccggccttctgtctcagGCATTGGTTTCAGTCATGGAAATGTCTGGAAAGCCACAAGGGTTTTTGTGATTAACTCTTTAAGGAACTTGGGTATGGGGAAAAGACCCATTGAAAACAAAGTACAAGAGGAGGCACAGTGGCTGATGAAGGAACTAAAGAAAACTAATGgtgatgtggcagtaagcttgccctctatatgttaactctttctacatgag Alignment from Exonerate_protein2genome GCATTGGTTTTAGCCATGGAAATGTATGGAAAGCCACAAGGGTCTTCACAATCAATACCTTGAGGAACTTGGGCATGGGAAAAAGGACCATTGAGAACAAAGTGCAAGAGGAAGCACAGTGGCTCATGAAGGAACTGAAGAAAACAAATG ttgtgccctgtcatgctcctggtataacttgctccggccttctgtctcagGCATTGGTTTCAGTCATGGAAATGTCTGGAAAGCCACAAGGGTTTTTGTGATTAACTCTTTAAGGAACTTGGGTATGGGGAAAAGACCCATTGAAAACAAAGTACAAGAGGAGGCACAGTGGCTGATGAAGGAACTAAAGAAAACTAATGgtgatgtggcagtaagcttgccctctatatgttaactctttctacatgag Alignment from Exonerate_coding2genome GCATTGGTTTTAGCCATGGAAATGTATGGAAAGCCACAAGGGTCTTCACAATCAATACCTTGAGGAACTTGGGCATGGGAAAAAGGACCATTGAGAACAAAGTGCAAGAGGAAGCACAGTGGCTCATGAAGGAACTGAAGAAAACAAATG ttgtgccctgtcatgctcctggtataacttgctccggccttctgtctcagGCATTGGTTTCAGTCATGGAAATGTCTGGAAAGCCACAAGGGTTTTTGTGATTAACTCTTTAAGGAACTTGGGTATGGGGAAAAGACCCATTGAAAACAAAGTACAAGAGGAGGCACAGTGGCTGATGAAGGAACTAAAGAAAACTAATGgtgatgtggcagtaagcttgccctctatatgttaactctttctacatgag Alignment from GeneWise GCATTGGTTTTAGCCATGGAAATGTATGGAAAGCCACAAGGGTCTTCACAATCAATACCTTGAGGAACTTGGGCATGGGAAAAAGGACCATTGAGAACAAAGTGCAAGAGGAAGCACAGTGGCTCATGAAGGAACTGAAGAAAACAAATG ttgtgccctgtcatgctcctggtataacttgctccggccttctgtctcagGCATTGGTTTCAGTCATGGAAATGTCTGGAAAGCCACAAGGGTTTTTGTGATTAACTCTTTAAGGAACTTGGGTATGGGGAAAAGACCCATTGAAAACAAAGTACAAGAGGAGGCACAGTGGCTGATGAAGGAACTAAAGAAAACTAATGgtgatgtggcagtaagcttgccctctatatgttaactctttctacatgag #### D19Bwg1357e_ID5842_10 --> 0 - 0 Original Alignment GAACTAATTGAAGCCATCCGGGAAGCAGTGGTGTACCTGGCCCACACACACGATGGCGCCAGAGTGGCCATGCACTGCCTGTGGCACGGCACACCCAAG atactgtcagaggttaggcctcataactccccttctcttctcacctccagGAGCTAGTCGAAGCCATCCAAGAAGCAGTGGTGCATTTGGCGCACTTGCATGATGGAGTGAGAGTAGCAATGCATTGCCTGTGGCATGGCACACCCAAAgtgaggatcagtaccaagtctttcctgacattgtgatgaggtagcatcct Alignment from CESAR GAACTAATTGAAGCCATCCGGGAAGCAGTGGTGTACCTGGCCCACACACACGATGGCGCCAGAGTGGCCATGCACTGCCTGTGGCACGGCACACCCAAG atactgtcagaggttaggcctcataactccccttctcttctcacctccagGAGCTAGTCGAAGCCATCCAAGAAGCAGTGGTGCATTTGGCGCACTTGCATGATGGAGTGAGAGTAGCAATGCATTGCCTGTGGCATGGCACACCCAAAgtgaggatcagtaccaagtctttcctgacattgtgatgaggtagcatcct Alignment from Spaln_aa2Genome GAACTAATTGAAGCCATCCGGGAAGCAGTGGTGTACCTGGCCCACACACACGATGGCGCCAGAGTGGCCATGCACTGCCTGTGGCACGGCACACCCAAG atactgtcagaggttaggcctcataactccccttctcttctcacctccagGAGCTAGTCGAAGCCATCCAAGAAGCAGTGGTGCATTTGGCGCACTTGCATGATGGAGTGAGAGTAGCAATGCATTGCCTGTGGCATGGCACACCCAAAgtgaggatcagtaccaagtctttcctgacattgtgatgaggtagcatcct Alignment from Spaln_nt2Genome GAACTAATTGAAGCCATCCGGGAAGCAGTGGTGTACCTGGCCCACACACACGATGGCGCCAGAGTGGCCATGCACTGCCTGTGGCACGGCACACCCAAG atactgtcagaggttaggcctcataactccccttctcttctcacctccagGAGCTAGTCGAAGCCATCCAAGAAGCAGTGGTGCATTTGGCGCACTTGCATGATGGAGTGAGAGTAGCAATGCATTGCCTGTGGCATGGCACACCCAAAgtgaggatcagtaccaagtctttcctgacattgtgatgaggtagcatcct Alignment from Pairagon GAACTAATTGAAGCCATCCGGGAAGCAGTGGTGTACCTGGCCCACACACACGATGGCGCCAGAGTGGCCATGCACTGCCTGTGGCACGGCACACCCAAG atactgtcagaggttaggcctcataactccccttctcttctcacctccagGAGCTAGTCGAAGCCATCCAAGAAGCAGTGGTGCATTTGGCGCACTTGCATGATGGAGTGAGAGTAGCAATGCATTGCCTGTGGCATGGCACACCCAAAgtgaggatcagtaccaagtctttcctgacattgtgatgaggtagcatcct Alignment from Exonerate_protein2genome GAACTAATTGAAGCCATCCGGGAAGCAGTGGTGTACCTGGCCCACACACACGATGGCGCCAGAGTGGCCATGCACTGCCTGTGGCACGGCACACCCAAG atactgtcagaggttaggcctcataactccccttctcttctcacctccagGAGCTAGTCGAAGCCATCCAAGAAGCAGTGGTGCATTTGGCGCACTTGCATGATGGAGTGAGAGTAGCAATGCATTGCCTGTGGCATGGCACACCCAAAgtgaggatcagtaccaagtctttcctgacattgtgatgaggtagcatcct Alignment from Exonerate_coding2genome GAACTAATTGAAGCCATCCGGGAAGCAGTGGTGTACCTGGCCCACACACACGATGGCGCCAGAGTGGCCATGCACTGCCTGTGGCACGGCACACCCAAG atactgtcagaggttaggcctcataactccccttctcttctcacctccagGAGCTAGTCGAAGCCATCCAAGAAGCAGTGGTGCATTTGGCGCACTTGCATGATGGAGTGAGAGTAGCAATGCATTGCCTGTGGCATGGCACACCCAAAgtgaggatcagtaccaagtctttcctgacattgtgatgaggtagcatcct Alignment from GeneWise GAACTAATTGAAGCCATCCGGGAAGCAGTGGTGTACCTGGCCCACACACACGATGGCGCCAGAGTGGCCATGCACTGCCTGTGGCACGGCACACCCAAG atactgtcagaggttaggcctcataactccccttctcttctcacctccagGAGCTAGTCGAAGCCATCCAAGAAGCAGTGGTGCATTTGGCGCACTTGCATGATGGAGTGAGAGTAGCAATGCATTGCCTGTGGCATGGCACACCCAAAgtgaggatcagtaccaagtctttcctgacattgtgatgaggtagcatcct #### D19Bwg1357e_ID5846_6 --> 2 - 2 Original Alignment gcGACTTGGTTGAATTAAGTAAAGCCAAATATTCCAGGAATATCGTTAAGAAATTTCTCATGTATgg tatgtttccccgcccagcggtgattaggaagaatttttgtgttcttttaggtGACTTAGTGGAGTTAAGCAGAGCAAAACATACCCAGAATATTGTTAAGAAATTTATTACATATgggtaagtgcaggattgtgtattgaggtttccctaaaatgataagttgaata Alignment from CESAR gcGACTTGGTTGAATTAAGTAAAGCCAAATATTCCAGGAATATCGTTAAGAAATTTCTCATGTATgg tatgtttccccgcccagcggtgattaggaagaatttttgtgttcttttaggtGACTTAGTGGAGTTAAGCAGAGCAAAACATACCCAGAATATTGTTAAGAAATTTATTACATATgggtaagtgcaggattgtgtattgaggtttccctaaaatgataagttgaata Alignment from Spaln_aa2Genome GCGACTTGGTTGAATTAAGTAAAGCCAAATATTCCAGGAATATCGTTAAGAAATTTCTCATGTATGG tatgtttccccgcccagcggtgattaggaagaatttttgtgttcttttagGTGACTTAGTGGAGTTAAGCAGAGCAAAACATACCCAGAATATTGTTAAGAAATTTATTACATATGGgtaagtgcaggattgtgtattgaggtttccctaaaatgataagttgaata Alignment from Spaln_nt2Genome GCGACTTGGTTGAATTAAGTAAAGCCAAATATTCCAGGAATATCGTTAAGAAATTTCTCATGTATGG tatgtttccccgcccagcggtgattaggaagaatttttgtgttcttttagGTGACTTAGTGGAGTTAAGCAGAGCAAAACATACCCAGAATATTGTTAAGAAATTTATTACATATGGgtaagtgcaggattgtgtattgaggtttccctaaaatgataagttgaata Alignment from Pairagon GCGACTTGGTTGAATTAAGTAAAGCCAAATATTCCAGGAATATCGTTAAGAAATTTCTCATGTATGG tatgtttccccgcccagcggtgattaggaagaatttttgtgttcttttagGTGACTTAGTGGAGTTAAGCAGAGCAAAACATACCCAGAATATTGTTAAGAAATTTATTACATATGGgtaagtgcaggattgtgtattgaggtttccctaaaatgataagttgaata Alignment from Exonerate_protein2genome GCGACTTGGTTGAATTAAGTAAAGCCAAATATTCCAGGAATATCGTTAAGAAATTTCTCATGTATGG tatgtttccccgcccagcggtgattaggaagaatttttgtgttcttttagGTGACTTAGTGGAGTTAAGCAGAGCAAAACATACCCAGAATATTGTTAAGAAATTTATTACATATGGgtaagtgcaggattgtgtattgaggtttccctaaaatgataagttgaata Alignment from Exonerate_coding2genome GCGACTTGGTTGAATTAAGTAAAGCCAAATATTCCAGGAATATCGTTAAGAAATTTCTCATGTATGG tatgtttccccgcccagcggtgattaggaagaatttttgtgttcttttagGTGACTTAGTGGAGTTAAGCAGAGCAAAACATACCCAGAATATTGTTAAGAAATTTATTACATATGGgtaagtgcaggattgtgtattgaggtttccctaaaatgataagttgaata Alignment from GeneWise GCGACTTGGTTGAATTAAGTAAAGCCAAATATTCCAGGAATATCGTTAAGAAATTTCTCATGTATGG tatgtttccccgcccagcggtgattaggaagaatttttgtgttcttttagGTGACTTAGTGGAGTTAAGCAGAGCAAAACATACCCAGAATATTGTTAAGAAATTTATTACATATGGgtaagtgcaggattgtgtattgaggtttccctaaaatgataagttgaata #### Dagla_ID2755_15 --> 1 - 0 Original Alignment gATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaacaaagatgttggcaaagaaggaaacagcgttgtcttacccacactaggGTTGGCCTTTCCCAACTAGAAGGATTCTGCCGGCAGCTTTTAGATGTCTTGCAACGAAGTACTAAACCCAAGgtgagtactgttcagagctacagcaccaaaaaagccctgtgactctcatg Alignment from CESAR gATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaacaaagatgttggcaaagaaggaaacagcgttgtcttacccacactaggGTTGGCCTTTCCCAACTAGAAGGATTCTGCCGGCAGCTTTTAGATGTCTTGCAACGAAGTACTAAACCCAAGgtgagtactgttcagagctacagcaccaaaaaagccctgtgactctcatg Alignment from Spaln_aa2Genome GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaacaaagatgttggcaaagaaggaaacagcgttgtcttacccacactagGGTTGGCCTTTCCCAACTAGAAGGATTCTGCCGGCAGCTTTTAGATGTCTTGCAACGAAGTACTAAACCCAAGgtgagtactgttcagagctacagcaccaaaaaagccctgtgactctcatg Alignment from Spaln_nt2Genome GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaacaaagatgttggcaaagaaggaaacagcgttgtcttacccacactagGGTTGGCCTTTCCCAACTAGAAGGATTCTGCCGGCAGCTTTTAGATGTCTTGCAACGAAGTACTAAACCCAAGgtgagtactgttcagagctacagcaccaaaaaagccctgtgactctcatg Alignment from Pairagon GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaacaaagatgttggcaaagaaggaaacagcgttgtcttacccacactagGGTTGGCCTTTCCCAACTAGAAGGATTCTGCCGGCAGCTTTTAGATGTCTTGCAACGAAGTACTAAACCCAAGgtgagtactgttcagagctacagcaccaaaaaagccctgtgactctcatg Alignment from Exonerate_protein2genome GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaacaaagatgttggcaaagaaggaaacagcgttgtcttacccacactagGGTTGGCCTTTCCCAACTAGAAGGATTCTGCCGGCAGCTTTTAGATGTCTTGCAACGAAGTACTAAACCCAAGgtgagtactgttcagagctacagcaccaaaaaagccctgtgactctcatg Alignment from Exonerate_coding2genome GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaacaaagatgttggcaaagaaggaaacagcgttgtcttacccacactagGGTTGGCCTTTCCCAACTAGAAGGATTCTGCCGGCAGCTTTTAGATGTCTTGCAACGAAGTACTAAACCCAAGgtgagtactgttcagagctacagcaccaaaaaagccctgtgactctcatg Alignment from GeneWise GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaacaaagatgttggcaaagaaggaaacagcgttgtcttacccacactagGGTTGGCCTTTCCCAACTAGAAGGATTCTGCCGGCAGCTTTTAGATGTCTTGCAACGAAGTACTAAACCCAAGgtgagtactgttcagagctacagcaccaaaaaagccctgtgactctcatg #### Dagla_ID2758_12 --> 0 - 0 Original Alignment GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacaattgctctgatgttgaaggtctatccttccttttcctttctccagGACATGGTACTGGCAGCTGAGTACATTAAGAAGAAGCTGGAACAGGAGATGGTCTTGTCCCAGGCTTTTGGGCGAGACCTGgtgagttttgatttgaactattctcaaacctgcactaacctgtaccaatg Alignment from CESAR GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacaattgctctgatgttgaaggtctatccttccttttcctttctccagGACATGGTACTGGCAGCTGAGTACATTAAGAAGAAGCTGGAACAGGAGATGGTCTTGTCCCAGGCTTTTGGGCGAGACCTGgtgagttttgatttgaactattctcaaacctgcactaacctgtaccaatg Alignment from Spaln_aa2Genome GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacaattgctctgatgttgaaggtctatccttccttttcctttctccagGACATGGTACTGGCAGCTGAGTACATTAAGAAGAAGCTGGAACAGGAGATGGTCTTGTCCCAGGCTTTTGGGCGAGACCTGgtgagttttgatttgaactattctcaaacctgcactaacctgtaccaatg Alignment from Spaln_nt2Genome GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacaattgctctgatgttgaaggtctatccttccttttcctttctccagGACATGGTACTGGCAGCTGAGTACATTAAGAAGAAGCTGGAACAGGAGATGGTCTTGTCCCAGGCTTTTGGGCGAGACCTGgtgagttttgatttgaactattctcaaacctgcactaacctgtaccaatg Alignment from Pairagon GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacaattgctctgatgttgaaggtctatccttccttttcctttctccagGACATGGTACTGGCAGCTGAGTACATTAAGAAGAAGCTGGAACAGGAGATGGTCTTGTCCCAGGCTTTTGGGCGAGACCTGgtgagttttgatttgaactattctcaaacctgcactaacctgtaccaatg Alignment from Exonerate_protein2genome GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacaattgctctgatgttgaaggtctatccttccttttcctttctccagGACATGGTACTGGCAGCTGAGTACATTAAGAAGAAGCTGGAACAGGAGATGGTCTTGTCCCAGGCTTTTGGGCGAGACCTGgtgagttttgatttgaactattctcaaacctgcactaacctgtaccaatg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacaattgctctgatgttgaaggtctatccttccttttcctttctccagGACATGGTACTGGCAGCTGAGTACATTAAGAAGAAGCTGGAACAGGAGATGGTCTTGTCCCAGGCTTTTGGGCGAGACCTGgtgagttttgatttgaactattctcaaacctgcactaacctgtaccaatg #### Dagla_ID2760_10 --> 0 - 0 Original Alignment GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ttgcttatcagctttccaaagtgccttcctttctttctttttaaacaaagGTCTATGAAACTCCCTTTTATGTTGCTGTTGACCATGATAAGAAGAAAGTGGTGGTCAGCATCAGGGGTACTTTATCCCCGAAAgtgcgcgctattgtatccgaatttacactctacttttgttacactaccac Alignment from CESAR GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ttgcttatcagctttccaaagtgccttcctttctttctttttaaacaaagGTCTATGAAACTCCCTTTTATGTTGCTGTTGACCATGATAAGAAGAAAGTGGTGGTCAGCATCAGGGGTACTTTATCCCCGAAAgtgcgcgctattgtatccgaatttacactctacttttgttacactaccac Alignment from Spaln_aa2Genome GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ttgcttatcagctttccaaagtgccttcctttctttctttttaaacaaagGTCTATGAAACTCCCTTTTATGTTGCTGTTGACCATGATAAGAAGAAAGTGGTGGTCAGCATCAGGGGTACTTTATCCCCGAAAgtgcgcgctattgtatccgaatttacactctacttttgttacactaccac Alignment from Spaln_nt2Genome GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ttgcttatcagctttccaaagtgccttcctttctttctttttaaacaaagGTCTATGAAACTCCCTTTTATGTTGCTGTTGACCATGATAAGAAGAAAGTGGTGGTCAGCATCAGGGGTACTTTATCCCCGAAAgtgcgcgctattgtatccgaatttacactctacttttgttacactaccac Alignment from Pairagon GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ttgcttatcagctttccaaagtgccttcctttctttctttttaaacaaagGTCTATGAAACTCCCTTTTATGTTGCTGTTGACCATGATAAGAAGAAAGTGGTGGTCAGCATCAGGGGTACTTTATCCCCGAAAgtgcgcgctattgtatccgaatttacactctacttttgttacactaccac Alignment from Exonerate_protein2genome GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ttgcttatcagctttccaaagtgccttcctttctttctttttaaacaaagGTCTATGAAACTCCCTTTTATGTTGCTGTTGACCATGATAAGAAGAAAGTGGTGGTCAGCATCAGGGGTACTTTATCCCCGAAAgtgcgcgctattgtatccgaatttacactctacttttgttacactaccac Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ttgcttatcagctttccaaagtgccttcctttctttctttttaaacaaagGTCTATGAAACTCCCTTTTATGTTGCTGTTGACCATGATAAGAAGAAAGTGGTGGTCAGCATCAGGGGTACTTTATCCCCGAAAgtgcgcgctattgtatccgaatttacactctacttttgttacactaccac #### Dagla_ID2765_6 --> 0 - 0 Original Alignment GATGCCTACTCAGAAATCGCCTACCTCTTTGCTGAATTTTTCCGTGACCTCGACATCGTGCCCTCCGACATCATTGCTGGCCTGGTGCTGCTTAGACAGCGGCAGCGAGCCAAACGCAATGCGGTGCTGGACGAG gaactctatcaaaccatccatcagtactctctgttttattttttttccagGATGCTTACACAGAAATTGCTTACATCTTTGCAGAACTTTCTCGTGACCTTGACATTGTACCATCCGACATCATCGCTGGTCTAGTGTTGCTTAGGCAGCGGCAGCGTGCCAGAAGCAATGCAGTGCTGGACAAGgtaggcgtctgagtcacggtctttaatatccagaaccaacggcatacccc Alignment from CESAR GATGCCTACTCAGAAATCGCCTACCTCTTTGCTGAATTTTTCCGTGACCTCGACATCGTGCCCTCCGACATCATTGCTGGCCTGGTGCTGCTTAGACAGCGGCAGCGAGCCAAACGCAATGCGGTGCTGGACGAG gaactctatcaaaccatccatcagtactctctgttttattttttttccagGATGCTTACACAGAAATTGCTTACATCTTTGCAGAACTTTCTCGTGACCTTGACATTGTACCATCCGACATCATCGCTGGTCTAGTGTTGCTTAGGCAGCGGCAGCGTGCCAGAAGCAATGCAGTGCTGGACAAGgtaggcgtctgagtcacggtctttaatatccagaaccaacggcatacccc Alignment from Spaln_aa2Genome GATGCCTACTCAGAAATCGCCTACCTCTTTGCTGAATTTTTCCGTGACCTCGACATCGTGCCCTCCGACATCATTGCTGGCCTGGTGCTGCTTAGACAGCGGCAGCGAGCCAAACGCAATGCGGTGCTGGACGAG gaactctatcaaaccatccatcagtactctctgttttattttttttccagGATGCTTACACAGAAATTGCTTACATCTTTGCAGAACTTTCTCGTGACCTTGACATTGTACCATCCGACATCATCGCTGGTCTAGTGTTGCTTAGGCAGCGGCAGCGTGCCAGAAGCAATGCAGTGCTGGACAAGgtaggcgtctgagtcacggtctttaatatccagaaccaacggcatacccc Alignment from Spaln_nt2Genome GATGCCTACTCAGAAATCGCCTACCTCTTTGCTGAATTTTTCCGTGACCTCGACATCGTGCCCTCCGACATCATTGCTGGCCTGGTGCTGCTTAGACAGCGGCAGCGAGCCAAACGCAATGCGGTGCTGGACGAG gaactctatcaaaccatccatcagtactctctgttttattttttttccagGATGCTTACACAGAAATTGCTTACATCTTTGCAGAACTTTCTCGTGACCTTGACATTGTACCATCCGACATCATCGCTGGTCTAGTGTTGCTTAGGCAGCGGCAGCGTGCCAGAAGCAATGCAGTGCTGGACAAGgtaggcgtctgagtcacggtctttaatatccagaaccaacggcatacccc Alignment from Pairagon GATGCCTACTCAGAAATCGCCTACCTCTTTGCTGAATTTTTCCGTGACCTCGACATCGTGCCCTCCGACATCATTGCTGGCCTGGTGCTGCTTAGACAGCGGCAGCGAGCCAAACGCAATGCGGTGCTGGACGAG gaactctatcaaaccatccatcagtactctctgttttattttttttccagGATGCTTACACAGAAATTGCTTACATCTTTGCAGAACTTTCTCGTGACCTTGACATTGTACCATCCGACATCATCGCTGGTCTAGTGTTGCTTAGGCAGCGGCAGCGTGCCAGAAGCAATGCAGTGCTGGACAAGgtaggcgtctgagtcacggtctttaatatccagaaccaacggcatacccc Alignment from Exonerate_protein2genome GATGCCTACTCAGAAATCGCCTACCTCTTTGCTGAATTTTTCCGTGACCTCGACATCGTGCCCTCCGACATCATTGCTGGCCTGGTGCTGCTTAGACAGCGGCAGCGAGCCAAACGCAATGCGGTGCTGGACGAG gaactctatcaaaccatccatcagtactctctgttttattttttttccagGATGCTTACACAGAAATTGCTTACATCTTTGCAGAACTTTCTCGTGACCTTGACATTGTACCATCCGACATCATCGCTGGTCTAGTGTTGCTTAGGCAGCGGCAGCGTGCCAGAAGCAATGCAGTGCTGGACAAGgtaggcgtctgagtcacggtctttaatatccagaaccaacggcatacccc Alignment from Exonerate_coding2genome gaactctatcaaaccatccatcagtactctctgttttattttttttccaggatgcttacacagaaattgcttacatctttgcagaactttctcgtgaccttgacattgtaccatccgacatcatcgctggtctagtgttgcttaggcagcggcagcgtgccagaagcaatgcagtgctggacaaggtaggcgtctgagtcacggtctttaatatccagaaccaacggcatacccc Alignment from GeneWise GATGCCTACTCAGAAATCGCCTACCTCTTTGCTGAATTTTTCCGTGACCTCGACATCGTGCCCTCCGACATCATTGCTGGCCTGGTGCTGCTTAGACAGCGGCAGCGAGCCAAACGCAATGCGGTGCTGGACGAG gaactctatcaaaccatccatcagtactctctgttttattttttttccagGATGCTTACACAGAAATTGCTTACATCTTTGCAGAACTTTCTCGTGACCTTGACATTGTACCATCCGACATCATCGCTGGTCTAGTGTTGCTTAGGCAGCGGCAGCGTGCCAGAAGCAATGCAGTGCTGGACAAGgtaggcgtctgagtcacggtctttaatatccagaaccaacggcatacccc #### Dak_ID2905_8 --> 0 - 1 Original Alignment ATAGCACCTGTTGATCAGATTGTCACTCTTATGCTTGACCACATGACAAACACCTCCAATATATTTCATGTGCCTGTACGGTCAg gaatggatagtaactggagagaggctgtgtgactgtttctctctgcctagATAGCACCTGTTGATCAGATAGTTACTCTTATGCTGGACCACATGACAAACACCTCTAACATATTTCATGTCCCCGTTCGGTCAggtaagccactgacttagacatggtttgtaatttggaggcctaagaaatcc Alignment from CESAR ATAGCACCTGTTGATCAGATTGTCACTCTTATGCTTGACCACATGACAAACACCTCCAATATATTTCATGTGCCTGTACGGTCAg gaatggatagtaactggagagaggctgtgtgactgtttctctctgcctagATAGCACCTGTTGATCAGATAGTTACTCTTATGCTGGACCACATGACAAACACCTCTAACATATTTCATGTCCCCGTTCGGTCAggtaagccactgacttagacatggtttgtaatttggaggcctaagaaatcc Alignment from Spaln_aa2Genome ATAGCACCTGTTGATCAGATTGTCACTCTTATGCTTGACCACATGACAAACACCTCCAATATATTTCATGTGCCTGTACGGTCAG gaatggatagtaactggagagaggctgtgtgactgtttctctctgcctagATAGCACCTGTTGATCAGATAGTTACTCTTATGCTGGACCACATGACAAACACCTCTAACATATTTCATGTCCCCGTTCGGTCAGgtaagccactgacttagacatggtttgtaatttggaggcctaagaaatcc Alignment from Spaln_nt2Genome ATAGCACCTGTTGATCAGATTGTCACTCTTATGCTTGACCACATGACAAACACCTCCAATATATTTCATGTGCCTGTACGGTCAG gaatggatagtaactggagagaggctgtgtgactgtttctctctgcctagATAGCACCTGTTGATCAGATAGTTACTCTTATGCTGGACCACATGACAAACACCTCTAACATATTTCATGTCCCCGTTCGGTCAGgtaagccactgacttagacatggtttgtaatttggaggcctaagaaatcc Alignment from Pairagon ATAGCACCTGTTGATCAGATTGTCACTCTTATGCTTGACCACATGACAAACACCTCCAATATATTTCATGTGCCTGTACGGTCAG gaatggatagtaactggagagaggctgtgtgactgtttctctctgcctagATAGCACCTGTTGATCAGATAGTTACTCTTATGCTGGACCACATGACAAACACCTCTAACATATTTCATGTCCCCGTTCGGTCAGgtaagccactgacttagacatggtttgtaatttggaggcctaagaaatcc Alignment from Exonerate_protein2genome ATAGCACCTGTTGATCAGATTGTCACTCTTATGCTTGACCACATGACAAACACCTCCAATATATTTCATGTGCCTGTACGGTCAG gaatggatagtaactggagagaggctgtgtgactgtttctctctgcctagATAGCACCTGTTGATCAGATAGTTACTCTTATGCTGGACCACATGACAAACACCTCTAACATATTTCATGTCCCCGTTCGGTCAGgtaagccactgacttagacatggtttgtaatttggaggcctaagaaatcc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATAGCACCTGTTGATCAGATTGTCACTCTTATGCTTGACCACATGACAAACACCTCCAATATATTTCATGTGCCTGTACGGTCAG gaatggatagtaactggagagaggctgtgtgactgtttctctctgcctagATAGCACCTGTTGATCAGATAGTTACTCTTATGCTGGACCACATGACAAACACCTCTAACATATTTCATGTCCCCGTTCGGTCAGgtaagccactgacttagacatggtttgtaatttggaggcctaagaaatcc #### Dak_ID2908_5 --> 0 - 1 Original Alignment GTGGCAGGTGCTCTGGCTGAGGAAGGAATGGGGCTGGAGGAGATCACAAAGAGGGTGAGCGTGATCGCCAAGACCATGg ctctttgtttatctaagtgcagctatggccagcaccctggtattctgcagGTTACAGGTGCTTTAGCAGAGGATGGTATGGGGCTGGAGGAGATCACAAAGAGGGTCAGTGTCATTGCTAAGACTATGggtaagttcaatgagtataaagctacagcaatggaccatgtagcgggctga Alignment from CESAR GTGGCAGGTGCTCTGGCTGAGGAAGGAATGGGGCTGGAGGAGATCACAAAGAGGGTGAGCGTGATCGCCAAGACCATGg ctctttgtttatctaagtgcagctatggccagcaccctggtattctgcagGTTACAGGTGCTTTAGCAGAGGATGGTATGGGGCTGGAGGAGATCACAAAGAGGGTCAGTGTCATTGCTAAGACTATGggtaagttcaatgagtataaagctacagcaatggaccatgtagcgggctga Alignment from Spaln_aa2Genome GTGGCAGGTGCTCTGGCTGAGGAAGGAATGGGGCTGGAGGAGATCACAAAGAGGGTGAGCGTGATCGCCAAGACCATGG ctctttgtttatctaagtgcagctatggccagcaccctggtattctgcagGTTACAGGTGCTTTAGCAGAGGATGGTATGGGGCTGGAGGAGATCACAAAGAGGGTCAGTGTCATTGCTAAGACTATGGgtaagttcaatgagtataaagctacagcaatggaccatgtagcgggctga Alignment from Spaln_nt2Genome GTGGCAGGTGCTCTGGCTGAGGAAGGAATGGGGCTGGAGGAGATCACAAAGAGGGTGAGCGTGATCGCCAAGACCATGG ctctttgtttatctaagtgcagctatggccagcaccctggtattctgcagGTTACAGGTGCTTTAGCAGAGGATGGTATGGGGCTGGAGGAGATCACAAAGAGGGTCAGTGTCATTGCTAAGACTATGGgtaagttcaatgagtataaagctacagcaatggaccatgtagcgggctga Alignment from Pairagon GTGGCAGGTGCTCTGGCTGAGGAAGGAATGGGGCTGGAGGAGATCACAAAGAGGGTGAGCGTGATCGCCAAGACCATGG ctctttgtttatctaagtgcagctatggccagcaccctggtattctgcagGTTACAGGTGCTTTAGCAGAGGATGGTATGGGGCTGGAGGAGATCACAAAGAGGGTCAGTGTCATTGCTAAGACTATGGgtaagttcaatgagtataaagctacagcaatggaccatgtagcgggctga Alignment from Exonerate_protein2genome GTGGCAGGTGCTCTGGCTGAGGAAGGAATGGGGCTGGAGGAGATCACAAAGAGGGTGAGCGTGATCGCCAAGACCATGG ctctttgtttatctaagtgcagctatggccagcaccctggtattctgcagGTTACAGGTGCTTTAGCAGAGGATGGTATGGGGCTGGAGGAGATCACAAAGAGGGTCAGTGTCATTGCTAAGACTATGGgtaagttcaatgagtataaagctacagcaatggaccatgtagcgggctga Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGGCAGGTGCTCTGGCTGAGGAAGGAATGGGGCTGGAGGAGATCACAAAGAGGGTGAGCGTGATCGCCAAGACCATGG ctctttgtttatctaagtgcagctatggccagcaccctggtattctgcagGTTACAGGTGCTTTAGCAGAGGATGGTATGGGGCTGGAGGAGATCACAAAGAGGGTCAGTGTCATTGCTAAGACTATGGgtaagttcaatgagtataaagctacagcaatggaccatgtagcgggctga #### Dak_ID2910_3 --> 2 - 1 Original Alignment gtTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAg tgcagctttgggaccactatgcatacctctgtcttctatccttttataaggcTTTATTGGCAAAGGG---CTAACAGGTATTATTGTAGGGTTGGTGTTTGCCTCTCCTCCTGTGGGCAGCATCTTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACAggtaagatgtgtaccagactggataggttgtggaggggagcacattgaatc Alignment from CESAR gtTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAg tgcagctttgggaccactatgcatacctctgtcttctatccttttataaggcTTTATTGGCAAAGGG---CTAACAGGTATTATTGTAGGGTTGGTGTTTGCCTCTCCTCCTGTGGGCAGCATCTTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACAggtaagatgtgtaccagactggataggttgtggaggggagcacattgattg Alignment from Spaln_aa2Genome GTTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAG tgcagctttgggaccactatgcatacctctgtcttctatccttttataagGCTTTATTGGCAAAGGG---CTAACAGGTATTATTGTAGGGTTGGTGTTTGCCTCTCCTCCTGTGGGCAGCATCTTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACAGgtaagatgtgtaccagactggataggttgtggaggggagcacattgaatc Alignment from Spaln_nt2Genome GTTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAG tgcagctttgggaccactatgcatacctctgtcttctatccttttataagGCTTTATTGGCAAAGG---GCTAACAGGTATTATTGTAGGGTTGGTGTTTGCCTCTCCTCCTGTGGGCAGCATCTTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACAGgtaagatgtgtaccagactggataggttgtggaggggagcacattgaatc Alignment from Pairagon GTTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAG tgcagctttgggaccactatgcatacctctgtcttctatccttttataagGCTTTATTGGCAAAGG---GCTAACAGGTATTATTGTAGGGTTGGTGTTTGCCTCTCCTCCTGTGGGCAGCATCTTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACAGgtaagatgtgtaccagactggataggttgtggaggggagcacattgaatc Alignment from Exonerate_protein2genome GTTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAG tgcagctttgggaccactatgcatacctctgtcttctatccttttataagGCTTTATTGGCAAAGGG---CTAACAGGTATTATTGTAGGGTTGGTGTTTGCCTCTCCTCCTGTGGGCAGCATCTTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACAGgtaagatgtgtaccagactggataggttgtggaggggagcacattgaatc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAG tgcagctttgggaccactatgcatacctctgtcttctatccttttataagGCTTTATTGGCAAAGGG---CTAACAGGTATTATTGTAGGGTTGGTGTTTGCCTCTCCTCCTGTGGGCAGCATCTTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACAGgtaagatgtgtaccagactggataggttgtggaggggagcacattgaatc #### Dclre1a_ID12119_8 --> 0 - 1 Original Alignment GGTTTGCAGAGCCATTTGAAGAAGTGTGGTGGGAAATACGATCAGATTTTGGCGTTCCGACCCACAGGATGGACACACTCTAACAACATAACTAGCACAGCGGATATTATTCCCCAGACAAGAGGAAATATATCGATATATg ggccaagttgataccagtgaacagagctggtcacccttagcttctcctagGGGTTGCAAAGCCATTCGAAAAAGTGTGGAGGGAAACATGATCCGGTTCTGGCATTCCGCCCCACAGGATGGACACACGCGAACAACATAACGAGTACTGTGGATATTATTCCCCAGACTAGAGGAAATATA---TTGTATggtaaattcagctaaaattttcattgtgtggtgactcagttgtcaatgata Alignment from CESAR GGTTTGCAGAGCCATTTGAAGAAGTGTGGTGGGAAATACGATCAGATTTTGGCGTTCCGACCCACAGGATGGACACACTCTAACAACATAACTAGCACAGCGGATATTATTCCCCAGACAAGAGGAAATATATCGATATATg ggccaagttgataccagtgaacagagctggtcacccttagcttctcctagGGGTTGCAAAGCCATTCGAAAAAGTGTGGAGGGAAACATGATCCGGTTCTGGCATTCCGCCCCACAGGATGGACACACGCGAACAACATAACGAGTACTGTGGATATTATTCCCCAGACTAGAGGAAATATA---TTGTATggtaaattcagctaaaattttcattgtgtggtgactcagttgtcaatgata Alignment from Spaln_aa2Genome GGTTTGCAGAGCCATTTGAAGAAGTGTGGTGGGAAATACGATCAGATTTTGGCGTTCCGACCCACAGGATGGACACACTCTAACAACATAACTAGCACAGCGGATATTATTCCCCAGACAAGAGGAAATATATCGATATATG ggccaagttgataccagtgaacagagctggtcacccttagcttctcctagGGGTTGCAAAGCCATTCGAAAAAGTGTGGAGGGAAACATGATCCGGTTCTGGCATTCCGCCCCACAGGATGGACACACGCGAACAACATAACGAGTACTGTGGATATTATTCCCCAGACTAGAGGAAATATA---TTGTATGgtaaattcagctaaaattttcattgtgtggtgactcagttgtcaatgata Alignment from Spaln_nt2Genome GGTTTGCAGAGCCATTTGAAGAAGTGTGGTGGGAAATACGATCAGATTTTGGCGTTCCGACCCACAGGATGGACACACTCTAACAACATAACTAGCACAGCGGATATTATTCCCCAGACAAGAGGAAATATATCGATATATG ggccaagttgataccagtgaacagagctggtcacccttagcttctcctagGGGTTGCAAAGCCATTCGAAAAAGTGTGGAGGGAAACATGATCCGGTTCTGGCATTCCGCCCCACAGGATGGACACACGCGAACAACATAACGAGTACTGTGGATATTATTCCCCAGACTAGAGGAAATATAT---TGTATGgtaaattcagctaaaattttcattgtgtggtgactcagttgtcaatgata Alignment from Pairagon GGTTTGCAGAGCCATTTGAAGAAGTGTGGTGGGAAATACGATCAGATTTTGGCGTTCCGACCCACAGGATGGACACACTCTAACAACATAACTAGCACAGCGGATATTATTCCCCAGACAAGAGGAAATATATCGATATATG ggccaagttgataccagtgaacagagctggtcacccttagcttctcctagGGGTTGCAAAGCCATTCGAAAAAGTGTGGAGGGAAACATGATCCGGTTCTGGCATTCCGCCCCACAGGATGGACACACGCGAACAACATAACGAGTACTGTGGATATTATTCCCCAGACTAGAGGAAATATATTG---TATGgtaaattcagctaaaattttcattgtgtggtgactcagttgtcaatgata Alignment from Exonerate_protein2genome GGTTTGCAGAGCCATTTGAAGAAGTGTGGTGGGAAATACGATCAGATTTTGGCGTTCCGACCCACAGGATGGACACACTCTAACAACATAACTAGCACAGCGGATATTATTCCCCAGACAAGAGGAAATATATCGATATATG ggccaagttgataccagtgaacagagctggtcacccttagcttctcctagGGGTTGCAAAGCCATTCGAAAAAGTGTGGAGGGAAACATGATCCGGTTCTGGCATTCCGCCCCACAGGATGGACACACGCGAACAACATAACGAGTACTGTGGATATTATTCCCCAGACTAGAGGAAATATA---TTGTATGgtaaattcagctaaaattttcattgtgtggtgactcagttgtcaatgata Alignment from Exonerate_coding2genome GGTTTGCAGAGCCATTTGAAGAAGTGTGGTGGGAAATACGATCAGATTTTGGCGTTCCGACCCACAGGATGGACACACTCTAACAACATAACTAGCACAGCGGATATTATTCCCCAGACAAGAGGAAATATATCGATATATG ggccaagttgataccagtgaacagagctggtcacccttagcttctcctagGGGTTGCAAAGCCATTCGAAAAAGTGTGGAGGGAAACATGATCCGGTTCTGGCATTCCGCCCCACAGGATGGACACACGCGAACAACATAACGAGTACTGTGGATATTATTCCCCAGACTAGAGGAAATATA---TTGTATGgtaaattcagctaaaattttcattgtgtggtgactcagttgtcaatgata Alignment from GeneWise GGTTTGCAGAGCCATTTGAAGAAGTGTGGTGGGAAATACGATCAGATTTTGGCGTTCCGACCCACAGGATGGACACACTCTAACAACATAACTAGCACAGCGGATATTATTCCCCAGACAAGAGGAAATATATCGATATATG ggccaagttgataccagtgaacagagctggtcacccttagcttctcctagGGGTTGCAAAGCCATTCGAAAAAGTGTGGAGGGAAACATGATCCGGTTCTGGCATTCCGCCCCACAGGATGGACACACGCGAACAACATAACGAGTACTGTGGATATTATTCCCCAGACTAGAGGAAATATA---TTGTATGgtaaattcagctaaaattttcattgtgtggtgactcagttgtcaatgata #### Dclre1a_ID12122_5 --> 1 - 2 Original Alignment cTGTCCAGGTGCTACCATGATCCTTTTCCAGCTTCCCAACGGTGCTGTCATACTGCACACCGGAGACTTCCGAGCGGACCCCAGCATGGAACGCTCTCGCCTGGCGGGCCGCAAAGTCCACACACTGTTCCTGGATACCac agctgcatttccaactacaatgtttctacaacagtgtttctttctttcagtTGTTCAGGTGCTACCATGATACTTTTCCAGCTACCAAATGGCGCTGTCATACGGCACACTGGAGACTTCCAAACAGACCCCAGCATGGAACACTCACACCTGGCAGGGCAAAAGGTCCACACGGTATTTCTAGATACAacgtgagcggctacttttccaagctgtttcccatctgaggctacttgttatg Alignment from CESAR cTGTCCAGGTGCTACCATGATCCTTTTCCAGCTTCCCAACGGTGCTGTCATACTGCACACCGGAGACTTCCGAGCGGACCCCAGCATGGAACGCTCTCGCCTGGCGGGCCGCAAAGTCCACACACTGTTCCTGGATACCac agctgcatttccaactacaatgtttctacaacagtgtttctttctttcagtTGTTCAGGTGCTACCATGATACTTTTCCAGCTACCAAATGGCGCTGTCATACGGCACACTGGAGACTTCCAAACAGACCCCAGCATGGAACACTCACACCTGGCAGGGCAAAAGGTCCACACGGTATTTCTAGATACAacgtgagcggctacttttccaagctgtttcccatctgaggctacttgttatg Alignment from Spaln_aa2Genome CTGTCCAGGTGCTACCATGATCCTTTTCCAGCTTCCCAACGGTGCTGTCATACTGCACACCGGAGACTTCCGAGCGGACCCCAGCATGGAACGCTCTCGCCTGGCGGGCCGCAAAGTCCACACACTGTTCCTGGATACCAC agctgcatttccaactacaatgtttctacaacagtgtttctttctttcagTTGTTCAGGTGCTACCATGATACTTTTCCAGCTACCAAATGGCGCTGTCATACGGCACACTGGAGACTTCCAAACAGACCCCAGCATGGAACACTCACACCTGGCAGGGCAAAAGGTCCACACGGTATTTCTAGATACAACgtgagcggctacttttccaagctgtttcccatctgaggctacttgttatg Alignment from Spaln_nt2Genome CTGTCCAGGTGCTACCATGATCCTTTTCCAGCTTCCCAACGGTGCTGTCATACTGCACACCGGAGACTTCCGAGCGGACCCCAGCATGGAACGCTCTCGCCTGGCGGGCCGCAAAGTCCACACACTGTTCCTGGATACCAC agctgcatttccaactacaatgtttctacaacagtgtttctttctttcagTTGTTCAGGTGCTACCATGATACTTTTCCAGCTACCAAATGGCGCTGTCATACGGCACACTGGAGACTTCCAAACAGACCCCAGCATGGAACACTCACACCTGGCAGGGCAAAAGGTCCACACGGTATTTCTAGATACAACgtgagcggctacttttccaagctgtttcccatctgaggctacttgttatg Alignment from Pairagon CTGTCCAGGTGCTACCATGATCCTTTTCCAGCTTCCCAACGGTGCTGTCATACTGCACACCGGAGACTTCCGAGCGGACCCCAGCATGGAACGCTCTCGCCTGGCGGGCCGCAAAGTCCACACACTGTTCCTGGATACCAC agctgcatttccaactacaatgtttctacaacagtgtttctttctttcagTTGTTCAGGTGCTACCATGATACTTTTCCAGCTACCAAATGGCGCTGTCATACGGCACACTGGAGACTTCCAAACAGACCCCAGCATGGAACACTCACACCTGGCAGGGCAAAAGGTCCACACGGTATTTCTAGATACAACgtgagcggctacttttccaagctgtttcccatctgaggctacttgttatg Alignment from Exonerate_protein2genome CTGTCCAGGTGCTACCATGATCCTTTTCCAGCTTCCCAACGGTGCTGTCATACTGCACACCGGAGACTTCCGAGCGGACCCCAGCATGGAACGCTCTCGCCTGGCGGGCCGCAAAGTCCACACACTGTTCCTGGATACCAC agctgcatttccaactacaatgtttctacaacagtgtttctttctttcagTTGTTCAGGTGCTACCATGATACTTTTCCAGCTACCAAATGGCGCTGTCATACGGCACACTGGAGACTTCCAAACAGACCCCAGCATGGAACACTCACACCTGGCAGGGCAAAAGGTCCACACGGTATTTCTAGATACAACgtgagcggctacttttccaagctgtttcccatctgaggctacttgttatg Alignment from Exonerate_coding2genome CTGTCCAGGTGCTACCATGATCCTTTTCCAGCTTCCCAACGGTGCTGTCATACTGCACACCGGAGACTTCCGAGCGGACCCCAGCATGGAACGCTCTCGCCTGGCGGGCCGCAAAGTCCACACACTGTTCCTGGATACCAC agctgcatttccaactacaatgtttctacaacagtgtttctttctttcagTTGTTCAGGTGCTACCATGATACTTTTCCAGCTACCAAATGGCGCTGTCATACGGCACACTGGAGACTTCCAAACAGACCCCAGCATGGAACACTCACACCTGGCAGGGCAAAAGGTCCACACGGTATTTCTAGATACAACgtgagcggctacttttccaagctgtttcccatctgaggctacttgttatg Alignment from GeneWise CTGTCCAGGTGCTACCATGATCCTTTTCCAGCTTCCCAACGGTGCTGTCATACTGCACACCGGAGACTTCCGAGCGGACCCCAGCATGGAACGCTCTCGCCTGGCGGGCCGCAAAGTCCACACACTGTTCCTGGATACCAC agctgcatttccaactacaatgtttctacaacagtgtttctttctttcagTTGTTCAGGTGCTACCATGATACTTTTCCAGCTACCAAATGGCGCTGTCATACGGCACACTGGAGACTTCCAAACAGACCCCAGCATGGAACACTCACACCTGGCAGGGCAAAAGGTCCACACGGTATTTCTAGATACAACgtgagcggctacttttccaagctgtttcccatctgaggctacttgttatg #### Ddb1_ID2922_7 --> 0 - 0 Original Alignment CAAAGCACTATTGTGTGCCATAACCGGGTGGATCCTAATGGCTCGCGGTACCTTCTGGGAGATATGGAGGGACGGCTTTTCATGCTGCTCTTAGAGAAGGAGGAGCAGATGGATGGCACTGTCACCCTCAAGGACCTTCGAGTGGAACTCCTCGGAGAG agagtagcacctctgaatgggggcatatgtttttttcctctttcttctagCAAAGTAGTATTGTATGCCATAACCGATTAGATCCTAATGGTTCACGCTACCTCCTTGGAGACATGAAGGGGCGGCTTTTCATGCTACTGTTAGAGAAGGAAGAACAGATGGATGGCACTGTC------AAGGACCTTCGTGTGGAGCTATTGGGAGAGgtaagttcaccaggtgtgtctataaagcttttttggggcattttgtgcca Alignment from CESAR CAAAGCACTATTGTGTGCCATAACCGGGTGGATCCTAATGGCTCGCGGTACCTTCTGGGAGATATGGAGGGACGGCTTTTCATGCTGCTCTTAGAGAAGGAGGAGCAGATGGATGGCACTGTCACCCTCAAGGACCTTCGAGTGGAACTCCTCGGAGAG agagtagcacctctgaatgggggcatatgtttttttcctctttcttctagCAAAGTAGTATTGTATGCCATAACCGATTAGATCCTAATGGTTCACGCTACCTCCTTGGAGACATGAAGGGGCGGCTTTTCATGCTACTGTTAGAGAAGGAAGAACAGATGGATGGCACTGTC------AAGGACCTTCGTGTGGAGCTATTGGGAGAGgtaagttcaccaggtgtgtctataaagcttttttggggcattttgtgcca Alignment from Spaln_aa2Genome CAAAGCACTATTGTGTGCCATAACCGGGTGGATCCTAATGGCTCGCGGTACCTTCTGGGAGATATGGAGGGACGGCTTTTCATGCTGCTCTTAGAGAAGGAGGAGCAGATGGATGGCACTGTCACCCTCAAGGACCTTCGAGTGGAACTCCTCGGAGAG agagtagcacctctgaatgggggcatatgtttttttcctctttcttctagCAAAGTAGTATTGTATGCCATAACCGATTAGATCCTAATGGTTCACGCTACCTCCTTGGAGACATGAAGGGGCGGCTTTTCATGCTACTGTTAGAGAAGGAAGAACAGATGGATGGCACTGTC------AAGGACCTTCGTGTGGAGCTATTGGGAGAGgtaagttcaccaggtgtgtctataaagcttttttggggcattttgtgcca Alignment from Spaln_nt2Genome CAAAGCACTATTGTGTGCCATAACCGGGTGGATCCTAATGGCTCGCGGTACCTTCTGGGAGATATGGAGGGACGGCTTTTCATGCTGCTCTTAGAGAAGGAGGAGCAGATGGATGGCACTGTCACCCTCAAGGACCTTCGAGTGGAACTCCTCGGAGAG agagtagcacctctgaatgggggcatatgtttttttcctctttcttctagCAAAGTAGTATTGTATGCCATAACCGATTAGATCCTAATGGTTCACGCTACCTCCTTGGAGACATGAAGGGGCGGCTTTTCATGCTACTGTTAGAGAAGGAAGAACAGATGGATGGCACTG------TCAAGGACCTTCGTGTGGAGCTATTGGGAGAGgtaagttcaccaggtgtgtctataaagcttttttggggcattttgtgcca Alignment from Pairagon CAAAGCACTATTGTGTGCCATAACCGGGTGGATCCTAATGGCTCGCGGTACCTTCTGGGAGATATGGAGGGACGGCTTTTCATGCTGCTCTTAGAGAAGGAGGAGCAGATGGATGGCACTGTCACCCTCAAGGACCTTCGAGTGGAACTCCTCGGAGAG agagtagcacctctgaatgggggcatatgtttttttcctctttcttctagCAAAGTAGTATTGTATGCCATAACCGATTAGATCCTAATGGTTCACGCTACCTCCTTGGAGACATGAAGGGGCGGCTTTTCATGCTACTGTTAGAGAAGGAAGAACAGATGGATGGCACTG------TCAAGGACCTTCGTGTGGAGCTATTGGGAGAGgtaagttcaccaggtgtgtctataaagcttttttggggcattttgtgcca Alignment from Exonerate_protein2genome CAAAGCACTATTGTGTGCCATAACCGGGTGGATCCTAATGGCTCGCGGTACCTTCTGGGAGATATGGAGGGACGGCTTTTCATGCTGCTCTTAGAGAAGGAGGAGCAGATGGATGGCACTGTCACCCTCAAGGACCTTCGAGTGGAACTCCTCGGAGAG agagtagcacctctgaatgggggcatatgtttttttcctctttcttctagCAAAGTAGTATTGTATGCCATAACCGATTAGATCCTAATGGTTCACGCTACCTCCTTGGAGACATGAAGGGGCGGCTTTTCATGCTACTGTTAGAGAAGGAAGAACAGATGGATGGCACTGTC------AAGGACCTTCGTGTGGAGCTATTGGGAGAGgtaagttcaccaggtgtgtctataaagcttttttggggcattttgtgcca Alignment from Exonerate_coding2genome CAAAGCACTATTGTGTGCCATAACCGGGTGGATCCTAATGGCTCGCGGTACCTTCTGGGAGATATGGAGGGACGGCTTTTCATGCTGCTCTTAGAGAAGGAGGAGCAGATGGATGGCACTGTCACCCTCAAGGACCTTCGAGTGGAACTCCTCGGAGAG agagtagcacctctgaatgggggcatatgtttttttcctctttcttctagCAAAGTAGTATTGTATGCCATAACCGATTAGATCCTAATGGTTCACGCTACCTCCTTGGAGACATGAAGGGGCGGCTTTTCATGCTACTGTTAGAGAAGGAAGAACAGATGGATGGCACTGTC------AAGGACCTTCGTGTGGAGCTATTGGGAGAGgtaagttcaccaggtgtgtctataaagcttttttggggcattttgtgcca Alignment from GeneWise CAAAGCACTATTGTGTGCCATAACCGGGTGGATCCTAATGGCTCGCGGTACCTTCTGGGAGATATGGAGGGACGGCTTTTCATGCTGCTCTTAGAGAAGGAGGAGCAGATGGATGGCACTGTCACCCTCAAGGACCTTCGAGTGGAACTCCTCGGAGAG agagtagcacctctgaatgggggcatatgtttttttcctctttcttctagCAAAGTAGTATTGTATGCCATAACCGATTAGATCCTAATGGTTCACGCTACCTCCTTGGAGACATGAAGGGGCGGCTTTTCATGCTACTGTTAGAGAAGGAAGAACAGATGGATGGCACTGTC------AAGGACCTTCGTGTGGAGCTATTGGGAGAGgtaagttcaccaggtgtgtctataaagcttttttggggcattttgtgcca #### Ddb1_ID2925_10 --> 0 - 1 Original Alignment CTGGTCACTTGCTCTGGAGCTTTCAAGGAAGGTTCCTTGCGGATCATCCGGAACGGCATTGGAATCCATGAGCATGCCAGCATTGACTTACCAGGCATCAAAg tttttgcaattatgattcttctttgaggtccacggtgcgctccgtaacagCTGGTATCATGCCCGGGAGCCTTTATGGAAGGTTCTTTGCAGATCATTCGGAATGGCATTGGAATCCATGAACACACAAGCATTGACTTACCAGGCATTAAGggtacgtttgagtggtctattcctcataaactgttgtcatagtcttctcca Alignment from CESAR CTGGTCACTTGCTCTGGAGCTTTCAAGGAAGGTTCCTTGCGGATCATCCGGAACGGCATTGGAATCCATGAGCATGCCAGCATTGACTTACCAGGCATCAAAg tttttgcaattatgattcttctttgaggtccacggtgcgctccgtaacagCTGGTATCATGCCCGGGAGCCTTTATGGAAGGTTCTTTGCAGATCATTCGGAATGGCATTGGAATCCATGAACACACAAGCATTGACTTACCAGGCATTAAGggtacgtttgagtggtctattcctcataaactgttgtcatagtcttctcca Alignment from Spaln_aa2Genome CTGGTCACTTGCTCTGGAGCTTTCAAGGAAGGTTCCTTGCGGATCATCCGGAACGGCATTGGAATCCATGAGCATGCCAGCATTGACTTACCAGGCATCAAAG tttttgcaattatgattcttctttgaggtccacggtgcgctccgtaacagCTGGTATCATGCCCGGGAGCCTTTATGGAAGGTTCTTTGCAGATCATTCGGAATGGCATTGGAATCCATGAACACACAAGCATTGACTTACCAGGCATTAAGGgtacgtttgagtggtctattcctcataaactgttgtcatagtcttctcca Alignment from Spaln_nt2Genome CTGGTCACTTGCTCTGGAGCTTTCAAGGAAGGTTCCTTGCGGATCATCCGGAACGGCATTGGAATCCATGAGCATGCCAGCATTGACTTACCAGGCATCAAAG tttttgcaattatgattcttctttgaggtccacggtgcgctccgtaacagCTGGTATCATGCCCGGGAGCCTTTATGGAAGGTTCTTTGCAGATCATTCGGAATGGCATTGGAATCCATGAACACACAAGCATTGACTTACCAGGCATTAAGGgtacgtttgagtggtctattcctcataaactgttgtcatagtcttctcca Alignment from Pairagon CTGGTCACTTGCTCTGGAGCTTTCAAGGAAGGTTCCTTGCGGATCATCCGGAACGGCATTGGAATCCATGAGCATGCCAGCATTGACTTACCAGGCATCAAAG tttttgcaattatgattcttctttgaggtccacggtgcgctccgtaacagCTGGTATCATGCCCGGGAGCCTTTATGGAAGGTTCTTTGCAGATCATTCGGAATGGCATTGGAATCCATGAACACACAAGCATTGACTTACCAGGCATTAAGGgtacgtttgagtggtctattcctcataaactgttgtcatagtcttctcca Alignment from Exonerate_protein2genome CTGGTCACTTGCTCTGGAGCTTTCAAGGAAGGTTCCTTGCGGATCATCCGGAACGGCATTGGAATCCATGAGCATGCCAGCATTGACTTACCAGGCATCAAAG tttttgcaattatgattcttctttgaggtccacggtgcgctccgtaacagCTGGTATCATGCCCGGGAGCCTTTATGGAAGGTTCTTTGCAGATCATTCGGAATGGCATTGGAATCCATGAACACACAAGCATTGACTTACCAGGCATTAAGGgtacgtttgagtggtctattcctcataaactgttgtcatagtcttctcca Alignment from Exonerate_coding2genome CTGGTCACTTGCTCTGGAGCTTTCAAGGAAGGTTCCTTGCGGATCATCCGGAACGGCATTGGAATCCATGAGCATGCCAGCATTGACTTACCAGGCATCAAAG tttttgcaattatgattcttctttgaggtccacggtgcgctccgtaacagCTGGTATCATGCCCGGGAGCCTTTATGGAAGGTTCTTTGCAGATCATTCGGAATGGCATTGGAATCCATGAACACACAAGCATTGACTTACCAGGCATTAAGGgtacgtttgagtggtctattcctcataaactgttgtcatagtcttctcca Alignment from GeneWise CTGGTCACTTGCTCTGGAGCTTTCAAGGAAGGTTCCTTGCGGATCATCCGGAACGGCATTGGAATCCATGAGCATGCCAGCATTGACTTACCAGGCATCAAAG tttttgcaattatgattcttctttgaggtccacggtgcgctccgtaacagCTGGTATCATGCCCGGGAGCCTTTATGGAAGGTTCTTTGCAGATCATTCGGAATGGCATTGGAATCCATGAACACACAAGCATTGACTTACCAGGCATTAAGGgtacgtttgagtggtctattcctcataaactgttgtcatagtcttctcca #### Ddb1_ID2929_14 --> 1 - 1 Original Alignment cCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAg tgtctagcactcatttcttcgattaatgttaaaagacttctgtcttgcagtCACACAGAAATGGAACATGAAGTAGCATGTTTGGACACTACCCCATTAGGGGATAGCAATGGTCTCTCCCCGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCGTATCTTGAGGCTCCCGTCCTTTGAATTATTACATAAGGAGATGCTGGGTGGAggtaagccttttgtttaccttcaagacaacagcctagtaagggtaaacaag Alignment from CESAR cCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAg tgtctagcactcatttcttcgattaatgttaaaagacttctgtcttgcagtCACACAGAAATGGAACATGAAGTAGCATGTTTGGACACTACCCCATTAGGGGATAGCAATGGTCTCTCCCCGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCGTATCTTGAGGCTCCCGTCCTTTGAATTATTACATAAGGAGATGCTGGGTGGAggtaagccttttgtttaccttcaagacaacagcctagtaagggtaaacaag Alignment from Spaln_aa2Genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG tgtctagcactcatttcttcgattaatgttaaaagacttctgtcttgcagTCACACAGAAATGGAACATGAAGTAGCATGTTTGGACACTACCCCATTAGGGGATAGCAATGGTCTCTCCCCGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCGTATCTTGAGGCTCCCGTCCTTTGAATTATTACATAAGGAGATGCTGGGTGGAGgtaagccttttgtttaccttcaagacaacagcctagtaagggtaaacaag Alignment from Spaln_nt2Genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG tgtctagcactcatttcttcgattaatgttaaaagacttctgtcttgcagTCACACAGAAATGGAACATGAAGTAGCATGTTTGGACACTACCCCATTAGGGGATAGCAATGGTCTCTCCCCGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCGTATCTTGAGGCTCCCGTCCTTTGAATTATTACATAAGGAGATGCTGGGTGGAGgtaagccttttgtttaccttcaagacaacagcctagtaagggtaaacaag Alignment from Pairagon CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG tgtctagcactcatttcttcgattaatgttaaaagacttctgtcttgcagTCACACAGAAATGGAACATGAAGTAGCATGTTTGGACACTACCCCATTAGGGGATAGCAATGGTCTCTCCCCGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCGTATCTTGAGGCTCCCGTCCTTTGAATTATTACATAAGGAGATGCTGGGTGGAGgtaagccttttgtttaccttcaagacaacagcctagtaagggtaaacaag Alignment from Exonerate_protein2genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG tgtctagcactcatttcttcgattaatgttaaaagacttctgtcttgcagTCACACAGAAATGGAACATGAAGTAGCATGTTTGGACACTACCCCATTAGGGGATAGCAATGGTCTCTCCCCGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCGTATCTTGAGGCTCCCGTCCTTTGAATTATTACATAAGGAGATGCTGGGTGGAGgtaagccttttgtttaccttcaagacaacagcctagtaagggtaaacaag Alignment from Exonerate_coding2genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG tgtctagcactcatttcttcgattaatgttaaaagacttctgtcttgcagTCACACAGAAATGGAACATGAAGTAGCATGTTTGGACACTACCCCATTAGGGGATAGCAATGGTCTCTCCCCGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCGTATCTTGAGGCTCCCGTCCTTTGAATTATTACATAAGGAGATGCTGGGTGGAGgtaagccttttgtttaccttcaagacaacagcctagtaagggtaaacaag Alignment from GeneWise CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG tgtctagcactcatttcttcgattaatgttaaaagacttctgtcttgcagTCACACAGAAATGGAACATGAAGTAGCATGTTTGGACACTACCCCATTAGGGGATAGCAATGGTCTCTCCCCGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCGTATCTTGAGGCTCCCGTCCTTTGAATTATTACATAAGGAGATGCTGGGTGGAGgtaagccttttgtttaccttcaagacaacagcctagtaagggtaaacaag #### Ddb1_ID2941_26 --> 1 - 0 Original Alignment cTGGAGATCCTTTCACACTGAGCGAAAGACAGAACCAGCCACAGGCTTCATCGATGGTGATCTGATTGAAAGTTTCCTAGATATCAGCCGCCCTAAGATGCAGGAGGTTGTGGCAAACTTGCAG ttactgggagaagcaatgacagtgagcatatgcctttcttccccttacagcTGGAAAGCCTTTCATACAGAGCAACAGACTGAACCGGCCACGGGCTTCATTGATGGTGACCTGATTGAAAGTTTCCTAGATATCAGCCGCCCTAAGATGCAGGAGGTTGTAGCAAACTTACTAgtctgttgtttctgtgcaggttttattcttggaggattgctcccactcag Alignment from CESAR cTGGAGATCCTTTCACACTGAGCGAAAGACAGAACCAGCCACAGGCTTCATCGATGGTGATCTGATTGAAAGTTTCCTAGATATCAGCCGCCCTAAGATGCAGGAGGTTGTGGCAAACTTGCAG ttactgggagaagcaatgacagtgagcatatgcctttcttccccttacagcTGGAAAGCCTTTCATACAGAGCAACAGACTGAACCGGCCACGGGCTTCATTGATGGTGACCTGATTGAAAGTTTCCTAGATATCAGCCGCCCTAAGATGCAGGAGGTTGTAGCAAACTTACTAgtctgttgtttctgtgcaggttttattcttggaggattgctcccactcag Alignment from Spaln_aa2Genome CTGGAGATCCTTTCACACTGAGCGAAAGACAGAACCAGCCACAGGCTTCATCGATGGTGATCTGATTGAAAGTTTCCTAGATATCAGCCGCCCTAAGATGCAGGAGGTTGTGGCAAACTTGCAG ttactgggagaagcaatgacagtgagcatatgcctttcttccccttacagCTGGAAAGCCTTTCATACAGAGCAACAGACTGAACCGGCCACGGGCTTCATTGATGGTGACCTGATTGAAAGTTTCCTAGATATCAGCCGCCCTAAGATGCAGGAGGTTGTAGCAAACTTACTAgtctgttgtttctgtgcaggttttattcttggaggattgctcccactcag Alignment from Spaln_nt2Genome CTGGAGATCCTTTCACACTGAGCGAAAGACAGAACCAGCCACAGGCTTCATCGATGGTGATCTGATTGAAAGTTTCCTAGATATCAGCCGCCCTAAGATGCAGGAGGTTGTGGCAAACTTGCAG ttactgggagaagcaatgacagtgagcatatgcctttcttccccttacagCTGGAAAGCCTTTCATACAGAGCAACAGACTGAACCGGCCACGGGCTTCATTGATGGTGACCTGATTGAAAGTTTCCTAGATATCAGCCGCCCTAAGATGCAGGAGGTTGTAGCAAACTTACTAgtctgttgtttctgtgcaggttttattcttggaggattgctcccactcag Alignment from Pairagon CTGGAGATCCTTTCACACTGAGCGAAAGACAGAACCAGCCACAGGCTTCATCGATGGTGATCTGATTGAAAGTTTCCTAGATATCAGCCGCCCTAAGATGCAGGAGGTTGTGGCAAACTTGCAG ttactgggagaagcaatgacagtgagcatatgcctttcttccccttacagCTGGAAAGCCTTTCATACAGAGCAACAGACTGAACCGGCCACGGGCTTCATTGATGGTGACCTGATTGAAAGTTTCCTAGATATCAGCCGCCCTAAGATGCAGGAGGTTGTAGCAAACTTACTAgtctgttgtttctgtgcaggttttattcttggaggattgctcccactcag Alignment from Exonerate_protein2genome CTGGAGATCCTTTCACACTGAGCGAAAGACAGAACCAGCCACAGGCTTCATCGATGGTGATCTGATTGAAAGTTTCCTAGATATCAGCCGCCCTAAGATGCAGGAGGTTGTGGCAAACTTGCAG ttactgggagaagcaatgacagtgagcatatgcctttcttccccttacagCTGGAAAGCCTTTCATACAGAGCAACAGACTGAACCGGCCACGGGCTTCATTGATGGTGACCTGATTGAAAGTTTCCTAGATATCAGCCGCCCTAAGATGCAGGAGGTTGTAGCAAACTTACTAgtctgttgtttctgtgcaggttttattcttggaggattgctcccactcag Alignment from Exonerate_coding2genome AACCGACTCAATAAGGTCATCAAAAGCGTGGGCAAGATTGAGCACTCCTTCTGGAGATCCTTTCACACTGAGCGAAAGACAGAACCAGCCACAGGCTTCATCGATGGTGATCTGATTGAAAGTTTCCTAGATATCAGCCGCCCTAAGATGCAGGAGGTTGTGGCAAACTTGCAG TTACTGGGAGAAGCAATGACAGTGAGCATATGCCTTTCTTCCCCTTACAGCTGGAAAGCCTTTCATACAGAGCAACAGACTGAACCGGCCACGGGCTTCATTGATGGTGACCTGATTGAAAGTTTCCTAGATATCAGCCGCCCTAAGATGCAGGAGGTTGTAGCAAACTTACTAgtctgttgtttctgtgcaggttttattcttggaggattgctcccactcag Alignment from GeneWise CTGGAGATCCTTTCACACTGAGCGAAAGACAGAACCAGCCACAGGCTTCATCGATGGTGATCTGATTGAAAGTTTCCTAGATATCAGCCGCCCTAAGATGCAGGAGGTTGTGGCAAACTTGCAG ttactgggagaagcaatgacagtgagcatatgcctttcttccccttacagCTGGAAAGCCTTTCATACAGAGCAACAGACTGAACCGGCCACGGGCTTCATTGATGGTGACCTGATTGAAAGTTTCCTAGATATCAGCCGCCCTAAGATGCAGGAGGTTGTAGCAAACTTACTAgtctgttgtttctgtgcaggttttattcttggaggattgctcccactcag #### Dkk1_ID6482_3 --> 2 - 1 Original Alignment gaATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAg tcaaaggagcagggatggaacgccccactttatttgcttttcccatgaaggtATATGCATGCCATCCAGGCATAGCCACTTCCCATGTGGGGAAGTCAAGGAAAGGACTGTTGAAATGCTCGGTAATGACCACAATGCTGCTGCAGGGGATGGATTTCCCAGAAAGACTGCATTGGCTTCAAAGATTTATCATACTAAAggtgagtgaacagcttaagaacttcaaacttaatctgcaaaaacaatgaga Alignment from CESAR gaATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAg tcaaaggagcagggatggaacgccccactttatttgcttttcccatgaaggtATATGCATGCCATCCAGGCATAGCCACTTCCCATGTGGGGAAGTCAAGGAAAGGACTGTTGAAATGCTCGGTAATGACCACAATGCTGCTGCAGGGGATGGATTTCCCAGAAAGACTGCATTGGCTTCAAAGATTTATCATACTAAAggtgagtgaacagcttaagaacttcaaacttaatctgcaaaaacaatgaga Alignment from Spaln_aa2Genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcagggatggaacgccccactttatttgcttttcccatgaagGTATATGCATGCCATCCAGGCATAGCCACTTCCCATGTGGGGAAGTCAAGGAAAGGACTGTTGAAATGCTCGGTAATGACCACAATGCTGCTGCAGGGGATGGATTTCCCAGAAAGACTGCATTGGCTTCAAAGATTTATCATACTAAAGgtgagtgaacagcttaagaacttcaaacttaatctgcaaaaacaatgaga Alignment from Spaln_nt2Genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcagggatggaacgccccactttatttgcttttcccatgaagGTATATGCATGCCATCCAGGCATAGCCACTTCCCATGTGGGGAAGTCAAGGAAAGGACTGTTGAAATGCTCGGTAATGACCACAATGCTGCTGCAGGGGATGGATTTCCCAGAAAGACTGCATTGGCTTCAAAGATTTATCATACTAAAGgtgagtgaacagcttaagaacttcaaacttaatctgcaaaaacaatgaga Alignment from Pairagon GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcagggatggaacgccccactttatttgcttttcccatgaagGTATATGCATGCCATCCAGGCATAGCCACTTCCCATGTGGGGAAGTCAAGGAAAGGACTGTTGAAATGCTCGGTAATGACCACAATGCTGCTGCAGGGGATGGATTTCCCAGAAAGACTGCATTGGCTTCAAAGATTTATCATACTAAAGgtgagtgaacagcttaagaacttcaaacttaatctgcaaaaacaatgaga Alignment from Exonerate_protein2genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcagggatggaacgccccactttatttgcttttcccatgaagGTATATGCATGCCATCCAGGCATAGCCACTTCCCATGTGGGGAAGTCAAGGAAAGGACTGTTGAAATGCTCGGTAATGACCACAATGCTGCTGCAGGGGATGGATTTCCCAGAAAGACTGCATTGGCTTCAAAGATTTATCATACTAAAGgtgagtgaacagcttaagaacttcaaacttaatctgcaaaaacaatgaga Alignment from Exonerate_coding2genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcagggatggaacgccccactttatttgcttttcccatgaagGTATATGCATGCCATCCAGGCATAGCCACTTCCCATGTGGGGAAGTCAAGGAAAGGACTGTTGAAATGCTCGGTAATGACCACAATGCTGCTGCAGGGGATGGATTTCCCAGAAAGACTGCATTGGCTTCAAAGATTTATCATACTAAAGgtgagtgaacagcttaagaacttcaaacttaatctgcaaaaacaatgaga Alignment from GeneWise GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcagggatggaacgccccactttatttgcttttcccatgaagGTATATGCATGCCATCCAGGCATAGCCACTTCCCATGTGGGGAAGTCAAGGAAAGGACTGTTGAAATGCTCGGTAATGACCACAATGCTGCTGCAGGGGATGGATTTCCCAGAAAGACTGCATTGGCTTCAAAGATTTATCATACTAAAGgtgagtgaacagcttaagaacttcaaacttaatctgcaaaaacaatgaga #### Dmrt1_ID5475_2 --> 0 - 1 Original Alignment GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAg ctgctctgatggggtttaacttactttaaaaatgtctgtttactctctagGTGGGTTTGAGAAGGCAGCAGGCACAGGAAGAGGATCTTGGCATCAGCCACCCAATACCCCTGCCAGGTGCAGCTGAACTCCTGGTTAAGAGGGAGAATAATGCCAGCAACCCATGCCTTATGGCTGAGAACAGCAGCTCAGCCCAGCCCCCACCAGCCAGTACCCCCACCCCTGCTGCCTCAggtgagaaaagatggatcacagtttgggattgtgtgatgggctaaaaggct Alignment from CESAR GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAg ctgctctgatggggtttaacttactttaaaaatgtctgtttactctctagGTGGGTTTGAGAAGGCAGCAGGCACAGGAAGAGGATCTTGGCATCAGCCACCCAATACCCCTGCCAGGTGCAGCTGAACTCCTGGTTAAGAGGGAGAATAATGCCAGCAACCCATGCCTTATGGCTGAGAACAGCAGCTCAGCCCAGCCCCCACCAGCCAGTACCCCCACCCCTGCTGCCTCAggtgagaaaagatggatcacagtttgggattgtgtgatgggctaaaaggct Alignment from Spaln_aa2Genome GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAG ctgctctgatggggtttaacttactttaaaaatgtctgtttactctctagGTGGGTTTGAGAAGGCAGCAGGCACAGGAAGAGGATCTTGGCATCAGCCACCCAATACCCCTGCCAGGTGCAGCTGAACTCCTGGTTAAGAGGGAGAATAATGCCAGCAACCCATGCCTTATGGCTGAGAACAGCAGCTCAGCCCAGCCCCCACCAGCCAGTACCCCCACCCCTGCTGCCTCAGgtgagaaaagatggatcacagtttgggattgtgtgatgggctaaaaggct Alignment from Spaln_nt2Genome GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAG ctgctctgatggggtttaacttactttaaaaatgtctgtttactctctagGTGGGTTTGAGAAGGCAGCAGGCACAGGAAGAGGATCTTGGCATCAGCCACCCAATACCCCTGCCAGGTGCAGCTGAACTCCTGGTTAAGAGGGAGAATAATGCCAGCAACCCATGCCTTATGGCTGAGAACAGCAGCTCAGCCCAGCCCCCACCAGCCAGTACCCCCACCCCTGCTGCCTCAGgtgagaaaagatggatcacagtttgggattgtgtgatgggctaaaaggct Alignment from Pairagon GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAG ctgctctgatggggtttaacttactttaaaaatgtctgtttactctctagGTGGGTTTGAGAAGGCAGCAGGCACAGGAAGAGGATCTTGGCATCAGCCACCCAATACCCCTGCCAGGTGCAGCTGAACTCCTGGTTAAGAGGGAGAATAATGCCAGCAACCCATGCCTTATGGCTGAGAACAGCAGCTCAGCCCAGCCCCCACCAGCCAGTACCCCCACCCCTGCTGCCTCAGgtgagaaaagatggatcacagtttgggattgtgtgatgggctaaaaggct Alignment from Exonerate_protein2genome GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAG ctgctctgatggggtttaacttactttaaaaatgtctgtttactctctagGTGGGTTTGAGAAGGCAGCAGGCACAGGAAGAGGATCTTGGCATCAGCCACCCAATACCCCTGCCAGGTGCAGCTGAACTCCTGGTTAAGAGGGAGAATAATGCCAGCAACCCATGCCTTATGGCTGAGAACAGCAGCTCAGCCCAGCCCCCACCAGCCAGTACCCCCACCCCTGCTGCCTCAGgtgagaaaagatggatcacagtttgggattgtgtgatgggctaaaaggct Alignment from Exonerate_coding2genome GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAG ctgctctgatggggtttaacttactttaaaaatgtctgtttactctctagGTGGGTTTGAGAAGGCAGCAGGCACAGGAAGAGGATCTTGGCATCAGCCACCCAATACCCCTGCCAGGTGCAGCTGAACTCCTGGTTAAGAGGGAGAATAATGCCAGCAACCCATGCCTTATGGCTGAGAACAGCAGCTCAGCCCAGCCCCCACCAGCCAGTACCCCCACCCCTGCTGCCTCAGgtgagaaaagatggatcacagtttgggattgtgtgatgggctaaaaggct Alignment from GeneWise GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAG ctgctctgatggggtttaacttactttaaaaatgtctgtttactctctagGTGGGTTTGAGAAGGCAGCAGGCACAGGAAGAGGATCTTGGCATCAGCCACCCAATACCCCTGCCAGGTGCAGCTGAACTCCTGGTTAAGAGGGAGAATAATGCCAGCAACCCATGCCTTATGGCTGAGAACAGCAGCTCAGCCCAGCCCCCACCAGCCAGTACCCCCACCCCTGCTGCCTCAGgtgagaaaagatggatcacagtttgggattgtgtgatgggctaaaaggct #### Dmrt1_ID5483_3 --> 2 - 0 Original Alignment agGGACGCATGGTCATCCAGGATATTCCTGCTGTCACCAGCAGAGGGCATATGGAGAACACATCTGACCTGGTATCAGACCCCGCCTACTACAGCAGCTTTTACCAGCCTTCTCTGTTTCCTTACTACAACAATCTGTACAACTACCCCCAGTATTCCATGGCCTTGTCTGCTGAGTCCTCCTCAGGGGAGGTGGGGAATTCCCTCGGGGGATCCCCCGTGAAGAACAGCCTGCGGAGTCTCCCAGCACCTTACGTGCCTGCTCAGACTGGAAACCAGTGGCAG ggatcatagtgtaagtaacctagctggaccctatctttgtttacttccagagGGACGCATGGTCATACAGGACATTTCAACTGTAACCAGCAGGGGAGATATGGAGAACACATCTGACCTGGTCTCTGATCCTGCTTGTTACAGCAGCTTTTATCAGCCCTCTTTATTTCCATACTACAACAATCTGTACAATTACCCCCAGTATTCAATGGCTCTATGTGCTGAATCCTCATCAGGGGAGGTGGGGAATTCCCTTGGAGGATCCCCTGTAAAAAACAGCATACGAGGTTTGGCAGCACCTTATGTACCTGATCGGACAGGAAACCAGTGGCAGgtaagtcctagcctgataaagtagtagacacctgcacatcatgtagtatc Alignment from CESAR agGGACGCATGGTCATCCAGGATATTCCTGCTGTCACCAGCAGAGGGCATATGGAGAACACATCTGACCTGGTATCAGACCCCGCCTACTACAGCAGCTTTTACCAGCCTTCTCTGTTTCCTTACTACAACAATCTGTACAACTACCCCCAGTATTCCATGGCCTTGTCTGCTGAGTCCTCCTCAGGGGAGGTGGGGAATTCCCTCGGGGGATCCCCCGTGAAGAACAGCCTGCGGAGTCTCCCAGCACCTTACGTGCCTGCTCAGACTGGAAACCAGTGGCAG ggatcatagtgtaagtaacctagctggaccctatctttgtttacttccagagGGACGCATGGTCATACAGGACATTTCAACTGTAACCAGCAGGGGAGATATGGAGAACACATCTGACCTGGTCTCTGATCCTGCTTGTTACAGCAGCTTTTATCAGCCCTCTTTATTTCCATACTACAACAATCTGTACAATTACCCCCAGTATTCAATGGCTCTATGTGCTGAATCCTCATCAGGGGAGGTGGGGAATTCCCTTGGAGGATCCCCTGTAAAAAACAGCATACGAGGTTTGGCAGCACCTTATGTACCTGATCGGACAGGAAACCAGTGGCAGgtaagtcctagcctgataaagtagtagacacctgcacatcatgtagtatc Alignment from Spaln_aa2Genome AGGGACGCATGGTCATCCAGGATATTCCTGCTGTCACCAGCAGAGGGCATATGGAGAACACATCTGACCTGGTATCAGACCCCGCCTACTACAGCAGCTTTTACCAGCCTTCTCTGTTTCCTTACTACAACAATCTGTACAACTACCCCCAGTATTCCATGGCCTTGTCTGCTGAGTCCTCCTCAGGGGAGGTGGGGAATTCCCTCGGGGGATCCCCCGTGAAGAACAGCCTGCGGAGTCTCCCAGCACCTTACGTGCCTGCTCAGACTGGAAACCAGTGGCAG ggatcatagtgtaagtaacctagctggaccctatctttgtttacttccagAGGGACGCATGGTCATACAGGACATTTCAACTGTAACCAGCAGGGGAGATATGGAGAACACATCTGACCTGGTCTCTGATCCTGCTTGTTACAGCAGCTTTTATCAGCCCTCTTTATTTCCATACTACAACAATCTGTACAATTACCCCCAGTATTCAATGGCTCTATGTGCTGAATCCTCATCAGGGGAGGTGGGGAATTCCCTTGGAGGATCCCCTGTAAAAAACAGCATACGAGGTTTGGCAGCACCTTATGTACCTGATCGGACAGGAAACCAGTGGCAGgtaagtcctagcctgataaagtagtagacacctgcacatcatgtagtatc Alignment from Spaln_nt2Genome AGGGACGCATGGTCATCCAGGATATTCCTGCTGTCACCAGCAGAGGGCATATGGAGAACACATCTGACCTGGTATCAGACCCCGCCTACTACAGCAGCTTTTACCAGCCTTCTCTGTTTCCTTACTACAACAATCTGTACAACTACCCCCAGTATTCCATGGCCTTGTCTGCTGAGTCCTCCTCAGGGGAGGTGGGGAATTCCCTCGGGGGATCCCCCGTGAAGAACAGCCTGCGGAGTCTCCCAGCACCTTACGTGCCTGCTCAGACTGGAAACCAGTGGCAG ggatcatagtgtaagtaacctagctggaccctatctttgtttacttccagAGGGACGCATGGTCATACAGGACATTTCAACTGTAACCAGCAGGGGAGATATGGAGAACACATCTGACCTGGTCTCTGATCCTGCTTGTTACAGCAGCTTTTATCAGCCCTCTTTATTTCCATACTACAACAATCTGTACAATTACCCCCAGTATTCAATGGCTCTATGTGCTGAATCCTCATCAGGGGAGGTGGGGAATTCCCTTGGAGGATCCCCTGTAAAAAACAGCATACGAGGTTTGGCAGCACCTTATGTACCTGATCGGACAGGAAACCAGTGGCAGgtaagtcctagcctgataaagtagtagacacctgcacatcatgtagtatc Alignment from Pairagon AGGGACGCATGGTCATCCAGGATATTCCTGCTGTCACCAGCAGAGGGCATATGGAGAACACATCTGACCTGGTATCAGACCCCGCCTACTACAGCAGCTTTTACCAGCCTTCTCTGTTTCCTTACTACAACAATCTGTACAACTACCCCCAGTATTCCATGGCCTTGTCTGCTGAGTCCTCCTCAGGGGAGGTGGGGAATTCCCTCGGGGGATCCCCCGTGAAGAACAGCCTGCGGAGTCTCCCAGCACCTTACGTGCCTGCTCAGACTGGAAACCAGTGGCAG ggatcatagtgtaagtaacctagctggaccctatctttgtttacttccagAGGGACGCATGGTCATACAGGACATTTCAACTGTAACCAGCAGGGGAGATATGGAGAACACATCTGACCTGGTCTCTGATCCTGCTTGTTACAGCAGCTTTTATCAGCCCTCTTTATTTCCATACTACAACAATCTGTACAATTACCCCCAGTATTCAATGGCTCTATGTGCTGAATCCTCATCAGGGGAGGTGGGGAATTCCCTTGGAGGATCCCCTGTAAAAAACAGCATACGAGGTTTGGCAGCACCTTATGTACCTGATCGGACAGGAAACCAGTGGCAGgtaagtcctagcctgataaagtagtagacacctgcacatcatgtagtatc Alignment from Exonerate_protein2genome AGGGACGCATGGTCATCCAGGATATTCCTGCTGTCACCAGCAGAGGGCATATGGAGAACACATCTGACCTGGTATCAGACCCCGCCTACTACAGCAGCTTTTACCAGCCTTCTCTGTTTCCTTACTACAACAATCTGTACAACTACCCCCAGTATTCCATGGCCTTGTCTGCTGAGTCCTCCTCAGGGGAGGTGGGGAATTCCCTCGGGGGATCCCCCGTGAAGAACAGCCTGCGGAGTCTCCCAGCACCTTACGTGCCTGCTCAGACTGGAAACCAGTGGCAG ggatcatagtgtaagtaacctagctggaccctatctttgtttacttccagAGGGACGCATGGTCATACAGGACATTTCAACTGTAACCAGCAGGGGAGATATGGAGAACACATCTGACCTGGTCTCTGATCCTGCTTGTTACAGCAGCTTTTATCAGCCCTCTTTATTTCCATACTACAACAATCTGTACAATTACCCCCAGTATTCAATGGCTCTATGTGCTGAATCCTCATCAGGGGAGGTGGGGAATTCCCTTGGAGGATCCCCTGTAAAAAACAGCATACGAGGTTTGGCAGCACCTTATGTACCTGATCGGACAGGAAACCAGTGGCAGgtaagtcctagcctgataaagtagtagacacctgcacatcatgtagtatc Alignment from Exonerate_coding2genome AGGGACGCATGGTCATCCAGGATATTCCTGCTGTCACCAGCAGAGGGCATATGGAGAACACATCTGACCTGGTATCAGACCCCGCCTACTACAGCAGCTTTTACCAGCCTTCTCTGTTTCCTTACTACAACAATCTGTACAACTACCCCCAGTATTCCATGGCCTTGTCTGCTGAGTCCTCCTCAGGGGAGGTGGGGAATTCCCTCGGGGGATCCCCCGTGAAGAACAGCCTGCGGAGTCTCCCAGCACCTTACGTGCCTGCTCAGACTGGAAACCAGTGGCAG ggatcatagtgtaagtaacctagctggaccctatctttgtttacttccagAGGGACGCATGGTCATACAGGACATTTCAACTGTAACCAGCAGGGGAGATATGGAGAACACATCTGACCTGGTCTCTGATCCTGCTTGTTACAGCAGCTTTTATCAGCCCTCTTTATTTCCATACTACAACAATCTGTACAATTACCCCCAGTATTCAATGGCTCTATGTGCTGAATCCTCATCAGGGGAGGTGGGGAATTCCCTTGGAGGATCCCCTGTAAAAAACAGCATACGAGGTTTGGCAGCACCTTATGTACCTGATCGGACAGGAAACCAGTGGCAGgtaagtcctagcctgataaagtagtagacacctgcacatcatgtagtatc Alignment from GeneWise AGGGACGCATGGTCATCCAGGATATTCCTGCTGTCACCAGCAGAGGGCATATGGAGAACACATCTGACCTGGTATCAGACCCCGCCTACTACAGCAGCTTTTACCAGCCTTCTCTGTTTCCTTACTACAACAATCTGTACAACTACCCCCAGTATTCCATGGCCTTGTCTGCTGAGTCCTCCTCAGGGGAGGTGGGGAATTCCCTCGGGGGATCCCCCGTGAAGAACAGCCTGCGGAGTCTCCCAGCACCTTACGTGCCTGCTCAGACTGGAAACCAGTGGCAG ggatcatagtgtaagtaacctagctggaccctatctttgtttacttccagAGGGACGCATGGTCATACAGGACATTTCAACTGTAACCAGCAGGGGAGATATGGAGAACACATCTGACCTGGTCTCTGATCCTGCTTGTTACAGCAGCTTTTATCAGCCCTCTTTATTTCCATACTACAACAATCTGTACAATTACCCCCAGTATTCAATGGCTCTATGTGCTGAATCCTCATCAGGGGAGGTGGGGAATTCCCTTGGAGGATCCCCTGTAAAAAACAGCATACGAGGTTTGGCAGCACCTTATGTACCTGATCGGACAGGAAACCAGTGGCAGgtaagtcctagcctgataaagtagtagacacctgcacatcatgtagtatc #### Dmrt2_ID5523_2 --> 0 - 1 Original Alignment GACAAGAAGGGGCTTTCTGGGAAACAGAACAATTTCGATCGGAAAGCAGTGTACCAGAGGCAAGTCAGGGCGCCGAGTTTGCTGGCCAAAAGCATTTTAGAAg caatataaatacagcaatgttctggttctatttttttattttttggccagGACAAGAAGGGACTTTCTGGGAAACAGAACAATTTCGATCGGAAGGCAGTGTACCAGAGGCAGGTCAGGGCCCCAAGTTTGCTGGCCAAAAGCATTTTAGAAggtaagaacagtgggtagcatcccagatagttcagaactacttacctacca Alignment from CESAR GACAAGAAGGGGCTTTCTGGGAAACAGAACAATTTCGATCGGAAAGCAGTGTACCAGAGGCAAGTCAGGGCGCCGAGTTTGCTGGCCAAAAGCATTTTAGAAg caatataaatacagcaatgttctggttctatttttttattttttggccagGACAAGAAGGGACTTTCTGGGAAACAGAACAATTTCGATCGGAAGGCAGTGTACCAGAGGCAGGTCAGGGCCCCAAGTTTGCTGGCCAAAAGCATTTTAGAAggtaagaacagtgggtagcatcccagatagttcagaactacttacctacca Alignment from Spaln_aa2Genome GACAAGAAGGGGCTTTCTGGGAAACAGAACAATTTCGATCGGAAAGCAGTGTACCAGAGGCAAGTCAGGGCGCCGAGTTTGCTGGCCAAAAGCATTTTAGAAG caatataaatacagcaatgttctggttctatttttttattttttggccagGACAAGAAGGGACTTTCTGGGAAACAGAACAATTTCGATCGGAAGGCAGTGTACCAGAGGCAGGTCAGGGCCCCAAGTTTGCTGGCCAAAAGCATTTTAGAAGgtaagaacagtgggtagcatcccagatagttcagaactacttacctacca Alignment from Spaln_nt2Genome GACAAGAAGGGGCTTTCTGGGAAACAGAACAATTTCGATCGGAAAGCAGTGTACCAGAGGCAAGTCAGGGCGCCGAGTTTGCTGGCCAAAAGCATTTTAGAAG caatataaatacagcaatgttctggttctatttttttattttttggccagGACAAGAAGGGACTTTCTGGGAAACAGAACAATTTCGATCGGAAGGCAGTGTACCAGAGGCAGGTCAGGGCCCCAAGTTTGCTGGCCAAAAGCATTTTAGAAGgtaagaacagtgggtagcatcccagatagttcagaactacttacctacca Alignment from Pairagon GACAAGAAGGGGCTTTCTGGGAAACAGAACAATTTCGATCGGAAAGCAGTGTACCAGAGGCAAGTCAGGGCGCCGAGTTTGCTGGCCAAAAGCATTTTAGAAG caatataaatacagcaatgttctggttctatttttttattttttggccagGACAAGAAGGGACTTTCTGGGAAACAGAACAATTTCGATCGGAAGGCAGTGTACCAGAGGCAGGTCAGGGCCCCAAGTTTGCTGGCCAAAAGCATTTTAGAAGgtaagaacagtgggtagcatcccagatagttcagaactacttacctacca Alignment from Exonerate_protein2genome GACAAGAAGGGGCTTTCTGGGAAACAGAACAATTTCGATCGGAAAGCAGTGTACCAGAGGCAAGTCAGGGCGCCGAGTTTGCTGGCCAAAAGCATTTTAGAAG caatataaatacagcaatgttctggttctatttttttattttttggccagGACAAGAAGGGACTTTCTGGGAAACAGAACAATTTCGATCGGAAGGCAGTGTACCAGAGGCAGGTCAGGGCCCCAAGTTTGCTGGCCAAAAGCATTTTAGAAGgtaagaacagtgggtagcatcccagatagttcagaactacttacctacca Alignment from Exonerate_coding2genome GACAAGAAGGGGCTTTCTGGGAAACAGAACAATTTCGATCGGAAAGCAGTGTACCAGAGGCAAGTCAGGGCGCCGAGTTTGCTGGCCAAAAGCATTTTAGAAG caatataaatacagcaatgttctggttctatttttttattttttggccagGACAAGAAGGGACTTTCTGGGAAACAGAACAATTTCGATCGGAAGGCAGTGTACCAGAGGCAGGTCAGGGCCCCAAGTTTGCTGGCCAAAAGCATTTTAGAAGgtaagaacagtgggtagcatcccagatagttcagaactacttacctacca Alignment from GeneWise GACAAGAAGGGGCTTTCTGGGAAACAGAACAATTTCGATCGGAAAGCAGTGTACCAGAGGCAAGTCAGGGCGCCGAGTTTGCTGGCCAAAAGCATTTTAGAAG caatataaatacagcaatgttctggttctatttttttattttttggccagGACAAGAAGGGACTTTCTGGGAAACAGAACAATTTCGATCGGAAGGCAGTGTACCAGAGGCAGGTCAGGGCCCCAAGTTTGCTGGCCAAAAGCATTTTAGAAGgtaagaacagtgggtagcatcccagatagttcagaactacttacctacca #### Dnajc4_ID1964_4 --> 1 - 2 Original Alignment cTCCTGGGAACCCCCCAACGCTCAATACTGGGCCCAGTTCCACAGTGTGAGGCCGCAGGGGCCGGAGTCAAGGAAGCAGCAGCGTAAACACAACCAGCGGGTCCTGGGGTACTGCCTCCTGCTCATGGTGGCAGGCATGGGCCTGCACTATGTTGCCTTCag tgttctccccatctactcacctttttctagtgtgcatttcatccttgcagcTCCTGGGAACTACCCAACACTGAGTACTGGGCAAAGTTCCACAGCGTGAAACCACAGGGGTCAGAGTCAAGGAAGCAACACCATCAATATAACCAGCAAGTTCTT------GGACCACTGCCCATGGTGGCCGGTATAGGATTACACTATGTTGCCTTCaggtagctccctttgtctccctggtttatggagttgtgagacaagtttgaaa Alignment from CESAR cTCCTGGGAACCCCCCAACGCTCAATACTGGGCCCAGTTCCACAGTGTGAGGCCGCAGGGGCCGGAGTCAAGGAAGCAGCAGCGTAAACACAACCAGCGGGTCCTGGGGTACTGCCTCCTGCTCATGGTGGCAGGCATGGGCCTGCACTATGTTGCCTTCag tgttctccccatctactcacctttttctagtgtgcatttcatccttgcagcTCCTGGGAACTACCCAACACTGAGTACTGGGCAAAGTTCCACAGCGTGAAACCACAGGGGTCAGAGTCAAGGAAGCAACACCATCAATATAACCAGCAAGTTCTTGGA------CCACTGCCCATGGTGGCCGGTATAGGATTACACTATGTTGCCTTCaggtagctccctttgtctccctggtttatggagttgtgagacaagtttgaaa Alignment from Spaln_aa2Genome CTCCTGGGAACCCCCCAACGCTCAATACTGGGCCCAGTTCCACAGTGTGAGGCCGCAGGGGCCGGAGTCAAGGAAGCAGCAGCGTAAACACAACCAGCGGGTCCTGGGGTACTGCCTCCTGCTCATGGTGGCAGGCATGGGCCTGCACTATGTTGCCTTCAG tgttctccccatctactcacctttttctagtgtgcatttcatccttgcagCTCCTGGGAACTACCCAACACTGAGTACTGGGCAAAGTTCCACAGCGTGAAACCACAGGGGTCAGAGTCAAGGAAGCAACACCATCAATATAACCAGCAAGTTCTTGGA------CCACTGCCCATGGTGGCCGGTATAGGATTACACTATGTTGCCTTCAGgtagctccctttgtctccctggtttatggagttgtgagacaagtttgaaa Alignment from Spaln_nt2Genome CTCCTGGGAACCCCCCAACGCTCAATACTGGGCCCAGTTCCACAGTGTGAGGCCGCAGGGGCCGGAGTCAAGGAAGCAGCAGCGTAAACACAACCAGCGGGTCCTGGGGTACTGCCTCCTGCTCATGGTGGCAGGCATGGGCCTGCACTATGTTGCCTTCAG tgttctccccatctactcacctttttctagtgtgcatttcatccttgcagCTCCTGGGAACTACCCAACACTGAGTACTGGGCAAAGTTCCACAGCGTGAAACCACAGGGGTCAGAGTCAAGGAAGCAACACCATCAATATAACCAGCAAGTTCTTG------GACCACTGCCCATGGTGGCCGGTATAGGATTACACTATGTTGCCTTCAGgtagctccctttgtctccctggtttatggagttgtgagacaagtttgaaa Alignment from Pairagon CTCCTGGGAACCCCCCAACGCTCAATACTGGGCCCAGTTCCACAGTGTGAGGCCGCAGGGGCCGGAGTCAAGGAAGCAGCAGCGTAAACACAACCAGCGGGTCCTGGGGTACTGCCTCCTGCTCATGGTGGCAGGCATGGGCCTGCACTATGTTGCCTTCAG tgttctccccatctactcacctttttctagtgtgcatttcatccttgcagCTCCTGGGAACTACCCAACACTGAGTACTGGGCAAAGTTCCACAGCGTGAAACCACAGGGGTCAGAGTCAAGGAAGCAACACCATCAATATAACCAGCAAGTTCTTGGA------CCACTGCCCATGGTGGCCGGTATAGGATTACACTATGTTGCCTTCAGgtagctccctttgtctccctggtttatggagttgtgagacaagtttgaaa Alignment from Exonerate_protein2genome CTCCTGGGAACCCCCCAACGCTCAATACTGGGCCCAGTTCCACAGTGTGAGGCCGCAGGGGCCGGAGTCAAGGAAGCAGCAGCGTAAACACAACCAGCGGGTCCTGGGGTACTGCCTCCTGCTCATGGTGGCAGGCATGGGCCTGCACTATGTTGCCTTCAG tgttctccccatctactcacctttttctagtgtgcatttcatccttgcagCTCCTGGGAACTACCCAACACTGAGTACTGGGCAAAGTTCCACAGCGTGAAACCACAGGGGTCAGAGTCAAGGAAGCAACACCATCAATATAACCAGCAAGTTCTTGGA------CCACTGCCCATGGTGGCCGGTATAGGATTACACTATGTTGCCTTCAGgtagctccctttgtctccctggtttatggagttgtgagacaagtttgaaa Alignment from Exonerate_coding2genome CTCCTGGGAACCCCCCAACGCTCAATACTGGGCCCAGTTCCACAGTGTGAGGCCGCAGGGGCCGGAGTCAAGGAAGCAGCAGCGTAAACACAACCAGCGGGTCCTGGGGTACTGCCTCCTGCTCATGGTGGCAGGCATGGGCCTGCACTATGTTGCCTTCAG tgttctccccatctactcacctttttctagtgtgcatttcatccttgcagCTCCTGGGAACTACCCAACACTGAGTACTGGGCAAAGTTCCACAGCGTGAAACCACAGGGGTCAGAGTCAAGGAAGCAACACCATCAATATAACCAGCAAGTTCTTGGA------CCACTGCCCATGGTGGCCGGTATAGGATTACACTATGTTGCCTTCAGgtagctccctttgtctccctggtttatggagttgtgagacaagtttgaaa Alignment from GeneWise CTCCTGGGAACCCCCCAACGCTCAATACTGGGCCCAGTTCCACAGTGTGAGGCCGCAGGGGCCGGAGTCAAGGAAGCAGCAGCGTAAACACAACCAGCGGGTCCTGGGGTACTGCCTCCTGCTCATGGTGGCAGGCATGGGCCTGCACTATGTTGCCTTCAG tgttctccccatctactcacctttttctagtgtgcatttcatccttgcagCTCCTGGGAACTACCCAACACTGAGTACTGGGCAAAGTTCCACAGCGTGAAACCACAGGGGTCAGAGTCAAGGAAGCAACACCATCAATATAACCAGCAAGTTCTTGGA------CCACTGCCCATGGTGGCCGGTATAGGATTACACTATGTTGCCTTCAGgtagctccctttgtctccctggtttatggagttgtgagacaagtttgaaa #### Dnmbp_ID8856_10 --> 0 - 0 Original Alignment GAATCTGCATGTGTGAAGGTGGTGGCAGCCATGAGCATATGGGATCTGTGCATGGAGAGGGGACATCATGACCTGGAGCAGTTCGAGAAGGTGCATCGCTACATCAGTGACCAGCTCTTCACACGGTTT agaagcttggtcccctacatttcccacttaagatctagtgctttccccagGAGTCTGCATGTGTAAGAGTGGTAGCAGCAATGAGCATATGGGATCTCTGTATGGAGAGGGGACACGATGACTTGGAGCAGTTTAAAAAAGTGCATCAATACATAAGTGACCAGCTGTTTACACGATTTgtatgaagtattattatcctactcccatgacactccactcgtaaccttaa Alignment from CESAR GAATCTGCATGTGTGAAGGTGGTGGCAGCCATGAGCATATGGGATCTGTGCATGGAGAGGGGACATCATGACCTGGAGCAGTTCGAGAAGGTGCATCGCTACATCAGTGACCAGCTCTTCACACGGTTT agaagcttggtcccctacatttcccacttaagatctagtgctttccccagGAGTCTGCATGTGTAAGAGTGGTAGCAGCAATGAGCATATGGGATCTCTGTATGGAGAGGGGACACGATGACTTGGAGCAGTTTAAAAAAGTGCATCAATACATAAGTGACCAGCTGTTTACACGATTTgtatgaagtattattatcctactcccatgacactccactcgtaaccttaa Alignment from Spaln_aa2Genome GAATCTGCATGTGTGAAGGTGGTGGCAGCCATGAGCATATGGGATCTGTGCATGGAGAGGGGACATCATGACCTGGAGCAGTTCGAGAAGGTGCATCGCTACATCAGTGACCAGCTCTTCACACGGTTT agaagcttggtcccctacatttcccacttaagatctagtgctttccccagGAGTCTGCATGTGTAAGAGTGGTAGCAGCAATGAGCATATGGGATCTCTGTATGGAGAGGGGACACGATGACTTGGAGCAGTTTAAAAAAGTGCATCAATACATAAGTGACCAGCTGTTTACACGATTTgtatgaagtattattatcctactcccatgacactccactcgtaaccttaa Alignment from Spaln_nt2Genome GAATCTGCATGTGTGAAGGTGGTGGCAGCCATGAGCATATGGGATCTGTGCATGGAGAGGGGACATCATGACCTGGAGCAGTTCGAGAAGGTGCATCGCTACATCAGTGACCAGCTCTTCACACGGTTT agaagcttggtcccctacatttcccacttaagatctagtgctttccccagGAGTCTGCATGTGTAAGAGTGGTAGCAGCAATGAGCATATGGGATCTCTGTATGGAGAGGGGACACGATGACTTGGAGCAGTTTAAAAAAGTGCATCAATACATAAGTGACCAGCTGTTTACACGATTTgtatgaagtattattatcctactcccatgacactccactcgtaaccttaa Alignment from Pairagon GAATCTGCATGTGTGAAGGTGGTGGCAGCCATGAGCATATGGGATCTGTGCATGGAGAGGGGACATCATGACCTGGAGCAGTTCGAGAAGGTGCATCGCTACATCAGTGACCAGCTCTTCACACGGTTT agaagcttggtcccctacatttcccacttaagatctagtgctttccccagGAGTCTGCATGTGTAAGAGTGGTAGCAGCAATGAGCATATGGGATCTCTGTATGGAGAGGGGACACGATGACTTGGAGCAGTTTAAAAAAGTGCATCAATACATAAGTGACCAGCTGTTTACACGATTTgtatgaagtattattatcctactcccatgacactccactcgtaaccttaa Alignment from Exonerate_protein2genome GAATCTGCATGTGTGAAGGTGGTGGCAGCCATGAGCATATGGGATCTGTGCATGGAGAGGGGACATCATGACCTGGAGCAGTTCGAGAAGGTGCATCGCTACATCAGTGACCAGCTCTTCACACGGTTT agaagcttggtcccctacatttcccacttaagatctagtgctttccccagGAGTCTGCATGTGTAAGAGTGGTAGCAGCAATGAGCATATGGGATCTCTGTATGGAGAGGGGACACGATGACTTGGAGCAGTTTAAAAAAGTGCATCAATACATAAGTGACCAGCTGTTTACACGATTTgtatgaagtattattatcctactcccatgacactccactcgtaaccttaa Alignment from Exonerate_coding2genome GAATCTGCATGTGTGAAGGTGGTGGCAGCCATGAGCATATGGGATCTGTGCATGGAGAGGGGACATCATGACCTGGAGCAGTTCGAGAAGGTGCATCGCTACATCAGTGACCAGCTCTTCACACGGTTT agaagcttggtcccctacatttcccacttaagatctagtgctttccccagGAGTCTGCATGTGTAAGAGTGGTAGCAGCAATGAGCATATGGGATCTCTGTATGGAGAGGGGACACGATGACTTGGAGCAGTTTAAAAAAGTGCATCAATACATAAGTGACCAGCTGTTTACACGATTTgtatgaagtattattatcctactcccatgacactccactcgtaaccttaa Alignment from GeneWise GAATCTGCATGTGTGAAGGTGGTGGCAGCCATGAGCATATGGGATCTGTGCATGGAGAGGGGACATCATGACCTGGAGCAGTTCGAGAAGGTGCATCGCTACATCAGTGACCAGCTCTTCACACGGTTT agaagcttggtcccctacatttcccacttaagatctagtgctttccccagGAGTCTGCATGTGTAAGAGTGGTAGCAGCAATGAGCATATGGGATCTCTGTATGGAGAGGGGACACGATGACTTGGAGCAGTTTAAAAAAGTGCATCAATACATAAGTGACCAGCTGTTTACACGATTTgtatgaagtattattatcctactcccatgacactccactcgtaaccttaa #### Dnmbp_ID8857_9 --> 0 - 0 Original Alignment CTAAAAGATGAAGTATTTGAAGAGACAGAAAAGAACTTCCGGATGCAGGAGAGATTGATTAAATCTTTTATCCGAGACCTGTCCCTCTACCTCCAGCATATACGG caaagaggtcagctccaacctctgacagccccatctgccttctctttcagCTGAAAGATGAAGTATTTGAGGAGACAGAGAAAAATTTCCGGATGCAGGAGCGATTGATCAAATCTTTTATTCGAGACCTGTCTCTCTATCTACAGCACATACAGgtactgttttagtggtggcacataacactccatatatttgctttgaccaa Alignment from CESAR CTAAAAGATGAAGTATTTGAAGAGACAGAAAAGAACTTCCGGATGCAGGAGAGATTGATTAAATCTTTTATCCGAGACCTGTCCCTCTACCTCCAGCATATACGG caaagaggtcagctccaacctctgacagccccatctgccttctctttcagCTGAAAGATGAAGTATTTGAGGAGACAGAGAAAAATTTCCGGATGCAGGAGCGATTGATCAAATCTTTTATTCGAGACCTGTCTCTCTATCTACAGCACATACAGgtactgttttagtggtggcacataacactccatatatttgctttgaccaa Alignment from Spaln_aa2Genome CTAAAAGATGAAGTATTTGAAGAGACAGAAAAGAACTTCCGGATGCAGGAGAGATTGATTAAATCTTTTATCCGAGACCTGTCCCTCTACCTCCAGCATATACGG caaagaggtcagctccaacctctgacagccccatctgccttctctttcagCTGAAAGATGAAGTATTTGAGGAGACAGAGAAAAATTTCCGGATGCAGGAGCGATTGATCAAATCTTTTATTCGAGACCTGTCTCTCTATCTACAGCACATACAGgtactgttttagtggtggcacataacactccatatatttgctttgaccaa Alignment from Spaln_nt2Genome CTAAAAGATGAAGTATTTGAAGAGACAGAAAAGAACTTCCGGATGCAGGAGAGATTGATTAAATCTTTTATCCGAGACCTGTCCCTCTACCTCCAGCATATACGG caaagaggtcagctccaacctctgacagccccatctgccttctctttcagCTGAAAGATGAAGTATTTGAGGAGACAGAGAAAAATTTCCGGATGCAGGAGCGATTGATCAAATCTTTTATTCGAGACCTGTCTCTCTATCTACAGCACATACAGgtactgttttagtggtggcacataacactccatatatttgctttgaccaa Alignment from Pairagon CTAAAAGATGAAGTATTTGAAGAGACAGAAAAGAACTTCCGGATGCAGGAGAGATTGATTAAATCTTTTATCCGAGACCTGTCCCTCTACCTCCAGCATATACGG caaagaggtcagctccaacctctgacagccccatctgccttctctttcagCTGAAAGATGAAGTATTTGAGGAGACAGAGAAAAATTTCCGGATGCAGGAGCGATTGATCAAATCTTTTATTCGAGACCTGTCTCTCTATCTACAGCACATACAGgtactgttttagtggtggcacataacactccatatatttgctttgaccaa Alignment from Exonerate_protein2genome CTAAAAGATGAAGTATTTGAAGAGACAGAAAAGAACTTCCGGATGCAGGAGAGATTGATTAAATCTTTTATCCGAGACCTGTCCCTCTACCTCCAGCATATACGG caaagaggtcagctccaacctctgacagccccatctgccttctctttcagCTGAAAGATGAAGTATTTGAGGAGACAGAGAAAAATTTCCGGATGCAGGAGCGATTGATCAAATCTTTTATTCGAGACCTGTCTCTCTATCTACAGCACATACAGgtactgttttagtggtggcacataacactccatatatttgctttgaccaa Alignment from Exonerate_coding2genome CTAAAAGATGAAGTATTTGAAGAGACAGAAAAGAACTTCCGGATGCAGGAGAGATTGATTAAATCTTTTATCCGAGACCTGTCCCTCTACCTCCAGCATATACGG caaagaggtcagctccaacctctgacagccccatctgccttctctttcagCTGAAAGATGAAGTATTTGAGGAGACAGAGAAAAATTTCCGGATGCAGGAGCGATTGATCAAATCTTTTATTCGAGACCTGTCTCTCTATCTACAGCACATACAGgtactgttttagtggtggcacataacactccatatatttgctttgaccaa Alignment from GeneWise CTAAAAGATGAAGTATTTGAAGAGACAGAAAAGAACTTCCGGATGCAGGAGAGATTGATTAAATCTTTTATCCGAGACCTGTCCCTCTACCTCCAGCATATACGG caaagaggtcagctccaacctctgacagccccatctgccttctctttcagCTGAAAGATGAAGTATTTGAGGAGACAGAGAAAAATTTCCGGATGCAGGAGCGATTGATCAAATCTTTTATTCGAGACCTGTCTCTCTATCTACAGCACATACAGgtactgttttagtggtggcacataacactccatatatttgctttgaccaa #### Dnmbp_ID8858_8 --> 2 - 0 Original Alignment tgCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTGAACATACACTCCATCATCAAGAAGTCCAGCCGCGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCGCAG agaggggacaggtgaagtactggtgcccagctgcctctcttctggtccagtgATTAAGTACCGCAAAGGTGATGAAGATAGTCTGATGGAAAAGATTTCCAAGCTCAACATTCACTCAATCATCAAGAAGTCCAGCTGTGTTAGCAGCCACCTAAAACACCTCACTGGCTTTGCTTCACAGgtaagttgtgatttcacttagggtgcatccccacctatagaaagtactgt Alignment from CESAR tgCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTGAACATACACTCCATCATCAAGAAGTCCAGCCGCGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCGCAG agaggggacaggtgaagtactggtgcccagctgcctctcttctggtccagtgATTAAGTACCGCAAAGGTGATGAAGATAGTCTGATGGAAAAGATTTCCAAGCTCAACATTCACTCAATCATCAAGAAGTCCAGCTGTGTTAGCAGCCACCTAAAACACCTCACTGGCTTTGCTTCACAGgtaagttgtgatttcacttagggtgcatccccacctatagaaagtactgt Alignment from Spaln_aa2Genome TGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTGAACATACACTCCATCATCAAGAAGTCCAGCCGCGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCGCAG agaggggacaggtgaagtactggtgcccagctgcctctcttctggtccagTGATTAAGTACCGCAAAGGTGATGAAGATAGTCTGATGGAAAAGATTTCCAAGCTCAACATTCACTCAATCATCAAGAAGTCCAGCTGTGTTAGCAGCCACCTAAAACACCTCACTGGCTTTGCTTCACAGgtaagttgtgatttcacttagggtgcatccccacctatagaaagtactgt Alignment from Spaln_nt2Genome TGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTGAACATACACTCCATCATCAAGAAGTCCAGCCGCGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCGCAG agaggggacaggtgaagtactggtgcccagctgcctctcttctggtccagTGATTAAGTACCGCAAAGGTGATGAAGATAGTCTGATGGAAAAGATTTCCAAGCTCAACATTCACTCAATCATCAAGAAGTCCAGCTGTGTTAGCAGCCACCTAAAACACCTCACTGGCTTTGCTTCACAGgtaagttgtgatttcacttagggtgcatccccacctatagaaagtactgt Alignment from Pairagon TGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTGAACATACACTCCATCATCAAGAAGTCCAGCCGCGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCGCAG agaggggacaggtgaagtactggtgcccagctgcctctcttctggtccagTGATTAAGTACCGCAAAGGTGATGAAGATAGTCTGATGGAAAAGATTTCCAAGCTCAACATTCACTCAATCATCAAGAAGTCCAGCTGTGTTAGCAGCCACCTAAAACACCTCACTGGCTTTGCTTCACAGgtaagttgtgatttcacttagggtgcatccccacctatagaaagtactgt Alignment from Exonerate_protein2genome TGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTGAACATACACTCCATCATCAAGAAGTCCAGCCGCGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCGCAG agaggggacaggtgaagtactggtgcccagctgcctctcttctggtccagTGATTAAGTACCGCAAAGGTGATGAAGATAGTCTGATGGAAAAGATTTCCAAGCTCAACATTCACTCAATCATCAAGAAGTCCAGCTGTGTTAGCAGCCACCTAAAACACCTCACTGGCTTTGCTTCACAGgtaagttgtgatttcacttagggtgcatccccacctatagaaagtactgt Alignment from Exonerate_coding2genome TGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTGAACATACACTCCATCATCAAGAAGTCCAGCCGCGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCGCAG agaggggacaggtgaagtactggtgcccagctgcctctcttctggtccagTGATTAAGTACCGCAAAGGTGATGAAGATAGTCTGATGGAAAAGATTTCCAAGCTCAACATTCACTCAATCATCAAGAAGTCCAGCTGTGTTAGCAGCCACCTAAAACACCTCACTGGCTTTGCTTCACAGgtaagttgtgatttcacttagggtgcatccccacctatagaaagtactgt Alignment from GeneWise TGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTGAACATACACTCCATCATCAAGAAGTCCAGCCGCGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCGCAG agaggggacaggtgaagtactggtgcccagctgcctctcttctggtccagTGATTAAGTACCGCAAAGGTGATGAAGATAGTCTGATGGAAAAGATTTCCAAGCTCAACATTCACTCAATCATCAAGAAGTCCAGCTGTGTTAGCAGCCACCTAAAACACCTCACTGGCTTTGCTTCACAGgtaagttgtgatttcacttagggtgcatccccacctatagaaagtactgt #### Dnmbp_ID8860_6 --> 2 - 2 Original Alignment gaCCCGTGTTTCTTGACCACCGAGACGAGCTTGAGGGAACGTACAGGGTTTACTGCCAGAACCACGATGAAGCCATCTCCCTGCTGGAAATGTATGAGAAGGACGAGAAGACCCAGAAGCACCTTCAGGACTACCTGGCAGATCTCaa atggaccatggtccagacagtatgcagaggtcccggtcccccttccacaggaCCAGTGTTTCTTGACCACAGAGATGAACTAGAGGGAACATACAGGGTCTACTGTCAAAACCATGAGGAAGCTATCTCCTTGCTAGAAATGTATGAGAAGGATGAGAAAACTCCAAGGCACTTGCAGGACTACTTGGCAGATATCaagtgagctgagtgattaaaaccatatgagaccaaggcccaataagaaatag Alignment from CESAR gaCCCGTGTTTCTTGACCACCGAGACGAGCTTGAGGGAACGTACAGGGTTTACTGCCAGAACCACGATGAAGCCATCTCCCTGCTGGAAATGTATGAGAAGGACGAGAAGACCCAGAAGCACCTTCAGGACTACCTGGCAGATCTCaa atggaccatggtccagacagtatgcagaggtcccggtcccccttccacaggaCCAGTGTTTCTTGACCACAGAGATGAACTAGAGGGAACATACAGGGTCTACTGTCAAAACCATGAGGAAGCTATCTCCTTGCTAGAAATGTATGAGAAGGATGAGAAAACTCCAAGGCACTTGCAGGACTACTTGGCAGATATCaagtgagctgagtgattaaaaccatatgagaccaaggcccaataagaaatag Alignment from Spaln_aa2Genome GACCCGTGTTTCTTGACCACCGAGACGAGCTTGAGGGAACGTACAGGGTTTACTGCCAGAACCACGATGAAGCCATCTCCCTGCTGGAAATGTATGAGAAGGACGAGAAGACCCAGAAGCACCTTCAGGACTACCTGGCAGATCTCAA atggaccatggtccagacagtatgcagaggtcccggtcccccttccacagGACCAGTGTTTCTTGACCACAGAGATGAACTAGAGGGAACATACAGGGTCTACTGTCAAAACCATGAGGAAGCTATCTCCTTGCTAGAAATGTATGAGAAGGATGAGAAAACTCCAAGGCACTTGCAGGACTACTTGGCAGATATCAAgtgagctgagtgattaaaaccatatgagaccaaggcccaataagaaatag Alignment from Spaln_nt2Genome GACCCGTGTTTCTTGACCACCGAGACGAGCTTGAGGGAACGTACAGGGTTTACTGCCAGAACCACGATGAAGCCATCTCCCTGCTGGAAATGTATGAGAAGGACGAGAAGACCCAGAAGCACCTTCAGGACTACCTGGCAGATCTCAA atggaccatggtccagacagtatgcagaggtcccggtcccccttccacagGACCAGTGTTTCTTGACCACAGAGATGAACTAGAGGGAACATACAGGGTCTACTGTCAAAACCATGAGGAAGCTATCTCCTTGCTAGAAATGTATGAGAAGGATGAGAAAACTCCAAGGCACTTGCAGGACTACTTGGCAGATATCAAgtgagctgagtgattaaaaccatatgagaccaaggcccaataagaaatag Alignment from Pairagon GACCCGTGTTTCTTGACCACCGAGACGAGCTTGAGGGAACGTACAGGGTTTACTGCCAGAACCACGATGAAGCCATCTCCCTGCTGGAAATGTATGAGAAGGACGAGAAGACCCAGAAGCACCTTCAGGACTACCTGGCAGATCTCAA atggaccatggtccagacagtatgcagaggtcccggtcccccttccacagGACCAGTGTTTCTTGACCACAGAGATGAACTAGAGGGAACATACAGGGTCTACTGTCAAAACCATGAGGAAGCTATCTCCTTGCTAGAAATGTATGAGAAGGATGAGAAAACTCCAAGGCACTTGCAGGACTACTTGGCAGATATCAAgtgagctgagtgattaaaaccatatgagaccaaggcccaataagaaatag Alignment from Exonerate_protein2genome GACCCGTGTTTCTTGACCACCGAGACGAGCTTGAGGGAACGTACAGGGTTTACTGCCAGAACCACGATGAAGCCATCTCCCTGCTGGAAATGTATGAGAAGGACGAGAAGACCCAGAAGCACCTTCAGGACTACCTGGCAGATCTCAA atggaccatggtccagacagtatgcagaggtcccggtcccccttccacagGACCAGTGTTTCTTGACCACAGAGATGAACTAGAGGGAACATACAGGGTCTACTGTCAAAACCATGAGGAAGCTATCTCCTTGCTAGAAATGTATGAGAAGGATGAGAAAACTCCAAGGCACTTGCAGGACTACTTGGCAGATATCAAgtgagctgagtgattaaaaccatatgagaccaaggcccaataagaaatag Alignment from Exonerate_coding2genome GACCCGTGTTTCTTGACCACCGAGACGAGCTTGAGGGAACGTACAGGGTTTACTGCCAGAACCACGATGAAGCCATCTCCCTGCTGGAAATGTATGAGAAGGACGAGAAGACCCAGAAGCACCTTCAGGACTACCTGGCAGATCTCAA atggaccatggtccagacagtatgcagaggtcccggtcccccttccacagGACCAGTGTTTCTTGACCACAGAGATGAACTAGAGGGAACATACAGGGTCTACTGTCAAAACCATGAGGAAGCTATCTCCTTGCTAGAAATGTATGAGAAGGATGAGAAAACTCCAAGGCACTTGCAGGACTACTTGGCAGATATCAAgtgagctgagtgattaaaaccatatgagaccaaggcccaataagaaatag Alignment from GeneWise GACCCGTGTTTCTTGACCACCGAGACGAGCTTGAGGGAACGTACAGGGTTTACTGCCAGAACCACGATGAAGCCATCTCCCTGCTGGAAATGTATGAGAAGGACGAGAAGACCCAGAAGCACCTTCAGGACTACCTGGCAGATCTCAA atggaccatggtccagacagtatgcagaggtcccggtcccccttccacagGACCAGTGTTTCTTGACCACAGAGATGAACTAGAGGGAACATACAGGGTCTACTGTCAAAACCATGAGGAAGCTATCTCCTTGCTAGAAATGTATGAGAAGGATGAGAAAACTCCAAGGCACTTGCAGGACTACTTGGCAGATATCAAgtgagctgagtgattaaaaccatatgagaccaaggcccaataagaaatag #### Dnmbp_ID8862_4 --> 2 - 0 Original Alignment acATGACGCTCCTCTCTTCCCAGTCTTCATCCCTGGCGGCCCCCTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGCTGGAGAAGAGAGCCAAGGTGGTGGCGGAGCTTTTGCAGACGGAGAGAGACTACATCCGGGATCTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAGGCACAG ttctcttttgattggtatcagcactccttacggttgttcctgacccacagacATGATGCTCCTCATTTCCCAGTCTACATCCTTGGCAGCCCCTTTTGGGTCTGTCTCTATTGAGAACCCAGAGCAAAGGATGTTGGAAAAGAGGGCCAAAGTGATAGCTGAACTATTGCAGATGGAGAGAGACTACATCCGGGATTTGGAGATGTGCATTGAGCAAGTCATGGTACCCTTACAACAAACACAGgttagtgacacggagtggccaaaggatcttcagccaccaatatatggaag Alignment from CESAR acATGACGCTCCTCTCTTCCCAGTCTTCATCCCTGGCGGCCCCCTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGCTGGAGAAGAGAGCCAAGGTGGTGGCGGAGCTTTTGCAGACGGAGAGAGACTACATCCGGGATCTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAGGCACAG ttctcttttgattggtatcagcactccttacggttgttcctgacccacagacATGATGCTCCTCATTTCCCAGTCTACATCCTTGGCAGCCCCTTTTGGGTCTGTCTCTATTGAGAACCCAGAGCAAAGGATGTTGGAAAAGAGGGCCAAAGTGATAGCTGAACTATTGCAGATGGAGAGAGACTACATCCGGGATTTGGAGATGTGCATTGAGCAAGTCATGGTACCCTTACAACAAACACAGgttagtgacacggagtggccaaaggatcttcagccaccaatatatggaag Alignment from Spaln_aa2Genome ACATGACGCTCCTCTCTTCCCAGTCTTCATCCCTGGCGGCCCCCTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGCTGGAGAAGAGAGCCAAGGTGGTGGCGGAGCTTTTGCAGACGGAGAGAGACTACATCCGGGATCTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAGGCACAG ttctcttttgattggtatcagcactccttacggttgttcctgacccacagACATGATGCTCCTCATTTCCCAGTCTACATCCTTGGCAGCCCCTTTTGGGTCTGTCTCTATTGAGAACCCAGAGCAAAGGATGTTGGAAAAGAGGGCCAAAGTGATAGCTGAACTATTGCAGATGGAGAGAGACTACATCCGGGATTTGGAGATGTGCATTGAGCAAGTCATGGTACCCTTACAACAAACACAGgttagtgacacggagtggccaaaggatcttcagccaccaatatatggaag Alignment from Spaln_nt2Genome ACATGACGCTCCTCTCTTCCCAGTCTTCATCCCTGGCGGCCCCCTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGCTGGAGAAGAGAGCCAAGGTGGTGGCGGAGCTTTTGCAGACGGAGAGAGACTACATCCGGGATCTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAGGCACAG ttctcttttgattggtatcagcactccttacggttgttcctgacccacagACATGATGCTCCTCATTTCCCAGTCTACATCCTTGGCAGCCCCTTTTGGGTCTGTCTCTATTGAGAACCCAGAGCAAAGGATGTTGGAAAAGAGGGCCAAAGTGATAGCTGAACTATTGCAGATGGAGAGAGACTACATCCGGGATTTGGAGATGTGCATTGAGCAAGTCATGGTACCCTTACAACAAACACAGgttagtgacacggagtggccaaaggatcttcagccaccaatatatggaag Alignment from Pairagon ACATGACGCTCCTCTCTTCCCAGTCTTCATCCCTGGCGGCCCCCTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGCTGGAGAAGAGAGCCAAGGTGGTGGCGGAGCTTTTGCAGACGGAGAGAGACTACATCCGGGATCTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAGGCACAG ttctcttttgattggtatcagcactccttacggttgttcctgacccacagACATGATGCTCCTCATTTCCCAGTCTACATCCTTGGCAGCCCCTTTTGGGTCTGTCTCTATTGAGAACCCAGAGCAAAGGATGTTGGAAAAGAGGGCCAAAGTGATAGCTGAACTATTGCAGATGGAGAGAGACTACATCCGGGATTTGGAGATGTGCATTGAGCAAGTCATGGTACCCTTACAACAAACACAGgttagtgacacggagtggccaaaggatcttcagccaccaatatatggaag Alignment from Exonerate_protein2genome ACATGACGCTCCTCTCTTCCCAGTCTTCATCCCTGGCGGCCCCCTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGCTGGAGAAGAGAGCCAAGGTGGTGGCGGAGCTTTTGCAGACGGAGAGAGACTACATCCGGGATCTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAGGCACAG ttctcttttgattggtatcagcactccttacggttgttcctgacccacagACATGATGCTCCTCATTTCCCAGTCTACATCCTTGGCAGCCCCTTTTGGGTCTGTCTCTATTGAGAACCCAGAGCAAAGGATGTTGGAAAAGAGGGCCAAAGTGATAGCTGAACTATTGCAGATGGAGAGAGACTACATCCGGGATTTGGAGATGTGCATTGAGCAAGTCATGGTACCCTTACAACAAACACAGgttagtgacacggagtggccaaaggatcttcagccaccaatatatggaag Alignment from Exonerate_coding2genome ACATGACGCTCCTCTCTTCCCAGTCTTCATCCCTGGCGGCCCCCTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGCTGGAGAAGAGAGCCAAGGTGGTGGCGGAGCTTTTGCAGACGGAGAGAGACTACATCCGGGATCTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAGGCACAG ttctcttttgattggtatcagcactccttacggttgttcctgacccacagACATGATGCTCCTCATTTCCCAGTCTACATCCTTGGCAGCCCCTTTTGGGTCTGTCTCTATTGAGAACCCAGAGCAAAGGATGTTGGAAAAGAGGGCCAAAGTGATAGCTGAACTATTGCAGATGGAGAGAGACTACATCCGGGATTTGGAGATGTGCATTGAGCAAGTCATGGTACCCTTACAACAAACACAGgttagtgacacggagtggccaaaggatcttcagccaccaatatatggaag Alignment from GeneWise ACATGACGCTCCTCTCTTCCCAGTCTTCATCCCTGGCGGCCCCCTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGCTGGAGAAGAGAGCCAAGGTGGTGGCGGAGCTTTTGCAGACGGAGAGAGACTACATCCGGGATCTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAGGCACAG ttctcttttgattggtatcagcactccttacggttgttcctgacccacagACATGATGCTCCTCATTTCCCAGTCTACATCCTTGGCAGCCCCTTTTGGGTCTGTCTCTATTGAGAACCCAGAGCAAAGGATGTTGGAAAAGAGGGCCAAAGTGATAGCTGAACTATTGCAGATGGAGAGAGACTACATCCGGGATTTGGAGATGTGCATTGAGCAAGTCATGGTACCCTTACAACAAACACAGgttagtgacacggagtggccaaaggatcttcagccaccaatatatggaag #### Dntt_ID8076_2 --> 1 - 0 Original Alignment tGATTCGGTCACCCACATTGTGGCAGAGAACAACTCAGGGTCAGACGTCCTGGAGTGGCTCCAGCTGCAGAACATCAAAGCCAGCTCCGAGCTCGAACTCTTGGACATCTCCTGGCTCATCGAATGCATGGGAGCTGGGAAGCCAGTGGAGATGATGGGGAGACATCAGCTTGTT tgcatgtcatcacatcttggatgtggattaatttctcttttgcatatcagtGACTCAGTCAGCCACATTGTAGTGGAGAACAACTCAGGGACAGACATCCTTGAATGG---------CAA------------AGTTGCAAGCTGGAGCTCTTGGAAATCTCCTGGCTGATTGAATGTATGGGAGCTGGGAAACCATCAGAGATGATGGGGAGACATCAGTTGGTAgtaagtcttttccatccagcaaagacatagaattgacacaggataaacag Alignment from CESAR tGATTCGGTCACCCACATTGTGGCAGAGAACAACTCAGGGTCAGACGTCCTGGAGTGGCTCCAGCTGCAGAACATCAAAGCCAGCTCCGAGCTCGAACTCTTGGACATCTCCTGGCTCATCGAATGCATGGGAGCTGGGAAGCCAGTGGAGATGATGGGGAGACATCAGCTTGTT tgcatgtcatcacatcttggatgtggattaatttctcttttgcatatcagtGACTCAGTCAGCCACATTGTAGTGGAGAACAACTCAGGGACAGACATCCTTGAATGGCAA---------------------AGTTGCAAGCTGGAGCTCTTGGAAATCTCCTGGCTGATTGAATGTATGGGAGCTGGGAAACCATCAGAGATGATGGGGAGACATCAGTTGGTAgtaagtcttttccatccagcaaagacatagaattgacacaggataaacag Alignment from Spaln_aa2Genome TGATTCGGTCACCCACATTGTGGCAGAGAACAACTCAGGGTCAGACGTCCTGGAGTGGCTCCAGCTGCAGAACATCAAAGCCAGCTCCGAGCTCGAACTCTTGGACATCTCCTGGCTCATCGAATGCATGGGAGCTGGGAAGCCAGTGGAGATGATGGGGAGACATCAGCTTGTT tgcatgtcatcacatcttggatgtggattaatttctcttttgcatatcagTGACTCAGTCAGCCACATTGTAGTGGAGAACAACTCAGGGACAGACATCCTTGAATGG---------------------CAAAGTTGCAAGCTGGAGCTCTTGGAAATCTCCTGGCTGATTGAATGTATGGGAGCTGGGAAACCATCAGAGATGATGGGGAGACATCAGTTGGTAgtaagtcttttccatccagcaaagacatagaattgacacaggataaacag Alignment from Spaln_nt2Genome TGATTCGGTCACCCACATTGTGGCAGAGAACAACTCAGGGTCAGACGTCCTGGAGTGGCTCCAGCTGCAGAACATCAAAGCCAGCTCCGAGCTCGAACTCTTGGACATCTCCTGGCTCATCGAATGCATGGGAGCTGGGAAGCCAGTGGAGATGATGGGGAGACATCAGCTTGTT tgcatgtcatcacatcttggatgtggattaatttctcttttgcatatcagTGACTCAGTCAGCCACATTGTAGTGGAGAACAACTCAGGGACAGACATCCTTGAATGGC------------------AA---AGTTGCAAGCTGGAGCTCTTGGAAATCTCCTGGCTGATTGAATGTATGGGAGCTGGGAAACCATCAGAGATGATGGGGAGACATCAGTTGGTAgtaagtcttttccatccagcaaagacatagaattgacacaggataaacag Alignment from Pairagon TGATTCGGTCACCCACATTGTGGCAGAGAACAACTCAGGGTCAGACGTCCTGGAGTGGCTCCAGCTGCAGAACATCAAAGCCAGCTCCGAGCTCGAACTCTTGGACATCTCCTGGCTCATCGAATGCATGGGAGCTGGGAAGCCAGTGGAGATGATGGGGAGACATCAGCTTGTT tgcatgtcatcacatcttggatgtggattaatttctcttttgcatatcagTGACTCAGTCAGCCACATTGTAGTGGAGAACAACTCAGGGACAGACATCCTTGAATGGC---------------------AAAGTTGCAAGCTGGAGCTCTTGGAAATCTCCTGGCTGATTGAATGTATGGGAGCTGGGAAACCATCAGAGATGATGGGGAGACATCAGTTGGTAgtaagtcttttccatccagcaaagacatagaattgacacaggataaacag Alignment from Exonerate_protein2genome TGATTCGGTCACCCACATTGTGGCAGAGAACAACTCAGGGTCAGACGTCCTGGAGTGG------CTCCAGCTGCAGAACATCAAAGCCAGCTCCGAGCTCGAACTCTTGGACATCTCCTGGCTCATCGAATGCATGGGAGCTGGGAAGCCAGTG tgcatgtcatcacatcttggatgtggattaatttctcttttgcatatcagTGACTCAGTCAGCCACATTGTAGTGGAGAACAACTCAGGGACAGACATCCTTGAATGGCAAAGTTGCAAGCTGGAGCTCTTGGAAATCTCCTGGCTGATTGAATGTATGGGAGCTGGGAAACCATCAGAGATGATGGGGAGACATCAGTTGGTAgtaagtcttttccatccagcaaagacatagaattgacacaggataaacag Alignment from Exonerate_coding2genome TGATTCGGTCACCCACATTGTGGCAGAGAACAACTCAGGGTCAGACGTCCTGGAGTGG------CTCCAGCTGCAGAACATCAAAGCCAGCTCCGAGCTCGAACTCTTGGACATCTCCTGGCTCATCGAATGCATGGGAGCTGGGAAGCCAGTG tgcatgtcatcacatcttggatgtggattaatttctcttttgcatatcagTGACTCAGTCAGCCACATTGTAGTGGAGAACAACTCAGGGACAGACATCCTTGAATGGCAAAGTTGCAAGCTGGAGCTCTTGGAAATCTCCTGGCTGATTGAATGTATGGGAGCTGGGAAACCATCAGAGATGATGGGGAGACATCAGTTGGTAgtaagtcttttccatccagcaaagacatagaattgacacaggataaacag Alignment from GeneWise TGATTCGGTCACCCACATTGTGGCAGAGAACAACTCAGGGTCAGACGTCCTGGAGTGGCTCCAGCTGCAGAACATCAAAGCCAGCTCCGAGCTCGAACTCTTGGACATCTCCTGGCTCATCGAATGCATGGGAGCTGGGAAGCCAGTGGAGATGATGGGGAGACATCAGCTTGTT tgcatgtcatcacatcttggatgtggattaatttctcttttgcatatcagTGACTCAGTCAGCCACATTGTAGTGGAGAACAACTCAGGGACAGACATCCTTGAATGG---------------------CAAAGTTGCAAGCTGGAGCTCTTGGAAATCTCCTGGCTGATTGAATGTATGGGAGCTGGGAAACCATCAGAGATGATGGGGAGACATCAGTTGGTAgtaagtcttttccatccagcaaagacatagaattgacacaggataaacag #### Dntt_ID8081_7 --> 2 - 2 Original Alignment gaTTCCTCTACTACGAAGACCTCGTTAGCTGTGTGAACAGGCCAGAAGCCGAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACCATGACTGGGGGGTTCCGCag tcccctactggcatttaatccccctattatgacccctcctcccatcctaggcTTCCAGTATTACGAAGACCTTGTTAGTTGTGTGAACAGGCCAGAAGCCAAGGCTGTCAGCATGCTAGTTAAGGAGGTGGTTGTGACATTTCTGCCAGATGCCTTGGTCACAATGATTGGCGGGTTCCACaggtaaacgatgtgacgtcatttctgcacttatattttcttattcttctgag Alignment from CESAR gaTTCCTCTACTACGAAGACCTCGTTAGCTGTGTGAACAGGCCAGAAGCCGAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACCATGACTGGGGGGTTCCGCag tcccctactggcatttaatccccctattatgacccctcctcccatcctaggcTTCCAGTATTACGAAGACCTTGTTAGTTGTGTGAACAGGCCAGAAGCCAAGGCTGTCAGCATGCTAGTTAAGGAGGTGGTTGTGACATTTCTGCCAGATGCCTTGGTCACAATGATTGGCGGGTTCCACaggtaaacgatgtgacgtcatttctgcacttatattttcttattcttctgag Alignment from Spaln_aa2Genome GATTCCTCTACTACGAAGACCTCGTTAGCTGTGTGAACAGGCCAGAAGCCGAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACCATGACTGGGGGGTTCCGCAG tcccctactggcatttaatccccctattatgacccctcctcccatcctagGCTTCCAGTATTACGAAGACCTTGTTAGTTGTGTGAACAGGCCAGAAGCCAAGGCTGTCAGCATGCTAGTTAAGGAGGTGGTTGTGACATTTCTGCCAGATGCCTTGGTCACAATGATTGGCGGGTTCCACAGgtaaacgatgtgacgtcatttctgcacttatattttcttattcttctgag Alignment from Spaln_nt2Genome GATTCCTCTACTACGAAGACCTCGTTAGCTGTGTGAACAGGCCAGAAGCCGAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACCATGACTGGGGGGTTCCGCAG tcccctactggcatttaatccccctattatgacccctcctcccatcctagGCTTCCAGTATTACGAAGACCTTGTTAGTTGTGTGAACAGGCCAGAAGCCAAGGCTGTCAGCATGCTAGTTAAGGAGGTGGTTGTGACATTTCTGCCAGATGCCTTGGTCACAATGATTGGCGGGTTCCACAGgtaaacgatgtgacgtcatttctgcacttatattttcttattcttctgag Alignment from Pairagon GATTCCTCTACTACGAAGACCTCGTTAGCTGTGTGAACAGGCCAGAAGCCGAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACCATGACTGGGGGGTTCCGCAG tcccctactggcatttaatccccctattatgacccctcctcccatcctagGCTTCCAGTATTACGAAGACCTTGTTAGTTGTGTGAACAGGCCAGAAGCCAAGGCTGTCAGCATGCTAGTTAAGGAGGTGGTTGTGACATTTCTGCCAGATGCCTTGGTCACAATGATTGGCGGGTTCCACAGgtaaacgatgtgacgtcatttctgcacttatattttcttattcttctgag Alignment from Exonerate_protein2genome GATTCCTCTACTACGAAGACCTCGTTAGCTGTGTGAACAGGCCAGAAGCCGAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACCATGACTGGGGGGTTCCGCAG tcccctactggcatttaatccccctattatgacccctcctcccatcctagGCTTCCAGTATTACGAAGACCTTGTTAGTTGTGTGAACAGGCCAGAAGCCAAGGCTGTCAGCATGCTAGTTAAGGAGGTGGTTGTGACATTTCTGCCAGATGCCTTGGTCACAATGATTGGCGGGTTCCACAGgtaaacgatgtgacgtcatttctgcacttatattttcttattcttctgag Alignment from Exonerate_coding2genome GATTCCTCTACTACGAAGACCTCGTTAGCTGTGTGAACAGGCCAGAAGCCGAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACCATGACTGGGGGGTTCCGCAG tcccctactggcatttaatccccctattatgacccctcctcccatcctagGCTTCCAGTATTACGAAGACCTTGTTAGTTGTGTGAACAGGCCAGAAGCCAAGGCTGTCAGCATGCTAGTTAAGGAGGTGGTTGTGACATTTCTGCCAGATGCCTTGGTCACAATGATTGGCGGGTTCCACAGgtaaacgatgtgacgtcatttctgcacttatattttcttattcttctgag Alignment from GeneWise GATTCCTCTACTACGAAGACCTCGTTAGCTGTGTGAACAGGCCAGAAGCCGAGGCTGTCAGCATGCTAGTTAAGGAGGCGGTTGTGACATTTCTTCCAGATGCCTTGGTCACCATGACTGGGGGGTTCCGCAG tcccctactggcatttaatccccctattatgacccctcctcccatcctagGCTTCCAGTATTACGAAGACCTTGTTAGTTGTGTGAACAGGCCAGAAGCCAAGGCTGTCAGCATGCTAGTTAAGGAGGTGGTTGTGACATTTCTGCCAGATGCCTTGGTCACAATGATTGGCGGGTTCCACAGgtaaacgatgtgacgtcatttctgcacttatattttcttattcttctgag #### Dock8_ID5391_14 --> 2 - 2 Original Alignment gcTCACTGAGGCTGGAGATATCCCCAGCTCCCGACGTGATGAACTGCTGCCTGACGCCCGAGATGCTGCCAGTCAAACCTTTTCCTGAAAATCGGACGCGTCCACACAAGGAGATTTTGGAATTTCCGATCCGGGAGGTGTACGTCCCTCACACTGTGTACag tacatgccaagctcccctaattccacgttgccctgtctcctctactacagggACATTGAGACTGGAGATATCCCCAGCTCCTGATCTGATGAACTGCTGCTTGACAACTGAGATGCTGCCAGTCAAACCGTTTTCAGAAAACCGTAAACACATGCACAAAGAGATATTGGAATTTCCAATCCAGGAGGTGTATGTGCCTCACACTGTGTATaggtaagatataggaacatgcaaaatatcagcctttggatttgatactaaaa Alignment from CESAR gcTCACTGAGGCTGGAGATATCCCCAGCTCCCGACGTGATGAACTGCTGCCTGACGCCCGAGATGCTGCCAGTCAAACCTTTTCCTGAAAATCGGACGCGTCCACACAAGGAGATTTTGGAATTTCCGATCCGGGAGGTGTACGTCCCTCACACTGTGTACag tacatgccaagctcccctaattccacgttgccctgtctcctctactacagggACATTGAGACTGGAGATATCCCCAGCTCCTGATCTGATGAACTGCTGCTTGACAACTGAGATGCTGCCAGTCAAACCGTTTTCAGAAAACCGTAAACACATGCACAAAGAGATATTGGAATTTCCAATCCAGGAGGTGTATGTGCCTCACACTGTGTATaggtaagatataggaacatgcaaaatatcagcctttggatttgatactaaaa Alignment from Spaln_aa2Genome GCTCACTGAGGCTGGAGATATCCCCAGCTCCCGACGTGATGAACTGCTGCCTGACGCCCGAGATGCTGCCAGTCAAACCTTTTCCTGAAAATCGGACGCGTCCACACAAGGAGATTTTGGAATTTCCGATCCGGGAGGTGTACGTCCCTCACACTGTGTACAG tacatgccaagctcccctaattccacgttgccctgtctcctctactacagGGACATTGAGACTGGAGATATCCCCAGCTCCTGATCTGATGAACTGCTGCTTGACAACTGAGATGCTGCCAGTCAAACCGTTTTCAGAAAACCGTAAACACATGCACAAAGAGATATTGGAATTTCCAATCCAGGAGGTGTATGTGCCTCACACTGTGTATAGgtaagatataggaacatgcaaaatatcagcctttggatttgatactaaaa Alignment from Spaln_nt2Genome GCTCACTGAGGCTGGAGATATCCCCAGCTCCCGACGTGATGAACTGCTGCCTGACGCCCGAGATGCTGCCAGTCAAACCTTTTCCTGAAAATCGGACGCGTCCACACAAGGAGATTTTGGAATTTCCGATCCGGGAGGTGTACGTCCCTCACACTGTGTACAG tacatgccaagctcccctaattccacgttgccctgtctcctctactacagGGACATTGAGACTGGAGATATCCCCAGCTCCTGATCTGATGAACTGCTGCTTGACAACTGAGATGCTGCCAGTCAAACCGTTTTCAGAAAACCGTAAACACATGCACAAAGAGATATTGGAATTTCCAATCCAGGAGGTGTATGTGCCTCACACTGTGTATAGgtaagatataggaacatgcaaaatatcagcctttggatttgatactaaaa Alignment from Pairagon GCTCACTGAGGCTGGAGATATCCCCAGCTCCCGACGTGATGAACTGCTGCCTGACGCCCGAGATGCTGCCAGTCAAACCTTTTCCTGAAAATCGGACGCGTCCACACAAGGAGATTTTGGAATTTCCGATCCGGGAGGTGTACGTCCCTCACACTGTGTACAG tacatgccaagctcccctaattccacgttgccctgtctcctctactacagGGACATTGAGACTGGAGATATCCCCAGCTCCTGATCTGATGAACTGCTGCTTGACAACTGAGATGCTGCCAGTCAAACCGTTTTCAGAAAACCGTAAACACATGCACAAAGAGATATTGGAATTTCCAATCCAGGAGGTGTATGTGCCTCACACTGTGTATAGgtaagatataggaacatgcaaaatatcagcctttggatttgatactaaaa Alignment from Exonerate_protein2genome GCTCACTGAGGCTGGAGATATCCCCAGCTCCCGACGTGATGAACTGCTGCCTGACGCCCGAGATGCTGCCAGTCAAACCTTTTCCTGAAAATCGGACGCGTCCACACAAGGAGATTTTGGAATTTCCGATCCGGGAGGTGTACGTCCCTCACACTGTGTACAG tacatgccaagctcccctaattccacgttgccctgtctcctctactacagGGACATTGAGACTGGAGATATCCCCAGCTCCTGATCTGATGAACTGCTGCTTGACAACTGAGATGCTGCCAGTCAAACCGTTTTCAGAAAACCGTAAACACATGCACAAAGAGATATTGGAATTTCCAATCCAGGAGGTGTATGTGCCTCACACTGTGTATAGgtaagatataggaacatgcaaaatatcagcctttggatttgatactaaaa Alignment from Exonerate_coding2genome GCTCACTGAGGCTGGAGATATCCCCAGCTCCCGACGTGATGAACTGCTGCCTGACGCCCGAGATGCTGCCAGTCAAACCTTTTCCTGAAAATCGGACGCGTCCACACAAGGAGATTTTGGAATTTCCGATCCGGGAGGTGTACGTCCCTCACACTGTGTACAG tacatgccaagctcccctaattccacgttgccctgtctcctctactacagGGACATTGAGACTGGAGATATCCCCAGCTCCTGATCTGATGAACTGCTGCTTGACAACTGAGATGCTGCCAGTCAAACCGTTTTCAGAAAACCGTAAACACATGCACAAAGAGATATTGGAATTTCCAATCCAGGAGGTGTATGTGCCTCACACTGTGTATAGgtaagatataggaacatgcaaaatatcagcctttggatttgatactaaaa Alignment from GeneWise GCTCACTGAGGCTGGAGATATCCCCAGCTCCCGACGTGATGAACTGCTGCCTGACGCCCGAGATGCTGCCAGTCAAACCTTTTCCTGAAAATCGGACGCGTCCACACAAGGAGATTTTGGAATTTCCGATCCGGGAGGTGTACGTCCCTCACACTGTGTACAG tacatgccaagctcccctaattccacgttgccctgtctcctctactacagGGACATTGAGACTGGAGATATCCCCAGCTCCTGATCTGATGAACTGCTGCTTGACAACTGAGATGCTGCCAGTCAAACCGTTTTCAGAAAACCGTAAACACATGCACAAAGAGATATTGGAATTTCCAATCCAGGAGGTGTATGTGCCTCACACTGTGTATAGgtaagatataggaacatgcaaaatatcagcctttggatttgatactaaaa #### Dock8_ID5397_18 --> 0 - 0 Original Alignment TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG tcagtttgggttgctagtctgtatccatggttcttgttttgtttttgaagTGGCTACCAATTCTGTTAAAAGAACGCCTCCAAACCGGATCTTACTGTCTGCCTGTTACCCTGGAAAAGCTCCCGCCTAACTACTCCATTCATTCAGCTGAGgtgagtagcagtgacgcagtggtcaagtatccagcccttcatcgcactgt Alignment from CESAR TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG tcagtttgggttgctagtctgtatccatggttcttgttttgtttttgaagTGGCTACCAATTCTGTTAAAAGAACGCCTCCAAACCGGATCTTACTGTCTGCCTGTTACCCTGGAAAAGCTCCCGCCTAACTACTCCATTCATTCAGCTGAGgtgagtagcagtgacgcagtggtcaagtatccagcccttcatcgcactgt Alignment from Spaln_aa2Genome TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG tcagtttgggttgctagtctgtatccatggttcttgttttgtttttgaagTGGCTACCAATTCTGTTAAAAGAACGCCTCCAAACCGGATCTTACTGTCTGCCTGTTACCCTGGAAAAGCTCCCGCCTAACTACTCCATTCATTCAGCTGAGgtgagtagcagtgacgcagtggtcaagtatccagcccttcatcgcactgt Alignment from Spaln_nt2Genome TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG tcagtttgggttgctagtctgtatccatggttcttgttttgtttttgaagTGGCTACCAATTCTGTTAAAAGAACGCCTCCAAACCGGATCTTACTGTCTGCCTGTTACCCTGGAAAAGCTCCCGCCTAACTACTCCATTCATTCAGCTGAGgtgagtagcagtgacgcagtggtcaagtatccagcccttcatcgcactgt Alignment from Pairagon TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG tcagtttgggttgctagtctgtatccatggttcttgttttgtttttgaagTGGCTACCAATTCTGTTAAAAGAACGCCTCCAAACCGGATCTTACTGTCTGCCTGTTACCCTGGAAAAGCTCCCGCCTAACTACTCCATTCATTCAGCTGAGgtgagtagcagtgacgcagtggtcaagtatccagcccttcatcgcactgt Alignment from Exonerate_protein2genome TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG tcagtttgggttgctagtctgtatccatggttcttgttttgtttttgaagTGGCTACCAATTCTGTTAAAAGAACGCCTCCAAACCGGATCTTACTGTCTGCCTGTTACCCTGGAAAAGCTCCCGCCTAACTACTCCATTCATTCAGCTGAGgtgagtagcagtgacgcagtggtcaagtatccagcccttcatcgcactgt Alignment from Exonerate_coding2genome TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG tcagtttgggttgctagtctgtatccatggttcttgttttgtttttgaagTGGCTACCAATTCTGTTAAAAGAACGCCTCCAAACCGGATCTTACTGTCTGCCTGTTACCCTGGAAAAGCTCCCGCCTAACTACTCCATTCATTCAGCTGAGgtgagtagcagtgacgcagtggtcaagtatccagcccttcatcgcactgt Alignment from GeneWise TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG tcagtttgggttgctagtctgtatccatggttcttgttttgtttttgaagTGGCTACCAATTCTGTTAAAAGAACGCCTCCAAACCGGATCTTACTGTCTGCCTGTTACCCTGGAAAAGCTCCCGCCTAACTACTCCATTCATTCAGCTGAGgtgagtagcagtgacgcagtggtcaagtatccagcccttcatcgcactgt #### Dock8_ID5407_26 --> 0 - 0 Original Alignment GAAAGCGAGCAGGCAGAAAAGATCAACATCAGCCTTGCCTTCTTCCTGTATGACCTCCTGTCAATCATGGACAGAGGCTTCGTGTTCAACCTCATCAAGCATTACTGCAGCCAG tgtcacctcagtcaagcagtgtgttatatcttctttttggggctctgtagGAGAGCAAGCCACCAGAGAAAATCAACATAAGCCTGTCATTCTTCTTGTATGCACTCCTATCAATAATAGACAGGGGCTTAGTGTTCAAC---CTCAAACATTACTGTAGCCAAgtaggtctctaggggcagatcatcctgactgcactgctgggactgtgaga Alignment from CESAR GAAAGCGAGCAGGCAGAAAAGATCAACATCAGCCTTGCCTTCTTCCTGTATGACCTCCTGTCAATCATGGACAGAGGCTTCGTGTTCAACCTCATCAAGCATTACTGCAGCCAG tgtcacctcagtcaagcagtgtgttatatcttctttttggggctctgtagGAGAGCAAGCCACCAGAGAAAATCAACATAAGCCTGTCATTCTTCTTGTATGCACTCCTATCAATAATAGACAGGGGCTTAGTGTTCAACCTC---AAACATTACTGTAGCCAAgtaggtctctaggggcagatcatcctgactgcactgctgggactgtgaga Alignment from Spaln_aa2Genome GAAAGCGAGCAGGCAGAAAAGATCAACATCAGCCTTGCCTTCTTCCTGTATGACCTCCTGTCAATCATGGACAGAGGCTTCGTGTTCAACCTCATCAAGCATTACTGCAGCCAG tgtcacctcagtcaagcagtgtgttatatcttctttttggggctctgtagGAGAGCAAGCCACCAGAGAAAATCAACATAAGCCTGTCATTCTTCTTGTATGCACTCCTATCAATAATAGACAGGGGCTTAGTGTTCAACCTC---AAACATTACTGTAGCCAAgtaggtctctaggggcagatcatcctgactgcactgctgggactgtgaga Alignment from Spaln_nt2Genome GAAAGCGAGCAGGCAGAAAAGATCAACATCAGCCTTGCCTTCTTCCTGTATGACCTCCTGTCAATCATGGACAGAGGCTTCGTGTTCAACCTCATCAAGCATTACTGCAGCCAG tgtcacctcagtcaagcagtgtgttatatcttctttttggggctctgtagGAGAGCAAGCCACCAGAGAAAATCAACATAAGCCTGTCATTCTTCTTGTATGCACTCCTATCAATAATAGACAGGGGCTTAGTGTTCAACC---TCAAACATTACTGTAGCCAAgtaggtctctaggggcagatcatcctgactgcactgctgggactgtgaga Alignment from Pairagon GAAAGCGAGCAGGCAGAAAAGATCAACATCAGCCTTGCCTTCTTCCTGTATGACCTCCTGTCAATCATGGACAGAGGCTTCGTGTTCAACCTCATCAAGCATTACTGCAGCCAG tgtcacctcagtcaagcagtgtgttatatcttctttttggggctctgtagGAGAGCAAGCCACCAGAGAAAATCAACATAAGCCTGTCATTCTTCTTGTATGCACTCCTATCAATAATAGACAGGGGCTTAGTGTTCAACC---TCAAACATTACTGTAGCCAAgtaggtctctaggggcagatcatcctgactgcactgctgggactgtgaga Alignment from Exonerate_protein2genome GAAAGCGAGCAGGCAGAAAAGATCAACATCAGCCTTGCCTTCTTCCTGTATGACCTCCTGTCAATCATGGACAGAGGCTTCGTGTTCAACCTCATCAAGCATTACTGCAGCCAG tgtcacctcagtcaagcagtgtgttatatcttctttttggggctctgtagGAGAGCAAGCCACCAGAGAAAATCAACATAAGCCTGTCATTCTTCTTGTATGCACTCCTATCAATAATAGACAGGGGCTTAGTGTTCAACCTC---AAACATTACTGTAGCCAAgtaggtctctaggggcagatcatcctgactgcactgctgggactgtgaga Alignment from Exonerate_coding2genome GAAAGCGAGCAGGCAGAAAAGATCAACATCAGCCTTGCCTTCTTCCTGTATGACCTCCTGTCAATCATGGACAGAGGCTTCGTGTTCAACCTCATCAAGCATTACTGCAGCCAG tgtcacctcagtcaagcagtgtgttatatcttctttttggggctctgtagGAGAGCAAGCCACCAGAGAAAATCAACATAAGCCTGTCATTCTTCTTGTATGCACTCCTATCAATAATAGACAGGGGCTTAGTGTTCAACCTC---AAACATTACTGTAGCCAAgtaggtctctaggggcagatcatcctgactgcactgctgggactgtgaga Alignment from GeneWise GAAAGCGAGCAGGCAGAAAAGATCAACATCAGCCTTGCCTTCTTCCTGTATGACCTCCTGTCAATCATGGACAGAGGCTTCGTGTTCAACCTCATCAAGCATTACTGCAGCCAG tgtcacctcagtcaagcagtgtgttatatcttctttttggggctctgtagGAGAGCAAGCCACCAGAGAAAATCAACATAAGCCTGTCATTCTTCTTGTATGCACTCCTATCAATAATAGACAGGGGCTTAGTGTTCAACCTC---AAACATTACTGTAGCCAAgtaggtctctaggggcagatcatcctgactgcactgctgggactgtgaga #### Dock8_ID5408_27 --> 0 - 0 Original Alignment CTGTCAGCCAAGCTGAATATCCTTCCAACGCTCATCTCCATGCGGCTGGAATTCCTGAGGATCCTCTGCAGCCATGAGCACTACCTCAACTTGAACCTCCTCTTCATGAATACCGACACCGCACCAGCATCTCCCTGCCCCTCCATATCCTCCCAG caaattgtttgttttattctagacattctgttttccttttacatttgtagCTGTCAACCAAGCTGAATATCCTCCCAATACTTATATCCATGTGGCAGGAATTTTTAAGAATTATCTGCAGCCATGAACACTACCTTAACTTGACCCTCCTCTTTATGAAGACAGATACTGCACCAGCATCTCCCTGTCCCTCAACATCATCCCGGgtaagttacaaacaagatgacagggatgaagcccccgtggcatggaatag Alignment from CESAR CTGTCAGCCAAGCTGAATATCCTTCCAACGCTCATCTCCATGCGGCTGGAATTCCTGAGGATCCTCTGCAGCCATGAGCACTACCTCAACTTGAACCTCCTCTTCATGAATACCGACACCGCACCAGCATCTCCCTGCCCCTCCATATCCTCCCAG caaattgtttgttttattctagacattctgttttccttttacatttgtagCTGTCAACCAAGCTGAATATCCTCCCAATACTTATATCCATGTGGCAGGAATTTTTAAGAATTATCTGCAGCCATGAACACTACCTTAACTTGACCCTCCTCTTTATGAAGACAGATACTGCACCAGCATCTCCCTGTCCCTCAACATCATCCCGGgtaagttacaaacaagatgacagggatgaagcccccgtggcatggaatag Alignment from Spaln_aa2Genome CTGTCAGCCAAGCTGAATATCCTTCCAACGCTCATCTCCATGCGGCTGGAATTCCTGAGGATCCTCTGCAGCCATGAGCACTACCTCAACTTGAACCTCCTCTTCATGAATACCGACACCGCACCAGCATCTCCCTGCCCCTCCATATCCTCCCAG caaattgtttgttttattctagacattctgttttccttttacatttgtagCTGTCAACCAAGCTGAATATCCTCCCAATACTTATATCCATGTGGCAGGAATTTTTAAGAATTATCTGCAGCCATGAACACTACCTTAACTTGACCCTCCTCTTTATGAAGACAGATACTGCACCAGCATCTCCCTGTCCCTCAACATCATCCCGGgtaagttacaaacaagatgacagggatgaagcccccgtggcatggaatag Alignment from Spaln_nt2Genome CTGTCAGCCAAGCTGAATATCCTTCCAACGCTCATCTCCATGCGGCTGGAATTCCTGAGGATCCTCTGCAGCCATGAGCACTACCTCAACTTGAACCTCCTCTTCATGAATACCGACACCGCACCAGCATCTCCCTGCCCCTCCATATCCTCCCAG caaattgtttgttttattctagacattctgttttccttttacatttgtagCTGTCAACCAAGCTGAATATCCTCCCAATACTTATATCCATGTGGCAGGAATTTTTAAGAATTATCTGCAGCCATGAACACTACCTTAACTTGACCCTCCTCTTTATGAAGACAGATACTGCACCAGCATCTCCCTGTCCCTCAACATCATCCCGGgtaagttacaaacaagatgacagggatgaagcccccgtggcatggaatag Alignment from Pairagon CTGTCAGCCAAGCTGAATATCCTTCCAACGCTCATCTCCATGCGGCTGGAATTCCTGAGGATCCTCTGCAGCCATGAGCACTACCTCAACTTGAACCTCCTCTTCATGAATACCGACACCGCACCAGCATCTCCCTGCCCCTCCATATCCTCCCAG caaattgtttgttttattctagacattctgttttccttttacatttgtagCTGTCAACCAAGCTGAATATCCTCCCAATACTTATATCCATGTGGCAGGAATTTTTAAGAATTATCTGCAGCCATGAACACTACCTTAACTTGACCCTCCTCTTTATGAAGACAGATACTGCACCAGCATCTCCCTGTCCCTCAACATCATCCCGGgtaagttacaaacaagatgacagggatgaagcccccgtggcatggaatag Alignment from Exonerate_protein2genome CTGTCAGCCAAGCTGAATATCCTTCCAACGCTCATCTCCATGCGGCTGGAATTCCTGAGGATCCTCTGCAGCCATGAGCACTACCTCAACTTGAACCTCCTCTTCATGAATACCGACACCGCACCAGCATCTCCCTGCCCCTCCATATCCTCCCAG caaattgtttgttttattctagacattctgttttccttttacatttgtagCTGTCAACCAAGCTGAATATCCTCCCAATACTTATATCCATGTGGCAGGAATTTTTAAGAATTATCTGCAGCCATGAACACTACCTTAACTTGACCCTCCTCTTTATGAAGACAGATACTGCACCAGCATCTCCCTGTCCCTCAACATCATCCCGGgtaagttacaaacaagatgacagggatgaagcccccgtggcatggaatag Alignment from Exonerate_coding2genome CTGTCAGCCAAGCTGAATATCCTTCCAACGCTCATCTCCATGCGGCTGGAATTCCTGAGGATCCTCTGCAGCCATGAGCACTACCTCAACTTGAACCTCCTCTTCATGAATACCGACACCGCACCAGCATCTCCCTGCCCCTCCATATCCTCCCAG caaattgtttgttttattctagacattctgttttccttttacatttgtagCTGTCAACCAAGCTGAATATCCTCCCAATACTTATATCCATGTGGCAGGAATTTTTAAGAATTATCTGCAGCCATGAACACTACCTTAACTTGACCCTCCTCTTTATGAAGACAGATACTGCACCAGCATCTCCCTGTCCCTCAACATCATCCCGGgtaagttacaaacaagatgacagggatgaagcccccgtggcatggaatag Alignment from GeneWise CTGTCAGCCAAGCTGAATATCCTTCCAACGCTCATCTCCATGCGGCTGGAATTCCTGAGGATCCTCTGCAGCCATGAGCACTACCTCAACTTGAACCTCCTCTTCATGAATACCGACACCGCACCAGCATCTCCCTGCCCCTCCATATCCTCCCAG caaattgtttgttttattctagacattctgttttccttttacatttgtagCTGTCAACCAAGCTGAATATCCTCCCAATACTTATATCCATGTGGCAGGAATTTTTAAGAATTATCTGCAGCCATGAACACTACCTTAACTTGACCCTCCTCTTTATGAAGACAGATACTGCACCAGCATCTCCCTGTCCCTCAACATCATCCCGGgtaagttacaaacaagatgacagggatgaagcccccgtggcatggaatag #### Dock8_ID5420_38 --> 0 - 2 Original Alignment GTGGAGGAACTTCTCTGCAATCTGAACAGCATTCTGTACGACACAGTGAAGATGAGGGAATTCCAGGAAGACCCTGAGATGCTTATGGACCTCATGTACag gaatggtgttgacatttatcagcacatcatttggtgggttttgaacccagGTGGAAGAACTTCTCTGCAATCTGAACAGCATTCTGTACGACCCAGTCAAGATGAAGGAATTCCAAGAAGACCCTGATATGCTTACGGACCTTATGTACaagtgggcgctgtttagatgaaaaaatttgactaaatgataatggatctaaa Alignment from CESAR GTGGAGGAACTTCTCTGCAATCTGAACAGCATTCTGTACGACACAGTGAAGATGAGGGAATTCCAGGAAGACCCTGAGATGCTTATGGACCTCATGTACag gaatggtgttgacatttatcagcacatcatttggtgggttttgaacccagGTGGAAGAACTTCTCTGCAATCTGAACAGCATTCTGTACGACCCAGTCAAGATGAAGGAATTCCAAGAAGACCCTGATATGCTTACGGACCTTATGTACaagtgggcgctgtttagatgaaaaaatttgactaaatgataatggatctaaa Alignment from Spaln_aa2Genome GTGGAGGAACTTCTCTGCAATCTGAACAGCATTCTGTACGACACAGTGAAGATGAGGGAATTCCAGGAAGACCCTGAGATGCTTATGGACCTCATGTACAG gaatggtgttgacatttatcagcacatcatttggtgggttttgaacccagGTGGAAGAACTTCTCTGCAATCTGAACAGCATTCTGTACGACCCAGTCAAGATGAAGGAATTCCAAGAAGACCCTGATATGCTTACGGACCTTATGTACAAgtgggcgctgtttagatgaaaaaatttgactaaatgataatggatctaaa Alignment from Spaln_nt2Genome GTGGAGGAACTTCTCTGCAATCTGAACAGCATTCTGTACGACACAGTGAAGATGAGGGAATTCCAGGAAGACCCTGAGATGCTTATGGACCTCATGTACAG gaatggtgttgacatttatcagcacatcatttggtgggttttgaacccagGTGGAAGAACTTCTCTGCAATCTGAACAGCATTCTGTACGACCCAGTCAAGATGAAGGAATTCCAAGAAGACCCTGATATGCTTACGGACCTTATGTACAAgtgggcgctgtttagatgaaaaaatttgactaaatgataatggatctaaa Alignment from Pairagon GTGGAGGAACTTCTCTGCAATCTGAACAGCATTCTGTACGACACAGTGAAGATGAGGGAATTCCAGGAAGACCCTGAGATGCTTATGGACCTCATGTACAG gaatggtgttgacatttatcagcacatcatttggtgggttttgaacccagGTGGAAGAACTTCTCTGCAATCTGAACAGCATTCTGTACGACCCAGTCAAGATGAAGGAATTCCAAGAAGACCCTGATATGCTTACGGACCTTATGTACAAgtgggcgctgtttagatgaaaaaatttgactaaatgataatggatctaaa Alignment from Exonerate_protein2genome GTGGAGGAACTTCTCTGCAATCTGAACAGCATTCTGTACGACACAGTGAAGATGAGGGAATTCCAGGAAGACCCTGAGATGCTTATGGACCTCATGTACAG gaatggtgttgacatttatcagcacatcatttggtgggttttgaacccagGTGGAAGAACTTCTCTGCAATCTGAACAGCATTCTGTACGACCCAGTCAAGATGAAGGAATTCCAAGAAGACCCTGATATGCTTACGGACCTTATGTACAAgtgggcgctgtttagatgaaaaaatttgactaaatgataatggatctaaa Alignment from Exonerate_coding2genome GTGGAGGAACTTCTCTGCAATCTGAACAGCATTCTGTACGACACAGTGAAGATGAGGGAATTCCAGGAAGACCCTGAGATGCTTATGGACCTCATGTACAG gaatggtgttgacatttatcagcacatcatttggtgggttttgaacccagGTGGAAGAACTTCTCTGCAATCTGAACAGCATTCTGTACGACCCAGTCAAGATGAAGGAATTCCAAGAAGACCCTGATATGCTTACGGACCTTATGTACAAgtgggcgctgtttagatgaaaaaatttgactaaatgataatggatctaaa Alignment from GeneWise GTGGAGGAACTTCTCTGCAATCTGAACAGCATTCTGTACGACACAGTGAAGATGAGGGAATTCCAGGAAGACCCTGAGATGCTTATGGACCTCATGTACAG gaatggtgttgacatttatcagcacatcatttggtgggttttgaacccagGTGGAAGAACTTCTCTGCAATCTGAACAGCATTCTGTACGACCCAGTCAAGATGAAGGAATTCCAAGAAGACCCTGATATGCTTACGGACCTTATGTACAAgtgggcgctgtttagatgaaaaaatttgactaaatgataatggatctaaa #### Dpcd_ID9497_4 --> 0 - 2 Original Alignment CCCATCTTCATGCGCAAGGACACCAAAACAAGTTTCCAGTGGCGGATTCGAAATCTCCCCTACCCGAAGGATGTGTATAGTGTGTCTGTGGCCCAGAAGGAGCGCTGCGTCATTGTTAGAACGACAAACAAAaa aagacacaagggccagaggagaggttatgtttaacacttcaattttccagCCGATTTTTACACGCAAAGACACCAAAACCAGCTTCCAGTGGCGGATTCGAAATCTCCCCTACCCTAAAGATGTATATAGTATTTCTGTGGCCCAGAGAGAACGCTGTGTTATCACTCGCATGACAAACAAAaagtgaggagtacgtgtccaccaattcagtgttgtgtcaataatggagtgtt Alignment from CESAR CCCATCTTCATGCGCAAGGACACCAAAACAAGTTTCCAGTGGCGGATTCGAAATCTCCCCTACCCGAAGGATGTGTATAGTGTGTCTGTGGCCCAGAAGGAGCGCTGCGTCATTGTTAGAACGACAAACAAAaa aagacacaagggccagaggagaggttatgtttaacacttcaattttccagCCGATTTTTACACGCAAAGACACCAAAACCAGCTTCCAGTGGCGGATTCGAAATCTCCCCTACCCTAAAGATGTATATAGTATTTCTGTGGCCCAGAGAGAACGCTGTGTTATCACTCGCATGACAAACAAAaagtgaggagtacgtgtccaccaattcagtgttgtgtcaataatggagtgtt Alignment from Spaln_aa2Genome CCCATCTTCATGCGCAAGGACACCAAAACAAGTTTCCAGTGGCGGATTCGAAATCTCCCCTACCCGAAGGATGTGTATAGTGTGTCTGTGGCCCAGAAGGAGCGCTGCGTCATTGTTAGAACGACAAACAAAAA aagacacaagggccagaggagaggttatgtttaacacttcaattttccagCCGATTTTTACACGCAAAGACACCAAAACCAGCTTCCAGTGGCGGATTCGAAATCTCCCCTACCCTAAAGATGTATATAGTATTTCTGTGGCCCAGAGAGAACGCTGTGTTATCACTCGCATGACAAACAAAAAgtgaggagtacgtgtccaccaattcagtgttgtgtcaataatggagtgtt Alignment from Spaln_nt2Genome CCCATCTTCATGCGCAAGGACACCAAAACAAGTTTCCAGTGGCGGATTCGAAATCTCCCCTACCCGAAGGATGTGTATAGTGTGTCTGTGGCCCAGAAGGAGCGCTGCGTCATTGTTAGAACGACAAACAAAAA aagacacaagggccagaggagaggttatgtttaacacttcaattttccagCCGATTTTTACACGCAAAGACACCAAAACCAGCTTCCAGTGGCGGATTCGAAATCTCCCCTACCCTAAAGATGTATATAGTATTTCTGTGGCCCAGAGAGAACGCTGTGTTATCACTCGCATGACAAACAAAAAgtgaggagtacgtgtccaccaattcagtgttgtgtcaataatggagtgtt Alignment from Pairagon CCCATCTTCATGCGCAAGGACACCAAAACAAGTTTCCAGTGGCGGATTCGAAATCTCCCCTACCCGAAGGATGTGTATAGTGTGTCTGTGGCCCAGAAGGAGCGCTGCGTCATTGTTAGAACGACAAACAAAAA aagacacaagggccagaggagaggttatgtttaacacttcaattttccagCCGATTTTTACACGCAAAGACACCAAAACCAGCTTCCAGTGGCGGATTCGAAATCTCCCCTACCCTAAAGATGTATATAGTATTTCTGTGGCCCAGAGAGAACGCTGTGTTATCACTCGCATGACAAACAAAAAgtgaggagtacgtgtccaccaattcagtgttgtgtcaataatggagtgtt Alignment from Exonerate_protein2genome CCCATCTTCATGCGCAAGGACACCAAAACAAGTTTCCAGTGGCGGATTCGAAATCTCCCCTACCCGAAGGATGTGTATAGTGTGTCTGTGGCCCAGAAGGAGCGCTGCGTCATTGTTAGAACGACAAACAAAAA aagacacaagggccagaggagaggttatgtttaacacttcaattttccagCCGATTTTTACACGCAAAGACACCAAAACCAGCTTCCAGTGGCGGATTCGAAATCTCCCCTACCCTAAAGATGTATATAGTATTTCTGTGGCCCAGAGAGAACGCTGTGTTATCACTCGCATGACAAACAAAAAgtgaggagtacgtgtccaccaattcagtgttgtgtcaataatggagtgtt Alignment from Exonerate_coding2genome CCCATCTTCATGCGCAAGGACACCAAAACAAGTTTCCAGTGGCGGATTCGAAATCTCCCCTACCCGAAGGATGTGTATAGTGTGTCTGTGGCCCAGAAGGAGCGCTGCGTCATTGTTAGAACGACAAACAAAAA aagacacaagggccagaggagaggttatgtttaacacttcaattttccagCCGATTTTTACACGCAAAGACACCAAAACCAGCTTCCAGTGGCGGATTCGAAATCTCCCCTACCCTAAAGATGTATATAGTATTTCTGTGGCCCAGAGAGAACGCTGTGTTATCACTCGCATGACAAACAAAAAgtgaggagtacgtgtccaccaattcagtgttgtgtcaataatggagtgtt Alignment from GeneWise CCCATCTTCATGCGCAAGGACACCAAAACAAGTTTCCAGTGGCGGATTCGAAATCTCCCCTACCCGAAGGATGTGTATAGTGTGTCTGTGGCCCAGAAGGAGCGCTGCGTCATTGTTAGAACGACAAACAAAAA aagacacaagggccagaggagaggttatgtttaacacttcaattttccagCCGATTTTTACACGCAAAGACACCAAAACCAGCTTCCAGTGGCGGATTCGAAATCTCCCCTACCCTAAAGATGTATATAGTATTTCTGTGGCCCAGAGAGAACGCTGTGTTATCACTCGCATGACAAACAAAAAgtgaggagtacgtgtccaccaattcagtgttgtgtcaataatggagtgtt #### Dpf2_ID1310_4 --> 2 - 0 Original Alignment acACTGACCAGACTCTGAAGAAAGAGGGGCTTATCTCTCAGGATGGCAGCAGTTTAGAGGCTCTGTTGCGTACTGATCCCCTGGAGAAACGGGGTGCCCCAGATCCCCGAGTTGACGATGACAGCCTGGGCGAGTTTCCTGTTAGCAACAGTCGAGCACGGAAG ggcttggtcctgtgtcattagttaattattagcacttttttttttaatagacACTGACCAAACTCTTAAGAAAGAGGGGCTCATCTCTCAGGATGGCAGCAGTTTAGAGGCCCTGTTACGTACTGATCCCCTGGAGAAACGAGGTGCCCCCGATCCTCGTGTTGACGATGACAGCCTAGGCGAGTTTCCTGTTAGTAATAGTCGAGCACGGAAGgtaagctaacaccgcggttaggggtatttctgcatataagcatacctata Alignment from CESAR acACTGACCAGACTCTGAAGAAAGAGGGGCTTATCTCTCAGGATGGCAGCAGTTTAGAGGCTCTGTTGCGTACTGATCCCCTGGAGAAACGGGGTGCCCCAGATCCCCGAGTTGACGATGACAGCCTGGGCGAGTTTCCTGTTAGCAACAGTCGAGCACGGAAG ggcttggtcctgtgtcattagttaattattagcacttttttttttaatagacACTGACCAAACTCTTAAGAAAGAGGGGCTCATCTCTCAGGATGGCAGCAGTTTAGAGGCCCTGTTACGTACTGATCCCCTGGAGAAACGAGGTGCCCCCGATCCTCGTGTTGACGATGACAGCCTAGGCGAGTTTCCTGTTAGTAATAGTCGAGCACGGAAGgtaagctaacaccgcggttaggggtatttctgcatataagcatacctata Alignment from Spaln_aa2Genome ACACTGACCAGACTCTGAAGAAAGAGGGGCTTATCTCTCAGGATGGCAGCAGTTTAGAGGCTCTGTTGCGTACTGATCCCCTGGAGAAACGGGGTGCCCCAGATCCCCGAGTTGACGATGACAGCCTGGGCGAGTTTCCTGTTAGCAACAGTCGAGCACGGAAG ggcttggtcctgtgtcattagttaattattagcacttttttttttaatagACACTGACCAAACTCTTAAGAAAGAGGGGCTCATCTCTCAGGATGGCAGCAGTTTAGAGGCCCTGTTACGTACTGATCCCCTGGAGAAACGAGGTGCCCCCGATCCTCGTGTTGACGATGACAGCCTAGGCGAGTTTCCTGTTAGTAATAGTCGAGCACGGAAGgtaagctaacaccgcggttaggggtatttctgcatataagcatacctata Alignment from Spaln_nt2Genome ACACTGACCAGACTCTGAAGAAAGAGGGGCTTATCTCTCAGGATGGCAGCAGTTTAGAGGCTCTGTTGCGTACTGATCCCCTGGAGAAACGGGGTGCCCCAGATCCCCGAGTTGACGATGACAGCCTGGGCGAGTTTCCTGTTAGCAACAGTCGAGCACGGAAG ggcttggtcctgtgtcattagttaattattagcacttttttttttaatagACACTGACCAAACTCTTAAGAAAGAGGGGCTCATCTCTCAGGATGGCAGCAGTTTAGAGGCCCTGTTACGTACTGATCCCCTGGAGAAACGAGGTGCCCCCGATCCTCGTGTTGACGATGACAGCCTAGGCGAGTTTCCTGTTAGTAATAGTCGAGCACGGAAGgtaagctaacaccgcggttaggggtatttctgcatataagcatacctata Alignment from Pairagon ACACTGACCAGACTCTGAAGAAAGAGGGGCTTATCTCTCAGGATGGCAGCAGTTTAGAGGCTCTGTTGCGTACTGATCCCCTGGAGAAACGGGGTGCCCCAGATCCCCGAGTTGACGATGACAGCCTGGGCGAGTTTCCTGTTAGCAACAGTCGAGCACGGAAG ggcttggtcctgtgtcattagttaattattagcacttttttttttaatagACACTGACCAAACTCTTAAGAAAGAGGGGCTCATCTCTCAGGATGGCAGCAGTTTAGAGGCCCTGTTACGTACTGATCCCCTGGAGAAACGAGGTGCCCCCGATCCTCGTGTTGACGATGACAGCCTAGGCGAGTTTCCTGTTAGTAATAGTCGAGCACGGAAGgtaagctaacaccgcggttaggggtatttctgcatataagcatacctata Alignment from Exonerate_protein2genome ACACTGACCAGACTCTGAAGAAAGAGGGGCTTATCTCTCAGGATGGCAGCAGTTTAGAGGCTCTGTTGCGTACTGATCCCCTGGAGAAACGGGGTGCCCCAGATCCCCGAGTTGACGATGACAGCCTGGGCGAGTTTCCTGTTAGCAACAGTCGAGCACGGAAG ggcttggtcctgtgtcattagttaattattagcacttttttttttaatagACACTGACCAAACTCTTAAGAAAGAGGGGCTCATCTCTCAGGATGGCAGCAGTTTAGAGGCCCTGTTACGTACTGATCCCCTGGAGAAACGAGGTGCCCCCGATCCTCGTGTTGACGATGACAGCCTAGGCGAGTTTCCTGTTAGTAATAGTCGAGCACGGAAGgtaagctaacaccgcggttaggggtatttctgcatataagcatacctata Alignment from Exonerate_coding2genome ACACTGACCAGACTCTGAAGAAAGAGGGGCTTATCTCTCAGGATGGCAGCAGTTTAGAGGCTCTGTTGCGTACTGATCCCCTGGAGAAACGGGGTGCCCCAGATCCCCGAGTTGACGATGACAGCCTGGGCGAGTTTCCTGTTAGCAACAGTCGAGCACGGAAG ggcttggtcctgtgtcattagttaattattagcacttttttttttaatagACACTGACCAAACTCTTAAGAAAGAGGGGCTCATCTCTCAGGATGGCAGCAGTTTAGAGGCCCTGTTACGTACTGATCCCCTGGAGAAACGAGGTGCCCCCGATCCTCGTGTTGACGATGACAGCCTAGGCGAGTTTCCTGTTAGTAATAGTCGAGCACGGAAGgtaagctaacaccgcggttaggggtatttctgcatataagcatacctata Alignment from GeneWise ACACTGACCAGACTCTGAAGAAAGAGGGGCTTATCTCTCAGGATGGCAGCAGTTTAGAGGCTCTGTTGCGTACTGATCCCCTGGAGAAACGGGGTGCCCCAGATCCCCGAGTTGACGATGACAGCCTGGGCGAGTTTCCTGTTAGCAACAGTCGAGCACGGAAG ggcttggtcctgtgtcattagttaattattagcacttttttttttaatagACACTGACCAAACTCTTAAGAAAGAGGGGCTCATCTCTCAGGATGGCAGCAGTTTAGAGGCCCTGTTACGTACTGATCCCCTGGAGAAACGAGGTGCCCCCGATCCTCGTGTTGACGATGACAGCCTAGGCGAGTTTCCTGTTAGTAATAGTCGAGCACGGAAGgtaagctaacaccgcggttaggggtatttctgcatataagcatacctata #### Dpf2_ID1311_3 --> 2 - 1 Original Alignment gaTTGGCCTCTGGACAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAGGATCCCAGGCTTTCTTTCCCATCGATTAAACCAg tcttttaggctttgtgtcagtgttcaatctcccattggttcctgtaacaggcCTAACTTCAGGCCAGTTATACTCATATCCCACTAGACGTTGGCGGAAAAAGCACCGAGCCCACCCACCTGAAGATCCCTGGTTTTCTTTTCCATCCATCAAGCCAggtagggactagactagaagggcagagattgttaagttaatttacttagca Alignment from CESAR gaTTGGCCTCTGGACAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAGGATCCCAGGCTTTCTTTCCCATCGATTAAACCAg tcttttaggctttgtgtcagtgttcaatctcccattggttcctgtaacaggcCTAACTTCAGGCCAGTTATACTCATATCCCACTAGACGTTGGCGGAAAAAGCACCGAGCCCACCCACCTGAAGATCCCTGGTTTTCTTTTCCATCCATCAAGCCAggtagggactagactagaagggcagagattgttaagttaatttacttagca Alignment from Spaln_aa2Genome GATTGGCCTCTGGACAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAGGATCCCAGGCTTTCTTTCCCATCGATTAAACCAG tcttttaggctttgtgtcagtgttcaatctcccattggttcctgtaacagGCCTAACTTCAGGCCAGTTATACTCATATCCCACTAGACGTTGGCGGAAAAAGCACCGAGCCCACCCACCTGAAGATCCCTGGTTTTCTTTTCCATCCATCAAGCCAGgtagggactagactagaagggcagagattgttaagttaatttacttagca Alignment from Spaln_nt2Genome GATTGGCCTCTGGACAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAGGATCCCAGGCTTTCTTTCCCATCGATTAAACCAG tcttttaggctttgtgtcagtgttcaatctcccattggttcctgtaacagGCCTAACTTCAGGCCAGTTATACTCATATCCCACTAGACGTTGGCGGAAAAAGCACCGAGCCCACCCACCTGAAGATCCCTGGTTTTCTTTTCCATCCATCAAGCCAGgtagggactagactagaagggcagagattgttaagttaatttacttagca Alignment from Pairagon GACAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAGGATCCCAGGCTTTCTTTCCCATCGATTAAACCAG tcttttaggctttgtgtcagtgttcaatctcccattggttcctgtaacaggcctaacttcagGCCAGTTATACTCATATCCCACTAGACGTTGGCGGAAAAAGCACCGAGCCCACCCACCTGAAGATCCCTGGTTTTCTTTTCCATCCATCAAGCCAGgtagggactagactagaagggcagagattgttaagttaatttacttagca Alignment from Exonerate_protein2genome GATTGGCCTCTGGACAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAGGATCCCAGGCTTTCTTTCCCATCGATTAAACCAG tcttttaggctttgtgtcagtgttcaatctcccattggttcctgtaacagGCCTAACTTCAGGCCAGTTATACTCATATCCCACTAGACGTTGGCGGAAAAAGCACCGAGCCCACCCACCTGAAGATCCCTGGTTTTCTTTTCCATCCATCAAGCCAGgtagggactagactagaagggcagagattgttaagttaatttacttagca Alignment from Exonerate_coding2genome GATTGGCCTCTGGACAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAGGATCCCAGGCTTTCTTTCCCATCGATTAAACCAG tcttttaggctttgtgtcagtgttcaatctcccattggttcctgtaacagGCCTAACTTCAGGCCAGTTATACTCATATCCCACTAGACGTTGGCGGAAAAAGCACCGAGCCCACCCACCTGAAGATCCCTGGTTTTCTTTTCCATCCATCAAGCCAGgtagggactagactagaagggcagagattgttaagttaatttacttagca Alignment from GeneWise GATTGGCCTCTGGACAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAGGATCCCAGGCTTTCTTTCCCATCGATTAAACCAG tcttttaggctttgtgtcagtgttcaatctcccattggttcctgtaacagGCCTAACTTCAGGCCAGTTATACTCATATCCCACTAGACGTTGGCGGAAAAAGCACCGAGCCCACCCACCTGAAGATCCCTGGTTTTCTTTTCCATCCATCAAGCCAGgtagggactagactagaagggcagagattgttaagttaatttacttagca #### Dpp3_ID739_14 --> 1 - 0 Original Alignment gATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTC---TACACCCCAGAGGCAGCCAACTGGCGACAG tttggaaactctccaaattcacgggattggcactgctctttctttcccaggGTATTTGGCTATGAGGGAACAGATTCAGAT---GTCATCTATGTGAACTGGCTGAATAAGGTCCAGTCAGGCTTATCTGCTTTGGATTTTCAGCACACACCAAAGGCAGCCAACTGGCAGCAGgtgaggaacagtacagccacatccctcaaggacagatgagcttagacagt Alignment from CESAR gATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTC---TACACCCCAGAGGCAGCCAACTGGCGACAG taaggaaactctccaaattcacgggattggcactgctctttctttcccaggGTATTTGGCTATGAGGGAACAGATTCA---GATGTCATCTATGTGAACTGGCTGAATAAGGTCCAGTCAGGCTTATCTGCTTTGGATTTTCAGCACACACCAAAGGCAGCCAACTGGCAGCAGgtgaggaacagtacagccacatccctcaaggacagatgagcttagacagt Alignment from Spaln_aa2Genome GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTC---TACACCCCAGAGGCAGCCAACTGGCGACAG tttggaaactctccaaattcacgggattggcactgctctttctttcccagGGTATTTGGCTATGAGGGAACAGATTCA---GATGTCATCTATGTGAACTGGCTGAATAAGGTCCAGTCAGGCTTATCTGCTTTGGATTTTCAGCACACACCAAAGGCAGCCAACTGGCAGCAGgtgaggaacagtacagccacatccctcaaggacagatgagcttagacagt Alignment from Spaln_nt2Genome GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTA---CACCCCAGAGGCAGCCAACTGGCGACAG tttggaaactctccaaattcacgggattggcactgctctttctttcccagGGTATTTGGCTATGAGGGAACAGATTC---AGATGTCATCTATGTGAACTGGCTGAATAAGGTCCAGTCAGGCTTATCTGCTTTGGATTTTCAGCACACACCAAAGGCAGCCAACTGGCAGCAGgtgaggaacagtacagccacatccctcaaggacagatgagcttagacagt Alignment from Pairagon GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTC---TACACCCCAGAGGCAGCCAACTGGCGACAG tttggaaactctccaaattcacgggattggcactgctctttctttcccagGGTATTTGGCTATGAGGGAACAGATTC---AGATGTCATCTATGTGAACTGGCTGAATAAGGTCCAGTCAGGCTTATCTGCTTTGGATTTTCAGCACACACCAAAGGCAGCCAACTGGCAGCAGgtgaggaacagtacagccacatccctcaaggacagatgagcttagacagt Alignment from Exonerate_protein2genome GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTC---TACACCCCAGAGGCAGCCAACTGGCGACAG tttggaaactctccaaattcacgggattggcactgctctttctttcccagGGTATTTGGCTATGAGGGAACAGATTCA---GATGTCATCTATGTGAACTGGCTGAATAAGGTCCAGTCAGGCTTATCTGCTTTGGATTTTCAGCACACACCAAAGGCAGCCAACTGGCAGCAGgtgaggaacagtacagccacatccctcaaggacagatgagcttagacagt Alignment from Exonerate_coding2genome GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTC---TACACCCCAGAGGCAGCCAACTGGCGACAG tttggaaactctccaaattcacgggattggcactgctctttctttcccagGGTATTTGGCTATGAGGGAACAGATTCA---GATGTCATCTATGTGAACTGGCTGAATAAGGTCCAGTCAGGCTTATCTGCTTTGGATTTTCAGCACACACCAAAGGCAGCCAACTGGCAGCAGgtgaggaacagtacagccacatccctcaaggacagatgagcttagacagt Alignment from GeneWise ---------------------------------------------------ATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTC---TACACCCCAGAGGCAGCCAACTGGCGACAG TTTGGAAACTCTCCAAATTCACGGGATTGGCACTGCTCTTTCTTTCCCAGGGTATTTGGCTATGAGGGAACAGATTCA---GATGTCATCTATGTGAACTGGCTGAATAAGGTCCAGTCAGGCTTATCTGCTTTGGATTTTCAGCACACACCAAAGGCAGCCAACTGGCAGCAGgtgaggaacagtacagccacatccctcaaggacagatgagcttagacagt #### Dpp3_ID741_12 --> 0 - 0 Original Alignment GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG gagagccatcctaatagatcaagagtgactttatcttactttgctttaagGATGAGAAAGGAGCTTTCAATTTTGACAAGGAAACGGTAATCAACCCCGAGACCAGCGAGCAGgtgagtaaaacatttgttatgaggaaattgcaatagggtagatggccaat Alignment from CESAR GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG gagagccatcctaatagatcaagagtgactttatcttactttgctttaagGATGAGAAAGGAGCTTTCAATTTTGACAAGGAAACGGTAATCAACCCCGAGACCAGCGAGCAGgtgagtaaaacatttgttatgaggaaattgcaatagggtagatggccaat Alignment from Spaln_aa2Genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG gagagccatcctaatagatcaagagtgactttatcttactttgctttaagGATGAGAAAGGAGCTTTCAATTTTGACAAGGAAACGGTAATCAACCCCGAGACCAGCGAGCAGgtgagtaaaacatttgttatgaggaaattgcaatagggtagatggccaat Alignment from Spaln_nt2Genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG gagagccatcctaatagatcaagagtgactttatcttactttgctttaagGATGAGAAAGGAGCTTTCAATTTTGACAAGGAAACGGTAATCAACCCCGAGACCAGCGAGCAGgtgagtaaaacatttgttatgaggaaattgcaatagggtagatggccaat Alignment from Pairagon GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGAC------------------------------------------------------------ gagagccatcctaatagatcaagagtgactttatcttactttgctttaagGATGAGAAAGGAGCTTTCAATTTTGACAAGGAAACGGTAATCAACCCCGAGACCAGCGAGCAGGTGAGTAAAACATTTGTTATGAGGAAATTGCAATAGGGTAGATGGCCAAT Alignment from Exonerate_protein2genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG gagagccatcctaatagatcaagagtgactttatcttactttgctttaagGATGAGAAAGGAGCTTTCAATTTTGACAAGGAAACGGTAATCAACCCCGAGACCAGCGAGCAGgtgagtaaaacatttgttatgaggaaattgcaatagggtagatggccaat Alignment from Exonerate_coding2genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG gagagccatcctaatagatcaagagtgactttatcttactttgctttaagGATGAGAAAGGAGCTTTCAATTTTGACAAGGAAACGGTAATCAACCCCGAGACCAGCGAGCAGgtgagtaaaacatttgttatgaggaaattgcaatagggtagatggccaat Alignment from GeneWise GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG gagagccatcctaatagatcaagagtgactttatcttactttgctttaagGATGAGAAAGGAGCTTTCAATTTTGACAAGGAAACGGTAATCAACCCCGAGACCAGCGAGCAGgtgagtaaaacatttgttatgaggaaattgcaatagggtagatggccaat #### Dpp3_ID743_10 --> 2 - 0 Original Alignment acGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaatatagtccactcctgtctgtctgtccttttcccccagacGATGACCTGAGACAAACAGAAGGCTTTAAGAACGTATCACTGGGGAATGTGCTGGCTGTGGCCTATGCTGCAAAGCGAGAGAAGCTAACATTCTTGGAGGAGGAAGACAAGgtgagcatggccccccaagcttatggtgttgctgttctggtactgggcaa Alignment from CESAR acGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaatatagtccactcctgtctgtctgtccttttcccccagacGATGACCTGAGACAAACAGAAGGCTTTAAGAACGTATCACTGGGGAATGTGCTGGCTGTGGCCTATGCTGCAAAGCGAGAGAAGCTAACATTCTTGGAGGAGGAAGACAAGgtgagcatggccccccaagcttatggtgttgctgttctggtactgggcaa Alignment from Spaln_aa2Genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaatatagtccactcctgtctgtctgtccttttcccccagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACGTATCACTGGGGAATGTGCTGGCTGTGGCCTATGCTGCAAAGCGAGAGAAGCTAACATTCTTGGAGGAGGAAGACAAGgtgagcatggccccccaagcttatggtgttgctgttctggtactgggcaa Alignment from Spaln_nt2Genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaatatagtccactcctgtctgtctgtccttttcccccagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACGTATCACTGGGGAATGTGCTGGCTGTGGCCTATGCTGCAAAGCGAGAGAAGCTAACATTCTTGGAGGAGGAAGACAAGgtgagcatggccccccaagcttatggtgttgctgttctggtactgggcaa Alignment from Pairagon ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaatatagtccactcctgtctgtctgtccttttcccccagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACGTATCACTGGGGAATGTGCTGGCTGTGGCCTATGCTGCAAAGCGAGAGAAGCTAACATTCTTGGAGGAGGAAGACAAGgtgagcatggccccccaagcttatggtgttgctgttctggtactgggcaa Alignment from Exonerate_protein2genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaatatagtccactcctgtctgtctgtccttttcccccagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACGTATCACTGGGGAATGTGCTGGCTGTGGCCTATGCTGCAAAGCGAGAGAAGCTAACATTCTTGGAGGAGGAAGACAAGgtgagcatggccccccaagcttatggtgttgctgttctggtactgggcaa Alignment from Exonerate_coding2genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaatatagtccactcctgtctgtctgtccttttcccccagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACGTATCACTGGGGAATGTGCTGGCTGTGGCCTATGCTGCAAAGCGAGAGAAGCTAACATTCTTGGAGGAGGAAGACAAGgtgagcatggccccccaagcttatggtgttgctgttctggtactgggcaa Alignment from GeneWise ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaatatagtccactcctgtctgtctgtccttttcccccagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACGTATCACTGGGGAATGTGCTGGCTGTGGCCTATGCTGCAAAGCGAGAGAAGCTAACATTCTTGGAGGAGGAAGACAAGgtgagcatggccccccaagcttatggtgttgctgttctggtactgggcaa #### Dpp3_ID744_9 --> 2 - 1 Original Alignment gcTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCGGGCATCAACATCCCCAACt tgttggcgacatccatctatagaccaggtgcactctgtcttgcaccttaggaTTTGTAGCTATGGTAAATAAAGTCATGAGTGCCAAGTTTGAGTGGCTTGTCACCAGTACTGAACAGGTGCTGAGGGAGTTGCCACGACCTCTTGCCTTTGAGAAAGATAAGTTCCTCACCCCTGACTTCACTTCAATAGATGTGCTGACGTTTGCTGGGTCAGGTATACCTGCAGGCATAAACATCCCTAATtgtacatcttttccttcagtacaaatatagtccactcctgggttctttgct Alignment from CESAR gcTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCGGGCATCAACATCCCCAACt tgttggcgacatccatctatagaccaggtgcactctgtcttgcaccttaggaTTTGTAGCTATGGTAAATAAAGTCATGAGTGCCAAGTTTGAGTGGCTTGTCACCAGTACTGAACAGGTGCTGAGGGAGTTGCCACGACCTCTTGCCTTTGAGAAAGATAAGTTCCTCACCCCTGACTTCACTTCAATAGATGTGCTGACGTTTGCTGGGTCAGGTATACCTGCAGGCATAAACATCCCTAATtgtacatcttttccttcagtacaaatatagtccactcctgtctgtctgtcc Alignment from Spaln_aa2Genome GCTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCGGGCATCAACATCCCCAACT tgttggcgacatccatctatagaccaggtgcactctgtcttgcaccttagGATTTGTAGCTATGGTAAATAAAGTCATGAGTGCCAAGTTTGAGTGGCTTGTCACCAGTACTGAACAGGTGCTGAGGGAGTTGCCACGACCTCTTGCCTTTGAGAAAGATAAGTTCCTCACCCCTGACTTCACTTCAATAGATGTGCTGACGTTTGCTGGGTCAGGTATACCTGCAGGCATAAACATCCCTAATTgtacatcttttccttcagtacaaatatagtccactcctgggttctttgct Alignment from Spaln_nt2Genome GCTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCGGGCATCAACATCCCCAACT tgttggcgacatccatctatagaccaggtgcactctgtcttgcaccttagGATTTGTAGCTATGGTAAATAAAGTCATGAGTGCCAAGTTTGAGTGGCTTGTCACCAGTACTGAACAGGTGCTGAGGGAGTTGCCACGACCTCTTGCCTTTGAGAAAGATAAGTTCCTCACCCCTGACTTCACTTCAATAGATGTGCTGACGTTTGCTGGGTCAGGTATACCTGCAGGCATAAACATCCCTAATTgtacatcttttccttcagtacaaatatagtccactcctgggttctttgct Alignment from Pairagon GCTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCGGGCATCAACATCCCCAACT tgttggcgacatccatctatagaccaggtgcactctgtcttgcaccttagGATTTGTAGCTATGGTAAATAAAGTCATGAGTGCCAAGTTTGAGTGGCTTGTCACCAGTACTGAACAGGTGCTGAGGGAGTTGCCACGACCTCTTGCCTTTGAGAAAGATAAGTTCCTCACCCCTGACTTCACTTCAATAGATGTGCTGACGTTTGCTGGGTCAGGTATACCTGCAGGCATAAACATCCCTAATTgtacatcttttccttcagtacaaatatagtccactcctgggttctttgct Alignment from Exonerate_protein2genome GCTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCGGGCATCAACATCCCCAACT tgttggcgacatccatctatagaccaggtgcactctgtcttgcaccttagGATTTGTAGCTATGGTAAATAAAGTCATGAGTGCCAAGTTTGAGTGGCTTGTCACCAGTACTGAACAGGTGCTGAGGGAGTTGCCACGACCTCTTGCCTTTGAGAAAGATAAGTTCCTCACCCCTGACTTCACTTCAATAGATGTGCTGACGTTTGCTGGGTCAGGTATACCTGCAGGCATAAACATCCCTAATTgtacatcttttccttcagtacaaatatagtccactcctgggttctttgct Alignment from Exonerate_coding2genome GCTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCGGGCATCAACATCCCCAACT tgttggcgacatccatctatagaccaggtgcactctgtcttgcaccttagGATTTGTAGCTATGGTAAATAAAGTCATGAGTGCCAAGTTTGAGTGGCTTGTCACCAGTACTGAACAGGTGCTGAGGGAGTTGCCACGACCTCTTGCCTTTGAGAAAGATAAGTTCCTCACCCCTGACTTCACTTCAATAGATGTGCTGACGTTTGCTGGGTCAGGTATACCTGCAGGCATAAACATCCCTAATTgtacatcttttccttcagtacaaatatagtccactcctgggttctttgct Alignment from GeneWise GCTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCGGGCATCAACATCCCCAACT tgttggcgacatccatctatagaccaggtgcactctgtcttgcaccttagGATTTGTAGCTATGGTAAATAAAGTCATGAGTGCCAAGTTTGAGTGGCTTGTCACCAGTACTGAACAGGTGCTGAGGGAGTTGCCACGACCTCTTGCCTTTGAGAAAGATAAGTTCCTCACCCCTGACTTCACTTCAATAGATGTGCTGACGTTTGCTGGGTCAGGTATACCTGCAGGCATAAACATCCCTAATTgtacatcttttccttcagtacaaatatagtccactcctgggttctttgct #### Dpp3_ID745_8 --> 1 - 1 Original Alignment tTACATTGGCTTCATTGAGAGCTACCGTGACCCCTTTGGCTCCCGAGGAGAGTTTGAAg ggtctgattgtgtcaatgcactatttgcttgtccccaccccatcatacagtTACATTGGCTTCATTAAAAGCTACCGTGATCCCTTTGGCTCTCAAGAAGAGTTCAAAggtgagtactttgggaatggaggcttatatatctgtttttgctaaaagtgg Alignment from CESAR tTACATTGGCTTCATTGAGAGCTACCGTGACCCCTTTGGCTCCCGAGGAGAGTTTGAAg ggtctgattgtgtcaatgcactatttgcttgtccccaccccatcatacagtTACATTGGCTTCATTAAAAGCTACCGTGATCCCTTTGGCTCTCAAGAAGAGTTCAAAggtgagtactttgggaatggaggcttatatatctgtttttgctaaaagtgg Alignment from Spaln_aa2Genome TTACATTGGCTTCATTGAGAGCTACCGTGACCCCTTTGGCTCCCGAGGAGAGTTTGAAG ggtctgattgtgtcaatgcactatttgcttgtccccaccccatcatacagTTACATTGGCTTCATTAAAAGCTACCGTGATCCCTTTGGCTCTCAAGAAGAGTTCAAAGgtgagtactttgggaatggaggcttatatatctgtttttgctaaaagtgg Alignment from Spaln_nt2Genome TTACATTGGCTTCATTGAGAGCTACCGTGACCCCTTTGGCTCCCGAGGAGAGTTTGAAG ggtctgattgtgtcaatgcactatttgcttgtccccaccccatcatacagTTACATTGGCTTCATTAAAAGCTACCGTGATCCCTTTGGCTCTCAAGAAGAGTTCAAAGgtgagtactttgggaatggaggcttatatatctgtttttgctaaaagtgg Alignment from Pairagon TTACATTGGCTTCATTGAGAGCTACCGTGACCCCTTTGGCTCCCGAGGAGAGTTTGAAG ggtctgattgtgtcaatgcactatttgcttgtccccaccccatcatacagTTACATTGGCTTCATTAAAAGCTACCGTGATCCCTTTGGCTCTCAAGAAGAGTTCAAAGgtgagtactttgggaatggaggcttatatatctgtttttgctaaaagtgg Alignment from Exonerate_protein2genome TTACATTGGCTTCATTGAGAGCTACCGTGACCCCTTTGGCTCCCGAGGAGAGTTTGAAG ggtctgattgtgtcaatgcactatttgcttgtccccaccccatcatacagTTACATTGGCTTCATTAAAAGCTACCGTGATCCCTTTGGCTCTCAAGAAGAGTTCAAAGgtgagtactttgggaatggaggcttatatatctgtttttgctaaaagtgg Alignment from Exonerate_coding2genome TTACATTGGCTTCATTGAGAGCTACCGTGACCCCTTTGGCTCCCGAGGAGAGTTTGAAG ggtctgattgtgtcaatgcactatttgcttgtccccaccccatcatacagTTACATTGGCTTCATTAAAAGCTACCGTGATCCCTTTGGCTCTCAAGAAGAGTTCAAAGgtgagtactttgggaatggaggcttatatatctgtttttgctaaaagtgg Alignment from GeneWise TTACATTGGCTTCATTGAGAGCTACCGTGACCCCTTTGGCTCCCGAGGAGAGTTTGAAG ggtctgattgtgtcaatgcactatttgcttgtccccaccccatcatacagTTACATTGGCTTCATTAAAAGCTACCGTGATCCCTTTGGCTCTCAAGAAGAGTTCAAAGgtgagtactttgggaatggaggcttatatatctgtttttgctaaaagtgg #### Dpp3_ID747_6 --> 2 - 0 Original Alignment acCCTGCTCTCGACTCTGAATTGACCTCCAAGCTGAAGAGATATGAGTTCCAGGGGAACCATTTCCAGGTCACCCGGGGGGACTATGCCCCCATCCTCCAGAAGGTGGTAGAACACTTGGAGAAAGCTAAG tagtcacagctaataaggtgccctcctcttactcatgccttctctttcagatCCAGCTCTTGACTCTGAACTGACCTCAAGACTGAAGAGGTATGAGTTCCAGGGGAATCATTCCCAAGTCACTGAGGGGGACTATGCCCCAATACTCCAGAAAGTGGTAGAGCATCTAGAAAAAGCTAAAgtgggatggattaaggaatgtgtggattgatcaaaatgaagatgtgatgg Alignment from CESAR acCCTGCTCTCGACTCTGAATTGACCTCCAAGCTGAAGAGATATGAGTTCCAGGGGAACCATTTCCAGGTCACCCGGGGGGACTATGCCCCCATCCTCCAGAAGGTGGTAGAACACTTGGAGAAAGCTAAG tagtcacagctaataaggtgccctcctcttactcatgccttctctttcagatCCAGCTCTTGACTCTGAACTGACCTCAAGACTGAAGAGGTATGAGTTCCAGGGGAATCATTCCCAAGTCACTGAGGGGGACTATGCCCCAATACTCCAGAAAGTGGTAGAGCATCTAGAAAAAGCTAAAgtgggatggattaaggaatgtgtggattgatcaaaatgaagatttatttt Alignment from Spaln_aa2Genome ACCCTGCTCTCGACTCTGAATTGACCTCCAAGCTGAAGAGATATGAGTTCCAGGGGAACCATTTCCAGGTCACCCGGGGGGACTATGCCCCCATCCTCCAGAAGGTGGTAGAACACTTGGAGAAAGCTAAG tagtcacagctaataaggtgccctcctcttactcatgccttctctttcagATCCAGCTCTTGACTCTGAACTGACCTCAAGACTGAAGAGGTATGAGTTCCAGGGGAATCATTCCCAAGTCACTGAGGGGGACTATGCCCCAATACTCCAGAAAGTGGTAGAGCATCTAGAAAAAGCTAAAgtgggatggattaaggaatgtgtggattgatcaaaatgaagatgtgatgg Alignment from Spaln_nt2Genome ACCCTGCTCTCGACTCTGAATTGACCTCCAAGCTGAAGAGATATGAGTTCCAGGGGAACCATTTCCAGGTCACCCGGGGGGACTATGCCCCCATCCTCCAGAAGGTGGTAGAACACTTGGAGAAAGCTAAG tagtcacagctaataaggtgccctcctcttactcatgccttctctttcagATCCAGCTCTTGACTCTGAACTGACCTCAAGACTGAAGAGGTATGAGTTCCAGGGGAATCATTCCCAAGTCACTGAGGGGGACTATGCCCCAATACTCCAGAAAGTGGTAGAGCATCTAGAAAAAGCTAAAgtgggatggattaaggaatgtgtggattgatcaaaatgaagatgtgatgg Alignment from Pairagon ACCCTGCTCTCGACTCTGAATTGACCTCCAAGCTGAAGAGATATGAGTTCCAGGGGAACCATTTCCAGGTCACCCGGGGGGACTATGCCCCCATCCTCCAGAAGGTGGTAGAACACTTGGAGAAAGCTAAG tagtcacagctaataaggtgccctcctcttactcatgccttctctttcagATCCAGCTCTTGACTCTGAACTGACCTCAAGACTGAAGAGGTATGAGTTCCAGGGGAATCATTCCCAAGTCACTGAGGGGGACTATGCCCCAATACTCCAGAAAGTGGTAGAGCATCTAGAAAAAGCTAAAgtgggatggattaaggaatgtgtggattgatcaaaatgaagatgtgatgg Alignment from Exonerate_protein2genome ACCCTGCTCTCGACTCTGAATTGACCTCCAAGCTGAAGAGATATGAGTTCCAGGGGAACCATTTCCAGGTCACCCGGGGGGACTATGCCCCCATCCTCCAGAAGGTGGTAGAACACTTGGAGAAAGCTAAG tagtcacagctaataaggtgccctcctcttactcatgccttctctttcagATCCAGCTCTTGACTCTGAACTGACCTCAAGACTGAAGAGGTATGAGTTCCAGGGGAATCATTCCCAAGTCACTGAGGGGGACTATGCCCCAATACTCCAGAAAGTGGTAGAGCATCTAGAAAAAGCTAAAgtgggatggattaaggaatgtgtggattgatcaaaatgaagatgtgatgg Alignment from Exonerate_coding2genome ACAGACCCTGCTCTCGACTCTGAATTGACCTCCAAGCTGAAGAGATATGAGTTCCAGGGGAACCATTTCCAGGTCACCCGGGGGGACTATGCCCCCATCCTCCAGAAGGTGGTAGAACACTTGGAGAAAGCTAAG tagtcacagctaataaggtgccctcctcttactcatgccttctcttTCAGATCCAGCTCTTGACTCTGAACTGACCTCAAGACTGAAGAGGTATGAGTTCCAGGGGAATCATTCCCAAGTCACTGAGGGGGACTATGCCCCAATACTCCAGAAAGTGGTAGAGCATCTAGAAAAAGCTAAAgtgggatggattaaggaatgtgtggattgatcaaaatgaagatgtgatgg Alignment from GeneWise ACCCTGCTCTCGACTCTGAATTGACCTCCAAGCTGAAGAGATATGAGTTCCAGGGGAACCATTTCCAGGTCACCCGGGGGGACTATGCCCCCATCCTCCAGAAGGTGGTAGAACACTTGGAGAAAGCTAAG tagtcacagctaataaggtgccctcctcttactcatgccttctctttcagATCCAGCTCTTGACTCTGAACTGACCTCAAGACTGAAGAGGTATGAGTTCCAGGGGAATCATTCCCAAGTCACTGAGGGGGACTATGCCCCAATACTCCAGAAAGTGGTAGAGCATCTAGAAAAAGCTAAAgtgggatggattaaggaatgtgtggattgatcaaaatgaagatgtgatgg #### Dpp3_ID749_4 --> 0 - 0 Original Alignment GGAGTCACCACCTATTTCTCTGGGGATTGTACCATGGAAGATGCTAAGCTGGCCCAGGACTTTCTGGACTCTCAG ttgtcagtattaacacccaattctctccacactttctgtttcaaccttagGGAGTCATCACCTATCTTTCTGGAGATTGTACCAAAGAAGATGCCAAGCTGGCTCAGGATTTCCTGGACTCTCGTgtgagcgttcatgaattgggatgctggcttaatatcttccaattgggtgt Alignment from CESAR GGAGTCACCACCTATTTCTCTGGGGATTGTACCATGGAAGATGCTAAGCTGGCCCAGGACTTTCTGGACTCTCAG ttgtcagtattaacacccaattctctccacactttctgtttcaaccttagGGAGTCATCACCTATCTTTCTGGAGATTGTACCAAAGAAGATGCCAAGCTGGCTCAGGATTTCCTGGACTCTCGTgtgagcgttcatgaattgggatgctggcttaatatcttccaattgggtgt Alignment from Spaln_aa2Genome GGAGTCACCACCTATTTCTCTGGGGATTGTACCATGGAAGATGCTAAGCTGGCCCAGGACTTTCTGGACTCTCAG ttgtcagtattaacacccaattctctccacactttctgtttcaaccttagGGAGTCATCACCTATCTTTCTGGAGATTGTACCAAAGAAGATGCCAAGCTGGCTCAGGATTTCCTGGACTCTCGTgtgagcgttcatgaattgggatgctggcttaatatcttccaattgggtgt Alignment from Spaln_nt2Genome GGAGTCACCACCTATTTCTCTGGGGATTGTACCATGGAAGATGCTAAGCTGGCCCAGGACTTTCTGGACTCTCAG ttgtcagtattaacacccaattctctccacactttctgtttcaaccttagGGAGTCATCACCTATCTTTCTGGAGATTGTACCAAAGAAGATGCCAAGCTGGCTCAGGATTTCCTGGACTCTCGTgtgagcgttcatgaattgggatgctggcttaatatcttccaattgggtgt Alignment from Pairagon GGAGTCACCACCTATTTCTCTGGGGATTGTACCATGGAAGATGCTAAGCTGGCCCAGGACTTTCTGGACTCTCAG ttgtcagtattaacacccaattctctccacactttctgtttcaaccttagGGAGTCATCACCTATCTTTCTGGAGATTGTACCAAAGAAGATGCCAAGCTGGCTCAGGATTTCCTGGACTCTCGTgtgagcgttcatgaattgggatgctggcttaatatcttccaattgggtgt Alignment from Exonerate_protein2genome GGAGTCACCACCTATTTCTCTGGGGATTGTACCATGGAAGATGCTAAGCTGGCCCAGGACTTTCTGGACTCTCAG ttgtcagtattaacacccaattctctccacactttctgtttcaaccttagGGAGTCATCACCTATCTTTCTGGAGATTGTACCAAAGAAGATGCCAAGCTGGCTCAGGATTTCCTGGACTCTCGTgtgagcgttcatgaattgggatgctggcttaatatcttccaattgggtgt Alignment from Exonerate_coding2genome ttgtcagtattaacacccaattctctccacactttctgtttcaaccttagggagtcatcacctatctttctggagattgtaccaaagaagatgccaagctggctcaggatttcctggactctcgtgtgagcgttcatgaattgggatgctggcttaatatcttccaattgggtgt Alignment from GeneWise GGAGTCACCACCTATTTCTCTGGGGATTGTACCATGGAAGATGCTAAGCTGGCCCAGGACTTTCTGGACTCTCAG ttgtcagtattaacacccaattctctccacactttctgtttcaaccttagGGAGTCATCACCTATCTTTCTGGAGATTGTACCAAAGAAGATGCCAAGCTGGCTCAGGATTTCCTGGACTCTCGTgtgagcgttcatgaattgggatgctggcttaatatcttccaattgggtgt #### Drap1_ID987_3 --> 2 - 2 Original Alignment ccCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACct tagtctgaggtggaataataccttacacacttcacattcaaccctggcagcaCAGGCACTTGAGCTTTTCTTAGAGTCCTTGCTTAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGACAATGACCACCTCTCACctgtaaagtttcccaacctgccaggggtgtttaatactatggggaaagaatt Alignment from CESAR ccCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACct tagtctgaggtggaataataccttacacacttcacattcaaccctggcagcaCAGGCACTTGAGCTTTTCTTAGAGTCCTTGCTTAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGACAATGACCACCTCTCACctgtaaagtttcccaacctgccaggggtgtttaatactatggggaaagaatt Alignment from Spaln_aa2Genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT tagtctgaggtggaataataccttacacacttcacattcaaccctggcagCACAGGCACTTGAGCTTTTCTTAGAGTCCTTGCTTAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGACAATGACCACCTCTCACCTgtaaagtttcccaacctgccaggggtgtttaatactatggggaaagaatt Alignment from Spaln_nt2Genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT tagtctgaggtggaataataccttacacacttcacattcaaccctggcagCACAGGCACTTGAGCTTTTCTTAGAGTCCTTGCTTAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGACAATGACCACCTCTCACCTgtaaagtttcccaacctgccaggggtgtttaatactatggggaaagaatt Alignment from Pairagon CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT tagtctgaggtggaataataccttacacacttcacattcaaccctggcagCACAGGCACTTGAGCTTTTCTTAGAGTCCTTGCTTAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGACAATGACCACCTCTCACCTgtaaagtttcccaacctgccaggggtgtttaatactatggggaaagaatt Alignment from Exonerate_protein2genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT tagtctgaggtggaataataccttacacacttcacattcaaccctggcagCACAGGCACTTGAGCTTTTCTTAGAGTCCTTGCTTAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGACAATGACCACCTCTCACCTgtaaagtttcccaacctgccaggggtgtttaatactatggggaaagaatt Alignment from Exonerate_coding2genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT tagtctgaggtggaataataccttacacacttcacattcaaccctggcagCACAGGCACTTGAGCTTTTCTTAGAGTCCTTGCTTAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGACAATGACCACCTCTCACCTgtaaagtttcccaacctgccaggggtgtttaatactatggggaaagaatt Alignment from GeneWise CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT tagtctgaggtggaataataccttacacacttcacattcaaccctggcagCACAGGCACTTGAGCTTTTCTTAGAGTCCTTGCTTAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGACAATGACCACCTCTCACCTgtaaagtttcccaacctgccaggggtgtttaatactatggggaaagaatt #### Dtx4_ID3397_7 --> 0 - 0 Original Alignment GATGGGAGTTTACAGTGCCCAACATGTAAGACCATTTATGGCGTCAAGACAGGCACCCAGCCTCCAGGGAAGATGGAATACCACCTCATCCCCCACTCCTTGCCTGGCCATCCGGACTGCAAGACCATCCGGATCATCTACAGTATCCCCCCTGGCATTCAG ctgaatggagttcaatgtgccatctgtatcaccctcacacccccccccagGATGGGAGCCTACAGTGCCCAACATGTAAAACCATTTATGGTGTCAAGACGGGCACCGAACCCCCAGGGAAGATGGAACATCATCTCATTCCTCACTCCTTGCCTGGCCACCCAGATTGCAAGACAATCCGGATCATCTATAGTATACCCCCCGGCATTCAGgtaattagaaataatcatagctgtagacttatctattatctgaggtgcat Alignment from CESAR GATGGGAGTTTACAGTGCCCAACATGTAAGACCATTTATGGCGTCAAGACAGGCACCCAGCCTCCAGGGAAGATGGAATACCACCTCATCCCCCACTCCTTGCCTGGCCATCCGGACTGCAAGACCATCCGGATCATCTACAGTATCCCCCCTGGCATTCAG ctgaatggagttcaatgtgccatctgtatcaccctcacacccccccccagGATGGGAGCCTACAGTGCCCAACATGTAAAACCATTTATGGTGTCAAGACGGGCACCGAACCCCCAGGGAAGATGGAACATCATCTCATTCCTCACTCCTTGCCTGGCCACCCAGATTGCAAGACAATCCGGATCATCTATAGTATACCCCCCGGCATTCAGgtaattagaaataatcatagctgtagacttatctattatctgaggtgcat Alignment from Spaln_aa2Genome GATGGGAGTTTACAGTGCCCAACATGTAAGACCATTTATGGCGTCAAGACAGGCACCCAGCCTCCAGGGAAGATGGAATACCACCTCATCCCCCACTCCTTGCCTGGCCATCCGGACTGCAAGACCATCCGGATCATCTACAGTATCCCCCCTGGCATTCAG ctgaatggagttcaatgtgccatctgtatcaccctcacacccccccccagGATGGGAGCCTACAGTGCCCAACATGTAAAACCATTTATGGTGTCAAGACGGGCACCGAACCCCCAGGGAAGATGGAACATCATCTCATTCCTCACTCCTTGCCTGGCCACCCAGATTGCAAGACAATCCGGATCATCTATAGTATACCCCCCGGCATTCAGgtaattagaaataatcatagctgtagacttatctattatctgaggtgcat Alignment from Spaln_nt2Genome GATGGGAGTTTACAGTGCCCAACATGTAAGACCATTTATGGCGTCAAGACAGGCACCCAGCCTCCAGGGAAGATGGAATACCACCTCATCCCCCACTCCTTGCCTGGCCATCCGGACTGCAAGACCATCCGGATCATCTACAGTATCCCCCCTGGCATTCAG ctgaatggagttcaatgtgccatctgtatcaccctcacacccccccccagGATGGGAGCCTACAGTGCCCAACATGTAAAACCATTTATGGTGTCAAGACGGGCACCGAACCCCCAGGGAAGATGGAACATCATCTCATTCCTCACTCCTTGCCTGGCCACCCAGATTGCAAGACAATCCGGATCATCTATAGTATACCCCCCGGCATTCAGgtaattagaaataatcatagctgtagacttatctattatctgaggtgcat Alignment from Pairagon GATGGGAGTTTACAGTGCCCAACATGTAAGACCATTTATGGCGTCAAGACAGGCACCCAGCCTCCAGGGAAGATGGAATACCACCTCATCCCCCACTCCTTGCCTGGCCATCCGGACTGCAAGACCATCCGGATCATCTACAGTATCCCCCCTGGCATTCAG ctgaatggagttcaatgtgccatctgtatcaccctcacacccccccccagGATGGGAGCCTACAGTGCCCAACATGTAAAACCATTTATGGTGTCAAGACGGGCACCGAACCCCCAGGGAAGATGGAACATCATCTCATTCCTCACTCCTTGCCTGGCCACCCAGATTGCAAGACAATCCGGATCATCTATAGTATACCCCCCGGCATTCAGgtaattagaaataatcatagctgtagacttatctattatctgaggtgcat Alignment from Exonerate_protein2genome GATGGGAGTTTACAGTGCCCAACATGTAAGACCATTTATGGCGTCAAGACAGGCACCCAGCCTCCAGGGAAGATGGAATACCACCTCATCCCCCACTCCTTGCCTGGCCATCCGGACTGCAAGACCATCCGGATCATCTACAGTATCCCCCCTGGCATTCAG ctgaatggagttcaatgtgccatctgtatcaccctcacacccccccccagGATGGGAGCCTACAGTGCCCAACATGTAAAACCATTTATGGTGTCAAGACGGGCACCGAACCCCCAGGGAAGATGGAACATCATCTCATTCCTCACTCCTTGCCTGGCCACCCAGATTGCAAGACAATCCGGATCATCTATAGTATACCCCCCGGCATTCAGgtaattagaaataatcatagctgtagacttatctattatctgaggtgcat Alignment from Exonerate_coding2genome GATGGGAGTTTACAGTGCCCAACATGTAAGACCATTTATGGCGTCAAGACAGGCACCCAGCCTCCAGGGAAGATGGAATACCACCTCATCCCCCACTCCTTGCCTGGCCATCCGGACTGCAAGACCATCCGGATCATCTACAGTATCCCCCCTGGCATTCAG ctgaatggagttcaatgtgccatctgtatcaccctcacacccccccccagGATGGGAGCCTACAGTGCCCAACATGTAAAACCATTTATGGTGTCAAGACGGGCACCGAACCCCCAGGGAAGATGGAACATCATCTCATTCCTCACTCCTTGCCTGGCCACCCAGATTGCAAGACAATCCGGATCATCTATAGTATACCCCCCGGCATTCAGgtaattagaaataatcatagctgtagacttatctattatctgaggtgcat Alignment from GeneWise GATGGGAGTTTACAGTGCCCAACATGTAAGACCATTTATGGCGTCAAGACAGGCACCCAGCCTCCAGGGAAGATGGAATACCACCTCATCCCCCACTCCTTGCCTGGCCATCCGGACTGCAAGACCATCCGGATCATCTACAGTATCCCCCCTGGCATTCAG ctgaatggagttcaatgtgccatctgtatcaccctcacacccccccccagGATGGGAGCCTACAGTGCCCAACATGTAAAACCATTTATGGTGTCAAGACGGGCACCGAACCCCCAGGGAAGATGGAACATCATCTCATTCCTCACTCCTTGCCTGGCCACCCAGATTGCAAGACAATCCGGATCATCTATAGTATACCCCCCGGCATTCAGgtaattagaaataatcatagctgtagacttatctattatctgaggtgcat #### Dusp5_ID11300_2 --> 2 - 0 Original Alignment ggGGGTATGAGACCTTCTACTCACAGTATCCTGAGTGCTGTGTGGATGTGAAGCCCACCTCACAAGAGAAGATCGAAGGCGAGAGAAGCCTCCTCAGCCAGTGTGGAAAGCCCGTTCTCAGCGTCGCCTACAGACCAGCCTATGACCAG tctgcggacccgatacacaccttgtaatctgagtctccttttctctgcaggaGGTTATGAGACTTACTATTCACAGTACCCCAAGTGCTGTGTGGGAGTAAAGCCTACCTCACAAGAAAAGATAGAAGGAAAGAGAAGTCTCCTCAGCCAGTGTGGAAAGCCAGTTCTTAGTGTTGCCTACAGGCCAGCCTATGACCAGgtgaaaactagacaggccttatagtttgccaatgaggcttgccaacaggg Alignment from CESAR ggGGGTATGAGACCTTCTACTCACAGTATCCTGAGTGCTGTGTGGATGTGAAGCCCACCTCACAAGAGAAGATCGAAGGCGAGAGAAGCCTCCTCAGCCAGTGTGGAAAGCCCGTTCTCAGCGTCGCCTACAGACCAGCCTATGACCAG tctgcggacccgatacacaccttgtaatctgagtctccttttctctgcaggaGGTTATGAGACTTACTATTCACAGTACCCCAAGTGCTGTGTGGGAGTAAAGCCTACCTCACAAGAAAAGATAGAAGGAAAGAGAAGTCTCCTCAGCCAGTGTGGAAAGCCAGTTCTTAGTGTTGCCTACAGGCCAGCCTATGACCAGgtgaaaactagacaggccttatagtttgccaatgaggcttgccaacaggg Alignment from Spaln_aa2Genome GGGGGTATGAGACCTTCTACTCACAGTATCCTGAGTGCTGTGTGGATGTGAAGCCCACCTCACAAGAGAAGATCGAAGGCGAGAGAAGCCTCCTCAGCCAGTGTGGAAAGCCCGTTCTCAGCGTCGCCTACAGACCAGCCTATGACCAG tctgcggacccgatacacaccttgtaatctgagtctccttttctctgcagGAGGTTATGAGACTTACTATTCACAGTACCCCAAGTGCTGTGTGGGAGTAAAGCCTACCTCACAAGAAAAGATAGAAGGAAAGAGAAGTCTCCTCAGCCAGTGTGGAAAGCCAGTTCTTAGTGTTGCCTACAGGCCAGCCTATGACCAGgtgaaaactagacaggccttatagtttgccaatgaggcttgccaacaggg Alignment from Spaln_nt2Genome GGGGGTATGAGACCTTCTACTCACAGTATCCTGAGTGCTGTGTGGATGTGAAGCCCACCTCACAAGAGAAGATCGAAGGCGAGAGAAGCCTCCTCAGCCAGTGTGGAAAGCCCGTTCTCAGCGTCGCCTACAGACCAGCCTATGACCAG tctgcggacccgatacacaccttgtaatctgagtctccttttctctgcagGAGGTTATGAGACTTACTATTCACAGTACCCCAAGTGCTGTGTGGGAGTAAAGCCTACCTCACAAGAAAAGATAGAAGGAAAGAGAAGTCTCCTCAGCCAGTGTGGAAAGCCAGTTCTTAGTGTTGCCTACAGGCCAGCCTATGACCAGgtgaaaactagacaggccttatagtttgccaatgaggcttgccaacaggg Alignment from Pairagon GGGGGTATGAGACCTTCTACTCACAGTATCCTGAGTGCTGTGTGGATGTGAAGCCCACCTCACAAGAGAAGATCGAAGGCGAGAGAAGCCTCCTCAGCCAGTGTGGAAAGCCCGTTCTCAGCGTCGCCTACAGACCAGCCTATGACCAG tctgcggacccgatacacaccttgtaatctgagtctccttttctctgcagGAGGTTATGAGACTTACTATTCACAGTACCCCAAGTGCTGTGTGGGAGTAAAGCCTACCTCACAAGAAAAGATAGAAGGAAAGAGAAGTCTCCTCAGCCAGTGTGGAAAGCCAGTTCTTAGTGTTGCCTACAGGCCAGCCTATGACCAGgtgaaaactagacaggccttatagtttgccaatgaggcttgccaacaggg Alignment from Exonerate_protein2genome GGGGGTATGAGACCTTCTACTCACAGTATCCTGAGTGCTGTGTGGATGTGAAGCCCACCTCACAAGAGAAGATCGAAGGCGAGAGAAGCCTCCTCAGCCAGTGTGGAAAGCCCGTTCTCAGCGTCGCCTACAGACCAGCCTATGACCAG tctgcggacccgatacacaccttgtaatctgagtctccttttctctgcagGAGGTTATGAGACTTACTATTCACAGTACCCCAAGTGCTGTGTGGGAGTAAAGCCTACCTCACAAGAAAAGATAGAAGGAAAGAGAAGTCTCCTCAGCCAGTGTGGAAAGCCAGTTCTTAGTGTTGCCTACAGGCCAGCCTATGACCAGgtgaaaactagacaggccttatagtttgccaatgaggcttgccaacaggg Alignment from Exonerate_coding2genome CCCGCCGGCCCGCGGGTCTACTTCCTTAAAGGGGGGTATGAGACCTTCTACTCACAGTATCCTGAGTGCTGTGTGGATGTGAAGCCCACCTCACAAGAGAAGATCGAAGGCGAGAGAAGCCTCCTCAGCCAGTGTGGAAAGCCCGTTCTCAGCGTCGCCTACAGACCAGCCTATGACCAG tctgcggacccgatacacaCCTTGTAATCTGAGTCTCCTTTTCTCTGCAGGAGGTTATGAGACTTACTATTCACAGTACCCCAAGTGCTGTGTGGGAGTAAAGCCTACCTCACAAGAAAAGATAGAAGGAAAGAGAAGTCTCCTCAGCCAGTGTGGAAAGCCAGTTCTTAGTGTTGCCTACAGGCCAGCCTATGACCAGgtgaaaactagacaggccttatagtttgccaatgaggcttgccaacaggg Alignment from GeneWise GGGGGTATGAGACCTTCTACTCACAGTATCCTGAGTGCTGTGTGGATGTGAAGCCCACCTCACAAGAGAAGATCGAAGGCGAGAGAAGCCTCCTCAGCCAGTGTGGAAAGCCCGTTCTCAGCGTCGCCTACAGACCAGCCTATGACCAG tctgcggacccgatacacaccttgtaatctgagtctccttttctctgcagGAGGTTATGAGACTTACTATTCACAGTACCCCAAGTGCTGTGTGGGAGTAAAGCCTACCTCACAAGAAAAGATAGAAGGAAAGAGAAGTCTCCTCAGCCAGTGTGGAAAGCCAGTTCTTAGTGTTGCCTACAGGCCAGCCTATGACCAGgtgaaaactagacaggccttatagtttgccaatgaggcttgccaacaggg #### Eef1g_ID2562_4 --> 2 - 0 Original Alignment taAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagcctgaggttgttatgtactaaatgcctattctcttatatctaacagtgAGCAATGAGGAACTGCGAGGAAGTGCACCAGAAGCAGCAGCTCAGGTAGCACAGTGGGTTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGAATCATGCACCACAACAAACAGgtacagtggttgtctaccagtagaatgagaatggtaagtgcacattttga Alignment from CESAR taAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagcctgaggttgttatgtactaaatgcctattctcttatatctaacagtgAGCAATGAGGAACTGCGAGGAAGTGCACCAGAAGCAGCAGCTCAGGTAGCACAGTGGGTTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGAATCATGCACCACAACAAACAGgtacagtggttgtctaccagtagaatgagaatggtaagtgcacattttga Alignment from Spaln_aa2Genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagcctgaggttgttatgtactaaatgcctattctcttatatctaacagTGAGCAATGAGGAACTGCGAGGAAGTGCACCAGAAGCAGCAGCTCAGGTAGCACAGTGGGTTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGAATCATGCACCACAACAAACAGgtacagtggttgtctaccagtagaatgagaatggtaagtgcacattttga Alignment from Spaln_nt2Genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagcctgaggttgttatgtactaaatgcctattctcttatatctaacagTGAGCAATGAGGAACTGCGAGGAAGTGCACCAGAAGCAGCAGCTCAGGTAGCACAGTGGGTTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGAATCATGCACCACAACAAACAGgtacagtggttgtctaccagtagaatgagaatggtaagtgcacattttga Alignment from Pairagon TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagcctgaggttgttatgtactaaatgcctattctcttatatctaacagTGAGCAATGAGGAACTGCGAGGAAGTGCACCAGAAGCAGCAGCTCAGGTAGCACAGTGGGTTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGAATCATGCACCACAACAAACAGgtacagtggttgtctaccagtagaatgagaatggtaagtgcacattttga Alignment from Exonerate_protein2genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagcctgaggttgttatgtactaaatgcctattctcttatatctaacagTGAGCAATGAGGAACTGCGAGGAAGTGCACCAGAAGCAGCAGCTCAGGTAGCACAGTGGGTTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGAATCATGCACCACAACAAACAGgtacagtggttgtctaccagtagaatgagaatggtaagtgcacattttga Alignment from Exonerate_coding2genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagcctgaggttgttatgtactaaatgcctattctcttatatctaacagTGAGCAATGAGGAACTGCGAGGAAGTGCACCAGAAGCAGCAGCTCAGGTAGCACAGTGGGTTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGAATCATGCACCACAACAAACAGgtacagtggttgtctaccagtagaatgagaatggtaagtgcacattttga Alignment from GeneWise TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagcctgaggttgttatgtactaaatgcctattctcttatatctaacagTGAGCAATGAGGAACTGCGAGGAAGTGCACCAGAAGCAGCAGCTCAGGTAGCACAGTGGGTTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGAATCATGCACCACAACAAACAGgtacagtggttgtctaccagtagaatgagaatggtaagtgcacattttga #### Eef1g_ID2565_7 --> 2 - 2 Original Alignment ctAAGAAGTTTGCAGAGAGCCAGCCTAAAAAAGATACCCCAAGGAAAGAAAAGGGTTCACGAGAGGAGAAACAGAAACCCCAGGCTGAGCGGAAGGAGGAAAAAAAGGCAGCTGCCCCAGCTCCTGAGGAAGAGATGGATGAGTGTGAGCAGGCATTGGCTGCTGAGCCCAAGGCCAAGGACCCTTTCGCTCACCTGCCCAAGag aaaagcaagaaggaagtgactgtgcattaaaaaattctttgactttatagccAAAAAATTTGCAGAGAGCCAGCCCAAAAAGGATACCCCACGGAAAGAACAGGGATCACGAGAGGAAAAGCAGAAACCCCAGGCTGAACGGAAAGAGGAAAGAAAGGCAGCTGCTCCAGCACCTGAGGAAGAGATGGATGAGTGTGAGCAGGCTTTGGCCACTGAGCCCAAGGCCAAAGATCCTTTTGCTCACCTGCCTAAGaggtcagtttattctctatttatatcttgggtgagtagcaggcaactgtgac Alignment from CESAR ctAAGAAGTTTGCAGAGAGCCAGCCTAAAAAAGATACCCCAAGGAAAGAAAAGGGTTCACGAGAGGAGAAACAGAAACCCCAGGCTGAGCGGAAGGAGGAAAAAAAGGCAGCTGCCCCAGCTCCTGAGGAAGAGATGGATGAGTGTGAGCAGGCATTGGCTGCTGAGCCCAAGGCCAAGGACCCTTTCGCTCACCTGCCCAAGag aaaagcaagaaggaagtgactgtgcattaaaaaattctttgactttatagccAAAAAATTTGCAGAGAGCCAGCCCAAAAAGGATACCCCACGGAAAGAACAGGGATCACGAGAGGAAAAGCAGAAACCCCAGGCTGAACGGAAAGAGGAAAGAAAGGCAGCTGCTCCAGCACCTGAGGAAGAGATGGATGAGTGTGAGCAGGCTTTGGCCACTGAGCCCAAGGCCAAAGATCCTTTTGCTCACCTGCCTAAGaggtcagtttattctctatttatatcttgggtgagtagcaggcaactgtgac Alignment from Spaln_aa2Genome CTAAGAAGTTTGCAGAGAGCCAGCCTAAAAAAGATACCCCAAGGAAAGAAAAGGGTTCACGAGAGGAGAAACAGAAACCCCAGGCTGAGCGGAAGGAGGAAAAAAAGGCAGCTGCCCCAGCTCCTGAGGAAGAGATGGATGAGTGTGAGCAGGCATTGGCTGCTGAGCCCAAGGCCAAGGACCCTTTCGCTCACCTGCCCAAGAG aaaagcaagaaggaagtgactgtgcattaaaaaattctttgactttatagCCAAAAAATTTGCAGAGAGCCAGCCCAAAAAGGATACCCCACGGAAAGAACAGGGATCACGAGAGGAAAAGCAGAAACCCCAGGCTGAACGGAAAGAGGAAAGAAAGGCAGCTGCTCCAGCACCTGAGGAAGAGATGGATGAGTGTGAGCAGGCTTTGGCCACTGAGCCCAAGGCCAAAGATCCTTTTGCTCACCTGCCTAAGAGgtcagtttattctctatttatatcttgggtgagtagcaggcaactgtgac Alignment from Spaln_nt2Genome CTAAGAAGTTTGCAGAGAGCCAGCCTAAAAAAGATACCCCAAGGAAAGAAAAGGGTTCACGAGAGGAGAAACAGAAACCCCAGGCTGAGCGGAAGGAGGAAAAAAAGGCAGCTGCCCCAGCTCCTGAGGAAGAGATGGATGAGTGTGAGCAGGCATTGGCTGCTGAGCCCAAGGCCAAGGACCCTTTCGCTCACCTGCCCAAGAG aaaagcaagaaggaagtgactgtgcattaaaaaattctttgactttatagCCAAAAAATTTGCAGAGAGCCAGCCCAAAAAGGATACCCCACGGAAAGAACAGGGATCACGAGAGGAAAAGCAGAAACCCCAGGCTGAACGGAAAGAGGAAAGAAAGGCAGCTGCTCCAGCACCTGAGGAAGAGATGGATGAGTGTGAGCAGGCTTTGGCCACTGAGCCCAAGGCCAAAGATCCTTTTGCTCACCTGCCTAAGAGgtcagtttattctctatttatatcttgggtgagtagcaggcaactgtgac Alignment from Pairagon CTAAGAAGTTTGCAGAGAGCCAGCCTAAAAAAGATACCCCAAGGAAAGAAAAGGGTTCACGAGAGGAGAAACAGAAACCCCAGGCTGAGCGGAAGGAGGAAAAAAAGGCAGCTGCCCCAGCTCCTGAGGAAGAGATGGATGAGTGTGAGCAGGCATTGGCTGCTGAGCCCAAGGCCAAGGACCCTTTCGCTCACCTGCCCAAGAG aaaagcaagaaggaagtgactgtgcattaaaaaattctttgactttatagCCAAAAAATTTGCAGAGAGCCAGCCCAAAAAGGATACCCCACGGAAAGAACAGGGATCACGAGAGGAAAAGCAGAAACCCCAGGCTGAACGGAAAGAGGAAAGAAAGGCAGCTGCTCCAGCACCTGAGGAAGAGATGGATGAGTGTGAGCAGGCTTTGGCCACTGAGCCCAAGGCCAAAGATCCTTTTGCTCACCTGCCTAAGAGgtcagtttattctctatttatatcttgggtgagtagcaggcaactgtgac Alignment from Exonerate_protein2genome CTAAGAAGTTTGCAGAGAGCCAGCCTAAAAAAGATACCCCAAGGAAAGAAAAGGGTTCACGAGAGGAGAAACAGAAACCCCAGGCTGAGCGGAAGGAGGAAAAAAAGGCAGCTGCCCCAGCTCCTGAGGAAGAGATGGATGAGTGTGAGCAGGCATTGGCTGCTGAGCCCAAGGCCAAGGACCCTTTCGCTCACCTGCCCAAGAG aaaagcaagaaggaagtgactgtgcattaaaaaattctttgactttatagCCAAAAAATTTGCAGAGAGCCAGCCCAAAAAGGATACCCCACGGAAAGAACAGGGATCACGAGAGGAAAAGCAGAAACCCCAGGCTGAACGGAAAGAGGAAAGAAAGGCAGCTGCTCCAGCACCTGAGGAAGAGATGGATGAGTGTGAGCAGGCTTTGGCCACTGAGCCCAAGGCCAAAGATCCTTTTGCTCACCTGCCTAAGAGgtcagtttattctctatttatatcttgggtgagtagcaggcaactgtgac Alignment from Exonerate_coding2genome CTAAGAAGTTTGCAGAGAGCCAGCCTAAAAAAGATACCCCAAGGAAAGAAAAGGGTTCACGAGAGGAGAAACAGAAACCCCAGGCTGAGCGGAAGGAGGAAAAAAAGGCAGCTGCCCCAGCTCCTGAGGAAGAGATGGATGAGTGTGAGCAGGCATTGGCTGCTGAGCCCAAGGCCAAGGACCCTTTCGCTCACCTGCCCAAGAG aaaagcaagaaggaagtgactgtgcattaaaaaattctttgactttatagCCAAAAAATTTGCAGAGAGCCAGCCCAAAAAGGATACCCCACGGAAAGAACAGGGATCACGAGAGGAAAAGCAGAAACCCCAGGCTGAACGGAAAGAGGAAAGAAAGGCAGCTGCTCCAGCACCTGAGGAAGAGATGGATGAGTGTGAGCAGGCTTTGGCCACTGAGCCCAAGGCCAAAGATCCTTTTGCTCACCTGCCTAAGAGgtcagtttattctctatttatatcttgggtgagtagcaggcaactgtgac Alignment from GeneWise CTAAGAAGTTTGCAGAGAGCCAGCCTAAAAAAGATACCCCAAGGAAAGAAAAGGGTTCACGAGAGGAGAAACAGAAACCCCAGGCTGAGCGGAAGGAGGAAAAAAAGGCAGCTGCCCCAGCTCCTGAGGAAGAGATGGATGAGTGTGAGCAGGCATTGGCTGCTGAGCCCAAGGCCAAGGACCCTTTCGCTCACCTGCCCAAGAG aaaagcaagaaggaagtgactgtgcattaaaaaattctttgactttatagCCAAAAAATTTGCAGAGAGCCAGCCCAAAAAGGATACCCCACGGAAAGAACAGGGATCACGAGAGGAAAAGCAGAAACCCCAGGCTGAACGGAAAGAGGAAAGAAAGGCAGCTGCTCCAGCACCTGAGGAAGAGATGGATGAGTGTGAGCAGGCTTTGGCCACTGAGCCCAAGGCCAAAGATCCTTTTGCTCACCTGCCTAAGAGgtcagtttattctctatttatatcttgggtgagtagcaggcaactgtgac #### Efemp2_ID1036_9 --> 1 - 0 Original Alignment cCGCTGCCTCTGCCCTGCCTCCAATCCCCTTTGTCGAGAGCAGCCTTCATCCATTGTGCACCGCTACATGAGCATCACCTCAGAGCGAAGTGTGCCTGCTGACGTGTTTCAGATCCAGGCAACCTCTGTCTACCCTGGTGCCTACAATGCCTTTCAGATCCGTTCTGGAAACACACAGGGGGACTTCTACATTAGG tatggtaattcaggccttacctctacttttatttctgtttttcttctcagtCGTTGCCTCTGCCCTGCCTCTATCCCCCTCTGTCGAGATCAGCCTTCATCTATTGTACACCATTATATGAGTATCACCTCAGAACGCAGTGTGCCCGATGACATTTTCCAAATTCAGGCAACCTCTGTGTACCCTGGTGCATACAATGCTTTTCAGATCTGTTCTGGCATCACCCAGGGGGAATTCTATATTAGGgtgagttcacactgcttatattttaatattttctaaagaacatttggtac Alignment from CESAR cCGCTGCCTCTGCCCTGCCTCCAATCCCCTTTGTCGAGAGCAGCCTTCATCCATTGTGCACCGCTACATGAGCATCACCTCAGAGCGAAGTGTGCCTGCTGACGTGTTTCAGATCCAGGCAACCTCTGTCTACCCTGGTGCCTACAATGCCTTTCAGATCCGTTCTGGAAACACACAGGGGGACTTCTACATTAGG tatggtaattcaggccttacctctacttttatttctgtttttcttctcagtCGTTGCCTCTGCCCTGCCTCTATCCCCCTCTGTCGAGATCAGCCTTCATCTATTGTACACCATTATATGAGTATCACCTCAGAACGCAGTGTGCCCGATGACATTTTCCAAATTCAGGCAACCTCTGTGTACCCTGGTGCATACAATGCTTTTCAGATCTGTTCTGGCATCACCCAGGGGGAATTCTATATTAGGgtgagttcacactgcttatattttaatattttctaaagaacatttggtac Alignment from Spaln_aa2Genome CCGCTGCCTCTGCCCTGCCTCCAATCCCCTTTGTCGAGAGCAGCCTTCATCCATTGTGCACCGCTACATGAGCATCACCTCAGAGCGAAGTGTGCCTGCTGACGTGTTTCAGATCCAGGCAACCTCTGTCTACCCTGGTGCCTACAATGCCTTTCAGATCCGTTCTGGAAACACACAGGGGGACTTCTACATTAGG tatggtaattcaggccttacctctacttttatttctgtttttcttctcagTCGTTGCCTCTGCCCTGCCTCTATCCCCCTCTGTCGAGATCAGCCTTCATCTATTGTACACCATTATATGAGTATCACCTCAGAACGCAGTGTGCCCGATGACATTTTCCAAATTCAGGCAACCTCTGTGTACCCTGGTGCATACAATGCTTTTCAGATCTGTTCTGGCATCACCCAGGGGGAATTCTATATTAGGgtgagttcacactgcttatattttaatattttctaaagaacatttggtac Alignment from Spaln_nt2Genome CCGCTGCCTCTGCCCTGCCTCCAATCCCCTTTGTCGAGAGCAGCCTTCATCCATTGTGCACCGCTACATGAGCATCACCTCAGAGCGAAGTGTGCCTGCTGACGTGTTTCAGATCCAGGCAACCTCTGTCTACCCTGGTGCCTACAATGCCTTTCAGATCCGTTCTGGAAACACACAGGGGGACTTCTACATTAGG tatggtaattcaggccttacctctacttttatttctgtttttcttctcagTCGTTGCCTCTGCCCTGCCTCTATCCCCCTCTGTCGAGATCAGCCTTCATCTATTGTACACCATTATATGAGTATCACCTCAGAACGCAGTGTGCCCGATGACATTTTCCAAATTCAGGCAACCTCTGTGTACCCTGGTGCATACAATGCTTTTCAGATCTGTTCTGGCATCACCCAGGGGGAATTCTATATTAGGgtgagttcacactgcttatattttaatattttctaaagaacatttggtac Alignment from Pairagon CCGCTGCCTCTGCCCTGCCTCCAATCCCCTTTGTCGAGAGCAGCCTTCATCCATTGTGCACCGCTACATGAGCATCACCTCAGAGCGAAGTGTGCCTGCTGACGTGTTTCAGATCCAGGCAACCTCTGTCTACCCTGGTGCCTACAATGCCTTTCAGATCCGTTCTGGAAACACACAGGGGGACTTCTACATTAGG tatggtaattcaggccttacctctacttttatttctgtttttcttctcagTCGTTGCCTCTGCCCTGCCTCTATCCCCCTCTGTCGAGATCAGCCTTCATCTATTGTACACCATTATATGAGTATCACCTCAGAACGCAGTGTGCCCGATGACATTTTCCAAATTCAGGCAACCTCTGTGTACCCTGGTGCATACAATGCTTTTCAGATCTGTTCTGGCATCACCCAGGGGGAATTCTATATTAGGgtgagttcacactgcttatattttaatattttctaaagaacatttggtac Alignment from Exonerate_protein2genome CCGCTGCCTCTGCCCTGCCTCCAATCCCCTTTGTCGAGAGCAGCCTTCATCCATTGTGCACCGCTACATGAGCATCACCTCAGAGCGAAGTGTGCCTGCTGACGTGTTTCAGATCCAGGCAACCTCTGTCTACCCTGGTGCCTACAATGCCTTTCAGATCCGTTCTGGAAACACACAGGGGGACTTCTACATTAGG tatggtaattcaggccttacctctacttttatttctgtttttcttctcagTCGTTGCCTCTGCCCTGCCTCTATCCCCCTCTGTCGAGATCAGCCTTCATCTATTGTACACCATTATATGAGTATCACCTCAGAACGCAGTGTGCCCGATGACATTTTCCAAATTCAGGCAACCTCTGTGTACCCTGGTGCATACAATGCTTTTCAGATCTGTTCTGGCATCACCCAGGGGGAATTCTATATTAGGgtgagttcacactgcttatattttaatattttctaaagaacatttggtac Alignment from Exonerate_coding2genome CCGCTGCCTCTGCCCTGCCTCCAATCCCCTTTGTCGAGAGCAGCCTTCATCCATTGTGCACCGCTACATGAGCATCACCTCAGAGCGAAGTGTGCCTGCTGACGTGTTTCAGATCCAGGCAACCTCTGTCTACCCTGGTGCCTACAATGCCTTTCAGATCCGTTCTGGAAACACACAGGGGGACTTCTACATTAGG tatggtaattcaggccttacctctacttttatttctgtttttcttctcagTCGTTGCCTCTGCCCTGCCTCTATCCCCCTCTGTCGAGATCAGCCTTCATCTATTGTACACCATTATATGAGTATCACCTCAGAACGCAGTGTGCCCGATGACATTTTCCAAATTCAGGCAACCTCTGTGTACCCTGGTGCATACAATGCTTTTCAGATCTGTTCTGGCATCACCCAGGGGGAATTCTATATTAGGgtgagttcacactgcttatattttaatattttctaaagaacatttggtac Alignment from GeneWise CCGCTGCCTCTGCCCTGCCTCCAATCCCCTTTGTCGAGAGCAGCCTTCATCCATTGTGCACCGCTACATGAGCATCACCTCAGAGCGAAGTGTGCCTGCTGACGTGTTTCAGATCCAGGCAACCTCTGTCTACCCTGGTGCCTACAATGCCTTTCAGATCCGTTCTGGAAACACACAGGGGGACTTCTACATTAGG tatggtaattcaggccttacctctacttttatttctgtttttcttctcagTCGTTGCCTCTGCCCTGCCTCTATCCCCCTCTGTCGAGATCAGCCTTCATCTATTGTACACCATTATATGAGTATCACCTCAGAACGCAGTGTGCCCGATGACATTTTCCAAATTCAGGCAACCTCTGTGTACCCTGGTGCATACAATGCTTTTCAGATCTGTTCTGGCATCACCCAGGGGGAATTCTATATTAGGgtgagttcacactgcttatattttaatattttctaaagaacatttggtac #### Ehbp1l1_ID1217_18 --> 2 - 2 Original Alignment agTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGat ttcttcatagcagggcagaaagaagtactaccttttttgatctctttcagaaTGGCATACAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTCGAGGGACTTGTGTCTTTAGTGAACCAGAGGGAAGAGCTAGTTGGGGATTTAGATCAGAAGGAGCAGgtgtacccgcgtgagcatgctttgtcctggggaactcccattgaggagtccc Alignment from CESAR agTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGat ttcttcatagcagggcagaaagaagtactaccttttttgatctctttcagaaTGGCATACAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTCGAGGGACTTGTGTCTTTAGTGAACCAGAGGGAAGAGCTAGTTGGGGATTTAGATCAGAAGGAGCAGgtgtacccgcgtgagcatgctttgtcctggggaactcccattgaggagtccc Alignment from Spaln_aa2Genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT ttcttcatagcagggcagaaagaagtactaccttttttgatctctttcagAATGGCATACAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTCGAGGGACTTGTGTCTTTAGTGAACCAGAGGGAAGAGCTAGTTGGGGATTTAGATCAGAAGGAGCAGGTgtacccgcgtgagcatgctttgtcctggggaactcccattgaggagtccc Alignment from Spaln_nt2Genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT ttcttcatagcagggcagaaagaagtactaccttttttgatctctttcagAATGGCATACAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTCGAGGGACTTGTGTCTTTAGTGAACCAGAGGGAAGAGCTAGTTGGGGATTTAGATCAGAAGGAGCAGGTgtacccgcgtgagcatgctttgtcctggggaactcccattgaggagtccc Alignment from Pairagon AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT ttcttcatagcagggcagaaagaagtactaccttttttgatctctttcagAATGGCATACAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTCGAGGGACTTGTGTCTTTAGTGAACCAGAGGGAAGAGCTAGTTGGGGATTTAGATCAGAAGGAGCAGGTgtacccgcgtgagcatgctttgtcctggggaactcccattgaggagtccc Alignment from Exonerate_protein2genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT ttcttcatagcagggcagaaagaagtactaccttttttgatctctttcagAATGGCATACAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTCGAGGGACTTGTGTCTTTAGTGAACCAGAGGGAAGAGCTAGTTGGGGATTTAGATCAGAAGGAGCAGGTgtacccgcgtgagcatgctttgtcctggggaactcccattgaggagtccc Alignment from Exonerate_coding2genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT ttcttcatagcagggcagaaagaagtactaccttttttgatctctttcagAATGGCATACAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTCGAGGGACTTGTGTCTTTAGTGAACCAGAGGGAAGAGCTAGTTGGGGATTTAGATCAGAAGGAGCAGGTgtacccgcgtgagcatgctttgtcctggggaactcccattgaggagtccc Alignment from GeneWise AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT ttcttcatagcagggcagaaagaagtactaccttttttgatctctttcagAATGGCATACAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTCGAGGGACTTGTGTCTTTAGTGAACCAGAGGGAAGAGCTAGTTGGGGATTTAGATCAGAAGGAGCAGGTgtacccgcgtgagcatgctttgtcctggggaactcccattgaggagtccc #### Ehbp1l1_ID1227_8 --> 2 - 2 Original Alignment ctGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAag ggaaggcaatccgaacctgcaaaagctgcattccattaaactgtaattagctGCCAGACCCTCTAGTGCTGAAAAGACAAGTCCTGCCCCAGTAAGTGCCCCTGCGCCCCAAGTTAGAGCTATCCGGGGCCAAGGG---GATCCAACTGCCATGACTGATGGA---GTGGGGCATGAGACCCTAGAGCCCCCAGCGACTCCACCTGAGACAaggtaagtatcatctcagcttctcaagcaagatcgcagcttctgaagcaaga Alignment from CESAR ctGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAag ggaaggcaatccgaacctgcaaaagctgcattccattaaactgtaattagctGCCAGACCCTCTAGTGCTGAAAAGACAAGTCCTGCCCCAGTAAGTGCCCCTGCGCCCCAAGTTAGAGCTATCCGGGGCCAAGGG---GATCCAACTGCCATGACTGATGGA---GTGGGGCATGAGACCCTAGAGCCCCCAGCGACTCCACCTGAGACAaggtaagtatcatctcagcttctcaagcaagatcgcagcttctgaagcaaga Alignment from Spaln_aa2Genome CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG ggaaggcaatccgaacctgcaaaagctgcattccattaaactgtaattagCTGCCAGACCCTCTAGTGCTGAAAAGACAAGTCCTGCCCCAGTAAGTGCCCCTGCGCCCCAAGTTAGAGCTATCCGGGGCCAAGGG---GATCCAACTGCCATGACTGATGGA---GTGGGGCATGAGACCCTAGAGCCCCCAGCGACTCCACCTGAGACAAGgtaagtatcatctcagcttctcaagcaagatcgcagcttctgaagcaaga Alignment from Spaln_nt2Genome CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG ggaaggcaatccgaacctgcaaaagctgcattccattaaactgtaattagCTGCCAGACCCTCTAGTGCTGAAAAGACAAGTCCTGCCCCAGTAAGTGCCCCTGCGCCCCAAGTTAGAGCTATCCGGGGCCAAGGG---GATCCAACTGCCATGACTGATGG---AGTGGGGCATGAGACCCTAGAGCCCCCAGCGACTCCACCTGAGACAAGgtaagtatcatctcagcttctcaagcaagatcgcagcttctgaagcaaga Alignment from Pairagon CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG ggaaggcaatccgaacctgcaaaagctgcattccattaaactgtaattagCTGCCAGACCCTCTAGTGCTGAAAAGACAAGTCCTGCCCCAGTAAGTGCCCCTGCGCCCCAAGTTAGAGCTATCCGGGGCCAAGGG---GATCCAACTGCCATGACTGATGG---AGTGGGGCATGAGACCCTAGAGCCCCCAGCGACTCCACCTGAGACAAGgtaagtatcatctcagcttctcaagcaagatcgcagcttctgaagcaaga Alignment from Exonerate_protein2genome ggaaggcaatccgaacctgcaaaagctgcattccattaaactgtaattagctgccagaccctctagtgctgaaaagacaagtcctgccccagtaagtgcccctgcgccccaagttagagctatccggggccaaggggatccaactgccatgactgatggagtggggcatgagaccctagagcccccagcgactccacctgagacaaggtaagtatcatctcagcttctcaagcaagatcgcagcttctgaagcaaga Alignment from Exonerate_coding2genome ggaaggcaatccgaacctgcaaaagctgcattccattaaactgtaattagctgccagaccctctagtgctgaaaagacaagtcctgccccagtaagtgcccctgcgccccaagttagagctatccggggccaaggggatccaactgccatgactgatggagtggggcatgagaccctagagcccccagcgactccacctgagacaaggtaagtatcatctcagcttctcaagcaagatcgcagcttctgaagcaaga Alignment from GeneWise CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACA-- ggaaggcaatccgaacctgcaaaagctgcattccattaaactgtaattagCTGCCAGACCCTCTAGTGCTGAAAAGACAAGTCCTGCCCCAGTAAGTGCCCCTGCGCCCCAAGTTAGAGCTATCCGGGGCCAAGGG---GATCCAACTGCCATGACTGATGGA---GTGGGGCATGAGACCCTAGAGCCCCCAGCGACTCCACCTGAGACAAGgtaagtatcatctcagcttctcaagcaagatcgcagcttctgaagcaaga #### Eif3a_ID13315_15 --> 0 - 0 Original Alignment ATCACTACAATGCAGCTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGTTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTACGAG aatgaaacagagaagtttataaaaaggtttcaacttgttctccttcctagATTACTACAATGCAACTAGAACGTGAAAAAGCATTGGAGCATAAAAATAGGATGTCAAGAATGCTGGAGGACAGAGATTTATTTGTCATGCGCCTCAAAGCTGCCCGGCAGTCCGTTTGTGAGgtgaggatgtctagcattgcattatgcagaagttattatatacttctaga Alignment from CESAR ATCACTACAATGCAGCTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGTTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTACGAG aatgaaacagagaagtttataaaaaggtttcaacttgttctccttcctagATTACTACAATGCAACTAGAACGTGAAAAAGCATTGGAGCATAAAAATAGGATGTCAAGAATGCTGGAGGACAGAGATTTATTTGTCATGCGCCTCAAAGCTGCCCGGCAGTCCGTTTGTGAGgtgaggatgtctagcattgcattatgcagaagttattatatacttctaga Alignment from Spaln_aa2Genome ATCACTACAATGCAGCTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGTTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTACGAG aatgaaacagagaagtttataaaaaggtttcaacttgttctccttcctagATTACTACAATGCAACTAGAACGTGAAAAAGCATTGGAGCATAAAAATAGGATGTCAAGAATGCTGGAGGACAGAGATTTATTTGTCATGCGCCTCAAAGCTGCCCGGCAGTCCGTTTGTGAGgtgaggatgtctagcattgcattatgcagaagttattatatacttctaga Alignment from Spaln_nt2Genome ATCACTACAATGCAGCTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGTTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTACGAG aatgaaacagagaagtttataaaaaggtttcaacttgttctccttcctagATTACTACAATGCAACTAGAACGTGAAAAAGCATTGGAGCATAAAAATAGGATGTCAAGAATGCTGGAGGACAGAGATTTATTTGTCATGCGCCTCAAAGCTGCCCGGCAGTCCGTTTGTGAGgtgaggatgtctagcattgcattatgcagaagttattatatacttctaga Alignment from Pairagon ATCACTACAATGCAGCTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGTTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTACGAG aatgaaacagagaagtttataaaaaggtttcaacttgttctccttcctagATTACTACAATGCAACTAGAACGTGAAAAAGCATTGGAGCATAAAAATAGGATGTCAAGAATGCTGGAGGACAGAGATTTATTTGTCATGCGCCTCAAAGCTGCCCGGCAGTCCGTTTGTGAGgtgaggatgtctagcattgcattatgcagaagttattatatacttctaga Alignment from Exonerate_protein2genome ATCACTACAATGCAGCTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGTTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTACGAG aatgaaacagagaagtttataaaaaggtttcaacttgttctccttcctagATTACTACAATGCAACTAGAACGTGAAAAAGCATTGGAGCATAAAAATAGGATGTCAAGAATGCTGGAGGACAGAGATTTATTTGTCATGCGCCTCAAAGCTGCCCGGCAGTCCGTTTGTGAGgtgaggatgtctagcattgcattatgcagaagttattatatacttctaga Alignment from Exonerate_coding2genome ATCACTACAATGCAGCTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGTTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTACGAG aatgaaacagagaagtttataaaaaggtttcaacttgttctccttcctagATTACTACAATGCAACTAGAACGTGAAAAAGCATTGGAGCATAAAAATAGGATGTCAAGAATGCTGGAGGACAGAGATTTATTTGTCATGCGCCTCAAAGCTGCCCGGCAGTCCGTTTGTGAGgtgaggatgtctagcattgcattatgcagaagttattatatacttctaga Alignment from GeneWise ATCACTACAATGCAGCTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGTTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTACGAG aatgaaacagagaagtttataaaaaggtttcaacttgttctccttcctagATTACTACAATGCAACTAGAACGTGAAAAAGCATTGGAGCATAAAAATAGGATGTCAAGAATGCTGGAGGACAGAGATTTATTTGTCATGCGCCTCAAAGCTGCCCGGCAGTCCGTTTGTGAGgtgaggatgtctagcattgcattatgcagaagttattatatacttctaga #### Eif3a_ID13319_11 --> 0 - 0 Original Alignment GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttgacttaatagtctgaacattcagtctctttgctggtgtgtactcagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAACTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTACAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACTGCTATGTCCTCAGTGCTTGCCAAAGCACTAGGAATTATTAGGCCTGCACACATTTTGgtgagtgtctagggcaagaatgatttgcaccagaattatgagggactcag Alignment from CESAR GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttgacttaatagtctgaacattcagtctctttgctggtgtgtactcagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAACTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTACAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACTGCTATGTCCTCAGTGCTTGCCAAAGCACTAGGAATTATTAGGCCTGCACACATTTTGgtgagtgtctagggcaagaatgatttgcaccagaattatgagggactcag Alignment from Spaln_aa2Genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttgacttaatagtctgaacattcagtctctttgctggtgtgtactcagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAACTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTACAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACTGCTATGTCCTCAGTGCTTGCCAAAGCACTAGGAATTATTAGGCCTGCACACATTTTGgtgagtgtctagggcaagaatgatttgcaccagaattatgagggactcag Alignment from Spaln_nt2Genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttgacttaatagtctgaacattcagtctctttgctggtgtgtactcagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAACTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTACAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACTGCTATGTCCTCAGTGCTTGCCAAAGCACTAGGAATTATTAGGCCTGCACACATTTTGgtgagtgtctagggcaagaatgatttgcaccagaattatgagggactcag Alignment from Pairagon GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttgacttaatagtctgaacattcagtctctttgctggtgtgtactcagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAACTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTACAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACTGCTATGTCCTCAGTGCTTGCCAAAGCACTAGGAATTATTAGGCCTGCACACATTTTGgtgagtgtctagggcaagaatgatttgcaccagaattatgagggactcag Alignment from Exonerate_protein2genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttgacttaatagtctgaacattcagtctctttgctggtgtgtactcagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAACTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTACAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACTGCTATGTCCTCAGTGCTTGCCAAAGCACTAGGAATTATTAGGCCTGCACACATTTTGgtgagtgtctagggcaagaatgatttgcaccagaattatgagggactcag Alignment from Exonerate_coding2genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttgacttaatagtctgaacattcagtctctttgctggtgtgtactcagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAACTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTACAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACTGCTATGTCCTCAGTGCTTGCCAAAGCACTAGGAATTATTAGGCCTGCACACATTTTGgtgagtgtctagggcaagaatgatttgcaccagaattatgagggactcag Alignment from GeneWise GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG agttgacttaatagtctgaacattcagtctctttgctggtgtgtactcagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAACTATGCAACTCGAGAAGATGCCCCAGTTGGCCCACATCTACAAGGTATGCCTTCGGAACAGATAAGGAACCAGCTCACTGCTATGTCCTCAGTGCTTGCCAAAGCACTAGGAATTATTAGGCCTGCACACATTTTGgtgagtgtctagggcaagaatgatttgcaccagaattatgagggactcag #### Eif3a_ID13322_8 --> 0 - 0 Original Alignment GTCAGGTTCAGTGTGCTACAGTATGTTGTCCCAGAAGTGAAAGACCTTTACAACTGGTTGGAGGTGGAATTCAACCCACTAAAACTCTGTGAGAGAGTTACAAAG atttattatgtggttaatgaacttttctgagcctgcactgtcccctgcagGTCAGGTTCAGTGTACTGCAGTACATTGTTCCAGAGGTGAAAGAACTTTACAACTGGCTGGAGGTAGAACTCAACCCTCTAAGAATTTGTGAGAGAGTTACAAAGgtaaagagggacatacaccattccctgtttagatggctacttacatagca Alignment from CESAR GTCAGGTTCAGTGTGCTACAGTATGTTGTCCCAGAAGTGAAAGACCTTTACAACTGGTTGGAGGTGGAATTCAACCCACTAAAACTCTGTGAGAGAGTTACAAAG atttattatgtggttaatgaacttttctgagcctgcactgtcccctgcagGTCAGGTTCAGTGTACTGCAGTACATTGTTCCAGAGGTGAAAGAACTTTACAACTGGCTGGAGGTAGAACTCAACCCTCTAAGAATTTGTGAGAGAGTTACAAAGgtaaagagggacatacaccattccctgtttagatggctacttacatagca Alignment from Spaln_aa2Genome GTCAGGTTCAGTGTGCTACAGTATGTTGTCCCAGAAGTGAAAGACCTTTACAACTGGTTGGAGGTGGAATTCAACCCACTAAAACTCTGTGAGAGAGTTACAAAG atttattatgtggttaatgaacttttctgagcctgcactgtcccctgcagGTCAGGTTCAGTGTACTGCAGTACATTGTTCCAGAGGTGAAAGAACTTTACAACTGGCTGGAGGTAGAACTCAACCCTCTAAGAATTTGTGAGAGAGTTACAAAGgtaaagagggacatacaccattccctgtttagatggctacttacatagca Alignment from Spaln_nt2Genome GTCAGGTTCAGTGTGCTACAGTATGTTGTCCCAGAAGTGAAAGACCTTTACAACTGGTTGGAGGTGGAATTCAACCCACTAAAACTCTGTGAGAGAGTTACAAAG atttattatgtggttaatgaacttttctgagcctgcactgtcccctgcagGTCAGGTTCAGTGTACTGCAGTACATTGTTCCAGAGGTGAAAGAACTTTACAACTGGCTGGAGGTAGAACTCAACCCTCTAAGAATTTGTGAGAGAGTTACAAAGgtaaagagggacatacaccattccctgtttagatggctacttacatagca Alignment from Pairagon GTCAGGTTCAGTGTGCTACAGTATGTTGTCCCAGAAGTGAAAGACCTTTACAACTGGTTGGAGGTGGAATTCAACCCACTAAAACTCTGTGAGAGAGTTACAAAG atttattatgtggttaatgaacttttctgagcctgcactgtcccctgcagGTCAGGTTCAGTGTACTGCAGTACATTGTTCCAGAGGTGAAAGAACTTTACAACTGGCTGGAGGTAGAACTCAACCCTCTAAGAATTTGTGAGAGAGTTACAAAGgtaaagagggacatacaccattccctgtttagatggctacttacatagca Alignment from Exonerate_protein2genome GTCAGGTTCAGTGTGCTACAGTATGTTGTCCCAGAAGTGAAAGACCTTTACAACTGGTTGGAGGTGGAATTCAACCCACTAAAACTCTGTGAGAGAGTTACAAAG atttattatgtggttaatgaacttttctgagcctgcactgtcccctgcagGTCAGGTTCAGTGTACTGCAGTACATTGTTCCAGAGGTGAAAGAACTTTACAACTGGCTGGAGGTAGAACTCAACCCTCTAAGAATTTGTGAGAGAGTTACAAAGgtaaagagggacatacaccattccctgtttagatggctacttacatagca Alignment from Exonerate_coding2genome GTCAGGTTCAGTGTGCTACAGTATGTTGTCCCAGAAGTGAAAGACCTTTACAACTGGTTGGAGGTGGAATTCAACCCACTAAAACTCTGTGAGAGAGTTACAAAG atttattatgtggttaatgaacttttctgagcctgcactgtcccctgcagGTCAGGTTCAGTGTACTGCAGTACATTGTTCCAGAGGTGAAAGAACTTTACAACTGGCTGGAGGTAGAACTCAACCCTCTAAGAATTTGTGAGAGAGTTACAAAGgtaaagagggacatacaccattccctgtttagatggctacttacatagca Alignment from GeneWise GTCAGGTTCAGTGTGCTACAGTATGTTGTCCCAGAAGTGAAAGACCTTTACAACTGGTTGGAGGTGGAATTCAACCCACTAAAACTCTGTGAGAGAGTTACAAAG atttattatgtggttaatgaacttttctgagcctgcactgtcccctgcagGTCAGGTTCAGTGTACTGCAGTACATTGTTCCAGAGGTGAAAGAACTTTACAACTGGCTGGAGGTAGAACTCAACCCTCTAAGAATTTGTGAGAGAGTTACAAAGgtaaagagggacatacaccattccctgtttagatggctacttacatagca #### Eif3a_ID13323_7 --> 1 - 0 Original Alignment aATGTCTACTAGAGTCCTTTTGGCGACTCTTTCCATTCCTATTACTCCTGAGCGAACTGATATTGCTCGACTTTTGGATATGGATGGTATTATAGTTGAGAAGCAGCGACGCCTTGCCACATTGCTAGGTCTTCAAGCCCCACCCACACGAATCGGCCTAATTAATGATATG caggtgggggcctaattataagctgaactgtctgcatttcccatttcaagaATGTCTACTAGAGTTCTTCTGGCAACACTTTCCATTCCTGTAACCCCTGAACGAACAGATATTGCTCGCCTTCTGGATATGGATGGAATTATAGTCGAGAAGCAGCGAGACCTTGCCACATTGTTAGGTCTTGAAGCCCCACCCACACAAATCGGCCTGATTAATGACATGgtaaaagttggtaatgattgccttttgaaagaaggtctaagctgtagtat Alignment from CESAR aATGTCTACTAGAGTCCTTTTGGCGACTCTTTCCATTCCTATTACTCCTGAGCGAACTGATATTGCTCGACTTTTGGATATGGATGGTATTATAGTTGAGAAGCAGCGACGCCTTGCCACATTGCTAGGTCTTCAAGCCCCACCCACACGAATCGGCCTAATTAATGATATG caggtgggggcctaattataagctgaactgtctgcatttcccatttcaagaATGTCTACTAGAGTTCTTCTGGCAACACTTTCCATTCCTGTAACCCCTGAACGAACAGATATTGCTCGCCTTCTGGATATGGATGGAATTATAGTCGAGAAGCAGCGAGACCTTGCCACATTGTTAGGTCTTGAAGCCCCACCCACACAAATCGGCCTGATTAATGACATGgtaaaagttggtaatgattgccttttgaaagaaggtctaagctgtagtat Alignment from Spaln_aa2Genome AATGTCTACTAGAGTCCTTTTGGCGACTCTTTCCATTCCTATTACTCCTGAGCGAACTGATATTGCTCGACTTTTGGATATGGATGGTATTATAGTTGAGAAGCAGCGACGCCTTGCCACATTGCTAGGTCTTCAAGCCCCACCCACACGAATCGGCCTAATTAATGATATG caggtgggggcctaattataagctgaactgtctgcatttcccatttcaagAATGTCTACTAGAGTTCTTCTGGCAACACTTTCCATTCCTGTAACCCCTGAACGAACAGATATTGCTCGCCTTCTGGATATGGATGGAATTATAGTCGAGAAGCAGCGAGACCTTGCCACATTGTTAGGTCTTGAAGCCCCACCCACACAAATCGGCCTGATTAATGACATGgtaaaagttggtaatgattgccttttgaaagaaggtctaagctgtagtat Alignment from Spaln_nt2Genome AATGTCTACTAGAGTCCTTTTGGCGACTCTTTCCATTCCTATTACTCCTGAGCGAACTGATATTGCTCGACTTTTGGATATGGATGGTATTATAGTTGAGAAGCAGCGACGCCTTGCCACATTGCTAGGTCTTCAAGCCCCACCCACACGAATCGGCCTAATTAATGATATG caggtgggggcctaattataagctgaactgtctgcatttcccatttcaagAATGTCTACTAGAGTTCTTCTGGCAACACTTTCCATTCCTGTAACCCCTGAACGAACAGATATTGCTCGCCTTCTGGATATGGATGGAATTATAGTCGAGAAGCAGCGAGACCTTGCCACATTGTTAGGTCTTGAAGCCCCACCCACACAAATCGGCCTGATTAATGACATGgtaaaagttggtaatgattgccttttgaaagaaggtctaagctgtagtat Alignment from Pairagon AATGTCTACTAGAGTCCTTTTGGCGACTCTTTCCATTCCTATTACTCCTGAGCGAACTGATATTGCTCGACTTTTGGATATGGATGGTATTATAGTTGAGAAGCAGCGACGCCTTGCCACATTGCTAGGTCTTCAAGCCCCACCCACACGAATCGGCCTAATTAATGATATG caggtgggggcctaattataagctgaactgtctgcatttcccatttcaagAATGTCTACTAGAGTTCTTCTGGCAACACTTTCCATTCCTGTAACCCCTGAACGAACAGATATTGCTCGCCTTCTGGATATGGATGGAATTATAGTCGAGAAGCAGCGAGACCTTGCCACATTGTTAGGTCTTGAAGCCCCACCCACACAAATCGGCCTGATTAATGACATGgtaaaagttggtaatgattgccttttgaaagaaggtctaagctgtagtat Alignment from Exonerate_protein2genome AATGTCTACTAGAGTCCTTTTGGCGACTCTTTCCATTCCTATTACTCCTGAGCGAACTGATATTGCTCGACTTTTGGATATGGATGGTATTATAGTTGAGAAGCAGCGACGCCTTGCCACATTGCTAGGTCTTCAAGCCCCACCCACACGAATCGGCCTAATTAATGATATG caggtgggggcctaattataagctgaactgtctgcatttcccatttcaagAATGTCTACTAGAGTTCTTCTGGCAACACTTTCCATTCCTGTAACCCCTGAACGAACAGATATTGCTCGCCTTCTGGATATGGATGGAATTATAGTCGAGAAGCAGCGAGACCTTGCCACATTGTTAGGTCTTGAAGCCCCACCCACACAAATCGGCCTGATTAATGACATGgtaaaagttggtaatgattgccttttgaaagaaggtctaagctgtagtat Alignment from Exonerate_coding2genome AATGTCTACTAGAGTCCTTTTGGCGACTCTTTCCATTCCTATTACTCCTGAGCGAACTGATATTGCTCGACTTTTGGATATGGATGGTATTATAGTTGAGAAGCAGCGACGCCTTGCCACATTGCTAGGTCTTCAAGCCCCACCCACACGAATCGGCCTAATTAATGATATG caggtgggggcctaattataagctgaactgtctgcatttcccatttcaagAATGTCTACTAGAGTTCTTCTGGCAACACTTTCCATTCCTGTAACCCCTGAACGAACAGATATTGCTCGCCTTCTGGATATGGATGGAATTATAGTCGAGAAGCAGCGAGACCTTGCCACATTGTTAGGTCTTGAAGCCCCACCCACACAAATCGGCCTGATTAATGACATGgtaaaagttggtaatgattgccttttgaaagaaggtctaagctgtagtat Alignment from GeneWise AATGTCTACTAGAGTCCTTTTGGCGACTCTTTCCATTCCTATTACTCCTGAGCGAACTGATATTGCTCGACTTTTGGATATGGATGGTATTATAGTTGAGAAGCAGCGACGCCTTGCCACATTGCTAGGTCTTCAAGCCCCACCCACACGAATCGGCCTAATTAATGATATG caggtgggggcctaattataagctgaactgtctgcatttcccatttcaagAATGTCTACTAGAGTTCTTCTGGCAACACTTTCCATTCCTGTAACCCCTGAACGAACAGATATTGCTCGCCTTCTGGATATGGATGGAATTATAGTCGAGAAGCAGCGAGACCTTGCCACATTGTTAGGTCTTGAAGCCCCACCCACACAAATCGGCCTGATTAATGACATGgtaaaagttggtaatgattgccttttgaaagaaggtctaagctgtagtat #### Eif3a_ID13327_3 --> 0 - 2 Original Alignment GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGag ccttacactaaagatctgggagtcattttatttttttccattccctccagGTAAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCTCAACAAATGGTGTTGGATATAGAAGATCTGGATAATATCCAGACTCCTGAGaggtgaatcttaataaggtcttgtctatcttcagacaaactgttacgattag Alignment from CESAR GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGag ccttacactaaagatctgggagtcattttatttttttccattccctccagGTAAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCTCAACAAATGGTGTTGGATATAGAAGATCTGGATAATATCCAGACTCCTGAGaggtgaatcttaataaggtcttgtctatcttcagacaaactgttacgattag Alignment from Spaln_aa2Genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ccttacactaaagatctgggagtcattttatttttttccattccctccagGTAAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCTCAACAAATGGTGTTGGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtgaatcttaataaggtcttgtctatcttcagacaaactgttacgattag Alignment from Spaln_nt2Genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ccttacactaaagatctgggagtcattttatttttttccattccctccagGTAAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCTCAACAAATGGTGTTGGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtgaatcttaataaggtcttgtctatcttcagacaaactgttacgattag Alignment from Pairagon GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ccttacactaaagatctgggagtcattttatttttttccattccctccagGTAAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCTCAACAAATGGTGTTGGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtgaatcttaataaggtcttgtctatcttcagacaaactgttacgattag Alignment from Exonerate_protein2genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ccttacactaaagatctgggagtcattttatttttttccattccctccagGTAAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCTCAACAAATGGTGTTGGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtgaatcttaataaggtcttgtctatcttcagacaaactgttacgattag Alignment from Exonerate_coding2genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ccttacactaaagatctgggagtcattttatttttttccattccctccagGTAAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCTCAACAAATGGTGTTGGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtgaatcttaataaggtcttgtctatcttcagacaaactgttacgattag Alignment from GeneWise GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ccttacactaaagatctgggagtcattttatttttttccattccctccagGTAAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCTCAACAAATGGTGTTGGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtgaatcttaataaggtcttgtctatcttcagacaaactgttacgattag #### Eif3a_ID13328_2 --> 2 - 0 Original Alignment aaTTTCTTGAGGTTGGCAAAAAGCAGCCTGCCCTGGATGTTCTTTATGATGTAATGAAAAGTAAGAAGCACAGAACATGGCAGAAGATACATGAGCCAATTATGCTGAAATACTTGGAACTGTGTGTGGATCTTCGTAAGAGCCACTTGGCTAAGGAAGGGTTATATCAATATAAGAACATATGCCAACAG atgtgtaaaatacagggctcaaaaacaatatgtgattatttccattttagaaTTTCTTGAGGTTGGCAAAAAACAGCCTGCTCTAGATGTTCTTTATGATGTAATGAAAAGCAAGAAGCACAGAACTTGGCAAAAGATACATGAGCCAGTTATGCTGAAATACTTGGAACTATGTGTGGACCTTCGGAAAAGCCACTTGGCCAAGGAAGGATTACACCAATATAAGAATATATGTCACCAGgtgagcatgtttccctactttttggattaataaaaggtaaattccatttc Alignment from CESAR aaTTTCTTGAGGTTGGCAAAAAGCAGCCTGCCCTGGATGTTCTTTATGATGTAATGAAAAGTAAGAAGCACAGAACATGGCAGAAGATACATGAGCCAATTATGCTGAAATACTTGGAACTGTGTGTGGATCTTCGTAAGAGCCACTTGGCTAAGGAAGGGTTATATCAATATAAGAACATATGCCAACAG atgtgtaaaatacagggctcaaaaacaatatgtgattatttccattttagaaTTTCTTGAGGTTGGCAAAAAACAGCCTGCTCTAGATGTTCTTTATGATGTAATGAAAAGCAAGAAGCACAGAACTTGGCAAAAGATACATGAGCCAGTTATGCTGAAATACTTGGAACTATGTGTGGACCTTCGGAAAAGCCACTTGGCCAAGGAAGGATTACACCAATATAAGAATATATGTCACCAGgtgagcatgtttccctactttttggattaataaaaggtaaattccatttc Alignment from Spaln_aa2Genome AATTTCTTGAGGTTGGCAAAAAGCAGCCTGCCCTGGATGTTCTTTATGATGTAATGAAAAGTAAGAAGCACAGAACATGGCAGAAGATACATGAGCCAATTATGCTGAAATACTTGGAACTGTGTGTGGATCTTCGTAAGAGCCACTTGGCTAAGGAAGGGTTATATCAATATAAGAACATATGCCAACAG atgtgtaaaatacagggctcaaaaacaatatgtgattatttccattttagAATTTCTTGAGGTTGGCAAAAAACAGCCTGCTCTAGATGTTCTTTATGATGTAATGAAAAGCAAGAAGCACAGAACTTGGCAAAAGATACATGAGCCAGTTATGCTGAAATACTTGGAACTATGTGTGGACCTTCGGAAAAGCCACTTGGCCAAGGAAGGATTACACCAATATAAGAATATATGTCACCAGgtgagcatgtttccctactttttggattaataaaaggtaaattccatttc Alignment from Spaln_nt2Genome AATTTCTTGAGGTTGGCAAAAAGCAGCCTGCCCTGGATGTTCTTTATGATGTAATGAAAAGTAAGAAGCACAGAACATGGCAGAAGATACATGAGCCAATTATGCTGAAATACTTGGAACTGTGTGTGGATCTTCGTAAGAGCCACTTGGCTAAGGAAGGGTTATATCAATATAAGAACATATGCCAACAG atgtgtaaaatacagggctcaaaaacaatatgtgattatttccattttagAATTTCTTGAGGTTGGCAAAAAACAGCCTGCTCTAGATGTTCTTTATGATGTAATGAAAAGCAAGAAGCACAGAACTTGGCAAAAGATACATGAGCCAGTTATGCTGAAATACTTGGAACTATGTGTGGACCTTCGGAAAAGCCACTTGGCCAAGGAAGGATTACACCAATATAAGAATATATGTCACCAGgtgagcatgtttccctactttttggattaataaaaggtaaattccatttc Alignment from Pairagon AATTTCTTGAGGTTGGCAAAAAGCAGCCTGCCCTGGATGTTCTTTATGATGTAATGAAAAGTAAGAAGCACAGAACATGGCAGAAGATACATGAGCCAATTATGCTGAAATACTTGGAACTGTGTGTGGATCTTCGTAAGAGCCACTTGGCTAAGGAAGGGTTATATCAATATAAGAACATATGCCAACAG atgtgtaaaatacagggctcaaaaacaatatgtgattatttccattttagAATTTCTTGAGGTTGGCAAAAAACAGCCTGCTCTAGATGTTCTTTATGATGTAATGAAAAGCAAGAAGCACAGAACTTGGCAAAAGATACATGAGCCAGTTATGCTGAAATACTTGGAACTATGTGTGGACCTTCGGAAAAGCCACTTGGCCAAGGAAGGATTACACCAATATAAGAATATATGTCACCAGgtgagcatgtttccctactttttggattaataaaaggtaaattccatttc Alignment from Exonerate_protein2genome AATTTCTTGAGGTTGGCAAAAAGCAGCCTGCCCTGGATGTTCTTTATGATGTAATGAAAAGTAAGAAGCACAGAACATGGCAGAAGATACATGAGCCAATTATGCTGAAATACTTGGAACTGTGTGTGGATCTTCGTAAGAGCCACTTGGCTAAGGAAGGGTTATATCAATATAAGAACATATGCCAACAG atgtgtaaaatacagggctcaaaaacaatatgtgattatttccattttagAATTTCTTGAGGTTGGCAAAAAACAGCCTGCTCTAGATGTTCTTTATGATGTAATGAAAAGCAAGAAGCACAGAACTTGGCAAAAGATACATGAGCCAGTTATGCTGAAATACTTGGAACTATGTGTGGACCTTCGGAAAAGCCACTTGGCCAAGGAAGGATTACACCAATATAAGAATATATGTCACCAGgtgagcatgtttccctactttttggattaataaaaggtaaattccatttc Alignment from Exonerate_coding2genome GAATTTCTTGAGGTTGGCAAAAAGCAGCCTGCCCTGGATGTTCTTTATGATGTAATGAAAAGTAAGAAGCACAGAACATGGCAGAAGATACATGAGCCAATTATGCTGAAATACTTGGAACTGTGTGTGGATCTTCGTAAGAGCCACTTGGCTAAGGAAGGGTTATATCAATATAAGAACATATGCCAACAG atgtgtaaaatacagggctcaaaaacaatatgtgattatttccattttaGAATTTCTTGAGGTTGGCAAAAAACAGCCTGCTCTAGATGTTCTTTATGATGTAATGAAAAGCAAGAAGCACAGAACTTGGCAAAAGATACATGAGCCAGTTATGCTGAAATACTTGGAACTATGTGTGGACCTTCGGAAAAGCCACTTGGCCAAGGAAGGATTACACCAATATAAGAATATATGTCACCAGgtgagcatgtttccctactttttggattaataaaaggtaaattccatttc Alignment from GeneWise CCGGCCTATTTCCAGAGGCCGGAAAATGCCCTCAAGCGCGCCAACGAATTTCTTGAGGTTGGCAAAAAGCAGCCTGCCCTGGATGTTCTTTATGATGTAATGAAAAGTAAGAAGCACAGAACATGGCAGAAGATACATGAGCCAATTATGCTGAAATACTTGGAACTGTGTGTGGATCTTCGTAAGAGCCACTTGGCTAAGGAAGGGTTATATCAATATAAGAACATATGCCAACAG tgta---AAATACAGGGCTCAAAAACAATATGTGATTATTTCCATTTTAGAATTTCTTGAGGTTGGCAAAAAACAGCCTGCTCTAGATGTTCTTTATGATGTAATGAAAAGCAAGAAGCACAGAACTTGGCAAAAGATACATGAGCCAGTTATGCTGAAATACTTGGAACTATGTGTGGACCTTCGGAAAAGCCACTTGGCCAAGGAAGGATTACACCAATATAAGAATATATGTCACCAGgtgagcatgtttccctactttttggattaataaaaggtaaattccatttc #### Eml3_ID2506_5 --> 1 - 1 Original Alignment cCGGGGGAACAAAGACCCTCTGTCCAGTCCTGGGGGTCCCGGATCTCGGAGGAGCAATTATAACTTAg tcatcgctggcagtggatacaagttgtatgcttttgatttccccctctagtCGTGGGAATAAAGACCCTCTGTCCAGTCCTGGGGGTCCTGGATCTCGGAGGAGCAATTATAATTTAggtgaggtaaggagaatggcattagcaatgactagtaacgcacagcaaaaa Alignment from CESAR cCGGGGGAACAAAGACCCTCTGTCCAGTCCTGGGGGTCCCGGATCTCGGAGGAGCAATTATAACTTAg tcatcgctggcagtggatacaagttgtatgcttttgatttccccctctagtCGTGGGAATAAAGACCCTCTGTCCAGTCCTGGGGGTCCTGGATCTCGGAGGAGCAATTATAATTTAggtgaggtaaggagaatggcattagcaatgactagtaacgcacagcaaaaa Alignment from Spaln_aa2Genome CCGGGGGAACAAAGACCCTCTGTCCAGTCCTGGGGGTCCCGGATCTCGGAGGAGCAATTATAACTTAG tcatcgctggcagtggatacaagttgtatgcttttgatttccccctctagTCGTGGGAATAAAGACCCTCTGTCCAGTCCTGGGGGTCCTGGATCTCGGAGGAGCAATTATAATTTAGgtgaggtaaggagaatggcattagcaatgactagtaacgcacagcaaaaa Alignment from Spaln_nt2Genome CCGGGGGAACAAAGACCCTCTGTCCAGTCCTGGGGGTCCCGGATCTCGGAGGAGCAATTATAACTTAG tcatcgctggcagtggatacaagttgtatgcttttgatttccccctctagTCGTGGGAATAAAGACCCTCTGTCCAGTCCTGGGGGTCCTGGATCTCGGAGGAGCAATTATAATTTAGgtgaggtaaggagaatggcattagcaatgactagtaacgcacagcaaaaa Alignment from Pairagon CCGGGGGAACAAAGACCCTCTGTCCAGTCCTGGGGGTCCCGGATCTCGGAGGAGCAATTATAACTTAG tcatcgctggcagtggatacaagttgtatgcttttgatttccccctctagTCGTGGGAATAAAGACCCTCTGTCCAGTCCTGGGGGTCCTGGATCTCGGAGGAGCAATTATAATTTAGgtgaggtaaggagaatggcattagcaatgactagtaacgcacagcaaaaa Alignment from Exonerate_protein2genome CCGGGGGAACAAAGACCCTCTGTCCAGTCCTGGGGGTCCCGGATCTCGGAGGAGCAATTATAACTTAG tcatcgctggcagtggatacaagttgtatgcttttgatttccccctctagTCGTGGGAATAAAGACCCTCTGTCCAGTCCTGGGGGTCCTGGATCTCGGAGGAGCAATTATAATTTAGgtgaggtaaggagaatggcattagcaatgactagtaacgcacagcaaaaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCGGGGGAACAAAGACCCTCTGTCCAGTCCTGGGGGTCCCGGATCTCGGAGGAGCAATTATAACTTAG tcatcgctggcagtggatacaagttgtatgcttttgatttccccctctagTCGTGGGAATAAAGACCCTCTGTCCAGTCCTGGGGGTCCTGGATCTCGGAGGAGCAATTATAATTTAGgtgaggtaaggagaatggcattagcaatgactagtaacgcacagcaaaaa #### Eml3_ID2507_6 --> 2 - 2 Original Alignment aaGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGgt gtgccaagtgctctcctaaaagaagggttgttgttgttgtttttttgtagaaGGGATCTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATTACAATGTACATTCCATCTGGGGTCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCGGAGACCCTGACCCTTGAATGGgtgtaagtggttgaaactgtcacacacaatagaaaggctggcatttttgcgg Alignment from CESAR aaGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGgt gtgccaagtgctctcctaaaagaagggttgttgttgttgtttttttgtagaaGGGATCTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATTACAATGTACATTCCATCTGGGGTCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCGGAGACCCTGACCCTTGAATGGgtgtaagtggttgaaactgtcacacacaatagaaaggctggcatttttgcgg Alignment from Spaln_aa2Genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT gtgccaagtgctctcctaaaagaagggttgttgttgttgtttttttgtagAAGGGATCTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATTACAATGTACATTCCATCTGGGGTCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCGGAGACCCTGACCCTTGAATGGGTgtaagtggttgaaactgtcacacacaatagaaaggctggcatttttgcgg Alignment from Spaln_nt2Genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT gtgccaagtgctctcctaaaagaagggttgttgttgttgtttttttgtagAAGGGATCTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATTACAATGTACATTCCATCTGGGGTCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCGGAGACCCTGACCCTTGAATGGGTgtaagtggttgaaactgtcacacacaatagaaaggctggcatttttgcgg Alignment from Pairagon AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT gtgccaagtgctctcctaaaagaagggttgttgttgttgtttttttgtagAAGGGATCTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATTACAATGTACATTCCATCTGGGGTCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCGGAGACCCTGACCCTTGAATGGGTgtaagtggttgaaactgtcacacacaatagaaaggctggcatttttgcgg Alignment from Exonerate_protein2genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT gtgccaagtgctctcctaaaagaagggttgttgttgttgtttttttgtagAAGGGATCTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATTACAATGTACATTCCATCTGGGGTCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCGGAGACCCTGACCCTTGAATGGGTgtaagtggttgaaactgtcacacacaatagaaaggctggcatttttgcgg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT gtgccaagtgctctcctaaaagaagggttgttgttgttgtttttttgtagAAGGGATCTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATTACAATGTACATTCCATCTGGGGTCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCGGAGACCCTGACCCTTGAATGGGTgtaagtggttgaaactgtcacacacaatagaaaggctggcatttttgcgg #### Eml3_ID2520_19 --> 0 - 1 Original Alignment GGGCACTCCAGTTTTATCACTCACCTTGACTGGTCCAAGGATGGGAATTTCATCATGTCCAATTCTGGGGATTATGAGATTCTTTACt gagaagaccattcactgtgaagaccatttgtctttactttgatttttcagGGACACTCCAGTTTTATTACCCGGCTTGACTGGTCCAAAGATGGAAATTTCATTATGTCTAACTCTGGGGAGTATGAGATTTTTTATtgtaagtgacaggaagttgagagccgtgttgttattcttatcttgtgcatc Alignment from CESAR GGGCACTCCAGTTTTATCACTCACCTTGACTGGTCCAAGGATGGGAATTTCATCATGTCCAATTCTGGGGATTATGAGATTCTTTACt gagaagaccattcactgtgaagaccatttgtctttactttgatttttcagGGACACTCCAGTTTTATTACCCGGCTTGACTGGTCCAAAGATGGAAATTTCATTATGTCTAACTCTGGGGAGTATGAGATTTTTTATtgtaagtgacaggaagttgagagccgtgttgttattcttatcttgtgcatc Alignment from Spaln_aa2Genome GGGCACTCCAGTTTTATCACTCACCTTGACTGGTCCAAGGATGGGAATTTCATCATGTCCAATTCTGGGGATTATGAGATTCTTTACT gagaagaccattcactgtgaagaccatttgtctttactttgatttttcagGGACACTCCAGTTTTATTACCCGGCTTGACTGGTCCAAAGATGGAAATTTCATTATGTCTAACTCTGGGGAGTATGAGATTTTTTATTgtaagtgacaggaagttgagagccgtgttgttattcttatcttgtgcatc Alignment from Spaln_nt2Genome GGGCACTCCAGTTTTATCACTCACCTTGACTGGTCCAAGGATGGGAATTTCATCATGTCCAATTCTGGGGATTATGAGATTCTTTACT gagaagaccattcactgtgaagaccatttgtctttactttgatttttcagGGACACTCCAGTTTTATTACCCGGCTTGACTGGTCCAAAGATGGAAATTTCATTATGTCTAACTCTGGGGAGTATGAGATTTTTTATTgtaagtgacaggaagttgagagccgtgttgttattcttatcttgtgcatc Alignment from Pairagon GGGCACTCCAGTTTTATCACTCACCTTGACTGGTCCAAGGATGGGAATTTCATCATGTCCAATTCTGGGGATTATGAGATTCTTTACT gagaagaccattcactgtgaagaccatttgtctttactttgatttttcagGGACACTCCAGTTTTATTACCCGGCTTGACTGGTCCAAAGATGGAAATTTCATTATGTCTAACTCTGGGGAGTATGAGATTTTTTATTgtaagtgacaggaagttgagagccgtgttgttattcttatcttgtgcatc Alignment from Exonerate_protein2genome GGGCACTCCAGTTTTATCACTCACCTTGACTGGTCCAAGGATGGGAATTTCATCATGTCCAATTCTGGGGATTATGAGATTCTTTACT gagaagaccattcactgtgaagaccatttgtctttactttgatttttcagGGACACTCCAGTTTTATTACCCGGCTTGACTGGTCCAAAGATGGAAATTTCATTATGTCTAACTCTGGGGAGTATGAGATTTTTTATTgtaagtgacaggaagttgagagccgtgttgttattcttatcttgtgcatc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGGCACTCCAGTTTTATCACTCACCTTGACTGGTCCAAGGATGGGAATTTCATCATGTCCAATTCTGGGGATTATGAGATTCTTTACT gagaagaccattcactgtgaagaccatttgtctttactttgatttttcagGGACACTCCAGTTTTATTACCCGGCTTGACTGGTCCAAAGATGGAAATTTCATTATGTCTAACTCTGGGGAGTATGAGATTTTTTATTgtaagtgacaggaagttgagagccgtgttgttattcttatcttgtgcatc #### Eno4_ID12829_2 --> 0 - 0 Original Alignment GCAAACTACTTTTCTAAACTTGCGAAGCCTCCCTCCATATGCAAAATAGTAGGGAAAACCATACTGGATGGCCTGGGACTTCCTACTCTACAGGTGGAAATCTCCTGCACCATTCAAAATTTCCCCAAG tcttctcctatgaaagggtgttgcctcacaactttccattattggaacagGCAAACTACTTTTCCAAACTCGCAAAGCCTCCCTCTGTATGTAAAATAGTGGAGAAGACCATACTT---GGCTTGGGACTGCCTACCTTACCGTTGCAAATCTCCTGCACAATTCAGAATTTCCCTAAGgtcagtcataggaggtagggcaatatggcttcttttcaatactgactgaa Alignment from CESAR GCAAACTACTTTTCTAAACTTGCGAAGCCTCCCTCCATATGCAAAATAGTAGGGAAAACCATACTGGATGGCCTGGGACTTCCTACTCTACAGGTGGAAATCTCCTGCACCATTCAAAATTTCCCCAAG tcttctcctatgaaagggtgttgcctcacaactttccattattggaacagGCAAACTACTTTTCCAAACTCGCAAAGCCTCCCTCTGTATGTAAAATAGTGGAGAAGACCATACTT---GGCTTGGGACTGCCTACCTTACCGTTGCAAATCTCCTGCACAATTCAGAATTTCCCTAAGgtcagtcataggaggtagggcaatatggcttcttttcaatactgactgaa Alignment from Spaln_aa2Genome GCAAACTACTTTTCTAAACTTGCGAAGCCTCCCTCCATATGCAAAATAGTAGGGAAAACCATACTGGATGGCCTGGGACTTCCTACTCTACAGGTGGAAATCTCCTGCACCATTCAAAATTTCCCCAAG tcttctcctatgaaagggtgttgcctcacaactttccattattggaacagGCAAACTACTTTTCCAAACTCGCAAAGCCTCCCTCTGTATGTAAAATAGTGGAGAAGACCATACTT---GGCTTGGGACTGCCTACCTTACCGTTGCAAATCTCCTGCACAATTCAGAATTTCCCTAAGgtcagtcataggaggtagggcaatatggcttcttttcaatactgactgaa Alignment from Spaln_nt2Genome GCAAACTACTTTTCTAAACTTGCGAAGCCTCCCTCCATATGCAAAATAGTAGGGAAAACCATACTGGATGGCCTGGGACTTCCTACTCTACAGGTGGAAATCTCCTGCACCATTCAAAATTTCCCCAAG tcttctcctatgaaagggtgttgcctcacaactttccattattggaacagGCAAACTACTTTTCCAAACTCGCAAAGCCTCCCTCTGTATGTAAAATAGTGGAGAAGACCATACTT---GGCTTGGGACTGCCTACCTTACCGTTGCAAATCTCCTGCACAATTCAGAATTTCCCTAAGgtcagtcataggaggtagggcaatatggcttcttttcaatactgactgaa Alignment from Pairagon GCAAACTACTTTTCTAAACTTGCGAAGCCTCCCTCCATATGCAAAATAGTAGGGAAAACCATACTGGATGGCCTGGGACTTCCTACTCTACAGGTGGAAATCTCCTGCACCATTCAAAATTTCCCCAAG tcttctcctatgaaagggtgttgcctcacaactttccattattggaacagGCAAACTACTTTTCCAAACTCGCAAAGCCTCCCTCTGTATGTAAAATAGTGGAGAAGACCATACT---TGGCTTGGGACTGCCTACCTTACCGTTGCAAATCTCCTGCACAATTCAGAATTTCCCTAAGgtcagtcataggaggtagggcaatatggcttcttttcaatactgactgaa Alignment from Exonerate_protein2genome tcttctcctatgaaagggtgttgcctcacaactttccattattggaacaggcaaactacttttccaaactcgcaaagcctccctctgtatgtaaaatagtggagaagaccatacttggcttgggactgcctaccttaccgttgcaaatctcctgcacaattcagaatttccctaaggtcagtcataggaggtagggcaatatggcttcttttcaatactgactgaa Alignment from Exonerate_coding2genome tcttctcctatgaaagggtgttgcctcacaactttccattattggaacaggcaaactacttttccaaactcgcaaagcctccctctgtatgtaaaatagtggagaagaccatacttggcttgggactgcctaccttaccgttgcaaatctcctgcacaattcagaatttccctaaggtcagtcataggaggtagggcaatatggcttcttttcaatactgactgaa Alignment from GeneWise GCAAACTACTTTTCTAAACTTGCGAAGCCTCCCTCCATATGCAAAATAGTAGGGAAAACCATACTGGATGGCCTGGGACTTCCTACTCTACAGGTGGAAATCTCCTGCACCATTCAAAATTTCCCCAAG tcttctcctatgaaagggtgttgcctcacaactttccattattggaacagGCAAACTACTTTTCCAAACTCGCAAAGCCTCCCTCTGTATGTAAAATAGTGGAGAAGACCATACTT---GGCTTGGGACTGCCTACCTTACCGTTGCAAATCTCCTGCACAATTCAGAATTTCCCTAAGgtcagtcataggaggtagggcaatatggcttcttttcaatactgactgaa #### Entpd1_ID8008_3 --> 0 - 1 Original Alignment TATGGGATTGTGTTGGATGCGGGGTCATCTCACACCAACCTGTACATCTACAAGTGGCCGGCCGAGAAGGAGAATGACACAGGGGTGGTGCAGCAGTTAGAGGAATGCCAAGTGAAAg gtccagaattggttagtggggtattactaccagttttccttttcattcagTATGGGATTGTGTTGGATGCAGGGTCTTCCCATACCAACTTGTATATCTACAAGTGGCCTGCTGAAAAGGAGAACGATACAGGGGTGGTGCAGCAGCTAGAGGAATGTCAAGTGAAAggtgagtcaaagaggggggatagcataggaggaaataacacagtatgacat Alignment from CESAR TATGGGATTGTGTTGGATGCGGGGTCATCTCACACCAACCTGTACATCTACAAGTGGCCGGCCGAGAAGGAGAATGACACAGGGGTGGTGCAGCAGTTAGAGGAATGCCAAGTGAAAg gtccagaattggttagtggggtattactaccagttttccttttcattcagTATGGGATTGTGTTGGATGCAGGGTCTTCCCATACCAACTTGTATATCTACAAGTGGCCTGCTGAAAAGGAGAACGATACAGGGGTGGTGCAGCAGCTAGAGGAATGTCAAGTGAAAggtgagtcaaagaggggggatagcataggaggaaataacacagtatgacat Alignment from Spaln_aa2Genome TATGGGATTGTGTTGGATGCGGGGTCATCTCACACCAACCTGTACATCTACAAGTGGCCGGCCGAGAAGGAGAATGACACAGGGGTGGTGCAGCAGTTAGAGGAATGCCAAGTGAAAG gtccagaattggttagtggggtattactaccagttttccttttcattcagTATGGGATTGTGTTGGATGCAGGGTCTTCCCATACCAACTTGTATATCTACAAGTGGCCTGCTGAAAAGGAGAACGATACAGGGGTGGTGCAGCAGCTAGAGGAATGTCAAGTGAAAGgtgagtcaaagaggggggatagcataggaggaaataacacagtatgacat Alignment from Spaln_nt2Genome TATGGGATTGTGTTGGATGCGGGGTCATCTCACACCAACCTGTACATCTACAAGTGGCCGGCCGAGAAGGAGAATGACACAGGGGTGGTGCAGCAGTTAGAGGAATGCCAAGTGAAAG gtccagaattggttagtggggtattactaccagttttccttttcattcagTATGGGATTGTGTTGGATGCAGGGTCTTCCCATACCAACTTGTATATCTACAAGTGGCCTGCTGAAAAGGAGAACGATACAGGGGTGGTGCAGCAGCTAGAGGAATGTCAAGTGAAAGgtgagtcaaagaggggggatagcataggaggaaataacacagtatgacat Alignment from Pairagon TATGGGATTGTGTTGGATGCGGGGTCATCTCACACCAACCTGTACATCTACAAGTGGCCGGCCGAGAAGGAGAATGACACAGGGGTGGTGCAGCAGTTAGAGGAATGCCAAGTGAAAG gtccagaattggttagtggggtattactaccagttttccttttcattcagTATGGGATTGTGTTGGATGCAGGGTCTTCCCATACCAACTTGTATATCTACAAGTGGCCTGCTGAAAAGGAGAACGATACAGGGGTGGTGCAGCAGCTAGAGGAATGTCAAGTGAAAGgtgagtcaaagaggggggatagcataggaggaaataacacagtatgacat Alignment from Exonerate_protein2genome TATGGGATTGTGTTGGATGCGGGGTCATCTCACACCAACCTGTACATCTACAAGTGGCCGGCCGAGAAGGAGAATGACACAGGGGTGGTGCAGCAGTTAGAGGAATGCCAAGTGAAAG gtccagaattggttagtggggtattactaccagttttccttttcattcagTATGGGATTGTGTTGGATGCAGGGTCTTCCCATACCAACTTGTATATCTACAAGTGGCCTGCTGAAAAGGAGAACGATACAGGGGTGGTGCAGCAGCTAGAGGAATGTCAAGTGAAAGgtgagtcaaagaggggggatagcataggaggaaataacacagtatgacat Alignment from Exonerate_coding2genome TATGGGATTGTGTTGGATGCGGGGTCATCTCACACCAACCTGTACATCTACAAGTGGCCGGCCGAGAAGGAGAATGACACAGGGGTGGTGCAGCAGTTAGAGGAATGCCAAGTGAAAG gtccagaattggttagtggggtattactaccagttttccttttcattcagTATGGGATTGTGTTGGATGCAGGGTCTTCCCATACCAACTTGTATATCTACAAGTGGCCTGCTGAAAAGGAGAACGATACAGGGGTGGTGCAGCAGCTAGAGGAATGTCAAGTGAAAGgtgagtcaaagaggggggatagcataggaggaaataacacagtatgacat Alignment from GeneWise TATGGGATTGTGTTGGATGCGGGGTCATCTCACACCAACCTGTACATCTACAAGTGGCCGGCCGAGAAGGAGAATGACACAGGGGTGGTGCAGCAGTTAGAGGAATGCCAAGTGAAAG gtccagaattggttagtggggtattactaccagttttccttttcattcagTATGGGATTGTGTTGGATGCAGGGTCTTCCCATACCAACTTGTATATCTACAAGTGGCCTGCTGAAAAGGAGAACGATACAGGGGTGGTGCAGCAGCTAGAGGAATGTCAAGTGAAAGgtgagtcaaagaggggggatagcataggaggaaataacacagtatgacat #### Entpd1_ID8012_7 --> 0 - 0 Original Alignment GTTTCAAGTGGTGGCGTCCTTAAGGACCCATGC---TTTAACCCAGGATACGAGAAGGTTGTGAATGTAAGTGAGCTCTATGGCACTCCCTGCACCAAAAGATTCGAAAAGAAGCTACCATTTGATCAGTTTCGAATCCAGGGCACTGGAGACTACGAACAGTGCCACCAGAGCATCCTTGAGCTCTTCAACAACAGCCACTGCCCTTACTCCCAGTGTGCCTTCAATGGCGTCTTCCTGCCACCTCTCCATGGGAGTTTTGGG gcaaagatctaaatatgaacactcagcatttttctctctctcatttcaagGTCTCTAGTGGGGGTGTCCTAAAGGATGCAAGCTGCTTCAATCCAGGATATAAGAAAGTTGTGAATGTAAGTGAGCTCTACGGGGCATCCTGCACAAAAAAT---GAGAAGAAACTATCATTTGATGCATTCAAAGTTCCAGCAGCTGGC---TATGAACCATGCTACCAGAGTATTCTGGAACTCTTCAACAACAGCCACTGTCCTTACTCGCAGTGTGCATGTAATGATGTTTTTCTCACACCTCTCTATGGGAGTATTGGAgtgagtgctcaatgtctcattcccatgatggcacaaacaatatccccaac Alignment from CESAR GTTTCAAGTGGTGGCGTCCTTAAGGACCCA---TGCTTTAACCCAGGATACGAGAAGGTTGTGAATGTAAGTGAGCTCTATGGCACTCCCTGCACCAAAAGATTCGAAAAGAAGCTACCATTTGATCAGTTTCGAATCCAGGGCACTGGAGACTACGAACAGTGCCACCAGAGCATCCTTGAGCTCTTCAACAACAGCCACTGCCCTTACTCCCAGTGTGCCTTCAATGGCGTCTTCCTGCCACCTCTCCATGGGAGTTTTGGG gcaaagatctaaatatgaacactcagcatttttctctctctcatttcaagGTCTCTAGTGGGGGTGTCCTAAAGGATGCAAGCTGCTTCAATCCAGGATATAAGAAAGTTGTGAATGTAAGTGAGCTCTACGGGGCATCCTGCACAAAAAAT---GAGAAGAAACTATCATTTGATGCATTCAAAGTTCCAGCAGCTGGC---TATGAACCATGCTACCAGAGTATTCTGGAACTCTTCAACAACAGCCACTGTCCTTACTCGCAGTGTGCATGTAATGATGTTTTTCTCACACCTCTCTATGGGAGTATTGGAgtgagtgctcaatgtctcattcccatgatggcacaaacaatatccccaac Alignment from Spaln_aa2Genome GTTTCAAGTGGTGGCGTCCTTAAGGAC---CCATGCTTTAACCCAGGATACGAGAAGGTTGTGAATGTAAGTGAGCTCTATGGCACTCCCTGCACCAAAAGATTCGAAAAGAAGCTACCATTTGATCAGTTTCGAATCCAGGGCACTGGAGACTACGAACAGTGCCACCAGAGCATCCTTGAGCTCTTCAACAACAGCCACTGCCCTTACTCCCAGTGTGCCTTCAATGGCGTCTTCCTGCCACCTCTCCATGGGAGTTTTGGG gcaaagatctaaatatgaacactcagcatttttctctctctcatttcaagGTCTCTAGTGGGGGTGTCCTAAAGGATGCAAGCTGCTTCAATCCAGGATATAAGAAAGTTGTGAATGTAAGTGAGCTCTACGGGGCATCCTGCACAAAAAAT---GAGAAGAAACTATCATTTGATGCATTCAAAGTTCCAGCAGCTGGC---TATGAACCATGCTACCAGAGTATTCTGGAACTCTTCAACAACAGCCACTGTCCTTACTCGCAGTGTGCATGTAATGATGTTTTTCTCACACCTCTCTATGGGAGTATTGGAgtgagtgctcaatgtctcattcccatgatggcacaaacaatatccccaac Alignment from Spaln_nt2Genome GTTTCAAGTGGTGGCGTCCTTAAGGACCCA---TGCTTTAACCCAGGATACGAGAAGGTTGTGAATGTAAGTGAGCTCTATGGCACTCCCTGCACCAAAAGATTCGAAAAGAAGCTACCATTTGATCAGTTTCGAATCCAGGGCACTGGAGACTACGAACAGTGCCACCAGAGCATCCTTGAGCTCTTCAACAACAGCCACTGCCCTTACTCCCAGTGTGCCTTCAATGGCGTCTTCCTGCCACCTCTCCATGGGAGTTTTGGG gcaaagatctaaatatgaacactcagcatttttctctctctcatttcaagGTCTCTAGTGGGGGTGTCCTAAAGGATGCAAGCTGCTTCAATCCAGGATATAAGAAAGTTGTGAATGTAAGTGAGCTCTACGGGGCATCCTGCA-CAAAAAAT--GAGAAGAAACTATCATTTGATGCATTCAAAGTTCCAGCAGCTGG---CTATGAACCATGCTACCAGAGTATTCTGGAACTCTTCAACAACAGCCACTGTCCTTACTCGCAGTGTGCATGTAATGATGTTTTTCTCACACCTCTCTATGGGAGTATTGGAgtgagtgctcaatgtctcattcccatgatggcacaaacaatatccccaac Alignment from Pairagon GTTTCAAGTGGTGGCGTCCTTAAGGACCCA---TGCTTTAACCCAGGATACGAGAAGGTTGTGAATGTAAGTGAGCTCTATGGCACTCCCTGCACCAAAAGATTCGAAAAGAAGCTACCATTTGAT----------------CAGTTTCGAATCCAGGGCACTGGAGACTACGAACAGTGCCACCAGAGCATCCTTGAGCTCTTCAACAACAGCCACTGCCCTTACTCCCAGTGTGCCTTCAATGGCGTCTTCCTGCCACCTCTCCATGGGAGTTTTGGG gcaaagatctaaatatgaacactcagcatttttctctctctcatttcaagGTCTCTAGTGGGGGTGTCCTAAAGGATGCAAGCTGCTTCAATCCAGGATATAAGAAAGTTGTGAATGTAAGTGAGCTCTACGGGGCATCCTGCACAAAAAA---TGAGAAGAAACTATCATTTGATGCATTCAAAGTTCCAGCAGCT-------------------GGCTATGAACCATGCTACCAGAGTATTCTGGAACTCTTCAACAACAGCCACTGTCCTTACTCGCAGTGTGCATGTAATGATGTTTTTCTCACACCTCTCTATGGGAGTATTGGAgtgagtgctcaatgtctcattcccatgatggcacaaacaatatccccaac Alignment from Exonerate_protein2genome GTTTCAAGTGGTGGCGTCCTTAAGGAC---CCATGCTTTAACCCAGGATACGAGAAGGTTGTGAATGTAAGTGAGCTCTATGGCACTCCCTGCACCAAAAGATTCGAAAAGAAGCTACCATTTGATCAGTTTCGAATCCAGGGCACTGGAGACTACGAACAGTGCCACCAGAGCATCCTTGAGCTCTTCAACAACAGCCACTGCCCTTACTCCCAGTGTGCCTTCAATGGCGTCTTCCTGCCACCTCTCCATGGGAGTTTTGGG gcaaagatctaaatatgaacactcagcatttttctctctctcatttcaagGTCTCTAGTGGGGGTGTCCTAAAGGATGCAAGCTGCTTCAATCCAGGATATAAGAAAGTTGTGAATGTAAGTGAGCTCTACGGGGCATCCTGCACAAAAAAT---GAGAAGAAACTATCATTTGATGCATTCAAAGTTCCAGCAGCTGGC---TATGAACCATGCTACCAGAGTATTCTGGAACTCTTCAACAACAGCCACTGTCCTTACTCGCAGTGTGCATGTAATGATGTTTTTCTCACACCTCTCTATGGGAGTATTGGAgtgagtgctcaatgtctcattcccatgatggcacaaacaatatccccaac Alignment from Exonerate_coding2genome GTTTCAAGTGGTGGCGTCCTTAAGGAC---CCATGCTTTAACCCAGGATACGAGAAGGTTGTGAATGTAAGTGAGCTCTATGGCACTCCCTGCACCAAAAGATTCGAAAAGAAGCTACCATTTGATCAGTTTCGAATCCAGGGCACTGGAGACTACGAACAGTGCCACCAGAGCATCCTTGAGCTCTTCAACAACAGCCACTGCCCTTACTCCCAGTGTGCCTTCAATGGCGTCTTCCTGCCACCTCTCCATGGGAGTTTTGGG gcaaagatctaaatatgaacactcagcatttttctctctctcatttcaagGTCTCTAGTGGGGGTGTCCTAAAGGATGCAAGCTGCTTCAATCCAGGATATAAGAAAGTTGTGAATGTAAGTGAGCTCTACGGGGCATCCTGCACAAAAAAT---GAGAAGAAACTATCATTTGATGCATTCAAAGTTCCAGCAGCTGGC---TATGAACCATGCTACCAGAGTATTCTGGAACTCTTCAACAACAGCCACTGTCCTTACTCGCAGTGTGCATGTAATGATGTTTTTCTCACACCTCTCTATGGGAGTATTGGAgtgagtgctcaatgtctcattcccatgatggcacaaacaatatccccaac Alignment from GeneWise GTTTCAAGTGGTGGCGTCCTTAAGGACCCA---TGCTTTAACCCAGGATACGAGAAGGTTGTGAATGTAAGTGAGCTCTATGGCACTCCCTGCACCAAAAGATTCGAAAAGAAGCTACCATTTGATCAGTTTCGAATCCAGGGCACTGGAGACTACGAACAGTGCCACCAGAGCATCCTTGAGCTCTTCAACAACAGCCACTGCCCTTACTCCCAGTGTGCCTTCAATGGCGTCTTCCTGCCACCTCTCCATGGGAGTTTTGGG gcaaagatctaaatatgaacactcagcatttttctctctctcatttcaagGTCTCTAGTGGGGGTGTCCTAAAGGATGCAAGCTGCTTCAATCCAGGATATAAGAAAGTTGTGAATGTAAGTGAGCTCTACGGGGCATCCTGCACAAAAAAT---GAGAAGAAACTATCATTTGATGCATTCAAAGTTCCAGCAGCTGGC---TATGAACCATGCTACCAGAGTATTCTGGAACTCTTCAACAACAGCCACTGTCCTTACTCGCAGTGTGCATGTAATGATGTTTTTCTCACACCTCTCTATGGGAGTATTGGAgtgagtgctcaatgtctcattcccatgatggcacaaacaatatccccaac #### Entpd7_ID8792_2 --> 1 - 2 Original Alignment gATCAGTTTTTCCTACCTCTGCCCAGCCTCCTGGTACTTCACTGTGCCCACAGTGAGCCCGTTTCTCCGTCAGCGGGTGGCATTCCTGGGACTCTTCTTTATACCCTGTGTCCTTTTACTTCTTTTAATCATGGATTTACGACACTGGGCCACTTCGTTACCACGGGACAGGCAGTATGAGag tcccatgatctaaaaggagtagcaacaaagccctcccccttctcttctaggATCAGTTTTTCCTACTTATGCCCAGCCTCCTGGTACTTCACTGTGCTCACTGTGAGCCCATTCCTCCATCAGCGAGTAGCATTCCTGGGACTTTTCTTTATACCCTGTGTCCTTTTACTTCTTTTAATCATGGATTTGCGACACTGGGCCACTTCATTACCCCGAGACCGGCAGTATGAGaggtaaggaaaccccactaatcaattgacccaactcagcactctatgttaga Alignment from CESAR gATCAGTTTTTCCTACCTCTGCCCAGCCTCCTGGTACTTCACTGTGCCCACAGTGAGCCCGTTTCTCCGTCAGCGGGTGGCATTCCTGGGACTCTTCTTTATACCCTGTGTCCTTTTACTTCTTTTAATCATGGATTTACGACACTGGGCCACTTCGTTACCACGGGACAGGCAGTATGAGag tcccatgatctaaaaggagtagcaacaaagccctcccccttctcttctaggATCAGTTTTTCCTACTTATGCCCAGCCTCCTGGTACTTCACTGTGCTCACTGTGAGCCCATTCCTCCATCAGCGAGTAGCATTCCTGGGACTTTTCTTTATACCCTGTGTCCTTTTACTTCTTTTAATCATGGATTTGCGACACTGGGCCACTTCATTACCCCGAGACCGGCAGTATGAGaggtaaggaaaccccactaatcaattgacccaactcagcactctatgttaga Alignment from Spaln_aa2Genome GATCAGTTTTTCCTACCTCTGCCCAGCCTCCTGGTACTTCACTGTGCCCACAGTGAGCCCGTTTCTCCGTCAGCGGGTGGCATTCCTGGGACTCTTCTTTATACCCTGTGTCCTTTTACTTCTTTTAATCATGGATTTACGACACTGGGCCACTTCGTTACCACGGGACAGGCAGTATGAGAG tcccatgatctaaaaggagtagcaacaaagccctcccccttctcttctagGATCAGTTTTTCCTACTTATGCCCAGCCTCCTGGTACTTCACTGTGCTCACTGTGAGCCCATTCCTCCATCAGCGAGTAGCATTCCTGGGACTTTTCTTTATACCCTGTGTCCTTTTACTTCTTTTAATCATGGATTTGCGACACTGGGCCACTTCATTACCCCGAGACCGGCAGTATGAGAGgtaaggaaaccccactaatcaattgacccaactcagcactctatgttaga Alignment from Spaln_nt2Genome GATCAGTTTTTCCTACCTCTGCCCAGCCTCCTGGTACTTCACTGTGCCCACAGTGAGCCCGTTTCTCCGTCAGCGGGTGGCATTCCTGGGACTCTTCTTTATACCCTGTGTCCTTTTACTTCTTTTAATCATGGATTTACGACACTGGGCCACTTCGTTACCACGGGACAGGCAGTATGAGAG tcccatgatctaaaaggagtagcaacaaagccctcccccttctcttctagGATCAGTTTTTCCTACTTATGCCCAGCCTCCTGGTACTTCACTGTGCTCACTGTGAGCCCATTCCTCCATCAGCGAGTAGCATTCCTGGGACTTTTCTTTATACCCTGTGTCCTTTTACTTCTTTTAATCATGGATTTGCGACACTGGGCCACTTCATTACCCCGAGACCGGCAGTATGAGAGgtaaggaaaccccactaatcaattgacccaactcagcactctatgttaga Alignment from Pairagon GCTAGGATCAGTTTTTCCTACCTCTGCCCAGCCTCCTGGTACTTCACTGTGCCCACAGTGAGCCCGTTTCTCCGTCAGCGGGTGGCATTCCTGGGACTCTTCTTTATACCCTGTGTCCTTTTACTTCTTTTAATCATGGATTTACGACACTGGGCCACTTCGTTACCACGGGACAGGCAGTATGAGAG tcccatgatctaaaaggagtagcaacaaagccctcccccttctctTCTAGGATCAGTTTTTCCTACTTATGCCCAGCCTCCTGGTACTTCACTGTGCTCACTGTGAGCCCATTCCTCCATCAGCGAGTAGCATTCCTGGGACTTTTCTTTATACCCTGTGTCCTTTTACTTCTTTTAATCATGGATTTGCGACACTGGGCCACTTCATTACCCCGAGACCGGCAGTATGAGAGgtaaggaaaccccactaatcaattgacccaactcagcactctatgttaga Alignment from Exonerate_protein2genome GCTAGGATCAGTTTTTCCTACCTCTGCCCAGCCTCCTGGTACTTCACTGTGCCCACAGTGAGCCCGTTTCTCCGTCAGCGGGTGGCATTCCTGGGACTCTTCTTTATACCCTGTGTCCTTTTACTTCTTTTAATCATGGATTTACGACACTGGGCCACTTCGTTACCACGGGACAGGCAGTATGAGAG tcccatgatctaaaaggagtagcaacaaagccctcccccttctctTCTAGGATCAGTTTTTCCTACTTATGCCCAGCCTCCTGGTACTTCACTGTGCTCACTGTGAGCCCATTCCTCCATCAGCGAGTAGCATTCCTGGGACTTTTCTTTATACCCTGTGTCCTTTTACTTCTTTTAATCATGGATTTGCGACACTGGGCCACTTCATTACCCCGAGACCGGCAGTATGAGAGgtaaggaaaccccactaatcaattgacccaactcagcactctatgttaga Alignment from Exonerate_coding2genome GCTAGGATCAGTTTTTCCTACCTCTGCCCAGCCTCCTGGTACTTCACTGTGCCCACAGTGAGCCCGTTTCTCCGTCAGCGGGTGGCATTCCTGGGACTCTTCTTTATACCCTGTGTCCTTTTACTTCTTTTAATCATGGATTTACGACACTGGGCCACTTCGTTACCACGGGACAGGCAGTATGAGAG tcccatgatctaaaaggagtagcaacaaagccctcccccttctctTCTAGGATCAGTTTTTCCTACTTATGCCCAGCCTCCTGGTACTTCACTGTGCTCACTGTGAGCCCATTCCTCCATCAGCGAGTAGCATTCCTGGGACTTTTCTTTATACCCTGTGTCCTTTTACTTCTTTTAATCATGGATTTGCGACACTGGGCCACTTCATTACCCCGAGACCGGCAGTATGAGAGgtaaggaaaccccactaatcaattgacccaactcagcactctatgttaga Alignment from GeneWise GCTAGGATCAGTTTTTCCTACCTCTGCCCAGCCTCCTGGTACTTCACTGTGCCCACAGTGAGCCCGTTTCTCCGTCAGCGGGTGGCATTCCTGGGACTCTTCTTTATACCCTGTGTCCTTTTACTTCTTTTAATCATGGATTTACGACACTGGGCCACTTCGTTACCACGGGACAGGCAGTATGAGAG tcccatgatctaaaaggagtagcaacaaagccctcccccttctctTCTAGGATCAGTTTTTCCTACTTATGCCCAGCCTCCTGGTACTTCACTGTGCTCACTGTGAGCCCATTCCTCCATCAGCGAGTAGCATTCCTGGGACTTTTCTTTATACCCTGTGTCCTTTTACTTCTTTTAATCATGGATTTGCGACACTGGGCCACTTCATTACCCCGAGACCGGCAGTATGAGAGgtaaggaaaccccactaatcaattgacccaactcagcactctatgttaga #### Entpd7_ID8796_5 --> 1 - 1 Original Alignment gCAACAGTTGGCTATCTTGGCAGATTTAGTGAAAGATTTGCCGTTGGAGTTTGACTTCCTCTTTTCACAGTCTCAGGCCGAAGTGATCTCTGGGAAACAGGAAg gatcatcacaaatttggcaattttgaccttctgaaatttctttcccaaaggCAACAGCTGGCTATTTTGGCTGATTTAGTTAAAGATTTACCATTAGAGTTTGACTTCCTCTTTTCACAGTCTCAGGCTGAAGTGATCTCTGGGAAACAGGAAggtaagggtcagggttggaagctctactgcagattccgctgcagacctggg Alignment from CESAR gCAACAGTTGGCTATCTTGGCAGATTTAGTGAAAGATTTGCCGTTGGAGTTTGACTTCCTCTTTTCACAGTCTCAGGCCGAAGTGATCTCTGGGAAACAGGAAg gatcatcacaaatttggcaattttgaccttctgaaatttctttcccaaaggCAACAGCTGGCTATTTTGGCTGATTTAGTTAAAGATTTACCATTAGAGTTTGACTTCCTCTTTTCACAGTCTCAGGCTGAAGTGATCTCTGGGAAACAGGAAggtaagggtcagggttggaagctctactgcagattccgctgcagacctggg Alignment from Spaln_aa2Genome GCAACAGTTGGCTATCTTGGCAGATTTAGTGAAAGATTTGCCGTTGGAGTTTGACTTCCTCTTTTCACAGTCTCAGGCCGAAGTGATCTCTGGGAAACAGGAAG gatcatcacaaatttggcaattttgaccttctgaaatttctttcccaaagGCAACAGCTGGCTATTTTGGCTGATTTAGTTAAAGATTTACCATTAGAGTTTGACTTCCTCTTTTCACAGTCTCAGGCTGAAGTGATCTCTGGGAAACAGGAAGgtaagggtcagggttggaagctctactgcagattccgctgcagacctggg Alignment from Spaln_nt2Genome GCAACAGTTGGCTATCTTGGCAGATTTAGTGAAAGATTTGCCGTTGGAGTTTGACTTCCTCTTTTCACAGTCTCAGGCCGAAGTGATCTCTGGGAAACAGGAAG gatcatcacaaatttggcaattttgaccttctgaaatttctttcccaaagGCAACAGCTGGCTATTTTGGCTGATTTAGTTAAAGATTTACCATTAGAGTTTGACTTCCTCTTTTCACAGTCTCAGGCTGAAGTGATCTCTGGGAAACAGGAAGgtaagggtcagggttggaagctctactgcagattccgctgcagacctggg Alignment from Pairagon GCAACAGTTGGCTATCTTGGCAGATTTAGTGAAAGATTTGCCGTTGGAGTTTGACTTCCTCTTTTCACAGTCTCAGGCCGAAGTGATCTCTGGGAAACAGGAAG gatcatcacaaatttggcaattttgaccttctgaaatttctttcccaaagGCAACAGCTGGCTATTTTGGCTGATTTAGTTAAAGATTTACCATTAGAGTTTGACTTCCTCTTTTCACAGTCTCAGGCTGAAGTGATCTCTGGGAAACAGGAAGgtaagggtcagggttggaagctctactgcagattccgctgcagacctggg Alignment from Exonerate_protein2genome GCAACAGTTGGCTATCTTGGCAGATTTAGTGAAAGATTTGCCGTTGGAGTTTGACTTCCTCTTTTCACAGTCTCAGGCCGAAGTGATCTCTGGGAAACAGGAAG gatcatcacaaatttggcaattttgaccttctgaaatttctttcccaaagGCAACAGCTGGCTATTTTGGCTGATTTAGTTAAAGATTTACCATTAGAGTTTGACTTCCTCTTTTCACAGTCTCAGGCTGAAGTGATCTCTGGGAAACAGGAAGgtaagggtcagggttggaagctctactgcagattccgctgcagacctggg Alignment from Exonerate_coding2genome GCAACAGTTGGCTATCTTGGCAGATTTAGTGAAAGATTTGCCGTTGGAGTTTGACTTCCTCTTTTCACAGTCTCAGGCCGAAGTGATCTCTGGGAAACAGGAAG gatcatcacaaatttggcaattttgaccttctgaaatttctttcccaaagGCAACAGCTGGCTATTTTGGCTGATTTAGTTAAAGATTTACCATTAGAGTTTGACTTCCTCTTTTCACAGTCTCAGGCTGAAGTGATCTCTGGGAAACAGGAAGgtaagggtcagggttggaagctctactgcagattccgctgcagacctggg Alignment from GeneWise GCAACAGTTGGCTATCTTGGCAGATTTAGTGAAAGATTTGCCGTTGGAGTTTGACTTCCTCTTTTCACAGTCTCAGGCCGAAGTGATCTCTGGGAAACAGGAAG gatcatcacaaatttggcaattttgaccttctgaaatttctttcccaaagGCAACAGCTGGCTATTTTGGCTGATTTAGTTAAAGATTTACCATTAGAGTTTGACTTCCTCTTTTCACAGTCTCAGGCTGAAGTGATCTCTGGGAAACAGGAAGgtaagggtcagggttggaagctctactgcagattccgctgcagacctggg #### Entpd7_ID8799_8 --> 0 - 2 Original Alignment GAAGAAGCTGCCAAGATCCTGCTGGCCGAGTTCAACCTGGGCTGTGACGTGCAGCACACGGAGCACGTGTACAGGGTTTATGTCACCACCTTCCTGGGCTTTGGGGGCAACTTTGCCCGGCAGCGCTATGAAGATCTCGTGCTGAATGAAACGCTTAACAAAAACag ttagcaagattctgattgttgattctttaatcaccatacctctatttcagGAAGAAGCAGCCAAGATTCTACTAGTGGAGTGCAACTTAGGCTGTGACATCCAGCACATGGAGCACATTTGCAGAGTCTATGTCACTACCTTCCTGGGCTTTGGTGGCAACTTTGCCCGACAGCGCTATGAAGATCTTGTGCTGAATGAAACGCTTAACAAGAACatgtacgtttttaccataccagatcaatcaagtaagaggcatgcaggcatgt Alignment from CESAR GAAGAAGCTGCCAAGATCCTGCTGGCCGAGTTCAACCTGGGCTGTGACGTGCAGCACACGGAGCACGTGTACAGGGTTTATGTCACCACCTTCCTGGGCTTTGGGGGCAACTTTGCCCGGCAGCGCTATGAAGATCTCGTGCTGAATGAAACGCTTAACAAAAACag ttagcaagattctgattgttgattctttaatcaccatacctctatttcagGAAGAAGCAGCCAAGATTCTACTAGTGGAGTGCAACTTAGGCTGTGACATCCAGCACATGGAGCACATTTGCAGAGTCTATGTCACTACCTTCCTGGGCTTTGGTGGCAACTTTGCCCGACAGCGCTATGAAGATCTTGTGCTGAATGAAACGCTTAACAAGAACatgtacgtttttaccataccagatcaatcaagtaagaggcatgcaggcatgt Alignment from Spaln_aa2Genome GAAGAAGCTGCCAAGATCCTGCTGGCCGAGTTCAACCTGGGCTGTGACGTGCAGCACACGGAGCACGTGTACAGGGTTTATGTCACCACCTTCCTGGGCTTTGGGGGCAACTTTGCCCGGCAGCGCTATGAAGATCTCGTGCTGAATGAAACGCTTAACAAAAACAG ttagcaagattctgattgttgattctttaatcaccatacctctatttcagGAAGAAGCAGCCAAGATTCTACTAGTGGAGTGCAACTTAGGCTGTGACATCCAGCACATGGAGCACATTTGCAGAGTCTATGTCACTACCTTCCTGGGCTTTGGTGGCAACTTTGCCCGACAGCGCTATGAAGATCTTGTGCTGAATGAAACGCTTAACAAGAACATgtacgtttttaccataccagatcaatcaagtaagaggcatgcaggcatgt Alignment from Spaln_nt2Genome GAAGAAGCTGCCAAGATCCTGCTGGCCGAGTTCAACCTGGGCTGTGACGTGCAGCACACGGAGCACGTGTACAGGGTTTATGTCACCACCTTCCTGGGCTTTGGGGGCAACTTTGCCCGGCAGCGCTATGAAGATCTCGTGCTGAATGAAACGCTTAACAAAAACAG ttagcaagattctgattgttgattctttaatcaccatacctctatttcagGAAGAAGCAGCCAAGATTCTACTAGTGGAGTGCAACTTAGGCTGTGACATCCAGCACATGGAGCACATTTGCAGAGTCTATGTCACTACCTTCCTGGGCTTTGGTGGCAACTTTGCCCGACAGCGCTATGAAGATCTTGTGCTGAATGAAACGCTTAACAAGAACATgtacgtttttaccataccagatcaatcaagtaagaggcatgcaggcatgt Alignment from Pairagon GAAGAAGCTGCCAAGATCCTGCTGGCCGAGTTCAACCTGGGCTGTGACGTGCAGCACACGGAGCACGTGTACAGGGTTTATGTCACCACCTTCCTGGGCTTTGGGGGCAACTTTGCCCGGCAGCGCTATGAAGATCTCGTGCTGAATGAAACGCTTAACAAAAACAG ttagcaagattctgattgttgattctttaatcaccatacctctatttcagGAAGAAGCAGCCAAGATTCTACTAGTGGAGTGCAACTTAGGCTGTGACATCCAGCACATGGAGCACATTTGCAGAGTCTATGTCACTACCTTCCTGGGCTTTGGTGGCAACTTTGCCCGACAGCGCTATGAAGATCTTGTGCTGAATGAAACGCTTAACAAGAACATgtacgtttttaccataccagatcaatcaagtaagaggcatgcaggcatgt Alignment from Exonerate_protein2genome GAAGAAGCTGCCAAGATCCTGCTGGCCGAGTTCAACCTGGGCTGTGACGTGCAGCACACGGAGCACGTGTACAGGGTTTATGTCACCACCTTCCTGGGCTTTGGGGGCAACTTTGCCCGGCAGCGCTATGAAGATCTCGTGCTGAATGAAACGCTTAACAAAAACAG ttagcaagattctgattgttgattctttaatcaccatacctctatttcagGAAGAAGCAGCCAAGATTCTACTAGTGGAGTGCAACTTAGGCTGTGACATCCAGCACATGGAGCACATTTGCAGAGTCTATGTCACTACCTTCCTGGGCTTTGGTGGCAACTTTGCCCGACAGCGCTATGAAGATCTTGTGCTGAATGAAACGCTTAACAAGAACATgtacgtttttaccataccagatcaatcaagtaagaggcatgcaggcatgt Alignment from Exonerate_coding2genome GAAGAAGCTGCCAAGATCCTGCTGGCCGAGTTCAACCTGGGCTGTGACGTGCAGCACACGGAGCACGTGTACAGGGTTTATGTCACCACCTTCCTGGGCTTTGGGGGCAACTTTGCCCGGCAGCGCTATGAAGATCTCGTGCTGAATGAAACGCTTAACAAAAACAG ttagcaagattctgattgttgattctttaatcaccatacctctatttcagGAAGAAGCAGCCAAGATTCTACTAGTGGAGTGCAACTTAGGCTGTGACATCCAGCACATGGAGCACATTTGCAGAGTCTATGTCACTACCTTCCTGGGCTTTGGTGGCAACTTTGCCCGACAGCGCTATGAAGATCTTGTGCTGAATGAAACGCTTAACAAGAACATgtacgtttttaccataccagatcaatcaagtaagaggcatgcaggcatgt Alignment from GeneWise GAAGAAGCTGCCAAGATCCTGCTGGCCGAGTTCAACCTGGGCTGTGACGTGCAGCACACGGAGCACGTGTACAGGGTTTATGTCACCACCTTCCTGGGCTTTGGGGGCAACTTTGCCCGGCAGCGCTATGAAGATCTCGTGCTGAATGAAACGCTTAACAAAAACAG ttagcaagattctgattgttgattctttaatcaccatacctctatttcagGAAGAAGCAGCCAAGATTCTACTAGTGGAGTGCAACTTAGGCTGTGACATCCAGCACATGGAGCACATTTGCAGAGTCTATGTCACTACCTTCCTGGGCTTTGGTGGCAACTTTGCCCGACAGCGCTATGAAGATCTTGTGCTGAATGAAACGCTTAACAAGAACATgtacgtttttaccataccagatcaatcaagtaagaggcatgcaggcatgt #### Erlin1_ID8894_10 --> 2 - 0 Original Alignment atGCTGCGTTCCTGGCCCGAGAGAAGGCAAAAGCAGATGCCGAGTATTACGCTGCACACAAATACGCCACCTCAAACAAG acattctgggacttttcattgcacacattttcttttgtggttcttaacagatGCCGCGTTCTTAGCCTGTGAGAAGTCAAAAGCTGATGCTGAATACTATGCTGCACACAAGTATTCAACATCAAATAAGgtaagggggtaccctcttccccattcattgccatctaacttgtgcatgca Alignment from CESAR atGCTGCGTTCCTGGCCCGAGAGAAGGCAAAAGCAGATGCCGAGTATTACGCTGCACACAAATACGCCACCTCAAACAAG acattctgggacttttcattgcacacattttcttttgtggttcttaacagatGCCGCGTTCTTAGCCTGTGAGAAGTCAAAAGCTGATGCTGAATACTATGCTGCACACAAGTATTCAACATCAAATAAGgtaagggggtaccctcttccccattcattgccatctaacttgtgcatgca Alignment from Spaln_aa2Genome ATGCTGCGTTCCTGGCCCGAGAGAAGGCAAAAGCAGATGCCGAGTATTACGCTGCACACAAATACGCCACCTCAAACAAG acattctgggacttttcattgcacacattttcttttgtggttcttaacagATGCCGCGTTCTTAGCCTGTGAGAAGTCAAAAGCTGATGCTGAATACTATGCTGCACACAAGTATTCAACATCAAATAAGgtaagggggtaccctcttccccattcattgccatctaacttgtgcatgca Alignment from Spaln_nt2Genome ATGCTGCGTTCCTGGCCCGAGAGAAGGCAAAAGCAGATGCCGAGTATTACGCTGCACACAAATACGCCACCTCAAACAAG acattctgggacttttcattgcacacattttcttttgtggttcttaacagATGCCGCGTTCTTAGCCTGTGAGAAGTCAAAAGCTGATGCTGAATACTATGCTGCACACAAGTATTCAACATCAAATAAGgtaagggggtaccctcttccccattcattgccatctaacttgtgcatgca Alignment from Pairagon ATGCTGCGTTCCTGGCCCGAGAGAAGGCAAAAGCAGATGCCGAGTATTACGCTGCACACAAATACGCCACCTCAAACAAG acattctgggacttttcattgcacacattttcttttgtggttcttaacagATGCCGCGTTCTTAGCCTGTGAGAAGTCAAAAGCTGATGCTGAATACTATGCTGCACACAAGTATTCAACATCAAATAAGgtaagggggtaccctcttccccattcattgccatctaacttgtgcatgca Alignment from Exonerate_protein2genome ATGCTGCGTTCCTGGCCCGAGAGAAGGCAAAAGCAGATGCCGAGTATTACGCTGCACACAAATACGCCACCTCAAACAAG acattctgggacttttcattgcacacattttcttttgtggttcttaacagATGCCGCGTTCTTAGCCTGTGAGAAGTCAAAAGCTGATGCTGAATACTATGCTGCACACAAGTATTCAACATCAAATAAGgtaagggggtaccctcttccccattcattgccatctaacttgtgcatgca Alignment from Exonerate_coding2genome ATGCTGCGTTCCTGGCCCGAGAGAAGGCAAAAGCAGATGCCGAGTATTACGCTGCACACAAATACGCCACCTCAAACAAG acattctgggacttttcattgcacacattttcttttgtggttcttaacagATGCCGCGTTCTTAGCCTGTGAGAAGTCAAAAGCTGATGCTGAATACTATGCTGCACACAAGTATTCAACATCAAATAAGgtaagggggtaccctcttccccattcattgccatctaacttgtgcatgca Alignment from GeneWise ATGCTGCGTTCCTGGCCCGAGAGAAGGCAAAAGCAGATGCCGAGTATTACGCTGCACACAAATACGCCACCTCAAACAAG acattctgggacttttcattgcacacattttcttttgtggttcttaacagATGCCGCGTTCTTAGCCTGTGAGAAGTCAAAAGCTGATGCTGAATACTATGCTGCACACAAGTATTCAACATCAAATAAGgtaagggggtaccctcttccccattcattgccatctaacttgtgcatgca #### Erlin1_ID8895_9 --> 2 - 1 Original Alignment aaGCAGAGAAGATTGCACAAGTAGCAAAAATTCGATTTCAACAGAAAGTGATGGAGAAAGAAACTGAAAAACGCATTTCTGAGATTGAAg gtggtgtagcgaatccctaaaatatgtttggcttttctctccgaccacagaaGCAGGAATGATTGCACAAGTAGCAAAAATTCGGTTCCAACAAAAAGTAATGGAGAAAGAGACTGAAAAACATATTTCTGAGATTGAAggtaagtcaatgacagtaaatcgtagttttctgtactagccctgcaggctt Alignment from CESAR aaGCAGAGAAGATTGCACAAGTAGCAAAAATTCGATTTCAACAGAAAGTGATGGAGAAAGAAACTGAAAAACGCATTTCTGAGATTGAAg gtggtgtagcgaatccctaaaatatgtttggcttttctctccgaccacagaaGCAGGAATGATTGCACAAGTAGCAAAAATTCGGTTCCAACAAAAAGTAATGGAGAAAGAGACTGAAAAACATATTTCTGAGATTGAAggtaagtcaatgacagtaaatcgtagttttctgtactagccctgcaggctt Alignment from Spaln_aa2Genome AAGCAGAGAAGATTGCACAAGTAGCAAAAATTCGATTTCAACAGAAAGTGATGGAGAAAGAAACTGAAAAACGCATTTCTGAGATTGAAG gtggtgtagcgaatccctaaaatatgtttggcttttctctccgaccacagAAGCAGGAATGATTGCACAAGTAGCAAAAATTCGGTTCCAACAAAAAGTAATGGAGAAAGAGACTGAAAAACATATTTCTGAGATTGAAGgtaagtcaatgacagtaaatcgtagttttctgtactagccctgcaggctt Alignment from Spaln_nt2Genome AAGCAGAGAAGATTGCACAAGTAGCAAAAATTCGATTTCAACAGAAAGTGATGGAGAAAGAAACTGAAAAACGCATTTCTGAGATTGAAG gtggtgtagcgaatccctaaaatatgtttggcttttctctccgaccacagAAGCAGGAATGATTGCACAAGTAGCAAAAATTCGGTTCCAACAAAAAGTAATGGAGAAAGAGACTGAAAAACATATTTCTGAGATTGAAGgtaagtcaatgacagtaaatcgtagttttctgtactagccctgcaggctt Alignment from Pairagon AAGCAGAGAAGATTGCACAAGTAGCAAAAATTCGATTTCAACAGAAAGTGATGGAGAAAGAAACTGAAAAACGCATTTCTGAGATTGAAG gtggtgtagcgaatccctaaaatatgtttggcttttctctccgaccacagAAGCAGGAATGATTGCACAAGTAGCAAAAATTCGGTTCCAACAAAAAGTAATGGAGAAAGAGACTGAAAAACATATTTCTGAGATTGAAGgtaagtcaatgacagtaaatcgtagttttctgtactagccctgcaggctt Alignment from Exonerate_protein2genome AAGCAGAGAAGATTGCACAAGTAGCAAAAATTCGATTTCAACAGAAAGTGATGGAGAAAGAAACTGAAAAACGCATTTCTGAGATTGAAG gtggtgtagcgaatccctaaaatatgtttggcttttctctccgaccacagAAGCAGGAATGATTGCACAAGTAGCAAAAATTCGGTTCCAACAAAAAGTAATGGAGAAAGAGACTGAAAAACATATTTCTGAGATTGAAGgtaagtcaatgacagtaaatcgtagttttctgtactagccctgcaggctt Alignment from Exonerate_coding2genome AAGCAGAGAAGATTGCACAAGTAGCAAAAATTCGATTTCAACAGAAAGTGATGGAGAAAGAAACTGAAAAACGCATTTCTGAGATTGAAG gtggtgtagcgaatccctaaaatatgtttggcttttctctccgaccacagAAGCAGGAATGATTGCACAAGTAGCAAAAATTCGGTTCCAACAAAAAGTAATGGAGAAAGAGACTGAAAAACATATTTCTGAGATTGAAGgtaagtcaatgacagtaaatcgtagttttctgtactagccctgcaggctt Alignment from GeneWise AAGCAGAGAAGATTGCACAAGTAGCAAAAATTCGATTTCAACAGAAAGTGATGGAGAAAGAAACTGAAAAACGCATTTCTGAGATTGAAG gtggtgtagcgaatccctaaaatatgtttggcttttctctccgaccacagAAGCAGGAATGATTGCACAAGTAGCAAAAATTCGGTTCCAACAAAAAGTAATGGAGAAAGAGACTGAAAAACATATTTCTGAGATTGAAGgtaagtcaatgacagtaaatcgtagttttctgtactagccctgcaggctt #### Erlin1_ID8896_8 --> 1 - 1 Original Alignment gGAGGCAGAGAAGACAAAACTTCTCATAGCTGCACAGAAACAAAAGGTGGTGGAGAAAGAAGCTGAGACGGAGAGGAAAAGGGCTGTTATAg atacatatatggttagagtcctctttggccggctgttccatctgccttaggGAGGCAGACAAGACCAAACTTCTCATAGCGTCACAAAAACAAAAAATAGTGGAGGAAGATGCTGAAACAGAGCGGAAAAGAGCAGTAATAagtatgggcttggaccccatgtgtaaagtagggaacaacatcttggccctt Alignment from CESAR gGAGGCAGAGAAGACAAAACTTCTCATAGCTGCACAGAAACAAAAGGTGGTGGAGAAAGAAGCTGAGACGGAGAGGAAAAGGGCTGTTATAg atacatatatggttagagtcctctttggccggctgttccatctgccttaggGAGGCAGACAAGACCAAACTTCTCATAGCGTCACAAAAACAAAAAATAGTGGAGGAAGATGCTGAAACAGAGCGGAAAAGAGCAGTAATAagtatgggcttggaccccatgtgtaaagtagggaacaacatcttggccctt Alignment from Spaln_aa2Genome GGAGGCAGAGAAGACAAAACTTCTCATAGCTGCACAGAAACAAAAGGTGGTGGAGAAAGAAGCTGAGACGGAGAGGAAAAGGGCTGTTATAG atacatatatggttagagtcctctttggccggctgttccatctgccttagGGAGGCAGACAAGACCAAACTTCTCATAGCGTCACAAAAACAAAAAATAGTGGAGGAAGATGCTGAAACAGAGCGGAAAAGAGCAGTAATAAgtatgggcttggaccccatgtgtaaagtagggaacaacatcttggccctt Alignment from Spaln_nt2Genome GGAGGCAGAGAAGACAAAACTTCTCATAGCTGCACAGAAACAAAAGGTGGTGGAGAAAGAAGCTGAGACGGAGAGGAAAAGGGCTGTTATAG atacatatatggttagagtcctctttggccggctgttccatctgccttagGGAGGCAGACAAGACCAAACTTCTCATAGCGTCACAAAAACAAAAAATAGTGGAGGAAGATGCTGAAACAGAGCGGAAAAGAGCAGTAATAAgtatgggcttggaccccatgtgtaaagtagggaacaacatcttggccctt Alignment from Pairagon GGAGGCAGAGAAGACAAAACTTCTCATAGCTGCACAGAAACAAAAGGTGGTGGAGAAAGAAGCTGAGACGGAGAGGAAAAGGGCTGTTATAG atacatatatggttagagtcctctttggccggctgttccatctgccttagGGAGGCAGACAAGACCAAACTTCTCATAGCGTCACAAAAACAAAAAATAGTGGAGGAAGATGCTGAAACAGAGCGGAAAAGAGCAGTAATAAgtatgggcttggaccccatgtgtaaagtagggaacaacatcttggccctt Alignment from Exonerate_protein2genome GGAGGCAGAGAAGACAAAACTTCTCATAGCTGCACAGAAACAAAAGGTGGTGGAGAAAGAAGCTGAGACGGAGAGGAAAAGGGCTGTTATAG atacatatatggttagagtcctctttggccggctgttccatctgccttagGGAGGCAGACAAGACCAAACTTCTCATAGCGTCACAAAAACAAAAAATAGTGGAGGAAGATGCTGAAACAGAGCGGAAAAGAGCAGTAATAAgtatgggcttggaccccatgtgtaaagtagggaacaacatcttggccctt Alignment from Exonerate_coding2genome GGAGGCAGAGAAGACAAAACTTCTCATAGCTGCACAGAAACAAAAGGTGGTGGAGAAAGAAGCTGAGACGGAGAGGAAAAGGGCTGTTATAG atacatatatggttagagtcctctttggccggctgttccatctgccttagGGAGGCAGACAAGACCAAACTTCTCATAGCGTCACAAAAACAAAAAATAGTGGAGGAAGATGCTGAAACAGAGCGGAAAAGAGCAGTAATAAgtatgggcttggaccccatgtgtaaagtagggaacaacatcttggccctt Alignment from GeneWise GGAGGCAGAGAAGACAAAACTTCTCATAGCTGCACAGAAACAAAAGGTGGTGGAGAAAGAAGCTGAGACGGAGAGGAAAAGGGCTGTTATAG atacatatatggttagagtcctctttggccggctgttccatctgccttagGGAGGCAGACAAGACCAAACTTCTCATAGCGTCACAAAAACAAAAAATAGTGGAGGAAGATGCTGAAACAGAGCGGAAAAGAGCAGTAATAAgtatgggcttggaccccatgtgtaaagtagggaacaacatcttggccctt #### Erlin1_ID8900_4 --> 1 - 1 Original Alignment tGGTGGAGTCATGATCTATATTGACCGAATAGAAGTGGTTAATATGTTGGCTCCTTATGCAg gcttattaccctattacaaaaggttttaccttctgtgattgttcctgcagtGGTGGAGTCATGATCTATATCGATCCTATACAAGTGGTTAATATGTTGGCCCCTTATGCTggtatcgagctttgtccctcatgagacaactattgcctgagggttagcagc Alignment from CESAR tGGTGGAGTCATGATCTATATTGACCGAATAGAAGTGGTTAATATGTTGGCTCCTTATGCAg gcttattaccctattacaaaaggttttaccttctgtgattgttcctgcagtGGTGGAGTCATGATCTATATCGATCCTATACAAGTGGTTAATATGTTGGCCCCTTATGCTggtatcgagctttgtccctcatgagacaactattgcctgagggttagcagc Alignment from Spaln_aa2Genome TGGTGGAGTCATGATCTATATTGACCGAATAGAAGTGGTTAATATGTTGGCTCCTTATGCAG gcttattaccctattacaaaaggttttaccttctgtgattgttcctgcagTGGTGGAGTCATGATCTATATCGATCCTATACAAGTGGTTAATATGTTGGCCCCTTATGCTGgtatcgagctttgtccctcatgagacaactattgcctgagggttagcagc Alignment from Spaln_nt2Genome TGGTGGAGTCATGATCTATATTGACCGAATAGAAGTGGTTAATATGTTGGCTCCTTATGCAG gcttattaccctattacaaaaggttttaccttctgtgattgttcctgcagTGGTGGAGTCATGATCTATATCGATCCTATACAAGTGGTTAATATGTTGGCCCCTTATGCTGgtatcgagctttgtccctcatgagacaactattgcctgagggttagcagc Alignment from Pairagon TGGTGGAGTCATGATCTATATTGACCGAATAGAAGTGGTTAATATGTTGGCTCCTTATGCAG gcttattaccctattacaaaaggttttaccttctgtgattgttcctgcagTGGTGGAGTCATGATCTATATCGATCCTATACAAGTGGTTAATATGTTGGCCCCTTATGCTGgtatcgagctttgtccctcatgagacaactattgcctgagggttagcagc Alignment from Exonerate_protein2genome TGGTGGAGTCATGATCTATATTGACCGAATAGAAGTGGTTAATATGTTGGCTCCTTATGCAG gcttattaccctattacaaaaggttttaccttctgtgattgttcctgcagTGGTGGAGTCATGATCTATATCGATCCTATACAAGTGGTTAATATGTTGGCCCCTTATGCTGgtatcgagctttgtccctcatgagacaactattgcctgagggttagcagc Alignment from Exonerate_coding2genome TGGTGGAGTCATGATCTATATTGACCGAATAGAAGTGGTTAATATGTTGGCTCCTTATGCAG gcttattaccctattacaaaaggttttaccttctgtgattgttcctgcagTGGTGGAGTCATGATCTATATCGATCCTATACAAGTGGTTAATATGTTGGCCCCTTATGCTGgtatcgagctttgtccctcatgagacaactattgcctgagggttagcagc Alignment from GeneWise TGGTGGAGTCATGATCTATATTGACCGAATAGAAGTGGTTAATATGTTGGCTCCTTATGCAG gcttattaccctattacaaaaggttttaccttctgtgattgttcctgcagTGGTGGAGTCATGATCTATATCGATCCTATACAAGTGGTTAATATGTTGGCCCCTTATGCTGgtatcgagctttgtccctcatgagacaactattgcctgagggttagcagc #### Ermp1_ID6319_11 --> 0 - 0 Original Alignment ATTACCTTCATCTACCTTGTGAACAGCACAAAGAAAACCATTCTGACTCTAATACTGGTGTGCGCGGTCACCTTCCTCCTTGTCTGCAGTGGAGCCTTTTTCCCATATAGTTCTAATCCCGAGAGTCCAAAGCCAAAGAGAGTGTTTCTTCAG taaagtacttatgactatgtgtttgattgtatttgtttgtcctctaacagATCACCTTCATTTATCTCATAAATAGTACAAAAAGGATAATACTGACACTAATATTGGTGTGCACAGTCACCCTCCAAATAGTCAGTAGTGGGTCCTTCTTTCCATATAGTTCTAATCCAGAGAGCCTGCGATCAAAACAAATCTTTCTTCAGgtaggagtgacaacaaggaaggaaatctcatatgtttaaggtgacagaaa Alignment from CESAR ATTACCTTCATCTACCTTGTGAACAGCACAAAGAAAACCATTCTGACTCTAATACTGGTGTGCGCGGTCACCTTCCTCCTTGTCTGCAGTGGAGCCTTTTTCCCATATAGTTCTAATCCCGAGAGTCCAAAGCCAAAGAGAGTGTTTCTTCAG taaagtacttatgactatgtgtttgattgtatttgtttgtcctctaacagATCACCTTCATTTATCTCATAAATAGTACAAAAAGGATAATACTGACACTAATATTGGTGTGCACAGTCACCCTCCAAATAGTCAGTAGTGGGTCCTTCTTTCCATATAGTTCTAATCCAGAGAGCCTGCGATCAAAACAAATCTTTCTTCAGgtaggagtgacaacaaggaaggaaatctcatatgtttaaggtgacagaaa Alignment from Spaln_aa2Genome ATTACCTTCATCTACCTTGTGAACAGCACAAAGAAAACCATTCTGACTCTAATACTGGTGTGCGCGGTCACCTTCCTCCTTGTCTGCAGTGGAGCCTTTTTCCCATATAGTTCTAATCCCGAGAGTCCAAAGCCAAAGAGAGTGTTTCTTCAG taaagtacttatgactatgtgtttgattgtatttgtttgtcctctaacagATCACCTTCATTTATCTCATAAATAGTACAAAAAGGATAATACTGACACTAATATTGGTGTGCACAGTCACCCTCCAAATAGTCAGTAGTGGGTCCTTCTTTCCATATAGTTCTAATCCAGAGAGCCTGCGATCAAAACAAATCTTTCTTCAGgtaggagtgacaacaaggaaggaaatctcatatgtttaaggtgacagaaa Alignment from Spaln_nt2Genome ATTACCTTCATCTACCTTGTGAACAGCACAAAGAAAACCATTCTGACTCTAATACTGGTGTGCGCGGTCACCTTCCTCCTTGTCTGCAGTGGAGCCTTTTTCCCATATAGTTCTAATCCCGAGAGTCCAAAGCCAAAGAGAGTGTTTCTTCAG taaagtacttatgactatgtgtttgattgtatttgtttgtcctctaacagATCACCTTCATTTATCTCATAAATAGTACAAAAAGGATAATACTGACACTAATATTGGTGTGCACAGTCACCCTCCAAATAGTCAGTAGTGGGTCCTTCTTTCCATATAGTTCTAATCCAGAGAGCCTGCGATCAAAACAAATCTTTCTTCAGgtaggagtgacaacaaggaaggaaatctcatatgtttaaggtgacagaaa Alignment from Pairagon ATTACCTTCATCTACCTTGTGAACAGCACAAAGAAAACCATTCTGACTCTAATACTGGTGTGCGCGGTCACCTTCCTCCTTGTCTGCAGTGGAGCCTTTTTCCCATATAGTTCTAATCCCGAGAGTC-----------CAAAGCCAAAGAGAGTGTTTCTTCAG taaagtacttatgactatgtgtttgattgtatttgtttgtcctctaacagATCACCTTCATTTATCTCATAAATAGTACAAAAAGGATAATACTGACACTAATATTGGTGTGCACAGTCACCCTCCAAATAGTCAGTAGTGGGTCCTTCTTTCCATATAGTTCTAATCCAGAGAGCCTGCGATCAAAACAAA-----------TCTTTCTTCAGgtaggagtgacaacaaggaaggaaatctcatatgtttaaggtgacagaaa Alignment from Exonerate_protein2genome ATTACCTTCATCTACCTTGTGAACAGCACAAAGAAAACCATTCTGACTCTAATACTGGTGTGCGCGGTCACCTTCCTCCTTGTCTGCAGTGGAGCCTTTTTCCCATATAGTTCTAATCCCGAGAGTCCAAAGCCAAAGAGAGTGTTTCTTCAG taaagtacttatgactatgtgtttgattgtatttgtttgtcctctaacagATCACCTTCATTTATCTCATAAATAGTACAAAAAGGATAATACTGACACTAATATTGGTGTGCACAGTCACCCTCCAAATAGTCAGTAGTGGGTCCTTCTTTCCATATAGTTCTAATCCAGAGAGCCTGCGATCAAAACAAATCTTTCTTCAGgtaggagtgacaacaaggaaggaaatctcatatgtttaaggtgacagaaa Alignment from Exonerate_coding2genome ATTACCTTCATCTACCTTGTGAACAGCACAAAGAAAACCATTCTGACTCTAATACTGGTGTGCGCGGTCACCTTCCTCCTTGTCTGCAGTGGAGCCTTTTTCCCATATAGTTCTAATCCCGAGAGTCCAAAGCCAAAGAGAGTGTTTCTTCAG taaagtacttatgactatgtgtttgattgtatttgtttgtcctctaacagATCACCTTCATTTATCTCATAAATAGTACAAAAAGGATAATACTGACACTAATATTGGTGTGCACAGTCACCCTCCAAATAGTCAGTAGTGGGTCCTTCTTTCCATATAGTTCTAATCCAGAGAGCCTGCGATCAAAACAAATCTTTCTTCAGgtaggagtgacaacaaggaaggaaatctcatatgtttaaggtgacagaaa Alignment from GeneWise ATTACCTTCATCTACCTTGTGAACAGCACAAAGAAAACCATTCTGACTCTAATACTGGTGTGCGCGGTCACCTTCCTCCTTGTCTGCAGTGGAGCCTTTTTCCCATATAGTTCTAATCCCGAGAGTCCAAAGCCAAAGAGAGTGTTTCTTCAG taaagtacttatgactatgtgtttgattgtatttgtttgtcctctaacagATCACCTTCATTTATCTCATAAATAGTACAAAAAGGATAATACTGACACTAATATTGGTGTGCACAGTCACCCTCCAAATAGTCAGTAGTGGGTCCTTCTTTCCATATAGTTCTAATCCAGAGAGCCTGCGATCAAAACAAATCTTTCTTCAGgtaggagtgacaacaaggaaggaaatctcatatgtttaaggtgacagaaa #### Ermp1_ID6323_7 --> 2 - 1 Original Alignment gtGACAACATTTTAGCAGTTCTTAAACACCTGGCTACGTCTGACACCCTGGCTTCTTCGTCTGAGTACCGGCATGGGAGCATGGTGTTCTTCGATGTGCTCGGCCTGCTGGTCATTGCGTACCCTTCTCGTGTCGGCTCCATAATCAACTACATGGTGGTCATGGCCGTGGTTCTGTACCTGGGGAAGAAACTTCTGCGGCCCAAGCACAGGa agtctggactggggtgactttataggaagacattgccttccactccgcaggaGATAATGTCTTGGCGGCACTTAAACAGCTC---ACATCTGACACCCAGGCTTCTCTGTTCGAGTAC------CAGAGTATGGTGTTCTTTGATGCACTTTGCCTCCTAGTCATTGCATACTCTTCTCGTGTCAGCCCCATAATCAATTACATGGTTGTCATGGCAGTGGTCTTGTACCTAGGAAAGGAACTCTTGCGGCCCAAGCATAGGagtgagtcttctctgctgcaatctgatttgaagcagagagggaaaggattt Alignment from CESAR gtGACAACATTTTAGCAGTTCTTAAACACCTGGCTACGTCTGACACCCTGGCTTCTTCGTCTGAGTACCGGCATGGGAGCATGGTGTTCTTCGATGTGCTCGGCCTGCTGGTCATTGCGTACCCTTCTCGTGTCGGCTCCATAATCAACTACATGGTGGTCATGGCCGTGGTTCTGTACCTGGGGAAGAAACTTCTGCGGCCCAAGCACAGGa agtctggactggggtgactttataggaagacattgccttccactccgcaggaGATAATGTCTTGGCGGCACTTAAACAGCTC---ACATCTGACACCCAGGCTTCTCTGTTCGAGTACCAG------AGTATGGTGTTCTTTGATGCACTTTGCCTCCTAGTCATTGCATACTCTTCTCGTGTCAGCCCCATAATCAATTACATGGTTGTCATGGCAGTGGTCTTGTACCTAGGAAAGGAACTCTTGCGGCCCAAGCATAGGagtgagtcttctctgctgcaatctgatttgaagcagagagggaaaggattt Alignment from Spaln_aa2Genome GTGACAACATTTTAGCAGTTCTTAAACACCTGGCTACGTCTGACACCCTGGCTTCTTCGTCTGAGTACCGGCATGGGAGCATGGTGTTCTTCGATGTGCTCGGCCTGCTGGTCATTGCGTACCCTTCTCGTGTCGGCTCCATAATCAACTACATGGTGGTCATGGCCGTGGTTCTGTACCTGGGGAAGAAACTTCTGCGGCCCAAGCACAGGA agtctggactggggtgactttataggaagacattgccttccactccgcagGAGATAATGTCTTGGCGGCACTTAAACAGCTC---ACATCTGACACCCAGGCTTCTCTGTTCGAGTACCAG------AGTATGGTGTTCTTTGATGCACTTTGCCTCCTAGTCATTGCATACTCTTCTCGTGTCAGCCCCATAATCAATTACATGGTTGTCATGGCAGTGGTCTTGTACCTAGGAAAGGAACTCTTGCGGCCCAAGCATAGGAgtgagtcttctctgctgcaatctgatttgaagcagagagggaaaggattt Alignment from Spaln_nt2Genome GTGACAACATTTTAGCAGTTCTTAAACACCTGGCTACGTCTGACACCCTGGCTTCTTCGTCTGAGTACCGGCATGGGAGCATGGTGTTCTTCGATGTGCTCGGCCTGCTGGTCATTGCGTACCCTTCTCGTGTCGGCTCCATAATCAACTACATGGTGGTCATGGCCGTGGTTCTGTACCTGGGGAAGAAACTTCTGCGGCCCAAGCACAGGA agtctggactggggtgactttataggaagacattgccttccactccgcagGAGATAATGTCTTGGCGGCACTTAAACAGCT---CACATCTGACACCCAGGCTTCTCTGTTCGAGTACC------AGAGTATGGTGTTCTTTGATGCACTTTGCCTCCTAGTCATTGCATACTCTTCTCGTGTCAGCCCCATAATCAATTACATGGTTGTCATGGCAGTGGTCTTGTACCTAGGAAAGGAACTCTTGCGGCCCAAGCATAGGAgtgagtcttctctgctgcaatctgatttgaagcagagagggaaaggattt Alignment from Pairagon GTGACAACATTTTAGCAGTTCTTAAACACCTGGCTACGTCTGACACCCTGGCTTCTTCGTCTGAGTACCGGCATGGGAGCATGGTGTTCTTCGATGTGCTCGGCCTGCTGGTCATTGCGTACCCTTCTCGTGTCGGCTCCATAATCAACTACATGGTGGTCATGGCCGTGGTTCTGTACCTGGGGAAGAAACTTCTGCGGCCCAAGCACAGGA agtctggactggggtgactttataggaagacattgccttccactccgcagGAGATAATGTCTTGGCGGCACTTAAACAGCT---CACATCTGACACCCAGGCTTCTCTGTTCGAGTACC------AGAGTATGGTGTTCTTTGATGCACTTTGCCTCCTAGTCATTGCATACTCTTCTCGTGTCAGCCCCATAATCAATTACATGGTTGTCATGGCAGTGGTCTTGTACCTAGGAAAGGAACTCTTGCGGCCCAAGCATAGGAgtgagtcttctctgctgcaatctgatttgaagcagagagggaaaggattt Alignment from Exonerate_protein2genome GTGACAACATTTTAGCAGTTCTTAAACACCTGGCTACGTCTGACACCCTGGCTTCTTCGTCTGAGTACCGGCATGGGAGCATGGTGTTCTTCGATGTGCTCGGCCTGCTGGTCATTGCGTACCCTTCTCGTGTCGGCTCCATAATCAACTACATGGTGGTCATGGCCGTGGTTCTGTACCTGGGGAAGAAACTTCTGCGGCCCAAGCACAGGA agtctggactggggtgactttataggaagacattgccttccactccgcagGAGATAATGTCTTGGCGGCACTTAAACAGCTC---ACATCTGACACCCAGGCTTCTCTGTTCGAGTACCAG------AGTATGGTGTTCTTTGATGCACTTTGCCTCCTAGTCATTGCATACTCTTCTCGTGTCAGCCCCATAATCAATTACATGGTTGTCATGGCAGTGGTCTTGTACCTAGGAAAGGAACTCTTGCGGCCCAAGCATAGGAgtgagtcttctctgctgcaatctgatttgaagcagagagggaaaggattt Alignment from Exonerate_coding2genome GTGACAACATTTTAGCAGTTCTTAAACACCTGGCTACGTCTGACACCCTGGCTTCTTCGTCTGAGTACCGGCATGGGAGCATGGTGTTCTTCGATGTGCTCGGCCTGCTGGTCATTGCGTACCCTTCTCGTGTCGGCTCCATAATCAACTACATGGTGGTCATGGCCGTGGTTCTGTACCTGGGGAAGAAACTTCTGCGGCCCAAGCACAGGA agtctggactggggtgactttataggaagacattgccttccactccgcagGAGATAATGTCTTGGCGGCACTTAAACAGCTC---ACATCTGACACCCAGGCTTCTCTGTTCGAGTACCAG------AGTATGGTGTTCTTTGATGCACTTTGCCTCCTAGTCATTGCATACTCTTCTCGTGTCAGCCCCATAATCAATTACATGGTTGTCATGGCAGTGGTCTTGTACCTAGGAAAGGAACTCTTGCGGCCCAAGCATAGGAgtgagtcttctctgctgcaatctgatttgaagcagagagggaaaggattt Alignment from GeneWise GTGACAACATTTTAGCAGTTCTTAAACACCTGGCTACGTCTGACACCCTGGCTTCTTCGTCTGAGTACCGGCATGGGAGCATGGTGTTCTTCGATGTGCTCGGCCTGCTGGTCATTGCGTACCCTTCTCGTGTCGGCTCCATAATCAACTACATGGTGGTCATGGCCGTGGTTCTGTACCTGGGGAAGAAACTTCTGCGGCCCAAGCACAGGA agtctggactggggtgactttataggaagacattgccttccactccgcagGAGATAATGTCTTGGCGGCACTTAAACAGCTC---ACATCTGACACCCAGGCTTCTCTGTTCGAGTACCAG------AGTATGGTGTTCTTTGATGCACTTTGCCTCCTAGTCATTGCATACTCTTCTCGTGTCAGCCCCATAATCAATTACATGGTTGTCATGGCAGTGGTCTTGTACCTAGGAAAGGAACTCTTGCGGCCCAAGCATAGGAgtgagtcttctctgctgcaatctgatttgaagcagagagggaaaggattt #### Exoc6_ID7362_2 --> 1 - 0 Original Alignment aTCTGTGTATGATGATCAGCCAAACGCACACAAGAAGTTTATGGAAAAGCTAGACGCTTGTATCCGCAATCATGACAAGGAAATTGAAAAAATGTGTAACTTCCATCACCAGGGCTTTGTGGATGCGATTACGGAACTCCTCAAAGTAAGGGCCGATGCGGAAAAACTGAAG acatcgaacataatcatctgcacatatactgttaacttgcttttcaacagaTCCGTGTATGATGATCCGCCAAACGCACACAAGAAATTTATGGAAAAGCTAGACGCATGTATCCGCAATCATGACAAAGAAATTGAAAAGATGTGCAACTTCCATCACCAGGGCTTTGTGGATGCAATTACAGAACTCCTCAAAGTAAGGGCCGATGCAGAAAAACTGAAGgtgagttccccccaggtaggcattaggtgctgtggatgaggcgggatgtt Alignment from CESAR aTCTGTGTATGATGATCAGCCAAACGCACACAAGAAGTTTATGGAAAAGCTAGACGCTTGTATCCGCAATCATGACAAGGAAATTGAAAAAATGTGTAACTTCCATCACCAGGGCTTTGTGGATGCGATTACGGAACTCCTCAAAGTAAGGGCCGATGCGGAAAAACTGAAG acatcgaacataatcatctgcacatatactgttaacttgcttttcaacagaTCCGTGTATGATGATCCGCCAAACGCACACAAGAAATTTATGGAAAAGCTAGACGCATGTATCCGCAATCATGACAAAGAAATTGAAAAGATGTGCAACTTCCATCACCAGGGCTTTGTGGATGCAATTACAGAACTCCTCAAAGTAAGGGCCGATGCAGAAAAACTGAAGgtgagttccccccaggtaggcattaggtgctgtggatgaggcgggatgtt Alignment from Spaln_aa2Genome ATCTGTGTATGATGATCAGCCAAACGCACACAAGAAGTTTATGGAAAAGCTAGACGCTTGTATCCGCAATCATGACAAGGAAATTGAAAAAATGTGTAACTTCCATCACCAGGGCTTTGTGGATGCGATTACGGAACTCCTCAAAGTAAGGGCCGATGCGGAAAAACTGAAG acatcgaacataatcatctgcacatatactgttaacttgcttttcaacagATCCGTGTATGATGATCCGCCAAACGCACACAAGAAATTTATGGAAAAGCTAGACGCATGTATCCGCAATCATGACAAAGAAATTGAAAAGATGTGCAACTTCCATCACCAGGGCTTTGTGGATGCAATTACAGAACTCCTCAAAGTAAGGGCCGATGCAGAAAAACTGAAGgtgagttccccccaggtaggcattaggtgctgtggatgaggcgggatgtt Alignment from Spaln_nt2Genome ATCTGTGTATGATGATCAGCCAAACGCACACAAGAAGTTTATGGAAAAGCTAGACGCTTGTATCCGCAATCATGACAAGGAAATTGAAAAAATGTGTAACTTCCATCACCAGGGCTTTGTGGATGCGATTACGGAACTCCTCAAAGTAAGGGCCGATGCGGAAAAACTGAAG acatcgaacataatcatctgcacatatactgttaacttgcttttcaacagATCCGTGTATGATGATCCGCCAAACGCACACAAGAAATTTATGGAAAAGCTAGACGCATGTATCCGCAATCATGACAAAGAAATTGAAAAGATGTGCAACTTCCATCACCAGGGCTTTGTGGATGCAATTACAGAACTCCTCAAAGTAAGGGCCGATGCAGAAAAACTGAAGgtgagttccccccaggtaggcattaggtgctgtggatgaggcgggatgtt Alignment from Pairagon ATCTGTGTATGATGATCAGCCAAACGCACACAAGAAGTTTATGGAAAAGCTAGACGCTTGTATCCGCAATCATGACAAGGAAATTGAAAAAATGTGTAACTTCCATCACCAGGGCTTTGTGGATGCGATTACGGAACTCCTCAAAGTAAGGGCCGATGCGGAAAAACTGAAG acatcgaacataatcatctgcacatatactgttaacttgcttttcaacagATCCGTGTATGATGATCCGCCAAACGCACACAAGAAATTTATGGAAAAGCTAGACGCATGTATCCGCAATCATGACAAAGAAATTGAAAAGATGTGCAACTTCCATCACCAGGGCTTTGTGGATGCAATTACAGAACTCCTCAAAGTAAGGGCCGATGCAGAAAAACTGAAGgtgagttccccccaggtaggcattaggtgctgtggatgaggcgggatgtt Alignment from Exonerate_protein2genome ATCTGTGTATGATGATCAGCCAAACGCACACAAGAAGTTTATGGAAAAGCTAGACGCTTGTATCCGCAATCATGACAAGGAAATTGAAAAAATGTGTAACTTCCATCACCAGGGCTTTGTGGATGCGATTACGGAACTCCTCAAAGTAAGGGCCGATGCGGAAAAACTGAAG acatcgaacataatcatctgcacatatactgttaacttgcttttcaacagATCCGTGTATGATGATCCGCCAAACGCACACAAGAAATTTATGGAAAAGCTAGACGCATGTATCCGCAATCATGACAAAGAAATTGAAAAGATGTGCAACTTCCATCACCAGGGCTTTGTGGATGCAATTACAGAACTCCTCAAAGTAAGGGCCGATGCAGAAAAACTGAAGgtgagttccccccaggtaggcattaggtgctgtggatgaggcgggatgtt Alignment from Exonerate_coding2genome CGATCTGTGTATGATGATCAGCCAAACGCACACAAGAAGTTTATGGAAAAGCTAGACGCTTGTATCCGCAATCATGACAAGGAAATTGAAAAAATGTGTAACTTCCATCACCAGGGCTTTGTGGATGCGATTACGGAACTCCTCAAAGTAAGGGCCGATGCGGAAAAACTGAAG acatcgaacataatcatctgcacatatactgttaacttgcttttcaacAGATCCGTGTATGATGATCCGCCAAACGCACACAAGAAATTTATGGAAAAGCTAGACGCATGTATCCGCAATCATGACAAAGAAATTGAAAAGATGTGCAACTTCCATCACCAGGGCTTTGTGGATGCAATTACAGAACTCCTCAAAGTAAGGGCCGATGCAGAAAAACTGAAGgtgagttccccccaggtaggcattaggtgctgtggatgaggcgggatgtt Alignment from GeneWise ATCTGTGTATGATGATCAGCCAAACGCACACAAGAAGTTTATGGAAAAGCTAGACGCTTGTATCCGCAATCATGACAAGGAAATTGAAAAAATGTGTAACTTCCATCACCAGGGCTTTGTGGATGCGATTACGGAACTCCTCAAAGTAAGGGCCGATGCGGAAAAACTGAAG acatcgaacataatcatctgcacatatactgttaacttgcttttcaacagATCCGTGTATGATGATCCGCCAAACGCACACAAGAAATTTATGGAAAAGCTAGACGCATGTATCCGCAATCATGACAAAGAAATTGAAAAGATGTGCAACTTCCATCACCAGGGCTTTGTGGATGCAATTACAGAACTCCTCAAAGTAAGGGCCGATGCAGAAAAACTGAAGgtgagttccccccaggtaggcattaggtgctgtggatgaggcgggatgtt #### Exoc6_ID7364_3 --> 0 - 0 Original Alignment GTGCAGGTTACCGATACCAACCGAAGGTTTCAAGATGCAGGAAAAGAG tgttacatcagagcaactccatatgtatgtttgtttttttgtcttttcagGTGAAATTTAATGATACCAAT---CGCTTTCAAGATGCTGGAAAAGAGgtaagtcaaatcagtgcatcccccattcatacccatgtccaacagttctc Alignment from CESAR GTGCAGGTTACCGATACCAACCGAAGGTTTCAAGATGCAGGAAAAGAG tgttacatcagagcaactccatatgtatgtttgtttttttgtcttttcagGTGAAATTTAATGATACCAATCGC---TTTCAAGATGCTGGAAAAGAGgtaagtcaaatcagtgcatcccccattcatacccatgtccaacagctccg Alignment from Spaln_aa2Genome GTGCAGGTTACCGATACCAACCGAAGGTTTCAAGATGCAGGAAAAGAG tgttacatcagagcaactccatatgtatgtttgtttttttgtcttttcagGTGAAATTTAATGATACCAAT---CGCTTTCAAGATGCTGGAAAAGAGgtaagtcaaatcagtgcatcccccattcatacccatgtccaacagttctc Alignment from Spaln_nt2Genome GTGCAGGTTACCGATACCAACCGAAGGTTTCAAGATGCAGGAAAAGAG tgttacatcagagcaactccatatgtatgtttgtttttttgtcttttcagGTGAAATTTAATGATACCAATC---GCTTTCAAGATGCTGGAAAAGAGgtaagtcaaatcagtgcatcccccattcatacccatgtccaacagttctc Alignment from Pairagon GTGCAGGTTACCGATACCAACCGAAGGTTTCAAGATGCAGGAAAAGAG tgttacatcagagcaactccatatgtatgtttgtttttttgtcttttcagGTGAAATTTAATGATACCAATCGC---TTTCAAGATGCTGGAAAAGAGgtaagtcaaatcagtgcatcccccattcatacccatgtccaacagttctc Alignment from Exonerate_protein2genome GTGCAGGTTACCGATACCAACCGAAGGTTTCAAGATGCAGGAAAAGAG tgttacatcagagcaactccatatgtatgtttgtttttttgtcttttcagGTGAAATTTAATGATACCAAT---CGCTTTCAAGATGCTGGAAAAGAGgtaagtcaaatcagtgcatcccccattcatacccatgtccaacagttctc Alignment from Exonerate_coding2genome GTGCAGGTTACCGATACCAACCGAAGGTTTCAAGATGCAGGAAAAGAG tgttacatcagagcaactccatatgtatgtttgtttttttgtcttttcagGTGAAATTTAATGATACCAAT---CGCTTTCAAGATGCTGGAAAAGAGgtaagtcaaatcagtgcatcccccattcatacccatgtccaacagttctc Alignment from GeneWise GTGCAGGTTACCGATACCAACCGAAGGTTTCAAGATGCAGGAAAAGAG tgttacatcagagcaactccatatgtatgtttgtttttttgtcttttcagGTGAAATTTAATGATACCAATCGC---TTTCAAGATGCTGGAAAAGAGgtaagtcaaatcagtgcatcccccattcatacccatgtccaacagttctc #### Exoc6_ID7366_5 --> 2 - 2 Original Alignment tgTTGGAGATGTACAGTAAGCTGAAGGAACAGATGAGCATGAAAag gtgtctgtccaagacgggtaccatgacttgcacattttgtttttctttagtgTTAGACATGTTTGGAAAGCTGAAGGAACAGATGAGCATGAAAaggtgatctcactctactggttccacaatggaatgaatctgcatacctgtct Alignment from CESAR tgTTGGAGATGTACAGTAAGCTGAAGGAACAGATGAGCATGAAAag gtgtctgtccaagacgggtaccatgacttgcacattttgtttttctttagtgTTAGACATGTTTGGAAAGCTGAAGGAACAGATGAGCATGAAAaggtgatctcactctactggttccacaatggaatgaatctgcatacctgtct Alignment from Spaln_aa2Genome TGTTGGAGATGTACAGTAAGCTGAAGGAACAGATGAGCATGAAAAG gtgtctgtccaagacgggtaccatgacttgcacattttgtttttctttagTGTTAGACATGTTTGGAAAGCTGAAGGAACAGATGAGCATGAAAAGgtgatctcactctactggttccacaatggaatgaatctgcatacctgtct Alignment from Spaln_nt2Genome TGTTGGAGATGTACAGTAAGCTGAAGGAACAGATGAGCATGAAAAG gtgtctgtccaagacgggtaccatgacttgcacattttgtttttctttagTGTTAGACATGTTTGGAAAGCTGAAGGAACAGATGAGCATGAAAAGgtgatctcactctactggttccacaatggaatgaatctgcatacctgtct Alignment from Pairagon TGTTGGAGATGTACAGTAAGCTGAAGGAACAGATGAGCATGAAAAG gtgtctgtccaagacgggtaccatgacttgcacattttgtttttctttagTGTTAGACATGTTTGGAAAGCTGAAGGAACAGATGAGCATGAAAAGgtgatctcactctactggttccacaatggaatgaatctgcatacctgtct Alignment from Exonerate_protein2genome TGTTGGAGATGTACAGTAAGCTGAAGGAACAGATGAGCATGAAAAG gtgtctgtccaagacgggtaccatgacttgcacattttgtttttctttagTGTTAGACATGTTTGGAAAGCTGAAGGAACAGATGAGCATGAAAAGgtgatctcactctactggttccacaatggaatgaatctgcatacctgtct Alignment from Exonerate_coding2genome TGTTGGAGATGTACAGTAAGCTGAAGGAACAGATGAGCATGAAAAG gtgtctgtccaagacgggtaccatgacttgcacattttgtttttctttagTGTTAGACATGTTTGGAAAGCTGAAGGAACAGATGAGCATGAAAAGgtgatctcactctactggttccacaatggaatgaatctgcatacctgtct Alignment from GeneWise TGTTGGAGATGTACAGTAAGCTGAAGGAACAGATGAGCATGAAAAG gtgtctgtccaagacgggtaccatgacttgcacattttgtttttctttagTGTTAGACATGTTTGGAAAGCTGAAGGAACAGATGAGCATGAAAAGgtgatctcactctactggttccacaatggaatgaatctgcatacctgtct #### Exoc6_ID7371_10 --> 0 - 2 Original Alignment CATGAAACAGTTGATGGCTATAGAAGATATTTCACTCAAATTGTAgg cctataactttcatattattaacattattttttgcttctctctgtcccagCGTGAAACAGTTGATGGCTATAGAAGATATTTCACTCAT---GTAgggtaagtaccaaatcgggatggggtgccaaggcattattattctagttgct Alignment from CESAR CATGAAACAGTTGATGGCTATAGAAGATATTTCACTCAAATTGTAgg cctataactttcatattattaacattattttttgcttctctctgtcccagCGTGAAACAGTTGATGGCTATAGAAGATATTTCACTCAT---GTAgggtaagtaccaaatcgggatggggtgccaaggcattattattctagttgct Alignment from Spaln_aa2Genome CATGAAACAGTTGATGGCTATAGAAGATATTTCACTCAAATTGTAGG cctataactttcatattattaacattattttttgcttctctctgtcccagCGTGAAACAGTTGATGGCTATAGAAGATATTTCACTCAT---GTAGGgtaagtaccaaatcgggatggggtgccaaggcattattattctagttgct Alignment from Spaln_nt2Genome CATGAAACAGTTGATGGCTATAGAAGATATTTCACTCAAATTGTAGG cctataactttcatattattaacattattttttgcttctctctgtcccagCGTGAAACAGTTGATGGCTATAGAAGATATTTCACTCA---TGTAGGgtaagtaccaaatcgggatggggtgccaaggcattattattctagttgct Alignment from Pairagon CATGAAACAGTTGATGGCTATAGAAGATATTTCACTCAAATTGTAGG cctataactttcatattattaacattattttttgcttctctctgtcccagCGTGAAACAGTTGATGGCTATAGAAGATATTTCACTCA---TGTAGGgtaagtaccaaatcgggatggggtgccaaggcattattattctagttgct Alignment from Exonerate_protein2genome CATGAAACAGTTGATGGCTATAGAAGATATTTCACTCAAATTGTAGG cctataactttcatattattaacattattttttgcttctctctgtcccagCGTGAAACAGTTGATGGCTATAGAAGATATTTCACTCAT---GTAGGgtaagtaccaaatcgggatggggtgccaaggcattattattctagttgct Alignment from Exonerate_coding2genome CATGAAACAGTTGATGGCTATAGAAGATATTTCACTCAAATTGTAGG cctataactttcatattattaacattattttttgcttctctctgtcccagCGTGAAACAGTTGATGGCTATAGAAGATATTTCACTCAT---GTAGGgtaagtaccaaatcgggatggggtgccaaggcattattattctagttgct Alignment from GeneWise CATGAAACAGTTGATGGCTATAGAAGATATTTCACTCAAATTGTAGG cctataactttcatattattaacattattttttgcttctctctgtcccagCGTGAAACAGTTGATGGCTATAGAAGATATTTCACTCAT---GTAGGgtaagtaccaaatcgggatggggtgccaaggcattattattctagttgct #### Exoc6_ID7372_11 --> 1 - 0 Original Alignment gTTCTTTGTTGTGGAAGATCACATTTTACACGTGACCCAAGGATTAGTAACCAGGGTCTACACTGAGGAACTCTGGAACATGGCCCTCTCAAAGATAATTGCTGTCCTCAGAGCTCACTCA tcctaagggtatgctgactccgtctttgtcctcccatatttccctgctaggTTCTTTGTAGTGGAAGATCACATTTTACATGTGACTCAAGGCTTGGTAACCAGTGTTTACACTGAGGAACTGTGGAACATGGCCCTGTCAAAGATAATAGCTATTCTCAGAGCTCACTCAgtaggacagaccagacatgttgcaaatgctcgctctctttttgggaaaat Alignment from CESAR gTTCTTTGTTGTGGAAGATCACATTTTACACGTGACCCAAGGATTAGTAACCAGGGTCTACACTGAGGAACTCTGGAACATGGCCCTCTCAAAGATAATTGCTGTCCTCAGAGCTCACTCA tcctaagggtatgctgactccgtctttgtcctcccatatttccctgctaggTTCTTTGTAGTGGAAGATCACATTTTACATGTGACTCAAGGCTTGGTAACCAGTGTTTACACTGAGGAACTGTGGAACATGGCCCTGTCAAAGATAATAGCTATTCTCAGAGCTCACTCAgtaggacagaccagacatgttgcaaatgctcgctctctttttgggaaaat Alignment from Spaln_aa2Genome GTTCTTTGTTGTGGAAGATCACATTTTACACGTGACCCAAGGATTAGTAACCAGGGTCTACACTGAGGAACTCTGGAACATGGCCCTCTCAAAGATAATTGCTGTCCTCAGAGCTCACTCA tcctaagggtatgctgactccgtctttgtcctcccatatttccctgctagGTTCTTTGTAGTGGAAGATCACATTTTACATGTGACTCAAGGCTTGGTAACCAGTGTTTACACTGAGGAACTGTGGAACATGGCCCTGTCAAAGATAATAGCTATTCTCAGAGCTCACTCAgtaggacagaccagacatgttgcaaatgctcgctctctttttgggaaaat Alignment from Spaln_nt2Genome GTTCTTTGTTGTGGAAGATCACATTTTACACGTGACCCAAGGATTAGTAACCAGGGTCTACACTGAGGAACTCTGGAACATGGCCCTCTCAAAGATAATTGCTGTCCTCAGAGCTCACTCA tcctaagggtatgctgactccgtctttgtcctcccatatttccctgctagGTTCTTTGTAGTGGAAGATCACATTTTACATGTGACTCAAGGCTTGGTAACCAGTGTTTACACTGAGGAACTGTGGAACATGGCCCTGTCAAAGATAATAGCTATTCTCAGAGCTCACTCAgtaggacagaccagacatgttgcaaatgctcgctctctttttgggaaaat Alignment from Pairagon GTTCTTTGTTGTGGAAGATCACATTTTACACGTGACCCAAGGATTAGTAACCAGGGTCTACACTGAGGAACTCTGGAACATGGCCCTCTCAAAGATAATTGCTGTCCTCAGAGCTCACTCA tcctaagggtatgctgactccgtctttgtcctcccatatttccctgctagGTTCTTTGTAGTGGAAGATCACATTTTACATGTGACTCAAGGCTTGGTAACCAGTGTTTACACTGAGGAACTGTGGAACATGGCCCTGTCAAAGATAATAGCTATTCTCAGAGCTCACTCAgtaggacagaccagacatgttgcaaatgctcgctctctttttgggaaaat Alignment from Exonerate_protein2genome GTTCTTTGTTGTGGAAGATCACATTTTACACGTGACCCAAGGATTAGTAACCAGGGTCTACACTGAGGAACTCTGGAACATGGCCCTCTCAAAGATAATTGCTGTCCTCAGAGCTCACTCA tcctaagggtatgctgactccgtctttgtcctcccatatttccctgctagGTTCTTTGTAGTGGAAGATCACATTTTACATGTGACTCAAGGCTTGGTAACCAGTGTTTACACTGAGGAACTGTGGAACATGGCCCTGTCAAAGATAATAGCTATTCTCAGAGCTCACTCAgtaggacagaccagacatgttgcaaatgctcgctctctttttgggaaaat Alignment from Exonerate_coding2genome GTTCTTTGTTGTGGAAGATCACATTTTACACGTGACCCAAGGATTAGTAACCAGGGTCTACACTGAGGAACTCTGGAACATGGCCCTCTCAAAGATAATTGCTGTCCTCAGAGCTCACTCA tcctaagggtatgctgactccgtctttgtcctcccatatttccctgctagGTTCTTTGTAGTGGAAGATCACATTTTACATGTGACTCAAGGCTTGGTAACCAGTGTTTACACTGAGGAACTGTGGAACATGGCCCTGTCAAAGATAATAGCTATTCTCAGAGCTCACTCAgtaggacagaccagacatgttgcaaatgctcgctctctttttgggaaaat Alignment from GeneWise GTTCTTTGTTGTGGAAGATCACATTTTACACGTGACCCAAGGATTAGTAACCAGGGTCTACACTGAGGAACTCTGGAACATGGCCCTCTCAAAGATAATTGCTGTCCTCAGAGCTCACTCA tcctaagggtatgctgactccgtctttgtcctcccatatttccctgctagGTTCTTTGTAGTGGAAGATCACATTTTACATGTGACTCAAGGCTTGGTAACCAGTGTTTACACTGAGGAACTGTGGAACATGGCCCTGTCAAAGATAATAGCTATTCTCAGAGCTCACTCAgtaggacagaccagacatgttgcaaatgctcgctctctttttgggaaaat #### Exoc6_ID7379_16 --> 1 - 0 Original Alignment cTCAACAGAAATAGATGACATGCTTAGGAAATCAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTACTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAG ttgactccctgctattgttggatttcagcccacccctcttccaattgcagcTCAACAGAAATAGATGACATGCTTAGGAAATTAACCAATCTGCTGTTAACCAGAATTCTGAGTAGCTGTTTATTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAGgtgagaaggaaatactattttacttcaaaagttttgggcaacatgagata Alignment from CESAR cTCAACAGAAATAGATGACATGCTTAGGAAATCAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTACTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAG ttgactccctgctattgttggatttcagcccacccctcttccaattgcagcTCAACAGAAATAGATGACATGCTTAGGAAATTAACCAATCTGCTGTTAACCAGAATTCTGAGTAGCTGTTTATTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAGgtgagaaggaaatactattttacttcaaaagttttgggcaacatgagata Alignment from Spaln_aa2Genome CTCAACAGAAATAGATGACATGCTTAGGAAATCAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTACTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAG ttgactccctgctattgttggatttcagcccacccctcttccaattgcagCTCAACAGAAATAGATGACATGCTTAGGAAATTAACCAATCTGCTGTTAACCAGAATTCTGAGTAGCTGTTTATTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAGgtgagaaggaaatactattttacttcaaaagttttgggcaacatgagata Alignment from Spaln_nt2Genome CTCAACAGAAATAGATGACATGCTTAGGAAATCAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTACTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAG ttgactccctgctattgttggatttcagcccacccctcttccaattgcagCTCAACAGAAATAGATGACATGCTTAGGAAATTAACCAATCTGCTGTTAACCAGAATTCTGAGTAGCTGTTTATTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAGgtgagaaggaaatactattttacttcaaaagttttgggcaacatgagata Alignment from Pairagon CTCAACAGAAATAGATGACATGCTTAGGAAATCAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTACTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAG ttgactccctgctattgttggatttcagcccacccctcttccaattgcagCTCAACAGAAATAGATGACATGCTTAGGAAATTAACCAATCTGCTGTTAACCAGAATTCTGAGTAGCTGTTTATTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAGgtgagaaggaaatactattttacttcaaaagttttgggcaacatgagata Alignment from Exonerate_protein2genome CTCAACAGAAATAGATGACATGCTTAGGAAATCAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTACTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAG ttgactccctgctattgttggatttcagcccacccctcttccaattgcagCTCAACAGAAATAGATGACATGCTTAGGAAATTAACCAATCTGCTGTTAACCAGAATTCTGAGTAGCTGTTTATTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAGgtgagaaggaaatactattttacttcaaaagttttgggcaacatgagata Alignment from Exonerate_coding2genome CTCAACAGAAATAGATGACATGCTTAGGAAATCAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTACTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAG ttgactccctgctattgttggatttcagcccacccctcttccaattgcagCTCAACAGAAATAGATGACATGCTTAGGAAATTAACCAATCTGCTGTTAACCAGAATTCTGAGTAGCTGTTTATTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAGgtgagaaggaaatactattttacttcaaaagttttgggcaacatgagata Alignment from GeneWise CTCAACAGAAATAGATGACATGCTTAGGAAATCAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTACTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAG ttgactccctgctattgttggatttcagcccacccctcttccaattgcagCTCAACAGAAATAGATGACATGCTTAGGAAATTAACCAATCTGCTGTTAACCAGAATTCTGAGTAGCTGTTTATTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAGgtgagaaggaaatactattttacttcaaaagttttgggcaacatgagata #### Exoc6_ID7390_20 --> 2 - 0 Original Alignment tgTTTGCCAGCTCTGAGCCTGTGCCAGGATTCCAAGGGGACACCCTGCAGCTGGCCTTCATTGACCTCAGACAG ttaaacattacaatatgttatatgaggacatcttcttcttttgttgatagtgTTCGCCAGCTCTGAGCCTGTGCCAGGTTTCCAAGGGGACACCCTACAGCTTGCCTTTATTGACCTCAGGCAGgtaaagaattgataagaataccctttaccatcaatgtctttagtgacctc Alignment from CESAR tgTTTGCCAGCTCTGAGCCTGTGCCAGGATTCCAAGGGGACACCCTGCAGCTGGCCTTCATTGACCTCAGACAG ttaaacattacaatatgttatatgaggacatcttcttcttttgttgatagtgTTCGCCAGCTCTGAGCCTGTGCCAGGTTTCCAAGGGGACACCCTACAGCTTGCCTTTATTGACCTCAGGCAGgtaaagaattgataagaataccctttaccatcaatgtctttagtgacctc Alignment from Spaln_aa2Genome TGTTTGCCAGCTCTGAGCCTGTGCCAGGATTCCAAGGGGACACCCTGCAGCTGGCCTTCATTGACCTCAGACAG ttaaacattacaatatgttatatgaggacatcttcttcttttgttgatagTGTTCGCCAGCTCTGAGCCTGTGCCAGGTTTCCAAGGGGACACCCTACAGCTTGCCTTTATTGACCTCAGGCAGgtaaagaattgataagaataccctttaccatcaatgtctttagtgacctc Alignment from Spaln_nt2Genome TGTTTGCCAGCTCTGAGCCTGTGCCAGGATTCCAAGGGGACACCCTGCAGCTGGCCTTCATTGACCTCAGACAG ttaaacattacaatatgttatatgaggacatcttcttcttttgttgatagTGTTCGCCAGCTCTGAGCCTGTGCCAGGTTTCCAAGGGGACACCCTACAGCTTGCCTTTATTGACCTCAGGCAGgtaaagaattgataagaataccctttaccatcaatgtctttagtgacctc Alignment from Pairagon TGTTTGCCAGCTCTGAGCCTGTGCCAGGATTCCAAGGGGACACCCTGCAGCTGGCCTTCATTGACCTCAGACAG ttaaacattacaatatgttatatgaggacatcttcttcttttgttgatagTGTTCGCCAGCTCTGAGCCTGTGCCAGGTTTCCAAGGGGACACCCTACAGCTTGCCTTTATTGACCTCAGGCAGgtaaagaattgataagaataccctttaccatcaatgtctttagtgacctc Alignment from Exonerate_protein2genome TGTTTGCCAGCTCTGAGCCTGTGCCAGGATTCCAAGGGGACACCCTGCAGCTGGCCTTCATTGACCTCAGACAG ttaaacattacaatatgttatatgaggacatcttcttcttttgttgatagTGTTCGCCAGCTCTGAGCCTGTGCCAGGTTTCCAAGGGGACACCCTACAGCTTGCCTTTATTGACCTCAGGCAGgtaaagaattgataagaataccctttaccatcaatgtctttagtgacctc Alignment from Exonerate_coding2genome TGTTTGCCAGCTCTGAGCCTGTGCCAGGATTCCAAGGGGACACCCTGCAGCTGGCCTTCATTGACCTCAGACAG ttaaacattacaatatgttatatgaggacatcttcttcttttgttgatagTGTTCGCCAGCTCTGAGCCTGTGCCAGGTTTCCAAGGGGACACCCTACAGCTTGCCTTTATTGACCTCAGGCAGgtaaagaattgataagaataccctttaccatcaatgtctttagtgacctc Alignment from GeneWise TGTTTGCCAGCTCTGAGCCTGTGCCAGGATTCCAAGGGGACACCCTGCAGCTGGCCTTCATTGACCTCAGACAG ttaaacattacaatatgttatatgaggacatcttcttcttttgttgatagTGTTCGCCAGCTCTGAGCCTGTGCCAGGTTTCCAAGGGGACACCCTACAGCTTGCCTTTATTGACCTCAGGCAGgtaaagaattgataagaataccctttaccatcaatgtctttagtgacctc #### Exosc1_ID8333_6 --> 0 - 0 Original Alignment GTAGAAATTTACAAGAGTTTTCGGCCAGGTGACATAGTTTTGGCCAAAGTT ccctaccaaaaaaccgatcccaactgcctcctttccttctctccttccagGTGGACATCTACAAGAGCTTTCAGCAAGGTGACATAGTTTTGGCAAAGGTTgcaagtttgcattaacaatatgcttattgagctttatatatattgacaac Alignment from CESAR GTAGAAATTTACAAGAGTTTTCGGCCAGGTGACATAGTTTTGGCCAAAGTT ccctaccaaaaaaccgatcccaactgcctcctttccttctctccttccagGTGGACATCTACAAGAGCTTTCAGCAAGGTGACATAGTTTTGGCAAAGGTTgcaagtttgcattaacaatatgcttattgagctttatatatattgacaac Alignment from Spaln_aa2Genome GTAGAAATTTACAAGAGTTTTCGGCCAGGTGACATAGTTTTGGCCAAAGTT ccctaccaaaaaaccgatcccaactgcctcctttccttctctccttccagGTGGACATCTACAAGAGCTTTCAGCAAGGTGACATAGTTTTGGCAAAGGTTgcaagtttgcattaacaatatgcttattgagctttatatatattgacaac Alignment from Spaln_nt2Genome GTAGAAATTTACAAGAGTTTTCGGCCAGGTGACATAGTTTTGGCCAAAGTT ccctaccaaaaaaccgatcccaactgcctcctttccttctctccttccagGTGGACATCTACAAGAGCTTTCAGCAAGGTGACATAGTTTTGGCAAAGGTTgcaagtttgcattaacaatatgcttattgagctttatatatattgacaac Alignment from Pairagon GTAGAAATTTACAAGAGTTTTCGGCCAGGTGACATAGTTTTGGCCAAAGTT ccctaccaaaaaaccgatcccaactgcctcctttccttctctccttccagGTGGACATCTACAAGAGCTTTCAGCAAGGTGACATAGTTTTGGCAAAGGTTgcaagtttgcattaacaatatgcttattgagctttatatatattgacaac Alignment from Exonerate_protein2genome GTAGAAATTTACAAGAGTTTTCGGCCAGGTGACATAGTTTTGGCCAAAGTT ccctaccaaaaaaccgatcccaactgcctcctttccttctctccttccagGTGGACATCTACAAGAGCTTTCAGCAAGGTGACATAGTTTTGGCAAAGGTTgcaagtttgcattaacaatatgcttattgagctttatatatattgacaac Alignment from Exonerate_coding2genome GTAGAAATTTACAAGAGTTTTCGGCCAGGTGACATAGTTTTGGCCAAAGTT ccctaccaaaaaaccgatcccaactgcctcctttccttctctccttccagGTGGACATCTACAAGAGCTTTCAGCAAGGTGACATAGTTTTGGCAAAGGTTgcaagtttgcattaacaatatgcttattgagctttatatatattgacaac Alignment from GeneWise GTAGAAATTTACAAGAGTTTTCGGCCAGGTGACATAGTTTTGGCCAAA ccctaccaaaaaaccgatcccaactgcctcctttccttctctccttccagGTGGACATCTACAAGAGCTTTCAGCAAGGTGACATAGTTTTGGCAAAGgttgcaagtttgcattaacaatatgcttattgagctttatatatattgacaac #### Fads3_ID2659_2 --> 0 - 0 Original Alignment GATGCCTTCCACGCCTTCCACCAAGATCTCCATTTTGTGCGCAAGTTCCTGAAACCCCTGTTGATTGGAGAGCTAGCCCCAGAGGAACCCAGCCAGGATGGAGCT---CAGAAT gcataaagtatctgtacagacagtgtccttgtgggaccatgttttttaagGATGCC---TATGCATTCCGGCAGGACATTCACTTTCTGCACAAGTTCCTTAAACCATTA---------GAGCTTACTCCTGAGGACCCTAGCCAAGATGGGTCACAACAAAATgtactgtatctgaaatatagtgtatctctcaaaggatgaattgccctggg Alignment from CESAR GATGCCTTCCACGCCTTCCACCAAGATCTCCATTTTGTGCGCAAGTTCCTGAAACCCCTGTTGATTGGAGAGCTAGCCCCAGAGGAACCCAGCCAGGATGGAGCT---CAGAAT gcataaagtatctgtacagacagtgtccttgtgggaccatgttttttaagGATGCCTAT---GCATTCCGGCAGGACATTCACTTTCTGCACAAGTTCCTTAAACCATTA---------GAGCTTACTCCTGAGGACCCTAGCCAAGATGGGTCACAACAAAATgtactgtatctgaaatatagtgtatctctcaaaggatgaattgccctggg Alignment from Spaln_aa2Genome GATGCCTTCCACGCCTTCCACCAAGATCTCCATTTTGTGCGCAAGTTCCTGAAACCCCTGTTGATTGGAGAGCTAGCCCCAGAGGAACCCAGCCAGGATGGAGCT---CAGAAT gcataaagtatctgtacagacagtgtccttgtgggaccatgttttttaagGATGCCTAT---GCATTCCGGCAGGACATTCACTTTCTGCACAAGTTCCTTAAACCATTA---------GAGCTTACTCCTGAGGACCCTAGCCAAGATGGGTCACAACAAAATgtactgtatctgaaatatagtgtatctctcaaaggatgaattgccctggg Alignment from Spaln_nt2Genome GATGCCTTCCACGCCTTCCACCAAGATCTCCATTTTGTGCGCAAGTTCCTGAAACCCCTGTTGATTGGAGAGCTAGCCCCAGAGGAACCCAGCCAGGATGGAGCTCAG---AAT gcataaagtatctgtacagacagtgtccttgtgggaccatgttttttaagGATGCCT---ATGCATTCCGGCAGGACATTCACTTTCTGCACAAGTTCCTTAAACC-------ATT--AGAGCTTACTCCTGAGGACCCTAGCCAAGATGGGTCACAACAAAATgtactgtatctgaaatatagtgtatctctcaaaggatgaattgccctggg Alignment from Pairagon GATGCCTTCCACGCCTTCCACCAAGATCTCCATTTTGTGCGCAAGTTCCTGAAACCCCTGTTGATTGGAGAGCTAGCCCCAGAGGAACCCAGCCAGGATGG gcataaagtatctgtacagacagtgtccttgtgggaccatgttttttaagGATGCCT---ATGCATTCCGGCAGGACATTCACTTTCTGCACAAGTTCCTTAAACCATT---------AGAGCTTACTCCTGAGGACCCTAGCCAAGATGGgtcacaacaaaatgtactgtatctgaaatatagtgtatctctcaaaggatgaattgccctggg Alignment from Exonerate_protein2genome GATGCCTTCCACGCCTTCCACCAAGATCTCCATTTTGTGCGCAAGTTCCTGAAACCCCTGTTGATTGGAGAGCTAGCCCCAGAGGAACCCAGCCAGGATGGAGCT---CAGAAT gcataaagtatctgtacagacagtgtccttgtgggaccatgttttttaagGATGCCTAT---GCATTCCGGCAGGACATTCACTTTCTGCACAAGTTCCTTAAACCATTA---------GAGCTTACTCCTGAGGACCCTAGCCAAGATGGGTCACAACAAAATgtactgtatctgaaatatagtgtatctctcaaaggatgaattgccctggg Alignment from Exonerate_coding2genome gcataaagtatctgtacagacagtgtccttgtgggaccatgttttttaaggatgcctatgcattccggcaggacattcactttctgcacaagttccttaaaccattagagcttactcctgaggaccctagccaagatgggtcacaacaaaatgtactgtatctgaaatatagtgtatctctcaaaggatgaattgccctggg Alignment from GeneWise GATGCCTTCCACGCCTTCCACCAAGATCTCCATTTTGTGCGCAAGTTCCTGAAACCCCTGTTGATTGGAGAGCTAGCCCCAGAGGAACCCAGCCAGGATGGAGCTCAG---AAT gcataaagtatctgtacagacagtgtccttgtgggaccatgttttttaagGATGCCTAT---GCATTCCGGCAGGACATTCACTTTCTGCACAAGTTCCTTAAACCATTA---------GAGCTTACTCCTGAGGACCCTAGCCAAGATGGGTCACAACAAAATgtactgtatctgaaatatagtgtatctctcaaaggatgaattgccctggg #### Fads3_ID2661_4 --> 0 - 0 Original Alignment GCCCAGTGCTGGTGTCTGCAACATGATCTAGGTCATGCTTCCATCTTCACTAAGTCCAGGTGGAACCATGTGGCCCAGCAGTTCGTGATGGGGCAGTTG------AAA gaggaccttatgccccaatgcctaaggtgttattcacattttattcttagGCTGAGTGCTGGTGTCTGCAACATGATCTAGGTCATGCAACCACCTTCACTAAGTCTAGGTGGAACCATGTGTCTGAGCAGTTTGTGATTGGACAGTTGAAAGTGAAAgtaagtgaagaggacaggtctgtgttcagtcagtgtctgtatgtgactcg Alignment from CESAR GCCCAGTGCTGGTGTCTGCAACATGATCTAGGTCATGCTTCCATCTTCACTAAGTCCAGGTGGAACCATGTGGCCCAGCAGTTCGTGATGGGGCAGTTGAAA gaggaccttatgccccaatgcctaaggtgttattcacattttattcttagGCTGAGTGCTGGTGTCTGCAACATGATCTAGGTCATGCAACCACCTTCACTAAGTCTAGGTGGAACCATGTGTCTGAGCAGTTTGTGATTGGACAGTTGAAAgtgaaagtaagtgaagaggacaggtctgtgttcagtcagtgtctgtatgtgactcg Alignment from Spaln_aa2Genome GCCCAGTGCTGGTGTCTGCAACATGATCTAGGTCATGCTTCCATCTTCACTAAGTCCAGGTGGAACCATGTGGCCCAGCAGTTCGTGATGGGGCAGTTGAAA gaggaccttatgccccaatgcctaaggtgttattcacattttattcttagGCTGAGTGCTGGTGTCTGCAACATGATCTAGGTCATGCAACCACCTTCACTAAGTCTAGGTGGAACCATGTGTCTGAGCAGTTTGTGATTGGACAGTTGAAAgtgaaagtaagtgaagaggacaggtctgtgttcagtcagtgtctgtatgtgactcg Alignment from Spaln_nt2Genome GCCCAGTGCTGGTGTCTGCAACATGATCTAGGTCATGCTTCCATCTTCACTAAGTCCAGGTGGAACCATGTGGCCCAGCAGTTCGTGATGGGGCAGTTGAAA gaggaccttatgccccaatgcctaaggtgttattcacattttattcttagGCTGAGTGCTGGTGTCTGCAACATGATCTAGGTCATGCAACCACCTTCACTAAGTCTAGGTGGAACCATGTGTCTGAGCAGTTTGTGATTGGACAGTTGAAAgtgaaagtaagtgaagaggacaggtctgtgttcagtcagtgtctgtatgtgactcg Alignment from Pairagon GCCCAGTGCTGGTGTCTGCAACATGATCTAGGTCATGCTTCCATCTTCACTAAGTCCAGGTGGAACCATGTGGCCCAGCAGTTCGTGATGGGGCAGTTGAAA gaggaccttatgccccaatgcctaaggtgttattcacattttattcttagGCTGAGTGCTGGTGTCTGCAACATGATCTAGGTCATGCAACCACCTTCACTAAGTCTAGGTGGAACCATGTGTCTGAGCAGTTTGTGATTGGACAGTTGAAAgtgaaagtaagtgaagaggacaggtctgtgttcagtcagtgtctgtatgtgactcg Alignment from Exonerate_protein2genome GCCCAGTGCTGGTGTCTGCAACATGATCTAGGTCATGCTTCCATCTTCACTAAGTCCAGGTGGAACCATGTGGCCCAGCAGTTCGTGATGGGGCAGTTGAAA gaggaccttatgccccaatgcctaaggtgttattcacattttattcttagGCTGAGTGCTGGTGTCTGCAACATGATCTAGGTCATGCAACCACCTTCACTAAGTCTAGGTGGAACCATGTGTCTGAGCAGTTTGTGATTGGACAGTTGAAAgtgaaagtaagtgaagaggacaggtctgtgttcagtcagtgtctgtatgtgactcg Alignment from Exonerate_coding2genome GCCCAGTGCTGGTGTCTGCAACATGATCTAGGTCATGCTTCCATCTTCACTAAGTCCAGGTGGAACCATGTGGCCCAGCAGTTCGTGATGGGGCAGTTGAAA gaggaccttatgccccaatgcctaaggtgttattcacattttattcttagGCTGAGTGCTGGTGTCTGCAACATGATCTAGGTCATGCAACCACCTTCACTAAGTCTAGGTGGAACCATGTGTCTGAGCAGTTTGTGATTGGACAGTTGAAAgtgaaagtaagtgaagaggacaggtctgtgttcagtcagtgtctgtatgtgactcg Alignment from GeneWise GCCCAGTGCTGGTGTCTGCAACATGATCTAGGTCATGCTTCCATCTTCACTAAGTCCAGGTGGAACCATGTGGCCCAGCAGTTCGTGATGGGGCAGTTGAAAGGCTTT gaggaccttatgccccaatgcctaaggtgttattcacattttattcttagGCTGAGTGCTGGTGTCTGCAACATGATCTAGGTCATGCAACCACCTTCACTAAGTCTAGGTGGAACCATGTGTCTGAGCAGTTTGTGATTGGACAGTTGAAAGTGAAAgtaagtgaagaggacaggtctgtgttcagtcagtgtctgtatgtgactcg #### Fads3_ID2664_7 --> 2 - 0 Original Alignment ttGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG tatcatttgtataccccatggccgagggtaaactcttttgcaacatttagttGGCCCACCGCTTTTCACGTTAGTGAATTATGAAGTTGAAAATCTGGCTTACATGTTGGTATGCATGCAGTGGACTgtaagcaacttgacttcaaaagctaaggtatgattggtctgttgaaaact Alignment from CESAR ttGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG tatcatttgtataccccatggccgagggtaaactcttttgcaacatttagttGGCCCACCGCTTTTCACGTTAGTGAATTATGAAGTTGAAAATCTGGCTTACATGTTGGTATGCATGCAGTGGACTgtaagcaacttgacttcaaaagctaaggtatgattggtctgttgaaaact Alignment from Spaln_aa2Genome TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG tatcatttgtataccccatggccgagggtaaactcttttgcaacatttagTTGGCCCACCGCTTTTCACGTTAGTGAATTATGAAGTTGAAAATCTGGCTTACATGTTGGTATGCATGCAGTGGACTgtaagcaacttgacttcaaaagctaaggtatgattggtctgttgaaaact Alignment from Spaln_nt2Genome TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG tatcatttgtataccccatggccgagggtaaactcttttgcaacatttagTTGGCCCACCGCTTTTCACGTTAGTGAATTATGAAGTTGAAAATCTGGCTTACATGTTGGTATGCATGCAGTGGACTgtaagcaacttgacttcaaaagctaaggtatgattggtctgttgaaaact Alignment from Pairagon TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG tatcatttgtataccccatggccgagggtaaactcttttgcaacatttagTTGGCCCACCGCTTTTCACGTTAGTGAATTATGAAGTTGAAAATCTGGCTTACATGTTGGTATGCATGCAGTGGACTgtaagcaacttgacttcaaaagctaaggtatgattggtctgttgaaaact Alignment from Exonerate_protein2genome TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG tatcatttgtataccccatggccgagggtaaactcttttgcaacatttagTTGGCCCACCGCTTTTCACGTTAGTGAATTATGAAGTTGAAAATCTGGCTTACATGTTGGTATGCATGCAGTGGACTgtaagcaacttgacttcaaaagctaaggtatgattggtctgttgaaaact Alignment from Exonerate_coding2genome TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG tatcatttgtataccccatggccgagggtaaactcttttgcaacatttagTTGGCCCACCGCTTTTCACGTTAGTGAATTATGAAGTTGAAAATCTGGCTTACATGTTGGTATGCATGCAGTGGACTgtaagcaacttgacttcaaaagctaaggtatgattggtctgttgaaaact Alignment from GeneWise TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG tatcatttgtataccccatggccgagggtaaactcttttgcaacatttagTTGGCCCACCGCTTTTCACGTTAGTGAATTATGAAGTTGAAAATCTGGCTTACATGTTGGTATGCATGCAGTGGACTgtaagcaacttgacttcaaaagctaaggtatgattggtctgttgaaaact #### Fam160b1_ID12358_9 --> 0 - 2 Original Alignment ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGac gtcatagtatggatgtcatatgtcttcttttactgtgaaatgcattgcagACAGCTGCTGTAGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTTGTTGGTGTTACAGAACCCCAACTGATGCAAacgtatgtgtttactaactttgtagaaaacaaaccttgctgaatcttttcct Alignment from CESAR ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGac gtcatagtatggatgtcatatgtcttcttttactgtgaaatgcattgcagACAGCTGCTGTAGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTTGTTGGTGTTACAGAACCCCAACTGATGCAAacgtatgtgtttactaactttgtagaaaacaaaccttgctgaatcttttcct Alignment from Spaln_aa2Genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC gtcatagtatggatgtcatatgtcttcttttactgtgaaatgcattgcagACAGCTGCTGTAGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTTGTTGGTGTTACAGAACCCCAACTGATGCAAACgtatgtgtttactaactttgtagaaaacaaaccttgctgaatcttttcct Alignment from Spaln_nt2Genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC gtcatagtatggatgtcatatgtcttcttttactgtgaaatgcattgcagACAGCTGCTGTAGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTTGTTGGTGTTACAGAACCCCAACTGATGCAAACgtatgtgtttactaactttgtagaaaacaaaccttgctgaatcttttcct Alignment from Pairagon ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC gtcatagtatggatgtcatatgtcttcttttactgtgaaatgcattgcagACAGCTGCTGTAGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTTGTTGGTGTTACAGAACCCCAACTGATGCAAACgtatgtgtttactaactttgtagaaaacaaaccttgctgaatcttttcct Alignment from Exonerate_protein2genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC gtcatagtatggatgtcatatgtcttcttttactgtgaaatgcattgcagACAGCTGCTGTAGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTTGTTGGTGTTACAGAACCCCAACTGATGCAAACgtatgtgtttactaactttgtagaaaacaaaccttgctgaatcttttcct Alignment from Exonerate_coding2genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC gtcatagtatggatgtcatatgtcttcttttactgtgaaatgcattgcagACAGCTGCTGTAGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTTGTTGGTGTTACAGAACCCCAACTGATGCAAACgtatgtgtttactaactttgtagaaaacaaaccttgctgaatcttttcct Alignment from GeneWise ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC gtcatagtatggatgtcatatgtcttcttttactgtgaaatgcattgcagACAGCTGCTGTAGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTTGTTGGTGTTACAGAACCCCAACTGATGCAAACgtatgtgtttactaactttgtagaaaacaaaccttgctgaatcttttcct #### Fam160b1_ID12360_11 --> 0 - 2 Original Alignment ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCgt tatgagcagacaattctcagaaggagatcttttcctttctctaccgtcagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTTCAAAAGCCCAATGAGCACATCCTCTACAACCTGGTCTTAAGGAACCTGGAGGAGAGAAACTACACAGAGAACAAACCTTCCTGCCCAGAAGACAAAGATGTAGTAGAGAATGGACTAATAGCAGGAGCTgtgtgagtacccccactgtatgtcagaaatatataatcttacttactgtatg Alignment from CESAR ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCgt tatgagcagacaattctcagaaggagatcttttcctttctctaccgtcagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTTCAAAAGCCCAATGAGCACATCCTCTACAACCTGGTCTTAAGGAACCTGGAGGAGAGAAACTACACAGAGAACAAACCTTCCTGCCCAGAAGACAAAGATGTAGTAGAGAATGGACTAATAGCAGGAGCTgtgtgagtacccccactgtatgtcagaaatatataatcttacttactgtatg Alignment from Spaln_aa2Genome ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT tatgagcagacaattctcagaaggagatcttttcctttctctaccgtcagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTTCAAAAGCCCAATGAGCACATCCTCTACAACCTGGTCTTAAGGAACCTGGAGGAGAGAAACTACACAGAGAACAAACCTTCCTGCCCAGAAGACAAAGATGTAGTAGAGAATGGACTAATAGCAGGAGCTGTgtgagtacccccactgtatgtcagaaatatataatcttacttactgtatg Alignment from Spaln_nt2Genome ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT tatgagcagacaattctcagaaggagatcttttcctttctctaccgtcagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTTCAAAAGCCCAATGAGCACATCCTCTACAACCTGGTCTTAAGGAACCTGGAGGAGAGAAACTACACAGAGAACAAACCTTCCTGCCCAGAAGACAAAGATGTAGTAGAGAATGGACTAATAGCAGGAGCTGTgtgagtacccccactgtatgtcagaaatatataatcttacttactgtatg Alignment from Pairagon ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT tatgagcagacaattctcagaaggagatcttttcctttctctaccgtcagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTTCAAAAGCCCAATGAGCACATCCTCTACAACCTGGTCTTAAGGAACCTGGAGGAGAGAAACTACACAGAGAACAAACCTTCCTGCCCAGAAGACAAAGATGTAGTAGAGAATGGACTAATAGCAGGAGCTGTgtgagtacccccactgtatgtcagaaatatataatcttacttactgtatg Alignment from Exonerate_protein2genome ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT tatgagcagacaattctcagaaggagatcttttcctttctctaccgtcagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTTCAAAAGCCCAATGAGCACATCCTCTACAACCTGGTCTTAAGGAACCTGGAGGAGAGAAACTACACAGAGAACAAACCTTCCTGCCCAGAAGACAAAGATGTAGTAGAGAATGGACTAATAGCAGGAGCTGTgtgagtacccccactgtatgtcagaaatatataatcttacttactgtatg Alignment from Exonerate_coding2genome ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT tatgagcagacaattctcagaaggagatcttttcctttctctaccgtcagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTTCAAAAGCCCAATGAGCACATCCTCTACAACCTGGTCTTAAGGAACCTGGAGGAGAGAAACTACACAGAGAACAAACCTTCCTGCCCAGAAGACAAAGATGTAGTAGAGAATGGACTAATAGCAGGAGCTGTgtgagtacccccactgtatgtcagaaatatataatcttacttactgtatg Alignment from GeneWise ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT tatgagcagacaattctcagaaggagatcttttcctttctctaccgtcagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTTCAAAAGCCCAATGAGCACATCCTCTACAACCTGGTCTTAAGGAACCTGGAGGAGAGAAACTACACAGAGAACAAACCTTCCTGCCCAGAAGACAAAGATGTAGTAGAGAATGGACTAATAGCAGGAGCTGTgtgagtacccccactgtatgtcagaaatatataatcttacttactgtatg #### Fam160b1_ID12362_13 --> 1 - 0 Original Alignment tTTTCTCTGTCTAGTGCCAGATGACGCAAAGTCCTCCTACCACGTGGAGGGCACCGGCTATGACACCTACCTCCGAGACGCCCACAGGCAG cactctgtatctagattctgacatttatatacatttctgttgttttttagtTTTCTTTGTGTAGTGCAAGATGATGTACAATCATTCTACCACATAGAGGGAACCAGTTATGAGACTTACCTCCGACATACCCAAAGACAAgtaggcggcagacctggagatactgatggacacaaatctatagtggtccc Alignment from CESAR tTTTCTCTGTCTAGTGCCAGATGACGCAAAGTCCTCCTACCACGTGGAGGGCACCGGCTATGACACCTACCTCCGAGACGCCCACAGGCAG cactctgtatctagattctgacatttatatacatttctgttgttttttagtTTTCTTTGTGTAGTGCAAGATGATGTACAATCATTCTACCACATAGAGGGAACCAGTTATGAGACTTACCTCCGACATACCCAAAGACAAgtaggcggcagacctggagatactgatggacacaaatctatagtggtccc Alignment from Spaln_aa2Genome TTTTCTCTGTCTAGTGCCAGATGACGCAAAGTCCTCCTACCACGTGGAGGGCACCGGCTATGACACCTACCTCCGAGACGCCCACAGGCAG cactctgtatctagattctgacatttatatacatttctgttgttttttagTTTTCTTTGTGTAGTGCAAGATGATGTACAATCATTCTACCACATAGAGGGAACCAGTTATGAGACTTACCTCCGACATACCCAAAGACAAgtaggcggcagacctggagatactgatggacacaaatctatagtggtccc Alignment from Spaln_nt2Genome TTTTCTCTGTCTAGTGCCAGATGACGCAAAGTCCTCCTACCACGTGGAGGGCACCGGCTATGACACCTACCTCCGAGACGCCCACAGGCAG cactctgtatctagattctgacatttatatacatttctgttgttttttagTTTTCTTTGTGTAGTGCAAGATGATGTACAATCATTCTACCACATAGAGGGAACCAGTTATGAGACTTACCTCCGACATACCCAAAGACAAgtaggcggcagacctggagatactgatggacacaaatctatagtggtccc Alignment from Pairagon TTTTCTCTGTCTAGTGCCAGATGACGCAAAGTCCTCCTACCACGTGGAGGGCACCGGCTATGACACCTACCTCCGAGACGCCCACAGGCAG cactctgtatctagattctgacatttatatacatttctgttgttttttagTTTTCTTTGTGTAGTGCAAGATGATGTACAATCATTCTACCACATAGAGGGAACCAGTTATGAGACTTACCTCCGACATACCCAAAGACAAgtaggcggcagacctggagatactgatggacacaaatctatagtggtccc Alignment from Exonerate_protein2genome TTTTCTCTGTCTAGTGCCAGATGACGCAAAGTCCTCCTACCACGTGGAGGGCACCGGCTATGACACCTACCTCCGAGACGCCCACAGGCAG cactctgtatctagattctgacatttatatacatttctgttgttttttagTTTTCTTTGTGTAGTGCAAGATGATGTACAATCATTCTACCACATAGAGGGAACCAGTTATGAGACTTACCTCCGACATACCCAAAGACAAgtaggcggcagacctggagatactgatggacacaaatctatagtggtccc Alignment from Exonerate_coding2genome cactctgtatctagattctgacatttatatacatttctgttgttttttagttttctttgtgtagtgcaagatgatgtacaatcattctaccacatagagggaaccagttatgagacttacctccgacatacccaaagacaagtaggcggcagacctggagatactgatggacacaaatctatagtggtccc Alignment from GeneWise TTTTCTCTGTCTAGTGCCAGATGACGCAAAGTCCTCCTACCACGTGGAGGGCACCGGCTATGACACCTACCTCCGAGACGCCCACAGGCAG cactctgtatctagattctgacatttatatacatttctgttgttttttagTTTTCTTTGTGTAGTGCAAGATGATGTACAATCATTCTACCACATAGAGGGAACCAGTTATGAGACTTACCTCCGACATACCCAAAGACAAgtaggcggcagacctggagatactgatggacacaaatctatagtggtccc #### Fam160b1_ID12363_14 --> 0 - 0 Original Alignment TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG gtccctactcttcatacttgctgtttagtcgctatcaatctcctttctagTACCGAGATTTCTGTGCAATCTGCTCACGATGGGAATGGCCAGGAGCCCCCAAACCACTG------TGTGACCTAGAGGCAGCTTTCTTTGAAGGACATTTTTTGAAAGTTCTGTACGGGCGGATGGGAAGAAATCTTGATCAAgtaatgacttgaaaggtcaaccctcgttgttttcctgaaggtacaaaaaa Alignment from CESAR TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG gtccctactcttcatacttgctgtttagtcgctatcaatctcctttctagTACCGAGATTTCTGTGCAATCTGCTCACGATGGGAATGGCCAGGAGCCCCCAAACCACTG------TGTGACCTAGAGGCAGCTTTCTTTGAAGGACATTTTTTGAAAGTTCTGTACGGGCGGATGGGAAGAAATCTTGATCAAgtaatgacttgaaaggtcaaccctcgttgttttcctgaaggtacaaaaaa Alignment from Spaln_aa2Genome TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG gtccctactcttcatacttgctgtttagtcgctatcaatctcctttctagTACCGAGATTTCTGTGCAATCTGCTCACGATGGGAATGGCCAGGAGCCCCCAAACCACTG------TGTGACCTAGAGGCAGCTTTCTTTGAAGGACATTTTTTGAAAGTTCTGTACGGGCGGATGGGAAGAAATCTTGATCAAgtaatgacttgaaaggtcaaccctcgttgttttcctgaaggtacaaaaaa Alignment from Spaln_nt2Genome TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG gtccctactcttcatacttgctgtttagtcgctatcaatctcctttctagTACCGAGATTTCTGTGCAATCTGCTCACGATGGGAATGGCCAGGAGCCCCCAAACCACT------GTGTGACCTAGAGGCAGCTTTCTTTGAAGGACATTTTTTGAAAGTTCTGTACGGGCGGATGGGAAGAAATCTTGATCAAgtaatgacttgaaaggtcaaccctcgttgttttcctgaaggtacaaaaaa Alignment from Pairagon TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG gtccctactcttcatacttgctgtttagtcgctatcaatctcctttctagTACCGAGATTTCTGTGCAATCTGCTCACGATGGGAATGGCCAGGAGCCCCCAAACCACT------GTGTGACCTAGAGGCAGCTTTCTTTGAAGGACATTTTTTGAAAGTTCTGTACGGGCGGATGGGAAGAAATCTTGATCAAgtaatgacttgaaaggtcaaccctcgttgttttcctgaaggtacaaaaaa Alignment from Exonerate_protein2genome TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG gtccctactcttcatacttgctgtttagtcgctatcaatctcctttctagTACCGAGATTTCTGTGCAATCTGCTCACGATGGGAATGGCCAGGAGCCCCCAAACCACTG------TGTGACCTAGAGGCAGCTTTCTTTGAAGGACATTTTTTGAAAGTTCTGTACGGGCGGATGGGAAGAAATCTTGATCAAgtaatgacttgaaaggtcaaccctcgttgttttcctgaaggtacaaaaaa Alignment from Exonerate_coding2genome gtccctactcttcatacttgctgtttagtcgctatcaatctcctttctagtaccgagatttctgtgcaatctgctcacgatgggaatggccaggagcccccaaaccactgtgtgacctagaggcagctttctttgaaggacattttttgaaagttctgtacgggcggatgggaagaaatcttgatcaagtaatgacttgaaaggtcaaccctcgttgttttcctgaaggtacaaaaaa Alignment from GeneWise TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG gtccctactcttcatacttgctgtttagtcgctatcaatctcctttctagTACCGAGATTTCTGTGCAATCTGCTCACGATGGGAATGGCCAGGAGCCCCCAAACCACTG------TGTGACCTAGAGGCAGCTTTCTTTGAAGGACATTTTTTGAAAGTTCTGTACGGGCGGATGGGAAGAAATCTTGATCAAgtaatgacttgaaaggtcaaccctcgttgttttcctgaaggtacaaaaaa #### Fam178a_ID9221_4 --> 0 - 1 Original Alignment GAAAATGGACATCTCTCAAGAAAAAGATCATCTTCAGACTCGTGGGAACTTTCAg gataaatgctgtagttttctctgggcctggtgttttcttttgttttgtagGAAAATGGACATCTCTCAAGAAAGAGATCATCTTCTGACTTATGGGTATTCTCTggtaggaagctaagggagtacaaatcctttctgtggtggtcctgaagcgtc Alignment from CESAR GAAAATGGACATCTCTCAAGAAAAAGATCATCTTCAGACTCGTGGGAACTTTCAg gataaatgctgtagttttctctgggcctggtgttttcttttgttttgtagGAAAATGGACATCTCTCAAGAAAGAGATCATCTTCTGACTTATGGGTATTCTCTggtaggaagctaagggagtacaaatcctttctgtggtggtcctgaagcgtc Alignment from Spaln_aa2Genome GAAAATGGACATCTCTCAAGAAAAAGATCATCTTCAGACTCGTGGGAACTTTCAG gataaatgctgtagttttctctgggcctggtgttttcttttgttttgtagGAAAATGGACATCTCTCAAGAAAGAGATCATCTTCTGACTTATGGGTATTCTCTGgtaggaagctaagggagtacaaatcctttctgtggtggtcctgaagcgtc Alignment from Spaln_nt2Genome GAAAATGGACATCTCTCAAGAAAAAGATCATCTTCAGACTCGTGGGAACTTTCAG gataaatgctgtagttttctctgggcctggtgttttcttttgttttgtagGAAAATGGACATCTCTCAAGAAAGAGATCATCTTCTGACTTATGGGTATTCTCTGgtaggaagctaagggagtacaaatcctttctgtggtggtcctgaagcgtc Alignment from Pairagon GAAAATGGACATCTCTCAAGAAAAAGATCATCTTCAGACTCGTGGGAACTTTCAG gataaatgctgtagttttctctgggcctggtgttttcttttgttttgtagGAAAATGGACATCTCTCAAGAAAGAGATCATCTTCTGACTTATGGGTATTCTCTGgtaggaagctaagggagtacaaatcctttctgtggtggtcctgaagcgtc Alignment from Exonerate_protein2genome GAAAATGGACATCTCTCAAGAAAAAGATCATCTTCAGACTCGTGGGAACTTTCAG gataaatgctgtagttttctctgggcctggtgttttcttttgttttgtagGAAAATGGACATCTCTCAAGAAAGAGATCATCTTCTGACTTATGGGTATTCTCTGgtaggaagctaagggagtacaaatcctttctgtggtggtcctgaagcgtc Alignment from Exonerate_coding2genome GAAAATGGACATCTCTCAAGAAAAAGATCATCTTCAGACTCGTGGGAACTTTCAG gataaatgctgtagttttctctgggcctggtgttttcttttgttttgtagGAAAATGGACATCTCTCAAGAAAGAGATCATCTTCTGACTTATGGGTATTCTCTGgtaggaagctaagggagtacaaatcctttctgtggtggtcctgaagcgtc Alignment from GeneWise GAAAATGGACATCTCTCAAGAAAAAGATCATCTTCAGACTCGTGGGAACTTTCAG gataaatgctgtagttttctctgggcctggtgttttcttttgttttgtagGAAAATGGACATCTCTCAAGAAAGAGATCATCTTCTGACTTATGGGTATTCTCTGgtaggaagctaagggagtacaaatcctttctgtggtggtcctgaagcgtc #### Fam178a_ID9225_6 --> 0 - 2 Original Alignment GAATATGCTCAGAGCGGAACTTACACAAATACCTTAGAGCGACTAGTAAAGGAGATGGAAGACACGCAGag acatgtgaactatgagactccccttaaatccggacttgctttccccacagGAGTATACTCGAAGTGGAATATCCATAAATTCATTAGAGCAAGTCATAAAGAAAATGAAAGACACACAGcggtgagctataccatatgttccttaaaagatttacttgtccccacctttta Alignment from CESAR GAATATGCTCAGAGCGGAACTTACACAAATACCTTAGAGCGACTAGTAAAGGAGATGGAAGACACGCAGag acatgtgaactatgagactccccttaaatccggacttgctttccccacagGAGTATACTCGAAGTGGAATATCCATAAATTCATTAGAGCAAGTCATAAAGAAAATGAAAGACACACAGcggtgagctataccatatgttccttaaaagatttacttgtccccacctttta Alignment from Spaln_aa2Genome GAATATGCTCAGAGCGGAACTTACACAAATACCTTAGAGCGACTAGTAAAGGAGATGGAAGACACGCAGAG acatgtgaactatgagactccccttaaatccggacttgctttccccacagGAGTATACTCGAAGTGGAATATCCATAAATTCATTAGAGCAAGTCATAAAGAAAATGAAAGACACACAGCGgtgagctataccatatgttccttaaaagatttacttgtccccacctttta Alignment from Spaln_nt2Genome GAATATGCTCAGAGCGGAACTTACACAAATACCTTAGAGCGACTAGTAAAGGAGATGGAAGACACGCAGAG acatgtgaactatgagactccccttaaatccggacttgctttccccacagGAGTATACTCGAAGTGGAATATCCATAAATTCATTAGAGCAAGTCATAAAGAAAATGAAAGACACACAGCGgtgagctataccatatgttccttaaaagatttacttgtccccacctttta Alignment from Pairagon GAATATGCTCAGAGCGGAACTTACACAAATACCTTAGAGCGACTAGTAAAGGAGATGGAAGACACGCAGAG acatgtgaactatgagactccccttaaatccggacttgctttccccacagGAGTATACTCGAAGTGGAATATCCATAAATTCATTAGAGCAAGTCATAAAGAAAATGAAAGACACACAGCGgtgagctataccatatgttccttaaaagatttacttgtccccacctttta Alignment from Exonerate_protein2genome GAATATGCTCAGAGCGGAACTTACACAAATACCTTAGAGCGACTAGTAAAGGAGATGGAAGACACGCAGAG acatgtgaactatgagactccccttaaatccggacttgctttccccacagGAGTATACTCGAAGTGGAATATCCATAAATTCATTAGAGCAAGTCATAAAGAAAATGAAAGACACACAGCGgtgagctataccatatgttccttaaaagatttacttgtccccacctttta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAATATGCTCAGAGCGGAACTTACACAAATACCTTAGAGCGACTAGTAAAGGAGATGGAAGACACGCAGAG acatgtgaactatgagactccccttaaatccggacttgctttccccacagGAGTATACTCGAAGTGGAATATCCATAAATTCATTAGAGCAAGTCATAAAGAAAATGAAAGACACACAGCGgtgagctataccatatgttccttaaaagatttacttgtccccacctttta #### Fam178a_ID9233_14 --> 0 - 2 Original Alignment GTTCATGAACTCTGTCTGGGCATAAATGAACTCTCCAGTCATCCCCATAACCTTCTTTGGTTGGTACAGCTAGTCCCTAACTGGACATCTCGTGGAag tcaaatgcattctatagacagttgccttagggctttctctgcccctccagGTGCATGAACTGTGTCTGGGCATTAATGAGCTCTCCAGCCGTCCCCATAATCTACTTTGGATAGTGCAATTGGTACCCAACTGGACATCACGAGGTaggtgagtataaaagtgatcatgaggttaataccctggtaaacatagtcata Alignment from CESAR GTTCATGAACTCTGTCTGGGCATAAATGAACTCTCCAGTCATCCCCATAACCTTCTTTGGTTGGTACAGCTAGTCCCTAACTGGACATCTCGTGGAag tcaaatgcattctatagacagttgccttagggctttctctgcccctccagGTGCATGAACTGTGTCTGGGCATTAATGAGCTCTCCAGCCGTCCCCATAATCTACTTTGGATAGTGCAATTGGTACCCAACTGGACATCACGAGGTaggtgagtataaaagtgatcatgaggttaataccctggtaaacatagtcata Alignment from Spaln_aa2Genome GTTCATGAACTCTGTCTGGGCATAAATGAACTCTCCAGTCATCCCCATAACCTTCTTTGGTTGGTACAGCTAGTCCCTAACTGGACATCTCGTGGAAG tcaaatgcattctatagacagttgccttagggctttctctgcccctccagGTGCATGAACTGTGTCTGGGCATTAATGAGCTCTCCAGCCGTCCCCATAATCTACTTTGGATAGTGCAATTGGTACCCAACTGGACATCACGAGGTAGgtgagtataaaagtgatcatgaggttaataccctggtaaacatagtcata Alignment from Spaln_nt2Genome GTTCATGAACTCTGTCTGGGCATAAATGAACTCTCCAGTCATCCCCATAACCTTCTTTGGTTGGTACAGCTAGTCCCTAACTGGACATCTCGTGGAAG tcaaatgcattctatagacagttgccttagggctttctctgcccctccagGTGCATGAACTGTGTCTGGGCATTAATGAGCTCTCCAGCCGTCCCCATAATCTACTTTGGATAGTGCAATTGGTACCCAACTGGACATCACGAGGTAGgtgagtataaaagtgatcatgaggttaataccctggtaaacatagtcata Alignment from Pairagon GTTCATGAACTCTGTCTGGGCATAAATGAACTCTCCAGTCATCCCCATAACCTTCTTTGGTTGGTACAGCTAGTCCCTAACTGGACATCTCGTGGAAG tcaaatgcattctatagacagttgccttagggctttctctgcccctccagGTGCATGAACTGTGTCTGGGCATTAATGAGCTCTCCAGCCGTCCCCATAATCTACTTTGGATAGTGCAATTGGTACCCAACTGGACATCACGAGGTAGgtgagtataaaagtgatcatgaggttaataccctggtaaacatagtcata Alignment from Exonerate_protein2genome GTTCATGAACTCTGTCTGGGCATAAATGAACTCTCCAGTCATCCCCATAACCTTCTTTGGTTGGTACAGCTAGTCCCTAACTGGACATCTCGTGGAAG tcaaatgcattctatagacagttgccttagggctttctctgcccctccagGTGCATGAACTGTGTCTGGGCATTAATGAGCTCTCCAGCCGTCCCCATAATCTACTTTGGATAGTGCAATTGGTACCCAACTGGACATCACGAGGTAGgtgagtataaaagtgatcatgaggttaataccctggtaaacatagtcata Alignment from Exonerate_coding2genome tcaaatgcattctatagacagttgccttagggctttctctgcccctccaggtgcatgaactgtgtctgggcattaatgagctctccagccgtccccataatctactttggatagtgcaattggtacccaactggacatcacgaggtaggtgagtataaaagtgatcatgaggttaataccctggtaaacatagtcata Alignment from GeneWise GTTCATGAACTCTGTCTGGGCATAAATGAACTCTCCAGTCATCCCCATAACCTTCTTTGGTTGGTACAGCTAGTCCCTAACTGGACATCTCGTGGAAG tcaaatgcattctatagacagttgccttagggctttctctgcccctccagGTGCATGAACTGTGTCTGGGCATTAATGAGCTCTCCAGCCGTCCCCATAATCTACTTTGGATAGTGCAATTGGTACCCAACTGGACATCACGAGGTAGgtgagtataaaagtgatcatgaggttaataccctggtaaacatagtcata #### Fam45a_ID13336_4 --> 1 - 1 Original Alignment aATATATTTGAAATATGGAAGTCCGGTTAAAATGATGGAGAGTTACATTGCAGTTCTCACCAAGGGGATCTGCCAGAGTGAAGAAAATGGCTCTTTCCTTAGTAGAGACTTTGATGGTCGAAAGGCATACCTTGCTGGCTCCATCAAAg tattctgtatattacctgcactttcacccatgttttctgttgtgttccagaTTCTATTTAAAGTATGGAGGCTCAGTTAAAATGATGGAGAGCTACATAGCGGTCCTTACCAAGGGGATCTGCCAAAGTGAAGAAAATGGCTCATTCCTTAGTAGAGACTTTGATGGTCGAAAGGCCTACCTTGCTGGCTCCAAGAAAggtaagtagagcaggtgaccattcagacagcgtatgtgacaaaccctatat Alignment from CESAR aATATATTTGAAATATGGAAGTCCGGTTAAAATGATGGAGAGTTACATTGCAGTTCTCACCAAGGGGATCTGCCAGAGTGAAGAAAATGGCTCTTTCCTTAGTAGAGACTTTGATGGTCGAAAGGCATACCTTGCTGGCTCCATCAAAg tattctgtatattacctgcactttcacccatgttttctgttgtgttccagaTTCTATTTAAAGTATGGAGGCTCAGTTAAAATGATGGAGAGCTACATAGCGGTCCTTACCAAGGGGATCTGCCAAAGTGAAGAAAATGGCTCATTCCTTAGTAGAGACTTTGATGGTCGAAAGGCCTACCTTGCTGGCTCCAAGAAAggtaagtagagcaggtgaccattcagacagcgtatgtgacaaaccctatat Alignment from Spaln_aa2Genome AATATATTTGAAATATGGAAGTCCGGTTAAAATGATGGAGAGTTACATTGCAGTTCTCACCAAGGGGATCTGCCAGAGTGAAGAAAATGGCTCTTTCCTTAGTAGAGACTTTGATGGTCGAAAGGCATACCTTGCTGGCTCCATCAAAG tattctgtatattacctgcactttcacccatgttttctgttgtgttccagATTCTATTTAAAGTATGGAGGCTCAGTTAAAATGATGGAGAGCTACATAGCGGTCCTTACCAAGGGGATCTGCCAAAGTGAAGAAAATGGCTCATTCCTTAGTAGAGACTTTGATGGTCGAAAGGCCTACCTTGCTGGCTCCAAGAAAGgtaagtagagcaggtgaccattcagacagcgtatgtgacaaaccctatat Alignment from Spaln_nt2Genome AATATATTTGAAATATGGAAGTCCGGTTAAAATGATGGAGAGTTACATTGCAGTTCTCACCAAGGGGATCTGCCAGAGTGAAGAAAATGGCTCTTTCCTTAGTAGAGACTTTGATGGTCGAAAGGCATACCTTGCTGGCTCCATCAAAG tattctgtatattacctgcactttcacccatgttttctgttgtgttccagATTCTATTTAAAGTATGGAGGCTCAGTTAAAATGATGGAGAGCTACATAGCGGTCCTTACCAAGGGGATCTGCCAAAGTGAAGAAAATGGCTCATTCCTTAGTAGAGACTTTGATGGTCGAAAGGCCTACCTTGCTGGCTCCAAGAAAGgtaagtagagcaggtgaccattcagacagcgtatgtgacaaaccctatat Alignment from Pairagon AATATATTTGAAATATGGAAGTCCGGTTAAAATGATGGAGAGTTACATTGCAGTTCTCACCAAGGGGATCTGCCAGAGTGAAGAAAATGGCTCTTTCCTTAGTAGAGACTTTGATGGTCGAAAGGCATACCTTGCTGGCTCCATCAAAG tattctgtatattacctgcactttcacccatgttttctgttgtgttccagATTCTATTTAAAGTATGGAGGCTCAGTTAAAATGATGGAGAGCTACATAGCGGTCCTTACCAAGGGGATCTGCCAAAGTGAAGAAAATGGCTCATTCCTTAGTAGAGACTTTGATGGTCGAAAGGCCTACCTTGCTGGCTCCAAGAAAGgtaagtagagcaggtgaccattcagacagcgtatgtgacaaaccctatat Alignment from Exonerate_protein2genome AATATATTTGAAATATGGAAGTCCGGTTAAAATGATGGAGAGTTACATTGCAGTTCTCACCAAGGGGATCTGCCAGAGTGAAGAAAATGGCTCTTTCCTTAGTAGAGACTTTGATGGTCGAAAGGCATACCTTGCTGGCTCCATCAAAG tattctgtatattacctgcactttcacccatgttttctgttgtgttccagATTCTATTTAAAGTATGGAGGCTCAGTTAAAATGATGGAGAGCTACATAGCGGTCCTTACCAAGGGGATCTGCCAAAGTGAAGAAAATGGCTCATTCCTTAGTAGAGACTTTGATGGTCGAAAGGCCTACCTTGCTGGCTCCAAGAAAGgtaagtagagcaggtgaccattcagacagcgtatgtgacaaaccctatat Alignment from Exonerate_coding2genome AATATATTTGAAATATGGAAGTCCGGTTAAAATGATGGAGAGTTACATTGCAGTTCTCACCAAGGGGATCTGCCAGAGTGAAGAAAATGGCTCTTTCCTTAGTAGAGACTTTGATGGTCGAAAGGCATACCTTGCTGGCTCCATCAAAG tattctgtatattacctgcactttcacccatgttttctgttgtgttccagATTCTATTTAAAGTATGGAGGCTCAGTTAAAATGATGGAGAGCTACATAGCGGTCCTTACCAAGGGGATCTGCCAAAGTGAAGAAAATGGCTCATTCCTTAGTAGAGACTTTGATGGTCGAAAGGCCTACCTTGCTGGCTCCAAGAAAGgtaagtagagcaggtgaccattcagacagcgtatgtgacaaaccctatat Alignment from GeneWise AATATATTTGAAATATGGAAGTCCGGTTAAAATGATGGAGAGTTACATTGCAGTTCTCACCAAGGGGATCTGCCAGAGTGAAGAAAATGGCTCTTTCCTTAGTAGAGACTTTGATGGTCGAAAGGCATACCTTGCTGGCTCCATCAAAG tattctgtatattacctgcactttcacccatgttttctgttgtgttccagATTCTATTTAAAGTATGGAGGCTCAGTTAAAATGATGGAGAGCTACATAGCGGTCCTTACCAAGGGGATCTGCCAAAGTGAAGAAAATGGCTCATTCCTTAGTAGAGACTTTGATGGTCGAAAGGCCTACCTTGCTGGCTCCAAGAAAGgtaagtagagcaggtgaccattcagacagcgtatgtgacaaaccctatat #### Fam45a_ID13339_7 --> 2 - 1 Original Alignment gcTACATTGCTGGCTTTGTAGAATTGGAGGTGAGCAACAGACCAGACCTCTATGACGTGTTTGTGAATCTGGCAGATAGTGAGATCACCATCGCTCCACTTGCAAAAg cttatccagtaatttggtcgactcagcaactttaatgctgctgtttctaggcTACATTGTTGGCTTCGTAGAATTGGAAGTGAGCAACAGACCAGACCTCTATGATGTATTTGTGAATTTAGCAGACAGTGAGATCACCATCGCTCCACTTGCGAAGagtatcagctgtacccaacctaccgccccgcattcaccactaaatatttgt Alignment from CESAR gcTACATTGCTGGCTTTGTAGAATTGGAGGTGAGCAACAGACCAGACCTCTATGACGTGTTTGTGAATCTGGCAGATAGTGAGATCACCATCGCTCCACTTGCAAAAg cttatccagtaatttggtcgactcagcaactttaatgctgctgtttctaggcTACATTGTTGGCTTCGTAGAATTGGAAGTGAGCAACAGACCAGACCTCTATGATGTATTTGTGAATTTAGCAGACAGTGAGATCACCATCGCTCCACTTGCGAAGagtatcagctgtacccaacctaccgccccgcattcaccactaaatatttgt Alignment from Spaln_aa2Genome GCTACATTGCTGGCTTTGTAGAATTGGAGGTGAGCAACAGACCAGACCTCTATGACGTGTTTGTGAATCTGGCAGATAGTGAGATCACCATCGCTCCACTTGCAAAAG cttatccagtaatttggtcgactcagcaactttaatgctgctgtttctagGCTACATTGTTGGCTTCGTAGAATTGGAAGTGAGCAACAGACCAGACCTCTATGATGTATTTGTGAATTTAGCAGACAGTGAGATCACCATCGCTCCACTTGCGAAGAgtatcagctgtacccaacctaccgccccgcattcaccactaaatatttgt Alignment from Spaln_nt2Genome GCTACATTGCTGGCTTTGTAGAATTGGAGGTGAGCAACAGACCAGACCTCTATGACGTGTTTGTGAATCTGGCAGATAGTGAGATCACCATCGCTCCACTTGCAAAAG cttatccagtaatttggtcgactcagcaactttaatgctgctgtttctagGCTACATTGTTGGCTTCGTAGAATTGGAAGTGAGCAACAGACCAGACCTCTATGATGTATTTGTGAATTTAGCAGACAGTGAGATCACCATCGCTCCACTTGCGAAGAgtatcagctgtacccaacctaccgccccgcattcaccactaaatatttgt Alignment from Pairagon GCTACATTGCTGGCTTTGTAGAATTGGAGGTGAGCAACAGACCAGACCTCTATGACGTGTTTGTGAATCTGGCAGATAGTGAGATCACCATCGCTCCACTTGCAAAAG cttatccagtaatttggtcgactcagcaactttaatgctgctgtttctagGCTACATTGTTGGCTTCGTAGAATTGGAAGTGAGCAACAGACCAGACCTCTATGATGTATTTGTGAATTTAGCAGACAGTGAGATCACCATCGCTCCACTTGCGAAGAgtatcagctgtacccaacctaccgccccgcattcaccactaaatatttgt Alignment from Exonerate_protein2genome GCTACATTGCTGGCTTTGTAGAATTGGAGGTGAGCAACAGACCAGACCTCTATGACGTGTTTGTGAATCTGGCAGATAGTGAGATCACCATCGCTCCACTTGCAAAAG cttatccagtaatttggtcgactcagcaactttaatgctgctgtttctagGCTACATTGTTGGCTTCGTAGAATTGGAAGTGAGCAACAGACCAGACCTCTATGATGTATTTGTGAATTTAGCAGACAGTGAGATCACCATCGCTCCACTTGCGAAGAgtatcagctgtacccaacctaccgccccgcattcaccactaaatatttgt Alignment from Exonerate_coding2genome GCTACATTGCTGGCTTTGTAGAATTGGAGGTGAGCAACAGACCAGACCTCTATGACGTGTTTGTGAATCTGGCAGATAGTGAGATCACCATCGCTCCACTTGCAAAAG cttatccagtaatttggtcgactcagcaactttaatgctgctgtttctagGCTACATTGTTGGCTTCGTAGAATTGGAAGTGAGCAACAGACCAGACCTCTATGATGTATTTGTGAATTTAGCAGACAGTGAGATCACCATCGCTCCACTTGCGAAGAgtatcagctgtacccaacctaccgccccgcattcaccactaaatatttgt Alignment from GeneWise GCTACATTGCTGGCTTTGTAGAATTGGAGGTGAGCAACAGACCAGACCTCTATGACGTGTTTGTGAATCTGGCAGATAGTGAGATCACCATCGCTCCACTTGCAAAAG cttatccagtaatttggtcgactcagcaactttaatgctgctgtttctagGCTACATTGTTGGCTTCGTAGAATTGGAAGTGAGCAACAGACCAGACCTCTATGATGTATTTGTGAATTTAGCAGACAGTGAGATCACCATCGCTCCACTTGCGAAGAgtatcagctgtacccaacctaccgccccgcattcaccactaaatatttgt #### Fgf8_ID9565_4 --> 0 - 1 Original Alignment GTAACTGTTCAGTCCTCACCTAATTTTACACAGCATGTGAGGGAGCAGAGCCTGGTGACGGATCAGCTCAGCCGCCGCCTCATCCGGACCTACCAGCTCTACAGCCGCACCAGCGGGAAGCACGTGCAGGTCCTGGCCAACAAGCGCATCAACGCCATGGCAGAAGACGGAGACCCCTTCg tatcatcctggcttcaaacttctggcatctgcctcctttttttcctgcagGTCACTGTTCAGTCCTCACCTAATTTTACACAACATGTGAGGGAGCAGAGCCTGGTGACAGATCAGCTCAGCCGCCGCCTCATCCGCACTTACCAGCTCTACAGCCGCACAAGCGGGAAGCACGTGCAGGTCCTAGCTAACAAGCGCATCAACGCCATGGCAGAAGATGGGGACCCCTTCggtaatgtgcactaacatactgttacaaggttgacgccattttgactttaa Alignment from CESAR GTAACTGTTCAGTCCTCACCTAATTTTACACAGCATGTGAGGGAGCAGAGCCTGGTGACGGATCAGCTCAGCCGCCGCCTCATCCGGACCTACCAGCTCTACAGCCGCACCAGCGGGAAGCACGTGCAGGTCCTGGCCAACAAGCGCATCAACGCCATGGCAGAAGACGGAGACCCCTTCg tatcatcctggcttcaaacttctggcatctgcctcctttttttcctgcagGTCACTGTTCAGTCCTCACCTAATTTTACACAACATGTGAGGGAGCAGAGCCTGGTGACAGATCAGCTCAGCCGCCGCCTCATCCGCACTTACCAGCTCTACAGCCGCACAAGCGGGAAGCACGTGCAGGTCCTAGCTAACAAGCGCATCAACGCCATGGCAGAAGATGGGGACCCCTTCggtaatgtgcactaacatactgttacaaggttgacgccattttgactttaa Alignment from Spaln_aa2Genome GTAACTGTTCAGTCCTCACCTAATTTTACACAGCATGTGAGGGAGCAGAGCCTGGTGACGGATCAGCTCAGCCGCCGCCTCATCCGGACCTACCAGCTCTACAGCCGCACCAGCGGGAAGCACGTGCAGGTCCTGGCCAACAAGCGCATCAACGCCATGGCAGAAGACGGAGACCCCTTCG tatcatcctggcttcaaacttctggcatctgcctcctttttttcctgcagGTCACTGTTCAGTCCTCACCTAATTTTACACAACATGTGAGGGAGCAGAGCCTGGTGACAGATCAGCTCAGCCGCCGCCTCATCCGCACTTACCAGCTCTACAGCCGCACAAGCGGGAAGCACGTGCAGGTCCTAGCTAACAAGCGCATCAACGCCATGGCAGAAGATGGGGACCCCTTCGgtaatgtgcactaacatactgttacaaggttgacgccattttgactttaa Alignment from Spaln_nt2Genome GTAACTGTTCAGTCCTCACCTAATTTTACACAGCATGTGAGGGAGCAGAGCCTGGTGACGGATCAGCTCAGCCGCCGCCTCATCCGGACCTACCAGCTCTACAGCCGCACCAGCGGGAAGCACGTGCAGGTCCTGGCCAACAAGCGCATCAACGCCATGGCAGAAGACGGAGACCCCTTCG tatcatcctggcttcaaacttctggcatctgcctcctttttttcctgcagGTCACTGTTCAGTCCTCACCTAATTTTACACAACATGTGAGGGAGCAGAGCCTGGTGACAGATCAGCTCAGCCGCCGCCTCATCCGCACTTACCAGCTCTACAGCCGCACAAGCGGGAAGCACGTGCAGGTCCTAGCTAACAAGCGCATCAACGCCATGGCAGAAGATGGGGACCCCTTCGgtaatgtgcactaacatactgttacaaggttgacgccattttgactttaa Alignment from Pairagon GTAACTGTTCAGTCCTCACCTAATTTTACACAGCATGTGAGGGAGCAGAGCCTGGTGACGGATCAGCTCAGCCGCCGCCTCATCCGGACCTACCAGCTCTACAGCCGCACCAGCGGGAAGCACGTGCAGGTCCTGGCCAACAAGCGCATCAACGCCATGGCAGAAGACGGAGACCCCTTCG tatcatcctggcttcaaacttctggcatctgcctcctttttttcctgcagGTCACTGTTCAGTCCTCACCTAATTTTACACAACATGTGAGGGAGCAGAGCCTGGTGACAGATCAGCTCAGCCGCCGCCTCATCCGCACTTACCAGCTCTACAGCCGCACAAGCGGGAAGCACGTGCAGGTCCTAGCTAACAAGCGCATCAACGCCATGGCAGAAGATGGGGACCCCTTCGgtaatgtgcactaacatactgttacaaggttgacgccattttgactttaa Alignment from Exonerate_protein2genome GTAACTGTTCAGTCCTCACCTAATTTTACACAGCATGTGAGGGAGCAGAGCCTGGTGACGGATCAGCTCAGCCGCCGCCTCATCCGGACCTACCAGCTCTACAGCCGCACCAGCGGGAAGCACGTGCAGGTCCTGGCCAACAAGCGCATCAACGCCATGGCAGAAGACGGAGACCCCTTCG tatcatcctggcttcaaacttctggcatctgcctcctttttttcctgcagGTCACTGTTCAGTCCTCACCTAATTTTACACAACATGTGAGGGAGCAGAGCCTGGTGACAGATCAGCTCAGCCGCCGCCTCATCCGCACTTACCAGCTCTACAGCCGCACAAGCGGGAAGCACGTGCAGGTCCTAGCTAACAAGCGCATCAACGCCATGGCAGAAGATGGGGACCCCTTCGgtaatgtgcactaacatactgttacaaggttgacgccattttgactttaa Alignment from Exonerate_coding2genome GTAACTGTTCAGTCCTCACCTAATTTTACACAGCATGTGAGGGAGCAGAGCCTGGTGACGGATCAGCTCAGCCGCCGCCTCATCCGGACCTACCAGCTCTACAGCCGCACCAGCGGGAAGCACGTGCAGGTCCTGGCCAACAAGCGCATCAACGCCATGGCAGAAGACGGAGACCCCTTCG tatcatcctggcttcaaacttctggcatctgcctcctttttttcctgcagGTCACTGTTCAGTCCTCACCTAATTTTACACAACATGTGAGGGAGCAGAGCCTGGTGACAGATCAGCTCAGCCGCCGCCTCATCCGCACTTACCAGCTCTACAGCCGCACAAGCGGGAAGCACGTGCAGGTCCTAGCTAACAAGCGCATCAACGCCATGGCAGAAGATGGGGACCCCTTCGgtaatgtgcactaacatactgttacaaggttgacgccattttgactttaa Alignment from GeneWise GTAACTGTTCAGTCCTCACCTAATTTTACACAGCATGTGAGGGAGCAGAGCCTGGTGACGGATCAGCTCAGCCGCCGCCTCATCCGGACCTACCAGCTCTACAGCCGCACCAGCGGGAAGCACGTGCAGGTCCTGGCCAACAAGCGCATCAACGCCATGGCAGAAGACGGAGACCCCTTCG tatcatcctggcttcaaacttctggcatctgcctcctttttttcctgcagGTCACTGTTCAGTCCTCACCTAATTTTACACAACATGTGAGGGAGCAGAGCCTGGTGACAGATCAGCTCAGCCGCCGCCTCATCCGCACTTACCAGCTCTACAGCCGCACAAGCGGGAAGCACGTGCAGGTCCTAGCTAACAAGCGCATCAACGCCATGGCAGAAGATGGGGACCCCTTCGgtaatgtgcactaacatactgttacaaggttgacgccattttgactttaa #### Fgf8_ID9566_3 --> 0 - 0 Original Alignment GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG ggcatggcacggtcatgttgtggcatgggtttttattattttttttttagGGAGGCCCAGGAGGGGGGCCTGCGCTTGGCAGGGAGCCAACATCCCTGCTCCGAGCTGGTCGGGAACCTCAAGGTGTTTCCCAACAAgtaagcagttggagagttggagatggtttatccatttcaggccccgggtt Alignment from CESAR GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG ggcatggcacggtcatgttgtggcatgggtttttattattttttttttagGGAGGCCCAGGAGGGGGGCCTGCGCTTGGCAGGGAGCCAACATCCCTGCTCCGAGCTGGTCGGGAACCTCAAGGTGTTTCCCAACAAgtaagcagttggagagttggagatggtttatccatttcaggccccgggtt Alignment from Spaln_aa2Genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG ggcatggcacggtcatgttgtggcatgggtttttattattttttttttagGGAGGCCCAGGAGGGGGGCCTGCGCTTGGCAGGGAGCCAACATCCCTGCTCCGAGCTGGTCGGGAACCTCAAGGTGTTTCCCAACAAgtaagcagttggagagttggagatggtttatccatttcaggccccgggtt Alignment from Spaln_nt2Genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG ggcatggcacggtcatgttgtggcatgggtttttattattttttttttagGGAGGCCCAGGAGGGGGGCCTGCGCTTGGCAGGGAGCCAACATCCCTGCTCCGAGCTGGTCGGGAACCTCAAGGTGTTTCCCAACAAgtaagcagttggagagttggagatggtttatccatttcaggccccgggtt Alignment from Pairagon GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG ggcatggcacggtcatgttgtggcatgggtttttattattttttttttagGGAGGCCCAGGAGGGGGGCCTGCGCTTGGCAGGGAGCCAACATCCCTGCTCCGAGCTGGTCGGGAACCTCAAGGTGTTTCCCAACAAgtaagcagttggagagttggagatggtttatccatttcaggccccgggtt Alignment from Exonerate_protein2genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG ggcatggcacggtcatgttgtggcatgggtttttattattttttttttagGGAGGCCCAGGAGGGGGGCCTGCGCTTGGCAGGGAGCCAACATCCCTGCTCCGAGCTGGTCGGGAACCTCAAGGTGTTTCCCAACAAgtaagcagttggagagttggagatggtttatccatttcaggccccgggtt Alignment from Exonerate_coding2genome GGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG ggcatggcacggtcatgttgtggcatgggtttttattattttttttttagggaGGCCCAGGAGGGGGGCCTGCGCTTGGCAGGGAGCCAACATCCCTGCTCCGAGCTGGTCGGGAACCTCAAGGTGTTTCCCAACAAgtaagcagttggagagttggagatggtttatccatttcaggccccgggtt Alignment from GeneWise GGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG ggcatggcacggtcatgttgtggcatgggtttttattattttttttttagggaGGCCCAGGAGGGGGGCCTGCGCTTGGCAGGGAGCCAACATCCCTGCTCCGAGCTGGTCGGGAACCTCAAGGTGTTTCCCAACAAgtaagcagttggagagttggagatggtttatccatttcaggccccgggtt #### Fgf8_ID9567_2 --> 1 - 0 Original Alignment gCTGTTGCACTTGCTGGTTCTCTGCCTCCAAGCCCAG accgttctgctttttgggccacattttgtcatcatgatgttttctttcagaCTTTTACAATTGTTAGTTTTTTGCCTCCAGGCACAAgtgagcattgtacttaagcaatgagtggaaatcaggtggagtcaagacag Alignment from CESAR gCTGTTGCACTTGCTGGTTCTCTGCCTCCAAGCCCAG accgttctgctttttgggccacattttgtcatcatgatgttttctttcagaCTTTTACAATTGTTAGTTTTTTGCCTCCAGGCACAAgtgagcattgtacttaagcaatgagtggaaatcaggtggagtcaagacag Alignment from Spaln_aa2Genome GCTGTTGCACTTGCTGGTTCTCTGCCTCCAAGCCCAG accgttctgctttttgggccacattttgtcatcatgatgttttctttcagACTTTTACAATTGTTAGTTTTTTGCCTCCAGGCACAAgtgagcattgtacttaagcaatgagtggaaatcaggtggagtcaagacag Alignment from Spaln_nt2Genome GCTGTTGCACTTGCTGGTTCTCTGCCTCCAAGCCCAG accgttctgctttttgggccacattttgtcatcatgatgttttctttcagACTTTTACAATTGTTAGTTTTTTGCCTCCAGGCACAAgtgagcattgtacttaagcaatgagtggaaatcaggtggagtcaagacag Alignment from Pairagon GCTGTTGCACTTGCTGGTTCTCTGCCTCCAAGCCCAG accgttctgctttttgggccacattttgtcatcatgatgttttctttcagACTTTTACAATTGTTAGTTTTTTGCCTCCAGGCACAAgtgagcattgtacttaagcaatgagtggaaatcaggtggagtcaagacag Alignment from Exonerate_protein2genome GCTGTTGCACTTGCTGGTTCTCTGCCTCCAAGCCCAG accgttctgctttttgggccacattttgtcatcatgatgttttctttcagACTTTTACAATTGTTAGTTTTTTGCCTCCAGGCACAAgtgagcattgtacttaagcaatgagtggaaatcaggtggagtcaagacag Alignment from Exonerate_coding2genome accgttctgctttttgggccacattttgtcatcatgatgttttctttcagacttttacaattgttagttttttgcctccaggcacaagtgagcattgtacttaagcaatgagtggaaatcaggtggagtcaagacag Alignment from GeneWise accgttctgctttttgggccacattttgtcatcatgatgttttctttcagacttttacaattgttagttttttgcctccaggcacaagtgagcattgtacttaagcaatgagtggaaatcaggtggagtcaagacag #### Fkbp2_ID1947_2 --> 0 - 2 Original Alignment GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgg acaatctttcctcggcattgatggtctgatcaattgggattggtttgcagGGAAAGCTGGGAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGTTGGGACCAGGGTCTACTAgggtgagtttggcatataatctaagttgcagttgaatgctatagtaaaggtg Alignment from CESAR GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgg acaatctttcctcggcattgatggtctgatcaattgggattggtttgcagGGAAAGCTGGGAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGTTGGGACCAGGGTCTACTAgggtgagtttggcatataatctaagttgcagttgaatgctatagtaaaggtg Alignment from Spaln_aa2Genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG acaatctttcctcggcattgatggtctgatcaattgggattggtttgcagGGAAAGCTGGGAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGTTGGGACCAGGGTCTACTAGGgtgagtttggcatataatctaagttgcagttgaatgctatagtaaaggtg Alignment from Spaln_nt2Genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG acaatctttcctcggcattgatggtctgatcaattgggattggtttgcagGGAAAGCTGGGAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGTTGGGACCAGGGTCTACTAGGgtgagtttggcatataatctaagttgcagttgaatgctatagtaaaggtg Alignment from Pairagon GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG acaatctttcctcggcattgatggtctgatcaattgggattggtttgcagGGAAAGCTGGGAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGTTGGGACCAGGGTCTACTAGGgtgagtttggcatataatctaagttgcagttgaatgctatagtaaaggtg Alignment from Exonerate_protein2genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG acaatctttcctcggcattgatggtctgatcaattgggattggtttgcagGGAAAGCTGGGAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGTTGGGACCAGGGTCTACTAGGgtgagtttggcatataatctaagttgcagttgaatgctatagtaaaggtg Alignment from Exonerate_coding2genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG acaatctttcctcggcattgatggtctgatcaattgggattggtttgcagGGAAAGCTGGGAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGTTGGGACCAGGGTCTACTAGGgtgagtttggcatataatctaagttgcagttgaatgctatagtaaaggtg Alignment from GeneWise GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG acaatctttcctcggcattgatggtctgatcaattgggattggtttgcagGGAAAGCTGGGAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGTTGGGACCAGGGTCTACTAGGgtgagtttggcatataatctaagttgcagttgaatgctatagtaaaggtg #### Fosl1_ID1000_3 --> 0 - 0 Original Alignment ATCAGCCCAGAGGAGGAAGAGCGCCGCAGGGTGAGACGCGAGCGGAACAAGCTAGCAGCTGCTAAGTGCAGAAACCGAAGAAAGGAGCTGACAGACTTCCTGCAGGCG cctaaacaaggacccaacctcatagtcaaagactcattcttttctcctagGTCAGTCCAGAGCAGGAAGAGCGTCGTAGAGTAAGACGTGAGCAGAACAAGCTAGCGAGTGCTAAGTGCAGAAATCGCAGAAAGGAGCTGACAGACTTCTTGCAGGCAgtaagtgtataggttgaaactgcacaacagtggtcagacttaaattcccc Alignment from CESAR ATCAGCCCAGAGGAGGAAGAGCGCCGCAGGGTGAGACGCGAGCGGAACAAGCTAGCAGCTGCTAAGTGCAGAAACCGAAGAAAGGAGCTGACAGACTTCCTGCAGGCG cctaaacaaggacccaacctcatagtcaaagactcattcttttctcctagGTCAGTCCAGAGCAGGAAGAGCGTCGTAGAGTAAGACGTGAGCAGAACAAGCTAGCGAGTGCTAAGTGCAGAAATCGCAGAAAGGAGCTGACAGACTTCTTGCAGGCAgtaagtgtataggttgaaactgcacaacagtggtcagacttaaattcccc Alignment from Spaln_aa2Genome ATCAGCCCAGAGGAGGAAGAGCGCCGCAGGGTGAGACGCGAGCGGAACAAGCTAGCAGCTGCTAAGTGCAGAAACCGAAGAAAGGAGCTGACAGACTTCCTGCAGGCG cctaaacaaggacccaacctcatagtcaaagactcattcttttctcctagGTCAGTCCAGAGCAGGAAGAGCGTCGTAGAGTAAGACGTGAGCAGAACAAGCTAGCGAGTGCTAAGTGCAGAAATCGCAGAAAGGAGCTGACAGACTTCTTGCAGGCAgtaagtgtataggttgaaactgcacaacagtggtcagacttaaattcccc Alignment from Spaln_nt2Genome ATCAGCCCAGAGGAGGAAGAGCGCCGCAGGGTGAGACGCGAGCGGAACAAGCTAGCAGCTGCTAAGTGCAGAAACCGAAGAAAGGAGCTGACAGACTTCCTGCAGGCG cctaaacaaggacccaacctcatagtcaaagactcattcttttctcctagGTCAGTCCAGAGCAGGAAGAGCGTCGTAGAGTAAGACGTGAGCAGAACAAGCTAGCGAGTGCTAAGTGCAGAAATCGCAGAAAGGAGCTGACAGACTTCTTGCAGGCAgtaagtgtataggttgaaactgcacaacagtggtcagacttaaattcccc Alignment from Pairagon ATCAGCCCAGAGGAGGAAGAGCGCCGCAGGGTGAGACGCGAGCGGAACAAGCTAGCAGCTGCTAAGTGCAGAAACCGAAGAAAGGAGCTGACAGACTTCCTGCAGGCG cctaaacaaggacccaacctcatagtcaaagactcattcttttctcctagGTCAGTCCAGAGCAGGAAGAGCGTCGTAGAGTAAGACGTGAGCAGAACAAGCTAGCGAGTGCTAAGTGCAGAAATCGCAGAAAGGAGCTGACAGACTTCTTGCAGGCAgtaagtgtataggttgaaactgcacaacagtggtcagacttaaattcccc Alignment from Exonerate_protein2genome ATCAGCCCAGAGGAGGAAGAGCGCCGCAGGGTGAGACGCGAGCGGAACAAGCTAGCAGCTGCTAAGTGCAGAAACCGAAGAAAGGAGCTGACAGACTTCCTGCAGGCGGAG cctaaacaaggacccaacctcatagtcaaagactcattcttttctcctagGTCAGTCCAGAGCAGGAAGAGCGTCGTAGAGTAAGACGTGAGCAGAACAAGCTAGCGAGTGCTAAGTGCAGAAATCGCAGAAAGGAGCTGACAGACTTCTTGCAGGCA---gtaagtgtataggttgaaactgcacaacagtggtcagacttaaattc Alignment from Exonerate_coding2genome ATCAGCCCAGAGGAGGAAGAGCGCCGCAGGGTGAGACGCGAGCGGAACAAGCTAGCAGCTGCTAAGTGCAGAAACCGAAGAAAGGAGCTGACAGACTTCCTGCAGGCGGAG cctaaacaaggacccaacctcatagtcaaagactcattcttttctcctagGTCAGTCCAGAGCAGGAAGAGCGTCGTAGAGTAAGACGTGAGCAGAACAAGCTAGCGAGTGCTAAGTGCAGAAATCGCAGAAAGGAGCTGACAGACTTCTTGCAGGCA---gtaagtgtataggttgaaactgcacaacagtggtcagacttaaattc Alignment from GeneWise ATCAGCCCAGAGGAGGAAGAGCGCCGCAGGGTGAGACGCGAGCGGAACAAGCTAGCAGCTGCTAAGTGCAGAAACCGAAGAAAGGAGCTGACAGACTTCCTGCAGGCGGAGACC cctaaacaaggacccaacctcatagtcaaagactcattcttttctcctagGTCAGTCCAGAGCAGGAAGAGCGTCGTAGAGTAAGACGTGAGCAGAACAAGCTAGCGAGTGCTAAGTGCAGAAATCGCAGAAAGGAGCTGACAGACTTCTTGCAGGCAGTAAGTgtataggttgaaactgcacaacagtggtcagacttaaattcccc #### Fra10ac1_ID7559_10 --> 1 - 1 Original Alignment gAGAAAAGAAATCAAGTCAACAAAGAAAAAGTCTAAAACCACGCCTGAGTGTGACGAGTCACCTCGTAAGAAATCCAGATCGCCACCTTCAGAGGAAGCTTCCAAGGGGAAGGATGAAg acttgatgaggtacagttaacaacaatcgtcacacccctctcttcctcaggAGGCAAAAAATCAAATCAGCCAAGAAGACATCAAAGTCCACACCTGTCTGTGATGAAGTACCTTCTAAGAAATCACAATCACCACCATCAGAGGAAGCTTCCAAGGGCAAAGACGAAggtgagataacataagagtgaaaacaaacaatacagctactcctgcttcta Alignment from CESAR gAGAAAAGAAATCAAGTCAACAAAGAAAAAGTCTAAAACCACGCCTGAGTGTGACGAGTCACCTCGTAAGAAATCCAGATCGCCACCTTCAGAGGAAGCTTCCAAGGGGAAGGATGAAg acttgatgaggtacagttaacaacaatcgtcacacccctctcttcctcaggAGGCAAAAAATCAAATCAGCCAAGAAGACATCAAAGTCCACACCTGTCTGTGATGAAGTACCTTCTAAGAAATCACAATCACCACCATCAGAGGAAGCTTCCAAGGGCAAAGACGAAggtgagataacataagagtgaaaacaaacaatacagctactcctgcttcta Alignment from Spaln_aa2Genome GAGAAAAGAAATCAAGTCAACAAAGAAAAAGTCTAAAACCACGCCTGAGTGTGACGAGTCACCTCGTAAGAAATCCAGATCGCCACCTTCAGAGGAAGCTTCCAAGGGGAAGGATGAAG acttgatgaggtacagttaacaacaatcgtcacacccctctcttcctcagGAGGCAAAAAATCAAATCAGCCAAGAAGACATCAAAGTCCACACCTGTCTGTGATGAAGTACCTTCTAAGAAATCACAATCACCACCATCAGAGGAAGCTTCCAAGGGCAAAGACGAAGgtgagataacataagagtgaaaacaaacaatacagctactcctgcttcta Alignment from Spaln_nt2Genome GAGAAAAGAAATCAAGTCAACAAAGAAAAAGTCTAAAACCACGCCTGAGTGTGACGAGTCACCTCGTAAGAAATCCAGATCGCCACCTTCAGAGGAAGCTTCCAAGGGGAAGGATGAAG acttgatgaggtacagttaacaacaatcgtcacacccctctcttcctcagGAGGCAAAAAATCAAATCAGCCAAGAAGACATCAAAGTCCACACCTGTCTGTGATGAAGTACCTTCTAAGAAATCACAATCACCACCATCAGAGGAAGCTTCCAAGGGCAAAGACGAAGgtgagataacataagagtgaaaacaaacaatacagctactcctgcttcta Alignment from Pairagon GAGAAAAGAAATCAAGTCAACAAAGAAAAAGTCTAAAACCACGCCTGAGTGTGACGAGTCACCTCGTAAGAAATCCAGATCGCCACCTTCAGAGGAAGCTTCCAAGGGGAAGGATGAAG acttgatgaggtacagttaacaacaatcgtcacacccctctcttcctcagGAGGCAAAAAATCAAATCAGCCAAGAAGACATCAAAGTCCACACCTGTCTGTGATGAAGTACCTTCTAAGAAATCACAATCACCACCATCAGAGGAAGCTTCCAAGGGCAAAGACGAAGgtgagataacataagagtgaaaacaaacaatacagctactcctgcttcta Alignment from Exonerate_protein2genome GAGAAAAGAAATCAAGTCAACAAAGAAAAAGTCTAAAACCACGCCTGAGTGTGACGAGTCACCTCGTAAGAAATCCAGATCGCCACCTTCAGAGGAAGCTTCCAAGGGGAAGGATGAAG acttgatgaggtacagttaacaacaatcgtcacacccctctcttcctcagGAGGCAAAAAATCAAATCAGCCAAGAAGACATCAAAGTCCACACCTGTCTGTGATGAAGTACCTTCTAAGAAATCACAATCACCACCATCAGAGGAAGCTTCCAAGGGCAAAGACGAAGgtgagataacataagagtgaaaacaaacaatacagctactcctgcttcta Alignment from Exonerate_coding2genome GAGAAAAGAAATCAAGTCAACAAAGAAAAAGTCTAAAACCACGCCTGAGTGTGACGAGTCACCTCGTAAGAAATCCAGATCGCCACCTTCAGAGGAAGCTTCCAAGGGGAAGGATGAAG acttgatgaggtacagttaacaacaatcgtcacacccctctcttcctcagGAGGCAAAAAATCAAATCAGCCAAGAAGACATCAAAGTCCACACCTGTCTGTGATGAAGTACCTTCTAAGAAATCACAATCACCACCATCAGAGGAAGCTTCCAAGGGCAAAGACGAAGgtgagataacataagagtgaaaacaaacaatacagctactcctgcttcta Alignment from GeneWise GAGAAAAGAAATCAAGTCAACAAAGAAAAAGTCTAAAACCACGCCTGAGTGTGACGAGTCACCTCGTAAGAAATCCAGATCGCCACCTTCAGAGGAAGCTTCCAAGGGGAAGGATGAAG acttgatgaggtacagttaacaacaatcgtcacacccctctcttcctcagGAGGCAAAAAATCAAATCAGCCAAGAAGACATCAAAGTCCACACCTGTCTGTGATGAAGTACCTTCTAAGAAATCACAATCACCACCATCAGAGGAAGCTTCCAAGGGCAAAGACGAAGgtgagataacataagagtgaaaacaaacaatacagctactcctgcttcta #### Fra10ac1_ID7565_5 --> 1 - 2 Original Alignment gGAGAATGATAAGACAGATCTGGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGATGAAGCAGATATGACTtg atctggtaaaaccaaataagtctcagtgacgtgacccttctttgtttcaggGAGAATGATAAAACAGATCTTGATGTCATACATGAGAATCATAGGTTTCTTTGGAATGAGGAGGAGGAAGCAGATATGACAtggtgagcagacttgattatgtaatggcagcaaatgactctgttgctgtgaa Alignment from CESAR gGAGAATGATAAGACAGATCTGGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGATGAAGCAGATATGACTtg atctggtaaaaccaaataagtctcagtgacgtgacccttctttgtttcaggGAGAATGATAAAACAGATCTTGATGTCATACATGAGAATCATAGGTTTCTTTGGAATGAGGAGGAGGAAGCAGATATGACAtggtgagcagacttgattatgtaatggcagcaaatgactctgttgctgtgaa Alignment from Spaln_aa2Genome GGAGAATGATAAGACAGATCTGGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGATGAAGCAGATATGACTTG atctggtaaaaccaaataagtctcagtgacgtgacccttctttgtttcagGGAGAATGATAAAACAGATCTTGATGTCATACATGAGAATCATAGGTTTCTTTGGAATGAGGAGGAGGAAGCAGATATGACATGgtgagcagacttgattatgtaatggcagcaaatgactctgttgctgtgaa Alignment from Spaln_nt2Genome GGAGAATGATAAGACAGATCTGGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGATGAAGCAGATATGACTTG atctggtaaaaccaaataagtctcagtgacgtgacccttctttgtttcagGGAGAATGATAAAACAGATCTTGATGTCATACATGAGAATCATAGGTTTCTTTGGAATGAGGAGGAGGAAGCAGATATGACATGgtgagcagacttgattatgtaatggcagcaaatgactctgttgctgtgaa Alignment from Pairagon GGAGAATGATAAGACAGATCTGGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGATGAAGCAGATATGACTTG atctggtaaaaccaaataagtctcagtgacgtgacccttctttgtttcagGGAGAATGATAAAACAGATCTTGATGTCATACATGAGAATCATAGGTTTCTTTGGAATGAGGAGGAGGAAGCAGATATGACATGgtgagcagacttgattatgtaatggcagcaaatgactctgttgctgtgaa Alignment from Exonerate_protein2genome GGAGAATGATAAGACAGATCTGGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGATGAAGCAGATATGACTTG atctggtaaaaccaaataagtctcagtgacgtgacccttctttgtttcagGGAGAATGATAAAACAGATCTTGATGTCATACATGAGAATCATAGGTTTCTTTGGAATGAGGAGGAGGAAGCAGATATGACATGgtgagcagacttgattatgtaatggcagcaaatgactctgttgctgtgaa Alignment from Exonerate_coding2genome GGAGAATGATAAGACAGATCTGGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGATGAAGCAGATATGACTTG atctggtaaaaccaaataagtctcagtgacgtgacccttctttgtttcagGGAGAATGATAAAACAGATCTTGATGTCATACATGAGAATCATAGGTTTCTTTGGAATGAGGAGGAGGAAGCAGATATGACATGgtgagcagacttgattatgtaatggcagcaaatgactctgttgctgtgaa Alignment from GeneWise GGAGAATGATAAGACAGATCTGGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGATGAAGCAGATATGACTTG atctggtaaaaccaaataagtctcagtgacgtgacccttctttgtttcagGGAGAATGATAAAACAGATCTTGATGTCATACATGAGAATCATAGGTTTCTTTGGAATGAGGAGGAGGAAGCAGATATGACATGgtgagcagacttgattatgtaatggcagcaaatgactctgttgctgtgaa #### Frmd8_ID1284_4 --> 2 - 0 Original Alignment atGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG tatctttgaaggcttaggaaactatgaaatgatggccattctatcttcagatGAACCTTCCCTTCACTTCCGAAGGAACGTCTTTTTCCCCAGACAGCGTGAGCTCCAGgtgagtcaggacttatccaaggtcacactatttaagtatgtccatatttg Alignment from CESAR atGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG tatctttgaaggcttaggaaactatgaaatgatggccattctatcttcagatGAACCTTCCCTTCACTTCCGAAGGAACGTCTTTTTCCCCAGACAGCGTGAGCTCCAGgtgagtcaggacttatccaaggtcacactatttaagtatgtccatatttg Alignment from Spaln_aa2Genome ATGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG tatctttgaaggcttaggaaactatgaaatgatggccattctatcttcagATGAACCTTCCCTTCACTTCCGAAGGAACGTCTTTTTCCCCAGACAGCGTGAGCTCCAGgtgagtcaggacttatccaaggtcacactatttaagtatgtccatatttg Alignment from Spaln_nt2Genome ATGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG tatctttgaaggcttaggaaactatgaaatgatggccattctatcttcagATGAACCTTCCCTTCACTTCCGAAGGAACGTCTTTTTCCCCAGACAGCGTGAGCTCCAGgtgagtcaggacttatccaaggtcacactatttaagtatgtccatatttg Alignment from Pairagon ATGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG tatctttgaaggcttaggaaactatgaaatgatggccattctatcttcagATGAACCTTCCCTTCACTTCCGAAGGAACGTCTTTTTCCCCAGACAGCGTGAGCTCCAGgtgagtcaggacttatccaaggtcacactatttaagtatgtccatatttg Alignment from Exonerate_protein2genome ATGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG tatctttgaaggcttaggaaactatgaaatgatggccattctatcttcagATGAACCTTCCCTTCACTTCCGAAGGAACGTCTTTTTCCCCAGACAGCGTGAGCTCCAGgtgagtcaggacttatccaaggtcacactatttaagtatgtccatatttg Alignment from Exonerate_coding2genome GTCGCCATGGATGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG tatctttgaaggcttaggaaactatgaaatgatggccattCTATCTTCAGATGAACCTTCCCTTCACTTCCGAAGGAACGTCTTTTTCCCCAGACAGCGTGAGCTCCAGgtgagtcaggacttatccaaggtcacactatttaagtatgtccatatttg Alignment from GeneWise ATGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG tatctttgaaggcttaggaaactatgaaatgatggccattctatcttcagATGAACCTTCCCTTCACTTCCGAAGGAACGTCTTTTTCCCCAGACAGCGTGAGCTCCAGgtgagtcaggacttatccaaggtcacactatttaagtatgtccatatttg #### Fxn_ID5297_4 --> 0 - 2 Original Alignment GATGGCGTGCTCACCATTAAGCTGGGCGGGGATCTAGGGACCTACGTGATCAACAAGCAGACCCCAAACAAGCAAATCTGGCTGTCTTCTCCTTCCag acatcaaaataatgatttatctgcacataatgtctgtgttctgcttctagGATGGTGTCCTCACCATTAAGCTTGGTGGGGATCTAGGGACTTATGTGATCAATAAACATGCCCCAAACAAACAGATCTGGTTGTCTTCTCCCTCCaggtgcattcagagtccgaatttgctagtgtatgatagatgggtatacttaa Alignment from CESAR GATGGCGTGCTCACCATTAAGCTGGGCGGGGATCTAGGGACCTACGTGATCAACAAGCAGACCCCAAACAAGCAAATCTGGCTGTCTTCTCCTTCCag acatcaaaataatgatttatctgcacataatgtctgtgttctgcttctagGATGGTGTCCTCACCATTAAGCTTGGTGGGGATCTAGGGACTTATGTGATCAATAAACATGCCCCAAACAAACAGATCTGGTTGTCTTCTCCCTCCaggtgcattcagagtccgaatttgctagtgtatgatagatgggtatacttaa Alignment from Spaln_aa2Genome GATGGCGTGCTCACCATTAAGCTGGGCGGGGATCTAGGGACCTACGTGATCAACAAGCAGACCCCAAACAAGCAAATCTGGCTGTCTTCTCCTTCCAG acatcaaaataatgatttatctgcacataatgtctgtgttctgcttctagGATGGTGTCCTCACCATTAAGCTTGGTGGGGATCTAGGGACTTATGTGATCAATAAACATGCCCCAAACAAACAGATCTGGTTGTCTTCTCCCTCCAGgtgcattcagagtccgaatttgctagtgtatgatagatgggtatacttaa Alignment from Spaln_nt2Genome GATGGCGTGCTCACCATTAAGCTGGGCGGGGATCTAGGGACCTACGTGATCAACAAGCAGACCCCAAACAAGCAAATCTGGCTGTCTTCTCCTTCCAG acatcaaaataatgatttatctgcacataatgtctgtgttctgcttctagGATGGTGTCCTCACCATTAAGCTTGGTGGGGATCTAGGGACTTATGTGATCAATAAACATGCCCCAAACAAACAGATCTGGTTGTCTTCTCCCTCCAGgtgcattcagagtccgaatttgctagtgtatgatagatgggtatacttaa Alignment from Pairagon GATGGCGTGCTCACCATTAAGCTGGGCGGGGATCTAGGGACCTACGTGATCAACAAGCAGACCCCAAACAAGCAAATCTGGCTGTCTTCTCCTTCCAG acatcaaaataatgatttatctgcacataatgtctgtgttctgcttctagGATGGTGTCCTCACCATTAAGCTTGGTGGGGATCTAGGGACTTATGTGATCAATAAACATGCCCCAAACAAACAGATCTGGTTGTCTTCTCCCTCCAGgtgcattcagagtccgaatttgctagtgtatgatagatgggtatacttaa Alignment from Exonerate_protein2genome GATGGCGTGCTCACCATTAAGCTGGGCGGGGATCTAGGGACCTACGTGATCAACAAGCAGACCCCAAACAAGCAAATCTGGCTGTCTTCTCCTTCCAG acatcaaaataatgatttatctgcacataatgtctgtgttctgcttctagGATGGTGTCCTCACCATTAAGCTTGGTGGGGATCTAGGGACTTATGTGATCAATAAACATGCCCCAAACAAACAGATCTGGTTGTCTTCTCCCTCCAGgtgcattcagagtccgaatttgctagtgtatgatagatgggtatacttaa Alignment from Exonerate_coding2genome GATGGCGTGCTCACCATTAAGCTGGGCGGGGATCTAGGGACCTACGTGATCAACAAGCAGACCCCAAACAAGCAAATCTGGCTGTCTTCTCCTTCCAG acatcaaaataatgatttatctgcacataatgtctgtgttctgcttctagGATGGTGTCCTCACCATTAAGCTTGGTGGGGATCTAGGGACTTATGTGATCAATAAACATGCCCCAAACAAACAGATCTGGTTGTCTTCTCCCTCCAGgtgcattcagagtccgaatttgctagtgtatgatagatgggtatacttaa Alignment from GeneWise GATGGCGTGCTCACCATTAAGCTGGGCGGGGATCTAGGGACCTACGTGATCAACAAGCAGACCCCAAACAAGCAAATCTGGCTGTCTTCTCCTTCCAG acatcaaaataatgatttatctgcacataatgtctgtgttctgcttctagGATGGTGTCCTCACCATTAAGCTTGGTGGGGATCTAGGGACTTATGTGATCAATAAACATGCCCCAAACAAACAGATCTGGTTGTCTTCTCCCTCCAGgtgcattcagagtccgaatttgctagtgtatgatagatgggtatacttaa #### Fxn_ID5299_2 --> 0 - 2 Original Alignment CATTTGAACCTCCACTACCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCTGCGTGGTGCATTTGAGGAACTTGGGGACATTGGACAACCCAag caacagaagatatactagtttaaaaatttacggtccgtcttccacggcagCATTTAAACCTCCATTACCTACAGATATTAAACATTAAAAGGCAGAGTGTTTGTGTGGTGCATCTGAGGAACTTAGGTACATTGGATAATCCCaggtgagcaaaaatcattttactcatgcttcttaaggacatatgacctctct Alignment from CESAR CATTTGAACCTCCACTACCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCTGCGTGGTGCATTTGAGGAACTTGGGGACATTGGACAACCCAag caacagaagatatactagtttaaaaatttacggtccgtcttccacggcagCATTTAAACCTCCATTACCTACAGATATTAAACATTAAAAGGCAGAGTGTTTGTGTGGTGCATCTGAGGAACTTAGGTACATTGGATAATCCCaggtgagcaaaaatcattttactcatgcttcttaaggacatatgacctctct Alignment from Spaln_aa2Genome CATTTGAACCTCCACTACCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCTGCGTGGTGCATTTGAGGAACTTGGGGACATTGGACAACCCAAG caacagaagatatactagtttaaaaatttacggtccgtcttccacggcagCATTTAAACCTCCATTACCTACAGATATTAAACATTAAAAGGCAGAGTGTTTGTGTGGTGCATCTGAGGAACTTAGGTACATTGGATAATCCCAGgtgagcaaaaatcattttactcatgcttcttaaggacatatgacctctct Alignment from Spaln_nt2Genome CATTTGAACCTCCACTACCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCTGCGTGGTGCATTTGAGGAACTTGGGGACATTGGACAACCCAAG caacagaagatatactagtttaaaaatttacggtccgtcttccacggcagCATTTAAACCTCCATTACCTACAGATATTAAACATTAAAAGGCAGAGTGTTTGTGTGGTGCATCTGAGGAACTTAGGTACATTGGATAATCCCAGgtgagcaaaaatcattttactcatgcttcttaaggacatatgacctctct Alignment from Pairagon CATTTGAACCTCCACTACCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCTGCGTGGTGCATTTGAGGAACTTGGGGACATTGGACAACCCAAG caacagaagatatactagtttaaaaatttacggtccgtcttccacggcagCATTTAAACCTCCATTACCTACAGATATTAAACATTAAAAGGCAGAGTGTTTGTGTGGTGCATCTGAGGAACTTAGGTACATTGGATAATCCCAGgtgagcaaaaatcattttactcatgcttcttaaggacatatgacctctct Alignment from Exonerate_protein2genome CATTTGAACCTCCACTACCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCTGCGTGGTGCATTTGAGGAACTTGGGGACATTGGACAACCCAAG caacagaagatatactagtttaaaaatttacggtccgtcttccacggcagCATTTAAACCTCCATTACCTACAGATATTAAACATTAAAAGGCAGAGTGTTTGTGTGGTGCATCTGAGGAACTTAGGTACATTGGATAATCCCAGgtgagcaaaaatcattttactcatgcttcttaaggacatatgacctctct Alignment from Exonerate_coding2genome caacagaagatatactagtttaaaaatttacggtccgtcttccacggcagcatttaaacctccattacctacagatattaaacattaaaaggcagagtgtttgtgtggtgcatctgaggaacttaggtacattggataatcccaggtgagcaaaaatcattttactcatgcttcttaaggacatatgacctctct Alignment from GeneWise CATTTGAACCTCCACTACCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCTGCGTGGTGCATTTGAGGAACTTGGGGACATTGGACAACCCAAG caacagaagatatactagtttaaaaatttacggtccgtcttccacggcagCATTTAAACCTCCATTACCTACAGATATTAAACATTAAAAGGCAGAGTGTTTGTGTGGTGCATCTGAGGAACTTAGGTACATTGGATAATCCCAGgtgagcaaaaatcattttactcatgcttcttaaggacatatgacctctct #### Gal_ID63_3 --> 2 - 1 Original Alignment atGCCATTGACAACCACAGATCATTTAGCGACAAGCATGGCCTCACAGGCAAGAGGGAGTTACAACTGGAGGTGGAGGAAAGGAGACCAg tgattcctaagtgggtataataattggccttgatcctgtgtctttcctagatGCCATTGATAACCACAGATCATTTAGTGACAAACATGGCCTCAAAGGCAAGAGAGAATTGCAGTTGGAGGTAGAGGAGAGGAGACCAggtaatgcattgacacaaggccagtcttgtaagacataacctctactatgt Alignment from CESAR atGCCATTGACAACCACAGATCATTTAGCGACAAGCATGGCCTCACAGGCAAGAGGGAGTTACAACTGGAGGTGGAGGAAAGGAGACCAg tgattcctaagtgggtataataattggccttgatcctgtgtctttcctagatGCCATTGATAACCACAGATCATTTAGTGACAAACATGGCCTCAAAGGCAAGAGAGAATTGCAGTTGGAGGTAGAGGAGAGGAGACCAggtaatgcattgacacaaggccagtcttgtaagacataacctctactatgt Alignment from Spaln_aa2Genome ATGCCATTGACAACCACAGATCATTTAGCGACAAGCATGGCCTCACAGGCAAGAGGGAGTTACAACTGGAGGTGGAGGAAAGGAGACCAG tgattcctaagtgggtataataattggccttgatcctgtgtctttcctagATGCCATTGATAACCACAGATCATTTAGTGACAAACATGGCCTCAAAGGCAAGAGAGAATTGCAGTTGGAGGTAGAGGAGAGGAGACCAGgtaatgcattgacacaaggccagtcttgtaagacataacctctactatgt Alignment from Spaln_nt2Genome ATGCCATTGACAACCACAGATCATTTAGCGACAAGCATGGCCTCACAGGCAAGAGGGAGTTACAACTGGAGGTGGAGGAAAGGAGACCAG tgattcctaagtgggtataataattggccttgatcctgtgtctttcctagATGCCATTGATAACCACAGATCATTTAGTGACAAACATGGCCTCAAAGGCAAGAGAGAATTGCAGTTGGAGGTAGAGGAGAGGAGACCAGgtaatgcattgacacaaggccagtcttgtaagacataacctctactatgt Alignment from Pairagon ATGCCATTGACAACCACAGATCATTTAGCGACAAGCATGGCCTCACAGGCAAGAGGGAGTTACAACTGGAGGTGGAGGAAAGGAGACCAG tgattcctaagtgggtataataattggccttgatcctgtgtctttcctagATGCCATTGATAACCACAGATCATTTAGTGACAAACATGGCCTCAAAGGCAAGAGAGAATTGCAGTTGGAGGTAGAGGAGAGGAGACCAGgtaatgcattgacacaaggccagtcttgtaagacataacctctactatgt Alignment from Exonerate_protein2genome ATGCCATTGACAACCACAGATCATTTAGCGACAAGCATGGCCTCACAGGCAAGAGGGAGTTACAACTGGAGGTGGAGGAAAGGAGACCAG tgattcctaagtgggtataataattggccttgatcctgtgtctttcctagATGCCATTGATAACCACAGATCATTTAGTGACAAACATGGCCTCAAAGGCAAGAGAGAATTGCAGTTGGAGGTAGAGGAGAGGAGACCAGgtaatgcattgacacaaggccagtcttgtaagacataacctctactatgt Alignment from Exonerate_coding2genome ATGCCATTGACAACCACAGATCATTTAGCGACAAGCATGGCCTCACAGGCAAGAGGGAGTTACAACTGGAGGTGGAGGAAAGGAGACCAG tgattcctaagtgggtataataattggccttgatcctgtgtctttcctagATGCCATTGATAACCACAGATCATTTAGTGACAAACATGGCCTCAAAGGCAAGAGAGAATTGCAGTTGGAGGTAGAGGAGAGGAGACCAGgtaatgcattgacacaaggccagtcttgtaagacataacctctactatgt Alignment from GeneWise ATGCCATTGACAACCACAGATCATTTAGCGACAAGCATGGCCTCACAGGCAAGAGGGAGTTACAACTGGAGGTGGAGGAAAGGAGACCAG tgattcctaagtgggtataataattggccttgatcctgtgtctttcctagATGCCATTGATAACCACAGATCATTTAGTGACAAACATGGCCTCAAAGGCAAGAGAGAATTGCAGTTGGAGGTAGAGGAGAGGAGACCAGgtaatgcattgacacaaggccagtcttgtaagacataacctctactatgt #### Ganab_ID2465_4 --> 0 - 2 Original Alignment GTGCTGCTTGTGCTGGAGCTCCAGGGCCTTCAGAAGAACATGACTCGGATCAGGATCGATGAGCTAGAGCCCCGGCGGCCTCGATACCGAGTGCCAGATGTTTTAGTGGCTGACCCCCCCACAGCTag cctacaggagtattgtagagttcacttctccttcctcctctctcctgcagGTGCTTCTTGTGTTGGAACTTCAAGGCCTACAGAAGAACATGACCCGAAGCAGGATTGATGAGTTAAAACCCTGGCGACCTCAGTTCCAAGTGCCAGACCTGTTGGTTGCTGAGCCTCCACCACCCcggtgagatctccctcatctcgcttagctgcaacactctactttcccaaaat Alignment from CESAR GTGCTGCTTGTGCTGGAGCTCCAGGGCCTTCAGAAGAACATGACTCGGATCAGGATCGATGAGCTAGAGCCCCGGCGGCCTCGATACCGAGTGCCAGATGTTTTAGTGGCTGACCCCCCCACAGCTag cctacaggagtattgtagagttcacttctccttcctcctctctcctgcagGTGCTTCTTGTGTTGGAACTTCAAGGCCTACAGAAGAACATGACCCGAAGCAGGATTGATGAGTTAAAACCCTGGCGACCTCAGTTCCAAGTGCCAGACCTGTTGGTTGCTGAGCCTCCACCACCCcggtgagatctccctcatctcgcttagctgcaacactctactttcccaaaat Alignment from Spaln_aa2Genome GTGCTGCTTGTGCTGGAGCTCCAGGGCCTTCAGAAGAACATGACTCGGATCAGGATCGATGAGCTAGAGCCCCGGCGGCCTCGATACCGAGTGCCAGATGTTTTAGTGGCTGACCCCCCCACAGCTAG cctacaggagtattgtagagttcacttctccttcctcctctctcctgcagGTGCTTCTTGTGTTGGAACTTCAAGGCCTACAGAAGAACATGACCCGAAGCAGGATTGATGAGTTAAAACCCTGGCGACCTCAGTTCCAAGTGCCAGACCTGTTGGTTGCTGAGCCTCCACCACCCCGgtgagatctccctcatctcgcttagctgcaacactctactttcccaaaat Alignment from Spaln_nt2Genome GTGCTGCTTGTGCTGGAGCTCCAGGGCCTTCAGAAGAACATGACTCGGATCAGGATCGATGAGCTAGAGCCCCGGCGGCCTCGATACCGAGTGCCAGATGTTTTAGTGGCTGACCCCCCCACAGCTAG cctacaggagtattgtagagttcacttctccttcctcctctctcctgcagGTGCTTCTTGTGTTGGAACTTCAAGGCCTACAGAAGAACATGACCCGAAGCAGGATTGATGAGTTAAAACCCTGGCGACCTCAGTTCCAAGTGCCAGACCTGTTGGTTGCTGAGCCTCCACCACCCCGgtgagatctccctcatctcgcttagctgcaacactctactttcccaaaat Alignment from Pairagon GTGCTGCTTGTGCTGGAGCTCCAGGGCCTTCAGAAGAACATGACTCGGATCAGGATCGATGAGCTAGAGCCCCGGCGGCCTCGATACCGAGTGCCAGATGTTTTAGTGGCTGACCC-------CCCCA cctacaggagtattgtagagttcacttctccttcctcctctctcctgcagGTGCTTCTTGTGTTGGAACTTCAAGGCCTACAGAAGAACATGACCCGAAGCAGGATTGATGAGTTAAAACCCTGGCGACCTCAGTTCCAAGTGCCAGACCTGTTGGTTGCTGAGCCTCCACCACCCCGgtgagatctccctcatctcgcttagctgcaacactctactttcccaaaat Alignment from Exonerate_protein2genome GTGCTGCTTGTGCTGGAGCTCCAGGGCCTTCAGAAGAACATGACTCGGATCAGGATCGATGAGCTAGAGCCCCGGCGGCCTCGATACCGAGTGCCAGATGTTTTAGTGGCTGACCCCCCCACAGCTAG cctacaggagtattgtagagttcacttctccttcctcctctctcctgcagGTGCTTCTTGTGTTGGAACTTCAAGGCCTACAGAAGAACATGACCCGAAGCAGGATTGATGAGTTAAAACCCTGGCGACCTCAGTTCCAAGTGCCAGACCTGTTGGTTGCTGAGCCTCCACCACCCCGgtgagatctccctcatctcgcttagctgcaacactctactttcccaaaat Alignment from Exonerate_coding2genome GTGCTGCTTGTGCTGGAGCTCCAGGGCCTTCAGAAGAACATGACTCGGATCAGGATCGATGAGCTAGAGCCCCGGCGGCCTCGATACCGAGTGCCAGATGTTTTAGTGGCTGACCCCCCCACAGCTAG cctacaggagtattgtagagttcacttctccttcctcctctctcctgcagGTGCTTCTTGTGTTGGAACTTCAAGGCCTACAGAAGAACATGACCCGAAGCAGGATTGATGAGTTAAAACCCTGGCGACCTCAGTTCCAAGTGCCAGACCTGTTGGTTGCTGAGCCTCCACCACCCCGgtgagatctccctcatctcgcttagctgcaacactctactttcccaaaat Alignment from GeneWise GTGCTGCTTGTGCTGGAGCTCCAGGGCCTTCAGAAGAACATGACTCGGATCAGGATCGATGAGCTAGAGCCCCGGCGGCCTCGATACCGAGTGCCAGATGTTTTAGTGGCTGACCCCCCCACAGCTAG cctacaggagtattgtagagttcacttctccttcctcctctctcctgcagGTGCTTCTTGTGTTGGAACTTCAAGGCCTACAGAAGAACATGACCCGAAGCAGGATTGATGAGTTAAAACCCTGGCGACCTCAGTTCCAAGTGCCAGACCTGTTGGTTGCTGAGCCTCCACCACCCCGgtgagatctccctcatctcgcttagctgcaacactctactttcccaaaat #### Ganab_ID2466_5 --> 1 - 2 Original Alignment gCTTTCAGTCTCTGGCCGTGATGACAACAGTGTGGAGCTAACAGTGGCTGAGGGACCCTACAAAATCATTTTGACAGCACAGCCATTCCGCCTTGACCTGCTAGAAGATCGAAGCCTCCTGCTCAGTGTCAATGCCCGAGGACTTATGGCCTTTGAGCACCAGAGGGCCCCCAGGGTCcc ggatgattcaggaccatacatccagaaaatttatttgtcttttttcctaggCTTTCAGTCTCTGGCCATGGTGATAAGTCTGTTGAAATAACAGTTGCTGAGGGCCCCTATACAGTCATCTTGACTGCACAACCATTTCGTCTTGATCTGTTAGAGGATCAAACCCTACTACTCAGTGTCAAGCTCCAAGGACTCATGGCTTTAGAACATCAGAGAGACCCCAGAGTGccgtaagagcagtatcagtgttttaagggaacttactgtaaatgttgcgaat Alignment from CESAR gCTTTCAGTCTCTGGCCGTGATGACAACAGTGTGGAGCTAACAGTGGCTGAGGGACCCTACAAAATCATTTTGACAGCACAGCCATTCCGCCTTGACCTGCTAGAAGATCGAAGCCTCCTGCTCAGTGTCAATGCCCGAGGACTTATGGCCTTTGAGCACCAGAGGGCCCCCAGGGTCcc ggatgattcaggaccatacatccagaaaatttatttgtcttttttcctaggCTTTCAGTCTCTGGCCATGGTGATAAGTCTGTTGAAATAACAGTTGCTGAGGGCCCCTATACAGTCATCTTGACTGCACAACCATTTCGTCTTGATCTGTTAGAGGATCAAACCCTACTACTCAGTGTCAAGCTCCAAGGACTCATGGCTTTAGAACATCAGAGAGACCCCAGAGTGccgtaagagcagtatcagtgttttaagggaacttactgtaaatgttgcgaat Alignment from Spaln_aa2Genome GCTTTCAGTCTCTGGCCGTGATGACAACAGTGTGGAGCTAACAGTGGCTGAGGGACCCTACAAAATCATTTTGACAGCACAGCCATTCCGCCTTGACCTGCTAGAAGATCGAAGCCTCCTGCTCAGTGTCAATGCCCGAGGACTTATGGCCTTTGAGCACCAGAGGGCCCCCAGGGTCCC ggatgattcaggaccatacatccagaaaatttatttgtcttttttcctagGCTTTCAGTCTCTGGCCATGGTGATAAGTCTGTTGAAATAACAGTTGCTGAGGGCCCCTATACAGTCATCTTGACTGCACAACCATTTCGTCTTGATCTGTTAGAGGATCAAACCCTACTACTCAGTGTCAAGCTCCAAGGACTCATGGCTTTAGAACATCAGAGAGACCCCAGAGTGCCgtaagagcagtatcagtgttttaagggaacttactgtaaatgttgcgaat Alignment from Spaln_nt2Genome GCTTTCAGTCTCTGGCCGTGATGACAACAGTGTGGAGCTAACAGTGGCTGAGGGACCCTACAAAATCATTTTGACAGCACAGCCATTCCGCCTTGACCTGCTAGAAGATCGAAGCCTCCTGCTCAGTGTCAATGCCCGAGGACTTATGGCCTTTGAGCACCAGAGGGCCCCCAGGGTCCC ggatgattcaggaccatacatccagaaaatttatttgtcttttttcctagGCTTTCAGTCTCTGGCCATGGTGATAAGTCTGTTGAAATAACAGTTGCTGAGGGCCCCTATACAGTCATCTTGACTGCACAACCATTTCGTCTTGATCTGTTAGAGGATCAAACCCTACTACTCAGTGTCAAGCTCCAAGGACTCATGGCTTTAGAACATCAGAGAGACCCCAGAGTGCCgtaagagcagtatcagtgttttaagggaacttactgtaaatgttgcgaat Alignment from Pairagon GCTTTCAGTCTCTGGCCGTGATGACAACAGTGTGGAGCTAACAGTGGCTGAGGGACCCTACAAAATCATTTTGACAGCACAGCCATTCCGCCTTGACCTGCTAGAAGATCGAAGCCTCCTGCTCAGTGTCAATGCCCGAGGACTTATGGCCTTTGAGCACCAGAGGGCCCCCAGGGTCCC ggatgattcaggaccatacatccagaaaatttatttgtcttttttcctagGCTTTCAGTCTCTGGCCATGGTGATAAGTCTGTTGAAATAACAGTTGCTGAGGGCCCCTATACAGTCATCTTGACTGCACAACCATTTCGTCTTGATCTGTTAGAGGATCAAACCCTACTACTCAGTGTCAAGCTCCAAGGACTCATGGCTTTAGAACATCAGAGAGACCCCAGAGTGCCgtaagagcagtatcagtgttttaagggaacttactgtaaatgttgcgaat Alignment from Exonerate_protein2genome GCTTTCAGTCTCTGGCCGTGATGACAACAGTGTGGAGCTAACAGTGGCTGAGGGACCCTACAAAATCATTTTGACAGCACAGCCATTCCGCCTTGACCTGCTAGAAGATCGAAGCCTCCTGCTCAGTGTCAATGCCCGAGGACTTATGGCCTTTGAGCACCAGAGGGCCCCCAGGGTCCC ggatgattcaggaccatacatccagaaaatttatttgtcttttttcctagGCTTTCAGTCTCTGGCCATGGTGATAAGTCTGTTGAAATAACAGTTGCTGAGGGCCCCTATACAGTCATCTTGACTGCACAACCATTTCGTCTTGATCTGTTAGAGGATCAAACCCTACTACTCAGTGTCAAGCTCCAAGGACTCATGGCTTTAGAACATCAGAGAGACCCCAGAGTGCCgtaagagcagtatcagtgttttaagggaacttactgtaaatgttgcgaat Alignment from Exonerate_coding2genome GCTTTCAGTCTCTGGCCGTGATGACAACAGTGTGGAGCTAACAGTGGCTGAGGGACCCTACAAAATCATTTTGACAGCACAGCCATTCCGCCTTGACCTGCTAGAAGATCGAAGCCTCCTGCTCAGTGTCAATGCCCGAGGACTTATGGCCTTTGAGCACCAGAGGGCCCCCAGGGTCCC ggatgattcaggaccatacatccagaaaatttatttgtcttttttcctagGCTTTCAGTCTCTGGCCATGGTGATAAGTCTGTTGAAATAACAGTTGCTGAGGGCCCCTATACAGTCATCTTGACTGCACAACCATTTCGTCTTGATCTGTTAGAGGATCAAACCCTACTACTCAGTGTCAAGCTCCAAGGACTCATGGCTTTAGAACATCAGAGAGACCCCAGAGTGCCgtaagagcagtatcagtgttttaagggaacttactgtaaatgttgcgaat Alignment from GeneWise GCTTTCAGTCTCTGGCCGTGATGACAACAGTGTGGAGCTAACAGTGGCTGAGGGACCCTACAAAATCATTTTGACAGCACAGCCATTCCGCCTTGACCTGCTAGAAGATCGAAGCCTCCTGCTCAGTGTCAATGCCCGAGGACTTATGGCCTTTGAGCACCAGAGGGCCCCCAGGGTCCC ggatgattcaggaccatacatccagaaaatttatttgtcttttttcctagGCTTTCAGTCTCTGGCCATGGTGATAAGTCTGTTGAAATAACAGTTGCTGAGGGCCCCTATACAGTCATCTTGACTGCACAACCATTTCGTCTTGATCTGTTAGAGGATCAAACCCTACTACTCAGTGTCAAGCTCCAAGGACTCATGGCTTTAGAACATCAGAGAGACCCCAGAGTGCCgtaagagcagtatcagtgttttaagggaacttactgtaaatgttgcgaat #### Ganab_ID2467_6 --> 1 - 2 Original Alignment tTTCTCGGATAAAGTTAGTCTCGCGCTCGGTAGCGTGTGGGATAAGATCAAGAACCTTTTCTCTag tggtagtaagacaatggtgggatggaagctcccctttgctgactctgtagtTTCTCAGATAAAGTTAGCCTGACACTCGGCAGTGTGTGGGATAAGATCAAGAACCTTTTTTCCaggttagtgcctcattatatacctgttgctgttctgcactggccaccggcct Alignment from CESAR tTTCTCGGATAAAGTTAGTCTCGCGCTCGGTAGCGTGTGGGATAAGATCAAGAACCTTTTCTCTag tggtagtaagacaatggtgggatggaagctcccctttgctgactctgtagtTTCTCAGATAAAGTTAGCCTGACACTCGGCAGTGTGTGGGATAAGATCAAGAACCTTTTTTCCaggttagtgcctcattatatacctgttgctgttctgcactggccaccggcct Alignment from Spaln_aa2Genome TTTCTCGGATAAAGTTAGTCTCGCGCTCGGTAGCGTGTGGGATAAGATCAAGAACCTTTTCTCTAG tggtagtaagacaatggtgggatggaagctcccctttgctgactctgtagTTTCTCAGATAAAGTTAGCCTGACACTCGGCAGTGTGTGGGATAAGATCAAGAACCTTTTTTCCAGgttagtgcctcattatatacctgttgctgttctgcactggccaccggcct Alignment from Spaln_nt2Genome TTTCTCGGATAAAGTTAGTCTCGCGCTCGGTAGCGTGTGGGATAAGATCAAGAACCTTTTCTCTAG tggtagtaagacaatggtgggatggaagctcccctttgctgactctgtagTTTCTCAGATAAAGTTAGCCTGACACTCGGCAGTGTGTGGGATAAGATCAAGAACCTTTTTTCCAGgttagtgcctcattatatacctgttgctgttctgcactggccaccggcct Alignment from Pairagon TTTCTCGGATAAAGTTAGTCTCGCGCTCGGTAGCGTGTGGGATAAGATCAAGAACCTTTTCTCTAG tggtagtaagacaatggtgggatggaagctcccctttgctgactctgtagTTTCTCAGATAAAGTTAGCCTGACACTCGGCAGTGTGTGGGATAAGATCAAGAACCTTTTTTCCAGgttagtgcctcattatatacctgttgctgttctgcactggccaccggcct Alignment from Exonerate_protein2genome TTTCTCGGATAAAGTTAGTCTCGCGCTCGGTAGCGTGTGGGATAAGATCAAGAACCTTTTCTCTAG tggtagtaagacaatggtgggatggaagctcccctttgctgactctgtagTTTCTCAGATAAAGTTAGCCTGACACTCGGCAGTGTGTGGGATAAGATCAAGAACCTTTTTTCCAGgttagtgcctcattatatacctgttgctgttctgcactggccaccggcct Alignment from Exonerate_coding2genome TTTCTCGGATAAAGTTAGTCTCGCGCTCGGTAGCGTGTGGGATAAGATCAAGAACCTTTTCTCTAG tggtagtaagacaatggtgggatggaagctcccctttgctgactctgtagTTTCTCAGATAAAGTTAGCCTGACACTCGGCAGTGTGTGGGATAAGATCAAGAACCTTTTTTCCAGgttagtgcctcattatatacctgttgctgttctgcactggccaccggcct Alignment from GeneWise TTTCTCGGATAAAGTTAGTCTCGCGCTCGGTAGCGTGTGGGATAAGATCAAGAACCTTTTCTCTAG tggtagtaagacaatggtgggatggaagctcccctttgctgactctgtagTTTCTCAGATAAAGTTAGCCTGACACTCGGCAGTGTGTGGGATAAGATCAAGAACCTTTTTTCCAGgttagtgcctcattatatacctgttgctgttctgcactggccaccggcct #### Ganab_ID2470_9 --> 2 - 2 Original Alignment gcCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTga tggaacatgcatacggccttaatactaattttccttttttctcttttcaggtCCCATGTCTGTTGGTTTAGACTTTTCTCTGCCATGGATGGAACATGCATACGGGATCCCTGAACATGCTGACAGCTTAAGACTGAAGGTTACTgagtaagcccttgtgataacagtaacaacgaaagacctaattttcatgataa Alignment from CESAR gcCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTga tggaacatgcatacggccttaatactaattttccttttttctcttttcaggtCCCATGTCTGTTGGTTTAGACTTTTCTCTGCCATGGATGGAACATGCATACGGGATCCCTGAACATGCTGACAGCTTAAGACTGAAGGTTACTgagtaagcccttgtgataacagtaacaacgaaagacctaattttcatgataa Alignment from Spaln_aa2Genome GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA tggaacatgcatacggccttaatactaattttccttttttctcttttcagGTCCCATGTCTGTTGGTTTAGACTTTTCTCTGCCATGGATGGAACATGCATACGGGATCCCTGAACATGCTGACAGCTTAAGACTGAAGGTTACTGAgtaagcccttgtgataacagtaacaacgaaagacctaattttcatgataa Alignment from Spaln_nt2Genome GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA tggaacatgcatacggccttaatactaattttccttttttctcttttcagGTCCCATGTCTGTTGGTTTAGACTTTTCTCTGCCATGGATGGAACATGCATACGGGATCCCTGAACATGCTGACAGCTTAAGACTGAAGGTTACTGAgtaagcccttgtgataacagtaacaacgaaagacctaattttcatgataa Alignment from Pairagon GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA tggaacatgcatacggccttaatactaattttccttttttctcttttcagGTCCCATGTCTGTTGGTTTAGACTTTTCTCTGCCATGGATGGAACATGCATACGGGATCCCTGAACATGCTGACAGCTTAAGACTGAAGGTTACTGAgtaagcccttgtgataacagtaacaacgaaagacctaattttcatgataa Alignment from Exonerate_protein2genome GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA tggaacatgcatacggccttaatactaattttccttttttctcttttcagGTCCCATGTCTGTTGGTTTAGACTTTTCTCTGCCATGGATGGAACATGCATACGGGATCCCTGAACATGCTGACAGCTTAAGACTGAAGGTTACTGAgtaagcccttgtgataacagtaacaacgaaagacctaattttcatgataa Alignment from Exonerate_coding2genome GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA tggaacatgcatacggccttaatactaattttccttttttctcttttcagGTCCCATGTCTGTTGGTTTAGACTTTTCTCTGCCATGGATGGAACATGCATACGGGATCCCTGAACATGCTGACAGCTTAAGACTGAAGGTTACTGAgtaagcccttgtgataacagtaacaacgaaagacctaattttcatgataa Alignment from GeneWise GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA tggaacatgcatacggccttaatactaattttccttttttctcttttcagGTCCCATGTCTGTTGGTTTAGACTTTTCTCTGCCATGGATGGAACATGCATACGGGATCCCTGAACATGCTGACAGCTTAAGACTGAAGGTTACTGAgtaagcccttgtgataacagtaacaacgaaagacctaattttcatgataa #### Ganab_ID2471_10 --> 1 - 0 Original Alignment gGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG atttctttcggatgagaaatctgtatgtaacgccccatgtttccctgcagaGGTGGTGAGCCATATCGCTTGTACAATTTAGATGTATTGCAGTATGAGCTAAATAACCCAACAGCTCTCTATGGGTCCGTACCTGTC---CTGGCACACAGCTTTCATCGAGACCTGGGAATCTTCTGGCTCAATGCAGCTGAGACTTGGGTTGATATATCATCCAACACA------AAGgtaacacatgggtatgtgagacttggggtctgtcttagacatcccatcat Alignment from CESAR gGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG atttctttcggatgagaaatctgtatgtaacgccccatgtttccctgcagaGGTGGTGAGCCATATCGCTTGTACAATTTAGATGTATTGCAGTATGAGCTAAATAACCCAACAGCTCTCTATGGGTCCGTACCTGTC---CTGGCACACAGCTTTCATCGAGACCTGGGAATCTTCTGGCTCAATGCAGCTGAGACTTGGGTTGATATATCATCCAACACA------AAGgtaacacatgggtatgtgagacttggggtctgtcttagacatcccatcat Alignment from Spaln_aa2Genome GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG atttctttcggatgagaaatctgtatgtaacgccccatgtttccctgcagAGGTGGTGAGCCATATCGCTTGTACAATTTAGATGTATTGCAGTATGAGCTAAATAACCCAACAGCTCTCTATGGGTCCGTACCTGTC---CTGGCACACAGCTTTCATCGAGACCTGGGAATCTTCTGGCTCAATGCAGCTGAGACTTGGGTTGATATATCATCCAACACA------AAGgtaacacatgggtatgtgagacttggggtctgtcttagacatcccatcat Alignment from Spaln_nt2Genome GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG atttctttcggatgagaaatctgtatgtaacgccccatgtttccctgcagAGGTGGTGAGCCATATCGCTTGTACAATTTAGATGTATTGCAGTATGAGCTAAATAACCCAACAGCTCTCTATGGGTCCGTACCTG---TCCTGGCACACAGCTTTCATCGAGACCTGGGAATCTTCTGGCTCAATGCAGCTGAGACTTGGGTTGATATATCATCCAACAC------AAAGgtaacacatgggtatgtgagacttggggtctgtcttagacatcccatcat Alignment from Pairagon GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACAC-----------------------GGCTGGG------------------------ atttctttcggatgagaaatctgtatgtaacgccccatgtttccctgcagAGGTGGTGAGCCATATCGCTTGTACAATTTAGATGTATTGCAGTATGAGCTAAATAACCCAACAGCTCTCTATGGGTCCGTACCTG---TCCTGGCACACAGCTTTCATCGAGACCTGGGAATCTTCTGGCTCAATGCAGCTGAGACTTGGGTTGATATATCATCCAACACAAAGGTAACACATGGGTATGTGAGACTTGGGGTCTGTCTTAGACATCCCATCAT Alignment from Exonerate_protein2genome GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCT atttctttcggatgagaaatctgtatgtaacgccccatgtttccctgcagAGGTGGTGAGCCATATCGCTTGTACAATTTAGATGTATTGCAGTATGAGCTAAATAACCCAACAGCTCTCTATGGGTCCGTACCTGTC---CTGGCACACAGCTTTCATCGAGACCTGGGAATCTTCTGGCTCAATGCAGCTGAGACTTGGGTTGATATATCATCCAACACAAAGgtaacacatgggtatgtgagacttggggtctgtcttagacatcccatcat Alignment from Exonerate_coding2genome GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCT atttctttcggatgagaaatctgtatgtaacgccccatgtttccctgcagAGGTGGTGAGCCATATCGCTTGTACAATTTAGATGTATTGCAGTATGAGCTAAATAACCCAACAGCTCTCTATGGGTCCGTACCTGTC---CTGGCACACAGCTTTCATCGAGACCTGGGAATCTTCTGGCTCAATGCAGCTGAGACTTGGGTTGATATATCATCCAACACAAAGgtaacacatgggtatgtgagacttggggtctgtcttagacatcccatcat Alignment from GeneWise GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACG----------------------------------------------------- atttctttcggatgagaaatctgtatgtaacgccccatgtttccctgcagAGGTGGTGAGCCATATCGCTTGTACAATTTAGATGTATTGCAGTATGAGCTAAATAACCCAACAGCTCTCTATGGGTCCGTACCTGTCCTG---GCACACAGCTTTCATCGAGACCTGGGAATCTTCTGGCTCAATGCAGCTGAGACTTGGGTTGATATATCATCCAACACAAAGGTAACACATGGGTATGTGAGACTTGGGGTCTGTCTTAGACATCCCATCAT #### Ganab_ID2474_13 --> 0 - 1 Original Alignment CTGGTGGCCATTGTGGACCCCCACATCAAGGTA------GACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAg gc ggaagggcattgtaatctaaacaatttctctgtctgatgttgtcccccagCTAGTTGCTACTGTGGACCCACATATCAAGGTTAAAGTAGACTCTGGCTACCGGGTTCATGATGAGTTGCAA---------------ATCAAGACTCGGGATGGCTCTGATTATGAAGGCTGGTGTTGGCCAggtaagttctgtgatcaatgaagttttcagatggtaacctttttaccaggc Alignment from CESAR CTGGTGGCCATTGTGGACCCCCACATCAAG------GTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAg gc ggaagggcattgtaatctaaacaatttctctgtctgatgttgtcccccagCTAGTTGCTACTGTGGACCCACATATCAAGGTTAAAGTAGACTCTGGCTACCGGGTTCATGATGAGTTGCAA---------------ATCAAGACTCGGGATGGCTCTGATTATGAAGGCTGGTGTTGGCCAggtaagttctgtgatcaatgaagttttatatttattgctttttttctaggc Alignment from Spaln_aa2Genome CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG GC ggaagggcattgtaatctaaacaatttctctgtctgatgttgtcccccagCTAGTTGCTACTGTGGACCCACATATCAAGGTTAAAGTAGACTCTGGCTACCGGGTTCATGATGAGTTGCAA---------------ATCAAGACTCGGGATGGCTCTGATTATGAAGGCTGGTGTTGGCCAGgtaagttctgtgatcaatgaagttttcagatggtaacctttttaccagGC Alignment from Spaln_nt2Genome CTGGTGGCCATTGTGGACCCCCACATCAAGGT------AGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG GC ggaagggcattgtaatctaaacaatttctctgtctgatgttgtcccccagCTAGTTGCTACTGTGGACCCACATATCAAGGTTAAAGTAGACTCTGGCTACCGGGTTCATGATGAGTTGCAAA---------------TCAAGACTCGGGATGGCTCTGATTATGAAGGCTGGTGTTGGCCAGgtaagttctgtgatcaatgaagttttcagatggtaacctttttaccagGC Alignment from Pairagon CTGGTGGCCATTGTGGACCCCCACATCAAG------GTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG GC ggaagggcattgtaatctaaacaatttctctgtctgatgttgtcccccagCTAGTTGCTACTGTGGACCCACATATCAAGGTTAAAGTAGACTCTGGCTACCGGGTTCATGATGAGTTGCAAA---------------TCAAGACTCGGGATGGCTCTGATTATGAAGGCTGGTGTTGGCCAGgtaagttctgtgatcaatgaagttttcagatggtaacctttttaccagGC Alignment from Exonerate_protein2genome CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG GC ggaagggcattgtaatctaaacaatttctctgtctgatgttgtcccccagCTAGTTGCTACTGTGGACCCACATATCAAGGTTAAAGTAGACTCTGGCTACCGGGTTCATGATGAGTTGCAA---------------ATCAAGACTCGGGATGGCTCTGATTATGAAGGCTGGTGTTGGCCAGgtaagttctgtgatcaatgaagttttcagatggtaacctttttaccagGC Alignment from Exonerate_coding2genome CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG GC ggaagggcattgtaatctaaacaatttctctgtctgatgttgtcccccagCTAGTTGCTACTGTGGACCCACATATCAAGGTTAAAGTAGACTCTGGCTACCGGGTTCATGATGAGTTGCAA---------------ATCAAGACTCGGGATGGCTCTGATTATGAAGGCTGGTGTTGGCCAGgtaagttctgtgatcaatgaagttttcagatggtaacctttttaccagGC Alignment from GeneWise CTGGTGGCCATTGTGGACCCCCACATCAAGGTA------GACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG GC ggaagggcattgtaatctaaacaatttctctgtctgatgttgtcccccagCTAGTTGCTACTGTGGACCCACATATCAAGGTTAAAGTAGACTCTGGCTACCGGGTTCATGATGAGTTGCAA---------------ATCAAGACTCGGGATGGCTCTGATTATGAAGGCTGGTGTTGGCCAGgtaagttctgtgatcaatgaagttttcagatggtaacctttttaccagGC #### Ganab_ID2477_16 --> 0 - 1 Original Alignment CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTg accaggaagtaggttgtaggttttctttgaaatatctttttctactctagCATATGGCAACCACTGATGGGCTGATACAGTGTTCAGGGGGTGTTGAGCGTTCATTTGTGTTGAGTAGGTCTTTTTCCTCAGGTTTCCAGCGCTTTggtaagttgttgaaactagtgtcaaaactctagtcacttatggttaacctg Alignment from CESAR CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTg accaggaagtaggttgtaggttttctttgaaatatctttttctactctagCATATGGCAACCACTGATGGGCTGATACAGTGTTCAGGGGGTGTTGAGCGTTCATTTGTGTTGAGTAGGTCTTTTTCCTCAGGTTTCCAGCGCTTTggtaagttgttgaaactagtgtcaaaactctagtcacttatggttaacctg Alignment from Spaln_aa2Genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accaggaagtaggttgtaggttttctttgaaatatctttttctactctagCATATGGCAACCACTGATGGGCTGATACAGTGTTCAGGGGGTGTTGAGCGTTCATTTGTGTTGAGTAGGTCTTTTTCCTCAGGTTTCCAGCGCTTTGgtaagttgttgaaactagtgtcaaaactctagtcacttatggttaacctg Alignment from Spaln_nt2Genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accaggaagtaggttgtaggttttctttgaaatatctttttctactctagCATATGGCAACCACTGATGGGCTGATACAGTGTTCAGGGGGTGTTGAGCGTTCATTTGTGTTGAGTAGGTCTTTTTCCTCAGGTTTCCAGCGCTTTGgtaagttgttgaaactagtgtcaaaactctagtcacttatggttaacctg Alignment from Pairagon CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accaggaagtaggttgtaggttttctttgaaatatctttttctactctagCATATGGCAACCACTGATGGGCTGATACAGTGTTCAGGGGGTGTTGAGCGTTCATTTGTGTTGAGTAGGTCTTTTTCCTCAGGTTTCCAGCGCTTTGgtaagttgttgaaactagtgtcaaaactctagtcacttatggttaacctg Alignment from Exonerate_protein2genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accaggaagtaggttgtaggttttctttgaaatatctttttctactctagCATATGGCAACCACTGATGGGCTGATACAGTGTTCAGGGGGTGTTGAGCGTTCATTTGTGTTGAGTAGGTCTTTTTCCTCAGGTTTCCAGCGCTTTGgtaagttgttgaaactagtgtcaaaactctagtcacttatggttaacctg Alignment from Exonerate_coding2genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accaggaagtaggttgtaggttttctttgaaatatctttttctactctagCATATGGCAACCACTGATGGGCTGATACAGTGTTCAGGGGGTGTTGAGCGTTCATTTGTGTTGAGTAGGTCTTTTTCCTCAGGTTTCCAGCGCTTTGgtaagttgttgaaactagtgtcaaaactctagtcacttatggttaacctg Alignment from GeneWise CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accaggaagtaggttgtaggttttctttgaaatatctttttctactctagCATATGGCAACCACTGATGGGCTGATACAGTGTTCAGGGGGTGTTGAGCGTTCATTTGTGTTGAGTAGGTCTTTTTCCTCAGGTTTCCAGCGCTTTGgtaagttgttgaaactagtgtcaaaactctagtcacttatggttaacctg #### Ganab_ID2479_18 --> 2 - 2 Original Alignment cgGATGTGGGTGGCTTCTTCAAGAACCCAGAGCCAGAGCTGCTTGTGCGCTGGTACCAAATGGGTGCCTACCAGCCGTTCTTTCGGGCTCATGCCCACTTGGACACTGGGCGGCGAGAGCCATGGCTGTTAGCGTCTCAATACCAAGATGCAATCCGAGATGCCTTGTTCCAGCGATATTCTTTGCTGCCCTTCTGGTATACCCTCTTCTATCAAGCTCACAAGGAAGGGTTTCCTGTCATGag accagtactatggctgctttaaatagacaccatcttgttgttgttttcagcaGATGTAGGTGGGTCCTTTAGGAACCCAGAGCCGGAGTTACTTGTGCATTGGTACCAAATGGGTGCCTACCAGCCATTTTTTCGCGCTCATGCCCACTTGGACACTGGGCGACGAGAGCCATGGCTGTTAGCATCTCAGTACCAAGATGCAATCCGGGATGCCTTGTTCCAGCGGTATTCTTTACTGCCCTTCTGGTACACCCTATTCTATCAAGCTCACAAGGAAGGGTTTCCTGTCATGaggtgggtttcctcagtgtattgatgtagtgctgagtagtggaggactcaga Alignment from CESAR cgGATGTGGGTGGCTTCTTCAAGAACCCAGAGCCAGAGCTGCTTGTGCGCTGGTACCAAATGGGTGCCTACCAGCCGTTCTTTCGGGCTCATGCCCACTTGGACACTGGGCGGCGAGAGCCATGGCTGTTAGCGTCTCAATACCAAGATGCAATCCGAGATGCCTTGTTCCAGCGATATTCTTTGCTGCCCTTCTGGTATACCCTCTTCTATCAAGCTCACAAGGAAGGGTTTCCTGTCATGag accagtactatggctgctttaaatagacaccatcttgttgttgttttcagcaGATGTAGGTGGGTCCTTTAGGAACCCAGAGCCGGAGTTACTTGTGCATTGGTACCAAATGGGTGCCTACCAGCCATTTTTTCGCGCTCATGCCCACTTGGACACTGGGCGACGAGAGCCATGGCTGTTAGCATCTCAGTACCAAGATGCAATCCGGGATGCCTTGTTCCAGCGGTATTCTTTACTGCCCTTCTGGTACACCCTATTCTATCAAGCTCACAAGGAAGGGTTTCCTGTCATGaggtgggtttcctcagtgtattgatgtagtgctgagtagtggaggactcaga Alignment from Spaln_aa2Genome CGGATGTGGGTGGCTTCTTCAAGAACCCAGAGCCAGAGCTGCTTGTGCGCTGGTACCAAATGGGTGCCTACCAGCCGTTCTTTCGGGCTCATGCCCACTTGGACACTGGGCGGCGAGAGCCATGGCTGTTAGCGTCTCAATACCAAGATGCAATCCGAGATGCCTTGTTCCAGCGATATTCTTTGCTGCCCTTCTGGTATACCCTCTTCTATCAAGCTCACAAGGAAGGGTTTCCTGTCATGAG accagtactatggctgctttaaatagacaccatcttgttgttgttttcagCAGATGTAGGTGGGTCCTTTAGGAACCCAGAGCCGGAGTTACTTGTGCATTGGTACCAAATGGGTGCCTACCAGCCATTTTTTCGCGCTCATGCCCACTTGGACACTGGGCGACGAGAGCCATGGCTGTTAGCATCTCAGTACCAAGATGCAATCCGGGATGCCTTGTTCCAGCGGTATTCTTTACTGCCCTTCTGGTACACCCTATTCTATCAAGCTCACAAGGAAGGGTTTCCTGTCATGAGgtgggtttcctcagtgtattgatgtagtgctgagtagtggaggactcaga Alignment from Spaln_nt2Genome CGGATGTGGGTGGCTTCTTCAAGAACCCAGAGCCAGAGCTGCTTGTGCGCTGGTACCAAATGGGTGCCTACCAGCCGTTCTTTCGGGCTCATGCCCACTTGGACACTGGGCGGCGAGAGCCATGGCTGTTAGCGTCTCAATACCAAGATGCAATCCGAGATGCCTTGTTCCAGCGATATTCTTTGCTGCCCTTCTGGTATACCCTCTTCTATCAAGCTCACAAGGAAGGGTTTCCTGTCATGAG accagtactatggctgctttaaatagacaccatcttgttgttgttttcagCAGATGTAGGTGGGTCCTTTAGGAACCCAGAGCCGGAGTTACTTGTGCATTGGTACCAAATGGGTGCCTACCAGCCATTTTTTCGCGCTCATGCCCACTTGGACACTGGGCGACGAGAGCCATGGCTGTTAGCATCTCAGTACCAAGATGCAATCCGGGATGCCTTGTTCCAGCGGTATTCTTTACTGCCCTTCTGGTACACCCTATTCTATCAAGCTCACAAGGAAGGGTTTCCTGTCATGAGgtgggtttcctcagtgtattgatgtagtgctgagtagtggaggactcaga Alignment from Pairagon CGGATGTGGGTGGCTTCTTCAAGAACCCAGAGCCAGAGCTGCTTGTGCGCTGGTACCAAATGGGTGCCTACCAGCCGTTCTTTCGGGCTCATGCCCACTTGGACACTGGGCGGCGAGAGCCATGGCTGTTAGCGTCTCAATACCAAGATGCAATCCGAGATGCCTTGTTCCAGCGATATTCTTTGCTGCCCTTCTGGTATACCCTCTTCTATCAAGCTCACAAGGAAGGGTTTCCTGTCATGAG accagtactatggctgctttaaatagacaccatcttgttgttgttttcagCAGATGTAGGTGGGTCCTTTAGGAACCCAGAGCCGGAGTTACTTGTGCATTGGTACCAAATGGGTGCCTACCAGCCATTTTTTCGCGCTCATGCCCACTTGGACACTGGGCGACGAGAGCCATGGCTGTTAGCATCTCAGTACCAAGATGCAATCCGGGATGCCTTGTTCCAGCGGTATTCTTTACTGCCCTTCTGGTACACCCTATTCTATCAAGCTCACAAGGAAGGGTTTCCTGTCATGAGgtgggtttcctcagtgtattgatgtagtgctgagtagtggaggactcaga Alignment from Exonerate_protein2genome CGGATGTGGGTGGCTTCTTCAAGAACCCAGAGCCAGAGCTGCTTGTGCGCTGGTACCAAATGGGTGCCTACCAGCCGTTCTTTCGGGCTCATGCCCACTTGGACACTGGGCGGCGAGAGCCATGGCTGTTAGCGTCTCAATACCAAGATGCAATCCGAGATGCCTTGTTCCAGCGATATTCTTTGCTGCCCTTCTGGTATACCCTCTTCTATCAAGCTCACAAGGAAGGGTTTCCTGTCATGAG accagtactatggctgctttaaatagacaccatcttgttgttgttttcagCAGATGTAGGTGGGTCCTTTAGGAACCCAGAGCCGGAGTTACTTGTGCATTGGTACCAAATGGGTGCCTACCAGCCATTTTTTCGCGCTCATGCCCACTTGGACACTGGGCGACGAGAGCCATGGCTGTTAGCATCTCAGTACCAAGATGCAATCCGGGATGCCTTGTTCCAGCGGTATTCTTTACTGCCCTTCTGGTACACCCTATTCTATCAAGCTCACAAGGAAGGGTTTCCTGTCATGAGgtgggtttcctcagtgtattgatgtagtgctgagtagtggaggactcaga Alignment from Exonerate_coding2genome CGGATGTGGGTGGCTTCTTCAAGAACCCAGAGCCAGAGCTGCTTGTGCGCTGGTACCAAATGGGTGCCTACCAGCCGTTCTTTCGGGCTCATGCCCACTTGGACACTGGGCGGCGAGAGCCATGGCTGTTAGCGTCTCAATACCAAGATGCAATCCGAGATGCCTTGTTCCAGCGATATTCTTTGCTGCCCTTCTGGTATACCCTCTTCTATCAAGCTCACAAGGAAGGGTTTCCTGTCATGAG accagtactatggctgctttaaatagacaccatcttgttgttgttttcagCAGATGTAGGTGGGTCCTTTAGGAACCCAGAGCCGGAGTTACTTGTGCATTGGTACCAAATGGGTGCCTACCAGCCATTTTTTCGCGCTCATGCCCACTTGGACACTGGGCGACGAGAGCCATGGCTGTTAGCATCTCAGTACCAAGATGCAATCCGGGATGCCTTGTTCCAGCGGTATTCTTTACTGCCCTTCTGGTACACCCTATTCTATCAAGCTCACAAGGAAGGGTTTCCTGTCATGAGgtgggtttcctcagtgtattgatgtagtgctgagtagtggaggactcaga Alignment from GeneWise CGGATGTGGGTGGCTTCTTCAAGAACCCAGAGCCAGAGCTGCTTGTGCGCTGGTACCAAATGGGTGCCTACCAGCCGTTCTTTCGGGCTCATGCCCACTTGGACACTGGGCGGCGAGAGCCATGGCTGTTAGCGTCTCAATACCAAGATGCAATCCGAGATGCCTTGTTCCAGCGATATTCTTTGCTGCCCTTCTGGTATACCCTCTTCTATCAAGCTCACAAGGAAGGGTTTCCTGTCATGAG accagtactatggctgctttaaatagacaccatcttgttgttgttttcagCAGATGTAGGTGGGTCCTTTAGGAACCCAGAGCCGGAGTTACTTGTGCATTGGTACCAAATGGGTGCCTACCAGCCATTTTTTCGCGCTCATGCCCACTTGGACACTGGGCGACGAGAGCCATGGCTGTTAGCATCTCAGTACCAAGATGCAATCCGGGATGCCTTGTTCCAGCGGTATTCTTTACTGCCCTTCTGGTACACCCTATTCTATCAAGCTCACAAGGAAGGGTTTCCTGTCATGAGgtgggtttcctcagtgtattgatgtagtgctgagtagtggaggactcaga #### Ganab_ID2480_19 --> 1 - 1 Original Alignment gCCCCTCTGGGTACAGTATCCTGAGGATATGTCTACCTTCAGTATAGAGGATCAGTTCATGCTTg cattcattcaattctgctacaaacagtgtctcgggtcacactccacccaggCCACTCTGGGTACAGTATCCACAGGATACGTCTACCTTTAGCATAGAAGATCAGTTCATGGTTggtaagataagaccccaactaggaactaatcagggatcaggctgctcagat Alignment from CESAR gCCCCTCTGGGTACAGTATCCTGAGGATATGTCTACCTTCAGTATAGAGGATCAGTTCATGCTTg cattcattcaattctgctacaaacagtgtctcgggtcacactccacccaggCCACTCTGGGTACAGTATCCACAGGATACGTCTACCTTTAGCATAGAAGATCAGTTCATGGTTggtaagataagaccccaactaggaactaatcagggatcaggctgctcagat Alignment from Spaln_aa2Genome GCCCCTCTGGGTACAGTATCCTGAGGATATGTCTACCTTCAGTATAGAGGATCAGTTCATGCTTG cattcattcaattctgctacaaacagtgtctcgggtcacactccacccagGCCACTCTGGGTACAGTATCCACAGGATACGTCTACCTTTAGCATAGAAGATCAGTTCATGGTTGgtaagataagaccccaactaggaactaatcagggatcaggctgctcagat Alignment from Spaln_nt2Genome GCCCCTCTGGGTACAGTATCCTGAGGATATGTCTACCTTCAGTATAGAGGATCAGTTCATGCTTG cattcattcaattctgctacaaacagtgtctcgggtcacactccacccagGCCACTCTGGGTACAGTATCCACAGGATACGTCTACCTTTAGCATAGAAGATCAGTTCATGGTTGgtaagataagaccccaactaggaactaatcagggatcaggctgctcagat Alignment from Pairagon GCCCCTCTGGGTACAGTATCCTGAGGATATGTCTACCTTCAGTATAGAGGATCAGTTCATGCTTG cattcattcaattctgctacaaacagtgtctcgggtcacactccacccagGCCACTCTGGGTACAGTATCCACAGGATACGTCTACCTTTAGCATAGAAGATCAGTTCATGGTTGgtaagataagaccccaactaggaactaatcagggatcaggctgctcagat Alignment from Exonerate_protein2genome GCCCCTCTGGGTACAGTATCCTGAGGATATGTCTACCTTCAGTATAGAGGATCAGTTCATGCTTG cattcattcaattctgctacaaacagtgtctcgggtcacactccacccagGCCACTCTGGGTACAGTATCCACAGGATACGTCTACCTTTAGCATAGAAGATCAGTTCATGGTTGgtaagataagaccccaactaggaactaatcagggatcaggctgctcagat Alignment from Exonerate_coding2genome GCCCCTCTGGGTACAGTATCCTGAGGATATGTCTACCTTCAGTATAGAGGATCAGTTCATGCTTG cattcattcaattctgctacaaacagtgtctcgggtcacactccacccagGCCACTCTGGGTACAGTATCCACAGGATACGTCTACCTTTAGCATAGAAGATCAGTTCATGGTTGgtaagataagaccccaactaggaactaatcagggatcaggctgctcagat Alignment from GeneWise GCCCCTCTGGGTACAGTATCCTGAGGATATGTCTACCTTCAGTATAGAGGATCAGTTCATGCTTG cattcattcaattctgctacaaacagtgtctcgggtcacactccacccagGCCACTCTGGGTACAGTATCCACAGGATACGTCTACCTTTAGCATAGAAGATCAGTTCATGGTTGgtaagataagaccccaactaggaactaatcagggatcaggctgctcagat #### Ganab_ID2482_21 --> 0 - 0 Original Alignment GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT ggcaaatacataggtgccttaggagtgactctgggctttctttttcccagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCTTGTATCTACCAGTAACCTTGAGCAGCgtgagaatgagatttgtcagggtatccatgttcatttgtcaggattgaaa Alignment from CESAR GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT ggcaaatacataggtgccttaggagtgactctgggctttctttttcccagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCTTGTATCTACCAGTAACCTTGAGCAGCgtgagaatgagatttgtcagggtatccatgttcatttgtcaggattgaaa Alignment from Spaln_aa2Genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT ggcaaatacataggtgccttaggagtgactctgggctttctttttcccagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCTTGTATCTACCAGTAACCTTGAGCAGCgtgagaatgagatttgtcagggtatccatgttcatttgtcaggattgaaa Alignment from Spaln_nt2Genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT ggcaaatacataggtgccttaggagtgactctgggctttctttttcccagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCTTGTATCTACCAGTAACCTTGAGCAGCgtgagaatgagatttgtcagggtatccatgttcatttgtcaggattgaaa Alignment from Pairagon GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT ggcaaatacataggtgccttaggagtgactctgggctttctttttcccagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCTTGTATCTACCAGTAACCTTGAGCAGCgtgagaatgagatttgtcagggtatccatgttcatttgtcaggattgaaa Alignment from Exonerate_protein2genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT ggcaaatacataggtgccttaggagtgactctgggctttctttttcccagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCTTGTATCTACCAGTAACCTTGAGCAGCgtgagaatgagatttgtcagggtatccatgttcatttgtcaggattgaaa Alignment from Exonerate_coding2genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT ggcaaatacataggtgccttaggagtgactctgggctttctttttcccagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCTTGTATCTACCAGTAACCTTGAGCAGCgtgagaatgagatttgtcagggtatccatgttcatttgtcaggattgaaa Alignment from GeneWise --------------------------------------------------GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT GGCAAATACATAGGTGCCTTAGGAGTGACTCTGGGCTTTCTTTTTCCCAGGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCTTGTATCTACCAGTAACCTTGAGCAGCgtgagaatgagatttgtcagggtatccatgttcatttgtcaggattgaaa #### Ganab_ID2484_23 --> 0 - 2 Original Alignment GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTag aggtggacagaccacactgtttgttaggttatctcaaattcttctcctagGGTACTGCGCAGGGAGAGCTCTTCCTGGATGATGGCCACACCTTTAACTATCAGACTCGGCATGAGTTCCTGTTGCGGCGGTTTTCTTTTTCTGGCAGCACACTGGTATCTaggtaagacttatgccctgcctccagtttctgctatgtgtaaccattgcaaa Alignment from CESAR GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTag aggtggacagaccacactgtttgttaggttatctcaaattcttctcctagGGTACTGCGCAGGGAGAGCTCTTCCTGGATGATGGCCACACCTTTAACTATCAGACTCGGCATGAGTTCCTGTTGCGGCGGTTTTCTTTTTCTGGCAGCACACTGGTATCTaggtaagacttatgccctgcctccagtttctgctatgtgtttttgccttttt Alignment from Spaln_aa2Genome GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTAG aggtggacagaccacactgtttgttaggttatctcaaattcttctcctagGGTACTGCGCAGGGAGAGCTCTTCCTGGATGATGGCCACACCTTTAACTATCAGACTCGGCATGAGTTCCTGTTGCGGCGGTTTTCTTTTTCTGGCAGCACACTGGTATCTAGgtaagacttatgccctgcctccagtttctgctatgtgtaaccattgcaaa Alignment from Spaln_nt2Genome GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTAG aggtggacagaccacactgtttgttaggttatctcaaattcttctcctagGGTACTGCGCAGGGAGAGCTCTTCCTGGATGATGGCCACACCTTTAACTATCAGACTCGGCATGAGTTCCTGTTGCGGCGGTTTTCTTTTTCTGGCAGCACACTGGTATCTAGgtaagacttatgccctgcctccagtttctgctatgtgtaaccattgcaaa Alignment from Pairagon GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTAG aggtggacagaccacactgtttgttaggttatctcaaattcttctcctagGGTACTGCGCAGGGAGAGCTCTTCCTGGATGATGGCCACACCTTTAACTATCAGACTCGGCATGAGTTCCTGTTGCGGCGGTTTTCTTTTTCTGGCAGCACACTGGTATCTAGgtaagacttatgccctgcctccagtttctgctatgtgtaaccattgcaaa Alignment from Exonerate_protein2genome GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTAG aggtggacagaccacactgtttgttaggttatctcaaattcttctcctagGGTACTGCGCAGGGAGAGCTCTTCCTGGATGATGGCCACACCTTTAACTATCAGACTCGGCATGAGTTCCTGTTGCGGCGGTTTTCTTTTTCTGGCAGCACACTGGTATCTAGgtaagacttatgccctgcctccagtttctgctatgtgtaaccattgcaaa Alignment from Exonerate_coding2genome GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTAG aggtggacagaccacactgtttgttaggttatctcaaattcttctcctagGGTACTGCGCAGGGAGAGCTCTTCCTGGATGATGGCCACACCTTTAACTATCAGACTCGGCATGAGTTCCTGTTGCGGCGGTTTTCTTTTTCTGGCAGCACACTGGTATCTAGgtaagacttatgccctgcctccagtttctgctatgtgtaaccattgcaaa Alignment from GeneWise GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAGACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTAG aggtggacagaccacactgtttgttaggttatctcaaattcttctcctagGGTACTGCGCAGGGAGAGCTCTTCCTGGATGATGGCCACACCTTTAACTATCAGACTCGGCATGAGTTCCTGTTGCGGCGGTTTTCTTTTTCTGGCAGCACACTGGTATCTAGgtaagacttatgccctgcctccagtttctgctatgtgtaaccattgcaaa #### Gbf1_ID9758_2 --> 0 - 1 Original Alignment GATGAAGAACGGGATCCCCTTCTGCACAGTTTCAGTAACCTGAAAGAGGTCTTAAACAGTGTGACAg ctagcaatgtgatgaagtagcagtttttcactcctttaaaacacaactagGATGAAGAACGGGATCCCCTTCTGCACAGCTTCAGCAACCTGAAAGAAGTCTTAAACAGTGTGACAggtgcctcctggtaggaagtgtaacaagagggatgcctgaactcagcatta Alignment from CESAR GATGAAGAACGGGATCCCCTTCTGCACAGTTTCAGTAACCTGAAAGAGGTCTTAAACAGTGTGACAg ctagcaatgtgatgaagtagcagtttttcactcctttaaaacacaactagGATGAAGAACGGGATCCCCTTCTGCACAGCTTCAGCAACCTGAAAGAAGTCTTAAACAGTGTGACAggtgcctcctggtaggaagtgtaacaagagggatgcctgaactcagcatta Alignment from Spaln_aa2Genome GATGAAGAACGGGATCCCCTTCTGCACAGTTTCAGTAACCTGAAAGAGGTCTTAAACAGTGTGACAG ctagcaatgtgatgaagtagcagtttttcactcctttaaaacacaactagGATGAAGAACGGGATCCCCTTCTGCACAGCTTCAGCAACCTGAAAGAAGTCTTAAACAGTGTGACAGgtgcctcctggtaggaagtgtaacaagagggatgcctgaactcagcatta Alignment from Spaln_nt2Genome GATGAAGAACGGGATCCCCTTCTGCACAGTTTCAGTAACCTGAAAGAGGTCTTAAACAGTGTGACAG ctagcaatgtgatgaagtagcagtttttcactcctttaaaacacaactagGATGAAGAACGGGATCCCCTTCTGCACAGCTTCAGCAACCTGAAAGAAGTCTTAAACAGTGTGACAGgtgcctcctggtaggaagtgtaacaagagggatgcctgaactcagcatta Alignment from Pairagon GATGAAGAACGGGATCCCCTTCTGCACAGTTTCAGTAACCTGAAAGAGGTCTTAAACAGTGTGACAG ctagcaatgtgatgaagtagcagtttttcactcctttaaaacacaactagGATGAAGAACGGGATCCCCTTCTGCACAGCTTCAGCAACCTGAAAGAAGTCTTAAACAGTGTGACAGgtgcctcctggtaggaagtgtaacaagagggatgcctgaactcagcatta Alignment from Exonerate_protein2genome GATGAAGAACGGGATCCCCTTCTGCACAGTTTCAGTAACCTGAAAGAGGTCTTAAACAGTGTGACAG ctagcaatgtgatgaagtagcagtttttcactcctttaaaacacaactagGATGAAGAACGGGATCCCCTTCTGCACAGCTTCAGCAACCTGAAAGAAGTCTTAAACAGTGTGACAGgtgcctcctggtaggaagtgtaacaagagggatgcctgaactcagcatta Alignment from Exonerate_coding2genome GATGAAGAACGGGATCCCCTTCTGCACAGTTTCAGTAACCTGAAAGAGGTCTTAAACAGTGTGACAG ctagcaatgtgatgaagtagcagtttttcactcctttaaaacacaactagGATGAAGAACGGGATCCCCTTCTGCACAGCTTCAGCAACCTGAAAGAAGTCTTAAACAGTGTGACAGgtgcctcctggtaggaagtgtaacaagagggatgcctgaactcagcatta Alignment from GeneWise GATGAAGAACGGGATCCCCTTCTGCACAGTTTCAGTAACCTGAAAGAGGTCTTAAACAGTGTGACAG ctagcaatgtgatgaagtagcagtttttcactcctttaaaacacaactagGATGAAGAACGGGATCCCCTTCTGCACAGCTTCAGCAACCTGAAAGAAGTCTTAAACAGTGTGACAGgtgcctcctggtaggaagtgtaacaagagggatgcctgaactcagcatta #### Gbf1_ID9790_9 --> 2 - 0 Original Alignment gtGGTGTGCCCTTCATTGATGCACCCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGATAGTGGCCTGGAATTATCCTCCCAGACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGTGAGATGGGCGCTTCTGATCAGCTTGACCCTCAG tctctgctactaagtttactgcaaaaccgctgttgttcattgtctggcagggGGTGTGCCTTTCATTGATGCAACAACATCCATCTCCTCTGCAAGTGCTGAGACTGCCTCAACAGTAGTCAGCCCTTGCACAGACAGTGGCCTGGAGTTGTCTTCACAGACAACATCAAAGAAAGACCTCACAGACTTGGAACAGGCTGGTTCTCCAAGGGAGATTACCACAAGTGAGCCTGGAATTAGTGGTACAGGCAGTTCTGACCAACTTGACACTCAGgtagccctgattcatgaaagtgccttttcaaaattcggagtgtagatggt Alignment from CESAR gtGGTGTGCCCTTCATTGATGCACCCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGATAGTGGCCTGGAATTATCCTCCCAGACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGTGAGATGGGCGCTTCTGATCAGCTTGACCCTCAG tctctgctactaagtttactgcaaaaccgctgttgttcattgtctggcagggGGTGTGCCTTTCATTGATGCAACAACATCCATCTCCTCTGCAAGTGCTGAGACTGCCTCAACAGTAGTCAGCCCTTGCACAGACAGTGGCCTGGAGTTGTCTTCACAGACAACATCAAAGAAAGACCTCACAGACTTGGAACAGGCTGGTTCTCCAAGGGAGATTACCACAAGTGAGCCTGGAATTAGTGGTACAGGCAGTTCTGACCAACTTGACACTCAGgtagccctgattcatgaaagtgccttttcaaaattcggagtgtagatggt Alignment from Spaln_aa2Genome GTGGTGTGCCCTTCATTGATGCACCCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGATAGTGGCCTGGAATTATCCTCCCAGACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGTGAGATGGGCGCTTCTGATCAGCTTGACCCTCAG tctctgctactaagtttactgcaaaaccgctgttgttcattgtctggcagGGGGTGTGCCTTTCATTGATGCAACAACATCCATCTCCTCTGCAAGTGCTGAGACTGCCTCAACAGTAGTCAGCCCTTGCACAGACAGTGGCCTGGAGTTGTCTTCACAGACAACATCAAAGAAAGACCTCACAGACTTGGAACAGGCTGGTTCTCCAAGGGAGATTACCACAAGTGAGCCTGGAATTAGTGGTACAGGCAGTTCTGACCAACTTGACACTCAGgtagccctgattcatgaaagtgccttttcaaaattcggagtgtagatggt Alignment from Spaln_nt2Genome GTGGTGTGCCCTTCATTGATGCACCCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGATAGTGGCCTGGAATTATCCTCCCAGACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGTGAGATGGGCGCTTCTGATCAGCTTGACCCTCAG tctctgctactaagtttactgcaaaaccgctgttgttcattgtctggcagGGGGTGTGCCTTTCATTGATGCAACAACATCCATCTCCTCTGCAAGTGCTGAGACTGCCTCAACAGTAGTCAGCCCTTGCACAGACAGTGGCCTGGAGTTGTCTTCACAGACAACATCAAAGAAAGACCTCACAGACTTGGAACAGGCTGGTTCTCCAAGGGAGATTACCACAAGTGAGCCTGGAATTAGTGGTACAGGCAGTTCTGACCAACTTGACACTCAGgtagccctgattcatgaaagtgccttttcaaaattcggagtgtagatggt Alignment from Pairagon GTGGTGTGCCCTTCATTGATGCACCCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGATAGTGGCCTGGAATTATCCTCCCAGACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGTGAGATGGGCGCTTCTGATCAGCTTGACCCTCAG tctctgctactaagtttactgcaaaaccgctgttgttcattgtctggcagGGGGTGTGCCTTTCATTGATGCAACAACATCCATCTCCTCTGCAAGTGCTGAGACTGCCTCAACAGTAGTCAGCCCTTGCACAGACAGTGGCCTGGAGTTGTCTTCACAGACAACATCAAAGAAAGACCTCACAGACTTGGAACAGGCTGGTTCTCCAAGGGAGATTACCACAAGTGAGCCTGGAATTAGTGGTACAGGCAGTTCTGACCAACTTGACACTCAGgtagccctgattcatgaaagtgccttttcaaaattcggagtgtagatggt Alignment from Exonerate_protein2genome GTGGTGTGCCCTTCATTGATGCACCCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGATAGTGGCCTGGAATTATCCTCCCAGACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGTGAGATGGGCGCTTCTGATCAGCTTGACCCTCAG tctctgctactaagtttactgcaaaaccgctgttgttcattgtctggcagGGGGTGTGCCTTTCATTGATGCAACAACATCCATCTCCTCTGCAAGTGCTGAGACTGCCTCAACAGTAGTCAGCCCTTGCACAGACAGTGGCCTGGAGTTGTCTTCACAGACAACATCAAAGAAAGACCTCACAGACTTGGAACAGGCTGGTTCTCCAAGGGAGATTACCACAAGTGAGCCTGGAATTAGTGGTACAGGCAGTTCTGACCAACTTGACACTCAGgtagccctgattcatgaaagtgccttttcaaaattcggagtgtagatggt Alignment from Exonerate_coding2genome GTGGTGTGCCCTTCATTGATGCACCCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGATAGTGGCCTGGAATTATCCTCCCAGACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGTGAGATGGGCGCTTCTGATCAGCTTGACCCTCAG tctctgctactaagtttactgcaaaaccgctgttgttcattgtctggcagGGGGTGTGCCTTTCATTGATGCAACAACATCCATCTCCTCTGCAAGTGCTGAGACTGCCTCAACAGTAGTCAGCCCTTGCACAGACAGTGGCCTGGAGTTGTCTTCACAGACAACATCAAAGAAAGACCTCACAGACTTGGAACAGGCTGGTTCTCCAAGGGAGATTACCACAAGTGAGCCTGGAATTAGTGGTACAGGCAGTTCTGACCAACTTGACACTCAGgtagccctgattcatgaaagtgccttttcaaaattcggagtgtagatggt Alignment from GeneWise GTGGTGTGCCCTTCATTGATGCACCCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGATAGTGGCCTGGAATTATCCTCCCAGACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGTGAGATGGGCGCTTCTGATCAGCTTGACCCTCAG tctctgctactaagtttactgcaaaaccgctgttgttcattgtctggcagGGGGTGTGCCTTTCATTGATGCAACAACATCCATCTCCTCTGCAAGTGCTGAGACTGCCTCAACAGTAGTCAGCCCTTGCACAGACAGTGGCCTGGAGTTGTCTTCACAGACAACATCAAAGAAAGACCTCACAGACTTGGAACAGGCTGGTTCTCCAAGGGAGATTACCACAAGTGAGCCTGGAATTAGTGGTACAGGCAGTTCTGACCAACTTGACACTCAGgtagccctgattcatgaaagtgccttttcaaaattcggagtgtagatggt #### Gbf1_ID9794_13 --> 0 - 0 Original Alignment ATGTACATCAAAAAGCTCATGGAGATCATCACTGTTGAAAACCCCAAGATGCCTTATGAGATGAAGGAGATGGCGCTGGAGGCCGTTGTTCAGCTCTGGCGTATCCCCAGCTTCGTCACTGAGCTCTACATCAACTATGATTGTGACTACTATTGCTCCAACCTCTTTGAAGACCTCACCAAGCTGCTGTCCAAG ttgcagaaagagcaccatccaagtcgagtcctatgcctctctctcctcagATGTATATCAAAAGGCTGATGGACATTATCACCATAGAAAACCCCAAAATGCCTTATGAGATGAAAGAGATGTCTCTAGATGCTGTTATTTGGCTCTGGCGTATACCCAGCTCTGTCACTGAGATTTACATCAACTATGAATGTGACTATTATTGTTCAAATCTCTTA---GACCTCATCCAGTTACTTTCCAAAgtaagacttaccccacttgacagtatacaggtcacatagcctctacccca Alignment from CESAR ATGTACATCAAAAAGCTCATGGAGATCATCACTGTTGAAAACCCCAAGATGCCTTATGAGATGAAGGAGATGGCGCTGGAGGCCGTTGTTCAGCTCTGGCGTATCCCCAGCTTCGTCACTGAGCTCTACATCAACTATGATTGTGACTACTATTGCTCCAACCTCTTTGAAGACCTCACCAAGCTGCTGTCCAAG ttgcagaaagagcaccatccaagtcgagtcctatgcctctctctcctcagATGTATATCAAAAGGCTGATGGACATTATCACCATAGAAAACCCCAAAATGCCTTATGAGATGAAAGAGATGTCTCTAGATGCTGTTATTTGGCTCTGGCGTATACCCAGCTCTGTCACTGAGATTTACATCAACTATGAATGTGACTATTATTGTTCAAATCTCTTA---GACCTCATCCAGTTACTTTCCAAAgtaagacttaccccacttgacagtatacaggtcacatagcagcctgttgt Alignment from Spaln_aa2Genome ATGTACATCAAAAAGCTCATGGAGATCATCACTGTTGAAAACCCCAAGATGCCTTATGAGATGAAGGAGATGGCGCTGGAGGCCGTTGTTCAGCTCTGGCGTATCCCCAGCTTCGTCACTGAGCTCTACATCAACTATGATTGTGACTACTATTGCTCCAACCTCTTTGAAGACCTCACCAAGCTGCTGTCCAAG ttgcagaaagagcaccatccaagtcgagtcctatgcctctctctcctcagATGTATATCAAAAGGCTGATGGACATTATCACCATAGAAAACCCCAAAATGCCTTATGAGATGAAAGAGATGTCTCTAGATGCTGTTATTTGGCTCTGGCGTATACCCAGCTCTGTCACTGAGATTTACATCAACTATGAATGTGACTATTATTGTTCAAATCTCTTA---GACCTCATCCAGTTACTTTCCAAAgtaagacttaccccacttgacagtatacaggtcacatagcctctacccca Alignment from Spaln_nt2Genome ATGTACATCAAAAAGCTCATGGAGATCATCACTGTTGAAAACCCCAAGATGCCTTATGAGATGAAGGAGATGGCGCTGGAGGCCGTTGTTCAGCTCTGGCGTATCCCCAGCTTCGTCACTGAGCTCTACATCAACTATGATTGTGACTACTATTGCTCCAACCTCTTTGAAGACCTCACCAAGCTGCTGTCCAAG ttgcagaaagagcaccatccaagtcgagtcctatgcctctctctcctcagATGTATATCAAAAGGCTGATGGACATTATCACCATAGAAAACCCCAAAATGCCTTATGAGATGAAAGAGATGTCTCTAGATGCTGTTATTTGGCTCTGGCGTATACCCAGCTCTGTCACTGAGATTTACATCAACTATGAATGTGACTATTATTGTTCAAATCTCTT---AGACCTCATCCAGTTACTTTCCAAAgtaagacttaccccacttgacagtatacaggtcacatagcctctacccca Alignment from Pairagon ATGTACATCAAAAAGCTCATGGAGATCATCACTGTTGAAAACCCCAAGATGCCTTATGAGATGAAGGAGATGGCGCTGGAGGCCGTTGTTCAGCTCTGGCGTATCCCCAGCTTCGTCACTGAGCTCTACATCAACTATGATTGTGACTACTATTGCTCCAACCTCTTTGAAGACCTCACCAAGCTGCTGTCCAAG ttgcagaaagagcaccatccaagtcgagtcctatgcctctctctcctcagATGTATATCAAAAGGCTGATGGACATTATCACCATAGAAAACCCCAAAATGCCTTATGAGATGAAAGAGATGTCTCTAGATGCTGTTATTTGGCTCTGGCGTATACCCAGCTCTGTCACTGAGATTTACATCAACTATGAATGTGACTATTATTGTTCAAATCTCTT---AGACCTCATCCAGTTACTTTCCAAAgtaagacttaccccacttgacagtatacaggtcacatagcctctacccca Alignment from Exonerate_protein2genome ATGTACATCAAAAAGCTCATGGAGATCATCACTGTTGAAAACCCCAAGATGCCTTATGAGATGAAGGAGATGGCGCTGGAGGCCGTTGTTCAGCTCTGGCGTATCCCCAGCTTCGTCACTGAGCTCTACATCAACTATGATTGTGACTACTATTGCTCCAACCTCTTTGAAGACCTCACCAAGCTGCTGTCCAAG ttgcagaaagagcaccatccaagtcgagtcctatgcctctctctcctcagATGTATATCAAAAGGCTGATGGACATTATCACCATAGAAAACCCCAAAATGCCTTATGAGATGAAAGAGATGTCTCTAGATGCTGTTATTTGGCTCTGGCGTATACCCAGCTCTGTCACTGAGATTTACATCAACTATGAATGTGACTATTATTGTTCAAATCTCTTA---GACCTCATCCAGTTACTTTCCAAAgtaagacttaccccacttgacagtatacaggtcacatagcctctacccca Alignment from Exonerate_coding2genome ATGTACATCAAAAAGCTCATGGAGATCATCACTGTTGAAAACCCCAAGATGCCTTATGAGATGAAGGAGATGGCGCTGGAGGCCGTTGTTCAGCTCTGGCGTATCCCCAGCTTCGTCACTGAGCTCTACATCAACTATGATTGTGACTACTATTGCTCCAACCTCTTTGAAGACCTCACCAAGCTGCTGTCCAAG ttgcagaaagagcaccatccaagtcgagtcctatgcctctctctcctcagATGTATATCAAAAGGCTGATGGACATTATCACCATAGAAAACCCCAAAATGCCTTATGAGATGAAAGAGATGTCTCTAGATGCTGTTATTTGGCTCTGGCGTATACCCAGCTCTGTCACTGAGATTTACATCAACTATGAATGTGACTATTATTGTTCAAATCTCTTA---GACCTCATCCAGTTACTTTCCAAAgtaagacttaccccacttgacagtatacaggtcacatagcctctacccca Alignment from GeneWise ATGTACATCAAAAAGCTCATGGAGATCATCACTGTTGAAAACCCCAAGATGCCTTATGAGATGAAGGAGATGGCGCTGGAGGCCGTTGTTCAGCTCTGGCGTATCCCCAGCTTCGTCACTGAGCTCTACATCAACTATGATTGTGACTACTATTGCTCCAACCTCTTTGAAGACCTCACCAAGCTGCTGTCCAAG ttgcagaaagagcaccatccaagtcgagtcctatgcctctctctcctcagATGTATATCAAAAGGCTGATGGACATTATCACCATAGAAAACCCCAAAATGCCTTATGAGATGAAAGAGATGTCTCTAGATGCTGTTATTTGGCTCTGGCGTATACCCAGCTCTGTCACTGAGATTTACATCAACTATGAATGTGACTATTATTGTTCAAATCTCTTA---GACCTCATCCAGTTACTTTCCAAAgtaagacttaccccacttgacagtatacaggtcacatagcctctacccca #### Gbf1_ID9799_18 --> 1 - 0 Original Alignment cACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG agtttccttgtctgaaaactctgcaagtagctgtcttcctgtgcccacagtACCTTCAGCTTTCAAGGTCTGCGGCTTGACGAGGCTCTTCGACTCTACCTTGAAGCCTTCCGTTTGCCTGGGGAAGCCCCACTTATTCACAGGTTGCTGGAAGTTTTCACTGAGCATTGGAGGgtgagtcctgttagaagatgtgaattgggtataggaatcactgcagtacc Alignment from CESAR cACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG agtttccttgtctgaaaactctgcaagtagctgtcttcctgtgcccacagtACCTTCAGCTTTCAAGGTCTGCGGCTTGACGAGGCTCTTCGACTCTACCTTGAAGCCTTCCGTTTGCCTGGGGAAGCCCCACTTATTCACAGGTTGCTGGAAGTTTTCACTGAGCATTGGAGGgtgagtcctgttagaagatgtgaattgggtataggaatcactgcagtacc Alignment from Spaln_aa2Genome CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG agtttccttgtctgaaaactctgcaagtagctgtcttcctgtgcccacagTACCTTCAGCTTTCAAGGTCTGCGGCTTGACGAGGCTCTTCGACTCTACCTTGAAGCCTTCCGTTTGCCTGGGGAAGCCCCACTTATTCACAGGTTGCTGGAAGTTTTCACTGAGCATTGGAGGgtgagtcctgttagaagatgtgaattgggtataggaatcactgcagtacc Alignment from Spaln_nt2Genome CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG agtttccttgtctgaaaactctgcaagtagctgtcttcctgtgcccacagTACCTTCAGCTTTCAAGGTCTGCGGCTTGACGAGGCTCTTCGACTCTACCTTGAAGCCTTCCGTTTGCCTGGGGAAGCCCCACTTATTCACAGGTTGCTGGAAGTTTTCACTGAGCATTGGAGGgtgagtcctgttagaagatgtgaattgggtataggaatcactgcagtacc Alignment from Pairagon CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG agtttccttgtctgaaaactctgcaagtagctgtcttcctgtgcccacagTACCTTCAGCTTTCAAGGTCTGCGGCTTGACGAGGCTCTTCGACTCTACCTTGAAGCCTTCCGTTTGCCTGGGGAAGCCCCACTTATTCACAGGTTGCTGGAAGTTTTCACTGAGCATTGGAGGgtgagtcctgttagaagatgtgaattgggtataggaatcactgcagtacc Alignment from Exonerate_protein2genome CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG agtttccttgtctgaaaactctgcaagtagctgtcttcctgtgcccacagTACCTTCAGCTTTCAAGGTCTGCGGCTTGACGAGGCTCTTCGACTCTACCTTGAAGCCTTCCGTTTGCCTGGGGAAGCCCCACTTATTCACAGGTTGCTGGAAGTTTTCACTGAGCATTGGAGGgtgagtcctgttagaagatgtgaattgggtataggaatcactgcagtacc Alignment from Exonerate_coding2genome CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG agtttccttgtctgaaaactctgcaagtagctgtcttcctgtgcccacagTACCTTCAGCTTTCAAGGTCTGCGGCTTGACGAGGCTCTTCGACTCTACCTTGAAGCCTTCCGTTTGCCTGGGGAAGCCCCACTTATTCACAGGTTGCTGGAAGTTTTCACTGAGCATTGGAGGgtgagtcctgttagaagatgtgaattgggtataggaatcactgcagtacc Alignment from GeneWise CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG agtttccttgtctgaaaactctgcaagtagctgtcttcctgtgcccacagTACCTTCAGCTTTCAAGGTCTGCGGCTTGACGAGGCTCTTCGACTCTACCTTGAAGCCTTCCGTTTGCCTGGGGAAGCCCCACTTATTCACAGGTTGCTGGAAGTTTTCACTGAGCATTGGAGGgtgagtcctgttagaagatgtgaattgggtataggaatcactgcagtacc #### Gbf1_ID9800_19 --> 0 - 0 Original Alignment AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG ggtaaaaatttcatcatgaggtgttacatatgacttgtaatttctttaagAGCTGCAATGGCTCTCCTTTTGCTAATAGTGGTGCCTGCTCTGCCCTAGCCTATGGTGCCATCATGCTGAACACTGACCAGCATAACCACAATGTTCAAAAGCAGAATACAACCATGACTCTAGAAgtatgagcagaatagctgtctaactttagaagcctaatctcctgggatgg Alignment from CESAR AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG ggtaaaaatttcatcatgaggtgttacatatgacttgtaatttctttaagAGCTGCAATGGCTCTCCTTTTGCTAATAGTGGTGCCTGCTCTGCCCTAGCCTATGGTGCCATCATGCTGAACACTGACCAGCATAACCACAATGTTCAAAAGCAGAATACAACCATGACTCTAGAAgtatgagcagaatagctgtctaactttagaagcctaatctcctgggatgg Alignment from Spaln_aa2Genome AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG ggtaaaaatttcatcatgaggtgttacatatgacttgtaatttctttaagAGCTGCAATGGCTCTCCTTTTGCTAATAGTGGTGCCTGCTCTGCCCTAGCCTATGGTGCCATCATGCTGAACACTGACCAGCATAACCACAATGTTCAAAAGCAGAATACAACCATGACTCTAGAAgtatgagcagaatagctgtctaactttagaagcctaatctcctgggatgg Alignment from Spaln_nt2Genome AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG ggtaaaaatttcatcatgaggtgttacatatgacttgtaatttctttaagAGCTGCAATGGCTCTCCTTTTGCTAATAGTGGTGCCTGCTCTGCCCTAGCCTATGGTGCCATCATGCTGAACACTGACCAGCATAACCACAATGTTCAAAAGCAGAATACAACCATGACTCTAGAAgtatgagcagaatagctgtctaactttagaagcctaatctcctgggatgg Alignment from Pairagon AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG ggtaaaaatttcatcatgaggtgttacatatgacttgtaatttctttaagAGCTGCAATGGCTCTCCTTTTGCTAATAGTGGTGCCTGCTCTGCCCTAGCCTATGGTGCCATCATGCTGAACACTGACCAGCATAACCACAATGTTCAAAAGCAGAATACAACCATGACTCTAGAAgtatgagcagaatagctgtctaactttagaagcctaatctcctgggatgg Alignment from Exonerate_protein2genome AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG ggtaaaaatttcatcatgaggtgttacatatgacttgtaatttctttaagAGCTGCAATGGCTCTCCTTTTGCTAATAGTGGTGCCTGCTCTGCCCTAGCCTATGGTGCCATCATGCTGAACACTGACCAGCATAACCACAATGTTCAAAAGCAGAATACAACCATGACTCTAGAAgtatgagcagaatagctgtctaactttagaagcctaatctcctgggatgg Alignment from Exonerate_coding2genome AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG ggtaaaaatttcatcatgaggtgttacatatgacttgtaatttctttaagAGCTGCAATGGCTCTCCTTTTGCTAATAGTGGTGCCTGCTCTGCCCTAGCCTATGGTGCCATCATGCTGAACACTGACCAGCATAACCACAATGTTCAAAAGCAGAATACAACCATGACTCTAGAAgtatgagcagaatagctgtctaactttagaagcctaatctcctgggatgg Alignment from GeneWise AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG ggtaaaaatttcatcatgaggtgttacatatgacttgtaatttctttaagAGCTGCAATGGCTCTCCTTTTGCTAATAGTGGTGCCTGCTCTGCCCTAGCCTATGGTGCCATCATGCTGAACACTGACCAGCATAACCACAATGTTCAAAAGCAGAATACAACCATGACTCTAGAAgtatgagcagaatagctgtctaactttagaagcctaatctcctgggatgg #### Gbf1_ID9806_25 --> 1 - 0 Original Alignment aGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG ccagagaagcagatattatcagttctatccccctccacgtgatccaatagaGGAAAGTCAACAGTTTTGAGCTTTGTAAGCTGGCGGACTTTGAGTGGCCCTCAACAGTCAAGTGTCCAGGGTCCATCTACAGAGAACCAGGAGGCCAAAAGGGTGGCCTTAGATTGTATTAAGgtaaagtgttgacccaatgttacaaggataaccatgcacggatattatag Alignment from CESAR aGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG ccagagaagcagatattatcagttctatccccctccacgtgatccaatagaGGAAAGTCAACAGTTTTGAGCTTTGTAAGCTGGCGGACTTTGAGTGGCCCTCAACAGTCAAGTGTCCAGGGTCCATCTACAGAGAACCAGGAGGCCAAAAGGGTGGCCTTAGATTGTATTAAGgtaaagtgttgacccaatgttacaaggataaccatgcacggatattatag Alignment from Spaln_aa2Genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG ccagagaagcagatattatcagttctatccccctccacgtgatccaatagAGGAAAGTCAACAGTTTTGAGCTTTGTAAGCTGGCGGACTTTGAGTGGCCCTCAACAGTCAAGTGTCCAGGGTCCATCTACAGAGAACCAGGAGGCCAAAAGGGTGGCCTTAGATTGTATTAAGgtaaagtgttgacccaatgttacaaggataaccatgcacggatattatag Alignment from Spaln_nt2Genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG ccagagaagcagatattatcagttctatccccctccacgtgatccaatagAGGAAAGTCAACAGTTTTGAGCTTTGTAAGCTGGCGGACTTTGAGTGGCCCTCAACAGTCAAGTGTCCAGGGTCCATCTACAGAGAACCAGGAGGCCAAAAGGGTGGCCTTAGATTGTATTAAGgtaaagtgttgacccaatgttacaaggataaccatgcacggatattatag Alignment from Pairagon AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG ccagagaagcagatattatcagttctatccccctccacgtgatccaatagAGGAAAGTCAACAGTTTTGAGCTTTGTAAGCTGGCGGACTTTGAGTGGCCCTCAACAGTCAAGTGTCCAGGGTCCATCTACAGAGAACCAGGAGGCCAAAAGGGTGGCCTTAGATTGTATTAAGgtaaagtgttgacccaatgttacaaggataaccatgcacggatattatag Alignment from Exonerate_protein2genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG ccagagaagcagatattatcagttctatccccctccacgtgatccaatagAGGAAAGTCAACAGTTTTGAGCTTTGTAAGCTGGCGGACTTTGAGTGGCCCTCAACAGTCAAGTGTCCAGGGTCCATCTACAGAGAACCAGGAGGCCAAAAGGGTGGCCTTAGATTGTATTAAGgtaaagtgttgacccaatgttacaaggataaccatgcacggatattatag Alignment from Exonerate_coding2genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG ccagagaagcagatattatcagttctatccccctccacgtgatccaatagAGGAAAGTCAACAGTTTTGAGCTTTGTAAGCTGGCGGACTTTGAGTGGCCCTCAACAGTCAAGTGTCCAGGGTCCATCTACAGAGAACCAGGAGGCCAAAAGGGTGGCCTTAGATTGTATTAAGgtaaagtgttgacccaatgttacaaggataaccatgcacggatattatag Alignment from GeneWise AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG ccagagaagcagatattatcagttctatccccctccacgtgatccaatagAGGAAAGTCAACAGTTTTGAGCTTTGTAAGCTGGCGGACTTTGAGTGGCCCTCAACAGTCAAGTGTCCAGGGTCCATCTACAGAGAACCAGGAGGCCAAAAGGGTGGCCTTAGATTGTATTAAGgtaaagtgttgacccaatgttacaaggataaccatgcacggatattatag #### Gbf1_ID9812_31 --> 0 - 1 Original Alignment GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTg tatcgcacctaacctgaaataagggcacatgttttttgttctttctgtagGTGGGGAAGGATGATATTGATAATTCTAAGCCAGGGGCAGGACTCAGTAGGCCAGGTACTTCACCACTGGTCAACCAGTATAGCCTCACAGTAGGCTTGGATCTGGGCCCACATGACACTAAGTCCCTACTTAAGTGTGTTGAATCTCTGTCCTTCATTGTCAAAGATGCTGCCCACATCACACCTGATAATTTTGAACTGGGTGTCAAGACCCTCTGTATCTTTGTAGAGGCCAGTCTGAATGATggtactgtatcctacacaatagtgagtacatcatgagtgacgaggaggaat Alignment from CESAR GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTg tatcgcacctaacctgaaataagggcacatgttttttgttctttctgtagGTGGGGAAGGATGATATTGATAATTCTAAGCCAGGGGCAGGACTCAGTAGGCCAGGTACTTCACCACTGGTCAACCAGTATAGCCTCACAGTAGGCTTGGATCTGGGCCCACATGACACTAAGTCCCTACTTAAGTGTGTTGAATCTCTGTCCTTCATTGTCAAAGATGCTGCCCACATCACACCTGATAATTTTGAACTGGGTGTCAAGACCCTCTGTATCTTTGTAGAGGCCAGTCTGAATGATggtactgtatcctacacaatagtgagtacatcatgagtgacgaggaggaat Alignment from Spaln_aa2Genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatcgcacctaacctgaaataagggcacatgttttttgttctttctgtagGTGGGGAAGGATGATATTGATAATTCTAAGCCAGGGGCAGGACTCAGTAGGCCAGGTACTTCACCACTGGTCAACCAGTATAGCCTCACAGTAGGCTTGGATCTGGGCCCACATGACACTAAGTCCCTACTTAAGTGTGTTGAATCTCTGTCCTTCATTGTCAAAGATGCTGCCCACATCACACCTGATAATTTTGAACTGGGTGTCAAGACCCTCTGTATCTTTGTAGAGGCCAGTCTGAATGATGgtactgtatcctacacaatagtgagtacatcatgagtgacgaggaggaat Alignment from Spaln_nt2Genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatcgcacctaacctgaaataagggcacatgttttttgttctttctgtagGTGGGGAAGGATGATATTGATAATTCTAAGCCAGGGGCAGGACTCAGTAGGCCAGGTACTTCACCACTGGTCAACCAGTATAGCCTCACAGTAGGCTTGGATCTGGGCCCACATGACACTAAGTCCCTACTTAAGTGTGTTGAATCTCTGTCCTTCATTGTCAAAGATGCTGCCCACATCACACCTGATAATTTTGAACTGGGTGTCAAGACCCTCTGTATCTTTGTAGAGGCCAGTCTGAATGATGgtactgtatcctacacaatagtgagtacatcatgagtgacgaggaggaat Alignment from Pairagon GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatcgcacctaacctgaaataagggcacatgttttttgttctttctgtagGTGGGGAAGGATGATATTGATAATTCTAAGCCAGGGGCAGGACTCAGTAGGCCAGGTACTTCACCACTGGTCAACCAGTATAGCCTCACAGTAGGCTTGGATCTGGGCCCACATGACACTAAGTCCCTACTTAAGTGTGTTGAATCTCTGTCCTTCATTGTCAAAGATGCTGCCCACATCACACCTGATAATTTTGAACTGGGTGTCAAGACCCTCTGTATCTTTGTAGAGGCCAGTCTGAATGATGgtactgtatcctacacaatagtgagtacatcatgagtgacgaggaggaat Alignment from Exonerate_protein2genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatcgcacctaacctgaaataagggcacatgttttttgttctttctgtagGTGGGGAAGGATGATATTGATAATTCTAAGCCAGGGGCAGGACTCAGTAGGCCAGGTACTTCACCACTGGTCAACCAGTATAGCCTCACAGTAGGCTTGGATCTGGGCCCACATGACACTAAGTCCCTACTTAAGTGTGTTGAATCTCTGTCCTTCATTGTCAAAGATGCTGCCCACATCACACCTGATAATTTTGAACTGGGTGTCAAGACCCTCTGTATCTTTGTAGAGGCCAGTCTGAATGATGgtactgtatcctacacaatagtgagtacatcatgagtgacgaggaggaat Alignment from Exonerate_coding2genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatcgcacctaacctgaaataagggcacatgttttttgttctttctgtagGTGGGGAAGGATGATATTGATAATTCTAAGCCAGGGGCAGGACTCAGTAGGCCAGGTACTTCACCACTGGTCAACCAGTATAGCCTCACAGTAGGCTTGGATCTGGGCCCACATGACACTAAGTCCCTACTTAAGTGTGTTGAATCTCTGTCCTTCATTGTCAAAGATGCTGCCCACATCACACCTGATAATTTTGAACTGGGTGTCAAGACCCTCTGTATCTTTGTAGAGGCCAGTCTGAATGATGgtactgtatcctacacaatagtgagtacatcatgagtgacgaggaggaat Alignment from GeneWise GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatcgcacctaacctgaaataagggcacatgttttttgttctttctgtagGTGGGGAAGGATGATATTGATAATTCTAAGCCAGGGGCAGGACTCAGTAGGCCAGGTACTTCACCACTGGTCAACCAGTATAGCCTCACAGTAGGCTTGGATCTGGGCCCACATGACACTAAGTCCCTACTTAAGTGTGTTGAATCTCTGTCCTTCATTGTCAAAGATGCTGCCCACATCACACCTGATAATTTTGAACTGGGTGTCAAGACCCTCTGTATCTTTGTAGAGGCCAGTCTGAATGATGgtactgtatcctacacaatagtgagtacatcatgagtgacgaggaggaat #### Gbf1_ID9816_35 --> 0 - 0 Original Alignment GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG acaacacacaccctgaagggttgatgtaattactaccttatttctttcagGTGCTATTTCCCCTTCTTTCCAAGCTCTTAGAGAATATTAGCCCTGCGGATGTAGGTGGGATGGAAGAGACACGGATGCGGGCATCTACACTCCTTTCAAAGgtgagttaccttgtttgcacactgacaagatggttatctcatcaatggag Alignment from CESAR GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG acaacacacaccctgaagggttgatgtaattactaccttatttctttcagGTGCTATTTCCCCTTCTTTCCAAGCTCTTAGAGAATATTAGCCCTGCGGATGTAGGTGGGATGGAAGAGACACGGATGCGGGCATCTACACTCCTTTCAAAGgtgagttaccttgtttgcacactgacaagatggttatctcatcaatggag Alignment from Spaln_aa2Genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG acaacacacaccctgaagggttgatgtaattactaccttatttctttcagGTGCTATTTCCCCTTCTTTCCAAGCTCTTAGAGAATATTAGCCCTGCGGATGTAGGTGGGATGGAAGAGACACGGATGCGGGCATCTACACTCCTTTCAAAGgtgagttaccttgtttgcacactgacaagatggttatctcatcaatggag Alignment from Spaln_nt2Genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG acaacacacaccctgaagggttgatgtaattactaccttatttctttcagGTGCTATTTCCCCTTCTTTCCAAGCTCTTAGAGAATATTAGCCCTGCGGATGTAGGTGGGATGGAAGAGACACGGATGCGGGCATCTACACTCCTTTCAAAGgtgagttaccttgtttgcacactgacaagatggttatctcatcaatggag Alignment from Pairagon GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG acaacacacaccctgaagggttgatgtaattactaccttatttctttcagGTGCTATTTCCCCTTCTTTCCAAGCTCTTAGAGAATATTAGCCCTGCGGATGTAGGTGGGATGGAAGAGACACGGATGCGGGCATCTACACTCCTTTCAAAGgtgagttaccttgtttgcacactgacaagatggttatctcatcaatggag Alignment from Exonerate_protein2genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG acaacacacaccctgaagggttgatgtaattactaccttatttctttcagGTGCTATTTCCCCTTCTTTCCAAGCTCTTAGAGAATATTAGCCCTGCGGATGTAGGTGGGATGGAAGAGACACGGATGCGGGCATCTACACTCCTTTCAAAGgtgagttaccttgtttgcacactgacaagatggttatctcatcaatggag Alignment from Exonerate_coding2genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG acaacacacaccctgaagggttgatgtaattactaccttatttctttcagGTGCTATTTCCCCTTCTTTCCAAGCTCTTAGAGAATATTAGCCCTGCGGATGTAGGTGGGATGGAAGAGACACGGATGCGGGCATCTACACTCCTTTCAAAGgtgagttaccttgtttgcacactgacaagatggttatctcatcaatggag Alignment from GeneWise GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCCACACTGCTCTCAAAG acaacacacaccctgaagggttgatgtaattactaccttatttctttcagGTGCTATTTCCCCTTCTTTCCAAGCTCTTAGAGAATATTAGCCCTGCGGATGTAGGTGGGATGGAAGAGACACGGATGCGGGCATCTACACTCCTTTCAAAGgtgagttaccttgtttgcacactgacaagatggttatctcatcaatggag #### Gda_ID4899_6 --> 1 - 0 Original Alignment aTTTGTGTCAGAAATGCTGCAAAAGAAT gagatctgggcagaaaataccttgaatcttatttccatctgactttgcagaTTTGTGTTAATAATGTTGCAAAAAAATgtgagcgattctgtacctgactcctataaatggtccatcccaaaatacta Alignment from CESAR aTTTGTGTCAGAAATGCTGCAAAAGAAT gagatctgggcagaaaataccttgaatcttatttccatctgactttgcagaTTTGTGTTAATAATGTTGCAAAAAAATgtgagcgattctgtacctgactcctataaatggtccatcccaaaatacta Alignment from Spaln_aa2Genome ATTTGTGTCAGAAATGCTGCAAAAGAAT gagatctgggcagaaaataccttgaatcttatttccatctgactttgcagATTTGTGTTAATAATGTTGCAAAAAAATgtgagcgattctgtacctgactcctataaatggtccatcccaaaatacta Alignment from Spaln_nt2Genome ATTTGTGTCAGAAATGCTGCAAAAGAAT gagatctgggcagaaaataccttgaatcttatttccatctgactttgcagATTTGTGTTAATAATGTTGCAAAAAAATgtgagcgattctgtacctgactcctataaatggtccatcccaaaatacta Alignment from Pairagon ATTTGTGTCAGAAATGCTGCAAAAGAAT gagatctgggcagaaaataccttgaatcttatttccatctgactttgcagATTTGTGTTAATAATGTTGCAAAAAAATgtgagcgattctgtacctgactcctataaatggtccatcccaaaatacta Alignment from Exonerate_protein2genome gagatctgggcagaaaataccttgaatcttatttccatctgactttgcagatttgtgttaataatgttgcaaaaaaatgtgagcgattctgtacctgactcctataaatggtccatcccaaaatacta Alignment from Exonerate_coding2genome gagatctgggcagaaaataccttgaatcttatttccatctgactttgcagatttgtgttaataatgttgcaaaaaaatgtgagcgattctgtacctgactcctataaatggtccatcccaaaatacta Alignment from GeneWise ATTTGTGTCAGAAATGCTGCAAAAGAAT gagatctgggcagaaaataccttgaatcttatttccatctgactttgcagATTTGTGTTAATAATGTTGCAAAAAAATgtgagcgattctgtacctgactcctataaatggtccatcccaaaatacta #### Gda_ID4903_3 --> 1 - 0 Original Alignment tGAGTTCTTCATGCCAGGCCTTGTTGATACCCACATCCATGCCCCTCAGTATGCCTTTGCTGGAAGCAACGTTGACCTGCCGCTTTTGGAGTGGCTGAATAAGTATACATTTCCCACAGAACAAAGGTTCCGGAGCACTGATGTGGCTGAAGAAGTCTACACTAGAGTTGTT ccggtataatgtaatgccttcaactctgctccagtctggcttctttctagtGAACTCTTCATGCCAGGTCTAGTTGATACCCACATTCATGCCCCTCAGCATGCCTTTGCT---------GCGGACTTACCACTTCTGGAGTGGTTAAATAAAGCTACTTTTCCCATGGAACAAAGGTTCCGGAGCACAGCTGCAGCCAAAGAGGTCTACACGAGGGTCGTAgtgagtaatctgtgagtctgcatgcatcttgtaagggtactcatagacag Alignment from CESAR tGAGTTCTTCATGCCAGGCCTTGTTGATACCCACATCCATGCCCCTCAGTATGCCTTTGCTGGAAGCAACGTTGACCTGCCGCTTTTGGAGTGGCTGAATAAGTATACATTTCCCACAGAACAAAGGTTCCGGAGCACTGATGTGGCTGAAGAAGTCTACACTAGAGTTGTT ccggtataatgtaatgccttcaactctgctccagtctggcttctttctagtGAACTCTTCATGCCAGGTCTAGTTGATACCCACATTCATGCCCCTCAGCATGCCTTTGCT---------GCGGACTTACCACTTCTGGAGTGGTTAAATAAAGCTACTTTTCCCATGGAACAAAGGTTCCGGAGCACAGCTGCAGCCAAAGAGGTCTACACGAGGGTCGTAgtgagtaatctgtgagtctgcatgcatcttgtaagggtactcatagacag Alignment from Spaln_aa2Genome TGAGTTCTTCATGCCAGGCCTTGTTGATACCCACATCCATGCCCCTCAGTATGCCTTTGCTGGAAGCAACGTTGACCTGCCGCTTTTGGAGTGGCTGAATAAGTATACATTTCCCACAGAACAAAGGTTCCGGAGCACTGATGTGGCTGAAGAAGTCTACACTAGAGTTGTT ccggtataatgtaatgccttcaactctgctccagtctggcttctttctagTGAACTCTTCATGCCAGGTCTAGTTGATACCCACATTCATGCCCCTCAGCATGCCTTTGCT---------GCGGACTTACCACTTCTGGAGTGGTTAAATAAAGCTACTTTTCCCATGGAACAAAGGTTCCGGAGCACAGCTGCAGCCAAAGAGGTCTACACGAGGGTCGTAgtgagtaatctgtgagtctgcatgcatcttgtaagggtactcatagacag Alignment from Spaln_nt2Genome TGAGTTCTTCATGCCAGGCCTTGTTGATACCCACATCCATGCCCCTCAGTATGCCTTTGCTGGAAGCAACGTTGACCTGCCGCTTTTGGAGTGGCTGAATAAGTATACATTTCCCACAGAACAAAGGTTCCGGAGCACTGATGTGGCTGAAGAAGTCTACACTAGAGTTGTT ccggtataatgtaatgccttcaactctgctccagtctggcttctttctagTGAACTCTTCATGCCAGGTCTAGTTGATACCCACATTCATGCCCCTCAGCATGCCTTTGCTG-------CG--GACTTACCACTTCTGGAGTGGTTAAATAAAGCTACTTTTCCCATGGAACAAAGGTTCCGGAGCACAGCTGCAGCCAAAGAGGTCTACACGAGGGTCGTAgtgagtaatctgtgagtctgcatgcatcttgtaagggtactcatagacag Alignment from Pairagon TGAGTTCTTCATGCCAGGCCTTGTTGATACCCACATCCATGCCCCTCAGTATGCCTTTGCTGGAAGCAACGTTGACCTGCCGCTTTTGGAGTGGCTGAATAAGTATACATTTCCCACAGAACAAAGGTTCCGGAGCACTGATGTGGCTGAAGAAGTCTACACTAGAGTTGTT ccggtataatgtaatgccttcaactctgctccagtctggcttctttctagTGAACTCTTCATGCCAGGTCTAGTTGATACCCACATTCATGCCCCTCAGCATGCCTTTGCT---------GCGGACTTACCACTTCTGGAGTGGTTAAATAAAGCTACTTTTCCCATGGAACAAAGGTTCCGGAGCACAGCTGCAGCCAAAGAGGTCTACACGAGGGTCGTAgtgagtaatctgtgagtctgcatgcatcttgtaagggtactcatagacag Alignment from Exonerate_protein2genome TGAGTTCTTCATGCCAGGCCTTGTTGATACCCACATCCATGCCCCTCAGTATGCCTTTGCTGGAAGCAACGTTGACCTGCCGCTTTTGGAGTGGCTGAATAAGTATACATTTCCCACAGAACAAAGGTTCCGGAGCACTGATGTGGCTGAAGAAGTCTACACTAGAGTTGTT ccggtataatgtaatgccttcaactctgctccagtctggcttctttctagTGAACTCTTCATGCCAGGTCTAGTTGATACCCACATTCATGCCCCTCAGCATGCCTTTGCT---------GCGGACTTACCACTTCTGGAGTGGTTAAATAAAGCTACTTTTCCCATGGAACAAAGGTTCCGGAGCACAGCTGCAGCCAAAGAGGTCTACACGAGGGTCGTAgtgagtaatctgtgagtctgcatgcatcttgtaagggtactcatagacag Alignment from Exonerate_coding2genome TGAGTTCTTCATGCCAGGCCTTGTTGATACCCACATCCATGCCCCTCAGTATGCCTTTGCTGGAAGCAACGTTGACCTGCCGCTTTTGGAGTGGCTGAATAAGTATACATTTCCCACAGAACAAAGGTTCCGGAGCACTGATGTGGCTGAAGAAGTCTACACTAGAGTTGTT ccggtataatgtaatgccttcaactctgctccagtctggcttctttctagTGAACTCTTCATGCCAGGTCTAGTTGATACCCACATTCATGCCCCTCAGCATGCCTTTGCT---------GCGGACTTACCACTTCTGGAGTGGTTAAATAAAGCTACTTTTCCCATGGAACAAAGGTTCCGGAGCACAGCTGCAGCCAAAGAGGTCTACACGAGGGTCGTAgtgagtaatctgtgagtctgcatgcatcttgtaagggtactcatagacag Alignment from GeneWise TGAGTTCTTCATGCCAGGCCTTGTTGATACCCACATCCATGCCCCTCAGTATGCCTTTGCTGGAAGCAACGTTGACCTGCCGCTTTTGGAGTGGCTGAATAAGTATACATTTCCCACAGAACAAAGGTTCCGGAGCACTGATGTGGCTGAAGAAGTCTACACTAGAGTTGTT ccggtataatgtaatgccttcaactctgctccagtctggcttctttctagTGAACTCTTCATGCCAGGTCTAGTTGATACCCACATTCATGCCCCTCAGCATGCCTTTGCT---------GCGGACTTACCACTTCTGGAGTGGTTAAATAAAGCTACTTTTCCCATGGAACAAAGGTTCCGGAGCACAGCTGCAGCCAAAGAGGTCTACACGAGGGTCGTAgtgagtaatctgtgagtctgcatgcatcttgtaagggtactcatagacag #### Gda_ID4904_2 --> 0 - 2 Original Alignment ATAGTGTTTCTAGAAGAATCATCTCAGCAAGAAAAACTGGCCAAGGAGTGGTGCTTCAAACCATGTGAGATCAGAGAACTGAGCCACca tgcttgtacccatccctcccctaaaagacctgctcttttctcttttttagATAGTGTTTCTGGAAGAGTTATCTCAACAAGAAAAACTGGCTAAGGAGTGGTGCTTTAAGCCATGCGATATCAGAGAACTGAGCCACcagtaagctttactctgtcttttgcattaacttaaaacagtacaattctctc Alignment from CESAR ATAGTGTTTCTAGAAGAATCATCTCAGCAAGAAAAACTGGCCAAGGAGTGGTGCTTCAAACCATGTGAGATCAGAGAACTGAGCCACca tgcttgtacccatccctcccctaaaagacctgctcttttctcttttttagATAGTGTTTCTGGAAGAGTTATCTCAACAAGAAAAACTGGCTAAGGAGTGGTGCTTTAAGCCATGCGATATCAGAGAACTGAGCCACcagtaagctttactctgtcttttgcattaacttaaaacagtacaattctctc Alignment from Spaln_aa2Genome ATAGTGTTTCTAGAAGAATCATCTCAGCAAGAAAAACTGGCCAAGGAGTGGTGCTTCAAACCATGTGAGATCAGAGAACTGAGCCACCA tgcttgtacccatccctcccctaaaagacctgctcttttctcttttttagATAGTGTTTCTGGAAGAGTTATCTCAACAAGAAAAACTGGCTAAGGAGTGGTGCTTTAAGCCATGCGATATCAGAGAACTGAGCCACCAgtaagctttactctgtcttttgcattaacttaaaacagtacaattctctc Alignment from Spaln_nt2Genome ATAGTGTTTCTAGAAGAATCATCTCAGCAAGAAAAACTGGCCAAGGAGTGGTGCTTCAAACCATGTGAGATCAGAGAACTGAGCCACCA tgcttgtacccatccctcccctaaaagacctgctcttttctcttttttagATAGTGTTTCTGGAAGAGTTATCTCAACAAGAAAAACTGGCTAAGGAGTGGTGCTTTAAGCCATGCGATATCAGAGAACTGAGCCACCAgtaagctttactctgtcttttgcattaacttaaaacagtacaattctctc Alignment from Pairagon ATAGTGTTTCTAGAAGAATCATCTCAGCAAGAAAAACTGGCCAAGGAGTGGTGCTTCAAACCATGTGAGATCAGAGAACTGAGCCACCA tgcttgtacccatccctcccctaaaagacctgctcttttctcttttttagATAGTGTTTCTGGAAGAGTTATCTCAACAAGAAAAACTGGCTAAGGAGTGGTGCTTTAAGCCATGCGATATCAGAGAACTGAGCCACCAgtaagctttactctgtcttttgcattaacttaaaacagtacaattctctc Alignment from Exonerate_protein2genome ATAGTGTTTCTAGAAGAATCATCTCAGCAAGAAAAACTGGCCAAGGAGTGGTGCTTCAAACCATGTGAGATCAGAGAACTGAGCCACCA tgcttgtacccatccctcccctaaaagacctgctcttttctcttttttagATAGTGTTTCTGGAAGAGTTATCTCAACAAGAAAAACTGGCTAAGGAGTGGTGCTTTAAGCCATGCGATATCAGAGAACTGAGCCACCAgtaagctttactctgtcttttgcattaacttaaaacagtacaattctctc Alignment from Exonerate_coding2genome ATAGTGTTTCTAGAAGAATCATCTCAGCAAGAAAAACTGGCCAAGGAGTGGTGCTTCAAACCATGTGAGATCAGAGAACTGAGCCACCA tgcttgtacccatccctcccctaaaagacctgctcttttctcttttttagATAGTGTTTCTGGAAGAGTTATCTCAACAAGAAAAACTGGCTAAGGAGTGGTGCTTTAAGCCATGCGATATCAGAGAACTGAGCCACCAgtaagctttactctgtcttttgcattaacttaaaacagtacaattctctc Alignment from GeneWise ATAGTGTTTCTAGAAGAATCATCTCAGCAAGAAAAACTGGCCAAGGAGTGGTGCTTCAAACCATGTGAGATCAGAGAACTGAGCCACCA tgcttgtacccatccctcccctaaaagacctgctcttttctcttttttagATAGTGTTTCTGGAAGAGTTATCTCAACAAGAAAAACTGGCTAAGGAGTGGTGCTTTAAGCCATGCGATATCAGAGAACTGAGCCACCAgtaagctttactctgtcttttgcattaacttaaaacagtacaattctctc #### Gfra1_ID12582_8 --> 0 - 0 Original Alignment GCACAGAAGCTGAAATCCAATGTATCGGGCAGTACACATCTCTGTCTTTCTGAT tccactctattaggttaagcctccttctacattttttctctgtcccccagGCACAGAAGCTCAAATCCAATGTCTTAGGCAGCACCCATCTCTGCTTATTTGATgtattttactgtctttctcgactcctgtaactctttacggtcaaattgat Alignment from CESAR GCACAGAAGCTGAAATCCAATGTATCGGGCAGTACACATCTCTGTCTTTCTGAT tccactctattaggttaagcctccttctacattttttctctgtcccccagGCACAGAAGCTCAAATCCAATGTCTTAGGCAGCACCCATCTCTGCTTATTTGATgtattttactgtctttctcgactcctgtaactctttacggtcaaattgat Alignment from Spaln_aa2Genome GCACAGAAGCTGAAATCCAATGTATCGGGCAGTACACATCTCTGTCTTTCTGAT tccactctattaggttaagcctccttctacattttttctctgtcccccagGCACAGAAGCTCAAATCCAATGTCTTAGGCAGCACCCATCTCTGCTTATTTGATgtattttactgtctttctcgactcctgtaactctttacggtcaaattgat Alignment from Spaln_nt2Genome GCACAGAAGCTGAAATCCAATGTATCGGGCAGTACACATCTCTGTCTTTCTGAT tccactctattaggttaagcctccttctacattttttctctgtcccccagGCACAGAAGCTCAAATCCAATGTCTTAGGCAGCACCCATCTCTGCTTATTTGATgtattttactgtctttctcgactcctgtaactctttacggtcaaattgat Alignment from Pairagon GCACAGAAGCTGAAATCCAATGTATCGGGCAGTACACATCT---------------------CTGTCTTTCT-------------------------------- tccactctattaggttaagcctccttctacattttttctctgtcccccagGCACAGAAGCTCAAATCCAATGTCTTAGGCAGCACCCATCTCTGCTTATTTGATGTATTTTACTGTCTTTCTCGACTCCTGTAACTCTTTACGGTCAAATTGAT Alignment from Exonerate_protein2genome GCACAGAAGCTGAAATCCAATGTATCGGGCAGTACACATCTCTGTCTTTCTGAT tccactctattaggttaagcctccttctacattttttctctgtcccccagGCACAGAAGCTCAAATCCAATGTCTTAGGCAGCACCCATCTCTGCTTATTTGATgtattttactgtctttctcgactcctgtaactctttacggtcaaattgat Alignment from Exonerate_coding2genome GCACAGAAGCTGAAATCCAATGTATCGGGCAGTACACATCTCTGTCTTTCTGATAATGATTAC tccactctattaggttaagcctccttctacattttttctctgtcccccagGCACAGAAGCTCAAATCCAATGTCTTAGGCAGCACCCATCTCTGCTTATTTGATGTATTTTACtgtctttctcgactcctgtaactctttacggtcaaattgat Alignment from GeneWise GCACAGAAGCTGAAATCCAATGTATCGGGCAGTACACATCTCTGTCTTTCTGAT tccactctattaggttaagcctccttctacattttttctctgtcccccagGCACAGAAGCTCAAATCCAATGTCTTAGGCAGCACCCATCTCTGCTTATTTGATgtattttactgtctttctcgactcctgtaactctttacggtcaaattgat #### Gfra1_ID12601_6 --> 2 - 1 Original Alignment gcACAGTCATGACTCCTAACTACATAGACTCCAGCAGCCTCAGTGTGGCGCCGTGGTGCGATTGCAGCAACAGTGGCAATGACCTGGAAGATTGCCTGAAGTTTCTGAATTTTTTTAAGGACAATACGTGTCTCa gaaaggatccaacatggcttgtctttctgactttatatgggcctgcataggcACAGTCATGACTCCTAACTACATAGACTCCAGTAGCCTCAGTGTGGCACCGTGGTGCGATTGCAGCAACAGTGGCAATGACCTGGAAGATTGCTTGAAGTTTCTAAATTTTTTTAAGGACAATACGTGTCTCagtaagactcattgtttgaatttcatgcttgtgatgtggttatagctcaag Alignment from CESAR gcACAGTCATGACTCCTAACTACATAGACTCCAGCAGCCTCAGTGTGGCGCCGTGGTGCGATTGCAGCAACAGTGGCAATGACCTGGAAGATTGCCTGAAGTTTCTGAATTTTTTTAAGGACAATACGTGTCTCa gaaaggatccaacatggcttgtctttctgactttatatgggcctgcataggcACAGTCATGACTCCTAACTACATAGACTCCAGTAGCCTCAGTGTGGCACCGTGGTGCGATTGCAGCAACAGTGGCAATGACCTGGAAGATTGCTTGAAGTTTCTAAATTTTTTTAAGGACAATACGTGTCTCagtaagactcattgtttgaatttcatgcttgtgatgtggttatagctcaag Alignment from Spaln_aa2Genome GCACAGTCATGACTCCTAACTACATAGACTCCAGCAGCCTCAGTGTGGCGCCGTGGTGCGATTGCAGCAACAGTGGCAATGACCTGGAAGATTGCCTGAAGTTTCTGAATTTTTTTAAGGACAATACGTGTCTCA gaaaggatccaacatggcttgtctttctgactttatatgggcctgcatagGCACAGTCATGACTCCTAACTACATAGACTCCAGTAGCCTCAGTGTGGCACCGTGGTGCGATTGCAGCAACAGTGGCAATGACCTGGAAGATTGCTTGAAGTTTCTAAATTTTTTTAAGGACAATACGTGTCTCAgtaagactcattgtttgaatttcatgcttgtgatgtggttatagctcaag Alignment from Spaln_nt2Genome GCACAGTCATGACTCCTAACTACATAGACTCCAGCAGCCTCAGTGTGGCGCCGTGGTGCGATTGCAGCAACAGTGGCAATGACCTGGAAGATTGCCTGAAGTTTCTGAATTTTTTTAAGGACAATACGTGTCTCA gaaaggatccaacatggcttgtctttctgactttatatgggcctgcatagGCACAGTCATGACTCCTAACTACATAGACTCCAGTAGCCTCAGTGTGGCACCGTGGTGCGATTGCAGCAACAGTGGCAATGACCTGGAAGATTGCTTGAAGTTTCTAAATTTTTTTAAGGACAATACGTGTCTCAgtaagactcattgtttgaatttcatgcttgtgatgtggttatagctcaag Alignment from Pairagon GCACAGTCATGACTCCTAACTACATAGACTCCAGCAGCCTCAGTGTGGCGCCGTGGTGCGATTGCAGCAACAGTGGCAATGACCTGGAAGATTGCCTGAAGTTTCTGAATTTTTTTAAGGACAATACGTGTCTCA gaaaggatccaacatggcttgtctttctgactttatatgggcctgcatagGCACAGTCATGACTCCTAACTACATAGACTCCAGTAGCCTCAGTGTGGCACCGTGGTGCGATTGCAGCAACAGTGGCAATGACCTGGAAGATTGCTTGAAGTTTCTAAATTTTTTTAAGGACAATACGTGTCTCAgtaagactcattgtttgaatttcatgcttgtgatgtggttatagctcaag Alignment from Exonerate_protein2genome GCACAGTCATGACTCCTAACTACATAGACTCCAGCAGCCTCAGTGTGGCGCCGTGGTGCGATTGCAGCAACAGTGGCAATGACCTGGAAGATTGCCTGAAGTTTCTGAATTTTTTTAAGGACAATACGTGTCTCA gaaaggatccaacatggcttgtctttctgactttatatgggcctgcatagGCACAGTCATGACTCCTAACTACATAGACTCCAGTAGCCTCAGTGTGGCACCGTGGTGCGATTGCAGCAACAGTGGCAATGACCTGGAAGATTGCTTGAAGTTTCTAAATTTTTTTAAGGACAATACGTGTCTCAgtaagactcattgtttgaatttcatgcttgtgatgtggttatagctcaag Alignment from Exonerate_coding2genome GCACAGTCATGACTCCTAACTACATAGACTCCAGCAGCCTCAGTGTGGCGCCGTGGTGCGATTGCAGCAACAGTGGCAATGACCTGGAAGATTGCCTGAAGTTTCTGAATTTTTTTAAGGACAATACGTGTCTCA gaaaggatccaacatggcttgtctttctgactttatatgggcctgcatagGCACAGTCATGACTCCTAACTACATAGACTCCAGTAGCCTCAGTGTGGCACCGTGGTGCGATTGCAGCAACAGTGGCAATGACCTGGAAGATTGCTTGAAGTTTCTAAATTTTTTTAAGGACAATACGTGTCTCAgtaagactcattgtttgaatttcatgcttgtgatgtggttatagctcaag Alignment from GeneWise GCACAGTCATGACTCCTAACTACATAGACTCCAGCAGCCTCAGTGTGGCGCCGTGGTGCGATTGCAGCAACAGTGGCAATGACCTGGAAGATTGCCTGAAGTTTCTGAATTTTTTTAAGGACAATACGTGTCTCA gaaaggatccaacatggcttgtctttctgactttatatgggcctgcatagGCACAGTCATGACTCCTAACTACATAGACTCCAGTAGCCTCAGTGTGGCACCGTGGTGCGATTGCAGCAACAGTGGCAATGACCTGGAAGATTGCTTGAAGTTTCTAAATTTTTTTAAGGACAATACGTGTCTCAgtaagactcattgtttgaatttcatgcttgtgatgtggttatagctcaag #### Gif_ID3281_5 --> 2 - 0 Original Alignment acACAGGAGCAGTGGCAACCTTGGCCCTGACCTGTATGTACAACAAGATTCCTGTGGGTTCTCAAGAAAACTACAGAGACCTGTTTGGTCAGGCACTGAAGGCTATTGTGGAGAAGATCAGCTTAAGGATCAAAGCTGATGGCATCATCGGAGACATCTACAGCACTGGCCTTGCCATGCAG ataaggattggctgaagggtaggttgcagattcggatctctcctccacagacACGACAGCAGTGGCGAGTCTGGCTCTGACTTGTATGTACAACAAGATTCCTGTTGGTTCCCAAGAGAACTACAGAGACCAGTTTGGACAAGCTTTAAAGGCTATTATAGAAAAGATCAGTTTAAGTATAAAAGCTGATGGCATTATTGGGGAGATATACAGCACTGGTCTTGCCATGCAGgtgggtcatactatgcattagggcatgcttaggacattgcaccatgcagt Alignment from CESAR acACAGGAGCAGTGGCAACCTTGGCCCTGACCTGTATGTACAACAAGATTCCTGTGGGTTCTCAAGAAAACTACAGAGACCTGTTTGGTCAGGCACTGAAGGCTATTGTGGAGAAGATCAGCTTAAGGATCAAAGCTGATGGCATCATCGGAGACATCTACAGCACTGGCCTTGCCATGCAG ataaggattggctgaagggtaggttgcagattcggatctctcctccacagacACGACAGCAGTGGCGAGTCTGGCTCTGACTTGTATGTACAACAAGATTCCTGTTGGTTCCCAAGAGAACTACAGAGACCAGTTTGGACAAGCTTTAAAGGCTATTATAGAAAAGATCAGTTTAAGTATAAAAGCTGATGGCATTATTGGGGAGATATACAGCACTGGTCTTGCCATGCAGgtgggtcatactatgcattagggcatgcttaggacattgcaccatgcagt Alignment from Spaln_aa2Genome ACACAGGAGCAGTGGCAACCTTGGCCCTGACCTGTATGTACAACAAGATTCCTGTGGGTTCTCAAGAAAACTACAGAGACCTGTTTGGTCAGGCACTGAAGGCTATTGTGGAGAAGATCAGCTTAAGGATCAAAGCTGATGGCATCATCGGAGACATCTACAGCACTGGCCTTGCCATGCAG ataaggattggctgaagggtaggttgcagattcggatctctcctccacagACACGACAGCAGTGGCGAGTCTGGCTCTGACTTGTATGTACAACAAGATTCCTGTTGGTTCCCAAGAGAACTACAGAGACCAGTTTGGACAAGCTTTAAAGGCTATTATAGAAAAGATCAGTTTAAGTATAAAAGCTGATGGCATTATTGGGGAGATATACAGCACTGGTCTTGCCATGCAGgtgggtcatactatgcattagggcatgcttaggacattgcaccatgcagt Alignment from Spaln_nt2Genome ACACAGGAGCAGTGGCAACCTTGGCCCTGACCTGTATGTACAACAAGATTCCTGTGGGTTCTCAAGAAAACTACAGAGACCTGTTTGGTCAGGCACTGAAGGCTATTGTGGAGAAGATCAGCTTAAGGATCAAAGCTGATGGCATCATCGGAGACATCTACAGCACTGGCCTTGCCATGCAG ataaggattggctgaagggtaggttgcagattcggatctctcctccacagACACGACAGCAGTGGCGAGTCTGGCTCTGACTTGTATGTACAACAAGATTCCTGTTGGTTCCCAAGAGAACTACAGAGACCAGTTTGGACAAGCTTTAAAGGCTATTATAGAAAAGATCAGTTTAAGTATAAAAGCTGATGGCATTATTGGGGAGATATACAGCACTGGTCTTGCCATGCAGgtgggtcatactatgcattagggcatgcttaggacattgcaccatgcagt Alignment from Pairagon ACACAGGAGCAGTGGCAACCTTGGCCCTGACCTGTATGTACAACAAGATTCCTGTGGGTTCTCAAGAAAACTACAGAGACCTGTTTGGTCAGGCACTGAAGGCTATTGTGGAGAAGATCAGCTTAAGGATCAAAGCTGATGGCATCATCGGAGACATCTACAGCACTGGCCTTGCCATGCAG ataaggattggctgaagggtaggttgcagattcggatctctcctccacagACACGACAGCAGTGGCGAGTCTGGCTCTGACTTGTATGTACAACAAGATTCCTGTTGGTTCCCAAGAGAACTACAGAGACCAGTTTGGACAAGCTTTAAAGGCTATTATAGAAAAGATCAGTTTAAGTATAAAAGCTGATGGCATTATTGGGGAGATATACAGCACTGGTCTTGCCATGCAGgtgggtcatactatgcattagggcatgcttaggacattgcaccatgcagt Alignment from Exonerate_protein2genome ACACAGGAGCAGTGGCAACCTTGGCCCTGACCTGTATGTACAACAAGATTCCTGTGGGTTCTCAAGAAAACTACAGAGACCTGTTTGGTCAGGCACTGAAGGCTATTGTGGAGAAGATCAGCTTAAGGATCAAAGCTGATGGCATCATCGGAGACATCTACAGCACTGGCCTTGCCATGCAG ataaggattggctgaagggtaggttgcagattcggatctctcctccacagACACGACAGCAGTGGCGAGTCTGGCTCTGACTTGTATGTACAACAAGATTCCTGTTGGTTCCCAAGAGAACTACAGAGACCAGTTTGGACAAGCTTTAAAGGCTATTATAGAAAAGATCAGTTTAAGTATAAAAGCTGATGGCATTATTGGGGAGATATACAGCACTGGTCTTGCCATGCAGgtgggtcatactatgcattagggcatgcttaggacattgcaccatgcagt Alignment from Exonerate_coding2genome ACACAGGAGCAGTGGCAACCTTGGCCCTGACCTGTATGTACAACAAGATTCCTGTGGGTTCTCAAGAAAACTACAGAGACCTGTTTGGTCAGGCACTGAAGGCTATTGTGGAGAAGATCAGCTTAAGGATCAAAGCTGATGGCATCATCGGAGACATCTACAGCACTGGCCTTGCCATGCAG ataaggattggctgaagggtaggttgcagattcggatctctcctccacagACACGACAGCAGTGGCGAGTCTGGCTCTGACTTGTATGTACAACAAGATTCCTGTTGGTTCCCAAGAGAACTACAGAGACCAGTTTGGACAAGCTTTAAAGGCTATTATAGAAAAGATCAGTTTAAGTATAAAAGCTGATGGCATTATTGGGGAGATATACAGCACTGGTCTTGCCATGCAGgtgggtcatactatgcattagggcatgcttaggacattgcaccatgcagt Alignment from GeneWise ACACAGGAGCAGTGGCAACCTTGGCCCTGACCTGTATGTACAACAAGATTCCTGTGGGTTCTCAAGAAAACTACAGAGACCTGTTTGGTCAGGCACTGAAGGCTATTGTGGAGAAGATCAGCTTAAGGATCAAAGCTGATGGCATCATCGGAGACATCTACAGCACTGGCCTTGCCATGCAG ataaggattggctgaagggtaggttgcagattcggatctctcctccacagACACGACAGCAGTGGCGAGTCTGGCTCTGACTTGTATGTACAACAAGATTCCTGTTGGTTCCCAAGAGAACTACAGAGACCAGTTTGGACAAGCTTTAAAGGCTATTATAGAAAAGATCAGTTTAAGTATAAAAGCTGATGGCATTATTGGGGAGATATACAGCACTGGTCTTGCCATGCAGgtgggtcatactatgcattagggcatgcttaggacattgcaccatgcagt #### Gldc_ID6393_21 --> 0 - 1 Original Alignment ATGATGGGTGGAAAGGGCCTCAAAGAAGCCACAGAAATCGCCATTCTAAATGCCAACTACATGGCCAAACGACTAGAGAAACACTACAGAGTCCTCTTTAGAGGTGCAAGAg acctgcatccaactggccatttgcagttagggatttgcttccttccttagATGATGGGTGGAAAGGGCCTTAAAGAGTCACAAGAGTCCACCATTTTGAATGCAAACTACATGTCAAAA---CTAGAGGAACATTACAGGGTACTGTTTAGGGGGGCTAGGggtaaagagttatgcaagccgcctttctgattggagatggatagcaatccg Alignment from CESAR ATGATGGGTGGAAAGGGCCTCAAAGAAGCCACAGAAATCGCCATTCTAAATGCCAACTACATGGCCAAACGACTAGAGAAACACTACAGAGTCCTCTTTAGAGGTGCAAGAg acctgcatccaactggccatttgcagttagggatttgcttccttccttagATGATGGGTGGAAAGGGCCTTAAAGAGTCACAAGAGTCCACCATTTTGAATGCAAACTACATGTCAAAA---CTAGAGGAACATTACAGGGTACTGTTTAGGGGGGCTAGGggtaaagagttatgcaagccgcctttctgattggagatggatagcaatccg Alignment from Spaln_aa2Genome ATGATGGGTGGAAAGGGCCTCAAAGAAGCCACAGAAATCGCCATTCTAAATGCCAACTACATGGCCAAACGACTAGAGAAACACTACAGAGTCCTCTTTAGAGGTGCAAGAG acctgcatccaactggccatttgcagttagggatttgcttccttccttagATGATGGGTGGAAAGGGCCTTAAAGAGTCACAAGAGTCCACCATTTTGAATGCAAACTACATGTCAAAA---CTAGAGGAACATTACAGGGTACTGTTTAGGGGGGCTAGGGgtaaagagttatgcaagccgcctttctgattggagatggatagcaatccg Alignment from Spaln_nt2Genome ATGATGGGTGGAAAGGGCCTCAAAGAAGCCACAGAAATCGCCATTCTAAATGCCAACTACATGGCCAAACGACTAGAGAAACACTACAGAGTCCTCTTTAGAGGTGCAAGAG acctgcatccaactggccatttgcagttagggatttgcttccttccttagATGATGGGTGGAAAGGGCCTTAAAGAGTCACAAGAGTCCACCATTTTGAATGCAAACTACATGTCAAA---ACTAGAGGAACATTACAGGGTACTGTTTAGGGGGGCTAGGGgtaaagagttatgcaagccgcctttctgattggagatggatagcaatccg Alignment from Pairagon ATGATGGGTGGAAAGGGCCTCAAAGAAGCCACAGAAATCGCCATTCTAAATGCCAACTACATGGCCAAACGACTAGAGAAACACTACAGAGTCCTCTTTAGAGGTGCAAGAG acctgcatccaactggccatttgcagttagggatttgcttccttccttagATGATGGGTGGAAAGGGCCTTAAAGAGTCACAAGAGTCCACCATTTTGAATGCAAACTACATGTCAAA---ACTAGAGGAACATTACAGGGTACTGTTTAGGGGGGCTAGGGgtaaagagttatgcaagccgcctttctgattggagatggatagcaatccg Alignment from Exonerate_protein2genome ATGATGGGTGGAAAGGGCCTCAAAGAAGCCACAGAAATCGCCATTCTAAATGCCAACTACATGGCCAAACGACTAGAGAAACACTACAGAGTCCTCTTTAGAGGTGCAAGAG acctgcatccaactggccatttgcagttagggatttgcttccttccttagATGATGGGTGGAAAGGGCCTTAAAGAGTCACAAGAGTCCACCATTTTGAATGCAAACTACATGTCAAAA---CTAGAGGAACATTACAGGGTACTGTTTAGGGGGGCTAGGGgtaaagagttatgcaagccgcctttctgattggagatggatagcaatccg Alignment from Exonerate_coding2genome acctgcatccaactggccatttgcagttagggatttgcttccttccttagatgatgggtggaaagggccttaaagagtcacaagagtccaccattttgaatgcaaactacatgtcaaaactagaggaacattacagggtactgtttaggggggctaggggtaaagagttatgcaagccgcctttctgattggagatggatagcaatccg Alignment from GeneWise ATGATGGGTGGAAAGGGCCTCAAAGAAGCCACAGAAATCGCCATTCTAAATGCCAACTACATGGCCAAACGACTAGAGAAACACTACAGAGTCCTCTTTAGAGGTGCAAGAG acctgcatccaactggccatttgcagttagggatttgcttccttccttagATGATGGGTGGAAAGGGCCTTAAAGAGTCACAAGAGTCCACCATTTTGAATGCAAACTACATGTCAAAA---CTAGAGGAACATTACAGGGTACTGTTTAGGGGGGCTAGGGgtaaagagttatgcaagccgcctttctgattggagatggatagcaatccg #### Gldc_ID6398_17 --> 0 - 0 Original Alignment GTCTGTCTCATTCCTAAGTCAGCACATGGAACGAATCCAGCAAGCGCTCACATGGCGGGCATGAAGATCCAGCCTGTGGAGGTGGACAGATACGGGAACATCGATGTGGCTCACCTCAAGGCCATG agtgttaagaggggtgttatttatgatggggtgttctgtatctccttcagGTGTGTCTTATACCAAATTCAGCTCATGGAACAAATTCAGCTAGTGCTCATATGGCAGGCATGAAAATCCAGCCAGTGGTGGTTGACAGGCATGGGAACATTGATGTGGCTCACCTCATGGCCATGgtaagtcatggccatggtcatcttcattatcatctgagattaaaagctta Alignment from CESAR GTCTGTCTCATTCCTAAGTCAGCACATGGAACGAATCCAGCAAGCGCTCACATGGCGGGCATGAAGATCCAGCCTGTGGAGGTGGACAGATACGGGAACATCGATGTGGCTCACCTCAAGGCCATG agtgttaagaggggtgttatttatgatggggtgttctgtatctccttcagGTGTGTCTTATACCAAATTCAGCTCATGGAACAAATTCAGCTAGTGCTCATATGGCAGGCATGAAAATCCAGCCAGTGGTGGTTGACAGGCATGGGAACATTGATGTGGCTCACCTCATGGCCATGgtaagtcatggccatggtcatcttcattatcatctgagattaaaagctta Alignment from Spaln_aa2Genome GTCTGTCTCATTCCTAAGTCAGCACATGGAACGAATCCAGCAAGCGCTCACATGGCGGGCATGAAGATCCAGCCTGTGGAGGTGGACAGATACGGGAACATCGATGTGGCTCACCTCAAGGCCATG agtgttaagaggggtgttatttatgatggggtgttctgtatctccttcagGTGTGTCTTATACCAAATTCAGCTCATGGAACAAATTCAGCTAGTGCTCATATGGCAGGCATGAAAATCCAGCCAGTGGTGGTTGACAGGCATGGGAACATTGATGTGGCTCACCTCATGGCCATGgtaagtcatggccatggtcatcttcattatcatctgagattaaaagctta Alignment from Spaln_nt2Genome GTCTGTCTCATTCCTAAGTCAGCACATGGAACGAATCCAGCAAGCGCTCACATGGCGGGCATGAAGATCCAGCCTGTGGAGGTGGACAGATACGGGAACATCGATGTGGCTCACCTCAAGGCCATG agtgttaagaggggtgttatttatgatggggtgttctgtatctccttcagGTGTGTCTTATACCAAATTCAGCTCATGGAACAAATTCAGCTAGTGCTCATATGGCAGGCATGAAAATCCAGCCAGTGGTGGTTGACAGGCATGGGAACATTGATGTGGCTCACCTCATGGCCATGgtaagtcatggccatggtcatcttcattatcatctgagattaaaagctta Alignment from Pairagon GTCTGTCTCATTCCTAAGTCAGCACATGGAACGAATCCAGCAAGCGCTCACATGGCGGGCATGAAGATCCAGCCTGTGGAGGTGGACAGATACGGGAACATCGATGTGGCTCACCTCAAGGCCATG agtgttaagaggggtgttatttatgatggggtgttctgtatctccttcagGTGTGTCTTATACCAAATTCAGCTCATGGAACAAATTCAGCTAGTGCTCATATGGCAGGCATGAAAATCCAGCCAGTGGTGGTTGACAGGCATGGGAACATTGATGTGGCTCACCTCATGGCCATGgtaagtcatggccatggtcatcttcattatcatctgagattaaaagctta Alignment from Exonerate_protein2genome GTCTGTCTCATTCCTAAGTCAGCACATGGAACGAATCCAGCAAGCGCTCACATGGCGGGCATGAAGATCCAGCCTGTGGAGGTGGACAGATACGGGAACATCGATGTGGCTCACCTCAAGGCCATG agtgttaagaggggtgttatttatgatggggtgttctgtatctccttcagGTGTGTCTTATACCAAATTCAGCTCATGGAACAAATTCAGCTAGTGCTCATATGGCAGGCATGAAAATCCAGCCAGTGGTGGTTGACAGGCATGGGAACATTGATGTGGCTCACCTCATGGCCATGgtaagtcatggccatggtcatcttcattatcatctgagattaaaagctta Alignment from Exonerate_coding2genome GTCTGTCTCATTCCTAAGTCAGCACATGGAACGAATCCAGCAAGCGCTCACATGGCGGGCATGAAGATCCAGCCTGTGGAGGTGGACAGATACGGGAACATCGATGTGGCTCACCTCAAGGCCATG agtgttaagaggggtgttatttatgatggggtgttctgtatctccttcagGTGTGTCTTATACCAAATTCAGCTCATGGAACAAATTCAGCTAGTGCTCATATGGCAGGCATGAAAATCCAGCCAGTGGTGGTTGACAGGCATGGGAACATTGATGTGGCTCACCTCATGGCCATGgtaagtcatggccatggtcatcttcattatcatctgagattaaaagctta Alignment from GeneWise GTCTGTCTCATTCCTAAGTCAGCACATGGAACGAATCCAGCAAGCGCTCACATGGCGGGCATGAAGATCCAGCCTGTGGAGGTGGACAGATACGGGAACATCGATGTGGCTCACCTCAAGGCCATG agtgttaagaggggtgttatttatgatggggtgttctgtatctccttcagGTGTGTCTTATACCAAATTCAGCTCATGGAACAAATTCAGCTAGTGCTCATATGGCAGGCATGAAAATCCAGCCAGTGGTGGTTGACAGGCATGGGAACATTGATGTGGCTCACCTCATGGCCATGgtaagtcatggccatggtcatcttcattatcatctgagattaaaagctta #### Gldc_ID6411_4 --> 1 - 2 Original Alignment gGTCACCCAGTACACTCCGTATCAGCCAGAGGTGTCCCAGGGGAGGCTGGAGAGTTTACTCAACTACCAGACCATGGTGTCTGACATCACAGGCTTGGACATGGCCAACGCTTCCCTGCTGGATGAGGCAACCGCGGCTGCAGAGGCGATGCAACTGTGCCACag caaaactggttttagagtaattcatgatcactgttcaatgttttccccaggGTTACCCAGTATACCCCTTACAAGCCAGAGGTGTCCGAGGGTAGGCTTGAGAGTCTACTCAACCACCAGACCATGGTGTCTGATATCACTGGCCTAGACATGGCAAATGCTTCCTTGCTTGATGAATCAACAGCAGCTGCTGAGGCAATCCAACTGTGTCACaggtgaggggcggtgtaggagagtctgccaagcaccaggaccctctgtcgga Alignment from CESAR gGTCACCCAGTACACTCCGTATCAGCCAGAGGTGTCCCAGGGGAGGCTGGAGAGTTTACTCAACTACCAGACCATGGTGTCTGACATCACAGGCTTGGACATGGCCAACGCTTCCCTGCTGGATGAGGCAACCGCGGCTGCAGAGGCGATGCAACTGTGCCACag caaaactggttttagagtaattcatgatcactgttcaatgttttccccaggGTTACCCAGTATACCCCTTACAAGCCAGAGGTGTCCGAGGGTAGGCTTGAGAGTCTACTCAACCACCAGACCATGGTGTCTGATATCACTGGCCTAGACATGGCAAATGCTTCCTTGCTTGATGAATCAACAGCAGCTGCTGAGGCAATCCAACTGTGTCACaggtgaggggcggtgtaggagagtctgccaagcaccaggaccctctgtcgga Alignment from Spaln_aa2Genome GGTCACCCAGTACACTCCGTATCAGCCAGAGGTGTCCCAGGGGAGGCTGGAGAGTTTACTCAACTACCAGACCATGGTGTCTGACATCACAGGCTTGGACATGGCCAACGCTTCCCTGCTGGATGAGGCAACCGCGGCTGCAGAGGCGATGCAACTGTGCCACAG caaaactggttttagagtaattcatgatcactgttcaatgttttccccagGGTTACCCAGTATACCCCTTACAAGCCAGAGGTGTCCGAGGGTAGGCTTGAGAGTCTACTCAACCACCAGACCATGGTGTCTGATATCACTGGCCTAGACATGGCAAATGCTTCCTTGCTTGATGAATCAACAGCAGCTGCTGAGGCAATCCAACTGTGTCACAGgtgaggggcggtgtaggagagtctgccaagcaccaggaccctctgtcgga Alignment from Spaln_nt2Genome GGTCACCCAGTACACTCCGTATCAGCCAGAGGTGTCCCAGGGGAGGCTGGAGAGTTTACTCAACTACCAGACCATGGTGTCTGACATCACAGGCTTGGACATGGCCAACGCTTCCCTGCTGGATGAGGCAACCGCGGCTGCAGAGGCGATGCAACTGTGCCACAG caaaactggttttagagtaattcatgatcactgttcaatgttttccccagGGTTACCCAGTATACCCCTTACAAGCCAGAGGTGTCCGAGGGTAGGCTTGAGAGTCTACTCAACCACCAGACCATGGTGTCTGATATCACTGGCCTAGACATGGCAAATGCTTCCTTGCTTGATGAATCAACAGCAGCTGCTGAGGCAATCCAACTGTGTCACAGgtgaggggcggtgtaggagagtctgccaagcaccaggaccctctgtcgga Alignment from Pairagon GGTCACCCAGTACACTCCGTATCAGCCAGAGGTGTCCCAGGGGAGGCTGGAGAGTTTACTCAACTACCAGACCATGGTGTCTGACATCACAGGCTTGGACATGGCCAACGCTTCCCTGCTGGATGAGGCAACCGCGGCTGCAGAGGCGATGCAACTGTGCCACAG caaaactggttttagagtaattcatgatcactgttcaatgttttccccagGGTTACCCAGTATACCCCTTACAAGCCAGAGGTGTCCGAGGGTAGGCTTGAGAGTCTACTCAACCACCAGACCATGGTGTCTGATATCACTGGCCTAGACATGGCAAATGCTTCCTTGCTTGATGAATCAACAGCAGCTGCTGAGGCAATCCAACTGTGTCACAGgtgaggggcggtgtaggagagtctgccaagcaccaggaccctctgtcgga Alignment from Exonerate_protein2genome GGTCACCCAGTACACTCCGTATCAGCCAGAGGTGTCCCAGGGGAGGCTGGAGAGTTTACTCAACTACCAGACCATGGTGTCTGACATCACAGGCTTGGACATGGCCAACGCTTCCCTGCTGGATGAGGCAACCGCGGCTGCAGAGGCGATGCAACTGTGCCACAG caaaactggttttagagtaattcatgatcactgttcaatgttttccccagGGTTACCCAGTATACCCCTTACAAGCCAGAGGTGTCCGAGGGTAGGCTTGAGAGTCTACTCAACCACCAGACCATGGTGTCTGATATCACTGGCCTAGACATGGCAAATGCTTCCTTGCTTGATGAATCAACAGCAGCTGCTGAGGCAATCCAACTGTGTCACAGgtgaggggcggtgtaggagagtctgccaagcaccaggaccctctgtcgga Alignment from Exonerate_coding2genome GGTCACCCAGTACACTCCGTATCAGCCAGAGGTGTCCCAGGGGAGGCTGGAGAGTTTACTCAACTACCAGACCATGGTGTCTGACATCACAGGCTTGGACATGGCCAACGCTTCCCTGCTGGATGAGGCAACCGCGGCTGCAGAGGCGATGCAACTGTGCCACAG caaaactggttttagagtaattcatgatcactgttcaatgttttccccagGGTTACCCAGTATACCCCTTACAAGCCAGAGGTGTCCGAGGGTAGGCTTGAGAGTCTACTCAACCACCAGACCATGGTGTCTGATATCACTGGCCTAGACATGGCAAATGCTTCCTTGCTTGATGAATCAACAGCAGCTGCTGAGGCAATCCAACTGTGTCACAGgtgaggggcggtgtaggagagtctgccaagcaccaggaccctctgtcgga Alignment from GeneWise GGTCACCCAGTACACTCCGTATCAGCCAGAGGTGTCCCAGGGGAGGCTGGAGAGTTTACTCAACTACCAGACCATGGTGTCTGACATCACAGGCTTGGACATGGCCAACGCTTCCCTGCTGGATGAGGCAACCGCGGCTGCAGAGGCGATGCAACTGTGCCACAG caaaactggttttagagtaattcatgatcactgttcaatgttttccccagGGTTACCCAGTATACCCCTTACAAGCCAGAGGTGTCCGAGGGTAGGCTTGAGAGTCTACTCAACCACCAGACCATGGTGTCTGATATCACTGGCCTAGACATGGCAAATGCTTCCTTGCTTGATGAATCAACAGCAGCTGCTGAGGCAATCCAACTGTGTCACAGgtgaggggcggtgtaggagagtctgccaagcaccaggaccctctgtcgga #### Glyat_ID3429_2 --> 0 - 0 Original Alignment GTTTATGGGACCGTCTATCACATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAACACAGTGGTTGTCCGCCCTCAAGAACAG agctgctaaacagggggaattccccagacccacctgcatcttccccacagGTTTACGGGACTGTCTATCATATGATCCATGGGAACCCTTTCAATGTAAAGGCCCTAGTTGACAAGTGGCCAGACTTTAACATAGTTGTAGTTCGCCCTCAAGAACAAgttggtgcatatggcatggagcatacaatcctctagactagcatttctgc Alignment from CESAR GTTTATGGGACCGTCTATCACATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAACACAGTGGTTGTCCGCCCTCAAGAACAG agctgctaaacagggggaattccccagacccacctgcatcttccccacagGTTTACGGGACTGTCTATCATATGATCCATGGGAACCCTTTCAATGTAAAGGCCCTAGTTGACAAGTGGCCAGACTTTAACATAGTTGTAGTTCGCCCTCAAGAACAAgttggtgcatatggcatggagcatacaatcctctagactagcatttctgc Alignment from Spaln_aa2Genome GTTTATGGGACCGTCTATCACATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAACACAGTGGTTGTCCGCCCTCAAGAACAG agctgctaaacagggggaattccccagacccacctgcatcttccccacagGTTTACGGGACTGTCTATCATATGATCCATGGGAACCCTTTCAATGTAAAGGCCCTAGTTGACAAGTGGCCAGACTTTAACATAGTTGTAGTTCGCCCTCAAGAACAAgttggtgcatatggcatggagcatacaatcctctagactagcatttctgc Alignment from Spaln_nt2Genome GTTTATGGGACCGTCTATCACATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAACACAGTGGTTGTCCGCCCTCAAGAACAG agctgctaaacagggggaattccccagacccacctgcatcttccccacagGTTTACGGGACTGTCTATCATATGATCCATGGGAACCCTTTCAATGTAAAGGCCCTAGTTGACAAGTGGCCAGACTTTAACATAGTTGTAGTTCGCCCTCAAGAACAAgttggtgcatatggcatggagcatacaatcctctagactagcatttctgc Alignment from Pairagon GTTTATGGGACCGTCTATCACATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAACACAGTGGTTGTCCGCCCTCAAGAACAG agctgctaaacagggggaattccccagacccacctgcatcttccccacagGTTTACGGGACTGTCTATCATATGATCCATGGGAACCCTTTCAATGTAAAGGCCCTAGTTGACAAGTGGCCAGACTTTAACATAGTTGTAGTTCGCCCTCAAGAACAAgttggtgcatatggcatggagcatacaatcctctagactagcatttctgc Alignment from Exonerate_protein2genome GTTTATGGGACCGTCTATCACATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAACACAGTGGTTGTCCGCCCTCAAGAACAG agctgctaaacagggggaattccccagacccacctgcatcttccccacagGTTTACGGGACTGTCTATCATATGATCCATGGGAACCCTTTCAATGTAAAGGCCCTAGTTGACAAGTGGCCAGACTTTAACATAGTTGTAGTTCGCCCTCAAGAACAAgttggtgcatatggcatggagcatacaatcctctagactagcatttctgc Alignment from Exonerate_coding2genome GTTTATGGGACCGTCTATCACATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAACACAGTGGTTGTCCGCCCTCAAGAACAG agctgctaaacagggggaattccccagacccacctgcatcttccccacagGTTTACGGGACTGTCTATCATATGATCCATGGGAACCCTTTCAATGTAAAGGCCCTAGTTGACAAGTGGCCAGACTTTAACATAGTTGTAGTTCGCCCTCAAGAACAAgttggtgcatatggcatggagcatacaatcctctagactagcatttctgc Alignment from GeneWise GTTTATGGGACCGTCTATCACATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAACACAGTGGTTGTCCGCCCTCAAGAACAG agctgctaaacagggggaattccccagacccacctgcatcttccccacagGTTTACGGGACTGTCTATCATATGATCCATGGGAACCCTTTCAATGTAAAGGCCCTAGTTGACAAGTGGCCAGACTTTAACATAGTTGTAGTTCGCCCTCAAGAACAAgttggtgcatatggcatggagcatacaatcctctagactagcatttctgc #### Gna14_ID4045_4 --> 1 - 2 Original Alignment tTACCTGACGGACATTGAGCGTATCGCCATGCCCTCTTTCGTGCCAACACAACAGGATGTGCTTCGTGTTAGAGTGCCCACCACTGGCATCATAGAATATCCATTCGACCTGGAAAACATCATCTTCcg tgagcctccttcaaatagggccttggcattaaaaattgatgtctctgcagtTACCTAACGGACATTGAGCGTAATGCCATGCCCTCTTTTGTGCCCACACAACAGGATGTTCTCCGGGTTCGTGTACCTACCAGTGGCGTTATAGAATATCCATCTGACTTGGAAAACATTATATATcggtaaaactatttgtaggataacaacctatttgtaggataacatttctttg Alignment from CESAR tTACCTGACGGACATTGAGCGTATCGCCATGCCCTCTTTCGTGCCAACACAACAGGATGTGCTTCGTGTTAGAGTGCCCACCACTGGCATCATAGAATATCCATTCGACCTGGAAAACATCATCTTCcg tgagcctccttcaaatagggccttggcattaaaaattgatgtctctgcagtTACCTAACGGACATTGAGCGTAATGCCATGCCCTCTTTTGTGCCCACACAACAGGATGTTCTCCGGGTTCGTGTACCTACCAGTGGCGTTATAGAATATCCATCTGACTTGGAAAACATTATATATcggtaaaactatttgtaggataacaacctatttgtaggataacatttctttg Alignment from Spaln_aa2Genome TTACCTGACGGACATTGAGCGTATCGCCATGCCCTCTTTCGTGCCAACACAACAGGATGTGCTTCGTGTTAGAGTGCCCACCACTGGCATCATAGAATATCCATTCGACCTGGAAAACATCATCTTCCG tgagcctccttcaaatagggccttggcattaaaaattgatgtctctgcagTTACCTAACGGACATTGAGCGTAATGCCATGCCCTCTTTTGTGCCCACACAACAGGATGTTCTCCGGGTTCGTGTACCTACCAGTGGCGTTATAGAATATCCATCTGACTTGGAAAACATTATATATCGgtaaaactatttgtaggataacaacctatttgtaggataacatttctttg Alignment from Spaln_nt2Genome TTACCTGACGGACATTGAGCGTATCGCCATGCCCTCTTTCGTGCCAACACAACAGGATGTGCTTCGTGTTAGAGTGCCCACCACTGGCATCATAGAATATCCATTCGACCTGGAAAACATCATCTTCCG tgagcctccttcaaatagggccttggcattaaaaattgatgtctctgcagTTACCTAACGGACATTGAGCGTAATGCCATGCCCTCTTTTGTGCCCACACAACAGGATGTTCTCCGGGTTCGTGTACCTACCAGTGGCGTTATAGAATATCCATCTGACTTGGAAAACATTATATATCGgtaaaactatttgtaggataacaacctatttgtaggataacatttctttg Alignment from Pairagon TTACCTGACGGACATTGAGCGTATCGCCATGCCCTCTTTCGTGCCAACACAACAGGATGTGCTTCGTGTTAGAGTGCCCACCACTGGCATCATAGAATATCCATTCGACCTGGAAAACATCATCTTCCG tgagcctccttcaaatagggccttggcattaaaaattgatgtctctgcagTTACCTAACGGACATTGAGCGTAATGCCATGCCCTCTTTTGTGCCCACACAACAGGATGTTCTCCGGGTTCGTGTACCTACCAGTGGCGTTATAGAATATCCATCTGACTTGGAAAACATTATATATCGgtaaaactatttgtaggataacaacctatttgtaggataacatttctttg Alignment from Exonerate_protein2genome TTACCTGACGGACATTGAGCGTATCGCCATGCCCTCTTTCGTGCCAACACAACAGGATGTGCTTCGTGTTAGAGTGCCCACCACTGGCATCATAGAATATCCATTCGACCTGGAAAACATCATCTTCCG tgagcctccttcaaatagggccttggcattaaaaattgatgtctctgcagTTACCTAACGGACATTGAGCGTAATGCCATGCCCTCTTTTGTGCCCACACAACAGGATGTTCTCCGGGTTCGTGTACCTACCAGTGGCGTTATAGAATATCCATCTGACTTGGAAAACATTATATATCGgtaaaactatttgtaggataacaacctatttgtaggataacatttctttg Alignment from Exonerate_coding2genome TTACCTGACGGACATTGAGCGTATCGCCATGCCCTCTTTCGTGCCAACACAACAGGATGTGCTTCGTGTTAGAGTGCCCACCACTGGCATCATAGAATATCCATTCGACCTGGAAAACATCATCTTCCG tgagcctccttcaaatagggccttggcattaaaaattgatgtctctgcagTTACCTAACGGACATTGAGCGTAATGCCATGCCCTCTTTTGTGCCCACACAACAGGATGTTCTCCGGGTTCGTGTACCTACCAGTGGCGTTATAGAATATCCATCTGACTTGGAAAACATTATATATCGgtaaaactatttgtaggataacaacctatttgtaggataacatttctttg Alignment from GeneWise TTACCTGACGGACATTGAGCGTATCGCCATGCCCTCTTTCGTGCCAACACAACAGGATGTGCTTCGTGTTAGAGTGCCCACCACTGGCATCATAGAATATCCATTCGACCTGGAAAACATCATCTTCCG tgagcctccttcaaatagggccttggcattaaaaattgatgtctctgcagTTACCTAACGGACATTGAGCGTAATGCCATGCCCTCTTTTGTGCCCACACAACAGGATGTTCTCCGGGTTCGTGTACCTACCAGTGGCGTTATAGAATATCCATCTGACTTGGAAAACATTATATATCGgtaaaactatttgtaggataacaacctatttgtaggataacatttctttg #### Gnaq_ID4029_4 --> 1 - 2 Original Alignment cTATCTGAATGACTTGGACCGTGTAGCCGACCCTTCCTATCTGCCTACACAACAAGACGTGCTTAGAGTTCGAGTCCCCACTACAGGGATCATCGAATACCCCTTTGACTTACAAAGTGTCATTTTCag taattccttgtcatgagacaagggtatcagacactcgattcttcttccagcTATTTGAATGAGTTAGACCGTTTAGCTGACCCTTCCTATCTTCCAACACAACAAGATGTGCTTAGAGTCTGTGTCCCCACCACAGGGATCATTGAGTATCCCTTTGACCTACAAAGTGTTATAATTaggtaagactagtctttaggtagcaccaaatcagcaaagttcttattaaagt Alignment from CESAR cTATCTGAATGACTTGGACCGTGTAGCCGACCCTTCCTATCTGCCTACACAACAAGACGTGCTTAGAGTTCGAGTCCCCACTACAGGGATCATCGAATACCCCTTTGACTTACAAAGTGTCATTTTCag taattccttgtcatgagacaagggtatcagacactcgattcttcttccagcTATTTGAATGAGTTAGACCGTTTAGCTGACCCTTCCTATCTTCCAACACAACAAGATGTGCTTAGAGTCTGTGTCCCCACCACAGGGATCATTGAGTATCCCTTTGACCTACAAAGTGTTATAATTaggtaagactagtctttaggtagcaccaaatcagcaaagttcttattaaagt Alignment from Spaln_aa2Genome CTATCTGAATGACTTGGACCGTGTAGCCGACCCTTCCTATCTGCCTACACAACAAGACGTGCTTAGAGTTCGAGTCCCCACTACAGGGATCATCGAATACCCCTTTGACTTACAAAGTGTCATTTTCAG taattccttgtcatgagacaagggtatcagacactcgattcttcttccagCTATTTGAATGAGTTAGACCGTTTAGCTGACCCTTCCTATCTTCCAACACAACAAGATGTGCTTAGAGTCTGTGTCCCCACCACAGGGATCATTGAGTATCCCTTTGACCTACAAAGTGTTATAATTAGgtaagactagtctttaggtagcaccaaatcagcaaagttcttattaaagt Alignment from Spaln_nt2Genome CTATCTGAATGACTTGGACCGTGTAGCCGACCCTTCCTATCTGCCTACACAACAAGACGTGCTTAGAGTTCGAGTCCCCACTACAGGGATCATCGAATACCCCTTTGACTTACAAAGTGTCATTTTCAG taattccttgtcatgagacaagggtatcagacactcgattcttcttccagCTATTTGAATGAGTTAGACCGTTTAGCTGACCCTTCCTATCTTCCAACACAACAAGATGTGCTTAGAGTCTGTGTCCCCACCACAGGGATCATTGAGTATCCCTTTGACCTACAAAGTGTTATAATTAGgtaagactagtctttaggtagcaccaaatcagcaaagttcttattaaagt Alignment from Pairagon CTATCTGAATGACTTGGACCGTGTAGCCGACCCTTCCTATCTGCCTACACAACAAGACGTGCTTAGAGTTCGAGTCCCCACTACAGGGATCATCGAATACCCCTTTGACTTACAAAGTGTCATTTTCAG taattccttgtcatgagacaagggtatcagacactcgattcttcttccagCTATTTGAATGAGTTAGACCGTTTAGCTGACCCTTCCTATCTTCCAACACAACAAGATGTGCTTAGAGTCTGTGTCCCCACCACAGGGATCATTGAGTATCCCTTTGACCTACAAAGTGTTATAATTAGgtaagactagtctttaggtagcaccaaatcagcaaagttcttattaaagt Alignment from Exonerate_protein2genome CTATCTGAATGACTTGGACCGTGTAGCCGACCCTTCCTATCTGCCTACACAACAAGACGTGCTTAGAGTTCGAGTCCCCACTACAGGGATCATCGAATACCCCTTTGACTTACAAAGTGTCATTTTCAG taattccttgtcatgagacaagggtatcagacactcgattcttcttccagCTATTTGAATGAGTTAGACCGTTTAGCTGACCCTTCCTATCTTCCAACACAACAAGATGTGCTTAGAGTCTGTGTCCCCACCACAGGGATCATTGAGTATCCCTTTGACCTACAAAGTGTTATAATTAGgtaagactagtctttaggtagcaccaaatcagcaaagttcttattaaagt Alignment from Exonerate_coding2genome CTATCTGAATGACTTGGACCGTGTAGCCGACCCTTCCTATCTGCCTACACAACAAGACGTGCTTAGAGTTCGAGTCCCCACTACAGGGATCATCGAATACCCCTTTGACTTACAAAGTGTCATTTTCAG taattccttgtcatgagacaagggtatcagacactcgattcttcttccagCTATTTGAATGAGTTAGACCGTTTAGCTGACCCTTCCTATCTTCCAACACAACAAGATGTGCTTAGAGTCTGTGTCCCCACCACAGGGATCATTGAGTATCCCTTTGACCTACAAAGTGTTATAATTAGgtaagactagtctttaggtagcaccaaatcagcaaagttcttattaaagt Alignment from GeneWise CTATCTGAATGACTTGGACCGTGTAGCCGACCCTTCCTATCTGCCTACACAACAAGACGTGCTTAGAGTTCGAGTCCCCACTACAGGGATCATCGAATACCCCTTTGACTTACAAAGTGTCATTTTCAG taattccttgtcatgagacaagggtatcagacactcgattcttcttccagCTATTTGAATGAGTTAGACCGTTTAGCTGACCCTTCCTATCTTCCAACACAACAAGATGTGCTTAGAGTCTGTGTCCCCACCACAGGGATCATTGAGTATCCCTTTGACCTACAAAGTGTTATAATTAGgtaagactagtctttaggtagcaccaaatcagcaaagttcttattaaagt #### Gnaq_ID4030_5 --> 1 - 0 Original Alignment aATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGACAATGAG tcatttaacacacaatagtggtgtttaggtgtacattataacttttatagaATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCACTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGATAATGAGgtgagtttgatcaataattaagtacttcaccaattgaggtattcagaaaa Alignment from CESAR aATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGACAATGAG tcatttaacacacaatagtggtgtttaggtgtacattataacttttatagaATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCACTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGATAATGAGgtgagtttgatcaataattaagtacttcaccaattgaggtattcagaaaa Alignment from Spaln_aa2Genome AATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGACAATGAG tcatttaacacacaatagtggtgtttaggtgtacattataacttttatagAATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCACTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGATAATGAGgtgagtttgatcaataattaagtacttcaccaattgaggtattcagaaaa Alignment from Spaln_nt2Genome AATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGACAATGAG tcatttaacacacaatagtggtgtttaggtgtacattataacttttatagAATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCACTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGATAATGAGgtgagtttgatcaataattaagtacttcaccaattgaggtattcagaaaa Alignment from Pairagon AATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGACAATGAG tcatttaacacacaatagtggtgtttaggtgtacattataacttttatagAATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCACTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGATAATGAGgtgagtttgatcaataattaagtacttcaccaattgaggtattcagaaaa Alignment from Exonerate_protein2genome AATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGACAATGAG tcatttaacacacaatagtggtgtttaggtgtacattataacttttatagAATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCACTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGATAATGAGgtgagtttgatcaataattaagtacttcaccaattgaggtattcagaaaa Alignment from Exonerate_coding2genome AATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGACAATGAG tcatttaacacacaatagtggtgtttaggtgtacattataacttttatagAATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCACTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGATAATGAGgtgagtttgatcaataattaagtacttcaccaattgaggtattcagaaaa Alignment from GeneWise AATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGACAATGAG tcatttaacacacaatagtggtgtttaggtgtacattataacttttatagAATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCACTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGATAATGAGgtgagtttgatcaataattaagtacttcaccaattgaggtattcagaaaa #### Got1_ID8748_7 --> 2 - 2 Original Alignment atGAGAGAGTGGGGAATCTGACCGTGGTCGGAAAAGAGTCTGACAGCGTCCTGCGGGTCCTTTCCCAGATGGAGAAGATTGTACGAATCACCTGGTCCAATCCCCCAGCCCAAGGAGCTCGGATTGTGGCCGCCACCCTCTCTGACCCGGAGCTCTTTAAGGAGtg ggactgtgtcacaggtcctgaacctgttgtttcttctctcttcctctcagatGGAAGAGTTGGAAATCTAACTGTGGTGGGAAAAGAATCTGACAGTGTATTGCGGGTTCTTTCCCAGATGAAGAAGGTTGTACGCATCACCTGGTCCAATCCCCCAGCCCAAGGAGCCCGGATTGTAGCTGCTACCCTTTCTGATCCTGAGTTGTTTAAAGAAtggtaagtaaagcctccaatcttgagacaacattcagttgtcccatctctag Alignment from CESAR atGAGAGAGTGGGGAATCTGACCGTGGTCGGAAAAGAGTCTGACAGCGTCCTGCGGGTCCTTTCCCAGATGGAGAAGATTGTACGAATCACCTGGTCCAATCCCCCAGCCCAAGGAGCTCGGATTGTGGCCGCCACCCTCTCTGACCCGGAGCTCTTTAAGGAGtg ggactgtgtcacaggtcctgaacctgttgtttcttctctcttcctctcagatGGAAGAGTTGGAAATCTAACTGTGGTGGGAAAAGAATCTGACAGTGTATTGCGGGTTCTTTCCCAGATGAAGAAGGTTGTACGCATCACCTGGTCCAATCCCCCAGCCCAAGGAGCCCGGATTGTAGCTGCTACCCTTTCTGATCCTGAGTTGTTTAAAGAAtggtaagtaaagcctccaatcttgagacaacattcagttgtcccatctctag Alignment from Spaln_aa2Genome ATGAGAGAGTGGGGAATCTGACCGTGGTCGGAAAAGAGTCTGACAGCGTCCTGCGGGTCCTTTCCCAGATGGAGAAGATTGTACGAATCACCTGGTCCAATCCCCCAGCCCAAGGAGCTCGGATTGTGGCCGCCACCCTCTCTGACCCGGAGCTCTTTAAGGAGTG ggactgtgtcacaggtcctgaacctgttgtttcttctctcttcctctcagATGGAAGAGTTGGAAATCTAACTGTGGTGGGAAAAGAATCTGACAGTGTATTGCGGGTTCTTTCCCAGATGAAGAAGGTTGTACGCATCACCTGGTCCAATCCCCCAGCCCAAGGAGCCCGGATTGTAGCTGCTACCCTTTCTGATCCTGAGTTGTTTAAAGAATGgtaagtaaagcctccaatcttgagacaacattcagttgtcccatctctag Alignment from Spaln_nt2Genome ATGAGAGAGTGGGGAATCTGACCGTGGTCGGAAAAGAGTCTGACAGCGTCCTGCGGGTCCTTTCCCAGATGGAGAAGATTGTACGAATCACCTGGTCCAATCCCCCAGCCCAAGGAGCTCGGATTGTGGCCGCCACCCTCTCTGACCCGGAGCTCTTTAAGGAGTG ggactgtgtcacaggtcctgaacctgttgtttcttctctcttcctctcagATGGAAGAGTTGGAAATCTAACTGTGGTGGGAAAAGAATCTGACAGTGTATTGCGGGTTCTTTCCCAGATGAAGAAGGTTGTACGCATCACCTGGTCCAATCCCCCAGCCCAAGGAGCCCGGATTGTAGCTGCTACCCTTTCTGATCCTGAGTTGTTTAAAGAATGgtaagtaaagcctccaatcttgagacaacattcagttgtcccatctctag Alignment from Pairagon ATGAGAGAGTGGGGAATCTGACCGTGGTCGGAAAAGAGTCTGACAGCGTCCTGCGGGTCCTTTCCCAGATGGAGAAGATTGTACGAATCACCTGGTCCAATCCCCCAGCCCAAGGAGCTCGGATTGTGGCCGCCACCCTCTCTGACCCGGAGCTCTTTAAGGAGTG ggactgtgtcacaggtcctgaacctgttgtttcttctctcttcctctcagATGGAAGAGTTGGAAATCTAACTGTGGTGGGAAAAGAATCTGACAGTGTATTGCGGGTTCTTTCCCAGATGAAGAAGGTTGTACGCATCACCTGGTCCAATCCCCCAGCCCAAGGAGCCCGGATTGTAGCTGCTACCCTTTCTGATCCTGAGTTGTTTAAAGAATGgtaagtaaagcctccaatcttgagacaacattcagttgtcccatctctag Alignment from Exonerate_protein2genome ATGAGAGAGTGGGGAATCTGACCGTGGTCGGAAAAGAGTCTGACAGCGTCCTGCGGGTCCTTTCCCAGATGGAGAAGATTGTACGAATCACCTGGTCCAATCCCCCAGCCCAAGGAGCTCGGATTGTGGCCGCCACCCTCTCTGACCCGGAGCTCTTTAAGGAGTG ggactgtgtcacaggtcctgaacctgttgtttcttctctcttcctctcagATGGAAGAGTTGGAAATCTAACTGTGGTGGGAAAAGAATCTGACAGTGTATTGCGGGTTCTTTCCCAGATGAAGAAGGTTGTACGCATCACCTGGTCCAATCCCCCAGCCCAAGGAGCCCGGATTGTAGCTGCTACCCTTTCTGATCCTGAGTTGTTTAAAGAATGgtaagtaaagcctccaatcttgagacaacattcagttgtcccatctctag Alignment from Exonerate_coding2genome ATGAGAGAGTGGGGAATCTGACCGTGGTCGGAAAAGAGTCTGACAGCGTCCTGCGGGTCCTTTCCCAGATGGAGAAGATTGTACGAATCACCTGGTCCAATCCCCCAGCCCAAGGAGCTCGGATTGTGGCCGCCACCCTCTCTGACCCGGAGCTCTTTAAGGAGTG ggactgtgtcacaggtcctgaacctgttgtttcttctctcttcctctcagATGGAAGAGTTGGAAATCTAACTGTGGTGGGAAAAGAATCTGACAGTGTATTGCGGGTTCTTTCCCAGATGAAGAAGGTTGTACGCATCACCTGGTCCAATCCCCCAGCCCAAGGAGCCCGGATTGTAGCTGCTACCCTTTCTGATCCTGAGTTGTTTAAAGAATGgtaagtaaagcctccaatcttgagacaacattcagttgtcccatctctag Alignment from GeneWise ATGAGAGAGTGGGGAATCTGACCGTGGTCGGAAAAGAGTCTGACAGCGTCCTGCGGGTCCTTTCCCAGATGGAGAAGATTGTACGAATCACCTGGTCCAATCCCCCAGCCCAAGGAGCTCGGATTGTGGCCGCCACCCTCTCTGACCCGGAGCTCTTTAAGGAGTG ggactgtgtcacaggtcctgaacctgttgtttcttctctcttcctctcagATGGAAGAGTTGGAAATCTAACTGTGGTGGGAAAAGAATCTGACAGTGTATTGCGGGTTCTTTCCCAGATGAAGAAGGTTGTACGCATCACCTGGTCCAATCCCCCAGCCCAAGGAGCCCGGATTGTAGCTGCTACCCTTTCTGATCCTGAGTTGTTTAAAGAATGgtaagtaaagcctccaatcttgagacaacattcagttgtcccatctctag #### Got1_ID8749_6 --> 0 - 1 Original Alignment CGCCGTTTTCTGTTCCCCTTCTTTGACTCAGCCTATCAGGGCTTTGCATCTGGAGACCTAGAGAAAGATGCGTGGGCTATTCGCTATTTTGTGTCTGAAGGCTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAAGAACTTCGGGCTCTACa ggaaggccccgtcacatctggacaccgccttttgcccctggacccctcagTGCCGTTTTCTGTTCCCATACTTTGACTCAGCCTACCAGGGCTTTGCTGCTGCAGACTCGGAAAAAGATGCATGGGCAGTTCACTTTTTTGAATCTGAAGACTTCCAGCTTTTCTGG------TCCTTTACCAGGAACTCTGGGCTATATagtaagtactgtggagtgtgttaatactgtacctctccaggtccagggact Alignment from CESAR CGCCGTTTTCTGTTCCCCTTCTTTGACTCAGCCTATCAGGGCTTTGCATCTGGAGACCTAGAGAAAGATGCGTGGGCTATTCGCTATTTTGTGTCTGAAGGCTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAAGAACTTCGGGCTCTACa ggaaggccccgtcacatctggacaccgccttttgcccctggacccctcagTGCCGTTTTCTGTTCCCATACTTTGACTCAGCCTACCAGGGCTTTGCTGCTGCAGACTCGGAAAAAGATGCATGGGCAGTTCACTTTTTTGAATCTGAAGACTTCCAGCTTTTCTGG------TCCTTTACCAGGAACTCTGGGCTATATagtaagtactgtggagtgtgttaatactgtacctctccaggtccagggact Alignment from Spaln_aa2Genome CGCCGTTTTCTGTTCCCCTTCTTTGACTCAGCCTATCAGGGCTTTGCATCTGGAGACCTAGAGAAAGATGCGTGGGCTATTCGCTATTTTGTGTCTGAAGGCTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAAGAACTTCGGGCTCTACA ggaaggccccgtcacatctggacaccgccttttgcccctggacccctcagTGCCGTTTTCTGTTCCCATACTTTGACTCAGCCTACCAGGGCTTTGCTGCTGCAGACTCGGAAAAAGATGCATGGGCAGTTCACTTTTTTGAATCTGAAGACTTCCAGCTTTTCTGG------TCCTTTACCAGGAACTCTGGGCTATATAgtaagtactgtggagtgtgttaatactgtacctctccaggtccagggact Alignment from Spaln_nt2Genome CGCCGTTTTCTGTTCCCCTTCTTTGACTCAGCCTATCAGGGCTTTGCATCTGGAGACCTAGAGAAAGATGCGTGGGCTATTCGCTATTTTGTGTCTGAAGGCTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAAGAACTTCGGGCTCTACA ggaaggccccgtcacatctggacaccgccttttgcccctggacccctcagTGCCGTTTTCTGTTCCCATACTTTGACTCAGCCTACCAGGGCTTTGCTGCTGCAGACTCGGAAAAAGATGCATGGGCAGTTCACTTTTTTGAATCTGAAGACTTCCAGCTTTTCTG------GTCCTTTACCAGGAACTCTGGGCTATATAgtaagtactgtggagtgtgttaatactgtacctctccaggtccagggact Alignment from Pairagon CGCCGTTTTCTGTTCCCCTTCTTTGACTCAGCCTATCAGGGCTTTGCATCTGGAGACCTAGAGAAAGATGCGTGGGCTATTCGCTATTTTGTGTCTGAAGGCTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAAGAACTTCGGGCTCTACA ggaaggccccgtcacatctggacaccgccttttgcccctggacccctcagTGCCGTTTTCTGTTCCCATACTTTGACTCAGCCTACCAGGGCTTTGCTGCTGCAGACTCGGAAAAAGATGCATGGGCAGTTCACTTTTTTGAATCTGAAGACTTCCAGCTTTTCTG------GTCCTTTACCAGGAACTCTGGGCTATATAgtaagtactgtggagtgtgttaatactgtacctctccaggtccagggact Alignment from Exonerate_protein2genome CGCCGTTTTCTGTTCCCCTTCTTTGACTCAGCCTATCAGGGCTTTGCATCTGGAGACCTAGAGAAAGATGCGTGGGCTATTCGCTATTTTGTGTCTGAAGGCTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAAGAACTTCGGGCTCTACA ggaaggccccgtcacatctggacaccgccttttgcccctggacccctcagTGCCGTTTTCTGTTCCCATACTTTGACTCAGCCTACCAGGGCTTTGCTGCTGCAGACTCGGAAAAAGATGCATGGGCAGTTCACTTTTTTGAATCTGAAGACTTCCAGCTTTTC------TGGTCCTTTACCAGGAACTCTGGGCTATATAgtaagtactgtggagtgtgttaatactgtacctctccaggtccagggact Alignment from Exonerate_coding2genome CGCCGTTTTCTGTTCCCCTTCTTTGACTCAGCCTATCAGGGCTTTGCATCTGGAGACCTAGAGAAAGATGCGTGGGCTATTCGCTATTTTGTGTCTGAAGGCTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAAGAACTTCGGGCTCTACA ggaaggccccgtcacatctggacaccgccttttgcccctggacccctcagTGCCGTTTTCTGTTCCCATACTTTGACTCAGCCTACCAGGGCTTTGCTGCTGCAGACTCGGAAAAAGATGCATGGGCAGTTCACTTTTTTGAATCTGAAGACTTCCAGCTTTTC------TGGTCCTTTACCAGGAACTCTGGGCTATATAgtaagtactgtggagtgtgttaatactgtacctctccaggtccagggact Alignment from GeneWise CGCCGTTTTCTGTTCCCCTTCTTTGACTCAGCCTATCAGGGCTTTGCATCTGGAGACCTAGAGAAAGATGCGTGGGCTATTCGCTATTTTGTGTCTGAAGGCTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAAGAACTTCGGGCTCTACA ggaaggccccgtcacatctggacaccgccttttgcccctggacccctcagTGCCGTTTTCTGTTCCCATACTTTGACTCAGCCTACCAGGGCTTTGCTGCTGCAGACTCGGAAAAAGATGCATGGGCAGTTCACTTTTTTGAATCTGAAGACTTCCAGCTTTTC------TGGTCCTTTACCAGGAACTCTGGGCTATATAgtaagtactgtggagtgtgttaatactgtacctctccaggtccagggact #### Got1_ID8750_5 --> 0 - 0 Original Alignment AATGCCCCCGAGTTCTCCATCTTTGTCCTCCATGCCTGTGCGCACAACCCAACAGGGACCGACCCGACTCCAGAGCAGTGGAAGCAGATCGCTGCTGTCATGCAG tgactgttataacgcagtttattaaacagttttcttctctcttcatggagAATGCCCCAGAGTTCTCTATCTTTGTCCTCCATGCTTGTGCACACAACCCATCAAGAAGTGACCCAACTCCAGAGCAGTGGAAGCACATTGCCGCTGCCATGCAAgtgagtattgctgagagcaattccgttgggtcattatatttgcataaagt Alignment from CESAR AATGCCCCCGAGTTCTCCATCTTTGTCCTCCATGCCTGTGCGCACAACCCAACAGGGACCGACCCGACTCCAGAGCAGTGGAAGCAGATCGCTGCTGTCATGCAG tgactgttataacgcagtttattaaacagttttcttctctcttcatggagAATGCCCCAGAGTTCTCTATCTTTGTCCTCCATGCTTGTGCACACAACCCATCAAGAAGTGACCCAACTCCAGAGCAGTGGAAGCACATTGCCGCTGCCATGCAAgtgagtattgctgagagcaattccgttgggtcattatatttgcataaagt Alignment from Spaln_aa2Genome AATGCCCCCGAGTTCTCCATCTTTGTCCTCCATGCCTGTGCGCACAACCCAACAGGGACCGACCCGACTCCAGAGCAGTGGAAGCAGATCGCTGCTGTCATGCAG tgactgttataacgcagtttattaaacagttttcttctctcttcatggagAATGCCCCAGAGTTCTCTATCTTTGTCCTCCATGCTTGTGCACACAACCCATCAAGAAGTGACCCAACTCCAGAGCAGTGGAAGCACATTGCCGCTGCCATGCAAgtgagtattgctgagagcaattccgttgggtcattatatttgcataaagt Alignment from Spaln_nt2Genome AATGCCCCCGAGTTCTCCATCTTTGTCCTCCATGCCTGTGCGCACAACCCAACAGGGACCGACCCGACTCCAGAGCAGTGGAAGCAGATCGCTGCTGTCATGCAG tgactgttataacgcagtttattaaacagttttcttctctcttcatggagAATGCCCCAGAGTTCTCTATCTTTGTCCTCCATGCTTGTGCACACAACCCATCAAGAAGTGACCCAACTCCAGAGCAGTGGAAGCACATTGCCGCTGCCATGCAAgtgagtattgctgagagcaattccgttgggtcattatatttgcataaagt Alignment from Pairagon AATGCCCCCGAGTTCTCCATCTTTGTCCTCCATGCCTGTGCGCACAACCCAACAGGGACCGACCCGACTCCAGAGCAGTGGAAGCAGATCGCTGCTGTCATGCAG tgactgttataacgcagtttattaaacagttttcttctctcttcatggagAATGCCCCAGAGTTCTCTATCTTTGTCCTCCATGCTTGTGCACACAACCCATCAAGAAGTGACCCAACTCCAGAGCAGTGGAAGCACATTGCCGCTGCCATGCAAgtgagtattgctgagagcaattccgttgggtcattatatttgcataaagt Alignment from Exonerate_protein2genome AATGCCCCCGAGTTCTCCATCTTTGTCCTCCATGCCTGTGCGCACAACCCAACAGGGACCGACCCGACTCCAGAGCAGTGGAAGCAGATCGCTGCTGTCATGCAG tgactgttataacgcagtttattaaacagttttcttctctcttcatggagAATGCCCCAGAGTTCTCTATCTTTGTCCTCCATGCTTGTGCACACAACCCATCAAGAAGTGACCCAACTCCAGAGCAGTGGAAGCACATTGCCGCTGCCATGCAAgtgagtattgctgagagcaattccgttgggtcattatatttgcataaagt Alignment from Exonerate_coding2genome AATGCCCCCGAGTTCTCCATCTTTGTCCTCCATGCCTGTGCGCACAACCCAACAGGGACCGACCCGACTCCAGAGCAGTGGAAGCAGATCGCTGCTGTCATGCAG tgactgttataacgcagtttattaaacagttttcttctctcttcatggagAATGCCCCAGAGTTCTCTATCTTTGTCCTCCATGCTTGTGCACACAACCCATCAAGAAGTGACCCAACTCCAGAGCAGTGGAAGCACATTGCCGCTGCCATGCAAgtgagtattgctgagagcaattccgttgggtcattatatttgcataaagt Alignment from GeneWise AATGCCCCCGAGTTCTCCATCTTTGTCCTCCATGCCTGTGCGCACAACCCAACAGGGACCGACCCGACTCCAGAGCAGTGGAAGCAGATCGCTGCTGTCATGCAG tgactgttataacgcagtttattaaacagttttcttctctcttcatggagAATGCCCCAGAGTTCTCTATCTTTGTCCTCCATGCTTGTGCACACAACCCATCAAGAAGTGACCCAACTCCAGAGCAGTGGAAGCACATTGCCGCTGCCATGCAAgtgagtattgctgagagcaattccgttgggtcattatatttgcataaagt #### Got1_ID8752_3 --> 0 - 1 Original Alignment GTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGCGCTCTTCGGATTGGAGCTGACTTCTTAGGGCGATGGTACAATGGTACAGATAACAAGAACACACCAATCTACGTATCATCACCAACCTGGg gttaatactctcaaaagaagagaatagtccctcattctgatctctctaagGTTGGAGGTGTACAGTCTTTGGGGGGGTCAGGTGCCCTTAGGATTGGATCTGATTTTTTT------TGGCATAATGGGACAGATAACAAGAATACAACGATCTACATATCTGCACCCACTTGGggtaagcgatgtgctctcgcttaaaagatcatctgtcttaaaaatcagagg Alignment from CESAR GTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGCGCTCTTCGGATTGGAGCTGACTTCTTAGGGCGATGGTACAATGGTACAGATAACAAGAACACACCAATCTACGTATCATCACCAACCTGGg gttaatactctcaaaagaagagaatagtccctcattctgatctctctaagGTTGGAGGTGTACAGTCTTTGGGGGGGTCAGGTGCCCTTAGGATTGGATCTGATTTTTTT------TGGCATAATGGGACAGATAACAAGAATACAACGATCTACATATCTGCACCCACTTGGggtaagcgatgtgctctcgcttaaaagatcatctgtcttaaaaatcagagg Alignment from Spaln_aa2Genome GTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGCGCTCTTCGGATTGGAGCTGACTTCTTAGGGCGATGGTACAATGGTACAGATAACAAGAACACACCAATCTACGTATCATCACCAACCTGGG gttaatactctcaaaagaagagaatagtccctcattctgatctctctaagGTTGGAGGTGTACAGTCTTTGGGGGGGTCAGGTGCCCTTAGGATTGGATCTGATTTTTTT------TGGCATAATGGGACAGATAACAAGAATACAACGATCTACATATCTGCACCCACTTGGGgtaagcgatgtgctctcgcttaaaagatcatctgtcttaaaaatcagagg Alignment from Spaln_nt2Genome GTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGCGCTCTTCGGATTGGAGCTGACTTCTTAGGGCGATGGTACAATGGTACAGATAACAAGAACACACCAATCTACGTATCATCACCAACCTGGG gttaatactctcaaaagaagagaatagtccctcattctgatctctctaagGTTGGAGGTGTACAGTCTTTGGGGGGGTCAGGTGCCCTTAGGATTGGATCTGATTTTTT------TTGGCATAATGGGACAGATAACAAGAATACAACGATCTACATATCTGCACCCACTTGGGgtaagcgatgtgctctcgcttaaaagatcatctgtcttaaaaatcagagg Alignment from Pairagon GTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGCGCTCTTCGGATTGGAGCTGACTTCTTAGGGCGATGGTACAATGGTACAGATAACAAGAACACACCAATCTACGTATCATCACCAACCTGGG gttaatactctcaaaagaagagaatagtccctcattctgatctctctaagGTTGGAGGTGTACAGTCTTTGGGGGGGTCAGGTGCCCTTAGGATTGGATCTGATTTTTT------TTGGCATAATGGGACAGATAACAAGAATACAACGATCTACATATCTGCACCCACTTGGGgtaagcgatgtgctctcgcttaaaagatcatctgtcttaaaaatcagagg Alignment from Exonerate_protein2genome GTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGCGCTCTTCGGATTGGAGCTGACTTCTTAGGGCGATGGTACAATGGTACAGATAACAAGAACACACCAATCTACGTATCATCACCAACCTGGG gttaatactctcaaaagaagagaatagtccctcattctgatctctctaagGTTGGAGGTGTACAGTCTTTGGGGGGGTCAGGTGCCCTTAGGATTGGATCTGATTTTTTT------TGGCATAATGGGACAGATAACAAGAATACAACGATCTACATATCTGCACCCACTTGGGgtaagcgatgtgctctcgcttaaaagatcatctgtcttaaaaatcagagg Alignment from Exonerate_coding2genome GTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGCGCTCTTCGGATTGGAGCTGACTTCTTAGGGCGATGGTACAATGGTACAGATAACAAGAACACACCAATCTACGTATCATCACCAACCTGGG gttaatactctcaaaagaagagaatagtccctcattctgatctctctaagGTTGGAGGTGTACAGTCTTTGGGGGGGTCAGGTGCCCTTAGGATTGGATCTGATTTTTTT------TGGCATAATGGGACAGATAACAAGAATACAACGATCTACATATCTGCACCCACTTGGGgtaagcgatgtgctctcgcttaaaagatcatctgtcttaaaaatcagagg Alignment from GeneWise GTTGGAGGGGTGCAGTCTTTGGGAGGGACAGGCGCTCTTCGGATTGGAGCTGACTTCTTAGGGCGATGGTACAATGGTACAGATAACAAGAACACACCAATCTACGTATCATCACCAACCTGGG gttaatactctcaaaagaagagaatagtccctcattctgatctctctaagGTTGGAGGTGTACAGTCTTTGGGGGGGTCAGGTGCCCTTAGGATTGGATCTGATTTTTTT------TGGCATAATGGGACAGATAACAAGAATACAACGATCTACATATCTGCACCCACTTGGGgtaagcgatgtgctctcgcttaaaagatcatctgtcttaaaaatcagagg #### Gpam_ID11531_18 --> 0 - 1 Original Alignment GTGAGCCAGTCCAAGGAGCACCAGCAATTCATCACCTTTCTTCAGAGGCTTCTAGGTCCCCTGCTAGAAGCCTACAGCTCTGCTGCCATCTTTGTCCACAACTTCAGCGGTCCAGTTCCCGAGTCTGAGTACCTGCAGAAACTGCACAGGTACCTTATCACCAGGACGGAAAGGAACGTTGCCGTGTACg tccttatgcaattaatcagtatgaaaggcccagacttattgcccttgcagGTCAGCCAGTCCAAGGAGCATCAGCAGTTCATCCCCTCTCTTCAGAGGCTTCTGGGACCCCTATTGGAAGCCTACAGCTCTGGTGTCATTTTTGTCCATAACTTCAGTGGGCCTGTACCTGAATCCGAGTAC---CAAAAGCTTCATAGGTACCTTATCTCACGGACAGAAAGGAATATTGCTGTGTATggtgaggtggtcacaatacacccaactatgatgtagacttttcatggtcag Alignment from CESAR GTGAGCCAGTCCAAGGAGCACCAGCAATTCATCACCTTTCTTCAGAGGCTTCTAGGTCCCCTGCTAGAAGCCTACAGCTCTGCTGCCATCTTTGTCCACAACTTCAGCGGTCCAGTTCCCGAGTCTGAGTACCTGCAGAAACTGCACAGGTACCTTATCACCAGGACGGAAAGGAACGTTGCCGTGTACg tccttatgcaattaatcagtatgaaaggcccagacttattgcccttgcagGTCAGCCAGTCCAAGGAGCATCAGCAGTTCATCCCCTCTCTTCAGAGGCTTCTGGGACCCCTATTGGAAGCCTACAGCTCTGGTGTCATTTTTGTCCATAACTTCAGTGGGCCTGTACCTGAATCCGAGTAC---CAAAAGCTTCATAGGTACCTTATCTCACGGACAGAAAGGAATATTGCTGTGTATggtgaggtggtcacaatacacccaactatgatgtagacttttcatggtcag Alignment from Spaln_aa2Genome GTGAGCCAGTCCAAGGAGCACCAGCAATTCATCACCTTTCTTCAGAGGCTTCTAGGTCCCCTGCTAGAAGCCTACAGCTCTGCTGCCATCTTTGTCCACAACTTCAGCGGTCCAGTTCCCGAGTCTGAGTACCTGCAGAAACTGCACAGGTACCTTATCACCAGGACGGAAAGGAACGTTGCCGTGTACG tccttatgcaattaatcagtatgaaaggcccagacttattgcccttgcagGTCAGCCAGTCCAAGGAGCATCAGCAGTTCATCCCCTCTCTTCAGAGGCTTCTGGGACCCCTATTGGAAGCCTACAGCTCTGGTGTCATTTTTGTCCATAACTTCAGTGGGCCTGTACCTGAATCCGAGTAC---CAAAAGCTTCATAGGTACCTTATCTCACGGACAGAAAGGAATATTGCTGTGTATGgtgaggtggtcacaatacacccaactatgatgtagacttttcatggtcag Alignment from Spaln_nt2Genome GTGAGCCAGTCCAAGGAGCACCAGCAATTCATCACCTTTCTTCAGAGGCTTCTAGGTCCCCTGCTAGAAGCCTACAGCTCTGCTGCCATCTTTGTCCACAACTTCAGCGGTCCAGTTCCCGAGTCTGAGTACCTGCAGAAACTGCACAGGTACCTTATCACCAGGACGGAAAGGAACGTTGCCGTGTACG tccttatgcaattaatcagtatgaaaggcccagacttattgcccttgcagGTCAGCCAGTCCAAGGAGCATCAGCAGTTCATCCCCTCTCTTCAGAGGCTTCTGGGACCCCTATTGGAAGCCTACAGCTCTGGTGTCATTTTTGTCCATAACTTCAGTGGGCCTGTACCTGAATCCGAGTAC---CAAAAGCTTCATAGGTACCTTATCTCACGGACAGAAAGGAATATTGCTGTGTATGgtgaggtggtcacaatacacccaactatgatgtagacttttcatggtcag Alignment from Pairagon GTGAGCCAGTCCAAGGAGCACCAGCAATTCATCACCTTTCTTCAGAGGCTTCTAGGTCCCCTGCTAGAAGCCTACAGCTCTGCTGCCATCTTTGTCCACAACTTCAGCGGTCCAGTTCCCGAGTCTGAGTACCTGCAGAAACTGCACAGGTACCTTATCACCAGGACGGAAAGGAACGTTGCCGTGTACG tccttatgcaattaatcagtatgaaaggcccagacttattgcccttgcagGTCAGCCAGTCCAAGGAGCATCAGCAGTTCATCCCCTCTCTTCAGAGGCTTCTGGGACCCCTATTGGAAGCCTACAGCTCTGGTGTCATTTTTGTCCATAACTTCAGTGGGCCTGTACCTGAATCCGAGTAC---CAAAAGCTTCATAGGTACCTTATCTCACGGACAGAAAGGAATATTGCTGTGTATGgtgaggtggtcacaatacacccaactatgatgtagacttttcatggtcag Alignment from Exonerate_protein2genome GTGAGCCAGTCCAAGGAGCACCAGCAATTCATCACCTTTCTTCAGAGGCTTCTAGGTCCCCTGCTAGAAGCCTACAGCTCTGCTGCCATCTTTGTCCACAACTTCAGCGGTCCAGTTCCCGAGTCTGAGTACCTGCAGAAACTGCACAGGTACCTTATCACCAGGACGGAAAGGAACGTTGCCGTGTACG tccttatgcaattaatcagtatgaaaggcccagacttattgcccttgcagGTCAGCCAGTCCAAGGAGCATCAGCAGTTCATCCCCTCTCTTCAGAGGCTTCTGGGACCCCTATTGGAAGCCTACAGCTCTGGTGTCATTTTTGTCCATAACTTCAGTGGGCCTGTACCTGAATCCGAGTAC---CAAAAGCTTCATAGGTACCTTATCTCACGGACAGAAAGGAATATTGCTGTGTATGgtgaggtggtcacaatacacccaactatgatgtagacttttcatggtcag Alignment from Exonerate_coding2genome tccttatgcaattaatcagtatgaaaggcccagacttattgcccttgcaggtcagccagtccaaggagcatcagcagttcatcccctctcttcagaggcttctgggacccctattggaagcctacagctctggtgtcatttttgtccataacttcagtgggcctgtacctgaatccgagtaccaaaagcttcataggtaccttatctcacggacagaaaggaatattgctgtgtatggtgaggtggtcacaatacacccaactatgatgtagacttttcatggtcag Alignment from GeneWise GTGAGCCAGTCCAAGGAGCACCAGCAATTCATCACCTTTCTTCAGAGGCTTCTAGGTCCCCTGCTAGAAGCCTACAGCTCTGCTGCCATCTTTGTCCACAACTTCAGCGGTCCAGTTCCCGAGTCTGAGTACCTGCAGAAACTGCACAGGTACCTTATCACCAGGACGGAAAGGAACGTTGCCGTGTACG tccttatgcaattaatcagtatgaaaggcccagacttattgcccttgcagGTCAGCCAGTCCAAGGAGCATCAGCAGTTCATCCCCTCTCTTCAGAGGCTTCTGGGACCCCTATTGGAAGCCTACAGCTCTGGTGTCATTTTTGTCCATAACTTCAGTGGGCCTGTACCTGAATCCGAGTAC---CAAAAGCTTCATAGGTACCTTATCTCACGGACAGAAAGGAATATTGCTGTGTATGgtgaggtggtcacaatacacccaactatgatgtagacttttcatggtcag #### Gpam_ID11534_15 --> 2 - 0 Original Alignment ctTGCAGCATCTATGCAGTCCTGAATAAGAGGTGCTCTGGAGGGTCCGCTGGAGGCCTCGGCAACCTGATCAGCCAGGAGCAGCTGGTGAGGAAGGCCGCCAGCCTGTGCTACCTTCTCTCTAACGAAGGTACCATTTCTCTG atgacggccctagtaggtcttcacgcctacaatttcttttctttttacagctTGCAGTGTATACACAGTCCTAAATAAGAGATGCTCAGGGGGTTTTGCTGGGGGACTTGGCAACCTCATCAGCCAGGAACACCTAGTAAAAAAGGCCACCAGCTTGTGCTACCTACTTTCTAATGAAGGAACCATTTCATTAgtatccggatgaaaggggcctgggggtttcaagctggctcttcatgatgg Alignment from CESAR ctTGCAGCATCTATGCAGTCCTGAATAAGAGGTGCTCTGGAGGGTCCGCTGGAGGCCTCGGCAACCTGATCAGCCAGGAGCAGCTGGTGAGGAAGGCCGCCAGCCTGTGCTACCTTCTCTCTAACGAAGGTACCATTTCTCTG atgacggccctagtaggtcttcacgcctacaatttcttttctttttacagctTGCAGTGTATACACAGTCCTAAATAAGAGATGCTCAGGGGGTTTTGCTGGGGGACTTGGCAACCTCATCAGCCAGGAACACCTAGTAAAAAAGGCCACCAGCTTGTGCTACCTACTTTCTAATGAAGGAACCATTTCATTAgtatccggatgaaaggggcctgggggtttcaagctggctcttcatgatgg Alignment from Spaln_aa2Genome CTTGCAGCATCTATGCAGTCCTGAATAAGAGGTGCTCTGGAGGGTCCGCTGGAGGCCTCGGCAACCTGATCAGCCAGGAGCAGCTGGTGAGGAAGGCCGCCAGCCTGTGCTACCTTCTCTCTAACGAAGGTACCATTTCTCTG atgacggccctagtaggtcttcacgcctacaatttcttttctttttacagCTTGCAGTGTATACACAGTCCTAAATAAGAGATGCTCAGGGGGTTTTGCTGGGGGACTTGGCAACCTCATCAGCCAGGAACACCTAGTAAAAAAGGCCACCAGCTTGTGCTACCTACTTTCTAATGAAGGAACCATTTCATTAgtatccggatgaaaggggcctgggggtttcaagctggctcttcatgatgg Alignment from Spaln_nt2Genome CTTGCAGCATCTATGCAGTCCTGAATAAGAGGTGCTCTGGAGGGTCCGCTGGAGGCCTCGGCAACCTGATCAGCCAGGAGCAGCTGGTGAGGAAGGCCGCCAGCCTGTGCTACCTTCTCTCTAACGAAGGTACCATTTCTCTG atgacggccctagtaggtcttcacgcctacaatttcttttctttttacagCTTGCAGTGTATACACAGTCCTAAATAAGAGATGCTCAGGGGGTTTTGCTGGGGGACTTGGCAACCTCATCAGCCAGGAACACCTAGTAAAAAAGGCCACCAGCTTGTGCTACCTACTTTCTAATGAAGGAACCATTTCATTAgtatccggatgaaaggggcctgggggtttcaagctggctcttcatgatgg Alignment from Pairagon CTTGCAGCATCTATGCAGTCCTGAATAAGAGGTGCTCTGGAGGGTCCGCTGGAGGCCTCGGCAACCTGATCAGCCAGGAGCAGCTGGTGAGGAAGGCCGCCAGCCTGTGCTACCTTCTCTCTAACGAAGGTACCATTTCTCTG atgacggccctagtaggtcttcacgcctacaatttcttttctttttacagCTTGCAGTGTATACACAGTCCTAAATAAGAGATGCTCAGGGGGTTTTGCTGGGGGACTTGGCAACCTCATCAGCCAGGAACACCTAGTAAAAAAGGCCACCAGCTTGTGCTACCTACTTTCTAATGAAGGAACCATTTCATTAgtatccggatgaaaggggcctgggggtttcaagctggctcttcatgatgg Alignment from Exonerate_protein2genome CTTGCAGCATCTATGCAGTCCTGAATAAGAGGTGCTCTGGAGGGTCCGCTGGAGGCCTCGGCAACCTGATCAGCCAGGAGCAGCTGGTGAGGAAGGCCGCCAGCCTGTGCTACCTTCTCTCTAACGAAGGTACCATTTCTCTG atgacggccctagtaggtcttcacgcctacaatttcttttctttttacagCTTGCAGTGTATACACAGTCCTAAATAAGAGATGCTCAGGGGGTTTTGCTGGGGGACTTGGCAACCTCATCAGCCAGGAACACCTAGTAAAAAAGGCCACCAGCTTGTGCTACCTACTTTCTAATGAAGGAACCATTTCATTAgtatccggatgaaaggggcctgggggtttcaagctggctcttcatgatgg Alignment from Exonerate_coding2genome atgacggccctagtaggtcttcacgcctacaatttcttttctttttacagcttgcagtgtatacacagtcctaaataagagatgctcagggggttttgctgggggacttggcaacctcatcagccaggaacacctagtaaaaaaggccaccagcttgtgctacctactttctaatgaaggaaccatttcattagtatccggatgaaaggggcctgggggtttcaagctggctcttcatgatgg Alignment from GeneWise CTTGCAGCATCTATGCAGTCCTGAATAAGAGGTGCTCTGGAGGGTCCGCTGGAGGCCTCGGCAACCTGATCAGCCAGGAGCAGCTGGTGAGGAAGGCCGCCAGCCTGTGCTACCTTCTCTCTAACGAAGGTACCATTTCTCTG atgacggccctagtaggtcttcacgcctacaatttcttttctttttacagCTTGCAGTGTATACACAGTCCTAAATAAGAGATGCTCAGGGGGTTTTGCTGGGGGACTTGGCAACCTCATCAGCCAGGAACACCTAGTAAAAAAGGCCACCAGCTTGTGCTACCTACTTTCTAATGAAGGAACCATTTCATTAgtatccggatgaaaggggcctgggggtttcaagctggctcttcatgatgg #### Gpam_ID11537_12 --> 1 - 1 Original Alignment aCCGAATGATGTTGCTGATGAACATCAAGACCTATCCAGTAACGAGTCCAGAAACCCAGCAGACGAAGCCTTCCGACGAAGGCTGATTGCAAACCTGGCTGAGCACATTCTCTTCa tgtatgaatcgtgacaggttgagtgagggcgtcctatgcactgtcctcagaCCAAATGATGTAGTTGATGAATACCACGATCTGTCCACTAATGAGTCAAGAAACCCAGCAGATGAGGCCTTTTGGAGAAGGTTGATTGAAAACCTAACTGAATGCATTCTTTACagtaagaaaatctggtttctataccaaacacacttactgcctctacaatag Alignment from CESAR aCCGAATGATGTTGCTGATGAACATCAAGACCTATCCAGTAACGAGTCCAGAAACCCAGCAGACGAAGCCTTCCGACGAAGGCTGATTGCAAACCTGGCTGAGCACATTCTCTTCa tgtatgaatcgtgacaggttgagtgagggcgtcctatgcactgtcctcagaCCAAATGATGTAGTTGATGAATACCACGATCTGTCCACTAATGAGTCAAGAAACCCAGCAGATGAGGCCTTTTGGAGAAGGTTGATTGAAAACCTAACTGAATGCATTCTTTACagtaagaaaatctggtttctataccaaacacacttactgcctctacaatag Alignment from Spaln_aa2Genome ACCGAATGATGTTGCTGATGAACATCAAGACCTATCCAGTAACGAGTCCAGAAACCCAGCAGACGAAGCCTTCCGACGAAGGCTGATTGCAAACCTGGCTGAGCACATTCTCTTCA tgtatgaatcgtgacaggttgagtgagggcgtcctatgcactgtcctcagACCAAATGATGTAGTTGATGAATACCACGATCTGTCCACTAATGAGTCAAGAAACCCAGCAGATGAGGCCTTTTGGAGAAGGTTGATTGAAAACCTAACTGAATGCATTCTTTACAgtaagaaaatctggtttctataccaaacacacttactgcctctacaatag Alignment from Spaln_nt2Genome ACCGAATGATGTTGCTGATGAACATCAAGACCTATCCAGTAACGAGTCCAGAAACCCAGCAGACGAAGCCTTCCGACGAAGGCTGATTGCAAACCTGGCTGAGCACATTCTCTTCA tgtatgaatcgtgacaggttgagtgagggcgtcctatgcactgtcctcagACCAAATGATGTAGTTGATGAATACCACGATCTGTCCACTAATGAGTCAAGAAACCCAGCAGATGAGGCCTTTTGGAGAAGGTTGATTGAAAACCTAACTGAATGCATTCTTTACAgtaagaaaatctggtttctataccaaacacacttactgcctctacaatag Alignment from Pairagon ACCGAATGATGTTGCTGATGAACATCAAGACCTATCCAGTAACGAGTCCAGAAACCCAGCAGACGAAGCCTTCCGACGAAGGCTGATTGCAAACCTGGCTGAGCACATTCTCTTCA tgtatgaatcgtgacaggttgagtgagggcgtcctatgcactgtcctcagACCAAATGATGTAGTTGATGAATACCACGATCTGTCCACTAATGAGTCAAGAAACCCAGCAGATGAGGCCTTTTGGAGAAGGTTGATTGAAAACCTAACTGAATGCATTCTTTACAgtaagaaaatctggtttctataccaaacacacttactgcctctacaatag Alignment from Exonerate_protein2genome ACCGAATGATGTTGCTGATGAACATCAAGACCTATCCAGTAACGAGTCCAGAAACCCAGCAGACGAAGCCTTCCGACGAAGGCTGATTGCAAACCTGGCTGAGCACATTCTCTTCA tgtatgaatcgtgacaggttgagtgagggcgtcctatgcactgtcctcagACCAAATGATGTAGTTGATGAATACCACGATCTGTCCACTAATGAGTCAAGAAACCCAGCAGATGAGGCCTTTTGGAGAAGGTTGATTGAAAACCTAACTGAATGCATTCTTTACAgtaagaaaatctggtttctataccaaacacacttactgcctctacaatag Alignment from Exonerate_coding2genome ACCGAATGATGTTGCTGATGAACATCAAGACCTATCCAGTAACGAGTCCAGAAACCCAGCAGACGAAGCCTTCCGACGAAGGCTGATTGCAAACCTGGCTGAGCACATTCTCTTCACCGCCAGCAAGTCCTGCGCTATCATGTCCACCCACATTGTGGCCTGTCTGCTC tgtatgaatcgtgacaggttgagtgagggcgtcctatgcactgtcctcagACCAAATGATGTAGTTGATGAATACCACGATCTGTCCACTAATGAGTCAAGAAACCCAGCAGATGAGGCCTTTTGGAGAAGGTTGATTGAAAACCTAACTGAATGCATTCTTTAC---AGTAAGAAAATCTGGTTTCTATACCAAACACACTTACTGCCTCTACAATAG Alignment from GeneWise ACCGAATGATGTTGCTGATGAACATCAAGACCTATCCAGTAACGAGTCCAGAAACCCAGCAGACGAAGCCTTCCGACGAAGGCTGATTGCAAACCTGGCTGAGCACATTCTCTTCA tgtatgaatcgtgacaggttgagtgagggcgtcctatgcactgtcctcagACCAAATGATGTAGTTGATGAATACCACGATCTGTCCACTAATGAGTCAAGAAACCCAGCAGATGAGGCCTTTTGGAGAAGGTTGATTGAAAACCTAACTGAATGCATTCTTTACAgtaagaaaatctggtttctataccaaacacacttactgcctctacaatag #### Gpam_ID11538_11 --> 0 - 2 Original Alignment GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAag cagggcatgcacattgtacagggttattattatgattttgttttcttcagGAGTACCTAGAAGGACAGGGTCAGAAGCCTGTATCGGCCCCCCTTTCCTTAGAACAGGCACTATTACCAGCAATCCTTCCCTCAaggtgaggatgagtacttcttgggctcagcatattccctaacacacattctt Alignment from CESAR GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAag cagggcatgcacattgtacagggttattattatgattttgttttcttcagGAGTACCTAGAAGGACAGGGTCAGAAGCCTGTATCGGCCCCCCTTTCCTTAGAACAGGCACTATTACCAGCAATCCTTCCCTCAaggtgaggatgagtacttcttgggctcagcatattccctaacacacattctt Alignment from Spaln_aa2Genome GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG cagggcatgcacattgtacagggttattattatgattttgttttcttcagGAGTACCTAGAAGGACAGGGTCAGAAGCCTGTATCGGCCCCCCTTTCCTTAGAACAGGCACTATTACCAGCAATCCTTCCCTCAAGgtgaggatgagtacttcttgggctcagcatattccctaacacacattctt Alignment from Spaln_nt2Genome GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG cagggcatgcacattgtacagggttattattatgattttgttttcttcagGAGTACCTAGAAGGACAGGGTCAGAAGCCTGTATCGGCCCCCCTTTCCTTAGAACAGGCACTATTACCAGCAATCCTTCCCTCAAGgtgaggatgagtacttcttgggctcagcatattccctaacacacattctt Alignment from Pairagon GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG cagggcatgcacattgtacagggttattattatgattttgttttcttcagGAGTACCTAGAAGGACAGGGTCAGAAGCCTGTATCGGCCCCCCTTTCCTTAGAACAGGCACTATTACCAGCAATCCTTCCCTCAAGgtgaggatgagtacttcttgggctcagcatattccctaacacacattctt Alignment from Exonerate_protein2genome GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG cagggcatgcacattgtacagggttattattatgattttgttttcttcagGAGTACCTAGAAGGACAGGGTCAGAAGCCTGTATCGGCCCCCCTTTCCTTAGAACAGGCACTATTACCAGCAATCCTTCCCTCAAGgtgaggatgagtacttcttgggctcagcatattccctaacacacattctt Alignment from Exonerate_coding2genome GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG cagggcatgcacattgtacagggttattattatgattttgttttcttcagGAGTACCTAGAAGGACAGGGTCAGAAGCCTGTATCGGCCCCCCTTTCCTTAGAACAGGCACTATTACCAGCAATCCTTCCCTCAAGgtgaggatgagtacttcttgggctcagcatattccctaacacacattctt Alignment from GeneWise GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG cagggcatgcacattgtacagggttattattatgattttgttttcttcagGAGTACCTAGAAGGACAGGGTCAGAAGCCTGTATCGGCCCCCCTTTCCTTAGAACAGGCACTATTACCAGCAATCCTTCCCTCAAGgtgaggatgagtacttcttgggctcagcatattccctaacacacattctt #### Gpam_ID11539_10 --> 0 - 0 Original Alignment GGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGCGTTATCAGAATGCTGCGGAAAAACTACGGCTACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTGAAG tagggatgcgaatctccagaagtaaatgctgatgctcctctcctctccagGGCAAGCCCAAGAAGAATGAGAGCCTCTGGAGTGTAGCTAGAGGTGTTGTCAAAATGCTGCGTAAAAACTATGGTTATGTCAGAGTGGATTTTGCACAGCCATTTTCACTGAAAgtatgtatatacacaaaggtgcagactcaaacccagagcttgtttgtttt Alignment from CESAR GGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGCGTTATCAGAATGCTGCGGAAAAACTACGGCTACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTGAAG tagggatgcgaatctccagaagtaaatgctgatgctcctctcctctccagGGCAAGCCCAAGAAGAATGAGAGCCTCTGGAGTGTAGCTAGAGGTGTTGTCAAAATGCTGCGTAAAAACTATGGTTATGTCAGAGTGGATTTTGCACAGCCATTTTCACTGAAAgtatgtatatacacaaaggtgcagactcaaacccagagcttgtttgtttt Alignment from Spaln_aa2Genome GGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGCGTTATCAGAATGCTGCGGAAAAACTACGGCTACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTGAAG tagggatgcgaatctccagaagtaaatgctgatgctcctctcctctccagGGCAAGCCCAAGAAGAATGAGAGCCTCTGGAGTGTAGCTAGAGGTGTTGTCAAAATGCTGCGTAAAAACTATGGTTATGTCAGAGTGGATTTTGCACAGCCATTTTCACTGAAAgtatgtatatacacaaaggtgcagactcaaacccagagcttgtttgtttt Alignment from Spaln_nt2Genome GGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGCGTTATCAGAATGCTGCGGAAAAACTACGGCTACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTGAAG tagggatgcgaatctccagaagtaaatgctgatgctcctctcctctccagGGCAAGCCCAAGAAGAATGAGAGCCTCTGGAGTGTAGCTAGAGGTGTTGTCAAAATGCTGCGTAAAAACTATGGTTATGTCAGAGTGGATTTTGCACAGCCATTTTCACTGAAAgtatgtatatacacaaaggtgcagactcaaacccagagcttgtttgtttt Alignment from Pairagon GGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGCGTTATCAGAATGCTGCGGAAAAACTACGGCTACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTGAAG tagggatgcgaatctccagaagtaaatgctgatgctcctctcctctccagGGCAAGCCCAAGAAGAATGAGAGCCTCTGGAGTGTAGCTAGAGGTGTTGTCAAAATGCTGCGTAAAAACTATGGTTATGTCAGAGTGGATTTTGCACAGCCATTTTCACTGAAAgtatgtatatacacaaaggtgcagactcaaacccagagcttgtttgtttt Alignment from Exonerate_protein2genome GGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGCGTTATCAGAATGCTGCGGAAAAACTACGGCTACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTGAAG tagggatgcgaatctccagaagtaaatgctgatgctcctctcctctccagGGCAAGCCCAAGAAGAATGAGAGCCTCTGGAGTGTAGCTAGAGGTGTTGTCAAAATGCTGCGTAAAAACTATGGTTATGTCAGAGTGGATTTTGCACAGCCATTTTCACTGAAAgtatgtatatacacaaaggtgcagactcaaacccagagcttgtttgtttt Alignment from Exonerate_coding2genome GGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGCGTTATCAGAATGCTGCGGAAAAACTACGGCTACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTGAAG tagggatgcgaatctccagaagtaaatgctgatgctcctctcctctccagGGCAAGCCCAAGAAGAATGAGAGCCTCTGGAGTGTAGCTAGAGGTGTTGTCAAAATGCTGCGTAAAAACTATGGTTATGTCAGAGTGGATTTTGCACAGCCATTTTCACTGAAAgtatgtatatacacaaaggtgcagactcaaacccagagcttgtttgtttt Alignment from GeneWise GGAAAGCCCAAGAAGAACGAGAGCCTCTGGAGTGTGGCGAGAGGCGTTATCAGAATGCTGCGGAAAAACTACGGCTACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTGAAG tagggatgcgaatctccagaagtaaatgctgatgctcctctcctctccagGGCAAGCCCAAGAAGAATGAGAGCCTCTGGAGTGTAGCTAGAGGTGTTGTCAAAATGCTGCGTAAAAACTATGGTTATGTCAGAGTGGATTTTGCACAGCCATTTTCACTGAAAgtatgtatatacacaaaggtgcagactcaaacccagagcttgtttgtttt #### Gpam_ID11540_9 --> 0 - 0 Original Alignment CATGTAGTTGAACTCCTCCGACAGCAGCAGTTCCTGGAGATC---TTCCTGGAAGGCACCCGCTCCCGCAGTGGCAAGACCTCCTGTGCCCGGGCAGGGCTCCTCTCAGTGGTAGTGGATACTCTGTCGTCCAACACCATCCCCGACATCCTCGTCATACCCGTGGGCATCTCGTATGATCGCATAATCGAAGGTCACTACAATGGCGAACAGTTG cttgcagagttgttagttccatctccatatttcaaaatatcctttttcagCATGTAGTTGAACTCCTTCAAGAGCAACAATTCCTGGAAATATTGTTTCTAGAAGGGAGTCCCTCTCGTAGTGGAAAGACCTCATGTGCGCAGGAAGGTCTCCTCTCAGTGGTAGTACACACTCTGTCATCCAACACCATACCTGACATCCTAGTCATACGTGTGGGCATCTCTTATGATTGTATAATAGAAGGTCACTACAATGGTGAACAGTTGgtttgtaaatgtatagaatggaatgacaatatttccagatgggtatcctg Alignment from CESAR CATGTAGTTGAACTCCTCCGACAGCAGCAGTTCCTGGAGATC---TTCCTGGAAGGCACCCGCTCCCGCAGTGGCAAGACCTCCTGTGCCCGGGCAGGGCTCCTCTCAGTGGTAGTGGATACTCTGTCGTCCAACACCATCCCCGACATCCTCGTCATACCCGTGGGCATCTCGTATGATCGCATAATCGAAGGTCACTACAATGGCGAACAGTTG cttgcagagttgttagttccatctccatatttcaaaatatcctttttcagCATGTAGTTGAACTCCTTCAAGAGCAACAATTCCTGGAAATATTGTTTCTAGAAGGGAGTCCCTCTCGTAGTGGAAAGACCTCATGTGCGCAGGAAGGTCTCCTCTCAGTGGTAGTACACACTCTGTCATCCAACACCATACCTGACATCCTAGTCATACGTGTGGGCATCTCTTATGATTGTATAATAGAAGGTCACTACAATGGTGAACAGTTGgtttgtaaatgtatagaatggaatgacaatatttccagatgggtatcctg Alignment from Spaln_aa2Genome CATGTAGTTGAACTCCTCCGACAGCAGCAGTTCCTGGAGATC---TTCCTGGAAGGCACCCGCTCCCGCAGTGGCAAGACCTCCTGTGCCCGGGCAGGGCTCCTCTCAGTGGTAGTGGATACTCTGTCGTCCAACACCATCCCCGACATCCTCGTCATACCCGTGGGCATCTCGTATGATCGCATAATCGAAGGTCACTACAATGGCGAACAGTTG cttgcagagttgttagttccatctccatatttcaaaatatcctttttcagCATGTAGTTGAACTCCTTCAAGAGCAACAATTCCTGGAAATATTGTTTCTAGAAGGGAGTCCCTCTCGTAGTGGAAAGACCTCATGTGCGCAGGAAGGTCTCCTCTCAGTGGTAGTACACACTCTGTCATCCAACACCATACCTGACATCCTAGTCATACGTGTGGGCATCTCTTATGATTGTATAATAGAAGGTCACTACAATGGTGAACAGTTGgtttgtaaatgtatagaatggaatgacaatatttccagatgggtatcctg Alignment from Spaln_nt2Genome CATGTAGTTGAACTCCTCCGACAGCAGCAGTTCCTGGAGATCTTC---CTGGAAGGCACCCGCTCCCGCAGTGGCAAGACCTCCTGTGCCCGGGCAGGGCTCCTCTCAGTGGTAGTGGATACTCTGTCGTCCAACACCATCCCCGACATCCTCGTCATACCCGTGGGCATCTCGTATGATCGCATAATCGAAGGTCACTACAATGGCGAACAGTTG cttgcagagttgttagttccatctccatatttcaaaatatcctttttcagCATGTAGTTGAACTCCTTCAAGAGCAACAATTCCTGGAAATATTGTTTCTAGAAGGGAGTCCCTCTCGTAGTGGAAAGACCTCATGTGCGCAGGAAGGTCTCCTCTCAGTGGTAGTACACACTCTGTCATCCAACACCATACCTGACATCCTAGTCATACGTGTGGGCATCTCTTATGATTGTATAATAGAAGGTCACTACAATGGTGAACAGTTGgtttgtaaatgtatagaatggaatgacaatatttccagatgggtatcctg Alignment from Pairagon CATGTAGTTGAACTCCTCCGACAGCAGCAGTTCCTGGAGA---TCTTCCTGGAAGGCACCCGCTCCCGCAGTGGCAAGACCTCCTGTGCCCGGGCAGGGCTCCTCTCAGTGGTAGTGGATACTCTGTCGTCCAACACCATCCCCGACATCCTCGTCATACCCGTGGGCATCTCGTATGATCGCATAATCGAAGGTCACTACAATGGCGAACAGTTG cttgcagagttgttagttccatctccatatttcaaaatatcctttttcagCATGTAGTTGAACTCCTTCAAGAGCAACAATTCCTGGAAATATTGTTTCTAGAAGGGAGTCCCTCTCGTAGTGGAAAGACCTCATGTGCGCAGGAAGGTCTCCTCTCAGTGGTAGTACACACTCTGTCATCCAACACCATACCTGACATCCTAGTCATACGTGTGGGCATCTCTTATGATTGTATAATAGAAGGTCACTACAATGGTGAACAGTTGgtttgtaaatgtatagaatggaatgacaatatttccagatgggtatcctg Alignment from Exonerate_protein2genome CATGTAGTTGAACTCCTCCGACAGCAGCAGTTCCTGGAGATC---TTCCTGGAAGGCACCCGCTCCCGCAGTGGCAAGACCTCCTGTGCCCGGGCAGGGCTCCTCTCAGTGGTAGTGGATACTCTGTCGTCCAACACCATCCCCGACATCCTCGTCATACCCGTGGGCATCTCGTATGATCGCATAATCGAAGGTCACTACAATGGCGAACAGTTG cttgcagagttgttagttccatctccatatttcaaaatatcctttttcagCATGTAGTTGAACTCCTTCAAGAGCAACAATTCCTGGAAATATTGTTTCTAGAAGGGAGTCCCTCTCGTAGTGGAAAGACCTCATGTGCGCAGGAAGGTCTCCTCTCAGTGGTAGTACACACTCTGTCATCCAACACCATACCTGACATCCTAGTCATACGTGTGGGCATCTCTTATGATTGTATAATAGAAGGTCACTACAATGGTGAACAGTTGgtttgtaaatgtatagaatggaatgacaatatttccagatgggtatcctg Alignment from Exonerate_coding2genome CATGTAGTTGAACTCCTCCGACAGCAGCAGTTCCTGGAGATC---TTCCTGGAAGGCACCCGCTCCCGCAGTGGCAAGACCTCCTGTGCCCGGGCAGGGCTCCTCTCAGTGGTAGTGGATACTCTGTCGTCCAACACCATCCCCGACATCCTCGTCATACCCGTGGGCATCTCGTATGATCGCATAATCGAAGGTCACTACAATGGCGAACAGTTG cttgcagagttgttagttccatctccatatttcaaaatatcctttttcagCATGTAGTTGAACTCCTTCAAGAGCAACAATTCCTGGAAATATTGTTTCTAGAAGGGAGTCCCTCTCGTAGTGGAAAGACCTCATGTGCGCAGGAAGGTCTCCTCTCAGTGGTAGTACACACTCTGTCATCCAACACCATACCTGACATCCTAGTCATACGTGTGGGCATCTCTTATGATTGTATAATAGAAGGTCACTACAATGGTGAACAGTTGgtttgtaaatgtatagaatggaatgacaatatttccagatgggtatcctg Alignment from GeneWise CATGTAGTTGAACTCCTCCGACAGCAGCAGTTCCTGGAGATC---TTCCTGGAAGGCACCCGCTCCCGCAGTGGCAAGACCTCCTGTGCCCGGGCAGGGCTCCTCTCAGTGGTAGTGGATACTCTGTCGTCCAACACCATCCCCGACATCCTCGTCATACCCGTGGGCATCTCGTATGATCGCATAATCGAAGGTCACTACAATGGCGAACAGTTG cttgcagagttgttagttccatctccatatttcaaaatatcctttttcagCATGTAGTTGAACTCCTTCAAGAGCAACAATTCCTGGAAATATTGTTTCTAGAAGGGAGTCCCTCTCGTAGTGGAAAGACCTCATGTGCGCAGGAAGGTCTCCTCTCAGTGGTAGTACACACTCTGTCATCCAACACCATACCTGACATCCTAGTCATACGTGTGGGCATCTCTTATGATTGTATAATAGAAGGTCACTACAATGGTGAACAGTTGgtttgtaaatgtatagaatggaatgacaatatttccagatgggtatcctg #### Gpam_ID11544_5 --> 1 - 2 Original Alignment aGTCCAAGAGGCAATTGCTGAAGTGGCTGCGGAGTTGAACCCAGATGGATCTGCCCAGCAGCAGTCCAAAGCCATCCAGAAGGTGAAAAGGAAAGCCAGGAAGATCCTCCAGGAGATGGTCGCCACCGTCTCCCCAGGGATGATCag tttattactaattcttgcaatggcttaccacgtgcttcctttctgtacaggGTTAGTGAAGCAATTGCTGAAGTAGCTGCAGAATTGAACCCAGATGGATCAGCACAACAGCAGTCCAAAGCCATTCTCAAAGTGAAAAGGAAAGCCAGAAGAATTCTTCAAGAAATGGTTGTCAAAGTGGCACCAGGCATGATTaggtactcaagacttagggttgcaagggtgaaggatgtttgctcaagtggat Alignment from CESAR aGTCCAAGAGGCAATTGCTGAAGTGGCTGCGGAGTTGAACCCAGATGGATCTGCCCAGCAGCAGTCCAAAGCCATCCAGAAGGTGAAAAGGAAAGCCAGGAAGATCCTCCAGGAGATGGTCGCCACCGTCTCCCCAGGGATGATCag tttattactaattcttgcaatggcttaccacgtgcttcctttctgtacaggGTTAGTGAAGCAATTGCTGAAGTAGCTGCAGAATTGAACCCAGATGGATCAGCACAACAGCAGTCCAAAGCCATTCTCAAAGTGAAAAGGAAAGCCAGAAGAATTCTTCAAGAAATGGTTGTCAAAGTGGCACCAGGCATGATTaggtactcaagacttagggttgcaagggtgaaggatgtttgctcaagtggat Alignment from Spaln_aa2Genome AGTCCAAGAGGCAATTGCTGAAGTGGCTGCGGAGTTGAACCCAGATGGATCTGCCCAGCAGCAGTCCAAAGCCATCCAGAAGGTGAAAAGGAAAGCCAGGAAGATCCTCCAGGAGATGGTCGCCACCGTCTCCCCAGGGATGATCAG tttattactaattcttgcaatggcttaccacgtgcttcctttctgtacagGGTTAGTGAAGCAATTGCTGAAGTAGCTGCAGAATTGAACCCAGATGGATCAGCACAACAGCAGTCCAAAGCCATTCTCAAAGTGAAAAGGAAAGCCAGAAGAATTCTTCAAGAAATGGTTGTCAAAGTGGCACCAGGCATGATTAGgtactcaagacttagggttgcaagggtgaaggatgtttgctcaagtggat Alignment from Spaln_nt2Genome AGTCCAAGAGGCAATTGCTGAAGTGGCTGCGGAGTTGAACCCAGATGGATCTGCCCAGCAGCAGTCCAAAGCCATCCAGAAGGTGAAAAGGAAAGCCAGGAAGATCCTCCAGGAGATGGTCGCCACCGTCTCCCCAGGGATGATCAG tttattactaattcttgcaatggcttaccacgtgcttcctttctgtacagGGTTAGTGAAGCAATTGCTGAAGTAGCTGCAGAATTGAACCCAGATGGATCAGCACAACAGCAGTCCAAAGCCATTCTCAAAGTGAAAAGGAAAGCCAGAAGAATTCTTCAAGAAATGGTTGTCAAAGTGGCACCAGGCATGATTAGgtactcaagacttagggttgcaagggtgaaggatgtttgctcaagtggat Alignment from Pairagon AGTCCAAGAGGCAATTGCTGAAGTGGCTGCGGAGTTGAACCCAGATGGATCTGCCCAGCAGCAGTCCAAAGCCATCCAGAAGGTGAAAAGGAAAGCCAGGAAGATCCTCCAGGAGATGGTCGCCACCGTCTCCCCAGGGATGATCAG tttattactaattcttgcaatggcttaccacgtgcttcctttctgtacagGGTTAGTGAAGCAATTGCTGAAGTAGCTGCAGAATTGAACCCAGATGGATCAGCACAACAGCAGTCCAAAGCCATTCTCAAAGTGAAAAGGAAAGCCAGAAGAATTCTTCAAGAAATGGTTGTCAAAGTGGCACCAGGCATGATTAGgtactcaagacttagggttgcaagggtgaaggatgtttgctcaagtggat Alignment from Exonerate_protein2genome AGTCCAAGAGGCAATTGCTGAAGTGGCTGCGGAGTTGAACCCAGATGGATCTGCCCAGCAGCAGTCCAAAGCCATCCAGAAGGTGAAAAGGAAAGCCAGGAAGATCCTCCAGGAGATGGTCGCCACCGTCTCCCCAGGGATGATCAG tttattactaattcttgcaatggcttaccacgtgcttcctttctgtacagGGTTAGTGAAGCAATTGCTGAAGTAGCTGCAGAATTGAACCCAGATGGATCAGCACAACAGCAGTCCAAAGCCATTCTCAAAGTGAAAAGGAAAGCCAGAAGAATTCTTCAAGAAATGGTTGTCAAAGTGGCACCAGGCATGATTAGgtactcaagacttagggttgcaagggtgaaggatgtttgctcaagtggat Alignment from Exonerate_coding2genome AGTCCAAGAGGCAATTGCTGAAGTGGCTGCGGAGTTGAACCCAGATGGATCTGCCCAGCAGCAGTCCAAAGCCATCCAGAAGGTGAAAAGGAAAGCCAGGAAGATCCTCCAGGAGATGGTCGCCACCGTCTCCCCAGGGATGATCAG tttattactaattcttgcaatggcttaccacgtgcttcctttctgtacagGGTTAGTGAAGCAATTGCTGAAGTAGCTGCAGAATTGAACCCAGATGGATCAGCACAACAGCAGTCCAAAGCCATTCTCAAAGTGAAAAGGAAAGCCAGAAGAATTCTTCAAGAAATGGTTGTCAAAGTGGCACCAGGCATGATTAGgtactcaagacttagggttgcaagggtgaaggatgtttgctcaagtggat Alignment from GeneWise AGAGGCAATTGCTGAAGTGGCTGCGGAGTTGAACCCAGATGGATCTGCCCAGCAGCAGTCCAAAGCCATCCAGAAGGTGAAAAGGAAAGCCAGGAAGATCCTCCAGGAGATGGTCGCCACCGTCTCCCCAGGGATGATCAG tttattactaattcttgcaatggcttaccacgtgcttcctttctgtacagggttagTGAAGCAATTGCTGAAGTAGCTGCAGAATTGAACCCAGATGGATCAGCACAACAGCAGTCCAAAGCCATTCTCAAAGTGAAAAGGAAAGCCAGAAGAATTCTTCAAGAAATGGTTGTCAAAGTGGCACCAGGCATGATTAGgtactcaagacttagggttgcaagggtgaaggatgtttgctcaagtggat #### Gpr137_ID1889_2 --> 0 - 2 Original Alignment GTGGTGTTCAAGGCCAAGGCGAAGCGTCGGCCAGAGATGAGCCGAGGCtt aggaagggtaagcttacagataaaaaagttgtctcctgcttctcctctagGTGGTATTTAAGGCCAAAGCTAAGCGTCGACCTGTAATGAGCCGGGGActgtgagcgtgatgctaatgtgtcatttcagcgagacaggtgggccctgaca Alignment from CESAR GTGGTGTTCAAGGCCAAGGCGAAGCGTCGGCCAGAGATGAGCCGAGGCtt aggaagggtaagcttacagataaaaaagttgtctcctgcttctcctctagGTGGTATTTAAGGCCAAAGCTAAGCGTCGACCTGTAATGAGCCGGGGActgtgagcgtgatgctaatgtgtcatttcagcgagacaggtgggccctgaca Alignment from Spaln_aa2Genome GTGGTGTTCAAGGCCAAGGCGAAGCGTCGGCCAGAGATGAGCCGAGGCTT aggaagggtaagcttacagataaaaaagttgtctcctgcttctcctctagGTGGTATTTAAGGCCAAAGCTAAGCGTCGACCTGTAATGAGCCGGGGACTgtgagcgtgatgctaatgtgtcatttcagcgagacaggtgggccctgaca Alignment from Spaln_nt2Genome GTGGTGTTCAAGGCCAAGGCGAAGCGTCGGCCAGAGATGAGCCGAGGCTT aggaagggtaagcttacagataaaaaagttgtctcctgcttctcctctagGTGGTATTTAAGGCCAAAGCTAAGCGTCGACCTGTAATGAGCCGGGGACTgtgagcgtgatgctaatgtgtcatttcagcgagacaggtgggccctgaca Alignment from Pairagon GTGGTGTTCAAGGCCAAGGCGAAGCGTCGGCCAGAGATGAGCCGAGGCTT aggaagggtaagcttacagataaaaaagttgtctcctgcttctcctctagGTGGTATTTAAGGCCAAAGCTAAGCGTCGACCTGTAATGAGCCGGGGACTgtgagcgtgatgctaatgtgtcatttcagcgagacaggtgggccctgaca Alignment from Exonerate_protein2genome GTGGTGTTCAAGGCCAAGGCGAAGCGTCGGCCAGAGATGAGCCGAGGCTT aggaagggtaagcttacagataaaaaagttgtctcctgcttctcctctagGTGGTATTTAAGGCCAAAGCTAAGCGTCGACCTGTAATGAGCCGGGGACTgtgagcgtgatgctaatgtgtcatttcagcgagacaggtgggccctgaca Alignment from Exonerate_coding2genome aggaagggtaagcttacagataaaaaagttgtctcctgcttctcctctaggtggtatttaaggccaaagctaagcgtcgacctgtaatgagccggggactgtgagcgtgatgctaatgtgtcatttcagcgagacaggtgggccctgaca Alignment from GeneWise GTGGTGTTCAAGGCCAAGGCGAAGCGTCGGCCAGAGATGAGCCGAGGCTT aggaagggtaagcttacagataaaaaagttgtctcctgcttctcctctagGTGGTATTTAAGGCCAAAGCTAAGCGTCGACCTGTAATGAGCCGGGGACTgtgagcgtgatgctaatgtgtcatttcagcgagacaggtgggccctgaca #### Grk5_ID13413_7 --> 1 - 0 Original Alignment aCAACCAGTGACCAAAAACACTTTCCGGCAGTACCGAGTGCTGGGCAAAGGGGGCTTTGGAGAG aatcctaatccttagtctcagcgtgaagccatgtgtttttaaatttccagaCAACCAGTAACGAAAAATGCTTTCCGGCAGTACCGGGTGCTGGGCAAAGGAGGCTTTGGCGAGgtgagggtataaagacggcatgggattctggtgtgctcatgcctccctag Alignment from CESAR aCAACCAGTGACCAAAAACACTTTCCGGCAGTACCGAGTGCTGGGCAAAGGGGGCTTTGGAGAG aatcctaatccttagtctcagcgtgaagccatgtgtttttaaatttccagaCAACCAGTAACGAAAAATGCTTTCCGGCAGTACCGGGTGCTGGGCAAAGGAGGCTTTGGCGAGgtgagggtataaagacggcatgggattctggtgtgctcatgcctccctag Alignment from Spaln_aa2Genome ACAACCAGTGACCAAAAACACTTTCCGGCAGTACCGAGTGCTGGGCAAAGGGGGCTTTGGAGAG aatcctaatccttagtctcagcgtgaagccatgtgtttttaaatttccagACAACCAGTAACGAAAAATGCTTTCCGGCAGTACCGGGTGCTGGGCAAAGGAGGCTTTGGCGAGgtgagggtataaagacggcatgggattctggtgtgctcatgcctccctag Alignment from Spaln_nt2Genome ACAACCAGTGACCAAAAACACTTTCCGGCAGTACCGAGTGCTGGGCAAAGGGGGCTTTGGAGAG aatcctaatccttagtctcagcgtgaagccatgtgtttttaaatttccagACAACCAGTAACGAAAAATGCTTTCCGGCAGTACCGGGTGCTGGGCAAAGGAGGCTTTGGCGAGgtgagggtataaagacggcatgggattctggtgtgctcatgcctccctag Alignment from Pairagon ACAACCAGTGACCAAAAACACTTTCCGGCAGTACCGAGTGCTGGGCAAAGGGGGCTTTGGAGAG aatcctaatccttagtctcagcgtgaagccatgtgtttttaaatttccagACAACCAGTAACGAAAAATGCTTTCCGGCAGTACCGGGTGCTGGGCAAAGGAGGCTTTGGCGAGgtgagggtataaagacggcatgggattctggtgtgctcatgcctccctag Alignment from Exonerate_protein2genome ACAACCAGTGACCAAAAACACTTTCCGGCAGTACCGAGTGCTGGGCAAAGGGGGCTTTGGAGAG aatcctaatccttagtctcagcgtgaagccatgtgtttttaaatttccagACAACCAGTAACGAAAAATGCTTTCCGGCAGTACCGGGTGCTGGGCAAAGGAGGCTTTGGCGAGgtgagggtataaagacggcatgggattctggtgtgctcatgcctccctag Alignment from Exonerate_coding2genome ACAACCAGTGACCAAAAACACTTTCCGGCAGTACCGAGTGCTGGGCAAAGGGGGCTTTGGAGAG aatcctaatccttagtctcagcgtgaagccatgtgtttttaaatttccagACAACCAGTAACGAAAAATGCTTTCCGGCAGTACCGGGTGCTGGGCAAAGGAGGCTTTGGCGAGgtgagggtataaagacggcatgggattctggtgtgctcatgcctccctag Alignment from GeneWise ACAACCAGTGACCAAAAACACTTTCCGGCAGTACCGAGTGCTGGGCAAAGGGGGCTTTGGAGAG aatcctaatccttagtctcagcgtgaagccatgtgtttttaaatttccagACAACCAGTAACGAAAAATGCTTTCCGGCAGTACCGGGTGCTGGGCAAAGGAGGCTTTGGCGAGgtgagggtataaagacggcatgggattctggtgtgctcatgcctccctag #### Grk5_ID13420_13 --> 0 - 0 Original Alignment CTGCTCACCAAAGACTCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCCGCCGAGGTCAAGAGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTCGTTCCAGAT ctgtttcttttgttcatcagttcatctggttaactgcaattccttcacagGTGCTTACAGAAGAATCAGAGCAGCGGCTTGGCTGCCAGGAGGAGGGCGCTGCTGAGGTCAAGCGGCACCCATTCTTCAGG------AATTTCAAGCATTTGGAGGCTGGGATGCTTGACCCTCCCTTTGTTCAAGATgtaagcgagatccttggtagtggccaaaatagtacattctacactagtcc Alignment from CESAR CTGCTCACCAAAGACTCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCCGCCGAGGTCAAGAGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTCGTTCCAGAT ctgtttcttttgttcatcagttcatctggttaactgcaattccttcacagGTGCTTACAGAAGAATCAGAGCAGCGGCTTGGCTGCCAGGAGGAGGGCGCTGCTGAGGTCAAGCGGCACCCATTCTTCAGG------AATTTCAAGCATTTGGAGGCTGGGATGCTTGACCCTCCCTTTGTTCAAGATgtaagcgagatccttggtagtggccaaaatagtacattctacactagtcc Alignment from Spaln_aa2Genome CTGCTCACCAAAGACTCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCCGCCGAGGTCAAGAGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTCGTTCCAGAT ctgtttcttttgttcatcagttcatctggttaactgcaattccttcacagGTGCTTACAGAAGAATCAGAGCAGCGGCTTGGCTGCCAGGAGGAGGGCGCTGCTGAGGTCAAGCGGCACCCATTCTTCAGGAAT------TTCAAGCATTTGGAGGCTGGGATGCTTGACCCTCCCTTTGTTCAAGATgtaagcgagatccttggtagtggccaaaatagtacattctacactagtcc Alignment from Spaln_nt2Genome CTGCTCACCAAAGACTCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCCGCCGAGGTCAAGAGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTCGTTCCAGAT ctgtttcttttgttcatcagttcatctggttaactgcaattccttcacagGTGCTTACAGAAGAATCAGAGCAGCGGCTTGGCTGCCAGGAGGAGGGCGCTGCTGAGGTCAAGCGGCACCCATTCTTCAG------GAATTTCAAGCATTTGGAGGCTGGGATGCTTGACCCTCCCTTTGTTCAAGATgtaagcgagatccttggtagtggccaaaatagtacattctacactagtcc Alignment from Pairagon CTGCTCACCAAAGACTCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCCGCCGAGGTCAAGAGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTCGTTCCAGAT ctgtttcttttgttcatcagttcatctggttaactgcaattccttcacagGTGCTTACAGAAGAATCAGAGCAGCGGCTTGGCTGCCAGGAGGAGGGCGCTGCTGAGGTCAAGCGGCACCCATTCTTCAG------GAATTTCAAGCATTTGGAGGCTGGGATGCTTGACCCTCCCTTTGTTCAAGATgtaagcgagatccttggtagtggccaaaatagtacattctacactagtcc Alignment from Exonerate_protein2genome CTGCTCACCAAAGACTCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCCGCCGAGGTCAAGAGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTCGTTCCAGAT ctgtttcttttgttcatcagttcatctggttaactgcaattccttcacagGTGCTTACAGAAGAATCAGAGCAGCGGCTTGGCTGCCAGGAGGAGGGCGCTGCTGAGGTCAAGCGGCACCCATTCTTCAGG------AATTTCAAGCATTTGGAGGCTGGGATGCTTGACCCTCCCTTTGTTCAAGATgtaagcgagatccttggtagtggccaaaatagtacattctacactagtcc Alignment from Exonerate_coding2genome CTGCTCACCAAAGACTCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCCGCCGAGGTCAAGAGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTCGTTCCAGAT ctgtttcttttgttcatcagttcatctggttaactgcaattccttcacagGTGCTTACAGAAGAATCAGAGCAGCGGCTTGGCTGCCAGGAGGAGGGCGCTGCTGAGGTCAAGCGGCACCCATTCTTCAGG------AATTTCAAGCATTTGGAGGCTGGGATGCTTGACCCTCCCTTTGTTCAAGATgtaagcgagatccttggtagtggccaaaatagtacattctacactagtcc Alignment from GeneWise CTGCTCACCAAAGACTCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCCGCCGAGGTCAAGAGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTCGTTCCAGAT ctgtttcttttgttcatcagttcatctggttaactgcaattccttcacagGTGCTTACAGAAGAATCAGAGCAGCGGCTTGGCTGCCAGGAGGAGGGCGCTGCTGAGGTCAAGCGGCACCCATTCTTCAGGAAT------TTCAAGCATTTGGAGGCTGGGATGCTTGACCCTCCCTTTGTTCAAGATgtaagcgagatccttggtagtggccaaaatagtacattctacactagtcc #### Gsto1_ID10375_3 --> 1 - 0 Original Alignment gCACGAAGTCATCAATATCAACCTGAAGAATAAGCCCGAGTGGTTCTTTGAGAAGAATCCCCTTGGGCTGGTGCCGGTTCTGGAGAACAGCCAGGGTCACTTGGTCACCGAATCTGTCATCACTTGTGAGTACCTGGATGAGGCCTACCCAGAGAAGAAGTTATTTCCAGATGACCCGTACAAGAAGGCACGTCAGAAGATGACCCTTGAGTCATTCTCTAAG tgcctctgtatatcaattgttgacatgtatgtatggaactttctttttaggCACAACGTGATTAATGTCAACCTAAGAAATAAATCAGACTGGTTCTTTGAGAAGAATCCTCTTGGCCTTGTCCCAGTCCTAGAAAACAGCCAGGGGCACTTGGTCAGTGAATTTGCTGTTACCTGTGAGTACCTAGATAAGTCCTTCCCTGAACAAAAATTATTTCCTGATGGTCCCTACAGAAAGATGCGTCAGAAAATGACTCTCGACTCATTCTCAAAAgtaagttgagtgaaagtcatacctgaggtaacagcctctgcatgttttaa Alignment from CESAR gCACGAAGTCATCAATATCAACCTGAAGAATAAGCCCGAGTGGTTCTTTGAGAAGAATCCCCTTGGGCTGGTGCCGGTTCTGGAGAACAGCCAGGGTCACTTGGTCACCGAATCTGTCATCACTTGTGAGTACCTGGATGAGGCCTACCCAGAGAAGAAGTTATTTCCAGATGACCCGTACAAGAAGGCACGTCAGAAGATGACCCTTGAGTCATTCTCTAAG tgcctctgtatatcaattgttgacatgtatgtatggaactttctttttaggCACAACGTGATTAATGTCAACCTAAGAAATAAATCAGACTGGTTCTTTGAGAAGAATCCTCTTGGCCTTGTCCCAGTCCTAGAAAACAGCCAGGGGCACTTGGTCAGTGAATTTGCTGTTACCTGTGAGTACCTAGATAAGTCCTTCCCTGAACAAAAATTATTTCCTGATGGTCCCTACAGAAAGATGCGTCAGAAAATGACTCTCGACTCATTCTCAAAAgtaagttgagtgaaagtcatacctgaggtaacagcctctgcatgttttaa Alignment from Spaln_aa2Genome GCACGAAGTCATCAATATCAACCTGAAGAATAAGCCCGAGTGGTTCTTTGAGAAGAATCCCCTTGGGCTGGTGCCGGTTCTGGAGAACAGCCAGGGTCACTTGGTCACCGAATCTGTCATCACTTGTGAGTACCTGGATGAGGCCTACCCAGAGAAGAAGTTATTTCCAGATGACCCGTACAAGAAGGCACGTCAGAAGATGACCCTTGAGTCATTCTCTAAG tgcctctgtatatcaattgttgacatgtatgtatggaactttctttttagGCACAACGTGATTAATGTCAACCTAAGAAATAAATCAGACTGGTTCTTTGAGAAGAATCCTCTTGGCCTTGTCCCAGTCCTAGAAAACAGCCAGGGGCACTTGGTCAGTGAATTTGCTGTTACCTGTGAGTACCTAGATAAGTCCTTCCCTGAACAAAAATTATTTCCTGATGGTCCCTACAGAAAGATGCGTCAGAAAATGACTCTCGACTCATTCTCAAAAgtaagttgagtgaaagtcatacctgaggtaacagcctctgcatgttttaa Alignment from Spaln_nt2Genome GCACGAAGTCATCAATATCAACCTGAAGAATAAGCCCGAGTGGTTCTTTGAGAAGAATCCCCTTGGGCTGGTGCCGGTTCTGGAGAACAGCCAGGGTCACTTGGTCACCGAATCTGTCATCACTTGTGAGTACCTGGATGAGGCCTACCCAGAGAAGAAGTTATTTCCAGATGACCCGTACAAGAAGGCACGTCAGAAGATGACCCTTGAGTCATTCTCTAAG tgcctctgtatatcaattgttgacatgtatgtatggaactttctttttagGCACAACGTGATTAATGTCAACCTAAGAAATAAATCAGACTGGTTCTTTGAGAAGAATCCTCTTGGCCTTGTCCCAGTCCTAGAAAACAGCCAGGGGCACTTGGTCAGTGAATTTGCTGTTACCTGTGAGTACCTAGATAAGTCCTTCCCTGAACAAAAATTATTTCCTGATGGTCCCTACAGAAAGATGCGTCAGAAAATGACTCTCGACTCATTCTCAAAAgtaagttgagtgaaagtcatacctgaggtaacagcctctgcatgttttaa Alignment from Pairagon GCACGAAGTCATCAATATCAACCTGAAGAATAAGCCCGAGTGGTTCTTTGAGAAGAATCCCCTTGGGCTGGTGCCGGTTCTGGAGAACAGCCAGGGTCACTTGGTCACCGAATCTGTCATCACTTGTGAGTACCTGGATGAGGCCTACCCAGAGAAGAAGTTATTTCCAGATGACCCGTACAAGAAGGCACGTCAGAAGATGACCCTTGAGTCATTCTCTAAG tgcctctgtatatcaattgttgacatgtatgtatggaactttctttttagGCACAACGTGATTAATGTCAACCTAAGAAATAAATCAGACTGGTTCTTTGAGAAGAATCCTCTTGGCCTTGTCCCAGTCCTAGAAAACAGCCAGGGGCACTTGGTCAGTGAATTTGCTGTTACCTGTGAGTACCTAGATAAGTCCTTCCCTGAACAAAAATTATTTCCTGATGGTCCCTACAGAAAGATGCGTCAGAAAATGACTCTCGACTCATTCTCAAAAgtaagttgagtgaaagtcatacctgaggtaacagcctctgcatgttttaa Alignment from Exonerate_protein2genome GCACGAAGTCATCAATATCAACCTGAAGAATAAGCCCGAGTGGTTCTTTGAGAAGAATCCCCTTGGGCTGGTGCCGGTTCTGGAGAACAGCCAGGGTCACTTGGTCACCGAATCTGTCATCACTTGTGAGTACCTGGATGAGGCCTACCCAGAGAAGAAGTTATTTCCAGATGACCCGTACAAGAAGGCACGTCAGAAGATGACCCTTGAGTCATTCTCTAAG tgcctctgtatatcaattgttgacatgtatgtatggaactttctttttagGCACAACGTGATTAATGTCAACCTAAGAAATAAATCAGACTGGTTCTTTGAGAAGAATCCTCTTGGCCTTGTCCCAGTCCTAGAAAACAGCCAGGGGCACTTGGTCAGTGAATTTGCTGTTACCTGTGAGTACCTAGATAAGTCCTTCCCTGAACAAAAATTATTTCCTGATGGTCCCTACAGAAAGATGCGTCAGAAAATGACTCTCGACTCATTCTCAAAAgtaagttgagtgaaagtcatacctgaggtaacagcctctgcatgttttaa Alignment from Exonerate_coding2genome GCACGAAGTCATCAATATCAACCTGAAGAATAAGCCCGAGTGGTTCTTTGAGAAGAATCCCCTTGGGCTGGTGCCGGTTCTGGAGAACAGCCAGGGTCACTTGGTCACCGAATCTGTCATCACTTGTGAGTACCTGGATGAGGCCTACCCAGAGAAGAAGTTATTTCCAGATGACCCGTACAAGAAGGCACGTCAGAAGATGACCCTTGAGTCATTCTCTAAGGTG tgcctctgtatatcaattgttgacatgtatgtatggaactttctttttagGCACAACGTGATTAATGTCAACCTAAGAAATAAATCAGACTGGTTCTTTGAGAAGAATCCTCTTGGCCTTGTCCCAGTCCTAGAAAACAGCCAGGGGCACTTGGTCAGTGAATTTGCTGTTACCTGTGAGTACCTAGATAAGTCCTTCCCTGAACAAAAATTATTTCCTGATGGTCCCTACAGAAAGATGCGTCAGAAAATGACTCTCGACTCATTCTCAAAAGTAagttgagtgaaagtcatacctgaggtaacagcctctgcatgttttaa Alignment from GeneWise GCACGAAGTCATCAATATCAACCTGAAGAATAAGCCCGAGTGGTTCTTTGAGAAGAATCCCCTTGGGCTGGTGCCGGTTCTGGAGAACAGCCAGGGTCACTTGGTCACCGAATCTGTCATCACTTGTGAGTACCTGGATGAGGCCTACCCAGAGAAGAAGTTATTTCCAGATGACCCGTACAAGAAGGCACGTCAGAAGATGACCCTTGAGTCATTCTCTAAG tgcctctgtatatcaattgttgacatgtatgtatggaactttctttttagGCACAACGTGATTAATGTCAACCTAAGAAATAAATCAGACTGGTTCTTTGAGAAGAATCCTCTTGGCCTTGTCCCAGTCCTAGAAAACAGCCAGGGGCACTTGGTCAGTGAATTTGCTGTTACCTGTGAGTACCTAGATAAGTCCTTCCCTGAACAAAAATTATTTCCTGATGGTCCCTACAGAAAGATGCGTCAGAAAATGACTCTCGACTCATTCTCAAAAgtaagttgagtgaaagtcatacctgaggtaacagcctctgcatgttttaa #### Gsto1_ID10376_4 --> 0 - 0 Original Alignment GTGCCGCCTTTGATTGCAAGCTTTGTTAGGTCGAAGAGAAAGGAAGACTCTCCGAACCTAAGGGAAGCGTTGGAGAACGAATTCAAAAAGCTAGAGGAG gcagggcattcagattgcactggttatcggagtcttttttgtcctttcagGTGCCACCC------TCAAGCTTCATTAGATCCAAG---AATGAGGATTCTCCCAACCTAAAGGAAGCACTGGAAAACGAGTATAAGAAGTTAGAGGAGgtaagtacctcatttgatacctgaatctcttctgaaattgatgcctgatc Alignment from CESAR GTGCCGCCTTTGATTGCAAGCTTTGTTAGGTCGAAGAGAAAGGAAGACTCTCCGAACCTAAGGGAAGCGTTGGAGAACGAATTCAAAAAGCTAGAGGAG gcagggcattcagattgcactggttatcggagtcttttttgtcctttcagGTGCCACCC------TCAAGCTTCATTAGATCCAAG---AATGAGGATTCTCCCAACCTAAAGGAAGCACTGGAAAACGAGTATAAGAAGTTAGAGGAGgtaagtacctcatttgatacctgaatctcttctgaaattgatgcctgatc Alignment from Spaln_aa2Genome GTGCCGCCTTTGATTGCAAGCTTTGTTAGGTCGAAGAGAAAGGAAGACTCTCCGAACCTAAGGGAAGCGTTGGAGAACGAATTCAAAAAGCTAGAGGAG gcagggcattcagattgcactggttatcggagtcttttttgtcctttcagGTGCCACCC------TCAAGCTTCATTAGATCCAAG---AATGAGGATTCTCCCAACCTAAAGGAAGCACTGGAAAACGAGTATAAGAAGTTAGAGGAGgtaagtacctcatttgatacctgaatctcttctgaaattgatgcctgatc Alignment from Spaln_nt2Genome GTGCCGCCTTTGATTGCAAGCTTTGTTAGGTCGAAGAGAAAGGAAGACTCTCCGAACCTAAGGGAAGCGTTGGAGAACGAATTCAAAAAGCTAGAGGAG gcagggcattcagattgcactggttatcggagtcttttttgtcctttcagGTGCCACCCT------CAAGCTTCATTAGATCCAAG---AATGAGGATTCTCCCAACCTAAAGGAAGCACTGGAAAACGAGTATAAGAAGTTAGAGGAGgtaagtacctcatttgatacctgaatctcttctgaaattgatgcctgatc Alignment from Pairagon GTGCCGCCTTTGATTGCAAGCTTTGTTAGGTCGAAGAGAAAGGAAGACTCTCCGAACCTAAGGGAAGCGTTGGAGAACGAATTCAAAAAGCTAGAGGAG gcagggcattcagattgcactggttatcggagtcttttttgtcctttcagGTGCCACCCT------CAAGCTTCATTAGATCCAAG---AATGAGGATTCTCCCAACCTAAAGGAAGCACTGGAAAACGAGTATAAGAAGTTAGAGGAGgtaagtacctcatttgatacctgaatctcttctgaaattgatgcctgatc Alignment from Exonerate_protein2genome GTGCCGCCTTTGATTGCAAGCTTTGTTAGGTCGAAGAGAAAGGAAGACTCTCCGAACCTAAGGGAAGCGTTGGAGAACGAATTCAAAAAGCTAGAGGAG gcagggcattcagattgcactggttatcggagtcttttttgtcctttcagGTGCCACCC------TCAAGCTTCATTAGATCCAAG---AATGAGGATTCTCCCAACCTAAAGGAAGCACTGGAAAACGAGTATAAGAAGTTAGAGGAGgtaagtacctcatttgatacctgaatctcttctgaaattgatgcctgatc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGCCGCCTTTGATTGCAAGCTTTGTTAGGTCGAAGAGAAAGGAAGACTCTCCGAACCTAAGGGAAGCGTTGGAGAACGAATTCAAAAAGCTAGAGGAG gcagggcattcagattgcactggttatcggagtcttttttgtcctttcagGTGCCACCC------TCAAGCTTCATTAGATCCAAGAAT---GAGGATTCTCCCAACCTAAAGGAAGCACTGGAAAACGAGTATAAGAAGTTAGAGGAGgtaagtacctcatttgatacctgaatctcttctgaaattgatgcctgatc #### Gsto1_ID10377_5 --> 0 - 2 Original Alignment GGCATGGATAATTACAAGAGCTTCCTTGGTGGGGATTCTCCTTCTATGGTTGATTATCTTACTTGGCCTTGGTTTCAGCGACTGGAAGCATTGGAGCTCAAGga tatacaacaacaaaatctttataattgctgtttgtgcctcttttcttcagGGAATGGATAATTACAAAAGTTTCCTCGGAGGGGACTCTCCCTCTATGGTTGATCACCTTGCTTGGCCTTGGTTTCAGCGATTAGAAGCACTAGAGCTCAAAgagtaagaagttataatgttcaatactatacacggtatgtaatactatacac Alignment from CESAR GGCATGGATAATTACAAGAGCTTCCTTGGTGGGGATTCTCCTTCTATGGTTGATTATCTTACTTGGCCTTGGTTTCAGCGACTGGAAGCATTGGAGCTCAAGga tatacaacaacaaaatctttataattgctgtttgtgcctcttttcttcagGGAATGGATAATTACAAAAGTTTCCTCGGAGGGGACTCTCCCTCTATGGTTGATCACCTTGCTTGGCCTTGGTTTCAGCGATTAGAAGCACTAGAGCTCAAAgagtaagaagttataatgttcaatactatacacggtatgtaatactatacac Alignment from Spaln_aa2Genome GGCATGGATAATTACAAGAGCTTCCTTGGTGGGGATTCTCCTTCTATGGTTGATTATCTTACTTGGCCTTGGTTTCAGCGACTGGAAGCATTGGAGCTCAAGGA tatacaacaacaaaatctttataattgctgtttgtgcctcttttcttcagGGAATGGATAATTACAAAAGTTTCCTCGGAGGGGACTCTCCCTCTATGGTTGATCACCTTGCTTGGCCTTGGTTTCAGCGATTAGAAGCACTAGAGCTCAAAGAgtaagaagttataatgttcaatactatacacggtatgtaatactatacac Alignment from Spaln_nt2Genome GGCATGGATAATTACAAGAGCTTCCTTGGTGGGGATTCTCCTTCTATGGTTGATTATCTTACTTGGCCTTGGTTTCAGCGACTGGAAGCATTGGAGCTCAAGGA tatacaacaacaaaatctttataattgctgtttgtgcctcttttcttcagGGAATGGATAATTACAAAAGTTTCCTCGGAGGGGACTCTCCCTCTATGGTTGATCACCTTGCTTGGCCTTGGTTTCAGCGATTAGAAGCACTAGAGCTCAAAGAgtaagaagttataatgttcaatactatacacggtatgtaatactatacac Alignment from Pairagon GGCATGGATAATTACAAGAGCTTCCTTGGTGGGGATTCTCCTTCTATGGTTGATTATCTTACTTGGCCTTGGTTTCAGCGACTGGAAGCATTGGAGCTCAAGGA tatacaacaacaaaatctttataattgctgtttgtgcctcttttcttcagGGAATGGATAATTACAAAAGTTTCCTCGGAGGGGACTCTCCCTCTATGGTTGATCACCTTGCTTGGCCTTGGTTTCAGCGATTAGAAGCACTAGAGCTCAAAGAgtaagaagttataatgttcaatactatacacggtatgtaatactatacac Alignment from Exonerate_protein2genome GGCATGGATAATTACAAGAGCTTCCTTGGTGGGGATTCTCCTTCTATGGTTGATTATCTTACTTGGCCTTGGTTTCAGCGACTGGAAGCATTGGAGCTCAAGGA tatacaacaacaaaatctttataattgctgtttgtgcctcttttcttcagGGAATGGATAATTACAAAAGTTTCCTCGGAGGGGACTCTCCCTCTATGGTTGATCACCTTGCTTGGCCTTGGTTTCAGCGATTAGAAGCACTAGAGCTCAAAGAgtaagaagttataatgttcaatactatacacggtatgtaatactatacac Alignment from Exonerate_coding2genome CTCCGAACCTAAGGGAAGCGTTGGAGAACGAATTCAAAAAGCTAGAGGAGGGCATGGATAATTACAAGAGCTTCCTTGGTGGGGATTCTCCTTCTATGGTTGATTATCTTACTTGGCCTTGGTTTCAGCGACTGGAAGCATTGGAGCTCAAGGA TATACAACAACAAAATCTTTATAATTGCTGTTTGTGCCTCTTTTCTTCAGGGAATGGATAATTACAAAAGTTTCCTCGGAGGGGACTCTCCCTCTATGGTTGATCACCTTGCTTGGCCTTGGTTTCAGCGATTAGAAGCACTAGAGCTCAAAGAgtaagaagttataatgttcaatactatacacggtatgtaatactatacac Alignment from GeneWise GGCATGGATAATTACAAGAGCTTCCTTGGTGGGGATTCTCCTTCTATGGTTGATTATCTTACTTGGCCTTGGTTTCAGCGACTGGAAGCATTGGAGCTCAAGGA tatacaacaacaaaatctttataattgctgtttgtgcctcttttcttcagGGAATGGATAATTACAAAAGTTTCCTCGGAGGGGACTCTCCCTCTATGGTTGATCACCTTGCTTGGCCTTGGTTTCAGCGATTAGAAGCACTAGAGCTCAAAGAgtaagaagttataatgttcaatactatacacggtatgtaatactatacac #### Gucy2g_ID11571_20 --> 2 - 0 Original Alignment ctCTCCGGATTCACGTTTCCCAGAGCACCGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAAAGAGA---GGCACCATT------TCAGTCAAG atccattgtcttgcaaatggcaaaagtataacaagtgttctttctcctagctCTCCGCATTCATATTTCACACAGCACTTCTGGTGCTCTTTTAGCAGCAGGGGGGTACCCTCTGCAAGAGAGAGGCAGCACTGTTTCTGTGTCTGTGAAGgtaagtctgggcctttcttgtgctcagcattgataatgtctaaatcatga Alignment from CESAR ctCTCCGGATTCACGTTTCCCAGAGCACCGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAAAGAGAGGCACC---------ATTTCAGTCAAG atccattgtcttgcaaatggcaaaagtataacaagtgttctttctcctagctCTCCGCATTCATATTTCACACAGCACTTCTGGTGCTCTTTTAGCAGCAGGGGGGTACCCTCTGCAAGAGAGAGGCAGCACTGTTTCTGTGTCTGTGAAGgtaagtctgggcctttcttgtgctcagcattgataatgtctaaatcatga Alignment from Spaln_aa2Genome CTCTCCGGATTCACGTTTCCCAGAGCACCGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAAAGAGAGGC---------ACCATTTCAGTCAAG atccattgtcttgcaaatggcaaaagtataacaagtgttctttctcctagCTCTCCGCATTCATATTTCACACAGCACTTCTGGTGCTCTTTTAGCAGCAGGGGGGTACCCTCTGCAAGAGAGAGGCAGCACTGTTTCTGTGTCTGTGAAGgtaagtctgggcctttcttgtgctcagcattgataatgtctaaatcatga Alignment from Spaln_nt2Genome CTCTCCGGATTCACGTTTCCCAGAGCACCGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAAAGAGAGGCACCATT---------TCAGTCAAG atccattgtcttgcaaatggcaaaagtataacaagtgttctttctcctagCTCTCCGCATTCATATTTCACACAGCACTTCTGGTGCTCTTTTAGCAGCAGGGGGGTACCCTCTGCAAGAGAGAGGCAGCACTGTTTCTGTGTCTGTGAAGgtaagtctgggcctttcttgtgctcagcattgataatgtctaaatcatga Alignment from Pairagon CTCTCCGGATTCACGTTTCCCAGAGCACCGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAAAGAGAGGCACCATT---------TCAGTCAAG atccattgtcttgcaaatggcaaaagtataacaagtgttctttctcctagCTCTCCGCATTCATATTTCACACAGCACTTCTGGTGCTCTTTTAGCAGCAGGGGGGTACCCTCTGCAAGAGAGAGGCAGCACTGTTTCTGTGTCTGTGAAGgtaagtctgggcctttcttgtgctcagcattgataatgtctaaatcatga Alignment from Exonerate_protein2genome CTCTCCGGATTCACGTTTCCCAGAGCACCGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAAAGAGAGGC---------ACCATTTCAGTCAAG atccattgtcttgcaaatggcaaaagtataacaagtgttctttctcctagCTCTCCGCATTCATATTTCACACAGCACTTCTGGTGCTCTTTTAGCAGCAGGGGGGTACCCTCTGCAAGAGAGAGGCAGCACTGTTTCTGTGTCTGTGAAGgtaagtctgggcctttcttgtgctcagcattgataatgtctaaatcatga Alignment from Exonerate_coding2genome CTCTCCGGATTCACGTTTCCCAGAGCACCGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAAAGAGAGGC---------ACCATTTCAGTCAAG atccattgtcttgcaaatggcaaaagtataacaagtgttctttctcctagCTCTCCGCATTCATATTTCACACAGCACTTCTGGTGCTCTTTTAGCAGCAGGGGGGTACCCTCTGCAAGAGAGAGGCAGCACTGTTTCTGTGTCTGTGAAGgtaagtctgggcctttcttgtgctcagcattgataatgtctaaatcatga Alignment from GeneWise CTCTCCGGATTCACGTTTCCCAGAGCACCGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAAAGAGAGGC---ACCATTTCAGTCAAG atccattgtcttgcaaatggcaaaagtataacaagtgttctttctcctagCTCTCCGCATTCATATTTCACACAGCACTTCTGGTGCTCTTTTAGCAGCAGGGGGGTACCCTCTGCAAGAGAGAGGCAGCACTGTTTCTGTGTCTgtgaaggtaagtctgggcctttcttgtgctcagcattgataatgtctaaatcatga #### Gucy2g_ID11572_19 --> 2 - 1 Original Alignment gtCCTGTGGTGGCCGGTGTGGTGGGAATCACCATGCCCAGGTACTGTCTGTTTGGAGACACTGTGAACATGGCATCCAGGATGGAAAGCAGCAGCTTGc tgggatcacattctaagtagatatcaataatgttattctcctgtcaccaggtCCTGTGGTGGCTGGTGTGGTGGGAATCAGTATGCCCAGGTACTGCTTGTTTGGTGACACTGTGAATATGGCATCTACTATGGAAAGCAGCAGCTTAcgtaagcgtgtgatactgagtagatcagaacctatggactctagccccaaa Alignment from CESAR gtCCTGTGGTGGCCGGTGTGGTGGGAATCACCATGCCCAGGTACTGTCTGTTTGGAGACACTGTGAACATGGCATCCAGGATGGAAAGCAGCAGCTTGc tgggatcacattctaagtagatatcaataatgttattctcctgtcaccaggtCCTGTGGTGGCTGGTGTGGTGGGAATCAGTATGCCCAGGTACTGCTTGTTTGGTGACACTGTGAATATGGCATCTACTATGGAAAGCAGCAGCTTAcgtaagcgtgtgatactgagtagatcagaacctatggactctagccccaaa Alignment from Spaln_aa2Genome GTCCTGTGGTGGCCGGTGTGGTGGGAATCACCATGCCCAGGTACTGTCTGTTTGGAGACACTGTGAACATGGCATCCAGGATGGAAAGCAGCAGCTTGC tgggatcacattctaagtagatatcaataatgttattctcctgtcaccagGTCCTGTGGTGGCTGGTGTGGTGGGAATCAGTATGCCCAGGTACTGCTTGTTTGGTGACACTGTGAATATGGCATCTACTATGGAAAGCAGCAGCTTACgtaagcgtgtgatactgagtagatcagaacctatggactctagccccaaa Alignment from Spaln_nt2Genome GTCCTGTGGTGGCCGGTGTGGTGGGAATCACCATGCCCAGGTACTGTCTGTTTGGAGACACTGTGAACATGGCATCCAGGATGGAAAGCAGCAGCTTGC tgggatcacattctaagtagatatcaataatgttattctcctgtcaccagGTCCTGTGGTGGCTGGTGTGGTGGGAATCAGTATGCCCAGGTACTGCTTGTTTGGTGACACTGTGAATATGGCATCTACTATGGAAAGCAGCAGCTTACgtaagcgtgtgatactgagtagatcagaacctatggactctagccccaaa Alignment from Pairagon GTCCTGTGGTGGCCGGTGTGGTGGGAATCACCATGCCCAGGTACTGTCTGTTTGGAGACACTGTGAACATGGCATCCAGGATGGAAAGCAGCAGCTTGC tgggatcacattctaagtagatatcaataatgttattctcctgtcaccagGTCCTGTGGTGGCTGGTGTGGTGGGAATCAGTATGCCCAGGTACTGCTTGTTTGGTGACACTGTGAATATGGCATCTACTATGGAAAGCAGCAGCTTACgtaagcgtgtgatactgagtagatcagaacctatggactctagccccaaa Alignment from Exonerate_protein2genome GTCCTGTGGTGGCCGGTGTGGTGGGAATCACCATGCCCAGGTACTGTCTGTTTGGAGACACTGTGAACATGGCATCCAGGATGGAAAGCAGCAGCTTGC tgggatcacattctaagtagatatcaataatgttattctcctgtcaccagGTCCTGTGGTGGCTGGTGTGGTGGGAATCAGTATGCCCAGGTACTGCTTGTTTGGTGACACTGTGAATATGGCATCTACTATGGAAAGCAGCAGCTTACgtaagcgtgtgatactgagtagatcagaacctatggactctagccccaaa Alignment from Exonerate_coding2genome GTCCTGTGGTGGCCGGTGTGGTGGGAATCACCATGCCCAGGTACTGTCTGTTTGGAGACACTGTGAACATGGCATCCAGGATGGAAAGCAGCAGCTTGC tgggatcacattctaagtagatatcaataatgttattctcctgtcaccagGTCCTGTGGTGGCTGGTGTGGTGGGAATCAGTATGCCCAGGTACTGCTTGTTTGGTGACACTGTGAATATGGCATCTACTATGGAAAGCAGCAGCTTACgtaagcgtgtgatactgagtagatcagaacctatggactctagccccaaa Alignment from GeneWise GTCCTGTGGTGGCCGGTGTGGTGGGAATCACCATGCCCAGGTACTGTCTGTTTGGAGACACTGTGAACATGGCATCCAGGATGGAAAGCAGCAGCTTGC tgggatcacattctaagtagatatcaataatgttattctcctgtcaccagGTCCTGTGGTGGCTGGTGTGGTGGGAATCAGTATGCCCAGGTACTGCTTGTTTGGTGACACTGTGAATATGGCATCTACTATGGAAAGCAGCAGCTTACgtaagcgtgtgatactgagtagatcagaacctatggactctagccccaaa #### Gucy2g_ID11578_13 --> 0 - 1 Original Alignment GGCTTGCTGTTCCTGCATGGGAGCCCACTGAGGTCTCACGGCAACCTGAAACCTTCCAACTGCCTGGTAGATAGTCACATGCAGCTGAAGCTGTCAGGATTTGGGTTGTGGGAGTTCAAGCACGGCAGCACATGGAGGAGCTACAACCAGGAGGCCACAGACCATTCAg gtgcacctgtcctccgctaccttttttattttttcctctggtcccacaagGGTCTGCTATTCCTCCATGGGAGCCCACTGAGGTCTCACAGCAATTTGAAACTATCAAACTGTCTGGTATATAGCCACATGCAATTGAAGTTGTCTGGATTTGGGTTGTGGGAGTTTAAGCATGGCAGTGCATGGAGGAGCTACAACCAGGAGGCTACTGACCATTCAggtaaggtttgctagaagtaagaactaaaatctgtttgccccactgatgag Alignment from CESAR GGCTTGCTGTTCCTGCATGGGAGCCCACTGAGGTCTCACGGCAACCTGAAACCTTCCAACTGCCTGGTAGATAGTCACATGCAGCTGAAGCTGTCAGGATTTGGGTTGTGGGAGTTCAAGCACGGCAGCACATGGAGGAGCTACAACCAGGAGGCCACAGACCATTCAg gtgcacctgtcctccgctaccttttttattttttcctctggtcccacaagGGTCTGCTATTCCTCCATGGGAGCCCACTGAGGTCTCACAGCAATTTGAAACTATCAAACTGTCTGGTATATAGCCACATGCAATTGAAGTTGTCTGGATTTGGGTTGTGGGAGTTTAAGCATGGCAGTGCATGGAGGAGCTACAACCAGGAGGCTACTGACCATTCAggtaaggtttgctagaagtaagaactaaaatctgtttgccccactgatgag Alignment from Spaln_aa2Genome GGCTTGCTGTTCCTGCATGGGAGCCCACTGAGGTCTCACGGCAACCTGAAACCTTCCAACTGCCTGGTAGATAGTCACATGCAGCTGAAGCTGTCAGGATTTGGGTTGTGGGAGTTCAAGCACGGCAGCACATGGAGGAGCTACAACCAGGAGGCCACAGACCATTCAG gtgcacctgtcctccgctaccttttttattttttcctctggtcccacaagGGTCTGCTATTCCTCCATGGGAGCCCACTGAGGTCTCACAGCAATTTGAAACTATCAAACTGTCTGGTATATAGCCACATGCAATTGAAGTTGTCTGGATTTGGGTTGTGGGAGTTTAAGCATGGCAGTGCATGGAGGAGCTACAACCAGGAGGCTACTGACCATTCAGgtaaggtttgctagaagtaagaactaaaatctgtttgccccactgatgag Alignment from Spaln_nt2Genome GGCTTGCTGTTCCTGCATGGGAGCCCACTGAGGTCTCACGGCAACCTGAAACCTTCCAACTGCCTGGTAGATAGTCACATGCAGCTGAAGCTGTCAGGATTTGGGTTGTGGGAGTTCAAGCACGGCAGCACATGGAGGAGCTACAACCAGGAGGCCACAGACCATTCAG gtgcacctgtcctccgctaccttttttattttttcctctggtcccacaagGGTCTGCTATTCCTCCATGGGAGCCCACTGAGGTCTCACAGCAATTTGAAACTATCAAACTGTCTGGTATATAGCCACATGCAATTGAAGTTGTCTGGATTTGGGTTGTGGGAGTTTAAGCATGGCAGTGCATGGAGGAGCTACAACCAGGAGGCTACTGACCATTCAGgtaaggtttgctagaagtaagaactaaaatctgtttgccccactgatgag Alignment from Pairagon GGCTTGCTGTTCCTGCATGGGAGCCCACTGAGGTCTCACGGCAACCTGAAACCTTCCAACTGCCTGGTAGATAGTCACATGCAGCTGAAGCTGTCAGGATTTGGGTTGTGGGAGTTCAAGCACGGCAGCACATGGAGGAGCTACAACCAGGAGGCCACAGACCATTCAG gtgcacctgtcctccgctaccttttttattttttcctctggtcccacaagGGTCTGCTATTCCTCCATGGGAGCCCACTGAGGTCTCACAGCAATTTGAAACTATCAAACTGTCTGGTATATAGCCACATGCAATTGAAGTTGTCTGGATTTGGGTTGTGGGAGTTTAAGCATGGCAGTGCATGGAGGAGCTACAACCAGGAGGCTACTGACCATTCAGgtaaggtttgctagaagtaagaactaaaatctgtttgccccactgatgag Alignment from Exonerate_protein2genome GGCTTGCTGTTCCTGCATGGGAGCCCACTGAGGTCTCACGGCAACCTGAAACCTTCCAACTGCCTGGTAGATAGTCACATGCAGCTGAAGCTGTCAGGATTTGGGTTGTGGGAGTTCAAGCACGGCAGCACATGGAGGAGCTACAACCAGGAGGCCACAGACCATTCAG gtgcacctgtcctccgctaccttttttattttttcctctggtcccacaagGGTCTGCTATTCCTCCATGGGAGCCCACTGAGGTCTCACAGCAATTTGAAACTATCAAACTGTCTGGTATATAGCCACATGCAATTGAAGTTGTCTGGATTTGGGTTGTGGGAGTTTAAGCATGGCAGTGCATGGAGGAGCTACAACCAGGAGGCTACTGACCATTCAGgtaaggtttgctagaagtaagaactaaaatctgtttgccccactgatgag Alignment from Exonerate_coding2genome GGCTTGCTGTTCCTGCATGGGAGCCCACTGAGGTCTCACGGCAACCTGAAACCTTCCAACTGCCTGGTAGATAGTCACATGCAGCTGAAGCTGTCAGGATTTGGGTTGTGGGAGTTCAAGCACGGCAGCACATGGAGGAGCTACAACCAGGAGGCCACAGACCATTCAG gtgcacctgtcctccgctaccttttttattttttcctctggtcccacaagGGTCTGCTATTCCTCCATGGGAGCCCACTGAGGTCTCACAGCAATTTGAAACTATCAAACTGTCTGGTATATAGCCACATGCAATTGAAGTTGTCTGGATTTGGGTTGTGGGAGTTTAAGCATGGCAGTGCATGGAGGAGCTACAACCAGGAGGCTACTGACCATTCAGgtaaggtttgctagaagtaagaactaaaatctgtttgccccactgatgag Alignment from GeneWise GGCTTGCTGTTCCTGCATGGGAGCCCACTGAGGTCTCACGGCAACCTGAAACCTTCCAACTGCCTGGTAGATAGTCACATGCAGCTGAAGCTGTCAGGATTTGGGTTGTGGGAGTTCAAGCACGGCAGCACATGGAGGAGCTACAACCAGGAGGCCACAGACCATTCAG gtgcacctgtcctccgctaccttttttattttttcctctggtcccacaagGGTCTGCTATTCCTCCATGGGAGCCCACTGAGGTCTCACAGCAATTTGAAACTATCAAACTGTCTGGTATATAGCCACATGCAATTGAAGTTGTCTGGATTTGGGTTGTGGGAGTTTAAGCATGGCAGTGCATGGAGGAGCTACAACCAGGAGGCTACTGACCATTCAGgtaaggtttgctagaagtaagaactaaaatctgtttgccccactgatgag #### Gucy2g_ID11579_12 --> 0 - 0 Original Alignment GATGTTATGAGGAACTCCGATCATGAGATAGATTGGATATTCAAGCTCTCCTTTGCGTATGACATAGTCAAT ttctgaatcagctctgagttgtggagtgttttcattcctttcttttctagGATGTTATGAGGAATTCTGATCATGAAATAGACTGGATATTCAAGCTCTCCTTTGCATATGACATAGTCAACgtaagtttctcactgtactcttccacatttcatggttacaccctcccctc Alignment from CESAR GATGTTATGAGGAACTCCGATCATGAGATAGATTGGATATTCAAGCTCTCCTTTGCGTATGACATAGTCAAT ttctgaatcagctctgagttgtggagtgttttcattcctttcttttctagGATGTTATGAGGAATTCTGATCATGAAATAGACTGGATATTCAAGCTCTCCTTTGCATATGACATAGTCAACgtaagtttctcactgtactcttccacatttcatggttacaccctcccctc Alignment from Spaln_aa2Genome GATGTTATGAGGAACTCCGATCATGAGATAGATTGGATATTCAAGCTCTCCTTTGCGTATGACATAGTCAAT ttctgaatcagctctgagttgtggagtgttttcattcctttcttttctagGATGTTATGAGGAATTCTGATCATGAAATAGACTGGATATTCAAGCTCTCCTTTGCATATGACATAGTCAACgtaagtttctcactgtactcttccacatttcatggttacaccctcccctc Alignment from Spaln_nt2Genome GATGTTATGAGGAACTCCGATCATGAGATAGATTGGATATTCAAGCTCTCCTTTGCGTATGACATAGTCAAT ttctgaatcagctctgagttgtggagtgttttcattcctttcttttctagGATGTTATGAGGAATTCTGATCATGAAATAGACTGGATATTCAAGCTCTCCTTTGCATATGACATAGTCAACgtaagtttctcactgtactcttccacatttcatggttacaccctcccctc Alignment from Pairagon GATGTTATGAGGAACTCCGATCATGAGATAGATTGGATATTCAAGCTCTCCTTTGCGTATGACATAGTCAAT ttctgaatcagctctgagttgtggagtgttttcattcctttcttttctagGATGTTATGAGGAATTCTGATCATGAAATAGACTGGATATTCAAGCTCTCCTTTGCATATGACATAGTCAACgtaagtttctcactgtactcttccacatttcatggttacaccctcccctc Alignment from Exonerate_protein2genome GATGTTATGAGGAACTCCGATCATGAGATAGATTGGATATTCAAGCTCTCCTTTGCGTATGACATAGTCAAT ttctgaatcagctctgagttgtggagtgttttcattcctttcttttctagGATGTTATGAGGAATTCTGATCATGAAATAGACTGGATATTCAAGCTCTCCTTTGCATATGACATAGTCAACgtaagtttctcactgtactcttccacatttcatggttacaccctcccctc Alignment from Exonerate_coding2genome GATGTTATGAGGAACTCCGATCATGAGATAGATTGGATATTCAAGCTCTCCTTTGCGTATGACATAGTCAAT ttctgaatcagctctgagttgtggagtgttttcattcctttcttttctagGATGTTATGAGGAATTCTGATCATGAAATAGACTGGATATTCAAGCTCTCCTTTGCATATGACATAGTCAACgtaagtttctcactgtactcttccacatttcatggttacaccctcccctc Alignment from GeneWise GATGTTATGAGGAACTCCGATCATGAGATAGATTGGATATTCAAGCTCTCCTTTGCGTATGACATAGTCAAT ttctgaatcagctctgagttgtggagtgttttcattcctttcttttctagGATGTTATGAGGAATTCTGATCATGAAATAGACTGGATATTCAAGCTCTCCTTTGCATATGACATAGTCAACgtaagtttctcactgtactcttccacatttcatggttacaccctcccctc #### Gucy2g_ID11585_6 --> 2 - 2 Original Alignment gaATCACCGGTCCTGTGCTTTTGGACTCCCAGGGGAAAAGGCACGTGGATTACTCCGTCTATGCTCTGCAGGAATCTGGAAACAGGTCCCTCTTCCTTCCCTTTCTTCATTATGACAGTTTTCAGAAAGTAATCag ccagttagacaactctcaagttcagtcagtgccatctctcctgctttcaggaATCAGTGGTCTTGTGCTCCTAGATTGCCAAGGCAAGAGGCATGTGGATTACTCCATCTACACTCTGCAGAAATCTGGCAACAGGTCCCTTTACCTGACTTTTCTACACTATGACAGTTTTCAGAAAGTAATCaggtttgcgtaattttctaaatctcaatcaattttctaaatcccacaatgcc Alignment from CESAR gaATCACCGGTCCTGTGCTTTTGGACTCCCAGGGGAAAAGGCACGTGGATTACTCCGTCTATGCTCTGCAGGAATCTGGAAACAGGTCCCTCTTCCTTCCCTTTCTTCATTATGACAGTTTTCAGAAAGTAATCag ccagttagacaactctcaagttcagtcagtgccatctctcctgctttcaggaATCAGTGGTCTTGTGCTCCTAGATTGCCAAGGCAAGAGGCATGTGGATTACTCCATCTACACTCTGCAGAAATCTGGCAACAGGTCCCTTTACCTGACTTTTCTACACTATGACAGTTTTCAGAAAGTAATCaggtttgcgtaattttctaaatctcaatcaattttctaaatcccacaatgcc Alignment from Spaln_aa2Genome GAATCACCGGTCCTGTGCTTTTGGACTCCCAGGGGAAAAGGCACGTGGATTACTCCGTCTATGCTCTGCAGGAATCTGGAAACAGGTCCCTCTTCCTTCCCTTTCTTCATTATGACAGTTTTCAGAAAGTAATCAG ccagttagacaactctcaagttcagtcagtgccatctctcctgctttcagGAATCAGTGGTCTTGTGCTCCTAGATTGCCAAGGCAAGAGGCATGTGGATTACTCCATCTACACTCTGCAGAAATCTGGCAACAGGTCCCTTTACCTGACTTTTCTACACTATGACAGTTTTCAGAAAGTAATCAGgtttgcgtaattttctaaatctcaatcaattttctaaatcccacaatgcc Alignment from Spaln_nt2Genome GAATCACCGGTCCTGTGCTTTTGGACTCCCAGGGGAAAAGGCACGTGGATTACTCCGTCTATGCTCTGCAGGAATCTGGAAACAGGTCCCTCTTCCTTCCCTTTCTTCATTATGACAGTTTTCAGAAAGTAATCAG ccagttagacaactctcaagttcagtcagtgccatctctcctgctttcagGAATCAGTGGTCTTGTGCTCCTAGATTGCCAAGGCAAGAGGCATGTGGATTACTCCATCTACACTCTGCAGAAATCTGGCAACAGGTCCCTTTACCTGACTTTTCTACACTATGACAGTTTTCAGAAAGTAATCAGgtttgcgtaattttctaaatctcaatcaattttctaaatcccacaatgcc Alignment from Pairagon GAATCACCGGTCCTGTGCTTTTGGACTCCCAGGGGAAAAGGCACGTGGATTACTCCGTCTATGCTCTGCAGGAATCTGGAAACAGGTCCCTCTTCCTTCCCTTTCTTCATTATGACAGTTTTCAGAAAGTAATCAG ccagttagacaactctcaagttcagtcagtgccatctctcctgctttcagGAATCAGTGGTCTTGTGCTCCTAGATTGCCAAGGCAAGAGGCATGTGGATTACTCCATCTACACTCTGCAGAAATCTGGCAACAGGTCCCTTTACCTGACTTTTCTACACTATGACAGTTTTCAGAAAGTAATCAGgtttgcgtaattttctaaatctcaatcaattttctaaatcccacaatgcc Alignment from Exonerate_protein2genome GAATCACCGGTCCTGTGCTTTTGGACTCCCAGGGGAAAAGGCACGTGGATTACTCCGTCTATGCTCTGCAGGAATCTGGAAACAGGTCCCTCTTCCTTCCCTTTCTTCATTATGACAGTTTTCAGAAAGTAATCAG ccagttagacaactctcaagttcagtcagtgccatctctcctgctttcagGAATCAGTGGTCTTGTGCTCCTAGATTGCCAAGGCAAGAGGCATGTGGATTACTCCATCTACACTCTGCAGAAATCTGGCAACAGGTCCCTTTACCTGACTTTTCTACACTATGACAGTTTTCAGAAAGTAATCAGgtttgcgtaattttctaaatctcaatcaattttctaaatcccacaatgcc Alignment from Exonerate_coding2genome CAGGTCACACTGCAGGGAATCACCGGTCCTGTGCTTTTGGACTCCCAGGGGAAAAGGCACGTGGATTACTCCGTCTATGCTCTGCAGGAATCTGGAAACAGGTCCCTCTTCCTTCCCTTTCTTCATTATGACAGTTTTCAGAAAGTAATCAG ccagttagacaactctcaagttcagtcagtgccaTCTCTCCTGCTTTCAGGAATCAGTGGTCTTGTGCTCCTAGATTGCCAAGGCAAGAGGCATGTGGATTACTCCATCTACACTCTGCAGAAATCTGGCAACAGGTCCCTTTACCTGACTTTTCTACACTATGACAGTTTTCAGAAAGTAATCAGgtttgcgtaattttctaaatctcaatcaattttctaaatcccacaatgcc Alignment from GeneWise GAATCACCGGTCCTGTGCTTTTGGACTCCCAGGGGAAAAGGCACGTGGATTACTCCGTCTATGCTCTGCAGGAATCTGGAAACAGGTCCCTCTTCCTTCCCTTTCTTCATTATGACAGTTTTCAGAAAGTAATCAG ccagttagacaactctcaagttcagtcagtgccatctctcctgctttcagGAATCAGTGGTCTTGTGCTCCTAGATTGCCAAGGCAAGAGGCATGTGGATTACTCCATCTACACTCTGCAGAAATCTGGCAACAGGTCCCTTTACCTGACTTTTCTACACTATGACAGTTTTCAGAAAGTAATCAGgtttgcgtaattttctaaatctcaatcaattttctaaatcccacaatgcc #### Habp2_ID12058_4 --> 2 - 1 Original Alignment caCAAAACAAGTGCAAGGACAACCCATGTGTCCATGGTGATTGCCTCATTACCCAGAAGCACCCCTACTACCGCTGTGCCTGCAAATACCCTTACACGGGACCA------------------GACTGCTCCAAAg tctgggcatagaagagcatactccagtggcccgatctcctgcccctgcagcaCAAAACAAGAGCAAGGACAACCCA------CATGGTGATTGTCTTACAACTCAGACACACCCCTATTACCGCTGTGCATGCAAGTACCCTTACACAGGACTAGTTACAAATCCATGGGCAGACTGTTCCAAAggtgatggcttgcacatttttgggagaatgttcacacaacagttcctttta Alignment from CESAR caCAAAACAAGTGCAAGGACAACCCATGTGTCCATGGTGATTGCCTCATTACCCAGAAGCACCCCTACTACCGCTGTGCCTGCAAATACCCTTACACGGGA------------------CCAGACTGCTCCAAAg tctgggcatagaagagcatactccagtggcccgatctcctgcccctgcagcaCAAAACAAGAGCAAGGACAACCCA------CATGGTGATTGTCTTACAACTCAGACACACCCCTATTACCGCTGTGCATGCAAGTACCCTTACACAGGACTAGTTACAAATCCATGGGCAGACTGTTCCAAAggtgatggcttgcacatttttgggagaatgttcacacaacagttcctttta Alignment from Spaln_aa2Genome CACAAAACAAGTGCAAGGACAACCCATGTGTCCATGGTGATTGCCTCATTACCCAGAAGCACCCCTACTACCGCTGTGCCTGCAAATACCCTTACACGGGA------------------CCAGACTGCTCCAAAG tctgggcatagaagagcatactccagtggcccgatctcctgcccctgcagCACAAAACAAGAGCAAGGACAACCCA------CATGGTGATTGTCTTACAACTCAGACACACCCCTATTACCGCTGTGCATGCAAGTACCCTTACACAGGACTAGTTACAAATCCATGGGCAGACTGTTCCAAAGgtgatggcttgcacatttttgggagaatgttcacacaacagttcctttta Alignment from Spaln_nt2Genome CACAAAACAAGTGCAAGGACAACCCATGTGTCCATGGTGATTGCCTCATTACCCAGAAGCACCCCTACTACCGCTGTGCCTGCAAATACCCTTACACGGGACCAG--ACTGCTCCAAAG tctgggcatagaagagcatactccagtggcccgatctcctgcccctgcagCACAAAACAAGAGCAAGGACAACCCA------CATGGTGATTGTCTTACAACTCAGACACACCCCTATTACCGCTGTGCATGCAAGTACCCTTACACAGGACTAGTTACAAATCCATGGgcagactgttccaaaggtgatggcttgcacatttttgggagaatgttcacacaacagttcctttta Alignment from Pairagon CACAAAACAAGTGCAAGGACAACCCATGTGTCCATGGTGATTGCCTCATTACCCAGAAGCACCCCTACTACCGCTGTGCCTGCAAATACCCTTACACGGGAC------------------CAGACTGCTCCAAAG tctgggcatagaagagcatactccagtggcccgatctcctgcccctgcagCACAAAACAAGAGCAAGGACAACCCA------CATGGTGATTGTCTTACAACTCAGACACACCCCTATTACCGCTGTGCATGCAAGTACCCTTACACAGGACTAGTTACAAATCCATGGGCAGACTGTTCCAAAGgtgatggcttgcacatttttgggagaatgttcacacaacagttcctttta Alignment from Exonerate_protein2genome CACAAAACAAGTGCAAGGACAACCCATGTGTCCATGGTGATTGCCTCATTACCCAGAAGCACCCCTACTACCGCTGTGCCTGCAAATACCCTTACACGGGACCAGACTGCTCCAAAG tctgggcatagaagagcatactccagtggcccgatctcctgcccctgcagCACAAAACAAGAGCAAGGACAACCCA------CATGGTGATTGTCTTACAACTCAGACACACCCCTATTACCGCTGTGCATGCAAGTACCCTTACACAGGACTAGTTACAAATCCATgggcagactgttccaaaggtgatggcttgcacatttttgggagaatgttcacacaacagttcctttta Alignment from Exonerate_coding2genome CACAAAACAAGTGCAAGGACAACCCATGTGTCCATGGTGATTGCCTCATTACCCAGAAGCACCCCTACTACCGCTGTGCCTGCAAATACCCTTACACGGGACCAGACTGCTCCAAAG tctgggcatagaagagcatactccagtggcccgatctcctgcccctgcagCACAAAACAAGAGCAAGGACAACCCA------CATGGTGATTGTCTTACAACTCAGACACACCCCTATTACCGCTGTGCATGCAAGTACCCTTACACAGGACTAGTTACAAATCCATgggcagactgttccaaaggtgatggcttgcacatttttgggagaatgttcacacaacagttcctttta Alignment from GeneWise CACAAAACAAGTGCAAGGACAACCCATGTGTCCATGGTGATTGCCTCATTACCCAGAAGCACCCCTACTACCGCTGTGCCTGCAAATACCCTTACACGGGA------------------CCAGACTGCTCCAAAG tctgggcatagaagagcatactccagtggcccgatctcctgcccctgcagCACAAAACAAGAGCAAGGACAACCCA------CATGGTGATTGTCTTACAACTCAGACACACCCCTATTACCGCTGTGCATGCAAGTACCCTTACACAGGACTAGTTACAAATCCATGGGCAGACTGTTCCAAAGgtgatggcttgcacatttttgggagaatgttcacacaacagttcctttta #### Habp2_ID12059_5 --> 2 - 1 Original Alignment tgCTTCCGGCATGCAGGCCAAACCCCTGCCAGAATGGCGGAGTCTGTTCCCGACACAGACGGAGATCCAGGTTTACCTGTGCCTGTCCAGACCAGTATAAGGGGAAATTCTGTGAAATAg gttcccattccccacccatctggtaggcgttcctttttccctcggggtagtgTTGCCA---GGGAGGCCAAACCCCTGTCAAAATGGTGGAGTGTGCTTCAGGCACAGACGAAGATTAAGGTTCACCTGGGCATCCCCTGATCAGTACAAAGGGAAATTCTGCAGAATTggtaaatgtctttggtaccacatcattgaaaatgctatgcccttactggga Alignment from CESAR tgCTTCCGGCATGCAGGCCAAACCCCTGCCAGAATGGCGGAGTCTGTTCCCGACACAGACGGAGATCCAGGTTTACCTGTGCCTGTCCAGACCAGTATAAGGGGAAATTCTGTGAAATAg gttcccattccccacccatctggtaggcgttcctttttccctcggggtagtgTTGCCAGGG---AGGCCAAACCCCTGTCAAAATGGTGGAGTGTGCTTCAGGCACAGACGAAGATTAAGGTTCACCTGGGCATCCCCTGATCAGTACAAAGGGAAATTCTGCAGAATTggtaaatgtctttggtaccacatcattgaaaatgctatgcccttactggga Alignment from Spaln_aa2Genome TGCTTCCGGCATGCAGGCCAAACCCCTGCCAGAATGGCGGAGTCTGTTCCCGACACAGACGGAGATCCAGGTTTACCTGTGCCTGTCCAGACCAGTATAAGGGGAAATTCTGTGAAATAG gttcccattccccacccatctggtaggcgttcctttttccctcggggtagTGTTGCCAGGG---AGGCCAAACCCCTGTCAAAATGGTGGAGTGTGCTTCAGGCACAGACGAAGATTAAGGTTCACCTGGGCATCCCCTGATCAGTACAAAGGGAAATTCTGCAGAATTGgtaaatgtctttggtaccacatcattgaaaatgctatgcccttactggga Alignment from Spaln_nt2Genome TGCTTCCGGCATGCAGGCCAAACCCCTGCCAGAATGGCGGAGTCTGTTCCCGACACAGACGGAGATCCAGGTTTACCTGTGCCTGTCCAGACCAGTATAAGGGGAAATTCTGTGAAATAG gttcccattccccacccatctggtaggcgttcctttttccctcggggtagTGTT---GCCAGGGAGGCCAAACCCCTGTCAAAATGGTGGAGTGTGCTTCAGGCACAGACGAAGATTAAGGTTCACCTGGGCATCCCCTGATCAGTACAAAGGGAAATTCTGCAGAATTGgtaaatgtctttggtaccacatcattgaaaatgctatgcccttactggga Alignment from Pairagon TGCTTCCGGCATGCAGGCCAAACCCCTGCCAGAATGGCGGAGTCTGTTCCCGACACAGACGGAGATCCAGGTTTACCTGTGCCTGTCCAGACCAGTATAAGGGGAAATTCTGTGAAATAG gttcccattccccacccatctggtaggcgttcctttttccctcggggtagtgttgccag------------GGAGGCCAAACCCCTGTCAAAATGGTGGAGTGTGCTTCAGGCACAGACGAAGATTAAGGTTCACCTGGGCATCCCCTGATCAGTACAAAGGGAAATTCTGCAGAATTGgtaaatgtctttggtaccacatcattgaaaatgctatgcccttactggga Alignment from Exonerate_protein2genome AGTGCTTCCGGCATGCAGGCCAAACCCCTGCCAGAATGGCGGAGTCTGTTCCCGACACAGACGGAGATCCAGGTTTACCTGTGCCTGTCCAGACCAGTATAAGGGGAAATTCTGTGAAATAG gttcccattccccacccatctggtaggcgttcctttttccctcggGGTAGTGTTGCCAGGGAGGCCAAACCCCTGTCAAAATGGTGGAGTGTGCTTCAGGCACAGACGAAGATTAAGGTTCACCTGGGCATCCCCTGATCAGTACAAAGGGAAATTCTGCAGAATTGgtaaatgtctttggtaccacatcattgaaaatgctatgcccttactggga Alignment from Exonerate_coding2genome AGTGCTTCCGGCATGCAGGCCAAACCCCTGCCAGAATGGCGGAGTCTGTTCCCGACACAGACGGAGATCCAGGTTTACCTGTGCCTGTCCAGACCAGTATAAGGGGAAATTCTGTGAAATAG gttcccattccccacccatctggtaggcgttcctttttccctcggGGTAGTGTTGCCAGGGAGGCCAAACCCCTGTCAAAATGGTGGAGTGTGCTTCAGGCACAGACGAAGATTAAGGTTCACCTGGGCATCCCCTGATCAGTACAAAGGGAAATTCTGCAGAATTGgtaaatgtctttggtaccacatcattgaaaatgctatgcccttactggga Alignment from GeneWise TGCTTCCGGCATGCAGGCCAAACCCCTGCCAGAATGGCGGAGTCTGTTCCCGACACAGACGGAGATCCAGGTTTACCTGTGCCTGTCCAGACCAGTATAAGGGGAAATTCTGTGAAATAG gttcccattccccacccatctggtaggcgttcctttttccctcggggtagTGTTGCCAGGG---AGGCCAAACCCCTGTCAAAATGGTGGAGTGTGCTTCAGGCACAGACGAAGATTAAGGTTCACCTGGGCATCCCCTGATCAGTACAAAGGGAAATTCTGCAGAATTGgtaaatgtctttggtaccacatcattgaaaatgctatgcccttactggga #### Habp2_ID12063_9 --> 1 - 1 Original Alignment cATAAACACCAAGCATCTAAAAGTTGTACTAGGGGATCAGGACCTGAAGAAGACAGAATCCCATGAACAGACCTTCAGGGTGGAAAAAATACTGAAGTACAGTCAGTATAATGAAAGAGATGAGATTCCCCACAATGACATTg gtttgtaccgtgctgccatggctgtttgtgcttctcttctgactctgtagtATAAACACCAAACACTTAAAAGTTGCACTAGGTGATCAGGACCTGAAAAAAACAGAATCGCATGAGCAGACCTTGAGGGTGGAAAAAATACTGAAATATAGTCAGCATAATGAAAGAGATGAGATCCCTCGCAATGATGTTggtcagtgtcccataccccccggctctcttgcctttttaaaaagaactttg Alignment from CESAR cATAAACACCAAGCATCTAAAAGTTGTACTAGGGGATCAGGACCTGAAGAAGACAGAATCCCATGAACAGACCTTCAGGGTGGAAAAAATACTGAAGTACAGTCAGTATAATGAAAGAGATGAGATTCCCCACAATGACATTg gtttgtaccgtgctgccatggctgtttgtgcttctcttctgactctgtagtATAAACACCAAACACTTAAAAGTTGCACTAGGTGATCAGGACCTGAAAAAAACAGAATCGCATGAGCAGACCTTGAGGGTGGAAAAAATACTGAAATATAGTCAGCATAATGAAAGAGATGAGATCCCTCGCAATGATGTTggtcagtgtcccataccccccggctctcttgcctttttaaaaagaactttg Alignment from Spaln_aa2Genome CATAAACACCAAGCATCTAAAAGTTGTACTAGGGGATCAGGACCTGAAGAAGACAGAATCCCATGAACAGACCTTCAGGGTGGAAAAAATACTGAAGTACAGTCAGTATAATGAAAGAGATGAGATTCCCCACAATGACATTG gtttgtaccgtgctgccatggctgtttgtgcttctcttctgactctgtagTATAAACACCAAACACTTAAAAGTTGCACTAGGTGATCAGGACCTGAAAAAAACAGAATCGCATGAGCAGACCTTGAGGGTGGAAAAAATACTGAAATATAGTCAGCATAATGAAAGAGATGAGATCCCTCGCAATGATGTTGgtcagtgtcccataccccccggctctcttgcctttttaaaaagaactttg Alignment from Spaln_nt2Genome CATAAACACCAAGCATCTAAAAGTTGTACTAGGGGATCAGGACCTGAAGAAGACAGAATCCCATGAACAGACCTTCAGGGTGGAAAAAATACTGAAGTACAGTCAGTATAATGAAAGAGATGAGATTCCCCACAATGACATTG gtttgtaccgtgctgccatggctgtttgtgcttctcttctgactctgtagTATAAACACCAAACACTTAAAAGTTGCACTAGGTGATCAGGACCTGAAAAAAACAGAATCGCATGAGCAGACCTTGAGGGTGGAAAAAATACTGAAATATAGTCAGCATAATGAAAGAGATGAGATCCCTCGCAATGATGTTGgtcagtgtcccataccccccggctctcttgcctttttaaaaagaactttg Alignment from Pairagon CATAAACACCAAGCATCTAAAAGTTGTACTAGGGGATCAGGACCTGAAGAAGACAGAATCCCATGAACAGACCTTCAGGGTGGAAAAAATACTGAAGTACAGTCAGTATAATGAAAGAGATGAGATTCCCCACAATGACATTG gtttgtaccgtgctgccatggctgtttgtgcttctcttctgactctgtagTATAAACACCAAACACTTAAAAGTTGCACTAGGTGATCAGGACCTGAAAAAAACAGAATCGCATGAGCAGACCTTGAGGGTGGAAAAAATACTGAAATATAGTCAGCATAATGAAAGAGATGAGATCCCTCGCAATGATGTTGgtcagtgtcccataccccccggctctcttgcctttttaaaaagaactttg Alignment from Exonerate_protein2genome CATAAACACCAAGCATCTAAAAGTTGTACTAGGGGATCAGGACCTGAAGAAGACAGAATCCCATGAACAGACCTTCAGGGTGGAAAAAATACTGAAGTACAGTCAGTATAATGAAAGAGATGAGATTCCCCACAATGACATTG gtttgtaccgtgctgccatggctgtttgtgcttctcttctgactctgtagTATAAACACCAAACACTTAAAAGTTGCACTAGGTGATCAGGACCTGAAAAAAACAGAATCGCATGAGCAGACCTTGAGGGTGGAAAAAATACTGAAATATAGTCAGCATAATGAAAGAGATGAGATCCCTCGCAATGATGTTGgtcagtgtcccataccccccggctctcttgcctttttaaaaagaactttg Alignment from Exonerate_coding2genome CATAAACACCAAGCATCTAAAAGTTGTACTAGGGGATCAGGACCTGAAGAAGACAGAATCCCATGAACAGACCTTCAGGGTGGAAAAAATACTGAAGTACAGTCAGTATAATGAAAGAGATGAGATTCCCCACAATGACATTG gtttgtaccgtgctgccatggctgtttgtgcttctcttctgactctgtagTATAAACACCAAACACTTAAAAGTTGCACTAGGTGATCAGGACCTGAAAAAAACAGAATCGCATGAGCAGACCTTGAGGGTGGAAAAAATACTGAAATATAGTCAGCATAATGAAAGAGATGAGATCCCTCGCAATGATGTTGgtcagtgtcccataccccccggctctcttgcctttttaaaaagaactttg Alignment from GeneWise CATAAACACCAAGCATCTAAAAGTTGTACTAGGGGATCAGGACCTGAAGAAGACAGAATCCCATGAACAGACCTTCAGGGTGGAAAAAATACTGAAGTACAGTCAGTATAATGAAAGAGATGAGATTCCCCACAATGACATTG gtttgtaccgtgctgccatggctgtttgtgcttctcttctgactctgtagTATAAACACCAAACACTTAAAAGTTGCACTAGGTGATCAGGACCTGAAAAAAACAGAATCGCATGAGCAGACCTTGAGGGTGGAAAAAATACTGAAATATAGTCAGCATAATGAAAGAGATGAGATCCCTCGCAATGATGTTGgtcagtgtcccataccccccggctctcttgcctttttaaaaagaactttg #### Habp2_ID12065_11 --> 2 - 0 Original Alignment ggGAAGGGTCCCGCCAGCTCCTGGATGCTAAAGTCAAGCTAATCGCTAACCCTTTGTGCAACTCCCGACAACTCTATGACCACACCATCGATGACAGTATGATTTGTGCGGGGAACCTTCAGAAGCCCGGATCAGACACCTGCCAG catacatatcttttttgctatcactgtactcgggtcattctgtccctcaggtGAAGGCTCACACCAGCTCCTGGATCTTAAAGTTAAGTTAATTGCTAACCCTCTGTGTAACTCACGTAAGCTCTATGACCACACCATTGATGACAGCATGGTATGTGCAGGGAACCTTCAGAAACCAGGTTCAGACACTTGCCAAgtaattactctcatccaaagctcctatataatagccatctcactgggtga Alignment from CESAR ggGAAGGGTCCCGCCAGCTCCTGGATGCTAAAGTCAAGCTAATCGCTAACCCTTTGTGCAACTCCCGACAACTCTATGACCACACCATCGATGACAGTATGATTTGTGCGGGGAACCTTCAGAAGCCCGGATCAGACACCTGCCAG catacatatcttttttgctatcactgtactcgggtcattctgtccctcaggtGAAGGCTCACACCAGCTCCTGGATCTTAAAGTTAAGTTAATTGCTAACCCTCTGTGTAACTCACGTAAGCTCTATGACCACACCATTGATGACAGCATGGTATGTGCAGGGAACCTTCAGAAACCAGGTTCAGACACTTGCCAAgtaattactctcatccaaagctcctatataatagccatctcactgggtga Alignment from Spaln_aa2Genome GGGAAGGGTCCCGCCAGCTCCTGGATGCTAAAGTCAAGCTAATCGCTAACCCTTTGTGCAACTCCCGACAACTCTATGACCACACCATCGATGACAGTATGATTTGTGCGGGGAACCTTCAGAAGCCCGGATCAGACACCTGCCAG catacatatcttttttgctatcactgtactcgggtcattctgtccctcagGTGAAGGCTCACACCAGCTCCTGGATCTTAAAGTTAAGTTAATTGCTAACCCTCTGTGTAACTCACGTAAGCTCTATGACCACACCATTGATGACAGCATGGTATGTGCAGGGAACCTTCAGAAACCAGGTTCAGACACTTGCCAAgtaattactctcatccaaagctcctatataatagccatctcactgggtga Alignment from Spaln_nt2Genome GGGAAGGGTCCCGCCAGCTCCTGGATGCTAAAGTCAAGCTAATCGCTAACCCTTTGTGCAACTCCCGACAACTCTATGACCACACCATCGATGACAGTATGATTTGTGCGGGGAACCTTCAGAAGCCCGGATCAGACACCTGCCAG catacatatcttttttgctatcactgtactcgggtcattctgtccctcagGTGAAGGCTCACACCAGCTCCTGGATCTTAAAGTTAAGTTAATTGCTAACCCTCTGTGTAACTCACGTAAGCTCTATGACCACACCATTGATGACAGCATGGTATGTGCAGGGAACCTTCAGAAACCAGGTTCAGACACTTGCCAAgtaattactctcatccaaagctcctatataatagccatctcactgggtga Alignment from Pairagon GGGAAGGGTCCCGCCAGCTCCTGGATGCTAAAGTCAAGCTAATCGCTAACCCTTTGTGCAACTCCCGACAACTCTATGACCACACCATCGATGACAGTATGATTTGTGCGGGGAACCTTCAGAAGCCCGGATCAGACACCTGCCAG catacatatcttttttgctatcactgtactcgggtcattctgtccctcagGTGAAGGCTCACACCAGCTCCTGGATCTTAAAGTTAAGTTAATTGCTAACCCTCTGTGTAACTCACGTAAGCTCTATGACCACACCATTGATGACAGCATGGTATGTGCAGGGAACCTTCAGAAACCAGGTTCAGACACTTGCCAAgtaattactctcatccaaagctcctatataatagccatctcactgggtga Alignment from Exonerate_protein2genome GGGAAGGGTCCCGCCAGCTCCTGGATGCTAAAGTCAAGCTAATCGCTAACCCTTTGTGCAACTCCCGACAACTCTATGACCACACCATCGATGACAGTATGATTTGTGCGGGGAACCTTCAGAAGCCCGGATCAGACACCTGCCAG catacatatcttttttgctatcactgtactcgggtcattctgtccctcagGTGAAGGCTCACACCAGCTCCTGGATCTTAAAGTTAAGTTAATTGCTAACCCTCTGTGTAACTCACGTAAGCTCTATGACCACACCATTGATGACAGCATGGTATGTGCAGGGAACCTTCAGAAACCAGGTTCAGACACTTGCCAAgtaattactctcatccaaagctcctatataatagccatctcactgggtga Alignment from Exonerate_coding2genome GGGAAGGGTCCCGCCAGCTCCTGGATGCTAAAGTCAAGCTAATCGCTAACCCTTTGTGCAACTCCCGACAACTCTATGACCACACCATCGATGACAGTATGATTTGTGCGGGGAACCTTCAGAAGCCCGGATCAGACACCTGCCAG catacatatcttttttgctatcactgtactcgggtcattctgtccctcagGTGAAGGCTCACACCAGCTCCTGGATCTTAAAGTTAAGTTAATTGCTAACCCTCTGTGTAACTCACGTAAGCTCTATGACCACACCATTGATGACAGCATGGTATGTGCAGGGAACCTTCAGAAACCAGGTTCAGACACTTGCCAAgtaattactctcatccaaagctcctatataatagccatctcactgggtga Alignment from GeneWise GGGAAGGGTCCCGCCAGCTCCTGGATGCTAAAGTCAAGCTAATCGCTAACCCTTTGTGCAACTCCCGACAACTCTATGACCACACCATCGATGACAGTATGATTTGTGCGGGGAACCTTCAGAAGCCCGGATCAGACACCTGCCAG catacatatcttttttgctatcactgtactcgggtcattctgtccctcagGTGAAGGCTCACACCAGCTCCTGGATCTTAAAGTTAAGTTAATTGCTAACCCTCTGTGTAACTCACGTAAGCTCTATGACCACACCATTGATGACAGCATGGTATGTGCAGGGAACCTTCAGAAACCAGGTTCAGACACTTGCCAAgtaattactctcatccaaagctcctatataatagccatctcactgggtga #### Hectd2_ID7148_6 --> 0 - 2 Original Alignment CCTCAAGATATCCAGAAGTCAGTATTGAAGGGAATCATTAACAGCTTGTTACAAGAATGGAAAgg tagcagaattataaaatgttttcatctggctcctgatctttctcttacagCCTCAAGATATTCAGAAGTCAGTATTGAAGGGAATCATCAACAGCTTGTTACAAGAATGGAAGgggtaagcgtgtttggcagctaaactggggcaggtccccacactactttcaa Alignment from CESAR CCTCAAGATATCCAGAAGTCAGTATTGAAGGGAATCATTAACAGCTTGTTACAAGAATGGAAAgg tagcagaattataaaatgttttcatctggctcctgatctttctcttacagCCTCAAGATATTCAGAAGTCAGTATTGAAGGGAATCATCAACAGCTTGTTACAAGAATGGAAGgggtaagcgtgtttggcagctaaactggggcaggtccccacactactttcaa Alignment from Spaln_aa2Genome CCTCAAGATATCCAGAAGTCAGTATTGAAGGGAATCATTAACAGCTTGTTACAAGAATGGAAAGG tagcagaattataaaatgttttcatctggctcctgatctttctcttacagCCTCAAGATATTCAGAAGTCAGTATTGAAGGGAATCATCAACAGCTTGTTACAAGAATGGAAGGGgtaagcgtgtttggcagctaaactggggcaggtccccacactactttcaa Alignment from Spaln_nt2Genome CCTCAAGATATCCAGAAGTCAGTATTGAAGGGAATCATTAACAGCTTGTTACAAGAATGGAAAGG tagcagaattataaaatgttttcatctggctcctgatctttctcttacagCCTCAAGATATTCAGAAGTCAGTATTGAAGGGAATCATCAACAGCTTGTTACAAGAATGGAAGGGgtaagcgtgtttggcagctaaactggggcaggtccccacactactttcaa Alignment from Pairagon CCTCAAGATATCCAGAAGTCAGTATTGAAGGGAATCATTAACAGCTTGTTACAAGAATGGAAAGG tagcagaattataaaatgttttcatctggctcctgatctttctcttacagCCTCAAGATATTCAGAAGTCAGTATTGAAGGGAATCATCAACAGCTTGTTACAAGAATGGAAGGGgtaagcgtgtttggcagctaaactggggcaggtccccacactactttcaa Alignment from Exonerate_protein2genome CCTCAAGATATCCAGAAGTCAGTATTGAAGGGAATCATTAACAGCTTGTTACAAGAATGGAAAGG tagcagaattataaaatgttttcatctggctcctgatctttctcttacagCCTCAAGATATTCAGAAGTCAGTATTGAAGGGAATCATCAACAGCTTGTTACAAGAATGGAAGGGgtaagcgtgtttggcagctaaactggggcaggtccccacactactttcaa Alignment from Exonerate_coding2genome CCTCAAGATATCCAGAAGTCAGTATTGAAGGGAATCATTAACAGCTTGTTACAAGAATGGAAAGG tagcagaattataaaatgttttcatctggctcctgatctttctcttacagCCTCAAGATATTCAGAAGTCAGTATTGAAGGGAATCATCAACAGCTTGTTACAAGAATGGAAGGGgtaagcgtgtttggcagctaaactggggcaggtccccacactactttcaa Alignment from GeneWise CCTCAAGATATCCAGAAGTCAGTATTGAAGGGAATCATTAACAGCTTGTTACAAGAATGGAAAGG tagcagaattataaaatgttttcatctggctcctgatctttctcttacagCCTCAAGATATTCAGAAGTCAGTATTGAAGGGAATCATCAACAGCTTGTTACAAGAATGGAAGGGgtaagcgtgtttggcagctaaactggggcaggtccccacactactttcaa #### Hectd2_ID7152_10 --> 2 - 2 Original Alignment acACTGCCAACAATTTGGTTCACCCTCCCCTCGTTCCTTACACTGATTTCTATAATTCTACCCTGGATCACATTGATCTCATGGAAGAGTATCACACGTGGCAGAGCTTTGGGAACTCTCACag gaggccttgatgtctatactgcaggatggagctgattctgtcacccacagacACTGCCAACAATTTGGTTCACACCCCACTCGTACCTTACACTGATTTCTACAATTCTACCCTGGATCGCATTGATCTCATGGAAGAATATCACAAATGGCAGAGCTTTGGTAACTCTCACaggtaaccctgctggctggtacaaatggttatccaacagctgaggggtttgc Alignment from CESAR acACTGCCAACAATTTGGTTCACCCTCCCCTCGTTCCTTACACTGATTTCTATAATTCTACCCTGGATCACATTGATCTCATGGAAGAGTATCACACGTGGCAGAGCTTTGGGAACTCTCACag gaggccttgatgtctatactgcaggatggagctgattctgtcacccacagacACTGCCAACAATTTGGTTCACACCCCACTCGTACCTTACACTGATTTCTACAATTCTACCCTGGATCGCATTGATCTCATGGAAGAATATCACAAATGGCAGAGCTTTGGTAACTCTCACaggtaaccctgctggctggtacaaatggttatccaacagctgaggggtttgc Alignment from Spaln_aa2Genome ACACTGCCAACAATTTGGTTCACCCTCCCCTCGTTCCTTACACTGATTTCTATAATTCTACCCTGGATCACATTGATCTCATGGAAGAGTATCACACGTGGCAGAGCTTTGGGAACTCTCACAG gaggccttgatgtctatactgcaggatggagctgattctgtcacccacagACACTGCCAACAATTTGGTTCACACCCCACTCGTACCTTACACTGATTTCTACAATTCTACCCTGGATCGCATTGATCTCATGGAAGAATATCACAAATGGCAGAGCTTTGGTAACTCTCACAGgtaaccctgctggctggtacaaatggttatccaacagctgaggggtttgc Alignment from Spaln_nt2Genome ACACTGCCAACAATTTGGTTCACCCTCCCCTCGTTCCTTACACTGATTTCTATAATTCTACCCTGGATCACATTGATCTCATGGAAGAGTATCACACGTGGCAGAGCTTTGGGAACTCTCACAG gaggccttgatgtctatactgcaggatggagctgattctgtcacccacagACACTGCCAACAATTTGGTTCACACCCCACTCGTACCTTACACTGATTTCTACAATTCTACCCTGGATCGCATTGATCTCATGGAAGAATATCACAAATGGCAGAGCTTTGGTAACTCTCACAGgtaaccctgctggctggtacaaatggttatccaacagctgaggggtttgc Alignment from Pairagon ACACTGCCAACAATTTGGTTCACCCTCCCCTCGTTCCTTACACTGATTTCTATAATTCTACCCTGGATCACATTGATCTCATGGAAGAGTATCACACGTGGCAGAGCTTTGGGAACTCTCACAG gaggccttgatgtctatactgcaggatggagctgattctgtcacccacagACACTGCCAACAATTTGGTTCACACCCCACTCGTACCTTACACTGATTTCTACAATTCTACCCTGGATCGCATTGATCTCATGGAAGAATATCACAAATGGCAGAGCTTTGGTAACTCTCACAGgtaaccctgctggctggtacaaatggttatccaacagctgaggggtttgc Alignment from Exonerate_protein2genome ACACTGCCAACAATTTGGTTCACCCTCCCCTCGTTCCTTACACTGATTTCTATAATTCTACCCTGGATCACATTGATCTCATGGAAGAGTATCACACGTGGCAGAGCTTTGGGAACTCTCACAG gaggccttgatgtctatactgcaggatggagctgattctgtcacccacagACACTGCCAACAATTTGGTTCACACCCCACTCGTACCTTACACTGATTTCTACAATTCTACCCTGGATCGCATTGATCTCATGGAAGAATATCACAAATGGCAGAGCTTTGGTAACTCTCACAGgtaaccctgctggctggtacaaatggttatccaacagctgaggggtttgc Alignment from Exonerate_coding2genome ACACTGCCAACAATTTGGTTCACCCTCCCCTCGTTCCTTACACTGATTTCTATAATTCTACCCTGGATCACATTGATCTCATGGAAGAGTATCACACGTGGCAGAGCTTTGGGAACTCTCACAG gaggccttgatgtctatactgcaggatggagctgattctgtcacccacagACACTGCCAACAATTTGGTTCACACCCCACTCGTACCTTACACTGATTTCTACAATTCTACCCTGGATCGCATTGATCTCATGGAAGAATATCACAAATGGCAGAGCTTTGGTAACTCTCACAGgtaaccctgctggctggtacaaatggttatccaacagctgaggggtttgc Alignment from GeneWise ACACTGCCAACAATTTGGTTCACCCTCCCCTCGTTCCTTACACTGATTTCTATAATTCTACCCTGGATCACATTGATCTCATGGAAGAGTATCACACGTGGCAGAGCTTTGGGAACTCTCACAG gaggccttgatgtctatactgcaggatggagctgattctgtcacccacagACACTGCCAACAATTTGGTTCACACCCCACTCGTACCTTACACTGATTTCTACAATTCTACCCTGGATCGCATTGATCTCATGGAAGAATATCACAAATGGCAGAGCTTTGGTAACTCTCACAGgtaaccctgctggctggtacaaatggttatccaacagctgaggggtttgc #### Hectd2_ID7153_11 --> 1 - 0 Original Alignment cAGGTTTTCCTTCTGTCAGTACCCATTCGTTATTTCTATAGCTGCAAAAAAAATCATTATTCAAAGAGACTCAGAACAACAGATGATAAGCATCGCAAGG ccttatcccctcttgccaataataaatgcttatgcctctgttctgggtagcAGG---TCCTTCTGTCAATACCCATTTGTCATTTCTATAACTGTAAAAAAAATTATTATTAAAAGAGATTCTGAACAACAGATGATAAGCATTACTAGAgtattataaaaacaatcgtaccacatatatagttttagtagttaatagca Alignment from CESAR cAGGTTTTCCTTCTGTCAGTACCCATTCGTTATTTCTATAGCTGCAAAAAAAATCATTATTCAAAGAGACTCAGAACAACAGATGATAAGCATCGCAAGG ccttatcccctcttgccaataataaatgcttatgcctctgttctgggtagcAGG---TCCTTCTGTCAATACCCATTTGTCATTTCTATAACTGTAAAAAAAATTATTATTAAAAGAGATTCTGAACAACAGATGATAAGCATTACTAGAgtattataaaaacaatcgtaccacatatatagttttagtagttaatagca Alignment from Spaln_aa2Genome CAGGTTTTCCTTCTGTCAGTACCCATTCGTTATTTCTATAGCTGCAAAAAAAATCATTATTCAAAGAGACTCAGAACAACAGATGATAAGCATCGCAAGG ccttatcccctcttgccaataataaatgcttatgcctctgttctgggtagCAGG---TCCTTCTGTCAATACCCATTTGTCATTTCTATAACTGTAAAAAAAATTATTATTAAAAGAGATTCTGAACAACAGATGATAAGCATTACTAGAgtattataaaaacaatcgtaccacatatatagttttagtagttaatagca Alignment from Spaln_nt2Genome CAGGTTTTCCTTCTGTCAGTACCCATTCGTTATTTCTATAGCTGCAAAAAAAATCATTATTCAAAGAGACTCAGAACAACAGATGATAAGCATCGCAAGG ccttatcccctcttgccaataataaatgcttatgcctctgttctgggtagCAGG---TCCTTCTGTCAATACCCATTTGTCATTTCTATAACTGTAAAAAAAATTATTATTAAAAGAGATTCTGAACAACAGATGATAAGCATTACTAGAgtattataaaaacaatcgtaccacatatatagttttagtagttaatagca Alignment from Pairagon CAGGTTTTCCTTCTGTCAGTACCCATTCGTTATTTCTATAGCTGCAAAAAAAATCATTATTCAAAGAGACTCAGAACAACAGATGATAAGCATCGCAAGG ccttatcccctcttgccaataataaatgcttatgcctctgttctgggtagCAGG---TCCTTCTGTCAATACCCATTTGTCATTTCTATAACTGTAAAAAAAATTATTATTAAAAGAGATTCTGAACAACAGATGATAAGCATTACTAGAgtattataaaaacaatcgtaccacatatatagttttagtagttaatagca Alignment from Exonerate_protein2genome CAGGTTTTCCTTCTGTCAGTACCCATTCGTTATTTCTATAGCTGCAAAAAAAATCATTATTCAAAGAGACTCAGAACAACAGATGATAAGCATCGCAAGG ccttatcccctcttgccaataataaatgcttatgcctctgttctgggtagCAGG---TCCTTCTGTCAATACCCATTTGTCATTTCTATAACTGTAAAAAAAATTATTATTAAAAGAGATTCTGAACAACAGATGATAAGCATTACTAGAgtattataaaaacaatcgtaccacatatatagttttagtagttaatagca Alignment from Exonerate_coding2genome CAGGTTTTCCTTCTGTCAGTACCCATTCGTTATTTCTATAGCTGCAAAAAAAATCATTATTCAAAGAGACTCAGAACAACAGATGATAAGCATCGCAAGG ccttatcccctcttgccaataataaatgcttatgcctctgttctgggtagCAGG---TCCTTCTGTCAATACCCATTTGTCATTTCTATAACTGTAAAAAAAATTATTATTAAAAGAGATTCTGAACAACAGATGATAAGCATTACTAGAgtattataaaaacaatcgtaccacatatatagttttagtagttaatagca Alignment from GeneWise CAGGTTTTCCTTCTGTCAGTACCCATTCGTTATTTCTATAGCTGCAAAAAAAATCATTATTCAAAGAGACTCAGAACAACAGATGATAAGCATCGCAAGG ccttatcccctcttgccaataataaatgcttatgcctctgttctgggtagCAGG---TCCTTCTGTCAATACCCATTTGTCATTTCTATAACTGTAAAAAAAATTATTATTAAAAGAGATTCTGAACAACAGATGATAAGCATTACTAGAgtattataaaaacaatcgtaccacatatatagttttagtagttaatagca #### Hectd2_ID7159_15 --> 0 - 0 Original Alignment CTCATGGGACTAGCTGTTTATAACAGCATCACCTTGGATATTCGTTTTCCTCCCTGCTGTTACAAAAAATTACTGAGCCCTCCTGTCGTACCAAGTGATCAGAGTACACCAGTAGGCATCTGCAGTGTTACCATTGACGACTTGTGCCAGGTTATGCCT gaccccatgtttgtaacctaatgttcattgtgctgtgggctccaatccagCTGATGGGTTTAGCTGTGTATAACAGCATAACTTTGGATATTCATTTTCCTCCTTGCTGCTACAAAAAACTACTGAGCCCTCCTGTTCTACCGAGTGATCAGAGTACACCTGTAGGCATATGCAGTGTTACCATCGATGATTTATGCCAGGTTATGCCTgttaaattattataattatcttgctggatggttccaaccttcaacctgtt Alignment from CESAR CTCATGGGACTAGCTGTTTATAACAGCATCACCTTGGATATTCGTTTTCCTCCCTGCTGTTACAAAAAATTACTGAGCCCTCCTGTCGTACCAAGTGATCAGAGTACACCAGTAGGCATCTGCAGTGTTACCATTGACGACTTGTGCCAGGTTATGCCT gaccccatgtttgtaacctaatgttcattgtgctgtgggctccaatccagCTGATGGGTTTAGCTGTGTATAACAGCATAACTTTGGATATTCATTTTCCTCCTTGCTGCTACAAAAAACTACTGAGCCCTCCTGTTCTACCGAGTGATCAGAGTACACCTGTAGGCATATGCAGTGTTACCATCGATGATTTATGCCAGGTTATGCCTgttaaattattataattatcttgctggatggttccaaccttcaacctgtt Alignment from Spaln_aa2Genome CTCATGGGACTAGCTGTTTATAACAGCATCACCTTGGATATTCGTTTTCCTCCCTGCTGTTACAAAAAATTACTGAGCCCTCCTGTCGTACCAAGTGATCAGAGTACACCAGTAGGCATCTGCAGTGTTACCATTGACGACTTGTGCCAGGTTATGCCT gaccccatgtttgtaacctaatgttcattgtgctgtgggctccaatccagCTGATGGGTTTAGCTGTGTATAACAGCATAACTTTGGATATTCATTTTCCTCCTTGCTGCTACAAAAAACTACTGAGCCCTCCTGTTCTACCGAGTGATCAGAGTACACCTGTAGGCATATGCAGTGTTACCATCGATGATTTATGCCAGGTTATGCCTgttaaattattataattatcttgctggatggttccaaccttcaacctgtt Alignment from Spaln_nt2Genome CTCATGGGACTAGCTGTTTATAACAGCATCACCTTGGATATTCGTTTTCCTCCCTGCTGTTACAAAAAATTACTGAGCCCTCCTGTCGTACCAAGTGATCAGAGTACACCAGTAGGCATCTGCAGTGTTACCATTGACGACTTGTGCCAGGTTATGCCT gaccccatgtttgtaacctaatgttcattgtgctgtgggctccaatccagCTGATGGGTTTAGCTGTGTATAACAGCATAACTTTGGATATTCATTTTCCTCCTTGCTGCTACAAAAAACTACTGAGCCCTCCTGTTCTACCGAGTGATCAGAGTACACCTGTAGGCATATGCAGTGTTACCATCGATGATTTATGCCAGGTTATGCCTgttaaattattataattatcttgctggatggttccaaccttcaacctgtt Alignment from Pairagon CTCATGGGACTAGCTGTTTATAACAGCATCACCTTGGATATTCGTTTTCCTCCCTGCTGTTACAAAAAATTACTGAGCCCTCCTGTCGTACCAAGTGATCAGAGTACACCAGTAGGCATCTGCAGTGTTACCATTGACGACTTGTGCCAGGTTATGCCT gaccccatgtttgtaacctaatgttcattgtgctgtgggctccaatccagCTGATGGGTTTAGCTGTGTATAACAGCATAACTTTGGATATTCATTTTCCTCCTTGCTGCTACAAAAAACTACTGAGCCCTCCTGTTCTACCGAGTGATCAGAGTACACCTGTAGGCATATGCAGTGTTACCATCGATGATTTATGCCAGGTTATGCCTgttaaattattataattatcttgctggatggttccaaccttcaacctgtt Alignment from Exonerate_protein2genome CTCATGGGACTAGCTGTTTATAACAGCATCACCTTGGATATTCGTTTTCCTCCCTGCTGTTACAAAAAATTACTGAGCCCTCCTGTCGTACCAAGTGATCAGAGTACACCAGTAGGCATCTGCAGTGTTACCATTGACGACTTGTGCCAGGTTATGCCT gaccccatgtttgtaacctaatgttcattgtgctgtgggctccaatccagCTGATGGGTTTAGCTGTGTATAACAGCATAACTTTGGATATTCATTTTCCTCCTTGCTGCTACAAAAAACTACTGAGCCCTCCTGTTCTACCGAGTGATCAGAGTACACCTGTAGGCATATGCAGTGTTACCATCGATGATTTATGCCAGGTTATGCCTgttaaattattataattatcttgctggatggttccaaccttcaacctgtt Alignment from Exonerate_coding2genome CTCATGGGACTAGCTGTTTATAACAGCATCACCTTGGATATTCGTTTTCCTCCCTGCTGTTACAAAAAATTACTGAGCCCTCCTGTCGTACCAAGTGATCAGAGTACACCAGTAGGCATCTGCAGTGTTACCATTGACGACTTGTGCCAGGTTATGCCT gaccccatgtttgtaacctaatgttcattgtgctgtgggctccaatccagCTGATGGGTTTAGCTGTGTATAACAGCATAACTTTGGATATTCATTTTCCTCCTTGCTGCTACAAAAAACTACTGAGCCCTCCTGTTCTACCGAGTGATCAGAGTACACCTGTAGGCATATGCAGTGTTACCATCGATGATTTATGCCAGGTTATGCCTgttaaattattataattatcttgctggatggttccaaccttcaacctgtt Alignment from GeneWise CTCATGGGACTAGCTGTTTATAACAGCATCACCTTGGATATTCGTTTTCCTCCCTGCTGTTACAAAAAATTACTGAGCCCTCCTGTCGTACCAAGTGATCAGAGTACACCAGTAGGCATCTGCAGTGTTACCATTGACGACTTGTGCCAGGTTATGCCT gaccccatgtttgtaacctaatgttcattgtgctgtgggctccaatccagCTGATGGGTTTAGCTGTGTATAACAGCATAACTTTGGATATTCATTTTCCTCCTTGCTGCTACAAAAAACTACTGAGCCCTCCTGTTCTACCGAGTGATCAGAGTACACCTGTAGGCATATGCAGTGTTACCATCGATGATTTATGCCAGGTTATGCCTgttaaattattataattatcttgctggatggttccaaccttcaacctgtt #### Hectd2_ID7161_17 --> 0 - 1 Original Alignment GTTTTTCAAGAAGAATTTGGAGTAATTAAATCCTATAACTTAAAACCAGGGGGTGATAAGATTCCAGTTACCAATCAGAATAGAAGAg ttttcatttctttccttcccacattaacaccctaccttgccccactgcagGTTTTTCAAGAAGAATTTGGAATAATTAAGTCCTATAACCTAAAGCCTGGGGGCGATAAAATTCCAGTTACCAATCAAAACAGGAGGggtacggccaacatgcactccatggcttatggctaagatagcagatttata Alignment from CESAR GTTTTTCAAGAAGAATTTGGAGTAATTAAATCCTATAACTTAAAACCAGGGGGTGATAAGATTCCAGTTACCAATCAGAATAGAAGAg ttttcatttctttccttcccacattaacaccctaccttgccccactgcagGTTTTTCAAGAAGAATTTGGAATAATTAAGTCCTATAACCTAAAGCCTGGGGGCGATAAAATTCCAGTTACCAATCAAAACAGGAGGggtacggccaacatgcactccatggcttatggctaagatagcagatttata Alignment from Spaln_aa2Genome GTTTTTCAAGAAGAATTTGGAGTAATTAAATCCTATAACTTAAAACCAGGGGGTGATAAGATTCCAGTTACCAATCAGAATAGAAGAG ttttcatttctttccttcccacattaacaccctaccttgccccactgcagGTTTTTCAAGAAGAATTTGGAATAATTAAGTCCTATAACCTAAAGCCTGGGGGCGATAAAATTCCAGTTACCAATCAAAACAGGAGGGgtacggccaacatgcactccatggcttatggctaagatagcagatttata Alignment from Spaln_nt2Genome GTTTTTCAAGAAGAATTTGGAGTAATTAAATCCTATAACTTAAAACCAGGGGGTGATAAGATTCCAGTTACCAATCAGAATAGAAGAG ttttcatttctttccttcccacattaacaccctaccttgccccactgcagGTTTTTCAAGAAGAATTTGGAATAATTAAGTCCTATAACCTAAAGCCTGGGGGCGATAAAATTCCAGTTACCAATCAAAACAGGAGGGgtacggccaacatgcactccatggcttatggctaagatagcagatttata Alignment from Pairagon GTTTTTCAAGAAGAATTTGGAGTAATTAAATCCTATAACTTAAAACCAGGGGGTGATAAGATTCCAGTTACCAATCAGAATAGAAGAG ttttcatttctttccttcccacattaacaccctaccttgccccactgcagGTTTTTCAAGAAGAATTTGGAATAATTAAGTCCTATAACCTAAAGCCTGGGGGCGATAAAATTCCAGTTACCAATCAAAACAGGAGGGgtacggccaacatgcactccatggcttatggctaagatagcagatttata Alignment from Exonerate_protein2genome GTTTTTCAAGAAGAATTTGGAGTAATTAAATCCTATAACTTAAAACCAGGGGGTGATAAGATTCCAGTTACCAATCAGAATAGAAGAG ttttcatttctttccttcccacattaacaccctaccttgccccactgcagGTTTTTCAAGAAGAATTTGGAATAATTAAGTCCTATAACCTAAAGCCTGGGGGCGATAAAATTCCAGTTACCAATCAAAACAGGAGGGgtacggccaacatgcactccatggcttatggctaagatagcagatttata Alignment from Exonerate_coding2genome GTTTTTCAAGAAGAATTTGGAGTAATTAAATCCTATAACTTAAAACCAGGGGGTGATAAGATTCCAGTTACCAATCAGAATAGAAGAG ttttcatttctttccttcccacattaacaccctaccttgccccactgcagGTTTTTCAAGAAGAATTTGGAATAATTAAGTCCTATAACCTAAAGCCTGGGGGCGATAAAATTCCAGTTACCAATCAAAACAGGAGGGgtacggccaacatgcactccatggcttatggctaagatagcagatttata Alignment from GeneWise GTTTTTCAAGAAGAATTTGGAGTAATTAAATCCTATAACTTAAAACCAGGGGGTGATAAGATTCCAGTTACCAATCAGAATAGAAGAG ttttcatttctttccttcccacattaacaccctaccttgccccactgcagGTTTTTCAAGAAGAATTTGGAATAATTAAGTCCTATAACCTAAAGCCTGGGGGCGATAAAATTCCAGTTACCAATCAAAACAGGAGGGgtacggccaacatgcactccatggcttatggctaagatagcagatttata #### Hells_ID7698_5 --> 2 - 0 Original Alignment tcATGAAAAAGAAAAGAGGAAGAGAAGATGAATCTTATAATATTTCAGAGGTCATGTCAAAAGAG gtaggtagagatcttgttaactcacataaatgtattttctgtccctttagttATAAAGAAAAAAAGGGGGAGGGAAGATGAGCCTTACAATATCTCGGAGGTCATGTCTAAGGATgtatatagtttttgtaatagattgaagtgctttttgaggaactacaacaa Alignment from CESAR tcATGAAAAAGAAAAGAGGAAGAGAAGATGAATCTTATAATATTTCAGAGGTCATGTCAAAAGAG gtaggtagagatcttgttaactcacataaatgtattttctgtccctttagttATAAAGAAAAAAAGGGGGAGGGAAGATGAGCCTTACAATATCTCGGAGGTCATGTCTAAGGATgtatatagtttttgtaatagattgaagtgctttttgaggaactacaacaa Alignment from Spaln_aa2Genome TCATGAAAAAGAAAAGAGGAAGAGAAGATGAATCTTATAATATTTCAGAGGTCATGTCAAAAGAG gtaggtagagatcttgttaactcacataaatgtattttctgtccctttagTTATAAAGAAAAAAAGGGGGAGGGAAGATGAGCCTTACAATATCTCGGAGGTCATGTCTAAGGATgtatatagtttttgtaatagattgaagtgctttttgaggaactacaacaa Alignment from Spaln_nt2Genome TCATGAAAAAGAAAAGAGGAAGAGAAGATGAATCTTATAATATTTCAGAGGTCATGTCAAAAGAG gtaggtagagatcttgttaactcacataaatgtattttctgtccctttagTTATAAAGAAAAAAAGGGGGAGGGAAGATGAGCCTTACAATATCTCGGAGGTCATGTCTAAGGATgtatatagtttttgtaatagattgaagtgctttttgaggaactacaacaa Alignment from Pairagon TCATGAAAAAGAAAAGAGGAAGAGAAGATGAATCTTATAATATTTCAGAGGTCATGTCAAAAGAG gtaggtagagatcttgttaactcacataaatgtattttctgtccctttagTTATAAAGAAAAAAAGGGGGAGGGAAGATGAGCCTTACAATATCTCGGAGGTCATGTCTAAGGATgtatatagtttttgtaatagattgaagtgctttttgaggaactacaacaa Alignment from Exonerate_protein2genome TCATGAAAAAGAAAAGAGGAAGAGAAGATGAATCTTATAATATTTCAGAGGTCATGTCAAAAGAG gtaggtagagatcttgttaactcacataaatgtattttctgtccctttagTTATAAAGAAAAAAAGGGGGAGGGAAGATGAGCCTTACAATATCTCGGAGGTCATGTCTAAGGATgtatatagtttttgtaatagattgaagtgctttttgaggaactacaacaa Alignment from Exonerate_coding2genome GTTGATGGGAATGGAGAGAAACCAGTCATGAAAAAGAAAAGAGGAAGAGAAGATGAATCTTATAATATTTCAGAGGTCATGTCAAAAGAG gtaggtagagatcttgttaactcacATAAATGTATTTTCTGTCCCTTTAGTTATAAAGAAAAAAAGGGGGAGGGAAGATGAGCCTTACAATATCTCGGAGGTCATGTCTAAGGATgtatatagtttttgtaatagattgaagtgctttttgaggaactacaacaa Alignment from GeneWise TCATGAAAAAGAAAAGAGGAAGAGAAGATGAATCTTATAATATTTCAGAGGTCATGTCAAAAGAG gtaggtagagatcttgttaactcacataaatgtattttctgtccctttagTTATAAAGAAAAAAAGGGGGAGGGAAGATGAGCCTTACAATATCTCGGAGGTCATGTCTAAGGATgtatatagtttttgtaatagattgaagtgctttttgaggaactacaacaa #### Hells_ID7700_7 --> 0 - 0 Original Alignment GATGAAAGCTCTTCCACTACGAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCTCAAACTGTTAGGCAGAATTCTAAATTCTTTTTTGACCCAGTTCGGAAATGTAACGGACAGCCTGTACCCTTTCAACAACCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCTTAGG attaatgaagggccattatgctgtgtctatgatttcttttccctctgtagGATGAAAGCTCTTCGACTACAGGTCTTTGTGTAGAAGATATTCAGAAAAACAAGGATTCAAATAGTATGATTAAAGATAGATTGTCCCAAACTGTGAGGCAAAATTCTAAGTTTTATTTTGACCCAGTTCGGAAATGTAATGGACAGCCAGTGCCCCTACAACAACCGAAGCATTTTACAGGGGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCCCAGGgtaaagagtcttcttctcttctcctcctgagctacagtcatcttgtcaag Alignment from CESAR GATGAAAGCTCTTCCACTACGAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCTCAAACTGTTAGGCAGAATTCTAAATTCTTTTTTGACCCAGTTCGGAAATGTAACGGACAGCCTGTACCCTTTCAACAACCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCTTAGG attaatgaagggccattatgctgtgtctatgatttcttttccctctgtagGATGAAAGCTCTTCGACTACAGGTCTTTGTGTAGAAGATATTCAGAAAAACAAGGATTCAAATAGTATGATTAAAGATAGATTGTCCCAAACTGTGAGGCAAAATTCTAAGTTTTATTTTGACCCAGTTCGGAAATGTAATGGACAGCCAGTGCCCCTACAACAACCGAAGCATTTTACAGGGGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCCCAGGgtaaagagtcttcttctcttctcctcctgagctacagtcatcttgtcaag Alignment from Spaln_aa2Genome GATGAAAGCTCTTCCACTACGAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCTCAAACTGTTAGGCAGAATTCTAAATTCTTTTTTGACCCAGTTCGGAAATGTAACGGACAGCCTGTACCCTTTCAACAACCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCTTAGG attaatgaagggccattatgctgtgtctatgatttcttttccctctgtagGATGAAAGCTCTTCGACTACAGGTCTTTGTGTAGAAGATATTCAGAAAAACAAGGATTCAAATAGTATGATTAAAGATAGATTGTCCCAAACTGTGAGGCAAAATTCTAAGTTTTATTTTGACCCAGTTCGGAAATGTAATGGACAGCCAGTGCCCCTACAACAACCGAAGCATTTTACAGGGGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCCCAGGgtaaagagtcttcttctcttctcctcctgagctacagtcatcttgtcaag Alignment from Spaln_nt2Genome GATGAAAGCTCTTCCACTACGAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCTCAAACTGTTAGGCAGAATTCTAAATTCTTTTTTGACCCAGTTCGGAAATGTAACGGACAGCCTGTACCCTTTCAACAACCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCTTAGG attaatgaagggccattatgctgtgtctatgatttcttttccctctgtagGATGAAAGCTCTTCGACTACAGGTCTTTGTGTAGAAGATATTCAGAAAAACAAGGATTCAAATAGTATGATTAAAGATAGATTGTCCCAAACTGTGAGGCAAAATTCTAAGTTTTATTTTGACCCAGTTCGGAAATGTAATGGACAGCCAGTGCCCCTACAACAACCGAAGCATTTTACAGGGGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCCCAGGgtaaagagtcttcttctcttctcctcctgagctacagtcatcttgtcaag Alignment from Pairagon GATGAAAGCTCTTCCACTACGAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCTCAAACTGTTAGGCAGAATTCTAAATTCTTTTTTGACCCAGTTCGGAAATGTAACGGACAGCCTGTACCCTTTCAACAACCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCTTAGG attaatgaagggccattatgctgtgtctatgatttcttttccctctgtagGATGAAAGCTCTTCGACTACAGGTCTTTGTGTAGAAGATATTCAGAAAAACAAGGATTCAAATAGTATGATTAAAGATAGATTGTCCCAAACTGTGAGGCAAAATTCTAAGTTTTATTTTGACCCAGTTCGGAAATGTAATGGACAGCCAGTGCCCCTACAACAACCGAAGCATTTTACAGGGGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCCCAGGgtaaagagtcttcttctcttctcctcctgagctacagtcatcttgtcaag Alignment from Exonerate_protein2genome GATGAAAGCTCTTCCACTACGAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCTCAAACTGTTAGGCAGAATTCTAAATTCTTTTTTGACCCAGTTCGGAAATGTAACGGACAGCCTGTACCCTTTCAACAACCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCTTAGG attaatgaagggccattatgctgtgtctatgatttcttttccctctgtagGATGAAAGCTCTTCGACTACAGGTCTTTGTGTAGAAGATATTCAGAAAAACAAGGATTCAAATAGTATGATTAAAGATAGATTGTCCCAAACTGTGAGGCAAAATTCTAAGTTTTATTTTGACCCAGTTCGGAAATGTAATGGACAGCCAGTGCCCCTACAACAACCGAAGCATTTTACAGGGGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCCCAGGgtaaagagtcttcttctcttctcctcctgagctacagtcatcttgtcaag Alignment from Exonerate_coding2genome GATGAAAGCTCTTCCACTACGAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCTCAAACTGTTAGGCAGAATTCTAAATTCTTTTTTGACCCAGTTCGGAAATGTAACGGACAGCCTGTACCCTTTCAACAACCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCTTAGG attaatgaagggccattatgctgtgtctatgatttcttttccctctgtagGATGAAAGCTCTTCGACTACAGGTCTTTGTGTAGAAGATATTCAGAAAAACAAGGATTCAAATAGTATGATTAAAGATAGATTGTCCCAAACTGTGAGGCAAAATTCTAAGTTTTATTTTGACCCAGTTCGGAAATGTAATGGACAGCCAGTGCCCCTACAACAACCGAAGCATTTTACAGGGGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCCCAGGgtaaagagtcttcttctcttctcctcctgagctacagtcatcttgtcaag Alignment from GeneWise GATGAAAGCTCTTCCACTACGAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCTCAAACTGTTAGGCAGAATTCTAAATTCTTTTTTGACCCAGTTCGGAAATGTAACGGACAGCCTGTACCCTTTCAACAACCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCTTAGG attaatgaagggccattatgctgtgtctatgatttcttttccctctgtagGATGAAAGCTCTTCGACTACAGGTCTTTGTGTAGAAGATATTCAGAAAAACAAGGATTCAAATAGTATGATTAAAGATAGATTGTCCCAAACTGTGAGGCAAAATTCTAAGTTTTATTTTGACCCAGTTCGGAAATGTAATGGACAGCCAGTGCCCCTACAACAACCGAAGCATTTTACAGGGGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCCCAGGgtaaagagtcttcttctcttctcctcctgagctacagtcatcttgtcaag #### Hells_ID7704_11 --> 1 - 0 Original Alignment cTTTGAGTCTTGGTTTGATATCACTAGTCTTTCTGAAACTGCTGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTACATATGCTGCACCAG tccaaatttggttcaccaccagagctctattgttttatccttcctcccagcTTTGAGTCTTGGTTTGATATCACTAGTCTTTCAGAAACTGCTGAAGACATCATAGCCACAGAGAGAGAACAGAATGTTTTATATATGCTTCACCAGgtaggatgatgcttctccaattctctgtgtctcatcccagcactcattgt Alignment from CESAR cTTTGAGTCTTGGTTTGATATCACTAGTCTTTCTGAAACTGCTGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTACATATGCTGCACCAG tccaaatttggttcaccaccagagctctattgttttatccttcctcccagcTTTGAGTCTTGGTTTGATATCACTAGTCTTTCAGAAACTGCTGAAGACATCATAGCCACAGAGAGAGAACAGAATGTTTTATATATGCTTCACCAGgtaggatgatgcttctccaattctctgtgtctcatcccagcactcattgt Alignment from Spaln_aa2Genome CTTTGAGTCTTGGTTTGATATCACTAGTCTTTCTGAAACTGCTGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTACATATGCTGCACCAG tccaaatttggttcaccaccagagctctattgttttatccttcctcccagCTTTGAGTCTTGGTTTGATATCACTAGTCTTTCAGAAACTGCTGAAGACATCATAGCCACAGAGAGAGAACAGAATGTTTTATATATGCTTCACCAGgtaggatgatgcttctccaattctctgtgtctcatcccagcactcattgt Alignment from Spaln_nt2Genome CTTTGAGTCTTGGTTTGATATCACTAGTCTTTCTGAAACTGCTGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTACATATGCTGCACCAG tccaaatttggttcaccaccagagctctattgttttatccttcctcccagCTTTGAGTCTTGGTTTGATATCACTAGTCTTTCAGAAACTGCTGAAGACATCATAGCCACAGAGAGAGAACAGAATGTTTTATATATGCTTCACCAGgtaggatgatgcttctccaattctctgtgtctcatcccagcactcattgt Alignment from Pairagon CTTTGAGTCTTGGTTTGATATCACTAGTCTTTCTGAAACTGCTGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTACATATGCTGCACCAG tccaaatttggttcaccaccagagctctattgttttatccttcctcccagCTTTGAGTCTTGGTTTGATATCACTAGTCTTTCAGAAACTGCTGAAGACATCATAGCCACAGAGAGAGAACAGAATGTTTTATATATGCTTCACCAGgtaggatgatgcttctccaattctctgtgtctcatcccagcactcattgt Alignment from Exonerate_protein2genome CTTTGAGTCTTGGTTTGATATCACTAGTCTTTCTGAAACTGCTGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTACATATGCTGCACCAG tccaaatttggttcaccaccagagctctattgttttatccttcctcccagCTTTGAGTCTTGGTTTGATATCACTAGTCTTTCAGAAACTGCTGAAGACATCATAGCCACAGAGAGAGAACAGAATGTTTTATATATGCTTCACCAGgtaggatgatgcttctccaattctctgtgtctcatcccagcactcattgt Alignment from Exonerate_coding2genome CTTTGAGTCTTGGTTTGATATCACTAGTCTTTCTGAAACTGCTGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTACATATGCTGCACCAG tccaaatttggttcaccaccagagctctattgttttatccttcctcccagCTTTGAGTCTTGGTTTGATATCACTAGTCTTTCAGAAACTGCTGAAGACATCATAGCCACAGAGAGAGAACAGAATGTTTTATATATGCTTCACCAGgtaggatgatgcttctccaattctctgtgtctcatcccagcactcattgt Alignment from GeneWise CTTTGAGTCTTGGTTTGATATCACTAGTCTTTCTGAAACTGCTGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTACATATGCTGCACCAG tccaaatttggttcaccaccagagctctattgttttatccttcctcccagCTTTGAGTCTTGGTTTGATATCACTAGTCTTTCAGAAACTGCTGAAGACATCATAGCCACAGAGAGAGAACAGAATGTTTTATATATGCTTCACCAGgtaggatgatgcttctccaattctctgtgtctcatcccagcactcattgt #### Hells_ID7709_16 --> 0 - 0 Original Alignment GTTCTGGTGTTTTCACAAATGACAAGCATGTTGGACATCTTGATGGATTATTGCCATCTTAGAAACTTCATCTTTAGCAGACTTGATGGGTCCATGTCTTATTCGGAAAGAGAAAAAAAT ctgtccagtgcaatatggatcagtctagccccacacggattttcccacagTTTCTAGTGTTCTCACAAATGACCAGCATGTTGGACATCCTGATGGATTATTGTCATCTTAGAAACTTCATATTTAGCAGACTAGATGGGTCAATGACTTATTCAGAAAGAGAAAAGAATgtaagcaagacttggcaaatattactgtatacagccatgacacctgtata Alignment from CESAR GTTCTGGTGTTTTCACAAATGACAAGCATGTTGGACATCTTGATGGATTATTGCCATCTTAGAAACTTCATCTTTAGCAGACTTGATGGGTCCATGTCTTATTCGGAAAGAGAAAAAAAT ctgtccagtgcaatatggatcagtctagccccacacggattttcccacagTTTCTAGTGTTCTCACAAATGACCAGCATGTTGGACATCCTGATGGATTATTGTCATCTTAGAAACTTCATATTTAGCAGACTAGATGGGTCAATGACTTATTCAGAAAGAGAAAAGAATgtaagcaagacttggcaaatattactgtatacagccatgacacctgtata Alignment from Spaln_aa2Genome GTTCTGGTGTTTTCACAAATGACAAGCATGTTGGACATCTTGATGGATTATTGCCATCTTAGAAACTTCATCTTTAGCAGACTTGATGGGTCCATGTCTTATTCGGAAAGAGAAAAAAAT ctgtccagtgcaatatggatcagtctagccccacacggattttcccacagTTTCTAGTGTTCTCACAAATGACCAGCATGTTGGACATCCTGATGGATTATTGTCATCTTAGAAACTTCATATTTAGCAGACTAGATGGGTCAATGACTTATTCAGAAAGAGAAAAGAATgtaagcaagacttggcaaatattactgtatacagccatgacacctgtata Alignment from Spaln_nt2Genome GTTCTGGTGTTTTCACAAATGACAAGCATGTTGGACATCTTGATGGATTATTGCCATCTTAGAAACTTCATCTTTAGCAGACTTGATGGGTCCATGTCTTATTCGGAAAGAGAAAAAAAT ctgtccagtgcaatatggatcagtctagccccacacggattttcccacagTTTCTAGTGTTCTCACAAATGACCAGCATGTTGGACATCCTGATGGATTATTGTCATCTTAGAAACTTCATATTTAGCAGACTAGATGGGTCAATGACTTATTCAGAAAGAGAAAAGAATgtaagcaagacttggcaaatattactgtatacagccatgacacctgtata Alignment from Pairagon ---------------------------------------------------TTCTGGTGTTTTCACAAATGACAAGCATGTTGGACATCTTGATGGATTATTGCCATCTTAGAAACTTCATCTTTAGCAGACTTGATGGGTCCATGTCTTATTCGGAAAGAGAAAAAAAT CTGTCCAGTGCAATATGGATCAGTCTAGCCCCACACGGATTTTCCCACAGTTTCTAGTGTTCTCACAAATGACCAGCATGTTGGACATCCTGATGGATTATTGTCATCTTAGAAACTTCATATTTAGCAGACTAGATGGGTCAATGACTTATTCAGAAAGAGAAAAGAATgtaagcaagacttggcaaatattactgtatacagccatgacacctgtata Alignment from Exonerate_protein2genome GTTCTGGTGTTTTCACAAATGACAAGCATGTTGGACATCTTGATGGATTATTGCCATCTTAGAAACTTCATCTTTAGCAGACTTGATGGGTCCATGTCTTATTCGGAAAGAGAAAAAAAT ctgtccagtgcaatatggatcagtctagccccacacggattttcccacagTTTCTAGTGTTCTCACAAATGACCAGCATGTTGGACATCCTGATGGATTATTGTCATCTTAGAAACTTCATATTTAGCAGACTAGATGGGTCAATGACTTATTCAGAAAGAGAAAAGAATgtaagcaagacttggcaaatattactgtatacagccatgacacctgtata Alignment from Exonerate_coding2genome GTTCTGGTGTTTTCACAAATGACAAGCATGTTGGACATCTTGATGGATTATTGCCATCTTAGAAACTTCATCTTTAGCAGACTTGATGGGTCCATGTCTTATTCGGAAAGAGAAAAAAAT ctgtccagtgcaatatggatcagtctagccccacacggattttcccacagTTTCTAGTGTTCTCACAAATGACCAGCATGTTGGACATCCTGATGGATTATTGTCATCTTAGAAACTTCATATTTAGCAGACTAGATGGGTCAATGACTTATTCAGAAAGAGAAAAGAATgtaagcaagacttggcaaatattactgtatacagccatgacacctgtata Alignment from GeneWise -----------------------------------------------------CTGGTGTTTTCACAAATGACAAGCATGTTGGACATCTTGATGGATTATTGCCATCTTAGAAACTTCATCTTTAGCAGACTTGATGGGTCCATGTCTTATTCGGAAAGAGAAAAAAAT CTGTCCAGTGCAATATGGATCAGTCTAGCCCCACACGGATTTTCCCACAGTTTCTAGTGTTCTCACAAATGACCAGCATGTTGGACATCCTGATGGATTATTGTCATCTTAGAAACTTCATATTTAGCAGACTAGATGGGTCAATGACTTATTCAGAAAGAGAAAAGAATgtaagcaagacttggcaaatattactgtatacagccatgacacctgtata #### Hells_ID7710_17 --> 0 - 0 Original Alignment ATATACAGTTTCAACACGGATCCAGATGTTTTTCTTTTCTTAGTGAGTACACGAGCTGGTGGTTTAGGCATAAACTTGACTGCAGCAGATACAGTGATCATTTATGACAGTGATTGG actcacttatttggtgtgccaccacacttgccagctctcttactgctcagATATACAGGTTCAACTTGGAGCCAGATCTCTTTCTTTTCCTAGTCAGTACTCGAGCAGGTGGTTTAGGCATAAATTTGATGTCCACAGATACA---ATCATTCATGACAGTGATTGGgtgaggactacaaaattattctgattctacaactcagaatactacatgac Alignment from CESAR ATATACAGTTTCAACACGGATCCAGATGTTTTTCTTTTCTTAGTGAGTACACGAGCTGGTGGTTTAGGCATAAACTTGACTGCAGCAGATACAGTGATCATTTATGACAGTGATTGG actcacttatttggtgtgccaccacacttgccagctctcttactgctcagATATACAGGTTCAACTTGGAGCCAGATCTCTTTCTTTTCCTAGTCAGTACTCGAGCAGGTGGTTTAGGCATAAATTTGATGTCCACAGATACA---ATCATTCATGACAGTGATTGGgtgaggactacaaaattattctgattctacaactcagaatactacatgac Alignment from Spaln_aa2Genome ATATACAGTTTCAACACGGATCCAGATGTTTTTCTTTTCTTAGTGAGTACACGAGCTGGTGGTTTAGGCATAAACTTGACTGCAGCAGATACAGTGATCATTTATGACAGTGATTGG actcacttatttggtgtgccaccacacttgccagctctcttactgctcagATATACAGGTTCAACTTGGAGCCAGATCTCTTTCTTTTCCTAGTCAGTACTCGAGCAGGTGGTTTAGGCATAAATTTGATGTCCACAGATACA---ATCATTCATGACAGTGATTGGgtgaggactacaaaattattctgattctacaactcagaatactacatgac Alignment from Spaln_nt2Genome ATATACAGTTTCAACACGGATCCAGATGTTTTTCTTTTCTTAGTGAGTACACGAGCTGGTGGTTTAGGCATAAACTTGACTGCAGCAGATACAGTGATCATTTATGACAGTGATTGG actcacttatttggtgtgccaccacacttgccagctctcttactgctcagATATACAGGTTCAACTTGGAGCCAGATCTCTTTCTTTTCCTAGTCAGTACTCGAGCAGGTGGTTTAGGCATAAATTTGATGTCCACAGATACA---ATCATTCATGACAGTGATTGGgtgaggactacaaaattattctgattctacaactcagaatactacatgac Alignment from Pairagon ATATACAGTTTCAACACGGATCCAGATGTTTTTCTTTTCTTAGTGAGTACACGAGCTGGTGGTTTAGGCATAAACTTGACTGCAGCAGATACAGTGATCATTTATGACAGTGATTGG actcacttatttggtgtgccaccacacttgccagctctcttactgctcagATATACAGGTTCAACTTGGAGCCAGATCTCTTTCTTTTCCTAGTCAGTACTCGAGCAGGTGGTTTAGGCATAAATTTGATGTCCACAGATACA---ATCATTCATGACAGTGATTGGgtgaggactacaaaattattctgattctacaactcagaatactacatgac Alignment from Exonerate_protein2genome ATATACAGTTTCAACACGGATCCAGATGTTTTTCTTTTCTTAGTGAGTACACGAGCTGGTGGTTTAGGCATAAACTTGACTGCAGCAGATACAGTGATCATTTATGACAGTGATTGG actcacttatttggtgtgccaccacacttgccagctctcttactgctcagATATACAGGTTCAACTTGGAGCCAGATCTCTTTCTTTTCCTAGTCAGTACTCGAGCAGGTGGTTTAGGCATAAATTTGATGTCCACAGATACA---ATCATTCATGACAGTGATTGGgtgaggactacaaaattattctgattctacaactcagaatactacatgac Alignment from Exonerate_coding2genome ATATACAGTTTCAACACGGATCCAGATGTTTTTCTTTTCTTAGTGAGTACACGAGCTGGTGGTTTAGGCATAAACTTGACTGCAGCAGATACAGTGATCATTTATGACAGTGATTGG actcacttatttggtgtgccaccacacttgccagctctcttactgctcagATATACAGGTTCAACTTGGAGCCAGATCTCTTTCTTTTCCTAGTCAGTACTCGAGCAGGTGGTTTAGGCATAAATTTGATGTCCACAGATACA---ATCATTCATGACAGTGATTGGgtgaggactacaaaattattctgattctacaactcagaatactacatgac Alignment from GeneWise ATATACAGTTTCAACACGGATCCAGATGTTTTTCTTTTCTTAGTGAGTACACGAGCTGGTGGTTTAGGCATAAACTTGACTGCAGCAGATACAGTGATCATTTATGACAGTGATTGG actcacttatttggtgtgccaccacacttgccagctctcttactgctcagATATACAGGTTCAACTTGGAGCCAGATCTCTTTCTTTTCCTAGTCAGTACTCGAGCAGGTGGTTTAGGCATAAATTTGATGTCCACAGATACA---ATCATTCATGACAGTGATTGGgtgaggactacaaaattattctgattctacaactcagaatactacatgac #### Hells_ID7711_18 --> 0 - 1 Original Alignment AATCCTCAGTCTGATCTCCAGGCTCAAGATAGATGTCATAGAATTGGTCAGACAAAGCCAGTTGTTGTGTATCGTCTTGTAACAGCAAATACTATTGACCAGAAAATTGTGGAAAGAGCAGCTGCTAAAAGAAAGTTGGAGAAGTTGATAATCCATAAAa gcttttttaacataacaatactattggattttttttcttttttgtttcagAATCCTCAGTCTGATCTCCAGGCTCAAGATAAATGTCATAGAATCGGTCAAACAAAGCCAGTTGCTGTGTATCGTCTTGTACCAGCAAACACTATTGAGCAGAAAATTGTGGAAAGGGCAGCTGCTAAAAGAAAGTTGGAAAAGTTGATAATCCATAAAagtaagcaagggctgatttgaccttaaatggtagtaaccaggcatctgttc Alignment from CESAR AATCCTCAGTCTGATCTCCAGGCTCAAGATAGATGTCATAGAATTGGTCAGACAAAGCCAGTTGTTGTGTATCGTCTTGTAACAGCAAATACTATTGACCAGAAAATTGTGGAAAGAGCAGCTGCTAAAAGAAAGTTGGAGAAGTTGATAATCCATAAAa gcttttttaacataacaatactattggattttttttcttttttgtttcagAATCCTCAGTCTGATCTCCAGGCTCAAGATAAATGTCATAGAATCGGTCAAACAAAGCCAGTTGCTGTGTATCGTCTTGTACCAGCAAACACTATTGAGCAGAAAATTGTGGAAAGGGCAGCTGCTAAAAGAAAGTTGGAAAAGTTGATAATCCATAAAagtaagcaagggctgatttgaccttaaatggtagtaaccaggcatctgttc Alignment from Spaln_aa2Genome AATCCTCAGTCTGATCTCCAGGCTCAAGATAGATGTCATAGAATTGGTCAGACAAAGCCAGTTGTTGTGTATCGTCTTGTAACAGCAAATACTATTGACCAGAAAATTGTGGAAAGAGCAGCTGCTAAAAGAAAGTTGGAGAAGTTGATAATCCATAAAA gcttttttaacataacaatactattggattttttttcttttttgtttcagAATCCTCAGTCTGATCTCCAGGCTCAAGATAAATGTCATAGAATCGGTCAAACAAAGCCAGTTGCTGTGTATCGTCTTGTACCAGCAAACACTATTGAGCAGAAAATTGTGGAAAGGGCAGCTGCTAAAAGAAAGTTGGAAAAGTTGATAATCCATAAAAgtaagcaagggctgatttgaccttaaatggtagtaaccaggcatctgttc Alignment from Spaln_nt2Genome AATCCTCAGTCTGATCTCCAGGCTCAAGATAGATGTCATAGAATTGGTCAGACAAAGCCAGTTGTTGTGTATCGTCTTGTAACAGCAAATACTATTGACCAGAAAATTGTGGAAAGAGCAGCTGCTAAAAGAAAGTTGGAGAAGTTGATAATCCATAAAA gcttttttaacataacaatactattggattttttttcttttttgtttcagAATCCTCAGTCTGATCTCCAGGCTCAAGATAAATGTCATAGAATCGGTCAAACAAAGCCAGTTGCTGTGTATCGTCTTGTACCAGCAAACACTATTGAGCAGAAAATTGTGGAAAGGGCAGCTGCTAAAAGAAAGTTGGAAAAGTTGATAATCCATAAAAgtaagcaagggctgatttgaccttaaatggtagtaaccaggcatctgttc Alignment from Pairagon AATCCTCAGTCTGATCTCCAGGCTCAAGATAGATGTCATAGAATTGGTCAGACAAAGCCAGTTGTTGTGTATCGTCTTGTAACAGCAAATACTATTGACCAGAAAATTGTGGAAAGAGCAGCTGCTAAAAGAAAGTTGGAGAAGTTGATAATCCATAAAA gcttttttaacataacaatactattggattttttttcttttttgtttcagAATCCTCAGTCTGATCTCCAGGCTCAAGATAAATGTCATAGAATCGGTCAAACAAAGCCAGTTGCTGTGTATCGTCTTGTACCAGCAAACACTATTGAGCAGAAAATTGTGGAAAGGGCAGCTGCTAAAAGAAAGTTGGAAAAGTTGATAATCCATAAAAgtaagcaagggctgatttgaccttaaatggtagtaaccaggcatctgttc Alignment from Exonerate_protein2genome AATCCTCAGTCTGATCTCCAGGCTCAAGATAGATGTCATAGAATTGGTCAGACAAAGCCAGTTGTTGTGTATCGTCTTGTAACAGCAAATACTATTGACCAGAAAATTGTGGAAAGAGCAGCTGCTAAAAGAAAGTTGGAGAAGTTGATAATCCATAAAA gcttttttaacataacaatactattggattttttttcttttttgtttcagAATCCTCAGTCTGATCTCCAGGCTCAAGATAAATGTCATAGAATCGGTCAAACAAAGCCAGTTGCTGTGTATCGTCTTGTACCAGCAAACACTATTGAGCAGAAAATTGTGGAAAGGGCAGCTGCTAAAAGAAAGTTGGAAAAGTTGATAATCCATAAAAgtaagcaagggctgatttgaccttaaatggtagtaaccaggcatctgttc Alignment from Exonerate_coding2genome AATCCTCAGTCTGATCTCCAGGCTCAAGATAGATGTCATAGAATTGGTCAGACAAAGCCAGTTGTTGTGTATCGTCTTGTAACAGCAAATACTATTGACCAGAAAATTGTGGAAAGAGCAGCTGCTAAAAGAAAGTTGGAGAAGTTGATAATCCATAAAA gcttttttaacataacaatactattggattttttttcttttttgtttcagAATCCTCAGTCTGATCTCCAGGCTCAAGATAAATGTCATAGAATCGGTCAAACAAAGCCAGTTGCTGTGTATCGTCTTGTACCAGCAAACACTATTGAGCAGAAAATTGTGGAAAGGGCAGCTGCTAAAAGAAAGTTGGAAAAGTTGATAATCCATAAAAgtaagcaagggctgatttgaccttaaatggtagtaaccaggcatctgttc Alignment from GeneWise AATCCTCAGTCTGATCTCCAGGCTCAAGATAGATGTCATAGAATTGGTCAGACAAAGCCAGTTGTTGTGTATCGTCTTGTAACAGCAAATACTATTGACCAGAAAATTGTGGAAAGAGCAGCTGCTAAAAGAAAGTTGGAGAAGTTGATAATCCATAAAA gcttttttaacataacaatactattggattttttttcttttttgtttcagAATCCTCAGTCTGATCTCCAGGCTCAAGATAAATGTCATAGAATCGGTCAAACAAAGCCAGTTGCTGTGTATCGTCTTGTACCAGCAAACACTATTGAGCAGAAAATTGTGGAAAGGGCAGCTGCTAAAAGAAAGTTGGAAAAGTTGATAATCCATAAAAgtaagcaagggctgatttgaccttaaatggtagtaaccaggcatctgttc #### Hif1an_ID9064_2 --> 0 - 2 Original Alignment GAGCCAGTGGTGCTGACCGACACAAACCTTGTGTATCCTGCACTGAAGTGGGACCTCGAATACCTGCAAGAGAATATTGGCAACGGAGATTTCTCTGTGTACAGTGCCAGCACCCATAAGTTCTTATACTATGATGAGAAGAAGATGGGCAATTTCCAGAACTTTAAGCCAAGGTCCAACAGGGAGGAAATTAAATTTCATGAGTTCGTTGAGAAACTACAAGCTATACAGCAGCGCGGGGGAGAAGAGcg cctctcattgttattcctacaaggcctttgctgtttgtttttacgtccagGAGCCAGTGGTGCTGACTGACACAAACCTTGTGTATCCTGCATTGAAGTGGGATCTTGACTATCTGCAAGAGAATCTTGGCAACAGAGGTTTCTCTGTGTCTAGTGCCAGTACCCATAAGTCCTTATACTATGATGAGAAGAAGATGGGCAATTTCCAGAATTTTAAACCAAGGTCCAACAGGGAGGAAATTAAATTTCATGAGTTTGTAGTGAAACTACAAGCTATACAGCAGCGCGGAGGAGAAGATcggtaagctactgctatgtcagtctaaggggggaagcctttataaacaggat Alignment from CESAR GAGCCAGTGGTGCTGACCGACACAAACCTTGTGTATCCTGCACTGAAGTGGGACCTCGAATACCTGCAAGAGAATATTGGCAACGGAGATTTCTCTGTGTACAGTGCCAGCACCCATAAGTTCTTATACTATGATGAGAAGAAGATGGGCAATTTCCAGAACTTTAAGCCAAGGTCCAACAGGGAGGAAATTAAATTTCATGAGTTCGTTGAGAAACTACAAGCTATACAGCAGCGCGGGGGAGAAGAGcg cctctcattgttattcctacaaggcctttgctgtttgtttttacgtccagGAGCCAGTGGTGCTGACTGACACAAACCTTGTGTATCCTGCATTGAAGTGGGATCTTGACTATCTGCAAGAGAATCTTGGCAACAGAGGTTTCTCTGTGTCTAGTGCCAGTACCCATAAGTCCTTATACTATGATGAGAAGAAGATGGGCAATTTCCAGAATTTTAAACCAAGGTCCAACAGGGAGGAAATTAAATTTCATGAGTTTGTAGTGAAACTACAAGCTATACAGCAGCGCGGAGGAGAAGATcggtaagctactgctatgtcagtctaaggggggaagcctttataaacaggat Alignment from Spaln_aa2Genome GAGCCAGTGGTGCTGACCGACACAAACCTTGTGTATCCTGCACTGAAGTGGGACCTCGAATACCTGCAAGAGAATATTGGCAACGGAGATTTCTCTGTGTACAGTGCCAGCACCCATAAGTTCTTATACTATGATGAGAAGAAGATGGGCAATTTCCAGAACTTTAAGCCAAGGTCCAACAGGGAGGAAATTAAATTTCATGAGTTCGTTGAGAAACTACAAGCTATACAGCAGCGCGGGGGAGAAGAGCG cctctcattgttattcctacaaggcctttgctgtttgtttttacgtccagGAGCCAGTGGTGCTGACTGACACAAACCTTGTGTATCCTGCATTGAAGTGGGATCTTGACTATCTGCAAGAGAATCTTGGCAACAGAGGTTTCTCTGTGTCTAGTGCCAGTACCCATAAGTCCTTATACTATGATGAGAAGAAGATGGGCAATTTCCAGAATTTTAAACCAAGGTCCAACAGGGAGGAAATTAAATTTCATGAGTTTGTAGTGAAACTACAAGCTATACAGCAGCGCGGAGGAGAAGATCGgtaagctactgctatgtcagtctaaggggggaagcctttataaacaggat Alignment from Spaln_nt2Genome GAGCCAGTGGTGCTGACCGACACAAACCTTGTGTATCCTGCACTGAAGTGGGACCTCGAATACCTGCAAGAGAATATTGGCAACGGAGATTTCTCTGTGTACAGTGCCAGCACCCATAAGTTCTTATACTATGATGAGAAGAAGATGGGCAATTTCCAGAACTTTAAGCCAAGGTCCAACAGGGAGGAAATTAAATTTCATGAGTTCGTTGAGAAACTACAAGCTATACAGCAGCGCGGGGGAGAAGAGCG cctctcattgttattcctacaaggcctttgctgtttgtttttacgtccagGAGCCAGTGGTGCTGACTGACACAAACCTTGTGTATCCTGCATTGAAGTGGGATCTTGACTATCTGCAAGAGAATCTTGGCAACAGAGGTTTCTCTGTGTCTAGTGCCAGTACCCATAAGTCCTTATACTATGATGAGAAGAAGATGGGCAATTTCCAGAATTTTAAACCAAGGTCCAACAGGGAGGAAATTAAATTTCATGAGTTTGTAGTGAAACTACAAGCTATACAGCAGCGCGGAGGAGAAGATCGgtaagctactgctatgtcagtctaaggggggaagcctttataaacaggat Alignment from Pairagon GAGCCAGTGGTGCTGACCGACACAAACCTTGTGTATCCTGCACTGAAGTGGGACCTCGAATACCTGCAAGAGAATATTGGCAACGGAGATTTCTCTGTGTACAGTGCCAGCACCCATAAGTTCTTATACTATGATGAGAAGAAGATGGGCAATTTCCAGAACTTTAAGCCAAGGTCCAACAGGGAGGAAATTAAATTTCATGAGTTCGTTGAGAAACTACAAGCTATACAGCAGCGCGGGGGAGAAGAGCG cctctcattgttattcctacaaggcctttgctgtttgtttttacgtccagGAGCCAGTGGTGCTGACTGACACAAACCTTGTGTATCCTGCATTGAAGTGGGATCTTGACTATCTGCAAGAGAATCTTGGCAACAGAGGTTTCTCTGTGTCTAGTGCCAGTACCCATAAGTCCTTATACTATGATGAGAAGAAGATGGGCAATTTCCAGAATTTTAAACCAAGGTCCAACAGGGAGGAAATTAAATTTCATGAGTTTGTAGTGAAACTACAAGCTATACAGCAGCGCGGAGGAGAAGATCGgtaagctactgctatgtcagtctaaggggggaagcctttataaacaggat Alignment from Exonerate_protein2genome GAGCCAGTGGTGCTGACCGACACAAACCTTGTGTATCCTGCACTGAAGTGGGACCTCGAATACCTGCAAGAGAATATTGGCAACGGAGATTTCTCTGTGTACAGTGCCAGCACCCATAAGTTCTTATACTATGATGAGAAGAAGATGGGCAATTTCCAGAACTTTAAGCCAAGGTCCAACAGGGAGGAAATTAAATTTCATGAGTTCGTTGAGAAACTACAAGCTATACAGCAGCGCGGGGGAGAAGAGCG cctctcattgttattcctacaaggcctttgctgtttgtttttacgtccagGAGCCAGTGGTGCTGACTGACACAAACCTTGTGTATCCTGCATTGAAGTGGGATCTTGACTATCTGCAAGAGAATCTTGGCAACAGAGGTTTCTCTGTGTCTAGTGCCAGTACCCATAAGTCCTTATACTATGATGAGAAGAAGATGGGCAATTTCCAGAATTTTAAACCAAGGTCCAACAGGGAGGAAATTAAATTTCATGAGTTTGTAGTGAAACTACAAGCTATACAGCAGCGCGGAGGAGAAGATCGgtaagctactgctatgtcagtctaaggggggaagcctttataaacaggat Alignment from Exonerate_coding2genome GAGGAGCCAGTGGTGCTGACCGACACAAACCTTGTGTATCCTGCACTGAAGTGGGACCTCGAATACCTGCAAGAGAATATTGGCAACGGAGATTTCTCTGTGTACAGTGCCAGCACCCATAAGTTCTTATACTATGATGAGAAGAAGATGGGCAATTTCCAGAACTTTAAGCCAAGGTCCAACAGGGAGGAAATTAAATTTCATGAGTTCGTTGAGAAACTACAAGCTATACAGCAGCGCGGGGGAGAAGAGCG cctctcattgttattcctacaaggcctttgctgtttgtttttacgtcCAGGAGCCAGTGGTGCTGACTGACACAAACCTTGTGTATCCTGCATTGAAGTGGGATCTTGACTATCTGCAAGAGAATCTTGGCAACAGAGGTTTCTCTGTGTCTAGTGCCAGTACCCATAAGTCCTTATACTATGATGAGAAGAAGATGGGCAATTTCCAGAATTTTAAACCAAGGTCCAACAGGGAGGAAATTAAATTTCATGAGTTTGTAGTGAAACTACAAGCTATACAGCAGCGCGGAGGAGAAGATCGgtaagctactgctatgtcagtctaaggggggaagcctttataaacaggat Alignment from GeneWise GAGCCAGTGGTGCTGACCGACACAAACCTTGTGTATCCTGCACTGAAGTGGGACCTCGAATACCTGCAAGAGAATATTGGCAACGGAGATTTCTCTGTGTACAGTGCCAGCACCCATAAGTTCTTATACTATGATGAGAAGAAGATGGGCAATTTCCAGAACTTTAAGCCAAGGTCCAACAGGGAGGAAATTAAATTTCATGAGTTCGTTGAGAAACTACAAGCTATACAGCAGCGCGGGGGAGAAGAGCG cctctcattgttattcctacaaggcctttgctgtttgtttttacgtccagGAGCCAGTGGTGCTGACTGACACAAACCTTGTGTATCCTGCATTGAAGTGGGATCTTGACTATCTGCAAGAGAATCTTGGCAACAGAGGTTTCTCTGTGTCTAGTGCCAGTACCCATAAGTCCTTATACTATGATGAGAAGAAGATGGGCAATTTCCAGAATTTTAAACCAAGGTCCAACAGGGAGGAAATTAAATTTCATGAGTTTGTAGTGAAACTACAAGCTATACAGCAGCGCGGAGGAGAAGATCGgtaagctactgctatgtcagtctaaggggggaagcctttataaacaggat #### Hif1an_ID9066_4 --> 2 - 0 Original Alignment gaAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTTTTTGCCCAAATAAAAGGCCATAAGAGATGCATCTTATTTCCTCCGGATCAGTTCGAGTGCCTCTATCCATACCCTGTCCATCACCCCTGTGACAGGCAGAGCCAG atgcagtctatatatggggaccagtatgccccccccccccccccccccaggcAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTCTTTGCCCAAATAAAGGGTCATGAAAGATGTATTTTATTCCCCCCTGATCAATTTGAGTGCCTATATCCATTCCCTGTACAGCACCCCTGCGACTGGCAGAGCCAGgtgcgtttcaagggtgatctataatgctgtgccatatctttcccagcccc Alignment from CESAR gaAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTTTTTGCCCAAATAAAAGGCCATAAGAGATGCATCTTATTTCCTCCGGATCAGTTCGAGTGCCTCTATCCATACCCTGTCCATCACCCCTGTGACAGGCAGAGCCAG atgcagtctatatatggggaccagtatgccccccccccccccccccccaggcAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTCTTTGCCCAAATAAAGGGTCATGAAAGATGTATTTTATTCCCCCCTGATCAATTTGAGTGCCTATATCCATTCCCTGTACAGCACCCCTGCGACTGGCAGAGCCAGgtgcgtttcaagggtgatctataatgctgtgccatatctttcccagcccc Alignment from Spaln_aa2Genome GAAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTTTTTGCCCAAATAAAAGGCCATAAGAGATGCATCTTATTTCCTCCGGATCAGTTCGAGTGCCTCTATCCATACCCTGTCCATCACCCCTGTGACAGGCAGAGCCAG atgcagtctatatatggggaccagtatgccccccccccccccccccccagGCAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTCTTTGCCCAAATAAAGGGTCATGAAAGATGTATTTTATTCCCCCCTGATCAATTTGAGTGCCTATATCCATTCCCTGTACAGCACCCCTGCGACTGGCAGAGCCAGgtgcgtttcaagggtgatctataatgctgtgccatatctttcccagcccc Alignment from Spaln_nt2Genome GAAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTTTTTGCCCAAATAAAAGGCCATAAGAGATGCATCTTATTTCCTCCGGATCAGTTCGAGTGCCTCTATCCATACCCTGTCCATCACCCCTGTGACAGGCAGAGCCAG atgcagtctatatatggggaccagtatgccccccccccccccccccccagGCAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTCTTTGCCCAAATAAAGGGTCATGAAAGATGTATTTTATTCCCCCCTGATCAATTTGAGTGCCTATATCCATTCCCTGTACAGCACCCCTGCGACTGGCAGAGCCAGgtgcgtttcaagggtgatctataatgctgtgccatatctttcccagcccc Alignment from Pairagon GAAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTTTTTGCCCAAATAAAAGGCCATAAGAGATGCATCTTATTTCCTCCGGATCAGTTCGAGTGCCTCTATCCATACCCTGTCCATCACCCCTGTGACAGGCAGAGCCAG atgcagtctatatatggggaccagtatgccccccccccccccccccccagGCAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTCTTTGCCCAAATAAAGGGTCATGAAAGATGTATTTTATTCCCCCCTGATCAATTTGAGTGCCTATATCCATTCCCTGTACAGCACCCCTGCGACTGGCAGAGCCAGgtgcgtttcaagggtgatctataatgctgtgccatatctttcccagcccc Alignment from Exonerate_protein2genome GAAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTTTTTGCCCAAATAAAAGGCCATAAGAGATGCATCTTATTTCCTCCGGATCAGTTCGAGTGCCTCTATCCATACCCTGTCCATCACCCCTGTGACAGGCAGAGCCAG atgcagtctatatatggggaccagtatgccccccccccccccccccccagGCAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTCTTTGCCCAAATAAAGGGTCATGAAAGATGTATTTTATTCCCCCCTGATCAATTTGAGTGCCTATATCCATTCCCTGTACAGCACCCCTGCGACTGGCAGAGCCAGgtgcgtttcaagggtgatctataatgctgtgccatatctttcccagcccc Alignment from Exonerate_coding2genome GAAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTTTTTGCCCAAATAAAAGGCCATAAGAGATGCATCTTATTTCCTCCGGATCAGTTCGAGTGCCTCTATCCATACCCTGTCCATCACCCCTGTGACAGGCAGAGCCAG atgcagtctatatatggggaccagtatgccccccccccccccccccccagGCAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTCTTTGCCCAAATAAAGGGTCATGAAAGATGTATTTTATTCCCCCCTGATCAATTTGAGTGCCTATATCCATTCCCTGTACAGCACCCCTGCGACTGGCAGAGCCAGgtgcgtttcaagggtgatctataatgctgtgccatatctttcccagcccc Alignment from GeneWise GAAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTTTTTGCCCAAATAAAAGGCCATAAGAGATGCATCTTATTTCCTCCGGATCAGTTCGAGTGCCTCTATCCATACCCTGTCCATCACCCCTGTGACAGGCAGAGCCAG atgcagtctatatatggggaccagtatgccccccccccccccccccccagGCAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTCTTTGCCCAAATAAAGGGTCATGAAAGATGTATTTTATTCCCCCCTGATCAATTTGAGTGCCTATATCCATTCCCTGTACAGCACCCCTGCGACTGGCAGAGCCAGgtgcgtttcaagggtgatctataatgctgtgccatatctttcccagcccc #### Hif1an_ID9067_5 --> 0 - 2 Original Alignment GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACtg cacttgtgtgaagtgacaacttgatagtcctgatcaccttttccctgcagGTGGACTTTGATAATCCAGACTATGAGAGGTTCCCCAATTTTCGTAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATCCCTATGTATtggtgaggtgcaaacgaataaagggcaggacaagaccaaaaggcagtgcttt Alignment from CESAR GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACtg cacttgtgtgaagtgacaacttgatagtcctgatcaccttttccctgcagGTGGACTTTGATAATCCAGACTATGAGAGGTTCCCCAATTTTCGTAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATCCCTATGTATtggtgaggtgcaaacgaataaagggcaggacaagaccaaaaggcagtgcttt Alignment from Spaln_aa2Genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG cacttgtgtgaagtgacaacttgatagtcctgatcaccttttccctgcagGTGGACTTTGATAATCCAGACTATGAGAGGTTCCCCAATTTTCGTAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATCCCTATGTATTGgtgaggtgcaaacgaataaagggcaggacaagaccaaaaggcagtgcttt Alignment from Spaln_nt2Genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG cacttgtgtgaagtgacaacttgatagtcctgatcaccttttccctgcagGTGGACTTTGATAATCCAGACTATGAGAGGTTCCCCAATTTTCGTAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATCCCTATGTATTGgtgaggtgcaaacgaataaagggcaggacaagaccaaaaggcagtgcttt Alignment from Pairagon GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG cacttgtgtgaagtgacaacttgatagtcctgatcaccttttccctgcagGTGGACTTTGATAATCCAGACTATGAGAGGTTCCCCAATTTTCGTAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATCCCTATGTATTGgtgaggtgcaaacgaataaagggcaggacaagaccaaaaggcagtgcttt Alignment from Exonerate_protein2genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG cacttgtgtgaagtgacaacttgatagtcctgatcaccttttccctgcagGTGGACTTTGATAATCCAGACTATGAGAGGTTCCCCAATTTTCGTAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATCCCTATGTATTGgtgaggtgcaaacgaataaagggcaggacaagaccaaaaggcagtgcttt Alignment from Exonerate_coding2genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG cacttgtgtgaagtgacaacttgatagtcctgatcaccttttccctgcagGTGGACTTTGATAATCCAGACTATGAGAGGTTCCCCAATTTTCGTAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATCCCTATGTATTGgtgaggtgcaaacgaataaagggcaggacaagaccaaaaggcagtgcttt Alignment from GeneWise GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG cacttgtgtgaagtgacaacttgatagtcctgatcaccttttccctgcagGTGGACTTTGATAATCCAGACTATGAGAGGTTCCCCAATTTTCGTAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATCCCTATGTATTGgtgaggtgcaaacgaataaagggcaggacaagaccaaaaggcagtgcttt #### Hnrnpul2_ID2397_2 --> 2 - 2 Original Alignment gaGATGACCAAGATAGTGAAAAGTCAAAACCAGCAGGCTCAGATGGTGAGCGGCGGGGGGTAAAGAGACAGCGGGATGAGAAGGATGAACATGGCCGAGCTTACTATGAATTCCGAGAGGAGGCTTACCACAGCcg ttgctttctgcacacactccacattgcatccgttcttgttccgcatctaggaGATGACCAAGATAGTGAAAAGTCAAGACCAGCAGGCTCAGATGGTGAGCGACGGGGGGTAAAGAGACAGCGGGATGAGAAGGATGAACATGGCCGAGCTTACTATGAATTCCGAGAGGAGGCCTACCACAGCtggtgagtaaacacctcttagtagggctctctaccccactttccatattcat Alignment from CESAR gaGATGACCAAGATAGTGAAAAGTCAAAACCAGCAGGCTCAGATGGTGAGCGGCGGGGGGTAAAGAGACAGCGGGATGAGAAGGATGAACATGGCCGAGCTTACTATGAATTCCGAGAGGAGGCTTACCACAGCcg ttgctttctgcacacactccacattgcatccgttcttgttccgcatctaggaGATGACCAAGATAGTGAAAAGTCAAGACCAGCAGGCTCAGATGGTGAGCGACGGGGGGTAAAGAGACAGCGGGATGAGAAGGATGAACATGGCCGAGCTTACTATGAATTCCGAGAGGAGGCCTACCACAGCtggtgagtaaacacctcttagtagggctctctaccccactttccatattcat Alignment from Spaln_aa2Genome GAGATGACCAAGATAGTGAAAAGTCAAAACCAGCAGGCTCAGATGGTGAGCGGCGGGGGGTAAAGAGACAGCGGGATGAGAAGGATGAACATGGCCGAGCTTACTATGAATTCCGAGAGGAGGCTTACCACAGCCG ttgctttctgcacacactccacattgcatccgttcttgttccgcatctagGAGATGACCAAGATAGTGAAAAGTCAAGACCAGCAGGCTCAGATGGTGAGCGACGGGGGGTAAAGAGACAGCGGGATGAGAAGGATGAACATGGCCGAGCTTACTATGAATTCCGAGAGGAGGCCTACCACAGCTGgtgagtaaacacctcttagtagggctctctaccccactttccatattcat Alignment from Spaln_nt2Genome GAGATGACCAAGATAGTGAAAAGTCAAAACCAGCAGGCTCAGATGGTGAGCGGCGGGGGGTAAAGAGACAGCGGGATGAGAAGGATGAACATGGCCGAGCTTACTATGAATTCCGAGAGGAGGCTTACCACAGCCG ttgctttctgcacacactccacattgcatccgttcttgttccgcatctagGAGATGACCAAGATAGTGAAAAGTCAAGACCAGCAGGCTCAGATGGTGAGCGACGGGGGGTAAAGAGACAGCGGGATGAGAAGGATGAACATGGCCGAGCTTACTATGAATTCCGAGAGGAGGCCTACCACAGCTGgtgagtaaacacctcttagtagggctctctaccccactttccatattcat Alignment from Pairagon GAGATGACCAAGATAGTGAAAAGTCAAAACCAGCAGGCTCAGATGGTGAGCGGCGGGGGGTAAAGAGACAGCGGGATGAGAAGGATGAACATGGCCGAGCTTACTATGAATTCCGAGAGGAGGCTTACCACAGCCG ttgctttctgcacacactccacattgcatccgttcttgttccgcatctagGAGATGACCAAGATAGTGAAAAGTCAAGACCAGCAGGCTCAGATGGTGAGCGACGGGGGGTAAAGAGACAGCGGGATGAGAAGGATGAACATGGCCGAGCTTACTATGAATTCCGAGAGGAGGCCTACCACAGCTGgtgagtaaacacctcttagtagggctctctaccccactttccatattcat Alignment from Exonerate_protein2genome GAGATGACCAAGATAGTGAAAAGTCAAAACCAGCAGGCTCAGATGGTGAGCGGCGGGGGGTAAAGAGACAGCGGGATGAGAAGGATGAACATGGCCGAGCTTACTATGAATTCCGAGAGGAGGCTTACCACAGCCG ttgctttctgcacacactccacattgcatccgttcttgttccgcatctagGAGATGACCAAGATAGTGAAAAGTCAAGACCAGCAGGCTCAGATGGTGAGCGACGGGGGGTAAAGAGACAGCGGGATGAGAAGGATGAACATGGCCGAGCTTACTATGAATTCCGAGAGGAGGCCTACCACAGCTGgtgagtaaacacctcttagtagggctctctaccccactttccatattcat Alignment from Exonerate_coding2genome GAGATGACCAAGATAGTGAAAAGTCAAAACCAGCAGGCTCAGATGGTGAGCGGCGGGGGGTAAAGAGACAGCGGGATGAGAAGGATGAACATGGCCGAGCTTACTATGAATTCCGAGAGGAGGCTTACCACAGCCG ttgctttctgcacacactccacattgcatccgttcttgttccgcatctagGAGATGACCAAGATAGTGAAAAGTCAAGACCAGCAGGCTCAGATGGTGAGCGACGGGGGGTAAAGAGACAGCGGGATGAGAAGGATGAACATGGCCGAGCTTACTATGAATTCCGAGAGGAGGCCTACCACAGCTGgtgagtaaacacctcttagtagggctctctaccccactttccatattcat Alignment from GeneWise GAGATGACCAAGATAGTGAAAAGTCAAAACCAGCAGGCTCAGATGGTGAGCGGCGGGGGGTAAAGAGACAGCGGGATGAGAAGGATGAACATGGCCGAGCTTACTATGAATTCCGAGAGGAGGCTTACCACAGCCG ttgctttctgcacacactccacattgcatccgttcttgttccgcatctagGAGATGACCAAGATAGTGAAAAGTCAAGACCAGCAGGCTCAGATGGTGAGCGACGGGGGGTAAAGAGACAGCGGGATGAGAAGGATGAACATGGCCGAGCTTACTATGAATTCCGAGAGGAGGCCTACCACAGCTGgtgagtaaacacctcttagtagggctctctaccccactttccatattcat #### Hnrnpul2_ID2399_3 --> 1 - 1 Original Alignment cTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGt aagttataaattataacatgtttggcaatataacgttgacttccaaacagcTCAAGGTCCCCCTCACCTCCAGAGGAAGAAGCTAAAGATGAGGAGGAGGCCCAGTCACTAGTGAACTTGGATACTtgtgaatggttgcatgttatggcttatctttagaaatatcgtattttcctc Alignment from CESAR cTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGt aagttataaattataacatgtttggcaatataacgttgacttccaaacagcTCAAGGTCCCCCTCACCTCCAGAGGAAGAAGCTAAAGATGAGGAGGAGGCCCAGTCACTAGTGAACTTGGATACTtgtgaatggttgcatgttatggcttatctttagaaatatcgtattttcctc Alignment from Spaln_aa2Genome CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT aagttataaattataacatgtttggcaatataacgttgacttccaaacagCTCAAGGTCCCCCTCACCTCCAGAGGAAGAAGCTAAAGATGAGGAGGAGGCCCAGTCACTAGTGAACTTGGATACTTgtgaatggttgcatgttatggcttatctttagaaatatcgtattttcctc Alignment from Spaln_nt2Genome CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT aagttataaattataacatgtttggcaatataacgttgacttccaaacagCTCAAGGTCCCCCTCACCTCCAGAGGAAGAAGCTAAAGATGAGGAGGAGGCCCAGTCACTAGTGAACTTGGATACTTgtgaatggttgcatgttatggcttatctttagaaatatcgtattttcctc Alignment from Pairagon CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT aagttataaattataacatgtttggcaatataacgttgacttccaaacagCTCAAGGTCCCCCTCACCTCCAGAGGAAGAAGCTAAAGATGAGGAGGAGGCCCAGTCACTAGTGAACTTGGATACTTgtgaatggttgcatgttatggcttatctttagaaatatcgtattttcctc Alignment from Exonerate_protein2genome CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT aagttataaattataacatgtttggcaatataacgttgacttccaaacagCTCAAGGTCCCCCTCACCTCCAGAGGAAGAAGCTAAAGATGAGGAGGAGGCCCAGTCACTAGTGAACTTGGATACTTgtgaatggttgcatgttatggcttatctttagaaatatcgtattttcctc Alignment from Exonerate_coding2genome CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT aagttataaattataacatgtttggcaatataacgttgacttccaaacagCTCAAGGTCCCCCTCACCTCCAGAGGAAGAAGCTAAAGATGAGGAGGAGGCCCAGTCACTAGTGAACTTGGATACTTgtgaatggttgcatgttatggcttatctttagaaatatcgtattttcctc Alignment from GeneWise CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT aagttataaattataacatgtttggcaatataacgttgacttccaaacagCTCAAGGTCCCCCTCACCTCCAGAGGAAGAAGCTAAAGATGAGGAGGAGGCCCAGTCACTAGTGAACTTGGATACTTgtgaatggttgcatgttatggcttatctttagaaatatcgtattttcctc #### Hnrnpul2_ID2401_5 --> 0 - 1 Original Alignment GTAACTCAGAATCTCCCAATGAAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTg ttacttctagactgtgtgaattggtctataattgcttttgtctttgatagGTTACACAAAATCTACCAATGCAAGAAGGCAGCACAGAAGTCTCTCTCCTTAGAGTAGAGTGGTCTGTAGACTTTTCCTGTTCGCAACTTggtcagatgccctgtatcattttttattgcgtctattgattcttctctctt Alignment from CESAR GTAACTCAGAATCTCCCAATGAAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTg ttacttctagactgtgtgaattggtctataattgcttttgtctttgatagGTTACACAAAATCTACCAATGCAAGAAGGCAGCACAGAAGTCTCTCTCCTTAGAGTAGAGTGGTCTGTAGACTTTTCCTGTTCGCAACTTggtcagatgccctgtatcattttttattgcgtctattgattcttctctctt Alignment from Spaln_aa2Genome GTAACTCAGAATCTCCCAATGAAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTG ttacttctagactgtgtgaattggtctataattgcttttgtctttgatagGTTACACAAAATCTACCAATGCAAGAAGGCAGCACAGAAGTCTCTCTCCTTAGAGTAGAGTGGTCTGTAGACTTTTCCTGTTCGCAACTTGgtcagatgccctgtatcattttttattgcgtctattgattcttctctctt Alignment from Spaln_nt2Genome GTAACTCAGAATCTCCCAATGAAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTG ttacttctagactgtgtgaattggtctataattgcttttgtctttgatagGTTACACAAAATCTACCAATGCAAGAAGGCAGCACAGAAGTCTCTCTCCTTAGAGTAGAGTGGTCTGTAGACTTTTCCTGTTCGCAACTTGgtcagatgccctgtatcattttttattgcgtctattgattcttctctctt Alignment from Pairagon GTAACTCAGAATCTCCCAATGAAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTG ttacttctagactgtgtgaattggtctataattgcttttgtctttgatagGTTACACAAAATCTACCAATGCAAGAAGGCAGCACAGAAGTCTCTCTCCTTAGAGTAGAGTGGTCTGTAGACTTTTCCTGTTCGCAACTTGgtcagatgccctgtatcattttttattgcgtctattgattcttctctctt Alignment from Exonerate_protein2genome GTAACTCAGAATCTCCCAATGAAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTG ttacttctagactgtgtgaattggtctataattgcttttgtctttgatagGTTACACAAAATCTACCAATGCAAGAAGGCAGCACAGAAGTCTCTCTCCTTAGAGTAGAGTGGTCTGTAGACTTTTCCTGTTCGCAACTTGgtcagatgccctgtatcattttttattgcgtctattgattcttctctctt Alignment from Exonerate_coding2genome GTAACTCAGAATCTCCCAATGAAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTG ttacttctagactgtgtgaattggtctataattgcttttgtctttgatagGTTACACAAAATCTACCAATGCAAGAAGGCAGCACAGAAGTCTCTCTCCTTAGAGTAGAGTGGTCTGTAGACTTTTCCTGTTCGCAACTTGgtcagatgccctgtatcattttttattgcgtctattgattcttctctctt Alignment from GeneWise GTAACTCAGAATCTCCCAATGAAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCCTGTTCACAGCTTG ttacttctagactgtgtgaattggtctataattgcttttgtctttgatagGTTACACAAAATCTACCAATGCAAGAAGGCAGCACAGAAGTCTCTCTCCTTAGAGTAGAGTGGTCTGTAGACTTTTCCTGTTCGCAACTTGgtcagatgccctgtatcattttttattgcgtctattgattcttctctctt #### Hnrnpul2_ID2404_8 --> 0 - 0 Original Alignment GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagctaacctaataatgcttctaatcctatgtgttctgctatgacagGTGATTCTGATGGTGGGAGTCCCTGGATCAGCAAAGACGCAGTGGGCACTAAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaggcaattggcgaggtctgattagcagaattggcagaggtcataacct Alignment from CESAR GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagctaacctaataatgcttctaatcctatgtgttctgctatgacagGTGATTCTGATGGTGGGAGTCCCTGGATCAGCAAAGACGCAGTGGGCACTAAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaggcaattggcgaggtctgattagcagaattggcagaggtcataacct Alignment from Spaln_aa2Genome GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagctaacctaataatgcttctaatcctatgtgttctgctatgacagGTGATTCTGATGGTGGGAGTCCCTGGATCAGCAAAGACGCAGTGGGCACTAAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaggcaattggcgaggtctgattagcagaattggcagaggtcataacct Alignment from Spaln_nt2Genome GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagctaacctaataatgcttctaatcctatgtgttctgctatgacagGTGATTCTGATGGTGGGAGTCCCTGGATCAGCAAAGACGCAGTGGGCACTAAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaggcaattggcgaggtctgattagcagaattggcagaggtcataacct Alignment from Pairagon GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagctaacctaataatgcttctaatcctatgtgttctgctatgacagGTGATTCTGATGGTGGGAGTCCCTGGATCAGCAAAGACGCAGTGGGCACTAAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaggcaattggcgaggtctgattagcagaattggcagaggtcataacct Alignment from Exonerate_protein2genome GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagctaacctaataatgcttctaatcctatgtgttctgctatgacagGTGATTCTGATGGTGGGAGTCCCTGGATCAGCAAAGACGCAGTGGGCACTAAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaggcaattggcgaggtctgattagcagaattggcagaggtcataacct Alignment from Exonerate_coding2genome GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagctaacctaataatgcttctaatcctatgtgttctgctatgacagGTGATTCTGATGGTGGGAGTCCCTGGATCAGCAAAGACGCAGTGGGCACTAAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaggcaattggcgaggtctgattagcagaattggcagaggtcataacct Alignment from GeneWise GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagctaacctaataatgcttctaatcctatgtgttctgctatgacagGTGATTCTGATGGTGGGAGTCCCTGGATCAGCAAAGACGCAGTGGGCACTAAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaggcaattggcgaggtctgattagcagaattggcagaggtcataacct #### Hps1_ID8614_14 --> 1 - 2 Original Alignment gGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGA---AATGTCACCATGGTGtc agttagaggatgcaagtagttattgcacttttatttctgttctttgccaggGAGAGACTTTTGTACTGGAAGGATTTTTCCTTGGTGAATAGCTGGAGAAGAAATGTCACCATGGTAgcgtgagttattgattatatattcataagattaatacagctattgaagcttc Alignment from CESAR gGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGC---CGGAGAAATGTCACCATGGTGtc agttagaggatgcaagtagttattgcacttttatttctgttctttgccaggGAGAGACTTTTGTACTGGAAGGATTTTTCCTTGGTGAATAGCTGGAGAAGAAATGTCACCATGGTAgcgtgagttattgattatatattcataagattaatacagctattgaagcttc Alignment from Spaln_aa2Genome GGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGC---CGGAGAAATGTCACCATGGTGTC agttagaggatgcaagtagttattgcacttttatttctgttctttgccagGGAGAGACTTTTGTACTGGAAGGATTTTTCCTTGGTGAATAGCTGGAGAAGAAATGTCACCATGGTAGCgtgagttattgattatatattcataagattaatacagctattgaagcttc Alignment from Spaln_nt2Genome GGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGG---AGAAATGTCACCATGGTGTC agttagaggatgcaagtagttattgcacttttatttctgttctttgccagGGAGAGACTTTTGTACTGGAAGGATTTTTCCTTGGTGAATAGCTGGAGAAGAAATGTCACCATGGTAGCgtgagttattgattatatattcataagattaatacagctattgaagcttc Alignment from Pairagon GGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGG---AGAAATGTCACCATGGTGTC agttagaggatgcaagtagttattgcacttttatttctgttctttgccagGGAGAGACTTTTGTACTGGAAGGATTTTTCCTTGGTGAATAGCTGGAGAAGAAATGTCACCATGGTAGCgtgagttattgattatatattcataagattaatacagctattgaagcttc Alignment from Exonerate_protein2genome GGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGC---CGGAGAAATGTCACCATGGTGTC agttagaggatgcaagtagttattgcacttttatttctgttctttgccagGGAGAGACTTTTGTACTGGAAGGATTTTTCCTTGGTGAATAGCTGGAGAAGAAATGTCACCATGGTAGCgtgagttattgattatatattcataagattaatacagctattgaagcttc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGC---CGGAGAAATGTCACCATGGTGTC agttagaggatgcaagtagttattgcacttttatttctgttctttgccagGGAGAGACTTTTGTACTGGAAGGATTTTTCCTTGGTGAATAGCTGGAGAAGAAATGTCACCATGGTAGCgtgagttattgattatatattcataagattaatacagctattgaagcttc #### Hps1_ID8615_13 --> 1 - 2 Original Alignment gCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGaa gccaatatattttctgtggattacatcttactttgtttttatatatacaggTTCCTCCAGGTCTGTGGGAAGTTAAAGCGACAGTTGTGTATAATGTACCAGCTCAGCTACCTGGTCACAGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCATATACAGGAC---CCCCAAAAA---ATGaagtagggggaccatgcccaaaaacttgtcaagctaggtcattatgtctgag Alignment from CESAR gCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGaa gccaatatattttctgtggattacatcttactttgtttttatatatacaggTTCCTCCAGGTCTGTGGGAAGTTAAAGCGACAGTTGTGTATAATGTACCAGCTCAGCTACCTGGTCACAGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCATATACAGGAC---CCCCAAAAA---ATGaagtagggggaccatgcccaaaaacttgtcaagctaggtcattatgtctgag Alignment from Spaln_aa2Genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA gccaatatattttctgtggattacatcttactttgtttttatatatacagGTTCCTCCAGGTCTGTGGGAAGTTAAAGCGACAGTTGTGTATAATGTACCAGCTCAGCTACCTGGTCACAGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCATATACAGGAC---CCCCAAAAA---ATGAAgtagggggaccatgcccaaaaacttgtcaagctaggtcattatgtctgag Alignment from Spaln_nt2Genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA gccaatatattttctgtggattacatcttactttgtttttatatatacagGTTCCTCCAGGTCTGTGGGAAGTTAAAGCGACAGTTGTGTATAATGTACCAGCTCAGCTACCTGGTCACAGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCATATACAGGACC---CCCAAAAA---ATGAAgtagggggaccatgcccaaaaacttgtcaagctaggtcattatgtctgag Alignment from Pairagon GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA gccaatatattttctgtggattacatcttactttgtttttatatatacagGTTCCTCCAGGTCTGTGGGAAGTTAAAGCGACAGTTGTGTATAATGTACCAGCTCAGCTACCTGGTCACAGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCATATACAGGACC---CCCAAAAA---ATGAAgtagggggaccatgcccaaaaacttgtcaagctaggtcattatgtctgag Alignment from Exonerate_protein2genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA gccaatatattttctgtggattacatcttactttgtttttatatatacagGTTCCTCCAGGTCTGTGGGAAGTTAAAGCGACAGTTGTGTATAATGTACCAGCTCAGCTACCTGGTCACAGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCATATACAGGAC---CCCCAAAAAATGAAGTAgggggaccatgcccaaaaacttgtcaagctaggtcattatgtctgag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA gccaatatattttctgtggattacatcttactttgtttttatatatacagGTTCCTCCAGGTCTGTGGGAAGTTAAAGCGACAGTTGTGTATAATGTACCAGCTCAGCTACCTGGTCACAGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCATATACAGGAC---CCCCAAAAA---ATGAAgtagggggaccatgcccaaaaacttgtcaagctaggtcattatgtctgag #### Hps1_ID8618_10 --> 0 - 0 Original Alignment ATGGCTGAGGACACCCCCGAGGGGCTGGCGTCTCACTCCCCAGAACTTCCCAGCCCCAGA---AGGATCTTCCTGGATGCCAACATAAAAGAAAACTACTGTCCCTTAGTGCCCCACACCATGTACTGCCTGCCCCTGTGGCCAGGCATCAACATGGTGCTGCTGACCAAG ctacccacccttcatttctcctttgatctttctcacatcttttgaaacagATGGCTGAAGACACCCCCAAGGGGCTGGCAGCCCATCCACCAGAACTCCCCAGCCCTAGAGCTCACAACTTTAGTGATGCAAACATCAAGGAAAACTACTGTCCCCTAGTGCCCCATGCAATGTTCTGCTTACCCCTGTGGCCAGGGATCAACATGATTCTTCTGACCAAGgtgagtaaattggacctgtgttattgcgcttggtgccccccctttttgtc Alignment from CESAR ATGGCTGAGGACACCCCCGAGGGGCTGGCGTCTCACTCCCCAGAACTTCCCAGCCCCAGA---AGGATCTTCCTGGATGCCAACATAAAAGAAAACTACTGTCCCTTAGTGCCCCACACCATGTACTGCCTGCCCCTGTGGCCAGGCATCAACATGGTGCTGCTGACCAAG ctacccacccttcatttctcctttgatctttctcacatcttttgaaacagATGGCTGAAGACACCCCCAAGGGGCTGGCAGCCCATCCACCAGAACTCCCCAGCCCTAGAGCTCACAACTTTAGTGATGCAAACATCAAGGAAAACTACTGTCCCCTAGTGCCCCATGCAATGTTCTGCTTACCCCTGTGGCCAGGGATCAACATGATTCTTCTGACCAAGgtgagtaaattggacctgtgttattgcgcttggtgccccccctttttttt Alignment from Spaln_aa2Genome ATGGCTGAGGACACCCCCGAGGGGCTGGCGTCTCACTCCCCAGAACTTCCCAGCCCCAGA---AGGATCTTCCTGGATGCCAACATAAAAGAAAACTACTGTCCCTTAGTGCCCCACACCATGTACTGCCTGCCCCTGTGGCCAGGCATCAACATGGTGCTGCTGACCAAG ctacccacccttcatttctcctttgatctttctcacatcttttgaaacagATGGCTGAAGACACCCCCAAGGGGCTGGCAGCCCATCCACCAGAACTCCCCAGCCCTAGAGCTCACAACTTTAGTGATGCAAACATCAAGGAAAACTACTGTCCCCTAGTGCCCCATGCAATGTTCTGCTTACCCCTGTGGCCAGGGATCAACATGATTCTTCTGACCAAGgtgagtaaattggacctgtgttattgcgcttggtgccccccctttttgtc Alignment from Spaln_nt2Genome ATGGCTGAGGACACCCCCGAGGGGCTGGCGTCTCACTCCCCAGAACTTCCCAGCCCCAGAAGG---ATCTTCCTGGATGCCAACATAAAAGAAAACTACTGTCCCTTAGTGCCCCACACCATGTACTGCCTGCCCCTGTGGCCAGGCATCAACATGGTGCTGCTGACCAAG ctacccacccttcatttctcctttgatctttctcacatcttttgaaacagATGGCTGAAGACACCCCCAAGGGGCTGGCAGCCCATCCACCAGAACTCCCCAGCCCTAGAGCTCACAACTTTAGTGATGCAAACATCAAGGAAAACTACTGTCCCCTAGTGCCCCATGCAATGTTCTGCTTACCCCTGTGGCCAGGGATCAACATGATTCTTCTGACCAAGgtgagtaaattggacctgtgttattgcgcttggtgccccccctttttgtc Alignment from Pairagon ATGGCTGAGGACACCCCCGAGGGGCTGGCGTCTCACTCCCCAGAACTTCCCAGCCCCAGAAGGATCTTCCTG--------------GATGCCAACATAAAAGAAAACTACTGTCCCTTAGTGCCCCACACCATGTACTGCCTGCCCCTGTGGCCAGGCATCAACATGGTGCTGCTGACCAAG ctacccacccttcatttctcctttgatctttctcacatcttttgaaacagATGGCTGAAGACACCCCCAAGGGGCTGGCAGCCCATCCACCAGAACTCCCCAGCCCTAGA-----------GCTCACAACTTTAGTGATGCAAACATCAAGGAAAACTACTGTCCCCTAGTGCCCCATGCAATGTTCTGCTTACCCCTGTGGCCAGGGATCAACATGATTCTTCTGACCAAGgtgagtaaattggacctgtgttattgcgcttggtgccccccctttttgtc Alignment from Exonerate_protein2genome ATGGCTGAGGACACCCCCGAGGGGCTGGCGTCTCACTCCCCAGAACTTCCCAGCCCCAGA---AGGATCTTCCTGGATGCCAACATAAAAGAAAACTACTGTCCCTTAGTGCCCCACACCATGTACTGCCTGCCCCTGTGGCCAGGCATCAACATGGTGCTGCTGACCAAG ctacccacccttcatttctcctttgatctttctcacatcttttgaaacagATGGCTGAAGACACCCCCAAGGGGCTGGCAGCCCATCCACCAGAACTCCCCAGCCCTAGAGCTCACAACTTTAGTGATGCAAACATCAAGGAAAACTACTGTCCCCTAGTGCCCCATGCAATGTTCTGCTTACCCCTGTGGCCAGGGATCAACATGATTCTTCTGACCAAGgtgagtaaattggacctgtgttattgcgcttggtgccccccctttttgtc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATGGCTGAGGACACCCCCGAGGGGCTGGCGTCTCACTCCCCAGAACTTCCCAGCCCCAGA---AGGATCTTCCTGGATGCCAACATAAAAGAAAACTACTGTCCCTTAGTGCCCCACACCATGTACTGCCTGCCCCTGTGGCCAGGCATCAACATGGTGCTGCTGACCAAG ctacccacccttcatttctcctttgatctttctcacatcttttgaaacagATGGCTGAAGACACCCCCAAGGGGCTGGCAGCCCATCCACCAGAACTCCCCAGCCCTAGAGCTCACAACTTTAGTGATGCAAACATCAAGGAAAACTACTGTCCCCTAGTGCCCCATGCAATGTTCTGCTTACCCCTGTGGCCAGGGATCAACATGATTCTTCTGACCAAGgtgagtaaattggacctgtgttattgcgcttggtgccccccctttttgtc #### Hps1_ID8623_5 --> 0 - 2 Original Alignment GCAGTGGAGCGGCTCATTCACCCCCAGCTCTGCGAACAGAGCATCGAGACGCTAGAGCGGCACGTGGTTCAAGCCATCAACGCCAGCCCCGAGCGGGGCGGTGAAGAGGTCCTGCACGCCTTCCTGCTGGTGCACTGCAAGCTGTTGGCTTTCTACTCCgg cgccaccttgcttgcccatacaccaccagtctcattttcctgcttcatagGCAGTAGAGCGTCTCATTCACCCCCAGCTCTGTGAACAGAGCATTGAGACACTAGAACGGCATGTGGTCCAGGCAATCAATGCCAGCCCTGAGCGGGGAGGTGAAGAAGTCCTGCATGCCTTCCTGCTGGTGCACTGCAAGCTGTTGGCCTTCTACTCTgggtgagttggtggagataaaaaaaactgtatctaacctttgtatacccccc Alignment from CESAR GCAGTGGAGCGGCTCATTCACCCCCAGCTCTGCGAACAGAGCATCGAGACGCTAGAGCGGCACGTGGTTCAAGCCATCAACGCCAGCCCCGAGCGGGGCGGTGAAGAGGTCCTGCACGCCTTCCTGCTGGTGCACTGCAAGCTGTTGGCTTTCTACTCCgg cgccaccttgcttgcccatacaccaccagtctcattttcctgcttcatagGCAGTAGAGCGTCTCATTCACCCCCAGCTCTGTGAACAGAGCATTGAGACACTAGAACGGCATGTGGTCCAGGCAATCAATGCCAGCCCTGAGCGGGGAGGTGAAGAAGTCCTGCATGCCTTCCTGCTGGTGCACTGCAAGCTGTTGGCCTTCTACTCTgggtgagttggtggagataaaaaaaactgtatctaacctttgtatacccccc Alignment from Spaln_aa2Genome GCAGTGGAGCGGCTCATTCACCCCCAGCTCTGCGAACAGAGCATCGAGACGCTAGAGCGGCACGTGGTTCAAGCCATCAACGCCAGCCCCGAGCGGGGCGGTGAAGAGGTCCTGCACGCCTTCCTGCTGGTGCACTGCAAGCTGTTGGCTTTCTACTCCGG cgccaccttgcttgcccatacaccaccagtctcattttcctgcttcatagGCAGTAGAGCGTCTCATTCACCCCCAGCTCTGTGAACAGAGCATTGAGACACTAGAACGGCATGTGGTCCAGGCAATCAATGCCAGCCCTGAGCGGGGAGGTGAAGAAGTCCTGCATGCCTTCCTGCTGGTGCACTGCAAGCTGTTGGCCTTCTACTCTGGgtgagttggtggagataaaaaaaactgtatctaacctttgtatacccccc Alignment from Spaln_nt2Genome GCAGTGGAGCGGCTCATTCACCCCCAGCTCTGCGAACAGAGCATCGAGACGCTAGAGCGGCACGTGGTTCAAGCCATCAACGCCAGCCCCGAGCGGGGCGGTGAAGAGGTCCTGCACGCCTTCCTGCTGGTGCACTGCAAGCTGTTGGCTTTCTACTCCGG cgccaccttgcttgcccatacaccaccagtctcattttcctgcttcatagGCAGTAGAGCGTCTCATTCACCCCCAGCTCTGTGAACAGAGCATTGAGACACTAGAACGGCATGTGGTCCAGGCAATCAATGCCAGCCCTGAGCGGGGAGGTGAAGAAGTCCTGCATGCCTTCCTGCTGGTGCACTGCAAGCTGTTGGCCTTCTACTCTGGgtgagttggtggagataaaaaaaactgtatctaacctttgtatacccccc Alignment from Pairagon GCAGTGGAGCGGCTCATTCACCCCCAGCTCTGCGAACAGAGCATCGAGACGCTAGAGCGGCACGTGGTTCAAGCCATCAACGCCAGCCCCGAGCGGGGCGGTGAAGAGGTCCTGCACGCCTTCCTGCTGGTGCACTGCAAGCTGTTGGCTTTCTACTCCGG cgccaccttgcttgcccatacaccaccagtctcattttcctgcttcatagGCAGTAGAGCGTCTCATTCACCCCCAGCTCTGTGAACAGAGCATTGAGACACTAGAACGGCATGTGGTCCAGGCAATCAATGCCAGCCCTGAGCGGGGAGGTGAAGAAGTCCTGCATGCCTTCCTGCTGGTGCACTGCAAGCTGTTGGCCTTCTACTCTGGgtgagttggtggagataaaaaaaactgtatctaacctttgtatacccccc Alignment from Exonerate_protein2genome cgccaccttgcttgcccatacaccaccagtctcattttcctgcttcataggcagtagagcgtctcattcacccccagctctgtgaacagagcattgagacactagaacggcatgtggtccaggcaatcaatgccagccctgagcggggaggtgaagaagtcctgcatgccttcctgctggtgcactgcaagctgttggccttctactctgggtgagttggtggagataaaaaaaactgtatctaacctttgtatacccccc Alignment from Exonerate_coding2genome GCAGTGGAGCGGCTCATTCACCCCCAGCTCTGCGAACAGAGCATCGAGACGCTAGAGCGGCACGTGGTTCAAGCCATCAACGCCAGCCCCGAGCGGGGCGGTGAAGAGGTCCTGCACGCCTTCCTGCTGGTGCACTGCAAGCTGTTGGCTTTCTACTCCGG cgccaccttgcttgcccatacaccaccagtctcattttcctgcttcatagGCAGTAGAGCGTCTCATTCACCCCCAGCTCTGTGAACAGAGCATTGAGACACTAGAACGGCATGTGGTCCAGGCAATCAATGCCAGCCCTGAGCGGGGAGGTGAAGAAGTCCTGCATGCCTTCCTGCTGGTGCACTGCAAGCTGTTGGCCTTCTACTCTGGgtgagttggtggagataaaaaaaactgtatctaacctttgtatacccccc Alignment from GeneWise GCAGTGGAGCGGCTCATTCACCCCCAGCTCTGCGAACAGAGCATCGAGACGCTAGAGCGGCACGTGGTTCAAGCCATCAACGCCAGCCCCGAGCGGGGCGGTGAAGAGGTCCTGCACGCCTTCCTGCTGGTGCACTGCAAGCTGTTGGCTTTCTACTCCGG cgccaccttgcttgcccatacaccaccagtctcattttcctgcttcatagGCAGTAGAGCGTCTCATTCACCCCCAGCTCTGTGAACAGAGCATTGAGACACTAGAACGGCATGTGGTCCAGGCAATCAATGCCAGCCCTGAGCGGGGAGGTGAAGAAGTCCTGCATGCCTTCCTGCTGGTGCACTGCAAGCTGTTGGCCTTCTACTCTGGgtgagttggtggagataaaaaaaactgtatctaacctttgtatacccccc #### Hps1_ID8624_4 --> 1 - 0 Original Alignment gCTTCGTCCACCCGACCTGGAAGAGCGTGCCCGGGTGTGGAAGCACTTTCAGAGACTGCTGGGGACCTACAGCTACCTGCGGGACCGGGAGCAGAGCTTTGCTGTGGAG atataacaaaatgactcttcatcccttcttaattgtgtttgaaattacaggCTTTGTCCCCCTGACCTCGAAGAGCGTGGCCGTGTGTGGAAACACTGCCAGAGACTGCTGGGAACCCACAGT---------TACAAGGAGGAGAGCTTTGCTGTGGAGgtaggttgggctgatgggcataaagaaccaagcaagtcccatgagaatta Alignment from CESAR gCTTCGTCCACCCGACCTGGAAGAGCGTGCCCGGGTGTGGAAGCACTTTCAGAGACTGCTGGGGACCTACAGCTACCTGCGGGACCGGGAGCAGAGCTTTGCTGTGGAG atataacaaaatgactcttcatcccttcttaattgtgtttgaaattacaggCTTTGTCCCCCTGACCTCGAAGAGCGTGGCCGTGTGTGGAAACACTGCCAGAGACTGCTGGGAACCCACAGTTAC---------AAGGAGGAGAGCTTTGCTGTGGAGgtaggttgggctgatgggcataaagaaccaagcaagtcccatgagaatta Alignment from Spaln_aa2Genome GCTTCGTCCACCCGACCTGGAAGAGCGTGCCCGGGTGTGGAAGCACTTTCAGAGACTGCTGGGGACCTACAGCTACCTGCGGGACCGGGAGCAGAGCTTTGCTGTGGAG atataacaaaatgactcttcatcccttcttaattgtgtttgaaattacagGCTTTGTCCCCCTGACCTCGAAGAGCGTGGCCGTGTGTGGAAACACTGCCAGAGACTGCTGGGAACCCACAGTTAC---------AAGGAGGAGAGCTTTGCTGTGGAGgtaggttgggctgatgggcataaagaaccaagcaagtcccatgagaatta Alignment from Spaln_nt2Genome GCTTCGTCCACCCGACCTGGAAGAGCGTGCCCGGGTGTGGAAGCACTTTCAGAGACTGCTGGGGACCTACAGCTACCTGCGGGACCGGGAGCAGAGCTTTGCTGTGGAG atataacaaaatgactcttcatcccttcttaattgtgtttgaaattacagGCTTTGTCCCCCTGACCTCGAAGAGCGTGGCCGTGTGTGGAAACACTGCCAGAGACTGCTGGGAACCCACAGTT---------ACAAGGAGGAGAGCTTTGCTGTGGAGgtaggttgggctgatgggcataaagaaccaagcaagtcccatgagaatta Alignment from Pairagon GCTTCGTCCACCCGACCTGGAAGAGCGTGCCCGGGTGTGGAAGCACTTTCAGAGACTGCTGGGGACCTACAGCTACCTGCGGGACCGGGAGCAGAGCTTTGCTGTGGAG atataacaaaatgactcttcatcccttcttaattgtgtttgaaattacagGCTTTGTCCCCCTGACCTCGAAGAGCGTGGCCGTGTGTGGAAACACTGCCAGAGACTGCTGGGAACCCACAGTT---------ACAAGGAGGAGAGCTTTGCTGTGGAGgtaggttgggctgatgggcataaagaaccaagcaagtcccatgagaatta Alignment from Exonerate_protein2genome atataacaaaatgactcttcatcccttcttaattgtgtttgaaattacaggctttgtccccctgacctcgaagagcgtggccgtgtgtggaaacactgccagagactgctgggaacccacagttacaaggaggagagctttgctgtggaggtaggttgggctgatgggcataaagaaccaagcaagtcccatgagaatta Alignment from Exonerate_coding2genome GCTTCGTCCACCCGACCTGGAAGAGCGTGCCCGGGTGTGGAAGCACTTTCAGAGACTGCTGGGGACCTACAGCTACCTGCGGGACCGGGAGCAGAGCTTTGCTGTGGAG atataacaaaatgactcttcatcccttcttaattgtgtttgaaattacagGCTTTGTCCCCCTGACCTCGAAGAGCGTGGCCGTGTGTGGAAACACTGCCAGAGACTGCTGGGAACCCACAGTTAC---------AAGGAGGAGAGCTTTGCTGTGGAGgtaggttgggctgatgggcataaagaaccaagcaagtcccatgagaatta Alignment from GeneWise GCTTCGTCCACCCGACCTGGAAGAGCGTGCCCGGGTGTGGAAGCACTTTCAGAGACTGCTGGGGACCTACAGCTACCTGCGGGACCGGGAGCAGAGCTTTGCTGTGGAG atataacaaaatgactcttcatcccttcttaattgtgtttgaaattacagGCTTTGTCCCCCTGACCTCGAAGAGCGTGGCCGTGTGTGGAAACACTGCCAGAGACTGCTGGGAACCCACAGTTAC---------AAGGAGGAGAGCTTTGCTGTGGAGgtaggttgggctgatgggcataaagaaccaagcaagtcccatgagaatta #### Hpse2_ID8648_10 --> 0 - 2 Original Alignment GACTATTGGCTTTCTCTGCTTTACAAGCGTCTGATTGGCCCCAAAGTCCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGGCCAGGAAGAGTCATCCGAGACAAACTAAGAATCTATGCTCACTGCACAAACCACCACaa gcctacaaggagctacaaacaagccaatccccttctctttgttgctctagGACTATTGGCTTTCTCTGCTTTATAAGCGTCTAATTGGCCCTAAAGTTCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGACCAGGAAGAGTCATTCGGGACAAACTAAGAATCTATTCCCACTGCACAAATCATCATaagtaaggtttcgctcaaggccgggggaagaggcgcccaataggagtgttta Alignment from CESAR GACTATTGGCTTTCTCTGCTTTACAAGCGTCTGATTGGCCCCAAAGTCCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGGCCAGGAAGAGTCATCCGAGACAAACTAAGAATCTATGCTCACTGCACAAACCACCACaa gcctacaaggagctacaaacaagccaatccccttctctttgttgctctagGACTATTGGCTTTCTCTGCTTTATAAGCGTCTAATTGGCCCTAAAGTTCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGACCAGGAAGAGTCATTCGGGACAAACTAAGAATCTATTCCCACTGCACAAATCATCATaagtaaggtttcgctcaaggccgggggaagaggcgcccaataggagtgttta Alignment from Spaln_aa2Genome GACTATTGGCTTTCTCTGCTTTACAAGCGTCTGATTGGCCCCAAAGTCCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGGCCAGGAAGAGTCATCCGAGACAAACTAAGAATCTATGCTCACTGCACAAACCACCACAA gcctacaaggagctacaaacaagccaatccccttctctttgttgctctagGACTATTGGCTTTCTCTGCTTTATAAGCGTCTAATTGGCCCTAAAGTTCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGACCAGGAAGAGTCATTCGGGACAAACTAAGAATCTATTCCCACTGCACAAATCATCATAAgtaaggtttcgctcaaggccgggggaagaggcgcccaataggagtgttta Alignment from Spaln_nt2Genome GACTATTGGCTTTCTCTGCTTTACAAGCGTCTGATTGGCCCCAAAGTCCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGGCCAGGAAGAGTCATCCGAGACAAACTAAGAATCTATGCTCACTGCACAAACCACCACAA gcctacaaggagctacaaacaagccaatccccttctctttgttgctctagGACTATTGGCTTTCTCTGCTTTATAAGCGTCTAATTGGCCCTAAAGTTCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGACCAGGAAGAGTCATTCGGGACAAACTAAGAATCTATTCCCACTGCACAAATCATCATAAgtaaggtttcgctcaaggccgggggaagaggcgcccaataggagtgttta Alignment from Pairagon GACTATTGGCTTTCTCTGCTTTACAAGCGTCTGATTGGCCCCAAAGTCCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGGCCAGGAAGAGTCATCCGAGACAAACTAAGAATCTATGCTCACTGCACAAACCACCACAA gcctacaaggagctacaaacaagccaatccccttctctttgttgctctagGACTATTGGCTTTCTCTGCTTTATAAGCGTCTAATTGGCCCTAAAGTTCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGACCAGGAAGAGTCATTCGGGACAAACTAAGAATCTATTCCCACTGCACAAATCATCATAAgtaaggtttcgctcaaggccgggggaagaggcgcccaataggagtgttta Alignment from Exonerate_protein2genome GACTATTGGCTTTCTCTGCTTTACAAGCGTCTGATTGGCCCCAAAGTCCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGGCCAGGAAGAGTCATCCGAGACAAACTAAGAATCTATGCTCACTGCACAAACCACCACAA gcctacaaggagctacaaacaagccaatccccttctctttgttgctctagGACTATTGGCTTTCTCTGCTTTATAAGCGTCTAATTGGCCCTAAAGTTCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGACCAGGAAGAGTCATTCGGGACAAACTAAGAATCTATTCCCACTGCACAAATCATCATAAgtaaggtttcgctcaaggccgggggaagaggcgcccaataggagtgttta Alignment from Exonerate_coding2genome GACTATTGGCTTTCTCTGCTTTACAAGCGTCTGATTGGCCCCAAAGTCCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGGCCAGGAAGAGTCATCCGAGACAAACTAAGAATCTATGCTCACTGCACAAACCACCACAA gcctacaaggagctacaaacaagccaatccccttctctttgttgctctagGACTATTGGCTTTCTCTGCTTTATAAGCGTCTAATTGGCCCTAAAGTTCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGACCAGGAAGAGTCATTCGGGACAAACTAAGAATCTATTCCCACTGCACAAATCATCATAAgtaaggtttcgctcaaggccgggggaagaggcgcccaataggagtgttta Alignment from GeneWise GACTATTGGCTTTCTCTGCTTTACAAGCGTCTGATTGGCCCCAAAGTCCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGGCCAGGAAGAGTCATCCGAGACAAACTAAGAATCTATGCTCACTGCACAAACCACCACAA gcctacaaggagctacaaacaagccaatccccttctctttgttgctctagGACTATTGGCTTTCTCTGCTTTATAAGCGTCTAATTGGCCCTAAAGTTCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGACCAGGAAGAGTCATTCGGGACAAACTAAGAATCTATTCCCACTGCACAAATCATCATAAgtaaggtttcgctcaaggccgggggaagaggcgcccaataggagtgttta #### Hpse2_ID8671_9 --> 1 - 0 Original Alignment aTGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTCGTGATACGACATTCATTTTTCGACCACGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCA ttgtcatatagtcctagaaggtttataaattattatttctcctttaatagaTGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTTGTGATACGACATTCATTTTTCGACCATGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCAgtgagcgctggtctagatttccaaggattctgcagaccattttgtcacaa Alignment from CESAR aTGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTCGTGATACGACATTCATTTTTCGACCACGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCA ttgtcatatagtcctagaaggtttataaattattatttctcctttaatagaTGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTTGTGATACGACATTCATTTTTCGACCATGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCAgtgagcgctggtctagatttccaaggattctgcagaccattttgtcacaa Alignment from Spaln_aa2Genome ATGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTCGTGATACGACATTCATTTTTCGACCACGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCA ttgtcatatagtcctagaaggtttataaattattatttctcctttaatagATGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTTGTGATACGACATTCATTTTTCGACCATGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCAgtgagcgctggtctagatttccaaggattctgcagaccattttgtcacaa Alignment from Spaln_nt2Genome ATGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTCGTGATACGACATTCATTTTTCGACCACGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCA ttgtcatatagtcctagaaggtttataaattattatttctcctttaatagATGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTTGTGATACGACATTCATTTTTCGACCATGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCAgtgagcgctggtctagatttccaaggattctgcagaccattttgtcacaa Alignment from Pairagon ATGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTCGTGATACGACATTCATTTTTCGACCACGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCA ttgtcatatagtcctagaaggtttataaattattatttctcctttaatagATGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTTGTGATACGACATTCATTTTTCGACCATGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCAgtgagcgctggtctagatttccaaggattctgcagaccattttgtcacaa Alignment from Exonerate_protein2genome ATGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTCGTGATACGACATTCATTTTTCGACCACGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCA ttgtcatatagtcctagaaggtttataaattattatttctcctttaatagATGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTTGTGATACGACATTCATTTTTCGACCATGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCAgtgagcgctggtctagatttccaaggattctgcagaccattttgtcacaa Alignment from Exonerate_coding2genome ATGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTCGTGATACGACATTCATTTTTCGACCACGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCA ttgtcatatagtcctagaaggtttataaattattatttctcctttaatagATGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTTGTGATACGACATTCATTTTTCGACCATGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCAgtgagcgctggtctagatttccaaggattctgcagaccattttgtcacaa Alignment from GeneWise ATGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTCGTGATACGACATTCATTTTTCGACCACGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCA ttgtcatatagtcctagaaggtttataaattattatttctcctttaatagATGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTTGTGATACGACATTCATTTTTCGACCATGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCAgtgagcgctggtctagatttccaaggattctgcagaccattttgtcacaa #### Hpse2_ID8719_2 --> 1 - 1 Original Alignment cTCCAAGCGTCTGGTGACCTTGGCCCGGGGACTCTCGCCCGCCTTTCTGCGCTTCGGGGGCAAAAGGACGGATTTCCTGCAGTTCCAGAACCTGAGAAATCCGGCGAAAAGCCGCGGGGGCCCGGGCCCGGATTACTATCTCAAAAACTATGAGGATg ctgttgaagtcaccctacatcctttcctcactaaagtggtttgtttgcagcTCCAAGTGCCTGGTTACCTTAGCACGAGGACTCTCACCTGCCTTTCTGCGCTTTGGGGGCAAAAGGATGGATTTCTTGCAGTTCCAAAACCTAAGAAATCCAGCAAAAAGCCGTGGGGGTCCAGGCCCAGATTATTATCTCAAAAACTATGAGGATggtaaggaagaaatttttcttgttggcaatgccaggggaagaagagctaag Alignment from CESAR cTCCAAGCGTCTGGTGACCTTGGCCCGGGGACTCTCGCCCGCCTTTCTGCGCTTCGGGGGCAAAAGGACGGATTTCCTGCAGTTCCAGAACCTGAGAAATCCGGCGAAAAGCCGCGGGGGCCCGGGCCCGGATTACTATCTCAAAAACTATGAGGATg ctgttgaagtcaccctacatcctttcctcactaaagtggtttgtttgcagcTCCAAGTGCCTGGTTACCTTAGCACGAGGACTCTCACCTGCCTTTCTGCGCTTTGGGGGCAAAAGGATGGATTTCTTGCAGTTCCAAAACCTAAGAAATCCAGCAAAAAGCCGTGGGGGTCCAGGCCCAGATTATTATCTCAAAAACTATGAGGATggtaaggaagaaatttttcttgttggcaatgccaggggaagaagagctaag Alignment from Spaln_aa2Genome CTCCAAGCGTCTGGTGACCTTGGCCCGGGGACTCTCGCCCGCCTTTCTGCGCTTCGGGGGCAAAAGGACGGATTTCCTGCAGTTCCAGAACCTGAGAAATCCGGCGAAAAGCCGCGGGGGCCCGGGCCCGGATTACTATCTCAAAAACTATGAGGATG ctgttgaagtcaccctacatcctttcctcactaaagtggtttgtttgcagCTCCAAGTGCCTGGTTACCTTAGCACGAGGACTCTCACCTGCCTTTCTGCGCTTTGGGGGCAAAAGGATGGATTTCTTGCAGTTCCAAAACCTAAGAAATCCAGCAAAAAGCCGTGGGGGTCCAGGCCCAGATTATTATCTCAAAAACTATGAGGATGgtaaggaagaaatttttcttgttggcaatgccaggggaagaagagctaag Alignment from Spaln_nt2Genome CTCCAAGCGTCTGGTGACCTTGGCCCGGGGACTCTCGCCCGCCTTTCTGCGCTTCGGGGGCAAAAGGACGGATTTCCTGCAGTTCCAGAACCTGAGAAATCCGGCGAAAAGCCGCGGGGGCCCGGGCCCGGATTACTATCTCAAAAACTATGAGGATG ctgttgaagtcaccctacatcctttcctcactaaagtggtttgtttgcagCTCCAAGTGCCTGGTTACCTTAGCACGAGGACTCTCACCTGCCTTTCTGCGCTTTGGGGGCAAAAGGATGGATTTCTTGCAGTTCCAAAACCTAAGAAATCCAGCAAAAAGCCGTGGGGGTCCAGGCCCAGATTATTATCTCAAAAACTATGAGGATGgtaaggaagaaatttttcttgttggcaatgccaggggaagaagagctaag Alignment from Pairagon CTCCAAGCGTCTGGTGACCTTGGCCCGGGGACTCTCGCCCGCCTTTCTGCGCTTCGGGGGCAAAAGGACGGATTTCCTGCAGTTCCAGAACCTGAGAAATCCGGCGAAAAGCCGCGGGGGCCCGGGCCCGGATTACTATCTCAAAAACTATGAGGATG ctgttgaagtcaccctacatcctttcctcactaaagtggtttgtttgcagCTCCAAGTGCCTGGTTACCTTAGCACGAGGACTCTCACCTGCCTTTCTGCGCTTTGGGGGCAAAAGGATGGATTTCTTGCAGTTCCAAAACCTAAGAAATCCAGCAAAAAGCCGTGGGGGTCCAGGCCCAGATTATTATCTCAAAAACTATGAGGATGgtaaggaagaaatttttcttgttggcaatgccaggggaagaagagctaag Alignment from Exonerate_protein2genome CTCCAAGCGTCTGGTGACCTTGGCCCGGGGACTCTCGCCCGCCTTTCTGCGCTTCGGGGGCAAAAGGACGGATTTCCTGCAGTTCCAGAACCTGAGAAATCCGGCGAAAAGCCGCGGGGGCCCGGGCCCGGATTACTATCTCAAAAACTATGAGGATG ctgttgaagtcaccctacatcctttcctcactaaagtggtttgtttgcagCTCCAAGTGCCTGGTTACCTTAGCACGAGGACTCTCACCTGCCTTTCTGCGCTTTGGGGGCAAAAGGATGGATTTCTTGCAGTTCCAAAACCTAAGAAATCCAGCAAAAAGCCGTGGGGGTCCAGGCCCAGATTATTATCTCAAAAACTATGAGGATGgtaaggaagaaatttttcttgttggcaatgccaggggaagaagagctaag Alignment from Exonerate_coding2genome CTCCAAGCGTCTGGTGACCTTGGCCCGGGGACTCTCGCCCGCCTTTCTGCGCTTCGGGGGCAAAAGGACGGATTTCCTGCAGTTCCAGAACCTGAGAAATCCGGCGAAAAGCCGCGGGGGCCCGGGCCCGGATTACTATCTCAAAAACTATGAGGATG ctgttgaagtcaccctacatcctttcctcactaaagtggtttgtttgcagCTCCAAGTGCCTGGTTACCTTAGCACGAGGACTCTCACCTGCCTTTCTGCGCTTTGGGGGCAAAAGGATGGATTTCTTGCAGTTCCAAAACCTAAGAAATCCAGCAAAAAGCCGTGGGGGTCCAGGCCCAGATTATTATCTCAAAAACTATGAGGATGgtaaggaagaaatttttcttgttggcaatgccaggggaagaagagctaag Alignment from GeneWise CTCCAAGCGTCTGGTGACCTTGGCCCGGGGACTCTCGCCCGCCTTTCTGCGCTTCGGGGGCAAAAGGACGGATTTCCTGCAGTTCCAGAACCTGAGAAATCCGGCGAAAAGCCGCGGGGGCCCGGGCCCGGATTACTATCTCAAAAACTATGAGGATG ctgttgaagtcaccctacatcctttcctcactaaagtggtttgtttgcagCTCCAAGTGCCTGGTTACCTTAGCACGAGGACTCTCACCTGCCTTTCTGCGCTTTGGGGGCAAAAGGATGGATTTCTTGCAGTTCCAAAACCTAAGAAATCCAGCAAAAAGCCGTGGGGGTCCAGGCCCAGATTATTATCTCAAAAACTATGAGGATGgtaaggaagaaatttttcttgttggcaatgccaggggaagaagagctaag #### Hspa12a_ID12804_11 --> 1 - 1 Original Alignment tGTGGACTTTGTGAAGTGGTCCTCCCAGGGCATGCTGAGGATGAGCCCAGATGCCATGAACGCCCTCTTCAAGCCGACCATCGACAGCATCATCGAGCACCTCc attggcctgacactttccatgcatgctgacctaaccactactgaccctagtGTGGACTTAGTGAAGTGGTCTTCCCAGGGCATGCTGAGGATGAGCCCAGATGCCATGAATGCCCTCTTTAGGCCAACGATTGATAGCATTGTTGAACACCTCcgtgagttctagtcacctcctattgctgtgttactggtatccattcatcta Alignment from CESAR tGTGGACTTTGTGAAGTGGTCCTCCCAGGGCATGCTGAGGATGAGCCCAGATGCCATGAACGCCCTCTTCAAGCCGACCATCGACAGCATCATCGAGCACCTCc attggcctgacactttccatgcatgctgacctaaccactactgaccctagtGTGGACTTAGTGAAGTGGTCTTCCCAGGGCATGCTGAGGATGAGCCCAGATGCCATGAATGCCCTCTTTAGGCCAACGATTGATAGCATTGTTGAACACCTCcgtgagttctagtcacctcctattgctgtgttactggtatccattcatcta Alignment from Spaln_aa2Genome TGTGGACTTTGTGAAGTGGTCCTCCCAGGGCATGCTGAGGATGAGCCCAGATGCCATGAACGCCCTCTTCAAGCCGACCATCGACAGCATCATCGAGCACCTCC attggcctgacactttccatgcatgctgacctaaccactactgaccctagTGTGGACTTAGTGAAGTGGTCTTCCCAGGGCATGCTGAGGATGAGCCCAGATGCCATGAATGCCCTCTTTAGGCCAACGATTGATAGCATTGTTGAACACCTCCgtgagttctagtcacctcctattgctgtgttactggtatccattcatcta Alignment from Spaln_nt2Genome TGTGGACTTTGTGAAGTGGTCCTCCCAGGGCATGCTGAGGATGAGCCCAGATGCCATGAACGCCCTCTTCAAGCCGACCATCGACAGCATCATCGAGCACCTCC attggcctgacactttccatgcatgctgacctaaccactactgaccctagTGTGGACTTAGTGAAGTGGTCTTCCCAGGGCATGCTGAGGATGAGCCCAGATGCCATGAATGCCCTCTTTAGGCCAACGATTGATAGCATTGTTGAACACCTCCgtgagttctagtcacctcctattgctgtgttactggtatccattcatcta Alignment from Pairagon TGTGGACTTTGTGAAGTGGTCCTCCCAGGGCATGCTGAGGATGAGCCCAGATGCCATGAACGCCCTCTTCAAGCCGACCATCGACAGCATCATCGAGCACCTCC attggcctgacactttccatgcatgctgacctaaccactactgaccctagTGTGGACTTAGTGAAGTGGTCTTCCCAGGGCATGCTGAGGATGAGCCCAGATGCCATGAATGCCCTCTTTAGGCCAACGATTGATAGCATTGTTGAACACCTCCgtgagttctagtcacctcctattgctgtgttactggtatccattcatcta Alignment from Exonerate_protein2genome TGTGGACTTTGTGAAGTGGTCCTCCCAGGGCATGCTGAGGATGAGCCCAGATGCCATGAACGCCCTCTTCAAGCCGACCATCGACAGCATCATCGAGCACCTCC attggcctgacactttccatgcatgctgacctaaccactactgaccctagTGTGGACTTAGTGAAGTGGTCTTCCCAGGGCATGCTGAGGATGAGCCCAGATGCCATGAATGCCCTCTTTAGGCCAACGATTGATAGCATTGTTGAACACCTCCgtgagttctagtcacctcctattgctgtgttactggtatccattcatcta Alignment from Exonerate_coding2genome TGTGGACTTTGTGAAGTGGTCCTCCCAGGGCATGCTGAGGATGAGCCCAGATGCCATGAACGCCCTCTTCAAGCCGACCATCGACAGCATCATCGAGCACCTCC attggcctgacactttccatgcatgctgacctaaccactactgaccctagTGTGGACTTAGTGAAGTGGTCTTCCCAGGGCATGCTGAGGATGAGCCCAGATGCCATGAATGCCCTCTTTAGGCCAACGATTGATAGCATTGTTGAACACCTCCgtgagttctagtcacctcctattgctgtgttactggtatccattcatcta Alignment from GeneWise TGTGGACTTTGTGAAGTGGTCCTCCCAGGGCATGCTGAGGATGAGCCCAGATGCCATGAACGCCCTCTTCAAGCCGACCATCGACAGCATCATCGAGCACCTCC attggcctgacactttccatgcatgctgacctaaccactactgaccctagTGTGGACTTAGTGAAGTGGTCTTCCCAGGGCATGCTGAGGATGAGCCCAGATGCCATGAATGCCCTCTTTAGGCCAACGATTGATAGCATTGTTGAACACCTCCgtgagttctagtcacctcctattgctgtgttactggtatccattcatcta #### Hspa12a_ID12807_8 --> 2 - 1 Original Alignment ctAAGGAACATGTTCGACGTAACCGGCAGAGTCGGACCTTTTTGGTGGAGAATGTCATAGGAGAAATCTGGTCTGAGCTGGAGGAAg taaaactgtctcatgcctacccatactaccaacctacctttctcccccagctAAGGAACATCTCCGACGTAACAGACAGAGTAGGACCTTTTTGGTTGAGAATGTCATAGGAGAGATCTGGTCTGAGCTGGAGGAAggtaaggtgtagtgtctttacgctcatcttatcatagattcttcgaacaga Alignment from CESAR ctAAGGAACATGTTCGACGTAACCGGCAGAGTCGGACCTTTTTGGTGGAGAATGTCATAGGAGAAATCTGGTCTGAGCTGGAGGAAg taaaactgtctcatgcctacccatactaccaacctacctttctcccccagctAAGGAACATCTCCGACGTAACAGACAGAGTAGGACCTTTTTGGTTGAGAATGTCATAGGAGAGATCTGGTCTGAGCTGGAGGAAggtaaggtgtagtgtctttacgctcatcttatcatagattcttcgaacaga Alignment from Spaln_aa2Genome CTAAGGAACATGTTCGACGTAACCGGCAGAGTCGGACCTTTTTGGTGGAGAATGTCATAGGAGAAATCTGGTCTGAGCTGGAGGAAG taaaactgtctcatgcctacccatactaccaacctacctttctcccccagCTAAGGAACATCTCCGACGTAACAGACAGAGTAGGACCTTTTTGGTTGAGAATGTCATAGGAGAGATCTGGTCTGAGCTGGAGGAAGgtaaggtgtagtgtctttacgctcatcttatcatagattcttcgaacaga Alignment from Spaln_nt2Genome CTAAGGAACATGTTCGACGTAACCGGCAGAGTCGGACCTTTTTGGTGGAGAATGTCATAGGAGAAATCTGGTCTGAGCTGGAGGAAG taaaactgtctcatgcctacccatactaccaacctacctttctcccccagCTAAGGAACATCTCCGACGTAACAGACAGAGTAGGACCTTTTTGGTTGAGAATGTCATAGGAGAGATCTGGTCTGAGCTGGAGGAAGgtaaggtgtagtgtctttacgctcatcttatcatagattcttcgaacaga Alignment from Pairagon CTAAGGAACATGTTCGACGTAACCGGCAGAGTCGGACCTTTTTGGTGGAGAATGTCATAGGAGAAATCTGGTCTGAGCTGGAGGAAG taaaactgtctcatgcctacccatactaccaacctacctttctcccccagCTAAGGAACATCTCCGACGTAACAGACAGAGTAGGACCTTTTTGGTTGAGAATGTCATAGGAGAGATCTGGTCTGAGCTGGAGGAAGgtaaggtgtagtgtctttacgctcatcttatcatagattcttcgaacaga Alignment from Exonerate_protein2genome CTAAGGAACATGTTCGACGTAACCGGCAGAGTCGGACCTTTTTGGTGGAGAATGTCATAGGAGAAATCTGGTCTGAGCTGGAGGAAG taaaactgtctcatgcctacccatactaccaacctacctttctcccccagCTAAGGAACATCTCCGACGTAACAGACAGAGTAGGACCTTTTTGGTTGAGAATGTCATAGGAGAGATCTGGTCTGAGCTGGAGGAAGgtaaggtgtagtgtctttacgctcatcttatcatagattcttcgaacaga Alignment from Exonerate_coding2genome CTAAGGAACATGTTCGACGTAACCGGCAGAGTCGGACCTTTTTGGTGGAGAATGTCATAGGAGAAATCTGGTCTGAGCTGGAGGAAG taaaactgtctcatgcctacccatactaccaacctacctttctcccccagCTAAGGAACATCTCCGACGTAACAGACAGAGTAGGACCTTTTTGGTTGAGAATGTCATAGGAGAGATCTGGTCTGAGCTGGAGGAAGgtaaggtgtagtgtctttacgctcatcttatcatagattcttcgaacaga Alignment from GeneWise CTAAGGAACATGTTCGACGTAACCGGCAGAGTCGGACCTTTTTGGTGGAGAATGTCATAGGAGAAATCTGGTCTGAGCTGGAGGAAG taaaactgtctcatgcctacccatactaccaacctacctttctcccccagCTAAGGAACATCTCCGACGTAACAGACAGAGTAGGACCTTTTTGGTTGAGAATGTCATAGGAGAGATCTGGTCTGAGCTGGAGGAAGgtaaggtgtagtgtctttacgctcatcttatcatagattcttcgaacaga #### Hspa12a_ID12808_7 --> 0 - 1 Original Alignment GCAGGCCTGGCCTCCCCCGAGAACTCGGAGCAGCTCATCATTGCCCTGGAGCCCGAGGCCGCCTCCATCTACTGCCGGAAGCTTCGGCTGCACCAGATGATTGAGCTCAGCAGCAAGGCGGTGGTCAATGGGTACAGTGCCAGTGACACAGTAGGAGCGGGGTTTGCACAGg gtctctgcccctagaatcctgagccaccatgtcattgtcactttccaaagGCAGGCCTGGCCTCTCCTGAGAACGCTGAACAGCTAATCATCACCCTTAAGCACAAGGCCGCCTCCATCTACTGCCGAAAGCTTCGGCTCCACCAGATGATTGAACTTAGCAGCAAGGCTGTGGTCAATGGGTATAGCAAAAGTGACACAGTAGGAGTGGAGTTTGCACAGggtaagggtttacacccttcttccctcgctcgttcagcctccttggtcaat Alignment from CESAR GCAGGCCTGGCCTCCCCCGAGAACTCGGAGCAGCTCATCATTGCCCTGGAGCCCGAGGCCGCCTCCATCTACTGCCGGAAGCTTCGGCTGCACCAGATGATTGAGCTCAGCAGCAAGGCGGTGGTCAATGGGTACAGTGCCAGTGACACAGTAGGAGCGGGGTTTGCACAGg gtctctgcccctagaatcctgagccaccatgtcattgtcactttccaaagGCAGGCCTGGCCTCTCCTGAGAACGCTGAACAGCTAATCATCACCCTTAAGCACAAGGCCGCCTCCATCTACTGCCGAAAGCTTCGGCTCCACCAGATGATTGAACTTAGCAGCAAGGCTGTGGTCAATGGGTATAGCAAAAGTGACACAGTAGGAGTGGAGTTTGCACAGggtaagggtttacacccttcttccctcgctcgttcagcctccttggtcaat Alignment from Spaln_aa2Genome GCAGGCCTGGCCTCCCCCGAGAACTCGGAGCAGCTCATCATTGCCCTGGAGCCCGAGGCCGCCTCCATCTACTGCCGGAAGCTTCGGCTGCACCAGATGATTGAGCTCAGCAGCAAGGCGGTGGTCAATGGGTACAGTGCCAGTGACACAGTAGGAGCGGGGTTTGCACAGG gtctctgcccctagaatcctgagccaccatgtcattgtcactttccaaagGCAGGCCTGGCCTCTCCTGAGAACGCTGAACAGCTAATCATCACCCTTAAGCACAAGGCCGCCTCCATCTACTGCCGAAAGCTTCGGCTCCACCAGATGATTGAACTTAGCAGCAAGGCTGTGGTCAATGGGTATAGCAAAAGTGACACAGTAGGAGTGGAGTTTGCACAGGgtaagggtttacacccttcttccctcgctcgttcagcctccttggtcaat Alignment from Spaln_nt2Genome GCAGGCCTGGCCTCCCCCGAGAACTCGGAGCAGCTCATCATTGCCCTGGAGCCCGAGGCCGCCTCCATCTACTGCCGGAAGCTTCGGCTGCACCAGATGATTGAGCTCAGCAGCAAGGCGGTGGTCAATGGGTACAGTGCCAGTGACACAGTAGGAGCGGGGTTTGCACAGG gtctctgcccctagaatcctgagccaccatgtcattgtcactttccaaagGCAGGCCTGGCCTCTCCTGAGAACGCTGAACAGCTAATCATCACCCTTAAGCACAAGGCCGCCTCCATCTACTGCCGAAAGCTTCGGCTCCACCAGATGATTGAACTTAGCAGCAAGGCTGTGGTCAATGGGTATAGCAAAAGTGACACAGTAGGAGTGGAGTTTGCACAGGgtaagggtttacacccttcttccctcgctcgttcagcctccttggtcaat Alignment from Pairagon GCAGGCCTGGCCTCCCCCGAGAACTCGGAGCAGCTCATCATTGCCCTGGAGCCCGAGGCCGCCTCCATCTACTGCCGGAAGCTTCGGCTGCACCAGATGATTGAGCTCAGCAGCAAGGCGGTGGTCAATGGGTACAGTGCCAGTGACACAGTAGGAGCGGGGTTTGCACAGG gtctctgcccctagaatcctgagccaccatgtcattgtcactttccaaagGCAGGCCTGGCCTCTCCTGAGAACGCTGAACAGCTAATCATCACCCTTAAGCACAAGGCCGCCTCCATCTACTGCCGAAAGCTTCGGCTCCACCAGATGATTGAACTTAGCAGCAAGGCTGTGGTCAATGGGTATAGCAAAAGTGACACAGTAGGAGTGGAGTTTGCACAGGgtaagggtttacacccttcttccctcgctcgttcagcctccttggtcaat Alignment from Exonerate_protein2genome GCAGGCCTGGCCTCCCCCGAGAACTCGGAGCAGCTCATCATTGCCCTGGAGCCCGAGGCCGCCTCCATCTACTGCCGGAAGCTTCGGCTGCACCAGATGATTGAGCTCAGCAGCAAGGCGGTGGTCAATGGGTACAGTGCCAGTGACACAGTAGGAGCGGGGTTTGCACAGG gtctctgcccctagaatcctgagccaccatgtcattgtcactttccaaagGCAGGCCTGGCCTCTCCTGAGAACGCTGAACAGCTAATCATCACCCTTAAGCACAAGGCCGCCTCCATCTACTGCCGAAAGCTTCGGCTCCACCAGATGATTGAACTTAGCAGCAAGGCTGTGGTCAATGGGTATAGCAAAAGTGACACAGTAGGAGTGGAGTTTGCACAGGgtaagggtttacacccttcttccctcgctcgttcagcctccttggtcaat Alignment from Exonerate_coding2genome GCAGGCCTGGCCTCCCCCGAGAACTCGGAGCAGCTCATCATTGCCCTGGAGCCCGAGGCCGCCTCCATCTACTGCCGGAAGCTTCGGCTGCACCAGATGATTGAGCTCAGCAGCAAGGCGGTGGTCAATGGGTACAGTGCCAGTGACACAGTAGGAGCGGGGTTTGCACAGG gtctctgcccctagaatcctgagccaccatgtcattgtcactttccaaagGCAGGCCTGGCCTCTCCTGAGAACGCTGAACAGCTAATCATCACCCTTAAGCACAAGGCCGCCTCCATCTACTGCCGAAAGCTTCGGCTCCACCAGATGATTGAACTTAGCAGCAAGGCTGTGGTCAATGGGTATAGCAAAAGTGACACAGTAGGAGTGGAGTTTGCACAGGgtaagggtttacacccttcttccctcgctcgttcagcctccttggtcaat Alignment from GeneWise GCAGGCCTGGCCTCCCCCGAGAACTCGGAGCAGCTCATCATTGCCCTGGAGCCCGAGGCCGCCTCCATCTACTGCCGGAAGCTTCGGCTGCACCAGATGATTGAGCTCAGCAGCAAGGCGGTGGTCAATGGGTACAGTGCCAGTGACACAGTAGGAGCGGGGTTTGCACAGG gtctctgcccctagaatcctgagccaccatgtcattgtcactttccaaagGCAGGCCTGGCCTCTCCTGAGAACGCTGAACAGCTAATCATCACCCTTAAGCACAAGGCCGCCTCCATCTACTGCCGAAAGCTTCGGCTCCACCAGATGATTGAACTTAGCAGCAAGGCTGTGGTCAATGGGTATAGCAAAAGTGACACAGTAGGAGTGGAGTTTGCACAGGgtaagggtttacacccttcttccctcgctcgttcagcctccttggtcaat #### Htr7_ID7073_2 --> 1 - 2 Original Alignment gTACCTTGGGATCACCAGGCCCCTCACGTACCCCGTGAGGCAGAATGGGAAATGTATGGCCAAAATGATTCTGTCGGTCTGGCTTCTCTCTGCCTCCATCACCTTACCTCCTCTCTTCGGATGGGCTCAGAATGTGAACGATGACAAAGTGTGCTTGATCAGCCAGGAT---------------------TTTGGCTACACGATCTACTCCACCGCAGTGGCGTTTTATATCCCCATGTCGGTCATGCTGTTCATGTACTATCAGATTTACAAGGCCGCCAGGAAGAGCGCAGCCAAACACAAGTTCTCAGGCTTCCCACGCGTGCAGCCGGAGAGCGTCATCTCCCTGAATGGCGTGGTGAAACTCCAGAAGGAGGTGGAAGAGTGTGCGAACCTTTCGAGACTGCTCAAACACGAAAGGAAAAACATTTCCATCTTCAAGAGGGAACAGAAAGCAGCCACTACCTTGGGGATCATCGTGGGAGCCTTCACGGTGTGC------------TGGCTGCCGTTTTTCCTCTTGTCCACAGCAAGGCCCTTTATCTGTGGCACCTCCTGTAGCTGCATCCCGCTGTGGGTGGAGAGGACATGTCTGTGGCTGGGCTATGCAAACTCTCTCATTAACCCTTTTATATATGCCTTCTTCAACCGGGACCTGAGGACCACCTATCGT---AGCCTACTCCAGTGCCAGTACCGGAATATCAACCGGAAGCTCTCTGCTGCAGGCATGCACGAAGCCCTGAAACTTGCTGAGAGGCCTGAGAGAAGCGAGTTTGTGct ttaggagtgcccccccagtagattgaaggctctgtgcttctttgaaataggTACCTAGGGATCACCAGGCCTCTGATGCAGCCTGAAAGACAGAATAGAAAGTGTATG---------------------------ATCTCTGTTATAATCACCCTACCCCCTCTTATTGGGTGGGCATTGAATGTCAACGATTACAAAGTGTGTTTAATCAGCCAGGACTTTGGATTGATGATATACTCC------TACAAAATATACTCTACTGCATTAGCATTCCATATCCCAAAGCTAGTCATGTTGTTTATGTATTATCAT---TATAAAGCAGCCAAAAAGACCACAGCCAAGCATGAGTTCTCAGGGTTTCCACATGCACAGCCAGAAAGCATGATCTCCCTGAATGGTCTGGTGAAGCAGCAGAAAGAAGTGGAAGAATGTGCTAACCTTTCAAGACTGCTCAAACATGAAAGAAAGAATACTTCCATATTTAAGAGGCAACAGAAGGCAGCCACTAGCTTGGGAATCATCATTGGAACTTTCACAATATGCTGGCTACCCTTCTGGCTACCCTTTTTCTTCCTATCCACAGCACGGTCCTTGATATGTGGCACCTCCTAC---TGTATCCCATTGTGGGTAGAAAGGACATGTCTGTGGCTGGGCTATGCAAACCCACTCATAAACCCTTTTATACATGCTTTTTTCAACCAGGATTTAAGGACAATT---TACAGCAGCCTACTTCAGTGTCAGTATCGGAATATCAACCAGCCACTTTCAGCTGCAAGCATGCATGAAACACTTAAGCTAGCCGAGAGGCCTGAGAGGAGTGAATTTGTGctgtatgttcaatattgctactttccccctatacttttgtgacacttctgag Alignment from CESAR gTACCTTGGGATCACCAGGCCCCTCACGTACCCCGTGAGGCAGAATGGGAAATGTATGGCCAAAATGATTCTGTCGGTCTGGCTTCTCTCTGCCTCCATCACCTTACCTCCTCTCTTCGGATGGGCTCAGAATGTGAACGATGACAAAGTGTGCTTGATCAGCCAGGATTTTGGC---------------TACACGATCTACTCCACCGCAGTGGCGTTTTATATCCCCATGTCGGTCATGCTGTTCATGTACTATCAGATTTACAAGGCCGCCAGGAAGAGCGCAGCCAAACACAAGTTCTCAGGCTTCCCACGCGTGCAGCCGGAGAGCGTCATCTCCCTGAATGGCGTGGTGAAACTCCAGAAGGAGGTGGAAGAGTGTGCGAACCTTTCGAGACTGCTCAAACACGAAAGGAAAAACATTTCCATCTTCAAGAGGGAACAGAAAGCAGCCACTACCTTGGGGATCATCGTGGGAGCCTTCACGGTGTGC------------TGGCTGCCGTTTTTCCTCTTGTCCACAGCAAGGCCCTTTATCTGTGGCACCTCCTGTAGCTGCATCCCGCTGTGGGTGGAGAGGACATGTCTGTGGCTGGGCTATGCAAACTCTCTCATTAACCCTTTTATATATGCCTTCTTCAACCGGGACCTGAGGACCACCTATCGTAGCCTACTCCAGTGCCAGTACCGGAATATCAACCGGAAGCTCTCTGCTGCAGGCATGCACGAAGCCCTGAAACTTGCTGAGAGGCCTGAGAGAAGCGAGTTTGTGct ttaggagtgcccccccagtagattgaaggctctgtgcttctttgaaataggTACCTAGGGATCACCAGGCCTCTGATGCAGCCTGAAAGACAGAATAGAAAGTGTATG---------------------------ATCTCTGTTATAATCACCCTACCCCCTCTTATTGGGTGGGCATTGAATGTCAACGATTACAAAGTGTGTTTAATCAGCCAGGACTTTGGATTGATGATATACTCCTACAAAATATACTCTACTGCATTAGCATTCCATATCCCAAAGCTAGTCATGTTGTTTATGTATTATCAT---TATAAAGCAGCCAAAAAGACCACAGCCAAGCATGAGTTCTCAGGGTTTCCACATGCACAGCCAGAAAGCATGATCTCCCTGAATGGTCTGGTGAAGCAGCAGAAAGAAGTGGAAGAATGTGCTAACCTTTCAAGACTGCTCAAACATGAAAGAAAGAATACTTCCATATTTAAGAGGCAACAGAAGGCAGCCACTAGCTTGGGAATCATCATTGGAACTTTCACAATATGCTGGCTACCCTTCTGGCTACCCTTTTTCTTCCTATCCACAGCACGGTCCTTGATATGTGGCACCTCCTAC---TGTATCCCATTGTGGGTAGAAAGGACATGTCTGTGGCTGGGCTATGCAAACCCACTCATAAACCCTTTTATACATGCTTTTTTCAACCAGGATTTAAGGACAATTTACAGCAGCCTACTTCAGTGTCAGTATCGGAATATCAACCAGCCACTTTCAGCTGCAAGCATGCATGAAACACTTAAGCTAGCCGAGAGGCCTGAGAGGAGTGAATTTGTGctgtatgttcaatattgctactttccccctatacttttgtgacacttctgag Alignment from Spaln_aa2Genome GTACCTTGGGATCACCAGGCCCCTCACGTACCCCGTGAGGCAGAATGGGAAATGTATGGCCAAAATGATTCTGTCGGTCTGGCTTCTCTCTGCCTCCATCACCTTACCTCCTCTCTTCGGATGGGCTCAGAATGTGAACGATGACAAAGTGTGCTTGATCAGCCAGGATTTTGGC---------------TACACGATCTACTCCACCGCAGTGGCGTTTTATATCCCCATGTCGGTCATGCTGTTCATGTACTATCAGATTTACAAGGCCGCCAGGAAGAGCGCAGCCAAACACAAGTTCTCAGGCTTCCCACGCGTGCAGCCGGAGAGCGTCATCTCCCTGAATGGCGTGGTGAAACTCCAGAAGGAGGTGGAAGAGTGTGCGAACCTTTCGAGACTGCTCAAACACGAAAGGAAAAACATTTCCATCTTCAAGAGGGAACAGAAAGCAGCCACTACCTTGGGGATCATCGTGGGAGCCTTCACGGTGTGCTGG------------CTGCCGTTTTTCCTCTTGTCCACAGCAAGGCCCTTTATCTGTGGCACCTCCTGTAGCTGCATCCCGCTGTGGGTGGAGAGGACATGTCTGTGGCTGGGCTATGCAAACTCTCTCATTAACCCTTTTATATATGCCTTCTTCAACCGGGACCTGAGGACCACCTATCGTAGCCTACTCCAGTGCCAGTACCGGAATATCAACCGGAAGCTCTCTGCTGCAGGCATGCACGAAGCCCTGAAACTTGCTGAGAGGCCTGAGAGAAGCGAGTTTGTGCT ttaggagtgcccccccagtagattgaaggctctgtgcttctttgaaatagGTACCTAGGGATCACCAGGCCTCTGATGCAGCCTGAAAGACAGAATAGAAAGTGTATGATCTCTGTTATA---------------------------ATCACCCTACCCCCTCTTATTGGGTGGGCATTGAATGTCAACGATTACAAAGTGTGTTTAATCAGCCAGGACTTTGGATTGATGATATACTCCTACAAAATATACTCTACTGCATTAGCATTCCATATCCCAAAGCTAGTCATGTTGTTTATGTATTATCAT---TATAAAGCAGCCAAAAAGACCACAGCCAAGCATGAGTTCTCAGGGTTTCCACATGCACAGCCAGAAAGCATGATCTCCCTGAATGGTCTGGTGAAGCAGCAGAAAGAAGTGGAAGAATGTGCTAACCTTTCAAGACTGCTCAAACATGAAAGAAAGAATACTTCCATATTTAAGAGGCAACAGAAGGCAGCCACTAGCTTGGGAATCATCATTGGAACTTTCACAATATGCTGGCTACCCTTCTGGCTACCCTTTTTCTTCCTATCCACAGCACGGTCCTTGATATGTGGCACCTCCTAC---TGTATCCCATTGTGGGTAGAAAGGACATGTCTGTGGCTGGGCTATGCAAACCCACTCATAAACCCTTTTATACATGCTTTTTTCAACCAGGATTTAAGGACAATTTACAGCAGCCTACTTCAGTGTCAGTATCGGAATATCAACCAGCCACTTTCAGCTGCAAGCATGCATGAAACACTTAAGCTAGCCGAGAGGCCTGAGAGGAGTGAATTTGTGCTgtatgttcaatattgctactttccccctatacttttgtgacacttctgag Alignment from Spaln_nt2Genome GTACCTTGGGATCACCAGGCCCCTCACGTACCCCGTGAGGCAGAATGGGAAATGTATGGCCAAAATGATTCTGTCGGTCTGGCTTCTCTCTGCCTCCATCACCTTACCTCCTCTCTTCGGATGGGCTCAGAATGTGAACGATGACAAAGTGTGCTTGATCAGCCAGGATTTTGG---------------CTACACGATCTACTCCACCGCAGTGGCGTTTTATATCCCCATGTCGGTCATGCTGTTCATGTACTATCAGATTTACAAGGCCGCCAGGAAGAGCGCAGCCAAACACAAGTTCTCAGGCTTCCCACGCGTGCAGCCGGAGAGCGTCATCTCCCTGAATGGCGTGGTGAAACTCCAGAAGGAGGTGGAAGAGTGTGCGAACCTTTCGAGACTGCTCAAACACGAAAGGAAAAACATTTCCATCTTCAAGAGGGAACAGAAAGCAGCCACTACCTTGGGGATCATCGTGGGAGCCTTCACGGTGTGCTGGCTGCCGTT------------TTTCCTCTTGTCCACAGCAAGGCCCTTTATCTGTGGCACCTCCTGTAGCTGCATCCCGCTGTGGGTGGAGAGGACATGTCTGTGGCTGGGCTATGCAAACTCTCTCATTAACCCTTTTATATATGCCTTCTTCAACCGGGACCTGAGGACCACCTATCGTAGCCTACTCCAGTGCCAGTACCGGAATATCAACCGGAAGCTCTCTGCTGCAGGCATGCACGAAGCCCTGAAACTTGCTGAGAGGCCTGAGAGAAGCGAGTTTGTGCT ttaggagtgcccccccagtagattgaaggctctgtgcttctttgaaatagGTACCTAGGGATCACCAGGCCTCTGATGCAGCCTGAAAGACAGAATAGAAAGTGTATG---------------------------ATCTCTGTTATAATCACCCTACCCCCTCTTATTGGGTGGGCATTGAATGTCAACGATTACAAAGTGTGTTTAATCAGCCAGGACTTTGGATTGATGATATACTCCTACAAAATATACTCTACTGCATTAGCATTCCATATCCCAAAGCTAGTCATGTTGTTTATGTATTATCA---TTATAAAGCAGCCAAAAAGACCACAGCCAAGCATGAGTTCTCAGGGTTTCCACATGCACAGCCAGAAAGCATGATCTCCCTGAATGGTCTGGTGAAGCAGCAGAAAGAAGTGGAAGAATGTGCTAACCTTTCAAGACTGCTCAAACATGAAAGAAAGAATACTTCCATATTTAAGAGGCAACAGAAGGCAGCCACTAGCTTGGGAATCATCATTGGAACTTTCACAATATGCTGGCTACCCTTCTGGCTACCCTTTTTCTTCCTATCCACAGCACGGTCCTTGATATGTGGCACCTCCT---ACTGTATCCCATTGTGGGTAGAAAGGACATGTCTGTGGCTGGGCTATGCAAACCCACTCATAAACCCTTTTATACATGCTTTTTTCAACCAGGATTTAAGGACAATTTACAGCAGCCTACTTCAGTGTCAGTATCGGAATATCAACCAGCCACTTTCAGCTGCAAGCATGCATGAAACACTTAAGCTAGCCGAGAGGCCTGAGAGGAGTGAATTTGTGCTgtatgttcaatattgctactttccccctatacttttgtgacacttctgag Alignment from Pairagon GTACCTTGGGATCACCAGGCCCCTCACGTACCCCGTGAGGCAGAATGGGAAATGTATGGCCAAAATGATTCTGTCGGTCTGGCTTCTCTCTGCCTCCATCACCTTACCTCCTCTCTTCGGATGGGCTCAGAATGTGAACGATGACAAAGTGTGCTTGATCAGCCAGGATTTTGG---------------CTACACGATCTACTCCACCGCAGTGGCGTTTTATATCCCCATGTCGGTCATGCTGTTCATGTACTATCAGATTTACAAGGCCGCCAGGAAGAGCGCAGCCAAACACAAGTTCTCAGGCTTCCCACGCGTGCAGCCGGAGAGCGTCATCTCCCTGAATGGCGTGGTGAAACTCCAGAAGGAGGTGGAAGAGTGTGCGAACCTTTCGAGACTGCTCAAACACGAAAGGAAAAACATTTCCATCTTCAAGAGGGAACAGAAAGCAGCCACTACCTTGGGGATCATCGTGGGAGCCTTCACGGTGTG------------CTGGCTGCCGTTTTTCCTCTTGTCCACAGCAAGGCCCTTTATCTGTGGCACCTCCTGTAGCTGCATCCCGCTGTGGGTGGAGAGGACATGTCTGTGGCTGGGCTATGCAAACTCTCTCATTAACCCTTTTATATATGCCTTCTTCAACCGGGACCTGAGGACCACCTATCGTAGCCTACTCCAGTGCCAGTACCGGAATATCAACCGGAAGCTCTCTGCTGCAGGCATGCACGAAGCCCTGAAACTTGCTGAGAGGCCTGAGAGAAGCGAGTTTGTGCT ttaggagtgcccccccagtagattgaaggctctgtgcttctttgaaatagGTACCTAGGGATCACCAGGCCTCTGATGCAGCCTGAAAGACAGAATAGAAAGTGTATGA---------------------------TCTCTGTTATAATCACCCTACCCCCTCTTATTGGGTGGGCATTGAATGTCAACGATTACAAAGTGTGTTTAATCAGCCAGGACTTTGGATTGATGATATACTCCTACAAAATATACTCTACTGCATTAGCATTCCATATCCCAAAGCTAGTCATGTTGTTTATGTATTATCA---TTATAAAGCAGCCAAAAAGACCACAGCCAAGCATGAGTTCTCAGGGTTTCCACATGCACAGCCAGAAAGCATGATCTCCCTGAATGGTCTGGTGAAGCAGCAGAAAGAAGTGGAAGAATGTGCTAACCTTTCAAGACTGCTCAAACATGAAAGAAAGAATACTTCCATATTTAAGAGGCAACAGAAGGCAGCCACTAGCTTGGGAATCATCATTGGAACTTTCACAATATGCTGGCTACCCTTCTGGCTACCCTTTTTCTTCCTATCCACAGCACGGTCCTTGATATGTGGCACCTCCT---ACTGTATCCCATTGTGGGTAGAAAGGACATGTCTGTGGCTGGGCTATGCAAACCCACTCATAAACCCTTTTATACATGCTTTTTTCAACCAGGATTTAAGGACAATTTACAGCAGCCTACTTCAGTGTCAGTATCGGAATATCAACCAGCCACTTTCAGCTGCAAGCATGCATGAAACACTTAAGCTAGCCGAGAGGCCTGAGAGGAGTGAATTTGTGCTgtatgttcaatattgctactttccccctatacttttgtgacacttctgag Alignment from Exonerate_protein2genome TCACCTTACCTCCTCTCTTCGGATGGGCTCAGAATGTGAACGATGACAAAGTGTGCTTGATCAGCCAGGATTTTGGC---------------TACACGATCTACTCCACCGCAGTGGCGTTTTATATCCCCATGTCGGTCATGCTGTTCATGTACTATCAGATTTACAAGGCCGCCAGGAAGAGCGCAGCCAAACACAAGTTCTCAGGCTTCCCACGCGTGCAGCCGGAGAGCGTCATCTCCCTGAATGGCGTGGTGAAACTCCAGAAGGAGGTGGAAGAGTGTGCGAACCTTTCGAGACTGCTCAAACACGAAAGGAAAAACATTTCCATCTTCAAGAGGGAACAGAAAGCAGCCACTACCTTGGGGATCATCGTGGGAGCCTTCACGGTGTGC------------TGGCTGCCGTTTTTCCTCTTGTCCACAGCAAGGCCCTTTATCTGTGGCACCTCCTGTAGCTGCATCCCGCTGTGGGTGGAGAGGACATGTCTGTGGCTGGGCTATGCAAACTCTCTCATTAACCCTTTTATATATGCCTTCTTCAACCGGGACCTGAGGACCACCTATCGTAGCCTACTCCAGTGCCAGTACCGGAATATCAACCGGAAGCTCTCTGCTGCAGGCATGCACGAAGCCCTGAAACTTGCTGAGAGGCCTGAGAGAAGCGAGTTTGTGCT ttaggagtgcccccccagtagattgaaggctctgtgcttctttgaaataggtacctagggatcaccaggcctctgatgcagcctgaaagacagaatagaaagtgtatgatctctgttataaTCACCCTACCCCCTCTTATTGGGTGGGCATTGAATGTCAACGATTACAAAGTGTGTTTAATCAGCCAGGACTTTGGATTGATGATATACTCCTACAAAATATACTCTACTGCATTAGCATTCCATATCCCAAAGCTAGTCATGTTGTTTATGTATTATCAT---TATAAAGCAGCCAAAAAGACCACAGCCAAGCATGAGTTCTCAGGGTTTCCACATGCACAGCCAGAAAGCATGATCTCCCTGAATGGTCTGGTGAAGCAGCAGAAAGAAGTGGAAGAATGTGCTAACCTTTCAAGACTGCTCAAACATGAAAGAAAGAATACTTCCATATTTAAGAGGCAACAGAAGGCAGCCACTAGCTTGGGAATCATCATTGGAACTTTCACAATATGCTGGCTACCCTTCTGGCTACCCTTTTTCTTCCTATCCACAGCACGGTCCTTGATATGTGGCACCTCC---TACTGTATCCCATTGTGGGTAGAAAGGACATGTCTGTGGCTGGGCTATGCAAACCCACTCATAAACCCTTTTATACATGCTTTTTTCAACCAGGATTTAAGGACAATTTACAGCAGCCTACTTCAGTGTCAGTATCGGAATATCAACCAGCCACTTTCAGCTGCAAGCATGCATGAAACACTTAAGCTAGCCGAGAGGCCTGAGAGGAGTGAATTTGTGCTgtatgttcaatattgctactttccccctatacttttgtgacacttctgag Alignment from Exonerate_coding2genome CTTCTCTCTGCCTCCATCACCTTACCTCCTCTCTTCGGATGGGCTCAGAATGTGAACGATGACAAAGTGTGCTTGATCAGCCAGGATTTTGGC---------------TACACGATCTACTCCACCGCAGTGGCGTTTTATATCCCCATGTCGGTCATGCTGTTCATGTACTATCAGATTTACAAGGCCGCCAGGAAGAGCGCAGCCAAACACAAGTTCTCAGGCTTCCCACGCGTGCAGCCGGAGAGCGTCATCTCCCTGAATGGCGTGGTGAAACTCCAGAAGGAGGTGGAAGAGTGTGCGAACCTTTCGAGACTGCTCAAACACGAAAGGAAAAACATTTCCATCTTCAAGAGGGAACAGAAAGCAGCCACTACCTTGGGGATCATCGTGGGAGCCTTCACGGTGTGC------------TGGCTGCCGTTTTTCCTCTTGTCCACAGCAAGGCCCTTTATCTGTGGCACCTCCTGTAGCTGCATCCCGCTGTGGGTGGAGAGGACATGTCTGTGGCTGGGCTATGCAAACTCTCTCATTAACCCTTTTATATATGCCTTCTTCAACCGGGACCTGAGGACCACCTATCGTAGCCTACTCCAGTGCCAGTACCGGAATATCAACCGGAAGCTCTCTGCTGCAGGCATGCACGAAGCCCTGAAACTTGCTGAGAGGCCTGAGAGAAGCGAGTTTGTGCT ttaggagtgcccccccagtagattgaaggctctgtgcttctttgaaataggtacctagggatcaccaggcctctgatgcagcctgaaagacagaatagaaagtgtATGATCTCTGTTATAATCACCCTACCCCCTCTTATTGGGTGGGCATTGAATGTCAACGATTACAAAGTGTGTTTAATCAGCCAGGACTTTGGATTGATGATATACTCCTACAAAATATACTCTACTGCATTAGCATTCCATATCCCAAAGCTAGTCATGTTGTTTATGTATTATCAT---TATAAAGCAGCCAAAAAGACCACAGCCAAGCATGAGTTCTCAGGGTTTCCACATGCACAGCCAGAAAGCATGATCTCCCTGAATGGTCTGGTGAAGCAGCAGAAAGAAGTGGAAGAATGTGCTAACCTTTCAAGACTGCTCAAACATGAAAGAAAGAATACTTCCATATTTAAGAGGCAACAGAAGGCAGCCACTAGCTTGGGAATCATCATTGGAACTTTCACAATATGCTGGCTACCCTTCTGGCTACCCTTTTTCTTCCTATCCACAGCACGGTCCTTGATATGTGGCACCTCC---TACTGTATCCCATTGTGGGTAGAAAGGACATGTCTGTGGCTGGGCTATGCAAACCCACTCATAAACCCTTTTATACATGCTTTTTTCAACCAGGATTTAAGGACAATTTACAGCAGCCTACTTCAGTGTCAGTATCGGAATATCAACCAGCCACTTTCAGCTGCAAGCATGCATGAAACACTTAAGCTAGCCGAGAGGCCTGAGAGGAGTGAATTTGTGCTgtatgttcaatattgctactttccccctatacttttgtgacacttctgag Alignment from GeneWise GTACCTTGGGATCACCAGGCCCCTCACGTACCCCGTGAGGCAGAATGGGAAATGTATGGCCAAAATGATTCTGTCGGTCTGGCTTCTCTCTGCCTCCATCACCTTACCTCCTCTCTTCGGATGGGCTCAGAATGTGAACGATGACAAAGTGTGCTTGATCAGCCAGGATTTTGGC---------------TACACGATCTACTCCACCGCAGTGGCGTTTTATATCCCCATGTCGGTCATGCTGTTCATGTACTATCAGATTTACAAGGCCGCCAGGAAGAGCGCAGCCAAACACAAGTTCTCAGGCTTCCCACGCGTGCAGCCGGAGAGCGTCATCTCCCTGAATGGCGTGGTGAAACTCCAGAAGGAGGTGGAAGAGTGTGCGAACCTTTCGAGACTGCTCAAACACGAAAGGAAAAACATTTCCATCTTCAAGAGGGAACAGAAAGCAGCCACTACCTTGGGGATCATCGTGGGAGCCTTCACGGTGTGC------------TGGCTGCCGTTTTTCCTCTTGTCCACAGCAAGGCCCTTTATCTGTGGCACCTCCTGTAGCTGCATCCCGCTGTGGGTGGAGAGGACATGTCTGTGGCTGGGCTATGCAAACTCTCTCATTAACCCTTTTATATATGCCTTCTTCAACCGGGACCTGAGGACCACCTATCGTAGCCTACTCCAGTGCCAGTACCGGAATATCAACCGGAAGCTCTCTGCTGCAGGCATGCACGAAGCCCTGAAACTTGCTGAGAGGCCTGAGAGAAGCGAGTTTGTGCT ttaggagtgcccccccagtagattgaaggctctgtgcttctttgaaatagGTACCTAGGGATCACCAGGCCTCTGATGCAGCCTGAAAGACAGAATAGAAAGTGTATGATCTCTGTTATA---------------------------ATCACCCTACCCCCTCTTATTGGGTGGGCATTGAATGTCAACGATTACAAAGTGTGTTTAATCAGCCAGGACTTTGGATTGATGATATACTCCTACAAAATATACTCTACTGCATTAGCATTCCATATCCCAAAGCTAGTCATGTTGTTTATGTATTATCAT---TATAAAGCAGCCAAAAAGACCACAGCCAAGCATGAGTTCTCAGGGTTTCCACATGCACAGCCAGAAAGCATGATCTCCCTGAATGGTCTGGTGAAGCAGCAGAAAGAAGTGGAAGAATGTGCTAACCTTTCAAGACTGCTCAAACATGAAAGAAAGAATACTTCCATATTTAAGAGGCAACAGAAGGCAGCCACTAGCTTGGGAATCATCATTGGAACTTTCACAATATGCTGGCTACCCTTCTGGCTACCCTTTTTCTTCCTATCCACAGCACGGTCCTTGATATGTGGCACCTCC---TACTGTATCCCATTGTGGGTAGAAAGGACATGTCTGTGGCTGGGCTATGCAAACCCACTCATAAACCCTTTTATACATGCTTTTTTCAACCAGGATTTAAGGACAATTTACAGCAGCCTACTTCAGTGTCAGTATCGGAATATCAACCAGCCACTTTCAGCTGCAAGCATGCATGAAACACTTAAGCTAGCCGAGAGGCCTGAGAGGAGTGAATTTGTGCTgtatgttcaatattgctactttccccctatacttttgtgacacttctgag #### Incenp_ID2610_9 --> 0 - 0 Original Alignment GTGGTACGGCCCCTCCGGACTTTCCTGCACACAGTGCAGAAGAACCAGATGCTCATGACCCCCACACTGGCCTCCCGCAGCAGTGTCATGAAGTCCTTTATTAAACGCAACACTCCGCTTCGTGTGGACCCTAAG tttgcattctgtccaagcccctccatcatttctcaactcttactcaccagGTTGTACACCCCCTGCAGACTTTCTTCCACAAGGTACAAAAGAATCAGATGCTCATGACCCCCACTCTTACCGCCCGGAGTAGTGTTATGAAATCCTTTATTAAACGCAATACTCCTCTTCGGGTAGACCTCAAGgtgggtatgtttgtctctcaccccaacttgctgacactaaatgtggcgtt Alignment from CESAR GTGGTACGGCCCCTCCGGACTTTCCTGCACACAGTGCAGAAGAACCAGATGCTCATGACCCCCACACTGGCCTCCCGCAGCAGTGTCATGAAGTCCTTTATTAAACGCAACACTCCGCTTCGTGTGGACCCTAAG tttgcattctgtccaagcccctccatcatttctcaactcttactcaccagGTTGTACACCCCCTGCAGACTTTCTTCCACAAGGTACAAAAGAATCAGATGCTCATGACCCCCACTCTTACCGCCCGGAGTAGTGTTATGAAATCCTTTATTAAACGCAATACTCCTCTTCGGGTAGACCTCAAGgtgggtatgtttgtctctcaccccaacttgctgacactaaatgtggcgtt Alignment from Spaln_aa2Genome GTGGTACGGCCCCTCCGGACTTTCCTGCACACAGTGCAGAAGAACCAGATGCTCATGACCCCCACACTGGCCTCCCGCAGCAGTGTCATGAAGTCCTTTATTAAACGCAACACTCCGCTTCGTGTGGACCCTAAG tttgcattctgtccaagcccctccatcatttctcaactcttactcaccagGTTGTACACCCCCTGCAGACTTTCTTCCACAAGGTACAAAAGAATCAGATGCTCATGACCCCCACTCTTACCGCCCGGAGTAGTGTTATGAAATCCTTTATTAAACGCAATACTCCTCTTCGGGTAGACCTCAAGgtgggtatgtttgtctctcaccccaacttgctgacactaaatgtggcgtt Alignment from Spaln_nt2Genome GTGGTACGGCCCCTCCGGACTTTCCTGCACACAGTGCAGAAGAACCAGATGCTCATGACCCCCACACTGGCCTCCCGCAGCAGTGTCATGAAGTCCTTTATTAAACGCAACACTCCGCTTCGTGTGGACCCTAAG tttgcattctgtccaagcccctccatcatttctcaactcttactcaccagGTTGTACACCCCCTGCAGACTTTCTTCCACAAGGTACAAAAGAATCAGATGCTCATGACCCCCACTCTTACCGCCCGGAGTAGTGTTATGAAATCCTTTATTAAACGCAATACTCCTCTTCGGGTAGACCTCAAGgtgggtatgtttgtctctcaccccaacttgctgacactaaatgtggcgtt Alignment from Pairagon GTGGTACGGCCCCTCCGGACTTTCCTGCACACAGTGCAGAAGAACCAGATGCTCATGACCCCCACACTGGCCTCCCGCAGCAGTGTCATGAAGTCCTTTATTAAACGCAACACTCCGCTTCGTGTGGACCCTAAG tttgcattctgtccaagcccctccatcatttctcaactcttactcaccagGTTGTACACCCCCTGCAGACTTTCTTCCACAAGGTACAAAAGAATCAGATGCTCATGACCCCCACTCTTACCGCCCGGAGTAGTGTTATGAAATCCTTTATTAAACGCAATACTCCTCTTCGGGTAGACCTCAAGgtgggtatgtttgtctctcaccccaacttgctgacactaaatgtggcgtt Alignment from Exonerate_protein2genome GTGGTACGGCCCCTCCGGACTTTCCTGCACACAGTGCAGAAGAACCAGATGCTCATGACCCCCACACTGGCCTCCCGCAGCAGTGTCATGAAGTCCTTTATTAAACGCAACACTCCGCTTCGTGTGGACCCTAAG tttgcattctgtccaagcccctccatcatttctcaactcttactcaccagGTTGTACACCCCCTGCAGACTTTCTTCCACAAGGTACAAAAGAATCAGATGCTCATGACCCCCACTCTTACCGCCCGGAGTAGTGTTATGAAATCCTTTATTAAACGCAATACTCCTCTTCGGGTAGACCTCAAGgtgggtatgtttgtctctcaccccaacttgctgacactaaatgtggcgtt Alignment from Exonerate_coding2genome GTGGTACGGCCCCTCCGGACTTTCCTGCACACAGTGCAGAAGAACCAGATGCTCATGACCCCCACACTGGCCTCCCGCAGCAGTGTCATGAAGTCCTTTATTAAACGCAACACTCCGCTTCGTGTGGACCCTAAG tttgcattctgtccaagcccctccatcatttctcaactcttactcaccagGTTGTACACCCCCTGCAGACTTTCTTCCACAAGGTACAAAAGAATCAGATGCTCATGACCCCCACTCTTACCGCCCGGAGTAGTGTTATGAAATCCTTTATTAAACGCAATACTCCTCTTCGGGTAGACCTCAAGgtgggtatgtttgtctctcaccccaacttgctgacactaaatgtggcgtt Alignment from GeneWise GTGGTACGGCCCCTCCGGACTTTCCTGCACACAGTGCAGAAGAACCAGATGCTCATGACCCCCACACTGGCCTCCCGCAGCAGTGTCATGAAGTCCTTTATTAAACGCAACACTCCGCTTCGTGTGGACCCTAAG tttgcattctgtccaagcccctccatcatttctcaactcttactcaccagGTTGTACACCCCCTGCAGACTTTCTTCCACAAGGTACAAAAGAATCAGATGCTCATGACCCCCACTCTTACCGCCCGGAGTAGTGTTATGAAATCCTTTATTAAACGCAATACTCCTCTTCGGGTAGACCTCAAGgtgggtatgtttgtctctcaccccaacttgctgacactaaatgtggcgtt #### Incenp_ID2613_6 --> 0 - 1 Original Alignment GTCTCCAAGAACAGTGGGTGTCCCTCCAAACCCCGCAGTGCCACCAAGATTGCGATTAGTACGCCCACCTCGAAGCCTGCGGCCGCTGGTCAGACAACAACTGTTGAAGAGCAAg ggaagttgtgtacccaattacttaacttaacatctttctcttgctcgcagATCTCTGAAAACAGTGGGTCTCCCTCCAAGCCCCACAGTGCCACAAAGGTAGCGATCAGTACACCCATTTCAAAGCCTGCAGCTGCTGGCCATACAACAGCTGTTGAAGAGCAAggtgagcagccacaatgcgtggttcattgggttgggagaggttaacgtgcg Alignment from CESAR GTCTCCAAGAACAGTGGGTGTCCCTCCAAACCCCGCAGTGCCACCAAGATTGCGATTAGTACGCCCACCTCGAAGCCTGCGGCCGCTGGTCAGACAACAACTGTTGAAGAGCAAg ggaagttgtgtacccaattacttaacttaacatctttctcttgctcgcagATCTCTGAAAACAGTGGGTCTCCCTCCAAGCCCCACAGTGCCACAAAGGTAGCGATCAGTACACCCATTTCAAAGCCTGCAGCTGCTGGCCATACAACAGCTGTTGAAGAGCAAggtgagcagccacaatgcgtggttcattgggttgggagaggttaacgtgcg Alignment from Spaln_aa2Genome GTCTCCAAGAACAGTGGGTGTCCCTCCAAACCCCGCAGTGCCACCAAGATTGCGATTAGTACGCCCACCTCGAAGCCTGCGGCCGCTGGTCAGACAACAACTGTTGAAGAGCAAG ggaagttgtgtacccaattacttaacttaacatctttctcttgctcgcagATCTCTGAAAACAGTGGGTCTCCCTCCAAGCCCCACAGTGCCACAAAGGTAGCGATCAGTACACCCATTTCAAAGCCTGCAGCTGCTGGCCATACAACAGCTGTTGAAGAGCAAGgtgagcagccacaatgcgtggttcattgggttgggagaggttaacgtgcg Alignment from Spaln_nt2Genome GTCTCCAAGAACAGTGGGTGTCCCTCCAAACCCCGCAGTGCCACCAAGATTGCGATTAGTACGCCCACCTCGAAGCCTGCGGCCGCTGGTCAGACAACAACTGTTGAAGAGCAAG ggaagttgtgtacccaattacttaacttaacatctttctcttgctcgcagATCTCTGAAAACAGTGGGTCTCCCTCCAAGCCCCACAGTGCCACAAAGGTAGCGATCAGTACACCCATTTCAAAGCCTGCAGCTGCTGGCCATACAACAGCTGTTGAAGAGCAAGgtgagcagccacaatgcgtggttcattgggttgggagaggttaacgtgcg Alignment from Pairagon GTCTCCAAGAACAGTGGGTGTCCCTCCAAACCCCGCAGTGCCACCAAGATTGCGATTAGTACGCCCACCTCGAAGCCTGCGGCCGCTGGTCAGACAACAACTGTTGAAGAGCAAG ggaagttgtgtacccaattacttaacttaacatctttctcttgctcgcagATCTCTGAAAACAGTGGGTCTCCCTCCAAGCCCCACAGTGCCACAAAGGTAGCGATCAGTACACCCATTTCAAAGCCTGCAGCTGCTGGCCATACAACAGCTGTTGAAGAGCAAGgtgagcagccacaatgcgtggttcattgggttgggagaggttaacgtgcg Alignment from Exonerate_protein2genome GTCTCCAAGAACAGTGGGTGTCCCTCCAAACCCCGCAGTGCCACCAAGATTGCGATTAGTACGCCCACCTCGAAGCCTGCGGCCGCTGGTCAGACAACAACTGTTGAAGAGCAAG ggaagttgtgtacccaattacttaacttaacatctttctcttgctcgcagATCTCTGAAAACAGTGGGTCTCCCTCCAAGCCCCACAGTGCCACAAAGGTAGCGATCAGTACACCCATTTCAAAGCCTGCAGCTGCTGGCCATACAACAGCTGTTGAAGAGCAAGgtgagcagccacaatgcgtggttcattgggttgggagaggttaacgtgcg Alignment from Exonerate_coding2genome GTCTCCAAGAACAGTGGGTGTCCCTCCAAACCCCGCAGTGCCACCAAGATTGCGATTAGTACGCCCACCTCGAAGCCTGCGGCCGCTGGTCAGACAACAACTGTTGAAGAGCAAG ggaagttgtgtacccaattacttaacttaacatctttctcttgctcgcagATCTCTGAAAACAGTGGGTCTCCCTCCAAGCCCCACAGTGCCACAAAGGTAGCGATCAGTACACCCATTTCAAAGCCTGCAGCTGCTGGCCATACAACAGCTGTTGAAGAGCAAGgtgagcagccacaatgcgtggttcattgggttgggagaggttaacgtgcg Alignment from GeneWise GTCTCCAAGAACAGTGGGTGTCCCTCCAAACCCCGCAGTGCCACCAAGATTGCGATTAGTACGCCCACCTCGAAGCCTGCGGCCGCTGGTCAGACAACAACTGTTGAAGAGCAAG ggaagttgtgtacccaattacttaacttaacatctttctcttgctcgcagATCTCTGAAAACAGTGGGTCTCCCTCCAAGCCCCACAGTGCCACAAAGGTAGCGATCAGTACACCCATTTCAAAGCCTGCAGCTGCTGGCCATACAACAGCTGTTGAAGAGCAAGgtgagcagccacaatgcgtggttcattgggttgggagaggttaacgtgcg #### Incenp_ID2614_5 --> 1 - 0 Original Alignment cCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG tggagcctctttctaccatgaagatatacttctttactatggttgcacagcCTGGAGCAGGAGCCGGTTGAGGTTACTGAGCCTGAAGATACAGAAGAGGAGCAAGAGgtgagcgtgctcctgggccaactcttactcccctcagcttatggggcagt Alignment from CESAR cCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG tggagcctctttctaccatgaagatatacttctttactatggttgcacagcCTGGAGCAGGAGCCGGTTGAGGTTACTGAGCCTGAAGATACAGAAGAGGAGCAAGAGgtgagcgtgctcctgggccaactcttactcccctcagcttatggggcagt Alignment from Spaln_aa2Genome CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG tggagcctctttctaccatgaagatatacttctttactatggttgcacagCCTGGAGCAGGAGCCGGTTGAGGTTACTGAGCCTGAAGATACAGAAGAGGAGCAAGAGgtgagcgtgctcctgggccaactcttactcccctcagcttatggggcagt Alignment from Spaln_nt2Genome CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG tggagcctctttctaccatgaagatatacttctttactatggttgcacagCCTGGAGCAGGAGCCGGTTGAGGTTACTGAGCCTGAAGATACAGAAGAGGAGCAAGAGgtgagcgtgctcctgggccaactcttactcccctcagcttatggggcagt Alignment from Pairagon CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG tggagcctctttctaccatgaagatatacttctttactatggttgcacagCCTGGAGCAGGAGCCGGTTGAGGTTACTGAGCCTGAAGATACAGAAGAGGAGCAAGAGgtgagcgtgctcctgggccaactcttactcccctcagcttatggggcagt Alignment from Exonerate_protein2genome CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG tggagcctctttctaccatgaagatatacttctttactatggttgcacagCCTGGAGCAGGAGCCGGTTGAGGTTACTGAGCCTGAAGATACAGAAGAGGAGCAAGAGgtgagcgtgctcctgggccaactcttactcccctcagcttatggggcagt Alignment from Exonerate_coding2genome CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG tggagcctctttctaccatgaagatatacttctttactatggttgcacagCCTGGAGCAGGAGCCGGTTGAGGTTACTGAGCCTGAAGATACAGAAGAGGAGCAAGAGgtgagcgtgctcctgggccaactcttactcccctcagcttatggggcagt Alignment from GeneWise CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG tggagcctctttctaccatgaagatatacttctttactatggttgcacagCCTGGAGCAGGAGCCGGTTGAGGTTACTGAGCCTGAAGATACAGAAGAGGAGCAAGAGgtgagcgtgctcctgggccaactcttactcccctcagcttatggggcagt #### Incenp_ID2615_4 --> 2 - 2 Original Alignment gtCACAGTTACCTGGAGAGGCTCCTGAATGTTGAAGTGCCTCAGAATGTTgg gggaacacagtcaggtggtatgtcttcattcctttgcttctgttccacaggtCACAGTTATCTGGAGAGGCTCCTGAATGTCGAGGTGCCCCGGATTGTTgggtaggagcccattttccttaggtgatttctctccatggcttcattgtctg Alignment from CESAR gtCACAGTTACCTGGAGAGGCTCCTGAATGTTGAAGTGCCTCAGAATGTTgg gggaacacagtcaggtggtatgtcttcattcctttgcttctgttccacaggtCACAGTTATCTGGAGAGGCTCCTGAATGTCGAGGTGCCCCGGATTGTTgggtaggagcccattttccttaggtgatttctctccatggcttcattgtctg Alignment from Spaln_aa2Genome GTCACAGTTACCTGGAGAGGCTCCTGAATGTTGAAGTGCCTCAGAATGTTGG gggaacacagtcaggtggtatgtcttcattcctttgcttctgttccacagGTCACAGTTATCTGGAGAGGCTCCTGAATGTCGAGGTGCCCCGGATTGTTGGgtaggagcccattttccttaggtgatttctctccatggcttcattgtctg Alignment from Spaln_nt2Genome GTCACAGTTACCTGGAGAGGCTCCTGAATGTTGAAGTGCCTCAGAATGTTGG gggaacacagtcaggtggtatgtcttcattcctttgcttctgttccacagGTCACAGTTATCTGGAGAGGCTCCTGAATGTCGAGGTGCCCCGGATTGTTGGgtaggagcccattttccttaggtgatttctctccatggcttcattgtctg Alignment from Pairagon GTCACAGTTACCTGGAGAGGCTCCTGAATGTTGAAGTGCCTCAGAATGTTGG gggaacacagtcaggtggtatgtcttcattcctttgcttctgttccacagGTCACAGTTATCTGGAGAGGCTCCTGAATGTCGAGGTGCCCCGGATTGTTGGgtaggagcccattttccttaggtgatttctctccatggcttcattgtctg Alignment from Exonerate_protein2genome GTCACAGTTACCTGGAGAGGCTCCTGAATGTTGAAGTGCCTCAGAATGTTGG gggaacacagtcaggtggtatgtcttcattcctttgcttctgttccacagGTCACAGTTATCTGGAGAGGCTCCTGAATGTCGAGGTGCCCCGGATTGTTGGgtaggagcccattttccttaggtgatttctctccatggcttcattgtctg Alignment from Exonerate_coding2genome GTCACAGTTACCTGGAGAGGCTCCTGAATGTTGAAGTGCCTCAGAATGTTGG gggaacacagtcaggtggtatgtcttcattcctttgcttctgttccacagGTCACAGTTATCTGGAGAGGCTCCTGAATGTCGAGGTGCCCCGGATTGTTGGgtaggagcccattttccttaggtgatttctctccatggcttcattgtctg Alignment from GeneWise GTCACAGTTACCTGGAGAGGCTCCTGAATGTTGAAGTGCCTCAGAATGTTGG gggaacacagtcaggtggtatgtcttcattcctttgcttctgttccacagGTCACAGTTATCTGGAGAGGCTCCTGAATGTCGAGGTGCCCCGGATTGTTGGgtaggagcccattttccttaggtgatttctctccatggcttcattgtctg #### Incenp_ID2616_3 --> 1 - 1 Original Alignment gTTATCCCGCAGAAAGTCTCGGAGCAGTCAGGTGGGTACCCGG---CACCTCCGCAGCAAGCCCGTTACTATTGTTGAG------GAGAATGGCTTCCCTGTGTTGCAGCGGATAACCCGGGCCACAGCTGCAGCAGCGGCAGCAGCA------GCGGCAGCGTCTGTGGCATCAGCTTCTTCCTCTTCCACTGCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTGGAGATAAGCACTAGTGAACGACTGAGTGCAGAACTACAACTCACTAAGCTCAAAGGTAGCCTTCCTCCATCTCCAGTTTCCCAAGGCACCCTGACATCAGAGGAGGAACTAACACCCAAGAAATCAGAGGCTGGAAAGCTGGACTCTGTCACAGTGAACTCCCTCAAGGCTACCCCTCAGAGCCCCAAGAACCGAGGGGTTGGGGAAGGACGTTCTGTTTCCAAGCTCAAGATTGCTCGGGCCTCCTGGGGGCTGCAGGACTCTCCTGGCTCTACAGACTCACCATGGCAAGAGCGGGTGCTTTCTCCTATCCTGCTGAATAACATCTTGCCCACAACAGCCAAGAGCCCTCTTGGGAATATTCGGTCAGTGCGGCGAAGCCTGATTTCCCAGGATTCCCAAGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAAGAAAATGGCAGTCGCAGATCAAGCAGAAGGATTGCCAAGAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTt tgtaggttcttcctctggaacccttatgtccatcccctggtccttgacagaTTGTCACACAGAAAGTCACAGAGTAGCCTGGTGGGTAGTCGTCGATATCTCAGGGGTAAACCTGTCATAATTGCTGAAGTAGATGAGAATGGATTTCCTGTTTTGCAGTGGATAACTCATGCTACAGCAGCAGCAGCAGCAGCTGCAGCAGCAACAGCAACATCTGTGGCATCAGCCTCTTTTCCCTCCACTTCAGGGTCCCCTACAGTACTGACTAAGAAGGCAGTGGTAGAGATAAGTACAGGTGAACGACTGAGTGCA---TTACAACTCACTAAGCTAAAAGACAGCTTGCCACCATCACCCGTTTCTCACGGCACGCTGACCTCCGATAAAGAATTGACACCCAAAAAGTCAGAGTCAGGAAAACTTGATTCTGTCACAGTAAACTCTCTGATGGCTACACCTCAGAGCCCCAGGAACCGAGGGGTAGGGGAAGGACGGTCTGTCTCCAAACTCAAGATTGCACAGGCATCCTGGGGA------GACTCCCCTGGATCA---GAGTTG------GAAGAGCAGGTACTCTCCCCGATTTTGCTGAACAATATCCTGCCCACAACCACACAAAGCCACCTTGGAAATATCCACTCACTACAACGGAGCCTGGTTTCTCAGGATTCCCATGTGCCACTAGCCTCAAAGTATAACTTGGTGGCAAAACAAAAGAATGGGACTCGCAGGTCTAGGAGGAGCGTTGCAAAACAGGCATCCAAGGAGCCCGAGGCTTCAGCTCAAATCATTtgtaggggagacactggtgctgatgtgggtcaaggctattataagtgatcc Alignment from CESAR gTTATCCCGCAGAAAGTCTCGGAGCAGTCAGGTGGGTACC---CGGCACCTCCGCAGCAAGCCCGTTACTATT------GTTGAGGAGAATGGCTTCCCTGTGTTGCAGCGGATAACCCGGGCCACAGCTGCAGCAGCGGCAGCAGCAGCGGCAGCG------TCTGTGGCATCAGCTTCTTCCTCTTCCACTGCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTGGAGATAAGCACTAGTGAACGACTGAGTGCAGAACTACAACTCACTAAGCTCAAAGGTAGCCTTCCTCCATCTCCAGTTTCCCAAGGCACCCTGACATCAGAGGAGGAACTAACACCCAAGAAATCAGAGGCTGGAAAGCTGGACTCTGTCACAGTGAACTCCCTCAAGGCTACCCCTCAGAGCCCCAAGAACCGAGGGGTTGGGGAAGGACGTTCTGTTTCCAAGCTCAAGATTGCTCGGGCCTCCTGGGGGCTGCAGGACTCTCCTGGCTCTACAGACTCACCATGGCAAGAGCGGGTGCTTTCTCCTATCCTGCTGAATAACATCTTGCCCACAACAGCCAAGAGCCCTCTTGGGAATATTCGGTCAGTGCGGCGAAGCCTGATTTCCCAGGATTCCCAAGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAAGAAAATGGCAGTCGCAGATCAAGCAGAAGGATTGCCAAGAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTt tgtaggttcttcctctggaacccttatgtccatcccctggtccttgacagaTTGTCACACAGAAAGTCACAGAGTAGCCTGGTGGGTAGTCGTCGATATCTCAGGGGTAAACCTGTCATAATTGCTGAAGTAGATGAGAATGGATTTCCTGTTTTGCAGTGGATAACTCATGCTACAGCAGCAGCAGCAGCAGCTGCAGCAGCAACAGCAACATCTGTGGCATCAGCCTCTTTTCCCTCCACTTCAGGGTCCCCTACAGTACTGACTAAGAAGGCAGTGGTAGAGATAAGTACAGGTGAACGACTGAGTGCA---TTACAACTCACTAAGCTAAAAGACAGCTTGCCACCATCACCCGTTTCTCACGGCACGCTGACCTCCGATAAAGAATTGACACCCAAAAAGTCAGAGTCAGGAAAACTTGATTCTGTCACAGTAAACTCTCTGATGGCTACACCTCAGAGCCCCAGGAACCGAGGGGTAGGGGAAGGACGGTCTGTCTCCAAACTCAAGATTGCACAGGCATCCTGGGGA------GACTCCCCTGGA---------TCAGAGTTGGAAGAGCAGGTACTCTCCCCGATTTTGCTGAACAATATCCTGCCCACAACCACACAAAGCCACCTTGGAAATATCCACTCACTACAACGGAGCCTGGTTTCTCAGGATTCCCATGTGCCACTAGCCTCAAAGTATAACTTGGTGGCAAAACAAAAGAATGGGACTCGCAGGTCTAGGAGGAGCGTTGCAAAACAGGCATCCAAGGAGCCCGAGGCTTCAGCTCAAATCATTtgtaggggagacactggtgctgatgtgggtcaaggctattataagtgatcc Alignment from Spaln_aa2Genome GTTATCCCGCAGAAAGTCTCGGAGCAGTCAGGTGGGTACC---CGGCACCTCCGCAGCAAGCCCGTTACTATT------GTTGAGGAGAATGGCTTCCCTGTGTTGCAGCGGATAACCCGGGCCACAGCT---GCAGCAGCGGCAGCAGCAGCGGCAGCGTCTGTGGCATCAGCTTCTTCCTCTTCCACTGCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTGGAGATAAGCACTAGTGAACGACTGAGTGCAGAACTACAACTCACTAAGCTCAAAGGTAGCCTTCCTCCATCTCCAGTTTCCCAAGGCACCCTGACATCAGAGGAGGAACTAACACCCAAGAAATCAGAGGCTGGAAAGCTGGACTCTGTCACAGTGAACTCCCTCAAGGCTACCCCTCAGAGCCCCAAGAACCGAGGGGTTGGGGAAGGACGTTCTGTTTCCAAGCTCAAGATTGCTCGGGCCTCCTGGGGGCTGCAGGACTCTCCTGGCTCTACAGACTCACCATGGCAAGAGCGGGTGCTTTCTCCTATCCTGCTGAATAACATCTTGCCCACAACAGCCAAGAGCCCTCTTGGGAATATTCGGTCAGTGCGGCGAAGCCTGATTTCCCAGGATTCCCAAGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAAGAAAATGGCAGTCGCAGATCAAGCAGAAGGATTGCCAAGAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTT tgtaggttcttcctctggaacccttatgtccatcccctggtccttgacagATTGTCACACAGAAAGTCACAGAGTAGCCTGGTGGGTAGTCGTCGATATCTCAGGGGTAAACCTGTCATAATTGCTGAAGTAGATGAGAATGGATTTCCTGTTTTGCAGTGGATAACTCATGCTACAGCAGCAGCAGCAGCAGCTGCAGCAGCAACAGCAACATCTGTGGCATCAGCCTCTTTTCCCTCCACTTCAGGGTCCCCTACAGTACTGACTAAGAAGGCAGTGGTAGAGATAAGTACAGGTGAACGACTGAGTGCATTACAACTCACTAAGCTAAAAGACAGCTTGCCACCATCACCCGTTTCTCACGGCACGCTGACCTCCGATAAAGAATTGACACCCAAAAAGTCAGAGTCAGGAAAACTTGATTCTGTCACAGTAAACTCTCTGATGGCTACACCTCAGAGCCCCAGGAACCGAGGGGTAGGGGAAGGACGGTCTGTCTCCAAACTCAAGATTGCACAGGCATCCTGGGGA------GACTCCCCTGGATCAGAG---------TTGGAAGAGCAGGTACTCTCCCCGATTTTGCTGAACAATATCCTGCCCACAACCACACAAAGCCACCTTGGAAATATCCACTCACTACAACGGAGCCTGGTTTCTCAGGATTCCCATGTGCCACTAGCCTCAAAGTATAACTTGGTGGCAAAACAAAAGAATGGGACTCGCAGGTCTAGGAGGAGCGTTGCAAAACAGGCATCCAAGGAGCCCGAGGCTTCAGCTCAAATCATTTgtaggggagacactggtgctgatgtgggtcaaggctattataagtgatcc Alignment from Spaln_nt2Genome GTTATCCCGCAGAAAGTCTCGGAGCAGTCAGGTGGGTACCCGGC---ACCTCCGCAGCAAGCCCGTTACTATTGTTGAGG------AGAATGGCTTCCCTGTGTTGCAGCGGATAACCCGGGCCACAGCTGCAGCA------GCGGCAGCAGCAGCGGCAGCGTCTGTGGCATCAGCTTCTTCCTCTTCCACTGCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTGGAGATAAGCACTAGTGAACGACTGAGTGCAGAACTACAACTCACTAAGCTCAAAGGTAGCCTTCCTCCATCTCCAGTTTCCCAAGGCACCCTGACATCAGAGGAGGAACTAACACCCAAGAAATCAGAGGCTGGAAAGCTGGACTCTGTCACAGTGAACTCCCTCAAGGCTACCCCTCAGAGCCCCAAGAACCGAGGGGTTGGGGAAGGACGTTCTGTTTCCAAGCTCAAGATTGCTCGGGCCTCCTGGGGGCTGCAGGACTCTCCTGGCTCTACAGACTCACCATGGCAAGAGCGGGTGCTTTCTCCTATCCTGCTGAATAACATCTTGCCCACAACAGCCAAGAGCCCTCTTGGGAATATTCGGTCAGTGCGGCGAAGCCTGATTTCCCAGGATTCCCAAGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAAGAAAATGGCAGTCGCAGATCAAGCAGAAGGATTGCCAAGAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTT tgtaggttcttcctctggaacccttatgtccatcccctggtccttgacagATTGTCACACAGAAAGTCACAGAGTAGCCTGGTGGGTAGTCGTCGATATCTCAGGGGTAAACCTGTCATAATTGCTGAAGTAGATGAGAATGGATTTCCTGTTTTGCAGTGGATAACTCATGCTACAGCAGCAGCAGCAGCAGCTGCAGCAGCAACAGCAACATCTGTGGCATCAGCCTCTTTTCCCTCCACTTCAGGGTCCCCTACAGTACTGACTAAGAAGGCAGTGGTAGAGATAAGTACAGGTGAACGACTGAGTGC---ATTACAACTCACTAAGCTAAAAGACAGCTTGCCACCATCACCCGTTTCTCACGGCACGCTGACCTCCGATAAAGAATTGACACCCAAAAAGTCAGAGTCAGGAAAACTTGATTCTGTCACAGTAAACTCTCTGATGGCTACACCTCAGAGCCCCAGGAACCGAGGGGTAGGGGAAGGACGGTCTGTCTCCAAACTCAAGATTGCACAGGCATCCTGGGG------AGACTCCCCTGGAT---CAGAGT-----TGG-AAGAGCAGGTACTCTCCCCGATTTTGCTGAACAATATCCTGCCCACAACCACACAAAGCCACCTTGGAAATATCCACTCACTACAACGGAGCCTGGTTTCTCAGGATTCCCATGTGCCACTAGCCTCAAAGTATAACTTGGTGGCAAAACAAAAGAATGGGACTCGCAGGTCTAGGAGGAGCGTTGCAAAACAGGCATCCAAGGAGCCCGAGGCTTCAGCTCAAATCATTTgtaggggagacactggtgctgatgtgggtcaaggctattataagtgatcc Alignment from Pairagon GTTATCCCGCAGAAAGTCTCGGAGCAGTCAGGTGGGTACCCGGCACCTCCGCAGCAAGCCCGTTACTATTGTTGAG----------------------------------------------GAGAATGGCTTCCCTGTGTTGCAGCGGATAACCCGGGCCACAGCTGCAGCAGCG------GCAGCAGCAGCGGCAGCGTCTGTGGCATCAGCTTCTTCCTCTTCCACTGCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTGGAGATAAGCACTAGTGAACGACTGAGTGCAGAACTACAACTCACTAAGCTCAAAGGTAGCCTTCCTCCATCTCCAGTTTCCCAAGGCACCCTGACATCAGAGGAGGAACTAACACCCAAGAAATCAGAGGCTGGAAAGCTGGACTCTGTCACAGTGAACTCCCTCAAGGCTACCCCTCAGAGCCCCAAGAACCGAGGGGTTGGGGAAGGACGTTCTGTTTCCAAGCTCAAGATTGCTCGGGCCTCCTGGGGGCTGCAGGACTCTCCTGGCTCTACAGACTCACCATG---------GCAAGAGCGGGTGCTTTCTCCTATCCTGCTGAATAACATCTTGCCCACAACAGCCAAGAGCCCTCTTGGGAATATTCGGTCAGTGCGGCGAAGCCTGATTTCCCAGGATTCCCAAGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAAGAAAATGGCAGTCGCAGATCAAGCAGAAGGATTGCCAAGAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTT tgtaggttcttcctctggaacccttatgtccatcccctggtccttgacagATTGTCACACAGAAAGTCACAGAGTAGCCTGGTGGGTA-------------------------------------GTCGTCGATATCTCAGGGGTAAACCTGTCATAATTGCTGAAGTAGATGAGAATGGATTTCCTGTTTTGCAGTGGATAACTCATGCTACAGCAGCAGCAGCAGCAGCTGCAGCAGCAACAGCAACATCTGTGGCATCAGCCTCTTTTCCCTCCACTTCAGGGTCCCCTACAGTACTGACTAAGAAGGCAGTGGTAGAGATAAGTACAGGTGAACGACTGAGTGC---ATTACAACTCACTAAGCTAAAAGACAGCTTGCCACCATCACCCGTTTCTCACGGCACGCTGACCTCCGATAAAGAATTGACACCCAAAAAGTCAGAGTCAGGAAAACTTGATTCTGTCACAGTAAACTCTCTGATGGCTACACCTCAGAGCCCCAGGAACCGAGGGGTAGGGGAAGGACGGTCTGTCTCCAAACTCAAGATTGCACAGGCATCCTGGGG------------------------AGACTCCCCTGGATCAGAGTTGGAAGAGCAGGTACTCTCCCCGATTTTGCTGAACAATATCCTGCCCACAACCACACAAAGCCACCTTGGAAATATCCACTCACTACAACGGAGCCTGGTTTCTCAGGATTCCCATGTGCCACTAGCCTCAAAGTATAACTTGGTGGCAAAACAAAAGAATGGGACTCGCAGGTCTAGGAGGAGCGTTGCAAAACAGGCATCCAAGGAGCCCGAGGCTTCAGCTCAAATCATTTgtaggggagacactggtgctgatgtgggtcaaggctattataagtgatcc Alignment from Exonerate_protein2genome GTTATCCCGCAGAAAGTCTCGGAGCAGTCAGGTGGGTACC---CGGCACCTCCGCAGCAAGCCCGTTACTATT------GTTGAGGAGAATGGCTTCCCTGTGTTGCAGCGGATAACCCGGGCCACAGCTGCAGCAGCGGCAGCAGCAGCG------GCAGCGTCTGTGGCATCAGCTTCTTCCTCTTCCACTGCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTGGAGATAAGCACTAGTGAACGACTGAGTGCAGAACTACAACTCACTAAGCTCAAAGGTAGCCTTCCTCCATCTCCAGTTTCCCAAGGCACCCTGACATCAGAGGAGGAACTAACACCCAAGAAATCAGAGGCTGGAAAGCTGGACTCTGTCACAGTGAACTCCCTCAAGGCTACCCCTCAGAGCCCCAAGAACCGAGGGGTTGGGGAAGGACGTTCTGTTTCCAAGCTCAAGATTGCTCGGGCCTCCTGGGGGCTGCAGGACTCTCCTGGCTCTACAGACTCACCATGGCAAGAGCGGGTGCTTTCTCCTATCCTGCTGAATAACATCTTGCCCACAACAGCCAAGAGCCCTCTTGGGAATATTCGGTCAGTGCGGCGAAGCCTGATTTCCCAGGATTCCCAAGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAAGAAAATGGCAGTCGCAGATCAAGCAGAAGGATTGCCAAGAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTT tgtaggttcttcctctggaacccttatgtccatcccctggtccttgacagATTGTCACACAGAAAGTCACAGAGTAGCCTGGTGGGTAGTCGTCGATATCTCAGGGGTAAACCTGTCATAATTGCTGAAGTAGATGAGAATGGATTTCCTGTTTTGCAGTGGATAACTCATGCTACAGCAGCAGCAGCAGCAGCTGCAGCAGCAACAGCAACATCTGTGGCATCAGCCTCTTTTCCCTCCACTTCAGGGTCCCCTACAGTACTGACTAAGAAGGCAGTGGTAGAGATAAGTACAGGTGAACGACTGAGTGCA---TTACAACTCACTAAGCTAAAAGACAGCTTGCCACCATCACCCGTTTCTCACGGCACGCTGACCTCCGATAAAGAATTGACACCCAAAAAGTCAGAGTCAGGAAAACTTGATTCTGTCACAGTAAACTCTCTGATGGCTACACCTCAGAGCCCCAGGAACCGAGGGGTAGGGGAAGGACGGTCTGTCTCCAAACTCAAGATTGCACAGGCATCCTGGGGA------GACTCCCCTGGA---------TCAGAGTTGGAAGAGCAGGTACTCTCCCCGATTTTGCTGAACAATATCCTGCCCACAACCACACAAAGCCACCTTGGAAATATCCACTCACTACAACGGAGCCTGGTTTCTCAGGATTCCCATGTGCCACTAGCCTCAAAGTATAACTTGGTGGCAAAACAAAAGAATGGGACTCGCAGGTCTAGGAGGAGCGTTGCAAAACAGGCATCCAAGGAGCCCGAGGCTTCAGCTCAAATCATTTgtaggggagacactggtgctgatgtgggtcaaggctattataagtgatcc Alignment from Exonerate_coding2genome GTTATCCCGCAGAAAGTCTCGGAGCAGTCAGGTGGGTACC---CGGCACCTCCGCAGCAAGCCCGTTACTATT------GTTGAGGAGAATGGCTTCCCTGTGTTGCAGCGGATAACCCGGGCCACAGCTGCAGCAGCGGCAGCAGCAGCG------GCAGCGTCTGTGGCATCAGCTTCTTCCTCTTCCACTGCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTGGAGATAAGCACTAGTGAACGACTGAGTGCAGAACTACAACTCACTAAGCTCAAAGGTAGCCTTCCTCCATCTCCAGTTTCCCAAGGCACCCTGACATCAGAGGAGGAACTAACACCCAAGAAATCAGAGGCTGGAAAGCTGGACTCTGTCACAGTGAACTCCCTCAAGGCTACCCCTCAGAGCCCCAAGAACCGAGGGGTTGGGGAAGGACGTTCTGTTTCCAAGCTCAAGATTGCTCGGGCCTCCTGGGGGCTGCAGGACTCTCCTGGCTCTACAGACTCACCATGGCAAGAGCGGGTGCTTTCTCCTATCCTGCTGAATAACATCTTGCCCACAACAGCCAAGAGCCCTCTTGGGAATATTCGGTCAGTGCGGCGAAGCCTGATTTCCCAGGATTCCCAAGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAAGAAAATGGCAGTCGCAGATCAAGCAGAAGGATTGCCAAGAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTT tgtaggttcttcctctggaacccttatgtccatcccctggtccttgacagATTGTCACACAGAAAGTCACAGAGTAGCCTGGTGGGTAGTCGTCGATATCTCAGGGGTAAACCTGTCATAATTGCTGAAGTAGATGAGAATGGATTTCCTGTTTTGCAGTGGATAACTCATGCTACAGCAGCAGCAGCAGCAGCTGCAGCAGCAACAGCAACATCTGTGGCATCAGCCTCTTTTCCCTCCACTTCAGGGTCCCCTACAGTACTGACTAAGAAGGCAGTGGTAGAGATAAGTACAGGTGAACGACTGAGTGCA---TTACAACTCACTAAGCTAAAAGACAGCTTGCCACCATCACCCGTTTCTCACGGCACGCTGACCTCCGATAAAGAATTGACACCCAAAAAGTCAGAGTCAGGAAAACTTGATTCTGTCACAGTAAACTCTCTGATGGCTACACCTCAGAGCCCCAGGAACCGAGGGGTAGGGGAAGGACGGTCTGTCTCCAAACTCAAGATTGCACAGGCATCCTGGGGA------GACTCCCCTGGA---------TCAGAGTTGGAAGAGCAGGTACTCTCCCCGATTTTGCTGAACAATATCCTGCCCACAACCACACAAAGCCACCTTGGAAATATCCACTCACTACAACGGAGCCTGGTTTCTCAGGATTCCCATGTGCCACTAGCCTCAAAGTATAACTTGGTGGCAAAACAAAAGAATGGGACTCGCAGGTCTAGGAGGAGCGTTGCAAAACAGGCATCCAAGGAGCCCGAGGCTTCAGCTCAAATCATTTgtaggggagacactggtgctgatgtgggtcaaggctattataagtgatcc Alignment from GeneWise GTTATCCCGCAGAAAGTCTCGGAGCAGTCAGGTGGGTACCCGG---CACCTCCGCAGCAAGCCCGTTACTATT------GTTGAGGAGAATGGCTTCCCTGTGTTGCAGCGGATAACCCGGGCCACAGCTGCAGCAGCGGCAGCAGCAGCGGCAGCG------TCTGTGGCATCAGCTTCTTCCTCTTCCACTGCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTGGAGATAAGCACTAGTGAACGACTGAGTGCAGAACTACAACTCACTAAGCTCAAAGGTAGCCTTCCTCCATCTCCAGTTTCCCAAGGCACCCTGACATCAGAGGAGGAACTAACACCCAAGAAATCAGAGGCTGGAAAGCTGGACTCTGTCACAGTGAACTCCCTCAAGGCTACCCCTCAGAGCCCCAAGAACCGAGGGGTTGGGGAAGGACGTTCTGTTTCCAAGCTCAAGATTGCTCGGGCCTCCTGGGGGCTGCAGGACTCTCCTGGCTCTACAGACTCACCATGGCAAGAGCGGGTGCTTTCTCCTATCCTGCTGAATAACATCTTGCCCACAACAGCCAAGAGCCCTCTTGGGAATATTCGGTCAGTGCGGCGAAGCCTGATTTCCCAGGATTCCCAAGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAAGAAAATGGCAGTCGCAGATCAAGCAGAAGGATTGCCAAGAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTT tgtaggttcttcctctggaacccttatgtccatcccctggtccttgacagATTGTCACACAGAAAGTCACAGAGTAGCCTGGTGGGTAGTCGTCGATATCTCAGGGGTAAACCTGTCATAATTGCTGAAGTAGATGAGAATGGATTTCCTGTTTTGCAGTGGATAACTCATGCTACAGCAGCAGCAGCAGCAGCTGCAGCAGCAACAGCAACATCTGTGGCATCAGCCTCTTTTCCCTCCACTTCAGGGTCCCCTACAGTACTGACTAAGAAGGCAGTGGTAGAGATAAGTACAGGTGAACGACTGAGTGCA---TTACAACTCACTAAGCTAAAAGACAGCTTGCCACCATCACCCGTTTCTCACGGCACGCTGACCTCCGATAAAGAATTGACACCCAAAAAGTCAGAGTCAGGAAAACTTGATTCTGTCACAGTAAACTCTCTGATGGCTACACCTCAGAGCCCCAGGAACCGAGGGGTAGGGGAAGGACGGTCTGTCTCCAAACTCAAGATTGCACAGGCATCCTGGGGA------GACTCCCCTGGATCAGAG---------TTGGAAGAGCAGGTACTCTCCCCGATTTTGCTGAACAATATCCTGCCCACAACCACACAAAGCCACCTTGGAAATATCCACTCACTACAACGGAGCCTGGTTTCTCAGGATTCCCATGTGCCACTAGCCTCAAAGTATAACTTGGTGGCAAAACAAAAGAATGGGACTCGCAGGTCTAGGAGGAGCGTTGCAAAACAGGCATCCAAGGAGCCCGAGGCTTCAGCTCAAATCATTTgtaggggagacactggtgctgatgtgggtcaaggctattataagtgatcc #### Incenp_ID2617_2 --> 1 - 2 Original Alignment aGAATTCAGCAATGAGCCAGAGCTGATGCCCAAAACTCCTTCTCAGAAAAACCGTCGGAAGAAGAGGCGGGTGTCT---AACATTCAGGATGAAAACAGAGATCCCGTGAGGAAAag ccaagatgaagatctcgtcatccctaaggcctcatctttgtgtctttaagaGTATTCATCAATGAGCCAGAGCAGATACCCAAAACTCCTTCTCAGAAAACTCACCGAAAGAAGTGGAGGGTGACAACAAACATTCAAGATGAA------GATCCTGTAATAAAGaggtgaagtagcaacattgtgctggaagaaccttggagttactagatgtaga Alignment from CESAR aGAATTCAGCAATGAGCCAGAGCTGATGCCCAAAACTCCTTCTCAGAAAAACCGTCGGAAGAAGAGGCGGGTGTCT---AACATTCAGGATGAAAACAGAGATCCCGTGAGGAAAag ccaagatgaagatctcgtcatccctaaggcctcatctttgtgtctttaagaGTATTCATCAATGAGCCAGAGCAGATACCCAAAACTCCTTCTCAGAAAACTCACCGAAAGAAGTGGAGGGTGACAACAAACATTCAAGATGAA------GATCCTGTAATAAAGaggtgaagtagcaacattgtgctggaagaaccttggagttactagatgtaga Alignment from Spaln_aa2Genome AGAATTCAGCAATGAGCCAGAGCTGATGCCCAAAACTCCTTCTCAGAAAAACCGTCGGAAGAAGAGGCGGGTG---TCTAACATTCAGGATGAAAACAGAGATCCCGTGAGGAAAAG ccaagatgaagatctcgtcatccctaaggcctcatctttgtgtctttaagAGTATTCATCAATGAGCCAGAGCAGATACCCAAAACTCCTTCTCAGAAAACTCACCGAAAGAAGTGGAGGGTGACAACAAACATTCAAGATGAA------GATCCTGTAATAAAGAGgtgaagtagcaacattgtgctggaagaaccttggagttactagatgtaga Alignment from Spaln_nt2Genome AGAATTCAGCAATGAGCCAGAGCTGATGCCCAAAACTCCTTCTCAGAAAAACCGTCGGAAGAAGAGGCGGGTGTCTA---ACATTCAGGATGAAAACAGAGATCCCGTGAGGAAAAG ccaagatgaagatctcgtcatccctaaggcctcatctttgtgtctttaagAGTATTCATCAATGAGCCAGAGCAGATACCCAAAACTCCTTCTCAGAAAACTCACCGAAAGAAGTGGAGGGTGACAACAAACATTCAAGATGA------AGATCCTGTAATAAAGAGgtgaagtagcaacattgtgctggaagaaccttggagttactagatgtaga Alignment from Pairagon AGAATTCAGCAATGAGCCAGAGCTGATGCCCAAAACTCCTTCTCAGAAAAACCGTCGGAAGAAGAGGCGGGTGTCTA---ACATTCAGGATGAAAACAGAGATCCCGTGAGGAAAAG ccaagatgaagatctcgtcatccctaaggcctcatctttgtgtctttaagAGTATTCATCAATGAGCCAGAGCAGATACCCAAAACTCCTTCTCAGAAAACTCACCGAAAGAAGTGGAGGGTGACAACAAACATTCAAGATGAA------GATCCTGTAATAAAGAGgtgaagtagcaacattgtgctggaagaaccttggagttactagatgtaga Alignment from Exonerate_protein2genome AGAATTCAGCAATGAGCCAGAGCTGATGCCCAAAACTCCTTCTCAGAAAAACCGTCGGAAGAAGAGGCGGGTGTCTAACATTCAGGATGAAAACAGAGATCCCGTGAGGAAAAG ccaagatgaagatctcgtcatccctaaggcctcatctttgtgtctttaagAGTATTCATCAATGAGCCAGAGCAGATACCCAAAACTCCTTCTCAGAAAACTCACCGAAAGAAGTGGAGGGTGACAACA---AACATTCAAGATGAAGATCCTGTAATAAAGAGgtgaagtagcaacattgtgctggaagaaccttggagttactagatgtaga Alignment from Exonerate_coding2genome AGAATTCAGCAATGAGCCAGAGCTGATGCCCAAAACTCCTTCTCAGAAAAACCGTCGGAAGAAGAGGCGGGTGTCTAACATTCAGGATGAAAACAGAGATCCCGTGAGGAAAAG ccaagatgaagatctcgtcatccctaaggcctcatctttgtgtctttaagAGTATTCATCAATGAGCCAGAGCAGATACCCAAAACTCCTTCTCAGAAAACTCACCGAAAGAAGTGGAGGGTGACAACA---AACATTCAAGATGAAGATCCTGTAATAAAGAGgtgaagtagcaacattgtgctggaagaaccttggagttactagatgtaga Alignment from GeneWise AGAATTCAGCAATGAGCCAGAGCTGATGCCCAAAACTCCTTCTCAGAAAAACCGTCGGAAGAAGAGGCGGGTGTCT---AACATTCAGGATGAAAACAGAGATCCCGTGAGGAAAAG ccaagatgaagatctcgtcatccctaaggcctcatctttgtgtctttaagAGTATTCATCAATGAGCCAGAGCAGATACCCAAAACTCCTTCTCAGAAAACTCACCGAAAGAAGTGGAGGGTGACAACAAACATTCAAGATGAA------GATCCTGTAATAAAGAGgtgaagtagcaacattgtgctggaagaaccttggagttactagatgtaga #### Jak2_ID6226_2 --> 2 - 2 Original Alignment gtATTACGCCTGTGTATCATAATATGTTTGCGTTAATGAGTGAAACCGAAAGGATCTGGTACCCACCCAATCATGTCTTCCACATAGACGAGTCAACCAGGCATGACATACTCTACAGGATAag acttacttttctgactagttgaagcaccacacatccttttctgcctttaggtATTACACCTGTCTATCATAATATGTTTGCATTGATGAGTGAGACCGAAAGGATCTGGTATCCACCCAATCATGTCTTCCACATAGATGAGTTGACCAGGCACGACATACTCTACAGAATAaggtgagtctgttattaagtcattggcatacaaacgagtgcttggactccat Alignment from CESAR gtATTACGCCTGTGTATCATAATATGTTTGCGTTAATGAGTGAAACCGAAAGGATCTGGTACCCACCCAATCATGTCTTCCACATAGACGAGTCAACCAGGCATGACATACTCTACAGGATAag acttacttttctgactagttgaagcaccacacatccttttctgcctttaggtATTACACCTGTCTATCATAATATGTTTGCATTGATGAGTGAGACCGAAAGGATCTGGTATCCACCCAATCATGTCTTCCACATAGATGAGTTGACCAGGCACGACATACTCTACAGAATAaggtgagtctgttattaagtcattggcatacaaacgagtgcttggactccat Alignment from Spaln_aa2Genome GTATTACGCCTGTGTATCATAATATGTTTGCGTTAATGAGTGAAACCGAAAGGATCTGGTACCCACCCAATCATGTCTTCCACATAGACGAGTCAACCAGGCATGACATACTCTACAGGATAAG acttacttttctgactagttgaagcaccacacatccttttctgcctttagGTATTACACCTGTCTATCATAATATGTTTGCATTGATGAGTGAGACCGAAAGGATCTGGTATCCACCCAATCATGTCTTCCACATAGATGAGTTGACCAGGCACGACATACTCTACAGAATAAGgtgagtctgttattaagtcattggcatacaaacgagtgcttggactccat Alignment from Spaln_nt2Genome GTATTACGCCTGTGTATCATAATATGTTTGCGTTAATGAGTGAAACCGAAAGGATCTGGTACCCACCCAATCATGTCTTCCACATAGACGAGTCAACCAGGCATGACATACTCTACAGGATAAG acttacttttctgactagttgaagcaccacacatccttttctgcctttagGTATTACACCTGTCTATCATAATATGTTTGCATTGATGAGTGAGACCGAAAGGATCTGGTATCCACCCAATCATGTCTTCCACATAGATGAGTTGACCAGGCACGACATACTCTACAGAATAAGgtgagtctgttattaagtcattggcatacaaacgagtgcttggactccat Alignment from Pairagon GTATTACGCCTGTGTATCATAATATGTTTGCGTTAATGAGTGAAACCGAAAGGATCTGGTACCCACCCAATCATGTCTTCCACATAGACGAGTCAACCAGGCATGACATACTCTACAGGATAAG acttacttttctgactagttgaagcaccacacatccttttctgcctttagGTATTACACCTGTCTATCATAATATGTTTGCATTGATGAGTGAGACCGAAAGGATCTGGTATCCACCCAATCATGTCTTCCACATAGATGAGTTGACCAGGCACGACATACTCTACAGAATAAGgtgagtctgttattaagtcattggcatacaaacgagtgcttggactccat Alignment from Exonerate_protein2genome GTATTACGCCTGTGTATCATAATATGTTTGCGTTAATGAGTGAAACCGAAAGGATCTGGTACCCACCCAATCATGTCTTCCACATAGACGAGTCAACCAGGCATGACATACTCTACAGGATAAG acttacttttctgactagttgaagcaccacacatccttttctgcctttagGTATTACACCTGTCTATCATAATATGTTTGCATTGATGAGTGAGACCGAAAGGATCTGGTATCCACCCAATCATGTCTTCCACATAGATGAGTTGACCAGGCACGACATACTCTACAGAATAAGgtgagtctgttattaagtcattggcatacaaacgagtgcttggactccat Alignment from Exonerate_coding2genome GTATTACGCCTGTGTATCATAATATGTTTGCGTTAATGAGTGAAACCGAAAGGATCTGGTACCCACCCAATCATGTCTTCCACATAGACGAGTCAACCAGGCATGACATACTCTACAGGATAAG acttacttttctgactagttgaagcaccacacatccttttctgcctttagGTATTACACCTGTCTATCATAATATGTTTGCATTGATGAGTGAGACCGAAAGGATCTGGTATCCACCCAATCATGTCTTCCACATAGATGAGTTGACCAGGCACGACATACTCTACAGAATAAGgtgagtctgttattaagtcattggcatacaaacgagtgcttggactccat Alignment from GeneWise GTATTACGCCTGTGTATCATAATATGTTTGCGTTAATGAGTGAAACCGAAAGGATCTGGTACCCACCCAATCATGTCTTCCACATAGACGAGTCAACCAGGCATGACATACTCTACAGGATAAG acttacttttctgactagttgaagcaccacacatccttttctgcctttagGTATTACACCTGTCTATCATAATATGTTTGCATTGATGAGTGAGACCGAAAGGATCTGGTATCCACCCAATCATGTCTTCCACATAGATGAGTTGACCAGGCACGACATACTCTACAGAATAAGgtgagtctgttattaagtcattggcatacaaacgagtgcttggactccat #### Jak2_ID6227_3 --> 1 - 0 Original Alignment gTTCTACTTCCCTCATTGGTACTGTAGTGGCAGCAGCAGAACCTACAGATACGGAGTGTCCCGTGGGGCTGAAGCTCCTCTGCTTGATGACTTTGTCATGTCTTACCTTTTTGCTCAG cagtttggctgtggaggctacttggtctaagcgtcgtgactctcttgcaggTTCTACTTCCTCCATTGGTACTGTAGTGGGAGCAGCAAAACTTACAGATATGGGGTGTCCCATGGGGCTGAGGCATCTTTGCTTGATGCTTTTGTCATGACCTATCTACTTCCTCAGgtaagtctaagatatgactaacataaatactccgtaaatcaagttctcat Alignment from CESAR gTTCTACTTCCCTCATTGGTACTGTAGTGGCAGCAGCAGAACCTACAGATACGGAGTGTCCCGTGGGGCTGAAGCTCCTCTGCTTGATGACTTTGTCATGTCTTACCTTTTTGCTCAG cagtttggctgtggaggctacttggtctaagcgtcgtgactctcttgcaggTTCTACTTCCTCCATTGGTACTGTAGTGGGAGCAGCAAAACTTACAGATATGGGGTGTCCCATGGGGCTGAGGCATCTTTGCTTGATGCTTTTGTCATGACCTATCTACTTCCTCAGgtaagtctaagatatgactaacataaatactccgtaaatcaagttctcat Alignment from Spaln_aa2Genome GTTCTACTTCCCTCATTGGTACTGTAGTGGCAGCAGCAGAACCTACAGATACGGAGTGTCCCGTGGGGCTGAAGCTCCTCTGCTTGATGACTTTGTCATGTCTTACCTTTTTGCTCAG cagtttggctgtggaggctacttggtctaagcgtcgtgactctcttgcagGTTCTACTTCCTCCATTGGTACTGTAGTGGGAGCAGCAAAACTTACAGATATGGGGTGTCCCATGGGGCTGAGGCATCTTTGCTTGATGCTTTTGTCATGACCTATCTACTTCCTCAGgtaagtctaagatatgactaacataaatactccgtaaatcaagttctcat Alignment from Spaln_nt2Genome GTTCTACTTCCCTCATTGGTACTGTAGTGGCAGCAGCAGAACCTACAGATACGGAGTGTCCCGTGGGGCTGAAGCTCCTCTGCTTGATGACTTTGTCATGTCTTACCTTTTTGCTCAG cagtttggctgtggaggctacttggtctaagcgtcgtgactctcttgcagGTTCTACTTCCTCCATTGGTACTGTAGTGGGAGCAGCAAAACTTACAGATATGGGGTGTCCCATGGGGCTGAGGCATCTTTGCTTGATGCTTTTGTCATGACCTATCTACTTCCTCAGgtaagtctaagatatgactaacataaatactccgtaaatcaagttctcat Alignment from Pairagon GTTCTACTTCCCTCATTGGTACTGTAGTGGCAGCAGCAGAACCTACAGATACGGAGTGTCCCGTGGGGCTGAAGCTCCTCTGCTTGATGACTTTGTCATGTCTTACCTTTTTGCTCAG cagtttggctgtggaggctacttggtctaagcgtcgtgactctcttgcagGTTCTACTTCCTCCATTGGTACTGTAGTGGGAGCAGCAAAACTTACAGATATGGGGTGTCCCATGGGGCTGAGGCATCTTTGCTTGATGCTTTTGTCATGACCTATCTACTTCCTCAGgtaagtctaagatatgactaacataaatactccgtaaatcaagttctcat Alignment from Exonerate_protein2genome GTTCTACTTCCCTCATTGGTACTGTAGTGGCAGCAGCAGAACCTACAGATACGGAGTGTCCCGTGGGGCTGAAGCTCCTCTGCTTGATGACTTTGTCATGTCTTACCTTTTTGCTCAG cagtttggctgtggaggctacttggtctaagcgtcgtgactctcttgcagGTTCTACTTCCTCCATTGGTACTGTAGTGGGAGCAGCAAAACTTACAGATATGGGGTGTCCCATGGGGCTGAGGCATCTTTGCTTGATGCTTTTGTCATGACCTATCTACTTCCTCAGgtaagtctaagatatgactaacataaatactccgtaaatcaagttctcat Alignment from Exonerate_coding2genome GTTCTACTTCCCTCATTGGTACTGTAGTGGCAGCAGCAGAACCTACAGATACGGAGTGTCCCGTGGGGCTGAAGCTCCTCTGCTTGATGACTTTGTCATGTCTTACCTTTTTGCTCAG cagtttggctgtggaggctacttggtctaagcgtcgtgactctcttgcagGTTCTACTTCCTCCATTGGTACTGTAGTGGGAGCAGCAAAACTTACAGATATGGGGTGTCCCATGGGGCTGAGGCATCTTTGCTTGATGCTTTTGTCATGACCTATCTACTTCCTCAGgtaagtctaagatatgactaacataaatactccgtaaatcaagttctcat Alignment from GeneWise GTTCTACTTCCCTCATTGGTACTGTAGTGGCAGCAGCAGAACCTACAGATACGGAGTGTCCCGTGGGGCTGAAGCTCCTCTGCTTGATGACTTTGTCATGTCTTACCTTTTTGCTCAG cagtttggctgtggaggctacttggtctaagcgtcgtgactctcttgcagGTTCTACTTCCTCCATTGGTACTGTAGTGGGAGCAGCAAAACTTACAGATATGGGGTGTCCCATGGGGCTGAGGCATCTTTGCTTGATGCTTTTGTCATGACCTATCTACTTCCTCAGgtaagtctaagatatgactaacataaatactccgtaaatcaagttctcat #### Jak2_ID6229_5 --> 1 - 0 Original Alignment cTACAAGACATTCTTACCAAAGTGCGTTCGAGCGAAGATCCAAGACTATCACATTTTAACCCGGAAGCGAATCAGGTACAGATTTCGCAGATTCATTCAGCAATTCAGTCAATGTAAAGCCACTGCCAGGAACCTAAAACTTAAGTATCTTATAAACCTGGAAACCCTGCAGTCTGCCTTCTACACAGAACAGTTTGAAGTAAAAGAATCTGCAAGAGGTCCTTCAGGTGAGGAGATTTTTGCAACCATTATAATAACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAGGAAAGTGAGACACTGACAGAACAG tagacaatacaattattccacaacttataattctgcatctgtctgcacagcTACAAGACATTCTTACCAAAGTGTGTTCGAGCCAAGATCCAAGACTATCACATTCTAACCCGGAAGCGAATCAGGTACAGATTTCGCAGATTCATTCAGCAATTCAGTCAATGTAAAGCTACTTCCAGGAACCTAAAACTTAAGTATCTTATAAACCTCGAAACCCTGCAGTCTGCCTTCTACACAGAACAGTTTGAAATACAAGAGTCTGCAAGAGGTCCCTCGGGTGAGGAGATTTTTGCAACCATTATAATAACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAGGAAAGTGAGACATTGACAGAACAGgtgaggcaaatgtcttggtttcttcgtctatgcataaaacttccataaaa Alignment from CESAR cTACAAGACATTCTTACCAAAGTGCGTTCGAGCGAAGATCCAAGACTATCACATTTTAACCCGGAAGCGAATCAGGTACAGATTTCGCAGATTCATTCAGCAATTCAGTCAATGTAAAGCCACTGCCAGGAACCTAAAACTTAAGTATCTTATAAACCTGGAAACCCTGCAGTCTGCCTTCTACACAGAACAGTTTGAAGTAAAAGAATCTGCAAGAGGTCCTTCAGGTGAGGAGATTTTTGCAACCATTATAATAACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAGGAAAGTGAGACACTGACAGAACAG tagacaatacaattattccacaacttataattctgcatctgtctgcacagcTACAAGACATTCTTACCAAAGTGTGTTCGAGCCAAGATCCAAGACTATCACATTCTAACCCGGAAGCGAATCAGGTACAGATTTCGCAGATTCATTCAGCAATTCAGTCAATGTAAAGCTACTTCCAGGAACCTAAAACTTAAGTATCTTATAAACCTCGAAACCCTGCAGTCTGCCTTCTACACAGAACAGTTTGAAATACAAGAGTCTGCAAGAGGTCCCTCGGGTGAGGAGATTTTTGCAACCATTATAATAACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAGGAAAGTGAGACATTGACAGAACAGgtgaggcaaatgtcttggtttcttcgtctatgcataaaacttccataaaa Alignment from Spaln_aa2Genome CTACAAGACATTCTTACCAAAGTGCGTTCGAGCGAAGATCCAAGACTATCACATTTTAACCCGGAAGCGAATCAGGTACAGATTTCGCAGATTCATTCAGCAATTCAGTCAATGTAAAGCCACTGCCAGGAACCTAAAACTTAAGTATCTTATAAACCTGGAAACCCTGCAGTCTGCCTTCTACACAGAACAGTTTGAAGTAAAAGAATCTGCAAGAGGTCCTTCAGGTGAGGAGATTTTTGCAACCATTATAATAACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAGGAAAGTGAGACACTGACAGAACAG tagacaatacaattattccacaacttataattctgcatctgtctgcacagCTACAAGACATTCTTACCAAAGTGTGTTCGAGCCAAGATCCAAGACTATCACATTCTAACCCGGAAGCGAATCAGGTACAGATTTCGCAGATTCATTCAGCAATTCAGTCAATGTAAAGCTACTTCCAGGAACCTAAAACTTAAGTATCTTATAAACCTCGAAACCCTGCAGTCTGCCTTCTACACAGAACAGTTTGAAATACAAGAGTCTGCAAGAGGTCCCTCGGGTGAGGAGATTTTTGCAACCATTATAATAACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAGGAAAGTGAGACATTGACAGAACAGgtgaggcaaatgtcttggtttcttcgtctatgcataaaacttccataaaa Alignment from Spaln_nt2Genome CTACAAGACATTCTTACCAAAGTGCGTTCGAGCGAAGATCCAAGACTATCACATTTTAACCCGGAAGCGAATCAGGTACAGATTTCGCAGATTCATTCAGCAATTCAGTCAATGTAAAGCCACTGCCAGGAACCTAAAACTTAAGTATCTTATAAACCTGGAAACCCTGCAGTCTGCCTTCTACACAGAACAGTTTGAAGTAAAAGAATCTGCAAGAGGTCCTTCAGGTGAGGAGATTTTTGCAACCATTATAATAACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAGGAAAGTGAGACACTGACAGAACAG tagacaatacaattattccacaacttataattctgcatctgtctgcacagCTACAAGACATTCTTACCAAAGTGTGTTCGAGCCAAGATCCAAGACTATCACATTCTAACCCGGAAGCGAATCAGGTACAGATTTCGCAGATTCATTCAGCAATTCAGTCAATGTAAAGCTACTTCCAGGAACCTAAAACTTAAGTATCTTATAAACCTCGAAACCCTGCAGTCTGCCTTCTACACAGAACAGTTTGAAATACAAGAGTCTGCAAGAGGTCCCTCGGGTGAGGAGATTTTTGCAACCATTATAATAACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAGGAAAGTGAGACATTGACAGAACAGgtgaggcaaatgtcttggtttcttcgtctatgcataaaacttccataaaa Alignment from Pairagon CTACAAGACATTCTTACCAAAGTGCGTTCGAGCGAAGATCCAAGACTATCACATTTTAACCCGGAAGCGAATCAGGTACAGATTTCGCAGATTCATTCAGCAATTCAGTCAATGTAAAGCCACTGCCAGGAACCTAAAACTTAAGTATCTTATAAACCTGGAAACCCTGCAGTCTGCCTTCTACACAGAACAGTTTGAAGTAAAAGAATCTGCAAGAGGTCCTTCAGGTGAGGAGATTTTTGCAACCATTATAATAACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAGGAAAGTGAGACACTGACAGAACAG tagacaatacaattattccacaacttataattctgcatctgtctgcacagCTACAAGACATTCTTACCAAAGTGTGTTCGAGCCAAGATCCAAGACTATCACATTCTAACCCGGAAGCGAATCAGGTACAGATTTCGCAGATTCATTCAGCAATTCAGTCAATGTAAAGCTACTTCCAGGAACCTAAAACTTAAGTATCTTATAAACCTCGAAACCCTGCAGTCTGCCTTCTACACAGAACAGTTTGAAATACAAGAGTCTGCAAGAGGTCCCTCGGGTGAGGAGATTTTTGCAACCATTATAATAACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAGGAAAGTGAGACATTGACAGAACAGgtgaggcaaatgtcttggtttcttcgtctatgcataaaacttccataaaa Alignment from Exonerate_protein2genome CTACAAGACATTCTTACCAAAGTGCGTTCGAGCGAAGATCCAAGACTATCACATTTTAACCCGGAAGCGAATCAGGTACAGATTTCGCAGATTCATTCAGCAATTCAGTCAATGTAAAGCCACTGCCAGGAACCTAAAACTTAAGTATCTTATAAACCTGGAAACCCTGCAGTCTGCCTTCTACACAGAACAGTTTGAAGTAAAAGAATCTGCAAGAGGTCCTTCAGGTGAGGAGATTTTTGCAACCATTATAATAACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAGGAAAGTGAGACACTGACAGAACAG tagacaatacaattattccacaacttataattctgcatctgtctgcacagCTACAAGACATTCTTACCAAAGTGTGTTCGAGCCAAGATCCAAGACTATCACATTCTAACCCGGAAGCGAATCAGGTACAGATTTCGCAGATTCATTCAGCAATTCAGTCAATGTAAAGCTACTTCCAGGAACCTAAAACTTAAGTATCTTATAAACCTCGAAACCCTGCAGTCTGCCTTCTACACAGAACAGTTTGAAATACAAGAGTCTGCAAGAGGTCCCTCGGGTGAGGAGATTTTTGCAACCATTATAATAACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAGGAAAGTGAGACATTGACAGAACAGgtgaggcaaatgtcttggtttcttcgtctatgcataaaacttccataaaa Alignment from Exonerate_coding2genome CTACAAGACATTCTTACCAAAGTGCGTTCGAGCGAAGATCCAAGACTATCACATTTTAACCCGGAAGCGAATCAGGTACAGATTTCGCAGATTCATTCAGCAATTCAGTCAATGTAAAGCCACTGCCAGGAACCTAAAACTTAAGTATCTTATAAACCTGGAAACCCTGCAGTCTGCCTTCTACACAGAACAGTTTGAAGTAAAAGAATCTGCAAGAGGTCCTTCAGGTGAGGAGATTTTTGCAACCATTATAATAACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAGGAAAGTGAGACACTGACAGAACAG tagacaatacaattattccacaacttataattctgcatctgtctgcacagCTACAAGACATTCTTACCAAAGTGTGTTCGAGCCAAGATCCAAGACTATCACATTCTAACCCGGAAGCGAATCAGGTACAGATTTCGCAGATTCATTCAGCAATTCAGTCAATGTAAAGCTACTTCCAGGAACCTAAAACTTAAGTATCTTATAAACCTCGAAACCCTGCAGTCTGCCTTCTACACAGAACAGTTTGAAATACAAGAGTCTGCAAGAGGTCCCTCGGGTGAGGAGATTTTTGCAACCATTATAATAACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAGGAAAGTGAGACATTGACAGAACAGgtgaggcaaatgtcttggtttcttcgtctatgcataaaacttccataaaa Alignment from GeneWise CTACAAGACATTCTTACCAAAGTGCGTTCGAGCGAAGATCCAAGACTATCACATTTTAACCCGGAAGCGAATCAGGTACAGATTTCGCAGATTCATTCAGCAATTCAGTCAATGTAAAGCCACTGCCAGGAACCTAAAACTTAAGTATCTTATAAACCTGGAAACCCTGCAGTCTGCCTTCTACACAGAACAGTTTGAAGTAAAAGAATCTGCAAGAGGTCCTTCAGGTGAGGAGATTTTTGCAACCATTATAATAACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAGGAAAGTGAGACACTGACAGAACAG tagacaatacaattattccacaacttataattctgcatctgtctgcacagCTACAAGACATTCTTACCAAAGTGTGTTCGAGCCAAGATCCAAGACTATCACATTCTAACCCGGAAGCGAATCAGGTACAGATTTCGCAGATTCATTCAGCAATTCAGTCAATGTAAAGCTACTTCCAGGAACCTAAAACTTAAGTATCTTATAAACCTCGAAACCCTGCAGTCTGCCTTCTACACAGAACAGTTTGAAATACAAGAGTCTGCAAGAGGTCCCTCGGGTGAGGAGATTTTTGCAACCATTATAATAACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAGGAAAGTGAGACATTGACAGAACAGgtgaggcaaatgtcttggtttcttcgtctatgcataaaacttccataaaa #### Jak2_ID6236_12 --> 0 - 1 Original Alignment TCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGTGTCTGTGTCTGTGGAGAGGAGa tcactgaaagttaggctgtaattatttagacttctgctccttggttacagTCTTTCTTTGAAGCAGCAAGTATGATGACTCAGCTTTCTCATGAACATTTGGTTTTAAATTATGGTGTCTGTGTTTGTGGCGAGGAGagtaagcatgcaggagacagtagacacactcagcatacgctcagatgaagc Alignment from CESAR TCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGTGTCTGTGTCTGTGGAGAGGAGa tcactgaaagttaggctgtaattatttagacttctgctccttggttacagTCTTTCTTTGAAGCAGCAAGTATGATGACTCAGCTTTCTCATGAACATTTGGTTTTAAATTATGGTGTCTGTGTTTGTGGCGAGGAGagtaagcatgcaggagacagtagacacactcagcatacgctcagatgaagc Alignment from Spaln_aa2Genome TCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGTGTCTGTGTCTGTGGAGAGGAGA tcactgaaagttaggctgtaattatttagacttctgctccttggttacagTCTTTCTTTGAAGCAGCAAGTATGATGACTCAGCTTTCTCATGAACATTTGGTTTTAAATTATGGTGTCTGTGTTTGTGGCGAGGAGAgtaagcatgcaggagacagtagacacactcagcatacgctcagatgaagc Alignment from Spaln_nt2Genome TCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGTGTCTGTGTCTGTGGAGAGGAGA tcactgaaagttaggctgtaattatttagacttctgctccttggttacagTCTTTCTTTGAAGCAGCAAGTATGATGACTCAGCTTTCTCATGAACATTTGGTTTTAAATTATGGTGTCTGTGTTTGTGGCGAGGAGAgtaagcatgcaggagacagtagacacactcagcatacgctcagatgaagc Alignment from Pairagon TCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGTGTCTGTGTCTGTGGAGAGGAGA tcactgaaagttaggctgtaattatttagacttctgctccttggttacagTCTTTCTTTGAAGCAGCAAGTATGATGACTCAGCTTTCTCATGAACATTTGGTTTTAAATTATGGTGTCTGTGTTTGTGGCGAGGAGAgtaagcatgcaggagacagtagacacactcagcatacgctcagatgaagc Alignment from Exonerate_protein2genome TCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGTGTCTGTGTCTGTGGAGAGGAGA tcactgaaagttaggctgtaattatttagacttctgctccttggttacagTCTTTCTTTGAAGCAGCAAGTATGATGACTCAGCTTTCTCATGAACATTTGGTTTTAAATTATGGTGTCTGTGTTTGTGGCGAGGAGAgtaagcatgcaggagacagtagacacactcagcatacgctcagatgaagc Alignment from Exonerate_coding2genome TCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGTGTCTGTGTCTGTGGAGAGGAGA tcactgaaagttaggctgtaattatttagacttctgctccttggttacagTCTTTCTTTGAAGCAGCAAGTATGATGACTCAGCTTTCTCATGAACATTTGGTTTTAAATTATGGTGTCTGTGTTTGTGGCGAGGAGAgtaagcatgcaggagacagtagacacactcagcatacgctcagatgaagc Alignment from GeneWise TCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGTGTCTGTGTCTGTGGAGAGGAGA tcactgaaagttaggctgtaattatttagacttctgctccttggttacagTCTTTCTTTGAAGCAGCAAGTATGATGACTCAGCTTTCTCATGAACATTTGGTTTTAAATTATGGTGTCTGTGTTTGTGGCGAGGAGAgtaagcatgcaggagacagtagacacactcagcatacgctcagatgaagc #### Jak2_ID6238_14 --> 0 - 1 Original Alignment GAAGAAAAATCCCTTATTCATGGGAATGTGTGTGCTAAAAATATCCTGCTTATCAGAGAAGAAGACAGGAGAACGGGGAACCCACCTTTCATCAAACTTAGTGATCCTGGCATTAGCATTACAGTTCTACCGAAGGACa caacatcccaccatatgaaataaatgataagcactcttatctgtctgcagGAAGAAAAATTCCTCATTCATGGCAATGTGTGTGCCAAAAATATCCTGCTTATCAGAGAAGAAGACAGGAGAACAGGGAACCCACCCTTCATCAAACTTAGTGATCCTGGCATTAGCATCACTGTCCTATCGAATGACagtgagtctgcacacttacatctgtatcctgtaatctcaatccaacagttt Alignment from CESAR GAAGAAAAATCCCTTATTCATGGGAATGTGTGTGCTAAAAATATCCTGCTTATCAGAGAAGAAGACAGGAGAACGGGGAACCCACCTTTCATCAAACTTAGTGATCCTGGCATTAGCATTACAGTTCTACCGAAGGACa caacatcccaccatatgaaataaatgataagcactcttatctgtctgcagGAAGAAAAATTCCTCATTCATGGCAATGTGTGTGCCAAAAATATCCTGCTTATCAGAGAAGAAGACAGGAGAACAGGGAACCCACCCTTCATCAAACTTAGTGATCCTGGCATTAGCATCACTGTCCTATCGAATGACagtgagtctgcacacttacatctgtatcctgtaatctcaatccaacagttt Alignment from Spaln_aa2Genome GAAGAAAAATCCCTTATTCATGGGAATGTGTGTGCTAAAAATATCCTGCTTATCAGAGAAGAAGACAGGAGAACGGGGAACCCACCTTTCATCAAACTTAGTGATCCTGGCATTAGCATTACAGTTCTACCGAAGGACA caacatcccaccatatgaaataaatgataagcactcttatctgtctgcagGAAGAAAAATTCCTCATTCATGGCAATGTGTGTGCCAAAAATATCCTGCTTATCAGAGAAGAAGACAGGAGAACAGGGAACCCACCCTTCATCAAACTTAGTGATCCTGGCATTAGCATCACTGTCCTATCGAATGACAgtgagtctgcacacttacatctgtatcctgtaatctcaatccaacagttt Alignment from Spaln_nt2Genome GAAGAAAAATCCCTTATTCATGGGAATGTGTGTGCTAAAAATATCCTGCTTATCAGAGAAGAAGACAGGAGAACGGGGAACCCACCTTTCATCAAACTTAGTGATCCTGGCATTAGCATTACAGTTCTACCGAAGGACA caacatcccaccatatgaaataaatgataagcactcttatctgtctgcagGAAGAAAAATTCCTCATTCATGGCAATGTGTGTGCCAAAAATATCCTGCTTATCAGAGAAGAAGACAGGAGAACAGGGAACCCACCCTTCATCAAACTTAGTGATCCTGGCATTAGCATCACTGTCCTATCGAATGACAgtgagtctgcacacttacatctgtatcctgtaatctcaatccaacagttt Alignment from Pairagon GAAGAAAAATCCCTTATTCATGGGAATGTGTGTGCTAAAAATATCCTGCTTATCAGAGAAGAAGACAGGAGAACGGGGAACCCACCTTTCATCAAACTTAGTGATCCTGGCATTAGCATTACAGTTCTACCGAAGGACA caacatcccaccatatgaaataaatgataagcactcttatctgtctgcagGAAGAAAAATTCCTCATTCATGGCAATGTGTGTGCCAAAAATATCCTGCTTATCAGAGAAGAAGACAGGAGAACAGGGAACCCACCCTTCATCAAACTTAGTGATCCTGGCATTAGCATCACTGTCCTATCGAATGACAgtgagtctgcacacttacatctgtatcctgtaatctcaatccaacagttt Alignment from Exonerate_protein2genome GAAGAAAAATCCCTTATTCATGGGAATGTGTGTGCTAAAAATATCCTGCTTATCAGAGAAGAAGACAGGAGAACGGGGAACCCACCTTTCATCAAACTTAGTGATCCTGGCATTAGCATTACAGTTCTACCGAAGGACA caacatcccaccatatgaaataaatgataagcactcttatctgtctgcagGAAGAAAAATTCCTCATTCATGGCAATGTGTGTGCCAAAAATATCCTGCTTATCAGAGAAGAAGACAGGAGAACAGGGAACCCACCCTTCATCAAACTTAGTGATCCTGGCATTAGCATCACTGTCCTATCGAATGACAgtgagtctgcacacttacatctgtatcctgtaatctcaatccaacagttt Alignment from Exonerate_coding2genome GAAGAAAAATCCCTTATTCATGGGAATGTGTGTGCTAAAAATATCCTGCTTATCAGAGAAGAAGACAGGAGAACGGGGAACCCACCTTTCATCAAACTTAGTGATCCTGGCATTAGCATTACAGTTCTACCGAAGGACA caacatcccaccatatgaaataaatgataagcactcttatctgtctgcagGAAGAAAAATTCCTCATTCATGGCAATGTGTGTGCCAAAAATATCCTGCTTATCAGAGAAGAAGACAGGAGAACAGGGAACCCACCCTTCATCAAACTTAGTGATCCTGGCATTAGCATCACTGTCCTATCGAATGACAgtgagtctgcacacttacatctgtatcctgtaatctcaatccaacagttt Alignment from GeneWise GAAGAAAAATCCCTTATTCATGGGAATGTGTGTGCTAAAAATATCCTGCTTATCAGAGAAGAAGACAGGAGAACGGGGAACCCACCTTTCATCAAACTTAGTGATCCTGGCATTAGCATTACAGTTCTACCGAAGGACA caacatcccaccatatgaaataaatgataagcactcttatctgtctgcagGAAGAAAAATTCCTCATTCATGGCAATGTGTGTGCCAAAAATATCCTGCTTATCAGAGAAGAAGACAGGAGAACAGGGAACCCACCCTTCATCAAACTTAGTGATCCTGGCATTAGCATCACTGTCCTATCGAATGACAgtgagtctgcacacttacatctgtatcctgtaatctcaatccaacagttt #### Jak2_ID6246_22 --> 0 - 0 Original Alignment GAATTTATGCGAATGATTGGCAATGATAAACAAGGGCAAATGATTGTGTTCCATTTGATAGAGCTACTGAAGAGCAACGGAAGATTGCCAAGGCCAGAAGGATGCCCAGATGAG tatatgcactaaatcccaagtgggagtccacttatgttttctttgtttagGAGTTTATGCGAATGATTGGTAACGATAAACAAGGACAAATGATTGTGTTCCACTTGATTGAGCTGCTGAAGAGCAATGGAAGATTGCCAAGGCCAGAGGGATGCCCAGATGAGgtgaggaaactctcctagtgctatatcccacacatggcatatagactcag Alignment from CESAR GAATTTATGCGAATGATTGGCAATGATAAACAAGGGCAAATGATTGTGTTCCATTTGATAGAGCTACTGAAGAGCAACGGAAGATTGCCAAGGCCAGAAGGATGCCCAGATGAG tatatgcactaaatcccaagtgggagtccacttatgttttctttgtttagGAGTTTATGCGAATGATTGGTAACGATAAACAAGGACAAATGATTGTGTTCCACTTGATTGAGCTGCTGAAGAGCAATGGAAGATTGCCAAGGCCAGAGGGATGCCCAGATGAGgtgaggaaactctcctagtgctatatcccacacatggcatatagactcag Alignment from Spaln_aa2Genome GAATTTATGCGAATGATTGGCAATGATAAACAAGGGCAAATGATTGTGTTCCATTTGATAGAGCTACTGAAGAGCAACGGAAGATTGCCAAGGCCAGAAGGATGCCCAGATGAG tatatgcactaaatcccaagtgggagtccacttatgttttctttgtttagGAGTTTATGCGAATGATTGGTAACGATAAACAAGGACAAATGATTGTGTTCCACTTGATTGAGCTGCTGAAGAGCAATGGAAGATTGCCAAGGCCAGAGGGATGCCCAGATGAGgtgaggaaactctcctagtgctatatcccacacatggcatatagactcag Alignment from Spaln_nt2Genome GAATTTATGCGAATGATTGGCAATGATAAACAAGGGCAAATGATTGTGTTCCATTTGATAGAGCTACTGAAGAGCAACGGAAGATTGCCAAGGCCAGAAGGATGCCCAGATGAG tatatgcactaaatcccaagtgggagtccacttatgttttctttgtttagGAGTTTATGCGAATGATTGGTAACGATAAACAAGGACAAATGATTGTGTTCCACTTGATTGAGCTGCTGAAGAGCAATGGAAGATTGCCAAGGCCAGAGGGATGCCCAGATGAGgtgaggaaactctcctagtgctatatcccacacatggcatatagactcag Alignment from Pairagon GAATTTATGCGAATGATTGGCAATGATAAACAAGGGCAAATGATTGTGTTCCATTTGATAGAGCTACTGAAGAGCAACGGAAGATTGCCAAGGCCAGAAGGATGCCCAGATGAG tatatgcactaaatcccaagtgggagtccacttatgttttctttgtttagGAGTTTATGCGAATGATTGGTAACGATAAACAAGGACAAATGATTGTGTTCCACTTGATTGAGCTGCTGAAGAGCAATGGAAGATTGCCAAGGCCAGAGGGATGCCCAGATGAGgtgaggaaactctcctagtgctatatcccacacatggcatatagactcag Alignment from Exonerate_protein2genome GAATTTATGCGAATGATTGGCAATGATAAACAAGGGCAAATGATTGTGTTCCATTTGATAGAGCTACTGAAGAGCAACGGAAGATTGCCAAGGCCAGAAGGATGCCCAGATGAG tatatgcactaaatcccaagtgggagtccacttatgttttctttgtttagGAGTTTATGCGAATGATTGGTAACGATAAACAAGGACAAATGATTGTGTTCCACTTGATTGAGCTGCTGAAGAGCAATGGAAGATTGCCAAGGCCAGAGGGATGCCCAGATGAGgtgaggaaactctcctagtgctatatcccacacatggcatatagactcag Alignment from Exonerate_coding2genome GAATTTATGCGAATGATTGGCAATGATAAACAAGGGCAAATGATTGTGTTCCATTTGATAGAGCTACTGAAGAGCAACGGAAGATTGCCAAGGCCAGAAGGATGCCCAGATGAG tatatgcactaaatcccaagtgggagtccacttatgttttctttgtttagGAGTTTATGCGAATGATTGGTAACGATAAACAAGGACAAATGATTGTGTTCCACTTGATTGAGCTGCTGAAGAGCAATGGAAGATTGCCAAGGCCAGAGGGATGCCCAGATGAGgtgaggaaactctcctagtgctatatcccacacatggcatatagactcag Alignment from GeneWise GAATTTATGCGAATGATTGGCAATGATAAACAAGGGCAAATGATTGTGTTCCATTTGATAGAGCTACTGAAGAGCAACGGAAGATTGCCAAGGCCAGAAGGATGCCCAGATGAG tatatgcactaaatcccaagtgggagtccacttatgttttctttgtttagGAGTTTATGCGAATGATTGGTAACGATAAACAAGGACAAATGATTGTGTTCCACTTGATTGAGCTGCTGAAGAGCAATGGAAGATTGCCAAGGCCAGAGGGATGCCCAGATGAGgtgaggaaactctcctagtgctatatcccacacatggcatatagactcag #### Kat5_ID1118_4 --> 2 - 0 Original Alignment tcAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG agattagaaaatctacaccattcccctctttctttcttttttgtcttcagtcAACAAACGTCTGGATGAG---TTAACCCATGAGAGGCTGGACTTACCAAAAATACAACTGCCTAAAAAAGAGGCTCAGACACCCACCAAGAATGGACTCCCCGGGTCCCACCCAGGCTCCCCCAAAAGGGAGGTGgttggcgctaagagtgtactccaactttcctattggtgctaccataaact Alignment from CESAR tcAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG agattagaaaatctacaccattcccctctttctttcttttttgtcttcagtcAACAAACGTCTGGATGAG---TTAACCCATGAGAGGCTGGACTTACCAAAAATACAACTGCCTAAAAAAGAGGCTCAGACACCCACCAAGAATGGACTCCCCGGGTCCCACCCAGGCTCCCCCAAAAGGGAGGTGgttggcgctaagagtgtactccaactttcctattggtgctaccataaact Alignment from Spaln_aa2Genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG agattagaaaatctacaccattcccctctttctttcttttttgtcttcagTCAACAAACGTCTGGATGAG---TTAACCCATGAGAGGCTGGACTTACCAAAAATACAACTGCCTAAAAAAGAGGCTCAGACACCCACCAAGAATGGACTCCCCGGGTCCCACCCAGGCTCCCCCAAAAGGGAGGTGgttggcgctaagagtgtactccaactttcctattggtgctaccataaact Alignment from Spaln_nt2Genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG agattagaaaatctacaccattcccctctttctttcttttttgtcttcagTCAACAAACGTCTGGATGA---GTTAACCCATGAGAGGCTGGACTTACCAAAAATACAACTGCCTAAAAAAGAGGCTCAGACACCCACCAAGAATGGACTCCCCGGGTCCCACCCAGGCTCCCCCAAAAGGGAGGTGgttggcgctaagagtgtactccaactttcctattggtgctaccataaact Alignment from Pairagon TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG agattagaaaatctacaccattcccctctttctttcttttttgtcttcagTCAACAAACGTCTGGATGAGT---TAACCCATGAGAGGCTGGACTTACCAAAAATACAACTGCCTAAAAAAGAGGCTCAGACACCCACCAAGAATGGACTCCCCGGGTCCCACCCAGGCTCCCCCAAAAGGGAGGTGgttggcgctaagagtgtactccaactttcctattggtgctaccataaact Alignment from Exonerate_protein2genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG agattagaaaatctacaccattcccctctttctttcttttttgtcttcagTCAACAAACGTCTGGATGAG---TTAACCCATGAGAGGCTGGACTTACCAAAAATACAACTGCCTAAAAAAGAGGCTCAGACACCCACCAAGAATGGACTCCCCGGGTCCCACCCAGGCTCCCCCAAAAGGGAGGTGgttggcgctaagagtgtactccaactttcctattggtgctaccataaact Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG agattagaaaatctacaccattcccctctttctttcttttttgtcttcagTCAACAAACGTCTGGATGAG---TTAACCCATGAGAGGCTGGACTTACCAAAAATACAACTGCCTAAAAAAGAGGCTCAGACACCCACCAAGAATGGACTCCCCGGGTCCCACCCAGGCTCCCCCAAAAGGGAGGTGgttggcgctaagagtgtactccaactttcctattggtgctaccataaact #### Kat5_ID1119_3 --> 2 - 1 Original Alignment ccCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACt tactccagactggccccaatctctaaacattatagtctgtttactcacagcaTTGGCTGAGATCCTAAGTGTGAAGGACATTAGTGGCAGAAAGCTTTTCTATGTTTACTACATTGACtgtgagtcaagccacactagaagatggttactcttgaagattagaaaatct Alignment from CESAR ccCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACt tactccagactggccccaatctctaaacattatagtctgtttactcacagcaTTGGCTGAGATCCTAAGTGTGAAGGACATTAGTGGCAGAAAGCTTTTCTATGTTTACTACATTGACtgtgagtcaagccacactagaagatggttactcttgaagattagaaaatct Alignment from Spaln_aa2Genome CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT tactccagactggccccaatctctaaacattatagtctgtttactcacagCATTGGCTGAGATCCTAAGTGTGAAGGACATTAGTGGCAGAAAGCTTTTCTATGTTTACTACATTGACTgtgagtcaagccacactagaagatggttactcttgaagattagaaaatct Alignment from Spaln_nt2Genome CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT tactccagactggccccaatctctaaacattatagtctgtttactcacagCATTGGCTGAGATCCTAAGTGTGAAGGACATTAGTGGCAGAAAGCTTTTCTATGTTTACTACATTGACTgtgagtcaagccacactagaagatggttactcttgaagattagaaaatct Alignment from Pairagon CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT tactccagactggccccaatctctaaacattatagtctgtttactcacagCATTGGCTGAGATCCTAAGTGTGAAGGACATTAGTGGCAGAAAGCTTTTCTATGTTTACTACATTGACTgtgagtcaagccacactagaagatggttactcttgaagattagaaaatct Alignment from Exonerate_protein2genome CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT tactccagactggccccaatctctaaacattatagtctgtttactcacagCATTGGCTGAGATCCTAAGTGTGAAGGACATTAGTGGCAGAAAGCTTTTCTATGTTTACTACATTGACTgtgagtcaagccacactagaagatggttactcttgaagattagaaaatct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT tactccagactggccccaatctctaaacattatagtctgtttactcacagCATTGGCTGAGATCCTAAGTGTGAAGGACATTAGTGGCAGAAAGCTTTTCTATGTTTACTACATTGACTgtgagtcaagccacactagaagatggttactcttgaagattagaaaatct #### Kazald1_ID9300_2 --> 2 - 0 Original Alignment agCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGTGGAGGAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGACCCTCATATCTCTGTGCAG gtccaacatgctgaggcgtctgcattctcagcccaccctgccgcccccagagTCACAGATTCTATCACAGACTCAAAATATTTGGAATGTGACTGGACAAGATGTAATCTTTGGCTGTGAGGTGTCTGCCTACCCGATGACTTTGATT---------------GGCTTTGGCATTCAGCTGCCAGGTGATGACCCTCACATCTCCTTGCAGgtgagccacagggttattgcccacagagttatgggcttgctctcctcccc Alignment from CESAR agCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGTGGAGGAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGACCCTCATATCTCTGTGCAG gtccaacatgctgaggcgtctgcattctcagcccaccctgccgcccccagagTCACAGATTCTATCACAGACTCAAAATATTTGGAATGTGACTGGACAAGATGTAATCTTTGGCTGTGAGGTGTCTGCCTACCCGATGACTTTGATT---------------GGCTTTGGCATTCAGCTGCCAGGTGATGACCCTCACATCTCCTTGCAGgtgagccacagggttattgcccacagagttatgggtccttttggtctcca Alignment from Spaln_aa2Genome AGCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGTGGAGGAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGACCCTCATATCTCTGTGCAG gtccaacatgctgaggcgtctgcattctcagcccaccctgccgcccccagAGTCACAGATTCTATCACAGACTCAAAATATTTGGAATGTGACTGGACAAGATGTAATCTTTGGCTGTGAGGTGTCTGCCTACCCGATGACTTTGATT---------------GGCTTTGGCATTCAGCTGCCAGGTGATGACCCTCACATCTCCTTGCAGgtgagccacagggttattgcccacagagttatgggcttgctctcctcccc Alignment from Spaln_nt2Genome AGCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGTGGAGGAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGACCCTCATATCTCTGTGCAG gtccaacatgctgaggcgtctgcattctcagcccaccctgccgcccccagAGTCACAGATTCTATCACAGACTCAAAATATTTGGAATGTGACTGGACAAGATGTAATCTTTGGCTGTGAGGTGTCTGCCTACCCGATGACTTTGAT---------------TGGCTTTGGCATTCAGCTGCCAGGTGATGACCCTCACATCTCCTTGCAGgtgagccacagggttattgcccacagagttatgggcttgctctcctcccc Alignment from Pairagon AGCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGTGGAGGAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGACCCTCATATCTCTGTGCAG gtccaacatgctgaggcgtctgcattctcagcccaccctgccgcccccagAGTCACAGATTCTATCACAGACTCAAAATATTTGGAATGTGACTGGACAAGATGTAATCTTTGGCTGTGAGGTGTCTGCCTACCCGATGACTTTGAT---------------TGGCTTTGGCATTCAGCTGCCAGGTGATGACCCTCACATCTCCTTGCAGgtgagccacagggttattgcccacagagttatgggcttgctctcctcccc Alignment from Exonerate_protein2genome AGCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGTGGAGGAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGACCCTCATATCTCTGTGCAG gtccaacatgctgaggcgtctgcattctcagcccaccctgccgcccccagAGTCACAGATTCTATCACAGACTCAAAATATTTGGAATGTGACTGGACAAGATGTAATCTTTGGCTGTGAGGTGTCTGCCTACCCGATGACTTTGATT---------------GGCTTTGGCATTCAGCTGCCAGGTGATGACCCTCACATCTCCTTGCAGgtgagccacagggttattgcccacagagttatgggcttgctctcctcccc Alignment from Exonerate_coding2genome AGCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGTGGAGGAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGACCCTCATATCTCTGTGCAG gtccaacatgctgaggcgtctgcattctcagcccaccctgccgcccccagAGTCACAGATTCTATCACAGACTCAAAATATTTGGAATGTGACTGGACAAGATGTAATCTTTGGCTGTGAGGTGTCTGCCTACCCGATGACTTTGATT---------------GGCTTTGGCATTCAGCTGCCAGGTGATGACCCTCACATCTCCTTGCAGgtgagccacagggttattgcccacagagttatgggcttgctctcctcccc Alignment from GeneWise AGCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGTGGAGGAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGACCCTCATATCTCTGTGCAG gtccaacatgctgaggcgtctgcattctcagcccaccctgccgcccccagAGTCACAGATTCTATCACAGACTCAAAATATTTGGAATGTGACTGGACAAGATGTAATCTTTGGCTGTGAGGTGTCTGCCTACCCGATGACTTTGATT---------------GGCTTTGGCATTCAGCTGCCAGGTGATGACCCTCACATCTCCTTGCAGgtgagccacagggttattgcccacagagttatgggcttgctctcctcccc #### Kcnip2_ID9605_7 --> 0 - 0 Original Alignment GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attgattattattcggtgtcttaaatgctcttgcttgccttacctcccagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGACAGA---TATTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAGGGAGgtattgagcatgtgacagagtatgctgaaatatgtcatcaaaaacccttg Alignment from CESAR GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attgattattattcggtgtcttaaatgctcttgcttgccttacctcccagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGACAGA---TATTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAGGGAGgtattgagcatgtgacagagtatgctgaaatatgtcatcaaaaacccttg Alignment from Spaln_aa2Genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attgattattattcggtgtcttaaatgctcttgcttgccttacctcccagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGACAGA---TATTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAGGGAGgtattgagcatgtgacagagtatgctgaaatatgtcatcaaaaacccttg Alignment from Spaln_nt2Genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attgattattattcggtgtcttaaatgctcttgcttgccttacctcccagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGACAGA---TATTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAGGGAGgtattgagcatgtgacagagtatgctgaaatatgtcatcaaaaacccttg Alignment from Pairagon GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attgattattattcggtgtcttaaatgctcttgcttgccttacctcccagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGACAGAT---ATTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAGGGAGgtattgagcatgtgacagagtatgctgaaatatgtcatcaaaaacccttg Alignment from Exonerate_protein2genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attgattattattcggtgtcttaaatgctcttgcttgccttacctcccagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGACAGATAT---TGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAGGGAGgtattgagcatgtgacagagtatgctgaaatatgtcatcaaaaacccttg Alignment from Exonerate_coding2genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attgattattattcggtgtcttaaatgctcttgcttgccttacctcccagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGACAGATAT---TGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAGGGAGgtattgagcatgtgacagagtatgctgaaatatgtcatcaaaaacccttg Alignment from GeneWise GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attgattattattcggtgtcttaaatgctcttgcttgccttacctcccagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGACAGATAT---TGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAGGGAGgtattgagcatgtgacagagtatgctgaaatatgtcatcaaaaacccttg #### Kcnk7_ID1212_2 --> 2 - 1 Original Alignment gtTATGGCCACATGGCCCCACTCTCCTCAGGTGGAAAGGCCTTCTGTGTGGTCTATGCAGCCCTTGGGCTGCCAGCCTCTCTAGCA---------CTTGTGGCTGCCCTGCGCCACTGCTTGCTGCCTGTGTTCAGTCGCCCAGGTGACTGGGTAGCCATTCGCTGGCAGCTGGCACCAGCTCAGGCTGCTCTGCTACAGGCAGCAGGACTGGGCCTCCTGGTGGCCTGTGTCTTCATGCTGCTGCCAGCACTGGTGCTGTGGGGTGTACAGGGTGACTGCAGCCTGCTAGAAGCCATCTACTTCTGTTTCGGCTCACTCAGCACGATCGGCCTAGGAGACTTGCTGCCTGCCCATGGACGTGGCCTGCACCCAGCCATTTACCACCTTGGGCAGTTTGCACTTCTTg aagagcctaatccatggctactacttactttcctctttattttgtttcagggTATGGTCACATGGCCCCATTATCCTCAGGTGGAAAGGCCTTCTGTGTGGTTTATACAGCCCTTGGGCTGCCGGCCTCTATAGCACTTGTGGCTGCTGTCACAACTTTGCGTCACTGTCTACTGCGTGTGTTTAGCCACCCAGGTGATTGGATTGCCATTCACTGGCAGTTGGCACCAGTCAATGCTGCTCTCCTCCAGGCTGCAGGACTGAGTCTTCTGGTGGCCTATGTCTTCATGCTGTTGCCTGCACTGGTCTTGTTAGGTGTTCAGGGGGACTGCAGCCTTTTGGAGGCCATTTATTACTGCTATGGCTCACTTAGCATGATTGGTCTAGGAGATCTGCTCCCTGCCCATGGATGTGGCTTACACCCCACTATTTACCATCTAGGGCAGTTTGCACTACTTggtgagtacagttatgaaattttgggagggtaatctactcacggaccaatg Alignment from CESAR gtTATGGCCACATGGCCCCACTCTCCTCAGGTGGAAAGGCCTTCTGTGTGGTCTATGCAGCCCTTGGGCTGCCAGCCTCTCTAGCACTTGTGGCTGCC---------CTGCGCCACTGCTTGCTGCCTGTGTTCAGTCGCCCAGGTGACTGGGTAGCCATTCGCTGGCAGCTGGCACCAGCTCAGGCTGCTCTGCTACAGGCAGCAGGACTGGGCCTCCTGGTGGCCTGTGTCTTCATGCTGCTGCCAGCACTGGTGCTGTGGGGTGTACAGGGTGACTGCAGCCTGCTAGAAGCCATCTACTTCTGTTTCGGCTCACTCAGCACGATCGGCCTAGGAGACTTGCTGCCTGCCCATGGACGTGGCCTGCACCCAGCCATTTACCACCTTGGGCAGTTTGCACTTCTTg aagagcctaatccatggctactacttactttcctctttattttgtttcagggTATGGTCACATGGCCCCATTATCCTCAGGTGGAAAGGCCTTCTGTGTGGTTTATACAGCCCTTGGGCTGCCGGCCTCTATAGCACTTGTGGCTGCTGTCACAACTTTGCGTCACTGTCTACTGCGTGTGTTTAGCCACCCAGGTGATTGGATTGCCATTCACTGGCAGTTGGCACCAGTCAATGCTGCTCTCCTCCAGGCTGCAGGACTGAGTCTTCTGGTGGCCTATGTCTTCATGCTGTTGCCTGCACTGGTCTTGTTAGGTGTTCAGGGGGACTGCAGCCTTTTGGAGGCCATTTATTACTGCTATGGCTCACTTAGCATGATTGGTCTAGGAGATCTGCTCCCTGCCCATGGATGTGGCTTACACCCCACTATTTACCATCTAGGGCAGTTTGCACTACTTggtgagtacagttatgaaattttgggagggtaatctactcacggaccaatg Alignment from Spaln_aa2Genome GTTATGGCCACATGGCCCCACTCTCCTCAGGTGGAAAGGCCTTCTGTGTGGTCTATGCAGCCCTTGGGCTGCCAGCCTCTCTAGCACTTGTGGCTGCC---------CTGCGCCACTGCTTGCTGCCTGTGTTCAGTCGCCCAGGTGACTGGGTAGCCATTCGCTGGCAGCTGGCACCAGCTCAGGCTGCTCTGCTACAGGCAGCAGGACTGGGCCTCCTGGTGGCCTGTGTCTTCATGCTGCTGCCAGCACTGGTGCTGTGGGGTGTACAGGGTGACTGCAGCCTGCTAGAAGCCATCTACTTCTGTTTCGGCTCACTCAGCACGATCGGCCTAGGAGACTTGCTGCCTGCCCATGGACGTGGCCTGCACCCAGCCATTTACCACCTTGGGCAGTTTGCACTTCTTG aagagcctaatccatggctactacttactttcctctttattttgtttcagGGTATGGTCACATGGCCCCATTATCCTCAGGTGGAAAGGCCTTCTGTGTGGTTTATACAGCCCTTGGGCTGCCGGCCTCTATAGCACTTGTGGCTGCTGTCACAACTTTGCGTCACTGTCTACTGCGTGTGTTTAGCCACCCAGGTGATTGGATTGCCATTCACTGGCAGTTGGCACCAGTCAATGCTGCTCTCCTCCAGGCTGCAGGACTGAGTCTTCTGGTGGCCTATGTCTTCATGCTGTTGCCTGCACTGGTCTTGTTAGGTGTTCAGGGGGACTGCAGCCTTTTGGAGGCCATTTATTACTGCTATGGCTCACTTAGCATGATTGGTCTAGGAGATCTGCTCCCTGCCCATGGATGTGGCTTACACCCCACTATTTACCATCTAGGGCAGTTTGCACTACTTGgtgagtacagttatgaaattttgggagggtaatctactcacggaccaatg Alignment from Spaln_nt2Genome GTTATGGCCACATGGCCCCACTCTCCTCAGGTGGAAAGGCCTTCTGTGTGGTCTATGCAGCCCTTGGGCTGCCAGCCTCTCTAGCACTTGTGGCTGCCCT---------GCGCCACTGCTTGCTGCCTGTGTTCAGTCGCCCAGGTGACTGGGTAGCCATTCGCTGGCAGCTGGCACCAGCTCAGGCTGCTCTGCTACAGGCAGCAGGACTGGGCCTCCTGGTGGCCTGTGTCTTCATGCTGCTGCCAGCACTGGTGCTGTGGGGTGTACAGGGTGACTGCAGCCTGCTAGAAGCCATCTACTTCTGTTTCGGCTCACTCAGCACGATCGGCCTAGGAGACTTGCTGCCTGCCCATGGACGTGGCCTGCACCCAGCCATTTACCACCTTGGGCAGTTTGCACTTCTTG aagagcctaatccatggctactacttactttcctctttattttgtttcagGGTATGGTCACATGGCCCCATTATCCTCAGGTGGAAAGGCCTTCTGTGTGGTTTATACAGCCCTTGGGCTGCCGGCCTCTATAGCACTTGTGGCTGCTGTCACAACTTTGCGTCACTGTCTACTGCGTGTGTTTAGCCACCCAGGTGATTGGATTGCCATTCACTGGCAGTTGGCACCAGTCAATGCTGCTCTCCTCCAGGCTGCAGGACTGAGTCTTCTGGTGGCCTATGTCTTCATGCTGTTGCCTGCACTGGTCTTGTTAGGTGTTCAGGGGGACTGCAGCCTTTTGGAGGCCATTTATTACTGCTATGGCTCACTTAGCATGATTGGTCTAGGAGATCTGCTCCCTGCCCATGGATGTGGCTTACACCCCACTATTTACCATCTAGGGCAGTTTGCACTACTTGgtgagtacagttatgaaattttgggagggtaatctactcacggaccaatg Alignment from Pairagon GTTATGGCCACATGGCCCCACTCTCCTCAGGTGGAAAGGCCTTCTGTGTGGTCTATGCAGCCCTTGGGCTGCCAGCCTCTCTAGCACTTGTGGCTG---------CCCTGCGCCACTGCTTGCTGCCTGTGTTCAGTCGCCCAGGTGACTGGGTAGCCATTCGCTGGCAGCTGGCACCAGCTCAGGCTGCTCTGCTACAGGCAGCAGGACTGGGCCTCCTGGTGGCCTGTGTCTTCATGCTGCTGCCAGCACTGGTGCTGTGGGGTGTACAGGGTGACTGCAGCCTGCTAGAAGCCATCTACTTCTGTTTCGGCTCACTCAGCACGATCGGCCTAGGAGACTTGCTGCCTGCCCATGGACGTGGCCTGCACCCAGCCATTTACCACCTTGGGCAGTTTGCACTTCTTG aagagcctaatccatggctactacttactttcctctttattttgtttcagGGTATGGTCACATGGCCCCATTATCCTCAGGTGGAAAGGCCTTCTGTGTGGTTTATACAGCCCTTGGGCTGCCGGCCTCTATAGCACTTGTGGCTGCTGTCACAACTTTGCGTCACTGTCTACTGCGTGTGTTTAGCCACCCAGGTGATTGGATTGCCATTCACTGGCAGTTGGCACCAGTCAATGCTGCTCTCCTCCAGGCTGCAGGACTGAGTCTTCTGGTGGCCTATGTCTTCATGCTGTTGCCTGCACTGGTCTTGTTAGGTGTTCAGGGGGACTGCAGCCTTTTGGAGGCCATTTATTACTGCTATGGCTCACTTAGCATGATTGGTCTAGGAGATCTGCTCCCTGCCCATGGATGTGGCTTACACCCCACTATTTACCATCTAGGGCAGTTTGCACTACTTGgtgagtacagttatgaaattttgggagggtaatctactcacggaccaatg Alignment from Exonerate_protein2genome GTTATGGCCACATGGCCCCACTCTCCTCAGGTGGAAAGGCCTTCTGTGTGGTCTATGCAGCCCTTGGGCTGCCAGCCTCTCTAGCACTTGTGGCTGCC---------CTGCGCCACTGCTTGCTGCCTGTGTTCAGTCGCCCAGGTGACTGGGTAGCCATTCGCTGGCAGCTGGCACCAGCTCAGGCTGCTCTGCTACAGGCAGCAGGACTGGGCCTCCTGGTGGCCTGTGTCTTCATGCTGCTGCCAGCACTGGTGCTGTGGGGTGTACAGGGTGACTGCAGCCTGCTAGAAGCCATCTACTTCTGTTTCGGCTCACTCAGCACGATCGGCCTAGGAGACTTGCTGCCTGCCCATGGACGTGGCCTGCACCCAGCCATTTACCACCTTGGGCAGTTTGCACTTCTTG aagagcctaatccatggctactacttactttcctctttattttgtttcagGGTATGGTCACATGGCCCCATTATCCTCAGGTGGAAAGGCCTTCTGTGTGGTTTATACAGCCCTTGGGCTGCCGGCCTCTATAGCACTTGTGGCTGCTGTCACAACTTTGCGTCACTGTCTACTGCGTGTGTTTAGCCACCCAGGTGATTGGATTGCCATTCACTGGCAGTTGGCACCAGTCAATGCTGCTCTCCTCCAGGCTGCAGGACTGAGTCTTCTGGTGGCCTATGTCTTCATGCTGTTGCCTGCACTGGTCTTGTTAGGTGTTCAGGGGGACTGCAGCCTTTTGGAGGCCATTTATTACTGCTATGGCTCACTTAGCATGATTGGTCTAGGAGATCTGCTCCCTGCCCATGGATGTGGCTTACACCCCACTATTTACCATCTAGGGCAGTTTGCACTACTTGgtgagtacagttatgaaattttgggagggtaatctactcacggaccaatg Alignment from Exonerate_coding2genome GTTATGGCCACATGGCCCCACTCTCCTCAGGTGGAAAGGCCTTCTGTGTGGTCTATGCAGCCCTTGGGCTGCCAGCCTCTCTAGCACTTGTGGCTGCC---------CTGCGCCACTGCTTGCTGCCTGTGTTCAGTCGCCCAGGTGACTGGGTAGCCATTCGCTGGCAGCTGGCACCAGCTCAGGCTGCTCTGCTACAGGCAGCAGGACTGGGCCTCCTGGTGGCCTGTGTCTTCATGCTGCTGCCAGCACTGGTGCTGTGGGGTGTACAGGGTGACTGCAGCCTGCTAGAAGCCATCTACTTCTGTTTCGGCTCACTCAGCACGATCGGCCTAGGAGACTTGCTGCCTGCCCATGGACGTGGCCTGCACCCAGCCATTTACCACCTTGGGCAGTTTGCACTTCTTG aagagcctaatccatggctactacttactttcctctttattttgtttcagGGTATGGTCACATGGCCCCATTATCCTCAGGTGGAAAGGCCTTCTGTGTGGTTTATACAGCCCTTGGGCTGCCGGCCTCTATAGCACTTGTGGCTGCTGTCACAACTTTGCGTCACTGTCTACTGCGTGTGTTTAGCCACCCAGGTGATTGGATTGCCATTCACTGGCAGTTGGCACCAGTCAATGCTGCTCTCCTCCAGGCTGCAGGACTGAGTCTTCTGGTGGCCTATGTCTTCATGCTGTTGCCTGCACTGGTCTTGTTAGGTGTTCAGGGGGACTGCAGCCTTTTGGAGGCCATTTATTACTGCTATGGCTCACTTAGCATGATTGGTCTAGGAGATCTGCTCCCTGCCCATGGATGTGGCTTACACCCCACTATTTACCATCTAGGGCAGTTTGCACTACTTGgtgagtacagttatgaaattttgggagggtaatctactcacggaccaatg Alignment from GeneWise GTTATGGCCACATGGCCCCACTCTCCTCAGGTGGAAAGGCCTTCTGTGTGGTCTATGCAGCCCTTGGGCTGCCAGCCTCTCTAGCACTTGTGGCTGCC---------CTGCGCCACTGCTTGCTGCCTGTGTTCAGTCGCCCAGGTGACTGGGTAGCCATTCGCTGGCAGCTGGCACCAGCTCAGGCTGCTCTGCTACAGGCAGCAGGACTGGGCCTCCTGGTGGCCTGTGTCTTCATGCTGCTGCCAGCACTGGTGCTGTGGGGTGTACAGGGTGACTGCAGCCTGCTAGAAGCCATCTACTTCTGTTTCGGCTCACTCAGCACGATCGGCCTAGGAGACTTGCTGCCTGCCCATGGACGTGGCCTGCACCCAGCCATTTACCACCTTGGGCAGTTTGCACTTCTTG aagagcctaatccatggctactacttactttcctctttattttgtttcagGGTATGGTCACATGGCCCCATTATCCTCAGGTGGAAAGGCCTTCTGTGTGGTTTATACAGCCCTTGGGCTGCCGGCCTCTATAGCACTTGTGGCTGCTGTCACAACTTTGCGTCACTGTCTACTGCGTGTGTTTAGCCACCCAGGTGATTGGATTGCCATTCACTGGCAGTTGGCACCAGTCAATGCTGCTCTCCTCCAGGCTGCAGGACTGAGTCTTCTGGTGGCCTATGTCTTCATGCTGTTGCCTGCACTGGTCTTGTTAGGTGTTCAGGGGGACTGCAGCCTTTTGGAGGCCATTTATTACTGCTATGGCTCACTTAGCATGATTGGTCTAGGAGATCTGCTCCCTGCCCATGGATGTGGCTTACACCCCACTATTTACCATCTAGGGCAGTTTGCACTACTTGgtgagtacagttatgaaattttgggagggtaatctactcacggaccaatg #### Kdm2a_ID502_18 --> 2 - 1 Original Alignment gaTTAAAAGACCTCCTCCTAGCAGGCTGTTCCTGGTCTGCAGTATCTGCCCTCAGCACTTCCAGCTGCCCGCTTCTCAGGACCCTTGATCTTCGGTGGGCAGTAGGAATTAAAGACCCTCAAATTCGGGACTTGCTGACTCCACCCACAGATAAGCCAg tgaatacacttagtatccacttactcagaactacttgtttttctttctaggaTTAAAAGATCTCCTCCTGGCAGGCTGTTCCTGGTCTGCAGTATCTGCCCTCAGCACTTCCAGCTGCCCACTCCTCACAACCCTTGATCTTCGGTGGGCAGTAGGTATTAAAGACCCTAAAATTAGGGACTTGCTGACTCCACCGACAGATAAGCCAggtaagcacttgacccttgcttctctatcttgtacatttagtcttcctgat Alignment from CESAR gaTTAAAAGACCTCCTCCTAGCAGGCTGTTCCTGGTCTGCAGTATCTGCCCTCAGCACTTCCAGCTGCCCGCTTCTCAGGACCCTTGATCTTCGGTGGGCAGTAGGAATTAAAGACCCTCAAATTCGGGACTTGCTGACTCCACCCACAGATAAGCCAg tgaatacacttagtatccacttactcagaactacttgtttttctttctaggaTTAAAAGATCTCCTCCTGGCAGGCTGTTCCTGGTCTGCAGTATCTGCCCTCAGCACTTCCAGCTGCCCACTCCTCACAACCCTTGATCTTCGGTGGGCAGTAGGTATTAAAGACCCTAAAATTAGGGACTTGCTGACTCCACCGACAGATAAGCCAggtaagcacttgacccttgcttctctatcttgtacatttagtcttcctgat Alignment from Spaln_aa2Genome GATTAAAAGACCTCCTCCTAGCAGGCTGTTCCTGGTCTGCAGTATCTGCCCTCAGCACTTCCAGCTGCCCGCTTCTCAGGACCCTTGATCTTCGGTGGGCAGTAGGAATTAAAGACCCTCAAATTCGGGACTTGCTGACTCCACCCACAGATAAGCCAG tgaatacacttagtatccacttactcagaactacttgtttttctttctagGATTAAAAGATCTCCTCCTGGCAGGCTGTTCCTGGTCTGCAGTATCTGCCCTCAGCACTTCCAGCTGCCCACTCCTCACAACCCTTGATCTTCGGTGGGCAGTAGGTATTAAAGACCCTAAAATTAGGGACTTGCTGACTCCACCGACAGATAAGCCAGgtaagcacttgacccttgcttctctatcttgtacatttagtcttcctgat Alignment from Spaln_nt2Genome GATTAAAAGACCTCCTCCTAGCAGGCTGTTCCTGGTCTGCAGTATCTGCCCTCAGCACTTCCAGCTGCCCGCTTCTCAGGACCCTTGATCTTCGGTGGGCAGTAGGAATTAAAGACCCTCAAATTCGGGACTTGCTGACTCCACCCACAGATAAGCCAG tgaatacacttagtatccacttactcagaactacttgtttttctttctagGATTAAAAGATCTCCTCCTGGCAGGCTGTTCCTGGTCTGCAGTATCTGCCCTCAGCACTTCCAGCTGCCCACTCCTCACAACCCTTGATCTTCGGTGGGCAGTAGGTATTAAAGACCCTAAAATTAGGGACTTGCTGACTCCACCGACAGATAAGCCAGgtaagcacttgacccttgcttctctatcttgtacatttagtcttcctgat Alignment from Pairagon GATTAAAAGACCTCCTCCTAGCAGGCTGTTCCTGGTCTGCAGTATCTGCCCTCAGCACTTCCAGCTGCCCGCTTCTCAGGACCCTTGATCTTCGGTGGGCAGTAGGAATTAAAGACCCTCAAATTCGGGACTTGCTGACTCCACCCACAGATAAGCCAG tgaatacacttagtatccacttactcagaactacttgtttttctttctagGATTAAAAGATCTCCTCCTGGCAGGCTGTTCCTGGTCTGCAGTATCTGCCCTCAGCACTTCCAGCTGCCCACTCCTCACAACCCTTGATCTTCGGTGGGCAGTAGGTATTAAAGACCCTAAAATTAGGGACTTGCTGACTCCACCGACAGATAAGCCAGgtaagcacttgacccttgcttctctatcttgtacatttagtcttcctgat Alignment from Exonerate_protein2genome GATTAAAAGACCTCCTCCTAGCAGGCTGTTCCTGGTCTGCAGTATCTGCCCTCAGCACTTCCAGCTGCCCGCTTCTCAGGACCCTTGATCTTCGGTGGGCAGTAGGAATTAAAGACCCTCAAATTCGGGACTTGCTGACTCCACCCACAGATAAGCCAG tgaatacacttagtatccacttactcagaactacttgtttttctttctagGATTAAAAGATCTCCTCCTGGCAGGCTGTTCCTGGTCTGCAGTATCTGCCCTCAGCACTTCCAGCTGCCCACTCCTCACAACCCTTGATCTTCGGTGGGCAGTAGGTATTAAAGACCCTAAAATTAGGGACTTGCTGACTCCACCGACAGATAAGCCAGgtaagcacttgacccttgcttctctatcttgtacatttagtcttcctgat Alignment from Exonerate_coding2genome GATTAAAAGACCTCCTCCTAGCAGGCTGTTCCTGGTCTGCAGTATCTGCCCTCAGCACTTCCAGCTGCCCGCTTCTCAGGACCCTTGATCTTCGGTGGGCAGTAGGAATTAAAGACCCTCAAATTCGGGACTTGCTGACTCCACCCACAGATAAGCCAG tgaatacacttagtatccacttactcagaactacttgtttttctttctagGATTAAAAGATCTCCTCCTGGCAGGCTGTTCCTGGTCTGCAGTATCTGCCCTCAGCACTTCCAGCTGCCCACTCCTCACAACCCTTGATCTTCGGTGGGCAGTAGGTATTAAAGACCCTAAAATTAGGGACTTGCTGACTCCACCGACAGATAAGCCAGgtaagcacttgacccttgcttctctatcttgtacatttagtcttcctgat Alignment from GeneWise GATTAAAAGACCTCCTCCTAGCAGGCTGTTCCTGGTCTGCAGTATCTGCCCTCAGCACTTCCAGCTGCCCGCTTCTCAGGACCCTTGATCTTCGGTGGGCAGTAGGAATTAAAGACCCTCAAATTCGGGACTTGCTGACTCCACCCACAGATAAGCCAG tgaatacacttagtatccacttactcagaactacttgtttttctttctagGATTAAAAGATCTCCTCCTGGCAGGCTGTTCCTGGTCTGCAGTATCTGCCCTCAGCACTTCCAGCTGCCCACTCCTCACAACCCTTGATCTTCGGTGGGCAGTAGGTATTAAAGACCCTAAAATTAGGGACTTGCTGACTCCACCGACAGATAAGCCAGgtaagcacttgacccttgcttctctatcttgtacatttagtcttcctgat #### Kdm2a_ID511_10 --> 0 - 1 Original Alignment GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGg cttgtgaagtgacttaatagcatccttcacaaacactgtctttcctgtagATTCCCAACAAATTCCATTATCCATTTTATTATGAAATGTGTTGGTATGTGTTGGAACATTACATATACTGCATAACCAATCGGTCACATCTAACTAAAGATTTCCAGAAGGAATCACTGAGTATGggtgtgttcaacaaagcaaatgaaagatagttccccccttgttaaatcccc Alignment from CESAR GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGg cttgtgaagtgacttaatagcatccttcacaaacactgtctttcctgtagATTCCCAACAAATTCCATTATCCATTTTATTATGAAATGTGTTGGTATGTGTTGGAACATTACATATACTGCATAACCAATCGGTCACATCTAACTAAAGATTTCCAGAAGGAATCACTGAGTATGggtgtgttcaacaaagcaaatgaaagatagttccccccttgttaaatcccc Alignment from Spaln_aa2Genome GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGG cttgtgaagtgacttaatagcatccttcacaaacactgtctttcctgtagATTCCCAACAAATTCCATTATCCATTTTATTATGAAATGTGTTGGTATGTGTTGGAACATTACATATACTGCATAACCAATCGGTCACATCTAACTAAAGATTTCCAGAAGGAATCACTGAGTATGGgtgtgttcaacaaagcaaatgaaagatagttccccccttgttaaatcccc Alignment from Spaln_nt2Genome GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGG cttgtgaagtgacttaatagcatccttcacaaacactgtctttcctgtagATTCCCAACAAATTCCATTATCCATTTTATTATGAAATGTGTTGGTATGTGTTGGAACATTACATATACTGCATAACCAATCGGTCACATCTAACTAAAGATTTCCAGAAGGAATCACTGAGTATGGgtgtgttcaacaaagcaaatgaaagatagttccccccttgttaaatcccc Alignment from Pairagon GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGG cttgtgaagtgacttaatagcatccttcacaaacactgtctttcctgtagATTCCCAACAAATTCCATTATCCATTTTATTATGAAATGTGTTGGTATGTGTTGGAACATTACATATACTGCATAACCAATCGGTCACATCTAACTAAAGATTTCCAGAAGGAATCACTGAGTATGGgtgtgttcaacaaagcaaatgaaagatagttccccccttgttaaatcccc Alignment from Exonerate_protein2genome GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGG cttgtgaagtgacttaatagcatccttcacaaacactgtctttcctgtagATTCCCAACAAATTCCATTATCCATTTTATTATGAAATGTGTTGGTATGTGTTGGAACATTACATATACTGCATAACCAATCGGTCACATCTAACTAAAGATTTCCAGAAGGAATCACTGAGTATGGgtgtgttcaacaaagcaaatgaaagatagttccccccttgttaaatcccc Alignment from Exonerate_coding2genome GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGG cttgtgaagtgacttaatagcatccttcacaaacactgtctttcctgtagATTCCCAACAAATTCCATTATCCATTTTATTATGAAATGTGTTGGTATGTGTTGGAACATTACATATACTGCATAACCAATCGGTCACATCTAACTAAAGATTTCCAGAAGGAATCACTGAGTATGGgtgtgttcaacaaagcaaatgaaagatagttccccccttgttaaatcccc Alignment from GeneWise GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGG cttgtgaagtgacttaatagcatccttcacaaacactgtctttcctgtagATTCCCAACAAATTCCATTATCCATTTTATTATGAAATGTGTTGGTATGTGTTGGAACATTACATATACTGCATAACCAATCGGTCACATCTAACTAAAGATTTCCAGAAGGAATCACTGAGTATGGgtgtgttcaacaaagcaaatgaaagatagttccccccttgttaaatcccc #### Kdm2a_ID516_5 --> 2 - 0 Original Alignment ggAGTCGTCGGATGGTGGATGTCATGGATGTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACG ctaagacagatattcagctaggaattttttatttttctcccaaataatagggAGCCGTCGGATGGTGGATGTCATGGATGTGAATACACCAAAAGGAATTGAAATGACCATGGCACAATGGACTCGATACTATGAGACTCCTGAGGAAGAACGAGAGAAACTCTACAATGTCATCAGCCTAGAGTTTAGCCACACTAGACTTGAGAATATGGTGCAGCAACCATCCACAgtgaggttttgctgccctttttaacatgttgatatgtcttatcttttctc Alignment from CESAR ggAGTCGTCGGATGGTGGATGTCATGGATGTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACG ctaagacagatattcagctaggaattttttatttttctcccaaataatagggAGCCGTCGGATGGTGGATGTCATGGATGTGAATACACCAAAAGGAATTGAAATGACCATGGCACAATGGACTCGATACTATGAGACTCCTGAGGAAGAACGAGAGAAACTCTACAATGTCATCAGCCTAGAGTTTAGCCACACTAGACTTGAGAATATGGTGCAGCAACCATCCACAgtgaggttttgctgccctttttaacatgttgatatgtcttatcttttctc Alignment from Spaln_aa2Genome GGAGTCGTCGGATGGTGGATGTCATGGATGTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACG ctaagacagatattcagctaggaattttttatttttctcccaaataatagGGAGCCGTCGGATGGTGGATGTCATGGATGTGAATACACCAAAAGGAATTGAAATGACCATGGCACAATGGACTCGATACTATGAGACTCCTGAGGAAGAACGAGAGAAACTCTACAATGTCATCAGCCTAGAGTTTAGCCACACTAGACTTGAGAATATGGTGCAGCAACCATCCACAgtgaggttttgctgccctttttaacatgttgatatgtcttatcttttctc Alignment from Spaln_nt2Genome GGAGTCGTCGGATGGTGGATGTCATGGATGTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACG ctaagacagatattcagctaggaattttttatttttctcccaaataatagGGAGCCGTCGGATGGTGGATGTCATGGATGTGAATACACCAAAAGGAATTGAAATGACCATGGCACAATGGACTCGATACTATGAGACTCCTGAGGAAGAACGAGAGAAACTCTACAATGTCATCAGCCTAGAGTTTAGCCACACTAGACTTGAGAATATGGTGCAGCAACCATCCACAgtgaggttttgctgccctttttaacatgttgatatgtcttatcttttctc Alignment from Pairagon GGAGTCGTCGGATGGTGGATGTCATGGATGTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACG ctaagacagatattcagctaggaattttttatttttctcccaaataatagGGAGCCGTCGGATGGTGGATGTCATGGATGTGAATACACCAAAAGGAATTGAAATGACCATGGCACAATGGACTCGATACTATGAGACTCCTGAGGAAGAACGAGAGAAACTCTACAATGTCATCAGCCTAGAGTTTAGCCACACTAGACTTGAGAATATGGTGCAGCAACCATCCACAgtgaggttttgctgccctttttaacatgttgatatgtcttatcttttctc Alignment from Exonerate_protein2genome GGAGTCGTCGGATGGTGGATGTCATGGATGTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACG ctaagacagatattcagctaggaattttttatttttctcccaaataatagGGAGCCGTCGGATGGTGGATGTCATGGATGTGAATACACCAAAAGGAATTGAAATGACCATGGCACAATGGACTCGATACTATGAGACTCCTGAGGAAGAACGAGAGAAACTCTACAATGTCATCAGCCTAGAGTTTAGCCACACTAGACTTGAGAATATGGTGCAGCAACCATCCACAgtgaggttttgctgccctttttaacatgttgatatgtcttatcttttctc Alignment from Exonerate_coding2genome GGAGTCGTCGGATGGTGGATGTCATGGATGTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACG ctaagacagatattcagctaggaattttttatttttctcccaaataatagGGAGCCGTCGGATGGTGGATGTCATGGATGTGAATACACCAAAAGGAATTGAAATGACCATGGCACAATGGACTCGATACTATGAGACTCCTGAGGAAGAACGAGAGAAACTCTACAATGTCATCAGCCTAGAGTTTAGCCACACTAGACTTGAGAATATGGTGCAGCAACCATCCACAgtgaggttttgctgccctttttaacatgttgatatgtcttatcttttctc Alignment from GeneWise GGAGTCGTCGGATGGTGGATGTCATGGATGTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACG ctaagacagatattcagctaggaattttttatttttctcccaaataatagGGAGCCGTCGGATGGTGGATGTCATGGATGTGAATACACCAAAAGGAATTGAAATGACCATGGCACAATGGACTCGATACTATGAGACTCCTGAGGAAGAACGAGAGAAACTCTACAATGTCATCAGCCTAGAGTTTAGCCACACTAGACTTGAGAATATGGTGCAGCAACCATCCACAgtgaggttttgctgccctttttaacatgttgatatgtcttatcttttctc #### Keg1_ID3447_4 --> 2 - 2 Original Alignment gtTCACAGTCAGACCTGGGCAAAGTGATAGAAAGTCTTGGAGCCACTAACTTGGGCAAGGTCAAGCATAAGCAGTGCTTTCTCTATATGGTATGCCAAACAGCAAAGAAACTGGCTCCTTCCTTGATGGATGCAAAGAACTTAGTAGTCAGCCGTAACAAG---CTCACGCCTct cactaagtcttgtcctctttgccattatgattccttgtcccaccccacaggcTCACAGTCACACCTAGGCCAAGCAATAGAAAGTCTAGGAGCCACCAATTTGGGCAAAGTT---CATAAACAGTGCTTCCTCTATATGGTATGTCAATCAGCCAAGAGAGTAGCTCCTTCCTTGATGGATGTGAAGAATTTAGTAGTGAGCCATAATAAGCAGCTCACACCTctgtgagtgcagctgaatctgctctgagattctattagacgcgcaataaaag Alignment from CESAR gtTCACAGTCAGACCTGGGCAAAGTGATAGAAAGTCTTGGAGCCACTAACTTGGGCAAGGTCAAGCATAAGCAGTGCTTTCTCTATATGGTATGCCAAACAGCAAAGAAACTGGCTCCTTCCTTGATGGATGCAAAGAACTTAGTAGTCAGCCGTAACAAG---CTCACGCCTct cactaagtcttgtcctctttgccattatgattccttgtcccaccccacaggcTCACAGTCACACCTAGGCCAAGCAATAGAAAGTCTAGGAGCCACCAATTTGGGCAAAGTT---CATAAACAGTGCTTCCTCTATATGGTATGTCAATCAGCCAAGAGAGTAGCTCCTTCCTTGATGGATGTGAAGAATTTAGTAGTGAGCCATAATAAGCAGCTCACACCTctgtgagtgcagctgaatctgctctgagattctattagacgcgcaataaaag Alignment from Spaln_aa2Genome GTTCACAGTCAGACCTGGGCAAAGTGATAGAAAGTCTTGGAGCCACTAACTTGGGCAAGGTCAAGCATAAGCAGTGCTTTCTCTATATGGTATGCCAAACAGCAAAGAAACTGGCTCCTTCCTTGATGGATGCAAAGAACTTAGTAGTCAGCCGTAACAAG---CTCACGCCTCT cactaagtcttgtcctctttgccattatgattccttgtcccaccccacagGCTCACAGTCACACCTAGGCCAAGCAATAGAAAGTCTAGGAGCCACCAATTTGGGCAAAGTT---CATAAACAGTGCTTCCTCTATATGGTATGTCAATCAGCCAAGAGAGTAGCTCCTTCCTTGATGGATGTGAAGAATTTAGTAGTGAGCCATAATAAGCAGCTCACACCTCTgtgagtgcagctgaatctgctctgagattctattagacgcgcaataaaag Alignment from Spaln_nt2Genome GTTCACAGTCAGACCTGGGCAAAGTGATAGAAAGTCTTGGAGCCACTAACTTGGGCAAGGTCAAGCATAAGCAGTGCTTTCTCTATATGGTATGCCAAACAGCAAAGAAACTGGCTCCTTCCTTGATGGATGCAAAGAACTTAGTAGTCAGCCGTAACAAGC---TCACGCCTCT cactaagtcttgtcctctttgccattatgattccttgtcccaccccacagGCTCACAGTCACACCTAGGCCAAGCAATAGAAAGTCTAGGAGCCACCAATTTGGGCAAAGT---TCATAAACAGTGCTTCCTCTATATGGTATGTCAATCAGCCAAGAGAGTAGCTCCTTCCTTGATGGATGTGAAGAATTTAGTAGTGAGCCATAATAAGCAGCTCACACCTCTgtgagtgcagctgaatctgctctgagattctattagacgcgcaataaaag Alignment from Pairagon GTTCACAGTCAGACCTGGGCAAAGTGATAGAAAGTCTTGGAGCCACTAACTTGGGCAAGGTCAAGCATAAGCAGTGCTTTCTCTATATGGTATGCCAAACAGCAAAGAAACTGGCTCCTTCCTTGATGGATGCAAAGAACTTAGTAGTCAGCCGTAACA---AGCTCACGCCTCT cactaagtcttgtcctctttgccattatgattccttgtcccaccccacagGCTCACAGTCACACCTAGGCCAAGCAATAGAAAGTCTAGGAGCCACCAATTTGGGCAAAGTT---CATAAACAGTGCTTCCTCTATATGGTATGTCAATCAGCCAAGAGAGTAGCTCCTTCCTTGATGGATGTGAAGAATTTAGTAGTGAGCCATAATAAGCAGCTCACACCTCTgtgagtgcagctgaatctgctctgagattctattagacgcgcaataaaag Alignment from Exonerate_protein2genome GTTCACAGTCAGACCTGGGCAAAGTGATAGAAAGTCTTGGAGCCACTAACTTGGGCAAGGTCAAGCATAAGCAGTGCTTTCTCTATATGGTATGCCAAACAGCAAAGAAACTGGCTCCTTCCTTGATGGATGCAAAGAACTTAGTAGTCAGCCGTAACAAG---CTCACGCCTCT cactaagtcttgtcctctttgccattatgattccttgtcccaccccacagGCTCACAGTCACACCTAGGCCAAGCAATAGAAAGTCTAGGAGCCACCAATTTGGGCAAAGTT---CATAAACAGTGCTTCCTCTATATGGTATGTCAATCAGCCAAGAGAGTAGCTCCTTCCTTGATGGATGTGAAGAATTTAGTAGTGAGCCATAATAAGCAGCTCACACCTCTgtgagtgcagctgaatctgctctgagattctattagacgcgcaataaaag Alignment from Exonerate_coding2genome GTTCACAGTCAGACCTGGGCAAAGTGATAGAAAGTCTTGGAGCCACTAACTTGGGCAAGGTCAAGCATAAGCAGTGCTTTCTCTATATGGTATGCCAAACAGCAAAGAAACTGGCTCCTTCCTTGATGGATGCAAAGAACTTAGTAGTCAGCCGTAACAAG---CTCACGCCTCT cactaagtcttgtcctctttgccattatgattccttgtcccaccccacagGCTCACAGTCACACCTAGGCCAAGCAATAGAAAGTCTAGGAGCCACCAATTTGGGCAAAGTT---CATAAACAGTGCTTCCTCTATATGGTATGTCAATCAGCCAAGAGAGTAGCTCCTTCCTTGATGGATGTGAAGAATTTAGTAGTGAGCCATAATAAGCAGCTCACACCTCTgtgagtgcagctgaatctgctctgagattctattagacgcgcaataaaag Alignment from GeneWise GTTCACAGTCAGACCTGGGCAAAGTGATAGAAAGTCTTGGAGCCACTAACTTGGGCAAGGTCAAGCATAAGCAGTGCTTTCTCTATATGGTATGCCAAACAGCAAAGAAACTGGCTCCTTCCTTGATGGATGCAAAGAACTTAGTAGTCAGCCGTAACAAG---CTCACGCCTCT cactaagtcttgtcctctttgccattatgattccttgtcccaccccacagGCTCACAGTCACACCTAGGCCAAGCAATAGAAAGTCTAGGAGCCACCAATTTGGGCAAAGTT---CATAAACAGTGCTTCCTCTATATGGTATGTCAATCAGCCAAGAGAGTAGCTCCTTCCTTGATGGATGTGAAGAATTTAGTAGTGAGCCATAATAAGCAGCTCACACCTCTgtgagtgcagctgaatctgctctgagattctattagacgcgcaataaaag #### Kif11_ID7312_2 --> 1 - 0 Original Alignment aCCATTTAATCTGGCAGAGCGGAAAGCTAATGCCCACTCAGTAGTGGAATGTGACCATGCACGGAAAGAAGTCAGTGTACGGACTGCAGGGTTGACGGACAAGACCTCCAAGAAAACATACACGTTTGATATG gttatgtaatttcaatcaagagtttctacaatttactgttttacccctagaCCATTTAACTTGGCAGACCGTAAGGCTAATGCTCACTCAGTATTAGATTGTGATCATGCACGGAAAGAAGTCAGTGTACGGAGTGCAGGGTTGACCGACAAGACATCTAAGAAAAGTTATACTGTTGATATGgtatggattgttttctatacactgaggtgttggtcacataggtcatgcaa Alignment from CESAR aCCATTTAATCTGGCAGAGCGGAAAGCTAATGCCCACTCAGTAGTGGAATGTGACCATGCACGGAAAGAAGTCAGTGTACGGACTGCAGGGTTGACGGACAAGACCTCCAAGAAAACATACACGTTTGATATG gttatgtaatttcaatcaagagtttctacaatttactgttttacccctagaCCATTTAACTTGGCAGACCGTAAGGCTAATGCTCACTCAGTATTAGATTGTGATCATGCACGGAAAGAAGTCAGTGTACGGAGTGCAGGGTTGACCGACAAGACATCTAAGAAAAGTTATACTGTTGATATGgtatggattgttttctatacactgaggtgttggtcacataggtcatgcaa Alignment from Spaln_aa2Genome ACCATTTAATCTGGCAGAGCGGAAAGCTAATGCCCACTCAGTAGTGGAATGTGACCATGCACGGAAAGAAGTCAGTGTACGGACTGCAGGGTTGACGGACAAGACCTCCAAGAAAACATACACGTTTGATATG gttatgtaatttcaatcaagagtttctacaatttactgttttacccctagACCATTTAACTTGGCAGACCGTAAGGCTAATGCTCACTCAGTATTAGATTGTGATCATGCACGGAAAGAAGTCAGTGTACGGAGTGCAGGGTTGACCGACAAGACATCTAAGAAAAGTTATACTGTTGATATGgtatggattgttttctatacactgaggtgttggtcacataggtcatgcaa Alignment from Spaln_nt2Genome ACCATTTAATCTGGCAGAGCGGAAAGCTAATGCCCACTCAGTAGTGGAATGTGACCATGCACGGAAAGAAGTCAGTGTACGGACTGCAGGGTTGACGGACAAGACCTCCAAGAAAACATACACGTTTGATATG gttatgtaatttcaatcaagagtttctacaatttactgttttacccctagACCATTTAACTTGGCAGACCGTAAGGCTAATGCTCACTCAGTATTAGATTGTGATCATGCACGGAAAGAAGTCAGTGTACGGAGTGCAGGGTTGACCGACAAGACATCTAAGAAAAGTTATACTGTTGATATGgtatggattgttttctatacactgaggtgttggtcacataggtcatgcaa Alignment from Pairagon ACCATTTAATCTGGCAGAGCGGAAAGCTAATGCCCACTCAGTAGTGGAATGTGACCATGCACGGAAAGAAGTCAGTGTACGGACTGCAGGGTTGACGGACAAGACCTCCAAGAAAACATACACGTTTGATATG gttatgtaatttcaatcaagagtttctacaatttactgttttacccctagACCATTTAACTTGGCAGACCGTAAGGCTAATGCTCACTCAGTATTAGATTGTGATCATGCACGGAAAGAAGTCAGTGTACGGAGTGCAGGGTTGACCGACAAGACATCTAAGAAAAGTTATACTGTTGATATGgtatggattgttttctatacactgaggtgttggtcacataggtcatgcaa Alignment from Exonerate_protein2genome ACCATTTAATCTGGCAGAGCGGAAAGCTAATGCCCACTCAGTAGTGGAATGTGACCATGCACGGAAAGAAGTCAGTGTACGGACTGCAGGGTTGACGGACAAGACCTCCAAGAAAACATACACGTTTGATATG gttatgtaatttcaatcaagagtttctacaatttactgttttacccctagACCATTTAACTTGGCAGACCGTAAGGCTAATGCTCACTCAGTATTAGATTGTGATCATGCACGGAAAGAAGTCAGTGTACGGAGTGCAGGGTTGACCGACAAGACATCTAAGAAAAGTTATACTGTTGATATGgtatggattgttttctatacactgaggtgttggtcacataggtcatgcaa Alignment from Exonerate_coding2genome ACCATTTAATCTGGCAGAGCGGAAAGCTAATGCCCACTCAGTAGTGGAATGTGACCATGCACGGAAAGAAGTCAGTGTACGGACTGCAGGGTTGACGGACAAGACCTCCAAGAAAACATACACGTTTGATATG gttatgtaatttcaatcaagagtttctacaatttactgttttacccctagACCATTTAACTTGGCAGACCGTAAGGCTAATGCTCACTCAGTATTAGATTGTGATCATGCACGGAAAGAAGTCAGTGTACGGAGTGCAGGGTTGACCGACAAGACATCTAAGAAAAGTTATACTGTTGATATGgtatggattgttttctatacactgaggtgttggtcacataggtcatgcaa Alignment from GeneWise ACCATTTAATCTGGCAGAGCGGAAAGCTAATGCCCACTCAGTAGTGGAATGTGACCATGCACGGAAAGAAGTCAGTGTACGGACTGCAGGGTTGACGGACAAGACCTCCAAGAAAACATACACGTTTGATATG gttatgtaatttcaatcaagagtttctacaatttactgttttacccctagACCATTTAACTTGGCAGACCGTAAGGCTAATGCTCACTCAGTATTAGATTGTGATCATGCACGGAAAGAAGTCAGTGTACGGAGTGCAGGGTTGACCGACAAGACATCTAAGAAAAGTTATACTGTTGATATGgtatggattgttttctatacactgaggtgttggtcacataggtcatgcaa #### Kif11_ID7322_12 --> 0 - 0 Original Alignment GCTACAGAGTTATTTATGGATAGTAAGAACGAACTTGACCAGTGTAAATCTGACCTGCAAACCAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAG aatgcccttctattctgcaataaatgaatctttattttgaaattttatagGCTACAGAGTTATTTATGGATAGTAAGAATGAACTTGACCAGTGTAAGTCCGACCTACAAACAAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACTAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGGACCGAGAAGACACTGCATGACACGGCCAGCAAGgtgaggcttgaaaatttttagattaatttccttgtctatttcgtcatgat Alignment from CESAR GCTACAGAGTTATTTATGGATAGTAAGAACGAACTTGACCAGTGTAAATCTGACCTGCAAACCAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAG aatgcccttctattctgcaataaatgaatctttattttgaaattttatagGCTACAGAGTTATTTATGGATAGTAAGAATGAACTTGACCAGTGTAAGTCCGACCTACAAACAAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACTAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGGACCGAGAAGACACTGCATGACACGGCCAGCAAGgtgaggcttgaaaatttttagattaatttccttgtctatttcgtcatgat Alignment from Spaln_aa2Genome GCTACAGAGTTATTTATGGATAGTAAGAACGAACTTGACCAGTGTAAATCTGACCTGCAAACCAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAG aatgcccttctattctgcaataaatgaatctttattttgaaattttatagGCTACAGAGTTATTTATGGATAGTAAGAATGAACTTGACCAGTGTAAGTCCGACCTACAAACAAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACTAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGGACCGAGAAGACACTGCATGACACGGCCAGCAAGgtgaggcttgaaaatttttagattaatttccttgtctatttcgtcatgat Alignment from Spaln_nt2Genome GCTACAGAGTTATTTATGGATAGTAAGAACGAACTTGACCAGTGTAAATCTGACCTGCAAACCAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAG aatgcccttctattctgcaataaatgaatctttattttgaaattttatagGCTACAGAGTTATTTATGGATAGTAAGAATGAACTTGACCAGTGTAAGTCCGACCTACAAACAAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACTAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGGACCGAGAAGACACTGCATGACACGGCCAGCAAGgtgaggcttgaaaatttttagattaatttccttgtctatttcgtcatgat Alignment from Pairagon GCTACAGAGTTATTTATGGATAGTAAGAACGAACTTGACCAGTGTAAATCTGACCTGCAAACCAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAG aatgcccttctattctgcaataaatgaatctttattttgaaattttatagGCTACAGAGTTATTTATGGATAGTAAGAATGAACTTGACCAGTGTAAGTCCGACCTACAAACAAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACTAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGGACCGAGAAGACACTGCATGACACGGCCAGCAAGgtgaggcttgaaaatttttagattaatttccttgtctatttcgtcatgat Alignment from Exonerate_protein2genome GCTACAGAGTTATTTATGGATAGTAAGAACGAACTTGACCAGTGTAAATCTGACCTGCAAACCAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAG aatgcccttctattctgcaataaatgaatctttattttgaaattttatagGCTACAGAGTTATTTATGGATAGTAAGAATGAACTTGACCAGTGTAAGTCCGACCTACAAACAAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACTAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGGACCGAGAAGACACTGCATGACACGGCCAGCAAGgtgaggcttgaaaatttttagattaatttccttgtctatttcgtcatgat Alignment from Exonerate_coding2genome GCTACAGAGTTATTTATGGATAGTAAGAACGAACTTGACCAGTGTAAATCTGACCTGCAAACCAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAG aatgcccttctattctgcaataaatgaatctttattttgaaattttatagGCTACAGAGTTATTTATGGATAGTAAGAATGAACTTGACCAGTGTAAGTCCGACCTACAAACAAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACTAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGGACCGAGAAGACACTGCATGACACGGCCAGCAAGgtgaggcttgaaaatttttagattaatttccttgtctatttcgtcatgat Alignment from GeneWise GCTACAGAGTTATTTATGGATAGTAAGAACGAACTTGACCAGTGTAAATCTGACCTGCAAACCAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAG aatgcccttctattctgcaataaatgaatctttattttgaaattttatagGCTACAGAGTTATTTATGGATAGTAAGAATGAACTTGACCAGTGTAAGTCCGACCTACAAACAAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACTAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGGACCGAGAAGACACTGCATGACACGGCCAGCAAGgtgaggcttgaaaatttttagattaatttccttgtctatttcgtcatgat #### Kif11_ID7323_13 --> 0 - 1 Original Alignment TTGCTTAACACGGTTAAAGAAACCACCAGGGCTGTATCTGGTCTACATTCTAAACTGGACCGCAAGAGAGCAATCGATGAGCACAACGCTGAAGCTCAGGAGAGCTTTGGCAAAAACCTCAACAGTCTGTTTAATAATATGGAAGAATTGATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTAGACGTTCATAAGACACTGTTTg aggaagcacatgcaaactcgagattgttctgtgttttgtgctgtttacagTTTCTCAACACAGTTAAAGAAACCACCAGGGCTGTATCCGAGCTACATTCTAAATTGGATCACAAGAGAGCTATTGATGAGCACAATGCTGAAGCTCAGGAGAGTTTTGGCAAAAACCTAAATAGTCTTTTTAATAATATGGAAGAATTAATTAAGGATGGCAGTGCAAAACAAAAGGCCATGCTGGATGTGCACAAGACACTGTTTggtaagtgtgaggtctctcacagtaactgaattcactgtgttatgtgatca Alignment from CESAR TTGCTTAACACGGTTAAAGAAACCACCAGGGCTGTATCTGGTCTACATTCTAAACTGGACCGCAAGAGAGCAATCGATGAGCACAACGCTGAAGCTCAGGAGAGCTTTGGCAAAAACCTCAACAGTCTGTTTAATAATATGGAAGAATTGATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTAGACGTTCATAAGACACTGTTTg aggaagcacatgcaaactcgagattgttctgtgttttgtgctgtttacagTTTCTCAACACAGTTAAAGAAACCACCAGGGCTGTATCCGAGCTACATTCTAAATTGGATCACAAGAGAGCTATTGATGAGCACAATGCTGAAGCTCAGGAGAGTTTTGGCAAAAACCTAAATAGTCTTTTTAATAATATGGAAGAATTAATTAAGGATGGCAGTGCAAAACAAAAGGCCATGCTGGATGTGCACAAGACACTGTTTggtaagtgtgaggtctctcacagtaactgaattcactgtgttatgtgatca Alignment from Spaln_aa2Genome TTGCTTAACACGGTTAAAGAAACCACCAGGGCTGTATCTGGTCTACATTCTAAACTGGACCGCAAGAGAGCAATCGATGAGCACAACGCTGAAGCTCAGGAGAGCTTTGGCAAAAACCTCAACAGTCTGTTTAATAATATGGAAGAATTGATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTAGACGTTCATAAGACACTGTTTG aggaagcacatgcaaactcgagattgttctgtgttttgtgctgtttacagTTTCTCAACACAGTTAAAGAAACCACCAGGGCTGTATCCGAGCTACATTCTAAATTGGATCACAAGAGAGCTATTGATGAGCACAATGCTGAAGCTCAGGAGAGTTTTGGCAAAAACCTAAATAGTCTTTTTAATAATATGGAAGAATTAATTAAGGATGGCAGTGCAAAACAAAAGGCCATGCTGGATGTGCACAAGACACTGTTTGgtaagtgtgaggtctctcacagtaactgaattcactgtgttatgtgatca Alignment from Spaln_nt2Genome TTGCTTAACACGGTTAAAGAAACCACCAGGGCTGTATCTGGTCTACATTCTAAACTGGACCGCAAGAGAGCAATCGATGAGCACAACGCTGAAGCTCAGGAGAGCTTTGGCAAAAACCTCAACAGTCTGTTTAATAATATGGAAGAATTGATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTAGACGTTCATAAGACACTGTTTG aggaagcacatgcaaactcgagattgttctgtgttttgtgctgtttacagTTTCTCAACACAGTTAAAGAAACCACCAGGGCTGTATCCGAGCTACATTCTAAATTGGATCACAAGAGAGCTATTGATGAGCACAATGCTGAAGCTCAGGAGAGTTTTGGCAAAAACCTAAATAGTCTTTTTAATAATATGGAAGAATTAATTAAGGATGGCAGTGCAAAACAAAAGGCCATGCTGGATGTGCACAAGACACTGTTTGgtaagtgtgaggtctctcacagtaactgaattcactgtgttatgtgatca Alignment from Pairagon TTGCTTAACACGGTTAAAGAAACCACCAGGGCTGTATCTGGTCTACATTCTAAACTGGACCGCAAGAGAGCAATCGATGAGCACAACGCTGAAGCTCAGGAGAGCTTTGGCAAAAACCTCAACAGTCTGTTTAATAATATGGAAGAATTGATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTAGACGTTCATAAGACACTGTTTG aggaagcacatgcaaactcgagattgttctgtgttttgtgctgtttacagTTTCTCAACACAGTTAAAGAAACCACCAGGGCTGTATCCGAGCTACATTCTAAATTGGATCACAAGAGAGCTATTGATGAGCACAATGCTGAAGCTCAGGAGAGTTTTGGCAAAAACCTAAATAGTCTTTTTAATAATATGGAAGAATTAATTAAGGATGGCAGTGCAAAACAAAAGGCCATGCTGGATGTGCACAAGACACTGTTTGgtaagtgtgaggtctctcacagtaactgaattcactgtgttatgtgatca Alignment from Exonerate_protein2genome TTGCTTAACACGGTTAAAGAAACCACCAGGGCTGTATCTGGTCTACATTCTAAACTGGACCGCAAGAGAGCAATCGATGAGCACAACGCTGAAGCTCAGGAGAGCTTTGGCAAAAACCTCAACAGTCTGTTTAATAATATGGAAGAATTGATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTAGACGTTCATAAGACACTGTTTG aggaagcacatgcaaactcgagattgttctgtgttttgtgctgtttacagTTTCTCAACACAGTTAAAGAAACCACCAGGGCTGTATCCGAGCTACATTCTAAATTGGATCACAAGAGAGCTATTGATGAGCACAATGCTGAAGCTCAGGAGAGTTTTGGCAAAAACCTAAATAGTCTTTTTAATAATATGGAAGAATTAATTAAGGATGGCAGTGCAAAACAAAAGGCCATGCTGGATGTGCACAAGACACTGTTTGgtaagtgtgaggtctctcacagtaactgaattcactgtgttatgtgatca Alignment from Exonerate_coding2genome TTGCTTAACACGGTTAAAGAAACCACCAGGGCTGTATCTGGTCTACATTCTAAACTGGACCGCAAGAGAGCAATCGATGAGCACAACGCTGAAGCTCAGGAGAGCTTTGGCAAAAACCTCAACAGTCTGTTTAATAATATGGAAGAATTGATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTAGACGTTCATAAGACACTGTTTG aggaagcacatgcaaactcgagattgttctgtgttttgtgctgtttacagTTTCTCAACACAGTTAAAGAAACCACCAGGGCTGTATCCGAGCTACATTCTAAATTGGATCACAAGAGAGCTATTGATGAGCACAATGCTGAAGCTCAGGAGAGTTTTGGCAAAAACCTAAATAGTCTTTTTAATAATATGGAAGAATTAATTAAGGATGGCAGTGCAAAACAAAAGGCCATGCTGGATGTGCACAAGACACTGTTTGgtaagtgtgaggtctctcacagtaactgaattcactgtgttatgtgatca Alignment from GeneWise TTGCTTAACACGGTTAAAGAAACCACCAGGGCTGTATCTGGTCTACATTCTAAACTGGACCGCAAGAGAGCAATCGATGAGCACAACGCTGAAGCTCAGGAGAGCTTTGGCAAAAACCTCAACAGTCTGTTTAATAATATGGAAGAATTGATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTAGACGTTCATAAGACACTGTTTG aggaagcacatgcaaactcgagattgttctgtgttttgtgctgtttacagTTTCTCAACACAGTTAAAGAAACCACCAGGGCTGTATCCGAGCTACATTCTAAATTGGATCACAAGAGAGCTATTGATGAGCACAATGCTGAAGCTCAGGAGAGTTTTGGCAAAAACCTAAATAGTCTTTTTAATAATATGGAAGAATTAATTAAGGATGGCAGTGCAAAACAAAAGGCCATGCTGGATGTGCACAAGACACTGTTTGgtaagtgtgaggtctctcacagtaactgaattcactgtgttatgtgatca #### Kif11_ID7325_15 --> 0 - 0 Original Alignment GATGAACTTGTGACCGACCTTTTCACTTCCCTGAAGACCATCGTAGCCCCTAGTGTGGTTTCCATCTTGAACATAAATAAGCAGCTACAGCATATTTTCAGGGCTTCATCGACAGTGGCTGAAAAG aaaaatgctcattgtcacacaaacttctttcgtattgacctttcttgcagGATGAACTCCTGACTGATCTCTTTACCTCACTGAAGACCATCATAGCACCAAGTGTGGTCACCATCTTGAACATAAACAAACAGCTGCAACATATTTTCAGGGCCTCATCCAAAGTGGCTGATAGGgtgagtatacagcctaattgaaggtgctatctggacaagagatgagcact Alignment from CESAR GATGAACTTGTGACCGACCTTTTCACTTCCCTGAAGACCATCGTAGCCCCTAGTGTGGTTTCCATCTTGAACATAAATAAGCAGCTACAGCATATTTTCAGGGCTTCATCGACAGTGGCTGAAAAG aaaaatgctcattgtcacacaaacttctttcgtattgacctttcttgcagGATGAACTCCTGACTGATCTCTTTACCTCACTGAAGACCATCATAGCACCAAGTGTGGTCACCATCTTGAACATAAACAAACAGCTGCAACATATTTTCAGGGCCTCATCCAAAGTGGCTGATAGGgtgagtatacagcctaattgaaggtgctatctggacaagagatgagcact Alignment from Spaln_aa2Genome GATGAACTTGTGACCGACCTTTTCACTTCCCTGAAGACCATCGTAGCCCCTAGTGTGGTTTCCATCTTGAACATAAATAAGCAGCTACAGCATATTTTCAGGGCTTCATCGACAGTGGCTGAAAAG aaaaatgctcattgtcacacaaacttctttcgtattgacctttcttgcagGATGAACTCCTGACTGATCTCTTTACCTCACTGAAGACCATCATAGCACCAAGTGTGGTCACCATCTTGAACATAAACAAACAGCTGCAACATATTTTCAGGGCCTCATCCAAAGTGGCTGATAGGgtgagtatacagcctaattgaaggtgctatctggacaagagatgagcact Alignment from Spaln_nt2Genome GATGAACTTGTGACCGACCTTTTCACTTCCCTGAAGACCATCGTAGCCCCTAGTGTGGTTTCCATCTTGAACATAAATAAGCAGCTACAGCATATTTTCAGGGCTTCATCGACAGTGGCTGAAAAG aaaaatgctcattgtcacacaaacttctttcgtattgacctttcttgcagGATGAACTCCTGACTGATCTCTTTACCTCACTGAAGACCATCATAGCACCAAGTGTGGTCACCATCTTGAACATAAACAAACAGCTGCAACATATTTTCAGGGCCTCATCCAAAGTGGCTGATAGGgtgagtatacagcctaattgaaggtgctatctggacaagagatgagcact Alignment from Pairagon GATGAACTTGTGACCGACCTTTTCACTTCCCTGAAGACCATCGTAGCCCCTAGTGTGGTTTCCATCTTGAACATAAATAAGCAGCTACAGCATATTTTCAGGGCTTCATCGACAGTGGCTGAAAAG aaaaatgctcattgtcacacaaacttctttcgtattgacctttcttgcagGATGAACTCCTGACTGATCTCTTTACCTCACTGAAGACCATCATAGCACCAAGTGTGGTCACCATCTTGAACATAAACAAACAGCTGCAACATATTTTCAGGGCCTCATCCAAAGTGGCTGATAGGgtgagtatacagcctaattgaaggtgctatctggacaagagatgagcact Alignment from Exonerate_protein2genome GATGAACTTGTGACCGACCTTTTCACTTCCCTGAAGACCATCGTAGCCCCTAGTGTGGTTTCCATCTTGAACATAAATAAGCAGCTACAGCATATTTTCAGGGCTTCATCGACAGTGGCTGAAAAG aaaaatgctcattgtcacacaaacttctttcgtattgacctttcttgcagGATGAACTCCTGACTGATCTCTTTACCTCACTGAAGACCATCATAGCACCAAGTGTGGTCACCATCTTGAACATAAACAAACAGCTGCAACATATTTTCAGGGCCTCATCCAAAGTGGCTGATAGGgtgagtatacagcctaattgaaggtgctatctggacaagagatgagcact Alignment from Exonerate_coding2genome GATGAACTTGTGACCGACCTTTTCACTTCCCTGAAGACCATCGTAGCCCCTAGTGTGGTTTCCATCTTGAACATAAATAAGCAGCTACAGCATATTTTCAGGGCTTCATCGACAGTGGCTGAAAAG aaaaatgctcattgtcacacaaacttctttcgtattgacctttcttgcagGATGAACTCCTGACTGATCTCTTTACCTCACTGAAGACCATCATAGCACCAAGTGTGGTCACCATCTTGAACATAAACAAACAGCTGCAACATATTTTCAGGGCCTCATCCAAAGTGGCTGATAGGgtgagtatacagcctaattgaaggtgctatctggacaagagatgagcact Alignment from GeneWise GATGAACTTGTGACCGACCTTTTCACTTCCCTGAAGACCATCGTAGCCCCTAGTGTGGTTTCCATCTTGAACATAAATAAGCAGCTACAGCATATTTTCAGGGCTTCATCGACAGTGGCTGAAAAG aaaaatgctcattgtcacacaaacttctttcgtattgacctttcttgcagGATGAACTCCTGACTGATCTCTTTACCTCACTGAAGACCATCATAGCACCAAGTGTGGTCACCATCTTGAACATAAACAAACAGCTGCAACATATTTTCAGGGCCTCATCCAAAGTGGCTGATAGGgtgagtatacagcctaattgaaggtgctatctggacaagagatgagcact #### Kif11_ID7326_16 --> 0 - 0 Original Alignment GTAGAAGATCAAAAAAGAGAAATAGACAGTTTTCTCAGCATATTGTGTAACAATTTACATGAACTCCGAGAAAACACAGTTTCTTCCTTGGTTGAATCACAAAAGCTTTGTGGAGACCTAACTGAAGACCTGAAGACAATAAAGGAAACCCATTCACAG gtggtttcatttaatgagggacacccaaacacatctatgggatattttagGTAGAAGATCAAAAGAGAGAGATAGACAGCTTCTTGAGTATACTGTGTAACAATCTACATGAGCTCCAAGACAACACGGTCTCTTTCCTGACTGAATCACAAAAACTTTGTGGAGAGCTAACTGAAGACCTTAGGACAATAAAAGAGGCCCATTCCCAGgtaagtagagggggtgttgctttttgtgacaccagttaagtcagttaggg Alignment from CESAR GTAGAAGATCAAAAAAGAGAAATAGACAGTTTTCTCAGCATATTGTGTAACAATTTACATGAACTCCGAGAAAACACAGTTTCTTCCTTGGTTGAATCACAAAAGCTTTGTGGAGACCTAACTGAAGACCTGAAGACAATAAAGGAAACCCATTCACAG gtggtttcatttaatgagggacacccaaacacatctatgggatattttagGTAGAAGATCAAAAGAGAGAGATAGACAGCTTCTTGAGTATACTGTGTAACAATCTACATGAGCTCCAAGACAACACGGTCTCTTTCCTGACTGAATCACAAAAACTTTGTGGAGAGCTAACTGAAGACCTTAGGACAATAAAAGAGGCCCATTCCCAGgtaagtagagggggtgttgctttttgtgacaccagttaagtcagttaggg Alignment from Spaln_aa2Genome GTAGAAGATCAAAAAAGAGAAATAGACAGTTTTCTCAGCATATTGTGTAACAATTTACATGAACTCCGAGAAAACACAGTTTCTTCCTTGGTTGAATCACAAAAGCTTTGTGGAGACCTAACTGAAGACCTGAAGACAATAAAGGAAACCCATTCACAG gtggtttcatttaatgagggacacccaaacacatctatgggatattttagGTAGAAGATCAAAAGAGAGAGATAGACAGCTTCTTGAGTATACTGTGTAACAATCTACATGAGCTCCAAGACAACACGGTCTCTTTCCTGACTGAATCACAAAAACTTTGTGGAGAGCTAACTGAAGACCTTAGGACAATAAAAGAGGCCCATTCCCAGgtaagtagagggggtgttgctttttgtgacaccagttaagtcagttaggg Alignment from Spaln_nt2Genome GTAGAAGATCAAAAAAGAGAAATAGACAGTTTTCTCAGCATATTGTGTAACAATTTACATGAACTCCGAGAAAACACAGTTTCTTCCTTGGTTGAATCACAAAAGCTTTGTGGAGACCTAACTGAAGACCTGAAGACAATAAAGGAAACCCATTCACAG gtggtttcatttaatgagggacacccaaacacatctatgggatattttagGTAGAAGATCAAAAGAGAGAGATAGACAGCTTCTTGAGTATACTGTGTAACAATCTACATGAGCTCCAAGACAACACGGTCTCTTTCCTGACTGAATCACAAAAACTTTGTGGAGAGCTAACTGAAGACCTTAGGACAATAAAAGAGGCCCATTCCCAGgtaagtagagggggtgttgctttttgtgacaccagttaagtcagttaggg Alignment from Pairagon GTAGAAGATCAAAAAAGAGAAATAGACAGTTTTCTCAGCATATTGTGTAACAATTTACATGAACTCCGAGAAAACACAGTTTCTTCCTTGGTTGAATCACAAAAGCTTTGTGGAGACCTAACTGAAGACCTGAAGACAATAAAGGAAACCCATTCACAG gtggtttcatttaatgagggacacccaaacacatctatgggatattttagGTAGAAGATCAAAAGAGAGAGATAGACAGCTTCTTGAGTATACTGTGTAACAATCTACATGAGCTCCAAGACAACACGGTCTCTTTCCTGACTGAATCACAAAAACTTTGTGGAGAGCTAACTGAAGACCTTAGGACAATAAAAGAGGCCCATTCCCAGgtaagtagagggggtgttgctttttgtgacaccagttaagtcagttaggg Alignment from Exonerate_protein2genome GTAGAAGATCAAAAAAGAGAAATAGACAGTTTTCTCAGCATATTGTGTAACAATTTACATGAACTCCGAGAAAACACAGTTTCTTCCTTGGTTGAATCACAAAAGCTTTGTGGAGACCTAACTGAAGACCTGAAGACAATAAAGGAAACCCATTCACAG gtggtttcatttaatgagggacacccaaacacatctatgggatattttagGTAGAAGATCAAAAGAGAGAGATAGACAGCTTCTTGAGTATACTGTGTAACAATCTACATGAGCTCCAAGACAACACGGTCTCTTTCCTGACTGAATCACAAAAACTTTGTGGAGAGCTAACTGAAGACCTTAGGACAATAAAAGAGGCCCATTCCCAGgtaagtagagggggtgttgctttttgtgacaccagttaagtcagttaggg Alignment from Exonerate_coding2genome GTAGAAGATCAAAAAAGAGAAATAGACAGTTTTCTCAGCATATTGTGTAACAATTTACATGAACTCCGAGAAAACACAGTTTCTTCCTTGGTTGAATCACAAAAGCTTTGTGGAGACCTAACTGAAGACCTGAAGACAATAAAGGAAACCCATTCACAG gtggtttcatttaatgagggacacccaaacacatctatgggatattttagGTAGAAGATCAAAAGAGAGAGATAGACAGCTTCTTGAGTATACTGTGTAACAATCTACATGAGCTCCAAGACAACACGGTCTCTTTCCTGACTGAATCACAAAAACTTTGTGGAGAGCTAACTGAAGACCTTAGGACAATAAAAGAGGCCCATTCCCAGgtaagtagagggggtgttgctttttgtgacaccagttaagtcagttaggg Alignment from GeneWise GTAGAAGATCAAAAAAGAGAAATAGACAGTTTTCTCAGCATATTGTGTAACAATTTACATGAACTCCGAGAAAACACAGTTTCTTCCTTGGTTGAATCACAAAAGCTTTGTGGAGACCTAACTGAAGACCTGAAGACAATAAAGGAAACCCATTCACAG gtggtttcatttaatgagggacacccaaacacatctatgggatattttagGTAGAAGATCAAAAGAGAGAGATAGACAGCTTCTTGAGTATACTGTGTAACAATCTACATGAGCTCCAAGACAACACGGTCTCTTTCCTGACTGAATCACAAAAACTTTGTGGAGAGCTAACTGAAGACCTTAGGACAATAAAAGAGGCCCATTCCCAGgtaagtagagggggtgttgctttttgtgacaccagttaagtcagttaggg #### Kif11_ID7331_21 --> 0 - 0 Original Alignment GACATGGATGAAGAGAGGGAGGCTCTGGAGCAGTGTACTGAGGAACTTGTAAGTCCAGAGACAACTGAACATCCCAGTGCAGATTGCTCTTCCAGCAGAGGTCTTCCATTTTTCCAG agagtactggggctaagtggcatagccatgaggttacaatgtctttccagGACATGGAGGAAGAGCGAGAAGCTCCAGAACAGTGCACTGAGGAACTAGTAAGCCCACAGACAACAGAACACCTAAGTGCTGACTGCTCCTCCAGCCGGGGTCTTCAATTTTTCCAGgtaagggatgattgaccacattattggctggatggaaagccaaacataca Alignment from CESAR GACATGGATGAAGAGAGGGAGGCTCTGGAGCAGTGTACTGAGGAACTTGTAAGTCCAGAGACAACTGAACATCCCAGTGCAGATTGCTCTTCCAGCAGAGGTCTTCCATTTTTCCAG agagtactggggctaagtggcatagccatgaggttacaatgtctttccagGACATGGAGGAAGAGCGAGAAGCTCCAGAACAGTGCACTGAGGAACTAGTAAGCCCACAGACAACAGAACACCTAAGTGCTGACTGCTCCTCCAGCCGGGGTCTTCAATTTTTCCAGgtaagggatgattgaccacattattggctggatggaaagccaaacataca Alignment from Spaln_aa2Genome GACATGGATGAAGAGAGGGAGGCTCTGGAGCAGTGTACTGAGGAACTTGTAAGTCCAGAGACAACTGAACATCCCAGTGCAGATTGCTCTTCCAGCAGAGGTCTTCCATTTTTCCAG agagtactggggctaagtggcatagccatgaggttacaatgtctttccagGACATGGAGGAAGAGCGAGAAGCTCCAGAACAGTGCACTGAGGAACTAGTAAGCCCACAGACAACAGAACACCTAAGTGCTGACTGCTCCTCCAGCCGGGGTCTTCAATTTTTCCAGgtaagggatgattgaccacattattggctggatggaaagccaaacataca Alignment from Spaln_nt2Genome GACATGGATGAAGAGAGGGAGGCTCTGGAGCAGTGTACTGAGGAACTTGTAAGTCCAGAGACAACTGAACATCCCAGTGCAGATTGCTCTTCCAGCAGAGGTCTTCCATTTTTCCAG agagtactggggctaagtggcatagccatgaggttacaatgtctttccagGACATGGAGGAAGAGCGAGAAGCTCCAGAACAGTGCACTGAGGAACTAGTAAGCCCACAGACAACAGAACACCTAAGTGCTGACTGCTCCTCCAGCCGGGGTCTTCAATTTTTCCAGgtaagggatgattgaccacattattggctggatggaaagccaaacataca Alignment from Pairagon GACATGGATGAAGAGAGGGAGGCTCTGGAGCAGTGTACTGAGGAACTTGTAAGTCCAGAGACAACTGAACATCCCAGTGCAGATTGCTCTTCCAGCAGAGGTCTTCCATTTTTCCAG agagtactggggctaagtggcatagccatgaggttacaatgtctttccagGACATGGAGGAAGAGCGAGAAGCTCCAGAACAGTGCACTGAGGAACTAGTAAGCCCACAGACAACAGAACACCTAAGTGCTGACTGCTCCTCCAGCCGGGGTCTTCAATTTTTCCAGgtaagggatgattgaccacattattggctggatggaaagccaaacataca Alignment from Exonerate_protein2genome GACATGGATGAAGAGAGGGAGGCTCTGGAGCAGTGTACTGAGGAACTTGTAAGTCCAGAGACAACTGAACATCCCAGTGCAGATTGCTCTTCCAGCAGAGGTCTTCCATTTTTCCAG agagtactggggctaagtggcatagccatgaggttacaatgtctttccagGACATGGAGGAAGAGCGAGAAGCTCCAGAACAGTGCACTGAGGAACTAGTAAGCCCACAGACAACAGAACACCTAAGTGCTGACTGCTCCTCCAGCCGGGGTCTTCAATTTTTCCAGgtaagggatgattgaccacattattggctggatggaaagccaaacataca Alignment from Exonerate_coding2genome agagtactggggctaagtggcatagccatgaggttacaatgtctttccaggacatggaggaagagcgagaagctccagaacagtgcactgaggaactagtaagcccacagacaacagaacacctaagtgctgactgctcctccagccggggtcttcaatttttccaggtaagggatgattgaccacattattggctggatggaaagccaaacataca Alignment from GeneWise GACATGGATGAAGAGAGGGAGGCTCTGGAGCAGTGTACTGAGGAACTTGTAAGTCCAGAGACAACTGAACATCCCAGTGCAGATTGCTCTTCCAGCAGAGGTCTTCCATTTTTCCAG agagtactggggctaagtggcatagccatgaggttacaatgtctttccagGACATGGAGGAAGAGCGAGAAGCTCCAGAACAGTGCACTGAGGAACTAGTAAGCCCACAGACAACAGAACACCTAAGTGCTGACTGCTCCTCCAGCCGGGGTCTTCAATTTTTCCAGgtaagggatgattgaccacattattggctggatggaaagccaaacataca #### Kif20b_ID6997_2 --> 0 - 0 Original Alignment GCAAACAGTTTGGGATCTAAAAACTATCTTCAAGTTTGTCTTCGAATAAGACCATTTACACAGTCAGAAAAAGAACATGAGGCTGAG agggcctcatggtcattacttcatagtgatttctcctttgttttcaccagGCAAACGGTATAGGCTCTAAAAACTACTTGCAAGTTTGTCTTAAAATACGACCGTTAACACGGTCAGCTAAGGAACATGAACCTGAGgtgagtctagtgggtattctcttcaggtagttagtcttttgcttctgact Alignment from CESAR GCAAACAGTTTGGGATCTAAAAACTATCTTCAAGTTTGTCTTCGAATAAGACCATTTACACAGTCAGAAAAAGAACATGAGGCTGAG agggcctcatggtcattacttcatagtgatttctcctttgttttcaccagGCAAACGGTATAGGCTCTAAAAACTACTTGCAAGTTTGTCTTAAAATACGACCGTTAACACGGTCAGCTAAGGAACATGAACCTGAGgtgagtctagtgggtattctcttcaggtagttagtcttttgcttctgact Alignment from Spaln_aa2Genome GCAAACAGTTTGGGATCTAAAAACTATCTTCAAGTTTGTCTTCGAATAAGACCATTTACACAGTCAGAAAAAGAACATGAGGCTGAGGGCTGT--- agggcctcatggtcattacttcatagtgatttctcctttgttttcaccagGCAAACGGTATAGGCTCTAAAAACTACTTGCAAGTTTGTCTTAAAATACGACCGTTAACACGGTCAGCTAAGGAACATGAACCTGAGGTGAGTCTAgtgggtattctcttcaggtagttagtcttttgcttctgact Alignment from Spaln_nt2Genome GCAAACAGTTTGGGATCTAAAAACTATCTTCAAGTTTGTCTTCGAATAAGACCATTTACACAGTCAGAAAAAGAACATGAGGCTGAGGGCTGT--- agggcctcatggtcattacttcatagtgatttctcctttgttttcaccagGCAAACGGTATAGGCTCTAAAAACTACTTGCAAGTTTGTCTTAAAATACGACCGTTAACACGGTCAGCTAAGGAACATGAACCTGAGGTGAGTCTAgtgggtattctcttcaggtagttagtcttttgcttctgact Alignment from Pairagon GCAAACAGTTTGGGATCTAAAAACTATCTTCAAGTTTGTCTTCGAATAAGACCATTTACACAGTCAGAAAAAGAACATGAGGCTGAG agggcctcatggtcattacttcatagtgatttctcctttgttttcaccagGCAAACGGTATAGGCTCTAAAAACTACTTGCAAGTTTGTCTTAAAATACGACCGTTAACACGGTCAGCTAAGGAACATGAACCTGAGgtgagtctagtgggtattctcttcaggtagttagtcttttgcttctgact Alignment from Exonerate_protein2genome GCAAACAGTTTGGGATCTAAAAACTATCTTCAAGTTTGTCTTCGAATAAGACCATTTACACAGTCAGAAAAAGAACATGAGGCTGAGGGCTGT agggcctcatggtcattacttcatagtgatttctcctttgttttcaccagGCAAACGGTATAGGCTCTAAAAACTACTTGCAAGTTTGTCTTAAAATACGACCGTTAACACGGTCAGCTAAGGAACATGAACCTGAG------gtgagtctagtgggtattctcttcaggtagttagtcttttgctt Alignment from Exonerate_coding2genome GCAAACAGTTTGGGATCTAAAAACTATCTTCAAGTTTGTCTTCGAATAAGACCATTTACACAGTCAGAAAAAGAACATGAGGCTGAGGGCTGT agggcctcatggtcattacttcatagtgatttctcctttgttttcaccagGCAAACGGTATAGGCTCTAAAAACTACTTGCAAGTTTGTCTTAAAATACGACCGTTAACACGGTCAGCTAAGGAACATGAACCTGAG------gtgagtctagtgggtattctcttcaggtagttagtcttttgctt Alignment from GeneWise GCAAACAGTTTGGGATCTAAAAACTATCTTCAAGTTTGTCTTCGAATAAGACCATTTACACAGTCAGAAAAAGAACATGAGGCTGAGGGCTGTGTG agggcctcatggtcattacttcatagtgatttctcctttgttttcaccagGCAAACGGTATAGGCTCTAAAAACTACTTGCAAGTTTGTCTTAAAATACGACCGTTAACACGGTCAGCTAAGGAACATGAACCTGAGGTGAGTCTAgtgggtattctcttcaggtagttagtcttttgcttctgact #### Kif20b_ID6998_3 --> 0 - 0 Original Alignment GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTA---AGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ctgactataaacacagtctctcactagagtccatgttcctctctgttcag------GTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGACCCGCAGAGTATGCTTGGTCACTTGTTGAGTCAGAAAAGCTCTGGCCAGGTA---CAGGAATTTAGCTTTTCTAAAgtaggtgtaagtatggtggattgaccacattgaagcctctatcaagagga Alignment from CESAR GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCAC---TTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ctgactataaacacagtctctcactagagtccatgttcctctctgttcag------GTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGACCCGCAGAGTATGCTTGGTCACTTGTTGAGTCAGAAAAGCTCTGGCCAGGTA---CAGGAATTTAGCTTTTCTAAAgtaggtgtaagtatggtggattgaccacattgaagcctctatcaagagga Alignment from Spaln_aa2Genome GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ctgactataaacacagtctctcactagagtccatgttcctctctgttcag------GTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGACCCGCAGAGTATGCTTGGTCACTTGTTGAGTCAGAAAAGCTCTGGCCAGGTACAGGAATTTAGCTTTTCTAAAgtaggtgtaagtatggtggattgaccacattgaagcctctatcaagagga Alignment from Spaln_nt2Genome GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTA---AGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ctgactataaacacagtctctcactagagtccatgttcctctctgttcag------GTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGACCCGCAGAGTATGCTTGGTCACTTGTTGAGTCAGAAAAGCTCTGGCCAGGT---ACAGGAATTTAGCTTTTCTAAAgtaggtgtaagtatggtggattgaccacattgaagcctctatcaagagga Alignment from Pairagon GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCAC---TTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ctgactataaacacagtctctcactagagtccatgttcctctctgttcag------GTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGACCCGCAGAGTATGCTTGGTCACTTGTTGAGTCAGAAAAGCTCTGGCCAGGT---ACAGGAATTTAGCTTTTCTAAAgtaggtgtaagtatggtggattgaccacattgaagcctctatcaagagga Alignment from Exonerate_protein2genome GTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ctgactataaacacagtctctcactagagtccatgttcctctctgttcagGTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGACCCGCAGAGTATGCTTGGTCACTTGTTGAGTCAGAAAAGCTCTGGCCAGGTACAGGAATTTAGCTTTTCTAAAgtaggtgtaagtatggtggattgaccacattgaagcctctatcaagagga Alignment from Exonerate_coding2genome GTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ctgactataaacacagtctctcactagagtccatgttcctctctgttcagGTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGACCCGCAGAGTATGCTTGGTCACTTGTTGAGTCAGAAAAGCTCTGGCCAGGTACAGGAATTTAGCTTTTCTAAAgtaggtgtaagtatggtggattgaccacattgaagcctctatcaagagga Alignment from GeneWise ---CAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCAC---TTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ctgactataaacacagtctctcactagagtccatgttcctctctgttcagGTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGACCCGCAGAGTATGCTTGGTCACTTGTTGAGTCAGAAAAGCTCTGGCCAGGTA---CAGGAATTTAGCTTTTCTAAAgtaggtgtaagtatggtggattgaccacattgaagcctctatcaagagga #### Kif20b_ID7002_7 --> 2 - 1 Original Alignment gaCACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAg gacacattttgaggattgcagttaaacttgccccatctccctgtccacagggCACTTTACAAACTCTCTAACTATCCCAGAGTTTGAGGAACCTGTCAACAGG---------TCCAGTTTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCATTCTTTGAAATCTACAACAAAAGCATATTC---TTGTTTGTGCCTGTTTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGAATTGCCCAGGACATAAAGGGATATTCTTTCATTAAAggtaagtccatcttgttaaagaaggagcatacattacaactatttcacatt Alignment from CESAR gaCACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAg gacacattttgaggattgcagttaaacttgccccatctccctgtccacagggCACTTTACAAACTCTCTAACTATCCCAGAGTTTGAGGAACCTGTCAAC---------AGGTCCAGTTTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCATTCTTTGAAATCTACAACAAAAGCATATTC---TTGTTTGTGCCTGTTTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGAATTGCCCAGGACATAAAGGGATATTCTTTCATTAAAggtaagtccatcttgttaaagaaggagcatacattacaactatttcacatt Alignment from Spaln_aa2Genome GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG gacacattttgaggattgcagttaaacttgccccatctccctgtccacagGGCACTTTACAAACTCTCTAACTATCCCAGAGTTTGAGGAACCTGTCAAC---------AGGTCCAGTTTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCATTCTTTGAAATCTACAACAAAAGCATATTC---TTGTTTGTGCCTGTTTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGAATTGCCCAGGACATAAAGGGATATTCTTTCATTAAAGgtaagtccatcttgttaaagaaggagcatacattacaactatttcacatt Alignment from Spaln_nt2Genome GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG gacacattttgaggattgcagttaaacttgccccatctccctgtccacagGGCACTTTACAAACTCTCTAACTATCCCAGAGTTTGAGGAACCTGTCAACAG---------GTCCAGTTTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCATTCTTTGAAATCTACAACAAAAGCATATTC---TTGTTTGTGCCTGTTTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGAATTGCCCAGGACATAAAGGGATATTCTTTCATTAAAGgtaagtccatcttgttaaagaaggagcatacattacaactatttcacatt Alignment from Pairagon GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG gacacattttgaggattgcagttaaacttgccccatctccctgtccacagGGCACTTTACAAACTCTCTAACTATCCCAGAGTTTGAGGAACCTGTCAACAG---------GTCCAGTTTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCATTCTTTGAAATCTACAACAAAAGCATATTC---TTGTTTGTGCCTGTTTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGAATTGCCCAGGACATAAAGGGATATTCTTTCATTAAAGgtaagtccatcttgttaaagaaggagcatacattacaactatttcacatt Alignment from Exonerate_protein2genome GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG gacacattttgaggattgcagttaaacttgccccatctccctgtccacagGGCACTTTACAAACTCTCTAACTATCCCAGAGTTTGAGGAACCTGTCAAC---------AGGTCCAGTTTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCATTCTTTGAAATCTACAACAAAAGCATATTC---TTGTTTGTGCCTGTTTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGAATTGCCCAGGACATAAAGGGATATTCTTTCATTAAAGgtaagtccatcttgttaaagaaggagcatacattacaactatttcacatt Alignment from Exonerate_coding2genome GTTACCATACATAATGACAGTTATGACGTTCTTTGTGGACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG gacacattttgagGATTGCAGTTAAACTTGCCCCATCTCCCTGTCCACAGGGCACTTTACAAACTCTCTAACTATCCCAGAGTTTGAGGAACCTGTCAAC---------AGGTCCAGTTTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCATTCTTTGAAATCTACAACAAAAGCATATTC---TTGTTTGTGCCTGTTTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGAATTGCCCAGGACATAAAGGGATATTCTTTCATTAAAGgtaagtccatcttgttaaagaaggagcatacattacaactatttcacatt Alignment from GeneWise GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG gacacattttgaggattgcagttaaacttgccccatctccctgtccacagGGCACTTTACAAACTCTCTAACTATCCCAGAGTTTGAGGAACCTGTCAAC---------AGGTCCAGTTTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCATTCTTTGAAATCTACAACAAAAGCATATTC---TTGTTTGTGCCTGTTTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGAATTGCCCAGGACATAAAGGGATATTCTTTCATTAAAGgtaagtccatcttgttaaagaaggagcatacattacaactatttcacatt #### Kif20b_ID7005_10 --> 1 - 2 Original Alignment aTTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAaa ctttttggaacaacagtctttgcagcacctctctctctctctgctctcaggTTGTCGCTGTGTGATCTTGCAGGTTCAGAACAAAGCATGAAGACGCAGAATGAAGGTGAGAGGCCAAGAGAAGCAGGAAATATCAACACACCCCTGTTGACCTTGGGAATGTGTGTCAATGTATTAAAGAACAGTGAAAAGTCAaagtaagcgccattagtgtcataaaatctgccgttctgagtactttctagga Alignment from CESAR aTTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAaa ctttttggaacaacagtctttgcagcacctctctctctctctgctctcaggTTGTCGCTGTGTGATCTTGCAGGTTCAGAACAAAGCATGAAGACGCAGAATGAAGGTGAGAGGCCAAGAGAAGCAGGAAATATCAACACACCCCTGTTGACCTTGGGAATGTGTGTCAATGTATTAAAGAACAGTGAAAAGTCAaagtaagcgccattagtgtcataaaatctgccgttctgagtactttctagga Alignment from Spaln_aa2Genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA ctttttggaacaacagtctttgcagcacctctctctctctctgctctcagGTTGTCGCTGTGTGATCTTGCAGGTTCAGAACAAAGCATGAAGACGCAGAATGAAGGTGAGAGGCCAAGAGAAGCAGGAAATATCAACACACCCCTGTTGACCTTGGGAATGTGTGTCAATGTATTAAAGAACAGTGAAAAGTCAAAgtaagcgccattagtgtcataaaatctgccgttctgagtactttctagga Alignment from Spaln_nt2Genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA ctttttggaacaacagtctttgcagcacctctctctctctctgctctcagGTTGTCGCTGTGTGATCTTGCAGGTTCAGAACAAAGCATGAAGACGCAGAATGAAGGTGAGAGGCCAAGAGAAGCAGGAAATATCAACACACCCCTGTTGACCTTGGGAATGTGTGTCAATGTATTAAAGAACAGTGAAAAGTCAAAgtaagcgccattagtgtcataaaatctgccgttctgagtactttctagga Alignment from Pairagon ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA ctttttggaacaacagtctttgcagcacctctctctctctctgctctcagGTTGTCGCTGTGTGATCTTGCAGGTTCAGAACAAAGCATGAAGACGCAGAATGAAGGTGAGAGGCCAAGAGAAGCAGGAAATATCAACACACCCCTGTTGACCTTGGGAATGTGTGTCAATGTATTAAAGAACAGTGAAAAGTCAAAgtaagcgccattagtgtcataaaatctgccgttctgagtactttctagga Alignment from Exonerate_protein2genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA ctttttggaacaacagtctttgcagcacctctctctctctctgctctcagGTTGTCGCTGTGTGATCTTGCAGGTTCAGAACAAAGCATGAAGACGCAGAATGAAGGTGAGAGGCCAAGAGAAGCAGGAAATATCAACACACCCCTGTTGACCTTGGGAATGTGTGTCAATGTATTAAAGAACAGTGAAAAGTCAAAgtaagcgccattagtgtcataaaatctgccgttctgagtactttctagga Alignment from Exonerate_coding2genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA ctttttggaacaacagtctttgcagcacctctctctctctctgctctcagGTTGTCGCTGTGTGATCTTGCAGGTTCAGAACAAAGCATGAAGACGCAGAATGAAGGTGAGAGGCCAAGAGAAGCAGGAAATATCAACACACCCCTGTTGACCTTGGGAATGTGTGTCAATGTATTAAAGAACAGTGAAAAGTCAAAgtaagcgccattagtgtcataaaatctgccgttctgagtactttctagga Alignment from GeneWise ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA ctttttggaacaacagtctttgcagcacctctctctctctctgctctcagGTTGTCGCTGTGTGATCTTGCAGGTTCAGAACAAAGCATGAAGACGCAGAATGAAGGTGAGAGGCCAAGAGAAGCAGGAAATATCAACACACCCCTGTTGACCTTGGGAATGTGTGTCAATGTATTAAAGAACAGTGAAAAGTCAAAgtaagcgccattagtgtcataaaatctgccgttctgagtactttctagga #### Kif20b_ID7007_12 --> 0 - 0 Original Alignment GTCTATGTTCCGGATACTTTAAGTTCTTCTCAAGAGAAATCT---TTTGCATCTAACAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGATTTGGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTAGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAG ggtttcttagcaatagctttacacaaaaggtgtaccctctatctttccagGTTTATGTACCTGATACGTTAAGTCCTTCTCAAAAGAAGTCCTCCTTTGCATCTAATAAATCCTTACAAGAAGTTTCATTAGATAGTAATCTTGACAATAAGATACTAAATGTAAAAAGAAAAACTGCTTCATGGGAAAACAGCCTAAAACATGTACTTGAAAATGAAGAA---GTCGAAGATTTAGAGGAGAATGAAGAAACTCAGAATATGGAA---GAACTTACTGATGAAGACAGGGACAGGTCCTTGGAGGAATGCAGGGTTTCTACTTGCTATAAGAAAAACAAGgtaggtttttgtgccttttgaattttctcttgcttaaaggagttatgatg Alignment from CESAR GTCTATGTTCCGGATACTTTAAGTTCTTCTCAAGAGAAATCT---TTTGCATCTAACAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGATTTGGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTAGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAG ggtttcttagcaatagctttacacaaaaggtgtaccctctatctttccagGTTTATGTACCTGATACGTTAAGTCCTTCTCAAAAGAAGTCCTCCTTTGCATCTAATAAATCCTTACAAGAAGTTTCATTAGATAGTAATCTTGACAATAAGATACTAAATGTAAAAAGAAAAACTGCTTCATGGGAAAACAGCCTAAAACATGTACTTGAAAATGAAGAA---GTCGAAGATTTAGAGGAGAATGAAGAAACTCAGAATATGGAA---GAACTTACTGATGAAGACAGGGACAGGTCCTTGGAGGAATGCAGGGTTTCTACTTGCTATAAGAAAAACAAGgtaggtttttgtgccttttgaattttctcttgcttaaaggagttatgatg Alignment from Spaln_aa2Genome GTCTATGTTCCGGATACTTTAAGTTCTTCTCAAGAGAAA---TCTTTTGCATCTAACAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGATTTGGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTAGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAG ggtttcttagcaatagctttacacaaaaggtgtaccctctatctttccagGTTTATGTACCTGATACGTTAAGTCCTTCTCAAAAGAAGTCCTCCTTTGCATCTAATAAATCCTTACAAGAAGTTTCATTAGATAGTAATCTTGACAATAAGATACTAAATGTAAAAAGAAAAACTGCTTCATGGGAAAACAGCCTAAAACATGTACTTGAAAATGAAGAA---GTCGAAGATTTAGAGGAGAATGAAGAAACTCAGAATATGGAA---GAACTTACTGATGAAGACAGGGACAGGTCCTTGGAGGAATGCAGGGTTTCTACTTGCTATAAGAAAAACAAGgtaggtttttgtgccttttgaattttctcttgcttaaaggagttatgatg Alignment from Spaln_nt2Genome GTCTATGTTCCGGATACTTTAAGTTCTTCTCAAGAGAAATCTT---TTGCATCTAACAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGATTTGGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTAGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAG ggtttcttagcaatagctttacacaaaaggtgtaccctctatctttccagGTTTATGTACCTGATACGTTAAGTCCTTCTCAAAAGAAGTCCTCCTTTGCATCTAATAAATCCTTACAAGAAGTTTCATTAGATAGTAATCTTGACAATAAGATACTAAATGTAAAAAGAAAAACTGCTTCATGGGAAAACAGCCTAAAACATGTACTTGAAAATGAAGA---AGTCGAAGATTTAGAGGAGAATGAAGAAACTCAGAATATGGAA---GAACTTACTGATGAAGACAGGGACAGGTCCTTGGAGGAATGCAGGGTTTCTACTTGCTATAAGAAAAACAAGgtaggtttttgtgccttttgaattttctcttgcttaaaggagttatgatg Alignment from Pairagon GTCTATGTTCCGGATACTTTAAGTTCTTCTCAAGAGAAA---TCTTTTGCATCTAACAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGATTTGGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTAGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAG ggtttcttagcaatagctttacacaaaaggtgtaccctctatctttccagGTTTATGTACCTGATACGTTAAGTCCTTCTCAAAAGAAGTCCTCCTTTGCATCTAATAAATCCTTACAAGAAGTTTCATTAGATAGTAATCTTGACAATAAGATACTAAATGTAAAAAGAAAAACTGCTTCATGGGAAAACAGCCTAAAACATGTACTTGAAAATGAAGA---AGTCGAAGATTTAGAGGAGAATGAAGAAACTCAGAATATGGAA---GAACTTACTGATGAAGACAGGGACAGGTCCTTGGAGGAATGCAGGGTTTCTACTTGCTATAAGAAAAACAAGgtaggtttttgtgccttttgaattttctcttgcttaaaggagttatgatg Alignment from Exonerate_protein2genome GTCTATGTTCCGGATACTTTAAGTTCTTCTCAAGAGAAA---TCTTTTGCATCTAACAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGATTTGGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTAGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAG ggtttcttagcaatagctttacacaaaaggtgtaccctctatctttccagGTTTATGTACCTGATACGTTAAGTCCTTCTCAAAAGAAGTCCTCCTTTGCATCTAATAAATCCTTACAAGAAGTTTCATTAGATAGTAATCTTGACAATAAGATACTAAATGTAAAAAGAAAAACTGCTTCATGGGAAAACAGCCTAAAACATGTACTTGAAAATGAAGAA---GTCGAAGATTTAGAGGAGAATGAAGAAACTCAGAATATGGAA---GAACTTACTGATGAAGACAGGGACAGGTCCTTGGAGGAATGCAGGGTTTCTACTTGCTATAAGAAAAACAAGgtaggtttttgtgccttttgaattttctcttgcttaaaggagttatgatg Alignment from Exonerate_coding2genome GTCTATGTTCCGGATACTTTAAGTTCTTCTCAAGAGAAA---TCTTTTGCATCTAACAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGATTTGGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTAGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAG ggtttcttagcaatagctttacacaaaaggtgtaccctctatctttccagGTTTATGTACCTGATACGTTAAGTCCTTCTCAAAAGAAGTCCTCCTTTGCATCTAATAAATCCTTACAAGAAGTTTCATTAGATAGTAATCTTGACAATAAGATACTAAATGTAAAAAGAAAAACTGCTTCATGGGAAAACAGCCTAAAACATGTACTTGAAAATGAAGAA---GTCGAAGATTTAGAGGAGAATGAAGAAACTCAGAATATGGAA---GAACTTACTGATGAAGACAGGGACAGGTCCTTGGAGGAATGCAGGGTTTCTACTTGCTATAAGAAAAACAAGgtaggtttttgtgccttttgaattttctcttgcttaaaggagttatgatg Alignment from GeneWise GTCTATGTTCCGGATACTTTAAGTTCTTCTCAAGAGAAATCT---TTTGCATCTAACAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGATTTGGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTAGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAG ggtttcttagcaatagctttacacaaaaggtgtaccctctatctttccagGTTTATGTACCTGATACGTTAAGTCCTTCTCAAAAGAAGTCCTCCTTTGCATCTAATAAATCCTTACAAGAAGTTTCATTAGATAGTAATCTTGACAATAAGATACTAAATGTAAAAAGAAAAACTGCTTCATGGGAAAACAGCCTAAAACATGTACTTGAAAATGAAGAA---GTCGAAGATTTAGAGGAGAATGAAGAAACTCAGAATATGGAA---GAACTTACTGATGAAGACAGGGACAGGTCCTTGGAGGAATGCAGGGTTTCTACTTGCTATAAGAAAAACAAGgtaggtttttgtgccttttgaattttctcttgcttaaaggagttatgatg #### Kif20b_ID7008_13 --> 0 - 2 Original Alignment GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTaa ataaaatgtaatcacagatacaacttggtaatgaccccttcctttcctagGAACTGTTAGATTTAATAGAAAAGTTAAATAAAAGATTGATAAATGAGAATCAAGAAAAATTGTCGTTAGAACTTAAGATCCGAGAAGACGTTACACAAAAATTCACTCAGTATTGGAGCCATCGGGAAGCTGATTTTaagtgagttatgtctaaatcattgtcatgatagcacaaacatcggcgtgcaa Alignment from CESAR GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTaa ataaaatgtaatcacagatacaacttggtaatgaccccttcctttcctagGAACTGTTAGATTTAATAGAAAAGTTAAATAAAAGATTGATAAATGAGAATCAAGAAAAATTGTCGTTAGAACTTAAGATCCGAGAAGACGTTACACAAAAATTCACTCAGTATTGGAGCCATCGGGAAGCTGATTTTaagtgagttatgtctaaatcattgtcatgatagcacaaacatcggcgtgcaa Alignment from Spaln_aa2Genome GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA ataaaatgtaatcacagatacaacttggtaatgaccccttcctttcctagGAACTGTTAGATTTAATAGAAAAGTTAAATAAAAGATTGATAAATGAGAATCAAGAAAAATTGTCGTTAGAACTTAAGATCCGAGAAGACGTTACACAAAAATTCACTCAGTATTGGAGCCATCGGGAAGCTGATTTTAAgtgagttatgtctaaatcattgtcatgatagcacaaacatcggcgtgcaa Alignment from Spaln_nt2Genome GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA ataaaatgtaatcacagatacaacttggtaatgaccccttcctttcctagGAACTGTTAGATTTAATAGAAAAGTTAAATAAAAGATTGATAAATGAGAATCAAGAAAAATTGTCGTTAGAACTTAAGATCCGAGAAGACGTTACACAAAAATTCACTCAGTATTGGAGCCATCGGGAAGCTGATTTTAAgtgagttatgtctaaatcattgtcatgatagcacaaacatcggcgtgcaa Alignment from Pairagon GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA ataaaatgtaatcacagatacaacttggtaatgaccccttcctttcctagGAACTGTTAGATTTAATAGAAAAGTTAAATAAAAGATTGATAAATGAGAATCAAGAAAAATTGTCGTTAGAACTTAAGATCCGAGAAGACGTTACACAAAAATTCACTCAGTATTGGAGCCATCGGGAAGCTGATTTTAAgtgagttatgtctaaatcattgtcatgatagcacaaacatcggcgtgcaa Alignment from Exonerate_protein2genome GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA ataaaatgtaatcacagatacaacttggtaatgaccccttcctttcctagGAACTGTTAGATTTAATAGAAAAGTTAAATAAAAGATTGATAAATGAGAATCAAGAAAAATTGTCGTTAGAACTTAAGATCCGAGAAGACGTTACACAAAAATTCACTCAGTATTGGAGCCATCGGGAAGCTGATTTTAAgtgagttatgtctaaatcattgtcatgatagcacaaacatcggcgtgcaa Alignment from Exonerate_coding2genome GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA ataaaatgtaatcacagatacaacttggtaatgaccccttcctttcctagGAACTGTTAGATTTAATAGAAAAGTTAAATAAAAGATTGATAAATGAGAATCAAGAAAAATTGTCGTTAGAACTTAAGATCCGAGAAGACGTTACACAAAAATTCACTCAGTATTGGAGCCATCGGGAAGCTGATTTTAAgtgagttatgtctaaatcattgtcatgatagcacaaacatcggcgtgcaa Alignment from GeneWise GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA ataaaatgtaatcacagatacaacttggtaatgaccccttcctttcctagGAACTGTTAGATTTAATAGAAAAGTTAAATAAAAGATTGATAAATGAGAATCAAGAAAAATTGTCGTTAGAACTTAAGATCCGAGAAGACGTTACACAAAAATTCACTCAGTATTGGAGCCATCGGGAAGCTGATTTTAAgtgagttatgtctaaatcattgtcatgatagcacaaacatcggcgtgcaa #### Kif20b_ID7009_14 --> 1 - 0 Original Alignment gGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGT---GACATAGAACTTGAAACTGAA tgatatttttgactaagtcatctattagattaacctgtactgtctcaaagaGAAACAGTTATTCATCAGCAGGAAATATTGGAAGAAAATACCGAACGGTGTGTGTCTATTTTTGAAGACCTGGCAGGGAAGTGTGACAGTCAGGATGAACCAACAAATAAAACTTGCTGTGATATAGAGCTAGACACTGGAgtaacctgataattacattgacattcaacactctctgacgtgacctcctt Alignment from CESAR gGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATT---TGTGACATAGAACTTGAAACTGAA tgatatttttgactaagtcatctattagattaacctgtactgtctcaaagaGAAACAGTTATTCATCAGCAGGAAATATTGGAAGAAAATACCGAACGGTGTGTGTCTATTTTTGAAGACCTGGCAGGGAAGTGTGACAGTCAGGATGAACCAACAAATAAAACTTGCTGTGATATAGAGCTAGACACTGGAgtaacctgataattacattgacattcaacactctctgacgtgacctcctt Alignment from Spaln_aa2Genome GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATT---TGTGACATAGAACTTGAAACTGAA tgatatttttgactaagtcatctattagattaacctgtactgtctcaaagAGAAACAGTTATTCATCAGCAGGAAATATTGGAAGAAAATACCGAACGGTGTGTGTCTATTTTTGAAGACCTGGCAGGGAAGTGTGACAGTCAGGATGAACCAACAAATAAAACTTGCTGTGATATAGAGCTAGACACTGGAgtaacctgataattacattgacattcaacactctctgacgtgacctcctt Alignment from Spaln_nt2Genome GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTG---TGACATAGAACTTGAAACTGAA tgatatttttgactaagtcatctattagattaacctgtactgtctcaaagAGAAACAGTTATTCATCAGCAGGAAATATTGGAAGAAAATACCGAACGGTGTGTGTCTATTTTTGAAGACCTGGCAGGGAAGTGTGACAGTCAGGATGAACCAACAAATAAAACTTGCTGTGATATAGAGCTAGACACTGGAgtaacctgataattacattgacattcaacactctctgacgtgacctcctt Alignment from Pairagon GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATT---TGTGACATAGAACTTGAAACTGAA tgatatttttgactaagtcatctattagattaacctgtactgtctcaaagAGAAACAGTTATTCATCAGCAGGAAATATTGGAAGAAAATACCGAACGGTGTGTGTCTATTTTTGAAGACCTGGCAGGGAAGTGTGACAGTCAGGATGAACCAACAAATAAAACTTGCTGTGATATAGAGCTAGACACTGGAgtaacctgataattacattgacattcaacactctctgacgtgacctcctt Alignment from Exonerate_protein2genome GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGA---ATTTGTGACATAGAACTTGAAACTGAA tgatatttttgactaagtcatctattagattaacctgtactgtctcaaagAGAAACAGTTATTCATCAGCAGGAAATATTGGAAGAAAATACCGAACGGTGTGTGTCTATTTTTGAAGACCTGGCAGGGAAGTGTGACAGTCAGGATGAACCAACAAATAAAACTTGCTGTGATATAGAGCTAGACACTGGAgtaacctgataattacattgacattcaacactctctgacgtgacctcctt Alignment from Exonerate_coding2genome GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGA---ATTTGTGACATAGAACTTGAAACTGAA tgatatttttgactaagtcatctattagattaacctgtactgtctcaaagAGAAACAGTTATTCATCAGCAGGAAATATTGGAAGAAAATACCGAACGGTGTGTGTCTATTTTTGAAGACCTGGCAGGGAAGTGTGACAGTCAGGATGAACCAACAAATAAAACTTGCTGTGATATAGAGCTAGACACTGGAgtaacctgataattacattgacattcaacactctctgacgtgacctcctt Alignment from GeneWise GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATT---TGTGACATAGAACTTGAAACTGAA tgatatttttgactaagtcatctattagattaacctgtactgtctcaaagAGAAACAGTTATTCATCAGCAGGAAATATTGGAAGAAAATACCGAACGGTGTGTGTCTATTTTTGAAGACCTGGCAGGGAAGTGTGACAGTCAGGATGAACCAACAAATAAAACTTGCTGTGATATAGAGCTAGACACTGGAgtaacctgataattacattgacattcaacactctctgacgtgacctcctt #### Kif20b_ID7021_26 --> 0 - 0 Original Alignment GAAAACCAAACCATGAATCCCAAGCCTGAATATAATGATTCCGTTGATCTTGGTGGAGTTGAAACTGAACCTCAGTCAACAAGTTTGGAAATTTCTAGGAACACAGCAGAG caatgaagcaacgctcatgtctacttctggtctttctgttgatggcacagGAAAACCAAACCATGAATCCCAGGCCTAAATATAATGATTTTGTTGACCTTGGCGGAGTTAAAACTGAACCGCAGGCAACAAGCCTGGAAATTTCTAGGAACGTAGCAGAGgtaagtgtttggtgtccactcaactgtatgtgcccttcccttgtcccaag Alignment from CESAR GAAAACCAAACCATGAATCCCAAGCCTGAATATAATGATTCCGTTGATCTTGGTGGAGTTGAAACTGAACCTCAGTCAACAAGTTTGGAAATTTCTAGGAACACAGCAGAG caatgaagcaacgctcatgtctacttctggtctttctgttgatggcacagGAAAACCAAACCATGAATCCCAGGCCTAAATATAATGATTTTGTTGACCTTGGCGGAGTTAAAACTGAACCGCAGGCAACAAGCCTGGAAATTTCTAGGAACGTAGCAGAGgtaagtgtttggtgtccactcaactgtatgtgcccttcccttgtcccaag Alignment from Spaln_aa2Genome GAAAACCAAACCATGAATCCCAAGCCTGAATATAATGATTCCGTTGATCTTGGTGGAGTTGAAACTGAACCTCAGTCAACAAGTTTGGAAATTTCTAGGAACACAGCAGAG caatgaagcaacgctcatgtctacttctggtctttctgttgatggcacagGAAAACCAAACCATGAATCCCAGGCCTAAATATAATGATTTTGTTGACCTTGGCGGAGTTAAAACTGAACCGCAGGCAACAAGCCTGGAAATTTCTAGGAACGTAGCAGAGgtaagtgtttggtgtccactcaactgtatgtgcccttcccttgtcccaag Alignment from Spaln_nt2Genome GAAAACCAAACCATGAATCCCAAGCCTGAATATAATGATTCCGTTGATCTTGGTGGAGTTGAAACTGAACCTCAGTCAACAAGTTTGGAAATTTCTAGGAACACAGCAGAG caatgaagcaacgctcatgtctacttctggtctttctgttgatggcacagGAAAACCAAACCATGAATCCCAGGCCTAAATATAATGATTTTGTTGACCTTGGCGGAGTTAAAACTGAACCGCAGGCAACAAGCCTGGAAATTTCTAGGAACGTAGCAGAGgtaagtgtttggtgtccactcaactgtatgtgcccttcccttgtcccaag Alignment from Pairagon GAAAACCAAACCATGAATCCCAAGCCTGAATATAATGATTCCGTTGATCTTGGTGGAGTTGAAACTGAACCTCAGTCAACAAGTTTGGAAATTTCTAGGAACACAGCAGAG caatgaagcaacgctcatgtctacttctggtctttctgttgatggcacagGAAAACCAAACCATGAATCCCAGGCCTAAATATAATGATTTTGTTGACCTTGGCGGAGTTAAAACTGAACCGCAGGCAACAAGCCTGGAAATTTCTAGGAACGTAGCAGAGgtaagtgtttggtgtccactcaactgtatgtgcccttcccttgtcccaag Alignment from Exonerate_protein2genome GAAAACCAAACCATGAATCCCAAGCCTGAATATAATGATTCCGTTGATCTTGGTGGAGTTGAAACTGAACCTCAGTCAACAAGTTTGGAAATTTCTAGGAACACAGCAGAG caatgaagcaacgctcatgtctacttctggtctttctgttgatggcacagGAAAACCAAACCATGAATCCCAGGCCTAAATATAATGATTTTGTTGACCTTGGCGGAGTTAAAACTGAACCGCAGGCAACAAGCCTGGAAATTTCTAGGAACGTAGCAGAGgtaagtgtttggtgtccactcaactgtatgtgcccttcccttgtcccaag Alignment from Exonerate_coding2genome GAAAACCAAACCATGAATCCCAAGCCTGAATATAATGATTCCGTTGATCTTGGTGGAGTTGAAACTGAACCTCAGTCAACAAGTTTGGAAATTTCTAGGAACACAGCAGAG caatgaagcaacgctcatgtctacttctggtctttctgttgatggcacagGAAAACCAAACCATGAATCCCAGGCCTAAATATAATGATTTTGTTGACCTTGGCGGAGTTAAAACTGAACCGCAGGCAACAAGCCTGGAAATTTCTAGGAACGTAGCAGAGgtaagtgtttggtgtccactcaactgtatgtgcccttcccttgtcccaag Alignment from GeneWise GAAAACCAAACCATGAATCCCAAGCCTGAATATAATGATTCCGTTGATCTTGGTGGAGTTGAAACTGAACCTCAGTCAACAAGTTTGGAAATTTCTAGGAACACAGCAGAG caatgaagcaacgctcatgtctacttctggtctttctgttgatggcacagGAAAACCAAACCATGAATCCCAGGCCTAAATATAATGATTTTGTTGACCTTGGCGGAGTTAAAACTGAACCGCAGGCAACAAGCCTGGAAATTTCTAGGAACGTAGCAGAGgtaagtgtttggtgtccactcaactgtatgtgcccttcccttgtcccaag #### Klc2_ID858_8 --> 0 - 1 Original Alignment GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATg gtacttttctttgtacttttcttctccaacctgtccttatgcccttccagCCCTCCTGCTACTTGAAACAGGGCAAATACCATGATGCTGAGACCCTGTATAAGGAAGTATTAACCTGTGCACACGAAAAGAAATGTGGCTTAGTCAATggtaagctctccagactgtaatgaaacctctgagcctgcttcagccaatac Alignment from CESAR GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATg gtacttttctttgtacttttcttctccaacctgtccttatgcccttccagCCCTCCTGCTACTTGAAACAGGGCAAATACCATGATGCTGAGACCCTGTATAAGGAAGTATTAACCTGTGCACACGAAAAGAAATGTGGCTTAGTCAATggtaagctctccagactgtaatgaaacctctgagcctgcttcagccaatac Alignment from Spaln_aa2Genome GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATG gtacttttctttgtacttttcttctccaacctgtccttatgcccttccagCCCTCCTGCTACTTGAAACAGGGCAAATACCATGATGCTGAGACCCTGTATAAGGAAGTATTAACCTGTGCACACGAAAAGAAATGTGGCTTAGTCAATGgtaagctctccagactgtaatgaaacctctgagcctgcttcagccaatac Alignment from Spaln_nt2Genome GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATG gtacttttctttgtacttttcttctccaacctgtccttatgcccttccagCCCTCCTGCTACTTGAAACAGGGCAAATACCATGATGCTGAGACCCTGTATAAGGAAGTATTAACCTGTGCACACGAAAAGAAATGTGGCTTAGTCAATGgtaagctctccagactgtaatgaaacctctgagcctgcttcagccaatac Alignment from Pairagon GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATG gtacttttctttgtacttttcttctccaacctgtccttatgcccttccagCCCTCCTGCTACTTGAAACAGGGCAAATACCATGATGCTGAGACCCTGTATAAGGAAGTATTAACCTGTGCACACGAAAAGAAATGTGGCTTAGTCAATGgtaagctctccagactgtaatgaaacctctgagcctgcttcagccaatac Alignment from Exonerate_protein2genome GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATG gtacttttctttgtacttttcttctccaacctgtccttatgcccttccagCCCTCCTGCTACTTGAAACAGGGCAAATACCATGATGCTGAGACCCTGTATAAGGAAGTATTAACCTGTGCACACGAAAAGAAATGTGGCTTAGTCAATGgtaagctctccagactgtaatgaaacctctgagcctgcttcagccaatac Alignment from Exonerate_coding2genome GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATG gtacttttctttgtacttttcttctccaacctgtccttatgcccttccagCCCTCCTGCTACTTGAAACAGGGCAAATACCATGATGCTGAGACCCTGTATAAGGAAGTATTAACCTGTGCACACGAAAAGAAATGTGGCTTAGTCAATGgtaagctctccagactgtaatgaaacctctgagcctgcttcagccaatac Alignment from GeneWise GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATG gtacttttctttgtacttttcttctccaacctgtccttatgcccttccagCCCTCCTGCTACTTGAAACAGGGCAAATACCATGATGCTGAGACCCTGTATAAGGAAGTATTAACCTGTGCACACGAAAAGAAATGTGGCTTAGTCAATGgtaagctctccagactgtaatgaaacctctgagcctgcttcagccaatac #### Klc2_ID862_4 --> 2 - 2 Original Alignment ccCCCAGCCCTGGAGGAGGAGATGTAGCTGCACAGCATGGGGGCTATGAGATCCCAGCACGGCTACGGACCCTCCACAACCTGGTAATCCAGTATGCTTCACAAGGCCGCTATGAGGTGGCCGTGCCCCTCTGCAAGCAGGCACTGGAAGATTTGGAGAAGACATCAGGCCATGACCACCCTGATGTGGCCACCATGCTGAACATCCTGGCACTGGTTTATcg attgtcatactgagaagtctatgagggaatccattgcccctgtccttcagccTCAAGCCCTGGAGGTGGAGAGGTAGCTGCCCAGCATGGGGGCTATGAGATTCCAGCACGGCTACATACTCTCCACAACTTGGTGATCCAGTATGGATCTCAAGGTCAA---GAGGTAGCTGTCCCATTGTGCAAGAAGTCACTTGACGATTTGGAGAAGACTTCTGGCCATGACCACCATGATGTAGCCACTATACTGAATATTCTAGAACTAGTTTATcagtaagggactcttagcttaataatacaggggcagacaaattgctcaaaca Alignment from CESAR ccCCCAGCCCTGGAGGAGGAGATGTAGCTGCACAGCATGGGGGCTATGAGATCCCAGCACGGCTACGGACCCTCCACAACCTGGTAATCCAGTATGCTTCACAAGGCCGCTATGAGGTGGCCGTGCCCCTCTGCAAGCAGGCACTGGAAGATTTGGAGAAGACATCAGGCCATGACCACCCTGATGTGGCCACCATGCTGAACATCCTGGCACTGGTTTATcg attgtcatactgagaagtctatgagggaatccattgcccctgtccttcagccTCAAGCCCTGGAGGTGGAGAGGTAGCTGCCCAGCATGGGGGCTATGAGATTCCAGCACGGCTACATACTCTCCACAACTTGGTGATCCAGTATGGATCTCAAGGTCAA---GAGGTAGCTGTCCCATTGTGCAAGAAGTCACTTGACGATTTGGAGAAGACTTCTGGCCATGACCACCATGATGTAGCCACTATACTGAATATTCTAGAACTAGTTTATcagtaagggactcttagcttaataatacaggggcagacaaattgctcaaaca Alignment from Spaln_aa2Genome CCCCCAGCCCTGGAGGAGGAGATGTAGCTGCACAGCATGGGGGCTATGAGATCCCAGCACGGCTACGGACCCTCCACAACCTGGTAATCCAGTATGCTTCACAAGGCCGCTATGAGGTGGCCGTGCCCCTCTGCAAGCAGGCACTGGAAGATTTGGAGAAGACATCAGGCCATGACCACCCTGATGTGGCCACCATGCTGAACATCCTGGCACTGGTTTATCG attgtcatactgagaagtctatgagggaatccattgcccctgtccttcagCCTCAAGCCCTGGAGGTGGAGAGGTAGCTGCCCAGCATGGGGGCTATGAGATTCCAGCACGGCTACATACTCTCCACAACTTGGTGATCCAGTATGGATCTCAAGGTCAA---GAGGTAGCTGTCCCATTGTGCAAGAAGTCACTTGACGATTTGGAGAAGACTTCTGGCCATGACCACCATGATGTAGCCACTATACTGAATATTCTAGAACTAGTTTATCAgtaagggactcttagcttaataatacaggggcagacaaattgctcaaaca Alignment from Spaln_nt2Genome CCCCCAGCCCTGGAGGAGGAGATGTAGCTGCACAGCATGGGGGCTATGAGATCCCAGCACGGCTACGGACCCTCCACAACCTGGTAATCCAGTATGCTTCACAAGGCCGCTATGAGGTGGCCGTGCCCCTCTGCAAGCAGGCACTGGAAGATTTGGAGAAGACATCAGGCCATGACCACCCTGATGTGGCCACCATGCTGAACATCCTGGCACTGGTTTATCG attgtcatactgagaagtctatgagggaatccattgcccctgtccttcagCCTCAAGCCCTGGAGGTGGAGAGGTAGCTGCCCAGCATGGGGGCTATGAGATTCCAGCACGGCTACATACTCTCCACAACTTGGTGATCCAGTATGGATCTCAAGGTC---AAGAGGTAGCTGTCCCATTGTGCAAGAAGTCACTTGACGATTTGGAGAAGACTTCTGGCCATGACCACCATGATGTAGCCACTATACTGAATATTCTAGAACTAGTTTATCAgtaagggactcttagcttaataatacaggggcagacaaattgctcaaaca Alignment from Pairagon CCCCCAGCCCTGGAGGAGGAGATGTAGCTGCACAGCATGGGGGCTATGAGATCCCAGCACGGCTACGGACCCTCCACAACCTGGTAATCCAGTATGCTTCACAAGGCCGCTATGAGGTGGCCGTGCCCCTCTGCAAGCAGGCACTGGAAGATTTGGAGAAGACATCAGGCCATGACCACCCTGATGTGGCCACCATGCTGAACATCCTGGCACTGGTTTATCG attgtcatactgagaagtctatgagggaatccattgcccctgtccttcagCCTCAAGCCCTGGAGGTGGAGAGGTAGCTGCCCAGCATGGGGGCTATGAGATTCCAGCACGGCTACATACTCTCCACAACTTGGTGATCCAGTATGGATCTCAAGGTC---AAGAGGTAGCTGTCCCATTGTGCAAGAAGTCACTTGACGATTTGGAGAAGACTTCTGGCCATGACCACCATGATGTAGCCACTATACTGAATATTCTAGAACTAGTTTATCAgtaagggactcttagcttaataatacaggggcagacaaattgctcaaaca Alignment from Exonerate_protein2genome CCCCCAGCCCTGGAGGAGGAGATGTAGCTGCACAGCATGGGGGCTATGAGATCCCAGCACGGCTACGGACCCTCCACAACCTGGTAATCCAGTATGCTTCACAAGGCCGCTATGAGGTGGCCGTGCCCCTCTGCAAGCAGGCACTGGAAGATTTGGAGAAGACATCAGGCCATGACCACCCTGATGTGGCCACCATGCTGAACATCCTGGCACTGGTTTATCG attgtcatactgagaagtctatgagggaatccattgcccctgtccttcagCCTCAAGCCCTGGAGGTGGAGAGGTAGCTGCCCAGCATGGGGGCTATGAGATTCCAGCACGGCTACATACTCTCCACAACTTGGTGATCCAGTATGGATCTCAAGGTCAA---GAGGTAGCTGTCCCATTGTGCAAGAAGTCACTTGACGATTTGGAGAAGACTTCTGGCCATGACCACCATGATGTAGCCACTATACTGAATATTCTAGAACTAGTTTATCAgtaagggactcttagcttaataatacaggggcagacaaattgctcaaaca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCCCCAGCCCTGGAGGAGGAGATGTAGCTGCACAGCATGGGGGCTATGAGATCCCAGCACGGCTACGGACCCTCCACAACCTGGTAATCCAGTATGCTTCACAAGGCCGCTATGAGGTGGCCGTGCCCCTCTGCAAGCAGGCACTGGAAGATTTGGAGAAGACATCAGGCCATGACCACCCTGATGTGGCCACCATGCTGAACATCCTGGCACTGGTTTATCG attgtcatactgagaagtctatgagggaatccattgcccctgtccttcagCCTCAAGCCCTGGAGGTGGAGAGGTAGCTGCCCAGCATGGGGGCTATGAGATTCCAGCACGGCTACATACTCTCCACAACTTGGTGATCCAGTATGGATCTCAAGGTCAA---GAGGTAGCTGTCCCATTGTGCAAGAAGTCACTTGACGATTTGGAGAAGACTTCTGGCCATGACCACCATGATGTAGCCACTATACTGAATATTCTAGAACTAGTTTATCAgtaagggactcttagcttaataatacaggggcagacaaattgctcaaaca #### Lcor_ID8184_2 --> 2 - 2 Original Alignment acGGTGTACTTGACTTATCTACTAAGAAAAGTCCATGTGCTAGCAGCACTTCCCTGAGCCATTCTCCAGGCTGCTCCAGTACTCAAGGGAACgg aaaccctcaggcagttgttcttgtctttagctccactccattccccttagatGGTGTATTGGACCTATCTACAAAGAAGAGTCCTTGTGCTAGCAGCACTCCTTTAAGCCACTCTCCAGGTTGCTCAAGCACTCAAGGAAATgggtacgtcttgattcctaattatccttaaaatcccagtactgcttttccac Alignment from CESAR acGGTGTACTTGACTTATCTACTAAGAAAAGTCCATGTGCTAGCAGCACTTCCCTGAGCCATTCTCCAGGCTGCTCCAGTACTCAAGGGAACgg aaaccctcaggcagttgttcttgtctttagctccactccattccccttagatGGTGTATTGGACCTATCTACAAAGAAGAGTCCTTGTGCTAGCAGCACTCCTTTAAGCCACTCTCCAGGTTGCTCAAGCACTCAAGGAAATgggtacgtcttgattcctaattatccttaaaatcccagtactgcttttccac Alignment from Spaln_aa2Genome ACGGTGTACTTGACTTATCTACTAAGAAAAGTCCATGTGCTAGCAGCACTTCCCTGAGCCATTCTCCAGGCTGCTCCAGTACTCAAGGGAACGG aaaccctcaggcagttgttcttgtctttagctccactccattccccttagATGGTGTATTGGACCTATCTACAAAGAAGAGTCCTTGTGCTAGCAGCACTCCTTTAAGCCACTCTCCAGGTTGCTCAAGCACTCAAGGAAATGGgtacgtcttgattcctaattatccttaaaatcccagtactgcttttccac Alignment from Spaln_nt2Genome ACGGTGTACTTGACTTATCTACTAAGAAAAGTCCATGTGCTAGCAGCACTTCCCTGAGCCATTCTCCAGGCTGCTCCAGTACTCAAGGGAACGG aaaccctcaggcagttgttcttgtctttagctccactccattccccttagATGGTGTATTGGACCTATCTACAAAGAAGAGTCCTTGTGCTAGCAGCACTCCTTTAAGCCACTCTCCAGGTTGCTCAAGCACTCAAGGAAATGGgtacgtcttgattcctaattatccttaaaatcccagtactgcttttccac Alignment from Pairagon ACGGTGTACTTGACTTATCTACTAAGAAAAGTCCATGTGCTAGCAGCACTTCCCTGAGCCATTCTCCAGGCTGCTCCAGTACTCAAGGGAACGG aaaccctcaggcagttgttcttgtctttagctccactccattccccttagATGGTGTATTGGACCTATCTACAAAGAAGAGTCCTTGTGCTAGCAGCACTCCTTTAAGCCACTCTCCAGGTTGCTCAAGCACTCAAGGAAATGGgtacgtcttgattcctaattatccttaaaatcccagtactgcttttccac Alignment from Exonerate_protein2genome ACGGTGTACTTGACTTATCTACTAAGAAAAGTCCATGTGCTAGCAGCACTTCCCTGAGCCATTCTCCAGGCTGCTCCAGTACTCAAGGGAACGG aaaccctcaggcagttgttcttgtctttagctccactccattccccttagATGGTGTATTGGACCTATCTACAAAGAAGAGTCCTTGTGCTAGCAGCACTCCTTTAAGCCACTCTCCAGGTTGCTCAAGCACTCAAGGAAATGGgtacgtcttgattcctaattatccttaaaatcccagtactgcttttccac Alignment from Exonerate_coding2genome ACGGTGTACTTGACTTATCTACTAAGAAAAGTCCATGTGCTAGCAGCACTTCCCTGAGCCATTCTCCAGGCTGCTCCAGTACTCAAGGGAACGG aaaccctcaggcagttgttcttgtctttagctccactccattccccttagATGGTGTATTGGACCTATCTACAAAGAAGAGTCCTTGTGCTAGCAGCACTCCTTTAAGCCACTCTCCAGGTTGCTCAAGCACTCAAGGAAATGGgtacgtcttgattcctaattatccttaaaatcccagtactgcttttccac Alignment from GeneWise ACGGTGTACTTGACTTATCTACTAAGAAAAGTCCATGTGCTAGCAGCACTTCCCTGAGCCATTCTCCAGGCTGCTCCAGTACTCAAGGGAACGG aaaccctcaggcagttgttcttgtctttagctccactccattccccttagATGGTGTATTGGACCTATCTACAAAGAAGAGTCCTTGTGCTAGCAGCACTCCTTTAAGCCACTCTCCAGGTTGCTCAAGCACTCAAGGAAATGGgtacgtcttgattcctaattatccttaaaatcccagtactgcttttccac #### Ldb1_ID9693_7 --> 0 - 0 Original Alignment GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tgcaggaaatcaccaaagcaaagggtggtcacagtctgtgtctcctgcagGTCTGTGTAGAAGGACGGCTGTACCTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtaagttggtgccagccccacctgaaccaagggctttggagtccatatct Alignment from CESAR GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tgcaggaaatcaccaaagcaaagggtggtcacagtctgtgtctcctgcagGTCTGTGTAGAAGGACGGCTGTACCTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtaagttggtgccagccccacctgaaccaagggctttggagtccatatct Alignment from Spaln_aa2Genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tgcaggaaatcaccaaagcaaagggtggtcacagtctgtgtctcctgcagGTCTGTGTAGAAGGACGGCTGTACCTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtaagttggtgccagccccacctgaaccaagggctttggagtccatatct Alignment from Spaln_nt2Genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tgcaggaaatcaccaaagcaaagggtggtcacagtctgtgtctcctgcagGTCTGTGTAGAAGGACGGCTGTACCTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtaagttggtgccagccccacctgaaccaagggctttggagtccatatct Alignment from Pairagon GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tgcaggaaatcaccaaagcaaagggtggtcacagtctgtgtctcctgcagGTCTGTGTAGAAGGACGGCTGTACCTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtaagttggtgccagccccacctgaaccaagggctttggagtccatatct Alignment from Exonerate_protein2genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tgcaggaaatcaccaaagcaaagggtggtcacagtctgtgtctcctgcagGTCTGTGTAGAAGGACGGCTGTACCTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtaagttggtgccagccccacctgaaccaagggctttggagtccatatct Alignment from Exonerate_coding2genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tgcaggaaatcaccaaagcaaagggtggtcacagtctgtgtctcctgcagGTCTGTGTAGAAGGACGGCTGTACCTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtaagttggtgccagccccacctgaaccaagggctttggagtccatatct Alignment from GeneWise GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC tgcaggaaatcaccaaagcaaagggtggtcacagtctgtgtctcctgcagGTCTGTGTAGAAGGACGGCTGTACCTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtaagttggtgccagccccacctgaaccaagggctttggagtccatatct #### Lgi1_ID7582_6 --> 1 - 1 Original Alignment gGACCTAAGAGGGAACGCATTTAATTGTGACTGTAAGTTGAAGTGGCTGGTGGAATGGCTCGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCGGAATATAAGAAACGGAAAATCAATAGCCTCTCCCCCAAGGATTTTGACTGTATCATTACAg ctacacatgtcttgagtacttgctacaccacaagaaacctttcttaacagcGACTTAAGAGGCAATGCATTTACGTGTGATTGTAAGTTGAAGTGGCTGGTGGAATGGCTTGGCCATACCAATGCAACTGTGGAGGACATCTACTGTGAAGGCCCACCAGAATATAAGAAAAGGAAAATCAATAGCCTTTCCCCTAAAGATTTTGGCTGTATAATTACCggtatgatgcttaaataccttatgttctagtgagtgaccaataccggtcta Alignment from CESAR gGACCTAAGAGGGAACGCATTTAATTGTGACTGTAAGTTGAAGTGGCTGGTGGAATGGCTCGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCGGAATATAAGAAACGGAAAATCAATAGCCTCTCCCCCAAGGATTTTGACTGTATCATTACAg ctacacatgtcttgagtacttgctacaccacaagaaacctttcttaacagcGACTTAAGAGGCAATGCATTTACGTGTGATTGTAAGTTGAAGTGGCTGGTGGAATGGCTTGGCCATACCAATGCAACTGTGGAGGACATCTACTGTGAAGGCCCACCAGAATATAAGAAAAGGAAAATCAATAGCCTTTCCCCTAAAGATTTTGGCTGTATAATTACCggtatgatgcttaaataccttatgttctagtgagtgaccaataccggtcta Alignment from Spaln_aa2Genome GGACCTAAGAGGGAACGCATTTAATTGTGACTGTAAGTTGAAGTGGCTGGTGGAATGGCTCGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCGGAATATAAGAAACGGAAAATCAATAGCCTCTCCCCCAAGGATTTTGACTGTATCATTACAG ctacacatgtcttgagtacttgctacaccacaagaaacctttcttaacagCGACTTAAGAGGCAATGCATTTACGTGTGATTGTAAGTTGAAGTGGCTGGTGGAATGGCTTGGCCATACCAATGCAACTGTGGAGGACATCTACTGTGAAGGCCCACCAGAATATAAGAAAAGGAAAATCAATAGCCTTTCCCCTAAAGATTTTGGCTGTATAATTACCGgtatgatgcttaaataccttatgttctagtgagtgaccaataccggtcta Alignment from Spaln_nt2Genome GGACCTAAGAGGGAACGCATTTAATTGTGACTGTAAGTTGAAGTGGCTGGTGGAATGGCTCGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCGGAATATAAGAAACGGAAAATCAATAGCCTCTCCCCCAAGGATTTTGACTGTATCATTACAG ctacacatgtcttgagtacttgctacaccacaagaaacctttcttaacagCGACTTAAGAGGCAATGCATTTACGTGTGATTGTAAGTTGAAGTGGCTGGTGGAATGGCTTGGCCATACCAATGCAACTGTGGAGGACATCTACTGTGAAGGCCCACCAGAATATAAGAAAAGGAAAATCAATAGCCTTTCCCCTAAAGATTTTGGCTGTATAATTACCGgtatgatgcttaaataccttatgttctagtgagtgaccaataccggtcta Alignment from Pairagon GGACCTAAGAGGGAACGCATTTAATTGTGACTGTAAGTTGAAGTGGCTGGTGGAATGGCTCGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCGGAATATAAGAAACGGAAAATCAATAGCCTCTCCCCCAAGGATTTTGACTGTATCATTACAG ctacacatgtcttgagtacttgctacaccacaagaaacctttcttaacagCGACTTAAGAGGCAATGCATTTACGTGTGATTGTAAGTTGAAGTGGCTGGTGGAATGGCTTGGCCATACCAATGCAACTGTGGAGGACATCTACTGTGAAGGCCCACCAGAATATAAGAAAAGGAAAATCAATAGCCTTTCCCCTAAAGATTTTGGCTGTATAATTACCGgtatgatgcttaaataccttatgttctagtgagtgaccaataccggtcta Alignment from Exonerate_protein2genome GGACCTAAGAGGGAACGCATTTAATTGTGACTGTAAGTTGAAGTGGCTGGTGGAATGGCTCGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCGGAATATAAGAAACGGAAAATCAATAGCCTCTCCCCCAAGGATTTTGACTGTATCATTACAG ctacacatgtcttgagtacttgctacaccacaagaaacctttcttaacagCGACTTAAGAGGCAATGCATTTACGTGTGATTGTAAGTTGAAGTGGCTGGTGGAATGGCTTGGCCATACCAATGCAACTGTGGAGGACATCTACTGTGAAGGCCCACCAGAATATAAGAAAAGGAAAATCAATAGCCTTTCCCCTAAAGATTTTGGCTGTATAATTACCGgtatgatgcttaaataccttatgttctagtgagtgaccaataccggtcta Alignment from Exonerate_coding2genome GGACCTAAGAGGGAACGCATTTAATTGTGACTGTAAGTTGAAGTGGCTGGTGGAATGGCTCGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCGGAATATAAGAAACGGAAAATCAATAGCCTCTCCCCCAAGGATTTTGACTGTATCATTACAG ctacacatgtcttgagtacttgctacaccacaagaaacctttcttaacagCGACTTAAGAGGCAATGCATTTACGTGTGATTGTAAGTTGAAGTGGCTGGTGGAATGGCTTGGCCATACCAATGCAACTGTGGAGGACATCTACTGTGAAGGCCCACCAGAATATAAGAAAAGGAAAATCAATAGCCTTTCCCCTAAAGATTTTGGCTGTATAATTACCGgtatgatgcttaaataccttatgttctagtgagtgaccaataccggtcta Alignment from GeneWise GGACCTAAGAGGGAACGCATTTAATTGTGACTGTAAGTTGAAGTGGCTGGTGGAATGGCTCGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCGGAATATAAGAAACGGAAAATCAATAGCCTCTCCCCCAAGGATTTTGACTGTATCATTACAG ctacacatgtcttgagtacttgctacaccacaagaaacctttcttaacagCGACTTAAGAGGCAATGCATTTACGTGTGATTGTAAGTTGAAGTGGCTGGTGGAATGGCTTGGCCATACCAATGCAACTGTGGAGGACATCTACTGTGAAGGCCCACCAGAATATAAGAAAAGGAAAATCAATAGCCTTTCCCCTAAAGATTTTGGCTGTATAATTACCGgtatgatgcttaaataccttatgttctagtgagtgaccaataccggtcta #### Lipa_ID6938_5 --> 2 - 0 Original Alignment gtTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgatagaaatgtgctcaagctcaggtcgtctctttttattgaaattcaggtTTCATAGCTTTTTCGCAAATGCCTGAGTTAGCCAAGAAGATCAAAATGTTTTTAGCACTGTCCCCAGTATTGTCTCTCAATTTTGCTTCCAGCCCACTATTGCAATTAGGACACTTGCCTGATCCACTGCTCAAGgtgagcggcttgacattttgtacatttaatactcgattgtaagtgtctgt Alignment from CESAR gtTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgatagaaatgtgctcaagctcaggtcgtctctttttattgaaattcaggtTTCATAGCTTTTTCGCAAATGCCTGAGTTAGCCAAGAAGATCAAAATGTTTTTAGCACTGTCCCCAGTATTGTCTCTCAATTTTGCTTCCAGCCCACTATTGCAATTAGGACACTTGCCTGATCCACTGCTCAAGgtgagcggcttgacattttgtacatttaatactcgattgtaagtgtctgt Alignment from Spaln_aa2Genome GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgatagaaatgtgctcaagctcaggtcgtctctttttattgaaattcagGTTTCATAGCTTTTTCGCAAATGCCTGAGTTAGCCAAGAAGATCAAAATGTTTTTAGCACTGTCCCCAGTATTGTCTCTCAATTTTGCTTCCAGCCCACTATTGCAATTAGGACACTTGCCTGATCCACTGCTCAAGgtgagcggcttgacattttgtacatttaatactcgattgtaagtgtctgt Alignment from Spaln_nt2Genome GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgatagaaatgtgctcaagctcaggtcgtctctttttattgaaattcagGTTTCATAGCTTTTTCGCAAATGCCTGAGTTAGCCAAGAAGATCAAAATGTTTTTAGCACTGTCCCCAGTATTGTCTCTCAATTTTGCTTCCAGCCCACTATTGCAATTAGGACACTTGCCTGATCCACTGCTCAAGgtgagcggcttgacattttgtacatttaatactcgattgtaagtgtctgt Alignment from Pairagon GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgatagaaatgtgctcaagctcaggtcgtctctttttattgaaattcagGTTTCATAGCTTTTTCGCAAATGCCTGAGTTAGCCAAGAAGATCAAAATGTTTTTAGCACTGTCCCCAGTATTGTCTCTCAATTTTGCTTCCAGCCCACTATTGCAATTAGGACACTTGCCTGATCCACTGCTCAAGgtgagcggcttgacattttgtacatttaatactcgattgtaagtgtctgt Alignment from Exonerate_protein2genome GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgatagaaatgtgctcaagctcaggtcgtctctttttattgaaattcagGTTTCATAGCTTTTTCGCAAATGCCTGAGTTAGCCAAGAAGATCAAAATGTTTTTAGCACTGTCCCCAGTATTGTCTCTCAATTTTGCTTCCAGCCCACTATTGCAATTAGGACACTTGCCTGATCCACTGCTCAAGgtgagcggcttgacattttgtacatttaatactcgattgtaagtgtctgt Alignment from Exonerate_coding2genome GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgatagaaatgtgctcaagctcaggtcgtctctttttattgaaattcagGTTTCATAGCTTTTTCGCAAATGCCTGAGTTAGCCAAGAAGATCAAAATGTTTTTAGCACTGTCCCCAGTATTGTCTCTCAATTTTGCTTCCAGCCCACTATTGCAATTAGGACACTTGCCTGATCCACTGCTCAAGgtgagcggcttgacattttgtacatttaatactcgattgtaagtgtctgt Alignment from GeneWise GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgatagaaatgtgctcaagctcaggtcgtctctttttattgaaattcagGTTTCATAGCTTTTTCGCAAATGCCTGAGTTAGCCAAGAAGATCAAAATGTTTTTAGCACTGTCCCCAGTATTGTCTCTCAATTTTGCTTCCAGCCCACTATTGCAATTAGGACACTTGCCTGATCCACTGCTCAAGgtgagcggcttgacattttgtacatttaatactcgattgtaagtgtctgt #### Lipa_ID6939_4 --> 1 - 1 Original Alignment tTTTGATGAGATGGCAAAATATGACCTACCTGCTTCAATTAACTACATTTTGAATAAAACTGGCCAAGAACAAATCTATTATGTGGGTCATTCTCAAGGCTGCACCATAg taaatctgctgtagaagattgatgactttgtttttctatttttattatagtTTTGATGAGATGGCAAAATATGACTTACCTGCCTCAATTAACTACATTTTAAATAAAACTGGCCGAGAGCAAATCTATTATGTGGGTCATTCTCAAGGATGCACCATAggtaaggttggtccagattttaatccaaatgtatcatccctctcgccataa Alignment from CESAR tTTTGATGAGATGGCAAAATATGACCTACCTGCTTCAATTAACTACATTTTGAATAAAACTGGCCAAGAACAAATCTATTATGTGGGTCATTCTCAAGGCTGCACCATAg taaatctgctgtagaagattgatgactttgtttttctatttttattatagtTTTGATGAGATGGCAAAATATGACTTACCTGCCTCAATTAACTACATTTTAAATAAAACTGGCCGAGAGCAAATCTATTATGTGGGTCATTCTCAAGGATGCACCATAggtaaggttggtccagattttaatccaaatgtatcatccctctcgccataa Alignment from Spaln_aa2Genome TTTTGATGAGATGGCAAAATATGACCTACCTGCTTCAATTAACTACATTTTGAATAAAACTGGCCAAGAACAAATCTATTATGTGGGTCATTCTCAAGGCTGCACCATAG taaatctgctgtagaagattgatgactttgtttttctatttttattatagTTTTGATGAGATGGCAAAATATGACTTACCTGCCTCAATTAACTACATTTTAAATAAAACTGGCCGAGAGCAAATCTATTATGTGGGTCATTCTCAAGGATGCACCATAGgtaaggttggtccagattttaatccaaatgtatcatccctctcgccataa Alignment from Spaln_nt2Genome TTTTGATGAGATGGCAAAATATGACCTACCTGCTTCAATTAACTACATTTTGAATAAAACTGGCCAAGAACAAATCTATTATGTGGGTCATTCTCAAGGCTGCACCATAG taaatctgctgtagaagattgatgactttgtttttctatttttattatagTTTTGATGAGATGGCAAAATATGACTTACCTGCCTCAATTAACTACATTTTAAATAAAACTGGCCGAGAGCAAATCTATTATGTGGGTCATTCTCAAGGATGCACCATAGgtaaggttggtccagattttaatccaaatgtatcatccctctcgccataa Alignment from Pairagon TTTTGATGAGATGGCAAAATATGACCTACCTGCTTCAATTAACTACATTTTGAATAAAACTGGCCAAGAACAAATCTATTATGTGGGTCATTCTCAAGGCTGCACCATAG taaatctgctgtagaagattgatgactttgtttttctatttttattatagTTTTGATGAGATGGCAAAATATGACTTACCTGCCTCAATTAACTACATTTTAAATAAAACTGGCCGAGAGCAAATCTATTATGTGGGTCATTCTCAAGGATGCACCATAGgtaaggttggtccagattttaatccaaatgtatcatccctctcgccataa Alignment from Exonerate_protein2genome TTTTGATGAGATGGCAAAATATGACCTACCTGCTTCAATTAACTACATTTTGAATAAAACTGGCCAAGAACAAATCTATTATGTGGGTCATTCTCAAGGCTGCACCATAG taaatctgctgtagaagattgatgactttgtttttctatttttattatagTTTTGATGAGATGGCAAAATATGACTTACCTGCCTCAATTAACTACATTTTAAATAAAACTGGCCGAGAGCAAATCTATTATGTGGGTCATTCTCAAGGATGCACCATAGgtaaggttggtccagattttaatccaaatgtatcatccctctcgccataa Alignment from Exonerate_coding2genome TTTTGATGAGATGGCAAAATATGACCTACCTGCTTCAATTAACTACATTTTGAATAAAACTGGCCAAGAACAAATCTATTATGTGGGTCATTCTCAAGGCTGCACCATAG taaatctgctgtagaagattgatgactttgtttttctatttttattatagTTTTGATGAGATGGCAAAATATGACTTACCTGCCTCAATTAACTACATTTTAAATAAAACTGGCCGAGAGCAAATCTATTATGTGGGTCATTCTCAAGGATGCACCATAGgtaaggttggtccagattttaatccaaatgtatcatccctctcgccataa Alignment from GeneWise TTTTGATGAGATGGCAAAATATGACCTACCTGCTTCAATTAACTACATTTTGAATAAAACTGGCCAAGAACAAATCTATTATGTGGGTCATTCTCAAGGCTGCACCATAG taaatctgctgtagaagattgatgactttgtttttctatttttattatagTTTTGATGAGATGGCAAAATATGACTTACCTGCCTCAATTAACTACATTTTAAATAAAACTGGCCGAGAGCAAATCTATTATGTGGGTCATTCTCAAGGATGCACCATAGgtaaggttggtccagattttaatccaaatgtatcatccctctcgccataa #### Lipf_ID6847_3 --> 2 - 2 Original Alignment gcAAGAGACCTGTGGCATATTTGCAGCATGGTTTGATTGCATCAGCCACAAACTGGATTACAAATCTGCCAAACAACAGCCTGGCCTTCATTCTAGCAGATGCTGGCTATGATGTGTGGCTGGGGAACAGTCGAGGGAATACATGGTCCCGGAAAAATGTATACTATTCACCAGACTCAGTTGAATTCTGGGCTTTCag acccagtccgaaggatcaattccctacacagactgatgcatccctggcaggtAAGAGATCTGTGGCATACCTTCAGCATGGTCTGATTGCGTCAGCTACGAATTGGATCACAAATCTACCAAACAATAGCCTGGCTTTCATCCTAGCAGATGCAGGCTATGATATATGGCTGGGGAACAGCCGACGTAATACCTGGTCTAGGAAAAATGTATACTATTCACCAGATCCAGTGGAGTTTTGGGCCTTTaggtaagtaatgcagaaaatggatgtaatgccacaggaaaattcaaaaaatg Alignment from CESAR gcAAGAGACCTGTGGCATATTTGCAGCATGGTTTGATTGCATCAGCCACAAACTGGATTACAAATCTGCCAAACAACAGCCTGGCCTTCATTCTAGCAGATGCTGGCTATGATGTGTGGCTGGGGAACAGTCGAGGGAATACATGGTCCCGGAAAAATGTATACTATTCACCAGACTCAGTTGAATTCTGGGCTTTCag acccagtccgaaggatcaattccctacacagactgatgcatccctggcaggtAAGAGATCTGTGGCATACCTTCAGCATGGTCTGATTGCGTCAGCTACGAATTGGATCACAAATCTACCAAACAATAGCCTGGCTTTCATCCTAGCAGATGCAGGCTATGATATATGGCTGGGGAACAGCCGACGTAATACCTGGTCTAGGAAAAATGTATACTATTCACCAGATCCAGTGGAGTTTTGGGCCTTTaggtaagtaatgcagaaaatggatgtaatgccacaggaaaattcaaaaaatg Alignment from Spaln_aa2Genome GCAAGAGACCTGTGGCATATTTGCAGCATGGTTTGATTGCATCAGCCACAAACTGGATTACAAATCTGCCAAACAACAGCCTGGCCTTCATTCTAGCAGATGCTGGCTATGATGTGTGGCTGGGGAACAGTCGAGGGAATACATGGTCCCGGAAAAATGTATACTATTCACCAGACTCAGTTGAATTCTGGGCTTTCAG acccagtccgaaggatcaattccctacacagactgatgcatccctggcagGTAAGAGATCTGTGGCATACCTTCAGCATGGTCTGATTGCGTCAGCTACGAATTGGATCACAAATCTACCAAACAATAGCCTGGCTTTCATCCTAGCAGATGCAGGCTATGATATATGGCTGGGGAACAGCCGACGTAATACCTGGTCTAGGAAAAATGTATACTATTCACCAGATCCAGTGGAGTTTTGGGCCTTTAGgtaagtaatgcagaaaatggatgtaatgccacaggaaaattcaaaaaatg Alignment from Spaln_nt2Genome ATCGGCAAGAGACCTGTGGCATATTTGCAGCATGGTTTGATTGCATCAGCCACAAACTGGATTACAAATCTGCCAAACAACAGCCTGGCCTTCATTCTAGCAGATGCTGGCTATGATGTGTGGCTGGGGAACAGTCGAGGGAATACATGGTCCCGGAAAAATGTATACTATTCACCAGACTCAGTTGAATTCTGGGCTTTCAG acccagtccgaaggatcaattccctacacagactgatgcatccctggcag----GTAAGAGATCTGTGGCATACCTTCAGCATGGTCTGATTGCGTCAGCTACGAATTGGATCACAAATCTACCAAACAATAGCCTGGCTTTCATCCTAGCAGATGCAGGCTATGATATATGGCTGGGGAACAGCCGACGTAATACCTGGTCTAGGAAAAATGTATACTATTCACCAGATCCAGTGGAGTTTTGGGCCTTTAGgtaagtaatgcagaaaatggatgtaatgccacaggaaaattcaaaaaatg Alignment from Pairagon GCAAGAGACCTGTGGCATATTTGCAGCATGGTTTGATTGCATCAGCCACAAACTGGATTACAAATCTGCCAAACAACAGCCTGGCCTTCATTCTAGCAGATGCTGGCTATGATGTGTGGCTGGGGAACAGTCGAGGGAATACATGGTCCCGGAAAAATGTATACTATTCACCAGACTCAGTTGAATTCTGGGCTTTCAG acccagtccgaaggatcaattccctacacagactgatgcatccctggcagGTAAGAGATCTGTGGCATACCTTCAGCATGGTCTGATTGCGTCAGCTACGAATTGGATCACAAATCTACCAAACAATAGCCTGGCTTTCATCCTAGCAGATGCAGGCTATGATATATGGCTGGGGAACAGCCGACGTAATACCTGGTCTAGGAAAAATGTATACTATTCACCAGATCCAGTGGAGTTTTGGGCCTTTAGgtaagtaatgcagaaaatggatgtaatgccacaggaaaattcaaaaaatg Alignment from Exonerate_protein2genome GCAAGAGACCTGTGGCATATTTGCAGCATGGTTTGATTGCATCAGCCACAAACTGGATTACAAATCTGCCAAACAACAGCCTGGCCTTCATTCTAGCAGATGCTGGCTATGATGTGTGGCTGGGGAACAGTCGAGGGAATACATGGTCCCGGAAAAATGTATACTATTCACCAGACTCAGTTGAATTCTGGGCTTTCAG acccagtccgaaggatcaattccctacacagactgatgcatccctggcagGTAAGAGATCTGTGGCATACCTTCAGCATGGTCTGATTGCGTCAGCTACGAATTGGATCACAAATCTACCAAACAATAGCCTGGCTTTCATCCTAGCAGATGCAGGCTATGATATATGGCTGGGGAACAGCCGACGTAATACCTGGTCTAGGAAAAATGTATACTATTCACCAGATCCAGTGGAGTTTTGGGCCTTTAGgtaagtaatgcagaaaatggatgtaatgccacaggaaaattcaaaaaatg Alignment from Exonerate_coding2genome GCAAGAGACCTGTGGCATATTTGCAGCATGGTTTGATTGCATCAGCCACAAACTGGATTACAAATCTGCCAAACAACAGCCTGGCCTTCATTCTAGCAGATGCTGGCTATGATGTGTGGCTGGGGAACAGTCGAGGGAATACATGGTCCCGGAAAAATGTATACTATTCACCAGACTCAGTTGAATTCTGGGCTTTCAG acccagtccgaaggatcaattccctacacagactgatgcatccctggcagGTAAGAGATCTGTGGCATACCTTCAGCATGGTCTGATTGCGTCAGCTACGAATTGGATCACAAATCTACCAAACAATAGCCTGGCTTTCATCCTAGCAGATGCAGGCTATGATATATGGCTGGGGAACAGCCGACGTAATACCTGGTCTAGGAAAAATGTATACTATTCACCAGATCCAGTGGAGTTTTGGGCCTTTAGgtaagtaatgcagaaaatggatgtaatgccacaggaaaattcaaaaaatg Alignment from GeneWise GCAAGAGACCTGTGGCATATTTGCAGCATGGTTTGATTGCATCAGCCACAAACTGGATTACAAATCTGCCAAACAACAGCCTGGCCTTCATTCTAGCAGATGCTGGCTATGATGTGTGGCTGGGGAACAGTCGAGGGAATACATGGTCCCGGAAAAATGTATACTATTCACCAGACTCAGTTGAATTCTGGGCTTTCAG acccagtccgaaggatcaattccctacacagactgatgcatccctggcagGTAAGAGATCTGTGGCATACCTTCAGCATGGTCTGATTGCGTCAGCTACGAATTGGATCACAAATCTACCAAACAATAGCCTGGCTTTCATCCTAGCAGATGCAGGCTATGATATATGGCTGGGGAACAGCCGACGTAATACCTGGTCTAGGAAAAATGTATACTATTCACCAGATCCAGTGGAGTTTTGGGCCTTTAGgtaagtaatgcagaaaatggatgtaatgccacaggaaaattcaaaaaatg #### Lipf_ID6851_7 --> 0 - 0 Original Alignment AGTCGCTTTGATGTGTATCTAGGGCATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAG atgattctcaattcactaactatacaaatatgctcttctgttttgggtagAGTTGCTTTGATGTGTATTTTGGTCATAATCCCGCAGGAACATCCACTCAAGACCTTTTCCCCTGGGCACAGgtgtgtctgctgtcttaagcttgagagcgtacagcactaattcttatagg Alignment from CESAR AGTCGCTTTGATGTGTATCTAGGGCATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAG atgattctcaattcactaactatacaaatatgctcttctgttttgggtagAGTTGCTTTGATGTGTATTTTGGTCATAATCCCGCAGGAACATCCACTCAAGACCTTTTCCCCTGGGCACAGgtgtgtctgctgtcttaagcttgagagcgtacagcactaattcttatagg Alignment from Spaln_aa2Genome AGTCGCTTTGATGTGTATCTAGGGCATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAG atgattctcaattcactaactatacaaatatgctcttctgttttgggtagAGTTGCTTTGATGTGTATTTTGGTCATAATCCCGCAGGAACATCCACTCAAGACCTTTTCCCCTGGGCACAGgtgtgtctgctgtcttaagcttgagagcgtacagcactaattcttatagg Alignment from Spaln_nt2Genome AGTCGCTTTGATGTGTATCTAGGGCATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAG atgattctcaattcactaactatacaaatatgctcttctgttttgggtagAGTTGCTTTGATGTGTATTTTGGTCATAATCCCGCAGGAACATCCACTCAAGACCTTTTCCCCTGGGCACAGgtgtgtctgctgtcttaagcttgagagcgtacagcactaattcttatagg Alignment from Pairagon AGTCGCTTTGATGTGTATCTAGGGCATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAG atgattctcaattcactaactatacaaatatgctcttctgttttgggtagAGTTGCTTTGATGTGTATTTTGGTCATAATCCCGCAGGAACATCCACTCAAGACCTTTTCCCCTGGGCACAGgtgtgtctgctgtcttaagcttgagagcgtacagcactaattcttatagg Alignment from Exonerate_protein2genome GTGAGTCGCTTTGATGTGTATCTAGGGCATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAG atgattctcaattcactaactatacaaatatgctcttctgttttgggTAGAGTTGCTTTGATGTGTATTTTGGTCATAATCCCGCAGGAACATCCACTCAAGACCTTTTCCCCTGGGCACAGgtgtgtctgctgtcttaagcttgagagcgtacagcactaattcttatagg Alignment from Exonerate_coding2genome GTGAGTCGCTTTGATGTGTATCTAGGGCATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAG atgattctcaattcactaactatacaaatatgctcttctgttttgggTAGAGTTGCTTTGATGTGTATTTTGGTCATAATCCCGCAGGAACATCCACTCAAGACCTTTTCCCCTGGGCACAGgtgtgtctgctgtcttaagcttgagagcgtacagcactaattcttatagg Alignment from GeneWise AGTCGCTTTGATGTGTATCTAGGGCATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAG atgattctcaattcactaactatacaaatatgctcttctgttttgggtagAGTTGCTTTGATGTGTATTTTGGTCATAATCCCGCAGGAACATCCACTCAAGACCTTTTCCCCTGGGCACAGgtgtgtctgctgtcttaagcttgagagcgtacagcactaattcttatagg #### Lipf_ID6852_8 --> 0 - 0 Original Alignment CTTGCTAAATCTGGGAAGCTTCAAGCCTATAACTGGGGAAGTCCATTACAGAACATGTTACACTACAATCAG tcaaactagtatacattagtaatggtggttttttttctaatgtgttttagCTTGCTAAATCTGGGAAGCTCCAGGCCTATAATTGGGGAAGTCCATTACAGAACATGTTACACTACAATCCAgtatgcggcttgagattaaaaaagcttgtgtattactttttaagtttctc Alignment from CESAR CTTGCTAAATCTGGGAAGCTTCAAGCCTATAACTGGGGAAGTCCATTACAGAACATGTTACACTACAATCAG tcaaactagtatacattagtaatggtggttttttttctaatgtgttttagCTTGCTAAATCTGGGAAGCTCCAGGCCTATAATTGGGGAAGTCCATTACAGAACATGTTACACTACAATCCAgtatgcggcttgagattaaaaaagcttgtgtattactttttaagtttctc Alignment from Spaln_aa2Genome CTTGCTAAATCTGGGAAGCTTCAAGCCTATAACTGGGGAAGTCCATTACAGAACATGTTACACTACAATCAG tcaaactagtatacattagtaatggtggttttttttctaatgtgttttagCTTGCTAAATCTGGGAAGCTCCAGGCCTATAATTGGGGAAGTCCATTACAGAACATGTTACACTACAATCCAgtatgcggcttgagattaaaaaagcttgtgtattactttttaagtttctc Alignment from Spaln_nt2Genome CTTGCTAAATCTGGGAAGCTTCAAGCCTATAACTGGGGAAGTCCATTACAGAACATGTTACACTACAATCAG tcaaactagtatacattagtaatggtggttttttttctaatgtgttttagCTTGCTAAATCTGGGAAGCTCCAGGCCTATAATTGGGGAAGTCCATTACAGAACATGTTACACTACAATCCAgtatgcggcttgagattaaaaaagcttgtgtattactttttaagtttctc Alignment from Pairagon CTTGCTAAATCTGGGAAGCTTCAAGCCTATAACTGGGGAAGTCCATTACAGAACATGTTACACTACAATCAG tcaaactagtatacattagtaatggtggttttttttctaatgtgttttagCTTGCTAAATCTGGGAAGCTCCAGGCCTATAATTGGGGAAGTCCATTACAGAACATGTTACACTACAATCCAgtatgcggcttgagattaaaaaagcttgtgtattactttttaagtttctc Alignment from Exonerate_protein2genome CTTGCTAAATCTGGGAAGCTTCAAGCCTATAACTGGGGAAGTCCATTACAGAACATGTTACACTACAATCAG tcaaactagtatacattagtaatggtggttttttttctaatgtgttttagCTTGCTAAATCTGGGAAGCTCCAGGCCTATAATTGGGGAAGTCCATTACAGAACATGTTACACTACAATCCAgtatgcggcttgagattaaaaaagcttgtgtattactttttaagtttctc Alignment from Exonerate_coding2genome CTTGCTAAATCTGGGAAGCTTCAAGCCTATAACTGGGGAAGTCCATTACAGAACATGTTACACTACAATCAG tcaaactagtatacattagtaatggtggttttttttctaatgtgttttagCTTGCTAAATCTGGGAAGCTCCAGGCCTATAATTGGGGAAGTCCATTACAGAACATGTTACACTACAATCCAgtatgcggcttgagattaaaaaagcttgtgtattactttttaagtttctc Alignment from GeneWise CTTGCTAAATCTGGGAAGCTTCAAGCCTATAACTGGGGAAGTCCATTACAGAACATGTTACACTACAATCAG tcaaactagtatacattagtaatggtggttttttttctaatgtgttttagCTTGCTAAATCTGGGAAGCTCCAGGCCTATAATTGGGGAAGTCCATTACAGAACATGTTACACTACAATCCAgtatgcggcttgagattaaaaaagcttgtgtattactttttaagtttctc #### Lipk_ID6859_3 --> 2 - 2 Original Alignment ctCCGAAGGCAGTTGTGTATCTGCAGCATGGCTTAATTGCATCTGCCAATAACTGGATTTGCAACCTGCCCAACAACAGCTTGGCTTTCCTTCTGGCCGATAGTGGTTATGACGTGTGGTTGGGGAACAGCCGAGGAAACACCTGGTCCAGAAATCACCTGAGACTGTCACCTAAATCACCGCAATATTGGGCCTTCag gaaaagtctgccaggactgtttatgtaattttcttgttgctcaattttagctCCGAAGGCTGTTGTCTATCTACAGCATGGGTCAATTGCATCTGCCAATAATTGGATTTGTAACCTGCCCAATAATAGCTTGGCATTCCTTTTGGCTGATAGTGGCTATGATGTATGGCTGGGAAACAGTCGAGGAAACACTTGGTCTAGAAATCACTTAAGATTGTCACCTAAATCACCACAATATTGGGCCTTCacgtgagtggaacctgatttttcatcacacacaagtagctgacagtaggaag Alignment from CESAR ctCCGAAGGCAGTTGTGTATCTGCAGCATGGCTTAATTGCATCTGCCAATAACTGGATTTGCAACCTGCCCAACAACAGCTTGGCTTTCCTTCTGGCCGATAGTGGTTATGACGTGTGGTTGGGGAACAGCCGAGGAAACACCTGGTCCAGAAATCACCTGAGACTGTCACCTAAATCACCGCAATATTGGGCCTTCag gaaaagtctgccaggactgtttatgtaattttcttgttgctcaattttagctCCGAAGGCTGTTGTCTATCTACAGCATGGGTCAATTGCATCTGCCAATAATTGGATTTGTAACCTGCCCAATAATAGCTTGGCATTCCTTTTGGCTGATAGTGGCTATGATGTATGGCTGGGAAACAGTCGAGGAAACACTTGGTCTAGAAATCACTTAAGATTGTCACCTAAATCACCACAATATTGGGCCTTCacgtgagtggaacctgatttttcatcacacacaagtagctgacagtaggaag Alignment from Spaln_aa2Genome CTCCGAAGGCAGTTGTGTATCTGCAGCATGGCTTAATTGCATCTGCCAATAACTGGATTTGCAACCTGCCCAACAACAGCTTGGCTTTCCTTCTGGCCGATAGTGGTTATGACGTGTGGTTGGGGAACAGCCGAGGAAACACCTGGTCCAGAAATCACCTGAGACTGTCACCTAAATCACCGCAATATTGGGCCTTCAG gaaaagtctgccaggactgtttatgtaattttcttgttgctcaattttagCTCCGAAGGCTGTTGTCTATCTACAGCATGGGTCAATTGCATCTGCCAATAATTGGATTTGTAACCTGCCCAATAATAGCTTGGCATTCCTTTTGGCTGATAGTGGCTATGATGTATGGCTGGGAAACAGTCGAGGAAACACTTGGTCTAGAAATCACTTAAGATTGTCACCTAAATCACCACAATATTGGGCCTTCACgtgagtggaacctgatttttcatcacacacaagtagctgacagtaggaag Alignment from Spaln_nt2Genome CTCCGAAGGCAGTTGTGTATCTGCAGCATGGCTTAATTGCATCTGCCAATAACTGGATTTGCAACCTGCCCAACAACAGCTTGGCTTTCCTTCTGGCCGATAGTGGTTATGACGTGTGGTTGGGGAACAGCCGAGGAAACACCTGGTCCAGAAATCACCTGAGACTGTCACCTAAATCACCGCAATATTGGGCCTTCAG gaaaagtctgccaggactgtttatgtaattttcttgttgctcaattttagCTCCGAAGGCTGTTGTCTATCTACAGCATGGGTCAATTGCATCTGCCAATAATTGGATTTGTAACCTGCCCAATAATAGCTTGGCATTCCTTTTGGCTGATAGTGGCTATGATGTATGGCTGGGAAACAGTCGAGGAAACACTTGGTCTAGAAATCACTTAAGATTGTCACCTAAATCACCACAATATTGGGCCTTCACgtgagtggaacctgatttttcatcacacacaagtagctgacagtaggaag Alignment from Pairagon CTCCGAAGGCAGTTGTGTATCTGCAGCATGGCTTAATTGCATCTGCCAATAACTGGATTTGCAACCTGCCCAACAACAGCTTGGCTTTCCTTCTGGCCGATAGTGGTTATGACGTGTGGTTGGGGAACAGCCGAGGAAACACCTGGTCCAGAAATCACCTGAGACTGTCACCTAAATCACCGCAATATTGGGCCTTCAG gaaaagtctgccaggactgtttatgtaattttcttgttgctcaattttagCTCCGAAGGCTGTTGTCTATCTACAGCATGGGTCAATTGCATCTGCCAATAATTGGATTTGTAACCTGCCCAATAATAGCTTGGCATTCCTTTTGGCTGATAGTGGCTATGATGTATGGCTGGGAAACAGTCGAGGAAACACTTGGTCTAGAAATCACTTAAGATTGTCACCTAAATCACCACAATATTGGGCCTTCACgtgagtggaacctgatttttcatcacacacaagtagctgacagtaggaag Alignment from Exonerate_protein2genome CTCCGAAGGCAGTTGTGTATCTGCAGCATGGCTTAATTGCATCTGCCAATAACTGGATTTGCAACCTGCCCAACAACAGCTTGGCTTTCCTTCTGGCCGATAGTGGTTATGACGTGTGGTTGGGGAACAGCCGAGGAAACACCTGGTCCAGAAATCACCTGAGACTGTCACCTAAATCACCGCAATATTGGGCCTTCAG gaaaagtctgccaggactgtttatgtaattttcttgttgctcaattttagCTCCGAAGGCTGTTGTCTATCTACAGCATGGGTCAATTGCATCTGCCAATAATTGGATTTGTAACCTGCCCAATAATAGCTTGGCATTCCTTTTGGCTGATAGTGGCTATGATGTATGGCTGGGAAACAGTCGAGGAAACACTTGGTCTAGAAATCACTTAAGATTGTCACCTAAATCACCACAATATTGGGCCTTCACgtgagtggaacctgatttttcatcacacacaagtagctgacagtaggaag Alignment from Exonerate_coding2genome CTCCGAAGGCAGTTGTGTATCTGCAGCATGGCTTAATTGCATCTGCCAATAACTGGATTTGCAACCTGCCCAACAACAGCTTGGCTTTCCTTCTGGCCGATAGTGGTTATGACGTGTGGTTGGGGAACAGCCGAGGAAACACCTGGTCCAGAAATCACCTGAGACTGTCACCTAAATCACCGCAATATTGGGCCTTCAG gaaaagtctgccaggactgtttatgtaattttcttgttgctcaattttagCTCCGAAGGCTGTTGTCTATCTACAGCATGGGTCAATTGCATCTGCCAATAATTGGATTTGTAACCTGCCCAATAATAGCTTGGCATTCCTTTTGGCTGATAGTGGCTATGATGTATGGCTGGGAAACAGTCGAGGAAACACTTGGTCTAGAAATCACTTAAGATTGTCACCTAAATCACCACAATATTGGGCCTTCACgtgagtggaacctgatttttcatcacacacaagtagctgacagtaggaag Alignment from GeneWise CTCCGAAGGCAGTTGTGTATCTGCAGCATGGCTTAATTGCATCTGCCAATAACTGGATTTGCAACCTGCCCAACAACAGCTTGGCTTTCCTTCTGGCCGATAGTGGTTATGACGTGTGGTTGGGGAACAGCCGAGGAAACACCTGGTCCAGAAATCACCTGAGACTGTCACCTAAATCACCGCAATATTGGGCCTTCAG gaaaagtctgccaggactgtttatgtaattttcttgttgctcaattttagCTCCGAAGGCTGTTGTCTATCTACAGCATGGGTCAATTGCATCTGCCAATAATTGGATTTGTAACCTGCCCAATAATAGCTTGGCATTCCTTTTGGCTGATAGTGGCTATGATGTATGGCTGGGAAACAGTCGAGGAAACACTTGGTCTAGAAATCACTTAAGATTGTCACCTAAATCACCACAATATTGGGCCTTCACgtgagtggaacctgatttttcatcacacacaagtagctgacagtaggaag #### Lipn_ID6873_5 --> 2 - 0 Original Alignment gaTTTGTAGCCTTTTCCACCATGCCTGAACTGGCGCAAAGAATCAAAATGAATTTTGCCTTGGGTCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACCAATTTGTTTCTACTTCCAAAATCCATAATCAAG aacaataggttactgggataactatgcactcccactcctctgtctctcagggTTTGTAGCATTTTCTACTATGCCTGAACTAGCACAAAGAATCAAAATGAATTTTGCCTTGGGCCCTGTGATCTCATTCAAATATCCTACAAGCATTTTTACTAATCTGTTTCTACTTCCGAAGTCCATCATCAAGgtcaggcattctcagtttcacttggtgacttgagctatagttgacatatg Alignment from CESAR gaTTTGTAGCCTTTTCCACCATGCCTGAACTGGCGCAAAGAATCAAAATGAATTTTGCCTTGGGTCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACCAATTTGTTTCTACTTCCAAAATCCATAATCAAG aacaataggttactgggataactatgcactcccactcctctgtctctcagggTTTGTAGCATTTTCTACTATGCCTGAACTAGCACAAAGAATCAAAATGAATTTTGCCTTGGGCCCTGTGATCTCATTCAAATATCCTACAAGCATTTTTACTAATCTGTTTCTACTTCCGAAGTCCATCATCAAGgtcaggcattctcagtttcacttggtgacttgagctatagttgacatatg Alignment from Spaln_aa2Genome GATTTGTAGCCTTTTCCACCATGCCTGAACTGGCGCAAAGAATCAAAATGAATTTTGCCTTGGGTCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACCAATTTGTTTCTACTTCCAAAATCCATAATCAAG aacaataggttactgggataactatgcactcccactcctctgtctctcagGGTTTGTAGCATTTTCTACTATGCCTGAACTAGCACAAAGAATCAAAATGAATTTTGCCTTGGGCCCTGTGATCTCATTCAAATATCCTACAAGCATTTTTACTAATCTGTTTCTACTTCCGAAGTCCATCATCAAGgtcaggcattctcagtttcacttggtgacttgagctatagttgacatatg Alignment from Spaln_nt2Genome GATTTGTAGCCTTTTCCACCATGCCTGAACTGGCGCAAAGAATCAAAATGAATTTTGCCTTGGGTCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACCAATTTGTTTCTACTTCCAAAATCCATAATCAAG aacaataggttactgggataactatgcactcccactcctctgtctctcagGGTTTGTAGCATTTTCTACTATGCCTGAACTAGCACAAAGAATCAAAATGAATTTTGCCTTGGGCCCTGTGATCTCATTCAAATATCCTACAAGCATTTTTACTAATCTGTTTCTACTTCCGAAGTCCATCATCAAGgtcaggcattctcagtttcacttggtgacttgagctatagttgacatatg Alignment from Pairagon GATTTGTAGCCTTTTCCACCATGCCTGAACTGGCGCAAAGAATCAAAATGAATTTTGCCTTGGGTCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACCAATTTGTTTCTACTTCCAAAATCCATAATCAAG aacaataggttactgggataactatgcactcccactcctctgtctctcagGGTTTGTAGCATTTTCTACTATGCCTGAACTAGCACAAAGAATCAAAATGAATTTTGCCTTGGGCCCTGTGATCTCATTCAAATATCCTACAAGCATTTTTACTAATCTGTTTCTACTTCCGAAGTCCATCATCAAGgtcaggcattctcagtttcacttggtgacttgagctatagttgacatatg Alignment from Exonerate_protein2genome GATTTGTAGCCTTTTCCACCATGCCTGAACTGGCGCAAAGAATCAAAATGAATTTTGCCTTGGGTCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACCAATTTGTTTCTACTTCCAAAATCCATAATCAAG aacaataggttactgggataactatgcactcccactcctctgtctctcagGGTTTGTAGCATTTTCTACTATGCCTGAACTAGCACAAAGAATCAAAATGAATTTTGCCTTGGGCCCTGTGATCTCATTCAAATATCCTACAAGCATTTTTACTAATCTGTTTCTACTTCCGAAGTCCATCATCAAGgtcaggcattctcagtttcacttggtgacttgagctatagttgacatatg Alignment from Exonerate_coding2genome GATTTGTAGCCTTTTCCACCATGCCTGAACTGGCGCAAAGAATCAAAATGAATTTTGCCTTGGGTCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACCAATTTGTTTCTACTTCCAAAATCCATAATCAAG aacaataggttactgggataactatgcactcccactcctctgtctctcagGGTTTGTAGCATTTTCTACTATGCCTGAACTAGCACAAAGAATCAAAATGAATTTTGCCTTGGGCCCTGTGATCTCATTCAAATATCCTACAAGCATTTTTACTAATCTGTTTCTACTTCCGAAGTCCATCATCAAGgtcaggcattctcagtttcacttggtgacttgagctatagttgacatatg Alignment from GeneWise GATTTGTAGCCTTTTCCACCATGCCTGAACTGGCGCAAAGAATCAAAATGAATTTTGCCTTGGGTCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACCAATTTGTTTCTACTTCCAAAATCCATAATCAAG aacaataggttactgggataactatgcactcccactcctctgtctctcagGGTTTGTAGCATTTTCTACTATGCCTGAACTAGCACAAAGAATCAAAATGAATTTTGCCTTGGGCCCTGTGATCTCATTCAAATATCCTACAAGCATTTTTACTAATCTGTTTCTACTTCCGAAGTCCATCATCAAGgtcaggcattctcagtttcacttggtgacttgagctatagttgacatatg #### Lipn_ID6874_6 --> 0 - 0 Original Alignment CTTGTGTTTGGCACCAAAGGTGTCCTTTTAGAAGATAAGAATGCAAGGATGTCATTTATCACATTCTGCAACCAAAAGCTACTCCAACCATTGTGTAGTGAATTTATGTCCTTGTGGGCTGGATTCAACAAAAAAAATATGAATATG ctctaagtactctaggtgtaagccctcatgatgtatttctgtctccgtagCTTGTGTTTGGCACCAAGGATGTGCTTTTGGAGGAGAAGAATGCAAGGATGTCTTTCATTTCACTCTGCAACCAAAAGTTACTTCAGCCATTGTGTACTGAATCTATGTCCTTGTGGGCTGGATTCAACAAAAAGAACATGAATATGgtaaatatccattgcttgtaagaggctttttgttgtggggcctatggact Alignment from CESAR CTTGTGTTTGGCACCAAAGGTGTCCTTTTAGAAGATAAGAATGCAAGGATGTCATTTATCACATTCTGCAACCAAAAGCTACTCCAACCATTGTGTAGTGAATTTATGTCCTTGTGGGCTGGATTCAACAAAAAAAATATGAATATG ctctaagtactctaggtgtaagccctcatgatgtatttctgtctccgtagCTTGTGTTTGGCACCAAGGATGTGCTTTTGGAGGAGAAGAATGCAAGGATGTCTTTCATTTCACTCTGCAACCAAAAGTTACTTCAGCCATTGTGTACTGAATCTATGTCCTTGTGGGCTGGATTCAACAAAAAGAACATGAATATGgtaaatatccattgcttgtaagaggctttttgttgtggggcctatggact Alignment from Spaln_aa2Genome CTTGTGTTTGGCACCAAAGGTGTCCTTTTAGAAGATAAGAATGCAAGGATGTCATTTATCACATTCTGCAACCAAAAGCTACTCCAACCATTGTGTAGTGAATTTATGTCCTTGTGGGCTGGATTCAACAAAAAAAATATGAATATG ctctaagtactctaggtgtaagccctcatgatgtatttctgtctccgtagCTTGTGTTTGGCACCAAGGATGTGCTTTTGGAGGAGAAGAATGCAAGGATGTCTTTCATTTCACTCTGCAACCAAAAGTTACTTCAGCCATTGTGTACTGAATCTATGTCCTTGTGGGCTGGATTCAACAAAAAGAACATGAATATGgtaaatatccattgcttgtaagaggctttttgttgtggggcctatggact Alignment from Spaln_nt2Genome CTTGTGTTTGGCACCAAAGGTGTCCTTTTAGAAGATAAGAATGCAAGGATGTCATTTATCACATTCTGCAACCAAAAGCTACTCCAACCATTGTGTAGTGAATTTATGTCCTTGTGGGCTGGATTCAACAAAAAAAATATGAATATG ctctaagtactctaggtgtaagccctcatgatgtatttctgtctccgtagCTTGTGTTTGGCACCAAGGATGTGCTTTTGGAGGAGAAGAATGCAAGGATGTCTTTCATTTCACTCTGCAACCAAAAGTTACTTCAGCCATTGTGTACTGAATCTATGTCCTTGTGGGCTGGATTCAACAAAAAGAACATGAATATGgtaaatatccattgcttgtaagaggctttttgttgtggggcctatggact Alignment from Pairagon CTTGTGTTTGGCACCAAAGGTGTCCTTTTAGAAGATAAGAATGCAAGGATGTCATTTATCACATTCTGCAACCAAAAGCTACTCCAACCATTGTGTAGTGAATTTATGTCCTTGTGGGCTGGATTCAACAAAAAAAATATGAATATG ctctaagtactctaggtgtaagccctcatgatgtatttctgtctccgtagCTTGTGTTTGGCACCAAGGATGTGCTTTTGGAGGAGAAGAATGCAAGGATGTCTTTCATTTCACTCTGCAACCAAAAGTTACTTCAGCCATTGTGTACTGAATCTATGTCCTTGTGGGCTGGATTCAACAAAAAGAACATGAATATGgtaaatatccattgcttgtaagaggctttttgttgtggggcctatggact Alignment from Exonerate_protein2genome CTTGTGTTTGGCACCAAAGGTGTCCTTTTAGAAGATAAGAATGCAAGGATGTCATTTATCACATTCTGCAACCAAAAGCTACTCCAACCATTGTGTAGTGAATTTATGTCCTTGTGGGCTGGATTCAACAAAAAAAATATGAATATG ctctaagtactctaggtgtaagccctcatgatgtatttctgtctccgtagCTTGTGTTTGGCACCAAGGATGTGCTTTTGGAGGAGAAGAATGCAAGGATGTCTTTCATTTCACTCTGCAACCAAAAGTTACTTCAGCCATTGTGTACTGAATCTATGTCCTTGTGGGCTGGATTCAACAAAAAGAACATGAATATGgtaaatatccattgcttgtaagaggctttttgttgtggggcctatggact Alignment from Exonerate_coding2genome CTTGTGTTTGGCACCAAAGGTGTCCTTTTAGAAGATAAGAATGCAAGGATGTCATTTATCACATTCTGCAACCAAAAGCTACTCCAACCATTGTGTAGTGAATTTATGTCCTTGTGGGCTGGATTCAACAAAAAAAATATGAATATG ctctaagtactctaggtgtaagccctcatgatgtatttctgtctccgtagCTTGTGTTTGGCACCAAGGATGTGCTTTTGGAGGAGAAGAATGCAAGGATGTCTTTCATTTCACTCTGCAACCAAAAGTTACTTCAGCCATTGTGTACTGAATCTATGTCCTTGTGGGCTGGATTCAACAAAAAGAACATGAATATGgtaaatatccattgcttgtaagaggctttttgttgtggggcctatggact Alignment from GeneWise CTTGTGTTTGGCACCAAAGGTGTCCTTTTAGAAGATAAGAATGCAAGGATGTCATTTATCACATTCTGCAACCAAAAGCTACTCCAACCATTGTGTAGTGAATTTATGTCCTTGTGGGCTGGATTCAACAAAAAAAATATGAATATG ctctaagtactctaggtgtaagccctcatgatgtatttctgtctccgtagCTTGTGTTTGGCACCAAGGATGTGCTTTTGGAGGAGAAGAATGCAAGGATGTCTTTCATTTCACTCTGCAACCAAAAGTTACTTCAGCCATTGTGTACTGAATCTATGTCCTTGTGGGCTGGATTCAACAAAAAGAACATGAATATGgtaaatatccattgcttgtaagaggctttttgttgtggggcctatggact #### Loxl4_ID8561_12 --> 2 - 0 Original Alignment gaGTGCAGCGGCGCTATGCATGTGCCAACTTTGGGGAACAGGGAGTGGCTGTAGGCTGCTGGGACACCTACCGGCATGACATCGATTGCCAGTGGGTGGATATCACAGATGTGGGTCCAGGGGACTATATCTTCCAG aaaatgcccaggcatttctgcctctgctttgtcttctttttctcccatagggGTACAACGTCGCTATGCATATGCTAATTTCGGAGAGCAAGGGGTTGCAGTAGGTTGCTGGGACACCTATCAGCATGACAGTGATTGTCAGTGGGTGGATATCAAAGAG---GTTCCAGGGGACTACATCTTCCAGgtactgatcaggccaggacatacactccaggttttactgtacgttgattc Alignment from CESAR gaGTGCAGCGGCGCTATGCATGTGCCAACTTTGGGGAACAGGGAGTGGCTGTAGGCTGCTGGGACACCTACCGGCATGACATCGATTGCCAGTGGGTGGATATCACAGATGTGGGTCCAGGGGACTATATCTTCCAG aaaatgcccaggcatttctgcctctgctttgtcttctttttctcccatagggGTACAACGTCGCTATGCATATGCTAATTTCGGAGAGCAAGGGGTTGCAGTAGGTTGCTGGGACACCTATCAGCATGACAGTGATTGTCAGTGGGTGGATATCAAAGAGGTT---CCAGGGGACTACATCTTCCAGgtactgatcaggccaggacatacactccaggttttactgtacgttgattc Alignment from Spaln_aa2Genome GAGTGCAGCGGCGCTATGCATGTGCCAACTTTGGGGAACAGGGAGTGGCTGTAGGCTGCTGGGACACCTACCGGCATGACATCGATTGCCAGTGGGTGGATATCACAGATGTGGGTCCAGGGGACTATATCTTCCAG aaaatgcccaggcatttctgcctctgctttgtcttctttttctcccatagGGGTACAACGTCGCTATGCATATGCTAATTTCGGAGAGCAAGGGGTTGCAGTAGGTTGCTGGGACACCTATCAGCATGACAGTGATTGTCAGTGGGTGGATATCAAAGAGGTT---CCAGGGGACTACATCTTCCAGgtactgatcaggccaggacatacactccaggttttactgtacgttgattc Alignment from Spaln_nt2Genome GAGTGCAGCGGCGCTATGCATGTGCCAACTTTGGGGAACAGGGAGTGGCTGTAGGCTGCTGGGACACCTACCGGCATGACATCGATTGCCAGTGGGTGGATATCACAGATGTGGGTCCAGGGGACTATATCTTCCAG aaaatgcccaggcatttctgcctctgctttgtcttctttttctcccatagGGGTACAACGTCGCTATGCATATGCTAATTTCGGAGAGCAAGGGGTTGCAGTAGGTTGCTGGGACACCTATCAGCATGACAGTGATTGTCAGTGGGTGGATATCAAAGA---GGTTCCAGGGGACTACATCTTCCAGgtactgatcaggccaggacatacactccaggttttactgtacgttgattc Alignment from Pairagon GAGTGCAGCGGCGCTATGCATGTGCCAACTTTGGGGAACAGGGAGTGGCTGTAGGCTGCTGGGACACCTACCGGCATGACATCGATTGCCAGTGGGTGGATATCACAGATGTGGGTCCAGGGGACTATATCTTCCAG aaaatgcccaggcatttctgcctctgctttgtcttctttttctcccatagGGGTACAACGTCGCTATGCATATGCTAATTTCGGAGAGCAAGGGGTTGCAGTAGGTTGCTGGGACACCTATCAGCATGACAGTGATTGTCAGTGGGTGGATATCAAAGAGGT---TCCAGGGGACTACATCTTCCAGgtactgatcaggccaggacatacactccaggttttactgtacgttgattc Alignment from Exonerate_protein2genome GAGTGCAGCGGCGCTATGCATGTGCCAACTTTGGGGAACAGGGAGTGGCTGTAGGCTGCTGGGACACCTACCGGCATGACATCGATTGCCAGTGGGTGGATATCACAGATGTGGGTCCAGGGGACTATATCTTCCAG aaaatgcccaggcatttctgcctctgctttgtcttctttttctcccatagGGGTACAACGTCGCTATGCATATGCTAATTTCGGAGAGCAAGGGGTTGCAGTAGGTTGCTGGGACACCTATCAGCATGACAGTGATTGTCAGTGGGTGGATATCAAAGAGGTT---CCAGGGGACTACATCTTCCAGgtactgatcaggccaggacatacactccaggttttactgtacgttgattc Alignment from Exonerate_coding2genome aaaatgcccaggcatttctgcctctgctttgtcttctttttctcccataggggtacaacgtcgctatgcatatgctaatttcggagagcaaggggttgcagtaggttgctgggacacctatcagcatgacagtgattgtcagtgggtggatatcaaagaggttccaggggactacatcttccaggtactgatcaggccaggacatacactccaggttttactgtacgttgattc Alignment from GeneWise GAGTGCAGCGGCGCTATGCATGTGCCAACTTTGGGGAACAGGGAGTGGCTGTAGGCTGCTGGGACACCTACCGGCATGACATCGATTGCCAGTGGGTGGATATCACAGATGTGGGTCCAGGGGACTATATCTTCCAG aaaatgcccaggcatttctgcctctgctttgtcttctttttctcccatagGGGTACAACGTCGCTATGCATATGCTAATTTCGGAGAGCAAGGGGTTGCAGTAGGTTGCTGGGACACCTATCAGCATGACAGTGATTGTCAGTGGGTGGATATCAAAGAGGTT---CCAGGGGACTACATCTTCCAGgtactgatcaggccaggacatacactccaggttttactgtacgttgattc #### Loxl4_ID8565_10 --> 2 - 2 Original Alignment gtGCTCCAGACCTCGTGATGAACGCCCAGCTGGTACAAGAGACGGCGTACTTGGAGGATCGTCCACTCAGCATGCTGTACTGTGCTCACGAGGAAAACTGCCTTTCCAAGTCCGCTGATCACATGGACTGGCCCTACGGGTACCGGCGCTTGCTGCGCTTCTCCTCACAGATCTACAACCTTGGCCGGGCCGACTTCCGTCCCAAGGCTGGACGCCACAGCTGGATTTGGCACCAGTGCCACag gcattgactatctaaagtctgaccccccacattccaactcttctcttcaggtGCCCCTGACCTTGTTATGAACGCCCAACTGGTACAAGAGACTCAGTATTTGGAGGACCGTCCACTCAGCATGCTATACTGTGCCCATGAGGAAAATTGCCTTTCCAAGTCTGCTGATCACATGGATTGGCCTTATGGGTACCAAGGCTTGCTACACTTCTCTTCCCAAATTTACAACCTTGGGCAAGCTGATTTCCGTCCCAAGGCTGGGCGCCACAGTTGGATATGGCACCAATGCCACcggtaaggccagactagactttgccctggctctaaggtctggagtaggtccg Alignment from CESAR gtGCTCCAGACCTCGTGATGAACGCCCAGCTGGTACAAGAGACGGCGTACTTGGAGGATCGTCCACTCAGCATGCTGTACTGTGCTCACGAGGAAAACTGCCTTTCCAAGTCCGCTGATCACATGGACTGGCCCTACGGGTACCGGCGCTTGCTGCGCTTCTCCTCACAGATCTACAACCTTGGCCGGGCCGACTTCCGTCCCAAGGCTGGACGCCACAGCTGGATTTGGCACCAGTGCCACag gcattgactatctaaagtctgaccccccacattccaactcttctcttcaggtGCCCCTGACCTTGTTATGAACGCCCAACTGGTACAAGAGACTCAGTATTTGGAGGACCGTCCACTCAGCATGCTATACTGTGCCCATGAGGAAAATTGCCTTTCCAAGTCTGCTGATCACATGGATTGGCCTTATGGGTACCAAGGCTTGCTACACTTCTCTTCCCAAATTTACAACCTTGGGCAAGCTGATTTCCGTCCCAAGGCTGGGCGCCACAGTTGGATATGGCACCAATGCCACcggtaaggccagactagactttgccctggctctaaggtctggagtaggtccg Alignment from Spaln_aa2Genome GTGCTCCAGACCTCGTGATGAACGCCCAGCTGGTACAAGAGACGGCGTACTTGGAGGATCGTCCACTCAGCATGCTGTACTGTGCTCACGAGGAAAACTGCCTTTCCAAGTCCGCTGATCACATGGACTGGCCCTACGGGTACCGGCGCTTGCTGCGCTTCTCCTCACAGATCTACAACCTTGGCCGGGCCGACTTCCGTCCCAAGGCTGGACGCCACAGCTGGATTTGGCACCAGTGCCACAG gcattgactatctaaagtctgaccccccacattccaactcttctcttcagGTGCCCCTGACCTTGTTATGAACGCCCAACTGGTACAAGAGACTCAGTATTTGGAGGACCGTCCACTCAGCATGCTATACTGTGCCCATGAGGAAAATTGCCTTTCCAAGTCTGCTGATCACATGGATTGGCCTTATGGGTACCAAGGCTTGCTACACTTCTCTTCCCAAATTTACAACCTTGGGCAAGCTGATTTCCGTCCCAAGGCTGGGCGCCACAGTTGGATATGGCACCAATGCCACCGgtaaggccagactagactttgccctggctctaaggtctggagtaggtccg Alignment from Spaln_nt2Genome GTGCTCCAGACCTCGTGATGAACGCCCAGCTGGTACAAGAGACGGCGTACTTGGAGGATCGTCCACTCAGCATGCTGTACTGTGCTCACGAGGAAAACTGCCTTTCCAAGTCCGCTGATCACATGGACTGGCCCTACGGGTACCGGCGCTTGCTGCGCTTCTCCTCACAGATCTACAACCTTGGCCGGGCCGACTTCCGTCCCAAGGCTGGACGCCACAGCTGGATTTGGCACCAGTGCCACAG gcattgactatctaaagtctgaccccccacattccaactcttctcttcagGTGCCCCTGACCTTGTTATGAACGCCCAACTGGTACAAGAGACTCAGTATTTGGAGGACCGTCCACTCAGCATGCTATACTGTGCCCATGAGGAAAATTGCCTTTCCAAGTCTGCTGATCACATGGATTGGCCTTATGGGTACCAAGGCTTGCTACACTTCTCTTCCCAAATTTACAACCTTGGGCAAGCTGATTTCCGTCCCAAGGCTGGGCGCCACAGTTGGATATGGCACCAATGCCACCGgtaaggccagactagactttgccctggctctaaggtctggagtaggtccg Alignment from Pairagon GTGCTCCAGACCTCGTGATGAACGCCCAGCTGGTACAAGAGACGGCGTACTTGGAGGATCGTCCACTCAGCATGCTGTACTGTGCTCACGAGGAAAACTGCCTTTCCAAGTCCGCTGATCACATGGACTGGCCCTACGGGTACCGGCGCTTGCTGCGCTTCTCCTCACAGATCTACAACCTTGGCCGGGCCGACTTCCGTCCCAAGGCTGGACGCCACAGCTGGATTTGGCACCAGTGCCACAG gcattgactatctaaagtctgaccccccacattccaactcttctcttcagGTGCCCCTGACCTTGTTATGAACGCCCAACTGGTACAAGAGACTCAGTATTTGGAGGACCGTCCACTCAGCATGCTATACTGTGCCCATGAGGAAAATTGCCTTTCCAAGTCTGCTGATCACATGGATTGGCCTTATGGGTACCAAGGCTTGCTACACTTCTCTTCCCAAATTTACAACCTTGGGCAAGCTGATTTCCGTCCCAAGGCTGGGCGCCACAGTTGGATATGGCACCAATGCCACCGgtaaggccagactagactttgccctggctctaaggtctggagtaggtccg Alignment from Exonerate_protein2genome GTGCTCCAGACCTCGTGATGAACGCCCAGCTGGTACAAGAGACGGCGTACTTGGAGGATCGTCCACTCAGCATGCTGTACTGTGCTCACGAGGAAAACTGCCTTTCCAAGTCCGCTGATCACATGGACTGGCCCTACGGGTACCGGCGCTTGCTGCGCTTCTCCTCACAGATCTACAACCTTGGCCGGGCCGACTTCCGTCCCAAGGCTGGACGCCACAGCTGGATTTGGCACCAGTGCCACAG gcattgactatctaaagtctgaccccccacattccaactcttctcttcagGTGCCCCTGACCTTGTTATGAACGCCCAACTGGTACAAGAGACTCAGTATTTGGAGGACCGTCCACTCAGCATGCTATACTGTGCCCATGAGGAAAATTGCCTTTCCAAGTCTGCTGATCACATGGATTGGCCTTATGGGTACCAAGGCTTGCTACACTTCTCTTCCCAAATTTACAACCTTGGGCAAGCTGATTTCCGTCCCAAGGCTGGGCGCCACAGTTGGATATGGCACCAATGCCACCGgtaaggccagactagactttgccctggctctaaggtctggagtaggtccg Alignment from Exonerate_coding2genome gcattgactatctaaagtctgaccccccacattccaactcttctcttcaggtgcccctgaccttgttatgaacgcccaactggtacaagagactcagtatttggaggaccgtccactcagcatgctatactgtgcccatgaggaaaattgcctttccaagtctgctgatcacatggattggccttatgggtaccaaggcttgctacacttctcttcccaaatttacaaccttgggcaagctgatttccgtcccaaggctgggcgccacagttggatatggcaccaatgccaccggtaaggccagactagactttgccctggctctaaggtctggagtaggtccg Alignment from GeneWise GTGCTCCAGACCTCGTGATGAACGCCCAGCTGGTACAAGAGACGGCGTACTTGGAGGATCGTCCACTCAGCATGCTGTACTGTGCTCACGAGGAAAACTGCCTTTCCAAGTCCGCTGATCACATGGACTGGCCCTACGGGTACCGGCGCTTGCTGCGCTTCTCCTCACAGATCTACAACCTTGGCCGGGCCGACTTCCGTCCCAAGGCTGGACGCCACAGCTGGATTTGGCACCAGTGCCACAG gcattgactatctaaagtctgaccccccacattccaactcttctcttcagGTGCCCCTGACCTTGTTATGAACGCCCAACTGGTACAAGAGACTCAGTATTTGGAGGACCGTCCACTCAGCATGCTATACTGTGCCCATGAGGAAAATTGCCTTTCCAAGTCTGCTGATCACATGGATTGGCCTTATGGGTACCAAGGCTTGCTACACTTCTCTTCCCAAATTTACAACCTTGGGCAAGCTGATTTCCGTCCCAAGGCTGGGCGCCACAGTTGGATATGGCACCAATGCCACCGgtaaggccagactagactttgccctggctctaaggtctggagtaggtccg #### Loxl4_ID8574_2 --> 2 - 0 Original Alignment gtCCCATCTGGCTGGACAATGTTCGTTGTTTGGGCACCGAGAAGACCCTAGATCAGTGTGGCTCTAACGGCTGGGGTGTCAGTGACTGCAGACACTCAGAAGATGTTGGGGTGGTATGTCACCCACGGCGCCAGCACGGATATCACTCTGAGAAGGTCTCCAATGCCCTCGGGCCTCAG agagcaatgaaaatattgcctgtctgggaaattattttctatgtacccagggCCCATCTGGCTTGACAATGTCCGTTTTTTAGGCACTGAGAAGACACAAGATCAATGTGGCTCCAATGGCTGGGGTGTCAGTGACTGCAGACATTCAGAAGATGTTGGGGTAGTGAGTCACTCACAGTGCCAGCAAGCATATCGCTCTGAGAAGGTATCTAAGGCA---CGACCTCAGgtcagacaattgtgtcagcactgccttgtgccaaatgctggatagactgc Alignment from CESAR gtCCCATCTGGCTGGACAATGTTCGTTGTTTGGGCACCGAGAAGACCCTAGATCAGTGTGGCTCTAACGGCTGGGGTGTCAGTGACTGCAGACACTCAGAAGATGTTGGGGTGGTATGTCACCCACGGCGCCAGCACGGATATCACTCTGAGAAGGTCTCCAATGCCCTCGGGCCTCAG agagcaatgaaaatattgcctgtctgggaaattattttctatgtacccagggCCCATCTGGCTTGACAATGTCCGTTTTTTAGGCACTGAGAAGACACAAGATCAATGTGGCTCCAATGGCTGGGGTGTCAGTGACTGCAGACATTCAGAAGATGTTGGGGTAGTGAGTCACTCACAGTGCCAGCAAGCATATCGCTCTGAGAAGGTATCTAAGGCA---CGACCTCAGgtcagacaattgtgtcagcactgccttgtgccaaatgctggatagactgc Alignment from Spaln_aa2Genome GTCCCATCTGGCTGGACAATGTTCGTTGTTTGGGCACCGAGAAGACCCTAGATCAGTGTGGCTCTAACGGCTGGGGTGTCAGTGACTGCAGACACTCAGAAGATGTTGGGGTGGTATGTCACCCACGGCGCCAGCACGGATATCACTCTGAGAAGGTCTCCAATGCCCTCGGGCCTCAG agagcaatgaaaatattgcctgtctgggaaattattttctatgtacccagGGCCCATCTGGCTTGACAATGTCCGTTTTTTAGGCACTGAGAAGACACAAGATCAATGTGGCTCCAATGGCTGGGGTGTCAGTGACTGCAGACATTCAGAAGATGTTGGGGTAGTGAGTCACTCACAGTGCCAGCAAGCATATCGCTCTGAGAAGGTATCTAAGGCA---CGACCTCAGgtcagacaattgtgtcagcactgccttgtgccaaatgctggatagactgc Alignment from Spaln_nt2Genome GTCCCATCTGGCTGGACAATGTTCGTTGTTTGGGCACCGAGAAGACCCTAGATCAGTGTGGCTCTAACGGCTGGGGTGTCAGTGACTGCAGACACTCAGAAGATGTTGGGGTGGTATGTCACCCACGGCGCCAGCACGGATATCACTCTGAGAAGGTCTCCAATGCCCTCGGGCCTCAG agagcaatgaaaatattgcctgtctgggaaattattttctatgtacccagGGCCCATCTGGCTTGACAATGTCCGTTTTTTAGGCACTGAGAAGACACAAGATCAATGTGGCTCCAATGGCTGGGGTGTCAGTGACTGCAGACATTCAGAAGATGTTGGGGTAGTGAGTCACTCACAGTGCCAGCAAGCATATCGCTCTGAGAAGGTATCTAAGGCAC---GACCTCAGgtcagacaattgtgtcagcactgccttgtgccaaatgctggatagactgc Alignment from Pairagon GTCCCATCTGGCTGGACAATGTTCGTTGTTTGGGCACCGAGAAGACCCTAGATCAGTGTGGCTCTAACGGCTGGGGTGTCAGTGACTGCAGACACTCAGAAGATGTTGGGGTGGTATGTCACCCACGGCGCCAGCACGGATATCACTCTGAGAAGGTCTCCAATGCCCTCGGGCCTCAG agagcaatgaaaatattgcctgtctgggaaattattttctatgtacccagGGCCCATCTGGCTTGACAATGTCCGTTTTTTAGGCACTGAGAAGACACAAGATCAATGTGGCTCCAATGGCTGGGGTGTCAGTGACTGCAGACATTCAGAAGATGTTGGGGTAGTGAGTCACTCACAGTGCCAGCAAGCATATCGCTCTGAGAAGGTATCTAAGGCAC---GACCTCAGgtcagacaattgtgtcagcactgccttgtgccaaatgctggatagactgc Alignment from Exonerate_protein2genome GTCCCATCTGGCTGGACAATGTTCGTTGTTTGGGCACCGAGAAGACCCTAGATCAGTGTGGCTCTAACGGCTGGGGTGTCAGTGACTGCAGACACTCAGAAGATGTTGGGGTGGTATGTCACCCACGGCGCCAGCACGGATATCACTCTGAGAAGGTCTCCAATGCCCTCGGGCCTCAG agagcaatgaaaatattgcctgtctgggaaattattttctatgtacccagGGCCCATCTGGCTTGACAATGTCCGTTTTTTAGGCACTGAGAAGACACAAGATCAATGTGGCTCCAATGGCTGGGGTGTCAGTGACTGCAGACATTCAGAAGATGTTGGGGTAGTGAGTCACTCACAGTGCCAGCAAGCATATCGCTCTGAGAAGGTATCTAAGGCA---CGACCTCAGgtcagacaattgtgtcagcactgccttgtgccaaatgctggatagactgc Alignment from Exonerate_coding2genome GTCCCATCTGGCTGGACAATGTTCGTTGTTTGGGCACCGAGAAGACCCTAGATCAGTGTGGCTCTAACGGCTGGGGTGTCAGTGACTGCAGACACTCAGAAGATGTTGGGGTGGTATGTCACCCACGGCGCCAGCACGGATATCACTCTGAGAAGGTCTCCAATGCCCTCGGGCCTCAG agagcaatgaaaatattgcctgtctgggaaattattttctatgtacccagGGCCCATCTGGCTTGACAATGTCCGTTTTTTAGGCACTGAGAAGACACAAGATCAATGTGGCTCCAATGGCTGGGGTGTCAGTGACTGCAGACATTCAGAAGATGTTGGGGTAGTGAGTCACTCACAGTGCCAGCAAGCATATCGCTCTGAGAAGGTATCTAAGGCA---CGACCTCAGgtcagacaattgtgtcagcactgccttgtgccaaatgctggatagactgc Alignment from GeneWise GTCCCATCTGGCTGGACAATGTTCGTTGTTTGGGCACCGAGAAGACCCTAGATCAGTGTGGCTCTAACGGCTGGGGTGTCAGTGACTGCAGACACTCAGAAGATGTTGGGGTGGTATGTCACCCACGGCGCCAGCACGGATATCACTCTGAGAAGGTCTCCAATGCCCTCGGGCCTCAG agagcaatgaaaatattgcctgtctgggaaattattttctatgtacccagGGCCCATCTGGCTTGACAATGTCCGTTTTTTAGGCACTGAGAAGACACAAGATCAATGTGGCTCCAATGGCTGGGGTGTCAGTGACTGCAGACATTCAGAAGATGTTGGGGTAGTGAGTCACTCACAGTGCCAGCAAGCATATCGCTCTGAGAAGGTATCTAAGGCACGA---CCTCAGgtcagacaattgtgtcagcactgccttgtgccaaatgctggatagactgc #### Lpxn_ID3473_6 --> 0 - 0 Original Alignment GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gtcatctgtaatagaaagaggtaagaatgccctgtgtgtttgcatcacagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTCGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGCAGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACATTGTGCCTACTGTGCTACTCCCATCACAGATgtgagtgatgtcccatgccagtagtaaacacatattgtaattaccctctg Alignment from CESAR GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gtcatctgtaatagaaagaggtaagaatgccctgtgtgtttgcatcacagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTCGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGCAGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACATTGTGCCTACTGTGCTACTCCCATCACAGATgtgagtgatgtcccatgccagtagtaaacacatattgtaattgtgctttg Alignment from Spaln_aa2Genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gtcatctgtaatagaaagaggtaagaatgccctgtgtgtttgcatcacagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTCGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGCAGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACATTGTGCCTACTGTGCTACTCCCATCACAGATgtgagtgatgtcccatgccagtagtaaacacatattgtaattaccctctg Alignment from Spaln_nt2Genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gtcatctgtaatagaaagaggtaagaatgccctgtgtgtttgcatcacagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTCGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGCAGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACATTGTGCCTACTGTGCTACTCCCATCACAGATgtgagtgatgtcccatgccagtagtaaacacatattgtaattaccctctg Alignment from Pairagon GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gtcatctgtaatagaaagaggtaagaatgccctgtgtgtttgcatcacagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTCGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGCAGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACATTGTGCCTACTGTGCTACTCCCATCACAGATgtgagtgatgtcccatgccagtagtaaacacatattgtaattaccctctg Alignment from Exonerate_protein2genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gtcatctgtaatagaaagaggtaagaatgccctgtgtgtttgcatcacagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTCGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGCAGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACATTGTGCCTACTGTGCTACTCCCATCACAGATgtgagtgatgtcccatgccagtagtaaacacatattgtaattaccctctg Alignment from Exonerate_coding2genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gtcatctgtaatagaaagaggtaagaatgccctgtgtgtttgcatcacagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTCGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGCAGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACATTGTGCCTACTGTGCTACTCCCATCACAGATgtgagtgatgtcccatgccagtagtaaacacatattgtaattaccctctg Alignment from GeneWise GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gtcatctgtaatagaaagaggtaagaatgccctgtgtgtttgcatcacagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTCGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGCAGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACATTGTGCCTACTGTGCTACTCCCATCACAGATgtgagtgatgtcccatgccagtagtaaacacatattgtaattaccctctg #### Lrp5_ID103_21 --> 2 - 0 Original Alignment gcATCCCGTGCAGCAAGTCCGTGATGAGCTCCATGAGCCTGGTGGGGGGGCGCGGCAGTGTGCCCCTCTATGACCGGAATCACGTCACTGGGGCCTCATCCAGCAGCTCGTCCAGCACAAAGGCCACACTATATCCGCCG gaacagactggacaggtctaataccatgctgattcgatctttctacacaggcATTCCTTTTAGCAAGTCTGTGATGAGTTCCATGAGTCTGGTGGGGGGGCACGGTAGTGTGCCACTTTACGATCAGAATCATAGCACTAGCGCTTTGTCTAGCAGTTCACCCAGCACAAAAGCAATGTTATACCCCCCAgtcagaggtttgttggcagttggtggattggatatggctcaagagctcaa Alignment from CESAR gcATCCCGTGCAGCAAGTCCGTGATGAGCTCCATGAGCCTGGTGGGGGGGCGCGGCAGTGTGCCCCTCTATGACCGGAATCACGTCACTGGGGCCTCATCCAGCAGCTCGTCCAGCACAAAGGCCACACTATATCCGCCG gaacagactggacaggtctaataccatgctgattcgatctttctacacaggcATTCCTTTTAGCAAGTCTGTGATGAGTTCCATGAGTCTGGTGGGGGGGCACGGTAGTGTGCCACTTTACGATCAGAATCATAGCACTAGCGCTTTGTCTAGCAGTTCACCCAGCACAAAAGCAATGTTATACCCCCCAgtcagaggtttgttggcagttggtggattggatatggctcaagagctcaa Alignment from Spaln_aa2Genome GCATCCCGTGCAGCAAGTCCGTGATGAGCTCCATGAGCCTGGTGGGGGGGCGCGGCAGTGTGCCCCTCTATGACCGGAATCACGTCACTGGGGCCTCATCCAGCAGCTCGTCCAGCACAAAGGCCACACTATATCCGCCG gaacagactggacaggtctaataccatgctgattcgatctttctacacagGCATTCCTTTTAGCAAGTCTGTGATGAGTTCCATGAGTCTGGTGGGGGGGCACGGTAGTGTGCCACTTTACGATCAGAATCATAGCACTAGCGCTTTGTCTAGCAGTTCACCCAGCACAAAAGCAATGTTATACCCCCCAgtcagaggtttgttggcagttggtggattggatatggctcaagagctcaa Alignment from Spaln_nt2Genome GCATCCCGTGCAGCAAGTCCGTGATGAGCTCCATGAGCCTGGTGGGGGGGCGCGGCAGTGTGCCCCTCTATGACCGGAATCACGTCACTGGGGCCTCATCCAGCAGCTCGTCCAGCACAAAGGCCACACTATATCCGCCG gaacagactggacaggtctaataccatgctgattcgatctttctacacagGCATTCCTTTTAGCAAGTCTGTGATGAGTTCCATGAGTCTGGTGGGGGGGCACGGTAGTGTGCCACTTTACGATCAGAATCATAGCACTAGCGCTTTGTCTAGCAGTTCACCCAGCACAAAAGCAATGTTATACCCCCCAgtcagaggtttgttggcagttggtggattggatatggctcaagagctcaa Alignment from Pairagon GCATCCCGTGCAGCAAGTCCGTGATGAGCTCCATGAGCCTGGTGGGGGGGCGCGGCAGTGTGCCCCTCTATGACCGGAATCACGTCACTGGGGCCTCATCCAGCAGCTCGTCCAGCACAAAGGCCACACTATATCCGCCG gaacagactggacaggtctaataccatgctgattcgatctttctacacagGCATTCCTTTTAGCAAGTCTGTGATGAGTTCCATGAGTCTGGTGGGGGGGCACGGTAGTGTGCCACTTTACGATCAGAATCATAGCACTAGCGCTTTGTCTAGCAGTTCACCCAGCACAAAAGCAATGTTATACCCCCCAgtcagaggtttgttggcagttggtggattggatatggctcaagagctcaa Alignment from Exonerate_protein2genome GCATCCCGTGCAGCAAGTCCGTGATGAGCTCCATGAGCCTGGTGGGGGGGCGCGGCAGTGTGCCCCTCTATGACCGGAATCACGTCACTGGGGCCTCATCCAGCAGCTCGTCCAGCACAAAGGCCACACTATATCCGCCG gaacagactggacaggtctaataccatgctgattcgatctttctacacagGCATTCCTTTTAGCAAGTCTGTGATGAGTTCCATGAGTCTGGTGGGGGGGCACGGTAGTGTGCCACTTTACGATCAGAATCATAGCACTAGCGCTTTGTCTAGCAGTTCACCCAGCACAAAAGCAATGTTATACCCCCCAgtcagaggtttgttggcagttggtggattggatatggctcaagagctcaa Alignment from Exonerate_coding2genome GCATCCCGTGCAGCAAGTCCGTGATGAGCTCCATGAGCCTGGTGGGGGGGCGCGGCAGTGTGCCCCTCTATGACCGGAATCACGTCACTGGGGCCTCATCCAGCAGCTCGTCCAGCACAAAGGCCACACTATATCCGCCGATC gaacagactggacaggtctaataccatgctgattcgatctttctacacagGCATTCCTTTTAGCAAGTCTGTGATGAGTTCCATGAGTCTGGTGGGGGGGCACGGTAGTGTGCCACTTTACGATCAGAATCATAGCACTAGCGCTTTGTCTAGCAGTTCACCCAGCACAAAAGCAATGTTATACCCCCCAGTCagaggtttgttggcagttggtggattggatatggctcaagagctcaa Alignment from GeneWise GCATCCCGTGCAGCAAGTCCGTGATGAGCTCCATGAGCCTGGTGGGGGGGCGCGGCAGTGTGCCCCTCTATGACCGGAATCACGTCACTGGGGCCTCATCCAGCAGCTCGTCCAGCACAAAGGCCACACTATATCCGCCG gaacagactggacaggtctaataccatgctgattcgatctttctacacagGCATTCCTTTTAGCAAGTCTGTGATGAGTTCCATGAGTCTGGTGGGGGGGCACGGTAGTGTGCCACTTTACGATCAGAATCATAGCACTAGCGCTTTGTCTAGCAGTTCACCCAGCACAAAAGCAATGTTATACCCCCCAgtcagaggtttgttggcagttggtggattggatatggctcaagagctcaa #### Lrp5_ID104_20 --> 2 - 1 Original Alignment aaATCAACAAGCCACCCTCTGATGACATCCCAGCCCACAGCAGTGCCATTGGGCCCGTCATTGGTATCATCCTCTCCCTCTTCGTCATGGGCGGGGTCTACTTTGTCTGCCAGCGTGTGATGTGCCAGCGCTACACAGGGGCCAGTGGGCCCTTTCCCCACGAGTATGTTGGTGGAGCCCCTCATGTGCCTCTCAACTTCATAGCCCCAGGTGGCTCACAGCACGGTCCCTTCCCAg ccacctatgtatccagaagaagagcctcattcatttctgaacattgttagaaATCAATAAGCCCCCTTCAGATGACATCCCAGCTCATAGCAGTGCTATAGGGCCAGTCATTGGCATTATTCTTCCCCTTTTCATCATGGGTGGGGTCTACTTTGTTTGTCACCGCGTGATGTGCCAGCACTATACAGGAGCCAGTGGACCCTTTCCCTATGAATACATAGGTGGGGCCCCTCATGTGCCACTCAACTTTATAGCACCAGGCACTTCACAACATGGTCCATTTCCAggtaaatataacttggtggcaacctatcttattattaaaggctctgctggt Alignment from CESAR aaATCAACAAGCCACCCTCTGATGACATCCCAGCCCACAGCAGTGCCATTGGGCCCGTCATTGGTATCATCCTCTCCCTCTTCGTCATGGGCGGGGTCTACTTTGTCTGCCAGCGTGTGATGTGCCAGCGCTACACAGGGGCCAGTGGGCCCTTTCCCCACGAGTATGTTGGTGGAGCCCCTCATGTGCCTCTCAACTTCATAGCCCCAGGTGGCTCACAGCACGGTCCCTTCCCAg ccacctatgtatccagaagaagagcctcattcatttctgaacattgttagaaATCAATAAGCCCCCTTCAGATGACATCCCAGCTCATAGCAGTGCTATAGGGCCAGTCATTGGCATTATTCTTCCCCTTTTCATCATGGGTGGGGTCTACTTTGTTTGTCACCGCGTGATGTGCCAGCACTATACAGGAGCCAGTGGACCCTTTCCCTATGAATACATAGGTGGGGCCCCTCATGTGCCACTCAACTTTATAGCACCAGGCACTTCACAACATGGTCCATTTCCAggtaaatataacttggtggcaacctatcttattattaaaggctctgctggt Alignment from Spaln_aa2Genome AAATCAACAAGCCACCCTCTGATGACATCCCAGCCCACAGCAGTGCCATTGGGCCCGTCATTGGTATCATCCTCTCCCTCTTCGTCATGGGCGGGGTCTACTTTGTCTGCCAGCGTGTGATGTGCCAGCGCTACACAGGGGCCAGTGGGCCCTTTCCCCACGAGTATGTTGGTGGAGCCCCTCATGTGCCTCTCAACTTCATAGCCCCAGGTGGCTCACAGCACGGTCCCTTCCCAG ccacctatgtatccagaagaagagcctcattcatttctgaacattgttagAAATCAATAAGCCCCCTTCAGATGACATCCCAGCTCATAGCAGTGCTATAGGGCCAGTCATTGGCATTATTCTTCCCCTTTTCATCATGGGTGGGGTCTACTTTGTTTGTCACCGCGTGATGTGCCAGCACTATACAGGAGCCAGTGGACCCTTTCCCTATGAATACATAGGTGGGGCCCCTCATGTGCCACTCAACTTTATAGCACCAGGCACTTCACAACATGGTCCATTTCCAGgtaaatataacttggtggcaacctatcttattattaaaggctctgctggt Alignment from Spaln_nt2Genome AAATCAACAAGCCACCCTCTGATGACATCCCAGCCCACAGCAGTGCCATTGGGCCCGTCATTGGTATCATCCTCTCCCTCTTCGTCATGGGCGGGGTCTACTTTGTCTGCCAGCGTGTGATGTGCCAGCGCTACACAGGGGCCAGTGGGCCCTTTCCCCACGAGTATGTTGGTGGAGCCCCTCATGTGCCTCTCAACTTCATAGCCCCAGGTGGCTCACAGCACGGTCCCTTCCCAG ccacctatgtatccagaagaagagcctcattcatttctgaacattgttagAAATCAATAAGCCCCCTTCAGATGACATCCCAGCTCATAGCAGTGCTATAGGGCCAGTCATTGGCATTATTCTTCCCCTTTTCATCATGGGTGGGGTCTACTTTGTTTGTCACCGCGTGATGTGCCAGCACTATACAGGAGCCAGTGGACCCTTTCCCTATGAATACATAGGTGGGGCCCCTCATGTGCCACTCAACTTTATAGCACCAGGCACTTCACAACATGGTCCATTTCCAGgtaaatataacttggtggcaacctatcttattattaaaggctctgctggt Alignment from Pairagon AAATCAACAAGCCACCCTCTGATGACATCCCAGCCCACAGCAGTGCCATTGGGCCCGTCATTGGTATCATCCTCTCCCTCTTCGTCATGGGCGGGGTCTACTTTGTCTGCCAGCGTGTGATGTGCCAGCGCTACACAGGGGCCAGTGGGCCCTTTCCCCACGAGTATGTTGGTGGAGCCCCTCATGTGCCTCTCAACTTCATAGCCCCAGGTGGCTCACAGCACGGTCCCTTCCCAG ccacctatgtatccagaagaagagcctcattcatttctgaacattgttagAAATCAATAAGCCCCCTTCAGATGACATCCCAGCTCATAGCAGTGCTATAGGGCCAGTCATTGGCATTATTCTTCCCCTTTTCATCATGGGTGGGGTCTACTTTGTTTGTCACCGCGTGATGTGCCAGCACTATACAGGAGCCAGTGGACCCTTTCCCTATGAATACATAGGTGGGGCCCCTCATGTGCCACTCAACTTTATAGCACCAGGCACTTCACAACATGGTCCATTTCCAGgtaaatataacttggtggcaacctatcttattattaaaggctctgctggt Alignment from Exonerate_protein2genome AAATCAACAAGCCACCCTCTGATGACATCCCAGCCCACAGCAGTGCCATTGGGCCCGTCATTGGTATCATCCTCTCCCTCTTCGTCATGGGCGGGGTCTACTTTGTCTGCCAGCGTGTGATGTGCCAGCGCTACACAGGGGCCAGTGGGCCCTTTCCCCACGAGTATGTTGGTGGAGCCCCTCATGTGCCTCTCAACTTCATAGCCCCAGGTGGCTCACAGCACGGTCCCTTCCCAG ccacctatgtatccagaagaagagcctcattcatttctgaacattgttagAAATCAATAAGCCCCCTTCAGATGACATCCCAGCTCATAGCAGTGCTATAGGGCCAGTCATTGGCATTATTCTTCCCCTTTTCATCATGGGTGGGGTCTACTTTGTTTGTCACCGCGTGATGTGCCAGCACTATACAGGAGCCAGTGGACCCTTTCCCTATGAATACATAGGTGGGGCCCCTCATGTGCCACTCAACTTTATAGCACCAGGCACTTCACAACATGGTCCATTTCCAGgtaaatataacttggtggcaacctatcttattattaaaggctctgctggt Alignment from Exonerate_coding2genome AAATCAACAAGCCACCCTCTGATGACATCCCAGCCCACAGCAGTGCCATTGGGCCCGTCATTGGTATCATCCTCTCCCTCTTCGTCATGGGCGGGGTCTACTTTGTCTGCCAGCGTGTGATGTGCCAGCGCTACACAGGGGCCAGTGGGCCCTTTCCCCACGAGTATGTTGGTGGAGCCCCTCATGTGCCTCTCAACTTCATAGCCCCAGGTGGCTCACAGCACGGTCCCTTCCCAG ccacctatgtatccagaagaagagcctcattcatttctgaacattgttagAAATCAATAAGCCCCCTTCAGATGACATCCCAGCTCATAGCAGTGCTATAGGGCCAGTCATTGGCATTATTCTTCCCCTTTTCATCATGGGTGGGGTCTACTTTGTTTGTCACCGCGTGATGTGCCAGCACTATACAGGAGCCAGTGGACCCTTTCCCTATGAATACATAGGTGGGGCCCCTCATGTGCCACTCAACTTTATAGCACCAGGCACTTCACAACATGGTCCATTTCCAGgtaaatataacttggtggcaacctatcttattattaaaggctctgctggt Alignment from GeneWise AAATCAACAAGCCACCCTCTGATGACATCCCAGCCCACAGCAGTGCCATTGGGCCCGTCATTGGTATCATCCTCTCCCTCTTCGTCATGGGCGGGGTCTACTTTGTCTGCCAGCGTGTGATGTGCCAGCGCTACACAGGGGCCAGTGGGCCCTTTCCCCACGAGTATGTTGGTGGAGCCCCTCATGTGCCTCTCAACTTCATAGCCCCAGGTGGCTCACAGCACGGTCCCTTCCCAG ccacctatgtatccagaagaagagcctcattcatttctgaacattgttagAAATCAATAAGCCCCCTTCAGATGACATCCCAGCTCATAGCAGTGCTATAGGGCCAGTCATTGGCATTATTCTTCCCCTTTTCATCATGGGTGGGGTCTACTTTGTTTGTCACCGCGTGATGTGCCAGCACTATACAGGAGCCAGTGGACCCTTTCCCTATGAATACATAGGTGGGGCCCCTCATGTGCCACTCAACTTTATAGCACCAGGCACTTCACAACATGGTCCATTTCCAGgtaaatataacttggtggcaacctatcttattattaaaggctctgctggt #### Lrp5_ID106_18 --> 2 - 1 Original Alignment agCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACCACTGGTGAGATCGACTGCATCCCCGGAGCCTGGCGCTGTGACGGCTTCCCTGAGTGTGCTGACCAGAGTGATGAAGAAGGCTGCCCAGTGTGCTCCGCCTCTCAGTTCCCCTGCGCTCGAGGCCAGTGTGTGGACCTGCGGTTACGCTGCGACGGTGAGGCCGACTGCCAGGATCGCTCTGATGAAGCTAACTGCGATg gcatatgaatgtgtcacacactgtctgatattccctctgattttttgtagagCCTCCAACCTGCACCCCTGATCAGTTTGCTTGTACAACTGGACAAATC------ATCCCTGGAGCTTGGCACAGTGATAGCTTCCCT------GCAGACCAGAGTGTTGAAGAAGGCTGTCCTGCATGTTCGGCATCTCAGTTCCCATGTACTCGA---GAGTGTGTT---------------------GGTGAGACAGACTGCCAGGATCGATCTGATGATGCAAACTGTGATggtagataggtgctgcctggcctgaatagacctccaggtcacatgggcagc Alignment from CESAR agCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACCACTGGTGAGATCGACTGCATCCCCGGAGCCTGGCGCTGTGACGGCTTCCCTGAGTGTGCTGACCAGAGTGATGAAGAAGGCTGCCCAGTGTGCTCCGCCTCTCAGTTCCCCTGCGCTCGAGGCCAGTGTGTGGACCTGCGGTTACGCTGCGACGGTGAGGCCGACTGCCAGGATCGCTCTGATGAAGCTAACTGCGATg gcatatgaatgtgtcacacactgtctgatattccctctgattttttgtagagCCTCCAACCTGCACCCCTGATCAGTTTGCTTGTACAACTGGACAAATC------ATCCCTGGAGCTTGGCACAGTGATAGCTTCCCT------GCAGACCAGAGTGTTGAAGAAGGCTGTCCTGCATGTTCGGCATCTCAGTTCCCATGTACTCGA---GAGTGTGTT---------------------GGTGAGACAGACTGCCAGGATCGATCTGATGATGCAAACTGTGATggtagataggtgctgcctggcctgaatagacctccaggtcacatgggcagc Alignment from Spaln_aa2Genome AGCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACCACTGGTGAGATCGACTGCATCCCCGGAGCCTGGCGCTGTGACGGCTTCCCTGAGTGTGCTGACCAGAGTGATGAAGAAGGCTGCCCAGTGTGCTCCGCCTCTCAGTTCCCCTGCGCTCGAGGCCAGTGTGTGGACCTGCGGTTACGCTGCGACGGTGAGGCCGACTGCCAGGATCGCTCTGATGAAGCTAACTGCGATG gcatatgaatgtgtcacacactgtctgatattccctctgattttttgtagAGCCTCCAACCTGCACCCCTGATCAGTTTGCTTGTACAACTGGACAAATC------ATCCCTGGAGCTTGGCACAGTGATAGCTTCCCT------GCAGACCAGAGTGTTGAAGAAGGCTGTCCTGCATGTTCGGCATCTCAGTTCCCATGTACTCGAGAG------------------------TGTGTTGGTGAGACAGACTGCCAGGATCGATCTGATGATGCAAACTGTGATGgtagataggtgctgcctggcctgaatagacctccaggtcacatgggcagc Alignment from Spaln_nt2Genome AGCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACCACTGGTGAGATCGACTGCATCCCCGGAGCCTGGCGCTGTGACGGCTTCCCTGAGTGTGCTGACCAGAGTGATGAAGAAGGCTGCCCAGTGTGCTCCGCCTCTCAGTTCCCCTGCGCTCGAGGCCAGTGTGTGGACCTGCGGTTACGCTGCGACGGTGAGGCCGACTGCCAGGATCGCTCTGATGAAGCTAACTGCGATG gcatatgaatgtgtcacacactgtctgatattccctctgattttttgtagAGCCTCCAACCTGCACCCCTGATCAGTTTGCTTGTACAACTGGACAAAT------CATCCCTGGAGCTTGGCACAGTGATAGCTTCCC------TGCAGACCAGAGTGTTGAAGAAGGCTGTCCTGCATGTTCGGCATCTCAGTTCCCATGTACTCGAG---AGTGTGT---------------------TGGTGAGACAGACTGCCAGGATCGATCTGATGATGCAAACTGTGATGgtagataggtgctgcctggcctgaatagacctccaggtcacatgggcagc Alignment from Pairagon AGCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACCACTGGTGAGATCGACTGCATCCCCGGAGCCTGGCGCTGTGACGGCTTCCCTGAGTGTGCTGACCAGAGTGATGAAGAAGGCTGCCCAGTGTGCTCCGCCTCTCAGTTCCCCTGCGCTCGAGGCCAGTGTGTGGACCTGCGGTTACGCTGCGACGGTGAGGCCGACTGCCAGGATCGCTCTGATGAAGCTAACTGCGATG gcatatgaatgtgtcacacactgtctgatattccctctgattttttgtagAGCCTCCAACCTGCACCCCTGATCAGTTTGCTTGTACAACTGGACAAAT------CATCCCTGGAGCTTGGCACAGTGATAGCTTCCC------TGCAGACCAGAGTGTTGAAGAAGGCTGTCCTGCATGTTCGGCATCTCAGTTCCCATGTACTCGAG---AGTGTGT---------------------TGGTGAGACAGACTGCCAGGATCGATCTGATGATGCAAACTGTGATGgtagataggtgctgcctggcctgaatagacctccaggtcacatgggcagc Alignment from Exonerate_protein2genome AGCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACCACTGGTGAGATCGACTGCATCCCCGGAGCCTGGCGCTGTGACGGCTTCCCTGAGTGTGCTGACCAGAGTGATGAAGAAGGCTGCCCAGTGTGCTCCGCCTCTCAGTTCCCCTGCGCTCGAGGCCAGTGTGTGGACCTGCGGTTACGC---TGCGACGGTGAGGCCGACTGCCAGGATCG gcatatgaatgtgtcacacactgtctgatattccctctgattttttgtagAGCCTCCAACCTGCACCCCTGATCAGTTTGCTTGTACAACTGGACAAATC------ATCCCTGGAGCTTGGCACAGTGATAGCTTCCCT------GCAGACCAGAGTGTTGAAGAAGGCTGTCCTGCATGTTCGGCATCTCAGTTCCCATGTACTCGAGAGTGTGTTGGTGAGACAGACTGCCAGGATCGATCTGATGATGCAAACTGTGATGGTAGataggtgctgcctggcctgaatagacctccaggtcacatgggcagc Alignment from Exonerate_coding2genome AGCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACCACTGGTGAGATCGACTGCATCCCCGGAGCCTGGCGCTGTGACGGCTTCCCTGAGTGTGCTGACCAGAGTGATGAAGAAGGCTGCCCAGTGTGCTCCGCCTCTCAGTTCCCCTGCGCTCGAGGCCAGTGTGTGGACCTGCGGTTACGC---TGCGACGGTGAGGCCGACTGCCAGGATCG gcatatgaatgtgtcacacactgtctgatattccctctgattttttgtagAGCCTCCAACCTGCACCCCTGATCAGTTTGCTTGTACAACTGGACAAATC------ATCCCTGGAGCTTGGCACAGTGATAGCTTCCCT------GCAGACCAGAGTGTTGAAGAAGGCTGTCCTGCATGTTCGGCATCTCAGTTCCCATGTACTCGAGAGTGTGTTGGTGAGACAGACTGCCAGGATCGATCTGATGATGCAAACTGTGATGGTAGataggtgctgcctggcctgaatagacctccaggtcacatgggcagc Alignment from GeneWise AGCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACCACTGGTGAGATCGACTGCATCCCCGGAGCCTGGCGCTGTGACGGCTTCCCTGAGTGTGCTGACCAGAGTGATGAAGAAGGCTGCCCAGTGTGCTCCGCCTCTCAGTTCCCCTGCGCTCGAGGCCAGTGTGTGGACCTGCGGTTACGCTGCGACGGTGAGGCCGACTGCCAGGATCGCTCTGATGAAGCTAACTGCGATG gcatatgaatgtgtcacacactgtctgatattccctctgattttttgtagAGCCTCCAACCTGCACCCCTGATCAGTTTGCTTGTACAACTGGACAAATC------ATCCCTGGAGCTTGGCACAGTGATAGCTTCCCT------GCAGACCAGAGTGTTGAAGAAGGCTGTCCTGCATGTTCGGCATCTCAGTTCCCATGTACTCGA------------------------GAGTGTGTTGGTGAGACAGACTGCCAGGATCGATCTGATGATGCAAACTGTGATGgtagataggtgctgcctggcctgaatagacctccaggtcacatgggcagc #### Lrp5_ID112_12 --> 2 - 1 Original Alignment gtCAGGAGCGCATGGTGATAGCTGACGATCTGCCCTACCCGTTTGGCCTGACTCAATATAGCGATTACATCTACTGGACTGACTGGAACCTGCATAGCATTGAACGGGCGGACAAGACCAGTGGGCGGAACCGCACCCTCATCCAGGGTCACCTGGACTTCGTCATGGACATCCTGGTGTTCCACTCCTCCCGTCAGGATGGCCTCAACGACTGCGTGCACAGCAATGGCCAGTGTGGGCAGCTGTGCCTCGCCATCCCCGGAGGCCACCGCTGTGGCTGTGCTTCACACTACACGCTGGACCCCAGCAGCCGCAACTGCAGCc ttctggggctcaaaagttcttattgttctcctcaactcttgtccccctagatCAAGAGCACATGGTGATAGTCGATGATCTGCCCTACCCATTCAGCTTGACCCAGTATAGTGATTACATCTATTGGACTGATTGGAACCTACATAGCATCGAATGGGCAGACAAAACCAGTGGGCGGAATCACAGCCTAATTCAGGGTCATTTGGACCTGGTCATGGACATCCTGGTGTGTTACTCTTCCCGTCAGGATGGACTTAATGCCTGTGTGCATAGCAATGGCCAGTGTGGCCAATTATGCCTCACTATACCCGGAAGTCACCGCTGTGGCTGTACATCATACTACACACTGGACCCCAGCAGCCGTAACTGCAGCtgtgactgaaagtctaccagttagctatggaatgccccaccatccaggcta Alignment from CESAR gtCAGGAGCGCATGGTGATAGCTGACGATCTGCCCTACCCGTTTGGCCTGACTCAATATAGCGATTACATCTACTGGACTGACTGGAACCTGCATAGCATTGAACGGGCGGACAAGACCAGTGGGCGGAACCGCACCCTCATCCAGGGTCACCTGGACTTCGTCATGGACATCCTGGTGTTCCACTCCTCCCGTCAGGATGGCCTCAACGACTGCGTGCACAGCAATGGCCAGTGTGGGCAGCTGTGCCTCGCCATCCCCGGAGGCCACCGCTGTGGCTGTGCTTCACACTACACGCTGGACCCCAGCAGCCGCAACTGCAGCc ttctggggctcaaaagttcttattgttctcctcaactcttgtccccctagatCAAGAGCACATGGTGATAGTCGATGATCTGCCCTACCCATTCAGCTTGACCCAGTATAGTGATTACATCTATTGGACTGATTGGAACCTACATAGCATCGAATGGGCAGACAAAACCAGTGGGCGGAATCACAGCCTAATTCAGGGTCATTTGGACCTGGTCATGGACATCCTGGTGTGTTACTCTTCCCGTCAGGATGGACTTAATGCCTGTGTGCATAGCAATGGCCAGTGTGGCCAATTATGCCTCACTATACCCGGAAGTCACCGCTGTGGCTGTACATCATACTACACACTGGACCCCAGCAGCCGTAACTGCAGCtgtgactgaaagtctaccagttagctatggaatgccccaccatccaggcta Alignment from Spaln_aa2Genome GTCAGGAGCGCATGGTGATAGCTGACGATCTGCCCTACCCGTTTGGCCTGACTCAATATAGCGATTACATCTACTGGACTGACTGGAACCTGCATAGCATTGAACGGGCGGACAAGACCAGTGGGCGGAACCGCACCCTCATCCAGGGTCACCTGGACTTCGTCATGGACATCCTGGTGTTCCACTCCTCCCGTCAGGATGGCCTCAACGACTGCGTGCACAGCAATGGCCAGTGTGGGCAGCTGTGCCTCGCCATCCCCGGAGGCCACCGCTGTGGCTGTGCTTCACACTACACGCTGGACCCCAGCAGCCGCAACTGCAGCC ttctggggctcaaaagttcttattgttctcctcaactcttgtccccctagATCAAGAGCACATGGTGATAGTCGATGATCTGCCCTACCCATTCAGCTTGACCCAGTATAGTGATTACATCTATTGGACTGATTGGAACCTACATAGCATCGAATGGGCAGACAAAACCAGTGGGCGGAATCACAGCCTAATTCAGGGTCATTTGGACCTGGTCATGGACATCCTGGTGTGTTACTCTTCCCGTCAGGATGGACTTAATGCCTGTGTGCATAGCAATGGCCAGTGTGGCCAATTATGCCTCACTATACCCGGAAGTCACCGCTGTGGCTGTACATCATACTACACACTGGACCCCAGCAGCCGTAACTGCAGCTgtgactgaaagtctaccagttagctatggaatgccccaccatccaggcta Alignment from Spaln_nt2Genome GTCAGGAGCGCATGGTGATAGCTGACGATCTGCCCTACCCGTTTGGCCTGACTCAATATAGCGATTACATCTACTGGACTGACTGGAACCTGCATAGCATTGAACGGGCGGACAAGACCAGTGGGCGGAACCGCACCCTCATCCAGGGTCACCTGGACTTCGTCATGGACATCCTGGTGTTCCACTCCTCCCGTCAGGATGGCCTCAACGACTGCGTGCACAGCAATGGCCAGTGTGGGCAGCTGTGCCTCGCCATCCCCGGAGGCCACCGCTGTGGCTGTGCTTCACACTACACGCTGGACCCCAGCAGCCGCAACTGCAGCC ttctggggctcaaaagttcttattgttctcctcaactcttgtccccctagATCAAGAGCACATGGTGATAGTCGATGATCTGCCCTACCCATTCAGCTTGACCCAGTATAGTGATTACATCTATTGGACTGATTGGAACCTACATAGCATCGAATGGGCAGACAAAACCAGTGGGCGGAATCACAGCCTAATTCAGGGTCATTTGGACCTGGTCATGGACATCCTGGTGTGTTACTCTTCCCGTCAGGATGGACTTAATGCCTGTGTGCATAGCAATGGCCAGTGTGGCCAATTATGCCTCACTATACCCGGAAGTCACCGCTGTGGCTGTACATCATACTACACACTGGACCCCAGCAGCCGTAACTGCAGCTgtgactgaaagtctaccagttagctatggaatgccccaccatccaggcta Alignment from Pairagon GTCAGGAGCGCATGGTGATAGCTGACGATCTGCCCTACCCGTTTGGCCTGACTCAATATAGCGATTACATCTACTGGACTGACTGGAACCTGCATAGCATTGAACGGGCGGACAAGACCAGTGGGCGGAACCGCACCCTCATCCAGGGTCACCTGGACTTCGTCATGGACATCCTGGTGTTCCACTCCTCCCGTCAGGATGGCCTCAACGACTGCGTGCACAGCAATGGCCAGTGTGGGCAGCTGTGCCTCGCCATCCCCGGAGGCCACCGCTGTGGCTGTGCTTCACACTACACGCTGGACCCCAGCAGCCGCAACTGCAGCC ttctggggctcaaaagttcttattgttctcctcaactcttgtccccctagATCAAGAGCACATGGTGATAGTCGATGATCTGCCCTACCCATTCAGCTTGACCCAGTATAGTGATTACATCTATTGGACTGATTGGAACCTACATAGCATCGAATGGGCAGACAAAACCAGTGGGCGGAATCACAGCCTAATTCAGGGTCATTTGGACCTGGTCATGGACATCCTGGTGTGTTACTCTTCCCGTCAGGATGGACTTAATGCCTGTGTGCATAGCAATGGCCAGTGTGGCCAATTATGCCTCACTATACCCGGAAGTCACCGCTGTGGCTGTACATCATACTACACACTGGACCCCAGCAGCCGTAACTGCAGCTgtgactgaaagtctaccagttagctatggaatgccccaccatccaggcta Alignment from Exonerate_protein2genome GTCAGGAGCGCATGGTGATAGCTGACGATCTGCCCTACCCGTTTGGCCTGACTCAATATAGCGATTACATCTACTGGACTGACTGGAACCTGCATAGCATTGAACGGGCGGACAAGACCAGTGGGCGGAACCGCACCCTCATCCAGGGTCACCTGGACTTCGTCATGGACATCCTGGTGTTCCACTCCTCCCGTCAGGATGGCCTCAACGACTGCGTGCACAGCAATGGCCAGTGTGGGCAGCTGTGCCTCGCCATCCCCGGAGGCCACCGCTGTGGCTGTGCTTCACACTACACGCTGGACCCCAGCAGCCGCAACTGCAGCC ttctggggctcaaaagttcttattgttctcctcaactcttgtccccctagATCAAGAGCACATGGTGATAGTCGATGATCTGCCCTACCCATTCAGCTTGACCCAGTATAGTGATTACATCTATTGGACTGATTGGAACCTACATAGCATCGAATGGGCAGACAAAACCAGTGGGCGGAATCACAGCCTAATTCAGGGTCATTTGGACCTGGTCATGGACATCCTGGTGTGTTACTCTTCCCGTCAGGATGGACTTAATGCCTGTGTGCATAGCAATGGCCAGTGTGGCCAATTATGCCTCACTATACCCGGAAGTCACCGCTGTGGCTGTACATCATACTACACACTGGACCCCAGCAGCCGTAACTGCAGCTgtgactgaaagtctaccagttagctatggaatgccccaccatccaggcta Alignment from Exonerate_coding2genome GTCAGGAGCGCATGGTGATAGCTGACGATCTGCCCTACCCGTTTGGCCTGACTCAATATAGCGATTACATCTACTGGACTGACTGGAACCTGCATAGCATTGAACGGGCGGACAAGACCAGTGGGCGGAACCGCACCCTCATCCAGGGTCACCTGGACTTCGTCATGGACATCCTGGTGTTCCACTCCTCCCGTCAGGATGGCCTCAACGACTGCGTGCACAGCAATGGCCAGTGTGGGCAGCTGTGCCTCGCCATCCCCGGAGGCCACCGCTGTGGCTGTGCTTCACACTACACGCTGGACCCCAGCAGCCGCAACTGCAGCC ttctggggctcaaaagttcttattgttctcctcaactcttgtccccctagATCAAGAGCACATGGTGATAGTCGATGATCTGCCCTACCCATTCAGCTTGACCCAGTATAGTGATTACATCTATTGGACTGATTGGAACCTACATAGCATCGAATGGGCAGACAAAACCAGTGGGCGGAATCACAGCCTAATTCAGGGTCATTTGGACCTGGTCATGGACATCCTGGTGTGTTACTCTTCCCGTCAGGATGGACTTAATGCCTGTGTGCATAGCAATGGCCAGTGTGGCCAATTATGCCTCACTATACCCGGAAGTCACCGCTGTGGCTGTACATCATACTACACACTGGACCCCAGCAGCCGTAACTGCAGCTgtgactgaaagtctaccagttagctatggaatgccccaccatccaggcta Alignment from GeneWise GTCAGGAGCGCATGGTGATAGCTGACGATCTGCCCTACCCGTTTGGCCTGACTCAATATAGCGATTACATCTACTGGACTGACTGGAACCTGCATAGCATTGAACGGGCGGACAAGACCAGTGGGCGGAACCGCACCCTCATCCAGGGTCACCTGGACTTCGTCATGGACATCCTGGTGTTCCACTCCTCCCGTCAGGATGGCCTCAACGACTGCGTGCACAGCAATGGCCAGTGTGGGCAGCTGTGCCTCGCCATCCCCGGAGGCCACCGCTGTGGCTGTGCTTCACACTACACGCTGGACCCCAGCAGCCGCAACTGCAGCC ttctggggctcaaaagttcttattgttctcctcaactcttgtccccctagATCAAGAGCACATGGTGATAGTCGATGATCTGCCCTACCCATTCAGCTTGACCCAGTATAGTGATTACATCTATTGGACTGATTGGAACCTACATAGCATCGAATGGGCAGACAAAACCAGTGGGCGGAATCACAGCCTAATTCAGGGTCATTTGGACCTGGTCATGGACATCCTGGTGTGTTACTCTTCCCGTCAGGATGGACTTAATGCCTGTGTGCATAGCAATGGCCAGTGTGGCCAATTATGCCTCACTATACCCGGAAGTCACCGCTGTGGCTGTACATCATACTACACACTGGACCCCAGCAGCCGTAACTGCAGCTgtgactgaaagtctaccagttagctatggaatgccccaccatccaggcta #### Lrp5_ID114_10 --> 0 - 2 Original Alignment ACGATC------------AGCCGAGCCTTC---ATGAATGGGAGCTCAGTGGAGCACGTGATTGAGTTTGGCCTCGACTACCCTGAAGGAATGGCTGTGGACTGGATGGGCAAGAACCTCTATTGGGCGGACACAGGGACC---------------------------------------------------AACAGGATTGAGGTGGCCCGGCTGGATGGGCAGTTCCGGCAGGTGCTTGTGTGGAGAGACCTTGACAACCCCAGGTCTCTGGCTCTGGATCCT------ACTAAAgg aatgctcattgacaaatgctcaaggagctgactgcctattttccacacagACAATTGCCCACGCCTTCAGCCATGCCTTTGTTGCTAATGGGAGCTTGGTGGAACATGTGAGTGAGTTTGGTCTTGATTACCCA---GGGATGTCA---GATTGGATGGGCAAGAACCTGTATTGGGCAGACACAGAGACTGTGGATGGGCAAGGAGAACATCTAGCAGGAGGTTGGAGTTACTCATATGTTAACAGGATCGAGGTAGCCCGACCAGATGGGCAG---------------------------------------CGATCACTAGCACTTGATCCAACTGAGGCAAAGgggtaagcgctctttgcttggtttatgatacctgcctctgctggttctatag Alignment from CESAR ACGATC------------AGCCGAGCCTTCATG---AATGGGAGCTCAGTGGAGCACGTGATTGAGTTTGGCCTCGACTACCCTGAAGGAATGGCTGTGGACTGGATGGGCAAGAACCTCTATTGGGCGGACACAGGGACC---------------------------------------------------AACAGGATTGAGGTGGCCCGGCTGGATGGGCAGTTCCGGCAGGTGCTTGTGTGGAGAGACCTTGACAACCCCAGGTCTCTGGCTCTGGATCCTACT------AAAgg aatgctcattgacaaatgctcaaggagctgactgcctattttccacacagACAATTGCCCACGCCTTCAGCCATGCCTTTGTTGCTAATGGGAGCTTGGTGGAACATGTGAGTGAGTTTGGTCTTGATTACCCA---GGGATGTCA---GATTGGATGGGCAAGAACCTGTATTGGGCAGACACAGAGACTGTGGATGGGCAAGGAGAACATCTAGCAGGAGGTTGGAGTTACTCATATGTTAACAGGATCGAGGTAGCCCGACCAGATGGGCAG---------------------------------------CGATCACTAGCACTTGATCCAACTGAGGCAAAGgggtaagcgctctttgcttggtttatgatacctgcctctgctggttctatag Alignment from Spaln_aa2Genome ACGATCAGCCGAGCCTTC---------------ATGAATGGGAGCTCAGTGGAGCACGTGATTGAGTTTGGCCTCGACTACCCTGAAGGAATGGCTGTGGACTGGATGGGCAAGAACCTCTATTGGGCGGACACAGGGACCAACAGGATTGAGGTGGCCCGGCTGGATGGGCAGTTCCGGCAGGTGCTTGTGTGGAGA------------GACCTTGACAACCCCAGGTCTCTGGCTCTGGATCCTACT------AAAGG aatgctcattgacaaatgctcaaggagctgactgcctattttccacacagACAATTGCCCACGCCTTCAGCCATGCCTTTGTTGCTAATGGGAGCTTGGTGGAACATGTGAGTGAGTTTGGTCTTGATTACCCA---GGGATGTCA---GATTGGATGGGCAAGAACCTGTATTGGGCAGACACAGAGACTGTGGATGGGCAAGGAGAACATCTAGCAGGAGGTTGGAGTTACTCATATGTTAACAGGATCGAGGTAGCCCGACCAGATGGGCAGCGATCACTAGCACTTGATCCAACTGAGGCAAAGGGgtaagcgctctttgcttggtttatgatacctgcctctgctggttctatag Alignment from Spaln_nt2Genome CCGAGCCTTCATG---AATGGGAGCTCAGTGGAGCACGTGATTGAGTTTGGCCTCGACTACCCTGAAGGAATGGCTGTGGACTGGATGGGCAAGAACCTCTATTGGGCGGACACAGGGACCA---ACAG GATTGAGGTGGCCCGGCTGGATGGGCAGTTCCGGCAGGTGCTTGTGTGGAGAGAC aatgctcattgacaaatgctcaaggagctgactgcctattttccacacagacaattgcccacgccttcagCCATGCCTTTGTTGCTAATGGGAGCTTGGTGGAACATGTGAGTGAGTTTGGTCTTGATTACCC---AGGGATGTC---AGATTGGATGGGCAAGAACCTGTATTGGGCAGACACAGAGACTGTGGATGGgcaaggagaacatctagcaggaggttggagttactcatatgttaacagGATCGAGGTAGCCCGACCAGATGGGCAGCGATCACTAGCACTTGATCCAACTGAGgcaaaggggtaagcgctctttgcttggtttatgatacctgcctctgctggttctatag Alignment from Pairagon ACGATCAGCCGAGCCTTCATG-----------AATGGGAGCTCAGTGGAGCACGTGATTGAGTTTGGCCTCGACTACCCTGAAGGAATGGCTGTGGACTGGATGGGCAAGAACCTCTATTGGGCGGACACAGGGAC---------------------------------------------------CAACAGGATTGAGGTGGCCCGGCTGGATGGGCAGTTCCGGCAGGTGCTTGTGTGGAGAGACCTTGACAACCCCAGGTCTCTGGCTCTGGATCCTACT------AAAGG aatgctcattgacaaatgctcaaggagctgactgcctattttccacacagacaattgcccacgccttcag----------------CCATGCCTTTGTTGCTAATGGGAGCTTGGTGGAACATGTGAGTGAGTTTGGTCTTGATTACCC---AGGGATGTC---AGATTGGATGGGCAAGAACCTGTATTGGGCAGACACAGAGACTGTGGATGGGCAAGGAGAACATCTAGCAGGAGGTTGGAGTTACTCATATGTTAACAGGATCGAGGTAGCCCGACCAGATGGGCAGC---------------------------------------GATCACTAGCACTTGATCCAACTGAGGCAAAGGGgtaagcgctctttgcttggtttatgatacctgcctctgctggttctatag Alignment from Exonerate_protein2genome CAGCCGAGCCTTCATGAATGGGAGCTCAGTGGAGCACGTGATTGAGTTTGGCCTCGACTACCCTGAAGGAATGGCTGTGGACTGGATGGGCAAGAACCTCTATTGGGCGGACACAGGGACCAACAGGATTGAGGTGGCCCGGCTGGATGGGCAGTTCCGGCAGGTGCTTGTGTGGAGA---GACCTTGACAACCCC---------AGGTCTCTGGCTCTGGATCCTACT------AAAGG aatgctcattgacaaatgctcaaggagctgactgcctattttccacacagacaattgcccacgccttcagCCATGCCTTTGTTGCTAATGGGAGCTTGGTGGAACATGTGAGTGAGTTTGGTCTTGATTACCCA---GGGATGTCA---GATTGGATGGGCAAGAACCTGTATTGGGCAGACACAGAGACTGTGGATGGGCAAGGAGAACATCTAGCAGGAGGTTGGAGTTACTCATATGTTAACAGGATCGAGGTAGCCCGACCAGATGGGCAGCGATCACTAGCACTTGATCCAACTGAGGCAAAGGGgtaagcgctctttgcttggtttatgatacctgcctctgctggttctatag Alignment from Exonerate_coding2genome CAGCCGAGCCTTCATGAATGGGAGCTCAGTGGAGCACGTGATTGAGTTTGGCCTCGACTACCCTGAAGGAATGGCTGTGGACTGGATGGGCAAGAACCTCTATTGGGCGGACACAGGGACCAACAGGATTGAGGTGGCCCGGCTGGATGGGCAGTTCCGGCAGGTGCTTGTGTGGAGA---GACCTTGACAACCCC---------AGGTCTCTGGCTCTGGATCCTACT------AAAGG aatgctcattgacaaatgctcaaggagctgactgcctattttccacacagacaattgcccacgccttcagCCATGCCTTTGTTGCTAATGGGAGCTTGGTGGAACATGTGAGTGAGTTTGGTCTTGATTACCCA---GGGATGTCA---GATTGGATGGGCAAGAACCTGTATTGGGCAGACACAGAGACTGTGGATGGGCAAGGAGAACATCTAGCAGGAGGTTGGAGTTACTCATATGTTAACAGGATCGAGGTAGCCCGACCAGATGGGCAGCGATCACTAGCACTTGATCCAACTGAGGCAAAGGGgtaagcgctctttgcttggtttatgatacctgcctctgctggttctatag Alignment from GeneWise ACGATCAGCCGAGCCTTC---------------ATGAATGGGAGCTCAGTGGAGCACGTGATTGAGTTTGGCCTCGACTACCCTGAAGGAATGGCTGTGGACTGGATGGGCAAGAACCTCTATTGGGCGGACACAGGGACCAACAGGATTGAGGTGGCCCGGCTGGATGGGCAGTTCCGGCAGGTGCTTGTGTGGAGA------------GACCTTGACAACCCCAGGTCTCTGGCTCTGGATCCTACT------AAAGG aatgctcattgacaaatgctcaaggagctgactgcctattttccacacagACAATTGCCCACGCCTTCAGCCATGCCTTTGTTGCTAATGGGAGCTTGGTGGAACATGTGAGTGAGTTTGGTCTTGATTACCCA---GGGATGTCA---GATTGGATGGGCAAGAACCTGTATTGGGCAGACACAGAGACTGTGGATGGGCAAGGAGAACATCTAGCAGGAGGTTGGAGTTACTCATATGTTAACAGGATCGAGGTAGCCCGACCAGATGGGCAGCGATCACTAGCACTTGATCCAACTGAGGCAAAGGGgtaagcgctctttgcttggtttatgatacctgcctctgctggttctatag #### Lrp5_ID115_9 --> 2 - 0 Original Alignment gaACCAACCCATGTGCGGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCCACCAAGTGTGGCTGCCCCATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCCTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATCTCCCTGGAGACTAACAACAACGATGTGGCTATCCCACTCACGGGTGTCAAAGAGGCCTCTGCACTGGACTTTGATGTGTCCAACAATCACATCTACTGGACTGATGTCAGCCTCAAG tgcttaaggaaattgtcacttcatctttcatttgatttcataatcactaggaACCAACCCATGTGCTGATGGGAATGGAGGGTGTAGTCATCTGTGCTTCTTCACCCCACATGCAACTAAGTGTGGCTGTCCTATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCAAAATACCTCAGGCTTTCCTGGTATTCTCCAGCAGAGCCACCATCCACAGGGTTTCCCTTGAAGCTAACAATATTGATGTCGCAATTCCACTTACTGGCGTCAAGGAGGCCTGTGCGCTAGATTTTGAAGTATCCAACAATCACATCTATTGGACTGATGTTAGTTTCAAGgtgagctggtcataagtcttactgccttatatcaagccctccctgtgccg Alignment from CESAR gaACCAACCCATGTGCGGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCCACCAAGTGTGGCTGCCCCATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCCTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATCTCCCTGGAGACTAACAACAACGATGTGGCTATCCCACTCACGGGTGTCAAAGAGGCCTCTGCACTGGACTTTGATGTGTCCAACAATCACATCTACTGGACTGATGTCAGCCTCAAG tgcttaaggaaattgtcacttcatctttcatttgatttcataatcactaggaACCAACCCATGTGCTGATGGGAATGGAGGGTGTAGTCATCTGTGCTTCTTCACCCCACATGCAACTAAGTGTGGCTGTCCTATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCAAAATACCTCAGGCTTTCCTGGTATTCTCCAGCAGAGCCACCATCCACAGGGTTTCCCTTGAAGCTAACAATATTGATGTCGCAATTCCACTTACTGGCGTCAAGGAGGCCTGTGCGCTAGATTTTGAAGTATCCAACAATCACATCTATTGGACTGATGTTAGTTTCAAGgtgagctggtcataagtcttactgccttatatcaagccctccctgtgccg Alignment from Spaln_aa2Genome GAACCAACCCATGTGCGGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCCACCAAGTGTGGCTGCCCCATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCCTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATCTCCCTGGAGACTAACAACAACGATGTGGCTATCCCACTCACGGGTGTCAAAGAGGCCTCTGCACTGGACTTTGATGTGTCCAACAATCACATCTACTGGACTGATGTCAGCCTCAAG tgcttaaggaaattgtcacttcatctttcatttgatttcataatcactagGAACCAACCCATGTGCTGATGGGAATGGAGGGTGTAGTCATCTGTGCTTCTTCACCCCACATGCAACTAAGTGTGGCTGTCCTATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCAAAATACCTCAGGCTTTCCTGGTATTCTCCAGCAGAGCCACCATCCACAGGGTTTCCCTTGAAGCTAACAATATTGATGTCGCAATTCCACTTACTGGCGTCAAGGAGGCCTGTGCGCTAGATTTTGAAGTATCCAACAATCACATCTATTGGACTGATGTTAGTTTCAAGgtgagctggtcataagtcttactgccttatatcaagccctccctgtgccg Alignment from Spaln_nt2Genome GAACCAACCCATGTGCGGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCCACCAAGTGTGGCTGCCCCATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCCTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATCTCCCTGGAGACTAACAACAACGATGTGGCTATCCCACTCACGGGTGTCAAAGAGGCCTCTGCACTGGACTTTGATGTGTCCAACAATCACATCTACTGGACTGATGTCAGCCTCAAG tgcttaaggaaattgtcacttcatctttcatttgatttcataatcactagGAACCAACCCATGTGCTGATGGGAATGGAGGGTGTAGTCATCTGTGCTTCTTCACCCCACATGCAACTAAGTGTGGCTGTCCTATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCAAAATACCTCAGGCTTTCCTGGTATTCTCCAGCAGAGCCACCATCCACAGGGTTTCCCTTGAAGCTAACAATATTGATGTCGCAATTCCACTTACTGGCGTCAAGGAGGCCTGTGCGCTAGATTTTGAAGTATCCAACAATCACATCTATTGGACTGATGTTAGTTTCAAGgtgagctggtcataagtcttactgccttatatcaagccctccctgtgccg Alignment from Pairagon GAACCAACCCATGTGCGGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCCACCAAGTGTGGCTGCCCCATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCCTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATCTCCCTGGAGACTAACAACAACGATGTGGCTATCCCACTCACGGGTGTCAAAGAGGCCTCTGCACTGGACTTTGATGTGTCCAACAATCACATCTACTGGACTGATGTCAGCCTCAAG tgcttaaggaaattgtcacttcatctttcatttgatttcataatcactagGAACCAACCCATGTGCTGATGGGAATGGAGGGTGTAGTCATCTGTGCTTCTTCACCCCACATGCAACTAAGTGTGGCTGTCCTATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCAAAATACCTCAGGCTTTCCTGGTATTCTCCAGCAGAGCCACCATCCACAGGGTTTCCCTTGAAGCTAACAATATTGATGTCGCAATTCCACTTACTGGCGTCAAGGAGGCCTGTGCGCTAGATTTTGAAGTATCCAACAATCACATCTATTGGACTGATGTTAGTTTCAAGgtgagctggtcataagtcttactgccttatatcaagccctccctgtgccg Alignment from Exonerate_protein2genome GAACCAACCCATGTGCGGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCCACCAAGTGTGGCTGCCCCATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCCTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATCTCCCTGGAGACTAACAACAACGATGTGGCTATCCCACTCACGGGTGTCAAAGAGGCCTCTGCACTGGACTTTGATGTGTCCAACAATCACATCTACTGGACTGATGTCAGCCTCAAG tgcttaaggaaattgtcacttcatctttcatttgatttcataatcactagGAACCAACCCATGTGCTGATGGGAATGGAGGGTGTAGTCATCTGTGCTTCTTCACCCCACATGCAACTAAGTGTGGCTGTCCTATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCAAAATACCTCAGGCTTTCCTGGTATTCTCCAGCAGAGCCACCATCCACAGGGTTTCCCTTGAAGCTAACAATATTGATGTCGCAATTCCACTTACTGGCGTCAAGGAGGCCTGTGCGCTAGATTTTGAAGTATCCAACAATCACATCTATTGGACTGATGTTAGTTTCAAGgtgagctggtcataagtcttactgccttatatcaagccctccctgtgccg Alignment from Exonerate_coding2genome GAACCAACCCATGTGCGGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCCACCAAGTGTGGCTGCCCCATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCCTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATCTCCCTGGAGACTAACAACAACGATGTGGCTATCCCACTCACGGGTGTCAAAGAGGCCTCTGCACTGGACTTTGATGTGTCCAACAATCACATCTACTGGACTGATGTCAGCCTCAAG tgcttaaggaaattgtcacttcatctttcatttgatttcataatcactagGAACCAACCCATGTGCTGATGGGAATGGAGGGTGTAGTCATCTGTGCTTCTTCACCCCACATGCAACTAAGTGTGGCTGTCCTATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCAAAATACCTCAGGCTTTCCTGGTATTCTCCAGCAGAGCCACCATCCACAGGGTTTCCCTTGAAGCTAACAATATTGATGTCGCAATTCCACTTACTGGCGTCAAGGAGGCCTGTGCGCTAGATTTTGAAGTATCCAACAATCACATCTATTGGACTGATGTTAGTTTCAAGgtgagctggtcataagtcttactgccttatatcaagccctccctgtgccg Alignment from GeneWise GAACCAACCCATGTGCGGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCCACCAAGTGTGGCTGCCCCATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCCTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATCTCCCTGGAGACTAACAACAACGATGTGGCTATCCCACTCACGGGTGTCAAAGAGGCCTCTGCACTGGACTTTGATGTGTCCAACAATCACATCTACTGGACTGATGTCAGCCTCAAG tgcttaaggaaattgtcacttcatctttcatttgatttcataatcactagGAACCAACCCATGTGCTGATGGGAATGGAGGGTGTAGTCATCTGTGCTTCTTCACCCCACATGCAACTAAGTGTGGCTGTCCTATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCAAAATACCTCAGGCTTTCCTGGTATTCTCCAGCAGAGCCACCATCCACAGGGTTTCCCTTGAAGCTAACAATATTGATGTCGCAATTCCACTTACTGGCGTCAAGGAGGCCTGTGCGCTAGATTTTGAAGTATCCAACAATCACATCTATTGGACTGATGTTAGTTTCAAGgtgagctggtcataagtcttactgccttatatcaagccctccctgtgccg #### Ltbp3_ID1250_2 --> 2 - 1 Original Alignment tgGTGTGCCCTCTACCCTGCATGAACGGTGGCCAGTGCTCTTCCCGAAACCAGTGCCTGTGTCCCCCGGATTTCACGGGGCGCTTCTGCCAGGTGCCTGCTGCAGGAACCGGAGCTGGCACCGGGAGTTCAGGCCCCGGCCTGGCCCGGACCGGGGCCATGTCCACAGGCCCGCTGCCGCCCCTTGCCCCAGAAGGAGAGTCTGTGGCTAGCAAACACGCCATTTACGCGGTGCAGGTGATCGCAGATCCTCCCGGGCCGGGGGAGGGTCCTCCTGCACAACATGCAGCCTTCTTGGTGCCCCTGGGGCCAGGACAAATCTCGGCAGAAg atcatctctctgtccttttaataaaatccaagttatttgtttcatttcagttGTGTGCCCTTTACCCTGCATGAATGGTGGTCAATGCTCTTCCCGAAACCAATCCCTGTGCCCTCCAGCCTTCACGGGTCGCTTTTGTCAAGTGCCTGCTGCTGGGACTGGAGCTAGCTCTGGGAGTTTAGGCCCTGGATTGGCCCGAACTGGAGCCATGTCCACAGGGCCATTCCCACCCCTTGCCCCAGAAGGGGAATCTGTAACTAGCAAACATGCCATTTATGCAGTACATGTAATTGCAGATCCACCCGGCCCAGGAGAGGGCCCACCAGCTCAGCATGCAGCCTTTTTGGTGCCCCTAGGGCGAGGGCAAATCTCAGCAGAAggtaagaaaggaagagcaagcaactacgtgaattatccaagcaaatataag Alignment from CESAR tgGTGTGCCCTCTACCCTGCATGAACGGTGGCCAGTGCTCTTCCCGAAACCAGTGCCTGTGTCCCCCGGATTTCACGGGGCGCTTCTGCCAGGTGCCTGCTGCAGGAACCGGAGCTGGCACCGGGAGTTCAGGCCCCGGCCTGGCCCGGACCGGGGCCATGTCCACAGGCCCGCTGCCGCCCCTTGCCCCAGAAGGAGAGTCTGTGGCTAGCAAACACGCCATTTACGCGGTGCAGGTGATCGCAGATCCTCCCGGGCCGGGGGAGGGTCCTCCTGCACAACATGCAGCCTTCTTGGTGCCCCTGGGGCCAGGACAAATCTCGGCAGAAg atcatctctctgtccttttaataaaatccaagttatttgtttcatttcagttGTGTGCCCTTTACCCTGCATGAATGGTGGTCAATGCTCTTCCCGAAACCAATCCCTGTGCCCTCCAGCCTTCACGGGTCGCTTTTGTCAAGTGCCTGCTGCTGGGACTGGAGCTAGCTCTGGGAGTTTAGGCCCTGGATTGGCCCGAACTGGAGCCATGTCCACAGGGCCATTCCCACCCCTTGCCCCAGAAGGGGAATCTGTAACTAGCAAACATGCCATTTATGCAGTACATGTAATTGCAGATCCACCCGGCCCAGGAGAGGGCCCACCAGCTCAGCATGCAGCCTTTTTGGTGCCCCTAGGGCGAGGGCAAATCTCAGCAGAAggtaagaaaggaagagcaagcaactacgtgaattatccaagcaaatataag Alignment from Spaln_aa2Genome TGGTGTGCCCTCTACCCTGCATGAACGGTGGCCAGTGCTCTTCCCGAAACCAGTGCCTGTGTCCCCCGGATTTCACGGGGCGCTTCTGCCAGGTGCCTGCTGCAGGAACCGGAGCTGGCACCGGGAGTTCAGGCCCCGGCCTGGCCCGGACCGGGGCCATGTCCACAGGCCCGCTGCCGCCCCTTGCCCCAGAAGGAGAGTCTGTGGCTAGCAAACACGCCATTTACGCGGTGCAGGTGATCGCAGATCCTCCCGGGCCGGGGGAGGGTCCTCCTGCACAACATGCAGCCTTCTTGGTGCCCCTGGGGCCAGGACAAATCTCGGCAGAAG atcatctctctgtccttttaataaaatccaagttatttgtttcatttcagTTGTGTGCCCTTTACCCTGCATGAATGGTGGTCAATGCTCTTCCCGAAACCAATCCCTGTGCCCTCCAGCCTTCACGGGTCGCTTTTGTCAAGTGCCTGCTGCTGGGACTGGAGCTAGCTCTGGGAGTTTAGGCCCTGGATTGGCCCGAACTGGAGCCATGTCCACAGGGCCATTCCCACCCCTTGCCCCAGAAGGGGAATCTGTAACTAGCAAACATGCCATTTATGCAGTACATGTAATTGCAGATCCACCCGGCCCAGGAGAGGGCCCACCAGCTCAGCATGCAGCCTTTTTGGTGCCCCTAGGGCGAGGGCAAATCTCAGCAGAAGgtaagaaaggaagagcaagcaactacgtgaattatccaagcaaatataag Alignment from Spaln_nt2Genome TGGTGTGCCCTCTACCCTGCATGAACGGTGGCCAGTGCTCTTCCCGAAACCAGTGCCTGTGTCCCCCGGATTTCACGGGGCGCTTCTGCCAGGTGCCTGCTGCAGGAACCGGAGCTGGCACCGGGAGTTCAGGCCCCGGCCTGGCCCGGACCGGGGCCATGTCCACAGGCCCGCTGCCGCCCCTTGCCCCAGAAGGAGAGTCTGTGGCTAGCAAACACGCCATTTACGCGGTGCAGGTGATCGCAGATCCTCCCGGGCCGGGGGAGGGTCCTCCTGCACAACATGCAGCCTTCTTGGTGCCCCTGGGGCCAGGACAAATCTCGGCAGAAG atcatctctctgtccttttaataaaatccaagttatttgtttcatttcagTTGTGTGCCCTTTACCCTGCATGAATGGTGGTCAATGCTCTTCCCGAAACCAATCCCTGTGCCCTCCAGCCTTCACGGGTCGCTTTTGTCAAGTGCCTGCTGCTGGGACTGGAGCTAGCTCTGGGAGTTTAGGCCCTGGATTGGCCCGAACTGGAGCCATGTCCACAGGGCCATTCCCACCCCTTGCCCCAGAAGGGGAATCTGTAACTAGCAAACATGCCATTTATGCAGTACATGTAATTGCAGATCCACCCGGCCCAGGAGAGGGCCCACCAGCTCAGCATGCAGCCTTTTTGGTGCCCCTAGGGCGAGGGCAAATCTCAGCAGAAGgtaagaaaggaagagcaagcaactacgtgaattatccaagcaaatataag Alignment from Pairagon TGGTGTGCCCTCTACCCTGCATGAACGGTGGCCAGTGCTCTTCCCGAAACCAGTGCCTGTGTCCCCCGGATTTCACGGGGCGCTTCTGCCAGGTGCCTGCTGCAGGAACCGGAGCTGGCACCGGGAGTTCAGGCCCCGGCCTGGCCCGGACCGGGGCCATGTCCACAGGCCCGCTGCCGCCCCTTGCCCCAGAAGGAGAGTCTGTGGCTAGCAAACACGCCATTTACGCGGTGCAGGTGATCGCAGATCCTCCCGGGCCGGGGGAGGGTCCTCCTGCACAACATGCAGCCTTCTTGGTGCCCCTGGGGCCAGGACAAATCTCGGCAGAAG atcatctctctgtccttttaataaaatccaagttatttgtttcatttcagTTGTGTGCCCTTTACCCTGCATGAATGGTGGTCAATGCTCTTCCCGAAACCAATCCCTGTGCCCTCCAGCCTTCACGGGTCGCTTTTGTCAAGTGCCTGCTGCTGGGACTGGAGCTAGCTCTGGGAGTTTAGGCCCTGGATTGGCCCGAACTGGAGCCATGTCCACAGGGCCATTCCCACCCCTTGCCCCAGAAGGGGAATCTGTAACTAGCAAACATGCCATTTATGCAGTACATGTAATTGCAGATCCACCCGGCCCAGGAGAGGGCCCACCAGCTCAGCATGCAGCCTTTTTGGTGCCCCTAGGGCGAGGGCAAATCTCAGCAGAAGgtaagaaaggaagagcaagcaactacgtgaattatccaagcaaatataag Alignment from Exonerate_protein2genome TGGTGTGCCCTCTACCCTGCATGAACGGTGGCCAGTGCTCTTCCCGAAACCAGTGCCTGTGTCCCCCGGATTTCACGGGGCGCTTCTGCCAGGTGCCTGCTGCAGGAACCGGAGCTGGCACCGGGAGTTCAGGCCCCGGCCTGGCCCGGACCGGGGCCATGTCCACAGGCCCGCTGCCGCCCCTTGCCCCAGAAGGAGAGTCTGTGGCTAGCAAACACGCCATTTACGCGGTGCAGGTGATCGCAGATCCTCCCGGGCCGGGGGAGGGTCCTCCTGCACAACATGCAGCCTTCTTGGTGCCCCTGGGGCCAGGACAAATCTCGGCAGAAG atcatctctctgtccttttaataaaatccaagttatttgtttcatttcagTTGTGTGCCCTTTACCCTGCATGAATGGTGGTCAATGCTCTTCCCGAAACCAATCCCTGTGCCCTCCAGCCTTCACGGGTCGCTTTTGTCAAGTGCCTGCTGCTGGGACTGGAGCTAGCTCTGGGAGTTTAGGCCCTGGATTGGCCCGAACTGGAGCCATGTCCACAGGGCCATTCCCACCCCTTGCCCCAGAAGGGGAATCTGTAACTAGCAAACATGCCATTTATGCAGTACATGTAATTGCAGATCCACCCGGCCCAGGAGAGGGCCCACCAGCTCAGCATGCAGCCTTTTTGGTGCCCCTAGGGCGAGGGCAAATCTCAGCAGAAGgtaagaaaggaagagcaagcaactacgtgaattatccaagcaaatataag Alignment from Exonerate_coding2genome TGGTGTGCCCTCTACCCTGCATGAACGGTGGCCAGTGCTCTTCCCGAAACCAGTGCCTGTGTCCCCCGGATTTCACGGGGCGCTTCTGCCAGGTGCCTGCTGCAGGAACCGGAGCTGGCACCGGGAGTTCAGGCCCCGGCCTGGCCCGGACCGGGGCCATGTCCACAGGCCCGCTGCCGCCCCTTGCCCCAGAAGGAGAGTCTGTGGCTAGCAAACACGCCATTTACGCGGTGCAGGTGATCGCAGATCCTCCCGGGCCGGGGGAGGGTCCTCCTGCACAACATGCAGCCTTCTTGGTGCCCCTGGGGCCAGGACAAATCTCGGCAGAAG atcatctctctgtccttttaataaaatccaagttatttgtttcatttcagTTGTGTGCCCTTTACCCTGCATGAATGGTGGTCAATGCTCTTCCCGAAACCAATCCCTGTGCCCTCCAGCCTTCACGGGTCGCTTTTGTCAAGTGCCTGCTGCTGGGACTGGAGCTAGCTCTGGGAGTTTAGGCCCTGGATTGGCCCGAACTGGAGCCATGTCCACAGGGCCATTCCCACCCCTTGCCCCAGAAGGGGAATCTGTAACTAGCAAACATGCCATTTATGCAGTACATGTAATTGCAGATCCACCCGGCCCAGGAGAGGGCCCACCAGCTCAGCATGCAGCCTTTTTGGTGCCCCTAGGGCGAGGGCAAATCTCAGCAGAAGgtaagaaaggaagagcaagcaactacgtgaattatccaagcaaatataag Alignment from GeneWise TGGTGTGCCCTCTACCCTGCATGAACGGTGGCCAGTGCTCTTCCCGAAACCAGTGCCTGTGTCCCCCGGATTTCACGGGGCGCTTCTGCCAGGTGCCTGCTGCAGGAACCGGAGCTGGCACCGGGAGTTCAGGCCCCGGCCTGGCCCGGACCGGGGCCATGTCCACAGGCCCGCTGCCGCCCCTTGCCCCAGAAGGAGAGTCTGTGGCTAGCAAACACGCCATTTACGCGGTGCAGGTGATCGCAGATCCTCCCGGGCCGGGGGAGGGTCCTCCTGCACAACATGCAGCCTTCTTGGTGCCCCTGGGGCCAGGACAAATCTCGGCAGAAG atcatctctctgtccttttaataaaatccaagttatttgtttcatttcagTTGTGTGCCCTTTACCCTGCATGAATGGTGGTCAATGCTCTTCCCGAAACCAATCCCTGTGCCCTCCAGCCTTCACGGGTCGCTTTTGTCAAGTGCCTGCTGCTGGGACTGGAGCTAGCTCTGGGAGTTTAGGCCCTGGATTGGCCCGAACTGGAGCCATGTCCACAGGGCCATTCCCACCCCTTGCCCCAGAAGGGGAATCTGTAACTAGCAAACATGCCATTTATGCAGTACATGTAATTGCAGATCCACCCGGCCCAGGAGAGGGCCCACCAGCTCAGCATGCAGCCTTTTTGGTGCCCCTAGGGCGAGGGCAAATCTCAGCAGAAGgtaagaaaggaagagcaagcaactacgtgaattatccaagcaaatataag #### Ltbp3_ID1255_7 --> 2 - 1 Original Alignment ccGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAg agcacagtaagattgcctctccacactgtgacaccattctctccctacagccGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTTTAACTACACGTTTGACCCATCAGCTTTGCTGTTGTAGTGTTGGTAAGGCTTGGGGGGCCCGGTGCCAGCGTTGTCCAGCAGATGGCATGggtaagattgtagagtctcgggattgcattgttgtacccccccaccctgcc Alignment from CESAR ccGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAg agcacagtaagattgcctctccacactgtgacaccattctctccctacagccGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTTTAACTACACGTTTGACCCATCAGCTTTGCTGTTGTAGTGTTGGTAAGGCTTGGGGGGCCCGGTGCCAGCGTTGTCCAGCAGATGGCATGggtaagattgtagagtctcgggattgcattgttgtacctgcttccttcctc Alignment from Spaln_aa2Genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG agcacagtaagattgcctctccacactgtgacaccattctctccctacagCCGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTTTAACTACACGTTTGACCCATCAGCTTTGCTGTTGTAGTGTTGGTAAGGCTTGGGGGGCCCGGTGCCAGCGTTGTCCAGCAGATGGCATGGgtaagattgtagagtctcgggattgcattgttgtacccccccaccctgcc Alignment from Spaln_nt2Genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG agcacagtaagattgcctctccacactgtgacaccattctctccctacagCCGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTTTAACTACACGTTTGACCCATCAGCTTTGCTGTTGTAGTGTTGGTAAGGCTTGGGGGGCCCGGTGCCAGCGTTGTCCAGCAGATGGCATGGgtaagattgtagagtctcgggattgcattgttgtacccccccaccctgcc Alignment from Pairagon CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGT------------------------------------------------------ agcacagtaagattgcctctccacactgtgacaccattctctccctacagCCGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTTTAACTACACGTTTGACCCATCAGCTTTGCTGTTGTAGTGTTGGTAAGGCTTGGGGGGCCCGGTGCCAGCGTTGTCCAGCAGATGGCATGGGTAAGATTGTAGAGTCTCGGGATTGCATTGTTGTACCCCCCCACCCTGCC Alignment from Exonerate_protein2genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG agcacagtaagattgcctctccacactgtgacaccattctctccctacagCCGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTTTAACTACACGTTTGACCCATCAGCTTTGCTGTTGTAGTGTTGGTAAGGCTTGGGGGGCCCGGTGCCAGCGTTGTCCAGCAGATGGCATGGgtaagattgtagagtctcgggattgcattgttgtacccccccaccctgcc Alignment from Exonerate_coding2genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG agcacagtaagattgcctctccacactgtgacaccattctctccctacagCCGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTTTAACTACACGTTTGACCCATCAGCTTTGCTGTTGTAGTGTTGGTAAGGCTTGGGGGGCCCGGTGCCAGCGTTGTCCAGCAGATGGCATGGgtaagattgtagagtctcgggattgcattgttgtacccccccaccctgcc Alignment from GeneWise CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGT------------------------------------------------------ agcacagtaagattgcctctccacactgtgacaccattctctccctacagCCGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTTTAACTACACGTTTGACCCATCAGCTTTGCTGTTGTAGTGTTGGTAAGGCTTGGGGGGCCCGGTGCCAGCGTTGTCCAGCAGATGGCATGGGTAAGATTGTAGAGTCTCGGGATTGCATTGTTGTACCCCCCCACCCTGCC #### Ltbp3_ID1260_12 --> 2 - 1 Original Alignment agACCGATGAGTGCCGATTGAACCAGAATATCTGTGGCCATGGACAGTGTGTGCCTGGCCCCTCGGATTACTCCTGCCACTGCAACGCTGGCTACCGGTCACACCCGCAGCACCGCTACTGTGTTg gcaaaatacctcttgtcaaacatctatgtcctgccttctctgggccccagagACTGATGACTGCCGGCTAAATCAGAATATCTGTGGCCATGGACAGTGTGTGCCCGGTCCTTCTGATTACTCCTGCCATTGCAATGCTGGCTACCGGTCACACCCACAGCACCGTTACTGTGTTggtgggttatatgtgattaagggtatgggtgcttaagggtatagggctgga Alignment from CESAR agACCGATGAGTGCCGATTGAACCAGAATATCTGTGGCCATGGACAGTGTGTGCCTGGCCCCTCGGATTACTCCTGCCACTGCAACGCTGGCTACCGGTCACACCCGCAGCACCGCTACTGTGTTg gcaaaatacctcttgtcaaacatctatgtcctgccttctctgggccccagagACTGATGACTGCCGGCTAAATCAGAATATCTGTGGCCATGGACAGTGTGTGCCCGGTCCTTCTGATTACTCCTGCCATTGCAATGCTGGCTACCGGTCACACCCACAGCACCGTTACTGTGTTggtgggttatatgtgattaagggtatgggtgcttaagggtatagggctgga Alignment from Spaln_aa2Genome AGACCGATGAGTGCCGATTGAACCAGAATATCTGTGGCCATGGACAGTGTGTGCCTGGCCCCTCGGATTACTCCTGCCACTGCAACGCTGGCTACCGGTCACACCCGCAGCACCGCTACTGTGTTG gcaaaatacctcttgtcaaacatctatgtcctgccttctctgggccccagAGACTGATGACTGCCGGCTAAATCAGAATATCTGTGGCCATGGACAGTGTGTGCCCGGTCCTTCTGATTACTCCTGCCATTGCAATGCTGGCTACCGGTCACACCCACAGCACCGTTACTGTGTTGgtgggttatatgtgattaagggtatgggtgcttaagggtatagggctgga Alignment from Spaln_nt2Genome AGACCGATGAGTGCCGATTGAACCAGAATATCTGTGGCCATGGACAGTGTGTGCCTGGCCCCTCGGATTACTCCTGCCACTGCAACGCTGGCTACCGGTCACACCCGCAGCACCGCTACTGTGTTG gcaaaatacctcttgtcaaacatctatgtcctgccttctctgggccccagAGACTGATGACTGCCGGCTAAATCAGAATATCTGTGGCCATGGACAGTGTGTGCCCGGTCCTTCTGATTACTCCTGCCATTGCAATGCTGGCTACCGGTCACACCCACAGCACCGTTACTGTGTTGgtgggttatatgtgattaagggtatgggtgcttaagggtatagggctgga Alignment from Pairagon AGACCGATGAGTGCCGATTGAACCAGAATATCTGTGGCCATGGACAGTGTGTGCCTGGCCCCTCGGATTACTCCTGCCACTGCAACGCTGGCTACCGGTCACACCCGCAGCACCGCTACTGTGTTG gcaaaatacctcttgtcaaacatctatgtcctgccttctctgggccccagAGACTGATGACTGCCGGCTAAATCAGAATATCTGTGGCCATGGACAGTGTGTGCCCGGTCCTTCTGATTACTCCTGCCATTGCAATGCTGGCTACCGGTCACACCCACAGCACCGTTACTGTGTTGgtgggttatatgtgattaagggtatgggtgcttaagggtatagggctgga Alignment from Exonerate_protein2genome AGACCGATGAGTGCCGATTGAACCAGAATATCTGTGGCCATGGACAGTGTGTGCCTGGCCCCTCGGATTACTCCTGCCACTGCAACGCTGGCTACCGGTCACACCCGCAGCACCGCTACTGTGTTG gcaaaatacctcttgtcaaacatctatgtcctgccttctctgggccccagAGACTGATGACTGCCGGCTAAATCAGAATATCTGTGGCCATGGACAGTGTGTGCCCGGTCCTTCTGATTACTCCTGCCATTGCAATGCTGGCTACCGGTCACACCCACAGCACCGTTACTGTGTTGgtgggttatatgtgattaagggtatgggtgcttaagggtatagggctgga Alignment from Exonerate_coding2genome GAGACCGATGAGTGCCGATTGAACCAGAATATCTGTGGCCATGGACAGTGTGTGCCTGGCCCCTCGGATTACTCCTGCCACTGCAACGCTGGCTACCGGTCACACCCGCAGCACCGCTACTGTGTTG gcaaaatacctcttgtcaaacatctatgtcctgccttctctgggccccaGAGACTGATGACTGCCGGCTAAATCAGAATATCTGTGGCCATGGACAGTGTGTGCCCGGTCCTTCTGATTACTCCTGCCATTGCAATGCTGGCTACCGGTCACACCCACAGCACCGTTACTGTGTTGgtgggttatatgtgattaagggtatgggtgcttaagggtatagggctgga Alignment from GeneWise AGACCGATGAGTGCCGATTGAACCAGAATATCTGTGGCCATGGACAGTGTGTGCCTGGCCCCTCGGATTACTCCTGCCACTGCAACGCTGGCTACCGGTCACACCCGCAGCACCGCTACTGTGTTG gcaaaatacctcttgtcaaacatctatgtcctgccttctctgggccccagAGACTGATGACTGCCGGCTAAATCAGAATATCTGTGGCCATGGACAGTGTGTGCCCGGTCCTTCTGATTACTCCTGCCATTGCAATGCTGGCTACCGGTCACACCCACAGCACCGTTACTGTGTTGgtgggttatatgtgattaagggtatgggtgcttaagggtatagggctgga #### Ltbp3_ID1269_21 --> 2 - 1 Original Alignment ccGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTg tgtgacatggggatataagtgatcacacgtgtgacttaacactgttgtagcaGAATTTCATAGG---TGTCCTGATGGTAAAGGCTATACACAAGACAATAACATTGTGAATTATGGCATCCCTACCCACCGGggtatgaatgccaatttagtttttaggtttcctgatgagacatgactagca Alignment from CESAR ccGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTg tgtgacatggggatataagtgatcacacgtgtgacttaacactgttgtagcaGAATTTCATAGG---TGTCCTGATGGTAAAGGCTATACACAAGACAATAACATTGTGAATTATGGCATCCCTACCCACCGGggtatgaatgccaatttagtttttaggtttcctgatgagacatgactagca Alignment from Spaln_aa2Genome CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG tgtgacatggggatataagtgatcacacgtgtgacttaacactgttgtagCAGAATTTCATAGG---TGTCCTGATGGTAAAGGCTATACACAAGACAATAACATTGTGAATTATGGCATCCCTACCCACCGGGgtatgaatgccaatttagtttttaggtttcctgatgagacatgactagca Alignment from Spaln_nt2Genome CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG tgtgacatggggatataagtgatcacacgtgtgacttaacactgttgtagCAGAATTTCATAG---GTGTCCTGATGGTAAAGGCTATACACAAGACAATAACATTGTGAATTATGGCATCCCTACCCACCGGGgtatgaatgccaatttagtttttaggtttcctgatgagacatgactagca Alignment from Pairagon CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG tgtgacatggggatataagtgatcacacgtgtgacttaacactgttgtagCAGAATTTCATAG---GTGTCCTGATGGTAAAGGCTATACACAAGACAATAACATTGTGAATTATGGCATCCCTACCCACCGGGgtatgaatgccaatttagtttttaggtttcctgatgagacatgactagca Alignment from Exonerate_protein2genome CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG tgtgacatggggatataagtgatcacacgtgtgacttaacactgttgtagCAGAATTTCATAGG---TGTCCTGATGGTAAAGGCTATACACAAGACAATAACATTGTGAATTATGGCATCCCTACCCACCGGGgtatgaatgccaatttagtttttaggtttcctgatgagacatgactagca Alignment from Exonerate_coding2genome tgtgacatggggatataagtgatcacacgtgtgacttaacactgttgtagcagaatttcataggtgtcctgatggtaaaggctatacacaagacaataacattgtgaattatggcatccctacccaccggggtatgaatgccaatttagtttttaggtttcctgatgagacatgactagca Alignment from GeneWise CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG tgtgacatggggatataagtgatcacacgtgtgacttaacactgttgtagCAGAATTTCATAGG---TGTCCTGATGGTAAAGGCTATACACAAGACAATAACATTGTGAATTATGGCATCCCTACCCACCGGGgtatgaatgccaatttagtttttaggtttcctgatgagacatgactagca #### Ltbp3_ID1270_22 --> 2 - 1 Original Alignment acATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGg acatctgagtaataggccactgggatctagacttttattttcatacacagatACTGATGAATGCATATTGTTCGGGGCAGAGATCTGTAAGGAGGGTAAATTTGTGAACATGCAGCCTGGCTATGAGTGCTATTGCAAGCAGGGCTTCTATTTCGATGGTAATCTTCTAGAGTGTGTAggtaagttagactatctttccactcaaggaaaagagctgagtttaccataa Alignment from CESAR acATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGg acatctgagtaataggccactgggatctagacttttattttcatacacagatACTGATGAATGCATATTGTTCGGGGCAGAGATCTGTAAGGAGGGTAAATTTGTGAACATGCAGCCTGGCTATGAGTGCTATTGCAAGCAGGGCTTCTATTTCGATGGTAATCTTCTAGAGTGTGTAggtaagttagactatctttccactcaaggaaaagagctgagtttaataata Alignment from Spaln_aa2Genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG acatctgagtaataggccactgggatctagacttttattttcatacacagATACTGATGAATGCATATTGTTCGGGGCAGAGATCTGTAAGGAGGGTAAATTTGTGAACATGCAGCCTGGCTATGAGTGCTATTGCAAGCAGGGCTTCTATTTCGATGGTAATCTTCTAGAGTGTGTAGgtaagttagactatctttccactcaaggaaaagagctgagtttaccataa Alignment from Spaln_nt2Genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG acatctgagtaataggccactgggatctagacttttattttcatacacagATACTGATGAATGCATATTGTTCGGGGCAGAGATCTGTAAGGAGGGTAAATTTGTGAACATGCAGCCTGGCTATGAGTGCTATTGCAAGCAGGGCTTCTATTTCGATGGTAATCTTCTAGAGTGTGTAGgtaagttagactatctttccactcaaggaaaagagctgagtttaccataa Alignment from Pairagon ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG acatctgagtaataggccactgggatctagacttttattttcatacacagATACTGATGAATGCATATTGTTCGGGGCAGAGATCTGTAAGGAGGGTAAATTTGTGAACATGCAGCCTGGCTATGAGTGCTATTGCAAGCAGGGCTTCTATTTCGATGGTAATCTTCTAGAGTGTGTAGgtaagttagactatctttccactcaaggaaaagagctgagtttaccataa Alignment from Exonerate_protein2genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG acatctgagtaataggccactgggatctagacttttattttcatacacagATACTGATGAATGCATATTGTTCGGGGCAGAGATCTGTAAGGAGGGTAAATTTGTGAACATGCAGCCTGGCTATGAGTGCTATTGCAAGCAGGGCTTCTATTTCGATGGTAATCTTCTAGAGTGTGTAGgtaagttagactatctttccactcaaggaaaagagctgagtttaccataa Alignment from Exonerate_coding2genome acatctgagtaataggccactgggatctagacttttattttcatacacagatactgatgaatgcatattgttcggggcagagatctgtaaggagggtaaatttgtgaacatgcagcctggctatgagtgctattgcaagcagggcttctatttcgatggtaatcttctagagtgtgtaggtaagttagactatctttccactcaaggaaaagagctgagtttaccataa Alignment from GeneWise ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG acatctgagtaataggccactgggatctagacttttattttcatacacagATACTGATGAATGCATATTGTTCGGGGCAGAGATCTGTAAGGAGGGTAAATTTGTGAACATGCAGCCTGGCTATGAGTGCTATTGCAAGCAGGGCTTCTATTTCGATGGTAATCTTCTAGAGTGTGTAGgtaagttagactatctttccactcaaggaaaagagctgagtttaccataa #### Ltbp3_ID1273_25 --> 2 - 1 Original Alignment ACGTGGCACCg ggTCCCAGTGCCCGACTTCACAGAGTGAGAGC---AATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTCTCCGCGAg ACGTGGTACTggtgggcatttttgaaggattttaattctgttccctccagggTCCCAGTGCTCCACTTTACAGGGTGAGATGCTTAACTCATTTTGGGATACTACCCCGGTGCTACTTGGG---------CGAggtaagacaaagctggtgattgtatgcaaagtctactataggttctatgcg Alignment from CESAR ACGTGGCACCg ggTCCCAGTGCCCGACTTCACAGAGTGAGAGC---AATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTCTCCGCGAg ACGTGGTACTggtgaggatttttgaaggattttaattctgttccctccagggTCCCAGTGCTCCACTTTACAGGGTGAGATGCTTAACTCATTTTGGGATACTACCCCGGTGCTACTTGGG---------CGAggtaagacaaagctggtgattgtatgcaaagtctactataggtatctgtgg Alignment from Spaln_aa2Genome ACGTGGCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGAGC---AATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTCTCCGCGAG ACGTGGTACTGgtgggcatttttgaaggattttaattctgttccctccagGGTCCCAGTGCTCCACTTTACAGGGTGAGATGCTTAACTCATTTTGGGATACTACCCCGGTGCTACTTGGG---------CGAGgtaagacaaagctggtgattgtatgcaaagtctactataggttctatgcg Alignment from Spaln_nt2Genome ACGTGGCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGA-GC--AATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTCTCCGCGAG ACGTGGTACTGgtgggcatttttgaaggattttaattctgttccctccagGGTCCCAGTGCTCCACTTTACAGGGTGAGATGCTTAACTCATTTTGGGATACTACCCCGGTGCTACTTGG---------GCGAGgtaagacaaagctggtgattgtatgcaaagtctactataggttctatgcg Alignment from Pairagon ACGTGGCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGA---GCAATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTCTCCGCGAG ACGTGGTACTGgtgggcatttttgaaggattttaattctgttccctccagGGTCCCAGTGCTCCACTTTACAGGGTGAGATGCTTAACTCATTTTGGGATACTACCCCGGTGCTACTTGG---------GCGAGgtaagacaaagctggtgattgtatgcaaagtctactataggttctatgcg Alignment from Exonerate_protein2genome ACGTGGCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGAGC---AATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTCTCCGCGAG ACGTGGTACTGgtgggcatttttgaaggattttaattctgttccctccagGGTCCCAGTGCTCCACTTTACAGGGTGAGATGCTTAACTCATTTTGGGATACTACCCCGGTGCTACTTGGG---------CGAGgtaagacaaagctggtgattgtatgcaaagtctactataggttctatgcg Alignment from Exonerate_coding2genome acgtggtactggtgggcatttttgaaggattttaattctgttccctccagggtcccagtgctccactttacagggtgagatgcttaactcattttgggatactaccccggtgctacttgggcgaggtaagacaaagctggtgattgtatgcaaagtctactataggttctatgcg Alignment from GeneWise ACGTGGCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGAGC---AATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAG- --TCTCCGCG ACGTGGTACTGgtgggcatttttgaaggattttaattctgttccctccagGGTCCCAGTGCTCCACTTTACAGGGTGAGATGCTTAACTCATTTTGGGATACTACCCCGGTGCTACTTGGGCGAGgtaagacaaagctggtgattgtatgcaaagtctactatagGTTCTATGCG #### Macrod1_ID2051_6 --> 2 - 0 Original Alignment atGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGC---CTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG ggaagacatcattggcactcccctctttcgcccgtgtctcttcttgaaagatGTCATT------GTGGGGCTCATTGCAGTAGGG------------AGTGAGGCGGCTGAATTCCACAGCTGTTATCTGAGCAGTCCTTTAGACCTACTGCTAGAACACAGATTATGTCCAGTTgtgagttggttgaatcaatggcaaaagctggcatttaaacactagcagaa Alignment from CESAR atGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGC---CTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG ggaagacatcattggcactcccctctttcgcccgtgtctcttcttgaaagatGTCATT------GTGGGGCTCATTGCAGTAGGG------------AGTGAGGCGGCTGAATTCCACAGCTGTTATCTGAGCAGTCCTTTAGACCTACTGCTAGAACACAGATTATGTCCAGTTgtgagttggttgaatcaatggcaaaagctggcatttaaacactagcagaa Alignment from Spaln_aa2Genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGC---CTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG ggaagacatcattggcactcccctctttcgcccgtgtctcttcttgaaagATGTCATT------GTGGGGCTCATTGCAGTAGGG------------AGTGAGGCGGCTGAATTCCACAGCTGTTATCTGAGCAGTCCTTTAGACCTACTGCTAGAACACAGATTATGTCCAGTTgtgagttggttgaatcaatggcaaaagctggcatttaaacactagcagaa Alignment from Spaln_nt2Genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCC---TGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG ggaagacatcattggcactcccctctttcgcccgtgtctcttcttgaaagATGTCAT------TGTGGGGCTCATTGCAGTAGG------------GAGTGAGGCGGCTGAATTCCACAGCTGTTATCTGAGCAGTCCTTTAGACCTACTGCTAGAACACAGATTATGTCCAGTTgtgagttggttgaatcaatggcaaaagctggcatttaaacactagcagaa Alignment from Pairagon ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCC---TGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG ggaagacatcattggcactcccctctttcgcccgtgtctcttcttgaaagATGTCATT------GTGGGGCTCATTGCAGTAGG------------GAGTGAGGCGGCTGAATTCCACAGCTGTTATCTGAGCAGTCCTTTAGACCTACTGCTAGAACACAGATTATGTCCAGTTgtgagttggttgaatcaatggcaaaagctggcatttaaacactagcagaa Alignment from Exonerate_protein2genome GTATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGC---CTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG ggaagacatcattggcactcccctctttcgCCCGTGTCTCTTCTTGAAAGATGTCATTGTGGGGCTCATTGCAGTAGGGAGTGAGGCGGCTGAATTCCACAGCTGTTATCTGAGCAGTCCTTTAGACCTACTGCTAGAACACAGATTATGTCCAGTTgtgagttggttgaatcaatggcaaaagctggcatttaaacactagcagaa Alignment from Exonerate_coding2genome ggaagacatcattggcactcccctctttcgcccgtgtctcttcttgaaagatgtcattgtggggctcattgcagtagggagtgaggcggctgaattccacagctgttatctgagcagtcctttagacctactgctagaacacagattatgtccagttgtgagttggttgaatcaatggcaaaagctggcatttaaacactagcagaa Alignment from GeneWise ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGC---CTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG ggaagacatcattggcactcccctctttcgcccgtgtctcttcttgaaagATGTCATT------GTGGGGCTCATTGCAGTAGGG------------AGTGAGGCGGCTGAATTCCACAGCTGTTATCTGAGCAGTCCTTTAGACCTACTGCTAGAACACAGATTATGTCCAGTTgtgagttggttgaatcaatggcaaaagctggcatttaaacactagcagaa #### Macrod1_ID2054_9 --> 0 - 1 Original Alignment GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAg ttcacctgttatgttccaagtttaagtattcatctttgttttgttttcagGTGGATCGGCTCATTATCTGTGTGTGCTTGGAGAAAGAAGAGGGCATTTACAGGGAACATCTTCCCCATTATTTCCCAGTAggtaagcacaagtggctcctatgcttgaagggacccttctccccctgtctc Alignment from CESAR GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAg ttcacctgttatgttccaagtttaagtattcatctttgttttgttttcagGTGGATCGGCTCATTATCTGTGTGTGCTTGGAGAAAGAAGAGGGCATTTACAGGGAACATCTTCCCCATTATTTCCCAGTAggtaagcacaagtggctcctatgcttgaagggacccctgttcactcctcct Alignment from Spaln_aa2Genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAG ttcacctgttatgttccaagtttaagtattcatctttgttttgttttcagGTGGATCGGCTCATTATCTGTGTGTGCTTGGAGAAAGAAGAGGGCATTTACAGGGAACATCTTCCCCATTATTTCCCAGTAGgtaagcacaagtggctcctatgcttgaagggacccttctccccctgtctc Alignment from Spaln_nt2Genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAGCC ttcacctgttatgttccaagtttaagtattcatctttgttttgttttcagGTGGATCGGCTCATTATCTGTGTGTGCTTGGAGAAAGAAGAGGGCATTTACAGGGAACATCTTCCCCATTATTTCCCAGTAGGTaagcacaagtggctcctatgcttgaagggacccttctccccctgtctc Alignment from Pairagon GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAGCC ttcacctgttatgttccaagtttaagtattcatctttgttttgttttcagGTGGATCGGCTCATTATCTGTGTGTGCTTGGAGAAAGAAGAGGGCATTTACAGGGAACATCTTCCCCATTATTTCCCAGTAGGTaagcacaagtggctcctatgcttgaagggacccttctccccctgtctc Alignment from Exonerate_protein2genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTA ttcacctgttatgttccaagtttaagtattcatctttgttttgttttcagGTGGATCGGCTCATTATCTGTGTGTGCTTGGAGAAAGAAGAGGGCATTTACAGGGAACATCTTCCCCATTATTTCCCAGTAggtaagcacaagtggctcctatgcttgaagggacccttctccccctgtctc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAGCC ttcacctgttatgttccaagtttaagtattcatctttgttttgttttcagGTGGATCGGCTCATTATCTGTGTGTGCTTGGAGAAAGAAGAGGGCATTTACAGGGAACATCTTCCCCATTATTTCCCAGTAGGTaagcacaagtggctcctatgcttgaagggacccttctccccctgtctc #### Map3k11_ID1206_7 --> 2 - 2 Original Alignment tgGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGag tccaccatcccactgtaaattatgttgcacgcctcactgtactcctgcagtgGAGCCTACAGAATCAGGACAGACATGGAGTCGCCAGTCCCCTGGACGTCTCGAAGATTCTAGCAATGGGGAGAGGTGTGCCTGCTGGGCTTGGGGTCCCGCCTCCCCCAAGCCTGGGGAGGCTCAAAATGGGaggtaaggaccccagaaattctgtatcctggtgttcggctgtatgagggctg Alignment from CESAR tgGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGag tccaccatcccactgtaaattatgttgcacgcctcactgtactcctgcagtgGAGCCTACAGAATCAGGACAGACATGGAGTCGCCAGTCCCCTGGACGTCTCGAAGATTCTAGCAATGGGGAGAGGTGTGCCTGCTGGGCTTGGGGTCCCGCCTCCCCCAAGCCTGGGGAGGCTCAAAATGGGaggtaaggaccccagaaattctgtatcctggtgttcggctgtatgagggctg Alignment from Spaln_aa2Genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG tccaccatcccactgtaaattatgttgcacgcctcactgtactcctgcagTGGAGCCTACAGAATCAGGACAGACATGGAGTCGCCAGTCCCCTGGACGTCTCGAAGATTCTAGCAATGGGGAGAGGTGTGCCTGCTGGGCTTGGGGTCCCGCCTCCCCCAAGCCTGGGGAGGCTCAAAATGGGAGgtaaggaccccagaaattctgtatcctggtgttcggctgtatgagggctg Alignment from Spaln_nt2Genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG tccaccatcccactgtaaattatgttgcacgcctcactgtactcctgcagTGGAGCCTACAGAATCAGGACAGACATGGAGTCGCCAGTCCCCTGGACGTCTCGAAGATTCTAGCAATGGGGAGAGGTGTGCCTGCTGGGCTTGGGGTCCCGCCTCCCCCAAGCCTGGGGAGGCTCAAAATGGGAGgtaaggaccccagaaattctgtatcctggtgttcggctgtatgagggctg Alignment from Pairagon TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG tccaccatcccactgtaaattatgttgcacgcctcactgtactcctgcagTGGAGCCTACAGAATCAGGACAGACATGGAGTCGCCAGTCCCCTGGACGTCTCGAAGATTCTAGCAATGGGGAGAGGTGTGCCTGCTGGGCTTGGGGTCCCGCCTCCCCCAAGCCTGGGGAGGCTCAAAATGGGAGgtaaggaccccagaaattctgtatcctggtgttcggctgtatgagggctg Alignment from Exonerate_protein2genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG tccaccatcccactgtaaattatgttgcacgcctcactgtactcctgcagTGGAGCCTACAGAATCAGGACAGACATGGAGTCGCCAGTCCCCTGGACGTCTCGAAGATTCTAGCAATGGGGAGAGGTGTGCCTGCTGGGCTTGGGGTCCCGCCTCCCCCAAGCCTGGGGAGGCTCAAAATGGGAGgtaaggaccccagaaattctgtatcctggtgttcggctgtatgagggctg Alignment from Exonerate_coding2genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG tccaccatcccactgtaaattatgttgcacgcctcactgtactcctgcagTGGAGCCTACAGAATCAGGACAGACATGGAGTCGCCAGTCCCCTGGACGTCTCGAAGATTCTAGCAATGGGGAGAGGTGTGCCTGCTGGGCTTGGGGTCCCGCCTCCCCCAAGCCTGGGGAGGCTCAAAATGGGAGgtaaggaccccagaaattctgtatcctggtgttcggctgtatgagggctg Alignment from GeneWise TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG tccaccatcccactgtaaattatgttgcacgcctcactgtactcctgcagTGGAGCCTACAGAATCAGGACAGACATGGAGTCGCCAGTCCCCTGGACGTCTCGAAGATTCTAGCAATGGGGAGAGGTGTGCCTGCTGGGCTTGGGGTCCCGCCTCCCCCAAGCCTGGGGAGGCTCAAAATGGGAGgtaaggaccccagaaattctgtatcctggtgttcggctgtatgagggctg #### Map4k2_ID1623_3 --> 2 - 2 Original Alignment ggGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCag aatcattcaggaacagaacaacgcattgtcttcttgttcatcccacccagggGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCAGTAGCTACCTCaggtgagcctgctcagacctacatacccaggtgccttactcttaggtgttca Alignment from CESAR ggGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCag aatcattcaggaacagaacaacgcattgtcttcttgttcatcccacccagggGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCAGTAGCTACCTCaggtgagcctgctcagacctacatacccaggtgccttactcttaggtgttca Alignment from Spaln_aa2Genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG aatcattcaggaacagaacaacgcattgtcttcttgttcatcccacccagGGGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCAGTAGCTACCTCAGgtgagcctgctcagacctacatacccaggtgccttactcttaggtgttca Alignment from Spaln_nt2Genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG aatcattcaggaacagaacaacgcattgtcttcttgttcatcccacccagGGGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCAGTAGCTACCTCAGgtgagcctgctcagacctacatacccaggtgccttactcttaggtgttca Alignment from Pairagon GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG aatcattcaggaacagaacaacgcattgtcttcttgttcatcccacccagGGGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCAGTAGCTACCTCAGgtgagcctgctcagacctacatacccaggtgccttactcttaggtgttca Alignment from Exonerate_protein2genome aatcattcaggaacagaacaacgcattgtcttcttgttcatcccacccaggggatgacatcagctctcttcagcaggaaatcaccatccttcgtgaatgccgccaccccaatgttgtggcctacatcagtagctacctcaggtgagcctgctcagacctacatacccaggtgccttactcttaggtgttca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG aatcattcaggaacagaacaacgcattgtcttcttgttcatcccacccagGGGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCAGTAGCTACCTCAGgtgagcctgctcagacctacatacccaggtgccttactcttaggtgttca #### Map4k2_ID1628_7 --> 0 - 1 Original Alignment TAAG------ GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGg TAAGGTAGGAgtgagcatccaggtggttattatttctacatgtatattagGGTGCAAACCTCCTGCTCACATTGCAGGGAGAGGTGCAATTGtgtaagtgtcttgtggacttcagagacaatcaatggcacatgctggggctc Alignment from CESAR TAAG GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGg TAAGgtaggagttagtatccaggtggttattatttctacatgtatattagGGTGCAAACCTCCTGCTCACATTGCAGGGAGAGGTGCAATTGtgtaagtgtcttgtggacttcagagacaatcaatggcacatgctggggctc Alignment from Spaln_aa2Genome TAAG GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG TAAGgtaggagtgagcatccaggtggttattatttctacatgtatattagGGTGCAAACCTCCTGCTCACATTGCAGGGAGAGGTGCAATTGTgtaagtgtcttgtggacttcagagacaatcaatggcacatgctggggctc Alignment from Spaln_nt2Genome TAAG GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG TAAGgtaggagtgagcatccaggtggttattatttctacatgtatattagGGTGCAAACCTCCTGCTCACATTGCAGGGAGAGGTGCAATTGTgtaagtgtcttgtggacttcagagacaatcaatggcacatgctggggctc Alignment from Pairagon TAAG GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG TAAGgtaggagtgagcatccaggtggttattatttctacatgtatattagGGTGCAAACCTCCTGCTCACATTGCAGGGAGAGGTGCAATTGTgtaagtgtcttgtggacttcagagacaatcaatggcacatgctggggctc Alignment from Exonerate_protein2genome TAAG GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG TAAGgtaggagtgagcatccaggtggttattatttctacatgtatattagGGTGCAAACCTCCTGCTCACATTGCAGGGAGAGGTGCAATTGTgtaagtgtcttgtggacttcagagacaatcaatggcacatgctggggctc Alignment from Exonerate_coding2genome taaggtaggagtgagcatccaggtggttattatttctacatgtatattagggtgcaaacctcctgctcacattgcagggagaggtgcaattgtgtaagtgtcttgtggacttcagagacaatcaatggcacatgctggggctc Alignment from GeneWise TAAG GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG TAAGgtaggagtgagcatccaggtggttattatttctacatgtatattagGGTGCAAACCTCCTGCTCACATTGCAGGGAGAGGTGCAATTGTgtaagtgtcttgtggacttcagagacaatcaatggcacatgctggggctc #### Map4k2_ID1630_9 --> 1 - 2 Original Alignment gATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGag agagcatatggaaggatgacctgatttaatacttttaaaattaatttcaggATGGCCCCAGAAGTTGCTGCTGTGGAGTGTAAGGGAGGCTACAATGAGCTATGTGACATATGGGCATTAGGTATTACTCCAGTGGAATCAAGTGAACTCCAACATCTGTTACTCCAGCTGCACCCCATGaggtgagttcagaacttgcagtgttcttgtcccttcttattcccttgacgat Alignment from CESAR gATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGag agagcatatggaaggatgacctgatttaatacttttaaaattaatttcaggATGGCCCCAGAAGTTGCTGCTGTGGAGTGTAAGGGAGGCTACAATGAGCTATGTGACATATGGGCATTAGGTATTACTCCAGTGGAATCAAGTGAACTCCAACATCTGTTACTCCAGCTGCACCCCATGaggtgagttcagaacttgcagtgttcttgtcccttcttattcccttgacctt Alignment from Spaln_aa2Genome GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG agagcatatggaaggatgacctgatttaatacttttaaaattaatttcagGATGGCCCCAGAAGTTGCTGCTGTGGAGTGTAAGGGAGGCTACAATGAGCTATGTGACATATGGGCATTAGGTATTACTCCAGTGGAATCAAGTGAACTCCAACATCTGTTACTCCAGCTGCACCCCATGAGgtgagttcagaacttgcagtgttcttgtcccttcttattcccttgacgat Alignment from Spaln_nt2Genome GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG agagcatatggaaggatgacctgatttaatacttttaaaattaatttcagGATGGCCCCAGAAGTTGCTGCTGTGGAGTGTAAGGGAGGCTACAATGAGCTATGTGACATATGGGCATTAGGTATTACTCCAGTGGAATCAAGTGAACTCCAACATCTGTTACTCCAGCTGCACCCCATGAGgtgagttcagaacttgcagtgttcttgtcccttcttattcccttgacgat Alignment from Pairagon GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTG---------------------------TTCCACCTGCACCCCATGAG agagcatatggaaggatgacctgatttaatacttttaaaattaatttcagGATGGCCCCAGAAGTTGCTGCTGTGGAGTGTAAGGGAGGCTACAATGAGCTATGTGACATATGGGCATTAGGTATTACT---------------------------CCAGTGGAATCAAGTGAACTCCAACATCTGTTACTCCAGCTGCACCCCATGAGgtgagttcagaacttgcagtgttcttgtcccttcttattcccttgacgat Alignment from Exonerate_protein2genome agagcatatggaaggatgacctgatttaatacttttaaaattaatttcaggatggccccagaagttgctgctgtggagtgtaagggaggctacaatgagctatgtgacatatgggcattaggtattactccagtggaatcaagtgaactccaacatctgttactccagctgcaccccatgaggtgagttcagaacttgcagtgttcttgtcccttcttattcccttgacgat Alignment from Exonerate_coding2genome agagcatatggaaggatgacctgatttaatacttttaaaattaatttcaggatggccccagaagttgctgctgtggagtgtaagggaggctacaatgagctatgtgacatatgggcattaggtattactccagtggaatcaagtgaactccaacatctgttactccagctgcaccccatgaggtgagttcagaacttgcagtgttcttgtcccttcttattcccttgacgat Alignment from GeneWise GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG agagcatatggaaggatgacctgatttaatacttttaaaattaatttcagGATGGCCCCAGAAGTTGCTGCTGTGGAGTGTAAGGGAGGCTACAATGAGCTATGTGACATATGGGCATTAGGTATTACTCCAGTGGAATCAAGTGAACTCCAACATCTGTTACTCCAGCTGCACCCCATGAGgtgagttcagaacttgcagtgttcttgtcccttcttattcccttgacgat #### Map4k2_ID1631_10 --> 1 - 2 Original Alignment gGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTtg tgttcttgtcccttcttattcccttgaccttttttttctcttgaattcaggGCACTGATGCTCATGTCAAAGAGCAGTTTCCAGCCACCTAAGCTAAGAGATAAGACACGCtggtgcctctccaccacaactggggacctgctttctatatgagatagactct Alignment from CESAR gGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTtg tgttcttgtcccttcttattcccttgaccttttttttctcttgaattcaggGCACTGATGCTCATGTCAAAGAGCAGTTTCCAGCCACCTAAGCTAAGAGATAAGACACGCtggtgcctctccaccacaactggggacctgctttctatatgagatagactct Alignment from Spaln_aa2Genome GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTTG tgttcttgtcccttcttattcccttgaccttttttttctcttgaattcagGGCACTGATGCTCATGTCAAAGAGCAGTTTCCAGCCACCTAAGCTAAGAGATAAGACACGCTGgtgcctctccaccacaactggggacctgctttctatatgagatagactct Alignment from Spaln_nt2Genome GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTTG tgttcttgtcccttcttattcccttgaccttttttttctcttgaattcagGGCACTGATGCTCATGTCAAAGAGCAGTTTCCAGCCACCTAAGCTAAGAGATAAGACACGCTGgtgcctctccaccacaactggggacctgctttctatatgagatagactct Alignment from Pairagon GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTTG tgttcttgtcccttcttattcccttgaccttttttttctcttgaattcagGGCACTGATGCTCATGTCAAAGAGCAGTTTCCAGCCACCTAAGCTAAGAGATAAGACACGCTGgtgcctctccaccacaactggggacctgctttctatatgagatagactct Alignment from Exonerate_protein2genome GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTTG tgttcttgtcccttcttattcccttgaccttttttttctcttgaattcagGGCACTGATGCTCATGTCAAAGAGCAGTTTCCAGCCACCTAAGCTAAGAGATAAGACACGCTGgtgcctctccaccacaactggggacctgctttctatatgagatagactct Alignment from Exonerate_coding2genome tgttcttgtcccttcttattcccttgaccttttttttctcttgaattcagggcactgatgctcatgtcaaagagcagtttccagccacctaagctaagagataagacacgctggtgcctctccaccacaactggggacctgctttctatatgagatagactct Alignment from GeneWise GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTTG tgttcttgtcccttcttattcccttgaccttttttttctcttgaattcagGGCACTGATGCTCATGTCAAAGAGCAGTTTCCAGCCACCTAAGCTAAGAGATAAGACACGCTGgtgcctctccaccacaactggggacctgctttctatatgagatagactct #### Map4k2_ID1633_12 --> 0 - 0 Original Alignment CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaggtggaagattttgaaaaagggatgttttggggaatggggtttagCATCCTTTCACAACCCAACATCTCCCTCCAGCACTTCTTACCCAACTCCTTGACAAGACTAGTGATCCCCATTTAGGTACCCTCTCCCCTGAAGACAGTAAGCTAAAGgtaagataggggaccaggtatagcttgcggggtaggtggtgtccacaaga Alignment from CESAR CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaggtggaagattttgaaaaagggatgttttggggaatggggtttagCATCCTTTCACAACCCAACATCTCCCTCCAGCACTTCTTACCCAACTCCTTGACAAGACTAGTGATCCCCATTTAGGTACCCTCTCCCCTGAAGACAGTAAGCTAAAGgtaagataggggaccaggtatagcttgcggggtaggtggtgtccacaaga Alignment from Spaln_aa2Genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaggtggaagattttgaaaaagggatgttttggggaatggggtttagCATCCTTTCACAACCCAACATCTCCCTCCAGCACTTCTTACCCAACTCCTTGACAAGACTAGTGATCCCCATTTAGGTACCCTCTCCCCTGAAGACAGTAAGCTAAAGgtaagataggggaccaggtatagcttgcggggtaggtggtgtccacaaga Alignment from Spaln_nt2Genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaggtggaagattttgaaaaagggatgttttggggaatggggtttagCATCCTTTCACAACCCAACATCTCCCTCCAGCACTTCTTACCCAACTCCTTGACAAGACTAGTGATCCCCATTTAGGTACCCTCTCCCCTGAAGACAGTAAGCTAAAGgtaagataggggaccaggtatagcttgcggggtaggtggtgtccacaaga Alignment from Pairagon CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaggtggaagattttgaaaaagggatgttttggggaatggggtttagCATCCTTTCACAACCCAACATCTCCCTCCAGCACTTCTTACCCAACTCCTTGACAAGACTAGTGATCCCCATTTAGGTACCCTCTCCCCTGAAGACAGTAAGCTAAAGgtaagataggggaccaggtatagcttgcggggtaggtggtgtccacaaga Alignment from Exonerate_protein2genome gaaaaggtggaagattttgaaaaagggatgttttggggaatggggtttagcatcctttcacaacccaacatctccctccagcacttcttacccaactccttgacaagactagtgatccccatttaggtaccctctcccctgaagacagtaagctaaaggtaagataggggaccaggtatagcttgcggggtaggtggtgtccacaaga Alignment from Exonerate_coding2genome gaaaaggtggaagattttgaaaaagggatgttttggggaatggggtttagcatcctttcacaacccaacatctccctccagcacttcttacccaactccttgacaagactagtgatccccatttaggtaccctctcccctgaagacagtaagctaaaggtaagataggggaccaggtatagcttgcggggtaggtggtgtccacaaga Alignment from GeneWise CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaggtggaagattttgaaaaagggatgttttggggaatggggtttagCATCCTTTCACAACCCAACATCTCCCTCCAGCACTTCTTACCCAACTCCTTGACAAGACTAGTGATCCCCATTTAGGTACCCTCTCCCCTGAAGACAGTAAGCTAAAGgtaagataggggaccaggtatagcttgcggggtaggtggtgtccacaaga #### Map4k2_ID1645_24 --> 2 - 2 Original Alignment ggAAATCCACACATATCTGGGCGCATGAC------CTCCCGGGCCTGTTTGAGCAGCGAAGGCTGCAGCACCAGGCACCCCTCTCCATCCCTACCAACCGCATCACTCAGCGCATCATCCCCag acatgttcccaagggtcttctgggctatctaatctctccttttttgacagggAGGTTCACGCACATCTGGGCACATGACTTACCTCTACCAGGTCTGTTTGAGCAGCGTAGACTACAGCATCAGGCACCTCTGTCAATCCCTACCAACTGCATCACCCAGCACATTATACCAaggtaagtagttctgcagttctagaggtttgcgcatactacataagtatgaa Alignment from CESAR ggAAATCCACACATATCTGGGCGCATGAC------CTCCCGGGCCTGTTTGAGCAGCGAAGGCTGCAGCACCAGGCACCCCTCTCCATCCCTACCAACCGCATCACTCAGCGCATCATCCCCag acatgttcccaagggtcttctgggctatctaatctctccttttttgacagggAGGTTCACGCACATCTGGGCACATGACTTACCTCTACCAGGTCTGTTTGAGCAGCGTAGACTACAGCATCAGGCACCTCTGTCAATCCCTACCAACTGCATCACCCAGCACATTATACCAaggtaagtagttctgcagttctagaggtttgcgcatactacataagtatgaa Alignment from Spaln_aa2Genome GGAAATCCACACATATCTGGGCGCATGAC------CTCCCGGGCCTGTTTGAGCAGCGAAGGCTGCAGCACCAGGCACCCCTCTCCATCCCTACCAACCGCATCACTCAGCGCATCATCCCCAG acatgttcccaagggtcttctgggctatctaatctctccttttttgacagGGAGGTTCACGCACATCTGGGCACATGACTTACCTCTACCAGGTCTGTTTGAGCAGCGTAGACTACAGCATCAGGCACCTCTGTCAATCCCTACCAACTGCATCACCCAGCACATTATACCAAGgtaagtagttctgcagttctagaggtttgcgcatactacataagtatgaa Alignment from Spaln_nt2Genome GGAAATCCACACATATCTGGGCGCATGAC------CTCCCGGGCCTGTTTGAGCAGCGAAGGCTGCAGCACCAGGCACCCCTCTCCATCCCTACCAACCGCATCACTCAGCGCATCATCCCCAG acatgttcccaagggtcttctgggctatctaatctctccttttttgacagGGAGGTTCACGCACATCTGGGCACATGACTTACCTCTACCAGGTCTGTTTGAGCAGCGTAGACTACAGCATCAGGCACCTCTGTCAATCCCTACCAACTGCATCACCCAGCACATTATACCAAGgtaagtagttctgcagttctagaggtttgcgcatactacataagtatgaa Alignment from Pairagon GGAAATCCACACATATCTGGGCGCATGAC------CTCCCGGGCCTGTTTGAGCAGCGAAGGCTGCAGCACCAGGCACCCCTCTCCATCCCTACCAACCGCATCACTCAGCGCATCATCCCCAG acatgttcccaagggtcttctgggctatctaatctctccttttttgacagGGAGGTTCACGCACATCTGGGCACATGACTTACCTCTACCAGGTCTGTTTGAGCAGCGTAGACTACAGCATCAGGCACCTCTGTCAATCCCTACCAACTGCATCACCCAGCACATTATACCAAGgtaagtagttctgcagttctagaggtttgcgcatactacataagtatgaa Alignment from Exonerate_protein2genome GGAAATCCACACATATCTGGGCGCATGAC------CTCCCGGGCCTGTTTGAGCAGCGAAGGCTGCAGCACCAGGCACCCCTCTCCATCCCTACCAACCGCATCACTCAGCGCATCATCCCCAG acatgttcccaagggtcttctgggctatctaatctctccttttttgacagGGAGGTTCACGCACATCTGGGCACATGACTTACCTCTACCAGGTCTGTTTGAGCAGCGTAGACTACAGCATCAGGCACCTCTGTCAATCCCTACCAACTGCATCACCCAGCACATTATACCAAGgtaagtagttctgcagttctagaggtttgcgcatactacataagtatgaa Alignment from Exonerate_coding2genome GGAAATCCACACATATCTGGGCGCATGAC------CTCCCGGGCCTGTTTGAGCAGCGAAGGCTGCAGCACCAGGCACCCCTCTCCATCCCTACCAACCGCATCACTCAGCGCATCATCCCCAG acatgttcccaagggtcttctgggctatctaatctctccttttttgacagGGAGGTTCACGCACATCTGGGCACATGACTTACCTCTACCAGGTCTGTTTGAGCAGCGTAGACTACAGCATCAGGCACCTCTGTCAATCCCTACCAACTGCATCACCCAGCACATTATACCAAGgtaagtagttctgcagttctagaggtttgcgcatactacataagtatgaa Alignment from GeneWise GGAAATCCACACATATCTGGGCGCATGACCTCCCG------GGCCTGTTTGAGCAGCGAAGGCTGCAGCACCAGGCACCCCTCTCCATCCCTACCAACCGCATCACTCAGCGCATCATCCCCAG acatgttcccaagggtcttctgggctatctaatctctccttttttgacagGGAGGTTCACGCACATCTGGGCACATGACTTACCTCTACCAGGTCTGTTTGAGCAGCGTAGACTACAGCATCAGGCACCTCTGTCAATCCCTACCAACTGCATCACCCAGCACATTATACCAAGgtaagtagttctgcagttctagaggtttgcgcatactacataagtatgaa #### Map4k2_ID1646_25 --> 1 - 1 Original Alignment gCGCTTTGCCCTGTCCACCAAGATTCCTGACACCAAAGGCTGCTTGCAGTGCCGTGTGg tatttgtaccttgcatggatggcatcaacttctctctgcttgatgcccaggCGTTTTGCCTTGTCCACCAAGATTCCTGACACCAAAGGCTGCCTACAGTGCTGTGTGggtataattggcgggagtgccatgaagctggccccacctatgtgttctgtt Alignment from CESAR gCGCTTTGCCCTGTCCACCAAGATTCCTGACACCAAAGGCTGCTTGCAGTGCCGTGTGg tatttgtaccttgcatggatggcatcaacttctctctgcttgatgcccaggCGTTTTGCCTTGTCCACCAAGATTCCTGACACCAAAGGCTGCCTACAGTGCTGTGTGggtataattggcgggagtgccatgaagctggccccaccccctgagcaatac Alignment from Spaln_aa2Genome GCGCTTTGCCCTGTCCACCAAGATTCCTGACACCAAAGGCTGCTTGCAGTGCCGTGTGG tatttgtaccttgcatggatggcatcaacttctctctgcttgatgcccagGCGTTTTGCCTTGTCCACCAAGATTCCTGACACCAAAGGCTGCCTACAGTGCTGTGTGGgtataattggcgggagtgccatgaagctggccccacctatgtgttctgtt Alignment from Spaln_nt2Genome GCGCTTTGCCCTGTCCACCAAGATTCCTGACACCAAAGGCTGCTTGCAGTGCCGTGTGG tatttgtaccttgcatggatggcatcaacttctctctgcttgatgcccagGCGTTTTGCCTTGTCCACCAAGATTCCTGACACCAAAGGCTGCCTACAGTGCTGTGTGGgtataattggcgggagtgccatgaagctggccccacctatgtgttctgtt Alignment from Pairagon GCGCTTTGCCCTGTCCACCAAGATTCCTGACACCAAAGGCTGCTTGCAGTGCCGTGTG--------------------------------------------------- tatttgtaccttgcatggatggcatcaacttctctctgcttgatgcccagGCGTTTTGCCTTGTCCACCAAGATTCCTGACACCAAAGGCTGCCTACAGTGCTGTGTGGGTATAATTGGCGGGAGTGCCATGAAGCTGGCCCCACCTATGTGTTCTGTT Alignment from Exonerate_protein2genome GCGCTTTGCCCTGTCCACCAAGATTCCTGACACCAAAGGCTGCTTGCAGTGCCGTGTGG tatttgtaccttgcatggatggcatcaacttctctctgcttgatgcccagGCGTTTTGCCTTGTCCACCAAGATTCCTGACACCAAAGGCTGCCTACAGTGCTGTGTGGgtataattggcgggagtgccatgaagctggccccacctatgtgttctgtt Alignment from Exonerate_coding2genome GCGCTTTGCCCTGTCCACCAAGATTCCTGACACCAAAGGCTGCTTGCAGTGCCGTGTGG tatttgtaccttgcatggatggcatcaacttctctctgcttgatgcccagGCGTTTTGCCTTGTCCACCAAGATTCCTGACACCAAAGGCTGCCTACAGTGCTGTGTGGgtataattggcgggagtgccatgaagctggccccacctatgtgttctgtt Alignment from GeneWise -CGCTTTGCCCTGTCCACCAAGATTCCTGACACCAAAGGCTGCTTGCAGTGCCGTGTGG tatttgtaccttgcatggatggcatcaacttctctctgcttgatgcccagGCGTTTTGCCTTGTCCACCAAGATTCCTGACACCAAAGGCTGCCTACAGTGCTGTGTGGgtataattggcgggagtgccatgaagctggccccacctatgtgttctgtt #### March5_ID7302_4 --> 0 - 1 Original Alignment GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAg tcatctatgaaggtgtgcaaggggctttcaatcaccctgtcctctctcagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCTTCTGACTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAggtgagtcattggtggtattgcattcaaggcatacatagctaggattaatt Alignment from CESAR GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAg tcatctatgaaggtgtgcaaggggctttcaatcaccctgtcctctctcagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCTTCTGACTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAggtgagtcattggtggtattgcattcaaggcatacatagctaggattaatt Alignment from Spaln_aa2Genome GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG tcatctatgaaggtgtgcaaggggctttcaatcaccctgtcctctctcagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCTTCTGACTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtgagtcattggtggtattgcattcaaggcatacatagctaggattaatt Alignment from Spaln_nt2Genome GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG tcatctatgaaggtgtgcaaggggctttcaatcaccctgtcctctctcagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCTTCTGACTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtgagtcattggtggtattgcattcaaggcatacatagctaggattaatt Alignment from Pairagon GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG tcatctatgaaggtgtgcaaggggctttcaatcaccctgtcctctctcagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCTTCTGACTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtgagtcattggtggtattgcattcaaggcatacatagctaggattaatt Alignment from Exonerate_protein2genome GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG tcatctatgaaggtgtgcaaggggctttcaatcaccctgtcctctctcagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCTTCTGACTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtgagtcattggtggtattgcattcaaggcatacatagctaggattaatt Alignment from Exonerate_coding2genome GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG tcatctatgaaggtgtgcaaggggctttcaatcaccctgtcctctctcagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCTTCTGACTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtgagtcattggtggtattgcattcaaggcatacatagctaggattaatt Alignment from GeneWise GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG tcatctatgaaggtgtgcaaggggctttcaatcaccctgtcctctctcagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCTTCTGACTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtgagtcattggtggtattgcattcaaggcatacatagctaggattaatt #### Mark2_ID2115_6 --> 2 - 0 Original Alignment gaGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG atgacacaacccctacccttgactctgatctcctcttcttacctcactaggtGAGCTGTTTGATTATCTAGTGGCTCATGGCAGGATGAAAGAAAAAGAGGCTCGAGCCAAATTCCACCAGgtgatcgtgttgctaaatttgcaagtttggcaccagcatgagaatatgga Alignment from CESAR gaGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG atgacacaacccctacccttgactctgatctcctcttcttacctcactaggtGAGCTGTTTGATTATCTAGTGGCTCATGGCAGGATGAAAGAAAAAGAGGCTCGAGCCAAATTCCACCAGgtgatcgtgttgctaaatttgcaagtttggcaccagcatgagaatatgga Alignment from Spaln_aa2Genome GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG atgacacaacccctacccttgactctgatctcctcttcttacctcactagGTGAGCTGTTTGATTATCTAGTGGCTCATGGCAGGATGAAAGAAAAAGAGGCTCGAGCCAAATTCCACCAGgtgatcgtgttgctaaatttgcaagtttggcaccagcatgagaatatgga Alignment from Spaln_nt2Genome GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG atgacacaacccctacccttgactctgatctcctcttcttacctcactagGTGAGCTGTTTGATTATCTAGTGGCTCATGGCAGGATGAAAGAAAAAGAGGCTCGAGCCAAATTCCACCAGgtgatcgtgttgctaaatttgcaagtttggcaccagcatgagaatatgga Alignment from Pairagon GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG atgacacaacccctacccttgactctgatctcctcttcttacctcactagGTGAGCTGTTTGATTATCTAGTGGCTCATGGCAGGATGAAAGAAAAAGAGGCTCGAGCCAAATTCCACCAGgtgatcgtgttgctaaatttgcaagtttggcaccagcatgagaatatgga Alignment from Exonerate_protein2genome GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG atgacacaacccctacccttgactctgatctcctcttcttacctcactagGTGAGCTGTTTGATTATCTAGTGGCTCATGGCAGGATGAAAGAAAAAGAGGCTCGAGCCAAATTCCACCAGgtgatcgtgttgctaaatttgcaagtttggcaccagcatgagaatatgga Alignment from Exonerate_coding2genome GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG atgacacaacccctacccttgactctgatctcctcttcttacctcactagGTGAGCTGTTTGATTATCTAGTGGCTCATGGCAGGATGAAAGAAAAAGAGGCTCGAGCCAAATTCCACCAGgtgatcgtgttgctaaatttgcaagtttggcaccagcatgagaatatgga Alignment from GeneWise GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG atgacacaacccctacccttgactctgatctcctcttcttacctcactagGTGAGCTGTTTGATTATCTAGTGGCTCATGGCAGGATGAAAGAAAAAGAGGCTCGAGCCAAATTCCACCAGgtgatcgtgttgctaaatttgcaagtttggcaccagcatgagaatatgga #### Mgea5_ID9593_8 --> 2 - 1 Original Alignment ctGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCa cctcaggaggccccaggaggggggatcctatttcccccacctggttgaagctGACAGTGAGGATAGTACGGTTTCAATACACATAAAGCTGGAGAATGAGGATGGTGACAAAGACATTGACACTGATGTCCTGTACAGTCCACAGATGGCCTTTAAGTTAGCCTTAACTGAGTGGTTGCAAGAGATTGGTGTCCCTCACCAATACAGCagtatgttaagctgtgagcctcccaggctacaggatttgtataagtccttc Alignment from CESAR ctGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCa cctcaggaggccccaggaggggggatcctatttcccccacctggttgaagctGACAGTGAGGATAGTACGGTTTCAATACACATAAAGCTGGAGAATGAGGATGGTGACAAAGACATTGACACTGATGTCCTGTACAGTCCACAGATGGCCTTTAAGTTAGCCTTAACTGAGTGGTTGCAAGAGATTGGTGTCCCTCACCAATACAGCagtatgttaagctgtgagcctcccaggctacaggatttgtataagtccttc Alignment from Spaln_aa2Genome CTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCA cctcaggaggccccaggaggggggatcctatttcccccacctggttgaagCTGACAGTGAGGATAGTACGGTTTCAATACACATAAAGCTGGAGAATGAGGATGGTGACAAAGACATTGACACTGATGTCCTGTACAGTCCACAGATGGCCTTTAAGTTAGCCTTAACTGAGTGGTTGCAAGAGATTGGTGTCCCTCACCAATACAGCAgtatgttaagctgtgagcctcccaggctacaggatttgtataagtccttc Alignment from Spaln_nt2Genome CTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCA cctcaggaggccccaggaggggggatcctatttcccccacctggttgaagCTGACAGTGAGGATAGTACGGTTTCAATACACATAAAGCTGGAGAATGAGGATGGTGACAAAGACATTGACACTGATGTCCTGTACAGTCCACAGATGGCCTTTAAGTTAGCCTTAACTGAGTGGTTGCAAGAGATTGGTGTCCCTCACCAATACAGCAgtatgttaagctgtgagcctcccaggctacaggatttgtataagtccttc Alignment from Pairagon CTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCA cctcaggaggccccaggaggggggatcctatttcccccacctggttgaagCTGACAGTGAGGATAGTACGGTTTCAATACACATAAAGCTGGAGAATGAGGATGGTGACAAAGACATTGACACTGATGTCCTGTACAGTCCACAGATGGCCTTTAAGTTAGCCTTAACTGAGTGGTTGCAAGAGATTGGTGTCCCTCACCAATACAGCAgtatgttaagctgtgagcctcccaggctacaggatttgtataagtccttc Alignment from Exonerate_protein2genome CTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCA cctcaggaggccccaggaggggggatcctatttcccccacctggttgaagCTGACAGTGAGGATAGTACGGTTTCAATACACATAAAGCTGGAGAATGAGGATGGTGACAAAGACATTGACACTGATGTCCTGTACAGTCCACAGATGGCCTTTAAGTTAGCCTTAACTGAGTGGTTGCAAGAGATTGGTGTCCCTCACCAATACAGCAgtatgttaagctgtgagcctcccaggctacaggatttgtataagtccttc Alignment from Exonerate_coding2genome CTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCA cctcaggaggccccaggaggggggatcctatttcccccacctggttgaagCTGACAGTGAGGATAGTACGGTTTCAATACACATAAAGCTGGAGAATGAGGATGGTGACAAAGACATTGACACTGATGTCCTGTACAGTCCACAGATGGCCTTTAAGTTAGCCTTAACTGAGTGGTTGCAAGAGATTGGTGTCCCTCACCAATACAGCAgtatgttaagctgtgagcctcccaggctacaggatttgtataagtccttc Alignment from GeneWise CTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCA cctcaggaggccccaggaggggggatcctatttcccccacctggttgaagCTGACAGTGAGGATAGTACGGTTTCAATACACATAAAGCTGGAGAATGAGGATGGTGACAAAGACATTGACACTGATGTCCTGTACAGTCCACAGATGGCCTTTAAGTTAGCCTTAACTGAGTGGTTGCAAGAGATTGGTGTCCCTCACCAATACAGCAgtatgttaagctgtgagcctcccaggctacaggatttgtataagtccttc #### Morn4_ID8389_3 --> 1 - 1 Original Alignment gTATGAGGGGGAGTTTTCCCAGGGCAAGTTCAATGGCGTCGGAGTCTTCATTCGATATGACAACATGACCTTTGAGGGGGAATTTAAAAATGGCAGAGTAGACGGTTTTg tctggccgccccatacactcagcttatttcaactacttttgtccttacagaTATGAGGGTGAGTTTTCCCAAGGCAAGTTCAATGGTCTTGGGGTTTTCATTCGTTATGATAACATGACCTTTGAGGGGGAGTTTAAAAATGGGAAGGTGGATGGCTTTggtgaggtttaactcagtgccatgactattagtttaagtacaatattgatg Alignment from CESAR gTATGAGGGGGAGTTTTCCCAGGGCAAGTTCAATGGCGTCGGAGTCTTCATTCGATATGACAACATGACCTTTGAGGGGGAATTTAAAAATGGCAGAGTAGACGGTTTTg tctggccgccccatacactcagcttatttcaactacttttgtccttacagaTATGAGGGTGAGTTTTCCCAAGGCAAGTTCAATGGTCTTGGGGTTTTCATTCGTTATGATAACATGACCTTTGAGGGGGAGTTTAAAAATGGGAAGGTGGATGGCTTTggtgaggtttaactcagtgccatgactattagtttaagtacaatattgatg Alignment from Spaln_aa2Genome GTATGAGGGGGAGTTTTCCCAGGGCAAGTTCAATGGCGTCGGAGTCTTCATTCGATATGACAACATGACCTTTGAGGGGGAATTTAAAAATGGCAGAGTAGACGGTTTTG tctggccgccccatacactcagcttatttcaactacttttgtccttacagATATGAGGGTGAGTTTTCCCAAGGCAAGTTCAATGGTCTTGGGGTTTTCATTCGTTATGATAACATGACCTTTGAGGGGGAGTTTAAAAATGGGAAGGTGGATGGCTTTGgtgaggtttaactcagtgccatgactattagtttaagtacaatattgatg Alignment from Spaln_nt2Genome GTATGAGGGGGAGTTTTCCCAGGGCAAGTTCAATGGCGTCGGAGTCTTCATTCGATATGACAACATGACCTTTGAGGGGGAATTTAAAAATGGCAGAGTAGACGGTTTTG tctggccgccccatacactcagcttatttcaactacttttgtccttacagATATGAGGGTGAGTTTTCCCAAGGCAAGTTCAATGGTCTTGGGGTTTTCATTCGTTATGATAACATGACCTTTGAGGGGGAGTTTAAAAATGGGAAGGTGGATGGCTTTGgtgaggtttaactcagtgccatgactattagtttaagtacaatattgatg Alignment from Pairagon GTATGAGGGGGAGTTTTCCCAGGGCAAGTTCAATGGCGTCGGAGTCTTCATTCGATATGACAACATGACCTTTGAGGGGGAATTTAAAAATGGCAGAGTAGACGGTTTTG tctggccgccccatacactcagcttatttcaactacttttgtccttacagATATGAGGGTGAGTTTTCCCAAGGCAAGTTCAATGGTCTTGGGGTTTTCATTCGTTATGATAACATGACCTTTGAGGGGGAGTTTAAAAATGGGAAGGTGGATGGCTTTGgtgaggtttaactcagtgccatgactattagtttaagtacaatattgatg Alignment from Exonerate_protein2genome GTATGAGGGGGAGTTTTCCCAGGGCAAGTTCAATGGCGTCGGAGTCTTCATTCGATATGACAACATGACCTTTGAGGGGGAATTTAAAAATGGCAGAGTAGACGGTTTTG tctggccgccccatacactcagcttatttcaactacttttgtccttacagATATGAGGGTGAGTTTTCCCAAGGCAAGTTCAATGGTCTTGGGGTTTTCATTCGTTATGATAACATGACCTTTGAGGGGGAGTTTAAAAATGGGAAGGTGGATGGCTTTGgtgaggtttaactcagtgccatgactattagtttaagtacaatattgatg Alignment from Exonerate_coding2genome GTATGAGGGGGAGTTTTCCCAGGGCAAGTTCAATGGCGTCGGAGTCTTCATTCGATATGACAACATGACCTTTGAGGGGGAATTTAAAAATGGCAGAGTAGACGGTTTTG tctggccgccccatacactcagcttatttcaactacttttgtccttacagATATGAGGGTGAGTTTTCCCAAGGCAAGTTCAATGGTCTTGGGGTTTTCATTCGTTATGATAACATGACCTTTGAGGGGGAGTTTAAAAATGGGAAGGTGGATGGCTTTGgtgaggtttaactcagtgccatgactattagtttaagtacaatattgatg Alignment from GeneWise GTATGAGGGGGAGTTTTCCCAGGGCAAGTTCAATGGCGTCGGAGTCTTCATTCGATATGACAACATGACCTTTGAGGGGGAATTTAAAAATGGCAGAGTAGACGGTTTTG tctggccgccccatacactcagcttatttcaactacttttgtccttacagATATGAGGGTGAGTTTTCCCAAGGCAAGTTCAATGGTCTTGGGGTTTTCATTCGTTATGATAACATGACCTTTGAGGGGGAGTTTAAAAATGGGAAGGTGGATGGCTTTGgtgaggtttaactcagtgccatgactattagtttaagtacaatattgatg #### Ms4a10_ID3082_5 --> 0 - 0 Original Alignment ACCTACATCCAAAGGCTAGAGCTGACCCTGTTCTGCTTCACCTTCCTGGAGATCTTCCTGTCGGGGTCCACAGCCATCACAGCCTATAGGATGAAACGCCTGCAAGCAGAG gactaagggaaagatgccaattaaggggtcaactgcaccttccctttcagACTTATATCCAGACATTAGAGTTGACCCTCTTATGTTTTACATTCCTAGAAATTTTCCTCTCAGGGTCCACTGCAATTACAGCCTATAGGATGAAACGATTGCAAGCAGAAgtgagtgtgttctttatgggactacaactgaaatgctaataatcccctta Alignment from CESAR ACCTACATCCAAAGGCTAGAGCTGACCCTGTTCTGCTTCACCTTCCTGGAGATCTTCCTGTCGGGGTCCACAGCCATCACAGCCTATAGGATGAAACGCCTGCAAGCAGAG gactaagggaaagatgccaattaaggggtcaactgcaccttccctttcagACTTATATCCAGACATTAGAGTTGACCCTCTTATGTTTTACATTCCTAGAAATTTTCCTCTCAGGGTCCACTGCAATTACAGCCTATAGGATGAAACGATTGCAAGCAGAAgtgagtgtgttctttatgggactacaactgaaatgctaataatcccctta Alignment from Spaln_aa2Genome ACCTACATCCAAAGGCTAGAGCTGACCCTGTTCTGCTTCACCTTCCTGGAGATCTTCCTGTCGGGGTCCACAGCCATCACAGCCTATAGGATGAAACGCCTGCAAGCAGAG gactaagggaaagatgccaattaaggggtcaactgcaccttccctttcagACTTATATCCAGACATTAGAGTTGACCCTCTTATGTTTTACATTCCTAGAAATTTTCCTCTCAGGGTCCACTGCAATTACAGCCTATAGGATGAAACGATTGCAAGCAGAAgtgagtgtgttctttatgggactacaactgaaatgctaataatcccctta Alignment from Spaln_nt2Genome ACCTACATCCAAAGGCTAGAGCTGACCCTGTTCTGCTTCACCTTCCTGGAGATCTTCCTGTCGGGGTCCACAGCCATCACAGCCTATAGGATGAAACGCCTGCAAGCAGAG gactaagggaaagatgccaattaaggggtcaactgcaccttccctttcagACTTATATCCAGACATTAGAGTTGACCCTCTTATGTTTTACATTCCTAGAAATTTTCCTCTCAGGGTCCACTGCAATTACAGCCTATAGGATGAAACGATTGCAAGCAGAAgtgagtgtgttctttatgggactacaactgaaatgctaataatcccctta Alignment from Pairagon ACCTACATCCAAAGGCTAGAGCTGACCCTGTTCTGCTTCACCTTCCTGGAGATCTTCCTGTCGGGGTCCACAGCCATCACAGCCTATAGGATGAAACGCCTGCAAGCAGAG gactaagggaaagatgccaattaaggggtcaactgcaccttccctttcagACTTATATCCAGACATTAGAGTTGACCCTCTTATGTTTTACATTCCTAGAAATTTTCCTCTCAGGGTCCACTGCAATTACAGCCTATAGGATGAAACGATTGCAAGCAGAAgtgagtgtgttctttatgggactacaactgaaatgctaataatcccctta Alignment from Exonerate_protein2genome ACCTACATCCAAAGGCTAGAGCTGACCCTGTTCTGCTTCACCTTCCTGGAGATCTTCCTGTCGGGGTCCACAGCCATCACAGCCTATAGGATGAAACGCCTGCAAGCAGAG gactaagggaaagatgccaattaaggggtcaactgcaccttccctttcagACTTATATCCAGACATTAGAGTTGACCCTCTTATGTTTTACATTCCTAGAAATTTTCCTCTCAGGGTCCACTGCAATTACAGCCTATAGGATGAAACGATTGCAAGCAGAAgtgagtgtgttctttatgggactacaactgaaatgctaataatcccctta Alignment from Exonerate_coding2genome ACCTACATCCAAAGGCTAGAGCTGACCCTGTTCTGCTTCACCTTCCTGGAGATCTTCCTGTCGGGGTCCACAGCCATCACAGCCTATAGGATGAAACGCCTGCAAGCAGAG gactaagggaaagatgccaattaaggggtcaactgcaccttccctttcagACTTATATCCAGACATTAGAGTTGACCCTCTTATGTTTTACATTCCTAGAAATTTTCCTCTCAGGGTCCACTGCAATTACAGCCTATAGGATGAAACGATTGCAAGCAGAAgtgagtgtgttctttatgggactacaactgaaatgctaataatcccctta Alignment from GeneWise ACCTACATCCAAAGGCTAGAGCTGACCCTGTTCTGCTTCACCTTCCTGGAGATCTTCCTGTCGGGGTCCACAGCCATCACAGCCTATAGGATGAAACGCCTGCAAGCAGAG gactaagggaaagatgccaattaaggggtcaactgcaccttccctttcagACTTATATCCAGACATTAGAGTTGACCCTCTTATGTTTTACATTCCTAGAAATTTTCCTCTCAGGGTCCACTGCAATTACAGCCTATAGGATGAAACGATTGCAAGCAGAAgtgagtgtgttctttatgggactacaactgaaatgctaataatcccctta #### Ms4a13_ID3144_3 --> 0 - 0 Original Alignment TTTGTCATTTCAGGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGACATATG ctaagtgagattctactttatctgttttaatgtgttttgtgcttttccagTTTGTAATTCCTGGGGCGTTCACTGCAAAAGCGGCAAAATATCAAAGTAGACACATGgtaaattaggatatccgggtcaatgcgggtcaatatctgcatagagctgg Alignment from CESAR TTTGTCATTTCAGGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGACATATG ctaagtgagattctactttatctgttttaatgtgttttgtgcttttccagTTTGTAATTCCTGGGGCGTTCACTGCAAAAGCGGCAAAATATCAAAGTAGACACATGgtaaattaggatatccgggtcaatgcgggtcaatatctgcatagagctgg Alignment from Spaln_aa2Genome TTTGTCATTTCAGGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGACATATG ctaagtgagattctactttatctgttttaatgtgttttgtgcttttccagTTTGTAATTCCTGGGGCGTTCACTGCAAAAGCGGCAAAATATCAAAGTAGACACATGgtaaattaggatatccgggtcaatgcgggtcaatatctgcatagagctgg Alignment from Spaln_nt2Genome TTTGTCATTTCAGGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGACATATG ctaagtgagattctactttatctgttttaatgtgttttgtgcttttccagTTTGTAATTCCTGGGGCGTTCACTGCAAAAGCGGCAAAATATCAAAGTAGACACATGgtaaattaggatatccgggtcaatgcgggtcaatatctgcatagagctgg Alignment from Pairagon TTTGTCATTTCAGGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGACATATG ctaagtgagattctactttatctgttttaatgtgttttgtgcttttccagTTTGTAATTCCTGGGGCGTTCACTGCAAAAGCGGCAAAATATCAAAGTAGACACATGgtaaattaggatatccgggtcaatgcgggtcaatatctgcatagagctgg Alignment from Exonerate_protein2genome TTTGTCATTTCAGGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGACATATG ctaagtgagattctactttatctgttttaatgtgttttgtgcttttccagTTTGTAATTCCTGGGGCGTTCACTGCAAAAGCGGCAAAATATCAAAGTAGACACATGgtaaattaggatatccgggtcaatgcgggtcaatatctgcatagagctgg Alignment from Exonerate_coding2genome TTTGTCATTTCAGGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGACATATG ctaagtgagattctactttatctgttttaatgtgttttgtgcttttccagTTTGTAATTCCTGGGGCGTTCACTGCAAAAGCGGCAAAATATCAAAGTAGACACATGgtaaattaggatatccgggtcaatgcgggtcaatatctgcatagagctgg Alignment from GeneWise TTTGTCATTTCAGGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGACATATG ctaagtgagattctactttatctgttttaatgtgttttgtgcttttccagTTTGTAATTCCTGGGGCGTTCACTGCAAAAGCGGCAAAATATCAAAGTAGACACATGgtaaattaggatatccgggtcaatgcgggtcaatatctgcatagagctgg #### Ms4a13_ID3145_2 --> 0 - 0 Original Alignment GTTATCCAGATTATGATTGGAATCTATCATGTACTCATGTGGTATTTCCTATTGCTGTTGTATATGGGACAAATTAAAGGAGTATTTGGAACATATGAACCTGTAACTTACAAAATGGGAACTTCTTTATGGGGATTTGCT tcttagaccttcaacataatatttagtatgcttttctcttggggctccagGTTGTCCAGATTATGATTGGTATTTATCATGTCCTCATGTGGTATATCGTGTTGCCATTGTATATGGGACAAATTAAGGGAGTCTTTGGAATGTATGAACCTATAACGTACAAAATGGGAACTTCT---TGGGGATTTGCTgtaagttaatatggctgtgagttgtgatatgtcttccttagtaatggacc Alignment from CESAR GTTATCCAGATTATGATTGGAATCTATCATGTACTCATGTGGTATTTCCTATTGCTGTTGTATATGGGACAAATTAAAGGAGTATTTGGAACATATGAACCTGTAACTTACAAAATGGGAACTTCTTTATGGGGATTTGCT tcttagaccttcaacataatatttagtatgcttttctcttggggctccagGTTGTCCAGATTATGATTGGTATTTATCATGTCCTCATGTGGTATATCGTGTTGCCATTGTATATGGGACAAATTAAGGGAGTCTTTGGAATGTATGAACCTATAACGTACAAAATGGGAACTTCT---TGGGGATTTGCTgtaagttaatatggctgtgagttgtgatatgtcttccttagtaatggacc Alignment from Spaln_aa2Genome GTTATCCAGATTATGATTGGAATCTATCATGTACTCATGTGGTATTTCCTATTGCTGTTGTATATGGGACAAATTAAAGGAGTATTTGGAACATATGAACCTGTAACTTACAAAATGGGAACTTCTTTATGGGGATTTGCT tcttagaccttcaacataatatttagtatgcttttctcttggggctccagGTTGTCCAGATTATGATTGGTATTTATCATGTCCTCATGTGGTATATCGTGTTGCCATTGTATATGGGACAAATTAAGGGAGTCTTTGGAATGTATGAACCTATAACGTACAAAATGGGAACTTCT---TGGGGATTTGCTgtaagttaatatggctgtgagttgtgatatgtcttccttagtaatggacc Alignment from Spaln_nt2Genome GTTATCCAGATTATGATTGGAATCTATCATGTACTCATGTGGTATTTCCTATTGCTGTTGTATATGGGACAAATTAAAGGAGTATTTGGAACATATGAACCTGTAACTTACAAAATGGGAACTTCTTTATGGGGATTTGCT tcttagaccttcaacataatatttagtatgcttttctcttggggctccagGTTGTCCAGATTATGATTGGTATTTATCATGTCCTCATGTGGTATATCGTGTTGCCATTGTATATGGGACAAATTAAGGGAGTCTTTGGAATGTATGAACCTATAACGTACAAAATGGGAACTTCT---TGGGGATTTGCTgtaagttaatatggctgtgagttgtgatatgtcttccttagtaatggacc Alignment from Pairagon GTTATCCAGATTATGATTGGAATCTATCATGTACTCATGTGGTATTTCCTATTGCTGTTGTATATGGGACAAATTAAAGGAGTATTTGGAACATATGAACCTGTAACTTACAAAATGGGAACTTCTTTATGGGGATTTGCT tcttagaccttcaacataatatttagtatgcttttctcttggggctccagGTTGTCCAGATTATGATTGGTATTTATCATGTCCTCATGTGGTATATCGTGTTGCCATTGTATATGGGACAAATTAAGGGAGTCTTTGGAATGTATGAACCTATAACGTACAAAATGGGAACTTCT---TGGGGATTTGCTgtaagttaatatggctgtgagttgtgatatgtcttccttagtaatggacc Alignment from Exonerate_protein2genome GTTATCCAGATTATGATTGGAATCTATCATGTACTCATGTGGTATTTCCTATTGCTGTTGTATATGGGACAAATTAAAGGAGTATTTGGAACATATGAACCTGTAACTTACAAAATGGGAACTTCTTTATGGGGATTTGCT tcttagaccttcaacataatatttagtatgcttttctcttggggctccagGTTGTCCAGATTATGATTGGTATTTATCATGTCCTCATGTGGTATATCGTGTTGCCATTGTATATGGGACAAATTAAGGGAGTCTTTGGAATGTATGAACCTATAACGTACAAAATGGGAACTTCT---TGGGGATTTGCTgtaagttaatatggctgtgagttgtgatatgtcttccttagtaatggacc Alignment from Exonerate_coding2genome GTTATCCAGATTATGATTGGAATCTATCATGTACTCATGTGGTATTTCCTATTGCTGTTGTATATGGGACAAATTAAAGGAGTATTTGGAACATATGAACCTGTAACTTACAAAATGGGAACTTCTTTATGGGGATTTGCT tcttagaccttcaacataatatttagtatgcttttctcttggggctccagGTTGTCCAGATTATGATTGGTATTTATCATGTCCTCATGTGGTATATCGTGTTGCCATTGTATATGGGACAAATTAAGGGAGTCTTTGGAATGTATGAACCTATAACGTACAAAATGGGAACTTCT---TGGGGATTTGCTgtaagttaatatggctgtgagttgtgatatgtcttccttagtaatggacc Alignment from GeneWise GTTATCCAGATTATGATTGGAATCTATCATGTACTCATGTGGTATTTCCTATTGCTGTTGTATATGGGACAAATTAAAGGAGTATTTGGAACATATGAACCTGTAACTTACAAAATGGGAACTTCTTTATGGGGATTTGCT tcttagaccttcaacataatatttagtatgcttttctcttggggctccagGTTGTCCAGATTATGATTGGTATTTATCATGTCCTCATGTGGTATATCGTGTTGCCATTGTATATGGGACAAATTAAGGGAGTCTTTGGAATGTATGAACCTATAACGTACAAAATGGGAACTTCT---TGGGGATTTGCTgtaagttaatatggctgtgagttgtgatatgtcttccttagtaatggacc #### Ms4a1_ID3152_4 --> 0 - 0 Original Alignment GTCAAAGCAAAAGTGATAATGAGCTCTCTAAGCCTCTTTGCTGCCATTTCTGGAATAATTCTTTCAATCATGGACATACTTAACATGACACTTTCTCATTTTTTAAAAATGAGAAGACTGGAGCTTATTCAAACTTCCAAGCCGTATGTTGATATCTACGACTGTGAACCATCTAATTCCTCAGAGAAAAACTCCCCATCTACACAGTACTGTAACAGCATTCAGTCTGTGTTCTTG acagataggcaaattaatggaacttttacaatgaccactcaccccaacagGTAAAAGCAAAAGTAATAATGAGTGCCCCTAGCCTCTTTGCTGCAATTTCTGGAATA---TTCTCAATTATGGACATACTTAACATCACACTTACTCATTTTCTAAAGACAAGACGTCTTGAGCTTGCA---ACTTCCAAGCCTCATGTTGACATCTATGACTGTGAACCCTCTAATTCATCAGAAAAAAACTCCCCATCTACACAGTACAGTAATAGCATCCAATCTGTGTTCTTGgtaaggatcatctaaactaaacacagtagaagtggtcgaatcccctttgg Alignment from CESAR GTCAAAGCAAAAGTGATAATGAGCTCTCTAAGCCTCTTTGCTGCCATTTCTGGAATAATTCTTTCAATCATGGACATACTTAACATGACACTTTCTCATTTTTTAAAAATGAGAAGACTGGAGCTTATTCAAACTTCCAAGCCGTATGTTGATATCTACGACTGTGAACCATCTAATTCCTCAGAGAAAAACTCCCCATCTACACAGTACTGTAACAGCATTCAGTCTGTGTTCTTG acagataggcaaattaatggaacttttacaatgaccactcaccccaacagGTAAAAGCAAAAGTAATAATGAGTGCCCCTAGCCTCTTTGCTGCAATTTCTGGAATA---TTCTCAATTATGGACATACTTAACATCACACTTACTCATTTTCTAAAGACAAGACGTCTTGAGCTT---GCAACTTCCAAGCCTCATGTTGACATCTATGACTGTGAACCCTCTAATTCATCAGAAAAAAACTCCCCATCTACACAGTACAGTAATAGCATCCAATCTGTGTTCTTGgtaaggatcatctaaactaaacacagtagaagtggtcgaatcccctttgg Alignment from Spaln_aa2Genome GTCAAAGCAAAAGTGATAATGAGCTCTCTAAGCCTCTTTGCTGCCATTTCTGGAATAATTCTTTCAATCATGGACATACTTAACATGACACTTTCTCATTTTTTAAAAATGAGAAGACTGGAGCTTATTCAAACTTCCAAGCCGTATGTTGATATCTACGACTGTGAACCATCTAATTCCTCAGAGAAAAACTCCCCATCTACACAGTACTGTAACAGCATTCAGTCTGTGTTCTTG acagataggcaaattaatggaacttttacaatgaccactcaccccaacagGTAAAAGCAAAAGTAATAATGAGTGCCCCTAGCCTCTTTGCTGCAATTTCTGGA---ATATTCTCAATTATGGACATACTTAACATCACACTTACTCATTTTCTAAAGACAAGACGTCTTGAGCTTGCA---ACTTCCAAGCCTCATGTTGACATCTATGACTGTGAACCCTCTAATTCATCAGAAAAAAACTCCCCATCTACACAGTACAGTAATAGCATCCAATCTGTGTTCTTGgtaaggatcatctaaactaaacacagtagaagtggtcgaatcccctttgg Alignment from Spaln_nt2Genome GTCAAAGCAAAAGTGATAATGAGCTCTCTAAGCCTCTTTGCTGCCATTTCTGGAATAATTCTTTCAATCATGGACATACTTAACATGACACTTTCTCATTTTTTAAAAATGAGAAGACTGGAGCTTATTCAAACTTCCAAGCCGTATGTTGATATCTACGACTGTGAACCATCTAATTCCTCAGAGAAAAACTCCCCATCTACACAGTACTGTAACAGCATTCAGTCTGTGTTCTTG acagataggcaaattaatggaacttttacaatgaccactcaccccaacagGTAAAAGCAAAAGTAATAATGAGTGCCCCTAGCCTCTTTGCTGCAATTTCTGGAAT-ATTC--TCAATTATGGACATACTTAACATCACACTTACTCATTTTCTAAAGACAAGACGTCTTGAGC---TTGCAACTTCCAAGCCTCATGTTGACATCTATGACTGTGAACCCTCTAATTCATCAGAAAAAAACTCCCCATCTACACAGTACAGTAATAGCATCCAATCTGTGTTCTTGgtaaggatcatctaaactaaacacagtagaagtggtcgaatcccctttgg Alignment from Pairagon GTCAAAGCAAAAGTGATAATGAGCTCTCTAAGCCTCTTTGCTGCCATTTCTGGAATAATTCTTTCAATCATGGACATACTTAACATGACACTTTCTCATTTTTTAAAAATGAGAAGACTGGAGCTTATTCAAACTTCCAAGCCGTATGTTGATATCTACGACTGTGAACCATCTAATTCCTCAGAGAAAAACTCCCCATCTACACAGTACTGTAACAGCATTCAGTCTGTGTTCTTG acagataggcaaattaatggaacttttacaatgaccactcaccccaacagGTAAAAGCAAAAGTAATAATGAGTGCCCCTAGCCTCTTTGCTGCAATTTCTGGAATA---TTCTCAATTATGGACATACTTAACATCACACTTACTCATTTTCTAAAGACAAGACGTCTTGAGCTTGC---AACTTCCAAGCCTCATGTTGACATCTATGACTGTGAACCCTCTAATTCATCAGAAAAAAACTCCCCATCTACACAGTACAGTAATAGCATCCAATCTGTGTTCTTGgtaaggatcatctaaactaaacacagtagaagtggtcgaatcccctttgg Alignment from Exonerate_protein2genome GTCAAAGCAAAAGTGATAATGAGCTCTCTAAGCCTCTTTGCTGCCATTTCTGGAATAATTCTTTCAATCATGGACATACTTAACATGACACTTTCTCATTTTTTAAAAATGAGAAGACTGGAGCTTATTCAAACTTCCAAGCCGTATGTTGATATCTACGACTGTGAACCATCTAATTCCTCAGAGAAAAACTCCCCATCTACACAGTACTGTAACAGCATTCAGTCTGTGTTCTTG acagataggcaaattaatggaacttttacaatgaccactcaccccaacagGTAAAAGCAAAAGTAATAATGAGTGCCCCTAGCCTCTTTGCTGCAATTTCTGGA---ATATTCTCAATTATGGACATACTTAACATCACACTTACTCATTTTCTAAAGACAAGACGTCTTGAGCTT---GCAACTTCCAAGCCTCATGTTGACATCTATGACTGTGAACCCTCTAATTCATCAGAAAAAAACTCCCCATCTACACAGTACAGTAATAGCATCCAATCTGTGTTCTTGgtaaggatcatctaaactaaacacagtagaagtggtcgaatcccctttgg Alignment from Exonerate_coding2genome GTCAAAGCAAAAGTGATAATGAGCTCTCTAAGCCTCTTTGCTGCCATTTCTGGAATAATTCTTTCAATCATGGACATACTTAACATGACACTTTCTCATTTTTTAAAAATGAGAAGACTGGAGCTTATTCAAACTTCCAAGCCGTATGTTGATATCTACGACTGTGAACCATCTAATTCCTCAGAGAAAAACTCCCCATCTACACAGTACTGTAACAGCATTCAGTCTGTGTTCTTG acagataggcaaattaatggaacttttacaatgaccactcaccccaacagGTAAAAGCAAAAGTAATAATGAGTGCCCCTAGCCTCTTTGCTGCAATTTCTGGA---ATATTCTCAATTATGGACATACTTAACATCACACTTACTCATTTTCTAAAGACAAGACGTCTTGAGCTT---GCAACTTCCAAGCCTCATGTTGACATCTATGACTGTGAACCCTCTAATTCATCAGAAAAAAACTCCCCATCTACACAGTACAGTAATAGCATCCAATCTGTGTTCTTGgtaaggatcatctaaactaaacacagtagaagtggtcgaatcccctttgg Alignment from GeneWise GTCAAAGCAAAAGTGATAATGAGCTCTCTAAGCCTCTTTGCTGCCATTTCTGGAATAATTCTTTCAATCATGGACATACTTAACATGACACTTTCTCATTTTTTAAAAATGAGAAGACTGGAGCTTATTCAAACTTCCAAGCCGTATGTTGATATCTACGACTGTGAACCATCTAATTCCTCAGAGAAAAACTCCCCATCTACACAGTACTGTAACAGCATTCAGTCTGTGTTCTTG acagataggcaaattaatggaacttttacaatgaccactcaccccaacagGTAAAAGCAAAAGTAATAATGAGTGCCCCTAGCCTCTTTGCTGCAATTTCTGGAATATTC---TCAATTATGGACATACTTAACATCACACTTACTCATTTTCTAAAGACAAGACGTCTTGAGCTTGCA---ACTTCCAAGCCTCATGTTGACATCTATGACTGTGAACCCTCTAATTCATCAGAAAAAAACTCCCCATCTACACAGTACAGTAATAGCATCCAATCTGTGTTCTTGgtaaggatcatctaaactaaacacagtagaagtggtcgaatcccctttgg #### Ms4a1_ID3154_2 --> 0 - 0 Original Alignment GCTGTCCAA------ATCATGAATGGCCTCTTCCATATTACC---CTGGGGGGACTGCTGATGATCCCC------ACAGGGGTCTTCGCACCCATCTGTTTGAGTGTATGGTACCCTCTCTGGGGAGGCATTATG gcatggtgcctttgacctccacctagcatttgctctgtgaccttcgtcagGCTATCCAGATCAAGCTCAAGCAGGGTCTCTTCCCTATTACAACCTTGGGAGGGTTACTGATGATTCCTGCAGGGGCAGGGGTTTTTGCCCCAATTCGTTTAAGTGTGTGGTACCCCCCATGGGGTAGCATTATGgtaaggagctataaacaatcattattaggaggaggaagtggtactgatag Alignment from CESAR GCTGTCCAAATCATG------AATGGCCTCTTCCATATT---ACCCTGGGGGGACTGCTGATGATCCCCACA------GGGGTCTTCGCACCCATCTGTTTGAGTGTATGGTACCCTCTCTGGGGAGGCATTATG gcatggtgcctttgacctccacctagcatttgctctgtgaccttcgtcagGCTATCCAGATCAAGCTCAAGCAGGGTCTCTTCCCTATTACAACCTTGGGAGGGTTACTGATGATTCCTGCAGGGGCAGGGGTTTTTGCCCCAATTCGTTTAAGTGTGTGGTACCCCCCATGGGGTAGCATTATGgtaaggagctataaacaatcattattaggaggaggaagtggtactgatag Alignment from Spaln_aa2Genome GCTGTCCAAATC------ATGAATGGCCTCTTCCATATT---ACCCTGGGGGGACTGCTGATGATCCCCACA------GGGGTCTTCGCACCCATCTGTTTGAGTGTATGGTACCCTCTCTGGGGAGGCATTATG gcatggtgcctttgacctccacctagcatttgctctgtgaccttcgtcagGCTATCCAGATCAAGCTCAAGCAGGGTCTCTTCCCTATTACAACCTTGGGAGGGTTACTGATGATTCCTGCAGGGGCAGGGGTTTTTGCCCCAATTCGTTTAAGTGTGTGGTACCCCCCATGGGGTAGCATTATGgtaaggagctataaacaatcattattaggaggaggaagtggtactgatag Alignment from Spaln_nt2Genome GCTGTCCAAATCATGA------ATGGCCTCTTCCATATTAC---CCTGGGGGGACTGCTGATGATCCC--CA----CAGGGGTCTTCGCACCCATCTGTTTGAGTGTATGGTACCCTCTCTGGGGAGGCATTATG gcatggtgcctttgacctccacctagcatttgctctgtgaccttcgtcagGCTATCCAGATCAAGCTCAAGCAGGGTCTCTTCCCTATTACAACCTTGGGAGGGTTACTGATGATTCCTGCAGGGGCAGGGGTTTTTGCCCCAATTCGTTTAAGTGTGTGGTACCCCCCATGGGGTAGCATTATGgtaaggagctataaacaatcattattaggaggaggaagtggtactgatag Alignment from Pairagon GCTGTCCAAA------TCATGAATGGCCTCTTCCATATT---ACCCTGGGGGGACTGCTGATGATCCCC------ACAGGGGTCTTCGCACCCATCTGTTTGAGTGTATGGTACCCTCTCTGGGGAGGCATTATG gcatggtgcctttgacctccacctagcatttgctctgtgaccttcgtcagGCTATCCAGATCAAGCTCAAGCAGGGTCTCTTCCCTATTACAACCTTGGGAGGGTTACTGATGATTCCTGCAGGGGCAGGGGTTTTTGCCCCAATTCGTTTAAGTGTGTGGTACCCCCCATGGGGTAGCATTATGgtaaggagctataaacaatcattattaggaggaggaagtggtactgatag Alignment from Exonerate_protein2genome TTGGGGGCTGTCCAAATCATGAATGGCCTCTTCCATATT---ACCCTGGGGGGACTGCTGATGATCCCC------ACAGGGGTCTTCGCACCCATCTGTTTGAGTGTATGGTACCCTCTCTGGGGAGGCATTATG gcatggtgcctttgacctccacctagcatttgctctgtgaccttcgtcagGCTATCCAGATCAAGCTCAAGCAGGGTCTCTTCCCTATTACAACCTTGGGAGGGTTACTGATGATTCCTGCAGGGGCAGGGGTTTTTGCCCCAATTCGTTTAAGTGTGTGGTACCCCCCATGGGGTAGCATTATGgtaaggagctataaacaatcattattaggaggaggaagtggtactgatag Alignment from Exonerate_coding2genome TTGGGGGCTGTCCAAATCATGAATGGCCTCTTCCATATT---ACCCTGGGGGGACTGCTGATGATCCCC------ACAGGGGTCTTCGCACCCATCTGTTTGAGTGTATGGTACCCTCTCTGGGGAGGCATTATG gcatggtgcctttgacctccacctagcatttgctctgtgaccttcgtcagGCTATCCAGATCAAGCTCAAGCAGGGTCTCTTCCCTATTACAACCTTGGGAGGGTTACTGATGATTCCTGCAGGGGCAGGGGTTTTTGCCCCAATTCGTTTAAGTGTGTGGTACCCCCCATGGGGTAGCATTATGgtaaggagctataaacaatcattattaggaggaggaagtggtactgatag Alignment from GeneWise GCTGTCCAAATCATG------AATGGCCTCTTCCATATTACC---CTGGGGGGACTGCTGATGATCCCCACAGGG------GTCTTCGCACCCATCTGTTTGAGTGTATGGTACCCTCTCTGGGGAGGCATTATG gcatggtgcctttgacctccacctagcatttgctctgtgaccttcgtcagGCTATCCAGATCAAGCTCAAGCAGGGTCTCTTCCCTATTACAACCTTGGGAGGGTTACTGATGATTCCTGCAGGGGCAGGGGTTTTTGCCCCAATTCGTTTAAGTGTGTGGTACCCCCCATGGGGTAGCATTATGgtaaggagctataaacaatcattattaggaggaggaagtggtactgatag #### Ms4a2_ID3243_2 --> 1 - 0 Original Alignment tGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA attaagatctgttaagaacactagtagtatggttcatgctttctccttagtGCACCTGACATTGAGCTCCTGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGACATGGCGGACCTTTCTGAAAAAAGAACTAGAGTTCCTGGGTgtaccattgtaggctttgttttcaatgacgaaagcattgccttctcctac Alignment from CESAR tGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA attaagatctgttaagaacactagtagtatggttcatgctttctccttagtGCACCTGACATTGAGCTCCTGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGACATGGCGGACCTTTCTGAAAAAAGAACTAGAGTTCCTGGGTgtaccattgtaggctttgttttcaatgacgaaagcattgccttctcctac Alignment from Spaln_aa2Genome TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA attaagatctgttaagaacactagtagtatggttcatgctttctccttagTGCACCTGACATTGAGCTCCTGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGACATGGCGGACCTTTCTGAAAAAAGAACTAGAGTTCCTGGGTgtaccattgtaggctttgttttcaatgacgaaagcattgccttctcctac Alignment from Spaln_nt2Genome TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA attaagatctgttaagaacactagtagtatggttcatgctttctccttagTGCACCTGACATTGAGCTCCTGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGACATGGCGGACCTTTCTGAAAAAAGAACTAGAGTTCCTGGGTgtaccattgtaggctttgttttcaatgacgaaagcattgccttctcctac Alignment from Pairagon TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA attaagatctgttaagaacactagtagtatggttcatgctttctccttagTGCACCTGACATTGAGCTCCTGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGACATGGCGGACCTTTCTGAAAAAAGAACTAGAGTTCCTGGGTgtaccattgtaggctttgttttcaatgacgaaagcattgccttctcctac Alignment from Exonerate_protein2genome TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA attaagatctgttaagaacactagtagtatggttcatgctttctccttagTGCACCTGACATTGAGCTCCTGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGACATGGCGGACCTTTCTGAAAAAAGAACTAGAGTTCCTGGGTgtaccattgtaggctttgttttcaatgacgaaagcattgccttctcctac Alignment from Exonerate_coding2genome TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA attaagatctgttaagaacactagtagtatggttcatgctttctccttagTGCACCTGACATTGAGCTCCTGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGACATGGCGGACCTTTCTGAAAAAAGAACTAGAGTTCCTGGGTgtaccattgtaggctttgttttcaatgacgaaagcattgccttctcctac Alignment from GeneWise TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA attaagatctgttaagaacactagtagtatggttcatgctttctccttagTGCACCTGACATTGAGCTCCTGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGACATGGCGGACCTTTCTGAAAAAAGAACTAGAGTTCCTGGGTgtaccattgtaggctttgttttcaatgacgaaagcattgccttctcctac #### Ms4a4d_ID3223_3 --> 0 - 0 Original Alignment TTCATTTTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAGCCATG gttaaatccagccaagggctgtacccgtgcaacattttttttccaattagTTTATTTTTTCAGGATCCTTGTCAATTGCTGCAGGAGTGAAACCTAAAAAAGCAACAgtaagtatcacaatatgtataggtactcaattagggtaacatcatatact Alignment from CESAR TTCATTTTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAGCCATG gttaaatccagccaagggctgtacccgtgcaacattttttttccaattagTTTATTTTTTCAGGATCCTTGTCAATTGCTGCAGGAGTGAAACCTAAAAAAGCAACAgtaagtatcacaatatgtataggtactcaattagggtaacatcatatact Alignment from Spaln_aa2Genome TTCATTTTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAGCCATG gttaaatccagccaagggctgtacccgtgcaacattttttttccaattagTTTATTTTTTCAGGATCCTTGTCAATTGCTGCAGGAGTGAAACCTAAAAAAGCAACAgtaagtatcacaatatgtataggtactcaattagggtaacatcatatact Alignment from Spaln_nt2Genome TTCATTTTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAGCCATG gttaaatccagccaagggctgtacccgtgcaacattttttttccaattagTTTATTTTTTCAGGATCCTTGTCAATTGCTGCAGGAGTGAAACCTAAAAAAGCAACAgtaagtatcacaatatgtataggtactcaattagggtaacatcatatact Alignment from Pairagon TTCATTTTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAGCCATG gttaaatccagccaagggctgtacccgtgcaacattttttttccaattagTTTATTTTTTCAGGATCCTTGTCAATTGCTGCAGGAGTGAAACCTAAAAAAGCAACAgtaagtatcacaatatgtataggtactcaattagggtaacatcatatact Alignment from Exonerate_protein2genome TTCATTTTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAGCCATG gttaaatccagccaagggctgtacccgtgcaacattttttttccaattagTTTATTTTTTCAGGATCCTTGTCAATTGCTGCAGGAGTGAAACCTAAAAAAGCAACAgtaagtatcacaatatgtataggtactcaattagggtaacatcatatact Alignment from Exonerate_coding2genome TTCATTTTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAGCCATG gttaaatccagccaagggctgtacccgtgcaacattttttttccaattagTTTATTTTTTCAGGATCCTTGTCAATTGCTGCAGGAGTGAAACCTAAAAAAGCAACAgtaagtatcacaatatgtataggtactcaattagggtaacatcatatact Alignment from GeneWise TTCATTTTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAGCCATG gttaaatccagccaagggctgtacccgtgcaacattttttttccaattagTTTATTTTTTCAGGATCCTTGTCAATTGCTGCAGGAGTGAAACCTAAAAAAGCAACAgtaagtatcacaatatgtataggtactcaattagggtaacatcatatact #### Ms4a6c_ID3198_3 --> 0 - 0 Original Alignment TTTATTGCCTCTGGAATTTTGTCCATCATTACGGAGAGAAAGTCAACAAAACCTTTG tggagaaatcgctctagaggactgatctccctgtctctacttctccctagTTTATTGCCTCTGGAATTTTATCCATCATTACAGAAAGGAAGTCCCGAAAACCTCTGgtggggccagaactgcccttctggaaccaatggagtcttcaggcttaagc Alignment from CESAR TTTATTGCCTCTGGAATTTTGTCCATCATTACGGAGAGAAAGTCAACAAAACCTTTG tggagaaatcgctctagaggactgatctccctgtctctacttctccctagTTTATTGCCTCTGGAATTTTATCCATCATTACAGAAAGGAAGTCCCGAAAACCTCTGgtggggccagaactgcccttctggaaccaatggagtcttcaggcttaagc Alignment from Spaln_aa2Genome TTTATTGCCTCTGGAATTTTGTCCATCATTACGGAGAGAAAGTCAACAAAACCTTTG tggagaaatcgctctagaggactgatctccctgtctctacttctccctagTTTATTGCCTCTGGAATTTTATCCATCATTACAGAAAGGAAGTCCCGAAAACCTCTGgtggggccagaactgcccttctggaaccaatggagtcttcaggcttaagc Alignment from Spaln_nt2Genome TTTATTGCCTCTGGAATTTTGTCCATCATTACGGAGAGAAAGTCAACAAAACCTTTG tggagaaatcgctctagaggactgatctccctgtctctacttctccctagTTTATTGCCTCTGGAATTTTATCCATCATTACAGAAAGGAAGTCCCGAAAACCTCTGgtggggccagaactgcccttctggaaccaatggagtcttcaggcttaagc Alignment from Pairagon TTTATTGCCTCTGGAATTTTGTCCATCATTACGGAGAGAAAGTCAACAAAACCTTTG tggagaaatcgctctagaggactgatctccctgtctctacttctccctagTTTATTGCCTCTGGAATTTTATCCATCATTACAGAAAGGAAGTCCCGAAAACCTCTGgtggggccagaactgcccttctggaaccaatggagtcttcaggcttaagc Alignment from Exonerate_protein2genome TTTATTGCCTCTGGAATTTTGTCCATCATTACGGAGAGAAAGTCAACAAAACCTTTG tggagaaatcgctctagaggactgatctccctgtctctacttctccctagTTTATTGCCTCTGGAATTTTATCCATCATTACAGAAAGGAAGTCCCGAAAACCTCTGgtggggccagaactgcccttctggaaccaatggagtcttcaggcttaagc Alignment from Exonerate_coding2genome TTTATTGCCTCTGGAATTTTGTCCATCATTACGGAGAGAAAGTCAACAAAACCTTTG tggagaaatcgctctagaggactgatctccctgtctctacttctccctagTTTATTGCCTCTGGAATTTTATCCATCATTACAGAAAGGAAGTCCCGAAAACCTCTGgtggggccagaactgcccttctggaaccaatggagtcttcaggcttaagc Alignment from GeneWise TTTATTGCCTCTGGAATTTTGTCCATCATTACGGAGAGAAAGTCAACAAAACCTTTG tggagaaatcgctctagaggactgatctccctgtctctacttctccctagTTTATTGCCTCTGGAATTTTATCCATCATTACAGAAAGGAAGTCCCGAAAACCTCTGgtggggccagaactgcccttctggaaccaatggagtcttcaggcttaagc #### Ms4a6c_ID3199_4 --> 0 - 0 Original Alignment GTAGATGCCAGCCTAACTCTGAATATCCTGAGTGTTTCATTTGCTTTCGTGGGCATCATTATCATCTCTGTCAGCCTGGCTGGTTTGCATCCTGCCTCAGAGCAATGCAAGCAGAGCAAGGAGCTTAGTCTAATTGAACATGACTACTACCAACCTTTCTACAACTCAGACAGGAGTGAATGTGCCGTCACCAAGTCTATTCTGACT atacagagaagccctttgagtaaagctaaccccttctcatctgcttacagGTAGATGTGAGTCTCACTTTGAATATTTTTAGTGTCTCATTTTCCTTTGTGGGC---ATCATTGTCCCTGTCAGCCTTGCTGGTCTGCATCCTACATCGGAGCAGTGCAAACAGAGCAAGGAATTCAGCCTAATAGAGCATGACTATCACCAGCCATTCTATAACTCAGACAGGAGTGAGTGTGCTGTCACCAAGTCCATTCTGACTgtatgtgtactgtagccctcttctacatttctggaaccgctatcattctg Alignment from CESAR GTAGATGCCAGCCTAACTCTGAATATCCTGAGTGTTTCATTTGCTTTCGTGGGCATCATTATCATCTCTGTCAGCCTGGCTGGTTTGCATCCTGCCTCAGAGCAATGCAAGCAGAGCAAGGAGCTTAGTCTAATTGAACATGACTACTACCAACCTTTCTACAACTCAGACAGGAGTGAATGTGCCGTCACCAAGTCTATTCTGACT atacagagaagccctttgagtaaagctaaccccttctcatctgcttacagGTAGATGTGAGTCTCACTTTGAATATTTTTAGTGTCTCATTTTCCTTTGTGGGCATCATT---GTCCCTGTCAGCCTTGCTGGTCTGCATCCTACATCGGAGCAGTGCAAACAGAGCAAGGAATTCAGCCTAATAGAGCATGACTATCACCAGCCATTCTATAACTCAGACAGGAGTGAGTGTGCTGTCACCAAGTCCATTCTGACTgtatgtgtactgtagccctcttctacatttctggaaccgctatcattctg Alignment from Spaln_aa2Genome GTAGATGCCAGCCTAACTCTGAATATCCTGAGTGTTTCATTTGCTTTCGTGGGCATCATTATCATCTCTGTCAGCCTGGCTGGTTTGCATCCTGCCTCAGAGCAATGCAAGCAGAGCAAGGAGCTTAGTCTAATTGAACATGACTACTACCAACCTTTCTACAACTCAGACAGGAGTGAATGTGCCGTCACCAAGTCTATTCTGACT atacagagaagccctttgagtaaagctaaccccttctcatctgcttacagGTAGATGTGAGTCTCACTTTGAATATTTTTAGTGTCTCATTTTCCTTTGTGGGC---ATCATTGTCCCTGTCAGCCTTGCTGGTCTGCATCCTACATCGGAGCAGTGCAAACAGAGCAAGGAATTCAGCCTAATAGAGCATGACTATCACCAGCCATTCTATAACTCAGACAGGAGTGAGTGTGCTGTCACCAAGTCCATTCTGACTgtatgtgtactgtagccctcttctacatttctggaaccgctatcattctg Alignment from Spaln_nt2Genome GTAGATGCCAGCCTAACTCTGAATATCCTGAGTGTTTCATTTGCTTTCGTGGGCATCATTATCATCTCTGTCAGCCTGGCTGGTTTGCATCCTGCCTCAGAGCAATGCAAGCAGAGCAAGGAGCTTAGTCTAATTGAACATGACTACTACCAACCTTTCTACAACTCAGACAGGAGTGAATGTGCCGTCACCAAGTCTATTCTGACT atacagagaagccctttgagtaaagctaaccccttctcatctgcttacagGTAGATGTGAGTCTCACTTTGAATATTTTTAGTGTCTCATTTTCCTTTGTGGGCATCATT---GTCCCTGTCAGCCTTGCTGGTCTGCATCCTACATCGGAGCAGTGCAAACAGAGCAAGGAATTCAGCCTAATAGAGCATGACTATCACCAGCCATTCTATAACTCAGACAGGAGTGAGTGTGCTGTCACCAAGTCCATTCTGACTgtatgtgtactgtagccctcttctacatttctggaaccgctatcattctg Alignment from Pairagon GTAGATGCCAGCCTAACTCTGAATATCCTGAGTGTTTCATTTGCTTTCGTGGGCATCATTATCATCTCTGTCAGCCTGGCTGGTTTGCATCCTGCCTCAGAGCAATGCAAGCAGAGCAAGGAGCTTAGTCTAATTGAACATGACTACTACCAACCTTTCTACAACTCAGACAGGAGTGAATGTGCCGTCACCAAGTCTATTCTGACT atacagagaagccctttgagtaaagctaaccccttctcatctgcttacagGTAGATGTGAGTCTCACTTTGAATATTTTTAGTGTCTCATTTTCCTTTGTGGGCATCATT---GTCCCTGTCAGCCTTGCTGGTCTGCATCCTACATCGGAGCAGTGCAAACAGAGCAAGGAATTCAGCCTAATAGAGCATGACTATCACCAGCCATTCTATAACTCAGACAGGAGTGAGTGTGCTGTCACCAAGTCCATTCTGACTgtatgtgtactgtagccctcttctacatttctggaaccgctatcattctg Alignment from Exonerate_protein2genome GTAGATGCCAGCCTAACTCTGAATATCCTGAGTGTTTCATTTGCTTTCGTGGGCATCATTATCATCTCTGTCAGCCTGGCTGGTTTGCATCCTGCCTCAGAGCAATGCAAGCAGAGCAAGGAGCTTAGTCTAATTGAACATGACTACTACCAACCTTTCTACAACTCAGACAGGAGTGAATGTGCCGTCACCAAGTCTATTCTGACT atacagagaagccctttgagtaaagctaaccccttctcatctgcttacagGTAGATGTGAGTCTCACTTTGAATATTTTTAGTGTCTCATTTTCCTTTGTGGGC---ATCATTGTCCCTGTCAGCCTTGCTGGTCTGCATCCTACATCGGAGCAGTGCAAACAGAGCAAGGAATTCAGCCTAATAGAGCATGACTATCACCAGCCATTCTATAACTCAGACAGGAGTGAGTGTGCTGTCACCAAGTCCATTCTGACTgtatgtgtactgtagccctcttctacatttctggaaccgctatcattctg Alignment from Exonerate_coding2genome GTAGATGCCAGCCTAACTCTGAATATCCTGAGTGTTTCATTTGCTTTCGTGGGCATCATTATCATCTCTGTCAGCCTGGCTGGTTTGCATCCTGCCTCAGAGCAATGCAAGCAGAGCAAGGAGCTTAGTCTAATTGAACATGACTACTACCAACCTTTCTACAACTCAGACAGGAGTGAATGTGCCGTCACCAAGTCTATTCTGACT atacagagaagccctttgagtaaagctaaccccttctcatctgcttacagGTAGATGTGAGTCTCACTTTGAATATTTTTAGTGTCTCATTTTCCTTTGTGGGC---ATCATTGTCCCTGTCAGCCTTGCTGGTCTGCATCCTACATCGGAGCAGTGCAAACAGAGCAAGGAATTCAGCCTAATAGAGCATGACTATCACCAGCCATTCTATAACTCAGACAGGAGTGAGTGTGCTGTCACCAAGTCCATTCTGACTgtatgtgtactgtagccctcttctacatttctggaaccgctatcattctg Alignment from GeneWise GTAGATGCCAGCCTAACTCTGAATATCCTGAGTGTTTCATTTGCTTTCGTGGGCATCATTATCATCTCTGTCAGCCTGGCTGGTTTGCATCCTGCCTCAGAGCAATGCAAGCAGAGCAAGGAGCTTAGTCTAATTGAACATGACTACTACCAACCTTTCTACAACTCAGACAGGAGTGAATGTGCCGTCACCAAGTCTATTCTGACT atacagagaagccctttgagtaaagctaaccccttctcatctgcttacagGTAGATGTGAGTCTCACTTTGAATATTTTTAGTGTCTCATTTTCCTTTGTGGGCATCATTGTC---CCTGTCAGCCTTGCTGGTCTGCATCCTACATCGGAGCAGTGCAAACAGAGCAAGGAATTCAGCCTAATAGAGCATGACTATCACCAGCCATTCTATAACTCAGACAGGAGTGAGTGTGCTGTCACCAAGTCCATTCTGACTgtatgtgtactgtagccctcttctacatttctggaaccgctatcattctg #### Ms4a6c_ID3200_5 --> 0 - 2 Original Alignment GGAGCCCTTTCAGTGATGCTGATCATCAGTGTGTTGGAGCTTGGTCTGGCTTTGCTCTCTGCCATGCTGTGGTTGAGAGAGGGTGTTCTGACTTCCCTTag agtggtggcatgtggtatactcctgccagctctgtgtttttctttctcagGGAGCCCTCTCTGTTATGCTCATCATCAGTGTCTTGGCCCTTGGCCTTGCCTTGATCTCTGCG---TTGAGATTGAGAGAGGGTGTGCTAACCTCCCTTcggtgagttgcccaattcctaggaacaaccatcttactatctcctgaccttt Alignment from CESAR GGAGCCCTTTCAGTGATGCTGATCATCAGTGTGTTGGAGCTTGGTCTGGCTTTGCTCTCTGCCATGCTGTGGTTGAGAGAGGGTGTTCTGACTTCCCTTag agtggtggcatgtggtatactcctgccagctctgtgtttttctttctcagGGAGCCCTCTCTGTTATGCTCATCATCAGTGTCTTGGCCCTTGGCCTTGCCTTGATCTCTGCG---TTGAGATTGAGAGAGGGTGTGCTAACCTCCCTTcggtgagttgcccaattcctaggaacaaccatcttactatctcctgaccttt Alignment from Spaln_aa2Genome GGAGCCCTTTCAGTGATGCTGATCATCAGTGTGTTGGAGCTTGGTCTGGCTTTGCTCTCTGCCATGCTGTGGTTGAGAGAGGGTGTTCTGACTTCCCTTAGAATG agtggtggcatgtggtatactcctgccagctctgtgtttttctttctcagGGAGCCCTCTCTGTTATGCTCATCATCAGTGTCTTGGCCCTTGGCCTTGCCTTGATCTCTGCG---TTGAGATTGAGAGAGGGTGTGCTAACCTCCCTTCGG---tgagttgcccaattcctaggaacaaccatcttactatctcctgacc Alignment from Spaln_nt2Genome GGAGCCCTTTCAGTGATGCTGATCATCAGTGTGTTGGAGCTTGGTCTGGCTTTGCTCTCTGCCATGCTGTGGTTGAGAGAGGGTGTTCTGACTTCCCTTAG agtggtggcatgtggtatactcctgccagctctgtgtttttctttctcagGGAGCCCTCTCTGTTATGCTCATCATCAGTGTCTTGGCCCTTGGCCTTGCCTTGATCTCTGC---GTTGAGATTGAGAGAGGGTGTGCTAACCTCCCTTCGgtgagttgcccaattcctaggaacaaccatcttactatctcctgaccttt Alignment from Pairagon GGAGCCCTTTCAGTGATGCTGATCATCAGTGTGTTGGAGCTTGGTCTGGCTTTGCTCTCTGCCATGCTGTGGTTGAGAGAGGGTGTTCTGACTTCCCTTAG agtggtggcatgtggtatactcctgccagctctgtgtttttctttctcagGGAGCCCTCTCTGTTATGCTCATCATCAGTGTCTTGGCCCTTGGCCTTGCCTTGATCTCTGC---GTTGAGATTGAGAGAGGGTGTGCTAACCTCCCTTCGgtgagttgcccaattcctaggaacaaccatcttactatctcctgaccttt Alignment from Exonerate_protein2genome GGAGCCCTTTCAGTGATGCTGATCATCAGTGTGTTGGAGCTTGGTCTGGCTTTGCTCTCTGCCATGCTGTGGTTGAGAGAGGGTGTTCTGACTTCCCTTAGA agtggtggcatgtggtatactcctgccagctctgtgtttttctttctcagGGAGCCCTCTCTGTTATGCTCATCATCAGTGTCTTGGCCCTTGGCCTTGCCTTGATCTCTGCG---TTGAGATTGAGAGAGGGTGTGCTAACCTCCCTTCGGtgagttgcccaattcctaggaacaaccatcttactatctcctgaccttt Alignment from Exonerate_coding2genome agtggtggcatgtggtatactcctgccagctctgtgtttttctttctcagggagccctctctgttatgctcatcatcagtgtcttggcccttggccttgccttgatctctgcgttgagattgagagagggtgtgctaacctcccttcggtgagttgcccaattcctaggaacaaccatcttactatctcctgaccttt Alignment from GeneWise GGAGCCCTTTCAGTGATGCTGATCATCAGTGTGTTGGAGCTTGGTCTGGCTTTGCTCTCTGCCATGCTGTGGTTGAGAGAGGGTGTTCTGACTTCCCTTAGAATG agtggtggcatgtggtatactcctgccagctctgtgtttttctttctcagGGAGCCCTCTCTGTTATGCTCATCATCAGTGTCTTGGCCCTTGGCCTTGCCTTGATCTCTGCG---TTGAGATTGAGAGAGGGTGTGCTAACCTCCCTTCGG---tgagttgcccaattcctaggaacaaccatcttactatctcctgacc #### Ms4a6d_ID3232_3 --> 0 - 0 Original Alignment TTTGCCATCTCTGGAATTCTGTCTATTGTCACAGAGAAAAAGATGACTAAG------CCTTTG tattccagatctagaactaaaaataatcttctccattgttttactgacagTTTACCATCTCCGGAATACCATCCATTCTGACTGAGAAAAAGATGACTAAACATCCTCCCTTAgtatgcgcattccaatgtgttactgtgatggggtgtatgatgcacaccct Alignment from CESAR TTTGCCATCTCTGGAATTCTGTCTATTGTCACAGAGAAAAAGATGACTAAG------CCTTTG tattccagatctagaactaaaaataatcttctccattgttttactgacagTTTACCATCTCCGGAATACCATCCATTCTGACTGAGAAAAAGATGACTAAACATCCTCCCTTAgtatgcgcattccaatgtgttactgtgatggggtgtatgatgcacaccct Alignment from Spaln_aa2Genome TTTGCCATCTCTGGAATTCTGTCTATTGTCACAGAGAAAAAGATGACTAAG------CCTTTG tattccagatctagaactaaaaataatcttctccattgttttactgacagTTTACCATCTCCGGAATACCATCCATTCTGACTGAGAAAAAGATGACTAAACATCCTCCCTTAgtatgcgcattccaatgtgttactgtgatggggtgtatgatgcacaccct Alignment from Spaln_nt2Genome TTTGCCATCTCTGGAATTCTGTCTATTGTCACAGAGAAAAAGATGACTAAGCCT------TTG tattccagatctagaactaaaaataatcttctccattgttttactgacagTTTACCATCTCCGGAATACCATCCATTCTGACTGAGAAAAAGATGACTAAACATCCTCCCTTAgtatgcgcattccaatgtgttactgtgatggggtgtatgatgcacaccct Alignment from Pairagon TTTGCCATCTCTGGAATTCTGTCTATTGTCACAGAGAAAAAGATGACTAAG------CCTTTG tattccagatctagaactaaaaataatcttctccattgttttactgacagTTTACCATCTCCGGAATACCATCCATTCTGACTGAGAAAAAGATGACTAAACATCCTCCCTTAgtatgcgcattccaatgtgttactgtgatggggtgtatgatgcacaccct Alignment from Exonerate_protein2genome TTTGCCATCTCTGGAATTCTGTCTATTGTCACAGAGAAAAAGATGACTAAG------CCTTTG tattccagatctagaactaaaaataatcttctccattgttttactgacagTTTACCATCTCCGGAATACCATCCATTCTGACTGAGAAAAAGATGACTAAACATCCTCCCTTAgtatgcgcattccaatgtgttactgtgatggggtgtatgatgcacaccct Alignment from Exonerate_coding2genome TTTGCCATCTCTGGAATTCTGTCTATTGTCACAGAGAAAAAGATGACTAAG------CCTTTG tattccagatctagaactaaaaataatcttctccattgttttactgacagTTTACCATCTCCGGAATACCATCCATTCTGACTGAGAAAAAGATGACTAAACATCCTCCCTTAgtatgcgcattccaatgtgttactgtgatggggtgtatgatgcacaccct Alignment from GeneWise TTTGCCATCTCTGGAATTCTGTCTATTGTCACAGAGAAAAAGATGACTAAG------CCTTTG tattccagatctagaactaaaaataatcttctccattgttttactgacagTTTACCATCTCCGGAATACCATCCATTCTGACTGAGAAAAAGATGACTAAACATCCTCCCTTAgtatgcgcattccaatgtgttactgtgatggggtgtatgatgcacaccct #### Ms4a8a_ID3116_4 --> 0 - 0 Original Alignment TTTATCATTTCAGGATCTCTCTCAGTG---------GCGGCAGAAACTCAGCCCAATTCACCTTGCCTG actcttgtagtttgcagattgtatagctaggtgtgtgctctccttcgtag------TTCTCTGGCTCACTTACAGTATGTGGTTGCACAACGGAAACTCAACCTAATCCCCCTTCTCTGgtaagttagaaagatgcttatcctcaggtgaagagtgtagacactacatg Alignment from CESAR TTTATCATTTCAGGATCTCTCTCAGTG---------GCGGCAGAAACTCAGCCCAATTCACCTTGCCTG actcttgtagtttgcagattgtatagctaggtgtgtgctctccttcgtagTTC------TCTGGCTCACTTACAGTATGTGGTTGCACAACGGAAACTCAACCTAATCCCCCTTCTCTGgtaagttagaaagatgcttatcctcaggtgaagagtgtagacactacatg Alignment from Spaln_aa2Genome TTTATCATTTCAGGATCTCTCTCAGTG---------GCGGCAGAAACTCAGCCCAATTCACCTTGCCTG actcttgtagtttgcagattgtatagctaggtgtgtgctctccttcgtagTTC------TCTGGCTCACTTACAGTATGTGGTTGCACAACGGAAACTCAACCTAATCCCCCTTCTCTGgtaagttagaaagatgcttatcctcaggtgaagagtgtagacactacatg Alignment from Spaln_nt2Genome ATTTCAGGATCTCTCTCAGT----GGCGGCA-----GAAACTCAGCCCAATTCACCTTGCCTG actcttgtagtttgcagattgtatagctaggtgtgtgctctccttcgtagTTCTCTGGCTCACTTACAGTATGTGGTTGCACAACGGAAACTCAACCTAATCCCCCTTCTCTGgtaagttagaaagatgcttatcctcaggtgaagagtgtagacactacatg Alignment from Pairagon TTTATCATTTCAGGATCTCTCTCAGTGGCGGCA-----GAAACTCAGCCCAATTCACCTTGCCTG actcttgtagtttgcagattgtatagctaggtgtgtgctctccttcgtagttctctggctcacttacagTAT---------------------GTGGTTGCACAACGGAAACTCAACCTAATCCCCCTTCTCTGgtaagttagaaagatgcttatcctcaggtgaagagtgtagacactacatg Alignment from Exonerate_protein2genome TTTATCATTTCAGGATCTCTC---TCAGTGGCGGCAGAAACTCAGCCCAATTCACCTTGCCTG actcttgtagtttgcagattgtatagctaggtgtgtgctctccttcgtagTTCTCTGGCTCACTTACAGTATGTGGTTGCACAACGGAAACTCAACCTAATCCCCCTTCTCTGgtaagttagaaagatgcttatcctcaggtgaagagtgtagacactacatg Alignment from Exonerate_coding2genome actcttgtagtttgcagattgtatagctaggtgtgtgctctccttcgtagttctctggctcacttacagtatgtggttgcacaacggaaactcaacctaatcccccttctctggtaagttagaaagatgcttatcctcaggtgaagagtgtagacactacatg Alignment from GeneWise TTTATCATTTCAGGATCTCTCTCAGTGGCGGCA---------GAAACTCAGCCCAATTCACCTTGCCTG actcttgtagtttgcagattgtatagctaggtgtgtgctctccttcgtagTTC------TCTGGCTCACTTACAGTATGTGGTTGCACAACGGAAACTCAACCTAATCCCCCTTCTCTGgtaagttagaaagatgcttatcctcaggtgaagagtgtagacactacatg #### Ms4a8a_ID3118_2 --> 1 - 0 Original Alignment cATGAATACAGTAACTTCACCGGGCCCCATGGCCAATTCTGTATATGTGGTGGCACCGCCCAACAGTTATCCTGTGGTCCCAGGAACCGTGCCTCAGATGCCTATTTATCCCAGCAATCAGCCTCAAGTCCATGTGATTTCTGGTCATCTGCCTGGTTTGGTGCCAGCTATGACCGAACCGCCTGCCCAGAGAGTCTTGAAAAAGGGACAAGTCCTAGGG ggcacctcacagtttgaatggaaaagaagcccagtgcctgctgtgctcagtATGAATACAGTAACCTCTCCAGGCCCTATGGCCAATTCTGTATATGTGGTGGCACCACCCAACAGTTATCCTGTTGTACCAGGTACAGTGCCACAGATGCCAATTTATCCACGGAATCAGCGTCCAATCCATGTGATTTCTGGTCACCTCCCAGGATTGGTGCCAGCTATGACTGAACCTCCTGCGCAGAGAGTGTTGAAAAAGGGACAGGTCCTAGGGgtaagtaagagggcaaacaggaaatctgagggacatagttatagagagag Alignment from CESAR cATGAATACAGTAACTTCACCGGGCCCCATGGCCAATTCTGTATATGTGGTGGCACCGCCCAACAGTTATCCTGTGGTCCCAGGAACCGTGCCTCAGATGCCTATTTATCCCAGCAATCAGCCTCAAGTCCATGTGATTTCTGGTCATCTGCCTGGTTTGGTGCCAGCTATGACCGAACCGCCTGCCCAGAGAGTCTTGAAAAAGGGACAAGTCCTAGGG ggcacctcacagtttgaatggaaaagaagcccagtgcctgctgtgctcagtATGAATACAGTAACCTCTCCAGGCCCTATGGCCAATTCTGTATATGTGGTGGCACCACCCAACAGTTATCCTGTTGTACCAGGTACAGTGCCACAGATGCCAATTTATCCACGGAATCAGCGTCCAATCCATGTGATTTCTGGTCACCTCCCAGGATTGGTGCCAGCTATGACTGAACCTCCTGCGCAGAGAGTGTTGAAAAAGGGACAGGTCCTAGGGgtaagtaagagggcaaacaggaaatctgagggacatagttatagagagag Alignment from Spaln_aa2Genome CATGAATACAGTAACTTCACCGGGCCCCATGGCCAATTCTGTATATGTGGTGGCACCGCCCAACAGTTATCCTGTGGTCCCAGGAACCGTGCCTCAGATGCCTATTTATCCCAGCAATCAGCCTCAAGTCCATGTGATTTCTGGTCATCTGCCTGGTTTGGTGCCAGCTATGACCGAACCGCCTGCCCAGAGAGTCTTGAAAAAGGGACAAGTCCTAGGG ggcacctcacagtttgaatggaaaagaagcccagtgcctgctgtgctcagTATGAATACAGTAACCTCTCCAGGCCCTATGGCCAATTCTGTATATGTGGTGGCACCACCCAACAGTTATCCTGTTGTACCAGGTACAGTGCCACAGATGCCAATTTATCCACGGAATCAGCGTCCAATCCATGTGATTTCTGGTCACCTCCCAGGATTGGTGCCAGCTATGACTGAACCTCCTGCGCAGAGAGTGTTGAAAAAGGGACAGGTCCTAGGGgtaagtaagagggcaaacaggaaatctgagggacatagttatagagagag Alignment from Spaln_nt2Genome CATGAATACAGTAACTTCACCGGGCCCCATGGCCAATTCTGTATATGTGGTGGCACCGCCCAACAGTTATCCTGTGGTCCCAGGAACCGTGCCTCAGATGCCTATTTATCCCAGCAATCAGCCTCAAGTCCATGTGATTTCTGGTCATCTGCCTGGTTTGGTGCCAGCTATGACCGAACCGCCTGCCCAGAGAGTCTTGAAAAAGGGACAAGTCCTAGGG ggcacctcacagtttgaatggaaaagaagcccagtgcctgctgtgctcagTATGAATACAGTAACCTCTCCAGGCCCTATGGCCAATTCTGTATATGTGGTGGCACCACCCAACAGTTATCCTGTTGTACCAGGTACAGTGCCACAGATGCCAATTTATCCACGGAATCAGCGTCCAATCCATGTGATTTCTGGTCACCTCCCAGGATTGGTGCCAGCTATGACTGAACCTCCTGCGCAGAGAGTGTTGAAAAAGGGACAGGTCCTAGGGgtaagtaagagggcaaacaggaaatctgagggacatagttatagagagag Alignment from Pairagon CATGAATACAGTAACTTCACCGGGCCCCATGGCCAATTCTGTATATGTGGTGGCACCGCCCAACAGTTATCCTGTGGTCCCAGGAACCGTGCCTCAGATGCCTATTTATCCCAGCAATCAGCCTCAAGTCCATGTGATTTCTGGTCATCTGCCTGGTTTGGTGCCAGCTATGACCGAACCGCCTGCCCAGAGAGTCTTGAAAAAGGGACAAGTCCTAGGG ggcacctcacagtttgaatggaaaagaagcccagtgcctgctgtgctcagTATGAATACAGTAACCTCTCCAGGCCCTATGGCCAATTCTGTATATGTGGTGGCACCACCCAACAGTTATCCTGTTGTACCAGGTACAGTGCCACAGATGCCAATTTATCCACGGAATCAGCGTCCAATCCATGTGATTTCTGGTCACCTCCCAGGATTGGTGCCAGCTATGACTGAACCTCCTGCGCAGAGAGTGTTGAAAAAGGGACAGGTCCTAGGGgtaagtaagagggcaaacaggaaatctgagggacatagttatagagagag Alignment from Exonerate_protein2genome CATGAATACAGTAACTTCACCGGGCCCCATGGCCAATTCTGTATATGTGGTGGCACCGCCCAACAGTTATCCTGTGGTCCCAGGAACCGTGCCTCAGATGCCTATTTATCCCAGCAATCAGCCTCAAGTCCATGTGATTTCTGGTCATCTGCCTGGTTTGGTGCCAGCTATGACCGAACCGCCTGCCCAGAGAGTCTTGAAAAAGGGACAAGTCCTAGGG ggcacctcacagtttgaatggaaaagaagcccagtgcctgctgtgctcagTATGAATACAGTAACCTCTCCAGGCCCTATGGCCAATTCTGTATATGTGGTGGCACCACCCAACAGTTATCCTGTTGTACCAGGTACAGTGCCACAGATGCCAATTTATCCACGGAATCAGCGTCCAATCCATGTGATTTCTGGTCACCTCCCAGGATTGGTGCCAGCTATGACTGAACCTCCTGCGCAGAGAGTGTTGAAAAAGGGACAGGTCCTAGGGgtaagtaagagggcaaacaggaaatctgagggacatagttatagagagag Alignment from Exonerate_coding2genome CATGAATACAGTAACTTCACCGGGCCCCATGGCCAATTCTGTATATGTGGTGGCACCGCCCAACAGTTATCCTGTGGTCCCAGGAACCGTGCCTCAGATGCCTATTTATCCCAGCAATCAGCCTCAAGTCCATGTGATTTCTGGTCATCTGCCTGGTTTGGTGCCAGCTATGACCGAACCGCCTGCCCAGAGAGTCTTGAAAAAGGGACAAGTCCTAGGG ggcacctcacagtttgaatggaaaagaagcccagtgcctgctgtgctcagTATGAATACAGTAACCTCTCCAGGCCCTATGGCCAATTCTGTATATGTGGTGGCACCACCCAACAGTTATCCTGTTGTACCAGGTACAGTGCCACAGATGCCAATTTATCCACGGAATCAGCGTCCAATCCATGTGATTTCTGGTCACCTCCCAGGATTGGTGCCAGCTATGACTGAACCTCCTGCGCAGAGAGTGTTGAAAAAGGGACAGGTCCTAGGGgtaagtaagagggcaaacaggaaatctgagggacatagttatagagagag Alignment from GeneWise CATGAATACAGTAACTTCACCGGGCCCCATGGCCAATTCTGTATATGTGGTGGCACCGCCCAACAGTTATCCTGTGGTCCCAGGAACCGTGCCTCAGATGCCTATTTATCCCAGCAATCAGCCTCAAGTCCATGTGATTTCTGGTCATCTGCCTGGTTTGGTGCCAGCTATGACCGAACCGCCTGCCCAGAGAGTCTTGAAAAAGGGACAAGTCCTAGGG ggcacctcacagtttgaatggaaaagaagcccagtgcctgctgtgctcagTATGAATACAGTAACCTCTCCAGGCCCTATGGCCAATTCTGTATATGTGGTGGCACCACCCAACAGTTATCCTGTTGTACCAGGTACAGTGCCACAGATGCCAATTTATCCACGGAATCAGCGTCCAATCCATGTGATTTCTGGTCACCTCCCAGGATTGGTGCCAGCTATGACTGAACCTCCTGCGCAGAGAGTGTTGAAAAAGGGACAGGTCCTAGGGgtaagtaagagggcaaacaggaaatctgagggacatagttatagagagag #### Mta2_ID2537_10 --> 0 - 0 Original Alignment CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG aaaagacaagacggaccaattgaacactcggattctttttgtgtctccagCTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtaggtggcaggataagcaaggaccagaatcaaaggcggtcatgagcctg Alignment from CESAR CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG aaaagacaagacggaccaattgaacactcggattctttttgtgtctccagCTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtaggtggcaggataagcaaggaccagaatcaaaggcggtcatgagcctg Alignment from Spaln_aa2Genome CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG aaaagacaagacggaccaattgaacactcggattctttttgtgtctccagCTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtaggtggcaggataagcaaggaccagaatcaaaggcggtcatgagcctg Alignment from Spaln_nt2Genome CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG aaaagacaagacggaccaattgaacactcggattctttttgtgtctccagCTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtaggtggcaggataagcaaggaccagaatcaaaggcggtcatgagcctg Alignment from Pairagon CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG aaaagacaagacggaccaattgaacactcggattctttttgtgtctccagCTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtaggtggcaggataagcaaggaccagaatcaaaggcggtcatgagcctg Alignment from Exonerate_protein2genome CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG aaaagacaagacggaccaattgaacactcggattctttttgtgtctccagCTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtaggtggcaggataagcaaggaccagaatcaaaggcggtcatgagcctg Alignment from Exonerate_coding2genome CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG aaaagacaagacggaccaattgaacactcggattctttttgtgtctccagCTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtaggtggcaggataagcaaggaccagaatcaaaggcggtcatgagcctg Alignment from GeneWise CTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG aaaagacaagacggaccaattgaacactcggattctttttgtgtctccagCTACCCTGGAAGTCACTTGCAAGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtaggtggcaggataagcaaggaccagaatcaaaggcggtcatgagcctg #### Mtl5_ID52_4 --> 2 - 0 Original Alignment agCTCCCTAAGCCAATGACAACTTTAGTGGGAAGACTTCTGCCAGTACCAGCGAAGTTAAATCTCATCACACAG caatggagtcaaccctcatggtgaccaaaaatatgcacatttcattttagacCTCCCCAAGCCTATGACTACTATCGTTGGGGAACTTCTACCAGTACCAGCAAAGCTAAATCTAATTACACAGgtgagtattttttccttatatcacttatggccaccctcagaacgtgtggt Alignment from CESAR agCTCCCTAAGCCAATGACAACTTTAGTGGGAAGACTTCTGCCAGTACCAGCGAAGTTAAATCTCATCACACAG caatggagtcaaccctcatggtgaccaaaaatatgcacatttcattttagacCTCCCCAAGCCTATGACTACTATCGTTGGGGAACTTCTACCAGTACCAGCAAAGCTAAATCTAATTACACAGgtgagtattttttccttatatcacttatggccaccctcagaacgtgtggt Alignment from Spaln_aa2Genome AGCTCCCTAAGCCAATGACAACTTTAGTGGGAAGACTTCTGCCAGTACCAGCGAAGTTAAATCTCATCACACAG caatggagtcaaccctcatggtgaccaaaaatatgcacatttcattttagACCTCCCCAAGCCTATGACTACTATCGTTGGGGAACTTCTACCAGTACCAGCAAAGCTAAATCTAATTACACAGgtgagtattttttccttatatcacttatggccaccctcagaacgtgtggt Alignment from Spaln_nt2Genome AGCTCCCTAAGCCAATGACAACTTTAGTGGGAAGACTTCTGCCAGTACCAGCGAAGTTAAATCTCATCACACAG caatggagtcaaccctcatggtgaccaaaaatatgcacatttcattttagACCTCCCCAAGCCTATGACTACTATCGTTGGGGAACTTCTACCAGTACCAGCAAAGCTAAATCTAATTACACAGgtgagtattttttccttatatcacttatggccaccctcagaacgtgtggt Alignment from Pairagon AGCTCCCTAAGCCAATGACAACTTTAGTGGGAAGACTTCTGCCAGTACCAGCGAAGTTAAATCTCATCACACAG caatggagtcaaccctcatggtgaccaaaaatatgcacatttcattttagACCTCCCCAAGCCTATGACTACTATCGTTGGGGAACTTCTACCAGTACCAGCAAAGCTAAATCTAATTACACAGgtgagtattttttccttatatcacttatggccaccctcagaacgtgtggt Alignment from Exonerate_protein2genome AGCTCCCTAAGCCAATGACAACTTTAGTGGGAAGACTTCTGCCAGTACCAGCGAAGTTAAATCTCATCACACAG caatggagtcaaccctcatggtgaccaaaaatatgcacatttcattttagACCTCCCCAAGCCTATGACTACTATCGTTGGGGAACTTCTACCAGTACCAGCAAAGCTAAATCTAATTACACAGgtgagtattttttccttatatcacttatggccaccctcagaacgtgtggt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AGCTCCCTAAGCCAATGACAACTTTAGTGGGAAGACTTCTGCCAGTACCAGCGAAGTTAAATCTCATCACACAG caatggagtcaaccctcatggtgaccaaaaatatgcacatttcattttagACCTCCCCAAGCCTATGACTACTATCGTTGGGGAACTTCTACCAGTACCAGCAAAGCTAAATCTAATTACACAGgtgagtattttttccttatatcacttatggccaccctcagaacgtgtggt #### Myrf_ID2713_24 --> 1 - 0 Original Alignment tTCCTCCACCCCTGTGTCCGTGGTACTGTGCAGCCTGACATCGGAGGAGGAGCCCTGTGAGGAGGGAGGCTTTTTGCAGAGGTTCCACCCGCATCAGGACACCCAG tcatcgtgtagaatgccaggaagttatcctctgacttctgtttcatacagtTCTTCTACTCCACTGTCTGTAATACTGTGCAGCCTGACATCAGAGCAGGAGCCATGTGAGGAAGGAGGCTTTTTGCAGAGGTTCCACCCACATCCTGATATTCAAgtgactcaaagaggggagatatgggttcagcctctcaaacccggcagccc Alignment from CESAR tTCCTCCACCCCTGTGTCCGTGGTACTGTGCAGCCTGACATCGGAGGAGGAGCCCTGTGAGGAGGGAGGCTTTTTGCAGAGGTTCCACCCGCATCAGGACACCCAG tcatcgtgtagaatgccaggaagttatcctctgacttctgtttcatacagtTCTTCTACTCCACTGTCTGTAATACTGTGCAGCCTGACATCAGAGCAGGAGCCATGTGAGGAAGGAGGCTTTTTGCAGAGGTTCCACCCACATCCTGATATTCAAgtgactcaaagaggggagatatgggttcagcctctcaaacccggcagccc Alignment from Spaln_aa2Genome TTCCTCCACCCCTGTGTCCGTGGTACTGTGCAGCCTGACATCGGAGGAGGAGCCCTGTGAGGAGGGAGGCTTTTTGCAGAGGTTCCACCCGCATCAGGACACCCAG tcatcgtgtagaatgccaggaagttatcctctgacttctgtttcatacagTTCTTCTACTCCACTGTCTGTAATACTGTGCAGCCTGACATCAGAGCAGGAGCCATGTGAGGAAGGAGGCTTTTTGCAGAGGTTCCACCCACATCCTGATATTCAAgtgactcaaagaggggagatatgggttcagcctctcaaacccggcagccc Alignment from Spaln_nt2Genome TTCCTCCACCCCTGTGTCCGTGGTACTGTGCAGCCTGACATCGGAGGAGGAGCCCTGTGAGGAGGGAGGCTTTTTGCAGAGGTTCCACCCGCATCAGGACACCCAG tcatcgtgtagaatgccaggaagttatcctctgacttctgtttcatacagTTCTTCTACTCCACTGTCTGTAATACTGTGCAGCCTGACATCAGAGCAGGAGCCATGTGAGGAAGGAGGCTTTTTGCAGAGGTTCCACCCACATCCTGATATTCAAgtgactcaaagaggggagatatgggttcagcctctcaaacccggcagccc Alignment from Pairagon TTCCTCCACCCCTGTGTCCGTGGTACTGTGCAGCCTGACATCGGAGGAGGAGCCCTGTGAGGAGGGAGGCTTTTTGCAGAGGTTCCACCCGCATCAGGACACCCAG tcatcgtgtagaatgccaggaagttatcctctgacttctgtttcatacagTTCTTCTACTCCACTGTCTGTAATACTGTGCAGCCTGACATCAGAGCAGGAGCCATGTGAGGAAGGAGGCTTTTTGCAGAGGTTCCACCCACATCCTGATATTCAAgtgactcaaagaggggagatatgggttcagcctctcaaacccggcagccc Alignment from Exonerate_protein2genome TTCCTCCACCCCTGTGTCCGTGGTACTGTGCAGCCTGACATCGGAGGAGGAGCCCTGTGAGGAGGGAGGCTTTTTGCAGAGGTTCCACCCGCATCAGGACACCCAG tcatcgtgtagaatgccaggaagttatcctctgacttctgtttcatacagTTCTTCTACTCCACTGTCTGTAATACTGTGCAGCCTGACATCAGAGCAGGAGCCATGTGAGGAAGGAGGCTTTTTGCAGAGGTTCCACCCACATCCTGATATTCAAgtgactcaaagaggggagatatgggttcagcctctcaaacccggcagccc Alignment from Exonerate_coding2genome tcatcgtgtagaatgccaggaagttatcctctgacttctgtttcatacagttcttctactccactgtctgtaatactgtgcagcctgacatcagagcaggagccatgtgaggaaggaggctttttgcagaggttccacccacatcctgatattcaagtgactcaaagaggggagatatgggttcagcctctcaaacccggcagccc Alignment from GeneWise TTCCTCCACCCCTGTGTCCGTGGTACTGTGCAGCCTGACATCGGAGGAGGAGCCCTGTGAGGAGGGAGGCTTTTTGCAGAGGTTCCACCCGCATCAGGACACCCAG tcatcgtgtagaatgccaggaagttatcctctgacttctgtttcatacagTTCTTCTACTCCACTGTCTGTAATACTGTGCAGCCTGACATCAGAGCAGGAGCCATGTGAGGAAGGAGGCTTTTTGCAGAGGTTCCACCCACATCCTGATATTCAAgtgactcaaagaggggagatatgggttcagcctctcaaacccggcagccc #### Myrf_ID2723_14 --> 2 - 0 Original Alignment gtGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcttggcaaggtagagtcctggttccaaagtgttgcccttacttccgcaggtATCATTGCCCGGGAGGTGAAGGTGATTCTGCCTGAAGCTGTGGAGGACACAGGGGATGTTGTTTTCACAAATGGAAAAAGTATAAAGAACTTCCTAGTAGTGAACAAAgtaagtttataggatctgcaacttgggcatggaatctggaatctagctgt Alignment from CESAR gtGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcttggcaaggtagagtcctggttccaaagtgttgcccttacttccgcaggtATCATTGCCCGGGAGGTGAAGGTGATTCTGCCTGAAGCTGTGGAGGACACAGGGGATGTTGTTTTCACAAATGGAAAAAGTATAAAGAACTTCCTAGTAGTGAACAAAgtaagtttataggatctgcaacttgggcatggaatctggaatctagctgt Alignment from Spaln_aa2Genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcttggcaaggtagagtcctggttccaaagtgttgcccttacttccgcagGTATCATTGCCCGGGAGGTGAAGGTGATTCTGCCTGAAGCTGTGGAGGACACAGGGGATGTTGTTTTCACAAATGGAAAAAGTATAAAGAACTTCCTAGTAGTGAACAAAgtaagtttataggatctgcaacttgggcatggaatctggaatctagctgt Alignment from Spaln_nt2Genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcttggcaaggtagagtcctggttccaaagtgttgcccttacttccgcagGTATCATTGCCCGGGAGGTGAAGGTGATTCTGCCTGAAGCTGTGGAGGACACAGGGGATGTTGTTTTCACAAATGGAAAAAGTATAAAGAACTTCCTAGTAGTGAACAAAgtaagtttataggatctgcaacttgggcatggaatctggaatctagctgt Alignment from Pairagon GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcttggcaaggtagagtcctggttccaaagtgttgcccttacttccgcagGTATCATTGCCCGGGAGGTGAAGGTGATTCTGCCTGAAGCTGTGGAGGACACAGGGGATGTTGTTTTCACAAATGGAAAAAGTATAAAGAACTTCCTAGTAGTGAACAAAgtaagtttataggatctgcaacttgggcatggaatctggaatctagctgt Alignment from Exonerate_protein2genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcttggcaaggtagagtcctggttccaaagtgttgcccttacttccgcagGTATCATTGCCCGGGAGGTGAAGGTGATTCTGCCTGAAGCTGTGGAGGACACAGGGGATGTTGTTTTCACAAATGGAAAAAGTATAAAGAACTTCCTAGTAGTGAACAAAgtaagtttataggatctgcaacttgggcatggaatctggaatctagctgt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG gcttggcaaggtagagtcctggttccaaagtgttgcccttacttccgcagGTATCATTGCCCGGGAGGTGAAGGTGATTCTGCCTGAAGCTGTGGAGGACACAGGGGATGTTGTTTTCACAAATGGAAAAAGTATAAAGAACTTCCTAGTAGTGAACAAAgtaagtttataggatctgcaacttgggcatggaatctggaatctagctgt #### Myrf_ID2725_12 --> 0 - 0 Original Alignment GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG agataattgactcaccatgtttgagatatttttggtctcattttatatagGCCTCTAACCCAGGGCCATTG---AGTGATAGTGACGTGTTATGGCAACGGGCACAGCTA---GATACAGTTTTTCACCCTGGCCGTGTGGGTATTAACTCTGAGTTGCCTGATGATGCATTAGTTGTACATGGAAATGTGAAGGTAATGGGTTCCCTTATGCACCTTTCTGATCTGCAGGCCAAGGACCACGTGCAGGAGgtactgtgtgcagtagatgcacctgcatacatgggttgtgtggagtagta Alignment from CESAR GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG agataattgactcaccatgtttgagatatttttggtctcattttatatagGCCTCTAACCCAGGGCCATTG---AGTGATAGTGACGTGTTATGGCAACGGGCACAGCTA---GATACAGTTTTTCACCCTGGCCGTGTGGGTATTAACTCTGAGTTGCCTGATGATGCATTAGTTGTACATGGAAATGTGAAGGTAATGGGTTCCCTTATGCACCTTTCTGATCTGCAGGCCAAGGACCACGTGCAGGAGgtactgtgtgcagtagatgcacctgcatacatgggttgtgtggagtagta Alignment from Spaln_aa2Genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG agataattgactcaccatgtttgagatatttttggtctcattttatatagGCCTCTAACCCAGGGCCATTG---AGTGATAGTGACGTGTTATGGCAACGGGCACAGCTA---GATACAGTTTTTCACCCTGGCCGTGTGGGTATTAACTCTGAGTTGCCTGATGATGCATTAGTTGTACATGGAAATGTGAAGGTAATGGGTTCCCTTATGCACCTTTCTGATCTGCAGGCCAAGGACCACGTGCAGGAGgtactgtgtgcagtagatgcacctgcatacatgggttgtgtggagtagta Alignment from Spaln_nt2Genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG agataattgactcaccatgtttgagatatttttggtctcattttatatagGCCTCTAACCCAGGGCCATT---GAGTGATAGTGACGTGTTATGGCAACGGGCACAGCT---AGATACAGTTTTTCACCCTGGCCGTGTGGGTATTAACTCTGAGTTGCCTGATGATGCATTAGTTGTACATGGAAATGTGAAGGTAATGGGTTCCCTTATGCACCTTTCTGATCTGCAGGCCAAGGACCACGTGCAGGAGgtactgtgtgcagtagatgcacctgcatacatgggttgtgtggagtagta Alignment from Pairagon GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG agataattgactcaccatgtttgagatatttttggtctcattttatatagGCCTCTAACCCAGGGCCATT---GAGTGATAGTGACGTGTTATGGCAACGGGCACAGCT---AGATACAGTTTTTCACCCTGGCCGTGTGGGTATTAACTCTGAGTTGCCTGATGATGCATTAGTTGTACATGGAAATGTGAAGGTAATGGGTTCCCTTATGCACCTTTCTGATCTGCAGGCCAAGGACCACGTGCAGGAGgtactgtgtgcagtagatgcacctgcatacatgggttgtgtggagtagta Alignment from Exonerate_protein2genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG agataattgactcaccatgtttgagatatttttggtctcattttatatagGCCTCTAACCCAGGGCCATTG---AGTGATAGTGACGTGTTATGGCAACGGGCACAGCTA---GATACAGTTTTTCACCCTGGCCGTGTGGGTATTAACTCTGAGTTGCCTGATGATGCATTAGTTGTACATGGAAATGTGAAGGTAATGGGTTCCCTTATGCACCTTTCTGATCTGCAGGCCAAGGACCACGTGCAGGAGgtactgtgtgcagtagatgcacctgcatacatgggttgtgtggagtagta Alignment from Exonerate_coding2genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG agataattgactcaccatgtttgagatatttttggtctcattttatatagGCCTCTAACCCAGGGCCATTG---AGTGATAGTGACGTGTTATGGCAACGGGCACAGCTA---GATACAGTTTTTCACCCTGGCCGTGTGGGTATTAACTCTGAGTTGCCTGATGATGCATTAGTTGTACATGGAAATGTGAAGGTAATGGGTTCCCTTATGCACCTTTCTGATCTGCAGGCCAAGGACCACGTGCAGGAGgtactgtgtgcagtagatgcacctgcatacatgggttgtgtggagtagta Alignment from GeneWise GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG agataattgactcaccatgtttgagatatttttggtctcattttatatagGCCTCTAACCCAGGGCCATTG---AGTGATAGTGACGTGTTATGGCAACGGGCACAGCTA---GATACAGTTTTTCACCCTGGCCGTGTGGGTATTAACTCTGAGTTGCCTGATGATGCATTAGTTGTACATGGAAATGTGAAGGTAATGGGTTCCCTTATGCACCTTTCTGATCTGCAGGCCAAGGACCACGTGCAGGAGgtactgtgtgcagtagatgcacctgcatacatgggttgtgtggagtagta #### Myrf_ID2731_7 --> 2 - 2 Original Alignment gcCTCCTGCAGGACAGTGACAGCCTCAGTGGCTCCTATTTGGACCCCAACTACCAATCCATCAAATGGCAGCCGCATCAGCAGAACAAGTGGGCGACCCTGTATGACGCTAACTACAAGGAGct gtagactggataaccatgcagatttagtttcctgtttttacatcctataggtCTCCTGCAGGACAGTGACAGCCTTAGTGGCTCCTATTTGGACCCCAACTACCAATCAATCAAATGGCAGCCACATCAGCAGAACAAGTGGGCAACCCTATATGATGCCAACTACAAGGAGctgtgagtggcccatgtgtcccacatgaatggtgatggagcccatgtcttta Alignment from CESAR gcCTCCTGCAGGACAGTGACAGCCTCAGTGGCTCCTATTTGGACCCCAACTACCAATCCATCAAATGGCAGCCGCATCAGCAGAACAAGTGGGCGACCCTGTATGACGCTAACTACAAGGAGct gtagactggataaccatgcagatttagtttcctgtttttacatcctataggtCTCCTGCAGGACAGTGACAGCCTTAGTGGCTCCTATTTGGACCCCAACTACCAATCAATCAAATGGCAGCCACATCAGCAGAACAAGTGGGCAACCCTATATGATGCCAACTACAAGGAGctgtgagtggcccatgtgtcccacatgaatggtgatggagcccatgtcttta Alignment from Spaln_aa2Genome GCCTCCTGCAGGACAGTGACAGCCTCAGTGGCTCCTATTTGGACCCCAACTACCAATCCATCAAATGGCAGCCGCATCAGCAGAACAAGTGGGCGACCCTGTATGACGCTAACTACAAGGAGCT gtagactggataaccatgcagatttagtttcctgtttttacatcctatagGTCTCCTGCAGGACAGTGACAGCCTTAGTGGCTCCTATTTGGACCCCAACTACCAATCAATCAAATGGCAGCCACATCAGCAGAACAAGTGGGCAACCCTATATGATGCCAACTACAAGGAGCTgtgagtggcccatgtgtcccacatgaatggtgatggagcccatgtcttta Alignment from Spaln_nt2Genome GCCTCCTGCAGGACAGTGACAGCCTCAGTGGCTCCTATTTGGACCCCAACTACCAATCCATCAAATGGCAGCCGCATCAGCAGAACAAGTGGGCGACCCTGTATGACGCTAACTACAAGGAGCT gtagactggataaccatgcagatttagtttcctgtttttacatcctatagGTCTCCTGCAGGACAGTGACAGCCTTAGTGGCTCCTATTTGGACCCCAACTACCAATCAATCAAATGGCAGCCACATCAGCAGAACAAGTGGGCAACCCTATATGATGCCAACTACAAGGAGCTgtgagtggcccatgtgtcccacatgaatggtgatggagcccatgtcttta Alignment from Pairagon ------------------------------------------------AGGCCTCCTGCAGGACAGTGACAGCCTCAGTGGCTCCTATTTGGACCCCAACTACCAATCCATCAAATGGCAGCCGCATCAGCAGAACAAGTGGGCGACCCTGTATGACGCTAACTACAAGGAGCT GTAGACTGGATAACCATGCAGATTTAGTTTCCTGTTTTTACATCCTATAGGTCTCCTGCAGGACAGTGACAGCCTTAGTGGCTCCTATTTGGACCCCAACTACCAATCAATCAAATGGCAGCCACATCAGCAGAACAAGTGGGCAACCCTATATGATGCCAACTACAAGGAGCTgtgagtggcccatgtgtcccacatgaatggtgatggagcccatgtcttta Alignment from Exonerate_protein2genome GCCTCCTGCAGGACAGTGACAGCCTCAGTGGCTCCTATTTGGACCCCAACTACCAATCCATCAAATGGCAGCCGCATCAGCAGAACAAGTGGGCGACCCTGTATGACGCTAACTACAAGGAGCT gtagactggataaccatgcagatttagtttcctgtttttacatcctatagGTCTCCTGCAGGACAGTGACAGCCTTAGTGGCTCCTATTTGGACCCCAACTACCAATCAATCAAATGGCAGCCACATCAGCAGAACAAGTGGGCAACCCTATATGATGCCAACTACAAGGAGCTgtgagtggcccatgtgtcccacatgaatggtgatggagcccatgtcttta Alignment from Exonerate_coding2genome GCCTCCTGCAGGACAGTGACAGCCTCAGTGGCTCCTATTTGGACCCCAACTACCAATCCATCAAATGGCAGCCGCATCAGCAGAACAAGTGGGCGACCCTGTATGACGCTAACTACAAGGAGCT gtagactggataaccatgcagatttagtttcctgtttttacatcctatagGTCTCCTGCAGGACAGTGACAGCCTTAGTGGCTCCTATTTGGACCCCAACTACCAATCAATCAAATGGCAGCCACATCAGCAGAACAAGTGGGCAACCCTATATGATGCCAACTACAAGGAGCTgtgagtggcccatgtgtcccacatgaatggtgatggagcccatgtcttta Alignment from GeneWise GCCTCCTGCAGGACAGTGACAGCCTCAGTGGCTCCTATTTGGACCCCAACTACCAATCCATCAAATGGCAGCCGCATCAGCAGAACAAGTGGGCGACCCTGTATGACGCTAACTACAAGGAGCT gtagactggataaccatgcagatttagtttcctgtttttacatcctatagGTCTCCTGCAGGACAGTGACAGCCTTAGTGGCTCCTATTTGGACCCCAACTACCAATCAATCAAATGGCAGCCACATCAGCAGAACAAGTGGGCAACCCTATATGATGCCAACTACAAGGAGCTgtgagtggcccatgtgtcccacatgaatggtgatggagcccatgtcttta #### Myrf_ID2733_5 --> 2 - 2 Original Alignment acCCCCATCTTCTACGCACCATAACCCCGGAGACTCTATGCCACGTGGGAGTTTCTTCCCGCCTGGAGCACCCGCCCCCACCTCCAGCCCACCTGCCAGGCCCACCACCACCGCCACCTCCCCCACCTCACTACCCTGTCCTGCAACGGGACCTCTACATGAAGGCTGAGCCCCCTGTACCCCCTTATGCTGCCATGGGGCCGGGTCTGGTGCCCCCCGAGCTCCATCACACCCAGCAGACCCAGGTGCTACACCAGCTGCTGCAACAGCATGGAGCTga atggacttagaaaggttgtcaccccacacaccctttccccctttctttagatCCACATCTACTTCATGCTATGACTTTGGAAACTCTCTGTCATGTGGGGATTTCTTCTCGGCTGGAGCACCTGCCCCCACCTCCAGCCCATCTGCCAGGGCCACCTCCACCACCTCCCCCACCACCTCATTACCCAGTCCTACAGCGAGACCTCTATATGGAGGCTGAGCCTCCTGTACCCCCTTATGCTGCCATGGGGCCAGGTCTGGTGCCTCCTGAGCTGCGTCATACCCGTCAAACCCAGGTGCTACACCAATTACTGCAGCAGCATGGGGCTcagtgagttctaggtagaagatctatagaggccccttggaatcaaggaagag Alignment from CESAR acCCCCATCTTCTACGCACCATAACCCCGGAGACTCTATGCCACGTGGGAGTTTCTTCCCGCCTGGAGCACCCGCCCCCACCTCCAGCCCACCTGCCAGGCCCACCACCACCGCCACCTCCCCCACCTCACTACCCTGTCCTGCAACGGGACCTCTACATGAAGGCTGAGCCCCCTGTACCCCCTTATGCTGCCATGGGGCCGGGTCTGGTGCCCCCCGAGCTCCATCACACCCAGCAGACCCAGGTGCTACACCAGCTGCTGCAACAGCATGGAGCTga atggacttagaaaggttgtcaccccacacaccctttccccctttctttagatCCACATCTACTTCATGCTATGACTTTGGAAACTCTCTGTCATGTGGGGATTTCTTCTCGGCTGGAGCACCTGCCCCCACCTCCAGCCCATCTGCCAGGGCCACCTCCACCACCTCCCCCACCACCTCATTACCCAGTCCTACAGCGAGACCTCTATATGGAGGCTGAGCCTCCTGTACCCCCTTATGCTGCCATGGGGCCAGGTCTGGTGCCTCCTGAGCTGCGTCATACCCGTCAAACCCAGGTGCTACACCAATTACTGCAGCAGCATGGGGCTcagtgagttctaggtagaagatctatagaggccccttggaatcaaggaagag Alignment from Spaln_aa2Genome ACCCCCATCTTCTACGCACCATAACCCCGGAGACTCTATGCCACGTGGGAGTTTCTTCCCGCCTGGAGCACCCGCCCCCACCTCCAGCCCACCTGCCAGGCCCACCACCACCGCCACCTCCCCCACCTCACTACCCTGTCCTGCAACGGGACCTCTACATGAAGGCTGAGCCCCCTGTACCCCCTTATGCTGCCATGGGGCCGGGTCTGGTGCCCCCCGAGCTCCATCACACCCAGCAGACCCAGGTGCTACACCAGCTGCTGCAACAGCATGGAGCTGA atggacttagaaaggttgtcaccccacacaccctttccccctttctttagATCCACATCTACTTCATGCTATGACTTTGGAAACTCTCTGTCATGTGGGGATTTCTTCTCGGCTGGAGCACCTGCCCCCACCTCCAGCCCATCTGCCAGGGCCACCTCCACCACCTCCCCCACCACCTCATTACCCAGTCCTACAGCGAGACCTCTATATGGAGGCTGAGCCTCCTGTACCCCCTTATGCTGCCATGGGGCCAGGTCTGGTGCCTCCTGAGCTGCGTCATACCCGTCAAACCCAGGTGCTACACCAATTACTGCAGCAGCATGGGGCTCAgtgagttctaggtagaagatctatagaggccccttggaatcaaggaagag Alignment from Spaln_nt2Genome ACCCCCATCTTCTACGCACCATAACCCCGGAGACTCTATGCCACGTGGGAGTTTCTTCCCGCCTGGAGCACCCGCCCCCACCTCCAGCCCACCTGCCAGGCCCACCACCACCGCCACCTCCCCCACCTCACTACCCTGTCCTGCAACGGGACCTCTACATGAAGGCTGAGCCCCCTGTACCCCCTTATGCTGCCATGGGGCCGGGTCTGGTGCCCCCCGAGCTCCATCACACCCAGCAGACCCAGGTGCTACACCAGCTGCTGCAACAGCATGGAGCTGA atggacttagaaaggttgtcaccccacacaccctttccccctttctttagATCCACATCTACTTCATGCTATGACTTTGGAAACTCTCTGTCATGTGGGGATTTCTTCTCGGCTGGAGCACCTGCCCCCACCTCCAGCCCATCTGCCAGGGCCACCTCCACCACCTCCCCCACCACCTCATTACCCAGTCCTACAGCGAGACCTCTATATGGAGGCTGAGCCTCCTGTACCCCCTTATGCTGCCATGGGGCCAGGTCTGGTGCCTCCTGAGCTGCGTCATACCCGTCAAACCCAGGTGCTACACCAATTACTGCAGCAGCATGGGGCTCAgtgagttctaggtagaagatctatagaggccccttggaatcaaggaagag Alignment from Pairagon ACCCCCATCTTCTACGCACCATAACCCCGGAGACTCTATGCCACGTGGGAGTTTCTTCCCGCCTGGAGCACCCGCCCCCACCTCCAGCCCACCTGCCAGGCCCACCACCACCGCCACCTCCCCCACCTCACTACCCTGTCCTGCAACGGGACCTCTACATGAAGGCTGAGCCCCCTGTACCCCCTTATGCTGCCATGGGGCCGGGTCTGGTGCCCCCCGAGCTCCATCACACCCAGCAGACCCAGGTGCTACACCAGCTGCTGCAACAGCATGGAGCTGA atggacttagaaaggttgtcaccccacacaccctttccccctttctttagATCCACATCTACTTCATGCTATGACTTTGGAAACTCTCTGTCATGTGGGGATTTCTTCTCGGCTGGAGCACCTGCCCCCACCTCCAGCCCATCTGCCAGGGCCACCTCCACCACCTCCCCCACCACCTCATTACCCAGTCCTACAGCGAGACCTCTATATGGAGGCTGAGCCTCCTGTACCCCCTTATGCTGCCATGGGGCCAGGTCTGGTGCCTCCTGAGCTGCGTCATACCCGTCAAACCCAGGTGCTACACCAATTACTGCAGCAGCATGGGGCTCAgtgagttctaggtagaagatctatagaggccccttggaatcaaggaagag Alignment from Exonerate_protein2genome ACCCCCATCTTCTACGCACCATAACCCCGGAGACTCTATGCCACGTGGGAGTTTCTTCCCGCCTGGAGCACCCGCCCCCACCTCCAGCCCACCTGCCAGGCCCACCACCACCGCCACCTCCCCCACCTCACTACCCTGTCCTGCAACGGGACCTCTACATGAAGGCTGAGCCCCCTGTACCCCCTTATGCTGCCATGGGGCCGGGTCTGGTGCCCCCCGAGCTCCATCACACCCAGCAGACCCAGGTGCTACACCAGCTGCTGCAACAGCATGGAGCTGA atggacttagaaaggttgtcaccccacacaccctttccccctttctttagATCCACATCTACTTCATGCTATGACTTTGGAAACTCTCTGTCATGTGGGGATTTCTTCTCGGCTGGAGCACCTGCCCCCACCTCCAGCCCATCTGCCAGGGCCACCTCCACCACCTCCCCCACCACCTCATTACCCAGTCCTACAGCGAGACCTCTATATGGAGGCTGAGCCTCCTGTACCCCCTTATGCTGCCATGGGGCCAGGTCTGGTGCCTCCTGAGCTGCGTCATACCCGTCAAACCCAGGTGCTACACCAATTACTGCAGCAGCATGGGGCTCAgtgagttctaggtagaagatctatagaggccccttggaatcaaggaagag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ACCCCCATCTTCTACGCACCATAACCCCGGAGACTCTATGCCACGTGGGAGTTTCTTCCCGCCTGGAGCACCCGCCCCCACCTCCAGCCCACCTGCCAGGCCCACCACCACCGCCACCTCCCCCACCTCACTACCCTGTCCTGCAACGGGACCTCTACATGAAGGCTGAGCCCCCTGTACCCCCTTATGCTGCCATGGGGCCGGGTCTGGTGCCCCCCGAGCTCCATCACACCCAGCAGACCCAGGTGCTACACCAGCTGCTGCAACAGCATGGAGCTGA atggacttagaaaggttgtcaccccacacaccctttccccctttctttagATCCACATCTACTTCATGCTATGACTTTGGAAACTCTCTGTCATGTGGGGATTTCTTCTCGGCTGGAGCACCTGCCCCCACCTCCAGCCCATCTGCCAGGGCCACCTCCACCACCTCCCCCACCACCTCATTACCCAGTCCTACAGCGAGACCTCTATATGGAGGCTGAGCCTCCTGTACCCCCTTATGCTGCCATGGGGCCAGGTCTGGTGCCTCCTGAGCTGCGTCATACCCGTCAAACCCAGGTGCTACACCAATTACTGCAGCAGCATGGGGCTCAgtgagttctaggtagaagatctatagaggccccttggaatcaaggaagag #### Naa40_ID2075_5 --> 1 - 2 Original Alignment gTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACtg aatcagatctagggggcagtctacttatctgtaactcttgtgccttgcaggTACGAACAAAGTGAATGGGGCTGGAAGGACCGGCAAAAACGAGAGGAGATGACTGATGATCATGCCTGGTACCTCATTGCATGGGAAAACAGTTCCATCCCAGTTGCCTTCTCTCACTTCCGATTTGATGTGGAGTGTGGGGACGAGGTCTTATATtggtgagcgacttttgcctatggtataggaggttatgccgttggtagagtag Alignment from CESAR gTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACtg aatcagatctagggggcagtctacttatctgtaactcttgtgccttgcaggTACGAACAAAGTGAATGGGGCTGGAAGGACCGGCAAAAACGAGAGGAGATGACTGATGATCATGCCTGGTACCTCATTGCATGGGAAAACAGTTCCATCCCAGTTGCCTTCTCTCACTTCCGATTTGATGTGGAGTGTGGGGACGAGGTCTTATATtggtgagcgacttttgcctatggtataggaggttatgccgttggtagagtag Alignment from Spaln_aa2Genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG aatcagatctagggggcagtctacttatctgtaactcttgtgccttgcagGTACGAACAAAGTGAATGGGGCTGGAAGGACCGGCAAAAACGAGAGGAGATGACTGATGATCATGCCTGGTACCTCATTGCATGGGAAAACAGTTCCATCCCAGTTGCCTTCTCTCACTTCCGATTTGATGTGGAGTGTGGGGACGAGGTCTTATATTGgtgagcgacttttgcctatggtataggaggttatgccgttggtagagtag Alignment from Spaln_nt2Genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG aatcagatctagggggcagtctacttatctgtaactcttgtgccttgcagGTACGAACAAAGTGAATGGGGCTGGAAGGACCGGCAAAAACGAGAGGAGATGACTGATGATCATGCCTGGTACCTCATTGCATGGGAAAACAGTTCCATCCCAGTTGCCTTCTCTCACTTCCGATTTGATGTGGAGTGTGGGGACGAGGTCTTATATTGgtgagcgacttttgcctatggtataggaggttatgccgttggtagagtag Alignment from Pairagon GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG aatcagatctagggggcagtctacttatctgtaactcttgtgccttgcagGTACGAACAAAGTGAATGGGGCTGGAAGGACCGGCAAAAACGAGAGGAGATGACTGATGATCATGCCTGGTACCTCATTGCATGGGAAAACAGTTCCATCCCAGTTGCCTTCTCTCACTTCCGATTTGATGTGGAGTGTGGGGACGAGGTCTTATATTGgtgagcgacttttgcctatggtataggaggttatgccgttggtagagtag Alignment from Exonerate_protein2genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG aatcagatctagggggcagtctacttatctgtaactcttgtgccttgcagGTACGAACAAAGTGAATGGGGCTGGAAGGACCGGCAAAAACGAGAGGAGATGACTGATGATCATGCCTGGTACCTCATTGCATGGGAAAACAGTTCCATCCCAGTTGCCTTCTCTCACTTCCGATTTGATGTGGAGTGTGGGGACGAGGTCTTATATTGgtgagcgacttttgcctatggtataggaggttatgccgttggtagagtag Alignment from Exonerate_coding2genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG aatcagatctagggggcagtctacttatctgtaactcttgtgccttgcagGTACGAACAAAGTGAATGGGGCTGGAAGGACCGGCAAAAACGAGAGGAGATGACTGATGATCATGCCTGGTACCTCATTGCATGGGAAAACAGTTCCATCCCAGTTGCCTTCTCTCACTTCCGATTTGATGTGGAGTGTGGGGACGAGGTCTTATATTGgtgagcgacttttgcctatggtataggaggttatgccgttggtagagtag Alignment from GeneWise GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATGACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG aatcagatctagggggcagtctacttatctgtaactcttgtgccttgcagGTACGAACAAAGTGAATGGGGCTGGAAGGACCGGCAAAAACGAGAGGAGATGACTGATGATCATGCCTGGTACCTCATTGCATGGGAAAACAGTTCCATCCCAGTTGCCTTCTCTCACTTCCGATTTGATGTGGAGTGTGGGGACGAGGTCTTATATTGgtgagcgacttttgcctatggtataggaggttatgccgttggtagagtag #### Naaladl1_ID1443_2 --> 1 - 1 Original Alignment aGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCg acactgttaaagtttctattctcctgcatttgctttttgtttttacttagaGAGCTTGCAAAAGAACCACATGTTGCCACCAGTACTCGAGATGATGCCCTGGTTCAGCTGCTGTTGGCACGCTGGAAGGATACAGCACCAGGATTGGACTCAGCCAAGACCTATGAATATCGGGTGTTGCTTGCGTTCCCTAATGCA---GAGGCTAACAGTGTGGAAGTTggtaagcgtcagaagtctccaggcaggatgctcattatttctttgtttctc Alignment from CESAR aGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCg acactgttaaagtttctattctcctgcatttgctttttgtttttacttagaGAGCTTGCAAAAGAACCACATGTTGCCACCAGTACTCGAGATGATGCCCTGGTTCAGCTGCTGTTGGCACGCTGGAAGGATACAGCACCAGGATTGGACTCAGCCAAGACCTATGAATATCGGGTGTTGCTTGCGTTCCCTAATGCAGAG---GCTAACAGTGTGGAAGTTggtaagcgtcagaagtctccaggcaggatgccttctacgttctgtccattg Alignment from Spaln_aa2Genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG acactgttaaagtttctattctcctgcatttgctttttgtttttacttagAGAGCTTGCAAAAGAACCACATGTTGCCACCAGTACTCGAGATGATGCCCTGGTTCAGCTGCTGTTGGCACGCTGGAAGGATACAGCACCAGGATTGGACTCAGCCAAGACCTATGAATATCGGGTGTTGCTTGCGTTCCCTAATGCAGAG---GCTAACAGTGTGGAAGTTGgtaagcgtcagaagtctccaggcaggatgctcattatttctttgtttctc Alignment from Spaln_nt2Genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG acactgttaaagtttctattctcctgcatttgctttttgtttttacttagAGAGCTTGCAAAAGAACCACATGTTGCCACCAGTACTCGAGATGATGCCCTGGTTCAGCTGCTGTTGGCACGCTGGAAGGATACAGCACCAGGATTGGACTCAGCCAAGACCTATGAATATCGGGTGTTGCTTGCGTTCCCTAATGCAG---AGGCTAACAGTGTGGAAGTTGgtaagcgtcagaagtctccaggcaggatgctcattatttctttgtttctc Alignment from Pairagon AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG acactgttaaagtttctattctcctgcatttgctttttgtttttacttagAGAGCTTGCAAAAGAACCACATGTTGCCACCAGTACTCGAGATGATGCCCTGGTTCAGCTGCTGTTGGCACGCTGGAAGGATACAGCACCAGGATTGGACTCAGCCAAGACCTATGAATATCGGGTGTTGCTTGCGTTCCCTAATGCAGAGG---CTAACAGTGTGGAAGTTGgtaagcgtcagaagtctccaggcaggatgctcattatttctttgtttctc Alignment from Exonerate_protein2genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG acactgttaaagtttctattctcctgcatttgctttttgtttttacttagAGAGCTTGCAAAAGAACCACATGTTGCCACCAGTACTCGAGATGATGCCCTGGTTCAGCTGCTGTTGGCACGCTGGAAGGATACAGCACCAGGATTGGACTCAGCCAAGACCTATGAATATCGGGTGTTGCTTGCGTTCCCTAATGCAGAG---GCTAACAGTGTGGAAGTTGgtaagcgtcagaagtctccaggcaggatgctcattatttctttgtttctc Alignment from Exonerate_coding2genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG acactgttaaagtttctattctcctgcatttgctttttgtttttacttagAGAGCTTGCAAAAGAACCACATGTTGCCACCAGTACTCGAGATGATGCCCTGGTTCAGCTGCTGTTGGCACGCTGGAAGGATACAGCACCAGGATTGGACTCAGCCAAGACCTATGAATATCGGGTGTTGCTTGCGTTCCCTAATGCAGAG---GCTAACAGTGTGGAAGTTGgtaagcgtcagaagtctccaggcaggatgctcattatttctttgtttctc Alignment from GeneWise AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG acactgttaaagtttctattctcctgcatttgctttttgtttttacttagAGAGCTTGCAAAAGAACCACATGTTGCCACCAGTACTCGAGATGATGCCCTGGTTCAGCTGCTGTTGGCACGCTGGAAGGATACAGCACCAGGATTGGACTCAGCCAAGACCTATGAATATCGGGTGTTGCTTGCGTTCCCTAATGCAGAGGCT---AACAGTGTGGAAGTTGgtaagcgtcagaagtctccaggcaggatgctcattatttctttgtttctc #### Naaladl1_ID1451_10 --> 0 - 1 Original Alignment GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCt cctgtagggtcaaggctagtgtgggaaattgttttttttttttcccacagGAATCACTCAGCAAACTGCAGGAGCATACAGTCGACTACATCAATGTTGACATCTCTGTTTTTtgtgacttataattggtcagctgagctcagatccaccctaaagttctggta Alignment from CESAR GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCt cctgtagggtcaaggctagtgtgggaaattgttttttttttttcccacagGAATCACTCAGCAAACTGCAGGAGCATACAGTCGACTACATCAATGTTGACATCTCTGTTTTTtgtgacttataattggtcagctgagctcagatccaccctaaagttctggta Alignment from Spaln_aa2Genome GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCT cctgtagggtcaaggctagtgtgggaaattgttttttttttttcccacagGAATCACTCAGCAAACTGCAGGAGCATACAGTCGACTACATCAATGTTGACATCTCTGTTTTTTgtgacttataattggtcagctgagctcagatccaccctaaagttctggta Alignment from Spaln_nt2Genome GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCT cctgtagggtcaaggctagtgtgggaaattgttttttttttttcccacagGAATCACTCAGCAAACTGCAGGAGCATACAGTCGACTACATCAATGTTGACATCTCTGTTTTTTgtgacttataattggtcagctgagctcagatccaccctaaagttctggta Alignment from Pairagon GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCT cctgtagggtcaaggctagtgtgggaaattgttttttttttttcccacagGAATCACTCAGCAAACTGCAGGAGCATACAGTCGACTACATCAATGTTGACATCTCTGTTTTTTgtgacttataattggtcagctgagctcagatccaccctaaagttctggta Alignment from Exonerate_protein2genome GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCT cctgtagggtcaaggctagtgtgggaaattgttttttttttttcccacagGAATCACTCAGCAAACTGCAGGAGCATACAGTCGACTACATCAATGTTGACATCTCTGTTTTTTgtgacttataattggtcagctgagctcagatccaccctaaagttctggta Alignment from Exonerate_coding2genome GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCT cctgtagggtcaaggctagtgtgggaaattgttttttttttttcccacagGAATCACTCAGCAAACTGCAGGAGCATACAGTCGACTACATCAATGTTGACATCTCTGTTTTTTgtgacttataattggtcagctgagctcagatccaccctaaagttctggta Alignment from GeneWise GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCT cctgtagggtcaaggctagtgtgggaaattgttttttttttttcccacagGAATCACTCAGCAAACTGCAGGAGCATACAGTCGACTACATCAATGTTGACATCTCTGTTTTTTgtgacttataattggtcagctgagctcagatccaccctaaagttctggta #### Naaladl1_ID1453_12 --> 0 - 2 Original Alignment ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCag tgaatttgctagtcattcaccagtggcattgacttttctttcccctgcagATCAGTGCACCAGGATCCAGTGGTCTCAGGATCTATGATAATTGGATACGATATACTAACCGTGTGAGTCCAGTATACGGGCTGGTCCCAaggtgagttcagattaagatccagagagactctttttacaatcttattttgc Alignment from CESAR ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCag tgaatttgctagtcattcaccagtggcattgacttttctttcccctgcagATCAGTGCACCAGGATCCAGTGGTCTCAGGATCTATGATAATTGGATACGATATACTAACCGTGTGAGTCCAGTATACGGGCTGGTCCCAaggtgagttcagattaagatccagagagactctttttacactgtctcttccc Alignment from Spaln_aa2Genome ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG tgaatttgctagtcattcaccagtggcattgacttttctttcccctgcagATCAGTGCACCAGGATCCAGTGGTCTCAGGATCTATGATAATTGGATACGATATACTAACCGTGTGAGTCCAGTATACGGGCTGGTCCCAAGgtgagttcagattaagatccagagagactctttttacaatcttattttgc Alignment from Spaln_nt2Genome ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG tgaatttgctagtcattcaccagtggcattgacttttctttcccctgcagATCAGTGCACCAGGATCCAGTGGTCTCAGGATCTATGATAATTGGATACGATATACTAACCGTGTGAGTCCAGTATACGGGCTGGTCCCAAGgtgagttcagattaagatccagagagactctttttacaatcttattttgc Alignment from Pairagon ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG tgaatttgctagtcattcaccagtggcattgacttttctttcccctgcagATCAGTGCACCAGGATCCAGTGGTCTCAGGATCTATGATAATTGGATACGATATACTAACCGTGTGAGTCCAGTATACGGGCTGGTCCCAAGgtgagttcagattaagatccagagagactctttttacaatcttattttgc Alignment from Exonerate_protein2genome ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG tgaatttgctagtcattcaccagtggcattgacttttctttcccctgcagATCAGTGCACCAGGATCCAGTGGTCTCAGGATCTATGATAATTGGATACGATATACTAACCGTGTGAGTCCAGTATACGGGCTGGTCCCAAGgtgagttcagattaagatccagagagactctttttacaatcttattttgc Alignment from Exonerate_coding2genome ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG tgaatttgctagtcattcaccagtggcattgacttttctttcccctgcagATCAGTGCACCAGGATCCAGTGGTCTCAGGATCTATGATAATTGGATACGATATACTAACCGTGTGAGTCCAGTATACGGGCTGGTCCCAAGgtgagttcagattaagatccagagagactctttttacaatcttattttgc Alignment from GeneWise ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG tgaatttgctagtcattcaccagtggcattgacttttctttcccctgcagATCAGTGCACCAGGATCCAGTGGTCTCAGGATCTATGATAATTGGATACGATATACTAACCGTGTGAGTCCAGTATACGGGCTGGTCCCAAGgtgagttcagattaagatccagagagactctttttacaatcttattttgc #### Naaladl1_ID1457_16 --> 2 - 2 Original Alignment Gg ggCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTga GggtatggcccaacatcttgaggcagtgaaactttcctcatctttttcaggaCCTTTGGTAACGGCTGTAGCAAACTTTAAGGCTTCTGCTGCCTCACTGGGAGAAGACATCCTGACCCTAGGCGAGAGCAGCCCTgagtaagggccagcagaggacatgtctcaccaggtatacacgggggaggtac Alignment from CESAR Gg ggCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTga GggtatgacccaacatcttgaggcagtgaaactttcctcatctttttcaggaCCTTTGGTAACGGCTGTAGCAAACTTTAAGGCTTCTGCTGCCTCACTGGGAGAAGACATCCTGACCCTAGGCGAGAGCAGCCCTgagtaagggccagcagaggacatgtctcaccaggtatacacgggggaggtac Alignment from Spaln_aa2Genome GG GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA GGgtatggcccaacatcttgaggcagtgaaactttcctcatctttttcagGACCTTTGGTAACGGCTGTAGCAAACTTTAAGGCTTCTGCTGCCTCACTGGGAGAAGACATCCTGACCCTAGGCGAGAGCAGCCCTGAgtaagggccagcagaggacatgtctcaccaggtatacacgggggaggtac Alignment from Spaln_nt2Genome GG GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA GGgtatggcccaacatcttgaggcagtgaaactttcctcatctttttcagGACCTTTGGTAACGGCTGTAGCAAACTTTAAGGCTTCTGCTGCCTCACTGGGAGAAGACATCCTGACCCTAGGCGAGAGCAGCCCTGAgtaagggccagcagaggacatgtctcaccaggtatacacgggggaggtac Alignment from Pairagon GG GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA GGgtatggcccaacatcttgaggcagtgaaactttcctcatctttttcagGACCTTTGGTAACGGCTGTAGCAAACTTTAAGGCTTCTGCTGCCTCACTGGGAGAAGACATCCTGACCCTAGGCGAGAGCAGCCCTGAgtaagggccagcagaggacatgtctcaccaggtatacacgggggaggtac Alignment from Exonerate_protein2genome GG GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA GGgtatggcccaacatcttgaggcagtgaaactttcctcatctttttcagGACCTTTGGTAACGGCTGTAGCAAACTTTAAGGCTTCTGCTGCCTCACTGGGAGAAGACATCCTGACCCTAGGCGAGAGCAGCCCTGAgtaagggccagcagaggacatgtctcaccaggtatacacgggggaggtac Alignment from Exonerate_coding2genome GG GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA GGgtatggcccaacatcttgaggcagtgaaactttcctcatctttttcagGACCTTTGGTAACGGCTGTAGCAAACTTTAAGGCTTCTGCTGCCTCACTGGGAGAAGACATCCTGACCCTAGGCGAGAGCAGCCCTGAgtaagggccagcagaggacatgtctcaccaggtatacacgggggaggtac Alignment from GeneWise G------------------------------------------------GGGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA GGGTATGGCCCAACATCTTGAGGCAGTGAAACTTTCCTCATCTTTTTCAGGACCTTTGGTAACGGCTGTAGCAAACTTTAAGGCTTCTGCTGCCTCACTGGGAGAAGACATCCTGACCCTAGGCGAGAGCAGCCCTGAgtaagggccagcagaggacatgtctcaccaggtatacacgggggaggtac #### Ndufb8_ID9057_4 --> 0 - 0 Original Alignment ATACACTGGGACCTAGACATGTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTGTGGCTTTCATGGTTTTCATGTTCTGGGTAGGGCACGTGTTCCCTTCCTACCAGCCTGTG ggtgaattgaaagagctaattgtgaccaggcactgtttatttctttgcagATACACTGGGACCTAGACATGTATATCAGGAATCGTGTAGACACCTCACCCACCCCTGTATCCTGGGATGTTATGTGTAAACATCTCTTTGGCTTTCTGGCTTTCATGGTTTTTATGTTCTGGGTGGGCCATGTGTTCCCTTCCTATCAGCCTGTTgtgatatcttcacgctctcagtatgaaatatgtgagatagccccaatatc Alignment from CESAR ATACACTGGGACCTAGACATGTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTGTGGCTTTCATGGTTTTCATGTTCTGGGTAGGGCACGTGTTCCCTTCCTACCAGCCTGTG ggtgaattgaaagagctaattgtgaccaggcactgtttatttctttgcagATACACTGGGACCTAGACATGTATATCAGGAATCGTGTAGACACCTCACCCACCCCTGTATCCTGGGATGTTATGTGTAAACATCTCTTTGGCTTTCTGGCTTTCATGGTTTTTATGTTCTGGGTGGGCCATGTGTTCCCTTCCTATCAGCCTGTTgtgatatcttcacgctctcagtatgaaatatgtgagatagccccaatatc Alignment from Spaln_aa2Genome ATACACTGGGACCTAGACATGTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTGTGGCTTTCATGGTTTTCATGTTCTGGGTAGGGCACGTGTTCCCTTCCTACCAGCCTGTG ggtgaattgaaagagctaattgtgaccaggcactgtttatttctttgcagATACACTGGGACCTAGACATGTATATCAGGAATCGTGTAGACACCTCACCCACCCCTGTATCCTGGGATGTTATGTGTAAACATCTCTTTGGCTTTCTGGCTTTCATGGTTTTTATGTTCTGGGTGGGCCATGTGTTCCCTTCCTATCAGCCTGTTgtgatatcttcacgctctcagtatgaaatatgtgagatagccccaatatc Alignment from Spaln_nt2Genome ATACACTGGGACCTAGACATGTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTGTGGCTTTCATGGTTTTCATGTTCTGGGTAGGGCACGTGTTCCCTTCCTACCAGCCTGTG ggtgaattgaaagagctaattgtgaccaggcactgtttatttctttgcagATACACTGGGACCTAGACATGTATATCAGGAATCGTGTAGACACCTCACCCACCCCTGTATCCTGGGATGTTATGTGTAAACATCTCTTTGGCTTTCTGGCTTTCATGGTTTTTATGTTCTGGGTGGGCCATGTGTTCCCTTCCTATCAGCCTGTTgtgatatcttcacgctctcagtatgaaatatgtgagatagccccaatatc Alignment from Pairagon ATACACTGGGACCTAGACATGTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTGTGGCTTTCATGGTTTTCATGTTCTGGGTAGGGCACGTGTTCCCTTCCTACCAGCCTGTG ggtgaattgaaagagctaattgtgaccaggcactgtttatttctttgcagATACACTGGGACCTAGACATGTATATCAGGAATCGTGTAGACACCTCACCCACCCCTGTATCCTGGGATGTTATGTGTAAACATCTCTTTGGCTTTCTGGCTTTCATGGTTTTTATGTTCTGGGTGGGCCATGTGTTCCCTTCCTATCAGCCTGTTgtgatatcttcacgctctcagtatgaaatatgtgagatagccccaatatc Alignment from Exonerate_protein2genome ATACACTGGGACCTAGACATGTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTGTGGCTTTCATGGTTTTCATGTTCTGGGTAGGGCACGTGTTCCCTTCCTACCAGCCTGTG ggtgaattgaaagagctaattgtgaccaggcactgtttatttctttgcagATACACTGGGACCTAGACATGTATATCAGGAATCGTGTAGACACCTCACCCACCCCTGTATCCTGGGATGTTATGTGTAAACATCTCTTTGGCTTTCTGGCTTTCATGGTTTTTATGTTCTGGGTGGGCCATGTGTTCCCTTCCTATCAGCCTGTTgtgatatcttcacgctctcagtatgaaatatgtgagatagccccaatatc Alignment from Exonerate_coding2genome ATACACTGGGACCTAGACATGTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTGTGGCTTTCATGGTTTTCATGTTCTGGGTAGGGCACGTGTTCCCTTCCTACCAGCCTGTG ggtgaattgaaagagctaattgtgaccaggcactgtttatttctttgcagATACACTGGGACCTAGACATGTATATCAGGAATCGTGTAGACACCTCACCCACCCCTGTATCCTGGGATGTTATGTGTAAACATCTCTTTGGCTTTCTGGCTTTCATGGTTTTTATGTTCTGGGTGGGCCATGTGTTCCCTTCCTATCAGCCTGTTgtgatatcttcacgctctcagtatgaaatatgtgagatagccccaatatc Alignment from GeneWise ATACACTGGGACCTAGACATGTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTGTGGCTTTCATGGTTTTCATGTTCTGGGTAGGGCACGTGTTCCCTTCCTACCAGCCTGTG ggtgaattgaaagagctaattgtgaccaggcactgtttatttctttgcagATACACTGGGACCTAGACATGTATATCAGGAATCGTGTAGACACCTCACCCACCCCTGTATCCTGGGATGTTATGTGTAAACATCTCTTTGGCTTTCTGGCTTTCATGGTTTTTATGTTCTGGGTGGGCCATGTGTTCCCTTCCTATCAGCCTGTTgtgatatcttcacgctctcagtatgaaatatgtgagatagccccaatatc #### Ndufb8_ID9059_2 --> 2 - 2 Original Alignment ccTTCCATATGACCAAGGACATGTTGCCGGGGTCATATCCTAGGACCCCAGAGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGCGAGTGGAAGACTACGAGCCATACCCCGATGATGGCATGgg tgttgtggttctggacctttaaggactatcttattctccattatttctagccTTCCATATGACCAAGGACATGGTACCAGGATCTTATCCTAGGACACCAGAGGAGCATACCACCGCCACCAGGAAGTATAACATGCGAGTAGAGGAGTATGAGCCATGCCCTGATGATGGTATGgggtgcgtatagtggctgactctgttgcttattccagagtcataggcaatgg Alignment from CESAR ccTTCCATATGACCAAGGACATGTTGCCGGGGTCATATCCTAGGACCCCAGAGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGCGAGTGGAAGACTACGAGCCATACCCCGATGATGGCATGgg tgttgtggttctggacctttaaggactatcttattctccattatttctagccTTCCATATGACCAAGGACATGGTACCAGGATCTTATCCTAGGACACCAGAGGAGCATACCACCGCCACCAGGAAGTATAACATGCGAGTAGAGGAGTATGAGCCATGCCCTGATGATGGTATGgggtgcgtatagtggctgactctgttgcttattccagagtcataggcaatgg Alignment from Spaln_aa2Genome CCTTCCATATGACCAAGGACATGTTGCCGGGGTCATATCCTAGGACCCCAGAGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGCGAGTGGAAGACTACGAGCCATACCCCGATGATGGCATGGG tgttgtggttctggacctttaaggactatcttattctccattatttctagCCTTCCATATGACCAAGGACATGGTACCAGGATCTTATCCTAGGACACCAGAGGAGCATACCACCGCCACCAGGAAGTATAACATGCGAGTAGAGGAGTATGAGCCATGCCCTGATGATGGTATGGGgtgcgtatagtggctgactctgttgcttattccagagtcataggcaatgg Alignment from Spaln_nt2Genome CCTTCCATATGACCAAGGACATGTTGCCGGGGTCATATCCTAGGACCCCAGAGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGCGAGTGGAAGACTACGAGCCATACCCCGATGATGGCATGGG tgttgtggttctggacctttaaggactatcttattctccattatttctagCCTTCCATATGACCAAGGACATGGTACCAGGATCTTATCCTAGGACACCAGAGGAGCATACCACCGCCACCAGGAAGTATAACATGCGAGTAGAGGAGTATGAGCCATGCCCTGATGATGGTATGGGgtgcgtatagtggctgactctgttgcttattccagagtcataggcaatgg Alignment from Pairagon CCTTCCATATGACCAAGGACATGTTGCCGGGGTCATATCCTAGGACCCCAGAGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGCGAGTGGAAGACTACGAGCCATACCCCGATGATGGCATGGG tgttgtggttctggacctttaaggactatcttattctccattatttctagCCTTCCATATGACCAAGGACATGGTACCAGGATCTTATCCTAGGACACCAGAGGAGCATACCACCGCCACCAGGAAGTATAACATGCGAGTAGAGGAGTATGAGCCATGCCCTGATGATGGTATGGGgtgcgtatagtggctgactctgttgcttattccagagtcataggcaatgg Alignment from Exonerate_protein2genome CCTTCCATATGACCAAGGACATGTTGCCGGGGTCATATCCTAGGACCCCAGAGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGCGAGTGGAAGACTACGAGCCATACCCCGATGATGGCATGGG tgttgtggttctggacctttaaggactatcttattctccattatttctagCCTTCCATATGACCAAGGACATGGTACCAGGATCTTATCCTAGGACACCAGAGGAGCATACCACCGCCACCAGGAAGTATAACATGCGAGTAGAGGAGTATGAGCCATGCCCTGATGATGGTATGGGgtgcgtatagtggctgactctgttgcttattccagagtcataggcaatgg Alignment from Exonerate_coding2genome CCTTCCATATGACCAAGGACATGTTGCCGGGGTCATATCCTAGGACCCCAGAGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGCGAGTGGAAGACTACGAGCCATACCCCGATGATGGCATGGG tgttgtggttctggacctttaaggactatcttattctccattatttctagCCTTCCATATGACCAAGGACATGGTACCAGGATCTTATCCTAGGACACCAGAGGAGCATACCACCGCCACCAGGAAGTATAACATGCGAGTAGAGGAGTATGAGCCATGCCCTGATGATGGTATGGGgtgcgtatagtggctgactctgttgcttattccagagtcataggcaatgg Alignment from GeneWise CCTTCCATATGACCAAGGACATGTTGCCGGGGTCATATCCTAGGACCCCAGAGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGCGAGTGGAAGACTACGAGCCATACCCCGATGATGGCATGGG tgttgtggttctggacctttaaggactatcttattctccattatttctagCCTTCCATATGACCAAGGACATGGTACCAGGATCTTATCCTAGGACACCAGAGGAGCATACCACCGCCACCAGGAAGTATAACATGCGAGTAGAGGAGTATGAGCCATGCCCTGATGATGGTATGGGgtgcgtatagtggctgactctgttgcttattccagagtcataggcaatgg #### Ndufs8_ID192_4 --> 2 - 0 Original Alignment gaCTGGGCATGACCCTAAGTTACCTCTTTCGAGAGCCTGCCACCATCAACTACCCCTTTGAGAAGGGCCCACTGAGTCCGCGCTTCCGTGGGGAGCATGCACTGCGCCGCTACCCATCTGGAGAGGAGCGTTGCATTGCCTGCAAACTCTGTGAGGCCATCTGTCCTGCACAG tataagattttcattttccatgaggtctttttttttttaatcccccacaggtCTGGGCATGACCCTAAGTCACCTCTTCCGAGAGCCTGCCACCATTAACTACCCTTTTGAGAAGGGCACACTGAGT---CGCTTCCGTGGGGGGCATGCACTGCGCCGCTACCCAACTGGGGAGGAGCGCTGTATTGCTTGCAAA------GAGGCAATCTGCCCTGCGCAGgtatgttatagcctggccctgagtcagatcttgcttaatctcaacagtca Alignment from CESAR gaCTGGGCATGACCCTAAGTTACCTCTTTCGAGAGCCTGCCACCATCAACTACCCCTTTGAGAAGGGCCCACTGAGTCCGCGCTTCCGTGGGGAGCATGCACTGCGCCGCTACCCATCTGGAGAGGAGCGTTGCATTGCCTGCAAACTCTGTGAGGCCATCTGTCCTGCACAG tataagattttcattttccatgaggtctttttttttttaatcccccacaggtCTGGGCATGACCCTAAGTCACCTCTTCCGAGAGCCTGCCACCATTAACTACCCTTTTGAGAAGGGCACACTGAGT---CGCTTCCGTGGGGGGCATGCACTGCGCCGCTACCCAACTGGGGAGGAGCGCTGTATTGCTTGCAAA------GAGGCAATCTGCCCTGCGCAGgtatgttatagcctggccctgagtcagatcttgcttaatctcaacagtca Alignment from Spaln_aa2Genome GACTGGGCATGACCCTAAGTTACCTCTTTCGAGAGCCTGCCACCATCAACTACCCCTTTGAGAAGGGCCCACTGAGTCCGCGCTTCCGTGGGGAGCATGCACTGCGCCGCTACCCATCTGGAGAGGAGCGTTGCATTGCCTGCAAACTCTGTGAGGCCATCTGTCCTGCACAG tataagattttcattttccatgaggtctttttttttttaatcccccacagGTCTGGGCATGACCCTAAGTCACCTCTTCCGAGAGCCTGCCACCATTAACTACCCTTTTGAGAAGGGCACACTGAGT---CGCTTCCGTGGGGGGCATGCACTGCGCCGCTACCCAACTGGGGAGGAGCGCTGTATTGCTTGCAAA------GAGGCAATCTGCCCTGCGCAGgtatgttatagcctggccctgagtcagatcttgcttaatctcaacagtca Alignment from Spaln_nt2Genome GACTGGGCATGACCCTAAGTTACCTCTTTCGAGAGCCTGCCACCATCAACTACCCCTTTGAGAAGGGCCCACTGAGTCCGCGCTTCCGTGGGGAGCATGCACTGCGCCGCTACCCATCTGGAGAGGAGCGTTGCATTGCCTGCAAACTCTGTGAGGCCATCTGTCCTGCACAG tataagattttcattttccatgaggtctttttttttttaatcccccacagGTCTGGGCATGACCCTAAGTCACCTCTTCCGAGAGCCTGCCACCATTAACTACCCTTTTGAGAAGGGCACACTGAGT---CGCTTCCGTGGGGGGCATGCACTGCGCCGCTACCCAACTGGGGAGGAGCGCTGTATTGCTTGCAAA------GAGGCAATCTGCCCTGCGCAGgtatgttatagcctggccctgagtcagatcttgcttaatctcaacagtca Alignment from Pairagon GACTGGGCATGACCCTAAGTTACCTCTTTCGAGAGCCTGCCACCATCAACTACCCCTTTGAGAAGGGCCCACTGAGTCCGCGCTTCCGTGGGGAGCATGCACTGCGCCGCTACCCATCTGGAGAGGAGCGTTGCATTGCCTGCAAACTCTGTGAGGCCATCTGTCCTGCACAG tataagattttcattttccatgaggtctttttttttttaatcccccacagGTCTGGGCATGACCCTAAGTCACCTCTTCCGAGAGCCTGCCACCATTAACTACCCTTTTGAGAAGGGCACACTGAGT---CGCTTCCGTGGGGGGCATGCACTGCGCCGCTACCCAACTGGGGAGGAGCGCTGTATTGCTTGCAAA------GAGGCAATCTGCCCTGCGCAGgtatgttatagcctggccctgagtcagatcttgcttaatctcaacagtca Alignment from Exonerate_protein2genome GACTGGGCATGACCCTAAGTTACCTCTTTCGAGAGCCTGCCACCATCAACTACCCCTTTGAGAAGGGCCCACTGAGTCCGCGCTTCCGTGGGGAGCATGCACTGCGCCGCTACCCATCTGGAGAGGAGCGTTGCATTGCCTGCAAACTCTGTGAGGCCATCTGTCCTGCACAG tataagattttcattttccatgaggtctttttttttttaatcccccacagGTCTGGGCATGACCCTAAGTCACCTCTTCCGAGAGCCTGCCACCATTAACTACCCTTTTGAGAAGGGCACACTGAGT---CGCTTCCGTGGGGGGCATGCACTGCGCCGCTACCCAACTGGGGAGGAGCGCTGTATTGCTTGCAAA------GAGGCAATCTGCCCTGCGCAGgtatgttatagcctggccctgagtcagatcttgcttaatctcaacagtca Alignment from Exonerate_coding2genome GACTGGGCATGACCCTAAGTTACCTCTTTCGAGAGCCTGCCACCATCAACTACCCCTTTGAGAAGGGCCCACTGAGTCCGCGCTTCCGTGGGGAGCATGCACTGCGCCGCTACCCATCTGGAGAGGAGCGTTGCATTGCCTGCAAACTCTGTGAGGCCATCTGTCCTGCACAG tataagattttcattttccatgaggtctttttttttttaatcccccacagGTCTGGGCATGACCCTAAGTCACCTCTTCCGAGAGCCTGCCACCATTAACTACCCTTTTGAGAAGGGCACACTGAGT---CGCTTCCGTGGGGGGCATGCACTGCGCCGCTACCCAACTGGGGAGGAGCGCTGTATTGCTTGCAAA------GAGGCAATCTGCCCTGCGCAGgtatgttatagcctggccctgagtcagatcttgcttaatctcaacagtca Alignment from GeneWise GACTGGGCATGACCCTAAGTTACCTCTTTCGAGAGCCTGCCACCATCAACTACCCCTTTGAGAAGGGCCCACTGAGTCCGCGCTTCCGTGGGGAGCATGCACTGCGCCGCTACCCATCTGGAGAGGAGCGTTGCATTGCCTGCAAACTCTGTGAGGCCATCTGTCCTGCACAG tataagattttcattttccatgaggtctttttttttttaatcccccacagGTCTGGGCATGACCCTAAGTCACCTCTTCCGAGAGCCTGCCACCATTAACTACCCTTTTGAGAAGGGCACACTGAGT---CGCTTCCGTGGGGGGCATGCACTGCGCCGCTACCCAACTGGGGAGGAGCGCTGTATTGCTTGCAAA------GAGGCAATCTGCCCTGCGCAGgtatgttatagcctggccctgagtcagatcttgcttaatctcaacagtca #### Neurl1a_ID10157_2 --> 2 - 0 Original Alignment acTCCATCGGGGGCTCCTTCCCGGTGCCCTCTCACCGATGCCATCACAAGCAGAAGCATTGCCCGCCTACGCTGTCAGGTGGGGGGCTCCCGGCCACGCCGCTGCTCTTCCATCCCCACACTAAGGGCTCCCAGATCCTCATGGACCTCAGCCACAAGGCCGTCAAGAGGCAGGCCAGCTTTTGCAATGCCATCACCTTCAGTAACCGCCCGGTGCTCATCTACGAGCAAGTCAGGCTGAAG actcacttgcttgcatttgaaacacccatctatcttttctctgttgttagacTCTGTCAGGAGCTCCTTGGCAGTACCCTCCCACCAATGTCACCACAAACAGAGGCATTGCCCACCCACACTATCAGGTGCTGGGCTGCTGGCCATGCCGCTACTATTCCACCCCCATACTGAGGGGTCCCAAATCCTTACAGCCCTAAGCCACAAGGCTCTGAGGAGACAGGCCAGGTTTTGCAATGCAATCACATTTAGTAACCATCCAGTACTCACTTATGAGAGAGTCAGGTTAAAGgtaagtatccccacctgcaccttcaacaccctagagttgcaaaagttctc Alignment from CESAR acTCCATCGGGGGCTCCTTCCCGGTGCCCTCTCACCGATGCCATCACAAGCAGAAGCATTGCCCGCCTACGCTGTCAGGTGGGGGGCTCCCGGCCACGCCGCTGCTCTTCCATCCCCACACTAAGGGCTCCCAGATCCTCATGGACCTCAGCCACAAGGCCGTCAAGAGGCAGGCCAGCTTTTGCAATGCCATCACCTTCAGTAACCGCCCGGTGCTCATCTACGAGCAAGTCAGGCTGAAG actcacttgcttgcatttgaaacacccatctatcttttctctgttgttagacTCTGTCAGGAGCTCCTTGGCAGTACCCTCCCACCAATGTCACCACAAACAGAGGCATTGCCCACCCACACTATCAGGTGCTGGGCTGCTGGCCATGCCGCTACTATTCCACCCCCATACTGAGGGGTCCCAAATCCTTACAGCCCTAAGCCACAAGGCTCTGAGGAGACAGGCCAGGTTTTGCAATGCAATCACATTTAGTAACCATCCAGTACTCACTTATGAGAGAGTCAGGTTAAAGgtaagtatccccacctgcaccttcaacaccctagagttgcaaaagttctc Alignment from Spaln_aa2Genome ACTCCATCGGGGGCTCCTTCCCGGTGCCCTCTCACCGATGCCATCACAAGCAGAAGCATTGCCCGCCTACGCTGTCAGGTGGGGGGCTCCCGGCCACGCCGCTGCTCTTCCATCCCCACACTAAGGGCTCCCAGATCCTCATGGACCTCAGCCACAAGGCCGTCAAGAGGCAGGCCAGCTTTTGCAATGCCATCACCTTCAGTAACCGCCCGGTGCTCATCTACGAGCAAGTCAGGCTGAAG actcacttgcttgcatttgaaacacccatctatcttttctctgttgttagACTCTGTCAGGAGCTCCTTGGCAGTACCCTCCCACCAATGTCACCACAAACAGAGGCATTGCCCACCCACACTATCAGGTGCTGGGCTGCTGGCCATGCCGCTACTATTCCACCCCCATACTGAGGGGTCCCAAATCCTTACAGCCCTAAGCCACAAGGCTCTGAGGAGACAGGCCAGGTTTTGCAATGCAATCACATTTAGTAACCATCCAGTACTCACTTATGAGAGAGTCAGGTTAAAGgtaagtatccccacctgcaccttcaacaccctagagttgcaaaagttctc Alignment from Spaln_nt2Genome ACTCCATCGGGGGCTCCTTCCCGGTGCCCTCTCACCGATGCCATCACAAGCAGAAGCATTGCCCGCCTACGCTGTCAGGTGGGGGGCTCCCGGCCACGCCGCTGCTCTTCCATCCCCACACTAAGGGCTCCCAGATCCTCATGGACCTCAGCCACAAGGCCGTCAAGAGGCAGGCCAGCTTTTGCAATGCCATCACCTTCAGTAACCGCCCGGTGCTCATCTACGAGCAAGTCAGGCTGAAG actcacttgcttgcatttgaaacacccatctatcttttctctgttgttagACTCTGTCAGGAGCTCCTTGGCAGTACCCTCCCACCAATGTCACCACAAACAGAGGCATTGCCCACCCACACTATCAGGTGCTGGGCTGCTGGCCATGCCGCTACTATTCCACCCCCATACTGAGGGGTCCCAAATCCTTACAGCCCTAAGCCACAAGGCTCTGAGGAGACAGGCCAGGTTTTGCAATGCAATCACATTTAGTAACCATCCAGTACTCACTTATGAGAGAGTCAGGTTAAAGgtaagtatccccacctgcaccttcaacaccctagagttgcaaaagttctc Alignment from Pairagon ACTCCATCGGGGGCTCCTTCCCGGTGCCCTCTCACCGATGCCATCACAAGCAGAAGCATTGCCCGCCTACGCTGTCAGGTGGGGGGCTCCCGGCCACGCCGCTGCTCTTCCATCCCCACACTAAGGGCTCCCAGATCCTCATGGACCTCAGCCACAAGGCCGTCAAGAGGCAGGCCAGCTTTTGCAATGCCATCACCTTCAGTAACCGCCCGGTGCTCATCTACGAGCAAGTCAGGCTGAAG actcacttgcttgcatttgaaacacccatctatcttttctctgttgttagACTCTGTCAGGAGCTCCTTGGCAGTACCCTCCCACCAATGTCACCACAAACAGAGGCATTGCCCACCCACACTATCAGGTGCTGGGCTGCTGGCCATGCCGCTACTATTCCACCCCCATACTGAGGGGTCCCAAATCCTTACAGCCCTAAGCCACAAGGCTCTGAGGAGACAGGCCAGGTTTTGCAATGCAATCACATTTAGTAACCATCCAGTACTCACTTATGAGAGAGTCAGGTTAAAGgtaagtatccccacctgcaccttcaacaccctagagttgcaaaagttctc Alignment from Exonerate_protein2genome ACTCCATCGGGGGCTCCTTCCCGGTGCCCTCTCACCGATGCCATCACAAGCAGAAGCATTGCCCGCCTACGCTGTCAGGTGGGGGGCTCCCGGCCACGCCGCTGCTCTTCCATCCCCACACTAAGGGCTCCCAGATCCTCATGGACCTCAGCCACAAGGCCGTCAAGAGGCAGGCCAGCTTTTGCAATGCCATCACCTTCAGTAACCGCCCGGTGCTCATCTACGAGCAAGTCAGGCTGAAG actcacttgcttgcatttgaaacacccatctatcttttctctgttgttagACTCTGTCAGGAGCTCCTTGGCAGTACCCTCCCACCAATGTCACCACAAACAGAGGCATTGCCCACCCACACTATCAGGTGCTGGGCTGCTGGCCATGCCGCTACTATTCCACCCCCATACTGAGGGGTCCCAAATCCTTACAGCCCTAAGCCACAAGGCTCTGAGGAGACAGGCCAGGTTTTGCAATGCAATCACATTTAGTAACCATCCAGTACTCACTTATGAGAGAGTCAGGTTAAAGgtaagtatccccacctgcaccttcaacaccctagagttgcaaaagttctc Alignment from Exonerate_coding2genome ACTCCATCGGGGGCTCCTTCCCGGTGCCCTCTCACCGATGCCATCACAAGCAGAAGCATTGCCCGCCTACGCTGTCAGGTGGGGGGCTCCCGGCCACGCCGCTGCTCTTCCATCCCCACACTAAGGGCTCCCAGATCCTCATGGACCTCAGCCACAAGGCCGTCAAGAGGCAGGCCAGCTTTTGCAATGCCATCACCTTCAGTAACCGCCCGGTGCTCATCTACGAGCAAGTCAGGCTGAAG actcacttgcttgcatttgaaacacccatctatcttttctctgttgttagACTCTGTCAGGAGCTCCTTGGCAGTACCCTCCCACCAATGTCACCACAAACAGAGGCATTGCCCACCCACACTATCAGGTGCTGGGCTGCTGGCCATGCCGCTACTATTCCACCCCCATACTGAGGGGTCCCAAATCCTTACAGCCCTAAGCCACAAGGCTCTGAGGAGACAGGCCAGGTTTTGCAATGCAATCACATTTAGTAACCATCCAGTACTCACTTATGAGAGAGTCAGGTTAAAGgtaagtatccccacctgcaccttcaacaccctagagttgcaaaagttctc Alignment from GeneWise ACTCCATCGGGGGCTCCTTCCCGGTGCCCTCTCACCGATGCCATCACAAGCAGAAGCATTGCCCGCCTACGCTGTCAGGTGGGGGGCTCCCGGCCACGCCGCTGCTCTTCCATCCCCACACTAAGGGCTCCCAGATCCTCATGGACCTCAGCCACAAGGCCGTCAAGAGGCAGGCCAGCTTTTGCAATGCCATCACCTTCAGTAACCGCCCGGTGCTCATCTACGAGCAAGTCAGGCTGAAG actcacttgcttgcatttgaaacacccatctatcttttctctgttgttagACTCTGTCAGGAGCTCCTTGGCAGTACCCTCCCACCAATGTCACCACAAACAGAGGCATTGCCCACCCACACTATCAGGTGCTGGGCTGCTGGCCATGCCGCTACTATTCCACCCCCATACTGAGGGGTCCCAAATCCTTACAGCCCTAAGCCACAAGGCTCTGAGGAGACAGGCCAGGTTTTGCAATGCAATCACATTTAGTAACCATCCAGTACTCACTTATGAGAGAGTCAGGTTAAAGgtaagtatccccacctgcaccttcaacaccctagagttgcaaaagttctc #### Neurl1a_ID10162_5 --> 2 - 1 Original Alignment gcTCCACCATCATGACTGAACGGGGTGGCCCATCTCTCCCCTGCTCACCTGCCTCCACTCCAACCTCACCCAGTGCCCTGGGCATCCGCCTCTCTGACCCCCTGCTCAGCACCTGCGGTTCTGGGCCCCTAGGTGGCTCTGCTGGAg cataaacatggttttgatcctatgacgatgtcgtttgtttgtgcttgtaggtTCTACAATAATCACTAAACGAGGGGGGCCATCTCTACCCTGCTCACCTGCTTCCATACTAACCTCACCCAGTGCACTTGCCATACGCCTTTCTGGGCCCTTACTCAGCACTTGTAGTTCTGGGCCTCTAGGTGGCTCGAGAGGAggttagtacactaggcctctattttcatgaatgtgagtggaacaggcttgg Alignment from CESAR gcTCCACCATCATGACTGAACGGGGTGGCCCATCTCTCCCCTGCTCACCTGCCTCCACTCCAACCTCACCCAGTGCCCTGGGCATCCGCCTCTCTGACCCCCTGCTCAGCACCTGCGGTTCTGGGCCCCTAGGTGGCTCTGCTGGAg cataaacatggttttgatcctatgacgatgtcgtttgtttgtgcttgtaggtTCTACAATAATCACTAAACGAGGGGGGCCATCTCTACCCTGCTCACCTGCTTCCATACTAACCTCACCCAGTGCACTTGCCATACGCCTTTCTGGGCCCTTACTCAGCACTTGTAGTTCTGGGCCTCTAGGTGGCTCGAGAGGAggttagtacactaggcctctattttcatgaatgtgagtggaacaggcttgg Alignment from Spaln_aa2Genome GCTCCACCATCATGACTGAACGGGGTGGCCCATCTCTCCCCTGCTCACCTGCCTCCACTCCAACCTCACCCAGTGCCCTGGGCATCCGCCTCTCTGACCCCCTGCTCAGCACCTGCGGTTCTGGGCCCCTAGGTGGCTCTGCTGGAG cataaacatggttttgatcctatgacgatgtcgtttgtttgtgcttgtagGTTCTACAATAATCACTAAACGAGGGGGGCCATCTCTACCCTGCTCACCTGCTTCCATACTAACCTCACCCAGTGCACTTGCCATACGCCTTTCTGGGCCCTTACTCAGCACTTGTAGTTCTGGGCCTCTAGGTGGCTCGAGAGGAGgttagtacactaggcctctattttcatgaatgtgagtggaacaggcttgg Alignment from Spaln_nt2Genome GCTCCACCATCATGACTGAACGGGGTGGCCCATCTCTCCCCTGCTCACCTGCCTCCACTCCAACCTCACCCAGTGCCCTGGGCATCCGCCTCTCTGACCCCCTGCTCAGCACCTGCGGTTCTGGGCCCCTAGGTGGCTCTGCTGGAG cataaacatggttttgatcctatgacgatgtcgtttgtttgtgcttgtagGTTCTACAATAATCACTAAACGAGGGGGGCCATCTCTACCCTGCTCACCTGCTTCCATACTAACCTCACCCAGTGCACTTGCCATACGCCTTTCTGGGCCCTTACTCAGCACTTGTAGTTCTGGGCCTCTAGGTGGCTCGAGAGGAGgttagtacactaggcctctattttcatgaatgtgagtggaacaggcttgg Alignment from Pairagon GCTCCACCATCATGACTGAACGGGGTGGCCCATCTCTCCCCTGCTCACCTGCCTCCACTCCAACCTCACCCAGTGCCCTGGGCATCCGCCTCTCTGACCCCCTGCTCAGCACCTGCGGTTCTGGGCCCCTAGGTGGCTCTGCTGGAG cataaacatggttttgatcctatgacgatgtcgtttgtttgtgcttgtagGTTCTACAATAATCACTAAACGAGGGGGGCCATCTCTACCCTGCTCACCTGCTTCCATACTAACCTCACCCAGTGCACTTGCCATACGCCTTTCTGGGCCCTTACTCAGCACTTGTAGTTCTGGGCCTCTAGGTGGCTCGAGAGGAGgttagtacactaggcctctattttcatgaatgtgagtggaacaggcttgg Alignment from Exonerate_protein2genome GCTCCACCATCATGACTGAACGGGGTGGCCCATCTCTCCCCTGCTCACCTGCCTCCACTCCAACCTCACCCAGTGCCCTGGGCATCCGCCTCTCTGACCCCCTGCTCAGCACCTGCGGTTCTGGGCCCCTAGGTGGCTCTGCTGGAG cataaacatggttttgatcctatgacgatgtcgtttgtttgtgcttgtagGTTCTACAATAATCACTAAACGAGGGGGGCCATCTCTACCCTGCTCACCTGCTTCCATACTAACCTCACCCAGTGCACTTGCCATACGCCTTTCTGGGCCCTTACTCAGCACTTGTAGTTCTGGGCCTCTAGGTGGCTCGAGAGGAGgttagtacactaggcctctattttcatgaatgtgagtggaacaggcttgg Alignment from Exonerate_coding2genome GCTCCACCATCATGACTGAACGGGGTGGCCCATCTCTCCCCTGCTCACCTGCCTCCACTCCAACCTCACCCAGTGCCCTGGGCATCCGCCTCTCTGACCCCCTGCTCAGCACCTGCGGTTCTGGGCCCCTAGGTGGCTCTGCTGGAG cataaacatggttttgatcctatgacgatgtcgtttgtttgtgcttgtagGTTCTACAATAATCACTAAACGAGGGGGGCCATCTCTACCCTGCTCACCTGCTTCCATACTAACCTCACCCAGTGCACTTGCCATACGCCTTTCTGGGCCCTTACTCAGCACTTGTAGTTCTGGGCCTCTAGGTGGCTCGAGAGGAGgttagtacactaggcctctattttcatgaatgtgagtggaacaggcttgg Alignment from GeneWise GCTCCACCATCATGACTGAACGGGGTGGCCCATCTCTCCCCTGCTCACCTGCCTCCACTCCAACCTCACCCAGTGCCCTGGGCATCCGCCTCTCTGACCCCCTGCTCAGCACCTGCGGTTCTGGGCCCCTAGGTGGCTCTGCTGGAG cataaacatggttttgatcctatgacgatgtcgtttgtttgtgcttgtagGTTCTACAATAATCACTAAACGAGGGGGGCCATCTCTACCCTGCTCACCTGCTTCCATACTAACCTCACCCAGTGCACTTGCCATACGCCTTTCTGGGCCCTTACTCAGCACTTGTAGTTCTGGGCCTCTAGGTGGCTCGAGAGGAGgttagtacactaggcctctattttcatgaatgtgagtggaacaggcttgg #### Nfkb2_ID9824_2 --> 0 - 1 Original Alignment GGCCTGGATGGCATCCCCGAATATGATGATTTTGAATTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAg caccaatttatcccttaataccactaccctgcccccatctttcttaacagGGGCTAGACGGAATCCCAGATTATGAGGATTTTGAATTCAGCCCAACAATAGGAGAACCTAATGATCCAGCCCCTGAAACAggtatgggaatataaggagaaactattgtgctgtggcttttcagttgaaga Alignment from CESAR GGCCTGGATGGCATCCCCGAATATGATGATTTTGAATTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAg caccaatttatcccttaataccactaccctgcccccatctttcttaacagGGGCTAGACGGAATCCCAGATTATGAGGATTTTGAATTCAGCCCAACAATAGGAGAACCTAATGATCCAGCCCCTGAAACAggtatgggaatataaggagaaactattgtgctgtggcttttcagttgaaga Alignment from Spaln_aa2Genome GGCCTGGATGGCATCCCCGAATATGATGATTTTGAATTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAG caccaatttatcccttaataccactaccctgcccccatctttcttaacagGGGCTAGACGGAATCCCAGATTATGAGGATTTTGAATTCAGCCCAACAATAGGAGAACCTAATGATCCAGCCCCTGAAACAGgtatgggaatataaggagaaactattgtgctgtggcttttcagttgaaga Alignment from Spaln_nt2Genome GGCCTGGATGGCATCCCCGAATATGATGATTTTGAATTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAG caccaatttatcccttaataccactaccctgcccccatctttcttaacagGGGCTAGACGGAATCCCAGATTATGAGGATTTTGAATTCAGCCCAACAATAGGAGAACCTAATGATCCAGCCCCTGAAACAGgtatgggaatataaggagaaactattgtgctgtggcttttcagttgaaga Alignment from Pairagon GGCCTGGATGGCATCCCCGAATATGATGATTTTGAATTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAG caccaatttatcccttaataccactaccctgcccccatctttcttaacagGGGCTAGACGGAATCCCAGATTATGAGGATTTTGAATTCAGCCCAACAATAGGAGAACCTAATGATCCAGCCCCTGAAACAGgtatgggaatataaggagaaactattgtgctgtggcttttcagttgaaga Alignment from Exonerate_protein2genome GGCCTGGATGGCATCCCCGAATATGATGATTTTGAATTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAG caccaatttatcccttaataccactaccctgcccccatctttcttaacagGGGCTAGACGGAATCCCAGATTATGAGGATTTTGAATTCAGCCCAACAATAGGAGAACCTAATGATCCAGCCCCTGAAACAGgtatgggaatataaggagaaactattgtgctgtggcttttcagttgaaga Alignment from Exonerate_coding2genome GGCCTGGATGGCATCCCCGAATATGATGATTTTGAATTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAG caccaatttatcccttaataccactaccctgcccccatctttcttaacagGGGCTAGACGGAATCCCAGATTATGAGGATTTTGAATTCAGCCCAACAATAGGAGAACCTAATGATCCAGCCCCTGAAACAGgtatgggaatataaggagaaactattgtgctgtggcttttcagttgaaga Alignment from GeneWise GACAATTGCTACGATCCAGGCCTGGATGGCATCCCCGAATATGATGATTTTGAATTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAG taataccactaccctgcccccatctttcttaa---------------CAGGGGCTAGACGGAATCCCAGATTATGAGGATTTTGAATTCAGCCCAACAATAGGAGAACCTAATGATCCAGCCCCTGAAACAGgtatgggaatataaggagaaactattgtgctgtggcttttcagttgaaga #### Nfkb2_ID9834_12 --> 2 - 1 Original Alignment gtGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAg tattgcctttgtaaggaccttgataagggtgtcctttttccctgtcaaaggtGGAAGCCTTGGTTTTTTATCCCCCCCTTTGGCCTATAATCCCTACCAACCAGGTGCTTCCCCTATGGGTTATTATCTGGGCGGGGGGGGTGGAACACAGATGGCTGGCTCTAGACGGGACACTGATGCTGGTGAAGGTGCTGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAAGCCCTTGACACACTGCACCGAagtgggtgctggcagcaagtcacacgtgctattaaaagtgcaacgcagggt Alignment from CESAR gtGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAg tattgcctttgtaaggaccttgataagggtgtcctttttccctgtcaaaggtGGAAGCCTTGGTTTTTTATCCCCCCCTTTGGCCTATAATCCCTACCAACCAGGTGCTTCCCCTATGGGTTATTATCTGGGCGGGGGGGGTGGAACACAGATGGCTGGCTCTAGACGGGACACTGATGCTGGTGAAGGTGCTGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAAGCCCTTGACACACTGCACCGAagtgggtgctggcagcaagtcacacgtgctattaaaagtgcaacgcagggt Alignment from Spaln_aa2Genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tattgcctttgtaaggaccttgataagggtgtcctttttccctgtcaaagGTGGAAGCCTTGGTTTTTTATCCCCCCCTTTGGCCTATAATCCCTACCAACCAGGTGCTTCCCCTATGGGTTATTATCTGGGCGGGGGGGGTGGAACACAGATGGCTGGCTCTAGACGGGACACTGATGCTGGTGAAGGTGCTGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAAGCCCTTGACACACTGCACCGAAgtgggtgctggcagcaagtcacacgtgctattaaaagtgcaacgcagggt Alignment from Spaln_nt2Genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tattgcctttgtaaggaccttgataagggtgtcctttttccctgtcaaagGTGGAAGCCTTGGTTTTTTATCCCCCCCTTTGGCCTATAATCCCTACCAACCAGGTGCTTCCCCTATGGGTTATTATCTGGGCGGGGGGGGTGGAACACAGATGGCTGGCTCTAGACGGGACACTGATGCTGGTGAAGGTGCTGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAAGCCCTTGACACACTGCACCGAAgtgggtgctggcagcaagtcacacgtgctattaaaagtgcaacgcagggt Alignment from Pairagon GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tattgcctttgtaaggaccttgataagggtgtcctttttccctgtcaaagGTGGAAGCCTTGGTTTTTTATCCCCCCCTTTGGCCTATAATCCCTACCAACCAGGTGCTTCCCCTATGGGTTATTATCTGGGCGGGGGGGGTGGAACACAGATGGCTGGCTCTAGACGGGACACTGATGCTGGTGAAGGTGCTGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAAGCCCTTGACACACTGCACCGAAgtgggtgctggcagcaagtcacacgtgctattaaaagtgcaacgcagggt Alignment from Exonerate_protein2genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tattgcctttgtaaggaccttgataagggtgtcctttttccctgtcaaagGTGGAAGCCTTGGTTTTTTATCCCCCCCTTTGGCCTATAATCCCTACCAACCAGGTGCTTCCCCTATGGGTTATTATCTGGGCGGGGGGGGTGGAACACAGATGGCTGGCTCTAGACGGGACACTGATGCTGGTGAAGGTGCTGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAAGCCCTTGACACACTGCACCGAAgtgggtgctggcagcaagtcacacgtgctattaaaagtgcaacgcagggt Alignment from Exonerate_coding2genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tattgcctttgtaaggaccttgataagggtgtcctttttccctgtcaaagGTGGAAGCCTTGGTTTTTTATCCCCCCCTTTGGCCTATAATCCCTACCAACCAGGTGCTTCCCCTATGGGTTATTATCTGGGCGGGGGGGGTGGAACACAGATGGCTGGCTCTAGACGGGACACTGATGCTGGTGAAGGTGCTGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAAGCCCTTGACACACTGCACCGAAgtgggtgctggcagcaagtcacacgtgctattaaaagtgcaacgcagggt Alignment from GeneWise GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tattgcctttgtaaggaccttgataagggtgtcctttttccctgtcaaagGTGGAAGCCTTGGTTTTTTATCCCCCCCTTTGGCCTATAATCCCTACCAACCAGGTGCTTCCCCTATGGGTTATTATCTGGGCGGGGGGGGTGGAACACAGATGGCTGGCTCTAGACGGGACACTGATGCTGGTGAAGGTGCTGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAAGCCCTTGACACACTGCACCGAAgtgggtgctggcagcaagtcacacgtgctattaaaagtgcaacgcagggt #### Nfkb2_ID9841_19 --> 0 - 1 Original Alignment GTG---AAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAg tgatagtgacagatacctcccctttaggtgttcttgttttcacactacagGTAAAAAAAACCCTACTTCTAAACGCTGCTCAGAATTCCACAGAGCCACCCTTGGCCCCACCGACCCCAGTAggtaaggctgccataacttctggcacaaagcacaatattcctagagattaa Alignment from CESAR GTG---AAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAg tgatagtgacagatacctcccctttaggtgttcttgttttcacactacagGTAAAAAAAACCCTACTTCTAAACGCTGCTCAGAATTCCACAGAGCCACCCTTGGCCCCACCGACCCCAGTAggtaaggctgccataacttctggcacaaagcacaatattcctagagattaa Alignment from Spaln_aa2Genome GTGAAGACTCTGCTG---CTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG tgatagtgacagatacctcccctttaggtgttcttgttttcacactacagGTAAAAAAAACCCTACTTCTAAACGCTGCTCAGAATTCCACAGAGCCACCCTTGGCCCCACCGACCCCAGTAGgtaaggctgccataacttctggcacaaagcacaatattcctagagattaa Alignment from Spaln_nt2Genome GTGAAGA---CTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG tgatagtgacagatacctcccctttaggtgttcttgttttcacactacagGTAAAAAAAACCCTACTTCTAAACGCTGCTCAGAATTCCACAGAGCCACCCTTGGCCCCACCGACCCCAGTAGgtaaggctgccataacttctggcacaaagcacaatattcctagagattaa Alignment from Pairagon --------------------------------------------------------AAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG TGATAGTGACAGATACCTCCCCTTTAGGTGTTCTTGTTTTCACACTACAGGTAAAAAAAACCCTACTTCTAAACGCTGCTCAGAATTCCACAGAGCCACCCTTGGCCCCACCGACCCCAGTAGgtaaggctgccataacttctggcacaaagcacaatattcctagagattaa Alignment from Exonerate_protein2genome GTG---AAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG tgatagtgacagatacctcccctttaggtgttcttgttttcacactacagGTAAAAAAAACCCTACTTCTAAACGCTGCTCAGAATTCCACAGAGCCACCCTTGGCCCCACCGACCCCAGTAGgtaaggctgccataacttctggcacaaagcacaatattcctagagattaa Alignment from Exonerate_coding2genome tgatagtgacagatacctcccctttaggtgttcttgttttcacactacaggtaaaaaaaaccctacttctaaacgctgctcagaattccacagagccacccttggccccaccgaccccagtaggtaaggctgccataacttctggcacaaagcacaatattcctagagattaa Alignment from GeneWise GTG---AAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTGCAG tgatagtgacagatacctcccctttaggtgttcttgttttcacactacagGTAAAAAAAACCCTACTTCTAAACGCTGCTCAGAATTCCACAGAGCCACCCTTGGCCCCACCGACCCCAGTAGgtaaggctgccataacttctggcacaaagcacaatattcctagagattaa #### Nhlrc2_ID12134_4 --> 2 - 0 Original Alignment gaCCTAACCCTGGAAGGAAAGATGGGATGTTTTCAGAGTCGTCTTTTAATTCTCCACAGGGTGTAGCTATAGCAGATAATGTCATCTATGTGGCCGACACTGAGAACCACCTTATAAGAAAG tgtcatgtgtagtgaaaagcaaatagatgcctgactgtgtgtttctttaggaCCTAATCCTGGACGAAAGGATGGCATGTTTTCAGAGTCATCATTTAATTCCCCACAGGGTGTGGCCATAGCTGATAATGTGATCTATGTGGCCGACACAGAGAACCACCTTATAAGGAAGgtttgttattgctctgaaccattgaagccttggtggatcacttgaaatat Alignment from CESAR gaCCTAACCCTGGAAGGAAAGATGGGATGTTTTCAGAGTCGTCTTTTAATTCTCCACAGGGTGTAGCTATAGCAGATAATGTCATCTATGTGGCCGACACTGAGAACCACCTTATAAGAAAG tgtcatgtgtagtgaaaagcaaatagatgcctgactgtgtgtttctttaggaCCTAATCCTGGACGAAAGGATGGCATGTTTTCAGAGTCATCATTTAATTCCCCACAGGGTGTGGCCATAGCTGATAATGTGATCTATGTGGCCGACACAGAGAACCACCTTATAAGGAAGgtttgttattgctctgaaccattgaagccttggtggatcacttgaaatat Alignment from Spaln_aa2Genome GACCTAACCCTGGAAGGAAAGATGGGATGTTTTCAGAGTCGTCTTTTAATTCTCCACAGGGTGTAGCTATAGCAGATAATGTCATCTATGTGGCCGACACTGAGAACCACCTTATAAGAAAG tgtcatgtgtagtgaaaagcaaatagatgcctgactgtgtgtttctttagGACCTAATCCTGGACGAAAGGATGGCATGTTTTCAGAGTCATCATTTAATTCCCCACAGGGTGTGGCCATAGCTGATAATGTGATCTATGTGGCCGACACAGAGAACCACCTTATAAGGAAGgtttgttattgctctgaaccattgaagccttggtggatcacttgaaatat Alignment from Spaln_nt2Genome GACCTAACCCTGGAAGGAAAGATGGGATGTTTTCAGAGTCGTCTTTTAATTCTCCACAGGGTGTAGCTATAGCAGATAATGTCATCTATGTGGCCGACACTGAGAACCACCTTATAAGAAAG tgtcatgtgtagtgaaaagcaaatagatgcctgactgtgtgtttctttagGACCTAATCCTGGACGAAAGGATGGCATGTTTTCAGAGTCATCATTTAATTCCCCACAGGGTGTGGCCATAGCTGATAATGTGATCTATGTGGCCGACACAGAGAACCACCTTATAAGGAAGgtttgttattgctctgaaccattgaagccttggtggatcacttgaaatat Alignment from Pairagon GACCTAACCCTGGAAGGAAAGATGGGATGTTTTCAGAGTCGTCTTTTAATTCTCCACAGGGTGTAGCTATAGCAGATAATGTCATCTATGTGGCCGACACTGAGAACCACCTTATAAGAAAG tgtcatgtgtagtgaaaagcaaatagatgcctgactgtgtgtttctttagGACCTAATCCTGGACGAAAGGATGGCATGTTTTCAGAGTCATCATTTAATTCCCCACAGGGTGTGGCCATAGCTGATAATGTGATCTATGTGGCCGACACAGAGAACCACCTTATAAGGAAGgtttgttattgctctgaaccattgaagccttggtggatcacttgaaatat Alignment from Exonerate_protein2genome GACCTAACCCTGGAAGGAAAGATGGGATGTTTTCAGAGTCGTCTTTTAATTCTCCACAGGGTGTAGCTATAGCAGATAATGTCATCTATGTGGCCGACACTGAGAACCACCTTATAAGAAAG tgtcatgtgtagtgaaaagcaaatagatgcctgactgtgtgtttctttagGACCTAATCCTGGACGAAAGGATGGCATGTTTTCAGAGTCATCATTTAATTCCCCACAGGGTGTGGCCATAGCTGATAATGTGATCTATGTGGCCGACACAGAGAACCACCTTATAAGGAAGgtttgttattgctctgaaccattgaagccttggtggatcacttgaaatat Alignment from Exonerate_coding2genome GACCTAACCCTGGAAGGAAAGATGGGATGTTTTCAGAGTCGTCTTTTAATTCTCCACAGGGTGTAGCTATAGCAGATAATGTCATCTATGTGGCCGACACTGAGAACCACCTTATAAGAAAG tgtcatgtgtagtgaaaagcaaatagatgcctgactgtgtgtttctttagGACCTAATCCTGGACGAAAGGATGGCATGTTTTCAGAGTCATCATTTAATTCCCCACAGGGTGTGGCCATAGCTGATAATGTGATCTATGTGGCCGACACAGAGAACCACCTTATAAGGAAGgtttgttattgctctgaaccattgaagccttggtggatcacttgaaatat Alignment from GeneWise GCATTGGAGGACCTAACCCTGGAAGGAAAGATGGGATGTTTTCAGAGTCGTCTTTTAATTCTCCACAGGGTGTAGCTATAGCAGATAATGTCATCTATGTGGCCGACACTGAGAACCACCTTATAAGAAAG tgtcatgtgtagtgaaaagcaaatagatgcctgactgtgtgtttctttagGA---------CCTAATCCTGGACGAAAGGATGGCATGTTTTCAGAGTCATCATTTAATTCCCCACAGGGTGTGGCCATAGCTGATAATGTGATCTATGTGGCCGACACAGAGAACCACCTTATAAGGAAGgtttgttattgctctgaaccattgaagccttggtggatcacttgaaatat #### Nhlrc2_ID12135_5 --> 0 - 1 Original Alignment ATAGACCTGGAAGCTGAGAAGGTGACCACTGTGGCTGGTGTCGGTATTCAAGGGACAGATACAGAAGGGGGCGAGGAGGGAGACAAGCAGCCCATCAGCTCCCCGTGGGACGTTGCGCTTGGGACCTCAg tcctctaaaagttgatatggctgccatgcaggataatctttttattgtagATAGACCTGGAAGCCGAAAAAGTGACTACTGTGGCAAGTGCCGGTATCCAAGGTACAGATACAGCAGGTGGTGAGGAGGGTGACAAGCAGCCAATCAGCTCCCAGTGGGACATTGCACTTGGGACCTCAggtaagttggctcagtagaacatactggtgatgaaaaattggctttgcaaa Alignment from CESAR ATAGACCTGGAAGCTGAGAAGGTGACCACTGTGGCTGGTGTCGGTATTCAAGGGACAGATACAGAAGGGGGCGAGGAGGGAGACAAGCAGCCCATCAGCTCCCCGTGGGACGTTGCGCTTGGGACCTCAg tcctctaaaagttgatatggctgccatgcaggataatctttttattgtagATAGACCTGGAAGCCGAAAAAGTGACTACTGTGGCAAGTGCCGGTATCCAAGGTACAGATACAGCAGGTGGTGAGGAGGGTGACAAGCAGCCAATCAGCTCCCAGTGGGACATTGCACTTGGGACCTCAggtaagttggctcagtagaacatactggtgatgaaaaattggctttgcaaa Alignment from Spaln_aa2Genome ATAGACCTGGAAGCTGAGAAGGTGACCACTGTGGCTGGTGTCGGTATTCAAGGGACAGATACAGAAGGGGGCGAGGAGGGAGACAAGCAGCCCATCAGCTCCCCGTGGGACGTTGCGCTTGGGACCTCAG tcctctaaaagttgatatggctgccatgcaggataatctttttattgtagATAGACCTGGAAGCCGAAAAAGTGACTACTGTGGCAAGTGCCGGTATCCAAGGTACAGATACAGCAGGTGGTGAGGAGGGTGACAAGCAGCCAATCAGCTCCCAGTGGGACATTGCACTTGGGACCTCAGgtaagttggctcagtagaacatactggtgatgaaaaattggctttgcaaa Alignment from Spaln_nt2Genome ATAGACCTGGAAGCTGAGAAGGTGACCACTGTGGCTGGTGTCGGTATTCAAGGGACAGATACAGAAGGGGGCGAGGAGGGAGACAAGCAGCCCATCAGCTCCCCGTGGGACGTTGCGCTTGGGACCTCAG tcctctaaaagttgatatggctgccatgcaggataatctttttattgtagATAGACCTGGAAGCCGAAAAAGTGACTACTGTGGCAAGTGCCGGTATCCAAGGTACAGATACAGCAGGTGGTGAGGAGGGTGACAAGCAGCCAATCAGCTCCCAGTGGGACATTGCACTTGGGACCTCAGgtaagttggctcagtagaacatactggtgatgaaaaattggctttgcaaa Alignment from Pairagon ATAGACCTGGAAGCTGAGAAGGTGACCACTGTGGCTGGTGTCGGTATTCAAGGGACAGATACAGAAGGGGGCGAGGAGGGAGACAAGCAGCCCATCAGCTCCCCGTGGGACGTTGCGCTTGGGACCTCAG tcctctaaaagttgatatggctgccatgcaggataatctttttattgtagATAGACCTGGAAGCCGAAAAAGTGACTACTGTGGCAAGTGCCGGTATCCAAGGTACAGATACAGCAGGTGGTGAGGAGGGTGACAAGCAGCCAATCAGCTCCCAGTGGGACATTGCACTTGGGACCTCAGgtaagttggctcagtagaacatactggtgatgaaaaattggctttgcaaa Alignment from Exonerate_protein2genome ATAGACCTGGAAGCTGAGAAGGTGACCACTGTGGCTGGTGTCGGTATTCAAGGGACAGATACAGAAGGGGGCGAGGAGGGAGACAAGCAGCCCATCAGCTCCCCGTGGGACGTTGCGCTTGGGACCTCAG tcctctaaaagttgatatggctgccatgcaggataatctttttattgtagATAGACCTGGAAGCCGAAAAAGTGACTACTGTGGCAAGTGCCGGTATCCAAGGTACAGATACAGCAGGTGGTGAGGAGGGTGACAAGCAGCCAATCAGCTCCCAGTGGGACATTGCACTTGGGACCTCAGgtaagttggctcagtagaacatactggtgatgaaaaattggctttgcaaa Alignment from Exonerate_coding2genome ATAGACCTGGAAGCTGAGAAGGTGACCACTGTGGCTGGTGTCGGTATTCAAGGGACAGATACAGAAGGGGGCGAGGAGGGAGACAAGCAGCCCATCAGCTCCCCGTGGGACGTTGCGCTTGGGACCTCAG tcctctaaaagttgatatggctgccatgcaggataatctttttattgtagATAGACCTGGAAGCCGAAAAAGTGACTACTGTGGCAAGTGCCGGTATCCAAGGTACAGATACAGCAGGTGGTGAGGAGGGTGACAAGCAGCCAATCAGCTCCCAGTGGGACATTGCACTTGGGACCTCAGgtaagttggctcagtagaacatactggtgatgaaaaattggctttgcaaa Alignment from GeneWise ACCTGGAAGCTGAGAAGGTGACCACTGTGGCTGGTGTCGGTATTCAAGGGACAGATACAGAAGGGGGCGAGGAGGGAGACAAGCAGCCCATCAGCTCCCCGTGGGACGTTGCGCTTGGGACCTCAG tcctctaaaagttgatatggctgccatgcaggataatctttttattgtagatagACCTGGAAGCCGAAAAAGTGACTACTGTGGCAAGTGCCGGTATCCAAGGTACAGATACAGCAGGTGGTGAGGAGGGTGACAAGCAGCCAATCAGCTCCCAGTGGGACATTGCACTTGGGACCTCAGgtaagttggctcagtagaacatactggtgatgaaaaattggctttgcaaa #### Nmrk1_ID4437_3 --> 0 - 1 Original Alignment CCAGAGTCTGAGATAGACATAGATGAAAATGGTTTTTTGCAGTATGATg agaaacattacactcttaggatcttggtcggtgcacacggtgtctggcagCCAGAAGCTGAAATT---ATAGATGAAAATGGTTTTTTGCAGTATGATggtatgtttataacaaacaatagtagactggggaggtggccacactgggga Alignment from CESAR CCAGAGTCTGAGATAGACATAGATGAAAATGGTTTTTTGCAGTATGATg agaaacattacactcttaggatcttggtcggtgcacacggtgtctggcagCCAGAAGCTGAAATT---ATAGATGAAAATGGTTTTTTGCAGTATGATggtatgtttataacaaacaatagtagactggggaggtggccacactgggga Alignment from Spaln_aa2Genome CCAGAGTCTGAGATAGACATAGATGAAAATGGTTTTTTGCAGTATGATG agaaacattacactcttaggatcttggtcggtgcacacggtgtctggcagCCAGAAGCTGAAATT---ATAGATGAAAATGGTTTTTTGCAGTATGATGgtatgtttataacaaacaatagtagactggggaggtggccacactgggga Alignment from Spaln_nt2Genome CCAGAGTCTGAGATAGACATAGATGAAAATGGTTTTTTGCAGTATGATG agaaacattacactcttaggatcttggtcggtgcacacggtgtctggcagCCAGAAGCTGAAAT---TATAGATGAAAATGGTTTTTTGCAGTATGATGgtatgtttataacaaacaatagtagactggggaggtggccacactgggga Alignment from Pairagon CCAGAGTCTGAGATAGACATAGATGAAAATGGTTTTTTGCAGTATGATG agaaacattacactcttaggatcttggtcggtgcacacggtgtctggcagCCAGAAGCTGAAAT---TATAGATGAAAATGGTTTTTTGCAGTATGATGgtatgtttataacaaacaatagtagactggggaggtggccacactgggga Alignment from Exonerate_protein2genome CCAGAGTCTGAGATAGACATAGATGAAAATGGTTTTTTGCAGTATGATG agaaacattacactcttaggatcttggtcggtgcacacggtgtctggcagCCAGAAGCTGAAATT---ATAGATGAAAATGGTTTTTTGCAGTATGATGgtatgtttataacaaacaatagtagactggggaggtggccacactgggga Alignment from Exonerate_coding2genome CCAGAGTCTGAGATAGACATAGATGAAAATGGTTTTTTGCAGTATGATG agaaacattacactcttaggatcttggtcggtgcacacggtgtctggcagCCAGAAGCTGAAATT---ATAGATGAAAATGGTTTTTTGCAGTATGATGgtatgtttataacaaacaatagtagactggggaggtggccacactgggga Alignment from GeneWise CCAGAGTCTGAGATAGACATAGATGAAAATGGTTTTTTGCAGTATGATG agaaacattacactcttaggatcttggtcggtgcacacggtgtctggcagCCAGAAGCTGAAATT---ATAGATGAAAATGGTTTTTTGCAGTATGATGgtatgtttataacaaacaatagtagactggggaggtggccacactgggga #### Noc3l_ID7657_18 --> 0 - 0 Original Alignment ACTTTTCCCAGAACAGATCTCTTGCTTGATAACGAGTCTCAGGGCAGCGGGGTGTTTCTACCTGAGCTGGAGGAGCCAGAGTACTGTAATGCACAGAACACCGCACTGTGGGAGCTGCACACGCTTCGG ccaaatacaaatctctaaccttacatttaaggtggcacttctgtttctagACTTTCCCTGTAACAGATCTCCTACTTGATAATGAATCTCAGGGCAGTGGGGTATTTCTTCCAGAGCTAGAGGAGCCAGAGTATTGCAACGCGCAGAACACTGCCCTGTGGGAACTTCACACACTTTGTgtaggtactgctctgttcaatcattgacttagccctgccctgtcccaaaa Alignment from CESAR ACTTTTCCCAGAACAGATCTCTTGCTTGATAACGAGTCTCAGGGCAGCGGGGTGTTTCTACCTGAGCTGGAGGAGCCAGAGTACTGTAATGCACAGAACACCGCACTGTGGGAGCTGCACACGCTTCGG ccaaatacaaatctctaaccttacatttaaggtggcacttctgtttctagACTTTCCCTGTAACAGATCTCCTACTTGATAATGAATCTCAGGGCAGTGGGGTATTTCTTCCAGAGCTAGAGGAGCCAGAGTATTGCAACGCGCAGAACACTGCCCTGTGGGAACTTCACACACTTTGTgtaggtactgctctgttcaatcattgacttagccctgccctgtcccaaaa Alignment from Spaln_aa2Genome ACTTTTCCCAGAACAGATCTCTTGCTTGATAACGAGTCTCAGGGCAGCGGGGTGTTTCTACCTGAGCTGGAGGAGCCAGAGTACTGTAATGCACAGAACACCGCACTGTGGGAGCTGCACACGCTTCGG ccaaatacaaatctctaaccttacatttaaggtggcacttctgtttctagACTTTCCCTGTAACAGATCTCCTACTTGATAATGAATCTCAGGGCAGTGGGGTATTTCTTCCAGAGCTAGAGGAGCCAGAGTATTGCAACGCGCAGAACACTGCCCTGTGGGAACTTCACACACTTTGTgtaggtactgctctgttcaatcattgacttagccctgccctgtcccaaaa Alignment from Spaln_nt2Genome ACTTTTCCCAGAACAGATCTCTTGCTTGATAACGAGTCTCAGGGCAGCGGGGTGTTTCTACCTGAGCTGGAGGAGCCAGAGTACTGTAATGCACAGAACACCGCACTGTGGGAGCTGCACACGCTTCGG ccaaatacaaatctctaaccttacatttaaggtggcacttctgtttctagACTTTCCCTGTAACAGATCTCCTACTTGATAATGAATCTCAGGGCAGTGGGGTATTTCTTCCAGAGCTAGAGGAGCCAGAGTATTGCAACGCGCAGAACACTGCCCTGTGGGAACTTCACACACTTTGTgtaggtactgctctgttcaatcattgacttagccctgccctgtcccaaaa Alignment from Pairagon ACTTTTCCCAGAACAGATCTCTTGCTTGATAACGAGTCTCAGGGCAGCGGGGTGTTTCTACCTGAGCTGGAGGAGCCAGAGTACTGTAATGCACAGAACACCGCACTGTGGGAGCTGCACACGCTTCGG ccaaatacaaatctctaaccttacatttaaggtggcacttctgtttctagACTTTCCCTGTAACAGATCTCCTACTTGATAATGAATCTCAGGGCAGTGGGGTATTTCTTCCAGAGCTAGAGGAGCCAGAGTATTGCAACGCGCAGAACACTGCCCTGTGGGAACTTCACACACTTTGTgtaggtactgctctgttcaatcattgacttagccctgccctgtcccaaaa Alignment from Exonerate_protein2genome ACTTTTCCCAGAACAGATCTCTTGCTTGATAACGAGTCTCAGGGCAGCGGGGTGTTTCTACCTGAGCTGGAGGAGCCAGAGTACTGTAATGCACAGAACACCGCACTGTGGGAGCTGCACACGCTTCGG ccaaatacaaatctctaaccttacatttaaggtggcacttctgtttctagACTTTCCCTGTAACAGATCTCCTACTTGATAATGAATCTCAGGGCAGTGGGGTATTTCTTCCAGAGCTAGAGGAGCCAGAGTATTGCAACGCGCAGAACACTGCCCTGTGGGAACTTCACACACTTTGTgtaggtactgctctgttcaatcattgacttagccctgccctgtcccaaaa Alignment from Exonerate_coding2genome ACTTTTCCCAGAACAGATCTCTTGCTTGATAACGAGTCTCAGGGCAGCGGGGTGTTTCTACCTGAGCTGGAGGAGCCAGAGTACTGTAATGCACAGAACACCGCACTGTGGGAGCTGCACACGCTTCGG ccaaatacaaatctctaaccttacatttaaggtggcacttctgtttctagACTTTCCCTGTAACAGATCTCCTACTTGATAATGAATCTCAGGGCAGTGGGGTATTTCTTCCAGAGCTAGAGGAGCCAGAGTATTGCAACGCGCAGAACACTGCCCTGTGGGAACTTCACACACTTTGTgtaggtactgctctgttcaatcattgacttagccctgccctgtcccaaaa Alignment from GeneWise ACTTTTCCCAGAACAGATCTCTTGCTTGATAACGAGTCTCAGGGCAGCGGGGTGTTTCTACCTGAGCTGGAGGAGCCAGAGTACTGTAATGCACAGAACACCGCACTGTGGGAGCTGCACACGCTTCGG ccaaatacaaatctctaaccttacatttaaggtggcacttctgtttctagACTTTCCCTGTAACAGATCTCCTACTTGATAATGAATCTCAGGGCAGTGGGGTATTTCTTCCAGAGCTAGAGGAGCCAGAGTATTGCAACGCGCAGAACACTGCCCTGTGGGAACTTCACACACTTTGTgtaggtactgctctgttcaatcattgacttagccctgccctgtcccaaaa #### Noc3l_ID7664_11 --> 0 - 0 Original Alignment ATGTTAAAAACATTTTTATGCCTGCGGATCAAGGAGGTAGAAGTGAAAAAAGATACAGAGGACATTAACAAGCCCAAAAGGTTCATGACTTTCAAGGAG---------AAGAGAAAAACTCTATCAAGAATGCAAAGAAAG gatctgagttgtctgaaaaacctacatgcctcctccaacccctgactcagATGTTAATAACTTTTCTATGCTTGCGGATCAAAGAGGTGGAAGTCAAAAAGGATACTGAGGACATTAACAAGCCTAAGAGGTTCATGACTTTTAAGGAGAAAAGGAAGAAGAGAAAGACACTGTCACAGATGCAAAGGAAAgtaagcactgttatagcttaagtgattacagggttcatccacctgttcag Alignment from CESAR ATGTTAAAAACATTTTTATGCCTGCGGATCAAGGAGGTAGAAGTGAAAAAAGATACAGAGGACATTAACAAGCCCAAAAGGTTCATGACTTTCAAGGAG---------AAGAGAAAAACTCTATCAAGAATGCAAAGAAAG gatctgagttgtctgaaaaacctacatgcctcctccaacccctgactcagATGTTAATAACTTTTCTATGCTTGCGGATCAAAGAGGTGGAAGTCAAAAAGGATACTGAGGACATTAACAAGCCTAAGAGGTTCATGACTTTTAAGGAGAAAAGGAAGAAGAGAAAGACACTGTCACAGATGCAAAGGAAAgtaagcactgttatagcttaagtgattacagggttcatccacctgttcag Alignment from Spaln_aa2Genome ATGTTAAAAACATTTTTATGCCTGCGGATCAAGGAGGTAGAAGTGAAAAAAGATACAGAGGACATTAACAAGCCCAAAAGGTTCATGACTTTCAAGGAG---------AAGAGAAAAACTCTATCAAGAATGCAAAGAAAG gatctgagttgtctgaaaaacctacatgcctcctccaacccctgactcagATGTTAATAACTTTTCTATGCTTGCGGATCAAAGAGGTGGAAGTCAAAAAGGATACTGAGGACATTAACAAGCCTAAGAGGTTCATGACTTTTAAGGAGAAAAGGAAGAAGAGAAAGACACTGTCACAGATGCAAAGGAAAgtaagcactgttatagcttaagtgattacagggttcatccacctgttcag Alignment from Spaln_nt2Genome ATGTTAAAAACATTTTTATGCCTGCGGATCAAGGAGGTAGAAGTGAAAAAAGATACAGAGGACATTAACAAGCCCAAAAGGTTCATGACTTTCAAGGAGAA---------GAGAAAAACTCTATCAAGAATGCAAAGAAAG gatctgagttgtctgaaaaacctacatgcctcctccaacccctgactcagATGTTAATAACTTTTCTATGCTTGCGGATCAAAGAGGTGGAAGTCAAAAAGGATACTGAGGACATTAACAAGCCTAAGAGGTTCATGACTTTTAAGGAGAAAAGGAAGAAGAGAAAGACACTGTCACAGATGCAAAGGAAAgtaagcactgttatagcttaagtgattacagggttcatccacctgttcag Alignment from Pairagon ATGTTAAAAACATTTTTATGCCTGCGGATCAAGGAGGTAGAAGTGAAAAAAGATACAGAGGACATTAACAAGCCCAAAAGGTTCATGACTTTCAAGG---------AGAAGAGAAAAACTCTATCAAGAATGCAAAGAAAG gatctgagttgtctgaaaaacctacatgcctcctccaacccctgactcagATGTTAATAACTTTTCTATGCTTGCGGATCAAAGAGGTGGAAGTCAAAAAGGATACTGAGGACATTAACAAGCCTAAGAGGTTCATGACTTTTAAGGAGAAAAGGAAGAAGAGAAAGACACTGTCACAGATGCAAAGGAAAgtaagcactgttatagcttaagtgattacagggttcatccacctgttcag Alignment from Exonerate_protein2genome ATGTTAAAAACATTTTTATGCCTGCGGATCAAGGAGGTAGAAGTGAAAAAAGATACAGAGGACATTAACAAGCCCAAAAGGTTCATGACTTTCAAGGAG---------AAGAGAAAAACTCTATCAAGAATGCAAAGAAAG gatctgagttgtctgaaaaacctacatgcctcctccaacccctgactcagATGTTAATAACTTTTCTATGCTTGCGGATCAAAGAGGTGGAAGTCAAAAAGGATACTGAGGACATTAACAAGCCTAAGAGGTTCATGACTTTTAAGGAGAAAAGGAAGAAGAGAAAGACACTGTCACAGATGCAAAGGAAAgtaagcactgttatagcttaagtgattacagggttcatccacctgttcag Alignment from Exonerate_coding2genome ATGTTAAAAACATTTTTATGCCTGCGGATCAAGGAGGTAGAAGTGAAAAAAGATACAGAGGACATTAACAAGCCCAAAAGGTTCATGACTTTCAAGGAG---------AAGAGAAAAACTCTATCAAGAATGCAAAGAAAG gatctgagttgtctgaaaaacctacatgcctcctccaacccctgactcagATGTTAATAACTTTTCTATGCTTGCGGATCAAAGAGGTGGAAGTCAAAAAGGATACTGAGGACATTAACAAGCCTAAGAGGTTCATGACTTTTAAGGAGAAAAGGAAGAAGAGAAAGACACTGTCACAGATGCAAAGGAAAgtaagcactgttatagcttaagtgattacagggttcatccacctgttcag Alignment from GeneWise ATGTTAAAAACATTTTTATGCCTGCGGATCAAGGAGGTAGAAGTGAAAAAAGATACAGAGGACATTAACAAGCCCAAAAGGTTCATGACTTTCAAGGAGAAGAGAAAA---------ACTCTATCAAGAATGCAAAGAAAG gatctgagttgtctgaaaaacctacatgcctcctccaacccctgactcagATGTTAATAACTTTTCTATGCTTGCGGATCAAAGAGGTGGAAGTCAAAAAGGATACTGAGGACATTAACAAGCCTAAGAGGTTCATGACTTTTAAGGAGAAAAGGAAGAAGAGAAAGACACTGTCACAGATGCAAAGGAAAgtaagcactgttatagcttaagtgattacagggttcatccacctgttcag #### Noc3l_ID7665_10 --> 0 - 0 Original Alignment GTATCTGAAATGTGTTGCGAAGCAGTAAAGAAACTCTTTAAACAAGATAAATTAGGCCAAGCTTCTCTGGGTGTCATTAAAGTCATCTCTGGTTTTGTAAAGGGCAGAAATTACGAAGTTAGGCCAGAG tgaactactctatgttcaggttggtagactaactatcccactcaactcagGTATCTGAAATGTGTTGTGAAGCAGTGAAAAAACTCTTTAAACAAGATAAAGTGGGCCAAGCATCTCTAGGTGTTATTAAAGTCATCTCAGGTTTTGTAGAGGGCAGGAATTATGAAGTCAGGCCCGAAgtgagttccagaacttggattatacagagatgatatttgtaagtaccctt Alignment from CESAR GTATCTGAAATGTGTTGCGAAGCAGTAAAGAAACTCTTTAAACAAGATAAATTAGGCCAAGCTTCTCTGGGTGTCATTAAAGTCATCTCTGGTTTTGTAAAGGGCAGAAATTACGAAGTTAGGCCAGAG tgaactactctatgttcaggttggtagactaactatcccactcaactcagGTATCTGAAATGTGTTGTGAAGCAGTGAAAAAACTCTTTAAACAAGATAAAGTGGGCCAAGCATCTCTAGGTGTTATTAAAGTCATCTCAGGTTTTGTAGAGGGCAGGAATTATGAAGTCAGGCCCGAAgtgagttccagaacttggattatacagagatgatatttgtaagtaccctt Alignment from Spaln_aa2Genome GTATCTGAAATGTGTTGCGAAGCAGTAAAGAAACTCTTTAAACAAGATAAATTAGGCCAAGCTTCTCTGGGTGTCATTAAAGTCATCTCTGGTTTTGTAAAGGGCAGAAATTACGAAGTTAGGCCAGAG tgaactactctatgttcaggttggtagactaactatcccactcaactcagGTATCTGAAATGTGTTGTGAAGCAGTGAAAAAACTCTTTAAACAAGATAAAGTGGGCCAAGCATCTCTAGGTGTTATTAAAGTCATCTCAGGTTTTGTAGAGGGCAGGAATTATGAAGTCAGGCCCGAAgtgagttccagaacttggattatacagagatgatatttgtaagtaccctt Alignment from Spaln_nt2Genome GTATCTGAAATGTGTTGCGAAGCAGTAAAGAAACTCTTTAAACAAGATAAATTAGGCCAAGCTTCTCTGGGTGTCATTAAAGTCATCTCTGGTTTTGTAAAGGGCAGAAATTACGAAGTTAGGCCAGAG tgaactactctatgttcaggttggtagactaactatcccactcaactcagGTATCTGAAATGTGTTGTGAAGCAGTGAAAAAACTCTTTAAACAAGATAAAGTGGGCCAAGCATCTCTAGGTGTTATTAAAGTCATCTCAGGTTTTGTAGAGGGCAGGAATTATGAAGTCAGGCCCGAAgtgagttccagaacttggattatacagagatgatatttgtaagtaccctt Alignment from Pairagon GTATCTGAAATGTGTTGCGAAGCAGTAAAGAAACTCTTTAAACAAGATAAATTAGGCCAAGCTTCTCTGGGTGTCATTAAAGTCATCTCTGGTTTTGTAAAGGGCAGAAATTACGAAGTTAGGCCAGAG tgaactactctatgttcaggttggtagactaactatcccactcaactcagGTATCTGAAATGTGTTGTGAAGCAGTGAAAAAACTCTTTAAACAAGATAAAGTGGGCCAAGCATCTCTAGGTGTTATTAAAGTCATCTCAGGTTTTGTAGAGGGCAGGAATTATGAAGTCAGGCCCGAAgtgagttccagaacttggattatacagagatgatatttgtaagtaccctt Alignment from Exonerate_protein2genome GTATCTGAAATGTGTTGCGAAGCAGTAAAGAAACTCTTTAAACAAGATAAATTAGGCCAAGCTTCTCTGGGTGTCATTAAAGTCATCTCTGGTTTTGTAAAGGGCAGAAATTACGAAGTTAGGCCAGAG tgaactactctatgttcaggttggtagactaactatcccactcaactcagGTATCTGAAATGTGTTGTGAAGCAGTGAAAAAACTCTTTAAACAAGATAAAGTGGGCCAAGCATCTCTAGGTGTTATTAAAGTCATCTCAGGTTTTGTAGAGGGCAGGAATTATGAAGTCAGGCCCGAAgtgagttccagaacttggattatacagagatgatatttgtaagtaccctt Alignment from Exonerate_coding2genome GTATCTGAAATGTGTTGCGAAGCAGTAAAGAAACTCTTTAAACAAGATAAATTAGGCCAAGCTTCTCTGGGTGTCATTAAAGTCATCTCTGGTTTTGTAAAGGGCAGAAATTACGAAGTTAGGCCAGAG tgaactactctatgttcaggttggtagactaactatcccactcaactcagGTATCTGAAATGTGTTGTGAAGCAGTGAAAAAACTCTTTAAACAAGATAAAGTGGGCCAAGCATCTCTAGGTGTTATTAAAGTCATCTCAGGTTTTGTAGAGGGCAGGAATTATGAAGTCAGGCCCGAAgtgagttccagaacttggattatacagagatgatatttgtaagtaccctt Alignment from GeneWise GTATCTGAAATGTGTTGCGAAGCAGTAAAGAAACTCTTTAAACAAGATAAATTAGGCCAAGCTTCTCTGGGTGTCATTAAAGTCATCTCTGGTTTTGTAAAGGGCAGAAATTACGAAGTTAGGCCAGAG tgaactactctatgttcaggttggtagactaactatcccactcaactcagGTATCTGAAATGTGTTGTGAAGCAGTGAAAAAACTCTTTAAACAAGATAAAGTGGGCCAAGCATCTCTAGGTGTTATTAAAGTCATCTCAGGTTTTGTAGAGGGCAGGAATTATGAAGTCAGGCCCGAAgtgagttccagaacttggattatacagagatgatatttgtaagtaccctt #### Noc3l_ID7666_9 --> 2 - 0 Original Alignment acTGGAAGCAAAGGAAGCTGAAGAAGAGCAATGTGGTGTCCTTAAAGGCCTACAAAGGGCTGGCTGAAGTGGCAGTGAAGAGCCTGTGTGAGCTGTTGGTGGCCCTGCCCCATTTTAACTTTCACAACAACATCATTGTACTGATTGTCCCTCTGATGAACGATGGGTCAAAACCG agcctggatgtaactccagtagtctgagtctcactctctctctctctcagacTGGAAGCAGAGAAAGTTGGAGAAGAGTAATGTGGTTCCCTTAAAGTCCTATAGGGGACTAGCCCAAGTTGCAGTAAAGAGCCTATGTGAGCTGTTAGTAGCACTGCCACACCTTATCTTTCACAACAACATTGTTGTG---CTT------GTAATGAATGATGCATCAAGACTCgtatgttgccttgcatattccaagagactggtttcaggtgtgccctcagg Alignment from CESAR acTGGAAGCAAAGGAAGCTGAAGAAGAGCAATGTGGTGTCCTTAAAGGCCTACAAAGGGCTGGCTGAAGTGGCAGTGAAGAGCCTGTGTGAGCTGTTGGTGGCCCTGCCCCATTTTAACTTTCACAACAACATCATTGTACTGATTGTCCCTCTGATGAACGATGGGTCAAAACCG agcctggatgtaactccagtagtctgagtctcactctctctctctctcagacTGGAAGCAGAGAAAGTTGGAGAAGAGTAATGTGGTTCCCTTAAAGTCCTATAGGGGACTAGCCCAAGTTGCAGTAAAGAGCCTATGTGAGCTGTTAGTAGCACTGCCACACCTTATCTTTCACAACAACATTGTTGTGCTTGTA---------ATGAATGATGCATCAAGACTCgtatgttgccttgcatattccaagagactggtttcaggtgtgccctcagg Alignment from Spaln_aa2Genome ACTGGAAGCAAAGGAAGCTGAAGAAGAGCAATGTGGTGTCCTTAAAGGCCTACAAAGGGCTGGCTGAAGTGGCAGTGAAGAGCCTGTGTGAGCTGTTGGTGGCCCTGCCCCATTTTAACTTTCACAACAACATCATTGTACTGATTGTCCCTCTGATGAACGATGGGTCAAAACCG agcctggatgtaactccagtagtctgagtctcactctctctctctctcagACTGGAAGCAGAGAAAGTTGGAGAAGAGTAATGTGGTTCCCTTAAAGTCCTATAGGGGACTAGCCCAAGTTGCAGTAAAGAGCCTATGTGAGCTGTTAGTAGCACTGCCACACCTTATCTTTCACAACAACATTGTTGTGCTTGTA---------ATGAATGATGCATCAAGACTCgtatgttgccttgcatattccaagagactggtttcaggtgtgccctcagg Alignment from Spaln_nt2Genome ACTGGAAGCAAAGGAAGCTGAAGAAGAGCAATGTGGTGTCCTTAAAGGCCTACAAAGGGCTGGCTGAAGTGGCAGTGAAGAGCCTGTGTGAGCTGTTGGTGGCCCTGCCCCATTTTAACTTTCACAACAACATCATTGTACTGATTGTCCCTCTGATGAACGATGGGTCAAAACCG agcctggatgtaactccagtagtctgagtctcactctctctctctctcagACTGGAAGCAGAGAAAGTTGGAGAAGAGTAATGTGGTTCCCTTAAAGTCCTATAGGGGACTAGCCCAAGTTGCAGTAAAGAGCCTATGTGAGCTGTTAGTAGCACTGCCACACCTTATCTTTCACAACAACATTGTTGTGCT---------TGTAATGAATGATGCATCAAGACTCgtatgttgccttgcatattccaagagactggtttcaggtgtgccctcagg Alignment from Pairagon ACTGGAAGCAAAGGAAGCTGAAGAAGAGCAATGTGGTGTCCTTAAAGGCCTACAAAGGGCTGGCTGAAGTGGCAGTGAAGAGCCTGTGTGAGCTGTTGGTGGCCCTGCCCCATTTTAACTTTCACAACAACATCATTGTACTGATTGTCCCTCTGATGAACGATGGGTCAAAACCG agcctggatgtaactccagtagtctgagtctcactctctctctctctcagACTGGAAGCAGAGAAAGTTGGAGAAGAGTAATGTGGTTCCCTTAAAGTCCTATAGGGGACTAGCCCAAGTTGCAGTAAAGAGCCTATGTGAGCTGTTAGTAGCACTGCCACACCTTATCTTTCACAACAACATTGTTGTGCT---------TGTAATGAATGATGCATCAAGACTCgtatgttgccttgcatattccaagagactggtttcaggtgtgccctcagg Alignment from Exonerate_protein2genome ACTGGAAGCAAAGGAAGCTGAAGAAGAGCAATGTGGTGTCCTTAAAGGCCTACAAAGGGCTGGCTGAAGTGGCAGTGAAGAGCCTGTGTGAGCTGTTGGTGGCCCTGCCCCATTTTAACTTTCACAACAACATCATTGTACTGATTGTCCCTCTGATGAACGATGGGTCAAAACCG agcctggatgtaactccagtagtctgagtctcactctctctctctctcagACTGGAAGCAGAGAAAGTTGGAGAAGAGTAATGTGGTTCCCTTAAAGTCCTATAGGGGACTAGCCCAAGTTGCAGTAAAGAGCCTATGTGAGCTGTTAGTAGCACTGCCACACCTTATCTTTCACAACAACATTGTTGTGCTTGTA---------ATGAATGATGCATCAAGACTCgtatgttgccttgcatattccaagagactggtttcaggtgtgccctcagg Alignment from Exonerate_coding2genome ACTGGAAGCAAAGGAAGCTGAAGAAGAGCAATGTGGTGTCCTTAAAGGCCTACAAAGGGCTGGCTGAAGTGGCAGTGAAGAGCCTGTGTGAGCTGTTGGTGGCCCTGCCCCATTTTAACTTTCACAACAACATCATTGTACTGATTGTCCCTCTGATGAACGATGGGTCAAAACCG agcctggatgtaactccagtagtctgagtctcactctctctctctctcagACTGGAAGCAGAGAAAGTTGGAGAAGAGTAATGTGGTTCCCTTAAAGTCCTATAGGGGACTAGCCCAAGTTGCAGTAAAGAGCCTATGTGAGCTGTTAGTAGCACTGCCACACCTTATCTTTCACAACAACATTGTTGTGCTTGTA---------ATGAATGATGCATCAAGACTCgtatgttgccttgcatattccaagagactggtttcaggtgtgccctcagg Alignment from GeneWise ACTGGAAGCAAAGGAAGCTGAAGAAGAGCAATGTGGTGTCCTTAAAGGCCTACAAAGGGCTGGCTGAAGTGGCAGTGAAGAGCCTGTGTGAGCTGTTGGTGGCCCTGCCCCATTTTAACTTTCACAACAACATCATTGTACTGATTGTCCCTCTGATGAACGATGGGTCAAAACCG agcctggatgtaactccagtagtctgagtctcactctctctctctctcagACTGGAAGCAGAGAAAGTTGGAGAAGAGTAATGTGGTTCCCTTAAAGTCCTATAGGGGACTAGCCCAAGTTGCAGTAAAGAGCCTATGTGAGCTGTTAGTAGCACTGCCACACCTTATCTTTCACAACAACATTGTTGTGCTTGTA---------ATGAATGATGCATCAAGACTCgtatgttgccttgcatattccaagagactggtttcaggtgtgccctcagg #### Noc3l_ID7668_7 --> 0 - 0 Original Alignment ATTAAAAAACTGAAAGAGTTGCGTTCCATGCTGATGGAGCAGGACCCTGATGTGGCTGTCACTGTCCGGAAGTTGGTTATCATCTCACTGATGGAGCTGTTTAAGGACATCACTCCCTCGTATAAAATCCGGCCTCTAACCGAAGCAGAAAAATCTACCAAG ctagagtatctcttggctgttctggcaatgctatccttatgttttggaagGTGAAGAAACTGAAAGAGCTGCGGTCCATGCTGATGGAGCAGGATCCTGATGTGGCTGTAACTGTGTGTAAGCTAGTTATCATTTCTCTGATGGAGCTCTTCAAGGATATCTCTCCCTCATATAAGATCCAACCTCTAACTGAAGCAGAAAAGTCCATCAAAgtacgtcctggatctgccacaaatagtgaacaaacgcccattgattcaac Alignment from CESAR ATTAAAAAACTGAAAGAGTTGCGTTCCATGCTGATGGAGCAGGACCCTGATGTGGCTGTCACTGTCCGGAAGTTGGTTATCATCTCACTGATGGAGCTGTTTAAGGACATCACTCCCTCGTATAAAATCCGGCCTCTAACCGAAGCAGAAAAATCTACCAAG ctagagtatctcttggctgttctggcaatgctatccttatgttttggaagGTGAAGAAACTGAAAGAGCTGCGGTCCATGCTGATGGAGCAGGATCCTGATGTGGCTGTAACTGTGTGTAAGCTAGTTATCATTTCTCTGATGGAGCTCTTCAAGGATATCTCTCCCTCATATAAGATCCAACCTCTAACTGAAGCAGAAAAGTCCATCAAAgtacgtcctggatctgccacaaatagtgaacaaacgcccattgattcaac Alignment from Spaln_aa2Genome ATTAAAAAACTGAAAGAGTTGCGTTCCATGCTGATGGAGCAGGACCCTGATGTGGCTGTCACTGTCCGGAAGTTGGTTATCATCTCACTGATGGAGCTGTTTAAGGACATCACTCCCTCGTATAAAATCCGGCCTCTAACCGAAGCAGAAAAATCTACCAAG ctagagtatctcttggctgttctggcaatgctatccttatgttttggaagGTGAAGAAACTGAAAGAGCTGCGGTCCATGCTGATGGAGCAGGATCCTGATGTGGCTGTAACTGTGTGTAAGCTAGTTATCATTTCTCTGATGGAGCTCTTCAAGGATATCTCTCCCTCATATAAGATCCAACCTCTAACTGAAGCAGAAAAGTCCATCAAAgtacgtcctggatctgccacaaatagtgaacaaacgcccattgattcaac Alignment from Spaln_nt2Genome ATTAAAAAACTGAAAGAGTTGCGTTCCATGCTGATGGAGCAGGACCCTGATGTGGCTGTCACTGTCCGGAAGTTGGTTATCATCTCACTGATGGAGCTGTTTAAGGACATCACTCCCTCGTATAAAATCCGGCCTCTAACCGAAGCAGAAAAATCTACCAAG ctagagtatctcttggctgttctggcaatgctatccttatgttttggaagGTGAAGAAACTGAAAGAGCTGCGGTCCATGCTGATGGAGCAGGATCCTGATGTGGCTGTAACTGTGTGTAAGCTAGTTATCATTTCTCTGATGGAGCTCTTCAAGGATATCTCTCCCTCATATAAGATCCAACCTCTAACTGAAGCAGAAAAGTCCATCAAAgtacgtcctggatctgccacaaatagtgaacaaacgcccattgattcaac Alignment from Pairagon ATTAAAAAACTGAAAGAGTTGCGTTCCATGCTGATGGAGCAGGACCCTGATGTGGCTGTCACTGTCCGGAAGTTGGTTATCATCTCACTGATGGAGCTGTTTAAGGACATCACTCCCTCGTATAAAATCCGGCCTCTAACCGAAGCAGAAAAATCTACCAAG ctagagtatctcttggctgttctggcaatgctatccttatgttttggaagGTGAAGAAACTGAAAGAGCTGCGGTCCATGCTGATGGAGCAGGATCCTGATGTGGCTGTAACTGTGTGTAAGCTAGTTATCATTTCTCTGATGGAGCTCTTCAAGGATATCTCTCCCTCATATAAGATCCAACCTCTAACTGAAGCAGAAAAGTCCATCAAAgtacgtcctggatctgccacaaatagtgaacaaacgcccattgattcaac Alignment from Exonerate_protein2genome ATTAAAAAACTGAAAGAGTTGCGTTCCATGCTGATGGAGCAGGACCCTGATGTGGCTGTCACTGTCCGGAAGTTGGTTATCATCTCACTGATGGAGCTGTTTAAGGACATCACTCCCTCGTATAAAATCCGGCCTCTAACCGAAGCAGAAAAATCTACCAAG ctagagtatctcttggctgttctggcaatgctatccttatgttttggaagGTGAAGAAACTGAAAGAGCTGCGGTCCATGCTGATGGAGCAGGATCCTGATGTGGCTGTAACTGTGTGTAAGCTAGTTATCATTTCTCTGATGGAGCTCTTCAAGGATATCTCTCCCTCATATAAGATCCAACCTCTAACTGAAGCAGAAAAGTCCATCAAAgtacgtcctggatctgccacaaatagtgaacaaacgcccattgattcaac Alignment from Exonerate_coding2genome ATTAAAAAACTGAAAGAGTTGCGTTCCATGCTGATGGAGCAGGACCCTGATGTGGCTGTCACTGTCCGGAAGTTGGTTATCATCTCACTGATGGAGCTGTTTAAGGACATCACTCCCTCGTATAAAATCCGGCCTCTAACCGAAGCAGAAAAATCTACCAAG ctagagtatctcttggctgttctggcaatgctatccttatgttttggaagGTGAAGAAACTGAAAGAGCTGCGGTCCATGCTGATGGAGCAGGATCCTGATGTGGCTGTAACTGTGTGTAAGCTAGTTATCATTTCTCTGATGGAGCTCTTCAAGGATATCTCTCCCTCATATAAGATCCAACCTCTAACTGAAGCAGAAAAGTCCATCAAAgtacgtcctggatctgccacaaatagtgaacaaacgcccattgattcaac Alignment from GeneWise ATTAAAAAACTGAAAGAGTTGCGTTCCATGCTGATGGAGCAGGACCCTGATGTGGCTGTCACTGTCCGGAAGTTGGTTATCATCTCACTGATGGAGCTGTTTAAGGACATCACTCCCTCGTATAAAATCCGGCCTCTAACCGAAGCAGAAAAATCTACCAAG ctagagtatctcttggctgttctggcaatgctatccttatgttttggaagGTGAAGAAACTGAAAGAGCTGCGGTCCATGCTGATGGAGCAGGATCCTGATGTGGCTGTAACTGTGTGTAAGCTAGTTATCATTTCTCTGATGGAGCTCTTCAAGGATATCTCTCCCTCATATAAGATCCAACCTCTAACTGAAGCAGAAAAGTCCATCAAAgtacgtcctggatctgccacaaatagtgaacaaacgcccattgattcaac #### Npas4_ID776_5 --> 1 - 1 Original Alignment tGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGt gggggcaagaggctatatgcagtgtgaataattccgactcttatttgcagtGTCCTAATCTATCTTGGCTTTGAGCGCAGCAAACTGCTCTGTAAATCGTGGTATGGACTACTACACCCTGAGGACCTGGCCCAAGCATCTTCTCAACACTACCGCCTGcgtgagatttaatttctagtaggtcattgcagtattctcatgaattttata Alignment from CESAR tGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGt gggggcaagaggctatatgcagtgtgaataattccgactcttatttgcagtGTCCTAATCTATCTTGGCTTTGAGCGCAGCAAACTGCTCTGTAAATCGTGGTATGGACTACTACACCCTGAGGACCTGGCCCAAGCATCTTCTCAACACTACCGCCTGcgtgagatttaatttctagtaggtcattgcagtattctcatgaattttata Alignment from Spaln_aa2Genome TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT gggggcaagaggctatatgcagtgtgaataattccgactcttatttgcagTGTCCTAATCTATCTTGGCTTTGAGCGCAGCAAACTGCTCTGTAAATCGTGGTATGGACTACTACACCCTGAGGACCTGGCCCAAGCATCTTCTCAACACTACCGCCTGCgtgagatttaatttctagtaggtcattgcagtattctcatgaattttata Alignment from Spaln_nt2Genome TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT gggggcaagaggctatatgcagtgtgaataattccgactcttatttgcagTGTCCTAATCTATCTTGGCTTTGAGCGCAGCAAACTGCTCTGTAAATCGTGGTATGGACTACTACACCCTGAGGACCTGGCCCAAGCATCTTCTCAACACTACCGCCTGCgtgagatttaatttctagtaggtcattgcagtattctcatgaattttata Alignment from Pairagon TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT gggggcaagaggctatatgcagtgtgaataattccgactcttatttgcagTGTCCTAATCTATCTTGGCTTTGAGCGCAGCAAACTGCTCTGTAAATCGTGGTATGGACTACTACACCCTGAGGACCTGGCCCAAGCATCTTCTCAACACTACCGCCTGCgtgagatttaatttctagtaggtcattgcagtattctcatgaattttata Alignment from Exonerate_protein2genome TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT gggggcaagaggctatatgcagtgtgaataattccgactcttatttgcagTGTCCTAATCTATCTTGGCTTTGAGCGCAGCAAACTGCTCTGTAAATCGTGGTATGGACTACTACACCCTGAGGACCTGGCCCAAGCATCTTCTCAACACTACCGCCTGCgtgagatttaatttctagtaggtcattgcagtattctcatgaattttata Alignment from Exonerate_coding2genome TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT gggggcaagaggctatatgcagtgtgaataattccgactcttatttgcagTGTCCTAATCTATCTTGGCTTTGAGCGCAGCAAACTGCTCTGTAAATCGTGGTATGGACTACTACACCCTGAGGACCTGGCCCAAGCATCTTCTCAACACTACCGCCTGCgtgagatttaatttctagtaggtcattgcagtattctcatgaattttata Alignment from GeneWise TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT gggggcaagaggctatatgcagtgtgaataattccgactcttatttgcagTGTCCTAATCTATCTTGGCTTTGAGCGCAGCAAACTGCTCTGTAAATCGTGGTATGGACTACTACACCCTGAGGACCTGGCCCAAGCATCTTCTCAACACTACCGCCTGCgtgagatttaatttctagtaggtcattgcagtattctcatgaattttata #### Npas4_ID778_3 --> 0 - 1 Original Alignment GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTg tccaggtcctatcatcgagtgccctcattaaactactgatctttgtgcagGTGGACTTAGTGGCACAGGGTGTCAGTATCTACGATATTCTTGACCCTACTGACCATCTAACTGTGTGTCAGCAACTCACAATGCCCTCTGCTCTTGATGCAggtgcctctatcatatacataatttccaatgtgtttaatgcacttagaaga Alignment from CESAR GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTg tccaggtcctatcatcgagtgccctcattaaactactgatctttgtgcagGTGGACTTAGTGGCACAGGGTGTCAGTATCTACGATATTCTTGACCCTACTGACCATCTAACTGTGTGTCAGCAACTCACAATGCCCTCTGCTCTTGATGCAggtgcctctatcatatacataatttccaatgtgtttaatgcacttagaaga Alignment from Spaln_aa2Genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG tccaggtcctatcatcgagtgccctcattaaactactgatctttgtgcagGTGGACTTAGTGGCACAGGGTGTCAGTATCTACGATATTCTTGACCCTACTGACCATCTAACTGTGTGTCAGCAACTCACAATGCCCTCTGCTCTTGATGCAGgtgcctctatcatatacataatttccaatgtgtttaatgcacttagaaga Alignment from Spaln_nt2Genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG tccaggtcctatcatcgagtgccctcattaaactactgatctttgtgcagGTGGACTTAGTGGCACAGGGTGTCAGTATCTACGATATTCTTGACCCTACTGACCATCTAACTGTGTGTCAGCAACTCACAATGCCCTCTGCTCTTGATGCAGgtgcctctatcatatacataatttccaatgtgtttaatgcacttagaaga Alignment from Pairagon GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG tccaggtcctatcatcgagtgccctcattaaactactgatctttgtgcagGTGGACTTAGTGGCACAGGGTGTCAGTATCTACGATATTCTTGACCCTACTGACCATCTAACTGTGTGTCAGCAACTCACAATGCCCTCTGCTCTTGATGCAGgtgcctctatcatatacataatttccaatgtgtttaatgcacttagaaga Alignment from Exonerate_protein2genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG tccaggtcctatcatcgagtgccctcattaaactactgatctttgtgcagGTGGACTTAGTGGCACAGGGTGTCAGTATCTACGATATTCTTGACCCTACTGACCATCTAACTGTGTGTCAGCAACTCACAATGCCCTCTGCTCTTGATGCAGgtgcctctatcatatacataatttccaatgtgtttaatgcacttagaaga Alignment from Exonerate_coding2genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG tccaggtcctatcatcgagtgccctcattaaactactgatctttgtgcagGTGGACTTAGTGGCACAGGGTGTCAGTATCTACGATATTCTTGACCCTACTGACCATCTAACTGTGTGTCAGCAACTCACAATGCCCTCTGCTCTTGATGCAGgtgcctctatcatatacataatttccaatgtgtttaatgcacttagaaga Alignment from GeneWise GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG tccaggtcctatcatcgagtgccctcattaaactactgatctttgtgcagGTGGACTTAGTGGCACAGGGTGTCAGTATCTACGATATTCTTGACCCTACTGACCATCTAACTGTGTGTCAGCAACTCACAATGCCCTCTGCTCTTGATGCAGgtgcctctatcatatacataatttccaatgtgtttaatgcacttagaaga #### Nrxn2_ID1733_2 --> 2 - 1 Original Alignment agGAACACCCCATGGAAg aaggggtcaacatttatcctgctgtcctataaacttcctctacctgccagaaGAACACCCCATGGAGggtaagggtgccctccttccatcaatgtctttctaagatctccatgtgatc Alignment from CESAR agGAACACCCCATGGAAg aaggggtcaacatttatcctgctgtcctataaacttcctctacctgccagaaGAACACCCCATGGAGggtaagggtgccctccttccatcaatgtctttctaagatctccatgtgatc Alignment from Spaln_aa2Genome AGGAACACCCCATGGAAG aaggggtcaacatttatcctgctgtcctataaacttcctctacctgccagAAGAACACCCCATGGAGGgtaagggtgccctccttccatcaatgtctttctaagatctccatgtgatc Alignment from Spaln_nt2Genome AGGAACACCCCATGGAAG aaggggtcaacatttatcctgctgtcctataaacttcctctacctgccagAAGAACACCCCATGGAGGgtaagggtgccctccttccatcaatgtctttctaagatctccatgtgatc Alignment from Pairagon AGGAACACCCCATGGAAG aaggggtcaacatttatcctgctgtcctataaacttcctctacctgccagAAGAACACCCCATGGAGGgtaagggtgccctccttccatcaatgtctttctaagatctccatgtgatc Alignment from Exonerate_protein2genome AGGAACACCCCATGGAAG aaggggtcaacatttatcctgctgtcctataaacttcctctacctgccagAAGAACACCCCATGGAGGgtaagggtgccctccttccatcaatgtctttctaagatctccatgtgatc Alignment from Exonerate_coding2genome AGGAACACCCCATGGAAG aaggggtcaacatttatcctgctgtcctataaacttcctctacctgccagAAGAACACCCCATGGAGGgtaagggtgccctccttccatcaatgtctttctaagatctccatgtgatc Alignment from GeneWise aaggggtcaacatttatcctgctgtcctataaacttcctctacctgccagaagaacaccccatggagggtaagggtgccctccttccatcaatgtctttctaagatctccatgtgatc #### Nrxn2_ID1743_5 --> 2 - 0 Original Alignment gcAAGGAGGAATTTGTGGCAACCTTCAAGGGCAATGAGTTCTTCTGCTACGACCTGTCCCACAACCCGATCCAGAGCAGCACTGACGAGATCACACTGGCCTTCCGCACCCTGCAGCGCAACGGGCTGATGCTGCACACGGGGAAGTCGGCTGACTACGTCAACCTGTCCCTCAAGTCTGGGGCTGTCTGGCTGGTCATCAACCTAGGCTCAGGTGCCTTCGAGGCCCTCGTGGAACCCGTCAATGGCAAGTTCAACGACAACGCCTGGCACGACGTCCGGGTTACCCGAAACCTGCGCCAG acctccaaaccccttggagcattttagcttgttgaactttcctttgccaggtGAAGAGGAGTTTGTAGCAACGTTCAAGGACAATGAGTTTTTTTGCTATGACCTTTCACACAACCCAATTCAGAGCAGCTCTGATGAGATCACGTTGGCCTTCCGTACAGTCCAGCGCAATGGGCTCATGCTCCATACAGGGAGGTCAGCTGACTATGTTAACTTGTCCCTCAAGACAGGGGCTGTCTGGTTGGTCATAAACCTGGGCTCAGGTGCATTTGAATCCCTTGTAGAACCCATTAATGGGAAGTTCAATGACAACACTTGGCATGACATCTGTGTAACCCGAAATCTGCGCCAGgtaagtaggctagaaaatcatcaggaatgagatgctagatgttctgttgg Alignment from CESAR gcAAGGAGGAATTTGTGGCAACCTTCAAGGGCAATGAGTTCTTCTGCTACGACCTGTCCCACAACCCGATCCAGAGCAGCACTGACGAGATCACACTGGCCTTCCGCACCCTGCAGCGCAACGGGCTGATGCTGCACACGGGGAAGTCGGCTGACTACGTCAACCTGTCCCTCAAGTCTGGGGCTGTCTGGCTGGTCATCAACCTAGGCTCAGGTGCCTTCGAGGCCCTCGTGGAACCCGTCAATGGCAAGTTCAACGACAACGCCTGGCACGACGTCCGGGTTACCCGAAACCTGCGCCAG acctccaaaccccttggagcattttagcttgttgaactttcctttgccaggtGAAGAGGAGTTTGTAGCAACGTTCAAGGACAATGAGTTTTTTTGCTATGACCTTTCACACAACCCAATTCAGAGCAGCTCTGATGAGATCACGTTGGCCTTCCGTACAGTCCAGCGCAATGGGCTCATGCTCCATACAGGGAGGTCAGCTGACTATGTTAACTTGTCCCTCAAGACAGGGGCTGTCTGGTTGGTCATAAACCTGGGCTCAGGTGCATTTGAATCCCTTGTAGAACCCATTAATGGGAAGTTCAATGACAACACTTGGCATGACATCTGTGTAACCCGAAATCTGCGCCAGgtaagtaggctagaaaatcatcaggaatgagatgctagatgttctgttgg Alignment from Spaln_aa2Genome GCAAGGAGGAATTTGTGGCAACCTTCAAGGGCAATGAGTTCTTCTGCTACGACCTGTCCCACAACCCGATCCAGAGCAGCACTGACGAGATCACACTGGCCTTCCGCACCCTGCAGCGCAACGGGCTGATGCTGCACACGGGGAAGTCGGCTGACTACGTCAACCTGTCCCTCAAGTCTGGGGCTGTCTGGCTGGTCATCAACCTAGGCTCAGGTGCCTTCGAGGCCCTCGTGGAACCCGTCAATGGCAAGTTCAACGACAACGCCTGGCACGACGTCCGGGTTACCCGAAACCTGCGCCAG acctccaaaccccttggagcattttagcttgttgaactttcctttgccagGTGAAGAGGAGTTTGTAGCAACGTTCAAGGACAATGAGTTTTTTTGCTATGACCTTTCACACAACCCAATTCAGAGCAGCTCTGATGAGATCACGTTGGCCTTCCGTACAGTCCAGCGCAATGGGCTCATGCTCCATACAGGGAGGTCAGCTGACTATGTTAACTTGTCCCTCAAGACAGGGGCTGTCTGGTTGGTCATAAACCTGGGCTCAGGTGCATTTGAATCCCTTGTAGAACCCATTAATGGGAAGTTCAATGACAACACTTGGCATGACATCTGTGTAACCCGAAATCTGCGCCAGgtaagtaggctagaaaatcatcaggaatgagatgctagatgttctgttgg Alignment from Spaln_nt2Genome GCAAGGAGGAATTTGTGGCAACCTTCAAGGGCAATGAGTTCTTCTGCTACGACCTGTCCCACAACCCGATCCAGAGCAGCACTGACGAGATCACACTGGCCTTCCGCACCCTGCAGCGCAACGGGCTGATGCTGCACACGGGGAAGTCGGCTGACTACGTCAACCTGTCCCTCAAGTCTGGGGCTGTCTGGCTGGTCATCAACCTAGGCTCAGGTGCCTTCGAGGCCCTCGTGGAACCCGTCAATGGCAAGTTCAACGACAACGCCTGGCACGACGTCCGGGTTACCCGAAACCTGCGCCAG acctccaaaccccttggagcattttagcttgttgaactttcctttgccagGTGAAGAGGAGTTTGTAGCAACGTTCAAGGACAATGAGTTTTTTTGCTATGACCTTTCACACAACCCAATTCAGAGCAGCTCTGATGAGATCACGTTGGCCTTCCGTACAGTCCAGCGCAATGGGCTCATGCTCCATACAGGGAGGTCAGCTGACTATGTTAACTTGTCCCTCAAGACAGGGGCTGTCTGGTTGGTCATAAACCTGGGCTCAGGTGCATTTGAATCCCTTGTAGAACCCATTAATGGGAAGTTCAATGACAACACTTGGCATGACATCTGTGTAACCCGAAATCTGCGCCAGgtaagtaggctagaaaatcatcaggaatgagatgctagatgttctgttgg Alignment from Pairagon GCAAGGAGGAATTTGTGGCAACCTTCAAGGGCAATGAGTTCTTCTGCTACGACCTGTCCCACAACCCGATCCAGAGCAGCACTGACGAGATCACACTGGCCTTCCGCACCCTGCAGCGCAACGGGCTGATGCTGCACACGGGGAAGTCGGCTGACTACGTCAACCTGTCCCTCAAGTCTGGGGCTGTCTGGCTGGTCATCAACCTAGGCTCAGGTGCCTTCGAGGCCCTCGTGGAACCCGTCAATGGCAAGTTCAACGACAACGCCTGGCACGACGTCCGGGTTACCCGAAACCTGCGCCAG acctccaaaccccttggagcattttagcttgttgaactttcctttgccagGTGAAGAGGAGTTTGTAGCAACGTTCAAGGACAATGAGTTTTTTTGCTATGACCTTTCACACAACCCAATTCAGAGCAGCTCTGATGAGATCACGTTGGCCTTCCGTACAGTCCAGCGCAATGGGCTCATGCTCCATACAGGGAGGTCAGCTGACTATGTTAACTTGTCCCTCAAGACAGGGGCTGTCTGGTTGGTCATAAACCTGGGCTCAGGTGCATTTGAATCCCTTGTAGAACCCATTAATGGGAAGTTCAATGACAACACTTGGCATGACATCTGTGTAACCCGAAATCTGCGCCAGgtaagtaggctagaaaatcatcaggaatgagatgctagatgttctgttgg Alignment from Exonerate_protein2genome GCAAGGAGGAATTTGTGGCAACCTTCAAGGGCAATGAGTTCTTCTGCTACGACCTGTCCCACAACCCGATCCAGAGCAGCACTGACGAGATCACACTGGCCTTCCGCACCCTGCAGCGCAACGGGCTGATGCTGCACACGGGGAAGTCGGCTGACTACGTCAACCTGTCCCTCAAGTCTGGGGCTGTCTGGCTGGTCATCAACCTAGGCTCAGGTGCCTTCGAGGCCCTCGTGGAACCCGTCAATGGCAAGTTCAACGACAACGCCTGGCACGACGTCCGGGTTACCCGAAACCTGCGCCAG acctccaaaccccttggagcattttagcttgttgaactttcctttgccagGTGAAGAGGAGTTTGTAGCAACGTTCAAGGACAATGAGTTTTTTTGCTATGACCTTTCACACAACCCAATTCAGAGCAGCTCTGATGAGATCACGTTGGCCTTCCGTACAGTCCAGCGCAATGGGCTCATGCTCCATACAGGGAGGTCAGCTGACTATGTTAACTTGTCCCTCAAGACAGGGGCTGTCTGGTTGGTCATAAACCTGGGCTCAGGTGCATTTGAATCCCTTGTAGAACCCATTAATGGGAAGTTCAATGACAACACTTGGCATGACATCTGTGTAACCCGAAATCTGCGCCAGgtaagtaggctagaaaatcatcaggaatgagatgctagatgttctgttgg Alignment from Exonerate_coding2genome GCAAGGAGGAATTTGTGGCAACCTTCAAGGGCAATGAGTTCTTCTGCTACGACCTGTCCCACAACCCGATCCAGAGCAGCACTGACGAGATCACACTGGCCTTCCGCACCCTGCAGCGCAACGGGCTGATGCTGCACACGGGGAAGTCGGCTGACTACGTCAACCTGTCCCTCAAGTCTGGGGCTGTCTGGCTGGTCATCAACCTAGGCTCAGGTGCCTTCGAGGCCCTCGTGGAACCCGTCAATGGCAAGTTCAACGACAACGCCTGGCACGACGTCCGGGTTACCCGAAACCTGCGCCAGCACGCAGGGATTGGACACGCTATG acctccaaaccccttggagcattttagcttgttgaactttcctttgccagGTGAAGAGGAGTTTGTAGCAACGTTCAAGGACAATGAGTTTTTTTGCTATGACCTTTCACACAACCCAATTCAGAGCAGCTCTGATGAGATCACGTTGGCCTTCCGTACAGTCCAGCGCAATGGGCTCATGCTCCATACAGGGAGGTCAGCTGACTATGTTAACTTGTCCCTCAAGACAGGGGCTGTCTGGTTGGTCATAAACCTGGGCTCAGGTGCATTTGAATCCCTTGTAGAACCCATTAATGGGAAGTTCAATGACAACACTTGGCATGACATCTGTGTAACCCGAAATCTGCGCCAGGTAAGTAGGCTAGAAAATCATCAGgaatgagatgctagatgttctgttgg Alignment from GeneWise AGGAATTTGTGGCAACCTTCAAGGGCAATGAGTTCTTCTGCTACGACCTGTCCCACAACCCGATCCAGAGCAGCACTGACGAGATCACACTGGCCTTCCGCACCCTGCAGCGCAACGGGCTGATGCTGCACACGGGGAAGTCGGCTGACTACGTCAACCTGTCCCTCAAGTCTGGGGCTGTCTGGCTGGTCATCAACCTAGGCTCAGGTGCCTTCGAGGCCCTCGTGGAACCCGTCAATGGCAAGTTCAACGACAACGCCTGGCACGACGTCCGGGTTACCCGAAACCTGCGCCAG acctccaaaccccttggagcattttagcttgttgaactttcctttgccaggtgaagAGGAGTTTGTAGCAACGTTCAAGGACAATGAGTTTTTTTGCTATGACCTTTCACACAACCCAATTCAGAGCAGCTCTGATGAGATCACGTTGGCCTTCCGTACAGTCCAGCGCAATGGGCTCATGCTCCATACAGGGAGGTCAGCTGACTATGTTAACTTGTCCCTCAAGACAGGGGCTGTCTGGTTGGTCATAAACCTGGGCTCAGGTGCATTTGAATCCCTTGTAGAACCCATTAATGGGAAGTTCAATGACAACACTTGGCATGACATCTGTGTAACCCGAAATCTGCGCCAGgtaagtaggctagaaaatcatcaggaatgagatgctagatgttctgttgg #### Nrxn2_ID1754_10 --> 2 - 1 Original Alignment agGCCACGGTCTTAAGCTATGACGGCTCCATGTACATGAAGATCATGCTGCCCACTGCGATGCACACGGAAGCAGAGGATGTGTCCTTACGCTTCATGTCTCAGAGGGCATATGGACTCATGATGGCCACCACCTCCAGGGAGTCGGCTGACACTCTGCGTCTCGAGCTGGACGGGGGGCAGATGAGGCTCACCGTCAACCTCg gcaatgtgccctgcgtcctccgtgattctgggatctctgtcttcttacagagGCTACGGTCTTAAGTTACGAAGGAACAATGTACATGAAGATAATGCTTCCTACTGCAATGGACATAGAAGCAGGTGATGTGTCCATACATTTCATGTCA---AGGGCATATGGCATCATGATGGCCACCACATCTAGGGAGTCAGCTGATACTCTGCACCTTAAACTGGATGGAGGGCAGATGCGGCTCACTGTTAACCTTggtgagaatcttgagtaggccagggtggtcaaatgccaggatgagtcaggt Alignment from CESAR agGCCACGGTCTTAAGCTATGACGGCTCCATGTACATGAAGATCATGCTGCCCACTGCGATGCACACGGAAGCAGAGGATGTGTCCTTACGCTTCATGTCTCAGAGGGCATATGGACTCATGATGGCCACCACCTCCAGGGAGTCGGCTGACACTCTGCGTCTCGAGCTGGACGGGGGGCAGATGAGGCTCACCGTCAACCTCg gcaatgtgccctgcgtcctccgtgattctgggatctctgtcttcttacagagGCTACGGTCTTAAGTTACGAAGGAACAATGTACATGAAGATAATGCTTCCTACTGCAATGGACATAGAAGCAGGTGATGTGTCCATACATTTCATGTCA---AGGGCATATGGCATCATGATGGCCACCACATCTAGGGAGTCAGCTGATACTCTGCACCTTAAACTGGATGGAGGGCAGATGCGGCTCACTGTTAACCTTggtgagaatcttgagtaggccagggtggtcaaatgccaggatgagtcaggt Alignment from Spaln_aa2Genome AGGCCACGGTCTTAAGCTATGACGGCTCCATGTACATGAAGATCATGCTGCCCACTGCGATGCACACGGAAGCAGAGGATGTGTCCTTACGCTTCATGTCTCAGAGGGCATATGGACTCATGATGGCCACCACCTCCAGGGAGTCGGCTGACACTCTGCGTCTCGAGCTGGACGGGGGGCAGATGAGGCTCACCGTCAACCTCG gcaatgtgccctgcgtcctccgtgattctgggatctctgtcttcttacagAGGCTACGGTCTTAAGTTACGAAGGAACAATGTACATGAAGATAATGCTTCCTACTGCAATGGACATAGAAGCAGGTGATGTGTCCATACATTTCATGTCA---AGGGCATATGGCATCATGATGGCCACCACATCTAGGGAGTCAGCTGATACTCTGCACCTTAAACTGGATGGAGGGCAGATGCGGCTCACTGTTAACCTTGgtgagaatcttgagtaggccagggtggtcaaatgccaggatgagtcaggt Alignment from Spaln_nt2Genome AGGCCACGGTCTTAAGCTATGACGGCTCCATGTACATGAAGATCATGCTGCCCACTGCGATGCACACGGAAGCAGAGGATGTGTCCTTACGCTTCATGTCTCAGAGGGCATATGGACTCATGATGGCCACCACCTCCAGGGAGTCGGCTGACACTCTGCGTCTCGAGCTGGACGGGGGGCAGATGAGGCTCACCGTCAACCTCG gcaatgtgccctgcgtcctccgtgattctgggatctctgtcttcttacagAGGCTACGGTCTTAAGTTACGAAGGAACAATGTACATGAAGATAATGCTTCCTACTGCAATGGACATAGAAGCAGGTGATGTGTCCATACATTTCATGTC---AAGGGCATATGGCATCATGATGGCCACCACATCTAGGGAGTCAGCTGATACTCTGCACCTTAAACTGGATGGAGGGCAGATGCGGCTCACTGTTAACCTTGgtgagaatcttgagtaggccagggtggtcaaatgccaggatgagtcaggt Alignment from Pairagon AGGCCACGGTCTTAAGCTATGACGGCTCCATGTACATGAAGATCATGCTGCCCACTGCGATGCACACGGAAGCAGAGGATGTGTCCTTACGCTTCATGTCTCAGAGGGCATATGGACTCATGATGGCCACCACCTCCAGGGAGTCGGCTGACACTCTGCGTCTCGAGCTGGACGGGGGGCAGATGAGGCTCACCGTCAACCTCG gcaatgtgccctgcgtcctccgtgattctgggatctctgtcttcttacagAGGCTACGGTCTTAAGTTACGAAGGAACAATGTACATGAAGATAATGCTTCCTACTGCAATGGACATAGAAGCAGGTGATGTGTCCATACATTTCATGTC---AAGGGCATATGGCATCATGATGGCCACCACATCTAGGGAGTCAGCTGATACTCTGCACCTTAAACTGGATGGAGGGCAGATGCGGCTCACTGTTAACCTTGgtgagaatcttgagtaggccagggtggtcaaatgccaggatgagtcaggt Alignment from Exonerate_protein2genome AGGCCACGGTCTTAAGCTATGACGGCTCCATGTACATGAAGATCATGCTGCCCACTGCGATGCACACGGAAGCAGAGGATGTGTCCTTACGCTTCATGTCTCAGAGGGCATATGGACTCATGATGGCCACCACCTCCAGGGAGTCGGCTGACACTCTGCGTCTCGAGCTGGACGGGGGGCAGATGAGGCTCACCGTCAACCTCG gcaatgtgccctgcgtcctccgtgattctgggatctctgtcttcttacagAGGCTACGGTCTTAAGTTACGAAGGAACAATGTACATGAAGATAATGCTTCCTACTGCAATGGACATAGAAGCAGGTGATGTGTCCATACATTTCATGTCA---AGGGCATATGGCATCATGATGGCCACCACATCTAGGGAGTCAGCTGATACTCTGCACCTTAAACTGGATGGAGGGCAGATGCGGCTCACTGTTAACCTTGgtgagaatcttgagtaggccagggtggtcaaatgccaggatgagtcaggt Alignment from Exonerate_coding2genome AGGCCACGGTCTTAAGCTATGACGGCTCCATGTACATGAAGATCATGCTGCCCACTGCGATGCACACGGAAGCAGAGGATGTGTCCTTACGCTTCATGTCTCAGAGGGCATATGGACTCATGATGGCCACCACCTCCAGGGAGTCGGCTGACACTCTGCGTCTCGAGCTGGACGGGGGGCAGATGAGGCTCACCGTCAACCTCG gcaatgtgccctgcgtcctccgtgattctgggatctctgtcttcttacagAGGCTACGGTCTTAAGTTACGAAGGAACAATGTACATGAAGATAATGCTTCCTACTGCAATGGACATAGAAGCAGGTGATGTGTCCATACATTTCATGTCA---AGGGCATATGGCATCATGATGGCCACCACATCTAGGGAGTCAGCTGATACTCTGCACCTTAAACTGGATGGAGGGCAGATGCGGCTCACTGTTAACCTTGgtgagaatcttgagtaggccagggtggtcaaatgccaggatgagtcaggt Alignment from GeneWise AGGCCACGGTCTTAAGCTATGACGGCTCCATGTACATGAAGATCATGCTGCCCACTGCGATGCACACGGAAGCAGAGGATGTGTCCTTACGCTTCATGTCTCAGAGGGCATATGGACTCATGATGGCCACCACCTCCAGGGAGTCGGCTGACACTCTGCGTCTCGAGCTGGACGGGGGGCAGATGAGGCTCACCGTCAACCTCG gcaatgtgccctgcgtcctccgtgattctgggatctctgtcttcttacagAGGCTACGGTCTTAAGTTACGAAGGAACAATGTACATGAAGATAATGCTTCCTACTGCAATGGACATAGAAGCAGGTGATGTGTCCATACATTTCATGTCA---AGGGCATATGGCATCATGATGGCCACCACATCTAGGGAGTCAGCTGATACTCTGCACCTTAAACTGGATGGAGGGCAGATGCGGCTCACTGTTAACCTTGgtgagaatcttgagtaggccagggtggtcaaatgccaggatgagtcaggt #### Nrxn2_ID1760_11 --> 2 - 1 Original Alignment acTGCCTGCGCGTCGGCTGCGCACCCa ttgtattgctccatgtttcacaagtcttatttcttttctgtctgtattagatTGCCTGCGTGTGGGCTGCGCACCCagtaagggtcttgcctcttatgctatcttaggatgtatccaaagaaatagg Alignment from CESAR acTGCCTGCGCGTCGGCTGCGCACCCa ttgtattgctccatgtttcacaagtcttatttcttttctgtctgtattagatTGCCTGCGTGTGGGCTGCGCACCCagtaagggtcttgcctcttatgctatcttaggatgtatccaaagaaatagg Alignment from Spaln_aa2Genome ACTGCCTGCGCGTCGGCTGCGCACCCA ttgtattgctccatgtttcacaagtcttatttcttttctgtctgtattagATTGCCTGCGTGTGGGCTGCGCACCCAgtaagggtcttgcctcttatgctatcttaggatgtatccaaagaaatagg Alignment from Spaln_nt2Genome ACTGCCTGCGCGTCGGCTGCGCACCCA ttgtattgctccatgtttcacaagtcttatttcttttctgtctgtattagATTGCCTGCGTGTGGGCTGCGCACCCAgtaagggtcttgcctcttatgctatcttaggatgtatccaaagaaatagg Alignment from Pairagon ACTGCCTGCGCGTCGGCTGCGCACCCA ttgtattgctccatgtttcacaagtcttatttcttttctgtctgtattagATTGCCTGCGTGTGGGCTGCGCACCCAgtaagggtcttgcctcttatgctatcttaggatgtatccaaagaaatagg Alignment from Exonerate_protein2genome ACTGCCTGCGCGTCGGCTGCGCACCCA ttgtattgctccatgtttcacaagtcttatttcttttctgtctgtattagATTGCCTGCGTGTGGGCTGCGCACCCAgtaagggtcttgcctcttatgctatcttaggatgtatccaaagaaatagg Alignment from Exonerate_coding2genome ACTGCCTGCGCGTCGGCTGCGCACCCA ttgtattgctccatgtttcacaagtcttatttcttttctgtctgtattagATTGCCTGCGTGTGGGCTGCGCACCCAgtaagggtcttgcctcttatgctatcttaggatgtatccaaagaaatagg Alignment from GeneWise ACTGCCTGCGCGTCGGCTGCGCACCCA ttgtattgctccatgtttcacaagtcttatttcttttctgtctgtattagATTGCCTGCGTGTGGGCTGCGCACCCAgtaagggtcttgcctcttatgctatcttaggatgtatccaaagaaatagg #### Nrxn2_ID1761_12 --> 2 - 1 Original Alignment gtAAAGGCCCCGAGACACTGTTTGCGGGGCACAAGCTGAATGACAATGAATGGCACACGGTGAGGGTGGTCCGGCGTGGCAAGAGCCTGCAGCTGTCCGTGGACAACGTGACTGTGGAGg agacatgtagactttctgctgctttgtcaacaggatctgtttccctccaggtAAAGGTCCTGAAACACTGTTTGCAGGGCACAAACTAAATGACAATGAGTGGCACATGGTGAGGGTGGTCCGGCATGGCAAGAGCCTCCAGCTATTTGTTGACAACGTGACTGTGGAGggtaagcggctgagactgttgctggaagtgccccaaagtctcattaaggct Alignment from CESAR gtAAAGGCCCCGAGACACTGTTTGCGGGGCACAAGCTGAATGACAATGAATGGCACACGGTGAGGGTGGTCCGGCGTGGCAAGAGCCTGCAGCTGTCCGTGGACAACGTGACTGTGGAGg agacatgtagactttctgctgctttgtcaacaggatctgtttccctccaggtAAAGGTCCTGAAACACTGTTTGCAGGGCACAAACTAAATGACAATGAGTGGCACATGGTGAGGGTGGTCCGGCATGGCAAGAGCCTCCAGCTATTTGTTGACAACGTGACTGTGGAGggtaagcggctgagactgttgctggaagtgccccaaagtctcattaaggct Alignment from Spaln_aa2Genome GTAAAGGCCCCGAGACACTGTTTGCGGGGCACAAGCTGAATGACAATGAATGGCACACGGTGAGGGTGGTCCGGCGTGGCAAGAGCCTGCAGCTGTCCGTGGACAACGTGACTGTGGAGG agacatgtagactttctgctgctttgtcaacaggatctgtttccctccagGTAAAGGTCCTGAAACACTGTTTGCAGGGCACAAACTAAATGACAATGAGTGGCACATGGTGAGGGTGGTCCGGCATGGCAAGAGCCTCCAGCTATTTGTTGACAACGTGACTGTGGAGGgtaagcggctgagactgttgctggaagtgccccaaagtctcattaaggct Alignment from Spaln_nt2Genome GTAAAGGCCCCGAGACACTGTTTGCGGGGCACAAGCTGAATGACAATGAATGGCACACGGTGAGGGTGGTCCGGCGTGGCAAGAGCCTGCAGCTGTCCGTGGACAACGTGACTGTGGAGG agacatgtagactttctgctgctttgtcaacaggatctgtttccctccagGTAAAGGTCCTGAAACACTGTTTGCAGGGCACAAACTAAATGACAATGAGTGGCACATGGTGAGGGTGGTCCGGCATGGCAAGAGCCTCCAGCTATTTGTTGACAACGTGACTGTGGAGGgtaagcggctgagactgttgctggaagtgccccaaagtctcattaaggct Alignment from Pairagon GTAAAGGCCCCGAGACACTGTTTGCGGGGCACAAGCTGAATGACAATGAATGGCACACGGTGAGGGTGGTCCGGCGTGGCAAGAGCCTGCAGCTGTCCGTGGACAACGTGACTGTGGAGG agacatgtagactttctgctgctttgtcaacaggatctgtttccctccagGTAAAGGTCCTGAAACACTGTTTGCAGGGCACAAACTAAATGACAATGAGTGGCACATGGTGAGGGTGGTCCGGCATGGCAAGAGCCTCCAGCTATTTGTTGACAACGTGACTGTGGAGGgtaagcggctgagactgttgctggaagtgccccaaagtctcattaaggct Alignment from Exonerate_protein2genome GTAAAGGCCCCGAGACACTGTTTGCGGGGCACAAGCTGAATGACAATGAATGGCACACGGTGAGGGTGGTCCGGCGTGGCAAGAGCCTGCAGCTGTCCGTGGACAACGTGACTGTGGAGG agacatgtagactttctgctgctttgtcaacaggatctgtttccctccagGTAAAGGTCCTGAAACACTGTTTGCAGGGCACAAACTAAATGACAATGAGTGGCACATGGTGAGGGTGGTCCGGCATGGCAAGAGCCTCCAGCTATTTGTTGACAACGTGACTGTGGAGGgtaagcggctgagactgttgctggaagtgccccaaagtctcattaaggct Alignment from Exonerate_coding2genome GTAAAGGCCCCGAGACACTGTTTGCGGGGCACAAGCTGAATGACAATGAATGGCACACGGTGAGGGTGGTCCGGCGTGGCAAGAGCCTGCAGCTGTCCGTGGACAACGTGACTGTGGAGG agacatgtagactttctgctgctttgtcaacaggatctgtttccctccagGTAAAGGTCCTGAAACACTGTTTGCAGGGCACAAACTAAATGACAATGAGTGGCACATGGTGAGGGTGGTCCGGCATGGCAAGAGCCTCCAGCTATTTGTTGACAACGTGACTGTGGAGGgtaagcggctgagactgttgctggaagtgccccaaagtctcattaaggct Alignment from GeneWise CGTCGGCTGCGCACCCAGTAAAGGCCCCGAGACACTGTTTGCGGGGCACAAGCTGAATGACAATGAATGGCACACGGTGAGGGTGGTCCGGCGTGGCAAGAGCCTGCAGCTGTCCGTGGACAACGTGACTGTGGAGG agacatgtagactttctgctgctttgtcaacagGATCTGTTTCCCTCCAGGTAAAGGTCCTGAAACACTGTTTGCAGGGCACAAACTAAATGACAATGAGTGGCACATGGTGAGGGTGGTCCGGCATGGCAAGAGCCTCCAGCTATTTGTTGACAACGTGACTGTGGAGGgtaagcggctgagactgttgctggaagtgccccaaagtctcattaaggct #### Nrxn2_ID1765_15 --> 2 - 1 Original Alignment ggGAGTTGTATATCGGTGGCCTGAGCAAGAATATGTTCAGCAACCTGCCCAAGCTGGTGGCCTCTCGGGATGGCTTTCAAGGCTGCTTGGCTTCTGTGGACCTCAACGGACGCCTCCCAGACCTCATCGCTGACGCCCTGCACCGCATCGGGCAGGTGGAGAGGGGCTGTGATg gtacaattggtgacacagtggagtgtttagaataccttttttttaattagggGAGTTGTATATTGGTAGTTTAAGCAAAAACATGTTCAGCAACCTGCCTAAACTGGTAGCCTCCCGGGATGGCTTCCAAGGTTGCTTGACATCTGTAGATCTCAATGGACGTCTCCCAGATCTCATTGCTGATGCACTACACTGTGTTGGCCAGGTGGAGAGGGGCTGTGATggtgtgcgcaggtaatctgtggaaatgaagtaagtattctcatacaaggtg Alignment from CESAR ggGAGTTGTATATCGGTGGCCTGAGCAAGAATATGTTCAGCAACCTGCCCAAGCTGGTGGCCTCTCGGGATGGCTTTCAAGGCTGCTTGGCTTCTGTGGACCTCAACGGACGCCTCCCAGACCTCATCGCTGACGCCCTGCACCGCATCGGGCAGGTGGAGAGGGGCTGTGATg gtacaattggtgacacagtggagtgtttagaataccttttttttaattagggGAGTTGTATATTGGTAGTTTAAGCAAAAACATGTTCAGCAACCTGCCTAAACTGGTAGCCTCCCGGGATGGCTTCCAAGGTTGCTTGACATCTGTAGATCTCAATGGACGTCTCCCAGATCTCATTGCTGATGCACTACACTGTGTTGGCCAGGTGGAGAGGGGCTGTGATggtgtgcgcaggtaatctgtggaaatgaagtaagtattctcatacaaggtg Alignment from Spaln_aa2Genome GGGAGTTGTATATCGGTGGCCTGAGCAAGAATATGTTCAGCAACCTGCCCAAGCTGGTGGCCTCTCGGGATGGCTTTCAAGGCTGCTTGGCTTCTGTGGACCTCAACGGACGCCTCCCAGACCTCATCGCTGACGCCCTGCACCGCATCGGGCAGGTGGAGAGGGGCTGTGATG gtacaattggtgacacagtggagtgtttagaataccttttttttaattagGGGAGTTGTATATTGGTAGTTTAAGCAAAAACATGTTCAGCAACCTGCCTAAACTGGTAGCCTCCCGGGATGGCTTCCAAGGTTGCTTGACATCTGTAGATCTCAATGGACGTCTCCCAGATCTCATTGCTGATGCACTACACTGTGTTGGCCAGGTGGAGAGGGGCTGTGATGgtgtgcgcaggtaatctgtggaaatgaagtaagtattctcatacaaggtg Alignment from Spaln_nt2Genome GGGAGTTGTATATCGGTGGCCTGAGCAAGAATATGTTCAGCAACCTGCCCAAGCTGGTGGCCTCTCGGGATGGCTTTCAAGGCTGCTTGGCTTCTGTGGACCTCAACGGACGCCTCCCAGACCTCATCGCTGACGCCCTGCACCGCATCGGGCAGGTGGAGAGGGGCTGTGATG gtacaattggtgacacagtggagtgtttagaataccttttttttaattagGGGAGTTGTATATTGGTAGTTTAAGCAAAAACATGTTCAGCAACCTGCCTAAACTGGTAGCCTCCCGGGATGGCTTCCAAGGTTGCTTGACATCTGTAGATCTCAATGGACGTCTCCCAGATCTCATTGCTGATGCACTACACTGTGTTGGCCAGGTGGAGAGGGGCTGTGATGgtgtgcgcaggtaatctgtggaaatgaagtaagtattctcatacaaggtg Alignment from Pairagon GGGAGTTGTATATCGGTGGCCTGAGCAAGAATATGTTCAGCAACCTGCCCAAGCTGGTGGCCTCTCGGGATGGCTTTCAAGGCTGCTTGGCTTCTGTGGACCTCAACGGACGCCTCCCAGACCTCATCGCTGACGCCCTGCACCGCATCGGGCAGGTGGAGAGGGGCTGTGATG gtacaattggtgacacagtggagtgtttagaataccttttttttaattagGGGAGTTGTATATTGGTAGTTTAAGCAAAAACATGTTCAGCAACCTGCCTAAACTGGTAGCCTCCCGGGATGGCTTCCAAGGTTGCTTGACATCTGTAGATCTCAATGGACGTCTCCCAGATCTCATTGCTGATGCACTACACTGTGTTGGCCAGGTGGAGAGGGGCTGTGATGgtgtgcgcaggtaatctgtggaaatgaagtaagtattctcatacaaggtg Alignment from Exonerate_protein2genome GGGAGTTGTATATCGGTGGCCTGAGCAAGAATATGTTCAGCAACCTGCCCAAGCTGGTGGCCTCTCGGGATGGCTTTCAAGGCTGCTTGGCTTCTGTGGACCTCAACGGACGCCTCCCAGACCTCATCGCTGACGCCCTGCACCGCATCGGGCAGGTGGAGAGGGGCTGTGATG gtacaattggtgacacagtggagtgtttagaataccttttttttaattagGGGAGTTGTATATTGGTAGTTTAAGCAAAAACATGTTCAGCAACCTGCCTAAACTGGTAGCCTCCCGGGATGGCTTCCAAGGTTGCTTGACATCTGTAGATCTCAATGGACGTCTCCCAGATCTCATTGCTGATGCACTACACTGTGTTGGCCAGGTGGAGAGGGGCTGTGATGgtgtgcgcaggtaatctgtggaaatgaagtaagtattctcatacaaggtg Alignment from Exonerate_coding2genome GGGAGTTGTATATCGGTGGCCTGAGCAAGAATATGTTCAGCAACCTGCCCAAGCTGGTGGCCTCTCGGGATGGCTTTCAAGGCTGCTTGGCTTCTGTGGACCTCAACGGACGCCTCCCAGACCTCATCGCTGACGCCCTGCACCGCATCGGGCAGGTGGAGAGGGGCTGTGATG gtacaattggtgacacagtggagtgtttagaataccttttttttaattagGGGAGTTGTATATTGGTAGTTTAAGCAAAAACATGTTCAGCAACCTGCCTAAACTGGTAGCCTCCCGGGATGGCTTCCAAGGTTGCTTGACATCTGTAGATCTCAATGGACGTCTCCCAGATCTCATTGCTGATGCACTACACTGTGTTGGCCAGGTGGAGAGGGGCTGTGATGgtgtgcgcaggtaatctgtggaaatgaagtaagtattctcatacaaggtg Alignment from GeneWise GGGAGTTGTATATCGGTGGCCTGAGCAAGAATATGTTCAGCAACCTGCCCAAGCTGGTGGCCTCTCGGGATGGCTTTCAAGGCTGCTTGGCTTCTGTGGACCTCAACGGACGCCTCCCAGACCTCATCGCTGACGCCCTGCACCGCATCGGGCAGGTGGAGAGGGGCTGTGATG gtacaattggtgacacagtggagtgtttagaataccttttttttaattagGGGAGTTGTATATTGGTAGTTTAAGCAAAAACATGTTCAGCAACCTGCCTAAACTGGTAGCCTCCCGGGATGGCTTCCAAGGTTGCTTGACATCTGTAGATCTCAATGGACGTCTCCCAGATCTCATTGCTGATGCACTACACTGTGTTGGCCAGGTGGAGAGGGGCTGTGATGgtgtgcgcaggtaatctgtggaaatgaagtaagtattctcatacaaggtg #### Nrxn2_ID1766_16 --> 2 - 1 Original Alignment gcCCTAGCACCACCTGCACCGAAGAGTCTTGTGCCAACCAGGGCGTCTGTCTGCAGCAGTGGGATGGTTTTACCTGTGACTGTACTATGACTTCCTATGGAGGCCCTGTCTGCAATGACc aattgcacaatatggaatggttaataaacactgtgtctctttctcctcaggcCCTAGCACTAACTGCACTGAGGAGTCTTGTGCCAACCAGGGTGTCTGTTTGCAGCAGTGGGATGGCTTTACATGTGACTGTACAATGACTTCATATGGGGGGCCTGTCTGCAATGACcgtgagttggctgttgggataccttactcatctccccataggatggaggat Alignment from CESAR gcCCTAGCACCACCTGCACCGAAGAGTCTTGTGCCAACCAGGGCGTCTGTCTGCAGCAGTGGGATGGTTTTACCTGTGACTGTACTATGACTTCCTATGGAGGCCCTGTCTGCAATGACc aattgcacaatatggaatggttaataaacactgtgtctctttctcctcaggcCCTAGCACTAACTGCACTGAGGAGTCTTGTGCCAACCAGGGTGTCTGTTTGCAGCAGTGGGATGGCTTTACATGTGACTGTACAATGACTTCATATGGGGGGCCTGTCTGCAATGACcgtgagttggctgttgggataccttactcatctccccataggatggaggat Alignment from Spaln_aa2Genome GCCCTAGCACCACCTGCACCGAAGAGTCTTGTGCCAACCAGGGCGTCTGTCTGCAGCAGTGGGATGGTTTTACCTGTGACTGTACTATGACTTCCTATGGAGGCCCTGTCTGCAATGACC aattgcacaatatggaatggttaataaacactgtgtctctttctcctcagGCCCTAGCACTAACTGCACTGAGGAGTCTTGTGCCAACCAGGGTGTCTGTTTGCAGCAGTGGGATGGCTTTACATGTGACTGTACAATGACTTCATATGGGGGGCCTGTCTGCAATGACCgtgagttggctgttgggataccttactcatctccccataggatggaggat Alignment from Spaln_nt2Genome GCCCTAGCACCACCTGCACCGAAGAGTCTTGTGCCAACCAGGGCGTCTGTCTGCAGCAGTGGGATGGTTTTACCTGTGACTGTACTATGACTTCCTATGGAGGCCCTGTCTGCAATGACC aattgcacaatatggaatggttaataaacactgtgtctctttctcctcagGCCCTAGCACTAACTGCACTGAGGAGTCTTGTGCCAACCAGGGTGTCTGTTTGCAGCAGTGGGATGGCTTTACATGTGACTGTACAATGACTTCATATGGGGGGCCTGTCTGCAATGACCgtgagttggctgttgggataccttactcatctccccataggatggaggat Alignment from Pairagon GCCCTAGCACCACCTGCACCGAAGAGTCTTGTGCCAACCAGGGCGTCTGTCTGCAGCAGTGGGATGGTTTTACCTGTGACTGTACTATGACTTCCTATGGAGGCCCTGTCTGCAATGACC aattgcacaatatggaatggttaataaacactgtgtctctttctcctcagGCCCTAGCACTAACTGCACTGAGGAGTCTTGTGCCAACCAGGGTGTCTGTTTGCAGCAGTGGGATGGCTTTACATGTGACTGTACAATGACTTCATATGGGGGGCCTGTCTGCAATGACCgtgagttggctgttgggataccttactcatctccccataggatggaggat Alignment from Exonerate_protein2genome GCCCTAGCACCACCTGCACCGAAGAGTCTTGTGCCAACCAGGGCGTCTGTCTGCAGCAGTGGGATGGTTTTACCTGTGACTGTACTATGACTTCCTATGGAGGCCCTGTCTGCAATGACC aattgcacaatatggaatggttaataaacactgtgtctctttctcctcagGCCCTAGCACTAACTGCACTGAGGAGTCTTGTGCCAACCAGGGTGTCTGTTTGCAGCAGTGGGATGGCTTTACATGTGACTGTACAATGACTTCATATGGGGGGCCTGTCTGCAATGACCgtgagttggctgttgggataccttactcatctccccataggatggaggat Alignment from Exonerate_coding2genome GCCCTAGCACCACCTGCACCGAAGAGTCTTGTGCCAACCAGGGCGTCTGTCTGCAGCAGTGGGATGGTTTTACCTGTGACTGTACTATGACTTCCTATGGAGGCCCTGTCTGCAATGACC aattgcacaatatggaatggttaataaacactgtgtctctttctcctcagGCCCTAGCACTAACTGCACTGAGGAGTCTTGTGCCAACCAGGGTGTCTGTTTGCAGCAGTGGGATGGCTTTACATGTGACTGTACAATGACTTCATATGGGGGGCCTGTCTGCAATGACCgtgagttggctgttgggataccttactcatctccccataggatggaggat Alignment from GeneWise GCCCTAGCACCACCTGCACCGAAGAGTCTTGTGCCAACCAGGGCGTCTGTCTGCAGCAGTGGGATGGTTTTACCTGTGACTGTACTATGACTTCCTATGGAGGCCCTGTCTGCAATGACC aattgcacaatatggaatggttaataaacactgtgtctctttctcctcagGCCCTAGCACTAACTGCACTGAGGAGTCTTGTGCCAACCAGGGTGTCTGTTTGCAGCAGTGGGATGGCTTTACATGTGACTGTACAATGACTTCATATGGGGGGCCTGTCTGCAATGACCgtgagttggctgttgggataccttactcatctccccataggatggaggat #### Nrxn2_ID1773_17 --> 2 - 0 Original Alignment ctGGGACCACATACATCTTCGGGAAGGGGGGAGCGCTCATCACCTATACATGGCCTCCCAATGACCGGCCCAGTACACGGATGGACCGCCTGGCCGTAGGCTTCAGCACACACCAGCGGAGCGCTGTGCTGGTGCGAGTGGACAGTGCCTCCGGCCTCGGGGACTACTTGCAGCTGCACATT gaaattctactggcattccttcatctgtgcctgtctctgtcctaccccagaaGAGACCACATATATTTTCAAGAAGGGAGGAGCTCTCATTACATATACCTGGCCTCCCAATGATTGGCCAAGTACTTGGATGGACCGCCTCGCTATAGGATTCAGCACACATCAACAGAGTGCAGTGTTGGTACGTGTGGATAGTGCATCTGGGGTTGGGGAATTCTTGCAGTTACATGTTgtaagtatattcaaagctggtctgtctttccacagtctgatcagcctagg Alignment from CESAR ctGGGACCACATACATCTTCGGGAAGGGGGGAGCGCTCATCACCTATACATGGCCTCCCAATGACCGGCCCAGTACACGGATGGACCGCCTGGCCGTAGGCTTCAGCACACACCAGCGGAGCGCTGTGCTGGTGCGAGTGGACAGTGCCTCCGGCCTCGGGGACTACTTGCAGCTGCACATT gaaattctactggcattccttcatctgtgcctgtctctgtcctaccccagaaGAGACCACATATATTTTCAAGAAGGGAGGAGCTCTCATTACATATACCTGGCCTCCCAATGATTGGCCAAGTACTTGGATGGACCGCCTCGCTATAGGATTCAGCACACATCAACAGAGTGCAGTGTTGGTACGTGTGGATAGTGCATCTGGGGTTGGGGAATTCTTGCAGTTACATGTTgtaagtatattcaaagctggtctgtctttccacagtctgatcagcctagg Alignment from Spaln_aa2Genome CTGGGACCACATACATCTTCGGGAAGGGGGGAGCGCTCATCACCTATACATGGCCTCCCAATGACCGGCCCAGTACACGGATGGACCGCCTGGCCGTAGGCTTCAGCACACACCAGCGGAGCGCTGTGCTGGTGCGAGTGGACAGTGCCTCCGGCCTCGGGGACTACTTGCAGCTGCACATT gaaattctactggcattccttcatctgtgcctgtctctgtcctaccccagAAGAGACCACATATATTTTCAAGAAGGGAGGAGCTCTCATTACATATACCTGGCCTCCCAATGATTGGCCAAGTACTTGGATGGACCGCCTCGCTATAGGATTCAGCACACATCAACAGAGTGCAGTGTTGGTACGTGTGGATAGTGCATCTGGGGTTGGGGAATTCTTGCAGTTACATGTTgtaagtatattcaaagctggtctgtctttccacagtctgatcagcctagg Alignment from Spaln_nt2Genome CTGGGACCACATACATCTTCGGGAAGGGGGGAGCGCTCATCACCTATACATGGCCTCCCAATGACCGGCCCAGTACACGGATGGACCGCCTGGCCGTAGGCTTCAGCACACACCAGCGGAGCGCTGTGCTGGTGCGAGTGGACAGTGCCTCCGGCCTCGGGGACTACTTGCAGCTGCACATT gaaattctactggcattccttcatctgtgcctgtctctgtcctaccccagAAGAGACCACATATATTTTCAAGAAGGGAGGAGCTCTCATTACATATACCTGGCCTCCCAATGATTGGCCAAGTACTTGGATGGACCGCCTCGCTATAGGATTCAGCACACATCAACAGAGTGCAGTGTTGGTACGTGTGGATAGTGCATCTGGGGTTGGGGAATTCTTGCAGTTACATGTTgtaagtatattcaaagctggtctgtctttccacagtctgatcagcctagg Alignment from Pairagon CTGGGACCACATACATCTTCGGGAAGGGGGGAGCGCTCATCACCTATACATGGCCTCCCAATGACCGGCCCAGTACACGGATGGACCGCCTGGCCGTAGGCTTCAGCACACACCAGCGGAGCGCTGTGCTGGTGCGAGTGGACAGTGCCTCCGGCCTCGGGGACTACTTGCAGCTGCACATT gaaattctactggcattccttcatctgtgcctgtctctgtcctaccccagAAGAGACCACATATATTTTCAAGAAGGGAGGAGCTCTCATTACATATACCTGGCCTCCCAATGATTGGCCAAGTACTTGGATGGACCGCCTCGCTATAGGATTCAGCACACATCAACAGAGTGCAGTGTTGGTACGTGTGGATAGTGCATCTGGGGTTGGGGAATTCTTGCAGTTACATGTTgtaagtatattcaaagctggtctgtctttccacagtctgatcagcctagg Alignment from Exonerate_protein2genome CTGGGACCACATACATCTTCGGGAAGGGGGGAGCGCTCATCACCTATACATGGCCTCCCAATGACCGGCCCAGTACACGGATGGACCGCCTGGCCGTAGGCTTCAGCACACACCAGCGGAGCGCTGTGCTGGTGCGAGTGGACAGTGCCTCCGGCCTCGGGGACTACTTGCAGCTGCACATT gaaattctactggcattccttcatctgtgcctgtctctgtcctaccccagAAGAGACCACATATATTTTCAAGAAGGGAGGAGCTCTCATTACATATACCTGGCCTCCCAATGATTGGCCAAGTACTTGGATGGACCGCCTCGCTATAGGATTCAGCACACATCAACAGAGTGCAGTGTTGGTACGTGTGGATAGTGCATCTGGGGTTGGGGAATTCTTGCAGTTACATGTTgtaagtatattcaaagctggtctgtctttccacagtctgatcagcctagg Alignment from Exonerate_coding2genome CTGGGACCACATACATCTTCGGGAAGGGGGGAGCGCTCATCACCTATACATGGCCTCCCAATGACCGGCCCAGTACACGGATGGACCGCCTGGCCGTAGGCTTCAGCACACACCAGCGGAGCGCTGTGCTGGTGCGAGTGGACAGTGCCTCCGGCCTCGGGGACTACTTGCAGCTGCACATT gaaattctactggcattccttcatctgtgcctgtctctgtcctaccccagAAGAGACCACATATATTTTCAAGAAGGGAGGAGCTCTCATTACATATACCTGGCCTCCCAATGATTGGCCAAGTACTTGGATGGACCGCCTCGCTATAGGATTCAGCACACATCAACAGAGTGCAGTGTTGGTACGTGTGGATAGTGCATCTGGGGTTGGGGAATTCTTGCAGTTACATGTTgtaagtatattcaaagctggtctgtctttccacagtctgatcagcctagg Alignment from GeneWise CTGGGACCACATACATCTTCGGGAAGGGGGGAGCGCTCATCACCTATACATGGCCTCCCAATGACCGGCCCAGTACACGGATGGACCGCCTGGCCGTAGGCTTCAGCACACACCAGCGGAGCGCTGTGCTGGTGCGAGTGGACAGTGCCTCCGGCCTCGGGGACTACTTGCAGCTGCACATT gaaattctactggcattccttcatctgtgcctgtctctgtcctaccccagAAGAGACCACATATATTTTCAAGAAGGGAGGAGCTCTCATTACATATACCTGGCCTCCCAATGATTGGCCAAGTACTTGGATGGACCGCCTCGCTATAGGATTCAGCACACATCAACAGAGTGCAGTGTTGGTACGTGTGGATAGTGCATCTGGGGTTGGGGAATTCTTGCAGTTACATGTTgtaagtatattcaaagctggtctgtctttccacagtctgatcagcctagg #### Nrxn2_ID1777_19 --> 2 - 1 Original Alignment gaAACTTTGATAACGAGCGCCTGGCGATTGCTAGACAGAGAATCCCCTACCGGCTTGGTCGAGTAGTAGATGAGTGGCTGCTCGACAAAg actgcagtgtctgaattagaggcctactagagcttgtcccacacctgcaggaAACTTTGATAATGAGCACCTAGCAATCGCCAGGCAGAGAATTCCCTACCGGCTTGGTCGAGTAGTAGATGAGTGGCTGCTTGACAAGggttaggactaatacaagtagtgcaaggttgggccaaagaggaccaaacaa Alignment from CESAR gaAACTTTGATAACGAGCGCCTGGCGATTGCTAGACAGAGAATCCCCTACCGGCTTGGTCGAGTAGTAGATGAGTGGCTGCTCGACAAAg actgcagtgtctgaattagaggcctactagagcttgtcccacacctgcaggaAACTTTGATAATGAGCACCTAGCAATCGCCAGGCAGAGAATTCCCTACCGGCTTGGTCGAGTAGTAGATGAGTGGCTGCTTGACAAGggttaggactaatacaagtagtgcaaggttgggccaaagaggaccaaacaa Alignment from Spaln_aa2Genome GAAACTTTGATAACGAGCGCCTGGCGATTGCTAGACAGAGAATCCCCTACCGGCTTGGTCGAGTAGTAGATGAGTGGCTGCTCGACAAAG actgcagtgtctgaattagaggcctactagagcttgtcccacacctgcagGAAACTTTGATAATGAGCACCTAGCAATCGCCAGGCAGAGAATTCCCTACCGGCTTGGTCGAGTAGTAGATGAGTGGCTGCTTGACAAGGgttaggactaatacaagtagtgcaaggttgggccaaagaggaccaaacaa Alignment from Spaln_nt2Genome GAAACTTTGATAACGAGCGCCTGGCGATTGCTAGACAGAGAATCCCCTACCGGCTTGGTCGAGTAGTAGATGAGTGGCTGCTCGACAAAG actgcagtgtctgaattagaggcctactagagcttgtcccacacctgcagGAAACTTTGATAATGAGCACCTAGCAATCGCCAGGCAGAGAATTCCCTACCGGCTTGGTCGAGTAGTAGATGAGTGGCTGCTTGACAAGGgttaggactaatacaagtagtgcaaggttgggccaaagaggaccaaacaa Alignment from Pairagon GAAACTTTGATAACGAGCGCCTGGCGATTGCTAGACAGAGAATCCCCTACCGGCTTGGTCGAGTAGTAGATGAGTGGCTGCTCGACAAAG actgcagtgtctgaattagaggcctactagagcttgtcccacacctgcagGAAACTTTGATAATGAGCACCTAGCAATCGCCAGGCAGAGAATTCCCTACCGGCTTGGTCGAGTAGTAGATGAGTGGCTGCTTGACAAGGgttaggactaatacaagtagtgcaaggttgggccaaagaggaccaaacaa Alignment from Exonerate_protein2genome GAAACTTTGATAACGAGCGCCTGGCGATTGCTAGACAGAGAATCCCCTACCGGCTTGGTCGAGTAGTAGATGAGTGGCTGCTCGACAAAG actgcagtgtctgaattagaggcctactagagcttgtcccacacctgcagGAAACTTTGATAATGAGCACCTAGCAATCGCCAGGCAGAGAATTCCCTACCGGCTTGGTCGAGTAGTAGATGAGTGGCTGCTTGACAAGGgttaggactaatacaagtagtgcaaggttgggccaaagaggaccaaacaa Alignment from Exonerate_coding2genome GAAACTTTGATAACGAGCGCCTGGCGATTGCTAGACAGAGAATCCCCTACCGGCTTGGTCGAGTAGTAGATGAGTGGCTGCTCGACAAAG actgcagtgtctgaattagaggcctactagagcttgtcccacacctgcagGAAACTTTGATAATGAGCACCTAGCAATCGCCAGGCAGAGAATTCCCTACCGGCTTGGTCGAGTAGTAGATGAGTGGCTGCTTGACAAGGgttaggactaatacaagtagtgcaaggttgggccaaagaggaccaaacaa Alignment from GeneWise GAAACTTTGATAACGAGCGCCTGGCGATTGCTAGACAGAGAATCCCCTACCGGCTTGGTCGAGTAGTAGATGAGTGGCTGCTCGACAAAG actgcagtgtctgaattagaggcctactagagcttgtcccacacctgcagGAAACTTTGATAATGAGCACCTAGCAATCGCCAGGCAGAGAATTCCCTACCGGCTTGGTCGAGTAGTAGATGAGTGGCTGCTTGACAAGGgttaggactaatacaagtagtgcaaggttgggccaaagaggaccaaacaa #### Nrxn2_ID1781_20 --> 2 - 0 Original Alignment gaCGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCCGGCCTCTACTACAATGGGCTCAAGGTACTGGCGCTGGCCGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCCGTCCGTGCTGCTCAGTGCTGAGACCACTGCCACCACTCTGCTGGCCGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAG ttaaccgtaacccttcgtggccctccagatgtcctcttcttggtttctagggCGCCAGTTAACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGACGTCCCTTCCAGGGCCAGGTGTCTGGCCTATACTACAATGGGCTCAAGGTACTGGCCCTGGCTGCAGAGAGTGACCCCAATGTGCGGACTGAAGGCCACTTACGGCTAGTCGGGGAGGGGCTGTCCGTGCTGCTCAGTGCTGAGACCACTGGCACCACTCTGCTGGCTGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACTACCAGTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAGgtaagcactctatacgtatcatgcacaggcacatcctcagcaggctgagc Alignment from CESAR gaCGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCCGGCCTCTACTACAATGGGCTCAAGGTACTGGCGCTGGCCGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCCGTCCGTGCTGCTCAGTGCTGAGACCACTGCCACCACTCTGCTGGCCGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAG ttaaccgtaacccttcgtggccctccagatgtcctcttcttggtttctagggCGCCAGTTAACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGACGTCCCTTCCAGGGCCAGGTGTCTGGCCTATACTACAATGGGCTCAAGGTACTGGCCCTGGCTGCAGAGAGTGACCCCAATGTGCGGACTGAAGGCCACTTACGGCTAGTCGGGGAGGGGCTGTCCGTGCTGCTCAGTGCTGAGACCACTGGCACCACTCTGCTGGCTGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACTACCAGTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAGgtaagcactctatacgtatcatgcacaggcacatcctcagcaggctgagc Alignment from Spaln_aa2Genome GACGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCCGGCCTCTACTACAATGGGCTCAAGGTACTGGCGCTGGCCGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCCGTCCGTGCTGCTCAGTGCTGAGACCACTGCCACCACTCTGCTGGCCGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAG ttaaccgtaacccttcgtggccctccagatgtcctcttcttggtttctagGGCGCCAGTTAACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGACGTCCCTTCCAGGGCCAGGTGTCTGGCCTATACTACAATGGGCTCAAGGTACTGGCCCTGGCTGCAGAGAGTGACCCCAATGTGCGGACTGAAGGCCACTTACGGCTAGTCGGGGAGGGGCTGTCCGTGCTGCTCAGTGCTGAGACCACTGGCACCACTCTGCTGGCTGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACTACCAGTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAGgtaagcactctatacgtatcatgcacaggcacatcctcagcaggctgagc Alignment from Spaln_nt2Genome GACGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCCGGCCTCTACTACAATGGGCTCAAGGTACTGGCGCTGGCCGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCCGTCCGTGCTGCTCAGTGCTGAGACCACTGCCACCACTCTGCTGGCCGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAG ttaaccgtaacccttcgtggccctccagatgtcctcttcttggtttctagGGCGCCAGTTAACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGACGTCCCTTCCAGGGCCAGGTGTCTGGCCTATACTACAATGGGCTCAAGGTACTGGCCCTGGCTGCAGAGAGTGACCCCAATGTGCGGACTGAAGGCCACTTACGGCTAGTCGGGGAGGGGCTGTCCGTGCTGCTCAGTGCTGAGACCACTGGCACCACTCTGCTGGCTGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACTACCAGTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAGgtaagcactctatacgtatcatgcacaggcacatcctcagcaggctgagc Alignment from Pairagon GACGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCCGGCCTCTACTACAATGGGCTCAAGGTACTGGCGCTGGCCGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCCGTCCGTGCTGCTCAGTGCTGAGACCACTGCCACCACTCTGCTGGCCGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAG ttaaccgtaacccttcgtggccctccagatgtcctcttcttggtttctagGGCGCCAGTTAACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGACGTCCCTTCCAGGGCCAGGTGTCTGGCCTATACTACAATGGGCTCAAGGTACTGGCCCTGGCTGCAGAGAGTGACCCCAATGTGCGGACTGAAGGCCACTTACGGCTAGTCGGGGAGGGGCTGTCCGTGCTGCTCAGTGCTGAGACCACTGGCACCACTCTGCTGGCTGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACTACCAGTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAGgtaagcactctatacgtatcatgcacaggcacatcctcagcaggctgagc Alignment from Exonerate_protein2genome GACGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCCGGCCTCTACTACAATGGGCTCAAGGTACTGGCGCTGGCCGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCCGTCCGTGCTGCTCAGTGCTGAGACCACTGCCACCACTCTGCTGGCCGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAG ttaaccgtaacccttcgtggccctccagatgtcctcttcttggtttctagGGCGCCAGTTAACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGACGTCCCTTCCAGGGCCAGGTGTCTGGCCTATACTACAATGGGCTCAAGGTACTGGCCCTGGCTGCAGAGAGTGACCCCAATGTGCGGACTGAAGGCCACTTACGGCTAGTCGGGGAGGGGCTGTCCGTGCTGCTCAGTGCTGAGACCACTGGCACCACTCTGCTGGCTGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACTACCAGTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAGgtaagcactctatacgtatcatgcacaggcacatcctcagcaggctgagc Alignment from Exonerate_coding2genome GACGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCCGGCCTCTACTACAATGGGCTCAAGGTACTGGCGCTGGCCGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCCGTCCGTGCTGCTCAGTGCTGAGACCACTGCCACCACTCTGCTGGCCGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAG ttaaccgtaacccttcgtggccctccagatgtcctcttcttggtttctagGGCGCCAGTTAACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGACGTCCCTTCCAGGGCCAGGTGTCTGGCCTATACTACAATGGGCTCAAGGTACTGGCCCTGGCTGCAGAGAGTGACCCCAATGTGCGGACTGAAGGCCACTTACGGCTAGTCGGGGAGGGGCTGTCCGTGCTGCTCAGTGCTGAGACCACTGGCACCACTCTGCTGGCTGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACTACCAGTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAGgtaagcactctatacgtatcatgcacaggcacatcctcagcaggctgagc Alignment from GeneWise GACGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCCGGCCTCTACTACAATGGGCTCAAGGTACTGGCGCTGGCCGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCCGTCCGTGCTGCTCAGTGCTGAGACCACTGCCACCACTCTGCTGGCCGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAG ttaaccgtaacccttcgtggccctccagatgtcctcttcttggtttctagGGCGCCAGTTAACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGACGTCCCTTCCAGGGCCAGGTGTCTGGCCTATACTACAATGGGCTCAAGGTACTGGCCCTGGCTGCAGAGAGTGACCCCAATGTGCGGACTGAAGGCCACTTACGGCTAGTCGGGGAGGGGCTGTCCGTGCTGCTCAGTGCTGAGACCACTGGCACCACTCTGCTGGCTGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACTACCAGTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAGgtaagcactctatacgtatcatgcacaggcacatcctcagcaggctgagc #### Nt5c2_ID10042_11 --> 0 - 0 Original Alignment AAAATCATGACTTACCTGTTTGATTTCCCGCATGGCCCCAAG gaactcatgtgcatgttgttggcagacacgtgcacgtgcatccctcacagAAAATTATGACTTACCTCTTTTATTTCCCACATGGCCCTAAGgtatggtagacctggttgagctggcttactagcatcttatattaactaac Alignment from CESAR AAAATCATGACTTACCTGTTTGATTTCCCGCATGGCCCCAAG gaactcatgtgcatgttgttggcagacacgtgcacgtgcatccctcacagAAAATTATGACTTACCTCTTTTATTTCCCACATGGCCCTAAGgtatggtagacctggttgagctggcttactagcatcttatattaactaac Alignment from Spaln_aa2Genome AAAATCATGACTTACCTGTTTGATTTCCCGCATGGCCCCAAG gaactcatgtgcatgttgttggcagacacgtgcacgtgcatccctcacagAAAATTATGACTTACCTCTTTTATTTCCCACATGGCCCTAAGgtatggtagacctggttgagctggcttactagcatcttatattaactaac Alignment from Spaln_nt2Genome AAAATCATGACTTACCTGTTTGATTTCCCGCATGGCCCCAAG gaactcatgtgcatgttgttggcagacacgtgcacgtgcatccctcacagAAAATTATGACTTACCTCTTTTATTTCCCACATGGCCCTAAGgtatggtagacctggttgagctggcttactagcatcttatattaactaac Alignment from Pairagon AAAATCATGACTTACCTGTTTGATTTCCCGCATGGCCCCAAG gaactcatgtgcatgttgttggcagacacgtgcacgtgcatccctcacagAAAATTATGACTTACCTCTTTTATTTCCCACATGGCCCTAAGgtatggtagacctggttgagctggcttactagcatcttatattaactaac Alignment from Exonerate_protein2genome AAAATCATGACTTACCTGTTTGATTTCCCGCATGGCCCCAAG gaactcatgtgcatgttgttggcagacacgtgcacgtgcatccctcacagAAAATTATGACTTACCTCTTTTATTTCCCACATGGCCCTAAGgtatggtagacctggttgagctggcttactagcatcttatattaactaac Alignment from Exonerate_coding2genome gaactcatgtgcatgttgttggcagacacgtgcacgtgcatccctcacagaaaattatgacttacctcttttatttcccacatggccctaaggtatggtagacctggttgagctggcttactagcatcttatattaactaac Alignment from GeneWise AAAATCATGACTTACCTGTTTGATTTCCCGCATGGCCCCAAG gaactcatgtgcatgttgttggcagacacgtgcacgtgcatccctcacagAAAATTATGACTTACCTCTTTTATTTCCCACATGGCCCTAAGgtatggtagacctggttgagctggcttactagcatcttatattaactaac #### Nt5c2_ID10044_9 --> 0 - 0 Original Alignment GGCTCCCTTAAGGAGAAGACGGTTGAAAATCTTGAGAAGTATGTCGTCAAGGAT ggtactaggaattgtgaccttcatgcttttaacttcttgtcttggagcagGGCTCCCTTAAGGAGAAGACAGTTGAAAATCTTGAGAAATATGTTGTCAAGGATgtaagcggaaagccaatggggggttggcatgtccctcctgttgcttcttt Alignment from CESAR GGCTCCCTTAAGGAGAAGACGGTTGAAAATCTTGAGAAGTATGTCGTCAAGGAT ggtactaggaattgtgaccttcatgcttttaacttcttgtcttggagcagGGCTCCCTTAAGGAGAAGACAGTTGAAAATCTTGAGAAATATGTTGTCAAGGATgtaagcggaaagccaatggggggttggcatgtccctcctgttgcttcttt Alignment from Spaln_aa2Genome GGCTCCCTTAAGGAGAAGACGGTTGAAAATCTTGAGAAGTATGTCGTCAAGGAT ggtactaggaattgtgaccttcatgcttttaacttcttgtcttggagcagGGCTCCCTTAAGGAGAAGACAGTTGAAAATCTTGAGAAATATGTTGTCAAGGATgtaagcggaaagccaatggggggttggcatgtccctcctgttgcttcttt Alignment from Spaln_nt2Genome GGCTCCCTTAAGGAGAAGACGGTTGAAAATCTTGAGAAGTATGTCGTCAAGGAT ggtactaggaattgtgaccttcatgcttttaacttcttgtcttggagcagGGCTCCCTTAAGGAGAAGACAGTTGAAAATCTTGAGAAATATGTTGTCAAGGATgtaagcggaaagccaatggggggttggcatgtccctcctgttgcttcttt Alignment from Pairagon GGCTCCCTTAAGGAGAAGACGGTTGAAAATCTTGAGAAGTATGTCGTCAAGGAT ggtactaggaattgtgaccttcatgcttttaacttcttgtcttggagcagGGCTCCCTTAAGGAGAAGACAGTTGAAAATCTTGAGAAATATGTTGTCAAGGATgtaagcggaaagccaatggggggttggcatgtccctcctgttgcttcttt Alignment from Exonerate_protein2genome GGCTCCCTTAAGGAGAAGACGGTTGAAAATCTTGAGAAGTATGTCGTCAAGGAT ggtactaggaattgtgaccttcatgcttttaacttcttgtcttggagcagGGCTCCCTTAAGGAGAAGACAGTTGAAAATCTTGAGAAATATGTTGTCAAGGATgtaagcggaaagccaatggggggttggcatgtccctcctgttgcttcttt Alignment from Exonerate_coding2genome GGCTCCCTTAAGGAGAAGACGGTTGAAAATCTTGAGAAGTATGTCGTCAAGGAT ggtactaggaattgtgaccttcatgcttttaacttcttgtcttggagcagGGCTCCCTTAAGGAGAAGACAGTTGAAAATCTTGAGAAATATGTTGTCAAGGATgtaagcggaaagccaatggggggttggcatgtccctcctgttgcttcttt Alignment from GeneWise GGCTCCCTTAAGGAGAAGACGGTTGAAAATCTTGAGAAGTATGTCGTCAAGGAT ggtactaggaattgtgaccttcatgcttttaacttcttgtcttggagcagGGCTCCCTTAAGGAGAAGACAGTTGAAAATCTTGAGAAATATGTTGTCAAGGATgtaagcggaaagccaatggggggttggcatgtccctcctgttgcttcttt #### Nt5c2_ID10048_5 --> 1 - 2 Original Alignment aGGACTTGTCTTTGACACGCTCTATGGAAATCTTTTGAAAGTCGATGCCTATGGAAACCTCTTGGTGTGTGCACATGGATTTAACTTCATAAGAgg tgactaccctttatttcctcgtccttagatttttggtatttgacttccagaGGACTTGTCTTTGACACACTCTATGGAAATCTTTTGAAAGTTGATGCCTATGGGAACCTCTTGGTGTGCGTACATGGATTTAACTTTATAAGAgggtatgtcactcacacttgcatgggattgtgtagggggaggaagggtattt Alignment from CESAR aGGACTTGTCTTTGACACGCTCTATGGAAATCTTTTGAAAGTCGATGCCTATGGAAACCTCTTGGTGTGTGCACATGGATTTAACTTCATAAGAgg tgactaccctttatttcctcgtccttagatttttggtatttgacttccagaGGACTTGTCTTTGACACACTCTATGGAAATCTTTTGAAAGTTGATGCCTATGGGAACCTCTTGGTGTGCGTACATGGATTTAACTTTATAAGAgggtatgtcactcacacttgcatgggattgtgtagggggaggaagggtattt Alignment from Spaln_aa2Genome AGGACTTGTCTTTGACACGCTCTATGGAAATCTTTTGAAAGTCGATGCCTATGGAAACCTCTTGGTGTGTGCACATGGATTTAACTTCATAAGAGG tgactaccctttatttcctcgtccttagatttttggtatttgacttccagAGGACTTGTCTTTGACACACTCTATGGAAATCTTTTGAAAGTTGATGCCTATGGGAACCTCTTGGTGTGCGTACATGGATTTAACTTTATAAGAGGgtatgtcactcacacttgcatgggattgtgtagggggaggaagggtattt Alignment from Spaln_nt2Genome AGGACTTGTCTTTGACACGCTCTATGGAAATCTTTTGAAAGTCGATGCCTATGGAAACCTCTTGGTGTGTGCACATGGATTTAACTTCATAAGAGG tgactaccctttatttcctcgtccttagatttttggtatttgacttccagAGGACTTGTCTTTGACACACTCTATGGAAATCTTTTGAAAGTTGATGCCTATGGGAACCTCTTGGTGTGCGTACATGGATTTAACTTTATAAGAGGgtatgtcactcacacttgcatgggattgtgtagggggaggaagggtattt Alignment from Pairagon AGGACTTGTCTTTGACACGCTCTATGGAAATCTTTTGAAAGTCGATGCCTATGGAAACCTCTTGGTGTGTGCACATGGATTTAACTTCATAAGAGG tgactaccctttatttcctcgtccttagatttttggtatttgacttccagAGGACTTGTCTTTGACACACTCTATGGAAATCTTTTGAAAGTTGATGCCTATGGGAACCTCTTGGTGTGCGTACATGGATTTAACTTTATAAGAGGgtatgtcactcacacttgcatgggattgtgtagggggaggaagggtattt Alignment from Exonerate_protein2genome AGGACTTGTCTTTGACACGCTCTATGGAAATCTTTTGAAAGTCGATGCCTATGGAAACCTCTTGGTGTGTGCACATGGATTTAACTTCATAAGAGG tgactaccctttatttcctcgtccttagatttttggtatttgacttccagAGGACTTGTCTTTGACACACTCTATGGAAATCTTTTGAAAGTTGATGCCTATGGGAACCTCTTGGTGTGCGTACATGGATTTAACTTTATAAGAGGgtatgtcactcacacttgcatgggattgtgtagggggaggaagggtattt Alignment from Exonerate_coding2genome AGGACTTGTCTTTGACACGCTCTATGGAAATCTTTTGAAAGTCGATGCCTATGGAAACCTCTTGGTGTGTGCACATGGATTTAACTTCATAAGAGG tgactaccctttatttcctcgtccttagatttttggtatttgacttccagAGGACTTGTCTTTGACACACTCTATGGAAATCTTTTGAAAGTTGATGCCTATGGGAACCTCTTGGTGTGCGTACATGGATTTAACTTTATAAGAGGgtatgtcactcacacttgcatgggattgtgtagggggaggaagggtattt Alignment from GeneWise AGGACTTGTCTTTGACACGCTCTATGGAAATCTTTTGAAAGTCGATGCCTATGGAAACCTCTTGGTGTGTGCACATGGATTTAACTTCATAAGAGG tgactaccctttatttcctcgtccttagatttttggtatttgacttccagAGGACTTGTCTTTGACACACTCTATGGAAATCTTTTGAAAGTTGATGCCTATGGGAACCTCTTGGTGTGCGTACATGGATTTAACTTTATAAGAGGgtatgtcactcacacttgcatgggattgtgtagggggaggaagggtattt #### Nt5c2_ID10049_4 --> 2 - 2 Original Alignment tgTACAAGTCTCCAGAATATGAATCCCTTGGCTTTGAGCTTACTGTGGAGAGATTAGTTTCCATTGGCTATCCTCAGGAGCTGCTCAGCTTTGCATATGATTCTACATTCCCTACCag aatcctcctcaaccaacatgcatccatgtttttcttctgctttgtcctagtgTACAAGTCTCCACGATATGAATCCCTCGGCTTTGAGTTTTCTGTGGAGAGATTAGTCTCC---AGCTACCCTCAAGAGCTGCTCAGCTTTGCATATGACTCTACATTCCCTGCCaggtaagttttcatgctttttctaacaacaccattcatcatcccaagttcca Alignment from CESAR tgTACAAGTCTCCAGAATATGAATCCCTTGGCTTTGAGCTTACTGTGGAGAGATTAGTTTCCATTGGCTATCCTCAGGAGCTGCTCAGCTTTGCATATGATTCTACATTCCCTACCag aatcctcctcaaccaacatgcatccatgtttttcttctgctttgtcctagtgTACAAGTCTCCACGATATGAATCCCTCGGCTTTGAGTTTTCTGTGGAGAGATTAGTCTCC---AGCTACCCTCAAGAGCTGCTCAGCTTTGCATATGACTCTACATTCCCTGCCaggtaagttttcatgctttttctaacaacaccattcatcatcccaagttcca Alignment from Spaln_aa2Genome TGTACAAGTCTCCAGAATATGAATCCCTTGGCTTTGAGCTTACTGTGGAGAGATTAGTTTCCATTGGCTATCCTCAGGAGCTGCTCAGCTTTGCATATGATTCTACATTCCCTACCAG aatcctcctcaaccaacatgcatccatgtttttcttctgctttgtcctagTGTACAAGTCTCCACGATATGAATCCCTCGGCTTTGAGTTTTCTGTGGAGAGATTAGTCTCC---AGCTACCCTCAAGAGCTGCTCAGCTTTGCATATGACTCTACATTCCCTGCCAGgtaagttttcatgctttttctaacaacaccattcatcatcccaagttcca Alignment from Spaln_nt2Genome TGTACAAGTCTCCAGAATATGAATCCCTTGGCTTTGAGCTTACTGTGGAGAGATTAGTTTCCATTGGCTATCCTCAGGAGCTGCTCAGCTTTGCATATGATTCTACATTCCCTACCAG aatcctcctcaaccaacatgcatccatgtttttcttctgctttgtcctagTGTACAAGTCTCCACGATATGAATCCCTCGGCTTTGAGTTTTCTGTGGAGAGATTAGTCTCCA---GCTACCCTCAAGAGCTGCTCAGCTTTGCATATGACTCTACATTCCCTGCCAGgtaagttttcatgctttttctaacaacaccattcatcatcccaagttcca Alignment from Pairagon TGTACAAGTCTCCAGAATATGAATCCCTTGGCTTTGAGCTTACTGTGGAGAGATTAGTTTCCATTGGCTATCCTCAGGAGCTGCTCAGCTTTGCATATGATTCTACATTCCCTACCAG aatcctcctcaaccaacatgcatccatgtttttcttctgctttgtcctagTGTACAAGTCTCCACGATATGAATCCCTCGGCTTTGAGTTTTCTGTGGAGAGATTAGTCTCCA---GCTACCCTCAAGAGCTGCTCAGCTTTGCATATGACTCTACATTCCCTGCCAGgtaagttttcatgctttttctaacaacaccattcatcatcccaagttcca Alignment from Exonerate_protein2genome TGTACAAGTCTCCAGAATATGAATCCCTTGGCTTTGAGCTTACTGTGGAGAGATTAGTTTCCATTGGCTATCCTCAGGAGCTGCTCAGCTTTGCATATGATTCTACATTCCCTACCAG aatcctcctcaaccaacatgcatccatgtttttcttctgctttgtcctagTGTACAAGTCTCCACGATATGAATCCCTCGGCTTTGAGTTTTCTGTGGAGAGATTAGTCTCC---AGCTACCCTCAAGAGCTGCTCAGCTTTGCATATGACTCTACATTCCCTGCCAGgtaagttttcatgctttttctaacaacaccattcatcatcccaagttcca Alignment from Exonerate_coding2genome TGTACAAGTCTCCAGAATATGAATCCCTTGGCTTTGAGCTTACTGTGGAGAGATTAGTTTCCATTGGCTATCCTCAGGAGCTGCTCAGCTTTGCATATGATTCTACATTCCCTACCAG aatcctcctcaaccaacatgcatccatgtttttcttctgctttgtcctagTGTACAAGTCTCCACGATATGAATCCCTCGGCTTTGAGTTTTCTGTGGAGAGATTAGTCTCC---AGCTACCCTCAAGAGCTGCTCAGCTTTGCATATGACTCTACATTCCCTGCCAGgtaagttttcatgctttttctaacaacaccattcatcatcccaagttcca Alignment from GeneWise TGTACAAGTCTCCAGAATATGAATCCCTTGGCTTTGAGCTTACTGTGGAGAGATTAGTTTCCATTGGCTATCCTCAGGAGCTGCTCAGCTTTGCATATGATTCTACATTCCCTACCAG aatcctcctcaaccaacatgcatccatgtttttcttctgctttgtcctagTGTACAAGTCTCCACGATATGAATCCCTCGGCTTTGAGTTTTCTGTGGAGAGATTAGTCTCC---AGCTACCCTCAAGAGCTGCTCAGCTTTGCATATGACTCTACATTCCCTGCCAGgtaagttttcatgctttttctaacaacaccattcatcatcccaagttcca #### Nt5c2_ID10055_3 --> 1 - 1 Original Alignment gGTGTTTGTGAACCGAAGTTTAGCCATGGAAAAAATAAAGTGTTTTGGTTTTGATATGGATTATACCCTAGCCg tttgtatcattgtgccatggagtctttgctttgtttacttcctattgtaggGTCTTTGTGAACCATGGTCTGGCTATGGAAAGAATAAAGTGTATTGGTTTTGACATGGATTATACACTAGCTggtgagtagattgttcactctaggcacctgcacaggtttggcattgctgga Alignment from CESAR gGTGTTTGTGAACCGAAGTTTAGCCATGGAAAAAATAAAGTGTTTTGGTTTTGATATGGATTATACCCTAGCCg tttgtatcattgtgccatggagtctttgctttgtttacttcctattgtaggGTCTTTGTGAACCATGGTCTGGCTATGGAAAGAATAAAGTGTATTGGTTTTGACATGGATTATACACTAGCTggtgagtagattgttcactctaggcacctgcacaggtttggcattgctgga Alignment from Spaln_aa2Genome GGTGTTTGTGAACCGAAGTTTAGCCATGGAAAAAATAAAGTGTTTTGGTTTTGATATGGATTATACCCTAGCCG tttgtatcattgtgccatggagtctttgctttgtttacttcctattgtagGGTCTTTGTGAACCATGGTCTGGCTATGGAAAGAATAAAGTGTATTGGTTTTGACATGGATTATACACTAGCTGgtgagtagattgttcactctaggcacctgcacaggtttggcattgctgga Alignment from Spaln_nt2Genome GGTGTTTGTGAACCGAAGTTTAGCCATGGAAAAAATAAAGTGTTTTGGTTTTGATATGGATTATACCCTAGCCG tttgtatcattgtgccatggagtctttgctttgtttacttcctattgtagGGTCTTTGTGAACCATGGTCTGGCTATGGAAAGAATAAAGTGTATTGGTTTTGACATGGATTATACACTAGCTGgtgagtagattgttcactctaggcacctgcacaggtttggcattgctgga Alignment from Pairagon GGTGTTTGTGAACCGAAGTTTAGCCATGGAAAAAATAAAGTGTTTTGGTTTTGATATGGATTATACCCTAGCCG tttgtatcattgtgccatggagtctttgctttgtttacttcctattgtagGGTCTTTGTGAACCATGGTCTGGCTATGGAAAGAATAAAGTGTATTGGTTTTGACATGGATTATACACTAGCTGgtgagtagattgttcactctaggcacctgcacaggtttggcattgctgga Alignment from Exonerate_protein2genome GGTGTTTGTGAACCGAAGTTTAGCCATGGAAAAAATAAAGTGTTTTGGTTTTGATATGGATTATACCCTAGCCG tttgtatcattgtgccatggagtctttgctttgtttacttcctattgtagGGTCTTTGTGAACCATGGTCTGGCTATGGAAAGAATAAAGTGTATTGGTTTTGACATGGATTATACACTAGCTGgtgagtagattgttcactctaggcacctgcacaggtttggcattgctgga Alignment from Exonerate_coding2genome GGTGTTTGTGAACCGAAGTTTAGCCATGGAAAAAATAAAGTGTTTTGGTTTTGATATGGATTATACCCTAGCCG tttgtatcattgtgccatggagtctttgctttgtttacttcctattgtagGGTCTTTGTGAACCATGGTCTGGCTATGGAAAGAATAAAGTGTATTGGTTTTGACATGGATTATACACTAGCTGgtgagtagattgttcactctaggcacctgcacaggtttggcattgctgga Alignment from GeneWise GGTGTTTGTGAACCGAAGTTTAGCCATGGAAAAAATAAAGTGTTTTGGTTTTGATATGGATTATACCCTAGCCG tttgtatcattgtgccatggagtctttgctttgtttacttcctattgtagGGTCTTTGTGAACCATGGTCTGGCTATGGAAAGAATAAAGTGTATTGGTTTTGACATGGATTATACACTAGCTGgtgagtagattgttcactctaggcacctgcacaggtttggcattgctgga #### Nudt8_ID267_2 --> 1 - 0 Original Alignment tTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG ttgcttgacctagaccatttaaacattaatgaatctattatcctttttagtTTCCCAGGTGGTAAGTGCGACCCTGATGACCGAGATGTCGTAATACACACTGCACTTCAGGAGACACAGGAGGAGTTAGACTTG---GTACCCAAGGAGCATGTATGGGGGGTGCTGCAACCTGTGCATGATCAGgtacagacttttcaatagcgaaaccctatcatccagatgcctaacattag Alignment from CESAR tTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG ttgcttgacctagaccatttaaacattaatgaatctattatcctttttagtTTCCCAGGTGGTAAGTGCGACCCTGATGACCGAGATGTCGTAATACACACTGCACTTCAGGAGACACAGGAGGAGTTAGACTTG---GTACCCAAGGAGCATGTATGGGGGGTGCTGCAACCTGTGCATGATCAGgtacagacttttcaatagcgaaaccctatcatccagatgcctaacattag Alignment from Spaln_aa2Genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG ttgcttgacctagaccatttaaacattaatgaatctattatcctttttagTTTCCCAGGTGGTAAGTGCGACCCTGATGACCGAGATGTCGTAATACACACTGCACTTCAGGAGACACAGGAGGAGTTAGACTTGGTACCCAAGGAGCATGTATGGGGGGTGCTGCAACCTGTGCATGATCAGgtacagacttttcaatagcgaaaccctatcatccagatgcctaacattag Alignment from Spaln_nt2Genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG ttgcttgacctagaccatttaaacattaatgaatctattatcctttttagTTTCCCAGGTGGTAAGTGCGACCCTGATGACCGAGATGTCGTAATACACACTGCACTTCAGGAGACACAGGAGGAGTTAGACTT---GGTACCCAAGGAGCATGTATGGGGGGTGCTGCAACCTGTGCATGATCAGgtacagacttttcaatagcgaaaccctatcatccagatgcctaacattag Alignment from Pairagon TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG ttgcttgacctagaccatttaaacattaatgaatctattatcctttttagTTTCCCAGGTGGTAAGTGCGACCCTGATGACCGAGATGTCGTAATACACACTGCACTTCAGGAGACACAGGAGGAGTTAGACTT---GGTACCCAAGGAGCATGTATGGGGGGTGCTGCAACCTGTGCATGATCAGgtacagacttttcaatagcgaaaccctatcatccagatgcctaacattag Alignment from Exonerate_protein2genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG ttgcttgacctagaccatttaaacattaatgaatctattatcctttttagTTTCCCAGGTGGTAAGTGCGACCCTGATGACCGAGATGTCGTAATACACACTGCACTTCAGGAGACACAGGAGGAGTTAGACTTG---GTACCCAAGGAGCATGTATGGGGGGTGCTGCAACCTGTGCATGATCAGgtacagacttttcaatagcgaaaccctatcatccagatgcctaacattag Alignment from Exonerate_coding2genome ttgcttgacctagaccatttaaacattaatgaatctattatcctttttagtttcccaggtggtaagtgcgaccctgatgaccgagatgtcgtaatacacactgcacttcaggagacacaggaggagttagacttggtacccaaggagcatgtatggggggtgctgcaacctgtgcatgatcaggtacagacttttcaatagcgaaaccctatcatccagatgcctaacattag Alignment from GeneWise TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG ttgcttgacctagaccatttaaacattaatgaatctattatcctttttagTTTCCCAGGTGGTAAGTGCGACCCTGATGACCGAGATGTCGTAATACACACTGCACTTCAGGAGACACAGGAGGAGTTAGACTTG---GTACCCAAGGAGCATGTATGGGGGGTGCTGCAACCTGTGCATGATCAGgtacagacttttcaatagcgaaaccctatcatccagatgcctaacattag #### Nudt8_ID268_3 --> 0 - 0 Original Alignment GAAAAGGCAACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ttggcaacagacatctggacctgattgcgattcatcaatgtttgtttcagGACAAGGCAAGCTTAGTCCCTGTTCTTGCGAATGTGGGCCCTTTGGATCTACAGAGCCTGAGGCCCAACCTTGAGGAAgtaactggtgcactttttggaccggggaacttaggagtggatgcatgtcc Alignment from CESAR GAAAAGGCAACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ttggcaacagacatctggacctgattgcgattcatcaatgtttgtttcagGACAAGGCAAGCTTAGTCCCTGTTCTTGCGAATGTGGGCCCTTTGGATCTACAGAGCCTGAGGCCCAACCTTGAGGAAgtaactggtgcactttttggaccggggaacttaggagtggatgcatgtcc Alignment from Spaln_aa2Genome GAAAAGGCAACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ttggcaacagacatctggacctgattgcgattcatcaatgtttgtttcagGACAAGGCAAGCTTAGTCCCTGTTCTTGCGAATGTGGGCCCTTTGGATCTACAGAGCCTGAGGCCCAACCTTGAGGAAgtaactggtgcactttttggaccggggaacttaggagtggatgcatgtcc Alignment from Spaln_nt2Genome GAAAAGGCAACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ttggcaacagacatctggacctgattgcgattcatcaatgtttgtttcagGACAAGGCAAGCTTAGTCCCTGTTCTTGCGAATGTGGGCCCTTTGGATCTACAGAGCCTGAGGCCCAACCTTGAGGAAgtaactggtgcactttttggaccggggaacttaggagtggatgcatgtcc Alignment from Pairagon GAAAAGGCAACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ttggcaacagacatctggacctgattgcgattcatcaatgtttgtttcagGACAAGGCAAGCTTAGTCCCTGTTCTTGCGAATGTGGGCCCTTTGGATCTACAGAGCCTGAGGCCCAACCTTGAGGAAgtaactggtgcactttttggaccggggaacttaggagtggatgcatgtcc Alignment from Exonerate_protein2genome GAAAAGGCAACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ttggcaacagacatctggacctgattgcgattcatcaatgtttgtttcagGACAAGGCAAGCTTAGTCCCTGTTCTTGCGAATGTGGGCCCTTTGGATCTACAGAGCCTGAGGCCCAACCTTGAGGAAgtaactggtgcactttttggaccggggaacttaggagtggatgcatgtcc Alignment from Exonerate_coding2genome CGGGAAAAGGCAACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ttggcaacagacatctggacctgattgcgattcatcaatgtttgtttCAGGACAAGGCAAGCTTAGTCCCTGTTCTTGCGAATGTGGGCCCTTTGGATCTACAGAGCCTGAGGCCCAACCTTGAGGAAgtaactggtgcactttttggaccggggaacttaggagtggatgcatgtcc Alignment from GeneWise GAAAAGGCAACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ttggcaacagacatctggacctgattgcgattcatcaatgtttgtttcagGACAAGGCAAGCTTAGTCCCTGTTCTTGCGAATGTGGGCCCTTTGGATCTACAGAGCCTGAGGCCCAACCTTGAGGAAgtaactggtgcactttttggaccggggaacttaggagtggatgcatgtcc #### Nxf1_ID2343_3 --> 1 - 0 Original Alignment cAATCCCTATACCAACCGGCCTAATCGTCGGGGAGATGGTTGGCATGATCGAGATCGAATTCATATTACTGTACGGAGAGACAGAGCTCCTGCAGAGAGAGGAGGGGCTGGCACCAGTCAAGATGGGACCACCAAGAACTGGTTCAAGATTACA gatgcatatagaaacagaagtctttcatgccctgctctggttgtttttagcAATCCATAT---------CCTAATCGT------GATAGTTGGCATGATCGGGATAGGATCCATATTACTGTACAGAGAGACACAGCCCCT---------GGTGGGGTTGGTGCAAGTCAAGATGGGACTACCAAAAATTGGTTTAAAATCACAgtaatcattaatctcccctgctgtcctattcgcacttgtaagtgggatcc Alignment from CESAR cAATCCCTATACCAACCGGCCTAATCGTCGGGGAGATGGTTGGCATGATCGAGATCGAATTCATATTACTGTACGGAGAGACAGAGCTCCTGCAGAGAGAGGAGGGGCTGGCACCAGTCAAGATGGGACCACCAAGAACTGGTTCAAGATTACA gatgcatatagaaacagaagtctttcatgccctgctctggttgtttttagcAATCCATAT---------CCTAATCGT------GATAGTTGGCATGATCGGGATAGGATCCATATTACTGTACAGAGAGACACAGCCCCT---------GGTGGGGTTGGTGCAAGTCAAGATGGGACTACCAAAAATTGGTTTAAAATCACAgtaatcattaatctcccctgctgtcctattcgcacttgtaagtgggatcc Alignment from Spaln_aa2Genome CAATCCCTATACCAACCGGCCTAATCGTCGGGGAGATGGTTGGCATGATCGAGATCGAATTCATATTACTGTACGGAGAGACAGAGCTCCTGCAGAGAGAGGAGGGGCTGGCACCAGTCAAGATGGGACCACCAAGAACTGGTTCAAGATTACA gatgcatatagaaacagaagtctttcatgccctgctctggttgtttttagCAATCCATATCCTAATCGT---------------GATAGTTGGCATGATCGGGATAGGATCCATATTACTGTACAGAGAGACACAGCCCCT---------GGTGGGGTTGGTGCAAGTCAAGATGGGACTACCAAAAATTGGTTTAAAATCACAgtaatcattaatctcccctgctgtcctattcgcacttgtaagtgggatcc Alignment from Spaln_nt2Genome CAATCCCTATACCAACCGGCCTAATCGTCGGGGAGATGGTTGGCATGATCGAGATCGAATTCATATTACTGTACGGAGAGACAGAGCTCCTGCAGAGAGAGGAGGGGCTGGCACCAGTCAAGATGGGACCACCAAGAACTGGTTCAAGATTACA gatgcatatagaaacagaagtctttcatgccctgctctggttgtttttagCAATCCATAT---------CCTAATCGT------GATAGTTGGCATGATCGGGATAGGATCCATATTACTGTACAGAGAGACACAGCCCCT---------GGTGGGGTTGGTGCAAGTCAAGATGGGACTACCAAAAATTGGTTTAAAATCACAgtaatcattaatctcccctgctgtcctattcgcacttgtaagtgggatcc Alignment from Pairagon CAATCCCTATACCAACCGGCCTAATCGTCGGGGAGATGGTTGGCATGATCGAGATCGAATTCATATTACTGTACGGAGAGACAGAGCTCCTGCAGAGAGAGGAGGGGCTGGCACCAGTCAAGATGGGACCACCAAGAACTGGTTCAAGATTACA gatgcatatagaaacagaagtctttcatgccctgctctggttgtttttagCAATCCATAT---------CCTAATCGT------GATAGTTGGCATGATCGGGATAGGATCCATATTACTGTACAGAGAGACACAGCCCCT---------GGTGGGGTTGGTGCAAGTCAAGATGGGACTACCAAAAATTGGTTTAAAATCACAgtaatcattaatctcccctgctgtcctattcgcacttgtaagtgggatcc Alignment from Exonerate_protein2genome CAATCCCTATACCAACCGGCCTAATCGTCGGGGAGATGGTTGGCATGATCGAGATCGAATTCATATTACTGTACGGAGAGACAGAGCTCCTGCAGAGAGAGGAGGGGCTGGCACCAGTCAAGATGGGACCACCAAGAACTGGTTCAAGATTACA gatgcatatagaaacagaagtctttcatgccctgctctggttgtttttagCAATCCATATCCTAATCGT---------------GATAGTTGGCATGATCGGGATAGGATCCATATTACTGTACAGAGAGACACAGCCCCT---------GGTGGGGTTGGTGCAAGTCAAGATGGGACTACCAAAAATTGGTTTAAAATCACAgtaatcattaatctcccctgctgtcctattcgcacttgtaagtgggatcc Alignment from Exonerate_coding2genome CAATCCCTATACCAACCGGCCTAATCGTCGGGGAGATGGTTGGCATGATCGAGATCGAATTCATATTACTGTACGGAGAGACAGAGCTCCTGCAGAGAGAGGAGGGGCTGGCACCAGTCAAGATGGGACCACCAAGAACTGGTTCAAGATTACA gatgcatatagaaacagaagtctttcatgccctgctctggttgtttttagCAATCCATATCCTAATCGT---------------GATAGTTGGCATGATCGGGATAGGATCCATATTACTGTACAGAGAGACACAGCCCCT---------GGTGGGGTTGGTGCAAGTCAAGATGGGACTACCAAAAATTGGTTTAAAATCACAgtaatcattaatctcccctgctgtcctattcgcacttgtaagtgggatcc Alignment from GeneWise CAATCCCTATACCAACCGGCCTAATCGTCGGGGAGATGGTTGGCATGATCGAGATCGAATTCATATTACTGTACGGAGAGACAGAGCTCCTGCAGAGAGAGGAGGGGCTGGCACCAGTCAAGATGGGACCACCAAGAACTGGTTCAAGATTACA gatgcatatagaaacagaagtctttcatgccctgctctggttgtttttagCAATCCATATCCTAATCGT---------------GATAGTTGGCATGATCGGGATAGGATCCATATTACTGTACAGAGAGACACAGCCCCT---------GGTGGGGTTGGTGCAAGTCAAGATGGGACTACCAAAAATTGGTTTAAAATCACAgtaatcattaatctcccctgctgtcctattcgcacttgtaagtgggatcc #### Nxf1_ID2345_5 --> 0 - 0 Original Alignment TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATC---CAGGATCGAGAAAACAGAAGG tgagtagcttatgttcggtgaggggtatgtctgctaactcttgaatgcagTTTCACTATGAAAATACACGCACTCATTTCTTTGTAGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTGAACCATAAGATCATCCAGGATCGAGAGAACAGACGGgtagctagacagccgacattaatagaatggactggttgtaacaacttttc Alignment from CESAR TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAG---ATCCAGGATCGAGAAAACAGAAGG tgagtagcttatgttcggtgaggggtatgtctgctaactcttgaatgcagTTTCACTATGAAAATACACGCACTCATTTCTTTGTAGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTGAACCATAAGATCATCCAGGATCGAGAGAACAGACGGgtagctagacagccgacattaatagaatggactggttgtaacaacttttc Alignment from Spaln_aa2Genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAG---ATCCAGGATCGAGAAAACAGAAGG tgagtagcttatgttcggtgaggggtatgtctgctaactcttgaatgcagTTTCACTATGAAAATACACGCACTCATTTCTTTGTAGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTGAACCATAAGATCATCCAGGATCGAGAGAACAGACGGgtagctagacagccgacattaatagaatggactggttgtaacaacttttc Alignment from Spaln_nt2Genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAG---ATCCAGGATCGAGAAAACAGAAGG tgagtagcttatgttcggtgaggggtatgtctgctaactcttgaatgcagTTTCACTATGAAAATACACGCACTCATTTCTTTGTAGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTGAACCATAAGATCATCCAGGATCGAGAGAACAGACGGgtagctagacagccgacattaatagaatggactggttgtaacaacttttc Alignment from Pairagon TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAG---ATCCAGGATCGAGAAAACAGAAGG tgagtagcttatgttcggtgaggggtatgtctgctaactcttgaatgcagTTTCACTATGAAAATACACGCACTCATTTCTTTGTAGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTGAACCATAAGATCATCCAGGATCGAGAGAACAGACGGgtagctagacagccgacattaatagaatggactggttgtaacaacttttc Alignment from Exonerate_protein2genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAG---ATCCAGGATCGAGAAAACAGAAGG tgagtagcttatgttcggtgaggggtatgtctgctaactcttgaatgcagTTTCACTATGAAAATACACGCACTCATTTCTTTGTAGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTGAACCATAAGATCATCCAGGATCGAGAGAACAGACGGgtagctagacagccgacattaatagaatggactggttgtaacaacttttc Alignment from Exonerate_coding2genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAG---ATCCAGGATCGAGAAAACAGAAGG tgagtagcttatgttcggtgaggggtatgtctgctaactcttgaatgcagTTTCACTATGAAAATACACGCACTCATTTCTTTGTAGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTGAACCATAAGATCATCCAGGATCGAGAGAACAGACGGgtagctagacagccgacattaatagaatggactggttgtaacaacttttc Alignment from GeneWise TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATC---CAGGATCGAGAAAACAGAAGG tgagtagcttatgttcggtgaggggtatgtctgctaactcttgaatgcagTTTCACTATGAAAATACACGCACTCATTTCTTTGTAGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTGAACCATAAGATCATCCAGGATCGAGAGAACAGACGGgtagctagacagccgacattaatagaatggactggttgtaacaacttttc #### Nxf1_ID2346_6 --> 0 - 0 Original Alignment ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttctacattgtcaccaattgtcctgtctccgacctttctgctctccagATATCAATCATAATCAATACTTCTGCTCCAGCCTACACTGTGCAGAACAAAGTAAAGGCTGAACAGATAGAGCAGCTCAAAgtaatcttgcataagtctacctgaccaccccataaactatagtgagagtt Alignment from CESAR ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttctacattgtcaccaattgtcctgtctccgacctttctgctctccagATATCAATCATAATCAATACTTCTGCTCCAGCCTACACTGTGCAGAACAAAGTAAAGGCTGAACAGATAGAGCAGCTCAAAgtaatcttgcataagtctacctgaccaccccataaactatagtgagagtt Alignment from Spaln_aa2Genome ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttctacattgtcaccaattgtcctgtctccgacctttctgctctccagATATCAATCATAATCAATACTTCTGCTCCAGCCTACACTGTGCAGAACAAAGTAAAGGCTGAACAGATAGAGCAGCTCAAAgtaatcttgcataagtctacctgaccaccccataaactatagtgagagtt Alignment from Spaln_nt2Genome ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttctacattgtcaccaattgtcctgtctccgacctttctgctctccagATATCAATCATAATCAATACTTCTGCTCCAGCCTACACTGTGCAGAACAAAGTAAAGGCTGAACAGATAGAGCAGCTCAAAgtaatcttgcataagtctacctgaccaccccataaactatagtgagagtt Alignment from Pairagon ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttctacattgtcaccaattgtcctgtctccgacctttctgctctccagATATCAATCATAATCAATACTTCTGCTCCAGCCTACACTGTGCAGAACAAAGTAAAGGCTGAACAGATAGAGCAGCTCAAAgtaatcttgcataagtctacctgaccaccccataaactatagtgagagtt Alignment from Exonerate_protein2genome ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttctacattgtcaccaattgtcctgtctccgacctttctgctctccagATATCAATCATAATCAATACTTCTGCTCCAGCCTACACTGTGCAGAACAAAGTAAAGGCTGAACAGATAGAGCAGCTCAAAgtaatcttgcataagtctacctgaccaccccataaactatagtgagagtt Alignment from Exonerate_coding2genome ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttctacattgtcaccaattgtcctgtctccgacctttctgctctccagATATCAATCATAATCAATACTTCTGCTCCAGCCTACACTGTGCAGAACAAAGTAAAGGCTGAACAGATAGAGCAGCTCAAAgtaatcttgcataagtctacctgaccaccccataaactatagtgagagtt Alignment from GeneWise ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttctacattgtcaccaattgtcctgtctccgacctttctgctctccagATATCAATCATAATCAATACTTCTGCTCCAGCCTACACTGTGCAGAACAAAGTAAAGGCTGAACAGATAGAGCAGCTCAAAgtaatcttgcataagtctacctgaccaccccataaactatagtgagagtt #### Nxf1_ID2355_15 --> 1 - 1 Original Alignment aAAAAACTTAGCTGAATATGTCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCa tgtaccatgtaccataaaattctctgagttcttgtgcctcttcccatcagaAAAAACCTAGCAGAATATGCTAAAGACTGTAGAAATGTAAAGAAGCTTAAGGAACCCagtaagtgggctctataggactccctggctagagaaatttggagaagaaag Alignment from CESAR aAAAAACTTAGCTGAATATGTCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCa tgtaccatgtaccataaaattctctgagttcttgtgcctcttcccatcagaAAAAACCTAGCAGAATATGCTAAAGACTGTAGAAATGTAAAGAAGCTTAAGGAACCCagtaagtgggctctataggactccctggctagagaaatttggagaagaaag Alignment from Spaln_aa2Genome AAAAAACTTAGCTGAATATGTCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCA tgtaccatgtaccataaaattctctgagttcttgtgcctcttcccatcagAAAAAACCTAGCAGAATATGCTAAAGACTGTAGAAATGTAAAGAAGCTTAAGGAACCCAgtaagtgggctctataggactccctggctagagaaatttggagaagaaag Alignment from Spaln_nt2Genome AAAAAACTTAGCTGAATATGTCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCA tgtaccatgtaccataaaattctctgagttcttgtgcctcttcccatcagAAAAAACCTAGCAGAATATGCTAAAGACTGTAGAAATGTAAAGAAGCTTAAGGAACCCAgtaagtgggctctataggactccctggctagagaaatttggagaagaaag Alignment from Pairagon AAAAAACTTAGCTGAATATGTCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCA tgtaccatgtaccataaaattctctgagttcttgtgcctcttcccatcagAAAAAACCTAGCAGAATATGCTAAAGACTGTAGAAATGTAAAGAAGCTTAAGGAACCCAgtaagtgggctctataggactccctggctagagaaatttggagaagaaag Alignment from Exonerate_protein2genome AAAAAACTTAGCTGAATATGTCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCA tgtaccatgtaccataaaattctctgagttcttgtgcctcttcccatcagAAAAAACCTAGCAGAATATGCTAAAGACTGTAGAAATGTAAAGAAGCTTAAGGAACCCAgtaagtgggctctataggactccctggctagagaaatttggagaagaaag Alignment from Exonerate_coding2genome AAAAAACTTAGCTGAATATGTCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCA tgtaccatgtaccataaaattctctgagttcttgtgcctcttcccatcagAAAAAACCTAGCAGAATATGCTAAAGACTGTAGAAATGTAAAGAAGCTTAAGGAACCCAgtaagtgggctctataggactccctggctagagaaatttggagaagaaag Alignment from GeneWise AAAAAACTTAGCTGAATATGTCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCA tgtaccatgtaccataaaattctctgagttcttgtgcctcttcccatcagAAAAAACCTAGCAGAATATGCTAAAGACTGTAGAAATGTAAAGAAGCTTAAGGAACCCAgtaagtgggctctataggactccctggctagagaaatttggagaagaaag #### Nxf1_ID2356_16 --> 2 - 0 Original Alignment ccCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA gagatttaattctaaagcttacaaatgcgacatgtctcctctctgtgcagccCAGCGATTCCGACTCCTAAAGCATACACGTTTGAATGTTGTTGCCTTTCTTAATGCATTACCCAAAACTCAACATGACGTCAATGCATTTGTAGTAGACATAAGTGCACAAACAgtgagtatctgtttgatgaaaccaaaaagtggggtgatcattatgctcat Alignment from CESAR ccCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA gagatttaattctaaagcttacaaatgcgacatgtctcctctctgtgcagccCAGCGATTCCGACTCCTAAAGCATACACGTTTGAATGTTGTTGCCTTTCTTAATGCATTACCCAAAACTCAACATGACGTCAATGCATTTGTAGTAGACATAAGTGCACAAACAgtgagtatctgtttgatgaaaccaaaaagtggggtgatcattatgctcat Alignment from Spaln_aa2Genome CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA gagatttaattctaaagcttacaaatgcgacatgtctcctctctgtgcagCCCAGCGATTCCGACTCCTAAAGCATACACGTTTGAATGTTGTTGCCTTTCTTAATGCATTACCCAAAACTCAACATGACGTCAATGCATTTGTAGTAGACATAAGTGCACAAACAgtgagtatctgtttgatgaaaccaaaaagtggggtgatcattatgctcat Alignment from Spaln_nt2Genome CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA gagatttaattctaaagcttacaaatgcgacatgtctcctctctgtgcagCCCAGCGATTCCGACTCCTAAAGCATACACGTTTGAATGTTGTTGCCTTTCTTAATGCATTACCCAAAACTCAACATGACGTCAATGCATTTGTAGTAGACATAAGTGCACAAACAgtgagtatctgtttgatgaaaccaaaaagtggggtgatcattatgctcat Alignment from Pairagon CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA gagatttaattctaaagcttacaaatgcgacatgtctcctctctgtgcagCCCAGCGATTCCGACTCCTAAAGCATACACGTTTGAATGTTGTTGCCTTTCTTAATGCATTACCCAAAACTCAACATGACGTCAATGCATTTGTAGTAGACATAAGTGCACAAACAgtgagtatctgtttgatgaaaccaaaaagtggggtgatcattatgctcat Alignment from Exonerate_protein2genome CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACAAGCACATTACTGTGT gagatttaattctaaagcttacaaatgcgacatgtctcctctctgtgcagCCCAGCGATTCCGACTCCTAAAGCATACACGTTTGAATGTTGTTGCCTTTCTTAATGCATTACCCAAAACTCAACATGACGTCAATGCATTTGTAGTAGACATAAGTGCACAAACAGTGAGTATCTGTTTGatgaaaccaaaaagtggggtgatcattatgctcat Alignment from Exonerate_coding2genome CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACAAGCACATTACTGTGT gagatttaattctaaagcttacaaatgcgacatgtctcctctctgtgcagCCCAGCGATTCCGACTCCTAAAGCATACACGTTTGAATGTTGTTGCCTTTCTTAATGCATTACCCAAAACTCAACATGACGTCAATGCATTTGTAGTAGACATAAGTGCACAAACAGTGAGTATCTGTTTGatgaaaccaaaaagtggggtgatcattatgctcat Alignment from GeneWise CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA gagatttaattctaaagcttacaaatgcgacatgtctcctctctgtgcagCCCAGCGATTCCGACTCCTAAAGCATACACGTTTGAATGTTGTTGCCTTTCTTAATGCATTACCCAAAACTCAACATGACGTCAATGCATTTGTAGTAGACATAAGTGCACAAACAgtgagtatctgtttgatgaaaccaaaaagtggggtgatcattatgctcat #### Nxf1_ID2360_20 --> 1 - 0 Original Alignment gTGCCTTCAAGACAATAACTGGGACTACACCAGATCTGCTCAGGCCTTCACTCTTCTCAAG gcatctgtcccagtctggtgtacataccacagtgtgtgcttgtttgttaggTGCCTTCAAGACAATAATTGGGACTATACCAGATCTGCGCAAGCCTTTACCCTTCTCAAGgtatttcatctattgtgttgaacacaattactttttgagcattttgaacc Alignment from CESAR gTGCCTTCAAGACAATAACTGGGACTACACCAGATCTGCTCAGGCCTTCACTCTTCTCAAG gcatctgtcccagtctggtgtacataccacagtgtgtgcttgtttgttaggTGCCTTCAAGACAATAATTGGGACTATACCAGATCTGCGCAAGCCTTTACCCTTCTCAAGgtatttcatctattgtgttgaacacaattactttttgagcattttgaacc Alignment from Spaln_aa2Genome GTGCCTTCAAGACAATAACTGGGACTACACCAGATCTGCTCAGGCCTTCACTCTTCTCAAG gcatctgtcccagtctggtgtacataccacagtgtgtgcttgtttgttagGTGCCTTCAAGACAATAATTGGGACTATACCAGATCTGCGCAAGCCTTTACCCTTCTCAAGgtatttcatctattgtgttgaacacaattactttttgagcattttgaacc Alignment from Spaln_nt2Genome GTGCCTTCAAGACAATAACTGGGACTACACCAGATCTGCTCAGGCCTTCACTCTTCTCAAG gcatctgtcccagtctggtgtacataccacagtgtgtgcttgtttgttagGTGCCTTCAAGACAATAATTGGGACTATACCAGATCTGCGCAAGCCTTTACCCTTCTCAAGgtatttcatctattgtgttgaacacaattactttttgagcattttgaacc Alignment from Pairagon GTGCCTTCAAGACAATAACTGGGACTACACCAGATCTGCTCAGGCCTTCACTCTTCTCAAG gcatctgtcccagtctggtgtacataccacagtgtgtgcttgtttgttagGTGCCTTCAAGACAATAATTGGGACTATACCAGATCTGCGCAAGCCTTTACCCTTCTCAAGgtatttcatctattgtgttgaacacaattactttttgagcattttgaacc Alignment from Exonerate_protein2genome GTGCCTTCAAGACAATAACTGGGACTACACCAGATCTGCTCAGGCCTTCACTCTTCTCAAG gcatctgtcccagtctggtgtacataccacagtgtgtgcttgtttgttagGTGCCTTCAAGACAATAATTGGGACTATACCAGATCTGCGCAAGCCTTTACCCTTCTCAAGgtatttcatctattgtgttgaacacaattactttttgagcattttgaacc Alignment from Exonerate_coding2genome GTGCCTTCAAGACAATAACTGGGACTACACCAGATCTGCTCAGGCCTTCACTCTTCTCAAG gcatctgtcccagtctggtgtacataccacagtgtgtgcttgtttgttagGTGCCTTCAAGACAATAATTGGGACTATACCAGATCTGCGCAAGCCTTTACCCTTCTCAAGgtatttcatctattgtgttgaacacaattactttttgagcattttgaacc Alignment from GeneWise GTGCCTTCAAGACAATAACTGGGACTACACCAGATCTGCTCAGGCCTTCACTCTTCTCAAG gcatctgtcccagtctggtgtacataccacagtgtgtgcttgtttgttagGTGCCTTCAAGACAATAATTGGGACTATACCAGATCTGCGCAAGCCTTTACCCTTCTCAAGgtatttcatctattgtgttgaacacaattactttttgagcattttgaacc #### Obfc1_ID10232_4 --> 2 - 1 Original Alignment acCCAGCTATTCTGAGCACTGCGAGAGAGCTTAGCATGACATCACAGCTTAAGAAGCTGCAGGAGACCATCGAGCAGAAAACCAGGATAGGGATTGGAGATATCATCCGAGTCCGAGGCTCTGTGCGCATGTTCCGAGAAGAGCGAGAGATCTGTGCCAACATTTATt ctgaaacttcttcaaaccatgacaggtaagctctttccttttatttccagacCCAGCTATCCTGAGCACTGCACGTGAGCTTAGCACGACATCACAACTTAAAAAGCTTCAGGAAACTATTGAGCAGAAAACTCAGATAGGGATTGGAGATATCATCAGAATCAGAGGCTCTGTATGCATGTTTAGAGAGGATCAAGAGATTTGTGCCAACATTTACtgtgagaatgaattgataccctccacatggtcatactcttagataagtcct Alignment from CESAR acCCAGCTATTCTGAGCACTGCGAGAGAGCTTAGCATGACATCACAGCTTAAGAAGCTGCAGGAGACCATCGAGCAGAAAACCAGGATAGGGATTGGAGATATCATCCGAGTCCGAGGCTCTGTGCGCATGTTCCGAGAAGAGCGAGAGATCTGTGCCAACATTTATt ctgaaacttcttcaaaccatgacaggtaagctctttccttttatttccagacCCAGCTATCCTGAGCACTGCACGTGAGCTTAGCACGACATCACAACTTAAAAAGCTTCAGGAAACTATTGAGCAGAAAACTCAGATAGGGATTGGAGATATCATCAGAATCAGAGGCTCTGTATGCATGTTTAGAGAGGATCAAGAGATTTGTGCCAACATTTACtgtgagaatgaattgataccctccacatggtcatactcttagataagtcct Alignment from Spaln_aa2Genome ACCCAGCTATTCTGAGCACTGCGAGAGAGCTTAGCATGACATCACAGCTTAAGAAGCTGCAGGAGACCATCGAGCAGAAAACCAGGATAGGGATTGGAGATATCATCCGAGTCCGAGGCTCTGTGCGCATGTTCCGAGAAGAGCGAGAGATCTGTGCCAACATTTATT ctgaaacttcttcaaaccatgacaggtaagctctttccttttatttccagACCCAGCTATCCTGAGCACTGCACGTGAGCTTAGCACGACATCACAACTTAAAAAGCTTCAGGAAACTATTGAGCAGAAAACTCAGATAGGGATTGGAGATATCATCAGAATCAGAGGCTCTGTATGCATGTTTAGAGAGGATCAAGAGATTTGTGCCAACATTTACTgtgagaatgaattgataccctccacatggtcatactcttagataagtcct Alignment from Spaln_nt2Genome ACCCAGCTATTCTGAGCACTGCGAGAGAGCTTAGCATGACATCACAGCTTAAGAAGCTGCAGGAGACCATCGAGCAGAAAACCAGGATAGGGATTGGAGATATCATCCGAGTCCGAGGCTCTGTGCGCATGTTCCGAGAAGAGCGAGAGATCTGTGCCAACATTTATT ctgaaacttcttcaaaccatgacaggtaagctctttccttttatttccagACCCAGCTATCCTGAGCACTGCACGTGAGCTTAGCACGACATCACAACTTAAAAAGCTTCAGGAAACTATTGAGCAGAAAACTCAGATAGGGATTGGAGATATCATCAGAATCAGAGGCTCTGTATGCATGTTTAGAGAGGATCAAGAGATTTGTGCCAACATTTACTgtgagaatgaattgataccctccacatggtcatactcttagataagtcct Alignment from Pairagon ACCCAGCTATTCTGAGCACTGCGAGAGAGCTTAGCATGACATCACAGCTTAAGAAGCTGCAGGAGACCATCGAGCAGAAAACCAGGATAGGGATTGGAGATATCATCCGAGTCCGAGGCTCTGTGCGCATGTTCCGAGAAGAGCGAGAGATCTGTGCCAACATTTATT ctgaaacttcttcaaaccatgacaggtaagctctttccttttatttccagACCCAGCTATCCTGAGCACTGCACGTGAGCTTAGCACGACATCACAACTTAAAAAGCTTCAGGAAACTATTGAGCAGAAAACTCAGATAGGGATTGGAGATATCATCAGAATCAGAGGCTCTGTATGCATGTTTAGAGAGGATCAAGAGATTTGTGCCAACATTTACTgtgagaatgaattgataccctccacatggtcatactcttagataagtcct Alignment from Exonerate_protein2genome ACCCAGCTATTCTGAGCACTGCGAGAGAGCTTAGCATGACATCACAGCTTAAGAAGCTGCAGGAGACCATCGAGCAGAAAACCAGGATAGGGATTGGAGATATCATCCGAGTCCGAGGCTCTGTGCGCATGTTCCGAGAAGAGCGAGAGATCTGTGCCAACATTTATT ctgaaacttcttcaaaccatgacaggtaagctctttccttttatttccagACCCAGCTATCCTGAGCACTGCACGTGAGCTTAGCACGACATCACAACTTAAAAAGCTTCAGGAAACTATTGAGCAGAAAACTCAGATAGGGATTGGAGATATCATCAGAATCAGAGGCTCTGTATGCATGTTTAGAGAGGATCAAGAGATTTGTGCCAACATTTACTgtgagaatgaattgataccctccacatggtcatactcttagataagtcct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ACCCAGCTATTCTGAGCACTGCGAGAGAGCTTAGCATGACATCACAGCTTAAGAAGCTGCAGGAGACCATCGAGCAGAAAACCAGGATAGGGATTGGAGATATCATCCGAGTCCGAGGCTCTGTGCGCATGTTCCGAGAAGAGCGAGAGATCTGTGCCAACATTTATT ctgaaacttcttcaaaccatgacaggtaagctctttccttttatttccagACCCAGCTATCCTGAGCACTGCACGTGAGCTTAGCACGACATCACAACTTAAAAAGCTTCAGGAAACTATTGAGCAGAAAACTCAGATAGGGATTGGAGATATCATCAGAATCAGAGGCTCTGTATGCATGTTTAGAGAGGATCAAGAGATTTGTGCCAACATTTACTgtgagaatgaattgataccctccacatggtcatactcttagataagtcct #### Oosp3_ID3272_4 --> 1 - 2 Original Alignment aATTTCGCAAGATGAACTTGATAACAAGCAATCATCTGATGAGTGCGTTGGGGAAag cagattatcttttttgcttttgtaacctatccttccgttcttgtctctagaATCTCACATGATGAACTTGATAATAAGCAGCCATCTGATGGGTGTGTTGGGGAAaggtaactcttttacaggatgttgatttatggaggtgtaaattcttgtgggc Alignment from CESAR aATTTCGCAAGATGAACTTGATAACAAGCAATCATCTGATGAGTGCGTTGGGGAAag cagattatcttttttgcttttgtaacctatccttccgttcttgtctctagaATCTCACATGATGAACTTGATAATAAGCAGCCATCTGATGGGTGTGTTGGGGAAaggtaactcttttacaggatgttgatttatggaggtgtaaattcttgtgggc Alignment from Spaln_aa2Genome AATTTCGCAAGATGAACTTGATAACAAGCAATCATCTGATGAGTGCGTTGGGGAAAG cagattatcttttttgcttttgtaacctatccttccgttcttgtctctagAATCTCACATGATGAACTTGATAATAAGCAGCCATCTGATGGGTGTGTTGGGGAAAGgtaactcttttacaggatgttgatttatggaggtgtaaattcttgtgggc Alignment from Spaln_nt2Genome AATTTCGCAAGATGAACTTGATAACAAGCAATCATCTGATGAGTGCGTTGGGGAAAG cagattatcttttttgcttttgtaacctatccttccgttcttgtctctagAATCTCACATGATGAACTTGATAATAAGCAGCCATCTGATGGGTGTGTTGGGGAAAGgtaactcttttacaggatgttgatttatggaggtgtaaattcttgtgggc Alignment from Pairagon AATTTCGCAAGATGAACTTGATAACAAGCAATCATCTGATGAGTGCGTTGGGGAAAG cagattatcttttttgcttttgtaacctatccttccgttcttgtctctagAATCTCACATGATGAACTTGATAATAAGCAGCCATCTGATGGGTGTGTTGGGGAAAGgtaactcttttacaggatgttgatttatggaggtgtaaattcttgtgggc Alignment from Exonerate_protein2genome AATTTCGCAAGATGAACTTGATAACAAGCAATCATCTGATGAGTGCGTTGGGGAAAG cagattatcttttttgcttttgtaacctatccttccgttcttgtctctagAATCTCACATGATGAACTTGATAATAAGCAGCCATCTGATGGGTGTGTTGGGGAAAGgtaactcttttacaggatgttgatttatggaggtgtaaattcttgtgggc Alignment from Exonerate_coding2genome AATTTCGCAAGATGAACTTGATAACAAGCAATCATCTGATGAGTGCGTTGGGGAAAG cagattatcttttttgcttttgtaacctatccttccgttcttgtctctagAATCTCACATGATGAACTTGATAATAAGCAGCCATCTGATGGGTGTGTTGGGGAAAGgtaactcttttacaggatgttgatttatggaggtgtaaattcttgtgggc Alignment from GeneWise AATTTCGCAAGATGAACTTGATAACAAGCAATCATCTGATGAGTGCGTTGGGGAAAG cagattatcttttttgcttttgtaacctatccttccgttcttgtctctagAATCTCACATGATGAACTTGATAATAAGCAGCCATCTGATGGGTGTGTTGGGGAAAGgtaactcttttacaggatgttgatttatggaggtgtaaattcttgtgggc #### Osbp_ID3346_5 --> 2 - 2 Original Alignment atCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACaa gtgttttgagttaagaatcaaagaaatacaagctgtttccccttccccagatCAATGCTGTTCTGGAAAGGGGGACATGAGTAAGGAAGATGATGAAAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAACCTGAGCCACaagtaagacctttagccgagctatacaggcagagtatcttttcttaggtggt Alignment from CESAR atCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACaa gtgttttgagttaagaatcaaagaaatacaagctgtttccccttccccagatCAATGCTGTTCTGGAAAGGGGGACATGAGTAAGGAAGATGATGAAAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAACCTGAGCCACaagtaagacctttagccgagctatacaggcagagtatcttttcttaggtggt Alignment from Spaln_aa2Genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA gtgttttgagttaagaatcaaagaaatacaagctgtttccccttccccagATCAATGCTGTTCTGGAAAGGGGGACATGAGTAAGGAAGATGATGAAAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAACCTGAGCCACAAgtaagacctttagccgagctatacaggcagagtatcttttcttaggtggt Alignment from Spaln_nt2Genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA gtgttttgagttaagaatcaaagaaatacaagctgtttccccttccccagATCAATGCTGTTCTGGAAAGGGGGACATGAGTAAGGAAGATGATGAAAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAACCTGAGCCACAAgtaagacctttagccgagctatacaggcagagtatcttttcttaggtggt Alignment from Pairagon ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA gtgttttgagttaagaatcaaagaaatacaagctgtttccccttccccagATCAATGCTGTTCTGGAAAGGGGGACATGAGTAAGGAAGATGATGAAAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAACCTGAGCCACAAgtaagacctttagccgagctatacaggcagagtatcttttcttaggtggt Alignment from Exonerate_protein2genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA gtgttttgagttaagaatcaaagaaatacaagctgtttccccttccccagATCAATGCTGTTCTGGAAAGGGGGACATGAGTAAGGAAGATGATGAAAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAACCTGAGCCACAAgtaagacctttagccgagctatacaggcagagtatcttttcttaggtggt Alignment from Exonerate_coding2genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA gtgttttgagttaagaatcaaagaaatacaagctgtttccccttccccagATCAATGCTGTTCTGGAAAGGGGGACATGAGTAAGGAAGATGATGAAAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAACCTGAGCCACAAgtaagacctttagccgagctatacaggcagagtatcttttcttaggtggt Alignment from GeneWise ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA gtgttttgagttaagaatcaaagaaatacaagctgtttccccttccccagATCAATGCTGTTCTGGAAAGGGGGACATGAGTAAGGAAGATGATGAAAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAACCTGAGCCACAAgtaagacctttagccgagctatacaggcagagtatcttttcttaggtggt #### Osbp_ID3351_10 --> 2 - 0 Original Alignment gtACTATCCACTGCATTTTCCACTCAACTGGGCACCATTACACTTGGAAAAAAGTTACCACAACAGTACACAACATTATTGTGGGCAAGTTGTGGATAGATCAG gaagtaactggtacagactaaagtaaccccctccctttttttccatgaaggaACTATCCACTGTATTTTCCACTCAACAGGGCACCATTATGGTTGGAGGAAAGTCACCACGACAGTACACAATCTTATAGTAGGCAAATTGTGGATAGACCAGgtaaggtgattcatctaaaactcagagtttaaagagtacaaaggggcttt Alignment from CESAR gtACTATCCACTGCATTTTCCACTCAACTGGGCACCATTACACTTGGAAAAAAGTTACCACAACAGTACACAACATTATTGTGGGCAAGTTGTGGATAGATCAG gaagtaactggtacagactaaagtaaccccctccctttttttccatgaaggaACTATCCACTGTATTTTCCACTCAACAGGGCACCATTATGGTTGGAGGAAAGTCACCACGACAGTACACAATCTTATAGTAGGCAAATTGTGGATAGACCAGgtaaggtgattcatctaaaactcagagtttaaagagtacaaaggggcttt Alignment from Spaln_aa2Genome CTTGGTACTATCCACTGCATTTTCCACTCAACTGGGCACCATTACACTTGGAAAAAAGTTACCACAACAGTACACAACATTATTGTGGGCAAGTTGTGGATAGATCAG gtaactggtacagactaaagtaaccccctccctttttttccatgaa gGAACTATCCACTGTATTTTCCACTCAACAGGGCACCATTATGGTTGGAGGAAAGTCACCACGACAGTACACAATCTTATAGTAGGCAAATTGTGGATAGACCAGgtaaggtgattcatctaaaactcagagtttaaagagtacaaaggggcttt Alignment from Spaln_nt2Genome GTACTATCCACTGCATTTTCCACTCAACTGGGCACCATTACACTTGGAAAAAAGTTACCACAACAGTACACAACATTATTGTGGGCAAGTTGTGGATAGATCAG gaagtaactggtacagactaaagtaaccccctccctttttttccatgaagGAACTATCCACTGTATTTTCCACTCAACAGGGCACCATTATGGTTGGAGGAAAGTCACCACGACAGTACACAATCTTATAGTAGGCAAATTGTGGATAGACCAGgtaaggtgattcatctaaaactcagagtttaaagagtacaaaggggcttt Alignment from Pairagon GTACTATCCACTGCATTTTCCACTCAACTGGGCACCATTACACTTGGAAAAAAGTTACCACAACAGTACACAACATTATTGTGGGCAAGTTGTGGATAGATCAG gaagtaactggtacagactaaagtaaccccctccctttttttccatgaagGAACTATCCACTGTATTTTCCACTCAACAGGGCACCATTATGGTTGGAGGAAAGTCACCACGACAGTACACAATCTTATAGTAGGCAAATTGTGGATAGACCAGgtaaggtgattcatctaaaactcagagtttaaagagtacaaaggggcttt Alignment from Exonerate_protein2genome TTGGTACTATCCACTGCATTTTCCACTCAACTGGGCACCATTACACTTGGAAAAAAGTTACCACAACAGTACACAACATTATTGTGGGCAAGTTGTGGATAGATCAG gaagtaactggtacagactaaagtaaccccctccctttttttccatgAAGGAACTATCCACTGTATTTTCCACTCAACAGGGCACCATTATGGTTGGAGGAAAGTCACCACGACAGTACACAATCTTATAGTAGGCAAATTGTGGATAGACCAGgtaaggtgattcatctaaaactcagagtttaaagagtacaaaggggcttt Alignment from Exonerate_coding2genome TTGGTACTATCCACTGCATTTTCCACTCAACTGGGCACCATTACACTTGGAAAAAAGTTACCACAACAGTACACAACATTATTGTGGGCAAGTTGTGGATAGATCAG gaagtaactggtacagactaaagtaaccccctccctttttttccatgAAGGAACTATCCACTGTATTTTCCACTCAACAGGGCACCATTATGGTTGGAGGAAAGTCACCACGACAGTACACAATCTTATAGTAGGCAAATTGTGGATAGACCAGgtaaggtgattcatctaaaactcagagtttaaagagtacaaaggggcttt Alignment from GeneWise TTGGTACTATCCACTGCATTTTCCACTCAACTGGGCACCATTACACTTGGAAAAAAGTTACCACAACAGTACACAACATTATTGTGGGCAAGTTGTGGATAGATCAG gaagtaactggtacagactaaagtaaccccctccctttttttccatgaagGA---ACTATCCACTGTATTTTCCACTCAACAGGGCACCATTATGGTTGGAGGAAAGTCACCACGACAGTACACAATCTTATAGTAGGCAAATTGTGGATAGACCAGgtaaggtgattcatctaaaactcagagtttaaagagtacaaaggggcttt #### Ostf1_ID4421_9 --> 2 - 1 Original Alignment gtGCGAGGACAGACTTGAGAAACAATGAGAAGAAGCTGGCCTTGGACATGGCCACCAACGCTGCCTGTGCATCGCTCCTGAAGAAGAAGCAGCAGGGAACAg caagggactgtttgacacacatattaacgctcacctgggcctatcctcaggtGCAAGAACAGATTTGAGAAAC---AAGGAGAAACTAGCCTTGGACATGGCCACTAATGCTCCCTGTGCATCACTCTTGAAGAAGAAACAGCAAGAAACCggtatgtaccaactttatgaatattaaaacaagctagacctgatatgaagg Alignment from CESAR gtGCGAGGACAGACTTGAGAAACAATGAGAAGAAGCTGGCCTTGGACATGGCCACCAACGCTGCCTGTGCATCGCTCCTGAAGAAGAAGCAGCAGGGAACAg caagggactgtttgacacacatattaacgctcacctgggcctatcctcaggtGCAAGAACAGATTTGAGAAACAAGGAG---AAACTAGCCTTGGACATGGCCACTAATGCTCCCTGTGCATCACTCTTGAAGAAGAAACAGCAAGAAACCggtatgtaccaactttatgaatattaaaacaagctagacctgatatgaagg Alignment from Spaln_aa2Genome GTGCGAGGACAGACTTGAGAAACAATGAGAAGAAGCTGGCCTTGGACATGGCCACCAACGCTGCCTGTGCATCGCTCCTGAAGAAGAAGCAGCAGGGAACAG caagggactgtttgacacacatattaacgctcacctgggcctatcctcagGTGCAAGAACAGATTTGAGAAACAAGGAG---AAACTAGCCTTGGACATGGCCACTAATGCTCCCTGTGCATCACTCTTGAAGAAGAAACAGCAAGAAACCGgtatgtaccaactttatgaatattaaaacaagctagacctgatatgaagg Alignment from Spaln_nt2Genome GTGCGAGGACAGACTTGAGAAACAATGAGAAGAAGCTGGCCTTGGACATGGCCACCAACGCTGCCTGTGCATCGCTCCTGAAGAAGAAGCAGCAGGGAACAG caagggactgtttgacacacatattaacgctcacctgggcctatcctcagGTGCAAGAACAGATTTGAGAAACA---AGGAGAAACTAGCCTTGGACATGGCCACTAATGCTCCCTGTGCATCACTCTTGAAGAAGAAACAGCAAGAAACCGgtatgtaccaactttatgaatattaaaacaagctagacctgatatgaagg Alignment from Pairagon GTGCGAGGACAGACTTGAGAAACAATGAGAAGAAGCTGGCCTTGGACATGGCCACCAACGCTGCCTGTGCATCGCTCCTGAAGAAGAAGCAGCAGGGAACAG caagggactgtttgacacacatattaacgctcacctgggcctatcctcagGTGCAAGAACAGATTTGAGAAACA---AGGAGAAACTAGCCTTGGACATGGCCACTAATGCTCCCTGTGCATCACTCTTGAAGAAGAAACAGCAAGAAACCGgtatgtaccaactttatgaatattaaaacaagctagacctgatatgaagg Alignment from Exonerate_protein2genome GTGCGAGGACAGACTTGAGAAACAATGAGAAGAAGCTGGCCTTGGACATGGCCACCAACGCTGCCTGTGCATCGCTCCTGAAGAAGAAGCAGCAGGGAACAG caagggactgtttgacacacatattaacgctcacctgggcctatcctcagGTGCAAGAACAGATTTGAGAAACAAGGAG---AAACTAGCCTTGGACATGGCCACTAATGCTCCCTGTGCATCACTCTTGAAGAAGAAACAGCAAGAAACCGgtatgtaccaactttatgaatattaaaacaagctagacctgatatgaagg Alignment from Exonerate_coding2genome GTGCGAGGACAGACTTGAGAAACAATGAGAAGAAGCTGGCCTTGGACATGGCCACCAACGCTGCCTGTGCATCGCTCCTGAAGAAGAAGCAGCAGGGAACAG caagggactgtttgacacacatattaacgctcacctgggcctatcctcagGTGCAAGAACAGATTTGAGAAACAAGGAG---AAACTAGCCTTGGACATGGCCACTAATGCTCCCTGTGCATCACTCTTGAAGAAGAAACAGCAAGAAACCGgtatgtaccaactttatgaatattaaaacaagctagacctgatatgaagg Alignment from GeneWise GTGCGAGGACAGACTTGAGAAACAATGAGAAGAAGCTGGCCTTGGACATGGCCACCAACGCTGCCTGTGCATCGCTCCTGAAGAAGAAGCAGCAGGGAACAG caagggactgtttgacacacatattaacgctcacctgggcctatcctcagGTGCAAGAACAGATTTGAGAAACAAGGAGAAA---CTAGCCTTGGACATGGCCACTAATGCTCCCTGTGCATCACTCTTGAAGAAGAAACAGCAAGAAACCGgtatgtaccaactttatgaatattaaaacaagctagacctgatatgaagg #### Ostf1_ID4425_5 --> 2 - 1 Original Alignment tgGCTGAGCAGGCAGAATCCATTGACAATCCATTGCATGAAGCTGCAAAAAGAg aataccagacagcatggagctctgagaaccctcttggtccccaatttcagtgGCTAAGCAGGCAGAATCCATTGACAACCCATTGCATGATGCTGCGAAAAGAggtatgtttcatttgcctttctagtgacaacattctatgtaacaattccca Alignment from CESAR tgGCTGAGCAGGCAGAATCCATTGACAATCCATTGCATGAAGCTGCAAAAAGAg aataccagacagcatggagctctgagaaccctcttggtccccaatttcagtgGCTAAGCAGGCAGAATCCATTGACAACCCATTGCATGATGCTGCGAAAAGAggtatgtttcatttgcctttctagtgacaacattctatgtaacaattccca Alignment from Spaln_aa2Genome TGGCTGAGCAGGCAGAATCCATTGACAATCCATTGCATGAAGCTGCAAAAAGAG aataccagacagcatggagctctgagaaccctcttggtccccaatttcagTGGCTAAGCAGGCAGAATCCATTGACAACCCATTGCATGATGCTGCGAAAAGAGgtatgtttcatttgcctttctagtgacaacattctatgtaacaattccca Alignment from Spaln_nt2Genome TGGCTGAGCAGGCAGAATCCATTGACAATCCATTGCATGAAGCTGCAAAAAGAG aataccagacagcatggagctctgagaaccctcttggtccccaatttcagTGGCTAAGCAGGCAGAATCCATTGACAACCCATTGCATGATGCTGCGAAAAGAGgtatgtttcatttgcctttctagtgacaacattctatgtaacaattccca Alignment from Pairagon TGGCTGAGCAGGCAGAATCCATTGACAATCCATTGCATGAAGCTGCAAAAAGAG aataccagacagcatggagctctgagaaccctcttggtccccaatttcagTGGCTAAGCAGGCAGAATCCATTGACAACCCATTGCATGATGCTGCGAAAAGAGgtatgtttcatttgcctttctagtgacaacattctatgtaacaattccca Alignment from Exonerate_protein2genome TGGCTGAGCAGGCAGAATCCATTGACAATCCATTGCATGAAGCTGCAAAAAGAG aataccagacagcatggagctctgagaaccctcttggtccccaatttcagTGGCTAAGCAGGCAGAATCCATTGACAACCCATTGCATGATGCTGCGAAAAGAGgtatgtttcatttgcctttctagtgacaacattctatgtaacaattccca Alignment from Exonerate_coding2genome TGGCTGAGCAGGCAGAATCCATTGACAATCCATTGCATGAAGCTGCAAAAAGAG aataccagacagcatggagctctgagaaccctcttggtccccaatttcagTGGCTAAGCAGGCAGAATCCATTGACAACCCATTGCATGATGCTGCGAAAAGAGgtatgtttcatttgcctttctagtgacaacattctatgtaacaattccca Alignment from GeneWise TGGCTGAGCAGGCAGAATCCATTGACAATCCATTGCATGAAGCTGCAAAAAGAG aataccagacagcatggagctctgagaaccctcttggtccccaatttcagTGGCTAAGCAGGCAGAATCCATTGACAACCCATTGCATGATGCTGCGAAAAGAGgtatgtttcatttgcctttctagtgacaacattctatgtaacaattccca #### Ovol1_ID1086_2 --> 2 - 0 Original Alignment tcAGCCTCGGCTTCTGCCCACCACAGCCCTACCGGGAACCAGAGGCATCGGTGGCCGAGCCTCCTTCCTGCCCCCTGGCTTTGGACATGAGCCTTCGAGACTCCAGCTATAGCGTGGCTCCAGGGCCCTGCGTGGTGGCCCAGCTACCCTCTGAAGATGTGAGCCATCTGACAGATCCCCAGAGCAGAGACCAGGGCTTTCTACGAACCAAGATGAAG tttaaggatcactaaattgtctttcctatgtgaaacacggtgttttccagtcAGTCTGGGCTTCTGCCCCCCACAGCCATATCAGGAACCAGAAGCATCTGTAACAGAGCCTCCATCTTGTTCACTGGCCTTGGACATGAGTCTCCAAGAGTCCAGCTACAGTGTACCACCTGGGCCATGTGTTGTGGCTCAGTTGCCATCAGAGGATGTAGGCCACCTGACGGACCCTCAGAGCAGAGACTGGGGTTTCCTACAGACAAAGATGAAGgtaggtactgaccatctgttctgatactccaagacagctatgtttagcct Alignment from CESAR tcAGCCTCGGCTTCTGCCCACCACAGCCCTACCGGGAACCAGAGGCATCGGTGGCCGAGCCTCCTTCCTGCCCCCTGGCTTTGGACATGAGCCTTCGAGACTCCAGCTATAGCGTGGCTCCAGGGCCCTGCGTGGTGGCCCAGCTACCCTCTGAAGATGTGAGCCATCTGACAGATCCCCAGAGCAGAGACCAGGGCTTTCTACGAACCAAGATGAAG tttaaggatcactaaattgtctttcctatgtgaaacacggtgttttccagtcAGTCTGGGCTTCTGCCCCCCACAGCCATATCAGGAACCAGAAGCATCTGTAACAGAGCCTCCATCTTGTTCACTGGCCTTGGACATGAGTCTCCAAGAGTCCAGCTACAGTGTACCACCTGGGCCATGTGTTGTGGCTCAGTTGCCATCAGAGGATGTAGGCCACCTGACGGACCCTCAGAGCAGAGACTGGGGTTTCCTACAGACAAAGATGAAGgtaggtactgaccatctgttctgatactccaagacagctatgtttagcct Alignment from Spaln_aa2Genome TCAGCCTCGGCTTCTGCCCACCACAGCCCTACCGGGAACCAGAGGCATCGGTGGCCGAGCCTCCTTCCTGCCCCCTGGCTTTGGACATGAGCCTTCGAGACTCCAGCTATAGCGTGGCTCCAGGGCCCTGCGTGGTGGCCCAGCTACCCTCTGAAGATGTGAGCCATCTGACAGATCCCCAGAGCAGAGACCAGGGCTTTCTACGAACCAAGATGAAG tttaaggatcactaaattgtctttcctatgtgaaacacggtgttttccagTCAGTCTGGGCTTCTGCCCCCCACAGCCATATCAGGAACCAGAAGCATCTGTAACAGAGCCTCCATCTTGTTCACTGGCCTTGGACATGAGTCTCCAAGAGTCCAGCTACAGTGTACCACCTGGGCCATGTGTTGTGGCTCAGTTGCCATCAGAGGATGTAGGCCACCTGACGGACCCTCAGAGCAGAGACTGGGGTTTCCTACAGACAAAGATGAAGgtaggtactgaccatctgttctgatactccaagacagctatgtttagcct Alignment from Spaln_nt2Genome TCAGCCTCGGCTTCTGCCCACCACAGCCCTACCGGGAACCAGAGGCATCGGTGGCCGAGCCTCCTTCCTGCCCCCTGGCTTTGGACATGAGCCTTCGAGACTCCAGCTATAGCGTGGCTCCAGGGCCCTGCGTGGTGGCCCAGCTACCCTCTGAAGATGTGAGCCATCTGACAGATCCCCAGAGCAGAGACCAGGGCTTTCTACGAACCAAGATGAAG tttaaggatcactaaattgtctttcctatgtgaaacacggtgttttccagTCAGTCTGGGCTTCTGCCCCCCACAGCCATATCAGGAACCAGAAGCATCTGTAACAGAGCCTCCATCTTGTTCACTGGCCTTGGACATGAGTCTCCAAGAGTCCAGCTACAGTGTACCACCTGGGCCATGTGTTGTGGCTCAGTTGCCATCAGAGGATGTAGGCCACCTGACGGACCCTCAGAGCAGAGACTGGGGTTTCCTACAGACAAAGATGAAGgtaggtactgaccatctgttctgatactccaagacagctatgtttagcct Alignment from Pairagon TCAGCCTCGGCTTCTGCCCACCACAGCCCTACCGGGAACCAGAGGCATCGGTGGCCGAGCCTCCTTCCTGCCCCCTGGCTTTGGACATGAGCCTTCGAGACTCCAGCTATAGCGTGGCTCCAGGGCCCTGCGTGGTGGCCCAGCTACCCTCTGAAGATGTGAGCCATCTGACAGATCCCCAGAGCAGAGACCAGGGCTTTCTACGAACCAAGATGAAG tttaaggatcactaaattgtctttcctatgtgaaacacggtgttttccagTCAGTCTGGGCTTCTGCCCCCCACAGCCATATCAGGAACCAGAAGCATCTGTAACAGAGCCTCCATCTTGTTCACTGGCCTTGGACATGAGTCTCCAAGAGTCCAGCTACAGTGTACCACCTGGGCCATGTGTTGTGGCTCAGTTGCCATCAGAGGATGTAGGCCACCTGACGGACCCTCAGAGCAGAGACTGGGGTTTCCTACAGACAAAGATGAAGgtaggtactgaccatctgttctgatactccaagacagctatgtttagcct Alignment from Exonerate_protein2genome TCAGCCTCGGCTTCTGCCCACCACAGCCCTACCGGGAACCAGAGGCATCGGTGGCCGAGCCTCCTTCCTGCCCCCTGGCTTTGGACATGAGCCTTCGAGACTCCAGCTATAGCGTGGCTCCAGGGCCCTGCGTGGTGGCCCAGCTACCCTCTGAAGATGTGAGCCATCTGACAGATCCCCAGAGCAGAGACCAGGGCTTTCTACGAACCAAGATGAAG tttaaggatcactaaattgtctttcctatgtgaaacacggtgttttccagTCAGTCTGGGCTTCTGCCCCCCACAGCCATATCAGGAACCAGAAGCATCTGTAACAGAGCCTCCATCTTGTTCACTGGCCTTGGACATGAGTCTCCAAGAGTCCAGCTACAGTGTACCACCTGGGCCATGTGTTGTGGCTCAGTTGCCATCAGAGGATGTAGGCCACCTGACGGACCCTCAGAGCAGAGACTGGGGTTTCCTACAGACAAAGATGAAGgtaggtactgaccatctgttctgatactccaagacagctatgtttagcct Alignment from Exonerate_coding2genome TCAGCCTCGGCTTCTGCCCACCACAGCCCTACCGGGAACCAGAGGCATCGGTGGCCGAGCCTCCTTCCTGCCCCCTGGCTTTGGACATGAGCCTTCGAGACTCCAGCTATAGCGTGGCTCCAGGGCCCTGCGTGGTGGCCCAGCTACCCTCTGAAGATGTGAGCCATCTGACAGATCCCCAGAGCAGAGACCAGGGCTTTCTACGAACCAAGATGAAG tttaaggatcactaaattgtctttcctatgtgaaacacggtgttttccagTCAGTCTGGGCTTCTGCCCCCCACAGCCATATCAGGAACCAGAAGCATCTGTAACAGAGCCTCCATCTTGTTCACTGGCCTTGGACATGAGTCTCCAAGAGTCCAGCTACAGTGTACCACCTGGGCCATGTGTTGTGGCTCAGTTGCCATCAGAGGATGTAGGCCACCTGACGGACCCTCAGAGCAGAGACTGGGGTTTCCTACAGACAAAGATGAAGgtaggtactgaccatctgttctgatactccaagacagctatgtttagcct Alignment from GeneWise TCAGCCTCGGCTTCTGCCCACCACAGCCCTACCGGGAACCAGAGGCATCGGTGGCCGAGCCTCCTTCCTGCCCCCTGGCTTTGGACATGAGCCTTCGAGACTCCAGCTATAGCGTGGCTCCAGGGCCCTGCGTGGTGGCCCAGCTACCCTCTGAAGATGTGAGCCATCTGACAGATCCCCAGAGCAGAGACCAGGGCTTTCTACGAACCAAGATGAAG tttaaggatcactaaattgtctttcctatgtgaaacacggtgttttccagTCAGTCTGGGCTTCTGCCCCCCACAGCCATATCAGGAACCAGAAGCATCTGTAACAGAGCCTCCATCTTGTTCACTGGCCTTGGACATGAGTCTCCAAGAGTCCAGCTACAGTGTACCACCTGGGCCATGTGTTGTGGCTCAGTTGCCATCAGAGGATGTAGGCCACCTGACGGACCCTCAGAGCAGAGACTGGGGTTTCCTACAGACAAAGATGAAGgtaggtactgaccatctgttctgatactccaagacagctatgtttagcct #### Pacs1_ID871_22 --> 1 - 1 Original Alignment gAGCCCAAATAGCCCATATGGGGATGTG---ATTGGTCTCCAGGTGGACTACTGGCTGGGCCACCCTGGGGAGCGAAGGAGAGAAGGTGATAAGAGGGATGCCAGCTCAAAGAACACCCTCAAGAGTGTCTTCCGCTCGGTGCAGGTTTCTCGCCTGCCACATGCAGGGGAAGCCCAGCTTTCTGGCACCATGGCAATGACTGTGGTCACCAAAGAGAAGAACAAGAAAg taactttttacgttgaatccatcacttttgagtcgctctgcctcccacagcACCCCTAATAGCCCATATGGAGATGGCATGAACAGCCTTCAGGTTGACTATTGGTTGGGTCATCCAGGAGAGCGGAAGAGAGATGGTGACAAGAGGGATGCTACTTCAAAGAACATTTTTGAAAGCCTCTTCCACTCGGTGCAGGTCTCCTGCCTGCCACATTCGGGAGTGGCACAGCTCTCTGGGACCATGACAATGACAGTCGTCACAAAGGAGAAGAACAAGAAAggtacctaaggatcacacctactgctagttgcccacgttgtaccattgagt Alignment from CESAR gAGCCCAAATAGCCCATATGGGGAT---GTGATTGGTCTCCAGGTGGACTACTGGCTGGGCCACCCTGGGGAGCGAAGGAGAGAAGGTGATAAGAGGGATGCCAGCTCAAAGAACACCCTCAAGAGTGTCTTCCGCTCGGTGCAGGTTTCTCGCCTGCCACATGCAGGGGAAGCCCAGCTTTCTGGCACCATGGCAATGACTGTGGTCACCAAAGAGAAGAACAAGAAAg taactttttacgttgaatccatcacttttgagtcgctctgcctcccacagcACCCCTAATAGCCCATATGGAGATGGCATGAACAGCCTTCAGGTTGACTATTGGTTGGGTCATCCAGGAGAGCGGAAGAGAGATGGTGACAAGAGGGATGCTACTTCAAAGAACATTTTTGAAAGCCTCTTCCACTCGGTGCAGGTCTCCTGCCTGCCACATTCGGGAGTGGCACAGCTCTCTGGGACCATGACAATGACAGTCGTCACAAAGGAGAAGAACAAGAAAggtacctaaggatcacacctactgctagttgcccacgttgtaccattgagt Alignment from Spaln_aa2Genome GAGCCCAAATAGCCCATATGGGGATGTGATT---GGTCTCCAGGTGGACTACTGGCTGGGCCACCCTGGGGAGCGAAGGAGAGAAGGTGATAAGAGGGATGCCAGCTCAAAGAACACCCTCAAGAGTGTCTTCCGCTCGGTGCAGGTTTCTCGCCTGCCACATGCAGGGGAAGCCCAGCTTTCTGGCACCATGGCAATGACTGTGGTCACCAAAGAGAAGAACAAGAAAG taactttttacgttgaatccatcacttttgagtcgctctgcctcccacagCACCCCTAATAGCCCATATGGAGATGGCATGAACAGCCTTCAGGTTGACTATTGGTTGGGTCATCCAGGAGAGCGGAAGAGAGATGGTGACAAGAGGGATGCTACTTCAAAGAACATTTTTGAAAGCCTCTTCCACTCGGTGCAGGTCTCCTGCCTGCCACATTCGGGAGTGGCACAGCTCTCTGGGACCATGACAATGACAGTCGTCACAAAGGAGAAGAACAAGAAAGgtacctaaggatcacacctactgctagttgcccacgttgtaccattgagt Alignment from Spaln_nt2Genome GAGCCCAAATAGCCCATATGGGGATG---TGATTGGTCTCCAGGTGGACTACTGGCTGGGCCACCCTGGGGAGCGAAGGAGAGAAGGTGATAAGAGGGATGCCAGCTCAAAGAACACCCTCAAGAGTGTCTTCCGCTCGGTGCAGGTTTCTCGCCTGCCACATGCAGGGGAAGCCCAGCTTTCTGGCACCATGGCAATGACTGTGGTCACCAAAGAGAAGAACAAGAAAG taactttttacgttgaatccatcacttttgagtcgctctgcctcccacagCACCCCTAATAGCCCATATGGAGATGGCATGAACAGCCTTCAGGTTGACTATTGGTTGGGTCATCCAGGAGAGCGGAAGAGAGATGGTGACAAGAGGGATGCTACTTCAAAGAACATTTTTGAAAGCCTCTTCCACTCGGTGCAGGTCTCCTGCCTGCCACATTCGGGAGTGGCACAGCTCTCTGGGACCATGACAATGACAGTCGTCACAAAGGAGAAGAACAAGAAAGgtacctaaggatcacacctactgctagttgcccacgttgtaccattgagt Alignment from Pairagon GAGCCCAAATAGCCCATATGGGGATG---TGATTGGTCTCCAGGTGGACTACTGGCTGGGCCACCCTGGGGAGCGAAGGAGAGAAGGTGATAAGAGGGATGCCAGCTCAAAGAACACCCTCAAGAGTGTCTTCCGCTCGGTGCAGGTTTCTCGCCTGCCACATGCAGGGGAAGCCCAGCTTTCTGGCACCATGGCAATGACTGTGGTCACCAAAGAGAAGAACAAGAAAG taactttttacgttgaatccatcacttttgagtcgctctgcctcccacagCACCCCTAATAGCCCATATGGAGATGGCATGAACAGCCTTCAGGTTGACTATTGGTTGGGTCATCCAGGAGAGCGGAAGAGAGATGGTGACAAGAGGGATGCTACTTCAAAGAACATTTTTGAAAGCCTCTTCCACTCGGTGCAGGTCTCCTGCCTGCCACATTCGGGAGTGGCACAGCTCTCTGGGACCATGACAATGACAGTCGTCACAAAGGAGAAGAACAAGAAAGgtacctaaggatcacacctactgctagttgcccacgttgtaccattgagt Alignment from Exonerate_protein2genome GAGCCCAAATAGCCCATATGGGGAT---GTGATTGGTCTCCAGGTGGACTACTGGCTGGGCCACCCTGGGGAGCGAAGGAGAGAAGGTGATAAGAGGGATGCCAGCTCAAAGAACACCCTCAAGAGTGTCTTCCGCTCGGTGCAGGTTTCTCGCCTGCCACATGCAGGGGAAGCCCAGCTTTCTGGCACCATGGCAATGACTGTGGTCACCAAAGAGAAGAACAAGAAAG taactttttacgttgaatccatcacttttgagtcgctctgcctcccacagCACCCCTAATAGCCCATATGGAGATGGCATGAACAGCCTTCAGGTTGACTATTGGTTGGGTCATCCAGGAGAGCGGAAGAGAGATGGTGACAAGAGGGATGCTACTTCAAAGAACATTTTTGAAAGCCTCTTCCACTCGGTGCAGGTCTCCTGCCTGCCACATTCGGGAGTGGCACAGCTCTCTGGGACCATGACAATGACAGTCGTCACAAAGGAGAAGAACAAGAAAGgtacctaaggatcacacctactgctagttgcccacgttgtaccattgagt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAGCCCAAATAGCCCATATGGGGATGTGATTGGT---CTCCAGGTGGACTACTGGCTGGGCCACCCTGGGGAGCGAAGGAGAGAAGGTGATAAGAGGGATGCCAGCTCAAAGAACACCCTCAAGAGTGTCTTCCGCTCGGTGCAGGTTTCTCGCCTGCCACATGCAGGGGAAGCCCAGCTTTCTGGCACCATGGCAATGACTGTGGTCACCAAAGAGAAGAACAAGAAAG taactttttacgttgaatccatcacttttgagtcgctctgcctcccacagCACCCCTAATAGCCCATATGGAGATGGCATGAACAGCCTTCAGGTTGACTATTGGTTGGGTCATCCAGGAGAGCGGAAGAGAGATGGTGACAAGAGGGATGCTACTTCAAAGAACATTTTTGAAAGCCTCTTCCACTCGGTGCAGGTCTCCTGCCTGCCACATTCGGGAGTGGCACAGCTCTCTGGGACCATGACAATGACAGTCGTCACAAAGGAGAAGAACAAGAAAGgtacctaaggatcacacctactgctagttgcccacgttgtaccattgagt #### Pacs1_ID879_15 --> 0 - 2 Original Alignment TACGTGGCTGAATTGCTTCAAGACCAGAGGAAGCCTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAGGCAGTGCTGTCCGCCCTTCTCACTAGGATTCAGCGCta gtctggattttagctagctattcaagatactcttcttgcttctccggcagTATGTGGCCAAACTGCTTCAGGATCAACGGAAGCCTGTGGTGTGTGCATGCTCGCCAGTAGAGGTCCAGGCTGTTGTCTCAGCTCTTCTCACAAGGATTCAGCGAtagtaaggggctgtgtccacataggtaatgtgcactccagcaccctgtgact Alignment from CESAR TACGTGGCTGAATTGCTTCAAGACCAGAGGAAGCCTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAGGCAGTGCTGTCCGCCCTTCTCACTAGGATTCAGCGCta gtctggattttagctagctattcaagatactcttcttgcttctccggcagTATGTGGCCAAACTGCTTCAGGATCAACGGAAGCCTGTGGTGTGTGCATGCTCGCCAGTAGAGGTCCAGGCTGTTGTCTCAGCTCTTCTCACAAGGATTCAGCGAtagtaaggggctgtgtccacataggtaatgtgcactccagcaccctgtgact Alignment from Spaln_aa2Genome TACGTGGCTGAATTGCTTCAAGACCAGAGGAAGCCTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAGGCAGTGCTGTCCGCCCTTCTCACTAGGATTCAGCGCTA gtctggattttagctagctattcaagatactcttcttgcttctccggcagTATGTGGCCAAACTGCTTCAGGATCAACGGAAGCCTGTGGTGTGTGCATGCTCGCCAGTAGAGGTCCAGGCTGTTGTCTCAGCTCTTCTCACAAGGATTCAGCGATAgtaaggggctgtgtccacataggtaatgtgcactccagcaccctgtgact Alignment from Spaln_nt2Genome TACGTGGCTGAATTGCTTCAAGACCAGAGGAAGCCTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAGGCAGTGCTGTCCGCCCTTCTCACTAGGATTCAGCGCTA gtctggattttagctagctattcaagatactcttcttgcttctccggcagTATGTGGCCAAACTGCTTCAGGATCAACGGAAGCCTGTGGTGTGTGCATGCTCGCCAGTAGAGGTCCAGGCTGTTGTCTCAGCTCTTCTCACAAGGATTCAGCGATAgtaaggggctgtgtccacataggtaatgtgcactccagcaccctgtgact Alignment from Pairagon TACGTGGCTGAATTGCTTCAAGACCAGAGGAAGCCTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAGGCAGTGCTGTCCGCCCTTCTCACTAGGATTCAGCGCTA gtctggattttagctagctattcaagatactcttcttgcttctccggcagTATGTGGCCAAACTGCTTCAGGATCAACGGAAGCCTGTGGTGTGTGCATGCTCGCCAGTAGAGGTCCAGGCTGTTGTCTCAGCTCTTCTCACAAGGATTCAGCGATAgtaaggggctgtgtccacataggtaatgtgcactccagcaccctgtgact Alignment from Exonerate_protein2genome TACGTGGCTGAATTGCTTCAAGACCAGAGGAAGCCTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAGGCAGTGCTGTCCGCCCTTCTCACTAGGATTCAGCGCTA gtctggattttagctagctattcaagatactcttcttgcttctccggcagTATGTGGCCAAACTGCTTCAGGATCAACGGAAGCCTGTGGTGTGTGCATGCTCGCCAGTAGAGGTCCAGGCTGTTGTCTCAGCTCTTCTCACAAGGATTCAGCGATAgtaaggggctgtgtccacataggtaatgtgcactccagcaccctgtgact Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TACGTGGCTGAATTGCTTCAAGACCAGAGGAAGCCTGTGGTATGCACCTGCTCAACAGTGGAGGTCCAGGCAGTGCTGTCCGCCCTTCTCACTAGGATTCAGCGCTA gtctggattttagctagctattcaagatactcttcttgcttctccggcagTATGTGGCCAAACTGCTTCAGGATCAACGGAAGCCTGTGGTGTGTGCATGCTCGCCAGTAGAGGTCCAGGCTGTTGTCTCAGCTCTTCTCACAAGGATTCAGCGATAgtaaggggctgtgtccacataggtaatgtgcactccagcaccctgtgact #### Pacs1_ID880_14 --> 0 - 0 Original Alignment ATTCCAAGGAAGGTGGTATACGACCAACTGAATCAGATCCTGGTATCGGATGCAGCCCTCCCTGAAAATGTCATCCTGGTGAACACCACAGACTGGCAGGGCCAG gcttattcctgcagctttcaaggactctatcattgaaatattttttccagATCCCAGGGAAGGTGGTATACGAA---CTGAACCAGATATTGGTAACAGAAGCAGCTCTCCCTGAAAATATCATCCTGGTGAACAGCACAGACTGGGAGGGGCAAgtgagttagtaaggttcaagcgttgactctgggtttattaggggctggct Alignment from CESAR ATTCCAAGGAAGGTGGTATACGACCAACTGAATCAGATCCTGGTATCGGATGCAGCCCTCCCTGAAAATGTCATCCTGGTGAACACCACAGACTGGCAGGGCCAG gcttattcctgcagctttcaaggactctatcattgaaatattttttccagATCCCAGGGAAGGTGGTATACGAA---CTGAACCAGATATTGGTAACAGAAGCAGCTCTCCCTGAAAATATCATCCTGGTGAACAGCACAGACTGGGAGGGGCAAgtgagttagtaaggttcaagcgttgactctgggtttattaggggctggct Alignment from Spaln_aa2Genome ATTCCAAGGAAGGTGGTATACGACCAACTGAATCAGATCCTGGTATCGGATGCAGCCCTCCCTGAAAATGTCATCCTGGTGAACACCACAGACTGGCAGGGCCAG gcttattcctgcagctttcaaggactctatcattgaaatattttttccagATCCCAGGGAAGGTGGTATACGAA---CTGAACCAGATATTGGTAACAGAAGCAGCTCTCCCTGAAAATATCATCCTGGTGAACAGCACAGACTGGGAGGGGCAAgtgagttagtaaggttcaagcgttgactctgggtttattaggggctggct Alignment from Spaln_nt2Genome ATTCCAAGGAAGGTGGTATACGACCAACTGAATCAGATCCTGGTATCGGATGCAGCCCTCCCTGAAAATGTCATCCTGGTGAACACCACAGACTGGCAGGGCCAG gcttattcctgcagctttcaaggactctatcattgaaatattttttccagATCCCAGGGAAGGTGGTATACG---AACTGAACCAGATATTGGTAACAGAAGCAGCTCTCCCTGAAAATATCATCCTGGTGAACAGCACAGACTGGGAGGGGCAAgtgagttagtaaggttcaagcgttgactctgggtttattaggggctggct Alignment from Pairagon ATTCCAAGGAAGGTGGTATACGACCAACTGAATCAGATCCTGGTATCGGATGCAGCCCTCCCTGAAAATGTCATCCTGGTGAACACCACAGACTGGCAGGGCCAG gcttattcctgcagctttcaaggactctatcattgaaatattttttccagATCCCAGGGAAGGTGGTATACG---AACTGAACCAGATATTGGTAACAGAAGCAGCTCTCCCTGAAAATATCATCCTGGTGAACAGCACAGACTGGGAGGGGCAAgtgagttagtaaggttcaagcgttgactctgggtttattaggggctggct Alignment from Exonerate_protein2genome ATTCCAAGGAAGGTGGTATACGACCAACTGAATCAGATCCTGGTATCGGATGCAGCCCTCCCTGAAAATGTCATCCTGGTGAACACCACAGACTGGCAGGGCCAG gcttattcctgcagctttcaaggactctatcattgaaatattttttccagATCCCAGGGAAGGTGGTATAC---GAACTGAACCAGATATTGGTAACAGAAGCAGCTCTCCCTGAAAATATCATCCTGGTGAACAGCACAGACTGGGAGGGGCAAgtgagttagtaaggttcaagcgttgactctgggtttattaggggctggct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATTCCAAGGAAGGTGGTATACGACCAACTGAATCAGATCCTGGTATCGGATGCAGCCCTCCCTGAAAATGTCATCCTGGTGAACACCACAGACTGGCAGGGCCAG gcttattcctgcagctttcaaggactctatcattgaaatattttttccagATCCCAGGGAAGGTGGTATAC---GAACTGAACCAGATATTGGTAACAGAAGCAGCTCTCCCTGAAAATATCATCCTGGTGAACAGCACAGACTGGGAGGGGCAAgtgagttagtaaggttcaagcgttgactctgggtttattaggggctggct #### Pacs1_ID884_10 --> 1 - 0 Original Alignment gCCCTTCTTTGAGGGGATGTCTCAGTCCAGCTCACAGACGGAGATTGGCAGTCTCAACAGCAAGGGCAGCCTCGGGAAAGACACCACCAGTCCT ggacaatctgcagtcactcttgactgtcctgagccccatctctcctgcaggCCCTTCTTCGAGGGCATGTCACAGTCCAGTTCGCAGACAGAGATTGGGAGTCTCAACACCAAAGGCAGCCTTGGGAAGGACACAACTAGTCCTgtgaggtgaatgaaagtagaaatattaggaaaggaacttccagtgcagaa Alignment from CESAR gCCCTTCTTTGAGGGGATGTCTCAGTCCAGCTCACAGACGGAGATTGGCAGTCTCAACAGCAAGGGCAGCCTCGGGAAAGACACCACCAGTCCT ggacaatctgcagtcactcttgactgtcctgagccccatctctcctgcaggCCCTTCTTCGAGGGCATGTCACAGTCCAGTTCGCAGACAGAGATTGGGAGTCTCAACACCAAAGGCAGCCTTGGGAAGGACACAACTAGTCCTgtgaggtgaatgaaagtagaaatattaggaaaggaacttccagtgcagaa Alignment from Spaln_aa2Genome GCCCTTCTTTGAGGGGATGTCTCAGTCCAGCTCACAGACGGAGATTGGCAGTCTCAACAGCAAGGGCAGCCTCGGGAAAGACACCACCAGTCCT ggacaatctgcagtcactcttgactgtcctgagccccatctctcctgcagGCCCTTCTTCGAGGGCATGTCACAGTCCAGTTCGCAGACAGAGATTGGGAGTCTCAACACCAAAGGCAGCCTTGGGAAGGACACAACTAGTCCTgtgaggtgaatgaaagtagaaatattaggaaaggaacttccagtgcagaa Alignment from Spaln_nt2Genome GCCCTTCTTTGAGGGGATGTCTCAGTCCAGCTCACAGACGGAGATTGGCAGTCTCAACAGCAAGGGCAGCCTCGGGAAAGACACCACCAGTCCT ggacaatctgcagtcactcttgactgtcctgagccccatctctcctgcagGCCCTTCTTCGAGGGCATGTCACAGTCCAGTTCGCAGACAGAGATTGGGAGTCTCAACACCAAAGGCAGCCTTGGGAAGGACACAACTAGTCCTgtgaggtgaatgaaagtagaaatattaggaaaggaacttccagtgcagaa Alignment from Pairagon GCCCTTCTTTGAGGGGATGTCTCAGTCCAGCTCACAGACGGAGATTGGCAGTCTCAACAGCAAGGGCAGCCTCGGGAAAGACACCACCAGTCCT ggacaatctgcagtcactcttgactgtcctgagccccatctctcctgcagGCCCTTCTTCGAGGGCATGTCACAGTCCAGTTCGCAGACAGAGATTGGGAGTCTCAACACCAAAGGCAGCCTTGGGAAGGACACAACTAGTCCTgtgaggtgaatgaaagtagaaatattaggaaaggaacttccagtgcagaa Alignment from Exonerate_protein2genome GCCCTTCTTTGAGGGGATGTCTCAGTCCAGCTCACAGACGGAGATTGGCAGTCTCAACAGCAAGGGCAGCCTCGGGAAAGACACCACCAGTCCT ggacaatctgcagtcactcttgactgtcctgagccccatctctcctgcagGCCCTTCTTCGAGGGCATGTCACAGTCCAGTTCGCAGACAGAGATTGGGAGTCTCAACACCAAAGGCAGCCTTGGGAAGGACACAACTAGTCCTgtgaggtgaatgaaagtagaaatattaggaaaggaacttccagtgcagaa Alignment from Exonerate_coding2genome GCCCTTCTTTGAGGGGATGTCTCAGTCCAGCTCACAGACGGAGATTGGCAGTCTCAACAGCAAGGGCAGCCTCGGGAAAGACACCACCAGTCCT ggacaatctgcagtcactcttgactgtcctgagccccatctctcctgcagGCCCTTCTTCGAGGGCATGTCACAGTCCAGTTCGCAGACAGAGATTGGGAGTCTCAACACCAAAGGCAGCCTTGGGAAGGACACAACTAGTCCTgtgaggtgaatgaaagtagaaatattaggaaaggaacttccagtgcagaa Alignment from GeneWise GCCCTTCTTTGAGGGGATGTCTCAGTCCAGCTCACAGACGGAGATTGGCAGTCTCAACAGCAAGGGCAGCCTCGGGAAAGACACCACCAGTCCT ggacaatctgcagtcactcttgactgtcctgagccccatctctcctgcagGCCCTTCTTCGAGGGCATGTCACAGTCCAGTTCGCAGACAGAGATTGGGAGTCTCAACACCAAAGGCAGCCTTGGGAAGGACACAACTAGTCCTgtgaggtgaatgaaagtagaaatattaggaaaggaacttccagtgcagaa #### Pacs1_ID887_7 --> 0 - 0 Original Alignment GACCTATTCTATGAA---GATGAAGATCTTCGGAAAGTAAAGAAGACTCGGAGGAAACTGACCTCAACCTCAGCCATCACTAGG aggcaccatgaccctccgtagatgcatgtcctttggttttattcttgaagGACCTGTTCTATAAGGAGGATGAGGACCTTCCAGAGGTAAAGAAGACTCATAGAAAACTAACTTCAACTTCAGCAATTACTCAGgtaagagccccataccatactcaggtgctgaccagcatctccagcatata Alignment from CESAR GACCTATTCTAT---GAAGATGAAGATCTTCGGAAAGTAAAGAAGACTCGGAGGAAACTGACCTCAACCTCAGCCATCACTAGG aggcaccatgaccctccgtagatgcatgtcctttggttttattcttgaagGACCTGTTCTATAAGGAGGATGAGGACCTTCCAGAGGTAAAGAAGACTCATAGAAAACTAACTTCAACTTCAGCAATTACTCAGgtaagagccccataccatactcaggtgctgaccagcatctccagcatata Alignment from Spaln_aa2Genome GACCTATTCTAT---GAAGATGAAGATCTTCGGAAAGTAAAGAAGACTCGGAGGAAACTGACCTCAACCTCAGCCATCACTAGG aggcaccatgaccctccgtagatgcatgtcctttggttttattcttgaagGACCTGTTCTATAAGGAGGATGAGGACCTTCCAGAGGTAAAGAAGACTCATAGAAAACTAACTTCAACTTCAGCAATTACTCAGgtaagagccccataccatactcaggtgctgaccagcatctccagcatata Alignment from Spaln_nt2Genome GACCTATTCTAT---GAAGATGAAGATCTTCGGAAAGTAAAGAAGACTCGGAGGAAACTGACCTCAACCTCAGCCATCACTAGG aggcaccatgaccctccgtagatgcatgtcctttggttttattcttgaagGACCTGTTCTATAAGGAGGATGAGGACCTTCCAGAGGTAAAGAAGACTCATAGAAAACTAACTTCAACTTCAGCAATTACTCAGgtaagagccccataccatactcaggtgctgaccagcatctccagcatata Alignment from Pairagon GACCTATTCTAT---GAAGATGAAGATCTTCGGAAAGTAAAGAAGACTCGGAGGAAACTGACCTCAACCTCAGCCATCACTAGG aggcaccatgaccctccgtagatgcatgtcctttggttttattcttgaagGACCTGTTCTATAAGGAGGATGAGGACCTTCCAGAGGTAAAGAAGACTCATAGAAAACTAACTTCAACTTCAGCAATTACTCAGgtaagagccccataccatactcaggtgctgaccagcatctccagcatata Alignment from Exonerate_protein2genome GACCTATTCTAT---GAAGATGAAGATCTTCGGAAAGTAAAGAAGACTCGGAGGAAACTGACCTCAACCTCAGCCATCACTAGG aggcaccatgaccctccgtagatgcatgtcctttggttttattcttgaagGACCTGTTCTATAAGGAGGATGAGGACCTTCCAGAGGTAAAGAAGACTCATAGAAAACTAACTTCAACTTCAGCAATTACTCAGgtaagagccccataccatactcaggtgctgaccagcatctccagcatata Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GACCTATTCTAT---GAAGATGAAGATCTTCGGAAAGTAAAGAAGACTCGGAGGAAACTGACCTCAACCTCAGCCATCACTAGG aggcaccatgaccctccgtagatgcatgtcctttggttttattcttgaagGACCTGTTCTATAAGGAGGATGAGGACCTTCCAGAGGTAAAGAAGACTCATAGAAAACTAACTTCAACTTCAGCAATTACTCAGgtaagagccccataccatactcaggtgctgaccagcatctccagcatata #### Pank1_ID6984_5 --> 1 - 0 Original Alignment cTTTGGCAACATGATGAGCAAAGAAAAGAGAGAGTCCATCAGCAAAGAAGACCTCGCCCGGGCCACATTGGTCACCATCACCAACAACATTGGCTCCATTGCTCGGATG------TGTGCACTGAATGAG gggatagcctggtggtaactataagacattaattttttgtttccctacagtCTTTGCAACATGATGAGCAATGAA---------------TCCAAGGAAGATCTTGCCCAGGTTACATTGGTTACCAGCACCAACAATACAGGCACCATTACTCGGATGTGTGCCCAGGCACTAAATGAGgtgagtccttagacctttctaaacactcagcactgagaacatatactcta Alignment from CESAR cTTTGGCAACATGATGAGCAAAGAAAAGAGAGAGTCCATCAGCAAAGAAGACCTCGCCCGGGCCACATTGGTCACCATCACCAACAACATTGGCTCCATTGCTCGGATGTGT------GCACTGAATGAG gggatagcctggtggtaactataagacattaattttttgtttccctacagtCTTTGCAACATGATGAGCAATGAA---------------TCCAAGGAAGATCTTGCCCAGGTTACATTGGTTACCAGCACCAACAATACAGGCACCATTACTCGGATGTGTGCCCAGGCACTAAATGAGgtgagtccttagacctttctaaacactcagcactgagaacatatactcta Alignment from Spaln_aa2Genome CTTTGGCAACATGATGAGCAAAGAAAAGAGAGAGTCCATCAGCAAAGAAGACCTCGCCCGGGCCACATTGGTCACCATCACCAACAACATTGGCTCCATTGCTCGGATGTGT------GCACTGAATGAG gggatagcctggtggtaactataagacattaattttttgtttccctacagTCTTTGCAACATGATGAGCAATGAA---------------TCCAAGGAAGATCTTGCCCAGGTTACATTGGTTACCAGCACCAACAATACAGGCACCATTACTCGGATGTGTGCCCAGGCACTAAATGAGgtgagtccttagacctttctaaacactcagcactgagaacatatactcta Alignment from Spaln_nt2Genome CTTTGGCAACATGATGAGCAAAGAAAAGAGAGAGTCCATCAGCAAAGAAGACCTCGCCCGGGCCACATTGGTCACCATCACCAACAACATTGGCTCCATTGCTCGGATGTGTGC------ACTGAATGAG gggatagcctggtggtaactataagacattaattttttgtttccctacagTCTTTGCAACATGATGAGCAATGA-------------ATC--CAAGGAAGATCTTGCCCAGGTTACATTGGTTACCAGCACCAACAATACAGGCACCATTACTCGGATGTGTGCCCAGGCACTAAATGAGgtgagtccttagacctttctaaacactcagcactgagaacatatactcta Alignment from Pairagon CTTTGGCAACATGATGAGCAAAGAAAAGAGAGAGTCCATCAGCAAAGAAGACCTCGCCCGGGCCACATTGGTCACCATCACCAACAACATTGGCTCCATTGCTCGGATGTGT------GCACTGAATGAG gggatagcctggtggtaactataagacattaattttttgtttccctacagTCTTTGCAACATGATGAGCAATGAATC---------------CAAGGAAGATCTTGCCCAGGTTACATTGGTTACCAGCACCAACAATACAGGCACCATTACTCGGATGTGTGCCCAGGCACTAAATGAGgtgagtccttagacctttctaaacactcagcactgagaacatatactcta Alignment from Exonerate_protein2genome CTTTGGCAACATGATGAGCAAAGAAAAGAGAGAGTCCATCAGCAAAGAAGACCTCGCCCGGGCCACATTGGTCACCATCACCAACAACATTGGCTCCATTGCTCGGATGTGT------GCACTGAATGAG gggatagcctggtggtaactataagacattaattttttgtttccctacagTCTTTGCAACATGATGAGCAATGAA---------------TCCAAGGAAGATCTTGCCCAGGTTACATTGGTTACCAGCACCAACAATACAGGCACCATTACTCGGATGTGTGCCCAGGCACTAAATGAGgtgagtccttagacctttctaaacactcagcactgagaacatatactcta Alignment from Exonerate_coding2genome CTTTGGCAACATGATGAGCAAAGAAAAGAGAGAGTCCATCAGCAAAGAAGACCTCGCCCGGGCCACATTGGTCACCATCACCAACAACATTGGCTCCATTGCTCGGATGTGT------GCACTGAATGAG gggatagcctggtggtaactataagacattaattttttgtttccctacagTCTTTGCAACATGATGAGCAATGAA---------------TCCAAGGAAGATCTTGCCCAGGTTACATTGGTTACCAGCACCAACAATACAGGCACCATTACTCGGATGTGTGCCCAGGCACTAAATGAGgtgagtccttagacctttctaaacactcagcactgagaacatatactcta Alignment from GeneWise CTTTGGCAACATGATGAGCAAAGAAAAGAGAGAGTCCATCAGCAAAGAAGACCTCGCCCGGGCCACATTGGTCACCATCACCAACAACATTGGCTCCATTGCTCGGATGTGTGCA------CTGAATGAG gggatagcctggtggtaactataagacattaattttttgtttccctacagTCTTTGCAACATGATGAGCAATGAA---------------TCCAAGGAAGATCTTGCCCAGGTTACATTGGTTACCAGCACCAACAATACAGGCACCATTACTCGGATGTGTGCCCAGGCACTAAATGAGgtgagtccttagacctttctaaacactcagcactgagaacatatactcta #### Pank1_ID6986_4 --> 1 - 2 Original Alignment tCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGCGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAag atgggaacaagtccttggcttggtcacctcactgtgatttgcctgggcagtCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGTGATAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGGGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTGGCATCAaggtcagtatcatctgatttgaggcaagcaaacaaccacacatagaagatgc Alignment from CESAR tCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGCGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAag atgggaacaagtccttggcttggtcacctcactgtgatttgcctgggcagtCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGTGATAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGGGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTGGCATCAaggtcagtatcatctgatttgaggcaagcaaacaaccacacatagaagatgc Alignment from Spaln_aa2Genome TCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGCGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAG atgggaacaagtccttggcttggtcacctcactgtgatttgcctgggcagTCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGTGATAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGGGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTGGCATCAAGgtcagtatcatctgatttgaggcaagcaaacaaccacacatagaagatgc Alignment from Spaln_nt2Genome TCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGCGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAG atgggaacaagtccttggcttggtcacctcactgtgatttgcctgggcagTCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGTGATAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGGGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTGGCATCAAGgtcagtatcatctgatttgaggcaagcaaacaaccacacatagaagatgc Alignment from Pairagon TCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGCGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAG atgggaacaagtccttggcttggtcacctcactgtgatttgcctgggcagTCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGTGATAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGGGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTGGCATCAAGgtcagtatcatctgatttgaggcaagcaaacaaccacacatagaagatgc Alignment from Exonerate_protein2genome TCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGCGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAG atgggaacaagtccttggcttggtcacctcactgtgatttgcctgggcagTCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGTGATAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGGGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTGGCATCAAGgtcagtatcatctgatttgaggcaagcaaacaaccacacatagaagatgc Alignment from Exonerate_coding2genome TCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGCGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAG atgggaacaagtccttggcttggtcacctcactgtgatttgcctgggcagTCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGTGATAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGGGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTGGCATCAAGgtcagtatcatctgatttgaggcaagcaaacaaccacacatagaagatgc Alignment from GeneWise TCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGCGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAG atgggaacaagtccttggcttggtcacctcactgtgatttgcctgggcagTCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGTGATAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGGGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTGGCATCAAGgtcagtatcatctgatttgaggcaagcaaacaaccacacatagaagatgc #### Papss2_ID6716_10 --> 2 - 0 Original Alignment atGCCGTGTTTGCATTCCAGTTGCGCAATCCTGTCCACAATGGTCATGCCCTCCTGATGCAGGACACCCGCCGCAGGCTCCTGGAGAGGGGTTACAAGCACCCAGTCCTCCTGCTCCACCCTCTTGGGGGCTGGACCAAGGACGATGACGTACCTCTGGAATGGAGGATGAAACAGCATGCAGCTGTACTGGAGGAAAGGGTCCTGGATCCCAAGTCAACTATTGTTGCCATCTTTCCATCTCCTATGTTATATGCTGGTCCCACAGAG tgttactattaacggggagccttgacatacatctctatccgccagtacagatGCAGTATTTGCATTCCAGTTGCGCAACCCTGTTCACAATGGCCATGCTCTTCTCATGCAAGACACATGCCACAGGCTTTTGGAGCGTGGCTACAAACACCCAGTTCTCTTGCTTTACCCCTTTGGGGGT---TCAAAGGATGATGATGTCCCTCTGGAATGGAGGATGAAGCAGCATGCAACTGTATTGGAGGAGAGGGTCCTTGATCCGAAGTCAACCATTGTTGCAATCTTTCCATCTCCAATGTTATATGCTGGTTCCACAGAGgtgagtctaaggcttaccttgcacgacaggcccatctcaatctgttaaat Alignment from CESAR atGCCGTGTTTGCATTCCAGTTGCGCAATCCTGTCCACAATGGTCATGCCCTCCTGATGCAGGACACCCGCCGCAGGCTCCTGGAGAGGGGTTACAAGCACCCAGTCCTCCTGCTCCACCCTCTTGGGGGCTGGACCAAGGACGATGACGTACCTCTGGAATGGAGGATGAAACAGCATGCAGCTGTACTGGAGGAAAGGGTCCTGGATCCCAAGTCAACTATTGTTGCCATCTTTCCATCTCCTATGTTATATGCTGGTCCCACAGAG tgttactattaacggggagccttgacatacatctctatccgccagtacagatGCAGTATTTGCATTCCAGTTGCGCAACCCTGTTCACAATGGCCATGCTCTTCTCATGCAAGACACATGCCACAGGCTTTTGGAGCGTGGCTACAAACACCCAGTTCTCTTGCTTTACCCCTTTGGGGGT---TCAAAGGATGATGATGTCCCTCTGGAATGGAGGATGAAGCAGCATGCAACTGTATTGGAGGAGAGGGTCCTTGATCCGAAGTCAACCATTGTTGCAATCTTTCCATCTCCAATGTTATATGCTGGTTCCACAGAGgtgagtctaaggcttaccttgcacgacaggcccatctcaatctgttaaat Alignment from Spaln_aa2Genome ATGCCGTGTTTGCATTCCAGTTGCGCAATCCTGTCCACAATGGTCATGCCCTCCTGATGCAGGACACCCGCCGCAGGCTCCTGGAGAGGGGTTACAAGCACCCAGTCCTCCTGCTCCACCCTCTTGGGGGCTGGACCAAGGACGATGACGTACCTCTGGAATGGAGGATGAAACAGCATGCAGCTGTACTGGAGGAAAGGGTCCTGGATCCCAAGTCAACTATTGTTGCCATCTTTCCATCTCCTATGTTATATGCTGGTCCCACAGAG tgttactattaacggggagccttgacatacatctctatccgccagtacagATGCAGTATTTGCATTCCAGTTGCGCAACCCTGTTCACAATGGCCATGCTCTTCTCATGCAAGACACATGCCACAGGCTTTTGGAGCGTGGCTACAAACACCCAGTTCTCTTGCTTTACCCCTTTGGGGGT---TCAAAGGATGATGATGTCCCTCTGGAATGGAGGATGAAGCAGCATGCAACTGTATTGGAGGAGAGGGTCCTTGATCCGAAGTCAACCATTGTTGCAATCTTTCCATCTCCAATGTTATATGCTGGTTCCACAGAGgtgagtctaaggcttaccttgcacgacaggcccatctcaatctgttaaat Alignment from Spaln_nt2Genome ATGCCGTGTTTGCATTCCAGTTGCGCAATCCTGTCCACAATGGTCATGCCCTCCTGATGCAGGACACCCGCCGCAGGCTCCTGGAGAGGGGTTACAAGCACCCAGTCCTCCTGCTCCACCCTCTTGGGGGCTGGACCAAGGACGATGACGTACCTCTGGAATGGAGGATGAAACAGCATGCAGCTGTACTGGAGGAAAGGGTCCTGGATCCCAAGTCAACTATTGTTGCCATCTTTCCATCTCCTATGTTATATGCTGGTCCCACAGAG tgttactattaacggggagccttgacatacatctctatccgccagtacagATGCAGTATTTGCATTCCAGTTGCGCAACCCTGTTCACAATGGCCATGCTCTTCTCATGCAAGACACATGCCACAGGCTTTTGGAGCGTGGCTACAAACACCCAGTTCTCTTGCTTTACCCCTTTGGGGGTT---CAAAGGATGATGATGTCCCTCTGGAATGGAGGATGAAGCAGCATGCAACTGTATTGGAGGAGAGGGTCCTTGATCCGAAGTCAACCATTGTTGCAATCTTTCCATCTCCAATGTTATATGCTGGTTCCACAGAGgtgagtctaaggcttaccttgcacgacaggcccatctcaatctgttaaat Alignment from Pairagon ATGCCGTGTTTGCATTCCAGTTGCGCAATCCTGTCCACAATGGTCATGCCCTCCTGATGCAGGACACCCGCCGCAGGCTCCTGGAGAGGGGTTACAAGCACCCAGTCCTCCTGCTCCACCCTCTTGGGGGCTGGACCAAGGACGATGACGTACCTCTGGAATGGAGGATGAAACAGCATGCAGCTGTACTGGAGGAAAGGGTCCTGGATCCCAAGTCAACTATTGTTGCCATCTTTCCATCTCCTATGTTATATGCTGGTCCCACAGAG tgttactattaacggggagccttgacatacatctctatccgccagtacagATGCAGTATTTGCATTCCAGTTGCGCAACCCTGTTCACAATGGCCATGCTCTTCTCATGCAAGACACATGCCACAGGCTTTTGGAGCGTGGCTACAAACACCCAGTTCTCTTGCTTTACCCCTTTGGGGGTT---CAAAGGATGATGATGTCCCTCTGGAATGGAGGATGAAGCAGCATGCAACTGTATTGGAGGAGAGGGTCCTTGATCCGAAGTCAACCATTGTTGCAATCTTTCCATCTCCAATGTTATATGCTGGTTCCACAGAGgtgagtctaaggcttaccttgcacgacaggcccatctcaatctgttaaat Alignment from Exonerate_protein2genome ATGCCGTGTTTGCATTCCAGTTGCGCAATCCTGTCCACAATGGTCATGCCCTCCTGATGCAGGACACCCGCCGCAGGCTCCTGGAGAGGGGTTACAAGCACCCAGTCCTCCTGCTCCACCCTCTTGGGGGCTGGACCAAGGACGATGACGTACCTCTGGAATGGAGGATGAAACAGCATGCAGCTGTACTGGAGGAAAGGGTCCTGGATCCCAAGTCAACTATTGTTGCCATCTTTCCATCTCCTATGTTATATGCTGGTCCCACAGAG tgttactattaacggggagccttgacatacatctctatccgccagtacagATGCAGTATTTGCATTCCAGTTGCGCAACCCTGTTCACAATGGCCATGCTCTTCTCATGCAAGACACATGCCACAGGCTTTTGGAGCGTGGCTACAAACACCCAGTTCTCTTGCTTTACCCCTTTGGGGGT---TCAAAGGATGATGATGTCCCTCTGGAATGGAGGATGAAGCAGCATGCAACTGTATTGGAGGAGAGGGTCCTTGATCCGAAGTCAACCATTGTTGCAATCTTTCCATCTCCAATGTTATATGCTGGTTCCACAGAGgtgagtctaaggcttaccttgcacgacaggcccatctcaatctgttaaat Alignment from Exonerate_coding2genome ATGCCGTGTTTGCATTCCAGTTGCGCAATCCTGTCCACAATGGTCATGCCCTCCTGATGCAGGACACCCGCCGCAGGCTCCTGGAGAGGGGTTACAAGCACCCAGTCCTCCTGCTCCACCCTCTTGGGGGCTGGACCAAGGACGATGACGTACCTCTGGAATGGAGGATGAAACAGCATGCAGCTGTACTGGAGGAAAGGGTCCTGGATCCCAAGTCAACTATTGTTGCCATCTTTCCATCTCCTATGTTATATGCTGGTCCCACAGAG tgttactattaacggggagccttgacatacatctctatccgccagtacagATGCAGTATTTGCATTCCAGTTGCGCAACCCTGTTCACAATGGCCATGCTCTTCTCATGCAAGACACATGCCACAGGCTTTTGGAGCGTGGCTACAAACACCCAGTTCTCTTGCTTTACCCCTTTGGGGGT---TCAAAGGATGATGATGTCCCTCTGGAATGGAGGATGAAGCAGCATGCAACTGTATTGGAGGAGAGGGTCCTTGATCCGAAGTCAACCATTGTTGCAATCTTTCCATCTCCAATGTTATATGCTGGTTCCACAGAGgtgagtctaaggcttaccttgcacgacaggcccatctcaatctgttaaat Alignment from GeneWise ATGCCGTGTTTGCATTCCAGTTGCGCAATCCTGTCCACAATGGTCATGCCCTCCTGATGCAGGACACCCGCCGCAGGCTCCTGGAGAGGGGTTACAAGCACCCAGTCCTCCTGCTCCACCCTCTTGGGGGCTGGACCAAGGACGATGACGTACCTCTGGAATGGAGGATGAAACAGCATGCAGCTGTACTGGAGGAAAGGGTCCTGGATCCCAAGTCAACTATTGTTGCCATCTTTCCATCTCCTATGTTATATGCTGGTCCCACAGAG tgttactattaacggggagccttgacatacatctctatccgccagtacagATGCAGTATTTGCATTCCAGTTGCGCAACCCTGTTCACAATGGCCATGCTCTTCTCATGCAAGACACATGCCACAGGCTTTTGGAGCGTGGCTACAAACACCCAGTTCTCTTGCTTTACCCCTTTGGGGGT---TCAAAGGATGATGATGTCCCTCTGGAATGGAGGATGAAGCAGCATGCAACTGTATTGGAGGAGAGGGTCCTTGATCCGAAGTCAACCATTGTTGCAATCTTTCCATCTCCAATGTTATATGCTGGTTCCACAGAGgtgagtctaaggcttaccttgcacgacaggcccatctcaatctgttaaat #### Papss2_ID6717_11 --> 0 - 2 Original Alignment GTCCAGTGGCATTGCAGATGCCGGATGATTGCAGGAGCCAATTTCTACATTGTGGGTAGGGATCCCGCAGGAATGCCCCATCCTGAGACAAAGAAAGACCTATATGAACCCACCCACGGGGGCAAGGTCTTGAGTATGGCCCCTGGCCTTACCTCTGTGGAAATAATTCCGTTCCGAGTGGCTGCCTACAATAAAATTAAAAAGGCCATGGACTTTTATGATCCAGCAag ggataggtagagattacttcatttgatataagctttcctttggaaatcagGTACAGTGGCACTGTAGATGCCGGATGATTGCAGGAGCCAACTTCTACATTGTAAGTAGGGATCCTGCAGGAATGCCCCATCCTAAGACTAAGAAAGATCTATATGAACCTAGCCATGGTGGCAAGGTGCTGAGTATGGCTCCTGGTGTTACTTCTGTGAAAATAATTCCATTCCGAGTGGCTGCCTATAACAAAATTAAAAAAGCTATGGATTTTTATGATCCAGCAaggtaagttgtttgggctaggtaataaaaaaatatatttcaatctgacccaa Alignment from CESAR GTCCAGTGGCATTGCAGATGCCGGATGATTGCAGGAGCCAATTTCTACATTGTGGGTAGGGATCCCGCAGGAATGCCCCATCCTGAGACAAAGAAAGACCTATATGAACCCACCCACGGGGGCAAGGTCTTGAGTATGGCCCCTGGCCTTACCTCTGTGGAAATAATTCCGTTCCGAGTGGCTGCCTACAATAAAATTAAAAAGGCCATGGACTTTTATGATCCAGCAag ggataggtagagattacttcatttgatataagctttcctttggaaatcagGTACAGTGGCACTGTAGATGCCGGATGATTGCAGGAGCCAACTTCTACATTGTAAGTAGGGATCCTGCAGGAATGCCCCATCCTAAGACTAAGAAAGATCTATATGAACCTAGCCATGGTGGCAAGGTGCTGAGTATGGCTCCTGGTGTTACTTCTGTGAAAATAATTCCATTCCGAGTGGCTGCCTATAACAAAATTAAAAAAGCTATGGATTTTTATGATCCAGCAaggtaagttgtttgggctaggtaataaaaaaatatatttcaatctgacccaa Alignment from Spaln_aa2Genome GTCCAGTGGCATTGCAGATGCCGGATGATTGCAGGAGCCAATTTCTACATTGTGGGTAGGGATCCCGCAGGAATGCCCCATCCTGAGACAAAGAAAGACCTATATGAACCCACCCACGGGGGCAAGGTCTTGAGTATGGCCCCTGGCCTTACCTCTGTGGAAATAATTCCGTTCCGAGTGGCTGCCTACAATAAAATTAAAAAGGCCATGGACTTTTATGATCCAGCAAG ggataggtagagattacttcatttgatataagctttcctttggaaatcagGTACAGTGGCACTGTAGATGCCGGATGATTGCAGGAGCCAACTTCTACATTGTAAGTAGGGATCCTGCAGGAATGCCCCATCCTAAGACTAAGAAAGATCTATATGAACCTAGCCATGGTGGCAAGGTGCTGAGTATGGCTCCTGGTGTTACTTCTGTGAAAATAATTCCATTCCGAGTGGCTGCCTATAACAAAATTAAAAAAGCTATGGATTTTTATGATCCAGCAAGgtaagttgtttgggctaggtaataaaaaaatatatttcaatctgacccaa Alignment from Spaln_nt2Genome GTCCAGTGGCATTGCAGATGCCGGATGATTGCAGGAGCCAATTTCTACATTGTGGGTAGGGATCCCGCAGGAATGCCCCATCCTGAGACAAAGAAAGACCTATATGAACCCACCCACGGGGGCAAGGTCTTGAGTATGGCCCCTGGCCTTACCTCTGTGGAAATAATTCCGTTCCGAGTGGCTGCCTACAATAAAATTAAAAAGGCCATGGACTTTTATGATCCAGCAAG ggataggtagagattacttcatttgatataagctttcctttggaaatcagGTACAGTGGCACTGTAGATGCCGGATGATTGCAGGAGCCAACTTCTACATTGTAAGTAGGGATCCTGCAGGAATGCCCCATCCTAAGACTAAGAAAGATCTATATGAACCTAGCCATGGTGGCAAGGTGCTGAGTATGGCTCCTGGTGTTACTTCTGTGAAAATAATTCCATTCCGAGTGGCTGCCTATAACAAAATTAAAAAAGCTATGGATTTTTATGATCCAGCAAGgtaagttgtttgggctaggtaataaaaaaatatatttcaatctgacccaa Alignment from Pairagon GTCCAGTGGCATTGCAGATGCCGGATGATTGCAGGAGCCAATTTCTACATTGTGGGTAGGGATCCCGCAGGAATGCCCCATCCTGAGACAAAGAAAGACCTATATGAACCCACCCACGGGGGCAAGGTCTTGAGTATGGCCCCTGGCCTTACCTCTGTGGAAATAATTCCGTTCCGAGTGGCTGCCTACAATAAAATTAAAAAGGCCATGGACTTTTATGATCCAGCAAG ggataggtagagattacttcatttgatataagctttcctttggaaatcagGTACAGTGGCACTGTAGATGCCGGATGATTGCAGGAGCCAACTTCTACATTGTAAGTAGGGATCCTGCAGGAATGCCCCATCCTAAGACTAAGAAAGATCTATATGAACCTAGCCATGGTGGCAAGGTGCTGAGTATGGCTCCTGGTGTTACTTCTGTGAAAATAATTCCATTCCGAGTGGCTGCCTATAACAAAATTAAAAAAGCTATGGATTTTTATGATCCAGCAAGgtaagttgtttgggctaggtaataaaaaaatatatttcaatctgacccaa Alignment from Exonerate_protein2genome GTCCAGTGGCATTGCAGATGCCGGATGATTGCAGGAGCCAATTTCTACATTGTGGGTAGGGATCCCGCAGGAATGCCCCATCCTGAGACAAAGAAAGACCTATATGAACCCACCCACGGGGGCAAGGTCTTGAGTATGGCCCCTGGCCTTACCTCTGTGGAAATAATTCCGTTCCGAGTGGCTGCCTACAATAAAATTAAAAAGGCCATGGACTTTTATGATCCAGCAAG ggataggtagagattacttcatttgatataagctttcctttggaaatcagGTACAGTGGCACTGTAGATGCCGGATGATTGCAGGAGCCAACTTCTACATTGTAAGTAGGGATCCTGCAGGAATGCCCCATCCTAAGACTAAGAAAGATCTATATGAACCTAGCCATGGTGGCAAGGTGCTGAGTATGGCTCCTGGTGTTACTTCTGTGAAAATAATTCCATTCCGAGTGGCTGCCTATAACAAAATTAAAAAAGCTATGGATTTTTATGATCCAGCAAGgtaagttgtttgggctaggtaataaaaaaatatatttcaatctgacccaa Alignment from Exonerate_coding2genome GTCCAGTGGCATTGCAGATGCCGGATGATTGCAGGAGCCAATTTCTACATTGTGGGTAGGGATCCCGCAGGAATGCCCCATCCTGAGACAAAGAAAGACCTATATGAACCCACCCACGGGGGCAAGGTCTTGAGTATGGCCCCTGGCCTTACCTCTGTGGAAATAATTCCGTTCCGAGTGGCTGCCTACAATAAAATTAAAAAGGCCATGGACTTTTATGATCCAGCAAG ggataggtagagattacttcatttgatataagctttcctttggaaatcagGTACAGTGGCACTGTAGATGCCGGATGATTGCAGGAGCCAACTTCTACATTGTAAGTAGGGATCCTGCAGGAATGCCCCATCCTAAGACTAAGAAAGATCTATATGAACCTAGCCATGGTGGCAAGGTGCTGAGTATGGCTCCTGGTGTTACTTCTGTGAAAATAATTCCATTCCGAGTGGCTGCCTATAACAAAATTAAAAAAGCTATGGATTTTTATGATCCAGCAAGgtaagttgtttgggctaggtaataaaaaaatatatttcaatctgacccaa Alignment from GeneWise GTCCAGTGGCATTGCAGATGCCGGATGATTGCAGGAGCCAATTTCTACATTGTGGGTAGGGATCCCGCAGGAATGCCCCATCCTGAGACAAAGAAAGACCTATATGAACCCACCCACGGGGGCAAGGTCTTGAGTATGGCCCCTGGCCTTACCTCTGTGGAAATAATTCCGTTCCGAGTGGCTGCCTACAATAAAATTAAAAAGGCCATGGACTTTTATGATCCAGCAAG ggataggtagagattacttcatttgatataagctttcctttggaaatcagGTACAGTGGCACTGTAGATGCCGGATGATTGCAGGAGCCAACTTCTACATTGTAAGTAGGGATCCTGCAGGAATGCCCCATCCTAAGACTAAGAAAGATCTATATGAACCTAGCCATGGTGGCAAGGTGCTGAGTATGGCTCCTGGTGTTACTTCTGTGAAAATAATTCCATTCCGAGTGGCTGCCTATAACAAAATTAAAAAAGCTATGGATTTTTATGATCCAGCAAGgtaagttgtttgggctaggtaataaaaaaatatatttcaatctgacccaa #### Patl1_ID3328_13 --> 0 - 0 Original Alignment GAAACAAAAGAAAAACAAGTTCGGGATAAGAGAAGAAAAACCCTTGTTATAATTGAGAAA tgcacctttggaggtaataacataattcgttctcttccccatcgttccagGAGACAAATGAGAAACAAGTTAGGGGGAAAAGCAGAAAAACACTTCTCATAATTGAGGAAgtaagagccaagtgtataaccttgctgctataggagtgtgctagttgctt Alignment from CESAR GAAACAAAAGAAAAACAAGTTCGGGATAAGAGAAGAAAAACCCTTGTTATAATTGAGAAA tgcacctttggaggtaataacataattcgttctcttccccatcgttccagGAGACAAATGAGAAACAAGTTAGGGGGAAAAGCAGAAAAACACTTCTCATAATTGAGGAAgtaagagccaagtgtataaccttgctgctataggagtgtgctagttgctt Alignment from Spaln_aa2Genome GAAACAAAAGAAAAACAAGTTCGGGATAAGAGAAGAAAAACCCTTGTTATAATTGAGAAA tgcacctttggaggtaataacataattcgttctcttccccatcgttccagGAGACAAATGAGAAACAAGTTAGGGGGAAAAGCAGAAAAACACTTCTCATAATTGAGGAAgtaagagccaagtgtataaccttgctgctataggagtgtgctagttgctt Alignment from Spaln_nt2Genome GAAACAAAAGAAAAACAAGTTCGGGATAAGAGAAGAAAAACCCTTGTTATAATTGAGAAA tgcacctttggaggtaataacataattcgttctcttccccatcgttccagGAGACAAATGAGAAACAAGTTAGGGGGAAAAGCAGAAAAACACTTCTCATAATTGAGGAAgtaagagccaagtgtataaccttgctgctataggagtgtgctagttgctt Alignment from Pairagon GAAACAAAAGAAAAACAAGTTCGGGATAAGAGAAGAAAAACCCTTGTTATAATTGAGAAA tgcacctttggaggtaataacataattcgttctcttccccatcgttccagGAGACAAATGAGAAACAAGTTAGGGGGAAAAGCAGAAAAACACTTCTCATAATTGAGGAAgtaagagccaagtgtataaccttgctgctataggagtgtgctagttgctt Alignment from Exonerate_protein2genome GAAACAAAAGAAAAACAAGTTCGGGATAAGAGAAGAAAAACCCTTGTTATAATTGAGAAA tgcacctttggaggtaataacataattcgttctcttccccatcgttccagGAGACAAATGAGAAACAAGTTAGGGGGAAAAGCAGAAAAACACTTCTCATAATTGAGGAAgtaagagccaagtgtataaccttgctgctataggagtgtgctagttgctt Alignment from Exonerate_coding2genome GAAACAAAAGAAAAACAAGTTCGGGATAAGAGAAGAAAAACCCTTGTTATAATTGAGAAA tgcacctttggaggtaataacataattcgttctcttccccatcgttccagGAGACAAATGAGAAACAAGTTAGGGGGAAAAGCAGAAAAACACTTCTCATAATTGAGGAAgtaagagccaagtgtataaccttgctgctataggagtgtgctagttgctt Alignment from GeneWise GAAACAAAAGAAAAACAAGTTCGGGATAAGAGAAGAAAAACCCTTGTTATAATTGAGAAA tgcacctttggaggtaataacataattcgttctcttccccatcgttccagGAGACAAATGAGAAACAAGTTAGGGGGAAAAGCAGAAAAACACTTCTCATAATTGAGGAAgtaagagccaagtgtataaccttgctgctataggagtgtgctagttgctt #### Pcnxl3_ID1164_29 --> 0 - 2 Original Alignment CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCag agggatgttaccctgggctcttgagtaagttcgttcctctgtcattccagCCTGTGGACCAGGATTGGAATTCACCATTGGTTACATCATGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGCACAGCAGCACACAGCATGTCAGCCaggtaagtgcctgcaggcagcaaaagaagacccaacaactcattagtagact Alignment from CESAR CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCag agggatgttaccctgggctcttgagtaagttcgttcctctgtcattccagCCTGTGGACCAGGATTGGAATTCACCATTGGTTACATCATGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGCACAGCAGCACACAGCATGTCAGCCaggtaagtgcctgcaggcagcaaaagaagacccaacaactcattagtagact Alignment from Spaln_aa2Genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG agggatgttaccctgggctcttgagtaagttcgttcctctgtcattccagCCTGTGGACCAGGATTGGAATTCACCATTGGTTACATCATGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGCACAGCAGCACACAGCATGTCAGCCAGgtaagtgcctgcaggcagcaaaagaagacccaacaactcattagtagact Alignment from Spaln_nt2Genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG agggatgttaccctgggctcttgagtaagttcgttcctctgtcattccagCCTGTGGACCAGGATTGGAATTCACCATTGGTTACATCATGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGCACAGCAGCACACAGCATGTCAGCCAGgtaagtgcctgcaggcagcaaaagaagacccaacaactcattagtagact Alignment from Pairagon CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG agggatgttaccctgggctcttgagtaagttcgttcctctgtcattccagCCTGTGGACCAGGATTGGAATTCACCATTGGTTACATCATGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGCACAGCAGCACACAGCATGTCAGCCAGgtaagtgcctgcaggcagcaaaagaagacccaacaactcattagtagact Alignment from Exonerate_protein2genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG agggatgttaccctgggctcttgagtaagttcgttcctctgtcattccagCCTGTGGACCAGGATTGGAATTCACCATTGGTTACATCATGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGCACAGCAGCACACAGCATGTCAGCCAGgtaagtgcctgcaggcagcaaaagaagacccaacaactcattagtagact Alignment from Exonerate_coding2genome agggatgttaccctgggctcttgagtaagttcgttcctctgtcattccagcctgtggaccaggattggaattcaccattggttacatcatgctttggcttgtgtgtgttgggtcgccgggctctgggcacagcagcacacagcatgtcagccaggtaagtgcctgcaggcagcaaaagaagacccaacaactcattagtagact Alignment from GeneWise CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG agggatgttaccctgggctcttgagtaagttcgttcctctgtcattccagCCTGTGGACCAGGATTGGAATTCACCATTGGTTACATCATGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGCACAGCAGCACACAGCATGTCAGCCAGgtaagtgcctgcaggcagcaaaagaagacccaacaactcattagtagact #### Pcnxl3_ID1180_13 --> 0 - 0 Original Alignment AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC atgggcctcaatactataccccgccaacatctctttgcttttctatttagAGCATCCAACCTGATGCAGCATCACCCATGCATgtaagtatgtgaagaaattgctgatgctaacttacatgtgatctagtatg Alignment from CESAR AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC atgggcctcaatactataccccgccaacatctctttgcttttctatttagAGCATCCAACCTGATGCAGCATCACCCATGCATgtaagtatgtgaagaaattgctgatgctaacttacatgtgatctagtatg Alignment from Spaln_aa2Genome AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC atgggcctcaatactataccccgccaacatctctttgcttttctatttagAGCATCCAACCTGATGCAGCATCACCCATGCATgtaagtatgtgaagaaattgctgatgctaacttacatgtgatctagtatg Alignment from Spaln_nt2Genome AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC atgggcctcaatactataccccgccaacatctctttgcttttctatttagAGCATCCAACCTGATGCAGCATCACCCATGCATgtaagtatgtgaagaaattgctgatgctaacttacatgtgatctagtatg Alignment from Pairagon AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC atgggcctcaatactataccccgccaacatctctttgcttttctatttagAGCATCCAACCTGATGCAGCATCACCCATGCATgtaagtatgtgaagaaattgctgatgctaacttacatgtgatctagtatg Alignment from Exonerate_protein2genome AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC atgggcctcaatactataccccgccaacatctctttgcttttctatttagAGCATCCAACCTGATGCAGCATCACCCATGCATgtaagtatgtgaagaaattgctgatgctaacttacatgtgatctagtatg Alignment from Exonerate_coding2genome AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC atgggcctcaatactataccccgccaacatctctttgcttttctatttagAGCATCCAACCTGATGCAGCATCACCCATGCATgtaagtatgtgaagaaattgctgatgctaacttacatgtgatctagtatg Alignment from GeneWise AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC atgggcctcaatactataccccgccaacatctctttgcttttctatttagAGCATCCAACCTGATGCAGCATCACCCATGCATgtaagtatgtgaagaaattgctgatgctaacttacatgtgatctagtatg #### Pcnxl3_ID1183_10 --> 1 - 0 Original Alignment gGACCGTCACTCACATTCCTCCAGCTTCCACTCAGCTGATGTGCCTGAAGCCACGGGAGGCTTGAACCTGTTGCAGCCAAGGCCAGTAGTTCTTCAGGGTATGCAGGTGCGCAGGGTGCCC------------------CTGGAAATCCCAGAG tcaatgatttctctaggtccagacggctgttgtgcttgttatttttacaggGACCGTCACTCACATTCCTCCAGCATTTACTCAGCTGATGTACCTGTTGCCACGGGAGGCTTGAACCTGTTGCAACCAAGGCCATTAGTTTTTGAAGGCATGCAAGTACATAGGGTGCCTCTCGGGATCCCCCTGGGGATGGGCATTCCAGATgtgagtaacagcttttggatcaatataaaatgatctgttcattgagggaa Alignment from CESAR gGACCGTCACTCACATTCCTCCAGCTTCCACTCAGCTGATGTGCCTGAAGCCACGGGAGGCTTGAACCTGTTGCAGCCAAGGCCAGTAGTTCTTCAGGGTATGCAGGTGCGCAGGGTGCCCCTGGAAATC------------------CCAGAG tcaatgatttctctaggtccagacggctgttgtgcttgttatttttacaggGACCGTCACTCACATTCCTCCAGCATTTACTCAGCTGATGTACCTGTTGCCACGGGAGGCTTGAACCTGTTGCAACCAAGGCCATTAGTTTTTGAAGGCATGCAAGTACATAGGGTGCCTCTCGGGATCCCCCTGGGGATGGGCATTCCAGATgtgagtaacagcttttggatcaatataaaatgatctgttcattgagggaa Alignment from Spaln_aa2Genome GGACCGTCACTCACATTCCTCCAGCTTCCACTCAGCTGATGTGCCTGAAGCCACGGGAGGCTTGAACCTGTTGCAGCCAAGGCCAGTAGTTCTTCAGGGTATGCAGGTGCGCAGGGTGCCCCTG------------------GAAATCCCAGAG tcaatgatttctctaggtccagacggctgttgtgcttgttatttttacagGGACCGTCACTCACATTCCTCCAGCATTTACTCAGCTGATGTACCTGTTGCCACGGGAGGCTTGAACCTGTTGCAACCAAGGCCATTAGTTTTTGAAGGCATGCAAGTACATAGGGTGCCTCTCGGGATCCCCCTGGGGATGGGCATTCCAGATgtgagtaacagcttttggatcaatataaaatgatctgttcattgagggaa Alignment from Spaln_nt2Genome GGACCGTCACTCACATTCCTCCAGCTTCCACTCAGCTGATGTGCCTGAAGCCACGGGAGGCTTGAACCTGTTGCAGCCAAGGCCAGTAGTTCTTCAGGGTATGCAGGTGCGCAGGGTGCCCCTGGAAATCCC-------AGAG tcaatgatttctctaggtccagacggctgttgtgcttgttatttttacagGGACCGTCACTCACATTCCTCCAGCATTTACTCAGCTGATGTACCTGTTGCCACGGGAGGCTTGAACCTGTTGCAACCAAGGCCATTAGTTTTTGAAGGCATGCAAGTACATAGGGTGCCTCTCGGGATCCCCCTGGGGATGGgcattccagatgtgagtaacagcttttggatcaatataaaatgatctgttcattgagggaa Alignment from Pairagon GGACCGTCACTCACATTCCTCCAGCTTCCACTCAGCTGATGTGCCTGAAGCCACGGGAGGCTTGAACCTGTTGCAGCCAAGGCCAGTAGTTCTTCAGGGTATGCAGGTGCGCAGGGTGCCCC------------------TGGAAATCCCAGAG tcaatgatttctctaggtccagacggctgttgtgcttgttatttttacagGGACCGTCACTCACATTCCTCCAGCATTTACTCAGCTGATGTACCTGTTGCCACGGGAGGCTTGAACCTGTTGCAACCAAGGCCATTAGTTTTTGAAGGCATGCAAGTACATAGGGTGCCTCTCGGGATCCCCCTGGGGATGGGCATTCCAGATgtgagtaacagcttttggatcaatataaaatgatctgttcattgagggaa Alignment from Exonerate_protein2genome GGACCGTCACTCACATTCCTCCAGCTTCCACTCAGCTGATGTGCCTGAAGCCACGGGAGGCTTGAACCTGTTGCAGCCAAGGCCAGTAGTTCTTCAGGGTATGCAGGTGCGCAGGGTGCCCCTGGAAATCCCAGAG tcaatgatttctctaggtccagacggctgttgtgcttgttatttttacagGGACCGTCACTCACATTCCTCCAGCATTTACTCAGCTGATGTACCTGTTGCCACGGGAGGCTTGAACCTGTTGCAACCAAGGCCATTAGTTTTTGAAGGCATGCAAGTACATAGGGTGCCTCTCGGGATCCCCCTGgggatgggcattccagatgtgagtaacagcttttggatcaatataaaatgatctgttcattgagggaa Alignment from Exonerate_coding2genome GGACCGTCACTCACATTCCTCCAGCTTCCACTCAGCTGATGTGCCTGAAGCCACGGGAGGCTTGAACCTGTTGCAGCCAAGGCCAGTAGTTCTTCAGGGTATGCAGGTGCGCAGGGTGCCCCTGGAAATCCCAGAG tcaatgatttctctaggtccagacggctgttgtgcttgttatttttacagGGACCGTCACTCACATTCCTCCAGCATTTACTCAGCTGATGTACCTGTTGCCACGGGAGGCTTGAACCTGTTGCAACCAAGGCCATTAGTTTTTGAAGGCATGCAAGTACATAGGGTGCCTCTCGGGATCCCCCTGgggatgggcattccagatgtgagtaacagcttttggatcaatataaaatgatctgttcattgagggaa Alignment from GeneWise GGACCGTCACTCACATTCCTCCAGCTTCCACTCAGCTGATGTGCCTGAAGCCACGGGAGGCTTGAACCTGTTGCAGCCAAGGCCAGTAGTTCTTCAGGGTATGCAGGTGCGCAGGGTGCCCCTGGAAATCCCA------------------GAG tcaatgatttctctaggtccagacggctgttgtgcttgttatttttacagGGACCGTCACTCACATTCCTCCAGCATTTACTCAGCTGATGTACCTGTTGCCACGGGAGGCTTGAACCTGTTGCAACCAAGGCCATTAGTTTTTGAAGGCATGCAAGTACATAGGGTGCCTCTCGGGATCCCCCTGGGGATGGGCATTCCAGATgtgagtaacagcttttggatcaatataaaatgatctgttcattgagggaa #### Pcnxl3_ID1184_9 --> 2 - 2 Original Alignment gtGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCAGCCAATGGAGCCtg ctattccttttagcttttcttgtttttttgtccttttttcttcctttcaggtGTACGACAGTCATATACCTTTGGCCTATCCGGAGGTGGCTATGAGAACCCTGTGAGTCAGCCAGGTGAGCAGGCTGCCAATGGAGCTtggtaagtacccacacagatagggccagatttgtaatgaatattgttgcccc Alignment from CESAR gtGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCAGCCAATGGAGCCtg ctattccttttagcttttcttgtttttttgtccttttttcttcctttcaggtGTACGACAGTCATATACCTTTGGCCTATCCGGAGGTGGCTATGAGAACCCTGTGAGTCAGCCAGGTGAGCAGGCTGCCAATGGAGCTtggtaagtacccacacagatagggccagatttgtaatgaatattgttgcccc Alignment from Spaln_aa2Genome GTGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCAGCCAATGGAGCCTG ctattccttttagcttttcttgtttttttgtccttttttcttcctttcagGTGTACGACAGTCATATACCTTTGGCCTATCCGGAGGTGGCTATGAGAACCCTGTGAGTCAGCCAGGTGAGCAGGCTGCCAATGGAGCTTGgtaagtacccacacagatagggccagatttgtaatgaatattgttgcccc Alignment from Spaln_nt2Genome GTGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCAGCCAATGGAGCCTG ctattccttttagcttttcttgtttttttgtccttttttcttcctttcagGTGTACGACAGTCATATACCTTTGGCCTATCCGGAGGTGGCTATGAGAACCCTGTGAGTCAGCCAGGTGAGCAGGCTGCCAATGGAGCTTGgtaagtacccacacagatagggccagatttgtaatgaatattgttgcccc Alignment from Pairagon GTGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCAGCCAATGGAGCCTG ctattccttttagcttttcttgtttttttgtccttttttcttcctttcagGTGTACGACAGTCATATACCTTTGGCCTATCCGGAGGTGGCTATGAGAACCCTGTGAGTCAGCCAGGTGAGCAGGCTGCCAATGGAGCTTGgtaagtacccacacagatagggccagatttgtaatgaatattgttgcccc Alignment from Exonerate_protein2genome GTGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCAGCCAATGGAGCCTG ctattccttttagcttttcttgtttttttgtccttttttcttcctttcagGTGTACGACAGTCATATACCTTTGGCCTATCCGGAGGTGGCTATGAGAACCCTGTGAGTCAGCCAGGTGAGCAGGCTGCCAATGGAGCTTGgtaagtacccacacagatagggccagatttgtaatgaatattgttgcccc Alignment from Exonerate_coding2genome GTGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCAGCCAATGGAGCCTG ctattccttttagcttttcttgtttttttgtccttttttcttcctttcagGTGTACGACAGTCATATACCTTTGGCCTATCCGGAGGTGGCTATGAGAACCCTGTGAGTCAGCCAGGTGAGCAGGCTGCCAATGGAGCTTGgtaagtacccacacagatagggccagatttgtaatgaatattgttgcccc Alignment from GeneWise GTGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCAGCCAATGGAGCCTG ctattccttttagcttttcttgtttttttgtccttttttcttcctttcagGTGTACGACAGTCATATACCTTTGGCCTATCCGGAGGTGGCTATGAGAACCCTGTGAGTCAGCCAGGTGAGCAGGCTGCCAATGGAGCTTGgtaagtacccacacagatagggccagatttgtaatgaatattgttgcccc #### Pcnxl3_ID1187_6 --> 2 - 1 Original Alignment ttGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGACCCCTCTCTCCCCAGTACGGATTCTTCCGAGCGTTCTCCCATGGCTGGAGATGGTGTCCCCTGGGGTGGGAGCGGTGTGGCTGACACTCCCATGAGCCCTTTACTGAAAGGGAGCCTCAGCCAGGAGCTAAGCAAGAGCTTTCTGACCCTGACCCGGCCTGACCGGGCCCTAGTGAGGACCAGTAGTCGGCGGGAACAATGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCGGAGGGGCTCAGGTGACCCCATGCCCCAGAAAGCTGGCTCTTCGGATTCCTGCTTCAGTGGCACTGACAGGGAGACTCTGAGCAGCTTCAAGAGTGAGAAGACTAACTCTACACACCTCGACAGTCCCCCTGGTGGGCATGCT---CCCGAGGGCAGCGACACAGACCCTCCTTCTGAGGCTGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGACACACTTCGTTCCTTTGACACAGTCATTGGAGCAGGGACACCACCGGGCCAAACGGAGCCGCTCCTGGTTGTGCGGCCCAAGGACTTGGCCCTGCTTCGGCCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCGTACCCCAAGACGGCCCTTGCTTGAGGGCTCAGGCTTCTTTGAAGATGAAGATACCAGTGAAGGTAGTGAGCTGAGTCCAGCATCCAGTCTCCGGTCTCAGCGCCGCTATAGCACTGATAGCTCCTCGTCTACTTCTTGCTACTCCCCCGAGAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCGGGCCCCTCATGGGGCCGAAGAAGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACCCAGCGGACGCCCAGTACTGCCAGTGCCAAAACTCATGCCCGTGTGTTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCGGGCTCCAAGGCTGAGCTGGAGGCCCAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGTGTTGCCTCCTGAAGCCCGGAGGGGACCCGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAGGAGGAAGGTGCTGTAGGGGGAg atttgtccttctgaattctatgcaactagccctgttcttgctttctacagttGGAGATCTTCCCCAGACACCACCAGGGGTTGTTCCGGATCCTGCTCTTCCGAGTACAGATTCTTCAGAACGATCCCCAATGGCAGGGGATGGGGTCCCCTGGGGGGGGTGTGGAGTGGCTGACACACCTATGAGCCCTTTGCTGAAAGGGAGCCTCAGCCAAGAGCTAAGCAAGACCTTTCTTACCCTTACACAGCCTGATCAGGCACTAGTAAGGACAAGTAGTCGACGGGAACGATGTCGGGGAACTGGAGGCTACCAGCCCTCGGACCAGAGGGGCTCAGGTGACCCTATGCCCCAAAAAGCTGGATCCTCCGACTCCTGCTTCAGTGGTACAGAAAGGGAGACTCTAAGTTGCTTTAAAAGTGAGAAGACCAACTCTACACACCTTGACAGCCCACCCGGTGGGCATGCCCCTCCTGAGGGTAGTGACACAGACCCTCCTTCTGAAGTAGAGCTTCCTGCATCCCCAGATGCTGGGGTCCCCTCAGTTGATGCACTTCATTCATTTGACACCATCATTGGAGCAGGGACACCATCTGGCCAAACAGAACCACTTTTGGTGGTGCAACCTAAAGATTTGGCTCTACTTCCACCTAGTAAGCGGCAGCCCCCC---CGAGAACATTCCCCACCTGGTCATATCCCAAGACGATCTGTGCTTGAGGGATCAGGATTTTTTGAAGATGAAGATACCAGTGAAGGCGGTGAATTGACCCCAGCATCCAGTCTGCGGTGCAAGCTCCGCTATAGCACAGATAGTTCATCCTCCACTTCCTGCTACTCACCTGAAAGCTCCCAGGGTTCAGCAGGAGGTCCTCGGAAGCGGCAGGCGCCGCATGGAACCGAAGAGGGAACTGCTGTGCCCCCTAAACGACCCTATGGGACACAACGGAGCCCGAGTGCTGCTAGTGCAAAAACTCATGCCCGTGTGTTGAGCATGGATGGAGCAGGGGGTGATGTCCTACGGGCACTCCTTGCCGGTTCTAAAGCTGAGTTGGATGCTAAGCCAGGGATGGAGTTGGCTGCTGGTGAGCCAGCAGGGTCACCACCTGAGGCCCGAAGGGGACCTGCCACCAACCAGCCTGGCTGGCGGGGAGAATTGCAAGAGCAAGGAGCTGTAGGAGGGggtaactgtcttaattgtctgctggagcatgttaacaagggcaaccttgta Alignment from CESAR ttGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGACCCCTCTCTCCCCAGTACGGATTCTTCCGAGCGTTCTCCCATGGCTGGAGATGGTGTCCCCTGGGGTGGGAGCGGTGTGGCTGACACTCCCATGAGCCCTTTACTGAAAGGGAGCCTCAGCCAGGAGCTAAGCAAGAGCTTTCTGACCCTGACCCGGCCTGACCGGGCCCTAGTGAGGACCAGTAGTCGGCGGGAACAATGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCGGAGGGGCTCAGGTGACCCCATGCCCCAGAAAGCTGGCTCTTCGGATTCCTGCTTCAGTGGCACTGACAGGGAGACTCTGAGCAGCTTCAAGAGTGAGAAGACTAACTCTACACACCTCGACAGTCCCCCTGGTGGGCATGCTCCC---GAGGGCAGCGACACAGACCCTCCTTCTGAGGCTGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGACACACTTCGTTCCTTTGACACAGTCATTGGAGCAGGGACACCACCGGGCCAAACGGAGCCGCTCCTGGTTGTGCGGCCCAAGGACTTGGCCCTGCTTCGGCCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCGTACCCCAAGACGGCCCTTGCTTGAGGGCTCAGGCTTCTTTGAAGATGAAGATACCAGTGAAGGTAGTGAGCTGAGTCCAGCATCCAGTCTCCGGTCTCAGCGCCGCTATAGCACTGATAGCTCCTCGTCTACTTCTTGCTACTCCCCCGAGAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCGGGCCCCTCATGGGGCCGAAGAAGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACCCAGCGGACGCCCAGTACTGCCAGTGCCAAAACTCATGCCCGTGTGTTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCGGGCTCCAAGGCTGAGCTGGAGGCCCAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGTGTTGCCTCCTGAAGCCCGGAGGGGACCCGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAGGAGGAAGGTGCTGTAGGGGGAg atttgtccttctgaattctatgcaactagccctgttcttgctttctacagttGGAGATCTTCCCCAGACACCACCAGGGGTTGTTCCGGATCCTGCTCTTCCGAGTACAGATTCTTCAGAACGATCCCCAATGGCAGGGGATGGGGTCCCCTGGGGGGGGTGTGGAGTGGCTGACACACCTATGAGCCCTTTGCTGAAAGGGAGCCTCAGCCAAGAGCTAAGCAAGACCTTTCTTACCCTTACACAGCCTGATCAGGCACTAGTAAGGACAAGTAGTCGACGGGAACGATGTCGGGGAACTGGAGGCTACCAGCCCTCGGACCAGAGGGGCTCAGGTGACCCTATGCCCCAAAAAGCTGGATCCTCCGACTCCTGCTTCAGTGGTACAGAAAGGGAGACTCTAAGTTGCTTTAAAAGTGAGAAGACCAACTCTACACACCTTGACAGCCCACCCGGTGGGCATGCCCCTCCTGAGGGTAGTGACACAGACCCTCCTTCTGAAGTAGAGCTTCCTGCATCCCCAGATGCTGGGGTCCCCTCAGTTGATGCACTTCATTCATTTGACACCATCATTGGAGCAGGGACACCATCTGGCCAAACAGAACCACTTTTGGTGGTGCAACCTAAAGATTTGGCTCTACTTCCACCTAGTAAGCGGCAGCCCCCC---CGAGAACATTCCCCACCTGGTCATATCCCAAGACGATCTGTGCTTGAGGGATCAGGATTTTTTGAAGATGAAGATACCAGTGAAGGCGGTGAATTGACCCCAGCATCCAGTCTGCGGTGCAAGCTCCGCTATAGCACAGATAGTTCATCCTCCACTTCCTGCTACTCACCTGAAAGCTCCCAGGGTTCAGCAGGAGGTCCTCGGAAGCGGCAGGCGCCGCATGGAACCGAAGAGGGAACTGCTGTGCCCCCTAAACGACCCTATGGGACACAACGGAGCCCGAGTGCTGCTAGTGCAAAAACTCATGCCCGTGTGTTGAGCATGGATGGAGCAGGGGGTGATGTCCTACGGGCACTCCTTGCCGGTTCTAAAGCTGAGTTGGATGCTAAGCCAGGGATGGAGTTGGCTGCTGGTGAGCCAGCAGGGTCACCACCTGAGGCCCGAAGGGGACCTGCCACCAACCAGCCTGGCTGGCGGGGAGAATTGCAAGAGCAAGGAGCTGTAGGAGGGggtaactgtcttaattgtctgctggagcatgttaacaagggcaaccttgta Alignment from Spaln_aa2Genome TTGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGACCCCTCTCTCCCCAGTACGGATTCTTCCGAGCGTTCTCCCATGGCTGGAGATGGTGTCCCCTGGGGTGGGAGCGGTGTGGCTGACACTCCCATGAGCCCTTTACTGAAAGGGAGCCTCAGCCAGGAGCTAAGCAAGAGCTTTCTGACCCTGACCCGGCCTGACCGGGCCCTAGTGAGGACCAGTAGTCGGCGGGAACAATGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCGGAGGGGCTCAGGTGACCCCATGCCCCAGAAAGCTGGCTCTTCGGATTCCTGCTTCAGTGGCACTGACAGGGAGACTCTGAGCAGCTTCAAGAGTGAGAAGACTAACTCTACACACCTCGACAGTCCCCCTGGTGGGCATGCT---CCCGAGGGCAGCGACACAGACCCTCCTTCTGAGGCTGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGACACACTTCGTTCCTTTGACACAGTCATTGGAGCAGGGACACCACCGGGCCAAACGGAGCCGCTCCTGGTTGTGCGGCCCAAGGACTTGGCCCTGCTTCGGCCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCGTACCCCAAGACGGCCCTTGCTTGAGGGCTCAGGCTTCTTTGAAGATGAAGATACCAGTGAAGGTAGTGAGCTGAGTCCAGCATCCAGTCTCCGGTCTCAGCGCCGCTATAGCACTGATAGCTCCTCGTCTACTTCTTGCTACTCCCCCGAGAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCGGGCCCCTCATGGGGCCGAAGAAGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACCCAGCGGACGCCCAGTACTGCCAGTGCCAAAACTCATGCCCGTGTGTTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCGGGCTCCAAGGCTGAGCTGGAGGCCCAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGTGTTGCCTCCTGAAGCCCGGAGGGGACCCGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAGGAGGAAGGTGCTGTAGGGGGAG atttgtccttctgaattctatgcaactagccctgttcttgctttctacagTTGGAGATCTTCCCCAGACACCACCAGGGGTTGTTCCGGATCCTGCTCTTCCGAGTACAGATTCTTCAGAACGATCCCCAATGGCAGGGGATGGGGTCCCCTGGGGGGGGTGTGGAGTGGCTGACACACCTATGAGCCCTTTGCTGAAAGGGAGCCTCAGCCAAGAGCTAAGCAAGACCTTTCTTACCCTTACACAGCCTGATCAGGCACTAGTAAGGACAAGTAGTCGACGGGAACGATGTCGGGGAACTGGAGGCTACCAGCCCTCGGACCAGAGGGGCTCAGGTGACCCTATGCCCCAAAAAGCTGGATCCTCCGACTCCTGCTTCAGTGGTACAGAAAGGGAGACTCTAAGTTGCTTTAAAAGTGAGAAGACCAACTCTACACACCTTGACAGCCCACCCGGTGGGCATGCCCCTCCTGAGGGTAGTGACACAGACCCTCCTTCTGAAGTAGAGCTTCCTGCATCCCCAGATGCTGGGGTCCCCTCAGTTGATGCACTTCATTCATTTGACACCATCATTGGAGCAGGGACACCATCTGGCCAAACAGAACCACTTTTGGTGGTGCAACCTAAAGATTTGGCTCTACTTCCACCTAGTAAGCGGCAGCCCCCC---CGAGAACATTCCCCACCTGGTCATATCCCAAGACGATCTGTGCTTGAGGGATCAGGATTTTTTGAAGATGAAGATACCAGTGAAGGCGGTGAATTGACCCCAGCATCCAGTCTGCGGTGCAAGCTCCGCTATAGCACAGATAGTTCATCCTCCACTTCCTGCTACTCACCTGAAAGCTCCCAGGGTTCAGCAGGAGGTCCTCGGAAGCGGCAGGCGCCGCATGGAACCGAAGAGGGAACTGCTGTGCCCCCTAAACGACCCTATGGGACACAACGGAGCCCGAGTGCTGCTAGTGCAAAAACTCATGCCCGTGTGTTGAGCATGGATGGAGCAGGGGGTGATGTCCTACGGGCACTCCTTGCCGGTTCTAAAGCTGAGTTGGATGCTAAGCCAGGGATGGAGTTGGCTGCTGGTGAGCCAGCAGGGTCACCACCTGAGGCCCGAAGGGGACCTGCCACCAACCAGCCTGGCTGGCGGGGAGAATTGCAAGAGCAAGGAGCTGTAGGAGGGGgtaactgtcttaattgtctgctggagcatgttaacaagggcaaccttgta Alignment from Spaln_nt2Genome TTGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGACCCCTCTCTCCCCAGTACGGATTCTTCCGAGCGTTCTCCCATGGCTGGAGATGGTGTCCCCTGGGGTGGGAGCGGTGTGGCTGACACTCCCATGAGCCCTTTACTGAAAGGGAGCCTCAGCCAGGAGCTAAGCAAGAGCTTTCTGACCCTGACCCGGCCTGACCGGGCCCTAGTGAGGACCAGTAGTCGGCGGGAACAATGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCGGAGGGGCTCAGGTGACCCCATGCCCCAGAAAGCTGGCTCTTCGGATTCCTGCTTCAGTGGCACTGACAGGGAGACTCTGAGCAGCTTCAAGAGTGAGAAGACTAACTCTACACACCTCGACAGTCCCCCTGGTGGGCATGC---TCCCGAGGGCAGCGACACAGACCCTCCTTCTGAGGCTGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGACACACTTCGTTCCTTTGACACAGTCATTGGAGCAGGGACACCACCGGGCCAAACGGAGCCGCTCCTGGTTGTGCGGCCCAAGGACTTGGCCCTGCTTCGGCCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCGTACCCCAAGACGGCCCTTGCTTGAGGGCTCAGGCTTCTTTGAAGATGAAGATACCAGTGAAGGTAGTGAGCTGAGTCCAGCATCCAGTCTCCGGTCTCAGCGCCGCTATAGCACTGATAGCTCCTCGTCTACTTCTTGCTACTCCCCCGAGAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCGGGCCCCTCATGGGGCCGAAGAAGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACCCAGCGGACGCCCAGTACTGCCAGTGCCAAAACTCATGCCCGTGTGTTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCGGGCTCCAAGGCTGAGCTGGAGGCCCAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGTGTTGCCTCCTGAAGCCCGGAGGGGACCCGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAGGAGGAAGGTGCTGTAGGGGGAG atttgtccttctgaattctatgcaactagccctgttcttgctttctacagTTGGAGATCTTCCCCAGACACCACCAGGGGTTGTTCCGGATCCTGCTCTTCCGAGTACAGATTCTTCAGAACGATCCCCAATGGCAGGGGATGGGGTCCCCTGGGGGGGGTGTGGAGTGGCTGACACACCTATGAGCCCTTTGCTGAAAGGGAGCCTCAGCCAAGAGCTAAGCAAGACCTTTCTTACCCTTACACAGCCTGATCAGGCACTAGTAAGGACAAGTAGTCGACGGGAACGATGTCGGGGAACTGGAGGCTACCAGCCCTCGGACCAGAGGGGCTCAGGTGACCCTATGCCCCAAAAAGCTGGATCCTCCGACTCCTGCTTCAGTGGTACAGAAAGGGAGACTCTAAGTTGCTTTAAAAGTGAGAAGACCAACTCTACACACCTTGACAGCCCACCCGGTGGGCATGCCCCTCCTGAGGGTAGTGACACAGACCCTCCTTCTGAAGTAGAGCTTCCTGCATCCCCAGATGCTGGGGTCCCCTCAGTTGATGCACTTCATTCATTTGACACCATCATTGGAGCAGGGACACCATCTGGCCAAACAGAACCACTTTTGGTGGTGCAACCTAAAGATTTGGCTCTACTTCCACCTAGTAAGCGGCAGCCCCCC---CGAGAACATTCCCCACCTGGTCATATCCCAAGACGATCTGTGCTTGAGGGATCAGGATTTTTTGAAGATGAAGATACCAGTGAAGGCGGTGAATTGACCCCAGCATCCAGTCTGCGGTGCAAGCTCCGCTATAGCACAGATAGTTCATCCTCCACTTCCTGCTACTCACCTGAAAGCTCCCAGGGTTCAGCAGGAGGTCCTCGGAAGCGGCAGGCGCCGCATGGAACCGAAGAGGGAACTGCTGTGCCCCCTAAACGACCCTATGGGACACAACGGAGCCCGAGTGCTGCTAGTGCAAAAACTCATGCCCGTGTGTTGAGCATGGATGGAGCAGGGGGTGATGTCCTACGGGCACTCCTTGCCGGTTCTAAAGCTGAGTTGGATGCTAAGCCAGGGATGGAGTTGGCTGCTGGTGAGCCAGCAGGGTCACCACCTGAGGCCCGAAGGGGACCTGCCACCAACCAGCCTGGCTGGCGGGGAGAATTGCAAGAGCAAGGAGCTGTAGGAGGGGgtaactgtcttaattgtctgctggagcatgttaacaagggcaaccttgta Alignment from Pairagon TTGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGACCCCTCTCTCCCCAGTACGGATTCTTCCGAGCGTTCTCCCATGGCTGGAGATGGTGTCCCCTGGGGTGGGAGCGGTGTGGCTGACACTCCCATGAGCCCTTTACTGAAAGGGAGCCTCAGCCAGGAGCTAAGCAAGAGCTTTCTGACCCTGACCCGGCCTGACCGGGCCCTAGTGAGGACCAGTAGTCGGCGGGAACAATGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCGGAGGGGCTCAGGTGACCCCATGCCCCAGAAAGCTGGCTCTTCGGATTCCTGCTTCAGTGGCACTGACAGGGAGACTCTGAGCAGCTTCAAGAGTGAGAAGACTAACTCTACACACCTCGACAGTCCCCCTGGTGGGCATG---CTCCCGAGGGCAGCGACACAGACCCTCCTTCTGAGGCTGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGACACACTTCGTTCCTTTGACACAGTCATTGGAGCAGGGACACCACCGGGCCAAACGGAGCCGCTCCTGGTTGTGCGGCCCAAGGACTTGGCCCTGCTTCGGCCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCGTACCCCAAGACGGCCCTTGCTTGAGGGCTCAGGCTTCTTTGAAGATGAAGATACCAGTGAAGGTAGTGAGCTGAGTCCAGCATCCAGTCTCCGGTCTCAGCGCCGCTATAGCACTGATAGCTCCTCGTCTACTTCTTGCTACTCCCCCGAGAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCGGGCCCCTCATGGGGCCGAAGAAGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACCCAGCGGACGCCCAGTACTGCCAGTGCCAAAACTCATGCCCGTGTGTTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCGGGCTCCAAGGCTGAGCTGGAGGCCCAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGTGTTGCCTCCTGAAGCCCGGAGGGGACCCGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAGGAGGAAGGTGCTGTAGGGGGAG atttgtccttctgaattctatgcaactagccctgttcttgctttctacagTTGGAGATCTTCCCCAGACACCACCAGGGGTTGTTCCGGATCCTGCTCTTCCGAGTACAGATTCTTCAGAACGATCCCCAATGGCAGGGGATGGGGTCCCCTGGGGGGGGTGTGGAGTGGCTGACACACCTATGAGCCCTTTGCTGAAAGGGAGCCTCAGCCAAGAGCTAAGCAAGACCTTTCTTACCCTTACACAGCCTGATCAGGCACTAGTAAGGACAAGTAGTCGACGGGAACGATGTCGGGGAACTGGAGGCTACCAGCCCTCGGACCAGAGGGGCTCAGGTGACCCTATGCCCCAAAAAGCTGGATCCTCCGACTCCTGCTTCAGTGGTACAGAAAGGGAGACTCTAAGTTGCTTTAAAAGTGAGAAGACCAACTCTACACACCTTGACAGCCCACCCGGTGGGCATGCCCCTCCTGAGGGTAGTGACACAGACCCTCCTTCTGAAGTAGAGCTTCCTGCATCCCCAGATGCTGGGGTCCCCTCAGTTGATGCACTTCATTCATTTGACACCATCATTGGAGCAGGGACACCATCTGGCCAAACAGAACCACTTTTGGTGGTGCAACCTAAAGATTTGGCTCTACTTCCACCTAGTAAGCGGCAGCCCCCC---CGAGAACATTCCCCACCTGGTCATATCCCAAGACGATCTGTGCTTGAGGGATCAGGATTTTTTGAAGATGAAGATACCAGTGAAGGCGGTGAATTGACCCCAGCATCCAGTCTGCGGTGCAAGCTCCGCTATAGCACAGATAGTTCATCCTCCACTTCCTGCTACTCACCTGAAAGCTCCCAGGGTTCAGCAGGAGGTCCTCGGAAGCGGCAGGCGCCGCATGGAACCGAAGAGGGAACTGCTGTGCCCCCTAAACGACCCTATGGGACACAACGGAGCCCGAGTGCTGCTAGTGCAAAAACTCATGCCCGTGTGTTGAGCATGGATGGAGCAGGGGGTGATGTCCTACGGGCACTCCTTGCCGGTTCTAAAGCTGAGTTGGATGCTAAGCCAGGGATGGAGTTGGCTGCTGGTGAGCCAGCAGGGTCACCACCTGAGGCCCGAAGGGGACCTGCCACCAACCAGCCTGGCTGGCGGGGAGAATTGCAAGAGCAAGGAGCTGTAGGAGGGGgtaactgtcttaattgtctgctggagcatgttaacaagggcaaccttgta Alignment from Exonerate_protein2genome TTGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGACCCCTCTCTCCCCAGTACGGATTCTTCCGAGCGTTCTCCCATGGCTGGAGATGGTGTCCCCTGGGGTGGGAGCGGTGTGGCTGACACTCCCATGAGCCCTTTACTGAAAGGGAGCCTCAGCCAGGAGCTAAGCAAGAGCTTTCTGACCCTGACCCGGCCTGACCGGGCCCTAGTGAGGACCAGTAGTCGGCGGGAACAATGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCGGAGGGGCTCAGGTGACCCCATGCCCCAGAAAGCTGGCTCTTCGGATTCCTGCTTCAGTGGCACTGACAGGGAGACTCTGAGCAGCTTCAAGAGTGAGAAGACTAACTCTACACACCTCGACAGTCCCCCTGGTGGGCATGCT---CCCGAGGGCAGCGACACAGACCCTCCTTCTGAGGCTGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGACACACTTCGTTCCTTTGACACAGTCATTGGAGCAGGGACACCACCGGGCCAAACGGAGCCGCTCCTGGTTGTGCGGCCCAAGGACTTGGCCCTGCTTCGGCCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCGTACCCCAAGACGGCCCTTGCTTGAGGGCTCAGGCTTCTTTGAAGATGAAGATACCAGTGAAGGTAGTGAGCTGAGTCCAGCATCCAGTCTCCGGTCTCAGCGCCGCTATAGCACTGATAGCTCCTCGTCTACTTCTTGCTACTCCCCCGAGAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCGGGCCCCTCATGGGGCCGAAGAAGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACCCAGCGGACGCCCAGTACTGCCAGTGCCAAAACTCATGCCCGTGTGTTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCGGGCTCCAAGGCTGAGCTGGAGGCCCAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGTGTTGCCTCCTGAAGCCCGGAGGGGACCCGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAGGAGGAAGGTGCTGTAGGGGGAG atttgtccttctgaattctatgcaactagccctgttcttgctttctacagTTGGAGATCTTCCCCAGACACCACCAGGGGTTGTTCCGGATCCTGCTCTTCCGAGTACAGATTCTTCAGAACGATCCCCAATGGCAGGGGATGGGGTCCCCTGGGGGGGGTGTGGAGTGGCTGACACACCTATGAGCCCTTTGCTGAAAGGGAGCCTCAGCCAAGAGCTAAGCAAGACCTTTCTTACCCTTACACAGCCTGATCAGGCACTAGTAAGGACAAGTAGTCGACGGGAACGATGTCGGGGAACTGGAGGCTACCAGCCCTCGGACCAGAGGGGCTCAGGTGACCCTATGCCCCAAAAAGCTGGATCCTCCGACTCCTGCTTCAGTGGTACAGAAAGGGAGACTCTAAGTTGCTTTAAAAGTGAGAAGACCAACTCTACACACCTTGACAGCCCACCCGGTGGGCATGCCCCTCCTGAGGGTAGTGACACAGACCCTCCTTCTGAAGTAGAGCTTCCTGCATCCCCAGATGCTGGGGTCCCCTCAGTTGATGCACTTCATTCATTTGACACCATCATTGGAGCAGGGACACCATCTGGCCAAACAGAACCACTTTTGGTGGTGCAACCTAAAGATTTGGCTCTACTTCCACCTAGTAAGCGGCAGCCCCCC---CGAGAACATTCCCCACCTGGTCATATCCCAAGACGATCTGTGCTTGAGGGATCAGGATTTTTTGAAGATGAAGATACCAGTGAAGGCGGTGAATTGACCCCAGCATCCAGTCTGCGGTGCAAGCTCCGCTATAGCACAGATAGTTCATCCTCCACTTCCTGCTACTCACCTGAAAGCTCCCAGGGTTCAGCAGGAGGTCCTCGGAAGCGGCAGGCGCCGCATGGAACCGAAGAGGGAACTGCTGTGCCCCCTAAACGACCCTATGGGACACAACGGAGCCCGAGTGCTGCTAGTGCAAAAACTCATGCCCGTGTGTTGAGCATGGATGGAGCAGGGGGTGATGTCCTACGGGCACTCCTTGCCGGTTCTAAAGCTGAGTTGGATGCTAAGCCAGGGATGGAGTTGGCTGCTGGTGAGCCAGCAGGGTCACCACCTGAGGCCCGAAGGGGACCTGCCACCAACCAGCCTGGCTGGCGGGGAGAATTGCAAGAGCAAGGAGCTGTAGGAGGGGgtaactgtcttaattgtctgctggagcatgttaacaagggcaaccttgta Alignment from Exonerate_coding2genome TTGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGACCCCTCTCTCCCCAGTACGGATTCTTCCGAGCGTTCTCCCATGGCTGGAGATGGTGTCCCCTGGGGTGGGAGCGGTGTGGCTGACACTCCCATGAGCCCTTTACTGAAAGGGAGCCTCAGCCAGGAGCTAAGCAAGAGCTTTCTGACCCTGACCCGGCCTGACCGGGCCCTAGTGAGGACCAGTAGTCGGCGGGAACAATGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCGGAGGGGCTCAGGTGACCCCATGCCCCAGAAAGCTGGCTCTTCGGATTCCTGCTTCAGTGGCACTGACAGGGAGACTCTGAGCAGCTTCAAGAGTGAGAAGACTAACTCTACACACCTCGACAGTCCCCCTGGTGGGCATGCT---CCCGAGGGCAGCGACACAGACCCTCCTTCTGAGGCTGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGACACACTTCGTTCCTTTGACACAGTCATTGGAGCAGGGACACCACCGGGCCAAACGGAGCCGCTCCTGGTTGTGCGGCCCAAGGACTTGGCCCTGCTTCGGCCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCGTACCCCAAGACGGCCCTTGCTTGAGGGCTCAGGCTTCTTTGAAGATGAAGATACCAGTGAAGGTAGTGAGCTGAGTCCAGCATCCAGTCTCCGGTCTCAGCGCCGCTATAGCACTGATAGCTCCTCGTCTACTTCTTGCTACTCCCCCGAGAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCGGGCCCCTCATGGGGCCGAAGAAGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACCCAGCGGACGCCCAGTACTGCCAGTGCCAAAACTCATGCCCGTGTGTTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCGGGCTCCAAGGCTGAGCTGGAGGCCCAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGTGTTGCCTCCTGAAGCCCGGAGGGGACCCGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAGGAGGAAGGTGCTGTAGGGGGAG atttgtccttctgaattctatgcaactagccctgttcttgctttctacagTTGGAGATCTTCCCCAGACACCACCAGGGGTTGTTCCGGATCCTGCTCTTCCGAGTACAGATTCTTCAGAACGATCCCCAATGGCAGGGGATGGGGTCCCCTGGGGGGGGTGTGGAGTGGCTGACACACCTATGAGCCCTTTGCTGAAAGGGAGCCTCAGCCAAGAGCTAAGCAAGACCTTTCTTACCCTTACACAGCCTGATCAGGCACTAGTAAGGACAAGTAGTCGACGGGAACGATGTCGGGGAACTGGAGGCTACCAGCCCTCGGACCAGAGGGGCTCAGGTGACCCTATGCCCCAAAAAGCTGGATCCTCCGACTCCTGCTTCAGTGGTACAGAAAGGGAGACTCTAAGTTGCTTTAAAAGTGAGAAGACCAACTCTACACACCTTGACAGCCCACCCGGTGGGCATGCCCCTCCTGAGGGTAGTGACACAGACCCTCCTTCTGAAGTAGAGCTTCCTGCATCCCCAGATGCTGGGGTCCCCTCAGTTGATGCACTTCATTCATTTGACACCATCATTGGAGCAGGGACACCATCTGGCCAAACAGAACCACTTTTGGTGGTGCAACCTAAAGATTTGGCTCTACTTCCACCTAGTAAGCGGCAGCCCCCC---CGAGAACATTCCCCACCTGGTCATATCCCAAGACGATCTGTGCTTGAGGGATCAGGATTTTTTGAAGATGAAGATACCAGTGAAGGCGGTGAATTGACCCCAGCATCCAGTCTGCGGTGCAAGCTCCGCTATAGCACAGATAGTTCATCCTCCACTTCCTGCTACTCACCTGAAAGCTCCCAGGGTTCAGCAGGAGGTCCTCGGAAGCGGCAGGCGCCGCATGGAACCGAAGAGGGAACTGCTGTGCCCCCTAAACGACCCTATGGGACACAACGGAGCCCGAGTGCTGCTAGTGCAAAAACTCATGCCCGTGTGTTGAGCATGGATGGAGCAGGGGGTGATGTCCTACGGGCACTCCTTGCCGGTTCTAAAGCTGAGTTGGATGCTAAGCCAGGGATGGAGTTGGCTGCTGGTGAGCCAGCAGGGTCACCACCTGAGGCCCGAAGGGGACCTGCCACCAACCAGCCTGGCTGGCGGGGAGAATTGCAAGAGCAAGGAGCTGTAGGAGGGGgtaactgtcttaattgtctgctggagcatgttaacaagggcaaccttgta Alignment from GeneWise TTGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGACCCCTCTCTCCCCAGTACGGATTCTTCCGAGCGTTCTCCCATGGCTGGAGATGGTGTCCCCTGGGGTGGGAGCGGTGTGGCTGACACTCCCATGAGCCCTTTACTGAAAGGGAGCCTCAGCCAGGAGCTAAGCAAGAGCTTTCTGACCCTGACCCGGCCTGACCGGGCCCTAGTGAGGACCAGTAGTCGGCGGGAACAATGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCGGAGGGGCTCAGGTGACCCCATGCCCCAGAAAGCTGGCTCTTCGGATTCCTGCTTCAGTGGCACTGACAGGGAGACTCTGAGCAGCTTCAAGAGTGAGAAGACTAACTCTACACACCTCGACAGTCCCCCTGGTGGGCATGCTCCC---GAGGGCAGCGACACAGACCCTCCTTCTGAGGCTGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGACACACTTCGTTCCTTTGACACAGTCATTGGAGCAGGGACACCACCGGGCCAAACGGAGCCGCTCCTGGTTGTGCGGCCCAAGGACTTGGCCCTGCTTCGGCCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCGTACCCCAAGACGGCCCTTGCTTGAGGGCTCAGGCTTCTTTGAAGATGAAGATACCAGTGAAGGTAGTGAGCTGAGTCCAGCATCCAGTCTCCGGTCTCAGCGCCGCTATAGCACTGATAGCTCCTCGTCTACTTCTTGCTACTCCCCCGAGAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCGGGCCCCTCATGGGGCCGAAGAAGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACCCAGCGGACGCCCAGTACTGCCAGTGCCAAAACTCATGCCCGTGTGTTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCGGGCTCCAAGGCTGAGCTGGAGGCCCAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGTGTTGCCTCCTGAAGCCCGGAGGGGACCCGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAGGAGGAAGGTGCTGTAGGGGGAG atttgtccttctgaattctatgcaactagccctgttcttgctttctacagTTGGAGATCTTCCCCAGACACCACCAGGGGTTGTTCCGGATCCTGCTCTTCCGAGTACAGATTCTTCAGAACGATCCCCAATGGCAGGGGATGGGGTCCCCTGGGGGGGGTGTGGAGTGGCTGACACACCTATGAGCCCTTTGCTGAAAGGGAGCCTCAGCCAAGAGCTAAGCAAGACCTTTCTTACCCTTACACAGCCTGATCAGGCACTAGTAAGGACAAGTAGTCGACGGGAACGATGTCGGGGAACTGGAGGCTACCAGCCCTCGGACCAGAGGGGCTCAGGTGACCCTATGCCCCAAAAAGCTGGATCCTCCGACTCCTGCTTCAGTGGTACAGAAAGGGAGACTCTAAGTTGCTTTAAAAGTGAGAAGACCAACTCTACACACCTTGACAGCCCACCCGGTGGGCATGCCCCTCCTGAGGGTAGTGACACAGACCCTCCTTCTGAAGTAGAGCTTCCTGCATCCCCAGATGCTGGGGTCCCCTCAGTTGATGCACTTCATTCATTTGACACCATCATTGGAGCAGGGACACCATCTGGCCAAACAGAACCACTTTTGGTGGTGCAACCTAAAGATTTGGCTCTACTTCCACCTAGTAAGCGGCAGCCCCCC---CGAGAACATTCCCCACCTGGTCATATCCCAAGACGATCTGTGCTTGAGGGATCAGGATTTTTTGAAGATGAAGATACCAGTGAAGGCGGTGAATTGACCCCAGCATCCAGTCTGCGGTGCAAGCTCCGCTATAGCACAGATAGTTCATCCTCCACTTCCTGCTACTCACCTGAAAGCTCCCAGGGTTCAGCAGGAGGTCCTCGGAAGCGGCAGGCGCCGCATGGAACCGAAGAGGGAACTGCTGTGCCCCCTAAACGACCCTATGGGACACAACGGAGCCCGAGTGCTGCTAGTGCAAAAACTCATGCCCGTGTGTTGAGCATGGATGGAGCAGGGGGTGATGTCCTACGGGCACTCCTTGCCGGTTCTAAAGCTGAGTTGGATGCTAAGCCAGGGATGGAGTTGGCTGCTGGTGAGCCAGCAGGGTCACCACCTGAGGCCCGAAGGGGACCTGCCACCAACCAGCCTGGCTGGCGGGGAGAATTGCAAGAGCAAGGAGCTGTAGGAGGGGgtaactgtcttaattgtctgctggagcatgttaacaagggcaaccttgta #### Pcnxl3_ID1191_2 --> 0 - 2 Original Alignment GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAag aatggaccataatttgtgaagggtttgaggtatcttccatttattttcagGTCCCACCCCCCAGTCTCATGGTGGCTGGAGTGTATTGCCTAGTGGTGGCTGTTATTCTTGCTACCATTAAGACTGTAAACTATCGCCTCCATGCCACATTTGACCAGGGTGAGATTGTGGAAAAACACAATTCCACCATGGGGGAGAAAGAAGAAGAAGCTGCTCAGGGGGAAAGCAGTCTCCCCaggtaagatgtaatcccaggctatgtcaaagtcagatgttgctatgaactta Alignment from CESAR GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAag aatggaccataatttgtgaagggtttgaggtatcttccatttattttcagGTCCCACCCCCCAGTCTCATGGTGGCTGGAGTGTATTGCCTAGTGGTGGCTGTTATTCTTGCTACCATTAAGACTGTAAACTATCGCCTCCATGCCACATTTGACCAGGGTGAGATTGTGGAAAAACACAATTCCACCATGGGGGAGAAAGAAGAAGAAGCTGCTCAGGGGGAAAGCAGTCTCCCCaggtaagatgtaatcccaggctatgtcaaagtcagatgttgctatgaactta Alignment from Spaln_aa2Genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG aatggaccataatttgtgaagggtttgaggtatcttccatttattttcagGTCCCACCCCCCAGTCTCATGGTGGCTGGAGTGTATTGCCTAGTGGTGGCTGTTATTCTTGCTACCATTAAGACTGTAAACTATCGCCTCCATGCCACATTTGACCAGGGTGAGATTGTGGAAAAACACAATTCCACCATGGGGGAGAAAGAAGAAGAAGCTGCTCAGGGGGAAAGCAGTCTCCCCAGgtaagatgtaatcccaggctatgtcaaagtcagatgttgctatgaactta Alignment from Spaln_nt2Genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG aatggaccataatttgtgaagggtttgaggtatcttccatttattttcagGTCCCACCCCCCAGTCTCATGGTGGCTGGAGTGTATTGCCTAGTGGTGGCTGTTATTCTTGCTACCATTAAGACTGTAAACTATCGCCTCCATGCCACATTTGACCAGGGTGAGATTGTGGAAAAACACAATTCCACCATGGGGGAGAAAGAAGAAGAAGCTGCTCAGGGGGAAAGCAGTCTCCCCAGgtaagatgtaatcccaggctatgtcaaagtcagatgttgctatgaactta Alignment from Pairagon GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG aatggaccataatttgtgaagggtttgaggtatcttccatttattttcagGTCCCACCCCCCAGTCTCATGGTGGCTGGAGTGTATTGCCTAGTGGTGGCTGTTATTCTTGCTACCATTAAGACTGTAAACTATCGCCTCCATGCCACATTTGACCAGGGTGAGATTGTGGAAAAACACAATTCCACCATGGGGGAGAAAGAAGAAGAAGCTGCTCAGGGGGAAAGCAGTCTCCCCAGgtaagatgtaatcccaggctatgtcaaagtcagatgttgctatgaactta Alignment from Exonerate_protein2genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG aatggaccataatttgtgaagggtttgaggtatcttccatttattttcagGTCCCACCCCCCAGTCTCATGGTGGCTGGAGTGTATTGCCTAGTGGTGGCTGTTATTCTTGCTACCATTAAGACTGTAAACTATCGCCTCCATGCCACATTTGACCAGGGTGAGATTGTGGAAAAACACAATTCCACCATGGGGGAGAAAGAAGAAGAAGCTGCTCAGGGGGAAAGCAGTCTCCCCAGgtaagatgtaatcccaggctatgtcaaagtcagatgttgctatgaactta Alignment from Exonerate_coding2genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG aatggaccataatttgtgaagggtttgaggtatcttccatttattttcagGTCCCACCCCCCAGTCTCATGGTGGCTGGAGTGTATTGCCTAGTGGTGGCTGTTATTCTTGCTACCATTAAGACTGTAAACTATCGCCTCCATGCCACATTTGACCAGGGTGAGATTGTGGAAAAACACAATTCCACCATGGGGGAGAAAGAAGAAGAAGCTGCTCAGGGGGAAAGCAGTCTCCCCAGgtaagatgtaatcccaggctatgtcaaagtcagatgttgctatgaactta Alignment from GeneWise GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG aatggaccataatttgtgaagggtttgaggtatcttccatttattttcagGTCCCACCCCCCAGTCTCATGGTGGCTGGAGTGTATTGCCTAGTGGTGGCTGTTATTCTTGCTACCATTAAGACTGTAAACTATCGCCTCCATGCCACATTTGACCAGGGTGAGATTGTGGAAAAACACAATTCCACCATGGGGGAGAAAGAAGAAGAAGCTGCTCAGGGGGAAAGCAGTCTCCCCAGgtaagatgtaatcccaggctatgtcaaagtcagatgttgctatgaactta #### Pcsk5_ID4231_36 --> 2 - 0 Original Alignment gaAAGGAGGCGTGGAGTTGCTTGTCCTGTGTGTGGAGCTACCACCTTCTGAAAGGAATCTGCATCCCAGAATGTATCGTAGGGGAATACAGAGAGGGAAAG gaatcctccctaactcctttctccagttcagctattgtttcctctaatagggAAGGAGGCATGGAGCTGCTTGCCATGTGTGTGGAGCTACCACCTTCTGGAAGGAATCTGCATTCCAGAATGTATTGTAGGGGAATACAGAGAGGGAAAGgtaggcagacttgggggtagtaggagtatttcaccctcactgggctccct Alignment from CESAR gaAAGGAGGCGTGGAGTTGCTTGTCCTGTGTGTGGAGCTACCACCTTCTGAAAGGAATCTGCATCCCAGAATGTATCGTAGGGGAATACAGAGAGGGAAAG gaatcctccctaactcctttctccagttcagctattgtttcctctaatagggAAGGAGGCATGGAGCTGCTTGCCATGTGTGTGGAGCTACCACCTTCTGGAAGGAATCTGCATTCCAGAATGTATTGTAGGGGAATACAGAGAGGGAAAGgtaggcagacttgggggtagtaggagtatttcaccctcactgggctccct Alignment from Spaln_aa2Genome AGCGGAAAGGAGGCGTGGAGTTGCTTGTCCTGTGTGTGGAGCTACCACCTTCTGAAAGGAATCTGCATCCCAGAATGTATCGTAGGGGAATACAGAGAGGGAAAG tcctccctaactcctttctccagttcagctattgtttcctctaata gGGAAGGAGGCATGGAGCTGCTTGCCATGTGTGTGGAGCTACCACCTTCTGGAAGGAATCTGCATTCCAGAATGTATTGTAGGGGAATACAGAGAGGGAAAGgtaggcagacttgggggtagtaggagtatttcaccctcactgggctccct Alignment from Spaln_nt2Genome --AAGGAGGCGTGGAGTTGCTTGTCCTGTGTGTGGAGCTACCACCTTCTGAAAGGAATCTGCATCCCAGAATGTATCGTAGGGGAATACAGAGAGGGAAAG gaatcctccctaactcctttctccagttcagctattgtttcctctaatagGGAAGGAGGCATGGAGCTGCTTGCCATGTGTGTGGAGCTACCACCTTCTGGAAGGAATCTGCATTCCAGAATGTATTGTAGGGGAATACAGAGAGGGAAAGgtaggcagacttgggggtagtaggagtatttcaccctcactgggctccct Alignment from Pairagon GCCACCCCACTTGTGACAAGTGCAGCGGAAAGGAGGCGTGGAGTTGCTTGTCCTGTGTGTGGAGCTACCACCTTCTGAAAGGAATCTGCATCCCAGAATGTATCGTAGGGGAATACAGAGAGGGAAAG gaatcctccctaactcctttctccagttcagctattgtttcctctaatag---------------------------GGAAGGAGGCATGGAGCTGCTTGCCATGTGTGTGGAGCTACCACCTTCTGGAAGGAATCTGCATTCCAGAATGTATTGTAGGGGAATACAGAGAGGGAAAGgtaggcagacttgggggtagtaggagtatttcaccctcactgggctccct Alignment from Exonerate_protein2genome GTGACAAGTGCAGCGGAAAGGAGGCGTGGAGTTGCTTGTCCTGTGTGTGGAGCTACCACCTTCTGAAAGGAATCTGCATCCCAGAATGTATCGTAGGGGAATACAGAGAGGGAAAGGGA gaatcctccctaactcctttctccagttcagctatTGTTTCCTCTAATAGGGAAGGAGGCATGGAGCTGCTTGCCATGTGTGTGGAGCTACCACCTTCTGGAAGGAATCTGCATTCCAGAATGTATTGTAGGGGAATACAGAGAGGGAAAG---gtaggcagacttgggggtagtaggagtatttcaccctcactgggctc Alignment from Exonerate_coding2genome GTGACAAGTGCAGCGGAAAGGAGGCGTGGAGTTGCTTGTCCTGTGTGTGGAGCTACCACCTTCTGAAAGGAATCTGCATCCCAGAATGTATCGTAGGGGAATACAGAGAGGGAAAGGGA gaatcctccctaactcctttctccagttcagctatTGTTTCCTCTAATAGGGAAGGAGGCATGGAGCTGCTTGCCATGTGTGTGGAGCTACCACCTTCTGGAAGGAATCTGCATTCCAGAATGTATTGTAGGGGAATACAGAGAGGGAAAG---gtaggcagacttgggggtagtaggagtatttcaccctcactgggctc Alignment from GeneWise GCGGAAAGGAGGCGTGGAGTTGCTTGTCCTGTGTGTGGAGCTACCACCTTCTGAAAGGAATCTGCATCCCAGAATGTATCGTAGGGGAATACAGAGAGGGAAAGGGA gaatcctccctaactcctttctccagttcagctattgtttcctctaatagGG---AAGGAGGCATGGAGCTGCTTGCCATGTGTGTGGAGCTACCACCTTCTGGAAGGAATCTGCATTCCAGAATGTATTGTAGGGGAATACAGAGAGGGA---AAGgtaggcagacttgggggtagtaggagtatttcaccctcactgggctccct #### Pcsk5_ID4234_33 --> 2 - 1 Original Alignment atTGCCCCGAGTCCTGCCTGATCTGCTCATCAGCTTGGACCTGCCTGGCCTGTCGGGAAGGCTTCACAGTAGTGCATGATGTCTGCACGGCACCCAAGGAGTGTGCAGCCGTCGAGTACTGGGATGAGGGCTCCCACAGGTGCCAGCCGTGTCACAAGAAATGCTCCCGCTGCTCAGGGCCTTCTGAGGACCAGTGCTATACCTGTCCCAGAGAGACTTTTCTTCTCa tagtcccatacctattgtacaatctgattgtgacctatgtttccttgtagacTGCCCAGGATCCAGCCTAATTTGTTCATCAACTTGGACTTGTCTCTCCTGTCGAGAAGGGTTCATAGTGGTGCATGATGTCTGCACCGCACTTAGAGAATGTGCAGCTGTTGAGTATTGGGATGAGGGTTCTCAAAGATGTCAACCATGCCATAAGAAGTGTTCTCAGTGCTCAGGACCTTCAGAGGACCAGTGCTATACTTGTCCCAGGCAGTCTTTTCTTCTGagtatcataatcctcactggaggttaacgattatccagctccggttgcaaa Alignment from CESAR atTGCCCCGAGTCCTGCCTGATCTGCTCATCAGCTTGGACCTGCCTGGCCTGTCGGGAAGGCTTCACAGTAGTGCATGATGTCTGCACGGCACCCAAGGAGTGTGCAGCCGTCGAGTACTGGGATGAGGGCTCCCACAGGTGCCAGCCGTGTCACAAGAAATGCTCCCGCTGCTCAGGGCCTTCTGAGGACCAGTGCTATACCTGTCCCAGAGAGACTTTTCTTCTCa tagtcccatacctattgtacaatctgattgtgacctatgtttccttgtagacTGCCCAGGATCCAGCCTAATTTGTTCATCAACTTGGACTTGTCTCTCCTGTCGAGAAGGGTTCATAGTGGTGCATGATGTCTGCACCGCACTTAGAGAATGTGCAGCTGTTGAGTATTGGGATGAGGGTTCTCAAAGATGTCAACCATGCCATAAGAAGTGTTCTCAGTGCTCAGGACCTTCAGAGGACCAGTGCTATACTTGTCCCAGGCAGTCTTTTCTTCTGagtatcataatcctcactggaggttaacgattatccagctccggttgcaaa Alignment from Spaln_aa2Genome ATTGCCCCGAGTCCTGCCTGATCTGCTCATCAGCTTGGACCTGCCTGGCCTGTCGGGAAGGCTTCACAGTAGTGCATGATGTCTGCACGGCACCCAAGGAGTGTGCAGCCGTCGAGTACTGGGATGAGGGCTCCCACAGGTGCCAGCCGTGTCACAAGAAATGCTCCCGCTGCTCAGGGCCTTCTGAGGACCAGTGCTATACCTGTCCCAGAGAGACTTTTCTTCTCA tagtcccatacctattgtacaatctgattgtgacctatgtttccttgtagACTGCCCAGGATCCAGCCTAATTTGTTCATCAACTTGGACTTGTCTCTCCTGTCGAGAAGGGTTCATAGTGGTGCATGATGTCTGCACCGCACTTAGAGAATGTGCAGCTGTTGAGTATTGGGATGAGGGTTCTCAAAGATGTCAACCATGCCATAAGAAGTGTTCTCAGTGCTCAGGACCTTCAGAGGACCAGTGCTATACTTGTCCCAGGCAGTCTTTTCTTCTGAgtatcataatcctcactggaggttaacgattatccagctccggttgcaaa Alignment from Spaln_nt2Genome ATTGCCCCGAGTCCTGCCTGATCTGCTCATCAGCTTGGACCTGCCTGGCCTGTCGGGAAGGCTTCACAGTAGTGCATGATGTCTGCACGGCACCCAAGGAGTGTGCAGCCGTCGAGTACTGGGATGAGGGCTCCCACAGGTGCCAGCCGTGTCACAAGAAATGCTCCCGCTGCTCAGGGCCTTCTGAGGACCAGTGCTATACCTGTCCCAGAGAGACTTTTCTTCTCA tagtcccatacctattgtacaatctgattgtgacctatgtttccttgtagACTGCCCAGGATCCAGCCTAATTTGTTCATCAACTTGGACTTGTCTCTCCTGTCGAGAAGGGTTCATAGTGGTGCATGATGTCTGCACCGCACTTAGAGAATGTGCAGCTGTTGAGTATTGGGATGAGGGTTCTCAAAGATGTCAACCATGCCATAAGAAGTGTTCTCAGTGCTCAGGACCTTCAGAGGACCAGTGCTATACTTGTCCCAGGCAGTCTTTTCTTCTGAgtatcataatcctcactggaggttaacgattatccagctccggttgcaaa Alignment from Pairagon ATTGCCCCGAGTCCTGCCTGATCTGCTCATCAGCTTGGACCTGCCTGGCCTGTCGGGAAGGCTTCACAGTAGTGCATGATGTCTGCACGGCACCCAAGGAGTGTGCAGCCGTCGAGTACTGGGATGAGGGCTCCCACAGGTGCCAGCCGTGTCACAAGAAATGCTCCCGCTGCTCAGGGCCTTCTGAGGACCAGTGCTATACCTGTCCCAGAGAGACTTTTCTTCTCA tagtcccatacctattgtacaatctgattgtgacctatgtttccttgtagACTGCCCAGGATCCAGCCTAATTTGTTCATCAACTTGGACTTGTCTCTCCTGTCGAGAAGGGTTCATAGTGGTGCATGATGTCTGCACCGCACTTAGAGAATGTGCAGCTGTTGAGTATTGGGATGAGGGTTCTCAAAGATGTCAACCATGCCATAAGAAGTGTTCTCAGTGCTCAGGACCTTCAGAGGACCAGTGCTATACTTGTCCCAGGCAGTCTTTTCTTCTGAgtatcataatcctcactggaggttaacgattatccagctccggttgcaaa Alignment from Exonerate_protein2genome ATTGCCCCGAGTCCTGCCTGATCTGCTCATCAGCTTGGACCTGCCTGGCCTGTCGGGAAGGCTTCACAGTAGTGCATGATGTCTGCACGGCACCCAAGGAGTGTGCAGCCGTCGAGTACTGGGATGAGGGCTCCCACAGGTGCCAGCCGTGTCACAAGAAATGCTCCCGCTGCTCAGGGCCTTCTGAGGACCAGTGCTATACCTGTCCCAGAGAGACTTTTCTTCTCA tagtcccatacctattgtacaatctgattgtgacctatgtttccttgtagACTGCCCAGGATCCAGCCTAATTTGTTCATCAACTTGGACTTGTCTCTCCTGTCGAGAAGGGTTCATAGTGGTGCATGATGTCTGCACCGCACTTAGAGAATGTGCAGCTGTTGAGTATTGGGATGAGGGTTCTCAAAGATGTCAACCATGCCATAAGAAGTGTTCTCAGTGCTCAGGACCTTCAGAGGACCAGTGCTATACTTGTCCCAGGCAGTCTTTTCTTCTGAgtatcataatcctcactggaggttaacgattatccagctccggttgcaaa Alignment from Exonerate_coding2genome ATTGCCCCGAGTCCTGCCTGATCTGCTCATCAGCTTGGACCTGCCTGGCCTGTCGGGAAGGCTTCACAGTAGTGCATGATGTCTGCACGGCACCCAAGGAGTGTGCAGCCGTCGAGTACTGGGATGAGGGCTCCCACAGGTGCCAGCCGTGTCACAAGAAATGCTCCCGCTGCTCAGGGCCTTCTGAGGACCAGTGCTATACCTGTCCCAGAGAGACTTTTCTTCTCA tagtcccatacctattgtacaatctgattgtgacctatgtttccttgtagACTGCCCAGGATCCAGCCTAATTTGTTCATCAACTTGGACTTGTCTCTCCTGTCGAGAAGGGTTCATAGTGGTGCATGATGTCTGCACCGCACTTAGAGAATGTGCAGCTGTTGAGTATTGGGATGAGGGTTCTCAAAGATGTCAACCATGCCATAAGAAGTGTTCTCAGTGCTCAGGACCTTCAGAGGACCAGTGCTATACTTGTCCCAGGCAGTCTTTTCTTCTGAgtatcataatcctcactggaggttaacgattatccagctccggttgcaaa Alignment from GeneWise ATTGCCCCGAGTCCTGCCTGATCTGCTCATCAGCTTGGACCTGCCTGGCCTGTCGGGAAGGCTTCACAGTAGTGCATGATGTCTGCACGGCACCCAAGGAGTGTGCAGCCGTCGAGTACTGGGATGAGGGCTCCCACAGGTGCCAGCCGTGTCACAAGAAATGCTCCCGCTGCTCAGGGCCTTCTGAGGACCAGTGCTATACCTGTCCCAGAGAGACTTTTCTTCTCA tagtcccatacctattgtacaatctgattgtgacctatgtttccttgtagACTGCCCAGGATCCAGCCTAATTTGTTCATCAACTTGGACTTGTCTCTCCTGTCGAGAAGGGTTCATAGTGGTGCATGATGTCTGCACCGCACTTAGAGAATGTGCAGCTGTTGAGTATTGGGATGAGGGTTCTCAAAGATGTCAACCATGCCATAAGAAGTGTTCTCAGTGCTCAGGACCTTCAGAGGACCAGTGCTATACTTGTCCCAGGCAGTCTTTTCTTCTGAgtatcataatcctcactggaggttaacgattatccagctccggttgcaaa #### Pcsk5_ID4243_26 --> 1 - 1 Original Alignment gTTTGAGCGGCATTGCTATAAAGCCTGTCCTGAGAAGACCTTCGGTGTGAAATGGGAATGCAGGGCCTGTGGTACTAACTGTGGCAGCTGCGACCAACATGAGTGCTACTGGTGTGAGGAGGGCTTCTTTCTCTCCg aatccctgcatttcaagcctttctcatagctgaatgttctatgccatcaggTTTGAGCGGCATTGTTCTAGAGTTTGCCCTGAAAGGACTTTTGGTGTAAAATGGGAATGCAGGGTTTGTGGGACTAACTGTGGCAGCTGTGACCAACATGAATGCTACTGGTGTGAGGAAGGCTTCTTCCTCTCAggtaagcctaccaacgggttaagaaaagcttctgagcatctacacacatgc Alignment from CESAR gTTTGAGCGGCATTGCTATAAAGCCTGTCCTGAGAAGACCTTCGGTGTGAAATGGGAATGCAGGGCCTGTGGTACTAACTGTGGCAGCTGCGACCAACATGAGTGCTACTGGTGTGAGGAGGGCTTCTTTCTCTCCg aatccctgcatttcaagcctttctcatagctgaatgttctatgccatcaggTTTGAGCGGCATTGTTCTAGAGTTTGCCCTGAAAGGACTTTTGGTGTAAAATGGGAATGCAGGGTTTGTGGGACTAACTGTGGCAGCTGTGACCAACATGAATGCTACTGGTGTGAGGAAGGCTTCTTCCTCTCAggtaagcctaccaacgggttaagaaaagcttctgagcatctacacacatgc Alignment from Spaln_aa2Genome GTTTGAGCGGCATTGCTATAAAGCCTGTCCTGAGAAGACCTTCGGTGTGAAATGGGAATGCAGGGCCTGTGGTACTAACTGTGGCAGCTGCGACCAACATGAGTGCTACTGGTGTGAGGAGGGCTTCTTTCTCTCCG aatccctgcatttcaagcctttctcatagctgaatgttctatgccatcagGTTTGAGCGGCATTGTTCTAGAGTTTGCCCTGAAAGGACTTTTGGTGTAAAATGGGAATGCAGGGTTTGTGGGACTAACTGTGGCAGCTGTGACCAACATGAATGCTACTGGTGTGAGGAAGGCTTCTTCCTCTCAGgtaagcctaccaacgggttaagaaaagcttctgagcatctacacacatgc Alignment from Spaln_nt2Genome GTTTGAGCGGCATTGCTATAAAGCCTGTCCTGAGAAGACCTTCGGTGTGAAATGGGAATGCAGGGCCTGTGGTACTAACTGTGGCAGCTGCGACCAACATGAGTGCTACTGGTGTGAGGAGGGCTTCTTTCTCTCCG aatccctgcatttcaagcctttctcatagctgaatgttctatgccatcagGTTTGAGCGGCATTGTTCTAGAGTTTGCCCTGAAAGGACTTTTGGTGTAAAATGGGAATGCAGGGTTTGTGGGACTAACTGTGGCAGCTGTGACCAACATGAATGCTACTGGTGTGAGGAAGGCTTCTTCCTCTCAGgtaagcctaccaacgggttaagaaaagcttctgagcatctacacacatgc Alignment from Pairagon GTTTGAGCGGCATTGCTATAAAGCCTGTCCTGAGAAGACCTTCGGTGTGAAATGGGAATGCAGGGCCTGTGGTACTAACTGTGGCAGCTGCGACCAACATGAGTGCTACTGGTGTGAGGAGGGCTTCTTTCTCTCCG aatccctgcatttcaagcctttctcatagctgaatgttctatgccatcagGTTTGAGCGGCATTGTTCTAGAGTTTGCCCTGAAAGGACTTTTGGTGTAAAATGGGAATGCAGGGTTTGTGGGACTAACTGTGGCAGCTGTGACCAACATGAATGCTACTGGTGTGAGGAAGGCTTCTTCCTCTCAGgtaagcctaccaacgggttaagaaaagcttctgagcatctacacacatgc Alignment from Exonerate_protein2genome GTTTGAGCGGCATTGCTATAAAGCCTGTCCTGAGAAGACCTTCGGTGTGAAATGGGAATGCAGGGCCTGTGGTACTAACTGTGGCAGCTGCGACCAACATGAGTGCTACTGGTGTGAGGAGGGCTTCTTTCTCTCCG aatccctgcatttcaagcctttctcatagctgaatgttctatgccatcagGTTTGAGCGGCATTGTTCTAGAGTTTGCCCTGAAAGGACTTTTGGTGTAAAATGGGAATGCAGGGTTTGTGGGACTAACTGTGGCAGCTGTGACCAACATGAATGCTACTGGTGTGAGGAAGGCTTCTTCCTCTCAGgtaagcctaccaacgggttaagaaaagcttctgagcatctacacacatgc Alignment from Exonerate_coding2genome GCCTGTCCTGAGAAGACCTTCGGTGTGAAA-TGGGAATGCAGGGCCTGTGGTACTAACTGTGGCAGCTGCGACCAACATGAGTGCTACTGGTGTGAGGAGGGCTTCTTTCTCTCCG aatccctgcatttcaagcctttctcatagctgaatgttctatgccatcaggtttgagcggcattgttctagAGTTTGCCCTGAAAGGACTTTTGGTGTAAAATGGGAATGCAGGGTTTGTGGGACTAACTGTGGCAGCTGTGACCAACATGAATGCTACTGGTGTGAGGAAGGCTTCTTCCTCTCAGgtaagcctaccaacgggttaagaaaagcttctgagcatctacacacatgc Alignment from GeneWise GTTTGAGCGGCATTGCTATAAAGCCTGTCCTGAGAAGACCTTCGGTGTGAAATGGGAATGCAGGGCCTGTGGTACTAACTGTGGCAGCTGCGACCAACATGAGTGCTACTGGTGTGAGGAGGGCTTCTTTCTCTCCG aatccctgcatttcaagcctttctcatagctgaatgttctatgccatcagGTTTGAGCGGCATTGTTCTAGAGTTTGCCCTGAAAGGACTTTTGGTGTAAAATGGGAATGCAGGGTTTGTGGGACTAACTGTGGCAGCTGTGACCAACATGAATGCTACTGGTGTGAGGAAGGCTTCTTCCTCTCAGgtaagcctaccaacgggttaagaaaagcttctgagcatctacacacatgc #### Pcsk5_ID4260_21 --> 2 - 2 Original Alignment gaGAATACATTGATGACCAAGGCCACTGCCAAACCTGTGAAGCCTCATGTGCCAAGTGCTGGGGACCAACTCAGGAAGACTGTATCAGCTGCCCCGTAACAag tgaccttgacacgtgatatatagtcaacaattactggttcttttttacaggaGAATACATTGATGATCAGGGTCACTGTCAAACCTGTGAGGCCTCATGTGCTAAGTGCTGGGGTCCAGCTCAGGAGGACTGTATCAGCTGCCCTGTAACTaagtatcccctctcctggaggtaatggatcaatcaccttggtgccctcatag Alignment from CESAR gaGAATACATTGATGACCAAGGCCACTGCCAAACCTGTGAAGCCTCATGTGCCAAGTGCTGGGGACCAACTCAGGAAGACTGTATCAGCTGCCCCGTAACAag tgaccttgacacgtgatatatagtcaacaattactggttcttttttacaggaGAATACATTGATGATCAGGGTCACTGTCAAACCTGTGAGGCCTCATGTGCTAAGTGCTGGGGTCCAGCTCAGGAGGACTGTATCAGCTGCCCTGTAACTaagtatcccctctcctggaggtaatggatcaatcaccttggtgccctcatag Alignment from Spaln_aa2Genome GAGAATACATTGATGACCAAGGCCACTGCCAAACCTGTGAAGCCTCATGTGCCAAGTGCTGGGGACCAACTCAGGAAGACTGTATCAGCTGCCCCGTAACAAG tgaccttgacacgtgatatatagtcaacaattactggttcttttttacagGAGAATACATTGATGATCAGGGTCACTGTCAAACCTGTGAGGCCTCATGTGCTAAGTGCTGGGGTCCAGCTCAGGAGGACTGTATCAGCTGCCCTGTAACTAAgtatcccctctcctggaggtaatggatcaatcaccttggtgccctcatag Alignment from Spaln_nt2Genome GAGAATACATTGATGACCAAGGCCACTGCCAAACCTGTGAAGCCTCATGTGCCAAGTGCTGGGGACCAACTCAGGAAGACTGTATCAGCTGCCCCGTAACAAG tgaccttgacacgtgatatatagtcaacaattactggttcttttttacagGAGAATACATTGATGATCAGGGTCACTGTCAAACCTGTGAGGCCTCATGTGCTAAGTGCTGGGGTCCAGCTCAGGAGGACTGTATCAGCTGCCCTGTAACTAAgtatcccctctcctggaggtaatggatcaatcaccttggtgccctcatag Alignment from Pairagon GAGAATACATTGATGACCAAGGCCACTGCCAAACCTGTGAAGCCTCATGTGCCAAGTGCTGGGGACCAACTCAGGAAGACTGTATCAGCTGCCCCGTAACAAG tgaccttgacacgtgatatatagtcaacaattactggttcttttttacagGAGAATACATTGATGATCAGGGTCACTGTCAAACCTGTGAGGCCTCATGTGCTAAGTGCTGGGGTCCAGCTCAGGAGGACTGTATCAGCTGCCCTGTAACTAAgtatcccctctcctggaggtaatggatcaatcaccttggtgccctcatag Alignment from Exonerate_protein2genome GAGAATACATTGATGACCAAGGCCACTGCCAAACCTGTGAAGCCTCATGTGCCAAGTGCTGGGGACCAACTCAGGAAGACTGTATCAGCTGCCCCGTAACAAG tgaccttgacacgtgatatatagtcaacaattactggttcttttttacagGAGAATACATTGATGATCAGGGTCACTGTCAAACCTGTGAGGCCTCATGTGCTAAGTGCTGGGGTCCAGCTCAGGAGGACTGTATCAGCTGCCCTGTAACTAAgtatcccctctcctggaggtaatggatcaatcaccttggtgccctcatag Alignment from Exonerate_coding2genome GAGAATACATTGATGACCAAGGCCACTGCCAAACCTGTGAAGCCTCATGTGCCAAGTGCTGGGGACCAACTCAGGAAGACTGTATCAGCTGCCCCGTAACAAG tgaccttgacacgtgatatatagtcaacaattactggttcttttttacagGAGAATACATTGATGATCAGGGTCACTGTCAAACCTGTGAGGCCTCATGTGCTAAGTGCTGGGGTCCAGCTCAGGAGGACTGTATCAGCTGCCCTGTAACTAAgtatcccctctcctggaggtaatggatcaatcaccttggtgccctcatag Alignment from GeneWise GAGAATACATTGATGACCAAGGCCACTGCCAAACCTGTGAAGCCTCATGTGCCAAGTGCTGGGGACCAACTCAGGAAGACTGTATCAGCTGCCCCGTAACAAG tgaccttgacacgtgatatatagtcaacaattactggttcttttttacagGAGAATACATTGATGATCAGGGTCACTGTCAAACCTGTGAGGCCTCATGTGCTAAGTGCTGGGGTCCAGCTCAGGAGGACTGTATCAGCTGCCCTGTAACTAAgtatcccctctcctggaggtaatggatcaatcaccttggtgccctcatag #### Pcsk5_ID4264_19 --> 2 - 2 Original Alignment ggGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGag ggggatgacatgtacaaactgattgcctgaatggaatgtctcctttgcagggGCTGGAGCAGATGGATTCATAAATTGCACTGAGGGGTATGTTATGGAAGAGGGAAAATGTGTTCAGAGTTGTAGTGTGAGTTACTACTTGGATCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAaggtcagtttatcaattgtactccagccctgacactaagtatgatttggttc Alignment from CESAR ggGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGag ggggatgacatgtacaaactgattgcctgaatggaatgtctcctttgcagggGCTGGAGCAGATGGATTCATAAATTGCACTGAGGGGTATGTTATGGAAGAGGGAAAATGTGTTCAGAGTTGTAGTGTGAGTTACTACTTGGATCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAaggtcagtttatcaattgtactccagccctgacactaagtatgatttggttc Alignment from Spaln_aa2Genome GGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG ggggatgacatgtacaaactgattgcctgaatggaatgtctcctttgcagGGGCTGGAGCAGATGGATTCATAAATTGCACTGAGGGGTATGTTATGGAAGAGGGAAAATGTGTTCAGAGTTGTAGTGTGAGTTACTACTTGGATCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtcagtttatcaattgtactccagccctgacactaagtatgatttggttc Alignment from Spaln_nt2Genome GGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG ggggatgacatgtacaaactgattgcctgaatggaatgtctcctttgcagGGGCTGGAGCAGATGGATTCATAAATTGCACTGAGGGGTATGTTATGGAAGAGGGAAAATGTGTTCAGAGTTGTAGTGTGAGTTACTACTTGGATCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtcagtttatcaattgtactccagccctgacactaagtatgatttggttc Alignment from Pairagon GGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG ggggatgacatgtacaaactgattgcctgaatggaatgtctcctttgcagGGGCTGGAGCAGATGGATTCATAAATTGCACTGAGGGGTATGTTATGGAAGAGGGAAAATGTGTTCAGAGTTGTAGTGTGAGTTACTACTTGGATCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtcagtttatcaattgtactccagccctgacactaagtatgatttggttc Alignment from Exonerate_protein2genome GCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG ggggatgacatgtacaaactgattgcctgaatggaatgtctcctttgcagggGCTGGAGCAGATGGATTCATAAATTGCACTGAGGGGTATGTTATGGAAGAGGGAAAATGTGTTCAGAGTTGTAGTGTGAGTTACTACTTGGATCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtcagtttatcaattgtactccagccctgacactaagtatgatttggttc Alignment from Exonerate_coding2genome GCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG ggggatgacatgtacaaactgattgcctgaatggaatgtctcctttgcagggGCTGGAGCAGATGGATTCATAAATTGCACTGAGGGGTATGTTATGGAAGAGGGAAAATGTGTTCAGAGTTGTAGTGTGAGTTACTACTTGGATCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtcagtttatcaattgtactccagccctgacactaagtatgatttggttc Alignment from GeneWise GGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG ggggatgacatgtacaaactgattgcctgaatggaatgtctcctttgcagGGGCTGGAGCAGATGGATTCATAAATTGCACTGAGGGGTATGTTATGGAAGAGGGAAAATGTGTTCAGAGTTGTAGTGTGAGTTACTACTTGGATCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtcagtttatcaattgtactccagccctgacactaagtatgatttggttc #### Pcsk5_ID4265_18 --> 1 - 1 Original Alignment tCTTCAGGGATCCCGCTGTTCGGTCACCTGCGAGGATGGACAGTTCTTC---AATGGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTg aacactgtcctaaacctaatctctgcatcccttccctccctcgcaaacagtCTGCAGGGATCCCATTGCTCAGTTACTTGTGAAGATGGTCAATTCTTCAATAATGGTCACGACTGCCAGCCATGCCATCATTTC---------CGCTCTggtaagcagcacattagtgaccccccatcagaatatgtcatcagccaagaa Alignment from CESAR tCTTCAGGGATCCCGCTGTTCGGTCACCTGCGAGGATGGACAGTTCTTC---AATGGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTg aacactgtcctaaacctaatctctgcatcccttccctccctcgcaaacagtCTGCAGGGATCCCATTGCTCAGTTACTTGTGAAGATGGTCAATTCTTCAATAATGGTCACGACTGCCAGCCATGCCATCATTTC---------CGCTCTggtaagcagcacattagtgaccccccatcagaatatgtcatcagccaagaa Alignment from Spaln_aa2Genome TCTTCAGGGATCCCGCTGTTCGGTCACCTGCGAGGATGGACAGTTCTTC---AATGGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTG aacactgtcctaaacctaatctctgcatcccttccctccctcgcaaacagTCTGCAGGGATCCCATTGCTCAGTTACTTGTGAAGATGGTCAATTCTTCAATAATGGTCACGACTGCCAGCCATGCCATCATTTC---------CGCTCTGgtaagcagcacattagtgaccccccatcagaatatgtcatcagccaagaa Alignment from Spaln_nt2Genome TCTTCAGGGATCCCGCTGTTCGGTCACCTGCGAGGATGGACAGTTCTTCAAT---GGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTG aacactgtcctaaacctaatctctgcatcccttccctccctcgcaaacagTCTGCAGGGATCCCATTGCTCAGTTACTTGTGAAGATGGTCAATTCTTCAATAATGGTCACGACTGCCAGCCATGCCATCATTTC---------CGCTCTGgtaagcagcacattagtgaccccccatcagaatatgtcatcagccaagaa Alignment from Pairagon TCTTCAGGGATCCCGCTGTTCGGTCACCTGCGAGGATGGACAGTTCTTC---AATGGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTG aacactgtcctaaacctaatctctgcatcccttccctccctcgcaaacagTCTGCAGGGATCCCATTGCTCAGTTACTTGTGAAGATGGTCAATTCTTCAATAATGGTCACGACTGCCAGCCATGCCATCATTTC---------CGCTCTGgtaagcagcacattagtgaccccccatcagaatatgtcatcagccaagaa Alignment from Exonerate_protein2genome TCTTCAGGGATCCCGCTGTTCGGTCACCTGCGAGGATGGACAGTTCTTC---AATGGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTG aacactgtcctaaacctaatctctgcatcccttccctccctcgcaaacagTCTGCAGGGATCCCATTGCTCAGTTACTTGTGAAGATGGTCAATTCTTCAATAATGGTCACGACTGCCAGCCATGCCATCATTTC---------CGCTCTGgtaagcagcacattagtgaccccccatcagaatatgtcatcagccaagaa Alignment from Exonerate_coding2genome TCTTCAGGGATCCCGCTGTTCGGTCACCTGCGAGGATGGACAGTTCTTC---AATGGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTG aacactgtcctaaacctaatctctgcatcccttccctccctcgcaaacagTCTGCAGGGATCCCATTGCTCAGTTACTTGTGAAGATGGTCAATTCTTCAATAATGGTCACGACTGCCAGCCATGCCATCATTTC---------CGCTCTGgtaagcagcacattagtgaccccccatcagaatatgtcatcagccaagaa Alignment from GeneWise TCTTCAGGGATCCCGCTGTTCGGTCACCTGCGAGGATGGACAGTTCTTCAAT---GGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTG aacactgtcctaaacctaatctctgcatcccttccctccctcgcaaacagTCTGCAGGGATCCCATTGCTCAGTTACTTGTGAAGATGGTCAATTCTTCAATAATGGTCACGACTGCCAGCCATGCCATCATTTCCGC---------TCTGgtaagcagcacattagtgaccccccatcagaatatgtcatcagccaagaa #### Pcsk5_ID4270_14 --> 2 - 1 Original Alignment gtAAATTGAAAGAATGGTCCTTAGTCCTCTATGGCACGTCCGTACAGCCATACTCCCCAACCAACGAGTTTCCCAAAGTGGAACGCTTCCGCTACAGCCGAGTGGAAGACCCCACAGATGACTACGGTGCTGAAGATTATGCAg gtatgggcctgtaatatgtaaagtaattacaatggtcctccctgtgacaggtAAGCTAAAAGAATGGTCATTAGTCCTCTATGGTACATCTGTTCAGCCCTACTCCCCAACCAATGAGTTTCCGAAAGTGGAACGCTTCCGCTACAGCCGAGTGGAAGATCCTACAGACGACTACGGTGCTGAGGACTACGCAggtaaggttggcagaaaaaattattgaggtgaaggttttatacgtaagtag Alignment from CESAR gtAAATTGAAAGAATGGTCCTTAGTCCTCTATGGCACGTCCGTACAGCCATACTCCCCAACCAACGAGTTTCCCAAAGTGGAACGCTTCCGCTACAGCCGAGTGGAAGACCCCACAGATGACTACGGTGCTGAAGATTATGCAg gtatgggcctgtaatatgtaaagtaattacaatggtcctccctgtgacaggtAAGCTAAAAGAATGGTCATTAGTCCTCTATGGTACATCTGTTCAGCCCTACTCCCCAACCAATGAGTTTCCGAAAGTGGAACGCTTCCGCTACAGCCGAGTGGAAGATCCTACAGACGACTACGGTGCTGAGGACTACGCAggtaaggttggcagaaaaaattattgaggtgaaggttttatacgtaagtag Alignment from Spaln_aa2Genome GTAAATTGAAAGAATGGTCCTTAGTCCTCTATGGCACGTCCGTACAGCCATACTCCCCAACCAACGAGTTTCCCAAAGTGGAACGCTTCCGCTACAGCCGAGTGGAAGACCCCACAGATGACTACGGTGCTGAAGATTATGCAG gtatgggcctgtaatatgtaaagtaattacaatggtcctccctgtgacagGTAAGCTAAAAGAATGGTCATTAGTCCTCTATGGTACATCTGTTCAGCCCTACTCCCCAACCAATGAGTTTCCGAAAGTGGAACGCTTCCGCTACAGCCGAGTGGAAGATCCTACAGACGACTACGGTGCTGAGGACTACGCAGgtaaggttggcagaaaaaattattgaggtgaaggttttatacgtaagtag Alignment from Spaln_nt2Genome GTAAATTGAAAGAATGGTCCTTAGTCCTCTATGGCACGTCCGTACAGCCATACTCCCCAACCAACGAGTTTCCCAAAGTGGAACGCTTCCGCTACAGCCGAGTGGAAGACCCCACAGATGACTACGGTGCTGAAGATTATGCAG gtatgggcctgtaatatgtaaagtaattacaatggtcctccctgtgacagGTAAGCTAAAAGAATGGTCATTAGTCCTCTATGGTACATCTGTTCAGCCCTACTCCCCAACCAATGAGTTTCCGAAAGTGGAACGCTTCCGCTACAGCCGAGTGGAAGATCCTACAGACGACTACGGTGCTGAGGACTACGCAGgtaaggttggcagaaaaaattattgaggtgaaggttttatacgtaagtag Alignment from Pairagon GTAAATTGAAAGAATGGTCCTTAGTCCTCTATGGCACGTCCGTACAGCCATACTCCCCAACCAACGAGTTTCCCAAAGTGGAACGCTTCCGCTACAGCCGAGTGGAAGACCCCACAGATGACTACGGTGCTGAAGATTATGCAG gtatgggcctgtaatatgtaaagtaattacaatggtcctccctgtgacagGTAAGCTAAAAGAATGGTCATTAGTCCTCTATGGTACATCTGTTCAGCCCTACTCCCCAACCAATGAGTTTCCGAAAGTGGAACGCTTCCGCTACAGCCGAGTGGAAGATCCTACAGACGACTACGGTGCTGAGGACTACGCAGgtaaggttggcagaaaaaattattgaggtgaaggttttatacgtaagtag Alignment from Exonerate_protein2genome GTAAATTGAAAGAATGGTCCTTAGTCCTCTATGGCACGTCCGTACAGCCATACTCCCCAACCAACGAGTTTCCCAAAGTGGAACGCTTCCGCTACAGCCGAGTGGAAGACCCCACAGATGACTACGGTGCTGAAGATTATGCAG gtatgggcctgtaatatgtaaagtaattacaatggtcctccctgtgacagGTAAGCTAAAAGAATGGTCATTAGTCCTCTATGGTACATCTGTTCAGCCCTACTCCCCAACCAATGAGTTTCCGAAAGTGGAACGCTTCCGCTACAGCCGAGTGGAAGATCCTACAGACGACTACGGTGCTGAGGACTACGCAGgtaaggttggcagaaaaaattattgaggtgaaggttttatacgtaagtag Alignment from Exonerate_coding2genome GTAAATTGAAAGAATGGTCCTTAGTCCTCTATGGCACGTCCGTACAGCCATACTCCCCAACCAACGAGTTTCCCAAAGTGGAACGCTTCCGCTACAGCCGAGTGGAAGACCCCACAGATGACTACGGTGCTGAAGATTATGCAG gtatgggcctgtaatatgtaaagtaattacaatggtcctccctgtgacagGTAAGCTAAAAGAATGGTCATTAGTCCTCTATGGTACATCTGTTCAGCCCTACTCCCCAACCAATGAGTTTCCGAAAGTGGAACGCTTCCGCTACAGCCGAGTGGAAGATCCTACAGACGACTACGGTGCTGAGGACTACGCAGgtaaggttggcagaaaaaattattgaggtgaaggttttatacgtaagtag Alignment from GeneWise GTAAATTGAAAGAATGGTCCTTAGTCCTCTATGGCACGTCCGTACAGCCATACTCCCCAACCAACGAGTTTCCCAAAGTGGAACGCTTCCGCTACAGCCGAGTGGAAGACCCCACAGATGACTACGGTGCTGAAGATTATGCAG gtatgggcctgtaatatgtaaagtaattacaatggtcctccctgtgacagGTAAGCTAAAAGAATGGTCATTAGTCCTCTATGGTACATCTGTTCAGCCCTACTCCCCAACCAATGAGTTTCCGAAAGTGGAACGCTTCCGCTACAGCCGAGTGGAAGATCCTACAGACGACTACGGTGCTGAGGACTACGCAGgtaaggttggcagaaaaaattattgaggtgaaggttttatacgtaagtag #### Pcsk5_ID4271_13 --> 1 - 1 Original Alignment gCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGGAGAACGGGCTGCTGGGGACTGGGTCCTCGAAGTTTATGATACGCCATCTCAGCTGAGGAACTTCAAGACTCCAg aggccccttgactcatggagggggtttccttacgtttctaccccctgcagaCTCTTTGATCATTCTATGGAGGGGTTTAAGAACTGGGAGTTCATGACAATCCATTGCTGGGCAGAACGAGCTGCAGGGGATTGGGTCCTT---GTTTACGGTACACTTTCTCAGCTGAGAAACTTTAAGACCCCAggtgagcaaccagttacatctaaaatcacaagtggcatttattaagtgagc Alignment from CESAR gCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGGAGAACGGGCTGCTGGGGACTGGGTCCTCGAAGTTTATGATACGCCATCTCAGCTGAGGAACTTCAAGACTCCAg aggccccttgactcatggagggggtttccttacgtttctaccccctgcagaCTCTTTGATCATTCTATGGAGGGGTTTAAGAACTGGGAGTTCATGACAATCCATTGCTGGGCAGAACGAGCTGCAGGGGATTGGGTCCTT---GTTTACGGTACACTTTCTCAGCTGAGAAACTTTAAGACCCCAggtgagcaaccagttacatctaaaatcacaagtggcatttattaagtgagc Alignment from Spaln_aa2Genome GCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGGAGAACGGGCTGCTGGGGACTGGGTCCTCGAAGTTTATGATACGCCATCTCAGCTGAGGAACTTCAAGACTCCAG aggccccttgactcatggagggggtttccttacgtttctaccccctgcagACTCTTTGATCATTCTATGGAGGGGTTTAAGAACTGGGAGTTCATGACAATCCATTGCTGGGCAGAACGAGCTGCAGGGGATTGGGTCCTT---GTTTACGGTACACTTTCTCAGCTGAGAAACTTTAAGACCCCAGgtgagcaaccagttacatctaaaatcacaagtggcatttattaagtgagc Alignment from Spaln_nt2Genome GCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGGAGAACGGGCTGCTGGGGACTGGGTCCTCGAAGTTTATGATACGCCATCTCAGCTGAGGAACTTCAAGACTCCAG aggccccttgactcatggagggggtttccttacgtttctaccccctgcagACTCTTTGATCATTCTATGGAGGGGTTTAAGAACTGGGAGTTCATGACAATCCATTGCTGGGCAGAACGAGCTGCAGGGGATTGGGTCCT---TGTTTACGGTACACTTTCTCAGCTGAGAAACTTTAAGACCCCAGgtgagcaaccagttacatctaaaatcacaagtggcatttattaagtgagc Alignment from Pairagon GCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGGAGAACGGGCTGCTGGGGACTGGGTCCTCGAAGTTTATGATACGCCATCTCAGCTGAGGAACTTCAAGACTCCAG aggccccttgactcatggagggggtttccttacgtttctaccccctgcagACTCTTTGATCATTCTATGGAGGGGTTTAAGAACTGGGAGTTCATGACAATCCATTGCTGGGCAGAACGAGCTGCAGGGGATTGGGTCCTT---GTTTACGGTACACTTTCTCAGCTGAGAAACTTTAAGACCCCAGgtgagcaaccagttacatctaaaatcacaagtggcatttattaagtgagc Alignment from Exonerate_protein2genome GCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGGAGAACGGGCTGCTGGGGACTGGGTCCTCGAAGTTTATGATACGCCATCTCAGCTGAGGAACTTCAAGACTCCAG aggccccttgactcatggagggggtttccttacgtttctaccccctgcagACTCTTTGATCATTCTATGGAGGGGTTTAAGAACTGGGAGTTCATGACAATCCATTGCTGGGCAGAACGAGCTGCAGGGGATTGGGTCCTT---GTTTACGGTACACTTTCTCAGCTGAGAAACTTTAAGACCCCAGgtgagcaaccagttacatctaaaatcacaagtggcatttattaagtgagc Alignment from Exonerate_coding2genome GCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGGAGAACGGGCTGCTGGGGACTGGGTCCTCGAAGTTTATGATACGCCATCTCAGCTGAGGAACTTCAAGACTCCAG aggccccttgactcatggagggggtttccttacgtttctaccccctgcagACTCTTTGATCATTCTATGGAGGGGTTTAAGAACTGGGAGTTCATGACAATCCATTGCTGGGCAGAACGAGCTGCAGGGGATTGGGTCCTT---GTTTACGGTACACTTTCTCAGCTGAGAAACTTTAAGACCCCAGgtgagcaaccagttacatctaaaatcacaagtggcatttattaagtgagc Alignment from GeneWise GCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGGAGAACGGGCTGCTGGGGACTGGGTCCTCGAAGTTTATGATACGCCATCTCAGCTGAGGAACTTCAAGACTCCAG aggccccttgactcatggagggggtttccttacgtttctaccccctgcagACTCTTTGATCATTCTATGGAGGGGTTTAAGAACTGGGAGTTCATGACAATCCATTGCTGGGCAGAACGAGCTGCAGGGGATTGGGTCCTT---GTTTACGGTACACTTTCTCAGCTGAGAAACTTTAAGACCCCAGgtgagcaaccagttacatctaaaatcacaagtggcatttattaagtgagc #### Pcsk5_ID4278_11 --> 2 - 2 Original Alignment tgAGCCATCTCTATGGATTTGGACTGATGGATGCCGAAGCCATGGTGATGGAAGCAGAGAAGTGGACAACTGTTCCTCAGCAGCACGTGTGTGTGGAAAGCACAGACCGACAAATCaa aaaccatacccaccattcacagctgtataagaccacactttctcttgcagtgAGTCATCTGTATGGATTTGGGCTGATGGATGCAGAAGCTATGGTAATGGAAGCAGAGAAATGGGCAAGTGTGCCTCAACAACATGTGTGTGTAGAAAGCACAGACAGAAAGATTaagtgagacttgctgccctagtgaaaacttaataagctgaaaaaacagtgta Alignment from CESAR tgAGCCATCTCTATGGATTTGGACTGATGGATGCCGAAGCCATGGTGATGGAAGCAGAGAAGTGGACAACTGTTCCTCAGCAGCACGTGTGTGTGGAAAGCACAGACCGACAAATCaa aaaccatacccaccattcacagctgtataagaccacactttctcttgcagtgAGTCATCTGTATGGATTTGGGCTGATGGATGCAGAAGCTATGGTAATGGAAGCAGAGAAATGGGCAAGTGTGCCTCAACAACATGTGTGTGTAGAAAGCACAGACAGAAAGATTaagtgagacttgctgccctagtgaaaacttaataagctgaaaaaacagtgta Alignment from Spaln_aa2Genome TGAGCCATCTCTATGGATTTGGACTGATGGATGCCGAAGCCATGGTGATGGAAGCAGAGAAGTGGACAACTGTTCCTCAGCAGCACGTGTGTGTGGAAAGCACAGACCGACAAATCAA aaaccatacccaccattcacagctgtataagaccacactttctcttgcagTGAGTCATCTGTATGGATTTGGGCTGATGGATGCAGAAGCTATGGTAATGGAAGCAGAGAAATGGGCAAGTGTGCCTCAACAACATGTGTGTGTAGAAAGCACAGACAGAAAGATTAAgtgagacttgctgccctagtgaaaacttaataagctgaaaaaacagtgta Alignment from Spaln_nt2Genome TGAGCCATCTCTATGGATTTGGACTGATGGATGCCGAAGCCATGGTGATGGAAGCAGAGAAGTGGACAACTGTTCCTCAGCAGCACGTGTGTGTGGAAAGCACAGACCGACAAATCAA aaaccatacccaccattcacagctgtataagaccacactttctcttgcagTGAGTCATCTGTATGGATTTGGGCTGATGGATGCAGAAGCTATGGTAATGGAAGCAGAGAAATGGGCAAGTGTGCCTCAACAACATGTGTGTGTAGAAAGCACAGACAGAAAGATTAAgtgagacttgctgccctagtgaaaacttaataagctgaaaaaacagtgta Alignment from Pairagon TGAGCCATCTCTATGGATTTGGACTGATGGATGCCGAAGCCATGGTGATGGAAGCAGAGAAGTGGACAACTGTTCCTCAGCAGCACGTGTGTGTGGAAAGCACAGACCGACAAATCAA aaaccatacccaccattcacagctgtataagaccacactttctcttgcagTGAGTCATCTGTATGGATTTGGGCTGATGGATGCAGAAGCTATGGTAATGGAAGCAGAGAAATGGGCAAGTGTGCCTCAACAACATGTGTGTGTAGAAAGCACAGACAGAAAGATTAAgtgagacttgctgccctagtgaaaacttaataagctgaaaaaacagtgta Alignment from Exonerate_protein2genome TGAGCCATCTCTATGGATTTGGACTGATGGATGCCGAAGCCATGGTGATGGAAGCAGAGAAGTGGACAACTGTTCCTCAGCAGCACGTGTGTGTGGAAAGCACAGACCGACAAATCAA aaaccatacccaccattcacagctgtataagaccacactttctcttgcagTGAGTCATCTGTATGGATTTGGGCTGATGGATGCAGAAGCTATGGTAATGGAAGCAGAGAAATGGGCAAGTGTGCCTCAACAACATGTGTGTGTAGAAAGCACAGACAGAAAGATTAAgtgagacttgctgccctagtgaaaacttaataagctgaaaaaacagtgta Alignment from Exonerate_coding2genome TGAGCCATCTCTATGGATTTGGACTGATGGATGCCGAAGCCATGGTGATGGAAGCAGAGAAGTGGACAACTGTTCCTCAGCAGCACGTGTGTGTGGAAAGCACAGACCGACAAATCAA aaaccatacccaccattcacagctgtataagaccacactttctcttgcagTGAGTCATCTGTATGGATTTGGGCTGATGGATGCAGAAGCTATGGTAATGGAAGCAGAGAAATGGGCAAGTGTGCCTCAACAACATGTGTGTGTAGAAAGCACAGACAGAAAGATTAAgtgagacttgctgccctagtgaaaacttaataagctgaaaaaacagtgta Alignment from GeneWise TGAGCCATCTCTATGGATTTGGACTGATGGATGCCGAAGCCATGGTGATGGAAGCAGAGAAGTGGACAACTGTTCCTCAGCAGCACGTGTGTGTGGAAAGCACAGACCGACAAATCAA aaaccatacccaccattcacagctgtataagaccacactttctcttgcagTGAGTCATCTGTATGGATTTGGGCTGATGGATGCAGAAGCTATGGTAATGGAAGCAGAGAAATGGGCAAGTGTGCCTCAACAACATGTGTGTGTAGAAAGCACAGACAGAAAGATTAAgtgagacttgctgccctagtgaaaacttaataagctgaaaaaacagtgta #### Pcx_ID556_6 --> 0 - 1 Original Alignment GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAg ggtggttgtattgaaaatgcctggctgcgaatatgattattttcatacagGAGCTAGAAAAGAATTATACCCGAGCCTACTCAGAAGCCTTGGCGGCTTTTGGGAACAGAGCCCTGTTTGTTGAAAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAggtcagaaaatagatggctgcaactgcccaatacttctgagagacccaata Alignment from CESAR GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAg ggtggttgtattgaaaatgcctggctgcgaatatgattattttcatacagGAGCTAGAAAAGAATTATACCCGAGCCTACTCAGAAGCCTTGGCGGCTTTTGGGAACAGAGCCCTGTTTGTTGAAAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAggtcagaaaatagatggctgcaactgcccaatacttctgagagacccaata Alignment from Spaln_aa2Genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG ggtggttgtattgaaaatgcctggctgcgaatatgattattttcatacagGAGCTAGAAAAGAATTATACCCGAGCCTACTCAGAAGCCTTGGCGGCTTTTGGGAACAGAGCCCTGTTTGTTGAAAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtcagaaaatagatggctgcaactgcccaatacttctgagagacccaata Alignment from Spaln_nt2Genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG ggtggttgtattgaaaatgcctggctgcgaatatgattattttcatacagGAGCTAGAAAAGAATTATACCCGAGCCTACTCAGAAGCCTTGGCGGCTTTTGGGAACAGAGCCCTGTTTGTTGAAAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtcagaaaatagatggctgcaactgcccaatacttctgagagacccaata Alignment from Pairagon GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG ggtggttgtattgaaaatgcctggctgcgaatatgattattttcatacagGAGCTAGAAAAGAATTATACCCGAGCCTACTCAGAAGCCTTGGCGGCTTTTGGGAACAGAGCCCTGTTTGTTGAAAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtcagaaaatagatggctgcaactgcccaatacttctgagagacccaata Alignment from Exonerate_protein2genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG ggtggttgtattgaaaatgcctggctgcgaatatgattattttcatacagGAGCTAGAAAAGAATTATACCCGAGCCTACTCAGAAGCCTTGGCGGCTTTTGGGAACAGAGCCCTGTTTGTTGAAAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtcagaaaatagatggctgcaactgcccaatacttctgagagacccaata Alignment from Exonerate_coding2genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG ggtggttgtattgaaaatgcctggctgcgaatatgattattttcatacagGAGCTAGAAAAGAATTATACCCGAGCCTACTCAGAAGCCTTGGCGGCTTTTGGGAACAGAGCCCTGTTTGTTGAAAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtcagaaaatagatggctgcaactgcccaatacttctgagagacccaata Alignment from GeneWise GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG ggtggttgtattgaaaatgcctggctgcgaatatgattattttcatacagGAGCTAGAAAAGAATTATACCCGAGCCTACTCAGAAGCCTTGGCGGCTTTTGGGAACAGAGCCCTGTTTGTTGAAAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtcagaaaatagatggctgcaactgcccaatacttctgagagacccaata #### Pcx_ID558_8 --> 0 - 2 Original Alignment GTAGGCTATGAGAACGCCGGCACTGTGGAGTTCCTGGTGGACAAGCACGGCAAGCACTACTTCATCGAGGTCAATTCCCGCCTGCAGGTGGAGCACACGGTCACCGAGGAGATCACAga cttacacaggcattaaacaatacaacagtcttttttttttttttgaccagGTTGGCTATGAGAATGCTGGTACTGTGAAATTCCTGGTTGATAAGCATGGTAGACATTACTTTATTGAGGTCAACTCTCAGTTGCAAGTGGAGCACACTACAACAGAAGGAATCACAgagtaggagcctggcaaggtcaacaaatgatggaggtggggcctaagaggcc Alignment from CESAR GTAGGCTATGAGAACGCCGGCACTGTGGAGTTCCTGGTGGACAAGCACGGCAAGCACTACTTCATCGAGGTCAATTCCCGCCTGCAGGTGGAGCACACGGTCACCGAGGAGATCACAga cttacacaggcattaaacaatacaacagtcttttttttttttttgaccagGTTGGCTATGAGAATGCTGGTACTGTGAAATTCCTGGTTGATAAGCATGGTAGACATTACTTTATTGAGGTCAACTCTCAGTTGCAAGTGGAGCACACTACAACAGAAGGAATCACAgagtaggagcctggcaaggtcaacaaatgatggaggtggggcctaagaggcc Alignment from Spaln_aa2Genome GTAGGCTATGAGAACGCCGGCACTGTGGAGTTCCTGGTGGACAAGCACGGCAAGCACTACTTCATCGAGGTCAATTCCCGCCTGCAGGTGGAGCACACGGTCACCGAGGAGATCACAGA cttacacaggcattaaacaatacaacagtcttttttttttttttgaccagGTTGGCTATGAGAATGCTGGTACTGTGAAATTCCTGGTTGATAAGCATGGTAGACATTACTTTATTGAGGTCAACTCTCAGTTGCAAGTGGAGCACACTACAACAGAAGGAATCACAGAgtaggagcctggcaaggtcaacaaatgatggaggtggggcctaagaggcc Alignment from Spaln_nt2Genome GTAGGCTATGAGAACGCCGGCACTGTGGAGTTCCTGGTGGACAAGCACGGCAAGCACTACTTCATCGAGGTCAATTCCCGCCTGCAGGTGGAGCACACGGTCACCGAGGAGATCACAGA cttacacaggcattaaacaatacaacagtcttttttttttttttgaccagGTTGGCTATGAGAATGCTGGTACTGTGAAATTCCTGGTTGATAAGCATGGTAGACATTACTTTATTGAGGTCAACTCTCAGTTGCAAGTGGAGCACACTACAACAGAAGGAATCACAGAgtaggagcctggcaaggtcaacaaatgatggaggtggggcctaagaggcc Alignment from Pairagon GTAGGCTATGAGAACGCCGGCACTGTGGAGTTCCTGGTGGACAAGCACGGCAAGCACTACTTCATCGAGGTCAATTCCCGCCTGCAGGTGGAGCACACGGTCACCGAGGAGATCACAGA cttacacaggcattaaacaatacaacagtcttttttttttttttgaccagGTTGGCTATGAGAATGCTGGTACTGTGAAATTCCTGGTTGATAAGCATGGTAGACATTACTTTATTGAGGTCAACTCTCAGTTGCAAGTGGAGCACACTACAACAGAAGGAATCACAGAgtaggagcctggcaaggtcaacaaatgatggaggtggggcctaagaggcc Alignment from Exonerate_protein2genome GTAGGCTATGAGAACGCCGGCACTGTGGAGTTCCTGGTGGACAAGCACGGCAAGCACTACTTCATCGAGGTCAATTCCCGCCTGCAGGTGGAGCACACGGTCACCGAGGAGATCACAGA cttacacaggcattaaacaatacaacagtcttttttttttttttgaccagGTTGGCTATGAGAATGCTGGTACTGTGAAATTCCTGGTTGATAAGCATGGTAGACATTACTTTATTGAGGTCAACTCTCAGTTGCAAGTGGAGCACACTACAACAGAAGGAATCACAGAgtaggagcctggcaaggtcaacaaatgatggaggtggggcctaagaggcc Alignment from Exonerate_coding2genome GTAGGCTATGAGAACGCCGGCACTGTGGAGTTCCTGGTGGACAAGCACGGCAAGCACTACTTCATCGAGGTCAATTCCCGCCTGCAGGTGGAGCACACGGTCACCGAGGAGATCACAGA cttacacaggcattaaacaatacaacagtcttttttttttttttgaccagGTTGGCTATGAGAATGCTGGTACTGTGAAATTCCTGGTTGATAAGCATGGTAGACATTACTTTATTGAGGTCAACTCTCAGTTGCAAGTGGAGCACACTACAACAGAAGGAATCACAGAgtaggagcctggcaaggtcaacaaatgatggaggtggggcctaagaggcc Alignment from GeneWise GTAGGCTATGAGAACGCCGGCACTGTGGAGTTCCTGGTGGACAAGCACGGCAAGCACTACTTCATCGAGGTCAATTCCCGCCTGCAGGTGGAGCACACGGTCACCGAGGAGATCACAGA cttacacaggcattaaacaatacaacagtcttttttttttttttgaccagGTTGGCTATGAGAATGCTGGTACTGTGAAATTCCTGGTTGATAAGCATGGTAGACATTACTTTATTGAGGTCAACTCTCAGTTGCAAGTGGAGCACACTACAACAGAAGGAATCACAGAgtaggagcctggcaaggtcaacaaatgatggaggtggggcctaagaggcc #### Pdcd11_ID10111_5 --> 0 - 1 Original Alignment CTGCTGACAGGCACAGTGTCAAGCCTGGAAGACCATGGCTACCTAGTGGACATTGGCGTTGGTGGGACCAGAGCTTTTCTGTCACTTAAGAAGGCACAAGAGTACATCCGGCAGAAGAACAAAg catgtcttctgtttgaaacatgcaaaagcatgttgctgccacaaatgaagCTCCTGACAGGAACAGTTTCTAGCCTTGAAGACCATGGCTACCTTGTGGGCATTGGTGTTGGCGCGACTAGAGCCTTTCTATTACTGAAGAAGGCACAAGAGTACACTCGACAGAAGAACAAAggtaagtcatcgtaaccttagttattgtgtttggggttagtagttcttatt Alignment from CESAR CTGCTGACAGGCACAGTGTCAAGCCTGGAAGACCATGGCTACCTAGTGGACATTGGCGTTGGTGGGACCAGAGCTTTTCTGTCACTTAAGAAGGCACAAGAGTACATCCGGCAGAAGAACAAAg catgtcttctgtttgaaacatgcaaaagcatgttgctgccacaaatgaagCTCCTGACAGGAACAGTTTCTAGCCTTGAAGACCATGGCTACCTTGTGGGCATTGGTGTTGGCGCGACTAGAGCCTTTCTATTACTGAAGAAGGCACAAGAGTACACTCGACAGAAGAACAAAggtaagtcatcgtaaccttagttattgtgtttggggttagtagttcttatt Alignment from Spaln_aa2Genome CTGCTGACAGGCACAGTGTCAAGCCTGGAAGACCATGGCTACCTAGTGGACATTGGCGTTGGTGGGACCAGAGCTTTTCTGTCACTTAAGAAGGCACAAGAGTACATCCGGCAGAAGAACAAAG catgtcttctgtttgaaacatgcaaaagcatgttgctgccacaaatgaagCTCCTGACAGGAACAGTTTCTAGCCTTGAAGACCATGGCTACCTTGTGGGCATTGGTGTTGGCGCGACTAGAGCCTTTCTATTACTGAAGAAGGCACAAGAGTACACTCGACAGAAGAACAAAGgtaagtcatcgtaaccttagttattgtgtttggggttagtagttcttatt Alignment from Spaln_nt2Genome CATGCTGCTGACAGGCACAGTGTCAAGCCTGGAAGACCATGGCTACCTAGTGGACATTGGCGTTGGTGGGACCAGAGCTTTTCTGTCACTTAAGAAGGCACAAGAGTACATCCGGCAGAAGAACAAAG catgtcttctgtttgaaacatgcaaaagcatgttgctgccacaaatgaag----CTCCTGACAGGAACAGTTTCTAGCCTTGAAGACCATGGCTACCTTGTGGGCATTGGTGTTGGCGCGACTAGAGCCTTTCTATTACTGAAGAAGGCACAAGAGTACACTCGACAGAAGAACAAAGgtaagtcatcgtaaccttagttattgtgtttggggttagtagttcttatt Alignment from Pairagon CTGCTGACAGGCACAGTGTCAAGCCTGGAAGACCATGGCTACCTAGTGGACATTGGCGTTGGTGGGACCAGAGCTTTTCTGTCACTTAAGAAGGCACAAGAGTACATCCGGCAGAAGAACAAAG catgtcttctgtttgaaacatgcaaaagcatgttgctgccacaaatgaagCTCCTGACAGGAACAGTTTCTAGCCTTGAAGACCATGGCTACCTTGTGGGCATTGGTGTTGGCGCGACTAGAGCCTTTCTATTACTGAAGAAGGCACAAGAGTACACTCGACAGAAGAACAAAGgtaagtcatcgtaaccttagttattgtgtttggggttagtagttcttatt Alignment from Exonerate_protein2genome GGCATGCTGCTGACAGGCACAGTGTCAAGCCTGGAAGACCATGGCTACCTAGTGGACATTGGCGTTGGTGGGACCAGAGCTTTTCTGTCACTTAAGAAGGCACAAGAGTACATCCGGCAGAAGAACAAAG catgtcttctgtttgaaacatgcaaaagcatgttgctgccacaaATGAAGCTCCTGACAGGAACAGTTTCTAGCCTTGAAGACCATGGCTACCTTGTGGGCATTGGTGTTGGCGCGACTAGAGCCTTTCTATTACTGAAGAAGGCACAAGAGTACACTCGACAGAAGAACAAAGgtaagtcatcgtaaccttagttattgtgtttggggttagtagttcttatt Alignment from Exonerate_coding2genome catgtcttctgtttgaaacatgcaaaagcatgttgctgccacaaatgaagctcctgacaggaacagtttctagccttgaagaccatggctaccttgtgggcattggtgttggcgcgactagagcctttctattactgaagaaggcacaagagtacactcgacagaagaacaaaggtaagtcatcgtaaccttagttattgtgtttggggttagtagttcttatt Alignment from GeneWise CTGCTGACAGGCACAGTGTCAAGCCTGGAAGACCATGGCTACCTAGTGGACATTGGCGTTGGTGGGACCAGAGCTTTTCTGTCACTTAAGAAGGCACAAGAGTACATCCGGCAGAAGAACAAAG catgtcttctgtttgaaacatgcaaaagcatgttgctgccacaaatgaagCTCCTGACAGGAACAGTTTCTAGCCTTGAAGACCATGGCTACCTTGTGGGCATTGGTGTTGGCGCGACTAGAGCCTTTCTATTACTGAAGAAGGCACAAGAGTACACTCGACAGAAGAACAAAGgtaagtcatcgtaaccttagttattgtgtttggggttagtagttcttatt #### Pdcd11_ID10114_8 --> 0 - 0 Original Alignment GTAAAAGCCTGCATCCTCTGCGTCCATCCTCGCACCAGAGTTGTGCGACTGAGCCTGCGCCCCATCTTCCTGCATCCTGGGCGTCCACTCACCCGCATCTCTTACCAGCAGCTAGGGGCTGTGCTAGATGATGTCCCTGTTCAGGGTTTTTTTAAGAATGCGGGGGCCATCTTCAGGCTGAAGGATGGGGTACTGGCCTACGCCCGG acagaatcacacacagtggtcagtctgacctcctgtctttttcctttcagGTGAAAACCTGCATCCTGTGCATTCATCCCCGCACAAGAGTAGTACAACTCAGCCTGTACCCCATATTCCTGCATCTTGGTCATCCACTCACACAAATCTCATATCAGGAGTTGGTGGCTGTCCTCGATGATGTCCCTGTCCAGGGTTTCTTCAAGAATGCTGGGGCTATCTTTAGGCTGAAGGATGGGGTTTTGGCATATGCCCGCgttaacaaggtattgattaacccagtcatcactatagatttgcacatcct Alignment from CESAR GTAAAAGCCTGCATCCTCTGCGTCCATCCTCGCACCAGAGTTGTGCGACTGAGCCTGCGCCCCATCTTCCTGCATCCTGGGCGTCCACTCACCCGCATCTCTTACCAGCAGCTAGGGGCTGTGCTAGATGATGTCCCTGTTCAGGGTTTTTTTAAGAATGCGGGGGCCATCTTCAGGCTGAAGGATGGGGTACTGGCCTACGCCCGG acagaatcacacacagtggtcagtctgacctcctgtctttttcctttcagGTGAAAACCTGCATCCTGTGCATTCATCCCCGCACAAGAGTAGTACAACTCAGCCTGTACCCCATATTCCTGCATCTTGGTCATCCACTCACACAAATCTCATATCAGGAGTTGGTGGCTGTCCTCGATGATGTCCCTGTCCAGGGTTTCTTCAAGAATGCTGGGGCTATCTTTAGGCTGAAGGATGGGGTTTTGGCATATGCCCGCgttaacaaggtattgattaacccagtcatcactatagatttgcacatcct Alignment from Spaln_aa2Genome GTAAAAGCCTGCATCCTCTGCGTCCATCCTCGCACCAGAGTTGTGCGACTGAGCCTGCGCCCCATCTTCCTGCATCCTGGGCGTCCACTCACCCGCATCTCTTACCAGCAGCTAGGGGCTGTGCTAGATGATGTCCCTGTTCAGGGTTTTTTTAAGAATGCGGGGGCCATCTTCAGGCTGAAGGATGGGGTACTGGCCTACGCCCGG acagaatcacacacagtggtcagtctgacctcctgtctttttcctttcagGTGAAAACCTGCATCCTGTGCATTCATCCCCGCACAAGAGTAGTACAACTCAGCCTGTACCCCATATTCCTGCATCTTGGTCATCCACTCACACAAATCTCATATCAGGAGTTGGTGGCTGTCCTCGATGATGTCCCTGTCCAGGGTTTCTTCAAGAATGCTGGGGCTATCTTTAGGCTGAAGGATGGGGTTTTGGCATATGCCCGCgttaacaaggtattgattaacccagtcatcactatagatttgcacatcct Alignment from Spaln_nt2Genome GTAAAAGCCTGCATCCTCTGCGTCCATCCTCGCACCAGAGTTGTGCGACTGAGCCTGCGCCCCATCTTCCTGCATCCTGGGCGTCCACTCACCCGCATCTCTTACCAGCAGCTAGGGGCTGTGCTAGATGATGTCCCTGTTCAGGGTTTTTTTAAGAATGCGGGGGCCATCTTCAGGCTGAAGGATGGGGTACTGGCCTACGCCCGG acagaatcacacacagtggtcagtctgacctcctgtctttttcctttcagGTGAAAACCTGCATCCTGTGCATTCATCCCCGCACAAGAGTAGTACAACTCAGCCTGTACCCCATATTCCTGCATCTTGGTCATCCACTCACACAAATCTCATATCAGGAGTTGGTGGCTGTCCTCGATGATGTCCCTGTCCAGGGTTTCTTCAAGAATGCTGGGGCTATCTTTAGGCTGAAGGATGGGGTTTTGGCATATGCCCGCgttaacaaggtattgattaacccagtcatcactatagatttgcacatcct Alignment from Pairagon GTAAAAGCCTGCATCCTCTGCGTCCATCCTCGCACCAGAGTTGTGCGACTGAGCCTGCGCCCCATCTTCCTGCATCCTGGGCGTCCACTCACCCGCATCTCTTACCAGCAGCTAGGGGCTGTGCTAGATGATGTCCCTGTTCAGGGTTTTTTTAAGAATGCGGGGGCCATCTTCAGGCTGAAGGATGGGGTACTGGCCTACGCCCGG acagaatcacacacagtggtcagtctgacctcctgtctttttcctttcagGTGAAAACCTGCATCCTGTGCATTCATCCCCGCACAAGAGTAGTACAACTCAGCCTGTACCCCATATTCCTGCATCTTGGTCATCCACTCACACAAATCTCATATCAGGAGTTGGTGGCTGTCCTCGATGATGTCCCTGTCCAGGGTTTCTTCAAGAATGCTGGGGCTATCTTTAGGCTGAAGGATGGGGTTTTGGCATATGCCCGCgttaacaaggtattgattaacccagtcatcactatagatttgcacatcct Alignment from Exonerate_protein2genome GTAAAAGCCTGCATCCTCTGCGTCCATCCTCGCACCAGAGTTGTGCGACTGAGCCTGCGCCCCATCTTCCTGCATCCTGGGCGTCCACTCACCCGCATCTCTTACCAGCAGCTAGGGGCTGTGCTAGATGATGTCCCTGTTCAGGGTTTTTTTAAGAATGCGGGGGCCATCTTCAGGCTGAAGGATGGGGTACTGGCCTACGCCCGG acagaatcacacacagtggtcagtctgacctcctgtctttttcctttcagGTGAAAACCTGCATCCTGTGCATTCATCCCCGCACAAGAGTAGTACAACTCAGCCTGTACCCCATATTCCTGCATCTTGGTCATCCACTCACACAAATCTCATATCAGGAGTTGGTGGCTGTCCTCGATGATGTCCCTGTCCAGGGTTTCTTCAAGAATGCTGGGGCTATCTTTAGGCTGAAGGATGGGGTTTTGGCATATGCCCGCgttaacaaggtattgattaacccagtcatcactatagatttgcacatcct Alignment from Exonerate_coding2genome acagaatcacacacagtggtcagtctgacctcctgtctttttcctttcaggtgaaaacctgcatcctgtgcattcatccccgcacaagagtagtacaactcagcctgtaccccatattcctgcatcttggtcatccactcacacaaatctcatatcaggagttggtggctgtcctcgatgatgtccctgtccagggtttcttcaagaatgctggggctatctttaggctgaaggatggggttttggcatatgcccgcgttaacaaggtattgattaacccagtcatcactatagatttgcacatcct Alignment from GeneWise GTAAAAGCCTGCATCCTCTGCGTCCATCCTCGCACCAGAGTTGTGCGACTGAGCCTGCGCCCCATCTTCCTGCATCCTGGGCGTCCACTCACCCGCATCTCTTACCAGCAGCTAGGGGCTGTGCTAGATGATGTCCCTGTTCAGGGTTTTTTTAAGAATGCGGGGGCCATCTTCAGGCTGAAGGATGGGGTACTGGCCTACGCCCGG acagaatcacacacagtggtcagtctgacctcctgtctttttcctttcagGTGAAAACCTGCATCCTGTGCATTCATCCCCGCACAAGAGTAGTACAACTCAGCCTGTACCCCATATTCCTGCATCTTGGTCATCCACTCACACAAATCTCATATCAGGAGTTGGTGGCTGTCCTCGATGATGTCCCTGTCCAGGGTTTCTTCAAGAATGCTGGGGCTATCTTTAGGCTGAAGGATGGGGTTTTGGCATATGCCCGCgttaacaaggtattgattaacccagtcatcactatagatttgcacatcct #### Pdcd11_ID10123_17 --> 2 - 1 Original Alignment acTCTGTATTGATCCAGACACTTGCTGACATGACCCCGGGGATGGTCCTTGATGCCGTGGTCCATGAGGTGTTAGAAGATGGTTCAGTGGTGTTCAGTAGTGATCCTGTGCCTGACCTGGTCCTGAGAGCCAGCAGATACCACCGGGCAg atttgtgtctgtgatgctgtcttttcgcatacagatggtttatgttttaggcTTTGTATTGGTCCAGACACTTGCTGACATGACTCCTAGTATGGTTGTTGATGCTGTTGTACAAGATGTGTTGGATGATGGCCTCGTAGTGTTCAGTAGTGATCCTGTGCCTGAGTTAGTTCTTAGAGCCAGTAATTACCACTGGTCAggtaagtttaatcactacatgagtggtatcgacttccgtccccctactctg Alignment from CESAR acTCTGTATTGATCCAGACACTTGCTGACATGACCCCGGGGATGGTCCTTGATGCCGTGGTCCATGAGGTGTTAGAAGATGGTTCAGTGGTGTTCAGTAGTGATCCTGTGCCTGACCTGGTCCTGAGAGCCAGCAGATACCACCGGGCAg atttgtgtctgtgatgctgtcttttcgcatacagatggtttatgttttaggcTTTGTATTGGTCCAGACACTTGCTGACATGACTCCTAGTATGGTTGTTGATGCTGTTGTACAAGATGTGTTGGATGATGGCCTCGTAGTGTTCAGTAGTGATCCTGTGCCTGAGTTAGTTCTTAGAGCCAGTAATTACCACTGGTCAggtaagtttaatcactacatgagtggtatcgacttccgtccccctactctg Alignment from Spaln_aa2Genome ACTCTGTATTGATCCAGACACTTGCTGACATGACCCCGGGGATGGTCCTTGATGCCGTGGTCCATGAGGTGTTAGAAGATGGTTCAGTGGTGTTCAGTAGTGATCCTGTGCCTGACCTGGTCCTGAGAGCCAGCAGATACCACCGGGCAG atttgtgtctgtgatgctgtcttttcgcatacagatggtttatgttttagGCTTTGTATTGGTCCAGACACTTGCTGACATGACTCCTAGTATGGTTGTTGATGCTGTTGTACAAGATGTGTTGGATGATGGCCTCGTAGTGTTCAGTAGTGATCCTGTGCCTGAGTTAGTTCTTAGAGCCAGTAATTACCACTGGTCAGgtaagtttaatcactacatgagtggtatcgacttccgtccccctactctg Alignment from Spaln_nt2Genome ACTCTGTATTGATCCAGACACTTGCTGACATGACCCCGGGGATGGTCCTTGATGCCGTGGTCCATGAGGTGTTAGAAGATGGTTCAGTGGTGTTCAGTAGTGATCCTGTGCCTGACCTGGTCCTGAGAGCCAGCAGATACCACCGGGCAG atttgtgtctgtgatgctgtcttttcgcatacagatggtttatgttttagGCTTTGTATTGGTCCAGACACTTGCTGACATGACTCCTAGTATGGTTGTTGATGCTGTTGTACAAGATGTGTTGGATGATGGCCTCGTAGTGTTCAGTAGTGATCCTGTGCCTGAGTTAGTTCTTAGAGCCAGTAATTACCACTGGTCAGgtaagtttaatcactacatgagtggtatcgacttccgtccccctactctg Alignment from Pairagon ACTCTGTATTGATCCAGACACTTGCTGACATGACCCCGGGGATGGTCCTTGATGCCGTGGTCCATGAGGTGTTAGAAGATGGTTCAGTGGTGTTCAGTAGTGATCCTGTGCCTGACCTGGTCCTGAGAGCCAGCAGATACCACCGGGCAG atttgtgtctgtgatgctgtcttttcgcatacagatggtttatgttttagGCTTTGTATTGGTCCAGACACTTGCTGACATGACTCCTAGTATGGTTGTTGATGCTGTTGTACAAGATGTGTTGGATGATGGCCTCGTAGTGTTCAGTAGTGATCCTGTGCCTGAGTTAGTTCTTAGAGCCAGTAATTACCACTGGTCAGgtaagtttaatcactacatgagtggtatcgacttccgtccccctactctg Alignment from Exonerate_protein2genome ACTCTGTATTGATCCAGACACTTGCTGACATGACCCCGGGGATGGTCCTTGATGCCGTGGTCCATGAGGTGTTAGAAGATGGTTCAGTGGTGTTCAGTAGTGATCCTGTGCCTGACCTGGTCCTGAGAGCCAGCAGATACCACCGGGCAG atttgtgtctgtgatgctgtcttttcgcatacagatggtttatgttttagGCTTTGTATTGGTCCAGACACTTGCTGACATGACTCCTAGTATGGTTGTTGATGCTGTTGTACAAGATGTGTTGGATGATGGCCTCGTAGTGTTCAGTAGTGATCCTGTGCCTGAGTTAGTTCTTAGAGCCAGTAATTACCACTGGTCAGgtaagtttaatcactacatgagtggtatcgacttccgtccccctactctg Alignment from Exonerate_coding2genome ACTCTGTATTGATCCAGACACTTGCTGACATGACCCCGGGGATGGTCCTTGATGCCGTGGTCCATGAGGTGTTAGAAGATGGTTCAGTGGTGTTCAGTAGTGATCCTGTGCCTGACCTGGTCCTGAGAGCCAGCAGATACCACCGGGCAG atttgtgtctgtgatgctgtcttttcgcatacagatggtttatgttttagGCTTTGTATTGGTCCAGACACTTGCTGACATGACTCCTAGTATGGTTGTTGATGCTGTTGTACAAGATGTGTTGGATGATGGCCTCGTAGTGTTCAGTAGTGATCCTGTGCCTGAGTTAGTTCTTAGAGCCAGTAATTACCACTGGTCAGgtaagtttaatcactacatgagtggtatcgacttccgtccccctactctg Alignment from GeneWise ACTCTGTATTGATCCAGACACTTGCTGACATGACCCCGGGGATGGTCCTTGATGCCGTGGTCCATGAGGTGTTAGAAGATGGTTCAGTGGTGTTCAGTAGTGATCCTGTGCCTGACCTGGTCCTGAGAGCCAGCAGATACCACCGGGCAG atttgtgtctgtgatgctgtcttttcgcatacagatggtttatgttttagGCTTTGTATTGGTCCAGACACTTGCTGACATGACTCCTAGTATGGTTGTTGATGCTGTTGTACAAGATGTGTTGGATGATGGCCTCGTAGTGTTCAGTAGTGATCCTGTGCCTGAGTTAGTTCTTAGAGCCAGTAATTACCACTGGTCAGgtaagtttaatcactacatgagtggtatcgacttccgtccccctactctg #### Pdcd11_ID10125_19 --> 0 - 2 Original Alignment CTGAGAAAAAGCAGTAGACACCAGGGAATCGTACAGCATCTGGAAGAGTCCTTTGCCGTGGCATCCTTGGTGGAGACTGGCCACCTTGTGGCTTTCTCTCTGATCTCTCACCTCAATGATACCTTCCACTTTGACTCTGAGAAGCTGCGTGTGGGGCAGGGTGTCTGCCTTACCCTCAAGACCACAGAACCGGGAGTGACCGGTCTGATTTTGGCTGTGGAAGGGCCAGCTTCTAAGAGGACCAGGATGCCAGTTCAGAGGGATTCAGAGACAGTTGATGACAAAGGAGAGGAGAAAGAGGAGGAGGAGGAGGAGGAGGAGAAGGAAGAAGAGAACTTGACTGTGAAGTCTAAGAAAAGGCATAGCCTGGCTATTGGGGACAAAGTCACTGGGACCATTAAGGCTGTGAAGGCCACACATGTTGTTGTAACCCTAGCTGATGGCTTTGTTGGCTGTATCCATGCCTCCCGCATCTTAGATGATGTCCCAGTGGGCACCTCGCCTACGACCACACTGAAAGCCGGGAAGAAAGTCACTGCGAGAGTGATCGGTGGGCGAGATGTGAAGACATCTaa tgctgcacagttgcctccttatgtgcactgtgtgtgtaccaactgtctagCTGAGAAAGAGTACCAGACACCAGGAAGTAGTACAGCATCTAGAGGAGTCTTTTGCTGTGGCATCTTTATTAGAAACTGGCCACCTTGTAGCTTTCTCTTTGATCTCTCACCTCAATGACACTTTCCACTTTGATTCGGAGAAGCTCCGTGTGGGGCGAGGTGTTTGCCTCACCCTCAAGTCTACAGAGCCAGGAGTAACAGGTCTGATTTCTGGTGTGGAAGGGCCAGCTTCCAAGAGGACCAGGATGCCAGTTCAGAGAGATTCCAAGACAGTTGATGACAAAGGAGAGGAAAAAGGGGAGGAGGATGATGAGGAAGAAAAGGAAGAGGAGAATTTGACTGTGAAGTTCAAGAAAAGGCACAGCCTTGCTATTGGGGACAAAGTCACAGGGGCCATTAGGGCTGTTAAGGCGACACATGTGGTTATAACACTTGCTGATGGTTTTGTGGGTTGCATACATGGTTCCCGCATCTTAGACGATGTCCCAGTGGGAAGCTCACCTACAACCACTCTGAAAGCTGGAAAGAAAGTGACAGCAAGAGTGATCGGTGGGCGGGATGTGAAGACATCAaagtgataggctttacttgataccactggaatctgggggtttcagaattatg Alignment from CESAR CTGAGAAAAAGCAGTAGACACCAGGGAATCGTACAGCATCTGGAAGAGTCCTTTGCCGTGGCATCCTTGGTGGAGACTGGCCACCTTGTGGCTTTCTCTCTGATCTCTCACCTCAATGATACCTTCCACTTTGACTCTGAGAAGCTGCGTGTGGGGCAGGGTGTCTGCCTTACCCTCAAGACCACAGAACCGGGAGTGACCGGTCTGATTTTGGCTGTGGAAGGGCCAGCTTCTAAGAGGACCAGGATGCCAGTTCAGAGGGATTCAGAGACAGTTGATGACAAAGGAGAGGAGAAAGAGGAGGAGGAGGAGGAGGAGGAGAAGGAAGAAGAGAACTTGACTGTGAAGTCTAAGAAAAGGCATAGCCTGGCTATTGGGGACAAAGTCACTGGGACCATTAAGGCTGTGAAGGCCACACATGTTGTTGTAACCCTAGCTGATGGCTTTGTTGGCTGTATCCATGCCTCCCGCATCTTAGATGATGTCCCAGTGGGCACCTCGCCTACGACCACACTGAAAGCCGGGAAGAAAGTCACTGCGAGAGTGATCGGTGGGCGAGATGTGAAGACATCTaa tgctgcacagttgcctccttatgtgcactgtgtgtgtaccaactgtctagCTGAGAAAGAGTACCAGACACCAGGAAGTAGTACAGCATCTAGAGGAGTCTTTTGCTGTGGCATCTTTATTAGAAACTGGCCACCTTGTAGCTTTCTCTTTGATCTCTCACCTCAATGACACTTTCCACTTTGATTCGGAGAAGCTCCGTGTGGGGCGAGGTGTTTGCCTCACCCTCAAGTCTACAGAGCCAGGAGTAACAGGTCTGATTTCTGGTGTGGAAGGGCCAGCTTCCAAGAGGACCAGGATGCCAGTTCAGAGAGATTCCAAGACAGTTGATGACAAAGGAGAGGAAAAAGGGGAGGAGGATGATGAGGAAGAAAAGGAAGAGGAGAATTTGACTGTGAAGTTCAAGAAAAGGCACAGCCTTGCTATTGGGGACAAAGTCACAGGGGCCATTAGGGCTGTTAAGGCGACACATGTGGTTATAACACTTGCTGATGGTTTTGTGGGTTGCATACATGGTTCCCGCATCTTAGACGATGTCCCAGTGGGAAGCTCACCTACAACCACTCTGAAAGCTGGAAAGAAAGTGACAGCAAGAGTGATCGGTGGGCGGGATGTGAAGACATCAaagtgataggctttacttgataccactggaatctgggggtttcagaattatg Alignment from Spaln_aa2Genome CTGAGAAAAAGCAGTAGACACCAGGGAATCGTACAGCATCTGGAAGAGTCCTTTGCCGTGGCATCCTTGGTGGAGACTGGCCACCTTGTGGCTTTCTCTCTGATCTCTCACCTCAATGATACCTTCCACTTTGACTCTGAGAAGCTGCGTGTGGGGCAGGGTGTCTGCCTTACCCTCAAGACCACAGAACCGGGAGTGACCGGTCTGATTTTGGCTGTGGAAGGGCCAGCTTCTAAGAGGACCAGGATGCCAGTTCAGAGGGATTCAGAGACAGTTGATGACAAAGGAGAGGAGAAAGAGGAGGAGGAGGAGGAGGAGGAGAAGGAAGAAGAGAACTTGACTGTGAAGTCTAAGAAAAGGCATAGCCTGGCTATTGGGGACAAAGTCACTGGGACCATTAAGGCTGTGAAGGCCACACATGTTGTTGTAACCCTAGCTGATGGCTTTGTTGGCTGTATCCATGCCTCCCGCATCTTAGATGATGTCCCAGTGGGCACCTCGCCTACGACCACACTGAAAGCCGGGAAGAAAGTCACTGCGAGAGTGATCGGTGGGCGAGATGTGAAGACATCTAA tgctgcacagttgcctccttatgtgcactgtgtgtgtaccaactgtctagCTGAGAAAGAGTACCAGACACCAGGAAGTAGTACAGCATCTAGAGGAGTCTTTTGCTGTGGCATCTTTATTAGAAACTGGCCACCTTGTAGCTTTCTCTTTGATCTCTCACCTCAATGACACTTTCCACTTTGATTCGGAGAAGCTCCGTGTGGGGCGAGGTGTTTGCCTCACCCTCAAGTCTACAGAGCCAGGAGTAACAGGTCTGATTTCTGGTGTGGAAGGGCCAGCTTCCAAGAGGACCAGGATGCCAGTTCAGAGAGATTCCAAGACAGTTGATGACAAAGGAGAGGAAAAAGGGGAGGAGGATGATGAGGAAGAAAAGGAAGAGGAGAATTTGACTGTGAAGTTCAAGAAAAGGCACAGCCTTGCTATTGGGGACAAAGTCACAGGGGCCATTAGGGCTGTTAAGGCGACACATGTGGTTATAACACTTGCTGATGGTTTTGTGGGTTGCATACATGGTTCCCGCATCTTAGACGATGTCCCAGTGGGAAGCTCACCTACAACCACTCTGAAAGCTGGAAAGAAAGTGACAGCAAGAGTGATCGGTGGGCGGGATGTGAAGACATCAAAgtgataggctttacttgataccactggaatctgggggtttcagaattatg Alignment from Spaln_nt2Genome CTGAGAAAAAGCAGTAGACACCAGGGAATCGTACAGCATCTGGAAGAGTCCTTTGCCGTGGCATCCTTGGTGGAGACTGGCCACCTTGTGGCTTTCTCTCTGATCTCTCACCTCAATGATACCTTCCACTTTGACTCTGAGAAGCTGCGTGTGGGGCAGGGTGTCTGCCTTACCCTCAAGACCACAGAACCGGGAGTGACCGGTCTGATTTTGGCTGTGGAAGGGCCAGCTTCTAAGAGGACCAGGATGCCAGTTCAGAGGGATTCAGAGACAGTTGATGACAAAGGAGAGGAGAAAGAGGAGGAGGAGGAGGAGGAGGAGAAGGAAGAAGAGAACTTGACTGTGAAGTCTAAGAAAAGGCATAGCCTGGCTATTGGGGACAAAGTCACTGGGACCATTAAGGCTGTGAAGGCCACACATGTTGTTGTAACCCTAGCTGATGGCTTTGTTGGCTGTATCCATGCCTCCCGCATCTTAGATGATGTCCCAGTGGGCACCTCGCCTACGACCACACTGAAAGCCGGGAAGAAAGTCACTGCGAGAGTGATCGGTGGGCGAGATGTGAAGACATCTAA tgctgcacagttgcctccttatgtgcactgtgtgtgtaccaactgtctagCTGAGAAAGAGTACCAGACACCAGGAAGTAGTACAGCATCTAGAGGAGTCTTTTGCTGTGGCATCTTTATTAGAAACTGGCCACCTTGTAGCTTTCTCTTTGATCTCTCACCTCAATGACACTTTCCACTTTGATTCGGAGAAGCTCCGTGTGGGGCGAGGTGTTTGCCTCACCCTCAAGTCTACAGAGCCAGGAGTAACAGGTCTGATTTCTGGTGTGGAAGGGCCAGCTTCCAAGAGGACCAGGATGCCAGTTCAGAGAGATTCCAAGACAGTTGATGACAAAGGAGAGGAAAAAGGGGAGGAGGATGATGAGGAAGAAAAGGAAGAGGAGAATTTGACTGTGAAGTTCAAGAAAAGGCACAGCCTTGCTATTGGGGACAAAGTCACAGGGGCCATTAGGGCTGTTAAGGCGACACATGTGGTTATAACACTTGCTGATGGTTTTGTGGGTTGCATACATGGTTCCCGCATCTTAGACGATGTCCCAGTGGGAAGCTCACCTACAACCACTCTGAAAGCTGGAAAGAAAGTGACAGCAAGAGTGATCGGTGGGCGGGATGTGAAGACATCAAAgtgataggctttacttgataccactggaatctgggggtttcagaattatg Alignment from Pairagon CTGAGAAAAAGCAGTAGACACCAGGGAATCGTACAGCATCTGGAAGAGTCCTTTGCCGTGGCATCCTTGGTGGAGACTGGCCACCTTGTGGCTTTCTCTCTGATCTCTCACCTCAATGATACCTTCCACTTTGACTCTGAGAAGCTGCGTGTGGGGCAGGGTGTCTGCCTTACCCTCAAGACCACAGAACCGGGAGTGACCGGTCTGATTTTGGCTGTGGAAGGGCCAGCTTCTAAGAGGACCAGGATGCCAGTTCAGAGGGATTCAGAGACAGTTGATGACAAAGGAGAGGAGAAAGAGGAGGAGGAGGAGGAGGAGGAGAAGGAAGAAGAGAACTTGACTGTGAAGTCTAAGAAAAGGCATAGCCTGGCTATTGGGGACAAAGTCACTGGGACCATTAAGGCTGTGAAGGCCACACATGTTGTTGTAACCCTAGCTGATGGCTTTGTTGGCTGTATCCATGCCTCCCGCATCTTAGATGATGTCCCAGTGGGCACCTCGCCTACGACCACACTGAAAGCCGGGAAGAAAGTCACTGCGAGAGTGATCGGTGGGCGAGATGTGAAGACATCTAA tgctgcacagttgcctccttatgtgcactgtgtgtgtaccaactgtctagCTGAGAAAGAGTACCAGACACCAGGAAGTAGTACAGCATCTAGAGGAGTCTTTTGCTGTGGCATCTTTATTAGAAACTGGCCACCTTGTAGCTTTCTCTTTGATCTCTCACCTCAATGACACTTTCCACTTTGATTCGGAGAAGCTCCGTGTGGGGCGAGGTGTTTGCCTCACCCTCAAGTCTACAGAGCCAGGAGTAACAGGTCTGATTTCTGGTGTGGAAGGGCCAGCTTCCAAGAGGACCAGGATGCCAGTTCAGAGAGATTCCAAGACAGTTGATGACAAAGGAGAGGAAAAAGGGGAGGAGGATGATGAGGAAGAAAAGGAAGAGGAGAATTTGACTGTGAAGTTCAAGAAAAGGCACAGCCTTGCTATTGGGGACAAAGTCACAGGGGCCATTAGGGCTGTTAAGGCGACACATGTGGTTATAACACTTGCTGATGGTTTTGTGGGTTGCATACATGGTTCCCGCATCTTAGACGATGTCCCAGTGGGAAGCTCACCTACAACCACTCTGAAAGCTGGAAAGAAAGTGACAGCAAGAGTGATCGGTGGGCGGGATGTGAAGACATCAAAgtgataggctttacttgataccactggaatctgggggtttcagaattatg Alignment from Exonerate_protein2genome CTGAGAAAAAGCAGTAGACACCAGGGAATCGTACAGCATCTGGAAGAGTCCTTTGCCGTGGCATCCTTGGTGGAGACTGGCCACCTTGTGGCTTTCTCTCTGATCTCTCACCTCAATGATACCTTCCACTTTGACTCTGAGAAGCTGCGTGTGGGGCAGGGTGTCTGCCTTACCCTCAAGACCACAGAACCGGGAGTGACCGGTCTGATTTTGGCTGTGGAAGGGCCAGCTTCTAAGAGGACCAGGATGCCAGTTCAGAGGGATTCAGAGACAGTTGATGACAAAGGAGAGGAGAAAGAGGAGGAGGAGGAGGAGGAGGAGAAGGAAGAAGAGAACTTGACTGTGAAGTCTAAGAAAAGGCATAGCCTGGCTATTGGGGACAAAGTCACTGGGACCATTAAGGCTGTGAAGGCCACACATGTTGTTGTAACCCTAGCTGATGGCTTTGTTGGCTGTATCCATGCCTCCCGCATCTTAGATGATGTCCCAGTGGGCACCTCGCCTACGACCACACTGAAAGCCGGGAAGAAAGTCACTGCGAGAGTGATCGGTGGGCGAGATGTGAAGACATCTAA tgctgcacagttgcctccttatgtgcactgtgtgtgtaccaactgtctagCTGAGAAAGAGTACCAGACACCAGGAAGTAGTACAGCATCTAGAGGAGTCTTTTGCTGTGGCATCTTTATTAGAAACTGGCCACCTTGTAGCTTTCTCTTTGATCTCTCACCTCAATGACACTTTCCACTTTGATTCGGAGAAGCTCCGTGTGGGGCGAGGTGTTTGCCTCACCCTCAAGTCTACAGAGCCAGGAGTAACAGGTCTGATTTCTGGTGTGGAAGGGCCAGCTTCCAAGAGGACCAGGATGCCAGTTCAGAGAGATTCCAAGACAGTTGATGACAAAGGAGAGGAAAAAGGGGAGGAGGATGATGAGGAAGAAAAGGAAGAGGAGAATTTGACTGTGAAGTTCAAGAAAAGGCACAGCCTTGCTATTGGGGACAAAGTCACAGGGGCCATTAGGGCTGTTAAGGCGACACATGTGGTTATAACACTTGCTGATGGTTTTGTGGGTTGCATACATGGTTCCCGCATCTTAGACGATGTCCCAGTGGGAAGCTCACCTACAACCACTCTGAAAGCTGGAAAGAAAGTGACAGCAAGAGTGATCGGTGGGCGGGATGTGAAGACATCAAAgtgataggctttacttgataccactggaatctgggggtttcagaattatg Alignment from Exonerate_coding2genome CTGAGAAAAAGCAGTAGACACCAGGGAATCGTACAGCATCTGGAAGAGTCCTTTGCCGTGGCATCCTTGGTGGAGACTGGCCACCTTGTGGCTTTCTCTCTGATCTCTCACCTCAATGATACCTTCCACTTTGACTCTGAGAAGCTGCGTGTGGGGCAGGGTGTCTGCCTTACCCTCAAGACCACAGAACCGGGAGTGACCGGTCTGATTTTGGCTGTGGAAGGGCCAGCTTCTAAGAGGACCAGGATGCCAGTTCAGAGGGATTCAGAGACAGTTGATGACAAAGGAGAGGAGAAAGAGGAGGAGGAGGAGGAGGAGGAGAAGGAAGAAGAGAACTTGACTGTGAAGTCTAAGAAAAGGCATAGCCTGGCTATTGGGGACAAAGTCACTGGGACCATTAAGGCTGTGAAGGCCACACATGTTGTTGTAACCCTAGCTGATGGCTTTGTTGGCTGTATCCATGCCTCCCGCATCTTAGATGATGTCCCAGTGGGCACCTCGCCTACGACCACACTGAAAGCCGGGAAGAAAGTCACTGCGAGAGTGATCGGTGGGCGAGATGTGAAGACATCTAA tgctgcacagttgcctccttatgtgcactgtgtgtgtaccaactgtctagCTGAGAAAGAGTACCAGACACCAGGAAGTAGTACAGCATCTAGAGGAGTCTTTTGCTGTGGCATCTTTATTAGAAACTGGCCACCTTGTAGCTTTCTCTTTGATCTCTCACCTCAATGACACTTTCCACTTTGATTCGGAGAAGCTCCGTGTGGGGCGAGGTGTTTGCCTCACCCTCAAGTCTACAGAGCCAGGAGTAACAGGTCTGATTTCTGGTGTGGAAGGGCCAGCTTCCAAGAGGACCAGGATGCCAGTTCAGAGAGATTCCAAGACAGTTGATGACAAAGGAGAGGAAAAAGGGGAGGAGGATGATGAGGAAGAAAAGGAAGAGGAGAATTTGACTGTGAAGTTCAAGAAAAGGCACAGCCTTGCTATTGGGGACAAAGTCACAGGGGCCATTAGGGCTGTTAAGGCGACACATGTGGTTATAACACTTGCTGATGGTTTTGTGGGTTGCATACATGGTTCCCGCATCTTAGACGATGTCCCAGTGGGAAGCTCACCTACAACCACTCTGAAAGCTGGAAAGAAAGTGACAGCAAGAGTGATCGGTGGGCGGGATGTGAAGACATCAAAgtgataggctttacttgataccactggaatctgggggtttcagaattatg Alignment from GeneWise CTGAGAAAAAGCAGTAGACACCAGGGAATCGTACAGCATCTGGAAGAGTCCTTTGCCGTGGCATCCTTGGTGGAGACTGGCCACCTTGTGGCTTTCTCTCTGATCTCTCACCTCAATGATACCTTCCACTTTGACTCTGAGAAGCTGCGTGTGGGGCAGGGTGTCTGCCTTACCCTCAAGACCACAGAACCGGGAGTGACCGGTCTGATTTTGGCTGTGGAAGGGCCAGCTTCTAAGAGGACCAGGATGCCAGTTCAGAGGGATTCAGAGACAGTTGATGACAAAGGAGAGGAGAAAGAGGAGGAGGAGGAGGAGGAGGAGAAGGAAGAAGAGAACTTGACTGTGAAGTCTAAGAAAAGGCATAGCCTGGCTATTGGGGACAAAGTCACTGGGACCATTAAGGCTGTGAAGGCCACACATGTTGTTGTAACCCTAGCTGATGGCTTTGTTGGCTGTATCCATGCCTCCCGCATCTTAGATGATGTCCCAGTGGGCACCTCGCCTACGACCACACTGAAAGCCGGGAAGAAAGTCACTGCGAGAGTGATCGGTGGGCGAGATGTGAAGACATCTAA tgctgcacagttgcctccttatgtgcactgtgtgtgtaccaactgtctagCTGAGAAAGAGTACCAGACACCAGGAAGTAGTACAGCATCTAGAGGAGTCTTTTGCTGTGGCATCTTTATTAGAAACTGGCCACCTTGTAGCTTTCTCTTTGATCTCTCACCTCAATGACACTTTCCACTTTGATTCGGAGAAGCTCCGTGTGGGGCGAGGTGTTTGCCTCACCCTCAAGTCTACAGAGCCAGGAGTAACAGGTCTGATTTCTGGTGTGGAAGGGCCAGCTTCCAAGAGGACCAGGATGCCAGTTCAGAGAGATTCCAAGACAGTTGATGACAAAGGAGAGGAAAAAGGGGAGGAGGATGATGAGGAAGAAAAGGAAGAGGAGAATTTGACTGTGAAGTTCAAGAAAAGGCACAGCCTTGCTATTGGGGACAAAGTCACAGGGGCCATTAGGGCTGTTAAGGCGACACATGTGGTTATAACACTTGCTGATGGTTTTGTGGGTTGCATACATGGTTCCCGCATCTTAGACGATGTCCCAGTGGGAAGCTCACCTACAACCACTCTGAAAGCTGGAAAGAAAGTGACAGCAAGAGTGATCGGTGGGCGGGATGTGAAGACATCAAAgtgataggctttacttgataccactggaatctgggggtttcagaattatg #### Pdcd11_ID10126_20 --> 1 - 2 Original Alignment gTTTCTCCCAATAAGTCACCCCAGATTTGTTCTGACCATCCTGGAGCTGAGTGTTCGGCCAag tgcatgtaggtatacactatttagtgataacagttctgcctgttccttagaTTTCTCCCAATTAGCCACCCCAGATTTGTATTGACCATCCTGGAGTTGAGTGTTCGTCCAaggtacatctttattcttgaggataagtcaacagctggggtcatctccagcc Alignment from CESAR gTTTCTCCCAATAAGTCACCCCAGATTTGTTCTGACCATCCTGGAGCTGAGTGTTCGGCCAag tgcatgtaggtatacactatttagtgataacagttctgcctgttccttagaTTTCTCCCAATTAGCCACCCCAGATTTGTATTGACCATCCTGGAGTTGAGTGTTCGTCCAaggtacatctttattcttgaggataagtcaacagctggggtcatctccagcc Alignment from Spaln_aa2Genome GTTTCTCCCAATAAGTCACCCCAGATTTGTTCTGACCATCCTGGAGCTGAGTGTTCGGCCAAG tgcatgtaggtatacactatttagtgataacagttctgcctgttccttagATTTCTCCCAATTAGCCACCCCAGATTTGTATTGACCATCCTGGAGTTGAGTGTTCGTCCAAGgtacatctttattcttgaggataagtcaacagctggggtcatctccagcc Alignment from Spaln_nt2Genome GTTTCTCCCAATAAGTCACCCCAGATTTGTTCTGACCATCCTGGAGCTGAGTGTTCGGCCAAG tgcatgtaggtatacactatttagtgataacagttctgcctgttccttagATTTCTCCCAATTAGCCACCCCAGATTTGTATTGACCATCCTGGAGTTGAGTGTTCGTCCAAGgtacatctttattcttgaggataagtcaacagctggggtcatctccagcc Alignment from Pairagon GTTTCTCCCAATAAGTCACCCCAGATTTGTTCTGACCATCCTGGAGCTGAGTGTTCGGCCAAG tgcatgtaggtatacactatttagtgataacagttctgcctgttccttagATTTCTCCCAATTAGCCACCCCAGATTTGTATTGACCATCCTGGAGTTGAGTGTTCGTCCAAGgtacatctttattcttgaggataagtcaacagctggggtcatctccagcc Alignment from Exonerate_protein2genome GTTTCTCCCAATAAGTCACCCCAGATTTGTTCTGACCATCCTGGAGCTGAGTGTTCGGCCAAG tgcatgtaggtatacactatttagtgataacagttctgcctgttccttagATTTCTCCCAATTAGCCACCCCAGATTTGTATTGACCATCCTGGAGTTGAGTGTTCGTCCAAGgtacatctttattcttgaggataagtcaacagctggggtcatctccagcc Alignment from Exonerate_coding2genome GTTTCTCCCAATAAGTCACCCCAGATTTGTTCTGACCATCCTGGAGCTGAGTGTTCGGCCAAG tgcatgtaggtatacactatttagtgataacagttctgcctgttccttagATTTCTCCCAATTAGCCACCCCAGATTTGTATTGACCATCCTGGAGTTGAGTGTTCGTCCAAGgtacatctttattcttgaggataagtcaacagctggggtcatctccagcc Alignment from GeneWise GTTTCTCCCAATAAGTCACCCCAGATTTGTTCTGACCATCCTGGAGCTGAGTGTTCGGCCAAG tgcatgtaggtatacactatttagtgataacagttctgcctgttccttagATTTCTCCCAATTAGCCACCCCAGATTTGTATTGACCATCCTGGAGTTGAGTGTTCGTCCAAGgtacatctttattcttgaggataagtcaacagctggggtcatctccagcc #### Pdcd11_ID10131_25 --> 1 - 2 Original Alignment aTGTTACATCCTGTCCACAGCACACCGTGTGCTGGCTTTGTCACTCCGGTCATCCag tggctcctccacatccacaacaaatttttgtttatttctcatttttgtagaGGTTATATTGTACCCACGGGACATCGTGCGCTAGCGCTTTTACTACGGGCATCTaggtaagcgttgtacactttatagaggggagagtcagtatatatgctgacgg Alignment from CESAR aTGTTACATCCTGTCCACAGCACACCGTGTGCTGGCTTTGTCACTCCGGTCATCCag tggctcctccacatccacaacaaatttttgtttatttctcatttttgtagaGGTTATATTGTACCCACGGGACATCGTGCGCTAGCGCTTTTACTACGGGCATCTaggtaagcgttgtacactttatagaggggagagtcagtatatatgctgacgg Alignment from Spaln_aa2Genome ATGTTACATCCTGTCCACAGCACACCGTGTGCTGGCTTTGTCACTCCGGTCATCCAG tggctcctccacatccacaacaaatttttgtttatttctcatttttgtagAGGTTATATTGTACCCACGGGACATCGTGCGCTAGCGCTTTTACTACGGGCATCTAGgtaagcgttgtacactttatagaggggagagtcagtatatatgctgacgg Alignment from Spaln_nt2Genome ATGTTACATCCTGTCCACAGCACACCGTGTGCTGGCTTTGTCACTCCGGTCATCCAG tggctcctccacatccacaacaaatttttgtttatttctcatttttgtagAGGTTATATTGTACCCACGGGACATCGTGCGCTAGCGCTTTTACTACGGGCATCTAGgtaagcgttgtacactttatagaggggagagtcagtatatatgctgacgg Alignment from Pairagon ATGTTACATCCTGTCCACAGCACACCGTGTGCTGGCTTTGTCACTCCGGTCATCCAG tggctcctccacatccacaacaaatttttgtttatttctcatttttgtagAGGTTATATTGTACCCACGGGACATCGTGCGCTAGCGCTTTTACTACGGGCATCTAGgtaagcgttgtacactttatagaggggagagtcagtatatatgctgacgg Alignment from Exonerate_protein2genome ATGTTACATCCTGTCCACAGCACACCGTGTGCTGGCTTTGTCACTCCGGTCATCCAG tggctcctccacatccacaacaaatttttgtttatttctcatttttgtagAGGTTATATTGTACCCACGGGACATCGTGCGCTAGCGCTTTTACTACGGGCATCTAGgtaagcgttgtacactttatagaggggagagtcagtatatatgctgacgg Alignment from Exonerate_coding2genome tggctcctccacatccacaacaaatttttgtttatttctcatttttgtagaggttatattgtacccacgggacatcgtgcgctagcgcttttactacgggcatctaggtaagcgttgtacactttatagaggggagagtcagtatatatgctgacgg Alignment from GeneWise ATGTTACATCCTGTCCACAGCACACCGTGTGCTGGCTTTGTCACTCCGGTCATCCAG tggctcctccacatccacaacaaatttttgtttatttctcatttttgtagAGGTTATATTGTACCCACGGGACATCGTGCGCTAGCGCTTTTACTACGGGCATCTAGgtaagcgttgtacactttatagaggggagagtcagtatatatgctgacgg #### Pdcd11_ID10139_33 --> 0 - 1 Original Alignment GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGG------GCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAc acaatgcaagtaatgttttaagaaagggtttgtttctttttttctcttagGAAGCTGGAGAGCTGTATAACCGCATGATCAAACGGTGCCAGGAGAAGGATGTGGTCTGTATCAAATATGGTTCCTTTGGTTTGGGAAGGAGCCAGGCGGGGGCTGGGGTGAGTCACTATGTCCTACAGCGAGCACCAGAGTGCTTGCCAGCCAAGGAAcgtatgttctcttgaaacaaccaagctttatggtctggcacctgatcccac Alignment from CESAR GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAG---GCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAc acaatgcaagtaatgttttaagaaagggtttgtttctttttttctcttagGAAGCTGGAGAGCTGTATAACCGCATGATCAAACGGTGC---CAGGAGAAGGATGTGGTCTGTATCAAATATGGTTCCTTTGGTTTGGGAAGGAGCCAGGCGGGGGCTGGGGTGAGTCACTATGTCCTACAGCGAGCACCAGAGTGCTTGCCAGCCAAGGAAcgtatgttctcttgaaacaaccaagctttatggtctggcacctgatcccac Alignment from Spaln_aa2Genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC acaatgcaagtaatgttttaagaaagggtttgtttctttttttctcttagGAAGCTGGAGAGCTGTATAACCGCATGATCAAACGGTGCCAGGAGAAGGATGTGGTCTGTATCAAATATGGTTCCTTTGGTTTGGGAAGGAGCCAGGCGGGGGCTGGGGTGAGTCACTATGTCCTACAGCGAGCACCAGAGTGCTTGCCAGCCAAGGAACgtatgttctcttgaaacaaccaagctttatggtctggcacctgatcccac Alignment from Spaln_nt2Genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC acaatgcaagtaatgttttaagaaagggtttgtttctttttttctcttagGAAGCTGGAGAGCTGTATAACCGCATGATCAAACGGTGCCAGGAGAAGGATGTGGTCTGTATCAAATATGGTTCCTTTGGTTTGGGAAGGAGCCAGGCGGGGGCTGGGGTGAGTCACTATGTCCTACAGCGAGCACCAGAGTGCTTGCCAGCCAAGGAACgtatgttctcttgaaacaaccaagctttatggtctggcacctgatcccac Alignment from Pairagon GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCT---GTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCA------GGCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC acaatgcaagtaatgttttaagaaagggtttgtttctttttttctcttagGAAGCTGGAGAGCTGTATAACCGCATGATCAAACGGT---GCCAGGAGAAGGATGTGGTCTGTATCAAATATGGTTCCTTTGGTTTGGGAAGGAGCCAGGCGGGGGCTGGGGTGAGTCACTATGTCCTACAGCGAGCACCAGAGTGCTTGCCAGCCAAGGAACgtatgttctcttgaaacaaccaagctttatggtctggcacctgatcccac Alignment from Exonerate_protein2genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC acaatgcaagtaatgttttaagaaagggtttgtttctttttttctcttagGAAGCTGGAGAGCTGTATAACCGCATGATCAAACGGTGCCAGGAGAAGGATGTGGTCTGTATCAAATATGGTTCCTTTGGTTTGGGAAGGAGCCAGGCGGGGGCTGGGGTGAGTCACTATGTCCTACAGCGAGCACCAGAGTGCTTGCCAGCCAAGGAACgtatgttctcttgaaacaaccaagctttatggtctggcacctgatcccac Alignment from Exonerate_coding2genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC acaatgcaagtaatgttttaagaaagggtttgtttctttttttctcttagGAAGCTGGAGAGCTGTATAACCGCATGATCAAACGGTGCCAGGAGAAGGATGTGGTCTGTATCAAATATGGTTCCTTTGGTTTGGGAAGGAGCCAGGCGGGGGCTGGGGTGAGTCACTATGTCCTACAGCGAGCACCAGAGTGCTTGCCAGCCAAGGAACgtatgttctcttgaaacaaccaagctttatggtctggcacctgatcccac Alignment from GeneWise GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC acaatgcaagtaatgttttaagaaagggtttgtttctttttttctcttagGAAGCTGGAGAGCTGTATAACCGCATGATCAAACGGTGCCAGGAGAAGGATGTGGTCTGTATCAAATATGGTTCCTTTGGTTTGGGAAGGAGCCAGGCGGGGGCTGGGGTGAGTCACTATGTCCTACAGCGAGCACCAGAGTGCTTGCCAGCCAAGGAACgtatgttctcttgaaacaaccaagctttatggtctggcacctgatcccac #### Pdcd4_ID11397_4 --> 0 - 0 Original Alignment GAGAACTGTGTTTATGAAACTGTAGTTTTGCCCCTGGATGAGACCGCATTTGAGAAGACTCTAACACCAATTATACAGGAATACTTTGAGCATGGAGATACAAATGAAGTTGCG cactagcgcaagcaatttatattctaaggcctttcctatctcgtgtgcagGAGAACTGTGTTTATGAAACTGTAGTTTTGCCCTTGGATGAGACCGCATTCGAGAAGACTCTAACACCAATTATACAGGAATATTTTGAGCATGGAGATACAAATGAGGTTGCAgtgagggccaagctgcaatacaggaggtgcagtgaaaccagagtgagaca Alignment from CESAR GAGAACTGTGTTTATGAAACTGTAGTTTTGCCCCTGGATGAGACCGCATTTGAGAAGACTCTAACACCAATTATACAGGAATACTTTGAGCATGGAGATACAAATGAAGTTGCG cactagcgcaagcaatttatattctaaggcctttcctatctcgtgtgcagGAGAACTGTGTTTATGAAACTGTAGTTTTGCCCTTGGATGAGACCGCATTCGAGAAGACTCTAACACCAATTATACAGGAATATTTTGAGCATGGAGATACAAATGAGGTTGCAgtgagggccaagctgcaatacaggaggtgcagtgaaaccagagtgagaca Alignment from Spaln_aa2Genome GAGAACTGTGTTTATGAAACTGTAGTTTTGCCCCTGGATGAGACCGCATTTGAGAAGACTCTAACACCAATTATACAGGAATACTTTGAGCATGGAGATACAAATGAAGTTGCG cactagcgcaagcaatttatattctaaggcctttcctatctcgtgtgcagGAGAACTGTGTTTATGAAACTGTAGTTTTGCCCTTGGATGAGACCGCATTCGAGAAGACTCTAACACCAATTATACAGGAATATTTTGAGCATGGAGATACAAATGAGGTTGCAgtgagggccaagctgcaatacaggaggtgcagtgaaaccagagtgagaca Alignment from Spaln_nt2Genome GAGAACTGTGTTTATGAAACTGTAGTTTTGCCCCTGGATGAGACCGCATTTGAGAAGACTCTAACACCAATTATACAGGAATACTTTGAGCATGGAGATACAAATGAAGTTGCG cactagcgcaagcaatttatattctaaggcctttcctatctcgtgtgcagGAGAACTGTGTTTATGAAACTGTAGTTTTGCCCTTGGATGAGACCGCATTCGAGAAGACTCTAACACCAATTATACAGGAATATTTTGAGCATGGAGATACAAATGAGGTTGCAgtgagggccaagctgcaatacaggaggtgcagtgaaaccagagtgagaca Alignment from Pairagon GAGAACTGTGTTTATGAAACTGTAGTTTTGCCCCTGGATGAGACCGCATTTGAGAAGACTCTAACACCAATTATACAGGAATACTTTGAGCATGGAGATACAAATGAAGTTGCG cactagcgcaagcaatttatattctaaggcctttcctatctcgtgtgcagGAGAACTGTGTTTATGAAACTGTAGTTTTGCCCTTGGATGAGACCGCATTCGAGAAGACTCTAACACCAATTATACAGGAATATTTTGAGCATGGAGATACAAATGAGGTTGCAgtgagggccaagctgcaatacaggaggtgcagtgaaaccagagtgagaca Alignment from Exonerate_protein2genome GAGAACTGTGTTTATGAAACTGTAGTTTTGCCCCTGGATGAGACCGCATTTGAGAAGACTCTAACACCAATTATACAGGAATACTTTGAGCATGGAGATACAAATGAAGTTGCG cactagcgcaagcaatttatattctaaggcctttcctatctcgtgtgcagGAGAACTGTGTTTATGAAACTGTAGTTTTGCCCTTGGATGAGACCGCATTCGAGAAGACTCTAACACCAATTATACAGGAATATTTTGAGCATGGAGATACAAATGAGGTTGCAgtgagggccaagctgcaatacaggaggtgcagtgaaaccagagtgagaca Alignment from Exonerate_coding2genome GAGAACTGTGTTTATGAAACTGTAGTTTTGCCCCTGGATGAGACCGCATTTGAGAAGACTCTAACACCAATTATACAGGAATACTTTGAGCATGGAGATACAAATGAAGTTGCG cactagcgcaagcaatttatattctaaggcctttcctatctcgtgtgcagGAGAACTGTGTTTATGAAACTGTAGTTTTGCCCTTGGATGAGACCGCATTCGAGAAGACTCTAACACCAATTATACAGGAATATTTTGAGCATGGAGATACAAATGAGGTTGCAgtgagggccaagctgcaatacaggaggtgcagtgaaaccagagtgagaca Alignment from GeneWise GAGAACTGTGTTTATGAAACTGTAGTTTTGCCCCTGGATGAGACCGCATTTGAGAAGACTCTAACACCAATTATACAGGAATACTTTGAGCATGGAGATACAAATGAAGTTGCG cactagcgcaagcaatttatattctaaggcctttcctatctcgtgtgcagGAGAACTGTGTTTATGAAACTGTAGTTTTGCCCTTGGATGAGACCGCATTCGAGAAGACTCTAACACCAATTATACAGGAATATTTTGAGCATGGAGATACAAATGAGGTTGCAgtgagggccaagctgcaatacaggaggtgcagtgaaaccagagtgagaca #### Pdcd4_ID11402_9 --> 0 - 0 Original Alignment GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA caatatatgctaaccttatattttgtgaccctttgtgttccatactgcagGCCATTGTGATGGTGTTAGAGTCAAGTGGGGAGAGTGCATTCAAGATGATCTTAGATTTACTTAAGTCTCTGTGGAAGTCTTCTACAATTACTATAGACCAAATGAAACGAgtaacaacagagagataaggatcttgcacgatttcctgcatggctctatt Alignment from CESAR GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA caatatatgctaaccttatattttgtgaccctttgtgttccatactgcagGCCATTGTGATGGTGTTAGAGTCAAGTGGGGAGAGTGCATTCAAGATGATCTTAGATTTACTTAAGTCTCTGTGGAAGTCTTCTACAATTACTATAGACCAAATGAAACGAgtaacaacagagagataaggatcttgcacgatttcctgcatggctctatt Alignment from Spaln_aa2Genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA caatatatgctaaccttatattttgtgaccctttgtgttccatactgcagGCCATTGTGATGGTGTTAGAGTCAAGTGGGGAGAGTGCATTCAAGATGATCTTAGATTTACTTAAGTCTCTGTGGAAGTCTTCTACAATTACTATAGACCAAATGAAACGAgtaacaacagagagataaggatcttgcacgatttcctgcatggctctatt Alignment from Spaln_nt2Genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA caatatatgctaaccttatattttgtgaccctttgtgttccatactgcagGCCATTGTGATGGTGTTAGAGTCAAGTGGGGAGAGTGCATTCAAGATGATCTTAGATTTACTTAAGTCTCTGTGGAAGTCTTCTACAATTACTATAGACCAAATGAAACGAgtaacaacagagagataaggatcttgcacgatttcctgcatggctctatt Alignment from Pairagon GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA caatatatgctaaccttatattttgtgaccctttgtgttccatactgcagGCCATTGTGATGGTGTTAGAGTCAAGTGGGGAGAGTGCATTCAAGATGATCTTAGATTTACTTAAGTCTCTGTGGAAGTCTTCTACAATTACTATAGACCAAATGAAACGAgtaacaacagagagataaggatcttgcacgatttcctgcatggctctatt Alignment from Exonerate_protein2genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA caatatatgctaaccttatattttgtgaccctttgtgttccatactgcagGCCATTGTGATGGTGTTAGAGTCAAGTGGGGAGAGTGCATTCAAGATGATCTTAGATTTACTTAAGTCTCTGTGGAAGTCTTCTACAATTACTATAGACCAAATGAAACGAgtaacaacagagagataaggatcttgcacgatttcctgcatggctctatt Alignment from Exonerate_coding2genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA caatatatgctaaccttatattttgtgaccctttgtgttccatactgcagGCCATTGTGATGGTGTTAGAGTCAAGTGGGGAGAGTGCATTCAAGATGATCTTAGATTTACTTAAGTCTCTGTGGAAGTCTTCTACAATTACTATAGACCAAATGAAACGAgtaacaacagagagataaggatcttgcacgatttcctgcatggctctatt Alignment from GeneWise GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA caatatatgctaaccttatattttgtgaccctttgtgttccatactgcagGCCATTGTGATGGTGTTAGAGTCAAGTGGGGAGAGTGCATTCAAGATGATCTTAGATTTACTTAAGTCTCTGTGGAAGTCTTCTACAATTACTATAGACCAAATGAAACGAgtaacaacagagagataaggatcttgcacgatttcctgcatggctctatt #### Pde6c_ID7534_4 --> 0 - 0 Original Alignment ATCCTTATGTGGTCAGCCAATAAAGTATTCGAAGAGCTCACTGATGTTGAGCGACAGTTTCACAAGGCACTGTACACCATCAGGACGTACCTGAACTGCGATCGCTACTCCATTGGTCTTCTGGACATGACCAAGGAGAAG agcttccctatactactcttctccattctgtttgtttgtttgtttaatagATGCTCATGTGGTCTGCGAATAAAGTATTCGAAGAGCTCACTGATGTTAAGCAACGGTTTCACAAGGCACTGTACACTATCAAGACATACCTGAACTGTGCTCGCTACTCCATTGGTCTTCCGGACATGACAAAGGAGAAGgttcgtacattcccactgtcccgtactttgataagtagataagcagttga Alignment from CESAR ATCCTTATGTGGTCAGCCAATAAAGTATTCGAAGAGCTCACTGATGTTGAGCGACAGTTTCACAAGGCACTGTACACCATCAGGACGTACCTGAACTGCGATCGCTACTCCATTGGTCTTCTGGACATGACCAAGGAGAAG agcttccctatactactcttctccattctgtttgtttgtttgtttaatagATGCTCATGTGGTCTGCGAATAAAGTATTCGAAGAGCTCACTGATGTTAAGCAACGGTTTCACAAGGCACTGTACACTATCAAGACATACCTGAACTGTGCTCGCTACTCCATTGGTCTTCCGGACATGACAAAGGAGAAGgttcgtacattcccactgtcccgtactttgataagtagataagcagttga Alignment from Spaln_aa2Genome ATCCTTATGTGGTCAGCCAATAAAGTATTCGAAGAGCTCACTGATGTTGAGCGACAGTTTCACAAGGCACTGTACACCATCAGGACGTACCTGAACTGCGATCGCTACTCCATTGGTCTTCTGGACATGACCAAGGAGAAG agcttccctatactactcttctccattctgtttgtttgtttgtttaatagATGCTCATGTGGTCTGCGAATAAAGTATTCGAAGAGCTCACTGATGTTAAGCAACGGTTTCACAAGGCACTGTACACTATCAAGACATACCTGAACTGTGCTCGCTACTCCATTGGTCTTCCGGACATGACAAAGGAGAAGgttcgtacattcccactgtcccgtactttgataagtagataagcagttga Alignment from Spaln_nt2Genome ATCCTTATGTGGTCAGCCAATAAAGTATTCGAAGAGCTCACTGATGTTGAGCGACAGTTTCACAAGGCACTGTACACCATCAGGACGTACCTGAACTGCGATCGCTACTCCATTGGTCTTCTGGACATGACCAAGGAGAAG agcttccctatactactcttctccattctgtttgtttgtttgtttaatagATGCTCATGTGGTCTGCGAATAAAGTATTCGAAGAGCTCACTGATGTTAAGCAACGGTTTCACAAGGCACTGTACACTATCAAGACATACCTGAACTGTGCTCGCTACTCCATTGGTCTTCCGGACATGACAAAGGAGAAGgttcgtacattcccactgtcccgtactttgataagtagataagcagttga Alignment from Pairagon ATCCTTATGTGGTCAGCCAATAAAGTATTCGAAGAGCTCACTGATGTTGAGCGACAGTTTCACAAGGCACTGTACACCATCAGGACGTACCTGAACTGCGATCGCTACTCCATTGGTCTTCTGGACATGACCAAGGAGAAG agcttccctatactactcttctccattctgtttgtttgtttgtttaatagATGCTCATGTGGTCTGCGAATAAAGTATTCGAAGAGCTCACTGATGTTAAGCAACGGTTTCACAAGGCACTGTACACTATCAAGACATACCTGAACTGTGCTCGCTACTCCATTGGTCTTCCGGACATGACAAAGGAGAAGgttcgtacattcccactgtcccgtactttgataagtagataagcagttga Alignment from Exonerate_protein2genome ATCCTTATGTGGTCAGCCAATAAAGTATTCGAAGAGCTCACTGATGTTGAGCGACAGTTTCACAAGGCACTGTACACCATCAGGACGTACCTGAACTGCGATCGCTACTCCATTGGTCTTCTGGACATGACCAAGGAGAAG agcttccctatactactcttctccattctgtttgtttgtttgtttaatagATGCTCATGTGGTCTGCGAATAAAGTATTCGAAGAGCTCACTGATGTTAAGCAACGGTTTCACAAGGCACTGTACACTATCAAGACATACCTGAACTGTGCTCGCTACTCCATTGGTCTTCCGGACATGACAAAGGAGAAGgttcgtacattcccactgtcccgtactttgataagtagataagcagttga Alignment from Exonerate_coding2genome ATCCTTATGTGGTCAGCCAATAAAGTATTCGAAGAGCTCACTGATGTTGAGCGACAGTTTCACAAGGCACTGTACACCATCAGGACGTACCTGAACTGCGATCGCTACTCCATTGGTCTTCTGGACATGACCAAGGAGAAG agcttccctatactactcttctccattctgtttgtttgtttgtttaatagATGCTCATGTGGTCTGCGAATAAAGTATTCGAAGAGCTCACTGATGTTAAGCAACGGTTTCACAAGGCACTGTACACTATCAAGACATACCTGAACTGTGCTCGCTACTCCATTGGTCTTCCGGACATGACAAAGGAGAAGgttcgtacattcccactgtcccgtactttgataagtagataagcagttga Alignment from GeneWise ATCCTTATGTGGTCAGCCAATAAAGTATTCGAAGAGCTCACTGATGTTGAGCGACAGTTTCACAAGGCACTGTACACCATCAGGACGTACCTGAACTGCGATCGCTACTCCATTGGTCTTCTGGACATGACCAAGGAGAAG agcttccctatactactcttctccattctgtttgtttgtttgtttaatagATGCTCATGTGGTCTGCGAATAAAGTATTCGAAGAGCTCACTGATGTTAAGCAACGGTTTCACAAGGCACTGTACACTATCAAGACATACCTGAACTGTGCTCGCTACTCCATTGGTCTTCCGGACATGACAAAGGAGAAGgttcgtacattcccactgtcccgtactttgataagtagataagcagttga #### Pde6c_ID7539_9 --> 0 - 0 Original Alignment AAAGGACCGGTAGATGAGACTGGCTGGGTCATTAAAAATGTCTTGTCCCTGCCTATTGTCAACAAGAAAGAAGACATCGTGGGTGTAGCTACGTTTTACAACCGGAAGGATGGGAAACCCTTTGATGAGCATGATGAACATATCACTGAG tttaatggtaatggccccaaggtaatgcctctgtttgcctgcactcgcagAAAGGTTCAGTGGATGAGACAGGGTGGGTCATTAAAAATGTTTTGTCACTACCTATTGTCAATAAGAAAGAAGACATT---GGTGTAGCTTCATTTTACAACCGAAAAGATGGCAAGCCTTTTGACGAGCATGATGAGCATATCACTGAGgtaagtgaggcaggctggtacggctgtgcaaataataaagtttcggagca Alignment from CESAR AAAGGACCGGTAGATGAGACTGGCTGGGTCATTAAAAATGTCTTGTCCCTGCCTATTGTCAACAAGAAAGAAGACATCGTGGGTGTAGCTACGTTTTACAACCGGAAGGATGGGAAACCCTTTGATGAGCATGATGAACATATCACTGAG tttaatggtaatggccccaaggtaatgcctctgtttgcctgcactcgcagAAAGGTTCAGTGGATGAGACAGGGTGGGTCATTAAAAATGTTTTGTCACTACCTATTGTCAATAAGAAAGAAGACATT---GGTGTAGCTTCATTTTACAACCGAAAAGATGGCAAGCCTTTTGACGAGCATGATGAGCATATCACTGAGgtaagtgaggcaggctggtacggctgtgcaaataataaagtttcggagca Alignment from Spaln_aa2Genome AAAGGACCGGTAGATGAGACTGGCTGGGTCATTAAAAATGTCTTGTCCCTGCCTATTGTCAACAAGAAAGAAGACATCGTGGGTGTAGCTACGTTTTACAACCGGAAGGATGGGAAACCCTTTGATGAGCATGATGAACATATCACTGAG tttaatggtaatggccccaaggtaatgcctctgtttgcctgcactcgcagAAAGGTTCAGTGGATGAGACAGGGTGGGTCATTAAAAATGTTTTGTCACTACCTATTGTCAATAAGAAAGAAGAC---ATTGGTGTAGCTTCATTTTACAACCGAAAAGATGGCAAGCCTTTTGACGAGCATGATGAGCATATCACTGAGgtaagtgaggcaggctggtacggctgtgcaaataataaagtttcggagca Alignment from Spaln_nt2Genome AAAGGACCGGTAGATGAGACTGGCTGGGTCATTAAAAATGTCTTGTCCCTGCCTATTGTCAACAAGAAAGAAGACATCGTGGGTGTAGCTACGTTTTACAACCGGAAGGATGGGAAACCCTTTGATGAGCATGATGAACATATCACTGAG tttaatggtaatggccccaaggtaatgcctctgtttgcctgcactcgcagAAAGGTTCAGTGGATGAGACAGGGTGGGTCATTAAAAATGTTTTGTCACTACCTATTGTCAATAAGAAAGAAGACA---TTGGTGTAGCTTCATTTTACAACCGAAAAGATGGCAAGCCTTTTGACGAGCATGATGAGCATATCACTGAGgtaagtgaggcaggctggtacggctgtgcaaataataaagtttcggagca Alignment from Pairagon AAAGGACCGGTAGATGAGACTGGCTGGGTCATTAAAAATGTCTTGTCCCTGCCTATTGTCAACAAGAAAGAAGACATCGTGGGTGTAGCTACGTTTTACAACCGGAAGGATGGGAAACCCTTTGATGAGCATGATGAACATATCACTGAG tttaatggtaatggccccaaggtaatgcctctgtttgcctgcactcgcagAAAGGTTCAGTGGATGAGACAGGGTGGGTCATTAAAAATGTTTTGTCACTACCTATTGTCAATAAGAAAGAAGACATT---GGTGTAGCTTCATTTTACAACCGAAAAGATGGCAAGCCTTTTGACGAGCATGATGAGCATATCACTGAGgtaagtgaggcaggctggtacggctgtgcaaataataaagtttcggagca Alignment from Exonerate_protein2genome AAAGGACCGGTAGATGAGACTGGCTGGGTCATTAAAAATGTCTTGTCCCTGCCTATTGTCAACAAGAAAGAAGACATCGTGGGTGTAGCTACGTTTTACAACCGGAAGGATGGGAAACCCTTTGATGAGCATGATGAACATATCACTGAG tttaatggtaatggccccaaggtaatgcctctgtttgcctgcactcgcagAAAGGTTCAGTGGATGAGACAGGGTGGGTCATTAAAAATGTTTTGTCACTACCTATTGTCAATAAGAAAGAAGACATT---GGTGTAGCTTCATTTTACAACCGAAAAGATGGCAAGCCTTTTGACGAGCATGATGAGCATATCACTGAGgtaagtgaggcaggctggtacggctgtgcaaataataaagtttcggagca Alignment from Exonerate_coding2genome AAAGGACCGGTAGATGAGACTGGCTGGGTCATTAAAAATGTCTTGTCCCTGCCTATTGTCAACAAGAAAGAAGACATCGTGGGTGTAGCTACGTTTTACAACCGGAAGGATGGGAAACCCTTTGATGAGCATGATGAACATATCACTGAG tttaatggtaatggccccaaggtaatgcctctgtttgcctgcactcgcagAAAGGTTCAGTGGATGAGACAGGGTGGGTCATTAAAAATGTTTTGTCACTACCTATTGTCAATAAGAAAGAAGACATT---GGTGTAGCTTCATTTTACAACCGAAAAGATGGCAAGCCTTTTGACGAGCATGATGAGCATATCACTGAGgtaagtgaggcaggctggtacggctgtgcaaataataaagtttcggagca Alignment from GeneWise AAAGGACCGGTAGATGAGACTGGCTGGGTCATTAAAAATGTCTTGTCCCTGCCTATTGTCAACAAGAAAGAAGACATCGTGGGTGTAGCTACGTTTTACAACCGGAAGGATGGGAAACCCTTTGATGAGCATGATGAACATATCACTGAG tttaatggtaatggccccaaggtaatgcctctgtttgcctgcactcgcagAAAGGTTCAGTGGATGAGACAGGGTGGGTCATTAAAAATGTTTTGTCACTACCTATTGTCAATAAGAAAGAAGACATT---GGTGTAGCTTCATTTTACAACCGAAAAGATGGCAAGCCTTTTGACGAGCATGATGAGCATATCACTGAGgtaagtgaggcaggctggtacggctgtgcaaataataaagtttcggagca #### Pde6c_ID7540_10 --> 0 - 0 Original Alignment ACTTTAACCCAGTTTCTTGGATGGTCTCTTTTAAACACCGATACCTATGAGCGAGTGAACAAGCTGGAAAGCAGAAAGGACATTGCTCAGGAAATGGTTATGAACCTCACAAAAGCCACCCCGGATGAAATCAGCTCTATTCTG aactataaaatctttttttagggaaaaatctctctattttctgtttgtagACCTTAACCCAATTTCTTGGATGGTCTCTTTTAAACACTGATACTTATGAGCGAGTAAACAAGCTAGAAAGCAGAAAGGACATCGCTCAGGAGATGGTCATGAACCTCACAAAAGCAACCCCTCATGAGATCAGTTCTATTCTGgtaagcccagtatgcatggtggacagatcatttttatatgcatccgctac Alignment from CESAR ACTTTAACCCAGTTTCTTGGATGGTCTCTTTTAAACACCGATACCTATGAGCGAGTGAACAAGCTGGAAAGCAGAAAGGACATTGCTCAGGAAATGGTTATGAACCTCACAAAAGCCACCCCGGATGAAATCAGCTCTATTCTG aactataaaatctttttttagggaaaaatctctctattttctgtttgtagACCTTAACCCAATTTCTTGGATGGTCTCTTTTAAACACTGATACTTATGAGCGAGTAAACAAGCTAGAAAGCAGAAAGGACATCGCTCAGGAGATGGTCATGAACCTCACAAAAGCAACCCCTCATGAGATCAGTTCTATTCTGgtaagcccagtatgcatggtggacagatcatttttatatgcatccgctac Alignment from Spaln_aa2Genome ACTTTAACCCAGTTTCTTGGATGGTCTCTTTTAAACACCGATACCTATGAGCGAGTGAACAAGCTGGAAAGCAGAAAGGACATTGCTCAGGAAATGGTTATGAACCTCACAAAAGCCACCCCGGATGAAATCAGCTCTATTCTG aactataaaatctttttttagggaaaaatctctctattttctgtttgtagACCTTAACCCAATTTCTTGGATGGTCTCTTTTAAACACTGATACTTATGAGCGAGTAAACAAGCTAGAAAGCAGAAAGGACATCGCTCAGGAGATGGTCATGAACCTCACAAAAGCAACCCCTCATGAGATCAGTTCTATTCTGgtaagcccagtatgcatggtggacagatcatttttatatgcatccgctac Alignment from Spaln_nt2Genome ACTTTAACCCAGTTTCTTGGATGGTCTCTTTTAAACACCGATACCTATGAGCGAGTGAACAAGCTGGAAAGCAGAAAGGACATTGCTCAGGAAATGGTTATGAACCTCACAAAAGCCACCCCGGATGAAATCAGCTCTATTCTG aactataaaatctttttttagggaaaaatctctctattttctgtttgtagACCTTAACCCAATTTCTTGGATGGTCTCTTTTAAACACTGATACTTATGAGCGAGTAAACAAGCTAGAAAGCAGAAAGGACATCGCTCAGGAGATGGTCATGAACCTCACAAAAGCAACCCCTCATGAGATCAGTTCTATTCTGgtaagcccagtatgcatggtggacagatcatttttatatgcatccgctac Alignment from Pairagon ACTTTAACCCAGTTTCTTGGATGGTCTCTTTTAAACACCGATACCTATGAGCGAGTGAACAAGCTGGAAAGCAGAAAGGACATTGCTCAGGAAATGGTTATGAACCTCACAAAAGCCACCCCGGATGAAATCAGCTCTATTCTG aactataaaatctttttttagggaaaaatctctctattttctgtttgtagACCTTAACCCAATTTCTTGGATGGTCTCTTTTAAACACTGATACTTATGAGCGAGTAAACAAGCTAGAAAGCAGAAAGGACATCGCTCAGGAGATGGTCATGAACCTCACAAAAGCAACCCCTCATGAGATCAGTTCTATTCTGgtaagcccagtatgcatggtggacagatcatttttatatgcatccgctac Alignment from Exonerate_protein2genome ACTTTAACCCAGTTTCTTGGATGGTCTCTTTTAAACACCGATACCTATGAGCGAGTGAACAAGCTGGAAAGCAGAAAGGACATTGCTCAGGAAATGGTTATGAACCTCACAAAAGCCACCCCGGATGAAATCAGCTCTATTCTG aactataaaatctttttttagggaaaaatctctctattttctgtttgtagACCTTAACCCAATTTCTTGGATGGTCTCTTTTAAACACTGATACTTATGAGCGAGTAAACAAGCTAGAAAGCAGAAAGGACATCGCTCAGGAGATGGTCATGAACCTCACAAAAGCAACCCCTCATGAGATCAGTTCTATTCTGgtaagcccagtatgcatggtggacagatcatttttatatgcatccgctac Alignment from Exonerate_coding2genome ACTTTAACCCAGTTTCTTGGATGGTCTCTTTTAAACACCGATACCTATGAGCGAGTGAACAAGCTGGAAAGCAGAAAGGACATTGCTCAGGAAATGGTTATGAACCTCACAAAAGCCACCCCGGATGAAATCAGCTCTATTCTG aactataaaatctttttttagggaaaaatctctctattttctgtttgtagACCTTAACCCAATTTCTTGGATGGTCTCTTTTAAACACTGATACTTATGAGCGAGTAAACAAGCTAGAAAGCAGAAAGGACATCGCTCAGGAGATGGTCATGAACCTCACAAAAGCAACCCCTCATGAGATCAGTTCTATTCTGgtaagcccagtatgcatggtggacagatcatttttatatgcatccgctac Alignment from GeneWise ACTTTAACCCAGTTTCTTGGATGGTCTCTTTTAAACACCGATACCTATGAGCGAGTGAACAAGCTGGAAAGCAGAAAGGACATTGCTCAGGAAATGGTTATGAACCTCACAAAAGCCACCCCGGATGAAATCAGCTCTATTCTG aactataaaatctttttttagggaaaaatctctctattttctgtttgtagACCTTAACCCAATTTCTTGGATGGTCTCTTTTAAACACTGATACTTATGAGCGAGTAAACAAGCTAGAAAGCAGAAAGGACATCGCTCAGGAGATGGTCATGAACCTCACAAAAGCAACCCCTCATGAGATCAGTTCTATTCTGgtaagcccagtatgcatggtggacagatcatttttatatgcatccgctac #### Pde6c_ID7542_12 --> 0 - 0 Original Alignment AAGGAGGACTTGCCGGACCCGAGAACAGCAGACCTGTACGAGTTCTGTTTCAGCGACTTCCCCATTACGGAGCACGAGTTGGTTAAATGCGGGCTGAGGCTGTTTTTGGAGATAAACGTGGTGGAGAAATTCAAAGTCCCTGTAGAG ttgttattgattaggtagaatttgaaataactaatttttttctaatacagAGGGAGGACTGGCCAGACCCAAGAACACCAGATCTGTATGAATTTTGCTTCACTGACTTCCCTATAACAGAGCATGAGTTAGTCAAATGCGGACTGACCTTGTTTTTGGAGATAAATGTTGTGGAGAAATTCAAAGTCCCTGTGGAGgtactatttccctaaaggctgctgtgcctgttggctggcactaaagattt Alignment from CESAR AAGGAGGACTTGCCGGACCCGAGAACAGCAGACCTGTACGAGTTCTGTTTCAGCGACTTCCCCATTACGGAGCACGAGTTGGTTAAATGCGGGCTGAGGCTGTTTTTGGAGATAAACGTGGTGGAGAAATTCAAAGTCCCTGTAGAG ttgttattgattaggtagaatttgaaataactaatttttttctaatacagAGGGAGGACTGGCCAGACCCAAGAACACCAGATCTGTATGAATTTTGCTTCACTGACTTCCCTATAACAGAGCATGAGTTAGTCAAATGCGGACTGACCTTGTTTTTGGAGATAAATGTTGTGGAGAAATTCAAAGTCCCTGTGGAGgtactatttccctaaaggctgctgtgcctgttggctggcactaaagattt Alignment from Spaln_aa2Genome AAGGAGGACTTGCCGGACCCGAGAACAGCAGACCTGTACGAGTTCTGTTTCAGCGACTTCCCCATTACGGAGCACGAGTTGGTTAAATGCGGGCTGAGGCTGTTTTTGGAGATAAACGTGGTGGAGAAATTCAAAGTCCCTGTAGAG ttgttattgattaggtagaatttgaaataactaatttttttctaatacagAGGGAGGACTGGCCAGACCCAAGAACACCAGATCTGTATGAATTTTGCTTCACTGACTTCCCTATAACAGAGCATGAGTTAGTCAAATGCGGACTGACCTTGTTTTTGGAGATAAATGTTGTGGAGAAATTCAAAGTCCCTGTGGAGgtactatttccctaaaggctgctgtgcctgttggctggcactaaagattt Alignment from Spaln_nt2Genome AAGGAGGACTTGCCGGACCCGAGAACAGCAGACCTGTACGAGTTCTGTTTCAGCGACTTCCCCATTACGGAGCACGAGTTGGTTAAATGCGGGCTGAGGCTGTTTTTGGAGATAAACGTGGTGGAGAAATTCAAAGTCCCTGTAGAG ttgttattgattaggtagaatttgaaataactaatttttttctaatacagAGGGAGGACTGGCCAGACCCAAGAACACCAGATCTGTATGAATTTTGCTTCACTGACTTCCCTATAACAGAGCATGAGTTAGTCAAATGCGGACTGACCTTGTTTTTGGAGATAAATGTTGTGGAGAAATTCAAAGTCCCTGTGGAGgtactatttccctaaaggctgctgtgcctgttggctggcactaaagattt Alignment from Pairagon AAGGAGGACTTGCCGGACCCGAGAACAGCAGACCTGTACGAGTTCTGTTTCAGCGACTTCCCCATTACGGAGCACGAGTTGGTTAAATGCGGGCTGAGGCTGTTTTTGGAGATAAACGTGGTGGAGAAATTCAAAGTCCCTGTAGAG ttgttattgattaggtagaatttgaaataactaatttttttctaatacagAGGGAGGACTGGCCAGACCCAAGAACACCAGATCTGTATGAATTTTGCTTCACTGACTTCCCTATAACAGAGCATGAGTTAGTCAAATGCGGACTGACCTTGTTTTTGGAGATAAATGTTGTGGAGAAATTCAAAGTCCCTGTGGAGgtactatttccctaaaggctgctgtgcctgttggctggcactaaagattt Alignment from Exonerate_protein2genome AAGGAGGACTTGCCGGACCCGAGAACAGCAGACCTGTACGAGTTCTGTTTCAGCGACTTCCCCATTACGGAGCACGAGTTGGTTAAATGCGGGCTGAGGCTGTTTTTGGAGATAAACGTGGTGGAGAAATTCAAAGTCCCTGTAGAG ttgttattgattaggtagaatttgaaataactaatttttttctaatacagAGGGAGGACTGGCCAGACCCAAGAACACCAGATCTGTATGAATTTTGCTTCACTGACTTCCCTATAACAGAGCATGAGTTAGTCAAATGCGGACTGACCTTGTTTTTGGAGATAAATGTTGTGGAGAAATTCAAAGTCCCTGTGGAGgtactatttccctaaaggctgctgtgcctgttggctggcactaaagattt Alignment from Exonerate_coding2genome AAGGAGGACTTGCCGGACCCGAGAACAGCAGACCTGTACGAGTTCTGTTTCAGCGACTTCCCCATTACGGAGCACGAGTTGGTTAAATGCGGGCTGAGGCTGTTTTTGGAGATAAACGTGGTGGAGAAATTCAAAGTCCCTGTAGAG ttgttattgattaggtagaatttgaaataactaatttttttctaatacagAGGGAGGACTGGCCAGACCCAAGAACACCAGATCTGTATGAATTTTGCTTCACTGACTTCCCTATAACAGAGCATGAGTTAGTCAAATGCGGACTGACCTTGTTTTTGGAGATAAATGTTGTGGAGAAATTCAAAGTCCCTGTGGAGgtactatttccctaaaggctgctgtgcctgttggctggcactaaagattt Alignment from GeneWise AAGGAGGACTTGCCGGACCCGAGAACAGCAGACCTGTACGAGTTCTGTTTCAGCGACTTCCCCATTACGGAGCACGAGTTGGTTAAATGCGGGCTGAGGCTGTTTTTGGAGATAAACGTGGTGGAGAAATTCAAAGTCCCTGTAGAG ttgttattgattaggtagaatttgaaataactaatttttttctaatacagAGGGAGGACTGGCCAGACCCAAGAACACCAGATCTGTATGAATTTTGCTTCACTGACTTCCCTATAACAGAGCATGAGTTAGTCAAATGCGGACTGACCTTGTTTTTGGAGATAAATGTTGTGGAGAAATTCAAAGTCCCTGTGGAGgtactatttccctaaaggctgctgtgcctgttggctggcactaaagattt #### Pde6c_ID7543_13 --> 0 - 0 Original Alignment GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG gtcaacctctttaatgttggagtagtgacgccttgtgcccccctgtacagATTCTTACAAAGTGGATGTACACAGTCCGAAAGGGGTACCGACCTGCTACATACCACAATTGGCGGCATGGGTCAAATGTGGGGTATACGATATCTCCTCTGTTAATGgtaaatttagctgtggatagactgaatgctctcttcctactaaatgccag Alignment from CESAR GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG gtcaacctctttaatgttggagtagtgacgccttgtgcccccctgtacagATTCTTACAAAGTGGATGTACACAGTCCGAAAGGGGTACCGACCTGCTACATACCACAATTGGCGGCATGGGTCAAATGTGGGGTATACGATATCTCCTCTGTTAATGgtaaatttagctgtggatagactgaatgctctcttcctactaaatgccag Alignment from Spaln_aa2Genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG gtcaacctctttaatgttggagtagtgacgccttgtgcccccctgtacagATTCTTACAAAGTGGATGTACACAGTCCGAAAGGGGTACCGACCTGCTACATACCACAATTGGCGGCATGGGTCAAATGTGGGGTATACGATATCTCCTCTGTTAATGgtaaatttagctgtggatagactgaatgctctcttcctactaaatgccag Alignment from Spaln_nt2Genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG gtcaacctctttaatgttggagtagtgacgccttgtgcccccctgtacagATTCTTACAAAGTGGATGTACACAGTCCGAAAGGGGTACCGACCTGCTACATACCACAATTGGCGGCATGGGTCAAATGTGGGGTATACGATATCTCCTCTGTTAATGgtaaatttagctgtggatagactgaatgctctcttcctactaaatgccag Alignment from Pairagon GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG gtcaacctctttaatgttggagtagtgacgccttgtgcccccctgtacagATTCTTACAAAGTGGATGTACACAGTCCGAAAGGGGTACCGACCTGCTACATACCACAATTGGCGGCATGGGTCAAATGTGGGGTATACGATATCTCCTCTGTTAATGgtaaatttagctgtggatagactgaatgctctcttcctactaaatgccag Alignment from Exonerate_protein2genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG gtcaacctctttaatgttggagtagtgacgccttgtgcccccctgtacagATTCTTACAAAGTGGATGTACACAGTCCGAAAGGGGTACCGACCTGCTACATACCACAATTGGCGGCATGGGTCAAATGTGGGGTATACGATATCTCCTCTGTTAATGgtaaatttagctgtggatagactgaatgctctcttcctactaaatgccag Alignment from Exonerate_coding2genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG gtcaacctctttaatgttggagtagtgacgccttgtgcccccctgtacagATTCTTACAAAGTGGATGTACACAGTCCGAAAGGGGTACCGACCTGCTACATACCACAATTGGCGGCATGGGTCAAATGTGGGGTATACGATATCTCCTCTGTTAATGgtaaatttagctgtggatagactgaatgctctcttcctactaaatgccag Alignment from GeneWise GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG gtcaacctctttaatgttggagtagtgacgccttgtgcccccctgtacagATTCTTACAAAGTGGATGTACACAGTCCGAAAGGGGTACCGACCTGCTACATACCACAATTGGCGGCATGGGTCAAATGTGGGGTATACGATATCTCCTCTGTTAATGgtaaatttagctgtggatagactgaatgctctcttcctactaaatgccag #### Pde6c_ID7544_14 --> 0 - 2 Original Alignment ACAGGAAGACTAAAGAAATACTATACAGACCTTGAAGCCTTTGCCATGCTCGCTGCTGCTTTCTGCCATGACATTGACCACAGAGGCACCAATAACTTGTACCAAATGaa ctgactgttgtgaataaatgcaagtgattatgaatatatatgcattttagACAGGGAGATTAAAAAAATACTATACAGACCTTGAAGCTTTC---------ACTTCTGCCTTCTGCCATGATATGGATCATAGAGCAACCAACAACTTGTACCAAATGcagttagtaatgactagtattcacatagaggttctgattaattcttaggagg Alignment from CESAR ACAGGAAGACTAAAGAAATACTATACAGACCTTGAAGCCTTTGCCATGCTCGCTGCTGCTTTCTGCCATGACATTGACCACAGAGGCACCAATAACTTGTACCAAATGaa ctgactgttgtgaataaatgcaagtgattatgaatatatatgcattttagACAGGGAGATTAAAAAAATACTATACAGACCTTGAAGCTTTC---------ACTTCTGCCTTCTGCCATGATATGGATCATAGAGCAACCAACAACTTGTACCAAATGcagttagtaatgactagtattcacatagaggttctgattaattcttaggagg Alignment from Spaln_aa2Genome ACAGGAAGACTAAAGAAATACTATACAGACCTTGAAGCCTTTGCCATGCTCGCTGCTGCTTTCTGCCATGACATTGACCACAGAGGCACCAATAACTTGTACCAAATGAA ctgactgttgtgaataaatgcaagtgattatgaatatatatgcattttagACAGGGAGATTAAAAAAATACTATACAGACCTTGAAGCTTTC---------ACTTCTGCCTTCTGCCATGATATGGATCATAGAGCAACCAACAACTTGTACCAAATGCAgttagtaatgactagtattcacatagaggttctgattaattcttaggagg Alignment from Spaln_nt2Genome ACAGGAAGACTAAAGAAATACTATACAGACCTTGAAGCCTTTGCCATGCTCGCTGCTGCTTTCTGCCATGACATTGACCACAGAGGCACCAATAACTTGTACCAAATGAA ctgactgttgtgaataaatgcaagtgattatgaatatatatgcattttagACAGGGAGATTAAAAAAATACTATACAGACCTTGAAGCTT---------TCACTTCTGCCTTCTGCCATGATATGGATCATAGAGCAACCAACAACTTGTACCAAATGCAgttagtaatgactagtattcacatagaggttctgattaattcttaggagg Alignment from Pairagon ACAGGAAGACTAAAGAAATACTATACAGACCTTGAAGCCTTTGCCATGCTCGCTGCTGCTTTCTGCCATGACATTGACCACAGAGGCACCAATAACTTGTACCAAATGAA ctgactgttgtgaataaatgcaagtgattatgaatatatatgcattttagACAGGGAGATTAAAAAAATACTATACAGACCTTGAAGCTT---------TCACTTCTGCCTTCTGCCATGATATGGATCATAGAGCAACCAACAACTTGTACCAAATGCAgttagtaatgactagtattcacatagaggttctgattaattcttaggagg Alignment from Exonerate_protein2genome ACAGGAAGACTAAAGAAATACTATACAGACCTTGAAGCCTTTGCCATGCTCGCTGCTGCTTTCTGCCATGACATTGACCACAGAGGCACCAATAACTTGTACCAAATGAA ctgactgttgtgaataaatgcaagtgattatgaatatatatgcattttagACAGGGAGATTAAAAAAATACTATACAGACCTTGAAGCTTTC---------ACTTCTGCCTTCTGCCATGATATGGATCATAGAGCAACCAACAACTTGTACCAAATGCAgttagtaatgactagtattcacatagaggttctgattaattcttaggagg Alignment from Exonerate_coding2genome ACAGGAAGACTAAAGAAATACTATACAGACCTTGAAGCCTTTGCCATGCTCGCTGCTGCTTTCTGCCATGACATTGACCACAGAGGCACCAATAACTTGTACCAAATGAA ctgactgttgtgaataaatgcaagtgattatgaatatatatgcattttagACAGGGAGATTAAAAAAATACTATACAGACCTTGAAGCTTTC---------ACTTCTGCCTTCTGCCATGATATGGATCATAGAGCAACCAACAACTTGTACCAAATGCAgttagtaatgactagtattcacatagaggttctgattaattcttaggagg Alignment from GeneWise ACAGGAAGACTAAAGAAATACTATACAGACCTTGAAGCCTTTGCCATGCTCGCTGCTGCTTTCTGCCATGACATTGACCACAGAGGCACCAATAACTTGTACCAAATGAA ctgactgttgtgaataaatgcaagtgattatgaatatatatgcattttagACAGGGAGATTAAAAAAATACTATACAGACCTTGAAGCTTTCACT---------TCTGCCTTCTGCCATGATATGGATCATAGAGCAACCAACAACTTGTACCAAATGCAgttagtaatgactagtattcacatagaggttctgattaattcttaggagg #### Pde6c_ID7546_16 --> 0 - 2 Original Alignment AGTTTAAACATCTTCCAGAATCTAAACAAGCGGCAGTTTGAAACGGTGATCCATTTGTTCGAGGTTGCAATAATAGCAACTGACCTGGCACTCTATTTCaa ttttttttgtagttggtgtctgcaaccatacccttgttgttctgtttcagAGTCTGAATGTCTTCCAGAACCTGAATACACGCCAGTTTGAGACAGTAATCCAACTGTTTGTGATTGCAATAATTGTAACCTGGCTATCACTCTATTTCaagtgagtcatcctttgagccccctcctcgtccctctacaagctgtacttaa Alignment from CESAR AGTTTAAACATCTTCCAGAATCTAAACAAGCGGCAGTTTGAAACGGTGATCCATTTGTTCGAGGTTGCAATAATAGCAACTGACCTGGCACTCTATTTCaa ttttttttgtagttggtgtctgcaaccatacccttgttgttctgtttcagAGTCTGAATGTCTTCCAGAACCTGAATACACGCCAGTTTGAGACAGTAATCCAACTGTTTGTGATTGCAATAATTGTAACCTGGCTATCACTCTATTTCaagtgagtcatcctttgagccccctcctcgtccctctacaagctgtacttaa Alignment from Spaln_aa2Genome AGTTTAAACATCTTCCAGAATCTAAACAAGCGGCAGTTTGAAACGGTGATCCATTTGTTCGAGGTTGCAATAATAGCAACTGACCTGGCACTCTATTTCAA ttttttttgtagttggtgtctgcaaccatacccttgttgttctgtttcagAGTCTGAATGTCTTCCAGAACCTGAATACACGCCAGTTTGAGACAGTAATCCAACTGTTTGTGATTGCAATAATTGTAACCTGGCTATCACTCTATTTCAAgtgagtcatcctttgagccccctcctcgtccctctacaagctgtacttaa Alignment from Spaln_nt2Genome AGTTTAAACATCTTCCAGAATCTAAACAAGCGGCAGTTTGAAACGGTGATCCATTTGTTCGAGGTTGCAATAATAGCAACTGACCTGGCACTCTATTTCAA ttttttttgtagttggtgtctgcaaccatacccttgttgttctgtttcagAGTCTGAATGTCTTCCAGAACCTGAATACACGCCAGTTTGAGACAGTAATCCAACTGTTTGTGATTGCAATAATTGTAACCTGGCTATCACTCTATTTCAAgtgagtcatcctttgagccccctcctcgtccctctacaagctgtacttaa Alignment from Pairagon AGTTTAAACATCTTCCAGAATCTAAACAAGCGGCAGTTTGAAACGGTGATCCATTTGTTCGAGGTTGCAATAATAGCAACTGACCTGGCACTCTATTTCAA ttttttttgtagttggtgtctgcaaccatacccttgttgttctgtttcagAGTCTGAATGTCTTCCAGAACCTGAATACACGCCAGTTTGAGACAGTAATCCAACTGTTTGTGATTGCAATAATTGTAACCTGGCTATCACTCTATTTCAAgtgagtcatcctttgagccccctcctcgtccctctacaagctgtacttaa Alignment from Exonerate_protein2genome AGTTTAAACATCTTCCAGAATCTAAACAAGCGGCAGTTTGAAACGGTGATCCATTTGTTCGAGGTTGCAATAATAGCAACTGACCTGGCACTCTATTTCAA ttttttttgtagttggtgtctgcaaccatacccttgttgttctgtttcagAGTCTGAATGTCTTCCAGAACCTGAATACACGCCAGTTTGAGACAGTAATCCAACTGTTTGTGATTGCAATAATTGTAACCTGGCTATCACTCTATTTCAAgtgagtcatcctttgagccccctcctcgtccctctacaagctgtacttaa Alignment from Exonerate_coding2genome AGTTTAAACATCTTCCAGAATCTAAACAAGCGGCAGTTTGAAACGGTGATCCATTTGTTCGAGGTTGCAATAATAGCAACTGACCTGGCACTCTATTTCAA ttttttttgtagttggtgtctgcaaccatacccttgttgttctgtttcagAGTCTGAATGTCTTCCAGAACCTGAATACACGCCAGTTTGAGACAGTAATCCAACTGTTTGTGATTGCAATAATTGTAACCTGGCTATCACTCTATTTCAAgtgagtcatcctttgagccccctcctcgtccctctacaagctgtacttaa Alignment from GeneWise AGTTTAAACATCTTCCAGAATCTAAACAAGCGGCAGTTTGAAACGGTGATCCATTTGTTCGAGGTTGCAATAATAGCAACTGACCTGGCACTCTATTTCAA ttttttttgtagttggtgtctgcaaccatacccttgttgttctgtttcagAGTCTGAATGTCTTCCAGAACCTGAATACACGCCAGTTTGAGACAGTAATCCAACTGTTTGTGATTGCAATAATTGTAACCTGGCTATCACTCTATTTCAAgtgagtcatcctttgagccccctcctcgtccctctacaagctgtacttaa #### Pde6c_ID7547_17 --> 1 - 2 Original Alignment gAAGAGAACCATGTTTCAAAAGATCGTTGATACCTGCGAGCAGATGCAAAGTGAAGAAGAAACCATCAAATACGTAACCTCCGACCCGACCAAAAAGGAAGTCATCat gtaaggacaggcctctaaagaagaacaagattctgtgtgtttttctccagaAAGAGAACCATGTTCCAGAAAATTGTTGATACATGTGAGCAGATGCAAAGTGAAGAGGAAACCATCAAATACATTACCTCTGACCCAACCAAAAAGGAAGTGATCatgtgagtagcaagcagtagattccctcttggaagtttcattaatcctggtt Alignment from CESAR gAAGAGAACCATGTTTCAAAAGATCGTTGATACCTGCGAGCAGATGCAAAGTGAAGAAGAAACCATCAAATACGTAACCTCCGACCCGACCAAAAAGGAAGTCATCat gtaaggacaggcctctaaagaagaacaagattctgtgtgtttttctccagaAAGAGAACCATGTTCCAGAAAATTGTTGATACATGTGAGCAGATGCAAAGTGAAGAGGAAACCATCAAATACATTACCTCTGACCCAACCAAAAAGGAAGTGATCatgtgagtagcaagcagtagattccctcttggaagtttcattaatcctggtt Alignment from Spaln_aa2Genome GAAGAGAACCATGTTTCAAAAGATCGTTGATACCTGCGAGCAGATGCAAAGTGAAGAAGAAACCATCAAATACGTAACCTCCGACCCGACCAAAAAGGAAGTCATCAT gtaaggacaggcctctaaagaagaacaagattctgtgtgtttttctccagAAAGAGAACCATGTTCCAGAAAATTGTTGATACATGTGAGCAGATGCAAAGTGAAGAGGAAACCATCAAATACATTACCTCTGACCCAACCAAAAAGGAAGTGATCATgtgagtagcaagcagtagattccctcttggaagtttcattaatcctggtt Alignment from Spaln_nt2Genome GAAGAGAACCATGTTTCAAAAGATCGTTGATACCTGCGAGCAGATGCAAAGTGAAGAAGAAACCATCAAATACGTAACCTCCGACCCGACCAAAAAGGAAGTCATCAT gtaaggacaggcctctaaagaagaacaagattctgtgtgtttttctccagAAAGAGAACCATGTTCCAGAAAATTGTTGATACATGTGAGCAGATGCAAAGTGAAGAGGAAACCATCAAATACATTACCTCTGACCCAACCAAAAAGGAAGTGATCATgtgagtagcaagcagtagattccctcttggaagtttcattaatcctggtt Alignment from Pairagon GAAGAGAACCATGTTTCAAAAGATCGTTGATACCTGCGAGCAGATGCAAAGTGAAGAAGAAACCATCAAATACGTAACCTCCGACCCGACCAAAAAGGAAGTCATCAT gtaaggacaggcctctaaagaagaacaagattctgtgtgtttttctccagAAAGAGAACCATGTTCCAGAAAATTGTTGATACATGTGAGCAGATGCAAAGTGAAGAGGAAACCATCAAATACATTACCTCTGACCCAACCAAAAAGGAAGTGATCATgtgagtagcaagcagtagattccctcttggaagtttcattaatcctggtt Alignment from Exonerate_protein2genome GAAGAGAACCATGTTTCAAAAGATCGTTGATACCTGCGAGCAGATGCAAAGTGAAGAAGAAACCATCAAATACGTAACCTCCGACCCGACCAAAAAGGAAGTCATCAT gtaaggacaggcctctaaagaagaacaagattctgtgtgtttttctccagAAAGAGAACCATGTTCCAGAAAATTGTTGATACATGTGAGCAGATGCAAAGTGAAGAGGAAACCATCAAATACATTACCTCTGACCCAACCAAAAAGGAAGTGATCATgtgagtagcaagcagtagattccctcttggaagtttcattaatcctggtt Alignment from Exonerate_coding2genome GAAGAGAACCATGTTTCAAAAGATCGTTGATACCTGCGAGCAGATGCAAAGTGAAGAAGAAACCATCAAATACGTAACCTCCGACCCGACCAAAAAGGAAGTCATCAT gtaaggacaggcctctaaagaagaacaagattctgtgtgtttttctccagAAAGAGAACCATGTTCCAGAAAATTGTTGATACATGTGAGCAGATGCAAAGTGAAGAGGAAACCATCAAATACATTACCTCTGACCCAACCAAAAAGGAAGTGATCATgtgagtagcaagcagtagattccctcttggaagtttcattaatcctggtt Alignment from GeneWise GAAGAGAACCATGTTTCAAAAGATCGTTGATACCTGCGAGCAGATGCAAAGTGAAGAAGAAACCATCAAATACGTAACCTCCGACCCGACCAAAAAGGAAGTCATCAT gtaaggacaggcctctaaagaagaacaagattctgtgtgtttttctccagAAAGAGAACCATGTTCCAGAAAATTGTTGATACATGTGAGCAGATGCAAAGTGAAGAGGAAACCATCAAATACATTACCTCTGACCCAACCAAAAAGGAAGTGATCATgtgagtagcaagcagtagattccctcttggaagtttcattaatcctggtt #### Pde6c_ID7550_20 --> 0 - 0 Original Alignment CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG gatactcaaaactcaagaagctactcaaatgctatcgttaaccttttcagCCTATGATGGACAGAAGCAAAAAGGATGAACTCCCAAAACTACAAGTGGGATTTATAGATTTTGTTTGTACCTTTGTATATAAGgtaaggtgtctggctgaaagaaagctaaacatggtatctttaacatgtaa Alignment from CESAR CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG gatactcaaaactcaagaagctactcaaatgctatcgttaaccttttcagCCTATGATGGACAGAAGCAAAAAGGATGAACTCCCAAAACTACAAGTGGGATTTATAGATTTTGTTTGTACCTTTGTATATAAGgtaaggtgtctggctgaaagaaagctaaacatggtatctttaacatgtaa Alignment from Spaln_aa2Genome CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG gatactcaaaactcaagaagctactcaaatgctatcgttaaccttttcagCCTATGATGGACAGAAGCAAAAAGGATGAACTCCCAAAACTACAAGTGGGATTTATAGATTTTGTTTGTACCTTTGTATATAAGgtaaggtgtctggctgaaagaaagctaaacatggtatctttaacatgtaa Alignment from Spaln_nt2Genome CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG gatactcaaaactcaagaagctactcaaatgctatcgttaaccttttcagCCTATGATGGACAGAAGCAAAAAGGATGAACTCCCAAAACTACAAGTGGGATTTATAGATTTTGTTTGTACCTTTGTATATAAGgtaaggtgtctggctgaaagaaagctaaacatggtatctttaacatgtaa Alignment from Pairagon CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG gatactcaaaactcaagaagctactcaaatgctatcgttaaccttttcagCCTATGATGGACAGAAGCAAAAAGGATGAACTCCCAAAACTACAAGTGGGATTTATAGATTTTGTTTGTACCTTTGTATATAAGgtaaggtgtctggctgaaagaaagctaaacatggtatctttaacatgtaa Alignment from Exonerate_protein2genome CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG gatactcaaaactcaagaagctactcaaatgctatcgttaaccttttcagCCTATGATGGACAGAAGCAAAAAGGATGAACTCCCAAAACTACAAGTGGGATTTATAGATTTTGTTTGTACCTTTGTATATAAGgtaaggtgtctggctgaaagaaagctaaacatggtatctttaacatgtaa Alignment from Exonerate_coding2genome CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG gatactcaaaactcaagaagctactcaaatgctatcgttaaccttttcagCCTATGATGGACAGAAGCAAAAAGGATGAACTCCCAAAACTACAAGTGGGATTTATAGATTTTGTTTGTACCTTTGTATATAAGgtaaggtgtctggctgaaagaaagctaaacatggtatctttaacatgtaa Alignment from GeneWise CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG gatactcaaaactcaagaagctactcaaatgctatcgttaaccttttcagCCTATGATGGACAGAAGCAAAAAGGATGAACTCCCAAAACTACAAGTGGGATTTATAGATTTTGTTTGTACCTTTGTATATAAGgtaaggtgtctggctgaaagaaagctaaacatggtatctttaacatgtaa #### Pdlim1_ID7888_2 --> 0 - 2 Original Alignment GTCACTCCCGGAAGCAAGGCTGCTATAGCGAATTTATGTATTGGAGATTTAATCACAGCCATCGATGGGGAAGATACCAGCAGCATGACACACTTGGAAGCTCAGAACAAAATCAAGGGCTGCGCAGACAACATGACGCTCACAGTATCCag agtttactcaacacacagctgctgatctatttctttctgaacatttctagGTCACTCCCGGAAGCAAGGCTGCAATATCAAATTTATGTATTGGAGATTTAATCACAGCTATTGATGGAGAAGATAGTAGCAGCATGACACACTTAGAAGCTCAGAACAAAATCAAGGGCTGTGCAGACAACATGACTCTCACAGTATCCaagtaagtctgattgcgaattcaactcctctggatacctcttatgccttcat Alignment from CESAR GTCACTCCCGGAAGCAAGGCTGCTATAGCGAATTTATGTATTGGAGATTTAATCACAGCCATCGATGGGGAAGATACCAGCAGCATGACACACTTGGAAGCTCAGAACAAAATCAAGGGCTGCGCAGACAACATGACGCTCACAGTATCCag agtttactcaacacacagctgctgatctatttctttctgaacatttctagGTCACTCCCGGAAGCAAGGCTGCAATATCAAATTTATGTATTGGAGATTTAATCACAGCTATTGATGGAGAAGATAGTAGCAGCATGACACACTTAGAAGCTCAGAACAAAATCAAGGGCTGTGCAGACAACATGACTCTCACAGTATCCaagtaagtctgattgcgaattcaactcctctggatacctcttatgccttcat Alignment from Spaln_aa2Genome GTCACTCCCGGAAGCAAGGCTGCTATAGCGAATTTATGTATTGGAGATTTAATCACAGCCATCGATGGGGAAGATACCAGCAGCATGACACACTTGGAAGCTCAGAACAAAATCAAGGGCTGCGCAGACAACATGACGCTCACAGTATCCAG agtttactcaacacacagctgctgatctatttctttctgaacatttctagGTCACTCCCGGAAGCAAGGCTGCAATATCAAATTTATGTATTGGAGATTTAATCACAGCTATTGATGGAGAAGATAGTAGCAGCATGACACACTTAGAAGCTCAGAACAAAATCAAGGGCTGTGCAGACAACATGACTCTCACAGTATCCAAgtaagtctgattgcgaattcaactcctctggatacctcttatgccttcat Alignment from Spaln_nt2Genome GTCACTCCCGGAAGCAAGGCTGCTATAGCGAATTTATGTATTGGAGATTTAATCACAGCCATCGATGGGGAAGATACCAGCAGCATGACACACTTGGAAGCTCAGAACAAAATCAAGGGCTGCGCAGACAACATGACGCTCACAGTATCCAG agtttactcaacacacagctgctgatctatttctttctgaacatttctagGTCACTCCCGGAAGCAAGGCTGCAATATCAAATTTATGTATTGGAGATTTAATCACAGCTATTGATGGAGAAGATAGTAGCAGCATGACACACTTAGAAGCTCAGAACAAAATCAAGGGCTGTGCAGACAACATGACTCTCACAGTATCCAAgtaagtctgattgcgaattcaactcctctggatacctcttatgccttcat Alignment from Pairagon GTCACTCCCGGAAGCAAGGCTGCTATAGCGAATTTATGTATTGGAGATTTAATCACAGCCATCGATGGGGAAGATACCAGCAGCATGACACACTTGGAAGCTCAGAACAAAATCAAGGGCTGCGCAGACAACATGACGCTCACAGTATCCAG agtttactcaacacacagctgctgatctatttctttctgaacatttctagGTCACTCCCGGAAGCAAGGCTGCAATATCAAATTTATGTATTGGAGATTTAATCACAGCTATTGATGGAGAAGATAGTAGCAGCATGACACACTTAGAAGCTCAGAACAAAATCAAGGGCTGTGCAGACAACATGACTCTCACAGTATCCAAgtaagtctgattgcgaattcaactcctctggatacctcttatgccttcat Alignment from Exonerate_protein2genome GTCACTCCCGGAAGCAAGGCTGCTATAGCGAATTTATGTATTGGAGATTTAATCACAGCCATCGATGGGGAAGATACCAGCAGCATGACACACTTGGAAGCTCAGAACAAAATCAAGGGCTGCGCAGACAACATGACGCTCACAGTATCCAG agtttactcaacacacagctgctgatctatttctttctgaacatttctagGTCACTCCCGGAAGCAAGGCTGCAATATCAAATTTATGTATTGGAGATTTAATCACAGCTATTGATGGAGAAGATAGTAGCAGCATGACACACTTAGAAGCTCAGAACAAAATCAAGGGCTGTGCAGACAACATGACTCTCACAGTATCCAAgtaagtctgattgcgaattcaactcctctggatacctcttatgccttcat Alignment from Exonerate_coding2genome GTCACTCCCGGAAGCAAGGCTGCTATAGCGAATTTATGTATTGGAGATTTAATCACAGCCATCGATGGGGAAGATACCAGCAGCATGACACACTTGGAAGCTCAGAACAAAATCAAGGGCTGCGCAGACAACATGACGCTCACAGTATCCAG agtttactcaacacacagctgctgatctatttctttctgaacatttctagGTCACTCCCGGAAGCAAGGCTGCAATATCAAATTTATGTATTGGAGATTTAATCACAGCTATTGATGGAGAAGATAGTAGCAGCATGACACACTTAGAAGCTCAGAACAAAATCAAGGGCTGTGCAGACAACATGACTCTCACAGTATCCAAgtaagtctgattgcgaattcaactcctctggatacctcttatgccttcat Alignment from GeneWise GTCACTCCCGGAAGCAAGGCTGCTATAGCGAATTTATGTATTGGAGATTTAATCACAGCCATCGATGGGGAAGATACCAGCAGCATGACACACTTGGAAGCTCAGAACAAAATCAAGGGCTGCGCAGACAACATGACGCTCACAGTATCCAG agtttactcaacacacagctgctgatctatttctttctgaacatttctagGTCACTCCCGGAAGCAAGGCTGCAATATCAAATTTATGTATTGGAGATTTAATCACAGCTATTGATGGAGAAGATAGTAGCAGCATGACACACTTAGAAGCTCAGAACAAAATCAAGGGCTGTGCAGACAACATGACTCTCACAGTATCCAAgtaagtctgattgcgaattcaactcctctggatacctcttatgccttcat #### Pdzd8_ID12952_4 --> 0 - 1 Original Alignment GTTGAATTAATAAAAGGGAATTTACAAAGTGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCGATGGCAGATCTTCAACGGGGAGATCGGCTCATTGCTATTGGAg tgactacagagattattactgttttaatagcagtctttttcttcttgtagGTCGAATTGATAAAAGGGAATTTACAAAGTGTTGGTCTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTGATCATTGAAATGGTGGCCCCAAACTCACCAGCTGCAATGGCAGATCTCCAACGGGGAGATCGGCTAATTGCAATTGGTggtaagtctaggtttgcaatagggagatagataggctcattgctatttatg Alignment from CESAR GTTGAATTAATAAAAGGGAATTTACAAAGTGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCGATGGCAGATCTTCAACGGGGAGATCGGCTCATTGCTATTGGAg tgactacagagattattactgttttaatagcagtctttttcttcttgtagGTCGAATTGATAAAAGGGAATTTACAAAGTGTTGGTCTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTGATCATTGAAATGGTGGCCCCAAACTCACCAGCTGCAATGGCAGATCTCCAACGGGGAGATCGGCTAATTGCAATTGGTggtaagtctaggtttgcaatagggagatagataggctcattgctatttatg Alignment from Spaln_aa2Genome GTTGAATTAATAAAAGGGAATTTACAAAGTGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCGATGGCAGATCTTCAACGGGGAGATCGGCTCATTGCTATTGGAG tgactacagagattattactgttttaatagcagtctttttcttcttgtagGTCGAATTGATAAAAGGGAATTTACAAAGTGTTGGTCTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTGATCATTGAAATGGTGGCCCCAAACTCACCAGCTGCAATGGCAGATCTCCAACGGGGAGATCGGCTAATTGCAATTGGTGgtaagtctaggtttgcaatagggagatagataggctcattgctatttatg Alignment from Spaln_nt2Genome GTTGAATTAATAAAAGGGAATTTACAAAGTGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCGATGGCAGATCTTCAACGGGGAGATCGGCTCATTGCTATTGGAG tgactacagagattattactgttttaatagcagtctttttcttcttgtagGTCGAATTGATAAAAGGGAATTTACAAAGTGTTGGTCTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTGATCATTGAAATGGTGGCCCCAAACTCACCAGCTGCAATGGCAGATCTCCAACGGGGAGATCGGCTAATTGCAATTGGTGgtaagtctaggtttgcaatagggagatagataggctcattgctatttatg Alignment from Pairagon GTTGAATTAATAAAAGGGAATTTACAAAGTGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCGATGGCAGATCTTCAACGGGGAGATCGGCTCATTGCTATTGGAG tgactacagagattattactgttttaatagcagtctttttcttcttgtagGTCGAATTGATAAAAGGGAATTTACAAAGTGTTGGTCTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTGATCATTGAAATGGTGGCCCCAAACTCACCAGCTGCAATGGCAGATCTCCAACGGGGAGATCGGCTAATTGCAATTGGTGgtaagtctaggtttgcaatagggagatagataggctcattgctatttatg Alignment from Exonerate_protein2genome GTTGAATTAATAAAAGGGAATTTACAAAGTGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCGATGGCAGATCTTCAACGGGGAGATCGGCTCATTGCTATTGGAG tgactacagagattattactgttttaatagcagtctttttcttcttgtagGTCGAATTGATAAAAGGGAATTTACAAAGTGTTGGTCTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTGATCATTGAAATGGTGGCCCCAAACTCACCAGCTGCAATGGCAGATCTCCAACGGGGAGATCGGCTAATTGCAATTGGTGgtaagtctaggtttgcaatagggagatagataggctcattgctatttatg Alignment from Exonerate_coding2genome GTTGAATTAATAAAAGGGAATTTACAAAGTGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCGATGGCAGATCTTCAACGGGGAGATCGGCTCATTGCTATTGGAG tgactacagagattattactgttttaatagcagtctttttcttcttgtagGTCGAATTGATAAAAGGGAATTTACAAAGTGTTGGTCTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTGATCATTGAAATGGTGGCCCCAAACTCACCAGCTGCAATGGCAGATCTCCAACGGGGAGATCGGCTAATTGCAATTGGTGgtaagtctaggtttgcaatagggagatagataggctcattgctatttatg Alignment from GeneWise GTTGAATTAATAAAAGGGAATTTACAAAGTGTCGGACTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTCATAATCGAAACTGTGGCCCCAAACTCACCTGCTGCGATGGCAGATCTTCAACGGGGAGATCGGCTCATTGCTATTGGAG tgactacagagattattactgttttaatagcagtctttttcttcttgtagGTCGAATTGATAAAAGGGAATTTACAAAGTGTTGGTCTTACACTTCGTCTTGTTCAGTCAACTGATGGGTATGCTGGGCATGTGATCATTGAAATGGTGGCCCCAAACTCACCAGCTGCAATGGCAGATCTCCAACGGGGAGATCGGCTAATTGCAATTGGTGgtaagtctaggtttgcaatagggagatagataggctcattgctatttatg #### Pga5_ID2972_6 --> 1 - 2 Original Alignment cAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATag tcatacactttgaagtaccctggagatttccctccctgcaccccatacagtAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTAGACCCCTCCTACTACCATGGAGAACTTCATTGGGTACCTGTCTCAAAGCCCAGTTACTGGCAGTTAGCTGCGGATaggtgaggcataggcacctcttgccaataggcgctatctcggcagcatgcat Alignment from CESAR cAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATag tcatacactttgaagtaccctggagatttccctccctgcaccccatacagtAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTAGACCCCTCCTACTACCATGGAGAACTTCATTGGGTACCTGTCTCAAAGCCCAGTTACTGGCAGTTAGCTGCGGATaggtgaggcataggcacctcttgccaataggcgctatctcggcagcatgcat Alignment from Spaln_aa2Genome CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAG tcatacactttgaagtaccctggagatttccctccctgcaccccatacagTAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTAGACCCCTCCTACTACCATGGAGAACTTCATTGGGTACCTGTCTCAAAGCCCAGTTACTGGCAGTTAGCTGCGGATAGgtgaggcataggcacctcttgccaataggcgctatctcggcagcatgcat Alignment from Spaln_nt2Genome CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAG tcatacactttgaagtaccctggagatttccctccctgcaccccatacagTAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTAGACCCCTCCTACTACCATGGAGAACTTCATTGGGTACCTGTCTCAAAGCCCAGTTACTGGCAGTTAGCTGCGGATAGgtgaggcataggcacctcttgccaataggcgctatctcggcagcatgcat Alignment from Pairagon CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAG tcatacactttgaagtaccctggagatttccctccctgcaccccatacagTAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTAGACCCCTCCTACTACCATGGAGAACTTCATTGGGTACCTGTCTCAAAGCCCAGTTACTGGCAGTTAGCTGCGGATAGgtgaggcataggcacctcttgccaataggcgctatctcggcagcatgcat Alignment from Exonerate_protein2genome CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAG tcatacactttgaagtaccctggagatttccctccctgcaccccatacagTAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTAGACCCCTCCTACTACCATGGAGAACTTCATTGGGTACCTGTCTCAAAGCCCAGTTACTGGCAGTTAGCTGCGGATAGgtgaggcataggcacctcttgccaataggcgctatctcggcagcatgcat Alignment from Exonerate_coding2genome CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAG tcatacactttgaagtaccctggagatttccctccctgcaccccatacagTAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTAGACCCCTCCTACTACCATGGAGAACTTCATTGGGTACCTGTCTCAAAGCCCAGTTACTGGCAGTTAGCTGCGGATAGgtgaggcataggcacctcttgccaataggcgctatctcggcagcatgcat Alignment from GeneWise CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAG tcatacactttgaagtaccctggagatttccctccctgcaccccatacagTAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTAGACCCCTCCTACTACCATGGAGAACTTCATTGGGTACCTGTCTCAAAGCCCAGTTACTGGCAGTTAGCTGCGGATAGgtgaggcataggcacctcttgccaataggcgctatctcggcagcatgcat #### Pgam1_ID8326_2 --> 2 - 0 Original Alignment atGCTGGCTATGAATTTGACATCTGCTTCACCTCTGTGCAGAAGAGAGCAATCCGGACCCTCTGGACAGTCCTGGATGCCATTGACCAGATGTGGTTGCCAGTGGTCAGGACTTGGCGCCTCAATGAGCGACACTATGGCGGTCTGACAGGTCTCAACAAAGCAGAAACTGCTGCTAAGCATGGTGAGGCCCAGGTAAAGATCTGGAGACGATCTTATGATGTCCCACCGCCTCCCATGGAGCCTGATCACCCCTTCTACAGCAACATCAGCAAG gtgcttatgggtatggaaaattaacctctcaccttgtctccttgttccagatGCTGGATATGAATTTGACATCTGTTTCACCTCTGTGCAGAAGAGAGCAATCCGGACTCTCTGGACCGTCCTGGATGCCATTGATCAGATGTGGCTGCCAGTGGTTAGGACCTGGCGTCTCAATGAGCGACACTTTGGGGGACTTACAGGCCTCAATAGGGCAGAAACTGCTGCTAAACATGGTGAGGCTCAAGTCAAGATCTGGAAACGGACTTATGATGTCCCACCGCCTCCCATGGAGCCTGATCACCCCTTCTACAGAAACATCAGTAAGgtaagatcagattggaaggtagcctggacaacaaggtgaaaccctggccc Alignment from CESAR atGCTGGCTATGAATTTGACATCTGCTTCACCTCTGTGCAGAAGAGAGCAATCCGGACCCTCTGGACAGTCCTGGATGCCATTGACCAGATGTGGTTGCCAGTGGTCAGGACTTGGCGCCTCAATGAGCGACACTATGGCGGTCTGACAGGTCTCAACAAAGCAGAAACTGCTGCTAAGCATGGTGAGGCCCAGGTAAAGATCTGGAGACGATCTTATGATGTCCCACCGCCTCCCATGGAGCCTGATCACCCCTTCTACAGCAACATCAGCAAG gtgcttatgggtatggaaaattaacctctcaccttgtctccttgttccagatGCTGGATATGAATTTGACATCTGTTTCACCTCTGTGCAGAAGAGAGCAATCCGGACTCTCTGGACCGTCCTGGATGCCATTGATCAGATGTGGCTGCCAGTGGTTAGGACCTGGCGTCTCAATGAGCGACACTTTGGGGGACTTACAGGCCTCAATAGGGCAGAAACTGCTGCTAAACATGGTGAGGCTCAAGTCAAGATCTGGAAACGGACTTATGATGTCCCACCGCCTCCCATGGAGCCTGATCACCCCTTCTACAGAAACATCAGTAAGgtaagatcagattggaaggtagcctggacaacaaggtgaaaccctggccc Alignment from Spaln_aa2Genome ATGCTGGCTATGAATTTGACATCTGCTTCACCTCTGTGCAGAAGAGAGCAATCCGGACCCTCTGGACAGTCCTGGATGCCATTGACCAGATGTGGTTGCCAGTGGTCAGGACTTGGCGCCTCAATGAGCGACACTATGGCGGTCTGACAGGTCTCAACAAAGCAGAAACTGCTGCTAAGCATGGTGAGGCCCAGGTAAAGATCTGGAGACGATCTTATGATGTCCCACCGCCTCCCATGGAGCCTGATCACCCCTTCTACAGCAACATCAGCAAG gtgcttatgggtatggaaaattaacctctcaccttgtctccttgttccagATGCTGGATATGAATTTGACATCTGTTTCACCTCTGTGCAGAAGAGAGCAATCCGGACTCTCTGGACCGTCCTGGATGCCATTGATCAGATGTGGCTGCCAGTGGTTAGGACCTGGCGTCTCAATGAGCGACACTTTGGGGGACTTACAGGCCTCAATAGGGCAGAAACTGCTGCTAAACATGGTGAGGCTCAAGTCAAGATCTGGAAACGGACTTATGATGTCCCACCGCCTCCCATGGAGCCTGATCACCCCTTCTACAGAAACATCAGTAAGgtaagatcagattggaaggtagcctggacaacaaggtgaaaccctggccc Alignment from Spaln_nt2Genome ATGCTGGCTATGAATTTGACATCTGCTTCACCTCTGTGCAGAAGAGAGCAATCCGGACCCTCTGGACAGTCCTGGATGCCATTGACCAGATGTGGTTGCCAGTGGTCAGGACTTGGCGCCTCAATGAGCGACACTATGGCGGTCTGACAGGTCTCAACAAAGCAGAAACTGCTGCTAAGCATGGTGAGGCCCAGGTAAAGATCTGGAGACGATCTTATGATGTCCCACCGCCTCCCATGGAGCCTGATCACCCCTTCTACAGCAACATCAGCAAG gtgcttatgggtatggaaaattaacctctcaccttgtctccttgttccagATGCTGGATATGAATTTGACATCTGTTTCACCTCTGTGCAGAAGAGAGCAATCCGGACTCTCTGGACCGTCCTGGATGCCATTGATCAGATGTGGCTGCCAGTGGTTAGGACCTGGCGTCTCAATGAGCGACACTTTGGGGGACTTACAGGCCTCAATAGGGCAGAAACTGCTGCTAAACATGGTGAGGCTCAAGTCAAGATCTGGAAACGGACTTATGATGTCCCACCGCCTCCCATGGAGCCTGATCACCCCTTCTACAGAAACATCAGTAAGgtaagatcagattggaaggtagcctggacaacaaggtgaaaccctggccc Alignment from Pairagon ATGCTGGCTATGAATTTGACATCTGCTTCACCTCTGTGCAGAAGAGAGCAATCCGGACCCTCTGGACAGTCCTGGATGCCATTGACCAGATGTGGTTGCCAGTGGTCAGGACTTGGCGCCTCAATGAGCGACACTATGGCGGTCTGACAGGTCTCAACAAAGCAGAAACTGCTGCTAAGCATGGTGAGGCCCAGGTAAAGATCTGGAGACGATCTTATGATGTCCCACCGCCTCCCATGGAGCCTGATCACCCCTTCTACAGCAACATCAGCAAG gtgcttatgggtatggaaaattaacctctcaccttgtctccttgttccagATGCTGGATATGAATTTGACATCTGTTTCACCTCTGTGCAGAAGAGAGCAATCCGGACTCTCTGGACCGTCCTGGATGCCATTGATCAGATGTGGCTGCCAGTGGTTAGGACCTGGCGTCTCAATGAGCGACACTTTGGGGGACTTACAGGCCTCAATAGGGCAGAAACTGCTGCTAAACATGGTGAGGCTCAAGTCAAGATCTGGAAACGGACTTATGATGTCCCACCGCCTCCCATGGAGCCTGATCACCCCTTCTACAGAAACATCAGTAAGgtaagatcagattggaaggtagcctggacaacaaggtgaaaccctggccc Alignment from Exonerate_protein2genome ATGCTGGCTATGAATTTGACATCTGCTTCACCTCTGTGCAGAAGAGAGCAATCCGGACCCTCTGGACAGTCCTGGATGCCATTGACCAGATGTGGTTGCCAGTGGTCAGGACTTGGCGCCTCAATGAGCGACACTATGGCGGTCTGACAGGTCTCAACAAAGCAGAAACTGCTGCTAAGCATGGTGAGGCCCAGGTAAAGATCTGGAGACGATCTTATGATGTCCCACCGCCTCCCATGGAGCCTGATCACCCCTTCTACAGCAACATCAGCAAG gtgcttatgggtatggaaaattaacctctcaccttgtctccttgttccagATGCTGGATATGAATTTGACATCTGTTTCACCTCTGTGCAGAAGAGAGCAATCCGGACTCTCTGGACCGTCCTGGATGCCATTGATCAGATGTGGCTGCCAGTGGTTAGGACCTGGCGTCTCAATGAGCGACACTTTGGGGGACTTACAGGCCTCAATAGGGCAGAAACTGCTGCTAAACATGGTGAGGCTCAAGTCAAGATCTGGAAACGGACTTATGATGTCCCACCGCCTCCCATGGAGCCTGATCACCCCTTCTACAGAAACATCAGTAAGgtaagatcagattggaaggtagcctggacaacaaggtgaaaccctggccc Alignment from Exonerate_coding2genome ATGCTGGCTATGAATTTGACATCTGCTTCACCTCTGTGCAGAAGAGAGCAATCCGGACCCTCTGGACAGTCCTGGATGCCATTGACCAGATGTGGTTGCCAGTGGTCAGGACTTGGCGCCTCAATGAGCGACACTATGGCGGTCTGACAGGTCTCAACAAAGCAGAAACTGCTGCTAAGCATGGTGAGGCCCAGGTAAAGATCTGGAGACGATCTTATGATGTCCCACCGCCTCCCATGGAGCCTGATCACCCCTTCTACAGCAACATCAGCAAG gtgcttatgggtatggaaaattaacctctcaccttgtctccttgttccagATGCTGGATATGAATTTGACATCTGTTTCACCTCTGTGCAGAAGAGAGCAATCCGGACTCTCTGGACCGTCCTGGATGCCATTGATCAGATGTGGCTGCCAGTGGTTAGGACCTGGCGTCTCAATGAGCGACACTTTGGGGGACTTACAGGCCTCAATAGGGCAGAAACTGCTGCTAAACATGGTGAGGCTCAAGTCAAGATCTGGAAACGGACTTATGATGTCCCACCGCCTCCCATGGAGCCTGATCACCCCTTCTACAGAAACATCAGTAAGgtaagatcagattggaaggtagcctggacaacaaggtgaaaccctggccc Alignment from GeneWise ATGCTGGCTATGAATTTGACATCTGCTTCACCTCTGTGCAGAAGAGAGCAATCCGGACCCTCTGGACAGTCCTGGATGCCATTGACCAGATGTGGTTGCCAGTGGTCAGGACTTGGCGCCTCAATGAGCGACACTATGGCGGTCTGACAGGTCTCAACAAAGCAGAAACTGCTGCTAAGCATGGTGAGGCCCAGGTAAAGATCTGGAGACGATCTTATGATGTCCCACCGCCTCCCATGGAGCCTGATCACCCCTTCTACAGCAACATCAGCAAG gtgcttatgggtatggaaaattaacctctcaccttgtctccttgttccagATGCTGGATATGAATTTGACATCTGTTTCACCTCTGTGCAGAAGAGAGCAATCCGGACTCTCTGGACCGTCCTGGATGCCATTGATCAGATGTGGCTGCCAGTGGTTAGGACCTGGCGTCTCAATGAGCGACACTTTGGGGGACTTACAGGCCTCAATAGGGCAGAAACTGCTGCTAAACATGGTGAGGCTCAAGTCAAGATCTGGAAACGGACTTATGATGTCCCACCGCCTCCCATGGAGCCTGATCACCCCTTCTACAGAAACATCAGTAAGgtaagatcagattggaaggtagcctggacaacaaggtgaaaccctggccc #### Pi4k2a_ID8399_2 --> 0 - 0 Original Alignment AGAATCGTTGCTGTCTTCAAACCCAAGAATGAAGAGCCATACGGGCACCTTAACCCTAAGTGGACCAAGTGGCTGCAGAAGCTGTGCTGCCCCTGCTGCTTTGGCCGAGACTGCCTTGTTCTCAACCAGGGCTATCTCTCAGAGGCAGGGGCTAGCCTGGTGGACCAAAAACTGGAACTCAACATTGTACCACGTACAAAG ctctgactatgaggcatctctcattctttttttttttttccgttttgcagAGGATTCCCGCTCTATTCCAGCCAAAGAATGAAGAACCATATGGGCACTTCAACCCTAAATGGGCCAAATGGCTTCAGAAACTGTGCTGCCCCTCCTGTTTTGGCCGA---GGTCTTGTTCTCAACCAGGGTTACCTATCTGAAGCAGGTGCTAGCCTGGTTGACCAAAAGTTAGAACTTAATATTGTATCACAAATGAGGgtgggaagggaattcccaggaactacatacaagtatttttttgaaagtgg Alignment from CESAR AGAATCGTTGCTGTCTTCAAACCCAAGAATGAAGAGCCATACGGGCACCTTAACCCTAAGTGGACCAAGTGGCTGCAGAAGCTGTGCTGCCCCTGCTGCTTTGGCCGAGACTGCCTTGTTCTCAACCAGGGCTATCTCTCAGAGGCAGGGGCTAGCCTGGTGGACCAAAAACTGGAACTCAACATTGTACCACGTACAAAG ctctgactatgaggcatctctcattctttttttttttttccgttttgcagAGGATTCCCGCTCTATTCCAGCCAAAGAATGAAGAACCATATGGGCACTTCAACCCTAAATGGGCCAAATGGCTTCAGAAACTGTGCTGCCCCTCCTGTTTTGGCCGAGGT---CTTGTTCTCAACCAGGGTTACCTATCTGAAGCAGGTGCTAGCCTGGTTGACCAAAAGTTAGAACTTAATATTGTATCACAAATGAGGgtgggaagggaattcccaggaactacatacaagtatttttttgaaagtgg Alignment from Spaln_aa2Genome AGAATCGTTGCTGTCTTCAAACCCAAGAATGAAGAGCCATACGGGCACCTTAACCCTAAGTGGACCAAGTGGCTGCAGAAGCTGTGCTGCCCCTGCTGCTTTGGCCGAGACTGCCTTGTTCTCAACCAGGGCTATCTCTCAGAGGCAGGGGCTAGCCTGGTGGACCAAAAACTGGAACTCAACATTGTACCACGTACAAAG ctctgactatgaggcatctctcattctttttttttttttccgttttgcagAGGATTCCCGCTCTATTCCAGCCAAAGAATGAAGAACCATATGGGCACTTCAACCCTAAATGGGCCAAATGGCTTCAGAAACTGTGCTGCCCCTCCTGTTTTGGCCGAGGT---CTTGTTCTCAACCAGGGTTACCTATCTGAAGCAGGTGCTAGCCTGGTTGACCAAAAGTTAGAACTTAATATTGTATCACAAATGAGGgtgggaagggaattcccaggaactacatacaagtatttttttgaaagtgg Alignment from Spaln_nt2Genome AGAATCGTTGCTGTCTTCAAACCCAAGAATGAAGAGCCATACGGGCACCTTAACCCTAAGTGGACCAAGTGGCTGCAGAAGCTGTGCTGCCCCTGCTGCTTTGGCCGAGACTGCCTTGTTCTCAACCAGGGCTATCTCTCAGAGGCAGGGGCTAGCCTGGTGGACCAAAAACTGGAACTCAACATTGTACCACGTACAAAG ctctgactatgaggcatctctcattctttttttttttttccgttttgcagAGGATTCCCGCTCTATTCCAGCCAAAGAATGAAGAACCATATGGGCACTTCAACCCTAAATGGGCCAAATGGCTTCAGAAACTGTGCTGCCCCTCCTGTTTTGGCCGAG---GTCTTGTTCTCAACCAGGGTTACCTATCTGAAGCAGGTGCTAGCCTGGTTGACCAAAAGTTAGAACTTAATATTGTATCACAAATGAGGgtgggaagggaattcccaggaactacatacaagtatttttttgaaagtgg Alignment from Pairagon AGAATCGTTGCTGTCTTCAAACCCAAGAATGAAGAGCCATACGGGCACCTTAACCCTAAGTGGACCAAGTGGCTGCAGAAGCTGTGCTGCCCCTGCTGCTTTGGCCGAGACTGCCTTGTTCTCAACCAGGGCTATCTCTCAGAGGCAGGGGCTAGCCTGGTGGACCAAAAACTGGAACTCAACATTGTACCACGTACAAAG ctctgactatgaggcatctctcattctttttttttttttccgttttgcagAGGATTCCCGCTCTATTCCAGCCAAAGAATGAAGAACCATATGGGCACTTCAACCCTAAATGGGCCAAATGGCTTCAGAAACTGTGCTGCCCCTCCTGTTTTGGCCGAG---GTCTTGTTCTCAACCAGGGTTACCTATCTGAAGCAGGTGCTAGCCTGGTTGACCAAAAGTTAGAACTTAATATTGTATCACAAATGAGGgtgggaagggaattcccaggaactacatacaagtatttttttgaaagtgg Alignment from Exonerate_protein2genome AGAATCGTTGCTGTCTTCAAACCCAAGAATGAAGAGCCATACGGGCACCTTAACCCTAAGTGGACCAAGTGGCTGCAGAAGCTGTGCTGCCCCTGCTGCTTTGGCCGAGACTGCCTTGTTCTCAACCAGGGCTATCTCTCAGAGGCAGGGGCTAGCCTGGTGGACCAAAAACTGGAACTCAACATTGTACCACGTACAAAG ctctgactatgaggcatctctcattctttttttttttttccgttttgcagAGGATTCCCGCTCTATTCCAGCCAAAGAATGAAGAACCATATGGGCACTTCAACCCTAAATGGGCCAAATGGCTTCAGAAACTGTGCTGCCCCTCCTGTTTTGGCCGAGGT---CTTGTTCTCAACCAGGGTTACCTATCTGAAGCAGGTGCTAGCCTGGTTGACCAAAAGTTAGAACTTAATATTGTATCACAAATGAGGgtgggaagggaattcccaggaactacatacaagtatttttttgaaagtgg Alignment from Exonerate_coding2genome AGAATCGTTGCTGTCTTCAAACCCAAGAATGAAGAGCCATACGGGCACCTTAACCCTAAGTGGACCAAGTGGCTGCAGAAGCTGTGCTGCCCCTGCTGCTTTGGCCGAGACTGCCTTGTTCTCAACCAGGGCTATCTCTCAGAGGCAGGGGCTAGCCTGGTGGACCAAAAACTGGAACTCAACATTGTACCACGTACAAAG ctctgactatgaggcatctctcattctttttttttttttccgttttgcagAGGATTCCCGCTCTATTCCAGCCAAAGAATGAAGAACCATATGGGCACTTCAACCCTAAATGGGCCAAATGGCTTCAGAAACTGTGCTGCCCCTCCTGTTTTGGCCGAGGT---CTTGTTCTCAACCAGGGTTACCTATCTGAAGCAGGTGCTAGCCTGGTTGACCAAAAGTTAGAACTTAATATTGTATCACAAATGAGGgtgggaagggaattcccaggaactacatacaagtatttttttgaaagtgg Alignment from GeneWise AGAATCGTTGCTGTCTTCAAACCCAAGAATGAAGAGCCATACGGGCACCTTAACCCTAAGTGGACCAAGTGGCTGCAGAAGCTGTGCTGCCCCTGCTGCTTTGGCCGAGACTGCCTTGTTCTCAACCAGGGCTATCTCTCAGAGGCAGGGGCTAGCCTGGTGGACCAAAAACTGGAACTCAACATTGTACCACGTACAAAG ctctgactatgaggcatctctcattctttttttttttttccgttttgcagAGGATTCCCGCTCTATTCCAGCCAAAGAATGAAGAACCATATGGGCACTTCAACCCTAAATGGGCCAAATGGCTTCAGAAACTGTGCTGCCCCTCCTGTTTTGGCCGAGGT---CTTGTTCTCAACCAGGGTTACCTATCTGAAGCAGGTGCTAGCCTGGTTGACCAAAAGTTAGAACTTAATATTGTATCACAAATGAGGgtgggaagggaattcccaggaactacatacaagtatttttttgaaagtgg #### Pik3ap1_ID8155_14 --> 2 - 1 Original Alignment acCTGGAGATCACAGTCCCAATCCGACATTCACAGCACCTGCCAGAGAAAGTGGAGTTTGGCGTGTATGAGAGCGGCCCCAGGAAGAGTGTCTTGCCGGCCAGGACAGAGCTGAGACGTGGGGACTGGAAAACGGACAGCATGTCCAGCACAGCAa ctagctggggaataggataacaatgagttcatgcgctatctcatcctcagatCTTGAAATCACAGTATCCATCAGACATTTACAGTACCTACCAGAGAAAGTGGAATTTGGTGTGTATGAGAGTGGTCCAAGGAAAAGTGTTTTGCCAGCTACAACAGAGTTAAGACGTGGGGATTGGAAAATGGATAGCATGTCCACCACAGCAagtaaagtaggaagcttggcacactcctatgtaacgaaagttcccatgtac Alignment from CESAR acCTGGAGATCACAGTCCCAATCCGACATTCACAGCACCTGCCAGAGAAAGTGGAGTTTGGCGTGTATGAGAGCGGCCCCAGGAAGAGTGTCTTGCCGGCCAGGACAGAGCTGAGACGTGGGGACTGGAAAACGGACAGCATGTCCAGCACAGCAa ctagctggggaataggataacaatgagttcatgcgctatctcatcctcagatCTTGAAATCACAGTATCCATCAGACATTTACAGTACCTACCAGAGAAAGTGGAATTTGGTGTGTATGAGAGTGGTCCAAGGAAAAGTGTTTTGCCAGCTACAACAGAGTTAAGACGTGGGGATTGGAAAATGGATAGCATGTCCACCACAGCAagtaaagtaggaagcttggcacactcctatgtaacgaaagttcccatgtac Alignment from Spaln_aa2Genome ACCTGGAGATCACAGTCCCAATCCGACATTCACAGCACCTGCCAGAGAAAGTGGAGTTTGGCGTGTATGAGAGCGGCCCCAGGAAGAGTGTCTTGCCGGCCAGGACAGAGCTGAGACGTGGGGACTGGAAAACGGACAGCATGTCCAGCACAGCAA ctagctggggaataggataacaatgagttcatgcgctatctcatcctcagATCTTGAAATCACAGTATCCATCAGACATTTACAGTACCTACCAGAGAAAGTGGAATTTGGTGTGTATGAGAGTGGTCCAAGGAAAAGTGTTTTGCCAGCTACAACAGAGTTAAGACGTGGGGATTGGAAAATGGATAGCATGTCCACCACAGCAAgtaaagtaggaagcttggcacactcctatgtaacgaaagttcccatgtac Alignment from Spaln_nt2Genome ACCTGGAGATCACAGTCCCAATCCGACATTCACAGCACCTGCCAGAGAAAGTGGAGTTTGGCGTGTATGAGAGCGGCCCCAGGAAGAGTGTCTTGCCGGCCAGGACAGAGCTGAGACGTGGGGACTGGAAAACGGACAGCATGTCCAGCACAGCAA ctagctggggaataggataacaatgagttcatgcgctatctcatcctcagATCTTGAAATCACAGTATCCATCAGACATTTACAGTACCTACCAGAGAAAGTGGAATTTGGTGTGTATGAGAGTGGTCCAAGGAAAAGTGTTTTGCCAGCTACAACAGAGTTAAGACGTGGGGATTGGAAAATGGATAGCATGTCCACCACAGCAAgtaaagtaggaagcttggcacactcctatgtaacgaaagttcccatgtac Alignment from Pairagon ACCTGGAGATCACAGTCCCAATCCGACATTCACAGCACCTGCCAGAGAAAGTGGAGTTTGGCGTGTATGAGAGCGGCCCCAGGAAGAGTGTCTTGCCGGCCAGGACAGAGCTGAGACGTGGGGACTGGAAAACGGACAGCATGTCCAGCACAGCAA ctagctggggaataggataacaatgagttcatgcgctatctcatcctcagATCTTGAAATCACAGTATCCATCAGACATTTACAGTACCTACCAGAGAAAGTGGAATTTGGTGTGTATGAGAGTGGTCCAAGGAAAAGTGTTTTGCCAGCTACAACAGAGTTAAGACGTGGGGATTGGAAAATGGATAGCATGTCCACCACAGCAAgtaaagtaggaagcttggcacactcctatgtaacgaaagttcccatgtac Alignment from Exonerate_protein2genome ACCTGGAGATCACAGTCCCAATCCGACATTCACAGCACCTGCCAGAGAAAGTGGAGTTTGGCGTGTATGAGAGCGGCCCCAGGAAGAGTGTCTTGCCGGCCAGGACAGAGCTGAGACGTGGGGACTGGAAAACGGACAGCATGTCCAGCACAGCAA ctagctggggaataggataacaatgagttcatgcgctatctcatcctcagATCTTGAAATCACAGTATCCATCAGACATTTACAGTACCTACCAGAGAAAGTGGAATTTGGTGTGTATGAGAGTGGTCCAAGGAAAAGTGTTTTGCCAGCTACAACAGAGTTAAGACGTGGGGATTGGAAAATGGATAGCATGTCCACCACAGCAAgtaaagtaggaagcttggcacactcctatgtaacgaaagttcccatgtac Alignment from Exonerate_coding2genome ACCTGGAGATCACAGTCCCAATCCGACATTCACAGCACCTGCCAGAGAAAGTGGAGTTTGGCGTGTATGAGAGCGGCCCCAGGAAGAGTGTCTTGCCGGCCAGGACAGAGCTGAGACGTGGGGACTGGAAAACGGACAGCATGTCCAGCACAGCAA ctagctggggaataggataacaatgagttcatgcgctatctcatcctcagATCTTGAAATCACAGTATCCATCAGACATTTACAGTACCTACCAGAGAAAGTGGAATTTGGTGTGTATGAGAGTGGTCCAAGGAAAAGTGTTTTGCCAGCTACAACAGAGTTAAGACGTGGGGATTGGAAAATGGATAGCATGTCCACCACAGCAAgtaaagtaggaagcttggcacactcctatgtaacgaaagttcccatgtac Alignment from GeneWise ACCTGGAGATCACAGTCCCAATCCGACATTCACAGCACCTGCCAGAGAAAGTGGAGTTTGGCGTGTATGAGAGCGGCCCCAGGAAGAGTGTCTTGCCGGCCAGGACAGAGCTGAGACGTGGGGACTGGAAAACGGACAGCATGTCCAGCACAGCAA ctagctggggaataggataacaatgagttcatgcgctatctcatcctcagATCTTGAAATCACAGTATCCATCAGACATTTACAGTACCTACCAGAGAAAGTGGAATTTGGTGTGTATGAGAGTGGTCCAAGGAAAAGTGTTTTGCCAGCTACAACAGAGTTAAGACGTGGGGATTGGAAAATGGATAGCATGTCCACCACAGCAAgtaaagtaggaagcttggcacactcctatgtaacgaaagttcccatgtac #### Pik3ap1_ID8160_9 --> 2 - 1 Original Alignment atGTTGAAATGCTTCAGGCCAGTGCAGGTAACCCAGTCTCGGGAGAAAGTTTCTCTCGGCCCACTAAAGACTCGATGATCCGCAAGTTTCTAGAAg gcagtgtcttctgtggcatgacaacttgtcctcgctctcttcccccgcagatTGTGAGATGCTTCAGGCCAGTGCTGGTAACCCAATTTCAGGGGAAAGCTTTTCCCGACCCACCAAAGACTCAATGATTTGCAAGTTTCTAGAAggtaaattatcatcaattgggaaagtacatacacttgtgattcaggtggtt Alignment from CESAR atGTTGAAATGCTTCAGGCCAGTGCAGGTAACCCAGTCTCGGGAGAAAGTTTCTCTCGGCCCACTAAAGACTCGATGATCCGCAAGTTTCTAGAAg gcagtgtcttctgtggcatgacaacttgtcctcgctctcttcccccgcagatTGTGAGATGCTTCAGGCCAGTGCTGGTAACCCAATTTCAGGGGAAAGCTTTTCCCGACCCACCAAAGACTCAATGATTTGCAAGTTTCTAGAAggtaaattatcatcaattgggaaagtacatacacttgtgattcaggtggtt Alignment from Spaln_aa2Genome ATGTTGAAATGCTTCAGGCCAGTGCAGGTAACCCAGTCTCGGGAGAAAGTTTCTCTCGGCCCACTAAAGACTCGATGATCCGCAAGTTTCTAGAAG gcagtgtcttctgtggcatgacaacttgtcctcgctctcttcccccgcagATTGTGAGATGCTTCAGGCCAGTGCTGGTAACCCAATTTCAGGGGAAAGCTTTTCCCGACCCACCAAAGACTCAATGATTTGCAAGTTTCTAGAAGgtaaattatcatcaattgggaaagtacatacacttgtgattcaggtggtt Alignment from Spaln_nt2Genome ATGTTGAAATGCTTCAGGCCAGTGCAGGTAACCCAGTCTCGGGAGAAAGTTTCTCTCGGCCCACTAAAGACTCGATGATCCGCAAGTTTCTAGAAG gcagtgtcttctgtggcatgacaacttgtcctcgctctcttcccccgcagATTGTGAGATGCTTCAGGCCAGTGCTGGTAACCCAATTTCAGGGGAAAGCTTTTCCCGACCCACCAAAGACTCAATGATTTGCAAGTTTCTAGAAGgtaaattatcatcaattgggaaagtacatacacttgtgattcaggtggtt Alignment from Pairagon ATGTTGAAATGCTTCAGGCCAGTGCAGGTAACCCAGTCTCGGGAGAAAGTTTCTCTCGGCCCACTAAAGACTCGATGATCCGCAAGTTTCTAGAAG gcagtgtcttctgtggcatgacaacttgtcctcgctctcttcccccgcagATTGTGAGATGCTTCAGGCCAGTGCTGGTAACCCAATTTCAGGGGAAAGCTTTTCCCGACCCACCAAAGACTCAATGATTTGCAAGTTTCTAGAAGgtaaattatcatcaattgggaaagtacatacacttgtgattcaggtggtt Alignment from Exonerate_protein2genome ATGTTGAAATGCTTCAGGCCAGTGCAGGTAACCCAGTCTCGGGAGAAAGTTTCTCTCGGCCCACTAAAGACTCGATGATCCGCAAGTTTCTAGAAG gcagtgtcttctgtggcatgacaacttgtcctcgctctcttcccccgcagATTGTGAGATGCTTCAGGCCAGTGCTGGTAACCCAATTTCAGGGGAAAGCTTTTCCCGACCCACCAAAGACTCAATGATTTGCAAGTTTCTAGAAGgtaaattatcatcaattgggaaagtacatacacttgtgattcaggtggtt Alignment from Exonerate_coding2genome ATGTTGAAATGCTTCAGGCCAGTGCAGGTAACCCAGTCTCGGGAGAAAGTTTCTCTCGGCCCACTAAAGACTCGATGATCCGCAAGTTTCTAGAAG gcagtgtcttctgtggcatgacaacttgtcctcgctctcttcccccgcagATTGTGAGATGCTTCAGGCCAGTGCTGGTAACCCAATTTCAGGGGAAAGCTTTTCCCGACCCACCAAAGACTCAATGATTTGCAAGTTTCTAGAAGgtaaattatcatcaattgggaaagtacatacacttgtgattcaggtggtt Alignment from GeneWise ATGTTGAAATGCTTCAGGCCAGTGCAGGTAACCCAGTCTCGGGAGAAAGTTTCTCTCGGCCCACTAAAGACTCGATGATCCGCAAGTTTCTAGAAG gcagtgtcttctgtggcatgacaacttgtcctcgctctcttcccccgcagATTGTGAGATGCTTCAGGCCAGTGCTGGTAACCCAATTTCAGGGGAAAGCTTTTCCCGACCCACCAAAGACTCAATGATTTGCAAGTTTCTAGAAGgtaaattatcatcaattgggaaagtacatacacttgtgattcaggtggtt #### Pik3ap1_ID8164_5 --> 2 - 0 Original Alignment acCTCTCCTCGGGGAATGTTTCTCTGAAGGTCTATTCTGGGGACCTGGTGGTCTGCGAAACCACCGTCAGCTATTATACCGACATGGAGGAAATTGGGAACTTACTGTCGAGTGCTGCAAATCCTGTGGAGTTTATGTGTCAG gtacccttttatagggcacctgctattcctgtttgtacttttccctgtagacCTCTCCTCAGGGAATGTCTCTCTAAAGCTATATTCTGGAGACCTGGTGGTCTGTGAAACAACTGTCAGTTACTATACTGATATGGAAGAGATTGGGAACTTGCTTTCAAGCCCTGCAAATCCAGTGGAGTTAATGTGTCAGgtaagagcagaccaaagtcaatccgactcaacaccaacaacggcaacaca Alignment from CESAR acCTCTCCTCGGGGAATGTTTCTCTGAAGGTCTATTCTGGGGACCTGGTGGTCTGCGAAACCACCGTCAGCTATTATACCGACATGGAGGAAATTGGGAACTTACTGTCGAGTGCTGCAAATCCTGTGGAGTTTATGTGTCAG gtacccttttatagggcacctgctattcctgtttgtacttttccctgtagacCTCTCCTCAGGGAATGTCTCTCTAAAGCTATATTCTGGAGACCTGGTGGTCTGTGAAACAACTGTCAGTTACTATACTGATATGGAAGAGATTGGGAACTTGCTTTCAAGCCCTGCAAATCCAGTGGAGTTAATGTGTCAGgtaagagcagaccaaagtcaatccgactcaacaccaacaacggcaacaca Alignment from Spaln_aa2Genome ACCTCTCCTCGGGGAATGTTTCTCTGAAGGTCTATTCTGGGGACCTGGTGGTCTGCGAAACCACCGTCAGCTATTATACCGACATGGAGGAAATTGGGAACTTACTGTCGAGTGCTGCAAATCCTGTGGAGTTTATGTGTCAG gtacccttttatagggcacctgctattcctgtttgtacttttccctgtagACCTCTCCTCAGGGAATGTCTCTCTAAAGCTATATTCTGGAGACCTGGTGGTCTGTGAAACAACTGTCAGTTACTATACTGATATGGAAGAGATTGGGAACTTGCTTTCAAGCCCTGCAAATCCAGTGGAGTTAATGTGTCAGgtaagagcagaccaaagtcaatccgactcaacaccaacaacggcaacaca Alignment from Spaln_nt2Genome ACCTCTCCTCGGGGAATGTTTCTCTGAAGGTCTATTCTGGGGACCTGGTGGTCTGCGAAACCACCGTCAGCTATTATACCGACATGGAGGAAATTGGGAACTTACTGTCGAGTGCTGCAAATCCTGTGGAGTTTATGTGTCAG gtacccttttatagggcacctgctattcctgtttgtacttttccctgtagACCTCTCCTCAGGGAATGTCTCTCTAAAGCTATATTCTGGAGACCTGGTGGTCTGTGAAACAACTGTCAGTTACTATACTGATATGGAAGAGATTGGGAACTTGCTTTCAAGCCCTGCAAATCCAGTGGAGTTAATGTGTCAGgtaagagcagaccaaagtcaatccgactcaacaccaacaacggcaacaca Alignment from Pairagon ACCTCTCCTCGGGGAATGTTTCTCTGAAGGTCTATTCTGGGGACCTGGTGGTCTGCGAAACCACCGTCAGCTATTATACCGACATGGAGGAAATTGGGAACTTACTGTCGAGTGCTGCAAATCCTGTGGAGTTTATGTGTCAG gtacccttttatagggcacctgctattcctgtttgtacttttccctgtagACCTCTCCTCAGGGAATGTCTCTCTAAAGCTATATTCTGGAGACCTGGTGGTCTGTGAAACAACTGTCAGTTACTATACTGATATGGAAGAGATTGGGAACTTGCTTTCAAGCCCTGCAAATCCAGTGGAGTTAATGTGTCAGgtaagagcagaccaaagtcaatccgactcaacaccaacaacggcaacaca Alignment from Exonerate_protein2genome ACCTCTCCTCGGGGAATGTTTCTCTGAAGGTCTATTCTGGGGACCTGGTGGTCTGCGAAACCACCGTCAGCTATTATACCGACATGGAGGAAATTGGGAACTTACTGTCGAGTGCTGCAAATCCTGTGGAGTTTATGTGTCAG gtacccttttatagggcacctgctattcctgtttgtacttttccctgtagACCTCTCCTCAGGGAATGTCTCTCTAAAGCTATATTCTGGAGACCTGGTGGTCTGTGAAACAACTGTCAGTTACTATACTGATATGGAAGAGATTGGGAACTTGCTTTCAAGCCCTGCAAATCCAGTGGAGTTAATGTGTCAGgtaagagcagaccaaagtcaatccgactcaacaccaacaacggcaacaca Alignment from Exonerate_coding2genome ACCTCTCCTCGGGGAATGTTTCTCTGAAGGTCTATTCTGGGGACCTGGTGGTCTGCGAAACCACCGTCAGCTATTATACCGACATGGAGGAAATTGGGAACTTACTGTCGAGTGCTGCAAATCCTGTGGAGTTTATGTGTCAG gtacccttttatagggcacctgctattcctgtttgtacttttccctgtagACCTCTCCTCAGGGAATGTCTCTCTAAAGCTATATTCTGGAGACCTGGTGGTCTGTGAAACAACTGTCAGTTACTATACTGATATGGAAGAGATTGGGAACTTGCTTTCAAGCCCTGCAAATCCAGTGGAGTTAATGTGTCAGgtaagagcagaccaaagtcaatccgactcaacaccaacaacggcaacaca Alignment from GeneWise ACCTCTCCTCGGGGAATGTTTCTCTGAAGGTCTATTCTGGGGACCTGGTGGTCTGCGAAACCACCGTCAGCTATTATACCGACATGGAGGAAATTGGGAACTTACTGTCGAGTGCTGCAAATCCTGTGGAGTTTATGTGT----------------------------------------------------- gtacccttttatagggcacctgctattcctgtttgtacttttccctgtagACCTCTCCTCAGGGAATGTCTCTCTAAAGCTATATTCTGGAGACCTGGTGGTCTGTGAAACAACTGTCAGTTACTATACTGATATGGAAGAGATTGGGAACTTGCTTTCAAGCCCTGCAAATCCAGTGGAGTTAATGTGTCAGGTAAGAGCAGACCAAAGTCAATCCGACTCAACACCAACAACGGCAACACA #### Pik3ap1_ID8173_2 --> 2 - 1 Original Alignment ggTGGGGCCGGGGATGCGACATCCTCATCTTCTACAGCCCAGATGCGGAGGAATGGTGTCAGTACCTACAGGATCTTTTCGTGTCCTGCCGGCAGGTTCGTAGCCAGAAGACGCAGACATACCGGCTGGTCCCGGATGCCTCTTTCTCTGCCCAGGACCTGTGGGTCTTCAGGGATGCGCGATGCGTGCTGGTGCTACTGTCGGCGGGGCTGGTAGGATGCTTCGGCCAGCCAGGACTGCTGCCAATGCTGCAGCGTGCCTGCCATCCGCCGCAGCGTGTGGTGCGGCTGTTGTGTGGAGTGCAGCCAGGCGACGAGGACTTCCAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAAATGACTTGTGATGATGAGCCAGAGACCTACCTGGCGGCTGTGAGGAAGGCCATTTCTGAAg ttggatgatccggtgtaggtaagctcattgacctctgtatctcctgccagggTGGGGCCGGGGATGTGACATCCTCATCTTCTACAGCCCAGATGCCGAAGAATGGTGTCAATACCTACAGGATCTTTTTGTTTCCTGCCGGCAGGTGCGTAGTCAGAAGATACAGACATATGAA------CCTGATGCTTCTTTCCCTGCCCAGGACTTGTGGGTCTGTAGGGACACACAATGTGTGCTGGTGCTTCTATCAGTAGGGCATGTAGGATGTTTCAGCCAGGCAGAGTTGCTCACAATGCGGCAGTGTGCTTGTCATCCACCTCAGCGTGTGGTGCGGCTACTATGCGGCGTATTGTCAGGA---GAGGACTTACAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAGATGGCTTGTGATGATGAACCGGAAACATATCTGGCACCGGTGAGAAAGGCTATTTCTGAAggtaggtactacagcacttcagtaaaaagttcaatatcaattactgaacca Alignment from CESAR ggTGGGGCCGGGGATGCGACATCCTCATCTTCTACAGCCCAGATGCGGAGGAATGGTGTCAGTACCTACAGGATCTTTTCGTGTCCTGCCGGCAGGTTCGTAGCCAGAAGACGCAGACATACCGGCTGGTCCCGGATGCCTCTTTCTCTGCCCAGGACCTGTGGGTCTTCAGGGATGCGCGATGCGTGCTGGTGCTACTGTCGGCGGGGCTGGTAGGATGCTTCGGCCAGCCAGGACTGCTGCCAATGCTGCAGCGTGCCTGCCATCCGCCGCAGCGTGTGGTGCGGCTGTTGTGTGGAGTGCAGCCAGGCGACGAGGACTTCCAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAAATGACTTGTGATGATGAGCCAGAGACCTACCTGGCGGCTGTGAGGAAGGCCATTTCTGAAg ttggatgatccggtgtaggtaagctcattgacctctgtatctcctgccagggTGGGGCCGGGGATGTGACATCCTCATCTTCTACAGCCCAGATGCCGAAGAATGGTGTCAATACCTACAGGATCTTTTTGTTTCCTGCCGGCAGGTGCGTAGTCAGAAGATACAGACATATGAA------CCTGATGCTTCTTTCCCTGCCCAGGACTTGTGGGTCTGTAGGGACACACAATGTGTGCTGGTGCTTCTATCAGTAGGGCATGTAGGATGTTTCAGCCAGGCAGAGTTGCTCACAATGCGGCAGTGTGCTTGTCATCCACCTCAGCGTGTGGTGCGGCTACTATGCGGCGTATTGTCAGGA---GAGGACTTACAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAGATGGCTTGTGATGATGAACCGGAAACATATCTGGCACCGGTGAGAAAGGCTATTTCTGAAggtaggtactacagcacttcagtaaaaagttcaatatcaattactgaacca Alignment from Spaln_aa2Genome GGTGGGGCCGGGGATGCGACATCCTCATCTTCTACAGCCCAGATGCGGAGGAATGGTGTCAGTACCTACAGGATCTTTTCGTGTCCTGCCGGCAGGTTCGTAGCCAGAAGACGCAGACATACCGGCTGGTCCCGGATGCCTCTTTCTCTGCCCAGGACCTGTGGGTCTTCAGGGATGCGCGATGCGTGCTGGTGCTACTGTCGGCGGGGCTGGTAGGATGCTTCGGCCAGCCAGGACTGCTGCCAATGCTGCAGCGTGCCTGCCATCCGCCGCAGCGTGTGGTGCGGCTGTTGTGTGGAGTGCAGCCAGGCGACGAGGACTTCCAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAAATGACTTGTGATGATGAGCCAGAGACCTACCTGGCGGCTGTGAGGAAGGCCATTTCTGAAG ttggatgatccggtgtaggtaagctcattgacctctgtatctcctgccagGGTGGGGCCGGGGATGTGACATCCTCATCTTCTACAGCCCAGATGCCGAAGAATGGTGTCAATACCTACAGGATCTTTTTGTTTCCTGCCGGCAGGTGCGTAGTCAGAAGATACAGACATATGAA------CCTGATGCTTCTTTCCCTGCCCAGGACTTGTGGGTCTGTAGGGACACACAATGTGTGCTGGTGCTTCTATCAGTAGGGCATGTAGGATGTTTCAGCCAGGCAGAGTTGCTCACAATGCGGCAGTGTGCTTGTCATCCACCTCAGCGTGTGGTGCGGCTACTATGCGGCGTATTGTCAGGA---GAGGACTTACAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAGATGGCTTGTGATGATGAACCGGAAACATATCTGGCACCGGTGAGAAAGGCTATTTCTGAAGgtaggtactacagcacttcagtaaaaagttcaatatcaattactgaacca Alignment from Spaln_nt2Genome GGTGGGGCCGGGGATGCGACATCCTCATCTTCTACAGCCCAGATGCGGAGGAATGGTGTCAGTACCTACAGGATCTTTTCGTGTCCTGCCGGCAGGTTCGTAGCCAGAAGACGCAGACATACCGGCTGGTCCCGGATGCCTCTTTCTCTGCCCAGGACCTGTGGGTCTTCAGGGATGCGCGATGCGTGCTGGTGCTACTGTCGGCGGGGCTGGTAGGATGCTTCGGCCAGCCAGGACTGCTGCCAATGCTGCAGCGTGCCTGCCATCCGCCGCAGCGTGTGGTGCGGCTGTTGTGTGGAGTGCAGCCAGGCGACGAGGACTTCCAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAAATGACTTGTGATGATGAGCCAGAGACCTACCTGGCGGCTGTGAGGAAGGCCATTTCTGAAG ttggatgatccggtgtaggtaagctcattgacctctgtatctcctgccagGGTGGGGCCGGGGATGTGACATCCTCATCTTCTACAGCCCAGATGCCGAAGAATGGTGTCAATACCTACAGGATCTTTTTGTTTCCTGCCGGCAGGTGCGTAGTCAGAAGATACAGACATA------TGAACCTGATGCTTCTTTCCCTGCCCAGGACTTGTGGGTCTGTAGGGACACACAATGTGTGCTGGTGCTTCTATCAGTAGGGCATGTAGGATGTTTCAGCCAGGCAGAGTTGCTCACAATGCGGCAGTGTGCTTGTCATCCACCTCAGCGTGTGGTGCGGCTACTATGCGGCGTATTGTCAGG---AGAGGACTTACAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAGATGGCTTGTGATGATGAACCGGAAACATATCTGGCACCGGTGAGAAAGGCTATTTCTGAAGgtaggtactacagcacttcagtaaaaagttcaatatcaattactgaacca Alignment from Pairagon CAGGGTGGGGCCGGGGATGCGACATCCTCATCTTCTACAGCCCAGATGCGGAGGAATGGTGTCAGTACCTACAGGATCTTTTCGTGTCCTGCCGGCAGGTTCGTAGCCAGAAGACGCAGACATACCGGCTGGTCCCGGATGCCTCTTTCTCTGCCCAGGACCTGTGGGTCTTCAGGGATGCGCGATGCGTGCTGGTGCTACTGTCGGCGGGGCTGGTAGGATGCTTCGGCCAGCCAGGACTGCTGCCAATGCTGCAGCGTGCCTGCCATCCGCCGCAGCGTGTGGTGCGGCTGTTGTGTGGAGTGCAGCCAGGCGACGAGGACTTCCAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAAATGACTTGTGATGATGAGCCAGAGACCTACCTGGCGGCTGTGAGGAAGGCCATTTCTGAAG ttggatgatccggtgtaggtaagctcattgacctctgtatctcctgcCAGGGTGGGGCCGGGGATGTGACATCCTCATCTTCTACAGCCCAGATGCCGAAGAATGGTGTCAATACCTACAGGATCTTTTTGTTTCCTGCCGGCAGGTGCGTAGTCAGAAGATACAGACATAT------GAACCTGATGCTTCTTTCCCTGCCCAGGACTTGTGGGTCTGTAGGGACACACAATGTGTGCTGGTGCTTCTATCAGTAGGGCATGTAGGATGTTTCAGCCAGGCAGAGTTGCTCACAATGCGGCAGTGTGCTTGTCATCCACCTCAGCGTGTGGTGCGGCTACTATGCGGCGTATTGTCAGG---AGAGGACTTACAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAGATGGCTTGTGATGATGAACCGGAAACATATCTGGCACCGGTGAGAAAGGCTATTTCTGAAGgtaggtactacagcacttcagtaaaaagttcaatatcaattactgaacca Alignment from Exonerate_protein2genome GGGTGGGGCCGGGGATGCGACATCCTCATCTTCTACAGCCCAGATGCGGAGGAATGGTGTCAGTACCTACAGGATCTTTTCGTGTCCTGCCGGCAGGTTCGTAGCCAGAAGACGCAGACATACCGGCTGGTCCCGGATGCCTCTTTCTCTGCCCAGGACCTGTGGGTCTTCAGGGATGCGCGATGCGTGCTGGTGCTACTGTCGGCGGGGCTGGTAGGATGCTTCGGCCAGCCAGGACTGCTGCCAATGCTGCAGCGTGCCTGCCATCCGCCGCAGCGTGTGGTGCGGCTGTTGTGTGGAGTGCAGCCAGGCGACGAGGACTTCCAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAAATGACTTGTGATGATGAGCCAGAGACCTACCTGGCGGCTGTGAGGAAGGCCATTTCTGAAG ttggatgatccggtgtaggtaagctcattgacctctgtatctcctgccaGGGTGGGGCCGGGGATGTGACATCCTCATCTTCTACAGCCCAGATGCCGAAGAATGGTGTCAATACCTACAGGATCTTTTTGTTTCCTGCCGGCAGGTGCGTAGTCAGAAGATACAGACATATGAA------CCTGATGCTTCTTTCCCTGCCCAGGACTTGTGGGTCTGTAGGGACACACAATGTGTGCTGGTGCTTCTATCAGTAGGGCATGTAGGATGTTTCAGCCAGGCAGAGTTGCTCACAATGCGGCAGTGTGCTTGTCATCCACCTCAGCGTGTGGTGCGGCTACTATGCGGCGTATTGTCAGGA---GAGGACTTACAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAGATGGCTTGTGATGATGAACCGGAAACATATCTGGCACCGGTGAGAAAGGCTATTTCTGAAGgtaggtactacagcacttcagtaaaaagttcaatatcaattactgaacca Alignment from Exonerate_coding2genome GGGTGGGGCCGGGGATGCGACATCCTCATCTTCTACAGCCCAGATGCGGAGGAATGGTGTCAGTACCTACAGGATCTTTTCGTGTCCTGCCGGCAGGTTCGTAGCCAGAAGACGCAGACATACCGGCTGGTCCCGGATGCCTCTTTCTCTGCCCAGGACCTGTGGGTCTTCAGGGATGCGCGATGCGTGCTGGTGCTACTGTCGGCGGGGCTGGTAGGATGCTTCGGCCAGCCAGGACTGCTGCCAATGCTGCAGCGTGCCTGCCATCCGCCGCAGCGTGTGGTGCGGCTGTTGTGTGGAGTGCAGCCAGGCGACGAGGACTTCCAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAAATGACTTGTGATGATGAGCCAGAGACCTACCTGGCGGCTGTGAGGAAGGCCATTTCTGAAG ttggatgatccggtgtaggtaagctcattgacctctgtatctcctgccaGGGTGGGGCCGGGGATGTGACATCCTCATCTTCTACAGCCCAGATGCCGAAGAATGGTGTCAATACCTACAGGATCTTTTTGTTTCCTGCCGGCAGGTGCGTAGTCAGAAGATACAGACATATGAA------CCTGATGCTTCTTTCCCTGCCCAGGACTTGTGGGTCTGTAGGGACACACAATGTGTGCTGGTGCTTCTATCAGTAGGGCATGTAGGATGTTTCAGCCAGGCAGAGTTGCTCACAATGCGGCAGTGTGCTTGTCATCCACCTCAGCGTGTGGTGCGGCTACTATGCGGCGTATTGTCAGGA---GAGGACTTACAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAGATGGCTTGTGATGATGAACCGGAAACATATCTGGCACCGGTGAGAAAGGCTATTTCTGAAGgtaggtactacagcacttcagtaaaaagttcaatatcaattactgaacca Alignment from GeneWise GCAGCCTCAGGGTGGGGCCGGGGATGCGACATCCTCATCTTCTACAGCCCAGATGCGGAGGAATGGTGTCAGTACCTACAGGATCTTTTCGTGTCCTGCCGGCAGGTTCGTAGCCAGAAGACGCAGACATACCGGCTGGTCCCGGATGCCTCTTTCTCTGCCCAGGACCTGTGGGTCTTCAGGGATGCGCGATGCGTGCTGGTGCTACTGTCGGCGGGGCTGGTAGGATGCTTCGGCCAGCCAGGACTGCTGCCAATGCTGCAGCGTGCCTGCCATCCGCCGCAGCGTGTGGTGCGGCTGTTGTGTGGAGTGCAGCCAGGCGACGAGGACTTCCAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAAATGACTTGTGATGATGAGCCAGAGACCTACCTGGCGGCTGTGAGGAAGGCCATTTCTGAAG ttggatgatccggtgtaggtaagctcattgacctctgtatCTCCTGCCAGGGTGGGGCCGGGGATGTGACATCCTCATCTTCTACAGCCCAGATGCCGAAGAATGGTGTCAATACCTACAGGATCTTTTTGTTTCCTGCCGGCAGGTGCGTAGTCAGAAGATACAGACATATGAA------CCTGATGCTTCTTTCCCTGCCCAGGACTTGTGGGTCTGTAGGGACACACAATGTGTGCTGGTGCTTCTATCAGTAGGGCATGTAGGATGTTTCAGCCAGGCAGAGTTGCTCACAATGCGGCAGTGTGCTTGTCATCCACCTCAGCGTGTGGTGCGGCTACTATGCGGCGTATTGTCAGGA---GAGGACTTACAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAGATGGCTTGTGATGATGAACCGGAAACATATCTGGCACCGGTGAGAAAGGCTATTTCTGAAGgtaggtactacagcacttcagtaaaaagttcaatatcaattactgaacca #### Pitpnm1_ID308_5 --> 2 - 1 Original Alignment gtCTGCGCAGGGTGATGCTTCGCGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAACTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTCAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCCTGATGGACCTGAGGCCCCTCCCGGCCCCGACGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAg tgcatagcagtgggaactggatgtaaaacatcctcacctctctcttccaggcCTACACAGGGTGATGCTCCGTGCCCATCGTCAGGCCTGGTGTTGGCAGGAAGAGTGGATAGAGCTGAGCATGGCTGATATACGGGCGTTGGAGGAGGAACCCGCACGTATGCTAGCTCAGTGTATGGCTAAATGCAACACTGGCAGTGAGGGACCAGAGGCTAAGACTCCTGGAAAATCTAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCTCTATGGACCTGAGGCTCGCCCTGGCCCTGATGCCTCCCCAGAC---AGTTTTGGCAAGCAGTGGTCCTCTTCTTCCCGATCCTCACATTCGTCACAACATGGAggtgagtattgactgagcacaacaggacattggcaaggcacaagcaccatc Alignment from CESAR gtCTGCGCAGGGTGATGCTTCGCGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAACTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTCAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCCTGATGGACCTGAGGCCCCTCCCGGCCCCGACGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAg tgcatagcagtgggaactggatgtaaaacatcctcacctctctcttccaggcCTACACAGGGTGATGCTCCGTGCCCATCGTCAGGCCTGGTGTTGGCAGGAAGAGTGGATAGAGCTGAGCATGGCTGATATACGGGCGTTGGAGGAGGAACCCGCACGTATGCTAGCTCAGTGTATGGCTAAATGCAACACTGGCAGTGAGGGACCAGAGGCTAAGACTCCTGGAAAATCTAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCTCTATGGACCTGAGGCTCGCCCTGGCCCTGATGCCTCCCCAGAC---AGTTTTGGCAAGCAGTGGTCCTCTTCTTCCCGATCCTCACATTCGTCACAACATGGAggtgagtattgactgagcacaacaggacattggcaaggcacaagcaccatc Alignment from Spaln_aa2Genome GTCTGCGCAGGGTGATGCTTCGCGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAACTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTCAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCCTGATGGACCTGAGGCCCCTCCCGGCCCCGACGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAG tgcatagcagtgggaactggatgtaaaacatcctcacctctctcttccagGCCTACACAGGGTGATGCTCCGTGCCCATCGTCAGGCCTGGTGTTGGCAGGAAGAGTGGATAGAGCTGAGCATGGCTGATATACGGGCGTTGGAGGAGGAACCCGCACGTATGCTAGCTCAGTGTATGGCTAAATGCAACACTGGCAGTGAGGGACCAGAGGCTAAGACTCCTGGAAAATCTAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCTCTATGGACCTGAGGCTCGCCCTGGCCCTGATGCCTCCCCAGAC---AGTTTTGGCAAGCAGTGGTCCTCTTCTTCCCGATCCTCACATTCGTCACAACATGGAGgtgagtattgactgagcacaacaggacattggcaaggcacaagcaccatc Alignment from Spaln_nt2Genome GTCTGCGCAGGGTGATGCTTCGCGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAACTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTCAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCCTGATGGACCTGAGGCCCCTCCCGGCCCCGACGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAG tgcatagcagtgggaactggatgtaaaacatcctcacctctctcttccagGCCTACACAGGGTGATGCTCCGTGCCCATCGTCAGGCCTGGTGTTGGCAGGAAGAGTGGATAGAGCTGAGCATGGCTGATATACGGGCGTTGGAGGAGGAACCCGCACGTATGCTAGCTCAGTGTATGGCTAAATGCAACACTGGCAGTGAGGGACCAGAGGCTAAGACTCCTGGAAAATCTAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCTCTATGGACCTGAGGCTCGCCCTGGCCCTGATGCCTCCCCAGA---CAGTTTTGGCAAGCAGTGGTCCTCTTCTTCCCGATCCTCACATTCGTCACAACATGGAGgtgagtattgactgagcacaacaggacattggcaaggcacaagcaccatc Alignment from Pairagon GTCTGCGCAGGGTGATGCTTCGCGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAACTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTCAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCCTGATGGACCTGAGGCCCCTCCCGGCCCCGACGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAG tgcatagcagtgggaactggatgtaaaacatcctcacctctctcttccagGCCTACACAGGGTGATGCTCCGTGCCCATCGTCAGGCCTGGTGTTGGCAGGAAGAGTGGATAGAGCTGAGCATGGCTGATATACGGGCGTTGGAGGAGGAACCCGCACGTATGCTAGCTCAGTGTATGGCTAAATGCAACACTGGCAGTGAGGGACCAGAGGCTAAGACTCCTGGAAAATCTAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCTCTATGGACCTGAGGCTCGCCCTGGCCCTGATGCCTCCCCAGA---CAGTTTTGGCAAGCAGTGGTCCTCTTCTTCCCGATCCTCACATTCGTCACAACATGGAGgtgagtattgactgagcacaacaggacattggcaaggcacaagcaccatc Alignment from Exonerate_protein2genome GTCTGCGCAGGGTGATGCTTCGCGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAACTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTCAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCCTGATGGACCTGAGGCCCCTCCCGGCCCCGACGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAG tgcatagcagtgggaactggatgtaaaacatcctcacctctctcttccagGCCTACACAGGGTGATGCTCCGTGCCCATCGTCAGGCCTGGTGTTGGCAGGAAGAGTGGATAGAGCTGAGCATGGCTGATATACGGGCGTTGGAGGAGGAACCCGCACGTATGCTAGCTCAGTGTATGGCTAAATGCAACACTGGCAGTGAGGGACCAGAGGCTAAGACTCCTGGAAAATCTAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCTCTATGGACCTGAGGCTCGCCCTGGCCCTGATGCCTCCCCAGAC---AGTTTTGGCAAGCAGTGGTCCTCTTCTTCCCGATCCTCACATTCGTCACAACATGGAGgtgagtattgactgagcacaacaggacattggcaaggcacaagcaccatc Alignment from Exonerate_coding2genome GTCTGCGCAGGGTGATGCTTCGCGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAACTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTCAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCCTGATGGACCTGAGGCCCCTCCCGGCCCCGACGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAG tgcatagcagtgggaactggatgtaaaacatcctcacctctctcttccagGCCTACACAGGGTGATGCTCCGTGCCCATCGTCAGGCCTGGTGTTGGCAGGAAGAGTGGATAGAGCTGAGCATGGCTGATATACGGGCGTTGGAGGAGGAACCCGCACGTATGCTAGCTCAGTGTATGGCTAAATGCAACACTGGCAGTGAGGGACCAGAGGCTAAGACTCCTGGAAAATCTAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCTCTATGGACCTGAGGCTCGCCCTGGCCCTGATGCCTCCCCAGAC---AGTTTTGGCAAGCAGTGGTCCTCTTCTTCCCGATCCTCACATTCGTCACAACATGGAGgtgagtattgactgagcacaacaggacattggcaaggcacaagcaccatc Alignment from GeneWise GTCTGCGCAGGGTGATGCTTCGCGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAACTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTCAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCCTGATGGACCTGAGGCCCCTCCCGGCCCCGACGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAG tgcatagcagtgggaactggatgtaaaacatcctcacctctctcttccagGCCTACACAGGGTGATGCTCCGTGCCCATCGTCAGGCCTGGTGTTGGCAGGAAGAGTGGATAGAGCTGAGCATGGCTGATATACGGGCGTTGGAGGAGGAACCCGCACGTATGCTAGCTCAGTGTATGGCTAAATGCAACACTGGCAGTGAGGGACCAGAGGCTAAGACTCCTGGAAAATCTAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCTCTATGGACCTGAGGCTCGCCCTGGCCCTGATGCCTCCCCAGAC---AGTTTTGGCAAGCAGTGGTCCTCTTCTTCCCGATCCTCACATTCGTCACAACATGGAGgtgagtattgactgagcacaacaggacattggcaaggcacaagcaccatc #### Pitpnm1_ID309_6 --> 2 - 1 Original Alignment gcGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATg tcttcagcttctgaaggcttcttaacatatggctgttcattttcttgtaggtTGTGTATCTCCACAGAGTTTGTCTGAATGGCACATGCAGAACATTGCCCGAGACTCCAAAAACAGCTCTGAGGAAGACTTCTTTGATCCCCATggtgaggaagaaaggcaaaatgtaaagaatgctgtgatgggtgacattaat Alignment from CESAR gcGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATg tcttcagcttctgaaggcttcttaacatatggctgttcattttcttgtaggtTGTGTATCTCCACAGAGTTTGTCTGAATGGCACATGCAGAACATTGCCCGAGACTCCAAAAACAGCTCTGAGGAAGACTTCTTTGATCCCCATggtgaggaagaaaggcaaaatgtaaagaatgctgtgatgggtgacattaat Alignment from Spaln_aa2Genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG tcttcagcttctgaaggcttcttaacatatggctgttcattttcttgtagGTTGTGTATCTCCACAGAGTTTGTCTGAATGGCACATGCAGAACATTGCCCGAGACTCCAAAAACAGCTCTGAGGAAGACTTCTTTGATCCCCATGgtgaggaagaaaggcaaaatgtaaagaatgctgtgatgggtgacattaat Alignment from Spaln_nt2Genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG tcttcagcttctgaaggcttcttaacatatggctgttcattttcttgtagGTTGTGTATCTCCACAGAGTTTGTCTGAATGGCACATGCAGAACATTGCCCGAGACTCCAAAAACAGCTCTGAGGAAGACTTCTTTGATCCCCATGgtgaggaagaaaggcaaaatgtaaagaatgctgtgatgggtgacattaat Alignment from Pairagon GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG tcttcagcttctgaaggcttcttaacatatggctgttcattttcttgtagGTTGTGTATCTCCACAGAGTTTGTCTGAATGGCACATGCAGAACATTGCCCGAGACTCCAAAAACAGCTCTGAGGAAGACTTCTTTGATCCCCATGgtgaggaagaaaggcaaaatgtaaagaatgctgtgatgggtgacattaat Alignment from Exonerate_protein2genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG tcttcagcttctgaaggcttcttaacatatggctgttcattttcttgtagGTTGTGTATCTCCACAGAGTTTGTCTGAATGGCACATGCAGAACATTGCCCGAGACTCCAAAAACAGCTCTGAGGAAGACTTCTTTGATCCCCATGgtgaggaagaaaggcaaaatgtaaagaatgctgtgatgggtgacattaat Alignment from Exonerate_coding2genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG tcttcagcttctgaaggcttcttaacatatggctgttcattttcttgtagGTTGTGTATCTCCACAGAGTTTGTCTGAATGGCACATGCAGAACATTGCCCGAGACTCCAAAAACAGCTCTGAGGAAGACTTCTTTGATCCCCATGgtgaggaagaaaggcaaaatgtaaagaatgctgtgatgggtgacattaat Alignment from GeneWise GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG tcttcagcttctgaaggcttcttaacatatggctgttcattttcttgtagGTTGTGTATCTCCACAGAGTTTGTCTGAATGGCACATGCAGAACATTGCCCGAGACTCCAAAAACAGCTCTGAGGAAGACTTCTTTGATCCCCATGgtgaggaagaaaggcaaaatgtaaagaatgctgtgatgggtgacattaat #### Pitpnm1_ID310_7 --> 2 - 1 Original Alignment aaGGTTTCTCGGACAGTGATGAGGTCTTCCCCAAGGAGATGACCAAGTGGAATTCCAATGATTTTATCGATGCCTTTGCCTCCCCAACCGAGGTGGAGGGGGTACCAg gatgggtgacattaattcatctcaaaatcccctctctttgataattacagatGGGTTCTCAGATAGTGATGTAGTGTTCCCCAAGGAGATGTCCAAGTGGAATTCCAATGATTTTCTTGAAACCTTTGCCCCCCCAACTGAGGTAGAAGGCATACCTggtacagcctaaagctagacctctgattctagatgcaaatatgctgcactt Alignment from CESAR aaGGTTTCTCGGACAGTGATGAGGTCTTCCCCAAGGAGATGACCAAGTGGAATTCCAATGATTTTATCGATGCCTTTGCCTCCCCAACCGAGGTGGAGGGGGTACCAg gatgggtgacattaattcatctcaaaatcccctctctttgataattacagatGGGTTCTCAGATAGTGATGTAGTGTTCCCCAAGGAGATGTCCAAGTGGAATTCCAATGATTTTCTTGAAACCTTTGCCCCCCCAACTGAGGTAGAAGGCATACCTggtacagcctaaagctagacctctgattctagatgcaaatatgctgcactt Alignment from Spaln_aa2Genome AAGGTTTCTCGGACAGTGATGAGGTCTTCCCCAAGGAGATGACCAAGTGGAATTCCAATGATTTTATCGATGCCTTTGCCTCCCCAACCGAGGTGGAGGGGGTACCAG gatgggtgacattaattcatctcaaaatcccctctctttgataattacagATGGGTTCTCAGATAGTGATGTAGTGTTCCCCAAGGAGATGTCCAAGTGGAATTCCAATGATTTTCTTGAAACCTTTGCCCCCCCAACTGAGGTAGAAGGCATACCTGgtacagcctaaagctagacctctgattctagatgcaaatatgctgcactt Alignment from Spaln_nt2Genome AAGGTTTCTCGGACAGTGATGAGGTCTTCCCCAAGGAGATGACCAAGTGGAATTCCAATGATTTTATCGATGCCTTTGCCTCCCCAACCGAGGTGGAGGGGGTACCAG gatgggtgacattaattcatctcaaaatcccctctctttgataattacagATGGGTTCTCAGATAGTGATGTAGTGTTCCCCAAGGAGATGTCCAAGTGGAATTCCAATGATTTTCTTGAAACCTTTGCCCCCCCAACTGAGGTAGAAGGCATACCTGgtacagcctaaagctagacctctgattctagatgcaaatatgctgcactt Alignment from Pairagon AAGGTTTCTCGGACAGTGATGAGGTCTTCCCCAAGGAGATGACCAAGTGGAATTCCAATGATTTTATCGATGCCTTTGCCTCCCCAACCGAGGTGGAGGGGGTACCAG gatgggtgacattaattcatctcaaaatcccctctctttgataattacagATGGGTTCTCAGATAGTGATGTAGTGTTCCCCAAGGAGATGTCCAAGTGGAATTCCAATGATTTTCTTGAAACCTTTGCCCCCCCAACTGAGGTAGAAGGCATACCTGgtacagcctaaagctagacctctgattctagatgcaaatatgctgcactt Alignment from Exonerate_protein2genome AAGGTTTCTCGGACAGTGATGAGGTCTTCCCCAAGGAGATGACCAAGTGGAATTCCAATGATTTTATCGATGCCTTTGCCTCCCCAACCGAGGTGGAGGGGGTACCAG gatgggtgacattaattcatctcaaaatcccctctctttgataattacagATGGGTTCTCAGATAGTGATGTAGTGTTCCCCAAGGAGATGTCCAAGTGGAATTCCAATGATTTTCTTGAAACCTTTGCCCCCCCAACTGAGGTAGAAGGCATACCTGgtacagcctaaagctagacctctgattctagatgcaaatatgctgcactt Alignment from Exonerate_coding2genome AAGGTTTCTCGGACAGTGATGAGGTCTTCCCCAAGGAGATGACCAAGTGGAATTCCAATGATTTTATCGATGCCTTTGCCTCCCCAACCGAGGTGGAGGGGGTACCAG gatgggtgacattaattcatctcaaaatcccctctctttgataattacagATGGGTTCTCAGATAGTGATGTAGTGTTCCCCAAGGAGATGTCCAAGTGGAATTCCAATGATTTTCTTGAAACCTTTGCCCCCCCAACTGAGGTAGAAGGCATACCTGgtacagcctaaagctagacctctgattctagatgcaaatatgctgcactt Alignment from GeneWise AAGGTTTCTCGGACAGTGATGAGGTCTTCCCCAAGGAGATGACCAAGTGGAATTCCAATGATTTTATCGATGCCTTTGCCTCCCCAACCGAGGTGGAGGGGGTACCAG gatgggtgacattaattcatctcaaaatcccctctctttgataattacagATGGGTTCTCAGATAGTGATGTAGTGTTCCCCAAGGAGATGTCCAAGTGGAATTCCAATGATTTTCTTGAAACCTTTGCCCCCCCAACTGAGGTAGAAGGCATACCTGgtacagcctaaagctagacctctgattctagatgcaaatatgctgcactt #### Pitpnm1_ID316_13 --> 1 - 1 Original Alignment cCTCCAGGTAGCCTCCACAGCTACCTCCTCTGGGGAGCCCCGCCGTGCAAGCACAGCCTCCTGTCCACCTGCCAGTTCTGAGGCTCCTGACGGCCCCACGAACGCTGCTCGCCTGGACTTCAAGGTCTCAGGCTTCTTCCTCTTTGGCTCCCCACTGGGCCTGGTGCTGGCTCTTCGCAAAACCGTGATGCCCGCCTTGGAGg cagtcctaaaataaaaacctgggcttatgtgaatgttttcttttgcctagcCTGCAGTTAGCAGCAACAGCAACGTCCTCTGGAGAACCATGCCATGCTAGCACATCCTCCTGTCCACCAGCAAGTTCTGAAGCTCATGATGGGCCAACAAATGCTGCTCACCTTGACTTCAGAGTGTCGGGTTTCTTCCTCTTTGGTTCCCCAGTAGGCTTAGTGCTGGCTCTTCGAAAAACTGTGATGTCTGCCTTGGAGggtgagtattaatgctcttagtcttcttatccctcatccacctctgataat Alignment from CESAR cCTCCAGGTAGCCTCCACAGCTACCTCCTCTGGGGAGCCCCGCCGTGCAAGCACAGCCTCCTGTCCACCTGCCAGTTCTGAGGCTCCTGACGGCCCCACGAACGCTGCTCGCCTGGACTTCAAGGTCTCAGGCTTCTTCCTCTTTGGCTCCCCACTGGGCCTGGTGCTGGCTCTTCGCAAAACCGTGATGCCCGCCTTGGAGg cagtcctaaaataaaaacctgggcttatgtgaatgttttcttttgcctagcCTGCAGTTAGCAGCAACAGCAACGTCCTCTGGAGAACCATGCCATGCTAGCACATCCTCCTGTCCACCAGCAAGTTCTGAAGCTCATGATGGGCCAACAAATGCTGCTCACCTTGACTTCAGAGTGTCGGGTTTCTTCCTCTTTGGTTCCCCAGTAGGCTTAGTGCTGGCTCTTCGAAAAACTGTGATGTCTGCCTTGGAGggtgagtattaatgctcttagtcttcttatccctcatccacctctgataat Alignment from Spaln_aa2Genome CCTCCAGGTAGCCTCCACAGCTACCTCCTCTGGGGAGCCCCGCCGTGCAAGCACAGCCTCCTGTCCACCTGCCAGTTCTGAGGCTCCTGACGGCCCCACGAACGCTGCTCGCCTGGACTTCAAGGTCTCAGGCTTCTTCCTCTTTGGCTCCCCACTGGGCCTGGTGCTGGCTCTTCGCAAAACCGTGATGCCCGCCTTGGAGG cagtcctaaaataaaaacctgggcttatgtgaatgttttcttttgcctagCCTGCAGTTAGCAGCAACAGCAACGTCCTCTGGAGAACCATGCCATGCTAGCACATCCTCCTGTCCACCAGCAAGTTCTGAAGCTCATGATGGGCCAACAAATGCTGCTCACCTTGACTTCAGAGTGTCGGGTTTCTTCCTCTTTGGTTCCCCAGTAGGCTTAGTGCTGGCTCTTCGAAAAACTGTGATGTCTGCCTTGGAGGgtgagtattaatgctcttagtcttcttatccctcatccacctctgataat Alignment from Spaln_nt2Genome CCTCCAGGTAGCCTCCACAGCTACCTCCTCTGGGGAGCCCCGCCGTGCAAGCACAGCCTCCTGTCCACCTGCCAGTTCTGAGGCTCCTGACGGCCCCACGAACGCTGCTCGCCTGGACTTCAAGGTCTCAGGCTTCTTCCTCTTTGGCTCCCCACTGGGCCTGGTGCTGGCTCTTCGCAAAACCGTGATGCCCGCCTTGGAGG cagtcctaaaataaaaacctgggcttatgtgaatgttttcttttgcctagCCTGCAGTTAGCAGCAACAGCAACGTCCTCTGGAGAACCATGCCATGCTAGCACATCCTCCTGTCCACCAGCAAGTTCTGAAGCTCATGATGGGCCAACAAATGCTGCTCACCTTGACTTCAGAGTGTCGGGTTTCTTCCTCTTTGGTTCCCCAGTAGGCTTAGTGCTGGCTCTTCGAAAAACTGTGATGTCTGCCTTGGAGGgtgagtattaatgctcttagtcttcttatccctcatccacctctgataat Alignment from Pairagon CCTCCAGGTAGCCTCCACAGCTACCTCCTCTGGGGAGCCCCGCCGTGCAAGCACAGCCTCCTGTCCACCTGCCAGTTCTGAGGCTCCTGACGGCCCCACGAACGCTGCTCGCCTGGACTTCAAGGTCTCAGGCTTCTTCCTCTTTGGCTCCCCACTGGGCCTGGTGCTGGCTCTTCGCAAAACCGTGATGCCCGCCTTGGAGG cagtcctaaaataaaaacctgggcttatgtgaatgttttcttttgcctagCCTGCAGTTAGCAGCAACAGCAACGTCCTCTGGAGAACCATGCCATGCTAGCACATCCTCCTGTCCACCAGCAAGTTCTGAAGCTCATGATGGGCCAACAAATGCTGCTCACCTTGACTTCAGAGTGTCGGGTTTCTTCCTCTTTGGTTCCCCAGTAGGCTTAGTGCTGGCTCTTCGAAAAACTGTGATGTCTGCCTTGGAGGgtgagtattaatgctcttagtcttcttatccctcatccacctctgataat Alignment from Exonerate_protein2genome CCTCCAGGTAGCCTCCACAGCTACCTCCTCTGGGGAGCCCCGCCGTGCAAGCACAGCCTCCTGTCCACCTGCCAGTTCTGAGGCTCCTGACGGCCCCACGAACGCTGCTCGCCTGGACTTCAAGGTCTCAGGCTTCTTCCTCTTTGGCTCCCCACTGGGCCTGGTGCTGGCTCTTCGCAAAACCGTGATGCCCGCCTTGGAGG cagtcctaaaataaaaacctgggcttatgtgaatgttttcttttgcctagCCTGCAGTTAGCAGCAACAGCAACGTCCTCTGGAGAACCATGCCATGCTAGCACATCCTCCTGTCCACCAGCAAGTTCTGAAGCTCATGATGGGCCAACAAATGCTGCTCACCTTGACTTCAGAGTGTCGGGTTTCTTCCTCTTTGGTTCCCCAGTAGGCTTAGTGCTGGCTCTTCGAAAAACTGTGATGTCTGCCTTGGAGGgtgagtattaatgctcttagtcttcttatccctcatccacctctgataat Alignment from Exonerate_coding2genome CCTCCAGGTAGCCTCCACAGCTACCTCCTCTGGGGAGCCCCGCCGTGCAAGCACAGCCTCCTGTCCACCTGCCAGTTCTGAGGCTCCTGACGGCCCCACGAACGCTGCTCGCCTGGACTTCAAGGTCTCAGGCTTCTTCCTCTTTGGCTCCCCACTGGGCCTGGTGCTGGCTCTTCGCAAAACCGTGATGCCCGCCTTGGAGG cagtcctaaaataaaaacctgggcttatgtgaatgttttcttttgcctagCCTGCAGTTAGCAGCAACAGCAACGTCCTCTGGAGAACCATGCCATGCTAGCACATCCTCCTGTCCACCAGCAAGTTCTGAAGCTCATGATGGGCCAACAAATGCTGCTCACCTTGACTTCAGAGTGTCGGGTTTCTTCCTCTTTGGTTCCCCAGTAGGCTTAGTGCTGGCTCTTCGAAAAACTGTGATGTCTGCCTTGGAGGgtgagtattaatgctcttagtcttcttatccctcatccacctctgataat Alignment from GeneWise CCTCCAGGTAGCCTCCACAGCTACCTCCTCTGGGGAGCCCCGCCGTGCAAGCACAGCCTCCTGTCCACCTGCCAGTTCTGAGGCTCCTGACGGCCCCACGAACGCTGCTCGCCTGGACTTCAAGGTCTCAGGCTTCTTCCTCTTTGGCTCCCCACTGGGCCTGGTGCTGGCTCTTCGCAAAACCGTGATGCCCGCCTTGGAGG cagtcctaaaataaaaacctgggcttatgtgaatgttttcttttgcctagCCTGCAGTTAGCAGCAACAGCAACGTCCTCTGGAGAACCATGCCATGCTAGCACATCCTCCTGTCCACCAGCAAGTTCTGAAGCTCATGATGGGCCAACAAATGCTGCTCACCTTGACTTCAGAGTGTCGGGTTTCTTCCTCTTTGGTTCCCCAGTAGGCTTAGTGCTGGCTCTTCGAAAAACTGTGATGTCTGCCTTGGAGGgtgagtattaatgctcttagtcttcttatccctcatccacctctgataat #### Pitpnm1_ID320_17 --> 0 - 0 Original Alignment GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG ctattgtagtatgggtgtatcttgtatccctgatggttgttctatttcagATTATCGAGAAAGAGTGGCCACAATTAACTGAGTGTCAAGAACCATCCATCTACAGCCCTGCCTTCCCTAAGGAAAAATGGCAGTGCAAGCAAACACAGGTCAAGATTCGGgtgagtatcctactgtccagtcctagctaaagtttgtccctcggatgctt Alignment from CESAR GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG ctattgtagtatgggtgtatcttgtatccctgatggttgttctatttcagATTATCGAGAAAGAGTGGCCACAATTAACTGAGTGTCAAGAACCATCCATCTACAGCCCTGCCTTCCCTAAGGAAAAATGGCAGTGCAAGCAAACACAGGTCAAGATTCGGgtgagtatcctactgtccagtcctagctaaagtttgtccctcggatgctt Alignment from Spaln_aa2Genome GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG ctattgtagtatgggtgtatcttgtatccctgatggttgttctatttcagATTATCGAGAAAGAGTGGCCACAATTAACTGAGTGTCAAGAACCATCCATCTACAGCCCTGCCTTCCCTAAGGAAAAATGGCAGTGCAAGCAAACACAGGTCAAGATTCGGgtgagtatcctactgtccagtcctagctaaagtttgtccctcggatgctt Alignment from Spaln_nt2Genome GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG ctattgtagtatgggtgtatcttgtatccctgatggttgttctatttcagATTATCGAGAAAGAGTGGCCACAATTAACTGAGTGTCAAGAACCATCCATCTACAGCCCTGCCTTCCCTAAGGAAAAATGGCAGTGCAAGCAAACACAGGTCAAGATTCGGgtgagtatcctactgtccagtcctagctaaagtttgtccctcggatgctt Alignment from Pairagon GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG ctattgtagtatgggtgtatcttgtatccctgatggttgttctatttcagATTATCGAGAAAGAGTGGCCACAATTAACTGAGTGTCAAGAACCATCCATCTACAGCCCTGCCTTCCCTAAGGAAAAATGGCAGTGCAAGCAAACACAGGTCAAGATTCGGgtgagtatcctactgtccagtcctagctaaagtttgtccctcggatgctt Alignment from Exonerate_protein2genome GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG ctattgtagtatgggtgtatcttgtatccctgatggttgttctatttcagATTATCGAGAAAGAGTGGCCACAATTAACTGAGTGTCAAGAACCATCCATCTACAGCCCTGCCTTCCCTAAGGAAAAATGGCAGTGCAAGCAAACACAGGTCAAGATTCGGgtgagtatcctactgtccagtcctagctaaagtttgtccctcggatgctt Alignment from Exonerate_coding2genome GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG ctattgtagtatgggtgtatcttgtatccctgatggttgttctatttcagATTATCGAGAAAGAGTGGCCACAATTAACTGAGTGTCAAGAACCATCCATCTACAGCCCTGCCTTCCCTAAGGAAAAATGGCAGTGCAAGCAAACACAGGTCAAGATTCGGgtgagtatcctactgtccagtcctagctaaagtttgtccctcggatgctt Alignment from GeneWise GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG ctattgtagtatgggtgtatcttgtatccctgatggttgttctatttcagATTATCGAGAAAGAGTGGCCACAATTAACTGAGTGTCAAGAACCATCCATCTACAGCCCTGCCTTCCCTAAGGAAAAATGGCAGTGCAAGCAAACACAGGTCAAGATTCGGgtgagtatcctactgtccagtcctagctaaagtttgtccctcggatgctt #### Pitpnm1_ID321_18 --> 0 - 0 Original Alignment AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGC gctttgctttcattcttcatatagttgttctgccctctttcctctcacagAATGTCACTTCTAACCACAGAGCAAGTGACACTGTGATATGTGAGGGCCACCCCCAGGTACTAAATGGCCATTTCATGTATGGACCATTGGATGTAGTTACACTCACCAGAGAAGAGgtatggctctctctcttccatgaagGTTGATGTCTATGTCATGACACAGC Alignment from CESAR AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGC gctttgctttcattcttcatatagttgttctgccctctttcctctcacagAATGTCACTTCTAACCACAGAGCAAGTGACACTGTGATATGTGAGGGCCACCCCCAGGTACTAAATGGCCATTTCATGTATGGACCATTGGATGTAGTTACACTCACCAGAGAAGAGgtctgacttggttgctgttttgcagGTTGATGTCTATGTCATGACACAGC Alignment from Spaln_aa2Genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG-------------------------GTGGATGTCTACGTCATGACACAGC gctttgctttcattcttcatatagttgttctgccctctttcctctcacagAATGTCACTTCTAACCACAGAGCAAGTGACACTGTGATATGTGAGGGCCACCCCCAGGTACTAAATGGCCATTTCATGTATGGACCATTGGATGTAGTTACACTCACCAGAGAAGAGGTATGGCTCTCTCTCTTCCATGAAgGTTGATGTCTATGTCATGACACAGC Alignment from Spaln_nt2Genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGA-------------------------GAAGGTGGATGTCTACGTCATGACACAGC gctttgctttcattcttcatatagttgttctgccctctttcctctcacagAATGTCACTTCTAACCACAGAGCAAGTGACACTGTGATATGTGAGGGCCACCCCCAGGTACTAAATGGCCATTTCATGTATGGACCATTGGATGTAGTTACACTCACCAGAGAAGAGGTATGGCTCTCTCTCTTCCATGAAGGTTGATGTCTATGTCATGACACAGC Alignment from Pairagon AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGA-------------------------GAAGGTGGATGTCTACGTCATGACACAGC gctttgctttcattcttcatatagttgttctgccctctttcctctcacagAATGTCACTTCTAACCACAGAGCAAGTGACACTGTGATATGTGAGGGCCACCCCCAGGTACTAAATGGCCATTTCATGTATGGACCATTGGATGTAGTTACACTCACCAGAGAAGAGGTATGGCTCTCTCTCTTCCATGAAGGTTGATGTCTATGTCATGACACAGC Alignment from Exonerate_protein2genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCAC TGGAGAGAAGGTGGATGTCTACGTCATGA gctttgctttcattcttcatatagttgttctgccctctttcctctcacagAATGTCACTTCTAACCACAGAGCAAGTGACACTGTGATATGTGAGGGCCACCCCCAGGTACTAAATGGCCATTTCATGTATGGACCATTGGATGTAGTTACACTCACcagagaagaggtatggctctctctcttccatG------AAGGTTGATGTCTATGTCATGA Alignment from Exonerate_coding2genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCAC TGGAGAGAAGGTGGATGTCTACGTCATGA gctttgctttcattcttcatatagttgttctgccctctttcctctcacagAATGTCACTTCTAACCACAGAGCAAGTGACACTGTGATATGTGAGGGCCACCCCCAGGTACTAAATGGCCATTTCATGTATGGACCATTGGATGTAGTTACACTCACcagagaagaggtatggctctctctcttccatG------AAGGTTGATGTCTATGTCATGA Alignment from GeneWise AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAG---------------------------AAGGTGGATGTCTACGTCATGACACAGC gctttgctttcattcttcatatagttgttctgccctctttcctctcacagAATGTCACTTCTAACCACAGAGCAAGTGACACTGTGATATGTGAGGGCCACCCCCAGGTACTAAATGGCCATTTCATGTATGGACCATTGGATGTAGTTACACTCACCA--GAGAAGAGGTATGGCTCTCTCTCTTCCATGAAGGTTGATGTCTATGTCATGACACAGC #### Pitpnm1_ID323_20 --> 1 - 2 Original Alignment gGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCag cactcctgtgaaatgctgacttactctgtcatttctcctgatttccccaggGGTGACCACACATATGCTGAATGCTGCTTAACCATTGTCTCCAGAGGTGCTGAAGCAGTGGTTTTCAGCATTGATGGTTCTTTTACTGCAAGTGTCTCAATCATGGGTAGCGACCCCAAGGTGCGAGCTGGAGCAGTAGATGTGGTGaggtcagtccagactaccgggccatatactgatcttctgtctgtgacgtggt Alignment from CESAR gGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCag cactcctgtgaaatgctgacttactctgtcatttctcctgatttccccaggGGTGACCACACATATGCTGAATGCTGCTTAACCATTGTCTCCAGAGGTGCTGAAGCAGTGGTTTTCAGCATTGATGGTTCTTTTACTGCAAGTGTCTCAATCATGGGTAGCGACCCCAAGGTGCGAGCTGGAGCAGTAGATGTGGTGaggtcagtccagactaccgggccatatactgatcttctgtctgtgacgtggt Alignment from Spaln_aa2Genome GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG cactcctgtgaaatgctgacttactctgtcatttctcctgatttccccagGGGTGACCACACATATGCTGAATGCTGCTTAACCATTGTCTCCAGAGGTGCTGAAGCAGTGGTTTTCAGCATTGATGGTTCTTTTACTGCAAGTGTCTCAATCATGGGTAGCGACCCCAAGGTGCGAGCTGGAGCAGTAGATGTGGTGAGgtcagtccagactaccgggccatatactgatcttctgtctgtgacgtggt Alignment from Spaln_nt2Genome GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG cactcctgtgaaatgctgacttactctgtcatttctcctgatttccccagGGGTGACCACACATATGCTGAATGCTGCTTAACCATTGTCTCCAGAGGTGCTGAAGCAGTGGTTTTCAGCATTGATGGTTCTTTTACTGCAAGTGTCTCAATCATGGGTAGCGACCCCAAGGTGCGAGCTGGAGCAGTAGATGTGGTGAGgtcagtccagactaccgggccatatactgatcttctgtctgtgacgtggt Alignment from Pairagon GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG cactcctgtgaaatgctgacttactctgtcatttctcctgatttccccagGGGTGACCACACATATGCTGAATGCTGCTTAACCATTGTCTCCAGAGGTGCTGAAGCAGTGGTTTTCAGCATTGATGGTTCTTTTACTGCAAGTGTCTCAATCATGGGTAGCGACCCCAAGGTGCGAGCTGGAGCAGTAGATGTGGTGAGgtcagtccagactaccgggccatatactgatcttctgtctgtgacgtggt Alignment from Exonerate_protein2genome cactcctgtgaaatgctgacttactctgtcatttctcctgatttccccaggggtgaccacacatatgctgaatgctgcttaaccattgtctccagaggtgctgaagcagtggttttcagcattgatggttcttttactgcaagtgtctcaatcatgggtagcgaccccaaggtgcgagctggagcagtagatgtggtgaggtcagtccagactaccgggccatatactgatcttctgtctgtgacgtggt Alignment from Exonerate_coding2genome cactcctgtgaaatgctgacttactctgtcatttctcctgatttccccaggggtgaccacacatatgctgaatgctgcttaaccattgtctccagaggtgctgaagcagtggttttcagcattgatggttcttttactgcaagtgtctcaatcatgggtagcgaccccaaggtgcgagctggagcagtagatgtggtgaggtcagtccagactaccgggccatatactgatcttctgtctgtgacgtggt Alignment from GeneWise GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTCTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG cactcctgtgaaatgctgacttactctgtcatttctcctgatttccccagGGGTGACCACACATATGCTGAATGCTGCTTAACCATTGTCTCCAGAGGTGCTGAAGCAGTGGTTTTCAGCATTGATGGTTCTTTTACTGCAAGTGTCTCAATCATGGGTAGCGACCCCAAGGTGCGAGCTGGAGCAGTAGATGTGGTGAGgtcagtccagactaccgggccatatactgatcttctgtctgtgacgtggt #### Pkd2l1_ID8959_9 --> 1 - 0 Original Alignment tTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG atgagagcctcgtatacacagcgtgctctgctttgttaatgttaaaacagtTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCTCGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTTGTGCTTCTGgtaagcatgacttaaagaactgtgtgctatatttctgttggggatattct Alignment from CESAR tTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG atgagagcctcgtatacacagcgtgctctgctttgttaatgttaaaacagtTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCTCGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTTGTGCTTCTGgtaagcatgacttaaagaactgtgtgctatatttctgttggggatattct Alignment from Spaln_aa2Genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG atgagagcctcgtatacacagcgtgctctgctttgttaatgttaaaacagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCTCGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTTGTGCTTCTGgtaagcatgacttaaagaactgtgtgctatatttctgttggggatattct Alignment from Spaln_nt2Genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG atgagagcctcgtatacacagcgtgctctgctttgttaatgttaaaacagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCTCGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTTGTGCTTCTGgtaagcatgacttaaagaactgtgtgctatatttctgttggggatattct Alignment from Pairagon TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG atgagagcctcgtatacacagcgtgctctgctttgttaatgttaaaacagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCTCGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTTGTGCTTCTGgtaagcatgacttaaagaactgtgtgctatatttctgttggggatattct Alignment from Exonerate_protein2genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG atgagagcctcgtatacacagcgtgctctgctttgttaatgttaaaacagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCTCGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTTGTGCTTCTGgtaagcatgacttaaagaactgtgtgctatatttctgttggggatattct Alignment from Exonerate_coding2genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG atgagagcctcgtatacacagcgtgctctgctttgttaatgttaaaacagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCTCGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTTGTGCTTCTGgtaagcatgacttaaagaactgtgtgctatatttctgttggggatattct Alignment from GeneWise TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG atgagagcctcgtatacacagcgtgctctgctttgttaatgttaaaacagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCTCGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTTGTGCTTCTGgtaagcatgacttaaagaactgtgtgctatatttctgttggggatattct #### Pla2g16_ID2178_2 --> 0 - 1 Original Alignment CCAGAACCCAAGCCTGGAGACCTGATTGAGATTTTCCGCCCTATGTACAGACACTGGGCCATCTATGTTGGTGATGGATACGTGATCCACCTGGCTCCTCCAa aatgagggttggcagtgggacaatatttctggaaccttctttcccttcagCCAGAACCCAAACCAGGTGACCTG---AAGATCTTCTGCCCTATGTATAGACATTGGGCCATCTATGTTGGTGATGGCTATGTGATCCACCTAGCTCCTCCAagtagagaaaacagtatctcctctctcccaagtaacatgcatcctaaaaaa Alignment from CESAR CCAGAACCCAAGCCTGGAGACCTGATTGAGATTTTCCGCCCTATGTACAGACACTGGGCCATCTATGTTGGTGATGGATACGTGATCCACCTGGCTCCTCCAa aatgagggttggcagtgggacaatatttctggaaccttctttcccttcagCCAGAACCCAAACCAGGTGACCTG---AAGATCTTCTGCCCTATGTATAGACATTGGGCCATCTATGTTGGTGATGGCTATGTGATCCACCTAGCTCCTCCAagtagagaaaacagtatctcctctctcccaagtaacatgcatcctaaaaaa Alignment from Spaln_aa2Genome CCAGAACCCAAGCCTGGAGACCTGATTGAGATTTTCCGCCCTATGTACAGACACTGGGCCATCTATGTTGGTGATGGATACGTGATCCACCTGGCTCCTCCAA aatgagggttggcagtgggacaatatttctggaaccttctttcccttcagCCAGAACCCAAACCAGGTGACCTG---AAGATCTTCTGCCCTATGTATAGACATTGGGCCATCTATGTTGGTGATGGCTATGTGATCCACCTAGCTCCTCCAAgtagagaaaacagtatctcctctctcccaagtaacatgcatcctaaaaaa Alignment from Spaln_nt2Genome CCAGAACCCAAGCCTGGAGACCTGATTGAGATTTTCCGCCCTATGTACAGACACTGGGCCATCTATGTTGGTGATGGATACGTGATCCACCTGGCTCCTCCAA aatgagggttggcagtgggacaatatttctggaaccttctttcccttcagCCAGAACCCAAACCAGGTGACCTGA---AGATCTTCTGCCCTATGTATAGACATTGGGCCATCTATGTTGGTGATGGCTATGTGATCCACCTAGCTCCTCCAAgtagagaaaacagtatctcctctctcccaagtaacatgcatcctaaaaaa Alignment from Pairagon CCAGAACCCAAGCCTGGAGACCTGATTGAGATTTTCCGCCCTATGTACAGACACTGGGCCATCTATGTTGGTGATGGATACGTGATCCACCTGGCTCCTCCAA aatgagggttggcagtgggacaatatttctggaaccttctttcccttcagCCAGAACCCAAACCAGGTGACCTGA---AGATCTTCTGCCCTATGTATAGACATTGGGCCATCTATGTTGGTGATGGCTATGTGATCCACCTAGCTCCTCCAAgtagagaaaacagtatctcctctctcccaagtaacatgcatcctaaaaaa Alignment from Exonerate_protein2genome CCAGAACCCAAGCCTGGAGACCTGATTGAGATTTTCCGCCCTATGTACAGACACTGGGCCATCTATGTTGGTGATGGATACGTGATCCACCTGGCTCCTCCAA aatgagggttggcagtgggacaatatttctggaaccttctttcccttcagCCAGAACCCAAACCAGGTGACCTG---AAGATCTTCTGCCCTATGTATAGACATTGGGCCATCTATGTTGGTGATGGCTATGTGATCCACCTAGCTCCTCCAAgtagagaaaacagtatctcctctctcccaagtaacatgcatcctaaaaaa Alignment from Exonerate_coding2genome CCAGAACCCAAGCCTGGAGACCTGATTGAGATTTTCCGCCCTATGTACAGACACTGGGCCATCTATGTTGGTGATGGATACGTGATCCACCTGGCTCCTCCAA aatgagggttggcagtgggacaatatttctggaaccttctttcccttcagCCAGAACCCAAACCAGGTGACCTG---AAGATCTTCTGCCCTATGTATAGACATTGGGCCATCTATGTTGGTGATGGCTATGTGATCCACCTAGCTCCTCCAAgtagagaaaacagtatctcctctctcccaagtaacatgcatcctaaaaaa Alignment from GeneWise CTAGCACCCATACCAGAACCCAAGCCTGGAGACCTGATTGAGATTTTCCGCCCTATGTACAGACACTGGGCCATCTATGTTGGTGATGGATACGTGATCCACCTGGCTCCTCCAA aatgagggttggcagtgggacaatatttctggaaccttCTTTCCCTTCAGCCAGAACCCAAACCAGGTGACCTG---AAGATCTTCTGCCCTATGTATAGACATTGGGCCATCTATGTTGGTGATGGCTATGTGATCCACCTAGCTCCTCCAAgtagagaaaacagtatctcctctctcccaagtaacatgcatcctaaaaaa #### Plcb3_ID1905_26 --> 1 - 0 Original Alignment gGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA agaggtccagttgtatcagtcagagagtccatatccatcaccaccaccaggGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAATCCAAGCAGTATAGGGACTTGCAGAACCAAAAAGCACAGAGCTTGTTGGAATTGAGAGAAGCCCAGGGTGATGTGGAGACCAACCGCAAGCTGGAACATCTACGACAGgtaggagatcagtgggggatggttgatttttctcaccatctgcagGCGCA Alignment from CESAR gGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA agaggtccagttgtatcagtcagagagtccatatccatcaccaccaccaggGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAATCCAAGCAGTATAGGGACTTGCAGAACCAAAAAGCACAGAGCTTGTTGGAATTGAGAGAAGCCCAGGGTGATGTGGAGACCAACCGCAAGCTGGAACATCTACGACAGgtaggagatcagtgggggatggtgtcttctcttgtctcttttaagGCGCA Alignment from Spaln_aa2Genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA agaggtccagttgtatcagtcagagagtccatatccatcaccaccaccagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAATCCAAGCAGTATAGGGACTTGCAGAACCAAAAAGCACAGAGCTTGTTGGAATTGAGAGAAGCCCAGGGTGATGTGGAGACCAACCGCAAGCTGGAACATCTACGACAGgtaggagatcagtgggggatggttgatttttctcaccatctgcagGCGCA Alignment from Spaln_nt2Genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA agaggtccagttgtatcagtcagagagtccatatccatcaccaccaccagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAATCCAAGCAGTATAGGGACTTGCAGAACCAAAAAGCACAGAGCTTGTTGGAATTGAGAGAAGCCCAGGGTGATGTGGAGACCAACCGCAAGCTGGAACATCTACGACAGgtaggagatcagtgggggatggttgatttttctcaccatctgcagGCGCA Alignment from Pairagon GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA agaggtccagttgtatcagtcagagagtccatatccatcaccaccaccagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAATCCAAGCAGTATAGGGACTTGCAGAACCAAAAAGCACAGAGCTTGTTGGAATTGAGAGAAGCCCAGGGTGATGTGGAGACCAACCGCAAGCTGGAACATCTACGACAGgtaggagatcagtgggggatggttgatttttctcaccatctgcagGCGCA Alignment from Exonerate_protein2genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA agaggtccagttgtatcagtcagagagtccatatccatcaccaccaccagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAATCCAAGCAGTATAGGGACTTGCAGAACCAAAAAGCACAGAGCTTGTTGGAATTGAGAGAAGCCCAGGGTGATGTGGAGACCAACCGCAAGCTGGAACATCTACGACAGgtaggagatcagtgggggatggttgatttttctcaccatctgcagGCGCA Alignment from Exonerate_coding2genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA agaggtccagttgtatcagtcagagagtccatatccatcaccaccaccagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAATCCAAGCAGTATAGGGACTTGCAGAACCAAAAAGCACAGAGCTTGTTGGAATTGAGAGAAGCCCAGGGTGATGTGGAGACCAACCGCAAGCTGGAACATCTACGACAGgtaggagatcagtgggggatggttgatttttctcaccatctgcagGCGCA Alignment from GeneWise GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGA---------------------------------------------CAGGCTCA agaggtccagttgtatcagtcagagagtccatatccatcaccaccaccagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAATCCAAGCAGTATAGGGACTTGCAGAACCAAAAAGCACAGAGCTTGTTGGAATTGAGAGAAGCCCAGGGTGATGTGGAGACCAACCGCAAGCTGGAACATCTACGACAGGTAGGAGATCAGTGGGGGATGGTTGATTTTTCTCACCATCTGCAGGCGCA #### Plcb3_ID1908_23 --> 0 - 1 Original Alignment GCTCAGGCCAGCACAGAGACATATCAGGAGACCCCGTGTCAACAGCCAGGGTCACAGCTCCCCTCCAACCCCACACCTAACCCACTGGATGCCTCACCTCGCTGGCCCCCCGGTCCTACCACTTCCTCCACTAGCTCCTCCCTCAGTAGCCCAg ctccattcacttcaaaggtgtaatcttctcctttcttcccatcttcccagGTTCAGGCCAGCACTGAAACATATCAGGATCCCCCATGTCAAAAGCCAGGTTCACAGGTCCCTTCTAACCCCACACCAATCCCACTTGAAGCCTCTCCACGCTGGCCTCCTCGCCCCACCAACTCCTCTACTACCTCACCCCTCAGCAGCCCAggtaagtggaaacaaatgtgccattaaggagccatacggatttgattgctt Alignment from CESAR GCTCAGGCCAGCACAGAGACATATCAGGAGACCCCGTGTCAACAGCCAGGGTCACAGCTCCCCTCCAACCCCACACCTAACCCACTGGATGCCTCACCTCGCTGGCCCCCCGGTCCTACCACTTCCTCCACTAGCTCCTCCCTCAGTAGCCCAg ctccattcacttcaaaggtgtaatcttctcctttcttcccatcttcccagGTTCAGGCCAGCACTGAAACATATCAGGATCCCCCATGTCAAAAGCCAGGTTCACAGGTCCCTTCTAACCCCACACCAATCCCACTTGAAGCCTCTCCACGCTGGCCTCCTCGCCCCACCAACTCCTCTACTACCTCACCCCTCAGCAGCCCAggtaagtggaaacaaatgtgccattaaggagccatacggatttgattgctt Alignment from Spaln_aa2Genome GCTCAGGCCAGCACAGAGACATATCAGGAGACCCCGTGTCAACAGCCAGGGTCACAGCTCCCCTCCAACCCCACACCTAACCCACTGGATGCCTCACCTCGCTGGCCCCCCGGTCCTACCACTTCCTCCACTAGCTCCTCCCTCAGTAGCCCAG ctccattcacttcaaaggtgtaatcttctcctttcttcccatcttcccagGTTCAGGCCAGCACTGAAACATATCAGGATCCCCCATGTCAAAAGCCAGGTTCACAGGTCCCTTCTAACCCCACACCAATCCCACTTGAAGCCTCTCCACGCTGGCCTCCTCGCCCCACCAACTCCTCTACTACCTCACCCCTCAGCAGCCCAGgtaagtggaaacaaatgtgccattaaggagccatacggatttgattgctt Alignment from Spaln_nt2Genome GCTCAGGCCAGCACAGAGACATATCAGGAGACCCCGTGTCAACAGCCAGGGTCACAGCTCCCCTCCAACCCCACACCTAACCCACTGGATGCCTCACCTCGCTGGCCCCCCGGTCCTACCACTTCCTCCACTAGCTCCTCCCTCAGTAGCCCAG ctccattcacttcaaaggtgtaatcttctcctttcttcccatcttcccagGTTCAGGCCAGCACTGAAACATATCAGGATCCCCCATGTCAAAAGCCAGGTTCACAGGTCCCTTCTAACCCCACACCAATCCCACTTGAAGCCTCTCCACGCTGGCCTCCTCGCCCCACCAACTCCTCTACTACCTCACCCCTCAGCAGCCCAGgtaagtggaaacaaatgtgccattaaggagccatacggatttgattgctt Alignment from Pairagon GCTCAGGCCAGCACAGAGACATATCAGGAGACCCCGTGTCAACAGCCAGGGTCACAGCTCCCCTCCAACCCCACACCTAACCCACTGGATGCCTCACCTCGCTGGCCCCCCGGTCCTACCACTTCCTCCACTAGCTCCTCCCTCAGTAGCCCAG ctccattcacttcaaaggtgtaatcttctcctttcttcccatcttcccagGTTCAGGCCAGCACTGAAACATATCAGGATCCCCCATGTCAAAAGCCAGGTTCACAGGTCCCTTCTAACCCCACACCAATCCCACTTGAAGCCTCTCCACGCTGGCCTCCTCGCCCCACCAACTCCTCTACTACCTCACCCCTCAGCAGCCCAGgtaagtggaaacaaatgtgccattaaggagccatacggatttgattgctt Alignment from Exonerate_protein2genome GCTCAGGCCAGCACAGAGACATATCAGGAGACCCCGTGTCAACAGCCAGGGTCACAGCTCCCCTCCAACCCCACACCTAACCCACTGGATGCCTCACCTCGCTGGCCCCCCGGTCCTACCACTTCCTCCACTAGCTCCTCCCTCAGTAGCCCAG ctccattcacttcaaaggtgtaatcttctcctttcttcccatcttcccagGTTCAGGCCAGCACTGAAACATATCAGGATCCCCCATGTCAAAAGCCAGGTTCACAGGTCCCTTCTAACCCCACACCAATCCCACTTGAAGCCTCTCCACGCTGGCCTCCTCGCCCCACCAACTCCTCTACTACCTCACCCCTCAGCAGCCCAGgtaagtggaaacaaatgtgccattaaggagccatacggatttgattgctt Alignment from Exonerate_coding2genome GCTCAGGCCAGCACAGAGACATATCAGGAGACCCCGTGTCAACAGCCAGGGTCACAGCTCCCCTCCAACCCCACACCTAACCCACTGGATGCCTCACCTCGCTGGCCCCCCGGTCCTACCACTTCCTCCACTAGCTCCTCCCTCAGTAGCCCAG ctccattcacttcaaaggtgtaatcttctcctttcttcccatcttcccagGTTCAGGCCAGCACTGAAACATATCAGGATCCCCCATGTCAAAAGCCAGGTTCACAGGTCCCTTCTAACCCCACACCAATCCCACTTGAAGCCTCTCCACGCTGGCCTCCTCGCCCCACCAACTCCTCTACTACCTCACCCCTCAGCAGCCCAGgtaagtggaaacaaatgtgccattaaggagccatacggatttgattgctt Alignment from GeneWise GCTCAGGCCAGCACAGAGACATATCAGGAGACCCCGTGTCAACAGCCAGGGTCACAGCTCCCCTCCAACCCCACACCTAACCCACTGGATGCCTCACCTCGCTGGCCCCCCGGTCCTACCACTTCCTCCACTAGCTCCTCCCTCAGTAGCCCAGGG-- ctccattcacttcaaaggtgtaatcttctcctttcttcccatcttcccagGTTCAGGCCAGCACTGAAACATATCAGGATCCCCCATGTCAAAAGCCAGGTTCACAGGTCCCTTCTAACCCCACACCAATCCCACTTGAAGCCTCTCCACGCTGGCCTCCTCGCCCCACCAACTCCTCTACTACCTCACCCCTCAGCAGCCCAGGTAAgtggaaacaaatgtgccattaaggagccatacggatttgattgctt #### Plcb3_ID1928_3 --> 0 - 0 Original Alignment GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG tagtgctgtggacaaccttgtaccttgaactgtctctgtgctttttaaagGAGGTGGACACACTGGATATCAGCTCAATCAGAGATACAAGGACAGGTCGTTATGCTCACCTGCCCAAAgtgagtccaccggctttgcacatgtaaataccacaccactttataggcac Alignment from CESAR GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG tagtgctgtggacaaccttgtaccttgaactgtctctgtgctttttaaagGAGGTGGACACACTGGATATCAGCTCAATCAGAGATACAAGGACAGGTCGTTATGCTCACCTGCCCAAAgtgagtccaccggctttgcacatgtaaataccacaccactttataggcac Alignment from Spaln_aa2Genome GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG tagtgctgtggacaaccttgtaccttgaactgtctctgtgctttttaaagGAGGTGGACACACTGGATATCAGCTCAATCAGAGATACAAGGACAGGTCGTTATGCTCACCTGCCCAAAgtgagtccaccggctttgcacatgtaaataccacaccactttataggcac Alignment from Spaln_nt2Genome GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG tagtgctgtggacaaccttgtaccttgaactgtctctgtgctttttaaagGAGGTGGACACACTGGATATCAGCTCAATCAGAGATACAAGGACAGGTCGTTATGCTCACCTGCCCAAAgtgagtccaccggctttgcacatgtaaataccacaccactttataggcac Alignment from Pairagon GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG tagtgctgtggacaaccttgtaccttgaactgtctctgtgctttttaaagGAGGTGGACACACTGGATATCAGCTCAATCAGAGATACAAGGACAGGTCGTTATGCTCACCTGCCCAAAgtgagtccaccggctttgcacatgtaaataccacaccactttataggcac Alignment from Exonerate_protein2genome GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG tagtgctgtggacaaccttgtaccttgaactgtctctgtgctttttaaagGAGGTGGACACACTGGATATCAGCTCAATCAGAGATACAAGGACAGGTCGTTATGCTCACCTGCCCAAAgtgagtccaccggctttgcacatgtaaataccacaccactttataggcac Alignment from Exonerate_coding2genome tagtgctgtggacaaccttgtaccttgaactgtctctgtgctttttaaaggaggtggacacactggatatcagctcaatcagagatacaaggacaggtcgttatgctcacctgcccaaagtgagtccaccggctttgcacatgtaaataccacaccactttataggcac Alignment from GeneWise GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG tagtgctgtggacaaccttgtaccttgaactgtctctgtgctttttaaagGAGGTGGACACACTGGATATCAGCTCAATCAGAGATACAAGGACAGGTCGTTATGCTCACCTGCCCAAAgtgagtccaccggctttgcacatgtaaataccacaccactttataggcac #### Plce1_ID7617_5 --> 1 - 0 Original Alignment gTCAAGGAAAGTTCTAAAGATGTGGCAGTTCATGGACCAGTCTGACATTGAGACCATGCGGAGCCTGAAGGATGCCATGGCCCAGCATGAGTCTTCCGTGGAGTACAAGAAGGTAGTGACCCGAGCCTTGCACATCCCCGGCTGCAAAGTGGTCCCCTTCTGTGGGGTGTTCCTGAAGGAGCTCTGTGAGGTGCTTGATGGTGCCTCTGGCCTCCTGAAGCTCTGCCCACGGTACAGCTCCCAAGAAGAAGCTCTGGAG gcatgtatgaattcctagttttttagaagcattcctcttttgtcccacaggTCTAGAAAAGTTCTAAAGATGTGGCAGTTTATGGACCAGTCTGACATTGAGACCATGCGGAGCTTGGAGGATGCCATGGCCCAACACGAATCATCTGTGGAGTACAAGAGGGTGGTGACTCGGGCCTTACACATCCCTGGTTGTAAAGTGGTCCCTTTCTGTGGAATTTTTCTGAAAGACCTCTGTGAAGTGTTAGATGTAGCTTCTGGCCTCCTCAAACTCTGCCCACGATACAGCTCGCAAGAGAAAGCACTGGATgtatgattctctaagccctgattcggaaaggggtattttatttacttgct Alignment from CESAR gTCAAGGAAAGTTCTAAAGATGTGGCAGTTCATGGACCAGTCTGACATTGAGACCATGCGGAGCCTGAAGGATGCCATGGCCCAGCATGAGTCTTCCGTGGAGTACAAGAAGGTAGTGACCCGAGCCTTGCACATCCCCGGCTGCAAAGTGGTCCCCTTCTGTGGGGTGTTCCTGAAGGAGCTCTGTGAGGTGCTTGATGGTGCCTCTGGCCTCCTGAAGCTCTGCCCACGGTACAGCTCCCAAGAAGAAGCTCTGGAG gcatgtatgaattcctagttttttagaagcattcctcttttgtcccacaggTCTAGAAAAGTTCTAAAGATGTGGCAGTTTATGGACCAGTCTGACATTGAGACCATGCGGAGCTTGGAGGATGCCATGGCCCAACACGAATCATCTGTGGAGTACAAGAGGGTGGTGACTCGGGCCTTACACATCCCTGGTTGTAAAGTGGTCCCTTTCTGTGGAATTTTTCTGAAAGACCTCTGTGAAGTGTTAGATGTAGCTTCTGGCCTCCTCAAACTCTGCCCACGATACAGCTCGCAAGAGAAAGCACTGGATgtatgattctctaagccctgattcggaaaggggtattttatttacttgct Alignment from Spaln_aa2Genome GTCAAGGAAAGTTCTAAAGATGTGGCAGTTCATGGACCAGTCTGACATTGAGACCATGCGGAGCCTGAAGGATGCCATGGCCCAGCATGAGTCTTCCGTGGAGTACAAGAAGGTAGTGACCCGAGCCTTGCACATCCCCGGCTGCAAAGTGGTCCCCTTCTGTGGGGTGTTCCTGAAGGAGCTCTGTGAGGTGCTTGATGGTGCCTCTGGCCTCCTGAAGCTCTGCCCACGGTACAGCTCCCAAGAAGAAGCTCTGGAG gcatgtatgaattcctagttttttagaagcattcctcttttgtcccacagGTCTAGAAAAGTTCTAAAGATGTGGCAGTTTATGGACCAGTCTGACATTGAGACCATGCGGAGCTTGGAGGATGCCATGGCCCAACACGAATCATCTGTGGAGTACAAGAGGGTGGTGACTCGGGCCTTACACATCCCTGGTTGTAAAGTGGTCCCTTTCTGTGGAATTTTTCTGAAAGACCTCTGTGAAGTGTTAGATGTAGCTTCTGGCCTCCTCAAACTCTGCCCACGATACAGCTCGCAAGAGAAAGCACTGGATgtatgattctctaagccctgattcggaaaggggtattttatttacttgct Alignment from Spaln_nt2Genome GTCAAGGAAAGTTCTAAAGATGTGGCAGTTCATGGACCAGTCTGACATTGAGACCATGCGGAGCCTGAAGGATGCCATGGCCCAGCATGAGTCTTCCGTGGAGTACAAGAAGGTAGTGACCCGAGCCTTGCACATCCCCGGCTGCAAAGTGGTCCCCTTCTGTGGGGTGTTCCTGAAGGAGCTCTGTGAGGTGCTTGATGGTGCCTCTGGCCTCCTGAAGCTCTGCCCACGGTACAGCTCCCAAGAAGAAGCTCTGGAG gcatgtatgaattcctagttttttagaagcattcctcttttgtcccacagGTCTAGAAAAGTTCTAAAGATGTGGCAGTTTATGGACCAGTCTGACATTGAGACCATGCGGAGCTTGGAGGATGCCATGGCCCAACACGAATCATCTGTGGAGTACAAGAGGGTGGTGACTCGGGCCTTACACATCCCTGGTTGTAAAGTGGTCCCTTTCTGTGGAATTTTTCTGAAAGACCTCTGTGAAGTGTTAGATGTAGCTTCTGGCCTCCTCAAACTCTGCCCACGATACAGCTCGCAAGAGAAAGCACTGGATgtatgattctctaagccctgattcggaaaggggtattttatttacttgct Alignment from Pairagon GTCAAGGAAAGTTCTAAAGATGTGGCAGTTCATGGACCAGTCTGACATTGAGACCATGCGGAGCCTGAAGGATGCCATGGCCCAGCATGAGTCTTCCGTGGAGTACAAGAAGGTAGTGACCCGAGCCTTGCACATCCCCGGCTGCAAAGTGGTCCCCTTCTGTGGGGTGTTCCTGAAGGAGCTCTGTGAGGTGCTTGATGGTGCCTCTGGCCTCCTGAAGCTCTGCCCACGGTACAGCTCCCAAGAAGAAGCTCTGGAG gcatgtatgaattcctagttttttagaagcattcctcttttgtcccacagGTCTAGAAAAGTTCTAAAGATGTGGCAGTTTATGGACCAGTCTGACATTGAGACCATGCGGAGCTTGGAGGATGCCATGGCCCAACACGAATCATCTGTGGAGTACAAGAGGGTGGTGACTCGGGCCTTACACATCCCTGGTTGTAAAGTGGTCCCTTTCTGTGGAATTTTTCTGAAAGACCTCTGTGAAGTGTTAGATGTAGCTTCTGGCCTCCTCAAACTCTGCCCACGATACAGCTCGCAAGAGAAAGCACTGGATgtatgattctctaagccctgattcggaaaggggtattttatttacttgct Alignment from Exonerate_protein2genome GTCAAGGAAAGTTCTAAAGATGTGGCAGTTCATGGACCAGTCTGACATTGAGACCATGCGGAGCCTGAAGGATGCCATGGCCCAGCATGAGTCTTCCGTGGAGTACAAGAAGGTAGTGACCCGAGCCTTGCACATCCCCGGCTGCAAAGTGGTCCCCTTCTGTGGGGTGTTCCTGAAGGAGCTCTGTGAGGTGCTTGATGGTGCCTCTGGCCTCCTGAAGCTCTGCCCACGGTACAGCTCCCAAGAAGAAGCTCTGGAG gcatgtatgaattcctagttttttagaagcattcctcttttgtcccacagGTCTAGAAAAGTTCTAAAGATGTGGCAGTTTATGGACCAGTCTGACATTGAGACCATGCGGAGCTTGGAGGATGCCATGGCCCAACACGAATCATCTGTGGAGTACAAGAGGGTGGTGACTCGGGCCTTACACATCCCTGGTTGTAAAGTGGTCCCTTTCTGTGGAATTTTTCTGAAAGACCTCTGTGAAGTGTTAGATGTAGCTTCTGGCCTCCTCAAACTCTGCCCACGATACAGCTCGCAAGAGAAAGCACTGGATgtatgattctctaagccctgattcggaaaggggtattttatttacttgct Alignment from Exonerate_coding2genome GTCAAGGAAAGTTCTAAAGATGTGGCAGTTCATGGACCAGTCTGACATTGAGACCATGCGGAGCCTGAAGGATGCCATGGCCCAGCATGAGTCTTCCGTGGAGTACAAGAAGGTAGTGACCCGAGCCTTGCACATCCCCGGCTGCAAAGTGGTCCCCTTCTGTGGGGTGTTCCTGAAGGAGCTCTGTGAGGTGCTTGATGGTGCCTCTGGCCTCCTGAAGCTCTGCCCACGGTACAGCTCCCAAGAAGAAGCTCTGGAG gcatgtatgaattcctagttttttagaagcattcctcttttgtcccacagGTCTAGAAAAGTTCTAAAGATGTGGCAGTTTATGGACCAGTCTGACATTGAGACCATGCGGAGCTTGGAGGATGCCATGGCCCAACACGAATCATCTGTGGAGTACAAGAGGGTGGTGACTCGGGCCTTACACATCCCTGGTTGTAAAGTGGTCCCTTTCTGTGGAATTTTTCTGAAAGACCTCTGTGAAGTGTTAGATGTAGCTTCTGGCCTCCTCAAACTCTGCCCACGATACAGCTCGCAAGAGAAAGCACTGGATgtatgattctctaagccctgattcggaaaggggtattttatttacttgct Alignment from GeneWise GTCAAGGAAAGTTCTAAAGATGTGGCAGTTCATGGACCAGTCTGACATTGAGACCATGCGGAGCCTGAAGGATGCCATGGCCCAGCATGAGTCTTCCGTGGAGTACAAGAAGGTAGTGACCCGAGCCTTGCACATCCCCGGCTGCAAAGTGGTCCCCTTCTGTGGGGTGTTCCTGAAGGAGCTCTGTGAGGTGCTTGATGGTGCCTCTGGCCTCCTGAAGCTCTGCCCACGGTACAGCTCCCAAGAAGAAGCTCTGGAG gcatgtatgaattcctagttttttagaagcattcctcttttgtcccacagGTCTAGAAAAGTTCTAAAGATGTGGCAGTTTATGGACCAGTCTGACATTGAGACCATGCGGAGCTTGGAGGATGCCATGGCCCAACACGAATCATCTGTGGAGTACAAGAGGGTGGTGACTCGGGCCTTACACATCCCTGGTTGTAAAGTGGTCCCTTTCTGTGGAATTTTTCTGAAAGACCTCTGTGAAGTGTTAGATGTAGCTTCTGGCCTCCTCAAACTCTGCCCACGATACAGCTCGCAAGAGAAAGCACTGGATgtatgattctctaagccctgattcggaaaggggtattttatttacttgct #### Plce1_ID7619_6 --> 0 - 2 Original Alignment TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGca tcgtcacatgagaagctacaacactgaattttctttttcataatgaatagTTGGTAGCTGATTACAGTGGGCAAGATACCATTTTGCAGCGAGTGGGACAAATAGGGTTAAAAAATGCTGAGAAAGAGCTTACAGTAAATTCTATCCTGCAGGTTATCCGGAGTTGCAGCCGAAGGTTGGAGATGGAAGAAGAAGAAAGTGTTAGTGAAGGAACTGGTTCTAGAAAAAATTCCCTGCAGGACAAAGCCAGATGGcagtaagtcaaagcataagtgggttagtagctaagtaatcactagatgtccc Alignment from CESAR TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGca tcgtcacatgagaagctacaacactgaattttctttttcataatgaatagTTGGTAGCTGATTACAGTGGGCAAGATACCATTTTGCAGCGAGTGGGACAAATAGGGTTAAAAAATGCTGAGAAAGAGCTTACAGTAAATTCTATCCTGCAGGTTATCCGGAGTTGCAGCCGAAGGTTGGAGATGGAAGAAGAAGAAAGTGTTAGTGAAGGAACTGGTTCTAGAAAAAATTCCCTGCAGGACAAAGCCAGATGGcagtaagtcaaagcataagtgggttagtagctaagtaatcactagatgtccc Alignment from Spaln_aa2Genome TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGCA tcgtcacatgagaagctacaacactgaattttctttttcataatgaatagTTGGTAGCTGATTACAGTGGGCAAGATACCATTTTGCAGCGAGTGGGACAAATAGGGTTAAAAAATGCTGAGAAAGAGCTTACAGTAAATTCTATCCTGCAGGTTATCCGGAGTTGCAGCCGAAGGTTGGAGATGGAAGAAGAAGAAAGTGTTAGTGAAGGAACTGGTTCTAGAAAAAATTCCCTGCAGGACAAAGCCAGATGGCAgtaagtcaaagcataagtgggttagtagctaagtaatcactagatgtccc Alignment from Spaln_nt2Genome TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGCA tcgtcacatgagaagctacaacactgaattttctttttcataatgaatagTTGGTAGCTGATTACAGTGGGCAAGATACCATTTTGCAGCGAGTGGGACAAATAGGGTTAAAAAATGCTGAGAAAGAGCTTACAGTAAATTCTATCCTGCAGGTTATCCGGAGTTGCAGCCGAAGGTTGGAGATGGAAGAAGAAGAAAGTGTTAGTGAAGGAACTGGTTCTAGAAAAAATTCCCTGCAGGACAAAGCCAGATGGCAgtaagtcaaagcataagtgggttagtagctaagtaatcactagatgtccc Alignment from Pairagon TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGCA tcgtcacatgagaagctacaacactgaattttctttttcataatgaatagTTGGTAGCTGATTACAGTGGGCAAGATACCATTTTGCAGCGAGTGGGACAAATAGGGTTAAAAAATGCTGAGAAAGAGCTTACAGTAAATTCTATCCTGCAGGTTATCCGGAGTTGCAGCCGAAGGTTGGAGATGGAAGAAGAAGAAAGTGTTAGTGAAGGAACTGGTTCTAGAAAAAATTCCCTGCAGGACAAAGCCAGATGGCAgtaagtcaaagcataagtgggttagtagctaagtaatcactagatgtccc Alignment from Exonerate_protein2genome TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGCA tcgtcacatgagaagctacaacactgaattttctttttcataatgaatagTTGGTAGCTGATTACAGTGGGCAAGATACCATTTTGCAGCGAGTGGGACAAATAGGGTTAAAAAATGCTGAGAAAGAGCTTACAGTAAATTCTATCCTGCAGGTTATCCGGAGTTGCAGCCGAAGGTTGGAGATGGAAGAAGAAGAAAGTGTTAGTGAAGGAACTGGTTCTAGAAAAAATTCCCTGCAGGACAAAGCCAGATGGCAgtaagtcaaagcataagtgggttagtagctaagtaatcactagatgtccc Alignment from Exonerate_coding2genome TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGCA tcgtcacatgagaagctacaacactgaattttctttttcataatgaatagTTGGTAGCTGATTACAGTGGGCAAGATACCATTTTGCAGCGAGTGGGACAAATAGGGTTAAAAAATGCTGAGAAAGAGCTTACAGTAAATTCTATCCTGCAGGTTATCCGGAGTTGCAGCCGAAGGTTGGAGATGGAAGAAGAAGAAAGTGTTAGTGAAGGAACTGGTTCTAGAAAAAATTCCCTGCAGGACAAAGCCAGATGGCAgtaagtcaaagcataagtgggttagtagctaagtaatcactagatgtccc Alignment from GeneWise TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGCA tcgtcacatgagaagctacaacactgaattttctttttcataatgaatagTTGGTAGCTGATTACAGTGGGCAAGATACCATTTTGCAGCGAGTGGGACAAATAGGGTTAAAAAATGCTGAGAAAGAGCTTACAGTAAATTCTATCCTGCAGGTTATCCGGAGTTGCAGCCGAAGGTTGGAGATGGAAGAAGAAGAAAGTGTTAGTGAAGGAACTGGTTCTAGAAAAAATTCCCTGCAGGACAAAGCCAGATGGCAgtaagtcaaagcataagtgggttagtagctaagtaatcactagatgtccc #### Plce1_ID7622_8 --> 0 - 0 Original Alignment GAGGATGGTCGGTATGAAGGCCCAACCTTGGCACATGCTGTGGAGTTGTTTGGTGGTAGGCGGTGGAGCACTAGAAACCCCAGCCCTGGAATGTCAGCAAAGAATGCTGAGAAGCCCAACATGCAGAGAAACAACACCCTGGGCATAAGCACCACCAAGAAAAAGAAGAAAATGCTCATGAGG catcttcattcttggtggtccctgtccctcatttctgtttctgggcatagGAAGATGGACGTTATGAAGGTGCAGCTCTGGCA---CCTGCAGAGTTGTTTGGTGGTAGGAGGTGGACTACCAGAAATCCTAGCCCTGGTATGTCAGCAAAAAATGCTGAGAAGCCAAATATGCCAAGGAACAATACTCTGGGCATAAGTACCACAAAGAAGAAAAAGAAAATGCTCATAAGGgtaagcctggtcccagagtctgtgctaaatctctaactacacacttgttg Alignment from CESAR GAGGATGGTCGGTATGAAGGCCCAACCTTGGCACATGCTGTGGAGTTGTTTGGTGGTAGGCGGTGGAGCACTAGAAACCCCAGCCCTGGAATGTCAGCAAAGAATGCTGAGAAGCCCAACATGCAGAGAAACAACACCCTGGGCATAAGCACCACCAAGAAAAAGAAGAAAATGCTCATGAGG catcttcattcttggtggtccctgtccctcatttctgtttctgggcatagGAAGATGGACGTTATGAAGGTGCAGCTCTGGCACCTGCA---GAGTTGTTTGGTGGTAGGAGGTGGACTACCAGAAATCCTAGCCCTGGTATGTCAGCAAAAAATGCTGAGAAGCCAAATATGCCAAGGAACAATACTCTGGGCATAAGTACCACAAAGAAGAAAAAGAAAATGCTCATAAGGgtaagcctggtcccagagtctgtgctaaatctctaactacacacttgttg Alignment from Spaln_aa2Genome GAGGATGGTCGGTATGAAGGCCCAACCTTGGCACATGCTGTGGAGTTGTTTGGTGGTAGGCGGTGGAGCACTAGAAACCCCAGCCCTGGAATGTCAGCAAAGAATGCTGAGAAGCCCAACATGCAGAGAAACAACACCCTGGGCATAAGCACCACCAAGAAAAAGAAGAAAATGCTCATGAGG catcttcattcttggtggtccctgtccctcatttctgtttctgggcatagGAAGATGGACGTTATGAAGGTGCAGCTCTGGCACCTGCA---GAGTTGTTTGGTGGTAGGAGGTGGACTACCAGAAATCCTAGCCCTGGTATGTCAGCAAAAAATGCTGAGAAGCCAAATATGCCAAGGAACAATACTCTGGGCATAAGTACCACAAAGAAGAAAAAGAAAATGCTCATAAGGgtaagcctggtcccagagtctgtgctaaatctctaactacacacttgttg Alignment from Spaln_nt2Genome GAGGATGGTCGGTATGAAGGCCCAACCTTGGCACATGCTGTGGAGTTGTTTGGTGGTAGGCGGTGGAGCACTAGAAACCCCAGCCCTGGAATGTCAGCAAAGAATGCTGAGAAGCCCAACATGCAGAGAAACAACACCCTGGGCATAAGCACCACCAAGAAAAAGAAGAAAATGCTCATGAGG catcttcattcttggtggtccctgtccctcatttctgtttctgggcatagGAAGATGGACGTTATGAAGGTGCAGCTCTGGCAC---CTGCAGAGTTGTTTGGTGGTAGGAGGTGGACTACCAGAAATCCTAGCCCTGGTATGTCAGCAAAAAATGCTGAGAAGCCAAATATGCCAAGGAACAATACTCTGGGCATAAGTACCACAAAGAAGAAAAAGAAAATGCTCATAAGGgtaagcctggtcccagagtctgtgctaaatctctaactacacacttgttg Alignment from Pairagon GAGGATGGTCGGTATGAAGGCCCAACCTTGGCACATGCTGTGGAGTTGTTTGGTGGTAGGCGGTGGAGCACTAGAAACCCCAGCCCTGGAATGTCAGCAAAGAATGCTGAGAAGCCCAACATGCAGAGAAACAACACCCTGGGCATAAGCACCACCAAGAAAAAGAAGAAAATGCTCATGAGG catcttcattcttggtggtccctgtccctcatttctgtttctgggcatagGAAGATGGACGTTATGAAGGTGCAGCTCTGGCAC---CTGCAGAGTTGTTTGGTGGTAGGAGGTGGACTACCAGAAATCCTAGCCCTGGTATGTCAGCAAAAAATGCTGAGAAGCCAAATATGCCAAGGAACAATACTCTGGGCATAAGTACCACAAAGAAGAAAAAGAAAATGCTCATAAGGgtaagcctggtcccagagtctgtgctaaatctctaactacacacttgttg Alignment from Exonerate_protein2genome GAGGATGGTCGGTATGAAGGCCCAACCTTGGCACATGCTGTGGAGTTGTTTGGTGGTAGGCGGTGGAGCACTAGAAACCCCAGCCCTGGAATGTCAGCAAAGAATGCTGAGAAGCCCAACATGCAGAGAAACAACACCCTGGGCATAAGCACCACCAAGAAAAAGAAGAAAATGCTCATGAGG catcttcattcttggtggtccctgtccctcatttctgtttctgggcatagGAAGATGGACGTTATGAAGGTGCAGCTCTGGCACCTGCA---GAGTTGTTTGGTGGTAGGAGGTGGACTACCAGAAATCCTAGCCCTGGTATGTCAGCAAAAAATGCTGAGAAGCCAAATATGCCAAGGAACAATACTCTGGGCATAAGTACCACAAAGAAGAAAAAGAAAATGCTCATAAGGgtaagcctggtcccagagtctgtgctaaatctctaactacacacttgttg Alignment from Exonerate_coding2genome GAGGATGGTCGGTATGAAGGCCCAACCTTGGCACATGCTGTGGAGTTGTTTGGTGGTAGGCGGTGGAGCACTAGAAACCCCAGCCCTGGAATGTCAGCAAAGAATGCTGAGAAGCCCAACATGCAGAGAAACAACACCCTGGGCATAAGCACCACCAAGAAAAAGAAGAAAATGCTCATGAGG catcttcattcttggtggtccctgtccctcatttctgtttctgggcatagGAAGATGGACGTTATGAAGGTGCAGCTCTGGCACCTGCA---GAGTTGTTTGGTGGTAGGAGGTGGACTACCAGAAATCCTAGCCCTGGTATGTCAGCAAAAAATGCTGAGAAGCCAAATATGCCAAGGAACAATACTCTGGGCATAAGTACCACAAAGAAGAAAAAGAAAATGCTCATAAGGgtaagcctggtcccagagtctgtgctaaatctctaactacacacttgttg Alignment from GeneWise ATGGTCGGTATGAAGGCCCAACCTTGGCACATGCTGTGGAGTTGTTTGGTGGTAGGCGGTGGAGCACTAGAAACCCCAGCCCTGGAATGTCAGCAAAGAATGCTGAGAAGCCCAACATGCAGAGAAACAACACCCTGGGCATAAGCACCACCAAGAAAAAGAAGAAAATGCTCATGAGG catcttcattcttggtggtccctgtccctcatttctgtttctgggcataggaagATGGACGTTATGAAGGTGCAGCTCTGGCACCTGCA---GAGTTGTTTGGTGGTAGGAGGTGGACTACCAGAAATCCTAGCCCTGGTATGTCAGCAAAAAATGCTGAGAAGCCAAATATGCCAAGGAACAATACTCTGGGCATAAGTACCACAAAGAAGAAAAAGAAAATGCTCATAAGGgtaagcctggtcccagagtctgtgctaaatctctaactacacacttgttg #### Plce1_ID7627_13 --> 2 - 0 Original Alignment atTTGCTGACTAGAAACGTCTCCGACCTGGGGCTGTTCATTAAAAGTAAACAGCAGCTTTCTGACAACCAGAGGCAGATATCTGATGCTATCGCTGCTGCAAGCATCGTGACCAATGGTACTGGGATTGAAAGCACGTCCCTGGGCATATTTGGGGTCGGCATACTCCAGCTCAATGACTTCCTGGTGAATTGCCAAGGAGAACACTGCACATATGATGAAATCCTGAGCATCATCCAG tcatggttaatcactatctctggaggcacagtggcctgctgtcattacagatTTGCTGACTAAAAACGTCTCTGATTTAGGGCTATTCATCAAAAGTAAACAGCAGCTTTCTGATAACCAGAGGCAGATGGCTGATGCTATCGCTGCTGCAAGCATTGTGATGAATGGTACTGGGATTGAAAGCATGTTCCTTGGCATATTTGGTGTTGGCATACTCCAGCTTAATGACTTTCTGGTGAATTGCCAGGGTGAGCATTGCACATATGATGAAGTTCTGAGCATCATCCAGgtatgtatatacttgtctgacacatagtattgcatattggcatcaccaga Alignment from CESAR atTTGCTGACTAGAAACGTCTCCGACCTGGGGCTGTTCATTAAAAGTAAACAGCAGCTTTCTGACAACCAGAGGCAGATATCTGATGCTATCGCTGCTGCAAGCATCGTGACCAATGGTACTGGGATTGAAAGCACGTCCCTGGGCATATTTGGGGTCGGCATACTCCAGCTCAATGACTTCCTGGTGAATTGCCAAGGAGAACACTGCACATATGATGAAATCCTGAGCATCATCCAG tcatggttaatcactatctctggaggcacagtggcctgctgtcattacagatTTGCTGACTAAAAACGTCTCTGATTTAGGGCTATTCATCAAAAGTAAACAGCAGCTTTCTGATAACCAGAGGCAGATGGCTGATGCTATCGCTGCTGCAAGCATTGTGATGAATGGTACTGGGATTGAAAGCATGTTCCTTGGCATATTTGGTGTTGGCATACTCCAGCTTAATGACTTTCTGGTGAATTGCCAGGGTGAGCATTGCACATATGATGAAGTTCTGAGCATCATCCAGgtatgtatatacttgtctgacacatagtattgcatattggcatcaccaga Alignment from Spaln_aa2Genome ATTTGCTGACTAGAAACGTCTCCGACCTGGGGCTGTTCATTAAAAGTAAACAGCAGCTTTCTGACAACCAGAGGCAGATATCTGATGCTATCGCTGCTGCAAGCATCGTGACCAATGGTACTGGGATTGAAAGCACGTCCCTGGGCATATTTGGGGTCGGCATACTCCAGCTCAATGACTTCCTGGTGAATTGCCAAGGAGAACACTGCACATATGATGAAATCCTGAGCATCATCCAG tcatggttaatcactatctctggaggcacagtggcctgctgtcattacagATTTGCTGACTAAAAACGTCTCTGATTTAGGGCTATTCATCAAAAGTAAACAGCAGCTTTCTGATAACCAGAGGCAGATGGCTGATGCTATCGCTGCTGCAAGCATTGTGATGAATGGTACTGGGATTGAAAGCATGTTCCTTGGCATATTTGGTGTTGGCATACTCCAGCTTAATGACTTTCTGGTGAATTGCCAGGGTGAGCATTGCACATATGATGAAGTTCTGAGCATCATCCAGgtatgtatatacttgtctgacacatagtattgcatattggcatcaccaga Alignment from Spaln_nt2Genome ATTTGCTGACTAGAAACGTCTCCGACCTGGGGCTGTTCATTAAAAGTAAACAGCAGCTTTCTGACAACCAGAGGCAGATATCTGATGCTATCGCTGCTGCAAGCATCGTGACCAATGGTACTGGGATTGAAAGCACGTCCCTGGGCATATTTGGGGTCGGCATACTCCAGCTCAATGACTTCCTGGTGAATTGCCAAGGAGAACACTGCACATATGATGAAATCCTGAGCATCATCCAG tcatggttaatcactatctctggaggcacagtggcctgctgtcattacagATTTGCTGACTAAAAACGTCTCTGATTTAGGGCTATTCATCAAAAGTAAACAGCAGCTTTCTGATAACCAGAGGCAGATGGCTGATGCTATCGCTGCTGCAAGCATTGTGATGAATGGTACTGGGATTGAAAGCATGTTCCTTGGCATATTTGGTGTTGGCATACTCCAGCTTAATGACTTTCTGGTGAATTGCCAGGGTGAGCATTGCACATATGATGAAGTTCTGAGCATCATCCAGgtatgtatatacttgtctgacacatagtattgcatattggcatcaccaga Alignment from Pairagon ATTTGCTGACTAGAAACGTCTCCGACCTGGGGCTGTTCATTAAAAGTAAACAGCAGCTTTCTGACAACCAGAGGCAGATATCTGATGCTATCGCTGCTGCAAGCATCGTGACCAATGGTACTGGGATTGAAAGCACGTCCCTGGGCATATTTGGGGTCGGCATACTCCAGCTCAATGACTTCCTGGTGAATTGCCAAGGAGAACACTGCACATATGATGAAATCCTGAGCATCATCCAG tcatggttaatcactatctctggaggcacagtggcctgctgtcattacagATTTGCTGACTAAAAACGTCTCTGATTTAGGGCTATTCATCAAAAGTAAACAGCAGCTTTCTGATAACCAGAGGCAGATGGCTGATGCTATCGCTGCTGCAAGCATTGTGATGAATGGTACTGGGATTGAAAGCATGTTCCTTGGCATATTTGGTGTTGGCATACTCCAGCTTAATGACTTTCTGGTGAATTGCCAGGGTGAGCATTGCACATATGATGAAGTTCTGAGCATCATCCAGgtatgtatatacttgtctgacacatagtattgcatattggcatcaccaga Alignment from Exonerate_protein2genome ATTTGCTGACTAGAAACGTCTCCGACCTGGGGCTGTTCATTAAAAGTAAACAGCAGCTTTCTGACAACCAGAGGCAGATATCTGATGCTATCGCTGCTGCAAGCATCGTGACCAATGGTACTGGGATTGAAAGCACGTCCCTGGGCATATTTGGGGTCGGCATACTCCAGCTCAATGACTTCCTGGTGAATTGCCAAGGAGAACACTGCACATATGATGAAATCCTGAGCATCATCCAG tcatggttaatcactatctctggaggcacagtggcctgctgtcattacagATTTGCTGACTAAAAACGTCTCTGATTTAGGGCTATTCATCAAAAGTAAACAGCAGCTTTCTGATAACCAGAGGCAGATGGCTGATGCTATCGCTGCTGCAAGCATTGTGATGAATGGTACTGGGATTGAAAGCATGTTCCTTGGCATATTTGGTGTTGGCATACTCCAGCTTAATGACTTTCTGGTGAATTGCCAGGGTGAGCATTGCACATATGATGAAGTTCTGAGCATCATCCAGgtatgtatatacttgtctgacacatagtattgcatattggcatcaccaga Alignment from Exonerate_coding2genome ATTTGCTGACTAGAAACGTCTCCGACCTGGGGCTGTTCATTAAAAGTAAACAGCAGCTTTCTGACAACCAGAGGCAGATATCTGATGCTATCGCTGCTGCAAGCATCGTGACCAATGGTACTGGGATTGAAAGCACGTCCCTGGGCATATTTGGGGTCGGCATACTCCAGCTCAATGACTTCCTGGTGAATTGCCAAGGAGAACACTGCACATATGATGAAATCCTGAGCATCATCCAG tcatggttaatcactatctctggaggcacagtggcctgctgtcattacagATTTGCTGACTAAAAACGTCTCTGATTTAGGGCTATTCATCAAAAGTAAACAGCAGCTTTCTGATAACCAGAGGCAGATGGCTGATGCTATCGCTGCTGCAAGCATTGTGATGAATGGTACTGGGATTGAAAGCATGTTCCTTGGCATATTTGGTGTTGGCATACTCCAGCTTAATGACTTTCTGGTGAATTGCCAGGGTGAGCATTGCACATATGATGAAGTTCTGAGCATCATCCAGgtatgtatatacttgtctgacacatagtattgcatattggcatcaccaga Alignment from GeneWise ATTTGCTGACTAGAAACGTCTCCGACCTGGGGCTGTTCATTAAAAGTAAACAGCAGCTTTCTGACAACCAGAGGCAGATATCTGATGCTATCGCTGCTGCAAGCATCGTGACCAATGGTACTGGGATTGAAAGCACGTCCCTGGGCATATTTGGGGTCGGCATACTCCAGCTCAATGACTTCCTGGTGAATTGCCAAGGAGAACACTGCACATATGATGAAATCCTGAGCATCATCCAG tcatggttaatcactatctctggaggcacagtggcctgctgtcattacagATTTGCTGACTAAAAACGTCTCTGATTTAGGGCTATTCATCAAAAGTAAACAGCAGCTTTCTGATAACCAGAGGCAGATGGCTGATGCTATCGCTGCTGCAAGCATTGTGATGAATGGTACTGGGATTGAAAGCATGTTCCTTGGCATATTTGGTGTTGGCATACTCCAGCTTAATGACTTTCTGGTGAATTGCCAGGGTGAGCATTGCACATATGATGAAGTTCTGAGCATCATCCAGgtatgtatatacttgtctgacacatagtattgcatattggcatcaccaga #### Plce1_ID7634_17 --> 0 - 0 Original Alignment GAAGTGGTGGAAGCCATCGATCGCAGTGCCTTCATCACCTCAGACCTGCCAATCATCATATCCATTGAGAACCATTGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAG ccttatgccaccaatagaaaccagtctgacaggctgtgcatcctttccagGAAGTGGTGGAAGCCATTGATCGCAGTGCTTTCGTAACATCAGACCTACCAATCATCATATCTATTGAGAACCAATGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAGgtaagttttcggagagatcaacattgaacagttgaagtgaaaattagtaa Alignment from CESAR GAAGTGGTGGAAGCCATCGATCGCAGTGCCTTCATCACCTCAGACCTGCCAATCATCATATCCATTGAGAACCATTGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAG ccttatgccaccaatagaaaccagtctgacaggctgtgcatcctttccagGAAGTGGTGGAAGCCATTGATCGCAGTGCTTTCGTAACATCAGACCTACCAATCATCATATCTATTGAGAACCAATGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAGgtaagttttcggagagatcaacattgaacagttgaagtgaaaattagtaa Alignment from Spaln_aa2Genome GAAGTGGTGGAAGCCATCGATCGCAGTGCCTTCATCACCTCAGACCTGCCAATCATCATATCCATTGAGAACCATTGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAG ccttatgccaccaatagaaaccagtctgacaggctgtgcatcctttccagGAAGTGGTGGAAGCCATTGATCGCAGTGCTTTCGTAACATCAGACCTACCAATCATCATATCTATTGAGAACCAATGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAGgtaagttttcggagagatcaacattgaacagttgaagtgaaaattagtaa Alignment from Spaln_nt2Genome GAAGTGGTGGAAGCCATCGATCGCAGTGCCTTCATCACCTCAGACCTGCCAATCATCATATCCATTGAGAACCATTGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAG ccttatgccaccaatagaaaccagtctgacaggctgtgcatcctttccagGAAGTGGTGGAAGCCATTGATCGCAGTGCTTTCGTAACATCAGACCTACCAATCATCATATCTATTGAGAACCAATGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAGgtaagttttcggagagatcaacattgaacagttgaagtgaaaattagtaa Alignment from Pairagon GAAGTGGTGGAAGCCATCGATCGCAGTGCCTTCATCACCTCAGACCTGCCAATCATCATATCCATTGAGAACCATTGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAG ccttatgccaccaatagaaaccagtctgacaggctgtgcatcctttccagGAAGTGGTGGAAGCCATTGATCGCAGTGCTTTCGTAACATCAGACCTACCAATCATCATATCTATTGAGAACCAATGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAGgtaagttttcggagagatcaacattgaacagttgaagtgaaaattagtaa Alignment from Exonerate_protein2genome GAAGTGGTGGAAGCCATCGATCGCAGTGCCTTCATCACCTCAGACCTGCCAATCATCATATCCATTGAGAACCATTGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAG ccttatgccaccaatagaaaccagtctgacaggctgtgcatcctttccagGAAGTGGTGGAAGCCATTGATCGCAGTGCTTTCGTAACATCAGACCTACCAATCATCATATCTATTGAGAACCAATGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAGgtaagttttcggagagatcaacattgaacagttgaagtgaaaattagtaa Alignment from Exonerate_coding2genome GAAGTGGTGGAAGCCATCGATCGCAGTGCCTTCATCACCTCAGACCTGCCAATCATCATATCCATTGAGAACCATTGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAG ccttatgccaccaatagaaaccagtctgacaggctgtgcatcctttccagGAAGTGGTGGAAGCCATTGATCGCAGTGCTTTCGTAACATCAGACCTACCAATCATCATATCTATTGAGAACCAATGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAGgtaagttttcggagagatcaacattgaacagttgaagtgaaaattagtaa Alignment from GeneWise GAAGTGGTGGAAGCCATCGATCGCAGTGCCTTCATCACCTCAGACCTGCCAATCATCATATCCATTGAGAACCATTGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAG ccttatgccaccaatagaaaccagtctgacaggctgtgcatcctttccagGAAGTGGTGGAAGCCATTGATCGCAGTGCTTTCGTAACATCAGACCTACCAATCATCATATCTATTGAGAACCAATGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAGgtaagttttcggagagatcaacattgaacagttgaagtgaaaattagtaa #### Plce1_ID7645_27 --> 0 - 0 Original Alignment ATGTTTAATACTGAAGAGAGGAAATGTTCTCAGACTCACAAAGTCACAGTGCATGGTGTCCCAGGTCCAGAGCCCTTTGCTGTTTTCACTATAAACGAAGGCACCAAGGCAAAGCAGCTTCTCCAACAG ttctgcgaaaactgtctagccatatgtacacatattgtctttgtgatcagATGTTTAATACTGAGGAGAGGAAATGTTCACAGACTCATCGAATCACCGTATATGGTGTTCCAGGTCCCGAACCCTTTGCTGTCTTCACTATAAATGAGGGCAGCAAGGCAAAGCAGCTTCTCCAACAGgtaagcgaacactccacaattcatggttaatgatgggtaagttctagcaa Alignment from CESAR ATGTTTAATACTGAAGAGAGGAAATGTTCTCAGACTCACAAAGTCACAGTGCATGGTGTCCCAGGTCCAGAGCCCTTTGCTGTTTTCACTATAAACGAAGGCACCAAGGCAAAGCAGCTTCTCCAACAG ttctgcgaaaactgtctagccatatgtacacatattgtctttgtgatcagATGTTTAATACTGAGGAGAGGAAATGTTCACAGACTCATCGAATCACCGTATATGGTGTTCCAGGTCCCGAACCCTTTGCTGTCTTCACTATAAATGAGGGCAGCAAGGCAAAGCAGCTTCTCCAACAGgtaagcgaacactccacaattcatggttaatgatgggtaagttctagcaa Alignment from Spaln_aa2Genome ATGTTTAATACTGAAGAGAGGAAATGTTCTCAGACTCACAAAGTCACAGTGCATGGTGTCCCAGGTCCAGAGCCCTTTGCTGTTTTCACTATAAACGAAGGCACCAAGGCAAAGCAGCTTCTCCAACAG ttctgcgaaaactgtctagccatatgtacacatattgtctttgtgatcagATGTTTAATACTGAGGAGAGGAAATGTTCACAGACTCATCGAATCACCGTATATGGTGTTCCAGGTCCCGAACCCTTTGCTGTCTTCACTATAAATGAGGGCAGCAAGGCAAAGCAGCTTCTCCAACAGgtaagcgaacactccacaattcatggttaatgatgggtaagttctagcaa Alignment from Spaln_nt2Genome ATGTTTAATACTGAAGAGAGGAAATGTTCTCAGACTCACAAAGTCACAGTGCATGGTGTCCCAGGTCCAGAGCCCTTTGCTGTTTTCACTATAAACGAAGGCACCAAGGCAAAGCAGCTTCTCCAACAG ttctgcgaaaactgtctagccatatgtacacatattgtctttgtgatcagATGTTTAATACTGAGGAGAGGAAATGTTCACAGACTCATCGAATCACCGTATATGGTGTTCCAGGTCCCGAACCCTTTGCTGTCTTCACTATAAATGAGGGCAGCAAGGCAAAGCAGCTTCTCCAACAGgtaagcgaacactccacaattcatggttaatgatgggtaagttctagcaa Alignment from Pairagon ATGTTTAATACTGAAGAGAGGAAATGTTCTCAGACTCACAAAGTCACAGTGCATGGTGTCCCAGGTCCAGAGCCCTTTGCTGTTTTCACTATAAACGAAGGCACCAAGGCAAAGCAGCTTCTCCAACAG ttctgcgaaaactgtctagccatatgtacacatattgtctttgtgatcagATGTTTAATACTGAGGAGAGGAAATGTTCACAGACTCATCGAATCACCGTATATGGTGTTCCAGGTCCCGAACCCTTTGCTGTCTTCACTATAAATGAGGGCAGCAAGGCAAAGCAGCTTCTCCAACAGgtaagcgaacactccacaattcatggttaatgatgggtaagttctagcaa Alignment from Exonerate_protein2genome ATGTTTAATACTGAAGAGAGGAAATGTTCTCAGACTCACAAAGTCACAGTGCATGGTGTCCCAGGTCCAGAGCCCTTTGCTGTTTTCACTATAAACGAAGGCACCAAGGCAAAGCAGCTTCTCCAACAG ttctgcgaaaactgtctagccatatgtacacatattgtctttgtgatcagATGTTTAATACTGAGGAGAGGAAATGTTCACAGACTCATCGAATCACCGTATATGGTGTTCCAGGTCCCGAACCCTTTGCTGTCTTCACTATAAATGAGGGCAGCAAGGCAAAGCAGCTTCTCCAACAGgtaagcgaacactccacaattcatggttaatgatgggtaagttctagcaa Alignment from Exonerate_coding2genome ATGTTTAATACTGAAGAGAGGAAATGTTCTCAGACTCACAAAGTCACAGTGCATGGTGTCCCAGGTCCAGAGCCCTTTGCTGTTTTCACTATAAACGAAGGCACCAAGGCAAAGCAGCTTCTCCAACAG ttctgcgaaaactgtctagccatatgtacacatattgtctttgtgatcagATGTTTAATACTGAGGAGAGGAAATGTTCACAGACTCATCGAATCACCGTATATGGTGTTCCAGGTCCCGAACCCTTTGCTGTCTTCACTATAAATGAGGGCAGCAAGGCAAAGCAGCTTCTCCAACAGgtaagcgaacactccacaattcatggttaatgatgggtaagttctagcaa Alignment from GeneWise ATGTTTAATACTGAAGAGAGGAAATGTTCTCAGACTCACAAAGTCACAGTGCATGGTGTCCCAGGTCCAGAGCCCTTTGCTGTTTTCACTATAAACGAAGGCACCAAGGCAAAGCAGCTTCTCCAACAG ttctgcgaaaactgtctagccatatgtacacatattgtctttgtgatcagATGTTTAATACTGAGGAGAGGAAATGTTCACAGACTCATCGAATCACCGTATATGGTGTTCCAGGTCCCGAACCCTTTGCTGTCTTCACTATAAATGAGGGCAGCAAGGCAAAGCAGCTTCTCCAACAGgtaagcgaacactccacaattcatggttaatgatgggtaagttctagcaa #### Plce1_ID7647_28 --> 0 - 0 Original Alignment GTTTTGGCAGTTGACCAAGACACCAAATGTACTGCCACAGACTATTTTTTGATGGAAGAGAAGCATTTTATATCTAAGGAAAAGAATGAATGCAGGAAACAACCATTCCAGAGAGCTGTGGGTCCAGAAGAAGATATTGTGCAGATTTTAAACAGTTGGTTCCCAGAAGAAGGCTACGTAGGCAGGATTGTCTTAAAGCCCCAACAGGAA gggttccgattctgccaagtggtcttgctgtttcacactgttcctaacagGTTCTAGCAGTTGACCAAGACACTAAATGTACCGCCACTGACTGTTTTTTGATGGAGGAAAAGCACTTTATATCCAAAGAAAAGAATGAATGCAGGAAACAGCCATTTCAGAGGACAGTGACCCCAGAAAGGGATATTGTGCAGATCTTGAACAGGTGGTTCCATGAAGAGGGTTACGTAGGTAGAATTCTTTTAAGGCCTCAACAGGATgtgagatatcctagattcagtataagtggttggatcaccttttgctaatt Alignment from CESAR GTTTTGGCAGTTGACCAAGACACCAAATGTACTGCCACAGACTATTTTTTGATGGAAGAGAAGCATTTTATATCTAAGGAAAAGAATGAATGCAGGAAACAACCATTCCAGAGAGCTGTGGGTCCAGAAGAAGATATTGTGCAGATTTTAAACAGTTGGTTCCCAGAAGAAGGCTACGTAGGCAGGATTGTCTTAAAGCCCCAACAGGAA gggttccgattctgccaagtggtcttgctgtttcacactgttcctaacagGTTCTAGCAGTTGACCAAGACACTAAATGTACCGCCACTGACTGTTTTTTGATGGAGGAAAAGCACTTTATATCCAAAGAAAAGAATGAATGCAGGAAACAGCCATTTCAGAGGACAGTGACCCCAGAAAGGGATATTGTGCAGATCTTGAACAGGTGGTTCCATGAAGAGGGTTACGTAGGTAGAATTCTTTTAAGGCCTCAACAGGATgtgagatatcctagattcagtataagtggttggatcaccttttgctaatt Alignment from Spaln_aa2Genome GTTTTGGCAGTTGACCAAGACACCAAATGTACTGCCACAGACTATTTTTTGATGGAAGAGAAGCATTTTATATCTAAGGAAAAGAATGAATGCAGGAAACAACCATTCCAGAGAGCTGTGGGTCCAGAAGAAGATATTGTGCAGATTTTAAACAGTTGGTTCCCAGAAGAAGGCTACGTAGGCAGGATTGTCTTAAAGCCCCAACAGGAA gggttccgattctgccaagtggtcttgctgtttcacactgttcctaacagGTTCTAGCAGTTGACCAAGACACTAAATGTACCGCCACTGACTGTTTTTTGATGGAGGAAAAGCACTTTATATCCAAAGAAAAGAATGAATGCAGGAAACAGCCATTTCAGAGGACAGTGACCCCAGAAAGGGATATTGTGCAGATCTTGAACAGGTGGTTCCATGAAGAGGGTTACGTAGGTAGAATTCTTTTAAGGCCTCAACAGGATgtgagatatcctagattcagtataagtggttggatcaccttttgctaatt Alignment from Spaln_nt2Genome GTTTTGGCAGTTGACCAAGACACCAAATGTACTGCCACAGACTATTTTTTGATGGAAGAGAAGCATTTTATATCTAAGGAAAAGAATGAATGCAGGAAACAACCATTCCAGAGAGCTGTGGGTCCAGAAGAAGATATTGTGCAGATTTTAAACAGTTGGTTCCCAGAAGAAGGCTACGTAGGCAGGATTGTCTTAAAGCCCCAACAGGAA gggttccgattctgccaagtggtcttgctgtttcacactgttcctaacagGTTCTAGCAGTTGACCAAGACACTAAATGTACCGCCACTGACTGTTTTTTGATGGAGGAAAAGCACTTTATATCCAAAGAAAAGAATGAATGCAGGAAACAGCCATTTCAGAGGACAGTGACCCCAGAAAGGGATATTGTGCAGATCTTGAACAGGTGGTTCCATGAAGAGGGTTACGTAGGTAGAATTCTTTTAAGGCCTCAACAGGATgtgagatatcctagattcagtataagtggttggatcaccttttgctaatt Alignment from Pairagon GTTTTGGCAGTTGACCAAGACACCAAATGTACTGCCACAGACTATTTTTTGATGGAAGAGAAGCATTTTATATCTAAGGAAAAGAATGAATGCAGGAAACAACCATTCCAGAGAGCTGTGGGTCCAGAAGAAGATATTGTGCAGATTTTAAACAGTTGGTTCCCAGAAGAAGGCTACGTAGGCAGGATTGTCTTAAAGCCCCAACAGGAA gggttccgattctgccaagtggtcttgctgtttcacactgttcctaacagGTTCTAGCAGTTGACCAAGACACTAAATGTACCGCCACTGACTGTTTTTTGATGGAGGAAAAGCACTTTATATCCAAAGAAAAGAATGAATGCAGGAAACAGCCATTTCAGAGGACAGTGACCCCAGAAAGGGATATTGTGCAGATCTTGAACAGGTGGTTCCATGAAGAGGGTTACGTAGGTAGAATTCTTTTAAGGCCTCAACAGGATgtgagatatcctagattcagtataagtggttggatcaccttttgctaatt Alignment from Exonerate_protein2genome GTTTTGGCAGTTGACCAAGACACCAAATGTACTGCCACAGACTATTTTTTGATGGAAGAGAAGCATTTTATATCTAAGGAAAAGAATGAATGCAGGAAACAACCATTCCAGAGAGCTGTGGGTCCAGAAGAAGATATTGTGCAGATTTTAAACAGTTGGTTCCCAGAAGAAGGCTACGTAGGCAGGATTGTCTTAAAGCCCCAACAGGAA gggttccgattctgccaagtggtcttgctgtttcacactgttcctaacagGTTCTAGCAGTTGACCAAGACACTAAATGTACCGCCACTGACTGTTTTTTGATGGAGGAAAAGCACTTTATATCCAAAGAAAAGAATGAATGCAGGAAACAGCCATTTCAGAGGACAGTGACCCCAGAAAGGGATATTGTGCAGATCTTGAACAGGTGGTTCCATGAAGAGGGTTACGTAGGTAGAATTCTTTTAAGGCCTCAACAGGATgtgagatatcctagattcagtataagtggttggatcaccttttgctaatt Alignment from Exonerate_coding2genome GTTTTGGCAGTTGACCAAGACACCAAATGTACTGCCACAGACTATTTTTTGATGGAAGAGAAGCATTTTATATCTAAGGAAAAGAATGAATGCAGGAAACAACCATTCCAGAGAGCTGTGGGTCCAGAAGAAGATATTGTGCAGATTTTAAACAGTTGGTTCCCAGAAGAAGGCTACGTAGGCAGGATTGTCTTAAAGCCCCAACAGGAA gggttccgattctgccaagtggtcttgctgtttcacactgttcctaacagGTTCTAGCAGTTGACCAAGACACTAAATGTACCGCCACTGACTGTTTTTTGATGGAGGAAAAGCACTTTATATCCAAAGAAAAGAATGAATGCAGGAAACAGCCATTTCAGAGGACAGTGACCCCAGAAAGGGATATTGTGCAGATCTTGAACAGGTGGTTCCATGAAGAGGGTTACGTAGGTAGAATTCTTTTAAGGCCTCAACAGGATgtgagatatcctagattcagtataagtggttggatcaccttttgctaatt Alignment from GeneWise GTTTTGGCAGTTGACCAAGACACCAAATGTACTGCCACAGACTATTTTTTGATGGAAGAGAAGCATTTTATATCTAAGGAAAAGAATGAATGCAGGAAACAACCATTCCAGAGAGCTGTGGGTCCAGAAGAAGATATTGTGCAGATTTTAAACAGTTGGTTCCCAGAAGAAGGCTACGTAGGCAGGATTGTCTTAAAGCCCCAACAGGAA gggttccgattctgccaagtggtcttgctgtttcacactgttcctaacagGTTCTAGCAGTTGACCAAGACACTAAATGTACCGCCACTGACTGTTTTTTGATGGAGGAAAAGCACTTTATATCCAAAGAAAAGAATGAATGCAGGAAACAGCCATTTCAGAGGACAGTGACCCCAGAAAGGGATATTGTGCAGATCTTGAACAGGTGGTTCCATGAAGAGGGTTACGTAGGTAGAATTCTTTTAAGGCCTCAACAGGATgtgagatatcctagattcagtataagtggttggatcaccttttgctaatt #### Plekhs1_ID12097_2 --> 2 - 0 Original Alignment gcAAACAATTTACATTTGATTATGAAAATGAAGTCCATAAACGGGATTACTTCATTAAGTCGCCGCCCCCTCAGCTCTTCTTCTCTGGG aaacttttgatcaaaatgcaaacagagtactgttggctgtcctttcacaggcAAACAATTTACATTTGATTATGAGAATGAGGTTGATAAACGAGATCACTTTATTAAATCGCCATCCCCTCAACTTTTCTTCTCTGGGgtaattaattgcattggctttactgacattaactagtgcaaaactttgta Alignment from CESAR gcAAACAATTTACATTTGATTATGAAAATGAAGTCCATAAACGGGATTACTTCATTAAGTCGCCGCCCCCTCAGCTCTTCTTCTCTGGG aaacttttgatcaaaatgcaaacagagtactgttggctgtcctttcacaggcAAACAATTTACATTTGATTATGAGAATGAGGTTGATAAACGAGATCACTTTATTAAATCGCCATCCCCTCAACTTTTCTTCTCTGGGgtaattaattgcattggctttactgacattaactagtgcccaaaagctta Alignment from Spaln_aa2Genome GCAAACAATTTACATTTGATTATGAAAATGAAGTCCATAAACGGGATTACTTCATTAAGTCGCCGCCCCCTCAGCTCTTCTTCTCTGGG aaacttttgatcaaaatgcaaacagagtactgttggctgtcctttcacagGCAAACAATTTACATTTGATTATGAGAATGAGGTTGATAAACGAGATCACTTTATTAAATCGCCATCCCCTCAACTTTTCTTCTCTGGGgtaattaattgcattggctttactgacattaactagtgcaaaactttgta Alignment from Spaln_nt2Genome GCAAACAATTTACATTTGATTATGAAAATGAAGTCCATAAACGGGATTACTTCATTAAGTCGCCGCCCCCTCAGCTCTTCTTCTCTGGG aaacttttgatcaaaatgcaaacagagtactgttggctgtcctttcacagGCAAACAATTTACATTTGATTATGAGAATGAGGTTGATAAACGAGATCACTTTATTAAATCGCCATCCCCTCAACTTTTCTTCTCTGGGgtaattaattgcattggctttactgacattaactagtgcaaaactttgta Alignment from Pairagon GCAAACAATTTACATTTGATTATGAAAATGAAGTCCATAAACGGGATTACTTCATTAAGTCGCCGCCCCCTCAGCTCTTCTTCTCTGGG aaacttttgatcaaaatgcaaacagagtactgttggctgtcctttcacagGCAAACAATTTACATTTGATTATGAGAATGAGGTTGATAAACGAGATCACTTTATTAAATCGCCATCCCCTCAACTTTTCTTCTCTGGGgtaattaattgcattggctttactgacattaactagtgcaaaactttgta Alignment from Exonerate_protein2genome GCAAACAATTTACATTTGATTATGAAAATGAAGTCCATAAACGGGATTACTTCATTAAGTCGCCGCCCCCTCAGCTCTTCTTCTCTGGG aaacttttgatcaaaatgcaaacagagtactgttggctgtcctttcacagGCAAACAATTTACATTTGATTATGAGAATGAGGTTGATAAACGAGATCACTTTATTAAATCGCCATCCCCTCAACTTTTCTTCTCTGGGgtaattaattgcattggctttactgacattaactagtgcaaaactttgta Alignment from Exonerate_coding2genome GCAAACAATTTACATTTGATTATGAAAATGAAGTCCATAAACGGGATTACTTCATTAAGTCGCCGCCCCCTCAGCTCTTCTTCTCTGGG aaacttttgatcaaaatgcaaacagagtactgttggctgtcctttcacagGCAAACAATTTACATTTGATTATGAGAATGAGGTTGATAAACGAGATCACTTTATTAAATCGCCATCCCCTCAACTTTTCTTCTCTGGGgtaattaattgcattggctttactgacattaactagtgcaaaactttgta Alignment from GeneWise GGCAAACAATTTACATTTGATTATGAAAATGAAGTCCATAAACGGGATTACTTCATTAAGTCGCCGCCCCCTCAGCTCTTCTTCTCTGGG aaacttttgatcaaaatgcaaacagagtactgttggctgtcctttcacaGGCAAACAATTTACATTTGATTATGAGAATGAGGTTGATAAACGAGATCACTTTATTAAATCGCCATCCCCTCAACTTTTCTTCTCTGGGgtaattaattgcattggctttactgacattaactagtgcaaaactttgta #### Plekhs1_ID12098_3 --> 0 - 2 Original Alignment ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACgg cattggctttactgacattaactagtgcccaaaagcttacttctgttcagACCTCCTGGAAGAAGCGTTTATTTATACTGTCCCAGAGCCGGGGATCAGGTCTTGGTCTTTCTTATTACAAAGATCATCAACACAGAGGCTCCATTGGAGTTGATaggtatgaatttgggctgatgctcactctaaaagcactagatattgagttcc Alignment from CESAR ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACgg cattggctttactgacattaactagtgcccaaaagcttacttctgttcagACCTCCTGGAAGAAGCGTTTATTTATACTGTCCCAGAGCCGGGGATCAGGTCTTGGTCTTTCTTATTACAAAGATCATCAACACAGAGGCTCCATTGGAGTTGATaggtatgaatttgggctgatgctcactctaaaagcactagatattgagttcc Alignment from Spaln_aa2Genome ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACGG cattggctttactgacattaactagtgcccaaaagcttacttctgttcagACCTCCTGGAAGAAGCGTTTATTTATACTGTCCCAGAGCCGGGGATCAGGTCTTGGTCTTTCTTATTACAAAGATCATCAACACAGAGGCTCCATTGGAGTTGATAGgtatgaatttgggctgatgctcactctaaaagcactagatattgagttcc Alignment from Spaln_nt2Genome ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACGG cattggctttactgacattaactagtgcccaaaagcttacttctgttcagACCTCCTGGAAGAAGCGTTTATTTATACTGTCCCAGAGCCGGGGATCAGGTCTTGGTCTTTCTTATTACAAAGATCATCAACACAGAGGCTCCATTGGAGTTGATAGgtatgaatttgggctgatgctcactctaaaagcactagatattgagttcc Alignment from Pairagon ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACGG cattggctttactgacattaactagtgcccaaaagcttacttctgttcagACCTCCTGGAAGAAGCGTTTATTTATACTGTCCCAGAGCCGGGGATCAGGTCTTGGTCTTTCTTATTACAAAGATCATCAACACAGAGGCTCCATTGGAGTTGATAGgtatgaatttgggctgatgctcactctaaaagcactagatattgagttcc Alignment from Exonerate_protein2genome ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACGG cattggctttactgacattaactagtgcccaaaagcttacttctgttcagACCTCCTGGAAGAAGCGTTTATTTATACTGTCCCAGAGCCGGGGATCAGGTCTTGGTCTTTCTTATTACAAAGATCATCAACACAGAGGCTCCATTGGAGTTGATAGgtatgaatttgggctgatgctcactctaaaagcactagatattgagttcc Alignment from Exonerate_coding2genome ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACGG cattggctttactgacattaactagtgcccaaaagcttacttctgttcagACCTCCTGGAAGAAGCGTTTATTTATACTGTCCCAGAGCCGGGGATCAGGTCTTGGTCTTTCTTATTACAAAGATCATCAACACAGAGGCTCCATTGGAGTTGATAGgtatgaatttgggctgatgctcactctaaaagcactagatattgagttcc Alignment from GeneWise ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACGG cattggctttactgacattaactagtgcccaaaagcttacttctgttcagACCTCCTGGAAGAAGCGTTTATTTATACTGTCCCAGAGCCGGGGATCAGGTCTTGGTCTTTCTTATTACAAAGATCATCAACACAGAGGCTCCATTGGAGTTGATAGgtatgaatttgggctgatgctcactctaaaagcactagatattgagttcc #### Plekhs1_ID12103_8 --> 0 - 2 Original Alignment TTAGAGAATATTGCTGGACCCAATGATTCTGGTGACTCCATCGAATCCAATAGTCCGGACCAAGGTTTCAAGAGAGCGGAGAGCAATTACGTGTCAATGAGATCATTGAGAACCtg cctaaaaccctgacatttaagcccctacacttagtgtttttaattttcagTTGGAAAATATCAAAAGACCTAATGATTCTGGTGACTCTATCACATCGAATAGTCCTGACCAATGTTTCAGAAGAGCAGAGAGCAATTATGTGTCAATGAGATCATTGAGGATCtggtaagttctcctttttttcatgtatatgggatcaaaataatctcaaccag Alignment from CESAR TTAGAGAATATTGCTGGACCCAATGATTCTGGTGACTCCATCGAATCCAATAGTCCGGACCAAGGTTTCAAGAGAGCGGAGAGCAATTACGTGTCAATGAGATCATTGAGAACCtg cctaaaaccctgacatttaagcccctacacttagtgtttttaattttcagTTGGAAAATATCAAAAGACCTAATGATTCTGGTGACTCTATCACATCGAATAGTCCTGACCAATGTTTCAGAAGAGCAGAGAGCAATTATGTGTCAATGAGATCATTGAGGATCtggtaagttctcctttttttcatgtatatgggatcaaaataatctcaaccag Alignment from Spaln_aa2Genome TTAGAGAATATTGCTGGACCCAATGATTCTGGTGACTCCATCGAATCCAATAGTCCGGACCAAGGTTTCAAGAGAGCGGAGAGCAATTACGTGTCAATGAGATCATTGAGAACCTG cctaaaaccctgacatttaagcccctacacttagtgtttttaattttcagTTGGAAAATATCAAAAGACCTAATGATTCTGGTGACTCTATCACATCGAATAGTCCTGACCAATGTTTCAGAAGAGCAGAGAGCAATTATGTGTCAATGAGATCATTGAGGATCTGgtaagttctcctttttttcatgtatatgggatcaaaataatctcaaccag Alignment from Spaln_nt2Genome TTAGAGAATATTGCTGGACCCAATGATTCTGGTGACTCCATCGAATCCAATAGTCCGGACCAAGGTTTCAAGAGAGCGGAGAGCAATTACGTGTCAATGAGATCATTGAGAACCTG cctaaaaccctgacatttaagcccctacacttagtgtttttaattttcagTTGGAAAATATCAAAAGACCTAATGATTCTGGTGACTCTATCACATCGAATAGTCCTGACCAATGTTTCAGAAGAGCAGAGAGCAATTATGTGTCAATGAGATCATTGAGGATCTGgtaagttctcctttttttcatgtatatgggatcaaaataatctcaaccag Alignment from Pairagon TTAGAGAATATTGCTGGACCCAATGATTCTGGTGACTCCATCGAATCCAATAGTCCGGACCAAGGTTTCAAGAGAGCGGAGAGCAATTACGTGTCAATGAGATCATTGAGAACCTG cctaaaaccctgacatttaagcccctacacttagtgtttttaattttcagTTGGAAAATATCAAAAGACCTAATGATTCTGGTGACTCTATCACATCGAATAGTCCTGACCAATGTTTCAGAAGAGCAGAGAGCAATTATGTGTCAATGAGATCATTGAGGATCTGgtaagttctcctttttttcatgtatatgggatcaaaataatctcaaccag Alignment from Exonerate_protein2genome TTAGAGAATATTGCTGGACCCAATGATTCTGGTGACTCCATCGAATCCAATAGTCCGGACCAAGGTTTCAAGAGAGCGGAGAGCAATTACGTGTCAATGAGATCATTGAGAACCTG cctaaaaccctgacatttaagcccctacacttagtgtttttaattttcagTTGGAAAATATCAAAAGACCTAATGATTCTGGTGACTCTATCACATCGAATAGTCCTGACCAATGTTTCAGAAGAGCAGAGAGCAATTATGTGTCAATGAGATCATTGAGGATCTGgtaagttctcctttttttcatgtatatgggatcaaaataatctcaaccag Alignment from Exonerate_coding2genome TTAGAGAATATTGCTGGACCCAATGATTCTGGTGACTCCATCGAATCCAATAGTCCGGACCAAGGTTTCAAGAGAGCGGAGAGCAATTACGTGTCAATGAGATCATTGAGAACCTG cctaaaaccctgacatttaagcccctacacttagtgtttttaattttcagTTGGAAAATATCAAAAGACCTAATGATTCTGGTGACTCTATCACATCGAATAGTCCTGACCAATGTTTCAGAAGAGCAGAGAGCAATTATGTGTCAATGAGATCATTGAGGATCTGgtaagttctcctttttttcatgtatatgggatcaaaataatctcaaccag Alignment from GeneWise TTAGAGAATATTGCTGGACCCAATGATTCTGGTGACTCCATCGAATCCAATAGTCCGGACCAAGGTTTCAAGAGAGCGGAGAGCAATTACGTGTCAATGAGATCATTGAGAACCTG cctaaaaccctgacatttaagcccctacacttagtgtttttaattttcagTTGGAAAATATCAAAAGACCTAATGATTCTGGTGACTCTATCACATCGAATAGTCCTGACCAATGTTTCAGAAGAGCAGAGAGCAATTATGTGTCAATGAGATCATTGAGGATCTGgtaagttctcctttttttcatgtatatgggatcaaaataatctcaaccag #### Pnlip_ID12744_3 --> 0 - 0 Original Alignment CTAATTACTTCAGATGCATCAAACATCAGAAACTCCAATTTCCGAACAAACAGAAAAACCCGTATCATTATCCACGGCTTCATCGACAAGGGAGAAGAAAACTGGCTATCTGACATGTGCAAG ttgtgttaatcatcatgtaacaaaattcacatacatttattttttttcagTTAGCCACTTCAGATGCATCAATTATTAAGAACTCCAACTTCCAACCAAACAGAAAAACCTGTATCATTATCCATGGGTTTATCGATAAGGGAGAGGAAAATTGGATCTCACACACTTGTAAAgtacagcatcctgtttttttggattaggccttattattctcagaactcac Alignment from CESAR CTAATTACTTCAGATGCATCAAACATCAGAAACTCCAATTTCCGAACAAACAGAAAAACCCGTATCATTATCCACGGCTTCATCGACAAGGGAGAAGAAAACTGGCTATCTGACATGTGCAAG ttgtgttaatcatcatgtaacaaaattcacatacatttattttttttcagTTAGCCACTTCAGATGCATCAATTATTAAGAACTCCAACTTCCAACCAAACAGAAAAACCTGTATCATTATCCATGGGTTTATCGATAAGGGAGAGGAAAATTGGATCTCACACACTTGTAAAgtacagcatcctgtttttttggattaggccttattattctcagaactcac Alignment from Spaln_aa2Genome CTAATTACTTCAGATGCATCAAACATCAGAAACTCCAATTTCCGAACAAACAGAAAAACCCGTATCATTATCCACGGCTTCATCGACAAGGGAGAAGAAAACTGGCTATCTGACATGTGCAAG ttgtgttaatcatcatgtaacaaaattcacatacatttattttttttcagTTAGCCACTTCAGATGCATCAATTATTAAGAACTCCAACTTCCAACCAAACAGAAAAACCTGTATCATTATCCATGGGTTTATCGATAAGGGAGAGGAAAATTGGATCTCACACACTTGTAAAgtacagcatcctgtttttttggattaggccttattattctcagaactcac Alignment from Spaln_nt2Genome CTAATTACTTCAGATGCATCAAACATCAGAAACTCCAATTTCCGAACAAACAGAAAAACCCGTATCATTATCCACGGCTTCATCGACAAGGGAGAAGAAAACTGGCTATCTGACATGTGCAAG ttgtgttaatcatcatgtaacaaaattcacatacatttattttttttcagTTAGCCACTTCAGATGCATCAATTATTAAGAACTCCAACTTCCAACCAAACAGAAAAACCTGTATCATTATCCATGGGTTTATCGATAAGGGAGAGGAAAATTGGATCTCACACACTTGTAAAgtacagcatcctgtttttttggattaggccttattattctcagaactcac Alignment from Pairagon CTAATTACTTCAGATGCATCAAACATCAGAAACTCCAATTTCCGAACAAACAGAAAAACCCGTATCATTATCCACGGCTTCATCGACAAGGGAGAAGAAAACTGGCTATCTGACATGTGCAAG ttgtgttaatcatcatgtaacaaaattcacatacatttattttttttcagTTAGCCACTTCAGATGCATCAATTATTAAGAACTCCAACTTCCAACCAAACAGAAAAACCTGTATCATTATCCATGGGTTTATCGATAAGGGAGAGGAAAATTGGATCTCACACACTTGTAAAgtacagcatcctgtttttttggattaggccttattattctcagaactcac Alignment from Exonerate_protein2genome CTAATTACTTCAGATGCATCAAACATCAGAAACTCCAATTTCCGAACAAACAGAAAAACCCGTATCATTATCCACGGCTTCATCGACAAGGGAGAAGAAAACTGGCTATCTGACATGTGCAAG ttgtgttaatcatcatgtaacaaaattcacatacatttattttttttcagTTAGCCACTTCAGATGCATCAATTATTAAGAACTCCAACTTCCAACCAAACAGAAAAACCTGTATCATTATCCATGGGTTTATCGATAAGGGAGAGGAAAATTGGATCTCACACACTTGTAAAgtacagcatcctgtttttttggattaggccttattattctcagaactcac Alignment from Exonerate_coding2genome CTAATTACTTCAGATGCATCAAACATCAGAAACTCCAATTTCCGAACAAACAGAAAAACCCGTATCATTATCCACGGCTTCATCGACAAGGGAGAAGAAAACTGGCTATCTGACATGTGCAAG ttgtgttaatcatcatgtaacaaaattcacatacatttattttttttcagTTAGCCACTTCAGATGCATCAATTATTAAGAACTCCAACTTCCAACCAAACAGAAAAACCTGTATCATTATCCATGGGTTTATCGATAAGGGAGAGGAAAATTGGATCTCACACACTTGTAAAgtacagcatcctgtttttttggattaggccttattattctcagaactcac Alignment from GeneWise CTAATTACTTCAGATGCATCAAACATCAGAAACTCCAATTTCCGAACAAACAGAAAAACCCGTATCATTATCCACGGCTTCATCGACAAGGGAGAAGAAAACTGGCTATCTGACATGTGCAAG ttgtgttaatcatcatgtaacaaaattcacatacatttattttttttcagTTAGCCACTTCAGATGCATCAATTATTAAGAACTCCAACTTCCAACCAAACAGAAAAACCTGTATCATTATCCATGGGTTTATCGATAAGGGAGAGGAAAATTGGATCTCACACACTTGTAAAgtacagcatcctgtttttttggattaggccttattattctcagaactcac #### Pnlip_ID12745_4 --> 0 - 0 Original Alignment AACATGTTCCGAGTGGAGAGTGTGAACTGCATCTGTGTGGACTGGAAAGGCGGTTCCCGAACGACATATACCCAGGCTACCCAGAACGTCCGGGTCGTGGGGGCAGAAGTGGCATTGTTGGTTAACGTTCTGCAG tcagcttctgaggctcaatacaattgccctctctacgttcccactttcagAATATGTTCCATGTGGAAAGTGTGAATTGCATCTGTGCGGACTGGAAGGGTGGTTCCCGTACAACCTACACCCAGGCTACACATAATGCCCGGCTTGTGGGAGCTGAAGTGGCACTGCTGGTTAACGTTTTGCAGgtgcatgatcagttcaggattatgttgatttcatgttgatttccaagtgt Alignment from CESAR AACATGTTCCGAGTGGAGAGTGTGAACTGCATCTGTGTGGACTGGAAAGGCGGTTCCCGAACGACATATACCCAGGCTACCCAGAACGTCCGGGTCGTGGGGGCAGAAGTGGCATTGTTGGTTAACGTTCTGCAG tcagcttctgaggctcaatacaattgccctctctacgttcccactttcagAATATGTTCCATGTGGAAAGTGTGAATTGCATCTGTGCGGACTGGAAGGGTGGTTCCCGTACAACCTACACCCAGGCTACACATAATGCCCGGCTTGTGGGAGCTGAAGTGGCACTGCTGGTTAACGTTTTGCAGgtgcatgatcagttcaggattatgttgatttcatgttgatttccaagtgt Alignment from Spaln_aa2Genome AACATGTTCCGAGTGGAGAGTGTGAACTGCATCTGTGTGGACTGGAAAGGCGGTTCCCGAACGACATATACCCAGGCTACCCAGAACGTCCGGGTCGTGGGGGCAGAAGTGGCATTGTTGGTTAACGTTCTGCAG tcagcttctgaggctcaatacaattgccctctctacgttcccactttcagAATATGTTCCATGTGGAAAGTGTGAATTGCATCTGTGCGGACTGGAAGGGTGGTTCCCGTACAACCTACACCCAGGCTACACATAATGCCCGGCTTGTGGGAGCTGAAGTGGCACTGCTGGTTAACGTTTTGCAGgtgcatgatcagttcaggattatgttgatttcatgttgatttccaagtgt Alignment from Spaln_nt2Genome AACATGTTCCGAGTGGAGAGTGTGAACTGCATCTGTGTGGACTGGAAAGGCGGTTCCCGAACGACATATACCCAGGCTACCCAGAACGTCCGGGTCGTGGGGGCAGAAGTGGCATTGTTGGTTAACGTTCTGCAG tcagcttctgaggctcaatacaattgccctctctacgttcccactttcagAATATGTTCCATGTGGAAAGTGTGAATTGCATCTGTGCGGACTGGAAGGGTGGTTCCCGTACAACCTACACCCAGGCTACACATAATGCCCGGCTTGTGGGAGCTGAAGTGGCACTGCTGGTTAACGTTTTGCAGgtgcatgatcagttcaggattatgttgatttcatgttgatttccaagtgt Alignment from Pairagon AACATGTTCCGAGTGGAGAGTGTGAACTGCATCTGTGTGGACTGGAAAGGCGGTTCCCGAACGACATATACCCAGGCTACCCAGAACGTCCGGGTCGTGGGGGCAGAAGTGGCATTGTTGGTTAACGTTCTGCAG tcagcttctgaggctcaatacaattgccctctctacgttcccactttcagAATATGTTCCATGTGGAAAGTGTGAATTGCATCTGTGCGGACTGGAAGGGTGGTTCCCGTACAACCTACACCCAGGCTACACATAATGCCCGGCTTGTGGGAGCTGAAGTGGCACTGCTGGTTAACGTTTTGCAGgtgcatgatcagttcaggattatgttgatttcatgttgatttccaagtgt Alignment from Exonerate_protein2genome AACATGTTCCGAGTGGAGAGTGTGAACTGCATCTGTGTGGACTGGAAAGGCGGTTCCCGAACGACATATACCCAGGCTACCCAGAACGTCCGGGTCGTGGGGGCAGAAGTGGCATTGTTGGTTAACGTTCTGCAG tcagcttctgaggctcaatacaattgccctctctacgttcccactttcagAATATGTTCCATGTGGAAAGTGTGAATTGCATCTGTGCGGACTGGAAGGGTGGTTCCCGTACAACCTACACCCAGGCTACACATAATGCCCGGCTTGTGGGAGCTGAAGTGGCACTGCTGGTTAACGTTTTGCAGgtgcatgatcagttcaggattatgttgatttcatgttgatttccaagtgt Alignment from Exonerate_coding2genome AACATGTTCCGAGTGGAGAGTGTGAACTGCATCTGTGTGGACTGGAAAGGCGGTTCCCGAACGACATATACCCAGGCTACCCAGAACGTCCGGGTCGTGGGGGCAGAAGTGGCATTGTTGGTTAACGTTCTGCAG tcagcttctgaggctcaatacaattgccctctctacgttcccactttcagAATATGTTCCATGTGGAAAGTGTGAATTGCATCTGTGCGGACTGGAAGGGTGGTTCCCGTACAACCTACACCCAGGCTACACATAATGCCCGGCTTGTGGGAGCTGAAGTGGCACTGCTGGTTAACGTTTTGCAGgtgcatgatcagttcaggattatgttgatttcatgttgatttccaagtgt Alignment from GeneWise AACATGTTCCGAGTGGAGAGTGTGAACTGCATCTGTGTGGACTGGAAAGGCGGTTCCCGAACGACATATACCCAGGCTACCCAGAACGTCCGGGTCGTGGGGGCAGAAGTGGCATTGTTGGTTAACGTTCTGCAG tcagcttctgaggctcaatacaattgccctctctacgttcccactttcagAATATGTTCCATGTGGAAAGTGTGAATTGCATCTGTGCGGACTGGAAGGGTGGTTCCCGTACAACCTACACCCAGGCTACACATAATGCCCGGCTTGTGGGAGCTGAAGTGGCACTGCTGGTTAACGTTTTGCAGgtgcatgatcagttcaggattatgttgatttcatgttgatttccaagtgt #### Pnlip_ID12752_11 --> 1 - 2 Original Alignment gGGCTCTCTGCAGCCAGGTACTTCTCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAgt ctccagggactaaataaatggctcaagtgaaatactgtttgttcttgtagg------------------------GATGGCAATGAATTTGAGTCCGAA------GTTGGAGATTTGCAGAGGGTCAAATTTATTGGC---AACAATGTAATTAACCCAACACTTCCGAGAGTGGGGGCATCAGGGATTACTGTAGAAAGAAATGATGGGAGAgtgtaaggtactcgtgtaccaaaagacagcagggcatagcttaaattcacat Alignment from CESAR gGGCTCTCTGCAGCCAGGTACTTCTCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAgt ctccagggactaaataaatggctcaagtgaaatactgtttgttcttgtaggGAT------------------------GGCAATGAATTTGAGTCC------GAAGTTGGAGATTTGCAGAGGGTCAAATTTATT---GGCAACAATGTAATTAACCCAACACTTCCGAGAGTGGGGGCATCAGGGATTACTGTAGAAAGAAATGATGGGAGAgtgtaaggtactcgtgtaccaaaagacagcagggcatagcttaaattcacat Alignment from Spaln_aa2Genome TCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAGT ctccagggactaaataaatggctcaagtgaaatactgtttgttcttgtagGGATGGCAATGAATTTGAGTCC------GAAGTTGGAGATTTGCAGAGGGTCAAATTTATTGGC---AACAATGTAATTAACCCAACACTTCCGAGAGTGGGGGCATCAGGGATTACTGTAGAAAGAAATGATGGGAGAGTgtaaggtactcgtgtaccaaaagacagcagggcatagcttaaattcacat Alignment from Spaln_nt2Genome TCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAGT ctccagggactaaataaatggctcaagtgaaatactgtttgttcttgtagGGATGGCAATGAATTTGAGTC------CGAAGTTGGAGATTTGCAGAGGGTCAAATTTATTGG---CAACAATGTAATTAACCCAACACTTCCGAGAGTGGGGGCATCAGGGATTACTGTAGAAAGAAATGATGGGAGAGTgtaaggtactcgtgtaccaaaagacagcagggcatagcttaaattcacat Alignment from Pairagon GGGCTCTCTGCAGCCAGGTACTTCTCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAGT ctccagggactaaataaatggctcaagtgaaatactgtttgttcttgtagGG------------------------ATGGCAATGAATTTGAGTCC------GAAGTTGGAGATTTGCAGAGGGTCAAATTTATTGG---CAACAATGTAATTAACCCAACACTTCCGAGAGTGGGGGCATCAGGGATTACTGTAGAAAGAAATGATGGGAGAGTgtaaggtactcgtgtaccaaaagacagcagggcatagcttaaattcacat Alignment from Exonerate_protein2genome ATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAGT ctccagggactaaataaatggctcaagtgaaatactgtttgttcttgtagggATGGCAATGAATTTGAGTCCGAAGTTGGAGATTTGCAGAGGGTCAAATTTATTGGC---AACAATGTAATTAACCCAACACTTCCGAGAGTGGGGGCATCAGGGATTACTGTAGAAAGAAATGATGGGAGAGTgtaaggtactcgtgtaccaaaagacagcagggcatagcttaaattcacat Alignment from Exonerate_coding2genome ATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAGT ctccagggactaaataaatggctcaagtgaaatactgtttgttcttgtagggATGGCAATGAATTTGAGTCCGAAGTTGGAGATTTGCAGAGGGTCAAATTTATTGGC---AACAATGTAATTAACCCAACACTTCCGAGAGTGGGGGCATCAGGGATTACTGTAGAAAGAAATGATGGGAGAGTgtaaggtactcgtgtaccaaaagacagcagggcatagcttaaattcacat Alignment from GeneWise -AAGGGCTCTCTGCAGCCAGGTACTTCTCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAGTG ctccagggactaaataaatggctcaagtgaaatactgtttgttcttgtagGGATGGC---------------------------AATGAATTTGAGTCCGAAGTT------GGAGATTTGCAGAGGGTCAAATTTATTGGC---AACAATGTAATTAACCCAACACTTCCGAGAGTGGGGGCATCAGGGATTACTGTAGAAAGAAATGATGGGAGAGTGtaaggtactcgtgtaccaaaagacagcagggcatagcttaaattcacat #### Pnliprp1_ID12765_2 --> 2 - 0 Original Alignment ggAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgaccatggaccggcagtttcccatttcctttgaatcagggAAAGAATTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCGGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTCCTCCCTTGGAGTCCAGAGAAGATCAACACCTGCTTCTTGCTCTACACAAATGAGAACCCCATTGCTTTCCAGgtatgtactgtaggtcctagccgagagccaggtgatcctaccgctttaac Alignment from CESAR ggAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgaccatggaccggcagtttcccatttcctttgaatcagggAAAGAATTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCGGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTCCTCCCTTGGAGTCCAGAGAAGATCAACACCTGCTTCTTGCTCTACACAAATGAGAACCCCATTGCTTTCCAGgtatgtactgtaggtcctagccgagagccaggtgatcctaccgctttaac Alignment from Spaln_aa2Genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgaccatggaccggcagtttcccatttcctttgaatcagGGAAAGAATTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCGGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTCCTCCCTTGGAGTCCAGAGAAGATCAACACCTGCTTCTTGCTCTACACAAATGAGAACCCCATTGCTTTCCAGgtatgtactgtaggtcctagccgagagccaggtgatcctaccgctttaac Alignment from Spaln_nt2Genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgaccatggaccggcagtttcccatttcctttgaatcagGGAAAGAATTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCGGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTCCTCCCTTGGAGTCCAGAGAAGATCAACACCTGCTTCTTGCTCTACACAAATGAGAACCCCATTGCTTTCCAGgtatgtactgtaggtcctagccgagagccaggtgatcctaccgctttaac Alignment from Pairagon GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgaccatggaccggcagtttcccatttcctttgaatcagGGAAAGAATTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCGGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTCCTCCCTTGGAGTCCAGAGAAGATCAACACCTGCTTCTTGCTCTACACAAATGAGAACCCCATTGCTTTCCAGgtatgtactgtaggtcctagccgagagccaggtgatcctaccgctttaac Alignment from Exonerate_protein2genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgaccatggaccggcagtttcccatttcctttgaatcagGGAAAGAATTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCGGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTCCTCCCTTGGAGTCCAGAGAAGATCAACACCTGCTTCTTGCTCTACACAAATGAGAACCCCATTGCTTTCCAGgtatgtactgtaggtcctagccgagagccaggtgatcctaccgctttaac Alignment from Exonerate_coding2genome TTCCTACTGGGAGCAGCTCAGGGGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgaccatggaccggcagTTTCCCATTTCCTTTGAATCAGGGAAAGAATTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCGGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTCCTCCCTTGGAGTCCAGAGAAGATCAACACCTGCTTCTTGCTCTACACAAATGAGAACCCCATTGCTTTCCAGgtatgtactgtaggtcctagccgagagccaggtgatcctaccgctttaac Alignment from GeneWise GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgaccatggaccggcagtttcccatttcctttgaatcagGGAAAGAATTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCGGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTCCTCCCTTGGAGTCCAGAGAAGATCAACACCTGCTTCTTGCTCTACACAAATGAGAACCCCATTGCTTTCCAGgtatgtactgtaggtcctagccgagagccaggtgatcctaccgctttaac #### Pnliprp1_ID12771_8 --> 2 - 0 Original Alignment gaACCCGGGACTTTGTGGCTTGTAACCACCTGAGAAGCTACAAGTACTACTTAGAGAGCATCCTTAACCCAGATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCT ccacagcctgacatgaattagccacttgttgagctgttctcctcctgcagggACACGGGACTTTGTGGCCTGTAACCACCTGAGAAGCTACAAGTACTATTTGGAGAGCATCCTTAACCCAGATGATTTTGCGGCATATCCCTGTGCCTCCTACCGGGACTTTGAATCTgtaagaatttactttaggtaaaattgaggaaacctgcacttggacatttc Alignment from CESAR gaACCCGGGACTTTGTGGCTTGTAACCACCTGAGAAGCTACAAGTACTACTTAGAGAGCATCCTTAACCCAGATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCT ccacagcctgacatgaattagccacttgttgagctgttctcctcctgcagggACACGGGACTTTGTGGCCTGTAACCACCTGAGAAGCTACAAGTACTATTTGGAGAGCATCCTTAACCCAGATGATTTTGCGGCATATCCCTGTGCCTCCTACCGGGACTTTGAATCTgtaagaatttactttaggtaaaattgaggaaacctgcacttggacatttc Alignment from Spaln_aa2Genome GAACCCGGGACTTTGTGGCTTGTAACCACCTGAGAAGCTACAAGTACTACTTAGAGAGCATCCTTAACCCAGATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCT ccacagcctgacatgaattagccacttgttgagctgttctcctcctgcagGGACACGGGACTTTGTGGCCTGTAACCACCTGAGAAGCTACAAGTACTATTTGGAGAGCATCCTTAACCCAGATGATTTTGCGGCATATCCCTGTGCCTCCTACCGGGACTTTGAATCTgtaagaatttactttaggtaaaattgaggaaacctgcacttggacatttc Alignment from Spaln_nt2Genome GAACCCGGGACTTTGTGGCTTGTAACCACCTGAGAAGCTACAAGTACTACTTAGAGAGCATCCTTAACCCAGATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCT ccacagcctgacatgaattagccacttgttgagctgttctcctcctgcagGGACACGGGACTTTGTGGCCTGTAACCACCTGAGAAGCTACAAGTACTATTTGGAGAGCATCCTTAACCCAGATGATTTTGCGGCATATCCCTGTGCCTCCTACCGGGACTTTGAATCTgtaagaatttactttaggtaaaattgaggaaacctgcacttggacatttc Alignment from Pairagon GAACCCGGGACTTTGTGGCTTGTAACCACCTGAGAAGCTACAAGTACTACTTAGAGAGCATCCTTAACCCAGATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCT ccacagcctgacatgaattagccacttgttgagctgttctcctcctgcagGGACACGGGACTTTGTGGCCTGTAACCACCTGAGAAGCTACAAGTACTATTTGGAGAGCATCCTTAACCCAGATGATTTTGCGGCATATCCCTGTGCCTCCTACCGGGACTTTGAATCTgtaagaatttactttaggtaaaattgaggaaacctgcacttggacatttc Alignment from Exonerate_protein2genome GAACCCGGGACTTTGTGGCTTGTAACCACCTGAGAAGCTACAAGTACTACTTAGAGAGCATCCTTAACCCAGATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCT ccacagcctgacatgaattagccacttgttgagctgttctcctcctgcagGGACACGGGACTTTGTGGCCTGTAACCACCTGAGAAGCTACAAGTACTATTTGGAGAGCATCCTTAACCCAGATGATTTTGCGGCATATCCCTGTGCCTCCTACCGGGACTTTGAATCTgtaagaatttactttaggtaaaattgaggaaacctgcacttggacatttc Alignment from Exonerate_coding2genome GAACCCGGGACTTTGTGGCTTGTAACCACCTGAGAAGCTACAAGTACTACTTAGAGAGCATCCTTAACCCAGATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCT ccacagcctgacatgaattagccacttgttgagctgttctcctcctgcagGGACACGGGACTTTGTGGCCTGTAACCACCTGAGAAGCTACAAGTACTATTTGGAGAGCATCCTTAACCCAGATGATTTTGCGGCATATCCCTGTGCCTCCTACCGGGACTTTGAATCTgtaagaatttactttaggtaaaattgaggaaacctgcacttggacatttc Alignment from GeneWise GAACCCGGGACTTTGTGGCTTGTAACCACCTGAGAAGCTACAAGTACTACTTAGAGAGCATCCTTAACCCAGATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCT ccacagcctgacatgaattagccacttgttgagctgttctcctcctgcagGGACACGGGACTTTGTGGCCTGTAACCACCTGAGAAGCTACAAGTACTATTTGGAGAGCATCCTTAACCCAGATGATTTTGCGGCATATCCCTGTGCCTCCTACCGGGACTTTGAATCTgtaagaatttactttaggtaaaattgaggaaacctgcacttggacatttc #### Pnliprp2_ID12780_3 --> 0 - 0 Original Alignment ATAATCTCTGCCACCGACCCAGCCACCATCAATGCTTCCAACTTCCAACTGGACCGCAAGACACGTTTCATTATCCATGGATTCATAGACAAGGGAGAAGAAGGCTGGTTGCTGGACATGTGCAAG gtacagggcaactcaatcagatcgacagatgatattaattttctttccagATAATTTCTGCCACAGACCCAGCAACTGTCAATACTTCTAACTTTCAACTGGACCATAAGACACGTTTCATTATACATGGATTCATAGGCAAGGGTGAGGAGGGCTGGTTACTGGAAATGTGTAAAgtaggaatttggaataagcatctgtccctagctccttgaaagcatcaact Alignment from CESAR ATAATCTCTGCCACCGACCCAGCCACCATCAATGCTTCCAACTTCCAACTGGACCGCAAGACACGTTTCATTATCCATGGATTCATAGACAAGGGAGAAGAAGGCTGGTTGCTGGACATGTGCAAG gtacagggcaactcaatcagatcgacagatgatattaattttctttccagATAATTTCTGCCACAGACCCAGCAACTGTCAATACTTCTAACTTTCAACTGGACCATAAGACACGTTTCATTATACATGGATTCATAGGCAAGGGTGAGGAGGGCTGGTTACTGGAAATGTGTAAAgtaggaatttggaataagcatctgtccctagctccttgaaagcatcaact Alignment from Spaln_aa2Genome ATAATCTCTGCCACCGACCCAGCCACCATCAATGCTTCCAACTTCCAACTGGACCGCAAGACACGTTTCATTATCCATGGATTCATAGACAAGGGAGAAGAAGGCTGGTTGCTGGACATGTGCAAG gtacagggcaactcaatcagatcgacagatgatattaattttctttccagATAATTTCTGCCACAGACCCAGCAACTGTCAATACTTCTAACTTTCAACTGGACCATAAGACACGTTTCATTATACATGGATTCATAGGCAAGGGTGAGGAGGGCTGGTTACTGGAAATGTGTAAAgtaggaatttggaataagcatctgtccctagctccttgaaagcatcaact Alignment from Spaln_nt2Genome ATAATCTCTGCCACCGACCCAGCCACCATCAATGCTTCCAACTTCCAACTGGACCGCAAGACACGTTTCATTATCCATGGATTCATAGACAAGGGAGAAGAAGGCTGGTTGCTGGACATGTGCAAG gtacagggcaactcaatcagatcgacagatgatattaattttctttccagATAATTTCTGCCACAGACCCAGCAACTGTCAATACTTCTAACTTTCAACTGGACCATAAGACACGTTTCATTATACATGGATTCATAGGCAAGGGTGAGGAGGGCTGGTTACTGGAAATGTGTAAAgtaggaatttggaataagcatctgtccctagctccttgaaagcatcaact Alignment from Pairagon ATAATCTCTGCCACCGACCCAGCCACCATCAATGCTTCCAACTTCCAACTGGACCGCAAGACACGTTTCATTATCCATGGATTCATAGACAAGGGAGAAGAAGGCTGGTTGCTGGACATGTGCAAG gtacagggcaactcaatcagatcgacagatgatattaattttctttccagATAATTTCTGCCACAGACCCAGCAACTGTCAATACTTCTAACTTTCAACTGGACCATAAGACACGTTTCATTATACATGGATTCATAGGCAAGGGTGAGGAGGGCTGGTTACTGGAAATGTGTAAAgtaggaatttggaataagcatctgtccctagctccttgaaagcatcaact Alignment from Exonerate_protein2genome ATAATCTCTGCCACCGACCCAGCCACCATCAATGCTTCCAACTTCCAACTGGACCGCAAGACACGTTTCATTATCCATGGATTCATAGACAAGGGAGAAGAAGGCTGGTTGCTGGACATGTGCAAG gtacagggcaactcaatcagatcgacagatgatattaattttctttccagATAATTTCTGCCACAGACCCAGCAACTGTCAATACTTCTAACTTTCAACTGGACCATAAGACACGTTTCATTATACATGGATTCATAGGCAAGGGTGAGGAGGGCTGGTTACTGGAAATGTGTAAAgtaggaatttggaataagcatctgtccctagctccttgaaagcatcaact Alignment from Exonerate_coding2genome ATAATCTCTGCCACCGACCCAGCCACCATCAATGCTTCCAACTTCCAACTGGACCGCAAGACACGTTTCATTATCCATGGATTCATAGACAAGGGAGAAGAAGGCTGGTTGCTGGACATGTGCAAG gtacagggcaactcaatcagatcgacagatgatattaattttctttccagATAATTTCTGCCACAGACCCAGCAACTGTCAATACTTCTAACTTTCAACTGGACCATAAGACACGTTTCATTATACATGGATTCATAGGCAAGGGTGAGGAGGGCTGGTTACTGGAAATGTGTAAAgtaggaatttggaataagcatctgtccctagctccttgaaagcatcaact Alignment from GeneWise ATAATCTCTGCCACCGACCCAGCCACCATCAATGCTTCCAACTTCCAACTGGACCGCAAGACACGTTTCATTATCCATGGATTCATAGACAAGGGAGAAGAAGGCTGGTTGCTGGACATGTGCAAG gtacagggcaactcaatcagatcgacagatgatattaattttctttccagATAATTTCTGCCACAGACCCAGCAACTGTCAATACTTCTAACTTTCAACTGGACCATAAGACACGTTTCATTATACATGGATTCATAGGCAAGGGTGAGGAGGGCTGGTTACTGGAAATGTGTAAAgtaggaatttggaataagcatctgtccctagctccttgaaagcatcaact #### Pnliprp2_ID12783_6 --> 2 - 1 Original Alignment ggCTGGACCCTGCAGAGCCCTGTTTCCAAGGCCTGCCCGAGGAAGTTCGGTTGGACCCATCGGATGCCATGTTTGTAGACGTGATCCACACTGACAGTGCCCCCATAATCCCCTATCTAg ttgagaatgagtcctcatcctttgttgctggcaagctctctcacttgcaggtTTAGACCCTACAGAACCCCGCTTCCAAGGTCTTCCTGAGGAGATCCAGTTAGATCCATCAGATGGCATGTTTGTAGATGTTATCCACACTGACAGTGATACTATAATTCCTTATCTGggtaggttctacccttataactagcattatgttctcatgagtgcctttcgg Alignment from CESAR ggCTGGACCCTGCAGAGCCCTGTTTCCAAGGCCTGCCCGAGGAAGTTCGGTTGGACCCATCGGATGCCATGTTTGTAGACGTGATCCACACTGACAGTGCCCCCATAATCCCCTATCTAg ttgagaatgagtcctcatcctttgttgctggcaagctctctcacttgcaggtTTAGACCCTACAGAACCCCGCTTCCAAGGTCTTCCTGAGGAGATCCAGTTAGATCCATCAGATGGCATGTTTGTAGATGTTATCCACACTGACAGTGATACTATAATTCCTTATCTGggtaggttctacccttataactagcattatgttctcatgagtgcctttcgg Alignment from Spaln_aa2Genome GGCTGGACCCTGCAGAGCCCTGTTTCCAAGGCCTGCCCGAGGAAGTTCGGTTGGACCCATCGGATGCCATGTTTGTAGACGTGATCCACACTGACAGTGCCCCCATAATCCCCTATCTAG ttgagaatgagtcctcatcctttgttgctggcaagctctctcacttgcagGTTTAGACCCTACAGAACCCCGCTTCCAAGGTCTTCCTGAGGAGATCCAGTTAGATCCATCAGATGGCATGTTTGTAGATGTTATCCACACTGACAGTGATACTATAATTCCTTATCTGGgtaggttctacccttataactagcattatgttctcatgagtgcctttcgg Alignment from Spaln_nt2Genome GGCTGGACCCTGCAGAGCCCTGTTTCCAAGGCCTGCCCGAGGAAGTTCGGTTGGACCCATCGGATGCCATGTTTGTAGACGTGATCCACACTGACAGTGCCCCCATAATCCCCTATCTAG ttgagaatgagtcctcatcctttgttgctggcaagctctctcacttgcagGTTTAGACCCTACAGAACCCCGCTTCCAAGGTCTTCCTGAGGAGATCCAGTTAGATCCATCAGATGGCATGTTTGTAGATGTTATCCACACTGACAGTGATACTATAATTCCTTATCTGGgtaggttctacccttataactagcattatgttctcatgagtgcctttcgg Alignment from Pairagon GGCTGGACCCTGCAGAGCCCTGTTTCCAAGGCCTGCCCGAGGAAGTTCGGTTGGACCCATCGGATGCCATGTTTGTAGACGTGATCCACACTGACAGTGCCCCCATAATCCCCTATCTAG ttgagaatgagtcctcatcctttgttgctggcaagctctctcacttgcagGTTTAGACCCTACAGAACCCCGCTTCCAAGGTCTTCCTGAGGAGATCCAGTTAGATCCATCAGATGGCATGTTTGTAGATGTTATCCACACTGACAGTGATACTATAATTCCTTATCTGGgtaggttctacccttataactagcattatgttctcatgagtgcctttcgg Alignment from Exonerate_protein2genome GGCTGGACCCTGCAGAGCCCTGTTTCCAAGGCCTGCCCGAGGAAGTTCGGTTGGACCCATCGGATGCCATGTTTGTAGACGTGATCCACACTGACAGTGCCCCCATAATCCCCTATCTAG ttgagaatgagtcctcatcctttgttgctggcaagctctctcacttgcagGTTTAGACCCTACAGAACCCCGCTTCCAAGGTCTTCCTGAGGAGATCCAGTTAGATCCATCAGATGGCATGTTTGTAGATGTTATCCACACTGACAGTGATACTATAATTCCTTATCTGGgtaggttctacccttataactagcattatgttctcatgagtgcctttcgg Alignment from Exonerate_coding2genome GGCTGGACCCTGCAGAGCCCTGTTTCCAAGGCCTGCCCGAGGAAGTTCGGTTGGACCCATCGGATGCCATGTTTGTAGACGTGATCCACACTGACAGTGCCCCCATAATCCCCTATCTAG ttgagaatgagtcctcatcctttgttgctggcaagctctctcacttgcagGTTTAGACCCTACAGAACCCCGCTTCCAAGGTCTTCCTGAGGAGATCCAGTTAGATCCATCAGATGGCATGTTTGTAGATGTTATCCACACTGACAGTGATACTATAATTCCTTATCTGGgtaggttctacccttataactagcattatgttctcatgagtgcctttcgg Alignment from GeneWise GGCTGGACCCTGCAGAGCCCTGTTTCCAAGGCCTGCCCGAGGAAGTTCGGTTGGACCCATCGGATGCCATGTTTGTAGACGTGATCCACACTGACAGTGCCCCCATAATCCCCTATCTAG ttgagaatgagtcctcatcctttgttgctggcaagctctctcacttgcagGTTTAGACCCTACAGAACCCCGCTTCCAAGGTCTTCCTGAGGAGATCCAGTTAGATCCATCAGATGGCATGTTTGTAGATGTTATCCACACTGACAGTGATACTATAATTCCTTATCTGGgtaggttctacccttataactagcattatgttctcatgagtgcctttcgg #### Pnliprp2_ID12787_9 --> 0 - 1 Original Alignment AATGACTGCTTCCCTTGTCCAGAACAAGGGTGTCCCAAAATGGGGCACTATGCTGATCAATTTGAGGGGAAAACTGCTACTGTGGAACAAACCTTTTTCCTGAATACAGGAGACAGTGGTAACTTTACTc tggaactggaataagtggccgcccgctaatttgactttatacttgtttagAATGACTGCTTCCCTTGCCCAGAGCATGGATGCCCCAATATGGGTCACTTTGCTGATCAGTTTGAGGGAAGAATTGCTACTGTGGAACAAGCCTTTTTCCTAAACACGGGGGATAGCAGCAACTTCACCcgtaagggtccattttttgtttgttgcttagtagcattggtgtcagcatat Alignment from CESAR AATGACTGCTTCCCTTGTCCAGAACAAGGGTGTCCCAAAATGGGGCACTATGCTGATCAATTTGAGGGGAAAACTGCTACTGTGGAACAAACCTTTTTCCTGAATACAGGAGACAGTGGTAACTTTACTc tggaactggaataagtggccgcccgctaatttgactttatacttgtttagAATGACTGCTTCCCTTGCCCAGAGCATGGATGCCCCAATATGGGTCACTTTGCTGATCAGTTTGAGGGAAGAATTGCTACTGTGGAACAAGCCTTTTTCCTAAACACGGGGGATAGCAGCAACTTCACCcgtaagggtccattttttgtttgttgcttagtagcattggtgtcagcatat Alignment from Spaln_aa2Genome AATGACTGCTTCCCTTGTCCAGAACAAGGGTGTCCCAAAATGGGGCACTATGCTGATCAATTTGAGGGGAAAACTGCTACTGTGGAACAAACCTTTTTCCTGAATACAGGAGACAGTGGTAACTTTACTC tggaactggaataagtggccgcccgctaatttgactttatacttgtttagAATGACTGCTTCCCTTGCCCAGAGCATGGATGCCCCAATATGGGTCACTTTGCTGATCAGTTTGAGGGAAGAATTGCTACTGTGGAACAAGCCTTTTTCCTAAACACGGGGGATAGCAGCAACTTCACCCgtaagggtccattttttgtttgttgcttagtagcattggtgtcagcatat Alignment from Spaln_nt2Genome AATGACTGCTTCCCTTGTCCAGAACAAGGGTGTCCCAAAATGGGGCACTATGCTGATCAATTTGAGGGGAAAACTGCTACTGTGGAACAAACCTTTTTCCTGAATACAGGAGACAGTGGTAACTTTACTC tggaactggaataagtggccgcccgctaatttgactttatacttgtttagAATGACTGCTTCCCTTGCCCAGAGCATGGATGCCCCAATATGGGTCACTTTGCTGATCAGTTTGAGGGAAGAATTGCTACTGTGGAACAAGCCTTTTTCCTAAACACGGGGGATAGCAGCAACTTCACCCgtaagggtccattttttgtttgttgcttagtagcattggtgtcagcatat Alignment from Pairagon AATGACTGCTTCCCTTGTCCAGAACAAGGGTGTCCCAAAATGGGGCACTATGCTGATCAATTTGAGGGGAAAACTGCTACTGTGGAACAAACCTTTTTCCTGAATACAGGAGACAGTGGTAACTTTACTC tggaactggaataagtggccgcccgctaatttgactttatacttgtttagAATGACTGCTTCCCTTGCCCAGAGCATGGATGCCCCAATATGGGTCACTTTGCTGATCAGTTTGAGGGAAGAATTGCTACTGTGGAACAAGCCTTTTTCCTAAACACGGGGGATAGCAGCAACTTCACCCgtaagggtccattttttgtttgttgcttagtagcattggtgtcagcatat Alignment from Exonerate_protein2genome AATGACTGCTTCCCTTGTCCAGAACAAGGGTGTCCCAAAATGGGGCACTATGCTGATCAATTTGAGGGGAAAACTGCTACTGTGGAACAAACCTTTTTCCTGAATACAGGAGACAGTGGTAACTTTACTC tggaactggaataagtggccgcccgctaatttgactttatacttgtttagAATGACTGCTTCCCTTGCCCAGAGCATGGATGCCCCAATATGGGTCACTTTGCTGATCAGTTTGAGGGAAGAATTGCTACTGTGGAACAAGCCTTTTTCCTAAACACGGGGGATAGCAGCAACTTCACCCgtaagggtccattttttgtttgttgcttagtagcattggtgtcagcatat Alignment from Exonerate_coding2genome AATGACTGCTTCCCTTGTCCAGAACAAGGGTGTCCCAAAATGGGGCACTATGCTGATCAATTTGAGGGGAAAACTGCTACTGTGGAACAAACCTTTTTCCTGAATACAGGAGACAGTGGTAACTTTACTCGT tggaactggaataagtggccgcccgctaatttgactttatacttgtttagAATGACTGCTTCCCTTGCCCAGAGCATGGATGCCCCAATATGGGTCACTTTGCTGATCAGTTTGAGGGAAGAATTGCTACTGTGGAACAAGCCTTTTTCCTAAACACGGGGGATAGCAGCAACTTCACCCGTaagggtccattttttgtttgttgcttagtagcattggtgtcagcatat Alignment from GeneWise AATGACTGCTTCCCTTGTCCAGAACAAGGGTGTCCCAAAATGGGGCACTATGCTGATCAATTTGAGGGGAAAACTGCTACTGTGGAACAAACCTTTTTCCTGAATACAGGAGACAGTGGTAACTTTACTC tggaactggaataagtggccgcccgctaatttgactttatacttgtttagAATGACTGCTTCCCTTGCCCAGAGCATGGATGCCCCAATATGGGTCACTTTGCTGATCAGTTTGAGGGAAGAATTGCTACTGTGGAACAAGCCTTTTTCCTAAACACGGGGGATAGCAGCAACTTCACCCgtaagggtccattttttgtttgttgcttagtagcattggtgtcagcatat #### Pola2_ID1331_10 --> 0 - 1 Original Alignment GGCGTGCCACTTCCGTTCTATCAGCCTACTGAAGAGGAGGGAg aagtgacagtaagtattgtacatataggttgcttgaatctccacttccagGGTGTACCAGTACCATTCTATCAGCCAACTGAAGAGAAGGGGggtatgtgtggtttcaaattcctcctttgtgtctatgaagtcagtatacaa Alignment from CESAR GGCGTGCCACTTCCGTTCTATCAGCCTACTGAAGAGGAGGGAg aagtgacagtaagtattgtacatataggttgcttgaatctccacttccagGGTGTACCAGTACCATTCTATCAGCCAACTGAAGAGAAGGGGggtatgtgtggtttcaaattcctcctttgtgtctatgaagtcagtatacaa Alignment from Spaln_aa2Genome GGCGTGCCACTTCCGTTCTATCAGCCTACTGAAGAGGAGGGAG aagtgacagtaagtattgtacatataggttgcttgaatctccacttccagGGTGTACCAGTACCATTCTATCAGCCAACTGAAGAGAAGGGGGgtatgtgtggtttcaaattcctcctttgtgtctatgaagtcagtatacaa Alignment from Spaln_nt2Genome GGCGTGCCACTTCCGTTCTATCAGCCTACTGAAGAGGAGGGAG aagtgacagtaagtattgtacatataggttgcttgaatctccacttccagGGTGTACCAGTACCATTCTATCAGCCAACTGAAGAGAAGGGGGgtatgtgtggtttcaaattcctcctttgtgtctatgaagtcagtatacaa Alignment from Pairagon GGCGTGCCACTTCCGTTCTATCAGCCTACTGAAGAGGAGGGAG aagtgacagtaagtattgtacatataggttgcttgaatctccacttccagGGTGTACCAGTACCATTCTATCAGCCAACTGAAGAGAAGGGGGgtatgtgtggtttcaaattcctcctttgtgtctatgaagtcagtatacaa Alignment from Exonerate_protein2genome GGCGTGCCACTTCCGTTCTATCAGCCTACTGAAGAGGAGGGAG aagtgacagtaagtattgtacatataggttgcttgaatctccacttccagGGTGTACCAGTACCATTCTATCAGCCAACTGAAGAGAAGGGGGgtatgtgtggtttcaaattcctcctttgtgtctatgaagtcagtatacaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGCGTGCCACTTCCGTTCTATCAGCCTACTGAAGAGGAGGGAG aagtgacagtaagtattgtacatataggttgcttgaatctccacttccagGGTGTACCAGTACCATTCTATCAGCCAACTGAAGAGAAGGGGGgtatgtgtggtttcaaattcctcctttgtgtctatgaagtcagtatacaa #### Pola2_ID1333_8 --> 0 - 0 Original Alignment GAGCCTGTTATTCTCCTGGGTCAGATTGGCTGCGACAGCAACGGGAAGCTGAACAGCAAGTCCGTGATTCTCGAGGGGGACCAGGAGCACTCCTATGGCGCGCAGATCCCAGTGGACCTATCGGAACTCAAAGAGTATTCCCTCTTCCCTGGACAG atccttaatataacttatgcttcacaattgtattttccactttcacccagGAGCCTGTTATCCTCCTGGGTCAGATTGGCTCTGATGGCAACAGGAAGCTGAACAGCAAGTCTGTTATTCTTGAGGGAGACCAAGAGCACTCTTATGGTGCACAAATCCCAGCAGACCTCTTAGACCTGAAAAAGTATTCACTTTTCCCTGGGGAGgtaagctgatgaccttctgtcattggattgatgccttaaggcaagtcaga Alignment from CESAR GAGCCTGTTATTCTCCTGGGTCAGATTGGCTGCGACAGCAACGGGAAGCTGAACAGCAAGTCCGTGATTCTCGAGGGGGACCAGGAGCACTCCTATGGCGCGCAGATCCCAGTGGACCTATCGGAACTCAAAGAGTATTCCCTCTTCCCTGGACAG atccttaatataacttatgcttcacaattgtattttccactttcacccagGAGCCTGTTATCCTCCTGGGTCAGATTGGCTCTGATGGCAACAGGAAGCTGAACAGCAAGTCTGTTATTCTTGAGGGAGACCAAGAGCACTCTTATGGTGCACAAATCCCAGCAGACCTCTTAGACCTGAAAAAGTATTCACTTTTCCCTGGGGAGgtaagctgatgaccttctgtcattggattgatgccttaaggcaagtcaga Alignment from Spaln_aa2Genome GAGCCTGTTATTCTCCTGGGTCAGATTGGCTGCGACAGCAACGGGAAGCTGAACAGCAAGTCCGTGATTCTCGAGGGGGACCAGGAGCACTCCTATGGCGCGCAGATCCCAGTGGACCTATCGGAACTCAAAGAGTATTCCCTCTTCCCTGGACAG atccttaatataacttatgcttcacaattgtattttccactttcacccagGAGCCTGTTATCCTCCTGGGTCAGATTGGCTCTGATGGCAACAGGAAGCTGAACAGCAAGTCTGTTATTCTTGAGGGAGACCAAGAGCACTCTTATGGTGCACAAATCCCAGCAGACCTCTTAGACCTGAAAAAGTATTCACTTTTCCCTGGGGAGgtaagctgatgaccttctgtcattggattgatgccttaaggcaagtcaga Alignment from Spaln_nt2Genome GAGCCTGTTATTCTCCTGGGTCAGATTGGCTGCGACAGCAACGGGAAGCTGAACAGCAAGTCCGTGATTCTCGAGGGGGACCAGGAGCACTCCTATGGCGCGCAGATCCCAGTGGACCTATCGGAACTCAAAGAGTATTCCCTCTTCCCTGGACAG atccttaatataacttatgcttcacaattgtattttccactttcacccagGAGCCTGTTATCCTCCTGGGTCAGATTGGCTCTGATGGCAACAGGAAGCTGAACAGCAAGTCTGTTATTCTTGAGGGAGACCAAGAGCACTCTTATGGTGCACAAATCCCAGCAGACCTCTTAGACCTGAAAAAGTATTCACTTTTCCCTGGGGAGgtaagctgatgaccttctgtcattggattgatgccttaaggcaagtcaga Alignment from Pairagon GAGCCTGTTATTCTCCTGGGTCAGATTGGCTGCGACAGCAACGGGAAGCTGAACAGCAAGTCCGTGATTCTCGAGGGGGACCAGGAGCACTCCTATGGCGCGCAGATCCCAGTGGACCTATCGGAACTCAAAGAGTATTCCCTCTTCCCTGGACAG atccttaatataacttatgcttcacaattgtattttccactttcacccagGAGCCTGTTATCCTCCTGGGTCAGATTGGCTCTGATGGCAACAGGAAGCTGAACAGCAAGTCTGTTATTCTTGAGGGAGACCAAGAGCACTCTTATGGTGCACAAATCCCAGCAGACCTCTTAGACCTGAAAAAGTATTCACTTTTCCCTGGGGAGgtaagctgatgaccttctgtcattggattgatgccttaaggcaagtcaga Alignment from Exonerate_protein2genome GAGCCTGTTATTCTCCTGGGTCAGATTGGCTGCGACAGCAACGGGAAGCTGAACAGCAAGTCCGTGATTCTCGAGGGGGACCAGGAGCACTCCTATGGCGCGCAGATCCCAGTGGACCTATCGGAACTCAAAGAGTATTCCCTCTTCCCTGGACAG atccttaatataacttatgcttcacaattgtattttccactttcacccagGAGCCTGTTATCCTCCTGGGTCAGATTGGCTCTGATGGCAACAGGAAGCTGAACAGCAAGTCTGTTATTCTTGAGGGAGACCAAGAGCACTCTTATGGTGCACAAATCCCAGCAGACCTCTTAGACCTGAAAAAGTATTCACTTTTCCCTGGGGAGgtaagctgatgaccttctgtcattggattgatgccttaaggcaagtcaga Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAGCCTGTTATTCTCCTGGGTCAGATTGGCTGCGACAGCAACGGGAAGCTGAACAGCAAGTCCGTGATTCTCGAGGGGGACCAGGAGCACTCCTATGGCGCGCAGATCCCAGTGGACCTATCGGAACTCAAAGAGTATTCCCTCTTCCCTGGACAG atccttaatataacttatgcttcacaattgtattttccactttcacccagGAGCCTGTTATCCTCCTGGGTCAGATTGGCTCTGATGGCAACAGGAAGCTGAACAGCAAGTCTGTTATTCTTGAGGGAGACCAAGAGCACTCTTATGGTGCACAAATCCCAGCAGACCTCTTAGACCTGAAAAAGTATTCACTTTTCCCTGGGGAGgtaagctgatgaccttctgtcattggattgatgccttaaggcaagtcaga #### Pold4_ID438_3 --> 2 - 2 Original Alignment gtATCACAAGG---CTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCag cactccactaccaccccctgattgtctctcataactcatgcctccaccaggtATCTCGAGGTTGTTGCAGTGC---AGCCGTGCAGAGCAGATGGGCTTGACGCCCCCTCTAGAGGTGTATCCTGTGTTGAAAGCCCACCCTGAAGACCCTCACTATTGGTGTacgtttgtacagcctgtctatctggaagctcatctggagtgtgttagctcac Alignment from CESAR gtATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCag cactccactaccaccccctgattgtctctcataactcatgcctccaccaggtATCTCGAGGTTGTTGCAGTGCAGCCGTGCAGAGCAGATGGGCTTGACGCCCCCTCTAGAGGTGTATCCTGTGTTGAAAGCCCACCCTGAAGACCCTCACTATTGGTGTacgtttgtacagcctgtctatctggaagctcatctggagtgtgttagctcac Alignment from Spaln_aa2Genome GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG cactccactaccaccccctgattgtctctcataactcatgcctccaccagGTATCTCGAGGTTGTTGCAGTGCAGCCGTGCAGAGCAGATGGGCTTGACGCCCCCTCTAGAGGTGTATCCTGTGTTGAAAGCCCACCCTGAAGACCCTCACTATTGGTGTACgtttgtacagcctgtctatctggaagctcatctggagtgtgttagctcac Alignment from Spaln_nt2Genome GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG cactccactaccaccccctgattgtctctcataactcatgcctccaccagGTATCTCGAGGTTGTTGCAGTGCAGCCGTGCAGAGCAGATGGGCTTGACGCCCCCTCTAGAGGTGTATCCTGTGTTGAAAGCCCACCCTGAAGACCCTCACTATTGGTGTACgtttgtacagcctgtctatctggaagctcatctggagtgtgttagctcac Alignment from Pairagon GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCAC------- cactccactaccaccccctgattgtctctcataactcatgcctccaccagGTATCTCGAGGTTGTTGCAGTGCAGCCGTGCAGAGCAGATGGGCTTGACGCCCCCTCTAGAGGTGTATCCTGTGTTGAAAGCCCACCCTGAAGACCCTCACTATTGGTgtacgtttgtacagcctgtctatctggaagctcatctggagtgtgttagctcac Alignment from Exonerate_protein2genome GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG cactccactaccaccccctgattgtctctcataactcatgcctccaccagGTATCTCGAGGTTGTTGCAGTGCAGCCGTGCAGAGCAGATGGGCTTGACGCCCCCTCTAGAGGTGTATCCTGTGTTGAAAGCCCACCCTGAAGACCCTCACTATTGGTGTACgtttgtacagcctgtctatctggaagctcatctggagtgtgttagctcac Alignment from Exonerate_coding2genome GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAGC cactccactaccaccccctgattgtctctcataactcatgcctccaccagGTATCTCGAGGTTGTTGCAGTGCAGCCGTGCAGAGCAGATGGGCTTGACGCCCCCTCTAGAGGTGTATCCTGTGTTGAAAGCCCACCCTGAAGACCCTCACTATTGGTGTACGtttgtacagcctgtctatctggaagctcatctggagtgtgttagctcac Alignment from GeneWise GTATCACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAGCCTGTGGCATCTCTACCCACTC cactccactaccaccccctgattgtctctcataactcatgcctccaccagGTATCTCGAGGTTGTTGCAGTGCAGCCGTGCAGAGCAGATGGGCTTGACGCCCCCTCTAGAGGTGTATCCTGTGTTGAAAGCCCACCCTGAAGACCCTCACTATTGGTGTACGTTT------GTACAGCCTGTCtatctggaagctcatctggagtgtgtta #### Polr2g_ID2377_6 --> 0 - 0 Original Alignment GACATTGTGATTCAGCAG---GACGATGAGATACGCTTGAAGATTGTAGGCACGCGTGTAGACAAGAATGACATT agagagggcagcaattcaggtcagggccagtgtccttctccctcccatagGGCATATTGATTCAGCTGGATGAG------ATACAGCTAAAGATAATAGGGACACATGTAGATAAAAATGATGTTgtcagtcaagccaggcttttgttctttgtttatatcacatcatggattca Alignment from CESAR GACATTGTGATTCAGCAGGACGATGAGATACGCTTGAAGATTGTAGGCACGCGTGTAGACAAGAATGACATT agagagggcagcaattcaggtcagggccagtgtccttctccctcccatagGGCATATTGATTCAGCTG---GATGAGATACAGCTAAAGATAATAGGGACACATGTAGATAAAAATGATGTTgtcagtcaagccaggcttttgttctttgtttatatcacatcatggattca Alignment from Spaln_aa2Genome GACATTGTGATTCAGCAGGACGATGAGATACGCTTGAAGATTGTAGGCACGCGTGTAGACAAGAATGACATT agagagggcagcaattcaggtcagggccagtgtccttctccctcccatagGGCATATTGATTCAGCTG---GATGAGATACAGCTAAAGATAATAGGGACACATGTAGATAAAAATGATGTTgtcagtcaagccaggcttttgttctttgtttatatcacatcatggattca Alignment from Spaln_nt2Genome GACATTGTGATTCAGCAGGACGATGAGATACGCTTGAAGATTGTAGGCACGCGTGTAGACAAGAATGACATT agagagggcagcaattcaggtcagggccagtgtccttctccctcccatagGGCATATTGATTCAGCTG---GATGAGATACAGCTAAAGATAATAGGGACACATGTAGATAAAAATGATGTTgtcagtcaagccaggcttttgttctttgtttatatcacatcatggattca Alignment from Pairagon GACATTGTGATTCAGCAGGACGATGAGATACGCTTGAAGATTGTAGGCACGCGTGTAGACAAGAATGACATT agagagggcagcaattcaggtcagggccagtgtccttctccctcccatagGGCATATTGATTCAGCTG---GATGAGATACAGCTAAAGATAATAGGGACACATGTAGATAAAAATGATGTTgtcagtcaagccaggcttttgttctttgtttatatcacatcatggattca Alignment from Exonerate_protein2genome GACATTGTGATTCAGCAGGACGATGAGATACGCTTGAAGATTGTAGGCACGCGTGTAGACAAGAATGACATT agagagggcagcaattcaggtcagggccagtgtccttctccctcccatagGGCATATTGATTCAGCTG---GATGAGATACAGCTAAAGATAATAGGGACACATGTAGATAAAAATGATGTTgtcagtcaagccaggcttttgttctttgtttatatcacatcatggattca Alignment from Exonerate_coding2genome agagagggcagcaattcaggtcagggccagtgtccttctccctcccatagggcatattgattcagctggatgagatacagctaaagataatagggacacatgtagataaaaatgatgttgtcagtcaagccaggcttttgttctttgtttatatcacatcatggattca Alignment from GeneWise GACATTGTGATTCAGCAGGACGATGAGATACGCTTGAAGATTGTAGGCACGCGTGTAGACAAGAATGACATTTTTGCCATTGGCTCTCTGATGGACGACTACTTGGGGCTCGTGAGC agagagggcagcaattcaggtcagggccagtgtccttctccctcccatagGGCATATTGATTCAGCTGGAT---GAGATACAGCTAAAGATAATAGGGACACATGTAGATAAAAATGATGTTGTCAGTCAAGCCAGGCTTTTGTTC---TTTGTTTATATCACATCAtggat #### Polr2g_ID2380_3 --> 1 - 0 Original Alignment aTATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGAGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCACTCAGGTCAACAAG gcatgaggtggtaaattatttatgtgctccctctgccattgtgtctgcagaTATGGCTTTATAATTTCTGTCACCACCATCGACAATATTGGTGCTGGTGTAATCCAGCCAGGCCGGGGTTTTGTTCTTTACCCAGTGAAATACAAAGCTATTGTCTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTTGTTGCACAAGTTAACAAGgtaaccttgttgcagattgtgtatcaacagaaaaaaaaagaaagaaaaaa Alignment from CESAR aTATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGAGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCACTCAGGTCAACAAG gcatgaggtggtaaattatttatgtgctccctctgccattgtgtctgcagaTATGGCTTTATAATTTCTGTCACCACCATCGACAATATTGGTGCTGGTGTAATCCAGCCAGGCCGGGGTTTTGTTCTTTACCCAGTGAAATACAAAGCTATTGTCTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTTGTTGCACAAGTTAACAAGgtaaccttgttgcagattgtgtatcaacagaaaaaaaaagaaagaaaaaa Alignment from Spaln_aa2Genome ATATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGAGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCACTCAGGTCAACAAG gcatgaggtggtaaattatttatgtgctccctctgccattgtgtctgcagATATGGCTTTATAATTTCTGTCACCACCATCGACAATATTGGTGCTGGTGTAATCCAGCCAGGCCGGGGTTTTGTTCTTTACCCAGTGAAATACAAAGCTATTGTCTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTTGTTGCACAAGTTAACAAGgtaaccttgttgcagattgtgtatcaacagaaaaaaaaagaaagaaaaaa Alignment from Spaln_nt2Genome ATATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGAGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCACTCAGGTCAACAAG gcatgaggtggtaaattatttatgtgctccctctgccattgtgtctgcagATATGGCTTTATAATTTCTGTCACCACCATCGACAATATTGGTGCTGGTGTAATCCAGCCAGGCCGGGGTTTTGTTCTTTACCCAGTGAAATACAAAGCTATTGTCTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTTGTTGCACAAGTTAACAAGgtaaccttgttgcagattgtgtatcaacagaaaaaaaaagaaagaaaaaa Alignment from Pairagon ATATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGAGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCACTCAGGTCAACAAG gcatgaggtggtaaattatttatgtgctccctctgccattgtgtctgcagATATGGCTTTATAATTTCTGTCACCACCATCGACAATATTGGTGCTGGTGTAATCCAGCCAGGCCGGGGTTTTGTTCTTTACCCAGTGAAATACAAAGCTATTGTCTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTTGTTGCACAAGTTAACAAGgtaaccttgttgcagattgtgtatcaacagaaaaaaaaagaaagaaaaaa Alignment from Exonerate_protein2genome ATATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGAGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCACTCAGGTCAACAAG gcatgaggtggtaaattatttatgtgctccctctgccattgtgtctgcagATATGGCTTTATAATTTCTGTCACCACCATCGACAATATTGGTGCTGGTGTAATCCAGCCAGGCCGGGGTTTTGTTCTTTACCCAGTGAAATACAAAGCTATTGTCTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTTGTTGCACAAGTTAACAAGgtaaccttgttgcagattgtgtatcaacagaaaaaaaaagaaagaaaaaa Alignment from Exonerate_coding2genome ATATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGAGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCACTCAGGTCAACAAG gcatgaggtggtaaattatttatgtgctccctctgccattgtgtctgcagATATGGCTTTATAATTTCTGTCACCACCATCGACAATATTGGTGCTGGTGTAATCCAGCCAGGCCGGGGTTTTGTTCTTTACCCAGTGAAATACAAAGCTATTGTCTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTTGTTGCACAAGTTAACAAGgtaaccttgttgcagattgtgtatcaacagaaaaaaaaagaaagaaaaaa Alignment from GeneWise ATATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGAGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCACTCAGGTCAACAAG gcatgaggtggtaaattatttatgtgctccctctgccattgtgtctgcagATATGGCTTTATAATTTCTGTCACCACCATCGACAATATTGGTGCTGGTGTAATCCAGCCAGGCCGGGGTTTTGTTCTTTACCCAGTGAAATACAAAGCTATTGTCTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTTGTTGCACAAGTTAACAAGgtaaccttgttgcagattgtgtatcaacagaaaaaaaaagaaagaaaaaa #### Polr2g_ID2381_2 --> 0 - 2 Original Alignment ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGaa tcctgtccctggtcaagccagttaaagtcaggggtcatgctcttttacagATTTCCCTGGAGCGCGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACATGGTGAAGCAGAAGCCATTTACTGAAGTGGAGGGGACCTGCACTGGGaagtaagactcctctttacaggagcaagacctgttgaatgcattggcagcaa Alignment from CESAR ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGaa tcctgtccctggtcaagccagttaaagtcaggggtcatgctcttttacagATTTCCCTGGAGCGCGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACATGGTGAAGCAGAAGCCATTTACTGAAGTGGAGGGGACCTGCACTGGGaagtaagactcctctttacaggagcaagacctgttgaatgcattggcagcaa Alignment from Spaln_aa2Genome ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtccctggtcaagccagttaaagtcaggggtcatgctcttttacagATTTCCCTGGAGCGCGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACATGGTGAAGCAGAAGCCATTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtaagactcctctttacaggagcaagacctgttgaatgcattggcagcaa Alignment from Spaln_nt2Genome ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtccctggtcaagccagttaaagtcaggggtcatgctcttttacagATTTCCCTGGAGCGCGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACATGGTGAAGCAGAAGCCATTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtaagactcctctttacaggagcaagacctgttgaatgcattggcagcaa Alignment from Pairagon TTTTATCACATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA cctgtccctggtcaagccagttaaagtcaggggtcatgctcTTTTA-CAGATTTCCCTGGAGCGCGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACATGGTGAAGCAGAAGCCATTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtaagactcctctttacaggagcaagacctgttgaatgcattggcagcaa Alignment from Exonerate_protein2genome CACATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtccctggtcaagccagttaaagtcaggggtcatgctcttttaCAGATTTCCCTGGAGCGCGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACATGGTGAAGCAGAAGCCATTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtaagactcctctttacaggagcaagacctgttgaatgcattggcagcaa Alignment from Exonerate_coding2genome CACATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtccctggtcaagccagttaaagtcaggggtcatgctcttttaCAGATTTCCCTGGAGCGCGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACATGGTGAAGCAGAAGCCATTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtaagactcctctttacaggagcaagacctgttgaatgcattggcagcaa Alignment from GeneWise TTTTATCACATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtccctggtcaagccagttaaagtcaggggtcatgctCTTTTACAGATTTCCCTGGAGCGCGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACATGGTGAAGCAGAAGCCATTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtaagactcctctttacaggagcaagacctgttgaatgcattggcagcaa #### Ppp1ca_ID408_2 --> 2 - 1 Original Alignment tgCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTg accaccacaatgcatggggtcatgttctctcttgtttttaattcttttagtgCAGGGATCTAGGCCTGGAAAAAATGTACAGCTGACAGAGAATGAGATTCGGGGGCTTTGCCTCACATCTCGGGAAATTTTCTTAAGCCAACCCATTCTTCTAGAACTTGAAGCACTGCTCAAGATCTGTggtgagacaagtatagcacagcttccctggacaaagatgctcatgtaggta Alignment from CESAR tgCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTg accaccacaatgcatggggtcatgttctctcttgtttttaattcttttagtgCAGGGATCTAGGCCTGGAAAAAATGTACAGCTGACAGAGAATGAGATTCGGGGGCTTTGCCTCACATCTCGGGAAATTTTCTTAAGCCAACCCATTCTTCTAGAACTTGAAGCACTGCTCAAGATCTGTggtgagacaagtatagcacagcttccctggacaaagatgctcatgtaggta Alignment from Spaln_aa2Genome TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG accaccacaatgcatggggtcatgttctctcttgtttttaattcttttagTGCAGGGATCTAGGCCTGGAAAAAATGTACAGCTGACAGAGAATGAGATTCGGGGGCTTTGCCTCACATCTCGGGAAATTTTCTTAAGCCAACCCATTCTTCTAGAACTTGAAGCACTGCTCAAGATCTGTGgtgagacaagtatagcacagcttccctggacaaagatgctcatgtaggta Alignment from Spaln_nt2Genome TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG accaccacaatgcatggggtcatgttctctcttgtttttaattcttttagTGCAGGGATCTAGGCCTGGAAAAAATGTACAGCTGACAGAGAATGAGATTCGGGGGCTTTGCCTCACATCTCGGGAAATTTTCTTAAGCCAACCCATTCTTCTAGAACTTGAAGCACTGCTCAAGATCTGTGgtgagacaagtatagcacagcttccctggacaaagatgctcatgtaggta Alignment from Pairagon TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG accaccacaatgcatggggtcatgttctctcttgtttttaattcttttagTGCAGGGATCTAGGCCTGGAAAAAATGTACAGCTGACAGAGAATGAGATTCGGGGGCTTTGCCTCACATCTCGGGAAATTTTCTTAAGCCAACCCATTCTTCTAGAACTTGAAGCACTGCTCAAGATCTGTGgtgagacaagtatagcacagcttccctggacaaagatgctcatgtaggta Alignment from Exonerate_protein2genome TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG accaccacaatgcatggggtcatgttctctcttgtttttaattcttttagTGCAGGGATCTAGGCCTGGAAAAAATGTACAGCTGACAGAGAATGAGATTCGGGGGCTTTGCCTCACATCTCGGGAAATTTTCTTAAGCCAACCCATTCTTCTAGAACTTGAAGCACTGCTCAAGATCTGTGgtgagacaagtatagcacagcttccctggacaaagatgctcatgtaggta Alignment from Exonerate_coding2genome TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG accaccacaatgcatggggtcatgttctctcttgtttttaattcttttagTGCAGGGATCTAGGCCTGGAAAAAATGTACAGCTGACAGAGAATGAGATTCGGGGGCTTTGCCTCACATCTCGGGAAATTTTCTTAAGCCAACCCATTCTTCTAGAACTTGAAGCACTGCTCAAGATCTGTGgtgagacaagtatagcacagcttccctggacaaagatgctcatgtaggta Alignment from GeneWise TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG accaccacaatgcatggggtcatgttctctcttgtttttaattcttttagTGCAGGGATCTAGGCCTGGAAAAAATGTACAGCTGACAGAGAATGAGATTCGGGGGCTTTGCCTCACATCTCGGGAAATTTTCTTAAGCCAACCCATTCTTCTAGAACTTGAAGCACTGCTCAAGATCTGTGgtgagacaagtatagcacagcttccctggacaaagatgctcatgtaggta #### Ppp1r14b_ID1939_2 --> 0 - 0 Original Alignment GAGGAGGAGATCCCGGAGCTCGAGATAGATGTGGATGAACTTTTAGACATGGAGAGTGATGATACCCGGGCTGCTAGGGTCAAG tacacttgcctggctttgctcatctgagcatgtgacttgttaattgctagGAGGAGGAGATCCCAGAGCTCGAGATAGATGTGGATGAACTGTTAGATATGGAGAGTGATGATACCCGGGCTGCTCGGGTCAAGgtacctttagcatattgaggttagggttgtaaaagacagtgagctcattc Alignment from CESAR GAGGAGGAGATCCCGGAGCTCGAGATAGATGTGGATGAACTTTTAGACATGGAGAGTGATGATACCCGGGCTGCTAGGGTCAAG tacacttgcctggctttgctcatctgagcatgtgacttgttaattgctagGAGGAGGAGATCCCAGAGCTCGAGATAGATGTGGATGAACTGTTAGATATGGAGAGTGATGATACCCGGGCTGCTCGGGTCAAGgtacctttagcatattgaggttagggttgtaaaagacagtgagctcattc Alignment from Spaln_aa2Genome GAGGAGGAGATCCCGGAGCTCGAGATAGATGTGGATGAACTTTTAGACATGGAGAGTGATGATACCCGGGCTGCTAGGGTCAAG tacacttgcctggctttgctcatctgagcatgtgacttgttaattgctagGAGGAGGAGATCCCAGAGCTCGAGATAGATGTGGATGAACTGTTAGATATGGAGAGTGATGATACCCGGGCTGCTCGGGTCAAGgtacctttagcatattgaggttagggttgtaaaagacagtgagctcattc Alignment from Spaln_nt2Genome GAGGAGGAGATCCCGGAGCTCGAGATAGATGTGGATGAACTTTTAGACATGGAGAGTGATGATACCCGGGCTGCTAGGGTCAAG tacacttgcctggctttgctcatctgagcatgtgacttgttaattgctagGAGGAGGAGATCCCAGAGCTCGAGATAGATGTGGATGAACTGTTAGATATGGAGAGTGATGATACCCGGGCTGCTCGGGTCAAGgtacctttagcatattgaggttagggttgtaaaagacagtgagctcattc Alignment from Pairagon GAGGAGGAGATCCCGGAGCTCGAGATAGATGTGGATGAACTTTTAGACATGGAGAGTGATGATACCCGGGCTGCTAGGGTCAAG tacacttgcctggctttgctcatctgagcatgtgacttgttaattgctagGAGGAGGAGATCCCAGAGCTCGAGATAGATGTGGATGAACTGTTAGATATGGAGAGTGATGATACCCGGGCTGCTCGGGTCAAGgtacctttagcatattgaggttagggttgtaaaagacagtgagctcattc Alignment from Exonerate_protein2genome GAGGAGGAGATCCCGGAGCTCGAGATAGATGTGGATGAACTTTTAGACATGGAGAGTGATGATACCCGGGCTGCTAGGGTCAAG tacacttgcctggctttgctcatctgagcatgtgacttgttaattgctagGAGGAGGAGATCCCAGAGCTCGAGATAGATGTGGATGAACTGTTAGATATGGAGAGTGATGATACCCGGGCTGCTCGGGTCAAGgtacctttagcatattgaggttagggttgtaaaagacagtgagctcattc Alignment from Exonerate_coding2genome GAGGAGGAGATCCCGGAGCTCGAGATAGATGTGGATGAACTTTTAGACATGGAGAGTGATGATACCCGGGCTGCTAGGGTCAAG tacacttgcctggctttgctcatctgagcatgtgacttgttaattgctagGAGGAGGAGATCCCAGAGCTCGAGATAGATGTGGATGAACTGTTAGATATGGAGAGTGATGATACCCGGGCTGCTCGGGTCAAGgtacctttagcatattgaggttagggttgtaaaagacagtgagctcattc Alignment from GeneWise GAGGAGGAGATCCCGGAGCTCGAGATAGATGTGGATGAACTTTTAGACATGGAGAGTGATGATACCCGGGCTGCTAGGGTCAAG tacacttgcctggctttgctcatctgagcatgtgacttgttaattgctagGAGGAGGAGATCCCAGAGCTCGAGATAGATGTGGATGAACTGTTAGATATGGAGAGTGATGATACCCGGGCTGCTCGGGTCAAGgtacctttagcatattgaggttagggttgtaaaagacagtgagctcattc #### Ppp1r14b_ID1940_3 --> 0 - 0 Original Alignment GAGCTGTTAGTTGACTGTTACAAACCCACTGAG atgagaaaccctgagcccaagaagccatcaacttctaatccttccatcagCAACTATTAGTTGACTGTTATAAACCCACTGAGgtgagctactgcccctccccacaggcatgaagctgttcctttggttcttt Alignment from CESAR GAGCTGTTAGTTGACTGTTACAAACCCACTGAG atgagaaaccctgagcccaagaagccatcaacttctaatccttccatcagCAACTATTAGTTGACTGTTATAAACCCACTGAGgtgagctactgcccctccccacaggcatgaagctgttcctttggttctga Alignment from Spaln_aa2Genome GAGCTGTTAGTTGACTGTTACAAACCCACTGAG atgagaaaccctgagcccaagaagccatcaacttctaatccttccatcagCAACTATTAGTTGACTGTTATAAACCCACTGAGgtgagctactgcccctccccacaggcatgaagctgttcctttggttcttt Alignment from Spaln_nt2Genome GAGCTGTTAGTTGACTGTTACAAACCCACTGAG atgagaaaccctgagcccaagaagccatcaacttctaatccttccatcagCAACTATTAGTTGACTGTTATAAACCCACTGAGgtgagctactgcccctccccacaggcatgaagctgttcctttggttcttt Alignment from Pairagon GAGCTGTTAGTTGACTGTTACAAACCCACTGAG atgagaaaccctgagcccaagaagccatcaacttctaatccttccatcagCAACTATTAGTTGACTGTTATAAACCCACTGAGgtgagctactgcccctccccacaggcatgaagctgttcctttggttcttt Alignment from Exonerate_protein2genome GAGCTGTTAGTTGACTGTTACAAACCCACTGAG atgagaaaccctgagcccaagaagccatcaacttctaatccttccatcagCAACTATTAGTTGACTGTTATAAACCCACTGAGgtgagctactgcccctccccacaggcatgaagctgttcctttggttcttt Alignment from Exonerate_coding2genome GAGCTGTTAGTTGACTGTTACAAACCCACTGAG atgagaaaccctgagcccaagaagccatcaacttctaatccttccatcagCAACTATTAGTTGACTGTTATAAACCCACTGAGgtgagctactgcccctccccacaggcatgaagctgttcctttggttcttt Alignment from GeneWise --------CTGTTAGTTG atgagaaaccctgagcccaagaagccatcaacttctaatccttccatcagcaactattagttgactgttataaacccactgaggtgagctactgcccctccccacaggcatgaagCTGTTCCTTTGGTTCTTT #### Ppp1r32_ID2843_8 --> 0 - 0 Original Alignment GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acactctgttgctccatgtggtgcaactatttccctgtttttctggtcagGGGAGTGATTTCTTGCCGGTGCTGTCCAGAGGATCTGATCGGGACACAGGATTTAGCCGAGTAAATGAAAGAACACTAAAGCTAAGAgtaagcatgactcagggtaagacaatgtatagttgtctctgtctacaccc Alignment from CESAR GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acactctgttgctccatgtggtgcaactatttccctgtttttctggtcagGGGAGTGATTTCTTGCCGGTGCTGTCCAGAGGATCTGATCGGGACACAGGATTTAGCCGAGTAAATGAAAGAACACTAAAGCTAAGAgtaagcatgactcagggtaagacaatgtatagttgtctctgtctacaccc Alignment from Spaln_aa2Genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acactctgttgctccatgtggtgcaactatttccctgtttttctggtcagGGGAGTGATTTCTTGCCGGTGCTGTCCAGAGGATCTGATCGGGACACAGGATTTAGCCGAGTAAATGAAAGAACACTAAAGCTAAGAgtaagcatgactcagggtaagacaatgtatagttgtctctgtctacaccc Alignment from Spaln_nt2Genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acactctgttgctccatgtggtgcaactatttccctgtttttctggtcagGGGAGTGATTTCTTGCCGGTGCTGTCCAGAGGATCTGATCGGGACACAGGATTTAGCCGAGTAAATGAAAGAACACTAAAGCTAAGAgtaagcatgactcagggtaagacaatgtatagttgtctctgtctacaccc Alignment from Pairagon GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acactctgttgctccatgtggtgcaactatttccctgtttttctggtcagGGGAGTGATTTCTTGCCGGTGCTGTCCAGAGGATCTGATCGGGACACAGGATTTAGCCGAGTAAATGAAAGAACACTAAAGCTAAGAgtaagcatgactcagggtaagacaatgtatagttgtctctgtctacaccc Alignment from Exonerate_protein2genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acactctgttgctccatgtggtgcaactatttccctgtttttctggtcagGGGAGTGATTTCTTGCCGGTGCTGTCCAGAGGATCTGATCGGGACACAGGATTTAGCCGAGTAAATGAAAGAACACTAAAGCTAAGAgtaagcatgactcagggtaagacaatgtatagttgtctctgtctacaccc Alignment from Exonerate_coding2genome ACGGAGTATCACCAAGTCAGACTACCTCCCTGTAACTCACCCTCAGGGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acacTCTGTTGCTCCATGTGGTGCAACTATTTCCCTGTTTTTCTGGTCAGGGGAGTGATTTCTTGCCGGTGCTGTCCAGAGGATCTGATCGGGACACAGGATTTAGCCGAGTAAATGAAAGAACACTAAAGCTAAGAgtaagcatgactcagggtaagacaatgtatagttgtctctgtctacaccc Alignment from GeneWise GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acactctgttgctccatgtggtgcaactatttccctgtttttctggtcagGGGAGTGATTTCTTGCCGGTGCTGTCCAGAGGATCTGATCGGGACACAGGATTTAGCCGAGTAAATGAAAGAACACTAAAGCTAAGAgtaagcatgactcagggtaagacaatgtatagttgtctctgtctacaccc #### Ppp1r32_ID2847_4 --> 0 - 0 Original Alignment GTCAGGAAGGTCCACTTCGACACCCAGGATCACGGGCCTCAGACTATCACAGGACTGGAGCCCAAGGAGGTTCCCCTGATCCACCAGCAGCAGGGCAAGGGCTCCACGGAGTGGGAGAACTCGCACTAT caaattcttctattgacagacaacactctttctgttggtgttttgcccagGACAGGAAGGTACAGTTTGGT---AAGGATCATGGGCCTCAGACAATAATAGGATTGGAAACCAAG------CCCTTAATCCACCAGCAGCAAGGGAAGGGCTTCACAGAGTGGGAGAACTTGCATTATgtgaggcaaatacctgacagggagctactcctaaggccatgtcattttcc Alignment from CESAR GTCAGGAAGGTCCACTTCGACACCCAGGATCACGGGCCTCAGACTATCACAGGACTGGAGCCCAAGGAGGTTCCCCTGATCCACCAGCAGCAGGGCAAGGGCTCCACGGAGTGGGAGAACTCGCACTAT caaattcttctattgacagacaacactctttctgttggtgttttgcccagGACAGGAAGGTACAGTTTGGT---AAGGATCATGGGCCTCAGACAATAATAGGATTGGAAACCAAG------CCCTTAATCCACCAGCAGCAAGGGAAGGGCTTCACAGAGTGGGAGAACTTGCATTATgtgaggcaaatacctgacagggagctactcctaaggccatgtcattttcc Alignment from Spaln_aa2Genome GTCAGGAAGGTCCACTTCGACACCCAGGATCACGGGCCTCAGACTATCACAGGACTGGAGCCCAAGGAGGTTCCCCTGATCCACCAGCAGCAGGGCAAGGGCTCCACGGAGTGGGAGAACTCGCACTAT caaattcttctattgacagacaacactctttctgttggtgttttgcccagGACAGGAAGGTACAGTTTGGT---AAGGATCATGGGCCTCAGACAATAATAGGATTGGAAACCAAG------CCCTTAATCCACCAGCAGCAAGGGAAGGGCTTCACAGAGTGGGAGAACTTGCATTATgtgaggcaaatacctgacagggagctactcctaaggccatgtcattttcc Alignment from Spaln_nt2Genome GTCAGGAAGGTCCACTTCGACACCCAGGATCACGGGCCTCAGACTATCACAGGACTGGAGCCCAAGGAGGTTCCCCTGATCCACCAGCAGCAGGGCAAGGGCTCCACGGAGTGGGAGAACTCGCACTAT caaattcttctattgacagacaacactctttctgttggtgttttgcccagGACAGGAAGGTACAGTTTGGTA---AGGATCATGGGCCTCAGACAATAATAGGATTGGAAACCAAG------CCCTTAATCCACCAGCAGCAAGGGAAGGGCTTCACAGAGTGGGAGAACTTGCATTATgtgaggcaaatacctgacagggagctactcctaaggccatgtcattttcc Alignment from Pairagon GTCAGGAAGGTCCACTTCGACACCCAGGATCACGGGCCTCAGACTATCACAGGACTGGAGCCCAAGGAGGTTCCCCTGATCCACCAGCAGCAGGGCAAGGGCTCCACGGAGTGGGAGAACTCGCACTAT caaattcttctattgacagacaacactctttctgttggtgttttgcccagGACAGGAAGGTACAGTTTGGTA---AGGATCATGGGCCTCAGACAATAATAGGATTGGAAACCAAG------CCCTTAATCCACCAGCAGCAAGGGAAGGGCTTCACAGAGTGGGAGAACTTGCATTATgtgaggcaaatacctgacagggagctactcctaaggccatgtcattttcc Alignment from Exonerate_protein2genome GTCAGGAAGGTCCACTTCGACACCCAGGATCACGGGCCTCAGACTATCACAGGACTGGAGCCCAAGGAGGTTCCCCTGATCCACCAGCAGCAGGGCAAGGGCTCCACGGAGTGGGAGAACTCGCACTAT caaattcttctattgacagacaacactctttctgttggtgttttgcccagGACAGGAAGGTACAGTTTGGT---AAGGATCATGGGCCTCAGACAATAATAGGATTGGAAACCAAG------CCCTTAATCCACCAGCAGCAAGGGAAGGGCTTCACAGAGTGGGAGAACTTGCATTATgtgaggcaaatacctgacagggagctactcctaaggccatgtcattttcc Alignment from Exonerate_coding2genome GTCAGGAAGGTCCACTTCGACACCCAGGATCACGGGCCTCAGACTATCACAGGACTGGAGCCCAAGGAGGTTCCCCTGATCCACCAGCAGCAGGGCAAGGGCTCCACGGAGTGGGAGAACTCGCACTAT caaattcttctattgacagacaacactctttctgttggtgttttgcccagGACAGGAAGGTACAGTTTGGT---AAGGATCATGGGCCTCAGACAATAATAGGATTGGAAACCAAG------CCCTTAATCCACCAGCAGCAAGGGAAGGGCTTCACAGAGTGGGAGAACTTGCATTATgtgaggcaaatacctgacagggagctactcctaaggccatgtcattttcc Alignment from GeneWise GTCAGGAAGGTCCACTTCGACACCCAGGATCACGGGCCTCAGACTATCACAGGACTGGAGCCCAAGGAGGTTCCCCTGATCCACCAGCAGCAGGGCAAGGGCTCCACGGAGTGGGAGAACTCGCACTAT caaattcttctattgacagacaacactctttctgttggtgttttgcccagGACAGGAAGGTACAGTTTGGT---AAGGATCATGGGCCTCAGACAATAATAGGATTGGAAACCAAG------CCCTTAATCCACCAGCAGCAAGGGAAGGGCTTCACAGAGTGGGAGAACTTGCATTATgtgaggcaaatacctgacagggagctactcctaaggccatgtcattttcc #### Ppp1r32_ID2849_2 --> 2 - 2 Original Alignment gtCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAgg gcatgctgctctttgcctgagttctggtacatttattctcttttctgcaggtCGGGAGGAGTTTAAGCCCCGCCTCGGAAGTCATGTATGTGCAGGCTACAAATCCAACTATCGGCCTCTGGTCTCCTACCAACCACACCAGGATACTCTGGACAATCCAGCGATAgggtgagcttggctgcacatagccctgggactaacatctttttttggcagct Alignment from CESAR gtCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAgg gcatgctgctctttgcctgagttctggtacatttattctcttttctgcaggtCGGGAGGAGTTTAAGCCCCGCCTCGGAAGTCATGTATGTGCAGGCTACAAATCCAACTATCGGCCTCTGGTCTCCTACCAACCACACCAGGATACTCTGGACAATCCAGCGATAgggtgagcttggctgcacatagccctgggactaacatctttttttggcagct Alignment from Spaln_aa2Genome GTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAGG gcatgctgctctttgcctgagttctggtacatttattctcttttctgcagGTCGGGAGGAGTTTAAGCCCCGCCTCGGAAGTCATGTATGTGCAGGCTACAAATCCAACTATCGGCCTCTGGTCTCCTACCAACCACACCAGGATACTCTGGACAATCCAGCGATAGGgtgagcttggctgcacatagccctgggactaacatctttttttggcagct Alignment from Spaln_nt2Genome GTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAGG gcatgctgctctttgcctgagttctggtacatttattctcttttctgcagGTCGGGAGGAGTTTAAGCCCCGCCTCGGAAGTCATGTATGTGCAGGCTACAAATCCAACTATCGGCCTCTGGTCTCCTACCAACCACACCAGGATACTCTGGACAATCCAGCGATAGGgtgagcttggctgcacatagccctgggactaacatctttttttggcagct Alignment from Pairagon GTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAGG gcatgctgctctttgcctgagttctggtacatttattctcttttctgcagGTCGGGAGGAGTTTAAGCCCCGCCTCGGAAGTCATGTATGTGCAGGCTACAAATCCAACTATCGGCCTCTGGTCTCCTACCAACCACACCAGGATACTCTGGACAATCCAGCGATAGGgtgagcttggctgcacatagccctgggactaacatctttttttggcagct Alignment from Exonerate_protein2genome GTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAGG gcatgctgctctttgcctgagttctggtacatttattctcttttctgcagGTCGGGAGGAGTTTAAGCCCCGCCTCGGAAGTCATGTATGTGCAGGCTACAAATCCAACTATCGGCCTCTGGTCTCCTACCAACCACACCAGGATACTCTGGACAATCCAGCGATAGGgtgagcttggctgcacatagccctgggactaacatctttttttggcagct Alignment from Exonerate_coding2genome GTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAGG gcatgctgctctttgcctgagttctggtacatttattctcttttctgcagGTCGGGAGGAGTTTAAGCCCCGCCTCGGAAGTCATGTATGTGCAGGCTACAAATCCAACTATCGGCCTCTGGTCTCCTACCAACCACACCAGGATACTCTGGACAATCCAGCGATAGGgtgagcttggctgcacatagccctgggactaacatctttttttggcagct Alignment from GeneWise GTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAGG gcatgctgctctttgcctgagttctggtacatttattctcttttctgcagGTCGGGAGGAGTTTAAGCCCCGCCTCGGAAGTCATGTATGTGCAGGCTACAAATCCAACTATCGGCCTCTGGTCTCCTACCAACCACACCAGGATACTCTGGACAATCCAGCGATAGGgtgagcttggctgcacatagccctgggactaacatctttttttggcagct #### Ppp6r3_ID73_20 --> 2 - 2 Original Alignment caCCAGGCAGTATGGCCATGGAAGCCAGCTCAGATGGGGAAGAGGATGCTGAGAGTACAGACAAGGTAACTGAGACCGTGATGAATGGCGGCATGAAGGAAACACTCAGCCTCACTGTAGACGCCAAGACAGAGACTGCAGTCTTCAAAag taggagaaaggggccagaactcaaggactctacaaatctattcttaacagccCCTGGTGGTATG------GAGGCCAGTTCAGATGGGGAAGAGGATGCTGAAAGTACAGATATGGTAACAGAGACTGTGATGAATGGTGGTATGAAGGAAACACTTAGCCTCACAGTAGATGCTAAGACAGAGACTACTGTCTTTAAGaggtaggtgcttcttaactagtcatgaaagggttttctaactagtaggcata Alignment from CESAR caCCAGGCAGTATGGCCATGGAAGCCAGCTCAGATGGGGAAGAGGATGCTGAGAGTACAGACAAGGTAACTGAGACCGTGATGAATGGCGGCATGAAGGAAACACTCAGCCTCACTGTAGACGCCAAGACAGAGACTGCAGTCTTCAAAag taggagaaaggggccagaactcaaggactctacaaatctattcttaacagccCCTGGTGGT------ATGGAGGCCAGTTCAGATGGGGAAGAGGATGCTGAAAGTACAGATATGGTAACAGAGACTGTGATGAATGGTGGTATGAAGGAAACACTTAGCCTCACAGTAGATGCTAAGACAGAGACTACTGTCTTTAAGaggtaggtgcttcttaactagtcatgaaagggttttctaactagtaggcata Alignment from Spaln_aa2Genome CACCAGGCAGTATGGCCATGGAAGCCAGCTCAGATGGGGAAGAGGATGCTGAGAGTACAGACAAGGTAACTGAGACCGTGATGAATGGCGGCATGAAGGAAACACTCAGCCTCACTGTAGACGCCAAGACAGAGACTGCAGTCTTCAAAAG taggagaaaggggccagaactcaaggactctacaaatctattcttaacagCCCCTGGT------GGTATGGAGGCCAGTTCAGATGGGGAAGAGGATGCTGAAAGTACAGATATGGTAACAGAGACTGTGATGAATGGTGGTATGAAGGAAACACTTAGCCTCACAGTAGATGCTAAGACAGAGACTACTGTCTTTAAGAGgtaggtgcttcttaactagtcatgaaagggttttctaactagtaggcata Alignment from Spaln_nt2Genome CACCAGGCAGTATGGCCATGGAAGCCAGCTCAGATGGGGAAGAGGATGCTGAGAGTACAGACAAGGTAACTGAGACCGTGATGAATGGCGGCATGAAGGAAACACTCAGCCTCACTGTAGACGCCAAGACAGAGACTGCAGTCTTCAAAAG taggagaaaggggccagaactcaaggactctacaaatctattcttaacagCCCCTGGTGGT------ATGGAGGCCAGTTCAGATGGGGAAGAGGATGCTGAAAGTACAGATATGGTAACAGAGACTGTGATGAATGGTGGTATGAAGGAAACACTTAGCCTCACAGTAGATGCTAAGACAGAGACTACTGTCTTTAAGAGgtaggtgcttcttaactagtcatgaaagggttttctaactagtaggcata Alignment from Pairagon CACCAGGCAGTATGGCCATGGAAGCCAGCTCAGATGGGGAAGAGGATGCTGAGAGTACAGACAAGGTAACTGAGACCGTGATGAATGGCGGCATGAAGGAAACACTCAGCCTCACTGTAGACGCCAAGACAGAGACTGCAGTCTTCAAAAG taggagaaaggggccagaactcaaggactctacaaatctattcttaacagCCCCTGGTGGT------ATGGAGGCCAGTTCAGATGGGGAAGAGGATGCTGAAAGTACAGATATGGTAACAGAGACTGTGATGAATGGTGGTATGAAGGAAACACTTAGCCTCACAGTAGATGCTAAGACAGAGACTACTGTCTTTAAGAGgtaggtgcttcttaactagtcatgaaagggttttctaactagtaggcata Alignment from Exonerate_protein2genome CACCAGGCAGTATGGCCATGGAAGCCAGCTCAGATGGGGAAGAGGATGCTGAGAGTACAGACAAGGTAACTGAGACCGTGATGAATGGCGGCATGAAGGAAACACTCAGCCTCACTGTAGACGCCAAGACAGAGACTGCAGTCTTCAAAAG taggagaaaggggccagaactcaaggactctacaaatctattcttaacagCCCCTGGT------GGTATGGAGGCCAGTTCAGATGGGGAAGAGGATGCTGAAAGTACAGATATGGTAACAGAGACTGTGATGAATGGTGGTATGAAGGAAACACTTAGCCTCACAGTAGATGCTAAGACAGAGACTACTGTCTTTAAGAGgtaggtgcttcttaactagtcatgaaagggttttctaactagtaggcata Alignment from Exonerate_coding2genome CACCAGGCAGTATGGCCATGGAAGCCAGCTCAGATGGGGAAGAGGATGCTGAGAGTACAGACAAGGTAACTGAGACCGTGATGAATGGCGGCATGAAGGAAACACTCAGCCTCACTGTAGACGCCAAGACAGAGACTGCAGTCTTCAAAAG taggagaaaggggccagaactcaaggactctacaaatctattcttaacagCCCCTGGT------GGTATGGAGGCCAGTTCAGATGGGGAAGAGGATGCTGAAAGTACAGATATGGTAACAGAGACTGTGATGAATGGTGGTATGAAGGAAACACTTAGCCTCACAGTAGATGCTAAGACAGAGACTACTGTCTTTAAGAGgtaggtgcttcttaactagtcatgaaagggttttctaactagtaggcata Alignment from GeneWise CACCAGGCAGTATGGCCATGGAAGCCAGCTCAGATGGGGAAGAGGATGCTGAGAGTACAGACAAGGTAACTGAGACCGTGATGAATGGCGGCATGAAGGAAACACTCAGCCTCACTGTAGACGCCAAGACAGAGACTGCAGTCTTCAAAAG taggagaaaggggccagaactcaaggactctacaaatctattcttaacagCCCCTGGT------GGTATGGAGGCCAGTTCAGATGGGGAAGAGGATGCTGAAAGTACAGATATGGTAACAGAGACTGTGATGAATGGTGGTATGAAGGAAACACTTAGCCTCACAGTAGATGCTAAGACAGAGACTACTGTCTTTAAGAGgtaggtgcttcttaactagtcatgaaagggttttctaactagtaggcata #### Ppp6r3_ID79_14 --> 0 - 2 Original Alignment GCCTTTTCTGATTATCAGATGCAACAAATGACG---TCCAATTTTATTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCaa acagagtctgacataactacctgcattttccttcactcctccccctccagGGGTTTTCTGATTACCAGATGCAGCAAAAGACTTCACCCAATTTTACTGACCAATATGGCTTCAATGATGAAAAGTTTGCAGATCAAGATGATAATGGCaagtaggtaagtttatcgcaatccacatgtgttatctctatggtgctcttta Alignment from CESAR GCCTTTTCTGATTATCAGATGCAACAAATGACGTCC---AATTTTATTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCaa acagagtctgacataactacctgcattttccttcactcctccccctccagGGGTTTTCTGATTACCAGATGCAGCAAAAGACTTCACCCAATTTTACTGACCAATATGGCTTCAATGATGAAAAGTTTGCAGATCAAGATGATAATGGCaagtaggtaagtttatcgcaatccacatgtgttatctctatggtgctcttta Alignment from Spaln_aa2Genome GCCTTTTCTGATTATCAGATGCAACAAATGACGTCC---AATTTTATTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCAA acagagtctgacataactacctgcattttccttcactcctccccctccagGGGTTTTCTGATTACCAGATGCAGCAAAAGACTTCACCCAATTTTACTGACCAATATGGCTTCAATGATGAAAAGTTTGCAGATCAAGATGATAATGGCAAgtaggtaagtttatcgcaatccacatgtgttatctctatggtgctcttta Alignment from Spaln_nt2Genome GCCTTTTCTGATTATCAGATGCAACAAATGACGTC---CAATTTTATTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCAA acagagtctgacataactacctgcattttccttcactcctccccctccagGGGTTTTCTGATTACCAGATGCAGCAAAAGACTTCACCCAATTTTACTGACCAATATGGCTTCAATGATGAAAAGTTTGCAGATCAAGATGATAATGGCAAgtaggtaagtttatcgcaatccacatgtgttatctctatggtgctcttta Alignment from Pairagon GCCTTTTCTGATTATCAGATGCAACAAATGACGT---CCAATTTTATTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCAA acagagtctgacataactacctgcattttccttcactcctccccctccagGGGTTTTCTGATTACCAGATGCAGCAAAAGACTTCACCCAATTTTACTGACCAATATGGCTTCAATGATGAAAAGTTTGCAGATCAAGATGATAATGGCAAgtaggtaagtttatcgcaatccacatgtgttatctctatggtgctcttta Alignment from Exonerate_protein2genome GCCTTTTCTGATTATCAGATGCAACAAATGACGTCC---AATTTTATTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCAA acagagtctgacataactacctgcattttccttcactcctccccctccagGGGTTTTCTGATTACCAGATGCAGCAAAAGACTTCACCCAATTTTACTGACCAATATGGCTTCAATGATGAAAAGTTTGCAGATCAAGATGATAATGGCAAgtaggtaagtttatcgcaatccacatgtgttatctctatggtgctcttta Alignment from Exonerate_coding2genome GCCTTTTCTGATTATCAGATGCAACAAATGACGTCC---AATTTTATTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCAA acagagtctgacataactacctgcattttccttcactcctccccctccagGGGTTTTCTGATTACCAGATGCAGCAAAAGACTTCACCCAATTTTACTGACCAATATGGCTTCAATGATGAAAAGTTTGCAGATCAAGATGATAATGGCAAgtaggtaagtttatcgcaatccacatgtgttatctctatggtgctcttta Alignment from GeneWise GCCTTTTCTGATTATCAGATGCAACAAATGACGTCC---AATTTTATTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCAA acagagtctgacataactacctgcattttccttcactcctccccctccagGGGTTTTCTGATTACCAGATGCAGCAAAAGACTTCACCCAATTTTACTGACCAATATGGCTTCAATGATGAAAAGTTTGCAGATCAAGATGATAATGGCAAgtaggtaagtttatcgcaatccacatgtgttatctctatggtgctcttta #### Ppp6r3_ID84_10 --> 0 - 2 Original Alignment CTTTTTCAAAAGTGTCAGTTAATAGAGCGAATACTTGAAGCCTGGGACACAAATGAGAAGAAAca gtgggttctttctctagccttcatcactccctccctgtaattaatcacagCTATTCCAAAAGTGCCAGTTAATAGAAAGGATACTTGAGGCCTGGGACACAAATGAGAAAAGAcagtaatcatagcctagcaagggactgcagaatgaactttatggtacactgc Alignment from CESAR CTTTTTCAAAAGTGTCAGTTAATAGAGCGAATACTTGAAGCCTGGGACACAAATGAGAAGAAAca gtgggttctttctctagccttcatcactccctccctgtaattaatcacagCTATTCCAAAAGTGCCAGTTAATAGAAAGGATACTTGAGGCCTGGGACACAAATGAGAAAAGAcagtaatcatagcctagcaagggactgcagaatgaactttatggtacactgc Alignment from Spaln_aa2Genome CTTTTTCAAAAGTGTCAGTTAATAGAGCGAATACTTGAAGCCTGGGACACAAATGAGAAGAAACA gtgggttctttctctagccttcatcactccctccctgtaattaatcacagCTATTCCAAAAGTGCCAGTTAATAGAAAGGATACTTGAGGCCTGGGACACAAATGAGAAAAGACAgtaatcatagcctagcaagggactgcagaatgaactttatggtacactgc Alignment from Spaln_nt2Genome CTTTTTCAAAAGTGTCAGTTAATAGAGCGAATACTTGAAGCCTGGGACACAAATGAGAAGAAACA gtgggttctttctctagccttcatcactccctccctgtaattaatcacagCTATTCCAAAAGTGCCAGTTAATAGAAAGGATACTTGAGGCCTGGGACACAAATGAGAAAAGACAgtaatcatagcctagcaagggactgcagaatgaactttatggtacactgc Alignment from Pairagon CTTTTTCAAAAGTGTCAGTTAATAGAGCGAATACTTGAAGCCTGGGACACAAATGAGAAGAAACA gtgggttctttctctagccttcatcactccctccctgtaattaatcacagCTATTCCAAAAGTGCCAGTTAATAGAAAGGATACTTGAGGCCTGGGACACAAATGAGAAAAGACAgtaatcatagcctagcaagggactgcagaatgaactttatggtacactgc Alignment from Exonerate_protein2genome CTTTTTCAAAAGTGTCAGTTAATAGAGCGAATACTTGAAGCCTGGGACACAAATGAGAAGAAACA gtgggttctttctctagccttcatcactccctccctgtaattaatcacagCTATTCCAAAAGTGCCAGTTAATAGAAAGGATACTTGAGGCCTGGGACACAAATGAGAAAAGACAgtaatcatagcctagcaagggactgcagaatgaactttatggtacactgc Alignment from Exonerate_coding2genome CTTTTTCAAAAGTGTCAGTTAATAGAGCGAATACTTGAAGCCTGGGACACAAATGAGAAGAAACA gtgggttctttctctagccttcatcactccctccctgtaattaatcacagCTATTCCAAAAGTGCCAGTTAATAGAAAGGATACTTGAGGCCTGGGACACAAATGAGAAAAGACAgtaatcatagcctagcaagggactgcagaatgaactttatggtacactgc Alignment from GeneWise CTTTTTCAAAAGTGTCAGTTAATAGAGCGAATACTTGAAGCCTGGGACACAAATGAGAAGAAACA gtgggttctttctctagccttcatcactccctccctgtaattaatcacagCTATTCCAAAAGTGCCAGTTAATAGAAAGGATACTTGAGGCCTGGGACACAAATGAGAAAAGACAgtaatcatagcctagcaagggactgcagaatgaactttatggtacactgc #### Ppp6r3_ID88_6 --> 1 - 2 Original Alignment gCAAGAAATTATTGAGCAGCTTCTGTCAAATATTTTTCACAAGGAGAAGAATGAATCGGCCATAGTCAGTGCAATTCAGATTTTGCTGACTTTGCTTGAGACTCGACGGCCAac tttatagcttgctttccaacggctatctactgtcttcttcctctctacaggCAAGAAATTATTGAGCAGCTTCTGTCAAATATTTTCCACAAGGAAAAGAATGAATCAGCCATCGTAAGTGCAATCCGGATTCTGCTGACGTTGCTTGAAACTCGTCGGCCAacgtaagtttccttaggacatagaaaccaaaatgctatctcatgggatggtt Alignment from CESAR gCAAGAAATTATTGAGCAGCTTCTGTCAAATATTTTTCACAAGGAGAAGAATGAATCGGCCATAGTCAGTGCAATTCAGATTTTGCTGACTTTGCTTGAGACTCGACGGCCAac tttatagcttgctttccaacggctatctactgtcttcttcctctctacaggCAAGAAATTATTGAGCAGCTTCTGTCAAATATTTTCCACAAGGAAAAGAATGAATCAGCCATCGTAAGTGCAATCCGGATTCTGCTGACGTTGCTTGAAACTCGTCGGCCAacgtaagtttccttaggacatagaaaccaaaatgctatctcatgggatggtt Alignment from Spaln_aa2Genome GCAAGAAATTATTGAGCAGCTTCTGTCAAATATTTTTCACAAGGAGAAGAATGAATCGGCCATAGTCAGTGCAATTCAGATTTTGCTGACTTTGCTTGAGACTCGACGGCCAAC tttatagcttgctttccaacggctatctactgtcttcttcctctctacagGCAAGAAATTATTGAGCAGCTTCTGTCAAATATTTTCCACAAGGAAAAGAATGAATCAGCCATCGTAAGTGCAATCCGGATTCTGCTGACGTTGCTTGAAACTCGTCGGCCAACgtaagtttccttaggacatagaaaccaaaatgctatctcatgggatggtt Alignment from Spaln_nt2Genome GCAAGAAATTATTGAGCAGCTTCTGTCAAATATTTTTCACAAGGAGAAGAATGAATCGGCCATAGTCAGTGCAATTCAGATTTTGCTGACTTTGCTTGAGACTCGACGGCCAAC tttatagcttgctttccaacggctatctactgtcttcttcctctctacagGCAAGAAATTATTGAGCAGCTTCTGTCAAATATTTTCCACAAGGAAAAGAATGAATCAGCCATCGTAAGTGCAATCCGGATTCTGCTGACGTTGCTTGAAACTCGTCGGCCAACgtaagtttccttaggacatagaaaccaaaatgctatctcatgggatggtt Alignment from Pairagon GCAAGAAATTATTGAGCAGCTTCTGTCAAATATTTTTCACAAGGAGAAGAATGAATCGGCCATAGTCAGTGCAATTCAGATTTTGCTGACTTTGCTTGAGACTCGACGGCCAAC tttatagcttgctttccaacggctatctactgtcttcttcctctctacagGCAAGAAATTATTGAGCAGCTTCTGTCAAATATTTTCCACAAGGAAAAGAATGAATCAGCCATCGTAAGTGCAATCCGGATTCTGCTGACGTTGCTTGAAACTCGTCGGCCAACgtaagtttccttaggacatagaaaccaaaatgctatctcatgggatggtt Alignment from Exonerate_protein2genome GCAAGAAATTATTGAGCAGCTTCTGTCAAATATTTTTCACAAGGAGAAGAATGAATCGGCCATAGTCAGTGCAATTCAGATTTTGCTGACTTTGCTTGAGACTCGACGGCCAAC tttatagcttgctttccaacggctatctactgtcttcttcctctctacagGCAAGAAATTATTGAGCAGCTTCTGTCAAATATTTTCCACAAGGAAAAGAATGAATCAGCCATCGTAAGTGCAATCCGGATTCTGCTGACGTTGCTTGAAACTCGTCGGCCAACgtaagtttccttaggacatagaaaccaaaatgctatctcatgggatggtt Alignment from Exonerate_coding2genome GCAAGAAATTATTGAGCAGCTTCTGTCAAATATTTTTCACAAGGAGAAGAATGAATCGGCCATAGTCAGTGCAATTCAGATTTTGCTGACTTTGCTTGAGACTCGACGGCCAAC tttatagcttgctttccaacggctatctactgtcttcttcctctctacagGCAAGAAATTATTGAGCAGCTTCTGTCAAATATTTTCCACAAGGAAAAGAATGAATCAGCCATCGTAAGTGCAATCCGGATTCTGCTGACGTTGCTTGAAACTCGTCGGCCAACgtaagtttccttaggacatagaaaccaaaatgctatctcatgggatggtt Alignment from GeneWise GCAAGAAATTATTGAGCAGCTTCTGTCAAATATTTTTCACAAGGAGAAGAATGAATCGGCCATAGTCAGTGCAATTCAGATTTTGCTGACTTTGCTTGAGACTCGACGGCCAAC tttatagcttgctttccaacggctatctactgtcttcttcctctctacagGCAAGAAATTATTGAGCAGCTTCTGTCAAATATTTTCCACAAGGAAAAGAATGAATCAGCCATCGTAAGTGCAATCCGGATTCTGCTGACGTTGCTTGAAACTCGTCGGCCAACgtaagtttccttaggacatagaaaccaaaatgctatctcatgggatggtt #### Prdx3_ID13363_4 --> 1 - 0 Original Alignment cACATTTGTGTGTCCTACAGAAATTGTTGCTTTCAGTGACAAAGCCAATGAATTTCATGATGTAAACTGTGAAGTAGTTGCAGTTTCAGTGGATTCCCACTTCAGTCATCTTGCCTGGATCAACACACCAAGAAAG gcagtgacctaaggtttgctatgcgccagtgactcttgcttcttatgcagtACATTTGTGCGCCCAACAGAGGTTGTAGCTTTTAGTGACAAAGCT---GAGTTCCATGATGTGAACTGTCAAGTGGTTACAGTTTCAGTTGACTCACACCTGAGTCACCTG---GGGATCACCACACCAAGAAAAgtgcgttaactatcacctgtacttattcctgtctgcttcactgatgtgta Alignment from CESAR cACATTTGTGTGTCCTACAGAAATTGTTGCTTTCAGTGACAAAGCCAATGAATTTCATGATGTAAACTGTGAAGTAGTTGCAGTTTCAGTGGATTCCCACTTCAGTCATCTTGCCTGGATCAACACACCAAGAAAG gcagtgacctaaggtttgctatgcgccagtgactcttgcttcttatgcagtACATTTGTGCGCCCAACAGAGGTTGTAGCTTTTAGTGACAAAGCT---GAGTTCCATGATGTGAACTGTCAAGTGGTTACAGTTTCAGTTGACTCACACCTGAGTCACCTGGGG---ATCACCACACCAAGAAAAgtgcgttaactatcacctgtacttattcctgtctgcttcactgatgtgta Alignment from Spaln_aa2Genome CACATTTGTGTGTCCTACAGAAATTGTTGCTTTCAGTGACAAAGCCAATGAATTTCATGATGTAAACTGTGAAGTAGTTGCAGTTTCAGTGGATTCCCACTTCAGTCATCTTGCCTGGATCAACACACCAAGAAAG gcagtgacctaaggtttgctatgcgccagtgactcttgcttcttatgcagTACATTTGTGCGCCCAACAGAGGTTGTAGCTTTTAGTGACAAAGCT---GAGTTCCATGATGTGAACTGTCAAGTGGTTACAGTTTCAGTTGACTCACACCTGAGTCACCTGGGG---ATCACCACACCAAGAAAAgtgcgttaactatcacctgtacttattcctgtctgcttcactgatgtgta Alignment from Spaln_nt2Genome CACATTTGTGTGTCCTACAGAAATTGTTGCTTTCAGTGACAAAGCCAATGAATTTCATGATGTAAACTGTGAAGTAGTTGCAGTTTCAGTGGATTCCCACTTCAGTCATCTTGCCTGGATCAACACACCAAGAAAG gcagtgacctaaggtttgctatgcgccagtgactcttgcttcttatgcagTACATTTGTGCGCCCAACAGAGGTTGTAGCTTTTAGTGACAAAGC---TGAGTTCCATGATGTGAACTGTCAAGTGGTTACAGTTTCAGTTGACTCACACCTGAGTCACCTGG---GGATCACCACACCAAGAAAAgtgcgttaactatcacctgtacttattcctgtctgcttcactgatgtgta Alignment from Pairagon CACATTTGTGTGTCCTACAGAAATTGTTGCTTTCAGTGACAAAGCCAATGAATTTCATGATGTAAACTGTGAAGTAGTTGCAGTTTCAGTGGATTCCCACTTCAGTCATCTTGCCTGGATCAACACACCAAGAAAG gcagtgacctaaggtttgctatgcgccagtgactcttgcttcttatgcagTACATTTGTGCGCCCAACAGAGGTTGTAGCTTTTAGTGACAAAGC---TGAGTTCCATGATGTGAACTGTCAAGTGGTTACAGTTTCAGTTGACTCACACCTGAGTCACCTGG---GGATCACCACACCAAGAAAAgtgcgttaactatcacctgtacttattcctgtctgcttcactgatgtgta Alignment from Exonerate_protein2genome CACATTTGTGTGTCCTACAGAAATTGTTGCTTTCAGTGACAAAGCCAATGAATTTCATGATGTAAACTGTGAAGTAGTTGCAGTTTCAGTGGATTCCCACTTCAGTCATCTTGCCTGGATCAACACACCAAGAAAG gcagtgacctaaggtttgctatgcgccagtgactcttgcttcttatgcagTACATTTGTGCGCCCAACAGAGGTTGTAGCTTTTAGTGACAAAGCT---GAGTTCCATGATGTGAACTGTCAAGTGGTTACAGTTTCAGTTGACTCACACCTGAGTCACCTGGGG---ATCACCACACCAAGAAAAgtgcgttaactatcacctgtacttattcctgtctgcttcactgatgtgta Alignment from Exonerate_coding2genome CACATTTGTGTGTCCTACAGAAATTGTTGCTTTCAGTGACAAAGCCAATGAATTTCATGATGTAAACTGTGAAGTAGTTGCAGTTTCAGTGGATTCCCACTTCAGTCATCTTGCCTGGATCAACACACCAAGAAAG gcagtgacctaaggtttgctatgcgccagtgactcttgcttcttatgcagTACATTTGTGCGCCCAACAGAGGTTGTAGCTTTTAGTGACAAAGCT---GAGTTCCATGATGTGAACTGTCAAGTGGTTACAGTTTCAGTTGACTCACACCTGAGTCACCTGGGG---ATCACCACACCAAGAAAAgtgcgttaactatcacctgtacttattcctgtctgcttcactgatgtgta Alignment from GeneWise CACATTTGTGTGTCCTACAGAAATTGTTGCTTTCAGTGACAAAGCCAATGAATTTCATGATGTAAACTGTGAAGTAGTTGCAGTTTCAGTGGATTCCCACTTCAGTCATCTTGCCTGGATCAACACACCAAGAAAG gcagtgacctaaggtttgctatgcgccagtgactcttgcttcttatgcagTACATTTGTGCGCCCAACAGAGGTTGTAGCTTTTAGTGACAAAGCT---GAGTTCCATGATGTGAACTGTCAAGTGGTTACAGTTTCAGTTGACTCACACCTGAGTCACCTGGGG---ATCACCACACCAAGAAAAgtgcgttaactatcacctgtacttattcctgtctgcttcactgatgtgta #### Prdx3_ID13365_2 --> 0 - 1 Original Alignment GTTGCTCGTCATGCAAGTGCTATTTCCCGGAGTATTTCTGCCTCAACAGTTCTTAGGCCTGTTGCTTCTAGAAGAACCTGTTTGACAGACATACTGTGGTCTGCCTCTGCCCAAGGAAAGTCAGCCTTTAGCACCa gtcctcctttagtaaatcattccttccttctccatccctgtgtgccctagGTTGCACGTCATGCAAGTGCCATATCCCGGGGTATTTCTGCCTCTACAGCCCTTAGGCCTGTTTCCTCTAGAAGGTCGTGTTTGACCGACATTCTG------GCTGCTGCTCAGGGAAAGTCAGCCTTCAGCCCTagtaagtatatctggccacatacttcagtcctcttctacacacgggaaatt Alignment from CESAR GTTGCTCGTCATGCAAGTGCTATTTCCCGGAGTATTTCTGCCTCAACAGTTCTTAGGCCTGTTGCTTCTAGAAGAACCTGTTTGACAGACATACTGTGGTCTGCCTCTGCCCAAGGAAAGTCAGCCTTTAGCACCa gtcctcctttagtaaatcattccttccttctccatccctgtgtgccctagGTTGCACGTCATGCAAGTGCCATATCCCGGGGTATTTCTGCCTCTACAGCCCTTAGGCCTGTTTCCTCTAGAAGGTCGTGTTTGACCGACATTCTG------GCTGCTGCTCAGGGAAAGTCAGCCTTCAGCCCTagtaagtatatctggccacatacttcagtcctcttctacacacgggaaatt Alignment from Spaln_aa2Genome GTTGCTCGTCATGCAAGTGCTATTTCCCGGAGTATTTCTGCCTCAACAGTTCTTAGGCCTGTTGCTTCTAGAAGAACCTGTTTGACAGACATACTGTGGTCTGCCTCTGCCCAAGGAAAGTCAGCCTTTAGCACCA gtcctcctttagtaaatcattccttccttctccatccctgtgtgccctagGTTGCACGTCATGCAAGTGCCATATCCCGGGGTATTTCTGCCTCTACAGCCCTTAGGCCTGTTTCCTCTAGAAGGTCGTGTTTGACCGACATTCTG------GCTGCTGCTCAGGGAAAGTCAGCCTTCAGCCCTAgtaagtatatctggccacatacttcagtcctcttctacacacgggaaatt Alignment from Spaln_nt2Genome GTTGCTCGTCATGCAAGTGCTATTTCCCGGAGTATTTCTGCCTCAACAGTTCTTAGGCCTGTTGCTTCTAGAAGAACCTGTTTGACAGACATACTGTGGTCTGCCTCTGCCCAAGGAAAGTCAGCCTTTAGCACCA gtcctcctttagtaaatcattccttccttctccatccctgtgtgccctagGTTGCACGTCATGCAAGTGCCATATCCCGGGGTATTTCTGCCTCTACAGCCCTTAGGCCTGTTTCCTCTAGAAGGTCGTGTTTGACCGACATTCTG------GCTGCTGCTCAGGGAAAGTCAGCCTTCAGCCCTAgtaagtatatctggccacatacttcagtcctcttctacacacgggaaatt Alignment from Pairagon GTTGCTCGTCATGCAAGTGCTATTTCCCGGAGTATTTCTGCCTCAACAGTTCTTAGGCCTGTTGCTTCTAGAAGAACCTGTTTGACAGACATACTGTGGTCTGCCTCTGCCCAAGGAAAGTCAGCCTTTAGCACCA gtcctcctttagtaaatcattccttccttctccatccctgtgtgccctagGTTGCACGTCATGCAAGTGCCATATCCCGGGGTATTTCTGCCTCTACAGCCCTTAGGCCTGTTTCCTCTAGAAGGTCGTGTTTGACCGACATTCTG------GCTGCTGCTCAGGGAAAGTCAGCCTTCAGCCCTAgtaagtatatctggccacatacttcagtcctcttctacacacgggaaatt Alignment from Exonerate_protein2genome GTTGCTCGTCATGCAAGTGCTATTTCCCGGAGTATTTCTGCCTCAACAGTTCTTAGGCCTGTTGCTTCTAGAAGAACCTGTTTGACAGACATACTGTGGTCTGCCTCTGCCCAAGGAAAGTCAGCCTTTAGCACCA gtcctcctttagtaaatcattccttccttctccatccctgtgtgccctagGTTGCACGTCATGCAAGTGCCATATCCCGGGGTATTTCTGCCTCTACAGCCCTTAGGCCTGTTTCCTCTAGAAGGTCGTGTTTGACCGACATTCTG------GCTGCTGCTCAGGGAAAGTCAGCCTTCAGCCCTAgtaagtatatctggccacatacttcagtcctcttctacacacgggaaatt Alignment from Exonerate_coding2genome GTTGCTCGTCATGCAAGTGCTATTTCCCGGAGTATTTCTGCCTCAACAGTTCTTAGGCCTGTTGCTTCTAGAAGAACCTGTTTGACAGACATACTGTGGTCTGCCTCTGCCCAAGGAAAGTCAGCCTTTAGCACCA gtcctcctttagtaaatcattccttccttctccatccctgtgtgccctagGTTGCACGTCATGCAAGTGCCATATCCCGGGGTATTTCTGCCTCTACAGCCCTTAGGCCTGTTTCCTCTAGAAGGTCGTGTTTGACCGACATTCTG------GCTGCTGCTCAGGGAAAGTCAGCCTTCAGCCCTAgtaagtatatctggccacatacttcagtcctcttctacacacgggaaatt Alignment from GeneWise GTTGCTCGTCATGCAAGTGCTATTTCCCGGAGTATTTCTGCCTCAACAGTTCTTAGGCCTGTTGCTTCTAGAAGAACCTGTTTGACAGACATACTGTGGTCTGCCTCTGCCCAAGGAAAGTCAGCCTTTAGCACCA gtcctcctttagtaaatcattccttccttctccatccctgtgtgccctagGTTGCACGTCATGCAAGTGCCATATCCCGGGGTATTTCTGCCTCTACAGCCCTTAGGCCTGTTTCCTCTAGAAGGTCGTGTTTGACCGACATTCTG------GCTGCTGCTCAGGGAAAGTCAGCCTTCAGCCCTAgtaagtatatctggccacatacttcagtcctcttctacacacgggaaatt #### Prkg1_ID6489_17 --> 1 - 0 Original Alignment gTGGTTTGAGGGCTTTAATTGGGAAGGCTTAAGAAAAGGCACCTTGACACCTCCCATAATTCCAAGT tagtccaagtttgcatattactttggcactgttcctctttcaccattcagaTGGTTTGAGGGCTTTAATTGGGAAGGCTCCAGGAAAGGTACTTTAACACCTCCTATTATACCAAGTgtgagaaaacttttgttgttgtctgtaagaggttgcctccacagacaatc Alignment from CESAR gTGGTTTGAGGGCTTTAATTGGGAAGGCTTAAGAAAAGGCACCTTGACACCTCCCATAATTCCAAGT tagtccaagtttgcatattactttggcactgttcctctttcaccattcagaTGGTTTGAGGGCTTTAATTGGGAAGGCTCCAGGAAAGGTACTTTAACACCTCCTATTATACCAAGTgtgagaaaacttttgttgttgtctgtaagaggttgcctccacagacaatc Alignment from Spaln_aa2Genome GTGGTTTGAGGGCTTTAATTGGGAAGGCTTAAGAAAAGGCACCTTGACACCTCCCATAATTCCAAGT tagtccaagtttgcatattactttggcactgttcctctttcaccattcagATGGTTTGAGGGCTTTAATTGGGAAGGCTCCAGGAAAGGTACTTTAACACCTCCTATTATACCAAGTgtgagaaaacttttgttgttgtctgtaagaggttgcctccacagacaatc Alignment from Spaln_nt2Genome GTGGTTTGAGGGCTTTAATTGGGAAGGCTTAAGAAAAGGCACCTTGACACCTCCCATAATTCCAAGT tagtccaagtttgcatattactttggcactgttcctctttcaccattcagATGGTTTGAGGGCTTTAATTGGGAAGGCTCCAGGAAAGGTACTTTAACACCTCCTATTATACCAAGTgtgagaaaacttttgttgttgtctgtaagaggttgcctccacagacaatc Alignment from Pairagon GTGGTTTGAGGGCTTTAATTGGGAAGGCTTAAGAAAAGGCACCTTGACACCTCCCATAATTCCAAGT tagtccaagtttgcatattactttggcactgttcctctttcaccattcagATGGTTTGAGGGCTTTAATTGGGAAGGCTCCAGGAAAGGTACTTTAACACCTCCTATTATACCAAGTgtgagaaaacttttgttgttgtctgtaagaggttgcctccacagacaatc Alignment from Exonerate_protein2genome GTGGTTTGAGGGCTTTAATTGGGAAGGCTTAAGAAAAGGCACCTTGACACCTCCCATAATTCCAAGT tagtccaagtttgcatattactttggcactgttcctctttcaccattcagATGGTTTGAGGGCTTTAATTGGGAAGGCTCCAGGAAAGGTACTTTAACACCTCCTATTATACCAAGTgtgagaaaacttttgttgttgtctgtaagaggttgcctccacagacaatc Alignment from Exonerate_coding2genome GTGGTTTGAGGGCTTTAATTGGGAAGGCTTAAGAAAAGGCACCTTGACACCTCCCATAATTCCAAGT tagtccaagtttgcatattactttggcactgttcctctttcaccattcagATGGTTTGAGGGCTTTAATTGGGAAGGCTCCAGGAAAGGTACTTTAACACCTCCTATTATACCAAGTgtgagaaaacttttgttgttgtctgtaagaggttgcctccacagacaatc Alignment from GeneWise GTGGTTTGAGGGCTTTAATTGGGAAGGCTTAAGAAAAGGCACCTTGACACCTCCCATAATTCCAAGT tagtccaagtttgcatattactttggcactgttcctctttcaccattcagATGGTTTGAGGGCTTTAATTGGGAAGGCTCCAGGAAAGGTACTTTAACACCTCCTATTATACCAAGTgtgagaaaacttttgttgttgtctgtaagaggttgcctccacagacaatc #### Prkg1_ID6490_16 --> 1 - 2 Original Alignment gGACAACCCATCAGAGAGGTTAGGAAATTTGAAAAACGGAGTCAAAGACATTCAGAAACACaa agcttgcaaggacacacgccctctttaagtggtctgatttttccccccaggGATAACCCATCAGAGAGGTTAGGAAATTTGAAAAATGGGGTTAAAGACATTCAGAAACACaagtgagtgttttcccttttacataactcaccatttgggatctaatgtcata Alignment from CESAR gGACAACCCATCAGAGAGGTTAGGAAATTTGAAAAACGGAGTCAAAGACATTCAGAAACACaa agcttgcaaggacacacgccctctttaagtggtctgatttttccccccaggGATAACCCATCAGAGAGGTTAGGAAATTTGAAAAATGGGGTTAAAGACATTCAGAAACACaagtgagtgttttcccttttacataactcaccatttgggatctaatgtcata Alignment from Spaln_aa2Genome GGACAACCCATCAGAGAGGTTAGGAAATTTGAAAAACGGAGTCAAAGACATTCAGAAACACAA agcttgcaaggacacacgccctctttaagtggtctgatttttccccccagGGATAACCCATCAGAGAGGTTAGGAAATTTGAAAAATGGGGTTAAAGACATTCAGAAACACAAgtgagtgttttcccttttacataactcaccatttgggatctaatgtcata Alignment from Spaln_nt2Genome GGACAACCCATCAGAGAGGTTAGGAAATTTGAAAAACGGAGTCAAAGACATTCAGAAACACAA agcttgcaaggacacacgccctctttaagtggtctgatttttccccccagGGATAACCCATCAGAGAGGTTAGGAAATTTGAAAAATGGGGTTAAAGACATTCAGAAACACAAgtgagtgttttcccttttacataactcaccatttgggatctaatgtcata Alignment from Pairagon GGACAACCCATCAGAGAGGTTAGGAAATTTGAAAAACGGAGTCAAAGACATTCAGAAACACAA agcttgcaaggacacacgccctctttaagtggtctgatttttccccccagGGATAACCCATCAGAGAGGTTAGGAAATTTGAAAAATGGGGTTAAAGACATTCAGAAACACAAgtgagtgttttcccttttacataactcaccatttgggatctaatgtcata Alignment from Exonerate_protein2genome GGACAACCCATCAGAGAGGTTAGGAAATTTGAAAAACGGAGTCAAAGACATTCAGAAACACAA agcttgcaaggacacacgccctctttaagtggtctgatttttccccccagGGATAACCCATCAGAGAGGTTAGGAAATTTGAAAAATGGGGTTAAAGACATTCAGAAACACAAgtgagtgttttcccttttacataactcaccatttgggatctaatgtcata Alignment from Exonerate_coding2genome GGACAACCCATCAGAGAGGTTAGGAAATTTGAAAAACGGAGTCAAAGACATTCAGAAACACAA agcttgcaaggacacacgccctctttaagtggtctgatttttccccccagGGATAACCCATCAGAGAGGTTAGGAAATTTGAAAAATGGGGTTAAAGACATTCAGAAACACAAgtgagtgttttcccttttacataactcaccatttgggatctaatgtcata Alignment from GeneWise GGACAACCCATCAGAGAGGTTAGGAAATTTGAAAAACGGAGTCAAAGACATTCAGAAACACAA agcttgcaaggacacacgccctctttaagtggtctgatttttccccccagGGATAACCCATCAGAGAGGTTAGGAAATTTGAAAAATGGGGTTAAAGACATTCAGAAACACAAgtgagtgttttcccttttacataactcaccatttgggatctaatgtcata #### Prkg1_ID6507_9 --> 1 - 2 Original Alignment cTCTTTCAAGCATTTGATTGGAGGACTGGACGATGTTTCTAACAAAGCATATGAGGACGCAGAAGCAAAAGCAaa gctcctaatcattttatagtctaaaatgttcagctcccatatctccacagaTCTTTCAAGCACTTAATTGGAGGATTGGATGATGTTTCAAACAAAGCGTATGAGGATGCAGAAGCAAAAGCAaagtgagtggaacatttttaggattttcatctgatctatgcactggtagcaa Alignment from CESAR cTCTTTCAAGCATTTGATTGGAGGACTGGACGATGTTTCTAACAAAGCATATGAGGACGCAGAAGCAAAAGCAaa gctcctaatcattttatagtctaaaatgttcagctcccatatctccacagaTCTTTCAAGCACTTAATTGGAGGATTGGATGATGTTTCAAACAAAGCGTATGAGGATGCAGAAGCAAAAGCAaagtgagtggaacatttttaggattttcatctgatctatgcactggtagcaa Alignment from Spaln_aa2Genome CTCTTTCAAGCATTTGATTGGAGGACTGGACGATGTTTCTAACAAAGCATATGAGGACGCAGAAGCAAAAGCAAA gctcctaatcattttatagtctaaaatgttcagctcccatatctccacagATCTTTCAAGCACTTAATTGGAGGATTGGATGATGTTTCAAACAAAGCGTATGAGGATGCAGAAGCAAAAGCAAAgtgagtggaacatttttaggattttcatctgatctatgcactggtagcaa Alignment from Spaln_nt2Genome CTCTTTCAAGCATTTGATTGGAGGACTGGACGATGTTTCTAACAAAGCATATGAGGACGCAGAAGCAAAAGCAAA gctcctaatcattttatagtctaaaatgttcagctcccatatctccacagATCTTTCAAGCACTTAATTGGAGGATTGGATGATGTTTCAAACAAAGCGTATGAGGATGCAGAAGCAAAAGCAAAgtgagtggaacatttttaggattttcatctgatctatgcactggtagcaa Alignment from Pairagon CTCTTTCAAGCATTTGATTGGAGGACTGGACGATGTTTCTAACAAAGCATATGAGGACGCAGAAGCAAAAGCAAA gctcctaatcattttatagtctaaaatgttcagctcccatatctccacagATCTTTCAAGCACTTAATTGGAGGATTGGATGATGTTTCAAACAAAGCGTATGAGGATGCAGAAGCAAAAGCAAAgtgagtggaacatttttaggattttcatctgatctatgcactggtagcaa Alignment from Exonerate_protein2genome CTCTTTCAAGCATTTGATTGGAGGACTGGACGATGTTTCTAACAAAGCATATGAGGACGCAGAAGCAAAAGCAAA gctcctaatcattttatagtctaaaatgttcagctcccatatctccacagATCTTTCAAGCACTTAATTGGAGGATTGGATGATGTTTCAAACAAAGCGTATGAGGATGCAGAAGCAAAAGCAAAgtgagtggaacatttttaggattttcatctgatctatgcactggtagcaa Alignment from Exonerate_coding2genome CTCTTTCAAGCATTTGATTGGAGGACTGGACGATGTTTCTAACAAAGCATATGAGGACGCAGAAGCAAAAGCAAA gctcctaatcattttatagtctaaaatgttcagctcccatatctccacagATCTTTCAAGCACTTAATTGGAGGATTGGATGATGTTTCAAACAAAGCGTATGAGGATGCAGAAGCAAAAGCAAAgtgagtggaacatttttaggattttcatctgatctatgcactggtagcaa Alignment from GeneWise CTCTTTCAAGCATTTGATTGGAGGACTGGACGATGTTTCTAACAAAGCATATGAGGACGCAGAAGCAAAAGCAAA gctcctaatcattttatagtctaaaatgttcagctcccatatctccacagATCTTTCAAGCACTTAATTGGAGGATTGGATGATGTTTCAAACAAAGCGTATGAGGATGCAGAAGCAAAAGCAAAgtgagtggaacatttttaggattttcatctgatctatgcactggtagcaa #### Prkg1_ID6524_5 --> 1 - 0 Original Alignment tGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAG ttgcctgtgcatgagtcttgtgtccattagtatctctttccaatccccagtGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGTAAGCTGGCTGATGTCCTTGAAGAGgtaagtgttttaatgatatataatgatgtttactcttatgtcatatctca Alignment from CESAR tGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAG ttgcctgtgcatgagtcttgtgtccattagtatctctttccaatccccagtGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGTAAGCTGGCTGATGTCCTTGAAGAGgtaagtgttttaatgatatataatgatgtttactcttatgtcatatctca Alignment from Spaln_aa2Genome TGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAG ttgcctgtgcatgagtcttgtgtccattagtatctctttccaatccccagTGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGTAAGCTGGCTGATGTCCTTGAAGAGgtaagtgttttaatgatatataatgatgtttactcttatgtcatatctca Alignment from Spaln_nt2Genome TGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAG ttgcctgtgcatgagtcttgtgtccattagtatctctttccaatccccagTGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGTAAGCTGGCTGATGTCCTTGAAGAGgtaagtgttttaatgatatataatgatgtttactcttatgtcatatctca Alignment from Pairagon TGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAG ttgcctgtgcatgagtcttgtgtccattagtatctctttccaatccccagTGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGTAAGCTGGCTGATGTCCTTGAAGAGgtaagtgttttaatgatatataatgatgtttactcttatgtcatatctca Alignment from Exonerate_protein2genome TGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAG ttgcctgtgcatgagtcttgtgtccattagtatctctttccaatccccagTGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGTAAGCTGGCTGATGTCCTTGAAGAGgtaagtgttttaatgatatataatgatgtttactcttatgtcatatctca Alignment from Exonerate_coding2genome TGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAG ttgcctgtgcatgagtcttgtgtccattagtatctctttccaatccccagTGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGTAAGCTGGCTGATGTCCTTGAAGAGgtaagtgttttaatgatatataatgatgtttactcttatgtcatatctca Alignment from GeneWise TGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGCAAGCTGGCTGATGTCCTCGAAGAG ttgcctgtgcatgagtcttgtgtccattagtatctctttccaatccccagTGTTCCAACATTCCAGAGCCTTCCTGATGAAATCCTCAGTAAGCTGGCTGATGTCCTTGAAGAGgtaagtgttttaatgatatataatgatgtttactcttatgtcatatctca #### Prkg1_ID6530_4 --> 2 - 2 Original Alignment ctCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAag aagtgagtgtatttattttccatccttgtcctttcttctctctctggcagctCTTGTAAATGTGAAGCTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACTGAGTATATGGAATTTTTAAAAaggtgagtcattttgtaggacttgtctcattcctttgtgatcttggggcctc Alignment from CESAR ctCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAag aagtgagtgtatttattttccatccttgtcctttcttctctctctggcagctCTTGTAAATGTGAAGCTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACTGAGTATATGGAATTTTTAAAAaggtgagtcattttgtaggacttgtctcattcctttgtgatcttggggcctc Alignment from Spaln_aa2Genome CTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAAG aagtgagtgtatttattttccatccttgtcctttcttctctctctggcagCTCTTGTAAATGTGAAGCTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACTGAGTATATGGAATTTTTAAAAAGgtgagtcattttgtaggacttgtctcattcctttgtgatcttggggcctc Alignment from Spaln_nt2Genome CTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAAG aagtgagtgtatttattttccatccttgtcctttcttctctctctggcagCTCTTGTAAATGTGAAGCTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACTGAGTATATGGAATTTTTAAAAAGgtgagtcattttgtaggacttgtctcattcctttgtgatcttggggcctc Alignment from Pairagon CTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAAG aagtgagtgtatttattttccatccttgtcctttcttctctctctggcagCTCTTGTAAATGTGAAGCTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACTGAGTATATGGAATTTTTAAAAAGgtgagtcattttgtaggacttgtctcattcctttgtgatcttggggcctc Alignment from Exonerate_protein2genome CTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAAG aagtgagtgtatttattttccatccttgtcctttcttctctctctggcagCTCTTGTAAATGTGAAGCTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACTGAGTATATGGAATTTTTAAAAAGgtgagtcattttgtaggacttgtctcattcctttgtgatcttggggcctc Alignment from Exonerate_coding2genome CTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAAG aagtgagtgtatttattttccatccttgtcctttcttctctctctggcagCTCTTGTAAATGTGAAGCTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACTGAGTATATGGAATTTTTAAAAAGgtgagtcattttgtaggacttgtctcattcctttgtgatcttggggcctc Alignment from GeneWise CTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAAG aagtgagtgtatttattttccatccttgtcctttcttctctctctggcagCTCTTGTAAATGTGAAGCTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACTGAGTATATGGAATTTTTAAAAAGgtgagtcattttgtaggacttgtctcattcctttgtgatcttggggcctc #### Prkg1_ID6589_2 --> 1 - 1 Original Alignment gTCGAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTGGACTGTATGTACCCCGTGGAATACGGCAAGGACAGCTGCATCATCAAGGAAGGCGATGTGGGGTCACTGGTGTACGTCATGGAAg tctcaacttttgtaaaccacaagaaggcttactgcactttctttttacaggTCAAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTACATGAAGAACTTAGAACTGTCACAGATCCAGGAGATTGTTGATTGTATGTACCCTGTGGAATACGGCAAGGACAGCTGCATCATAAAGGAAGGTGATGTAGGGTCACTAGTGTATGTTATGGAAggtgagtcttatatagtgtttctccagttacatataccttcttgcgaactt Alignment from CESAR gTCGAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTGGACTGTATGTACCCCGTGGAATACGGCAAGGACAGCTGCATCATCAAGGAAGGCGATGTGGGGTCACTGGTGTACGTCATGGAAg tctcaacttttgtaaaccacaagaaggcttactgcactttctttttacaggTCAAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTACATGAAGAACTTAGAACTGTCACAGATCCAGGAGATTGTTGATTGTATGTACCCTGTGGAATACGGCAAGGACAGCTGCATCATAAAGGAAGGTGATGTAGGGTCACTAGTGTATGTTATGGAAggtgagtcttatatagtgtttctccagttacatataccttcttgcgaactt Alignment from Spaln_aa2Genome GTCGAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTGGACTGTATGTACCCCGTGGAATACGGCAAGGACAGCTGCATCATCAAGGAAGGCGATGTGGGGTCACTGGTGTACGTCATGGAAG tctcaacttttgtaaaccacaagaaggcttactgcactttctttttacagGTCAAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTACATGAAGAACTTAGAACTGTCACAGATCCAGGAGATTGTTGATTGTATGTACCCTGTGGAATACGGCAAGGACAGCTGCATCATAAAGGAAGGTGATGTAGGGTCACTAGTGTATGTTATGGAAGgtgagtcttatatagtgtttctccagttacatataccttcttgcgaactt Alignment from Spaln_nt2Genome GTCGAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTGGACTGTATGTACCCCGTGGAATACGGCAAGGACAGCTGCATCATCAAGGAAGGCGATGTGGGGTCACTGGTGTACGTCATGGAAG tctcaacttttgtaaaccacaagaaggcttactgcactttctttttacagGTCAAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTACATGAAGAACTTAGAACTGTCACAGATCCAGGAGATTGTTGATTGTATGTACCCTGTGGAATACGGCAAGGACAGCTGCATCATAAAGGAAGGTGATGTAGGGTCACTAGTGTATGTTATGGAAGgtgagtcttatatagtgtttctccagttacatataccttcttgcgaactt Alignment from Pairagon GTCGAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTGGACTGTATGTACCCCGTGGAATACGGCAAGGACAGCTGCATCATCAAGGAAGGCGATGTGGGGTCACTGGTGTACGTCATGGAAG tctcaacttttgtaaaccacaagaaggcttactgcactttctttttacagGTCAAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTACATGAAGAACTTAGAACTGTCACAGATCCAGGAGATTGTTGATTGTATGTACCCTGTGGAATACGGCAAGGACAGCTGCATCATAAAGGAAGGTGATGTAGGGTCACTAGTGTATGTTATGGAAGgtgagtcttatatagtgtttctccagttacatataccttcttgcgaactt Alignment from Exonerate_protein2genome GTCGAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTGGACTGTATGTACCCCGTGGAATACGGCAAGGACAGCTGCATCATCAAGGAAGGCGATGTGGGGTCACTGGTGTACGTCATGGAAG tctcaacttttgtaaaccacaagaaggcttactgcactttctttttacagGTCAAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTACATGAAGAACTTAGAACTGTCACAGATCCAGGAGATTGTTGATTGTATGTACCCTGTGGAATACGGCAAGGACAGCTGCATCATAAAGGAAGGTGATGTAGGGTCACTAGTGTATGTTATGGAAGgtgagtcttatatagtgtttctccagttacatataccttcttgcgaactt Alignment from Exonerate_coding2genome GTCGAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTGGACTGTATGTACCCCGTGGAATACGGCAAGGACAGCTGCATCATCAAGGAAGGCGATGTGGGGTCACTGGTGTACGTCATGGAAG tctcaacttttgtaaaccacaagaaggcttactgcactttctttttacagGTCAAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTACATGAAGAACTTAGAACTGTCACAGATCCAGGAGATTGTTGATTGTATGTACCCTGTGGAATACGGCAAGGACAGCTGCATCATAAAGGAAGGTGATGTAGGGTCACTAGTGTATGTTATGGAAGgtgagtcttatatagtgtttctccagttacatataccttcttgcgaactt Alignment from GeneWise GTCGAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTTCATGAAGAACTTGGAGCTGTCACAGATCCAGGAGATTGTGGACTGTATGTACCCCGTGGAATACGGCAAGGACAGCTGCATCATCAAGGAAGGCGATGTGGGGTCACTGGTGTACGTCATGGAAG tctcaacttttgtaaaccacaagaaggcttactgcactttctttttacagGTCAAAGGATCTCATAAAGGAGGCTATCCTTGACAATGACTACATGAAGAACTTAGAACTGTCACAGATCCAGGAGATTGTTGATTGTATGTACCCTGTGGAATACGGCAAGGACAGCTGCATCATAAAGGAAGGTGATGTAGGGTCACTAGTGTATGTTATGGAAGgtgagtcttatatagtgtttctccagttacatataccttcttgcgaactt #### Prpf19_ID3046_5 --> 2 - 0 Original Alignment CTCGAGAAg ctCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG CTCGAGAAggtgagtctcattccactgtttatgtttaacttctgttttagccTTGGCCACCCTAAAACCACAAGCTGGCCTGATAGTACCTCAAGCTGTGCCAAGCTCACCACCCAGTGTAATAgtaagatgtgcgcccttagcaccccactagcaaatagtacctcatgagag Alignment from CESAR CTCGAGAAg ctCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG CTCGAGAAggtaagtctcattccactgtttatgtttaacttctgttttagccTTGGCCACCCTAAAACCACAAGCTGGCCTGATAGTACCTCAAGCTGTGCCAAGCTCACCACCCAGTGTAATAgtaagatgtgcgcccttagcaccccactagcaaatagtacctcatgagag Alignment from Spaln_aa2Genome CTCGAGAAG CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG CTCGAGAAGgtgagtctcattccactgtttatgtttaacttctgttttagCCTTGGCCACCCTAAAACCACAAGCTGGCCTGATAGTACCTCAAGCTGTGCCAAGCTCACCACCCAGTGTAATAgtaagatgtgcgcccttagcaccccactagcaaatagtacctcatgagag Alignment from Spaln_nt2Genome CTCGAGAAG CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG CTCGAGAAGgtgagtctcattccactgtttatgtttaacttctgttttagCCTTGGCCACCCTAAAACCACAAGCTGGCCTGATAGTACCTCAAGCTGTGCCAAGCTCACCACCCAGTGTAATAgtaagatgtgcgcccttagcaccccactagcaaatagtacctcatgagag Alignment from Pairagon CTCGAGAAG CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG CTCGAGAAGgtgagtctcattccactgtttatgtttaacttctgttttagCCTTGGCCACCCTAAAACCACAAGCTGGCCTGATAGTACCTCAAGCTGTGCCAAGCTCACCACCCAGTGTAATAgtaagatgtgcgcccttagcaccccactagcaaatagtacctcatgagag Alignment from Exonerate_protein2genome CTCGAGAAG CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG CTCGAGAAGgtgagtctcattccactgtttatgtttaacttctgttttagCCTTGGCCACCCTAAAACCACAAGCTGGCCTGATAGTACCTCAAGCTGTGCCAAGCTCACCACCCAGTGTAATAgtaagatgtgcgcccttagcaccccactagcaaatagtacctcatgagag Alignment from Exonerate_coding2genome CTCGAGAAG CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG CTCGAGAAGgtgagtctcattccactgtttatgtttaacttctgttttagCCTTGGCCACCCTAAAACCACAAGCTGGCCTGATAGTACCTCAAGCTGTGCCAAGCTCACCACCCAGTGTAATAgtaagatgtgcgcccttagcaccccactagcaaatagtacctcatgagag Alignment from GeneWise CTCGAGAAG CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG CTCGAGAAGgtgagtctcattccactgtttatgtttaacttctgttttagCCTTGGCCACCCTAAAACCACAAGCTGGCCTGATAGTACCTCAAGCTGTGCCAAGCTCACCACCCAGTGTAATAgtaagatgtgcgcccttagcaccccactagcaaatagtacctcatgagag #### Prpf19_ID3048_7 --> 0 - 0 Original Alignment CTTCAAGACAAGGCTACTGTGCTAACCACGGAG------CGTAAGAAG aaataaccaattagtgatgcccacttcacatttcatctgatgccccgcagCTTCAAGACAAGGCCACTGTGTTAACCACAGACACAGGACAAAAGAAAgtgagtctggcctatgtggaaatctgcatctttagtgtgaagtgtgtgca Alignment from CESAR CTTCAAGACAAGGCTACTGTGCTAACCACGGAG------CGTAAGAAG aaataaccaattagtgatgcccacttcacatttcatctgatgccccgcagCTTCAAGACAAGGCCACTGTGTTAACCACAGACACAGGACAAAAGAAAgtgagtctggcctatgtggaaatctgcatctttagtgtgaagtgtgtgca Alignment from Spaln_aa2Genome CTTCAAGACAAGGCTACTGTGCTAACCACGGAG------CGTAAGAAG aaataaccaattagtgatgcccacttcacatttcatctgatgccccgcagCTTCAAGACAAGGCCACTGTGTTAACCACAGACACAGGACAAAAGAAAgtgagtctggcctatgtggaaatctgcatctttagtgtgaagtgtgtgca Alignment from Spaln_nt2Genome CTTCAAGACAAGGCTACTGTGCTAACCACGGAG------CGTAAGAAG aaataaccaattagtgatgcccacttcacatttcatctgatgccccgcagCTTCAAGACAAGGCCACTGTGTTAACCACAGACACAGGACAAAAGAAAgtgagtctggcctatgtggaaatctgcatctttagtgtgaagtgtgtgca Alignment from Pairagon CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGA------------------------------------------------------------------ aaataaccaattagtgatgcccacttcacatttcatctgatgccccgcagCTTCAAGACAAGGCCACTGTGTTAACCAC--------AGACACAGGACAAAAGAAAGTGAGTCTGGCCTATGTGGAAATCTGCATCTTTAGTGTGAAGTGTGTGCA Alignment from Exonerate_protein2genome CTTCAAGACAAGGCTACTGTGCTAACCACGGAG------CGTAAGAAG aaataaccaattagtgatgcccacttcacatttcatctgatgccccgcagCTTCAAGACAAGGCCACTGTGTTAACCACAGACACAGGACAAAAGAAAgtgagtctggcctatgtggaaatctgcatctttagtgtgaagtgtgtgca Alignment from Exonerate_coding2genome CTTCAAGACAAGGCTACTGTGCTAACCACGGAG------CGTAAGAAG aaataaccaattagtgatgcccacttcacatttcatctgatgccccgcagCTTCAAGACAAGGCCACTGTGTTAACCACAGACACAGGACAAAAGAAAgtgagtctggcctatgtggaaatctgcatctttagtgtgaagtgtgtgca Alignment from GeneWise CTTCAAGACAAGGCTACTGTGCTAACCACGGAG------CGTAAGAAG aaataaccaattagtgatgcccacttcacatttcatctgatgccccgcagCTTCAAGACAAGGCCACTGTGTTAACCACAGACACAGGACAAAAGAAAgtgagtctggcctatgtggaaatctgcatctttagtgtgaagtgtgtgca #### Prpf19_ID3051_10 --> 2 - 0 Original Alignment gtGGGGCAGATAAAAATGTTGTTGTCTTTGATAAGAGTACTGAGCAAATATTGGCCACTCTCAAAGGCCATACCAAGAAGGTCACCAGTGTGGTGTTTCATCCTTCTCAG ttttgtctccctatgagctgatctggcaatttttattcttccttttttaggtGGGGCAGCTAAAAATGTTGTTATCTTTGATGAGAGTACTGAACAGATCCTAGCCACTCTCAAAGGTCACACTAAGAAGGTGAGTAGTGCAGTAATTTATCCCTCACAGgtgagtcactatttaggtgatatactatttaagttactctgtggaatcta Alignment from CESAR gtGGGGCAGATAAAAATGTTGTTGTCTTTGATAAGAGTACTGAGCAAATATTGGCCACTCTCAAAGGCCATACCAAGAAGGTCACCAGTGTGGTGTTTCATCCTTCTCAG ttttgtctccctatgagctgatctggcaatttttattcttccttttttaggtGGGGCAGCTAAAAATGTTGTTATCTTTGATGAGAGTACTGAACAGATCCTAGCCACTCTCAAAGGTCACACTAAGAAGGTGAGTAGTGCAGTAATTTATCCCTCACAGgtgagtcactatttaggtgatatactatttaagttactctgtggaatcta Alignment from Spaln_aa2Genome GTGGGGCAGATAAAAATGTTGTTGTCTTTGATAAGAGTACTGAGCAAATATTGGCCACTCTCAAAGGCCATACCAAGAAGGTCACCAGTGTGGTGTTTCATCCTTCTCAG ttttgtctccctatgagctgatctggcaatttttattcttccttttttagGTGGGGCAGCTAAAAATGTTGTTATCTTTGATGAGAGTACTGAACAGATCCTAGCCACTCTCAAAGGTCACACTAAGAAGGTGAGTAGTGCAGTAATTTATCCCTCACAGgtgagtcactatttaggtgatatactatttaagttactctgtggaatcta Alignment from Spaln_nt2Genome GTGGGGCAGATAAAAATGTTGTTGTCTTTGATAAGAGTACTGAGCAAATATTGGCCACTCTCAAAGGCCATACCAAGAAGGTCACCAGTGTGGTGTTTCATCCTTCTCAG ttttgtctccctatgagctgatctggcaatttttattcttccttttttagGTGGGGCAGCTAAAAATGTTGTTATCTTTGATGAGAGTACTGAACAGATCCTAGCCACTCTCAAAGGTCACACTAAGAAGGTGAGTAGTGCAGTAATTTATCCCTCACAGgtgagtcactatttaggtgatatactatttaagttactctgtggaatcta Alignment from Pairagon GTGGGGCAGATAAAAATGTTGTTGTCTTTGATAAGAGTACTGAGCAAATATTGGCCACTCTCAAAGGCCATACCAAGAAGGTCACCAGTGTGGTGTTTCATCCTTCTCAG ttttgtctccctatgagctgatctggcaatttttattcttccttttttagGTGGGGCAGCTAAAAATGTTGTTATCTTTGATGAGAGTACTGAACAGATCCTAGCCACTCTCAAAGGTCACACTAAGAAGGTGAGTAGTGCAGTAATTTATCCCTCACAGgtgagtcactatttaggtgatatactatttaagttactctgtggaatcta Alignment from Exonerate_protein2genome GTGGGGCAGATAAAAATGTTGTTGTCTTTGATAAGAGTACTGAGCAAATATTGGCCACTCTCAAAGGCCATACCAAGAAGGTCACCAGTGTGGTGTTTCATCCTTCTCAG ttttgtctccctatgagctgatctggcaatttttattcttccttttttagGTGGGGCAGCTAAAAATGTTGTTATCTTTGATGAGAGTACTGAACAGATCCTAGCCACTCTCAAAGGTCACACTAAGAAGGTGAGTAGTGCAGTAATTTATCCCTCACAGgtgagtcactatttaggtgatatactatttaagttactctgtggaatcta Alignment from Exonerate_coding2genome GTGGGGCAGATAAAAATGTTGTTGTCTTTGATAAGAGTACTGAGCAAATATTGGCCACTCTCAAAGGCCATACCAAGAAGGTCACCAGTGTGGTGTTTCATCCTTCTCAG ttttgtctccctatgagctgatctggcaatttttattcttccttttttagGTGGGGCAGCTAAAAATGTTGTTATCTTTGATGAGAGTACTGAACAGATCCTAGCCACTCTCAAAGGTCACACTAAGAAGGTGAGTAGTGCAGTAATTTATCCCTCACAGgtgagtcactatttaggtgatatactatttaagttactctgtggaatcta Alignment from GeneWise GTGGGGCAGATAAAAATGTTGTTGTCTTTGATAAGAGTACTGAGCAAATATTGGCCACTCTCAAAGGCCATACCAAGAAGGTCACCAGTGTGGTGTTTCATCCTTCTCAG ttttgtctccctatgagctgatctggcaatttttattcttccttttttagGTGGGGCAGCTAAAAATGTTGTTATCTTTGATGAGAGTACTGAACAGATCCTAGCCACTCTCAAAGGTCACACTAAGAAGGTGAGTAGTGCAGTAATTTATCCCTCACAGgtgagtcactatttaggtgatatactatttaagttactctgtggaatcta #### Prpf19_ID3054_13 --> 2 - 0 Original Alignment ctCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG aaaaatatgatcctacatgattagcaaggcatctgccttgtctctttcagccCTTACCTGTGCACAGTTCCACCCTGATGGGCTTACCTTTGGAAGTGGGACTATGGACTCCCAAATTAGAATTTGGGACCTCAAGgtagggggatatagacatgaacaaagggaggtagtggtggggaattgatc Alignment from CESAR ctCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG aaaaatatgatcctacatgattagcaaggcatctgccttgtctctttcagccCTTACCTGTGCACAGTTCCACCCTGATGGGCTTACCTTTGGAAGTGGGACTATGGACTCCCAAATTAGAATTTGGGACCTCAAGgtagggggatatagacatgaacaaagggaggtagtggtggggaattgatc Alignment from Spaln_aa2Genome CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG aaaaatatgatcctacatgattagcaaggcatctgccttgtctctttcagCCCTTACCTGTGCACAGTTCCACCCTGATGGGCTTACCTTTGGAAGTGGGACTATGGACTCCCAAATTAGAATTTGGGACCTCAAGgtagggggatatagacatgaacaaagggaggtagtggtggggaattgatc Alignment from Spaln_nt2Genome CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG aaaaatatgatcctacatgattagcaaggcatctgccttgtctctttcagCCCTTACCTGTGCACAGTTCCACCCTGATGGGCTTACCTTTGGAAGTGGGACTATGGACTCCCAAATTAGAATTTGGGACCTCAAGgtagggggatatagacatgaacaaagggaggtagtggtggggaattgatc Alignment from Pairagon CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG aaaaatatgatcctacatgattagcaaggcatctgccttgtctctttcagCCCTTACCTGTGCACAGTTCCACCCTGATGGGCTTACCTTTGGAAGTGGGACTATGGACTCCCAAATTAGAATTTGGGACCTCAAGgtagggggatatagacatgaacaaagggaggtagtggtggggaattgatc Alignment from Exonerate_protein2genome CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG aaaaatatgatcctacatgattagcaaggcatctgccttgtctctttcagCCCTTACCTGTGCACAGTTCCACCCTGATGGGCTTACCTTTGGAAGTGGGACTATGGACTCCCAAATTAGAATTTGGGACCTCAAGgtagggggatatagacatgaacaaagggaggtagtggtggggaattgatc Alignment from Exonerate_coding2genome CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG aaaaatatgatcctacatgattagcaaggcatctgccttgtctctttcagCCCTTACCTGTGCACAGTTCCACCCTGATGGGCTTACCTTTGGAAGTGGGACTATGGACTCCCAAATTAGAATTTGGGACCTCAAGgtagggggatatagacatgaacaaagggaggtagtggtggggaattgatc Alignment from GeneWise CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG aaaaatatgatcctacatgattagcaaggcatctgccttgtctctttcagCCCTTACCTGTGCACAGTTCCACCCTGATGGGCTTACCTTTGGAAGTGGGACTATGGACTCCCAAATTAGAATTTGGGACCTCAAGgtagggggatatagacatgaacaaagggaggtagtggtggggaattgatc #### Psat1_ID3961_8 --> 1 - 2 Original Alignment aTGCCCAGTGGAGCGCCAGAATAGAAGCAGGATGAACATCCCATTTCGCATTGGCAACGCCAAAGGAGACGAAGCTTTGGAAAAGCGGTTTCTTGACAAGGCGGTAGAACTCAACATGATCTCCTTGAAGGGGCACag tagagatccatatcctcctagagatataatcttctatttaatctctttagcTGCCCAGTAGAACGCCAGAATAGAAGCCGGATGAACATCCCATTTCGTATTGGCAATGCCAAAGGAGACAAAGCATTAGAAAAGCGGTTCCTTGACAAGGCGGTAGAACTCAATATGATATCATTGAAGGGGCACaagtgagcgagattcctctccaagcctgtggcttagagttgccagtacttct Alignment from CESAR aTGCCCAGTGGAGCGCCAGAATAGAAGCAGGATGAACATCCCATTTCGCATTGGCAACGCCAAAGGAGACGAAGCTTTGGAAAAGCGGTTTCTTGACAAGGCGGTAGAACTCAACATGATCTCCTTGAAGGGGCACag tagagatccatatcctcctagagatataatcttctatttaatctctttagcTGCCCAGTAGAACGCCAGAATAGAAGCCGGATGAACATCCCATTTCGTATTGGCAATGCCAAAGGAGACAAAGCATTAGAAAAGCGGTTCCTTGACAAGGCGGTAGAACTCAATATGATATCATTGAAGGGGCACaagtgagcgagattcctctccaagcctgtggcttagagttgccagtacttct Alignment from Spaln_aa2Genome ATGCCCAGTGGAGCGCCAGAATAGAAGCAGGATGAACATCCCATTTCGCATTGGCAACGCCAAAGGAGACGAAGCTTTGGAAAAGCGGTTTCTTGACAAGGCGGTAGAACTCAACATGATCTCCTTGAAGGGGCACAG tagagatccatatcctcctagagatataatcttctatttaatctctttagCTGCCCAGTAGAACGCCAGAATAGAAGCCGGATGAACATCCCATTTCGTATTGGCAATGCCAAAGGAGACAAAGCATTAGAAAAGCGGTTCCTTGACAAGGCGGTAGAACTCAATATGATATCATTGAAGGGGCACAAgtgagcgagattcctctccaagcctgtggcttagagttgccagtacttct Alignment from Spaln_nt2Genome ATGCCCAGTGGAGCGCCAGAATAGAAGCAGGATGAACATCCCATTTCGCATTGGCAACGCCAAAGGAGACGAAGCTTTGGAAAAGCGGTTTCTTGACAAGGCGGTAGAACTCAACATGATCTCCTTGAAGGGGCACAG tagagatccatatcctcctagagatataatcttctatttaatctctttagCTGCCCAGTAGAACGCCAGAATAGAAGCCGGATGAACATCCCATTTCGTATTGGCAATGCCAAAGGAGACAAAGCATTAGAAAAGCGGTTCCTTGACAAGGCGGTAGAACTCAATATGATATCATTGAAGGGGCACAAgtgagcgagattcctctccaagcctgtggcttagagttgccagtacttct Alignment from Pairagon ATGCCCAGTGGAGCGCCAGAATAGAAGCAGGATGAACATCCCATTTCGCATTGGCAACGCCAAAGGAGACGAAGCTTTGGAAAAGCGGTTTCTTGACAAGGCGGTAGAACTCAACATGATCTCCTTGAAGGGGCACAG tagagatccatatcctcctagagatataatcttctatttaatctctttagCTGCCCAGTAGAACGCCAGAATAGAAGCCGGATGAACATCCCATTTCGTATTGGCAATGCCAAAGGAGACAAAGCATTAGAAAAGCGGTTCCTTGACAAGGCGGTAGAACTCAATATGATATCATTGAAGGGGCACAAgtgagcgagattcctctccaagcctgtggcttagagttgccagtacttct Alignment from Exonerate_protein2genome ATGCCCAGTGGAGCGCCAGAATAGAAGCAGGATGAACATCCCATTTCGCATTGGCAACGCCAAAGGAGACGAAGCTTTGGAAAAGCGGTTTCTTGACAAGGCGGTAGAACTCAACATGATCTCCTTGAAGGGGCACAG tagagatccatatcctcctagagatataatcttctatttaatctctttagCTGCCCAGTAGAACGCCAGAATAGAAGCCGGATGAACATCCCATTTCGTATTGGCAATGCCAAAGGAGACAAAGCATTAGAAAAGCGGTTCCTTGACAAGGCGGTAGAACTCAATATGATATCATTGAAGGGGCACAAgtgagcgagattcctctccaagcctgtggcttagagttgccagtacttct Alignment from Exonerate_coding2genome ATGCCCAGTGGAGCGCCAGAATAGAAGCAGGATGAACATCCCATTTCGCATTGGCAACGCCAAAGGAGACGAAGCTTTGGAAAAGCGGTTTCTTGACAAGGCGGTAGAACTCAACATGATCTCCTTGAAGGGGCACAG tagagatccatatcctcctagagatataatcttctatttaatctctttagCTGCCCAGTAGAACGCCAGAATAGAAGCCGGATGAACATCCCATTTCGTATTGGCAATGCCAAAGGAGACAAAGCATTAGAAAAGCGGTTCCTTGACAAGGCGGTAGAACTCAATATGATATCATTGAAGGGGCACAAgtgagcgagattcctctccaagcctgtggcttagagttgccagtacttct Alignment from GeneWise ATGCCCAGTGGAGCGCCAGAATAGAAGCAGGATGAACATCCCATTTCGCATTGGCAACGCCAAAGGAGACGAAGCTTTGGAAAAGCGGTTTCTTGACAAGGCGGTAGAACTCAACATGATCTCCTTGAAGGGGCACAG tagagatccatatcctcctagagatataatcttctatttaatctctttagCTGCCCAGTAGAACGCCAGAATAGAAGCCGGATGAACATCCCATTTCGTATTGGCAATGCCAAAGGAGACAAAGCATTAGAAAAGCGGTTCCTTGACAAGGCGGTAGAACTCAATATGATATCATTGAAGGGGCACAAgtgagcgagattcctctccaagcctgtggcttagagttgccagtacttct #### Ptar1_ID5193_3 --> 2 - 2 Original Alignment aaCTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCag acataggttacctcaacaatgagctccaaacagttgtttctctgtatcagaaCTGGCTGATGTCACCTGTACCCTGCTGCTTCTCAACCCAGATTTTACCACACCTTGGAATGTCaggtgagtgcaggccctcaaagttaaaaatgtcaatcacccacagcaggcag Alignment from CESAR aaCTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCag acataggttacctcaacaatgagctccaaacagttgtttctctgtatcagaaCTGGCTGATGTCACCTGTACCCTGCTGCTTCTCAACCCAGATTTTACCACACCTTGGAATGTCaggtgagtgcaggccctcaaagttaaaaatgtcaatcacccacagcaggcag Alignment from Spaln_aa2Genome AACTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCAG acataggttacctcaacaatgagctccaaacagttgtttctctgtatcagAACTGGCTGATGTCACCTGTACCCTGCTGCTTCTCAACCCAGATTTTACCACACCTTGGAATGTCAGgtgagtgcaggccctcaaagttaaaaatgtcaatcacccacagcaggcag Alignment from Spaln_nt2Genome AACTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCAG acataggttacctcaacaatgagctccaaacagttgtttctctgtatcagAACTGGCTGATGTCACCTGTACCCTGCTGCTTCTCAACCCAGATTTTACCACACCTTGGAATGTCAGgtgagtgcaggccctcaaagttaaaaatgtcaatcacccacagcaggcag Alignment from Pairagon AACTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCAG acataggttacctcaacaatgagctccaaacagttgtttctctgtatcagAACTGGCTGATGTCACCTGTACCCTGCTGCTTCTCAACCCAGATTTTACCACACCTTGGAATGTCAGgtgagtgcaggccctcaaagttaaaaatgtcaatcacccacagcaggcag Alignment from Exonerate_protein2genome AACTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCAG acataggttacctcaacaatgagctccaaacagttgtttctctgtatcagAACTGGCTGATGTCACCTGTACCCTGCTGCTTCTCAACCCAGATTTTACCACACCTTGGAATGTCAGgtgagtgcaggccctcaaagttaaaaatgtcaatcacccacagcaggcag Alignment from Exonerate_coding2genome AACTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCAG acataggttacctcaacaatgagctccaaacagttgtttctctgtatcagAACTGGCTGATGTCACCTGTACCCTGCTGCTTCTCAACCCAGATTTTACCACACCTTGGAATGTCAGgtgagtgcaggccctcaaagttaaaaatgtcaatcacccacagcaggcag Alignment from GeneWise AACTGGCTGACGTCACCTGCACCCTGCTGCTTCTCAACCCAGACTTCACCACTGCATGGAATGTCAG acataggttacctcaacaatgagctccaaacagttgtttctctgtatcagAACTGGCTGATGTCACCTGTACCCTGCTGCTTCTCAACCCAGATTTTACCACACCTTGGAATGTCAGgtgagtgcaggccctcaaagttaaaaatgtcaatcacccacagcaggcag #### Ptar1_ID5195_5 --> 1 - 0 Original Alignment gCGCTGGGTGCTGCAGCAGTTAAGTCAGGAAACGTTCCTGCCCTCCTCTGTGGCCAAAGGAAGCTTAGGTGCAGTTCCTGCAGAGAGGACACAGCGGATAATACAGGAAGAGATGGAAGTCTGCAGTGAAGCAGCAGGGAGATATCCCAGCAACTACAATGCCTGGTCCCATCGCATCTGGGTTTTACAGAACGTGGCCAAGCTGGATCTGAAG gctactcttattgctgcccttttccttcagaccccttcctctctaaccaggCGTTGGGTGCTTCAACAGTTAGGTCAGGAAACATTCCAGCCATCTTCTATCGCTAAGGGGAGTTTAGGTGCCGTTCCTGCTGAAAGAACACAGCGGATAATACAGGAGGAGATGGAGGTCTGCAGTGAAGCTGCAGGGCGATATCCTAGCAATTATAATGGCTGGTCTCAGCGCATCTGGGTCCTACAGAATGTGGCCAAGCTTGATCTGAAAgtaagcatacaaacctggtaaaaaggctcttgcattatgagcccatagag Alignment from CESAR gCGCTGGGTGCTGCAGCAGTTAAGTCAGGAAACGTTCCTGCCCTCCTCTGTGGCCAAAGGAAGCTTAGGTGCAGTTCCTGCAGAGAGGACACAGCGGATAATACAGGAAGAGATGGAAGTCTGCAGTGAAGCAGCAGGGAGATATCCCAGCAACTACAATGCCTGGTCCCATCGCATCTGGGTTTTACAGAACGTGGCCAAGCTGGATCTGAAG gctactcttattgctgcccttttccttcagaccccttcctctctaaccaggCGTTGGGTGCTTCAACAGTTAGGTCAGGAAACATTCCAGCCATCTTCTATCGCTAAGGGGAGTTTAGGTGCCGTTCCTGCTGAAAGAACACAGCGGATAATACAGGAGGAGATGGAGGTCTGCAGTGAAGCTGCAGGGCGATATCCTAGCAATTATAATGGCTGGTCTCAGCGCATCTGGGTCCTACAGAATGTGGCCAAGCTTGATCTGAAAgtaagcatacaaacctggtaaaaaggctcttgcattatgagcccatagag Alignment from Spaln_aa2Genome GCGCTGGGTGCTGCAGCAGTTAAGTCAGGAAACGTTCCTGCCCTCCTCTGTGGCCAAAGGAAGCTTAGGTGCAGTTCCTGCAGAGAGGACACAGCGGATAATACAGGAAGAGATGGAAGTCTGCAGTGAAGCAGCAGGGAGATATCCCAGCAACTACAATGCCTGGTCCCATCGCATCTGGGTTTTACAGAACGTGGCCAAGCTGGATCTGAAG gctactcttattgctgcccttttccttcagaccccttcctctctaaccagGCGTTGGGTGCTTCAACAGTTAGGTCAGGAAACATTCCAGCCATCTTCTATCGCTAAGGGGAGTTTAGGTGCCGTTCCTGCTGAAAGAACACAGCGGATAATACAGGAGGAGATGGAGGTCTGCAGTGAAGCTGCAGGGCGATATCCTAGCAATTATAATGGCTGGTCTCAGCGCATCTGGGTCCTACAGAATGTGGCCAAGCTTGATCTGAAAgtaagcatacaaacctggtaaaaaggctcttgcattatgagcccatagag Alignment from Spaln_nt2Genome GCGCTGGGTGCTGCAGCAGTTAAGTCAGGAAACGTTCCTGCCCTCCTCTGTGGCCAAAGGAAGCTTAGGTGCAGTTCCTGCAGAGAGGACACAGCGGATAATACAGGAAGAGATGGAAGTCTGCAGTGAAGCAGCAGGGAGATATCCCAGCAACTACAATGCCTGGTCCCATCGCATCTGGGTTTTACAGAACGTGGCCAAGCTGGATCTGAAG gctactcttattgctgcccttttccttcagaccccttcctctctaaccagGCGTTGGGTGCTTCAACAGTTAGGTCAGGAAACATTCCAGCCATCTTCTATCGCTAAGGGGAGTTTAGGTGCCGTTCCTGCTGAAAGAACACAGCGGATAATACAGGAGGAGATGGAGGTCTGCAGTGAAGCTGCAGGGCGATATCCTAGCAATTATAATGGCTGGTCTCAGCGCATCTGGGTCCTACAGAATGTGGCCAAGCTTGATCTGAAAgtaagcatacaaacctggtaaaaaggctcttgcattatgagcccatagag Alignment from Pairagon GCGCTGGGTGCTGCAGCAGTTAAGTCAGGAAACGTTCCTGCCCTCCTCTGTGGCCAAAGGAAGCTTAGGTGCAGTTCCTGCAGAGAGGACACAGCGGATAATACAGGAAGAGATGGAAGTCTGCAGTGAAGCAGCAGGGAGATATCCCAGCAACTACAATGCCTGGTCCCATCGCATCTGGGTTTTACAGAACGTGGCCAAGCTGGATCTGAAG gctactcttattgctgcccttttccttcagaccccttcctctctaaccagGCGTTGGGTGCTTCAACAGTTAGGTCAGGAAACATTCCAGCCATCTTCTATCGCTAAGGGGAGTTTAGGTGCCGTTCCTGCTGAAAGAACACAGCGGATAATACAGGAGGAGATGGAGGTCTGCAGTGAAGCTGCAGGGCGATATCCTAGCAATTATAATGGCTGGTCTCAGCGCATCTGGGTCCTACAGAATGTGGCCAAGCTTGATCTGAAAgtaagcatacaaacctggtaaaaaggctcttgcattatgagcccatagag Alignment from Exonerate_protein2genome GCGCTGGGTGCTGCAGCAGTTAAGTCAGGAAACGTTCCTGCCCTCCTCTGTGGCCAAAGGAAGCTTAGGTGCAGTTCCTGCAGAGAGGACACAGCGGATAATACAGGAAGAGATGGAAGTCTGCAGTGAAGCAGCAGGGAGATATCCCAGCAACTACAATGCCTGGTCCCATCGCATCTGGGTTTTACAGAACGTGGCCAAGCTGGATCTGAAG gctactcttattgctgcccttttccttcagaccccttcctctctaaccagGCGTTGGGTGCTTCAACAGTTAGGTCAGGAAACATTCCAGCCATCTTCTATCGCTAAGGGGAGTTTAGGTGCCGTTCCTGCTGAAAGAACACAGCGGATAATACAGGAGGAGATGGAGGTCTGCAGTGAAGCTGCAGGGCGATATCCTAGCAATTATAATGGCTGGTCTCAGCGCATCTGGGTCCTACAGAATGTGGCCAAGCTTGATCTGAAAgtaagcatacaaacctggtaaaaaggctcttgcattatgagcccatagag Alignment from Exonerate_coding2genome GCGCTGGGTGCTGCAGCAGTTAAGTCAGGAAACGTTCCTGCCCTCCTCTGTGGCCAAAGGAAGCTTAGGTGCAGTTCCTGCAGAGAGGACACAGCGGATAATACAGGAAGAGATGGAAGTCTGCAGTGAAGCAGCAGGGAGATATCCCAGCAACTACAATGCCTGGTCCCATCGCATCTGGGTTTTACAGAACGTGGCCAAGCTGGATCTGAAG gctactcttattgctgcccttttccttcagaccccttcctctctaaccagGCGTTGGGTGCTTCAACAGTTAGGTCAGGAAACATTCCAGCCATCTTCTATCGCTAAGGGGAGTTTAGGTGCCGTTCCTGCTGAAAGAACACAGCGGATAATACAGGAGGAGATGGAGGTCTGCAGTGAAGCTGCAGGGCGATATCCTAGCAATTATAATGGCTGGTCTCAGCGCATCTGGGTCCTACAGAATGTGGCCAAGCTTGATCTGAAAgtaagcatacaaacctggtaaaaaggctcttgcattatgagcccatagag Alignment from GeneWise GCGCTGGGTGCTGCAGCAGTTAAGTCAGGAAACGTTCCTGCCCTCCTCTGTGGCCAAAGGAAGCTTAGGTGCAGTTCCTGCAGAGAGGACACAGCGGATAATACAGGAAGAGATGGAAGTCTGCAGTGAAGCAGCAGGGAGATATCCCAGCAACTACAATGCCTGGTCCCATCGCATCTGGGTTTTACAGAACGTGGCCAAGCTGGATCTGAAG gctactcttattgctgcccttttccttcagaccccttcctctctaaccagGCGTTGGGTGCTTCAACAGTTAGGTCAGGAAACATTCCAGCCATCTTCTATCGCTAAGGGGAGTTTAGGTGCCGTTCCTGCTGAAAGAACACAGCGGATAATACAGGAGGAGATGGAGGTCTGCAGTGAAGCTGCAGGGCGATATCCTAGCAATTATAATGGCTGGTCTCAGCGCATCTGGGTCCTACAGAATGTGGCCAAGCTTGATCTGAAAgtaagcatacaaacctggtaaaaaggctcttgcattatgagcccatagag #### Pten_ID6742_2 --> 2 - 2 Original Alignment atATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTATACAGGAACAATATTGATGATGTAGTAag agttgtggctagtgtggtacggactggactcatttctctgttccttttagatATTTATCCAAACATTATAGCTAAGGGTTTTCCTGCGGAAAGACTTGAAGGTGTGTACAGGAACAATATTGATGATGTAGTGaggtgagtatagttgatgtgtcttacttcctatatcagtttttacattgcgg Alignment from CESAR atATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTATACAGGAACAATATTGATGATGTAGTAag agttgtggctagtgtggtacggactggactcatttctctgttccttttagatATTTATCCAAACATTATAGCTAAGGGTTTTCCTGCGGAAAGACTTGAAGGTGTGTACAGGAACAATATTGATGATGTAGTGaggtgagtatagttgatgtgtcttacttcctatatcagtttttacattgcgg Alignment from Spaln_aa2Genome ATATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTATACAGGAACAATATTGATGATGTAGTAAG agttgtggctagtgtggtacggactggactcatttctctgttccttttagATATTTATCCAAACATTATAGCTAAGGGTTTTCCTGCGGAAAGACTTGAAGGTGTGTACAGGAACAATATTGATGATGTAGTGAGgtgagtatagttgatgtgtcttacttcctatatcagtttttacattgcgg Alignment from Spaln_nt2Genome ATATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTATACAGGAACAATATTGATGATGTAGTAAG agttgtggctagtgtggtacggactggactcatttctctgttccttttagATATTTATCCAAACATTATAGCTAAGGGTTTTCCTGCGGAAAGACTTGAAGGTGTGTACAGGAACAATATTGATGATGTAGTGAGgtgagtatagttgatgtgtcttacttcctatatcagtttttacattgcgg Alignment from Pairagon ATATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTATACAGGAACAATATTGATGATGTAGTAAG agttgtggctagtgtggtacggactggactcatttctctgttccttttagATATTTATCCAAACATTATAGCTAAGGGTTTTCCTGCGGAAAGACTTGAAGGTGTGTACAGGAACAATATTGATGATGTAGTGAGgtgagtatagttgatgtgtcttacttcctatatcagtttttacattgcgg Alignment from Exonerate_protein2genome ATATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTATACAGGAACAATATTGATGATGTAGTAAG agttgtggctagtgtggtacggactggactcatttctctgttccttttagATATTTATCCAAACATTATAGCTAAGGGTTTTCCTGCGGAAAGACTTGAAGGTGTGTACAGGAACAATATTGATGATGTAGTGAGgtgagtatagttgatgtgtcttacttcctatatcagtttttacattgcgg Alignment from Exonerate_coding2genome ATATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTATACAGGAACAATATTGATGATGTAGTAAG agttgtggctagtgtggtacggactggactcatttctctgttccttttagATATTTATCCAAACATTATAGCTAAGGGTTTTCCTGCGGAAAGACTTGAAGGTGTGTACAGGAACAATATTGATGATGTAGTGAGgtgagtatagttgatgtgtcttacttcctatatcagtttttacattgcgg Alignment from GeneWise ATATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTATACAGGAACAATATTGATGATGTAGTAAG agttgtggctagtgtggtacggactggactcatttctctgttccttttagATATTTATCCAAACATTATAGCTAAGGGTTTTCCTGCGGAAAGACTTGAAGGTGTGTACAGGAACAATATTGATGATGTAGTGAGgtgagtatagttgatgtgtcttacttcctatatcagtttttacattgcgg #### Pten_ID6747_5 --> 2 - 0 Original Alignment ttGCACAGTATCCTTTTGAAGACCATAACCCACCACAGCTAGAACTTATCAAACCCTTCTGTGAAGATCTTGACCAATGGCTAAGTGAAGATGACAATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACGGACTGGTGTAATGATTTGTGCATATTTATTGCATCGGGGCAAATTTTTAAAGGCACAAGAGGCCCTAGATTTTTATGGGGAAGTAAGGACCAGAGACAAAAAG ccctggataagatatttatgagcaccctgttcattcccctctctctccagttGCTCAGTACCCTTTTGAAGACCATAACCCACCACAGCTAGAGCTCATCAAACCCTTCTCTGAAGATCTAGATCAGTGGTTAAGTGAAGATGACAATCATGTAGCAGCAATTCACTGTAAGGCCGGAAAGGGACGGATCGGTGTAATGGTCTGTGCATATTTATTACATCGGGGCAAATTCTTAAAGTCACAAGAGGCCCTCGATTTTTATGGTGTAGTAAGGACTAGAGACAAAAAGgtaagttgtggacatttttcctataaagtaagcactaacaatataccaag Alignment from CESAR ttGCACAGTATCCTTTTGAAGACCATAACCCACCACAGCTAGAACTTATCAAACCCTTCTGTGAAGATCTTGACCAATGGCTAAGTGAAGATGACAATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACGGACTGGTGTAATGATTTGTGCATATTTATTGCATCGGGGCAAATTTTTAAAGGCACAAGAGGCCCTAGATTTTTATGGGGAAGTAAGGACCAGAGACAAAAAG ccctggataagatatttatgagcaccctgttcattcccctctctctccagttGCTCAGTACCCTTTTGAAGACCATAACCCACCACAGCTAGAGCTCATCAAACCCTTCTCTGAAGATCTAGATCAGTGGTTAAGTGAAGATGACAATCATGTAGCAGCAATTCACTGTAAGGCCGGAAAGGGACGGATCGGTGTAATGGTCTGTGCATATTTATTACATCGGGGCAAATTCTTAAAGTCACAAGAGGCCCTCGATTTTTATGGTGTAGTAAGGACTAGAGACAAAAAGgtaagttgtggacatttttcctataaagtaagcactaacaatataccaag Alignment from Spaln_aa2Genome TTGCACAGTATCCTTTTGAAGACCATAACCCACCACAGCTAGAACTTATCAAACCCTTCTGTGAAGATCTTGACCAATGGCTAAGTGAAGATGACAATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACGGACTGGTGTAATGATTTGTGCATATTTATTGCATCGGGGCAAATTTTTAAAGGCACAAGAGGCCCTAGATTTTTATGGGGAAGTAAGGACCAGAGACAAAAAG ccctggataagatatttatgagcaccctgttcattcccctctctctccagTTGCTCAGTACCCTTTTGAAGACCATAACCCACCACAGCTAGAGCTCATCAAACCCTTCTCTGAAGATCTAGATCAGTGGTTAAGTGAAGATGACAATCATGTAGCAGCAATTCACTGTAAGGCCGGAAAGGGACGGATCGGTGTAATGGTCTGTGCATATTTATTACATCGGGGCAAATTCTTAAAGTCACAAGAGGCCCTCGATTTTTATGGTGTAGTAAGGACTAGAGACAAAAAGgtaagttgtggacatttttcctataaagtaagcactaacaatataccaag Alignment from Spaln_nt2Genome TTGCACAGTATCCTTTTGAAGACCATAACCCACCACAGCTAGAACTTATCAAACCCTTCTGTGAAGATCTTGACCAATGGCTAAGTGAAGATGACAATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACGGACTGGTGTAATGATTTGTGCATATTTATTGCATCGGGGCAAATTTTTAAAGGCACAAGAGGCCCTAGATTTTTATGGGGAAGTAAGGACCAGAGACAAAAAG ccctggataagatatttatgagcaccctgttcattcccctctctctccagTTGCTCAGTACCCTTTTGAAGACCATAACCCACCACAGCTAGAGCTCATCAAACCCTTCTCTGAAGATCTAGATCAGTGGTTAAGTGAAGATGACAATCATGTAGCAGCAATTCACTGTAAGGCCGGAAAGGGACGGATCGGTGTAATGGTCTGTGCATATTTATTACATCGGGGCAAATTCTTAAAGTCACAAGAGGCCCTCGATTTTTATGGTGTAGTAAGGACTAGAGACAAAAAGgtaagttgtggacatttttcctataaagtaagcactaacaatataccaag Alignment from Pairagon TTGCACAGTATCCTTTTGAAGACCATAACCCACCACAGCTAGAACTTATCAAACCCTTCTGTGAAGATCTTGACCAATGGCTAAGTGAAGATGACAATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACGGACTGGTGTAATGATTTGTGCATATTTATTGCATCGGGGCAAATTTTTAAAGGCACAAGAGGCCCTAGATTTTTATGGGGAAGTAAGGACCAGAGACAAAAAG ccctggataagatatttatgagcaccctgttcattcccctctctctccagTTGCTCAGTACCCTTTTGAAGACCATAACCCACCACAGCTAGAGCTCATCAAACCCTTCTCTGAAGATCTAGATCAGTGGTTAAGTGAAGATGACAATCATGTAGCAGCAATTCACTGTAAGGCCGGAAAGGGACGGATCGGTGTAATGGTCTGTGCATATTTATTACATCGGGGCAAATTCTTAAAGTCACAAGAGGCCCTCGATTTTTATGGTGTAGTAAGGACTAGAGACAAAAAGgtaagttgtggacatttttcctataaagtaagcactaacaatataccaag Alignment from Exonerate_protein2genome TTGCACAGTATCCTTTTGAAGACCATAACCCACCACAGCTAGAACTTATCAAACCCTTCTGTGAAGATCTTGACCAATGGCTAAGTGAAGATGACAATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACGGACTGGTGTAATGATTTGTGCATATTTATTGCATCGGGGCAAATTTTTAAAGGCACAAGAGGCCCTAGATTTTTATGGGGAAGTAAGGACCAGAGACAAAAAG ccctggataagatatttatgagcaccctgttcattcccctctctctccagTTGCTCAGTACCCTTTTGAAGACCATAACCCACCACAGCTAGAGCTCATCAAACCCTTCTCTGAAGATCTAGATCAGTGGTTAAGTGAAGATGACAATCATGTAGCAGCAATTCACTGTAAGGCCGGAAAGGGACGGATCGGTGTAATGGTCTGTGCATATTTATTACATCGGGGCAAATTCTTAAAGTCACAAGAGGCCCTCGATTTTTATGGTGTAGTAAGGACTAGAGACAAAAAGgtaagttgtggacatttttcctataaagtaagcactaacaatataccaag Alignment from Exonerate_coding2genome TTGCACAGTATCCTTTTGAAGACCATAACCCACCACAGCTAGAACTTATCAAACCCTTCTGTGAAGATCTTGACCAATGGCTAAGTGAAGATGACAATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACGGACTGGTGTAATGATTTGTGCATATTTATTGCATCGGGGCAAATTTTTAAAGGCACAAGAGGCCCTAGATTTTTATGGGGAAGTAAGGACCAGAGACAAAAAG ccctggataagatatttatgagcaccctgttcattcccctctctctccagTTGCTCAGTACCCTTTTGAAGACCATAACCCACCACAGCTAGAGCTCATCAAACCCTTCTCTGAAGATCTAGATCAGTGGTTAAGTGAAGATGACAATCATGTAGCAGCAATTCACTGTAAGGCCGGAAAGGGACGGATCGGTGTAATGGTCTGTGCATATTTATTACATCGGGGCAAATTCTTAAAGTCACAAGAGGCCCTCGATTTTTATGGTGTAGTAAGGACTAGAGACAAAAAGgtaagttgtggacatttttcctataaagtaagcactaacaatataccaag Alignment from GeneWise TTGCACAGTATCCTTTTGAAGACCATAACCCACCACAGCTAGAACTTATCAAACCCTTCTGTGAAGATCTTGACCAATGGCTAAGTGAAGATGACAATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACGGACTGGTGTAATGATTTGTGCATATTTATTGCATCGGGGCAAATTTTTAAAGGCACAAGAGGCCCTAGATTTTTATGGGGAAGTAAGGACCAGAGACAAAAAG ccctggataagatatttatgagcaccctgttcattcccctctctctccagTTGCTCAGTACCCTTTTGAAGACCATAACCCACCACAGCTAGAGCTCATCAAACCCTTCTCTGAAGATCTAGATCAGTGGTTAAGTGAAGATGACAATCATGTAGCAGCAATTCACTGTAAGGCCGGAAAGGGACGGATCGGTGTAATGGTCTGTGCATATTTATTACATCGGGGCAAATTCTTAAAGTCACAAGAGGCCCTCGATTTTTATGGTGTAGTAAGGACTAGAGACAAAAAGgtaagttgtggacatttttcctataaagtaagcactaacaatataccaag #### Pten_ID6748_6 --> 0 - 1 Original Alignment GGAGTCACAATTCCCAGTCAGAGGCGCTATGTATATTATTATAGCTACCTGCTAAAAAATCACCTGGATTACAGACCCGTGGCACTGCTGTTTCACAAGATGATGTTTGAAACTATTCCAATGTTCAGTGGCGGAACTTGCa ttcttttattttttacccccctcgtctcagtcctgtttggttcattcaagGGAGTCTCAATTCCCAGCCAGAGGCGCTATGTATATTATTATAGCTACCTGCTAAAAAATCACCTGGATTACAGACCTGTGGCACTGCTGTTCCACAAGATGATGTTTGAAACTATTCCAATGTTCAGTGGTGGAACCTGCagtctgtgccattctctaaagctgattttaaattatataagtagatgtata Alignment from CESAR GGAGTCACAATTCCCAGTCAGAGGCGCTATGTATATTATTATAGCTACCTGCTAAAAAATCACCTGGATTACAGACCCGTGGCACTGCTGTTTCACAAGATGATGTTTGAAACTATTCCAATGTTCAGTGGCGGAACTTGCa ttcttttattttttacccccctcgtctcagtcctgtttggttcattcaagGGAGTCTCAATTCCCAGCCAGAGGCGCTATGTATATTATTATAGCTACCTGCTAAAAAATCACCTGGATTACAGACCTGTGGCACTGCTGTTCCACAAGATGATGTTTGAAACTATTCCAATGTTCAGTGGTGGAACCTGCagtctgtgccattctctaaagctgattttaaattatataagtagatgtata Alignment from Spaln_aa2Genome GGAGTCACAATTCCCAGTCAGAGGCGCTATGTATATTATTATAGCTACCTGCTAAAAAATCACCTGGATTACAGACCCGTGGCACTGCTGTTTCACAAGATGATGTTTGAAACTATTCCAATGTTCAGTGGCGGAACTTGCA ttcttttattttttacccccctcgtctcagtcctgtttggttcattcaagGGAGTCTCAATTCCCAGCCAGAGGCGCTATGTATATTATTATAGCTACCTGCTAAAAAATCACCTGGATTACAGACCTGTGGCACTGCTGTTCCACAAGATGATGTTTGAAACTATTCCAATGTTCAGTGGTGGAACCTGCAgtctgtgccattctctaaagctgattttaaattatataagtagatgtata Alignment from Spaln_nt2Genome GGAGTCACAATTCCCAGTCAGAGGCGCTATGTATATTATTATAGCTACCTGCTAAAAAATCACCTGGATTACAGACCCGTGGCACTGCTGTTTCACAAGATGATGTTTGAAACTATTCCAATGTTCAGTGGCGGAACTTGCA ttcttttattttttacccccctcgtctcagtcctgtttggttcattcaagGGAGTCTCAATTCCCAGCCAGAGGCGCTATGTATATTATTATAGCTACCTGCTAAAAAATCACCTGGATTACAGACCTGTGGCACTGCTGTTCCACAAGATGATGTTTGAAACTATTCCAATGTTCAGTGGTGGAACCTGCAgtctgtgccattctctaaagctgattttaaattatataagtagatgtata Alignment from Pairagon GGAGTCACAATTCCCAGTCAGAGGCGCTATGTATATTATTATAGCTACCTGCTAAAAAATCACCTGGATTACAGACCCGTGGCACTGCTGTTTCACAAGATGATGTTTGAAACTATTCCAATGTTCAGTGGCGGAACTTGCA ttcttttattttttacccccctcgtctcagtcctgtttggttcattcaagGGAGTCTCAATTCCCAGCCAGAGGCGCTATGTATATTATTATAGCTACCTGCTAAAAAATCACCTGGATTACAGACCTGTGGCACTGCTGTTCCACAAGATGATGTTTGAAACTATTCCAATGTTCAGTGGTGGAACCTGCAgtctgtgccattctctaaagctgattttaaattatataagtagatgtata Alignment from Exonerate_protein2genome GGAGTCACAATTCCCAGTCAGAGGCGCTATGTATATTATTATAGCTACCTGCTAAAAAATCACCTGGATTACAGACCCGTGGCACTGCTGTTTCACAAGATGATGTTTGAAACTATTCCAATGTTCAGTGGCGGAACTTGCA ttcttttattttttacccccctcgtctcagtcctgtttggttcattcaagGGAGTCTCAATTCCCAGCCAGAGGCGCTATGTATATTATTATAGCTACCTGCTAAAAAATCACCTGGATTACAGACCTGTGGCACTGCTGTTCCACAAGATGATGTTTGAAACTATTCCAATGTTCAGTGGTGGAACCTGCAgtctgtgccattctctaaagctgattttaaattatataagtagatgtata Alignment from Exonerate_coding2genome GGAGTCACAATTCCCAGTCAGAGGCGCTATGTATATTATTATAGCTACCTGCTAAAAAATCACCTGGATTACAGACCCGTGGCACTGCTGTTTCACAAGATGATGTTTGAAACTATTCCAATGTTCAGTGGCGGAACTTGCA ttcttttattttttacccccctcgtctcagtcctgtttggttcattcaagGGAGTCTCAATTCCCAGCCAGAGGCGCTATGTATATTATTATAGCTACCTGCTAAAAAATCACCTGGATTACAGACCTGTGGCACTGCTGTTCCACAAGATGATGTTTGAAACTATTCCAATGTTCAGTGGTGGAACCTGCAgtctgtgccattctctaaagctgattttaaattatataagtagatgtata Alignment from GeneWise GGAGTCACAATTCCCAGTCAGAGGCGCTATGTATATTATTATAGCTACCTGCTAAAAAATCACCTGGATTACAGACCCGTGGCACTGCTGTTTCACAAGATGATGTTTGAAACTATTCCAATGTTCAGTGGCGGAACTTGCA ttcttttattttttacccccctcgtctcagtcctgtttggttcattcaagGGAGTCTCAATTCCCAGCCAGAGGCGCTATGTATATTATTATAGCTACCTGCTAAAAAATCACCTGGATTACAGACCTGTGGCACTGCTGTTCCACAAGATGATGTTTGAAACTATTCCAATGTTCAGTGGTGGAACCTGCAgtctgtgccattctctaaagctgattttaaattatataagtagatgtata #### Pten_ID6750_8 --> 0 - 0 Original Alignment GACAAAATGTTTCACTTTTGGGTAAATACGTTCTTCATACCAGGACCAGAGGAAACCTCAGAAAAAGTGGAAAATGGAAGTCTTTGTGATCAGGAAATCGATAGCATTTGCAGTATAGAGCGTGCAGATAATGACAAGGAGTATCTTGTACTCACCCTAACAAAAAACGATCTTGACAAAGCAAACAAAGACAAGGCCAACCGATACTTCTCTCCAAATTTTAAG gatacaggcaatgcacttttaaactattctgactcttccccctctgctagGACAAAATGTTTCACTTTTGGGTAAATACATTCTTCATACCTGGACCAGAGGAAACCTCCGAAAAAGTGGAAAATGGAAGTCTTTGTGATCAGGAAATTGATAGCATTTGCAGTATAGAGCGTGCAGATAATGACAAGGAGTATCTTGTACTCACACTAACAAAAAACGATCTTGACAAAGCAAACAAAGACAAAGCCAACCGATACTTCTCTCCAAATTTTAAGgtgagacaaagccgtctgtaaccaaaaagttacgtcgcactcaatgtgat Alignment from CESAR GACAAAATGTTTCACTTTTGGGTAAATACGTTCTTCATACCAGGACCAGAGGAAACCTCAGAAAAAGTGGAAAATGGAAGTCTTTGTGATCAGGAAATCGATAGCATTTGCAGTATAGAGCGTGCAGATAATGACAAGGAGTATCTTGTACTCACCCTAACAAAAAACGATCTTGACAAAGCAAACAAAGACAAGGCCAACCGATACTTCTCTCCAAATTTTAAG gatacaggcaatgcacttttaaactattctgactcttccccctctgctagGACAAAATGTTTCACTTTTGGGTAAATACATTCTTCATACCTGGACCAGAGGAAACCTCCGAAAAAGTGGAAAATGGAAGTCTTTGTGATCAGGAAATTGATAGCATTTGCAGTATAGAGCGTGCAGATAATGACAAGGAGTATCTTGTACTCACACTAACAAAAAACGATCTTGACAAAGCAAACAAAGACAAAGCCAACCGATACTTCTCTCCAAATTTTAAGgtgagacaaagccgtctgtaaccaaaaagttacgtcgcactcaatgtgat Alignment from Spaln_aa2Genome GACAAAATGTTTCACTTTTGGGTAAATACGTTCTTCATACCAGGACCAGAGGAAACCTCAGAAAAAGTGGAAAATGGAAGTCTTTGTGATCAGGAAATCGATAGCATTTGCAGTATAGAGCGTGCAGATAATGACAAGGAGTATCTTGTACTCACCCTAACAAAAAACGATCTTGACAAAGCAAACAAAGACAAGGCCAACCGATACTTCTCTCCAAATTTTAAG gatacaggcaatgcacttttaaactattctgactcttccccctctgctagGACAAAATGTTTCACTTTTGGGTAAATACATTCTTCATACCTGGACCAGAGGAAACCTCCGAAAAAGTGGAAAATGGAAGTCTTTGTGATCAGGAAATTGATAGCATTTGCAGTATAGAGCGTGCAGATAATGACAAGGAGTATCTTGTACTCACACTAACAAAAAACGATCTTGACAAAGCAAACAAAGACAAAGCCAACCGATACTTCTCTCCAAATTTTAAGgtgagacaaagccgtctgtaaccaaaaagttacgtcgcactcaatgtgat Alignment from Spaln_nt2Genome GACAAAATGTTTCACTTTTGGGTAAATACGTTCTTCATACCAGGACCAGAGGAAACCTCAGAAAAAGTGGAAAATGGAAGTCTTTGTGATCAGGAAATCGATAGCATTTGCAGTATAGAGCGTGCAGATAATGACAAGGAGTATCTTGTACTCACCCTAACAAAAAACGATCTTGACAAAGCAAACAAAGACAAGGCCAACCGATACTTCTCTCCAAATTTTAAG gatacaggcaatgcacttttaaactattctgactcttccccctctgctagGACAAAATGTTTCACTTTTGGGTAAATACATTCTTCATACCTGGACCAGAGGAAACCTCCGAAAAAGTGGAAAATGGAAGTCTTTGTGATCAGGAAATTGATAGCATTTGCAGTATAGAGCGTGCAGATAATGACAAGGAGTATCTTGTACTCACACTAACAAAAAACGATCTTGACAAAGCAAACAAAGACAAAGCCAACCGATACTTCTCTCCAAATTTTAAGgtgagacaaagccgtctgtaaccaaaaagttacgtcgcactcaatgtgat Alignment from Pairagon GACAAAATGTTTCACTTTTGGGTAAATACGTTCTTCATACCAGGACCAGAGGAAACCTCAGAAAAAGTGGAAAATGGAAGTCTTTGTGATCAGGAAATCGATAGCATTTGCAGTATAGAGCGTGCAGATAATGACAAGGAGTATCTTGTACTCACCCTAACAAAAAACGATCTTGACAAAGCAAACAAAGACAAGGCCAACCGATACTTCTCTCCAAATTTTAAG gatacaggcaatgcacttttaaactattctgactcttccccctctgctagGACAAAATGTTTCACTTTTGGGTAAATACATTCTTCATACCTGGACCAGAGGAAACCTCCGAAAAAGTGGAAAATGGAAGTCTTTGTGATCAGGAAATTGATAGCATTTGCAGTATAGAGCGTGCAGATAATGACAAGGAGTATCTTGTACTCACACTAACAAAAAACGATCTTGACAAAGCAAACAAAGACAAAGCCAACCGATACTTCTCTCCAAATTTTAAGgtgagacaaagccgtctgtaaccaaaaagttacgtcgcactcaatgtgat Alignment from Exonerate_protein2genome GACAAAATGTTTCACTTTTGGGTAAATACGTTCTTCATACCAGGACCAGAGGAAACCTCAGAAAAAGTGGAAAATGGAAGTCTTTGTGATCAGGAAATCGATAGCATTTGCAGTATAGAGCGTGCAGATAATGACAAGGAGTATCTTGTACTCACCCTAACAAAAAACGATCTTGACAAAGCAAACAAAGACAAGGCCAACCGATACTTCTCTCCAAATTTTAAG gatacaggcaatgcacttttaaactattctgactcttccccctctgctagGACAAAATGTTTCACTTTTGGGTAAATACATTCTTCATACCTGGACCAGAGGAAACCTCCGAAAAAGTGGAAAATGGAAGTCTTTGTGATCAGGAAATTGATAGCATTTGCAGTATAGAGCGTGCAGATAATGACAAGGAGTATCTTGTACTCACACTAACAAAAAACGATCTTGACAAAGCAAACAAAGACAAAGCCAACCGATACTTCTCTCCAAATTTTAAGgtgagacaaagccgtctgtaaccaaaaagttacgtcgcactcaatgtgat Alignment from Exonerate_coding2genome GACAAAATGTTTCACTTTTGGGTAAATACGTTCTTCATACCAGGACCAGAGGAAACCTCAGAAAAAGTGGAAAATGGAAGTCTTTGTGATCAGGAAATCGATAGCATTTGCAGTATAGAGCGTGCAGATAATGACAAGGAGTATCTTGTACTCACCCTAACAAAAAACGATCTTGACAAAGCAAACAAAGACAAGGCCAACCGATACTTCTCTCCAAATTTTAAG gatacaggcaatgcacttttaaactattctgactcttccccctctgctagGACAAAATGTTTCACTTTTGGGTAAATACATTCTTCATACCTGGACCAGAGGAAACCTCCGAAAAAGTGGAAAATGGAAGTCTTTGTGATCAGGAAATTGATAGCATTTGCAGTATAGAGCGTGCAGATAATGACAAGGAGTATCTTGTACTCACACTAACAAAAAACGATCTTGACAAAGCAAACAAAGACAAAGCCAACCGATACTTCTCTCCAAATTTTAAGgtgagacaaagccgtctgtaaccaaaaagttacgtcgcactcaatgtgat Alignment from GeneWise GACAAAATGTTTCACTTTTGGGTAAATACGTTCTTCATACCAGGACCAGAGGAAACCTCAGAAAAAGTGGAAAATGGAAGTCTTTGTGATCAGGAAATCGATAGCATTTGCAGTATAGAGCGTGCAGATAATGACAAGGAGTATCTTGTACTCACCCTAACAAAAAACGATCTTGACAAAGCAAACAAAGACAAGGCCAACCGATACTTCTCTCCAAATTTTAAG gatacaggcaatgcacttttaaactattctgactcttccccctctgctagGACAAAATGTTTCACTTTTGGGTAAATACATTCTTCATACCTGGACCAGAGGAAACCTCCGAAAAAGTGGAAAATGGAAGTCTTTGTGATCAGGAAATTGATAGCATTTGCAGTATAGAGCGTGCAGATAATGACAAGGAGTATCTTGTACTCACACTAACAAAAAACGATCTTGACAAAGCAAACAAAGACAAAGCCAACCGATACTTCTCTCCAAATTTTAAGgtgagacaaagccgtctgtaaccaaaaagttacgtcgcactcaatgtgat #### Pygm_ID1683_7 --> 2 - 0 Original Alignment tcAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT tgtccatctcctccagttaacactgagcatatatctttttctctttccagtcAATGTTGGAGGGTACATTCTGTCTGTGTTAGACCGAAACCTATCTGAGAACATCTCCCGTGTATTATACCCCAATGATAATgtgagccagcctgcaccagaggaaataaacctaggaaactctgcacagtc Alignment from CESAR tcAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT agcccatctcctccagttaacactgagcatatatctttttctctttccagtcAATGTTGGAGGGTACATTCTGTCTGTGTTAGACCGAAACCTATCTGAGAACATCTCCCGTGTATTATACCCCAATGATAATgtgagccagcctgcaccagaggaaataaacctaggaaactctgcacagtc Alignment from Spaln_aa2Genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT tgtccatctcctccagttaacactgagcatatatctttttctctttccagTCAATGTTGGAGGGTACATTCTGTCTGTGTTAGACCGAAACCTATCTGAGAACATCTCCCGTGTATTATACCCCAATGATAATgtgagccagcctgcaccagaggaaataaacctaggaaactctgcacagtc Alignment from Spaln_nt2Genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT tgtccatctcctccagttaacactgagcatatatctttttctctttccagTCAATGTTGGAGGGTACATTCTGTCTGTGTTAGACCGAAACCTATCTGAGAACATCTCCCGTGTATTATACCCCAATGATAATgtgagccagcctgcaccagaggaaataaacctaggaaactctgcacagtc Alignment from Pairagon TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT tgtccatctcctccagttaacactgagcatatatctttttctctttccagTCAATGTTGGAGGGTACATTCTGTCTGTGTTAGACCGAAACCTATCTGAGAACATCTCCCGTGTATTATACCCCAATGATAATgtgagccagcctgcaccagaggaaataaacctaggaaactctgcacagtc Alignment from Exonerate_protein2genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT tgtccatctcctccagttaacactgagcatatatctttttctctttccagTCAATGTTGGAGGGTACATTCTGTCTGTGTTAGACCGAAACCTATCTGAGAACATCTCCCGTGTATTATACCCCAATGATAATgtgagccagcctgcaccagaggaaataaacctaggaaactctgcacagtc Alignment from Exonerate_coding2genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT tgtccatctcctccagttaacactgagcatatatctttttctctttccagTCAATGTTGGAGGGTACATTCTGTCTGTGTTAGACCGAAACCTATCTGAGAACATCTCCCGTGTATTATACCCCAATGATAATgtgagccagcctgcaccagaggaaataaacctaggaaactctgcacagtc Alignment from GeneWise TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT tgtccatctcctccagttaacactgagcatatatctttttctctttccagTCAATGTTGGAGGGTACATTCTGTCTGTGTTAGACCGAAACCTATCTGAGAACATCTCCCGTGTATTATACCCCAATGATAATgtgagccagcctgcaccagaggaaataaacctaggaaactctgcacagtc #### Pygm_ID1691_15 --> 2 - 0 Original Alignment gcATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG tcagagcattttcagagcaacagtaagtagccttacttttccttttgtaggcATAAAAAGGGAGCTCAATCGGTTCATGGTGCCAAAGACTATCATGATTGGAGGGAAAgtaagtacagactgatgcatgaaaaaaggagattgatgcatgagaataag Alignment from CESAR gcATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG tcagagcattttcagagcaacagtaagtagccttacttttccttttgtaggcATAAAAAGGGAGCTCAATCGGTTCATGGTGCCAAAGACTATCATGATTGGAGGGAAAgtaagtacagactgatgcatgaaaaaaggagattgatgcatgagaataag Alignment from Spaln_aa2Genome GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG tcagagcattttcagagcaacagtaagtagccttacttttccttttgtagGCATAAAAAGGGAGCTCAATCGGTTCATGGTGCCAAAGACTATCATGATTGGAGGGAAAgtaagtacagactgatgcatgaaaaaaggagattgatgcatgagaataag Alignment from Spaln_nt2Genome GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG tcagagcattttcagagcaacagtaagtagccttacttttccttttgtagGCATAAAAAGGGAGCTCAATCGGTTCATGGTGCCAAAGACTATCATGATTGGAGGGAAAgtaagtacagactgatgcatgaaaaaaggagattgatgcatgagaataag Alignment from Pairagon GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG tcagagcattttcagagcaacagtaagtagccttacttttccttttgtagGCATAAAAAGGGAGCTCAATCGGTTCATGGTGCCAAAGACTATCATGATTGGAGGGAAAgtaagtacagactgatgcatgaaaaaaggagattgatgcatgagaataag Alignment from Exonerate_protein2genome GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG tcagagcattttcagagcaacagtaagtagccttacttttccttttgtagGCATAAAAAGGGAGCTCAATCGGTTCATGGTGCCAAAGACTATCATGATTGGAGGGAAAgtaagtacagactgatgcatgaaaaaaggagattgatgcatgagaataag Alignment from Exonerate_coding2genome GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG tcagagcattttcagagcaacagtaagtagccttacttttccttttgtagGCATAAAAAGGGAGCTCAATCGGTTCATGGTGCCAAAGACTATCATGATTGGAGGGAAAgtaagtacagactgatgcatgaaaaaaggagattgatgcatgagaataag Alignment from GeneWise GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG tcagagcattttcagagcaacagtaagtagccttacttttccttttgtagGCATAAAAAGGGAGCTCAATCGGTTCATGGTGCCAAAGACTATCATGATTGGAGGGAAAgtaagtacagactgatgcatgaaaaaaggagattgatgcatgagaataag #### Pygm_ID1695_19 --> 1 - 0 Original Alignment gTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG attccaaccttttctcttccaggtctgatcgtgttaactttctgtcccagcTTTAAAGTGTTTGTGGATCATGAGGAGTATATTAAATGTCAGGATAAAGTCAGTGGATTATATAATgtgagttagtattcaataaccagggacggggtaaacccactgctcttcaa Alignment from CESAR gTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG attccaaccttttctcttccaggtctgatcgtgttaactttctgtcccagcTTTAAAGTGTTTGTGGATCATGAGGAGTATATTAAATGTCAGGATAAAGTCAGTGGATTATATAATgtgagttagtattcaataaccagggacggggtaaacccactgctcttcaa Alignment from Spaln_aa2Genome GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG attccaaccttttctcttccaggtctgatcgtgttaactttctgtcccagCTTTAAAGTGTTTGTGGATCATGAGGAGTATATTAAATGTCAGGATAAAGTCAGTGGATTATATAATgtgagttagtattcaataaccagggacggggtaaacccactgctcttcaa Alignment from Spaln_nt2Genome GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG attccaaccttttctcttccaggtctgatcgtgttaactttctgtcccagCTTTAAAGTGTTTGTGGATCATGAGGAGTATATTAAATGTCAGGATAAAGTCAGTGGATTATATAATgtgagttagtattcaataaccagggacggggtaaacccactgctcttcaa Alignment from Pairagon GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG attccaaccttttctcttccaggtctgatcgtgttaactttctgtcccagCTTTAAAGTGTTTGTGGATCATGAGGAGTATATTAAATGTCAGGATAAAGTCAGTGGATTATATAATgtgagttagtattcaataaccagggacggggtaaacccactgctcttcaa Alignment from Exonerate_protein2genome GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG attccaaccttttctcttccaggtctgatcgtgttaactttctgtcccagCTTTAAAGTGTTTGTGGATCATGAGGAGTATATTAAATGTCAGGATAAAGTCAGTGGATTATATAATgtgagttagtattcaataaccagggacggggtaaacccactgctcttcaa Alignment from Exonerate_coding2genome attccaaccttttctcttccaggtctgatcgtgttaactttctgtcccagctttaaagtgtttgtggatcatgaggagtatattaaatgtcaggataaagtcagtggattatataatgtgagttagtattcaataaccagggacggggtaaacccactgctcttcaa Alignment from GeneWise GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG attccaaccttttctcttccaggtctgatcgtgttaactttctgtcccagCTTTAAAGTGTTTGTGGATCATGAGGAGTATATTAAATGTCAGGATAAAGTCAGTGGATTATATAATgtgagttagtattcaataaccagggacggggtaaacccactgctcttcaa #### Pyroxd2_ID8601_7 --> 2 - 0 Original Alignment ggCGCACCCTGGGAGCCCAGCTTCCCCAATATTATGAGGTCCTCACAGCCCCCATTTCCAAG acgcgaagttattatgaattcaactggtccatgtctgtctcttccctcagcaCACACTCTGGGAGCCCAGCTTACACAGCCTTATGAAGTACTTACAGCCTCCATATCCAAGgtattatactcactcagtgtgacatgggtgctagatgttgaattttgttt Alignment from CESAR ggCGCACCCTGGGAGCCCAGCTTCCCCAATATTATGAGGTCCTCACAGCCCCCATTTCCAAG acgcgaagttattatgaattcaactggtccatgtctgtctcttccctcagcaCACACTCTGGGAGCCCAGCTTACACAGCCTTATGAAGTACTTACAGCCTCCATATCCAAGgtattatactcactcagtgtgacatgggtgctacctacagcctttctcct Alignment from Spaln_aa2Genome GGCGCACCCTGGGAGCCCAGCTTCCCCAATATTATGAGGTCCTCACAGCCCCCATTTCCAAG acgcgaagttattatgaattcaactggtccatgtctgtctcttccctcagCACACACTCTGGGAGCCCAGCTTACACAGCCTTATGAAGTACTTACAGCCTCCATATCCAAGgtattatactcactcagtgtgacatgggtgctagatgttgaattttgttt Alignment from Spaln_nt2Genome GGCGCACCCTGGGAGCCCAGCTTCCCCAATATTATGAGGTCCTCACAGCCCCCATTTCCAAG acgcgaagttattatgaattcaactggtccatgtctgtctcttccctcagCACACACTCTGGGAGCCCAGCTTACACAGCCTTATGAAGTACTTACAGCCTCCATATCCAAGgtattatactcactcagtgtgacatgggtgctagatgttgaattttgttt Alignment from Pairagon GGCGCACCCTGGGAGCCCAGCTTCCCCAATATTATGAGGTCCTCACAGCCCCCATTTCCAAG acgcgaagttattatgaattcaactggtccatgtctgtctcttccctcagCACACACTCTGGGAGCCCAGCTTACACAGCCTTATGAAGTACTTACAGCCTCCATATCCAAGgtattatactcactcagtgtgacatgggtgctagatgttgaattttgttt Alignment from Exonerate_protein2genome GGCGCACCCTGGGAGCCCAGCTTCCCCAATATTATGAGGTCCTCACAGCCCCCATTTCCAAG acgcgaagttattatgaattcaactggtccatgtctgtctcttccctcagCACACACTCTGGGAGCCCAGCTTACACAGCCTTATGAAGTACTTACAGCCTCCATATCCAAGgtattatactcactcagtgtgacatgggtgctagatgttgaattttgttt Alignment from Exonerate_coding2genome GGCGCACCCTGGGAGCCCAGCTTCCCCAATATTATGAGGTCCTCACAGCCCCCATTTCCAAG acgcgaagttattatgaattcaactggtccatgtctgtctcttccctcagCACACACTCTGGGAGCCCAGCTTACACAGCCTTATGAAGTACTTACAGCCTCCATATCCAAGgtattatactcactcagtgtgacatgggtgctagatgttgaattttgttt Alignment from GeneWise GGCGCACCCTGGGAGCCCAGCTTCCCCAATATTATGAGGTCCTCACAGCCCCCATTTCCAAG acgcgaagttattatgaattcaactggtccatgtctgtctcttccctcagCACACACTCTGGGAGCCCAGCTTACACAGCCTTATGAAGTACTTACAGCCTCCATATCCAAGgtattatactcactcagtgtgacatgggtgctagatgttgaattttgttt #### Pyroxd2_ID8605_3 --> 0 - 1 Original Alignment GCAGCGTACCTCCAGAGACTGGGGGTGAACACCGCGGTCTTCGAGAGGCGCCATGTGATTGGGGGCGCAGCTGTCACGGAGGAGATCATTCCTg aagtcatcattactattgtagtgcttctgatgtttgcttttaacctccagGCAGCAGACCTCCAGAGACTGCAGGTGAATACTGCAGTCTTTGAGAGACGTCAAGTCCTTGGGGGTGCAGCTGTGACAGAAGAGATCATTCCCggtaagccccaacaaaagcgtggggtacaatacgagcatttagcgctactt Alignment from CESAR GCAGCGTACCTCCAGAGACTGGGGGTGAACACCGCGGTCTTCGAGAGGCGCCATGTGATTGGGGGCGCAGCTGTCACGGAGGAGATCATTCCTg aagtcatcattactattgtagtgcttctgatgtttgcttttaacctccagGCAGCAGACCTCCAGAGACTGCAGGTGAATACTGCAGTCTTTGAGAGACGTCAAGTCCTTGGGGGTGCAGCTGTGACAGAAGAGATCATTCCCggtaagccccaacaaaagcgtggggtacaatacgagcatttagcgctactt Alignment from Spaln_aa2Genome GCAGCGTACCTCCAGAGACTGGGGGTGAACACCGCGGTCTTCGAGAGGCGCCATGTGATTGGGGGCGCAGCTGTCACGGAGGAGATCATTCCTGGG-- aagtcatcattactattgtagtgcttctgatgtttgcttttaacctccagGCAGCAGACCTCCAGAGACTGCAGGTGAATACTGCAGTCTTTGAGAGACGTCAAGTCCTTGGGGGTGCAGCTGTGACAGAAGAGATCATTCCCGGTAAgccccaacaaaagcgtggggtacaatacgagcatttagcgctactt Alignment from Spaln_nt2Genome GCAGCGTACCTCCAGAGACTGGGGGTGAACACCGCGGTCTTCGAGAGGCGCCATGTGATTGGGGGCGCAGCTGTCACGGAGGAGATCATTCCTG aagtcatcattactattgtagtgcttctgatgtttgcttttaacctccagGCAGCAGACCTCCAGAGACTGCAGGTGAATACTGCAGTCTTTGAGAGACGTCAAGTCCTTGGGGGTGCAGCTGTGACAGAAGAGATCATTCCCGgtaagccccaacaaaagcgtggggtacaatacgagcatttagcgctactt Alignment from Pairagon GCAGCGTACCTCCAGAGACTGGGGGTGAACACCGCGGTCTTCGAGAGGCGCCATGTGATTGGGGGCGCAGCTGTCACGGAGGAGATCATTCCTG aagtcatcattactattgtagtgcttctgatgtttgcttttaacctccagGCAGCAGACCTCCAGAGACTGCAGGTGAATACTGCAGTCTTTGAGAGACGTCAAGTCCTTGGGGGTGCAGCTGTGACAGAAGAGATCATTCCCGgtaagccccaacaaaagcgtggggtacaatacgagcatttagcgctactt Alignment from Exonerate_protein2genome GCAGCGTACCTCCAGAGACTGGGGGTGAACACCGCGGTCTTCGAGAGGCGCCATGTGATTGGGGGCGCAGCTGTCACGGAGGAGATCATTCCTG aagtcatcattactattgtagtgcttctgatgtttgcttttaacctccagGCAGCAGACCTCCAGAGACTGCAGGTGAATACTGCAGTCTTTGAGAGACGTCAAGTCCTTGGGGGTGCAGCTGTGACAGAAGAGATCATTCCCGgtaagccccaacaaaagcgtggggtacaatacgagcatttagcgctactt Alignment from Exonerate_coding2genome aagtcatcattactattgtagtgcttctgatgtttgcttttaacctccaggcagcagacctccagagactgcaggtgaatactgcagtctttgagagacgtcaagtccttgggggtgcagctgtgacagaagagatcattcccggtaagccccaacaaaagcgtggggtacaatacgagcatttagcgctactt Alignment from GeneWise ACCTCCAGAGACTGGGGGTGAACACCGCGGTCTTCGAGAGGCGCCATGTGATTGGGGGCGCAGCTGTCACGGAGGAGATCATTCCTGGG------------------------------------------------ aagtcatcattactattgtagtgcttctgatgtttgcttttaacctccaggcagcagACCTCCAGAGACTGCAGGTGAATACTGCAGTCTTTGAGAGACGTCAAGTCCTTGGGGGTGCAGCTGTGACAGAAGAGATCATTCCCGGTAAGCCCCAACAAAAGCGTGGGGTACAATACGAGCATTTAGCGCTACTT #### Pyroxd2_ID8606_2 --> 2 - 0 Original Alignment gaCACAATGGGCTGGTGGCT gagtaggactagtagctgtaggactatggatccttggggggggggggcaggaCACAATGGCTTAGTGGCTgtaaggatctcttgggtagcacttcaggggcctcaacagaataggccaag Alignment from CESAR gaCACAATGGGCTGGTGGCT gagtaggactagtagctgtaggactatggatccttggggggggggggcaggaCACAATGGCTTAGTGGCTgtaaggatctcttgggtagcacttcaggggcctcaacagaataggccaag Alignment from Spaln_aa2Genome GACACAATGGGCTGGTGGCT gagtaggactagtagctgtaggactatggatccttggggggggggggcagGACACAATGGCTTAGTGGCTgtaaggatctcttgggtagcacttcaggggcctcaacagaataggccaag Alignment from Spaln_nt2Genome GACACAATGGGCTGGTGGCT gagtaggactagtagctgtaggactatggatccttggggggggggggcagGACACAATGGCTTAGTGGCTgtaaggatctcttgggtagcacttcaggggcctcaacagaataggccaag Alignment from Pairagon GACACAATGGGCTGGTGGCT gagtaggactagtagctgtaggactatggatccttggggggggggggcagGACACAATGGCTTAGTGGCTgtaaggatctcttgggtagcacttcaggggcctcaacagaataggccaag Alignment from Exonerate_protein2genome GACACAATGGGCTGGTGGCT gagtaggactagtagctgtaggactatggatccttggggggggggggcagGACACAATGGCTTAGTGGCTgtaaggatctcttgggtagcacttcaggggcctcaacagaataggccaag Alignment from Exonerate_coding2genome gagtaggactagtagctgtaggactatggatccttggggggggggggcaggacacaatggcttagtggctgtaaggatctcttgggtagcacttcaggggcctcaacagaataggccaag Alignment from GeneWise gagtaggactagtagctgtaggactatggatccttggggggggggggcaggacacaatggcttagtggctgtaaggatctcttgggtagcacttcaggggcctcaacagaataggccaag #### R3hcc1l_ID8550_4 --> 2 - 1 Original Alignment ctCGCGATGCCCTGGGTACTAAACATACCATGGTGAAGATCCGGCCC---TTGTCACAGGCCACAAGAGCAGCCAAGGCCAAAGCTAGAGCGTGTGCTg gccccaaactcaatgcgcagtattaaatttgggtcttttgcaccctgcagcaCATGATGCCCTGGGCACTATCCATACTAAGGTAAAGATTCAGACATTGTTGACACAGGCCACAAGAGCATCCAAGGCCAAGGCTAGG---TGTGCTggtaggtatgagccttctatgcactggtccctttattagttggtgatgatg Alignment from CESAR ctCGCGATGCCCTGGGTACTAAACATACCATGGTGAAGATCCGGCCC---TTGTCACAGGCCACAAGAGCAGCCAAGGCCAAAGCTAGAGCGTGTGCTg gccccaaactcaatgcgcagtattaaatttgggtcttttgcaccctgcagcaCATGATGCCCTGGGCACTATCCATACTAAGGTAAAGATTCAGACATTGTTGACACAGGCCACAAGAGCATCCAAGGCCAAGGCTAGG---TGTGCTggtaggtatgagccttctatgcactggtccctttattagttggtgatgatg Alignment from Spaln_aa2Genome CTCGCGATGCCCTGGGTACTAAACATACCATGGTGAAGATCCGGCCC---TTGTCACAGGCCACAAGAGCAGCCAAGGCCAAAGCTAGAGCGTGTGCTG gccccaaactcaatgcgcagtattaaatttgggtcttttgcaccctgcagCACATGATGCCCTGGGCACTATCCATACTAAGGTAAAGATTCAGACATTGTTGACACAGGCCACAAGAGCATCCAAGGCCAAGGCTAGG---TGTGCTGgtaggtatgagccttctatgcactggtccctttattagttggtgatgatg Alignment from Spaln_nt2Genome CTCGCGATGCCCTGGGTACTAAACATACCATGGTGAAGATCCGGCCCTTGT---CACAGGCCACAAGAGCAGCCAAGGCCAAAGCTAGAGCGTGTGCTG gccccaaactcaatgcgcagtattaaatttgggtcttttgcaccctgcagCACATGATGCCCTGGGCACTATCCATACTAAGGTAAAGATTCAGACATTGTTGACACAGGCCACAAGAGCATCCAAGGCCAAGGCTAG---GTGTGCTGgtaggtatgagccttctatgcactggtccctttattagttggtgatgatg Alignment from Pairagon CTCGCGATGCCCTGGGTACTAAACATACCATGGTGAAGATCCGGCCCTTGT---CACAGGCCACAAGAGCAGCCAAGGCCAAAGCTAGAGCGTGTGCTG gccccaaactcaatgcgcagtattaaatttgggtcttttgcaccctgcagCACATGATGCCCTGGGCACTATCCATACTAAGGTAAAGATTCAGACATTGTTGACACAGGCCACAAGAGCATCCAAGGCCAAGGCTAG---GTGTGCTGgtaggtatgagccttctatgcactggtccctttattagttggtgatgatg Alignment from Exonerate_protein2genome CTCGCGATGCCCTGGGTACTAAACATACCATGGTGAAGATCCGGCCC---TTGTCACAGGCCACAAGAGCAGCCAAGGCCAAAGCTAGAGCGTGTG gccccaaactcaatgcgcagtattaaatttgggtcttttgcaccctgcagCACATGATGCCCTGGGCACTATCCATACTAAGGTAAAGATTCAGACATTGTTGACACAGGCCACAAGAGCATCCAAGGCCAAGGCTAGGTGTGCTGgtaggtatgagccttctatgcactggtccctttattagttggtgatgatg Alignment from Exonerate_coding2genome CTCGCGATGCCCTGGGTACTAAACATACCATGGTGAAGATCCGGCCC---TTGTCACAGGCCACAAGAGCAGCCAAGGCCAAAGCTAGAGCGTGTG gccccaaactcaatgcgcagtattaaatttgggtcttttgcaccctgcagCACATGATGCCCTGGGCACTATCCATACTAAGGTAAAGATTCAGACATTGTTGACACAGGCCACAAGAGCATCCAAGGCCAAGGCTAGGTGTGCTGgtaggtatgagccttctatgcactggtccctttattagttggtgatgatg Alignment from GeneWise CTCGCGATGCCCTGGGTACTAAACATACCATGGTGAAGATCCGGCCCTTG---TCACAGGCCACAAGAGCAGCCAAGGCCAAAGCTAGAGCGTGTGCTG gccccaaactcaatgcgcagtattaaatttgggtcttttgcaccctgcagCACATGATGCCCTGGGCACTATCCATACTAAGGTAAAGATTCAGACATTGTTGACACAGGCCACAAGAGCATCCAAGGCCAAGGCTAGG---TGTGCTGgtaggtatgagccttctatgcactggtccctttattagttggtgatgatg #### Rab1b_ID845_3 --> 0 - 0 Original Alignment GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccagatcttggtttgtttcccactcagggttctcgtttcctccttccagGATGATACTTACACAGAGAGCTACATCAGCACCATTGGTGTTGATTTTAAGATACGAACAATTAAGCTGGATGGCAAAACCATCAAACTGCAGATTgtaagctctaatctgatcctgtatcttgtggctgttttttattctatttt Alignment from CESAR GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccagatcttggtttgtttcccactcagggttctcgtttcctccttccagGATGATACTTACACAGAGAGCTACATCAGCACCATTGGTGTTGATTTTAAGATACGAACAATTAAGCTGGATGGCAAAACCATCAAACTGCAGATTgtaagctctaatctgatcctgtatcttgtggctgctcagagcttctgtct Alignment from Spaln_aa2Genome GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccagatcttggtttgtttcccactcagggttctcgtttcctccttccagGATGATACTTACACAGAGAGCTACATCAGCACCATTGGTGTTGATTTTAAGATACGAACAATTAAGCTGGATGGCAAAACCATCAAACTGCAGATTgtaagctctaatctgatcctgtatcttgtggctgttttttattctatttt Alignment from Spaln_nt2Genome GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccagatcttggtttgtttcccactcagggttctcgtttcctccttccagGATGATACTTACACAGAGAGCTACATCAGCACCATTGGTGTTGATTTTAAGATACGAACAATTAAGCTGGATGGCAAAACCATCAAACTGCAGATTgtaagctctaatctgatcctgtatcttgtggctgttttttattctatttt Alignment from Pairagon GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccagatcttggtttgtttcccactcagggttctcgtttcctccttccagGATGATACTTACACAGAGAGCTACATCAGCACCATTGGTGTTGATTTTAAGATACGAACAATTAAGCTGGATGGCAAAACCATCAAACTGCAGATTgtaagctctaatctgatcctgtatcttgtggctgttttttattctatttt Alignment from Exonerate_protein2genome GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccagatcttggtttgtttcccactcagggttctcgtttcctccttccagGATGATACTTACACAGAGAGCTACATCAGCACCATTGGTGTTGATTTTAAGATACGAACAATTAAGCTGGATGGCAAAACCATCAAACTGCAGATTgtaagctctaatctgatcctgtatcttgtggctgttttttattctatttt Alignment from Exonerate_coding2genome CTGCTCCTGCGGTTTGCTGATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccagatcttggtttgtttcccactcagggttCTCGTTTCCTCCTTCCAGGATGATACTTACACAGAGAGCTACATCAGCACCATTGGTGTTGATTTTAAGATACGAACAATTAAGCTGGATGGCAAAACCATCAAACTGCAGATTgtaagctctaatctgatcctgtatcttgtggctgttttttattctatttt Alignment from GeneWise GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccagatcttggtttgtttcccactcagggttctcgtttcctccttccagGATGATACTTACACAGAGAGCTACATCAGCACCATTGGTGTTGATTTTAAGATACGAACAATTAAGCTGGATGGCAAAACCATCAAACTGCAGATTgtaagctctaatctgatcctgtatcttgtggctgttttttattctatttt #### Rab3il1_ID2646_2 --> 1 - 0 Original Alignment cCAACCCCAACAAGACGAGGGCCTCCCTGTGGGCCTCTCTGCTATCCCAGTCCCCTGGAAAAACCTAGGCCCCAGCAAAAGTAACAGGGAGTCCTCAGGAGGCCTGGTAGAAGCCTCCACTTCCTGGGAGGAGGCCCAGGGTGAGGAACACCCGGCACCTGCTCCACTGGATGTGTCACGCCTGCGCAGTTCCTCCATGGAGATCCGAGAGAAGGGCTCCGAGTTCCTAAAGGAGGAGCTATACAAAGCCCAGAAG taatattccaacccatataggcggcatactatcatatcaaatgttcttagcCAACCCCAACAGGATGAAGGCCTACCTGTGGGCATCTCTGGCATCCCAGTCCCATGGAAAACTTTAGGCCCCAGCAAGAGTAACCGGGAATCCTCAGGTGGTTTAGTAGAAGCTTCTACTTCCTGGGAAGATGCCCAGGGTGAGGAACACTTGACACCCGCTCCCCTGGATGTCTCACGCCTACATAGTTCATCAATGGAAATCCGAGAGGAGGGTTTGGAGTTCCTAAAGGAGGAATTATACAGAGCTCAAAAGgtgaacaccctagctccaagggaatgccctaggaaatcatcagtgctgac Alignment from CESAR cCAACCCCAACAAGACGAGGGCCTCCCTGTGGGCCTCTCTGCTATCCCAGTCCCCTGGAAAAACCTAGGCCCCAGCAAAAGTAACAGGGAGTCCTCAGGAGGCCTGGTAGAAGCCTCCACTTCCTGGGAGGAGGCCCAGGGTGAGGAACACCCGGCACCTGCTCCACTGGATGTGTCACGCCTGCGCAGTTCCTCCATGGAGATCCGAGAGAAGGGCTCCGAGTTCCTAAAGGAGGAGCTATACAAAGCCCAGAAG taatattccaacccatataggcggcatactatcatatcaaatgttcttagcCAACCCCAACAGGATGAAGGCCTACCTGTGGGCATCTCTGGCATCCCAGTCCCATGGAAAACTTTAGGCCCCAGCAAGAGTAACCGGGAATCCTCAGGTGGTTTAGTAGAAGCTTCTACTTCCTGGGAAGATGCCCAGGGTGAGGAACACTTGACACCCGCTCCCCTGGATGTCTCACGCCTACATAGTTCATCAATGGAAATCCGAGAGGAGGGTTTGGAGTTCCTAAAGGAGGAATTATACAGAGCTCAAAAGgtgaacaccctagctccaagggaatgccctaggaaatcatcagtgctgac Alignment from Spaln_aa2Genome CCAACCCCAACAAGACGAGGGCCTCCCTGTGGGCCTCTCTGCTATCCCAGTCCCCTGGAAAAACCTAGGCCCCAGCAAAAGTAACAGGGAGTCCTCAGGAGGCCTGGTAGAAGCCTCCACTTCCTGGGAGGAGGCCCAGGGTGAGGAACACCCGGCACCTGCTCCACTGGATGTGTCACGCCTGCGCAGTTCCTCCATGGAGATCCGAGAGAAGGGCTCCGAGTTCCTAAAGGAGGAGCTATACAAAGCCCAGAAG taatattccaacccatataggcggcatactatcatatcaaatgttcttagCCAACCCCAACAGGATGAAGGCCTACCTGTGGGCATCTCTGGCATCCCAGTCCCATGGAAAACTTTAGGCCCCAGCAAGAGTAACCGGGAATCCTCAGGTGGTTTAGTAGAAGCTTCTACTTCCTGGGAAGATGCCCAGGGTGAGGAACACTTGACACCCGCTCCCCTGGATGTCTCACGCCTACATAGTTCATCAATGGAAATCCGAGAGGAGGGTTTGGAGTTCCTAAAGGAGGAATTATACAGAGCTCAAAAGgtgaacaccctagctccaagggaatgccctaggaaatcatcagtgctgac Alignment from Spaln_nt2Genome CCAACCCCAACAAGACGAGGGCCTCCCTGTGGGCCTCTCTGCTATCCCAGTCCCCTGGAAAAACCTAGGCCCCAGCAAAAGTAACAGGGAGTCCTCAGGAGGCCTGGTAGAAGCCTCCACTTCCTGGGAGGAGGCCCAGGGTGAGGAACACCCGGCACCTGCTCCACTGGATGTGTCACGCCTGCGCAGTTCCTCCATGGAGATCCGAGAGAAGGGCTCCGAGTTCCTAAAGGAGGAGCTATACAAAGCCCAGAAG taatattccaacccatataggcggcatactatcatatcaaatgttcttagCCAACCCCAACAGGATGAAGGCCTACCTGTGGGCATCTCTGGCATCCCAGTCCCATGGAAAACTTTAGGCCCCAGCAAGAGTAACCGGGAATCCTCAGGTGGTTTAGTAGAAGCTTCTACTTCCTGGGAAGATGCCCAGGGTGAGGAACACTTGACACCCGCTCCCCTGGATGTCTCACGCCTACATAGTTCATCAATGGAAATCCGAGAGGAGGGTTTGGAGTTCCTAAAGGAGGAATTATACAGAGCTCAAAAGgtgaacaccctagctccaagggaatgccctaggaaatcatcagtgctgac Alignment from Pairagon CCAACCCCAACAAGACGAGGGCCTCCCTGTGGGCCTCTCTGCTATCCCAGTCCCCTGGAAAAACCTAGGCCCCAGCAAAAGTAACAGGGAGTCCTCAGGAGGCCTGGTAGAAGCCTCCACTTCCTGGGAGGAGGCCCAGGGTGAGGAACACCCGGCACCTGCTCCACTGGATGTGTCACGCCTGCGCAGTTCCTCCATGGAGATCCGAGAGAAGGGCTCCGAGTTCCTAAAGGAGGAGCTATACAAAGCCCAGAAG taatattccaacccatataggcggcatactatcatatcaaatgttcttagCCAACCCCAACAGGATGAAGGCCTACCTGTGGGCATCTCTGGCATCCCAGTCCCATGGAAAACTTTAGGCCCCAGCAAGAGTAACCGGGAATCCTCAGGTGGTTTAGTAGAAGCTTCTACTTCCTGGGAAGATGCCCAGGGTGAGGAACACTTGACACCCGCTCCCCTGGATGTCTCACGCCTACATAGTTCATCAATGGAAATCCGAGAGGAGGGTTTGGAGTTCCTAAAGGAGGAATTATACAGAGCTCAAAAGgtgaacaccctagctccaagggaatgccctaggaaatcatcagtgctgac Alignment from Exonerate_protein2genome GGCCAACCCCAACAAGACGAGGGCCTCCCTGTGGGCCTCTCTGCTATCCCAGTCCCCTGGAAAAACCTAGGCCCCAGCAAAAGTAACAGGGAGTCCTCAGGAGGCCTGGTAGAAGCCTCCACTTCCTGGGAGGAGGCCCAGGGTGAGGAACACCCGGCACCTGCTCCACTGGATGTGTCACGCCTGCGCAGTTCCTCCATGGAGATCCGAGAGAAGGGCTCCGAGTTCCTAAAGGAGGAGCTATACAAAGCCCAGAAG taatattccaacccatataggcggcatactatcatatcaaatgttcttAGCCAACCCCAACAGGATGAAGGCCTACCTGTGGGCATCTCTGGCATCCCAGTCCCATGGAAAACTTTAGGCCCCAGCAAGAGTAACCGGGAATCCTCAGGTGGTTTAGTAGAAGCTTCTACTTCCTGGGAAGATGCCCAGGGTGAGGAACACTTGACACCCGCTCCCCTGGATGTCTCACGCCTACATAGTTCATCAATGGAAATCCGAGAGGAGGGTTTGGAGTTCCTAAAGGAGGAATTATACAGAGCTCAAAAGgtgaacaccctagctccaagggaatgccctaggaaatcatcagtgctgac Alignment from Exonerate_coding2genome GGCCAACCCCAACAAGACGAGGGCCTCCCTGTGGGCCTCTCTGCTATCCCAGTCCCCTGGAAAAACCTAGGCCCCAGCAAAAGTAACAGGGAGTCCTCAGGAGGCCTGGTAGAAGCCTCCACTTCCTGGGAGGAGGCCCAGGGTGAGGAACACCCGGCACCTGCTCCACTGGATGTGTCACGCCTGCGCAGTTCCTCCATGGAGATCCGAGAGAAGGGCTCCGAGTTCCTAAAGGAGGAGCTATACAAAGCCCAGAAG taatattccaacccatataggcggcatactatcatatcaaatgttcttAGCCAACCCCAACAGGATGAAGGCCTACCTGTGGGCATCTCTGGCATCCCAGTCCCATGGAAAACTTTAGGCCCCAGCAAGAGTAACCGGGAATCCTCAGGTGGTTTAGTAGAAGCTTCTACTTCCTGGGAAGATGCCCAGGGTGAGGAACACTTGACACCCGCTCCCCTGGATGTCTCACGCCTACATAGTTCATCAATGGAAATCCGAGAGGAGGGTTTGGAGTTCCTAAAGGAGGAATTATACAGAGCTCAAAAGgtgaacaccctagctccaagggaatgccctaggaaatcatcagtgctgac Alignment from GeneWise TGGAGCGGCCAACCCCAACAAGACGAGGGCCTCCCTGTGGGCCTCTCTGCTATCCCAGTCCCCTGGAAAAACCTAGGCCCCAGCAAAAGTAACAGGGAGTCCTCAGGAGGCCTGGTAGAAGCCTCCACTTCCTGGGAGGAGGCCCAGGGTGAGGAACACCCGGCACCTGCTCCACTGGATGTGTCACGCCTGCGCAGTTCCTCCATGGAGATCCGAGAGAAGGGCTCCGAGTTCCTAAAGGAGGAGCTATACAAAGCCCAGAAG tccaacccatataggcggcatactatcatatcaaatgttctt------AGCCAACCCCAACAGGATGAAGGCCTACCTGTGGGCATCTCTGGCATCCCAGTCCCATGGAAAACTTTAGGCCCCAGCAAGAGTAACCGGGAATCCTCAGGTGGTTTAGTAGAAGCTTCTACTTCCTGGGAAGATGCCCAGGGTGAGGAACACTTGACACCCGCTCCCCTGGATGTCTCACGCCTACATAGTTCATCAATGGAAATCCGAGAGGAGGGTTTGGAGTTCCTAAAGGAGGAATTATACAGAGCTCAAAAGgtgaacaccctagctccaagggaatgccctaggaaatcatcagtgctgac #### Rab3il1_ID2652_7 --> 0 - 2 Original Alignment CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCaa tcttgtagtggtctgtcaccctcttaagtgtctgctctctttcccattagCTATCAGCTTTGGTTCAAACTGCTGTAGAAGACAATACACTCACTATTGAGCCTGTTGCTTCACAGACACTGCCTGCAGTGAAGGTACCTAGTATTGAGTGTAACAACACCaagtaagatcacactcccaatactcccatgcctccgaaaggctcaaaatttc Alignment from CESAR CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCaa tcttgtagtggtctgtcaccctcttaagtgtctgctctctttcccattagCTATCAGCTTTGGTTCAAACTGCTGTAGAAGACAATACACTCACTATTGAGCCTGTTGCTTCACAGACACTGCCTGCAGTGAAGGTACCTAGTATTGAGTGTAACAACACCaagtaagatcacactcccaatactcccatgcctccgaaaggctcaaaatttc Alignment from Spaln_aa2Genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tcttgtagtggtctgtcaccctcttaagtgtctgctctctttcccattagCTATCAGCTTTGGTTCAAACTGCTGTAGAAGACAATACACTCACTATTGAGCCTGTTGCTTCACAGACACTGCCTGCAGTGAAGGTACCTAGTATTGAGTGTAACAACACCAAgtaagatcacactcccaatactcccatgcctccgaaaggctcaaaatttc Alignment from Spaln_nt2Genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tcttgtagtggtctgtcaccctcttaagtgtctgctctctttcccattagCTATCAGCTTTGGTTCAAACTGCTGTAGAAGACAATACACTCACTATTGAGCCTGTTGCTTCACAGACACTGCCTGCAGTGAAGGTACCTAGTATTGAGTGTAACAACACCAAgtaagatcacactcccaatactcccatgcctccgaaaggctcaaaatttc Alignment from Pairagon CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tcttgtagtggtctgtcaccctcttaagtgtctgctctctttcccattagCTATCAGCTTTGGTTCAAACTGCTGTAGAAGACAATACACTCACTATTGAGCCTGTTGCTTCACAGACACTGCCTGCAGTGAAGGTACCTAGTATTGAGTGTAACAACACCAAgtaagatcacactcccaatactcccatgcctccgaaaggctcaaaatttc Alignment from Exonerate_protein2genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tcttgtagtggtctgtcaccctcttaagtgtctgctctctttcccattagCTATCAGCTTTGGTTCAAACTGCTGTAGAAGACAATACACTCACTATTGAGCCTGTTGCTTCACAGACACTGCCTGCAGTGAAGGTACCTAGTATTGAGTGTAACAACACCAAgtaagatcacactcccaatactcccatgcctccgaaaggctcaaaatttc Alignment from Exonerate_coding2genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tcttgtagtggtctgtcaccctcttaagtgtctgctctctttcccattagCTATCAGCTTTGGTTCAAACTGCTGTAGAAGACAATACACTCACTATTGAGCCTGTTGCTTCACAGACACTGCCTGCAGTGAAGGTACCTAGTATTGAGTGTAACAACACCAAgtaagatcacactcccaatactcccatgcctccgaaaggctcaaaatttc Alignment from GeneWise CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tcttgtagtggtctgtcaccctcttaagtgtctgctctctttcccattagCTATCAGCTTTGGTTCAAACTGCTGTAGAAGACAATACACTCACTATTGAGCCTGTTGCTTCACAGACACTGCCTGCAGTGAAGGTACCTAGTATTGAGTGTAACAACACCAAgtaagatcacactcccaatactcccatgcctccgaaaggctcaaaatttc #### Rasgrp2_ID1707_6 --> 0 - 0 Original Alignment TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agtgaaatccactgttaacagtttcacaatagcttcattttcctctgcagTTTCATGACTATCACAGTTTTGTCACACATGGATGCACTGTAGATAATCCAGTCCTGGAGCGATTTATCTCTCTCTTCAACAGTGTGCCTCAGTGGGTCCAGATAATGATCCTTAGCAAGCCAACAGCCACACAGCAGGCACTTGTCATTACTCACTTTGTACATGTAGCAGAGgtgagtacagttctgtcgtatgagaccagatcctttgttgaatgtacaga Alignment from CESAR TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agtgaaatccactgttaacagtttcacaatagcttcattttcctctgcagTTTCATGACTATCACAGTTTTGTCACACATGGATGCACTGTAGATAATCCAGTCCTGGAGCGATTTATCTCTCTCTTCAACAGTGTGCCTCAGTGGGTCCAGATAATGATCCTTAGCAAGCCAACAGCCACACAGCAGGCACTTGTCATTACTCACTTTGTACATGTAGCAGAGgtgagtacagttctgtcgtatgagaccagatcctttgttgaatgtacaga Alignment from Spaln_aa2Genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agtgaaatccactgttaacagtttcacaatagcttcattttcctctgcagTTTCATGACTATCACAGTTTTGTCACACATGGATGCACTGTAGATAATCCAGTCCTGGAGCGATTTATCTCTCTCTTCAACAGTGTGCCTCAGTGGGTCCAGATAATGATCCTTAGCAAGCCAACAGCCACACAGCAGGCACTTGTCATTACTCACTTTGTACATGTAGCAGAGgtgagtacagttctgtcgtatgagaccagatcctttgttgaatgtacaga Alignment from Spaln_nt2Genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agtgaaatccactgttaacagtttcacaatagcttcattttcctctgcagTTTCATGACTATCACAGTTTTGTCACACATGGATGCACTGTAGATAATCCAGTCCTGGAGCGATTTATCTCTCTCTTCAACAGTGTGCCTCAGTGGGTCCAGATAATGATCCTTAGCAAGCCAACAGCCACACAGCAGGCACTTGTCATTACTCACTTTGTACATGTAGCAGAGgtgagtacagttctgtcgtatgagaccagatcctttgttgaatgtacaga Alignment from Pairagon TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agtgaaatccactgttaacagtttcacaatagcttcattttcctctgcagTTTCATGACTATCACAGTTTTGTCACACATGGATGCACTGTAGATAATCCAGTCCTGGAGCGATTTATCTCTCTCTTCAACAGTGTGCCTCAGTGGGTCCAGATAATGATCCTTAGCAAGCCAACAGCCACACAGCAGGCACTTGTCATTACTCACTTTGTACATGTAGCAGAGgtgagtacagttctgtcgtatgagaccagatcctttgttgaatgtacaga Alignment from Exonerate_protein2genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agtgaaatccactgttaacagtttcacaatagcttcattttcctctgcagTTTCATGACTATCACAGTTTTGTCACACATGGATGCACTGTAGATAATCCAGTCCTGGAGCGATTTATCTCTCTCTTCAACAGTGTGCCTCAGTGGGTCCAGATAATGATCCTTAGCAAGCCAACAGCCACACAGCAGGCACTTGTCATTACTCACTTTGTACATGTAGCAGAGgtgagtacagttctgtcgtatgagaccagatcctttgttgaatgtacaga Alignment from Exonerate_coding2genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agtgaaatccactgttaacagtttcacaatagcttcattttcctctgcagTTTCATGACTATCACAGTTTTGTCACACATGGATGCACTGTAGATAATCCAGTCCTGGAGCGATTTATCTCTCTCTTCAACAGTGTGCCTCAGTGGGTCCAGATAATGATCCTTAGCAAGCCAACAGCCACACAGCAGGCACTTGTCATTACTCACTTTGTACATGTAGCAGAGgtgagtacagttctgtcgtatgagaccagatcctttgttgaatgtacaga Alignment from GeneWise TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agtgaaatccactgttaacagtttcacaatagcttcattttcctctgcagTTTCATGACTATCACAGTTTTGTCACACATGGATGCACTGTAGATAATCCAGTCCTGGAGCGATTTATCTCTCTCTTCAACAGTGTGCCTCAGTGGGTCCAGATAATGATCCTTAGCAAGCCAACAGCCACACAGCAGGCACTTGTCATTACTCACTTTGTACATGTAGCAGAGgtgagtacagttctgtcgtatgagaccagatcctttgttgaatgtacaga #### Rasgrp2_ID1708_7 --> 0 - 0 Original Alignment AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG aaggatgatctgtaatctaggggtaaggttcgctcttcctgctgtcctagAGGCTGCTCCAGCTGCAGAACTTCAACACATTCATGGCAGTTGTGGGAGGTCTGAGCCACAGCTCCACGTCCCGGCTCAAGGAGACTCATAGCCATGTCAGCCCTGACACCATTAAGgtacggagttctattgggcagtggttgaggattgagtgattggggagtga Alignment from CESAR AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG aaggatgatctgtaatctaggggtaaggttcgctcttcctgctgtcctagAGGCTGCTCCAGCTGCAGAACTTCAACACATTCATGGCAGTTGTGGGAGGTCTGAGCCACAGCTCCACGTCCCGGCTCAAGGAGACTCATAGCCATGTCAGCCCTGACACCATTAAGgtacggagttctattgggcagtggttgaggattgagtgattggggagtga Alignment from Spaln_aa2Genome AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG aaggatgatctgtaatctaggggtaaggttcgctcttcctgctgtcctagAGGCTGCTCCAGCTGCAGAACTTCAACACATTCATGGCAGTTGTGGGAGGTCTGAGCCACAGCTCCACGTCCCGGCTCAAGGAGACTCATAGCCATGTCAGCCCTGACACCATTAAGgtacggagttctattgggcagtggttgaggattgagtgattggggagtga Alignment from Spaln_nt2Genome AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG aaggatgatctgtaatctaggggtaaggttcgctcttcctgctgtcctagAGGCTGCTCCAGCTGCAGAACTTCAACACATTCATGGCAGTTGTGGGAGGTCTGAGCCACAGCTCCACGTCCCGGCTCAAGGAGACTCATAGCCATGTCAGCCCTGACACCATTAAGgtacggagttctattgggcagtggttgaggattgagtgattggggagtga Alignment from Pairagon AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG aaggatgatctgtaatctaggggtaaggttcgctcttcctgctgtcctagAGGCTGCTCCAGCTGCAGAACTTCAACACATTCATGGCAGTTGTGGGAGGTCTGAGCCACAGCTCCACGTCCCGGCTCAAGGAGACTCATAGCCATGTCAGCCCTGACACCATTAAGgtacggagttctattgggcagtggttgaggattgagtgattggggagtga Alignment from Exonerate_protein2genome AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG aaggatgatctgtaatctaggggtaaggttcgctcttcctgctgtcctagAGGCTGCTCCAGCTGCAGAACTTCAACACATTCATGGCAGTTGTGGGAGGTCTGAGCCACAGCTCCACGTCCCGGCTCAAGGAGACTCATAGCCATGTCAGCCCTGACACCATTAAGgtacggagttctattgggcagtggttgaggattgagtgattggggagtga Alignment from Exonerate_coding2genome AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG aaggatgatctgtaatctaggggtaaggttcgctcttcctgctgtcctagAGGCTGCTCCAGCTGCAGAACTTCAACACATTCATGGCAGTTGTGGGAGGTCTGAGCCACAGCTCCACGTCCCGGCTCAAGGAGACTCATAGCCATGTCAGCCCTGACACCATTAAGgtacggagttctattgggcagtggttgaggattgagtgattggggagtga Alignment from GeneWise AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG aaggatgatctgtaatctaggggtaaggttcgctcttcctgctgtcctagAGGCTGCTCCAGCTGCAGAACTTCAACACATTCATGGCAGTTGTGGGAGGTCTGAGCCACAGCTCCACGTCCCGGCTCAAGGAGACTCATAGCCATGTCAGCCCTGACACCATTAAGgtacggagttctattgggcagtggttgaggattgagtgattggggagtga #### Rasgrp2_ID1712_11 --> 0 - 2 Original Alignment TCTGTGTTCCGGAACTTTGACGTGGATGGGGACGGTCACATCTCCCAGGAGGAGTTTCAGATCATCCGGGGCAACTTCCCTTATCTCAGCGCCTTTGGGGACCTGGACCAGAACca ctggacattgtgatttgtttcaattcacaatcatgtcctttcctttatagTCTGTGTTTAGGAACTTTGATGTGGATGGGGATGGTCATATTTCCCAGGAGGAGTTTCAGATCATCCGGGGCAACTTTCCTTATCTAAGCACATTTGGGGACCTAGACCAGAACcagtatgaaatgatactaggaactggacttgttttggcccaacaggactcac Alignment from CESAR TCTGTGTTCCGGAACTTTGACGTGGATGGGGACGGTCACATCTCCCAGGAGGAGTTTCAGATCATCCGGGGCAACTTCCCTTATCTCAGCGCCTTTGGGGACCTGGACCAGAACca ctggacattgtgatttgtttcaattcacaatcatgtcctttcctttatagTCTGTGTTTAGGAACTTTGATGTGGATGGGGATGGTCATATTTCCCAGGAGGAGTTTCAGATCATCCGGGGCAACTTTCCTTATCTAAGCACATTTGGGGACCTAGACCAGAACcagtatgaaatgatactaggaactggacttgttttggcccaacaggactcac Alignment from Spaln_aa2Genome TCTGTGTTCCGGAACTTTGACGTGGATGGGGACGGTCACATCTCCCAGGAGGAGTTTCAGATCATCCGGGGCAACTTCCCTTATCTCAGCGCCTTTGGGGACCTGGACCAGAACCA ctggacattgtgatttgtttcaattcacaatcatgtcctttcctttatagTCTGTGTTTAGGAACTTTGATGTGGATGGGGATGGTCATATTTCCCAGGAGGAGTTTCAGATCATCCGGGGCAACTTTCCTTATCTAAGCACATTTGGGGACCTAGACCAGAACCAgtatgaaatgatactaggaactggacttgttttggcccaacaggactcac Alignment from Spaln_nt2Genome TCTGTGTTCCGGAACTTTGACGTGGATGGGGACGGTCACATCTCCCAGGAGGAGTTTCAGATCATCCGGGGCAACTTCCCTTATCTCAGCGCCTTTGGGGACCTGGACCAGAACCA ctggacattgtgatttgtttcaattcacaatcatgtcctttcctttatagTCTGTGTTTAGGAACTTTGATGTGGATGGGGATGGTCATATTTCCCAGGAGGAGTTTCAGATCATCCGGGGCAACTTTCCTTATCTAAGCACATTTGGGGACCTAGACCAGAACCAgtatgaaatgatactaggaactggacttgttttggcccaacaggactcac Alignment from Pairagon TCTGTGTTCCGGAACTTTGACGTGGATGGGGACGGTCACATCTCCCAGGAGGAGTTTCAGATCATCCGGGGCAACTTCCCTTATCTCAGCGCCTTTGGGGACCTGGACCAGAACCA ctggacattgtgatttgtttcaattcacaatcatgtcctttcctttatagTCTGTGTTTAGGAACTTTGATGTGGATGGGGATGGTCATATTTCCCAGGAGGAGTTTCAGATCATCCGGGGCAACTTTCCTTATCTAAGCACATTTGGGGACCTAGACCAGAACCAgtatgaaatgatactaggaactggacttgttttggcccaacaggactcac Alignment from Exonerate_protein2genome TCTGTGTTCCGGAACTTTGACGTGGATGGGGACGGTCACATCTCCCAGGAGGAGTTTCAGATCATCCGGGGCAACTTCCCTTATCTCAGCGCCTTTGGGGACCTGGACCAGAACCA ctggacattgtgatttgtttcaattcacaatcatgtcctttcctttatagTCTGTGTTTAGGAACTTTGATGTGGATGGGGATGGTCATATTTCCCAGGAGGAGTTTCAGATCATCCGGGGCAACTTTCCTTATCTAAGCACATTTGGGGACCTAGACCAGAACCAgtatgaaatgatactaggaactggacttgttttggcccaacaggactcac Alignment from Exonerate_coding2genome TCTGTGTTCCGGAACTTTGACGTGGATGGGGACGGTCACATCTCCCAGGAGGAGTTTCAGATCATCCGGGGCAACTTCCCTTATCTCAGCGCCTTTGGGGACCTGGACCAGAACCA ctggacattgtgatttgtttcaattcacaatcatgtcctttcctttatagTCTGTGTTTAGGAACTTTGATGTGGATGGGGATGGTCATATTTCCCAGGAGGAGTTTCAGATCATCCGGGGCAACTTTCCTTATCTAAGCACATTTGGGGACCTAGACCAGAACCAgtatgaaatgatactaggaactggacttgttttggcccaacaggactcac Alignment from GeneWise TCTGTGTTCCGGAACTTTGACGTGGATGGGGACGGTCACATCTCCCAGGAGGAGTTTCAGATCATCCGGGGCAACTTCCCTTATCTCAGCGCCTTTGGGGACCTGGACCAGAACCA ctggacattgtgatttgtttcaattcacaatcatgtcctttcctttatagTCTGTGTTTAGGAACTTTGATGTGGATGGGGATGGTCATATTTCCCAGGAGGAGTTTCAGATCATCCGGGGCAACTTTCCTTATCTAAGCACATTTGGGGACCTAGACCAGAACCAgtatgaaatgatactaggaactggacttgttttggcccaacaggactcac #### Rasgrp2_ID1715_14 --> 2 - 1 Original Alignment ctTGTGGTGTGAACTGCCACAAGCAATGCAAAGAGCGCCTGTCAGTGGAATGTCGCCGCAGGGCCCAGAGTGTCAGCCTGGAGGGCTCTGCACCCTCTCCCTCACCCACACATACCCACCATCGGGCCTTCAGCTTTTCCCTGCCTCGCCCAGGCAGGCGCAGCTCTCGGCCTCCAg ggtgttctctaggcgatgggcttgttatcttgatattccccttctcttagcaTGTGGGGTAAACTGTTATAAGCAGTGTAAGGAGCACTTGTCAGTGGAATGTCGTCGGAGAGCTCAGAGTGTCAGCCTAGAGGGTTCAGCACCTTCTCCCTCACCCACGCACACTCACCATCGGGCGTTCAGCTTCTCCTTGCCCCGACCTGGTCGGCGTAGTCCTCGACCTCCAggtaggcaagctattaggaaggtctctatgtgttttctatcacaatacctt Alignment from CESAR ctTGTGGTGTGAACTGCCACAAGCAATGCAAAGAGCGCCTGTCAGTGGAATGTCGCCGCAGGGCCCAGAGTGTCAGCCTGGAGGGCTCTGCACCCTCTCCCTCACCCACACATACCCACCATCGGGCCTTCAGCTTTTCCCTGCCTCGCCCAGGCAGGCGCAGCTCTCGGCCTCCAg ggtgttctctaggcgatgggcttgttatcttgatattccccttctcttagcaTGTGGGGTAAACTGTTATAAGCAGTGTAAGGAGCACTTGTCAGTGGAATGTCGTCGGAGAGCTCAGAGTGTCAGCCTAGAGGGTTCAGCACCTTCTCCCTCACCCACGCACACTCACCATCGGGCGTTCAGCTTCTCCTTGCCCCGACCTGGTCGGCGTAGTCCTCGACCTCCAggtaggcaagctattaggaaggtctctatgtgttttctatcacaatacctt Alignment from Spaln_aa2Genome CTTGTGGTGTGAACTGCCACAAGCAATGCAAAGAGCGCCTGTCAGTGGAATGTCGCCGCAGGGCCCAGAGTGTCAGCCTGGAGGGCTCTGCACCCTCTCCCTCACCCACACATACCCACCATCGGGCCTTCAGCTTTTCCCTGCCTCGCCCAGGCAGGCGCAGCTCTCGGCCTCCAG ggtgttctctaggcgatgggcttgttatcttgatattccccttctcttagCATGTGGGGTAAACTGTTATAAGCAGTGTAAGGAGCACTTGTCAGTGGAATGTCGTCGGAGAGCTCAGAGTGTCAGCCTAGAGGGTTCAGCACCTTCTCCCTCACCCACGCACACTCACCATCGGGCGTTCAGCTTCTCCTTGCCCCGACCTGGTCGGCGTAGTCCTCGACCTCCAGgtaggcaagctattaggaaggtctctatgtgttttctatcacaatacctt Alignment from Spaln_nt2Genome CTTGTGGTGTGAACTGCCACAAGCAATGCAAAGAGCGCCTGTCAGTGGAATGTCGCCGCAGGGCCCAGAGTGTCAGCCTGGAGGGCTCTGCACCCTCTCCCTCACCCACACATACCCACCATCGGGCCTTCAGCTTTTCCCTGCCTCGCCCAGGCAGGCGCAGCTCTCGGCCTCCAG ggtgttctctaggcgatgggcttgttatcttgatattccccttctcttagCATGTGGGGTAAACTGTTATAAGCAGTGTAAGGAGCACTTGTCAGTGGAATGTCGTCGGAGAGCTCAGAGTGTCAGCCTAGAGGGTTCAGCACCTTCTCCCTCACCCACGCACACTCACCATCGGGCGTTCAGCTTCTCCTTGCCCCGACCTGGTCGGCGTAGTCCTCGACCTCCAGgtaggcaagctattaggaaggtctctatgtgttttctatcacaatacctt Alignment from Pairagon CTTGTGGTGTGAACTGCCACAAGCAATGCAAAGAGCGCCTGTCAGTGGAATGTCGCCGCAGGGCCCAGAGTGTCAGCCTGGAGGGCTCTGCACCCTCTCCCTCACCCACACATACCCACCATCGGGCCTTCAGCTTTTCCCTGCCTCGCCCAGGCAGGCGCAGCTCTCGGCCTCCAG ggtgttctctaggcgatgggcttgttatcttgatattccccttctcttagCATGTGGGGTAAACTGTTATAAGCAGTGTAAGGAGCACTTGTCAGTGGAATGTCGTCGGAGAGCTCAGAGTGTCAGCCTAGAGGGTTCAGCACCTTCTCCCTCACCCACGCACACTCACCATCGGGCGTTCAGCTTCTCCTTGCCCCGACCTGGTCGGCGTAGTCCTCGACCTCCAGgtaggcaagctattaggaaggtctctatgtgttttctatcacaatacctt Alignment from Exonerate_protein2genome CTTGTGGTGTGAACTGCCACAAGCAATGCAAAGAGCGCCTGTCAGTGGAATGTCGCCGCAGGGCCCAGAGTGTCAGCCTGGAGGGCTCTGCACCCTCTCCCTCACCCACACATACCCACCATCGGGCCTTCAGCTTTTCCCTGCCTCGCCCAGGCAGGCGCAGCTCTCGGCCTCCAG ggtgttctctaggcgatgggcttgttatcttgatattccccttctcttagCATGTGGGGTAAACTGTTATAAGCAGTGTAAGGAGCACTTGTCAGTGGAATGTCGTCGGAGAGCTCAGAGTGTCAGCCTAGAGGGTTCAGCACCTTCTCCCTCACCCACGCACACTCACCATCGGGCGTTCAGCTTCTCCTTGCCCCGACCTGGTCGGCGTAGTCCTCGACCTCCAGgtaggcaagctattaggaaggtctctatgtgttttctatcacaatacctt Alignment from Exonerate_coding2genome CTTGTGGTGTGAACTGCCACAAGCAATGCAAAGAGCGCCTGTCAGTGGAATGTCGCCGCAGGGCCCAGAGTGTCAGCCTGGAGGGCTCTGCACCCTCTCCCTCACCCACACATACCCACCATCGGGCCTTCAGCTTTTCCCTGCCTCGCCCAGGCAGGCGCAGCTCTCGGCCTCCAG ggtgttctctaggcgatgggcttgttatcttgatattccccttctcttagCATGTGGGGTAAACTGTTATAAGCAGTGTAAGGAGCACTTGTCAGTGGAATGTCGTCGGAGAGCTCAGAGTGTCAGCCTAGAGGGTTCAGCACCTTCTCCCTCACCCACGCACACTCACCATCGGGCGTTCAGCTTCTCCTTGCCCCGACCTGGTCGGCGTAGTCCTCGACCTCCAGgtaggcaagctattaggaaggtctctatgtgttttctatcacaatacctt Alignment from GeneWise CTTGTGGTGTGAACTGCCACAAGCAATGCAAAGAGCGCCTGTCAGTGGAATGTCGCCGCAGGGCCCAGAGTGTCAGCCTGGAGGGCTCTGCACCCTCTCCCTCACCCACACATACCCACCATCGGGCCTTCAGCTTTTCCCTGCCTCGCCCAGGCAGGCGCAGCTCTCGGCCTCCAG ggtgttctctaggcgatgggcttgttatcttgatattccccttctcttagCATGTGGGGTAAACTGTTATAAGCAGTGTAAGGAGCACTTGTCAGTGGAATGTCGTCGGAGAGCTCAGAGTGTCAGCCTAGAGGGTTCAGCACCTTCTCCCTCACCCACGCACACTCACCATCGGGCGTTCAGCTTCTCCTTGCCCCGACCTGGTCGGCGTAGTCCTCGACCTCCAGgtaggcaagctattaggaaggtctctatgtgttttctatcacaatacctt #### Rbm14_ID653_2 --> 2 - 2 Original Alignment acTACGCGTTTGTTCACATGGAGAAGGAAGCAGATGCCAAAGCCGCCATCGCGCAGCTCAACGGCAAAGAAGTGAAGGGCAAGCGCATCAACGTGGAACTCTCAACCAAGGGGCAGAAGAAGGGGCCTGCCCTGGCTATCCAGTCTGGGGACAAGACCAAGAAACCAGGGGCTGGGGACACAGCATTCCCTGGAACTGGTGGCTTCTCTGCCACCTTCGACTACCAGCAGGCTTTTGGCAACAGCACTGGTGGCTTTGATGGGCAAGCCCGTCAGCCCACACCACCATTCTTTGGTCGCGACCGCAGCCCCCTGCGCCGTTCACCTCCTCGAGCCTCTTATGTGGCGCCTCTGACGGCCCAGCCAGCCACCTACCGGGCCCAACCCTCAGTGTCTCTGGGAGCTGCATATAGGGCCCAGCCTTCCGCCTCTTTGGGTGTTGGCTATCGGACTCAGCCCATGGCAGCTCAGGCAGCTTCTTACCGTGCTCAGCCCTCTGTCTCCCTTGGGGCCCCATACAGGGGTCAGCTGGCTAGCCCTAGTTCCCAGTCTGCTGCAGCTTCCTCGCTTGGCCCATATGGTGGAGTCCAGCCCTCAGCCTCAGCCCTTTCCACTTATGGGGGTCAGGCAGCTGCAGCTTCTTCGCTTAATTCCTATGGGGCTCAGGGCTCCTCCCTTGCTTCCTATGGTAACCAGCCATCCTCTTATGGCGCCCAGGCTGCCTCTTCGTATGGGGTTCGTGCGGCTGCTTCTTCCTATAACACACAAGGAGCAGCTTCTTCCCTAGGTTCCTATGGGGCTCAAGCAGCCTCCTATGGTGCCCAGTCTGCAGCCTCCTCACTAGCTTATGGAGCCCAGGCAGCGTCTTACAGTGCCCAGCCCTCAGCCTCTTACAGTGCCCAGTCTGCCCCATATGCTGCACAACAGGCTGCTTCTTATTCTTCCCAGCCTGCTGCTTATGTGGCACAACCAGCCACAGCTGCTGCCTATGCTAGCCAGCCAGCTGCCTATGCTGCACAAGCCACTACCCCAATGGCTGGTTCCTATGGGGCTCAACCAGTTGTTCAGACCCAGCTGAATAGCTATGGGGCTCAAGCATCTATTGGCCTGTCAGGCTCATATGGAGCTCAGTCTGCTGCTGCGGCCACTGGCTCCTATGGGGCGGCAGCTGCTTACGGGGCTCAGCCTTCTGCCACCCTGGCAGCTCCTTACCGCACTCAGTCATCAGCCTCATTGGCTGCTTCCTATGCTGCCCAGCAGCATCCCCAGGCTGCTGCCTCCTACCGTGGCCAGCCGGGCAGTGCCTACGATGGGACAGGCCAGCCATCAGCAGCCTACCTGTCTATGTCCCAGGGGGCCGTTGCCAACGCCAACAGCACCCCGCCGCCCTATGAGCGTACCCGCCTCTCCCCACCCCGGGCCAGCTACGACGATCCCTACAAAAAGGCTGTCGCCATGTCAAAAag ggttgtacctcacttgtaattggttgccctctctccctgtctccctgcagacTACGCGTTTATTCACATGGAGAAAGAAGCAGATGCCAAAGCCACCATTACACAGCTCAATGGTAAGGAAGTCAAGGGGAAACGCATTAATGTAGAACTCTCAACTAAGGGCCAGAGAAAAGGTCCAGCCCTGGCTATCCAGTCTGGTGACAAGACCAAGAAGCCAGGGGCTGGGGACACAGCATTCCCTGGAACTGGGGGAGATTCTGCCACCTTTGATTACCAGCAGGCTTTTGGCAATAGTACTGGTGGATTTGATGGACAAGTGCGCCAACCATCACCACCATTCTTTGGTCGTGATTGTAGTCCCCTACGCCGTTCCCCACATCGGGCATCATATGTGGCACCTCTGATGGCCCAGCCCGCAACTTACCGTGCTCAGCCTTCAGTGTCCTTGGGAGCAGCTTATAGGGCCCAACCCTCTGCGTCTTTGGGTGTTGACTATCGCTCACCCCCAATGGCAGCTCAGGCAGCTGCATATCGTGCCCAGCCCTCTCTCTCACTTAGGGCCCCATATAGGGGCCAGTTGGTAAGTCCTAGTTCTCAGTCTGCTGCTGCATCCTCACTTGGCCCATATGGTGGAGTCCAACCCACAGCCTCAGCTCTTTCCAATTTAGGAGGTCAGGCAGCTGCAGCCTCTTCACTTAACTCCTATGGAACCCTAGGCTCTTCACTTGCATCATATGGTAATCAGCCATCCTCTTATGGTGCCCAGGCTGCTTCATCATATGGTGTTCATGCAGATGCCTCCTCGTATAACACACAAGGAGCTGCCTCCTCCCTGGGGTCCTATGGGGCACAGGCAGCTTCTTATGGCGCTCATTCTGCAGCTTCCTCACTAGCTTATGGAGCCAAGGCTGCATCTTATAGTGCCCAGCCATCAGCCTCTTACAGTGCCCAGTCTGCCCCATATGCTGCCCAACATGCTGCCTCTCACTCCTCCCAGCCAGCTGCTTCTGTGGCACAACCAGCTGCAGCTACTGCCTATGCTAGCCAGCCGGCCACCTATGCAGCACGAGCAACTACTCCAATGGCTGGTTCTTATGGGGCCCAACCAGTTGTTCAGACACAATCTAATAGTTATGGGGCTCAACCATCCATTTGCCTGTCAGGTCCATATGGAGCTCAGGCTGCAGCTGCAGCTACTAGTTCCTATGGGGCAGCAGCTGCTTATGGGGCTCAGCCTTCAGCAACCTTTGTAACACCTTACCAAACACAGTCATCAACCTCCTTGGCTGCTTCCTATGCTGCACAGCAGTACCCCCAAGCTGCCGCCTCCTATCATGGCCAACCAGGGAGTGCCTATGATGGGACAGGGCAGCCATCAACAGCATACCTCTCTAAGTCCCAGGGAGCCATTGCCAACACCAATAGCGCTCCAACACCTTATGAGCGAACCCGGCTCTCCCCACCCCGGGCCAGCTATGATGATCCCTACAAAAAGGCTGTTGCAATGTCAAAGaggtgagtcacagctcacctcaaagctagacagtagataaacagcagctggg Alignment from CESAR acTACGCGTTTGTTCACATGGAGAAGGAAGCAGATGCCAAAGCCGCCATCGCGCAGCTCAACGGCAAAGAAGTGAAGGGCAAGCGCATCAACGTGGAACTCTCAACCAAGGGGCAGAAGAAGGGGCCTGCCCTGGCTATCCAGTCTGGGGACAAGACCAAGAAACCAGGGGCTGGGGACACAGCATTCCCTGGAACTGGTGGCTTCTCTGCCACCTTCGACTACCAGCAGGCTTTTGGCAACAGCACTGGTGGCTTTGATGGGCAAGCCCGTCAGCCCACACCACCATTCTTTGGTCGCGACCGCAGCCCCCTGCGCCGTTCACCTCCTCGAGCCTCTTATGTGGCGCCTCTGACGGCCCAGCCAGCCACCTACCGGGCCCAACCCTCAGTGTCTCTGGGAGCTGCATATAGGGCCCAGCCTTCCGCCTCTTTGGGTGTTGGCTATCGGACTCAGCCCATGGCAGCTCAGGCAGCTTCTTACCGTGCTCAGCCCTCTGTCTCCCTTGGGGCCCCATACAGGGGTCAGCTGGCTAGCCCTAGTTCCCAGTCTGCTGCAGCTTCCTCGCTTGGCCCATATGGTGGAGTCCAGCCCTCAGCCTCAGCCCTTTCCACTTATGGGGGTCAGGCAGCTGCAGCTTCTTCGCTTAATTCCTATGGGGCTCAGGGCTCCTCCCTTGCTTCCTATGGTAACCAGCCATCCTCTTATGGCGCCCAGGCTGCCTCTTCGTATGGGGTTCGTGCGGCTGCTTCTTCCTATAACACACAAGGAGCAGCTTCTTCCCTAGGTTCCTATGGGGCTCAAGCAGCCTCCTATGGTGCCCAGTCTGCAGCCTCCTCACTAGCTTATGGAGCCCAGGCAGCGTCTTACAGTGCCCAGCCCTCAGCCTCTTACAGTGCCCAGTCTGCCCCATATGCTGCACAACAGGCTGCTTCTTATTCTTCCCAGCCTGCTGCTTATGTGGCACAACCAGCCACAGCTGCTGCCTATGCTAGCCAGCCAGCTGCCTATGCTGCACAAGCCACTACCCCAATGGCTGGTTCCTATGGGGCTCAACCAGTTGTTCAGACCCAGCTGAATAGCTATGGGGCTCAAGCATCTATTGGCCTGTCAGGCTCATATGGAGCTCAGTCTGCTGCTGCGGCCACTGGCTCCTATGGGGCGGCAGCTGCTTACGGGGCTCAGCCTTCTGCCACCCTGGCAGCTCCTTACCGCACTCAGTCATCAGCCTCATTGGCTGCTTCCTATGCTGCCCAGCAGCATCCCCAGGCTGCTGCCTCCTACCGTGGCCAGCCGGGCAGTGCCTACGATGGGACAGGCCAGCCATCAGCAGCCTACCTGTCTATGTCCCAGGGGGCCGTTGCCAACGCCAACAGCACCCCGCCGCCCTATGAGCGTACCCGCCTCTCCCCACCCCGGGCCAGCTACGACGATCCCTACAAAAAGGCTGTCGCCATGTCAAAAag ggttgtacctcacttgtaattggttgccctctctccctgtctccctgcagacTACGCGTTTATTCACATGGAGAAAGAAGCAGATGCCAAAGCCACCATTACACAGCTCAATGGTAAGGAAGTCAAGGGGAAACGCATTAATGTAGAACTCTCAACTAAGGGCCAGAGAAAAGGTCCAGCCCTGGCTATCCAGTCTGGTGACAAGACCAAGAAGCCAGGGGCTGGGGACACAGCATTCCCTGGAACTGGGGGAGATTCTGCCACCTTTGATTACCAGCAGGCTTTTGGCAATAGTACTGGTGGATTTGATGGACAAGTGCGCCAACCATCACCACCATTCTTTGGTCGTGATTGTAGTCCCCTACGCCGTTCCCCACATCGGGCATCATATGTGGCACCTCTGATGGCCCAGCCCGCAACTTACCGTGCTCAGCCTTCAGTGTCCTTGGGAGCAGCTTATAGGGCCCAACCCTCTGCGTCTTTGGGTGTTGACTATCGCTCACCCCCAATGGCAGCTCAGGCAGCTGCATATCGTGCCCAGCCCTCTCTCTCACTTAGGGCCCCATATAGGGGCCAGTTGGTAAGTCCTAGTTCTCAGTCTGCTGCTGCATCCTCACTTGGCCCATATGGTGGAGTCCAACCCACAGCCTCAGCTCTTTCCAATTTAGGAGGTCAGGCAGCTGCAGCCTCTTCACTTAACTCCTATGGAACCCTAGGCTCTTCACTTGCATCATATGGTAATCAGCCATCCTCTTATGGTGCCCAGGCTGCTTCATCATATGGTGTTCATGCAGATGCCTCCTCGTATAACACACAAGGAGCTGCCTCCTCCCTGGGGTCCTATGGGGCACAGGCAGCTTCTTATGGCGCTCATTCTGCAGCTTCCTCACTAGCTTATGGAGCCAAGGCTGCATCTTATAGTGCCCAGCCATCAGCCTCTTACAGTGCCCAGTCTGCCCCATATGCTGCCCAACATGCTGCCTCTCACTCCTCCCAGCCAGCTGCTTCTGTGGCACAACCAGCTGCAGCTACTGCCTATGCTAGCCAGCCGGCCACCTATGCAGCACGAGCAACTACTCCAATGGCTGGTTCTTATGGGGCCCAACCAGTTGTTCAGACACAATCTAATAGTTATGGGGCTCAACCATCCATTTGCCTGTCAGGTCCATATGGAGCTCAGGCTGCAGCTGCAGCTACTAGTTCCTATGGGGCAGCAGCTGCTTATGGGGCTCAGCCTTCAGCAACCTTTGTAACACCTTACCAAACACAGTCATCAACCTCCTTGGCTGCTTCCTATGCTGCACAGCAGTACCCCCAAGCTGCCGCCTCCTATCATGGCCAACCAGGGAGTGCCTATGATGGGACAGGGCAGCCATCAACAGCATACCTCTCTAAGTCCCAGGGAGCCATTGCCAACACCAATAGCGCTCCAACACCTTATGAGCGAACCCGGCTCTCCCCACCCCGGGCCAGCTATGATGATCCCTACAAAAAGGCTGTTGCAATGTCAAAGaggtgagtcacagctcacctcaaagctagacagtagataaacagcagctggg Alignment from Spaln_aa2Genome ACTACGCGTTTGTTCACATGGAGAAGGAAGCAGATGCCAAAGCCGCCATCGCGCAGCTCAACGGCAAAGAAGTGAAGGGCAAGCGCATCAACGTGGAACTCTCAACCAAGGGGCAGAAGAAGGGGCCTGCCCTGGCTATCCAGTCTGGGGACAAGACCAAGAAACCAGGGGCTGGGGACACAGCATTCCCTGGAACTGGTGGCTTCTCTGCCACCTTCGACTACCAGCAGGCTTTTGGCAACAGCACTGGTGGCTTTGATGGGCAAGCCCGTCAGCCCACACCACCATTCTTTGGTCGCGACCGCAGCCCCCTGCGCCGTTCACCTCCTCGAGCCTCTTATGTGGCGCCTCTGACGGCCCAGCCAGCCACCTACCGGGCCCAACCCTCAGTGTCTCTGGGAGCTGCATATAGGGCCCAGCCTTCCGCCTCTTTGGGTGTTGGCTATCGGACTCAGCCCATGGCAGCTCAGGCAGCTTCTTACCGTGCTCAGCCCTCTGTCTCCCTTGGGGCCCCATACAGGGGTCAGCTGGCTAGCCCTAGTTCCCAGTCTGCTGCAGCTTCCTCGCTTGGCCCATATGGTGGAGTCCAGCCCTCAGCCTCAGCCCTTTCCACTTATGGGGGTCAGGCAGCTGCAGCTTCTTCGCTTAATTCCTATGGGGCTCAGGGCTCCTCCCTTGCTTCCTATGGTAACCAGCCATCCTCTTATGGCGCCCAGGCTGCCTCTTCGTATGGGGTTCGTGCGGCTGCTTCTTCCTATAACACACAAGGAGCAGCTTCTTCCCTAGGTTCCTATGGGGCTCAAGCAGCCTCCTATGGTGCCCAGTCTGCAGCCTCCTCACTAGCTTATGGAGCCCAGGCAGCGTCTTACAGTGCCCAGCCCTCAGCCTCTTACAGTGCCCAGTCTGCCCCATATGCTGCACAACAGGCTGCTTCTTATTCTTCCCAGCCTGCTGCTTATGTGGCACAACCAGCCACAGCTGCTGCCTATGCTAGCCAGCCAGCTGCCTATGCTGCACAAGCCACTACCCCAATGGCTGGTTCCTATGGGGCTCAACCAGTTGTTCAGACCCAGCTGAATAGCTATGGGGCTCAAGCATCTATTGGCCTGTCAGGCTCATATGGAGCTCAGTCTGCTGCTGCGGCCACTGGCTCCTATGGGGCGGCAGCTGCTTACGGGGCTCAGCCTTCTGCCACCCTGGCAGCTCCTTACCGCACTCAGTCATCAGCCTCATTGGCTGCTTCCTATGCTGCCCAGCAGCATCCCCAGGCTGCTGCCTCCTACCGTGGCCAGCCGGGCAGTGCCTACGATGGGACAGGCCAGCCATCAGCAGCCTACCTGTCTATGTCCCAGGGGGCCGTTGCCAACGCCAACAGCACCCCGCCGCCCTATGAGCGTACCCGCCTCTCCCCACCCCGGGCCAGCTACGACGATCCCTACAAAAAGGCTGTCGCCATGTCAAAAAG ggttgtacctcacttgtaattggttgccctctctccctgtctccctgcagACTACGCGTTTATTCACATGGAGAAAGAAGCAGATGCCAAAGCCACCATTACACAGCTCAATGGTAAGGAAGTCAAGGGGAAACGCATTAATGTAGAACTCTCAACTAAGGGCCAGAGAAAAGGTCCAGCCCTGGCTATCCAGTCTGGTGACAAGACCAAGAAGCCAGGGGCTGGGGACACAGCATTCCCTGGAACTGGGGGAGATTCTGCCACCTTTGATTACCAGCAGGCTTTTGGCAATAGTACTGGTGGATTTGATGGACAAGTGCGCCAACCATCACCACCATTCTTTGGTCGTGATTGTAGTCCCCTACGCCGTTCCCCACATCGGGCATCATATGTGGCACCTCTGATGGCCCAGCCCGCAACTTACCGTGCTCAGCCTTCAGTGTCCTTGGGAGCAGCTTATAGGGCCCAACCCTCTGCGTCTTTGGGTGTTGACTATCGCTCACCCCCAATGGCAGCTCAGGCAGCTGCATATCGTGCCCAGCCCTCTCTCTCACTTAGGGCCCCATATAGGGGCCAGTTGGTAAGTCCTAGTTCTCAGTCTGCTGCTGCATCCTCACTTGGCCCATATGGTGGAGTCCAACCCACAGCCTCAGCTCTTTCCAATTTAGGAGGTCAGGCAGCTGCAGCCTCTTCACTTAACTCCTATGGAACCCTAGGCTCTTCACTTGCATCATATGGTAATCAGCCATCCTCTTATGGTGCCCAGGCTGCTTCATCATATGGTGTTCATGCAGATGCCTCCTCGTATAACACACAAGGAGCTGCCTCCTCCCTGGGGTCCTATGGGGCACAGGCAGCTTCTTATGGCGCTCATTCTGCAGCTTCCTCACTAGCTTATGGAGCCAAGGCTGCATCTTATAGTGCCCAGCCATCAGCCTCTTACAGTGCCCAGTCTGCCCCATATGCTGCCCAACATGCTGCCTCTCACTCCTCCCAGCCAGCTGCTTCTGTGGCACAACCAGCTGCAGCTACTGCCTATGCTAGCCAGCCGGCCACCTATGCAGCACGAGCAACTACTCCAATGGCTGGTTCTTATGGGGCCCAACCAGTTGTTCAGACACAATCTAATAGTTATGGGGCTCAACCATCCATTTGCCTGTCAGGTCCATATGGAGCTCAGGCTGCAGCTGCAGCTACTAGTTCCTATGGGGCAGCAGCTGCTTATGGGGCTCAGCCTTCAGCAACCTTTGTAACACCTTACCAAACACAGTCATCAACCTCCTTGGCTGCTTCCTATGCTGCACAGCAGTACCCCCAAGCTGCCGCCTCCTATCATGGCCAACCAGGGAGTGCCTATGATGGGACAGGGCAGCCATCAACAGCATACCTCTCTAAGTCCCAGGGAGCCATTGCCAACACCAATAGCGCTCCAACACCTTATGAGCGAACCCGGCTCTCCCCACCCCGGGCCAGCTATGATGATCCCTACAAAAAGGCTGTTGCAATGTCAAAGAGgtgagtcacagctcacctcaaagctagacagtagataaacagcagctggg Alignment from Spaln_nt2Genome ACTACGCGTTTGTTCACATGGAGAAGGAAGCAGATGCCAAAGCCGCCATCGCGCAGCTCAACGGCAAAGAAGTGAAGGGCAAGCGCATCAACGTGGAACTCTCAACCAAGGGGCAGAAGAAGGGGCCTGCCCTGGCTATCCAGTCTGGGGACAAGACCAAGAAACCAGGGGCTGGGGACACAGCATTCCCTGGAACTGGTGGCTTCTCTGCCACCTTCGACTACCAGCAGGCTTTTGGCAACAGCACTGGTGGCTTTGATGGGCAAGCCCGTCAGCCCACACCACCATTCTTTGGTCGCGACCGCAGCCCCCTGCGCCGTTCACCTCCTCGAGCCTCTTATGTGGCGCCTCTGACGGCCCAGCCAGCCACCTACCGGGCCCAACCCTCAGTGTCTCTGGGAGCTGCATATAGGGCCCAGCCTTCCGCCTCTTTGGGTGTTGGCTATCGGACTCAGCCCATGGCAGCTCAGGCAGCTTCTTACCGTGCTCAGCCCTCTGTCTCCCTTGGGGCCCCATACAGGGGTCAGCTGGCTAGCCCTAGTTCCCAGTCTGCTGCAGCTTCCTCGCTTGGCCCATATGGTGGAGTCCAGCCCTCAGCCTCAGCCCTTTCCACTTATGGGGGTCAGGCAGCTGCAGCTTCTTCGCTTAATTCCTATGGGGCTCAGGGCTCCTCCCTTGCTTCCTATGGTAACCAGCCATCCTCTTATGGCGCCCAGGCTGCCTCTTCGTATGGGGTTCGTGCGGCTGCTTCTTCCTATAACACACAAGGAGCAGCTTCTTCCCTAGGTTCCTATGGGGCTCAAGCAGCCTCCTATGGTGCCCAGTCTGCAGCCTCCTCACTAGCTTATGGAGCCCAGGCAGCGTCTTACAGTGCCCAGCCCTCAGCCTCTTACAGTGCCCAGTCTGCCCCATATGCTGCACAACAGGCTGCTTCTTATTCTTCCCAGCCTGCTGCTTATGTGGCACAACCAGCCACAGCTGCTGCCTATGCTAGCCAGCCAGCTGCCTATGCTGCACAAGCCACTACCCCAATGGCTGGTTCCTATGGGGCTCAACCAGTTGTTCAGACCCAGCTGAATAGCTATGGGGCTCAAGCATCTATTGGCCTGTCAGGCTCATATGGAGCTCAGTCTGCTGCTGCGGCCACTGGCTCCTATGGGGCGGCAGCTGCTTACGGGGCTCAGCCTTCTGCCACCCTGGCAGCTCCTTACCGCACTCAGTCATCAGCCTCATTGGCTGCTTCCTATGCTGCCCAGCAGCATCCCCAGGCTGCTGCCTCCTACCGTGGCCAGCCGGGCAGTGCCTACGATGGGACAGGCCAGCCATCAGCAGCCTACCTGTCTATGTCCCAGGGGGCCGTTGCCAACGCCAACAGCACCCCGCCGCCCTATGAGCGTACCCGCCTCTCCCCACCCCGGGCCAGCTACGACGATCCCTACAAAAAGGCTGTCGCCATGTCAAAAAG ggttgtacctcacttgtaattggttgccctctctccctgtctccctgcagACTACGCGTTTATTCACATGGAGAAAGAAGCAGATGCCAAAGCCACCATTACACAGCTCAATGGTAAGGAAGTCAAGGGGAAACGCATTAATGTAGAACTCTCAACTAAGGGCCAGAGAAAAGGTCCAGCCCTGGCTATCCAGTCTGGTGACAAGACCAAGAAGCCAGGGGCTGGGGACACAGCATTCCCTGGAACTGGGGGAGATTCTGCCACCTTTGATTACCAGCAGGCTTTTGGCAATAGTACTGGTGGATTTGATGGACAAGTGCGCCAACCATCACCACCATTCTTTGGTCGTGATTGTAGTCCCCTACGCCGTTCCCCACATCGGGCATCATATGTGGCACCTCTGATGGCCCAGCCCGCAACTTACCGTGCTCAGCCTTCAGTGTCCTTGGGAGCAGCTTATAGGGCCCAACCCTCTGCGTCTTTGGGTGTTGACTATCGCTCACCCCCAATGGCAGCTCAGGCAGCTGCATATCGTGCCCAGCCCTCTCTCTCACTTAGGGCCCCATATAGGGGCCAGTTGGTAAGTCCTAGTTCTCAGTCTGCTGCTGCATCCTCACTTGGCCCATATGGTGGAGTCCAACCCACAGCCTCAGCTCTTTCCAATTTAGGAGGTCAGGCAGCTGCAGCCTCTTCACTTAACTCCTATGGAACCCTAGGCTCTTCACTTGCATCATATGGTAATCAGCCATCCTCTTATGGTGCCCAGGCTGCTTCATCATATGGTGTTCATGCAGATGCCTCCTCGTATAACACACAAGGAGCTGCCTCCTCCCTGGGGTCCTATGGGGCACAGGCAGCTTCTTATGGCGCTCATTCTGCAGCTTCCTCACTAGCTTATGGAGCCAAGGCTGCATCTTATAGTGCCCAGCCATCAGCCTCTTACAGTGCCCAGTCTGCCCCATATGCTGCCCAACATGCTGCCTCTCACTCCTCCCAGCCAGCTGCTTCTGTGGCACAACCAGCTGCAGCTACTGCCTATGCTAGCCAGCCGGCCACCTATGCAGCACGAGCAACTACTCCAATGGCTGGTTCTTATGGGGCCCAACCAGTTGTTCAGACACAATCTAATAGTTATGGGGCTCAACCATCCATTTGCCTGTCAGGTCCATATGGAGCTCAGGCTGCAGCTGCAGCTACTAGTTCCTATGGGGCAGCAGCTGCTTATGGGGCTCAGCCTTCAGCAACCTTTGTAACACCTTACCAAACACAGTCATCAACCTCCTTGGCTGCTTCCTATGCTGCACAGCAGTACCCCCAAGCTGCCGCCTCCTATCATGGCCAACCAGGGAGTGCCTATGATGGGACAGGGCAGCCATCAACAGCATACCTCTCTAAGTCCCAGGGAGCCATTGCCAACACCAATAGCGCTCCAACACCTTATGAGCGAACCCGGCTCTCCCCACCCCGGGCCAGCTATGATGATCCCTACAAAAAGGCTGTTGCAATGTCAAAGAGgtgagtcacagctcacctcaaagctagacagtagataaacagcagctggg Alignment from Pairagon ACTACGCGTTTGTTCACATGGAGAAGGAAGCAGATGCCAAAGCCGCCATCGCGCAGCTCAACGGCAAAGAAGTGAAGGGCAAGCGCATCAACGTGGAACTCTCAACCAAGGGGCAGAAGAAGGGGCCTGCCCTGGCTATCCAGTCTGGGGACAAGACCAAGAAACCAGGGGCTGGGGACACAGCATTCCCTGGAACTGGTGGCTTCTCTGCCACCTTCGACTACCAGCAGGCTTTTGGCAACAGCACTGGTGGCTTTGATGGGCAAGCCCGTCAGCCCACACCACCATTCTTTGGTCGCGACCGCAGCCCCCTGCGCCGTTCACCTCCTCGAGCCTCTTATGTGGCGCCTCTGACGGCCCAGCCAGCCACCTACCGGGCCCAACCCTCAGTGTCTCTGGGAGCTGCATATAGGGCCCAGCCTTCCGCCTCTTTGGGTGTTGGCTATCGGACTCAGCCCATGGCAGCTCAGGCAGCTTCTTACCGTGCTCAGCCCTCTGTCTCCCTTGGGGCCCCATACAGGGGTCAGCTGGCTAGCCCTAGTTCCCAGTCTGCTGCAGCTTCCTCGCTTGGCCCATATGGTGGAGTCCAGCCCTCAGCCTCAGCCCTTTCCACTTATGGGGGTCAGGCAGCTGCAGCTTCTTCGCTTAATTCCTATGGGGCTCAGGGCTCCTCCCTTGCTTCCTATGGTAACCAGCCATCCTCTTATGGCGCCCAGGCTGCCTCTTCGTATGGGGTTCGTGCGGCTGCTTCTTCCTATAACACACAAGGAGCAGCTTCTTCCCTAGGTTCCTATGGGGCTCAAGCAGCCTCCTATGGTGCCCAGTCTGCAGCCTCCTCACTAGCTTATGGAGCCCAGGCAGCGTCTTACAGTGCCCAGCCCTCAGCCTCTTACAGTGCCCAGTCTGCCCCATATGCTGCACAACAGGCTGCTTCTTATTCTTCCCAGCCTGCTGCTTATGTGGCACAACCAGCCACAGCTGCTGCCTATGCTAGCCAGCCAGCTGCCTATGCTGCACAAGCCACTACCCCAATGGCTGGTTCCTATGGGGCTCAACCAGTTGTTCAGACCCAGCTGAATAGCTATGGGGCTCAAGCATCTATTGGCCTGTCAGGCTCATATGGAGCTCAGTCTGCTGCTGCGGCCACTGGCTCCTATGGGGCGGCAGCTGCTTACGGGGCTCAGCCTTCTGCCACCCTGGCAGCTCCTTACCGCACTCAGTCATCAGCCTCATTGGCTGCTTCCTATGCTGCCCAGCAGCATCCCCAGGCTGCTGCCTCCTACCGTGGCCAGCCGGGCAGTGCCTACGATGGGACAGGCCAGCCATCAGCAGCCTACCTGTCTATGTCCCAGGGGGCCGTTGCCAACGCCAACAGCACCCCGCCGCCCTATGAGCGTACCCGCCTCTCCCCACCCCGGGCCAGCTACGACGATCCCTACAAAAAGGCTGTCGCCATGTCAAAAAG ggttgtacctcacttgtaattggttgccctctctccctgtctccctgcagACTACGCGTTTATTCACATGGAGAAAGAAGCAGATGCCAAAGCCACCATTACACAGCTCAATGGTAAGGAAGTCAAGGGGAAACGCATTAATGTAGAACTCTCAACTAAGGGCCAGAGAAAAGGTCCAGCCCTGGCTATCCAGTCTGGTGACAAGACCAAGAAGCCAGGGGCTGGGGACACAGCATTCCCTGGAACTGGGGGAGATTCTGCCACCTTTGATTACCAGCAGGCTTTTGGCAATAGTACTGGTGGATTTGATGGACAAGTGCGCCAACCATCACCACCATTCTTTGGTCGTGATTGTAGTCCCCTACGCCGTTCCCCACATCGGGCATCATATGTGGCACCTCTGATGGCCCAGCCCGCAACTTACCGTGCTCAGCCTTCAGTGTCCTTGGGAGCAGCTTATAGGGCCCAACCCTCTGCGTCTTTGGGTGTTGACTATCGCTCACCCCCAATGGCAGCTCAGGCAGCTGCATATCGTGCCCAGCCCTCTCTCTCACTTAGGGCCCCATATAGGGGCCAGTTGGTAAGTCCTAGTTCTCAGTCTGCTGCTGCATCCTCACTTGGCCCATATGGTGGAGTCCAACCCACAGCCTCAGCTCTTTCCAATTTAGGAGGTCAGGCAGCTGCAGCCTCTTCACTTAACTCCTATGGAACCCTAGGCTCTTCACTTGCATCATATGGTAATCAGCCATCCTCTTATGGTGCCCAGGCTGCTTCATCATATGGTGTTCATGCAGATGCCTCCTCGTATAACACACAAGGAGCTGCCTCCTCCCTGGGGTCCTATGGGGCACAGGCAGCTTCTTATGGCGCTCATTCTGCAGCTTCCTCACTAGCTTATGGAGCCAAGGCTGCATCTTATAGTGCCCAGCCATCAGCCTCTTACAGTGCCCAGTCTGCCCCATATGCTGCCCAACATGCTGCCTCTCACTCCTCCCAGCCAGCTGCTTCTGTGGCACAACCAGCTGCAGCTACTGCCTATGCTAGCCAGCCGGCCACCTATGCAGCACGAGCAACTACTCCAATGGCTGGTTCTTATGGGGCCCAACCAGTTGTTCAGACACAATCTAATAGTTATGGGGCTCAACCATCCATTTGCCTGTCAGGTCCATATGGAGCTCAGGCTGCAGCTGCAGCTACTAGTTCCTATGGGGCAGCAGCTGCTTATGGGGCTCAGCCTTCAGCAACCTTTGTAACACCTTACCAAACACAGTCATCAACCTCCTTGGCTGCTTCCTATGCTGCACAGCAGTACCCCCAAGCTGCCGCCTCCTATCATGGCCAACCAGGGAGTGCCTATGATGGGACAGGGCAGCCATCAACAGCATACCTCTCTAAGTCCCAGGGAGCCATTGCCAACACCAATAGCGCTCCAACACCTTATGAGCGAACCCGGCTCTCCCCACCCCGGGCCAGCTATGATGATCCCTACAAAAAGGCTGTTGCAATGTCAAAGAGgtgagtcacagctcacctcaaagctagacagtagataaacagcagctggg Alignment from Exonerate_protein2genome ACTACGCGTTTGTTCACATGGAGAAGGAAGCAGATGCCAAAGCCGCCATCGCGCAGCTCAACGGCAAAGAAGTGAAGGGCAAGCGCATCAACGTGGAACTCTCAACCAAGGGGCAGAAGAAGGGGCCTGCCCTGGCTATCCAGTCTGGGGACAAGACCAAGAAACCAGGGGCTGGGGACACAGCATTCCCTGGAACTGGTGGCTTCTCTGCCACCTTCGACTACCAGCAGGCTTTTGGCAACAGCACTGGTGGCTTTGATGGGCAAGCCCGTCAGCCCACACCACCATTCTTTGGTCGCGACCGCAGCCCCCTGCGCCGTTCACCTCCTCGAGCCTCTTATGTGGCGCCTCTGACGGCCCAGCCAGCCACCTACCGGGCCCAACCCTCAGTGTCTCTGGGAGCTGCATATAGGGCCCAGCCTTCCGCCTCTTTGGGTGTTGGCTATCGGACTCAGCCCATGGCAGCTCAGGCAGCTTCTTACCGTGCTCAGCCCTCTGTCTCCCTTGGGGCCCCATACAGGGGTCAGCTGGCTAGCCCTAGTTCCCAGTCTGCTGCAGCTTCCTCGCTTGGCCCATATGGTGGAGTCCAGCCCTCAGCCTCAGCCCTTTCCACTTATGGGGGTCAGGCAGCTGCAGCTTCTTCGCTTAATTCCTATGGGGCTCAGGGCTCCTCCCTTGCTTCCTATGGTAACCAGCCATCCTCTTATGGCGCCCAGGCTGCCTCTTCGTATGGGGTTCGTGCGGCTGCTTCTTCCTATAACACACAAGGAGCAGCTTCTTCCCTAGGTTCCTATGGGGCTCAAGCAGCCTCCTATGGTGCCCAGTCTGCAGCCTCCTCACTAGCTTATGGAGCCCAGGCAGCGTCTTACAGTGCCCAGCCCTCAGCCTCTTACAGTGCCCAGTCTGCCCCATATGCTGCACAACAGGCTGCTTCTTATTCTTCCCAGCCTGCTGCTTATGTGGCACAACCAGCCACAGCTGCTGCCTATGCTAGCCAGCCAGCTGCCTATGCTGCACAAGCCACTACCCCAATGGCTGGTTCCTATGGGGCTCAACCAGTTGTTCAGACCCAGCTGAATAGCTATGGGGCTCAAGCATCTATTGGCCTGTCAGGCTCATATGGAGCTCAGTCTGCTGCTGCGGCCACTGGCTCCTATGGGGCGGCAGCTGCTTACGGGGCTCAGCCTTCTGCCACCCTGGCAGCTCCTTACCGCACTCAGTCATCAGCCTCATTGGCTGCTTCCTATGCTGCCCAGCAGCATCCCCAGGCTGCTGCCTCCTACCGTGGCCAGCCGGGCAGTGCCTACGATGGGACAGGCCAGCCATCAGCAGCCTACCTGTCTATGTCCCAGGGGGCCGTTGCCAACGCCAACAGCACCCCGCCGCCCTATGAGCGTACCCGCCTCTCCCCACCCCGGGCCAGCTACGACGATCCCTACAAAAAGGCTGTCGCCATGTCAAAAAG ggttgtacctcacttgtaattggttgccctctctccctgtctccctgcagACTACGCGTTTATTCACATGGAGAAAGAAGCAGATGCCAAAGCCACCATTACACAGCTCAATGGTAAGGAAGTCAAGGGGAAACGCATTAATGTAGAACTCTCAACTAAGGGCCAGAGAAAAGGTCCAGCCCTGGCTATCCAGTCTGGTGACAAGACCAAGAAGCCAGGGGCTGGGGACACAGCATTCCCTGGAACTGGGGGAGATTCTGCCACCTTTGATTACCAGCAGGCTTTTGGCAATAGTACTGGTGGATTTGATGGACAAGTGCGCCAACCATCACCACCATTCTTTGGTCGTGATTGTAGTCCCCTACGCCGTTCCCCACATCGGGCATCATATGTGGCACCTCTGATGGCCCAGCCCGCAACTTACCGTGCTCAGCCTTCAGTGTCCTTGGGAGCAGCTTATAGGGCCCAACCCTCTGCGTCTTTGGGTGTTGACTATCGCTCACCCCCAATGGCAGCTCAGGCAGCTGCATATCGTGCCCAGCCCTCTCTCTCACTTAGGGCCCCATATAGGGGCCAGTTGGTAAGTCCTAGTTCTCAGTCTGCTGCTGCATCCTCACTTGGCCCATATGGTGGAGTCCAACCCACAGCCTCAGCTCTTTCCAATTTAGGAGGTCAGGCAGCTGCAGCCTCTTCACTTAACTCCTATGGAACCCTAGGCTCTTCACTTGCATCATATGGTAATCAGCCATCCTCTTATGGTGCCCAGGCTGCTTCATCATATGGTGTTCATGCAGATGCCTCCTCGTATAACACACAAGGAGCTGCCTCCTCCCTGGGGTCCTATGGGGCACAGGCAGCTTCTTATGGCGCTCATTCTGCAGCTTCCTCACTAGCTTATGGAGCCAAGGCTGCATCTTATAGTGCCCAGCCATCAGCCTCTTACAGTGCCCAGTCTGCCCCATATGCTGCCCAACATGCTGCCTCTCACTCCTCCCAGCCAGCTGCTTCTGTGGCACAACCAGCTGCAGCTACTGCCTATGCTAGCCAGCCGGCCACCTATGCAGCACGAGCAACTACTCCAATGGCTGGTTCTTATGGGGCCCAACCAGTTGTTCAGACACAATCTAATAGTTATGGGGCTCAACCATCCATTTGCCTGTCAGGTCCATATGGAGCTCAGGCTGCAGCTGCAGCTACTAGTTCCTATGGGGCAGCAGCTGCTTATGGGGCTCAGCCTTCAGCAACCTTTGTAACACCTTACCAAACACAGTCATCAACCTCCTTGGCTGCTTCCTATGCTGCACAGCAGTACCCCCAAGCTGCCGCCTCCTATCATGGCCAACCAGGGAGTGCCTATGATGGGACAGGGCAGCCATCAACAGCATACCTCTCTAAGTCCCAGGGAGCCATTGCCAACACCAATAGCGCTCCAACACCTTATGAGCGAACCCGGCTCTCCCCACCCCGGGCCAGCTATGATGATCCCTACAAAAAGGCTGTTGCAATGTCAAAGAGgtgagtcacagctcacctcaaagctagacagtagataaacagcagctggg Alignment from Exonerate_coding2genome ACTACGCGTTTGTTCACATGGAGAAGGAAGCAGATGCCAAAGCCGCCATCGCGCAGCTCAACGGCAAAGAAGTGAAGGGCAAGCGCATCAACGTGGAACTCTCAACCAAGGGGCAGAAGAAGGGGCCTGCCCTGGCTATCCAGTCTGGGGACAAGACCAAGAAACCAGGGGCTGGGGACACAGCATTCCCTGGAACTGGTGGCTTCTCTGCCACCTTCGACTACCAGCAGGCTTTTGGCAACAGCACTGGTGGCTTTGATGGGCAAGCCCGTCAGCCCACACCACCATTCTTTGGTCGCGACCGCAGCCCCCTGCGCCGTTCACCTCCTCGAGCCTCTTATGTGGCGCCTCTGACGGCCCAGCCAGCCACCTACCGGGCCCAACCCTCAGTGTCTCTGGGAGCTGCATATAGGGCCCAGCCTTCCGCCTCTTTGGGTGTTGGCTATCGGACTCAGCCCATGGCAGCTCAGGCAGCTTCTTACCGTGCTCAGCCCTCTGTCTCCCTTGGGGCCCCATACAGGGGTCAGCTGGCTAGCCCTAGTTCCCAGTCTGCTGCAGCTTCCTCGCTTGGCCCATATGGTGGAGTCCAGCCCTCAGCCTCAGCCCTTTCCACTTATGGGGGTCAGGCAGCTGCAGCTTCTTCGCTTAATTCCTATGGGGCTCAGGGCTCCTCCCTTGCTTCCTATGGTAACCAGCCATCCTCTTATGGCGCCCAGGCTGCCTCTTCGTATGGGGTTCGTGCGGCTGCTTCTTCCTATAACACACAAGGAGCAGCTTCTTCCCTAGGTTCCTATGGGGCTCAAGCAGCCTCCTATGGTGCCCAGTCTGCAGCCTCCTCACTAGCTTATGGAGCCCAGGCAGCGTCTTACAGTGCCCAGCCCTCAGCCTCTTACAGTGCCCAGTCTGCCCCATATGCTGCACAACAGGCTGCTTCTTATTCTTCCCAGCCTGCTGCTTATGTGGCACAACCAGCCACAGCTGCTGCCTATGCTAGCCAGCCAGCTGCCTATGCTGCACAAGCCACTACCCCAATGGCTGGTTCCTATGGGGCTCAACCAGTTGTTCAGACCCAGCTGAATAGCTATGGGGCTCAAGCATCTATTGGCCTGTCAGGCTCATATGGAGCTCAGTCTGCTGCTGCGGCCACTGGCTCCTATGGGGCGGCAGCTGCTTACGGGGCTCAGCCTTCTGCCACCCTGGCAGCTCCTTACCGCACTCAGTCATCAGCCTCATTGGCTGCTTCCTATGCTGCCCAGCAGCATCCCCAGGCTGCTGCCTCCTACCGTGGCCAGCCGGGCAGTGCCTACGATGGGACAGGCCAGCCATCAGCAGCCTACCTGTCTATGTCCCAGGGGGCCGTTGCCAACGCCAACAGCACCCCGCCGCCCTATGAGCGTACCCGCCTCTCCCCACCCCGGGCCAGCTACGACGATCCCTACAAAAAGGCTGTCGCCATGTCAAAAAG ggttgtacctcacttgtaattggttgccctctctccctgtctccctgcagACTACGCGTTTATTCACATGGAGAAAGAAGCAGATGCCAAAGCCACCATTACACAGCTCAATGGTAAGGAAGTCAAGGGGAAACGCATTAATGTAGAACTCTCAACTAAGGGCCAGAGAAAAGGTCCAGCCCTGGCTATCCAGTCTGGTGACAAGACCAAGAAGCCAGGGGCTGGGGACACAGCATTCCCTGGAACTGGGGGAGATTCTGCCACCTTTGATTACCAGCAGGCTTTTGGCAATAGTACTGGTGGATTTGATGGACAAGTGCGCCAACCATCACCACCATTCTTTGGTCGTGATTGTAGTCCCCTACGCCGTTCCCCACATCGGGCATCATATGTGGCACCTCTGATGGCCCAGCCCGCAACTTACCGTGCTCAGCCTTCAGTGTCCTTGGGAGCAGCTTATAGGGCCCAACCCTCTGCGTCTTTGGGTGTTGACTATCGCTCACCCCCAATGGCAGCTCAGGCAGCTGCATATCGTGCCCAGCCCTCTCTCTCACTTAGGGCCCCATATAGGGGCCAGTTGGTAAGTCCTAGTTCTCAGTCTGCTGCTGCATCCTCACTTGGCCCATATGGTGGAGTCCAACCCACAGCCTCAGCTCTTTCCAATTTAGGAGGTCAGGCAGCTGCAGCCTCTTCACTTAACTCCTATGGAACCCTAGGCTCTTCACTTGCATCATATGGTAATCAGCCATCCTCTTATGGTGCCCAGGCTGCTTCATCATATGGTGTTCATGCAGATGCCTCCTCGTATAACACACAAGGAGCTGCCTCCTCCCTGGGGTCCTATGGGGCACAGGCAGCTTCTTATGGCGCTCATTCTGCAGCTTCCTCACTAGCTTATGGAGCCAAGGCTGCATCTTATAGTGCCCAGCCATCAGCCTCTTACAGTGCCCAGTCTGCCCCATATGCTGCCCAACATGCTGCCTCTCACTCCTCCCAGCCAGCTGCTTCTGTGGCACAACCAGCTGCAGCTACTGCCTATGCTAGCCAGCCGGCCACCTATGCAGCACGAGCAACTACTCCAATGGCTGGTTCTTATGGGGCCCAACCAGTTGTTCAGACACAATCTAATAGTTATGGGGCTCAACCATCCATTTGCCTGTCAGGTCCATATGGAGCTCAGGCTGCAGCTGCAGCTACTAGTTCCTATGGGGCAGCAGCTGCTTATGGGGCTCAGCCTTCAGCAACCTTTGTAACACCTTACCAAACACAGTCATCAACCTCCTTGGCTGCTTCCTATGCTGCACAGCAGTACCCCCAAGCTGCCGCCTCCTATCATGGCCAACCAGGGAGTGCCTATGATGGGACAGGGCAGCCATCAACAGCATACCTCTCTAAGTCCCAGGGAGCCATTGCCAACACCAATAGCGCTCCAACACCTTATGAGCGAACCCGGCTCTCCCCACCCCGGGCCAGCTATGATGATCCCTACAAAAAGGCTGTTGCAATGTCAAAGAGgtgagtcacagctcacctcaaagctagacagtagataaacagcagctggg Alignment from GeneWise ACTACGCGTTTGTTCACATGGAGAAGGAAGCAGATGCCAAAGCCGCCATCGCGCAGCTCAACGGCAAAGAAGTGAAGGGCAAGCGCATCAACGTGGAACTCTCAACCAAGGGGCAGAAGAAGGGGCCTGCCCTGGCTATCCAGTCTGGGGACAAGACCAAGAAACCAGGGGCTGGGGACACAGCATTCCCTGGAACTGGTGGCTTCTCTGCCACCTTCGACTACCAGCAGGCTTTTGGCAACAGCACTGGTGGCTTTGATGGGCAAGCCCGTCAGCCCACACCACCATTCTTTGGTCGCGACCGCAGCCCCCTGCGCCGTTCACCTCCTCGAGCCTCTTATGTGGCGCCTCTGACGGCCCAGCCAGCCACCTACCGGGCCCAACCCTCAGTGTCTCTGGGAGCTGCATATAGGGCCCAGCCTTCCGCCTCTTTGGGTGTTGGCTATCGGACTCAGCCCATGGCAGCTCAGGCAGCTTCTTACCGTGCTCAGCCCTCTGTCTCCCTTGGGGCCCCATACAGGGGTCAGCTGGCTAGCCCTAGTTCCCAGTCTGCTGCAGCTTCCTCGCTTGGCCCATATGGTGGAGTCCAGCCCTCAGCCTCAGCCCTTTCCACTTATGGGGGTCAGGCAGCTGCAGCTTCTTCGCTTAATTCCTATGGGGCTCAGGGCTCCTCCCTTGCTTCCTATGGTAACCAGCCATCCTCTTATGGCGCCCAGGCTGCCTCTTCGTATGGGGTTCGTGCGGCTGCTTCTTCCTATAACACACAAGGAGCAGCTTCTTCCCTAGGTTCCTATGGGGCTCAAGCAGCCTCCTATGGTGCCCAGTCTGCAGCCTCCTCACTAGCTTATGGAGCCCAGGCAGCGTCTTACAGTGCCCAGCCCTCAGCCTCTTACAGTGCCCAGTCTGCCCCATATGCTGCACAACAGGCTGCTTCTTATTCTTCCCAGCCTGCTGCTTATGTGGCACAACCAGCCACAGCTGCTGCCTATGCTAGCCAGCCAGCTGCCTATGCTGCACAAGCCACTACCCCAATGGCTGGTTCCTATGGGGCTCAACCAGTTGTTCAGACCCAGCTGAATAGCTATGGGGCTCAAGCATCTATTGGCCTGTCAGGCTCATATGGAGCTCAGTCTGCTGCTGCGGCCACTGGCTCCTATGGGGCGGCAGCTGCTTACGGGGCTCAGCCTTCTGCCACCCTGGCAGCTCCTTACCGCACTCAGTCATCAGCCTCATTGGCTGCTTCCTATGCTGCCCAGCAGCATCCCCAGGCTGCTGCCTCCTACCGTGGCCAGCCGGGCAGTGCCTACGATGGGACAGGCCAGCCATCAGCAGCCTACCTGTCTATGTCCCAGGGGGCCGTTGCCAACGCCAACAGCACCCCGCCGCCCTATGAGCGTACCCGCCTCTCCCCACCCCGGGCCAGCTACGACGATCCCTACAAAAAGGCTGTCGCCATGTCAAAAAG ggttgtacctcacttgtaattggttgccctctctccctgtctccctgcagACTACGCGTTTATTCACATGGAGAAAGAAGCAGATGCCAAAGCCACCATTACACAGCTCAATGGTAAGGAAGTCAAGGGGAAACGCATTAATGTAGAACTCTCAACTAAGGGCCAGAGAAAAGGTCCAGCCCTGGCTATCCAGTCTGGTGACAAGACCAAGAAGCCAGGGGCTGGGGACACAGCATTCCCTGGAACTGGGGGAGATTCTGCCACCTTTGATTACCAGCAGGCTTTTGGCAATAGTACTGGTGGATTTGATGGACAAGTGCGCCAACCATCACCACCATTCTTTGGTCGTGATTGTAGTCCCCTACGCCGTTCCCCACATCGGGCATCATATGTGGCACCTCTGATGGCCCAGCCCGCAACTTACCGTGCTCAGCCTTCAGTGTCCTTGGGAGCAGCTTATAGGGCCCAACCCTCTGCGTCTTTGGGTGTTGACTATCGCTCACCCCCAATGGCAGCTCAGGCAGCTGCATATCGTGCCCAGCCCTCTCTCTCACTTAGGGCCCCATATAGGGGCCAGTTGGTAAGTCCTAGTTCTCAGTCTGCTGCTGCATCCTCACTTGGCCCATATGGTGGAGTCCAACCCACAGCCTCAGCTCTTTCCAATTTAGGAGGTCAGGCAGCTGCAGCCTCTTCACTTAACTCCTATGGAACCCTAGGCTCTTCACTTGCATCATATGGTAATCAGCCATCCTCTTATGGTGCCCAGGCTGCTTCATCATATGGTGTTCATGCAGATGCCTCCTCGTATAACACACAAGGAGCTGCCTCCTCCCTGGGGTCCTATGGGGCACAGGCAGCTTCTTATGGCGCTCATTCTGCAGCTTCCTCACTAGCTTATGGAGCCAAGGCTGCATCTTATAGTGCCCAGCCATCAGCCTCTTACAGTGCCCAGTCTGCCCCATATGCTGCCCAACATGCTGCCTCTCACTCCTCCCAGCCAGCTGCTTCTGTGGCACAACCAGCTGCAGCTACTGCCTATGCTAGCCAGCCGGCCACCTATGCAGCACGAGCAACTACTCCAATGGCTGGTTCTTATGGGGCCCAACCAGTTGTTCAGACACAATCTAATAGTTATGGGGCTCAACCATCCATTTGCCTGTCAGGTCCATATGGAGCTCAGGCTGCAGCTGCAGCTACTAGTTCCTATGGGGCAGCAGCTGCTTATGGGGCTCAGCCTTCAGCAACCTTTGTAACACCTTACCAAACACAGTCATCAACCTCCTTGGCTGCTTCCTATGCTGCACAGCAGTACCCCCAAGCTGCCGCCTCCTATCATGGCCAACCAGGGAGTGCCTATGATGGGACAGGGCAGCCATCAACAGCATACCTCTCTAAGTCCCAGGGAGCCATTGCCAACACCAATAGCGCTCCAACACCTTATGAGCGAACCCGGCTCTCCCCACCCCGGGCCAGCTATGATGATCCCTACAAAAAGGCTGTTGCAATGTCAAAGAGgtgagtcacagctcacctcaaagctagacagtagataaacagcagctggg #### Rbm20_ID11380_7 --> 0 - 0 Original Alignment GCTTTCTTGGAGATGGCTTACACAGAAGCCGCCCAGGCTATGGTCCAGTACTACCAAGAAAAGCCTGCGATT------ATCAATGGCGAGAAGTTACTCATTCGCATGTCCACCAGATACAAGGAATTGCAGCTGAAG tgatagcccactgaattattatctcctaactttagagttgttatttctagGTATTCTTGGAGATGGCATACACAGAAGCAGCTCGAGCAATGGTACAATATTATCAGGAAAAGCCTGCAATGGCAATGATAAATGGTGAGAAGCTGCTCATTCAAATGTCCACCAGGTTCAAAGAACTGCAGCTGAAGgtgagttgccatctcacttatccagctacaaagcattcatctgcttgctg Alignment from CESAR GCTTTCTTGGAGATGGCTTACACAGAAGCCGCCCAGGCTATGGTCCAGTACTACCAAGAAAAGCCT------GCGATTATCAATGGCGAGAAGTTACTCATTCGCATGTCCACCAGATACAAGGAATTGCAGCTGAAG tgatagcccactgaattattatctcctaactttagagttgttatttctagGTATTCTTGGAGATGGCATACACAGAAGCAGCTCGAGCAATGGTACAATATTATCAGGAAAAGCCTGCAATGGCAATGATAAATGGTGAGAAGCTGCTCATTCAAATGTCCACCAGGTTCAAAGAACTGCAGCTGAAGgtgagttgccatctcacttatccagctacaaagcattcatctgcttgctg Alignment from Spaln_aa2Genome GCTTTCTTGGAGATGGCTTACACAGAAGCCGCCCAGGCTATGGTCCAGTACTACCAAGAAAAGCCT------GCGATTATCAATGGCGAGAAGTTACTCATTCGCATGTCCACCAGATACAAGGAATTGCAGCTGAAG tgatagcccactgaattattatctcctaactttagagttgttatttctagGTATTCTTGGAGATGGCATACACAGAAGCAGCTCGAGCAATGGTACAATATTATCAGGAAAAGCCTGCAATGGCAATGATAAATGGTGAGAAGCTGCTCATTCAAATGTCCACCAGGTTCAAAGAACTGCAGCTGAAGgtgagttgccatctcacttatccagctacaaagcattcatctgcttgctg Alignment from Spaln_nt2Genome GCTTTCTTGGAGATGGCTTACACAGAAGCCGCCCAGGCTATGGTCCAGTACTACCAAGAAAAGCCTGCGATT------ATCAATGGCGAGAAGTTACTCATTCGCATGTCCACCAGATACAAGGAATTGCAGCTGAAG tgatagcccactgaattattatctcctaactttagagttgttatttctagGTATTCTTGGAGATGGCATACACAGAAGCAGCTCGAGCAATGGTACAATATTATCAGGAAAAGCCTGCAATGGCAATGATAAATGGTGAGAAGCTGCTCATTCAAATGTCCACCAGGTTCAAAGAACTGCAGCTGAAGgtgagttgccatctcacttatccagctacaaagcattcatctgcttgctg Alignment from Pairagon GCTTTCTTGGAGATGGCTTACACAGAAGCCGCCCAGGCTATGGTCCAGTACTACCAAGAAAAGCCT------GCGATTATCAATGGCGAGAAGTTACTCATTCGCATGTCCACCAGATACAAGGAATTGCAGCTGAAG tgatagcccactgaattattatctcctaactttagagttgttatttctagGTATTCTTGGAGATGGCATACACAGAAGCAGCTCGAGCAATGGTACAATATTATCAGGAAAAGCCTGCAATGGCAATGATAAATGGTGAGAAGCTGCTCATTCAAATGTCCACCAGGTTCAAAGAACTGCAGCTGAAGgtgagttgccatctcacttatccagctacaaagcattcatctgcttgctg Alignment from Exonerate_protein2genome GCTTTCTTGGAGATGGCTTACACAGAAGCCGCCCAGGCTATGGTCCAGTACTACCAAGAAAAGCCT------GCGATTATCAATGGCGAGAAGTTACTCATTCGCATGTCCACCAGATACAAGGAATTGCAGCTGAAG tgatagcccactgaattattatctcctaactttagagttgttatttctagGTATTCTTGGAGATGGCATACACAGAAGCAGCTCGAGCAATGGTACAATATTATCAGGAAAAGCCTGCAATGGCAATGATAAATGGTGAGAAGCTGCTCATTCAAATGTCCACCAGGTTCAAAGAACTGCAGCTGAAGgtgagttgccatctcacttatccagctacaaagcattcatctgcttgctg Alignment from Exonerate_coding2genome GCTTTCTTGGAGATGGCTTACACAGAAGCCGCCCAGGCTATGGTCCAGTACTACCAAGAAAAGCCT------GCGATTATCAATGGCGAGAAGTTACTCATTCGCATGTCCACCAGATACAAGGAATTGCAGCTGAAG tgatagcccactgaattattatctcctaactttagagttgttatttctagGTATTCTTGGAGATGGCATACACAGAAGCAGCTCGAGCAATGGTACAATATTATCAGGAAAAGCCTGCAATGGCAATGATAAATGGTGAGAAGCTGCTCATTCAAATGTCCACCAGGTTCAAAGAACTGCAGCTGAAGgtgagttgccatctcacttatccagctacaaagcattcatctgcttgctg Alignment from GeneWise GCTTTCTTGGAGATGGCTTACACAGAAGCCGCCCAGGCTATGGTCCAGTACTACCAAGAAAAGCCTGCGATT------ATCAATGGCGAGAAGTTACTCATTCGCATGTCCACCAGATACAAGGAATTGCAGCTGAAG tgatagcccactgaattattatctcctaactttagagttgttatttctagGTATTCTTGGAGATGGCATACACAGAAGCAGCTCGAGCAATGGTACAATATTATCAGGAAAAGCCTGCAATGGCAATGATAAATGGTGAGAAGCTGCTCATTCAAATGTCCACCAGGTTCAAAGAACTGCAGCTGAAGgtgagttgccatctcacttatccagctacaaagcattcatctgcttgctg #### Rbp4_ID7523_4 --> 1 - 1 Original Alignment cAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACTGAAGATCCTGCCAAGTTCAAGATGAAGTACTGGGGTGTAGCCTCCTTTCTCCAGCGAGGAa gcccattaagtcaaaaccctttgccagctgtttttctcattttcttccagcAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTTACAGACACTGAAGATCCTGCCAAGTTCAAGATGAATTATTGGGGTGCAGCC---TTTGTCCAGCGAGGAagtaagaagctagggggtgattgtcgaggtgtgtgagggagtagggataat Alignment from CESAR cAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACTGAAGATCCTGCCAAGTTCAAGATGAAGTACTGGGGTGTAGCCTCCTTTCTCCAGCGAGGAa gcccattaagtcaaaaccctttgccagctgtttttctcattttcttccagcAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTTACAGACACTGAAGATCCTGCCAAGTTCAAGATGAATTATTGGGGTGCAGCC---TTTGTCCAGCGAGGAagtaagaagctagggggtgattgtcgaggtgtgtgagggagtagggataat Alignment from Spaln_aa2Genome CAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACTGAAGATCCTGCCAAGTTCAAGATGAAGTACTGGGGTGTAGCCTCCTTTCTCCAGCGAGGAA gcccattaagtcaaaaccctttgccagctgtttttctcattttcttccagCAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTTACAGACACTGAAGATCCTGCCAAGTTCAAGATGAATTATTGGGGT---GCAGCCTTTGTCCAGCGAGGAAgtaagaagctagggggtgattgtcgaggtgtgtgagggagtagggataat Alignment from Spaln_nt2Genome CAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACTGAAGATCCTGCCAAGTTCAAGATGAAGTACTGGGGTGTAGCCTCCTTTCTCCAGCGAGGAA gcccattaagtcaaaaccctttgccagctgtttttctcattttcttccagCAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTTACAGACACTGAAGATCCTGCCAAGTTCAAGATGAATTATTGGGGTGCAG---CCTTTGTCCAGCGAGGAAgtaagaagctagggggtgattgtcgaggtgtgtgagggagtagggataat Alignment from Pairagon CAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACTGAAGATCCTGCCAAGTTCAAGATGAAGTACTGGGGTGTAGCCTCCTTTCTCCAGCGAGGAA gcccattaagtcaaaaccctttgccagctgtttttctcattttcttccagCAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTTACAGACACTGAAGATCCTGCCAAGTTCAAGATGAATTATTGGGGTGCAG---CCTTTGTCCAGCGAGGAAgtaagaagctagggggtgattgtcgaggtgtgtgagggagtagggataat Alignment from Exonerate_protein2genome CAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACTGAAGATCCTGCCAAGTTCAAGATGAAGTACTGGGGTGTAGCCTCCTTTCTCCAGCGAGGAA gcccattaagtcaaaaccctttgccagctgtttttctcattttcttccagCAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTTACAGACACTGAAGATCCTGCCAAGTTCAAGATGAATTATTGGGGT---GCAGCCTTTGTCCAGCGAGGAAgtaagaagctagggggtgattgtcgaggtgtgtgagggagtagggataat Alignment from Exonerate_coding2genome CAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACTGAAGATCCTGCCAAGTTCAAGATGAAGTACTGGGGTGTAGCCTCCTTTCTCCAGCGAGGAA gcccattaagtcaaaaccctttgccagctgtttttctcattttcttccagCAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTTACAGACACTGAAGATCCTGCCAAGTTCAAGATGAATTATTGGGGT---GCAGCCTTTGTCCAGCGAGGAAgtaagaagctagggggtgattgtcgaggtgtgtgagggagtagggataat Alignment from GeneWise CAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACTGAAGATCCTGCCAAGTTCAAGATGAAGTACTGGGGTGTAGCCTCCTTTCTCCAGCGAGGAA gcccattaagtcaaaaccctttgccagctgtttttctcattttcttccagCAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTTACAGACACTGAAGATCCTGCCAAGTTCAAGATGAATTATTGGGGT---GCAGCCTTTGTCCAGCGAGGAAgtaagaagctagggggtgattgtcgaggtgtgtgagggagtagggataat #### Rbp4_ID7525_2 --> 0 - 0 Original Alignment GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT tatgggcattgctttgcttttaaccctgtcactcactgccaggcctacagGGCAGTCTCCGAGGTGCAATGGCATGGGTGTGGGCACTTGTGCTTCTGTCAGCCCTTGGAGGTGGTAGCACAGAGTATGAG------TTAAGCAGCTTTCAAGTTAAAGATAACTTTGACAAAGCTCATgtattattcaactaacttagttgggaggtgaacttaggcttttacatttt Alignment from CESAR GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT tatgggcattgctttgcttttaaccctgtcactcactgccaggcctacagGGCAGTCTCCGAGGTGCAATGGCATGGGTGTGGGCACTTGTGCTTCTGTCAGCCCTTGGAGGTGGTAGCACAGAGTATGAG------TTAAGCAGCTTTCAAGTTAAAGATAACTTTGACAAAGCTCATgtattattcaactaacttagttgggaggtgaacttaggcttaaatgttca Alignment from Spaln_aa2Genome GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT tatgggcattgctttgcttttaaccctgtcactcactgccaggcctacagGGCAGTCTCCGAGGTGCAATGGCATGGGTGTGGGCACTTGTGCTTCTGTCAGCCCTTGGAGGTGGTAGCACAGAGTATGAG------TTAAGCAGCTTTCAAGTTAAAGATAACTTTGACAAAGCTCATgtattattcaactaacttagttgggaggtgaacttaggcttttacatttt Alignment from Spaln_nt2Genome GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT tatgggcattgctttgcttttaaccctgtcactcactgccaggcctacagGGCAGTCTCCGAGGTGCAATGGCATGGGTGTGGGCACTTGTGCTTCTGTCAGCCCTTGGAGGTGGTAGCACAGAGTATGA------GTTAAGCAGCTTTCAAGTTAAAGATAACTTTGACAAAGCTCATgtattattcaactaacttagttgggaggtgaacttaggcttttacatttt Alignment from Pairagon GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT tatgggcattgctttgcttttaaccctgtcactcactgccaggcctacagGGCAGTCTCCGAGGTGCAATGGCATGGGTGTGGGCACTTGTGCTTCTGTCAGCCCTTGGAGGTGGTAGCACAGAGTATGAGT------TAAGCAGCTTTCAAGTTAAAGATAACTTTGACAAAGCTCATgtattattcaactaacttagttgggaggtgaacttaggcttttacatttt Alignment from Exonerate_protein2genome GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT tatgggcattgctttgcttttaaccctgtcactcactgccaggcctacagGGCAGTCTCCGAGGTGCAATGGCATGGGTGTGGGCACTTGTGCTTCTGTCAGCCCTTGGAGGTGGTAGCACAGAGTATGAG------TTAAGCAGCTTTCAAGTTAAAGATAACTTTGACAAAGCTCATgtattattcaactaacttagttgggaggtgaacttaggcttttacatttt Alignment from Exonerate_coding2genome tatgggcattgctttgcttttaaccctgtcactcactgccaggcctacagggcagtctccgaggtgcaatggcatgggtgtgggcacttgtgcttctgtcagcccttggaggtggtagcacagagtatgagttaagcagctttcaagttaaagataactttgacaaagctcatgtattattcaactaacttagttgggaggtgaacttaggcttttacatttt Alignment from GeneWise GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT tatgggcattgctttgcttttaaccctgtcactcactgccaggcctacagGGCAGTCTCCGAGGTGCAATGGCATGGGTGTGGGCACTTGTGCTTCTGTCAGCCCTTGGAGGTGGTAGCACAGAGTATGAG------TTAAGCAGCTTTCAAGTTAAAGATAACTTTGACAAAGCTCATgtattattcaactaacttagttgggaggtgaacttaggcttttacatttt #### Rce1_ID575_7 --> 2 - 1 Original Alignment cgTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAg ggagggcatggtaggtgggattttatgcttttctgcttgtctaaacacagcaTTTCAATTCTCGTACACTGCCATATTTGGTGCTTATACAGCATTCCTCTTCATCCACACAggtaaagtctcaccccaccatgaccaagagcaaaagattgagttcatcacc Alignment from CESAR cgTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAg ggagggcatggtaggtgggattttatgcttttctgcttgtctaaacacagcaTTTCAATTCTCGTACACTGCCATATTTGGTGCTTATACAGCATTCCTCTTCATCCACACAggtaaagtctcaccccaccatgaccaagagcaaaagattgagttcatcacc Alignment from Spaln_aa2Genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG ggagggcatggtaggtgggattttatgcttttctgcttgtctaaacacagCATTTCAATTCTCGTACACTGCCATATTTGGTGCTTATACAGCATTCCTCTTCATCCACACAGgtaaagtctcaccccaccatgaccaagagcaaaagattgagttcatcacc Alignment from Spaln_nt2Genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG ggagggcatggtaggtgggattttatgcttttctgcttgtctaaacacagCATTTCAATTCTCGTACACTGCCATATTTGGTGCTTATACAGCATTCCTCTTCATCCACACAGgtaaagtctcaccccaccatgaccaagagcaaaagattgagttcatcacc Alignment from Pairagon CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG ggagggcatggtaggtgggattttatgcttttctgcttgtctaaacacagCATTTCAATTCTCGTACACTGCCATATTTGGTGCTTATACAGCATTCCTCTTCATCCACACAGgtaaagtctcaccccaccatgaccaagagcaaaagattgagttcatcacc Alignment from Exonerate_protein2genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG ggagggcatggtaggtgggattttatgcttttctgcttgtctaaacacagCATTTCAATTCTCGTACACTGCCATATTTGGTGCTTATACAGCATTCCTCTTCATCCACACAGgtaaagtctcaccccaccatgaccaagagcaaaagattgagttcatcacc Alignment from Exonerate_coding2genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG ggagggcatggtaggtgggattttatgcttttctgcttgtctaaacacagCATTTCAATTCTCGTACACTGCCATATTTGGTGCTTATACAGCATTCCTCTTCATCCACACAGgtaaagtctcaccccaccatgaccaagagcaaaagattgagttcatcacc Alignment from GeneWise CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG ggagggcatggtaggtgggattttatgcttttctgcttgtctaaacacagCATTTCAATTCTCGTACACTGCCATATTTGGTGCTTATACAGCATTCCTCTTCATCCACACAGgtaaagtctcaccccaccatgaccaagagcaaaagattgagttcatcacc #### Rce1_ID576_6 --> 2 - 1 Original Alignment CTTTTTTGGAGTCg ccCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAg CTTTCTTGGGGTTggtaaatctgttgtgcgttagccttcttttcttgtagccCATTTTCAGCACATTATAGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGAGCATCTTTGTGTCTACAggtaattgggaaaagtagtaatgaagagaaaaaagggctggatcttgatag Alignment from CESAR CTTTTTTGGAGTCg ccCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAg CTTTCTTGGGGTTggtaagtctgttgtgcgttagccttcttttcttgtagccCATTTTCAGCACATTATAGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGAGCATCTTTGTGTCTACAggtaattgggaaaagtagtaatgaagagaaaaaagggctggatcttgatag Alignment from Spaln_aa2Genome CTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CTTTCTTGGGGTTGgtaaatctgttgtgcgttagccttcttttcttgtagCCCATTTTCAGCACATTATAGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGAGCATCTTTGTGTCTACAGgtaattgggaaaagtagtaatgaagagaaaaaagggctggatcttgatag Alignment from Spaln_nt2Genome CTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CTTTCTTGGGGTTGgtaaatctgttgtgcgttagccttcttttcttgtagCCCATTTTCAGCACATTATAGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGAGCATCTTTGTGTCTACAGgtaattgggaaaagtagtaatgaagagaaaaaagggctggatcttgatag Alignment from Pairagon CTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CTTTCTTGGGGTTGgtaaatctgttgtgcgttagccttcttttcttgtagCCCATTTTCAGCACATTATAGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGAGCATCTTTGTGTCTACAGgtaattgggaaaagtagtaatgaagagaaaaaagggctggatcttgatag Alignment from Exonerate_protein2genome CTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CTTTCTTGGGGTTGgtaaatctgttgtgcgttagccttcttttcttgtagCCCATTTTCAGCACATTATAGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGAGCATCTTTGTGTCTACAGgtaattgggaaaagtagtaatgaagagaaaaaagggctggatcttgatag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CTTTCTTGGGGTTGgtaaatctgttgtgcgttagccttcttttcttgtagCCCATTTTCAGCACATTATAGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGAGCATCTTTGTGTCTACAGgtaattgggaaaagtagtaatgaagagaaaaaagggctggatcttgatag #### Rce1_ID579_3 --> 0 - 0 Original Alignment CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG cataccgaggaatcttttgctcacaacatttaatgtcttttggtggacagCCTGGAACATCACTGCTCATCTTGATGGGTTTCAGGCTTGAGGGCATTTTCCCTGCAGCATTGCTGCCACTGCTATTAACTATGgtgagtcatgcttggtatttttaccacattattgtaacaagtcacttaat Alignment from CESAR CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG cataccgaggaatcttttgctcacaacatttaatgtcttttggtggacagCCTGGAACATCACTGCTCATCTTGATGGGTTTCAGGCTTGAGGGCATTTTCCCTGCAGCATTGCTGCCACTGCTATTAACTATGgtgagtcatgcttggtatttttaccacattattgtaacaagtcacttaat Alignment from Spaln_aa2Genome CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG cataccgaggaatcttttgctcacaacatttaatgtcttttggtggacagCCTGGAACATCACTGCTCATCTTGATGGGTTTCAGGCTTGAGGGCATTTTCCCTGCAGCATTGCTGCCACTGCTATTAACTATGgtgagtcatgcttggtatttttaccacattattgtaacaagtcacttaat Alignment from Spaln_nt2Genome CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG cataccgaggaatcttttgctcacaacatttaatgtcttttggtggacagCCTGGAACATCACTGCTCATCTTGATGGGTTTCAGGCTTGAGGGCATTTTCCCTGCAGCATTGCTGCCACTGCTATTAACTATGgtgagtcatgcttggtatttttaccacattattgtaacaagtcacttaat Alignment from Pairagon CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG cataccgaggaatcttttgctcacaacatttaatgtcttttggtggacagCCTGGAACATCACTGCTCATCTTGATGGGTTTCAGGCTTGAGGGCATTTTCCCTGCAGCATTGCTGCCACTGCTATTAACTATGgtgagtcatgcttggtatttttaccacattattgtaacaagtcacttaat Alignment from Exonerate_protein2genome CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG cataccgaggaatcttttgctcacaacatttaatgtcttttggtggacagCCTGGAACATCACTGCTCATCTTGATGGGTTTCAGGCTTGAGGGCATTTTCCCTGCAGCATTGCTGCCACTGCTATTAACTATGgtgagtcatgcttggtatttttaccacattattgtaacaagtcacttaat Alignment from Exonerate_coding2genome CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATGATCCTTTTCCTGGGTCCACTGATGCAGCTCTCT cataccgaggaatcttttgctcacaacatttaatgtcttttggtggacagCCTGGAACATCACTGCTCATCTTGATGGGTTTCAGGCTTGAGGGCATTTTCCCTGCAGCATTGCTGCCACTGCTATTAACTATGGTGAGTCATGCTTGGTATTTTTACCACATTATTgtaacaagtcacttaat Alignment from GeneWise CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG cataccgaggaatcttttgctcacaacatttaatgtcttttggtggacagCCTGGAACATCACTGCTCATCTTGATGGGTTTCAGGCTTGAGGGCATTTTCCCTGCAGCATTGCTGCCACTGCTATTAACTATGgtgagtcatgcttggtatttttaccacattattgtaacaagtcacttaat #### Rce1_ID580_2 --> 1 - 0 Original Alignment gGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaattaccccccagatctgcatctgcctctctgttttgcaggGACCACCCTTCTGTAGTGAGGCGGCATTTTACCGGTGTTCTGATTGTATCTAGCTTGTCACCTCTTTGTGTGCTGCTG------GAACTCACTGGCATCCAGgtgtgttgaagaggatgatatcctgggcagcataccgaggaatcttttgc Alignment from CESAR gGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaattaccccccagatctgcatctgcctctctgttttgcaggGACCACCCTTCTGTAGTGAGGCGGCATTTTACCGGTGTTCTGATTGTATCTAGCTTGTCACCTCTTTGTGTGCTGCTG------GAACTCACTGGCATCCAGgtgtgttgaagaggatgatatcctgggcagcataccgaggaatcttttgc Alignment from Spaln_aa2Genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaattaccccccagatctgcatctgcctctctgttttgcagGGACCACCCTTCTGTAGTGAGGCGGCATTTTACCGGTGTTCTGATTGTATCTAGCTTGTCACCTCTTTGTGTGCTGCTG------GAACTCACTGGCATCCAGgtgtgttgaagaggatgatatcctgggcagcataccgaggaatcttttgc Alignment from Spaln_nt2Genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaattaccccccagatctgcatctgcctctctgttttgcagGGACCACCCTTCTGTAGTGAGGCGGCATTTTACCGGTGTTCTGATTGTATCTAGCTTGTCACCTCTTTGTGTGCTGCT------GGAACTCACTGGCATCCAGgtgtgttgaagaggatgatatcctgggcagcataccgaggaatcttttgc Alignment from Pairagon GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaattaccccccagatctgcatctgcctctctgttttgcagGGACCACCCTTCTGTAGTGAGGCGGCATTTTACCGGTGTTCTGATTGTATCTAGCTTGTCACCTCTTTGTGTGCTGCT------GGAACTCACTGGCATCCAGgtgtgttgaagaggatgatatcctgggcagcataccgaggaatcttttgc Alignment from Exonerate_protein2genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaattaccccccagatctgcatctgcctctctgttttgcagGGACCACCCTTCTGTAGTGAGGCGGCATTTTACCGGTGTTCTGATTGTATCTAGCTTGTCACCTCTTTGTGTGCTGCTG------GAACTCACTGGCATCCAGgtgtgttgaagaggatgatatcctgggcagcataccgaggaatcttttgc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaattaccccccagatctgcatctgcctctctgttttgcagGGACCACCCTTCTGTAGTGAGGCGGCATTTTACCGGTGTTCTGATTGTATCTAGCTTGTCACCTCTTTGTGTGCTGCTG------GAACTCACTGGCATCCAGgtgtgttgaagaggatgatatcctgggcagcataccgaggaatcttttgc #### Rcl1_ID6214_4 --> 0 - 0 Original Alignment GTTGATGTTCTTAAAGCGACAGCGCTCCCTCTACTGAAACAGTTTGGGATCGATGGAGAATCATTTGAGCTAAAG tgttcacttttaatttatcttccaaggcagagtggcctttctttttaaagGCTGATGTTATTAAAGCAACAGCTCTCCCTTTACTCAAACATTTTGGGATTGACAGAGACGCATTTAAGCTTAAGgtgagttgaaataaatccaaacatgtgacaggtttagtctattagccatt Alignment from CESAR GTTGATGTTCTTAAAGCGACAGCGCTCCCTCTACTGAAACAGTTTGGGATCGATGGAGAATCATTTGAGCTAAAG tgttcacttttaatttatcttccaaggcagagtggcctttctttttaaagGCTGATGTTATTAAAGCAACAGCTCTCCCTTTACTCAAACATTTTGGGATTGACAGAGACGCATTTAAGCTTAAGgtgagttgaaataaatccaaacatgtgacaggtttagtctattagccatt Alignment from Spaln_aa2Genome GTTGATGTTCTTAAAGCGACAGCGCTCCCTCTACTGAAACAGTTTGGGATCGATGGAGAATCATTTGAGCTAAAG tgttcacttttaatttatcttccaaggcagagtggcctttctttttaaagGCTGATGTTATTAAAGCAACAGCTCTCCCTTTACTCAAACATTTTGGGATTGACAGAGACGCATTTAAGCTTAAGgtgagttgaaataaatccaaacatgtgacaggtttagtctattagccatt Alignment from Spaln_nt2Genome GTTGATGTTCTTAAAGCGACAGCGCTCCCTCTACTGAAACAGTTTGGGATCGATGGAGAATCATTTGAGCTAAAG tgttcacttttaatttatcttccaaggcagagtggcctttctttttaaagGCTGATGTTATTAAAGCAACAGCTCTCCCTTTACTCAAACATTTTGGGATTGACAGAGACGCATTTAAGCTTAAGgtgagttgaaataaatccaaacatgtgacaggtttagtctattagccatt Alignment from Pairagon GTTGATGTTCTTAAAGCGACAGCGCTCCCTCTACTGAAACAGTTTGGGATCGATGGAGAATCATTTGAGCTAAAG tgttcacttttaatttatcttccaaggcagagtggcctttctttttaaagGCTGATGTTATTAAAGCAACAGCTCTCCCTTTACTCAAACATTTTGGGATTGACAGAGACGCATTTAAGCTTAAGgtgagttgaaataaatccaaacatgtgacaggtttagtctattagccatt Alignment from Exonerate_protein2genome GTTGATGTTCTTAAAGCGACAGCGCTCCCTCTACTGAAACAGTTTGGGATCGATGGAGAATCATTTGAGCTAAAG tgttcacttttaatttatcttccaaggcagagtggcctttctttttaaagGCTGATGTTATTAAAGCAACAGCTCTCCCTTTACTCAAACATTTTGGGATTGACAGAGACGCATTTAAGCTTAAGgtgagttgaaataaatccaaacatgtgacaggtttagtctattagccatt Alignment from Exonerate_coding2genome tgttcacttttaatttatcttccaaggcagagtggcctttctttttaaaggctgatgttattaaagcaacagctctccctttactcaaacattttgggattgacagagacgcatttaagcttaaggtgagttgaaataaatccaaacatgtgacaggtttagtctattagccatt Alignment from GeneWise GTTGATGTTCTTAAAGCGACAGCGCTCCCTCTACTGAAACAGTTTGGGATCGATGGAGAATCATTTGAGCTAAAG tgttcacttttaatttatcttccaaggcagagtggcctttctttttaaagGCTGATGTTATTAAAGCAACAGCTCTCCCTTTACTCAAACATTTTGGGATTGACAGAGACGCATTTAAGCTTAAGgtgagttgaaataaatccaaacatgtgacaggtttagtctattagccatt #### Rcl1_ID6215_5 --> 0 - 2 Original Alignment ATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGCGAAGTGCTTTTCTCCTGCCCCGTGAGGAAGGTCCTGAAGCCTGTCCAGCTCACAGACCCAGGAAAAATCAAGCGGATCAGAGGAATGgc tcctggctgcttgctccagtctctgctgatctctgtgtttttcattgaagATCTTACATCGGGGAATGCCCCCTGGGGGAGGGGGTGAGGTACTTTTCTCCTGTCCTGTTAGGAAGGTCTTGAAGCCTGTTCAGCTCACGGACCCAGAGAAGATCAAGCGGATCAGAGGAACGgcgtgagtcctaggtagaggtcctcgcccatctatttttactcctcatctta Alignment from CESAR ATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGCGAAGTGCTTTTCTCCTGCCCCGTGAGGAAGGTCCTGAAGCCTGTCCAGCTCACAGACCCAGGAAAAATCAAGCGGATCAGAGGAATGgc tcctggctgcttgctccagtctctgctgatctctgtgtttttcattgaagATCTTACATCGGGGAATGCCCCCTGGGGGAGGGGGTGAGGTACTTTTCTCCTGTCCTGTTAGGAAGGTCTTGAAGCCTGTTCAGCTCACGGACCCAGAGAAGATCAAGCGGATCAGAGGAACGgcgtgagtcctaggtagaggtcctcgcccatctatttttactcctcatctta Alignment from Spaln_aa2Genome ATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGCGAAGTGCTTTTCTCCTGCCCCGTGAGGAAGGTCCTGAAGCCTGTCCAGCTCACAGACCCAGGAAAAATCAAGCGGATCAGAGGAATGGC tcctggctgcttgctccagtctctgctgatctctgtgtttttcattgaagATCTTACATCGGGGAATGCCCCCTGGGGGAGGGGGTGAGGTACTTTTCTCCTGTCCTGTTAGGAAGGTCTTGAAGCCTGTTCAGCTCACGGACCCAGAGAAGATCAAGCGGATCAGAGGAACGGCgtgagtcctaggtagaggtcctcgcccatctatttttactcctcatctta Alignment from Spaln_nt2Genome ATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGCGAAGTGCTTTTCTCCTGCCCCGTGAGGAAGGTCCTGAAGCCTGTCCAGCTCACAGACCCAGGAAAAATCAAGCGGATCAGAGGAATGGC tcctggctgcttgctccagtctctgctgatctctgtgtttttcattgaagATCTTACATCGGGGAATGCCCCCTGGGGGAGGGGGTGAGGTACTTTTCTCCTGTCCTGTTAGGAAGGTCTTGAAGCCTGTTCAGCTCACGGACCCAGAGAAGATCAAGCGGATCAGAGGAACGGCgtgagtcctaggtagaggtcctcgcccatctatttttactcctcatctta Alignment from Pairagon ATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGCGAAGTGCTTTTCTCCTGCCCCGTGAGGAAGGTCCTGAAGCCTGTCCAGCTCACAGACCCAGGAAAAATCAAGCGGATCAGAGGAATGGC tcctggctgcttgctccagtctctgctgatctctgtgtttttcattgaagATCTTACATCGGGGAATGCCCCCTGGGGGAGGGGGTGAGGTACTTTTCTCCTGTCCTGTTAGGAAGGTCTTGAAGCCTGTTCAGCTCACGGACCCAGAGAAGATCAAGCGGATCAGAGGAACGGCgtgagtcctaggtagaggtcctcgcccatctatttttactcctcatctta Alignment from Exonerate_protein2genome ATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGCGAAGTGCTTTTCTCCTGCCCCGTGAGGAAGGTCCTGAAGCCTGTCCAGCTCACAGACCCAGGAAAAATCAAGCGGATCAGAGGAATGGC tcctggctgcttgctccagtctctgctgatctctgtgtttttcattgaagATCTTACATCGGGGAATGCCCCCTGGGGGAGGGGGTGAGGTACTTTTCTCCTGTCCTGTTAGGAAGGTCTTGAAGCCTGTTCAGCTCACGGACCCAGAGAAGATCAAGCGGATCAGAGGAACGGCgtgagtcctaggtagaggtcctcgcccatctatttttactcctcatctta Alignment from Exonerate_coding2genome TGGGATCGATGGAGAATCATTTGAGCTAAAGATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGCGAAGTGCTTTTCTCCTGCCCCGTGAGGAAGGTCCTGAAGCCTGTCCAGCTCACAGACCCAGGAAAAATCAAGCGGATCAGAGGAATGGC tcctggctgcttgctccagTCTCTGCTGATCTCTGTGTTTTTCATTGAAGATCTTACATCGGGGAATGCCCCCTGGGGGAGGGGGTGAGGTACTTTTCTCCTGTCCTGTTAGGAAGGTCTTGAAGCCTGTTCAGCTCACGGACCCAGAGAAGATCAAGCGGATCAGAGGAACGGCgtgagtcctaggtagaggtcctcgcccatctatttttactcctcatctta Alignment from GeneWise ATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGCGAAGTGCTTTTCTCCTGCCCCGTGAGGAAGGTCCTGAAGCCTGTCCAGCTCACAGACCCAGGAAAAATCAAGCGGATCAGAGGAATGGC tcctggctgcttgctccagtctctgctgatctctgtgtttttcattgaagATCTTACATCGGGGAATGCCCCCTGGGGGAGGGGGTGAGGTACTTTTCTCCTGTCCTGTTAGGAAGGTCTTGAAGCCTGTTCAGCTCACGGACCCAGAGAAGATCAAGCGGATCAGAGGAACGGCgtgagtcctaggtagaggtcctcgcccatctatttttactcctcatctta #### Rcl1_ID6219_8 --> 0 - 2 Original Alignment GGTGGATGCGTAGACTCGACCAAC---CAAAGTCTAGTTCTGCTGCTCATGACCCTTGGACAGCAGGACGTTTCCAAAGTCCTGCTGGGACCACTCTCACCCTACac ccaaaatctcccaatggcaacagtatcttttcttccctctgttccctcagGGTGGGTGTGTATACTCCACTAATCACCAAAGCTTAGTCCTGTTGCTCATGACCTTGGGTCCACAAGATGTTTCAAAAGTCTTGCTGGGACCTCTATCACCCTATacgtgagttatgtactggctttccattttccatggctgcccaggagttaatt Alignment from CESAR GGTGGATGCGTAGACTCGACCAAC---CAAAGTCTAGTTCTGCTGCTCATGACCCTTGGACAGCAGGACGTTTCCAAAGTCCTGCTGGGACCACTCTCACCCTACac ccaaaatctcccaatggcaacagtatcttttcttccctctgttccctcagGGTGGGTGTGTATACTCCACTAATCACCAAAGCTTAGTCCTGTTGCTCATGACCTTGGGTCCACAAGATGTTTCAAAAGTCTTGCTGGGACCTCTATCACCCTATacgtgagttatgtactggctttccattttccatggctgcccaggagttaatt Alignment from Spaln_aa2Genome GGTGGATGCGTAGACTCGACCAAC---CAAAGTCTAGTTCTGCTGCTCATGACCCTTGGACAGCAGGACGTTTCCAAAGTCCTGCTGGGACCACTCTCACCCTACAC ccaaaatctcccaatggcaacagtatcttttcttccctctgttccctcagGGTGGGTGTGTATACTCCACTAATCACCAAAGCTTAGTCCTGTTGCTCATGACCTTGGGTCCACAAGATGTTTCAAAAGTCTTGCTGGGACCTCTATCACCCTATACgtgagttatgtactggctttccattttccatggctgcccaggagttaatt Alignment from Spaln_nt2Genome GGTGGATGCGTAGACTCGACCAA---CCAAAGTCTAGTTCTGCTGCTCATGACCCTTGGACAGCAGGACGTTTCCAAAGTCCTGCTGGGACCACTCTCACCCTACAC ccaaaatctcccaatggcaacagtatcttttcttccctctgttccctcagGGTGGGTGTGTATACTCCACTAATCACCAAAGCTTAGTCCTGTTGCTCATGACCTTGGGTCCACAAGATGTTTCAAAAGTCTTGCTGGGACCTCTATCACCCTATACgtgagttatgtactggctttccattttccatggctgcccaggagttaatt Alignment from Pairagon GGTGGATGCGTAGACTCGACCA---ACCAAAGTCTAGTTCTGCTGCTCATGACCCTTGGACAGCAGGACGTTTCCAAAGTCCTGCTGGGACCACTCTCACCCTACAC ccaaaatctcccaatggcaacagtatcttttcttccctctgttccctcagGGTGGGTGTGTATACTCCACTAATCACCAAAGCTTAGTCCTGTTGCTCATGACCTTGGGTCCACAAGATGTTTCAAAAGTCTTGCTGGGACCTCTATCACCCTATACgtgagttatgtactggctttccattttccatggctgcccaggagttaatt Alignment from Exonerate_protein2genome GGTGGATGCGTAGACTCGACCAAC---CAAAGTCTAGTTCTGCTGCTCATGACCCTTGGACAGCAGGACGTTTCCAAAGTCCTGCTGGGACCACTCTCACCCTACAC ccaaaatctcccaatggcaacagtatcttttcttccctctgttccctcagGGTGGGTGTGTATACTCCACTAATCACCAAAGCTTAGTCCTGTTGCTCATGACCTTGGGTCCACAAGATGTTTCAAAAGTCTTGCTGGGACCTCTATCACCCTATACgtgagttatgtactggctttccattttccatggctgcccaggagttaatt Alignment from Exonerate_coding2genome GGTGGATGCGTAGACTCGACCAAC---CAAAGTCTAGTTCTGCTGCTCATGACCCTTGGACAGCAGGACGTTTCCAAAGTCCTGCTGGGACCACTCTCACCCTACAC ccaaaatctcccaatggcaacagtatcttttcttccctctgttccctcagGGTGGGTGTGTATACTCCACTAATCACCAAAGCTTAGTCCTGTTGCTCATGACCTTGGGTCCACAAGATGTTTCAAAAGTCTTGCTGGGACCTCTATCACCCTATACgtgagttatgtactggctttccattttccatggctgcccaggagttaatt Alignment from GeneWise GGTGGATGCGTAGACTCGACCAAC---CAAAGTCTAGTTCTGCTGCTCATGACCCTTGGACAGCAGGACGTTTCCAAAGTCCTGCTGGGACCACTCTCACCCTACAC ccaaaatctcccaatggcaacagtatcttttcttccctctgttccctcagGGTGGGTGTGTATACTCCACTAATCACCAAAGCTTAGTCCTGTTGCTCATGACCTTGGGTCCACAAGATGTTTCAAAAGTCTTGCTGGGACCTCTATCACCCTATACgtgagttatgtactggctttccattttccatggctgcccaggagttaatt #### Rcor2_ID2096_7 --> 0 - 0 Original Alignment CCTCTGCCATCCAGACCTCTGAATGCACGGCCTGGTCCTGGGAAGAAGGAGGTTCAGATATCTCAGTATCGCCACCACCCACTTCGAACTCGGAGACGTCCGCCCAAGGGCATGTACCTGAGTCCTGAAGGCCTCACTGCAGTATCGGGAAGCCCAGACCTCGCTAACCTCACACTCCGAGGTCTTGACTCACAGCTCATCTCTCTTAAGCGCCAG tcacacagcataagtccaatgatatttctttttttttttttaacttttagCCTCTACCATCCAGTCCTTTGAATGCCCGGCCTGGACCTGGAAAGAAAGAGGTTCAAATCTCTCAATATTGCCATCACCCGCTTCGAACTCGGAGACGTCCACCTAAGGGCATGTACCTAAGTCCGGAAGGCCTCACGGCTGTATCAGGGAGCCCGGACCTTGCTAACCTGACGCTCCAAGGATTAGATTCACAGCTCATCTCTCTTAAGTGTCAAgtctgcgcataaatctggtaatcaaagggggtaggctgctgattaataaa Alignment from CESAR CCTCTGCCATCCAGACCTCTGAATGCACGGCCTGGTCCTGGGAAGAAGGAGGTTCAGATATCTCAGTATCGCCACCACCCACTTCGAACTCGGAGACGTCCGCCCAAGGGCATGTACCTGAGTCCTGAAGGCCTCACTGCAGTATCGGGAAGCCCAGACCTCGCTAACCTCACACTCCGAGGTCTTGACTCACAGCTCATCTCTCTTAAGCGCCAG tcacacagcataagtccaatgatatttctttttttttttttaacttttagCCTCTACCATCCAGTCCTTTGAATGCCCGGCCTGGACCTGGAAAGAAAGAGGTTCAAATCTCTCAATATTGCCATCACCCGCTTCGAACTCGGAGACGTCCACCTAAGGGCATGTACCTAAGTCCGGAAGGCCTCACGGCTGTATCAGGGAGCCCGGACCTTGCTAACCTGACGCTCCAAGGATTAGATTCACAGCTCATCTCTCTTAAGTGTCAAgtctgcgcataaatctggtaatcaaagggggtaggctgctgattaataaa Alignment from Spaln_aa2Genome CCTCTGCCATCCAGACCTCTGAATGCACGGCCTGGTCCTGGGAAGAAGGAGGTTCAGATATCTCAGTATCGCCACCACCCACTTCGAACTCGGAGACGTCCGCCCAAGGGCATGTACCTGAGTCCTGAAGGCCTCACTGCAGTATCGGGAAGCCCAGACCTCGCTAACCTCACACTCCGAGGTCTTGACTCACAGCTCATCTCTCTTAAGCGCCAG tcacacagcataagtccaatgatatttctttttttttttttaacttttagCCTCTACCATCCAGTCCTTTGAATGCCCGGCCTGGACCTGGAAAGAAAGAGGTTCAAATCTCTCAATATTGCCATCACCCGCTTCGAACTCGGAGACGTCCACCTAAGGGCATGTACCTAAGTCCGGAAGGCCTCACGGCTGTATCAGGGAGCCCGGACCTTGCTAACCTGACGCTCCAAGGATTAGATTCACAGCTCATCTCTCTTAAGTGTCAAgtctgcgcataaatctggtaatcaaagggggtaggctgctgattaataaa Alignment from Spaln_nt2Genome CCTCTGCCATCCAGACCTCTGAATGCACGGCCTGGTCCTGGGAAGAAGGAGGTTCAGATATCTCAGTATCGCCACCACCCACTTCGAACTCGGAGACGTCCGCCCAAGGGCATGTACCTGAGTCCTGAAGGCCTCACTGCAGTATCGGGAAGCCCAGACCTCGCTAACCTCACACTCCGAGGTCTTGACTCACAGCTCATCTCTCTTAAGCGCCAG tcacacagcataagtccaatgatatttctttttttttttttaacttttagCCTCTACCATCCAGTCCTTTGAATGCCCGGCCTGGACCTGGAAAGAAAGAGGTTCAAATCTCTCAATATTGCCATCACCCGCTTCGAACTCGGAGACGTCCACCTAAGGGCATGTACCTAAGTCCGGAAGGCCTCACGGCTGTATCAGGGAGCCCGGACCTTGCTAACCTGACGCTCCAAGGATTAGATTCACAGCTCATCTCTCTTAAGTGTCAAgtctgcgcataaatctggtaatcaaagggggtaggctgctgattaataaa Alignment from Pairagon CCTCTGCCATCCAGACCTCTGAATGCACGGCCTGGTCCTGGGAAGAAGGAGGTTCAGATATCTCAGTATCGCCACCACCCACTTCGAACTCGGAGACGTCCGCCCAAGGGCATGTACCTGAGTCCTGAAGGCCTCACTGCAGTATCGGGAAGCCCAGACCTCGCTAACCTCACACTCCGAGGTCTTGACTCACAGCTCATCTCTCTTAAGCGCCAG tcacacagcataagtccaatgatatttctttttttttttttaacttttagCCTCTACCATCCAGTCCTTTGAATGCCCGGCCTGGACCTGGAAAGAAAGAGGTTCAAATCTCTCAATATTGCCATCACCCGCTTCGAACTCGGAGACGTCCACCTAAGGGCATGTACCTAAGTCCGGAAGGCCTCACGGCTGTATCAGGGAGCCCGGACCTTGCTAACCTGACGCTCCAAGGATTAGATTCACAGCTCATCTCTCTTAAGTGTCAAgtctgcgcataaatctggtaatcaaagggggtaggctgctgattaataaa Alignment from Exonerate_protein2genome CCTCTGCCATCCAGACCTCTGAATGCACGGCCTGGTCCTGGGAAGAAGGAGGTTCAGATATCTCAGTATCGCCACCACCCACTTCGAACTCGGAGACGTCCGCCCAAGGGCATGTACCTGAGTCCTGAAGGCCTCACTGCAGTATCGGGAAGCCCAGACCTCGCTAACCTCACACTCCGAGGTCTTGACTCACAGCTCATCTCTCTTAAGCGCCAG tcacacagcataagtccaatgatatttctttttttttttttaacttttagCCTCTACCATCCAGTCCTTTGAATGCCCGGCCTGGACCTGGAAAGAAAGAGGTTCAAATCTCTCAATATTGCCATCACCCGCTTCGAACTCGGAGACGTCCACCTAAGGGCATGTACCTAAGTCCGGAAGGCCTCACGGCTGTATCAGGGAGCCCGGACCTTGCTAACCTGACGCTCCAAGGATTAGATTCACAGCTCATCTCTCTTAAGTGTCAAgtctgcgcataaatctggtaatcaaagggggtaggctgctgattaataaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCTCTGCCATCCAGACCTCTGAATGCACGGCCTGGTCCTGGGAAGAAGGAGGTTCAGATATCTCAGTATCGCCACCACCCACTTCGAACTCGGAGACGTCCGCCCAAGGGCATGTACCTGAGTCCTGAAGGCCTCACTGCAGTATCGGGAAGCCCAGACCTCGCTAACCTCACACTCCGAGGTCTTGACTCACAGCTCATCTCTCTTAAGCGCCAG tcacacagcataagtccaatgatatttctttttttttttttaacttttagCCTCTACCATCCAGTCCTTTGAATGCCCGGCCTGGACCTGGAAAGAAAGAGGTTCAAATCTCTCAATATTGCCATCACCCGCTTCGAACTCGGAGACGTCCACCTAAGGGCATGTACCTAAGTCCGGAAGGCCTCACGGCTGTATCAGGGAGCCCGGACCTTGCTAACCTGACGCTCCAAGGATTAGATTCACAGCTCATCTCTCTTAAGTGTCAAgtctgcgcataaatctggtaatcaaagggggtaggctgctgattaataaa #### Rcor2_ID2098_9 --> 0 - 1 Original Alignment GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAg cttctcccatttttagctttcattgatatctggtcttgcttaccttccagGCTAATACCAAATTCAACTCCCGCTGGACCACTGATGAGGAACTTTTAGCAGTTCAAggtaacttatgctactgtgggattccaagaatctggagatgattgagaccc Alignment from CESAR GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAg cttctcccatttttagctttcattgatatctggtcttgcttaccttccagGCTAATACCAAATTCAACTCCCGCTGGACCACTGATGAGGAACTTTTAGCAGTTCAAggtaacttatgctactgtgggattccaagaatctggagatgattgagaccc Alignment from Spaln_aa2Genome GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG cttctcccatttttagctttcattgatatctggtcttgcttaccttccagGCTAATACCAAATTCAACTCCCGCTGGACCACTGATGAGGAACTTTTAGCAGTTCAAGgtaacttatgctactgtgggattccaagaatctggagatgattgagaccc Alignment from Spaln_nt2Genome GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG cttctcccatttttagctttcattgatatctggtcttgcttaccttccagGCTAATACCAAATTCAACTCCCGCTGGACCACTGATGAGGAACTTTTAGCAGTTCAAGgtaacttatgctactgtgggattccaagaatctggagatgattgagaccc Alignment from Pairagon GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG cttctcccatttttagctttcattgatatctggtcttgcttaccttccagGCTAATACCAAATTCAACTCCCGCTGGACCACTGATGAGGAACTTTTAGCAGTTCAAGgtaacttatgctactgtgggattccaagaatctggagatgattgagaccc Alignment from Exonerate_protein2genome GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG cttctcccatttttagctttcattgatatctggtcttgcttaccttccagGCTAATACCAAATTCAACTCCCGCTGGACCACTGATGAGGAACTTTTAGCAGTTCAAGgtaacttatgctactgtgggattccaagaatctggagatgattgagaccc Alignment from Exonerate_coding2genome CTCCGCCAAGCACTGGAGGGCGGCATTGACCCTCTCCGCCCCCCTG--AGGCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG CTTCTCCCATTTTTAGCTTTCATTGATATCTGGTCTTGCTTACCTTCCAGGCTAATACCAAATTCAACTCCCGCTGGACCACTGATGAGGAACTTTTAGCAGTTCAAGgtaacttatgctactgtgggattccaagaatctggagatgattgagaccc Alignment from GeneWise GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG cttctcccatttttagctttcattgatatctggtcttgcttaccttccagGCTAATACCAAATTCAACTCCCGCTGGACCACTGATGAGGAACTTTTAGCAGTTCAAGgtaacttatgctactgtgggattccaagaatctggagatgattgagaccc #### Rela_ID1131_8 --> 2 - 1 Original Alignment aaGACATTGAGGTGTATTTCACGGGACCAGGCTGGGAGGCACGAGGCTCCTTTTCTCAAGCTGATGTGCATCGGCAAGTGGCCATTGTGTTCCGGACTCCTCCGTACGCCGACCCCAGCCTCCAGGCTCCTGTTCGAGTCTCCATGCAGCTACGGCGGCCTTCTGATCGCGAGCTCAGTGAGCCCATGGAGTTCCAGTACTTGCCAGACACAg tcagcactgagggttactcttattaacctaattctccattcttactacagatGATGTGGAAGTGTATTTTACAGGACCAGGTTGGGAGGCACAAGGCTCATTTTCTCAAGCTGTTGTACACCGGCAAGTCGCCATTGTGTTCCGGACTCCACCCTATGCAGACCCCAGCCTCCAGGCCCCGGTGAGAGTACCAATGCAATTGCGACGTCATTCAGATCGGAAGCTCAGTGAACCAACTCAGTTCCAATACTTGCCAGATGCAggtgagttagtgaccaatgtggatgtgtgatgagcatggctactgcaatgg Alignment from CESAR aaGACATTGAGGTGTATTTCACGGGACCAGGCTGGGAGGCACGAGGCTCCTTTTCTCAAGCTGATGTGCATCGGCAAGTGGCCATTGTGTTCCGGACTCCTCCGTACGCCGACCCCAGCCTCCAGGCTCCTGTTCGAGTCTCCATGCAGCTACGGCGGCCTTCTGATCGCGAGCTCAGTGAGCCCATGGAGTTCCAGTACTTGCCAGACACAg tcagcactgagggttactcttattaacctaattctccattcttactacagatGATGTGGAAGTGTATTTTACAGGACCAGGTTGGGAGGCACAAGGCTCATTTTCTCAAGCTGTTGTACACCGGCAAGTCGCCATTGTGTTCCGGACTCCACCCTATGCAGACCCCAGCCTCCAGGCCCCGGTGAGAGTACCAATGCAATTGCGACGTCATTCAGATCGGAAGCTCAGTGAACCAACTCAGTTCCAATACTTGCCAGATGCAggtgagttagtgaccaatgtggatgtgtgatgagcatggctactgcaatgg Alignment from Spaln_aa2Genome AAGACATTGAGGTGTATTTCACGGGACCAGGCTGGGAGGCACGAGGCTCCTTTTCTCAAGCTGATGTGCATCGGCAAGTGGCCATTGTGTTCCGGACTCCTCCGTACGCCGACCCCAGCCTCCAGGCTCCTGTTCGAGTCTCCATGCAGCTACGGCGGCCTTCTGATCGCGAGCTCAGTGAGCCCATGGAGTTCCAGTACTTGCCAGACACAG tcagcactgagggttactcttattaacctaattctccattcttactacagATGATGTGGAAGTGTATTTTACAGGACCAGGTTGGGAGGCACAAGGCTCATTTTCTCAAGCTGTTGTACACCGGCAAGTCGCCATTGTGTTCCGGACTCCACCCTATGCAGACCCCAGCCTCCAGGCCCCGGTGAGAGTACCAATGCAATTGCGACGTCATTCAGATCGGAAGCTCAGTGAACCAACTCAGTTCCAATACTTGCCAGATGCAGgtgagttagtgaccaatgtggatgtgtgatgagcatggctactgcaatgg Alignment from Spaln_nt2Genome AAGACATTGAGGTGTATTTCACGGGACCAGGCTGGGAGGCACGAGGCTCCTTTTCTCAAGCTGATGTGCATCGGCAAGTGGCCATTGTGTTCCGGACTCCTCCGTACGCCGACCCCAGCCTCCAGGCTCCTGTTCGAGTCTCCATGCAGCTACGGCGGCCTTCTGATCGCGAGCTCAGTGAGCCCATGGAGTTCCAGTACTTGCCAGACACAG tcagcactgagggttactcttattaacctaattctccattcttactacagATGATGTGGAAGTGTATTTTACAGGACCAGGTTGGGAGGCACAAGGCTCATTTTCTCAAGCTGTTGTACACCGGCAAGTCGCCATTGTGTTCCGGACTCCACCCTATGCAGACCCCAGCCTCCAGGCCCCGGTGAGAGTACCAATGCAATTGCGACGTCATTCAGATCGGAAGCTCAGTGAACCAACTCAGTTCCAATACTTGCCAGATGCAGgtgagttagtgaccaatgtggatgtgtgatgagcatggctactgcaatgg Alignment from Pairagon AAGACATTGAGGTGTATTTCACGGGACCAGGCTGGGAGGCACGAGGCTCCTTTTCTCAAGCTGATGTGCATCGGCAAGTGGCCATTGTGTTCCGGACTCCTCCGTACGCCGACCCCAGCCTCCAGGCTCCTGTTCGAGTCTCCATGCAGCTACGGCGGCCTTCTGATCGCGAGCTCAGTGAGCCCATGGAGTTCCAGTACTTGCCAGACACAG tcagcactgagggttactcttattaacctaattctccattcttactacagATGATGTGGAAGTGTATTTTACAGGACCAGGTTGGGAGGCACAAGGCTCATTTTCTCAAGCTGTTGTACACCGGCAAGTCGCCATTGTGTTCCGGACTCCACCCTATGCAGACCCCAGCCTCCAGGCCCCGGTGAGAGTACCAATGCAATTGCGACGTCATTCAGATCGGAAGCTCAGTGAACCAACTCAGTTCCAATACTTGCCAGATGCAGgtgagttagtgaccaatgtggatgtgtgatgagcatggctactgcaatgg Alignment from Exonerate_protein2genome AAGACATTGAGGTGTATTTCACGGGACCAGGCTGGGAGGCACGAGGCTCCTTTTCTCAAGCTGATGTGCATCGGCAAGTGGCCATTGTGTTCCGGACTCCTCCGTACGCCGACCCCAGCCTCCAGGCTCCTGTTCGAGTCTCCATGCAGCTACGGCGGCCTTCTGATCGCGAGCTCAGTGAGCCCATGGAGTTCCAGTACTTGCCAGACACAG tcagcactgagggttactcttattaacctaattctccattcttactacagATGATGTGGAAGTGTATTTTACAGGACCAGGTTGGGAGGCACAAGGCTCATTTTCTCAAGCTGTTGTACACCGGCAAGTCGCCATTGTGTTCCGGACTCCACCCTATGCAGACCCCAGCCTCCAGGCCCCGGTGAGAGTACCAATGCAATTGCGACGTCATTCAGATCGGAAGCTCAGTGAACCAACTCAGTTCCAATACTTGCCAGATGCAGgtgagttagtgaccaatgtggatgtgtgatgagcatggctactgcaatgg Alignment from Exonerate_coding2genome GAAGACATTGAGGTGTATTTCACGGGACCAGGCTGGGAGGCACGAGGCTCCTTTTCTCAAGCTGATGTGCATCGGCAAGTGGCCATTGTGTTCCGGACTCCTCCGTACGCCGACCCCAGCCTCCAGGCTCCTGTTCGAGTCTCCATGCAGCTACGGCGGCCTTCTGATCGCGAGCTCAGTGAGCCCATGGAGTTCCAGTACTTGCCAGACACAG tcagcactgagggttactcttattaacctaattctccattcttactacaGATGATGTGGAAGTGTATTTTACAGGACCAGGTTGGGAGGCACAAGGCTCATTTTCTCAAGCTGTTGTACACCGGCAAGTCGCCATTGTGTTCCGGACTCCACCCTATGCAGACCCCAGCCTCCAGGCCCCGGTGAGAGTACCAATGCAATTGCGACGTCATTCAGATCGGAAGCTCAGTGAACCAACTCAGTTCCAATACTTGCCAGATGCAGgtgagttagtgaccaatgtggatgtgtgatgagcatggctactgcaatgg Alignment from GeneWise AAGACATTGAGGTGTATTTCACGGGACCAGGCTGGGAGGCACGAGGCTCCTTTTCTCAAGCTGATGTGCATCGGCAAGTGGCCATTGTGTTCCGGACTCCTCCGTACGCCGACCCCAGCCTCCAGGCTCCTGTTCGAGTCTCCATGCAGCTACGGCGGCCTTCTGATCGCGAGCTCAGTGAGCCCATGGAGTTCCAGTACTTGCCAGACACAG tcagcactgagggttactcttattaacctaattctccattcttactacagATGATGTGGAAGTGTATTTTACAGGACCAGGTTGGGAGGCACAAGGCTCATTTTCTCAAGCTGTTGTACACCGGCAAGTCGCCATTGTGTTCCGGACTCCACCCTATGCAGACCCCAGCCTCCAGGCCCCGGTGAGAGTACCAATGCAATTGCGACGTCATTCAGATCGGAAGCTCAGTGAACCAACTCAGTTCCAATACTTGCCAGATGCAGgtgagttagtgaccaatgtggatgtgtgatgagcatggctactgcaatgg #### Rela_ID1133_10 --> 2 - 1 Original Alignment gaCCAACTGAACCCCGGCCTCCAACCCGGCGTATTGCTGTGCCTACCCGAAACTCAACTTCTGTCCCCAAGCCAg gcaggactggatcctagggcccagaggcttttattttattttccttgtaggaCCAACTGAACCCCAGCCTCCAACCCGGCGTGTTGCTGTTCCAACCCGAAACTCATCTTCTGTACCCAAGCCAggtaagtaaagtcactactattctttattgatggtaaaggtcccatctcaa Alignment from CESAR gaCCAACTGAACCCCGGCCTCCAACCCGGCGTATTGCTGTGCCTACCCGAAACTCAACTTCTGTCCCCAAGCCAg gcaggactggatcctagggcccagaggcttttattttattttccttgtaggaCCAACTGAACCCCAGCCTCCAACCCGGCGTGTTGCTGTTCCAACCCGAAACTCATCTTCTGTACCCAAGCCAggtaagtaaagtcactactattctttattgatggtaaaggtcccatctcaa Alignment from Spaln_aa2Genome GACCAACTGAACCCCGGCCTCCAACCCGGCGTATTGCTGTGCCTACCCGAAACTCAACTTCTGTCCCCAAGCCAG gcaggactggatcctagggcccagaggcttttattttattttccttgtagGACCAACTGAACCCCAGCCTCCAACCCGGCGTGTTGCTGTTCCAACCCGAAACTCATCTTCTGTACCCAAGCCAGgtaagtaaagtcactactattctttattgatggtaaaggtcccatctcaa Alignment from Spaln_nt2Genome GACCAACTGAACCCCGGCCTCCAACCCGGCGTATTGCTGTGCCTACCCGAAACTCAACTTCTGTCCCCAAGCCAG CCCCGCAGCCCT gcaggactggatcctagggcccagaggcttttattttattttccttgtagGACCAACTGAACCCCAGCCTCCAACCCGGCGTGTTGCTGTTCCAACCCGAAACTCATCTTCTGTACCCAAGCCAGgtaagtaaagtcactactattctttattgatggtaaagGTCC-CATCTCA Alignment from Pairagon GACCAACTGAACCCCGGCCTCCAACCCGGCGTATTGCTGTGCCTACCCGAAACTCAACTTCTGTCCCCAAGCCAG gcaggactggatcctagggcccagaggcttttattttattttccttgtagGACCAACTGAACCCCAGCCTCCAACCCGGCGTGTTGCTGTTCCAACCCGAAACTCATCTTCTGTACCCAAGCCAGgtaagtaaagtcactactattctttattgatggtaaaggtcccatctcaa Alignment from Exonerate_protein2genome GACCAACTGAACCCCGGCCTCCAACCCGGCGTATTGCTGTGCCTACCCGAAACTCAACTTCTGTCCCCAAGCCAG gcaggactggatcctagggcccagaggcttttattttattttccttgtagGACCAACTGAACCCCAGCCTCCAACCCGGCGTGTTGCTGTTCCAACCCGAAACTCATCTTCTGTACCCAAGCCAGgtaagtaaagtcactactattctttattgatggtaaaggtcccatctcaa Alignment from Exonerate_coding2genome GACCAACTGAACCCCGGCCTCCAACCCGGCGTATTGCTGTGCCTACCCGAAACTCAACTTCTGTCCCCAAGCCAG gcaggactggatcctagggcccagaggcttttattttattttccttgtagGACCAACTGAACCCCAGCCTCCAACCCGGCGTGTTGCTGTTCCAACCCGAAACTCATCTTCTGTACCCAAGCCAGgtaagtaaagtcactactattctttattgatggtaaaggtcccatctcaa Alignment from GeneWise GACCAACTGAACCCCGGCCTCCAACCCGGCGTATTGCTGTGCCTACCCGAAACTCAACTTCTGTCCCCAAGCCAGCCCCGC gcaggactggatcctagggcccagaggcttttattttattttccttgtagGACCAACTGAACCCCAGCCTCCAACCCGGCGTGTTGCTGTTCCAACCCGAAACTCATCTTCTGTACCCAAG------CCAGgtaagtaaagtcactactattctttattgatggtaaaggtcccatctcaa #### Rfk_ID4225_3 --> 0 - 1 Original Alignment GAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCCATTGTTGGCTATCTCAGACCTGAAAAGAACTTTGATTCTTTAg aaaaatctcacccaggtcacctgaatgttaagtttttttcttttttgaagGAAACACACATCATCCATACCTTCAAGGAGGATTTTTATGGGGAGATTCTCAATGTGGCTATCGTTGGATATTTGAAACCGGAAAAGAACTTTGATTCTTTAggtaaacgttatatattaaatgggcattatgagagcacttgaaacagtgga Alignment from CESAR GAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCCATTGTTGGCTATCTCAGACCTGAAAAGAACTTTGATTCTTTAg aaaaatctcacccaggtcacctgaatgttaagtttttttcttttttgaagGAAACACACATCATCCATACCTTCAAGGAGGATTTTTATGGGGAGATTCTCAATGTGGCTATCGTTGGATATTTGAAACCGGAAAAGAACTTTGATTCTTTAggtaaacgttatatattaaatgggcattatgagagcacttgaaacagtgga Alignment from Spaln_aa2Genome GAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCCATTGTTGGCTATCTCAGACCTGAAAAGAACTTTGATTCTTTAG aaaaatctcacccaggtcacctgaatgttaagtttttttcttttttgaagGAAACACACATCATCCATACCTTCAAGGAGGATTTTTATGGGGAGATTCTCAATGTGGCTATCGTTGGATATTTGAAACCGGAAAAGAACTTTGATTCTTTAGgtaaacgttatatattaaatgggcattatgagagcacttgaaacagtgga Alignment from Spaln_nt2Genome GAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCCATTGTTGGCTATCTCAGACCTGAAAAGAACTTTGATTCTTTAG aaaaatctcacccaggtcacctgaatgttaagtttttttcttttttgaagGAAACACACATCATCCATACCTTCAAGGAGGATTTTTATGGGGAGATTCTCAATGTGGCTATCGTTGGATATTTGAAACCGGAAAAGAACTTTGATTCTTTAGgtaaacgttatatattaaatgggcattatgagagcacttgaaacagtgga Alignment from Pairagon GAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCCATTGTTGGCTATCTCAGACCTGAAAAGAACTTTGATTCTTTAG aaaaatctcacccaggtcacctgaatgttaagtttttttcttttttgaagGAAACACACATCATCCATACCTTCAAGGAGGATTTTTATGGGGAGATTCTCAATGTGGCTATCGTTGGATATTTGAAACCGGAAAAGAACTTTGATTCTTTAGgtaaacgttatatattaaatgggcattatgagagcacttgaaacagtgga Alignment from Exonerate_protein2genome GAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCCATTGTTGGCTATCTCAGACCTGAAAAGAACTTTGATTCTTTAG aaaaatctcacccaggtcacctgaatgttaagtttttttcttttttgaagGAAACACACATCATCCATACCTTCAAGGAGGATTTTTATGGGGAGATTCTCAATGTGGCTATCGTTGGATATTTGAAACCGGAAAAGAACTTTGATTCTTTAGgtaaacgttatatattaaatgggcattatgagagcacttgaaacagtgga Alignment from Exonerate_coding2genome GAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCCATTGTTGGCTATCTCAGACCTGAAAAGAACTTTGATTCTTTAG aaaaatctcacccaggtcacctgaatgttaagtttttttcttttttgaagGAAACACACATCATCCATACCTTCAAGGAGGATTTTTATGGGGAGATTCTCAATGTGGCTATCGTTGGATATTTGAAACCGGAAAAGAACTTTGATTCTTTAGgtaaacgttatatattaaatgggcattatgagagcacttgaaacagtgga Alignment from GeneWise GAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCCATTGTTGGCTATCTCAGACCTGAAAAGAACTTTGATTCTTTAG aaaaatctcacccaggtcacctgaatgttaagtttttttcttttttgaagGAAACACACATCATCCATACCTTCAAGGAGGATTTTTATGGGGAGATTCTCAATGTGGCTATCGTTGGATATTTGAAACCGGAAAAGAACTTTGATTCTTTAGgtaaacgttatatattaaatgggcattatgagagcacttgaaacagtgga #### Rfx3_ID5904_3 --> 1 - 0 Original Alignment cCGAACAACAACTTATCCCTACACAGAAACACAGATGTACAGCCAAAACACTGGAGGAAATTACTTTGATACTCAAGGAAGTTCTGCCCAGGTGACAACTGTGGTGTCCTCCCACAGTATGGTGGGTACTGGTGGGATTCAGATGGGCGTCACAGGAGGACAACTCATCAGCAGCTCGGGAGGAACCTATTTGATCGGCAATTCAATGGAGAACTCTGGTCACTCAGTGACACACACAACTCGGGCCTCCCCAGCAACA tttgaagtcaagaatgggttaatggattttactgacttgcccccttgtagcCGAACAACAACTTACCCCTACACAGAAACACAGATGTACAGCCAAAACACTGGAGGAAATTACTTTGAAACTCAAGGGACTTCTGCCCAGGTGACTACTGTGGTGTCTTCTCACAGTATGGTGGGTACTGGTGGGATTCAGATGGGGGTAACAGGAGGACAACTCATCAGCAGCTCAGGTGGGACCTATTTGATTGGCAACTCAATGGAGAACTTTGGTCATTCAGTGACACGTACAACTCGGGCCTCCCCAGCAACAgtgaggattacaggctttattcaccatagtgggtgcttctctcttctaca Alignment from CESAR cCGAACAACAACTTATCCCTACACAGAAACACAGATGTACAGCCAAAACACTGGAGGAAATTACTTTGATACTCAAGGAAGTTCTGCCCAGGTGACAACTGTGGTGTCCTCCCACAGTATGGTGGGTACTGGTGGGATTCAGATGGGCGTCACAGGAGGACAACTCATCAGCAGCTCGGGAGGAACCTATTTGATCGGCAATTCAATGGAGAACTCTGGTCACTCAGTGACACACACAACTCGGGCCTCCCCAGCAACA tttgaagtcaagaatgggttaatggattttactgacttgcccccttgtagcCGAACAACAACTTACCCCTACACAGAAACACAGATGTACAGCCAAAACACTGGAGGAAATTACTTTGAAACTCAAGGGACTTCTGCCCAGGTGACTACTGTGGTGTCTTCTCACAGTATGGTGGGTACTGGTGGGATTCAGATGGGGGTAACAGGAGGACAACTCATCAGCAGCTCAGGTGGGACCTATTTGATTGGCAACTCAATGGAGAACTTTGGTCATTCAGTGACACGTACAACTCGGGCCTCCCCAGCAACAgtgaggattacaggctttattcaccatagtgggtgcttctctcttctaca Alignment from Spaln_aa2Genome CCGAACAACAACTTATCCCTACACAGAAACACAGATGTACAGCCAAAACACTGGAGGAAATTACTTTGATACTCAAGGAAGTTCTGCCCAGGTGACAACTGTGGTGTCCTCCCACAGTATGGTGGGTACTGGTGGGATTCAGATGGGCGTCACAGGAGGACAACTCATCAGCAGCTCGGGAGGAACCTATTTGATCGGCAATTCAATGGAGAACTCTGGTCACTCAGTGACACACACAACTCGGGCCTCCCCAGCAACA tttgaagtcaagaatgggttaatggattttactgacttgcccccttgtagCCGAACAACAACTTACCCCTACACAGAAACACAGATGTACAGCCAAAACACTGGAGGAAATTACTTTGAAACTCAAGGGACTTCTGCCCAGGTGACTACTGTGGTGTCTTCTCACAGTATGGTGGGTACTGGTGGGATTCAGATGGGGGTAACAGGAGGACAACTCATCAGCAGCTCAGGTGGGACCTATTTGATTGGCAACTCAATGGAGAACTTTGGTCATTCAGTGACACGTACAACTCGGGCCTCCCCAGCAACAgtgaggattacaggctttattcaccatagtgggtgcttctctcttctaca Alignment from Spaln_nt2Genome CCGAACAACAACTTATCCCTACACAGAAACACAGATGTACAGCCAAAACACTGGAGGAAATTACTTTGATACTCAAGGAAGTTCTGCCCAGGTGACAACTGTGGTGTCCTCCCACAGTATGGTGGGTACTGGTGGGATTCAGATGGGCGTCACAGGAGGACAACTCATCAGCAGCTCGGGAGGAACCTATTTGATCGGCAATTCAATGGAGAACTCTGGTCACTCAGTGACACACACAACTCGGGCCTCCCCAGCAACA tttgaagtcaagaatgggttaatggattttactgacttgcccccttgtagCCGAACAACAACTTACCCCTACACAGAAACACAGATGTACAGCCAAAACACTGGAGGAAATTACTTTGAAACTCAAGGGACTTCTGCCCAGGTGACTACTGTGGTGTCTTCTCACAGTATGGTGGGTACTGGTGGGATTCAGATGGGGGTAACAGGAGGACAACTCATCAGCAGCTCAGGTGGGACCTATTTGATTGGCAACTCAATGGAGAACTTTGGTCATTCAGTGACACGTACAACTCGGGCCTCCCCAGCAACAgtgaggattacaggctttattcaccatagtgggtgcttctctcttctaca Alignment from Pairagon CCGAACAACAACTTATCCCTACACAGAAACACAGATGTACAGCCAAAACACTGGAGGAAATTACTTTGATACTCAAGGAAGTTCTGCCCAGGTGACAACTGTGGTGTCCTCCCACAGTATGGTGGGTACTGGTGGGATTCAGATGGGCGTCACAGGAGGACAACTCATCAGCAGCTCGGGAGGAACCTATTTGATCGGCAATTCAATGGAGAACTCTGGTCACTCAGTGACACACACAACTCGGGCCTCCCCAGCAACA tttgaagtcaagaatgggttaatggattttactgacttgcccccttgtagCCGAACAACAACTTACCCCTACACAGAAACACAGATGTACAGCCAAAACACTGGAGGAAATTACTTTGAAACTCAAGGGACTTCTGCCCAGGTGACTACTGTGGTGTCTTCTCACAGTATGGTGGGTACTGGTGGGATTCAGATGGGGGTAACAGGAGGACAACTCATCAGCAGCTCAGGTGGGACCTATTTGATTGGCAACTCAATGGAGAACTTTGGTCATTCAGTGACACGTACAACTCGGGCCTCCCCAGCAACAgtgaggattacaggctttattcaccatagtgggtgcttctctcttctaca Alignment from Exonerate_protein2genome CCGAACAACAACTTATCCCTACACAGAAACACAGATGTACAGCCAAAACACTGGAGGAAATTACTTTGATACTCAAGGAAGTTCTGCCCAGGTGACAACTGTGGTGTCCTCCCACAGTATGGTGGGTACTGGTGGGATTCAGATGGGCGTCACAGGAGGACAACTCATCAGCAGCTCGGGAGGAACCTATTTGATCGGCAATTCAATGGAGAACTCTGGTCACTCAGTGACACACACAACTCGGGCCTCCCCAGCAACA tttgaagtcaagaatgggttaatggattttactgacttgcccccttgtagCCGAACAACAACTTACCCCTACACAGAAACACAGATGTACAGCCAAAACACTGGAGGAAATTACTTTGAAACTCAAGGGACTTCTGCCCAGGTGACTACTGTGGTGTCTTCTCACAGTATGGTGGGTACTGGTGGGATTCAGATGGGGGTAACAGGAGGACAACTCATCAGCAGCTCAGGTGGGACCTATTTGATTGGCAACTCAATGGAGAACTTTGGTCATTCAGTGACACGTACAACTCGGGCCTCCCCAGCAACAgtgaggattacaggctttattcaccatagtgggtgcttctctcttctaca Alignment from Exonerate_coding2genome CCGAACAACAACTTATCCCTACACAGAAACACAGATGTACAGCCAAAACACTGGAGGAAATTACTTTGATACTCAAGGAAGTTCTGCCCAGGTGACAACTGTGGTGTCCTCCCACAGTATGGTGGGTACTGGTGGGATTCAGATGGGCGTCACAGGAGGACAACTCATCAGCAGCTCGGGAGGAACCTATTTGATCGGCAATTCAATGGAGAACTCTGGTCACTCAGTGACACACACAACTCGGGCCTCCCCAGCAACA tttgaagtcaagaatgggttaatggattttactgacttgcccccttgtagCCGAACAACAACTTACCCCTACACAGAAACACAGATGTACAGCCAAAACACTGGAGGAAATTACTTTGAAACTCAAGGGACTTCTGCCCAGGTGACTACTGTGGTGTCTTCTCACAGTATGGTGGGTACTGGTGGGATTCAGATGGGGGTAACAGGAGGACAACTCATCAGCAGCTCAGGTGGGACCTATTTGATTGGCAACTCAATGGAGAACTTTGGTCATTCAGTGACACGTACAACTCGGGCCTCCCCAGCAACAgtgaggattacaggctttattcaccatagtgggtgcttctctcttctaca Alignment from GeneWise CCGAACAACAACTTATCCCTACACAGAAACACAGATGTACAGCCAAAACACTGGAGGAAATTACTTTGATACTCAAGGAAGTTCTGCCCAGGTGACAACTGTGGTGTCCTCCCACAGTATGGTGGGTACTGGTGGGATTCAGATGGGCGTCACAGGAGGACAACTCATCAGCAGCTCGGGAGGAACCTATTTGATCGGCAATTCAATGGAGAACTCTGGTCACTCAGTGACACACACAACTCGGGCCTCCCCAGCAACA tttgaagtcaagaatgggttaatggattttactgacttgcccccttgtagCCGAACAACAACTTACCCCTACACAGAAACACAGATGTACAGCCAAAACACTGGAGGAAATTACTTTGAAACTCAAGGGACTTCTGCCCAGGTGACTACTGTGGTGTCTTCTCACAGTATGGTGGGTACTGGTGGGATTCAGATGGGGGTAACAGGAGGACAACTCATCAGCAGCTCAGGTGGGACCTATTTGATTGGCAACTCAATGGAGAACTTTGGTCATTCAGTGACACGTACAACTCGGGCCTCCCCAGCAACAgtgaggattacaggctttattcaccatagtgggtgcttctctcttctaca #### Rhod_ID529_2 --> 0 - 1 Original Alignment AGCTACAGTCCCACAGTGTTTGAGCGCTATAATGCCACTCTGCAGATGAAGGGTAAACCTGTGCACCTCCAAATCTGGGACACAGCCg tgttcagtatactgcttaagagtcttcaacccattgtccctttccctcagAGTTACAGTCCTACAGTATTTGAGCGTTATAATGCCACGCTGCAGATGAAGGGTAAACCTGTGCACCTCCAAATCTGGGACGCAGCTggtaagcaggcgtttgttagcatgagccagtcccttctaataattcctaaa Alignment from CESAR AGCTACAGTCCCACAGTGTTTGAGCGCTATAATGCCACTCTGCAGATGAAGGGTAAACCTGTGCACCTCCAAATCTGGGACACAGCCg tgttcagtatactgcttaagagtcttcaacccattgtccctttccctcagAGTTACAGTCCTACAGTATTTGAGCGTTATAATGCCACGCTGCAGATGAAGGGTAAACCTGTGCACCTCCAAATCTGGGACGCAGCTggtaagcaggcgtttgttagcatgagccagtcccttctaataattcctaaa Alignment from Spaln_aa2Genome AGCTACAGTCCCACAGTGTTTGAGCGCTATAATGCCACTCTGCAGATGAAGGGTAAACCTGTGCACCTCCAAATCTGGGACACAGCCG tgttcagtatactgcttaagagtcttcaacccattgtccctttccctcagAGTTACAGTCCTACAGTATTTGAGCGTTATAATGCCACGCTGCAGATGAAGGGTAAACCTGTGCACCTCCAAATCTGGGACGCAGCTGgtaagcaggcgtttgttagcatgagccagtcccttctaataattcctaaa Alignment from Spaln_nt2Genome AGCTACAGTCCCACAGTGTTTGAGCGCTATAATGCCACTCTGCAGATGAAGGGTAAACCTGTGCACCTCCAAATCTGGGACACAGCCG tgttcagtatactgcttaagagtcttcaacccattgtccctttccctcagAGTTACAGTCCTACAGTATTTGAGCGTTATAATGCCACGCTGCAGATGAAGGGTAAACCTGTGCACCTCCAAATCTGGGACGCAGCTGgtaagcaggcgtttgttagcatgagccagtcccttctaataattcctaaa Alignment from Pairagon AGCTACAGTCCCACAGTGTTTGAGCGCTATAATGCCACTCTGCAGATGAAGGGTAAACCTGTGCACCTCCAAATCTGGGACACAGCCG tgttcagtatactgcttaagagtcttcaacccattgtccctttccctcagAGTTACAGTCCTACAGTATTTGAGCGTTATAATGCCACGCTGCAGATGAAGGGTAAACCTGTGCACCTCCAAATCTGGGACGCAGCTGgtaagcaggcgtttgttagcatgagccagtcccttctaataattcctaaa Alignment from Exonerate_protein2genome AGCTACAGTCCCACAGTGTTTGAGCGCTATAATGCCACTCTGCAGATGAAGGGTAAACCTGTGCACCTCCAAATCTGGGACACAGCCG tgttcagtatactgcttaagagtcttcaacccattgtccctttccctcagAGTTACAGTCCTACAGTATTTGAGCGTTATAATGCCACGCTGCAGATGAAGGGTAAACCTGTGCACCTCCAAATCTGGGACGCAGCTGgtaagcaggcgtttgttagcatgagccagtcccttctaataattcctaaa Alignment from Exonerate_coding2genome AGCTACAGTCCCACAGTGTTTGAGCGCTATAATGCCACTCTGCAGATGAAGGGTAAACCTGTGCACCTCCAAATCTGGGACACAGCCG tgttcagtatactgcttaagagtcttcaacccattgtccctttccctcagAGTTACAGTCCTACAGTATTTGAGCGTTATAATGCCACGCTGCAGATGAAGGGTAAACCTGTGCACCTCCAAATCTGGGACGCAGCTGgtaagcaggcgtttgttagcatgagccagtcccttctaataattcctaaa Alignment from GeneWise AGCTACAGTCCCACAGTGTTTGAGCGCTATAATGCCACTCTGCAGATGAAGGGTAAACCTGTGCACCTCCAAATCTGGGACACAGCCG tgttcagtatactgcttaagagtcttcaacccattgtccctttccctcagAGTTACAGTCCTACAGTATTTGAGCGTTATAATGCCACGCTGCAGATGAAGGGTAAACCTGTGCACCTCCAAATCTGGGACGCAGCTGgtaagcaggcgtttgttagcatgagccagtcccttctaataattcctaaa #### Rin1_ID813_8 --> 2 - 1 Original Alignment gaGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTC---ACTGGAGAGg tgactctaaattccaaacctcaagtacacttgcttttttaaacatttcaggaGAAAATACAGGTGCTGATCAGTTCCTCCCCCTGCTAAGTCTTATTTTGGCACAGTGTGACCTGCCAGACCTCTTATTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTCTACTCACCGCAGGTGAGggtaccgatcactcttatatagtatgacctggtacttgttagtaggtcctt Alignment from CESAR gaGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGg tgactctaaattccaaacctcaagtacacttgcttttttaaacatttcaggaGAAAATACAGGTGCTGATCAGTTCCTCCCCCTGCTAAGTCTTATTTTGGCACAGTGTGACCTGCCAGACCTCTTATTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTCTACTCACCGCAGGTGAGggtaccgatcactcttatatagtatgacctggtacttgttagtaggtcctt Alignment from Spaln_aa2Genome GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGG tgactctaaattccaaacctcaagtacacttgcttttttaaacatttcagGAGAAAATACAGGTGCTGATCAGTTCCTCCCCCTGCTAAGTCTTATTTTGGCACAGTGTGACCTGCCAGACCTCTTATTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTCTACTCACCGCAGGTGAGGgtaccgatcactcttatatagtatgacctggtacttgttagtaggtcctt Alignment from Spaln_nt2Genome GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACTGGAG---AGG tgactctaaattccaaacctcaagtacacttgcttttttaaacatttcagGAGAAAATACAGGTGCTGATCAGTTCCTCCCCCTGCTAAGTCTTATTTTGGCACAGTGTGACCTGCCAGACCTCTTATTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTCTACTCACCGCAGGTGAGGgtaccgatcactcttatatagtatgacctggtacttgttagtaggtcctt Alignment from Pairagon GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACTGGAG tgactctaaattccaaacctcaagtacacttgcttttttaaacatttcagGAGAAAATACAGGTGCTGATCAGTTCCTCCCCCTGCTAAGTCTTATTTTGGCACAGTGTGACCTGCCAGACCTCTTATTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTCTACTCACCGCAGgtgagggtaccgatcactcttatatagtatgacctggtacttgttagtaggtcctt Alignment from Exonerate_protein2genome GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACTGGAGAGG tgactctaaattccaaacctcaagtacacttgcttttttaaacatttcagGAGAAAATACAGGTGCTGATCAGTTCCTCCCCCTGCTAAGTCTTATTTTGGCACAGTGTGACCTGCCAGACCTCTTATTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTCTACTCACCGCA---Ggtgagggtaccgatcactcttatatagtatgacctggtacttgttagtaggtcctt Alignment from Exonerate_coding2genome GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACTGGAGAGG tgactctaaattccaaacctcaagtacacttgcttttttaaacatttcagGAGAAAATACAGGTGCTGATCAGTTCCTCCCCCTGCTAAGTCTTATTTTGGCACAGTGTGACCTGCCAGACCTCTTATTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTCTACTCACCGCA---Ggtgagggtaccgatcactcttatatagtatgacctggtacttgttagtaggtcctt Alignment from GeneWise GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGG tgactctaaattccaaacctcaagtacacttgcttttttaaacatttcagGAGAAAATACAGGTGCTGATCAGTTCCTCCCCCTGCTAAGTCTTATTTTGGCACAGTGTGACCTGCCAGACCTCTTATTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACTCTACTCACCGCAGGTGAGGgtaccgatcactcttatatagtatgacctggtacttgttagtaggtcctt #### Rin1_ID814_9 --> 2 - 0 Original Alignment gtGGCTACTACCTGACCAGCCTCTCAGCCAGCCTGGCCTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAG aaaacaatggtaatccctggtaaaccagtaaacttctcttcccctttcagggGGCTACTATATAACCAGCCTTTCAGCCAGACTTGCCTTGCTGAGTGGTCTAAGGCAGGCTCGAGCACTGCCTCTCAGCCCTGCACAAAAGCTCCAACCCTCCCTTGCCCTTTGGGAGCAACGGCAC---CTA---ACCCCCAGCTTTAAAgtaaatgctgcttccccaggtacccccacttactctccagtacaggttcg Alignment from CESAR gtGGCTACTACCTGACCAGCCTCTCAGCCAGCCTGGCCTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAG aaaacaatggtaatccctggtaaaccagtaaacttctcttcccctttcagggGGCTACTATATAACCAGCCTTTCAGCCAGACTTGCCTTGCTGAGTGGTCTAAGGCAGGCTCGAGCACTGCCTCTCAGCCCTGCACAAAAGCTCCAACCCTCCCTTGCCCTTTGGGAGCAACGGCACCTA------ACCCCCAGCTTTAAAgtaaatgctgcttccccaggtacccccacttactctccagtacaggttcg Alignment from Spaln_aa2Genome GTGGCTACTACCTGACCAGCCTCTCAGCCAGCCTGGCCTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAG aaaacaatggtaatccctggtaaaccagtaaacttctcttcccctttcagGGGGCTACTATATAACCAGCCTTTCAGCCAGACTTGCCTTGCTGAGTGGTCTAAGGCAGGCTCGAGCACTGCCTCTCAGCCCTGCACAAAAGCTCCAACCCTCCCTTGCCCTTTGGGAGCAACGGCACCTA------ACCCCCAGCTTTAAAgtaaatgctgcttccccaggtacccccacttactctccagtacaggttcg Alignment from Spaln_nt2Genome GTGGCTACTACCTGACCAGCCTCTCAGCCAGCCTGGCCTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAG aaaacaatggtaatccctggtaaaccagtaaacttctcttcccctttcagGGGGCTACTATATAACCAGCCTTTCAGCCAGACTTGCCTTGCTGAGTGGTCTAAGGCAGGCTCGAGCACTGCCTCTCAGCCCTGCACAAAAGCTCCAACCCTCCCTTGCCCTTTGGGAGCAACGGCACCT------AACCCCCAGCTTTAAAgtaaatgctgcttccccaggtacccccacttactctccagtacaggttcg Alignment from Pairagon GTGGCTACTACCTGACCAGCCTCTCAGCCAGCCTGGCCTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAG aaaacaatggtaatccctggtaaaccagtaaacttctcttcccctttcagGGGGCTACTATATAACCAGCCTTTCAGCCAGACTTGCCTTGCTGAGTGGTCTAAGGCAGGCTCGAGCACTGCCTCTCAGCCCTGCACAAAAGCTCCAACCCTCCCTTGCCCTTTGGGAGCAACGGCACCTA------ACCCCCAGCTTTAAAgtaaatgctgcttccccaggtacccccacttactctccagtacaggttcg Alignment from Exonerate_protein2genome GTGGCTACTACCTGACCAGCCTCTCAGCCAGCCTGGCCTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAG aaaacaatggtaatccctggtaaaccagtaaacttctcttcccctttcagGGGGCTACTATATAACCAGCCTTTCAGCCAGACTTGCCTTGCTGAGTGGTCTAAGGCAGGCTCGAGCACTGCCTCTCAGCCCTGCACAAAAGCTCCAACCCTCCCTTGCCCTTTGGGAGCAACGGCACCTA------ACCCCCAGCTTTAAAgtaaatgctgcttccccaggtacccccacttactctccagtacaggttcg Alignment from Exonerate_coding2genome GTGGCTACTACCTGACCAGCCTCTCAGCCAGCCTGGCCTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAG aaaacaatggtaatccctggtaaaccagtaaacttctcttcccctttcagGGGGCTACTATATAACCAGCCTTTCAGCCAGACTTGCCTTGCTGAGTGGTCTAAGGCAGGCTCGAGCACTGCCTCTCAGCCCTGCACAAAAGCTCCAACCCTCCCTTGCCCTTTGGGAGCAACGGCACCTA------ACCCCCAGCTTTAAAgtaaatgctgcttccccaggtacccccacttactctccagtacaggttcg Alignment from GeneWise GTGGCTACTACCTGACCAGCCTCTCAGCCAGCCTGGCCTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAG aaaacaatggtaatccctggtaaaccagtaaacttctcttcccctttcagGGGGCTACTATATAACCAGCCTTTCAGCCAGACTTGCCTTGCTGAGTGGTCTAAGGCAGGCTCGAGCACTGCCTCTCAGCCCTGCACAAAAGCTCCAACCCTCCCTTGCCCTTTGGGAGCAACGGCACCTA------ACCCCCAGCTTTAAAgtaaatgctgcttccccaggtacccccacttactctccagtacaggttcg #### Rnaseh2c_ID1104_3 --> 0 - 0 Original Alignment GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG gcacaagtgtatccaactaatgtacaaacccaggttattcttgttttcagGACCGCCTTATCGGGGCCACTGGGAGCTTCAGCCATTTCACCTTGTGGGATCTGGAAACAGTCCCAGGTCCAGATGCCATAGTGCATAGGGCCCTAGGATGGCCCACCCTCGCAGCAGCAgtaagaagactgaagaaacttacctccaaggactgacaattcctttatct Alignment from CESAR GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG gcacaagtgtatccaactaatgtacaaacccaggttattcttgttttcagGACCGCCTTATCGGGGCCACTGGGAGCTTCAGCCATTTCACCTTGTGGGATCTGGAAACAGTCCCAGGTCCAGATGCCATAGTGCATAGGGCCCTAGGATGGCCCACCCTCGCAGCAGCAgtaagaagactgaagaaacttacctccaaggactgacaattcctttatct Alignment from Spaln_aa2Genome GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG gcacaagtgtatccaactaatgtacaaacccaggttattcttgttttcagGACCGCCTTATCGGGGCCACTGGGAGCTTCAGCCATTTCACCTTGTGGGATCTGGAAACAGTCCCAGGTCCAGATGCCATAGTGCATAGGGCCCTAGGATGGCCCACCCTCGCAGCAGCAgtaagaagactgaagaaacttacctccaaggactgacaattcctttatct Alignment from Spaln_nt2Genome GACTTCGACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG gcacaagtgtatccaactaatgtacaaacccaggttattcttgttttcag------GACCGCCTTATCGGGGCCACTGGGAGCTTCAGCCATTTCACCTTGTGGGATCTGGAAACAGTCCCAGGTCCAGATGCCATAGTGCATAGGGCCCTAGGATGGCCCACCCTCGCAGCAGCAgtaagaagactgaagaaacttacctccaaggactgacaattcctttatct Alignment from Pairagon GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG gcacaagtgtatccaactaatgtacaaacccaggttattcttgttttcagGACCGCCTTATCGGGGCCACTGGGAGCTTCAGCCATTTCACCTTGTGGGATCTGGAAACAGTCCCAGGTCCAGATGCCATAGTGCATAGGGCCCTAGGATGGCCCACCCTCGCAGCAGCAgtaagaagactgaagaaacttacctccaaggactgacaattcctttatct Alignment from Exonerate_protein2genome gcacaagtgtatccaactaatgtacaaacccaggttattcttgttttcaggaccgccttatcggggccactgggagcttcagccatttcaccttgtgggatctggaaacagtcccaggtccagatgccatagtgcatagggccctaggatggcccaccctcgcagcagcagtaagaagactgaagaaacttacctccaaggactgacaattcctttatct Alignment from Exonerate_coding2genome GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCGATT gcacaagtgtatccaactaatgtacaaacccaggttattcttgttttcagGACCGCCTTATCGGGGCCACTGGGAGCTTCAGCCATTTCACCTTGTGGGATCTGGAAACAGTCCCAGGTCCAGATGCCATAGTGCATAGGGCCCTAGGATGGCCCACCCTCGCAGCAGCAGTAagaagactgaagaaacttacctccaaggactgacaattcctttatct Alignment from GeneWise GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCGATTCACGCCCAGGTCCCTGAGGAC gcacaagtgtatccaactaatgtacaaacccaggttattcttgttttcagGACCGCCTTATCGGGGCCACTGGGAGCTTCAGCCATTTCACCTTGTGGGATCTGGAAACAGTCCCAGGTCCAGATGCCATAGTGCATAGGGCCCTAGGATGGCCCACCCTCGCAGCAGCAGTAAGAAGACTGAAGAAACTTACCtccaaggactgacaattcctttatct #### Rnls_ID6799_4 --> 2 - 1 Original Alignment taATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGAGCTACTCCTCTCGCTATGCTCTGGGCCTCTTTTATGAAGTAGGCATGAAGATTGGTGTCCCTTGGTCCTGCCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAGAAGCGCAATATAg ttctcctacccttaaacaaattcagcataatgttttgaaaacccttaaagtaATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGACCTACTCCTCTCGCTATGCTTTAGGCCTCTTTTATGAAGTAGGCATGAAGAATGGTGTCCCTTGGTCATGTCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAGAAGCGCAATATAggtgagtctcccacaattacaaaaaacataggttgagaaaactggtgtttg Alignment from CESAR taATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGAGCTACTCCTCTCGCTATGCTCTGGGCCTCTTTTATGAAGTAGGCATGAAGATTGGTGTCCCTTGGTCCTGCCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAGAAGCGCAATATAg ttctcctacccttaaacaaattcagcataatgttttgaaaacccttaaagtaATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGACCTACTCCTCTCGCTATGCTTTAGGCCTCTTTTATGAAGTAGGCATGAAGAATGGTGTCCCTTGGTCATGTCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAGAAGCGCAATATAggtgagtctcccacaattacaaaaaacataggttgagaaaactggtgtttg Alignment from Spaln_aa2Genome TAATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGAGCTACTCCTCTCGCTATGCTCTGGGCCTCTTTTATGAAGTAGGCATGAAGATTGGTGTCCCTTGGTCCTGCCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAGAAGCGCAATATAG ttctcctacccttaaacaaattcagcataatgttttgaaaacccttaaagTAATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGACCTACTCCTCTCGCTATGCTTTAGGCCTCTTTTATGAAGTAGGCATGAAGAATGGTGTCCCTTGGTCATGTCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAGAAGCGCAATATAGgtgagtctcccacaattacaaaaaacataggttgagaaaactggtgtttg Alignment from Spaln_nt2Genome TAATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGAGCTACTCCTCTCGCTATGCTCTGGGCCTCTTTTATGAAGTAGGCATGAAGATTGGTGTCCCTTGGTCCTGCCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAGAAGCGCAATATAG ttctcctacccttaaacaaattcagcataatgttttgaaaacccttaaagTAATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGACCTACTCCTCTCGCTATGCTTTAGGCCTCTTTTATGAAGTAGGCATGAAGAATGGTGTCCCTTGGTCATGTCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAGAAGCGCAATATAGgtgagtctcccacaattacaaaaaacataggttgagaaaactggtgtttg Alignment from Pairagon TAATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGAGCTACTCCTCTCGCTATGCTCTGGGCCTCTTTTATGAAGTAGGCATGAAGATTGGTGTCCCTTGGTCCTGCCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAGAAGCGCAATATAG ttctcctacccttaaacaaattcagcataatgttttgaaaacccttaaagTAATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGACCTACTCCTCTCGCTATGCTTTAGGCCTCTTTTATGAAGTAGGCATGAAGAATGGTGTCCCTTGGTCATGTCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAGAAGCGCAATATAGgtgagtctcccacaattacaaaaaacataggttgagaaaactggtgtttg Alignment from Exonerate_protein2genome TAATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGAGCTACTCCTCTCGCTATGCTCTGGGCCTCTTTTATGAAGTAGGCATGAAGATTGGTGTCCCTTGGTCCTGCCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAGAAGCGCAATATAG ttctcctacccttaaacaaattcagcataatgttttgaaaacccttaaagTAATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGACCTACTCCTCTCGCTATGCTTTAGGCCTCTTTTATGAAGTAGGCATGAAGAATGGTGTCCCTTGGTCATGTCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAGAAGCGCAATATAGgtgagtctcccacaattacaaaaaacataggttgagaaaactggtgtttg Alignment from Exonerate_coding2genome TAATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGAGCTACTCCTCTCGCTATGCTCTGGGCCTCTTTTATGAAGTAGGCATGAAGATTGGTGTCCCTTGGTCCTGCCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAGAAGCGCAATATAG ttctcctacccttaaacaaattcagcataatgttttgaaaacccttaaagTAATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGACCTACTCCTCTCGCTATGCTTTAGGCCTCTTTTATGAAGTAGGCATGAAGAATGGTGTCCCTTGGTCATGTCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAGAAGCGCAATATAGgtgagtctcccacaattacaaaaaacataggttgagaaaactggtgtttg Alignment from GeneWise TAATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGAGCTACTCCTCTCGCTATGCTCTGGGCCTCTTTTATGAAGTAGGCATGAAGATTGGTGTCCCTTGGTCCTGCCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAGAAGCGCAATATAG ttctcctacccttaaacaaattcagcataatgttttgaaaacccttaaagTAATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGACCTACTCCTCTCGCTATGCTTTAGGCCTCTTTTATGAAGTAGGCATGAAGAATGGTGTCCCTTGGTCATGTCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAGAAGCGCAATATAGgtgagtctcccacaattacaaaaaacataggttgagaaaactggtgtttg #### Rps6kb2_ID371_11 --> 0 - 0 Original Alignment TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tcttgaccgcctttgttcattttcacccttcctcttctctcctgaattagTTACTGAAGCGAAATCCAACGCAGCAAATTGGGGATGATTTGGGAGATGCTGCTGATGTCCAGgtaatgagatccgttgcttaacctgctggagaacacagagatcgagaaca Alignment from CESAR TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tcttgaccgcctttgttcattttcacccttcctcttctctcctgaattagTTACTGAAGCGAAATCCAACGCAGCAAATTGGGGATGATTTGGGAGATGCTGCTGATGTCCAGgtaatgagatccgttgcttaacctgctggagaacacagagatcgagaaca Alignment from Spaln_aa2Genome TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tcttgaccgcctttgttcattttcacccttcctcttctctcctgaattagTTACTGAAGCGAAATCCAACGCAGCAAATTGGGGATGATTTGGGAGATGCTGCTGATGTCCAGgtaatgagatccgttgcttaacctgctggagaacacagagatcgagaaca Alignment from Spaln_nt2Genome TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tcttgaccgcctttgttcattttcacccttcctcttctctcctgaattagTTACTGAAGCGAAATCCAACGCAGCAAATTGGGGATGATTTGGGAGATGCTGCTGATGTCCAGgtaatgagatccgttgcttaacctgctggagaacacagagatcgagaaca Alignment from Pairagon TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tcttgaccgcctttgttcattttcacccttcctcttctctcctgaattagTTACTGAAGCGAAATCCAACGCAGCAAATTGGGGATGATTTGGGAGATGCTGCTGATGTCCAGgtaatgagatccgttgcttaacctgctggagaacacagagatcgagaaca Alignment from Exonerate_protein2genome TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tcttgaccgcctttgttcattttcacccttcctcttctctcctgaattagTTACTGAAGCGAAATCCAACGCAGCAAATTGGGGATGATTTGGGAGATGCTGCTGATGTCCAGgtaatgagatccgttgcttaacctgctggagaacacagagatcgagaaca Alignment from Exonerate_coding2genome TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tcttgaccgcctttgttcattttcacccttcctcttctctcctgaattagTTACTGAAGCGAAATCCAACGCAGCAAATTGGGGATGATTTGGGAGATGCTGCTGATGTCCAGgtaatgagatccgttgcttaacctgctggagaacacagagatcgagaaca Alignment from GeneWise TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tcttgaccgcctttgttcattttcacccttcctcttctctcctgaattagTTACTGAAGCGAAATCCAACGCAGCAAATTGGGGATGATTTGGGAGATGCTGCTGATGTCCAGgtaatgagatccgttgcttaacctgctggagaacacagagatcgagaaca #### Rrp12_ID8290_33 --> 0 - 2 Original Alignment AAGGCAAAAGGCGATGTAAAGAAGAAGGGCCGCCTGGATCCCTATGCGTACGTTCCACTCAACAGATCCAAGCTCAACCGCag aaattcttcagaacagtttggggcaaagtttcctttttggtactgcccagAAGGCAAAAGGTGATGTAAAGAAGAAAGGCCGCCTAGACCCTTATGCATATGTTCCACTCAACAGATCTAAACTCAACCACaggtgagtcaggcatatagccaccttcccaagtgcaggtagtattggtgtga Alignment from CESAR AAGGCAAAAGGCGATGTAAAGAAGAAGGGCCGCCTGGATCCCTATGCGTACGTTCCACTCAACAGATCCAAGCTCAACCGCag aaattcttcagaacagtttggggcaaagtttcctttttggtactgcccagAAGGCAAAAGGTGATGTAAAGAAGAAAGGCCGCCTAGACCCTTATGCATATGTTCCACTCAACAGATCTAAACTCAACCACaggtgagtcaggcatatagccaccttcccaagtgcaggtagtattggtgtga Alignment from Spaln_aa2Genome AAGGCAAAAGGCGATGTAAAGAAGAAGGGCCGCCTGGATCCCTATGCGTACGTTCCACTCAACAGATCCAAGCTCAACCGCAG aaattcttcagaacagtttggggcaaagtttcctttttggtactgcccagAAGGCAAAAGGTGATGTAAAGAAGAAAGGCCGCCTAGACCCTTATGCATATGTTCCACTCAACAGATCTAAACTCAACCACAGgtgagtcaggcatatagccaccttcccaagtgcaggtagtattggtgtga Alignment from Spaln_nt2Genome AAGGCAAAAGGCGATGTAAAGAAGAAGGGCCGCCTGGATCCCTATGCGTACGTTCCACTCAACAGATCCAAGCTCAACCGCAG aaattcttcagaacagtttggggcaaagtttcctttttggtactgcccagAAGGCAAAAGGTGATGTAAAGAAGAAAGGCCGCCTAGACCCTTATGCATATGTTCCACTCAACAGATCTAAACTCAACCACAGgtgagtcaggcatatagccaccttcccaagtgcaggtagtattggtgtga Alignment from Pairagon AAGGCAAAAGGCGATGTAAAGAAGAAGGGCCGCCTGGATCCCTATGCGTACGTTCCACTCAACAGATCCAAGCTCAACCGCAG aaattcttcagaacagtttggggcaaagtttcctttttggtactgcccagAAGGCAAAAGGTGATGTAAAGAAGAAAGGCCGCCTAGACCCTTATGCATATGTTCCACTCAACAGATCTAAACTCAACCACAGgtgagtcaggcatatagccaccttcccaagtgcaggtagtattggtgtga Alignment from Exonerate_protein2genome AAGGCAAAAGGCGATGTAAAGAAGAAGGGCCGCCTGGATCCCTATGCGTACGTTCCACTCAACAGATCCAAGCTCAACCGCAG aaattcttcagaacagtttggggcaaagtttcctttttggtactgcccagAAGGCAAAAGGTGATGTAAAGAAGAAAGGCCGCCTAGACCCTTATGCATATGTTCCACTCAACAGATCTAAACTCAACCACAGgtgagtcaggcatatagccaccttcccaagtgcaggtagtattggtgtga Alignment from Exonerate_coding2genome aaattcttcagaacagtttggggcaaagtttcctttttggtactgcccagaaggcaaaaggtgatgtaaagaagaaaggccgcctagacccttatgcatatgttccactcaacagatctaaactcaaccacaggtgagtcaggcatatagccaccttcccaagtgcaggtagtattggtgtga Alignment from GeneWise AAGGCAAAAGGCGATGTAAAGAAGAAGGGCCGCCTGGATCCCTATGCGTACGTTCCACTCAACAGATCCAAGCTCAACCGCAG aaattcttcagaacagtttggggcaaagtttcctttttggtactgcccagAAGGCAAAAGGTGATGTAAAGAAGAAAGGCCGCCTAGACCCTTATGCATATGTTCCACTCAACAGATCTAAACTCAACCACAGgtgagtcaggcatatagccaccttcccaagtgcaggtagtattggtgtga #### Rrp12_ID8299_24 --> 2 - 1 Original Alignment acGCTCTGCAGCGGTACCTTGTCCTCATCTATCCTGGCCTTCTGGGTGCAGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAg gtgaatgcataatggaggtgtttatcctttttttgttattgttaatctagatGCTCTGCAACGTTACCTTGTGCTCATCTATCCTGGCCTTCTGGGTGCATTTACTACAGTTAGTTGCAGCATTCTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAggtaagctggataactggtcgtagcaaatcgatcatattgctcctaccatt Alignment from CESAR acGCTCTGCAGCGGTACCTTGTCCTCATCTATCCTGGCCTTCTGGGTGCAGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAg gtgaatgcataatggaggtgtttatcctttttttgttattgttaatctagatGCTCTGCAACGTTACCTTGTGCTCATCTATCCTGGCCTTCTGGGTGCATTTACTACAGTTAGTTGCAGCATTCTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAggtaagctggataactggtcgtagcaaatcgatcatattgctcctaccatt Alignment from Spaln_aa2Genome ACGCTCTGCAGCGGTACCTTGTCCTCATCTATCCTGGCCTTCTGGGTGCAGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAG gtgaatgcataatggaggtgtttatcctttttttgttattgttaatctagATGCTCTGCAACGTTACCTTGTGCTCATCTATCCTGGCCTTCTGGGTGCATTTACTACAGTTAGTTGCAGCATTCTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAGgtaagctggataactggtcgtagcaaatcgatcatattgctcctaccatt Alignment from Spaln_nt2Genome ACGCTCTGCAGCGGTACCTTGTCCTCATCTATCCTGGCCTTCTGGGTGCAGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAG gtgaatgcataatggaggtgtttatcctttttttgttattgttaatctagATGCTCTGCAACGTTACCTTGTGCTCATCTATCCTGGCCTTCTGGGTGCATTTACTACAGTTAGTTGCAGCATTCTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAGgtaagctggataactggtcgtagcaaatcgatcatattgctcctaccatt Alignment from Pairagon ACGCTCTGCAGCGGTACCTTGTCCTCATCTATCCTGGCCTTCTGGGTGCAGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAG gtgaatgcataatggaggtgtttatcctttttttgttattgttaatctagATGCTCTGCAACGTTACCTTGTGCTCATCTATCCTGGCCTTCTGGGTGCATTTACTACAGTTAGTTGCAGCATTCTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAGgtaagctggataactggtcgtagcaaatcgatcatattgctcctaccatt Alignment from Exonerate_protein2genome ACGCTCTGCAGCGGTACCTTGTCCTCATCTATCCTGGCCTTCTGGGTGCAGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAG gtgaatgcataatggaggtgtttatcctttttttgttattgttaatctagATGCTCTGCAACGTTACCTTGTGCTCATCTATCCTGGCCTTCTGGGTGCATTTACTACAGTTAGTTGCAGCATTCTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAGgtaagctggataactggtcgtagcaaatcgatcatattgctcctaccatt Alignment from Exonerate_coding2genome gtgaatgcataatggaggtgtttatcctttttttgttattgttaatctagatgctctgcaacgttaccttgtgctcatctatcctggccttctgggtgcatttactacagttagttgcagcattctggctctgacccacctcttgtttgagttcaaaggtaagctggataactggtcgtagcaaatcgatcatattgctcctaccatt Alignment from GeneWise ACGCTCTGCAGCGGTACCTTGTCCTCATCTATCCTGGCCTTCTGGGTGCAGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAG gtgaatgcataatggaggtgtttatcctttttttgttattgttaatctagATGCTCTGCAACGTTACCTTGTGCTCATCTATCCTGGCCTTCTGGGTGCATTTACTACAGTTAGTTGCAGCATTCTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAGgtaagctggataactggtcgtagcaaatcgatcatattgctcctaccatt #### Rrp12_ID8301_22 --> 0 - 0 Original Alignment CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagacaaacggccaggggcgctgacttgacttttgtctttcagCCC---CTAAAATGTCTCATACATATTGTGAAAACACTGTTAGCTGAACATGAAGAATTCACAGCTGCATTGATCCCTGAGgtaagttggcaggtcagactctggactcctgaagccagacctaaggaggg Alignment from CESAR CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagacaaacggccaggggcgctgacttgacttttgtctttcagCCC---CTAAAATGTCTCATACATATTGTGAAAACACTGTTAGCTGAACATGAAGAATTCACAGCTGCATTGATCCCTGAGgtaagttggcaggtcagactctggactcctgaagccagacctaaggaggg Alignment from Spaln_aa2Genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagacaaacggccaggggcgctgacttgacttttgtctttcagCCC---CTAAAATGTCTCATACATATTGTGAAAACACTGTTAGCTGAACATGAAGAATTCACAGCTGCATTGATCCCTGAGgtaagttggcaggtcagactctggactcctgaagccagacctaaggaggg Alignment from Spaln_nt2Genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagacaaacggccaggggcgctgacttgacttttgtctttcagCCCC---TAAAATGTCTCATACATATTGTGAAAACACTGTTAGCTGAACATGAAGAATTCACAGCTGCATTGATCCCTGAGgtaagttggcaggtcagactctggactcctgaagccagacctaaggaggg Alignment from Pairagon CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagacaaacggccaggggcgctgacttgacttttgtctttcagCCCC---TAAAATGTCTCATACATATTGTGAAAACACTGTTAGCTGAACATGAAGAATTCACAGCTGCATTGATCCCTGAGgtaagttggcaggtcagactctggactcctgaagccagacctaaggaggg Alignment from Exonerate_protein2genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagacaaacggccaggggcgctgacttgacttttgtctttcagCCC---CTAAAATGTCTCATACATATTGTGAAAACACTGTTAGCTGAACATGAAGAATTCACAGCTGCATTGATCCCTGAGgtaagttggcaggtcagactctggactcctgaagccagacctaaggaggg Alignment from Exonerate_coding2genome gaatggttagacaaacggccaggggcgctgacttgacttttgtctttcagcccctaaaatgtctcatacatattgtgaaaacactgttagctgaacatgaagaattcacagctgcattgatccctgaggtaagttggcaggtcagactctggactcctgaagccagacctaaggaggg Alignment from GeneWise CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagacaaacggccaggggcgctgacttgacttttgtctttcagCCC---CTAAAATGTCTCATACATATTGTGAAAACACTGTTAGCTGAACATGAAGAATTCACAGCTGCATTGATCCCTGAGgtaagttggcaggtcagactctggactcctgaagccagacctaaggaggg #### Rrp12_ID8307_16 --> 2 - 0 Original Alignment caATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG ttaataaaaagcacatggcatgacctatgcaccttttcctctcatcccagcaATGGATCTAGCTCAAGCC------ACAGTGGAGTCCAAGATT---GATACACTCCAGTGGCAAgtagaggccaattgggaactgatgagggctgagcacgtttgtgaagtatt Alignment from CESAR caATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG ttaataaaaagcacatggcatgacctatgcaccttttcctctcatcccagcaATGGATCTAGCTCAAGCC------ACAGTGGAGTCCAAGATT---GATACACTCCAGTGGCAAgtagaggccaattgggaactgatgagggctgagcacgtttgtgaagtatt Alignment from Spaln_aa2Genome CAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG ttaataaaaagcacatggcatgacctatgcaccttttcctctcatcccagCAATGGATCTAGCTCAAGCC------ACAGTGGAGTCCAAGATT---GATACACTCCAGTGGCAAgtagaggccaattgggaactgatgagggctgagcacgtttgtgaagtatt Alignment from Spaln_nt2Genome CAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG ttaataaaaagcacatggcatgacctatgcaccttttcctctcatcccagCAATGGATCTAGCTCAAGC------CACAGTGGAGTCCAAGATTG---ATACACTCCAGTGGCAAgtagaggccaattgggaactgatgagggctgagcacgtttgtgaagtatt Alignment from Pairagon CAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGC---------------------------------------------------- ttaataaaaagcacatggcatgacctatgcaccttttcctctcatcccagCAATGGATCTAGCTCAAGC------CACAGTGGAGTCCAAGAT---TGATACACTCCAGTGGCAAGTAGAGGCCAATTGGGAACTGATGAGGGCTGAGCACGTTTGTGAAGTATT Alignment from Exonerate_protein2genome CAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG ttaataaaaagcacatggcatgacctatgcaccttttcctctcatcccagCAATGGATCTAGCTCAAGCC------ACAGTGGAGTCCAAGATT---GATACACTCCAGTGGCAAgtagaggccaattgggaactgatgagggctgagcacgtttgtgaagtatt Alignment from Exonerate_coding2genome ttaataaaaagcacatggcatgacctatgcaccttttcctctcatcccagcaatggatctagctcaagccacagtggagtccaagattgatacactccagtggcaagtagaggccaattgggaactgatgagggctgagcacgtttgtgaagtatt Alignment from GeneWise CAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG ttaataaaaagcacatggcatgacctatgcaccttttcctctcatcccagCAATGGATCTAGCTCAAGCC------ACAGTGGAGTCCAAGATT---GATACACTCCAGTGGCAAgtagaggccaattgggaactgatgagggctgagcacgtttgtgaagtatt #### Rrp12_ID8310_13 --> 1 - 0 Original Alignment gGCAGTGGAAGAGGGCCTCACATACAAATTTCATGCAGCCTGGAGCTCTGTGCTGCAGCTCCTGGGGGTCTTCTTTGAAGCTTGCGGAAAGCAGGCCCATCCTGTGATGAAGAAG aaggcacatgcaattttccaggatgggatgactttggtttctgttgtcaggGCAGTTGAGGATAGCTTATCATATAAATTTCATGCAGCTTGGAGTTCTGTGCTCCAGCTGCTGGGGGTTTTTTTTGAAGCTTGTGGGAAGCAGGCCCATCCCACAATGAAGAAGgtgagtatggccacacttcccaactttaatggtagatgaatgctaagaac Alignment from CESAR gGCAGTGGAAGAGGGCCTCACATACAAATTTCATGCAGCCTGGAGCTCTGTGCTGCAGCTCCTGGGGGTCTTCTTTGAAGCTTGCGGAAAGCAGGCCCATCCTGTGATGAAGAAG aaggcacatgcaattttccaggatgggatgactttggtttctgttgtcaggGCAGTTGAGGATAGCTTATCATATAAATTTCATGCAGCTTGGAGTTCTGTGCTCCAGCTGCTGGGGGTTTTTTTTGAAGCTTGTGGGAAGCAGGCCCATCCCACAATGAAGAAGgtgagtatggccacacttcccaactttaatggtagatgaatgctaagaac Alignment from Spaln_aa2Genome GGCAGTGGAAGAGGGCCTCACATACAAATTTCATGCAGCCTGGAGCTCTGTGCTGCAGCTCCTGGGGGTCTTCTTTGAAGCTTGCGGAAAGCAGGCCCATCCTGTGATGAAGAAG aaggcacatgcaattttccaggatgggatgactttggtttctgttgtcagGGCAGTTGAGGATAGCTTATCATATAAATTTCATGCAGCTTGGAGTTCTGTGCTCCAGCTGCTGGGGGTTTTTTTTGAAGCTTGTGGGAAGCAGGCCCATCCCACAATGAAGAAGgtgagtatggccacacttcccaactttaatggtagatgaatgctaagaac Alignment from Spaln_nt2Genome GGCAGTGGAAGAGGGCCTCACATACAAATTTCATGCAGCCTGGAGCTCTGTGCTGCAGCTCCTGGGGGTCTTCTTTGAAGCTTGCGGAAAGCAGGCCCATCCTGTGATGAAGAAG aaggcacatgcaattttccaggatgggatgactttggtttctgttgtcagGGCAGTTGAGGATAGCTTATCATATAAATTTCATGCAGCTTGGAGTTCTGTGCTCCAGCTGCTGGGGGTTTTTTTTGAAGCTTGTGGGAAGCAGGCCCATCCCACAATGAAGAAGgtgagtatggccacacttcccaactttaatggtagatgaatgctaagaac Alignment from Pairagon GGCAGTGGAAGAGGGCCTCACATACAAATTTCATGCAGCCTGGAGCTCTGTGCTGCAGCTCCTGGGGGTCTTCTTTGAAGCTTGCGGAAAGCAGGCCCATCCTGTGATGAAGAAG aaggcacatgcaattttccaggatgggatgactttggtttctgttgtcagGGCAGTTGAGGATAGCTTATCATATAAATTTCATGCAGCTTGGAGTTCTGTGCTCCAGCTGCTGGGGGTTTTTTTTGAAGCTTGTGGGAAGCAGGCCCATCCCACAATGAAGAAGgtgagtatggccacacttcccaactttaatggtagatgaatgctaagaac Alignment from Exonerate_protein2genome GGCAGTGGAAGAGGGCCTCACATACAAATTTCATGCAGCCTGGAGCTCTGTGCTGCAGCTCCTGGGGGTCTTCTTTGAAGCTTGCGGAAAGCAGGCCCATCCTGTGATGAAGAAG aaggcacatgcaattttccaggatgggatgactttggtttctgttgtcagGGCAGTTGAGGATAGCTTATCATATAAATTTCATGCAGCTTGGAGTTCTGTGCTCCAGCTGCTGGGGGTTTTTTTTGAAGCTTGTGGGAAGCAGGCCCATCCCACAATGAAGAAGgtgagtatggccacacttcccaactttaatggtagatgaatgctaagaac Alignment from Exonerate_coding2genome GGCAGTGGAAGAGGGCCTCACATACAAATTTCATGCAGCCTGGAGCTCTGTGCTGCAGCTCCTGGGGGTCTTCTTTGAAGCTTGCGGAAAGCAGGCCCATCCTGTGATGAAGAAG aaggcacatgcaattttccaggatgggatgactttggtttctgttgtcagGGCAGTTGAGGATAGCTTATCATATAAATTTCATGCAGCTTGGAGTTCTGTGCTCCAGCTGCTGGGGGTTTTTTTTGAAGCTTGTGGGAAGCAGGCCCATCCCACAATGAAGAAGgtgagtatggccacacttcccaactttaatggtagatgaatgctaagaac Alignment from GeneWise GGCAGTGGAAGAGGGCCTCACATACAAATTTCATGCAGCCTGGAGCTCTGTGCTGCAGCTCCTGGGGGTCTTCTTTGAAGCTTGCGGAAAGCAGGCCCATCCTGTGATGAAGAAG aaggcacatgcaattttccaggatgggatgactttggtttctgttgtcagGGCAGTTGAGGATAGCTTATCATATAAATTTCATGCAGCTTGGAGTTCTGTGCTCCAGCTGCTGGGGGTTTTTTTTGAAGCTTGTGGGAAGCAGGCCCATCCCACAATGAAGAAGgtgagtatggccacacttcccaactttaatggtagatgaatgctaagaac #### Rrp12_ID8312_11 --> 1 - 0 Original Alignment gCTGCAGCGAGACCTGGGGCTAGGCCATCTTGCTCGATTTTTCGGAACCGCAGTGACCTGTCTTCTCTCGCCTCATTCACAAGTGGCGGCGGCTGCTACCCAGACTCTCAAG ttgtgtttgcagggagtaacaatttttgatctgtgcccgtcatctgccagaTTGCAGCAAGACCTGGGGCTAGCACAATTAGCTCGATTTTTTGGATCTGACGTGACATGTCTTCTCTCTCCTCATTCACAAGTCGCAGCAGCTGCTACCCAAACTCTAAAAgtaaggtttgcttgggactgccaaattcttttgccaatccctaatcctgt Alignment from CESAR gCTGCAGCGAGACCTGGGGCTAGGCCATCTTGCTCGATTTTTCGGAACCGCAGTGACCTGTCTTCTCTCGCCTCATTCACAAGTGGCGGCGGCTGCTACCCAGACTCTCAAG ttgtgtttgcagggagtaacaatttttgatctgtgcccgtcatctgccagaTTGCAGCAAGACCTGGGGCTAGCACAATTAGCTCGATTTTTTGGATCTGACGTGACATGTCTTCTCTCTCCTCATTCACAAGTCGCAGCAGCTGCTACCCAAACTCTAAAAgtaaggtttgcttgggactgccaaattcttttgccaatccctaatcctgt Alignment from Spaln_aa2Genome GCTGCAGCGAGACCTGGGGCTAGGCCATCTTGCTCGATTTTTCGGAACCGCAGTGACCTGTCTTCTCTCGCCTCATTCACAAGTGGCGGCGGCTGCTACCCAGACTCTCAAG ttgtgtttgcagggagtaacaatttttgatctgtgcccgtcatctgccagATTGCAGCAAGACCTGGGGCTAGCACAATTAGCTCGATTTTTTGGATCTGACGTGACATGTCTTCTCTCTCCTCATTCACAAGTCGCAGCAGCTGCTACCCAAACTCTAAAAgtaaggtttgcttgggactgccaaattcttttgccaatccctaatcctgt Alignment from Spaln_nt2Genome GCTGCAGCGAGACCTGGGGCTAGGCCATCTTGCTCGATTTTTCGGAACCGCAGTGACCTGTCTTCTCTCGCCTCATTCACAAGTGGCGGCGGCTGCTACCCAGACTCTCAAG ttgtgtttgcagggagtaacaatttttgatctgtgcccgtcatctgccagATTGCAGCAAGACCTGGGGCTAGCACAATTAGCTCGATTTTTTGGATCTGACGTGACATGTCTTCTCTCTCCTCATTCACAAGTCGCAGCAGCTGCTACCCAAACTCTAAAAgtaaggtttgcttgggactgccaaattcttttgccaatccctaatcctgt Alignment from Pairagon ATCAACCTGGTCAGGCTGCAGCGAGACCTGGGGCTAGGCCATCTTGCTCGATTTTTCGGAACCGCAGTGACCTGTCTTCTCTCGCCTCATTCACAAGTGGCGGCGGCTGCTACCCAGACTCTCAAG ttgtgtttgcagggagtaacaatttttgatctgtgcccgtcatctgccagAT--------------TGCAGCAAGACCTGGGGCTAGCACAATTAGCTCGATTTTTTGGATCTGACGTGACATGTCTTCTCTCTCCTCATTCACAAGTCGCAGCAGCTGCTACCCAAACTCTAAAAgtaaggtttgcttgggactgccaaattcttttgccaatccctaatcctgt Alignment from Exonerate_protein2genome GCTGCAGCGAGACCTGGGGCTAGGCCATCTTGCTCGATTTTTCGGAACCGCAGTGACCTGTCTTCTCTCGCCTCATTCACAAGTGGCGGCGGCTGCTACCCAGACTCTCAAG ttgtgtttgcagggagtaacaatttttgatctgtgcccgtcatctgccagATTGCAGCAAGACCTGGGGCTAGCACAATTAGCTCGATTTTTTGGATCTGACGTGACATGTCTTCTCTCTCCTCATTCACAAGTCGCAGCAGCTGCTACCCAAACTCTAAAAgtaaggtttgcttgggactgccaaattcttttgccaatccctaatcctgt Alignment from Exonerate_coding2genome GCTGCAGCGAGACCTGGGGCTAGGCCATCTTGCTCGATTTTTCGGAACCGCAGTGACCTGTCTTCTCTCGCCTCATTCACAAGTGGCGGCGGCTGCTACCCAGACTCTCAAG ttgtgtttgcagggagtaacaatttttgatctgtgcccgtcatctgccagATTGCAGCAAGACCTGGGGCTAGCACAATTAGCTCGATTTTTTGGATCTGACGTGACATGTCTTCTCTCTCCTCATTCACAAGTCGCAGCAGCTGCTACCCAAACTCTAAAAgtaaggtttgcttgggactgccaaattcttttgccaatccctaatcctgt Alignment from GeneWise GCTGCAGCGAGACCTGGGGCTAGGCCATCTTGCTCGATTTTTCGGAACCGCAGTGACCTGTCTTCTCTCGCCTCATTCACAAGTGGCGGCGGCTGCTACCCAGACTCTCAAG ttgtgtttgcagggagtaacaatttttgatctgtgcccgtcatctgccagATTGCAGCAAGACCTGGGGCTAGCACAATTAGCTCGATTTTTTGGATCTGACGTGACATGTCTTCTCTCTCCTCATTCACAAGTCGCAGCAGCTGCTACCCAAACTCTAAAAgtaaggtttgcttgggactgccaaattcttttgccaatccctaatcctgt #### Rrp12_ID8317_6 --> 0 - 0 Original Alignment GTCCTCTCCTGCCTGGCCATCCTCCTTCGGAAGCAAGACCTGGAGGCCTGGGGCTATCCCATCACCCTTCAGGTGTACCATGGACTGCTGAGCTTCACCGTGCATGCCAAGCCGAAG tgtatctgatgacacattgactttagtagctttctttcttcctcctgcagGTCCTCTCCTGCCTGGCCATCTTCCTTCGACAACAAGACCTTGAGGCCTGGGGCTATCCAATCACCCTTCAGGTGTACCACGGACTGCTGAGCTTCACAGTGCATGCCAAGCCAAAGgtaagtatcaagatgattcattcttaacacaccatctgagctggcaaaag Alignment from CESAR GTCCTCTCCTGCCTGGCCATCCTCCTTCGGAAGCAAGACCTGGAGGCCTGGGGCTATCCCATCACCCTTCAGGTGTACCATGGACTGCTGAGCTTCACCGTGCATGCCAAGCCGAAG tgtatctgatgacacattgactttagtagctttctttcttcctcctgcagGTCCTCTCCTGCCTGGCCATCTTCCTTCGACAACAAGACCTTGAGGCCTGGGGCTATCCAATCACCCTTCAGGTGTACCACGGACTGCTGAGCTTCACAGTGCATGCCAAGCCAAAGgtaagtatcaagatgattcattcttaacacaccatctgagctggcaaaag Alignment from Spaln_aa2Genome GTCCTCTCCTGCCTGGCCATCCTCCTTCGGAAGCAAGACCTGGAGGCCTGGGGCTATCCCATCACCCTTCAGGTGTACCATGGACTGCTGAGCTTCACCGTGCATGCCAAGCCGAAG tgtatctgatgacacattgactttagtagctttctttcttcctcctgcagGTCCTCTCCTGCCTGGCCATCTTCCTTCGACAACAAGACCTTGAGGCCTGGGGCTATCCAATCACCCTTCAGGTGTACCACGGACTGCTGAGCTTCACAGTGCATGCCAAGCCAAAGgtaagtatcaagatgattcattcttaacacaccatctgagctggcaaaag Alignment from Spaln_nt2Genome GTCCTCTCCTGCCTGGCCATCCTCCTTCGGAAGCAAGACCTGGAGGCCTGGGGCTATCCCATCACCCTTCAGGTGTACCATGGACTGCTGAGCTTCACCGTGCATGCCAAGCCGAAG tgtatctgatgacacattgactttagtagctttctttcttcctcctgcagGTCCTCTCCTGCCTGGCCATCTTCCTTCGACAACAAGACCTTGAGGCCTGGGGCTATCCAATCACCCTTCAGGTGTACCACGGACTGCTGAGCTTCACAGTGCATGCCAAGCCAAAGgtaagtatcaagatgattcattcttaacacaccatctgagctggcaaaag Alignment from Pairagon GTCCTCTCCTGCCTGGCCATCCTCCTTCGGAAGCAAGACCTGGAGGCCTGGGGCTATCCCATCACCCTTCAGGTGTACCATGGACTGCTGAGCTTCACCGTGCATGCCAAGCCGAAG tgtatctgatgacacattgactttagtagctttctttcttcctcctgcagGTCCTCTCCTGCCTGGCCATCTTCCTTCGACAACAAGACCTTGAGGCCTGGGGCTATCCAATCACCCTTCAGGTGTACCACGGACTGCTGAGCTTCACAGTGCATGCCAAGCCAAAGgtaagtatcaagatgattcattcttaacacaccatctgagctggcaaaag Alignment from Exonerate_protein2genome GTCCTCTCCTGCCTGGCCATCCTCCTTCGGAAGCAAGACCTGGAGGCCTGGGGCTATCCCATCACCCTTCAGGTGTACCATGGACTGCTGAGCTTCACCGTGCATGCCAAGCCGAAG tgtatctgatgacacattgactttagtagctttctttcttcctcctgcagGTCCTCTCCTGCCTGGCCATCTTCCTTCGACAACAAGACCTTGAGGCCTGGGGCTATCCAATCACCCTTCAGGTGTACCACGGACTGCTGAGCTTCACAGTGCATGCCAAGCCAAAGgtaagtatcaagatgattcattcttaacacaccatctgagctggcaaaag Alignment from Exonerate_coding2genome GTCCTCTCCTGCCTGGCCATCCTCCTTCGGAAGCAAGACCTGGAGGCCTGGGGCTATCCCATCACCCTTCAGGTGTACCATGGACTGCTGAGCTTCACCGTGCATGCCAAGCCGAAG tgtatctgatgacacattgactttagtagctttctttcttcctcctgcagGTCCTCTCCTGCCTGGCCATCTTCCTTCGACAACAAGACCTTGAGGCCTGGGGCTATCCAATCACCCTTCAGGTGTACCACGGACTGCTGAGCTTCACAGTGCATGCCAAGCCAAAGgtaagtatcaagatgattcattcttaacacaccatctgagctggcaaaag Alignment from GeneWise GTCCTCTCCTGCCTGGCCATCCTCCTTCGGAAGCAAGACCTGGAGGCCTGGGGCTATCCCATCACCCTTCAGGTGTACCATGGACTGCTGAGCTTCACCGTGCATGCCAAGCCGAAG tgtatctgatgacacattgactttagtagctttctttcttcctcctgcagGTCCTCTCCTGCCTGGCCATCTTCCTTCGACAACAAGACCTTGAGGCCTGGGGCTATCCAATCACCCTTCAGGTGTACCACGGACTGCTGAGCTTCACAGTGCATGCCAAGCCAAAGgtaagtatcaagatgattcattcttaacacaccatctgagctggcaaaag #### Rrp12_ID8318_5 --> 1 - 0 Original Alignment gGTGCCAAGTCCTGTGCTCATGAAGAAGTTCTCTGATACCTCCAAAGCCTTCATGGACATCATGTCTGCGCAGGCGAGCAGTGGCTCCACCTCTGCTCTCCGATGG agggtccatacttgctccattttcactgcagtgtaaaccctcttcttcaggGTTCCACGTCCTGTACTGATGAAGAAGTTCTCGGAAACCTCCAAGGCCTTTATGGATATTATGTCTGCACAGGCAAGCAGTGGCTCCACCTCTTCTCTCCGTTGGgtgagcttgtatgtttgtattaccaatggtaatagtcaaaggacaggcac Alignment from CESAR gGTGCCAAGTCCTGTGCTCATGAAGAAGTTCTCTGATACCTCCAAAGCCTTCATGGACATCATGTCTGCGCAGGCGAGCAGTGGCTCCACCTCTGCTCTCCGATGG agggtccatacttgctccattttcactgcagtgtaaaccctcttcttcaggGTTCCACGTCCTGTACTGATGAAGAAGTTCTCGGAAACCTCCAAGGCCTTTATGGATATTATGTCTGCACAGGCAAGCAGTGGCTCCACCTCTTCTCTCCGTTGGgtgagcttgtatgtttgtattaccaatggtaatagtcaaaggacaggcac Alignment from Spaln_aa2Genome GGTGCCAAGTCCTGTGCTCATGAAGAAGTTCTCTGATACCTCCAAAGCCTTCATGGACATCATGTCTGCGCAGGCGAGCAGTGGCTCCACCTCTGCTCTCCGATGG agggtccatacttgctccattttcactgcagtgtaaaccctcttcttcagGGTTCCACGTCCTGTACTGATGAAGAAGTTCTCGGAAACCTCCAAGGCCTTTATGGATATTATGTCTGCACAGGCAAGCAGTGGCTCCACCTCTTCTCTCCGTTGGgtgagcttgtatgtttgtattaccaatggtaatagtcaaaggacaggcac Alignment from Spaln_nt2Genome GGTGCCAAGTCCTGTGCTCATGAAGAAGTTCTCTGATACCTCCAAAGCCTTCATGGACATCATGTCTGCGCAGGCGAGCAGTGGCTCCACCTCTGCTCTCCGATGG agggtccatacttgctccattttcactgcagtgtaaaccctcttcttcagGGTTCCACGTCCTGTACTGATGAAGAAGTTCTCGGAAACCTCCAAGGCCTTTATGGATATTATGTCTGCACAGGCAAGCAGTGGCTCCACCTCTTCTCTCCGTTGGgtgagcttgtatgtttgtattaccaatggtaatagtcaaaggacaggcac Alignment from Pairagon GGTGCCAAGTCCTGTGCTCATGAAGAAGTTCTCTGATACCTCCAAAGCCTTCATGGACATCATGTCTGCGCAGGCGAGCAGTGGCTCCACCTCTGCTCTCCGATGG agggtccatacttgctccattttcactgcagtgtaaaccctcttcttcagGGTTCCACGTCCTGTACTGATGAAGAAGTTCTCGGAAACCTCCAAGGCCTTTATGGATATTATGTCTGCACAGGCAAGCAGTGGCTCCACCTCTTCTCTCCGTTGGgtgagcttgtatgtttgtattaccaatggtaatagtcaaaggacaggcac Alignment from Exonerate_protein2genome GGTGCCAAGTCCTGTGCTCATGAAGAAGTTCTCTGATACCTCCAAAGCCTTCATGGACATCATGTCTGCGCAGGCGAGCAGTGGCTCCACCTCTGCTCTCCGATGG agggtccatacttgctccattttcactgcagtgtaaaccctcttcttcagGGTTCCACGTCCTGTACTGATGAAGAAGTTCTCGGAAACCTCCAAGGCCTTTATGGATATTATGTCTGCACAGGCAAGCAGTGGCTCCACCTCTTCTCTCCGTTGGgtgagcttgtatgtttgtattaccaatggtaatagtcaaaggacaggcac Alignment from Exonerate_coding2genome GGTGCCAAGTCCTGTGCTCATGAAGAAGTTCTCTGATACCTCCAAAGCCTTCATGGACATCATGTCTGCGCAGGCGAGCAGTGGCTCCACCTCTGCTCTCCGATGG agggtccatacttgctccattttcactgcagtgtaaaccctcttcttcagGGTTCCACGTCCTGTACTGATGAAGAAGTTCTCGGAAACCTCCAAGGCCTTTATGGATATTATGTCTGCACAGGCAAGCAGTGGCTCCACCTCTTCTCTCCGTTGGgtgagcttgtatgtttgtattaccaatggtaatagtcaaaggacaggcac Alignment from GeneWise GGTGCCAAGTCCTGTGCTCATGAAGAAGTTCTCTGATACCTCCAAAGCCTTCATGGACATCATGTCTGCGCAGGCGAGCAGTGGCTCCACCTCTGCTCTCCGATGG agggtccatacttgctccattttcactgcagtgtaaaccctcttcttcagGGTTCCACGTCCTGTACTGATGAAGAAGTTCTCGGAAACCTCCAAGGCCTTTATGGATATTATGTCTGCACAGGCAAGCAGTGGCTCCACCTCTTCTCTCCGTTGGgtgagcttgtatgtttgtattaccaatggtaatagtcaaaggacaggcac #### Rrp12_ID8319_4 --> 0 - 2 Original Alignment ATGACAACAATGGAAGCAGTGGAGTCCCCAGAGTCACTGGCTGCCGTTGCATACCTATTGAACCTTGTCCTGAAGcg gtatgcataatatatgctttctcagctttgtctgtttctgtttgtaatagATGACAACGATGGAAGCAGTGGAGTCCCCAAAGACATTGGCGGCCGTTGCATACCTATTAAACCTTGTCCTGAAGcggtaagctatatctgtatgttcagatgtcttaccaagcaaatgttacaagg Alignment from CESAR ATGACAACAATGGAAGCAGTGGAGTCCCCAGAGTCACTGGCTGCCGTTGCATACCTATTGAACCTTGTCCTGAAGcg gtatgcataatatatgctttctcagctttgtctgtttctgtttgtaatagATGACAACGATGGAAGCAGTGGAGTCCCCAAAGACATTGGCGGCCGTTGCATACCTATTAAACCTTGTCCTGAAGcggtaagctatatctgtatgttcagatgtcttaccaagcaaatgttacaagg Alignment from Spaln_aa2Genome ATGACAACAATGGAAGCAGTGGAGTCCCCAGAGTCACTGGCTGCCGTTGCATACCTATTGAACCTTGTCCTGAAGCG gtatgcataatatatgctttctcagctttgtctgtttctgtttgtaatagATGACAACGATGGAAGCAGTGGAGTCCCCAAAGACATTGGCGGCCGTTGCATACCTATTAAACCTTGTCCTGAAGCGgtaagctatatctgtatgttcagatgtcttaccaagcaaatgttacaagg Alignment from Spaln_nt2Genome ATGACAACAATGGAAGCAGTGGAGTCCCCAGAGTCACTGGCTGCCGTTGCATACCTATTGAACCTTGTCCTGAAGCG gtatgcataatatatgctttctcagctttgtctgtttctgtttgtaatagATGACAACGATGGAAGCAGTGGAGTCCCCAAAGACATTGGCGGCCGTTGCATACCTATTAAACCTTGTCCTGAAGCGgtaagctatatctgtatgttcagatgtcttaccaagcaaatgttacaagg Alignment from Pairagon ATGACAACAATGGAAGCAGTGGAGTCCCCAGAGTCACTGGCTGCCGTTGCATACCTATTGAACCTTGTCCTGAAGCG gtatgcataatatatgctttctcagctttgtctgtttctgtttgtaatagATGACAACGATGGAAGCAGTGGAGTCCCCAAAGACATTGGCGGCCGTTGCATACCTATTAAACCTTGTCCTGAAGCGgtaagctatatctgtatgttcagatgtcttaccaagcaaatgttacaagg Alignment from Exonerate_protein2genome ATGACAACAATGGAAGCAGTGGAGTCCCCAGAGTCACTGGCTGCCGTTGCATACCTATTGAACCTTGTCCTGAAGCG gtatgcataatatatgctttctcagctttgtctgtttctgtttgtaatagATGACAACGATGGAAGCAGTGGAGTCCCCAAAGACATTGGCGGCCGTTGCATACCTATTAAACCTTGTCCTGAAGCGgtaagctatatctgtatgttcagatgtcttaccaagcaaatgttacaagg Alignment from Exonerate_coding2genome ATGACAACAATGGAAGCAGTGGAGTCCCCAGAGTCACTGGCTGCCGTTGCATACCTATTGAACCTTGTCCTGAAGCG gtatgcataatatatgctttctcagctttgtctgtttctgtttgtaatagATGACAACGATGGAAGCAGTGGAGTCCCCAAAGACATTGGCGGCCGTTGCATACCTATTAAACCTTGTCCTGAAGCGgtaagctatatctgtatgttcagatgtcttaccaagcaaatgttacaagg Alignment from GeneWise ATGACAACAATGGAAGCAGTGGAGTCCCCAGAGTCACTGGCTGCCGTTGCATACCTATTGAACCTTGTCCTGAAGCG gtatgcataatatatgctttctcagctttgtctgtttctgtttgtaatagATGACAACGATGGAAGCAGTGGAGTCCCCAAAGACATTGGCGGCCGTTGCATACCTATTAAACCTTGTCCTGAAGCGgtaagctatatctgtatgttcagatgtcttaccaagcaaatgttacaagg #### Rrp12_ID8321_2 --> 2 - 0 Original Alignment gaAAGAGCGACCTGACTGTTGATGCTGTGAAGTTGCATAATGAGCTGCAGTCGGGGACCCTGAGCCTGGGCAAAAGCCAAGCCCCTGAGACGACCATGGACCAAGATCCAGAGGTGGCTTTCACCGAGAAGTCCTCGGGCACGTTTCTGAGTGGCTTGTCTGACTGTACAAATGTCACTTTCAGCAAAGTGCAGCGCTTCTGGGAATCCAACTCAGCTGCTCACAAGGAG ctacgtaatgattaagcttcccactagtcttccctttctgtttcctgcagggATGAGTGATCTAACTGTTGATGCTGTAAAGTTACATAATGAGCTTCAGTTGAGGACTCTGTGCCTGGGTAAAAGTCAAGCTGCTGAAACAAGTATGGATCAAGATCCAGAA---GCTTTCACTGAGAAGTCTTCAGGCATGTTTTTGAGTGGCTTATCTGATTGCACAAATGTGACATTTGGAGAGGCTCAACGCTTTTGGGAGTCAAATGCAGTTGCTCGCAAAAAGgtgaggtgtcgcatttagagcattagcatacagcacaccaacttcaccat Alignment from CESAR gaAAGAGCGACCTGACTGTTGATGCTGTGAAGTTGCATAATGAGCTGCAGTCGGGGACCCTGAGCCTGGGCAAAAGCCAAGCCCCTGAGACGACCATGGACCAAGATCCAGAGGTGGCTTTCACCGAGAAGTCCTCGGGCACGTTTCTGAGTGGCTTGTCTGACTGTACAAATGTCACTTTCAGCAAAGTGCAGCGCTTCTGGGAATCCAACTCAGCTGCTCACAAGGAG ctacgtaatgattaagcttcccactagtcttccctttctgtttcctgcagggATGAGTGATCTAACTGTTGATGCTGTAAAGTTACATAATGAGCTTCAGTTGAGGACTCTGTGCCTGGGTAAAAGTCAAGCTGCTGAAACAAGTATGGATCAAGATCCAGAA---GCTTTCACTGAGAAGTCTTCAGGCATGTTTTTGAGTGGCTTATCTGATTGCACAAATGTGACATTTGGAGAGGCTCAACGCTTTTGGGAGTCAAATGCAGTTGCTCGCAAAAAGgtgaggtgtcgcatttagagcattagcatacagcacaccaacttcaccat Alignment from Spaln_aa2Genome GAAAGAGCGACCTGACTGTTGATGCTGTGAAGTTGCATAATGAGCTGCAGTCGGGGACCCTGAGCCTGGGCAAAAGCCAAGCCCCTGAGACGACCATGGACCAAGATCCAGAGGTGGCTTTCACCGAGAAGTCCTCGGGCACGTTTCTGAGTGGCTTGTCTGACTGTACAAATGTCACTTTCAGCAAAGTGCAGCGCTTCTGGGAATCCAACTCAGCTGCTCACAAGGAG ctacgtaatgattaagcttcccactagtcttccctttctgtttcctgcagGGATGAGTGATCTAACTGTTGATGCTGTAAAGTTACATAATGAGCTTCAGTTGAGGACTCTGTGCCTGGGTAAAAGTCAAGCTGCTGAAACAAGTATGGATCAAGATCCAGAA---GCTTTCACTGAGAAGTCTTCAGGCATGTTTTTGAGTGGCTTATCTGATTGCACAAATGTGACATTTGGAGAGGCTCAACGCTTTTGGGAGTCAAATGCAGTTGCTCGCAAAAAGgtgaggtgtcgcatttagagcattagcatacagcacaccaacttcaccat Alignment from Spaln_nt2Genome GAAAGAGCGACCTGACTGTTGATGCTGTGAAGTTGCATAATGAGCTGCAGTCGGGGACCCTGAGCCTGGGCAAAAGCCAAGCCCCTGAGACGACCATGGACCAAGATCCAGAGGTGGCTTTCACCGAGAAGTCCTCGGGCACGTTTCTGAGTGGCTTGTCTGACTGTACAAATGTCACTTTCAGCAAAGTGCAGCGCTTCTGGGAATCCAACTCAGCTGCTCACAAGGAG ctacgtaatgattaagcttcccactagtcttccctttctgtttcctgcagGGATGAGTGATCTAACTGTTGATGCTGTAAAGTTACATAATGAGCTTCAGTTGAGGACTCTGTGCCTGGGTAAAAGTCAAGCTGCTGAAACAAGTATGGATCAAGATCCAGA---AGCTTTCACTGAGAAGTCTTCAGGCATGTTTTTGAGTGGCTTATCTGATTGCACAAATGTGACATTTGGAGAGGCTCAACGCTTTTGGGAGTCAAATGCAGTTGCTCGCAAAAAGgtgaggtgtcgcatttagagcattagcatacagcacaccaacttcaccat Alignment from Pairagon GAAAGAGCGACCTGACTGTTGATGCTGTGAAGTTGCATAATGAGCTGCAGTCGGGGACCCTGAGCCTGGGCAAAAGCCAAGCCCCTGAGACGACCATGGACCAAGATCCAGAGGTGGCTTTCACCGAGAAGTCCTCGGGCACGTTTCTGAGTGGCTTGTCTGACTGTACAAATGTCACTTTCAGCAAAGTGCAGCGCTTCTGGGAATCCAACTCAGCTGCTCACAAGGAG ctacgtaatgattaagcttcccactagtcttccctttctgtttcctgcagGGATGAGTGATCTAACTGTTGATGCTGTAAAGTTACATAATGAGCTTCAGTTGAGGACTCTGTGCCTGGGTAAAAGTCAAGCTGCTGAAACAAGTATGGATCAAGATCCAGA---AGCTTTCACTGAGAAGTCTTCAGGCATGTTTTTGAGTGGCTTATCTGATTGCACAAATGTGACATTTGGAGAGGCTCAACGCTTTTGGGAGTCAAATGCAGTTGCTCGCAAAAAGgtgaggtgtcgcatttagagcattagcatacagcacaccaacttcaccat Alignment from Exonerate_protein2genome GAAAGAGCGACCTGACTGTTGATGCTGTGAAGTTGCATAATGAGCTGCAGTCGGGGACCCTGAGCCTGGGCAAAAGCCAAGCCCCTGAGACGACCATGGACCAAGATCCAGAGGTGGCTTTCACCGAGAAGTCCTCGGGCACGTTTCTGAGTGGCTTGTCTGACTGTACAAATGTCACTTTCAGCAAAGTGCAGCGCTTCTGGGAATCCAACTCAGCTGCTCACAAGGAG ctacgtaatgattaagcttcccactagtcttccctttctgtttcctgcagGGATGAGTGATCTAACTGTTGATGCTGTAAAGTTACATAATGAGCTTCAGTTGAGGACTCTGTGCCTGGGTAAAAGTCAAGCTGCTGAAACAAGTATGGATCAAGATCCAGAA---GCTTTCACTGAGAAGTCTTCAGGCATGTTTTTGAGTGGCTTATCTGATTGCACAAATGTGACATTTGGAGAGGCTCAACGCTTTTGGGAGTCAAATGCAGTTGCTCGCAAAAAGgtgaggtgtcgcatttagagcattagcatacagcacaccaacttcaccat Alignment from Exonerate_coding2genome ctacgtaatgattaagcttcccactagtcttccctttctgtttcctgcagggatgagtgatctaactgttgatgctgtaaagttacataatgagcttcagttgaggactctgtgcctgggtaaaagtcaagctgctgaaacaagtatggatcaagatccagaagctttcactgagaagtcttcaggcatgtttttgagtggcttatctgattgcacaaatgtgacatttggagaggctcaacgcttttgggagtcaaatgcagttgctcgcaaaaaggtgaggtgtcgcatttagagcattagcatacagcacaccaacttcaccat Alignment from GeneWise GAAAGAGCGACCTGACTGTTGATGCTGTGAAGTTGCATAATGAGCTGCAGTCGGGGACCCTGAGCCTGGGCAAAAGCCAAGCCCCTGAGACGACCATGGACCAAGATCCAGAGGTGGCTTTCACCGAGAAGTCCTCGGGCACGTTTCTGAGTGGCTTGTCTGACTGTACAAATGTCACTTTCAGCAAAGTGCAGCGCTTCTGGGAATCCAACTCAGCTGCTCACAAGGAG ctacgtaatgattaagcttcccactagtcttccctttctgtttcctgcagGGATGAGTGATCTAACTGTTGATGCTGTAAAGTTACATAATGAGCTTCAGTTGAGGACTCTGTGCCTGGGTAAAAGTCAAGCTGCTGAAACAAGTATGGATCAAGATCCAGAA---GCTTTCACTGAGAAGTCTTCAGGCATGTTTTTGAGTGGCTTATCTGATTGCACAAATGTGACATTTGGAGAGGCTCAACGCTTTTGGGAGTCAAATGCAGTTGCTCGCAAAAAGgtgaggtgtcgcatttagagcattagcatacagcacaccaacttcaccat #### Sart1_ID960_15 --> 0 - 1 Original Alignment TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAg gaaggcgatctggggtggccacctttccaatcctccctcttgttctgcagTTCTCTGCTTCTTCTACCACTATCTTGGATGAGGAGCCCATAGTGAACCGGGGGCTAGCAGCTGCCCTGCTCCTATGTCAGAACAGAggtaagcctttggggaggctgttattacagttgtatattttattgatcatg Alignment from CESAR TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAg gaaggcgatctggggtggccacctttccaatcctccctcttgttctgcagTTCTCTGCTTCTTCTACCACTATCTTGGATGAGGAGCCCATAGTGAACCGGGGGCTAGCAGCTGCCCTGCTCCTATGTCAGAACAGAggtaagcctttggggaggctgttattacagttgtatattttattgatcatg Alignment from Spaln_aa2Genome TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG gaaggcgatctggggtggccacctttccaatcctccctcttgttctgcagTTCTCTGCTTCTTCTACCACTATCTTGGATGAGGAGCCCATAGTGAACCGGGGGCTAGCAGCTGCCCTGCTCCTATGTCAGAACAGAGgtaagcctttggggaggctgttattacagttgtatattttattgatcatg Alignment from Spaln_nt2Genome TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG gaaggcgatctggggtggccacctttccaatcctccctcttgttctgcagTTCTCTGCTTCTTCTACCACTATCTTGGATGAGGAGCCCATAGTGAACCGGGGGCTAGCAGCTGCCCTGCTCCTATGTCAGAACAGAGgtaagcctttggggaggctgttattacagttgtatattttattgatcatg Alignment from Pairagon TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG gaaggcgatctggggtggccacctttccaatcctccctcttgttctgcagTTCTCTGCTTCTTCTACCACTATCTTGGATGAGGAGCCCATAGTGAACCGGGGGCTAGCAGCTGCCCTGCTCCTATGTCAGAACAGAGgtaagcctttggggaggctgttattacagttgtatattttattgatcatg Alignment from Exonerate_protein2genome TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG gaaggcgatctggggtggccacctttccaatcctccctcttgttctgcagTTCTCTGCTTCTTCTACCACTATCTTGGATGAGGAGCCCATAGTGAACCGGGGGCTAGCAGCTGCCCTGCTCCTATGTCAGAACAGAGgtaagcctttggggaggctgttattacagttgtatattttattgatcatg Alignment from Exonerate_coding2genome gaaggcgatctggggtggccacctttccaatcctccctcttgttctgcagttctctgcttcttctaccactatcttggatgaggagcccatagtgaaccgggggctagcagctgccctgctcctatgtcagaacagaggtaagcctttggggaggctgttattacagttgtatattttattgatcatg Alignment from GeneWise TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG gaaggcgatctggggtggccacctttccaatcctccctcttgttctgcagTTCTCTGCTTCTTCTACCACTATCTTGGATGAGGAGCCCATAGTGAACCGGGGGCTAGCAGCTGCCCTGCTCCTATGTCAGAACAGAGgtaagcctttggggaggctgttattacagttgtatattttattgatcatg #### Sart1_ID961_14 --> 0 - 0 Original Alignment GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tgtgagatacaggtagaatctgtgcattcttggcttttcctcccccccagGACTTTGAGAGGGATGAGGAGCACTCAGCTAATGGTGGATCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACAATCAACCTGGAT------GAACAGCCTCAGGATgtaaggcctcatgaccataggtgaagggcagtgggcatcccccgtaggtt Alignment from CESAR GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tgtgagatacaggtagaatctgtgcattcttggcttttcctcccccccagGACTTTGAGAGGGATGAGGAGCACTCAGCTAATGGTGGATCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACAATCAACCTGGATGAA------CAGCCTCAGGATgtaaggcctcatgaccataggtgaagggcagtgggcatcccccgtaggtt Alignment from Spaln_aa2Genome GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tgtgagatacaggtagaatctgtgcattcttggcttttcctcccccccagGACTTTGAGAGGGATGAGGAGCACTCAGCTAATGGTGGATCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACAATCAACCTGGATGAA------CAGCCTCAGGATgtaaggcctcatgaccataggtgaagggcagtgggcatcccccgtaggtt Alignment from Spaln_nt2Genome GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tgtgagatacaggtagaatctgtgcattcttggcttttcctcccccccagGACTTTGAGAGGGATGAGGAGCACTCAGCTAATGGTGGATCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACAATCAACCTGGATG------AACAGCCTCAGGATgtaaggcctcatgaccataggtgaagggcagtgggcatcccccgtaggtt Alignment from Pairagon GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tgtgagatacaggtagaatctgtgcattcttggcttttcctcccccccagGACTTTGAGAGGGATGAGGAGCACTCAGCTAATGGTGGATCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACAATCAACCTGGATG------AACAGCCTCAGGATgtaaggcctcatgaccataggtgaagggcagtgggcatcccccgtaggtt Alignment from Exonerate_protein2genome GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCAT tgtgagatacaggtagaatctgtgcattcttggcttttcctcccccccagGACTTTGAGAGGGATGAGGAGCACTCAGCTAATGGTGGATCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACAATCAACCTGGATGAACAGCCTCAGGATgtaaggcctcatgaccataggtgaagggcagtgggcatcccccgtaggtt Alignment from Exonerate_coding2genome tgtgagatacaggtagaatctgtgcattcttggcttttcctcccccccaggactttgagagggatgaggagcactcagctaatggtggatctgaatcagatggggaagagaacattggctggagcacaatcaacctggatgaacagcctcaggatgtaaggcctcatgaccataggtgaagggcagtgggcatcccccgtaggtt Alignment from GeneWise GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tgtgagatacaggtagaatctgtgcattcttggcttttcctcccccccagGACTTTGAGAGGGATGAGGAGCACTCAGCTAATGGTGGATCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACAATCAACCTGGATGAA------CAGCCTCAGGATgtaaggcctcatgaccataggtgaagggcagtgggcatcccccgtaggtt #### Sart1_ID962_13 --> 0 - 0 Original Alignment GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG tacttacagattccatactgcctataactcactcctggtctcttgggcagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCATCAGCATGGTTGGGAGGAGGGAGAGGACCCAAAGAGGAGGGGAACATCAGTTTTCAATGCCACATCAGAATTTTGCTGTATACTAGGGGAATCCCCCACATATGAGTTGGTGGGTAACCGTGAAGGGCAGGAGGAGTTGATGgtgagtcaatcaattcttagaccaatcaattcttagcttttattgtaagt Alignment from CESAR GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG tacttacagattccatactgcctataactcactcctggtctcttgggcagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCATCAGCATGGTTGGGAGGAGGGAGAGGACCCAAAGAGGAGGGGAACATCAGTTTTCAATGCCACATCAGAATTTTGCTGTATACTAGGGGAATCCCCCACATATGAGTTGGTGGGTAACCGTGAAGGGCAGGAGGAGTTGATGgtgagtcaatcaattcttagaccaatcaattcttagcttttattgtaagt Alignment from Spaln_aa2Genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG tacttacagattccatactgcctataactcactcctggtctcttgggcagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCATCAGCATGGTTGGGAGGAGGGAGAGGACCCAAAGAGGAGGGGAACATCAGTTTTCAATGCCACATCAGAATTTTGCTGTATACTAGGGGAATCCCCCACATATGAGTTGGTGGGTAACCGTGAAGGGCAGGAGGAGTTGATGgtgagtcaatcaattcttagaccaatcaattcttagcttttattgtaagt Alignment from Spaln_nt2Genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG tacttacagattccatactgcctataactcactcctggtctcttgggcagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCATCAGCATGGTTGGGAGGAGGGAGAGGACCCAAAGAGGAGGGGAACATCAGTTTTCAATGCCACATCAGAATTTTGCTGTATACTAGGGGAATCCCCCACATATGAGTTGGTGGGTAACCGTGAAGGGCAGGAGGAGTTGATGgtgagtcaatcaattcttagaccaatcaattcttagcttttattgtaagt Alignment from Pairagon GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG tacttacagattccatactgcctataactcactcctggtctcttgggcagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCATCAGCATGGTTGGGAGGAGGGAGAGGACCCAAAGAGGAGGGGAACATCAGTTTTCAATGCCACATCAGAATTTTGCTGTATACTAGGGGAATCCCCCACATATGAGTTGGTGGGTAACCGTGAAGGGCAGGAGGAGTTGATGgtgagtcaatcaattcttagaccaatcaattcttagcttttattgtaagt Alignment from Exonerate_protein2genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG tacttacagattccatactgcctataactcactcctggtctcttgggcagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCATCAGCATGGTTGGGAGGAGGGAGAGGACCCAAAGAGGAGGGGAACATCAGTTTTCAATGCCACATCAGAATTTTGCTGTATACTAGGGGAATCCCCCACATATGAGTTGGTGGGTAACCGTGAAGGGCAGGAGGAGTTGATGgtgagtcaatcaattcttagaccaatcaattcttagcttttattgtaagt Alignment from Exonerate_coding2genome tacttacagattccatactgcctataactcactcctggtctcttgggcaggtgctggagattgtgaagaaactagagtcccatcagcatggttgggaggagggagaggacccaaagaggaggggaacatcagttttcaatgccacatcagaattttgctgtatactaggggaatcccccacatatgagttggtgggtaaccgtgaagggcaggaggagttgatggtgagtcaatcaattcttagaccaatcaattcttagcttttattgtaagt Alignment from GeneWise GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG tacttacagattccatactgcctataactcactcctggtctcttgggcagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCATCAGCATGGTTGGGAGGAGGGAGAGGACCCAAAGAGGAGGGGAACATCAGTTTTCAATGCCACATCAGAATTTTGCTGTATACTAGGGGAATCCCCCACATATGAGTTGGTGGGTAACCGTGAAGGGCAGGAGGAGTTGATGgtgagtcaatcaattcttagaccaatcaattcttagcttttattgtaagt #### Sart1_ID964_11 --> 1 - 1 Original Alignment gCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACT---------CGAGTAGAGAACATGGACATCAGTGATGAAg caagatggagaaattcaaagagcataataagtattgtgtctttgtcctagaCTTCGGGGACGGGGAAGGCACCAAGTTCCC------AAGGAGGAGACACTTGAGGATGAGGAGAAGGATCTTGTTGCCAAACCACCTCCATCAGATGACACTCGAGTCATTCGAGTC------ATGGACATCAGTGATGAAggtaagctgttgaagaataggggtccagggtaaatctgcaggcaaggctaa Alignment from CESAR gCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTA---GAGAACATGGACATCAGTGATGAAg caagatggagaaattcaaagagcataataagtattgtgtctttgtcctagaCTTCGGGGACGGGGAAGGCACCAAGTTCCC------AAGGAGGAGACACTTGAGGATGAGGAGAAGGATCTTGTTGCCAAACCACCTCCATCAGATGACACTCGAGTCATTCGAGTCATGGACATCAGTGATGAAggtaagctgttgaagaataggggtccagggtaaatctgcaggcaaggctaa Alignment from Spaln_aa2Genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTA---GAGAACATGGACATCAGTGATGAAG caagatggagaaattcaaagagcataataagtattgtgtctttgtcctagACTTCGGGGACGGGGAAGGCACCAAGTTCCC------AAGGAGGAGACACTTGAGGATGAGGAGAAGGATCTTGTTGCCAAACCACCTCCATCAGATGACACTCGAGTCATTCGAGTCATGGACATCAGTGATGAAGgtaagctgttgaagaataggggtccagggtaaatctgcaggcaaggctaa Alignment from Spaln_nt2Genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTA----GAGAACATGGACATCAGTGATGAAG caagatggagaaattcaaagagcataataagtattgtgtctttgtcctagACTTCGGGGACGGGGAAGGCACCAAGTTCC------CAAGGAGGAGACACTTGAGGATGAGGAGAAGGATCTTGTTGCCAAACCACCTCCATCAGATGACACTCGAGTCATTCGAG-TCATGGACATCAGTGATGAAGgtaagctgttgaagaataggggtccagggtaaatctgcaggcaaggctaa Alignment from Pairagon GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGT------AGAGAACATGGACATCAGTGATGAAG caagatggagaaattcaaagagcataataagtattgtgtctttgtcctagACTTCGGGGACGGGGAAGGCACCAAGTTCCC------AAGGAGGAGACACTTGAGGATGAGGAGAAGGATCTTGTTGCCAAACCACCTCCATCAGATGACACTCGAGTCATTCGAG---TCATGGACATCAGTGATGAAGgtaagctgttgaagaataggggtccagggtaaatctgcaggcaaggctaa Alignment from Exonerate_protein2genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTA---GAGAACATGGACATCAGTGATGAAG caagatggagaaattcaaagagcataataagtattgtgtctttgtcctagACTTCGGGGACGGGGAAGGCACCAAGTTCCC------AAGGAGGAGACACTTGAGGATGAGGAGAAGGATCTTGTTGCCAAACCACCTCCATCAGATGACACTCGAGTCATTCGAGTCATGGACATCAGTGATGAAGgtaagctgttgaagaataggggtccagggtaaatctgcaggcaaggctaa Alignment from Exonerate_coding2genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTA---GAGAACATGGACATCAGTGATGAA caagatggagaaattcaaagagcataataagtattgtgtctttgtcctagACTTCGGGGACGGGGAAGGCACCAAGTTCCC------AAGGAGGAGACACTTGAGGATGAGGAGAAGGATCTTGTTGCCAAACCACCTCCATCAGATGACACTCGAGTCATTCGAGTCATGGACATCAGTGATGAAggtaagctgttgaagaataggggtccagggtaaatctgcaggcaaggctaa Alignment from GeneWise GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTA---GAGAACATGGACATCAGTGATGAAG caagatggagaaattcaaagagcataataagtattgtgtctttgtcctagACTTCGGGGACGGGGAAGGCACCAAGTTCCCAAG------GAGGAGACACTTGAGGATGAGGAGAAGGATCTTGTTGCCAAACCACCTCCATCAGATGACACTCGAGTCATTCGAGTCATGGACATCAGTGATGAAGgtaagctgttgaagaataggggtccagggtaaatctgcaggcaaggctaa #### Sart1_ID970_5 --> 1 - 0 Original Alignment gAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttcatctgcccagggttcaggaagatggacatttttttttcaacctgcagtAAAGTTAAAACTCTGGGAGAAGATGACCCCTGGCTGGACGATACAGCAGCATGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATTTGGCAAAGAAGAGGgtacgtacacatggttcttcaagagcaccatctacctgttaagttaccca Alignment from CESAR gAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttcatctgcccagggttcaggaagatggacatttttttttcaacctgcagtAAAGTTAAAACTCTGGGAGAAGATGACCCCTGGCTGGACGATACAGCAGCATGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATTTGGCAAAGAAGAGGgtacgtacacatggttcttcaagagcaccatctacctgttaagttaccca Alignment from Spaln_aa2Genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttcatctgcccagggttcaggaagatggacatttttttttcaacctgcagTAAAGTTAAAACTCTGGGAGAAGATGACCCCTGGCTGGACGATACAGCAGCATGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATTTGGCAAAGAAGAGGgtacgtacacatggttcttcaagagcaccatctacctgttaagttaccca Alignment from Spaln_nt2Genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttcatctgcccagggttcaggaagatggacatttttttttcaacctgcagTAAAGTTAAAACTCTGGGAGAAGATGACCCCTGGCTGGACGATACAGCAGCATGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATTTGGCAAAGAAGAGGgtacgtacacatggttcttcaagagcaccatctacctgttaagttaccca Alignment from Pairagon GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttcatctgcccagggttcaggaagatggacatttttttttcaacctgcagTAAAGTTAAAACTCTGGGAGAAGATGACCCCTGGCTGGACGATACAGCAGCATGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATTTGGCAAAGAAGAGGgtacgtacacatggttcttcaagagcaccatctacctgttaagttaccca Alignment from Exonerate_protein2genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttcatctgcccagggttcaggaagatggacatttttttttcaacctgcagTAAAGTTAAAACTCTGGGAGAAGATGACCCCTGGCTGGACGATACAGCAGCATGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATTTGGCAAAGAAGAGGgtacgtacacatggttcttcaagagcaccatctacctgttaagttaccca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttcatctgcccagggttcaggaagatggacatttttttttcaacctgcagTAAAGTTAAAACTCTGGGAGAAGATGACCCCTGGCTGGACGATACAGCAGCATGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATTTGGCAAAGAAGAGGgtacgtacacatggttcttcaagagcaccatctacctgttaagttaccca #### Scd1_ID9002_5 --> 1 - 1 Original Alignment gTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTTCGTTAGCACCTTCTTGCGATACACTCTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCGCATCTCTATGGATATCGCCCCTACGACAAGAACATTCAATCCCGGGAGAATATC---CTGGTTTCCCTGGGTGCCGTGg atgtacaataacaatagctttgtaattagtgggtatattttactttctaggTACTACAGGCCCAGCCTCCTACTGATGTGCTTCGTCCTGCCCACACTTGTACCTTGGTACTGCTGGGATGAAACTTTTGTAAACAGCCTATTTGTTAGTACATTCTCTCGCTATACTTTGGTACTTAATGCTACGTGGCTGGTGAATAGTGCTGCACATCTATATGGATACCGTCCTTATGTCAAGAACATTGAATCTCAGGAGAATATTCTTCTTGTACCCCTAGGTGCTGTGggtaagttgctgaactatttatttcattccaataatctgcttgctcagatc Alignment from CESAR gTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTTCGTTAGCACCTTCTTGCGATACACTCTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCGCATCTCTATGGATATCGCCCCTACGACAAGAACATTCAATCCCGGGAGAATATC---CTGGTTTCCCTGGGTGCCGTGg atgtacaataacaatagctttgtaattagtgggtatattttactttctaggTACTACAGGCCCAGCCTCCTACTGATGTGCTTCGTCCTGCCCACACTTGTACCTTGGTACTGCTGGGATGAAACTTTTGTAAACAGCCTATTTGTTAGTACATTCTCTCGCTATACTTTGGTACTTAATGCTACGTGGCTGGTGAATAGTGCTGCACATCTATATGGATACCGTCCTTATGTCAAGAACATTGAATCTCAGGAGAATATTCTTCTTGTACCCCTAGGTGCTGTGggtaagttgctgaactatttatttcattccaataatctgcttgctcagatc Alignment from Spaln_aa2Genome GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTTCGTTAGCACCTTCTTGCGATACACTCTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCGCATCTCTATGGATATCGCCCCTACGACAAGAACATTCAATCCCGGGAGAATATC---CTGGTTTCCCTGGGTGCCGTGG atgtacaataacaatagctttgtaattagtgggtatattttactttctagGTACTACAGGCCCAGCCTCCTACTGATGTGCTTCGTCCTGCCCACACTTGTACCTTGGTACTGCTGGGATGAAACTTTTGTAAACAGCCTATTTGTTAGTACATTCTCTCGCTATACTTTGGTACTTAATGCTACGTGGCTGGTGAATAGTGCTGCACATCTATATGGATACCGTCCTTATGTCAAGAACATTGAATCTCAGGAGAATATTCTTCTTGTACCCCTAGGTGCTGTGGgtaagttgctgaactatttatttcattccaataatctgcttgctcagatc Alignment from Spaln_nt2Genome GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTTCGTTAGCACCTTCTTGCGATACACTCTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCGCATCTCTATGGATATCGCCCCTACGACAAGAACATTCAATCCCGGGAGAATATCCTGGTTT---CCCTGGGTGCCGTGG atgtacaataacaatagctttgtaattagtgggtatattttactttctagGTACTACAGGCCCAGCCTCCTACTGATGTGCTTCGTCCTGCCCACACTTGTACCTTGGTACTGCTGGGATGAAACTTTTGTAAACAGCCTATTTGTTAGTACATTCTCTCGCTATACTTTGGTACTTAATGCTACGTGGCTGGTGAATAGTGCTGCACATCTATATGGATACCGTCCTTATGTCAAGAACATTGAATCTCAGGAGAATATTCTTCTTGTACCCCTAGGTGCTGTGGgtaagttgctgaactatttatttcattccaataatctgcttgctcagatc Alignment from Pairagon GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTTCGTTAGCACCTTCTTGCGATACACTCTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCGCATCTCTATGGATATCGCCCCTACGACAAGAACATTCAATCCCGGGAGAATA---TCCTGGTTTCCCTGGGTGCCGTGG atgtacaataacaatagctttgtaattagtgggtatattttactttctagGTACTACAGGCCCAGCCTCCTACTGATGTGCTTCGTCCTGCCCACACTTGTACCTTGGTACTGCTGGGATGAAACTTTTGTAAACAGCCTATTTGTTAGTACATTCTCTCGCTATACTTTGGTACTTAATGCTACGTGGCTGGTGAATAGTGCTGCACATCTATATGGATACCGTCCTTATGTCAAGAACATTGAATCTCAGGAGAATATTCTTCTTGTACCCCTAGGTGCTGTGGgtaagttgctgaactatttatttcattccaataatctgcttgctcagatc Alignment from Exonerate_protein2genome GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTTCGTTAGCACCTTCTTGCGATACACTCTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCGCATCTCTATGGATATCGCCCCTACGACAAGAACATTCAATCCCGGGAGAATATC---CTGGTTTCCCTGGGTGCCGTGG atgtacaataacaatagctttgtaattagtgggtatattttactttctagGTACTACAGGCCCAGCCTCCTACTGATGTGCTTCGTCCTGCCCACACTTGTACCTTGGTACTGCTGGGATGAAACTTTTGTAAACAGCCTATTTGTTAGTACATTCTCTCGCTATACTTTGGTACTTAATGCTACGTGGCTGGTGAATAGTGCTGCACATCTATATGGATACCGTCCTTATGTCAAGAACATTGAATCTCAGGAGAATATTCTTCTTGTACCCCTAGGTGCTGTGGgtaagttgctgaactatttatttcattccaataatctgcttgctcagatc Alignment from Exonerate_coding2genome GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTTCGTTAGCACCTTCTTGCGATACACTCTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCGCATCTCTATGGATATCGCCCCTACGACAAGAACATTCAATCCCGGGAGAATATC---CTGGTTTCCCTGGGTGCCGTGG atgtacaataacaatagctttgtaattagtgggtatattttactttctagGTACTACAGGCCCAGCCTCCTACTGATGTGCTTCGTCCTGCCCACACTTGTACCTTGGTACTGCTGGGATGAAACTTTTGTAAACAGCCTATTTGTTAGTACATTCTCTCGCTATACTTTGGTACTTAATGCTACGTGGCTGGTGAATAGTGCTGCACATCTATATGGATACCGTCCTTATGTCAAGAACATTGAATCTCAGGAGAATATTCTTCTTGTACCCCTAGGTGCTGTGGgtaagttgctgaactatttatttcattccaataatctgcttgctcagatc Alignment from GeneWise GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTTCGTTAGCACCTTCTTGCGATACACTCTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCGCATCTCTATGGATATCGCCCCTACGACAAGAACATTCAATCCCGGGAGAATATCCTG---GTTTCCCTGGGTGCCGTGG atgtacaataacaatagctttgtaattagtgggtatattttactttctagGTACTACAGGCCCAGCCTCCTACTGATGTGCTTCGTCCTGCCCACACTTGTACCTTGGTACTGCTGGGATGAAACTTTTGTAAACAGCCTATTTGTTAGTACATTCTCTCGCTATACTTTGGTACTTAATGCTACGTGGCTGGTGAATAGTGCTGCACATCTATATGGATACCGTCCTTATGTCAAGAACATTGAATCTCAGGAGAATATTCTTCTTGTACCCCTAGGTGCTGTGGgtaagttgctgaactatttatttcattccaataatctgcttgctcagatc #### Scd1_ID9004_3 --> 2 - 0 Original Alignment ggATTTTCTACTACATGACCAGCGCTCTGGGCATCACAGCCGGGGCTCATCGCCTCTGGAGCCACAGAACTTACAAGGCACGGCTGCCCCTGCGGATCTTCCTTATCATTGCCAACACCATGGCGTTCCAG agatgtgcctgtatattgagtctcccccgtttcctcccgtggtctttcagggATCTTCTTCTATATGACTAGCGCTTTAGGCATAAAAGCTGAGACCCATCACCTCTGGAGCCATAGAACTTATAAAGCACAGTTGCCCATACAGATTTTC---ATCATTTCAAACACCATGGCAATTCAGgttagcgctcttaccgggggtttatactagggtttgtattagtcactaag Alignment from CESAR ggATTTTCTACTACATGACCAGCGCTCTGGGCATCACAGCCGGGGCTCATCGCCTCTGGAGCCACAGAACTTACAAGGCACGGCTGCCCCTGCGGATCTTCCTTATCATTGCCAACACCATGGCGTTCCAG agatgtgcctgtatattgagtctcccccgtttcctcccgtggtctttcagggATCTTCTTCTATATGACTAGCGCTTTAGGCATAAAAGCTGAGACCCATCACCTCTGGAGCCATAGAACTTATAAAGCACAGTTGCCCATACAGATTTTC---ATCATTTCAAACACCATGGCAATTCAGgttagcgctcttaccgggggtttatactagggtttgtattagtcactaag Alignment from Spaln_aa2Genome GGATTTTCTACTACATGACCAGCGCTCTGGGCATCACAGCCGGGGCTCATCGCCTCTGGAGCCACAGAACTTACAAGGCACGGCTGCCCCTGCGGATCTTCCTTATCATTGCCAACACCATGGCGTTCCAG agatgtgcctgtatattgagtctcccccgtttcctcccgtggtctttcagGGATCTTCTTCTATATGACTAGCGCTTTAGGCATAAAAGCTGAGACCCATCACCTCTGGAGCCATAGAACTTATAAAGCACAGTTGCCCATACAGATTTTC---ATCATTTCAAACACCATGGCAATTCAGgttagcgctcttaccgggggtttatactagggtttgtattagtcactaag Alignment from Spaln_nt2Genome GGATTTTCTACTACATGACCAGCGCTCTGGGCATCACAGCCGGGGCTCATCGCCTCTGGAGCCACAGAACTTACAAGGCACGGCTGCCCCTGCGGATCTTCCTTATCATTGCCAACACCATGGCGTTCCAG agatgtgcctgtatattgagtctcccccgtttcctcccgtggtctttcagGGATCTTCTTCTATATGACTAGCGCTTTAGGCATAAAAGCTGAGACCCATCACCTCTGGAGCCATAGAACTTATAAAGCACAGTTGCCCATACAGATTTTCATC---ATTTCAAACACCATGGCAATTCAGgttagcgctcttaccgggggtttatactagggtttgtattagtcactaag Alignment from Pairagon GGATTTTCTACTACATGACCAGCGCTCTGGGCATCACAGCCGGGGCTCATCGCCTCTGGAGCCACAGAACTTACAAGGCACGGCTGCCCCTGCGGATCTTCCTTATCATTGCCAACACCATGGCGTTCCAG agatgtgcctgtatattgagtctcccccgtttcctcccgtggtctttcagGGATCTTCTTCTATATGACTAGCGCTTTAGGCATAAAAGCTGAGACCCATCACCTCTGGAGCCATAGAACTTATAAAGCACAGTTGCCCATACAGATTTTC---ATCATTTCAAACACCATGGCAATTCAGgttagcgctcttaccgggggtttatactagggtttgtattagtcactaag Alignment from Exonerate_protein2genome GGATTTTCTACTACATGACCAGCGCTCTGGGCATCACAGCCGGGGCTCATCGCCTCTGGAGCCACAGAACTTACAAGGCACGGCTGCCCCTGCGGATCTTCCTTATCATTGCCAACACCATGGCGTTCCAG agatgtgcctgtatattgagtctcccccgtttcctcccgtggtctttcagGGATCTTCTTCTATATGACTAGCGCTTTAGGCATAAAAGCTGAGACCCATCACCTCTGGAGCCATAGAACTTATAAAGCACAGTTGCCCATACAGATTTTC---ATCATTTCAAACACCATGGCAATTCAGgttagcgctcttaccgggggtttatactagggtttgtattagtcactaag Alignment from Exonerate_coding2genome GGATTTTCTACTACATGACCAGCGCTCTGGGCATCACAGCCGGGGCTCATCGCCTCTGGAGCCACAGAACTTACAAGGCACGGCTGCCCCTGCGGATCTTCCTTATCATTGCCAACACCATGGCGTTCCAG agatgtgcctgtatattgagtctcccccgtttcctcccgtggtctttcagGGATCTTCTTCTATATGACTAGCGCTTTAGGCATAAAAGCTGAGACCCATCACCTCTGGAGCCATAGAACTTATAAAGCACAGTTGCCCATACAGATTTTC---ATCATTTCAAACACCATGGCAATTCAGgttagcgctcttaccgggggtttatactagggtttgtattagtcactaag Alignment from GeneWise GGATTTTCTACTACATGACCAGCGCTCTGGGCATCACAGCCGGGGCTCATCGCCTCTGGAGCCACAGAACTTACAAGGCACGGCTGCCCCTGCGGATCTTCCTTATCATTGCCAACACCATGGCGTTCCAG agatgtgcctgtatattgagtctcccccgtttcctcccgtggtctttcagGGATCTTCTTCTATATGACTAGCGCTTTAGGCATAAAAGCTGAGACCCATCACCTCTGGAGCCATAGAACTTATAAAGCACAGTTGCCCATACAGATTTTC---ATCATTTCAAACACCATGGCAATTCAGgttagcgctcttaccgggggtttatactagggtttgtattagtcactaag #### Scd2_ID8989_5 --> 1 - 1 Original Alignment gTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCGTCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTGCGTTAGCACCTTCTTGCGATACGCCGTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCCCACCTCTACGGATATCGCCCCTACGACAAGAACATTAGCTCTCGGGAGAACATCTTGGTTTCCATGGGAGCTGTGg caacaagctaccatttgcagctcgtagtaatgcttttctttgacatttaggTACTACAAACCTGGCCTTCTGCCCATGTGCTTTGTCCTGCCCACACTTGTGCCCTGGTACGGCTGGAGTGAAACATTTGTAAACAGCCTGTGTATTAGCACCTTCCTCCGCTATGCTGTGGTGCTTACTGCCACTTGGCTGGTGAATAGTGCTGCC---CTTTATGGTTATCATCCCTTTGACAAGAATATAAGCTCACGGGAGAACATTTTGGTTTCTATGGGAGCTGTTggtaagaaccaacagtagggtcattaagcaattaaggctgtggtctctgga Alignment from CESAR gTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCGTCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTGCGTTAGCACCTTCTTGCGATACGCCGTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCCCACCTCTACGGATATCGCCCCTACGACAAGAACATTAGCTCTCGGGAGAACATCTTGGTTTCCATGGGAGCTGTGg caacaagctaccatttgcagctcgtagtaatgcttttctttgacatttaggTACTACAAACCTGGCCTTCTGCCCATGTGCTTTGTCCTGCCCACACTTGTGCCCTGGTACGGCTGGAGTGAAACATTTGTAAACAGCCTGTGTATTAGCACCTTCCTCCGCTATGCTGTGGTGCTTACTGCCACTTGGCTGGTGAATAGTGCTGCC---CTTTATGGTTATCATCCCTTTGACAAGAATATAAGCTCACGGGAGAACATTTTGGTTTCTATGGGAGCTGTTggtaagaaccaacagtagggtcattaagcaattaaggctgtggtctctgga Alignment from Spaln_aa2Genome GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCGTCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTGCGTTAGCACCTTCTTGCGATACGCCGTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCCCACCTCTACGGATATCGCCCCTACGACAAGAACATTAGCTCTCGGGAGAACATCTTGGTTTCCATGGGAGCTGTGG caacaagctaccatttgcagctcgtagtaatgcttttctttgacatttagGTACTACAAACCTGGCCTTCTGCCCATGTGCTTTGTCCTGCCCACACTTGTGCCCTGGTACGGCTGGAGTGAAACATTTGTAAACAGCCTGTGTATTAGCACCTTCCTCCGCTATGCTGTGGTGCTTACTGCCACTTGGCTGGTGAATAGTGCTGCC---CTTTATGGTTATCATCCCTTTGACAAGAATATAAGCTCACGGGAGAACATTTTGGTTTCTATGGGAGCTGTTGgtaagaaccaacagtagggtcattaagcaattaaggctgtggtctctgga Alignment from Spaln_nt2Genome GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCGTCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTGCGTTAGCACCTTCTTGCGATACGCCGTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCCCACCTCTACGGATATCGCCCCTACGACAAGAACATTAGCTCTCGGGAGAACATCTTGGTTTCCATGGGAGCTGTGG caacaagctaccatttgcagctcgtagtaatgcttttctttgacatttagGTACTACAAACCTGGCCTTCTGCCCATGTGCTTTGTCCTGCCCACACTTGTGCCCTGGTACGGCTGGAGTGAAACATTTGTAAACAGCCTGTGTATTAGCACCTTCCTCCGCTATGCTGTGGTGCTTACTGCCACTTGGCTGGTGAATAGTGCTGC---CCTTTATGGTTATCATCCCTTTGACAAGAATATAAGCTCACGGGAGAACATTTTGGTTTCTATGGGAGCTGTTGgtaagaaccaacagtagggtcattaagcaattaaggctgtggtctctgga Alignment from Pairagon GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCGTCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTGCGTTAGCACCTTCTTGCGATACGCCGTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCCCACCTCTACGGATATCGCCCCTACGACAAGAACATTAGCTCTCGGGAGAACATCTTGGTTTCCATGGGAGCTGTGG caacaagctaccatttgcagctcgtagtaatgcttttctttgacatttagGTACTACAAACCTGGCCTTCTGCCCATGTGCTTTGTCCTGCCCACACTTGTGCCCTGGTACGGCTGGAGTGAAACATTTGTAAACAGCCTGTGTATTAGCACCTTCCTCCGCTATGCTGTGGTGCTTACTGCCACTTGGCTGGTGAATAGTGCTGC---CCTTTATGGTTATCATCCCTTTGACAAGAATATAAGCTCACGGGAGAACATTTTGGTTTCTATGGGAGCTGTTGgtaagaaccaacagtagggtcattaagcaattaaggctgtggtctctgga Alignment from Exonerate_protein2genome GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCGTCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTGCGTTAGCACCTTCTTGCGATACGCCGTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCCCACCTCTACGGATATCGCCCCTACGACAAGAACATTAGCTCTCGGGAGAACATCTTGGTTTCCATGGGAGCTGTGG caacaagctaccatttgcagctcgtagtaatgcttttctttgacatttagGTACTACAAACCTGGCCTTCTGCCCATGTGCTTTGTCCTGCCCACACTTGTGCCCTGGTACGGCTGGAGTGAAACATTTGTAAACAGCCTGTGTATTAGCACCTTCCTCCGCTATGCTGTGGTGCTTACTGCCACTTGGCTGGTGAATAGTGCTGCC---CTTTATGGTTATCATCCCTTTGACAAGAATATAAGCTCACGGGAGAACATTTTGGTTTCTATGGGAGCTGTTGgtaagaaccaacagtagggtcattaagcaattaaggctgtggtctctgga Alignment from Exonerate_coding2genome GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCGTCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTGCGTTAGCACCTTCTTGCGATACGCCGTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCCCACCTCTACGGATATCGCCCCTACGACAAGAACATTAGCTCTCGGGAGAACATCTTGGTTTCCATGGGAGCTGTGG caacaagctaccatttgcagctcgtagtaatgcttttctttgacatttagGTACTACAAACCTGGCCTTCTGCCCATGTGCTTTGTCCTGCCCACACTTGTGCCCTGGTACGGCTGGAGTGAAACATTTGTAAACAGCCTGTGTATTAGCACCTTCCTCCGCTATGCTGTGGTGCTTACTGCCACTTGGCTGGTGAATAGTGCTGCC---CTTTATGGTTATCATCCCTTTGACAAGAATATAAGCTCACGGGAGAACATTTTGGTTTCTATGGGAGCTGTTGgtaagaaccaacagtagggtcattaagcaattaaggctgtggtctctgga Alignment from GeneWise GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCGTCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTGCGTTAGCACCTTCTTGCGATACGCCGTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCCCACCTCTACGGATATCGCCCCTACGACAAGAACATTAGCTCTCGGGAGAACATCTTGGTTTCCATGGGAGCTGTGG caacaagctaccatttgcagctcgtagtaatgcttttctttgacatttagGTACTACAAACCTGGCCTTCTGCCCATGTGCTTTGTCCTGCCCACACTTGTGCCCTGGTACGGCTGGAGTGAAACATTTGTAAACAGCCTGTGTATTAGCACCTTCCTCCGCTATGCTGTGGTGCTTACTGCCACTTGGCTGGTGAATAGTGCTGCC---CTTTATGGTTATCATCCCTTTGACAAGAATATAAGCTCACGGGAGAACATTTTGGTTTCTATGGGAGCTGTTGgtaagaaccaacagtagggtcattaagcaattaaggctgtggtctctgga #### Scd3_ID8975_4 --> 0 - 2 Original Alignment AATGACGTGTATGAATGGGCCCGAGATCACCGAGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTCTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGag tgttcacaagggcttaactgcaaattctcttttttttctcttgaattcagAATGATGTGTATGAATGGGCTCGAGATCCCCGAGCTCACCATAAGTTCTCAGAGTCACATGCTGACCCTCATAACTCACGGCGTGGCTTCTTCTTCTCTCATGTGGGTTGGCTGCTTGTGCGTAAGCACCCAGCTGTAAAAGAGAAGGGTGGCAAACTAGATATGTCAGATCTCAAGGCAAAGAAGTTGGTA---TTCCAAAGGcggtgagaggaggaactccagcctgcctccttgggatgcaattatcacaaat Alignment from CESAR AATGACGTGTATGAATGGGCCCGAGATCACCGAGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTCTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGag tgttcacaagggcttaactgcaaattctcttttttttctcttgaattcagAATGATGTGTATGAATGGGCTCGAGATCCCCGAGCTCACCATAAGTTCTCAGAGTCACATGCTGACCCTCATAACTCACGGCGTGGCTTCTTCTTCTCTCATGTGGGTTGGCTGCTTGTGCGTAAGCACCCAGCTGTAAAAGAGAAGGGTGGCAAACTAGATATGTCAGATCTCAAGGCAAAGAAGTTGGTA---TTCCAAAGGcggtgagaggaggaactccagcctgcctccttgggatgcaattatcacaaat Alignment from Spaln_aa2Genome AATGACGTGTATGAATGGGCCCGAGATCACCGAGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTCTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG tgttcacaagggcttaactgcaaattctcttttttttctcttgaattcagAATGATGTGTATGAATGGGCTCGAGATCCCCGAGCTCACCATAAGTTCTCAGAGTCACATGCTGACCCTCATAACTCACGGCGTGGCTTCTTCTTCTCTCATGTGGGTTGGCTGCTTGTGCGTAAGCACCCAGCTGTAAAAGAGAAGGGTGGCAAACTAGATATGTCAGATCTCAAGGCAAAGAAGTTGGTA---TTCCAAAGGCGgtgagaggaggaactccagcctgcctccttgggatgcaattatcacaaat Alignment from Spaln_nt2Genome AATGACGTGTATGAATGGGCCCGAGATCACCGAGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTCTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG tgttcacaagggcttaactgcaaattctcttttttttctcttgaattcagAATGATGTGTATGAATGGGCTCGAGATCCCCGAGCTCACCATAAGTTCTCAGAGTCACATGCTGACCCTCATAACTCACGGCGTGGCTTCTTCTTCTCTCATGTGGGTTGGCTGCTTGTGCGTAAGCACCCAGCTGTAAAAGAGAAGGGTGGCAAACTAGATATGTCAGATCTCAAGGCAAAGAAGTTGG---TATTCCAAAGGCGgtgagaggaggaactccagcctgcctccttgggatgcaattatcacaaat Alignment from Pairagon AATGACGTGTATGAATGGGCCCGAGATCACCGAGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTCTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG tgttcacaagggcttaactgcaaattctcttttttttctcttgaattcagAATGATGTGTATGAATGGGCTCGAGATCCCCGAGCTCACCATAAGTTCTCAGAGTCACATGCTGACCCTCATAACTCACGGCGTGGCTTCTTCTTCTCTCATGTGGGTTGGCTGCTTGTGCGTAAGCACCCAGCTGTAAAAGAGAAGGGTGGCAAACTAGATATGTCAGATCTCAAGGCAAAGAAGTTGG---TATTCCAAAGGCGgtgagaggaggaactccagcctgcctccttgggatgcaattatcacaaat Alignment from Exonerate_protein2genome AATGACGTGTATGAATGGGCCCGAGATCACCGAGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTCTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG tgttcacaagggcttaactgcaaattctcttttttttctcttgaattcagAATGATGTGTATGAATGGGCTCGAGATCCCCGAGCTCACCATAAGTTCTCAGAGTCACATGCTGACCCTCATAACTCACGGCGTGGCTTCTTCTTCTCTCATGTGGGTTGGCTGCTTGTGCGTAAGCACCCAGCTGTAAAAGAGAAGGGTGGCAAACTAGATATGTCAGATCTCAAGGCAAAGAAGTTGGTA---TTCCAAAGGCGgtgagaggaggaactccagcctgcctccttgggatgcaattatcacaaat Alignment from Exonerate_coding2genome AATGACGTGTATGAATGGGCCCGAGATCACCGAGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTCTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG tgttcacaagggcttaactgcaaattctcttttttttctcttgaattcagAATGATGTGTATGAATGGGCTCGAGATCCCCGAGCTCACCATAAGTTCTCAGAGTCACATGCTGACCCTCATAACTCACGGCGTGGCTTCTTCTTCTCTCATGTGGGTTGGCTGCTTGTGCGTAAGCACCCAGCTGTAAAAGAGAAGGGTGGCAAACTAGATATGTCAGATCTCAAGGCAAAGAAGTTGGTA---TTCCAAAGGCGgtgagaggaggaactccagcctgcctccttgggatgcaattatcacaaat Alignment from GeneWise AATGACGTGTATGAATGGGCCCGAGATCACCGAGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTCTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG tgttcacaagggcttaactgcaaattctcttttttttctcttgaattcagAATGATGTGTATGAATGGGCTCGAGATCCCCGAGCTCACCATAAGTTCTCAGAGTCACATGCTGACCCTCATAACTCACGGCGTGGCTTCTTCTTCTCTCATGTGGGTTGGCTGCTTGTGCGTAAGCACCCAGCTGTAAAAGAGAAGGGTGGCAAACTAGATATGTCAGATCTCAAGGCAAAGAAGTTGGTA---TTCCAAAGGCGgtgagaggaggaactccagcctgcctccttgggatgcaattatcacaaat #### Scd3_ID8976_5 --> 1 - 1 Original Alignment gTACTACAAGCCTGGCATT---------------------------------CTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTCTAAACAGTTTTTATGTTGCCACTTTACTGAGATACGCTGTGGTGCTCAACGCCACTTGGCTGGTGAACAGTGCCGCCCACCTCTACGGGTATCGCCCCTACGATAAGAACATCGATCCCCGGCAGAATGCCCTGGTTTCCTTGGGAAGTATGg ctctctaacagcaattaatcaatcttaatgctttgactgcattgactcagaTGCTACAAGCCTGGGATTCTGTTGATGTGCTTCATTCTCTCTACATTGGTTCTGTTGATGTGCTTCATTCTGTCCACATTGGTGCCCTGGTACTGTTGGGGCAGGGCCTTCCTCACAACCTTTTATGTTGCCACTTTGCTGAGGTATGCAGTAGTGCTGAATGCAACTTGGCTTGTGAACAGTGCAGCACATGTGTACGGATATTGCCCTTACGGTACAAATATTGATCCATGTCATAATGCACTAATT---TTGGGATGTATGggtgagtacaaatgacagcctgcacagtgcattgagaagattcagtttttc Alignment from CESAR gTACTACAAGCCTGGCATTCTGCTGATGTGC---------------------------------TTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTCTAAACAGTTTTTATGTTGCCACTTTACTGAGATACGCTGTGGTGCTCAACGCCACTTGGCTGGTGAACAGTGCCGCCCACCTCTACGGGTATCGCCCCTACGATAAGAACATCGATCCCCGGCAGAATGCCCTGGTTTCCTTGGGAAGTATGg ctctctaacagcaattaatcaatcttaatgctttgactgcattgactcagaTGCTACAAGCCTGGGATTCTGTTGATGTGCTTCATTCTCTCTACATTGGTTCTGTTGATGTGCTTCATTCTGTCCACATTGGTGCCCTGGTACTGTTGGGGCAGGGCCTTCCTCACAACCTTTTATGTTGCCACTTTGCTGAGGTATGCAGTAGTGCTGAATGCAACTTGGCTTGTGAACAGTGCAGCACATGTGTACGGATATTGCCCTTACGGTACAAATATTGATCCATGTCATAATGCACTAATT---TTGGGATGTATGggtgagtacaaatgacagcctgcacagtgcattgagaagattcagtttttc Alignment from Spaln_aa2Genome GTACTACAAGCCTGGCATTCTGCTGATGTGCTTCATC---------------------------------CTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTCTAAACAGTTTTTATGTTGCCACTTTACTGAGATACGCTGTGGTGCTCAACGCCACTTGGCTGGTGAACAGTGCCGCCCACCTCTACGGGTATCGCCCCTACGATAAGAACATCGATCCCCGGCAGAATGCCCTGGTTTCCTTGGGAAGTATGG ctctctaacagcaattaatcaatcttaatgctttgactgcattgactcagATGCTACAAGCCTGGGATTCTGTTGATGTGCTTCATTCTCTCTACATTGGTTCTGTTGATGTGCTTCATTCTGTCCACATTGGTGCCCTGGTACTGTTGGGGCAGGGCCTTCCTCACAACCTTTTATGTTGCCACTTTGCTGAGGTATGCAGTAGTGCTGAATGCAACTTGGCTTGTGAACAGTGCAGCACATGTGTACGGATATTGCCCTTACGGTACAAATATTGATCCATGTCATAATGCACTAATT---TTGGGATGTATGGgtgagtacaaatgacagcctgcacagtgcattgagaagattcagtttttc Alignment from Spaln_nt2Genome GTACTACAAGCCTGGCATTCTGCTGATG---------------------------------TGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTCTAAACAGTTTTTATGTTGCCACTTTACTGAGATACGCTGTGGTGCTCAACGCCACTTGGCTGGTGAACAGTGCCGCCCACCTCTACGGGTATCGCCCCTACGATAAGAACATCGATCCCCGGCAGAATGCCCTGGTTTCCTTGGGAAGTATGG ctctctaacagcaattaatcaatcttaatgctttgactgcattgactcagATGCTACAAGCCTGGGATTCTGTTGATGTGCTTCATTCTCTCTACATTGGTTCTGTTGATGTGCTTCATTCTGTCCACATTGGTGCCCTGGTACTGTTGGGGCAGGGCCTTCCTCACAACCTTTTATGTTGCCACTTTGCTGAGGTATGCAGTAGTGCTGAATGCAACTTGGCTTGTGAACAGTGCAGCACATGTGTACGGATATTGCCCTTACGGTACAAATATTGATCCATGTCATAATGCACTAATT---TTGGGATGTATGGgtgagtacaaatgacagcctgcacagtgcattgagaagattcagtttttc Alignment from Pairagon GTACTACAAGCCTGGCA---------------------------------TTCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTCTAAACAGTTTTTATGTTGCCACTTTACTGAGATACGCTGTGGTGCTCAACGCCACTTGGCTGGTGAACAGTGCCGCCCACCTCTACGGGTATCGCCCCTACGATAAGAACATCGATCCCCGGCAGAATGCCCTGGTTTCCTTGGGAAGTATGG ctctctaacagcaattaatcaatcttaatgctttgactgcattgactcagATGCTACAAGCCTGGGATTCTGTTGATGTGCTTCATTCTCTCTACATTGGTTCTGTTGATGTGCTTCATTCTGTCCACATTGGTGCCCTGGTACTGTTGGGGCAGGGCCTTCCTCACAACCTTTTATGTTGCCACTTTGCTGAGGTATGCAGTAGTGCTGAATGCAACTTGGCTTGTGAACAGTGCAGCACATGTGTACGGATATTGCCCTTACGGTACAAATATTGATCCATGTCATAATGCACTAATT---TTGGGATGTATGGgtgagtacaaatgacagcctgcacagtgcattgagaagattcagtttttc Alignment from Exonerate_protein2genome GTACTACAAGCCTGGCATTCTGCTGATGTGCTTCATCCTGCCCACGCTG GTGCCCTGGTACTGCTGGGGCGAGACTTTTCTAAACAGTTTTTATGTTGCCACTTTACTGAGATACGCTGTGGTGCTCAACGCCACTTGGCTGGTGAACAGTGCCGCCCACCTCTACGGGTATCGCCCCTACGATAAGAACATCGATCCCCGGCAGAATGCCCTGGTTTCCTTGGGAAGTATGG ctctctaacagcaattaatcaatcttaatgctttgactgcattgactcagATGCTACAAGCCTGGGATTCTGTTGATGTGCTTCATTCTCTCTACATTGgttctgttgatgtgcttcattctgtccacattgGTGCCCTGGTACTGTTGGGGCAGGGCCTTCCTCACAACCTTTTATGTTGCCACTTTGCTGAGGTATGCAGTAGTGCTGAATGCAACTTGGCTTGTGAACAGTGCAGCACATGTGTACGGATATTGCCCTTACGGTACAAATATTGATCCATGTCATAATGCACTAATT---TTGGGATGTATGGgtgagtacaaatgacagcctgcacagtgcattgagaagattcagtttttc Alignment from Exonerate_coding2genome GTACTACAAGCCTGGCATTCTGCTGATGTGCTTCATCCTGCCCACGCTG GTGCCCTGGTACTGCTGGGGCGAGACTTTTCTAAACAGTTTTTATGTTGCCACTTTACTGAGATACGCTGTGGTGCTCAACGCCACTTGGCTGGTGAACAGTGCCGCCCACCTCTACGGGTATCGCCCCTACGATAAGAACATCGATCCCCGGCAGAATGCCCTGGTTTCCTTGGGAAGTATGG ctctctaacagcaattaatcaatcttaatgctttgactgcattgactcagATGCTACAAGCCTGGGATTCTGTTGATGTGCTTCATTCTCTCTACATTGgttctgttgatgtgcttcattctgtccacattgGTGCCCTGGTACTGTTGGGGCAGGGCCTTCCTCACAACCTTTTATGTTGCCACTTTGCTGAGGTATGCAGTAGTGCTGAATGCAACTTGGCTTGTGAACAGTGCAGCACATGTGTACGGATATTGCCCTTACGGTACAAATATTGATCCATGTCATAATGCACTAATT---TTGGGATGTATGGgtgagtacaaatgacagcctgcacagtgcattgagaagattcagtttttc Alignment from GeneWise GTACTACAAGCCTGGCATT---------------------------------CTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTCTAAACAGTTTTTATGTTGCCACTTTACTGAGATACGCTGTGGTGCTCAACGCCACTTGGCTGGTGAACAGTGCCGCCCACCTCTACGGGTATCGCCCCTACGATAAGAACATCGATCCCCGGCAGAATGCCCTGGTTTCCTTGGGAAGTATGG ctctctaacagcaattaatcaatcttaatgctttgactgcattgactcagATGCTACAAGCCTGGGATTCTGTTGATGTGCTTCATTCTCTCTACATTGGTTCTGTTGATGTGCTTCATTCTGTCCACATTGGTGCCCTGGTACTGTTGGGGCAGGGCCTTCCTCACAACCTTTTATGTTGCCACTTTGCTGAGGTATGCAGTAGTGCTGAATGCAACTTGGCTTGTGAACAGTGCAGCACATGTGTACGGATATTGCCCTTACGGTACAAATATTGATCCATGTCATAATGCACTAATT---TTGGGATGTATGGgtgagtacaaatgacagcctgcacagtgcattgagaagattcagtttttc #### Sec31b_ID9029_23 --> 0 - 0 Original Alignment CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT acattcttagtagtatatttcggttgggctgatgtttcccctcccattagCAACTACAGCCGTTACCTCCTGAGAGGACAGAGAAAGAGTTGCCTTCAGACCATCAGTGTGTAAAAGACAGCTTTGATGCACTCCTCCAGCACTGTTCTTTGACTGCAACCAGCCTTgtgagtgcagcctttggtcctccaaactctaaattgctgatgcctacaac Alignment from CESAR CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT acattcttagtagtatatttcggttgggctgatgtttcccctcccattagCAACTACAGCCGTTACCTCCTGAGAGGACAGAGAAAGAGTTGCCTTCAGACCATCAGTGTGTAAAAGACAGCTTTGATGCACTCCTCCAGCACTGTTCTTTGACTGCAACCAGCCTTgtgagtgcagcctttggtcctccaaactctaaattgctgatgcctacaac Alignment from Spaln_aa2Genome CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT acattcttagtagtatatttcggttgggctgatgtttcccctcccattagCAACTACAGCCGTTACCTCCTGAGAGGACAGAGAAAGAGTTGCCTTCAGACCATCAGTGTGTAAAAGACAGCTTTGATGCACTCCTCCAGCACTGTTCTTTGACTGCAACCAGCCTTgtgagtgcagcctttggtcctccaaactctaaattgctgatgcctacaac Alignment from Spaln_nt2Genome CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT acattcttagtagtatatttcggttgggctgatgtttcccctcccattagCAACTACAGCCGTTACCTCCTGAGAGGACAGAGAAAGAGTTGCCTTCAGACCATCAGTGTGTAAAAGACAGCTTTGATGCACTCCTCCAGCACTGTTCTTTGACTGCAACCAGCCTTgtgagtgcagcctttggtcctccaaactctaaattgctgatgcctacaac Alignment from Pairagon CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT acattcttagtagtatatttcggttgggctgatgtttcccctcccattagCAACTACAGCCGTTACCTCCTGAGAGGACAGAGAAAGAGTTGCCTTCAGACCATCAGTGTGTAAAAGACAGCTTTGATGCACTCCTCCAGCACTGTTCTTTGACTGCAACCAGCCTTgtgagtgcagcctttggtcctccaaactctaaattgctgatgcctacaac Alignment from Exonerate_protein2genome CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT acattcttagtagtatatttcggttgggctgatgtttcccctcccattagCAACTACAGCCGTTACCTCCTGAGAGGACAGAGAAAGAGTTGCCTTCAGACCATCAGTGTGTAAAAGACAGCTTTGATGCACTCCTCCAGCACTGTTCTTTGACTGCAACCAGCCTTgtgagtgcagcctttggtcctccaaactctaaattgctgatgcctacaac Alignment from Exonerate_coding2genome CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT acattcttagtagtatatttcggttgggctgatgtttcccctcccattagCAACTACAGCCGTTACCTCCTGAGAGGACAGAGAAAGAGTTGCCTTCAGACCATCAGTGTGTAAAAGACAGCTTTGATGCACTCCTCCAGCACTGTTCTTTGACTGCAACCAGCCTTgtgagtgcagcctttggtcctccaaactctaaattgctgatgcctacaac Alignment from GeneWise CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT acattcttagtagtatatttcggttgggctgatgtttcccctcccattagCAACTACAGCCGTTACCTCCTGAGAGGACAGAGAAAGAGTTGCCTTCAGACCATCAGTGTGTAAAAGACAGCTTTGATGCACTCCTCCAGCACTGTTCTTTGACTGCAACCAGCCTTgtgagtgcagcctttggtcctccaaactctaaattgctgatgcctacaac #### Sec31b_ID9031_21 --> 2 - 0 Original Alignment gaCCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG gttgtcagtgattagtaacccctgcctatgttttcctcttctggatgcagggCCCCAGGACTCATGGAAAGTTACGCCTGCCTCCGAGGGCAATCTTCAAAGGAAGAAAgtgagtgcctttccataaccattaacctaatccatccctatgttcttaca Alignment from CESAR gaCCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG gttgtcagtgattagtaacccctgcctatgttttcctcttctggatgcagggCCCCAGGACTCATGGAAAGTTACGCCTGCCTCCGAGGGCAATCTTCAAAGGAAGAAAgtgagtgcctttccataaccattaacctaatccatccctatgttcttaca Alignment from Spaln_aa2Genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG gttgtcagtgattagtaacccctgcctatgttttcctcttctggatgcagGGCCCCAGGACTCATGGAAAGTTACGCCTGCCTCCGAGGGCAATCTTCAAAGGAAGAAAgtgagtgcctttccataaccattaacctaatccatccctatgttcttaca Alignment from Spaln_nt2Genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG gttgtcagtgattagtaacccctgcctatgttttcctcttctggatgcagGGCCCCAGGACTCATGGAAAGTTACGCCTGCCTCCGAGGGCAATCTTCAAAGGAAGAAAgtgagtgcctttccataaccattaacctaatccatccctatgttcttaca Alignment from Pairagon GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG gttgtcagtgattagtaacccctgcctatgttttcctcttctggatgcagGGCCCCAGGACTCATGGAAAGTTACGCCTGCCTCCGAGGGCAATCTTCAAAGGAAGAAAgtgagtgcctttccataaccattaacctaatccatccctatgttcttaca Alignment from Exonerate_protein2genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG gttgtcagtgattagtaacccctgcctatgttttcctcttctggatgcagGGCCCCAGGACTCATGGAAAGTTACGCCTGCCTCCGAGGGCAATCTTCAAAGGAAGAAAgtgagtgcctttccataaccattaacctaatccatccctatgttcttaca Alignment from Exonerate_coding2genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG gttgtcagtgattagtaacccctgcctatgttttcctcttctggatgcagGGCCCCAGGACTCATGGAAAGTTACGCCTGCCTCCGAGGGCAATCTTCAAAGGAAGAAAgtgagtgcctttccataaccattaacctaatccatccctatgttcttaca Alignment from GeneWise GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG gttgtcagtgattagtaacccctgcctatgttttcctcttctggatgcagGGCCCCAGGACTCATGGAAAGTTACGCCTGCCTCCGAGGGCAATCTTCAAAGGAAGAAAgtgagtgcctttccataaccattaacctaatccatccctatgttcttaca #### Sec31b_ID9034_18 --> 0 - 0 Original Alignment CCAGGAGTTCAGCAGCTGAGAGATCGGCTTTTTCATGCCCAAGGTTCTGCCGTCTTAGGCCAACAGGCTCCTGCTTTCCCTTTCCCCCGAGTTGCTGTAGGAGCTGCCCTCCACTCCAAAGAGACATCGTCATACAGAAGGGGGCTCCAGCCTCCTCAGCAG tccaccaacactcaacttaaccttctgtctgtgttgtctgtttcttgcagCCAGGAGTTCTCCAATTGAGAGACCGGCTTTTTCATGCCCAAGGCTCTGCCATTCTAGGACAGCAGGCT------TTCCCCTTCCCTCGGGTTGCCGTTGGAGCCTCTCTCCACTCCAGAAAAACTTCATCATACAAAAAGGGTCTCCAGCGTCCTCAGCAAgtgagttcttccctatggagaatgtcttttcctgtccgacttctattttt Alignment from CESAR CCAGGAGTTCAGCAGCTGAGAGATCGGCTTTTTCATGCCCAAGGTTCTGCCGTCTTAGGCCAACAGGCTCCTGCTTTCCCTTTCCCCCGAGTTGCTGTAGGAGCTGCCCTCCACTCCAAAGAGACATCGTCATACAGAAGGGGGCTCCAGCCTCCTCAGCAG tccaccaacactcaacttaaccttctgtctgtgttgtctgtttcttgcagCCAGGAGTTCTCCAATTGAGAGACCGGCTTTTTCATGCCCAAGGCTCTGCCATTCTAGGACAGCAG------GCTTTCCCCTTCCCTCGGGTTGCCGTTGGAGCCTCTCTCCACTCCAGAAAAACTTCATCATACAAAAAGGGTCTCCAGCGTCCTCAGCAAgtgagttcttccctatggagaatgtcttttcctgtccgacttctattttt Alignment from Spaln_aa2Genome CCAGGAGTTCAGCAGCTGAGAGATCGGCTTTTTCATGCCCAAGGTTCTGCCGTCTTAGGCCAACAGGCTCCTGCTTTCCCTTTCCCCCGAGTTGCTGTAGGAGCTGCCCTCCACTCCAAAGAGACATCGTCATACAGAAGGGGGCTCCAGCCTCCTCAGCAG tccaccaacactcaacttaaccttctgtctgtgttgtctgtttcttgcagCCAGGAGTTCTCCAATTGAGAGACCGGCTTTTTCATGCCCAAGGCTCTGCCATTCTAGGACAGCAG------GCTTTCCCCTTCCCTCGGGTTGCCGTTGGAGCCTCTCTCCACTCCAGAAAAACTTCATCATACAAAAAGGGTCTCCAGCGTCCTCAGCAAgtgagttcttccctatggagaatgtcttttcctgtccgacttctattttt Alignment from Spaln_nt2Genome CCAGGAGTTCAGCAGCTGAGAGATCGGCTTTTTCATGCCCAAGGTTCTGCCGTCTTAGGCCAACAGGCTCCTGCTTTCCCTTTCCCCCGAGTTGCTGTAGGAGCTGCCCTCCACTCCAAAGAGACATCGTCATACAGAAGGGGGCTCCAGCCTCCTCAGCAG tccaccaacactcaacttaaccttctgtctgtgttgtctgtttcttgcagCCAGGAGTTCTCCAATTGAGAGACCGGCTTTTTCATGCCCAAGGCTCTGCCATTCTAGGACAGCAG------GCTTTCCCCTTCCCTCGGGTTGCCGTTGGAGCCTCTCTCCACTCCAGAAAAACTTCATCATACAAAAAGGGTCTCCAGCGTCCTCAGCAAgtgagttcttccctatggagaatgtcttttcctgtccgacttctattttt Alignment from Pairagon CCAGGAGTTCAGCAGCTGAGAGATCGGCTTTTTCATGCCCAAGGTTCTGCCGTCTTAGGCCAACAGGCTCCTGCTTTCCCTTTCCCCCGAGTTGCTGTAGGAGCTGCCCTCCACTCCAAAGAGACATCGTCATACAGAAGGGGGCTCCAGCCTCCTCAGCAG tccaccaacactcaacttaaccttctgtctgtgttgtctgtttcttgcagCCAGGAGTTCTCCAATTGAGAGACCGGCTTTTTCATGCCCAAGGCTCTGCCATTCTAGGACAGCAG------GCTTTCCCCTTCCCTCGGGTTGCCGTTGGAGCCTCTCTCCACTCCAGAAAAACTTCATCATACAAAAAGGGTCTCCAGCGTCCTCAGCAAgtgagttcttccctatggagaatgtcttttcctgtccgacttctattttt Alignment from Exonerate_protein2genome CCAGGAGTTCAGCAGCTGAGAGATCGGCTTTTTCATGCCCAAGGTTCTGCCGTCTTAGGCCAACAGGCTCCTGCTTTCCCTTTCCCCCGAGTTGCTGTAGGAGCTGCCCTCCACTCCAAAGAGACATCGTCATACAGAAGGGGGCTCCAGCCTCCTCAGCAG tccaccaacactcaacttaaccttctgtctgtgttgtctgtttcttgcagCCAGGAGTTCTCCAATTGAGAGACCGGCTTTTTCATGCCCAAGGCTCTGCCATTCTAGGACAGCAG------GCTTTCCCCTTCCCTCGGGTTGCCGTTGGAGCCTCTCTCCACTCCAGAAAAACTTCATCATACAAAAAGGGTCTCCAGCGTCCTCAGCAAgtgagttcttccctatggagaatgtcttttcctgtccgacttctattttt Alignment from Exonerate_coding2genome CCAGGAGTTCAGCAGCTGAGAGATCGGCTTTTTCATGCCCAAGGTTCTGCCGTCTTAGGCCAACAGGCTCCTGCTTTCCCTTTCCCCCGAGTTGCTGTAGGAGCTGCCCTCCACTCCAAAGAGACATCGTCATACAGAAGGGGGCTCCAGCCTCCTCAGCAG tccaccaacactcaacttaaccttctgtctgtgttgtctgtttcttgcagCCAGGAGTTCTCCAATTGAGAGACCGGCTTTTTCATGCCCAAGGCTCTGCCATTCTAGGACAGCAG------GCTTTCCCCTTCCCTCGGGTTGCCGTTGGAGCCTCTCTCCACTCCAGAAAAACTTCATCATACAAAAAGGGTCTCCAGCGTCCTCAGCAAgtgagttcttccctatggagaatgtcttttcctgtccgacttctattttt Alignment from GeneWise CCAGGAGTTCAGCAGCTGAGAGATCGGCTTTTTCATGCCCAAGGTTCTGCCGTCTTAGGCCAACAGGCTCCTGCTTTCCCTTTCCCCCGAGTTGCTGTAGGAGCTGCCCTCCACTCCAAAGAGACATCGTCATACAGAAGGGGGCTCCAGCCTCCTCAGCAG tccaccaacactcaacttaaccttctgtctgtgttgtctgtttcttgcagCCAGGAGTTCTCCAATTGAGAGACCGGCTTTTTCATGCCCAAGGCTCTGCCATTCTAGGACAGCAGGCT------TTCCCCTTCCCTCGGGTTGCCGTTGGAGCCTCTCTCCACTCCAGAAAAACTTCATCATACAAAAAGGGTCTCCAGCGTCCTCAGCAAgtgagttcttccctatggagaatgtcttttcctgtccgacttctattttt #### Sec31b_ID9050_2 --> 2 - 2 Original Alignment gaACATCTGCTCAGCAACTAGATGCCTCCTTTAGCACAAATGCCACCCTGGAAATATTTGAGATTGATTTCAGGGACCCTTCTCTGGACTTGAAACACAAAGGAATTCTTTCTGTCTCCAGCag ctcttgtgctcattcattgtgttttctcgtacatgactgtttgcctgcaggcTCATCTACTCAGCATCAAGATTTGTCTTCCAGCACAAATGCCACCCAGGAGATATTTGACATTGACTTCAGGGACCCTTCC---CACTCAAAACACAGAGGAATCCTGTCACTTTTCAGCaggtacagattagttttacacatctgatgtcagtttaggtcatgaatgtgac Alignment from CESAR gaACATCTGCTCAGCAACTAGATGCCTCCTTTAGCACAAATGCCACCCTGGAAATATTTGAGATTGATTTCAGGGACCCTTCTCTGGACTTGAAACACAAAGGAATTCTTTCTGTCTCCAGCag ctcttgtgctcattcattgtgttttctcgtacatgactgtttgcctgcaggcTCATCTACTCAGCATCAAGATTTGTCTTCCAGCACAAATGCCACCCAGGAGATATTTGACATTGACTTCAGGGACCCTTCC---CACTCAAAACACAGAGGAATCCTGTCACTTTTCAGCaggtacagattagttttacacatctgatgtcagtttaggtcatgaatgtgac Alignment from Spaln_aa2Genome GAACATCTGCTCAGCAACTAGATGCCTCCTTTAGCACAAATGCCACCCTGGAAATATTTGAGATTGATTTCAGGGACCCTTCTCTGGACTTGAAACACAAAGGAATTCTTTCTGTCTCCAGCAG ctcttgtgctcattcattgtgttttctcgtacatgactgtttgcctgcagGCTCATCTACTCAGCATCAAGATTTGTCTTCCAGCACAAATGCCACCCAGGAGATATTTGACATTGACTTCAGGGACCCTTCC---CACTCAAAACACAGAGGAATCCTGTCACTTTTCAGCAGgtacagattagttttacacatctgatgtcagtttaggtcatgaatgtgac Alignment from Spaln_nt2Genome GAACATCTGCTCAGCAACTAGATGCCTCCTTTAGCACAAATGCCACCCTGGAAATATTTGAGATTGATTTCAGGGACCCTTCTCTGGACTTGAAACACAAAGGAATTCTTTCTGTCTCCAGCAG ctcttgtgctcattcattgtgttttctcgtacatgactgtttgcctgcagGCTCATCTACTCAGCATCAAGATTTGTCTTCCAGCACAAATGCCACCCAGGAGATATTTGACATTGACTTCAGGGACCCTTCCC---ACTCAAAACACAGAGGAATCCTGTCACTTTTCAGCAGgtacagattagttttacacatctgatgtcagtttaggtcatgaatgtgac Alignment from Pairagon GAACATCTGCTCAGCAACTAGATGCCTCCTTTAGCACAAATGCCACCCTGGAAATATTTGAGATTGATTTCAGGGACCCTTCTCTGGACTTGAAACACAAAGGAATTCTTTCTGTCTCCAGCAG ctcttgtgctcattcattgtgttttctcgtacatgactgtttgcctgcagGCTCATCTACTCAGCATCAAGATTTGTCTTCCAGCACAAATGCCACCCAGGAGATATTTGACATTGACTTCAGGGACCCTTCCC---ACTCAAAACACAGAGGAATCCTGTCACTTTTCAGCAGgtacagattagttttacacatctgatgtcagtttaggtcatgaatgtgac Alignment from Exonerate_protein2genome GAACATCTGCTCAGCAACTAGATGCCTCCTTTAGCACAAATGCCACCCTGGAAATATTTGAGATTGATTTCAGGGACCCTTCTCTGGACTTGAAACACAAAGGAATTCTTTCTGTCTCCAGCAG ctcttgtgctcattcattgtgttttctcgtacatgactgtttgcctgcagGCTCATCTACTCAGCATCAAGATTTGTCTTCCAGCACAAATGCCACCCAGGAGATATTTGACATTGACTTCAGGGACCCTTCC---CACTCAAAACACAGAGGAATCCTGTCACTTTTCAGCAGgtacagattagttttacacatctgatgtcagtttaggtcatgaatgtgac Alignment from Exonerate_coding2genome CTGGCCACAGGAACATCTGCTCAGCAACTAGATGCCTCCTTTAGCACAAATGCCACCCTGGAAATATTTGAGATTGATTTCAGGGACCCTTCTCTGGACTTGAAACACAAAGGAATTCTTTCTGTCTCCAGCAG ctcttgtgctcattcattgtgttttctcgtacatgactgtTTGCCTGCAGGCTCATCTACTCAGCATCAAGATTTGTCTTCCAGCACAAATGCCACCCAGGAGATATTTGACATTGACTTCAGGGACCCTTCC---CACTCAAAACACAGAGGAATCCTGTCACTTTTCAGCAGgtacagattagttttacacatctgatgtcagtttaggtcatgaatgtgac Alignment from GeneWise GAACATCTGCTCAGCAACTAGATGCCTCCTTTAGCACAAATGCCACCCTGGAAATATTTGAGATTGATTTCAGGGACCCTTCTCTGGACTTGAAACACAAAGGAATTCTTTCTGTCTCCAGCAG ctcttgtgctcattcattgtgttttctcgtacatgactgtttgcctgcagGCTCATCTACTCAGCATCAAGATTTGTCTTCCAGCACAAATGCCACCCAGGAGATATTTGACATTGACTTCAGGGACCCTTCCCACTCA---AAACACAGAGGAATCCTGTCACTTTTCAGCAGgtacagattagttttacacatctgatgtcagtttaggtcatgaatgtgac #### Sema4g_ID9244_2 --> 2 - 0 Original Alignment agCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gtgcattaggaaattatttacctacttgccgcttctcctttactctgcagaaGTTTCACAAGTGCAACACTTTAGGGGGCAGGCCCAAATTCATTCAACATTGCTGTTGGAGGAGGCTTCTGAAAAGCTGTCAGCAGGGGCGCGAGGTCCATTGTTCTCCCTC------AGTGAAATCAGAGAGAGAACACATAAAGAGgtaatgtgctgatattgggtttacaggaccccacatttggcttctggtcc Alignment from CESAR agCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gtgcattaggaaattatttacctacttgccgcttctcctttactctgcagaaGTTTCACAAGTGCAACACTTTAGGGGGCAGGCCCAAATTCATTCAACATTGCTGTTGGAGGAGGCTTCTGAAAAGCTGTCAGCAGGGGCGCGAGGTCCATTGTTCTCCCTCAGT------GAAATCAGAGAGAGAACACATAAAGAGgtaatgtgctgatattgggtttacaggaccccacatttggcttctggtcc Alignment from Spaln_aa2Genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gtgcattaggaaattatttacctacttgccgcttctcctttactctgcagAAGTTTCACAAGTGCAACACTTTAGGGGGCAGGCCCAAATTCATTCAACATTGCTGTTGGAGGAGGCTTCTGAAAAGCTGTCAGCAGGGGCGCGAGGTCCATTGTTCTCCCTCAGT------GAAATCAGAGAGAGAACACATAAAGAGgtaatgtgctgatattgggtttacaggaccccacatttggcttctggtcc Alignment from Spaln_nt2Genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gtgcattaggaaattatttacctacttgccgcttctcctttactctgcagAAGTTTCACAAGTGCAACACTTTAGGGGGCAGGCCCAAATTCATTCAACATTGCTGTTGGAGGAGGCTTCTGAAAAGCTGTCAGCAGGGGCGCGAGGTCCATTGTTCTCCCTCA------GTGAAATCAGAGAGAGAACACATAAAGAGgtaatgtgctgatattgggtttacaggaccccacatttggcttctggtcc Alignment from Pairagon AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gtgcattaggaaattatttacctacttgccgcttctcctttactctgcagaagtttcacaagtgcaacactttag-------------------------GGGGCAGGCCCAAATTCATTCAACATTGCTGTTGGAGGAGGCTTCTGAAAAGCTGTCAGCAGGGGCGCGAGGTCCATTGTTCTCCCTCA------GTGAAATCAGAGAGAGAACACATAAAGAGgtaatgtgctgatattgggtttacaggaccccacatttggcttctggtcc Alignment from Exonerate_protein2genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gtgcattaggaaattatttacctacttgccgcttctcctttactctgcagAAGTTTCACAAGTGCAACACTTTAGGGGGCAGGCCCAAATTCATTCAACATTGCTGTTGGAGGAGGCTTCTGAAAAGCTGTCAGCAGGGGCGCGAGGTCCATTGTTCTCCCTCAGT------GAAATCAGAGAGAGAACACATAAAGAGgtaatgtgctgatattgggtttacaggaccccacatttggcttctggtcc Alignment from Exonerate_coding2genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gtgcattaggaaattatttacctacttgccgcttctcctttactctgcagAAGTTTCACAAGTGCAACACTTTAGGGGGCAGGCCCAAATTCATTCAACATTGCTGTTGGAGGAGGCTTCTGAAAAGCTGTCAGCAGGGGCGCGAGGTCCATTGTTCTCCCTCAGT------GAAATCAGAGAGAGAACACATAAAGAGgtaatgtgctgatattgggtttacaggaccccacatttggcttctggtcc Alignment from GeneWise AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gtgcattaggaaattatttacctacttgccgcttctcctttactctgcagAAGTTTCACAAGTGCAACACTTTAGGGGGCAGGCCCAAATTCATTCAACATTGCTGTTGGAGGAGGCTTCTGAAAAGCTGTCAGCAGGGGCGCGAGGTCCATTGTTCTCCCTCAGT------GAAATCAGAGAGAGAACACATAAAGAGgtaatgtgctgatattgggtttacaggaccccacatttggcttctggtcc #### Sema4g_ID9247_5 --> 0 - 1 Original Alignment GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTg ctccctgaacctgctctcatctcccctgctttcacattgccctctgccagGATTCTGAAACCTTCATCTTGCCTACTAGTTTTGAGGAGGGAAAAGAGGAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCATTATTATTggtaccaacaatgtaaccaatccatcgacaattccaagccctgaacattgt Alignment from CESAR GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTg agacctgaacctgctctcatctcccctgctttcacattgccctctgccagGATTCTGAAACCTTCATCTTGCCTACTAGTTTTGAGGAGGGAAAAGAGGAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCATTATTATTggtaccaacaatgtaaccaatccatcgacaattccaagccctgaacattgt Alignment from Spaln_aa2Genome GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG ctccctgaacctgctctcatctcccctgctttcacattgccctctgccagGATTCTGAAACCTTCATCTTGCCTACTAGTTTTGAGGAGGGAAAAGAGGAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCATTATTATTGgtaccaacaatgtaaccaatccatcgacaattccaagccctgaacattgt Alignment from Spaln_nt2Genome GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG ctccctgaacctgctctcatctcccctgctttcacattgccctctgccagGATTCTGAAACCTTCATCTTGCCTACTAGTTTTGAGGAGGGAAAAGAGGAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCATTATTATTGgtaccaacaatgtaaccaatccatcgacaattccaagccctgaacattgt Alignment from Pairagon GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG ctccctgaacctgctctcatctcccctgctttcacattgccctctgccagGATTCTGAAACCTTCATCTTGCCTACTAGTTTTGAGGAGGGAAAAGAGGAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCATTATTATTGgtaccaacaatgtaaccaatccatcgacaattccaagccctgaacattgt Alignment from Exonerate_protein2genome GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG ctccctgaacctgctctcatctcccctgctttcacattgccctctgccagGATTCTGAAACCTTCATCTTGCCTACTAGTTTTGAGGAGGGAAAAGAGGAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCATTATTATTGgtaccaacaatgtaaccaatccatcgacaattccaagccctgaacattgt Alignment from Exonerate_coding2genome GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG ctccctgaacctgctctcatctcccctgctttcacattgccctctgccagGATTCTGAAACCTTCATCTTGCCTACTAGTTTTGAGGAGGGAAAAGAGGAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCATTATTATTGgtaccaacaatgtaaccaatccatcgacaattccaagccctgaacattgt Alignment from GeneWise GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG ctccctgaacctgctctcatctcccctgctttcacattgccctctgccagGATTCTGAAACCTTCATCTTGCCTACTAGTTTTGAGGAGGGAAAAGAGGAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCATTATTATTGgtaccaacaatgtaaccaatccatcgacaattccaagccctgaacattgt #### Sema4g_ID9249_7 --> 2 - 0 Original Alignment atGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcatattggctcattctgtgaaccaaggactgttctccctctaataaaagacGCAGAATTTGTGTTCTCTGTACTGGTGCGACAGAGTGAAACAAGTACTGTTGGTGGTGAGGACAGGATTTATTTCTTCTTCAAGGAGCATGAGGAGGGTTCCAGTAATTTCACACAAAGTTGCAGCAGCCACAGGGTAGCTAGAGCACCTCGAGTTTGCAAGgtgcagctgatgcacttctagaccagggtaattcaaaaaggccttcagtc Alignment from CESAR atGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcatattggctcattctgtgaaccaaggactgttctccctctaataaaagacGCAGAATTTGTGTTCTCTGTACTGGTGCGACAGAGTGAAACAAGTACTGTTGGTGGTGAGGACAGGATTTATTTCTTCTTCAAGGAGCATGAGGAGGGTTCCAGTAATTTCACACAAAGTTGCAGCAGCCACAGGGTAGCTAGAGCACCTCGAGTTTGCAAGgtgcagctgatgcacttctagaccagggtaattcaaaaaggccttcagtc Alignment from Spaln_aa2Genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcatattggctcattctgtgaaccaaggactgttctccctctaataaaagACGCAGAATTTGTGTTCTCTGTACTGGTGCGACAGAGTGAAACAAGTACTGTTGGTGGTGAGGACAGGATTTATTTCTTCTTCAAGGAGCATGAGGAGGGTTCCAGTAATTTCACACAAAGTTGCAGCAGCCACAGGGTAGCTAGAGCACCTCGAGTTTGCAAGgtgcagctgatgcacttctagaccagggtaattcaaaaaggccttcagtc Alignment from Spaln_nt2Genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcatattggctcattctgtgaaccaaggactgttctccctctaataaaagACGCAGAATTTGTGTTCTCTGTACTGGTGCGACAGAGTGAAACAAGTACTGTTGGTGGTGAGGACAGGATTTATTTCTTCTTCAAGGAGCATGAGGAGGGTTCCAGTAATTTCACACAAAGTTGCAGCAGCCACAGGGTAGCTAGAGCACCTCGAGTTTGCAAGgtgcagctgatgcacttctagaccagggtaattcaaaaaggccttcagtc Alignment from Pairagon ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcatattggctcattctgtgaaccaaggactgttctccctctaataaaagACGCAGAATTTGTGTTCTCTGTACTGGTGCGACAGAGTGAAACAAGTACTGTTGGTGGTGAGGACAGGATTTATTTCTTCTTCAAGGAGCATGAGGAGGGTTCCAGTAATTTCACACAAAGTTGCAGCAGCCACAGGGTAGCTAGAGCACCTCGAGTTTGCAAGgtgcagctgatgcacttctagaccagggtaattcaaaaaggccttcagtc Alignment from Exonerate_protein2genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcatattggctcattctgtgaaccaaggactgttctccctctaataaaagACGCAGAATTTGTGTTCTCTGTACTGGTGCGACAGAGTGAAACAAGTACTGTTGGTGGTGAGGACAGGATTTATTTCTTCTTCAAGGAGCATGAGGAGGGTTCCAGTAATTTCACACAAAGTTGCAGCAGCCACAGGGTAGCTAGAGCACCTCGAGTTTGCAAGgtgcagctgatgcacttctagaccagggtaattcaaaaaggccttcagtc Alignment from Exonerate_coding2genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcatattggctcattctgtgaaccaaggactgttctccctctaataaaagACGCAGAATTTGTGTTCTCTGTACTGGTGCGACAGAGTGAAACAAGTACTGTTGGTGGTGAGGACAGGATTTATTTCTTCTTCAAGGAGCATGAGGAGGGTTCCAGTAATTTCACACAAAGTTGCAGCAGCCACAGGGTAGCTAGAGCACCTCGAGTTTGCAAGgtgcagctgatgcacttctagaccagggtaattcaaaaaggccttcagtc Alignment from GeneWise ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcatattggctcattctgtgaaccaaggactgttctccctctaataaaagACGCAGAATTTGTGTTCTCTGTACTGGTGCGACAGAGTGAAACAAGTACTGTTGGTGGTGAGGACAGGATTTATTTCTTCTTCAAGGAGCATGAGGAGGGTTCCAGTAATTTCACACAAAGTTGCAGCAGCCACAGGGTAGCTAGAGCACCTCGAGTTTGCAAGgtgcagctgatgcacttctagaccagggtaattcaaaaaggccttcagtc #### Sema4g_ID9255_13 --> 1 - 1 Original Alignment gACAGAATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAg gtcaccaactggtagtagtattgtaataatggtcctaactctgtcttcagaACAGAACTAATACAAGACATTGAAAGAGGAAATCGAGGCTGTGAGGACAGCCGGGATGCTggtattcagaactgatacctcacttggattctaggccatttgaggttagac Alignment from CESAR gACAGAATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAg gtcaccaactggtagtagtattgtaataatggtcctaactctgtcttcagaACAGAACTAATACAAGACATTGAAAGAGGAAATCGAGGCTGTGAGGACAGCCGGGATGCTggtattcagaactgatacctcacttggattctaggccatttgaggttagac Alignment from Spaln_aa2Genome GACAGAATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAG gtcaccaactggtagtagtattgtaataatggtcctaactctgtcttcagAACAGAACTAATACAAGACATTGAAAGAGGAAATCGAGGCTGTGAGGACAGCCGGGATGCTGgtattcagaactgatacctcacttggattctaggccatttgaggttagac Alignment from Spaln_nt2Genome GACAGAATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAG gtcaccaactggtagtagtattgtaataatggtcctaactctgtcttcagAACAGAACTAATACAAGACATTGAAAGAGGAAATCGAGGCTGTGAGGACAGCCGGGATGCTGgtattcagaactgatacctcacttggattctaggccatttgaggttagac Alignment from Pairagon GACAGAATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAG gtcaccaactggtagtagtattgtaataatggtcctaactctgtcttcagAACAGAACTAATACAAGACATTGAAAGAGGAAATCGAGGCTGTGAGGACAGCCGGGATGCTGgtattcagaactgatacctcacttggattctaggccatttgaggttagac Alignment from Exonerate_protein2genome GACAGAATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAG gtcaccaactggtagtagtattgtaataatggtcctaactctgtcttcagAACAGAACTAATACAAGACATTGAAAGAGGAAATCGAGGCTGTGAGGACAGCCGGGATGCTGgtattcagaactgatacctcacttggattctaggccatttgaggttagac Alignment from Exonerate_coding2genome GACAGAATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAG gtcaccaactggtagtagtattgtaataatggtcctaactctgtcttcagAACAGAACTAATACAAGACATTGAAAGAGGAAATCGAGGCTGTGAGGACAGCCGGGATGCTGgtattcagaactgatacctcacttggattctaggccatttgaggttagac Alignment from GeneWise GACAGAATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAG gtcaccaactggtagtagtattgtaataatggtcctaactctgtcttcagAACAGAACTAATACAAGACATTGAAAGAGGAAATCGAGGCTGTGAGGACAGCCGGGATGCTGgtattcagaactgatacctcacttggattctaggccatttgaggttagac #### Sf1_ID1664_5 --> 1 - 2 Original Alignment gCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCag tctagaaaaatttggacaaaagataggtaactcttccttctcctccccaggCCTCCAGCAATGCGTGTGAGTGATAAAGTGATGATACCACAGTATGAATATCCGGAAATTAATTTTGTGGGCCTTCTCATTGGTCCTaggtgagtagttagtggtttgtagactaaagtgtcccttgtaggtcaagatt Alignment from CESAR gCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCag tctagaaaaatttggacaaaagataggtaactcttccttctcctccccaggCCTCCAGCAATGCGTGTGAGTGATAAAGTGATGATACCACAGTATGAATATCCGGAAATTAATTTTGTGGGCCTTCTCATTGGTCCTaggtgagtagttagtggtttgtagactaaagtgtcccttgtaggtcaagatt Alignment from Spaln_aa2Genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG tctagaaaaatttggacaaaagataggtaactcttccttctcctccccagGCCTCCAGCAATGCGTGTGAGTGATAAAGTGATGATACCACAGTATGAATATCCGGAAATTAATTTTGTGGGCCTTCTCATTGGTCCTAGgtgagtagttagtggtttgtagactaaagtgtcccttgtaggtcaagatt Alignment from Spaln_nt2Genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG tctagaaaaatttggacaaaagataggtaactcttccttctcctccccagGCCTCCAGCAATGCGTGTGAGTGATAAAGTGATGATACCACAGTATGAATATCCGGAAATTAATTTTGTGGGCCTTCTCATTGGTCCTAGgtgagtagttagtggtttgtagactaaagtgtcccttgtaggtcaagatt Alignment from Pairagon GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG tctagaaaaatttggacaaaagataggtaactcttccttctcctccccagGCCTCCAGCAATGCGTGTGAGTGATAAAGTGATGATACCACAGTATGAATATCCGGAAATTAATTTTGTGGGCCTTCTCATTGGTCCTAGgtgagtagttagtggtttgtagactaaagtgtcccttgtaggtcaagatt Alignment from Exonerate_protein2genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG tctagaaaaatttggacaaaagataggtaactcttccttctcctccccagGCCTCCAGCAATGCGTGTGAGTGATAAAGTGATGATACCACAGTATGAATATCCGGAAATTAATTTTGTGGGCCTTCTCATTGGTCCTAGgtgagtagttagtggtttgtagactaaagtgtcccttgtaggtcaagatt Alignment from Exonerate_coding2genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG tctagaaaaatttggacaaaagataggtaactcttccttctcctccccagGCCTCCAGCAATGCGTGTGAGTGATAAAGTGATGATACCACAGTATGAATATCCGGAAATTAATTTTGTGGGCCTTCTCATTGGTCCTAGgtgagtagttagtggtttgtagactaaagtgtcccttgtaggtcaagatt Alignment from GeneWise GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG tctagaaaaatttggacaaaagataggtaactcttccttctcctccccagGCCTCCAGCAATGCGTGTGAGTGATAAAGTGATGATACCACAGTATGAATATCCGGAAATTAATTTTGTGGGCCTTCTCATTGGTCCTAGgtgagtagttagtggtttgtagactaaagtgtcccttgtaggtcaagatt #### Sf1_ID1665_6 --> 1 - 0 Original Alignment aGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATCATGATTCGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG ccagtcagagtaactgaacaggagtgatagattattttcctctgaaacagaGGGAACACACTGAAGAACATTGATAAGGACTGCAATGCAAAGATCATGATTCGGGGGAAAGGATCCGTGAAAGAGGGGAAAGTTGGACGTAAAGATGGACAGATGTTGCCAGGTGAAGATGAGCCTCTTCATGCTCTAGTCACAGCCAATACAATGGAGAATGTCAAAAAGGCAGTAGAACAGgtaggtgttcagcctaggaaacctggcaatctacttacagtagggtgagt Alignment from CESAR aGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATCATGATTCGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG ccagtcagagtaactgaacaggagtgatagattattttcctctgaaacagaGGGAACACACTGAAGAACATTGATAAGGACTGCAATGCAAAGATCATGATTCGGGGGAAAGGATCCGTGAAAGAGGGGAAAGTTGGACGTAAAGATGGACAGATGTTGCCAGGTGAAGATGAGCCTCTTCATGCTCTAGTCACAGCCAATACAATGGAGAATGTCAAAAAGGCAGTAGAACAGgtaggtgttcagcctaggaaacctggcaatctacttacagtagggtgagt Alignment from Spaln_aa2Genome AGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATCATGATTCGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG ccagtcagagtaactgaacaggagtgatagattattttcctctgaaacagAGGGAACACACTGAAGAACATTGATAAGGACTGCAATGCAAAGATCATGATTCGGGGGAAAGGATCCGTGAAAGAGGGGAAAGTTGGACGTAAAGATGGACAGATGTTGCCAGGTGAAGATGAGCCTCTTCATGCTCTAGTCACAGCCAATACAATGGAGAATGTCAAAAAGGCAGTAGAACAGgtaggtgttcagcctaggaaacctggcaatctacttacagtagggtgagt Alignment from Spaln_nt2Genome AGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATCATGATTCGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG ccagtcagagtaactgaacaggagtgatagattattttcctctgaaacagAGGGAACACACTGAAGAACATTGATAAGGACTGCAATGCAAAGATCATGATTCGGGGGAAAGGATCCGTGAAAGAGGGGAAAGTTGGACGTAAAGATGGACAGATGTTGCCAGGTGAAGATGAGCCTCTTCATGCTCTAGTCACAGCCAATACAATGGAGAATGTCAAAAAGGCAGTAGAACAGgtaggtgttcagcctaggaaacctggcaatctacttacagtagggtgagt Alignment from Pairagon AGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATCATGATTCGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG ccagtcagagtaactgaacaggagtgatagattattttcctctgaaacagAGGGAACACACTGAAGAACATTGATAAGGACTGCAATGCAAAGATCATGATTCGGGGGAAAGGATCCGTGAAAGAGGGGAAAGTTGGACGTAAAGATGGACAGATGTTGCCAGGTGAAGATGAGCCTCTTCATGCTCTAGTCACAGCCAATACAATGGAGAATGTCAAAAAGGCAGTAGAACAGgtaggtgttcagcctaggaaacctggcaatctacttacagtagggtgagt Alignment from Exonerate_protein2genome AGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATCATGATTCGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG ccagtcagagtaactgaacaggagtgatagattattttcctctgaaacagAGGGAACACACTGAAGAACATTGATAAGGACTGCAATGCAAAGATCATGATTCGGGGGAAAGGATCCGTGAAAGAGGGGAAAGTTGGACGTAAAGATGGACAGATGTTGCCAGGTGAAGATGAGCCTCTTCATGCTCTAGTCACAGCCAATACAATGGAGAATGTCAAAAAGGCAGTAGAACAGgtaggtgttcagcctaggaaacctggcaatctacttacagtagggtgagt Alignment from Exonerate_coding2genome AGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATCATGATTCGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG ccagtcagagtaactgaacaggagtgatagattattttcctctgaaacagAGGGAACACACTGAAGAACATTGATAAGGACTGCAATGCAAAGATCATGATTCGGGGGAAAGGATCCGTGAAAGAGGGGAAAGTTGGACGTAAAGATGGACAGATGTTGCCAGGTGAAGATGAGCCTCTTCATGCTCTAGTCACAGCCAATACAATGGAGAATGTCAAAAAGGCAGTAGAACAGgtaggtgttcagcctaggaaacctggcaatctacttacagtagggtgagt Alignment from GeneWise AGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATCATGATTCGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG ccagtcagagtaactgaacaggagtgatagattattttcctctgaaacagAGGGAACACACTGAAGAACATTGATAAGGACTGCAATGCAAAGATCATGATTCGGGGGAAAGGATCCGTGAAAGAGGGGAAAGTTGGACGTAAAGATGGACAGATGTTGCCAGGTGAAGATGAGCCTCTTCATGCTCTAGTCACAGCCAATACAATGGAGAATGTCAAAAAGGCAGTAGAACAGgtaggtgttcagcctaggaaacctggcaatctacttacagtagggtgagt #### Sf1_ID1667_8 --> 1 - 2 Original Alignment gATCTTAAGGCCCTGGCAGAGCTCAGAGACGCGCAGCATTACCAATACTACTGTGTGTACCAAGTGTGGAGGGGCTGGTCACATTGCTTCTGATTGCAAATTTCAGag gtttaagttaccgaaggatcatggagtgctgtgatttttgtgttccgtagaATCTTGAGGCCCTGGCAAAGCTCAGAGACCCGGACTATTACCAATTCTACTGTGTGTACCAAATGTGGAGGAGCCGGTCACATAGCCTCTGATTGCAAAGTTCAGaggtactgccaaccgagaagacctggctactacagaagttgatagcctatgt Alignment from CESAR gATCTTAAGGCCCTGGCAGAGCTCAGAGACGCGCAGCATTACCAATACTACTGTGTGTACCAAGTGTGGAGGGGCTGGTCACATTGCTTCTGATTGCAAATTTCAGag gtttaagttaccgaaggatcatggagtgctgtgatttttgtgttccgtagaATCTTGAGGCCCTGGCAAAGCTCAGAGACCCGGACTATTACCAATTCTACTGTGTGTACCAAATGTGGAGGAGCCGGTCACATAGCCTCTGATTGCAAAGTTCAGaggtactgccaaccgagaagacctggctactacagaagttgatagcctatgt Alignment from Spaln_aa2Genome GATCTTAAGGCCCTGGCAGAGCTCAGAGACGCGCAGCATTACCAATACTACTGTGTGTACCAAGTGTGGAGGGGCTGGTCACATTGCTTCTGATTGCAAATTTCAGAG gtttaagttaccgaaggatcatggagtgctgtgatttttgtgttccgtagAATCTTGAGGCCCTGGCAAAGCTCAGAGACCCGGACTATTACCAATTCTACTGTGTGTACCAAATGTGGAGGAGCCGGTCACATAGCCTCTGATTGCAAAGTTCAGAGgtactgccaaccgagaagacctggctactacagaagttgatagcctatgt Alignment from Spaln_nt2Genome GATCTTAAGGCCCTGGCAGAGCTCAGAGACGCGCAGCATTACCAATACTACTGTGTGTACCAAGTGTGGAGGGGCTGGTCACATTGCTTCTGATTGCAAATTTCAGAG gtttaagttaccgaaggatcatggagtgctgtgatttttgtgttccgtagAATCTTGAGGCCCTGGCAAAGCTCAGAGACCCGGACTATTACCAATTCTACTGTGTGTACCAAATGTGGAGGAGCCGGTCACATAGCCTCTGATTGCAAAGTTCAGAGgtactgccaaccgagaagacctggctactacagaagttgatagcctatgt Alignment from Pairagon -----------------------------------------------TAGGATCTTAAGGCCCTGGCAGAGCTCAGAGACGCGCAGCATTACCAATACTACTGTGTGTACCAAGTGTGGAGGGGCTGGTCACATTGCTTCTGATTGCAAATTTCAGAG GTTTAAGTTACCGAAGGATCATGGAGTGCTGTGATTTTTGTGTTCCGTAGAATCTTGAGGCCCTGGCAAAGCTCAGAGACCCGGACTATTACCAATTCTACTGTGTGTACCAAATGTGGAGGAGCCGGTCACATAGCCTCTGATTGCAAAGTTCAGAGgtactgccaaccgagaagacctggctactacagaagttgatagcctatgt Alignment from Exonerate_protein2genome TAGGATCTTAAGGCCCTGGCAGAGCTCAGAGACGCGCAGCATTACCAATACTACTGTGTGTACCAAGTGTGGAGGGGCTGGTCACATTGCTTCTGATTGCAAATTTCAGAG gtttaagttaccgaaggatcatggagtgctgtgatttttgtgttccgTAGAATCTTGAGGCCCTGGCAAAGCTCAGAGACCCGGACTATTACCAATTCTACTGTGTGTACCAAATGTGGAGGAGCCGGTCACATAGCCTCTGATTGCAAAGTTCAGAGgtactgccaaccgagaagacctggctactacagaagttgatagcctatgt Alignment from Exonerate_coding2genome TAGGATCTTAAGGCCCTGGCAGAGCTCAGAGACGCGCAGCATTACCAATACTACTGTGTGTACCAAGTGTGGAGGGGCTGGTCACATTGCTTCTGATTGCAAATTTCAGAG gtttaagttaccgaaggatcatggagtgctgtgatttttgtgttccgTAGAATCTTGAGGCCCTGGCAAAGCTCAGAGACCCGGACTATTACCAATTCTACTGTGTGTACCAAATGTGGAGGAGCCGGTCACATAGCCTCTGATTGCAAAGTTCAGAGgtactgccaaccgagaagacctggctactacagaagttgatagcctatgt Alignment from GeneWise -------------------AATAGGATCTTAAGGCCCTGGCAGAGCTCAGAGACGCGCAGCATTACCAATACTACTGTGTGTACCAAGTGTGGAGGGGCTGGTCACATTGCTTCTGATTGCAAATTTCAGAG gtttaagttaccgaaggatcatggagTGCTGTGATTTTTGTGTTCCGTAGAATCTTGAGGCCCTGGCAAAGCTCAGAGACCCGGACTATTACCAATTCTACTGTGTGTACCAAATGTGGAGGAGCCGGTCACATAGCCTCTGATTGCAAAGTTCAGAGgtactgccaaccgagaagacctggctactacagaagttgatagcctatgt #### Sf3b2_ID899_19 --> 1 - 0 Original Alignment aAGTGAGACACCTCAGTTATTCACTGTATTGCCAGAGAAGAGAACAGCCACTGTTGGGGGAGCCATGATGGGATCCACCCACATTTATGACATGTCCACG tcttggagttgaagtatcatcctttggttctctttcacccccaattccaggAGTGAAACACCACAGTTATTCACTGTATTGCCAGAGAAGAGAACTGCAACTGTTGGTGGG------ATGGGATCAACTCACATATACGATATGTCCACTgtgaggaatggaaaaacccctattcagaccgggtgggattgggccctgat Alignment from CESAR aAGTGAGACACCTCAGTTATTCACTGTATTGCCAGAGAAGAGAACAGCCACTGTTGGGGGAGCCATGATGGGATCCACCCACATTTATGACATGTCCACG tcttggagttgaagtatcatcctttggttctctttcacccccaattccaggAGTGAAACACCACAGTTATTCACTGTATTGCCAGAGAAGAGAACTGCAACTGTTGGTGGG------ATGGGATCAACTCACATATACGATATGTCCACTgtgaggaatggaaaaacccctattcagaccgggtgggattgggccctgat Alignment from Spaln_aa2Genome AAGTGAGACACCTCAGTTATTCACTGTATTGCCAGAGAAGAGAACAGCCACTGTTGGGGGAGCCATGATGGGATCCACCCACATTTATGACATGTCCACG tcttggagttgaagtatcatcctttggttctctttcacccccaattccagGAGTGAAACACCACAGTTATTCACTGTATTGCCAGAGAAGAGAACTGCAACTGTTGGTGGG------ATGGGATCAACTCACATATACGATATGTCCACTgtgaggaatggaaaaacccctattcagaccgggtgggattgggccctgat Alignment from Spaln_nt2Genome AAGTGAGACACCTCAGTTATTCACTGTATTGCCAGAGAAGAGAACAGCCACTGTTGGGGGAGCCATGATGGGATCCACCCACATTTATGACATGTCCACG tcttggagttgaagtatcatcctttggttctctttcacccccaattccagGAGTGAAACACCACAGTTATTCACTGTATTGCCAGAGAAGAGAACTGCAACTGTTGGTGG------GATGGGATCAACTCACATATACGATATGTCCACTgtgaggaatggaaaaacccctattcagaccgggtgggattgggccctgat Alignment from Pairagon AAGTGAGACACCTCAGTTATTCACTGTATTGCCAGAGAAGAGAACAGCCACTGTTGGGGGAGCCATGATGGGATCCACCCACATTTATGACATGTCCACG tcttggagttgaagtatcatcctttggttctctttcacccccaattccagGAGTGAAACACCACAGTTATTCACTGTATTGCCAGAGAAGAGAACTGCAACTGTTGGTGG------GATGGGATCAACTCACATATACGATATGTCCACTgtgaggaatggaaaaacccctattcagaccgggtgggattgggccctgat Alignment from Exonerate_protein2genome AAGTGAGACACCTCAGTTATTCACTGTATTGCCAGAGAAGAGAACAGCCACTGTTGGGGGAGCCATGATGGGATCCACCCACATTTATGACATGTCCACG tcttggagttgaagtatcatcctttggttctctttcacccccaattccagGAGTGAAACACCACAGTTATTCACTGTATTGCCAGAGAAGAGAACTGCAACTGTTGGTGGG------ATGGGATCAACTCACATATACGATATGTCCACTgtgaggaatggaaaaacccctattcagaccgggtgggattgggccctgat Alignment from Exonerate_coding2genome AAGTGAGACACCTCAGTTATTCACTGTATTGCCAGAGAAGAGAACAGCCACTGTTGGGGGAGCCATGATGGGATCCACCCACATTTATGACATGTCCACG tcttggagttgaagtatcatcctttggttctctttcacccccaattccagGAGTGAAACACCACAGTTATTCACTGTATTGCCAGAGAAGAGAACTGCAACTGTTGGTGGG------ATGGGATCAACTCACATATACGATATGTCCACTgtgaggaatggaaaaacccctattcagaccgggtgggattgggccctgat Alignment from GeneWise AAGTGAGACACCTCAGTTATTCACTGTATTGCCAGAGAAGAGAACAGCCACTGTTGGGGGAGCCATGATGGGATCCACCCACATTTATGACATGTCCACG tcttggagttgaagtatcatcctttggttctctttcacccccaattccagGAGTGAAACACCACAGTTATTCACTGTATTGCCAGAGAAGAGAACTGCAACTGTTGGTGGG------ATGGGATCAACTCACATATACGATATGTCCACTgtgaggaatggaaaaacccctattcagaccgggtgggattgggccctgat #### Sf3b2_ID909_9 --> 0 - 0 Original Alignment AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG tacacaatcccttagagtgtacagagcctgtttgtttttttcctattcagAAAAACCAACAACATCAAAATCGGAAGAAGAAAAAAAAACCAAAGCAGGTGAGGGCAGCCTCATCAAAGAGCTCTGGGGATAGAGAAAAAGACTCTGGTCAATCTGAAGGGTCAGGTCCGCCGACAGGA---ATAGAGATTAAGTATGTGAGTGAGGAGCCTGAGATCTATGAGCCCAATTTCATCTTCTTCAAGAGGGTGTATGAGGCTTTTAAGgtgagctggctcatgcctcttctgaggaccttacaggttaaggcacaaac Alignment from CESAR AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG tacacaatcccttagagtgtacagagcctgtttgtttttttcctattcagAAAAACCAACAACATCAAAATCGGAAGAAGAAAAAAAAACCAAAGCAGGTGAGGGCAGCCTCATCAAAGAGCTCTGGGGATAGAGAAAAAGACTCTGGTCAATCTGAAGGGTCAGGTCCGCCGACAGGA---ATAGAGATTAAGTATGTGAGTGAGGAGCCTGAGATCTATGAGCCCAATTTCATCTTCTTCAAGAGGGTGTATGAGGCTTTTAAGgtgagctggctcatgcctcttctgaggaccttacaggttaaggcacaaac Alignment from Spaln_aa2Genome AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG tacacaatcccttagagtgtacagagcctgtttgtttttttcctattcagAAAAACCAACAACATCAAAATCGGAAGAAGAAAAAAAAACCAAAGCAGGTGAGGGCAGCCTCATCAAAGAGCTCTGGGGATAGAGAAAAAGACTCTGGTCAATCTGAAGGGTCAGGTCCGCCGACAGGA---ATAGAGATTAAGTATGTGAGTGAGGAGCCTGAGATCTATGAGCCCAATTTCATCTTCTTCAAGAGGGTGTATGAGGCTTTTAAGgtgagctggctcatgcctcttctgaggaccttacaggttaaggcacaaac Alignment from Spaln_nt2Genome AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG tacacaatcccttagagtgtacagagcctgtttgtttttttcctattcagAAAAACCAACAACATCAAAATCGGAAGAAGAAAAAAAAACCAAAGCAGGTGAGGGCAGCCTCATCAAAGAGCTCTGGGGATAGAGAAAAAGACTCTGGTCAATCTGAAGGGTCAGGTCCGCCGACAG--GA-ATAGAGATTAAGTATGTGAGTGAGGAGCCTGAGATCTATGAGCCCAATTTCATCTTCTTCAAGAGGGTGTATGAGGCTTTTAAGgtgagctggctcatgcctcttctgaggaccttacaggttaaggcacaaac Alignment from Pairagon AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTC--------------GGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTG----GAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG tacacaatcccttagagtgtacagagcctgtttgtttttttcctattcagAAAAACCAACAACATCAAAATCGGAAGAAGAAAAAAAAACCAAAGCAGGTGAGGGCAGCCTCATCAAAGAGCTCTGGGGATAGAGAAAAAGACTCTGGTCAATCTGAAGGGTCAGGTCC---------------------GCCGACAGGAATAGAGATTAAGTATGTGAGTGAGGAGCCTGAGATCTATGAGCCCAATTTCATCTTCTTCAAGAGGGTGTATGAGGCTTTTAAGgtgagctggctcatgcctcttctgaggaccttacaggttaaggcacaaac Alignment from Exonerate_protein2genome AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG tacacaatcccttagagtgtacagagcctgtttgtttttttcctattcagAAAAACCAACAACATCAAAATCGGAAGAAGAAAAAAAAACCAAAGCAGGTGAGGGCAGCCTCATCAAAGAGCTCTGGGGATAGAGAAAAAGACTCTGGTCAATCTGAAGGGTCAGGTCCGCCGACAGGA---ATAGAGATTAAGTATGTGAGTGAGGAGCCTGAGATCTATGAGCCCAATTTCATCTTCTTCAAGAGGGTGTATGAGGCTTTTAAGgtgagctggctcatgcctcttctgaggaccttacaggttaaggcacaaac Alignment from Exonerate_coding2genome AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG tacacaatcccttagagtgtacagagcctgtttgtttttttcctattcagAAAAACCAACAACATCAAAATCGGAAGAAGAAAAAAAAACCAAAGCAGGTGAGGGCAGCCTCATCAAAGAGCTCTGGGGATAGAGAAAAAGACTCTGGTCAATCTGAAGGGTCAGGTCCGCCGACAGGA---ATAGAGATTAAGTATGTGAGTGAGGAGCCTGAGATCTATGAGCCCAATTTCATCTTCTTCAAGAGGGTGTATGAGGCTTTTAAGgtgagctggctcatgcctcttctgaggaccttacaggttaaggcacaaac Alignment from GeneWise AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG tacacaatcccttagagtgtacagagcctgtttgtttttttcctattcagAAAAACCAACAACATCAAAATCGGAAGAAGAAAAAAAAACCAAAGCAGGTGAGGGCAGCCTCATCAAAGAGCTCTGGGGATAGAGAAAAAGACTCTGGTCAATCTGAAGGGTCAGGTCCGCCGACAGGA---ATAGAGATTAAGTATGTGAGTGAGGAGCCTGAGATCTATGAGCCCAATTTCATCTTCTTCAAGAGGGTGTATGAGGCTTTTAAGgtgagctggctcatgcctcttctgaggaccttacaggttaaggcacaaac #### Sf3b2_ID910_8 --> 2 - 0 Original Alignment agGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG tgcagcaagttgtggttaattatggccaaggagaaatgtgtcatttacagaaAAAGCAGAAATGGAGACAGTTACTCGCTCATCTCTGGGACCATCTGCATCTGAGACTGAGGAAGACACAGTGTCCATATCTAAAATAGAGgtatggatttatgaagttgggggccacttttctgtgagcttcttacattc Alignment from CESAR agGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG tgcagcaagttgtggttaattatggccaaggagaaatgtgtcatttacagaaAAAGCAGAAATGGAGACAGTTACTCGCTCATCTCTGGGACCATCTGCATCTGAGACTGAGGAAGACACAGTGTCCATATCTAAAATAGAGgtatggatttatgaagttgggggccacttttctgtgagcttcttacattc Alignment from Spaln_aa2Genome AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG tgcagcaagttgtggttaattatggccaaggagaaatgtgtcatttacagAAAAAGCAGAAATGGAGACAGTTACTCGCTCATCTCTGGGACCATCTGCATCTGAGACTGAGGAAGACACAGTGTCCATATCTAAAATAGAGgtatggatttatgaagttgggggccacttttctgtgagcttcttacattc Alignment from Spaln_nt2Genome AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG tgcagcaagttgtggttaattatggccaaggagaaatgtgtcatttacagAAAAAGCAGAAATGGAGACAGTTACTCGCTCATCTCTGGGACCATCTGCATCTGAGACTGAGGAAGACACAGTGTCCATATCTAAAATAGAGgtatggatttatgaagttgggggccacttttctgtgagcttcttacattc Alignment from Pairagon AAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG tgcagcaagttgtggttaattatggccaaggagaaatgtgtcatttacagaaaaagcagAAATGGAGACAGTTACTCGCTCATCTCTGGGACCATCTGCATCTGAGACTGAGGAAGACACAGTGTCCATATCTAAAATAGAGgtatggatttatgaagttgggggccacttttctgtgagcttcttacattc Alignment from Exonerate_protein2genome AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG tgcagcaagttgtggttaattatggccaaggagaaatgtgtcatttacagAAAAAGCAGAAATGGAGACAGTTACTCGCTCATCTCTGGGACCATCTGCATCTGAGACTGAGGAAGACACAGTGTCCATATCTAAAATAGAGgtatggatttatgaagttgggggccacttttctgtgagcttcttacattc Alignment from Exonerate_coding2genome AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG tgcagcaagttgtggttaattatggccaaggagaaatgtgtcatttacagAAAAAGCAGAAATGGAGACAGTTACTCGCTCATCTCTGGGACCATCTGCATCTGAGACTGAGGAAGACACAGTGTCCATATCTAAAATAGAGgtatggatttatgaagttgggggccacttttctgtgagcttcttacattc Alignment from GeneWise ----------------GAGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG tgcagcaagttgtggttaattatggccaaggagAAATGTGTCATTTACAGAAAAAGCAGAAATGGAGACAGTTACTCGCTCATCTCTGGGACCATCTGCATCTGAGACTGAGGAAGACACAGTGTCCATATCTAAAATAGAGgtatggatttatgaagttgggggccacttttctgtgagcttcttacattc #### Sf3b2_ID912_6 --> 2 - 0 Original Alignment taGCTGCTCCAGTAGGCCCTGTGGTTCCCACGCCTACGGTTTTGCCCATGGGGGCACCTGTTCCTCGCCCTCGGGGTCCCCCCCCACCCCCTGGAGATGAGAACAGAGAG aatgattccagagggaaagttaactgaccattccctggatttccccacagtgGCTGCTCCAGTAGGCCCTGTGGTTCCTGCGCCTGCAGTTTTACCCATGGGGGCACCCGTACCTCGCCCCCAGGGTTCCCCTCCACCCCCAGGAGATGAGAACAGGGAGgtgagtacttaccaatctgttcccacaggctttatctacgccctagctga Alignment from CESAR taGCTGCTCCAGTAGGCCCTGTGGTTCCCACGCCTACGGTTTTGCCCATGGGGGCACCTGTTCCTCGCCCTCGGGGTCCCCCCCCACCCCCTGGAGATGAGAACAGAGAG aatgattccagagggaaagttaactgaccattccctggatttccccacagtgGCTGCTCCAGTAGGCCCTGTGGTTCCTGCGCCTGCAGTTTTACCCATGGGGGCACCCGTACCTCGCCCCCAGGGTTCCCCTCCACCCCCAGGAGATGAGAACAGGGAGgtgagtacttaccaatctgttcccacaggctttatctacgccctagctga Alignment from Spaln_aa2Genome TAGCTGCTCCAGTAGGCCCTGTGGTTCCCACGCCTACGGTTTTGCCCATGGGGGCACCTGTTCCTCGCCCTCGGGGTCCCCCCCCACCCCCTGGAGATGAGAACAGAGAG aatgattccagagggaaagttaactgaccattccctggatttccccacagTGGCTGCTCCAGTAGGCCCTGTGGTTCCTGCGCCTGCAGTTTTACCCATGGGGGCACCCGTACCTCGCCCCCAGGGTTCCCCTCCACCCCCAGGAGATGAGAACAGGGAGgtgagtacttaccaatctgttcccacaggctttatctacgccctagctga Alignment from Spaln_nt2Genome TAGCTGCTCCAGTAGGCCCTGTGGTTCCCACGCCTACGGTTTTGCCCATGGGGGCACCTGTTCCTCGCCCTCGGGGTCCCCCCCCACCCCCTGGAGATGAGAACAGAGAG aatgattccagagggaaagttaactgaccattccctggatttccccacagTGGCTGCTCCAGTAGGCCCTGTGGTTCCTGCGCCTGCAGTTTTACCCATGGGGGCACCCGTACCTCGCCCCCAGGGTTCCCCTCCACCCCCAGGAGATGAGAACAGGGAGgtgagtacttaccaatctgttcccacaggctttatctacgccctagctga Alignment from Pairagon TAGCTGCTCCAGTAGGCCCTGTGGTTCCCACGCCTACGGTTTTGCCCATGGGGGCACCTGTTCCTCGCCCTCGGGGTCCCCCCCCACCCCCTGGAGATGAGAACAGAGAG aatgattccagagggaaagttaactgaccattccctggatttccccacagTGGCTGCTCCAGTAGGCCCTGTGGTTCCTGCGCCTGCAGTTTTACCCATGGGGGCACCCGTACCTCGCCCCCAGGGTTCCCCTCCACCCCCAGGAGATGAGAACAGGGAGgtgagtacttaccaatctgttcccacaggctttatctacgccctagctga Alignment from Exonerate_protein2genome TAGCTGCTCCAGTAGGCCCTGTGGTTCCCACGCCTACGGTTTTGCCCATGGGGGCACCTGTTCCTCGCCCTCGGGGTCCCCCCCCACCCCCTGGAGATGAGAACAGAGAG aatgattccagagggaaagttaactgaccattccctggatttccccacagTGGCTGCTCCAGTAGGCCCTGTGGTTCCTGCGCCTGCAGTTTTACCCATGGGGGCACCCGTACCTCGCCCCCAGGGTTCCCCTCCACCCCCAGGAGATGAGAACAGGGAGgtgagtacttaccaatctgttcccacaggctttatctacgccctagctga Alignment from Exonerate_coding2genome TAGCTGCTCCAGTAGGCCCTGTGGTTCCCACGCCTACGGTTTTGCCCATGGGGGCACCTGTTCCTCGCCCTCGGGGTCCCCCCCCACCCCCTGGAGATGAGAACAGAGAG aatgattccagagggaaagttaactgaccattccctggatttccccacagTGGCTGCTCCAGTAGGCCCTGTGGTTCCTGCGCCTGCAGTTTTACCCATGGGGGCACCCGTACCTCGCCCCCAGGGTTCCCCTCCACCCCCAGGAGATGAGAACAGGGAGgtgagtacttaccaatctgttcccacaggctttatctacgccctagctga Alignment from GeneWise TAGCTGCTCCAGTAGGCCCTGTGGTTCCCACGCCTACGGTTTTGCCCATGGGGGCACCTGTTCCTCGCCCTCGGGGTCCCCCCCCACCCCCTGGAGATGAGAACAGAGAG aatgattccagagggaaagttaactgaccattccctggatttccccacagTGGCTGCTCCAGTAGGCCCTGTGGTTCCTGCGCCTGCAGTTTTACCCATGGGGGCACCCGTACCTCGCCCCCAGGGTTCCCCTCCACCCCCAGGAGATGAGAACAGGGAGgtgagtacttaccaatctgttcccacaggctttatctacgccctagctga #### Sfxn2_ID9969_7 --> 0 - 1 Original Alignment AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCT---GGCATGa cctggccatcagaagcatcatccctggttttttgttgttgttgtttttagAGAGCAGCGACTGTGACCATCACACAAGTGGTTATCTCTCGTATTTCAATGGCAGCGCCTGCTGGCATGagtaaggtttagaaagctagaactgggtcccctcccttatacaaaaattaa Alignment from CESAR AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCT---GGCATGa cctggccatcagaagcatcatccctggttttttgttgttgttgtttttagAGAGCAGCGACTGTGACCATCACACAAGTGGTTATCTCTCGTATTTCAATGGCAGCGCCTGCTGGCATGagtaaggtttagaaagctagaactgggtcccctcccttatacaaaaattaa Alignment from Spaln_aa2Genome AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCT---GGCATGA cctggccatcagaagcatcatccctggttttttgttgttgttgtttttagAGAGCAGCGACTGTGACCATCACACAAGTGGTTATCTCTCGTATTTCAATGGCAGCGCCTGCTGGCATGAgtaaggtttagaaagctagaactgggtcccctcccttatacaaaaattaa Alignment from Spaln_nt2Genome AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCTG---GCATGA cctggccatcagaagcatcatccctggttttttgttgttgttgtttttagAGAGCAGCGACTGTGACCATCACACAAGTGGTTATCTCTCGTATTTCAATGGCAGCGCCTGCTGGCATGAgtaaggtttagaaagctagaactgggtcccctcccttatacaaaaattaa Alignment from Pairagon AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCC---CTGGCATGA cctggccatcagaagcatcatccctggttttttgttgttgttgtttttagAGAGCAGCGACTGTGACCATCACACAAGTGGTTATCTCTCGTATTTCAATGGCAGCGCCTGCTGGCATGAgtaaggtttagaaagctagaactgggtcccctcccttatacaaaaattaa Alignment from Exonerate_protein2genome AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCT---GGCATGA cctggccatcagaagcatcatccctggttttttgttgttgttgtttttagAGAGCAGCGACTGTGACCATCACACAAGTGGTTATCTCTCGTATTTCAATGGCAGCGCCTGCTGGCATGAgtaaggtttagaaagctagaactgggtcccctcccttatacaaaaattaa Alignment from Exonerate_coding2genome cctggccatcagaagcatcatccctggttttttgttgttgttgtttttagagagcagcgactgtgaccatcacacaagtggttatctctcgtatttcaatggcagcgcctgctggcatgagtaaggtttagaaagctagaactgggtcccctcccttatacaaaaattaa Alignment from GeneWise cctggccatcagaagcatcatccctggttttttgttgttgttgtttttagagagcagcgactgtgaccatcacacaagtggttatctctcgtatttcaatggcagcgcctgctggcatgagtaaggtttagaaagctagaactgggtcccctcccttatacaaaaattaa #### Sfxn2_ID9971_9 --> 0 - 2 Original Alignment AAGGTCAAAGTGATGCACGCCCCCCTGCAGGTCTTGCTGTGTGGCTGCtt ttggttccctgcacctagcttttcagcagctttaacattttatttttcagAAAGTCAAAGTGATACATGCCCCCCTACAGGTC---CTTTGTGGTTGTtcgtgagatgatcttccaagaccatgagctgatcagtattcttagaacttgg Alignment from CESAR AAGGTCAAAGTGATGCACGCCCCCCTGCAGGTCTTGCTGTGTGGCTGCtt ttggttccctgcacctagcttttcagcagctttaacattttatttttcagAAAGTCAAAGTGATACATGCCCCCCTACAGGTC---CTTTGTGGTTGTtcgtgagatgatcttccaagaccatgagctgatcagtattcttagaacttgg Alignment from Spaln_aa2Genome AAGGTCAAAGTGATGCACGCCCCCCTGCAGGTCTTGCTGTGTGGCTGCTT ttggttccctgcacctagcttttcagcagctttaacattttatttttcagAAAGTCAAAGTGATACATGCCCCCCTACAGGTC---CTTTGTGGTTGTTCgtgagatgatcttccaagaccatgagctgatcagtattcttagaacttgg Alignment from Spaln_nt2Genome AAGGTCAAAGTGATGCACGCCCCCCTGCAGGTCTTGCTGTGTGGCTGCTT ttggttccctgcacctagcttttcagcagctttaacattttatttttcagAAAGTCAAAGTGATACATGCCCCCCTACAGGTC---CTTTGTGGTTGTTCgtgagatgatcttccaagaccatgagctgatcagtattcttagaacttgg Alignment from Pairagon AAGGTCAAAGTGATGCACGCCCCCCTGCAGGTCTTGCTGTGTGGCTGCTT ttggttccctgcacctagcttttcagcagctttaacattttatttttcagAAAGTCAAAGTGATACATGCCCCCCTACAGGTC---CTTTGTGGTTGTTCgtgagatgatcttccaagaccatgagctgatcagtattcttagaacttgg Alignment from Exonerate_protein2genome AAGGTCAAAGTGATGCACGCCCCCCTGCAGGTCTTGCTGTGTGGCTGCTT ttggttccctgcacctagcttttcagcagctttaacattttatttttcagAAAGTCAAAGTGATACATGCCCCCCTACAGGTC---CTTTGTGGTTGTTCgtgagatgatcttccaagaccatgagctgatcagtattcttagaacttgg Alignment from Exonerate_coding2genome ttggttccctgcacctagcttttcagcagctttaacattttatttttcagaaagtcaaagtgatacatgcccccctacaggtcctttgtggttgttcgtgagatgatcttccaagaccatgagctgatcagtattcttagaacttgg Alignment from GeneWise AAGGTCAAAGTGATGCACGCCCCCCTGCAGGTCTTGCTGTGTGGCTGCTT ttggttccctgcacctagcttttcagcagctttaacattttatttttcagAAAGTCAAAGTGATACATGCCCCCCTACAGGTCCTT---TGTGGTTGTTCgtgagatgatcttccaagaccatgagctgatcagtattcttagaacttgg #### Sfxn3_ID9290_8 --> 0 - 2 Original Alignment CGCCGTCCCTGGCTGGGGGCGCCCCTGCAGGTGGGACTGGTAGGCTTCtg tcctggctggtggaggttccactcagaggatgtgtgtttctttatcacagGGCTGTCCCTGGCTTGGGACACCACTGCAGGTGGGTCTGGTAGACTTCtggtgagttggatggagcataccaagaagcccttactgtttaggaagctatg Alignment from CESAR CGCCGTCCCTGGCTGGGGGCGCCCCTGCAGGTGGGACTGGTAGGCTTCtg tcctggctggtggaggttccactcagaggatgtgtgtttctttatcacagGGCTGTCCCTGGCTTGGGACACCACTGCAGGTGGGTCTGGTAGACTTCtggtgagttggatggagcataccaagaagcccttactgtttaggaagctatg Alignment from Spaln_aa2Genome CGCCGTCCCTGGCTGGGGGCGCCCCTGCAGGTGGGACTGGTAGGCTTCTG tcctggctggtggaggttccactcagaggatgtgtgtttctttatcacagGGCTGTCCCTGGCTTGGGACACCACTGCAGGTGGGTCTGGTAGACTTCTGgtgagttggatggagcataccaagaagcccttactgtttaggaagctatg Alignment from Spaln_nt2Genome CGCCGTCCCTGGCTGGGGGCGCCCCTGCAGGTGGGACTGGTAGGCTTCTG tcctggctggtggaggttccactcagaggatgtgtgtttctttatcacagGGCTGTCCCTGGCTTGGGACACCACTGCAGGTGGGTCTGGTAGACTTCTGgtgagttggatggagcataccaagaagcccttactgtttaggaagctatg Alignment from Pairagon CGCCGTCCCTGGCTGGGGGCGCCCCTGCAGGTGGGACTGGTAGGCTTCTG tcctggctggtggaggttccactcagaggatgtgtgtttctttatcacagGGCTGTCCCTGGCTTGGGACACCACTGCAGGTGGGTCTGGTAGACTTCTGgtgagttggatggagcataccaagaagcccttactgtttaggaagctatg Alignment from Exonerate_protein2genome CGCCGTCCCTGGCTGGGGGCGCCCCTGCAGGTGGGACTGGTAGGCTTCTG tcctggctggtggaggttccactcagaggatgtgtgtttctttatcacagGGCTGTCCCTGGCTTGGGACACCACTGCAGGTGGGTCTGGTAGACTTCTGgtgagttggatggagcataccaagaagcccttactgtttaggaagctatg Alignment from Exonerate_coding2genome tcctggctggtggaggttccactcagaggatgtgtgtttctttatcacagggctgtccctggcttgggacaccactgcaggtgggtctggtagacttctggtgagttggatggagcataccaagaagcccttactgtttaggaagctatg Alignment from GeneWise CGCCGTCCCTGGCTGGGGGCGCCCCTGCAGGTGGGACTGGTAGGCTTCTG tcctggctggtggaggttccactcagaggatgtgtgtttctttatcacagGGCTGTCCCTGGCTTGGGACACCACTGCAGGTGGGTCTGGTAGACTTCTGgtgagttggatggagcataccaagaagcccttactgtttaggaagctatg #### Sh3pxd2a_ID10167_14 --> 0 - 0 Original Alignment GGGTTCCAGCTGCCAAAGCCGCCAGAGCCCCCTTCTGTTGAGGTAGAATACTACACCATTGCTGAATTCCAGTCCTGCATTTCTGACGGGATCAGCTTTCGAGGCGGACAGAAGGCAGAG caccttagagtgacacaccataaagccctcatcttcttttcttctggtagGGGTTCCAACTGCCAAAGCCACCAGAGCCCCCCTCTGTTGAAGTAGAGTACTACACCATTGCCGAGTTCCAGTCCTGCATTTCAGATGGGATCAGCCTGCGAGGTGGACAAAAGGCAGAGgttagtctctatgggatcactgtctactttgactagactatattcttaag Alignment from CESAR GGGTTCCAGCTGCCAAAGCCGCCAGAGCCCCCTTCTGTTGAGGTAGAATACTACACCATTGCTGAATTCCAGTCCTGCATTTCTGACGGGATCAGCTTTCGAGGCGGACAGAAGGCAGAG caccttagagtgacacaccataaagccctcatcttcttttcttctggtagGGGTTCCAACTGCCAAAGCCACCAGAGCCCCCCTCTGTTGAAGTAGAGTACTACACCATTGCCGAGTTCCAGTCCTGCATTTCAGATGGGATCAGCCTGCGAGGTGGACAAAAGGCAGAGgttagtctctatgggatcactgtctactttgactagactatattcttaag Alignment from Spaln_aa2Genome GGGTTCCAGCTGCCAAAGCCGCCAGAGCCCCCTTCTGTTGAGGTAGAATACTACACCATTGCTGAATTCCAGTCCTGCATTTCTGACGGGATCAGCTTTCGAGGCGGACAGAAGGCAGAG caccttagagtgacacaccataaagccctcatcttcttttcttctggtagGGGTTCCAACTGCCAAAGCCACCAGAGCCCCCCTCTGTTGAAGTAGAGTACTACACCATTGCCGAGTTCCAGTCCTGCATTTCAGATGGGATCAGCCTGCGAGGTGGACAAAAGGCAGAGgttagtctctatgggatcactgtctactttgactagactatattcttaag Alignment from Spaln_nt2Genome GGGTTCCAGCTGCCAAAGCCGCCAGAGCCCCCTTCTGTTGAGGTAGAATACTACACCATTGCTGAATTCCAGTCCTGCATTTCTGACGGGATCAGCTTTCGAGGCGGACAGAAGGCAGAG caccttagagtgacacaccataaagccctcatcttcttttcttctggtagGGGTTCCAACTGCCAAAGCCACCAGAGCCCCCCTCTGTTGAAGTAGAGTACTACACCATTGCCGAGTTCCAGTCCTGCATTTCAGATGGGATCAGCCTGCGAGGTGGACAAAAGGCAGAGgttagtctctatgggatcactgtctactttgactagactatattcttaag Alignment from Pairagon GGGTTCCAGCTGCCAAAGCCGCCAGAGCCCCCTTCTGTTGAGGTAGAATACTACACCATTGCTGAATTCCAGTCCTGCATTTCTGACGGGATCAGCTTTCGAGGCGGACAGAAGGCAGAG caccttagagtgacacaccataaagccctcatcttcttttcttctggtagGGGTTCCAACTGCCAAAGCCACCAGAGCCCCCCTCTGTTGAAGTAGAGTACTACACCATTGCCGAGTTCCAGTCCTGCATTTCAGATGGGATCAGCCTGCGAGGTGGACAAAAGGCAGAGgttagtctctatgggatcactgtctactttgactagactatattcttaag Alignment from Exonerate_protein2genome GGGTTCCAGCTGCCAAAGCCGCCAGAGCCCCCTTCTGTTGAGGTAGAATACTACACCATTGCTGAATTCCAGTCCTGCATTTCTGACGGGATCAGCTTTCGAGGCGGACAGAAGGCAGAG caccttagagtgacacaccataaagccctcatcttcttttcttctggtagGGGTTCCAACTGCCAAAGCCACCAGAGCCCCCCTCTGTTGAAGTAGAGTACTACACCATTGCCGAGTTCCAGTCCTGCATTTCAGATGGGATCAGCCTGCGAGGTGGACAAAAGGCAGAGgttagtctctatgggatcactgtctactttgactagactatattcttaag Alignment from Exonerate_coding2genome GGGTTCCAGCTGCCAAAGCCGCCAGAGCCCCCTTCTGTTGAGGTAGAATACTACACCATTGCTGAATTCCAGTCCTGCATTTCTGACGGGATCAGCTTTCGAGGCGGACAGAAGGCAGAG caccttagagtgacacaccataaagccctcatcttcttttcttctggtagGGGTTCCAACTGCCAAAGCCACCAGAGCCCCCCTCTGTTGAAGTAGAGTACTACACCATTGCCGAGTTCCAGTCCTGCATTTCAGATGGGATCAGCCTGCGAGGTGGACAAAAGGCAGAGgttagtctctatgggatcactgtctactttgactagactatattcttaag Alignment from GeneWise GGGTTCCAGCTGCCAAAGCCGCCAGAGCCCCCTTCTGTTGAGGTAGAATACTACACCATTGCTGAATTCCAGTCCTGCATTTCTGACGGGATCAGCTTTCGAGGCGGACAGAAGGCAGAG caccttagagtgacacaccataaagccctcatcttcttttcttctggtagGGGTTCCAACTGCCAAAGCCACCAGAGCCCCCCTCTGTTGAAGTAGAGTACTACACCATTGCCGAGTTCCAGTCCTGCATTTCAGATGGGATCAGCCTGCGAGGTGGACAAAAGGCAGAGgttagtctctatgggatcactgtctactttgactagactatattcttaag #### Shoc2_ID11417_3 --> 2 - 0 Original Alignment gaAACCTGTCCAGTTTAAATCGCCTTGGCCTGAGATACAATAGATTGTCAGCAATACCCAGATCATTAGCAAAATGCAGTGCACTTGAGGAGTTAAATTTAGAGAACAATAACATTTCTACTCTACCAGAG ctcataaaggtgaaggggttttctcataactgtctctatttctcctgcaggaAACCTGTCCAGATTAAATCGCCTTGGCCTAAGATACAATAGATTGTTTGCTATACCGAGATCCTTGGCAAAATGCAGTGCACTTGAGGAGTTAAATTTAGAAAACAATAACATTTCTACTCTACCAGAGgtatgtgaggatattatgcaaactaagcaggcatagttgttactaaccta Alignment from CESAR gaAACCTGTCCAGTTTAAATCGCCTTGGCCTGAGATACAATAGATTGTCAGCAATACCCAGATCATTAGCAAAATGCAGTGCACTTGAGGAGTTAAATTTAGAGAACAATAACATTTCTACTCTACCAGAG ctcataaaggtgaaggggttttctcataactgtctctatttctcctgcaggaAACCTGTCCAGATTAAATCGCCTTGGCCTAAGATACAATAGATTGTTTGCTATACCGAGATCCTTGGCAAAATGCAGTGCACTTGAGGAGTTAAATTTAGAAAACAATAACATTTCTACTCTACCAGAGgtatgtgaggatattatgcaaactaagcaggcatagttgttactaaccta Alignment from Spaln_aa2Genome GAAACCTGTCCAGTTTAAATCGCCTTGGCCTGAGATACAATAGATTGTCAGCAATACCCAGATCATTAGCAAAATGCAGTGCACTTGAGGAGTTAAATTTAGAGAACAATAACATTTCTACTCTACCAGAG ctcataaaggtgaaggggttttctcataactgtctctatttctcctgcagGAAACCTGTCCAGATTAAATCGCCTTGGCCTAAGATACAATAGATTGTTTGCTATACCGAGATCCTTGGCAAAATGCAGTGCACTTGAGGAGTTAAATTTAGAAAACAATAACATTTCTACTCTACCAGAGgtatgtgaggatattatgcaaactaagcaggcatagttgttactaaccta Alignment from Spaln_nt2Genome GAAACCTGTCCAGTTTAAATCGCCTTGGCCTGAGATACAATAGATTGTCAGCAATACCCAGATCATTAGCAAAATGCAGTGCACTTGAGGAGTTAAATTTAGAGAACAATAACATTTCTACTCTACCAGAG ctcataaaggtgaaggggttttctcataactgtctctatttctcctgcagGAAACCTGTCCAGATTAAATCGCCTTGGCCTAAGATACAATAGATTGTTTGCTATACCGAGATCCTTGGCAAAATGCAGTGCACTTGAGGAGTTAAATTTAGAAAACAATAACATTTCTACTCTACCAGAGgtatgtgaggatattatgcaaactaagcaggcatagttgttactaaccta Alignment from Pairagon GAAACCTGTCCAGTTTAAATCGCCTTGGCCTGAGATACAATAGATTGTCAGCAATACCCAGATCATTAGCAAAATGCAGTGCACTTGAGGAGTTAAATTTAGAGAACAATAACATTTCTACTCTACCAGAG ctcataaaggtgaaggggttttctcataactgtctctatttctcctgcagGAAACCTGTCCAGATTAAATCGCCTTGGCCTAAGATACAATAGATTGTTTGCTATACCGAGATCCTTGGCAAAATGCAGTGCACTTGAGGAGTTAAATTTAGAAAACAATAACATTTCTACTCTACCAGAGgtatgtgaggatattatgcaaactaagcaggcatagttgttactaaccta Alignment from Exonerate_protein2genome GAAACCTGTCCAGTTTAAATCGCCTTGGCCTGAGATACAATAGATTGTCAGCAATACCCAGATCATTAGCAAAATGCAGTGCACTTGAGGAGTTAAATTTAGAGAACAATAACATTTCTACTCTACCAGAG ctcataaaggtgaaggggttttctcataactgtctctatttctcctgcagGAAACCTGTCCAGATTAAATCGCCTTGGCCTAAGATACAATAGATTGTTTGCTATACCGAGATCCTTGGCAAAATGCAGTGCACTTGAGGAGTTAAATTTAGAAAACAATAACATTTCTACTCTACCAGAGgtatgtgaggatattatgcaaactaagcaggcatagttgttactaaccta Alignment from Exonerate_coding2genome GAAACCTGTCCAGTTTAAATCGCCTTGGCCTGAGATACAATAGATTGTCAGCAATACCCAGATCATTAGCAAAATGCAGTGCACTTGAGGAGTTAAATTTAGAGAACAATAACATTTCTACTCTACCAGAG ctcataaaggtgaaggggttttctcataactgtctctatttctcctgcagGAAACCTGTCCAGATTAAATCGCCTTGGCCTAAGATACAATAGATTGTTTGCTATACCGAGATCCTTGGCAAAATGCAGTGCACTTGAGGAGTTAAATTTAGAAAACAATAACATTTCTACTCTACCAGAGgtatgtgaggatattatgcaaactaagcaggcatagttgttactaaccta Alignment from GeneWise GAAACCTGTCCAGTTTAAATCGCCTTGGCCTGAGATACAATAGATTGTCAGCAATACCCAGATCATTAGCAAAATGCAGTGCACTTGAGGAGTTAAATTTAGAGAACAATAACATTTCTACTCTACCAGAG ctcataaaggtgaaggggttttctcataactgtctctatttctcctgcagGAAACCTGTCCAGATTAAATCGCCTTGGCCTAAGATACAATAGATTGTTTGCTATACCGAGATCCTTGGCAAAATGCAGTGCACTTGAGGAGTTAAATTTAGAAAACAATAACATTTCTACTCTACCAGAGgtatgtgaggatattatgcaaactaagcaggcatagttgttactaaccta #### Shoc2_ID11418_4 --> 0 - 0 Original Alignment AGTCTTTTATCCAGTCTTGTAAAATTGAATAGCTTGACCTTAGCTAGAAATTGCTTCCAGTTATATCCAGTGGGAGGTCCATCTCAGTTTTCCACCATTTATTCCCTCAACATGGAACACAATCGAATCAACAAAATCCCATTTGGAATTTTTTCCAGAGCTAAAGTGTTAAGTAAGCTGAATATGAAG catttcatcagttcactaaatgttagtggaaacccttgtggtattttcagAGTCTTTTATCTAGTCTTATCAGATTGAACAGCTTGACTCTAGCAAGAACCTGCTTCCAGCTATATTTGGTGGGTGGCCCATCCCAGATCACCACAATCTATTCTCTGAACATGGGACACAATCGGATCAACAAAATCCCATTTGATATCTTTTCCAGGACTAAAATCTTAAGTGAATTGAATATGAAAgtaagtaaagtgcacatcctatcaatcccatatataacatctctaattac Alignment from CESAR AGTCTTTTATCCAGTCTTGTAAAATTGAATAGCTTGACCTTAGCTAGAAATTGCTTCCAGTTATATCCAGTGGGAGGTCCATCTCAGTTTTCCACCATTTATTCCCTCAACATGGAACACAATCGAATCAACAAAATCCCATTTGGAATTTTTTCCAGAGCTAAAGTGTTAAGTAAGCTGAATATGAAG catttcatcagttcactaaatgttagtggaaacccttgtggtattttcagAGTCTTTTATCTAGTCTTATCAGATTGAACAGCTTGACTCTAGCAAGAACCTGCTTCCAGCTATATTTGGTGGGTGGCCCATCCCAGATCACCACAATCTATTCTCTGAACATGGGACACAATCGGATCAACAAAATCCCATTTGATATCTTTTCCAGGACTAAAATCTTAAGTGAATTGAATATGAAAgtaagtaaagtgcacatcctatcaatcccatatataacatctctaattac Alignment from Spaln_aa2Genome AGTCTTTTATCCAGTCTTGTAAAATTGAATAGCTTGACCTTAGCTAGAAATTGCTTCCAGTTATATCCAGTGGGAGGTCCATCTCAGTTTTCCACCATTTATTCCCTCAACATGGAACACAATCGAATCAACAAAATCCCATTTGGAATTTTTTCCAGAGCTAAAGTGTTAAGTAAGCTGAATATGAAG catttcatcagttcactaaatgttagtggaaacccttgtggtattttcagAGTCTTTTATCTAGTCTTATCAGATTGAACAGCTTGACTCTAGCAAGAACCTGCTTCCAGCTATATTTGGTGGGTGGCCCATCCCAGATCACCACAATCTATTCTCTGAACATGGGACACAATCGGATCAACAAAATCCCATTTGATATCTTTTCCAGGACTAAAATCTTAAGTGAATTGAATATGAAAgtaagtaaagtgcacatcctatcaatcccatatataacatctctaattac Alignment from Spaln_nt2Genome AGTCTTTTATCCAGTCTTGTAAAATTGAATAGCTTGACCTTAGCTAGAAATTGCTTCCAGTTATATCCAGTGGGAGGTCCATCTCAGTTTTCCACCATTTATTCCCTCAACATGGAACACAATCGAATCAACAAAATCCCATTTGGAATTTTTTCCAGAGCTAAAGTGTTAAGTAAGCTGAATATGAAG catttcatcagttcactaaatgttagtggaaacccttgtggtattttcagAGTCTTTTATCTAGTCTTATCAGATTGAACAGCTTGACTCTAGCAAGAACCTGCTTCCAGCTATATTTGGTGGGTGGCCCATCCCAGATCACCACAATCTATTCTCTGAACATGGGACACAATCGGATCAACAAAATCCCATTTGATATCTTTTCCAGGACTAAAATCTTAAGTGAATTGAATATGAAAgtaagtaaagtgcacatcctatcaatcccatatataacatctctaattac Alignment from Pairagon AGTCTTTTATCCAGTCTTGTAAAATTGAATAGCTTGACCTTAGCTAGAAATTGCTTCCAGTTATATCCAGTGGGAGGTCCATCTCAGTTTTCCACCATTTATTCCCTCAACATGGAACACAATCGAATCAACAAAATCCCATTTGGAATTTTTTCCAGAGCTAAAGTGTTAAGTAAGCTGAATATGAAG catttcatcagttcactaaatgttagtggaaacccttgtggtattttcagAGTCTTTTATCTAGTCTTATCAGATTGAACAGCTTGACTCTAGCAAGAACCTGCTTCCAGCTATATTTGGTGGGTGGCCCATCCCAGATCACCACAATCTATTCTCTGAACATGGGACACAATCGGATCAACAAAATCCCATTTGATATCTTTTCCAGGACTAAAATCTTAAGTGAATTGAATATGAAAgtaagtaaagtgcacatcctatcaatcccatatataacatctctaattac Alignment from Exonerate_protein2genome AGTCTTTTATCCAGTCTTGTAAAATTGAATAGCTTGACCTTAGCTAGAAATTGCTTCCAGTTATATCCAGTGGGAGGTCCATCTCAGTTTTCCACCATTTATTCCCTCAACATGGAACACAATCGAATCAACAAAATCCCATTTGGAATTTTTTCCAGAGCTAAAGTGTTAAGTAAGCTGAATATGAAG catttcatcagttcactaaatgttagtggaaacccttgtggtattttcagAGTCTTTTATCTAGTCTTATCAGATTGAACAGCTTGACTCTAGCAAGAACCTGCTTCCAGCTATATTTGGTGGGTGGCCCATCCCAGATCACCACAATCTATTCTCTGAACATGGGACACAATCGGATCAACAAAATCCCATTTGATATCTTTTCCAGGACTAAAATCTTAAGTGAATTGAATATGAAAgtaagtaaagtgcacatcctatcaatcccatatataacatctctaattac Alignment from Exonerate_coding2genome AGTCTTTTATCCAGTCTTGTAAAATTGAATAGCTTGACCTTAGCTAGAAATTGCTTCCAGTTATATCCAGTGGGAGGTCCATCTCAGTTTTCCACCATTTATTCCCTCAACATGGAACACAATCGAATCAACAAAATCCCATTTGGAATTTTTTCCAGAGCTAAAGTGTTAAGTAAGCTGAATATGAAG catttcatcagttcactaaatgttagtggaaacccttgtggtattttcagAGTCTTTTATCTAGTCTTATCAGATTGAACAGCTTGACTCTAGCAAGAACCTGCTTCCAGCTATATTTGGTGGGTGGCCCATCCCAGATCACCACAATCTATTCTCTGAACATGGGACACAATCGGATCAACAAAATCCCATTTGATATCTTTTCCAGGACTAAAATCTTAAGTGAATTGAATATGAAAgtaagtaaagtgcacatcctatcaatcccatatataacatctctaattac Alignment from GeneWise AGTCTTTTATCCAGTCTTGTAAAATTGAATAGCTTGACCTTAGCTAGAAATTGCTTCCAGTTATATCCAGTGGGAGGTCCATCTCAGTTTTCCACCATTTATTCCCTCAACATGGAACACAATCGAATCAACAAAATCCCATTTGGAATTTTTTCCAGAGCTAAAGTGTTAAGTAAGCTGAATATGAAG catttcatcagttcactaaatgttagtggaaacccttgtggtattttcagAGTCTTTTATCTAGTCTTATCAGATTGAACAGCTTGACTCTAGCAAGAACCTGCTTCCAGCTATATTTGGTGGGTGGCCCATCCCAGATCACCACAATCTATTCTCTGAACATGGGACACAATCGGATCAACAAAATCCCATTTGATATCTTTTCCAGGACTAAAATCTTAAGTGAATTGAATATGAAAgtaagtaaagtgcacatcctatcaatcccatatataacatctctaattac #### Sipa1_ID1145_7 --> 1 - 0 Original Alignment gGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG actcttggctgggcactcccatttctttttttttttttttttttttacaggGTGGCAGTGAGTCGTACAAAAGACACTCCTGCCTTCAGTCCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATACTGACTTCCAAGCATTCCCATGGGCGAAGGCACTAAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGACTACATGTACACGGCAACAGTACCTGCAAGACTTGGCAACAAATGAGGTGAGTACTACTTTGCTAGACTTGGCCTCACGATTTGGGTTACCATCCCTAGGCGGTAGACACCAC------CCGCAGAGTTCTGGAGCAAAGCTACAAGCAACTGATGCATTGATGTGGGGTGTACGTGCAGCTCCAGGGGCACGGGTTGCAGCAGGGGCCGAAACAAAAGGTCCGGAAGATACTGAAGTACCTTGCTTATTGGGTATCTCTGCTGAAACGCTAGTGCTGGTCACACCTTCTGATAGTCATGTGGTCTTTAACTGTACATGTCGAGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGACCTATACCATGGGCGTGGGAAAGCAATCACATTGCAATTGGATGGTCCACCAGGTCAAGCTGTTGGTGATGTTGTGGCGCGTCTGCAAgtaatttgcaattactggagtaagcacacaatgacatgacatagaagtga Alignment from CESAR gGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG actcttggctgggcactcccatttctttttttttttttttttttttacaggGTGGCAGTGAGTCGTACAAAAGACACTCCTGCCTTCAGTCCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATACTGACTTCCAAGCATTCCCATGGGCGAAGGCACTAAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGACTACATGTACACGGCAACAGTACCTGCAAGACTTGGCAACAAATGAGGTGAGTACTACTTTGCTAGACTTGGCCTCACGATTTGGGTTACCATCCCTAGGCGGTAGACACCAC------CCGCAGAGTTCTGGAGCAAAGCTACAAGCAACTGATGCATTGATGTGGGGTGTACGTGCAGCTCCAGGGGCACGGGTTGCAGCAGGGGCCGAAACAAAAGGTCCGGAAGATACTGAAGTACCTTGCTTATTGGGTATCTCTGCTGAAACGCTAGTGCTGGTCACACCTTCTGATAGTCATGTGGTCTTTAACTGTACATGTCGAGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGACCTATACCATGGGCGTGGGAAAGCAATCACATTGCAATTGGATGGTCCACCAGGTCAAGCTGTTGGTGATGTTGTGGCGCGTCTGCAAgtaatttgcaattactggagtaagcacacaatgacatgacatagaagtga Alignment from Spaln_aa2Genome GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG actcttggctgggcactcccatttctttttttttttttttttttttacagGGTGGCAGTGAGTCGTACAAAAGACACTCCTGCCTTCAGTCCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATACTGACTTCCAAGCATTCCCATGGGCGAAGGCACTAAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGACTACATGTACACGGCAACAGTACCTGCAAGACTTGGCAACAAATGAGGTGAGTACTACTTTGCTAGACTTGGCCTCACGATTTGGGTTACCATCCCTAGGCGGTAGACACCAC------CCGCAGAGTTCTGGAGCAAAGCTACAAGCAACTGATGCATTGATGTGGGGTGTACGTGCAGCTCCAGGGGCACGGGTTGCAGCAGGGGCCGAAACAAAAGGTCCGGAAGATACTGAAGTACCTTGCTTATTGGGTATCTCTGCTGAAACGCTAGTGCTGGTCACACCTTCTGATAGTCATGTGGTCTTTAACTGTACATGTCGAGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGACCTATACCATGGGCGTGGGAAAGCAATCACATTGCAATTGGATGGTCCACCAGGTCAAGCTGTTGGTGATGTTGTGGCGCGTCTGCAAgtaatttgcaattactggagtaagcacacaatgacatgacatagaagtga Alignment from Spaln_nt2Genome GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG actcttggctgggcactcccatttctttttttttttttttttttttacagGGTGGCAGTGAGTCGTACAAAAGACACTCCTGCCTTCAGTCCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATACTGACTTCCAAGCATTCCCATGGGCGAAGGCACTAAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGACTACATGTACACGGCAACAGTACCTGCAAGACTTGGCAACAAATGAGGTGAGTACTACTTTGCTAGACTTGGCCTCACGATTTGGGTTACCATCCCTAGGCGGTAGACACC------ACCCGCAGAGTTCTGGAGCAAAGCTACAAGCAACTGATGCATTGATGTGGGGTGTACGTGCAGCTCCAGGGGCACGGGTTGCAGCAGGGGCCGAAACAAAAGGTCCGGAAGATACTGAAGTACCTTGCTTATTGGGTATCTCTGCTGAAACGCTAGTGCTGGTCACACCTTCTGATAGTCATGTGGTCTTTAACTGTACATGTCGAGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGACCTATACCATGGGCGTGGGAAAGCAATCACATTGCAATTGGATGGTCCACCAGGTCAAGCTGTTGGTGATGTTGTGGCGCGTCTGCAAgtaatttgcaattactggagtaagcacacaatgacatgacatagaagtga Alignment from Pairagon GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG actcttggctgggcactcccatttctttttttttttttttttttttacagGGTGGCAGTGAGTCGTACAAAAGACACTCCTGCCTTCAGTCCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATACTGACTTCCAAGCATTCCCATGGGCGAAGGCACTAAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGACTACATGTACACGGCAACAGTACCTGCAAGACTTGGCAACAAATGAGGTGAGTACTACTTTGCTAGACTTGGCCTCACGATTTGGGTTACCATCCCTAGGCGGTAGACACCA------CCCGCAGAGTTCTGGAGCAAAGCTACAAGCAACTGATGCATTGATGTGGGGTGTACGTGCAGCTCCAGGGGCACGGGTTGCAGCAGGGGCCGAAACAAAAGGTCCGGAAGATACTGAAGTACCTTGCTTATTGGGTATCTCTGCTGAAACGCTAGTGCTGGTCACACCTTCTGATAGTCATGTGGTCTTTAACTGTACATGTCGAGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGACCTATACCATGGGCGTGGGAAAGCAATCACATTGCAATTGGATGGTCCACCAGGTCAAGCTGTTGGTGATGTTGTGGCGCGTCTGCAAgtaatttgcaattactggagtaagcacacaatgacatgacatagaagtga Alignment from Exonerate_protein2genome GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG actcttggctgggcactcccatttctttttttttttttttttttttacagGGTGGCAGTGAGTCGTACAAAAGACACTCCTGCCTTCAGTCCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATACTGACTTCCAAGCATTCCCATGGGCGAAGGCACTAAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGACTACATGTACACGGCAACAGTACCTGCAAGACTTGGCAACAAATGAGGTGAGTACTACTTTGCTAGACTTGGCCTCACGATTTGGGTTACCATCCCTAGGCGGTAGACACCAC------CCGCAGAGTTCTGGAGCAAAGCTACAAGCAACTGATGCATTGATGTGGGGTGTACGTGCAGCTCCAGGGGCACGGGTTGCAGCAGGGGCCGAAACAAAAGGTCCGGAAGATACTGAAGTACCTTGCTTATTGGGTATCTCTGCTGAAACGCTAGTGCTGGTCACACCTTCTGATAGTCATGTGGTCTTTAACTGTACATGTCGAGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGACCTATACCATGGGCGTGGGAAAGCAATCACATTGCAATTGGATGGTCCACCAGGTCAAGCTGTTGGTGATGTTGTGGCGCGTCTGCAAgtaatttgcaattactggagtaagcacacaatgacatgacatagaagtga Alignment from Exonerate_coding2genome GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG actcttggctgggcactcccatttctttttttttttttttttttttacagGGTGGCAGTGAGTCGTACAAAAGACACTCCTGCCTTCAGTCCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATACTGACTTCCAAGCATTCCCATGGGCGAAGGCACTAAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGACTACATGTACACGGCAACAGTACCTGCAAGACTTGGCAACAAATGAGGTGAGTACTACTTTGCTAGACTTGGCCTCACGATTTGGGTTACCATCCCTAGGCGGTAGACACCAC------CCGCAGAGTTCTGGAGCAAAGCTACAAGCAACTGATGCATTGATGTGGGGTGTACGTGCAGCTCCAGGGGCACGGGTTGCAGCAGGGGCCGAAACAAAAGGTCCGGAAGATACTGAAGTACCTTGCTTATTGGGTATCTCTGCTGAAACGCTAGTGCTGGTCACACCTTCTGATAGTCATGTGGTCTTTAACTGTACATGTCGAGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGACCTATACCATGGGCGTGGGAAAGCAATCACATTGCAATTGGATGGTCCACCAGGTCAAGCTGTTGGTGATGTTGTGGCGCGTCTGCAAgtaatttgcaattactggagtaagcacacaatgacatgacatagaagtga Alignment from GeneWise GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG actcttggctgggcactcccatttctttttttttttttttttttttacagGGTGGCAGTGAGTCGTACAAAAGACACTCCTGCCTTCAGTCCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATACTGACTTCCAAGCATTCCCATGGGCGAAGGCACTAAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGACTACATGTACACGGCAACAGTACCTGCAAGACTTGGCAACAAATGAGGTGAGTACTACTTTGCTAGACTTGGCCTCACGATTTGGGTTACCATCCCTAGGCGGTAGACACCAC------CCGCAGAGTTCTGGAGCAAAGCTACAAGCAACTGATGCATTGATGTGGGGTGTACGTGCAGCTCCAGGGGCACGGGTTGCAGCAGGGGCCGAAACAAAAGGTCCGGAAGATACTGAAGTACCTTGCTTATTGGGTATCTCTGCTGAAACGCTAGTGCTGGTCACACCTTCTGATAGTCATGTGGTCTTTAACTGTACATGTCGAGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGACCTATACCATGGGCGTGGGAAAGCAATCACATTGCAATTGGATGGTCCACCAGGTCAAGCTGTTGGTGATGTTGTGGCGCGTCTGCAAgtaatttgcaattactggagtaagcacacaatgacatgacatagaagtga #### Sipa1_ID1148_4 --> 0 - 1 Original Alignment CTGAGCTTCCAACGCAAGGTGGGCATCCTGTACTGCCGCGCAGGCCAGGGCTCTGAGGAAGAGATGTACAACAACCAGGAGGCCGGAGCAGCCTTTATGCAGTTCCTTACCTTGCTGGGTGATGTGGTGCGACTCAAAGGCTTTGAAAGTTACCGGGCCCAGCTGGATACCAAAa gctcttcccatgctttagagcagccaggaaaagttttgaatttttttcagCTGAGTTACCAATGTAAAGTGGGCATCCTATACTGTCGTGCAGATCAAGGGTCTGAGGAAGAGATGTATAACAACCAGGAGGCAATAGCTGCCTTCATGCGACTGATCACTTCACTGGGTGATGTAGTGTGCCTAAAGGGGTTTGAGATTTACCGGGCCCAATTAGAGACCAAGtgtctgttctatgagactgaccaatatgttgggatatgacaaatttgaaac Alignment from CESAR CTGAGCTTCCAACGCAAGGTGGGCATCCTGTACTGCCGCGCAGGCCAGGGCTCTGAGGAAGAGATGTACAACAACCAGGAGGCCGGAGCAGCCTTTATGCAGTTCCTTACCTTGCTGGGTGATGTGGTGCGACTCAAAGGCTTTGAAAGTTACCGGGCCCAGCTGGATACCAAAa gctcttcccatgctttagagcagccaggaaaagttttgaatttttttcagCTGAGTTACCAATGTAAAGTGGGCATCCTATACTGTCGTGCAGATCAAGGGTCTGAGGAAGAGATGTATAACAACCAGGAGGCAATAGCTGCCTTCATGCGACTGATCACTTCACTGGGTGATGTAGTGTGCCTAAAGGGGTTTGAGATTTACCGGGCCCAATTAGAGACCAAGtgtctgttctatgagactgaccaatatgttgggatatgacaaatttgaaac Alignment from Spaln_aa2Genome CTGAGCTTCCAACGCAAGGTGGGCATCCTGTACTGCCGCGCAGGCCAGGGCTCTGAGGAAGAGATGTACAACAACCAGGAGGCCGGAGCAGCCTTTATGCAGTTCCTTACCTTGCTGGGTGATGTGGTGCGACTCAAAGGCTTTGAAAGTTACCGGGCCCAGCTGGATACCAAAA gctcttcccatgctttagagcagccaggaaaagttttgaatttttttcagCTGAGTTACCAATGTAAAGTGGGCATCCTATACTGTCGTGCAGATCAAGGGTCTGAGGAAGAGATGTATAACAACCAGGAGGCAATAGCTGCCTTCATGCGACTGATCACTTCACTGGGTGATGTAGTGTGCCTAAAGGGGTTTGAGATTTACCGGGCCCAATTAGAGACCAAGTgtctgttctatgagactgaccaatatgttgggatatgacaaatttgaaac Alignment from Spaln_nt2Genome CTGAGCTTCCAACGCAAGGTGGGCATCCTGTACTGCCGCGCAGGCCAGGGCTCTGAGGAAGAGATGTACAACAACCAGGAGGCCGGAGCAGCCTTTATGCAGTTCCTTACCTTGCTGGGTGATGTGGTGCGACTCAAAGGCTTTGAAAGTTACCGGGCCCAGCTGGATACCAAAA gctcttcccatgctttagagcagccaggaaaagttttgaatttttttcagCTGAGTTACCAATGTAAAGTGGGCATCCTATACTGTCGTGCAGATCAAGGGTCTGAGGAAGAGATGTATAACAACCAGGAGGCAATAGCTGCCTTCATGCGACTGATCACTTCACTGGGTGATGTAGTGTGCCTAAAGGGGTTTGAGATTTACCGGGCCCAATTAGAGACCAAGTgtctgttctatgagactgaccaatatgttgggatatgacaaatttgaaac Alignment from Pairagon CTGAGCTTCCAACGCAAGGTGGGCATCCTGTACTGCCGCGCAGGCCAGGGCTCTGAGGAAGAGATGTACAACAACCAGGAGGCCGGAGCAGCCTTTATGCAGTTCCTTACCTTGCTGGGTGATGTGGTGCGACTCAAAGGCTTTGAAAGTTACCGGGCCCAGCTGGATACCAA gctcttcccatgctttagagcagccaggaaaagttttgaatttttttcagCTGAGTTACCAATGTAAAGTGGGCATCCTATACTGTCGTGCAGATCAAGGGTCTGAGGAAGAGATGTATAACAACCAGGAGGCAATAGCTGCCTTCATGCGACTGATCACTTCACTGGGTGATGTAGTGTGCCTAAAGGGGTTTGAGATTTACCGGGCCCAATTAGAGACCAAgtgtctgttctatgagactgaccaatatgttgggatatgacaaatttgaaac Alignment from Exonerate_protein2genome CTGAGCTTCCAACGCAAGGTGGGCATCCTGTACTGCCGCGCAGGCCAGGGCTCTGAGGAAGAGATGTACAACAACCAGGAGGCCGGAGCAGCCTTTATGCAGTTCCTTACCTTGCTGGGTGATGTGGTGCGACTCAAAGGCTTTGAAAGTTACCGGGCCCAGCTGGATACCAAAA gctcttcccatgctttagagcagccaggaaaagttttgaatttttttcagCTGAGTTACCAATGTAAAGTGGGCATCCTATACTGTCGTGCAGATCAAGGGTCTGAGGAAGAGATGTATAACAACCAGGAGGCAATAGCTGCCTTCATGCGACTGATCACTTCACTGGGTGATGTAGTGTGCCTAAAGGGGTTTGAGATTTACCGGGCCCAATTAGAGACCAAGTgtctgttctatgagactgaccaatatgttgggatatgacaaatttgaaac Alignment from Exonerate_coding2genome CTGAGCTTCCAACGCAAGGTGGGCATCCTGTACTGCCGCGCAGGCCAGGGCTCTGAGGAAGAGATGTACAACAACCAGGAGGCCGGAGCAGCCTTTATGCAGTTCCTTACCTTGCTGGGTGATGTGGTGCGACTCAAAGGCTTTGAAAGTTACCGGGCCCAGCTGGATACCAAAA gctcttcccatgctttagagcagccaggaaaagttttgaatttttttcagCTGAGTTACCAATGTAAAGTGGGCATCCTATACTGTCGTGCAGATCAAGGGTCTGAGGAAGAGATGTATAACAACCAGGAGGCAATAGCTGCCTTCATGCGACTGATCACTTCACTGGGTGATGTAGTGTGCCTAAAGGGGTTTGAGATTTACCGGGCCCAATTAGAGACCAAGTgtctgttctatgagactgaccaatatgttgggatatgacaaatttgaaac Alignment from GeneWise CTGAGCTTCCAACGCAAGGTGGGCATCCTGTACTGCCGCGCAGGCCAGGGCTCTGAGGAAGAGATGTACAACAACCAGGAGGCCGGAGCAGCCTTTATGCAGTTCCTTACCTTGCTGGGTGATGTGGTGCGACTCAAAGGCTTTGAAAGTTACCGGGCCCAGCTGGATACCAAAA gctcttcccatgctttagagcagccaggaaaagttttgaatttttttcagCTGAGTTACCAATGTAAAGTGGGCATCCTATACTGTCGTGCAGATCAAGGGTCTGAGGAAGAGATGTATAACAACCAGGAGGCAATAGCTGCCTTCATGCGACTGATCACTTCACTGGGTGATGTAGTGTGCCTAAAGGGGTTTGAGATTTACCGGGCCCAATTAGAGACCAAGTgtctgttctatgagactgaccaatatgttgggatatgacaaatttgaaac #### Sipa1_ID1150_2 --> 2 - 0 Original Alignment aaCACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG caagaggcatcacaacaaaccaagaacaatgtaaaaaattacatttacagaaCATCAAAACTTCTTTGGACTAGATGAGGCACTAGGTCCAGTGGCTTTGAGTCTCCAACGGGAGGAAAAGGAGGGCAGTCGAGGGGCCCCCTTACACAGCTTTCAAGTCATTGTGCGAACAATGCAGgtaatcaacatagtgaacaggcaacctacaaaatgggagaatatacaaga Alignment from CESAR aaCACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG caagaggcatcacaacaaaccaagaacaatgtaaaaaattacatttacagaaCATCAAAACTTCTTTGGACTAGATGAGGCACTAGGTCCAGTGGCTTTGAGTCTCCAACGGGAGGAAAAGGAGGGCAGTCGAGGGGCCCCCTTACACAGCTTTCAAGTCATTGTGCGAACAATGCAGgtaatcaacatagtgaacaggcaacctacaaaatgggagaatatacaaga Alignment from Spaln_aa2Genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG caagaggcatcacaacaaaccaagaacaatgtaaaaaattacatttacagAACATCAAAACTTCTTTGGACTAGATGAGGCACTAGGTCCAGTGGCTTTGAGTCTCCAACGGGAGGAAAAGGAGGGCAGTCGAGGGGCCCCCTTACACAGCTTTCAAGTCATTGTGCGAACAATGCAGgtaatcaacatagtgaacaggcaacctacaaaatgggagaatatacaaga Alignment from Spaln_nt2Genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG caagaggcatcacaacaaaccaagaacaatgtaaaaaattacatttacagAACATCAAAACTTCTTTGGACTAGATGAGGCACTAGGTCCAGTGGCTTTGAGTCTCCAACGGGAGGAAAAGGAGGGCAGTCGAGGGGCCCCCTTACACAGCTTTCAAGTCATTGTGCGAACAATGCAGgtaatcaacatagtgaacaggcaacctacaaaatgggagaatatacaaga Alignment from Pairagon AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG caagaggcatcacaacaaaccaagaacaatgtaaaaaattacatttacagAACATCAAAACTTCTTTGGACTAGATGAGGCACTAGGTCCAGTGGCTTTGAGTCTCCAACGGGAGGAAAAGGAGGGCAGTCGAGGGGCCCCCTTACACAGCTTTCAAGTCATTGTGCGAACAATGCAGgtaatcaacatagtgaacaggcaacctacaaaatgggagaatatacaaga Alignment from Exonerate_protein2genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG caagaggcatcacaacaaaccaagaacaatgtaaaaaattacatttacagAACATCAAAACTTCTTTGGACTAGATGAGGCACTAGGTCCAGTGGCTTTGAGTCTCCAACGGGAGGAAAAGGAGGGCAGTCGAGGGGCCCCCTTACACAGCTTTCAAGTCATTGTGCGAACAATGCAGgtaatcaacatagtgaacaggcaacctacaaaatgggagaatatacaaga Alignment from Exonerate_coding2genome caagaggcatcacaacaaaccaagaacaatgtaaaaaattacatttacagaacatcaaaacttctttggactagatgaggcactaggtccagtggctttgagtctccaacgggaggaaaaggagggcagtcgaggggcccccttacacagctttcaagtcattgtgcgaacaatgcaggtaatcaacatagtgaacaggcaacctacaaaatgggagaatatacaaga Alignment from GeneWise AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG caagaggcatcacaacaaaccaagaacaatgtaaaaaattacatttacagAACATCAAAACTTCTTTGGACTAGATGAGGCACTAGGTCCAGTGGCTTTGAGTCTCCAACGGGAGGAAAAGGAGGGCAGTCGAGGGGCCCCCTTACACAGCTTTCAAGTCATTGTGCGAACAATGCAGgtaatcaacatagtgaacaggcaacctacaaaatgggagaatatacaaga #### Slc15a3_ID3031_6 --> 2 - 1 Original Alignment gaGTCCTGGAGAAAGAACGCTTACAGTACATTGCTGCCAACCAGACAGTGCCTCAGCTGATTGGGAAGGACTTATACTATGCAGCGCCACTGTCTATCTGGTGGCAGATCCCCCAGTACCTGCTCATCGGGGTCAGTGAGATCTTTGCCAGCATCCCAg tgagggttccagcactacctctcgatatgtcttccctggcctctttccagggGTCCTAGAGAAGGAACACCTGCACTATATTGCTGCAAATCAGACAGTACCGCAACTGATCAGCCAGGATTTATACTATGCAGTGCCACTGTCTATTTGGTGGCAGACCCCACAGTACTTACTCATTGGTGTCAGTGAAATCTTTGCCAGCATCCCAggtaagtcaaatcccccctggggttaccatgttggtctggttatcatgtgg Alignment from CESAR gaGTCCTGGAGAAAGAACGCTTACAGTACATTGCTGCCAACCAGACAGTGCCTCAGCTGATTGGGAAGGACTTATACTATGCAGCGCCACTGTCTATCTGGTGGCAGATCCCCCAGTACCTGCTCATCGGGGTCAGTGAGATCTTTGCCAGCATCCCAg tgagggttccagcactacctctcgatatgtcttccctggcctctttccagggGTCCTAGAGAAGGAACACCTGCACTATATTGCTGCAAATCAGACAGTACCGCAACTGATCAGCCAGGATTTATACTATGCAGTGCCACTGTCTATTTGGTGGCAGACCCCACAGTACTTACTCATTGGTGTCAGTGAAATCTTTGCCAGCATCCCAggtaagtcaaatcccccctggggttaccatgttggtctggttatcatgtgg Alignment from Spaln_aa2Genome GAGTCCTGGAGAAAGAACGCTTACAGTACATTGCTGCCAACCAGACAGTGCCTCAGCTGATTGGGAAGGACTTATACTATGCAGCGCCACTGTCTATCTGGTGGCAGATCCCCCAGTACCTGCTCATCGGGGTCAGTGAGATCTTTGCCAGCATCCCAG tgagggttccagcactacctctcgatatgtcttccctggcctctttccagGGGTCCTAGAGAAGGAACACCTGCACTATATTGCTGCAAATCAGACAGTACCGCAACTGATCAGCCAGGATTTATACTATGCAGTGCCACTGTCTATTTGGTGGCAGACCCCACAGTACTTACTCATTGGTGTCAGTGAAATCTTTGCCAGCATCCCAGgtaagtcaaatcccccctggggttaccatgttggtctggttatcatgtgg Alignment from Spaln_nt2Genome GAGTCCTGGAGAAAGAACGCTTACAGTACATTGCTGCCAACCAGACAGTGCCTCAGCTGATTGGGAAGGACTTATACTATGCAGCGCCACTGTCTATCTGGTGGCAGATCCCCCAGTACCTGCTCATCGGGGTCAGTGAGATCTTTGCCAGCATCCCAG tgagggttccagcactacctctcgatatgtcttccctggcctctttccagGGGTCCTAGAGAAGGAACACCTGCACTATATTGCTGCAAATCAGACAGTACCGCAACTGATCAGCCAGGATTTATACTATGCAGTGCCACTGTCTATTTGGTGGCAGACCCCACAGTACTTACTCATTGGTGTCAGTGAAATCTTTGCCAGCATCCCAGgtaagtcaaatcccccctggggttaccatgttggtctggttatcatgtgg Alignment from Pairagon GAGTCCTGGAGAAAGAACGCTTACAGTACATTGCTGCCAACCAGACAGTGCCTCAGCTGATTGGGAAGGACTTATACTATGCAGCGCCACTGTCTATCTGGTGGCAGATCCCCCAGTACCTGCTCATCGGGGTCAGTGAGATCTTTGCCAGCATCCCAG tgagggttccagcactacctctcgatatgtcttccctggcctctttccagGGGTCCTAGAGAAGGAACACCTGCACTATATTGCTGCAAATCAGACAGTACCGCAACTGATCAGCCAGGATTTATACTATGCAGTGCCACTGTCTATTTGGTGGCAGACCCCACAGTACTTACTCATTGGTGTCAGTGAAATCTTTGCCAGCATCCCAGgtaagtcaaatcccccctggggttaccatgttggtctggttatcatgtgg Alignment from Exonerate_protein2genome GAGTCCTGGAGAAAGAACGCTTACAGTACATTGCTGCCAACCAGACAGTGCCTCAGCTGATTGGGAAGGACTTATACTATGCAGCGCCACTGTCTATCTGGTGGCAGATCCCCCAGTACCTGCTCATCGGGGTCAGTGAGATCTTTGCCAGCATCCCAG tgagggttccagcactacctctcgatatgtcttccctggcctctttccagGGGTCCTAGAGAAGGAACACCTGCACTATATTGCTGCAAATCAGACAGTACCGCAACTGATCAGCCAGGATTTATACTATGCAGTGCCACTGTCTATTTGGTGGCAGACCCCACAGTACTTACTCATTGGTGTCAGTGAAATCTTTGCCAGCATCCCAGgtaagtcaaatcccccctggggttaccatgttggtctggttatcatgtgg Alignment from Exonerate_coding2genome GAGTCCTGGAGAAAGAACGCTTACAGTACATTGCTGCCAACCAGACAGTGCCTCAGCTGATTGGGAAGGACTTATACTATGCAGCGCCACTGTCTATCTGGTGGCAGATCCCCCAGTACCTGCTCATCGGGGTCAGTGAGATCTTTGCCAGCATCCCAG tgagggttccagcactacctctcgatatgtcttccctggcctctttccagGGGTCCTAGAGAAGGAACACCTGCACTATATTGCTGCAAATCAGACAGTACCGCAACTGATCAGCCAGGATTTATACTATGCAGTGCCACTGTCTATTTGGTGGCAGACCCCACAGTACTTACTCATTGGTGTCAGTGAAATCTTTGCCAGCATCCCAGgtaagtcaaatcccccctggggttaccatgttggtctggttatcatgtgg Alignment from GeneWise GAGTCCTGGAGAAAGAACGCTTACAGTACATTGCTGCCAACCAGACAGTGCCTCAGCTGATTGGGAAGGACTTATACTATGCAGCGCCACTGTCTATCTGGTGGCAGATCCCCCAGTACCTGCTCATCGGGGTCAGTGAGATCTTTGCCAGCATCCCA- tgagggttccagcactacctctcgatatgtcttccctggcctctttccagGGGTCCTAGAGAAGGAACACCTGCACTATATTGCTGCAAATCAGACAGTACCGCAACTGATCAGCCAGGATTTATACTATGCAGTGCCACTGTCTATTTGGTGGCAGACCCCACAGTACTTACTCATTGGTGTCAGTGAAATCTTTGCCAGCATCCCAGgtaagtcaaatcccccctggggttaccatgttggtctggttatcatgtgg #### Slc15a3_ID3032_7 --> 2 - 1 Original Alignment gtCTGGAGTTCGCTTACTCAGAAGCCCCACGCTCCATGCAGGGTGCAATTATGGGCATCTTCTTCTGCCTTTCCGGGGTGGGCTCACTGCTAGGCTCTGGCTTGGTGGCCCTACTGTCTTTTCCTGGGGGCTGGATGTACTGCCCCAAGGACTTTg ctccttgcactctctctagattacaaggtatgtcacttcctcccctgcaggaCTTGAGTTTGCTTACTCAGAAGCTCCACACTACATGCAAGGTGGTATTATGGGTACATTCTTTTGCCTCTCAGGGGTTGGCTCTTTGGTTGGTTCTGGTTTGGTGGCCTTACTATCTTTTCCTGGAGGCTGGACATACTGTGCCAAGGACTTTggtaagtgaaagagcttgtctgagagggctttgtttttcattcatattgaa Alignment from CESAR gtCTGGAGTTCGCTTACTCAGAAGCCCCACGCTCCATGCAGGGTGCAATTATGGGCATCTTCTTCTGCCTTTCCGGGGTGGGCTCACTGCTAGGCTCTGGCTTGGTGGCCCTACTGTCTTTTCCTGGGGGCTGGATGTACTGCCCCAAGGACTTTg ctccttgcactctctctagattacaaggtatgtcacttcctcccctgcaggaCTTGAGTTTGCTTACTCAGAAGCTCCACACTACATGCAAGGTGGTATTATGGGTACATTCTTTTGCCTCTCAGGGGTTGGCTCTTTGGTTGGTTCTGGTTTGGTGGCCTTACTATCTTTTCCTGGAGGCTGGACATACTGTGCCAAGGACTTTggtaagtgaaagagcttgtctgagagggctttgtttttcattcatattgaa Alignment from Spaln_aa2Genome GTCTGGAGTTCGCTTACTCAGAAGCCCCACGCTCCATGCAGGGTGCAATTATGGGCATCTTCTTCTGCCTTTCCGGGGTGGGCTCACTGCTAGGCTCTGGCTTGGTGGCCCTACTGTCTTTTCCTGGGGGCTGGATGTACTGCCCCAAGGACTTTG ctccttgcactctctctagattacaaggtatgtcacttcctcccctgcagGACTTGAGTTTGCTTACTCAGAAGCTCCACACTACATGCAAGGTGGTATTATGGGTACATTCTTTTGCCTCTCAGGGGTTGGCTCTTTGGTTGGTTCTGGTTTGGTGGCCTTACTATCTTTTCCTGGAGGCTGGACATACTGTGCCAAGGACTTTGgtaagtgaaagagcttgtctgagagggctttgtttttcattcatattgaa Alignment from Spaln_nt2Genome GTCTGGAGTTCGCTTACTCAGAAGCCCCACGCTCCATGCAGGGTGCAATTATGGGCATCTTCTTCTGCCTTTCCGGGGTGGGCTCACTGCTAGGCTCTGGCTTGGTGGCCCTACTGTCTTTTCCTGGGGGCTGGATGTACTGCCCCAAGGACTTTG ctccttgcactctctctagattacaaggtatgtcacttcctcccctgcagGACTTGAGTTTGCTTACTCAGAAGCTCCACACTACATGCAAGGTGGTATTATGGGTACATTCTTTTGCCTCTCAGGGGTTGGCTCTTTGGTTGGTTCTGGTTTGGTGGCCTTACTATCTTTTCCTGGAGGCTGGACATACTGTGCCAAGGACTTTGgtaagtgaaagagcttgtctgagagggctttgtttttcattcatattgaa Alignment from Pairagon GTCTGGAGTTCGCTTACTCAGAAGCCCCACGCTCCATGCAGGGTGCAATTATGGGCATCTTCTTCTGCCTTTCCGGGGTGGGCTCACTGCTAGGCTCTGGCTTGGTGGCCCTACTGTCTTTTCCTGGGGGCTGGATGTACTGCCCCAAGGACTTTG ctccttgcactctctctagattacaaggtatgtcacttcctcccctgcagGACTTGAGTTTGCTTACTCAGAAGCTCCACACTACATGCAAGGTGGTATTATGGGTACATTCTTTTGCCTCTCAGGGGTTGGCTCTTTGGTTGGTTCTGGTTTGGTGGCCTTACTATCTTTTCCTGGAGGCTGGACATACTGTGCCAAGGACTTTGgtaagtgaaagagcttgtctgagagggctttgtttttcattcatattgaa Alignment from Exonerate_protein2genome GTCTGGAGTTCGCTTACTCAGAAGCCCCACGCTCCATGCAGGGTGCAATTATGGGCATCTTCTTCTGCCTTTCCGGGGTGGGCTCACTGCTAGGCTCTGGCTTGGTGGCCCTACTGTCTTTTCCTGGGGGCTGGATGTACTGCCCCAAGGACTTTG ctccttgcactctctctagattacaaggtatgtcacttcctcccctgcagGACTTGAGTTTGCTTACTCAGAAGCTCCACACTACATGCAAGGTGGTATTATGGGTACATTCTTTTGCCTCTCAGGGGTTGGCTCTTTGGTTGGTTCTGGTTTGGTGGCCTTACTATCTTTTCCTGGAGGCTGGACATACTGTGCCAAGGACTTTGgtaagtgaaagagcttgtctgagagggctttgtttttcattcatattgaa Alignment from Exonerate_coding2genome GTCTGGAGTTCGCTTACTCAGAAGCCCCACGCTCCATGCAGGGTGCAATTATGGGCATCTTCTTCTGCCTTTCCGGGGTGGGCTCACTGCTAGGCTCTGGCTTGGTGGCCCTACTGTCTTTTCCTGGGGGCTGGATGTACTGCCCCAAGGACTTTG ctccttgcactctctctagattacaaggtatgtcacttcctcccctgcagGACTTGAGTTTGCTTACTCAGAAGCTCCACACTACATGCAAGGTGGTATTATGGGTACATTCTTTTGCCTCTCAGGGGTTGGCTCTTTGGTTGGTTCTGGTTTGGTGGCCTTACTATCTTTTCCTGGAGGCTGGACATACTGTGCCAAGGACTTTGgtaagtgaaagagcttgtctgagagggctttgtttttcattcatattgaa Alignment from GeneWise GTCTGGAGTTCGCTTACTCAGAAGCCCCACGCTCCATGCAGGGTGCAATTATGGGCATCTTCTTCTGCCTTTCCGGGGTGGGCTCACTGCTAGGCTCTGGCTTGGTGGCCCTACTGTCTTTTCCTGGGGGCTGGATGTACTGCCCCAAGGACTTTG ctccttgcactctctctagattacaaggtatgtcacttcctcccctgcagGACTTGAGTTTGCTTACTCAGAAGCTCCACACTACATGCAAGGTGGTATTATGGGTACATTCTTTTGCCTCTCAGGGGTTGGCTCTTTGGTTGGTTCTGGTTTGGTGGCCTTACTATCTTTTCCTGGAGGCTGGACATACTGTGCCAAGGACTTTGgtaagtgaaagagcttgtctgagagggctttgtttttcattcatattgaa #### Slc16a12_ID6975_3 --> 2 - 1 Original Alignment ctCCGCTTGGGAGTGTTGTCAGTAACCAGTTATCCTGTCAAGCGGGGATCATGCTGGGTGGCTTGCTGGCATCTACTGGTTTCATCCTGGGCTCATTTGCCACCAGCTTGAAGCACCTCTACCTCAGCCTGGGAGTTCTTACAg aagacacccaaagactggcttacccacctacctttttccccctctgttagccCCCCTTGGGAGTGTTGTGAGTAACCAGTTATCCTGCCAGGCTGGGATCATGTTGGGTGGCTTGCTATCATACATGGGCTTCATCCTAGGCTCTTTCGCCACCAGCTTGAAGCACCTCTACCTTAGCCTTGGAGTTCTTACAggtgagctgtatatgtggtgatagggccccccagctaacttcctagtatat Alignment from CESAR ctCCGCTTGGGAGTGTTGTCAGTAACCAGTTATCCTGTCAAGCGGGGATCATGCTGGGTGGCTTGCTGGCATCTACTGGTTTCATCCTGGGCTCATTTGCCACCAGCTTGAAGCACCTCTACCTCAGCCTGGGAGTTCTTACAg aagacacccaaagactggcttacccacctacctttttccccctctgttagccCCCCTTGGGAGTGTTGTGAGTAACCAGTTATCCTGCCAGGCTGGGATCATGTTGGGTGGCTTGCTATCATACATGGGCTTCATCCTAGGCTCTTTCGCCACCAGCTTGAAGCACCTCTACCTTAGCCTTGGAGTTCTTACAggtgagctgtatatgtggtgatagggccccccagctaacttcctagtatat Alignment from Spaln_aa2Genome CTCCGCTTGGGAGTGTTGTCAGTAACCAGTTATCCTGTCAAGCGGGGATCATGCTGGGTGGCTTGCTGGCATCTACTGGTTTCATCCTGGGCTCATTTGCCACCAGCTTGAAGCACCTCTACCTCAGCCTGGGAGTTCTTACAG aagacacccaaagactggcttacccacctacctttttccccctctgttagCCCCCCTTGGGAGTGTTGTGAGTAACCAGTTATCCTGCCAGGCTGGGATCATGTTGGGTGGCTTGCTATCATACATGGGCTTCATCCTAGGCTCTTTCGCCACCAGCTTGAAGCACCTCTACCTTAGCCTTGGAGTTCTTACAGgtgagctgtatatgtggtgatagggccccccagctaacttcctagtatat Alignment from Spaln_nt2Genome CTCCGCTTGGGAGTGTTGTCAGTAACCAGTTATCCTGTCAAGCGGGGATCATGCTGGGTGGCTTGCTGGCATCTACTGGTTTCATCCTGGGCTCATTTGCCACCAGCTTGAAGCACCTCTACCTCAGCCTGGGAGTTCTTACAG aagacacccaaagactggcttacccacctacctttttccccctctgttagCCCCCCTTGGGAGTGTTGTGAGTAACCAGTTATCCTGCCAGGCTGGGATCATGTTGGGTGGCTTGCTATCATACATGGGCTTCATCCTAGGCTCTTTCGCCACCAGCTTGAAGCACCTCTACCTTAGCCTTGGAGTTCTTACAGgtgagctgtatatgtggtgatagggccccccagctaacttcctagtatat Alignment from Pairagon CTCCGCTTGGGAGTGTTGTCAGTAACCAGTTATCCTGTCAAGCGGGGATCATGCTGGGTGGCTTGCTGGCATCTACTGGTTTCATCCTGGGCTCATTTGCCACCAGCTTGAAGCACCTCTACCTCAGCCTGGGAGTTCTTACAG aagacacccaaagactggcttacccacctacctttttccccctctgttagCCCCCCTTGGGAGTGTTGTGAGTAACCAGTTATCCTGCCAGGCTGGGATCATGTTGGGTGGCTTGCTATCATACATGGGCTTCATCCTAGGCTCTTTCGCCACCAGCTTGAAGCACCTCTACCTTAGCCTTGGAGTTCTTACAGgtgagctgtatatgtggtgatagggccccccagctaacttcctagtatat Alignment from Exonerate_protein2genome aagacacccaaagactggcttacccacctacctttttccccctctgttagccccccttgggagtgttgtgagtaaccagttatcctgccaggctgggatcatgttgggtggcttgctatcatacatgggcttcatcctaggctctttcgccaccagcttgaagcacctctaccttagccttggagttcttacaggtgagctgtatatgtggtgatagggccccccagctaacttcctagtatat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGCTCCGCTTGGGAGTGTTGTCAGTAACCAGTTATCCTGTCAAGCGGGGATCATGCTGGGTGGCTTGCTGGCATCTACTGGTTTCATCCTGGGCTCATTTGCCACCAGCTTGAAGCACCTCTACCTCAGCCTGGGAGTTCTTACAG aagacacccaaagactggcttacccacctacctttttccccctctgttagCC---CCCCTTGGGAGTGTTGTGAGTAACCAGTTATCCTGCCAGGCTGGGATCATGTTGGGTGGCTTGCTATCATACATGGGCTTCATCCTAGGCTCTTTCGCCACCAGCTTGAAGCACCTCTACCTTAGCCTTGGAGTTCTTACAGgtgagctgtatatgtggtgatagggccccccagctaacttcctagtatat #### Slc18a2_ID12945_12 --> 0 - 1 Original Alignment ATTCCTTTTGCAAAAAATATCTACGGACTCATCGCTCCCAACTTTGGAGTTGGTTTTGCCATTg atctgtgatgaggagttattcaaaaccacctctgccttccctacctgcagATACCATTTGCCAGAAATATATATGGACTTATAGCACCTAATTTTGGAGTCAGTTTTGCCATTggtagagattcacttgtacttcaatacctagtctgaccagcactgattcta Alignment from CESAR ATTCCTTTTGCAAAAAATATCTACGGACTCATCGCTCCCAACTTTGGAGTTGGTTTTGCCATTg atctgtgatgaggagttattcaaaaccacctctgccttccctacctgcagATACCATTTGCCAGAAATATATATGGACTTATAGCACCTAATTTTGGAGTCAGTTTTGCCATTggtagagattcacttgtacttcaatacctagtctgaccagcactgattcta Alignment from Spaln_aa2Genome ATTCCTTTTGCAAAAAATATCTACGGACTCATCGCTCCCAACTTTGGAGTTGGTTTTGCCATTG atctgtgatgaggagttattcaaaaccacctctgccttccctacctgcagATACCATTTGCCAGAAATATATATGGACTTATAGCACCTAATTTTGGAGTCAGTTTTGCCATTGgtagagattcacttgtacttcaatacctagtctgaccagcactgattcta Alignment from Spaln_nt2Genome ATTCCTTTTGCAAAAAATATCTACGGACTCATCGCTCCCAACTTTGGAGTTGGTTTTGCCATTG atctgtgatgaggagttattcaaaaccacctctgccttccctacctgcagATACCATTTGCCAGAAATATATATGGACTTATAGCACCTAATTTTGGAGTCAGTTTTGCCATTGgtagagattcacttgtacttcaatacctagtctgaccagcactgattcta Alignment from Pairagon ATTCCTTTTGCAAAAAATATCTACGGACTCATCGCTCCCAACTTTGGAGTTGGTTTTGCCATTG atctgtgatgaggagttattcaaaaccacctctgccttccctacctgcagATACCATTTGCCAGAAATATATATGGACTTATAGCACCTAATTTTGGAGTCAGTTTTGCCATTGgtagagattcacttgtacttcaatacctagtctgaccagcactgattcta Alignment from Exonerate_protein2genome ATTCCTTTTGCAAAAAATATCTACGGACTCATCGCTCCCAACTTTGGAGTTGGTTTTGCCATTG atctgtgatgaggagttattcaaaaccacctctgccttccctacctgcagATACCATTTGCCAGAAATATATATGGACTTATAGCACCTAATTTTGGAGTCAGTTTTGCCATTGgtagagattcacttgtacttcaatacctagtctgaccagcactgattcta Alignment from Exonerate_coding2genome ATTCCTTTTGCAAAAAATATCTACGGACTCATCGCTCCCAACTTTGGAGTTGGTTTTGCCATTG atctgtgatgaggagttattcaaaaccacctctgccttccctacctgcagATACCATTTGCCAGAAATATATATGGACTTATAGCACCTAATTTTGGAGTCAGTTTTGCCATTGgtagagattcacttgtacttcaatacctagtctgaccagcactgattcta Alignment from GeneWise ATTCCTTTTGCAAAAAATATCTACGGACTCATCGCTCCCAACTTTGGAGTTGGTTTTGCCATTG atctgtgatgaggagttattcaaaaccacctctgccttccctacctgcagATACCATTTGCCAGAAATATATATGGACTTATAGCACCTAATTTTGGAGTCAGTTTTGCCATTGgtagagattcacttgtacttcaatacctagtctgaccagcactgattcta #### Slc22a12_ID1791_6 --> 0 - 2 Original Alignment GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCtg ctgggggagaaactcgaaatgaaaatgaaccactacccctctccctttagGTCCTATGGTCAGCTATGGACAAAGAACCAAGCAGGGACCAGGCCTGCGCCAGTCTTAGCACTTTACTCCACACACCTGGACTGCGTCACCGTAGTATTATCTCTATGCTGTGTctgtatgatcatcactacaatggtttgcaagtaggagaagttccccagtcat Alignment from CESAR GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCtg ctgggggagaaactcgaaatgaaaatgaaccactacccctctccctttagGTCCTATGGTCAGCTATGGACAAAGAACCAAGCAGGGACCAGGCCTGCGCCAGTCTTAGCACTTTACTCCACACACCTGGACTGCGTCACCGTAGTATTATCTCTATGCTGTGTctgtatgatcatcactacaatggtttgcaagtaggagaagttccccagtcat Alignment from Spaln_aa2Genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG ctgggggagaaactcgaaatgaaaatgaaccactacccctctccctttagGTCCTATGGTCAGCTATGGACAAAGAACCAAGCAGGGACCAGGCCTGCGCCAGTCTTAGCACTTTACTCCACACACCTGGACTGCGTCACCGTAGTATTATCTCTATGCTGTGTCTgtatgatcatcactacaatggtttgcaagtaggagaagttccccagtcat Alignment from Spaln_nt2Genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG ctgggggagaaactcgaaatgaaaatgaaccactacccctctccctttagGTCCTATGGTCAGCTATGGACAAAGAACCAAGCAGGGACCAGGCCTGCGCCAGTCTTAGCACTTTACTCCACACACCTGGACTGCGTCACCGTAGTATTATCTCTATGCTGTGTCTgtatgatcatcactacaatggtttgcaagtaggagaagttccccagtcat Alignment from Pairagon GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG ctgggggagaaactcgaaatgaaaatgaaccactacccctctccctttagGTCCTATGGTCAGCTATGGACAAAGAACCAAGCAGGGACCAGGCCTGCGCCAGTCTTAGCACTTTACTCCACACACCTGGACTGCGTCACCGTAGTATTATCTCTATGCTGTGTCTgtatgatcatcactacaatggtttgcaagtaggagaagttccccagtcat Alignment from Exonerate_protein2genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG ctgggggagaaactcgaaatgaaaatgaaccactacccctctccctttagGTCCTATGGTCAGCTATGGACAAAGAACCAAGCAGGGACCAGGCCTGCGCCAGTCTTAGCACTTTACTCCACACACCTGGACTGCGTCACCGTAGTATTATCTCTATGCTGTGTCTgtatgatcatcactacaatggtttgcaagtaggagaagttccccagtcat Alignment from Exonerate_coding2genome ctgggggagaaactcgaaatgaaaatgaaccactacccctctccctttaggtcctatggtcagctatggacaaagaaccaagcagggaccaggcctgcgccagtcttagcactttactccacacacctggactgcgtcaccgtagtattatctctatgctgtgtctgtatgatcatcactacaatggtttgcaagtaggagaagttccccagtcat Alignment from GeneWise GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG ctgggggagaaactcgaaatgaaaatgaaccactacccctctccctttagGTCCTATGGTCAGCTATGGACAAAGAACCAAGCAGGGACCAGGCCTGCGCCAGTCTTAGCACTTTACTCCACACACCTGGACTGCGTCACCGTAGTATTATCTCTATGCTGTGTCTgtatgatcatcactacaatggtttgcaagtaggagaagttccccagtcat #### Slc22a20_ID1344_9 --> 1 - 2 Original Alignment gCAGATGGGGATGGGATTTGCTTCTGTCAATGCCCGCCTCGGAGGCTTGGTGGCACCCCTGATCACCACACTTGGCGAGATCAGTCCAGTTCTGCCACCTGTATCCTTTGGTGCCACTTCAGTCTTGGCTGGAATGGCTGTCGCCTGCTTCCTGACTGAGACCCGCAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGAcg gacttaatcatctctggaccaggtcctttgcctctttctcaccatctcaggCAAATGGGTATGGAGTTTGCTTCTGTCAATGCT---ATTGGAGGTTTGGTGCCCCCATTGATCACATCACTAGGCGAAATCAGCCCAGTACTGCCACCAGTATTCTCTGGTGCTACATCTGTTCTAGCCGGCATGGCTGTAGCTTGCTTCCTAACG---ACCCGTAATGTGCCACTAGTCGAAATTATCACTGCAATGGAGAGAcggtaagcacactcttatgatgaccggcaacaattgcctcatattgacgtac Alignment from CESAR gCAGATGGGGATGGGATTTGCTTCTGTCAATGCCCGCCTCGGAGGCTTGGTGGCACCCCTGATCACCACACTTGGCGAGATCAGTCCAGTTCTGCCACCTGTATCCTTTGGTGCCACTTCAGTCTTGGCTGGAATGGCTGTCGCCTGCTTCCTGACTGAGACCCGCAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGAcg gacttaatcatctctggaccaggtcctttgcctctttctcaccatctcaggCAAATGGGTATGGAGTTTGCTTCTGTCAATGCT---ATTGGAGGTTTGGTGCCCCCATTGATCACATCACTAGGCGAAATCAGCCCAGTACTGCCACCAGTATTCTCTGGTGCTACATCTGTTCTAGCCGGCATGGCTGTAGCTTGCTTCCTAACG---ACCCGTAATGTGCCACTAGTCGAAATTATCACTGCAATGGAGAGAcggtaagcacactcttatgatgaccggcaacaattgcctcatattgacgtac Alignment from Spaln_aa2Genome GCAGATGGGGATGGGATTTGCTTCTGTCAATGCCCGCCTCGGAGGCTTGGTGGCACCCCTGATCACCACACTTGGCGAGATCAGTCCAGTTCTGCCACCTGTATCCTTTGGTGCCACTTCAGTCTTGGCTGGAATGGCTGTCGCCTGCTTCCTGACTGAGACCCGCAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGACG gacttaatcatctctggaccaggtcctttgcctctttctcaccatctcagGCAAATGGGTATGGAGTTTGCTTCTGTCAATGCT---ATTGGAGGTTTGGTGCCCCCATTGATCACATCACTAGGCGAAATCAGCCCAGTACTGCCACCAGTATTCTCTGGTGCTACATCTGTTCTAGCCGGCATGGCTGTAGCTTGCTTCCTAACG---ACCCGTAATGTGCCACTAGTCGAAATTATCACTGCAATGGAGAGACGgtaagcacactcttatgatgaccggcaacaattgcctcatattgacgtac Alignment from Spaln_nt2Genome GCAGATGGGGATGGGATTTGCTTCTGTCAATGCCCGCCTCGGAGGCTTGGTGGCACCCCTGATCACCACACTTGGCGAGATCAGTCCAGTTCTGCCACCTGTATCCTTTGGTGCCACTTCAGTCTTGGCTGGAATGGCTGTCGCCTGCTTCCTGACTGAGACCCGCAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGACG gacttaatcatctctggaccaggtcctttgcctctttctcaccatctcagGCAAATGGGTATGGAGTTTGCTTCTGTCAATGC---TATTGGAGGTTTGGTGCCCCCATTGATCACATCACTAGGCGAAATCAGCCCAGTACTGCCACCAGTATTCTCTGGTGCTACATCTGTTCTAGCCGGCATGGCTGTAGCTTGCTTCCTAAC---GACCCGTAATGTGCCACTAGTCGAAATTATCACTGCAATGGAGAGACGgtaagcacactcttatgatgaccggcaacaattgcctcatattgacgtac Alignment from Pairagon GCAGATGGGGATGGGATTTGCTTCTGTCAATGCCCGCCTCGGAGGCTTGGTGGCACCCCTGATCACCACACTTGGCGAGATCAGTCCAGTTCTGCCACCTGTATCCTTTGGTGCCACTTCAGTCTTGGCTGGAATGGCTGTCGCCTGCTTCCTGACTGAGACCCGCAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGACG gacttaatcatctctggaccaggtcctttgcctctttctcaccatctcagGCAAATGGGTATGGAGTTTGCTTCTGTCAATGC---TATTGGAGGTTTGGTGCCCCCATTGATCACATCACTAGGCGAAATCAGCCCAGTACTGCCACCAGTATTCTCTGGTGCTACATCTGTTCTAGCCGGCATGGCTGTAGCTTGCTTCCTAAC---GACCCGTAATGTGCCACTAGTCGAAATTATCACTGCAATGGAGAGACGgtaagcacactcttatgatgaccggcaacaattgcctcatattgacgtac Alignment from Exonerate_protein2genome GATCAGGCAGATGGGGATGGGATTTGCTTCTGTCAATGCCCGCCTCGGAGGCTTGGTGGCACCCCTGATCACCACACTTGGCGAGATCAGTCCAGTTCTGCCACCTGTATCCTTTGGTGCCACTTCAGTCTTGGCTGGAATGGCTGTCGCCTGCTTCCTGACTGAGACCCGCAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGACG gacttaatcatctctggaccaggtcctttgcctctttctcaccaTCTCAGGCAAATGGGTATGGAGTTTGCTTCTGTCAATGCT---ATTGGAGGTTTGGTGCCCCCATTGATCACATCACTAGGCGAAATCAGCCCAGTACTGCCACCAGTATTCTCTGGTGCTACATCTGTTCTAGCCGGCATGGCTGTAGCTTGCTTCCTAACG---ACCCGTAATGTGCCACTAGTCGAAATTATCACTGCAATGGAGAGACGgtaagcacactcttatgatgaccggcaacaattgcctcatattgacgtac Alignment from Exonerate_coding2genome gacttaatcatctctggaccaggtcctttgcctctttctcaccatctcaggcaaatgggtatggagtttgcttctgtcaatgctattggaggtttggtgcccccattgatcacatcactaggcgaaatcagcccagtactgccaccagtattctctggtgctacatctgttctagccggcatggctgtagcttgcttcctaacgacccgtaatgtgccactagtcgaaattatcactgcaatggagagacggtaagcacactcttatgatgaccggcaacaattgcctcatattgacgtac Alignment from GeneWise ------------------------------------------GAGATCAGGCAGATGGGGATGGGATTTGCTTCTGTCAATGCCCGCCTCGGAGGCTTGGTGGCACCCCTGATCACCACACTTGGCGAGATCAGTCCAGTTCTGCCACCTGTATCCTTTGGTGCCACTTCAGTCTTGGCTGGAATGGCTGTCGCCTGCTTCCTGACTGAGACCCGCAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGACG GACTTAATCATCTCTGGACCAGGTCCTTTGCCTCTTTCTCACCATCTCAGGCAAATGGGTATGGAGTTTGCTTCTGTCAATGCT---ATTGGAGGTTTGGTGCCCCCATTGATCACATCACTAGGCGAAATCAGCCCAGTACTGCCACCAGTATTCTCTGGTGCTACATCTGTTCTAGCCGGCATGGCTGTAGCTTGCTTCCTAACG---ACCCGTAATGTGCCACTAGTCGAAATTATCACTGCAATGGAGAGACGgtaagcacactcttatgatgaccggcaacaattgcctcatattgacgtac #### Slc22a20_ID1350_3 --> 1 - 1 Original Alignment gTTGGGTCGCAAGGCCCCACTGGTGTGGTCGTACCTGCAGCTGGCAGTTTCGGGGGCTGCCACAGCGTATGTGGGCTCCTTCAGTGCCTACTGCGTCTTCCGCTTCCTGATGGGCATGACCTTCTCCGGCATCATCCTTAACTCCCTCTCCCTGg ggaggcaaccatttttcaccaatacttgtggtttctgttgtgttttccagaTTAGGTCACAATGCACCGTTGGTATGGTTGTATTTACATATTGCAGTTTCAGGGGCTGCGACAGCATATTTTGGTTTGTTCAGTGTATACTGCGTTTTCCGCTTCTTGATGGGCATGACCTTCTCTGGTGTTATTCTTAACTCCCTCTCATTGggtgagagcctgcagtcaccacatgatgaggattcacagggtcttatttga Alignment from CESAR gTTGGGTCGCAAGGCCCCACTGGTGTGGTCGTACCTGCAGCTGGCAGTTTCGGGGGCTGCCACAGCGTATGTGGGCTCCTTCAGTGCCTACTGCGTCTTCCGCTTCCTGATGGGCATGACCTTCTCCGGCATCATCCTTAACTCCCTCTCCCTGg ggaggcaaccatttttcaccaatacttgtggtttctgttgtgttttccagaTTAGGTCACAATGCACCGTTGGTATGGTTGTATTTACATATTGCAGTTTCAGGGGCTGCGACAGCATATTTTGGTTTGTTCAGTGTATACTGCGTTTTCCGCTTCTTGATGGGCATGACCTTCTCTGGTGTTATTCTTAACTCCCTCTCATTGggtgagagcctgcagtcaccacatgatgaggattcacagggtcttatttga Alignment from Spaln_aa2Genome GTTGGGTCGCAAGGCCCCACTGGTGTGGTCGTACCTGCAGCTGGCAGTTTCGGGGGCTGCCACAGCGTATGTGGGCTCCTTCAGTGCCTACTGCGTCTTCCGCTTCCTGATGGGCATGACCTTCTCCGGCATCATCCTTAACTCCCTCTCCCTGG ggaggcaaccatttttcaccaatacttgtggtttctgttgtgttttccagATTAGGTCACAATGCACCGTTGGTATGGTTGTATTTACATATTGCAGTTTCAGGGGCTGCGACAGCATATTTTGGTTTGTTCAGTGTATACTGCGTTTTCCGCTTCTTGATGGGCATGACCTTCTCTGGTGTTATTCTTAACTCCCTCTCATTGGgtgagagcctgcagtcaccacatgatgaggattcacagggtcttatttga Alignment from Spaln_nt2Genome GTTGGGTCGCAAGGCCCCACTGGTGTGGTCGTACCTGCAGCTGGCAGTTTCGGGGGCTGCCACAGCGTATGTGGGCTCCTTCAGTGCCTACTGCGTCTTCCGCTTCCTGATGGGCATGACCTTCTCCGGCATCATCCTTAACTCCCTCTCCCTGG ggaggcaaccatttttcaccaatacttgtggtttctgttgtgttttccagATTAGGTCACAATGCACCGTTGGTATGGTTGTATTTACATATTGCAGTTTCAGGGGCTGCGACAGCATATTTTGGTTTGTTCAGTGTATACTGCGTTTTCCGCTTCTTGATGGGCATGACCTTCTCTGGTGTTATTCTTAACTCCCTCTCATTGGgtgagagcctgcagtcaccacatgatgaggattcacagggtcttatttga Alignment from Pairagon GTTGGGTCGCAAGGCCCCACTGGTGTGGTCGTACCTGCAGCTGGCAGTTTCGGGGGCTGCCACAGCGTATGTGGGCTCCTTCAGTGCCTACTGCGTCTTCCGCTTCCTGATGGGCATGACCTTCTCCGGCATCATCCTTAACTCCCTCTCCCTGG ggaggcaaccatttttcaccaatacttgtggtttctgttgtgttttccagATTAGGTCACAATGCACCGTTGGTATGGTTGTATTTACATATTGCAGTTTCAGGGGCTGCGACAGCATATTTTGGTTTGTTCAGTGTATACTGCGTTTTCCGCTTCTTGATGGGCATGACCTTCTCTGGTGTTATTCTTAACTCCCTCTCATTGGgtgagagcctgcagtcaccacatgatgaggattcacagggtcttatttga Alignment from Exonerate_protein2genome GTTGGGTCGCAAGGCCCCACTGGTGTGGTCGTACCTGCAGCTGGCAGTTTCGGGGGCTGCCACAGCGTATGTGGGCTCCTTCAGTGCCTACTGCGTCTTCCGCTTCCTGATGGGCATGACCTTCTCCGGCATCATCCTTAACTCCCTCTCCCTGG ggaggcaaccatttttcaccaatacttgtggtttctgttgtgttttccagATTAGGTCACAATGCACCGTTGGTATGGTTGTATTTACATATTGCAGTTTCAGGGGCTGCGACAGCATATTTTGGTTTGTTCAGTGTATACTGCGTTTTCCGCTTCTTGATGGGCATGACCTTCTCTGGTGTTATTCTTAACTCCCTCTCATTGGgtgagagcctgcagtcaccacatgatgaggattcacagggtcttatttga Alignment from Exonerate_coding2genome GTTGGGTCGCAAGGCCCCACTGGTGTGGTCGTACCTGCAGCTGGCAGTTTCGGGGGCTGCCACAGCGTATGTGGGCTCCTTCAGTGCCTACTGCGTCTTCCGCTTCCTGATGGGCATGACCTTCTCCGGCATCATCCTTAACTCCCTCTCCCTGG ggaggcaaccatttttcaccaatacttgtggtttctgttgtgttttccagATTAGGTCACAATGCACCGTTGGTATGGTTGTATTTACATATTGCAGTTTCAGGGGCTGCGACAGCATATTTTGGTTTGTTCAGTGTATACTGCGTTTTCCGCTTCTTGATGGGCATGACCTTCTCTGGTGTTATTCTTAACTCCCTCTCATTGGgtgagagcctgcagtcaccacatgatgaggattcacagggtcttatttga Alignment from GeneWise GTTGGGTCGCAAGGCCCCACTGGTGTGGTCGTACCTGCAGCTGGCAGTTTCGGGGGCTGCCACAGCGTATGTGGGCTCCTTCAGTGCCTACTGCGTCTTCCGCTTCCTGATGGGCATGACCTTCTCCGGCATCATCCTTAACTCCCTCTCCCTGG ggaggcaaccatttttcaccaatacttgtggtttctgttgtgttttccagATTAGGTCACAATGCACCGTTGGTATGGTTGTATTTACATATTGCAGTTTCAGGGGCTGCGACAGCATATTTTGGTTTGTTCAGTGTATACTGCGTTTTCCGCTTCTTGATGGGCATGACCTTCTCTGGTGTTATTCTTAACTCCCTCTCATTGGgtgagagcctgcagtcaccacatgatgaggattcacagggtcttatttga #### Slc22a26_ID2216_9 --> 1 - 2 Original Alignment gGCAACAGCATTAGGAGTCATTGGAATTTGTGGTGGTGTGGGGGCAGCCCTGTCTCCCCTTATTATGATCCTCACGCTGTACTCTGCCTCCTTGCCCTGGATCATCTATGGAGTCCTCTCCATCCTTGGTGGCCTTCTTCCCTTGATCCTTCCTGAAACCAAGAATCAGCCTCTGCCTGACTCCATCCAAGATGTAGAATGTgg gtggtggcacagacaaaggtggatgaagctgaccacacctatccctccaggGCTACAACATTAGGAGTTGTTGGAGTCTGTGGTGGTGTGGGAGCAGCCCTGTCTCCTCTTATCATGATACTCACATTGTACTCGGCGTCTTTCTCCTGGATCATCTATGAGGTGCTGTCCATCCTTGGTGGTCTTCTCCCCTTGATCCTTCCTGAGACTAAGAATCAGCCTTGGCCTGATTCCATACAAGATGTAGAATGTgggtatgtagattctgtggcctgctcagtgatacatacagaagggatgatag Alignment from CESAR gGCAACAGCATTAGGAGTCATTGGAATTTGTGGTGGTGTGGGGGCAGCCCTGTCTCCCCTTATTATGATCCTCACGCTGTACTCTGCCTCCTTGCCCTGGATCATCTATGGAGTCCTCTCCATCCTTGGTGGCCTTCTTCCCTTGATCCTTCCTGAAACCAAGAATCAGCCTCTGCCTGACTCCATCCAAGATGTAGAATGTgg gtggtggcacagacaaaggtggatgaagctgaccacacctatccctccaggGCTACAACATTAGGAGTTGTTGGAGTCTGTGGTGGTGTGGGAGCAGCCCTGTCTCCTCTTATCATGATACTCACATTGTACTCGGCGTCTTTCTCCTGGATCATCTATGAGGTGCTGTCCATCCTTGGTGGTCTTCTCCCCTTGATCCTTCCTGAGACTAAGAATCAGCCTTGGCCTGATTCCATACAAGATGTAGAATGTgggtatgtagattctgtggcctgctcagtgatacatacagaagggatgatag Alignment from Spaln_aa2Genome GGCAACAGCATTAGGAGTCATTGGAATTTGTGGTGGTGTGGGGGCAGCCCTGTCTCCCCTTATTATGATCCTCACGCTGTACTCTGCCTCCTTGCCCTGGATCATCTATGGAGTCCTCTCCATCCTTGGTGGCCTTCTTCCCTTGATCCTTCCTGAAACCAAGAATCAGCCTCTGCCTGACTCCATCCAAGATGTAGAATGTGG gtggtggcacagacaaaggtggatgaagctgaccacacctatccctccagGGCTACAACATTAGGAGTTGTTGGAGTCTGTGGTGGTGTGGGAGCAGCCCTGTCTCCTCTTATCATGATACTCACATTGTACTCGGCGTCTTTCTCCTGGATCATCTATGAGGTGCTGTCCATCCTTGGTGGTCTTCTCCCCTTGATCCTTCCTGAGACTAAGAATCAGCCTTGGCCTGATTCCATACAAGATGTAGAATGTGGgtatgtagattctgtggcctgctcagtgatacatacagaagggatgatag Alignment from Spaln_nt2Genome GGCAACAGCATTAGGAGTCATTGGAATTTGTGGTGGTGTGGGGGCAGCCCTGTCTCCCCTTATTATGATCCTCACGCTGTACTCTGCCTCCTTGCCCTGGATCATCTATGGAGTCCTCTCCATCCTTGGTGGCCTTCTTCCCTTGATCCTTCCTGAAACCAAGAATCAGCCTCTGCCTGACTCCATCCAAGATGTAGAATGTGG gtggtggcacagacaaaggtggatgaagctgaccacacctatccctccagGGCTACAACATTAGGAGTTGTTGGAGTCTGTGGTGGTGTGGGAGCAGCCCTGTCTCCTCTTATCATGATACTCACATTGTACTCGGCGTCTTTCTCCTGGATCATCTATGAGGTGCTGTCCATCCTTGGTGGTCTTCTCCCCTTGATCCTTCCTGAGACTAAGAATCAGCCTTGGCCTGATTCCATACAAGATGTAGAATGTGGgtatgtagattctgtggcctgctcagtgatacatacagaagggatgatag Alignment from Pairagon GGCAACAGCATTAGGAGTCATTGGAATTTGTGGTGGTGTGGGGGCAGCCCTGTCTCCCCTTATTATGATCCTCACGCTGTACTCTGCCTCCTTGCCCTGGATCATCTATGGAGTCCTCTCCATCCTTGGTGGCCTTCTTCCCTTGATCCTTCCTGAAACCAAGAATCAGCCTCTGCCTGACTCCATCCAAGATGTAGAATGTGG gtggtggcacagacaaaggtggatgaagctgaccacacctatccctccagGGCTACAACATTAGGAGTTGTTGGAGTCTGTGGTGGTGTGGGAGCAGCCCTGTCTCCTCTTATCATGATACTCACATTGTACTCGGCGTCTTTCTCCTGGATCATCTATGAGGTGCTGTCCATCCTTGGTGGTCTTCTCCCCTTGATCCTTCCTGAGACTAAGAATCAGCCTTGGCCTGATTCCATACAAGATGTAGAATGTGGgtatgtagattctgtggcctgctcagtgatacatacagaagggatgatag Alignment from Exonerate_protein2genome GGCAACAGCATTAGGAGTCATTGGAATTTGTGGTGGTGTGGGGGCAGCCCTGTCTCCCCTTATTATGATCCTCACGCTGTACTCTGCCTCCTTGCCCTGGATCATCTATGGAGTCCTCTCCATCCTTGGTGGCCTTCTTCCCTTGATCCTTCCTGAAACCAAGAATCAGCCTCTGCCTGACTCCATCCAAGATGTAGAATGTGG gtggtggcacagacaaaggtggatgaagctgaccacacctatccctccagGGCTACAACATTAGGAGTTGTTGGAGTCTGTGGTGGTGTGGGAGCAGCCCTGTCTCCTCTTATCATGATACTCACATTGTACTCGGCGTCTTTCTCCTGGATCATCTATGAGGTGCTGTCCATCCTTGGTGGTCTTCTCCCCTTGATCCTTCCTGAGACTAAGAATCAGCCTTGGCCTGATTCCATACAAGATGTAGAATGTGGgtatgtagattctgtggcctgctcagtgatacatacagaagggatgatag Alignment from Exonerate_coding2genome GGCAACAGCATTAGGAGTCATTGGAATTTGTGGTGGTGTGGGGGCAGCCCTGTCTCCCCTTATTATGATCCTCACGCTGTACTCTGCCTCCTTGCCCTGGATCATCTATGGAGTCCTCTCCATCCTTGGTGGCCTTCTTCCCTTGATCCTTCCTGAAACCAAGAATCAGCCTCTGCCTGACTCCATCCAAGATGTAGAATGTGG gtggtggcacagacaaaggtggatgaagctgaccacacctatccctccagGGCTACAACATTAGGAGTTGTTGGAGTCTGTGGTGGTGTGGGAGCAGCCCTGTCTCCTCTTATCATGATACTCACATTGTACTCGGCGTCTTTCTCCTGGATCATCTATGAGGTGCTGTCCATCCTTGGTGGTCTTCTCCCCTTGATCCTTCCTGAGACTAAGAATCAGCCTTGGCCTGATTCCATACAAGATGTAGAATGTGGgtatgtagattctgtggcctgctcagtgatacatacagaagggatgatag Alignment from GeneWise GGCAACAGCATTAGGAGTCATTGGAATTTGTGGTGGTGTGGGGGCAGCCCTGTCTCCCCTTATTATGATCCTCACGCTGTACTCTGCCTCCTTGCCCTGGATCATCTATGGAGTCCTCTCCATCCTTGGTGGCCTTCTTCCCTTGATCCTTCCTGAAACCAAGAATCAGCCTCTGCCTGACTCCATCCAAGATGTAGAATGTGG gtggtggcacagacaaaggtggatgaagctgaccacacctatccctccagGGCTACAACATTAGGAGTTGTTGGAGTCTGTGGTGGTGTGGGAGCAGCCCTGTCTCCTCTTATCATGATACTCACATTGTACTCGGCGTCTTTCTCCTGGATCATCTATGAGGTGCTGTCCATCCTTGGTGGTCTTCTCCCCTTGATCCTTCCTGAGACTAAGAATCAGCCTTGGCCTGATTCCATACAAGATGTAGAATGTGGgtatgtagattctgtggcctgctcagtgatacatacagaagggatgatag #### Slc22a28_ID2244_7 --> 1 - 1 Original Alignment aTATTTATTTACAGTATCTATTTTTGGCCTATCACTTCACCTCCAACACCTGAGTACTAATATTATCCTGTTGCGGTTTCTCAGTAGTGCATTGGGCATACTAATTAGTGTTATTGGACATTTTGTTCTTAATCACATGGGACGTAGAATAACCCAGCTGGTTCTCATGTCCCTGAGGGGAATCTTCATGTTGACTGCTGTATTTGTACCTCAAg actcaggagtacctgcaaaacacgccttctggcttttcctgtttctgcagaTACTTGTTTACAGTGTCTATCTTTGACCTGTCACTTCACCTCCAACACCTTAGTACTAATATTATTCTGTTGCGGTTTCTAAGCAGTGCACTGGGGATTCAAATTAGTGTTATTGGACATTTTGTCCTTAATCACATGGGACGCAAAATAATCCAGTTGGTTCTAATGTCCCTGAGGGGAATTTTCATGTTGACAGCTGTATTTGTGCCTCAAggtaagctgcggtagaattaggcatacaaagaaatccagaccccataccaa Alignment from CESAR aTATTTATTTACAGTATCTATTTTTGGCCTATCACTTCACCTCCAACACCTGAGTACTAATATTATCCTGTTGCGGTTTCTCAGTAGTGCATTGGGCATACTAATTAGTGTTATTGGACATTTTGTTCTTAATCACATGGGACGTAGAATAACCCAGCTGGTTCTCATGTCCCTGAGGGGAATCTTCATGTTGACTGCTGTATTTGTACCTCAAg actcaggagtacctgcaaaacacgccttctggcttttcctgtttctgcagaTACTTGTTTACAGTGTCTATCTTTGACCTGTCACTTCACCTCCAACACCTTAGTACTAATATTATTCTGTTGCGGTTTCTAAGCAGTGCACTGGGGATTCAAATTAGTGTTATTGGACATTTTGTCCTTAATCACATGGGACGCAAAATAATCCAGTTGGTTCTAATGTCCCTGAGGGGAATTTTCATGTTGACAGCTGTATTTGTGCCTCAAggtaagctgcggtagaattaggcatacaaagaaatccagaccccataccaa Alignment from Spaln_aa2Genome ATATTTATTTACAGTATCTATTTTTGGCCTATCACTTCACCTCCAACACCTGAGTACTAATATTATCCTGTTGCGGTTTCTCAGTAGTGCATTGGGCATACTAATTAGTGTTATTGGACATTTTGTTCTTAATCACATGGGACGTAGAATAACCCAGCTGGTTCTCATGTCCCTGAGGGGAATCTTCATGTTGACTGCTGTATTTGTACCTCAAG actcaggagtacctgcaaaacacgccttctggcttttcctgtttctgcagATACTTGTTTACAGTGTCTATCTTTGACCTGTCACTTCACCTCCAACACCTTAGTACTAATATTATTCTGTTGCGGTTTCTAAGCAGTGCACTGGGGATTCAAATTAGTGTTATTGGACATTTTGTCCTTAATCACATGGGACGCAAAATAATCCAGTTGGTTCTAATGTCCCTGAGGGGAATTTTCATGTTGACAGCTGTATTTGTGCCTCAAGgtaagctgcggtagaattaggcatacaaagaaatccagaccccataccaa Alignment from Spaln_nt2Genome ATATTTATTTACAGTATCTATTTTTGGCCTATCACTTCACCTCCAACACCTGAGTACTAATATTATCCTGTTGCGGTTTCTCAGTAGTGCATTGGGCATACTAATTAGTGTTATTGGACATTTTGTTCTTAATCACATGGGACGTAGAATAACCCAGCTGGTTCTCATGTCCCTGAGGGGAATCTTCATGTTGACTGCTGTATTTGTACCTCAAG actcaggagtacctgcaaaacacgccttctggcttttcctgtttctgcagATACTTGTTTACAGTGTCTATCTTTGACCTGTCACTTCACCTCCAACACCTTAGTACTAATATTATTCTGTTGCGGTTTCTAAGCAGTGCACTGGGGATTCAAATTAGTGTTATTGGACATTTTGTCCTTAATCACATGGGACGCAAAATAATCCAGTTGGTTCTAATGTCCCTGAGGGGAATTTTCATGTTGACAGCTGTATTTGTGCCTCAAGgtaagctgcggtagaattaggcatacaaagaaatccagaccccataccaa Alignment from Pairagon ATATTTATTTACAGTATCTATTTTTGGCCTATCACTTCACCTCCAACACCTGAGTACTAATATTATCCTGTTGCGGTTTCTCAGTAGTGCATTGGGCATACTAATTAGTGTTATTGGACATTTTGTTCTTAATCACATGGGACGTAGAATAACCCAGCTGGTTCTCATGTCCCTGAGGGGAATCTTCATGTTGACTGCTGTATTTGTACCTCAAG actcaggagtacctgcaaaacacgccttctggcttttcctgtttctgcagATACTTGTTTACAGTGTCTATCTTTGACCTGTCACTTCACCTCCAACACCTTAGTACTAATATTATTCTGTTGCGGTTTCTAAGCAGTGCACTGGGGATTCAAATTAGTGTTATTGGACATTTTGTCCTTAATCACATGGGACGCAAAATAATCCAGTTGGTTCTAATGTCCCTGAGGGGAATTTTCATGTTGACAGCTGTATTTGTGCCTCAAGgtaagctgcggtagaattaggcatacaaagaaatccagaccccataccaa Alignment from Exonerate_protein2genome ATATTTATTTACAGTATCTATTTTTGGCCTATCACTTCACCTCCAACACCTGAGTACTAATATTATCCTGTTGCGGTTTCTCAGTAGTGCATTGGGCATACTAATTAGTGTTATTGGACATTTTGTTCTTAATCACATGGGACGTAGAATAACCCAGCTGGTTCTCATGTCCCTGAGGGGAATCTTCATGTTGACTGCTGTATTTGTACCTCAAG actcaggagtacctgcaaaacacgccttctggcttttcctgtttctgcagATACTTGTTTACAGTGTCTATCTTTGACCTGTCACTTCACCTCCAACACCTTAGTACTAATATTATTCTGTTGCGGTTTCTAAGCAGTGCACTGGGGATTCAAATTAGTGTTATTGGACATTTTGTCCTTAATCACATGGGACGCAAAATAATCCAGTTGGTTCTAATGTCCCTGAGGGGAATTTTCATGTTGACAGCTGTATTTGTGCCTCAAGgtaagctgcggtagaattaggcatacaaagaaatccagaccccataccaa Alignment from Exonerate_coding2genome ATATTTATTTACAGTATCTATTTTTGGCCTATCACTTCACCTCCAACACCTGAGTACTAATATTATCCTGTTGCGGTTTCTCAGTAGTGCATTGGGCATACTAATTAGTGTTATTGGACATTTTGTTCTTAATCACATGGGACGTAGAATAACCCAGCTGGTTCTCATGTCCCTGAGGGGAATCTTCATGTTGACTGCTGTATTTGTACCTCAAG actcaggagtacctgcaaaacacgccttctggcttttcctgtttctgcagATACTTGTTTACAGTGTCTATCTTTGACCTGTCACTTCACCTCCAACACCTTAGTACTAATATTATTCTGTTGCGGTTTCTAAGCAGTGCACTGGGGATTCAAATTAGTGTTATTGGACATTTTGTCCTTAATCACATGGGACGCAAAATAATCCAGTTGGTTCTAATGTCCCTGAGGGGAATTTTCATGTTGACAGCTGTATTTGTGCCTCAAGgtaagctgcggtagaattaggcatacaaagaaatccagaccccataccaa Alignment from GeneWise ATATTTATTTACAGTATCTATTTTTGGCCTATCACTTCACCTCCAACACCTGAGTACTAATATTATCCTGTTGCGGTTTCTCAGTAGTGCATTGGGCATACTAATTAGTGTTATTGGACATTTTGTTCTTAATCACATGGGACGTAGAATAACCCAGCTGGTTCTCATGTCCCTGAGGGGAATCTTCATGTTGACTGCTGTATTTGTACCTCAAG actcaggagtacctgcaaaacacgccttctggcttttcctgtttctgcagATACTTGTTTACAGTGTCTATCTTTGACCTGTCACTTCACCTCCAACACCTTAGTACTAATATTATTCTGTTGCGGTTTCTAAGCAGTGCACTGGGGATTCAAATTAGTGTTATTGGACATTTTGTCCTTAATCACATGGGACGCAAAATAATCCAGTTGGTTCTAATGTCCCTGAGGGGAATTTTCATGTTGACAGCTGTATTTGTGCCTCAAGgtaagctgcggtagaattaggcatacaaagaaatccagaccccataccaa #### Slc22a29_ID2256_7 --> 1 - 1 Original Alignment aCTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAg cgactcgtatggttcacaatgctggattatccccacattgtatttttcagaCTTTTCTTTACAGTATCAATTATTGGCCTAGCAGTTCATCTCCAGCACCTGAGTTCGAATATTATCCTGTTGCAGTTCCTTATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCATATTGGCCGTAGAGTAACTTATCTGGTCCTCATGTCCCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAggttggtatgtttgcactcacatgagcatggtggctacagatggcacaaca Alignment from CESAR aCTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAg cgactcgtatggttcacaatgctggattatccccacattgtatttttcagaCTTTTCTTTACAGTATCAATTATTGGCCTAGCAGTTCATCTCCAGCACCTGAGTTCGAATATTATCCTGTTGCAGTTCCTTATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCATATTGGCCGTAGAGTAACTTATCTGGTCCTCATGTCCCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAggttggtatgtttgcactcacatgagcatggtggctacagatggcacaaca Alignment from Spaln_aa2Genome ACTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAG cgactcgtatggttcacaatgctggattatccccacattgtatttttcagACTTTTCTTTACAGTATCAATTATTGGCCTAGCAGTTCATCTCCAGCACCTGAGTTCGAATATTATCCTGTTGCAGTTCCTTATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCATATTGGCCGTAGAGTAACTTATCTGGTCCTCATGTCCCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAGgttggtatgtttgcactcacatgagcatggtggctacagatggcacaaca Alignment from Spaln_nt2Genome ACTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAG cgactcgtatggttcacaatgctggattatccccacattgtatttttcagACTTTTCTTTACAGTATCAATTATTGGCCTAGCAGTTCATCTCCAGCACCTGAGTTCGAATATTATCCTGTTGCAGTTCCTTATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCATATTGGCCGTAGAGTAACTTATCTGGTCCTCATGTCCCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAGgttggtatgtttgcactcacatgagcatggtggctacagatggcacaaca Alignment from Pairagon ACTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAG cgactcgtatggttcacaatgctggattatccccacattgtatttttcagACTTTTCTTTACAGTATCAATTATTGGCCTAGCAGTTCATCTCCAGCACCTGAGTTCGAATATTATCCTGTTGCAGTTCCTTATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCATATTGGCCGTAGAGTAACTTATCTGGTCCTCATGTCCCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAGgttggtatgtttgcactcacatgagcatggtggctacagatggcacaaca Alignment from Exonerate_protein2genome ACTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAG cgactcgtatggttcacaatgctggattatccccacattgtatttttcagACTTTTCTTTACAGTATCAATTATTGGCCTAGCAGTTCATCTCCAGCACCTGAGTTCGAATATTATCCTGTTGCAGTTCCTTATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCATATTGGCCGTAGAGTAACTTATCTGGTCCTCATGTCCCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAGgttggtatgtttgcactcacatgagcatggtggctacagatggcacaaca Alignment from Exonerate_coding2genome ACTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAG cgactcgtatggttcacaatgctggattatccccacattgtatttttcagACTTTTCTTTACAGTATCAATTATTGGCCTAGCAGTTCATCTCCAGCACCTGAGTTCGAATATTATCCTGTTGCAGTTCCTTATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCATATTGGCCGTAGAGTAACTTATCTGGTCCTCATGTCCCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAGgttggtatgtttgcactcacatgagcatggtggctacagatggcacaaca Alignment from GeneWise ACTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAG cgactcgtatggttcacaatgctggattatccccacattgtatttttcagACTTTTCTTTACAGTATCAATTATTGGCCTAGCAGTTCATCTCCAGCACCTGAGTTCGAATATTATCCTGTTGCAGTTCCTTATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCATATTGGCCGTAGAGTAACTTATCTGGTCCTCATGTCCCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAGgttggtatgtttgcactcacatgagcatggtggctacagatggcacaaca #### Slc22a29_ID2259_4 --> 2 - 2 Original Alignment tgTTAGAATGGACAAGCCCTAAATTCCTAGCCATGATGGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGACTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGCGCCAATATTCTTCTTCCTTATACTCACAag ggggtgcttaggtcttgaatttcttcaaacactgtttttttcctttttagtgTTAGAGTGGACAAGCCCTAAATTCCTAGCCATGATAGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGATTAGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAACAATGTCTGCACCAATATTCTTTTTCCTTATACTCACAaggtgagtgcaatctctaccatgtaacatgagtgtgtgaatttagtcattta Alignment from CESAR tgTTAGAATGGACAAGCCCTAAATTCCTAGCCATGATGGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGACTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGCGCCAATATTCTTCTTCCTTATACTCACAag ggggtgcttaggtcttgaatttcttcaaacactgtttttttcctttttagtgTTAGAGTGGACAAGCCCTAAATTCCTAGCCATGATAGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGATTAGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAACAATGTCTGCACCAATATTCTTTTTCCTTATACTCACAaggtgagtgcaatctctaccatgtaacatgagtgtgtgaatttagtcattta Alignment from Spaln_aa2Genome TGTTAGAATGGACAAGCCCTAAATTCCTAGCCATGATGGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGACTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGCGCCAATATTCTTCTTCCTTATACTCACAAG ggggtgcttaggtcttgaatttcttcaaacactgtttttttcctttttagTGTTAGAGTGGACAAGCCCTAAATTCCTAGCCATGATAGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGATTAGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAACAATGTCTGCACCAATATTCTTTTTCCTTATACTCACAAGgtgagtgcaatctctaccatgtaacatgagtgtgtgaatttagtcattta Alignment from Spaln_nt2Genome TGTTAGAATGGACAAGCCCTAAATTCCTAGCCATGATGGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGACTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGCGCCAATATTCTTCTTCCTTATACTCACAAG ggggtgcttaggtcttgaatttcttcaaacactgtttttttcctttttagTGTTAGAGTGGACAAGCCCTAAATTCCTAGCCATGATAGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGATTAGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAACAATGTCTGCACCAATATTCTTTTTCCTTATACTCACAAGgtgagtgcaatctctaccatgtaacatgagtgtgtgaatttagtcattta Alignment from Pairagon TGTTAGAATGGACAAGCCCTAAATTCCTAGCCATGATGGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGACTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGCGCCAATATTCTTCTTCCTTATACTCACAAG ggggtgcttaggtcttgaatttcttcaaacactgtttttttcctttttagTGTTAGAGTGGACAAGCCCTAAATTCCTAGCCATGATAGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGATTAGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAACAATGTCTGCACCAATATTCTTTTTCCTTATACTCACAAGgtgagtgcaatctctaccatgtaacatgagtgtgtgaatttagtcattta Alignment from Exonerate_protein2genome TGTTAGAATGGACAAGCCCTAAATTCCTAGCCATGATGGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGACTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGCGCCAATATTCTTCTTCCTTATACTCACAAG ggggtgcttaggtcttgaatttcttcaaacactgtttttttcctttttagTGTTAGAGTGGACAAGCCCTAAATTCCTAGCCATGATAGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGATTAGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAACAATGTCTGCACCAATATTCTTTTTCCTTATACTCACAAGgtgagtgcaatctctaccatgtaacatgagtgtgtgaatttagtcattta Alignment from Exonerate_coding2genome TGTTAGAATGGACAAGCCCTAAATTCCTAGCCATGATGGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGACTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGCGCCAATATTCTTCTTCCTTATACTCACAAG ggggtgcttaggtcttgaatttcttcaaacactgtttttttcctttttagTGTTAGAGTGGACAAGCCCTAAATTCCTAGCCATGATAGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGATTAGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAACAATGTCTGCACCAATATTCTTTTTCCTTATACTCACAAGgtgagtgcaatctctaccatgtaacatgagtgtgtgaatttagtcattta Alignment from GeneWise TGTTAGAATGGACAAGCCCTAAATTCCTAGCCATGATGGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGACTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGCGCCAATATTCTTCTTCCTTATACTCACAAG ggggtgcttaggtcttgaatttcttcaaacactgtttttttcctttttagTGTTAGAGTGGACAAGCCCTAAATTCCTAGCCATGATAGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGATTAGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAACAATGTCTGCACCAATATTCTTTTTCCTTATACTCACAAGgtgagtgcaatctctaccatgtaacatgagtgtgtgaatttagtcattta #### Slc22a29_ID2260_3 --> 1 - 1 Original Alignment gTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTCACTTGCTCa aatccaacttgttgtggttcaggccactcttccaaactatttcttcccagaTTTGGGAGGCAGTTCACCCTAACATGTGCCTTATTACAGTTTGCCATCACTGAAATCTGTATAGCCTTTGCACCTTCCTTTTTCATTTACTGCTCACTACGATGTCTGGCTGGAATGTCTGTGGAACCCATATCTGTGAATAGTTACTTGCTGagtacgtcagcaaattgtcctgggacaggggtgcttaggtcttgaatttct Alignment from CESAR gTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTCACTTGCTCa aatccaacttgttgtggttcaggccactcttccaaactatttcttcccagaTTTGGGAGGCAGTTCACCCTAACATGTGCCTTATTACAGTTTGCCATCACTGAAATCTGTATAGCCTTTGCACCTTCCTTTTTCATTTACTGCTCACTACGATGTCTGGCTGGAATGTCTGTGGAACCCATATCTGTGAATAGTTACTTGCTGagtacgtcagcaaattgtcctgggacaggggtgcttaggtcttgaatttct Alignment from Spaln_aa2Genome GTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTCACTTGCTCA aatccaacttgttgtggttcaggccactcttccaaactatttcttcccagATTTGGGAGGCAGTTCACCCTAACATGTGCCTTATTACAGTTTGCCATCACTGAAATCTGTATAGCCTTTGCACCTTCCTTTTTCATTTACTGCTCACTACGATGTCTGGCTGGAATGTCTGTGGAACCCATATCTGTGAATAGTTACTTGCTGAgtacgtcagcaaattgtcctgggacaggggtgcttaggtcttgaatttct Alignment from Spaln_nt2Genome GTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTCACTTGCTCA aatccaacttgttgtggttcaggccactcttccaaactatttcttcccagATTTGGGAGGCAGTTCACCCTAACATGTGCCTTATTACAGTTTGCCATCACTGAAATCTGTATAGCCTTTGCACCTTCCTTTTTCATTTACTGCTCACTACGATGTCTGGCTGGAATGTCTGTGGAACCCATATCTGTGAATAGTTACTTGCTGAgtacgtcagcaaattgtcctgggacaggggtgcttaggtcttgaatttct Alignment from Pairagon GTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTCACTTGCTCA aatccaacttgttgtggttcaggccactcttccaaactatttcttcccagATTTGGGAGGCAGTTCACCCTAACATGTGCCTTATTACAGTTTGCCATCACTGAAATCTGTATAGCCTTTGCACCTTCCTTTTTCATTTACTGCTCACTACGATGTCTGGCTGGAATGTCTGTGGAACCCATATCTGTGAATAGTTACTTGCTGAgtacgtcagcaaattgtcctgggacaggggtgcttaggtcttgaatttct Alignment from Exonerate_protein2genome GTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTCACTTGCTCA aatccaacttgttgtggttcaggccactcttccaaactatttcttcccagATTTGGGAGGCAGTTCACCCTAACATGTGCCTTATTACAGTTTGCCATCACTGAAATCTGTATAGCCTTTGCACCTTCCTTTTTCATTTACTGCTCACTACGATGTCTGGCTGGAATGTCTGTGGAACCCATATCTGTGAATAGTTACTTGCTGAgtacgtcagcaaattgtcctgggacaggggtgcttaggtcttgaatttct Alignment from Exonerate_coding2genome GTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTCACTTGCTCA aatccaacttgttgtggttcaggccactcttccaaactatttcttcccagATTTGGGAGGCAGTTCACCCTAACATGTGCCTTATTACAGTTTGCCATCACTGAAATCTGTATAGCCTTTGCACCTTCCTTTTTCATTTACTGCTCACTACGATGTCTGGCTGGAATGTCTGTGGAACCCATATCTGTGAATAGTTACTTGCTGAgtacgtcagcaaattgtcctgggacaggggtgcttaggtcttgaatttct Alignment from GeneWise GTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTCACTTGCTCA aatccaacttgttgtggttcaggccactcttccaaactatttcttcccagATTTGGGAGGCAGTTCACCCTAACATGTGCCTTATTACAGTTTGCCATCACTGAAATCTGTATAGCCTTTGCACCTTCCTTTTTCATTTACTGCTCACTACGATGTCTGGCTGGAATGTCTGTGGAACCCATATCTGTGAATAGTTACTTGCTGAgtacgtcagcaaattgtcctgggacaggggtgcttaggtcttgaatttct #### Slc22a6_ID2283_4 --> 2 - 2 Original Alignment acATGGAGTGGATGCCTATTCACACCCGTGCCTATGTGGGCACCTTGATTGGCTATGTCTACAGCTTGGGCCAGTTCCTCCTGGCTGGTATCGCCTATGCTGTGCCCCACTGGCGCCACCTGCAGCTTGCGGTCTCTGTGCCTTTTTTCGTTGCCTTCATCTACTCTtg ctcattatgtggcccagcacctttcatcccctcccatctgggctatttagacATGGAGTGGACACCCATTCACACCCGTGTATATGTCTGCACATTGATTGGATATGTCTACAGCTTGGGCCAGTACCTCCTGGCTGGCATTGCTTATGCTGTGACCCACTGGAGGCACCTACAAATTGCTGTTTCTGTTCCTTTTTGTGTTGCATTTATCTACTCTtggtaccatggatccaaagcgcaagggggcactaaaagattcatccctttta Alignment from CESAR acATGGAGTGGATGCCTATTCACACCCGTGCCTATGTGGGCACCTTGATTGGCTATGTCTACAGCTTGGGCCAGTTCCTCCTGGCTGGTATCGCCTATGCTGTGCCCCACTGGCGCCACCTGCAGCTTGCGGTCTCTGTGCCTTTTTTCGTTGCCTTCATCTACTCTtg ctcattatgtggcccagcacctttcatcccctcccatctgggctatttagacATGGAGTGGACACCCATTCACACCCGTGTATATGTCTGCACATTGATTGGATATGTCTACAGCTTGGGCCAGTACCTCCTGGCTGGCATTGCTTATGCTGTGACCCACTGGAGGCACCTACAAATTGCTGTTTCTGTTCCTTTTTGTGTTGCATTTATCTACTCTtggtaccatggatccaaagcgcaagggggcactaaaagattcatccctttta Alignment from Spaln_aa2Genome ACATGGAGTGGATGCCTATTCACACCCGTGCCTATGTGGGCACCTTGATTGGCTATGTCTACAGCTTGGGCCAGTTCCTCCTGGCTGGTATCGCCTATGCTGTGCCCCACTGGCGCCACCTGCAGCTTGCGGTCTCTGTGCCTTTTTTCGTTGCCTTCATCTACTCTTG ctcattatgtggcccagcacctttcatcccctcccatctgggctatttagACATGGAGTGGACACCCATTCACACCCGTGTATATGTCTGCACATTGATTGGATATGTCTACAGCTTGGGCCAGTACCTCCTGGCTGGCATTGCTTATGCTGTGACCCACTGGAGGCACCTACAAATTGCTGTTTCTGTTCCTTTTTGTGTTGCATTTATCTACTCTTGgtaccatggatccaaagcgcaagggggcactaaaagattcatccctttta Alignment from Spaln_nt2Genome ACATGGAGTGGATGCCTATTCACACCCGTGCCTATGTGGGCACCTTGATTGGCTATGTCTACAGCTTGGGCCAGTTCCTCCTGGCTGGTATCGCCTATGCTGTGCCCCACTGGCGCCACCTGCAGCTTGCGGTCTCTGTGCCTTTTTTCGTTGCCTTCATCTACTCTTG ctcattatgtggcccagcacctttcatcccctcccatctgggctatttagACATGGAGTGGACACCCATTCACACCCGTGTATATGTCTGCACATTGATTGGATATGTCTACAGCTTGGGCCAGTACCTCCTGGCTGGCATTGCTTATGCTGTGACCCACTGGAGGCACCTACAAATTGCTGTTTCTGTTCCTTTTTGTGTTGCATTTATCTACTCTTGgtaccatggatccaaagcgcaagggggcactaaaagattcatccctttta Alignment from Pairagon ACATGGAGTGGATGCCTATTCACACCCGTGCCTATGTGGGCACCTTGATTGGCTATGTCTACAGCTTGGGCCAGTTCCTCCTGGCTGGTATCGCCTATGCTGTGCCCCACTGGCGCCACCTGCAGCTTGCGGTCTCTGTGCCTTTTTTCGTTGCCTTCATCTACTCTTG ctcattatgtggcccagcacctttcatcccctcccatctgggctatttagACATGGAGTGGACACCCATTCACACCCGTGTATATGTCTGCACATTGATTGGATATGTCTACAGCTTGGGCCAGTACCTCCTGGCTGGCATTGCTTATGCTGTGACCCACTGGAGGCACCTACAAATTGCTGTTTCTGTTCCTTTTTGTGTTGCATTTATCTACTCTTGgtaccatggatccaaagcgcaagggggcactaaaagattcatccctttta Alignment from Exonerate_protein2genome ACATGGAGTGGATGCCTATTCACACCCGTGCCTATGTGGGCACCTTGATTGGCTATGTCTACAGCTTGGGCCAGTTCCTCCTGGCTGGTATCGCCTATGCTGTGCCCCACTGGCGCCACCTGCAGCTTGCGGTCTCTGTGCCTTTTTTCGTTGCCTTCATCTACTCTTG ctcattatgtggcccagcacctttcatcccctcccatctgggctatttagACATGGAGTGGACACCCATTCACACCCGTGTATATGTCTGCACATTGATTGGATATGTCTACAGCTTGGGCCAGTACCTCCTGGCTGGCATTGCTTATGCTGTGACCCACTGGAGGCACCTACAAATTGCTGTTTCTGTTCCTTTTTGTGTTGCATTTATCTACTCTTGgtaccatggatccaaagcgcaagggggcactaaaagattcatccctttta Alignment from Exonerate_coding2genome ACATGGAGTGGATGCCTATTCACACCCGTGCCTATGTGGGCACCTTGATTGGCTATGTCTACAGCTTGGGCCAGTTCCTCCTGGCTGGTATCGCCTATGCTGTGCCCCACTGGCGCCACCTGCAGCTTGCGGTCTCTGTGCCTTTTTTCGTTGCCTTCATCTACTCTTG ctcattatgtggcccagcacctttcatcccctcccatctgggctatttagACATGGAGTGGACACCCATTCACACCCGTGTATATGTCTGCACATTGATTGGATATGTCTACAGCTTGGGCCAGTACCTCCTGGCTGGCATTGCTTATGCTGTGACCCACTGGAGGCACCTACAAATTGCTGTTTCTGTTCCTTTTTGTGTTGCATTTATCTACTCTTGgtaccatggatccaaagcgcaagggggcactaaaagattcatccctttta Alignment from GeneWise ACATGGAGTGGATGCCTATTCACACCCGTGCCTATGTGGGCACCTTGATTGGCTATGTCTACAGCTTGGGCCAGTTCCTCCTGGCTGGTATCGCCTATGCTGTGCCCCACTGGCGCCACCTGCAGCTTGCGGTCTCTGTGCCTTTTTTCGTTGCCTTCATCTACTCTTG ctcattatgtggcccagcacctttcatcccctcccatctgggctatttagACATGGAGTGGACACCCATTCACACCCGTGTATATGTCTGCACATTGATTGGATATGTCTACAGCTTGGGCCAGTACCTCCTGGCTGGCATTGCTTATGCTGTGACCCACTGGAGGCACCTACAAATTGCTGTTTCTGTTCCTTTTTGTGTTGCATTTATCTACTCTTGgtaccatggatccaaagcgcaagggggcactaaaagattcatccctttta #### Slc22a6_ID2288_9 --> 1 - 2 Original Alignment gCAGACGGGCCTGGGCATGGGCAGCACCATGGCCCGGGTGGGCAGCATAGTGAGCCCACTGATAAGCATGACTGCCGAGTTCTACCCCTCCATACCTCTCTTCATCTTCGGCGCTGTCCCCGTGGCCGCCAGCGCTGTCACTGCCCTGCTGCCAGAGACCTTGGGCCAGCCGCTGCCTGATACAGTGCAGGACCTGAAGAGCag aatatatcccactctgatccagatctccaggtgttcactctccctcccagaCAGACAGGCTTGGGGATGGGCAGTACAATGGCTCAGGTGGCCAGCATATTGAGCCCACTAATAAGTATGACCGCCGAGTTCTACCCTTCCATACCTCTCTTCATCTATGGAGCTGTCCCTGTGGTGGCAAGTACAGTCACTGCTCTTCTGCCA------TTAGGCCAGCCACTGCCTGATACAGTGCAGGACTTGAAAAGCaagtacagaccccctatcctatagctaatcctggtcctcaaggtgggtaatc Alignment from CESAR gCAGACGGGCCTGGGCATGGGCAGCACCATGGCCCGGGTGGGCAGCATAGTGAGCCCACTGATAAGCATGACTGCCGAGTTCTACCCCTCCATACCTCTCTTCATCTTCGGCGCTGTCCCCGTGGCCGCCAGCGCTGTCACTGCCCTGCTGCCAGAGACCTTGGGCCAGCCGCTGCCTGATACAGTGCAGGACCTGAAGAGCag aatatatcccactctgatccagatctccaggtgttcactctccctcccagaCAGACAGGCTTGGGGATGGGCAGTACAATGGCTCAGGTGGCCAGCATATTGAGCCCACTAATAAGTATGACCGCCGAGTTCTACCCTTCCATACCTCTCTTCATCTATGGAGCTGTCCCTGTGGTGGCAAGTACAGTCACTGCTCTTCTGCCA------TTAGGCCAGCCACTGCCTGATACAGTGCAGGACTTGAAAAGCaagtacagaccccctatcctatagctaatcctggtcctcaaggtgggtaatc Alignment from Spaln_aa2Genome GCAGACGGGCCTGGGCATGGGCAGCACCATGGCCCGGGTGGGCAGCATAGTGAGCCCACTGATAAGCATGACTGCCGAGTTCTACCCCTCCATACCTCTCTTCATCTTCGGCGCTGTCCCCGTGGCCGCCAGCGCTGTCACTGCCCTGCTGCCAGAGACCTTGGGCCAGCCGCTGCCTGATACAGTGCAGGACCTGAAGAGCAG aatatatcccactctgatccagatctccaggtgttcactctccctcccagACAGACAGGCTTGGGGATGGGCAGTACAATGGCTCAGGTGGCCAGCATATTGAGCCCACTAATAAGTATGACCGCCGAGTTCTACCCTTCCATACCTCTCTTCATCTATGGAGCTGTCCCTGTGGTGGCAAGTACAGTCACTGCTCTTCTGCCA------TTAGGCCAGCCACTGCCTGATACAGTGCAGGACTTGAAAAGCAAgtacagaccccctatcctatagctaatcctggtcctcaaggtgggtaatc Alignment from Spaln_nt2Genome GCAGACGGGCCTGGGCATGGGCAGCACCATGGCCCGGGTGGGCAGCATAGTGAGCCCACTGATAAGCATGACTGCCGAGTTCTACCCCTCCATACCTCTCTTCATCTTCGGCGCTGTCCCCGTGGCCGCCAGCGCTGTCACTGCCCTGCTGCCAGAGACCTTGGGCCAGCCGCTGCCTGATACAGTGCAGGACCTGAAGAGCAG aatatatcccactctgatccagatctccaggtgttcactctccctcccagACAGACAGGCTTGGGGATGGGCAGTACAATGGCTCAGGTGGCCAGCATATTGAGCCCACTAATAAGTATGACCGCCGAGTTCTACCCTTCCATACCTCTCTTCATCTATGGAGCTGTCCCTGTGGTGGCAAGTACAGTCACTGCTCTTCTGCCA------TTAGGCCAGCCACTGCCTGATACAGTGCAGGACTTGAAAAGCAAgtacagaccccctatcctatagctaatcctggtcctcaaggtgggtaatc Alignment from Pairagon GCAGACGGGCCTGGGCATGGGCAGCACCATGGCCCGGGTGGGCAGCATAGTGAGCCCACTGATAAGCATGACTGCCGAGTTCTACCCCTCCATACCTCTCTTCATCTTCGGCGCTGTCCCCGTGGCCGCCAGCGCTGTCACTGCCCTGCTGCCAGAGACCTTGGGCCAGCCGCTGCCTGATACAGTGCAGGACCTGAAGAGCAG aatatatcccactctgatccagatctccaggtgttcactctccctcccagACAGACAGGCTTGGGGATGGGCAGTACAATGGCTCAGGTGGCCAGCATATTGAGCCCACTAATAAGTATGACCGCCGAGTTCTACCCTTCCATACCTCTCTTCATCTATGGAGCTGTCCCTGTGGTGGCAAGTACAGTCACTGCTCTTCTGCCA------TTAGGCCAGCCACTGCCTGATACAGTGCAGGACTTGAAAAGCAAgtacagaccccctatcctatagctaatcctggtcctcaaggtgggtaatc Alignment from Exonerate_protein2genome GCAGACGGGCCTGGGCATGGGCAGCACCATGGCCCGGGTGGGCAGCATAGTGAGCCCACTGATAAGCATGACTGCCGAGTTCTACCCCTCCATACCTCTCTTCATCTTCGGCGCTGTCCCCGTGGCCGCCAGCGCTGTCACTGCCCTGCTGCCAGAGACCTTGGGCCAGCCGCTGCCTGATACAGTGCAGGACCTGAAGAGCAG aatatatcccactctgatccagatctccaggtgttcactctccctcccagACAGACAGGCTTGGGGATGGGCAGTACAATGGCTCAGGTGGCCAGCATATTGAGCCCACTAATAAGTATGACCGCCGAGTTCTACCCTTCCATACCTCTCTTCATCTATGGAGCTGTCCCTGTGGTGGCAAGTACAGTCACTGCTCTTCTGCCA------TTAGGCCAGCCACTGCCTGATACAGTGCAGGACTTGAAAAGCAAgtacagaccccctatcctatagctaatcctggtcctcaaggtgggtaatc Alignment from Exonerate_coding2genome GCAGACGGGCCTGGGCATGGGCAGCACCATGGCCCGGGTGGGCAGCATAGTGAGCCCACTGATAAGCATGACTGCCGAGTTCTACCCCTCCATACCTCTCTTCATCTTCGGCGCTGTCCCCGTGGCCGCCAGCGCTGTCACTGCCCTGCTGCCAGAGACCTTGGGCCAGCCGCTGCCTGATACAGTGCAGGACCTGAAGAGCAG aatatatcccactctgatccagatctccaggtgttcactctccctcccagACAGACAGGCTTGGGGATGGGCAGTACAATGGCTCAGGTGGCCAGCATATTGAGCCCACTAATAAGTATGACCGCCGAGTTCTACCCTTCCATACCTCTCTTCATCTATGGAGCTGTCCCTGTGGTGGCAAGTACAGTCACTGCTCTTCTGCCA------TTAGGCCAGCCACTGCCTGATACAGTGCAGGACTTGAAAAGCAAgtacagaccccctatcctatagctaatcctggtcctcaaggtgggtaatc Alignment from GeneWise GCAGACGGGCCTGGGCATGGGCAGCACCATGGCCCGGGTGGGCAGCATAGTGAGCCCACTGATAAGCATGACTGCCGAGTTCTACCCCTCCATACCTCTCTTCATCTTCGGCGCTGTCCCCGTGGCCGCCAGCGCTGTCACTGCCCTGCTGCCAGAGACCTTGGGCCAGCCGCTGCCTGATACAGTGCAGGACCTGAAGAGCAGGAGCAGA aatatatcccactctgatccagatctccaggtgttcactctccctcccagACAGACAGGCTTGGGGATGGGCAGTACAATGGCTCAGGTGGCCAGCATATTGAGCCCACTAATAAGTATGACCGCCGAGTTCTACCCTTCCATACCTCTCTTCATCTATGGAGCTGTCCCTGTGGTGGCAAGTACAGTCACTGCTCTTCTGCCA------TTAGGCCAGCCACTGCCTGATACAGTGCAGGACTTGAAAAGCAAGTACAGAccccctatcctatagctaatcctggtcctcaaggtgggtaatc #### Slc22a8_ID2276_9 --> 1 - 2 Original Alignment gCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACtg aagttcagtatgagtggaccagactctctttggcctcgggctccgggtaggCAAACAGGCATGGGTATCAGTAATATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTCAAAGTCACCGGTGAACTGCAGTCCTTCACTCCTAATGTCATCTTTGGTACCATG---CTACTGGGAGGCAGTGCTGCATTCTTTCTACTTGAAACCCTAAATAGATCTCTACCAGAGACCATCAAGGACATACAAGATtggtgagttcccttagccccttaacttttgttacacacagttaacctagcag Alignment from CESAR gCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACtg aagttcagtatgagtggaccagactctctttggcctcgggctccgggtaggCAAACAGGCATGGGTATCAGTAATATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTCAAAGTCACCGGTGAACTGCAGTCCTTCACTCCTAATGTCATCTTTGGTACCATG---CTACTGGGAGGCAGTGCTGCATTCTTTCTACTTGAAACCCTAAATAGATCTCTACCAGAGACCATCAAGGACATACAAGATtggtgagttcccttagccccttaacttttgttacacacagttaacctagcag Alignment from Spaln_aa2Genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG aagttcagtatgagtggaccagactctctttggcctcgggctccgggtagGCAAACAGGCATGGGTATCAGTAATATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTCAAAGTCACCGGTGAACTGCAGTCCTTCACTCCTAATGTCATCTTTGGTACCATGCTACTGGGA---GGCAGTGCTGCATTCTTTCTACTTGAAACCCTAAATAGATCTCTACCAGAGACCATCAAGGACATACAAGATTGgtgagttcccttagccccttaacttttgttacacacagttaacctagcag Alignment from Spaln_nt2Genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG aagttcagtatgagtggaccagactctctttggcctcgggctccgggtagGCAAACAGGCATGGGTATCAGTAATATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTCAAAGTCACCGGTGAACTGCAGTCCTTCACTCCTAATGTCATCTTTGGTACCATG---CTACTGGGAGGCAGTGCTGCATTCTTTCTACTTGAAACCCTAAATAGATCTCTACCAGAGACCATCAAGGACATACAAGATTGgtgagttcccttagccccttaacttttgttacacacagttaacctagcag Alignment from Pairagon GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG aagttcagtatgagtggaccagactctctttggcctcgggctccgggtagGCAAACAGGCATGGGTATCAGTAATATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTCAAAGTCACCGGTGAACTGCAGTCCTTCACTCCTAATGTCATCTTTGGTACCATG---CTACTGGGAGGCAGTGCTGCATTCTTTCTACTTGAAACCCTAAATAGATCTCTACCAGAGACCATCAAGGACATACAAGATTGgtgagttcccttagccccttaacttttgttacacacagttaacctagcag Alignment from Exonerate_protein2genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG aagttcagtatgagtggaccagactctctttggcctcgggctccgggtagGCAAACAGGCATGGGTATCAGTAATATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTCAAAGTCACCGGTGAACTGCAGTCCTTCACTCCTAATGTCATCTTTGGTACCATG---CTACTGGGAGGCAGTGCTGCATTCTTTCTACTTGAAACCCTAAATAGATCTCTACCAGAGACCATCAAGGACATACAAGATTGgtgagttcccttagccccttaacttttgttacacacagttaacctagcag Alignment from Exonerate_coding2genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG aagttcagtatgagtggaccagactctctttggcctcgggctccgggtagGCAAACAGGCATGGGTATCAGTAATATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTCAAAGTCACCGGTGAACTGCAGTCCTTCACTCCTAATGTCATCTTTGGTACCATG---CTACTGGGAGGCAGTGCTGCATTCTTTCTACTTGAAACCCTAAATAGATCTCTACCAGAGACCATCAAGGACATACAAGATTGgtgagttcccttagccccttaacttttgttacacacagttaacctagcag Alignment from GeneWise GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG aagttcagtatgagtggaccagactctctttggcctcgggctccgggtagGCAAACAGGCATGGGTATCAGTAATATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTCAAAGTCACCGGTGAACTGCAGTCCTTCACTCCTAATGTCATCTTTGGTACCATG---CTACTGGGAGGCAGTGCTGCATTCTTTCTACTTGAAACCCTAAATAGATCTCTACCAGAGACCATCAAGGACATACAAGATTGgtgagttcccttagccccttaacttttgttacacacagttaacctagcag #### Slc25a28_ID8782_3 --> 2 - 1 Original Alignment gtGCAGCCGGATGTGTGGCGACATTACTTCATGATGCAGCCATGAATCCAGCGGAAg atcagtgtttagacaacatgttgtctggctgacccagacttcttttacaggtGCAGCTGGATGTGTAGCAACACTGCTGCATGATGCTGCAATGAATCCAGCAGAAggtgggcctccacttgccgtgtcgacctgcttgtagcctctaagcctaaca Alignment from CESAR gtGCAGCCGGATGTGTGGCGACATTACTTCATGATGCAGCCATGAATCCAGCGGAAg atcagtgtttagacaacatgttgtctggctgacccagacttcttttacaggtGCAGCTGGATGTGTAGCAACACTGCTGCATGATGCTGCAATGAATCCAGCAGAAggtgggcctccacttgccgtgtcgacctgcttgtagcctctaagcctaaca Alignment from Spaln_aa2Genome GTGCAGCCGGATGTGTGGCGACATTACTTCATGATGCAGCCATGAATCCAGCGGAAG atcagtgtttagacaacatgttgtctggctgacccagacttcttttacagGTGCAGCTGGATGTGTAGCAACACTGCTGCATGATGCTGCAATGAATCCAGCAGAAGgtgggcctccacttgccgtgtcgacctgcttgtagcctctaagcctaaca Alignment from Spaln_nt2Genome GTGCAGCCGGATGTGTGGCGACATTACTTCATGATGCAGCCATGAATCCAGCGGAAG atcagtgtttagacaacatgttgtctggctgacccagacttcttttacagGTGCAGCTGGATGTGTAGCAACACTGCTGCATGATGCTGCAATGAATCCAGCAGAAGgtgggcctccacttgccgtgtcgacctgcttgtagcctctaagcctaaca Alignment from Pairagon GTGCAGCCGGATGTGTGGCGACATTACTTCATGATGCAGCCATGAATCCAGCGGAAG atcagtgtttagacaacatgttgtctggctgacccagacttcttttacagGTGCAGCTGGATGTGTAGCAACACTGCTGCATGATGCTGCAATGAATCCAGCAGAAGgtgggcctccacttgccgtgtcgacctgcttgtagcctctaagcctaaca Alignment from Exonerate_protein2genome GTGCAGCCGGATGTGTGGCGACATTACTTCATGATGCAGCCATGAATCCAGCGGAAG atcagtgtttagacaacatgttgtctggctgacccagacttcttttacagGTGCAGCTGGATGTGTAGCAACACTGCTGCATGATGCTGCAATGAATCCAGCAGAAGgtgggcctccacttgccgtgtcgacctgcttgtagcctctaagcctaaca Alignment from Exonerate_coding2genome atcagtgtttagacaacatgttgtctggctgacccagacttcttttacaggtgcagctggatgtgtagcaacactgctgcatgatgctgcaatgaatccagcagaaggtgggcctccacttgccgtgtcgacctgcttgtagcctctaagcctaaca Alignment from GeneWise GTGCAGCCGGATGTGTGGCGACATTACTTCATGATGCAGCCATGAATCCAGCGGAAG atcagtgtttagacaacatgttgtctggctgacccagacttcttttacagGTGCAGCTGGATGTGTAGCAACACTGCTGCATGATGCTGCAATGAATCCAGCAGAAGgtgggcctccacttgccgtgtcgacctgcttgtagcctctaagcctaaca #### Slc29a2_ID794_8 --> 2 - 0 Original Alignment atGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ctaatgaaaatctttaaagccataatgtccttttccctctcctttcccagatGCAAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCCAGCCCAACTCTTGAGCTGGACCCTGAAACGGAGCCAGAACCAGAGCAGCCACAGAAGCCAGGCAAACCCTCAGTCTTTGTGGTTTTCAGGAAAgtaagttatcatgtacagccaggggtgggagcagtgggttgtttgacatg Alignment from CESAR atGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ctaatgaaaatctttaaagccataatgtccttttccctctcctttcccagatGCAAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCCAGCCCAACTCTTGAGCTGGACCCTGAAACGGAGCCAGAACCAGAGCAGCCACAGAAGCCAGGCAAACCCTCAGTCTTTGTGGTTTTCAGGAAAgtaagttatcatgtacagccaggggtgggagcagtgggttgtttgacatg Alignment from Spaln_aa2Genome ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ctaatgaaaatctttaaagccataatgtccttttccctctcctttcccagATGCAAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCCAGCCCAACTCTTGAGCTGGACCCTGAAACGGAGCCAGAACCAGAGCAGCCACAGAAGCCAGGCAAACCCTCAGTCTTTGTGGTTTTCAGGAAAgtaagttatcatgtacagccaggggtgggagcagtgggttgtttgacatg Alignment from Spaln_nt2Genome ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ctaatgaaaatctttaaagccataatgtccttttccctctcctttcccagATGCAAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCCAGCCCAACTCTTGAGCTGGACCCTGAAACGGAGCCAGAACCAGAGCAGCCACAGAAGCCAGGCAAACCCTCAGTCTTTGTGGTTTTCAGGAAAgtaagttatcatgtacagccaggggtgggagcagtgggttgtttgacatg Alignment from Pairagon ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ctaatgaaaatctttaaagccataatgtccttttccctctcctttcccagATGCAAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCCAGCCCAACTCTTGAGCTGGACCCTGAAACGGAGCCAGAACCAGAGCAGCCACAGAAGCCAGGCAAACCCTCAGTCTTTGTGGTTTTCAGGAAAgtaagttatcatgtacagccaggggtgggagcagtgggttgtttgacatg Alignment from Exonerate_protein2genome ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ctaatgaaaatctttaaagccataatgtccttttccctctcctttcccagATGCAAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCCAGCCCAACTCTTGAGCTGGACCCTGAAACGGAGCCAGAACCAGAGCAGCCACAGAAGCCAGGCAAACCCTCAGTCTTTGTGGTTTTCAGGAAAgtaagttatcatgtacagccaggggtgggagcagtgggttgtttgacatg Alignment from Exonerate_coding2genome ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ctaatgaaaatctttaaagccataatgtccttttccctctcctttcccagATGCAAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCCAGCCCAACTCTTGAGCTGGACCCTGAAACGGAGCCAGAACCAGAGCAGCCACAGAAGCCAGGCAAACCCTCAGTCTTTGTGGTTTTCAGGAAAgtaagttatcatgtacagccaggggtgggagcagtgggttgtttgacatg Alignment from GeneWise ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ctaatgaaaatctttaaagccataatgtccttttccctctcctttcccagATGCAAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCCAGCCCAACTCTTGAGCTGGACCCTGAAACGGAGCCAGAACCAGAGCAGCCACAGAAGCCAGGCAAACCCTCAGTCTTTGTGGTTTTCAGGAAAgtaagttatcatgtacagccaggggtgggagcagtgggttgtttgacatg #### Slc29a2_ID796_10 --> 2 - 0 Original Alignment gtCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacagaggagccagtcttgtaattcccgtttaacaggtCTGTTCTTCAACCCTATCTGCTGCTTTCCACTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACTTCCTACTTCCTGTGGgtaggtgtctgggccagagtggcattacttaaaaggactagacaaccaga Alignment from CESAR gtCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacagaggagccagtcttgtaattcccgtttaacaggtCTGTTCTTCAACCCTATCTGCTGCTTTCCACTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACTTCCTACTTCCTGTGGgtaggtgtctgggccagagtggcattacttaaaaggactagacaaccaga Alignment from Spaln_aa2Genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacagaggagccagtcttgtaattcccgtttaacagGTCTGTTCTTCAACCCTATCTGCTGCTTTCCACTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACTTCCTACTTCCTGTGGgtaggtgtctgggccagagtggcattacttaaaaggactagacaaccaga Alignment from Spaln_nt2Genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacagaggagccagtcttgtaattcccgtttaacagGTCTGTTCTTCAACCCTATCTGCTGCTTTCCACTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACTTCCTACTTCCTGTGGgtaggtgtctgggccagagtggcattacttaaaaggactagacaaccaga Alignment from Pairagon GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacagaggagccagtcttgtaattcccgtttaacagGTCTGTTCTTCAACCCTATCTGCTGCTTTCCACTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACTTCCTACTTCCTGTGGgtaggtgtctgggccagagtggcattacttaaaaggactagacaaccaga Alignment from Exonerate_protein2genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacagaggagccagtcttgtaattcccgtttaacagGTCTGTTCTTCAACCCTATCTGCTGCTTTCCACTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACTTCCTACTTCCTGTGGgtaggtgtctgggccagagtggcattacttaaaaggactagacaaccaga Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacagaggagccagtcttgtaattcccgtttaacagGTCTGTTCTTCAACCCTATCTGCTGCTTTCCACTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACTTCCTACTTCCTGTGGgtaggtgtctgggccagagtggcattacttaaaaggactagacaaccaga #### Slit1_ID8202_36 --> 1 - 1 Original Alignment gTGTGTCCATGGGAAATGCGTGCCGCTCGACGCTCTTGCCTACAGCTGCCAGTGCCAGGATGGGTACTCGGGGGCTCTGTGCAACCAGGTCGGGGCTGTGGCAGAGCCCTGTGGGGGCTTGCAGTGCCTGCATGGTCACTGCCAGGCCTCTGCCACCAAAGGGGCACACTGTGTGTGCAGCCCAGGCTTTTCAGGCGAGCTGTGTGAGCAAg tatattaaaacaattttttctcagccaactctcctctcctgcctctccagaTGTGTCCATGGAAAATGTGTGCCACTCGATGCACTTGCATATAGCTGTGAATGCCAAGATGGGTACTCAGGAGCTCTGTGCAATCAGGTGGGGGCAGTTACTGATCCTTGCGGGGCCTTGCAGTGCCTGCACGGTCATTGCCAGGCCTCAGCAACTATTGGAGCCCATTGTGTGTGCAGCCCAGGTTTCTCAGGCAAACTGTGGGAACAGggtatccgccctcttctggctagccctctggttgcaatactcctcatgatt Alignment from CESAR gTGTGTCCATGGGAAATGCGTGCCGCTCGACGCTCTTGCCTACAGCTGCCAGTGCCAGGATGGGTACTCGGGGGCTCTGTGCAACCAGGTCGGGGCTGTGGCAGAGCCCTGTGGGGGCTTGCAGTGCCTGCATGGTCACTGCCAGGCCTCTGCCACCAAAGGGGCACACTGTGTGTGCAGCCCAGGCTTTTCAGGCGAGCTGTGTGAGCAAg tatattaaaacaattttttctcagccaactctcctctcctgcctctccagaTGTGTCCATGGAAAATGTGTGCCACTCGATGCACTTGCATATAGCTGTGAATGCCAAGATGGGTACTCAGGAGCTCTGTGCAATCAGGTGGGGGCAGTTACTGATCCTTGCGGGGCCTTGCAGTGCCTGCACGGTCATTGCCAGGCCTCAGCAACTATTGGAGCCCATTGTGTGTGCAGCCCAGGTTTCTCAGGCAAACTGTGGGAACAGggtatccgccctcttctggctagccctctggttgcaatactcctcatgatt Alignment from Spaln_aa2Genome GTGTGTCCATGGGAAATGCGTGCCGCTCGACGCTCTTGCCTACAGCTGCCAGTGCCAGGATGGGTACTCGGGGGCTCTGTGCAACCAGGTCGGGGCTGTGGCAGAGCCCTGTGGGGGCTTGCAGTGCCTGCATGGTCACTGCCAGGCCTCTGCCACCAAAGGGGCACACTGTGTGTGCAGCCCAGGCTTTTCAGGCGAGCTGTGTGAGCAAG tatattaaaacaattttttctcagccaactctcctctcctgcctctccagATGTGTCCATGGAAAATGTGTGCCACTCGATGCACTTGCATATAGCTGTGAATGCCAAGATGGGTACTCAGGAGCTCTGTGCAATCAGGTGGGGGCAGTTACTGATCCTTGCGGGGCCTTGCAGTGCCTGCACGGTCATTGCCAGGCCTCAGCAACTATTGGAGCCCATTGTGTGTGCAGCCCAGGTTTCTCAGGCAAACTGTGGGAACAGGgtatccgccctcttctggctagccctctggttgcaatactcctcatgatt Alignment from Spaln_nt2Genome GTGTGTCCATGGGAAATGCGTGCCGCTCGACGCTCTTGCCTACAGCTGCCAGTGCCAGGATGGGTACTCGGGGGCTCTGTGCAACCAGGTCGGGGCTGTGGCAGAGCCCTGTGGGGGCTTGCAGTGCCTGCATGGTCACTGCCAGGCCTCTGCCACCAAAGGGGCACACTGTGTGTGCAGCCCAGGCTTTTCAGGCGAGCTGTGTGAGCAAG tatattaaaacaattttttctcagccaactctcctctcctgcctctccagATGTGTCCATGGAAAATGTGTGCCACTCGATGCACTTGCATATAGCTGTGAATGCCAAGATGGGTACTCAGGAGCTCTGTGCAATCAGGTGGGGGCAGTTACTGATCCTTGCGGGGCCTTGCAGTGCCTGCACGGTCATTGCCAGGCCTCAGCAACTATTGGAGCCCATTGTGTGTGCAGCCCAGGTTTCTCAGGCAAACTGTGGGAACAGGgtatccgccctcttctggctagccctctggttgcaatactcctcatgatt Alignment from Pairagon GTGTGTCCATGGGAAATGCGTGCCGCTCGACGCTCTTGCCTACAGCTGCCAGTGCCAGGATGGGTACTCGGGGGCTCTGTGCAACCAGGTCGGGGCTGTGGCAGAGCCCTGTGGGGGCTTGCAGTGCCTGCATGGTCACTGCCAGGCCTCTGCCACCAAAGGGGCACACTGTGTGTGCAGCCCAGGCTTTTCAGGCGAGCTGTGTGAGCAAG tatattaaaacaattttttctcagccaactctcctctcctgcctctccagATGTGTCCATGGAAAATGTGTGCCACTCGATGCACTTGCATATAGCTGTGAATGCCAAGATGGGTACTCAGGAGCTCTGTGCAATCAGGTGGGGGCAGTTACTGATCCTTGCGGGGCCTTGCAGTGCCTGCACGGTCATTGCCAGGCCTCAGCAACTATTGGAGCCCATTGTGTGTGCAGCCCAGGTTTCTCAGGCAAACTGTGGGAACAGGgtatccgccctcttctggctagccctctggttgcaatactcctcatgatt Alignment from Exonerate_protein2genome GTGTGTCCATGGGAAATGCGTGCCGCTCGACGCTCTTGCCTACAGCTGCCAGTGCCAGGATGGGTACTCGGGGGCTCTGTGCAACCAGGTCGGGGCTGTGGCAGAGCCCTGTGGGGGCTTGCAGTGCCTGCATGGTCACTGCCAGGCCTCTGCCACCAAAGGGGCACACTGTGTGTGCAGCCCAGGCTTTTCAGGCGAGCTGTGTGAGCAAG tatattaaaacaattttttctcagccaactctcctctcctgcctctccagATGTGTCCATGGAAAATGTGTGCCACTCGATGCACTTGCATATAGCTGTGAATGCCAAGATGGGTACTCAGGAGCTCTGTGCAATCAGGTGGGGGCAGTTACTGATCCTTGCGGGGCCTTGCAGTGCCTGCACGGTCATTGCCAGGCCTCAGCAACTATTGGAGCCCATTGTGTGTGCAGCCCAGGTTTCTCAGGCAAACTGTGGGAACAGGgtatccgccctcttctggctagccctctggttgcaatactcctcatgatt Alignment from Exonerate_coding2genome GTGTGTCCATGGGAAATGCGTGCCGCTCGACGCTCTTGCCTACAGCTGCCAGTGCCAGGATGGGTACTCGGGGGCTCTGTGCAACCAGGTCGGGGCTGTGGCAGAGCCCTGTGGGGGCTTGCAGTGCCTGCATGGTCACTGCCAGGCCTCTGCCACCAAAGGGGCACACTGTGTGTGCAGCCCAGGCTTTTCAGGCGAGCTGTGTGAGCAAG tatattaaaacaattttttctcagccaactctcctctcctgcctctccagATGTGTCCATGGAAAATGTGTGCCACTCGATGCACTTGCATATAGCTGTGAATGCCAAGATGGGTACTCAGGAGCTCTGTGCAATCAGGTGGGGGCAGTTACTGATCCTTGCGGGGCCTTGCAGTGCCTGCACGGTCATTGCCAGGCCTCAGCAACTATTGGAGCCCATTGTGTGTGCAGCCCAGGTTTCTCAGGCAAACTGTGGGAACAGGgtatccgccctcttctggctagccctctggttgcaatactcctcatgatt Alignment from GeneWise GTGTGTCCATGGGAAATGCGTGCCGCTCGACGCTCTTGCCTACAGCTGCCAGTGCCAGGATGGGTACTCGGGGGCTCTGTGCAACCAGGTCGGGGCTGTGGCAGAGCCCTGTGGGGGCTTGCAGTGCCTGCATGGTCACTGCCAGGCCTCTGCCACCAAAGGGGCACACTGTGTGTGCAGCCCAGGCTTTTCAGGCGAGCTGTGTGAGCAAG tatattaaaacaattttttctcagccaactctcctctcctgcctctccagATGTGTCCATGGAAAATGTGTGCCACTCGATGCACTTGCATATAGCTGTGAATGCCAAGATGGGTACTCAGGAGCTCTGTGCAATCAGGTGGGGGCAGTTACTGATCCTTGCGGGGCCTTGCAGTGCCTGCACGGTCATTGCCAGGCCTCAGCAACTATTGGAGCCCATTGTGTGTGCAGCCCAGGTTTCTCAGGCAAACTGTGGGAACAGGgtatccgccctcttctggctagccctctggttgcaatactcctcatgatt #### Slit1_ID8205_33 --> 0 - 2 Original Alignment GTCTCCACAGCAGAGGACAATGGGATTCTCCTATATAATGGGGACAATGACCACATTGCAGTTGAGCTGTACCAGGGCCATGTCCGTGTTAGTTATGACCCAGGCAGCTACCCCAGCTCTGCTATCTACag tcccatagtaaatggggtgacatagtagcttctcgccctgacttctgaagGTCTCAACAGCAGAGGACAATGGGATTCTCCTATACAATGGTGACAATGACCATATTGCAGTAGAACTATACCAGGAACATGTCCGTGTTAGCTATGATCCAGGCAGCTATCCCACCTCTGCTATCTACaggtaagaacctgtcatgccaacattttttcagtatggcatgccagaggagt Alignment from CESAR GTCTCCACAGCAGAGGACAATGGGATTCTCCTATATAATGGGGACAATGACCACATTGCAGTTGAGCTGTACCAGGGCCATGTCCGTGTTAGTTATGACCCAGGCAGCTACCCCAGCTCTGCTATCTACag tcccatagtaaatggggtgacatagtagcttctcgccctgacttctgaagGTCTCAACAGCAGAGGACAATGGGATTCTCCTATACAATGGTGACAATGACCATATTGCAGTAGAACTATACCAGGAACATGTCCGTGTTAGCTATGATCCAGGCAGCTATCCCACCTCTGCTATCTACaggtaagaacctgtcatgccaacattttttcagtatggcatgccagaggagt Alignment from Spaln_aa2Genome GTCTCCACAGCAGAGGACAATGGGATTCTCCTATATAATGGGGACAATGACCACATTGCAGTTGAGCTGTACCAGGGCCATGTCCGTGTTAGTTATGACCCAGGCAGCTACCCCAGCTCTGCTATCTACAG tcccatagtaaatggggtgacatagtagcttctcgccctgacttctgaagGTCTCAACAGCAGAGGACAATGGGATTCTCCTATACAATGGTGACAATGACCATATTGCAGTAGAACTATACCAGGAACATGTCCGTGTTAGCTATGATCCAGGCAGCTATCCCACCTCTGCTATCTACAGgtaagaacctgtcatgccaacattttttcagtatggcatgccagaggagt Alignment from Spaln_nt2Genome GTCTCCACAGCAGAGGACAATGGGATTCTCCTATATAATGGGGACAATGACCACATTGCAGTTGAGCTGTACCAGGGCCATGTCCGTGTTAGTTATGACCCAGGCAGCTACCCCAGCTCTGCTATCTACAG tcccatagtaaatggggtgacatagtagcttctcgccctgacttctgaagGTCTCAACAGCAGAGGACAATGGGATTCTCCTATACAATGGTGACAATGACCATATTGCAGTAGAACTATACCAGGAACATGTCCGTGTTAGCTATGATCCAGGCAGCTATCCCACCTCTGCTATCTACAGgtaagaacctgtcatgccaacattttttcagtatggcatgccagaggagt Alignment from Pairagon GTCTCCACAGCAGAGGACAATGGGATTCTCCTATATAATGGGGACAATGACCACATTGCAGTTGAGCTGTACCAGGGCCATGTCCGTGTTAGTTATGACCCAGGCAGCTACCCCAGCTCTGCTATCTACAG tcccatagtaaatggggtgacatagtagcttctcgccctgacttctgaagGTCTCAACAGCAGAGGACAATGGGATTCTCCTATACAATGGTGACAATGACCATATTGCAGTAGAACTATACCAGGAACATGTCCGTGTTAGCTATGATCCAGGCAGCTATCCCACCTCTGCTATCTACAGgtaagaacctgtcatgccaacattttttcagtatggcatgccagaggagt Alignment from Exonerate_protein2genome GTCTCCACAGCAGAGGACAATGGGATTCTCCTATATAATGGGGACAATGACCACATTGCAGTTGAGCTGTACCAGGGCCATGTCCGTGTTAGTTATGACCCAGGCAGCTACCCCAGCTCTGCTATCTACAG tcccatagtaaatggggtgacatagtagcttctcgccctgacttctgaagGTCTCAACAGCAGAGGACAATGGGATTCTCCTATACAATGGTGACAATGACCATATTGCAGTAGAACTATACCAGGAACATGTCCGTGTTAGCTATGATCCAGGCAGCTATCCCACCTCTGCTATCTACAGgtaagaacctgtcatgccaacattttttcagtatggcatgccagaggagt Alignment from Exonerate_coding2genome GTCTCCACAGCAGAGGACAATGGGATTCTCCTATATAATGGGGACAATGACCACATTGCAGTTGAGCTGTACCAGGGCCATGTCCGTGTTAGTTATGACCCAGGCAGCTACCCCAGCTCTGCTATCTACAG tcccatagtaaatggggtgacatagtagcttctcgccctgacttctgaagGTCTCAACAGCAGAGGACAATGGGATTCTCCTATACAATGGTGACAATGACCATATTGCAGTAGAACTATACCAGGAACATGTCCGTGTTAGCTATGATCCAGGCAGCTATCCCACCTCTGCTATCTACAGgtaagaacctgtcatgccaacattttttcagtatggcatgccagaggagt Alignment from GeneWise GTCTCCACAGCAGAGGACAATGGGATTCTCCTATATAATGGGGACAATGACCACATTGCAGTTGAGCTGTACCAGGGCCATGTCCGTGTTAGTTATGACCCAGGCAGCTACCCCAGCTCTGCTATCTACAG tcccatagtaaatggggtgacatagtagcttctcgccctgacttctgaagGTCTCAACAGCAGAGGACAATGGGATTCTCCTATACAATGGTGACAATGACCATATTGCAGTAGAACTATACCAGGAACATGTCCGTGTTAGCTATGATCCAGGCAGCTATCCCACCTCTGCTATCTACAGgtaagaacctgtcatgccaacattttttcagtatggcatgccagaggagt #### Slit1_ID8212_27 --> 2 - 0 Original Alignment gtCCCCCCAGCCTGGCAGTTCAGGCCAAGTGTGATCCCTGCTTGTCCAGCCCATGCCAGAACCAGGGCACCTGCCACAATGACCCTCTTGAGGTATACAGGTGTACCTGCCCCAGTGGCTACAAG cttcctatttgtccctctcttctctaccagtttcctctttgcatttctaggtCCCCCAAGCTTGGCAGTTCAGGCCAAGTGTGATCCTTGTTTGGCTAGCCCATGCCAGAACCAAGGCACCTGCCATAATGGCCCTCTTGAAGTATATAGGTGCACCTGTCCCACTGGCTACAAGgtattaaacctaaggtataaggttctttcttcctccacagagcatggcta Alignment from CESAR gtCCCCCCAGCCTGGCAGTTCAGGCCAAGTGTGATCCCTGCTTGTCCAGCCCATGCCAGAACCAGGGCACCTGCCACAATGACCCTCTTGAGGTATACAGGTGTACCTGCCCCAGTGGCTACAAG cttcctatttgtccctctcttctctaccagtttcctctttgcatttctaggtCCCCCAAGCTTGGCAGTTCAGGCCAAGTGTGATCCTTGTTTGGCTAGCCCATGCCAGAACCAAGGCACCTGCCATAATGGCCCTCTTGAAGTATATAGGTGCACCTGTCCCACTGGCTACAAGgtattaaacctaaggtataaggttctttcttcctccacagagcatggcta Alignment from Spaln_aa2Genome GTCCCCCCAGCCTGGCAGTTCAGGCCAAGTGTGATCCCTGCTTGTCCAGCCCATGCCAGAACCAGGGCACCTGCCACAATGACCCTCTTGAGGTATACAGGTGTACCTGCCCCAGTGGCTACAAG cttcctatttgtccctctcttctctaccagtttcctctttgcatttctagGTCCCCCAAGCTTGGCAGTTCAGGCCAAGTGTGATCCTTGTTTGGCTAGCCCATGCCAGAACCAAGGCACCTGCCATAATGGCCCTCTTGAAGTATATAGGTGCACCTGTCCCACTGGCTACAAGgtattaaacctaaggtataaggttctttcttcctccacagagcatggcta Alignment from Spaln_nt2Genome GTCCCCCCAGCCTGGCAGTTCAGGCCAAGTGTGATCCCTGCTTGTCCAGCCCATGCCAGAACCAGGGCACCTGCCACAATGACCCTCTTGAGGTATACAGGTGTACCTGCCCCAGTGGCTACAAG cttcctatttgtccctctcttctctaccagtttcctctttgcatttctagGTCCCCCAAGCTTGGCAGTTCAGGCCAAGTGTGATCCTTGTTTGGCTAGCCCATGCCAGAACCAAGGCACCTGCCATAATGGCCCTCTTGAAGTATATAGGTGCACCTGTCCCACTGGCTACAAGgtattaaacctaaggtataaggttctttcttcctccacagagcatggcta Alignment from Pairagon GTCCCCCCAGCCTGGCAGTTCAGGCCAAGTGTGATCCCTGCTTGTCCAGCCCATGCCAGAACCAGGGCACCTGCCACAATGACCCTCTTGAGGTATACAGGTGTACCTGCCCCAGTGGCTACAAG cttcctatttgtccctctcttctctaccagtttcctctttgcatttctagGTCCCCCAAGCTTGGCAGTTCAGGCCAAGTGTGATCCTTGTTTGGCTAGCCCATGCCAGAACCAAGGCACCTGCCATAATGGCCCTCTTGAAGTATATAGGTGCACCTGTCCCACTGGCTACAAGgtattaaacctaaggtataaggttctttcttcctccacagagcatggcta Alignment from Exonerate_protein2genome GTCCCCCCAGCCTGGCAGTTCAGGCCAAGTGTGATCCCTGCTTGTCCAGCCCATGCCAGAACCAGGGCACCTGCCACAATGACCCTCTTGAGGTATACAGGTGTACCTGCCCCAGTGGCTACAAG cttcctatttgtccctctcttctctaccagtttcctctttgcatttctagGTCCCCCAAGCTTGGCAGTTCAGGCCAAGTGTGATCCTTGTTTGGCTAGCCCATGCCAGAACCAAGGCACCTGCCATAATGGCCCTCTTGAAGTATATAGGTGCACCTGTCCCACTGGCTACAAGgtattaaacctaaggtataaggttctttcttcctccacagagcatggcta Alignment from Exonerate_coding2genome GTCCCCCCAGCCTGGCAGTTCAGGCCAAGTGTGATCCCTGCTTGTCCAGCCCATGCCAGAACCAGGGCACCTGCCACAATGACCCTCTTGAGGTATACAGGTGTACCTGCCCCAGTGGCTACAAG cttcctatttgtccctctcttctctaccagtttcctctttgcatttctagGTCCCCCAAGCTTGGCAGTTCAGGCCAAGTGTGATCCTTGTTTGGCTAGCCCATGCCAGAACCAAGGCACCTGCCATAATGGCCCTCTTGAAGTATATAGGTGCACCTGTCCCACTGGCTACAAGgtattaaacctaaggtataaggttctttcttcctccacagagcatggcta Alignment from GeneWise GTCCCCCCAGCCTGGCAGTTCAGGCCAAGTGTGATCCCTGCTTGTCCAGCCCATGCCAGAACCAGGGCACCTGCCACAATGACCCTCTTGAGGTATACAGGTGTACCTGCCCCAGTGGCTACAAG cttcctatttgtccctctcttctctaccagtttcctctttgcatttctagGTCCCCCAAGCTTGGCAGTTCAGGCCAAGTGTGATCCTTGTTTGGCTAGCCCATGCCAGAACCAAGGCACCTGCCATAATGGCCCTCTTGAAGTATATAGGTGCACCTGTCCCACTGGCTACAAGgtattaaacctaaggtataaggttctttcttcctccacagagcatggcta #### Slit1_ID8214_25 --> 1 - 2 Original Alignment gTCTTTGCATGGCAATGATGTCTCCACCCTCCAAGAGGGCATCTTTGCAGACGTGACGTCTCTGTCTCACct cattaccttggacccacatccaatcctcactggcttccctctgccctcaggTCCTTACATGGCAATGATGTTTCCACTCTTCAGGAGGGCATCTATGCAGATTTGAGGTCTCTATCTCACctgtagatctctgagagctgttaaattcaattaggcagcacctaaagtgtac Alignment from CESAR gTCTTTGCATGGCAATGATGTCTCCACCCTCCAAGAGGGCATCTTTGCAGACGTGACGTCTCTGTCTCACct cattaccttggacccacatccaatcctcactggcttccctctgccctcaggTCCTTACATGGCAATGATGTTTCCACTCTTCAGGAGGGCATCTATGCAGATTTGAGGTCTCTATCTCACctgtagatctctgagagctgttaaattcaattaggcagcacctaaagtgtac Alignment from Spaln_aa2Genome GTCTTTGCATGGCAATGATGTCTCCACCCTCCAAGAGGGCATCTTTGCAGACGTGACGTCTCTGTCTCACCT cattaccttggacccacatccaatcctcactggcttccctctgccctcagGTCCTTACATGGCAATGATGTTTCCACTCTTCAGGAGGGCATCTATGCAGATTTGAGGTCTCTATCTCACCTgtagatctctgagagctgttaaattcaattaggcagcacctaaagtgtac Alignment from Spaln_nt2Genome GTCTTTGCATGGCAATGATGTCTCCACCCTCCAAGAGGGCATCTTTGCAGACGTGACGTCTCTGTCTCACCT cattaccttggacccacatccaatcctcactggcttccctctgccctcagGTCCTTACATGGCAATGATGTTTCCACTCTTCAGGAGGGCATCTATGCAGATTTGAGGTCTCTATCTCACCTgtagatctctgagagctgttaaattcaattaggcagcacctaaagtgtac Alignment from Pairagon GTCTTTGCATGGCAATGATGTCTCCACCCTCCAAGAGGGCATCTTTGCAGACGTGACGTCTCTGTCTCACCT cattaccttggacccacatccaatcctcactggcttccctctgccctcagGTCCTTACATGGCAATGATGTTTCCACTCTTCAGGAGGGCATCTATGCAGATTTGAGGTCTCTATCTCACCTgtagatctctgagagctgttaaattcaattaggcagcacctaaagtgtac Alignment from Exonerate_protein2genome GTCTTTGCATGGCAATGATGTCTCCACCCTCCAAGAGGGCATCTTTGCAGACGTGACGTCTCTGTCTCACCT cattaccttggacccacatccaatcctcactggcttccctctgccctcagGTCCTTACATGGCAATGATGTTTCCACTCTTCAGGAGGGCATCTATGCAGATTTGAGGTCTCTATCTCACCTgtagatctctgagagctgttaaattcaattaggcagcacctaaagtgtac Alignment from Exonerate_coding2genome GTCTTTGCATGGCAATGATGTCTCCACCCTCCAAGAGGGCATCTTTGCAGACGTGACGTCTCTGTCTCACCT cattaccttggacccacatccaatcctcactggcttccctctgccctcagGTCCTTACATGGCAATGATGTTTCCACTCTTCAGGAGGGCATCTATGCAGATTTGAGGTCTCTATCTCACCTgtagatctctgagagctgttaaattcaattaggcagcacctaaagtgtac Alignment from GeneWise GTCTTTGCATGGCAATGATGTCTCCACCCTCCAAGAGGGCATCTTTGCAGACGTGACGTCTCTGTCTCACCT cattaccttggacccacatccaatcctcactggcttccctctgccctcagGTCCTTACATGGCAATGATGTTTCCACTCTTCAGGAGGGCATCTATGCAGATTTGAGGTCTCTATCTCACCTgtagatctctgagagctgttaaattcaattaggcagcacctaaagtgtac #### Slit1_ID8217_22 --> 1 - 2 Original Alignment cTATTTGGATGGGAACCAGTTCACACTCGTTCCGGGACAGCTGTCTACCTTCAAGTATCTGCAGCTCgt gatgctctcatactgcatactagcatccccttggcttttgctcaatacagcTACTTAGATGGGAACCAGTTTGCACTTGTACCAGGAAAGTTGTCTGCTTTCAAATATCTTCAACTTgtgtgagttatggcgtccctggcgatactaagtcattggaagttactacctg Alignment from CESAR cTATTTGGATGGGAACCAGTTCACACTCGTTCCGGGACAGCTGTCTACCTTCAAGTATCTGCAGCTCgt gatgctctcatactgcatactagcatccccttggcttttgctcaatacagcTACTTAGATGGGAACCAGTTTGCACTTGTACCAGGAAAGTTGTCTGCTTTCAAATATCTTCAACTTgtgtgagttatggcgtccctggcgatactaagtcattggaagttactacctg Alignment from Spaln_aa2Genome CTATTTGGATGGGAACCAGTTCACACTCGTTCCGGGACAGCTGTCTACCTTCAAGTATCTGCAGCTCGT gatgctctcatactgcatactagcatccccttggcttttgctcaatacagCTACTTAGATGGGAACCAGTTTGCACTTGTACCAGGAAAGTTGTCTGCTTTCAAATATCTTCAACTTGTgtgagttatggcgtccctggcgatactaagtcattggaagttactacctg Alignment from Spaln_nt2Genome CTATTTGGATGGGAACCAGTTCACACTCGTTCCGGGACAGCTGTCTACCTTCAAGTATCTGCAGCTCGT gatgctctcatactgcatactagcatccccttggcttttgctcaatacagCTACTTAGATGGGAACCAGTTTGCACTTGTACCAGGAAAGTTGTCTGCTTTCAAATATCTTCAACTTGTgtgagttatggcgtccctggcgatactaagtcattggaagttactacctg Alignment from Pairagon CTATTTGGATGGGAACCAGTTCACACTCGTTCCGGGACAGCTGTCTACCTTCAAGTATCTGCAGCTCGT gatgctctcatactgcatactagcatccccttggcttttgctcaatacagCTACTTAGATGGGAACCAGTTTGCACTTGTACCAGGAAAGTTGTCTGCTTTCAAATATCTTCAACTTGTgtgagttatggcgtccctggcgatactaagtcattggaagttactacctg Alignment from Exonerate_protein2genome CTATTTGGATGGGAACCAGTTCACACTCGTTCCGGGACAGCTGTCTACCTTCAAGTATCTGCAGCTCGT gatgctctcatactgcatactagcatccccttggcttttgctcaatacagCTACTTAGATGGGAACCAGTTTGCACTTGTACCAGGAAAGTTGTCTGCTTTCAAATATCTTCAACTTGTgtgagttatggcgtccctggcgatactaagtcattggaagttactacctg Alignment from Exonerate_coding2genome CTATTTGGATGGGAACCAGTTCACACTCGTTCCGGGACAGCTGTCTACCTTCAAGTATCTGCAGCTCGT gatgctctcatactgcatactagcatccccttggcttttgctcaatacagCTACTTAGATGGGAACCAGTTTGCACTTGTACCAGGAAAGTTGTCTGCTTTCAAATATCTTCAACTTGTgtgagttatggcgtccctggcgatactaagtcattggaagttactacctg Alignment from GeneWise CTATTTGGATGGGAACCAGTTCACACTCGTTCCGGGACAGCTGTCTACCTTCAAGTATCTGCAGCTCGT gatgctctcatactgcatactagcatccccttggcttttgctcaatacagCTACTTAGATGGGAACCAGTTTGCACTTGTACCAGGAAAGTTGTCTGCTTTCAAATATCTTCAACTTGTgtgagttatggcgtccctggcgatactaagtcattggaagttactacctg #### Slit1_ID8218_21 --> 2 - 2 Original Alignment gcCAGGAGGAGGTGGGCTGCCTGCCCCGCCCACAGTGCCCCCAGGAGTGTGCCTGCCTGGACACAGTGGTCCGCTGCAGCAACAAGCACCTCCAGGCTCTGCCCAAGGGCATCCCCAAGAATGTCACAGAAct cctgagaataagatgtgcataccatccactcttgtcccgcccctccccaggtCAGGAGGAAGTGGGCTGTCTTCCCCGTCCTCAATGTCCACAGGAGTGTGCTTGCCTGGATCCTGTGATCCGATGCAGTAACAAGCACCTCCAGGCTTTGCCTAAGGGTATCCCCAAGAATGTTACAGAGctgtggctcgtgctatattataatttgataaccctcgcttaagccactctgg Alignment from CESAR gcCAGGAGGAGGTGGGCTGCCTGCCCCGCCCACAGTGCCCCCAGGAGTGTGCCTGCCTGGACACAGTGGTCCGCTGCAGCAACAAGCACCTCCAGGCTCTGCCCAAGGGCATCCCCAAGAATGTCACAGAAct cctgagaataagatgtgcataccatccactcttgtcccgcccctccccaggtCAGGAGGAAGTGGGCTGTCTTCCCCGTCCTCAATGTCCACAGGAGTGTGCTTGCCTGGATCCTGTGATCCGATGCAGTAACAAGCACCTCCAGGCTTTGCCTAAGGGTATCCCCAAGAATGTTACAGAGctgtggctcgtgctatattataatttgataaccctcgcttaagccactctgg Alignment from Spaln_aa2Genome GCCAGGAGGAGGTGGGCTGCCTGCCCCGCCCACAGTGCCCCCAGGAGTGTGCCTGCCTGGACACAGTGGTCCGCTGCAGCAACAAGCACCTCCAGGCTCTGCCCAAGGGCATCCCCAAGAATGTCACAGAACT cctgagaataagatgtgcataccatccactcttgtcccgcccctccccagGTCAGGAGGAAGTGGGCTGTCTTCCCCGTCCTCAATGTCCACAGGAGTGTGCTTGCCTGGATCCTGTGATCCGATGCAGTAACAAGCACCTCCAGGCTTTGCCTAAGGGTATCCCCAAGAATGTTACAGAGCTgtggctcgtgctatattataatttgataaccctcgcttaagccactctgg Alignment from Spaln_nt2Genome GCCAGGAGGAGGTGGGCTGCCTGCCCCGCCCACAGTGCCCCCAGGAGTGTGCCTGCCTGGACACAGTGGTCCGCTGCAGCAACAAGCACCTCCAGGCTCTGCCCAAGGGCATCCCCAAGAATGTCACAGAACT cctgagaataagatgtgcataccatccactcttgtcccgcccctccccagGTCAGGAGGAAGTGGGCTGTCTTCCCCGTCCTCAATGTCCACAGGAGTGTGCTTGCCTGGATCCTGTGATCCGATGCAGTAACAAGCACCTCCAGGCTTTGCCTAAGGGTATCCCCAAGAATGTTACAGAGCTgtggctcgtgctatattataatttgataaccctcgcttaagccactctgg Alignment from Pairagon GCCAGGAGGAGGTGGGCTGCCTGCCCCGCCCACAGTGCCCCCAGGAGTGTGCCTGCCTGGACACAGTGGTCCGCTGCAGCAACAAGCACCTCCAGGCTCTGCCCAAGGGCATCCCCAAGAATGTCACAGAACT cctgagaataagatgtgcataccatccactcttgtcccgcccctccccagGTCAGGAGGAAGTGGGCTGTCTTCCCCGTCCTCAATGTCCACAGGAGTGTGCTTGCCTGGATCCTGTGATCCGATGCAGTAACAAGCACCTCCAGGCTTTGCCTAAGGGTATCCCCAAGAATGTTACAGAGCTgtggctcgtgctatattataatttgataaccctcgcttaagccactctgg Alignment from Exonerate_protein2genome GCCAGGAGGAGGTGGGCTGCCTGCCCCGCCCACAGTGCCCCCAGGAGTGTGCCTGCCTGGACACAGTGGTCCGCTGCAGCAACAAGCACCTCCAGGCTCTGCCCAAGGGCATCCCCAAGAATGTCACAGAACT cctgagaataagatgtgcataccatccactcttgtcccgcccctccccagGTCAGGAGGAAGTGGGCTGTCTTCCCCGTCCTCAATGTCCACAGGAGTGTGCTTGCCTGGATCCTGTGATCCGATGCAGTAACAAGCACCTCCAGGCTTTGCCTAAGGGTATCCCCAAGAATGTTACAGAGCTgtggctcgtgctatattataatttgataaccctcgcttaagccactctgg Alignment from Exonerate_coding2genome GCCAGGAGGAGGTGGGCTGCCTGCCCCGCCCACAGTGCCCCCAGGAGTGTGCCTGCCTGGACACAGTGGTCCGCTGCAGCAACAAGCACCTCCAGGCTCTGCCCAAGGGCATCCCCAAGAATGTCACAGAACT cctgagaataagatgtgcataccatccactcttgtcccgcccctccccagGTCAGGAGGAAGTGGGCTGTCTTCCCCGTCCTCAATGTCCACAGGAGTGTGCTTGCCTGGATCCTGTGATCCGATGCAGTAACAAGCACCTCCAGGCTTTGCCTAAGGGTATCCCCAAGAATGTTACAGAGCTgtggctcgtgctatattataatttgataaccctcgcttaagccactctgg Alignment from GeneWise GCCAGGAGGAGGTGGGCTGCCTGCCCCGCCCACAGTGCCCCCAGGAGTGTGCCTGCCTGGACACAGTGGTCCGCTGCAGCAACAAGCACCTCCAGGCTCTGCCCAAGGGCATCCCCAAGAATGTCACAGAACT cctgagaataagatgtgcataccatccactcttgtcccgcccctccccagGTCAGGAGGAAGTGGGCTGTCTTCCCCGTCCTCAATGTCCACAGGAGTGTGCTTGCCTGGATCCTGTGATCCGATGCAGTAACAAGCACCTCCAGGCTTTGCCTAAGGGTATCCCCAAGAATGTTACAGAGCTgtggctcgtgctatattataatttgataaccctcgcttaagccactctgg #### Slit1_ID8220_19 --> 1 - 2 Original Alignment gATGCTGAGGAACAACCGTATCAGCTGTATCCACAACGACAGCTTCACCGGGCTGCGCAACGTGCGGCTCCTGTCTCTCTATGACAACCACATCACCACCATCTCCCCTGGAGCCTTTGACACTCTCCAGGCCCTGTCCACAct tatgtctcagtgcaacatttatatggggcatgttcttcctggaatggcaggATGTTGAGGAACAATCGCATCAGCTGTGTCCACAATGACAGCTTCACTGGGCTGCGCAATGTGTGGCTCCTGTCTCTATATGAGATATACATAACCACCATCTCCGCTGGAACCTTTGACACTTTGCAGGCCCTGTCTACTctgtgagtcagtacacaaggagcagaagatgtcaccatatcctggtagtgta Alignment from CESAR gATGCTGAGGAACAACCGTATCAGCTGTATCCACAACGACAGCTTCACCGGGCTGCGCAACGTGCGGCTCCTGTCTCTCTATGACAACCACATCACCACCATCTCCCCTGGAGCCTTTGACACTCTCCAGGCCCTGTCCACAct tatgtctcagtgcaacatttatatggggcatgttcttcctggaatggcaggATGTTGAGGAACAATCGCATCAGCTGTGTCCACAATGACAGCTTCACTGGGCTGCGCAATGTGTGGCTCCTGTCTCTATATGAGATATACATAACCACCATCTCCGCTGGAACCTTTGACACTTTGCAGGCCCTGTCTACTctgtgagtcagtacacaaggagcagaagatgtcaccatatcctggtagtgta Alignment from Spaln_aa2Genome GATGCTGAGGAACAACCGTATCAGCTGTATCCACAACGACAGCTTCACCGGGCTGCGCAACGTGCGGCTCCTGTCTCTCTATGACAACCACATCACCACCATCTCCCCTGGAGCCTTTGACACTCTCCAGGCCCTGTCCACACT tatgtctcagtgcaacatttatatggggcatgttcttcctggaatggcagGATGTTGAGGAACAATCGCATCAGCTGTGTCCACAATGACAGCTTCACTGGGCTGCGCAATGTGTGGCTCCTGTCTCTATATGAGATATACATAACCACCATCTCCGCTGGAACCTTTGACACTTTGCAGGCCCTGTCTACTCTgtgagtcagtacacaaggagcagaagatgtcaccatatcctggtagtgta Alignment from Spaln_nt2Genome GATGCTGAGGAACAACCGTATCAGCTGTATCCACAACGACAGCTTCACCGGGCTGCGCAACGTGCGGCTCCTGTCTCTCTATGACAACCACATCACCACCATCTCCCCTGGAGCCTTTGACACTCTCCAGGCCCTGTCCACACT tatgtctcagtgcaacatttatatggggcatgttcttcctggaatggcagGATGTTGAGGAACAATCGCATCAGCTGTGTCCACAATGACAGCTTCACTGGGCTGCGCAATGTGTGGCTCCTGTCTCTATATGAGATATACATAACCACCATCTCCGCTGGAACCTTTGACACTTTGCAGGCCCTGTCTACTCTgtgagtcagtacacaaggagcagaagatgtcaccatatcctggtagtgta Alignment from Pairagon GATGCTGAGGAACAACCGTATCAGCTGTATCCACAACGACAGCTTCACCGGGCTGCGCAACGTGCGGCTCCTGTCTCTCTATGACAACCACATCACCACCATCTCCCCTGGAGCCTTTGACACTCTCCAGGCCCTGTCCACACT tatgtctcagtgcaacatttatatggggcatgttcttcctggaatggcagGATGTTGAGGAACAATCGCATCAGCTGTGTCCACAATGACAGCTTCACTGGGCTGCGCAATGTGTGGCTCCTGTCTCTATATGAGATATACATAACCACCATCTCCGCTGGAACCTTTGACACTTTGCAGGCCCTGTCTACTCTgtgagtcagtacacaaggagcagaagatgtcaccatatcctggtagtgta Alignment from Exonerate_protein2genome GATGCTGAGGAACAACCGTATCAGCTGTATCCACAACGACAGCTTCACCGGGCTGCGCAACGTGCGGCTCCTGTCTCTCTATGACAACCACATCACCACCATCTCCCCTGGAGCCTTTGACACTCTCCAGGCCCTGTCCACACT tatgtctcagtgcaacatttatatggggcatgttcttcctggaatggcagGATGTTGAGGAACAATCGCATCAGCTGTGTCCACAATGACAGCTTCACTGGGCTGCGCAATGTGTGGCTCCTGTCTCTATATGAGATATACATAACCACCATCTCCGCTGGAACCTTTGACACTTTGCAGGCCCTGTCTACTCTgtgagtcagtacacaaggagcagaagatgtcaccatatcctggtagtgta Alignment from Exonerate_coding2genome GATGCTGAGGAACAACCGTATCAGCTGTATCCACAACGACAGCTTCACCGGGCTGCGCAACGTGCGGCTCCTGTCTCTCTATGACAACCACATCACCACCATCTCCCCTGGAGCCTTTGACACTCTCCAGGCCCTGTCCACACT tatgtctcagtgcaacatttatatggggcatgttcttcctggaatggcagGATGTTGAGGAACAATCGCATCAGCTGTGTCCACAATGACAGCTTCACTGGGCTGCGCAATGTGTGGCTCCTGTCTCTATATGAGATATACATAACCACCATCTCCGCTGGAACCTTTGACACTTTGCAGGCCCTGTCTACTCTgtgagtcagtacacaaggagcagaagatgtcaccatatcctggtagtgta Alignment from GeneWise GATGCTGAGGAACAACCGTATCAGCTGTATCCACAACGACAGCTTCACCGGGCTGCGCAACGTGCGGCTCCTGTCTCTCTATGACAACCACATCACCACCATCTCCCCTGGAGCCTTTGACACTCTCCAGGCCCTGTCCACACT tatgtctcagtgcaacatttatatggggcatgttcttcctggaatggcagGATGTTGAGGAACAATCGCATCAGCTGTGTCCACAATGACAGCTTCACTGGGCTGCGCAATGTGTGGCTCCTGTCTCTATATGAGATATACATAACCACCATCTCCGCTGGAACCTTTGACACTTTGCAGGCCCTGTCTACTCTgtgagtcagtacacaaggagcagaagatgtcaccatatcctggtagtgta #### Slit1_ID8229_10 --> 1 - 2 Original Alignment cCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGat gatggcaaggactcagcatttccgtattttttttaattctttatcctcagtCACTTAGAATTGAATGAAATACGCTCCATCCCACCAAGAGCATTCTCTCCCTACAGAAAGCTATGGAGGatgtaagagggcttgcataacttcagatgaacagctgcagctgtcttcctct Alignment from CESAR cCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGat gatggcaaggactcagcatttccgtattttttttaattctttatcctcagtCACTTAGAATTGAATGAAATACGCTCCATCCCACCAAGAGCATTCTCTCCCTACAGAAAGCTATGGAGGatgtaagagggcttgcataacttcagatgaacagctgcagctgtcttcctct Alignment from Spaln_aa2Genome CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT gatggcaaggactcagcatttccgtattttttttaattctttatcctcagTCACTTAGAATTGAATGAAATACGCTCCATCCCACCAAGAGCATTCTCTCCCTACAGAAAGCTATGGAGGATgtaagagggcttgcataacttcagatgaacagctgcagctgtcttcctct Alignment from Spaln_nt2Genome CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT gatggcaaggactcagcatttccgtattttttttaattctttatcctcagTCACTTAGAATTGAATGAAATACGCTCCATCCCACCAAGAGCATTCTCTCCCTACAGAAAGCTATGGAGGATgtaagagggcttgcataacttcagatgaacagctgcagctgtcttcctct Alignment from Pairagon CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT gatggcaaggactcagcatttccgtattttttttaattctttatcctcagTCACTTAGAATTGAATGAAATACGCTCCATCCCACCAAGAGCATTCTCTCCCTACAGAAAGCTATGGAGGATgtaagagggcttgcataacttcagatgaacagctgcagctgtcttcctct Alignment from Exonerate_protein2genome CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT gatggcaaggactcagcatttccgtattttttttaattctttatcctcagTCACTTAGAATTGAATGAAATACGCTCCATCCCACCAAGAGCATTCTCTCCCTACAGAAAGCTATGGAGGATgtaagagggcttgcataacttcagatgaacagctgcagctgtcttcctct Alignment from Exonerate_coding2genome CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT gatggcaaggactcagcatttccgtattttttttaattctttatcctcagTCACTTAGAATTGAATGAAATACGCTCCATCCCACCAAGAGCATTCTCTCCCTACAGAAAGCTATGGAGGATgtaagagggcttgcataacttcagatgaacagctgcagctgtcttcctct Alignment from GeneWise CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT gatggcaaggactcagcatttccgtattttttttaattctttatcctcagTCACTTAGAATTGAATGAAATACGCTCCATCCCACCAAGAGCATTCTCTCCCTACAGAAAGCTATGGAGGATgtaagagggcttgcataacttcagatgaacagctgcagctgtcttcctct #### Slit1_ID8231_8 --> 1 - 1 Original Alignment cCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAg caagttcctctatggggcccccaagaatcactcttttttttttgtcacagtCGGCTGCACACCAACCAACTGTCCTGTGACTGTCATCTCGCCTGGCTCTCTCACTGGCTGAGACAGAGGCCTACTGTTGGACTATTTACCCAATGCTCAGGGTCAGTTAGCCTTCGGGGCCTCAATGTGACAGAAGTTCAAAAGGGTGAATTTAGCTGCTCAggtgagtgattgtcttatctggcttccctcattggaatttttcctttccag Alignment from CESAR cCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAg caagttcctctatggggcccccaagaatcactcttttttttttgtcacagtCGGCTGCACACCAACCAACTGTCCTGTGACTGTCATCTCGCCTGGCTCTCTCACTGGCTGAGACAGAGGCCTACTGTTGGACTATTTACCCAATGCTCAGGGTCAGTTAGCCTTCGGGGCCTCAATGTGACAGAAGTTCAAAAGGGTGAATTTAGCTGCTCAggtgagtgattgtcttatctggcttccctcattggaatttttcctttccag Alignment from Spaln_aa2Genome CCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAG caagttcctctatggggcccccaagaatcactcttttttttttgtcacagTCGGCTGCACACCAACCAACTGTCCTGTGACTGTCATCTCGCCTGGCTCTCTCACTGGCTGAGACAGAGGCCTACTGTTGGACTATTTACCCAATGCTCAGGGTCAGTTAGCCTTCGGGGCCTCAATGTGACAGAAGTTCAAAAGGGTGAATTTAGCTGCTCAGgtgagtgattgtcttatctggcttccctcattggaatttttcctttccag Alignment from Spaln_nt2Genome CCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAG caagttcctctatggggcccccaagaatcactcttttttttttgtcacagTCGGCTGCACACCAACCAACTGTCCTGTGACTGTCATCTCGCCTGGCTCTCTCACTGGCTGAGACAGAGGCCTACTGTTGGACTATTTACCCAATGCTCAGGGTCAGTTAGCCTTCGGGGCCTCAATGTGACAGAAGTTCAAAAGGGTGAATTTAGCTGCTCAGgtgagtgattgtcttatctggcttccctcattggaatttttcctttccag Alignment from Pairagon CCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAG caagttcctctatggggcccccaagaatcactcttttttttttgtcacagTCGGCTGCACACCAACCAACTGTCCTGTGACTGTCATCTCGCCTGGCTCTCTCACTGGCTGAGACAGAGGCCTACTGTTGGACTATTTACCCAATGCTCAGGGTCAGTTAGCCTTCGGGGCCTCAATGTGACAGAAGTTCAAAAGGGTGAATTTAGCTGCTCAGgtgagtgattgtcttatctggcttccctcattggaatttttcctttccag Alignment from Exonerate_protein2genome CCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAG caagttcctctatggggcccccaagaatcactcttttttttttgtcacagTCGGCTGCACACCAACCAACTGTCCTGTGACTGTCATCTCGCCTGGCTCTCTCACTGGCTGAGACAGAGGCCTACTGTTGGACTATTTACCCAATGCTCAGGGTCAGTTAGCCTTCGGGGCCTCAATGTGACAGAAGTTCAAAAGGGTGAATTTAGCTGCTCAGgtgagtgattgtcttatctggcttccctcattggaatttttcctttccag Alignment from Exonerate_coding2genome CGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAG caagttcctctatggggcccccaagaatcactcttttttttttgtcacagtCGGCTGCACACCAACCAACTGTCCTGTGACTGTCATCTCGCCTGGCTCTCTCACTGGCTGAGACAGAGGCCTACTGTTGGACTATTTACCCAATGCTCAGGGTCAGTTAGCCTTCGGGGCCTCAATGTGACAGAAGTTCAAAAGGGTGAATTTAGCTGCTCAGgtgagtgattgtcttatctggcttccctcattggaatttttcctttccag Alignment from GeneWise CCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAG caagttcctctatggggcccccaagaatcactcttttttttttgtcacagTCGGCTGCACACCAACCAACTGTCCTGTGACTGTCATCTCGCCTGGCTCTCTCACTGGCTGAGACAGAGGCCTACTGTTGGACTATTTACCCAATGCTCAGGGTCAGTTAGCCTTCGGGGCCTCAATGTGACAGAAGTTCAAAAGGGTGAATTTAGCTGCTCAGgtgagtgattgtcttatctggcttccctcattggaatttttcctttccag #### Slit1_ID8249_4 --> 1 - 2 Original Alignment aCGGCTGAACCGC---AACCAGCTACAAGTGTTGCCTGAACTACTGTTCCAGAACAACCAGGCTCTATCCAGAct agaggttagctatcttccatcattgcatccaaatgtactgtcttccatagcCAGTTGAACCAAAACAACCATCTACAAGTGTTGCCTGACCTACTACTCCACAACAACCAGGCTCTATCTAGActgtattctggtcacattagttctccagttcactctatgtaattgtgtacgt Alignment from CESAR aCGGCTGAACCGC---AACCAGCTACAAGTGTTGCCTGAACTACTGTTCCAGAACAACCAGGCTCTATCCAGAct agaggttagctatcttccatcattgcatccaaatgtactgtcttccatagcCAGTTGAACCAAAACAACCATCTACAAGTGTTGCCTGACCTACTACTCCACAACAACCAGGCTCTATCTAGActgtattctggtcacattagttctccagttcactctatgtaattgtgtacgt Alignment from Spaln_aa2Genome ACGGCTGAACCGC---AACCAGCTACAAGTGTTGCCTGAACTACTGTTCCAGAACAACCAGGCTCTATCCAGACT agaggttagctatcttccatcattgcatccaaatgtactgtcttccatagCCAGTTGAACCAAAACAACCATCTACAAGTGTTGCCTGACCTACTACTCCACAACAACCAGGCTCTATCTAGACTgtattctggtcacattagttctccagttcactctatgtaattgtgtacgt Alignment from Spaln_nt2Genome ACGGCTGAACCG---CAACCAGCTACAAGTGTTGCCTGAACTACTGTTCCAGAACAACCAGGCTCTATCCAGACT agaggttagctatcttccatcattgcatccaaatgtactgtcttccatagCCAGTTGAACCAAAACAACCATCTACAAGTGTTGCCTGACCTACTACTCCACAACAACCAGGCTCTATCTAGACTgtattctggtcacattagttctccagttcactctatgtaattgtgtacgt Alignment from Pairagon ACGGCTGAACC---GCAACCAGCTACAAGTGTTGCCTGAACTACTGTTCCAGAACAACCAGGCTCTATCCAGACT agaggttagctatcttccatcattgcatccaaatgtactgtcttccatagCCAGTTGAACCAAAACAACCATCTACAAGTGTTGCCTGACCTACTACTCCACAACAACCAGGCTCTATCTAGACTgtattctggtcacattagttctccagttcactctatgtaattgtgtacgt Alignment from Exonerate_protein2genome ACGGCTGAACCGC---AACCAGCTACAAGTGTTGCCTGAACTACTGTTCCAGAACAACCAGGCTCTATCCAGACT agaggttagctatcttccatcattgcatccaaatgtactgtcttccatagCCAGTTGAACCAAAACAACCATCTACAAGTGTTGCCTGACCTACTACTCCACAACAACCAGGCTCTATCTAGACTgtattctggtcacattagttctccagttcactctatgtaattgtgtacgt Alignment from Exonerate_coding2genome agaggttagctatcttccatcattgcatccaaatgtactgtcttccatagccagttgaaccaaaacaaccatctacaagtgttgcctgacctactactccacaacaaccaggctctatctagactgtattctggtcacattagttctccagttcactctatgtaattgtgtacgt Alignment from GeneWise CTGAACCGCAACCAG---CTACAAGTGTTGCCTGAACTACTGTTCCAGAACAACCAGGCTCTATCCAGACT agaggttagctatcttccatcattgcatccaaatgtactgtcttccatagccagTTGAACCAAAACAACCATCTACAAGTGTTGCCTGACCTACTACTCCACAACAACCAGGCTCTATCTAGACTgtattctggtcacattagttctccagttcactctatgtaattgtgtacgt #### Slit1_ID8251_2 --> 1 - 2 Original Alignment gGAACTCAACGGCAACAACATCACTCGGATCCACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGtt tatcaagcctcatgattggcaattaacccacaccaatctctctttggcaggGAACTCAACAGCAACAACATCACTCGGATACACAAGAATGATTTTGCTGGCCTCAAGCAGCTTCGAGTGttgttggggcaaggctaagcagccatttgctatattcccctttagcctggct Alignment from CESAR gGAACTCAACGGCAACAACATCACTCGGATCCACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGtt tatcaagcctcatgattggcaattaacccacaccaatctctctttggcaggGAACTCAACAGCAACAACATCACTCGGATACACAAGAATGATTTTGCTGGCCTCAAGCAGCTTCGAGTGttgttggggcaaggctaagcagccatttgctatattcccctttagcctggct Alignment from Spaln_aa2Genome GGAACTCAACGGCAACAACATCACTCGGATCCACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGTT tatcaagcctcatgattggcaattaacccacaccaatctctctttggcagGGAACTCAACAGCAACAACATCACTCGGATACACAAGAATGATTTTGCTGGCCTCAAGCAGCTTCGAGTGTTgttggggcaaggctaagcagccatttgctatattcccctttagcctggct Alignment from Spaln_nt2Genome GGAACTCAACGGCAACAACATCACTCGGATCCACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGTT tatcaagcctcatgattggcaattaacccacaccaatctctctttggcagGGAACTCAACAGCAACAACATCACTCGGATACACAAGAATGATTTTGCTGGCCTCAAGCAGCTTCGAGTGTTgttggggcaaggctaagcagccatttgctatattcccctttagcctggct Alignment from Pairagon GGAACTCAACGGCAACAACATCACTCGGATCCACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGTT tatcaagcctcatgattggcaattaacccacaccaatctctctttggcagGGAACTCAACAGCAACAACATCACTCGGATACACAAGAATGATTTTGCTGGCCTCAAGCAGCTTCGAGTGTTgttggggcaaggctaagcagccatttgctatattcccctttagcctggct Alignment from Exonerate_protein2genome GGAACTCAACGGCAACAACATCACTCGGATCCACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGTT tatcaagcctcatgattggcaattaacccacaccaatctctctttggcagGGAACTCAACAGCAACAACATCACTCGGATACACAAGAATGATTTTGCTGGCCTCAAGCAGCTTCGAGTGTTgttggggcaaggctaagcagccatttgctatattcccctttagcctggct Alignment from Exonerate_coding2genome tatcaagcctcatgattggcaattaacccacaccaatctctctttggcagggaactcaacagcaacaacatcactcggatacacaagaatgattttgctggcctcaagcagcttcgagtgttgttggggcaaggctaagcagccatttgctatattcccctttagcctggct Alignment from GeneWise GGAACTCAACGGCAACAACATCACTCGGATCCACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGTT tatcaagcctcatgattggcaattaacccacaccaatctctctttggcagGGAACTCAACAGCAACAACATCACTCGGATACACAAGAATGATTTTGCTGGCCTCAAGCAGCTTCGAGTGTTgttggggcaaggctaagcagccatttgctatattcccctttagcctggct #### Slk_ID10247_3 --> 0 - 1 Original Alignment ATCCTCATTGAATTCTGTGCAGGGGGAGCAGTGGATGCTGTGATGCTTg gagttctcctttggagtgccaagatcttctggcctggtcactcttcacagATCCTCATTGAATTTTGTGCAGGGGGAGCAGTTGATGCTGTAAAGCTTagtcagtacctcaacttagttttatccccaccatccttactatgtagcttt Alignment from CESAR ATCCTCATTGAATTCTGTGCAGGGGGAGCAGTGGATGCTGTGATGCTTg gagttctcctttggagtgccaagatcttctggcctggtcactcttcacagATCCTCATTGAATTTTGTGCAGGGGGAGCAGTTGATGCTGTAAAGCTTagtcagtacctcaacttagttttatccccaccatccttactatgtagcttt Alignment from Spaln_aa2Genome ATCCTCATTGAATTCTGTGCAGGGGGAGCAGTGGATGCTGTGATGCTTG gagttctcctttggagtgccaagatcttctggcctggtcactcttcacagATCCTCATTGAATTTTGTGCAGGGGGAGCAGTTGATGCTGTAAAGCTTAgtcagtacctcaacttagttttatccccaccatccttactatgtagcttt Alignment from Spaln_nt2Genome ATCCTCATTGAATTCTGTGCAGGGGGAGCAGTGGATGCTGTGATGCTTG gagttctcctttggagtgccaagatcttctggcctggtcactcttcacagATCCTCATTGAATTTTGTGCAGGGGGAGCAGTTGATGCTGTAAAGCTTAgtcagtacctcaacttagttttatccccaccatccttactatgtagcttt Alignment from Pairagon ATCCTCATTGAATTCTGTGCAGGGGGAGCAGTGGATGCTGTGATGCTTGAACTTGAGAGACCATTAACTGAA gagttctcctttggagtgccaagatcttctggcctggtcactcttcacagATCCTCATTGAATTTTGTGCAGGGGGAGCAGTTGATGCTGTAAAGCTT-----------------------Agtcagtacctcaacttagttttatccccaccatccttactatgtagcttt Alignment from Exonerate_protein2genome ATCCTCATTGAATTCTGTGCAGGGGGAGCAGTGGATGCTGTGATGCTTG gagttctcctttggagtgccaagatcttctggcctggtcactcttcacagATCCTCATTGAATTTTGTGCAGGGGGAGCAGTTGATGCTGTAAAGCTTAgtcagtacctcaacttagttttatccccaccatccttactatgtagcttt Alignment from Exonerate_coding2genome ATCCTCATTGAATTCTGTGCAGGGGGAGCAGTGGATGCTGTGATGCTTG gagttctcctttggagtgccaagatcttctggcctggtcactcttcacagATCCTCATTGAATTTTGTGCAGGGGGAGCAGTTGATGCTGTAAAGCTTAgtcagtacctcaacttagttttatccccaccatccttactatgtagcttt Alignment from GeneWise ATCCTCATTGAATTCTGTGCAGGGGGAGCAGTGGATGCTGTGATGCTT- gagttctcctttggagtgccaagatcttctggcctggtcactcttcacagATCCTCATTGAATTTTGTGCAGGGGGAGCAGTTGATGCTGTAAAGCTTAgtcagtacctcaacttagttttatccccaccatccttactatgtagcttt #### Slk_ID10251_7 --> 1 - 0 Original Alignment gTCTTCAAATTTTAAGGACTTTCTAAGGAAATGCTTGGAAAAGAATGTGGATGCGCGGTGGACCACGTCTCAGCTGTTGCAG cccttgggctggatagctgtttttgtgcctcagggtcccttgtcttccaggTCTTCAAATTTTAAGGATTTCCTACGGAAATGCCTGGAAAAGAATGTGGATGCACAGTGGACCACATCTCAGCTGTTGCAGgtaacattgacaatagtctgagataattaagcgaaatgtttgatcctgta Alignment from CESAR gTCTTCAAATTTTAAGGACTTTCTAAGGAAATGCTTGGAAAAGAATGTGGATGCGCGGTGGACCACGTCTCAGCTGTTGCAG cccttgggctggatagctgtttttgtgcctcagggtcccttgtcttccaggTCTTCAAATTTTAAGGATTTCCTACGGAAATGCCTGGAAAAGAATGTGGATGCACAGTGGACCACATCTCAGCTGTTGCAGgtaacattgacaatagtctgagataattaagcgaaatgtttgatcctgta Alignment from Spaln_aa2Genome GTCTTCAAATTTTAAGGACTTTCTAAGGAAATGCTTGGAAAAGAATGTGGATGCGCGGTGGACCACGTCTCAGCTGTTGCAG cccttgggctggatagctgtttttgtgcctcagggtcccttgtcttccagGTCTTCAAATTTTAAGGATTTCCTACGGAAATGCCTGGAAAAGAATGTGGATGCACAGTGGACCACATCTCAGCTGTTGCAGgtaacattgacaatagtctgagataattaagcgaaatgtttgatcctgta Alignment from Spaln_nt2Genome GTCTTCAAATTTTAAGGACTTTCTAAGGAAATGCTTGGAAAAGAATGTGGATGCGCGGTGGACCACGTCTCAGCTGTTGCAG cccttgggctggatagctgtttttgtgcctcagggtcccttgtcttccagGTCTTCAAATTTTAAGGATTTCCTACGGAAATGCCTGGAAAAGAATGTGGATGCACAGTGGACCACATCTCAGCTGTTGCAGgtaacattgacaatagtctgagataattaagcgaaatgtttgatcctgta Alignment from Pairagon GTCTTCAAATTTTAAGGACTTTCTAAGGAAATGCTTGGAAAAGAATGTGGATGCGCGGTGGACCACGTCTCAGCTGTTGCAG cccttgggctggatagctgtttttgtgcctcagggtcccttgtcttccagGTCTTCAAATTTTAAGGATTTCCTACGGAAATGCCTGGAAAAGAATGTGGATGCACAGTGGACCACATCTCAGCTGTTGCAGgtaacattgacaatagtctgagataattaagcgaaatgtttgatcctgta Alignment from Exonerate_protein2genome GTCTTCAAATTTTAAGGACTTTCTAAGGAAATGCTTGGAAAAGAATGTGGATGCGCGGTGGACCACGTCTCAGCTGTTGCAG cccttgggctggatagctgtttttgtgcctcagggtcccttgtcttccagGTCTTCAAATTTTAAGGATTTCCTACGGAAATGCCTGGAAAAGAATGTGGATGCACAGTGGACCACATCTCAGCTGTTGCAGgtaacattgacaatagtctgagataattaagcgaaatgtttgatcctgta Alignment from Exonerate_coding2genome GTCTTCAAATTTTAAGGACTTTCTAAGGAAATGCTTGGAAAAGAATGTGGATGCGCGGTGGACCACGTCTCAGCTGTTGCAG cccttgggctggatagctgtttttgtgcctcagggtcccttgtcttccagGTCTTCAAATTTTAAGGATTTCCTACGGAAATGCCTGGAAAAGAATGTGGATGCACAGTGGACCACATCTCAGCTGTTGCAGgtaacattgacaatagtctgagataattaagcgaaatgtttgatcctgta Alignment from GeneWise GTCTTCAAATTTTAAGGACTTTCTAAGGAAATGCTTGGAAAAGAATGTGGATGCGCGGTGGACCACGTCTCAGCTGTTGCAG cccttgggctggatagctgtttttgtgcctcagggtcccttgtcttccagGTCTTCAAATTTTAAGGATTTCCTACGGAAATGCCTGGAAAAGAATGTGGATGCACAGTGGACCACATCTCAGCTGTTGCAGgtaacattgacaatagtctgagataattaagcgaaatgtttgatcctgta #### Slk_ID10263_15 --> 2 - 0 Original Alignment ctCGAGAAGCCGCAATTTGGGAGCTTGAAGAGCGACATTTACAAGAGAAGCACCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGCTAAAACGCCATGAGAAG atgagttatcagttaatataaagggaaatatttctttttgtctgttttagctCGTGAAGCTGCAATTTGGGAGCTTGAAGAGCGACATTTACAGGAAAAGCATCAGCTGCTTAAACAGCAGCTCAAAGATCAGTACTTCATCCAGAGGCATCAGCTGTTAAAACGCTATGAGAAGgcaagcgtcagggatttctgtccgcactttaaagctattctactaatgtg Alignment from CESAR ctCGAGAAGCCGCAATTTGGGAGCTTGAAGAGCGACATTTACAAGAGAAGCACCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGCTAAAACGCCATGAGAAG atgagttatcagttaatataaagggaaatatttctttttgtctgttttagctCGTGAAGCTGCAATTTGGGAGCTTGAAGAGCGACATTTACAGGAAAAGCATCAGCTGCTTAAACAGCAGCTCAAAGATCAGTACTTCATCCAGAGGCATCAGCTGTTAAAACGCTATGAGAAGgcaagcgtcagggatttctgtccgcactttaaagctattctactaatgtg Alignment from Spaln_aa2Genome CTCGAGAAGCCGCAATTTGGGAGCTTGAAGAGCGACATTTACAAGAGAAGCACCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGCTAAAACGCCATGAGAAG atgagttatcagttaatataaagggaaatatttctttttgtctgttttagCTCGTGAAGCTGCAATTTGGGAGCTTGAAGAGCGACATTTACAGGAAAAGCATCAGCTGCTTAAACAGCAGCTCAAAGATCAGTACTTCATCCAGAGGCATCAGCTGTTAAAACGCTATGAGAAGgcaagcgtcagggatttctgtccgcactttaaagctattctactaatgtg Alignment from Spaln_nt2Genome CTCGAGAAGCCGCAATTTGGGAGCTTGAAGAGCGACATTTACAAGAGAAGCACCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGCTAAAACGCCATGAGAAG atgagttatcagttaatataaagggaaatatttctttttgtctgttttagCTCGTGAAGCTGCAATTTGGGAGCTTGAAGAGCGACATTTACAGGAAAAGCATCAGCTGCTTAAACAGCAGCTCAAAGATCAGTACTTCATCCAGAGGCATCAGCTGTTAAAACGCTATGAGAAGgcaagcgtcagggatttctgtccgcactttaaagctattctactaatgtg Alignment from Pairagon CTCGAGAAGCCGCAATTTGGGAGCTTGAAGAGCGACATTTACAAGAGAAGCACCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGCTAAAACGCCATGAGAAG atgagttatcagttaatataaagggaaatatttctttttgtctgttttagCTCGTGAAGCTGCAATTTGGGAGCTTGAAGAGCGACATTTACAGGAAAAGCATCAGCTGCTTAAACAGCAGCTCAAAGATCAGTACTTCATCCAGAGGCATCAGCTGTTAAAACGCTATGAGAAGgcaagcgtcagggatttctgtccgcactttaaagctattctactaatgtg Alignment from Exonerate_protein2genome CTCGAGAAGCCGCAATTTGGGAGCTTGAAGAGCGACATTTACAAGAGAAGCACCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGCTAAAACGCCATGAGAAG atgagttatcagttaatataaagggaaatatttctttttgtctgttttagCTCGTGAAGCTGCAATTTGGGAGCTTGAAGAGCGACATTTACAGGAAAAGCATCAGCTGCTTAAACAGCAGCTCAAAGATCAGTACTTCATCCAGAGGCATCAGCTGTTAAAACGCTATGAGAAGgcaagcgtcagggatttctgtccgcactttaaagctattctactaatgtg Alignment from Exonerate_coding2genome CTCGAGAAGCCGCAATTTGGGAGCTTGAAGAGCGACATTTACAAGAGAAGCACCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGCTAAAACGCCATGAGAAG atgagttatcagttaatataaagggaaatatttctttttgtctgttttagCTCGTGAAGCTGCAATTTGGGAGCTTGAAGAGCGACATTTACAGGAAAAGCATCAGCTGCTTAAACAGCAGCTCAAAGATCAGTACTTCATCCAGAGGCATCAGCTGTTAAAACGCTATGAGAAGgcaagcgtcagggatttctgtccgcactttaaagctattctactaatgtg Alignment from GeneWise CTCGAGAAGCCGCAATTTGGGAGCTTGAAGAGCGACATTTACAAGAGAAGCACCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGCTAAAACGCCATGAGAAG------ atgagttatcagttaatataaagggaaatatttctttttgtctgttttagCTCGTGAAGCTGCAATTTGGGAGCTTGAAGAGCGACATTTACAGGAAAAGCATCAGCTGCTTAAACAGCAGCTCAAAGATCAGTACTTCATCCAGAGGCATCAGCTGTTAAAACGCTATGAGAAGGCAAGCgtcagggatttctgtccgcactttaaagctattctactaatgtg #### Slk_ID10265_17 --> 0 - 0 Original Alignment TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG cactgtagagggaagatatgtttctgtatcttttatgtgtttccttgcagTTTGCTGCACAAGACAAAAAGCGAAAAAAAAATGAAAGGATGTCTCAACATCAAAAGCATGAAAGCCATATGCGGGATCTTCAGCTGCAATGTGAAGCTAATGTGCAGGAATTACATCAGTTGCCAgtaagatttctaaaactggagtgacaggaagtgcatttgtattgtttaga Alignment from CESAR TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG cactgtagagggaagatatgtttctgtatcttttatgtgtttccttgcagTTTGCTGCACAAGACAAAAAGCGAAAAAAAAATGAAAGGATGTCTCAACATCAAAAGCATGAAAGCCATATGCGGGATCTTCAGCTGCAATGTGAAGCTAATGTGCAGGAATTACATCAGTTGCCAgtaagatttctaaaactggagtgacaggaagtgcatttgtattgtttaga Alignment from Spaln_aa2Genome TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG cactgtagagggaagatatgtttctgtatcttttatgtgtttccttgcagTTTGCTGCACAAGACAAAAAGCGAAAAAAAAATGAAAGGATGTCTCAACATCAAAAGCATGAAAGCCATATGCGGGATCTTCAGCTGCAATGTGAAGCTAATGTGCAGGAATTACATCAGTTGCCAgtaagatttctaaaactggagtgacaggaagtgcatttgtattgtttaga Alignment from Spaln_nt2Genome TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG cactgtagagggaagatatgtttctgtatcttttatgtgtttccttgcagTTTGCTGCACAAGACAAAAAGCGAAAAAAAAATGAAAGGATGTCTCAACATCAAAAGCATGAAAGCCATATGCGGGATCTTCAGCTGCAATGTGAAGCTAATGTGCAGGAATTACATCAGTTGCCAgtaagatttctaaaactggagtgacaggaagtgcatttgtattgtttaga Alignment from Pairagon TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG cactgtagagggaagatatgtttctgtatcttttatgtgtttccttgcagTTTGCTGCACAAGACAAAAAGCGAAAAAAAAATGAAAGGATGTCTCAACATCAAAAGCATGAAAGCCATATGCGGGATCTTCAGCTGCAATGTGAAGCTAATGTGCAGGAATTACATCAGTTGCCAgtaagatttctaaaactggagtgacaggaagtgcatttgtattgtttaga Alignment from Exonerate_protein2genome TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG cactgtagagggaagatatgtttctgtatcttttatgtgtttccttgcagTTTGCTGCACAAGACAAAAAGCGAAAAAAAAATGAAAGGATGTCTCAACATCAAAAGCATGAAAGCCATATGCGGGATCTTCAGCTGCAATGTGAAGCTAATGTGCAGGAATTACATCAGTTGCCAgtaagatttctaaaactggagtgacaggaagtgcatttgtattgtttaga Alignment from Exonerate_coding2genome TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG cactgtagagggaagatatgtttctgtatcttttatgtgtttccttgcagTTTGCTGCACAAGACAAAAAGCGAAAAAAAAATGAAAGGATGTCTCAACATCAAAAGCATGAAAGCCATATGCGGGATCTTCAGCTGCAATGTGAAGCTAATGTGCAGGAATTACATCAGTTGCCAgtaagatttctaaaactggagtgacaggaagtgcatttgtattgtttaga Alignment from GeneWise TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG cactgtagagggaagatatgtttctgtatcttttatgtgtttccttgcagTTTGCTGCACAAGACAAAAAGCGAAAAAAAAATGAAAGGATGTCTCAACATCAAAAGCATGAAAGCCATATGCGGGATCTTCAGCTGCAATGTGAAGCTAATGTGCAGGAATTACATCAGTTGCCAgtaagatttctaaaactggagtgacaggaagtgcatttgtattgtttaga #### Smarca2_ID5717_3 --> 2 - 1 Original Alignment gtTATATGTCACCACATCCGTCTCCTCTGGGAGCCCCGGAGCACGTCTCTAGCCCTATA---TCTGGAGGAGGCCCAACCCCACCCCAGATGCCACCGAGCCAGCCAGGGGCACTCATCCCAGGAGATCCGCAGGCCATGAACCAGCCTAACAGAGGTCCCTCGCCTTTCAGTCCT---GTGCAGCTGCATCAGCTTCGAGCTCAGATTTTAGCTTACAAAATGTTGGCCAGGGGCCAGCCTCTCCCTGAAACTCTGCAGCTGGCAGTCCAGGGAAAAAGGACCTTGCCTGGCATGCAGCAGCAGCAGCAGCAACAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAG---CAGCAACAACAGCAGCCCCAGCAGCCTCAGCAGCAGGCTCAGGCACAGCCCCAGCAGCAGCAGCAACAGCAGCAGCAGCCAGCTCTTGTTAGCTATAATCGACCATCTg ttggagcctatgtcctttcaccgaagcctgagtcgtattctgcttttcagggTACCCAGCACCCCATCCTTCTGCTTTAGGGGCACCAGAGCATGTC------TCTATTATATCTGGAGGAGGCCCAAGTCCTCCCCAAATGCCGCCAAGTCAACCAGGC---CTCCTCCCAGGAGATCCTCAGGCCATGAATCAGCCTAACAGAGGT---CCACCCTTTAGCCCTCCTGTGCAATTGCATCAGCTTCGTGCCCAAATTCTTGCTTATGAAATGTTGGCCAGGGGCAGGTCACTGCCTGAGAGTTTACAGCTGGTGGCTCAGGGAAGGCGAACCTTGCCTGGCATGCATCAGCAACAGCAGCAGAAACAGCAACAGCAGCAGCAGCAGCAGCATCAACAACAACATCAACAGCAACAACAACAACAACCTCACCAGCCCCAGCAGCAGGCCCAAGCACAGCCTCAACAGCAGCAGCAACGGCAGCAACAGCCAGTTTTTGTAAGCTACAACCGGCCAGCTggtaagtatcatttctaaatgactatgtccacccaatctctattgcataaa Alignment from CESAR gtTATATGTCACCACATCCGTCTCCTCTGGGAGCCCCGGAGCACGTCTCTAGCCCTATATCTGGAGGAGGCCCAACCCCACCCCAGATGCCACCGAGCCAGCCAGGGGCACTCATCCCAGGAGATCCGCAGGCCATGAACCAGCCTAACAGAGGTCCCTCGCCTTTCAGT---CCTGTGCAGCTGCATCAGCTTCGAGCTCAGATTTTAGCTTACAAAATGTTGGCCAGGGGCCAGCCTCTCCCTGAAACTCTGCAGCTGGCAGTCCAGGGAAAAAGGACCTTGCCTGGCATGCAGCAGCAGCAGCAGCAACAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAG---CAACAGCAGCAACAACAGCAGCCCCAGCAGCCTCAGCAGCAGGCTCAGGCACAGCCCCAGCAGCAGCAGCAACAGCAGCAGCAGCCAGCTCTTGTTAGCTATAATCGACCATCTg ttggagcctatgtcctttcaccgaagcctgagtcgtattctgcttttcagggTACCCAGCACCCCATCCTTCTGCTTTAGGGGCACCAGAGCATGTCTCTATT---ATATCTGGAGGAGGCCCAAGTCCTCCCCAAATGCCGCCAAGTCAACCAGGC---CTCCTCCCAGGAGATCCTCAGGCCATGAATCAGCCTAACAGAGGTCCA---CCCTTTAGCCCTCCTGTGCAATTGCATCAGCTTCGTGCCCAAATTCTTGCTTATGAAATGTTGGCCAGGGGCAGGTCACTGCCTGAGAGTTTACAGCTGGTGGCTCAGGGAAGGCGAACCTTGCCTGGCATGCATCAGCAACAGCAGCAGAAACAGCAACAGCAGCAGCAGCAGCAGCATCAACAACAACATCAACAGCAACAACAACAACAACCTCACCAGCCCCAGCAGCAGGCCCAAGCACAGCCTCAACAGCAGCAGCAACGGCAGCAACAGCCAGTTTTTGTAAGCTACAACCGGCCAGCTggtaagtatcatttctaaatgactatgtccacccaatctctattgcataaa Alignment from Spaln_aa2Genome GTTATATGTCACCACATCCGTCTCCTCTGGGAGCCCCGGAGCACGTCTCTAGCCCTATATCTGGAGGAGGCCCAACCCCACCCCAGATGCCACCGAGCCAGCCAGGGGCACTCATCCCAGGAGATCCGCAGGCCATGAACCAGCCTAACAGAGGTCCCTCGCCTTTCAGTCCTGTGCAGCTGCATCAGCTTCGAGCTCAGATTTTAGCTTACAAAATGTTGGCCAGGGGCCAGCCTCTCCCTGAAACTCTGCAGCTGGCAGTCCAGGGAAAAAGGACCTTGCCTGGCATGCAGCAGCAGCAGCAGCAACAACAACAACAGCAGCAG---CAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAACAACAGCAGCCCCAGCAGCCTCAGCAGCAGGCTCAGGCACAGCCCCAGCAGCAGCAGCAACAGCAGCAGCAGCCAGCTCTTGTTAGCTATAATCGACCATCTG ttggagcctatgtcctttcaccgaagcctgagtcgtattctgcttttcagGGTACCCAGCACCCCATCCTTCTGCTTTAGGGGCACCAGAGCATGTCTCTATT---ATATCTGGAGGAGGCCCAAGTCCTCCCCAAATGCCGCCAAGTCAACCAGGCCTCCTC---CCAGGAGATCCTCAGGCCATGAATCAGCCTAACAGAGGTCCACCCTTTAGCCCTCCTGTGCAATTGCATCAGCTTCGTGCCCAAATTCTTGCTTATGAAATGTTGGCCAGGGGCAGGTCACTGCCTGAGAGTTTACAGCTGGTGGCTCAGGGAAGGCGAACCTTGCCTGGCATGCATCAGCAACAGCAGCAGAAACAGCAACAGCAGCAGCAGCAGCAGCATCAACAACAACATCAACAGCAACAACAACAACAACCTCACCAGCCCCAGCAGCAGGCCCAAGCACAGCCTCAACAGCAGCAGCAACGGCAGCAACAGCCAGTTTTTGTAAGCTACAACCGGCCAGCTGgtaagtatcatttctaaatgactatgtccacccaatctctattgcataaa Alignment from Spaln_nt2Genome GTTATATGTCACCACATCCGTCTCCTCTGGGAGCCCCGGAGCACGTCTCTAGCCCTATATCTGGAGGAGGCCCAACCCCACCCCAGATGCCACCGAGCCAGCCAGGGGCACTCATCCCAGGAGATCCGCAGGCCATGAACCAGCCTAACAGAGGTCCCTCGCCTTTCAGTCCTGTGCAGCTGCATCAGCTTCGAGCTCAGATTTTAGCTTACAAAATGTTGGCCAGGGGCCAGCCTCTCCCTGAAACTCTGCAGCTGGCAGTCCAGGGAAAAAGGACCTTGCCTGGCATGCAGCAGCAGCAGCAGCAACAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAACAACAGCAGC---------------CCCAGCAGCCTCAGCAGCAGGCTCAGGCACAGCCCCAGCAGCAGCAGCAACAGCAGCAGCAGCCAGCTCTTGTTAGCTATAATCGACCATCTG ttggagcctatgtcctttcaccgaagcctgagtcgtattctgcttttcagGGTACCCAGCACCCCATCCTTCTGCTTTAGGGGCACCAGAGCATGTCTCTA---TTATATCTGGAGGAGGCCCAAGTCCTCCCCAAATGCCGCCAAGTCAACCAGG---CCTCCTCCCAGGAGATCCTCAGGCCATGAATCAGCCTAACAGAGGTCCACCCTTTAGCCCTCCTGTGCAATTGCATCAGCTTCGTGCCCAAATTCTTGCTTATGAAATGTTGGCCAGGGGCAGGTCACTGCCTGAGAGTTTACAGCTGGTGGCTCAGGGAAGGCGAACCTTGCCTGGCATGCATCAGCAACAGCAG------------CAGAAACAGCAACAGCAGCAGCAGCAGCAGCATCAACAACAACATCAACAGCAACAACAACAACAACCTCACCAGCCCCAGCAGCAGGCCCAAGCACAGCCTCAACAGCAGCAGCAACGGCAGCAACAGCCAGTTTTTGTAAGCTACAACCGGCCAGCTGgtaagtatcatttctaaatgactatgtccacccaatctctattgcataaa Alignment from Pairagon CACCACATCCGTCTCCTCTGGGAGCCCCGGAGCACGTCTCTAGCCCTATATCTGGAGGAGGCCCAACCCCACCCCAGATGCCACCGAGCCAGCCAGGGGCACTCATCCCAGGAGATCCGCAGGCCATGAACCAGCCTAACAGAGGTCCCTCGCCTTTCAG---TCCTGTGCAGCTGCATCAGCTTCGAGCTCAGATTTTAGCTTACAAAATGTTGGCCAGGGGCCAGCCTCTCCCTGAAACTCTGCAGCTGGCAGTCCAGGGAAAAAGGACCTTGCCTGGCATG---CAGCAGCAGCAGCAGCAACAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAACAACAGCAGCCCCAGCAGCCTCAGCAGCAGGCTCAGGCACAGCCCCAGCAGCAGCAGCAACAGCAGCAGCAGCCAGCTCTTGTTAGCTATAATCGACCATCTG ttggagcctatgtcctttcaccgaagcctgagtcgtattctgcttttcagggtacccagCACCCCATCCTTCTGCTTTAGGGGCACCAGAGCATGTCTCTA---TTATATCTGGAGGAGGCCCAAGTCCTCCCCAAATGCCGCCAAGTCAACCAGG---CCTCCTCCCAGGAGATCCTCAGGCCATGAATCAGCCTAACAGAGGTC---CACCCTTTAGCCCTCCTGTGCAATTGCATCAGCTTCGTGCCCAAATTCTTGCTTATGAAATGTTGGCCAGGGGCAGGTCACTGCCTGAGAGTTTACAGCTGGTGGCTCAGGGAAGGCGAACCTTGCCTGGCATGCATCAGCAACAGCAGCAGAAACAGCAACAGCAGCAGCAGCAGCAGCATCAACAACAACATCAACAGCAACAACAACAACAACCTCACCAGCCCCAGCAGCAGGCCCAAGCACAGCCTCAACAGCAGCAGCAACGGCAGCAACAGCCAGTTTTTGTAAGCTACAACCGGCCAGCTGgtaagtatcatttctaaatgactatgtccacccaatctctattgcataaa Alignment from Exonerate_protein2genome GTTATATGTCACCACATCCGTCTCCTCTGGGAGCCCCGGAGCACGTCTCTAGCCCTATATCTGGAGGAGGCCCAACCCCACCCCAGATGCCACCGAGCCAGCCAGGGGCACTCATCCCAGGAGATCCGCAGGCCATGAACCAGCCTAACAGAGGTCCCTCGCCTTTCAGTCCTGTGCAGCTGCATCAGCTTCGAGCTCAGATTTTAGCTTACAAAATGTTGGCCAGGGGCCAGCCTCTCCCTGAAACTCTGCAGCTGGCAGTCCAGGGAAAAAGGACCTTGCCTGGCATG---CAGCAGCAGCAGCAGCAACAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAACAACAGCAGCCCCAGCAGCCTCAGCAGCAGGCTCAGGCACAGCCCCAGCAGCAGCAGCAACAGCAGCAGCAGCCAGCTCTTGTTAGCTATAATCGACCATCTG ttggagcctatgtcctttcaccgaagcctgagtcgtattctgcttttcagGGTACCCAGCACCCCATCCTTCTGCTTTAGGGGCACCAGAGCATGTCTCTATT---ATATCTGGAGGAGGCCCAAGTCCTCCCCAAATGCCGCCAAGTCAACCAGGC---CTCCTCCCAGGAGATCCTCAGGCCATGAATCAGCCTAACAGAGGTCCACCCTTTAGCCCTCCTGTGCAATTGCATCAGCTTCGTGCCCAAATTCTTGCTTATGAAATGTTGGCCAGGGGCAGGTCACTGCCTGAGAGTTTACAGCTGGTGGCTCAGGGAAGGCGAACCTTGCCTGGCATGCATCAGCAACAGCAGCAGAAACAGCAACAGCAGCAGCAGCAGCAGCATCAACAACAACATCAACAGCAACAACAACAACAACCTCACCAGCCCCAGCAGCAGGCCCAAGCACAGCCTCAACAGCAGCAGCAACGGCAGCAACAGCCAGTTTTTGTAAGCTACAACCGGCCAGCTGgtaagtatcatttctaaatgactatgtccacccaatctctattgcataaa Alignment from Exonerate_coding2genome GTTATATGTCACCACATCCGTCTCCTCTGGGAGCCCCGGAGCACGTCTCTAGCCCTATATCTGGAGGAGGCCCAACCCCACCCCAGATGCCACCGAGCCAGCCAGGGGCACTCATCCCAGGAGATCCGCAGGCCATGAACCAGCCTAACAGAGGTCCCTCGCCTTTCAGTCCTGTGCAGCTGCATCAGCTTCGAGCTCAGATTTTAGCTTACAAAATGTTGGCCAGGGGCCAGCCTCTCCCTGAAACTCTGCAGCTGGCAGTCCAGGGAAAAAGGACCTTGCCTGGCATG---CAGCAGCAGCAGCAGCAACAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAACAACAGCAGCCCCAGCAGCCTCAGCAGCAGGCTCAGGCACAGCCCCAGCAGCAGCAGCAACAGCAGCAGCAGCCAGCTCTTGTTAGCTATAATCGACCATCTG ttggagcctatgtcctttcaccgaagcctgagtcgtattctgcttttcagGGTACCCAGCACCCCATCCTTCTGCTTTAGGGGCACCAGAGCATGTCTCTATT---ATATCTGGAGGAGGCCCAAGTCCTCCCCAAATGCCGCCAAGTCAACCAGGC---CTCCTCCCAGGAGATCCTCAGGCCATGAATCAGCCTAACAGAGGTCCACCCTTTAGCCCTCCTGTGCAATTGCATCAGCTTCGTGCCCAAATTCTTGCTTATGAAATGTTGGCCAGGGGCAGGTCACTGCCTGAGAGTTTACAGCTGGTGGCTCAGGGAAGGCGAACCTTGCCTGGCATGCATCAGCAACAGCAGCAGAAACAGCAACAGCAGCAGCAGCAGCAGCATCAACAACAACATCAACAGCAACAACAACAACAACCTCACCAGCCCCAGCAGCAGGCCCAAGCACAGCCTCAACAGCAGCAGCAACGGCAGCAACAGCCAGTTTTTGTAAGCTACAACCGGCCAGCTGgtaagtatcatttctaaatgactatgtccacccaatctctattgcataaa Alignment from GeneWise GTTATATGTCACCACATCCGTCTCCTCTGGGAGCCCCGGAGCACGTCTCTAGCCCTATATCTGGAGGAGGCCCAACCCCACCCCAGATGCCACCGAGCCAGCCAGGGGCACTCATCCCAGGAGATCCGCAGGCCATGAACCAGCCTAACAGAGGTCCCTCGCCTTTCAGT---CCTGTGCAGCTGCATCAGCTTCGAGCTCAGATTTTAGCTTACAAAATGTTGGCCAGGGGCCAGCCTCTCCCTGAAACTCTGCAGCTGGCAGTCCAGGGAAAAAGGACCTTGCCTGGCATG---CAGCAGCAGCAGCAGCAACAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAACAACAGCAGCCCCAGCAGCCTCAGCAGCAGGCTCAGGCACAGCCCCAGCAGCAGCAGCAACAGCAGCAGCAGCCAGCTCTTGTTAGCTATAATCGACCATCTG ttggagcctatgtcctttcaccgaagcctgagtcgtattctgcttttcagGGTACCCAGCACCCCATCCTTCTGCTTTAGGGGCACCAGAGCATGTCTCTATT---ATATCTGGAGGAGGCCCAAGTCCTCCCCAAATGCCGCCAAGTCAACCAGGC---CTCCTCCCAGGAGATCCTCAGGCCATGAATCAGCCTAACAGAGGTCCA---CCCTTTAGCCCTCCTGTGCAATTGCATCAGCTTCGTGCCCAAATTCTTGCTTATGAAATGTTGGCCAGGGGCAGGTCACTGCCTGAGAGTTTACAGCTGGTGGCTCAGGGAAGGCGAACCTTGCCTGGCATGCATCAGCAACAGCAGCAGAAACAGCAACAGCAGCAGCAGCAGCAGCATCAACAACAACATCAACAGCAACAACAACAACAACCTCACCAGCCCCAGCAGCAGGCCCAAGCACAGCCTCAACAGCAGCAGCAACGGCAGCAACAGCCAGTTTTTGTAAGCTACAACCGGCCAGCTGgtaagtatcatttctaaatgactatgtccacccaatctctattgcataaa #### Smarca2_ID5722_7 --> 0 - 0 Original Alignment GAATACCTGAACAGTATTTTGCAACATGCAAAAGATTTTAAGGAATATCACCGGTCTGTGGCCGGGAAGATCCAGAAGCTCTCCAAAGCAGTGGCGACTTGGCATGCTAACACAGAAAGGGAGCAGAAGAAGGAGACGGAGCGGATCGAGAAGGAGAGAATGCGGAGGCTGATG aacagtattttacaacatgcacaggattacctgtccacacctgtccccagGAATACCTCAACAGTATTTTGCAACATGCACAGGATTTTAAAGAATATCATCGATCTGTGGCTGGCAAGATCCAGAAGCTCTCCAAAGCAGTGGCCACTTGGCATGCTAACACAGAAAGAGAGCAGAGGAAGGAGACAGAGCGAATAGAGAAGGAGAGAATGCAGAGGCTAATGgtaagacagatccagatgcatatatattggatgtgttcacacactgctgc Alignment from CESAR GAATACCTGAACAGTATTTTGCAACATGCAAAAGATTTTAAGGAATATCACCGGTCTGTGGCCGGGAAGATCCAGAAGCTCTCCAAAGCAGTGGCGACTTGGCATGCTAACACAGAAAGGGAGCAGAAGAAGGAGACGGAGCGGATCGAGAAGGAGAGAATGCGGAGGCTGATG aacagtattttacaacatgcacaggattacctgtccacacctgtccccagGAATACCTCAACAGTATTTTGCAACATGCACAGGATTTTAAAGAATATCATCGATCTGTGGCTGGCAAGATCCAGAAGCTCTCCAAAGCAGTGGCCACTTGGCATGCTAACACAGAAAGAGAGCAGAGGAAGGAGACAGAGCGAATAGAGAAGGAGAGAATGCAGAGGCTAATGgtaagacagatccagatgcatatatattggatgtgttcacacactgctgc Alignment from Spaln_aa2Genome GAATACCTGAACAGTATTTTGCAACATGCAAAAGATTTTAAGGAATATCACCGGTCTGTGGCCGGGAAGATCCAGAAGCTCTCCAAAGCAGTGGCGACTTGGCATGCTAACACAGAAAGGGAGCAGAAGAAGGAGACGGAGCGGATCGAGAAGGAGAGAATGCGGAGGCTGATG aacagtattttacaacatgcacaggattacctgtccacacctgtccccagGAATACCTCAACAGTATTTTGCAACATGCACAGGATTTTAAAGAATATCATCGATCTGTGGCTGGCAAGATCCAGAAGCTCTCCAAAGCAGTGGCCACTTGGCATGCTAACACAGAAAGAGAGCAGAGGAAGGAGACAGAGCGAATAGAGAAGGAGAGAATGCAGAGGCTAATGgtaagacagatccagatgcatatatattggatgtgttcacacactgctgc Alignment from Spaln_nt2Genome GAATACCTGAACAGTATTTTGCAACATGCAAAAGATTTTAAGGAATATCACCGGTCTGTGGCCGGGAAGATCCAGAAGCTCTCCAAAGCAGTGGCGACTTGGCATGCTAACACAGAAAGGGAGCAGAAGAAGGAGACGGAGCGGATCGAGAAGGAGAGAATGCGGAGGCTGATG aacagtattttacaacatgcacaggattacctgtccacacctgtccccagGAATACCTCAACAGTATTTTGCAACATGCACAGGATTTTAAAGAATATCATCGATCTGTGGCTGGCAAGATCCAGAAGCTCTCCAAAGCAGTGGCCACTTGGCATGCTAACACAGAAAGAGAGCAGAGGAAGGAGACAGAGCGAATAGAGAAGGAGAGAATGCAGAGGCTAATGgtaagacagatccagatgcatatatattggatgtgttcacacactgctgc Alignment from Pairagon GAATACCTGAACAGTATTTTGCAACATGCAAAAGATTTTAAGGAATATCACCGGTCTGTGGCCGGGAAGATCCAGAAGCTCTCCAAAGCAGTGGCGACTTGGCATGCTAACACAGAAAGGGAGCAGAAGAAGGAGACGGAGCGGATCGAGAAGGAGAGAATGCGGAGGCTGATG aacagtattttacaacatgcacaggattacctgtccacacctgtccccagGAATACCTCAACAGTATTTTGCAACATGCACAGGATTTTAAAGAATATCATCGATCTGTGGCTGGCAAGATCCAGAAGCTCTCCAAAGCAGTGGCCACTTGGCATGCTAACACAGAAAGAGAGCAGAGGAAGGAGACAGAGCGAATAGAGAAGGAGAGAATGCAGAGGCTAATGgtaagacagatccagatgcatatatattggatgtgttcacacactgctgc Alignment from Exonerate_protein2genome GAATACCTGAACAGTATTTTGCAACATGCAAAAGATTTTAAGGAATATCACCGGTCTGTGGCCGGGAAGATCCAGAAGCTCTCCAAAGCAGTGGCGACTTGGCATGCTAACACAGAAAGGGAGCAGAAGAAGGAGACGGAGCGGATCGAGAAGGAGAGAATGCGGAGGCTGATG aacagtattttacaacatgcacaggattacctgtccacacctgtccccagGAATACCTCAACAGTATTTTGCAACATGCACAGGATTTTAAAGAATATCATCGATCTGTGGCTGGCAAGATCCAGAAGCTCTCCAAAGCAGTGGCCACTTGGCATGCTAACACAGAAAGAGAGCAGAGGAAGGAGACAGAGCGAATAGAGAAGGAGAGAATGCAGAGGCTAATGgtaagacagatccagatgcatatatattggatgtgttcacacactgctgc Alignment from Exonerate_coding2genome GAATACCTGAACAGTATTTTGCAACATGCAAAAGATTTTAAGGAATATCACCGGTCTGTGGCCGGGAAGATCCAGAAGCTCTCCAAAGCAGTGGCGACTTGGCATGCTAACACAGAAAGGGAGCAGAAGAAGGAGACGGAGCGGATCGAGAAGGAGAGAATGCGGAGGCTGATG aacagtattttacaacatgcacaggattacctgtccacacctgtccccagGAATACCTCAACAGTATTTTGCAACATGCACAGGATTTTAAAGAATATCATCGATCTGTGGCTGGCAAGATCCAGAAGCTCTCCAAAGCAGTGGCCACTTGGCATGCTAACACAGAAAGAGAGCAGAGGAAGGAGACAGAGCGAATAGAGAAGGAGAGAATGCAGAGGCTAATGgtaagacagatccagatgcatatatattggatgtgttcacacactgctgc Alignment from GeneWise GAATACCTGAACAGTATTTTGCAACATGCAAAAGATTTTAAGGAATATCACCGGTCTGTGGCCGGGAAGATCCAGAAGCTCTCCAAAGCAGTGGCGACTTGGCATGCTAACACAGAAAGGGAGCAGAAGAAGGAGACGGAGCGGATCGAGAAGGAGAGAATGCGGAGGCTGATG aacagtattttacaacatgcacaggattacctgtccacacctgtccccagGAATACCTCAACAGTATTTTGCAACATGCACAGGATTTTAAAGAATATCATCGATCTGTGGCTGGCAAGATCCAGAAGCTCTCCAAAGCAGTGGCCACTTGGCATGCTAACACAGAAAGAGAGCAGAGGAAGGAGACAGAGCGAATAGAGAAGGAGAGAATGCAGAGGCTAATGgtaagacagatccagatgcatatatattggatgtgttcacacactgctgc #### Smarca2_ID5728_10 --> 0 - 2 Original Alignment CCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAGATGAATCCTgg gtgcatggcccctcctttgttatcactgagttttcttagcttgttttcagCCCATAGCCAAAAGCAGCCAGACGAGTGACCTACCTGTCAAAGTGACACACACAGGGAATGGAAGAGTTCTCTTTGGACCTGAAGTACCCAAAGCCAGCAAGCTGGACACTTGGGTGGAAATGAATCCAgggtgcggcgattttttgccgtactagtcacaggttaggccagagtaagtgg Alignment from CESAR CCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAGATGAATCCTgg gtgcatggcccctcctttgttatcactgagttttcttagcttgttttcagCCCATAGCCAAAAGCAGCCAGACGAGTGACCTACCTGTCAAAGTGACACACACAGGGAATGGAAGAGTTCTCTTTGGACCTGAAGTACCCAAAGCCAGCAAGCTGGACACTTGGGTGGAAATGAATCCAgggtgcggcgattttttgccgtactagtcacaggttaggccagagtaagtgg Alignment from Spaln_aa2Genome CCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAGATGAATCCTGG gtgcatggcccctcctttgttatcactgagttttcttagcttgttttcagCCCATAGCCAAAAGCAGCCAGACGAGTGACCTACCTGTCAAAGTGACACACACAGGGAATGGAAGAGTTCTCTTTGGACCTGAAGTACCCAAAGCCAGCAAGCTGGACACTTGGGTGGAAATGAATCCAGGgtgcggcgattttttgccgtactagtcacaggttaggccagagtaagtgg Alignment from Spaln_nt2Genome CCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAGATGAATCCTGG gtgcatggcccctcctttgttatcactgagttttcttagcttgttttcagCCCATAGCCAAAAGCAGCCAGACGAGTGACCTACCTGTCAAAGTGACACACACAGGGAATGGAAGAGTTCTCTTTGGACCTGAAGTACCCAAAGCCAGCAAGCTGGACACTTGGGTGGAAATGAATCCAGGgtgcggcgattttttgccgtactagtcacaggttaggccagagtaagtgg Alignment from Pairagon CCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAGATGAATCCTGG gtgcatggcccctcctttgttatcactgagttttcttagcttgttttcagCCCATAGCCAAAAGCAGCCAGACGAGTGACCTACCTGTCAAAGTGACACACACAGGGAATGGAAGAGTTCTCTTTGGACCTGAAGTACCCAAAGCCAGCAAGCTGGACACTTGGGTGGAAATGAATCCAGGgtgcggcgattttttgccgtactagtcacaggttaggccagagtaagtgg Alignment from Exonerate_protein2genome CCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAGATGAATCCTGG gtgcatggcccctcctttgttatcactgagttttcttagcttgttttcagCCCATAGCCAAAAGCAGCCAGACGAGTGACCTACCTGTCAAAGTGACACACACAGGGAATGGAAGAGTTCTCTTTGGACCTGAAGTACCCAAAGCCAGCAAGCTGGACACTTGGGTGGAAATGAATCCAGGgtgcggcgattttttgccgtactagtcacaggttaggccagagtaagtgg Alignment from Exonerate_coding2genome CCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAGATGAATCCTGG gtgcatggcccctcctttgttatcactgagttttcttagcttgttttcagCCCATAGCCAAAAGCAGCCAGACGAGTGACCTACCTGTCAAAGTGACACACACAGGGAATGGAAGAGTTCTCTTTGGACCTGAAGTACCCAAAGCCAGCAAGCTGGACACTTGGGTGGAAATGAATCCAGGgtgcggcgattttttgccgtactagtcacaggttaggccagagtaagtgg Alignment from GeneWise CCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAGATGAATCCTGG gtgcatggcccctcctttgttatcactgagttttcttagcttgttttcagCCCATAGCCAAAAGCAGCCAGACGAGTGACCTACCTGTCAAAGTGACACACACAGGGAATGGAAGAGTTCTCTTTGGACCTGAAGTACCCAAAGCCAGCAAGCTGGACACTTGGGTGGAAATGAATCCAGGgtgcggcgattttttgccgtactagtcacaggttaggccagagtaagtgg #### Smarca2_ID5730_12 --> 0 - 2 Original Alignment GATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTga agaacacatgcccaatatcacaaaggtggttttttttgtttgtttttcagGATGAAGAAGAAAAGTCCAGTAGGCAGGAAACCGAGGAAAAGATATTACTTGATCCCAATAGTGAAGAAGTTTCTGAAAAGGATGCCAAGCAGATTATTgagtgagaaggccttccatggttttacttagcaagtgtaatttaagatgtca Alignment from CESAR GATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTga agaacacatgcccaatatcacaaaggtggttttttttgtttgtttttcagGATGAAGAAGAAAAGTCCAGTAGGCAGGAAACCGAGGAAAAGATATTACTTGATCCCAATAGTGAAGAAGTTTCTGAAAAGGATGCCAAGCAGATTATTgagtgagaaggccttccatggttttacttagcaagtgtaatttaagatgtca Alignment from Spaln_aa2Genome GATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTGA agaacacatgcccaatatcacaaaggtggttttttttgtttgtttttcagGATGAAGAAGAAAAGTCCAGTAGGCAGGAAACCGAGGAAAAGATATTACTTGATCCCAATAGTGAAGAAGTTTCTGAAAAGGATGCCAAGCAGATTATTGAgtgagaaggccttccatggttttacttagcaagtgtaatttaagatgtca Alignment from Spaln_nt2Genome GATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTGA agaacacatgcccaatatcacaaaggtggttttttttgtttgtttttcagGATGAAGAAGAAAAGTCCAGTAGGCAGGAAACCGAGGAAAAGATATTACTTGATCCCAATAGTGAAGAAGTTTCTGAAAAGGATGCCAAGCAGATTATTGAgtgagaaggccttccatggttttacttagcaagtgtaatttaagatgtca Alignment from Pairagon GATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTGA agaacacatgcccaatatcacaaaggtggttttttttgtttgtttttcagGATGAAGAAGAAAAGTCCAGTAGGCAGGAAACCGAGGAAAAGATATTACTTGATCCCAATAGTGAAGAAGTTTCTGAAAAGGATGCCAAGCAGATTATTGAgtgagaaggccttccatggttttacttagcaagtgtaatttaagatgtca Alignment from Exonerate_protein2genome GATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTGA agaacacatgcccaatatcacaaaggtggttttttttgtttgtttttcagGATGAAGAAGAAAAGTCCAGTAGGCAGGAAACCGAGGAAAAGATATTACTTGATCCCAATAGTGAAGAAGTTTCTGAAAAGGATGCCAAGCAGATTATTGAgtgagaaggccttccatggttttacttagcaagtgtaatttaagatgtca Alignment from Exonerate_coding2genome GATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTGA agaacacatgcccaatatcacaaaggtggttttttttgtttgtttttcagGATGAAGAAGAAAAGTCCAGTAGGCAGGAAACCGAGGAAAAGATATTACTTGATCCCAATAGTGAAGAAGTTTCTGAAAAGGATGCCAAGCAGATTATTGAgtgagaaggccttccatggttttacttagcaagtgtaatttaagatgtca Alignment from GeneWise GATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTGA agaacacatgcccaatatcacaaaggtggttttttttgtttgtttttcagGATGAAGAAGAAAAGTCCAGTAGGCAGGAAACCGAGGAAAAGATATTACTTGATCCCAATAGTGAAGAAGTTTCTGAAAAGGATGCCAAGCAGATTATTGAgtgagaaggccttccatggttttacttagcaagtgtaatttaagatgtca #### Smarca2_ID5735_16 --> 0 - 0 Original Alignment GGTACCCCTGCCATGCGACGCTCCCTCGTTCCCCAGCTACGGAGTGGCAAATTCAATGTCCTCCTGACTACTTACGAGTACATTATAAAAGACAAGCACATTCTTGCAAAG gcaatgacattatgggtcctgtaggtaccgcccccacttgcttgcttcagGGTACCCCTGCAATGCGACGATCCCTTGTCCCCCAGCTACAGAGTGGCAAATTCAATGTCCTACTCACCACTTATGAGTACATCATAAAGGACAAGCATATTCTTGCAAAGgtatggcccttgctctttctgtcatgtcctacccttaattttgcagcagt Alignment from CESAR GGTACCCCTGCCATGCGACGCTCCCTCGTTCCCCAGCTACGGAGTGGCAAATTCAATGTCCTCCTGACTACTTACGAGTACATTATAAAAGACAAGCACATTCTTGCAAAG gcaatgacattatgggtcctgtaggtaccgcccccacttgcttgcttcagGGTACCCCTGCAATGCGACGATCCCTTGTCCCCCAGCTACAGAGTGGCAAATTCAATGTCCTACTCACCACTTATGAGTACATCATAAAGGACAAGCATATTCTTGCAAAGgtatggcccttgctctttctgtcatgtcctacccttaattttgcagcagt Alignment from Spaln_aa2Genome GGTACCCCTGCCATGCGACGCTCCCTCGTTCCCCAGCTACGGAGTGGCAAATTCAATGTCCTCCTGACTACTTACGAGTACATTATAAAAGACAAGCACATTCTTGCAAAG gcaatgacattatgggtcctgtaggtaccgcccccacttgcttgcttcagGGTACCCCTGCAATGCGACGATCCCTTGTCCCCCAGCTACAGAGTGGCAAATTCAATGTCCTACTCACCACTTATGAGTACATCATAAAGGACAAGCATATTCTTGCAAAGgtatggcccttgctctttctgtcatgtcctacccttaattttgcagcagt Alignment from Spaln_nt2Genome GGTACCCCTGCCATGCGACGCTCCCTCGTTCCCCAGCTACGGAGTGGCAAATTCAATGTCCTCCTGACTACTTACGAGTACATTATAAAAGACAAGCACATTCTTGCAAAG gcaatgacattatgggtcctgtaggtaccgcccccacttgcttgcttcagGGTACCCCTGCAATGCGACGATCCCTTGTCCCCCAGCTACAGAGTGGCAAATTCAATGTCCTACTCACCACTTATGAGTACATCATAAAGGACAAGCATATTCTTGCAAAGgtatggcccttgctctttctgtcatgtcctacccttaattttgcagcagt Alignment from Pairagon GGTACCCCTGCCATGCGACGCTCCCTCGTTCCCCAGCTACGGAGTGGCAAATTCAATGTCCTCCTGACTACTTACGAGTACATTATAAAAGACAAGCACATTCTTGCAAAG gcaatgacattatgggtcctgtaggtaccgcccccacttgcttgcttcagGGTACCCCTGCAATGCGACGATCCCTTGTCCCCCAGCTACAGAGTGGCAAATTCAATGTCCTACTCACCACTTATGAGTACATCATAAAGGACAAGCATATTCTTGCAAAGgtatggcccttgctctttctgtcatgtcctacccttaattttgcagcagt Alignment from Exonerate_protein2genome GGTACCCCTGCCATGCGACGCTCCCTCGTTCCCCAGCTACGGAGTGGCAAATTCAATGTCCTCCTGACTACTTACGAGTACATTATAAAAGACAAGCACATTCTTGCAAAG gcaatgacattatgggtcctgtaggtaccgcccccacttgcttgcttcagGGTACCCCTGCAATGCGACGATCCCTTGTCCCCCAGCTACAGAGTGGCAAATTCAATGTCCTACTCACCACTTATGAGTACATCATAAAGGACAAGCATATTCTTGCAAAGgtatggcccttgctctttctgtcatgtcctacccttaattttgcagcagt Alignment from Exonerate_coding2genome GGTACCCCTGCCATGCGACGCTCCCTCGTTCCCCAGCTACGGAGTGGCAAATTCAATGTCCTCCTGACTACTTACGAGTACATTATAAAAGACAAGCACATTCTTGCAAAG gcaatgacattatgggtcctgtaggtaccgcccccacttgcttgcttcagGGTACCCCTGCAATGCGACGATCCCTTGTCCCCCAGCTACAGAGTGGCAAATTCAATGTCCTACTCACCACTTATGAGTACATCATAAAGGACAAGCATATTCTTGCAAAGgtatggcccttgctctttctgtcatgtcctacccttaattttgcagcagt Alignment from GeneWise GGTACCCCTGCCATGCGACGCTCCCTCGTTCCCCAGCTACGGAGTGGCAAATTCAATGTCCTCCTGACTACTTACGAGTACATTATAAAAGACAAGCACATTCTTGCAAAG gcaatgacattatgggtcctgtaggtaccgcccccacttgcttgcttcagGGTACCCCTGCAATGCGACGATCCCTTGTCCCCCAGCTACAGAGTGGCAAATTCAATGTCCTACTCACCACTTATGAGTACATCATAAAGGACAAGCATATTCTTGCAAAGgtatggcccttgctctttctgtcatgtcctacccttaattttgcagcagt #### Smarca2_ID5744_21 --> 0 - 2 Original Alignment GAATCCTTTGCTGAACACCTGGGCTATTCGAATGGGGTCATCAATgg aatatcttactgttatacttgattcttaaattgttgtctcattttcttagGAGTCCTTTGCTGAACATCTGGGGTACTCTAATGGTGTCATTAACgggtgagtctacttcttttccttgttccacattgattaaaatggtcatttgc Alignment from CESAR GAATCCTTTGCTGAACACCTGGGCTATTCGAATGGGGTCATCAATgg aatatcttactgttatacttgattcttaaattgttgtctcattttcttagGAGTCCTTTGCTGAACATCTGGGGTACTCTAATGGTGTCATTAACgggtgagtctacttcttttccttgttccacattgattaaaatggtcatttgc Alignment from Spaln_aa2Genome GAATCCTTTGCTGAACACCTGGGCTATTCGAATGGGGTCATCAATGG aatatcttactgttatacttgattcttaaattgttgtctcattttcttagGAGTCCTTTGCTGAACATCTGGGGTACTCTAATGGTGTCATTAACGGgtgagtctacttcttttccttgttccacattgattaaaatggtcatttgc Alignment from Spaln_nt2Genome GAATCCTTTGCTGAACACCTGGGCTATTCGAATGGGGTCATCAATGG aatatcttactgttatacttgattcttaaattgttgtctcattttcttagGAGTCCTTTGCTGAACATCTGGGGTACTCTAATGGTGTCATTAACGGgtgagtctacttcttttccttgttccacattgattaaaatggtcatttgc Alignment from Pairagon GAATCCTTTGCTGAACACCTGGGCTATTCGAATGGGGTCATCAATGG aatatcttactgttatacttgattcttaaattgttgtctcattttcttagGAGTCCTTTGCTGAACATCTGGGGTACTCTAATGGTGTCATTAACGGgtgagtctacttcttttccttgttccacattgattaaaatggtcatttgc Alignment from Exonerate_protein2genome GAATCCTTTGCTGAACACCTGGGCTATTCGAATGGGGTCATCAATGG aatatcttactgttatacttgattcttaaattgttgtctcattttcttagGAGTCCTTTGCTGAACATCTGGGGTACTCTAATGGTGTCATTAACGGgtgagtctacttcttttccttgttccacattgattaaaatggtcatttgc Alignment from Exonerate_coding2genome GAATCCTTTGCTGAACACCTGGGCTATTCGAATGGGGTCATCAATGG aatatcttactgttatacttgattcttaaattgttgtctcattttcttagGAGTCCTTTGCTGAACATCTGGGGTACTCTAATGGTGTCATTAACGGgtgagtctacttcttttccttgttccacattgattaaaatggtcatttgc Alignment from GeneWise GAATCCTTTGCTGAACACCTGGGCTATTCGAATGGGGTCATCAATGG aatatcttactgttatacttgattcttaaattgttgtctcattttcttagGAGTCCTTTGCTGAACATCTGGGGTACTCTAATGGTGTCATTAACGGgtgagtctacttcttttccttgttccacattgattaaaatggtcatttgc #### Smarca2_ID5747_24 --> 0 - 0 Original Alignment GATCTGCAGGCCCAAGACCGAGCTCACCGCATTGGCCAACAAAACGAGGTCCGGGTGCTGAGGCTTTGCACCGTCAACAGTGTGGAGGAAAAGATTCTCGCGGCTGCCAAGTACAAGCTGAACGTGGATCAGAAGGTTATCCAAGCAGGCATGTTTGACCAGAAGTCATCCAGCCACGAGCGGAGGGCCTTCCTGCAGGCCATTCTGGAGCACGAGGAGGAGAATGAG gatgctctaggtattcagccattctctactgaccttctctttcctgccagGACCTGCAGGCAAAGGACCGTGCTCACCACATTGGTGAACAAAACAAAGCACGAGTATTGCGGCTGTGCTCTGTTAACAGTGTGGAGGAAAAAATTCTTGCTTCCGCCAAGTATAAGTTAACTGTGGATCAAAAGGTGATCCAAGCAGGCATGTTTGACCCCAAGTCATCCTGCCATGAGCATAGAGCTTTCCTGCAGGTCATATTAGAACACCAAGAGGAAAATGAGgtagggtagaaagtggcataggcatcttccaatatactagataagcttgc Alignment from CESAR GATCTGCAGGCCCAAGACCGAGCTCACCGCATTGGCCAACAAAACGAGGTCCGGGTGCTGAGGCTTTGCACCGTCAACAGTGTGGAGGAAAAGATTCTCGCGGCTGCCAAGTACAAGCTGAACGTGGATCAGAAGGTTATCCAAGCAGGCATGTTTGACCAGAAGTCATCCAGCCACGAGCGGAGGGCCTTCCTGCAGGCCATTCTGGAGCACGAGGAGGAGAATGAG gatgctctaggtattcagccattctctactgaccttctctttcctgccagGACCTGCAGGCAAAGGACCGTGCTCACCACATTGGTGAACAAAACAAAGCACGAGTATTGCGGCTGTGCTCTGTTAACAGTGTGGAGGAAAAAATTCTTGCTTCCGCCAAGTATAAGTTAACTGTGGATCAAAAGGTGATCCAAGCAGGCATGTTTGACCCCAAGTCATCCTGCCATGAGCATAGAGCTTTCCTGCAGGTCATATTAGAACACCAAGAGGAAAATGAGgtagggtagaaagtggcataggcatcttccaatatactagataagcttgc Alignment from Spaln_aa2Genome GATCTGCAGGCCCAAGACCGAGCTCACCGCATTGGCCAACAAAACGAGGTCCGGGTGCTGAGGCTTTGCACCGTCAACAGTGTGGAGGAAAAGATTCTCGCGGCTGCCAAGTACAAGCTGAACGTGGATCAGAAGGTTATCCAAGCAGGCATGTTTGACCAGAAGTCATCCAGCCACGAGCGGAGGGCCTTCCTGCAGGCCATTCTGGAGCACGAGGAGGAGAATGAG gatgctctaggtattcagccattctctactgaccttctctttcctgccagGACCTGCAGGCAAAGGACCGTGCTCACCACATTGGTGAACAAAACAAAGCACGAGTATTGCGGCTGTGCTCTGTTAACAGTGTGGAGGAAAAAATTCTTGCTTCCGCCAAGTATAAGTTAACTGTGGATCAAAAGGTGATCCAAGCAGGCATGTTTGACCCCAAGTCATCCTGCCATGAGCATAGAGCTTTCCTGCAGGTCATATTAGAACACCAAGAGGAAAATGAGgtagggtagaaagtggcataggcatcttccaatatactagataagcttgc Alignment from Spaln_nt2Genome GATCTGCAGGCCCAAGACCGAGCTCACCGCATTGGCCAACAAAACGAGGTCCGGGTGCTGAGGCTTTGCACCGTCAACAGTGTGGAGGAAAAGATTCTCGCGGCTGCCAAGTACAAGCTGAACGTGGATCAGAAGGTTATCCAAGCAGGCATGTTTGACCAGAAGTCATCCAGCCACGAGCGGAGGGCCTTCCTGCAGGCCATTCTGGAGCACGAGGAGGAGAATGAG gatgctctaggtattcagccattctctactgaccttctctttcctgccagGACCTGCAGGCAAAGGACCGTGCTCACCACATTGGTGAACAAAACAAAGCACGAGTATTGCGGCTGTGCTCTGTTAACAGTGTGGAGGAAAAAATTCTTGCTTCCGCCAAGTATAAGTTAACTGTGGATCAAAAGGTGATCCAAGCAGGCATGTTTGACCCCAAGTCATCCTGCCATGAGCATAGAGCTTTCCTGCAGGTCATATTAGAACACCAAGAGGAAAATGAGgtagggtagaaagtggcataggcatcttccaatatactagataagcttgc Alignment from Pairagon GATCTGCAGGCCCAAGACCGAGCTCACCGCATTGGCCAACAAAACGAGGTCCGGGTGCTGAGGCTTTGCACCGTCAACAGTGTGGAGGAAAAGATTCTCGCGGCTGCCAAGTACAAGCTGAACGTGGATCAGAAGGTTATCCAAGCAGGCATGTTTGACCAGAAGTCATCCAGCCACGAGCGGAGGGCCTTCCTGCAGGCCATTCTGGAGCACGAGGAGGAGAATGAG gatgctctaggtattcagccattctctactgaccttctctttcctgccagGACCTGCAGGCAAAGGACCGTGCTCACCACATTGGTGAACAAAACAAAGCACGAGTATTGCGGCTGTGCTCTGTTAACAGTGTGGAGGAAAAAATTCTTGCTTCCGCCAAGTATAAGTTAACTGTGGATCAAAAGGTGATCCAAGCAGGCATGTTTGACCCCAAGTCATCCTGCCATGAGCATAGAGCTTTCCTGCAGGTCATATTAGAACACCAAGAGGAAAATGAGgtagggtagaaagtggcataggcatcttccaatatactagataagcttgc Alignment from Exonerate_protein2genome GATCTGCAGGCCCAAGACCGAGCTCACCGCATTGGCCAACAAAACGAGGTCCGGGTGCTGAGGCTTTGCACCGTCAACAGTGTGGAGGAAAAGATTCTCGCGGCTGCCAAGTACAAGCTGAACGTGGATCAGAAGGTTATCCAAGCAGGCATGTTTGACCAGAAGTCATCCAGCCACGAGCGGAGGGCCTTCCTGCAGGCCATTCTGGAGCACGAGGAGGAGAATGAG gatgctctaggtattcagccattctctactgaccttctctttcctgccagGACCTGCAGGCAAAGGACCGTGCTCACCACATTGGTGAACAAAACAAAGCACGAGTATTGCGGCTGTGCTCTGTTAACAGTGTGGAGGAAAAAATTCTTGCTTCCGCCAAGTATAAGTTAACTGTGGATCAAAAGGTGATCCAAGCAGGCATGTTTGACCCCAAGTCATCCTGCCATGAGCATAGAGCTTTCCTGCAGGTCATATTAGAACACCAAGAGGAAAATGAGgtagggtagaaagtggcataggcatcttccaatatactagataagcttgc Alignment from Exonerate_coding2genome GATCTGCAGGCCCAAGACCGAGCTCACCGCATTGGCCAACAAAACGAGGTCCGGGTGCTGAGGCTTTGCACCGTCAACAGTGTGGAGGAAAAGATTCTCGCGGCTGCCAAGTACAAGCTGAACGTGGATCAGAAGGTTATCCAAGCAGGCATGTTTGACCAGAAGTCATCCAGCCACGAGCGGAGGGCCTTCCTGCAGGCCATTCTGGAGCACGAGGAGGAGAATGAG gatgctctaggtattcagccattctctactgaccttctctttcctgccagGACCTGCAGGCAAAGGACCGTGCTCACCACATTGGTGAACAAAACAAAGCACGAGTATTGCGGCTGTGCTCTGTTAACAGTGTGGAGGAAAAAATTCTTGCTTCCGCCAAGTATAAGTTAACTGTGGATCAAAAGGTGATCCAAGCAGGCATGTTTGACCCCAAGTCATCCTGCCATGAGCATAGAGCTTTCCTGCAGGTCATATTAGAACACCAAGAGGAAAATGAGgtagggtagaaagtggcataggcatcttccaatatactagataagcttgc Alignment from GeneWise GATCTGCAGGCCCAAGACCGAGCTCACCGCATTGGCCAACAAAACGAGGTCCGGGTGCTGAGGCTTTGCACCGTCAACAGTGTGGAGGAAAAGATTCTCGCGGCTGCCAAGTACAAGCTGAACGTGGATCAGAAGGTTATCCAAGCAGGCATGTTTGACCAGAAGTCATCCAGCCACGAGCGGAGGGCCTTCCTGCAGGCCATTCTGGAGCACGAGGAGGAGAATGAG gatgctctaggtattcagccattctctactgaccttctctttcctgccagGACCTGCAGGCAAAGGACCGTGCTCACCACATTGGTGAACAAAACAAAGCACGAGTATTGCGGCTGTGCTCTGTTAACAGTGTGGAGGAAAAAATTCTTGCTTCCGCCAAGTATAAGTTAACTGTGGATCAAAAGGTGATCCAAGCAGGCATGTTTGACCCCAAGTCATCCTGCCATGAGCATAGAGCTTTCCTGCAGGTCATATTAGAACACCAAGAGGAAAATGAGgtagggtagaaagtggcataggcatcttccaatatactagataagcttgc #### Smc3_ID11314_2 --> 0 - 1 Original Alignment GTGATCATCCAGGGCTTCCGAAGTTACCGAGACCAAACAATTGTAGATCCCTTCAGCTCCAAACATAATGTCATCg tctgaattgtgctattattttttctttgcctcctgcccacgacattgcagGTAATCATCCAGGGCTTCCAAAGTTACCAAGACCAAACAATTGTAGACCCCTTCAGCTCAAAACACAATGTCATTggtaatgacgattataatgttttatggacacttcctacattgtgagacccc Alignment from CESAR GTGATCATCCAGGGCTTCCGAAGTTACCGAGACCAAACAATTGTAGATCCCTTCAGCTCCAAACATAATGTCATCg tctgaattgtgctattattttttctttgcctcctgcccacgacattgcagGTAATCATCCAGGGCTTCCAAAGTTACCAAGACCAAACAATTGTAGACCCCTTCAGCTCAAAACACAATGTCATTggtaatgacgattataatgttttatggacacttcctacattgtgagacccc Alignment from Spaln_aa2Genome GTGATCATCCAGGGCTTCCGAAGTTACCGAGACCAAACAATTGTAGATCCCTTCAGCTCCAAACATAATGTCATCG tctgaattgtgctattattttttctttgcctcctgcccacgacattgcagGTAATCATCCAGGGCTTCCAAAGTTACCAAGACCAAACAATTGTAGACCCCTTCAGCTCAAAACACAATGTCATTGgtaatgacgattataatgttttatggacacttcctacattgtgagacccc Alignment from Spaln_nt2Genome GTGATCATCCAGGGCTTCCGAAGTTACCGAGACCAAACAATTGTAGATCCCTTCAGCTCCAAACATAATGTCATCG tctgaattgtgctattattttttctttgcctcctgcccacgacattgcagGTAATCATCCAGGGCTTCCAAAGTTACCAAGACCAAACAATTGTAGACCCCTTCAGCTCAAAACACAATGTCATTGgtaatgacgattataatgttttatggacacttcctacattgtgagacccc Alignment from Pairagon GTGATCATCCAGGGCTTCCGAAGTTACCGAGACCAAACAATTGTAGATCCCTTCAGCTCCAAACATAATGTCATCG tctgaattgtgctattattttttctttgcctcctgcccacgacattgcagGTAATCATCCAGGGCTTCCAAAGTTACCAAGACCAAACAATTGTAGACCCCTTCAGCTCAAAACACAATGTCATTGgtaatgacgattataatgttttatggacacttcctacattgtgagacccc Alignment from Exonerate_protein2genome CAGGTGATCATCCAGGGCTTCCGAAGTTACCGAGACCAAACAATTGTAGATCCCTTCAGCTCCAAACATAATGTCATCG tctgaattgtgctattattttttctttgcctcctgcccacgacattgCAGGTAATCATCCAGGGCTTCCAAAGTTACCAAGACCAAACAATTGTAGACCCCTTCAGCTCAAAACACAATGTCATTGgtaatgacgattataatgttttatggacacttcctacattgtgagacccc Alignment from Exonerate_coding2genome tctgaattgtgctattattttttctttgcctcctgcccacgacattgcaggtaatcatccagggcttccaaagttaccaagaccaaacaattgtagaccccttcagctcaaaacacaatgtcattggtaatgacgattataatgttttatggacacttcctacattgtgagacccc Alignment from GeneWise TACATCAAGCAGGTGATCATCCAGGGCTTCCGAAGTTACCGAGACCAAACAATTGTAGATCCCTTCAGCTCCAAACATAATGTCATCG gaattgtgctattattttttctttgcctcctgcccacg---ACATTGCAGGTAATCATCCAGGGCTTCCAAAGTTACCAAGACCAAACAATTGTAGACCCCTTCAGCTCAAAACACAATGTCATTGgtaatgacgattataatgttttatggacacttcctacattgtgagacccc #### Smc3_ID11322_10 --> 0 - 0 Original Alignment CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG atttttatccaatgttcgaagtagatagcctcactggaacctgcttgcagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGAAATCAAGACAACTAAGGGATGCACAGCAGGATACAAGAGATAAAATGGAGgtaagttgacacctaaggtcatacctgatttccaatgttacttgtactga Alignment from CESAR CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG atttttatccaatgttcgaagtagatagcctcactggaacctgcttgcagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGAAATCAAGACAACTAAGGGATGCACAGCAGGATACAAGAGATAAAATGGAGgtaagttgacacctaaggtcatacctgatttccaatgttacttgtactga Alignment from Spaln_aa2Genome CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG atttttatccaatgttcgaagtagatagcctcactggaacctgcttgcagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGAAATCAAGACAACTAAGGGATGCACAGCAGGATACAAGAGATAAAATGGAGgtaagttgacacctaaggtcatacctgatttccaatgttacttgtactga Alignment from Spaln_nt2Genome CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG atttttatccaatgttcgaagtagatagcctcactggaacctgcttgcagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGAAATCAAGACAACTAAGGGATGCACAGCAGGATACAAGAGATAAAATGGAGgtaagttgacacctaaggtcatacctgatttccaatgttacttgtactga Alignment from Pairagon CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG atttttatccaatgttcgaagtagatagcctcactggaacctgcttgcagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGAAATCAAGACAACTAAGGGATGCACAGCAGGATACAAGAGATAAAATGGAGgtaagttgacacctaaggtcatacctgatttccaatgttacttgtactga Alignment from Exonerate_protein2genome CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG atttttatccaatgttcgaagtagatagcctcactggaacctgcttgcagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGAAATCAAGACAACTAAGGGATGCACAGCAGGATACAAGAGATAAAATGGAGgtaagttgacacctaaggtcatacctgatttccaatgttacttgtactga Alignment from Exonerate_coding2genome CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG atttttatccaatgttcgaagtagatagcctcactggaacctgcttgcagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGAAATCAAGACAACTAAGGGATGCACAGCAGGATACAAGAGATAAAATGGAGgtaagttgacacctaaggtcatacctgatttccaatgttacttgtactga Alignment from GeneWise CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG atttttatccaatgttcgaagtagatagcctcactggaacctgcttgcagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGAAATCAAGACAACTAAGGGATGCACAGCAGGATACAAGAGATAAAATGGAGgtaagttgacacctaaggtcatacctgatttccaatgttacttgtactga #### Smc3_ID11327_15 --> 1 - 0 Original Alignment tTACTTGTGGAGAGAGGAGAATGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGACCTTGAGAAGAAGCAGCAACTTCTTAGAGCGGCAACAGGAAAG gctcagtgagtaacttttagcaccactgtcactcctattttccctttcagtTACTTGTGGCGAGAGGAAAATGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGGCCTTGAAAAGAAGCAGCAACTTCTTAGAGCAGCAACTGGAAAGgtaaggaaatctcaattgacatactaatttatataatgactttgttcaat Alignment from CESAR tTACTTGTGGAGAGAGGAGAATGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGACCTTGAGAAGAAGCAGCAACTTCTTAGAGCGGCAACAGGAAAG gctcagtgagtaacttttagcaccactgtcactcctattttccctttcagtTACTTGTGGCGAGAGGAAAATGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGGCCTTGAAAAGAAGCAGCAACTTCTTAGAGCAGCAACTGGAAAGgtaaggaaatctcaattgacatactaatttatataatgactttgttcaat Alignment from Spaln_aa2Genome TTACTTGTGGAGAGAGGAGAATGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGACCTTGAGAAGAAGCAGCAACTTCTTAGAGCGGCAACAGGAAAG gctcagtgagtaacttttagcaccactgtcactcctattttccctttcagTTACTTGTGGCGAGAGGAAAATGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGGCCTTGAAAAGAAGCAGCAACTTCTTAGAGCAGCAACTGGAAAGgtaaggaaatctcaattgacatactaatttatataatgactttgttcaat Alignment from Spaln_nt2Genome TTACTTGTGGAGAGAGGAGAATGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGACCTTGAGAAGAAGCAGCAACTTCTTAGAGCGGCAACAGGAAAG gctcagtgagtaacttttagcaccactgtcactcctattttccctttcagTTACTTGTGGCGAGAGGAAAATGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGGCCTTGAAAAGAAGCAGCAACTTCTTAGAGCAGCAACTGGAAAGgtaaggaaatctcaattgacatactaatttatataatgactttgttcaat Alignment from Pairagon TTACTTGTGGAGAGAGGAGAATGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGACCTTGAGAAGAAGCAGCAACTTCTTAGAGCGGCAACAGGAAAG gctcagtgagtaacttttagcaccactgtcactcctattttccctttcagTTACTTGTGGCGAGAGGAAAATGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGGCCTTGAAAAGAAGCAGCAACTTCTTAGAGCAGCAACTGGAAAGgtaaggaaatctcaattgacatactaatttatataatgactttgttcaat Alignment from Exonerate_protein2genome TTACTTGTGGAGAGAGGAGAATGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGACCTTGAGAAGAAGCAGCAACTTCTTAGAGCGGCAACAGGAAAG gctcagtgagtaacttttagcaccactgtcactcctattttccctttcagTTACTTGTGGCGAGAGGAAAATGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGGCCTTGAAAAGAAGCAGCAACTTCTTAGAGCAGCAACTGGAAAGgtaaggaaatctcaattgacatactaatttatataatgactttgttcaat Alignment from Exonerate_coding2genome TTACTTGTGGAGAGAGGAGAATGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGACCTTGAGAAGAAGCAGCAACTTCTTAGAGCGGCAACAGGAAAG gctcagtgagtaacttttagcaccactgtcactcctattttccctttcagTTACTTGTGGCGAGAGGAAAATGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGGCCTTGAAAAGAAGCAGCAACTTCTTAGAGCAGCAACTGGAAAGgtaaggaaatctcaattgacatactaatttatataatgactttgttcaat Alignment from GeneWise TTACTTGTGGAGAGAGGAGAATGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGACCTTGAGAAGAAGCAGCAACTTCTTAGAGCGGCAACAGGAAAG gctcagtgagtaacttttagcaccactgtcactcctattttccctttcagTTACTTGTGGCGAGAGGAAAATGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGGCCTTGAAAAGAAGCAGCAACTTCTTAGAGCAGCAACTGGAAAGgtaaggaaatctcaattgacatactaatttatataatgactttgttcaat #### Smc3_ID11339_27 --> 0 - 1 Original Alignment GTGTCATTTACAGGGAAGCAAGGGGAGATGAGAGAAATGCAG---CAGCTCTCAGGAGGACAGAAATCTCTGGTAGCCCTTGCTCTCATCTTTGCCATTCAGAAATGCGACCCTGCTCCTTTTTACCTGTTTGATGAGATCGACCAAGCTTTGGATGCTCAGCACAGAAAAGCCGTGTCAg ctgatgtacctttttactttaaaacacacccaaccccccaaccccggcagCTGTCATTTACAGGGAAACGGGGTGAGATGAGAGAAATGCAGCAGCAGCTCTCTGGAGGACAGAAATCTCCAGTAGCCCTTGTTCTTATCTTTGCAATTCAGAAGTGTGACCCAGCTCCATTCTACCTTTTTGATGAGGTTGACCAAGCTTCAGATGAGCAACATAGGAAATCAGTGTCAggtgagtatctattgtaagctagaaaagagggagaggtgcacgggaccctc Alignment from CESAR GTGTCATTTACAGGGAAGCAAGGGGAGATGAGAGAAATG---CAGCAGCTCTCAGGAGGACAGAAATCTCTGGTAGCCCTTGCTCTCATCTTTGCCATTCAGAAATGCGACCCTGCTCCTTTTTACCTGTTTGATGAGATCGACCAAGCTTTGGATGCTCAGCACAGAAAAGCCGTGTCAg ctgatgtacctttttactttaaaacacacccaaccccccaaccccggcagCTGTCATTTACAGGGAAACGGGGTGAGATGAGAGAAATGCAGCAGCAGCTCTCTGGAGGACAGAAATCTCCAGTAGCCCTTGTTCTTATCTTTGCAATTCAGAAGTGTGACCCAGCTCCATTCTACCTTTTTGATGAGGTTGACCAAGCTTCAGATGAGCAACATAGGAAATCAGTGTCAggtgagtatctattgtaagctagaaaagagggagaggtgcacgggaccctc Alignment from Spaln_aa2Genome GTGTCATTTACAGGGAAGCAAGGGGAGATGAGAGAAATG---CAGCAGCTCTCAGGAGGACAGAAATCTCTGGTAGCCCTTGCTCTCATCTTTGCCATTCAGAAATGCGACCCTGCTCCTTTTTACCTGTTTGATGAGATCGACCAAGCTTTGGATGCTCAGCACAGAAAAGCCGTGTCAG ctgatgtacctttttactttaaaacacacccaaccccccaaccccggcagCTGTCATTTACAGGGAAACGGGGTGAGATGAGAGAAATGCAGCAGCAGCTCTCTGGAGGACAGAAATCTCCAGTAGCCCTTGTTCTTATCTTTGCAATTCAGAAGTGTGACCCAGCTCCATTCTACCTTTTTGATGAGGTTGACCAAGCTTCAGATGAGCAACATAGGAAATCAGTGTCAGgtgagtatctattgtaagctagaaaagagggagaggtgcacgggaccctc Alignment from Spaln_nt2Genome GTGTCATTTACAGGGAAGCAAGGGGAGATGAGAGAAAT---GCAGCAGCTCTCAGGAGGACAGAAATCTCTGGTAGCCCTTGCTCTCATCTTTGCCATTCAGAAATGCGACCCTGCTCCTTTTTACCTGTTTGATGAGATCGACCAAGCTTTGGATGCTCAGCACAGAAAAGCCGTGTCAG ctgatgtacctttttactttaaaacacacccaaccccccaaccccggcagCTGTCATTTACAGGGAAACGGGGTGAGATGAGAGAAATGCAGCAGCAGCTCTCTGGAGGACAGAAATCTCCAGTAGCCCTTGTTCTTATCTTTGCAATTCAGAAGTGTGACCCAGCTCCATTCTACCTTTTTGATGAGGTTGACCAAGCTTCAGATGAGCAACATAGGAAATCAGTGTCAGgtgagtatctattgtaagctagaaaagagggagaggtgcacgggaccctc Alignment from Pairagon GTGTCATTTACAGGGAAGCAAGGGGAGATGAGAGAAAT---GCAGCAGCTCTCAGGAGGACAGAAATCTCTGGTAGCCCTTGCTCTCATCTTTGCCATTCAGAAATGCGACCCTGCTCCTTTTTACCTGTTTGATGAGATCGACCAAGCTTTGGATGCTCAGCACAGAAAAGCCGTGTCAG ctgatgtacctttttactttaaaacacacccaaccccccaaccccggcagCTGTCATTTACAGGGAAACGGGGTGAGATGAGAGAAATGCAGCAGCAGCTCTCTGGAGGACAGAAATCTCCAGTAGCCCTTGTTCTTATCTTTGCAATTCAGAAGTGTGACCCAGCTCCATTCTACCTTTTTGATGAGGTTGACCAAGCTTCAGATGAGCAACATAGGAAATCAGTGTCAGgtgagtatctattgtaagctagaaaagagggagaggtgcacgggaccctc Alignment from Exonerate_protein2genome GTGTCATTTACAGGGAAGCAAGGGGAGATGAGAGAAATG---CAGCAGCTCTCAGGAGGACAGAAATCTCTGGTAGCCCTTGCTCTCATCTTTGCCATTCAGAAATGCGACCCTGCTCCTTTTTACCTGTTTGATGAGATCGACCAAGCTTTGGATGCTCAGCACAGAAAAGCCGTGTCAG ctgatgtacctttttactttaaaacacacccaaccccccaaccccggcagCTGTCATTTACAGGGAAACGGGGTGAGATGAGAGAAATGCAGCAGCAGCTCTCTGGAGGACAGAAATCTCCAGTAGCCCTTGTTCTTATCTTTGCAATTCAGAAGTGTGACCCAGCTCCATTCTACCTTTTTGATGAGGTTGACCAAGCTTCAGATGAGCAACATAGGAAATCAGTGTCAGgtgagtatctattgtaagctagaaaagagggagaggtgcacgggaccctc Alignment from Exonerate_coding2genome GTGTCATTTACAGGGAAGCAAGGGGAGATGAGAGAAATG---CAGCAGCTCTCAGGAGGACAGAAATCTCTGGTAGCCCTTGCTCTCATCTTTGCCATTCAGAAATGCGACCCTGCTCCTTTTTACCTGTTTGATGAGATCGACCAAGCTTTGGATGCTCAGCACAGAAAAGCCGTGTCAG ctgatgtacctttttactttaaaacacacccaaccccccaaccccggcagCTGTCATTTACAGGGAAACGGGGTGAGATGAGAGAAATGCAGCAGCAGCTCTCTGGAGGACAGAAATCTCCAGTAGCCCTTGTTCTTATCTTTGCAATTCAGAAGTGTGACCCAGCTCCATTCTACCTTTTTGATGAGGTTGACCAAGCTTCAGATGAGCAACATAGGAAATCAGTGTCAGgtgagtatctattgtaagctagaaaagagggagaggtgcacgggaccctc Alignment from GeneWise -----------------------------------------------------TCATTTACAGGGAAGCAAGGGGAGATGAGAGAAATG---CAGCAGCTCTCAGGAGGACAGAAATCTCTGGTAGCCCTTGCTCTCATCTTTGCCATTCAGAAATGCGACCCTGCTCCTTTTTACCTGTTTGATGAGATCGACCAAGCTTTGGATGCTCAGCACAGAAAAGCCGTGTCAG CTGATGTACCTTTTTACTTTAAAACACACCCAACCCCCCAACCCCGGCAGCTGTCATTTACAGGGAAACGGGGTGAGATGAGAGAAATGCAGCAGCAGCTCTCTGGAGGACAGAAATCTCCAGTAGCCCTTGTTCTTATCTTTGCAATTCAGAAGTGTGACCCAGCTCCATTCTACCTTTTTGATGAGGTTGACCAAGCTTCAGATGAGCAACATAGGAAATCAGTGTCAGgtgagtatctattgtaagctagaaaagagggagaggtgcacgggaccctc #### Smc5_ID5116_17 --> 0 - 0 Original Alignment ATATGCACTTCTTTTCAAATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTGATCTCTGAGAAGAACAAGTTAGAAGCAGATTACATGGCGTCATCTTCCCAGCTGCGCGTCACAGAA attccagataataaccataatatcagaaaggaccgccctcaccccaccagATATGCACTTCTTTTCAGATTCAAAAAGTTGATTTGATCCTTCAAAATACTACAGTTATCTCTGAGAAGAATAAGTTAGAAGCAGATGATATGGCATCATCCTCCCAGTTGCGTGTCACAGAAgtaagggttatttgtttaagattgatccactccccacaacacatcatcta Alignment from CESAR ATATGCACTTCTTTTCAAATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTGATCTCTGAGAAGAACAAGTTAGAAGCAGATTACATGGCGTCATCTTCCCAGCTGCGCGTCACAGAA attccagataataaccataatatcagaaaggaccgccctcaccccaccagATATGCACTTCTTTTCAGATTCAAAAAGTTGATTTGATCCTTCAAAATACTACAGTTATCTCTGAGAAGAATAAGTTAGAAGCAGATGATATGGCATCATCCTCCCAGTTGCGTGTCACAGAAgtaagggttatttgtttaagattgatccactccccacaacacatcatcta Alignment from Spaln_aa2Genome ATATGCACTTCTTTTCAAATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTGATCTCTGAGAAGAACAAGTTAGAAGCAGATTACATGGCGTCATCTTCCCAGCTGCGCGTCACAGAA attccagataataaccataatatcagaaaggaccgccctcaccccaccagATATGCACTTCTTTTCAGATTCAAAAAGTTGATTTGATCCTTCAAAATACTACAGTTATCTCTGAGAAGAATAAGTTAGAAGCAGATGATATGGCATCATCCTCCCAGTTGCGTGTCACAGAAgtaagggttatttgtttaagattgatccactccccacaacacatcatcta Alignment from Spaln_nt2Genome ATATGCACTTCTTTTCAAATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTGATCTCTGAGAAGAACAAGTTAGAAGCAGATTACATGGCGTCATCTTCCCAGCTGCGCGTCACAGAA attccagataataaccataatatcagaaaggaccgccctcaccccaccagATATGCACTTCTTTTCAGATTCAAAAAGTTGATTTGATCCTTCAAAATACTACAGTTATCTCTGAGAAGAATAAGTTAGAAGCAGATGATATGGCATCATCCTCCCAGTTGCGTGTCACAGAAgtaagggttatttgtttaagattgatccactccccacaacacatcatcta Alignment from Pairagon ATATGCACTTCTTTTCAAATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTGATCTCTGAGAAGAACAAGTTAGAAGCAGATTACATGGCGTCATCTTCCCAGCTGCGCGTCACAGAA attccagataataaccataatatcagaaaggaccgccctcaccccaccagATATGCACTTCTTTTCAGATTCAAAAAGTTGATTTGATCCTTCAAAATACTACAGTTATCTCTGAGAAGAATAAGTTAGAAGCAGATGATATGGCATCATCCTCCCAGTTGCGTGTCACAGAAgtaagggttatttgtttaagattgatccactccccacaacacatcatcta Alignment from Exonerate_protein2genome ATATGCACTTCTTTTCAAATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTGATCTCTGAGAAGAACAAGTTAGAAGCAGATTACATGGCGTCATCTTCCCAGCTGCGCGTCACAGAA attccagataataaccataatatcagaaaggaccgccctcaccccaccagATATGCACTTCTTTTCAGATTCAAAAAGTTGATTTGATCCTTCAAAATACTACAGTTATCTCTGAGAAGAATAAGTTAGAAGCAGATGATATGGCATCATCCTCCCAGTTGCGTGTCACAGAAgtaagggttatttgtttaagattgatccactccccacaacacatcatcta Alignment from Exonerate_coding2genome ATATGCACTTCTTTTCAAATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTGATCTCTGAGAAGAACAAGTTAGAAGCAGATTACATGGCGTCATCTTCCCAGCTGCGCGTCACAGAA attccagataataaccataatatcagaaaggaccgccctcaccccaccagATATGCACTTCTTTTCAGATTCAAAAAGTTGATTTGATCCTTCAAAATACTACAGTTATCTCTGAGAAGAATAAGTTAGAAGCAGATGATATGGCATCATCCTCCCAGTTGCGTGTCACAGAAgtaagggttatttgtttaagattgatccactccccacaacacatcatcta Alignment from GeneWise ATATGCACTTCTTTTCAAATTCAAAAAGTTGATTTGATTCTTCAAAATACTACAGTGATCTCTGAGAAGAACAAGTTAGAAGCAGATTACATGGCGTCATCTTCCCAGCTGCGCGTCACAGAA attccagataataaccataatatcagaaaggaccgccctcaccccaccagATATGCACTTCTTTTCAGATTCAAAAAGTTGATTTGATCCTTCAAAATACTACAGTTATCTCTGAGAAGAATAAGTTAGAAGCAGATGATATGGCATCATCCTCCCAGTTGCGTGTCACAGAAgtaagggttatttgtttaagattgatccactccccacaacacatcatcta #### Smc5_ID5124_9 --> 0 - 1 Original Alignment ATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCGTCACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGATAAACAGCGAGAAAAGGAAATGCTGGAGAAGCAGAGACGGa cttgattctggtgaagactgttgtctgggcctgcccttctcctcccacagATTAAGGAACTTCAACAGGCATTGACAGTTAAGCAAAATGAAGAGTTGGACCGACAGAAGAGAATAGGTAACACATGCAAGATGATAGAGGATCTTCAAAGTGAGCTCAAAACTGCAGAGAATTGTGAGAACCCTCAGCCTCAGATTGATACAATCACAAATGATCAAAGGCAAGTACAGGAGGTCAAGGCCCTATGTGAAGGTGAGATTCTTGACAAACAGAGAGAGAAGGAAATGCTTGAAATACACAGGCGTagtgaggttgaggtgaagcgatcagacacagttggggactgggccatcttt Alignment from CESAR ATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCGTCACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGATAAACAGCGAGAAAAGGAAATGCTGGAGAAGCAGAGACGGa cttgattctggtgaagactgttgtctgggcctgcccttctcctcccacagATTAAGGAACTTCAACAGGCATTGACAGTTAAGCAAAATGAAGAGTTGGACCGACAGAAGAGAATAGGTAACACATGCAAGATGATAGAGGATCTTCAAAGTGAGCTCAAAACTGCAGAGAATTGTGAGAACCCTCAGCCTCAGATTGATACAATCACAAATGATCAAAGGCAAGTACAGGAGGTCAAGGCCCTATGTGAAGGTGAGATTCTTGACAAACAGAGAGAGAAGGAAATGCTTGAAATACACAGGCGTagtgaggttgaggtgaagcgatcagacacagttggggactgggccatcttt Alignment from Spaln_aa2Genome ATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCGTCACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGATAAACAGCGAGAAAAGGAAATGCTGGAGAAGCAGAGACGGA cttgattctggtgaagactgttgtctgggcctgcccttctcctcccacagATTAAGGAACTTCAACAGGCATTGACAGTTAAGCAAAATGAAGAGTTGGACCGACAGAAGAGAATAGGTAACACATGCAAGATGATAGAGGATCTTCAAAGTGAGCTCAAAACTGCAGAGAATTGTGAGAACCCTCAGCCTCAGATTGATACAATCACAAATGATCAAAGGCAAGTACAGGAGGTCAAGGCCCTATGTGAAGGTGAGATTCTTGACAAACAGAGAGAGAAGGAAATGCTTGAAATACACAGGCGTAgtgaggttgaggtgaagcgatcagacacagttggggactgggccatcttt Alignment from Spaln_nt2Genome ATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCGTCACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGATAAACAGCGAGAAAAGGAAATGCTGGAGAAGCAGAGACGGA cttgattctggtgaagactgttgtctgggcctgcccttctcctcccacagATTAAGGAACTTCAACAGGCATTGACAGTTAAGCAAAATGAAGAGTTGGACCGACAGAAGAGAATAGGTAACACATGCAAGATGATAGAGGATCTTCAAAGTGAGCTCAAAACTGCAGAGAATTGTGAGAACCCTCAGCCTCAGATTGATACAATCACAAATGATCAAAGGCAAGTACAGGAGGTCAAGGCCCTATGTGAAGGTGAGATTCTTGACAAACAGAGAGAGAAGGAAATGCTTGAAATACACAGGCGTAgtgaggttgaggtgaagcgatcagacacagttggggactgggccatcttt Alignment from Pairagon ATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCGTCACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGATAAACAGCGAGAAAAGGAAATGCTGGAGAAGCAGAGACGGA cttgattctggtgaagactgttgtctgggcctgcccttctcctcccacagATTAAGGAACTTCAACAGGCATTGACAGTTAAGCAAAATGAAGAGTTGGACCGACAGAAGAGAATAGGTAACACATGCAAGATGATAGAGGATCTTCAAAGTGAGCTCAAAACTGCAGAGAATTGTGAGAACCCTCAGCCTCAGATTGATACAATCACAAATGATCAAAGGCAAGTACAGGAGGTCAAGGCCCTATGTGAAGGTGAGATTCTTGACAAACAGAGAGAGAAGGAAATGCTTGAAATACACAGGCGTAgtgaggttgaggtgaagcgatcagacacagttggggactgggccatcttt Alignment from Exonerate_protein2genome ATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCGTCACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGATAAACAGCGAGAAAAGGAAATGCTGGAGAAGCAGAGACGGA cttgattctggtgaagactgttgtctgggcctgcccttctcctcccacagATTAAGGAACTTCAACAGGCATTGACAGTTAAGCAAAATGAAGAGTTGGACCGACAGAAGAGAATAGGTAACACATGCAAGATGATAGAGGATCTTCAAAGTGAGCTCAAAACTGCAGAGAATTGTGAGAACCCTCAGCCTCAGATTGATACAATCACAAATGATCAAAGGCAAGTACAGGAGGTCAAGGCCCTATGTGAAGGTGAGATTCTTGACAAACAGAGAGAGAAGGAAATGCTTGAAATACACAGGCGTAgtgaggttgaggtgaagcgatcagacacagttggggactgggccatcttt Alignment from Exonerate_coding2genome ATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCGTCACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGATAAACAGCGAGAAAAGGAAATGCTGGAGAAGCAGAGACGGA cttgattctggtgaagactgttgtctgggcctgcccttctcctcccacagATTAAGGAACTTCAACAGGCATTGACAGTTAAGCAAAATGAAGAGTTGGACCGACAGAAGAGAATAGGTAACACATGCAAGATGATAGAGGATCTTCAAAGTGAGCTCAAAACTGCAGAGAATTGTGAGAACCCTCAGCCTCAGATTGATACAATCACAAATGATCAAAGGCAAGTACAGGAGGTCAAGGCCCTATGTGAAGGTGAGATTCTTGACAAACAGAGAGAGAAGGAAATGCTTGAAATACACAGGCGTAgtgaggttgaggtgaagcgatcagacacagttggggactgggccatcttt Alignment from GeneWise ATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCGTCACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGATAAACAGCGAGAAAAGGAAATGCTGGAGAAGCAGAGACGGA cttgattctggtgaagactgttgtctgggcctgcccttctcctcccacagATTAAGGAACTTCAACAGGCATTGACAGTTAAGCAAAATGAAGAGTTGGACCGACAGAAGAGAATAGGTAACACATGCAAGATGATAGAGGATCTTCAAAGTGAGCTCAAAACTGCAGAGAATTGTGAGAACCCTCAGCCTCAGATTGATACAATCACAAATGATCAAAGGCAAGTACAGGAGGTCAAGGCCCTATGTGAAGGTGAGATTCTTGACAAACAGAGAGAGAAGGAAATGCTTGAAATACACAGGCGTAgtgaggttgaggtgaagcgatcagacacagttggggactgggccatcttt #### Smc5_ID5130_4 --> 1 - 0 Original Alignment gTTCAGGACTTCTGGAAATCTTATAATCACCCGCGAGATTGATGTGATAAAAAATCAGTCCTTTTGGTTCATCAACAAAAAGCCTGTAACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCTTAAACATCCAAGTGGGCAATCTGTGCCAGTTCTTGCCTCAG ttattgttgtttagcacagaaccaggaggtctccctcccctgcctgtcagaTTCAGGACTTCTGGAAATCTGATGATCACCCGTGAGATCGATGGGATAACCAATCATTCAATTTGGTTCATTAACAAAAAACCAGTTACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCCTCAACATCCAGGTTGGTAATCTGTGCCAGTTCTTGCCTCAAgtgggggcccgatcagtgaacacagggcattaccatgctgttgcatacag Alignment from CESAR gTTCAGGACTTCTGGAAATCTTATAATCACCCGCGAGATTGATGTGATAAAAAATCAGTCCTTTTGGTTCATCAACAAAAAGCCTGTAACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCTTAAACATCCAAGTGGGCAATCTGTGCCAGTTCTTGCCTCAG ttattgttgtttagcacagaaccaggaggtctccctcccctgcctgtcagaTTCAGGACTTCTGGAAATCTGATGATCACCCGTGAGATCGATGGGATAACCAATCATTCAATTTGGTTCATTAACAAAAAACCAGTTACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCCTCAACATCCAGGTTGGTAATCTGTGCCAGTTCTTGCCTCAAgtgggggcccgatcagtgaacacagggcattaccatgctgttgcatacag Alignment from Spaln_aa2Genome GTTCAGGACTTCTGGAAATCTTATAATCACCCGCGAGATTGATGTGATAAAAAATCAGTCCTTTTGGTTCATCAACAAAAAGCCTGTAACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCTTAAACATCCAAGTGGGCAATCTGTGCCAGTTCTTGCCTCAG ttattgttgtttagcacagaaccaggaggtctccctcccctgcctgtcagATTCAGGACTTCTGGAAATCTGATGATCACCCGTGAGATCGATGGGATAACCAATCATTCAATTTGGTTCATTAACAAAAAACCAGTTACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCCTCAACATCCAGGTTGGTAATCTGTGCCAGTTCTTGCCTCAAgtgggggcccgatcagtgaacacagggcattaccatgctgttgcatacag Alignment from Spaln_nt2Genome GTTCAGGACTTCTGGAAATCTTATAATCACCCGCGAGATTGATGTGATAAAAAATCAGTCCTTTTGGTTCATCAACAAAAAGCCTGTAACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCTTAAACATCCAAGTGGGCAATCTGTGCCAGTTCTTGCCTCAG ttattgttgtttagcacagaaccaggaggtctccctcccctgcctgtcagATTCAGGACTTCTGGAAATCTGATGATCACCCGTGAGATCGATGGGATAACCAATCATTCAATTTGGTTCATTAACAAAAAACCAGTTACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCCTCAACATCCAGGTTGGTAATCTGTGCCAGTTCTTGCCTCAAgtgggggcccgatcagtgaacacagggcattaccatgctgttgcatacag Alignment from Pairagon GTTCAGGACTTCTGGAAATCTTATAATCACCCGCGAGATTGATGTGATAAAAAATCAGTCCTTTTGGTTCATCAACAAAAAGCCTGTAACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCTTAAACATCCAAGTGGGCAATCTGTGCCAGTTCTTGCCTCAG ttattgttgtttagcacagaaccaggaggtctccctcccctgcctgtcagATTCAGGACTTCTGGAAATCTGATGATCACCCGTGAGATCGATGGGATAACCAATCATTCAATTTGGTTCATTAACAAAAAACCAGTTACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCCTCAACATCCAGGTTGGTAATCTGTGCCAGTTCTTGCCTCAAgtgggggcccgatcagtgaacacagggcattaccatgctgttgcatacag Alignment from Exonerate_protein2genome GTTCAGGACTTCTGGAAATCTTATAATCACCCGCGAGATTGATGTGATAAAAAATCAGTCCTTTTGGTTCATCAACAAAAAGCCTGTAACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCTTAAACATCCAAGTGGGCAATCTGTGCCAGTTCTTGCCTCAG ttattgttgtttagcacagaaccaggaggtctccctcccctgcctgtcagATTCAGGACTTCTGGAAATCTGATGATCACCCGTGAGATCGATGGGATAACCAATCATTCAATTTGGTTCATTAACAAAAAACCAGTTACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCCTCAACATCCAGGTTGGTAATCTGTGCCAGTTCTTGCCTCAAgtgggggcccgatcagtgaacacagggcattaccatgctgttgcatacag Alignment from Exonerate_coding2genome GTTCAGGACTTCTGGAAATCTTATAATCACCCGCGAGATTGATGTGATAAAAAATCAGTCCTTTTGGTTCATCAACAAAAAGCCTGTAACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCTTAAACATCCAAGTGGGCAATCTGTGCCAGTTCTTGCCTCAG ttattgttgtttagcacagaaccaggaggtctccctcccctgcctgtcagATTCAGGACTTCTGGAAATCTGATGATCACCCGTGAGATCGATGGGATAACCAATCATTCAATTTGGTTCATTAACAAAAAACCAGTTACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCCTCAACATCCAGGTTGGTAATCTGTGCCAGTTCTTGCCTCAAgtgggggcccgatcagtgaacacagggcattaccatgctgttgcatacag Alignment from GeneWise GTTCAGGACTTCTGGAAATCTTATAATCACCCGCGAGATTGATGTGATAAAAAATCAGTCCTTTTGGTTCATCAACAAAAAGCCTGTAACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCTTAAACATCCAAGTGGGCAATCTGTGCCAGTTCTTGCCTCAG ttattgttgtttagcacagaaccaggaggtctccctcccctgcctgtcagATTCAGGACTTCTGGAAATCTGATGATCACCCGTGAGATCGATGGGATAACCAATCATTCAATTTGGTTCATTAACAAAAAACCAGTTACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCCTCAACATCCAGGTTGGTAATCTGTGCCAGTTCTTGCCTCAAgtgggggcccgatcagtgaacacagggcattaccatgctgttgcatacag #### Snx32_ID1066_12 --> 2 - 0 Original Alignment agCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG tacctcctgaaggattgcaacaatcaattcttttttccaatttgcttcagaaCTCATGGACTTCAAATCTCACAGGGTCTCCTCTTTCCGTAAGAACCTCATTGAGTTGACTGAGCTGGAGCTCAAGCAGGCCAAGgtaagttgttactccagttacatcaaaaagaactcaatctgctcattgtt Alignment from CESAR agCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG tactgcctgaaggattgcaacaatcaattcttttttccaatttgcttcagaaCTCATGGACTTCAAATCTCACAGGGTCTCCTCTTTCCGTAAGAACCTCATTGAGTTGACTGAGCTGGAGCTCAAGCAGGCCAAGgtaagttgttactccagttacatcaaaaagaactcaatctgctcattgtt Alignment from Spaln_aa2Genome AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG tacctcctgaaggattgcaacaatcaattcttttttccaatttgcttcagAACTCATGGACTTCAAATCTCACAGGGTCTCCTCTTTCCGTAAGAACCTCATTGAGTTGACTGAGCTGGAGCTCAAGCAGGCCAAGgtaagttgttactccagttacatcaaaaagaactcaatctgctcattgtt Alignment from Spaln_nt2Genome AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG tacctcctgaaggattgcaacaatcaattcttttttccaatttgcttcagAACTCATGGACTTCAAATCTCACAGGGTCTCCTCTTTCCGTAAGAACCTCATTGAGTTGACTGAGCTGGAGCTCAAGCAGGCCAAGgtaagttgttactccagttacatcaaaaagaactcaatctgctcattgtt Alignment from Pairagon AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG tacctcctgaaggattgcaacaatcaattcttttttccaatttgcttcagAACTCATGGACTTCAAATCTCACAGGGTCTCCTCTTTCCGTAAGAACCTCATTGAGTTGACTGAGCTGGAGCTCAAGCAGGCCAAGgtaagttgttactccagttacatcaaaaagaactcaatctgctcattgtt Alignment from Exonerate_protein2genome AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG tacctcctgaaggattgcaacaatcaattcttttttccaatttgcttcagAACTCATGGACTTCAAATCTCACAGGGTCTCCTCTTTCCGTAAGAACCTCATTGAGTTGACTGAGCTGGAGCTCAAGCAGGCCAAGgtaagttgttactccagttacatcaaaaagaactcaatctgctcattgtt Alignment from Exonerate_coding2genome AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG tacctcctgaaggattgcaacaatcaattcttttttccaatttgcttcagAACTCATGGACTTCAAATCTCACAGGGTCTCCTCTTTCCGTAAGAACCTCATTGAGTTGACTGAGCTGGAGCTCAAGCAGGCCAAGgtaagttgttactccagttacatcaaaaagaactcaatctgctcattgtt Alignment from GeneWise AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAGGCCAGC---------ACCCTGCTTCTCCAGAACACCCTTGTTGCCCTTAA tacctcctgaaggattgcaacaatcaattcttttttccaatttgcttcagAACTCATGGACTTCAAATCTCACAGGGTCTCCTCTTTCCGTAAGAACCTCATTGAGTTGACTGAGCTGGAGCTCAAGCAGGCCAAGGTAAGTTGTTACTCCAGTTACATCAAAAAGAACTCAATCTGCTCATTGTT #### Snx32_ID1067_11 --> 0 - 1 Original Alignment GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAg acacttctgttatctattacataaatgcccctgatgatcaaattccccagGATCTATTGTACTGCCGCCTCCGGGCACTAGCTGAGTATGAGAATGCTAACAAAGCTCTTGATAAAGCCCGGACAAGGAACCATGAAGTATGGCCAGCAGAGAGCCACCAGCAACTGTGTTGCCAGCAACAGTTTGACTGCCTCTCGGACTCTACCAAACAAggtactgcctgaaggattgcaacaatcaatgttgtttttcttttcctttta Alignment from CESAR GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAG---CGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAg acacttctgttatctattacataaatgcccctgatgatcaaattccccagGATCTATTGTACTGCCGCCTCCGGGCACTAGCTGAGTATGAGAATGCTAACAAAGCTCTTGATAAAGCCCGGACAAGGAACCATGAAGTATGGCCAGCAGAGAGCCACCAGCAACTGTGTTGCCAGCAACAGTTTGACTGCCTCTCGGACTCTACCAAACAAggtactgcctgaaggattgcaacaatcaattcttttttccaatttgcttca Alignment from Spaln_aa2Genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG acacttctgttatctattacataaatgcccctgatgatcaaattccccagGATCTATTGTACTGCCGCCTCCGGGCACTAGCTGAGTATGAGAATGCTAACAAAGCTCTTGATAAAGCCCGGACAAGGAACCATGAAGTATGGCCAGCAGAGAGCCACCAGCAACTGTGTTGCCAGCAACAGTTTGACTGCCTCTCGGACTCTACCAAACAAGgtactgcctgaaggattgcaacaatcaatgttgtttttcttttcctttta Alignment from Spaln_nt2Genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGC---TTCGAGCGCCTCTCTGACTCCGCCAAACAAG acacttctgttatctattacataaatgcccctgatgatcaaattccccagGATCTATTGTACTGCCGCCTCCGGGCACTAGCTGAGTATGAGAATGCTAACAAAGCTCTTGATAAAGCCCGGACAAGGAACCATGAAGTATGGCCAGCAGAGAGCCACCAGCAACTGTGTTGCCAGCAACAGTTTGACTGCCTCTCGGACTCTACCAAACAAGgtactgcctgaaggattgcaacaatcaatgttgtttttcttttcctttta Alignment from Pairagon GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAG---CGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG acacttctgttatctattacataaatgcccctgatgatcaaattccccagGATCTATTGTACTGCCGCCTCCGGGCACTAGCTGAGTATGAGAATGCTAACAAAGCTCTTGATAAAGCCCGGACAAGGAACCATGAAGTATGGCCAGCAGAGAGCCACCAGCAACTGTGTTGCCAGCAACAGTTTGACTGCCTCTCGGACTCTACCAAACAAGgtactgcctgaaggattgcaacaatcaatgttgtttttcttttcctttta Alignment from Exonerate_protein2genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG acacttctgttatctattacataaatgcccctgatgatcaaattccccagGATCTATTGTACTGCCGCCTCCGGGCACTAGCTGAGTATGAGAATGCTAACAAAGCTCTTGATAAAGCCCGGACAAGGAACCATGAAGTATGGCCAGCAGAGAGCCACCAGCAACTGTGTTGCCAGCAACAGTTTGACTGCCTCTCGGACTCTACCAAACAAGgtactgcctgaaggattgcaacaatcaatgttgtttttcttttcctttta Alignment from Exonerate_coding2genome acacttctgttatctattacataaatgcccctgatgatcaaattccccaggatctattgtactgccgcctccgggcactagctgagtatgagaatgctaacaaagctcttgataaagcccggacaaggaaccatgaagtatggccagcagagagccaccagcaactgtgttgccagcaacagtttgactgcctctcggactctaccaaacaaggtactgcctgaaggattgcaacaatcaatgttgtttttcttttcctttta Alignment from GeneWise GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGC---TTCGAGCGCCTCTCTGACTCCGCCAAACAAG acacttctgttatctattacataaatgcccctgatgatcaaattccccagGATCTATTGTACTGCCGCCTCCGGGCACTAGCTGAGTATGAGAATGCTAACAAAGCTCTTGATAAAGCCCGGACAAGGAACCATGAAGTATGGCCAGCAGAGAGCCACCAGCAACTGTGTTGCCAGCAACAGTTTGACTGCCTCTCGGACTCTACCAAACAAGgtactgcctgaaggattgcaacaatcaatgttgtttttcttttcctttta #### Snx32_ID1070_8 --> 2 - 2 Original Alignment gcCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGag atgtgcacataccttgaattgcaattgccttgtgttcctccttactataggcCTGGCAGACAATTATATTCCCATTTCAGCT---GTGAGCAGTCTTGGAACCCAGGAAGTGAACCAACTTAAAaggtaagtgtcatgcgatgttgctttgctcacccatgtaccattatcggggt Alignment from CESAR gcCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGag atgtgcacataccttgaattgcaattgccttgtgttcctccttactataggcCTGGCAGACAATTATATTCCCATTTCAGCTGTG---AGCAGTCTTGGAACCCAGGAAGTGAACCAACTTAAAaggtaagtgtcatgcgatgttgctttgctcacccatgtaccattatcggggt Alignment from Spaln_aa2Genome GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG atgtgcacataccttgaattgcaattgccttgtgttcctccttactatagGCCTGGCAGACAATTATATTCCCATTTCA---GCTGTGAGCAGTCTTGGAACCCAGGAAGTGAACCAACTTAAAAGgtaagtgtcatgcgatgttgctttgctcacccatgtaccattatcggggt Alignment from Spaln_nt2Genome GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG atgtgcacataccttgaattgcaattgccttgtgttcctccttactatagGCCTGGCAGACAATTATATTCCCATTTCAGCTG---TGAGCAGTCTTGGAACCCAGGAAGTGAACCAACTTAAAAGgtaagtgtcatgcgatgttgctttgctcacccatgtaccattatcggggt Alignment from Pairagon GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG atgtgcacataccttgaattgcaattgccttgtgttcctccttactatagGCCTGGCAGACAATTATATTCCCATTTCAGCTG---TGAGCAGTCTTGGAACCCAGGAAGTGAACCAACTTAAAAGgtaagtgtcatgcgatgttgctttgctcacccatgtaccattatcggggt Alignment from Exonerate_protein2genome GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG atgtgcacataccttgaattgcaattgccttgtgttcctccttactatagGCCTGGCAGACAATTATATTCCCATTTCA---GCTGTGAGCAGTCTTGGAACCCAGGAAGTGAACCAACTTAAAAGgtaagtgtcatgcgatgttgctttgctcacccatgtaccattatcggggt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG atgtgcacataccttgaattgcaattgccttgtgttcctccttactatagGCCTGGCAGACAATTATATTCCCATTTCAGCT---GTGAGCAGTCTTGGAACCCAGGAAGTGAACCAACTTAAAAGgtaagtgtcatgcgatgttgctttgctcacccatgtaccattatcggggt #### Snx32_ID1072_6 --> 0 - 0 Original Alignment CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacattattaagattatccaagtctcttatttgccctgggtcccacagCTGAGTGTCCAAGAGAAGAACAGAAAGGAGGTTTCTGGGGGGCTCCTACGAGGT---GTTAGGTATGCAGATGAAATCATCATCACTGGTGGCATTTCAGGGCTCAAAgtacctatggcttctgttgtggtgggaggatcatgccagatagtgctgcc Alignment from CESAR CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacattattaagattatccaagtctcttatttgccctgggtcccacagCTGAGTGTCCAAGAGAAGAACAGAAAGGAGGTTTCTGGGGGGCTCCTACGAGGT---GTTAGGTATGCAGATGAAATCATCATCACTGGTGGCATTTCAGGGCTCAAAgtacctatggcttctgttgtggtgggaggatcatgccagatagtgctgcc Alignment from Spaln_aa2Genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACCGGCATATCAGGGCTCAAG acaacattattaagattatccaagtctcttatttgccctgggtcccacagCTGAGTGTCCAAGAGAAGAACAGAAAGGAGGTTTCTGGGGGGCTCCTACGAGGTGTTAGGTATGCAGATGAAATCATCATCACTGGTGGCATTTCAGGGCTCAAAgtacctatggcttctgttgtggtgggaggatcatgccagatagtgctgcc Alignment from Spaln_nt2Genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACCGG---CATATCAGGGCTCAAG acaacattattaagattatccaagtctcttatttgccctgggtcccacagCTGAGTGTCCAAGAGAAGAACAGAAAGGAGGTTTCTGGGGGGCTCCT-ACGAG--GTGTTAGGTATGCAGATGAAATCATCATCACTGGTGGCATTTCAGGGCTCAAAgtacctatggcttctgttgtggtgggaggatcatgccagatagtgctgcc Alignment from Pairagon CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCT--GAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCAC---CGGCATATCAGGGCTCAAG acaacattattaagattatccaagtctcttatttgccctgggtcccacagCTGAGTGTCCAAGAGAAGAACAGAAAGGAGGTTTCTGGGGGGCTCCTACGAGG-----TGTTAGGTATGCAGATGAAATCATCATCACTGGTGGCATTTCAGGGCTCAAAgtacctatggcttctgttgtggtgggaggatcatgccagatagtgctgcc Alignment from Exonerate_protein2genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacattattaagattatccaagtctcttatttgccctgggtcccacagCTGAGTGTCCAAGAGAAGAACAGAAAGGAGGTTTCTGGGGGGCTCCTACGAGGT---GTTAGGTATGCAGATGAAATCATCATCACTGGTGGCATTTCAGGGCTCAAAgtacctatggcttctgttgtggtgggaggatcatgccagatagtgctgcc Alignment from Exonerate_coding2genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacattattaagattatccaagtctcttatttgccctgggtcccacagCTGAGTGTCCAAGAGAAGAACAGAAAGGAGGTTTCTGGGGGGCTCCTACGAGGT---GTTAGGTATGCAGATGAAATCATCATCACTGGTGGCATTTCAGGGCTCAAAgtacctatggcttctgttgtggtgggaggatcatgccagatagtgctgcc Alignment from GeneWise CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACCGGC---ATATCAGGGCTCAAG acaacattattaagattatccaagtctcttatttgccctgggtcccacagCTGAGTGTCCAAGAGAAGAACAGAAAGGAGGTTTCTGGGGGGCTCCTACGAGGT---GTTAGGTATGCAGATGAAATCATCATCACTGGTGGCATTTCAGGGCTCAAAgtacctatggcttctgttgtggtgggaggatcatgccagatagtgctgcc #### Sorbs1_ID7900_22 --> 0 - 0 Original Alignment GGGGAGAGGATCACGCTGCTCCGACAGGTGGATGAGAACTGGTACGAAGGGAGGATTCCTGGGACATCTCGCCAAGGCATTTTCCCTATCACCTATGTAGATGTGCTTAAGAGGCCATTGGTGAAAACCCCTGTGGATTACATCGACCTGCCTTATTCTTCTTCCCCAAGTCGCAGTGCCACTGTGAGCCCACAG acaaatgttttggagctactggaacacatgagaaggttctactcttgcagGGTGAGAGGATCACACTCTTACAGCGAGTAGATGAGAATTGGTATGAAGGGCAGATTACTGGGACACCCCGACAAGGTATTTTCCCCATAACCTATGTAGATGTTCTAAAGAGGCCATTGGTGAAAACCCCTGTGGATTACATTGAACTGACCTATTCTTGCTCTCCAAGC---AGTGCTACTGTGAGCCCACAGgtcagtctaatacagggacctagcctgcagtgtccatgccttggctctgt Alignment from CESAR GGGGAGAGGATCACGCTGCTCCGACAGGTGGATGAGAACTGGTACGAAGGGAGGATTCCTGGGACATCTCGCCAAGGCATTTTCCCTATCACCTATGTAGATGTGCTTAAGAGGCCATTGGTGAAAACCCCTGTGGATTACATCGACCTGCCTTATTCTTCTTCCCCAAGTCGCAGTGCCACTGTGAGCCCACAG acaaatgttttggagctactggaacacatgagaaggttctactcttgcagGGTGAGAGGATCACACTCTTACAGCGAGTAGATGAGAATTGGTATGAAGGGCAGATTACTGGGACACCCCGACAAGGTATTTTCCCCATAACCTATGTAGATGTTCTAAAGAGGCCATTGGTGAAAACCCCTGTGGATTACATTGAACTGACCTATTCTTGCTCTCCAAGC---AGTGCTACTGTGAGCCCACAGgtcagtctaatacagggacctagcctgcagtgtccatgccttggctctgt Alignment from Spaln_aa2Genome GGGGAGAGGATCACGCTGCTCCGACAGGTGGATGAGAACTGGTACGAAGGGAGGATTCCTGGGACATCTCGCCAAGGCATTTTCCCTATCACCTATGTAGATGTGCTTAAGAGGCCATTGGTGAAAACCCCTGTGGATTACATCGACCTGCCTTATTCTTCTTCCCCAAGTCGCAGTGCCACTGTGAGCCCACAG acaaatgttttggagctactggaacacatgagaaggttctactcttgcagGGTGAGAGGATCACACTCTTACAGCGAGTAGATGAGAATTGGTATGAAGGGCAGATTACTGGGACACCCCGACAAGGTATTTTCCCCATAACCTATGTAGATGTTCTAAAGAGGCCATTGGTGAAAACCCCTGTGGATTACATTGAACTGACCTATTCTTGCTCTCCAAGC---AGTGCTACTGTGAGCCCACAGgtcagtctaatacagggacctagcctgcagtgtccatgccttggctctgt Alignment from Spaln_nt2Genome GGGGAGAGGATCACGCTGCTCCGACAGGTGGATGAGAACTGGTACGAAGGGAGGATTCCTGGGACATCTCGCCAAGGCATTTTCCCTATCACCTATGTAGATGTGCTTAAGAGGCCATTGGTGAAAACCCCTGTGGATTACATCGACCTGCCTTATTCTTCTTCCCCAAGTCGCAGTGCCACTGTGAGCCCACAG acaaatgttttggagctactggaacacatgagaaggttctactcttgcagGGTGAGAGGATCACACTCTTACAGCGAGTAGATGAGAATTGGTATGAAGGGCAGATTACTGGGACACCCCGACAAGGTATTTTCCCCATAACCTATGTAGATGTTCTAAAGAGGCCATTGGTGAAAACCCCTGTGGATTACATTGAACTGACCTATTCTTGCTCTCCAA---GCAGTGCTACTGTGAGCCCACAGgtcagtctaatacagggacctagcctgcagtgtccatgccttggctctgt Alignment from Pairagon GGGGAGAGGATCACGCTGCTCCGACAGGTGGATGAGAACTGGTACGAAGGGAGGATTCCTGGGACATCTCGCCAAGGCATTTTCCCTATCACCTATGTAGATGTGCTTAAGAGGCCATTGGTGAAAACCCCTGTGGATTACATCGACCTGCCTTATTCTTCTTCCCCAAGTCGCAGTGCCACTGTGAGCCCACAG acaaatgttttggagctactggaacacatgagaaggttctactcttgcagGGTGAGAGGATCACACTCTTACAGCGAGTAGATGAGAATTGGTATGAAGGGCAGATTACTGGGACACCCCGACAAGGTATTTTCCCCATAACCTATGTAGATGTTCTAAAGAGGCCATTGGTGAAAACCCCTGTGGATTACATTGAACTGACCTATTCTTGCTCTCCAA---GCAGTGCTACTGTGAGCCCACAGgtcagtctaatacagggacctagcctgcagtgtccatgccttggctctgt Alignment from Exonerate_protein2genome GGGGAGAGGATCACGCTGCTCCGACAGGTGGATGAGAACTGGTACGAAGGGAGGATTCCTGGGACATCTCGCCAAGGCATTTTCCCTATCACCTATGTAGATGTGCTTAAGAGGCCATTGGTGAAAACCCCTGTGGATTACATCGACCTGCCTTATTCTTCTTCCCCAAGTCGCAGTGCCACTGTGAGCCCACAG acaaatgttttggagctactggaacacatgagaaggttctactcttgcagGGTGAGAGGATCACACTCTTACAGCGAGTAGATGAGAATTGGTATGAAGGGCAGATTACTGGGACACCCCGACAAGGTATTTTCCCCATAACCTATGTAGATGTTCTAAAGAGGCCATTGGTGAAAACCCCTGTGGATTACATTGAACTGACCTATTCTTGCTCTCCAAGC---AGTGCTACTGTGAGCCCACAGgtcagtctaatacagggacctagcctgcagtgtccatgccttggctctgt Alignment from Exonerate_coding2genome GGGGAGAGGATCACGCTGCTCCGACAGGTGGATGAGAACTGGTACGAAGGGAGGATTCCTGGGACATCTCGCCAAGGCATTTTCCCTATCACCTATGTAGATGTGCTTAAGAGGCCATTGGTGAAAACCCCTGTGGATTACATCGACCTGCCTTATTCTTCTTCCCCAAGTCGCAGTGCCACTGTGAGCCCACAG acaaatgttttggagctactggaacacatgagaaggttctactcttgcagGGTGAGAGGATCACACTCTTACAGCGAGTAGATGAGAATTGGTATGAAGGGCAGATTACTGGGACACCCCGACAAGGTATTTTCCCCATAACCTATGTAGATGTTCTAAAGAGGCCATTGGTGAAAACCCCTGTGGATTACATTGAACTGACCTATTCTTGCTCTCCAAGC---AGTGCTACTGTGAGCCCACAGgtcagtctaatacagggacctagcctgcagtgtccatgccttggctctgt Alignment from GeneWise GGGGAGAGGATCACGCTGCTCCGACAGGTGGATGAGAACTGGTACGAAGGGAGGATTCCTGGGACATCTCGCCAAGGCATTTTCCCTATCACCTATGTAGATGTGCTTAAGAGGCCATTGGTGAAAACCCCTGTGGATTACATCGACCTGCCTTATTCTTCTTCCCCAAGTCGCAGTGCCACTGTGAGCCCACAG acaaatgttttggagctactggaacacatgagaaggttctactcttgcagGGTGAGAGGATCACACTCTTACAGCGAGTAGATGAGAATTGGTATGAAGGGCAGATTACTGGGACACCCCGACAAGGTATTTTCCCCATAACCTATGTAGATGTTCTAAAGAGGCCATTGGTGAAAACCCCTGTGGATTACATTGAACTGACCTATTCTTGCTCTCCAAGC---AGTGCTACTGTGAGCCCACAGgtcagtctaatacagggacctagcctgcagtgtccatgccttggctctgt #### Sorbs1_ID7906_17 --> 2 - 0 Original Alignment atTCAGAGTCACCAAGACATTTTATACCAGCTGATTACTTGGAGTCCACAGAAGAATTTATTCGGAGACGGCACGATGATAAAGAG gatccaattggctttctctgatcttatcttattctcaattgcttttgtagacTCTGAGTCACCCAGACATTTTATACCAGCTGATTATTCAGAGTCTACAGAAGAGTTCATCCGGAGACGACATGAGGATAAAGAGgtacagccctggagcaccagtgttactaatttgcagtttgtcaatcacaa Alignment from CESAR atTCAGAGTCACCAAGACATTTTATACCAGCTGATTACTTGGAGTCCACAGAAGAATTTATTCGGAGACGGCACGATGATAAAGAG gatccaattggctttctctgatcttatcttattctcaattgcttttgtagacTCTGAGTCACCCAGACATTTTATACCAGCTGATTATTCAGAGTCTACAGAAGAGTTCATCCGGAGACGACATGAGGATAAAGAGgtacagccctggagcaccagtgttactaatttgcagtttgtcaatcacaa Alignment from Spaln_aa2Genome ATTCAGAGTCACCAAGACATTTTATACCAGCTGATTACTTGGAGTCCACAGAAGAATTTATTCGGAGACGGCACGATGATAAAGAG gatccaattggctttctctgatcttatcttattctcaattgcttttgtagACTCTGAGTCACCCAGACATTTTATACCAGCTGATTATTCAGAGTCTACAGAAGAGTTCATCCGGAGACGACATGAGGATAAAGAGgtacagccctggagcaccagtgttactaatttgcagtttgtcaatcacaa Alignment from Spaln_nt2Genome ATTCAGAGTCACCAAGACATTTTATACCAGCTGATTACTTGGAGTCCACAGAAGAATTTATTCGGAGACGGCACGATGATAAAGAG gatccaattggctttctctgatcttatcttattctcaattgcttttgtagACTCTGAGTCACCCAGACATTTTATACCAGCTGATTATTCAGAGTCTACAGAAGAGTTCATCCGGAGACGACATGAGGATAAAGAGgtacagccctggagcaccagtgttactaatttgcagtttgtcaatcacaa Alignment from Pairagon ATTCAGAGTCACCAAGACATTTTATACCAGCTGATTACTTGGAGTCCACAGAAGAATTTATTCGGAGACGGCACGATGATAAAGAG gatccaattggctttctctgatcttatcttattctcaattgcttttgtagACTCTGAGTCACCCAGACATTTTATACCAGCTGATTATTCAGAGTCTACAGAAGAGTTCATCCGGAGACGACATGAGGATAAAGAGgtacagccctggagcaccagtgttactaatttgcagtttgtcaatcacaa Alignment from Exonerate_protein2genome ATTCAGAGTCACCAAGACATTTTATACCAGCTGATTACTTGGAGTCCACAGAAGAATTTATTCGGAGACGGCACGATGATAAAGAG gatccaattggctttctctgatcttatcttattctcaattgcttttgtagACTCTGAGTCACCCAGACATTTTATACCAGCTGATTATTCAGAGTCTACAGAAGAGTTCATCCGGAGACGACATGAGGATAAAGAGgtacagccctggagcaccagtgttactaatttgcagtttgtcaatcacaa Alignment from Exonerate_coding2genome ATTCAGAGTCACCAAGACATTTTATACCAGCTGATTACTTGGAGTCCACAGAAGAATTTATTCGGAGACGGCACGATGATAAAGAG gatccaattggctttctctgatcttatcttattctcaattgcttttgtagACTCTGAGTCACCCAGACATTTTATACCAGCTGATTATTCAGAGTCTACAGAAGAGTTCATCCGGAGACGACATGAGGATAAAGAGgtacagccctggagcaccagtgttactaatttgcagtttgtcaatcacaa Alignment from GeneWise ATTCAGAGTCACCAAGACATTTTATACCAGCTGATTACTTGGAGTCCACAGAAGAATTTATTCGGAGACGGCACGATGATAAAGAG gatccaattggctttctctgatcttatcttattctcaattgcttttgtagACTCTGAGTCACCCAGACATTTTATACCAGCTGATTATTCAGAGTCTACAGAAGAGTTCATCCGGAGACGACATGAGGATAAAGAGgtacagccctggagcaccagtgttactaatttgcagtttgtcaatcacaa #### Sorbs1_ID7911_15 --> 1 - 1 Original Alignment tATCTATTCTTCCAACTTCCATGCAGTGAAGAGAGAATCGGACGGGACCCCCGGGGGTCTCGCTAGCTTGGAGAATGAGAGGCAGATCTATAAGAGTGTCTTGGAAGGTGGCGACATCCCTCTT------CAGGGCCTCAGTGGGCTCAAGCGACCTTCCAGCTCAGCTTCCACTAAAg ttctatttgtcttccttgtccatcccttgtccctcccccttggcgcccagtATTTATTCTCCCACTTTCCATGCAGTA------GAT------GGGATGGCTGGGGGTTTAGCTAGCTTGGAAAATGAGCGACAGATCCACAAGAGTGTCCTAGAGGGCGGTGATATCCCCCTACCTTTCCAAGGCCTTAGTGGGCTCAGGAGACCTTCTAGCTCT---TCCACTAAAggtaagtagggtggaaagttctctgtagacacttattacatctgtggtgca Alignment from CESAR tATCTATTCTTCCAACTTCCATGCAGTGAAGAGAGAATCGGACGGGACCCCCGGGGGTCTCGCTAGCTTGGAGAATGAGAGGCAGATCTATAAGAGTGTCTTGGAAGGTGGCGACATCCCTCTT------CAGGGCCTCAGTGGGCTCAAGCGACCTTCCAGCTCAGCTTCCACTAAAg ttctatttgtcttccttgtccatcccttgtccctcccccttggcgcccagtATTTATTCTCCCACTTTCCATGCAGTA------------GATGGGATGGCTGGGGGTTTAGCTAGCTTGGAAAATGAGCGACAGATCCACAAGAGTGTCCTAGAGGGCGGTGATATCCCCCTACCTTTCCAAGGCCTTAGTGGGCTCAGGAGACCTTCTAGCTCT---TCCACTAAAggtaagtagggtggaaagttctctgtagacacttattacatctgtggtgca Alignment from Spaln_aa2Genome TATCTATTCTTCCAACTTCCATGCAGTGAAGAGAGAATCGGACGGGACCCCCGGGGGTCTCGCTAGCTTGGAGAATGAGAGGCAGATCTATAAGAGTGTCTTGGAAGGTGGCGACATCCCTCTT------CAGGGCCTCAGTGGGCTCAAGCGACCTTCCAGCTCAGCTTCCACTAAAG ttctatttgtcttccttgtccatcccttgtccctcccccttggcgcccagTATTTATTCTCCCACTTTCCATGCAGTA------------GATGGGATGGCTGGGGGTTTAGCTAGCTTGGAAAATGAGCGACAGATCCACAAGAGTGTCCTAGAGGGCGGTGATATCCCCCTACCTTTCCAAGGCCTTAGTGGGCTCAGGAGACCTTCTAGCTCT---TCCACTAAAGgtaagtagggtggaaagttctctgtagacacttattacatctgtggtgca Alignment from Spaln_nt2Genome TATCTATTCTTCCAACTTCCATGCAGTGAAGAGAGAATCGGACGGGACCCCCGGGGGTCTCGCTAGCTTGGAGAATGAGAGGCAGATCTATAAGAGTGTCTTGGAAGGTGGCGACATCCCTCTTC------AGGGCCTCAGTGGGCTCAAGCGACCTTCCAGCTCAGCTTCCACTAAAG ttctatttgtcttccttgtccatcccttgtccctcccccttggcgcccagTATTTATTCTCCCACTTTCCATGCAGT------------AGATGGGATGGCTGGGGGTTTAGCTAGCTTGGAAAATGAGCGACAGATCCACAAGAGTGTCCTAGAGGGCGGTGATATCCCCCTACCTTTCCAAGGCCTTAGTGGGCTCAGGAGACCTTCTAGCT---CTTCCACTAAAGgtaagtagggtggaaagttctctgtagacacttattacatctgtggtgca Alignment from Pairagon TATCTATTCTTCCAACTTCCATGCAGTGAAGAGAGAATCGGACGGGACCCCCGGGGGTCTCGCTAGCTTGGAGAATGAGAGGCAGATCTATAAGAGTGTCTTGGAAGGTGGCGACATCCCTC------TTCAGGGCCTCAGTGGGCTCAAGCGACCTTCCAGCTCAGCTTCCACTAAAG ttctatttgtcttccttgtccatcccttgtccctcccccttggcgcccagTATTTATTCTCCCACTTTCCATGCAGT------------AGATGGGATGGCTGGGGGTTTAGCTAGCTTGGAAAATGAGCGACAGATCCACAAGAGTGTCCTAGAGGGCGGTGATATCCCCCTACCTTTCCAAGGCCTTAGTGGGCTCAGGAGACCTTCTAGCT---CTTCCACTAAAGgtaagtagggtggaaagttctctgtagacacttattacatctgtggtgca Alignment from Exonerate_protein2genome TATCTATTCTTCCAACTTCCATGCAGTGAAGAGAGAATCGGACGGGACCCCCGGGGGTCTCGCTAGCTTGGAGAATGAGAGGCAGATCTATAAGAGTGTCTTGGAAGGTGGCGACATCCCTCTT------CAGGGCCTCAGTGGGCTCAAGCGACCTTCCAGCTCAGCTTCCACTAAAG ttctatttgtcttccttgtccatcccttgtccctcccccttggcgcccagTATTTATTCTCCCACTTTCCATGCAGTA------------GATGGGATGGCTGGGGGTTTAGCTAGCTTGGAAAATGAGCGACAGATCCACAAGAGTGTCCTAGAGGGCGGTGATATCCCCCTACCTTTCCAAGGCCTTAGTGGGCTCAGGAGACCTTCTAGCTCT---TCCACTAAAGgtaagtagggtggaaagttctctgtagacacttattacatctgtggtgca Alignment from Exonerate_coding2genome AGAGCCTCCTGGATATATCTATTCTTCCAACTTCCATGCAGTGAAGAGAGAATCGGACGGGACCCCCGGGGGTCTCGCTAGCTTGGAGAATGAGAGGCAGATCTATAAGAGTGTCTTGGAAGGTGGCGACATCCCTCTT------CAGGGCCTCAGTGGGCTCAAGCGACCTTCCAGCTCAGCTTCCACTAAAG ttctatttgtcttccttgtccatCCCTTGTCCCTCCCCCTTGGCGCCCAGTATTTATTCTCCCACTTTCCATGCAGTAGATGGGATGGCTGGGGGTTTAGCTAGCTTGGAAAATGAGCGACAGATCCACAAGAGTGTCCTAGAGGGCGGTGATATCCCCCTACCTTTCCAAGGCCTTAGTGGGCTCAGGAGACCTTCTAGCTCT---TCCACTAAAGgtaagtagggtggaaagttctctgtagacacttattacatctgtggtgca Alignment from GeneWise TATCTATTCTTCCAACTTCCATGCAGTGAAGAGAGAATCGGACGGGACCCCCGGGGGTCTCGCTAGCTTGGAGAATGAGAGGCAGATCTATAAGAGTGTCTTGGAAGGTGGCGACATCCCTCTT------CAGGGCCTCAGTGGGCTCAAGCGACCTTCCAGCTCAGCTTCCACTAAAG ttctatttgtcttccttgtccatcccttgtccctcccccttggcgcccagTATTTATTCTCCCACTTTCCATGCAGTA------------GATGGGATGGCTGGGGGTTTAGCTAGCTTGGAAAATGAGCGACAGATCCACAAGAGTGTCCTAGAGGGCGGTGATATCCCCCTACCTTTCCAAGGCCTTAGTGGGCTCAGGAGACCTTCTAGCTCT---TCCACTAAAGgtaagtagggtggaaagttctctgtagacacttattacatctgtggtgca #### Sorbs1_ID7933_3 --> 2 - 1 Original Alignment acATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCCTCGTCTTCCTACAGGGGAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTCAg attgtgtttactccaagctgggtctaaattttgaatatgcaccattgtagacATGGACCCCACCAAAATCTGCACTGGAATTGGAACAGTGACTCTTCAGGCCTCATCTTCATACAGGGGAATCCCCAGCAGTAGCCCTGTAAGTCCCCAAGAGTCTCCTAAGCATGATAGAAAGTCAggtaagattttccagtagcgcctaagcgttgtctttacaaccagaagtgac Alignment from CESAR acATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCCTCGTCTTCCTACAGGGGAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTCAg attgtgtttactccaagctgggtctaaattttgaatatgcaccattgtagacATGGACCCCACCAAAATCTGCACTGGAATTGGAACAGTGACTCTTCAGGCCTCATCTTCATACAGGGGAATCCCCAGCAGTAGCCCTGTAAGTCCCCAAGAGTCTCCTAAGCATGATAGAAAGTCAggtaagattttccagtagcgcctaagcgttgtctttacaaccagaagtgac Alignment from Spaln_aa2Genome ACATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCCTCGTCTTCCTACAGGGGAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTCAG attgtgtttactccaagctgggtctaaattttgaatatgcaccattgtagACATGGACCCCACCAAAATCTGCACTGGAATTGGAACAGTGACTCTTCAGGCCTCATCTTCATACAGGGGAATCCCCAGCAGTAGCCCTGTAAGTCCCCAAGAGTCTCCTAAGCATGATAGAAAGTCAGgtaagattttccagtagcgcctaagcgttgtctttacaaccagaagtgac Alignment from Spaln_nt2Genome ACATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCCTCGTCTTCCTACAGGGGAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTCAG attgtgtttactccaagctgggtctaaattttgaatatgcaccattgtagACATGGACCCCACCAAAATCTGCACTGGAATTGGAACAGTGACTCTTCAGGCCTCATCTTCATACAGGGGAATCCCCAGCAGTAGCCCTGTAAGTCCCCAAGAGTCTCCTAAGCATGATAGAAAGTCAGgtaagattttccagtagcgcctaagcgttgtctttacaaccagaagtgac Alignment from Pairagon ACATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCCTCGTCTTCCTACAGGGGAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTCAG attgtgtttactccaagctgggtctaaattttgaatatgcaccattgtagACATGGACCCCACCAAAATCTGCACTGGAATTGGAACAGTGACTCTTCAGGCCTCATCTTCATACAGGGGAATCCCCAGCAGTAGCCCTGTAAGTCCCCAAGAGTCTCCTAAGCATGATAGAAAGTCAGgtaagattttccagtagcgcctaagcgttgtctttacaaccagaagtgac Alignment from Exonerate_protein2genome ACATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCCTCGTCTTCCTACAGGGGAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTCAG attgtgtttactccaagctgggtctaaattttgaatatgcaccattgtagACATGGACCCCACCAAAATCTGCACTGGAATTGGAACAGTGACTCTTCAGGCCTCATCTTCATACAGGGGAATCCCCAGCAGTAGCCCTGTAAGTCCCCAAGAGTCTCCTAAGCATGATAGAAAGTCAGgtaagattttccagtagcgcctaagcgttgtctttacaaccagaagtgac Alignment from Exonerate_coding2genome ACATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCCTCGTCTTCCTACAGGGGAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTCAG attgtgtttactccaagctgggtctaaattttgaatatgcaccattgtagACATGGACCCCACCAAAATCTGCACTGGAATTGGAACAGTGACTCTTCAGGCCTCATCTTCATACAGGGGAATCCCCAGCAGTAGCCCTGTAAGTCCCCAAGAGTCTCCTAAGCATGATAGAAAGTCAGgtaagattttccagtagcgcctaagcgttgtctttacaaccagaagtgac Alignment from GeneWise ACATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCCTCGTCTTCCTACAGGGGAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTCAGGC------CTGGA attgtgtttactccaagctgggtctaaattttgaatatgcaccattgtagACATGGACCCCACCAAAATCTGCACTGGAATTGGAACAGTGACTCTTCAGGCCTCATCTTCATACAGGGGAATCCCCAGCAGTAGCCCTGTAAGTCCCCAAGAGTCTCCTAAGCATGATAGAAAGTCAGGTAAGATTTTCCAgtagcgcctaagcgttgtctttacaaccagaagtgac #### Sorbs1_ID7936_2 --> 2 - 1 Original Alignment aaTGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGACAAAg tctacatgtgtgggtgctaggcctattgtcatttgtgtgtcttatttcaggaTGTGATGTTGGCAGCTCTAAAGCAGTTGTGAAAGGTTTGGTGTCTGGTAATCATGGACCGGAAAAGggtgtgaaagtcagtgaggatcctggtctggcatttagatctgctcctggt Alignment from CESAR aaTGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGACAAAg tctacatgtgtgggtgctaggcctattgtcatttgtgtgtcttatttcaggaTGTGATGTTGGCAGCTCTAAAGCAGTTGTGAAAGGTTTGGTGTCTGGTAATCATGGACCGGAAAAGggtgtgaaagtcagtgaggatcctggtctggcatttagatctgctcctggt Alignment from Spaln_aa2Genome AATGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGACAAAG tctacatgtgtgggtgctaggcctattgtcatttgtgtgtcttatttcagGATGTGATGTTGGCAGCTCTAAAGCAGTTGTGAAAGGTTTGGTGTCTGGTAATCATGGACCGGAAAAGGgtgtgaaagtcagtgaggatcctggtctggcatttagatctgctcctggt Alignment from Spaln_nt2Genome AGTTCTGAATGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGACAAAG tctacatgtgtgggtgctaggcctattgtcatttgtgtgtcttATTTCAGGATGTGATGTTGGCAGCTCTAAAGCAGTTGTGAAAGGTTTGGTGTCTGGTAATCATGGACCGGAAAAGGgtgtgaaagtcagtgaggatcctggtctggcatttagatctgctcctggt Alignment from Pairagon AGTTCTGAATGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGACAAAG tctacatgtgtgggtgctaggcctattgtcatttgtgtgtcttATTTCAGGATGTGATGTTGGCAGCTCTAAAGCAGTTGTGAAAGGTTTGGTGTCTGGTAATCATGGACCGGAAAAGGgtgtgaaagtcagtgaggatcctggtctggcatttagatctgctcctggt Alignment from Exonerate_protein2genome TCTGAATGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGACAAAG tctacatgtgtgggtgctaggcctattgtcatttgtgtgtcttattTCAGGATGTGATGTTGGCAGCTCTAAAGCAGTTGTGAAAGGTTTGGTGTCTGGTAATCATGGACCGGAAAAGGgtgtgaaagtcagtgaggatcctggtctggcatttagatctgctcctggt Alignment from Exonerate_coding2genome TCTGAATGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGACAAAG tctacatgtgtgggtgctaggcctattgtcatttgtgtgtcttattTCAGGATGTGATGTTGGCAGCTCTAAAGCAGTTGTGAAAGGTTTGGTGTCTGGTAATCATGGACCGGAAAAGGgtgtgaaagtcagtgaggatcctggtctggcatttagatctgctcctggt Alignment from GeneWise AGTTCTGAATGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGACAAAG acatgtgtgggtgctaggcctattgtcatttgtgtgtcttatt---TCAGGATGTGATGTTGGCAGCTCTAAAGCAGTTGTGAAAGGTTTGGTGTCTGGTAATCATGGACCGGAAAAGGgtgtgaaagtcagtgaggatcctggtctggcatttagatctgctcctggt #### Sorcs3_ID10544_3 --> 1 - 0 Original Alignment gTCAGTAGATTATGGCGCCACCTATGAAAAACTTAATGACAAAGTGGGTTTGAAGACCGTCCTCAGTTATCTCTATGTCAACCCCACCAACAAAAGGAAG cttcaccagtaggtccttgatctctgccgaaatatccattgctttcacaggTCAGTAGATCATGGTGCCTCCTATGAGAAACTC---AATAAAGTGGGTTTGAAGACTAATATCAGTTACCCGTATGTTAACCCAACCAACAAGTGGAGGgtaagggaggggatcaagaatctctgtactaagtcagatgcaggatctgc Alignment from CESAR gTCAGTAGATTATGGCGCCACCTATGAAAAACTTAATGACAAAGTGGGTTTGAAGACCGTCCTCAGTTATCTCTATGTCAACCCCACCAACAAAAGGAAG cttcaccagtaggtccttgatctctgccgaaatatccattgctttcacaggTCAGTAGATCATGGTGCCTCCTATGAGAAACTCAAT---AAAGTGGGTTTGAAGACTAATATCAGTTACCCGTATGTTAACCCAACCAACAAGTGGAGGgtaagggaggggatcaagaatctctgtactaagtcagatgcaggatctgc Alignment from Spaln_aa2Genome GTCAGTAGATTATGGCGCCACCTATGAAAAACTTAATGACAAAGTGGGTTTGAAGACCGTCCTCAGTTATCTCTATGTCAACCCCACCAACAAAAGGAAG cttcaccagtaggtccttgatctctgccgaaatatccattgctttcacagGTCAGTAGATCATGGTGCCTCCTATGAGAAACTCAAT---AAAGTGGGTTTGAAGACTAATATCAGTTACCCGTATGTTAACCCAACCAACAAGTGGAGGgtaagggaggggatcaagaatctctgtactaagtcagatgcaggatctgc Alignment from Spaln_nt2Genome GTCAGTAGATTATGGCGCCACCTATGAAAAACTTAATGACAAAGTGGGTTTGAAGACCGTCCTCAGTTATCTCTATGTCAACCCCACCAACAAAAGGAAG cttcaccagtaggtccttgatctctgccgaaatatccattgctttcacagGTCAGTAGATCATGGTGCCTCCTATGAGAAACTCAAT---AAAGTGGGTTTGAAGACTAATATCAGTTACCCGTATGTTAACCCAACCAACAAGTGGAGGgtaagggaggggatcaagaatctctgtactaagtcagatgcaggatctgc Alignment from Pairagon GTCAGTAGATTATGGCGCCACCTATGAAAAACTTAATGACAAAGTGGGTTTGAAGACCGTCCTCAGTTATCTCTATGTCAACCCCACCAACAAAAGGAAG cttcaccagtaggtccttgatctctgccgaaatatccattgctttcacagGTCAGTAGATCATGGTGCCTCCTATGAGAAACTCAAT---AAAGTGGGTTTGAAGACTAATATCAGTTACCCGTATGTTAACCCAACCAACAAGTGGAGGgtaagggaggggatcaagaatctctgtactaagtcagatgcaggatctgc Alignment from Exonerate_protein2genome GTCAGTAGATTATGGCGCCACCTATGAAAAACTTAATGACAAAGTGGGTTTGAAGACCGTCCTCAGTTATCTCTATGTCAACCCCACCAACAAAAGGAAG cttcaccagtaggtccttgatctctgccgaaatatccattgctttcacagGTCAGTAGATCATGGTGCCTCCTATGAGAAACTCAAT---AAAGTGGGTTTGAAGACTAATATCAGTTACCCGTATGTTAACCCAACCAACAAGTGGAGGgtaagggaggggatcaagaatctctgtactaagtcagatgcaggatctgc Alignment from Exonerate_coding2genome GTCAGTAGATTATGGCGCCACCTATGAAAAACTTAATGACAAAGTGGGTTTGAAGACCGTCCTCAGTTATCTCTATGTCAACCCCACCAACAAAAGGAAG cttcaccagtaggtccttgatctctgccgaaatatccattgctttcacagGTCAGTAGATCATGGTGCCTCCTATGAGAAACTCAAT---AAAGTGGGTTTGAAGACTAATATCAGTTACCCGTATGTTAACCCAACCAACAAGTGGAGGgtaagggaggggatcaagaatctctgtactaagtcagatgcaggatctgc Alignment from GeneWise GTCAGTAGATTATGGCGCCACCTATGAAAAACTTAATGACAAAGTGGGTTTGAAGACCGTCCTCAGTTATCTCTATGTCAACCCCACCAACAAAAGGAAG cttcaccagtaggtccttgatctctgccgaaatatccattgctttcacagGTCAGTAGATCATGGTGCCTCCTATGAGAAACTCAAT---AAAGTGGGTTTGAAGACTAATATCAGTTACCCGTATGTTAACCCAACCAACAAGTGGAGGgtaagggaggggatcaagaatctctgtactaagtcagatgcaggatctgc #### Sorcs3_ID10622_16 --> 0 - 2 Original Alignment GGAGAGCCTTGTGTCATGGGGGAAAGGAAAATATTCAAGAAACGCAAGCCAGGCGCTCAGTGTGCCCTTGGCAGAGAGTACTCTGGGTCGGTGGTGTCAGAACCCTGTGTCTGTGCGGACTGGGACTTCGAAtg gtgtgtcttgggtttgtgttgttagcatctgttcctcttgccttggccagGGGGAGCCTTGTGTCACAGGTGAAAGAAAAATTTTCAAAAAACGCAAGCCAGGCACCCAGTGTGCCCTTGGCAGAGGGTACTCAGGGTTGGTTGTACCAGAACCCTGTGTTTGTGCAGATTGGGACTTTGAAtggtaatacaagcattactataggccctttatctccttgtgtaatcactgtg Alignment from CESAR GGAGAGCCTTGTGTCATGGGGGAAAGGAAAATATTCAAGAAACGCAAGCCAGGCGCTCAGTGTGCCCTTGGCAGAGAGTACTCTGGGTCGGTGGTGTCAGAACCCTGTGTCTGTGCGGACTGGGACTTCGAAtg gtgtgtcttgggtttgtgttgttagcatctgttcctcttgccttggccagGGGGAGCCTTGTGTCACAGGTGAAAGAAAAATTTTCAAAAAACGCAAGCCAGGCACCCAGTGTGCCCTTGGCAGAGGGTACTCAGGGTTGGTTGTACCAGAACCCTGTGTTTGTGCAGATTGGGACTTTGAAtggtaatacaagcattactataggccctttatctccttgtgtaatcactgtg Alignment from Spaln_aa2Genome GGAGAGCCTTGTGTCATGGGGGAAAGGAAAATATTCAAGAAACGCAAGCCAGGCGCTCAGTGTGCCCTTGGCAGAGAGTACTCTGGGTCGGTGGTGTCAGAACCCTGTGTCTGTGCGGACTGGGACTTCGAATG gtgtgtcttgggtttgtgttgttagcatctgttcctcttgccttggccagGGGGAGCCTTGTGTCACAGGTGAAAGAAAAATTTTCAAAAAACGCAAGCCAGGCACCCAGTGTGCCCTTGGCAGAGGGTACTCAGGGTTGGTTGTACCAGAACCCTGTGTTTGTGCAGATTGGGACTTTGAATGgtaatacaagcattactataggccctttatctccttgtgtaatcactgtg Alignment from Spaln_nt2Genome GGAGAGCCTTGTGTCATGGGGGAAAGGAAAATATTCAAGAAACGCAAGCCAGGCGCTCAGTGTGCCCTTGGCAGAGAGTACTCTGGGTCGGTGGTGTCAGAACCCTGTGTCTGTGCGGACTGGGACTTCGAATG gtgtgtcttgggtttgtgttgttagcatctgttcctcttgccttggccagGGGGAGCCTTGTGTCACAGGTGAAAGAAAAATTTTCAAAAAACGCAAGCCAGGCACCCAGTGTGCCCTTGGCAGAGGGTACTCAGGGTTGGTTGTACCAGAACCCTGTGTTTGTGCAGATTGGGACTTTGAATGgtaatacaagcattactataggccctttatctccttgtgtaatcactgtg Alignment from Pairagon GGAGAGCCTTGTGTCATGGGGGAAAGGAAAATATTCAAGAAACGCAAGCCAGGCGCTCAGTGTGCCCTTGGCAGAGAGTACTCTGGGTCGGTGGTGTCAGAACCCTGTGTCTGTGCGGACTGGGACTTCGAATG gtgtgtcttgggtttgtgttgttagcatctgttcctcttgccttggccagGGGGAGCCTTGTGTCACAGGTGAAAGAAAAATTTTCAAAAAACGCAAGCCAGGCACCCAGTGTGCCCTTGGCAGAGGGTACTCAGGGTTGGTTGTACCAGAACCCTGTGTTTGTGCAGATTGGGACTTTGAATGgtaatacaagcattactataggccctttatctccttgtgtaatcactgtg Alignment from Exonerate_protein2genome GGAGAGCCTTGTGTCATGGGGGAAAGGAAAATATTCAAGAAACGCAAGCCAGGCGCTCAGTGTGCCCTTGGCAGAGAGTACTCTGGGTCGGTGGTGTCAGAACCCTGTGTCTGTGCGGACTGGGACTTCGAATG gtgtgtcttgggtttgtgttgttagcatctgttcctcttgccttggccagGGGGAGCCTTGTGTCACAGGTGAAAGAAAAATTTTCAAAAAACGCAAGCCAGGCACCCAGTGTGCCCTTGGCAGAGGGTACTCAGGGTTGGTTGTACCAGAACCCTGTGTTTGTGCAGATTGGGACTTTGAATGgtaatacaagcattactataggccctttatctccttgtgtaatcactgtg Alignment from Exonerate_coding2genome GGAGAGCCTTGTGTCATGGGGGAAAGGAAAATATTCAAGAAACGCAAGCCAGGCGCTCAGTGTGCCCTTGGCAGAGAGTACTCTGGGTCGGTGGTGTCAGAACCCTGTGTCTGTGCGGACTGGGACTTCGAATG gtgtgtcttgggtttgtgttgttagcatctgttcctcttgccttggccagGGGGAGCCTTGTGTCACAGGTGAAAGAAAAATTTTCAAAAAACGCAAGCCAGGCACCCAGTGTGCCCTTGGCAGAGGGTACTCAGGGTTGGTTGTACCAGAACCCTGTGTTTGTGCAGATTGGGACTTTGAATGgtaatacaagcattactataggccctttatctccttgtgtaatcactgtg Alignment from GeneWise GGAGAGCCTTGTGTCATGGGGGAAAGGAAAATATTCAAGAAACGCAAGCCAGGCGCTCAGTGTGCCCTTGGCAGAGAGTACTCTGGGTCGGTGGTGTCAGAACCCTGTGTCTGTGCGGACTGGGACTTCGAATG gtgtgtcttgggtttgtgttgttagcatctgttcctcttgccttggccagGGGGAGCCTTGTGTCACAGGTGAAAGAAAAATTTTCAAAAAACGCAAGCCAGGCACCCAGTGTGCCCTTGGCAGAGGGTACTCAGGGTTGGTTGTACCAGAACCCTGTGTTTGTGCAGATTGGGACTTTGAATGgtaatacaagcattactataggccctttatctccttgtgtaatcactgtg #### Sorcs3_ID10628_19 --> 0 - 1 Original Alignment GGTGACCTTCAAAGGACAAACATCCAGCTTGACTTTGGAGATGGGGTGGCTGTATCCTATGCCAACTTCAGCCCCATTGAGGATGGCATCAGGCATGTGTATAAGAGCGCGGGGATCTTCCAG---GTGACAGCTTATGCGGAGAACAACCTTGGCTCGGACACAGCCTTCCTCTTCCTGCATGTGGTTt atggagtggagcacaccaacagcttgggtaactctgctcttgttttccagGGTGACCTTCAGAGGACAAACATCCAACTTGACTTTGGAGATGGGGTGGCTGTATCTTATGCCAACTTCACCCCAATTGAGGATGGCATCAGGCATGTGTATAAGAGTGCAGGGATCTACCAGCAGGTGACGGATTACGCAGAGAATAACCTTGGCTCAGACACAGCCTTTCTCTTCCTGCATGTGGTTtgtaaggtgtgttgactatctcgggggtggcatgttgtctctagcccacat Alignment from CESAR GGTGACCTTCAAAGGACAAACATCCAGCTTGACTTTGGAGATGGGGTGGCTGTATCCTATGCCAACTTCAGCCCCATTGAGGATGGCATCAGGCATGTGTATAAGAGCGCGGGGATCTTC---CAGGTGACAGCTTATGCGGAGAACAACCTTGGCTCGGACACAGCCTTCCTCTTCCTGCATGTGGTTt atggagtggagcacaccaacagcttgggtaactctgctcttgttttccagGGTGACCTTCAGAGGACAAACATCCAACTTGACTTTGGAGATGGGGTGGCTGTATCTTATGCCAACTTCACCCCAATTGAGGATGGCATCAGGCATGTGTATAAGAGTGCAGGGATCTACCAGCAGGTGACGGATTACGCAGAGAATAACCTTGGCTCAGACACAGCCTTTCTCTTCCTGCATGTGGTTtgtaaggtgtgttgactatctcgggggtggcatgttgtctctagcccacat Alignment from Spaln_aa2Genome GGTGACCTTCAAAGGACAAACATCCAGCTTGACTTTGGAGATGGGGTGGCTGTATCCTATGCCAACTTCAGCCCCATTGAGGATGGCATCAGGCATGTGTATAAGAGCGCGGGGATCTTC---CAGGTGACAGCTTATGCGGAGAACAACCTTGGCTCGGACACAGCCTTCCTCTTCCTGCATGTGGTTT atggagtggagcacaccaacagcttgggtaactctgctcttgttttccagGGTGACCTTCAGAGGACAAACATCCAACTTGACTTTGGAGATGGGGTGGCTGTATCTTATGCCAACTTCACCCCAATTGAGGATGGCATCAGGCATGTGTATAAGAGTGCAGGGATCTACCAGCAGGTGACGGATTACGCAGAGAATAACCTTGGCTCAGACACAGCCTTTCTCTTCCTGCATGTGGTTTgtaaggtgtgttgactatctcgggggtggcatgttgtctctagcccacat Alignment from Spaln_nt2Genome GGTGACCTTCAAAGGACAAACATCCAGCTTGACTTTGGAGATGGGGTGGCTGTATCCTATGCCAACTTCAGCCCCATTGAGGATGGCATCAGGCATGTGTATAAGAGCGCGGGGATCTTCCAG---GTGACAGCTTATGCGGAGAACAACCTTGGCTCGGACACAGCCTTCCTCTTCCTGCATGTGGTTT atggagtggagcacaccaacagcttgggtaactctgctcttgttttccagGGTGACCTTCAGAGGACAAACATCCAACTTGACTTTGGAGATGGGGTGGCTGTATCTTATGCCAACTTCACCCCAATTGAGGATGGCATCAGGCATGTGTATAAGAGTGCAGGGATCTACCAGCAGGTGACGGATTACGCAGAGAATAACCTTGGCTCAGACACAGCCTTTCTCTTCCTGCATGTGGTTTgtaaggtgtgttgactatctcgggggtggcatgttgtctctagcccacat Alignment from Pairagon GGTGACCTTCAAAGGACAAACATCCAGCTTGACTTTGGAGATGGGGTGGCTGTATCCTATGCCAACTTCAGCCCCATTGAGGATGGCATCAGGCATGTGTATAAGAGCGCGGGGATCTTC---CAGGTGACAGCTTATGCGGAGAACAACCTTGGCTCGGACACAGCCTTCCTCTTCCTGCATGTGGTTT atggagtggagcacaccaacagcttgggtaactctgctcttgttttccagGGTGACCTTCAGAGGACAAACATCCAACTTGACTTTGGAGATGGGGTGGCTGTATCTTATGCCAACTTCACCCCAATTGAGGATGGCATCAGGCATGTGTATAAGAGTGCAGGGATCTACCAGCAGGTGACGGATTACGCAGAGAATAACCTTGGCTCAGACACAGCCTTTCTCTTCCTGCATGTGGTTTgtaaggtgtgttgactatctcgggggtggcatgttgtctctagcccacat Alignment from Exonerate_protein2genome GGTGACCTTCAAAGGACAAACATCCAGCTTGACTTTGGAGATGGGGTGGCTGTATCCTATGCCAACTTCAGCCCCATTGAGGATGGCATCAGGCATGTGTATAAGAGCGCGGGGATCTTC---CAGGTGACAGCTTATGCGGAGAACAACCTTGGCTCGGACACAGCCTTCCTCTTCCTGCATGTGGTTT atggagtggagcacaccaacagcttgggtaactctgctcttgttttccagGGTGACCTTCAGAGGACAAACATCCAACTTGACTTTGGAGATGGGGTGGCTGTATCTTATGCCAACTTCACCCCAATTGAGGATGGCATCAGGCATGTGTATAAGAGTGCAGGGATCTACCAGCAGGTGACGGATTACGCAGAGAATAACCTTGGCTCAGACACAGCCTTTCTCTTCCTGCATGTGGTTTgtaaggtgtgttgactatctcgggggtggcatgttgtctctagcccacat Alignment from Exonerate_coding2genome GGTGACCTTCAAAGGACAAACATCCAGCTTGACTTTGGAGATGGGGTGGCTGTATCCTATGCCAACTTCAGCCCCATTGAGGATGGCATCAGGCATGTGTATAAGAGCGCGGGGATCTTC---CAGGTGACAGCTTATGCGGAGAACAACCTTGGCTCGGACACAGCCTTCCTCTTCCTGCATGTGGTTT atggagtggagcacaccaacagcttgggtaactctgctcttgttttccagGGTGACCTTCAGAGGACAAACATCCAACTTGACTTTGGAGATGGGGTGGCTGTATCTTATGCCAACTTCACCCCAATTGAGGATGGCATCAGGCATGTGTATAAGAGTGCAGGGATCTACCAGCAGGTGACGGATTACGCAGAGAATAACCTTGGCTCAGACACAGCCTTTCTCTTCCTGCATGTGGTTTgtaaggtgtgttgactatctcgggggtggcatgttgtctctagcccacat Alignment from GeneWise GGTGACCTTCAAAGGACAAACATCCAGCTTGACTTTGGAGATGGGGTGGCTGTATCCTATGCCAACTTCAGCCCCATTGAGGATGGCATCAGGCATGTGTATAAGAGCGCGGGGATCTTC---CAGGTGACAGCTTATGCGGAGAACAACCTTGGCTCGGACACAGCCTTCCTCTTCCTGCATGTGGTTT atggagtggagcacaccaacagcttgggtaactctgctcttgttttccagGGTGACCTTCAGAGGACAAACATCCAACTTGACTTTGGAGATGGGGTGGCTGTATCTTATGCCAACTTCACCCCAATTGAGGATGGCATCAGGCATGTGTATAAGAGTGCAGGGATCTACCAGCAGGTGACGGATTACGCAGAGAATAACCTTGGCTCAGACACAGCCTTTCTCTTCCTGCATGTGGTTTgtaaggtgtgttgactatctcgggggtggcatgttgtctctagcccacat #### Sptbn2_ID608_3 --> 0 - 0 Original Alignment CCAAAACCTACCAAGGGCCGAATGCGGATTCACTGCCTGGAGAATGTAGATAAAGCGCTGCAGTTCCTGAAGGAGCAGAAGGTGCACTTGGAAAACATGGGCTCCCATGACATTGTGGACGGAAACCACCGTCTGACCCTTGGGCTAGTGTGGACCATCATCCTCCGATTTCAG gttttgtgagtaactaaataccgtttttagtggggtctctctgcttacagTCAAAGCCAACGAAAGGCCGGATGCAGATTCACTGCCTGGAAAATGTAGATAAAGCACTGCAGTTCCTGAAGGAACAGAAAGTGCACTTGCAAAACACAGGCTCACATGATATTGTTGATGGAAACCATCACCTGACTCTTGGGCTTGTCTGGACTATTGTACTCCGATTCCAGgtgagtttgatttttatttataatgcaacccaggggattactgtctaaca Alignment from CESAR CCAAAACCTACCAAGGGCCGAATGCGGATTCACTGCCTGGAGAATGTAGATAAAGCGCTGCAGTTCCTGAAGGAGCAGAAGGTGCACTTGGAAAACATGGGCTCCCATGACATTGTGGACGGAAACCACCGTCTGACCCTTGGGCTAGTGTGGACCATCATCCTCCGATTTCAG gttttgtgagtaactaaataccgtttttagtggggtctctctgcttacagTCAAAGCCAACGAAAGGCCGGATGCAGATTCACTGCCTGGAAAATGTAGATAAAGCACTGCAGTTCCTGAAGGAACAGAAAGTGCACTTGCAAAACACAGGCTCACATGATATTGTTGATGGAAACCATCACCTGACTCTTGGGCTTGTCTGGACTATTGTACTCCGATTCCAGgtgagtttgatttttatttataatgcaacccaggggattactgtctaaca Alignment from Spaln_aa2Genome CCAAAACCTACCAAGGGCCGAATGCGGATTCACTGCCTGGAGAATGTAGATAAAGCGCTGCAGTTCCTGAAGGAGCAGAAGGTGCACTTGGAAAACATGGGCTCCCATGACATTGTGGACGGAAACCACCGTCTGACCCTTGGGCTAGTGTGGACCATCATCCTCCGATTTCAG gttttgtgagtaactaaataccgtttttagtggggtctctctgcttacagTCAAAGCCAACGAAAGGCCGGATGCAGATTCACTGCCTGGAAAATGTAGATAAAGCACTGCAGTTCCTGAAGGAACAGAAAGTGCACTTGCAAAACACAGGCTCACATGATATTGTTGATGGAAACCATCACCTGACTCTTGGGCTTGTCTGGACTATTGTACTCCGATTCCAGgtgagtttgatttttatttataatgcaacccaggggattactgtctaaca Alignment from Spaln_nt2Genome CCAAAACCTACCAAGGGCCGAATGCGGATTCACTGCCTGGAGAATGTAGATAAAGCGCTGCAGTTCCTGAAGGAGCAGAAGGTGCACTTGGAAAACATGGGCTCCCATGACATTGTGGACGGAAACCACCGTCTGACCCTTGGGCTAGTGTGGACCATCATCCTCCGATTTCAG gttttgtgagtaactaaataccgtttttagtggggtctctctgcttacagTCAAAGCCAACGAAAGGCCGGATGCAGATTCACTGCCTGGAAAATGTAGATAAAGCACTGCAGTTCCTGAAGGAACAGAAAGTGCACTTGCAAAACACAGGCTCACATGATATTGTTGATGGAAACCATCACCTGACTCTTGGGCTTGTCTGGACTATTGTACTCCGATTCCAGgtgagtttgatttttatttataatgcaacccaggggattactgtctaaca Alignment from Pairagon CCAAAACCTACCAAGGGCCGAATGCGGATTCACTGCCTGGAGAATGTAGATAAAGCGCTGCAGTTCCTGAAGGAGCAGAAGGTGCACTTGGAAAACATGGGCTCCCATGACATTGTGGACGGAAACCACCGTCTGACCCTTGGGCTAGTGTGGACCATCATCCTCCGATTTCAG gttttgtgagtaactaaataccgtttttagtggggtctctctgcttacagTCAAAGCCAACGAAAGGCCGGATGCAGATTCACTGCCTGGAAAATGTAGATAAAGCACTGCAGTTCCTGAAGGAACAGAAAGTGCACTTGCAAAACACAGGCTCACATGATATTGTTGATGGAAACCATCACCTGACTCTTGGGCTTGTCTGGACTATTGTACTCCGATTCCAGgtgagtttgatttttatttataatgcaacccaggggattactgtctaaca Alignment from Exonerate_protein2genome gttttgtgagtaactaaataccgtttttagtggggtctctctgcttacagtcaaagccaacgaaaggccggatgcagattcactgcctggaaaatgtagataaagcactgcagttcctgaaggaacagaaagtgcacttgcaaaacacaggctcacatgatattgttgatggaaaccatcacctgactcttgggcttgtctggactattgtactccgattccaggtgagtttgatttttatttataatgcaacccaggggattactgtctaaca Alignment from Exonerate_coding2genome gttttgtgagtaactaaataccgtttttagtggggtctctctgcttacagtcaaagccaacgaaaggccggatgcagattcactgcctggaaaatgtagataaagcactgcagttcctgaaggaacagaaagtgcacttgcaaaacacaggctcacatgatattgttgatggaaaccatcacctgactcttgggcttgtctggactattgtactccgattccaggtgagtttgatttttatttataatgcaacccaggggattactgtctaaca Alignment from GeneWise CCAAAACCTACCAAGGGCCGAATGCGGATTCACTGCCTGGAGAATGTAGATAAAGCGCTGCAGTTCCTGAAGGAGCAGAAGGTGCACTTGGAAAACATGGGCTCCCATGACATTGTGGACGGAAACCACCGTCTGACCCTTGGGCTAGTGTGGACCATCATCCTCCGATTTCAG gttttgtgagtaactaaataccgtttttagtggggtctctctgcttacagTCAAAGCCAACGAAAGGCCGGATGCAGATTCACTGCCTGGAAAATGTAGATAAAGCACTGCAGTTCCTGAAGGAACAGAAAGTGCACTTGCAAAACACAGGCTCACATGATATTGTTGATGGAAACCATCACCTGACTCTTGGGCTTGTCTGGACTATTGTACTCCGATTCCAGgtgagtttgatttttatttataatgcaacccaggggattactgtctaaca #### Sptbn2_ID612_7 --> 2 - 0 Original Alignment atGTGAATGTAGACCAGCCCGACGAGAAGTCTATCATCACCTACGTGGCCACTTACTACCACTACTTCTCCAAGATGAAGGCCCTGGCTGTGGAAGGCAAAAGAATTGGCAAG agggacatggggggaacacaatttattgagttgaccgtgtctctgggcagatGTGAATGTAGATCAGCCTGATGAGCAGTCTGTCATTACCTATGTGTCCACCTACTACCACTACTTCTCCAGGATGAAGGCTCTATCAGTGGAAGGAAAAAGAACTGGGAAGgtaaggtctccattgaacaccatctgaaagttctagtaaggaccagataa Alignment from CESAR atGTGAATGTAGACCAGCCCGACGAGAAGTCTATCATCACCTACGTGGCCACTTACTACCACTACTTCTCCAAGATGAAGGCCCTGGCTGTGGAAGGCAAAAGAATTGGCAAG agggacatggggggaacacaatttattgagttgaccgtgtctctgggcagatGTGAATGTAGATCAGCCTGATGAGCAGTCTGTCATTACCTATGTGTCCACCTACTACCACTACTTCTCCAGGATGAAGGCTCTATCAGTGGAAGGAAAAAGAACTGGGAAGgtaaggtctccattgaacaccatctgaaagttctagtaaggaccagataa Alignment from Spaln_aa2Genome ATGTGAATGTAGACCAGCCCGACGAGAAGTCTATCATCACCTACGTGGCCACTTACTACCACTACTTCTCCAAGATGAAGGCCCTGGCTGTGGAAGGCAAAAGAATTGGCAAG agggacatggggggaacacaatttattgagttgaccgtgtctctgggcagATGTGAATGTAGATCAGCCTGATGAGCAGTCTGTCATTACCTATGTGTCCACCTACTACCACTACTTCTCCAGGATGAAGGCTCTATCAGTGGAAGGAAAAAGAACTGGGAAGgtaaggtctccattgaacaccatctgaaagttctagtaaggaccagataa Alignment from Spaln_nt2Genome ATGTGAATGTAGACCAGCCCGACGAGAAGTCTATCATCACCTACGTGGCCACTTACTACCACTACTTCTCCAAGATGAAGGCCCTGGCTGTGGAAGGCAAAAGAATTGGCAAG agggacatggggggaacacaatttattgagttgaccgtgtctctgggcagATGTGAATGTAGATCAGCCTGATGAGCAGTCTGTCATTACCTATGTGTCCACCTACTACCACTACTTCTCCAGGATGAAGGCTCTATCAGTGGAAGGAAAAAGAACTGGGAAGgtaaggtctccattgaacaccatctgaaagttctagtaaggaccagataa Alignment from Pairagon ATGTGAATGTAGACCAGCCCGACGAGAAGTCTATCATCACCTACGTGGCCACTTACTACCACTACTTCTCCAAGATGAAGGCCCTGGCTGTGGAAGGCAAAAGAATTGGCAAG agggacatggggggaacacaatttattgagttgaccgtgtctctgggcagATGTGAATGTAGATCAGCCTGATGAGCAGTCTGTCATTACCTATGTGTCCACCTACTACCACTACTTCTCCAGGATGAAGGCTCTATCAGTGGAAGGAAAAAGAACTGGGAAGgtaaggtctccattgaacaccatctgaaagttctagtaaggaccagataa Alignment from Exonerate_protein2genome agggacatggggggaacacaatttattgagttgaccgtgtctctgggcagatgtgaatgtagatcagcctgatgagcagtctgtcattacctatgtgtccacctactaccactacttctccaggatgaaggctctatcagtggaaggaaaaagaactgggaaggtaaggtctccattgaacaccatctgaaagttctagtaaggaccagataa Alignment from Exonerate_coding2genome agggacatggggggaacacaatttattgagttgaccgtgtctctgggcagatgtgaatgtagatcagcctgatgagcagtctgtcattacctatgtgtccacctactaccactacttctccaggatgaaggctctatcagtggaaggaaaaagaactgggaaggtaaggtctccattgaacaccatctgaaagttctagtaaggaccagataa Alignment from GeneWise ATGTGAATGTAGACCAGCCCGACGAGAAGTCTATCATCACCTACGTGGCCACTTACTACCACTACTTCTCCAAGATGAAGGCCCTGGCTGTGGAAGGCAAAAGAATTGGCAAG agggacatggggggaacacaatttattgagttgaccgtgtctctgggcagATGTGAATGTAGATCAGCCTGATGAGCAGTCTGTCATTACCTATGTGTCCACCTACTACCACTACTTCTCCAGGATGAAGGCTCTATCAGTGGAAGGAAAAAGAACTGGGAAGgtaaggtctccattgaacaccatctgaaagttctagtaaggaccagataa #### Sptbn2_ID627_22 --> 0 - 0 Original Alignment ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAG---------GAGTTACACATGATGGGCCAGGAAAAGGCCAAG aatgtgtgtagccttttttgcaaggctgttaaacattcttatacctgcagACCTTGCAGAAGAAAATCCAGGGCCATGAACCTCGGATTGCTGATCTTCGAGAAAGGCAACGAACTTTGCGTACAGCAGCAGTGGGCCCAGATTTGGCTAATCTCCAAGAAATGTGGAAACGCTTGAGCTATGAGTTGGAGTTACATGGTAAGCGGCTGGAGGAGGCTCTTAGAACTCAACAATTTTTTCATGATGCTGCAAAGGCTGAGGCCTGGATGGGTGACCGGGGTGACCGGGAATTGCACACAATGGGGCAAGAAAGGGCAAGGgtaagtgctaaggaatctttcaattgctaacaattctcttactcaagcaa Alignment from CESAR ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAG---------GAGTTACACATGATGGGCCAGGAAAAGGCCAAG aatgtgtgtagccttttttgcaaggctgttaaacattcttatacctgcagACCTTGCAGAAGAAAATCCAGGGCCATGAACCTCGGATTGCTGATCTTCGAGAAAGGCAACGAACTTTGCGTACAGCAGCAGTGGGCCCAGATTTGGCTAATCTCCAAGAAATGTGGAAACGCTTGAGCTATGAGTTGGAGTTACATGGTAAGCGGCTGGAGGAGGCTCTTAGAACTCAACAATTTTTTCATGATGCTGCAAAGGCTGAGGCCTGGATGGGTGACCGGGGTGACCGGGAATTGCACACAATGGGGCAAGAAAGGGCAAGGgtaagtgctaaggaatctttcaattgctaacaattctcttactcaagcaa Alignment from Spaln_aa2Genome ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATG---------GGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG aatgtgtgtagccttttttgcaaggctgttaaacattcttatacctgcagACCTTGCAGAAGAAAATCCAGGGCCATGAACCTCGGATTGCTGATCTTCGAGAAAGGCAACGAACTTTGCGTACAGCAGCAGTGGGCCCAGATTTGGCTAATCTCCAAGAAATGTGGAAACGCTTGAGCTATGAGTTGGAGTTACATGGTAAGCGGCTGGAGGAGGCTCTTAGAACTCAACAATTTTTTCATGATGCTGCAAAGGCTGAGGCCTGGATGGGTGACCGGGGTGACCGGGAATTGCACACAATGGGGCAAGAAAGGGCAAGGgtaagtgctaaggaatctttcaattgctaacaattctcttactcaagcaa Alignment from Spaln_nt2Genome ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGG---------AGTTACACATGATGGGCCAGGAAAAGGCCAAG aatgtgtgtagccttttttgcaaggctgttaaacattcttatacctgcagACCTTGCAGAAGAAAATCCAGGGCCATGAACCTCGGATTGCTGATCTTCGAGAAAGGCAACGAACTTTGCGTACAGCAGCAGTGGGCCCAGATTTGGCTAATCTCCAAGAAATGTGGAAACGCTTGAGCTATGAGTTGGAGTTACATGGTAAGCGGCTGGAGGAGGCTCTTAGAACTCAACAATTTTTTCATGATGCTGCAAAGGCTGAGGCCTGGATGGGTGACCGGGGTGACCGGGAATTGCACACAATGGGGCAAGAAAGGGCAAGGgtaagtgctaaggaatctttcaattgctaacaattctcttactcaagcaa Alignment from Pairagon ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGAT---------GGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG aatgtgtgtagccttttttgcaaggctgttaaacattcttatacctgcagACCTTGCAGAAGAAAATCCAGGGCCATGAACCTCGGATTGCTGATCTTCGAGAAAGGCAACGAACTTTGCGTACAGCAGCAGTGGGCCCAGATTTGGCTAATCTCCAAGAAATGTGGAAACGCTTGAGCTATGAGTTGGAGTTACATGGTAAGCGGCTGGAGGAGGCTCTTAGAACTCAACAATTTTTTCATGATGCTGCAAAGGCTGAGGCCTGGATGGGTGACCGGGGTGACCGGGAATTGCACACAATGGGGCAAGAAAGGGCAAGGgtaagtgctaaggaatctttcaattgctaacaattctcttactcaagcaa Alignment from Exonerate_protein2genome ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATG---------GGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG aatgtgtgtagccttttttgcaaggctgttaaacattcttatacctgcagACCTTGCAGAAGAAAATCCAGGGCCATGAACCTCGGATTGCTGATCTTCGAGAAAGGCAACGAACTTTGCGTACAGCAGCAGTGGGCCCAGATTTGGCTAATCTCCAAGAAATGTGGAAACGCTTGAGCTATGAGTTGGAGTTACATGGTAAGCGGCTGGAGGAGGCTCTTAGAACTCAACAATTTTTTCATGATGCTGCAAAGGCTGAGGCCTGGATGGGTGACCGGGGTGACCGGGAATTGCACACAATGGGGCAAGAAAGGGCAAGGgtaagtgctaaggaatctttcaattgctaacaattctcttactcaagcaa Alignment from Exonerate_coding2genome ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATG---------GGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG aatgtgtgtagccttttttgcaaggctgttaaacattcttatacctgcagACCTTGCAGAAGAAAATCCAGGGCCATGAACCTCGGATTGCTGATCTTCGAGAAAGGCAACGAACTTTGCGTACAGCAGCAGTGGGCCCAGATTTGGCTAATCTCCAAGAAATGTGGAAACGCTTGAGCTATGAGTTGGAGTTACATGGTAAGCGGCTGGAGGAGGCTCTTAGAACTCAACAATTTTTTCATGATGCTGCAAAGGCTGAGGCCTGGATGGGTGACCGGGGTGACCGGGAATTGCACACAATGGGGCAAGAAAGGGCAAGGgtaagtgctaaggaatctttcaattgctaacaattctcttactcaagcaa Alignment from GeneWise ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAG---------GAGTTACACATGATGGGCCAGGAAAAGGCCAAG aatgtgtgtagccttttttgcaaggctgttaaacattcttatacctgcagACCTTGCAGAAGAAAATCCAGGGCCATGAACCTCGGATTGCTGATCTTCGAGAAAGGCAACGAACTTTGCGTACAGCAGCAGTGGGCCCAGATTTGGCTAATCTCCAAGAAATGTGGAAACGCTTGAGCTATGAGTTGGAGTTACATGGTAAGCGGCTGGAGGAGGCTCTTAGAACTCAACAATTTTTTCATGATGCTGCAAAGGCTGAGGCCTGGATGGGTGACCGGGGTGACCGGGAATTGCACACAATGGGGCAAGAAAGGGCAAGGgtaagtgctaaggaatctttcaattgctaacaattctcttactcaagcaa #### Sptbn2_ID631_26 --> 0 - 2 Original Alignment GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCcg tctgtgatctaccatctcttccagtcctgagccacatttgttccctgtagGTCCAGCAAGTTCATGATGATGGCCCACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATCGGTCGTCATATGCAGGCAGTAGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTATGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCcggtataccttgtggtggctggttttacccaattgctactaagttgggcagg Alignment from CESAR GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCcg tctgtgatctaccatctcttccagtcctgagccacatttgttccctgtagGTCCAGCAAGTTCATGATGATGGCCCACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATCGGTCGTCATATGCAGGCAGTAGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTATGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCcggtataccttgtggtggctggttttacccaattgctactaagttgggcagg Alignment from Spaln_aa2Genome GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtgatctaccatctcttccagtcctgagccacatttgttccctgtagGTCCAGCAAGTTCATGATGATGGCCCACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATCGGTCGTCATATGCAGGCAGTAGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTATGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCCGgtataccttgtggtggctggttttacccaattgctactaagttgggcagg Alignment from Spaln_nt2Genome GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtgatctaccatctcttccagtcctgagccacatttgttccctgtagGTCCAGCAAGTTCATGATGATGGCCCACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATCGGTCGTCATATGCAGGCAGTAGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTATGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCCGgtataccttgtggtggctggttttacccaattgctactaagttgggcagg Alignment from Pairagon GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtgatctaccatctcttccagtcctgagccacatttgttccctgtagGTCCAGCAAGTTCATGATGATGGCCCACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATCGGTCGTCATATGCAGGCAGTAGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTATGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCCGgtataccttgtggtggctggttttacccaattgctactaagttgggcagg Alignment from Exonerate_protein2genome GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtgatctaccatctcttccagtcctgagccacatttgttccctgtagGTCCAGCAAGTTCATGATGATGGCCCACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATCGGTCGTCATATGCAGGCAGTAGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTATGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCCGgtataccttgtggtggctggttttacccaattgctactaagttgggcagg Alignment from Exonerate_coding2genome GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtgatctaccatctcttccagtcctgagccacatttgttccctgtagGTCCAGCAAGTTCATGATGATGGCCCACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATCGGTCGTCATATGCAGGCAGTAGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTATGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCCGgtataccttgtggtggctggttttacccaattgctactaagttgggcagg Alignment from GeneWise GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtgatctaccatctcttccagtcctgagccacatttgttccctgtagGTCCAGCAAGTTCATGATGATGGCCCACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATCGGTCGTCATATGCAGGCAGTAGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTATGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCCGgtataccttgtggtggctggttttacccaattgctactaagttgggcagg #### Sptbn2_ID639_34 --> 1 - 2 Original Alignment gTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGgg cactccccctagcctctaacattgagagaagaacttttctttccactcaggTCATGGCAAAATGTGTATTGCGTACTTAGGTGTGGAAGCCTTGGCTTCTACAAGGATGCCAAGGCTGCTAGTGCTGGGGTGCCATAT------GAAGTGCCCGTCAGCCTGGCCAGGGCCCAAGGTAGTGTGGCGTTTGATTATAGGAAGCGCAAACATGTTTTCAAACTGgggtaaggttgcaagcttaactaagtggccacctatactagggttttaatgt Alignment from CESAR gTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGgg cactccccctagcctctaacattgagagaagaacttttctttccactcaggTCATGGCAAAATGTGTATTGCGTACTTAGGTGTGGAAGCCTTGGCTTCTACAAGGATGCCAAGGCTGCTAGTGCTGGGGTGCCATAT------GAAGTGCCCGTCAGCCTGGCCAGGGCCCAAGGTAGTGTGGCGTTTGATTATAGGAAGCGCAAACATGTTTTCAAACTGgggtaaggttgcaagcttaactaagtggccacctatactagggttttaatgt Alignment from Spaln_aa2Genome GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG cactccccctagcctctaacattgagagaagaacttttctttccactcagGTCATGGCAAAATGTGTATTGCGTACTTAGGTGTGGAAGCCTTGGCTTCTACAAGGATGCCAAGGCTGCTAGTGCTGGGGTGCCATAT------GAAGTGCCCGTCAGCCTGGCCAGGGCCCAAGGTAGTGTGGCGTTTGATTATAGGAAGCGCAAACATGTTTTCAAACTGGGgtaaggttgcaagcttaactaagtggccacctatactagggttttaatgt Alignment from Spaln_nt2Genome GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG cactccccctagcctctaacattgagagaagaacttttctttccactcagGTCATGGCAAAATGTGTATTGCGTACTTAGGTGTGGAAGCCTTGGCTTCTACAAGGATGCCAAGGCTGCTAGTGCTGGGGTGCCATA------TGAAGTGCCCGTCAGCCTGGCCAGGGCCCAAGGTAGTGTGGCGTTTGATTATAGGAAGCGCAAACATGTTTTCAAACTGGGgtaaggttgcaagcttaactaagtggccacctatactagggttttaatgt Alignment from Pairagon GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG cactccccctagcctctaacattgagagaagaacttttctttccactcagGTCATGGCAAAATGTGTATTGCGTACTTAGGTGTGGAAGCCTTGGCTTCTACAAGGATGCCAAGGCTGCTAGTGCTGGGGTGCCATAT------GAAGTGCCCGTCAGCCTGGCCAGGGCCCAAGGTAGTGTGGCGTTTGATTATAGGAAGCGCAAACATGTTTTCAAACTGGGgtaaggttgcaagcttaactaagtggccacctatactagggttttaatgt Alignment from Exonerate_protein2genome GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG cactccccctagcctctaacattgagagaagaacttttctttccactcagGTCATGGCAAAATGTGTATTGCGTACTTAGGTGTGGAAGCCTTGGCTTCTACAAGGATGCCAAGGCTGCTAGTGCTGGGGTGCCATAT------GAAGTGCCCGTCAGCCTGGCCAGGGCCCAAGGTAGTGTGGCGTTTGATTATAGGAAGCGCAAACATGTTTTCAAACTGGGgtaaggttgcaagcttaactaagtggccacctatactagggttttaatgt Alignment from Exonerate_coding2genome GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG cactccccctagcctctaacattgagagaagaacttttctttccactcagGTCATGGCAAAATGTGTATTGCGTACTTAGGTGTGGAAGCCTTGGCTTCTACAAGGATGCCAAGGCTGCTAGTGCTGGGGTGCCATAT------GAAGTGCCCGTCAGCCTGGCCAGGGCCCAAGGTAGTGTGGCGTTTGATTATAGGAAGCGCAAACATGTTTTCAAACTGGGgtaaggttgcaagcttaactaagtggccacctatactagggttttaatgt Alignment from GeneWise GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG cactccccctagcctctaacattgagagaagaacttttctttccactcagGTCATGGCAAAATGTGTATTGCGTACTTAGGTGTGGAAGCCTTGGCTTCTACAAGGATGCCAAGGCTGCTAGTGCTGGGGTGCCATAT------GAAGTGCCCGTCAGCCTGGCCAGGGCCCAAGGTAGTGTGGCGTTTGATTATAGGAAGCGCAAACATGTTTTCAAACTGGGgtaaggttgcaagcttaactaagtggccacctatactagggttttaatgt #### Ssh3_ID452_4 --> 0 - 2 Original Alignment GCAGCCCAGCTGGAGGCAGCCCGACCCCCCAGACTTCGCTACCTGCTGGTAGTATCCACGGGAGAAGAACTGAGTGAGGAGGCCATCCTGCTTGGGGTGGACTTCCCTGACAGCag agtgatcaagtttgacctgacaactagctatgtccaactttactcaacagGTTGCCCAATTGGAGGCAGCCCAACCGCCCAGAATTCAGTACCCACTGGTAGTATCCATGGGGGAAGAGCTGAGTGAAGAGGCTATTTTGCTG------GACTTCCCTGACAGCaggtgagcagttgataagataaggtttagttgaggctcaaatgtaccagtga Alignment from CESAR GCAGCCCAGCTGGAGGCAGCCCGACCCCCCAGACTTCGCTACCTGCTGGTAGTATCCACGGGAGAAGAACTGAGTGAGGAGGCCATCCTGCTTGGGGTGGACTTCCCTGACAGCag agtgatcaagtttgacctgacaactagctatgtccaactttactcaacagGTTGCCCAATTGGAGGCAGCCCAACCGCCCAGAATTCAGTACCCACTGGTAGTATCCATGGGGGAAGAGCTGAGTGAAGAGGCTATTTTGCTG------GACTTCCCTGACAGCaggtgagcagttgataagataaggtttagttgaggctcaaatgtaccagtga Alignment from Spaln_aa2Genome GCAGCCCAGCTGGAGGCAGCCCGACCCCCCAGACTTCGCTACCTGCTGGTAGTATCCACGGGAGAAGAACTGAGTGAGGAGGCCATCCTGCTTGGGGTGGACTTCCCTGACAGCAG agtgatcaagtttgacctgacaactagctatgtccaactttactcaacagGTTGCCCAATTGGAGGCAGCCCAACCGCCCAGAATTCAGTACCCACTGGTAGTATCCATGGGGGAAGAGCTGAGTGAAGAGGCTATTTTGCTG------GACTTCCCTGACAGCAGgtgagcagttgataagataaggtttagttgaggctcaaatgtaccagtga Alignment from Spaln_nt2Genome GCAGCCCAGCTGGAGGCAGCCCGACCCCCCAGACTTCGCTACCTGCTGGTAGTATCCACGGGAGAAGAACTGAGTGAGGAGGCCATCCTGCTTGGGGTGGACTTCCCTGACAGCAG agtgatcaagtttgacctgacaactagctatgtccaactttactcaacagGTTGCCCAATTGGAGGCAGCCCAACCGCCCAGAATTCAGTACCCACTGGTAGTATCCATGGGGGAAGAGCTGAGTGAAGAGGCTATTTTGC------TGGACTTCCCTGACAGCAGgtgagcagttgataagataaggtttagttgaggctcaaatgtaccagtga Alignment from Pairagon GCAGCCCAGCTGGAGGCAGCCCGACCCCCCAGACTTCGCTACCTGCTGGTAGTATCCACGGGAGAAGAACTGAGTGAGGAGGCCATCCTGCTTGGGGTGGACTTCCCTGACAGCAG agtgatcaagtttgacctgacaactagctatgtccaactttactcaacagGTTGCCCAATTGGAGGCAGCCCAACCGCCCAGAATTCAGTACCCACTGGTAGTATCCATGGGGGAAGAGCTGAGTGAAGAGGCTATTTTGC------TGGACTTCCCTGACAGCAGgtgagcagttgataagataaggtttagttgaggctcaaatgtaccagtga Alignment from Exonerate_protein2genome GCAGCCCAGCTGGAGGCAGCCCGACCCCCCAGACTTCGCTACCTGCTGGTAGTATCCACGGGAGAAGAACTGAGTGAGGAGGCCATCCTGCTTGGGGTGGACTTCCCTGACAGCAG agtgatcaagtttgacctgacaactagctatgtccaactttactcaacagGTTGCCCAATTGGAGGCAGCCCAACCGCCCAGAATTCAGTACCCACTGGTAGTATCCATGGGGGAAGAGCTGAGTGAAGAGGCTATTTTGCTG------GACTTCCCTGACAGCAGgtgagcagttgataagataaggtttagttgaggctcaaatgtaccagtga Alignment from Exonerate_coding2genome GCAGCCCAGCTGGAGGCAGCCCGACCCCCCAGACTTCGCTACCTGCTGGTAGTATCCACGGGAGAAGAACTGAGTGAGGAGGCCATCCTGCTTGGGGTGGACTTCCCTGACAGCAG agtgatcaagtttgacctgacaactagctatgtccaactttactcaacagGTTGCCCAATTGGAGGCAGCCCAACCGCCCAGAATTCAGTACCCACTGGTAGTATCCATGGGGGAAGAGCTGAGTGAAGAGGCTATTTTGCTG------GACTTCCCTGACAGCAGgtgagcagttgataagataaggtttagttgaggctcaaatgtaccagtga Alignment from GeneWise GCAGCCCAGCTGGAGGCAGCCCGACCCCCCAGACTTCGCTACCTGCTGGTAGTATCCACGGGAGAAGAACTGAGTGAGGAGGCCATCCTGCTTGGGGTGGACTTCCCTGACAGCAG agtgatcaagtttgacctgacaactagctatgtccaactttactcaacagGTTGCCCAATTGGAGGCAGCCCAACCGCCCAGAATTCAGTACCCACTGGTAGTATCCATGGGGGAAGAGCTGAGTGAAGAGGCTATTTTGCTG------GACTTCCCTGACAGCAGgtgagcagttgataagataaggtttagttgaggctcaaatgtaccagtga #### Ssh3_ID454_2 --> 0 - 2 Original Alignment CAGGACCGAGTGGTAAGACGCAGAGGCCGG---CTCCAGCGCag atgattcttctctactccttacctggcaagaacgcatctccctgtcccagGAAGACCGTGTGGTGAGACGAAAGGGTCGTCTCCTCCAGCGCaggtaaaaatttctccttttatatatggcttgtcaaagctcagaagaggtag Alignment from CESAR CAGGACCGAGTGGTAAGACGCAGAGGCCGGCTC---CAGCGCag atgattcttctctactccttacctggcaagaacgcatctccctgtcccagGAAGACCGTGTGGTGAGACGAAAGGGTCGTCTCCTCCAGCGCaggtaaaaatttctccttttatatatggcttgtcaaagctcagaagaggtag Alignment from Spaln_aa2Genome CAGGACCGAGTGGTAAGACGCAGAGGCCGG---CTCCAGCGCAG atgattcttctctactccttacctggcaagaacgcatctccctgtcccagGAAGACCGTGTGGTGAGACGAAAGGGTCGTCTCCTCCAGCGCAGgtaaaaatttctccttttatatatggcttgtcaaagctcagaagaggtag Alignment from Spaln_nt2Genome CAGGACCGAGTGGTAAGACGCAGAGGCCGGCTCC---AGCGCAG atgattcttctctactccttacctggcaagaacgcatctccctgtcccagGAAGACCGTGTGGTGAGACGAAAGGGTCGTCTCCTCCAGCGCAGgtaaaaatttctccttttatatatggcttgtcaaagctcagaagaggtag Alignment from Pairagon CAGGACCGAGTGGTAAGACGCAGAGGCCG---GCTCCAGCGCAG atgattcttctctactccttacctggcaagaacgcatctccctgtcccagGAAGACCGTGTGGTGAGACGAAAGGGTCGTCTCCTCCAGCGCAGgtaaaaatttctccttttatatatggcttgtcaaagctcagaagaggtag Alignment from Exonerate_protein2genome CAGGACCGAGTGGTAAGACGCAGAGGCCGG---CTCCAGCGCAG atgattcttctctactccttacctggcaagaacgcatctccctgtcccagGAAGACCGTGTGGTGAGACGAAAGGGTCGTCTCCTCCAGCGCAGgtaaaaatttctccttttatatatggcttgtcaaagctcagaagaggtag Alignment from Exonerate_coding2genome atgattcttctctactccttacctggcaagaacgcatctccctgtcccaggaagaccgtgtggtgagacgaaagggtcgtctcctccagcgcaggtaaaaatttctccttttatatatggcttgtcaaagctcagaagaggtag Alignment from GeneWise atgattcttctctactccttacctggcaagaacgcatctccctgtcccaggaagaccgtgtggtgagacgaaagggtcgtctcctccagcgcaggtaaaaatttctccttttatatatggcttgtcaaagctcagaagaggtag #### Stambpl1_ID6895_3 --> 1 - 0 Original Alignment gTTATTTGTAGAAAAACTTCCCAGCCACCGAGATTACCAGCAGTGTGCAGTTCCAGAGAAGCAGGATATTATGAAG ctcaagctgtttgtgtgggtttactaagtttcatccaatcttttccacaggTTGTTTGTAAAAAAACTCCCAAGTCACCGAGATTACCAGCAATGTGCAGTGCCAGAGAAACAGGACATTATGGAGgttagcaaaatcagcatactttcttaaaactgtacctgcctaaatgatgg Alignment from CESAR gTTATTTGTAGAAAAACTTCCCAGCCACCGAGATTACCAGCAGTGTGCAGTTCCAGAGAAGCAGGATATTATGAAG ctcaagctgtttgtgtgggtttactaagtttcatccaatcttttccacaggTTGTTTGTAAAAAAACTCCCAAGTCACCGAGATTACCAGCAATGTGCAGTGCCAGAGAAACAGGACATTATGGAGgttagcaaaatcagcatactttcttaaaactgtacctgcctaaatgatgg Alignment from Spaln_aa2Genome GTTATTTGTAGAAAAACTTCCCAGCCACCGAGATTACCAGCAGTGTGCAGTTCCAGAGAAGCAGGATATTATGAAG ctcaagctgtttgtgtgggtttactaagtttcatccaatcttttccacagGTTGTTTGTAAAAAAACTCCCAAGTCACCGAGATTACCAGCAATGTGCAGTGCCAGAGAAACAGGACATTATGGAGgttagcaaaatcagcatactttcttaaaactgtacctgcctaaatgatgg Alignment from Spaln_nt2Genome GTTATTTGTAGAAAAACTTCCCAGCCACCGAGATTACCAGCAGTGTGCAGTTCCAGAGAAGCAGGATATTATGAAG ctcaagctgtttgtgtgggtttactaagtttcatccaatcttttccacagGTTGTTTGTAAAAAAACTCCCAAGTCACCGAGATTACCAGCAATGTGCAGTGCCAGAGAAACAGGACATTATGGAGgttagcaaaatcagcatactttcttaaaactgtacctgcctaaatgatgg Alignment from Pairagon GTTATTTGTAGAAAAACTTCCCAGCCACCGAGATTACCAGCAGTGTGCAGTTCCAGAGAAGCAGGATATTATGAAG ctcaagctgtttgtgtgggtttactaagtttcatccaatcttttccacagGTTGTTTGTAAAAAAACTCCCAAGTCACCGAGATTACCAGCAATGTGCAGTGCCAGAGAAACAGGACATTATGGAGgttagcaaaatcagcatactttcttaaaactgtacctgcctaaatgatgg Alignment from Exonerate_protein2genome GTTATTTGTAGAAAAACTTCCCAGCCACCGAGATTACCAGCAGTGTGCAGTTCCAGAGAAGCAGGATATTATGAAG ctcaagctgtttgtgtgggtttactaagtttcatccaatcttttccacagGTTGTTTGTAAAAAAACTCCCAAGTCACCGAGATTACCAGCAATGTGCAGTGCCAGAGAAACAGGACATTATGGAGgttagcaaaatcagcatactttcttaaaactgtacctgcctaaatgatgg Alignment from Exonerate_coding2genome GTTATTTGTAGAAAAACTTCCCAGCCACCGAGATTACCAGCAGTGTGCAGTTCCAGAGAAGCAGGATATTATGAAG ctcaagctgtttgtgtgggtttactaagtttcatccaatcttttccacagGTTGTTTGTAAAAAAACTCCCAAGTCACCGAGATTACCAGCAATGTGCAGTGCCAGAGAAACAGGACATTATGGAGgttagcaaaatcagcatactttcttaaaactgtacctgcctaaatgatgg Alignment from GeneWise GTTATTTGTAGAAAAACTTCCCAGCCACCGAGATTACCAGCAGTGTGCAGTTCCAGAGAAGCAGGATATTATGAAG ctcaagctgtttgtgtgggtttactaagtttcatccaatcttttccacagGTTGTTTGTAAAAAAACTCCCAAGTCACCGAGATTACCAGCAATGTGCAGTGCCAGAGAAACAGGACATTATGGAGgttagcaaaatcagcatactttcttaaaactgtacctgcctaaatgatgg #### Stambpl1_ID6901_8 --> 0 - 2 Original Alignment ACACACCCCACGCAAACGGCATTCCTGTCCAGTGTGGATCTCCACACTCACTGCTCCTACCAGCTTATGTTGCCAGAGGCCATTGCCATTGTGTGTTCCCCAAAGCATAAAga ctggacaccctagcaattcaatagaaactctcaccttccattcccaacagACACACCCTACACAATCAGCATTTCTGTCCAGTCTGGATCTACACAGTTACTGTGCCTATCAGCTCATGTTGCCAGAGGCGAAGACTATAGTATGTTCCTCAAAGCATAGGgagtgaggggtgcagaacaatatgctgtagtccaaacagataacataacaga Alignment from CESAR ACACACCCCACGCAAACGGCATTCCTGTCCAGTGTGGATCTCCACACTCACTGCTCCTACCAGCTTATGTTGCCAGAGGCCATTGCCATTGTGTGTTCCCCAAAGCATAAAga ctggacaccctagcaattcaatagaaactctcaccttccattcccaacagACACACCCTACACAATCAGCATTTCTGTCCAGTCTGGATCTACACAGTTACTGTGCCTATCAGCTCATGTTGCCAGAGGCGAAGACTATAGTATGTTCCTCAAAGCATAGGgagtgaggggtgcagaacaatatgctgtagtccaaacagataacataacaga Alignment from Spaln_aa2Genome ACACACCCCACGCAAACGGCATTCCTGTCCAGTGTGGATCTCCACACTCACTGCTCCTACCAGCTTATGTTGCCAGAGGCCATTGCCATTGTGTGTTCCCCAAAGCATAAAGA ctggacaccctagcaattcaatagaaactctcaccttccattcccaacagACACACCCTACACAATCAGCATTTCTGTCCAGTCTGGATCTACACAGTTACTGTGCCTATCAGCTCATGTTGCCAGAGGCGAAGACTATAGTATGTTCCTCAAAGCATAGGGAgtgaggggtgcagaacaatatgctgtagtccaaacagataacataacaga Alignment from Spaln_nt2Genome ACACACCCCACGCAAACGGCATTCCTGTCCAGTGTGGATCTCCACACTCACTGCTCCTACCAGCTTATGTTGCCAGAGGCCATTGCCATTGTGTGTTCCCCAAAGCATAAAGA ctggacaccctagcaattcaatagaaactctcaccttccattcccaacagACACACCCTACACAATCAGCATTTCTGTCCAGTCTGGATCTACACAGTTACTGTGCCTATCAGCTCATGTTGCCAGAGGCGAAGACTATAGTATGTTCCTCAAAGCATAGGGAgtgaggggtgcagaacaatatgctgtagtccaaacagataacataacaga Alignment from Pairagon ACACACCCCACGCAAACGGCATTCCTGTCCAGTGTGGATCTCCACACTCACTGCTCCTACCAGCTTATGTTGCCAGAGGCCATTGCCATTGTGTGTTCCCCAAAGCATAAAGA ctggacaccctagcaattcaatagaaactctcaccttccattcccaacagACACACCCTACACAATCAGCATTTCTGTCCAGTCTGGATCTACACAGTTACTGTGCCTATCAGCTCATGTTGCCAGAGGCGAAGACTATAGTATGTTCCTCAAAGCATAGGGAgtgaggggtgcagaacaatatgctgtagtccaaacagataacataacaga Alignment from Exonerate_protein2genome ACACACCCCACGCAAACGGCATTCCTGTCCAGTGTGGATCTCCACACTCACTGCTCCTACCAGCTTATGTTGCCAGAGGCCATTGCCATTGTGTGTTCCCCAAAGCATAAAGA ctggacaccctagcaattcaatagaaactctcaccttccattcccaacagACACACCCTACACAATCAGCATTTCTGTCCAGTCTGGATCTACACAGTTACTGTGCCTATCAGCTCATGTTGCCAGAGGCGAAGACTATAGTATGTTCCTCAAAGCATAGGGAgtgaggggtgcagaacaatatgctgtagtccaaacagataacataacaga Alignment from Exonerate_coding2genome ACACACCCCACGCAAACGGCATTCCTGTCCAGTGTGGATCTCCACACTCACTGCTCCTACCAGCTTATGTTGCCAGAGGCCATTGCCATTGTGTGTTCCCCAAAGCATAAAGA ctggacaccctagcaattcaatagaaactctcaccttccattcccaacagACACACCCTACACAATCAGCATTTCTGTCCAGTCTGGATCTACACAGTTACTGTGCCTATCAGCTCATGTTGCCAGAGGCGAAGACTATAGTATGTTCCTCAAAGCATAGGGAgtgaggggtgcagaacaatatgctgtagtccaaacagataacataacaga Alignment from GeneWise ACACACCCCACGCAAACGGCATTCCTGTCCAGTGTGGATCTCCACACTCACTGCTCCTACCAGCTTATGTTGCCAGAGGCCATTGCCATTGTGTGTTCCCCAAAGCATAAAGA ctggacaccctagcaattcaatagaaactctcaccttccattcccaacagACACACCCTACACAATCAGCATTTCTGTCCAGTCTGGATCTACACAGTTACTGTGCCTATCAGCTCATGTTGCCAGAGGCGAAGACTATAGTATGTTCCTCAAAGCATAGGGAgtgaggggtgcagaacaatatgctgtagtccaaacagataacataacaga #### Stip1_ID1991_10 --> 2 - 0 Original Alignment ggGACTACCCCCAAGCCATGAAGCACTATACAGAAGCCATTAAAAGGAACCCGAGAGATGCCAAACTGTACAGCAACCGAGCTGCCTGCTACACCAAGCTCCTGGAGTTTCAGCTGGCACTCAAG tacccccttttgtgagctgtagctcagagttactttttcctcctttatagggGACTACCCACAAGCTATGAAGCATTACACAGAAACAACTAAAAGGAACCCAAGGGATTCAAAGCTTTATACCAACCGAGCTGCCTGCTATACCAAACTCTTGGAGTTCCAGCTTGCGCTAAAAgtaagccctataggtctggtgggactatctgagtcaaagtggataaagac Alignment from CESAR ggGACTACCCCCAAGCCATGAAGCACTATACAGAAGCCATTAAAAGGAACCCGAGAGATGCCAAACTGTACAGCAACCGAGCTGCCTGCTACACCAAGCTCCTGGAGTTTCAGCTGGCACTCAAG tacccccttttgtgagctgtagctcagagttactttttcctcctttatagggGACTACCCACAAGCTATGAAGCATTACACAGAAACAACTAAAAGGAACCCAAGGGATTCAAAGCTTTATACCAACCGAGCTGCCTGCTATACCAAACTCTTGGAGTTCCAGCTTGCGCTAAAAgtaagccctataggtctggtgggactatctgagtcaaagtggataaagac Alignment from Spaln_aa2Genome GGGACTACCCCCAAGCCATGAAGCACTATACAGAAGCCATTAAAAGGAACCCGAGAGATGCCAAACTGTACAGCAACCGAGCTGCCTGCTACACCAAGCTCCTGGAGTTTCAGCTGGCACTCAAG tacccccttttgtgagctgtagctcagagttactttttcctcctttatagGGGACTACCCACAAGCTATGAAGCATTACACAGAAACAACTAAAAGGAACCCAAGGGATTCAAAGCTTTATACCAACCGAGCTGCCTGCTATACCAAACTCTTGGAGTTCCAGCTTGCGCTAAAAgtaagccctataggtctggtgggactatctgagtcaaagtggataaagac Alignment from Spaln_nt2Genome GGGACTACCCCCAAGCCATGAAGCACTATACAGAAGCCATTAAAAGGAACCCGAGAGATGCCAAACTGTACAGCAACCGAGCTGCCTGCTACACCAAGCTCCTGGAGTTTCAGCTGGCACTCAAG tacccccttttgtgagctgtagctcagagttactttttcctcctttatagGGGACTACCCACAAGCTATGAAGCATTACACAGAAACAACTAAAAGGAACCCAAGGGATTCAAAGCTTTATACCAACCGAGCTGCCTGCTATACCAAACTCTTGGAGTTCCAGCTTGCGCTAAAAgtaagccctataggtctggtgggactatctgagtcaaagtggataaagac Alignment from Pairagon GGGACTACCCCCAAGCCATGAAGCACTATACAGAAGCCATTAAAAGGAACCCGAGAGATGCCAAACTGTACAGCAACCGAGCTGCCTGCTACACCAAGCTCCTGGAGTTTCAGCTGGCACTCAAG tacccccttttgtgagctgtagctcagagttactttttcctcctttatagGGGACTACCCACAAGCTATGAAGCATTACACAGAAACAACTAAAAGGAACCCAAGGGATTCAAAGCTTTATACCAACCGAGCTGCCTGCTATACCAAACTCTTGGAGTTCCAGCTTGCGCTAAAAgtaagccctataggtctggtgggactatctgagtcaaagtggataaagac Alignment from Exonerate_protein2genome GGGACTACCCCCAAGCCATGAAGCACTATACAGAAGCCATTAAAAGGAACCCGAGAGATGCCAAACTGTACAGCAACCGAGCTGCCTGCTACACCAAGCTCCTGGAGTTTCAGCTGGCACTCAAG tacccccttttgtgagctgtagctcagagttactttttcctcctttatagGGGACTACCCACAAGCTATGAAGCATTACACAGAAACAACTAAAAGGAACCCAAGGGATTCAAAGCTTTATACCAACCGAGCTGCCTGCTATACCAAACTCTTGGAGTTCCAGCTTGCGCTAAAAgtaagccctataggtctggtgggactatctgagtcaaagtggataaagac Alignment from Exonerate_coding2genome GGGACTACCCCCAAGCCATGAAGCACTATACAGAAGCCATTAAAAGGAACCCGAGAGATGCCAAACTGTACAGCAACCGAGCTGCCTGCTACACCAAGCTCCTGGAGTTTCAGCTGGCACTCAAG tacccccttttgtgagctgtagctcagagttactttttcctcctttatagGGGACTACCCACAAGCTATGAAGCATTACACAGAAACAACTAAAAGGAACCCAAGGGATTCAAAGCTTTATACCAACCGAGCTGCCTGCTATACCAAACTCTTGGAGTTCCAGCTTGCGCTAAAAgtaagccctataggtctggtgggactatctgagtcaaagtggataaagac Alignment from GeneWise GGGACTACCCCCAAGCCATGAAGCACTATACAGAAGCCATTAAAAGGAACCCGAGAGATGCCAAACTGTACAGCAACCGAGCTGCCTGCTACACCAAGCTCCTGGAGTTTCAGCTGGCACTCAAG tacccccttttgtgagctgtagctcagagttactttttcctcctttatagGGGACTACCCACAAGCTATGAAGCATTACACAGAAACAACTAAAAGGAACCCAAGGGATTCAAAGCTTTATACCAACCGAGCTGCCTGCTATACCAAACTCTTGGAGTTCCAGCTTGCGCTAAAAgtaagccctataggtctggtgggactatctgagtcaaagtggataaagac #### Stip1_ID1992_9 --> 0 - 1 Original Alignment GCAGAGAAAATTCTGAAGGAACAGGAGCGCTTGGCTTATATCAACCCTGACTTGGCTTTGGAGGAGAAGAACAAGGGCAACGAATGCTTCCAGAAAg gtaatgcttactgtactactgattcacttgcaggctttgaaatctttcagGCAGAGAAAATTCTAAGAGAACAGGAACGCCTGGCTTATCTGAATCCGGATTTGACATTGGAAGAGAGTAACAAAAGCAATGAGTGCTTCCAGAAGggtgtgacatggagaattgaaaggtcacaaatacaggtatagcatgtggct Alignment from CESAR GCAGAGAAAATTCTGAAGGAACAGGAGCGCTTGGCTTATATCAACCCTGACTTGGCTTTGGAGGAGAAGAACAAGGGCAACGAATGCTTCCAGAAAg gtaatgcttactgtactactgattcacttgcaggctttgaaatctttcagGCAGAGAAAATTCTAAGAGAACAGGAACGCCTGGCTTATCTGAATCCGGATTTGACATTGGAAGAGAGTAACAAAAGCAATGAGTGCTTCCAGAAGggtgtgacatggagaattgaaaggtcacaaatacaggtatagcatgtggct Alignment from Spaln_aa2Genome GCAGAGAAAATTCTGAAGGAACAGGAGCGCTTGGCTTATATCAACCCTGACTTGGCTTTGGAGGAGAAGAACAAGGGCAACGAATGCTTCCAGAAAG gtaatgcttactgtactactgattcacttgcaggctttgaaatctttcagGCAGAGAAAATTCTAAGAGAACAGGAACGCCTGGCTTATCTGAATCCGGATTTGACATTGGAAGAGAGTAACAAAAGCAATGAGTGCTTCCAGAAGGgtgtgacatggagaattgaaaggtcacaaatacaggtatagcatgtggct Alignment from Spaln_nt2Genome GCAGAGAAAATTCTGAAGGAACAGGAGCGCTTGGCTTATATCAACCCTGACTTGGCTTTGGAGGAGAAGAACAAGGGCAACGAATGCTTCCAGAAAG gtaatgcttactgtactactgattcacttgcaggctttgaaatctttcagGCAGAGAAAATTCTAAGAGAACAGGAACGCCTGGCTTATCTGAATCCGGATTTGACATTGGAAGAGAGTAACAAAAGCAATGAGTGCTTCCAGAAGGgtgtgacatggagaattgaaaggtcacaaatacaggtatagcatgtggct Alignment from Pairagon GCAGAGAAAATTCTGAAGGAACAGGAGCGCTTGGCTTATATCAACCCTGACTTGGCTTTGGAGGAGAAGAACAAGGGCAACGAATGCTTCCAGAAAG gtaatgcttactgtactactgattcacttgcaggctttgaaatctttcagGCAGAGAAAATTCTAAGAGAACAGGAACGCCTGGCTTATCTGAATCCGGATTTGACATTGGAAGAGAGTAACAAAAGCAATGAGTGCTTCCAGAAGGgtgtgacatggagaattgaaaggtcacaaatacaggtatagcatgtggct Alignment from Exonerate_protein2genome GCAGAGAAAATTCTGAAGGAACAGGAGCGCTTGGCTTATATCAACCCTGACTTGGCTTTGGAGGAGAAGAACAAGGGCAACGAATGCTTCCAGAAAG gtaatgcttactgtactactgattcacttgcaggctttgaaatctttcagGCAGAGAAAATTCTAAGAGAACAGGAACGCCTGGCTTATCTGAATCCGGATTTGACATTGGAAGAGAGTAACAAAAGCAATGAGTGCTTCCAGAAGGgtgtgacatggagaattgaaaggtcacaaatacaggtatagcatgtggct Alignment from Exonerate_coding2genome GCAGAGAAAATTCTGAAGGAACAGGAGCGCTTGGCTTATATCAACCCTGACTTGGCTTTGGAGGAGAAGAACAAGGGCAACGAATGCTTCCAGAAAG gtaatgcttactgtactactgattcacttgcaggctttgaaatctttcagGCAGAGAAAATTCTAAGAGAACAGGAACGCCTGGCTTATCTGAATCCGGATTTGACATTGGAAGAGAGTAACAAAAGCAATGAGTGCTTCCAGAAGGgtgtgacatggagaattgaaaggtcacaaatacaggtatagcatgtggct Alignment from GeneWise GCAGAGAAAATTCTGAAGGAACAGGAGCGCTTGGCTTATATCAACCCTGACTTGGCTTTGGAGGAGAAGAACAAGGGCAACGAATGCTTCCAGAAAG gtaatgcttactgtactactgattcacttgcaggctttgaaatctttcagGCAGAGAAAATTCTAAGAGAACAGGAACGCCTGGCTTATCTGAATCCGGATTTGACATTGGAAGAGAGTAACAAAAGCAATGAGTGCTTCCAGAAGGgtgtgacatggagaattgaaaggtcacaaatacaggtatagcatgtggct #### Stip1_ID1993_8 --> 1 - 0 Original Alignment aGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG caggctgctggaacttgctcctaacactactttcctttgcttttctatagaGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtcaggatgtgaagattgtgcctctcccaatggccttcacatggctggag Alignment from CESAR aGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG caggctgctggaacttgctcctaacactactttcctttgcttttctatagaGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtcaggatgtgaagattgtgcctctcccaatggccttcacatggctggag Alignment from Spaln_aa2Genome AGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG caggctgctggaacttgctcctaacactactttcctttgcttttctatagAGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtcaggatgtgaagattgtgcctctcccaatggccttcacatggctggag Alignment from Spaln_nt2Genome AGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG caggctgctggaacttgctcctaacactactttcctttgcttttctatagAGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtcaggatgtgaagattgtgcctctcccaatggccttcacatggctggag Alignment from Pairagon AGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG caggctgctggaacttgctcctaacactactttcctttgcttttctatagAGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtcaggatgtgaagattgtgcctctcccaatggccttcacatggctggag Alignment from Exonerate_protein2genome AGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG caggctgctggaacttgctcctaacactactttcctttgcttttctatagAGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtcaggatgtgaagattgtgcctctcccaatggccttcacatggctggag Alignment from Exonerate_coding2genome AGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG caggctgctggaacttgctcctaacactactttcctttgcttttctatagAGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtcaggatgtgaagattgtgcctctcccaatggccttcacatggctggag Alignment from GeneWise AGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG caggctgctggaacttgctcctaacactactttcctttgcttttctatagAGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtcaggatgtgaagattgtgcctctcccaatggccttcacatggctggag #### Stip1_ID1997_4 --> 2 - 2 Original Alignment agAGGAAATTCATGAATCCATTCAACTTGCCTAATCTATACCAAAAGTTGGAAAACGACCCCAGGACAAGGTCGCTGCTCAGTGACCCCACCTACAGGGAGCTCATAGAACAGCTGCAGAACAAGCCGTCAGACCTGGGCac tttgtcaactagccacatgacccatatcgctttccttttttttttttaagagAGGAAATTCATGAATCCATTTAACCTGCCAAACCTATATCAAAAGTTGGAAAATGACCCAAGGGCAAGGTCACTGCTGAGTGACCCTGCCTACCGAGAGCTCATAGAACAGCTGCAAAACAAGCCATCTGACTTGGGCacgtcagccgatgatgcatcttaggagaactactcgcaggatccgaggtctc Alignment from CESAR agAGGAAATTCATGAATCCATTCAACTTGCCTAATCTATACCAAAAGTTGGAAAACGACCCCAGGACAAGGTCGCTGCTCAGTGACCCCACCTACAGGGAGCTCATAGAACAGCTGCAGAACAAGCCGTCAGACCTGGGCac tttgtcaactagccacatgacccatatcgctttccttttttttttttaagagAGGAAATTCATGAATCCATTTAACCTGCCAAACCTATATCAAAAGTTGGAAAATGACCCAAGGGCAAGGTCACTGCTGAGTGACCCTGCCTACCGAGAGCTCATAGAACAGCTGCAAAACAAGCCATCTGACTTGGGCacgtcagccgatgatgcatcttaggagaactactcgcaggatccgaggtctc Alignment from Spaln_aa2Genome AGAGGAAATTCATGAATCCATTCAACTTGCCTAATCTATACCAAAAGTTGGAAAACGACCCCAGGACAAGGTCGCTGCTCAGTGACCCCACCTACAGGGAGCTCATAGAACAGCTGCAGAACAAGCCGTCAGACCTGGGCAC tttgtcaactagccacatgacccatatcgctttccttttttttttttaagAGAGGAAATTCATGAATCCATTTAACCTGCCAAACCTATATCAAAAGTTGGAAAATGACCCAAGGGCAAGGTCACTGCTGAGTGACCCTGCCTACCGAGAGCTCATAGAACAGCTGCAAAACAAGCCATCTGACTTGGGCACgtcagccgatgatgcatcttaggagaactactcgcaggatccgaggtctc Alignment from Spaln_nt2Genome AGAGGAAATTCATGAATCCATTCAACTTGCCTAATCTATACCAAAAGTTGGAAAACGACCCCAGGACAAGGTCGCTGCTCAGTGACCCCACCTACAGGGAGCTCATAGAACAGCTGCAGAACAAGCCGTCAGACCTGGGCAC tttgtcaactagccacatgacccatatcgctttccttttttttttttaagAGAGGAAATTCATGAATCCATTTAACCTGCCAAACCTATATCAAAAGTTGGAAAATGACCCAAGGGCAAGGTCACTGCTGAGTGACCCTGCCTACCGAGAGCTCATAGAACAGCTGCAAAACAAGCCATCTGACTTGGGCACgtcagccgatgatgcatcttaggagaactactcgcaggatccgaggtctc Alignment from Pairagon AGAGGAAATTCATGAATCCATTCAACTTGCCTAATCTATACCAAAAGTTGGAAAACGACCCCAGGACAAGGTCGCTGCTCAGTGACCCCACCTACAGGGAGCTCATAGAACAGCTGCAGAACAAGCCGTCAGACCTGGGCAC tttgtcaactagccacatgacccatatcgctttccttttttttttttaagAGAGGAAATTCATGAATCCATTTAACCTGCCAAACCTATATCAAAAGTTGGAAAATGACCCAAGGGCAAGGTCACTGCTGAGTGACCCTGCCTACCGAGAGCTCATAGAACAGCTGCAAAACAAGCCATCTGACTTGGGCACgtcagccgatgatgcatcttaggagaactactcgcaggatccgaggtctc Alignment from Exonerate_protein2genome AGAGGAAATTCATGAATCCATTCAACTTGCCTAATCTATACCAAAAGTTGGAAAACGACCCCAGGACAAGGTCGCTGCTCAGTGACCCCACCTACAGGGAGCTCATAGAACAGCTGCAGAACAAGCCGTCAGACCTGGGCAC tttgtcaactagccacatgacccatatcgctttccttttttttttttaagAGAGGAAATTCATGAATCCATTTAACCTGCCAAACCTATATCAAAAGTTGGAAAATGACCCAAGGGCAAGGTCACTGCTGAGTGACCCTGCCTACCGAGAGCTCATAGAACAGCTGCAAAACAAGCCATCTGACTTGGGCACgtcagccgatgatgcatcttaggagaactactcgcaggatccgaggtctc Alignment from Exonerate_coding2genome AGAGGAAATTCATGAATCCATTCAACTTGCCTAATCTATACCAAAAGTTGGAAAACGACCCCAGGACAAGGTCGCTGCTCAGTGACCCCACCTACAGGGAGCTCATAGAACAGCTGCAGAACAAGCCGTCAGACCTGGGCAC tttgtcaactagccacatgacccatatcgctttccttttttttttttaagAGAGGAAATTCATGAATCCATTTAACCTGCCAAACCTATATCAAAAGTTGGAAAATGACCCAAGGGCAAGGTCACTGCTGAGTGACCCTGCCTACCGAGAGCTCATAGAACAGCTGCAAAACAAGCCATCTGACTTGGGCACgtcagccgatgatgcatcttaggagaactactcgcaggatccgaggtctc Alignment from GeneWise AGAGGAAATTCATGAATCCATTCAACTTGCCTAATCTATACCAAAAGTTGGAAAACGACCCCAGGACAAGGTCGCTGCTCAGTGACCCCACCTACAGGGAGCTCATAGAACAGCTGCAGAACAAGCCGTCAGACCTGGGCAC tttgtcaactagccacatgacccatatcgctttccttttttttttttaagAGAGGAAATTCATGAATCCATTTAACCTGCCAAACCTATATCAAAAGTTGGAAAATGACCCAAGGGCAAGGTCACTGCTGAGTGACCCTGCCTACCGAGAGCTCATAGAACAGCTGCAAAACAAGCCATCTGACTTGGGCACgtcagccgatgatgcatcttaggagaactactcgcaggatccgaggtctc #### Stx5a_ID2330_2 --> 0 - 2 Original Alignment AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCag ggggggctcaaagatgactgactatatcgatagtctttcatctcttgcagAATGGAATCCAAACAACCAAA---CCTCTTCATGCAGCCCGTCAGTGCAGTGAACTTACCCTTATGGCTaggtaagttgtaggtgtcttgatgggtggactttttgtaatatgtagagtca Alignment from CESAR AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCag ggggggctcaaagatgactgactatatcgatagtctttcatctcttgcagAATGGAATCCAAACAACCAAACCT---CTTCATGCAGCCCGTCAGTGCAGTGAACTTACCCTTATGGCTaggtaagttgtaggtgtcttgatgggtggactttttgtaatatgtagagtca Alignment from Spaln_aa2Genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG ggggggctcaaagatgactgactatatcgatagtctttcatctcttgcagAATGGAATCCAAACAACCAAACCT---CTTCATGCAGCCCGTCAGTGCAGTGAACTTACCCTTATGGCTAGgtaagttgtaggtgtcttgatgggtggactttttgtaatatgtagagtca Alignment from Spaln_nt2Genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG ggggggctcaaagatgactgactatatcgatagtctttcatctcttgcagAATGGAATCCAAACAACCAAAC---CTCTTCATGCAGCCCGTCAGTGCAGTGAACTTACCCTTATGGCTAGgtaagttgtaggtgtcttgatgggtggactttttgtaatatgtagagtca Alignment from Pairagon AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG ggggggctcaaagatgactgactatatcgatagtctttcatctcttgcagAATGGAATCCAAACAACCAAAC---CTCTTCATGCAGCCCGTCAGTGCAGTGAACTTACCCTTATGGCTAGgtaagttgtaggtgtcttgatgggtggactttttgtaatatgtagagtca Alignment from Exonerate_protein2genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG ggggggctcaaagatgactgactatatcgatagtctttcatctcttgcagAATGGAATCCAAACAACCAAACCT---CTTCATGCAGCCCGTCAGTGCAGTGAACTTACCCTTATGGCTAGgtaagttgtaggtgtcttgatgggtggactttttgtaatatgtagagtca Alignment from Exonerate_coding2genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG ggggggctcaaagatgactgactatatcgatagtctttcatctcttgcagAATGGAATCCAAACAACCAAACCT---CTTCATGCAGCCCGTCAGTGCAGTGAACTTACCCTTATGGCTAGgtaagttgtaggtgtcttgatgggtggactttttgtaatatgtagagtca Alignment from GeneWise AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG ggggggctcaaagatgactgactatatcgatagtctttcatctcttgcagAATGGAATCCAAACAACCAAACCT---CTTCATGCAGCCCGTCAGTGCAGTGAACTTACCCTTATGGCTAGgtaagttgtaggtgtcttgatgggtggactttttgtaatatgtagagtca #### Stx5a_ID2335_7 --> 0 - 1 Original Alignment AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTg ccatgcacaaatgttcacagagccttgggttttcatttcctacctcccagAATTTAAAACAGCAGAGGAATCGA---GCCCAGCTATCCAGGGCCCCAGTGTCTGCCTTTCCATTAGCACCCAACAACCTTggtaaggttgccttatttttgtatagggggtctgatctgacctgctttcaa Alignment from CESAR AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTg ccatgcacaaatgttcacagagccttgggttttcatttcctacctcccagAATTTAAAACAGCAGAGGAATCGA---GCCCAGCTATCCAGGGCCCCAGTGTCTGCCTTTCCATTAGCACCCAACAACCTTggtaaggttgccttatttttgtatagggggtctgatctgacctgctttcaa Alignment from Spaln_aa2Genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG ccatgcacaaatgttcacagagccttgggttttcatttcctacctcccagAATTTAAAACAGCAGAGGAAT---CGAGCCCAGCTATCCAGGGCCCCAGTGTCTGCCTTTCCATTAGCACCCAACAACCTTGgtaaggttgccttatttttgtatagggggtctgatctgacctgctttcaa Alignment from Spaln_nt2Genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG ccatgcacaaatgttcacagagccttgggttttcatttcctacctcccagAATTTAAAACAGCAGAGGAA---TCGAGCCCAGCTATCCAGGGCCCCAGTGTCTGCCTTTCCATTAGCACCCAACAACCTTGgtaaggttgccttatttttgtatagggggtctgatctgacctgctttcaa Alignment from Pairagon AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG ccatgcacaaatgttcacagagccttgggttttcatttcctacctcccagAATTTAAAACAGCAGAGGAA---TCGAGCCCAGCTATCCAGGGCCCCAGTGTCTGCCTTTCCATTAGCACCCAACAACCTTGgtaaggttgccttatttttgtatagggggtctgatctgacctgctttcaa Alignment from Exonerate_protein2genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG ccatgcacaaatgttcacagagccttgggttttcatttcctacctcccagAATTTAAAACAGCAGAGGAAT---CGAGCCCAGCTATCCAGGGCCCCAGTGTCTGCCTTTCCATTAGCACCCAACAACCTTGgtaaggttgccttatttttgtatagggggtctgatctgacctgctttcaa Alignment from Exonerate_coding2genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG ccatgcacaaatgttcacagagccttgggttttcatttcctacctcccagAATTTAAAACAGCAGAGGAAT---CGAGCCCAGCTATCCAGGGCCCCAGTGTCTGCCTTTCCATTAGCACCCAACAACCTTGgtaaggttgccttatttttgtatagggggtctgatctgacctgctttcaa Alignment from GeneWise AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCAGCCCTGCCTCTTGCCCCCAACAACCTTG ccatgcacaaatgttcacagagccttgggttttcatttcctacctcccagAATTTAAAACAGCAGAGGAATCGAGCC---CAGCTATCCAGGGCCCCAGTGTCTGCCTTTCCATTAGCACCCAACAACCTTGgtaaggttgccttatttttgtatagggggtctgatctgacctgctttcaa #### Sufu_ID9887_2 --> 1 - 2 Original Alignment gTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATga tgttaaaccttggcttaccttttgttgctcttttttctccccatctctaggTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGCCCCTCTGCCAACATACCTGAGCATTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATgagtaaggtttccccctcttaatggccagccttattgcttttgtaagggtct Alignment from CESAR gTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATga tgttaaaccttggcttaccttttgttgctcttttttctccccatctctaggTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGCCCCTCTGCCAACATACCTGAGCATTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATgagtaaggtttccccctcttaatggccagccttattgcttttgtaagggtct Alignment from Spaln_aa2Genome GTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGA tgttaaaccttggcttaccttttgttgctcttttttctccccatctctagGTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGCCCCTCTGCCAACATACCTGAGCATTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGAgtaaggtttccccctcttaatggccagccttattgcttttgtaagggtct Alignment from Spaln_nt2Genome GTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGA tgttaaaccttggcttaccttttgttgctcttttttctccccatctctagGTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGCCCCTCTGCCAACATACCTGAGCATTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGAgtaaggtttccccctcttaatggccagccttattgcttttgtaagggtct Alignment from Pairagon GTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGA tgttaaaccttggcttaccttttgttgctcttttttctccccatctctagGTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGCCCCTCTGCCAACATACCTGAGCATTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGAgtaaggtttccccctcttaatggccagccttattgcttttgtaagggtct Alignment from Exonerate_protein2genome GTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGA tgttaaaccttggcttaccttttgttgctcttttttctccccatctctagGTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGCCCCTCTGCCAACATACCTGAGCATTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGAgtaaggtttccccctcttaatggccagccttattgcttttgtaagggtct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGA tgttaaaccttggcttaccttttgttgctcttttttctccccatctctagGTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGCCCCTCTGCCAACATACCTGAGCATTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGAgtaaggtttccccctcttaatggccagccttattgcttttgtaagggtct #### Sufu_ID9897_5 --> 0 - 2 Original Alignment ATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCat ttgcccatacagggggagccacaaaacaagattttttttcttctgtgcagATTGTTGGTGTCTGCACTGAGGAGTTACATTCCACACAACAGTGGAAA---CAAGGAGTACTGCAACTAATACGGCCAGTACCCatgtagccttgagttggagatgtggagcataggtaatacaaaagatatgtgg Alignment from CESAR ATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCat ttgcccatacagggggagccacaaaacaagattttttttcttctgtgcagATTGTTGGTGTCTGCACTGAGGAGTTACATTCCACACAACAGTGGAAA---CAAGGAGTACTGCAACTAATACGGCCAGTACCCatgtagccttgagttggagatgtggagcataggtaatacaaaagatatgtgg Alignment from Spaln_aa2Genome ATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCAT ttgcccatacagggggagccacaaaacaagattttttttcttctgtgcagATTGTTGGTGTCTGCACTGAGGAGTTACATTCCACACAACAGTGGAAA---CAAGGAGTACTGCAACTAATACGGCCAGTACCCATgtagccttgagttggagatgtggagcataggtaatacaaaagatatgtgg Alignment from Spaln_nt2Genome ATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCAT ttgcccatacagggggagccacaaaacaagattttttttcttctgtgcagATTGTTGGTGTCTGCACTGAGGAGTTACATTCCACACAACAGTGGAA---ACAAGGAGTACTGCAACTAATACGGCCAGTACCCATgtagccttgagttggagatgtggagcataggtaatacaaaagatatgtgg Alignment from Pairagon ATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCAT ttgcccatacagggggagccacaaaacaagattttttttcttctgtgcagATTGTTGGTGTCTGCACTGAGGAGTTACATTCCACACAACAGTGGAA---ACAAGGAGTACTGCAACTAATACGGCCAGTACCCATgtagccttgagttggagatgtggagcataggtaatacaaaagatatgtgg Alignment from Exonerate_protein2genome ATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCAT ttgcccatacagggggagccacaaaacaagattttttttcttctgtgcagATTGTTGGTGTCTGCACTGAGGAGTTACATTCCACACAACAGTGGAAA---CAAGGAGTACTGCAACTAATACGGCCAGTACCCATgtagccttgagttggagatgtggagcataggtaatacaaaagatatgtgg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCAT ttgcccatacagggggagccacaaaacaagattttttttcttctgtgcagATTGTTGGTGTCTGCACTGAGGAGTTACATTCCACACAACAGTGGAAA---CAAGGAGTACTGCAACTAATACGGCCAGTACCCATgtagccttgagttggagatgtggagcataggtaatacaaaagatatgtgg #### Sufu_ID9908_9 --> 1 - 2 Original Alignment gAGCCGCAAGGACAGTTTGGGCAGCGACAGCTCCACGGCCATCATCCCCCACGAGCTGATCCGCACACGGCAGCTCGAGAGCGTGCATCTAAAATTTAACCAAGAGTCGGGAGCCCTCATCCCTCTCTGCCTAag ctgcatgcaataattaattcccataataggaaaactatttgattttgtaggAGTCACAAAGACAGCTTAGGCAGTGACAGCTCTACGGCCATCATCCCTCATGAGCTCCTCCGCACACAGCAGTTAGAGAGTGTGCATCTAAAGTTCAATCAAGAATCAGCAGCCCTCATCTCTCTCTGTCTAaggtaagatagcaccgagacaaggtgggcttgcatgactctgatgaacacaa Alignment from CESAR gAGCCGCAAGGACAGTTTGGGCAGCGACAGCTCCACGGCCATCATCCCCCACGAGCTGATCCGCACACGGCAGCTCGAGAGCGTGCATCTAAAATTTAACCAAGAGTCGGGAGCCCTCATCCCTCTCTGCCTAag ctgcatgcaataattaattcccataataggaaaactatttgattttgtaggAGTCACAAAGACAGCTTAGGCAGTGACAGCTCTACGGCCATCATCCCTCATGAGCTCCTCCGCACACAGCAGTTAGAGAGTGTGCATCTAAAGTTCAATCAAGAATCAGCAGCCCTCATCTCTCTCTGTCTAaggtaagatagcaccgagacaaggtgggcttgcatgactctgatgaacacaa Alignment from Spaln_aa2Genome GAGCCGCAAGGACAGTTTGGGCAGCGACAGCTCCACGGCCATCATCCCCCACGAGCTGATCCGCACACGGCAGCTCGAGAGCGTGCATCTAAAATTTAACCAAGAGTCGGGAGCCCTCATCCCTCTCTGCCTAAG ctgcatgcaataattaattcccataataggaaaactatttgattttgtagGAGTCACAAAGACAGCTTAGGCAGTGACAGCTCTACGGCCATCATCCCTCATGAGCTCCTCCGCACACAGCAGTTAGAGAGTGTGCATCTAAAGTTCAATCAAGAATCAGCAGCCCTCATCTCTCTCTGTCTAAGgtaagatagcaccgagacaaggtgggcttgcatgactctgatgaacacaa Alignment from Spaln_nt2Genome GAGCCGCAAGGACAGTTTGGGCAGCGACAGCTCCACGGCCATCATCCCCCACGAGCTGATCCGCACACGGCAGCTCGAGAGCGTGCATCTAAAATTTAACCAAGAGTCGGGAGCCCTCATCCCTCTCTGCCTAAG ctgcatgcaataattaattcccataataggaaaactatttgattttgtagGAGTCACAAAGACAGCTTAGGCAGTGACAGCTCTACGGCCATCATCCCTCATGAGCTCCTCCGCACACAGCAGTTAGAGAGTGTGCATCTAAAGTTCAATCAAGAATCAGCAGCCCTCATCTCTCTCTGTCTAAGgtaagatagcaccgagacaaggtgggcttgcatgactctgatgaacacaa Alignment from Pairagon GAGCCGCAAGGACAGTTTGGGCAGCGACAGCTCCACGGCCATCATCCCCCACGAGCTGATCCGCACACGGCAGCTCGAGAGCGTGCATCTAAAATTTAACCAAGAGTCGGGAGCCCTCATCCCTCTCTGCCTAAG ctgcatgcaataattaattcccataataggaaaactatttgattttgtagGAGTCACAAAGACAGCTTAGGCAGTGACAGCTCTACGGCCATCATCCCTCATGAGCTCCTCCGCACACAGCAGTTAGAGAGTGTGCATCTAAAGTTCAATCAAGAATCAGCAGCCCTCATCTCTCTCTGTCTAAGgtaagatagcaccgagacaaggtgggcttgcatgactctgatgaacacaa Alignment from Exonerate_protein2genome GAGCCGCAAGGACAGTTTGGGCAGCGACAGCTCCACGGCCATCATCCCCCACGAGCTGATCCGCACACGGCAGCTCGAGAGCGTGCATCTAAAATTTAACCAAGAGTCGGGAGCCCTCATCCCTCTCTGCCTAAG ctgcatgcaataattaattcccataataggaaaactatttgattttgtagGAGTCACAAAGACAGCTTAGGCAGTGACAGCTCTACGGCCATCATCCCTCATGAGCTCCTCCGCACACAGCAGTTAGAGAGTGTGCATCTAAAGTTCAATCAAGAATCAGCAGCCCTCATCTCTCTCTGTCTAAGgtaagatagcaccgagacaaggtgggcttgcatgactctgatgaacacaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAGCCGCAAGGACAGTTTGGGCAGCGACAGCTCCACGGCCATCATCCCCCACGAGCTGATCCGCACACGGCAGCTCGAGAGCGTGCATCTAAAATTTAACCAAGAGTCGGGAGCCCTCATCCCTCTCTGCCTAAG ctgcatgcaataattaattcccataataggaaaactatttgattttgtagGAGTCACAAAGACAGCTTAGGCAGTGACAGCTCTACGGCCATCATCCCTCATGAGCTCCTCCGCACACAGCAGTTAGAGAGTGTGCATCTAAAGTTCAATCAAGAATCAGCAGCCCTCATCTCTCTCTGTCTAAGgtaagatagcaccgagacaaggtgggcttgcatgactctgatgaacacaa #### Suv420h1_ID142_4 --> 1 - 0 Original Alignment aTTTCGGCCTATAAAAGGAAGGCAAGAAGAGCTAAAGGAAGTAATTGAACGCTTTAAGAAAGATGAACACTTAGAGAAAGCTTTCAAATGTTTGACTTCTGGGGAATGGGCACGGCATTATTTTCTCAACAAAAACAAAATGCAGGAGAAATTATTCAAGGAACAT ggtttgtgggatcagaactggttgtgtgtgtgacatgagtctctcctcagaTTCCAGCCTATTAACGGAAGGCAAGAAGAGCTAAAGGAAGTCATTGAACACTTTAAGAAGGATCAACACTTAGAAAAAGCTTTCAAATGCTTAACTTCTGGTGAATGGGCACGCCATTATTTTCTCAACAAGAACAAAATGCAGGAGAAGTTATTCAAGGAGCATgtaagtaagtgttgctatgaaccctttacactggttatgtgagcctgggc Alignment from CESAR aTTTCGGCCTATAAAAGGAAGGCAAGAAGAGCTAAAGGAAGTAATTGAACGCTTTAAGAAAGATGAACACTTAGAGAAAGCTTTCAAATGTTTGACTTCTGGGGAATGGGCACGGCATTATTTTCTCAACAAAAACAAAATGCAGGAGAAATTATTCAAGGAACAT ggtttgtgggatcagaactggttgtgtgtgtgacatgagtctctcctcagaTTCCAGCCTATTAACGGAAGGCAAGAAGAGCTAAAGGAAGTCATTGAACACTTTAAGAAGGATCAACACTTAGAAAAAGCTTTCAAATGCTTAACTTCTGGTGAATGGGCACGCCATTATTTTCTCAACAAGAACAAAATGCAGGAGAAGTTATTCAAGGAGCATgtaagtaagtgttgctatgaaccctttacactggttatgtgagcctgggc Alignment from Spaln_aa2Genome ATTTCGGCCTATAAAAGGAAGGCAAGAAGAGCTAAAGGAAGTAATTGAACGCTTTAAGAAAGATGAACACTTAGAGAAAGCTTTCAAATGTTTGACTTCTGGGGAATGGGCACGGCATTATTTTCTCAACAAAAACAAAATGCAGGAGAAATTATTCAAGGAACAT ggtttgtgggatcagaactggttgtgtgtgtgacatgagtctctcctcagATTCCAGCCTATTAACGGAAGGCAAGAAGAGCTAAAGGAAGTCATTGAACACTTTAAGAAGGATCAACACTTAGAAAAAGCTTTCAAATGCTTAACTTCTGGTGAATGGGCACGCCATTATTTTCTCAACAAGAACAAAATGCAGGAGAAGTTATTCAAGGAGCATgtaagtaagtgttgctatgaaccctttacactggttatgtgagcctgggc Alignment from Spaln_nt2Genome ATTTCGGCCTATAAAAGGAAGGCAAGAAGAGCTAAAGGAAGTAATTGAACGCTTTAAGAAAGATGAACACTTAGAGAAAGCTTTCAAATGTTTGACTTCTGGGGAATGGGCACGGCATTATTTTCTCAACAAAAACAAAATGCAGGAGAAATTATTCAAGGAACAT ggtttgtgggatcagaactggttgtgtgtgtgacatgagtctctcctcagATTCCAGCCTATTAACGGAAGGCAAGAAGAGCTAAAGGAAGTCATTGAACACTTTAAGAAGGATCAACACTTAGAAAAAGCTTTCAAATGCTTAACTTCTGGTGAATGGGCACGCCATTATTTTCTCAACAAGAACAAAATGCAGGAGAAGTTATTCAAGGAGCATgtaagtaagtgttgctatgaaccctttacactggttatgtgagcctgggc Alignment from Pairagon ATTTCGGCCTATAAAAGGAAGGCAAGAAGAGCTAAAGGAAGTAATTGAACGCTTTAAGAAAGATGAACACTTAGAGAAAGCTTTCAAATGTTTGACTTCTGGGGAATGGGCACGGCATTATTTTCTCAACAAAAACAAAATGCAGGAGAAATTATTCAAGGAACAT ggtttgtgggatcagaactggttgtgtgtgtgacatgagtctctcctcagATTCCAGCCTATTAACGGAAGGCAAGAAGAGCTAAAGGAAGTCATTGAACACTTTAAGAAGGATCAACACTTAGAAAAAGCTTTCAAATGCTTAACTTCTGGTGAATGGGCACGCCATTATTTTCTCAACAAGAACAAAATGCAGGAGAAGTTATTCAAGGAGCATgtaagtaagtgttgctatgaaccctttacactggttatgtgagcctgggc Alignment from Exonerate_protein2genome ATTTCGGCCTATAAAAGGAAGGCAAGAAGAGCTAAAGGAAGTAATTGAACGCTTTAAGAAAGATGAACACTTAGAGAAAGCTTTCAAATGTTTGACTTCTGGGGAATGGGCACGGCATTATTTTCTCAACAAAAACAAAATGCAGGAGAAATTATTCAAGGAACAT ggtttgtgggatcagaactggttgtgtgtgtgacatgagtctctcctcagATTCCAGCCTATTAACGGAAGGCAAGAAGAGCTAAAGGAAGTCATTGAACACTTTAAGAAGGATCAACACTTAGAAAAAGCTTTCAAATGCTTAACTTCTGGTGAATGGGCACGCCATTATTTTCTCAACAAGAACAAAATGCAGGAGAAGTTATTCAAGGAGCATgtaagtaagtgttgctatgaaccctttacactggttatgtgagcctgggc Alignment from Exonerate_coding2genome ATTTCGGCCTATAAAAGGAAGGCAAGAAGAGCTAAAGGAAGTAATTGAACGCTTTAAGAAAGATGAACACTTAGAGAAAGCTTTCAAATGTTTGACTTCTGGGGAATGGGCACGGCATTATTTTCTCAACAAAAACAAAATGCAGGAGAAATTATTCAAGGAACAT ggtttgtgggatcagaactggttgtgtgtgtgacatgagtctctcctcagATTCCAGCCTATTAACGGAAGGCAAGAAGAGCTAAAGGAAGTCATTGAACACTTTAAGAAGGATCAACACTTAGAAAAAGCTTTCAAATGCTTAACTTCTGGTGAATGGGCACGCCATTATTTTCTCAACAAGAACAAAATGCAGGAGAAGTTATTCAAGGAGCATgtaagtaagtgttgctatgaaccctttacactggttatgtgagcctgggc Alignment from GeneWise ATTTCGGCCTATAAAAGGAAGGCAAGAAGAGCTAAAGGAAGTAATTGAACGCTTTAAGAAAGATGAACACTTAGAGAAAGCTTTCAAATGTTTGACTTCTGGGGAATGGGCACGGCATTATTTTCTCAACAAAAACAAAATGCAGGAGAAATTATTCAAGGAACAT ggtttgtgggatcagaactggttgtgtgtgtgacatgagtctctcctcagATTCCAGCCTATTAACGGAAGGCAAGAAGAGCTAAAGGAAGTCATTGAACACTTTAAGAAGGATCAACACTTAGAAAAAGCTTTCAAATGCTTAACTTCTGGTGAATGGGCACGCCATTATTTTCTCAACAAGAACAAAATGCAGGAGAAGTTATTCAAGGAGCATgtaagtaagtgttgctatgaaccctttacactggttatgtgagcctgggc #### Syt12_ID538_2 --> 2 - 0 Original Alignment tcATCAAGAGCCCCCCAGGCTGGGAGGTGGGTGTCTATGCTGCCGGGGCCCTGGCTCTGCTGGGAATTGCTGCTGTGAGTCTATGGAAGCTCTGGACATCGGGGAGCTTCCCCAGCCCCTCCCCGTTCCCTAATTACGACTACAGGTACCTGCAGCAGAAATATGGAGAGGCCTATGTGGAGGCTAAGCTGAAG accactctcccttatgcacagagagctgcacgccctcaccttgctaccagttATCAAGACCCCTCCAGGGTGGGAGGTGAAGGCCTACGCTGCTGGGGCCCTGTCTTTGCTGGGGATTGTAGCTGTGAGTTTATGGGAGCTTTGGGCATCAGGCAGCATCCCCAGTCCCTCCCTCTTTCCCAACTATGATTATCGGTTCCTACAACAGAGGTATGGAGAGGCATATGTGGAATCCAAGTTGAAGgtgagcgcttaagttaaatcagatcctccccaatgcaaattgaacagagg Alignment from CESAR tcATCAAGAGCCCCCCAGGCTGGGAGGTGGGTGTCTATGCTGCCGGGGCCCTGGCTCTGCTGGGAATTGCTGCTGTGAGTCTATGGAAGCTCTGGACATCGGGGAGCTTCCCCAGCCCCTCCCCGTTCCCTAATTACGACTACAGGTACCTGCAGCAGAAATATGGAGAGGCCTATGTGGAGGCTAAGCTGAAG accactctcccttatgcacagagagctgcacgccctcaccttgctaccagttATCAAGACCCCTCCAGGGTGGGAGGTGAAGGCCTACGCTGCTGGGGCCCTGTCTTTGCTGGGGATTGTAGCTGTGAGTTTATGGGAGCTTTGGGCATCAGGCAGCATCCCCAGTCCCTCCCTCTTTCCCAACTATGATTATCGGTTCCTACAACAGAGGTATGGAGAGGCATATGTGGAATCCAAGTTGAAGgtgagcgcttaagttaaatcagatcctccccaatgcaaattgaacagagg Alignment from Spaln_aa2Genome TCATCAAGAGCCCCCCAGGCTGGGAGGTGGGTGTCTATGCTGCCGGGGCCCTGGCTCTGCTGGGAATTGCTGCTGTGAGTCTATGGAAGCTCTGGACATCGGGGAGCTTCCCCAGCCCCTCCCCGTTCCCTAATTACGACTACAGGTACCTGCAGCAGAAATATGGAGAGGCCTATGTGGAGGCTAAGCTGAAG accactctcccttatgcacagagagctgcacgccctcaccttgctaccagTTATCAAGACCCCTCCAGGGTGGGAGGTGAAGGCCTACGCTGCTGGGGCCCTGTCTTTGCTGGGGATTGTAGCTGTGAGTTTATGGGAGCTTTGGGCATCAGGCAGCATCCCCAGTCCCTCCCTCTTTCCCAACTATGATTATCGGTTCCTACAACAGAGGTATGGAGAGGCATATGTGGAATCCAAGTTGAAGgtgagcgcttaagttaaatcagatcctccccaatgcaaattgaacagagg Alignment from Spaln_nt2Genome TCATCAAGAGCCCCCCAGGCTGGGAGGTGGGTGTCTATGCTGCCGGGGCCCTGGCTCTGCTGGGAATTGCTGCTGTGAGTCTATGGAAGCTCTGGACATCGGGGAGCTTCCCCAGCCCCTCCCCGTTCCCTAATTACGACTACAGGTACCTGCAGCAGAAATATGGAGAGGCCTATGTGGAGGCTAAGCTGAAG accactctcccttatgcacagagagctgcacgccctcaccttgctaccagTTATCAAGACCCCTCCAGGGTGGGAGGTGAAGGCCTACGCTGCTGGGGCCCTGTCTTTGCTGGGGATTGTAGCTGTGAGTTTATGGGAGCTTTGGGCATCAGGCAGCATCCCCAGTCCCTCCCTCTTTCCCAACTATGATTATCGGTTCCTACAACAGAGGTATGGAGAGGCATATGTGGAATCCAAGTTGAAGgtgagcgcttaagttaaatcagatcctccccaatgcaaattgaacagagg Alignment from Pairagon TCATCAAGAGCCCCCCAGGCTGGGAGGTGGGTGTCTATGCTGCCGGGGCCCTGGCTCTGCTGGGAATTGCTGCTGTGAGTCTATGGAAGCTCTGGACATCGGGGAGCTTCCCCAGCCCCTCCCCGTTCCCTAATTACGACTACAGGTACCTGCAGCAGAAATATGGAGAGGCCTATGTGGAGGCTAAGCTGAAG accactctcccttatgcacagagagctgcacgccctcaccttgctaccagTTATCAAGACCCCTCCAGGGTGGGAGGTGAAGGCCTACGCTGCTGGGGCCCTGTCTTTGCTGGGGATTGTAGCTGTGAGTTTATGGGAGCTTTGGGCATCAGGCAGCATCCCCAGTCCCTCCCTCTTTCCCAACTATGATTATCGGTTCCTACAACAGAGGTATGGAGAGGCATATGTGGAATCCAAGTTGAAGgtgagcgcttaagttaaatcagatcctccccaatgcaaattgaacagagg Alignment from Exonerate_protein2genome TCATCAAGAGCCCCCCAGGCTGGGAGGTGGGTGTCTATGCTGCCGGGGCCCTGGCTCTGCTGGGAATTGCTGCTGTGAGTCTATGGAAGCTCTGGACATCGGGGAGCTTCCCCAGCCCCTCCCCGTTCCCTAATTACGACTACAGGTACCTGCAGCAGAAATATGGAGAGGCCTATGTGGAGGCTAAGCTGAAG accactctcccttatgcacagagagctgcacgccctcaccttgctaccagTTATCAAGACCCCTCCAGGGTGGGAGGTGAAGGCCTACGCTGCTGGGGCCCTGTCTTTGCTGGGGATTGTAGCTGTGAGTTTATGGGAGCTTTGGGCATCAGGCAGCATCCCCAGTCCCTCCCTCTTTCCCAACTATGATTATCGGTTCCTACAACAGAGGTATGGAGAGGCATATGTGGAATCCAAGTTGAAGgtgagcgcttaagttaaatcagatcctccccaatgcaaattgaacagagg Alignment from Exonerate_coding2genome CTGAGCGTCATCAAGAGCCCCCCAGGCTGGGAGGTGGGTGTCTATGCTGCCGGGGCCCTGGCTCTGCTGGGAATTGCTGCTGTGAGTCTATGGAAGCTCTGGACATCGGGGAGCTTCCCCAGCCCCTCCCCGTTCCCTAATTACGACTACAGGTACCTGCAGCAGAAATATGGAGAGGCCTATGTGGAGGCTAAGCTGAAG accactctcccttatgcacagagagctgcacgccctcaccttgCTACCAGTTATCAAGACCCCTCCAGGGTGGGAGGTGAAGGCCTACGCTGCTGGGGCCCTGTCTTTGCTGGGGATTGTAGCTGTGAGTTTATGGGAGCTTTGGGCATCAGGCAGCATCCCCAGTCCCTCCCTCTTTCCCAACTATGATTATCGGTTCCTACAACAGAGGTATGGAGAGGCATATGTGGAATCCAAGTTGAAGgtgagcgcttaagttaaatcagatcctccccaatgcaaattgaacagagg Alignment from GeneWise GCCGTGGACGTGACAGAATATCAT------------CTGAGCGTCATCAAGAGCCCCCCAGGCTGGGAGGTGGGTGTCTATGCTGCCGGGGCCCTGGCTCTGCTGGGAATTGCTGCTGTGAGTCTATGGAAGCTCTGGACATCGGGGAGCTTCCCCAGCCCCTCCCCGTTCCCTAATTACGACTACAGGTACCTGCAGCAGAAATATGGAGAGGCCTATGTGGAGGCTAAGCTGAAG accactcTCCCTTATGCACAGAGAGCTGCACGCCCTCACCTTGCTACCAGTTATCAAGACCCCTCCAGGGTGGGAGGTGAAGGCCTACGCTGCTGGGGCCCTGTCTTTGCTGGGGATTGTAGCTGTGAGTTTATGGGAGCTTTGGGCATCAGGCAGCATCCCCAGTCCCTCCCTCTTTCCCAACTATGATTATCGGTTCCTACAACAGAGGTATGGAGAGGCATATGTGGAATCCAAGTTGAAGgtgagcgcttaagttaaatcagatcctccccaatgcaaattgaacagagg #### Syt7_ID2810_3 --> 0 - 2 Original Alignment GGCAAACGCTACAAGAATTCCTTGGAGACGGTGGGCACGCCAGACTCGGGGCGTGGGCGCGGTGAGAAGAAAGCCATCaa ttatccttagattcacccaattgtcgataagcaagcacatgtcttcttagGGCAAACGCTACAAGAATTCCTCAGAGATGGTCGGCACGCCAGACTCAGGTCGCGGACGTGGTGAGAAGAAAGCCATCaagtgagtccaggctttcagtatgggtcagatagaggtattgagaactattg Alignment from CESAR GGCAAACGCTACAAGAATTCCTTGGAGACGGTGGGCACGCCAGACTCGGGGCGTGGGCGCGGTGAGAAGAAAGCCATCaa ttatccttagattcacccaattgtcgataagcaagcacatgtcttcttagGGCAAACGCTACAAGAATTCCTCAGAGATGGTCGGCACGCCAGACTCAGGTCGCGGACGTGGTGAGAAGAAAGCCATCaagtgagtccaggctttcagtatgggtcagatagaggtattgagaactattg Alignment from Spaln_aa2Genome GGCAAACGCTACAAGAATTCCTTGGAGACGGTGGGCACGCCAGACTCGGGGCGTGGGCGCGGTGAGAAGAAAGCCATCAA ttatccttagattcacccaattgtcgataagcaagcacatgtcttcttagGGCAAACGCTACAAGAATTCCTCAGAGATGGTCGGCACGCCAGACTCAGGTCGCGGACGTGGTGAGAAGAAAGCCATCAAgtgagtccaggctttcagtatgggtcagatagaggtattgagaactattg Alignment from Spaln_nt2Genome GGCAAACGCTACAAGAATTCCTTGGAGACGGTGGGCACGCCAGACTCGGGGCGTGGGCGCGGTGAGAAGAAAGCCATCAA ttatccttagattcacccaattgtcgataagcaagcacatgtcttcttagGGCAAACGCTACAAGAATTCCTCAGAGATGGTCGGCACGCCAGACTCAGGTCGCGGACGTGGTGAGAAGAAAGCCATCAAgtgagtccaggctttcagtatgggtcagatagaggtattgagaactattg Alignment from Pairagon GGCAAACGCTACAAGAATTCCTTGGAGACGGTGGGCACGCCAGACTCGGGGCGTGGGCGCGGTGAGAAGAAAGCCATCAA ttatccttagattcacccaattgtcgataagcaagcacatgtcttcttagGGCAAACGCTACAAGAATTCCTCAGAGATGGTCGGCACGCCAGACTCAGGTCGCGGACGTGGTGAGAAGAAAGCCATCAAgtgagtccaggctttcagtatgggtcagatagaggtattgagaactattg Alignment from Exonerate_protein2genome GGCAAACGCTACAAGAATTCCTTGGAGACGGTGGGCACGCCAGACTCGGGGCGTGGGCGCGGTGAGAAGAAAGCCATCAA ttatccttagattcacccaattgtcgataagcaagcacatgtcttcttagGGCAAACGCTACAAGAATTCCTCAGAGATGGTCGGCACGCCAGACTCAGGTCGCGGACGTGGTGAGAAGAAAGCCATCAAgtgagtccaggctttcagtatgggtcagatagaggtattgagaactattg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGCAAACGCTACAAGAATTCCTTGGAGACGGTGGGCACGCCAGACTCGGGGCGTGGGCGCGGTGAGAAGAAAGCCATCAA ttatccttagattcacccaattgtcgataagcaagcacatgtcttcttagGGCAAACGCTACAAGAATTCCTCAGAGATGGTCGGCACGCCAGACTCAGGTCGCGGACGTGGTGAGAAGAAAGCCATCAAgtgagtccaggctttcagtatgggtcagatagaggtattgagaactattg #### Syt7_ID2816_4 --> 1 - 2 Original Alignment tTTCGAGGACTCCACCCTGTCCACGGCCACTACCCTTGAGTCTATCCCCAGCTCCGCGGGAGAGCCGAAATGCCAGCGACCCCGCACACTGATGCGGCAGCAGAGCCTGCAGCAGCCGCTGAGCCAGAACCAGCAGGGCCGGCAGCCCAGTCAGCCCACCACCAGCCAGAGCCTGGGCCAGCTGCAGGCCCACGCGGCCTCGGCACCGGGCTCCAACCCCCGGGCCTATGGTCGGGGTCAGGCTCGGCAGGGCACCTCGGCCGGCTCCAAGTACCGGGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCACGTGGTGGGGCAGATTCGAAACCGAGGCTTGGACATGAAATCCTTCct cagaggaaatagacagttggagggggcactgtttttttccttctttgcagcTTTGAGGACTCCACCCTGTCCACGGCCACTACACTTGAGTCCATCCCAAGCTCTGCAGGAGAGCCAAAATGCCAGCGACCACGCACACTGATGTGGCAGCAGAGCCTGCAGGAGCCACTGAGCCAGAATCAGCAGGGGCGGCAGCCCAGTCAGCCCACCACTAGTCAGAGTCTGGGACAACTGCAGACCCATGCAGCCTCAGCACCAGGATCCAACCCTAGAGCCTATGGCTGGGGTCAGGCTCGGCAGGAGACCTCAGCTGGCTCTAAGTATCATGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCATGTGGTGGGGCAGATTCGAAACCGAGGCCTGGATATGAAATCCTTCctgtatgatacatcaaccaagcccctggccacaatcccctcaaatgctttac Alignment from CESAR tTTCGAGGACTCCACCCTGTCCACGGCCACTACCCTTGAGTCTATCCCCAGCTCCGCGGGAGAGCCGAAATGCCAGCGACCCCGCACACTGATGCGGCAGCAGAGCCTGCAGCAGCCGCTGAGCCAGAACCAGCAGGGCCGGCAGCCCAGTCAGCCCACCACCAGCCAGAGCCTGGGCCAGCTGCAGGCCCACGCGGCCTCGGCACCGGGCTCCAACCCCCGGGCCTATGGTCGGGGTCAGGCTCGGCAGGGCACCTCGGCCGGCTCCAAGTACCGGGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCACGTGGTGGGGCAGATTCGAAACCGAGGCTTGGACATGAAATCCTTCct cagaggaaatagacagttggagggggcactgtttttttccttctttgcagcTTTGAGGACTCCACCCTGTCCACGGCCACTACACTTGAGTCCATCCCAAGCTCTGCAGGAGAGCCAAAATGCCAGCGACCACGCACACTGATGTGGCAGCAGAGCCTGCAGGAGCCACTGAGCCAGAATCAGCAGGGGCGGCAGCCCAGTCAGCCCACCACTAGTCAGAGTCTGGGACAACTGCAGACCCATGCAGCCTCAGCACCAGGATCCAACCCTAGAGCCTATGGCTGGGGTCAGGCTCGGCAGGAGACCTCAGCTGGCTCTAAGTATCATGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCATGTGGTGGGGCAGATTCGAAACCGAGGCCTGGATATGAAATCCTTCctgtatgatacatcaaccaagcccctggccacaatcccctcaaatgctttac Alignment from Spaln_aa2Genome TTTCGAGGACTCCACCCTGTCCACGGCCACTACCCTTGAGTCTATCCCCAGCTCCGCGGGAGAGCCGAAATGCCAGCGACCCCGCACACTGATGCGGCAGCAGAGCCTGCAGCAGCCGCTGAGCCAGAACCAGCAGGGCCGGCAGCCCAGTCAGCCCACCACCAGCCAGAGCCTGGGCCAGCTGCAGGCCCACGCGGCCTCGGCACCGGGCTCCAACCCCCGGGCCTATGGTCGGGGTCAGGCTCGGCAGGGCACCTCGGCCGGCTCCAAGTACCGGGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCACGTGGTGGGGCAGATTCGAAACCGAGGCTTGGACATGAAATCCTTCCT cagaggaaatagacagttggagggggcactgtttttttccttctttgcagCTTTGAGGACTCCACCCTGTCCACGGCCACTACACTTGAGTCCATCCCAAGCTCTGCAGGAGAGCCAAAATGCCAGCGACCACGCACACTGATGTGGCAGCAGAGCCTGCAGGAGCCACTGAGCCAGAATCAGCAGGGGCGGCAGCCCAGTCAGCCCACCACTAGTCAGAGTCTGGGACAACTGCAGACCCATGCAGCCTCAGCACCAGGATCCAACCCTAGAGCCTATGGCTGGGGTCAGGCTCGGCAGGAGACCTCAGCTGGCTCTAAGTATCATGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCATGTGGTGGGGCAGATTCGAAACCGAGGCCTGGATATGAAATCCTTCCTgtatgatacatcaaccaagcccctggccacaatcccctcaaatgctttac Alignment from Spaln_nt2Genome TTTCGAGGACTCCACCCTGTCCACGGCCACTACCCTTGAGTCTATCCCCAGCTCCGCGGGAGAGCCGAAATGCCAGCGACCCCGCACACTGATGCGGCAGCAGAGCCTGCAGCAGCCGCTGAGCCAGAACCAGCAGGGCCGGCAGCCCAGTCAGCCCACCACCAGCCAGAGCCTGGGCCAGCTGCAGGCCCACGCGGCCTCGGCACCGGGCTCCAACCCCCGGGCCTATGGTCGGGGTCAGGCTCGGCAGGGCACCTCGGCCGGCTCCAAGTACCGGGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCACGTGGTGGGGCAGATTCGAAACCGAGGCTTGGACATGAAATCCTTCCT cagaggaaatagacagttggagggggcactgtttttttccttctttgcagCTTTGAGGACTCCACCCTGTCCACGGCCACTACACTTGAGTCCATCCCAAGCTCTGCAGGAGAGCCAAAATGCCAGCGACCACGCACACTGATGTGGCAGCAGAGCCTGCAGGAGCCACTGAGCCAGAATCAGCAGGGGCGGCAGCCCAGTCAGCCCACCACTAGTCAGAGTCTGGGACAACTGCAGACCCATGCAGCCTCAGCACCAGGATCCAACCCTAGAGCCTATGGCTGGGGTCAGGCTCGGCAGGAGACCTCAGCTGGCTCTAAGTATCATGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCATGTGGTGGGGCAGATTCGAAACCGAGGCCTGGATATGAAATCCTTCCTgtatgatacatcaaccaagcccctggccacaatcccctcaaatgctttac Alignment from Pairagon TTTCGAGGACTCCACCCTGTCCACGGCCACTACCCTTGAGTCTATCCCCAGCTCCGCGGGAGAGCCGAAATGCCAGCGACCCCGCACACTGATGCGGCAGCAGAGCCTGCAGCAGCCGCTGAGCCAGAACCAGCAGGGCCGGCAGCCCAGTCAGCCCACCACCAGCCAGAGCCTGGGCCAGCTGCAGGCCCACGCGGCCTCGGCACCGGGCTCCAACCCCCGGGCCTATGGTCGGGGTCAGGCTCGGCAGGGCACCTCGGCCGGCTCCAAGTACCGGGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCACGTGGTGGGGCAGATTCGAAACCGAGGCTTGGACATGAAATCCTTCCT cagaggaaatagacagttggagggggcactgtttttttccttctttgcagCTTTGAGGACTCCACCCTGTCCACGGCCACTACACTTGAGTCCATCCCAAGCTCTGCAGGAGAGCCAAAATGCCAGCGACCACGCACACTGATGTGGCAGCAGAGCCTGCAGGAGCCACTGAGCCAGAATCAGCAGGGGCGGCAGCCCAGTCAGCCCACCACTAGTCAGAGTCTGGGACAACTGCAGACCCATGCAGCCTCAGCACCAGGATCCAACCCTAGAGCCTATGGCTGGGGTCAGGCTCGGCAGGAGACCTCAGCTGGCTCTAAGTATCATGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCATGTGGTGGGGCAGATTCGAAACCGAGGCCTGGATATGAAATCCTTCCTgtatgatacatcaaccaagcccctggccacaatcccctcaaatgctttac Alignment from Exonerate_protein2genome TTTCGAGGACTCCACCCTGTCCACGGCCACTACCCTTGAGTCTATCCCCAGCTCCGCGGGAGAGCCGAAATGCCAGCGACCCCGCACACTGATGCGGCAGCAGAGCCTGCAGCAGCCGCTGAGCCAGAACCAGCAGGGCCGGCAGCCCAGTCAGCCCACCACCAGCCAGAGCCTGGGCCAGCTGCAGGCCCACGCGGCCTCGGCACCGGGCTCCAACCCCCGGGCCTATGGTCGGGGTCAGGCTCGGCAGGGCACCTCGGCCGGCTCCAAGTACCGGGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCACGTGGTGGGGCAGATTCGAAACCGAGGCTTGGACATGAAATCCTTCCT cagaggaaatagacagttggagggggcactgtttttttccttctttgcagCTTTGAGGACTCCACCCTGTCCACGGCCACTACACTTGAGTCCATCCCAAGCTCTGCAGGAGAGCCAAAATGCCAGCGACCACGCACACTGATGTGGCAGCAGAGCCTGCAGGAGCCACTGAGCCAGAATCAGCAGGGGCGGCAGCCCAGTCAGCCCACCACTAGTCAGAGTCTGGGACAACTGCAGACCCATGCAGCCTCAGCACCAGGATCCAACCCTAGAGCCTATGGCTGGGGTCAGGCTCGGCAGGAGACCTCAGCTGGCTCTAAGTATCATGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCATGTGGTGGGGCAGATTCGAAACCGAGGCCTGGATATGAAATCCTTCCTgtatgatacatcaaccaagcccctggccacaatcccctcaaatgctttac Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TTTCGAGGACTCCACCCTGTCCACGGCCACTACCCTTGAGTCTATCCCCAGCTCCGCGGGAGAGCCGAAATGCCAGCGACCCCGCACACTGATGCGGCAGCAGAGCCTGCAGCAGCCGCTGAGCCAGAACCAGCAGGGCCGGCAGCCCAGTCAGCCCACCACCAGCCAGAGCCTGGGCCAGCTGCAGGCCCACGCGGCCTCGGCACCGGGCTCCAACCCCCGGGCCTATGGTCGGGGTCAGGCTCGGCAGGGCACCTCGGCCGGCTCCAAGTACCGGGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCACGTGGTGGGGCAGATTCGAAACCGAGGCTTGGACATGAAATCCTTCCT cagaggaaatagacagttggagggggcactgtttttttccttctttgcagCTTTGAGGACTCCACCCTGTCCACGGCCACTACACTTGAGTCCATCCCAAGCTCTGCAGGAGAGCCAAAATGCCAGCGACCACGCACACTGATGTGGCAGCAGAGCCTGCAGGAGCCACTGAGCCAGAATCAGCAGGGGCGGCAGCCCAGTCAGCCCACCACTAGTCAGAGTCTGGGACAACTGCAGACCCATGCAGCCTCAGCACCAGGATCCAACCCTAGAGCCTATGGCTGGGGTCAGGCTCGGCAGGAGACCTCAGCTGGCTCTAAGTATCATGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCATGTGGTGGGGCAGATTCGAAACCGAGGCCTGGATATGAAATCCTTCCTgtatgatacatcaaccaagcccctggccacaatcccctcaaatgctttac #### Syt7_ID2827_8 --> 2 - 0 Original Alignment ggTTTCCCTACGAGAAAGTGGTGCAGAGGGTCCTCTACCTCCAGGTCCTGGATTATGACCGTTTCAGCCGCAATGACCCCATTGGGGAGGTGTCCATCCCTCTGAACAAGGTGGACCTGACCCAGATGCAGACCTTCTGGAAGGATCTGAAGCCATGCAGCGATGGGAGT cgcttatatcaatattatcttctatcgatcttcatgtgttctgtttacagggTTTCCCTATGAAAAAGTGGTGCAGAGGGTCCTTTACCTCCAAGTCCTGGATTATGACCGTTTCAGCCGCAATGACCCCATTGGGGAGGTGTCCATCCCTCTGAACAAGGTAGACCTGACCCAGATGCAGACATTCTGGAAAGATCTCAAGCCATGCAGCGATGGGAGTgtggggtactctggtattcgtcaatgggaacagtggttaagccccaccct Alignment from CESAR ggTTTCCCTACGAGAAAGTGGTGCAGAGGGTCCTCTACCTCCAGGTCCTGGATTATGACCGTTTCAGCCGCAATGACCCCATTGGGGAGGTGTCCATCCCTCTGAACAAGGTGGACCTGACCCAGATGCAGACCTTCTGGAAGGATCTGAAGCCATGCAGCGATGGGAGT cgcttatatcaatattatcttctatcgatcttcatgtgttctgtttacagggTTTCCCTATGAAAAAGTGGTGCAGAGGGTCCTTTACCTCCAAGTCCTGGATTATGACCGTTTCAGCCGCAATGACCCCATTGGGGAGGTGTCCATCCCTCTGAACAAGGTAGACCTGACCCAGATGCAGACATTCTGGAAAGATCTCAAGCCATGCAGCGATGGGAGTgtggggtactctggtattcgtcaatgggaacagtggttaagccccaccct Alignment from Spaln_aa2Genome GGTTTCCCTACGAGAAAGTGGTGCAGAGGGTCCTCTACCTCCAGGTCCTGGATTATGACCGTTTCAGCCGCAATGACCCCATTGGGGAGGTGTCCATCCCTCTGAACAAGGTGGACCTGACCCAGATGCAGACCTTCTGGAAGGATCTGAAGCCATGCAGCGATGGGAGT cgcttatatcaatattatcttctatcgatcttcatgtgttctgtttacagGGTTTCCCTATGAAAAAGTGGTGCAGAGGGTCCTTTACCTCCAAGTCCTGGATTATGACCGTTTCAGCCGCAATGACCCCATTGGGGAGGTGTCCATCCCTCTGAACAAGGTAGACCTGACCCAGATGCAGACATTCTGGAAAGATCTCAAGCCATGCAGCGATGGGAGTgtggggtactctggtattcgtcaatgggaacagtggttaagccccaccct Alignment from Spaln_nt2Genome GGTTTCCCTACGAGAAAGTGGTGCAGAGGGTCCTCTACCTCCAGGTCCTGGATTATGACCGTTTCAGCCGCAATGACCCCATTGGGGAGGTGTCCATCCCTCTGAACAAGGTGGACCTGACCCAGATGCAGACCTTCTGGAAGGATCTGAAGCCATGCAGCGATGGGAGT cgcttatatcaatattatcttctatcgatcttcatgtgttctgtttacagGGTTTCCCTATGAAAAAGTGGTGCAGAGGGTCCTTTACCTCCAAGTCCTGGATTATGACCGTTTCAGCCGCAATGACCCCATTGGGGAGGTGTCCATCCCTCTGAACAAGGTAGACCTGACCCAGATGCAGACATTCTGGAAAGATCTCAAGCCATGCAGCGATGGGAGTgtggggtactctggtattcgtcaatgggaacagtggttaagccccaccct Alignment from Pairagon GGTTTCCCTACGAGAAAGTGGTGCAGAGGGTCCTCTACCTCCAGGTCCTGGATTATGACCGTTTCAGCCGCAATGACCCCATTGGGGAGGTGTCCATCCCTCTGAACAAGGTGGACCTGACCCAGATGCAGACCTTCTGGAAGGATCTGAAGCCATGCAGCGATGGGAGT cgcttatatcaatattatcttctatcgatcttcatgtgttctgtttacagGGTTTCCCTATGAAAAAGTGGTGCAGAGGGTCCTTTACCTCCAAGTCCTGGATTATGACCGTTTCAGCCGCAATGACCCCATTGGGGAGGTGTCCATCCCTCTGAACAAGGTAGACCTGACCCAGATGCAGACATTCTGGAAAGATCTCAAGCCATGCAGCGATGGGAGTgtggggtactctggtattcgtcaatgggaacagtggttaagccccaccct Alignment from Exonerate_protein2genome GGTTTCCCTACGAGAAAGTGGTGCAGAGGGTCCTCTACCTCCAGGTCCTGGATTATGACCGTTTCAGCCGCAATGACCCCATTGGGGAGGTGTCCATCCCTCTGAACAAGGTGGACCTGACCCAGATGCAGACCTTCTGGAAGGATCTGAAGCCATGCAGCGATGGGAGT cgcttatatcaatattatcttctatcgatcttcatgtgttctgtttacagGGTTTCCCTATGAAAAAGTGGTGCAGAGGGTCCTTTACCTCCAAGTCCTGGATTATGACCGTTTCAGCCGCAATGACCCCATTGGGGAGGTGTCCATCCCTCTGAACAAGGTAGACCTGACCCAGATGCAGACATTCTGGAAAGATCTCAAGCCATGCAGCGATGGGAGTgtggggtactctggtattcgtcaatgggaacagtggttaagccccaccct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGTTTCCCTACGAGAAAGTGGTGCAGAGGGTCCTCTACCTCCAGGTCCTGGATTATGACCGTTTCAGCCGCAATGACCCCATTGGGGAGGTGTCCATCCCTCTGAACAAGGTGGACCTGACCCAGATGCAGACCTTCTGGAAGGATCTGAAGCCATGCAGCGATGGGAGT cgcttatatcaatattatcttctatcgatcttcatgtgttctgtttacagGGTTTCCCTATGAAAAAGTGGTGCAGAGGGTCCTTTACCTCCAAGTCCTGGATTATGACCGTTTCAGCCGCAATGACCCCATTGGGGAGGTGTCCATCCCTCTGAACAAGGTAGACCTGACCCAGATGCAGACATTCTGGAAAGATCTCAAGCCATGCAGCGATGGGAGTgtggggtactctggtattcgtcaatgggaacagtggttaagccccaccct #### Taf5_ID10096_4 --> 0 - 2 Original Alignment GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACag aggcaaaatcaaacgacctaacatgaaatttgattttccttcctcctaagGTGTTTTTTGGGTTACTAAGGGAACCAGACATAGAGGTTCCCTTGGATGAAAAGGATGAGGAAGGAGAAAATGAAGAAGGAAAACCAAAAAAAAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGTAGAAAACGAGGACCCAATGCTCCACCTCAAAACaggtgagaatcacataaaggtcaaagccatgtctaaaggattgaagtgggtt Alignment from CESAR GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACag aggcaaaatcaaacgacctaacatgaaatttgattttccttcctcctaagGTGTTTTTTGGGTTACTAAGGGAACCAGACATAGAGGTTCCCTTGGATGAAAAGGATGAGGAAGGAGAAAATGAAGAAGGAAAACCAAAAAAAAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGTAGAAAACGAGGACCCAATGCTCCACCTCAAAACaggtgagaatcacataaaggtcaaagccatgtctaaaggattgaagtgggtt Alignment from Spaln_aa2Genome GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAG aggcaaaatcaaacgacctaacatgaaatttgattttccttcctcctaagGTGTTTTTTGGGTTACTAAGGGAACCAGACATAGAGGTTCCCTTGGATGAAAAGGATGAGGAAGGAGAAAATGAAGAAGGAAAACCAAAAAAAAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGTAGAAAACGAGGACCCAATGCTCCACCTCAAAACAGgtgagaatcacataaaggtcaaagccatgtctaaaggattgaagtgggtt Alignment from Spaln_nt2Genome GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAG aggcaaaatcaaacgacctaacatgaaatttgattttccttcctcctaagGTGTTTTTTGGGTTACTAAGGGAACCAGACATAGAGGTTCCCTTGGATGAAAAGGATGAGGAAGGAGAAAATGAAGAAGGAAAACCAAAAAAAAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGTAGAAAACGAGGACCCAATGCTCCACCTCAAAACAGgtgagaatcacataaaggtcaaagccatgtctaaaggattgaagtgggtt Alignment from Pairagon GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAG aggcaaaatcaaacgacctaacatgaaatttgattttccttcctcctaagGTGTTTTTTGGGTTACTAAGGGAACCAGACATAGAGGTTCCCTTGGATGAAAAGGATGAGGAAGGAGAAAATGAAGAAGGAAAACCAAAAAAAAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGTAGAAAACGAGGACCCAATGCTCCACCTCAAAACAGgtgagaatcacataaaggtcaaagccatgtctaaaggattgaagtgggtt Alignment from Exonerate_protein2genome GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAG aggcaaaatcaaacgacctaacatgaaatttgattttccttcctcctaagGTGTTTTTTGGGTTACTAAGGGAACCAGACATAGAGGTTCCCTTGGATGAAAAGGATGAGGAAGGAGAAAATGAAGAAGGAAAACCAAAAAAAAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGTAGAAAACGAGGACCCAATGCTCCACCTCAAAACAGgtgagaatcacataaaggtcaaagccatgtctaaaggattgaagtgggtt Alignment from Exonerate_coding2genome GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAG aggcaaaatcaaacgacctaacatgaaatttgattttccttcctcctaagGTGTTTTTTGGGTTACTAAGGGAACCAGACATAGAGGTTCCCTTGGATGAAAAGGATGAGGAAGGAGAAAATGAAGAAGGAAAACCAAAAAAAAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGTAGAAAACGAGGACCCAATGCTCCACCTCAAAACAGgtgagaatcacataaaggtcaaagccatgtctaaaggattgaagtgggtt Alignment from GeneWise GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAG aggcaaaatcaaacgacctaacatgaaatttgattttccttcctcctaagGTGTTTTTTGGGTTACTAAGGGAACCAGACATAGAGGTTCCCTTGGATGAAAAGGATGAGGAAGGAGAAAATGAAGAAGGAAAACCAAAAAAAAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGTAGAAAACGAGGACCCAATGCTCCACCTCAAAACAGgtgagaatcacataaaggtcaaagccatgtctaaaggattgaagtgggtt #### Taf5_ID10097_5 --> 1 - 0 Original Alignment aATTCCTCTTCCTGAGTTAAAAGATTCAGACAAACTGGACAAAATAATGAATATGAAAGAAACTACCAAACGAGTGCGCCTCGGGCCAGACTGTTTACCCTCCATTTGTTTCTATACATTCCTTAATGCTTACCAG gacacgtgattctgcacaacagactgtctttaatttgtttttttcctcagaATTCCTCTCCCGGAACTAAAGGATTCAGACAAATTAGACAAAATAATGAATATGAAAGAAACTACCAAACGGGTGCGCCTTGGGCCAGACTGTTTACCTTCAATTTGTTATTATACCTTTGTTAATGCTTACCAGgtaagcaagaaaacaggcagtgctatgtcacacaggtggccacagctgca Alignment from CESAR aATTCCTCTTCCTGAGTTAAAAGATTCAGACAAACTGGACAAAATAATGAATATGAAAGAAACTACCAAACGAGTGCGCCTCGGGCCAGACTGTTTACCCTCCATTTGTTTCTATACATTCCTTAATGCTTACCAG gacacgtgattctgcacaacagactgtctttaatttgtttttttcctcagaATTCCTCTCCCGGAACTAAAGGATTCAGACAAATTAGACAAAATAATGAATATGAAAGAAACTACCAAACGGGTGCGCCTTGGGCCAGACTGTTTACCTTCAATTTGTTATTATACCTTTGTTAATGCTTACCAGgtaagcaagaaaacaggcagtgctatgtcacacaggtggccacagctgca Alignment from Spaln_aa2Genome AATTCCTCTTCCTGAGTTAAAAGATTCAGACAAACTGGACAAAATAATGAATATGAAAGAAACTACCAAACGAGTGCGCCTCGGGCCAGACTGTTTACCCTCCATTTGTTTCTATACATTCCTTAATGCTTACCAG gacacgtgattctgcacaacagactgtctttaatttgtttttttcctcagAATTCCTCTCCCGGAACTAAAGGATTCAGACAAATTAGACAAAATAATGAATATGAAAGAAACTACCAAACGGGTGCGCCTTGGGCCAGACTGTTTACCTTCAATTTGTTATTATACCTTTGTTAATGCTTACCAGgtaagcaagaaaacaggcagtgctatgtcacacaggtggccacagctgca Alignment from Spaln_nt2Genome AATTCCTCTTCCTGAGTTAAAAGATTCAGACAAACTGGACAAAATAATGAATATGAAAGAAACTACCAAACGAGTGCGCCTCGGGCCAGACTGTTTACCCTCCATTTGTTTCTATACATTCCTTAATGCTTACCAG gacacgtgattctgcacaacagactgtctttaatttgtttttttcctcagAATTCCTCTCCCGGAACTAAAGGATTCAGACAAATTAGACAAAATAATGAATATGAAAGAAACTACCAAACGGGTGCGCCTTGGGCCAGACTGTTTACCTTCAATTTGTTATTATACCTTTGTTAATGCTTACCAGgtaagcaagaaaacaggcagtgctatgtcacacaggtggccacagctgca Alignment from Pairagon AATTCCTCTTCCTGAGTTAAAAGATTCAGACAAACTGGACAAAATAATGAATATGAAAGAAACTACCAAACGAGTGCGCCTCGGGCCAGACTGTTTACCCTCCATTTGTTTCTATACATTCCTTAATGCTTACCAG gacacgtgattctgcacaacagactgtctttaatttgtttttttcctcagAATTCCTCTCCCGGAACTAAAGGATTCAGACAAATTAGACAAAATAATGAATATGAAAGAAACTACCAAACGGGTGCGCCTTGGGCCAGACTGTTTACCTTCAATTTGTTATTATACCTTTGTTAATGCTTACCAGgtaagcaagaaaacaggcagtgctatgtcacacaggtggccacagctgca Alignment from Exonerate_protein2genome AATTCCTCTTCCTGAGTTAAAAGATTCAGACAAACTGGACAAAATAATGAATATGAAAGAAACTACCAAACGAGTGCGCCTCGGGCCAGACTGTTTACCCTCCATTTGTTTCTATACATTCCTTAATGCTTACCAG gacacgtgattctgcacaacagactgtctttaatttgtttttttcctcagAATTCCTCTCCCGGAACTAAAGGATTCAGACAAATTAGACAAAATAATGAATATGAAAGAAACTACCAAACGGGTGCGCCTTGGGCCAGACTGTTTACCTTCAATTTGTTATTATACCTTTGTTAATGCTTACCAGgtaagcaagaaaacaggcagtgctatgtcacacaggtggccacagctgca Alignment from Exonerate_coding2genome AATTCCTCTTCCTGAGTTAAAAGATTCAGACAAACTGGACAAAATAATGAATATGAAAGAAACTACCAAACGAGTGCGCCTCGGGCCAGACTGTTTACCCTCCATTTGTTTCTATACATTCCTTAATGCTTACCAG gacacgtgattctgcacaacagactgtctttaatttgtttttttcctcagAATTCCTCTCCCGGAACTAAAGGATTCAGACAAATTAGACAAAATAATGAATATGAAAGAAACTACCAAACGGGTGCGCCTTGGGCCAGACTGTTTACCTTCAATTTGTTATTATACCTTTGTTAATGCTTACCAGgtaagcaagaaaacaggcagtgctatgtcacacaggtggccacagctgca Alignment from GeneWise AATTCCTCTTCCTGAGTTAAAAGATTCAGACAAACTGGACAAAATAATGAATATGAAAGAAACTACCAAACGAGTGCGCCTCGGGCCAGACTGTTTACCCTCCATTTGTTTCTATACATTCCTTAATGCTTACCAG gacacgtgattctgcacaacagactgtctttaatttgtttttttcctcagAATTCCTCTCCCGGAACTAAAGGATTCAGACAAATTAGACAAAATAATGAATATGAAAGAAACTACCAAACGGGTGCGCCTTGGGCCAGACTGTTTACCTTCAATTTGTTATTATACCTTTGTTAATGCTTACCAGgtaagcaagaaaacaggcagtgctatgtcacacaggtggccacagctgca #### Taf5_ID10098_6 --> 0 - 1 Original Alignment GGCCTCACTGCAGTGGATGTCACTGATGACTCTAGTCTGATTGCTGGAGGTTTTGCTGATTCAACTGTCAGAGTGTGGTCTGTGACCCCTAAAAAGCTTCGTAGTGTCAAACAAGCATCAg gaccatttaacctaagacattttctgggtatttccttcccatctctccagGGCCTCACGGCAGTGCATGTCACCGATGACTATAGTCTGATTGCTAGGGGTTTTGCTGAATCAACTGTTAGAGTATGGTCTGTGACCCCTGATAAGCTTCGTAGTGTTAAACAAGCATTAggtcagtgcattggaattatcatatgaacttaaaaagacacaatgggttaa Alignment from CESAR GGCCTCACTGCAGTGGATGTCACTGATGACTCTAGTCTGATTGCTGGAGGTTTTGCTGATTCAACTGTCAGAGTGTGGTCTGTGACCCCTAAAAAGCTTCGTAGTGTCAAACAAGCATCAg gaccatttaacctaagacattttctgggtatttccttcccatctctccagGGCCTCACGGCAGTGCATGTCACCGATGACTATAGTCTGATTGCTAGGGGTTTTGCTGAATCAACTGTTAGAGTATGGTCTGTGACCCCTGATAAGCTTCGTAGTGTTAAACAAGCATTAggtcagtgcattggaattatcatatgaacttaaaaagacacaatgggttaa Alignment from Spaln_aa2Genome GGCCTCACTGCAGTGGATGTCACTGATGACTCTAGTCTGATTGCTGGAGGTTTTGCTGATTCAACTGTCAGAGTGTGGTCTGTGACCCCTAAAAAGCTTCGTAGTGTCAAACAAGCATCAG gaccatttaacctaagacattttctgggtatttccttcccatctctccagGGCCTCACGGCAGTGCATGTCACCGATGACTATAGTCTGATTGCTAGGGGTTTTGCTGAATCAACTGTTAGAGTATGGTCTGTGACCCCTGATAAGCTTCGTAGTGTTAAACAAGCATTAGgtcagtgcattggaattatcatatgaacttaaaaagacacaatgggttaa Alignment from Spaln_nt2Genome GGCCTCACTGCAGTGGATGTCACTGATGACTCTAGTCTGATTGCTGGAGGTTTTGCTGATTCAACTGTCAGAGTGTGGTCTGTGACCCCTAAAAAGCTTCGTAGTGTCAAACAAGCATCAG gaccatttaacctaagacattttctgggtatttccttcccatctctccagGGCCTCACGGCAGTGCATGTCACCGATGACTATAGTCTGATTGCTAGGGGTTTTGCTGAATCAACTGTTAGAGTATGGTCTGTGACCCCTGATAAGCTTCGTAGTGTTAAACAAGCATTAGgtcagtgcattggaattatcatatgaacttaaaaagacacaatgggttaa Alignment from Pairagon GGCCTCACTGCAGTGGATGTCACTGATGACTCTAGTCTGATTGCTGGAGGTTTTGCTGATTCAACTGTCAGAGTGTGGTCTGTGACCCCTAAAAAGCTTCGTAGTGTCAAACAAGCATCAG gaccatttaacctaagacattttctgggtatttccttcccatctctccagGGCCTCACGGCAGTGCATGTCACCGATGACTATAGTCTGATTGCTAGGGGTTTTGCTGAATCAACTGTTAGAGTATGGTCTGTGACCCCTGATAAGCTTCGTAGTGTTAAACAAGCATTAGgtcagtgcattggaattatcatatgaacttaaaaagacacaatgggttaa Alignment from Exonerate_protein2genome GGCCTCACTGCAGTGGATGTCACTGATGACTCTAGTCTGATTGCTGGAGGTTTTGCTGATTCAACTGTCAGAGTGTGGTCTGTGACCCCTAAAAAGCTTCGTAGTGTCAAACAAGCATCAG gaccatttaacctaagacattttctgggtatttccttcccatctctccagGGCCTCACGGCAGTGCATGTCACCGATGACTATAGTCTGATTGCTAGGGGTTTTGCTGAATCAACTGTTAGAGTATGGTCTGTGACCCCTGATAAGCTTCGTAGTGTTAAACAAGCATTAGgtcagtgcattggaattatcatatgaacttaaaaagacacaatgggttaa Alignment from Exonerate_coding2genome GGCCTCACTGCAGTGGATGTCACTGATGACTCTAGTCTGATTGCTGGAGGTTTTGCTGATTCAACTGTCAGAGTGTGGTCTGTGACCCCTAAAAAGCTTCGTAGTGTCAAACAAGCATCAG gaccatttaacctaagacattttctgggtatttccttcccatctctccagGGCCTCACGGCAGTGCATGTCACCGATGACTATAGTCTGATTGCTAGGGGTTTTGCTGAATCAACTGTTAGAGTATGGTCTGTGACCCCTGATAAGCTTCGTAGTGTTAAACAAGCATTAGgtcagtgcattggaattatcatatgaacttaaaaagacacaatgggttaa Alignment from GeneWise GGCCTCACTGCAGTGGATGTCACTGATGACTCTAGTCTGATTGCTGGAGGTTTTGCTGATTCAACTGTCAGAGTGTGGTCTGTGACCCCTAAAAAGCTTCGTAGTGTCAAACAAGCATCAG gaccatttaacctaagacattttctgggtatttccttcccatctctccagGGCCTCACGGCAGTGCATGTCACCGATGACTATAGTCTGATTGCTAGGGGTTTTGCTGAATCAACTGTTAGAGTATGGTCTGTGACCCCTGATAAGCTTCGTAGTGTTAAACAAGCATTAGgtcagtgcattggaattatcatatgaacttaaaaagacacaatgggttaa #### Taf5_ID10101_9 --> 1 - 0 Original Alignment gCTTTGGGCTACCGATCACTATCAGCCTTTGAGGATATTTGCTGGCCATCTTGCTGATGTGAATTGCACTAGATTTCATCCAAATTCGAACTATGTTGCTACGGGCTCTGCAGACAGAACTGTGCGGCTCTGGGATGTCCTCAATGGTAACTGTGTAAGAATCTTCACTGGGCACAAG acctgatgttcatcgagactccctgtctgcttggtttctttcttacacaggCTTTGGACTACTGATCACTATCAACCTTTGAGGATATTTGCTGTTCATCTTGCTGATGTAAACTGCACTAGATTTCATCCTAATTCAAACTGCGTCTCTACAGGCTCAGCAGACAGGACGGCGCGCCTATGGGATGTGCTGAATGGTAACTCTGTGAGAATATACACTGGGCATAAGgtgagctcactttcaagattactttactatgccaatgtttgtcaaaaaca Alignment from CESAR gCTTTGGGCTACCGATCACTATCAGCCTTTGAGGATATTTGCTGGCCATCTTGCTGATGTGAATTGCACTAGATTTCATCCAAATTCGAACTATGTTGCTACGGGCTCTGCAGACAGAACTGTGCGGCTCTGGGATGTCCTCAATGGTAACTGTGTAAGAATCTTCACTGGGCACAAG acctgatgttcatcgagactccctgtctgcttggtttctttcttacacaggCTTTGGACTACTGATCACTATCAACCTTTGAGGATATTTGCTGTTCATCTTGCTGATGTAAACTGCACTAGATTTCATCCTAATTCAAACTGCGTCTCTACAGGCTCAGCAGACAGGACGGCGCGCCTATGGGATGTGCTGAATGGTAACTCTGTGAGAATATACACTGGGCATAAGgtgagctcactttcaagattactttactatgccaatgtttgtcaaaaaca Alignment from Spaln_aa2Genome GCTTTGGGCTACCGATCACTATCAGCCTTTGAGGATATTTGCTGGCCATCTTGCTGATGTGAATTGCACTAGATTTCATCCAAATTCGAACTATGTTGCTACGGGCTCTGCAGACAGAACTGTGCGGCTCTGGGATGTCCTCAATGGTAACTGTGTAAGAATCTTCACTGGGCACAAG acctgatgttcatcgagactccctgtctgcttggtttctttcttacacagGCTTTGGACTACTGATCACTATCAACCTTTGAGGATATTTGCTGTTCATCTTGCTGATGTAAACTGCACTAGATTTCATCCTAATTCAAACTGCGTCTCTACAGGCTCAGCAGACAGGACGGCGCGCCTATGGGATGTGCTGAATGGTAACTCTGTGAGAATATACACTGGGCATAAGgtgagctcactttcaagattactttactatgccaatgtttgtcaaaaaca Alignment from Spaln_nt2Genome GCTTTGGGCTACCGATCACTATCAGCCTTTGAGGATATTTGCTGGCCATCTTGCTGATGTGAATTGCACTAGATTTCATCCAAATTCGAACTATGTTGCTACGGGCTCTGCAGACAGAACTGTGCGGCTCTGGGATGTCCTCAATGGTAACTGTGTAAGAATCTTCACTGGGCACAAG acctgatgttcatcgagactccctgtctgcttggtttctttcttacacagGCTTTGGACTACTGATCACTATCAACCTTTGAGGATATTTGCTGTTCATCTTGCTGATGTAAACTGCACTAGATTTCATCCTAATTCAAACTGCGTCTCTACAGGCTCAGCAGACAGGACGGCGCGCCTATGGGATGTGCTGAATGGTAACTCTGTGAGAATATACACTGGGCATAAGgtgagctcactttcaagattactttactatgccaatgtttgtcaaaaaca Alignment from Pairagon GCTTTGGGCTACCGATCACTATCAGCCTTTGAGGATATTTGCTGGCCATCTTGCTGATGTGAATTGCACTAGATTTCATCCAAATTCGAACTATGTTGCTACGGGCTCTGCAGACAGAACTGTGCGGCTCTGGGATGTCCTCAATGGTAACTGTGTAAGAATCTTCACTGGGCACAAG acctgatgttcatcgagactccctgtctgcttggtttctttcttacacagGCTTTGGACTACTGATCACTATCAACCTTTGAGGATATTTGCTGTTCATCTTGCTGATGTAAACTGCACTAGATTTCATCCTAATTCAAACTGCGTCTCTACAGGCTCAGCAGACAGGACGGCGCGCCTATGGGATGTGCTGAATGGTAACTCTGTGAGAATATACACTGGGCATAAGgtgagctcactttcaagattactttactatgccaatgtttgtcaaaaaca Alignment from Exonerate_protein2genome GCTTTGGGCTACCGATCACTATCAGCCTTTGAGGATATTTGCTGGCCATCTTGCTGATGTGAATTGCACTAGATTTCATCCAAATTCGAACTATGTTGCTACGGGCTCTGCAGACAGAACTGTGCGGCTCTGGGATGTCCTCAATGGTAACTGTGTAAGAATCTTCACTGGGCACAAG acctgatgttcatcgagactccctgtctgcttggtttctttcttacacagGCTTTGGACTACTGATCACTATCAACCTTTGAGGATATTTGCTGTTCATCTTGCTGATGTAAACTGCACTAGATTTCATCCTAATTCAAACTGCGTCTCTACAGGCTCAGCAGACAGGACGGCGCGCCTATGGGATGTGCTGAATGGTAACTCTGTGAGAATATACACTGGGCATAAGgtgagctcactttcaagattactttactatgccaatgtttgtcaaaaaca Alignment from Exonerate_coding2genome GCTTTGGGCTACCGATCACTATCAGCCTTTGAGGATATTTGCTGGCCATCTTGCTGATGTGAATTGCACTAGATTTCATCCAAATTCGAACTATGTTGCTACGGGCTCTGCAGACAGAACTGTGCGGCTCTGGGATGTCCTCAATGGTAACTGTGTAAGAATCTTCACTGGGCACAAG acctgatgttcatcgagactccctgtctgcttggtttctttcttacacagGCTTTGGACTACTGATCACTATCAACCTTTGAGGATATTTGCTGTTCATCTTGCTGATGTAAACTGCACTAGATTTCATCCTAATTCAAACTGCGTCTCTACAGGCTCAGCAGACAGGACGGCGCGCCTATGGGATGTGCTGAATGGTAACTCTGTGAGAATATACACTGGGCATAAGgtgagctcactttcaagattactttactatgccaatgtttgtcaaaaaca Alignment from GeneWise GCTTTGGGCTACCGATCACTATCAGCCTTTGAGGATATTTGCTGGCCATCTTGCTGATGTGAATTGCACTAGATTTCATCCAAATTCGAACTATGTTGCTACGGGCTCTGCAGACAGAACTGTGCGGCTCTGGGATGTCCTCAATGGTAACTGTGTAAGAATCTTCACTGGGCACAAG acctgatgttcatcgagactccctgtctgcttggtttctttcttacacagGCTTTGGACTACTGATCACTATCAACCTTTGAGGATATTTGCTGTTCATCTTGCTGATGTAAACTGCACTAGATTTCATCCTAATTCAAACTGCGTCTCTACAGGCTCAGCAGACAGGACGGCGCGCCTATGGGATGTGCTGAATGGTAACTCTGTGAGAATATACACTGGGCATAAGgtgagctcactttcaagattactttactatgccaatgtttgtcaaaaaca #### Tbc1d10c_ID396_8 --> 2 - 0 Original Alignment ggGCTAAGGTACTGTTCCGCGTGGGGCTGACACTGATGCGCCTGGCACTGGGCACTGTAGAACAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCCCTACGAGCCATTCCCCCTACCCAGCTGCAGGAAGAGGTCTTCATGTCCCAG cctgaggcaaatgtgacttatttttgcactgcaacattgcctgcacacaggtGCAAAGGTGCTGTTCCGTGTAGGCCTTTCACTGATGCGCCTGGCTTTGGGCACTGTAGAGAAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGTGCACTACGTGCTATTCCACCTACCCAACTACAAGAAGAGGTCTTTATGACTCAGgtaattatcactctgcaaaccaacagaggtcctgcctgtgctgcatatga Alignment from CESAR ggGCTAAGGTACTGTTCCGCGTGGGGCTGACACTGATGCGCCTGGCACTGGGCACTGTAGAACAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCCCTACGAGCCATTCCCCCTACCCAGCTGCAGGAAGAGGTCTTCATGTCCCAG cctgaggcaaatgtgacttatttttgcactgcaacattgcctgcacacaggtGCAAAGGTGCTGTTCCGTGTAGGCCTTTCACTGATGCGCCTGGCTTTGGGCACTGTAGAGAAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGTGCACTACGTGCTATTCCACCTACCCAACTACAAGAAGAGGTCTTTATGACTCAGgtaattatcactctgcaaaccaacagaggtcctgcctgtgctgcatatga Alignment from Spaln_aa2Genome GGGCTAAGGTACTGTTCCGCGTGGGGCTGACACTGATGCGCCTGGCACTGGGCACTGTAGAACAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCCCTACGAGCCATTCCCCCTACCCAGCTGCAGGAAGAGGTCTTCATGTCCCAG cctgaggcaaatgtgacttatttttgcactgcaacattgcctgcacacagGTGCAAAGGTGCTGTTCCGTGTAGGCCTTTCACTGATGCGCCTGGCTTTGGGCACTGTAGAGAAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGTGCACTACGTGCTATTCCACCTACCCAACTACAAGAAGAGGTCTTTATGACTCAGgtaattatcactctgcaaaccaacagaggtcctgcctgtgctgcatatga Alignment from Spaln_nt2Genome GGGCTAAGGTACTGTTCCGCGTGGGGCTGACACTGATGCGCCTGGCACTGGGCACTGTAGAACAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCCCTACGAGCCATTCCCCCTACCCAGCTGCAGGAAGAGGTCTTCATGTCCCAG cctgaggcaaatgtgacttatttttgcactgcaacattgcctgcacacagGTGCAAAGGTGCTGTTCCGTGTAGGCCTTTCACTGATGCGCCTGGCTTTGGGCACTGTAGAGAAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGTGCACTACGTGCTATTCCACCTACCCAACTACAAGAAGAGGTCTTTATGACTCAGgtaattatcactctgcaaaccaacagaggtcctgcctgtgctgcatatga Alignment from Pairagon GGGCTAAGGTACTGTTCCGCGTGGGGCTGACACTGATGCGCCTGGCACTGGGCACTGTAGAACAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCCCTACGAGCCATTCCCCCTACCCAGCTGCAGGAAGAGGTCTTCATGTCCCAG cctgaggcaaatgtgacttatttttgcactgcaacattgcctgcacacagGTGCAAAGGTGCTGTTCCGTGTAGGCCTTTCACTGATGCGCCTGGCTTTGGGCACTGTAGAGAAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGTGCACTACGTGCTATTCCACCTACCCAACTACAAGAAGAGGTCTTTATGACTCAGgtaattatcactctgcaaaccaacagaggtcctgcctgtgctgcatatga Alignment from Exonerate_protein2genome GGGCTAAGGTACTGTTCCGCGTGGGGCTGACACTGATGCGCCTGGCACTGGGCACTGTAGAACAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCCCTACGAGCCATTCCCCCTACCCAGCTGCAGGAAGAGGTCTTCATGTCCCAG cctgaggcaaatgtgacttatttttgcactgcaacattgcctgcacacagGTGCAAAGGTGCTGTTCCGTGTAGGCCTTTCACTGATGCGCCTGGCTTTGGGCACTGTAGAGAAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGTGCACTACGTGCTATTCCACCTACCCAACTACAAGAAGAGGTCTTTATGACTCAGgtaattatcactctgcaaaccaacagaggtcctgcctgtgctgcatatga Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGGCTAAGGTACTGTTCCGCGTGGGGCTGACACTGATGCGCCTGGCACTGGGCACTGTAGAACAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCCCTACGAGCCATTCCCCCTACCCAGCTGCAGGAAGAGGTCTTCATGTCCCAG cctgaggcaaatgtgacttatttttgcactgcaacattgcctgcacacagGTGCAAAGGTGCTGTTCCGTGTAGGCCTTTCACTGATGCGCCTGGCTTTGGGCACTGTAGAGAAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGTGCACTACGTGCTATTCCACCTACCCAACTACAAGAAGAGGTCTTTATGACTCAGgtaattatcactctgcaaaccaacagaggtcctgcctgtgctgcatatga #### Tbc1d12_ID7683_6 --> 1 - 1 Original Alignment gCGTAGTACCAGAAGAGTTCGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTAGGAAATGAACTAAATATCACTCCTg actttgtggtacacggtgcattatgggtttgccatggtgctattttctaggCGTAGTACCAGAAGAGTTAGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCCAGCTGTCAGCAATGAACTAAATATAACTCCTggtaagtcttcctatgattagatcttcccttcatagaaatctgtgtcttaa Alignment from CESAR gCGTAGTACCAGAAGAGTTCGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTAGGAAATGAACTAAATATCACTCCTg actttgtggtacacggtgcattatgggtttgccatggtgctattttctaggCGTAGTACCAGAAGAGTTAGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCCAGCTGTCAGCAATGAACTAAATATAACTCCTggtaagtcttcctatgattagatcttcccttcatagaaatctgtgtcttaa Alignment from Spaln_aa2Genome GCGTAGTACCAGAAGAGTTCGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTAGGAAATGAACTAAATATCACTCCTG actttgtggtacacggtgcattatgggtttgccatggtgctattttctagGCGTAGTACCAGAAGAGTTAGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCCAGCTGTCAGCAATGAACTAAATATAACTCCTGgtaagtcttcctatgattagatcttcccttcatagaaatctgtgtcttaa Alignment from Spaln_nt2Genome GCGTAGTACCAGAAGAGTTCGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTAGGAAATGAACTAAATATCACTCCTG actttgtggtacacggtgcattatgggtttgccatggtgctattttctagGCGTAGTACCAGAAGAGTTAGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCCAGCTGTCAGCAATGAACTAAATATAACTCCTGgtaagtcttcctatgattagatcttcccttcatagaaatctgtgtcttaa Alignment from Pairagon GCGTAGTACCAGAAGAGTTCGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTAGGAAATGAACTAAATATCACTCCTG actttgtggtacacggtgcattatgggtttgccatggtgctattttctagGCGTAGTACCAGAAGAGTTAGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCCAGCTGTCAGCAATGAACTAAATATAACTCCTGgtaagtcttcctatgattagatcttcccttcatagaaatctgtgtcttaa Alignment from Exonerate_protein2genome GCGTAGTACCAGAAGAGTTCGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTAGGAAATGAACTAAATATCACTCCTG actttgtggtacacggtgcattatgggtttgccatggtgctattttctagGCGTAGTACCAGAAGAGTTAGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCCAGCTGTCAGCAATGAACTAAATATAACTCCTGgtaagtcttcctatgattagatcttcccttcatagaaatctgtgtcttaa Alignment from Exonerate_coding2genome GCGTAGTACCAGAAGAGTTCGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTAGGAAATGAACTAAATATCACTCCTG actttgtggtacacggtgcattatgggtttgccatggtgctattttctagGCGTAGTACCAGAAGAGTTAGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCCAGCTGTCAGCAATGAACTAAATATAACTCCTGgtaagtcttcctatgattagatcttcccttcatagaaatctgtgtcttaa Alignment from GeneWise GCGTAGTACCAGAAGAGTTCGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTAGGAAATGAACTAAATATCACTCCTG actttgtggtacacggtgcattatgggtttgccatggtgctattttctagGCGTAGTACCAGAAGAGTTAGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCCAGCTGTCAGCAATGAACTAAATATAACTCCTGgtaagtcttcctatgattagatcttcccttcatagaaatctgtgtcttaa #### Tbc1d12_ID7688_11 --> 0 - 2 Original Alignment ATGTTGAAGTATTTTGCAACA------TTTGAAGTATTCTTTGAGGAAAACCTATCCAAACTATTTCTTCATTTCAAGTCGTATAATCTGACACCAGATATATATTTG---ATAGATtg tttgacagtctcctttataactctctatgttttgccttgttttttaatagATGCTGAAGTATTTTGCAACTGCAACATTTGAAGTGTTCTTTGAGGAGAACCTATCTAAATTGTTTCTTCATTTTAAGTCATACAATCTGACACCAGATATATATTCAACAATTGTCtggtaagccactaataacaatttaatagtttcaagttaagatgaacattttt Alignment from CESAR ATGTTGAAGTATTTTGCA------ACATTTGAAGTATTCTTTGAGGAAAACCTATCCAAACTATTTCTTCATTTCAAGTCGTATAATCTGACACCAGATATATATTTG---ATAGATtg tttgacagtctcctttataactctctatgttttgccttgttttttaatagATGCTGAAGTATTTTGCAACTGCAACATTTGAAGTGTTCTTTGAGGAGAACCTATCTAAATTGTTTCTTCATTTTAAGTCATACAATCTGACACCAGATATATATTCAACAATTGTCtggtaagccactaataacaatttaatagtttcaagttaagatgaacattttt Alignment from Spaln_aa2Genome ATGTTGAAGTATTTT------GCAACATTTGAAGTATTCTTTGAGGAAAACCTATCCAAACTATTTCTTCATTTCAAGTCGTATAATCTGACACCAGATATATAT---TTGATAGATTG tttgacagtctcctttataactctctatgttttgccttgttttttaatagATGCTGAAGTATTTTGCAACTGCAACATTTGAAGTGTTCTTTGAGGAGAACCTATCTAAATTGTTTCTTCATTTTAAGTCATACAATCTGACACCAGATATATATTCAACAATTGTCTGgtaagccactaataacaatttaatagtttcaagttaagatgaacattttt Alignment from Spaln_nt2Genome ATGTTGAAGTATTTTGCAAC------ATTTGAAGTATTCTTTGAGGAAAACCTATCCAAACTATTTCTTCATTTCAAGTCGTATAATCTGACACCAGATATATATTTGATAGAT---TG tttgacagtctcctttataactctctatgttttgccttgttttttaatagATGCTGAAGTATTTTGCAACTGCAACATTTGAAGTGTTCTTTGAGGAGAACCTATCTAAATTGTTTCTTCATTTTAAGTCATACAATCTGACACCAGATATATATTCAACAATTGTCTGgtaagccactaataacaatttaatagtttcaagttaagatgaacattttt Alignment from Pairagon ATGTTGAAGTATTT------TGCAACATTTGAAGTATTCTTTGAGGAAAACCTATCCAAACTATTTCTTCATTTCAAGTCGTATAATCTGACACCAGATATATATT-----------TG tttgacagtctcctttataactctctatgttttgccttgttttttaatagATGCTGAAGTATTTTGCAACTGCAACATTTGAAGTGTTCTTTGAGGAGAACCTATCTAAATTGTTTCTTCATTTTAAGTCATACAATCTGACACCAGATATATATTCAACAATTGTCTGgtaagccactaataacaatttaatagtttcaagttaagatgaacattttt Alignment from Exonerate_protein2genome ATGTTGAAGTATTTT------GCAACATTTGAAGTATTCTTTGAGGAAAACCTATCCAAACTATTTCTTCATTTCAAGTCGTATAATCTGACACCAGATATATAT---TTGATAGATTG tttgacagtctcctttataactctctatgttttgccttgttttttaatagATGCTGAAGTATTTTGCAACTGCAACATTTGAAGTGTTCTTTGAGGAGAACCTATCTAAATTGTTTCTTCATTTTAAGTCATACAATCTGACACCAGATATATATTCAACAATTGTCTGgtaagccactaataacaatttaatagtttcaagttaagatgaacattttt Alignment from Exonerate_coding2genome ATGTTGAAGTATTTT------GCAACATTTGAAGTATTCTTTGAGGAAAACCTATCCAAACTATTTCTTCATTTCAAGTCGTATAATCTGACACCAGATATATAT---TTGATAGATTG tttgacagtctcctttataactctctatgttttgccttgttttttaatagATGCTGAAGTATTTTGCAACTGCAACATTTGAAGTGTTCTTTGAGGAGAACCTATCTAAATTGTTTCTTCATTTTAAGTCATACAATCTGACACCAGATATATATTCAACAATTGTCTGgtaagccactaataacaatttaatagtttcaagttaagatgaacattttt Alignment from GeneWise ATGTTGAAGTATTTT------GCAACATTTGAAGTATTCTTTGAGGAAAACCTATCCAAACTATTTCTTCATTTCAAGTCGTATAATCTGACACCAGATATATAT---TTGATAGATTG tttgacagtctcctttataactctctatgttttgccttgttttttaatagATGCTGAAGTATTTTGCAACTGCAACATTTGAAGTGTTCTTTGAGGAGAACCTATCTAAATTGTTTCTTCATTTTAAGTCATACAATCTGACACCAGATATATATTCAACAATTGTCTGgtaagccactaataacaatttaatagtttcaagttaagatgaacattttt #### Tbc1d12_ID7689_12 --> 1 - 0 Original Alignment gATCTTCACATTGTACAGCAAATCACTGCCACTTGATCTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAATTTTTATTTAGGACTGGATTAGGGATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGCACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATTCAGATGCAGAATAGCACCAAGAAATGGACTCAG gactactcaatcggaaaggaacgttatagttgtgttctctctaactgcaggATCTTCACATTGTACAGCGTATCATTGCCACTTGATTTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAGTTCTTATTTCGGACTGGATTGGGTATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGTACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATCCAGATGCGGAATAGCACCAAGAAATGGACTCAGgttagttctgttctgcaccctaaataatgttttaagaatcctcgcaggat Alignment from CESAR gATCTTCACATTGTACAGCAAATCACTGCCACTTGATCTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAATTTTTATTTAGGACTGGATTAGGGATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGCACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATTCAGATGCAGAATAGCACCAAGAAATGGACTCAG gactactcaatcggaaaggaacgttatagttgtgttctctctaactgcaggATCTTCACATTGTACAGCGTATCATTGCCACTTGATTTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAGTTCTTATTTCGGACTGGATTGGGTATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGTACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATCCAGATGCGGAATAGCACCAAGAAATGGACTCAGgttagttctgttctgcaccctaaataatgttttaagaatcctcgcaggat Alignment from Spaln_aa2Genome GATCTTCACATTGTACAGCAAATCACTGCCACTTGATCTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAATTTTTATTTAGGACTGGATTAGGGATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGCACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATTCAGATGCAGAATAGCACCAAGAAATGGACTCAG gactactcaatcggaaaggaacgttatagttgtgttctctctaactgcagGATCTTCACATTGTACAGCGTATCATTGCCACTTGATTTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAGTTCTTATTTCGGACTGGATTGGGTATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGTACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATCCAGATGCGGAATAGCACCAAGAAATGGACTCAGgttagttctgttctgcaccctaaataatgttttaagaatcctcgcaggat Alignment from Spaln_nt2Genome GATCTTCACATTGTACAGCAAATCACTGCCACTTGATCTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAATTTTTATTTAGGACTGGATTAGGGATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGCACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATTCAGATGCAGAATAGCACCAAGAAATGGACTCAG gactactcaatcggaaaggaacgttatagttgtgttctctctaactgcagGATCTTCACATTGTACAGCGTATCATTGCCACTTGATTTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAGTTCTTATTTCGGACTGGATTGGGTATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGTACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATCCAGATGCGGAATAGCACCAAGAAATGGACTCAGgttagttctgttctgcaccctaaataatgttttaagaatcctcgcaggat Alignment from Pairagon ATAGATTGGATCTTCACATTGTACAGCAAATCACTGCCACTTGATCTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAATTTTTATTTAGGACTGGATTAGGGATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGCACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATTCAGATGCAGAATAGCACCAAGAAATGGACTCAG gactactcaatcggaaaggaacgttatagttgtgttctctctaactgcag--------GATCTTCACATTGTACAGCGTATCATTGCCACTTGATTTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAGTTCTTATTTCGGACTGGATTGGGTATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGTACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATCCAGATGCGGAATAGCACCAAGAAATGGACTCAGgttagttctgttctgcaccctaaataatgttttaagaatcctcgcaggat Alignment from Exonerate_protein2genome GATCTTCACATTGTACAGCAAATCACTGCCACTTGATCTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAATTTTTATTTAGGACTGGATTAGGGATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGCACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATTCAGATGCAGAATAGCACCAAGAAATGGACTCAG gactactcaatcggaaaggaacgttatagttgtgttctctctaactgcagGATCTTCACATTGTACAGCGTATCATTGCCACTTGATTTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAGTTCTTATTTCGGACTGGATTGGGTATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGTACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATCCAGATGCGGAATAGCACCAAGAAATGGACTCAGgttagttctgttctgcaccctaaataatgttttaagaatcctcgcaggat Alignment from Exonerate_coding2genome GATCTTCACATTGTACAGCAAATCACTGCCACTTGATCTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAATTTTTATTTAGGACTGGATTAGGGATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGCACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATTCAGATGCAGAATAGCACCAAGAAATGGACTCAG gactactcaatcggaaaggaacgttatagttgtgttctctctaactgcagGATCTTCACATTGTACAGCGTATCATTGCCACTTGATTTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAGTTCTTATTTCGGACTGGATTGGGTATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGTACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATCCAGATGCGGAATAGCACCAAGAAATGGACTCAGgttagttctgttctgcaccctaaataatgttttaagaatcctcgcaggat Alignment from GeneWise GATCTTCACATTGTACAGCAAATCACTGCCACTTGATCTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAATTTTTATTTAGGACTGGATTAGGGATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGCACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATTCAGATGCAGAATAGCACCAAGAAATGGACTCAG gactactcaatcggaaaggaacgttatagttgtgttctctctaactgcagGATCTTCACATTGTACAGCGTATCATTGCCACTTGATTTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAGTTCTTATTTCGGACTGGATTGGGTATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGTACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATCCAGATGCGGAATAGCACCAAGAAATGGACTCAGgttagttctgttctgcaccctaaataatgttttaagaatcctcgcaggat #### Tcirg1_ID171_16 --> 0 - 0 Original Alignment GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagacaatttcaggagactgctttcttgaaaccccccacatagGATGAGGACACGGAGAAGCTACTTGCTTCCCCAGATGCAACAACCTTGGAGAATAGTTGGAGCCCCGATGAGGAAGTAGCTGGAAGTCCTGGGGAAGAGGAGACTGATgtaagtgactaagggttgcaaagaatggcctgccagccagattagttgct Alignment from CESAR GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagacaatttcaggagactgctttcttgaaaccccccacatagGATGAGGACACGGAGAAGCTACTTGCTTCCCCAGATGCAACAACCTTGGAGAATAGTTGGAGCCCCGATGAGGAAGTAGCTGGAAGTCCTGGGGAAGAGGAGACTGATgtaagtgactaagggttgcaaagaatggcctgccagccagattagttgct Alignment from Spaln_aa2Genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagacaatttcaggagactgctttcttgaaaccccccacatagGATGAGGACACGGAGAAGCTACTTGCTTCCCCAGATGCAACAACCTTGGAGAATAGTTGGAGCCCCGATGAGGAAGTAGCTGGAAGTCCTGGGGAAGAGGAGACTGATgtaagtgactaagggttgcaaagaatggcctgccagccagattagttgct Alignment from Spaln_nt2Genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagacaatttcaggagactgctttcttgaaaccccccacatagGATGAGGACACGGAGAAGCTACTTGCTTCCCCAGATGCAACAACCTTGGAGAATAGTTGGAGCCCCGATGAGGAAGTAGCTGGAAGTCCTGGGGAAGAGGAGACTGATgtaagtgactaagggttgcaaagaatggcctgccagccagattagttgct Alignment from Pairagon GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagacaatttcaggagactgctttcttgaaaccccccacatagGATGAGGACACGGAGAAGCTACTTGCTTCCCCAGATGCAACAACCTTGGAGAATAGTTGGAGCCCCGATGAGGAAGTAGCTGGAAGTCCTGGGGAAGAGGAGACTGATgtaagtgactaagggttgcaaagaatggcctgccagccagattagttgct Alignment from Exonerate_protein2genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagacaatttcaggagactgctttcttgaaaccccccacatagGATGAGGACACGGAGAAGCTACTTGCTTCCCCAGATGCAACAACCTTGGAGAATAGTTGGAGCCCCGATGAGGAAGTAGCTGGAAGTCCTGGGGAAGAGGAGACTGATgtaagtgactaagggttgcaaagaatggcctgccagccagattagttgct Alignment from Exonerate_coding2genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagacaatttcaggagactgctttcttgaaaccccccacatagGATGAGGACACGGAGAAGCTACTTGCTTCCCCAGATGCAACAACCTTGGAGAATAGTTGGAGCCCCGATGAGGAAGTAGCTGGAAGTCCTGGGGAAGAGGAGACTGATgtaagtgactaagggttgcaaagaatggcctgccagccagattagttgct Alignment from GeneWise GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagacaatttcaggagactgctttcttgaaaccccccacatagGATGAGGACACGGAGAAGCTACTTGCTTCCCCAGATGCAACAACCTTGGAGAATAGTTGGAGCCCCGATGAGGAAGTAGCTGGAAGTCCTGGGGAAGAGGAGACTGATgtaagtgactaagggttgcaaagaatggcctgccagccagattagttgct #### Tcirg1_ID173_14 --> 1 - 0 Original Alignment gCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctgatgagaataatacttttgtgcttttgatttcaggCACTTTGGTGAGGCCCACAGGCTGCTGCTTGGGACGTTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TATCTGGTGCTCCTGATTCTCTACAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCAGCCCCC------ATTATTCACTTCATCAAT---TTCCTCTTCTCCCAGAACCCC---AATCATCTGCTGTTCCATGGGCAGgtaatgagtgtatgaccggtgattctagtgtcatatagcataatctgaca Alignment from CESAR gCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctgatgagaataatacttttgtgcttttgatttcaggCACTTTGGTGAGGCCCACAGGCTGCTGCTTGGGACGTTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TATCTGGTGCTCCTGATTCTCTACAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCAGCCCCC------ATTATTCACTTCATCAAT---TTCCTCTTCTCCCAGAACCCC---AATCATCTGCTGTTCCATGGGCAGgtaatgagtgtatgaccggtgattctagtgtcatatagcataatctgaca Alignment from Spaln_aa2Genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctgatgagaataatacttttgtgcttttgatttcagGCACTTTGGTGAGGCCCACAGGCTGCTGCTTGGGACGTTGTCAGAGCTCATCTTCCTCCTGGGCCTCTAT------CTGGTGCTCCTGATTCTCTACAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCAGCCCCC------ATTATTCACTTCATCAAT---TTCCTCTTCTCCCAGAACCCC---AATCATCTGCTGTTCCATGGGCAGgtaatgagtgtatgaccggtgattctagtgtcatatagcataatctgaca Alignment from Spaln_nt2Genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctgatgagaataatacttttgtgcttttgatttcagGCACTTTGGTGAGGCCCACAGGCTGCTGCTTGGGACGTTGTCAGAGCTCATCTTCCTCCTGGGCCT------CTATCTGGTGCTCCTGATTCTCTACAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCAGCCCCCA------TTATTCACTTCATCAAT---TTCCTCTTCTCCCAGAACC---CCAATCATCTGCTGTTCCATGGGCAGgtaatgagtgtatgaccggtgattctagtgtcatatagcataatctgaca Alignment from Pairagon GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctgatgagaataatacttttgtgcttttgatttcagGCACTTTGGTGAGGCCCACAGGCTGCTGCTTGGGACGTTGTCAGAGCTCATCTTCCTCCTGGGCCT------CTATCTGGTGCTCCTGATTCTCTACAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCAGCCCCCA------TTATTCACTTCATCAAT---TTCCTCTTCTCCCAGAACC---CCAATCATCTGCTGTTCCATGGGCAGgtaatgagtgtatgaccggtgattctagtgtcatatagcataatctgaca Alignment from Exonerate_protein2genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctgatgagaataatacttttgtgcttttgatttcagGCACTTTGGTGAGGCCCACAGGCTGCTGCTTGGGACGTTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TATCTGGTGCTCCTGATTCTCTACAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCAGCCCCC------ATTATTCACTTCATCAAT---TTCCTCTTCTCCCAGAACCCC---AATCATCTGCTGTTCCATGGGCAGgtaatgagtgtatgaccggtgattctagtgtcatatagcataatctgaca Alignment from Exonerate_coding2genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctgatgagaataatacttttgtgcttttgatttcagGCACTTTGGTGAGGCCCACAGGCTGCTGCTTGGGACGTTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TATCTGGTGCTCCTGATTCTCTACAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCAGCCCCC------ATTATTCACTTCATCAAT---TTCCTCTTCTCCCAGAACCCC---AATCATCTGCTGTTCCATGGGCAGgtaatgagtgtatgaccggtgattctagtgtcatatagcataatctgaca Alignment from GeneWise GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agtcttgcctcatcctgatgagaataatacttttgtgcttttgatttcagGCACTTTGGTGAGGCCCACAGGCTGCTGCTTGGGACGTTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TATCTGGTGCTCCTGATTCTCTACAAATGGGTAAACATCTCAGCAACTAGTTCTGCCTCAGCCCCC------ATTATTCACTTCATCAAT---TTCCTCTTCTCCCAGAACCCC---AATCATCTGCTGTTCCATGGGCAGgtaatgagtgtatgaccggtgattctagtgtcatatagcataatctgaca #### Tcirg1_ID177_10 --> 2 - 0 Original Alignment ctCCCTACACCATCATCACATTCCCCTTTCTCTTCGCTGTGATGTTTGGCGATGTGGGGCACGGACTGCTCATGTTTCTCTTTGCCCTGGCCATGGTCCTCACTGAAAACCGTCCAGCTGTGAAGGCTGCACAAAACGAG tcactctaatagtcatgttgagcctgtcctttggcgttgctgtctttcagctCCCTACACTGTCACCACTTTCCCATTTCTATTCACTGTGATGTTTGGCGATGTTGGACATGGATTGCTTATGTTTCTTTTTGCCCTAGCAATGGTCCTCACTGATAACCACCCAGCTGTGAAAACTGCAGAAAACCAGgtaagtgttttcattgacctatcagaaacaagagagagagacaaaccaaa Alignment from CESAR ctCCCTACACCATCATCACATTCCCCTTTCTCTTCGCTGTGATGTTTGGCGATGTGGGGCACGGACTGCTCATGTTTCTCTTTGCCCTGGCCATGGTCCTCACTGAAAACCGTCCAGCTGTGAAGGCTGCACAAAACGAG tcactctaatagtcatgttgagcctgtcctttggcgttgctgtctttcagctCCCTACACTGTCACCACTTTCCCATTTCTATTCACTGTGATGTTTGGCGATGTTGGACATGGATTGCTTATGTTTCTTTTTGCCCTAGCAATGGTCCTCACTGATAACCACCCAGCTGTGAAAACTGCAGAAAACCAGgtaagtgttttcattgacctatcagaaacaagagagagagacaaaccaaa Alignment from Spaln_aa2Genome CTCCCTACACCATCATCACATTCCCCTTTCTCTTCGCTGTGATGTTTGGCGATGTGGGGCACGGACTGCTCATGTTTCTCTTTGCCCTGGCCATGGTCCTCACTGAAAACCGTCCAGCTGTGAAGGCTGCACAAAACGAG tcactctaatagtcatgttgagcctgtcctttggcgttgctgtctttcagCTCCCTACACTGTCACCACTTTCCCATTTCTATTCACTGTGATGTTTGGCGATGTTGGACATGGATTGCTTATGTTTCTTTTTGCCCTAGCAATGGTCCTCACTGATAACCACCCAGCTGTGAAAACTGCAGAAAACCAGgtaagtgttttcattgacctatcagaaacaagagagagagacaaaccaaa Alignment from Spaln_nt2Genome CTCCCTACACCATCATCACATTCCCCTTTCTCTTCGCTGTGATGTTTGGCGATGTGGGGCACGGACTGCTCATGTTTCTCTTTGCCCTGGCCATGGTCCTCACTGAAAACCGTCCAGCTGTGAAGGCTGCACAAAACGAG tcactctaatagtcatgttgagcctgtcctttggcgttgctgtctttcagCTCCCTACACTGTCACCACTTTCCCATTTCTATTCACTGTGATGTTTGGCGATGTTGGACATGGATTGCTTATGTTTCTTTTTGCCCTAGCAATGGTCCTCACTGATAACCACCCAGCTGTGAAAACTGCAGAAAACCAGgtaagtgttttcattgacctatcagaaacaagagagagagacaaaccaaa Alignment from Pairagon CTCCCTACACCATCATCACATTCCCCTTTCTCTTCGCTGTGATGTTTGGCGATGTGGGGCACGGACTGCTCATGTTTCTCTTTGCCCTGGCCATGGTCCTCACTGAAAACCGTCCAGCTGTGAAGGCTGCACAAAACGAG tcactctaatagtcatgttgagcctgtcctttggcgttgctgtctttcagCTCCCTACACTGTCACCACTTTCCCATTTCTATTCACTGTGATGTTTGGCGATGTTGGACATGGATTGCTTATGTTTCTTTTTGCCCTAGCAATGGTCCTCACTGATAACCACCCAGCTGTGAAAACTGCAGAAAACCAGgtaagtgttttcattgacctatcagaaacaagagagagagacaaaccaaa Alignment from Exonerate_protein2genome CTCCCTACACCATCATCACATTCCCCTTTCTCTTCGCTGTGATGTTTGGCGATGTGGGGCACGGACTGCTCATGTTTCTCTTTGCCCTGGCCATGGTCCTCACTGAAAACCGTCCAGCTGTGAAGGCTGCACAAAACGAG tcactctaatagtcatgttgagcctgtcctttggcgttgctgtctttcagCTCCCTACACTGTCACCACTTTCCCATTTCTATTCACTGTGATGTTTGGCGATGTTGGACATGGATTGCTTATGTTTCTTTTTGCCCTAGCAATGGTCCTCACTGATAACCACCCAGCTGTGAAAACTGCAGAAAACCAGgtaagtgttttcattgacctatcagaaacaagagagagagacaaaccaaa Alignment from Exonerate_coding2genome CTCCCTACACCATCATCACATTCCCCTTTCTCTTCGCTGTGATGTTTGGCGATGTGGGGCACGGACTGCTCATGTTTCTCTTTGCCCTGGCCATGGTCCTCACTGAAAACCGTCCAGCTGTGAAGGCTGCACAAAACGAG tcactctaatagtcatgttgagcctgtcctttggcgttgctgtctttcagCTCCCTACACTGTCACCACTTTCCCATTTCTATTCACTGTGATGTTTGGCGATGTTGGACATGGATTGCTTATGTTTCTTTTTGCCCTAGCAATGGTCCTCACTGATAACCACCCAGCTGTGAAAACTGCAGAAAACCAGgtaagtgttttcattgacctatcagaaacaagagagagagacaaaccaaa Alignment from GeneWise CTCCCTACACCATCATCACATTCCCCTTTCTCTTCGCTGTGATGTTTGGCGATGTGGGGCACGGACTGCTCATGTTTCTCTTTGCCCTGGCCATGGTCCTCACTGAAAACCGTCCAGCTGTGAAGGCTGCACAAAACGAG tcactctaatagtcatgttgagcctgtcctttggcgttgctgtctttcagCTCCCTACACTGTCACCACTTTCCCATTTCTATTCACTGTGATGTTTGGCGATGTTGGACATGGATTGCTTATGTTTCTTTTTGCCCTAGCAATGGTCCTCACTGATAACCACCCAGCTGTGAAAACTGCAGAAAACCAGgtaagtgttttcattgacctatcagaaacaagagagagagacaaaccaaa #### Tcirg1_ID180_7 --> 1 - 0 Original Alignment cTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCTGG tgtcaataatcctgaattcaagaccagagacaccgctcctgtgtccgcagcTTTCACTGCCATGTCTTCTCATATCTGGAACAGGAGGAAGCCCGGTTTAGGACCTCACAGCAGTTACAGCAGCAGAGTCAGGAACTCCAAGAGgtatgttgttcatcaaggatggccttctgtctcattgtgctagGTCCTAG Alignment from CESAR cTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCTGG tgtcaataatcctgaattcaagaccagagacaccgctcctgtgtccgcagcTTTCACTGCCATGTCTTCTCATATCTGGAACAGGAGGAAGCCCGGTTTAGGACCTCACAGCAGTTACAGCAGCAGAGTCAGGAACTCCAAGAGgtatgttgttcatcaaggatggttctttgtctttataccacagGTCCTAG Alignment from Spaln_aa2Genome CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCTGG tgtcaataatcctgaattcaagaccagagacaccgctcctgtgtccgcagCTTTCACTGCCATGTCTTCTCATATCTGGAACAGGAGGAAGCCCGGTTTAGGACCTCACAGCAGTTACAGCAGCAGAGTCAGGAACTCCAAGAGgtatgttgttcatcaaggatggccttctgtctcattgtgctagGTCCTAG Alignment from Spaln_nt2Genome CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCTGG tgtcaataatcctgaattcaagaccagagacaccgctcctgtgtccgcagCTTTCACTGCCATGTCTTCTCATATCTGGAACAGGAGGAAGCCCGGTTTAGGACCTCACAGCAGTTACAGCAGCAGAGTCAGGAACTCCAAGAGgtatgttgttcatcaaggatggccttctgtctcattgtgctagGTCCTAG Alignment from Pairagon CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCTGG tgtcaataatcctgaattcaagaccagagacaccgctcctgtgtccgcagCTTTCACTGCCATGTCTTCTCATATCTGGAACAGGAGGAAGCCCGGTTTAGGACCTCACAGCAGTTACAGCAGCAGAGTCAGGAACTCCAAGAGgtatgttgttcatcaaggatggccttctgtctcattgtgctagGTCCTAG Alignment from Exonerate_protein2genome CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCTGG tgtcaataatcctgaattcaagaccagagacaccgctcctgtgtccgcagCTTTCACTGCCATGTCTTCTCATATCTGGAACAGGAGGAAGCCCGGTTTAGGACCTCACAGCAGTTACAGCAGCAGAGTCAGGAACTCCAAGAGgtatgttgttcatcaaggatggccttctgtctcattgtgctagGTCCTAG Alignment from Exonerate_coding2genome CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCTGG tgtcaataatcctgaattcaagaccagagacaccgctcctgtgtccgcagCTTTCACTGCCATGTCTTCTCATATCTGGAACAGGAGGAAGCCCGGTTTAGGACCTCACAGCAGTTACAGCAGCAGAGTCAGGAACTCCAAGAGgtatgttgttcatcaaggatggccttctgtctcattgtgctagGTCCTAG Alignment from GeneWise CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCTGG tgtcaataatcctgaattcaagaccagagacaccgctcctgtgtccgcagCTTTCACTGCCATGTCTTCTCATATCTGGAACAGGAGGAAGCCCGGTTTAGGACCTCACAGCAGTTACAGCAGCAGAGTCAGGAACTCCAAGAGgtatgttgttcatcaaggatggccttctgtctcattgtgctagGTCCTAG #### Tcirg1_ID183_4 --> 0 - 2 Original Alignment GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCaa cacagacacaacctcacagtgtacatgctcaattacttcactgtttctagGTGGCAGCTGACCATACTGAAGGTCCTCTCTCAGAAACAACACCCCTTCTTCCAGGCACACGGGGTCCACATTCTGACCTGAAAGTTaagtaagatgaagcatccaagcttttttgacattctcacattcacactctgc Alignment from CESAR GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCaa cacagacacaacctcacagtgtacatgctcaattacttcactgtttctagGTGGCAGCTGACCATACTGAAGGTCCTCTCTCAGAAACAACACCCCTTCTTCCAGGCACACGGGGTCCACATTCTGACCTGAAAGTTaagtaagatgaagcatccaagcttttttgacattctcacattcacactctgc Alignment from Spaln_aa2Genome GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA cacagacacaacctcacagtgtacatgctcaattacttcactgtttctagGTGGCAGCTGACCATACTGAAGGTCCTCTCTCAGAAACAACACCCCTTCTTCCAGGCACACGGGGTCCACATTCTGACCTGAAAGTTAAgtaagatgaagcatccaagcttttttgacattctcacattcacactctgc Alignment from Spaln_nt2Genome GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA cacagacacaacctcacagtgtacatgctcaattacttcactgtttctagGTGGCAGCTGACCATACTGAAGGTCCTCTCTCAGAAACAACACCCCTTCTTCCAGGCACACGGGGTCCACATTCTGACCTGAAAGTTAAgtaagatgaagcatccaagcttttttgacattctcacattcacactctgc Alignment from Pairagon GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA cacagacacaacctcacagtgtacatgctcaattacttcactgtttctagGTGGCAGCTGACCATACTGAAGGTCCTCTCTCAGAAACAACACCCCTTCTTCCAGGCACACGGGGTCCACATTCTGACCTGAAAGTTAAgtaagatgaagcatccaagcttttttgacattctcacattcacactctgc Alignment from Exonerate_protein2genome GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA cacagacacaacctcacagtgtacatgctcaattacttcactgtttctagGTGGCAGCTGACCATACTGAAGGTCCTCTCTCAGAAACAACACCCCTTCTTCCAGGCACACGGGGTCCACATTCTGACCTGAAAGTTAAgtaagatgaagcatccaagcttttttgacattctcacattcacactctgc Alignment from Exonerate_coding2genome GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA cacagacacaacctcacagtgtacatgctcaattacttcactgtttctagGTGGCAGCTGACCATACTGAAGGTCCTCTCTCAGAAACAACACCCCTTCTTCCAGGCACACGGGGTCCACATTCTGACCTGAAAGTTAAgtaagatgaagcatccaagcttttttgacattctcacattcacactctgc Alignment from GeneWise GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA cacagacacaacctcacagtgtacatgctcaattacttcactgtttctagGTGGCAGCTGACCATACTGAAGGTCCTCTCTCAGAAACAACACCCCTTCTTCCAGGCACACGGGGTCCACATTCTGACCTGAAAGTTAAgtaagatgaagcatccaagcttttttgacattctcacattcacactctgc #### Tcirg1_ID184_3 --> 2 - 0 Original Alignment ccTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG ttgtgtgttcgtggaatttcttctggtcgatgttgtttgtgtttctttagccTTCCTAAAAGAAGAAGTGCCCTGGGCTAGTCTAACCCTTGCCCCACCTGAGGGTACATTACCAGCACCACCCCCAAGGGACCTACTTCGCATCCAGGAAGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCTCAGCTGCACCATTTACGGCTATACTCATCTGTGCTAGGCCAGAGCCACAGCCCACCAgtgagttcctagtcaaaaaagccctccaccagtttgttcttagttggagc Alignment from CESAR ccTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG ttgtgtgttcgtggaatttcttctggtcgatgttgtttgtgtttctttagccTTCCTAAAAGAAGAAGTGCCCTGGGCTAGTCTAACCCTTGCCCCACCTGAGGGTACATTACCAGCACCACCCCCAAGGGACCTACTTCGCATCCAGGAAGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCTCAGCTGCACCATTTACGGCTATACTCATCTGTGCTAGGCCAGAGCCACAGCCCACCAgtgagttcctagtcaaaaaagccctccaccagtttgttcttagttggagc Alignment from Spaln_aa2Genome TTTACCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG tgtgttcgtggaatttcttctggtcgatgttgtttgtgtttcttta gCCTTCCTAAAAGAAGAAGTGCCCTGGGCTAGTCTAACCCTTGCCCCACCTGAGGGTACATTACCAGCACCACCCCCAAGGGACCTACTTCGCATCCAGGAAGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCTCAGCTGCACCATTTACGGCTATACTCATCTGTGCTAGGCCAGAGCCACAGCCCACCAgtgagttcctagtcaaaaaagccctccaccagtttgttcttagttggagc Alignment from Spaln_nt2Genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG ttgtgtgttcgtggaatttcttctggtcgatgttgtttgtgtttctttagCCTTCCTAAAAGAAGAAGTGCCCTGGGCTAGTCTAACCCTTGCCCCACCTGAGGGTACATTACCAGCACCACCCCCAAGGGACCTACTTCGCATCCAGGAAGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCTCAGCTGCACCATTTACGGCTATACTCATCTGTGCTAGGCCAGAGCCACAGCCCACCAgtgagttcctagtcaaaaaagccctccaccagtttgttcttagttggagc Alignment from Pairagon CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG ttgtgtgttcgtggaatttcttctggtcgatgttgtttgtgtttctttagCCTTCCTAAAAGAAGAAGTGCCCTGGGCTAGTCTAACCCTTGCCCCACCTGAGGGTACATTACCAGCACCACCCCCAAGGGACCTACTTCGCATCCAGGAAGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCTCAGCTGCACCATTTACGGCTATACTCATCTGTGCTAGGCCAGAGCCACAGCCCACCAgtgagttcctagtcaaaaaagccctccaccagtttgttcttagttggagc Alignment from Exonerate_protein2genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG ttgtgtgttcgtggaatttcttctggtcgatgttgtttgtgtttctttagCCTTCCTAAAAGAAGAAGTGCCCTGGGCTAGTCTAACCCTTGCCCCACCTGAGGGTACATTACCAGCACCACCCCCAAGGGACCTACTTCGCATCCAGGAAGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCTCAGCTGCACCATTTACGGCTATACTCATCTGTGCTAGGCCAGAGCCACAGCCCACCAgtgagttcctagtcaaaaaagccctccaccagtttgttcttagttggagc Alignment from Exonerate_coding2genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG ttgtgtgttcgtggaatttcttctggtcgatgttgtttgtgtttctttagCCTTCCTAAAAGAAGAAGTGCCCTGGGCTAGTCTAACCCTTGCCCCACCTGAGGGTACATTACCAGCACCACCCCCAAGGGACCTACTTCGCATCCAGGAAGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCTCAGCTGCACCATTTACGGCTATACTCATCTGTGCTAGGCCAGAGCCACAGCCCACCAgtgagttcctagtcaaaaaagccctccaccagtttgttcttagttggagc Alignment from GeneWise CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG ttgtgtgttcgtggaatttcttctggtcgatgttgtttgtgtttctttagCCTTCCTAAAAGAAGAAGTGCCCTGGGCTAGTCTAACCCTTGCCCCACCTGAGGGTACATTACCAGCACCACCCCCAAGGGACCTACTTCGCATCCAGGAAGAGACAGATCGCTTGGCCCCTGAGCTTCAGGATGTCCATGGTAATCAGGAGGCACTGCAGGCTCAGCTGCACCATTTACGGCTATACTCATCTGTGCTAGGCCAGAGCCACAGCCCACCAgtgagttcctagtcaaaaaagccctccaccagtttgttcttagttggagc #### Tctn3_ID7996_5 --> 0 - 1 Original Alignment GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAg gtTTCCTAGAGAGTAAAAGCA gccatttaaagataccattttttcagttgttcctacctctgtcttcacagGCTGGGGATCCCATCCTGACCTACTACCCAAGCTGGTCCGTGGTAAGCTTACTAAGACAACCTGCAGCTGTAGGAGCTGGTGGACTTTGTGCAGAGAGCAACCCAGCAggtaagttcatgtttgtatttctccaccaggaTTTCTAGAGACTAAGAGTA Alignment from CESAR GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAg gtTTCCTAGAGAGTAAAAGCA gccatttaaagataccattttttcagttgttcctacctctgtcttcacagGCTGGGGATCCCATCCTGACCTACTACCCAAGCTGGTCCGTGGTAAGCTTACTAAGACAACCTGCAGCTGTAGGAGCTGGTGGACTTTGTGCAGAGAGCAACCCAGCAggtaatgttgtttggtttctatttctttaggaTTTCTAGAGACTAAGAGTA Alignment from Spaln_aa2Genome GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCA-----------------------------GGTTTCCTAGAGAGTAAAAGCA gccatttaaagataccattttttcagttgttcctacctctgtcttcacagGCTGGGGATCCCATCCTGACCTACTACCCAAGCTGGTCCGTGGTAAGCTTACTAAGACAACCTGCAGCTGTAGGAGCTGGTGGACTTTGTGCAGAGAGCAACCCAGCAGGTAAGTTCATGTTTGTATTTCTCCACcaGGATTTCTAGAGACTAAGAGTA Alignment from Spaln_nt2Genome GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCA GGTTTCCTAGAGAGTAAAAGC gccatttaaagataccattttttcagttgttcctacctctgtcttcacagGCTGGGGATCCCATCCTGACCTACTACCCAAGCTGGTCCGTGGTAAGCTTACTAAGACAACCTGCAGCTGTAGGAGCTGGTGGACTTTGTGCAGAGAGCAACC---CAgcaggtaagttcatgtttgtatttctccaccagGATTT-CTAGAGACTAAGAGT Alignment from Pairagon GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG-----------------------------GTTTCCTAGAGAGTAAAAGCA gccatttaaagataccattttttcagttgttcctacctctgtcttcacagGCTGGGGATCCCATCCTGACCTACTACCCAAGCTGGTCCGTGGTAAGCTTACTAAGACAACCTGCAGCTGTAGGAGCTGGTGGACTTTGTGCAGAGAGCAACCCAGCAGGTAAGTTCATGTTTGTATTTCTCCACCAGGATTTCTAGAGACTAAGAGTA Alignment from Exonerate_protein2genome GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAGGTT TCCTAGAGAGTAAAAGCA gccatttaaagataccattttttcagttgttcctacctctgtcttcacagGCTGGGGATCCCATCCTGACCTACTACCCAAGCTGGTCCGTGGTAAGCTTACTAAGACAACCTGCAGCTGTAGGAGCTGGTGGACTTTGTGCAGAGAGCAACCCAGCA---GgtaagttcatgtttgtatttctccaccaggatTTCTAGAGACTAAGAGTA Alignment from Exonerate_coding2genome GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAGGTT TCCTAGAGAGTAAAAGCA gccatttaaagataccattttttcagttgttcctacctctgtcttcacagGCTGGGGATCCCATCCTGACCTACTACCCAAGCTGGTCCGTGGTAAGCTTACTAAGACAACCTGCAGCTGTAGGAGCTGGTGGACTTTGTGCAGAGAGCAACCCAGCA---GgtaagttcatgtttgtatttctccaccaggatTTCTAGAGACTAAGAGTA Alignment from GeneWise GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG GTTTCCTAGAGAGTAAAAGCA gccatttaaagataccattttttcagttgttcctacctctgtcttcacagGCTGGGGATCCCATCCTGACCTACTACCCAAGCTGGTCCGTGGTAAGCTTACTAAGACAACCTGCAGCTGTAGGAGCTGGTGGACTTTGTGCAGAGAGCAACCCAGCAGgtaagttcatgtttgtatttctccaccagGATTTCTAGAGACTAAGAGTA #### Tctn3_ID7998_3 --> 1 - 1 Original Alignment aTCTTCAAGTTGGGTATGTGTGGACAACTCTCTTATGTTCAGGAGCAACTCCCCGTTCCCTTCCAGAGTTTTCACGGACTCCAGTGGAACGACACAGTTTTGTGTCCGTGTGAACAACt cctcataaatcgctacctttctctcttcgtactttctcctctgtttacaggTCATCAAGTTGGGTATGTGTTGGCAACTCTCTAATGTTTCGAAGTAACTCCCCATTCCCATCCAGAGTTTTCACTGACTCCAGTGGAACAACACAATTTTGCATCCGCGTGAACAACtgtgagtagaaatgatcttaaacatatgtcagacatctacaaacccactcc Alignment from CESAR aTCTTCAAGTTGGGTATGTGTGGACAACTCTCTTATGTTCAGGAGCAACTCCCCGTTCCCTTCCAGAGTTTTCACGGACTCCAGTGGAACGACACAGTTTTGTGTCCGTGTGAACAACt cctcataaatcgctacctttctctcttcgtactttctcctctgtttacaggTCATCAAGTTGGGTATGTGTTGGCAACTCTCTAATGTTTCGAAGTAACTCCCCATTCCCATCCAGAGTTTTCACTGACTCCAGTGGAACAACACAATTTTGCATCCGCGTGAACAACtgtgagtagaaatgatcttaaacatatgtcagacatctacaaacccactcc Alignment from Spaln_aa2Genome ATCTTCAAGTTGGGTATGTGTGGACAACTCTCTTATGTTCAGGAGCAACTCCCCGTTCCCTTCCAGAGTTTTCACGGACTCCAGTGGAACGACACAGTTTTGTGTCCGTGTGAACAACT cctcataaatcgctacctttctctcttcgtactttctcctctgtttacagGTCATCAAGTTGGGTATGTGTTGGCAACTCTCTAATGTTTCGAAGTAACTCCCCATTCCCATCCAGAGTTTTCACTGACTCCAGTGGAACAACACAATTTTGCATCCGCGTGAACAACTgtgagtagaaatgatcttaaacatatgtcagacatctacaaacccactcc Alignment from Spaln_nt2Genome ATCTTCAAGTTGGGTATGTGTGGACAACTCTCTTATGTTCAGGAGCAACTCCCCGTTCCCTTCCAGAGTTTTCACGGACTCCAGTGGAACGACACAGTTTTGTGTCCGTGTGAACAACT cctcataaatcgctacctttctctcttcgtactttctcctctgtttacagGTCATCAAGTTGGGTATGTGTTGGCAACTCTCTAATGTTTCGAAGTAACTCCCCATTCCCATCCAGAGTTTTCACTGACTCCAGTGGAACAACACAATTTTGCATCCGCGTGAACAACTgtgagtagaaatgatcttaaacatatgtcagacatctacaaacccactcc Alignment from Pairagon ATCTTCAAGTTGGGTATGTGTGGACAACTCTCTTATGTTCAGGAGCAACTCCCCGTTCCCTTCCAGAGTTTTCACGGACTCCAGTGGAACGACACAGTTTTGTGTCCGTGTGAACAACT cctcataaatcgctacctttctctcttcgtactttctcctctgtttacagGTCATCAAGTTGGGTATGTGTTGGCAACTCTCTAATGTTTCGAAGTAACTCCCCATTCCCATCCAGAGTTTTCACTGACTCCAGTGGAACAACACAATTTTGCATCCGCGTGAACAACTgtgagtagaaatgatcttaaacatatgtcagacatctacaaacccactcc Alignment from Exonerate_protein2genome ATCTTCAAGTTGGGTATGTGTGGACAACTCTCTTATGTTCAGGAGCAACTCCCCGTTCCCTTCCAGAGTTTTCACGGACTCCAGTGGAACGACACAGTTTTGTGTCCGTGTGAACAACT cctcataaatcgctacctttctctcttcgtactttctcctctgtttacagGTCATCAAGTTGGGTATGTGTTGGCAACTCTCTAATGTTTCGAAGTAACTCCCCATTCCCATCCAGAGTTTTCACTGACTCCAGTGGAACAACACAATTTTGCATCCGCGTGAACAACTgtgagtagaaatgatcttaaacatatgtcagacatctacaaacccactcc Alignment from Exonerate_coding2genome ATCTTCAAGTTGGGTATGTGTGGACAACTCTCTTATGTTCAGGAGCAACTCCCCGTTCCCTTCCAGAGTTTTCACGGACTCCAGTGGAACGACACAGTTTTGTGTCCGTGTGAACAACT cctcataaatcgctacctttctctcttcgtactttctcctctgtttacagGTCATCAAGTTGGGTATGTGTTGGCAACTCTCTAATGTTTCGAAGTAACTCCCCATTCCCATCCAGAGTTTTCACTGACTCCAGTGGAACAACACAATTTTGCATCCGCGTGAACAACTgtgagtagaaatgatcttaaacatatgtcagacatctacaaacccactcc Alignment from GeneWise ATCTTCAAGTTGGGTATGTGTGGACAACTCTCTTATGTTCAGGAGCAACTCCCCGTTCCCTTCCAGAGTTTTCACGGACTCCAGTGGAACGACACAGTTTTGTGTCCGTGTGAACAACT cctcataaatcgctacctttctctcttcgtactttctcctctgtttacagGTCATCAAGTTGGGTATGTGTTGGCAACTCTCTAATGTTTCGAAGTAACTCCCCATTCCCATCCAGAGTTTTCACTGACTCCAGTGGAACAACACAATTTTGCATCCGCGTGAACAACTgtgagtagaaatgatcttaaacatatgtcagacatctacaaacccactcc #### Tdrd1_ID12208_9 --> 0 - 1 Original Alignment GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAg caggttcttgaatggtctttcatgtaggtttttaactgcttttttcttagGCCTTAAAGTGCTGTGTATCAGGTGTCATTACCTCTGCAGGTAAGTGGAGTGAAGGCTGTGTTACAGCTGTGAAGGCCCTTCTTTTTGAGCAATTCTGCTCTGTCAAAGTCATGGTCATCATAGAGGAGGAGGTCCTTACATGTGCTGTTGATCTTGTCTTACAGAGTTCAggtaagtgaatgaaatgcctctaatccctgtttagctatctaggaccctaa Alignment from CESAR GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAg caggttcttgaatggtctttcatgtaggtttttaactgcttttttcttagGCCTTAAAGTGCTGTGTATCAGGTGTCATTACCTCTGCAGGTAAGTGGAGTGAAGGCTGTGTTACAGCTGTGAAGGCCCTTCTTTTTGAGCAATTCTGCTCTGTCAAAGTCATGGTCATCATAGAGGAGGAGGTCCTTACATGTGCTGTTGATCTTGTCTTACAGAGTTCAggtaagtgaatgaaatgcctctaatccctgtttagctatctaggaccctaa Alignment from Spaln_aa2Genome GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAG caggttcttgaatggtctttcatgtaggtttttaactgcttttttcttagGCCTTAAAGTGCTGTGTATCAGGTGTCATTACCTCTGCAGGTAAGTGGAGTGAAGGCTGTGTTACAGCTGTGAAGGCCCTTCTTTTTGAGCAATTCTGCTCTGTCAAAGTCATGGTCATCATAGAGGAGGAGGTCCTTACATGTGCTGTTGATCTTGTCTTACAGAGTTCAGgtaagtgaatgaaatgcctctaatccctgtttagctatctaggaccctaa Alignment from Spaln_nt2Genome GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAG caggttcttgaatggtctttcatgtaggtttttaactgcttttttcttagGCCTTAAAGTGCTGTGTATCAGGTGTCATTACCTCTGCAGGTAAGTGGAGTGAAGGCTGTGTTACAGCTGTGAAGGCCCTTCTTTTTGAGCAATTCTGCTCTGTCAAAGTCATGGTCATCATAGAGGAGGAGGTCCTTACATGTGCTGTTGATCTTGTCTTACAGAGTTCAGgtaagtgaatgaaatgcctctaatccctgtttagctatctaggaccctaa Alignment from Pairagon GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAG caggttcttgaatggtctttcatgtaggtttttaactgcttttttcttagGCCTTAAAGTGCTGTGTATCAGGTGTCATTACCTCTGCAGGTAAGTGGAGTGAAGGCTGTGTTACAGCTGTGAAGGCCCTTCTTTTTGAGCAATTCTGCTCTGTCAAAGTCATGGTCATCATAGAGGAGGAGGTCCTTACATGTGCTGTTGATCTTGTCTTACAGAGTTCAGgtaagtgaatgaaatgcctctaatccctgtttagctatctaggaccctaa Alignment from Exonerate_protein2genome GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAG caggttcttgaatggtctttcatgtaggtttttaactgcttttttcttagGCCTTAAAGTGCTGTGTATCAGGTGTCATTACCTCTGCAGGTAAGTGGAGTGAAGGCTGTGTTACAGCTGTGAAGGCCCTTCTTTTTGAGCAATTCTGCTCTGTCAAAGTCATGGTCATCATAGAGGAGGAGGTCCTTACATGTGCTGTTGATCTTGTCTTACAGAGTTCAGgtaagtgaatgaaatgcctctaatccctgtttagctatctaggaccctaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAG caggttcttgaatggtctttcatgtaggtttttaactgcttttttcttagGCCTTAAAGTGCTGTGTATCAGGTGTCATTACCTCTGCAGGTAAGTGGAGTGAAGGCTGTGTTACAGCTGTGAAGGCCCTTCTTTTTGAGCAATTCTGCTCTGTCAAAGTCATGGTCATCATAGAGGAGGAGGTCCTTACATGTGCTGTTGATCTTGTCTTACAGAGTTCAGgtaagtgaatgaaatgcctctaatccctgtttagctatctaggaccctaa #### Tdrd1_ID12209_10 --> 2 - 1 Original Alignment gaAAGCAGCTGGACCATGTGCTGGTGGAAATGGGGTATGGAGTGAAACCCGGTGAGCAGAGCTCCACGGAGCAGAGTGTGGACCACa ctgtggtgctcctactaatttatcagtttatctttacctttcattcccaggaAAGCAGATTGACCATGTGCTAGTGGAAATGGGATATGGAGTGAAACCCGGGGACCAGAGTTCCACAGAACAGAGTGTGGACCATagtaaggttacaggttcccattgaaaaaggcttacaacgattcctgtgaat Alignment from CESAR gaAAGCAGCTGGACCATGTGCTGGTGGAAATGGGGTATGGAGTGAAACCCGGTGAGCAGAGCTCCACGGAGCAGAGTGTGGACCACa ctgtggtgctcctactaatttatcagtttatctttacctttcattcccaggaAAGCAGATTGACCATGTGCTAGTGGAAATGGGATATGGAGTGAAACCCGGGGACCAGAGTTCCACAGAACAGAGTGTGGACCATagtaaggttacaggttcccattgaaaaaggcttacaacgattcctgtgaat Alignment from Spaln_aa2Genome GAAAGCAGCTGGACCATGTGCTGGTGGAAATGGGGTATGGAGTGAAACCCGGTGAGCAGAGCTCCACGGAGCAGAGTGTGGACCACA ctgtggtgctcctactaatttatcagtttatctttacctttcattcccagGAAAGCAGATTGACCATGTGCTAGTGGAAATGGGATATGGAGTGAAACCCGGGGACCAGAGTTCCACAGAACAGAGTGTGGACCATAgtaaggttacaggttcccattgaaaaaggcttacaacgattcctgtgaat Alignment from Spaln_nt2Genome GAAAGCAGCTGGACCATGTGCTGGTGGAAATGGGGTATGGAGTGAAACCCGGTGAGCAGAGCTCCACGGAGCAGAGTGTGGACCACA ctgtggtgctcctactaatttatcagtttatctttacctttcattcccagGAAAGCAGATTGACCATGTGCTAGTGGAAATGGGATATGGAGTGAAACCCGGGGACCAGAGTTCCACAGAACAGAGTGTGGACCATAgtaaggttacaggttcccattgaaaaaggcttacaacgattcctgtgaat Alignment from Pairagon GAAAGCAGCTGGACCATGTGCTGGTGGAAATGGGGTATGGAGTGAAACCCGGTGAGCAGAGCTCCACGGAGCAGAGTGTGGACCACA ctgtggtgctcctactaatttatcagtttatctttacctttcattcccagGAAAGCAGATTGACCATGTGCTAGTGGAAATGGGATATGGAGTGAAACCCGGGGACCAGAGTTCCACAGAACAGAGTGTGGACCATAgtaaggttacaggttcccattgaaaaaggcttacaacgattcctgtgaat Alignment from Exonerate_protein2genome GAAAGCAGCTGGACCATGTGCTGGTGGAAATGGGGTATGGAGTGAAACCCGGTGAGCAGAGCTCCACGGAGCAGAGTGTGGACCACA ctgtggtgctcctactaatttatcagtttatctttacctttcattcccagGAAAGCAGATTGACCATGTGCTAGTGGAAATGGGATATGGAGTGAAACCCGGGGACCAGAGTTCCACAGAACAGAGTGTGGACCATAgtaaggttacaggttcccattgaaaaaggcttacaacgattcctgtgaat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAAAGCAGCTGGACCATGTGCTGGTGGAAATGGGGTATGGAGTGAAACCCGGTGAGCAGAGCTCCACGGAGCAGAGTGTGGACCACA ctgtggtgctcctactaatttatcagtttatctttacctttcattcccagGAAAGCAGATTGACCATGTGCTAGTGGAAATGGGATATGGAGTGAAACCCGGGGACCAGAGTTCCACAGAACAGAGTGTGGACCATAgtaaggttacaggttcccattgaaaaaggcttacaacgattcctgtgaat #### Tdrd1_ID12213_14 --> 2 - 1 Original Alignment gcGTGAAGCCATCATTAGGAATTTGGACTCCAGAAGCTGTGTGTGTCATGAAAGAGATGGTACAGAACAGGATGGTCACAGTGAGAGTGGTGGGCATGCTGGGGACCAGGGCCCTGGTGGAGCTCATCGACAAGTCGGTGGCTCCTCACGTCAGCGCTTCTAAAGCTCTCATAGACTCGGGCTTTGCCATCAAAGAAAAGGACGTGGCAGATAAAGGCAGCAGTATGCACACAGCCAGTg gaaccagggtatggaatagttttagatcccctccgtccgtgtccccccaggtGTAGAGCCATTGCTAGGATTTTGGACTTCTGAGGGTGTGTGTGTTATGAAAGAGATGGTACAAAACAGGATGGTTGCAGTGAGAGTG------GTTCTGGGCACCAGGGCTTTAGTGAGGCTTGTTGACAAGACTGTGGCCCCCCATGTGAGTGCCTCTAAAGCCCTCATTGACTCAGGCTTCACAATTAATGAGAAGGATCTTGCCGACAAG---GGCAGCGCACACACATCCAGTggtgagcgtaatgtagtgccaaagcaaagattcaagtattaggagagttct Alignment from CESAR gcGTGAAGCCATCATTAGGAATTTGGACTCCAGAAGCTGTGTGTGTCATGAAAGAGATGGTACAGAACAGGATGGTCACAGTGAGAGTGGTGGGCATGCTGGGGACCAGGGCCCTGGTGGAGCTCATCGACAAGTCGGTGGCTCCTCACGTCAGCGCTTCTAAAGCTCTCATAGACTCGGGCTTTGCCATCAAAGAAAAGGACGTGGCAGATAAAGGCAGCAGTATGCACACAGCCAGTg gaaccagggtatggaatagttttagatcccctccgtccgtgtccccccaggtGTAGAGCCATTGCTAGGATTTTGGACTTCTGAGGGTGTGTGTGTTATGAAAGAGATGGTACAAAACAGGATGGTTGCAGTGAGAGTGGTT------CTGGGCACCAGGGCTTTAGTGAGGCTTGTTGACAAGACTGTGGCCCCCCATGTGAGTGCCTCTAAAGCCCTCATTGACTCAGGCTTCACAATTAATGAGAAGGATCTTGCCGACAAGGGCAGCGCA---CACACATCCAGTggtgagcgtaatgtagtgccaaagcaaagattcaagtattaggagagttct Alignment from Spaln_aa2Genome GCGTGAAGCCATCATTAGGAATTTGGACTCCAGAAGCTGTGTGTGTCATGAAAGAGATGGTACAGAACAGGATGGTCACAGTGAGAGTGGTGGGCATGCTGGGGACCAGGGCCCTGGTGGAGCTCATCGACAAGTCGGTGGCTCCTCACGTCAGCGCTTCTAAAGCTCTCATAGACTCGGGCTTTGCCATCAAAGAAAAGGACGTGGCAGATAAAGGCAGCAGTATGCACACAGCCAGTGTTCCCT gaaccagggtatggaatagttttagatcccctccgtccgtgtccccccagGTGTAGAGCCATTGCTAGGATTTTGGACTTCTGAGGGTGTGTGTGTTATGAAAGAGATGGTACAAAACAGGATGGTTGCAGTGAGAGTGGTT------CTGGGCACCAGGGCTTTAGTGAGGCTTGTTGACAAGACTGTGGCCCCCCATGTGAGTGCCTCTAAAGCCCTCATTGACTCAGGCTTCACAATTAATGAGAAGGATCTTGCCGACAAGGGCAGCGCA---CACACATCCAGTGGTGAGCgtaatgtagtgccaaagcaaagattcaagtattaggagagttct Alignment from Spaln_nt2Genome GCGTGAAGCCATCATTAGGAATTTGGACTCCAGAAGCTGTGTGTGTCATGAAAGAGATGGTACAGAACAGGATGGTCACAGTGAGAGTGGTGGGCATGCTGGGGACCAGGGCCCTGGTGGAGCTCATCGACAAGTCGGTGGCTCCTCACGTCAGCGCTTCTAAAGCTCTCATAGACTCGGGCTTTGCCATCAAAGAAAAGGACGTGGCAGATAAAGGCAGCAGTATGCACACAGCCAGTG gaaccagggtatggaatagttttagatcccctccgtccgtgtccccccagGTGTAGAGCCATTGCTAGGATTTTGGACTTCTGAGGGTGTGTGTGTTATGAAAGAGATGGTACAAAACAGGATGGTTGCAGTGAGAGTGG------TTCTGGGCACCAGGGCTTTAGTGAGGCTTGTTGACAAGACTGTGGCCCCCCATGTGAGTGCCTCTAAAGCCCTCATTGACTCAGGCTTCACAATTAATGAGAAGGATCTTGCCGACAAGGGCAGC-GCA--CACACATCCAGTGgtgagcgtaatgtagtgccaaagcaaagattcaagtattaggagagttct Alignment from Pairagon GCGTGAAGCCATCATTAGGAATTTGGACTCCAGAAGCTGTGTGTGTCATGAAAGAGATGGTACAGAACAGGATGGTCACAGTGAGAGTGGTGGGCATGCTGGGGACCAGGGCCCTGGTGGAGCTCATCGACAAGTCGGTGGCTCCTCACGTCAGCGCTTCTAAAGCTCTCATAGACTCGGGCTTTGCCATCAAAGAAAAGGACGTGGCAGATAAAGGCAGCAGTATGCACACAGCCAGTG gaaccagggtatggaatagttttagatcccctccgtccgtgtccccccagGTGTAGAGCCATTGCTAGGATTTTGGACTTCTGAGGGTGTGTGTGTTATGAAAGAGATGGTACAAAACAGGATGGTTGCAGTGAGAGTGG------TTCTGGGCACCAGGGCTTTAGTGAGGCTTGTTGACAAGACTGTGGCCCCCCATGTGAGTGCCTCTAAAGCCCTCATTGACTCAGGCTTCACAATTAATGAGAAGGATCTTGCCGACAAGGGCAGC---GCACACACATCCAGTGgtgagcgtaatgtagtgccaaagcaaagattcaagtattaggagagttct Alignment from Exonerate_protein2genome GCGTGAAGCCATCATTAGGAATTTGGACTCCAGAAGCTGTGTGTGTCATGAAAGAGATGGTACAGAACAGGATGGTCACAGTGAGAGTGGTGGGCATGCTGGGGACCAGGGCCCTGGTGGAGCTCATCGACAAGTCGGTGGCTCCTCACGTCAGCGCTTCTAAAGCTCTCATAGACTCGGGCTTTGCCATCAAAGAAAAGGACGTGGCAGATAAAGGCAGCAGTATGCACACAGCCAGTGTTCCCT gaaccagggtatggaatagttttagatcccctccgtccgtgtccccccagGTGTAGAGCCATTGCTAGGATTTTGGACTTCTGAGGGTGTGTGTGTTATGAAAGAGATGGTACAAAACAGGATGGTTGCAGTGAGAGTGGTT------CTGGGCACCAGGGCTTTAGTGAGGCTTGTTGACAAGACTGTGGCCCCCCATGTGAGTGCCTCTAAAGCCCTCATTGACTCAGGCTTCACAATTAATGAGAAGGATCTTGCCGACAAGGGCAGCGCA---CACACATCCAGTGGTGAGCgtaatgtagtgccaaagcaaagattcaagtattaggagagttct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCGTGAAGCCATCATTAGGAATTTGGACTCCAGAAGCTGTGTGTGTCATGAAAGAGATGGTACAGAACAGGATGGTCACAGTGAGAGTGGTGGGCATGCTGGGGACCAGGGCCCTGGTGGAGCTCATCGACAAGTCGGTGGCTCCTCACGTCAGCGCTTCTAAAGCTCTCATAGACTCGGGCTTTGCCATCAAAGAAAAGGACGTGGCAGATAAAGGCAGCAGTATGCACACAGCCAGTG gaaccagggtatggaatagttttagatcccctccgtccgtgtccccccagGTGTAGAGCCATTGCTAGGATTTTGGACTTCTGAGGGTGTGTGTGTTATGAAAGAGATGGTACAAAACAGGATGGTTGCAGTGAGAGTGGTT------CTGGGCACCAGGGCTTTAGTGAGGCTTGTTGACAAGACTGTGGCCCCCCATGTGAGTGCCTCTAAAGCCCTCATTGACTCAGGCTTCACAATTAATGAGAAGGATCTTGCCGACAAGGGCAGCGCA---CACACATCCAGTGgtgagcgtaatgtagtgccaaagcaaagattcaagtattaggagagttct #### Tdrd1_ID12219_20 --> 2 - 1 Original Alignment aaAATCAAGAGAAGCTGTGTGTGTTAGCAGCTGAATTGTTAGAACACTGTAATGCTCAGAAGGGCCAGCCAGCCTACAGACCACGGACCGGCGACGCGTGCTGTGCTAAGTACACAa agtctcatgcatttttttgatcagcctgattcctctggatttcttcacagaaAACCAAGAGAGGCTGTGTGTACTAGTGGCTGAGCTATTAGAACACTGTAATGCC---AAGGGGCGGCCAGCATACAGGCCACGAACTGGTGAAGCATGTTGTGCAAAATACATAagtaagctcacttgtgaacatggcattgcaacaccctggtcttttctcaaa Alignment from CESAR aaAATCAAGAGAAGCTGTGTGTGTTAGCAGCTGAATTGTTAGAACACTGTAATGCTCAGAAGGGCCAGCCAGCCTACAGACCACGGACCGGCGACGCGTGCTGTGCTAAGTACACAa agtctcatgcatttttttgatcagcctgattcctctggatttcttcacagaaAACCAAGAGAGGCTGTGTGTACTAGTGGCTGAGCTATTAGAACACTGTAATGCC---AAGGGGCGGCCAGCATACAGGCCACGAACTGGTGAAGCATGTTGTGCAAAATACATAagtaagctcacttgtgaacatggcattgcaacaccctggtcttttctcaaa Alignment from Spaln_aa2Genome AAAATCAAGAGAAGCTGTGTGTGTTAGCAGCTGAATTGTTAGAACACTGTAATGCTCAGAAGGGCCAGCCAGCCTACAGACCACGGACCGGCGACGCGTGCTGTGCTAAGTACACAA agtctcatgcatttttttgatcagcctgattcctctggatttcttcacagAAAACCAAGAGAGGCTGTGTGTACTAGTGGCTGAGCTATTAGAACACTGTAATGCC---AAGGGGCGGCCAGCATACAGGCCACGAACTGGTGAAGCATGTTGTGCAAAATACATAAgtaagctcacttgtgaacatggcattgcaacaccctggtcttttctcaaa Alignment from Spaln_nt2Genome AAAATCAAGAGAAGCTGTGTGTGTTAGCAGCTGAATTGTTAGAACACTGTAATGCTCAGAAGGGCCAGCCAGCCTACAGACCACGGACCGGCGACGCGTGCTGTGCTAAGTACACAA agtctcatgcatttttttgatcagcctgattcctctggatttcttcacagAAAACCAAGAGAGGCTGTGTGTACTAGTGGCTGAGCTATTAGAACACTGTAATGC---CAAGGGGCGGCCAGCATACAGGCCACGAACTGGTGAAGCATGTTGTGCAAAATACATAAgtaagctcacttgtgaacatggcattgcaacaccctggtcttttctcaaa Alignment from Pairagon AAAATCAAGAGAAGCTGTGTGTGTTAGCAGCTGAATTGTTAGAACACTGTAATGCTCAGAAGGGCCAGCCAGCCTACAGACCACGGACCGGCGACGCGTGCTGTGCTAAGTACACAA agtctcatgcatttttttgatcagcctgattcctctggatttcttcacagAAAACCAAGAGAGGCTGTGTGTACTAGTGGCTGAGCTATTAGAACACTGTAATGCC---AAGGGGCGGCCAGCATACAGGCCACGAACTGGTGAAGCATGTTGTGCAAAATACATAAgtaagctcacttgtgaacatggcattgcaacaccctggtcttttctcaaa Alignment from Exonerate_protein2genome AAAATCAAGAGAAGCTGTGTGTGTTAGCAGCTGAATTGTTAGAACACTGTAATGCTCAGAAGGGCCAGCCAGCCTACAGACCACGGACCGGCGACGCGTGCTGTGCTAAGTACACAA agtctcatgcatttttttgatcagcctgattcctctggatttcttcacagAAAACCAAGAGAGGCTGTGTGTACTAGTGGCTGAGCTATTAGAACACTGTAATGCC---AAGGGGCGGCCAGCATACAGGCCACGAACTGGTGAAGCATGTTGTGCAAAATACATAAgtaagctcacttgtgaacatggcattgcaacaccctggtcttttctcaaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AAAATCAAGAGAAGCTGTGTGTGTTAGCAGCTGAATTGTTAGAACACTGTAATGCTCAGAAGGGCCAGCCAGCCTACAGACCACGGACCGGCGACGCGTGCTGTGCTAAGTACACAA agtctcatgcatttttttgatcagcctgattcctctggatttcttcacagAAAACCAAGAGAGGCTGTGTGTACTAGTGGCTGAGCTATTAGAACACTGTAATGCC---AAGGGGCGGCCAGCATACAGGCCACGAACTGGTGAAGCATGTTGTGCAAAATACATAAgtaagctcacttgtgaacatggcattgcaacaccctggtcttttctcaaa #### Tectb_ID11562_5 --> 0 - 2 Original Alignment AATGCCAAGTTTTCCACCAAAAAAGAAGCTCCCTTCGTTCTGGAAACGTCCGAAATCGGCTCAGATCTGTTTGCGGGAGTAGAAGCCAAAGGCCTAAGCGTTcg tgtgtggaatgttacaaaaatgtcttgtcccagcttggtgtctgttgcagAATGCCAAATTCTCCACTAAGAAAGAAGCTCCCTTTGTACTGGAGACAGCCGAAATTGGCTCAGATTTATTTGCAGGGGTAGAGGCTAAGGGCCTTAGCAGCcggtaagtactgtataagtatctttaggaatatgttatatatcaccattgta Alignment from CESAR AATGCCAAGTTTTCCACCAAAAAAGAAGCTCCCTTCGTTCTGGAAACGTCCGAAATCGGCTCAGATCTGTTTGCGGGAGTAGAAGCCAAAGGCCTAAGCGTTcg tgtgtggaatgttacaaaaatgtcttgtcccagcttggtgtctgttgcagAATGCCAAATTCTCCACTAAGAAAGAAGCTCCCTTTGTACTGGAGACAGCCGAAATTGGCTCAGATTTATTTGCAGGGGTAGAGGCTAAGGGCCTTAGCAGCcggtaagtactgtataagtatctttaggaatatgttatatatcaccattgta Alignment from Spaln_aa2Genome AATGCCAAGTTTTCCACCAAAAAAGAAGCTCCCTTCGTTCTGGAAACGTCCGAAATCGGCTCAGATCTGTTTGCGGGAGTAGAAGCCAAAGGCCTAAGCGTTCG tgtgtggaatgttacaaaaatgtcttgtcccagcttggtgtctgttgcagAATGCCAAATTCTCCACTAAGAAAGAAGCTCCCTTTGTACTGGAGACAGCCGAAATTGGCTCAGATTTATTTGCAGGGGTAGAGGCTAAGGGCCTTAGCAGCCGgtaagtactgtataagtatctttaggaatatgttatatatcaccattgta Alignment from Spaln_nt2Genome AATGCCAAGTTTTCCACCAAAAAAGAAGCTCCCTTCGTTCTGGAAACGTCCGAAATCGGCTCAGATCTGTTTGCGGGAGTAGAAGCCAAAGGCCTAAGCGTTCG tgtgtggaatgttacaaaaatgtcttgtcccagcttggtgtctgttgcagAATGCCAAATTCTCCACTAAGAAAGAAGCTCCCTTTGTACTGGAGACAGCCGAAATTGGCTCAGATTTATTTGCAGGGGTAGAGGCTAAGGGCCTTAGCAGCCGgtaagtactgtataagtatctttaggaatatgttatatatcaccattgta Alignment from Pairagon AATGCCAAGTTTTCCACCAAAAAAGAAGCTCCCTTCGTTCTGGAAACGTCCGAAATCGGCTCAGATCTGTTTGCGGGAGTAGAAGCCAAAGGCCTAAGCGTTCG tgtgtggaatgttacaaaaatgtcttgtcccagcttggtgtctgttgcagAATGCCAAATTCTCCACTAAGAAAGAAGCTCCCTTTGTACTGGAGACAGCCGAAATTGGCTCAGATTTATTTGCAGGGGTAGAGGCTAAGGGCCTTAGCAGCCGgtaagtactgtataagtatctttaggaatatgttatatatcaccattgta Alignment from Exonerate_protein2genome AATGCCAAGTTTTCCACCAAAAAAGAAGCTCCCTTCGTTCTGGAAACGTCCGAAATCGGCTCAGATCTGTTTGCGGGAGTAGAAGCCAAAGGCCTAAGCGTTCG tgtgtggaatgttacaaaaatgtcttgtcccagcttggtgtctgttgcagAATGCCAAATTCTCCACTAAGAAAGAAGCTCCCTTTGTACTGGAGACAGCCGAAATTGGCTCAGATTTATTTGCAGGGGTAGAGGCTAAGGGCCTTAGCAGCCGgtaagtactgtataagtatctttaggaatatgttatatatcaccattgta Alignment from Exonerate_coding2genome AATGCCAAGTTTTCCACCAAAAAAGAAGCTCCCTTCGTTCTGGAAACGTCCGAAATCGGCTCAGATCTGTTTGCGGGAGTAGAAGCCAAAGGCCTAAGCGTTCG tgtgtggaatgttacaaaaatgtcttgtcccagcttggtgtctgttgcagAATGCCAAATTCTCCACTAAGAAAGAAGCTCCCTTTGTACTGGAGACAGCCGAAATTGGCTCAGATTTATTTGCAGGGGTAGAGGCTAAGGGCCTTAGCAGCCGgtaagtactgtataagtatctttaggaatatgttatatatcaccattgta Alignment from GeneWise AATGCCAAGTTTTCCACCAAAAAAGAAGCTCCCTTCGTTCTGGAAACGTCCGAAATCGGCTCAGATCTGTTTGCGGGAGTAGAAGCCAAAGGCCTAAGCGTTCG tgtgtggaatgttacaaaaatgtcttgtcccagcttggtgtctgttgcagAATGCCAAATTCTCCACTAAGAAAGAAGCTCCCTTTGTACTGGAGACAGCCGAAATTGGCTCAGATTTATTTGCAGGGGTAGAGGCTAAGGGCCTTAGCAGCCGgtaagtactgtataagtatctttaggaatatgttatatatcaccattgta #### Tjp2_ID5269_18 --> 2 - 0 Original Alignment ccACAATCAACGTGAATTCAGCCAACGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAACGAAGCAGTCTGGGTCTCTGAAGGAAAG cctcgattattgatcttgttgggccccttcatttttaaaaattcttttagcaACTATCAATGTGAATTCAGCTAATGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAATGAAGCAGTCTGGGTCTCTGAAGGGAAGgtgagaggcacaaatcctcaatactcccattgagtgaaaacttgacataa Alignment from CESAR ccACAATCAACGTGAATTCAGCCAACGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAACGAAGCAGTCTGGGTCTCTGAAGGAAAG cctcgattattgatcttgttgggccccttcatttttaaaaattcttttagcaACTATCAATGTGAATTCAGCTAATGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAATGAAGCAGTCTGGGTCTCTGAAGGGAAGgtgagaggcacaaatcctcaatactcccattgagtgaaaacttgacataa Alignment from Spaln_aa2Genome CCACAATCAACGTGAATTCAGCCAACGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAACGAAGCAGTCTGGGTCTCTGAAGGAAAG cctcgattattgatcttgttgggccccttcatttttaaaaattcttttagCAACTATCAATGTGAATTCAGCTAATGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAATGAAGCAGTCTGGGTCTCTGAAGGGAAGgtgagaggcacaaatcctcaatactcccattgagtgaaaacttgacataa Alignment from Spaln_nt2Genome CCACAATCAACGTGAATTCAGCCAACGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAACGAAGCAGTCTGGGTCTCTGAAGGAAAG cctcgattattgatcttgttgggccccttcatttttaaaaattcttttagCAACTATCAATGTGAATTCAGCTAATGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAATGAAGCAGTCTGGGTCTCTGAAGGGAAGgtgagaggcacaaatcctcaatactcccattgagtgaaaacttgacataa Alignment from Pairagon CCACAATCAACGTGAATTCAGCCAACGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAACGAAGCAGTCTGGGTCTCTGAAGGAAAG cctcgattattgatcttgttgggccccttcatttttaaaaattcttttagCAACTATCAATGTGAATTCAGCTAATGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAATGAAGCAGTCTGGGTCTCTGAAGGGAAGgtgagaggcacaaatcctcaatactcccattgagtgaaaacttgacataa Alignment from Exonerate_protein2genome CCACAATCAACGTGAATTCAGCCAACGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAACGAAGCAGTCTGGGTCTCTGAAGGAAAG cctcgattattgatcttgttgggccccttcatttttaaaaattcttttagCAACTATCAATGTGAATTCAGCTAATGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAATGAAGCAGTCTGGGTCTCTGAAGGGAAGgtgagaggcacaaatcctcaatactcccattgagtgaaaacttgacataa Alignment from Exonerate_coding2genome CCACAATCAACGTGAATTCAGCCAACGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAACGAAGCAGTCTGGGTCTCTGAAGGAAAG cctcgattattgatcttgttgggccccttcatttttaaaaattcttttagCAACTATCAATGTGAATTCAGCTAATGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAATGAAGCAGTCTGGGTCTCTGAAGGGAAGgtgagaggcacaaatcctcaatactcccattgagtgaaaacttgacataa Alignment from GeneWise CCACAATCAACGTGAATTCAGCCAACGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAACGAAGCAGTCTGGGTCTCTGAAGGAAAG cctcgattattgatcttgttgggccccttcatttttaaaaattcttttagCAACTATCAATGTGAATTCAGCTAATGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAATGAAGCAGTCTGGGTCTCTGAAGGGAAGgtgagaggcacaaatcctcaatactcccattgagtgaaaacttgacataa #### Tjp2_ID5270_17 --> 0 - 1 Original Alignment GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAg cagcccctctgattttgtgacattaatgccaactcttttctttctttcagGACAAGCATGCCCTGCTTGGTGTTACCCCCAAAGCAGCAGACCTGCTCAACTACACTCAGTGGTTTCCTATTGTCATTTTTTTCAATCCAGACACCAGACATGGGGTTAAAACAATAAGACAACGCCTGAGCCCAACATCGAACAAGAGCTCTCGAAAATTGTTCGATCAGGCTAACAAGCTTAAGAAGACCTGTTCTCATCTTTTTACAggtaagtgtacccttgaaaaagctctctgcccaccctgaactatgagaaat Alignment from CESAR GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAg cagcccctctgattttgtgacattaatgccaactcttttctttctttcagGACAAGCATGCCCTGCTTGGTGTTACCCCCAAAGCAGCAGACCTGCTCAACTACACTCAGTGGTTTCCTATTGTCATTTTTTTCAATCCAGACACCAGACATGGGGTTAAAACAATAAGACAACGCCTGAGCCCAACATCGAACAAGAGCTCTCGAAAATTGTTCGATCAGGCTAACAAGCTTAAGAAGACCTGTTCTCATCTTTTTACAggtaagtgtacccttgaaaaagctctctgcccaccctgaactatgagaaat Alignment from Spaln_aa2Genome GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG cagcccctctgattttgtgacattaatgccaactcttttctttctttcagGACAAGCATGCCCTGCTTGGTGTTACCCCCAAAGCAGCAGACCTGCTCAACTACACTCAGTGGTTTCCTATTGTCATTTTTTTCAATCCAGACACCAGACATGGGGTTAAAACAATAAGACAACGCCTGAGCCCAACATCGAACAAGAGCTCTCGAAAATTGTTCGATCAGGCTAACAAGCTTAAGAAGACCTGTTCTCATCTTTTTACAGgtaagtgtacccttgaaaaagctctctgcccaccctgaactatgagaaat Alignment from Spaln_nt2Genome GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG cagcccctctgattttgtgacattaatgccaactcttttctttctttcagGACAAGCATGCCCTGCTTGGTGTTACCCCCAAAGCAGCAGACCTGCTCAACTACACTCAGTGGTTTCCTATTGTCATTTTTTTCAATCCAGACACCAGACATGGGGTTAAAACAATAAGACAACGCCTGAGCCCAACATCGAACAAGAGCTCTCGAAAATTGTTCGATCAGGCTAACAAGCTTAAGAAGACCTGTTCTCATCTTTTTACAGgtaagtgtacccttgaaaaagctctctgcccaccctgaactatgagaaat Alignment from Pairagon GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG cagcccctctgattttgtgacattaatgccaactcttttctttctttcagGACAAGCATGCCCTGCTTGGTGTTACCCCCAAAGCAGCAGACCTGCTCAACTACACTCAGTGGTTTCCTATTGTCATTTTTTTCAATCCAGACACCAGACATGGGGTTAAAACAATAAGACAACGCCTGAGCCCAACATCGAACAAGAGCTCTCGAAAATTGTTCGATCAGGCTAACAAGCTTAAGAAGACCTGTTCTCATCTTTTTACAGgtaagtgtacccttgaaaaagctctctgcccaccctgaactatgagaaat Alignment from Exonerate_protein2genome GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG cagcccctctgattttgtgacattaatgccaactcttttctttctttcagGACAAGCATGCCCTGCTTGGTGTTACCCCCAAAGCAGCAGACCTGCTCAACTACACTCAGTGGTTTCCTATTGTCATTTTTTTCAATCCAGACACCAGACATGGGGTTAAAACAATAAGACAACGCCTGAGCCCAACATCGAACAAGAGCTCTCGAAAATTGTTCGATCAGGCTAACAAGCTTAAGAAGACCTGTTCTCATCTTTTTACAGgtaagtgtacccttgaaaaagctctctgcccaccctgaactatgagaaat Alignment from Exonerate_coding2genome GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG cagcccctctgattttgtgacattaatgccaactcttttctttctttcagGACAAGCATGCCCTGCTTGGTGTTACCCCCAAAGCAGCAGACCTGCTCAACTACACTCAGTGGTTTCCTATTGTCATTTTTTTCAATCCAGACACCAGACATGGGGTTAAAACAATAAGACAACGCCTGAGCCCAACATCGAACAAGAGCTCTCGAAAATTGTTCGATCAGGCTAACAAGCTTAAGAAGACCTGTTCTCATCTTTTTACAGgtaagtgtacccttgaaaaagctctctgcccaccctgaactatgagaaat Alignment from GeneWise GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG cagcccctctgattttgtgacattaatgccaactcttttctttctttcagGACAAGCATGCCCTGCTTGGTGTTACCCCCAAAGCAGCAGACCTGCTCAACTACACTCAGTGGTTTCCTATTGTCATTTTTTTCAATCCAGACACCAGACATGGGGTTAAAACAATAAGACAACGCCTGAGCCCAACATCGAACAAGAGCTCTCGAAAATTGTTCGATCAGGCTAACAAGCTTAAGAAGACCTGTTCTCATCTTTTTACAGgtaagtgtacccttgaaaaagctctctgcccaccctgaactatgagaaat #### Tjp2_ID5278_9 --> 1 - 1 Original Alignment cTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAg ttgttattcaataaagcattggccatattggtgggctctggaaccttcagcTCTAAAGAAGAGACATCAGGCAAACTGTCAAGAATGGGTGCCATGCCCACATCATTCAAATACACAGGTGACCTCACAGCTGCAGGAGTTATG---GCCAGTAAGGAGCCA---AATCAGCAAAAAGGCCCAggtgagttgttatgctattcttttatctatctaatacatagacaggttaga Alignment from CESAR cTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAg ttgttattcaataaagcattggccatattggtgggctctggaaccttcagcTCTAAAGAAGAGACATCAGGCAAACTGTCAAGAATGGGTGCCATGCCCACATCATTCAAATACACAGGTGACCTCACAGCTGCAGGAGTTATG---GCCAGTAAGGAGCCAAAT---CAGCAAAAAGGCCCAggtgagttgttatgctattcttttatctatctaatacatagacaggttaga Alignment from Spaln_aa2Genome CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG ttgttattcaataaagcattggccatattggtgggctctggaaccttcagCTCTAAAGAAGAGACATCAGGCAAACTGTCAAGAATGGGTGCCATGCCCACATCATTCAAATACACAGGTGACCTCACAGCTGCAGGAGTTATG---GCCAGTAAGGAGCCAAAT---CAGCAAAAAGGCCCAGgtgagttgttatgctattcttttatctatctaatacatagacaggttaga Alignment from Spaln_nt2Genome CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG ttgttattcaataaagcattggccatattggtgggctctggaaccttcagCTCTAAAGAAGAGACATCAGGCAAACTGTCAAGAATGGGTGCCATGCCCACATCATTCAAATACACAGGTGACCTCACAGCTGCAGGAGTTA---TGGCCAGTAAGGAGCCAA---ATCAGCAAAAAGGCCCAGgtgagttgttatgctattcttttatctatctaatacatagacaggttaga Alignment from Pairagon CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG ttgttattcaataaagcattggccatattggtgggctctggaaccttcagCTCTAAAGAAGAGACATCAGGCAAACTGTCAAGAATGGGTGCCATGCCCACATCATTCAAATACACAGGTGACCTCACAGCTGCAGGAGTTAT---GGCCAGTAAGGAGCCAA---ATCAGCAAAAAGGCCCAGgtgagttgttatgctattcttttatctatctaatacatagacaggttaga Alignment from Exonerate_protein2genome CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG ttgttattcaataaagcattggccatattggtgggctctggaaccttcagCTCTAAAGAAGAGACATCAGGCAAACTGTCAAGAATGGGTGCCATGCCCACATCATTCAAATACACAGGTGACCTCACAGCTGCAGGAGTTATG---GCCAGTAAGGAGCCAAAT---CAGCAAAAAGGCCCAGgtgagttgttatgctattcttttatctatctaatacatagacaggttaga Alignment from Exonerate_coding2genome CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG ttgttattcaataaagcattggccatattggtgggctctggaaccttcagCTCTAAAGAAGAGACATCAGGCAAACTGTCAAGAATGGGTGCCATGCCCACATCATTCAAATACACAGGTGACCTCACAGCTGCAGGAGTTATG---GCCAGTAAGGAGCCAAAT---CAGCAAAAAGGCCCAGgtgagttgttatgctattcttttatctatctaatacatagacaggttaga Alignment from GeneWise CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG ttgttattcaataaagcattggccatattggtgggctctggaaccttcagCTCTAAAGAAGAGACATCAGGCAAACTGTCAAGAATGGGTGCCATGCCCACATCATTCAAATACACAGGTGACCTCACAGCTGCAGGAGTTATG---GCCAGTAAGGAGCCAAAT---CAGCAAAAAGGCCCAGgtgagttgttatgctattcttttatctatctaatacatagacaggttaga #### Tjp2_ID5279_8 --> 2 - 2 Original Alignment atATCTCGGAAATAGAGTCCAACCGGTCTTTCTCTCCAGAGGAGAGACGCCAGCAGTATTCTGATCAGGATTACCATTCCTCCACTGAGAAGCTGAAGGAGAGGCCGag cttgttctctatgtctcaccaaacaagatcctgcactctctcccctccagatATTTCAGAAATAGAGTCCAATCGGTCTTTTTCTCCAGAAGAGAGGCGCCAGCAGTACTCTGGACAAGACTACCACCCTTCTACTGAGGAGCTGAAGAAGAGGCCAaggtgagtttcagctttgatgatcaaaattttgttattcaataaagcattgg Alignment from CESAR atATCTCGGAAATAGAGTCCAACCGGTCTTTCTCTCCAGAGGAGAGACGCCAGCAGTATTCTGATCAGGATTACCATTCCTCCACTGAGAAGCTGAAGGAGAGGCCGag cttgttctctatgtctcaccaaacaagatcctgcactctctcccctccagatATTTCAGAAATAGAGTCCAATCGGTCTTTTTCTCCAGAAGAGAGGCGCCAGCAGTACTCTGGACAAGACTACCACCCTTCTACTGAGGAGCTGAAGAAGAGGCCAaggtgagtttcagctttgatgatcaaaattttgttattcaataaagcattgg Alignment from Spaln_aa2Genome ATATCTCGGAAATAGAGTCCAACCGGTCTTTCTCTCCAGAGGAGAGACGCCAGCAGTATTCTGATCAGGATTACCATTCCTCCACTGAGAAGCTGAAGGAGAGGCCGAG cttgttctctatgtctcaccaaacaagatcctgcactctctcccctccagATATTTCAGAAATAGAGTCCAATCGGTCTTTTTCTCCAGAAGAGAGGCGCCAGCAGTACTCTGGACAAGACTACCACCCTTCTACTGAGGAGCTGAAGAAGAGGCCAAGgtgagtttcagctttgatgatcaaaattttgttattcaataaagcattgg Alignment from Spaln_nt2Genome ATATCTCGGAAATAGAGTCCAACCGGTCTTTCTCTCCAGAGGAGAGACGCCAGCAGTATTCTGATCAGGATTACCATTCCTCCACTGAGAAGCTGAAGGAGAGGCCGAG cttgttctctatgtctcaccaaacaagatcctgcactctctcccctccagATATTTCAGAAATAGAGTCCAATCGGTCTTTTTCTCCAGAAGAGAGGCGCCAGCAGTACTCTGGACAAGACTACCACCCTTCTACTGAGGAGCTGAAGAAGAGGCCAAGgtgagtttcagctttgatgatcaaaattttgttattcaataaagcattgg Alignment from Pairagon ATATCTCGGAAATAGAGTCCAACCGGTCTTTCTCTCCAGAGGAGAGACGCCAGCAGTATTCTGATCAGGATTACCATTCCTCCACTGAGAAGCTGAAGGAGAGGCCGAG cttgttctctatgtctcaccaaacaagatcctgcactctctcccctccagATATTTCAGAAATAGAGTCCAATCGGTCTTTTTCTCCAGAAGAGAGGCGCCAGCAGTACTCTGGACAAGACTACCACCCTTCTACTGAGGAGCTGAAGAAGAGGCCAAGgtgagtttcagctttgatgatcaaaattttgttattcaataaagcattgg Alignment from Exonerate_protein2genome ATATCTCGGAAATAGAGTCCAACCGGTCTTTCTCTCCAGAGGAGAGACGCCAGCAGTATTCTGATCAGGATTACCATTCCTCCACTGAGAAGCTGAAGGAGAGGCCGAG cttgttctctatgtctcaccaaacaagatcctgcactctctcccctccagATATTTCAGAAATAGAGTCCAATCGGTCTTTTTCTCCAGAAGAGAGGCGCCAGCAGTACTCTGGACAAGACTACCACCCTTCTACTGAGGAGCTGAAGAAGAGGCCAAGgtgagtttcagctttgatgatcaaaattttgttattcaataaagcattgg Alignment from Exonerate_coding2genome ATATCTCGGAAATAGAGTCCAACCGGTCTTTCTCTCCAGAGGAGAGACGCCAGCAGTATTCTGATCAGGATTACCATTCCTCCACTGAGAAGCTGAAGGAGAGGCCGAG cttgttctctatgtctcaccaaacaagatcctgcactctctcccctccagATATTTCAGAAATAGAGTCCAATCGGTCTTTTTCTCCAGAAGAGAGGCGCCAGCAGTACTCTGGACAAGACTACCACCCTTCTACTGAGGAGCTGAAGAAGAGGCCAAGgtgagtttcagctttgatgatcaaaattttgttattcaataaagcattgg Alignment from GeneWise ATATCTCGGAAATAGAGTCCAACCGGTCTTTCTCTCCAGAGGAGAGACGCCAGCAGTATTCTGATCAGGATTACCATTCCTCCACTGAGAAGCTGAAGGAGAGGCCGAG cttgttctctatgtctcaccaaacaagatcctgcactctctcccctccagATATTTCAGAAATAGAGTCCAATCGGTCTTTTTCTCCAGAAGAGAGGCGCCAGCAGTACTCTGGACAAGACTACCACCCTTCTACTGAGGAGCTGAAGAAGAGGCCAAGgtgagtttcagctttgatgatcaaaattttgttattcaataaagcattgg #### Tjp2_ID5280_7 --> 0 - 1 Original Alignment ATCAACGGCACTGTTACTGAGAACATGTCTCTAACGGATGCTCGGAAGTTAATAGAAAAGTCTCGAGGAAAACTGCAGCTTGTGGTGTTGAGAGACAGCAAGCAGACCCTCATCAACATCCCAGCCCTAAACGACAGCGACTCTGAAGTGGAGg gcccaccttatagtagccctgcacatcacgccatctcccttctgtttcagATTAATGGCACTGCTACAAAGAATATGTCTCTCACTGATGCTCAGAAGTTGGTAGAAAAATCTCAAGGAAAGCTACAACTTGTGGTGTTGAGAGATACTAAGCAGACCCTCATCAACATCCCAGCCTTGAATGACAGTGACTCAGAAGTTGAGggtaaaaagtctacgtgctgggctcagcatccaaaaatccaaccaacttgt Alignment from CESAR ATCAACGGCACTGTTACTGAGAACATGTCTCTAACGGATGCTCGGAAGTTAATAGAAAAGTCTCGAGGAAAACTGCAGCTTGTGGTGTTGAGAGACAGCAAGCAGACCCTCATCAACATCCCAGCCCTAAACGACAGCGACTCTGAAGTGGAGg gcccaccttatagtagccctgcacatcacgccatctcccttctgtttcagATTAATGGCACTGCTACAAAGAATATGTCTCTCACTGATGCTCAGAAGTTGGTAGAAAAATCTCAAGGAAAGCTACAACTTGTGGTGTTGAGAGATACTAAGCAGACCCTCATCAACATCCCAGCCTTGAATGACAGTGACTCAGAAGTTGAGggtaaaaagtctacgtgctgggctcagcatccaaaaatccaaccaacttgt Alignment from Spaln_aa2Genome ATCAACGGCACTGTTACTGAGAACATGTCTCTAACGGATGCTCGGAAGTTAATAGAAAAGTCTCGAGGAAAACTGCAGCTTGTGGTGTTGAGAGACAGCAAGCAGACCCTCATCAACATCCCAGCCCTAAACGACAGCGACTCTGAAGTGGAGG gcccaccttatagtagccctgcacatcacgccatctcccttctgtttcagATTAATGGCACTGCTACAAAGAATATGTCTCTCACTGATGCTCAGAAGTTGGTAGAAAAATCTCAAGGAAAGCTACAACTTGTGGTGTTGAGAGATACTAAGCAGACCCTCATCAACATCCCAGCCTTGAATGACAGTGACTCAGAAGTTGAGGgtaaaaagtctacgtgctgggctcagcatccaaaaatccaaccaacttgt Alignment from Spaln_nt2Genome ATCAACGGCACTGTTACTGAGAACATGTCTCTAACGGATGCTCGGAAGTTAATAGAAAAGTCTCGAGGAAAACTGCAGCTTGTGGTGTTGAGAGACAGCAAGCAGACCCTCATCAACATCCCAGCCCTAAACGACAGCGACTCTGAAGTGGAGG gcccaccttatagtagccctgcacatcacgccatctcccttctgtttcagATTAATGGCACTGCTACAAAGAATATGTCTCTCACTGATGCTCAGAAGTTGGTAGAAAAATCTCAAGGAAAGCTACAACTTGTGGTGTTGAGAGATACTAAGCAGACCCTCATCAACATCCCAGCCTTGAATGACAGTGACTCAGAAGTTGAGGgtaaaaagtctacgtgctgggctcagcatccaaaaatccaaccaacttgt Alignment from Pairagon ATCAACGGCACTGTTACTGAGAACATGTCTCTAACGGATGCTCGGAAGTTAATAGAAAAGTCTCGAGGAAAACTGCAGCTTGTGGTGTTGAGAGACAGCAAGCAGACCCTCATCAACATCCCAGCCCTAAACGACAGCGACTCTGAAGTGGAGG gcccaccttatagtagccctgcacatcacgccatctcccttctgtttcagATTAATGGCACTGCTACAAAGAATATGTCTCTCACTGATGCTCAGAAGTTGGTAGAAAAATCTCAAGGAAAGCTACAACTTGTGGTGTTGAGAGATACTAAGCAGACCCTCATCAACATCCCAGCCTTGAATGACAGTGACTCAGAAGTTGAGGgtaaaaagtctacgtgctgggctcagcatccaaaaatccaaccaacttgt Alignment from Exonerate_protein2genome ATCAACGGCACTGTTACTGAGAACATGTCTCTAACGGATGCTCGGAAGTTAATAGAAAAGTCTCGAGGAAAACTGCAGCTTGTGGTGTTGAGAGACAGCAAGCAGACCCTCATCAACATCCCAGCCCTAAACGACAGCGACTCTGAAGTGGAGG gcccaccttatagtagccctgcacatcacgccatctcccttctgtttcagATTAATGGCACTGCTACAAAGAATATGTCTCTCACTGATGCTCAGAAGTTGGTAGAAAAATCTCAAGGAAAGCTACAACTTGTGGTGTTGAGAGATACTAAGCAGACCCTCATCAACATCCCAGCCTTGAATGACAGTGACTCAGAAGTTGAGGgtaaaaagtctacgtgctgggctcagcatccaaaaatccaaccaacttgt Alignment from Exonerate_coding2genome ATCAACGGCACTGTTACTGAGAACATGTCTCTAACGGATGCTCGGAAGTTAATAGAAAAGTCTCGAGGAAAACTGCAGCTTGTGGTGTTGAGAGACAGCAAGCAGACCCTCATCAACATCCCAGCCCTAAACGACAGCGACTCTGAAGTGGAGG gcccaccttatagtagccctgcacatcacgccatctcccttctgtttcagATTAATGGCACTGCTACAAAGAATATGTCTCTCACTGATGCTCAGAAGTTGGTAGAAAAATCTCAAGGAAAGCTACAACTTGTGGTGTTGAGAGATACTAAGCAGACCCTCATCAACATCCCAGCCTTGAATGACAGTGACTCAGAAGTTGAGGgtaaaaagtctacgtgctgggctcagcatccaaaaatccaaccaacttgt Alignment from GeneWise ATCAACGGCACTGTTACTGAGAACATGTCTCTAACGGATGCTCGGAAGTTAATAGAAAAGTCTCGAGGAAAACTGCAGCTTGTGGTGTTGAGAGACAGCAAGCAGACCCTCATCAACATCCCAGCCCTAAACGACAGCGACTCTGAAGTGGAGG gcccaccttatagtagccctgcacatcacgccatctcccttctgtttcagATTAATGGCACTGCTACAAAGAATATGTCTCTCACTGATGCTCAGAAGTTGGTAGAAAAATCTCAAGGAAAGCTACAACTTGTGGTGTTGAGAGATACTAAGCAGACCCTCATCAACATCCCAGCCTTGAATGACAGTGACTCAGAAGTTGAGGgtaaaaagtctacgtgctgggctcagcatccaaaaatccaaccaacttgt #### Tjp2_ID5283_4 --> 1 - 0 Original Alignment aGAAAATGACAGGGTGGTCATGGTCAATGGCACCCCCATGGAAGATGTGCTCCATTCGTTTGCCGTTCAGCAGCTTAGGAAAAGTGGGAAGATAGCAGCCATC cctcatggttcttattgccagctgagagtttgggatctatgtatctccagaGAGAATGACAGAGTGGTCATGGTGAATGGTAGTCCCATGGAAGATTTACTGCATTCATTTGCTGTTCAGCAGCTTAGTAAGAGCGGGAAGATAGCTGCCATTgtaaacctaggtctcaatacaacaattcggtgatgtgaatgtactattct Alignment from CESAR aGAAAATGACAGGGTGGTCATGGTCAATGGCACCCCCATGGAAGATGTGCTCCATTCGTTTGCCGTTCAGCAGCTTAGGAAAAGTGGGAAGATAGCAGCCATC cctcatggttcttattgccagctgagagtttgggatctatgtatctccagaGAGAATGACAGAGTGGTCATGGTGAATGGTAGTCCCATGGAAGATTTACTGCATTCATTTGCTGTTCAGCAGCTTAGTAAGAGCGGGAAGATAGCTGCCATTgtaaacctaggtctcaatacaacaattcggtgatgtgaatgtactattct Alignment from Spaln_aa2Genome AGAAAATGACAGGGTGGTCATGGTCAATGGCACCCCCATGGAAGATGTGCTCCATTCGTTTGCCGTTCAGCAGCTTAGGAAAAGTGGGAAGATAGCAGCCATC cctcatggttcttattgccagctgagagtttgggatctatgtatctccagAGAGAATGACAGAGTGGTCATGGTGAATGGTAGTCCCATGGAAGATTTACTGCATTCATTTGCTGTTCAGCAGCTTAGTAAGAGCGGGAAGATAGCTGCCATTgtaaacctaggtctcaatacaacaattcggtgatgtgaatgtactattct Alignment from Spaln_nt2Genome AGAAAATGACAGGGTGGTCATGGTCAATGGCACCCCCATGGAAGATGTGCTCCATTCGTTTGCCGTTCAGCAGCTTAGGAAAAGTGGGAAGATAGCAGCCATC cctcatggttcttattgccagctgagagtttgggatctatgtatctccagAGAGAATGACAGAGTGGTCATGGTGAATGGTAGTCCCATGGAAGATTTACTGCATTCATTTGCTGTTCAGCAGCTTAGTAAGAGCGGGAAGATAGCTGCCATTgtaaacctaggtctcaatacaacaattcggtgatgtgaatgtactattct Alignment from Pairagon AGAAAATGACAGGGTGGTCATGGTCAATGGCACCCCCATGGAAGATGTGCTCCATTCGTTTGCCGTTCAGCAGCTTAGGAAAAGTGGGAAGATAGCAGCCATC cctcatggttcttattgccagctgagagtttgggatctatgtatctccagAGAGAATGACAGAGTGGTCATGGTGAATGGTAGTCCCATGGAAGATTTACTGCATTCATTTGCTGTTCAGCAGCTTAGTAAGAGCGGGAAGATAGCTGCCATTgtaaacctaggtctcaatacaacaattcggtgatgtgaatgtactattct Alignment from Exonerate_protein2genome AGAAAATGACAGGGTGGTCATGGTCAATGGCACCCCCATGGAAGATGTGCTCCATTCGTTTGCCGTTCAGCAGCTTAGGAAAAGTGGGAAGATAGCAGCCATC cctcatggttcttattgccagctgagagtttgggatctatgtatctccagAGAGAATGACAGAGTGGTCATGGTGAATGGTAGTCCCATGGAAGATTTACTGCATTCATTTGCTGTTCAGCAGCTTAGTAAGAGCGGGAAGATAGCTGCCATTgtaaacctaggtctcaatacaacaattcggtgatgtgaatgtactattct Alignment from Exonerate_coding2genome AGAAAATGACAGGGTGGTCATGGTCAATGGCACCCCCATGGAAGATGTGCTCCATTCGTTTGCCGTTCAGCAGCTTAGGAAAAGTGGGAAGATAGCAGCCATC cctcatggttcttattgccagctgagagtttgggatctatgtatctccagAGAGAATGACAGAGTGGTCATGGTGAATGGTAGTCCCATGGAAGATTTACTGCATTCATTTGCTGTTCAGCAGCTTAGTAAGAGCGGGAAGATAGCTGCCATTgtaaacctaggtctcaatacaacaattcggtgatgtgaatgtactattct Alignment from GeneWise AGAAAATGACAGGGTGGTCATGGTCAATGGCACCCCCATGGAAGATGTGCTCCATTCGTTTGCCGTTCAGCAGCTTAGGAAAAGTGGGAAGATAGCAGCCATC cctcatggttcttattgccagctgagagtttgggatctatgtatctccagAGAGAATGACAGAGTGGTCATGGTGAATGGTAGTCCCATGGAAGATTTACTGCATTCATTTGCTGTTCAGCAGCTTAGTAAGAGCGGGAAGATAGCTGCCATTgtaaacctaggtctcaatacaacaattcggtgatgtgaatgtactattct #### Tjp2_ID5284_3 --> 0 - 2 Original Alignment GATTCCAAAAGAGGATTTGGAATTGCCGTGTCGGGAGGCAGAGACAACCCCCACTTTGAAAATGGGGAGACGTCAATCGTCATCTCAGATGTGCTCCCAGGTGGACCCGCTGATGGCTTGCTTca ctcctttagttcttatgtctcctctacacaatttcctttttcctgcatagGATTCCAGGAAAGGATTCGGGATTGCTGTTTCAGGTGGAAAAGACAACCCTCACCTTGAAAATGGGGAGGCATCAATTGTCATCTCAGATGTGCTA---------CCTGCTGATGGCTTACTCaagttagtcagcctctgtgcgtgcacctttttggttcctaccccatagcctt Alignment from CESAR GATTCCAAAAGAGGATTTGGAATTGCCGTGTCGGGAGGCAGAGACAACCCCCACTTTGAAAATGGGGAGACGTCAATCGTCATCTCAGATGTGCTCCCAGGTGGACCCGCTGATGGCTTGCTTca ctcctttagttcttatgtctcctctacacaatttcctttttcctgcatagGATTCCAGGAAAGGATTCGGGATTGCTGTTTCAGGTGGAAAAGACAACCCTCACCTTGAAAATGGGGAGGCATCAATTGTCATCTCAGATGTGCTA---------CCTGCTGATGGCTTACTCaagttagtcagcctctgtgcgtgcacctttttggttcctaccccatagcctt Alignment from Spaln_aa2Genome GATTCCAAAAGAGGATTTGGAATTGCCGTGTCGGGAGGCAGAGACAACCCCCACTTTGAAAATGGGGAGACGTCAATCGTCATCTCAGATGTGCTCCCAGGTGGACCCGCTGATGGCTTGCTTCA ctcctttagttcttatgtctcctctacacaatttcctttttcctgcatagGATTCCAGGAAAGGATTCGGGATTGCTGTTTCAGGTGGAAAAGACAACCCTCACCTTGAAAATGGGGAGGCATCAATTGTCATCTCAGATGTGCTA---------CCTGCTGATGGCTTACTCAAgttagtcagcctctgtgcgtgcacctttttggttcctaccccatagcctt Alignment from Spaln_nt2Genome GATTCCAAAAGAGGATTTGGAATTGCCGTGTCGGGAGGCAGAGACAACCCCCACTTTGAAAATGGGGAGACGTCAATCGTCATCTCAGATGTGCTCCCAGGTGGACCCGCTGATGGCTTGCTTCA ctcctttagttcttatgtctcctctacacaatttcctttttcctgcatagGATTCCAGGAAAGGATTCGGGATTGCTGTTTCAGGTGGAAAAGACAACCCTCACCTTGAAAATGGGGAGGCATCAATTGTCATCTCAGATGTGCT---------ACCTGCTGATGGCTTACTCAAgttagtcagcctctgtgcgtgcacctttttggttcctaccccatagcctt Alignment from Pairagon GATTCCAAAAGAGGATTTGGAATTGCCGTGTCGGGAGGCAGAGACAACCCCCACTTTGAAAATGGGGAGACGTCAATCGTCATCTCAGATGTGCTCCCAGGTGGACCCGCTGATGGCTTGCTTCA ctcctttagttcttatgtctcctctacacaatttcctttttcctgcatagGATTCCAGGAAAGGATTCGGGATTGCTGTTTCAGGTGGAAAAGACAACCCTCACCTTGAAAATGGGGAGGCATCAATTGTCATCTCAGATGTGCT---------ACCTGCTGATGGCTTACTCAAgttagtcagcctctgtgcgtgcacctttttggttcctaccccatagcctt Alignment from Exonerate_protein2genome GATTCCAAAAGAGGATTTGGAATTGCCGTGTCGGGAGGCAGAGACAACCCCCACTTTGAAAATGGGGAGACGTCAATCGTCATCTCAGATGTGCTCCCAGGTGGACCCGCTGATGGCTTGCTTCA ctcctttagttcttatgtctcctctacacaatttcctttttcctgcatagGATTCCAGGAAAGGATTCGGGATTGCTGTTTCAGGTGGAAAAGACAACCCTCACCTTGAAAATGGGGAGGCATCAATTGTCATCTCAGATGTGCTA---------CCTGCTGATGGCTTACTCAAgttagtcagcctctgtgcgtgcacctttttggttcctaccccatagcctt Alignment from Exonerate_coding2genome GATTCCAAAAGAGGATTTGGAATTGCCGTGTCGGGAGGCAGAGACAACCCCCACTTTGAAAATGGGGAGACGTCAATCGTCATCTCAGATGTGCTCCCAGGTGGACCCGCTGATGGCTTGCTTCA ctcctttagttcttatgtctcctctacacaatttcctttttcctgcatagGATTCCAGGAAAGGATTCGGGATTGCTGTTTCAGGTGGAAAAGACAACCCTCACCTTGAAAATGGGGAGGCATCAATTGTCATCTCAGATGTGCTA---------CCTGCTGATGGCTTACTCAAgttagtcagcctctgtgcgtgcacctttttggttcctaccccatagcctt Alignment from GeneWise GATTCCAAAAGAGGATTTGGAATTGCCGTGTCGGGAGGCAGAGACAACCCCCACTTTGAAAATGGGGAGACGTCAATCGTCATCTCAGATGTGCTCCCAGGTGGACCCGCTGATGGCTTGCTTCA ctcctttagttcttatgtctcctctacacaatttcctttttcctgcatagGATTCCAGGAAAGGATTCGGGATTGCTGTTTCAGGTGGAAAAGACAACCCTCACCTTGAAAATGGGGAGGCATCAATTGTCATCTCAGATGTGCTACCT---------GCTGATGGCTTACTCAAgttagtcagcctctgtgcgtgcacctttttggttcctaccccatagcctt #### Tle4_ID3623_15 --> 1 - 0 Original Alignment aGCATACTCCTTTCACGTCAGTGCCGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCTGATGCCCTCATTGGACCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAGGTGGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTGTACACAGGTGGCAAGGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTCTCTCAGCTGGACTGTCTG tagtttgcaatactctttgttatatactttgtggctgtgtgtttccacagaACATACTCCTTTCATCTGAGTGCTGATGGCCAGATGCAGCAGGTCCCTTTTCCCCCTGATGCACTCATAGGTCCTGGAATACCTCGACATGCACGGCTAATAAACACCCTCAACCATGGGGAAGTGGTGTGTGCAGTAGCCATAAGCAACCCAACAAGGCATGTGTACACTGGTGGTAAAGGTTGTGTTAAGGTCTGGGATATCAGTTACCCTGGCAACAAAGCTCCTTTGTCTCAACTAGCCTGTTTAgtaagccgacagggaaagatacgtcaacagtggtaaagagagtgagttgt Alignment from CESAR aGCATACTCCTTTCACGTCAGTGCCGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCTGATGCCCTCATTGGACCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAGGTGGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTGTACACAGGTGGCAAGGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTCTCTCAGCTGGACTGTCTG tagtttgcaatactctttgttatatactttgtggctgtgtgtttccacagaACATACTCCTTTCATCTGAGTGCTGATGGCCAGATGCAGCAGGTCCCTTTTCCCCCTGATGCACTCATAGGTCCTGGAATACCTCGACATGCACGGCTAATAAACACCCTCAACCATGGGGAAGTGGTGTGTGCAGTAGCCATAAGCAACCCAACAAGGCATGTGTACACTGGTGGTAAAGGTTGTGTTAAGGTCTGGGATATCAGTTACCCTGGCAACAAAGCTCCTTTGTCTCAACTAGCCTGTTTAgtaagccgacagggaaagatacgtcaacagtggtaaagagagtgagttgt Alignment from Spaln_aa2Genome AGCATACTCCTTTCACGTCAGTGCCGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCTGATGCCCTCATTGGACCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAGGTGGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTGTACACAGGTGGCAAGGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTCTCTCAGCTGGACTGTCTG tagtttgcaatactctttgttatatactttgtggctgtgtgtttccacagAACATACTCCTTTCATCTGAGTGCTGATGGCCAGATGCAGCAGGTCCCTTTTCCCCCTGATGCACTCATAGGTCCTGGAATACCTCGACATGCACGGCTAATAAACACCCTCAACCATGGGGAAGTGGTGTGTGCAGTAGCCATAAGCAACCCAACAAGGCATGTGTACACTGGTGGTAAAGGTTGTGTTAAGGTCTGGGATATCAGTTACCCTGGCAACAAAGCTCCTTTGTCTCAACTAGCCTGTTTAgtaagccgacagggaaagatacgtcaacagtggtaaagagagtgagttgt Alignment from Spaln_nt2Genome AGCATACTCCTTTCACGTCAGTGCCGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCTGATGCCCTCATTGGACCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAGGTGGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTGTACACAGGTGGCAAGGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTCTCTCAGCTGGACTGTCTG tagtttgcaatactctttgttatatactttgtggctgtgtgtttccacagAACATACTCCTTTCATCTGAGTGCTGATGGCCAGATGCAGCAGGTCCCTTTTCCCCCTGATGCACTCATAGGTCCTGGAATACCTCGACATGCACGGCTAATAAACACCCTCAACCATGGGGAAGTGGTGTGTGCAGTAGCCATAAGCAACCCAACAAGGCATGTGTACACTGGTGGTAAAGGTTGTGTTAAGGTCTGGGATATCAGTTACCCTGGCAACAAAGCTCCTTTGTCTCAACTAGCCTGTTTAgtaagccgacagggaaagatacgtcaacagtggtaaagagagtgagttgt Alignment from Pairagon AGCATACTCCTTTCACGTCAGTGCCGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCTGATGCCCTCATTGGACCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAGGTGGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTGTACACAGGTGGCAAGGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTCTCTCAGCTGGACTGTCTG tagtttgcaatactctttgttatatactttgtggctgtgtgtttccacagAACATACTCCTTTCATCTGAGTGCTGATGGCCAGATGCAGCAGGTCCCTTTTCCCCCTGATGCACTCATAGGTCCTGGAATACCTCGACATGCACGGCTAATAAACACCCTCAACCATGGGGAAGTGGTGTGTGCAGTAGCCATAAGCAACCCAACAAGGCATGTGTACACTGGTGGTAAAGGTTGTGTTAAGGTCTGGGATATCAGTTACCCTGGCAACAAAGCTCCTTTGTCTCAACTAGCCTGTTTAgtaagccgacagggaaagatacgtcaacagtggtaaagagagtgagttgt Alignment from Exonerate_protein2genome AGCATACTCCTTTCACGTCAGTGCCGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCTGATGCCCTCATTGGACCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAGGTGGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTGTACACAGGTGGCAAGGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTCTCTCAGCTGGACTGTCTG tagtttgcaatactctttgttatatactttgtggctgtgtgtttccacagAACATACTCCTTTCATCTGAGTGCTGATGGCCAGATGCAGCAGGTCCCTTTTCCCCCTGATGCACTCATAGGTCCTGGAATACCTCGACATGCACGGCTAATAAACACCCTCAACCATGGGGAAGTGGTGTGTGCAGTAGCCATAAGCAACCCAACAAGGCATGTGTACACTGGTGGTAAAGGTTGTGTTAAGGTCTGGGATATCAGTTACCCTGGCAACAAAGCTCCTTTGTCTCAACTAGCCTGTTTAgtaagccgacagggaaagatacgtcaacagtggtaaagagagtgagttgt Alignment from Exonerate_coding2genome AGCATACTCCTTTCACGTCAGTGCCGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCTGATGCCCTCATTGGACCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAGGTGGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTGTACACAGGTGGCAAGGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTCTCTCAGCTGGACTGTCTG tagtttgcaatactctttgttatatactttgtggctgtgtgtttccacagAACATACTCCTTTCATCTGAGTGCTGATGGCCAGATGCAGCAGGTCCCTTTTCCCCCTGATGCACTCATAGGTCCTGGAATACCTCGACATGCACGGCTAATAAACACCCTCAACCATGGGGAAGTGGTGTGTGCAGTAGCCATAAGCAACCCAACAAGGCATGTGTACACTGGTGGTAAAGGTTGTGTTAAGGTCTGGGATATCAGTTACCCTGGCAACAAAGCTCCTTTGTCTCAACTAGCCTGTTTAgtaagccgacagggaaagatacgtcaacagtggtaaagagagtgagttgt Alignment from GeneWise AGCATACTCCTTTCACGTCAGTGCCGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCTGATGCCCTCATTGGACCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAGGTGGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTGTACACAGGTGGCAAGGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTCTCTCAGCTGGACTGTCTG tagtttgcaatactctttgttatatactttgtggctgtgtgtttccacagAACATACTCCTTTCATCTGAGTGCTGATGGCCAGATGCAGCAGGTCCCTTTTCCCCCTGATGCACTCATAGGTCCTGGAATACCTCGACATGCACGGCTAATAAACACCCTCAACCATGGGGAAGTGGTGTGTGCAGTAGCCATAAGCAACCCAACAAGGCATGTGTACACTGGTGGTAAAGGTTGTGTTAAGGTCTGGGATATCAGTTACCCTGGCAACAAAGCTCCTTTGTCTCAACTAGCCTGTTTAgtaagccgacagggaaagatacgtcaacagtggtaaagagagtgagttgt #### Tle4_ID3629_10 --> 0 - 0 Original Alignment GACAGTGATGGTGAGAAGAGTGATGACAACTTGGTAGTTGATGTGTCCAATGAG acagggggacttttgcaccctcctgctaaaactcttatctctgcccctagGACAGTGATGGTGAGAAGACTGATGATAACCTGGTAGTTGAGGTCTCTAATGAGgtaagatgttcacaagttgtgacacagttggggtgtctactgacttgtta Alignment from CESAR GACAGTGATGGTGAGAAGAGTGATGACAACTTGGTAGTTGATGTGTCCAATGAG acagggggacttttgcaccctcctgctaaaactcttatctctgcccctagGACAGTGATGGTGAGAAGACTGATGATAACCTGGTAGTTGAGGTCTCTAATGAGgtaagatgttcacaagttgtgacacagttggggtgtctactgacttgtta Alignment from Spaln_aa2Genome GACAGTGATGGTGAGAAGAGTGATGACAACTTGGTAGTTGATGTGTCCAATGAG acagggggacttttgcaccctcctgctaaaactcttatctctgcccctagGACAGTGATGGTGAGAAGACTGATGATAACCTGGTAGTTGAGGTCTCTAATGAGgtaagatgttcacaagttgtgacacagttggggtgtctactgacttgtta Alignment from Spaln_nt2Genome GACAGTGATGGTGAGAAGAGTGATGACAACTTGGTAGTTGATGTGTCCAATGAG acagggggacttttgcaccctcctgctaaaactcttatctctgcccctagGACAGTGATGGTGAGAAGACTGATGATAACCTGGTAGTTGAGGTCTCTAATGAGgtaagatgttcacaagttgtgacacagttggggtgtctactgacttgtta Alignment from Pairagon GACAGTGATGGTGAGAAGAGTGATGACAACTTGGTAGTTGATGTGTCCAATGAG acagggggacttttgcaccctcctgctaaaactcttatctctgcccctagGACAGTGATGGTGAGAAGACTGATGATAACCTGGTAGTTGAGGTCTCTAATGAGgtaagatgttcacaagttgtgacacagttggggtgtctactgacttgtta Alignment from Exonerate_protein2genome GACAGTGATGGTGAGAAGAGTGATGACAACTTGGTAGTTGATGTGTCCAATGAG acagggggacttttgcaccctcctgctaaaactcttatctctgcccctagGACAGTGATGGTGAGAAGACTGATGATAACCTGGTAGTTGAGGTCTCTAATGAGgtaagatgttcacaagttgtgacacagttggggtgtctactgacttgtta Alignment from Exonerate_coding2genome GACAGTGATGGTGAGAAGAGTGATGACAACTTGGTAGTTGATGTGTCCAATGAG acagggggacttttgcaccctcctgctaaaactcttatctctgcccctagGACAGTGATGGTGAGAAGACTGATGATAACCTGGTAGTTGAGGTCTCTAATGAGgtaagatgttcacaagttgtgacacagttggggtgtctactgacttgtta Alignment from GeneWise GACAGTGATGGTGAGAAGAGTGATGACAACTTGGTAGTTGATGTGTCCAATGAG acagggggacttttgcaccctcctgctaaaactcttatctctgcccctagGACAGTGATGGTGAGAAGACTGATGATAACCTGGTAGTTGAGGTCTCTAATGAGgtaagatgttcacaagttgtgacacagttggggtgtctactgacttgtta #### Tle4_ID3668_5 --> 0 - 0 Original Alignment GCAGAGATTGTTAAACGACTAAATGCTATCTGTGCACAGGTCATTCCTTTCCTGTCCCAAGAG attctaccgctggttctctctcttctggtctccatttttgtcttggtcagGCAGAGATCGTCAAGCACCTCAATGCTATTTGTGCACAGGTCATTCCATTCTTATCGCAAGATgtaaaattgtagaccttaactagaccttaactgagagtgtcgaacaaaca Alignment from CESAR GCAGAGATTGTTAAACGACTAAATGCTATCTGTGCACAGGTCATTCCTTTCCTGTCCCAAGAG attctaccgctggttctctctcttctggtctccatttttgtcttggtcagGCAGAGATCGTCAAGCACCTCAATGCTATTTGTGCACAGGTCATTCCATTCTTATCGCAAGATgtaaaattgtagaccttaactagaccttaactgagagtgtcgaacaaaca Alignment from Spaln_aa2Genome GCAGAGATTGTTAAACGACTAAATGCTATCTGTGCACAGGTCATTCCTTTCCTGTCCCAAGAG attctaccgctggttctctctcttctggtctccatttttgtcttggtcagGCAGAGATCGTCAAGCACCTCAATGCTATTTGTGCACAGGTCATTCCATTCTTATCGCAAGATgtaaaattgtagaccttaactagaccttaactgagagtgtcgaacaaaca Alignment from Spaln_nt2Genome GCAGAGATTGTTAAACGACTAAATGCTATCTGTGCACAGGTCATTCCTTTCCTGTCCCAAGAG attctaccgctggttctctctcttctggtctccatttttgtcttggtcagGCAGAGATCGTCAAGCACCTCAATGCTATTTGTGCACAGGTCATTCCATTCTTATCGCAAGATgtaaaattgtagaccttaactagaccttaactgagagtgtcgaacaaaca Alignment from Pairagon GCAGAGATTGTTAAACGACTAAATGCTATCTGTGCACAGGTCATTCCTTTCCTGTCCCAAGAG attctaccgctggttctctctcttctggtctccatttttgtcttggtcagGCAGAGATCGTCAAGCACCTCAATGCTATTTGTGCACAGGTCATTCCATTCTTATCGCAAGATgtaaaattgtagaccttaactagaccttaactgagagtgtcgaacaaaca Alignment from Exonerate_protein2genome GCAGAGATTGTTAAACGACTAAATGCTATCTGTGCACAGGTCATTCCTTTCCTGTCCCAAGAG attctaccgctggttctctctcttctggtctccatttttgtcttggtcagGCAGAGATCGTCAAGCACCTCAATGCTATTTGTGCACAGGTCATTCCATTCTTATCGCAAGATgtaaaattgtagaccttaactagaccttaactgagagtgtcgaacaaaca Alignment from Exonerate_coding2genome GCAGAGATTGTTAAACGACTAAATGCTATCTGTGCACAGGTCATTCCTTTCCTGTCCCAAGAG attctaccgctggttctctctcttctggtctccatttttgtcttggtcagGCAGAGATCGTCAAGCACCTCAATGCTATTTGTGCACAGGTCATTCCATTCTTATCGCAAGATgtaaaattgtagaccttaactagaccttaactgagagtgtcgaacaaaca Alignment from GeneWise GCAGAGATTGTTAAACGACTAAATGCTATCTGTGCACAGGTCATTCCTTTCCTGTCCCAAGAG attctaccgctggttctctctcttctggtctccatttttgtcttggtcagGCAGAGATCGTCAAGCACCTCAATGCTATTTGTGCACAGGTCATTCCATTCTTATCGCAAGATgtaaaattgtagaccttaactagaccttaactgagagtgtcgaacaaaca #### Tle4_ID3688_3 --> 1 - 0 Original Alignment tCTGAAGCTGGAATGTGAGAAGCTCGCCAGCGAGAAGACAGAGATGCAGCGGCATTATGTCATG ctattgcctacattttattacactttactcccctccaacctcctttgcagtCTGAAGTTGGAATGTGAGAAGCTTGCCAGCGAGAAGACAGAGATGCAGCGGCATTATGTCATGgtaagtaaagcactataaagatcatcagggattttgtttgttggaacctt Alignment from CESAR tCTGAAGCTGGAATGTGAGAAGCTCGCCAGCGAGAAGACAGAGATGCAGCGGCATTATGTCATG ctattgcctacattttattacactttactcccctccaacctcctttgcagtCTGAAGTTGGAATGTGAGAAGCTTGCCAGCGAGAAGACAGAGATGCAGCGGCATTATGTCATGgtaagtaaagcactataaagatcatcagggattttgtttgttggaacctt Alignment from Spaln_aa2Genome TCTGAAGCTGGAATGTGAGAAGCTCGCCAGCGAGAAGACAGAGATGCAGCGGCATTATGTCATG ctattgcctacattttattacactttactcccctccaacctcctttgcagTCTGAAGTTGGAATGTGAGAAGCTTGCCAGCGAGAAGACAGAGATGCAGCGGCATTATGTCATGgtaagtaaagcactataaagatcatcagggattttgtttgttggaacctt Alignment from Spaln_nt2Genome TCTGAAGCTGGAATGTGAGAAGCTCGCCAGCGAGAAGACAGAGATGCAGCGGCATTATGTCATG ctattgcctacattttattacactttactcccctccaacctcctttgcagTCTGAAGTTGGAATGTGAGAAGCTTGCCAGCGAGAAGACAGAGATGCAGCGGCATTATGTCATGgtaagtaaagcactataaagatcatcagggattttgtttgttggaacctt Alignment from Pairagon TCTGAAGCTGGAATGTGAGAAGCTCGCCAGCGAGAAGACAGAGATGCAGCGGCATTATGTCATG ctattgcctacattttattacactttactcccctccaacctcctttgcagTCTGAAGTTGGAATGTGAGAAGCTTGCCAGCGAGAAGACAGAGATGCAGCGGCATTATGTCATGgtaagtaaagcactataaagatcatcagggattttgtttgttggaacctt Alignment from Exonerate_protein2genome TCTGAAGCTGGAATGTGAGAAGCTCGCCAGCGAGAAGACAGAGATGCAGCGGCATTATGTCATG ctattgcctacattttattacactttactcccctccaacctcctttgcagTCTGAAGTTGGAATGTGAGAAGCTTGCCAGCGAGAAGACAGAGATGCAGCGGCATTATGTCATGgtaagtaaagcactataaagatcatcagggattttgtttgttggaacctt Alignment from Exonerate_coding2genome TCTGAAGCTGGAATGTGAGAAGCTCGCCAGCGAGAAGACAGAGATGCAGCGGCATTATGTCATG ctattgcctacattttattacactttactcccctccaacctcctttgcagTCTGAAGTTGGAATGTGAGAAGCTTGCCAGCGAGAAGACAGAGATGCAGCGGCATTATGTCATGgtaagtaaagcactataaagatcatcagggattttgtttgttggaacctt Alignment from GeneWise TCTGAAGCTGGAATGTGAGAAGCTCGCCAGCGAGAAGACAGAGATGCAGCGGCATTATGTCATG ctattgcctacattttattacactttactcccctccaacctcctttgcagTCTGAAGTTGGAATGTGAGAAGCTTGCCAGCGAGAAGACAGAGATGCAGCGGCATTATGTCATGgtaagtaaagcactataaagatcatcagggattttgtttgttggaacctt #### Tll2_ID8099_20 --> 2 - 0 Original Alignment agTGTGGGGGCAGGCTGAAGGCTGAAGTACAGACCAAAGAGCTCTATTCCCATGCCCAGTTTGGGGACAACAACTACCCGAGCCAGGCCCGCTGTGACTGGGTGATAGTGGCAGAAGACGGTTATGGCGTGGAGCTGATATTCCGGACCTTTGAAGTTGAGGAGGAAGCTGACTGTGGCTACGACTTCATGGAGGCTTATGATGGGTACGACAGCTCGGCACCCAGGCTCGGCCGCTTCTGTGGCTCAGGG attttagctgtacaggaatagtatgactgttctccgttttcatctttcagagTGTGGAGGCAGGCTGAAAGCTGAAGTGCAGACCAAGGACCTCTATTCTCATGCTCAGTTTGGGGACAACAATTACCCAAGCCATGCCCGATGTGACTGGGTGGTAGTGGCAGAAGATGGTTATGGTGTTAAGTTAATATTCCGAACATTCGAAGTTGAGGAGGAGGCTGATTGTCGCTATGACTTCATGGAAGCTTATGATGGCTATGTCAGCTCAGCACCAAAGCTTGGCCACTTCTGTGGCTCAGGGgtagacctcaaaaatgtcatgtccgtggcagtttagatcacagtcacttt Alignment from CESAR agTGTGGGGGCAGGCTGAAGGCTGAAGTACAGACCAAAGAGCTCTATTCCCATGCCCAGTTTGGGGACAACAACTACCCGAGCCAGGCCCGCTGTGACTGGGTGATAGTGGCAGAAGACGGTTATGGCGTGGAGCTGATATTCCGGACCTTTGAAGTTGAGGAGGAAGCTGACTGTGGCTACGACTTCATGGAGGCTTATGATGGGTACGACAGCTCGGCACCCAGGCTCGGCCGCTTCTGTGGCTCAGGG attttagctgtacaggaatagtatgactgttctccgttttcatctttcagagTGTGGAGGCAGGCTGAAAGCTGAAGTGCAGACCAAGGACCTCTATTCTCATGCTCAGTTTGGGGACAACAATTACCCAAGCCATGCCCGATGTGACTGGGTGGTAGTGGCAGAAGATGGTTATGGTGTTAAGTTAATATTCCGAACATTCGAAGTTGAGGAGGAGGCTGATTGTCGCTATGACTTCATGGAAGCTTATGATGGCTATGTCAGCTCAGCACCAAAGCTTGGCCACTTCTGTGGCTCAGGGgtagacctcaaaaatgtcatgtccgtggcagtttagatcacagtcacttt Alignment from Spaln_aa2Genome AGTGTGGGGGCAGGCTGAAGGCTGAAGTACAGACCAAAGAGCTCTATTCCCATGCCCAGTTTGGGGACAACAACTACCCGAGCCAGGCCCGCTGTGACTGGGTGATAGTGGCAGAAGACGGTTATGGCGTGGAGCTGATATTCCGGACCTTTGAAGTTGAGGAGGAAGCTGACTGTGGCTACGACTTCATGGAGGCTTATGATGGGTACGACAGCTCGGCACCCAGGCTCGGCCGCTTCTGTGGCTCAGGG attttagctgtacaggaatagtatgactgttctccgttttcatctttcagAGTGTGGAGGCAGGCTGAAAGCTGAAGTGCAGACCAAGGACCTCTATTCTCATGCTCAGTTTGGGGACAACAATTACCCAAGCCATGCCCGATGTGACTGGGTGGTAGTGGCAGAAGATGGTTATGGTGTTAAGTTAATATTCCGAACATTCGAAGTTGAGGAGGAGGCTGATTGTCGCTATGACTTCATGGAAGCTTATGATGGCTATGTCAGCTCAGCACCAAAGCTTGGCCACTTCTGTGGCTCAGGGgtagacctcaaaaatgtcatgtccgtggcagtttagatcacagtcacttt Alignment from Spaln_nt2Genome AGTGTGGGGGCAGGCTGAAGGCTGAAGTACAGACCAAAGAGCTCTATTCCCATGCCCAGTTTGGGGACAACAACTACCCGAGCCAGGCCCGCTGTGACTGGGTGATAGTGGCAGAAGACGGTTATGGCGTGGAGCTGATATTCCGGACCTTTGAAGTTGAGGAGGAAGCTGACTGTGGCTACGACTTCATGGAGGCTTATGATGGGTACGACAGCTCGGCACCCAGGCTCGGCCGCTTCTGTGGCTCAGGG attttagctgtacaggaatagtatgactgttctccgttttcatctttcagAGTGTGGAGGCAGGCTGAAAGCTGAAGTGCAGACCAAGGACCTCTATTCTCATGCTCAGTTTGGGGACAACAATTACCCAAGCCATGCCCGATGTGACTGGGTGGTAGTGGCAGAAGATGGTTATGGTGTTAAGTTAATATTCCGAACATTCGAAGTTGAGGAGGAGGCTGATTGTCGCTATGACTTCATGGAAGCTTATGATGGCTATGTCAGCTCAGCACCAAAGCTTGGCCACTTCTGTGGCTCAGGGgtagacctcaaaaatgtcatgtccgtggcagtttagatcacagtcacttt Alignment from Pairagon AGTGTGGGGGCAGGCTGAAGGCTGAAGTACAGACCAAAGAGCTCTATTCCCATGCCCAGTTTGGGGACAACAACTACCCGAGCCAGGCCCGCTGTGACTGGGTGATAGTGGCAGAAGACGGTTATGGCGTGGAGCTGATATTCCGGACCTTTGAAGTTGAGGAGGAAGCTGACTGTGGCTACGACTTCATGGAGGCTTATGATGGGTACGACAGCTCGGCACCCAGGCTCGGCCGCTTCTGTGGCTCAGGG attttagctgtacaggaatagtatgactgttctccgttttcatctttcagAGTGTGGAGGCAGGCTGAAAGCTGAAGTGCAGACCAAGGACCTCTATTCTCATGCTCAGTTTGGGGACAACAATTACCCAAGCCATGCCCGATGTGACTGGGTGGTAGTGGCAGAAGATGGTTATGGTGTTAAGTTAATATTCCGAACATTCGAAGTTGAGGAGGAGGCTGATTGTCGCTATGACTTCATGGAAGCTTATGATGGCTATGTCAGCTCAGCACCAAAGCTTGGCCACTTCTGTGGCTCAGGGgtagacctcaaaaatgtcatgtccgtggcagtttagatcacagtcacttt Alignment from Exonerate_protein2genome AGTGTGGGGGCAGGCTGAAGGCTGAAGTACAGACCAAAGAGCTCTATTCCCATGCCCAGTTTGGGGACAACAACTACCCGAGCCAGGCCCGCTGTGACTGGGTGATAGTGGCAGAAGACGGTTATGGCGTGGAGCTGATATTCCGGACCTTTGAAGTTGAGGAGGAAGCTGACTGTGGCTACGACTTCATGGAGGCTTATGATGGGTACGACAGCTCGGCACCCAGGCTCGGCCGCTTCTGTGGCTCAGGG attttagctgtacaggaatagtatgactgttctccgttttcatctttcagAGTGTGGAGGCAGGCTGAAAGCTGAAGTGCAGACCAAGGACCTCTATTCTCATGCTCAGTTTGGGGACAACAATTACCCAAGCCATGCCCGATGTGACTGGGTGGTAGTGGCAGAAGATGGTTATGGTGTTAAGTTAATATTCCGAACATTCGAAGTTGAGGAGGAGGCTGATTGTCGCTATGACTTCATGGAAGCTTATGATGGCTATGTCAGCTCAGCACCAAAGCTTGGCCACTTCTGTGGCTCAGGGgtagacctcaaaaatgtcatgtccgtggcagtttagatcacagtcacttt Alignment from Exonerate_coding2genome AGTGTGGGGGCAGGCTGAAGGCTGAAGTACAGACCAAAGAGCTCTATTCCCATGCCCAGTTTGGGGACAACAACTACCCGAGCCAGGCCCGCTGTGACTGGGTGATAGTGGCAGAAGACGGTTATGGCGTGGAGCTGATATTCCGGACCTTTGAAGTTGAGGAGGAAGCTGACTGTGGCTACGACTTCATGGAGGCTTATGATGGGTACGACAGCTCGGCACCCAGGCTCGGCCGCTTCTGTGGCTCAGGG attttagctgtacaggaatagtatgactgttctccgttttcatctttcagAGTGTGGAGGCAGGCTGAAAGCTGAAGTGCAGACCAAGGACCTCTATTCTCATGCTCAGTTTGGGGACAACAATTACCCAAGCCATGCCCGATGTGACTGGGTGGTAGTGGCAGAAGATGGTTATGGTGTTAAGTTAATATTCCGAACATTCGAAGTTGAGGAGGAGGCTGATTGTCGCTATGACTTCATGGAAGCTTATGATGGCTATGTCAGCTCAGCACCAAAGCTTGGCCACTTCTGTGGCTCAGGGgtagacctcaaaaatgtcatgtccgtggcagtttagatcacagtcacttt Alignment from GeneWise AGTGTGGGGGCAGGCTGAAGGCTGAAGTACAGACCAAAGAGCTCTATTCCCATGCCCAGTTTGGGGACAACAACTACCCGAGCCAGGCCCGCTGTGACTGGGTGATAGTGGCAGAAGACGGTTATGGCGTGGAGCTGATATTCCGGACCTTTGAAGTTGAGGAGGAAGCTGACTGTGGCTACGACTTCATGGAGGCTTATGATGGGTACGACAGCTCGGCACCCAGGCTCGGCCGCTTCTGTGGCTCAGGG attttagctgtacaggaatagtatgactgttctccgttttcatctttcagAGTGTGGAGGCAGGCTGAAAGCTGAAGTGCAGACCAAGGACCTCTATTCTCATGCTCAGTTTGGGGACAACAATTACCCAAGCCATGCCCGATGTGACTGGGTGGTAGTGGCAGAAGATGGTTATGGTGTTAAGTTAATATTCCGAACATTCGAAGTTGAGGAGGAGGCTGATTGTCGCTATGACTTCATGGAAGCTTATGATGGCTATGTCAGCTCAGCACCAAAGCTTGGCCACTTCTGTGGCTCAGGGgtagacctcaaaaatgtcatgtccgtggcagtttagatcacagtcacttt #### Tll2_ID8104_15 --> 2 - 0 Original Alignment tgGCCTGTGGTGGCTTCATTACCAAGCTAAACGGCACCATCACCAGCCCTGGATGGCCGAAGGAGTATCCCACCAACAAGAACTGTGTCTGGCAGGTGGTGGCTCCCGTGCAGTACCGCATCTCACTGCAGTTCGAAGCCTTTGAGCTGGAAGGCAATGAC agagttggcaactcaaaacaagtaactctgcttcttggctctgctcacagtgGCCTGTGGTGGCTTCATTACCAAGCTAAATGGCACCATCACTAGCCCTGTATGGCCGAAGGAGCACCCCACCAACAAGAACTGTGTCTGGCAGGTGGTGGCGCCTGTGCAGTACCGCATCTCACTGCAGTTTAAAGCCTTTGAGTTGGAAGGAAATGATgtaagtaagctcagatacagctcatatgttcagctacaactgtaccttga Alignment from CESAR tgGCCTGTGGTGGCTTCATTACCAAGCTAAACGGCACCATCACCAGCCCTGGATGGCCGAAGGAGTATCCCACCAACAAGAACTGTGTCTGGCAGGTGGTGGCTCCCGTGCAGTACCGCATCTCACTGCAGTTCGAAGCCTTTGAGCTGGAAGGCAATGAC agagttggcaactcaaaacaagtaactctgcttcttggctctgctcacagtgGCCTGTGGTGGCTTCATTACCAAGCTAAATGGCACCATCACTAGCCCTGTATGGCCGAAGGAGCACCCCACCAACAAGAACTGTGTCTGGCAGGTGGTGGCGCCTGTGCAGTACCGCATCTCACTGCAGTTTAAAGCCTTTGAGTTGGAAGGAAATGATgtaagtaagctcagatacagctcatatgttcagctacaactgtaccttga Alignment from Spaln_aa2Genome TGGCCTGTGGTGGCTTCATTACCAAGCTAAACGGCACCATCACCAGCCCTGGATGGCCGAAGGAGTATCCCACCAACAAGAACTGTGTCTGGCAGGTGGTGGCTCCCGTGCAGTACCGCATCTCACTGCAGTTCGAAGCCTTTGAGCTGGAAGGCAATGAC agagttggcaactcaaaacaagtaactctgcttcttggctctgctcacagTGGCCTGTGGTGGCTTCATTACCAAGCTAAATGGCACCATCACTAGCCCTGTATGGCCGAAGGAGCACCCCACCAACAAGAACTGTGTCTGGCAGGTGGTGGCGCCTGTGCAGTACCGCATCTCACTGCAGTTTAAAGCCTTTGAGTTGGAAGGAAATGATgtaagtaagctcagatacagctcatatgttcagctacaactgtaccttga Alignment from Spaln_nt2Genome TGGCCTGTGGTGGCTTCATTACCAAGCTAAACGGCACCATCACCAGCCCTGGATGGCCGAAGGAGTATCCCACCAACAAGAACTGTGTCTGGCAGGTGGTGGCTCCCGTGCAGTACCGCATCTCACTGCAGTTCGAAGCCTTTGAGCTGGAAGGCAATGAC agagttggcaactcaaaacaagtaactctgcttcttggctctgctcacagTGGCCTGTGGTGGCTTCATTACCAAGCTAAATGGCACCATCACTAGCCCTGTATGGCCGAAGGAGCACCCCACCAACAAGAACTGTGTCTGGCAGGTGGTGGCGCCTGTGCAGTACCGCATCTCACTGCAGTTTAAAGCCTTTGAGTTGGAAGGAAATGATgtaagtaagctcagatacagctcatatgttcagctacaactgtaccttga Alignment from Pairagon TGGCCTGTGGTGGCTTCATTACCAAGCTAAACGGCACCATCACCAGCCCTGGATGGCCGAAGGAGTATCCCACCAACAAGAACTGTGTCTGGCAGGTGGTGGCTCCCGTGCAGTACCGCATCTCACTGCAGTTCGAAGCCTTTGAGCTGGAAGGCAATGAC agagttggcaactcaaaacaagtaactctgcttcttggctctgctcacagTGGCCTGTGGTGGCTTCATTACCAAGCTAAATGGCACCATCACTAGCCCTGTATGGCCGAAGGAGCACCCCACCAACAAGAACTGTGTCTGGCAGGTGGTGGCGCCTGTGCAGTACCGCATCTCACTGCAGTTTAAAGCCTTTGAGTTGGAAGGAAATGATgtaagtaagctcagatacagctcatatgttcagctacaactgtaccttga Alignment from Exonerate_protein2genome TGGCCTGTGGTGGCTTCATTACCAAGCTAAACGGCACCATCACCAGCCCTGGATGGCCGAAGGAGTATCCCACCAACAAGAACTGTGTCTGGCAGGTGGTGGCTCCCGTGCAGTACCGCATCTCACTGCAGTTCGAAGCCTTTGAGCTGGAAGGCAATGAC agagttggcaactcaaaacaagtaactctgcttcttggctctgctcacagTGGCCTGTGGTGGCTTCATTACCAAGCTAAATGGCACCATCACTAGCCCTGTATGGCCGAAGGAGCACCCCACCAACAAGAACTGTGTCTGGCAGGTGGTGGCGCCTGTGCAGTACCGCATCTCACTGCAGTTTAAAGCCTTTGAGTTGGAAGGAAATGATgtaagtaagctcagatacagctcatatgttcagctacaactgtaccttga Alignment from Exonerate_coding2genome TGGCCTGTGGTGGCTTCATTACCAAGCTAAACGGCACCATCACCAGCCCTGGATGGCCGAAGGAGTATCCCACCAACAAGAACTGTGTCTGGCAGGTGGTGGCTCCCGTGCAGTACCGCATCTCACTGCAGTTCGAAGCCTTTGAGCTGGAAGGCAATGAC agagttggcaactcaaaacaagtaactctgcttcttggctctgctcacagTGGCCTGTGGTGGCTTCATTACCAAGCTAAATGGCACCATCACTAGCCCTGTATGGCCGAAGGAGCACCCCACCAACAAGAACTGTGTCTGGCAGGTGGTGGCGCCTGTGCAGTACCGCATCTCACTGCAGTTTAAAGCCTTTGAGTTGGAAGGAAATGATgtaagtaagctcagatacagctcatatgttcagctacaactgtaccttga Alignment from GeneWise TGGCCTGTGGTGGCTTCATTACCAAGCTAAACGGCACCATCACCAGCCCTGGATGGCCGAAGGAGTATCCCACCAACAAGAACTGTGTCTGGCAGGTGGTGGCTCCCGTGCAGTACCGCATCTCACTGCAGTTCGAAGCCTTTGAGCTGGAAGGCAATGAC agagttggcaactcaaaacaagtaactctgcttcttggctctgctcacagTGGCCTGTGGTGGCTTCATTACCAAGCTAAATGGCACCATCACTAGCCCTGTATGGCCGAAGGAGCACCCCACCAACAAGAACTGTGTCTGGCAGGTGGTGGCGCCTGTGCAGTACCGCATCTCACTGCAGTTTAAAGCCTTTGAGTTGGAAGGAAATGATgtaagtaagctcagatacagctcatatgttcagctacaactgtaccttga #### Tll2_ID8129_2 --> 2 - 1 Original Alignment ctGTCTTCTGGGGAGATATTGCTCTGGATGAAGATGATCTCAAGTTATTTCACATCGACAAGGCTGAGGACTGGACCAAGCCATCCATTGACAAACCAGGACATGACACTg gggatttaccttggagattattagagttgctcttttctctttcctttcagctGTCTTTTGGGGTGACATAGCTCTGGATGAAGACGATATTAAATTGTACCACATTGATATATCTGATGACTGGATCAAACCATCCATTGACAAACCAGGGCATGACACTggtaagcattttttttgggcactagtgagctgtttggctgcctgctcaaaa Alignment from CESAR ctGTCTTCTGGGGAGATATTGCTCTGGATGAAGATGATCTCAAGTTATTTCACATCGACAAGGCTGAGGACTGGACCAAGCCATCCATTGACAAACCAGGACATGACACTg gggatttaccttggagattattagagttgctcttttctctttcctttcagctGTCTTTTGGGGTGACATAGCTCTGGATGAAGACGATATTAAATTGTACCACATTGATATATCTGATGACTGGATCAAACCATCCATTGACAAACCAGGGCATGACACTggtaagcattttttttgggcactagtgagctgtttggctgcctgctcaaaa Alignment from Spaln_aa2Genome CTGTCTTCTGGGGAGATATTGCTCTGGATGAAGATGATCTCAAGTTATTTCACATCGACAAGGCTGAGGACTGGACCAAGCCATCCATTGACAAACCAGGACATGACACTG gggatttaccttggagattattagagttgctcttttctctttcctttcagCTGTCTTTTGGGGTGACATAGCTCTGGATGAAGACGATATTAAATTGTACCACATTGATATATCTGATGACTGGATCAAACCATCCATTGACAAACCAGGGCATGACACTGgtaagcattttttttgggcactagtgagctgtttggctgcctgctcaaaa Alignment from Spaln_nt2Genome CTGTCTTCTGGGGAGATATTGCTCTGGATGAAGATGATCTCAAGTTATTTCACATCGACAAGGCTGAGGACTGGACCAAGCCATCCATTGACAAACCAGGACATGACACTG gggatttaccttggagattattagagttgctcttttctctttcctttcagCTGTCTTTTGGGGTGACATAGCTCTGGATGAAGACGATATTAAATTGTACCACATTGATATATCTGATGACTGGATCAAACCATCCATTGACAAACCAGGGCATGACACTGgtaagcattttttttgggcactagtgagctgtttggctgcctgctcaaaa Alignment from Pairagon CTGTCTTCTGGGGAGATATTGCTCTGGATGAAGATGATCTCAAGTTATTTCACATCGACAAGGCTGAGGACTGGACCAAGCCATCCATTGACAAACCAGGACATGACACTG gggatttaccttggagattattagagttgctcttttctctttcctttcagCTGTCTTTTGGGGTGACATAGCTCTGGATGAAGACGATATTAAATTGTACCACATTGATATATCTGATGACTGGATCAAACCATCCATTGACAAACCAGGGCATGACACTGgtaagcattttttttgggcactagtgagctgtttggctgcctgctcaaaa Alignment from Exonerate_protein2genome CTGTCTTCTGGGGAGATATTGCTCTGGATGAAGATGATCTCAAGTTATTTCACATCGACAAGGCTGAGGACTGGACCAAGCCATCCATTGACAAACCAGGACATGACACTG gggatttaccttggagattattagagttgctcttttctctttcctttcagCTGTCTTTTGGGGTGACATAGCTCTGGATGAAGACGATATTAAATTGTACCACATTGATATATCTGATGACTGGATCAAACCATCCATTGACAAACCAGGGCATGACACTGgtaagcattttttttgggcactagtgagctgtttggctgcctgctcaaaa Alignment from Exonerate_coding2genome gggatttaccttggagattattagagttgctcttttctctttcctttcagctgtcttttggggtgacatagctctggatgaagacgatattaaattgtaccacattgatatatctgatgactggatcaaaccatccattgacaaaccagggcatgacactggtaagcattttttttgggcactagtgagctgtttggctgcctgctcaaaa Alignment from GeneWise CTGTCTTCTGGGGAGATATTGCTCTGGATGAAGATGATCTCAAGTTATTTCACATCGACAAGGCTGAGGACTGGACCAAGCCATCCATTGACAAACCAGGACATGACACTG gggatttaccttggagattattagagttgctcttttctctttcctttcagCTGTCTTTTGGGGTGACATAGCTCTGGATGAAGACGATATTAAATTGTACCACATTGATATATCTGATGACTGGATCAAACCATCCATTGACAAACCAGGGCATGACACTGgtaagcattttttttgggcactagtgagctgtttggctgcctgctcaaaa #### Tm7sf2_ID1413_7 --> 0 - 1 Original Alignment GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGg aatgtcaagcttgctgctgtcaagggagtgttcatttttatttcctccagGAGTCTATCCTCACCACTATGGACATTATACATGATGGGTTTGGCTTCATGCTTGTCTTTGGAGATTTAGCTTGGATACCACTTATCTACAGCCTGCAGGCCCAGTTCCTTTTATACCACCCCCAACCACTAGGATACCCAATGGCCTTACTCATCTGCCTGCTCCGGggtgagcattagatacccaaaatgctcaaccctgcaccaccacttatgttg Alignment from CESAR GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGg aatgtcaagcttgctgctgtcaagggagtgttcatttttatttcctccagGAGTCTATCCTCACCACTATGGACATTATACATGATGGGTTTGGCTTCATGCTTGTCTTTGGAGATTTAGCTTGGATACCACTTATCTACAGCCTGCAGGCCCAGTTCCTTTTATACCACCCCCAACCACTAGGATACCCAATGGCCTTACTCATCTGCCTGCTCCGGggtgagcattagatacccaaaatgctcaaccctgcaccaccacttatgttg Alignment from Spaln_aa2Genome GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG aatgtcaagcttgctgctgtcaagggagtgttcatttttatttcctccagGAGTCTATCCTCACCACTATGGACATTATACATGATGGGTTTGGCTTCATGCTTGTCTTTGGAGATTTAGCTTGGATACCACTTATCTACAGCCTGCAGGCCCAGTTCCTTTTATACCACCCCCAACCACTAGGATACCCAATGGCCTTACTCATCTGCCTGCTCCGGGgtgagcattagatacccaaaatgctcaaccctgcaccaccacttatgttg Alignment from Spaln_nt2Genome GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG aatgtcaagcttgctgctgtcaagggagtgttcatttttatttcctccagGAGTCTATCCTCACCACTATGGACATTATACATGATGGGTTTGGCTTCATGCTTGTCTTTGGAGATTTAGCTTGGATACCACTTATCTACAGCCTGCAGGCCCAGTTCCTTTTATACCACCCCCAACCACTAGGATACCCAATGGCCTTACTCATCTGCCTGCTCCGGGgtgagcattagatacccaaaatgctcaaccctgcaccaccacttatgttg Alignment from Pairagon GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG aatgtcaagcttgctgctgtcaagggagtgttcatttttatttcctccagGAGTCTATCCTCACCACTATGGACATTATACATGATGGGTTTGGCTTCATGCTTGTCTTTGGAGATTTAGCTTGGATACCACTTATCTACAGCCTGCAGGCCCAGTTCCTTTTATACCACCCCCAACCACTAGGATACCCAATGGCCTTACTCATCTGCCTGCTCCGGGgtgagcattagatacccaaaatgctcaaccctgcaccaccacttatgttg Alignment from Exonerate_protein2genome GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG aatgtcaagcttgctgctgtcaagggagtgttcatttttatttcctccagGAGTCTATCCTCACCACTATGGACATTATACATGATGGGTTTGGCTTCATGCTTGTCTTTGGAGATTTAGCTTGGATACCACTTATCTACAGCCTGCAGGCCCAGTTCCTTTTATACCACCCCCAACCACTAGGATACCCAATGGCCTTACTCATCTGCCTGCTCCGGGgtgagcattagatacccaaaatgctcaaccctgcaccaccacttatgttg Alignment from Exonerate_coding2genome GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG aatgtcaagcttgctgctgtcaagggagtgttcatttttatttcctccagGAGTCTATCCTCACCACTATGGACATTATACATGATGGGTTTGGCTTCATGCTTGTCTTTGGAGATTTAGCTTGGATACCACTTATCTACAGCCTGCAGGCCCAGTTCCTTTTATACCACCCCCAACCACTAGGATACCCAATGGCCTTACTCATCTGCCTGCTCCGGGgtgagcattagatacccaaaatgctcaaccctgcaccaccacttatgttg Alignment from GeneWise GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGG aatgtcaagcttgctgctgtcaagggagtgttcatttttatttcctccagGAGTCTATCCTCACCACTATGGACATTATACATGATGGGTTTGGCTTCATGCTTGTCTTTGGAGATTTAGCTTGGATACCACTTATCTACAGCCTGCAGGCCCAGTTCCTTTTATACCACCCCCAACCACTAGGATACCCAATGGCCTTACTCATCTGCCTGCTCCGGGgtgagcattagatacccaaaatgctcaaccctgcaccaccacttatgttg #### Tm9sf3_ID8136_14 --> 1 - 1 Original Alignment gATGTATGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCGGTGTTTAGCACAGCCTTGGGGATAATGTGTg tcatactgcctcaggggtttggccctgatccctgttttttcttctcacaggATGTACGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCAGTGTTTACCACAGCCTTGGGAATAATGTGTggtaacaggtatctgtattcatacagttagccttccactgttgaaataatt Alignment from CESAR gATGTATGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCGGTGTTTAGCACAGCCTTGGGGATAATGTGTg tcatactgcctcaggggtttggccctgatccctgttttttcttctcacaggATGTACGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCAGTGTTTACCACAGCCTTGGGAATAATGTGTggtaacaggtatctgtattcatacagttagccttccactgttgaaataatt Alignment from Spaln_aa2Genome GATGTATGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCGGTGTTTAGCACAGCCTTGGGGATAATGTGTG tcatactgcctcaggggtttggccctgatccctgttttttcttctcacagGATGTACGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCAGTGTTTACCACAGCCTTGGGAATAATGTGTGgtaacaggtatctgtattcatacagttagccttccactgttgaaataatt Alignment from Spaln_nt2Genome GATGTATGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCGGTGTTTAGCACAGCCTTGGGGATAATGTGTG tcatactgcctcaggggtttggccctgatccctgttttttcttctcacagGATGTACGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCAGTGTTTACCACAGCCTTGGGAATAATGTGTGgtaacaggtatctgtattcatacagttagccttccactgttgaaataatt Alignment from Pairagon GATGTATGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCGGTGTTTAGCACAGCCTTGGGGATAATGTGTG tcatactgcctcaggggtttggccctgatccctgttttttcttctcacagGATGTACGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCAGTGTTTACCACAGCCTTGGGAATAATGTGTGgtaacaggtatctgtattcatacagttagccttccactgttgaaataatt Alignment from Exonerate_protein2genome GATGTATGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCGGTGTTTAGCACAGCCTTGGGGATAATGTGTG tcatactgcctcaggggtttggccctgatccctgttttttcttctcacagGATGTACGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCAGTGTTTACCACAGCCTTGGGAATAATGTGTGgtaacaggtatctgtattcatacagttagccttccactgttgaaataatt Alignment from Exonerate_coding2genome GATGTATGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCGGTGTTTAGCACAGCCTTGGGGATAATGTGTG tcatactgcctcaggggtttggccctgatccctgttttttcttctcacagGATGTACGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCAGTGTTTACCACAGCCTTGGGAATAATGTGTGgtaacaggtatctgtattcatacagttagccttccactgttgaaataatt Alignment from GeneWise GATGTATGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCGGTGTTTAGCACAGCCTTGGGGATAATGTGTG tcatactgcctcaggggtttggccctgatccctgttttttcttctcacagGATGTACGGCTTATTTCAAACATCATTTTACTTTGGCTACATGGCAGTGTTTACCACAGCCTTGGGAATAATGTGTGgtaacaggtatctgtattcatacagttagccttccactgttgaaataatt #### Tm9sf3_ID8137_13 --> 1 - 2 Original Alignment gCAGTGGACGAGTTTCCTGTCTGCGGCGTCGACCGCGATCTACGTTTACATGTACTCCTTTTACTACTACTTCTTCAAAACCaa agatgcccagttactttatttagcttaatctgataacttttcatctttaggCAGTGGACGAGTTTCCTGTCTGCGGCCTCAACTGCTATCTATGTTTATATGTACTCCTTTTACTACTACTTCTTCAAAACCaagtgagtgtgcaatataagtatagagagatatccaacaaaaacagtgctag Alignment from CESAR gCAGTGGACGAGTTTCCTGTCTGCGGCGTCGACCGCGATCTACGTTTACATGTACTCCTTTTACTACTACTTCTTCAAAACCaa agatgcccagttactttatttagcttaatctgataacttttcatctttaggCAGTGGACGAGTTTCCTGTCTGCGGCCTCAACTGCTATCTATGTTTATATGTACTCCTTTTACTACTACTTCTTCAAAACCaagtgagtgtgcaatataagtatagagagatatccaacaaaaacagtgctag Alignment from Spaln_aa2Genome GCAGTGGACGAGTTTCCTGTCTGCGGCGTCGACCGCGATCTACGTTTACATGTACTCCTTTTACTACTACTTCTTCAAAACCAA agatgcccagttactttatttagcttaatctgataacttttcatctttagGCAGTGGACGAGTTTCCTGTCTGCGGCCTCAACTGCTATCTATGTTTATATGTACTCCTTTTACTACTACTTCTTCAAAACCAAgtgagtgtgcaatataagtatagagagatatccaacaaaaacagtgctag Alignment from Spaln_nt2Genome GCAGTGGACGAGTTTCCTGTCTGCGGCGTCGACCGCGATCTACGTTTACATGTACTCCTTTTACTACTACTTCTTCAAAACCAA agatgcccagttactttatttagcttaatctgataacttttcatctttagGCAGTGGACGAGTTTCCTGTCTGCGGCCTCAACTGCTATCTATGTTTATATGTACTCCTTTTACTACTACTTCTTCAAAACCAAgtgagtgtgcaatataagtatagagagatatccaacaaaaacagtgctag Alignment from Pairagon GCAGTGGACGAGTTTCCTGTCTGCGGCGTCGACCGCGATCTACGTTTACATGTACTCCTTTTACTACTACTTCTTCAAAACCAA agatgcccagttactttatttagcttaatctgataacttttcatctttagGCAGTGGACGAGTTTCCTGTCTGCGGCCTCAACTGCTATCTATGTTTATATGTACTCCTTTTACTACTACTTCTTCAAAACCAAgtgagtgtgcaatataagtatagagagatatccaacaaaaacagtgctag Alignment from Exonerate_protein2genome GCAGTGGACGAGTTTCCTGTCTGCGGCGTCGACCGCGATCTACGTTTACATGTACTCCTTTTACTACTACTTCTTCAAAACCAA agatgcccagttactttatttagcttaatctgataacttttcatctttagGCAGTGGACGAGTTTCCTGTCTGCGGCCTCAACTGCTATCTATGTTTATATGTACTCCTTTTACTACTACTTCTTCAAAACCAAgtgagtgtgcaatataagtatagagagatatccaacaaaaacagtgctag Alignment from Exonerate_coding2genome GCAGTGGACGAGTTTCCTGTCTGCGGCGTCGACCGCGATCTACGTTTACATGTACTCCTTTTACTACTACTTCTTCAAAACCAA agatgcccagttactttatttagcttaatctgataacttttcatctttagGCAGTGGACGAGTTTCCTGTCTGCGGCCTCAACTGCTATCTATGTTTATATGTACTCCTTTTACTACTACTTCTTCAAAACCAAgtgagtgtgcaatataagtatagagagatatccaacaaaaacagtgctag Alignment from GeneWise GCAGTGGACGAGTTTCCTGTCTGCGGCGTCGACCGCGATCTACGTTTACATGTACTCCTTTTACTACTACTTCTTCAAAACCAA agatgcccagttactttatttagcttaatctgataacttttcatctttagGCAGTGGACGAGTTTCCTGTCTGCGGCCTCAACTGCTATCTATGTTTATATGTACTCCTTTTACTACTACTTCTTCAAAACCAAgtgagtgtgcaatataagtatagagagatatccaacaaaaacagtgctag #### Tm9sf3_ID8139_11 --> 1 - 2 Original Alignment gTTTATGGAGCCTGCAGTTATTGTTTGCCTGGGAGGAATTTTACCTTTTGGATCAATCTTTATTGAAat actttcaccattgtgctaaagatatatatgtttacttaatttcaatgcaggTTTATGGAGCGAGCAGGCATTGTATGCTTAGGAGGAATTTTA---TTGGGATCGATCTTCATTGAGatgtgagtcttatattctctggtgcagggctgggaatcgtagatgagaaata Alignment from CESAR gTTTATGGAGCCTGCAGTTATTGTTTGCCTGGGAGGAATTTTACCTTTTGGATCAATCTTTATTGAAat actttcaccattgtgctaaagatatatatgtttacttaatttcaatgcaggTTTATGGAGCGAGCAGGCATTGTATGCTTAGGAGGAATTTTA---TTGGGATCGATCTTCATTGAGatgtgagtcttatattctctggtgcagggctgggaatcgtagatgagaaata Alignment from Spaln_aa2Genome GTTTATGGAGCCTGCAGTTATTGTTTGCCTGGGAGGAATTTTACCTTTTGGATCAATCTTTATTGAAAT actttcaccattgtgctaaagatatatatgtttacttaatttcaatgcagGTTTATGGAGCGAGCAGGCATTGTATGCTTAGGAGGAATTTTA---TTGGGATCGATCTTCATTGAGATgtgagtcttatattctctggtgcagggctgggaatcgtagatgagaaata Alignment from Spaln_nt2Genome GTTTATGGAGCCTGCAGTTATTGTTTGCCTGGGAGGAATTTTACCTTTTGGATCAATCTTTATTGAAAT actttcaccattgtgctaaagatatatatgtttacttaatttcaatgcagGTTTATGGAGCGAGCAGGCATTGTATGCTTAGGAGGAATTTTA---TTGGGATCGATCTTCATTGAGATgtgagtcttatattctctggtgcagggctgggaatcgtagatgagaaata Alignment from Pairagon GTTTATGGAGCCTGCAGTTATTGTTTGCCTGGGAGGAATTTTACCTTTTGGATCAATCTTTATTGAAAT actttcaccattgtgctaaagatatatatgtttacttaatttcaatgcagGTTTATGGAGCGAGCAGGCATTGTATGCTTAGGAGGAATTTTA---TTGGGATCGATCTTCATTGAGATgtgagtcttatattctctggtgcagggctgggaatcgtagatgagaaata Alignment from Exonerate_protein2genome GTTTATGGAGCCTGCAGTTATTGTTTGCCTGGGAGGAATTTTACCTTTTGGATCAATCTTTATTGAAAT actttcaccattgtgctaaagatatatatgtttacttaatttcaatgcagGTTTATGGAGCGAGCAGGCATTGTATGCTTAGGAGGAATTTTA---TTGGGATCGATCTTCATTGAGATgtgagtcttatattctctggtgcagggctgggaatcgtagatgagaaata Alignment from Exonerate_coding2genome GTTTATGGAGCCTGCAGTTATTGTTTGCCTGGGAGGAATTTTACCTTTTGGATCAATCTTTATTGAAAT actttcaccattgtgctaaagatatatatgtttacttaatttcaatgcagGTTTATGGAGCGAGCAGGCATTGTATGCTTAGGAGGAATTTTA---TTGGGATCGATCTTCATTGAGATgtgagtcttatattctctggtgcagggctgggaatcgtagatgagaaata Alignment from GeneWise GTTTATGGAGCCTGCAGTTATTGTTTGCCTGGGAGGAATTTTACCTTTTGGATCAATCTTTATTGAAAT actttcaccattgtgctaaagatatatatgtttacttaatttcaatgcagGTTTATGGAGCGAGCAGGCATTGTATGCTTAGGAGGAATTTTA---TTGGGATCGATCTTCATTGAGATgtgagtcttatattctctggtgcagggctgggaatcgtagatgagaaata #### Tm9sf3_ID8148_2 --> 0 - 1 Original Alignment TATCAAGATAAAGAAGAAGTTGTTTTATGGATGAATACTGTTGGGCCCTACCACAATCGCCAAGAAACATATAAATACTTTTCACTTCCATTCTGTGTGGGGTCAAAAAAAAGTATCAGTCATTACCATGAAACTTTGGGAGAAGCACTTCAAGGAGTTGAATTAGAATTTAGTGGCCTGGACATTAAATTTAAAg atgtagacatattaaatttgaaattactatgctttttttttatttcatagTATCAAGATAAAGAAAAGGTTGTTCTATGGATGAATGCAGTTGGGCCCTATCACAATCGCCAAGAGACACATAAATACTTTTCACTTTTATTCTGTGTGGGCTCAAAGAAAAGTATCAGTCATTACCATGAAACTTTGGGAGATGCACTTCAACGAGTAGAA---GATTTTAGTGGCCTAGACATAAAATTTAAAggtcagataatgttagtcatgcccacatgtgttggtgtttgtgtcggcgtt Alignment from CESAR TATCAAGATAAAGAAGAAGTTGTTTTATGGATGAATACTGTTGGGCCCTACCACAATCGCCAAGAAACATATAAATACTTTTCACTTCCATTCTGTGTGGGGTCAAAAAAAAGTATCAGTCATTACCATGAAACTTTGGGAGAAGCACTTCAAGGAGTTGAATTAGAATTTAGTGGCCTGGACATTAAATTTAAAg atgtagacatattaaatttgaaattactatgctttttttttatttcatagTATCAAGATAAAGAAAAGGTTGTTCTATGGATGAATGCAGTTGGGCCCTATCACAATCGCCAAGAGACACATAAATACTTTTCACTTTTATTCTGTGTGGGCTCAAAGAAAAGTATCAGTCATTACCATGAAACTTTGGGAGATGCACTTCAACGAGTAGAA---GATTTTAGTGGCCTAGACATAAAATTTAAAggtcagataatgttagtcatgcccacatgtgttggtgtttgtgtcggcgtt Alignment from Spaln_aa2Genome TATCAAGATAAAGAAGAAGTTGTTTTATGGATGAATACTGTTGGGCCCTACCACAATCGCCAAGAAACATATAAATACTTTTCACTTCCATTCTGTGTGGGGTCAAAAAAAAGTATCAGTCATTACCATGAAACTTTGGGAGAAGCACTTCAAGGAGTTGAATTAGAATTTAGTGGCCTGGACATTAAATTTAAAG atgtagacatattaaatttgaaattactatgctttttttttatttcatagTATCAAGATAAAGAAAAGGTTGTTCTATGGATGAATGCAGTTGGGCCCTATCACAATCGCCAAGAGACACATAAATACTTTTCACTTTTATTCTGTGTGGGCTCAAAGAAAAGTATCAGTCATTACCATGAAACTTTGGGAGATGCACTTCAACGAGTAGAA---GATTTTAGTGGCCTAGACATAAAATTTAAAGgtcagataatgttagtcatgcccacatgtgttggtgtttgtgtcggcgtt Alignment from Spaln_nt2Genome TATCAAGATAAAGAAGAAGTTGTTTTATGGATGAATACTGTTGGGCCCTACCACAATCGCCAAGAAACATATAAATACTTTTCACTTCCATTCTGTGTGGGGTCAAAAAAAAGTATCAGTCATTACCATGAAACTTTGGGAGAAGCACTTCAAGGAGTTGAATTAGAATTTAGTGGCCTGGACATTAAATTTAAAG atgtagacatattaaatttgaaattactatgctttttttttatttcatagTATCAAGATAAAGAAAAGGTTGTTCTATGGATGAATGCAGTTGGGCCCTATCACAATCGCCAAGAGACACATAAATACTTTTCACTTTTATTCTGTGTGGGCTCAAAGAAAAGTATCAGTCATTACCATGAAACTTTGGGAGATGCACTTCAACGAGTAGAA---GATTTTAGTGGCCTAGACATAAAATTTAAAGgtcagataatgttagtcatgcccacatgtgttggtgtttgtgtcggcgtt Alignment from Pairagon TATCAAGATAAAGAAGAAGTTGTTTTATGGATGAATACTGTTGGGCCCTACCACAATCGCCAAGAAACATATAAATACTTTTCACTTCCATTCTGTGTGGGGTCAAAAAAAAGTATCAGTCATTACCATGAAACTTTGGGAGAAGCACTTCAAGGAGTTGAATTAGAATTTAGTGGCCTGGACATTAAATTTAAAG atgtagacatattaaatttgaaattactatgctttttttttatttcatagTATCAAGATAAAGAAAAGGTTGTTCTATGGATGAATGCAGTTGGGCCCTATCACAATCGCCAAGAGACACATAAATACTTTTCACTTTTATTCTGTGTGGGCTCAAAGAAAAGTATCAGTCATTACCATGAAACTTTGGGAGATGCACTTCAACGAGTAGA---AGATTTTAGTGGCCTAGACATAAAATTTAAAGgtcagataatgttagtcatgcccacatgtgttggtgtttgtgtcggcgtt Alignment from Exonerate_protein2genome TATCAAGATAAAGAAGAAGTTGTTTTATGGATGAATACTGTTGGGCCCTACCACAATCGCCAAGAAACATATAAATACTTTTCACTTCCATTCTGTGTGGGGTCAAAAAAAAGTATCAGTCATTACCATGAAACTTTGGGAGAAGCACTTCAAGGAGTTGAATTAGAATTTAGTGGCCTGGACATTAAATTTAAAG atgtagacatattaaatttgaaattactatgctttttttttatttcatagTATCAAGATAAAGAAAAGGTTGTTCTATGGATGAATGCAGTTGGGCCCTATCACAATCGCCAAGAGACACATAAATACTTTTCACTTTTATTCTGTGTGGGCTCAAAGAAAAGTATCAGTCATTACCATGAAACTTTGGGAGATGCACTTCAACGAGTAGAA---GATTTTAGTGGCCTAGACATAAAATTTAAAGgtcagataatgttagtcatgcccacatgtgttggtgtttgtgtcggcgtt Alignment from Exonerate_coding2genome TATCAAGATAAAGAAGAAGTTGTTTTATGGATGAATACTGTTGGGCCCTACCACAATCGCCAAGAAACATATAAATACTTTTCACTTCCATTCTGTGTGGGGTCAAAAAAAAGTATCAGTCATTACCATGAAACTTTGGGAGAAGCACTTCAAGGAGTTGAATTAGAATTTAGTGGCCTGGACATTAAATTTAAAG atgtagacatattaaatttgaaattactatgctttttttttatttcatagTATCAAGATAAAGAAAAGGTTGTTCTATGGATGAATGCAGTTGGGCCCTATCACAATCGCCAAGAGACACATAAATACTTTTCACTTTTATTCTGTGTGGGCTCAAAGAAAAGTATCAGTCATTACCATGAAACTTTGGGAGATGCACTTCAACGAGTAGAA---GATTTTAGTGGCCTAGACATAAAATTTAAAGgtcagataatgttagtcatgcccacatgtgttggtgtttgtgtcggcgtt Alignment from GeneWise TATCAAGATAAAGAAGAAGTTGTTTTATGGATGAATACTGTTGGGCCCTACCACAATCGCCAAGAAACATATAAATACTTTTCACTTCCATTCTGTGTGGGGTCAAAAAAAAGTATCAGTCATTACCATGAAACTTTGGGAGAAGCACTTCAAGGAGTTGAATTAGAATTTAGTGGCCTGGACATTAAATTTAAAG atgtagacatattaaatttgaaattactatgctttttttttatttcatagTATCAAGATAAAGAAAAGGTTGTTCTATGGATGAATGCAGTTGGGCCCTATCACAATCGCCAAGAGACACATAAATACTTTTCACTTTTATTCTGTGTGGGCTCAAAGAAAAGTATCAGTCATTACCATGAAACTTTGGGAGATGCACTTCAACGAGTAGAA---GATTTTAGTGGCCTAGACATAAAATTTAAAGgtcagataatgttagtcatgcccacatgtgttggtgtttgtgtcggcgtt #### Tmc1_ID4829_14 --> 0 - 0 Original Alignment GAATTCGTGCGTCTCACCGTTTCTGACGTCCTGACCACTTACGTCACGATCCTCATTGGCGACTTCCTCAGAGCATGTTTCGTGAGGTTCTGCAATTACTGCTGGTGCTGGGACTTAGAATATGGATAT aaattcacattaatgcaggattacactacttttatgctctctgccatcagGAATTTGTGTGCCTCACTGTTTCTGACCTTGTGACCACCTATGTCACAATCCTGATTGGTGGCTTTCTCAGGGGATGTTTGGTAAGGTGTTGCAATTACTGCTGGTGCTGGGACTTAGAATATGGATATgtaagtactatatagcactccctgaatgacattcttcttcatctagaata Alignment from CESAR GAATTCGTGCGTCTCACCGTTTCTGACGTCCTGACCACTTACGTCACGATCCTCATTGGCGACTTCCTCAGAGCATGTTTCGTGAGGTTCTGCAATTACTGCTGGTGCTGGGACTTAGAATATGGATAT aaattcacattaatgcaggattacactacttttatgctctctgccatcagGAATTTGTGTGCCTCACTGTTTCTGACCTTGTGACCACCTATGTCACAATCCTGATTGGTGGCTTTCTCAGGGGATGTTTGGTAAGGTGTTGCAATTACTGCTGGTGCTGGGACTTAGAATATGGATATgtaagtactatatagcactccctgaatgacattcttcttcatctagaata Alignment from Spaln_aa2Genome GAATTCGTGCGTCTCACCGTTTCTGACGTCCTGACCACTTACGTCACGATCCTCATTGGCGACTTCCTCAGAGCATGTTTCGTGAGGTTCTGCAATTACTGCTGGTGCTGGGACTTAGAATATGGATAT aaattcacattaatgcaggattacactacttttatgctctctgccatcagGAATTTGTGTGCCTCACTGTTTCTGACCTTGTGACCACCTATGTCACAATCCTGATTGGTGGCTTTCTCAGGGGATGTTTGGTAAGGTGTTGCAATTACTGCTGGTGCTGGGACTTAGAATATGGATATgtaagtactatatagcactccctgaatgacattcttcttcatctagaata Alignment from Spaln_nt2Genome GAATTCGTGCGTCTCACCGTTTCTGACGTCCTGACCACTTACGTCACGATCCTCATTGGCGACTTCCTCAGAGCATGTTTCGTGAGGTTCTGCAATTACTGCTGGTGCTGGGACTTAGAATATGGATAT aaattcacattaatgcaggattacactacttttatgctctctgccatcagGAATTTGTGTGCCTCACTGTTTCTGACCTTGTGACCACCTATGTCACAATCCTGATTGGTGGCTTTCTCAGGGGATGTTTGGTAAGGTGTTGCAATTACTGCTGGTGCTGGGACTTAGAATATGGATATgtaagtactatatagcactccctgaatgacattcttcttcatctagaata Alignment from Pairagon GAATTCGTGCGTCTCACCGTTTCTGACGTCCTGACCACTTACGTCACGATCCTCATTGGCGACTTCCTCAGAGCATGTTTCGTGAGGTTCTGCAATTACTGCTGGTGCTGGGACTTAGAATATGGATAT aaattcacattaatgcaggattacactacttttatgctctctgccatcagGAATTTGTGTGCCTCACTGTTTCTGACCTTGTGACCACCTATGTCACAATCCTGATTGGTGGCTTTCTCAGGGGATGTTTGGTAAGGTGTTGCAATTACTGCTGGTGCTGGGACTTAGAATATGGATATgtaagtactatatagcactccctgaatgacattcttcttcatctagaata Alignment from Exonerate_protein2genome GAATTCGTGCGTCTCACCGTTTCTGACGTCCTGACCACTTACGTCACGATCCTCATTGGCGACTTCCTCAGAGCATGTTTCGTGAGGTTCTGCAATTACTGCTGGTGCTGGGACTTAGAATATGGATAT aaattcacattaatgcaggattacactacttttatgctctctgccatcagGAATTTGTGTGCCTCACTGTTTCTGACCTTGTGACCACCTATGTCACAATCCTGATTGGTGGCTTTCTCAGGGGATGTTTGGTAAGGTGTTGCAATTACTGCTGGTGCTGGGACTTAGAATATGGATATgtaagtactatatagcactccctgaatgacattcttcttcatctagaata Alignment from Exonerate_coding2genome GAATTCGTGCGTCTCACCGTTTCTGACGTCCTGACCACTTACGTCACGATCCTCATTGGCGACTTCCTCAGAGCATGTTTCGTGAGGTTCTGCAATTACTGCTGGTGCTGGGACTTAGAATATGGATAT aaattcacattaatgcaggattacactacttttatgctctctgccatcagGAATTTGTGTGCCTCACTGTTTCTGACCTTGTGACCACCTATGTCACAATCCTGATTGGTGGCTTTCTCAGGGGATGTTTGGTAAGGTGTTGCAATTACTGCTGGTGCTGGGACTTAGAATATGGATATgtaagtactatatagcactccctgaatgacattcttcttcatctagaata Alignment from GeneWise GAATTCGTGCGTCTCACCGTTTCTGACGTCCTGACCACTTACGTCACGATCCTCATTGGCGACTTCCTCAGAGCATGTTTCGTGAGGTTCTGCAATTACTGCTGGTGCTGGGACTTAGAATATGGATAT aaattcacattaatgcaggattacactacttttatgctctctgccatcagGAATTTGTGTGCCTCACTGTTTCTGACCTTGTGACCACCTATGTCACAATCCTGATTGGTGGCTTTCTCAGGGGATGTTTGGTAAGGTGTTGCAATTACTGCTGGTGCTGGGACTTAGAATATGGATATgtaagtactatatagcactccctgaatgacattcttcttcatctagaata #### Tmc1_ID4830_13 --> 0 - 0 Original Alignment ATTGAAGAGGAGAAGCTTGTGAAGGCCAATATTACCCTGTGGGAA------GCCAACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACACCACAGGAGCACCCTTTTTCGTTCATCCTGCAGATGTCCCTCGCGGTCCCTGCTGGGAAACAATGGTGGGGCAG gaattcatgacctatgatagccatttctttcccttgttaatctctacaagATTGAGGATGAGAAACTTGTCAAGGCCAACATTACCTTGTGGGATGCCAACACTAACATGATTAAAGCTTATAAT------CTGACTGGGGTCTCTGGAAACCCCATGGGAGCACCCTTT---TTTCATCCTGTAGATATACCTCGTGGCCCTTGTTGGGAGATCATGGTAGGCCAGgtactgctatagtgaggaagagcatgccaacatgacctattctaatgggc Alignment from CESAR ATTGAAGAGGAGAAGCTTGTGAAGGCCAATATTACCCTGTGGGAAGCCAAC------ATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACACCACAGGAGCACCCTTTTTCGTTCATCCTGCAGATGTCCCTCGCGGTCCCTGCTGGGAAACAATGGTGGGGCAG gaattcatgacctatgatagccatttctttcccttgttaatctctacaagATTGAGGATGAGAAACTTGTCAAGGCCAACATTACCTTGTGGGATGCCAACACTAACATGATTAAAGCTTATAAT------CTGACTGGGGTCTCTGGAAACCCCATGGGAGCACCCTTTTTT---CATCCTGTAGATATACCTCGTGGCCCTTGTTGGGAGATCATGGTAGGCCAGgtactgctatagtgaggaagagcatgccaacatgacctattctaatgggc Alignment from Spaln_aa2Genome ATTGAAGAGGAGAAGCTTGTGAAGGCCAATATTACCCTGTGGGAAGCCAACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACACCACAGGAGCACCCTTTTTCGTTCATCCTGCAGATGTCCCTCGCGGTCCCTGCTGGGAAACAATGGTGGGGCAG gaattcatgacctatgatagccatttctttcccttgttaatctctacaagATTGAGGATGAGAAACTTGTCAAGGCCAACATTACCTTGTGGGATGCCAACACTAACATGATTAAAGCTTATAATCTGACTGGGGTCTCTGGAAACCCCATGGGAGCACCCTTTTTT---CATCCTGTAGATATACCTCGTGGCCCTTGTTGGGAGATCATGGTAGGCCAGgtactgctatagtgaggaagagcatgccaacatgacctattctaatgggc Alignment from Spaln_nt2Genome ATTGAAGAGGAGAAGCTTGTGAAGGCCAATATTACCCTGTGGGAAGCCAACA------TGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACACCACAGGAGCACCCTTTTTCGTTCATCCTGCAGATGTCCCTCGCGGTCCCTGCTGGGAAACAATGGTGGGGCAG gaattcatgacctatgatagccatttctttcccttgttaatctctacaagATTGAGGATGAGAAACTTGTCAAGGCCAACATTACCTTGTGGGATGCCAACACTAACATGATTAAAGCTTATAA------TCTGACTGGGGTCTCTGGAAACCCCATGGGAGCACCCTTTT---TTCATCCTGTAGATATACCTCGTGGCCCTTGTTGGGAGATCATGGTAGGCCAGgtactgctatagtgaggaagagcatgccaacatgacctattctaatgggc Alignment from Pairagon ATTGAAGAGGAGAAGCTTGTGAAGGCCAATATTACCCTGTGGGAAGCC------AACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACACCACAGGAGCACCCTTTTTCGTTCATCCTGCAGATGTCCCTCGCGGTCCCTGCTGGGAAACAATGGTGGGGCAG gaattcatgacctatgatagccatttctttcccttgttaatctctacaagATTGAGGATGAGAAACTTGTCAAGGCCAACATTACCTTGTGGGATGCCAACACTAACATGATTAAAGCTTATAA------TCTGACTGGGGTCTCTGGAAACCCCATGGGAGCACCCTTTT---TTCATCCTGTAGATATACCTCGTGGCCCTTGTTGGGAGATCATGGTAGGCCAGgtactgctatagtgaggaagagcatgccaacatgacctattctaatgggc Alignment from Exonerate_protein2genome ATTGAAGAGGAGAAGCTTGTGAAGGCCAATATTACCCTGTGGGAAGCCAACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACACCACAGGAGCACCCTTTTTCGTTCATCCTGCAGATGTCCCTCGCGGTCCCTGCTGGGAAACAATGGTGGGGCAG gaattcatgacctatgatagccatttctttcccttgttaatctctacaagATTGAGGATGAGAAACTTGTCAAGGCCAACATTACCTTGTGGGATGCCAACACTAACATGATTAAAGCTTATAATCTGACTGGGGTCTCTGGAAACCCCATGGGAGCACCCTTTTTT---CATCCTGTAGATATACCTCGTGGCCCTTGTTGGGAGATCATGGTAGGCCAGgtactgctatagtgaggaagagcatgccaacatgacctattctaatgggc Alignment from Exonerate_coding2genome ATTGAAGAGGAGAAGCTTGTGAAGGCCAATATTACCCTGTGGGAAGCCAACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACACCACAGGAGCACCCTTTTTCGTTCATCCTGCAGATGTCCCTCGCGGTCCCTGCTGGGAAACAATGGTGGGGCAG gaattcatgacctatgatagccatttctttcccttgttaatctctacaagATTGAGGATGAGAAACTTGTCAAGGCCAACATTACCTTGTGGGATGCCAACACTAACATGATTAAAGCTTATAATCTGACTGGGGTCTCTGGAAACCCCATGGGAGCACCCTTTTTT---CATCCTGTAGATATACCTCGTGGCCCTTGTTGGGAGATCATGGTAGGCCAGgtactgctatagtgaggaagagcatgccaacatgacctattctaatgggc Alignment from GeneWise ATTGAAGAGGAGAAGCTTGTGAAGGCCAATATTACCCTGTGGGAAGCCAAC------ATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACACCACAGGAGCACCCTTTTTCGTTCATCCTGCAGATGTCCCTCGCGGTCCCTGCTGGGAAACAATGGTGGGGCAG gaattcatgacctatgatagccatttctttcccttgttaatctctacaagATTGAGGATGAGAAACTTGTCAAGGCCAACATTACCTTGTGGGATGCCAACACTAACATGATTAAAGCTTATAAT------CTGACTGGGGTCTCTGGAAACCCCATGGGAGCACCCTTTTTT---CATCCTGTAGATATACCTCGTGGCCCTTGTTGGGAGATCATGGTAGGCCAGgtactgctatagtgaggaagagcatgccaacatgacctattctaatgggc #### Tmc1_ID4835_8 --> 0 - 0 Original Alignment TACCTCTGGGGTTTACCGTACGGCAGCTTACCTAGGAAAACAGTCCCAAGAGCTGAAGAAGCATCTGCAGCCAACTTTGGTGTGTTGTATGACTTCAAT cacgtgcagccttcaggtgttgatagcttctggctccttcctcttcacagTACTTGTGGGGTCTCCCATATGGCAGCTCACCTAGAAAAACAATCCCAAGAGCGGAAGAAGCTTCTGCTCCTAACTTTGGTGTGGTATATGATTTCAATgtagggctgctagactacccttcttaatgaacctgttgcgggtcaaaaag Alignment from CESAR TACCTCTGGGGTTTACCGTACGGCAGCTTACCTAGGAAAACAGTCCCAAGAGCTGAAGAAGCATCTGCAGCCAACTTTGGTGTGTTGTATGACTTCAAT cacgtgcagccttcaggtgttgatagcttctggctccttcctcttcacagTACTTGTGGGGTCTCCCATATGGCAGCTCACCTAGAAAAACAATCCCAAGAGCGGAAGAAGCTTCTGCTCCTAACTTTGGTGTGGTATATGATTTCAATgtagggctgctagactacccttcttaatgaacctgttgcgggtcaaaaag Alignment from Spaln_aa2Genome TACCTCTGGGGTTTACCGTACGGCAGCTTACCTAGGAAAACAGTCCCAAGAGCTGAAGAAGCATCTGCAGCCAACTTTGGTGTGTTGTATGACTTCAAT cacgtgcagccttcaggtgttgatagcttctggctccttcctcttcacagTACTTGTGGGGTCTCCCATATGGCAGCTCACCTAGAAAAACAATCCCAAGAGCGGAAGAAGCTTCTGCTCCTAACTTTGGTGTGGTATATGATTTCAATgtagggctgctagactacccttcttaatgaacctgttgcgggtcaaaaag Alignment from Spaln_nt2Genome TACCTCTGGGGTTTACCGTACGGCAGCTTACCTAGGAAAACAGTCCCAAGAGCTGAAGAAGCATCTGCAGCCAACTTTGGTGTGTTGTATGACTTCAAT cacgtgcagccttcaggtgttgatagcttctggctccttcctcttcacagTACTTGTGGGGTCTCCCATATGGCAGCTCACCTAGAAAAACAATCCCAAGAGCGGAAGAAGCTTCTGCTCCTAACTTTGGTGTGGTATATGATTTCAATgtagggctgctagactacccttcttaatgaacctgttgcgggtcaaaaag Alignment from Pairagon TACCTCTGGGGTTTACCGTACGGCAGCTTACCTAGGAAAACAGTCCCAAGAGCTGAAGAAGCATCTGCAGCCAACTTTGGTGTGTTGTATGACTTCAAT cacgtgcagccttcaggtgttgatagcttctggctccttcctcttcacagTACTTGTGGGGTCTCCCATATGGCAGCTCACCTAGAAAAACAATCCCAAGAGCGGAAGAAGCTTCTGCTCCTAACTTTGGTGTGGTATATGATTTCAATgtagggctgctagactacccttcttaatgaacctgttgcgggtcaaaaag Alignment from Exonerate_protein2genome TACCTCTGGGGTTTACCGTACGGCAGCTTACCTAGGAAAACAGTCCCAAGAGCTGAAGAAGCATCTGCAGCCAACTTTGGTGTGTTGTATGACTTCAAT cacgtgcagccttcaggtgttgatagcttctggctccttcctcttcacagTACTTGTGGGGTCTCCCATATGGCAGCTCACCTAGAAAAACAATCCCAAGAGCGGAAGAAGCTTCTGCTCCTAACTTTGGTGTGGTATATGATTTCAATgtagggctgctagactacccttcttaatgaacctgttgcgggtcaaaaag Alignment from Exonerate_coding2genome TACCTCTGGGGTTTACCGTACGGCAGCTTACCTAGGAAAACAGTCCCAAGAGCTGAAGAAGCATCTGCAGCCAACTTTGGTGTGTTGTATGACTTCAAT cacgtgcagccttcaggtgttgatagcttctggctccttcctcttcacagTACTTGTGGGGTCTCCCATATGGCAGCTCACCTAGAAAAACAATCCCAAGAGCGGAAGAAGCTTCTGCTCCTAACTTTGGTGTGGTATATGATTTCAATgtagggctgctagactacccttcttaatgaacctgttgcgggtcaaaaag Alignment from GeneWise TACCTCTGGGGTTTACCGTACGGCAGCTTACCTAGGAAAACAGTCCCAAGAGCTGAAGAAGCATCTGCAGCCAACTTTGGTGTGTTGTATGACTTCAAT cacgtgcagccttcaggtgttgatagcttctggctccttcctcttcacagTACTTGTGGGGTCTCCCATATGGCAGCTCACCTAGAAAAACAATCCCAAGAGCGGAAGAAGCTTCTGCTCCTAACTTTGGTGTGGTATATGATTTCAATgtagggctgctagactacccttcttaatgaacctgttgcgggtcaaaaag #### Tmem179b_ID2369_4 --> 1 - 0 Original Alignment cTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ctacccttaccattcttattacacttatctgctctctctcccctctgcagcTGCTCTGAAGCACAGAAGACTGCTTGGACACCTTCGGGAACTGCTGTGCAGCTTTACTCCAACCTACACACCGCCGAAgtgagatgcaggcgtccataaggagacatcaatacgcttggctctgtgct Alignment from CESAR cTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ctacccttaccattcttattacacttatctgctctctctcccctctgcagcTGCTCTGAAGCACAGAAGACTGCTTGGACACCTTCGGGAACTGCTGTGCAGCTTTACTCCAACCTACACACCGCCGAAgtgagatgcaggcgtccataaggagacatcaatacgcttggctctgtgct Alignment from Spaln_aa2Genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ctacccttaccattcttattacacttatctgctctctctcccctctgcagCTGCTCTGAAGCACAGAAGACTGCTTGGACACCTTCGGGAACTGCTGTGCAGCTTTACTCCAACCTACACACCGCCGAAgtgagatgcaggcgtccataaggagacatcaatacgcttggctctgtgct Alignment from Spaln_nt2Genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ctacccttaccattcttattacacttatctgctctctctcccctctgcagCTGCTCTGAAGCACAGAAGACTGCTTGGACACCTTCGGGAACTGCTGTGCAGCTTTACTCCAACCTACACACCGCCGAAgtgagatgcaggcgtccataaggagacatcaatacgcttggctctgtgct Alignment from Pairagon CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ctacccttaccattcttattacacttatctgctctctctcccctctgcagCTGCTCTGAAGCACAGAAGACTGCTTGGACACCTTCGGGAACTGCTGTGCAGCTTTACTCCAACCTACACACCGCCGAAgtgagatgcaggcgtccataaggagacatcaatacgcttggctctgtgct Alignment from Exonerate_protein2genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ctacccttaccattcttattacacttatctgctctctctcccctctgcagCTGCTCTGAAGCACAGAAGACTGCTTGGACACCTTCGGGAACTGCTGTGCAGCTTTACTCCAACCTACACACCGCCGAAgtgagatgcaggcgtccataaggagacatcaatacgcttggctctgtgct Alignment from Exonerate_coding2genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ctacccttaccattcttattacacttatctgctctctctcccctctgcagCTGCTCTGAAGCACAGAAGACTGCTTGGACACCTTCGGGAACTGCTGTGCAGCTTTACTCCAACCTACACACCGCCGAAgtgagatgcaggcgtccataaggagacatcaatacgcttggctctgtgct Alignment from GeneWise CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ctacccttaccattcttattacacttatctgctctctctcccctctgcagCTGCTCTGAAGCACAGAAGACTGCTTGGACACCTTCGGGAACTGCTGTGCAGCTTTACTCCAACCTACACACCGCCGAAgtgagatgcaggcgtccataaggagacatcaatacgcttggctctgtgct #### Tmem180_ID9864_6 --> 2 - 2 Original Alignment gcATCTCCTATGTCGCTCCTCATCTCAACAACCTGTACTTCCTG---------------CCCCTGTGCCGGCGCTGGGGTGTCTATGCAGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGAGCCTTAGCCTCCTCATGCTGTTGGCTGGCCCAGACCACCCTGGCCTGCTTTGCTTCTTCATTGCCag caccctgggagatttaaccattcctcactaccatcttcattctccaccaggcATTTCCTATGTTGCCCCGCATCTCAACAACCTTTATTTCCTGCCTCTATGCCAAAGGCCCCTGTGCAGACACTGGGGTACCTATGCAGTAGTACGAGGGCTCTTTTTGCTCAAGCTGAGCCTTAGTCTTCTAATGTTGCTGGCTGGGCCAGACCACCCTGGTCTGCTTTGCTCCTTCATTCCCaggtaggtccaacctatttcgcacctcaatagctacttgtatccctttctgc Alignment from CESAR gcATCTCCTATGTCGCTCCTCATCTCAACAACCTGTACTTCCTG---------------CCCCTGTGCCGGCGCTGGGGTGTCTATGCAGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGAGCCTTAGCCTCCTCATGCTGTTGGCTGGCCCAGACCACCCTGGCCTGCTTTGCTTCTTCATTGCCag caccctgggagatttaaccattcctcactaccatcttcattctccaccaggcATTTCCTATGTTGCCCCGCATCTCAACAACCTTTATTTCCTGCCTCTATGCCAAAGGCCCCTGTGCAGACACTGGGGTACCTATGCAGTAGTACGAGGGCTCTTTTTGCTCAAGCTGAGCCTTAGTCTTCTAATGTTGCTGGCTGGGCCAGACCACCCTGGTCTGCTTTGCTCCTTCATTCCCaggtaggtccaacctatttcgcacctcaatagctacttgtacactattccat Alignment from Spaln_aa2Genome GCATCTCCTATGTCGCTCCTCATCTCAACAACCTGTACTTCCTGCCCCTGTGCCGGCGC---------------TGGGGTGTCTATGCAGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGAGCCTTAGCCTCCTCATGCTGTTGGCTGGCCCAGACCACCCTGGCCTGCTTTGCTTCTTCATTGCCAG caccctgggagatttaaccattcctcactaccatcttcattctccaccagGCATTTCCTATGTTGCCCCGCATCTCAACAACCTTTATTTCCTGCCTCTATGCCAAAGGCCCCTGTGCAGACACTGGGGTACCTATGCAGTAGTACGAGGGCTCTTTTTGCTCAAGCTGAGCCTTAGTCTTCTAATGTTGCTGGCTGGGCCAGACCACCCTGGTCTGCTTTGCTCCTTCATTCCCAGgtaggtccaacctatttcgcacctcaatagctacttgtatccctttctgc Alignment from Spaln_nt2Genome GCATCTCCTATGTCGCTCCTCATCTCAACAACCTGTACTTCCTGCC---------------CCTGTGCCGGCGCTGGGGTGTCTATGCAGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGAGCCTTAGCCTCCTCATGCTGTTGGCTGGCCCAGACCACCCTGGCCTGCTTTGCTTCTTCATTGCCAG caccctgggagatttaaccattcctcactaccatcttcattctccaccagGCATTTCCTATGTTGCCCCGCATCTCAACAACCTTTATTTCCTGCCTCTATGCCAAAGGCCCCTGTGCAGACACTGGGGTACCTATGCAGTAGTACGAGGGCTCTTTTTGCTCAAGCTGAGCCTTAGTCTTCTAATGTTGCTGGCTGGGCCAGACCACCCTGGTCTGCTTTGCTCCTTCATTCCCAGgtaggtccaacctatttcgcacctcaatagctacttgtatccctttctgc Alignment from Pairagon GCATCTCCTATGTCGCTCCTCATCTCAACAACCTGTACTTCCT---------------GCCCCTGTGCCGGCGCTGGGGTGTCTATGCAGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGAGCCTTAGCCTCCTCATGCTGTTGGCTGGCCCAGACCACCCTGGCCTGCTTTGCTTCTTCATTGCCAG caccctgggagatttaaccattcctcactaccatcttcattctccaccagGCATTTCCTATGTTGCCCCGCATCTCAACAACCTTTATTTCCTGCCTCTATGCCAAAGGCCCCTGTGCAGACACTGGGGTACCTATGCAGTAGTACGAGGGCTCTTTTTGCTCAAGCTGAGCCTTAGTCTTCTAATGTTGCTGGCTGGGCCAGACCACCCTGGTCTGCTTTGCTCCTTCATTCCCAGgtaggtccaacctatttcgcacctcaatagctacttgtatccctttctgc Alignment from Exonerate_protein2genome GCATCTCCTATGTCGCTCCTCATCTCAACAACCTGTACTTCCTGCCCCTGTGCCGGCGC---------------TGGGGTGTCTATGCAGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGAGCCTTAGCCTCCTCATGCTGTTGGCTGGCCCAGACCACCCTGGCCTGCTTTGCTTCTTCATTGCCAG caccctgggagatttaaccattcctcactaccatcttcattctccaccagGCATTTCCTATGTTGCCCCGCATCTCAACAACCTTTATTTCCTGCCTCTATGCCAAAGGCCCCTGTGCAGACACTGGGGTACCTATGCAGTAGTACGAGGGCTCTTTTTGCTCAAGCTGAGCCTTAGTCTTCTAATGTTGCTGGCTGGGCCAGACCACCCTGGTCTGCTTTGCTCCTTCATTCCCAGgtaggtccaacctatttcgcacctcaatagctacttgtatccctttctgc Alignment from Exonerate_coding2genome GCATCTCCTATGTCGCTCCTCATCTCAACAACCTGTACTTCCTGCCCCTGTGCCGGCGC---------------TGGGGTGTCTATGCAGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGAGCCTTAGCCTCCTCATGCTGTTGGCTGGCCCAGACCACCCTGGCCTGCTTTGCTTCTTCATTGCCAG caccctgggagatttaaccattcctcactaccatcttcattctccaccagGCATTTCCTATGTTGCCCCGCATCTCAACAACCTTTATTTCCTGCCTCTATGCCAAAGGCCCCTGTGCAGACACTGGGGTACCTATGCAGTAGTACGAGGGCTCTTTTTGCTCAAGCTGAGCCTTAGTCTTCTAATGTTGCTGGCTGGGCCAGACCACCCTGGTCTGCTTTGCTCCTTCATTCCCAGgtaggtccaacctatttcgcacctcaatagctacttgtatccctttctgc Alignment from GeneWise GCATCTCCTATGTCGCTCCTCATCTCAACAACCTGTACTTCCTGCCCCTGTGCCGGCGC---------------TGGGGTGTCTATGCAGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGAGCCTTAGCCTCCTCATGCTGTTGGCTGGCCCAGACCACCCTGGCCTGCTTTGCTTCTTCATTGCCAG caccctgggagatttaaccattcctcactaccatcttcattctccaccagGCATTTCCTATGTTGCCCCGCATCTCAACAACCTTTATTTCCTGCCTCTATGCCAAAGGCCCCTGTGCAGACACTGGGGTACCTATGCAGTAGTACGAGGGCTCTTTTTGCTCAAGCTGAGCCTTAGTCTTCTAATGTTGCTGGCTGGGCCAGACCACCCTGGTCTGCTTTGCTCCTTCATTCCCAGgtaggtccaacctatttcgcacctcaatagctacttgtatccctttctgc #### Tmem258_ID2706_2 --> 0 - 2 Original Alignment GAGCTCGAAGCCATGAGTAGGTACACCAGCCCAGTGAACCCGGCTGTCTTCCCTCACCTGACTGTGGTACTTCTGGCCATCGGCATGTTCTTCACTGCCTGGTTCTTCgt tgcatgtagtcgtcattcttttaaatcaccatgactttgtgttgtatcagGAACTGGAAGCAATGAGTAGGTATACCAGTCCAGTGAACCTGGCTGTCTTCCCTCACCTGACTGTGTTACTGCTTGCCATTGGCATGTTCTTCACTGCCTGGTTCTTTgtgtaagttttgtaagatagtgtaagtcttgttttaggactcatctgtcagt Alignment from CESAR GAGCTCGAAGCCATGAGTAGGTACACCAGCCCAGTGAACCCGGCTGTCTTCCCTCACCTGACTGTGGTACTTCTGGCCATCGGCATGTTCTTCACTGCCTGGTTCTTCgt tgcatgtagtcgtcattcttttaaatcaccatgactttgtgttgtatcagGAACTGGAAGCAATGAGTAGGTATACCAGTCCAGTGAACCTGGCTGTCTTCCCTCACCTGACTGTGTTACTGCTTGCCATTGGCATGTTCTTCACTGCCTGGTTCTTTgtgtaagttttgtaagatagtgtaagtcttgttttaggactcatctgtcagt Alignment from Spaln_aa2Genome GAGCTCGAAGCCATGAGTAGGTACACCAGCCCAGTGAACCCGGCTGTCTTCCCTCACCTGACTGTGGTACTTCTGGCCATCGGCATGTTCTTCACTGCCTGGTTCTTCGT tgcatgtagtcgtcattcttttaaatcaccatgactttgtgttgtatcagGAACTGGAAGCAATGAGTAGGTATACCAGTCCAGTGAACCTGGCTGTCTTCCCTCACCTGACTGTGTTACTGCTTGCCATTGGCATGTTCTTCACTGCCTGGTTCTTTGTgtaagttttgtaagatagtgtaagtcttgttttaggactcatctgtcagt Alignment from Spaln_nt2Genome GAGCTCGAAGCCATGAGTAGGTACACCAGCCCAGTGAACCCGGCTGTCTTCCCTCACCTGACTGTGGTACTTCTGGCCATCGGCATGTTCTTCACTGCCTGGTTCTTCGT tgcatgtagtcgtcattcttttaaatcaccatgactttgtgttgtatcagGAACTGGAAGCAATGAGTAGGTATACCAGTCCAGTGAACCTGGCTGTCTTCCCTCACCTGACTGTGTTACTGCTTGCCATTGGCATGTTCTTCACTGCCTGGTTCTTTGTgtaagttttgtaagatagtgtaagtcttgttttaggactcatctgtcagt Alignment from Pairagon ATGGAGCTCGAAGCCATGAGTAGGTACACCAGCCCAGTGAACCCGGCTGTCTTCCCTCACCTGACTGTGGTACTTCTGGCCATCGGCATGTTCTTCACTGCCTGGTTCTTCGT tgcatgtagtcgtcattcttttaaatcaccatgactttgtgttgtatCAGGAACTGGAAGCAATGAGTAGGTATACCAGTCCAGTGAACCTGGCTGTCTTCCCTCACCTGACTGTGTTACTGCTTGCCATTGGCATGTTCTTCACTGCCTGGTTCTTTGTgtaagttttgtaagatagtgtaagtcttgttttaggactcatctgtcagt Alignment from Exonerate_protein2genome ATGGAGCTCGAAGCCATGAGTAGGTACACCAGCCCAGTGAACCCGGCTGTCTTCCCTCACCTGACTGTGGTACTTCTGGCCATCGGCATGTTCTTCACTGCCTGGTTCTTCGT tgcatgtagtcgtcattcttttaaatcaccatgactttgtgttgtatCAGGAACTGGAAGCAATGAGTAGGTATACCAGTCCAGTGAACCTGGCTGTCTTCCCTCACCTGACTGTGTTACTGCTTGCCATTGGCATGTTCTTCACTGCCTGGTTCTTTGTgtaagttttgtaagatagtgtaagtcttgttttaggactcatctgtcagt Alignment from Exonerate_coding2genome ATGGAGCTCGAAGCCATGAGTAGGTACACCAGCCCAGTGAACCCGGCTGTCTTCCCTCACCTGACTGTGGTACTTCTGGCCATCGGCATGTTCTTCACTGCCTGGTTCTTCGT tgcatgtagtcgtcattcttttaaatcaccatgactttgtgttgtatCAGGAACTGGAAGCAATGAGTAGGTATACCAGTCCAGTGAACCTGGCTGTCTTCCCTCACCTGACTGTGTTACTGCTTGCCATTGGCATGTTCTTCACTGCCTGGTTCTTTGTgtaagttttgtaagatagtgtaagtcttgttttaggactcatctgtcagt Alignment from GeneWise ATGGAGCTCGAAGCCATGAGTAGGTACACCAGCCCAGTGAACCCGGCTGTCTTCCCTCACCTGACTGTGGTACTTCTGGCCATCGGCATGTTCTTCACTGCCTGGTTCTTCGT tgcatgtagtcgtcattcttttaaatcaccatgactttgtgttgtatCAGGAACTGGAAGCAATGAGTAGGTATACCAGTCCAGTGAACCTGGCTGTCTTCCCTCACCTGACTGTGTTACTGCTTGCCATTGGCATGTTCTTCACTGCCTGGTTCTTTGTgtaagttttgtaagatagtgtaagtcttgttttaggactcatctgtcagt #### Tmem2_ID4944_6 --> 2 - 0 Original Alignment agATCCCCCAGTACCTGCACGTCGGTGAGATCATAGACGGGATAGACATGAGAGCTGAGGTTGGACTTCTCACCCGCAACATTGTGATCCAAGGAGAGATGGAGGATTCATGCTATGCAGAAAATCACTGCCAGTTCTTCGATTATGACACCTTTGGGGGACACGTCATG acccccctttgatattgagccacccttgattttgtctaccttttttgtagaaATCCCACAATACCTGCATGTTGGTGAGATCATAGATGAGTTAGACATGAAAGCACAGGTTGGGCTCCTTACTCGCAACATTGTGATCCAGGGAGAGATGGAGGATTCATGCTATGCAGAAAACCACTGCCAATTCTTTGATTATGATACATTTGGGGGACAGGTAATGgtaagagggtgtgaactattgatggtgaaagatataagtttcatgtgtgt Alignment from CESAR agATCCCCCAGTACCTGCACGTCGGTGAGATCATAGACGGGATAGACATGAGAGCTGAGGTTGGACTTCTCACCCGCAACATTGTGATCCAAGGAGAGATGGAGGATTCATGCTATGCAGAAAATCACTGCCAGTTCTTCGATTATGACACCTTTGGGGGACACGTCATG acccccctttgatattgagccacccttgattttgtctaccttttttgtagaaATCCCACAATACCTGCATGTTGGTGAGATCATAGATGAGTTAGACATGAAAGCACAGGTTGGGCTCCTTACTCGCAACATTGTGATCCAGGGAGAGATGGAGGATTCATGCTATGCAGAAAACCACTGCCAATTCTTTGATTATGATACATTTGGGGGACAGGTAATGgtaagagggtgtgaactattgatggtgaaagatataagtttcatgtgtgt Alignment from Spaln_aa2Genome AGATCCCCCAGTACCTGCACGTCGGTGAGATCATAGACGGGATAGACATGAGAGCTGAGGTTGGACTTCTCACCCGCAACATTGTGATCCAAGGAGAGATGGAGGATTCATGCTATGCAGAAAATCACTGCCAGTTCTTCGATTATGACACCTTTGGGGGACACGTCATG acccccctttgatattgagccacccttgattttgtctaccttttttgtagAAATCCCACAATACCTGCATGTTGGTGAGATCATAGATGAGTTAGACATGAAAGCACAGGTTGGGCTCCTTACTCGCAACATTGTGATCCAGGGAGAGATGGAGGATTCATGCTATGCAGAAAACCACTGCCAATTCTTTGATTATGATACATTTGGGGGACAGGTAATGgtaagagggtgtgaactattgatggtgaaagatataagtttcatgtgtgt Alignment from Spaln_nt2Genome AGATCCCCCAGTACCTGCACGTCGGTGAGATCATAGACGGGATAGACATGAGAGCTGAGGTTGGACTTCTCACCCGCAACATTGTGATCCAAGGAGAGATGGAGGATTCATGCTATGCAGAAAATCACTGCCAGTTCTTCGATTATGACACCTTTGGGGGACACGTCATG acccccctttgatattgagccacccttgattttgtctaccttttttgtagAAATCCCACAATACCTGCATGTTGGTGAGATCATAGATGAGTTAGACATGAAAGCACAGGTTGGGCTCCTTACTCGCAACATTGTGATCCAGGGAGAGATGGAGGATTCATGCTATGCAGAAAACCACTGCCAATTCTTTGATTATGATACATTTGGGGGACAGGTAATGgtaagagggtgtgaactattgatggtgaaagatataagtttcatgtgtgt Alignment from Pairagon AGATCCCCCAGTACCTGCACGTCGGTGAGATCATAGACGGGATAGACATGAGAGCTGAGGTTGGACTTCTCACCCGCAACATTGTGATCCAAGGAGAGATGGAGGATTCATGCTATGCAGAAAATCACTGCCAGTTCTTCGATTATGACACCTTTGGGGGACACGTCATG acccccctttgatattgagccacccttgattttgtctaccttttttgtagAAATCCCACAATACCTGCATGTTGGTGAGATCATAGATGAGTTAGACATGAAAGCACAGGTTGGGCTCCTTACTCGCAACATTGTGATCCAGGGAGAGATGGAGGATTCATGCTATGCAGAAAACCACTGCCAATTCTTTGATTATGATACATTTGGGGGACAGGTAATGgtaagagggtgtgaactattgatggtgaaagatataagtttcatgtgtgt Alignment from Exonerate_protein2genome AGATCCCCCAGTACCTGCACGTCGGTGAGATCATAGACGGGATAGACATGAGAGCTGAGGTTGGACTTCTCACCCGCAACATTGTGATCCAAGGAGAGATGGAGGATTCATGCTATGCAGAAAATCACTGCCAGTTCTTCGATTATGACACCTTTGGGGGACACGTCATG acccccctttgatattgagccacccttgattttgtctaccttttttgtagAAATCCCACAATACCTGCATGTTGGTGAGATCATAGATGAGTTAGACATGAAAGCACAGGTTGGGCTCCTTACTCGCAACATTGTGATCCAGGGAGAGATGGAGGATTCATGCTATGCAGAAAACCACTGCCAATTCTTTGATTATGATACATTTGGGGGACAGGTAATGgtaagagggtgtgaactattgatggtgaaagatataagtttcatgtgtgt Alignment from Exonerate_coding2genome AGATCCCCCAGTACCTGCACGTCGGTGAGATCATAGACGGGATAGACATGAGAGCTGAGGTTGGACTTCTCACCCGCAACATTGTGATCCAAGGAGAGATGGAGGATTCATGCTATGCAGAAAATCACTGCCAGTTCTTCGATTATGACACCTTTGGGGGACACGTCATG acccccctttgatattgagccacccttgattttgtctaccttttttgtagAAATCCCACAATACCTGCATGTTGGTGAGATCATAGATGAGTTAGACATGAAAGCACAGGTTGGGCTCCTTACTCGCAACATTGTGATCCAGGGAGAGATGGAGGATTCATGCTATGCAGAAAACCACTGCCAATTCTTTGATTATGATACATTTGGGGGACAGGTAATGgtaagagggtgtgaactattgatggtgaaagatataagtttcatgtgtgt Alignment from GeneWise AGATCCCCCAGTACCTGCACGTCGGTGAGATCATAGACGGGATAGACATGAGAGCTGAGGTTGGACTTCTCACCCGCAACATTGTGATCCAAGGAGAGATGGAGGATTCATGCTATGCAGAAAATCACTGCCAGTTCTTCGATTATGACACCTTTGGGGGACACGTCATG acccccctttgatattgagccacccttgattttgtctaccttttttgtagAAATCCCACAATACCTGCATGTTGGTGAGATCATAGATGAGTTAGACATGAAAGCACAGGTTGGGCTCCTTACTCGCAACATTGTGATCCAGGGAGAGATGGAGGATTCATGCTATGCAGAAAACCACTGCCAATTCTTTGATTATGATACATTTGGGGGACAGGTAATGgtaagagggtgtgaactattgatggtgaaagatataagtttcatgtgtgt #### Tmem2_ID4953_14 --> 1 - 2 Original Alignment tGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACGCTACCCAGGAACag tgtgtggtggccacttttgaacacttatgatggattttgttcttcctcagtGATGGTAGTTTTGCAACCGATGAAGGGTCCAGTCAAGAGGTAACACAGTCCCTTTTAGTTGGGGAAAGTAGGATATATGGCTTTCAAGAAGGTCAAAACAAGTACATGGGCTCAGGTGGAATTGACCAGAAACCTCGCAGTCTACCCAGAAATaggtgagatgtgtgtgggtagtggagtacttgacctgtagttcacctgtctg Alignment from CESAR tGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACGCTACCCAGGAACag tgtgtggtggccacttttgaacacttatgatggattttgttcttcctcagtGATGGTAGTTTTGCAACCGATGAAGGGTCCAGTCAAGAGGTAACACAGTCCCTTTTAGTTGGGGAAAGTAGGATATATGGCTTTCAAGAAGGTCAAAACAAGTACATGGGCTCAGGTGGAATTGACCAGAAACCTCGCAGTCTACCCAGAAATaggtgagatgtgtgtgggtagtggagtacttgacctgtagttcacctgtctg Alignment from Spaln_aa2Genome TGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACGCTACCCAGGAACAG tgtgtggtggccacttttgaacacttatgatggattttgttcttcctcagTGATGGTAGTTTTGCAACCGATGAAGGGTCCAGTCAAGAGGTAACACAGTCCCTTTTAGTTGGGGAAAGTAGGATATATGGCTTTCAAGAAGGTCAAAACAAGTACATGGGCTCAGGTGGAATTGACCAGAAACCTCGCAGTCTACCCAGAAATAGgtgagatgtgtgtgggtagtggagtacttgacctgtagttcacctgtctg Alignment from Spaln_nt2Genome TGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACGCTACCCAGGAACAG tgtgtggtggccacttttgaacacttatgatggattttgttcttcctcagTGATGGTAGTTTTGCAACCGATGAAGGGTCCAGTCAAGAGGTAACACAGTCCCTTTTAGTTGGGGAAAGTAGGATATATGGCTTTCAAGAAGGTCAAAACAAGTACATGGGCTCAGGTGGAATTGACCAGAAACCTCGCAGTCTACCCAGAAATAGgtgagatgtgtgtgggtagtggagtacttgacctgtagttcacctgtctg Alignment from Pairagon TGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACGCTACCCAGGAACAG tgtgtggtggccacttttgaacacttatgatggattttgttcttcctcagTGATGGTAGTTTTGCAACCGATGAAGGGTCCAGTCAAGAGGTAACACAGTCCCTTTTAGTTGGGGAAAGTAGGATATATGGCTTTCAAGAAGGTCAAAACAAGTACATGGGCTCAGGTGGAATTGACCAGAAACCTCGCAGTCTACCCAGAAATAGgtgagatgtgtgtgggtagtggagtacttgacctgtagttcacctgtctg Alignment from Exonerate_protein2genome TGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACGCTACCCAGGAACAG tgtgtggtggccacttttgaacacttatgatggattttgttcttcctcagTGATGGTAGTTTTGCAACCGATGAAGGGTCCAGTCAAGAGGTAACACAGTCCCTTTTAGTTGGGGAAAGTAGGATATATGGCTTTCAAGAAGGTCAAAACAAGTACATGGGCTCAGGTGGAATTGACCAGAAACCTCGCAGTCTACCCAGAAATAGgtgagatgtgtgtgggtagtggagtacttgacctgtagttcacctgtctg Alignment from Exonerate_coding2genome TGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACGCTACCCAGGAACAG tgtgtggtggccacttttgaacacttatgatggattttgttcttcctcagTGATGGTAGTTTTGCAACCGATGAAGGGTCCAGTCAAGAGGTAACACAGTCCCTTTTAGTTGGGGAAAGTAGGATATATGGCTTTCAAGAAGGTCAAAACAAGTACATGGGCTCAGGTGGAATTGACCAGAAACCTCGCAGTCTACCCAGAAATAGgtgagatgtgtgtgggtagtggagtacttgacctgtagttcacctgtctg Alignment from GeneWise TGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACGCTACCCAGGAACAG tgtgtggtggccacttttgaacacttatgatggattttgttcttcctcagTGATGGTAGTTTTGCAACCGATGAAGGGTCCAGTCAAGAGGTAACACAGTCCCTTTTAGTTGGGGAAAGTAGGATATATGGCTTTCAAGAAGGTCAAAACAAGTACATGGGCTCAGGTGGAATTGACCAGAAACCTCGCAGTCTACCCAGAAATAGgtgagatgtgtgtgggtagtggagtacttgacctgtagttcacctgtctg #### Tmem2_ID4963_20 --> 0 - 0 Original Alignment ATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGATTCCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCC caacaataatccaattgccgtgagagtgtgtcttatttcttttttttcagATGGTGTTCACTAGTGACCCACACAAAAGCTATCTCCACGTATGCTTTCATTCACCTGGAAAAGCAGAAATTCAGCAAGGTGATCCATCTGTTATTTCTgtacatggagtcctcaggcacatcctcactttttgagagtgcccatgact Alignment from CESAR ATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGATTCCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCC caacaataatccaattgccgtgagagtgtgtcttatttcttttttttcagATGGTGTTCACTAGTGACCCACACAAAAGCTATCTCCACGTATGCTTTCATTCACCTGGAAAAGCAGAAATTCAGCAAGGTGATCCATCTGTTATTTCTgtacatggagtcctcaggcacatcctcactttttgagagtgcccatgact Alignment from Spaln_aa2Genome ATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGATTCCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCC caacaataatccaattgccgtgagagtgtgtcttatttcttttttttcagATGGTGTTCACTAGTGACCCACACAAAAGCTATCTCCACGTATGCTTTCATTCACCTGGAAAAGCAGAAATTCAGCAAGGTGATCCATCTGTTATTTCTgtacatggagtcctcaggcacatcctcactttttgagagtgcccatgact Alignment from Spaln_nt2Genome ATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGATTCCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCC caacaataatccaattgccgtgagagtgtgtcttatttcttttttttcagATGGTGTTCACTAGTGACCCACACAAAAGCTATCTCCACGTATGCTTTCATTCACCTGGAAAAGCAGAAATTCAGCAAGGTGATCCATCTGTTATTTCTgtacatggagtcctcaggcacatcctcactttttgagagtgcccatgact Alignment from Pairagon ATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGATTCCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCC caacaataatccaattgccgtgagagtgtgtcttatttcttttttttcagATGGTGTTCACTAGTGACCCACACAAAAGCTATCTCCACGTATGCTTTCATTCACCTGGAAAAGCAGAAATTCAGCAAGGTGATCCATCTGTTATTTCTgtacatggagtcctcaggcacatcctcactttttgagagtgcccatgact Alignment from Exonerate_protein2genome ATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGATTCCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCC caacaataatccaattgccgtgagagtgtgtcttatttcttttttttcagATGGTGTTCACTAGTGACCCACACAAAAGCTATCTCCACGTATGCTTTCATTCACCTGGAAAAGCAGAAATTCAGCAAGGTGATCCATCTGTTATTTCTgtacatggagtcctcaggcacatcctcactttttgagagtgcccatgact Alignment from Exonerate_coding2genome ATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGATTCCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCC caacaataatccaattgccgtgagagtgtgtcttatttcttttttttcagATGGTGTTCACTAGTGACCCACACAAAAGCTATCTCCACGTATGCTTTCATTCACCTGGAAAAGCAGAAATTCAGCAAGGTGATCCATCTGTTATTTCTgtacatggagtcctcaggcacatcctcactttttgagagtgcccatgact Alignment from GeneWise ATGGTGTTTACCAGTGACCCTCACAAAAGCTACCTCCCTGTACGATTCCAGTCACCTGGGAAAGCAGAAATTCAGCGAGGAGATCCATCCATTATTTCC caacaataatccaattgccgtgagagtgtgtcttatttcttttttttcagATGGTGTTCACTAGTGACCCACACAAAAGCTATCTCCACGTATGCTTTCATTCACCTGGAAAAGCAGAAATTCAGCAAGGTGATCCATCTGTTATTTCTgtacatggagtcctcaggcacatcctcactttttgagagtgcccatgact #### Tnks2_ID7183_4 --> 2 - 2 Original Alignment gtGACTATAAGAAAGATGAACTTCTGGAAAGTGCCag agcaattactgaccaaaagttttgactagattctttctactgctttacaggtGACTATAAAAAGGATGAACTTCTTGAAAGTGCCaggtgagtagttgtatgacacttacagagtctgaatatctggcagtggcagt Alignment from CESAR gtGACTATAAGAAAGATGAACTTCTGGAAAGTGCCag agcaattactgaccaaaagttttgactagattctttctactgctttacaggtGACTATAAAAAGGATGAACTTCTTGAAAGTGCCaggtgagtagttgtatgacacttacagagtctgaatatctggcagtggcagt Alignment from Spaln_aa2Genome GTGACTATAAGAAAGATGAACTTCTGGAAAGTGCCAG agcaattactgaccaaaagttttgactagattctttctactgctttacagGTGACTATAAAAAGGATGAACTTCTTGAAAGTGCCAGgtgagtagttgtatgacacttacagagtctgaatatctggcagtggcagt Alignment from Spaln_nt2Genome GTGACTATAAGAAAGATGAACTTCTGGAAAGTGCCAG agcaattactgaccaaaagttttgactagattctttctactgctttacagGTGACTATAAAAAGGATGAACTTCTTGAAAGTGCCAGgtgagtagttgtatgacacttacagagtctgaatatctggcagtggcagt Alignment from Pairagon GTGACTATAAGAAAGATGAACTTCTGGAAAGTGCCAG agcaattactgaccaaaagttttgactagattctttctactgctttacagGTGACTATAAAAAGGATGAACTTCTTGAAAGTGCCAGgtgagtagttgtatgacacttacagagtctgaatatctggcagtggcagt Alignment from Exonerate_protein2genome GTGACTATAAGAAAGATGAACTTCTGGAAAGTGCCAG agcaattactgaccaaaagttttgactagattctttctactgctttacagGTGACTATAAAAAGGATGAACTTCTTGAAAGTGCCAGgtgagtagttgtatgacacttacagagtctgaatatctggcagtggcagt Alignment from Exonerate_coding2genome GTGACTATAAGAAAGATGAACTTCTGGAAAGTGCCAG agcaattactgaccaaaagttttgactagattctttctactgctttacagGTGACTATAAAAAGGATGAACTTCTTGAAAGTGCCAGgtgagtagttgtatgacacttacagagtctgaatatctggcagtggcagt Alignment from GeneWise agcaattactgaccaaaagttttgactagattctttctactgctttacaggtgactataaaaaggatgaacttcttgaaagtgccaggtgagtagttgtatgacacttacagagtctgaatatctggcagtggcagt #### Tnks2_ID7185_6 --> 0 - 2 Original Alignment TCAACTCCATTGCATTTGGCAGCAGGATACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGGGCTGATGTCCATGCTAAAGATAAAgg gcctagaaaatcatgtatgactgcgtctgactgcccttttgctttctcagTCAACTCCATTGCATTTGGCAGCAGGGTACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGGGCTGATGTCCATGCTAAAGATAAAgggtaaccctgcccattttgggtatagattgatcacatattgagatctggta Alignment from CESAR TCAACTCCATTGCATTTGGCAGCAGGATACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGGGCTGATGTCCATGCTAAAGATAAAgg gcctagaaaatcatgtatgactgcgtctgactgcccttttgctttctcagTCAACTCCATTGCATTTGGCAGCAGGGTACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGGGCTGATGTCCATGCTAAAGATAAAgggtaaccctgcccattttgggtatagattgatcacatattgagatctggta Alignment from Spaln_aa2Genome TCAACTCCATTGCATTTGGCAGCAGGATACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGGGCTGATGTCCATGCTAAAGATAAAGG gcctagaaaatcatgtatgactgcgtctgactgcccttttgctttctcagTCAACTCCATTGCATTTGGCAGCAGGGTACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGGGCTGATGTCCATGCTAAAGATAAAGGgtaaccctgcccattttgggtatagattgatcacatattgagatctggta Alignment from Spaln_nt2Genome TCAACTCCATTGCATTTGGCAGCAGGATACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGGGCTGATGTCCATGCTAAAGATAAAGG gcctagaaaatcatgtatgactgcgtctgactgcccttttgctttctcagTCAACTCCATTGCATTTGGCAGCAGGGTACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGGGCTGATGTCCATGCTAAAGATAAAGGgtaaccctgcccattttgggtatagattgatcacatattgagatctggta Alignment from Pairagon TCAACTCCATTGCATTTGGCAGCAGGATACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGGGCTGATGTCCATGCTAAAGATAAAGG gcctagaaaatcatgtatgactgcgtctgactgcccttttgctttctcagTCAACTCCATTGCATTTGGCAGCAGGGTACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGGGCTGATGTCCATGCTAAAGATAAAGGgtaaccctgcccattttgggtatagattgatcacatattgagatctggta Alignment from Exonerate_protein2genome TCAACTCCATTGCATTTGGCAGCAGGATACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGGGCTGATGTCCATGCTAAAGATAAAGG gcctagaaaatcatgtatgactgcgtctgactgcccttttgctttctcagTCAACTCCATTGCATTTGGCAGCAGGGTACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGGGCTGATGTCCATGCTAAAGATAAAGGgtaaccctgcccattttgggtatagattgatcacatattgagatctggta Alignment from Exonerate_coding2genome TCAACTCCATTGCATTTGGCAGCAGGATACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGGGCTGATGTCCATGCTAAAGATAAAGG gcctagaaaatcatgtatgactgcgtctgactgcccttttgctttctcagTCAACTCCATTGCATTTGGCAGCAGGGTACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGGGCTGATGTCCATGCTAAAGATAAAGGgtaaccctgcccattttgggtatagattgatcacatattgagatctggta Alignment from GeneWise TCAACTCCATTGCATTTGGCAGCAGGATACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGGGCTGATGTCCATGCTAAAGATAAAGG gcctagaaaatcatgtatgactgcgtctgactgcccttttgctttctcagTCAACTCCATTGCATTTGGCAGCAGGGTACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGGGCTGATGTCCATGCTAAAGATAAAGGgtaaccctgcccattttgggtatagattgatcacatattgagatctggta #### Tnks2_ID7190_11 --> 1 - 0 Original Alignment aTTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG aacaaaaatgatatgtggctgtggctgacttgagccatgtcctcccacagaTTCTTGACACCTCTGCATGTGGCTTCCGAAAATGCACATAATGACATTGTTGAAGTAGTGGTGAAACATGAAGCGAAGgtaagtgccataaccaacttctaatgattaagttggtagtatttgtttag Alignment from CESAR aTTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG aacaaaaatgatatgtggctgtggctgacttgagccatgtcctcccacagaTTCTTGACACCTCTGCATGTGGCTTCCGAAAATGCACATAATGACATTGTTGAAGTAGTGGTGAAACATGAAGCGAAGgtaagtgccataaccaacttctaatgattaagttggtagtatttgtttag Alignment from Spaln_aa2Genome ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG aacaaaaatgatatgtggctgtggctgacttgagccatgtcctcccacagATTCTTGACACCTCTGCATGTGGCTTCCGAAAATGCACATAATGACATTGTTGAAGTAGTGGTGAAACATGAAGCGAAGgtaagtgccataaccaacttctaatgattaagttggtagtatttgtttag Alignment from Spaln_nt2Genome ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG aacaaaaatgatatgtggctgtggctgacttgagccatgtcctcccacagATTCTTGACACCTCTGCATGTGGCTTCCGAAAATGCACATAATGACATTGTTGAAGTAGTGGTGAAACATGAAGCGAAGgtaagtgccataaccaacttctaatgattaagttggtagtatttgtttag Alignment from Pairagon ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG aacaaaaatgatatgtggctgtggctgacttgagccatgtcctcccacagATTCTTGACACCTCTGCATGTGGCTTCCGAAAATGCACATAATGACATTGTTGAAGTAGTGGTGAAACATGAAGCGAAGgtaagtgccataaccaacttctaatgattaagttggtagtatttgtttag Alignment from Exonerate_protein2genome ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG aacaaaaatgatatgtggctgtggctgacttgagccatgtcctcccacagATTCTTGACACCTCTGCATGTGGCTTCCGAAAATGCACATAATGACATTGTTGAAGTAGTGGTGAAACATGAAGCGAAGgtaagtgccataaccaacttctaatgattaagttggtagtatttgtttag Alignment from Exonerate_coding2genome ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG aacaaaaatgatatgtggctgtggctgacttgagccatgtcctcccacagATTCTTGACACCTCTGCATGTGGCTTCCGAAAATGCACATAATGACATTGTTGAAGTAGTGGTGAAACATGAAGCGAAGgtaagtgccataaccaacttctaatgattaagttggtagtatttgtttag Alignment from GeneWise ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG aacaaaaatgatatgtggctgtggctgacttgagccatgtcctcccacagATTCTTGACACCTCTGCATGTGGCTTCCGAAAATGCACATAATGACATTGTTGAAGTAGTGGTGAAACATGAAGCGAAGgtaagtgccataaccaacttctaatgattaagttggtagtatttgtttag #### Tnks2_ID7194_15 --> 1 - 0 Original Alignment aGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAG agacaatgattcaaatgtacacctgaaacttcttcctctccttctttaagaGGACTGGTACCTTTGCAT---GCTTGCTCTTATGGACGCTATGAAGTCGCTGAACTATTAGTCAAGCATGGAGTTGTAGTAAATGTAGCTGACTTGTGGAAACTTACCCCTTTACATGAAGCTGCAGCAAAAGGTAAATATGAAATATGCAAACTT---TTTCAAgtgagtttaagtgctcactatctgttatggcctaaataatctttagtatg Alignment from CESAR aGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAG agacaatgattcaaatgtacacctgaaacttcttcctctccttctttaagaGGACTGGTACCTTTGCAT---GCTTGCTCTTATGGACGCTATGAAGTCGCTGAACTATTAGTCAAGCATGGAGTTGTAGTAAATGTAGCTGACTTGTGGAAACTTACCCCTTTACATGAAGCTGCAGCAAAAGGTAAATATGAAATATGCAAACTT---TTTCAAgtgagtttaagtgctcactatctgttatggcctaaataatctttagtatg Alignment from Spaln_aa2Genome AGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAG agacaatgattcaaatgtacacctgaaacttcttcctctccttctttaagAGGACTGGTACCTTTGCAT---GCTTGCTCTTATGGACGCTATGAAGTCGCTGAACTATTAGTCAAGCATGGAGTTGTAGTAAATGTAGCTGACTTGTGGAAACTTACCCCTTTACATGAAGCTGCAGCAAAAGGTAAATATGAAATATGCAAA---CTTTTTCAAgtgagtttaagtgctcactatctgttatggcctaaataatctttagtatg Alignment from Spaln_nt2Genome AGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTC agacaatgattcaaatgtacacctgaaacttcttcctctccttctttaagAGGACTGGTACCTTTGC---ATGCTTGCTCTTATGGACGCTATGAAGTCGCTGAACTATTAGTCAAGCATGGAGTTGTAGTAAATGTAGCTGACTTGTGGAAACTTACCCCTTTACATGAAGCTGCAGCAAAAGGTAAATATGAAATATGCAAACTTTTTCAAgtgagtttaagtgctcactatctgttatggcctaaataatctttagtatg Alignment from Pairagon AGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAG agacaatgattcaaatgtacacctgaaacttcttcctctccttctttaagAGGACTGGTACCTTTGC---ATGCTTGCTCTTATGGACGCTATGAAGTCGCTGAACTATTAGTCAAGCATGGAGTTGTAGTAAATGTAGCTGACTTGTGGAAACTTACCCCTTTACATGAAGCTGCAGCAAAAGGTAAATATGAAATATGCAAACTT---TTTCAAgtgagtttaagtgctcactatctgttatggcctaaataatctttagtatg Alignment from Exonerate_protein2genome AGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAG agacaatgattcaaatgtacacctgaaacttcttcctctccttctttaagAGGACTGGTACCTTTGCAT---GCTTGCTCTTATGGACGCTATGAAGTCGCTGAACTATTAGTCAAGCATGGAGTTGTAGTAAATGTAGCTGACTTGTGGAAACTTACCCCTTTACATGAAGCTGCAGCAAAAGGTAAATATGAAATATGCAAA---CTTTTTCAAgtgagtttaagtgctcactatctgttatggcctaaataatctttagtatg Alignment from Exonerate_coding2genome AGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAG agacaatgattcaaatgtacacctgaaacttcttcctctccttctttaagAGGACTGGTACCTTTGCAT---GCTTGCTCTTATGGACGCTATGAAGTCGCTGAACTATTAGTCAAGCATGGAGTTGTAGTAAATGTAGCTGACTTGTGGAAACTTACCCCTTTACATGAAGCTGCAGCAAAAGGTAAATATGAAATATGCAAA---CTTTTTCAAgtgagtttaagtgctcactatctgttatggcctaaataatctttagtatg Alignment from GeneWise AGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAG agacaatgattcaaatgtacacctgaaacttcttcctctccttctttaagAGGACTGGTACCTTTGCAT---GCTTGCTCTTATGGACGCTATGAAGTCGCTGAACTATTAGTCAAGCATGGAGTTGTAGTAAATGTAGCTGACTTGTGGAAACTTACCCCTTTACATGAAGCTGCAGCAAAAGGTAAATATGAAATATGCAAACTTTTT---CAAgtgagtttaagtgctcactatctgttatggcctaaataatctttagtatg #### Tnks2_ID7195_16 --> 0 - 1 Original Alignment CATGGTGCAGACCCTACAAAGAAAAACAGAGATGGTAATACTCCTCTGGATCTTGTTAAAGATGGAGATACAGATATTCAAGATCTACTTAGAGGTGATGCAGCTTTGCTGGATGCTGCCAAGAAGGGTTGTTTAGCCAGAGTGAAGAAATTGTCTTCTCCTGATAATGTAAATTGCCGTGATACCCAAGGTCGGCATTCTACACCTTTACATTTGGCAg tctgagctaacccatgtgtaagtgactgtgtttcttcatccttcctgcagCATGGTGCAGATCCCACAAAGAAAAACAGGGATGGAAATATTCCATTAGATCTTGTTAAAGATGGAGATACACACATTCAAGACCTACTTAGAGGTGATGCAGCTCTACTGTATGCTGCCAAAAAAGGATGTTTAGCAAGGGTGAAGACATTACCATCTCCTGATAATGTAAACTGTCGGGATAGCCAGGGTCAGCATTCTACACCTTTACATCTAGCAggtgggcgagatcctgacactgtaaattgtaagactggtgtttttttaggt Alignment from CESAR CATGGTGCAGACCCTACAAAGAAAAACAGAGATGGTAATACTCCTCTGGATCTTGTTAAAGATGGAGATACAGATATTCAAGATCTACTTAGAGGTGATGCAGCTTTGCTGGATGCTGCCAAGAAGGGTTGTTTAGCCAGAGTGAAGAAATTGTCTTCTCCTGATAATGTAAATTGCCGTGATACCCAAGGTCGGCATTCTACACCTTTACATTTGGCAg tctgagctaacccatgtgtaagtgactgtgtttcttcatccttcctgcagCATGGTGCAGATCCCACAAAGAAAAACAGGGATGGAAATATTCCATTAGATCTTGTTAAAGATGGAGATACACACATTCAAGACCTACTTAGAGGTGATGCAGCTCTACTGTATGCTGCCAAAAAAGGATGTTTAGCAAGGGTGAAGACATTACCATCTCCTGATAATGTAAACTGTCGGGATAGCCAGGGTCAGCATTCTACACCTTTACATCTAGCAggtgggcgagatcctgacactgtaaattgtaagactggtgtttttttaggt Alignment from Spaln_aa2Genome CATGGTGCAGACCCTACAAAGAAAAACAGAGATGGTAATACTCCTCTGGATCTTGTTAAAGATGGAGATACAGATATTCAAGATCTACTTAGAGGTGATGCAGCTTTGCTGGATGCTGCCAAGAAGGGTTGTTTAGCCAGAGTGAAGAAATTGTCTTCTCCTGATAATGTAAATTGCCGTGATACCCAAGGTCGGCATTCTACACCTTTACATTTGGCAG tctgagctaacccatgtgtaagtgactgtgtttcttcatccttcctgcagCATGGTGCAGATCCCACAAAGAAAAACAGGGATGGAAATATTCCATTAGATCTTGTTAAAGATGGAGATACACACATTCAAGACCTACTTAGAGGTGATGCAGCTCTACTGTATGCTGCCAAAAAAGGATGTTTAGCAAGGGTGAAGACATTACCATCTCCTGATAATGTAAACTGTCGGGATAGCCAGGGTCAGCATTCTACACCTTTACATCTAGCAGgtgggcgagatcctgacactgtaaattgtaagactggtgtttttttaggt Alignment from Spaln_nt2Genome CATGGTGCAGACCCTACAAAGAAAAACAGAGATGGTAATACTCCTCTGGATCTTGTTAAAGATGGAGATACAGATATTCAAGATCTACTTAGAGGTGATGCAGCTTTGCTGGATGCTGCCAAGAAGGGTTGTTTAGCCAGAGTGAAGAAATTGTCTTCTCCTGATAATGTAAATTGCCGTGATACCCAAGGTCGGCATTCTACACCTTTACATTTGGCAG tctgagctaacccatgtgtaagtgactgtgtttcttcatccttcctgcagCATGGTGCAGATCCCACAAAGAAAAACAGGGATGGAAATATTCCATTAGATCTTGTTAAAGATGGAGATACACACATTCAAGACCTACTTAGAGGTGATGCAGCTCTACTGTATGCTGCCAAAAAAGGATGTTTAGCAAGGGTGAAGACATTACCATCTCCTGATAATGTAAACTGTCGGGATAGCCAGGGTCAGCATTCTACACCTTTACATCTAGCAGgtgggcgagatcctgacactgtaaattgtaagactggtgtttttttaggt Alignment from Pairagon CATGGTGCAGACCCTACAAAGAAAAACAGAGATGGTAATACTCCTCTGGATCTTGTTAAAGATGGAGATACAGATATTCAAGATCTACTTAGAGGTGATGCAGCTTTGCTGGATGCTGCCAAGAAGGGTTGTTTAGCCAGAGTGAAGAAATTGTCTTCTCCTGATAATGTAAATTGCCGTGATACCCAAGGTCGGCATTCTACACCTTTACATTTGGCAG tctgagctaacccatgtgtaagtgactgtgtttcttcatccttcctgcagCATGGTGCAGATCCCACAAAGAAAAACAGGGATGGAAATATTCCATTAGATCTTGTTAAAGATGGAGATACACACATTCAAGACCTACTTAGAGGTGATGCAGCTCTACTGTATGCTGCCAAAAAAGGATGTTTAGCAAGGGTGAAGACATTACCATCTCCTGATAATGTAAACTGTCGGGATAGCCAGGGTCAGCATTCTACACCTTTACATCTAGCAGgtgggcgagatcctgacactgtaaattgtaagactggtgtttttttaggt Alignment from Exonerate_protein2genome CAGCATGGTGCAGACCCTACAAAGAAAAACAGAGATGGTAATACTCCTCTGGATCTTGTTAAAGATGGAGATACAGATATTCAAGATCTACTTAGAGGTGATGCAGCTTTGCTGGATGCTGCCAAGAAGGGTTGTTTAGCCAGAGTGAAGAAATTGTCTTCTCCTGATAATGTAAATTGCCGTGATACCCAAGGTCGGCATTCTACACCTTTACATTTGGCAG tctgagctaacccatgtgtaagtgactgtgtttcttcatccttcctgCAGCATGGTGCAGATCCCACAAAGAAAAACAGGGATGGAAATATTCCATTAGATCTTGTTAAAGATGGAGATACACACATTCAAGACCTACTTAGAGGTGATGCAGCTCTACTGTATGCTGCCAAAAAAGGATGTTTAGCAAGGGTGAAGACATTACCATCTCCTGATAATGTAAACTGTCGGGATAGCCAGGGTCAGCATTCTACACCTTTACATCTAGCAGgtgggcgagatcctgacactgtaaattgtaagactggtgtttttttaggt Alignment from Exonerate_coding2genome CAGCATGGTGCAGACCCTACAAAGAAAAACAGAGATGGTAATACTCCTCTGGATCTTGTTAAAGATGGAGATACAGATATTCAAGATCTACTTAGAGGTGATGCAGCTTTGCTGGATGCTGCCAAGAAGGGTTGTTTAGCCAGAGTGAAGAAATTGTCTTCTCCTGATAATGTAAATTGCCGTGATACCCAAGGTCGGCATTCTACACCTTTACATTTGGCAG tctgagctaacccatgtgtaagtgactgtgtttcttcatccttcctgCAGCATGGTGCAGATCCCACAAAGAAAAACAGGGATGGAAATATTCCATTAGATCTTGTTAAAGATGGAGATACACACATTCAAGACCTACTTAGAGGTGATGCAGCTCTACTGTATGCTGCCAAAAAAGGATGTTTAGCAAGGGTGAAGACATTACCATCTCCTGATAATGTAAACTGTCGGGATAGCCAGGGTCAGCATTCTACACCTTTACATCTAGCAGgtgggcgagatcctgacactgtaaattgtaagactggtgtttttttaggt Alignment from GeneWise CATGGTGCAGACCCTACAAAGAAAAACAGAGATGGTAATACTCCTCTGGATCTTGTTAAAGATGGAGATACAGATATTCAAGATCTACTTAGAGGTGATGCAGCTTTGCTGGATGCTGCCAAGAAGGGTTGTTTAGCCAGAGTGAAGAAATTGTCTTCTCCTGATAATGTAAATTGCCGTGATACCCAAGGTCGGCATTCTACACCTTTACATTTGGCAG tctgagctaacccatgtgtaagtgactgtgtttcttcatccttcctgcagCATGGTGCAGATCCCACAAAGAAAAACAGGGATGGAAATATTCCATTAGATCTTGTTAAAGATGGAGATACACACATTCAAGACCTACTTAGAGGTGATGCAGCTCTACTGTATGCTGCCAAAAAAGGATGTTTAGCAAGGGTGAAGACATTACCATCTCCTGATAATGTAAACTGTCGGGATAGCCAGGGTCAGCATTCTACACCTTTACATCTAGCAGgtgggcgagatcctgacactgtaaattgtaagactggtgtttttttaggt #### Tnks2_ID7202_23 --> 0 - 0 Original Alignment ATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCACGCAGGCGGCGTCTTCAACAGATACAACATTCTCAAG caggataattcaatgagattctaataggccccgtgtccttcctgtcccagATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCATGCAGGTGGCGTCTTCAACAGATACAACATTCTTATGgtaacaggtgcctggaaaccaaggcaaaagcttttccttatcactgccac Alignment from CESAR ATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCACGCAGGCGGCGTCTTCAACAGATACAACATTCTCAAG caggataattcaatgagattctaataggccccgtgtccttcctgtcccagATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCATGCAGGTGGCGTCTTCAACAGATACAACATTCTTATGgtaacaggtgcctggaaaccaaggcaaaagcttttccttatcactgccac Alignment from Spaln_aa2Genome ATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCACGCAGGCGGCGTCTTCAACAGATACAACATTCTCAAG caggataattcaatgagattctaataggccccgtgtccttcctgtcccagATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCATGCAGGTGGCGTCTTCAACAGATACAACATTCTTATGgtaacaggtgcctggaaaccaaggcaaaagcttttccttatcactgccac Alignment from Spaln_nt2Genome ATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCACGCAGGCGGCGTCTTCAACAGATACAACATTCTCAAG caggataattcaatgagattctaataggccccgtgtccttcctgtcccagATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCATGCAGGTGGCGTCTTCAACAGATACAACATTCTTATGgtaacaggtgcctggaaaccaaggcaaaagcttttccttatcactgccac Alignment from Pairagon ATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCACGCAGGCGGCGTCTTCAACAGATACAACATTCTCAAG caggataattcaatgagattctaataggccccgtgtccttcctgtcccagATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCATGCAGGTGGCGTCTTCAACAGATACAACATTCTTATGgtaacaggtgcctggaaaccaaggcaaaagcttttccttatcactgccac Alignment from Exonerate_protein2genome ATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCACGCAGGCGGCGTCTTCAACAGATACAACATTCTCAAG caggataattcaatgagattctaataggccccgtgtccttcctgtcccagATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCATGCAGGTGGCGTCTTCAACAGATACAACATTCTTATGgtaacaggtgcctggaaaccaaggcaaaagcttttccttatcactgccac Alignment from Exonerate_coding2genome ATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCACGCAGGCGGCGTCTTCAACAGATACAACATTCTCAAG caggataattcaatgagattctaataggccccgtgtccttcctgtcccagATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCATGCAGGTGGCGTCTTCAACAGATACAACATTCTTATGgtaacaggtgcctggaaaccaaggcaaaagcttttccttatcactgccac Alignment from GeneWise ATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCACGCAGGCGGCGTCTTCAACAGATACAACATTCTCAAG caggataattcaatgagattctaataggccccgtgtccttcctgtcccagATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCATGCAGGTGGCGTCTTCAACAGATACAACATTCTTATGgtaacaggtgcctggaaaccaaggcaaaagcttttccttatcactgccac #### Trpm3_ID5035_2 --> 0 - 2 Original Alignment GCTCAGAAATCCTGGATTGAAAGAGCATTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATag catggggcttttatatgcttttactcgtcactggtattgtttgtccacagGCTCAGAAGTCCTGGATTGAAAGAGCGTTTTATAAAAGAGAATGTGTTCACATCATACCAAGCACCAAAGAACCCCATaggtgattcgaacagaattttctggtacatgaaggaatagttacacaaatcc Alignment from CESAR GCTCAGAAATCCTGGATTGAAAGAGCATTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATag catggggcttttatatgcttttactcgtcactggtattgtttgtccacagGCTCAGAAGTCCTGGATTGAAAGAGCGTTTTATAAAAGAGAATGTGTTCACATCATACCAAGCACCAAAGAACCCCATaggtgattcgaacagaattttctggtacatgaaggaatagttacacaaatcc Alignment from Spaln_aa2Genome GCTCAGAAATCCTGGATTGAAAGAGCATTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATAG catggggcttttatatgcttttactcgtcactggtattgtttgtccacagGCTCAGAAGTCCTGGATTGAAAGAGCGTTTTATAAAAGAGAATGTGTTCACATCATACCAAGCACCAAAGAACCCCATAGgtgattcgaacagaattttctggtacatgaaggaatagttacacaaatcc Alignment from Spaln_nt2Genome GCTCAGAAATCCTGGATTGAAAGAGCATTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATAG catggggcttttatatgcttttactcgtcactggtattgtttgtccacagGCTCAGAAGTCCTGGATTGAAAGAGCGTTTTATAAAAGAGAATGTGTTCACATCATACCAAGCACCAAAGAACCCCATAGgtgattcgaacagaattttctggtacatgaaggaatagttacacaaatcc Alignment from Pairagon GCTCAGAAATCCTGGATTGAAAGAGCATTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATAG catggggcttttatatgcttttactcgtcactggtattgtttgtccacagGCTCAGAAGTCCTGGATTGAAAGAGCGTTTTATAAAAGAGAATGTGTTCACATCATACCAAGCACCAAAGAACCCCATAGgtgattcgaacagaattttctggtacatgaaggaatagttacacaaatcc Alignment from Exonerate_protein2genome GCTCAGAAATCCTGGATTGAAAGAGCATTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATAG catggggcttttatatgcttttactcgtcactggtattgtttgtccacagGCTCAGAAGTCCTGGATTGAAAGAGCGTTTTATAAAAGAGAATGTGTTCACATCATACCAAGCACCAAAGAACCCCATAGgtgattcgaacagaattttctggtacatgaaggaatagttacacaaatcc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCTCAGAAATCCTGGATTGAAAGAGCATTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATAG catggggcttttatatgcttttactcgtcactggtattgtttgtccacagGCTCAGAAGTCCTGGATTGAAAGAGCGTTTTATAAAAGAGAATGTGTTCACATCATACCAAGCACCAAAGAACCCCATAGgtgattcgaacagaattttctggtacatgaaggaatagttacacaaatcc #### Trpm3_ID5038_4 --> 0 - 1 Original Alignment TATGTCCGAGTATCTTTTGATACGAAACCTGATCTCTTGCTACACCTGATGACCAAGGAATGGCAACTGGAGCTTCCCAAACTTCTCATCTCCGTGCACGGAGGGCTGCAGAACTTTGAACTCCAGCCCAAACTCAAGCAAGTCTTCGGGAAGGGGCTCATCAAAGCAGCCATGACAACTGGAGCCTGGATCTTCACTGGAGGGGTCAACACAg aagcactcaagcacttaaaccattttctttcattttccttctttctatagTATGTACGAGTATCCTTTGACACAAAACCTGATCCCTTGCTACACCTGATGACAAAAGAATGGCAACTTGAACTTCCTAAGCTTCTCATTTCTGTACATGGAGGGCTCCAGAACTTTGAGCTTCAGCCTAAATTAAAACAAGTCTTTGGAAAGGGGCCCATTAAAGCGGCCATGACAACAGGAGCCTGGATCTTCACTGGAGAGGTCAACACAggtagaatcattgggataaaaaacacactaaaccctatcctgtcatgtagt Alignment from CESAR TATGTCCGAGTATCTTTTGATACGAAACCTGATCTCTTGCTACACCTGATGACCAAGGAATGGCAACTGGAGCTTCCCAAACTTCTCATCTCCGTGCACGGAGGGCTGCAGAACTTTGAACTCCAGCCCAAACTCAAGCAAGTCTTCGGGAAGGGGCTCATCAAAGCAGCCATGACAACTGGAGCCTGGATCTTCACTGGAGGGGTCAACACAg aagcactcaagcacttaaaccattttctttcattttccttctttctatagTATGTACGAGTATCCTTTGACACAAAACCTGATCCCTTGCTACACCTGATGACAAAAGAATGGCAACTTGAACTTCCTAAGCTTCTCATTTCTGTACATGGAGGGCTCCAGAACTTTGAGCTTCAGCCTAAATTAAAACAAGTCTTTGGAAAGGGGCCCATTAAAGCGGCCATGACAACAGGAGCCTGGATCTTCACTGGAGAGGTCAACACAggtagaatcattgggataaaaaacacactaaaccctatcctgtcatgtagt Alignment from Spaln_aa2Genome TATGTCCGAGTATCTTTTGATACGAAACCTGATCTCTTGCTACACCTGATGACCAAGGAATGGCAACTGGAGCTTCCCAAACTTCTCATCTCCGTGCACGGAGGGCTGCAGAACTTTGAACTCCAGCCCAAACTCAAGCAAGTCTTCGGGAAGGGGCTCATCAAAGCAGCCATGACAACTGGAGCCTGGATCTTCACTGGAGGGGTCAACACAG aagcactcaagcacttaaaccattttctttcattttccttctttctatagTATGTACGAGTATCCTTTGACACAAAACCTGATCCCTTGCTACACCTGATGACAAAAGAATGGCAACTTGAACTTCCTAAGCTTCTCATTTCTGTACATGGAGGGCTCCAGAACTTTGAGCTTCAGCCTAAATTAAAACAAGTCTTTGGAAAGGGGCCCATTAAAGCGGCCATGACAACAGGAGCCTGGATCTTCACTGGAGAGGTCAACACAGgtagaatcattgggataaaaaacacactaaaccctatcctgtcatgtagt Alignment from Spaln_nt2Genome TATGTCCGAGTATCTTTTGATACGAAACCTGATCTCTTGCTACACCTGATGACCAAGGAATGGCAACTGGAGCTTCCCAAACTTCTCATCTCCGTGCACGGAGGGCTGCAGAACTTTGAACTCCAGCCCAAACTCAAGCAAGTCTTCGGGAAGGGGCTCATCAAAGCAGCCATGACAACTGGAGCCTGGATCTTCACTGGAGGGGTCAACACAG aagcactcaagcacttaaaccattttctttcattttccttctttctatagTATGTACGAGTATCCTTTGACACAAAACCTGATCCCTTGCTACACCTGATGACAAAAGAATGGCAACTTGAACTTCCTAAGCTTCTCATTTCTGTACATGGAGGGCTCCAGAACTTTGAGCTTCAGCCTAAATTAAAACAAGTCTTTGGAAAGGGGCCCATTAAAGCGGCCATGACAACAGGAGCCTGGATCTTCACTGGAGAGGTCAACACAGgtagaatcattgggataaaaaacacactaaaccctatcctgtcatgtagt Alignment from Pairagon TATGTCCGAGTATCTTTTGATACGAAACCTGATCTCTTGCTACACCTGATGACCAAGGAATGGCAACTGGAGCTTCCCAAACTTCTCATCTCCGTGCACGGAGGGCTGCAGAACTTTGAACTCCAGCCCAAACTCAAGCAAGTCTTCGGGAAGGGGCTCATCAAAGCAGCCATGACAACTGGAGCCTGGATCTTCACTGGAGGGGTCAACACAG aagcactcaagcacttaaaccattttctttcattttccttctttctatagTATGTACGAGTATCCTTTGACACAAAACCTGATCCCTTGCTACACCTGATGACAAAAGAATGGCAACTTGAACTTCCTAAGCTTCTCATTTCTGTACATGGAGGGCTCCAGAACTTTGAGCTTCAGCCTAAATTAAAACAAGTCTTTGGAAAGGGGCCCATTAAAGCGGCCATGACAACAGGAGCCTGGATCTTCACTGGAGAGGTCAACACAGgtagaatcattgggataaaaaacacactaaaccctatcctgtcatgtagt Alignment from Exonerate_protein2genome TATGTCCGAGTATCTTTTGATACGAAACCTGATCTCTTGCTACACCTGATGACCAAGGAATGGCAACTGGAGCTTCCCAAACTTCTCATCTCCGTGCACGGAGGGCTGCAGAACTTTGAACTCCAGCCCAAACTCAAGCAAGTCTTCGGGAAGGGGCTCATCAAAGCAGCCATGACAACTGGAGCCTGGATCTTCACTGGAGGGGTCAACACAG aagcactcaagcacttaaaccattttctttcattttccttctttctatagTATGTACGAGTATCCTTTGACACAAAACCTGATCCCTTGCTACACCTGATGACAAAAGAATGGCAACTTGAACTTCCTAAGCTTCTCATTTCTGTACATGGAGGGCTCCAGAACTTTGAGCTTCAGCCTAAATTAAAACAAGTCTTTGGAAAGGGGCCCATTAAAGCGGCCATGACAACAGGAGCCTGGATCTTCACTGGAGAGGTCAACACAGgtagaatcattgggataaaaaacacactaaaccctatcctgtcatgtagt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TATGTCCGAGTATCTTTTGATACGAAACCTGATCTCTTGCTACACCTGATGACCAAGGAATGGCAACTGGAGCTTCCCAAACTTCTCATCTCCGTGCACGGAGGGCTGCAGAACTTTGAACTCCAGCCCAAACTCAAGCAAGTCTTCGGGAAGGGGCTCATCAAAGCAGCCATGACAACTGGAGCCTGGATCTTCACTGGAGGGGTCAACACAG aagcactcaagcacttaaaccattttctttcattttccttctttctatagTATGTACGAGTATCCTTTGACACAAAACCTGATCCCTTGCTACACCTGATGACAAAAGAATGGCAACTTGAACTTCCTAAGCTTCTCATTTCTGTACATGGAGGGCTCCAGAACTTTGAGCTTCAGCCTAAATTAAAACAAGTCTTTGGAAAGGGGCCCATTAAAGCGGCCATGACAACAGGAGCCTGGATCTTCACTGGAGAGGTCAACACAGgtagaatcattgggataaaaaacacactaaaccctatcctgtcatgtagt #### Trpm3_ID5048_8 --> 1 - 0 Original Alignment aCTTATCAATGAATCTTTGAGGGACCAGCTGTTGGTGACAATACAGAAGACCTTCACGTACACTCGAACCCAAGCTCAGCACCTGTTCATCATCCTCATGGAATGCATGAAGAAGAAGGAACTG gcaatgaggaacgacaattatcctagtatcactcactttacactttacagaCTTATTAATGAGTCTTTGAGGGACCAACTGTTGGTAACAATACAGAAGACCTTCACGTACACTCGAACCCAAGCTCAGCACCTGTTCATCATCGTCATGGAATGCATGAAGAAGAAAGAACTGgtgggccatatgtagcttagactttgctacaagcctcatgtatcaactat Alignment from CESAR aCTTATCAATGAATCTTTGAGGGACCAGCTGTTGGTGACAATACAGAAGACCTTCACGTACACTCGAACCCAAGCTCAGCACCTGTTCATCATCCTCATGGAATGCATGAAGAAGAAGGAACTG gcaatgaggaacgacaattatcctagtatcactcactttacactttacagaCTTATTAATGAGTCTTTGAGGGACCAACTGTTGGTAACAATACAGAAGACCTTCACGTACACTCGAACCCAAGCTCAGCACCTGTTCATCATCGTCATGGAATGCATGAAGAAGAAAGAACTGgtgggccatatgtagcttagactttgctacaagcctcatgtatcaactat Alignment from Spaln_aa2Genome ACTTATCAATGAATCTTTGAGGGACCAGCTGTTGGTGACAATACAGAAGACCTTCACGTACACTCGAACCCAAGCTCAGCACCTGTTCATCATCCTCATGGAATGCATGAAGAAGAAGGAACTG gcaatgaggaacgacaattatcctagtatcactcactttacactttacagACTTATTAATGAGTCTTTGAGGGACCAACTGTTGGTAACAATACAGAAGACCTTCACGTACACTCGAACCCAAGCTCAGCACCTGTTCATCATCGTCATGGAATGCATGAAGAAGAAAGAACTGgtgggccatatgtagcttagactttgctacaagcctcatgtatcaactat Alignment from Spaln_nt2Genome ACTTATCAATGAATCTTTGAGGGACCAGCTGTTGGTGACAATACAGAAGACCTTCACGTACACTCGAACCCAAGCTCAGCACCTGTTCATCATCCTCATGGAATGCATGAAGAAGAAGGAACTG gcaatgaggaacgacaattatcctagtatcactcactttacactttacagACTTATTAATGAGTCTTTGAGGGACCAACTGTTGGTAACAATACAGAAGACCTTCACGTACACTCGAACCCAAGCTCAGCACCTGTTCATCATCGTCATGGAATGCATGAAGAAGAAAGAACTGgtgggccatatgtagcttagactttgctacaagcctcatgtatcaactat Alignment from Pairagon ACTTATCAATGAATCTTTGAGGGACCAGCTGTTGGTGACAATACAGAAGACCTTCACGTACACTCGAACCCAAGCTCAGCACCTGTTCATCATCCTCATGGAATGCATGAAGAAGAAGGAACTG gcaatgaggaacgacaattatcctagtatcactcactttacactttacagACTTATTAATGAGTCTTTGAGGGACCAACTGTTGGTAACAATACAGAAGACCTTCACGTACACTCGAACCCAAGCTCAGCACCTGTTCATCATCGTCATGGAATGCATGAAGAAGAAAGAACTGgtgggccatatgtagcttagactttgctacaagcctcatgtatcaactat Alignment from Exonerate_protein2genome ACTTATCAATGAATCTTTGAGGGACCAGCTGTTGGTGACAATACAGAAGACCTTCACGTACACTCGAACCCAAGCTCAGCACCTGTTCATCATCCTCATGGAATGCATGAAGAAGAAGGAACTG gcaatgaggaacgacaattatcctagtatcactcactttacactttacagACTTATTAATGAGTCTTTGAGGGACCAACTGTTGGTAACAATACAGAAGACCTTCACGTACACTCGAACCCAAGCTCAGCACCTGTTCATCATCGTCATGGAATGCATGAAGAAGAAAGAACTGgtgggccatatgtagcttagactttgctacaagcctcatgtatcaactat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ACTTATCAATGAATCTTTGAGGGACCAGCTGTTGGTGACAATACAGAAGACCTTCACGTACACTCGAACCCAAGCTCAGCACCTGTTCATCATCCTCATGGAATGCATGAAGAAGAAGGAACTG gcaatgaggaacgacaattatcctagtatcactcactttacactttacagACTTATTAATGAGTCTTTGAGGGACCAACTGTTGGTAACAATACAGAAGACCTTCACGTACACTCGAACCCAAGCTCAGCACCTGTTCATCATCGTCATGGAATGCATGAAGAAGAAAGAACTGgtgggccatatgtagcttagactttgctacaagcctcatgtatcaactat #### Trpm3_ID5054_10 --> 2 - 0 Original Alignment gtGCCAATGCATCCGCCCCAGACCAACTGAGCTTAGCTTTAGCCTGGAACAGAGTTGACATCGCTCGCAGCCAGATCTTTATTTACGGGCAGCAGTGGCCG ttttcaatattttgtgcttatcttttttgtaacgttttgtctccttccagggGCTAATCCATCTGCCCCCGACCAGCTAAGCTTGGCTTTAGCTTGGAACAGAGTTGACATTGCTCGAAGCCAGATCTTTATTTACGGGCAGCAGTGGCCAgtgagtgactaatttaaggtgttgacaaggttatcaaagcctccctgttc Alignment from CESAR gtGCCAATGCATCCGCCCCAGACCAACTGAGCTTAGCTTTAGCCTGGAACAGAGTTGACATCGCTCGCAGCCAGATCTTTATTTACGGGCAGCAGTGGCCG ttttcaatattttgtgcttatcttttttgtaacgttttgtctccttccagggGCTAATCCATCTGCCCCCGACCAGCTAAGCTTGGCTTTAGCTTGGAACAGAGTTGACATTGCTCGAAGCCAGATCTTTATTTACGGGCAGCAGTGGCCAgtgagtgactaatttaaggtgttgacaaggttatcaaagcctccctgttc Alignment from Spaln_aa2Genome GTGCCAATGCATCCGCCCCAGACCAACTGAGCTTAGCTTTAGCCTGGAACAGAGTTGACATCGCTCGCAGCCAGATCTTTATTTACGGGCAGCAGTGGCCG ttttcaatattttgtgcttatcttttttgtaacgttttgtctccttccagGGGCTAATCCATCTGCCCCCGACCAGCTAAGCTTGGCTTTAGCTTGGAACAGAGTTGACATTGCTCGAAGCCAGATCTTTATTTACGGGCAGCAGTGGCCAgtgagtgactaatttaaggtgttgacaaggttatcaaagcctccctgttc Alignment from Spaln_nt2Genome GTGCCAATGCATCCGCCCCAGACCAACTGAGCTTAGCTTTAGCCTGGAACAGAGTTGACATCGCTCGCAGCCAGATCTTTATTTACGGGCAGCAGTGGCCG ttttcaatattttgtgcttatcttttttgtaacgttttgtctccttccagGGGCTAATCCATCTGCCCCCGACCAGCTAAGCTTGGCTTTAGCTTGGAACAGAGTTGACATTGCTCGAAGCCAGATCTTTATTTACGGGCAGCAGTGGCCAgtgagtgactaatttaaggtgttgacaaggttatcaaagcctccctgttc Alignment from Pairagon GTGCCAATGCATCCGCCCCAGACCAACTGAGCTTAGCTTTAGCCTGGAACAGAGTTGACATCGCTCGCAGCCAGATCTTTATTTACGGGCAGCAGTGGCCG ttttcaatattttgtgcttatcttttttgtaacgttttgtctccttccagGGGCTAATCCATCTGCCCCCGACCAGCTAAGCTTGGCTTTAGCTTGGAACAGAGTTGACATTGCTCGAAGCCAGATCTTTATTTACGGGCAGCAGTGGCCAgtgagtgactaatttaaggtgttgacaaggttatcaaagcctccctgttc Alignment from Exonerate_protein2genome GTGCCAATGCATCCGCCCCAGACCAACTGAGCTTAGCTTTAGCCTGGAACAGAGTTGACATCGCTCGCAGCCAGATCTTTATTTACGGGCAGCAGTGGCCG ttttcaatattttgtgcttatcttttttgtaacgttttgtctccttccagGGGCTAATCCATCTGCCCCCGACCAGCTAAGCTTGGCTTTAGCTTGGAACAGAGTTGACATTGCTCGAAGCCAGATCTTTATTTACGGGCAGCAGTGGCCAgtgagtgactaatttaaggtgttgacaaggttatcaaagcctccctgttc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGCCAATGCATCCGCCCCAGACCAACTGAGCTTAGCTTTAGCCTGGAACAGAGTTGACATCGCTCGCAGCCAGATCTTTATTTACGGGCAGCAGTGGCCG ttttcaatattttgtgcttatcttttttgtaacgttttgtctccttccagGGGCTAATCCATCTGCCCCCGACCAGCTAAGCTTGGCTTTAGCTTGGAACAGAGTTGACATTGCTCGAAGCCAGATCTTTATTTACGGGCAGCAGTGGCCAgtgagtgactaatttaaggtgttgacaaggttatcaaagcctccctgttc #### Trpm3_ID5078_22 --> 2 - 2 Original Alignment ctCCCTGTGGACAGAATGAGACCCGAGAGGATGGCAAGACAATCCAGCTGCCCCCATGCAAGACAGGAGCATGGATTGTCCCGGCCATCATGGCCTGCTACCTCTTGGTGGCGAACATCCTTCTGGTCAACCTCCTTATTGCCGTCTTCaa acagattaatcttactacccaatcattcaattcttccctcttctctgcagctCCCTGTGGACAGAATGAAACCCGGGAGGATGGTAGGACAATTCAACTGCCTTCGTGCAAAACAGGGGCATGGATTGTGGCTGCCATTATT------TACCTCTTAGTGGCAAACATTCTTCTTGTCAACCTTGTAATTGCCGTCTTCaagtgagtgttatttggggttatgtgatgcagtcattgcaatcatctcgtta Alignment from CESAR ctCCCTGTGGACAGAATGAGACCCGAGAGGATGGCAAGACAATCCAGCTGCCCCCATGCAAGACAGGAGCATGGATTGTCCCGGCCATCATGGCCTGCTACCTCTTGGTGGCGAACATCCTTCTGGTCAACCTCCTTATTGCCGTCTTCaa acagattaatcttactacccaatcattcaattcttccctcttctctgcagctCCCTGTGGACAGAATGAAACCCGGGAGGATGGTAGGACAATTCAACTGCCTTCGTGCAAAACAGGGGCATGGATTGTGGCTGCCATTATT------TACCTCTTAGTGGCAAACATTCTTCTTGTCAACCTTGTAATTGCCGTCTTCaagtgagtgttatttggggttatgtgatgcagtcattgcaatcatctcgtta Alignment from Spaln_aa2Genome CTCCCTGTGGACAGAATGAGACCCGAGAGGATGGCAAGACAATCCAGCTGCCCCCATGCAAGACAGGAGCATGGATTGTCCCGGCCATCATGGCCTGCTACCTCTTGGTGGCGAACATCCTTCTGGTCAACCTCCTTATTGCCGTCTTCAA acagattaatcttactacccaatcattcaattcttccctcttctctgcagCTCCCTGTGGACAGAATGAAACCCGGGAGGATGGTAGGACAATTCAACTGCCTTCGTGCAAAACAGGGGCATGGATTGTGGCTGCCATTATT------TACCTCTTAGTGGCAAACATTCTTCTTGTCAACCTTGTAATTGCCGTCTTCAAgtgagtgttatttggggttatgtgatgcagtcattgcaatcatctcgtta Alignment from Spaln_nt2Genome CTCCCTGTGGACAGAATGAGACCCGAGAGGATGGCAAGACAATCCAGCTGCCCCCATGCAAGACAGGAGCATGGATTGTCCCGGCCATCATGGCCTGCTACCTCTTGGTGGCGAACATCCTTCTGGTCAACCTCCTTATTGCCGTCTTCAA acagattaatcttactacccaatcattcaattcttccctcttctctgcagCTCCCTGTGGACAGAATGAAACCCGGGAGGATGGTAGGACAATTCAACTGCCTTCGTGCAAAACAGGGGCATGGATTGTGGCTGCCATTAT------TTACCTCTTAGTGGCAAACATTCTTCTTGTCAACCTTGTAATTGCCGTCTTCAAgtgagtgttatttggggttatgtgatgcagtcattgcaatcatctcgtta Alignment from Pairagon CTCCCTGTGGACAGAATGAGACCCGAGAGGATGGCAAGACAATCCAGCTGCCCCCATGCAAGACAGGAGCATGGATTGTCCCGGCCATCATGGCCTGCTACCTCTTGGTGGCGAACATCCTTCTGGTCAACCTCCTTATTGCCGTCTTCAA acagattaatcttactacccaatcattcaattcttccctcttctctgcagCTCCCTGTGGACAGAATGAAACCCGGGAGGATGGTAGGACAATTCAACTGCCTTCGTGCAAAACAGGGGCATGGATTGTGGCTGCCATTAT------TTACCTCTTAGTGGCAAACATTCTTCTTGTCAACCTTGTAATTGCCGTCTTCAAgtgagtgttatttggggttatgtgatgcagtcattgcaatcatctcgtta Alignment from Exonerate_protein2genome CTCCCTGTGGACAGAATGAGACCCGAGAGGATGGCAAGACAATCCAGCTGCCCCCATGCAAGACAGGAGCATGGATTGTCCCGGCCATCATGGCCTGCTACCTCTTGGTGGCGAACATCCTTCTGGTCAACCTCCTTATTGCCGTCTTCAA acagattaatcttactacccaatcattcaattcttccctcttctctgcagCTCCCTGTGGACAGAATGAAACCCGGGAGGATGGTAGGACAATTCAACTGCCTTCGTGCAAAACAGGGGCATGGATTGTGGCTGCCATTATT------TACCTCTTAGTGGCAAACATTCTTCTTGTCAACCTTGTAATTGCCGTCTTCAAgtgagtgttatttggggttatgtgatgcagtcattgcaatcatctcgtta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTCCCTGTGGACAGAATGAGACCCGAGAGGATGGCAAGACAATCCAGCTGCCCCCATGCAAGACAGGAGCATGGATTGTCCCGGCCATCATGGCCTGCTACCTCTTGGTGGCGAACATCCTTCTGGTCAACCTCCTTATTGCCGTCTTCAA acagattaatcttactacccaatcattcaattcttccctcttctctgcagCTCCCTGTGGACAGAATGAAACCCGGGAGGATGGTAGGACAATTCAACTGCCTTCGTGCAAAACAGGGGCATGGATTGTGGCTGCCATTATT------TACCTCTTAGTGGCAAACATTCTTCTTGTCAACCTTGTAATTGCCGTCTTCAAgtgagtgttatttggggttatgtgatgcagtcattgcaatcatctcgtta #### Trpm6_ID4464_3 --> 1 - 2 Original Alignment aTGCACTCCAGGCTGCCAAATCTGCCACAATTTAGTCag ttgagataccggggacacaaaccaacatgcttgggattctttcttcgcagaTGCTCTCCAGGTTGCCAAATCTGCCACAACTTGGTCaggtaagcaccttgactctaatgtcctgatacattgatgttgcagttagatg Alignment from CESAR aTGCACTCCAGGCTGCCAAATCTGCCACAATTTAGTCag ttgagataccggggacacaaaccaacatgcttgggattctttcttcgcagaTGCTCTCCAGGTTGCCAAATCTGCCACAACTTGGTCaggtaagcaccttgactctaatgtcctgatacattgatgttgcagttagatg Alignment from Spaln_aa2Genome ATGCACTCCAGGCTGCCAAATCTGCCACAATTTAGTCAG ttgagataccggggacacaaaccaacatgcttgggattctttcttcgcagATGCTCTCCAGGTTGCCAAATCTGCCACAACTTGGTCAGgtaagcaccttgactctaatgtcctgatacattgatgttgcagttagatg Alignment from Spaln_nt2Genome ATGCACTCCAGGCTGCCAAATCTGCCACAATTTAGTCAG ttgagataccggggacacaaaccaacatgcttgggattctttcttcgcagATGCTCTCCAGGTTGCCAAATCTGCCACAACTTGGTCAGgtaagcaccttgactctaatgtcctgatacattgatgttgcagttagatg Alignment from Pairagon ATGCACTCCAGGCTGCCAAATCTGCCACAATTTAGTCAG ttgagataccggggacacaaaccaacatgcttgggattctttcttcgcagATGCTCTCCAGGTTGCCAAATCTGCCACAACTTGGTCAGgtaagcaccttgactctaatgtcctgatacattgatgttgcagttagatg Alignment from Exonerate_protein2genome ATGCACTCCAGGCTGCCAAATCTGCCACAATTTAGTCAG ttgagataccggggacacaaaccaacatgcttgggattctttcttcgcagATGCTCTCCAGGTTGCCAAATCTGCCACAACTTGGTCAGgtaagcaccttgactctaatgtcctgatacattgatgttgcagttagatg Alignment from Exonerate_coding2genome ttgagataccggggacacaaaccaacatgcttgggattctttcttcgcagatgctctccaggttgccaaatctgccacaacttggtcaggtaagcaccttgactctaatgtcctgatacattgatgttgcagttagatg Alignment from GeneWise ttgagataccggggacacaaaccaacatgcttgggattctttcttcgcagatgctctccaggttgccaaatctgccacaacttggtcaggtaagcaccttgactctaatgtcctgatacattgatgttgcagttagatg #### Trpm6_ID4465_4 --> 1 - 0 Original Alignment gTGTTACTGTGGCCGGCTGATTGAAGAACACCATGGGCTGGATCGTGCCTGGAACCTCTCAGTCACTGAGGGCCATGGGGATGAGCAGTGGTCTGTGGAGAAGCACACAGTGAAAAGCCCTACAGATACCTTCGGCACCATTAATTTCCAAGATGGAGAACATATCCACCACTCCAAG tgggtttaatatgaagtttcctcctgaattcttcttcttcctcccccaaggTGCTACTGTGGACGGCTCCTGGAAGAACATCGTGGGCTGGATCGTGCCTGGAACCTCTCTGTCACCGAGGGCCATGGAGATGAGCAGTGGTCTGTAGAGAAACACACAGTGAAAAGTCCTACTGATAGCTTTGGAACCATTAACTTCCCAGATACAGATCACACACACCACTCTAAGgtaagggggctgatcagctctggagttatgaatacaatcaaaccattggc Alignment from CESAR gTGTTACTGTGGCCGGCTGATTGAAGAACACCATGGGCTGGATCGTGCCTGGAACCTCTCAGTCACTGAGGGCCATGGGGATGAGCAGTGGTCTGTGGAGAAGCACACAGTGAAAAGCCCTACAGATACCTTCGGCACCATTAATTTCCAAGATGGAGAACATATCCACCACTCCAAG tgggtttaatatgaagtttcctcctgaattcttcttcttcctcccccaaggTGCTACTGTGGACGGCTCCTGGAAGAACATCGTGGGCTGGATCGTGCCTGGAACCTCTCTGTCACCGAGGGCCATGGAGATGAGCAGTGGTCTGTAGAGAAACACACAGTGAAAAGTCCTACTGATAGCTTTGGAACCATTAACTTCCCAGATACAGATCACACACACCACTCTAAGgtaagggggctgatcagctctggagttatgaatacaatcaaaccattggc Alignment from Spaln_aa2Genome GTGTTACTGTGGCCGGCTGATTGAAGAACACCATGGGCTGGATCGTGCCTGGAACCTCTCAGTCACTGAGGGCCATGGGGATGAGCAGTGGTCTGTGGAGAAGCACACAGTGAAAAGCCCTACAGATACCTTCGGCACCATTAATTTCCAAGATGGAGAACATATCCACCACTCCAAG tgggtttaatatgaagtttcctcctgaattcttcttcttcctcccccaagGTGCTACTGTGGACGGCTCCTGGAAGAACATCGTGGGCTGGATCGTGCCTGGAACCTCTCTGTCACCGAGGGCCATGGAGATGAGCAGTGGTCTGTAGAGAAACACACAGTGAAAAGTCCTACTGATAGCTTTGGAACCATTAACTTCCCAGATACAGATCACACACACCACTCTAAGgtaagggggctgatcagctctggagttatgaatacaatcaaaccattggc Alignment from Spaln_nt2Genome GTGTTACTGTGGCCGGCTGATTGAAGAACACCATGGGCTGGATCGTGCCTGGAACCTCTCAGTCACTGAGGGCCATGGGGATGAGCAGTGGTCTGTGGAGAAGCACACAGTGAAAAGCCCTACAGATACCTTCGGCACCATTAATTTCCAAGATGGAGAACATATCCACCACTCCAAG tgggtttaatatgaagtttcctcctgaattcttcttcttcctcccccaagGTGCTACTGTGGACGGCTCCTGGAAGAACATCGTGGGCTGGATCGTGCCTGGAACCTCTCTGTCACCGAGGGCCATGGAGATGAGCAGTGGTCTGTAGAGAAACACACAGTGAAAAGTCCTACTGATAGCTTTGGAACCATTAACTTCCCAGATACAGATCACACACACCACTCTAAGgtaagggggctgatcagctctggagttatgaatacaatcaaaccattggc Alignment from Pairagon GTGTTACTGTGGCCGGCTGATTGAAGAACACCATGGGCTGGATCGTGCCTGGAACCTCTCAGTCACTGAGGGCCATGGGGATGAGCAGTGGTCTGTGGAGAAGCACACAGTGAAAAGCCCTACAGATACCTTCGGCACCATTAATTTCCAAGATGGAGAACATATCCACCACTCCAAG tgggtttaatatgaagtttcctcctgaattcttcttcttcctcccccaagGTGCTACTGTGGACGGCTCCTGGAAGAACATCGTGGGCTGGATCGTGCCTGGAACCTCTCTGTCACCGAGGGCCATGGAGATGAGCAGTGGTCTGTAGAGAAACACACAGTGAAAAGTCCTACTGATAGCTTTGGAACCATTAACTTCCCAGATACAGATCACACACACCACTCTAAGgtaagggggctgatcagctctggagttatgaatacaatcaaaccattggc Alignment from Exonerate_protein2genome GTGTTACTGTGGCCGGCTGATTGAAGAACACCATGGGCTGGATCGTGCCTGGAACCTCTCAGTCACTGAGGGCCATGGGGATGAGCAGTGGTCTGTGGAGAAGCACACAGTGAAAAGCCCTACAGATACCTTCGGCACCATTAATTTCCAAGATGGAGAACATATCCACCACTCCAAG tgggtttaatatgaagtttcctcctgaattcttcttcttcctcccccaagGTGCTACTGTGGACGGCTCCTGGAAGAACATCGTGGGCTGGATCGTGCCTGGAACCTCTCTGTCACCGAGGGCCATGGAGATGAGCAGTGGTCTGTAGAGAAACACACAGTGAAAAGTCCTACTGATAGCTTTGGAACCATTAACTTCCCAGATACAGATCACACACACCACTCTAAGgtaagggggctgatcagctctggagttatgaatacaatcaaaccattggc Alignment from Exonerate_coding2genome tgggtttaatatgaagtttcctcctgaattcttcttcttcctcccccaaggtgctactgtggacggctcctggaagaacatcgtgggctggatcgtgcctggaacctctctgtcaccgagggccatggagatgagcagtggtctgtagagaaacacacagtgaaaagtcctactgatagctttggaaccattaacttcccagatacagatcacacacaccactctaaggtaagggggctgatcagctctggagttatgaatacaatcaaaccattggc Alignment from GeneWise AGGTGTTACTGTGGCCGGCTGATTGAAGAACACCATGGGCTGGATCGTGCCTGGAACCTCTCAGTCACTGAGGGCCATGGGGATGAGCAGTGGTCTGTGGAGAAGCACACAGTGAAAAGCCCTACAGATACCTTCGGCACCATTAATTTCCAAGATGGAGAACATATCCACCACTCCAAG tgggtttaatatgaagtttcctcctgaattcttcttcttcctcccccaAGGTGCTACTGTGGACGGCTCCTGGAAGAACATCGTGGGCTGGATCGTGCCTGGAACCTCTCTGTCACCGAGGGCCATGGAGATGAGCAGTGGTCTGTAGAGAAACACACAGTGAAAAGTCCTACTGATAGCTTTGGAACCATTAACTTCCCAGATACAGATCACACACACCACTCTAAGgtaagggggctgatcagctctggagttatgaatacaatcaaaccattggc #### Trpm6_ID4472_10 --> 0 - 1 Original Alignment ATCACCATATTTGATGCTGATTCTGAAGAGCACCAAGATCTTGATTTGGCCATCCTCACGGCTCTACTGAAGg taatgtcaaatcaatagtgctgtgcacctcaccaagatttgtctccacagATTACTATATTTGATGCTGATTCAAAAGAGCACCAGGGTCTTGATTTAGCAATCCTCACTGCCCTTCTCAAGggttagcactgttcttaacttctccctctccttacttctgggtttgaattt Alignment from CESAR ATCACCATATTTGATGCTGATTCTGAAGAGCACCAAGATCTTGATTTGGCCATCCTCACGGCTCTACTGAAGg taatgtcaaatcaatagtgctgtgcacctcaccaagatttgtctccacagATTACTATATTTGATGCTGATTCAAAAGAGCACCAGGGTCTTGATTTAGCAATCCTCACTGCCCTTCTCAAGggttagcactgttcttaacttctccctctccttacttctgggtttgaattt Alignment from Spaln_aa2Genome ATCACCATATTTGATGCTGATTCTGAAGAGCACCAAGATCTTGATTTGGCCATCCTCACGGCTCTACTGAAGG taatgtcaaatcaatagtgctgtgcacctcaccaagatttgtctccacagATTACTATATTTGATGCTGATTCAAAAGAGCACCAGGGTCTTGATTTAGCAATCCTCACTGCCCTTCTCAAGGgttagcactgttcttaacttctccctctccttacttctgggtttgaattt Alignment from Spaln_nt2Genome ATCACCATATTTGATGCTGATTCTGAAGAGCACCAAGATCTTGATTTGGCCATCCTCACGGCTCTACTGAAGG taatgtcaaatcaatagtgctgtgcacctcaccaagatttgtctccacagATTACTATATTTGATGCTGATTCAAAAGAGCACCAGGGTCTTGATTTAGCAATCCTCACTGCCCTTCTCAAGGgttagcactgttcttaacttctccctctccttacttctgggtttgaattt Alignment from Pairagon ATCACCATATTTGATGCTGATTCTGAAGAGCACCAAGATCTTGATTTGGCCATCCTCACGGCTCTACTGAAGG taatgtcaaatcaatagtgctgtgcacctcaccaagatttgtctccacagATTACTATATTTGATGCTGATTCAAAAGAGCACCAGGGTCTTGATTTAGCAATCCTCACTGCCCTTCTCAAGGgttagcactgttcttaacttctccctctccttacttctgggtttgaattt Alignment from Exonerate_protein2genome ATCACCATATTTGATGCTGATTCTGAAGAGCACCAAGATCTTGATTTGGCCATCCTCACGGCTCTACTGAAGG taatgtcaaatcaatagtgctgtgcacctcaccaagatttgtctccacagATTACTATATTTGATGCTGATTCAAAAGAGCACCAGGGTCTTGATTTAGCAATCCTCACTGCCCTTCTCAAGGgttagcactgttcttaacttctccctctccttacttctgggtttgaattt Alignment from Exonerate_coding2genome taatgtcaaatcaatagtgctgtgcacctcaccaagatttgtctccacagattactatatttgatgctgattcaaaagagcaccagggtcttgatttagcaatcctcactgcccttctcaagggttagcactgttcttaacttctccctctccttacttctgggtttgaattt Alignment from GeneWise ATCACCATATTTGATGCTGATTCTGAAGAGCACCAAGATCTTGATTTGGCCATCCTCACGGCTCTACTGAAGG taatgtcaaatcaatagtgctgtgcacctcaccaagatttgtctccacagATTACTATATTTGATGCTGATTCAAAAGAGCACCAGGGTCTTGATTTAGCAATCCTCACTGCCCTTCTCAAGGgttagcactgttcttaacttctccctctccttacttctgggtttgaattt #### Trpm6_ID4484_21 --> 0 - 0 Original Alignment ATCTGCATTTCAGAACCAAGCAAGTTTAAGCAGAAGGTGAAGATGTGGCTCAGTGAGTACTGGAACCTCATGGAAACTGTGGCTATTGGCCTGTTTGCTGTTGGCTTTGGCCTACGGTGGGGGCATCCACCTTTGCAAACTGCAGGGAGACTCATCTACTGCATAGACATCATATTTTGGTTTTCTCGGCTCATGGACTTCTTTGCTGTGAATCAACATGCAGGTCCATATGTGACCATGATTGCCAAAATG aacacatggcagtgtgagacccttctagtgttctgctctcgtggtaacagTTCTGCATTACAGAACCAAGCAAGTTTAAACAGAAGGTGAAAATGTGGCTGAGTGAGTACTGGAACCTGATGGGGACTGTCGCCATAGGATTGTTTGCAGTTGGCTTTGGCCTACGATGGGGGCACCCTCCTTTGCAAACTGATGGCCGGCTTATTTACTGCATAGAAGTTATACTTTGGTTCTCACGACTGATGGACTTCTTTGCTGTCAATCAACATGCAGGTCCCTATGTCACCATGATTGCCAAAACTgtagggaatccttttaactacttaccaaagggtaaatcaccagagtctag Alignment from CESAR ATCTGCATTTCAGAACCAAGCAAGTTTAAGCAGAAGGTGAAGATGTGGCTCAGTGAGTACTGGAACCTCATGGAAACTGTGGCTATTGGCCTGTTTGCTGTTGGCTTTGGCCTACGGTGGGGGCATCCACCTTTGCAAACTGCAGGGAGACTCATCTACTGCATAGACATCATATTTTGGTTTTCTCGGCTCATGGACTTCTTTGCTGTGAATCAACATGCAGGTCCATATGTGACCATGATTGCCAAAATG aacacatggcagtgtgagacccttctagtgttctgctctcgtggtaacagTTCTGCATTACAGAACCAAGCAAGTTTAAACAGAAGGTGAAAATGTGGCTGAGTGAGTACTGGAACCTGATGGGGACTGTCGCCATAGGATTGTTTGCAGTTGGCTTTGGCCTACGATGGGGGCACCCTCCTTTGCAAACTGATGGCCGGCTTATTTACTGCATAGAAGTTATACTTTGGTTCTCACGACTGATGGACTTCTTTGCTGTCAATCAACATGCAGGTCCCTATGTCACCATGATTGCCAAAACTgtagggaatccttttaactacttaccaaagggtaaatcaccagagtctag Alignment from Spaln_aa2Genome ATCTGCATTTCAGAACCAAGCAAGTTTAAGCAGAAGGTGAAGATGTGGCTCAGTGAGTACTGGAACCTCATGGAAACTGTGGCTATTGGCCTGTTTGCTGTTGGCTTTGGCCTACGGTGGGGGCATCCACCTTTGCAAACTGCAGGGAGACTCATCTACTGCATAGACATCATATTTTGGTTTTCTCGGCTCATGGACTTCTTTGCTGTGAATCAACATGCAGGTCCATATGTGACCATGATTGCCAAAATG aacacatggcagtgtgagacccttctagtgttctgctctcgtggtaacagTTCTGCATTACAGAACCAAGCAAGTTTAAACAGAAGGTGAAAATGTGGCTGAGTGAGTACTGGAACCTGATGGGGACTGTCGCCATAGGATTGTTTGCAGTTGGCTTTGGCCTACGATGGGGGCACCCTCCTTTGCAAACTGATGGCCGGCTTATTTACTGCATAGAAGTTATACTTTGGTTCTCACGACTGATGGACTTCTTTGCTGTCAATCAACATGCAGGTCCCTATGTCACCATGATTGCCAAAACTgtagggaatccttttaactacttaccaaagggtaaatcaccagagtctag Alignment from Spaln_nt2Genome ATCTGCATTTCAGAACCAAGCAAGTTTAAGCAGAAGGTGAAGATGTGGCTCAGTGAGTACTGGAACCTCATGGAAACTGTGGCTATTGGCCTGTTTGCTGTTGGCTTTGGCCTACGGTGGGGGCATCCACCTTTGCAAACTGCAGGGAGACTCATCTACTGCATAGACATCATATTTTGGTTTTCTCGGCTCATGGACTTCTTTGCTGTGAATCAACATGCAGGTCCATATGTGACCATGATTGCCAAAATG aacacatggcagtgtgagacccttctagtgttctgctctcgtggtaacagTTCTGCATTACAGAACCAAGCAAGTTTAAACAGAAGGTGAAAATGTGGCTGAGTGAGTACTGGAACCTGATGGGGACTGTCGCCATAGGATTGTTTGCAGTTGGCTTTGGCCTACGATGGGGGCACCCTCCTTTGCAAACTGATGGCCGGCTTATTTACTGCATAGAAGTTATACTTTGGTTCTCACGACTGATGGACTTCTTTGCTGTCAATCAACATGCAGGTCCCTATGTCACCATGATTGCCAAAACTgtagggaatccttttaactacttaccaaagggtaaatcaccagagtctag Alignment from Pairagon ATCTGCATTTCAGAACCAAGCAAGTTTAAGCAGAAGGTGAAGATGTGGCTCAGTGAGTACTGGAACCTCATGGAAACTGTGGCTATTGGCCTGTTTGCTGTTGGCTTTGGCCTACGGTGGGGGCATCCACCTTTGCAAACTGCAGGGAGACTCATCTACTGCATAGACATCATATTTTGGTTTTCTCGGCTCATGGACTTCTTTGCTGTGAATCAACATGCAGGTCCATATGTGACCATGATTGCCAAAATG aacacatggcagtgtgagacccttctagtgttctgctctcgtggtaacagTTCTGCATTACAGAACCAAGCAAGTTTAAACAGAAGGTGAAAATGTGGCTGAGTGAGTACTGGAACCTGATGGGGACTGTCGCCATAGGATTGTTTGCAGTTGGCTTTGGCCTACGATGGGGGCACCCTCCTTTGCAAACTGATGGCCGGCTTATTTACTGCATAGAAGTTATACTTTGGTTCTCACGACTGATGGACTTCTTTGCTGTCAATCAACATGCAGGTCCCTATGTCACCATGATTGCCAAAACTgtagggaatccttttaactacttaccaaagggtaaatcaccagagtctag Alignment from Exonerate_protein2genome ATCTGCATTTCAGAACCAAGCAAGTTTAAGCAGAAGGTGAAGATGTGGCTCAGTGAGTACTGGAACCTCATGGAAACTGTGGCTATTGGCCTGTTTGCTGTTGGCTTTGGCCTACGGTGGGGGCATCCACCTTTGCAAACTGCAGGGAGACTCATCTACTGCATAGACATCATATTTTGGTTTTCTCGGCTCATGGACTTCTTTGCTGTGAATCAACATGCAGGTCCATATGTGACCATGATTGCCAAAATG aacacatggcagtgtgagacccttctagtgttctgctctcgtggtaacagTTCTGCATTACAGAACCAAGCAAGTTTAAACAGAAGGTGAAAATGTGGCTGAGTGAGTACTGGAACCTGATGGGGACTGTCGCCATAGGATTGTTTGCAGTTGGCTTTGGCCTACGATGGGGGCACCCTCCTTTGCAAACTGATGGCCGGCTTATTTACTGCATAGAAGTTATACTTTGGTTCTCACGACTGATGGACTTCTTTGCTGTCAATCAACATGCAGGTCCCTATGTCACCATGATTGCCAAAACTgtagggaatccttttaactacttaccaaagggtaaatcaccagagtctag Alignment from Exonerate_coding2genome ATCTGCATTTCAGAACCAAGCAAGTTTAAGCAGAAGGTGAAGATGTGGCTCAGTGAGTACTGGAACCTCATGGAAACTGTGGCTATTGGCCTGTTTGCTGTTGGCTTTGGCCTACGGTGGGGGCATCCACCTTTGCAAACTGCAGGGAGACTCATCTACTGCATAGACATCATATTTTGGTTTTCTCGGCTCATGGACTTCTTTGCTGTGAATCAACATGCAGGTCCATATGTGACCATGATTGCCAAAATG aacacatggcagtgtgagacccttctagtgttctgctctcgtggtaacagTTCTGCATTACAGAACCAAGCAAGTTTAAACAGAAGGTGAAAATGTGGCTGAGTGAGTACTGGAACCTGATGGGGACTGTCGCCATAGGATTGTTTGCAGTTGGCTTTGGCCTACGATGGGGGCACCCTCCTTTGCAAACTGATGGCCGGCTTATTTACTGCATAGAAGTTATACTTTGGTTCTCACGACTGATGGACTTCTTTGCTGTCAATCAACATGCAGGTCCCTATGTCACCATGATTGCCAAAACTgtagggaatccttttaactacttaccaaagggtaaatcaccagagtctag Alignment from GeneWise ATCTGCATTTCAGAACCAAGCAAGTTTAAGCAGAAGGTGAAGATGTGGCTCAGTGAGTACTGGAACCTCATGGAAACTGTGGCTATTGGCCTGTTTGCTGTTGGCTTTGGCCTACGGTGGGGGCATCCACCTTTGCAAACTGCAGGGAGACTCATCTACTGCATAGACATCATATTTTGGTTTTCTCGGCTCATGGACTTCTTTGCTGTGAATCAACATGCAGGTCCATATGTGACCATGATTGCCAAAATG aacacatggcagtgtgagacccttctagtgttctgctctcgtggtaacagTTCTGCATTACAGAACCAAGCAAGTTTAAACAGAAGGTGAAAATGTGGCTGAGTGAGTACTGGAACCTGATGGGGACTGTCGCCATAGGATTGTTTGCAGTTGGCTTTGGCCTACGATGGGGGCACCCTCCTTTGCAAACTGATGGCCGGCTTATTTACTGCATAGAAGTTATACTTTGGTTCTCACGACTGATGGACTTCTTTGCTGTCAATCAACATGCAGGTCCCTATGTCACCATGATTGCCAAAACTgtagggaatccttttaactacttaccaaagggtaaatcaccagagtctag #### Trpm6_ID4488_25 --> 2 - 2 Original Alignment agCTCTATCTCACTAAGGATGACTTGAAAAAGCTTCATGATTTTGAAGAGCAGTGTGTGGAAAAATATTTCCACGAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAag aacgtttagccagtggaattgagaaatctgatatttttgttatttttcagaaCTATACCTCACACGGGATGACTTACAAAAGTTT------------CAGCAATGTGTGGGAGAGTTTTTCCACAAGAAAACAGAAGGTCTAAACTGTAGTTTTGAGGAACAGATTCGAATGACATCAGATcagtgggatacacaatcatatatcaaattcctaaagttgcgctacaaatgca Alignment from CESAR agCTCTATCTCACTAAGGATGACTTGAAAAAGCTTCATGATTTTGAAGAGCAGTGTGTGGAAAAATATTTCCACGAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAag aacgtttagccagtggaattgagaaatctgatatttttgttatttttcagaaCTATACCTCACACGGGATGACTTACAAAAGTTTCAG------------CAATGTGTGGGAGAGTTTTTCCACAAGAAAACAGAAGGTCTAAACTGTAGTTTTGAGGAACAGATTCGAATGACATCAGATcagtgggatacacaatcatatatcaaattcctaaagttgcgctacaaatgca Alignment from Spaln_aa2Genome AGCTCTATCTCACTAAGGATGACTTGAAAAAGCTTCATGATTTTGAAGAGCAGTGTGTGGAAAAATATTTCCACGAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAG aacgtttagccagtggaattgagaaatctgatatttttgttatttttcagAACTATACCTCACACGGGATGACTTACAAAAGTTTCAG------------CAATGTGTGGGAGAGTTTTTCCACAAGAAAACAGAAGGTCTAAACTGTAGTTTTGAGGAACAGATTCGAATGACATCAGATCAgtgggatacacaatcatatatcaaattcctaaagttgcgctacaaatgca Alignment from Spaln_nt2Genome AGCTCTATCTCACTAAGGATGACTTGAAAAAGCTTCATGATTTTGAAGAGCAGTGTGTGGAAAAATATTTCCACGAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAG aacgtttagccagtggaattgagaaatctgatatttttgttatttttcagAACTATACCTCACACGGGATGACTTACAAAAGTTTC------------AGCAATGTGTGGGAGAGTTTTTCCACAAGAAAACAGAAGGTCTAAACTGTAGTTTTGAGGAACAGATTCGAATGACATCAGATCAgtgggatacacaatcatatatcaaattcctaaagttgcgctacaaatgca Alignment from Pairagon AGCTCTATCTCACTAAGGATGACTTGAAAAAGCTTCATGATTTTGAAGAGCAGTGTGTGGAAAAATATTTCCACGAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAG aacgtttagccagtggaattgagaaatctgatatttttgttatttttcagAACTATACCTCACACGGGATGACTTACAAAAGTTTC------------AGCAATGTGTGGGAGAGTTTTTCCACAAGAAAACAGAAGGTCTAAACTGTAGTTTTGAGGAACAGATTCGAATGACATCAGATCAgtgggatacacaatcatatatcaaattcctaaagttgcgctacaaatgca Alignment from Exonerate_protein2genome AGCTCTATCTCACTAAGGATGACTTGAAAAAGCTTCATGATTTTGAAGAGCAGTGTGTGGAAAAATATTTCCACGAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAG aacgtttagccagtggaattgagaaatctgatatttttgttatttttcagAACTATACCTCACACGGGATGACTTACAAAAGTTT------------CAGCAATGTGTGGGAGAGTTTTTCCACAAGAAAACAGAAGGTCTAAACTGTAGTTTTGAGGAACAGATTCGAATGACATCAGATCAgtgggatacacaatcatatatcaaattcctaaagttgcgctacaaatgca Alignment from Exonerate_coding2genome AGCTCTATCTCACTAAGGATGACTTGAAAAAGCTTCATGATTTTGAAGAGCAGTGTGTGGAAAAATATTTCCACGAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAG aacgtttagccagtggaattgagaaatctgatatttttgttatttttcagAACTATACCTCACACGGGATGACTTACAAAAGTTT------------CAGCAATGTGTGGGAGAGTTTTTCCACAAGAAAACAGAAGGTCTAAACTGTAGTTTTGAGGAACAGATTCGAATGACATCAGATCAgtgggatacacaatcatatatcaaattcctaaagttgcgctacaaatgca Alignment from GeneWise AGCTCTATCTCACTAAGGATGACTTGAAAAAGCTTCATGATTTTGAAGAGCAGTGTGTGGAAAAATATTTCCACGAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAG aacgtttagccagtggaattgagaaatctgatatttttgttatttttcagAACTATACCTCACACGGGATGACTTACAAAAGTTT------------CAGCAATGTGTGGGAGAGTTTTTCCACAAGAAAACAGAAGGTCTAAACTGTAGTTTTGAGGAACAGATTCGAATGACATCAGATCAgtgggatacacaatcatatatcaaattcctaaagttgcgctacaaatgca #### Trpm6_ID4499_32 --> 2 - 1 Original Alignment agATCTCAACCTCCTTAAAAAGCCCTCAAGAGCCTCACCACCATTATTCAg atacacaactagggacctatttgctaccccgcatccttccccttccccagagATCTCAACATCCCTAAAAAGCCCTCAAGAGCCTCACCGCCATTACTCAggtaagtcaagtgcatggtttagtttgtctacactcaatacctatgtaatt Alignment from CESAR agATCTCAACCTCCTTAAAAAGCCCTCAAGAGCCTCACCACCATTATTCAg atacacaactagggacctatttgctaccccgcatccttccccttccccagagATCTCAACATCCCTAAAAAGCCCTCAAGAGCCTCACCGCCATTACTCAggtaagtcaagtgcatggtttagtttgtctacactcaatacctatgtaatt Alignment from Spaln_aa2Genome AGATCTCAACCTCCTTAAAAAGCCCTCAAGAGCCTCACCACCATTATTCAG atacacaactagggacctatttgctaccccgcatccttccccttccccagAGATCTCAACATCCCTAAAAAGCCCTCAAGAGCCTCACCGCCATTACTCAGgtaagtcaagtgcatggtttagtttgtctacactcaatacctatgtaatt Alignment from Spaln_nt2Genome AGATCTCAACCTCCTTAAAAAGCCCTCAAGAGCCTCACCACCATTATTCAG atacacaactagggacctatttgctaccccgcatccttccccttccccagAGATCTCAACATCCCTAAAAAGCCCTCAAGAGCCTCACCGCCATTACTCAGgtaagtcaagtgcatggtttagtttgtctacactcaatacctatgtaatt Alignment from Pairagon AGATCTCAACCTCCTTAAAAAGCCCTCAAGAGCCTCACCACCATTATTCAG atacacaactagggacctatttgctaccccgcatccttccccttccccagAGATCTCAACATCCCTAAAAAGCCCTCAAGAGCCTCACCGCCATTACTCAGgtaagtcaagtgcatggtttagtttgtctacactcaatacctatgtaatt Alignment from Exonerate_protein2genome GAAGTCCAAATGAAGTTCACAAGATCTCAACCTCCTTAAAAAGCCCTCAAGAGCCTCACCACCATTATTCAG atacacaactagggacctatttgctacccCGCATCCTTCCCCTTCCCCAGAGATCTCAACATCCCTAAAAAGCCCTCAAGAGCCTCACCGCCATTACTCAGgtaagtcaagtgcatggtttagtttgtctacactcaatacctatgtaatt Alignment from Exonerate_coding2genome GAAGTCCAAATGAAGTTCACAAGATCTCAACCTCCTTAAAAAGCCCTCAAGAGCCTCACCACCATTATTCAG atacacaactagggacctatttgctacccCGCATCCTTCCCCTTCCCCAGAGATCTCAACATCCCTAAAAAGCCCTCAAGAGCCTCACCGCCATTACTCAGgtaagtcaagtgcatggtttagtttgtctacactcaatacctatgtaatt Alignment from GeneWise ----------CTAACAAGAAGTCCAAATGAAGTTCACAAGATCTCAACCTCCTTAAAAAGCCCTCAAGAGCCTCACCACCATTATTCAG atacacaactagGGACCTATTTGCTACCCCGCATCCTTCCCCTTCCCCAGAGATCTCAACATCCCTAAAAAGCCCTCAAGAGCCTCACCGCCATTACTCAGgtaagtcaagtgcatggtttagtttgtctacactcaatacctatgtaatt #### Trpm6_ID4505_35 --> 0 - 2 Original Alignment GAAATTCAACAGCAAAGAGCTGCCCAAAAACTCATCTATACCTTTAACCAAGTAAAACCACAAACCATTCCCTATACACCAag ggagagatggcttgccttgtgtcattttcctgtgtgtgcttggcttgcagGAAATTCAACAGCAAAGAGCTGCCCAAAAACTTATCTATACCTTTAACCAAGTGAAACCACAATCCATCCCCTACACACCAaggtaagcaaagagttagattaaagtgcacgtaataatgaagtgtaatacct Alignment from CESAR GAAATTCAACAGCAAAGAGCTGCCCAAAAACTCATCTATACCTTTAACCAAGTAAAACCACAAACCATTCCCTATACACCAag ggagagatggcttgccttgtgtcattttcctgtgtgtgcttggcttgcagGAAATTCAACAGCAAAGAGCTGCCCAAAAACTTATCTATACCTTTAACCAAGTGAAACCACAATCCATCCCCTACACACCAaggtaagcaaagagttagattaaagtgcacgtaataatgaagtgtaatacct Alignment from Spaln_aa2Genome GAAATTCAACAGCAAAGAGCTGCCCAAAAACTCATCTATACCTTTAACCAAGTAAAACCACAAACCATTCCCTATACACCAAG ggagagatggcttgccttgtgtcattttcctgtgtgtgcttggcttgcagGAAATTCAACAGCAAAGAGCTGCCCAAAAACTTATCTATACCTTTAACCAAGTGAAACCACAATCCATCCCCTACACACCAAGgtaagcaaagagttagattaaagtgcacgtaataatgaagtgtaatacct Alignment from Spaln_nt2Genome GAAATTCAACAGCAAAGAGCTGCCCAAAAACTCATCTATACCTTTAACCAAGTAAAACCACAAACCATTCCCTATACACCAAG ggagagatggcttgccttgtgtcattttcctgtgtgtgcttggcttgcagGAAATTCAACAGCAAAGAGCTGCCCAAAAACTTATCTATACCTTTAACCAAGTGAAACCACAATCCATCCCCTACACACCAAGgtaagcaaagagttagattaaagtgcacgtaataatgaagtgtaatacct Alignment from Pairagon GAAATTCAACAGCAAAGAGCTGCCCAAAAACTCATCTATACCTTTAACCAAGTAAAACCACAAACCATTCCCTATACACCAAG ggagagatggcttgccttgtgtcattttcctgtgtgtgcttggcttgcagGAAATTCAACAGCAAAGAGCTGCCCAAAAACTTATCTATACCTTTAACCAAGTGAAACCACAATCCATCCCCTACACACCAAGgtaagcaaagagttagattaaagtgcacgtaataatgaagtgtaatacct Alignment from Exonerate_protein2genome GAAATTCAACAGCAAAGAGCTGCCCAAAAACTCATCTATACCTTTAACCAAGTAAAACCACAAACCATTCCCTATACACCAAG ggagagatggcttgccttgtgtcattttcctgtgtgtgcttggcttgcagGAAATTCAACAGCAAAGAGCTGCCCAAAAACTTATCTATACCTTTAACCAAGTGAAACCACAATCCATCCCCTACACACCAAGgtaagcaaagagttagattaaagtgcacgtaataatgaagtgtaatacct Alignment from Exonerate_coding2genome GAAATTCAACAGCAAAGAGCTGCCCAAAAACTCATCTATACCTTTAACCAAGTAAAACCACAAACCATTCCCTATACACCAAG ggagagatggcttgccttgtgtcattttcctgtgtgtgcttggcttgcagGAAATTCAACAGCAAAGAGCTGCCCAAAAACTTATCTATACCTTTAACCAAGTGAAACCACAATCCATCCCCTACACACCAAGgtaagcaaagagttagattaaagtgcacgtaataatgaagtgtaatacct Alignment from GeneWise GAAATTCAACAGCAAAGAGCTGCCCAAAAACTCATCTATACCTTTAACCAAGTAAAACCACAAACCATTCCCTATACACCAAG ggagagatggcttgccttgtgtcattttcctgtgtgtgcttggcttgcagGAAATTCAACAGCAAAGAGCTGCCCAAAAACTTATCTATACCTTTAACCAAGTGAAACCACAATCCATCCCCTACACACCAAGgtaagcaaagagttagattaaagtgcacgtaataatgaagtgtaatacct #### Trpm6_ID4507_36 --> 1 - 1 Original Alignment gTTTCTCGAGGTTTCCTTGGTCTACTGCCATTCAGCCAACCAATGGTTAACCATTGAGAAGTACATGACAGGGGAGTTCCGGAAATACAATAACAACAATGGTGATGAAATAGCTCCCACCAATACCCTGGAAGAACTGATGTTGGCTTTCTCTCACTGGACCTATGAATATACCCGGGGAGAGCTGCTGGTTTTAGATTTGCAAg cttttcccttggttgtccagatatttgtcctcatgctcactcccccacaggTTTCTTGAAGTTCCTTTAGTCTACTGCCATTCAGCTAAACAATGGGTGACCATTGAAAAGTATATGACTGGAGAGTTTCGAAAATACAATAACAACAATGGGGACCAGATAGCTCCCACCAATACCCTGGTAGAACTGATGTTGGCTTTCTCT---TGGACCTACAAATACACACAAGGGGAGATATTGGTTTTAGACTTGCAAggtaagaaattttacttgacaatataaaagccacacccaatagcccattat Alignment from CESAR gTTTCTCGAGGTTTCCTTGGTCTACTGCCATTCAGCCAACCAATGGTTAACCATTGAGAAGTACATGACAGGGGAGTTCCGGAAATACAATAACAACAATGGTGATGAAATAGCTCCCACCAATACCCTGGAAGAACTGATGTTGGCTTTCTCTCACTGGACCTATGAATATACCCGGGGAGAGCTGCTGGTTTTAGATTTGCAAg cttttcccttggttgtccagatatttgtcctcatgctcactcccccacaggTTTCTTGAAGTTCCTTTAGTCTACTGCCATTCAGCTAAACAATGGGTGACCATTGAAAAGTATATGACTGGAGAGTTTCGAAAATACAATAACAACAATGGGGACCAGATAGCTCCCACCAATACCCTGGTAGAACTGATGTTGGCTTTCTCT---TGGACCTACAAATACACACAAGGGGAGATATTGGTTTTAGACTTGCAAggtaagaaattttacttgacaatataaaagccacacccaatagcccattat Alignment from Spaln_aa2Genome GTTTCTCGAGGTTTCCTTGGTCTACTGCCATTCAGCCAACCAATGGTTAACCATTGAGAAGTACATGACAGGGGAGTTCCGGAAATACAATAACAACAATGGTGATGAAATAGCTCCCACCAATACCCTGGAAGAACTGATGTTGGCTTTCTCTCACTGGACCTATGAATATACCCGGGGAGAGCTGCTGGTTTTAGATTTGCAAG cttttcccttggttgtccagatatttgtcctcatgctcactcccccacagGTTTCTTGAAGTTCCTTTAGTCTACTGCCATTCAGCTAAACAATGGGTGACCATTGAAAAGTATATGACTGGAGAGTTTCGAAAATACAATAACAACAATGGGGACCAGATAGCTCCCACCAATACCCTGGTAGAACTGATGTTGGCTTTCTCT---TGGACCTACAAATACACACAAGGGGAGATATTGGTTTTAGACTTGCAAGgtaagaaattttacttgacaatataaaagccacacccaatagcccattat Alignment from Spaln_nt2Genome GTTTCTCGAGGTTTCCTTGGTCTACTGCCATTCAGCCAACCAATGGTTAACCATTGAGAAGTACATGACAGGGGAGTTCCGGAAATACAATAACAACAATGGTGATGAAATAGCTCCCACCAATACCCTGGAAGAACTGATGTTGGCTTTCTCTCACTGGACCTATGAATATACCCGGGGAGAGCTGCTGGTTTTAGATTTGCAAG cttttcccttggttgtccagatatttgtcctcatgctcactcccccacagGTTTCTTGAAGTTCCTTTAGTCTACTGCCATTCAGCTAAACAATGGGTGACCATTGAAAAGTATATGACTGGAGAGTTTCGAAAATACAATAACAACAATGGGGACCAGATAGCTCCCACCAATACCCTGGTAGAACTGATGTTGGCTTTCTCT---TGGACCTACAAATACACACAAGGGGAGATATTGGTTTTAGACTTGCAAGgtaagaaattttacttgacaatataaaagccacacccaatagcccattat Alignment from Pairagon GTTTCTCGAGGTTTCCTTGGTCTACTGCCATTCAGCCAACCAATGGTTAACCATTGAGAAGTACATGACAGGGGAGTTCCGGAAATACAATAACAACAATGGTGATGAAATAGCTCCCACCAATACCCTGGAAGAACTGATGTTGGCTTTCTCTCACTGGACCTATGAATATACCCGGGGAGAGCTGCTGGTTTTAGATTTGCAAG cttttcccttggttgtccagatatttgtcctcatgctcactcccccacagGTTTCTTGAAGTTCCTTTAGTCTACTGCCATTCAGCTAAACAATGGGTGACCATTGAAAAGTATATGACTGGAGAGTTTCGAAAATACAATAACAACAATGGGGACCAGATAGCTCCCACCAATACCCTGGTAGAACTGATGTTGGCTTTCTCT---TGGACCTACAAATACACACAAGGGGAGATATTGGTTTTAGACTTGCAAGgtaagaaattttacttgacaatataaaagccacacccaatagcccattat Alignment from Exonerate_protein2genome GTTTCTCGAGGTTTCCTTGGTCTACTGCCATTCAGCCAACCAATGGTTAACCATTGAGAAGTACATGACAGGGGAGTTCCGGAAATACAATAACAACAATGGTGATGAAATAGCTCCCACCAATACCCTGGAAGAACTGATGTTGGCTTTCTCTCACTGGACCTATGAATATACCCGGGGAGAGCTGCTGGTTTTAGATTTGCAAG cttttcccttggttgtccagatatttgtcctcatgctcactcccccacagGTTTCTTGAAGTTCCTTTAGTCTACTGCCATTCAGCTAAACAATGGGTGACCATTGAAAAGTATATGACTGGAGAGTTTCGAAAATACAATAACAACAATGGGGACCAGATAGCTCCCACCAATACCCTGGTAGAACTGATGTTGGCTTTCTCT---TGGACCTACAAATACACACAAGGGGAGATATTGGTTTTAGACTTGCAAGgtaagaaattttacttgacaatataaaagccacacccaatagcccattat Alignment from Exonerate_coding2genome GTTTCTCGAGGTTTCCTTGGTCTACTGCCATTCAGCCAACCAATGGTTAACCATTGAGAAGTACATGACAGGGGAGTTCCGGAAATACAATAACAACAATGGTGATGAAATAGCTCCCACCAATACCCTGGAAGAACTGATGTTGGCTTTCTCTCACTGGACCTATGAATATACCCGGGGAGAGCTGCTGGTTTTAGATTTGCAAG cttttcccttggttgtccagatatttgtcctcatgctcactcccccacagGTTTCTTGAAGTTCCTTTAGTCTACTGCCATTCAGCTAAACAATGGGTGACCATTGAAAAGTATATGACTGGAGAGTTTCGAAAATACAATAACAACAATGGGGACCAGATAGCTCCCACCAATACCCTGGTAGAACTGATGTTGGCTTTCTCT---TGGACCTACAAATACACACAAGGGGAGATATTGGTTTTAGACTTGCAAGgtaagaaattttacttgacaatataaaagccacacccaatagcccattat Alignment from GeneWise GTTTCTCGAGGTTTCCTTGGTCTACTGCCATTCAGCCAACCAATGGTTAACCATTGAGAAGTACATGACAGGGGAGTTCCGGAAATACAATAACAACAATGGTGATGAAATAGCTCCCACCAATACCCTGGAAGAACTGATGTTGGCTTTCTCTCACTGGACCTATGAATATACCCGGGGAGAGCTGCTGGTTTTAGATTTGCAAG cttttcccttggttgtccagatatttgtcctcatgctcactcccccacagGTTTCTTGAAGTTCCTTTAGTCTACTGCCATTCAGCTAAACAATGGGTGACCATTGAAAAGTATATGACTGGAGAGTTTCGAAAATACAATAACAACAATGGGGACCAGATAGCTCCCACCAATACCCTGGTAGAACTGATGTTGGCTTTCTCT---TGGACCTACAAATACACACAAGGGGAGATATTGGTTTTAGACTTGCAAGgtaagaaattttacttgacaatataaaagccacacccaatagcccattat #### Trub1_ID12384_4 --> 0 - 1 Original Alignment AGGTATATCACCATCGGAGAACTGGGGAAAGCCACGGACACCCTGGATTCTACTGGGAAGGTAACGGAAGAGAAGCCGTATg tgttccaagaaaatatgctcaccatcactcttgtttttttgctgtttcagAGATACATCACCATTGGTGAACTGGGGAAGGCTACAGACACCTTGGATGGCACAGGAAAGGTAACAAAAGAGAAACCATACggtgggtcagtgtatgagaatccgctgctgagacctagcccacttcactca Alignment from CESAR AGGTATATCACCATCGGAGAACTGGGGAAAGCCACGGACACCCTGGATTCTACTGGGAAGGTAACGGAAGAGAAGCCGTATg tgttccaagaaaatatgctcaccatcactcttgtttttttgctgtttcagAGATACATCACCATTGGTGAACTGGGGAAGGCTACAGACACCTTGGATGGCACAGGAAAGGTAACAAAAGAGAAACCATACggtgggtcagtgtatgagaatccgctgctgagacctagcccacttcactca Alignment from Spaln_aa2Genome AGGTATATCACCATCGGAGAACTGGGGAAAGCCACGGACACCCTGGATTCTACTGGGAAGGTAACGGAAGAGAAGCCGTATG tgttccaagaaaatatgctcaccatcactcttgtttttttgctgtttcagAGATACATCACCATTGGTGAACTGGGGAAGGCTACAGACACCTTGGATGGCACAGGAAAGGTAACAAAAGAGAAACCATACGgtgggtcagtgtatgagaatccgctgctgagacctagcccacttcactca Alignment from Spaln_nt2Genome AGGTATATCACCATCGGAGAACTGGGGAAAGCCACGGACACCCTGGATTCTACTGGGAAGGTAACGGAAGAGAAGCCGTATG tgttccaagaaaatatgctcaccatcactcttgtttttttgctgtttcagAGATACATCACCATTGGTGAACTGGGGAAGGCTACAGACACCTTGGATGGCACAGGAAAGGTAACAAAAGAGAAACCATACGgtgggtcagtgtatgagaatccgctgctgagacctagcccacttcactca Alignment from Pairagon AGGTATATCACCATCGGAGAACTGGGGAAAGCCACGGACACCCTGGATTCTACTGGGAAGGTAACGGAAGAGAAGCCGTATG tgttccaagaaaatatgctcaccatcactcttgtttttttgctgtttcagAGATACATCACCATTGGTGAACTGGGGAAGGCTACAGACACCTTGGATGGCACAGGAAAGGTAACAAAAGAGAAACCATACGgtgggtcagtgtatgagaatccgctgctgagacctagcccacttcactca Alignment from Exonerate_protein2genome AGGTATATCACCATCGGAGAACTGGGGAAAGCCACGGACACCCTGGATTCTACTGGGAAGGTAACGGAAGAGAAGCCGTATG tgttccaagaaaatatgctcaccatcactcttgtttttttgctgtttcagAGATACATCACCATTGGTGAACTGGGGAAGGCTACAGACACCTTGGATGGCACAGGAAAGGTAACAAAAGAGAAACCATACGgtgggtcagtgtatgagaatccgctgctgagacctagcccacttcactca Alignment from Exonerate_coding2genome AGGTATATCACCATCGGAGAACTGGGGAAAGCCACGGACACCCTGGATTCTACTGGGAAGGTAACGGAAGAGAAGCCGTATG tgttccaagaaaatatgctcaccatcactcttgtttttttgctgtttcagAGATACATCACCATTGGTGAACTGGGGAAGGCTACAGACACCTTGGATGGCACAGGAAAGGTAACAAAAGAGAAACCATACGgtgggtcagtgtatgagaatccgctgctgagacctagcccacttcactca Alignment from GeneWise AGGTATATCACCATCGGAGAACTGGGGAAAGCCACGGACACCCTGGATTCTACTGGGAAGGTAACGGAAGAGAAGCCGTATG tgttccaagaaaatatgctcaccatcactcttgtttttttgctgtttcagAGATACATCACCATTGGTGAACTGGGGAAGGCTACAGACACCTTGGATGGCACAGGAAAGGTAACAAAAGAGAAACCATACGgtgggtcagtgtatgagaatccgctgctgagacctagcccacttcactca #### Trub1_ID12387_7 --> 2 - 1 Original Alignment atGTTGAATGCGGAGGAGGCTTTTACATCCGGAGCCTGGTCAGTGACATCGGCAAAg tagaactcctctaaaggtgaaaatcgacaaattttattgttttcttgcagatGTTGAATGTGGAGGTGGCTTTTACACCCGGAGTTTGGTCAGTGACATTGGGAAAggtgaggtttgtatgcccagagtccctatttcagaaaatgcgtcataacaa Alignment from CESAR atGTTGAATGCGGAGGAGGCTTTTACATCCGGAGCCTGGTCAGTGACATCGGCAAAg tagaactcctctaaaggtgaaaatcgacaaattttattgttttcttgcagatGTTGAATGTGGAGGTGGCTTTTACACCCGGAGTTTGGTCAGTGACATTGGGAAAggtgaggtttgtatgcccagagtccctatttcagaaaatgcgtcataacaa Alignment from Spaln_aa2Genome ATGTTGAATGCGGAGGAGGCTTTTACATCCGGAGCCTGGTCAGTGACATCGGCAAAG tagaactcctctaaaggtgaaaatcgacaaattttattgttttcttgcagATGTTGAATGTGGAGGTGGCTTTTACACCCGGAGTTTGGTCAGTGACATTGGGAAAGgtgaggtttgtatgcccagagtccctatttcagaaaatgcgtcataacaa Alignment from Spaln_nt2Genome ATGTTGAATGCGGAGGAGGCTTTTACATCCGGAGCCTGGTCAGTGACATCGGCAAAG tagaactcctctaaaggtgaaaatcgacaaattttattgttttcttgcagATGTTGAATGTGGAGGTGGCTTTTACACCCGGAGTTTGGTCAGTGACATTGGGAAAGgtgaggtttgtatgcccagagtccctatttcagaaaatgcgtcataacaa Alignment from Pairagon ATGTTGAATGCGGAGGAGGCTTTTACATCCGGAGCCTGGTCAGTGACATCGGCAAAG tagaactcctctaaaggtgaaaatcgacaaattttattgttttcttgcagATGTTGAATGTGGAGGTGGCTTTTACACCCGGAGTTTGGTCAGTGACATTGGGAAAGgtgaggtttgtatgcccagagtccctatttcagaaaatgcgtcataacaa Alignment from Exonerate_protein2genome ATGTTGAATGCGGAGGAGGCTTTTACATCCGGAGCCTGGTCAGTGACATCGGCAAAG tagaactcctctaaaggtgaaaatcgacaaattttattgttttcttgcagATGTTGAATGTGGAGGTGGCTTTTACACCCGGAGTTTGGTCAGTGACATTGGGAAAGgtgaggtttgtatgcccagagtccctatttcagaaaatgcgtcataacaa Alignment from Exonerate_coding2genome ATGTTGAATGCGGAGGAGGCTTTTACATCCGGAGCCTGGTCAGTGACATCGGCAAAG tagaactcctctaaaggtgaaaatcgacaaattttattgttttcttgcagATGTTGAATGTGGAGGTGGCTTTTACACCCGGAGTTTGGTCAGTGACATTGGGAAAGgtgaggtttgtatgcccagagtccctatttcagaaaatgcgtcataacaa Alignment from GeneWise ATGTTGAATGCGGAGGAGGCTTTTACATCCGGAGCCTGGTCAGTGACATCGGCAAAG tagaactcctctaaaggtgaaaatcgacaaattttattgttttcttgcagATGTTGAATGTGGAGGTGGCTTTTACACCCGGAGTTTGGTCAGTGACATTGGGAAAGgtgaggtttgtatgcccagagtccctatttcagaaaatgcgtcataacaa #### Ttc9c_ID2391_2 --> 2 - 1 Original Alignment ccTGTCTCCTCCAGATGGAGCCAGTGAACTATGAACGAGTGAGGGAATACAGTCAGAAAGTCCTAGAACGACAACCCGATAATGCCAAGGCCTTGTATCGGGCTGGAGTAGCCTTCTTCCACCTGCAAGACTATGACCGGGCTCGACACCACCTGCTTGCTGCTGTCAATAGGCAACCTAAAg aataaaggaaatctttgagtgcctcacataattttatgaaatctgtgcagccTGTCTCCTCCAGACGGAGCCAGTGAACTATGAACGAGTAAGGGAATACAGTCAGAAAGTACTGCAACAACAACCTGATAATGCCAAAGCCTTGTATCGCACTGGTGTAGCATTCTTTCACTTACAAGACTATGATCAGGCTCGACATCATTTCCTTGCTGCTGTCAATAGGCAACCTAAAggtaagaaaggaatgcatccaggtattattacaaagtcagtcctgattatt Alignment from CESAR ccTGTCTCCTCCAGATGGAGCCAGTGAACTATGAACGAGTGAGGGAATACAGTCAGAAAGTCCTAGAACGACAACCCGATAATGCCAAGGCCTTGTATCGGGCTGGAGTAGCCTTCTTCCACCTGCAAGACTATGACCGGGCTCGACACCACCTGCTTGCTGCTGTCAATAGGCAACCTAAAg aataaaggaaatctttgagtgcctcacataattttatgaaatctgtgcagccTGTCTCCTCCAGACGGAGCCAGTGAACTATGAACGAGTAAGGGAATACAGTCAGAAAGTACTGCAACAACAACCTGATAATGCCAAAGCCTTGTATCGCACTGGTGTAGCATTCTTTCACTTACAAGACTATGATCAGGCTCGACATCATTTCCTTGCTGCTGTCAATAGGCAACCTAAAggtaagaaaggaatgcatccaggtattattacaaagtcagtcctgattatt Alignment from Spaln_aa2Genome CCTGTCTCCTCCAGATGGAGCCAGTGAACTATGAACGAGTGAGGGAATACAGTCAGAAAGTCCTAGAACGACAACCCGATAATGCCAAGGCCTTGTATCGGGCTGGAGTAGCCTTCTTCCACCTGCAAGACTATGACCGGGCTCGACACCACCTGCTTGCTGCTGTCAATAGGCAACCTAAAG aataaaggaaatctttgagtgcctcacataattttatgaaatctgtgcagCCTGTCTCCTCCAGACGGAGCCAGTGAACTATGAACGAGTAAGGGAATACAGTCAGAAAGTACTGCAACAACAACCTGATAATGCCAAAGCCTTGTATCGCACTGGTGTAGCATTCTTTCACTTACAAGACTATGATCAGGCTCGACATCATTTCCTTGCTGCTGTCAATAGGCAACCTAAAGgtaagaaaggaatgcatccaggtattattacaaagtcagtcctgattatt Alignment from Spaln_nt2Genome CCTGTCTCCTCCAGATGGAGCCAGTGAACTATGAACGAGTGAGGGAATACAGTCAGAAAGTCCTAGAACGACAACCCGATAATGCCAAGGCCTTGTATCGGGCTGGAGTAGCCTTCTTCCACCTGCAAGACTATGACCGGGCTCGACACCACCTGCTTGCTGCTGTCAATAGGCAACCTAAAG aataaaggaaatctttgagtgcctcacataattttatgaaatctgtgcagCCTGTCTCCTCCAGACGGAGCCAGTGAACTATGAACGAGTAAGGGAATACAGTCAGAAAGTACTGCAACAACAACCTGATAATGCCAAAGCCTTGTATCGCACTGGTGTAGCATTCTTTCACTTACAAGACTATGATCAGGCTCGACATCATTTCCTTGCTGCTGTCAATAGGCAACCTAAAGgtaagaaaggaatgcatccaggtattattacaaagtcagtcctgattatt Alignment from Pairagon CCTGTCTCCTCCAGATGGAGCCAGTGAACTATGAACGAGTGAGGGAATACAGTCAGAAAGTCCTAGAACGACAACCCGATAATGCCAAGGCCTTGTATCGGGCTGGAGTAGCCTTCTTCCACCTGCAAGACTATGACCGGGCTCGACACCACCTGCTTGCTGCTGTCAATAGGCAACCTAAAG aataaaggaaatctttgagtgcctcacataattttatgaaatctgtgcagCCTGTCTCCTCCAGACGGAGCCAGTGAACTATGAACGAGTAAGGGAATACAGTCAGAAAGTACTGCAACAACAACCTGATAATGCCAAAGCCTTGTATCGCACTGGTGTAGCATTCTTTCACTTACAAGACTATGATCAGGCTCGACATCATTTCCTTGCTGCTGTCAATAGGCAACCTAAAGgtaagaaaggaatgcatccaggtattattacaaagtcagtcctgattatt Alignment from Exonerate_protein2genome CCTGTCTCCTCCAGATGGAGCCAGTGAACTATGAACGAGTGAGGGAATACAGTCAGAAAGTCCTAGAACGACAACCCGATAATGCCAAGGCCTTGTATCGGGCTGGAGTAGCCTTCTTCCACCTGCAAGACTATGACCGGGCTCGACACCACCTGCTTGCTGCTGTCAATAGGCAACCTAAAG aataaaggaaatctttgagtgcctcacataattttatgaaatctgtgcagCCTGTCTCCTCCAGACGGAGCCAGTGAACTATGAACGAGTAAGGGAATACAGTCAGAAAGTACTGCAACAACAACCTGATAATGCCAAAGCCTTGTATCGCACTGGTGTAGCATTCTTTCACTTACAAGACTATGATCAGGCTCGACATCATTTCCTTGCTGCTGTCAATAGGCAACCTAAAGgtaagaaaggaatgcatccaggtattattacaaagtcagtcctgattatt Alignment from Exonerate_coding2genome CCTGTCTCCTCCAGATGGAGCCAGTGAACTATGAACGAGTGAGGGAATACAGTCAGAAAGTCCTAGAACGACAACCCGATAATGCCAAGGCCTTGTATCGGGCTGGAGTAGCCTTCTTCCACCTGCAAGACTATGACCGGGCTCGACACCACCTGCTTGCTGCTGTCAATAGGCAACCTAAAG aataaaggaaatctttgagtgcctcacataattttatgaaatctgtgcagCCTGTCTCCTCCAGACGGAGCCAGTGAACTATGAACGAGTAAGGGAATACAGTCAGAAAGTACTGCAACAACAACCTGATAATGCCAAAGCCTTGTATCGCACTGGTGTAGCATTCTTTCACTTACAAGACTATGATCAGGCTCGACATCATTTCCTTGCTGCTGTCAATAGGCAACCTAAAGgtaagaaaggaatgcatccaggtattattacaaagtcagtcctgattatt Alignment from GeneWise CCTGTCTCCTCCAGATGGAGCCAGTGAACTATGAACGAGTGAGGGAATACAGTCAGAAAGTCCTAGAACGACAACCCGATAATGCCAAGGCCTTGTATCGGGCTGGAGTAGCCTTCTTCCACCTGCAAGACTATGACCGGGCTCGACACCACCTGCTTGCTGCTGTCAATAGGCAACCTAAAG aataaaggaaatctttgagtgcctcacataattttatgaaatctgtgcagCCTGTCTCCTCCAGACGGAGCCAGTGAACTATGAACGAGTAAGGGAATACAGTCAGAAAGTACTGCAACAACAACCTGATAATGCCAAAGCCTTGTATCGCACTGGTGTAGCATTCTTTCACTTACAAGACTATGATCAGGCTCGACATCATTTCCTTGCTGCTGTCAATAGGCAACCTAAAGgtaagaaaggaatgcatccaggtattattacaaagtcagtcctgattatt #### Ubxn1_ID2443_7 --> 0 - 0 Original Alignment TATGGTGGTAGTGTGGGTTCTCGGTCATCCCCACCAGCAACAGACCCAGGTCCTGTTCCTTCTTCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAG ttatagacctgatgaataaatagggcctccttttgctcttctttaaacagTGTGGTGGCAGTGTGGGTTCACGGACATCCCCACCAGCAACTGACCCAGGTCCTGTACCATCTCCTCCAAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTACACAAgtgagttatccaggggactatcttcctgaggactttcatgtaaccttcaa Alignment from CESAR TATGGTGGTAGTGTGGGTTCTCGGTCATCCCCACCAGCAACAGACCCAGGTCCTGTTCCTTCTTCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAG ttatagacctgatgaataaatagggcctccttttgctcttctttaaacagTGTGGTGGCAGTGTGGGTTCACGGACATCCCCACCAGCAACTGACCCAGGTCCTGTACCATCTCCTCCAAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTACACAAgtgagttatccaggggactatcttcctgaggactttcatgtaaccttcaa Alignment from Spaln_aa2Genome TATGGTGGTAGTGTGGGTTCTCGGTCATCCCCACCAGCAACAGACCCAGGTCCTGTTCCTTCTTCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAG ttatagacctgatgaataaatagggcctccttttgctcttctttaaacagTGTGGTGGCAGTGTGGGTTCACGGACATCCCCACCAGCAACTGACCCAGGTCCTGTACCATCTCCTCCAAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTACACAAgtgagttatccaggggactatcttcctgaggactttcatgtaaccttcaa Alignment from Spaln_nt2Genome TATGGTGGTAGTGTGGGTTCTCGGTCATCCCCACCAGCAACAGACCCAGGTCCTGTTCCTTCTTCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAG ttatagacctgatgaataaatagggcctccttttgctcttctttaaacagTGTGGTGGCAGTGTGGGTTCACGGACATCCCCACCAGCAACTGACCCAGGTCCTGTACCATCTCCTCCAAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTACACAAgtgagttatccaggggactatcttcctgaggactttcatgtaaccttcaa Alignment from Pairagon TATGGTGGTAGTGTGGGTTCTCGGTCATCCCCACCAGCAACAGACCCAGGTCCTGTTCCTTCTTCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAG ttatagacctgatgaataaatagggcctccttttgctcttctttaaacagTGTGGTGGCAGTGTGGGTTCACGGACATCCCCACCAGCAACTGACCCAGGTCCTGTACCATCTCCTCCAAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTACACAAgtgagttatccaggggactatcttcctgaggactttcatgtaaccttcaa Alignment from Exonerate_protein2genome TATGGTGGTAGTGTGGGTTCTCGGTCATCCCCACCAGCAACAGACCCAGGTCCTGTTCCTTCTTCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAG ttatagacctgatgaataaatagggcctccttttgctcttctttaaacagTGTGGTGGCAGTGTGGGTTCACGGACATCCCCACCAGCAACTGACCCAGGTCCTGTACCATCTCCTCCAAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTACACAAgtgagttatccaggggactatcttcctgaggactttcatgtaaccttcaa Alignment from Exonerate_coding2genome TATGGTGGTAGTGTGGGTTCTCGGTCATCCCCACCAGCAACAGACCCAGGTCCTGTTCCTTCTTCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAG ttatagacctgatgaataaatagggcctccttttgctcttctttaaacagTGTGGTGGCAGTGTGGGTTCACGGACATCCCCACCAGCAACTGACCCAGGTCCTGTACCATCTCCTCCAAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTACACAAgtgagttatccaggggactatcttcctgaggactttcatgtaaccttcaa Alignment from GeneWise TATGGTGGTAGTGTGGGTTCTCGGTCATCCCCACCAGCAACAGACCCAGGTCCTGTTCCTTCTTCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAG ttatagacctgatgaataaatagggcctccttttgctcttctttaaacagTGTGGTGGCAGTGTGGGTTCACGGACATCCCCACCAGCAACTGACCCAGGTCCTGTACCATCTCCTCCAAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTACACAAgtgagttatccaggggactatcttcctgaggactttcatgtaaccttcaa #### Uhrf2_ID6372_3 --> 0 - 2 Original Alignment GTAAATGAATTGGTGGATGCCAGAGATGTCGGCCTTGGTGCTTGGTTTGAAGCACATATACATAGTGTTACTAGAGCTTCTGATGGACATTCACGTGGCAAAACTCCACTGAAGAATGGCAGTTCTTATAAAAGGACTAATGGAAATGTAAATCATAATTCCAAAGAGAACACAAATAAATTGGACAATGTACCCTCTACGTCTAATTCAGACTCAGTTGCTGCTGATGAAGACGTTATTTATCATATCGAGTATGATga tcagggtcctttaaccctcccatatttcgaacagatgacccctcttctagGTAAATGAATTAGTGGATGCCAGAGATGTTGGCCTGGGTGCATGGTTTGAAGCTCATATTCACAGTGTTACTAGAGCCTCTGATGGGCACTCACGTGGTAAAATTCCCTTAAAAAATGGAAGTTCTTATAAGAGAACTAATGGAATCATAAACCACAATTCCAAAGAGAACAAAAACAAACTAGATAATGTACCCTCTACATCAAATTCAGACTCAGTTGCTGCTGATGAAGACGTTATTTATCAGATCAAGTATGATgagtctggacagttagtctatttagtttgtgtgtctgaataacctgaggtca Alignment from CESAR GTAAATGAATTGGTGGATGCCAGAGATGTCGGCCTTGGTGCTTGGTTTGAAGCACATATACATAGTGTTACTAGAGCTTCTGATGGACATTCACGTGGCAAAACTCCACTGAAGAATGGCAGTTCTTATAAAAGGACTAATGGAAATGTAAATCATAATTCCAAAGAGAACACAAATAAATTGGACAATGTACCCTCTACGTCTAATTCAGACTCAGTTGCTGCTGATGAAGACGTTATTTATCATATCGAGTATGATga tcagggtcctttaaccctcccatatttcgaacagatgacccctcttctagGTAAATGAATTAGTGGATGCCAGAGATGTTGGCCTGGGTGCATGGTTTGAAGCTCATATTCACAGTGTTACTAGAGCCTCTGATGGGCACTCACGTGGTAAAATTCCCTTAAAAAATGGAAGTTCTTATAAGAGAACTAATGGAATCATAAACCACAATTCCAAAGAGAACAAAAACAAACTAGATAATGTACCCTCTACATCAAATTCAGACTCAGTTGCTGCTGATGAAGACGTTATTTATCAGATCAAGTATGATgagtctggacagttagtctatttagtttgtgtgtctgaataacctgaggtca Alignment from Spaln_aa2Genome GTAAATGAATTGGTGGATGCCAGAGATGTCGGCCTTGGTGCTTGGTTTGAAGCACATATACATAGTGTTACTAGAGCTTCTGATGGACATTCACGTGGCAAAACTCCACTGAAGAATGGCAGTTCTTATAAAAGGACTAATGGAAATGTAAATCATAATTCCAAAGAGAACACAAATAAATTGGACAATGTACCCTCTACGTCTAATTCAGACTCAGTTGCTGCTGATGAAGACGTTATTTATCATATCGAGTATGATGA tcagggtcctttaaccctcccatatttcgaacagatgacccctcttctagGTAAATGAATTAGTGGATGCCAGAGATGTTGGCCTGGGTGCATGGTTTGAAGCTCATATTCACAGTGTTACTAGAGCCTCTGATGGGCACTCACGTGGTAAAATTCCCTTAAAAAATGGAAGTTCTTATAAGAGAACTAATGGAATCATAAACCACAATTCCAAAGAGAACAAAAACAAACTAGATAATGTACCCTCTACATCAAATTCAGACTCAGTTGCTGCTGATGAAGACGTTATTTATCAGATCAAGTATGATGAgtctggacagttagtctatttagtttgtgtgtctgaataacctgaggtca Alignment from Spaln_nt2Genome GTAAATGAATTGGTGGATGCCAGAGATGTCGGCCTTGGTGCTTGGTTTGAAGCACATATACATAGTGTTACTAGAGCTTCTGATGGACATTCACGTGGCAAAACTCCACTGAAGAATGGCAGTTCTTATAAAAGGACTAATGGAAATGTAAATCATAATTCCAAAGAGAACACAAATAAATTGGACAATGTACCCTCTACGTCTAATTCAGACTCAGTTGCTGCTGATGAAGACGTTATTTATCATATCGAGTATGATGA tcagggtcctttaaccctcccatatttcgaacagatgacccctcttctagGTAAATGAATTAGTGGATGCCAGAGATGTTGGCCTGGGTGCATGGTTTGAAGCTCATATTCACAGTGTTACTAGAGCCTCTGATGGGCACTCACGTGGTAAAATTCCCTTAAAAAATGGAAGTTCTTATAAGAGAACTAATGGAATCATAAACCACAATTCCAAAGAGAACAAAAACAAACTAGATAATGTACCCTCTACATCAAATTCAGACTCAGTTGCTGCTGATGAAGACGTTATTTATCAGATCAAGTATGATGAgtctggacagttagtctatttagtttgtgtgtctgaataacctgaggtca Alignment from Pairagon GTAAATGAATTGGTGGATGCCAGAGATGTCGGCCTTGGTGCTTGGTTTGAAGCACATATACATAGTGTTACTAGAGCTTCTGATGGACATTCACGTGGCAAAACTCCACTGAAGAATGGCAGTTCTTATAAAAGGACTAATGGAAATGTAAATCATAATTCCAAAGAGAACACAAATAAATTGGACAATGTACCCTCTACGTCTAATTCAGACTCAGTTGCTGCTGATGAAGACGTTATTTATCATATCGAGTATGATGA tcagggtcctttaaccctcccatatttcgaacagatgacccctcttctagGTAAATGAATTAGTGGATGCCAGAGATGTTGGCCTGGGTGCATGGTTTGAAGCTCATATTCACAGTGTTACTAGAGCCTCTGATGGGCACTCACGTGGTAAAATTCCCTTAAAAAATGGAAGTTCTTATAAGAGAACTAATGGAATCATAAACCACAATTCCAAAGAGAACAAAAACAAACTAGATAATGTACCCTCTACATCAAATTCAGACTCAGTTGCTGCTGATGAAGACGTTATTTATCAGATCAAGTATGATGAgtctggacagttagtctatttagtttgtgtgtctgaataacctgaggtca Alignment from Exonerate_protein2genome GTAAATGAATTGGTGGATGCCAGAGATGTCGGCCTTGGTGCTTGGTTTGAAGCACATATACATAGTGTTACTAGAGCTTCTGATGGACATTCACGTGGCAAAACTCCACTGAAGAATGGCAGTTCTTATAAAAGGACTAATGGAAATGTAAATCATAATTCCAAAGAGAACACAAATAAATTGGACAATGTACCCTCTACGTCTAATTCAGACTCAGTTGCTGCTGATGAAGACGTTATTTATCATATCGAGTATGATGA tcagggtcctttaaccctcccatatttcgaacagatgacccctcttctagGTAAATGAATTAGTGGATGCCAGAGATGTTGGCCTGGGTGCATGGTTTGAAGCTCATATTCACAGTGTTACTAGAGCCTCTGATGGGCACTCACGTGGTAAAATTCCCTTAAAAAATGGAAGTTCTTATAAGAGAACTAATGGAATCATAAACCACAATTCCAAAGAGAACAAAAACAAACTAGATAATGTACCCTCTACATCAAATTCAGACTCAGTTGCTGCTGATGAAGACGTTATTTATCAGATCAAGTATGATGAgtctggacagttagtctatttagtttgtgtgtctgaataacctgaggtca Alignment from Exonerate_coding2genome GTAAATGAATTGGTGGATGCCAGAGATGTCGGCCTTGGTGCTTGGTTTGAAGCACATATACATAGTGTTACTAGAGCTTCTGATGGACATTCACGTGGCAAAACTCCACTGAAGAATGGCAGTTCTTATAAAAGGACTAATGGAAATGTAAATCATAATTCCAAAGAGAACACAAATAAATTGGACAATGTACCCTCTACGTCTAATTCAGACTCAGTTGCTGCTGATGAAGACGTTATTTATCATATCGAGTATGATGA tcagggtcctttaaccctcccatatttcgaacagatgacccctcttctagGTAAATGAATTAGTGGATGCCAGAGATGTTGGCCTGGGTGCATGGTTTGAAGCTCATATTCACAGTGTTACTAGAGCCTCTGATGGGCACTCACGTGGTAAAATTCCCTTAAAAAATGGAAGTTCTTATAAGAGAACTAATGGAATCATAAACCACAATTCCAAAGAGAACAAAAACAAACTAGATAATGTACCCTCTACATCAAATTCAGACTCAGTTGCTGCTGATGAAGACGTTATTTATCAGATCAAGTATGATGAgtctggacagttagtctatttagtttgtgtgtctgaataacctgaggtca Alignment from GeneWise GTAAATGAATTGGTGGATGCCAGAGATGTCGGCCTTGGTGCTTGGTTTGAAGCACATATACATAGTGTTACTAGAGCTTCTGATGGACATTCACGTGGCAAAACTCCACTGAAGAATGGCAGTTCTTATAAAAGGACTAATGGAAATGTAAATCATAATTCCAAAGAGAACACAAATAAATTGGACAATGTACCCTCTACGTCTAATTCAGACTCAGTTGCTGCTGATGAAGACGTTATTTATCATATCGAGTATGATGA tcagggtcctttaaccctcccatatttcgaacagatgacccctcttctagGTAAATGAATTAGTGGATGCCAGAGATGTTGGCCTGGGTGCATGGTTTGAAGCTCATATTCACAGTGTTACTAGAGCCTCTGATGGGCACTCACGTGGTAAAATTCCCTTAAAAAATGGAAGTTCTTATAAGAGAACTAATGGAATCATAAACCACAATTCCAAAGAGAACAAAAACAAACTAGATAATGTACCCTCTACATCAAATTCAGACTCAGTTGCTGCTGATGAAGACGTTATTTATCAGATCAAGTATGATGAgtctggacagttagtctatttagtttgtgtgtctgaataacctgaggtca #### Uhrf2_ID6376_7 --> 1 - 0 Original Alignment gTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGACTCAAGCTGAGTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGGAGGGACTGGGGCAGG ctcattttcttaccagttttaatgaagtcattttttttttttaattttaggTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTAGTAAAGGCTGGAGAGAGGCTCAAGCTGACCAAGAAAAAATTGAAGATGCCTTCAGCTAGCACTGAGAGTCGAAGGGACTGGGGCAGGgtaggtgaatccttacactattatcaccactttgtcagcagttgaaaaag Alignment from CESAR gTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGACTCAAGCTGAGTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGGAGGGACTGGGGCAGG ctcattttcttaccagttttaatgaagtcattttttttttttaattttaggTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTAGTAAAGGCTGGAGAGAGGCTCAAGCTGACCAAGAAAAAATTGAAGATGCCTTCAGCTAGCACTGAGAGTCGAAGGGACTGGGGCAGGgtaggtgaatccttacactattatcaccactttgtcagcagttgaaaaag Alignment from Spaln_aa2Genome GTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGACTCAAGCTGAGTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGGAGGGACTGGGGCAGG ctcattttcttaccagttttaatgaagtcattttttttttttaattttagGTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTAGTAAAGGCTGGAGAGAGGCTCAAGCTGACCAAGAAAAAATTGAAGATGCCTTCAGCTAGCACTGAGAGTCGAAGGGACTGGGGCAGGgtaggtgaatccttacactattatcaccactttgtcagcagttgaaaaag Alignment from Spaln_nt2Genome GTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGACTCAAGCTGAGTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGGAGGGACTGGGGCAGG ctcattttcttaccagttttaatgaagtcattttttttttttaattttagGTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTAGTAAAGGCTGGAGAGAGGCTCAAGCTGACCAAGAAAAAATTGAAGATGCCTTCAGCTAGCACTGAGAGTCGAAGGGACTGGGGCAGGgtaggtgaatccttacactattatcaccactttgtcagcagttgaaaaag Alignment from Pairagon GTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGACTCAAGCTGAGTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGGAGGGACTGGGGCAGG ctcattttcttaccagttttaatgaagtcattttttttttttaattttagGTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTAGTAAAGGCTGGAGAGAGGCTCAAGCTGACCAAGAAAAAATTGAAGATGCCTTCAGCTAGCACTGAGAGTCGAAGGGACTGGGGCAGGgtaggtgaatccttacactattatcaccactttgtcagcagttgaaaaag Alignment from Exonerate_protein2genome GTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGACTCAAGCTGAGTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGGAGGGACTGGGGCAGG ctcattttcttaccagttttaatgaagtcattttttttttttaattttagGTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTAGTAAAGGCTGGAGAGAGGCTCAAGCTGACCAAGAAAAAATTGAAGATGCCTTCAGCTAGCACTGAGAGTCGAAGGGACTGGGGCAGGgtaggtgaatccttacactattatcaccactttgtcagcagttgaaaaag Alignment from Exonerate_coding2genome GTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGACTCAAGCTGAGTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGGAGGGACTGGGGCAGG ctcattttcttaccagttttaatgaagtcattttttttttttaattttagGTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTAGTAAAGGCTGGAGAGAGGCTCAAGCTGACCAAGAAAAAATTGAAGATGCCTTCAGCTAGCACTGAGAGTCGAAGGGACTGGGGCAGGgtaggtgaatccttacactattatcaccactttgtcagcagttgaaaaag Alignment from GeneWise GTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGACTCAAGCTGAGTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGGAGGGACTGGGGCAGG ctcattttcttaccagttttaatgaagtcattttttttttttaattttagGTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTAGTAAAGGCTGGAGAGAGGCTCAAGCTGACCAAGAAAAAATTGAAGATGCCTTCAGCTAGCACTGAGAGTCGAAGGGACTGGGGCAGGgtaggtgaatccttacactattatcaccactttgtcagcagttgaaaaag #### Uhrf2_ID6378_9 --> 0 - 0 Original Alignment GTGAGCGAAGCAGGTGTTCATCGGCCACATGTTGGTGGAATTCATGGTCGCAGCAATGATGGGGCTTATTCTCTTGTCCTGGCTGGAGGATTTGAAGATGAAGTT gtcaactttcaagtccataccttatcaaccattatgccttctcctttaagGTGAGTGAGGCGGGGGTTCATCGACCACATGTCGGTGGAATTCATGGGCACAGTAATGATGGTGCCTATTCACTGGTCCTTGCTGGAGGATTTGAAGATGAAGTAgtaactaatggtgttagctcagcttttagggtgtaaaaacagcccttact Alignment from CESAR GTGAGCGAAGCAGGTGTTCATCGGCCACATGTTGGTGGAATTCATGGTCGCAGCAATGATGGGGCTTATTCTCTTGTCCTGGCTGGAGGATTTGAAGATGAAGTT gtcaactttcaagtccataccttatcaaccattatgccttctcctttaagGTGAGTGAGGCGGGGGTTCATCGACCACATGTCGGTGGAATTCATGGGCACAGTAATGATGGTGCCTATTCACTGGTCCTTGCTGGAGGATTTGAAGATGAAGTAgtaactaatggtgttagctcagcttttagggtgtaaaaacagcccttact Alignment from Spaln_aa2Genome GTGAGCGAAGCAGGTGTTCATCGGCCACATGTTGGTGGAATTCATGGTCGCAGCAATGATGGGGCTTATTCTCTTGTCCTGGCTGGAGGATTTGAAGATGAAGTT gtcaactttcaagtccataccttatcaaccattatgccttctcctttaagGTGAGTGAGGCGGGGGTTCATCGACCACATGTCGGTGGAATTCATGGGCACAGTAATGATGGTGCCTATTCACTGGTCCTTGCTGGAGGATTTGAAGATGAAGTAgtaactaatggtgttagctcagcttttagggtgtaaaaacagcccttact Alignment from Spaln_nt2Genome GTGAGCGAAGCAGGTGTTCATCGGCCACATGTTGGTGGAATTCATGGTCGCAGCAATGATGGGGCTTATTCTCTTGTCCTGGCTGGAGGATTTGAAGATGAAGTT gtcaactttcaagtccataccttatcaaccattatgccttctcctttaagGTGAGTGAGGCGGGGGTTCATCGACCACATGTCGGTGGAATTCATGGGCACAGTAATGATGGTGCCTATTCACTGGTCCTTGCTGGAGGATTTGAAGATGAAGTAgtaactaatggtgttagctcagcttttagggtgtaaaaacagcccttact Alignment from Pairagon GTGAGCGAAGCAGGTGTTCATCGGCCACATGTTGGTGGAATTCATGGTCGCAGCAATGATGGGGCTTATTCTCTTGTCCTGGCTGGAGGATTTGAAGATGAAGTT gtcaactttcaagtccataccttatcaaccattatgccttctcctttaagGTGAGTGAGGCGGGGGTTCATCGACCACATGTCGGTGGAATTCATGGGCACAGTAATGATGGTGCCTATTCACTGGTCCTTGCTGGAGGATTTGAAGATGAAGTAgtaactaatggtgttagctcagcttttagggtgtaaaaacagcccttact Alignment from Exonerate_protein2genome GTGAGCGAAGCAGGTGTTCATCGGCCACATGTTGGTGGAATTCATGGTCGCAGCAATGATGGGGCTTATTCTCTTGTCCTGGCTGGAGGATTTGAAGATGAAGTT gtcaactttcaagtccataccttatcaaccattatgccttctcctttaagGTGAGTGAGGCGGGGGTTCATCGACCACATGTCGGTGGAATTCATGGGCACAGTAATGATGGTGCCTATTCACTGGTCCTTGCTGGAGGATTTGAAGATGAAGTAgtaactaatggtgttagctcagcttttagggtgtaaaaacagcccttact Alignment from Exonerate_coding2genome GTGAGCGAAGCAGGTGTTCATCGGCCACATGTTGGTGGAATTCATGGTCGCAGCAATGATGGGGCTTATTCTCTTGTCCTGGCTGGAGGATTTGAAGATGAAGTT gtcaactttcaagtccataccttatcaaccattatgccttctcctttaagGTGAGTGAGGCGGGGGTTCATCGACCACATGTCGGTGGAATTCATGGGCACAGTAATGATGGTGCCTATTCACTGGTCCTTGCTGGAGGATTTGAAGATGAAGTAgtaactaatggtgttagctcagcttttagggtgtaaaaacagcccttact Alignment from GeneWise GTGAGCGAAGCAGGTGTTCATCGGCCACATGTTGGTGGAATTCATGGTCGCAGCAATGATGGGGCTTATTCTCTTGTCCTGGCTGGAGGATTTGAAGATGAAGTT gtcaactttcaagtccataccttatcaaccattatgccttctcctttaagGTGAGTGAGGCGGGGGTTCATCGACCACATGTCGGTGGAATTCATGGGCACAGTAATGATGGTGCCTATTCACTGGTCCTTGCTGGAGGATTTGAAGATGAAGTAgtaactaatggtgttagctcagcttttagggtgtaaaaacagcccttact #### Uhrf2_ID6384_14 --> 2 - 0 Original Alignment atGAGTGTCCAGGTGACTCCAAAGTGCTGAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACGCCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGCTGTGGGATGAAGTACTTGCATCTCTTGTAGAAGGACCG ctgcagtgaagaggtggggggctaataaccacgctgtgcttttcccaaagatGAATGCCCAGGTGACACCAAAGTGCTCAAGGCATCAGATTTAACAGATGAAGTAGAAGCTTTCCAGCTCACACCTGAGCAGCAGCGCCTAATTAGGGAAGACTGTCAGAATCAGAAGTTGTGGGATGAATTACTTGCATCTTACGTAGAAGGACCAgtaacttctaccttttataaattgcatatataataaggtctttttgactc Alignment from CESAR atGAGTGTCCAGGTGACTCCAAAGTGCTGAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACGCCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGCTGTGGGATGAAGTACTTGCATCTCTTGTAGAAGGACCG ctgcagtgaagaggtggggggctaataaccacgctgtgcttttcccaaagatGAATGCCCAGGTGACACCAAAGTGCTCAAGGCATCAGATTTAACAGATGAAGTAGAAGCTTTCCAGCTCACACCTGAGCAGCAGCGCCTAATTAGGGAAGACTGTCAGAATCAGAAGTTGTGGGATGAATTACTTGCATCTTACGTAGAAGGACCAgtaacttctaccttttataaattgcatatataataaggtctttttgactc Alignment from Spaln_aa2Genome ATGAGTGTCCAGGTGACTCCAAAGTGCTGAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACGCCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGCTGTGGGATGAAGTACTTGCATCTCTTGTAGAAGGACCG ctgcagtgaagaggtggggggctaataaccacgctgtgcttttcccaaagATGAATGCCCAGGTGACACCAAAGTGCTCAAGGCATCAGATTTAACAGATGAAGTAGAAGCTTTCCAGCTCACACCTGAGCAGCAGCGCCTAATTAGGGAAGACTGTCAGAATCAGAAGTTGTGGGATGAATTACTTGCATCTTACGTAGAAGGACCAgtaacttctaccttttataaattgcatatataataaggtctttttgactc Alignment from Spaln_nt2Genome ATGAGTGTCCAGGTGACTCCAAAGTGCTGAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACGCCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGCTGTGGGATGAAGTACTTGCATCTCTTGTAGAAGGACCG ctgcagtgaagaggtggggggctaataaccacgctgtgcttttcccaaagATGAATGCCCAGGTGACACCAAAGTGCTCAAGGCATCAGATTTAACAGATGAAGTAGAAGCTTTCCAGCTCACACCTGAGCAGCAGCGCCTAATTAGGGAAGACTGTCAGAATCAGAAGTTGTGGGATGAATTACTTGCATCTTACGTAGAAGGACCAgtaacttctaccttttataaattgcatatataataaggtctttttgactc Alignment from Pairagon ATGAGTGTCCAGGTGACTCCAAAGTGCTGAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACGCCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGCTGTGGGATGAAGTACTTGCATCTCTTGTAGAAGGACCG ctgcagtgaagaggtggggggctaataaccacgctgtgcttttcccaaagATGAATGCCCAGGTGACACCAAAGTGCTCAAGGCATCAGATTTAACAGATGAAGTAGAAGCTTTCCAGCTCACACCTGAGCAGCAGCGCCTAATTAGGGAAGACTGTCAGAATCAGAAGTTGTGGGATGAATTACTTGCATCTTACGTAGAAGGACCAgtaacttctaccttttataaattgcatatataataaggtctttttgactc Alignment from Exonerate_protein2genome ATGAGTGTCCAGGTGACTCCAAAGTGCTGAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACGCCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGCTGTGGGATGAAGTACTTGCATCTCTTGTAGAAGGACCG ctgcagtgaagaggtggggggctaataaccacgctgtgcttttcccaaagATGAATGCCCAGGTGACACCAAAGTGCTCAAGGCATCAGATTTAACAGATGAAGTAGAAGCTTTCCAGCTCACACCTGAGCAGCAGCGCCTAATTAGGGAAGACTGTCAGAATCAGAAGTTGTGGGATGAATTACTTGCATCTTACGTAGAAGGACCAgtaacttctaccttttataaattgcatatataataaggtctttttgactc Alignment from Exonerate_coding2genome ATGAGTGTCCAGGTGACTCCAAAGTGCTGAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACGCCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGCTGTGGGATGAAGTACTTGCATCTCTTGTAGAAGGACCG ctgcagtgaagaggtggggggctaataaccacgctgtgcttttcccaaagATGAATGCCCAGGTGACACCAAAGTGCTCAAGGCATCAGATTTAACAGATGAAGTAGAAGCTTTCCAGCTCACACCTGAGCAGCAGCGCCTAATTAGGGAAGACTGTCAGAATCAGAAGTTGTGGGATGAATTACTTGCATCTTACGTAGAAGGACCAgtaacttctaccttttataaattgcatatataataaggtctttttgactc Alignment from GeneWise ATGAGTGTCCAGGTGACTCCAAAGTGCTGAAGGCATCAGATTCAACAGATGCTGTAGAGGCTTTCCAGCTCACGCCTCAGCAGCAGCGCCTGATCAGAGAAGACTGTCAGAACCAGAAGCTGTGGGATGAAGTACTTGCATCTCTTGTAGAAGGACCG ctgcagtgaagaggtggggggctaataaccacgctgtgcttttcccaaagATGAATGCCCAGGTGACACCAAAGTGCTCAAGGCATCAGATTTAACAGATGAAGTAGAAGCTTTCCAGCTCACACCTGAGCAGCAGCGCCTAATTAGGGAAGACTGTCAGAATCAGAAGTTGTGGGATGAATTACTTGCATCTTACGTAGAAGGACCAgtaacttctaccttttataaattgcatatataataaggtctttttgactc #### Uhrf2_ID6385_15 --> 0 - 0 Original Alignment AATTTTCTGAAGAAATTGGAACAATCTTTTATGTGTGTGTGCTGCCAAGAACTAGTTTACCAGCCTGTCACAACTGAATGCTTTCACAACGTCTGTAAG tgtttaacactgggtaaatctaatcatgaatctgtcatatcgttttgtagAATTTCCTGAAAAAACTTGAACAGTCTTTTATGTGTGTGTGTTGCAAAGAACTTGTTTACCAGCCTGTCACAGCTGAATGCTTCCACAACATCTGTAAGgtatgattagcctgaggatccttttgaaggccttgcagaggggatatgct Alignment from CESAR AATTTTCTGAAGAAATTGGAACAATCTTTTATGTGTGTGTGCTGCCAAGAACTAGTTTACCAGCCTGTCACAACTGAATGCTTTCACAACGTCTGTAAG tgtttaacactgggtaaatctaatcatgaatctgtcatatcgttttgtagAATTTCCTGAAAAAACTTGAACAGTCTTTTATGTGTGTGTGTTGCAAAGAACTTGTTTACCAGCCTGTCACAGCTGAATGCTTCCACAACATCTGTAAGgtatgattagcctgaggatccttttgaaggccttgcagaggggatatgct Alignment from Spaln_aa2Genome AATTTTCTGAAGAAATTGGAACAATCTTTTATGTGTGTGTGCTGCCAAGAACTAGTTTACCAGCCTGTCACAACTGAATGCTTTCACAACGTCTGTAAG tgtttaacactgggtaaatctaatcatgaatctgtcatatcgttttgtagAATTTCCTGAAAAAACTTGAACAGTCTTTTATGTGTGTGTGTTGCAAAGAACTTGTTTACCAGCCTGTCACAGCTGAATGCTTCCACAACATCTGTAAGgtatgattagcctgaggatccttttgaaggccttgcagaggggatatgct Alignment from Spaln_nt2Genome AATTTTCTGAAGAAATTGGAACAATCTTTTATGTGTGTGTGCTGCCAAGAACTAGTTTACCAGCCTGTCACAACTGAATGCTTTCACAACGTCTGTAAG tgtttaacactgggtaaatctaatcatgaatctgtcatatcgttttgtagAATTTCCTGAAAAAACTTGAACAGTCTTTTATGTGTGTGTGTTGCAAAGAACTTGTTTACCAGCCTGTCACAGCTGAATGCTTCCACAACATCTGTAAGgtatgattagcctgaggatccttttgaaggccttgcagaggggatatgct Alignment from Pairagon AATTTTCTGAAGAAATTGGAACAATCTTTTATGTGTGTGTGCTGCCAAGAACTAGTTTACCAGCCTGTCACAACTGAATGCTTTCACAACGTCTGTAAG tgtttaacactgggtaaatctaatcatgaatctgtcatatcgttttgtagAATTTCCTGAAAAAACTTGAACAGTCTTTTATGTGTGTGTGTTGCAAAGAACTTGTTTACCAGCCTGTCACAGCTGAATGCTTCCACAACATCTGTAAGgtatgattagcctgaggatccttttgaaggccttgcagaggggatatgct Alignment from Exonerate_protein2genome AATTTTCTGAAGAAATTGGAACAATCTTTTATGTGTGTGTGCTGCCAAGAACTAGTTTACCAGCCTGTCACAACTGAATGCTTTCACAACGTCTGTAAG tgtttaacactgggtaaatctaatcatgaatctgtcatatcgttttgtagAATTTCCTGAAAAAACTTGAACAGTCTTTTATGTGTGTGTGTTGCAAAGAACTTGTTTACCAGCCTGTCACAGCTGAATGCTTCCACAACATCTGTAAGgtatgattagcctgaggatccttttgaaggccttgcagaggggatatgct Alignment from Exonerate_coding2genome AATTTTCTGAAGAAATTGGAACAATCTTTTATGTGTGTGTGCTGCCAAGAACTAGTTTACCAGCCTGTCACAACTGAATGCTTTCACAACGTCTGTAAG tgtttaacactgggtaaatctaatcatgaatctgtcatatcgttttgtagAATTTCCTGAAAAAACTTGAACAGTCTTTTATGTGTGTGTGTTGCAAAGAACTTGTTTACCAGCCTGTCACAGCTGAATGCTTCCACAACATCTGTAAGgtatgattagcctgaggatccttttgaaggccttgcagaggggatatgct Alignment from GeneWise AATTTTCTGAAGAAATTGGAACAATCTTTTATGTGTGTGTGCTGCCAAGAACTAGTTTACCAGCCTGTCACAACTGAATGCTTTCACAACGTCTGTAAG tgtttaacactgggtaaatctaatcatgaatctgtcatatcgttttgtagAATTTCCTGAAAAAACTTGAACAGTCTTTTATGTGTGTGTGTTGCAAAGAACTTGTTTACCAGCCTGTCACAGCTGAATGCTTCCACAACATCTGTAAGgtatgattagcctgaggatccttttgaaggccttgcagaggggatatgct #### Unc93b1_ID211_2 --> 0 - 1 Original Alignment TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGg ctagagtccaaagctggtgggccaccaccacttctgtctttgtttttcagCTTGAAGAGCTTGTGGGTGCATATCCCAACTACAATCAGGAGGAGGAAGAGCGTCACTACTACTGCCGTAAGCGTCTTGGTGTAGTCAAAAATGCATTGGCAGCCAGCCCAGGTGTCACTCTTACATATGGCATCTTCCTTggtaagattgagataacgactctctctgtattcgttagtattcactgattg Alignment from CESAR TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGg ctagagtccaaagctggtgggccaccaccacttctgtctttgtttttcagCTTGAAGAGCTTGTGGGTGCATATCCCAACTACAATCAGGAGGAGGAAGAGCGTCACTACTACTGCCGTAAGCGTCTTGGTGTAGTCAAAAATGCATTGGCAGCCAGCCCAGGTGTCACTCTTACATATGGCATCTTCCTTggtaagattgagataacgactctctctgtattcgttagtattcactgattg Alignment from Spaln_aa2Genome TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGG ctagagtccaaagctggtgggccaccaccacttctgtctttgtttttcagCTTGAAGAGCTTGTGGGTGCATATCCCAACTACAATCAGGAGGAGGAAGAGCGTCACTACTACTGCCGTAAGCGTCTTGGTGTAGTCAAAAATGCATTGGCAGCCAGCCCAGGTGTCACTCTTACATATGGCATCTTCCTTGgtaagattgagataacgactctctctgtattcgttagtattcactgattg Alignment from Spaln_nt2Genome TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGG ctagagtccaaagctggtgggccaccaccacttctgtctttgtttttcagCTTGAAGAGCTTGTGGGTGCATATCCCAACTACAATCAGGAGGAGGAAGAGCGTCACTACTACTGCCGTAAGCGTCTTGGTGTAGTCAAAAATGCATTGGCAGCCAGCCCAGGTGTCACTCTTACATATGGCATCTTCCTTGgtaagattgagataacgactctctctgtattcgttagtattcactgattg Alignment from Pairagon TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGG ctagagtccaaagctggtgggccaccaccacttctgtctttgtttttcagCTTGAAGAGCTTGTGGGTGCATATCCCAACTACAATCAGGAGGAGGAAGAGCGTCACTACTACTGCCGTAAGCGTCTTGGTGTAGTCAAAAATGCATTGGCAGCCAGCCCAGGTGTCACTCTTACATATGGCATCTTCCTTGgtaagattgagataacgactctctctgtattcgttagtattcactgattg Alignment from Exonerate_protein2genome TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGG ctagagtccaaagctggtgggccaccaccacttctgtctttgtttttcagCTTGAAGAGCTTGTGGGTGCATATCCCAACTACAATCAGGAGGAGGAAGAGCGTCACTACTACTGCCGTAAGCGTCTTGGTGTAGTCAAAAATGCATTGGCAGCCAGCCCAGGTGTCACTCTTACATATGGCATCTTCCTTGgtaagattgagataacgactctctctgtattcgttagtattcactgattg Alignment from Exonerate_coding2genome TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGG ctagagtccaaagctggtgggccaccaccacttctgtctttgtttttcagCTTGAAGAGCTTGTGGGTGCATATCCCAACTACAATCAGGAGGAGGAAGAGCGTCACTACTACTGCCGTAAGCGTCTTGGTGTAGTCAAAAATGCATTGGCAGCCAGCCCAGGTGTCACTCTTACATATGGCATCTTCCTTGgtaagattgagataacgactctctctgtattcgttagtattcactgattg Alignment from GeneWise TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGG ctagagtccaaagctggtgggccaccaccacttctgtctttgtttttcagCTTGAAGAGCTTGTGGGTGCATATCCCAACTACAATCAGGAGGAGGAAGAGCGTCACTACTACTGCCGTAAGCGTCTTGGTGTAGTCAAAAATGCATTGGCAGCCAGCCCAGGTGTCACTCTTACATATGGCATCTTCCTTGgtaagattgagataacgactctctctgtattcgttagtattcactgattg #### Unc93b1_ID212_3 --> 2 - 2 Original Alignment gcCTCCTGCAGATGCAACTGATCCTGCACTATGATGAGACCTACAGAGAGGTGAAGTATGGCAACATGGGGCTGCCGGACATCGATAGCAAGATGCTGATGGGTATCAACGTGACGCCTATCGCTGCCCTGCTCTACACACCTGTGCTCATCag aaccaagctgcaagctatttggataccaggactttcaacctttctttcagggCTGCTGCAGATGCAACTTATCCTGCACTATGATGAGGCCTACAGAGAGGTAAAGCATGGAAACATGGGGCTGCCAGACATAGATAGTAAGATGCTAATGGGTGTTAATGTAACACCAATTGCTGCCTTGCTCTACACACCTGTGTTCATCaggtgagcctgtttttgtaataaaaccagacttagttaccatgtgacaactg Alignment from CESAR gcCTCCTGCAGATGCAACTGATCCTGCACTATGATGAGACCTACAGAGAGGTGAAGTATGGCAACATGGGGCTGCCGGACATCGATAGCAAGATGCTGATGGGTATCAACGTGACGCCTATCGCTGCCCTGCTCTACACACCTGTGCTCATCag aaccaagctgcaagctatttggataccaggactttcaacctttctttcagggCTGCTGCAGATGCAACTTATCCTGCACTATGATGAGGCCTACAGAGAGGTAAAGCATGGAAACATGGGGCTGCCAGACATAGATAGTAAGATGCTAATGGGTGTTAATGTAACACCAATTGCTGCCTTGCTCTACACACCTGTGTTCATCaggtgagcctgtttttgtaataaaaccagacttagttaccatgtgacaactg Alignment from Spaln_aa2Genome GCCTCCTGCAGATGCAACTGATCCTGCACTATGATGAGACCTACAGAGAGGTGAAGTATGGCAACATGGGGCTGCCGGACATCGATAGCAAGATGCTGATGGGTATCAACGTGACGCCTATCGCTGCCCTGCTCTACACACCTGTGCTCATCAG aaccaagctgcaagctatttggataccaggactttcaacctttctttcagGGCTGCTGCAGATGCAACTTATCCTGCACTATGATGAGGCCTACAGAGAGGTAAAGCATGGAAACATGGGGCTGCCAGACATAGATAGTAAGATGCTAATGGGTGTTAATGTAACACCAATTGCTGCCTTGCTCTACACACCTGTGTTCATCAGgtgagcctgtttttgtaataaaaccagacttagttaccatgtgacaactg Alignment from Spaln_nt2Genome GCCTCCTGCAGATGCAACTGATCCTGCACTATGATGAGACCTACAGAGAGGTGAAGTATGGCAACATGGGGCTGCCGGACATCGATAGCAAGATGCTGATGGGTATCAACGTGACGCCTATCGCTGCCCTGCTCTACACACCTGTGCTCATCAG aaccaagctgcaagctatttggataccaggactttcaacctttctttcagGGCTGCTGCAGATGCAACTTATCCTGCACTATGATGAGGCCTACAGAGAGGTAAAGCATGGAAACATGGGGCTGCCAGACATAGATAGTAAGATGCTAATGGGTGTTAATGTAACACCAATTGCTGCCTTGCTCTACACACCTGTGTTCATCAGgtgagcctgtttttgtaataaaaccagacttagttaccatgtgacaactg Alignment from Pairagon GCCTCCTGCAGATGCAACTGATCCTGCACTATGATGAGACCTACAGAGAGGTGAAGTATGGCAACATGGGGCTGCCGGACATCGATAGCAAGATGCTGATGGGTATCAACGTGACGCCTATCGCTGCCCTGCTCTACACACCTGTGCTCATCAG aaccaagctgcaagctatttggataccaggactttcaacctttctttcagGGCTGCTGCAGATGCAACTTATCCTGCACTATGATGAGGCCTACAGAGAGGTAAAGCATGGAAACATGGGGCTGCCAGACATAGATAGTAAGATGCTAATGGGTGTTAATGTAACACCAATTGCTGCCTTGCTCTACACACCTGTGTTCATCAGgtgagcctgtttttgtaataaaaccagacttagttaccatgtgacaactg Alignment from Exonerate_protein2genome GCCTCCTGCAGATGCAACTGATCCTGCACTATGATGAGACCTACAGAGAGGTGAAGTATGGCAACATGGGGCTGCCGGACATCGATAGCAAGATGCTGATGGGTATCAACGTGACGCCTATCGCTGCCCTGCTCTACACACCTGTGCTCATCAG aaccaagctgcaagctatttggataccaggactttcaacctttctttcagGGCTGCTGCAGATGCAACTTATCCTGCACTATGATGAGGCCTACAGAGAGGTAAAGCATGGAAACATGGGGCTGCCAGACATAGATAGTAAGATGCTAATGGGTGTTAATGTAACACCAATTGCTGCCTTGCTCTACACACCTGTGTTCATCAGgtgagcctgtttttgtaataaaaccagacttagttaccatgtgacaactg Alignment from Exonerate_coding2genome GCCTCCTGCAGATGCAACTGATCCTGCACTATGATGAGACCTACAGAGAGGTGAAGTATGGCAACATGGGGCTGCCGGACATCGATAGCAAGATGCTGATGGGTATCAACGTGACGCCTATCGCTGCCCTGCTCTACACACCTGTGCTCATCAG aaccaagctgcaagctatttggataccaggactttcaacctttctttcagGGCTGCTGCAGATGCAACTTATCCTGCACTATGATGAGGCCTACAGAGAGGTAAAGCATGGAAACATGGGGCTGCCAGACATAGATAGTAAGATGCTAATGGGTGTTAATGTAACACCAATTGCTGCCTTGCTCTACACACCTGTGTTCATCAGgtgagcctgtttttgtaataaaaccagacttagttaccatgtgacaactg Alignment from GeneWise GCCTCCTGCAGATGCAACTGATCCTGCACTATGATGAGACCTACAGAGAGGTGAAGTATGGCAACATGGGGCTGCCGGACATCGATAGCAAGATGCTGATGGGTATCAACGTGACGCCTATCGCTGCCCTGCTCTACACACCTGTGCTCATCAG aaccaagctgcaagctatttggataccaggactttcaacctttctttcagGGCTGCTGCAGATGCAACTTATCCTGCACTATGATGAGGCCTACAGAGAGGTAAAGCATGGAAACATGGGGCTGCCAGACATAGATAGTAAGATGCTAATGGGTGTTAATGTAACACCAATTGCTGCCTTGCTCTACACACCTGTGTTCATCAGgtgagcctgtttttgtaataaaaccagacttagttaccatgtgacaactg #### Unc93b1_ID213_4 --> 1 - 2 Original Alignment gTTTTTTGGTACCAAGTGGATGATGTTCTTGGCTGTGGGCATCTATGCCCTCTTTGTCTCTACCAACTACTGGGAACGCTACTACACGCTGGTGCCCTCTGCTGTGGCTCTGGGCATGGCCATTGTGCCTCTGTGGGCCTCCATGGGCAACTATATCACCag atgagcctgggggttttgtaaaaatagtccaaaccctgtttcctaagcaggTTTTTTGGTACAAAGTGGATGATGTTCCTGGCTGTAGGGATCTATGCGCTCTTTGTTTTCACCAACTACTGGGAACGCTACTACACCCTTGAGCCTTCAGCTGTGGCCATAGCCATGGCCATTGTGCCCCTATGGGCATCCATGGGCACCCATATAACCaggtaagtatggacactgacagctatatgacttcattgcttggggggagagg Alignment from CESAR gTTTTTTGGTACCAAGTGGATGATGTTCTTGGCTGTGGGCATCTATGCCCTCTTTGTCTCTACCAACTACTGGGAACGCTACTACACGCTGGTGCCCTCTGCTGTGGCTCTGGGCATGGCCATTGTGCCTCTGTGGGCCTCCATGGGCAACTATATCACCag atgagcctgggggttttgtaaaaatagtccaaaccctgtttcctaagcaggTTTTTTGGTACAAAGTGGATGATGTTCCTGGCTGTAGGGATCTATGCGCTCTTTGTTTTCACCAACTACTGGGAACGCTACTACACCCTTGAGCCTTCAGCTGTGGCCATAGCCATGGCCATTGTGCCCCTATGGGCATCCATGGGCACCCATATAACCaggtaagtatggacactgacagctatatgacttcattgcttggggggagagg Alignment from Spaln_aa2Genome GTTTTTTGGTACCAAGTGGATGATGTTCTTGGCTGTGGGCATCTATGCCCTCTTTGTCTCTACCAACTACTGGGAACGCTACTACACGCTGGTGCCCTCTGCTGTGGCTCTGGGCATGGCCATTGTGCCTCTGTGGGCCTCCATGGGCAACTATATCACCAG atgagcctgggggttttgtaaaaatagtccaaaccctgtttcctaagcagGTTTTTTGGTACAAAGTGGATGATGTTCCTGGCTGTAGGGATCTATGCGCTCTTTGTTTTCACCAACTACTGGGAACGCTACTACACCCTTGAGCCTTCAGCTGTGGCCATAGCCATGGCCATTGTGCCCCTATGGGCATCCATGGGCACCCATATAACCAGgtaagtatggacactgacagctatatgacttcattgcttggggggagagg Alignment from Spaln_nt2Genome GTTTTTTGGTACCAAGTGGATGATGTTCTTGGCTGTGGGCATCTATGCCCTCTTTGTCTCTACCAACTACTGGGAACGCTACTACACGCTGGTGCCCTCTGCTGTGGCTCTGGGCATGGCCATTGTGCCTCTGTGGGCCTCCATGGGCAACTATATCACCAG atgagcctgggggttttgtaaaaatagtccaaaccctgtttcctaagcagGTTTTTTGGTACAAAGTGGATGATGTTCCTGGCTGTAGGGATCTATGCGCTCTTTGTTTTCACCAACTACTGGGAACGCTACTACACCCTTGAGCCTTCAGCTGTGGCCATAGCCATGGCCATTGTGCCCCTATGGGCATCCATGGGCACCCATATAACCAGgtaagtatggacactgacagctatatgacttcattgcttggggggagagg Alignment from Pairagon GTTTTTTGGTACCAAGTGGATGATGTTCTTGGCTGTGGGCATCTATGCCCTCTTTGTCTCTACCAACTACTGGGAACGCTACTACACGCTGGTGCCCTCTGCTGTGGCTCTGGGCATGGCCATTGTGCCTCTGTGGGCCTCCATGGGCAACTATATCACCAG atgagcctgggggttttgtaaaaatagtccaaaccctgtttcctaagcagGTTTTTTGGTACAAAGTGGATGATGTTCCTGGCTGTAGGGATCTATGCGCTCTTTGTTTTCACCAACTACTGGGAACGCTACTACACCCTTGAGCCTTCAGCTGTGGCCATAGCCATGGCCATTGTGCCCCTATGGGCATCCATGGGCACCCATATAACCAGgtaagtatggacactgacagctatatgacttcattgcttggggggagagg Alignment from Exonerate_protein2genome GTTTTTTGGTACCAAGTGGATGATGTTCTTGGCTGTGGGCATCTATGCCCTCTTTGTCTCTACCAACTACTGGGAACGCTACTACACGCTGGTGCCCTCTGCTGTGGCTCTGGGCATGGCCATTGTGCCTCTGTGGGCCTCCATGGGCAACTATATCACCAG atgagcctgggggttttgtaaaaatagtccaaaccctgtttcctaagcagGTTTTTTGGTACAAAGTGGATGATGTTCCTGGCTGTAGGGATCTATGCGCTCTTTGTTTTCACCAACTACTGGGAACGCTACTACACCCTTGAGCCTTCAGCTGTGGCCATAGCCATGGCCATTGTGCCCCTATGGGCATCCATGGGCACCCATATAACCAGgtaagtatggacactgacagctatatgacttcattgcttggggggagagg Alignment from Exonerate_coding2genome GTTTTTTGGTACCAAGTGGATGATGTTCTTGGCTGTGGGCATCTATGCCCTCTTTGTCTCTACCAACTACTGGGAACGCTACTACACGCTGGTGCCCTCTGCTGTGGCTCTGGGCATGGCCATTGTGCCTCTGTGGGCCTCCATGGGCAACTATATCACCAG atgagcctgggggttttgtaaaaatagtccaaaccctgtttcctaagcagGTTTTTTGGTACAAAGTGGATGATGTTCCTGGCTGTAGGGATCTATGCGCTCTTTGTTTTCACCAACTACTGGGAACGCTACTACACCCTTGAGCCTTCAGCTGTGGCCATAGCCATGGCCATTGTGCCCCTATGGGCATCCATGGGCACCCATATAACCAGgtaagtatggacactgacagctatatgacttcattgcttggggggagagg Alignment from GeneWise -AGGTTTTTTGGTACCAAGTGGATGATGTTCTTGGCTGTGGGCATCTATGCCCTCTTTGTCTCTACCAACTACTGGGAACGCTACTACACGCTGGTGCCCTCTGCTGTGGCTCTGGGCATGGCCATTGTGCCTCTGTGGGCCTCCATGGGCAACTATATCACCAG atgagcctgggggttttgtaaaaatagtccaaaccctgtttcctaagCAGGTTTTTTGGTACAAAGTGGATGATGTTCCTGGCTGTAGGGATCTATGCGCTCTTTGTTTTCACCAACTACTGGGAACGCTACTACACCCTTGAGCCTTCAGCTGTGGCCATAGCCATGGCCATTGTGCCCCTATGGGCATCCATGGGCACCCATATAACCAGgtaagtatggacactgacagctatatgacttcattgcttggggggagagg #### Unc93b1_ID216_7 --> 2 - 0 Original Alignment gtACTAAGAGCCAAGGCATTCTGAATGGCTTCAACAAGACGGTCCTTCGGACGCTGCCGCGCAGCAAAAACCTTATTGTTGTAGAGAGCGTGCTCATGGCGGTGGCCTTCTTGGCCATGCTGATG cagtgcaatttagtctcttggtaccatattatgaccactgctctctccaggtACTCAGAGCCAAGGTATCCTAAATGGCTTTAACAATACACTTCTCTGTACATTGCCACGCAGCAAAAACCTTATTATCGTTGCAAGTGTACTCATGACTGTGGCCTTCTTAACCATCCTGATGgtaagtctaaaggggataataaattgcaggagagtctaccctgtaggctt Alignment from CESAR gtACTAAGAGCCAAGGCATTCTGAATGGCTTCAACAAGACGGTCCTTCGGACGCTGCCGCGCAGCAAAAACCTTATTGTTGTAGAGAGCGTGCTCATGGCGGTGGCCTTCTTGGCCATGCTGATG cagtgcaatttagtctcttggtaccatattatgaccactgctctctccaggtACTCAGAGCCAAGGTATCCTAAATGGCTTTAACAATACACTTCTCTGTACATTGCCACGCAGCAAAAACCTTATTATCGTTGCAAGTGTACTCATGACTGTGGCCTTCTTAACCATCCTGATGgtaagtctaaaggggataataaattgcaggagagtctaccctgtaggctt Alignment from Spaln_aa2Genome GTACTAAGAGCCAAGGCATTCTGAATGGCTTCAACAAGACGGTCCTTCGGACGCTGCCGCGCAGCAAAAACCTTATTGTTGTAGAGAGCGTGCTCATGGCGGTGGCCTTCTTGGCCATGCTGATG cagtgcaatttagtctcttggtaccatattatgaccactgctctctccagGTACTCAGAGCCAAGGTATCCTAAATGGCTTTAACAATACACTTCTCTGTACATTGCCACGCAGCAAAAACCTTATTATCGTTGCAAGTGTACTCATGACTGTGGCCTTCTTAACCATCCTGATGgtaagtctaaaggggataataaattgcaggagagtctaccctgtaggctt Alignment from Spaln_nt2Genome GTACTAAGAGCCAAGGCATTCTGAATGGCTTCAACAAGACGGTCCTTCGGACGCTGCCGCGCAGCAAAAACCTTATTGTTGTAGAGAGCGTGCTCATGGCGGTGGCCTTCTTGGCCATGCTGATG cagtgcaatttagtctcttggtaccatattatgaccactgctctctccagGTACTCAGAGCCAAGGTATCCTAAATGGCTTTAACAATACACTTCTCTGTACATTGCCACGCAGCAAAAACCTTATTATCGTTGCAAGTGTACTCATGACTGTGGCCTTCTTAACCATCCTGATGgtaagtctaaaggggataataaattgcaggagagtctaccctgtaggctt Alignment from Pairagon GTACTAAGAGCCAAGGCATTCTGAATGGCTTCAACAAGACGGTCCTTCGGACGCTGCCGCGCAGCAAAAACCTTATTGTTGTAGAGAGCGTGCTCATGGCGGTGGCCTTCTTGGCCATGCTGATG cagtgcaatttagtctcttggtaccatattatgaccactgctctctccagGTACTCAGAGCCAAGGTATCCTAAATGGCTTTAACAATACACTTCTCTGTACATTGCCACGCAGCAAAAACCTTATTATCGTTGCAAGTGTACTCATGACTGTGGCCTTCTTAACCATCCTGATGgtaagtctaaaggggataataaattgcaggagagtctaccctgtaggctt Alignment from Exonerate_protein2genome GTACTAAGAGCCAAGGCATTCTGAATGGCTTCAACAAGACGGTCCTTCGGACGCTGCCGCGCAGCAAAAACCTTATTGTTGTAGAGAGCGTGCTCATGGCGGTGGCCTTCTTGGCCATGCTGATG cagtgcaatttagtctcttggtaccatattatgaccactgctctctccagGTACTCAGAGCCAAGGTATCCTAAATGGCTTTAACAATACACTTCTCTGTACATTGCCACGCAGCAAAAACCTTATTATCGTTGCAAGTGTACTCATGACTGTGGCCTTCTTAACCATCCTGATGgtaagtctaaaggggataataaattgcaggagagtctaccctgtaggctt Alignment from Exonerate_coding2genome GTACTAAGAGCCAAGGCATTCTGAATGGCTTCAACAAGACGGTCCTTCGGACGCTGCCGCGCAGCAAAAACCTTATTGTTGTAGAGAGCGTGCTCATGGCGGTGGCCTTCTTGGCCATGCTGATG cagtgcaatttagtctcttggtaccatattatgaccactgctctctccagGTACTCAGAGCCAAGGTATCCTAAATGGCTTTAACAATACACTTCTCTGTACATTGCCACGCAGCAAAAACCTTATTATCGTTGCAAGTGTACTCATGACTGTGGCCTTCTTAACCATCCTGATGgtaagtctaaaggggataataaattgcaggagagtctaccctgtaggctt Alignment from GeneWise GTACTAAGAGCCAAGGCATTCTGAATGGCTTCAACAAGACGGTCCTTCGGACGCTGCCGCGCAGCAAAAACCTTATTGTTGTAGAGAGCGTGCTCATGGCGGTGGCCTTCTTGGCCATGCTGATG cagtgcaatttagtctcttggtaccatattatgaccactgctctctccagGTACTCAGAGCCAAGGTATCCTAAATGGCTTTAACAATACACTTCTCTGTACATTGCCACGCAGCAAAAACCTTATTATCGTTGCAAGTGTACTCATGACTGTGGCCTTCTTAACCATCCTGATGgtaagtctaaaggggataataaattgcaggagagtctaccctgtaggctt #### Vldlr_ID5804_4 --> 2 - 1 Original Alignment atATGAGAACATGCCGCATAAATGAAATCAGCTGTGGCGCCCGTTCTACTCAGTGTATCCCCGTGTCCTGGAGATGCGATGGTGAAAATGATTGTGACAATGGAGAAGATGAAGAAAACTGTg gtgactagattcatgtagttttcagagcagagtttccttttgatttctagacATGAGGACATGCTATATAAATGAAATTAGCTGCGGTGCACGTTCCGCTCAGTGTATACCTATCTCCTGGCGATGTGATGGGAAGAATGATTGTGAC---CGAGAAGAAGAGCAAAATTGTggtacctatatgtgttgaaataagcctgagaagctgacatatgatccatgc Alignment from CESAR atATGAGAACATGCCGCATAAATGAAATCAGCTGTGGCGCCCGTTCTACTCAGTGTATCCCCGTGTCCTGGAGATGCGATGGTGAAAATGATTGTGACAATGGAGAAGATGAAGAAAACTGTg gtgactagattcatgtagttttcagagcagagtttccttttgatttctagacATGAGGACATGCTATATAAATGAAATTAGCTGCGGTGCACGTTCCGCTCAGTGTATACCTATCTCCTGGCGATGTGATGGGAAGAATGATTGTGAC---CGAGAAGAAGAGCAAAATTGTggtacctatatgtgttgaaataagcctgagaagctgacatatgatccatgc Alignment from Spaln_aa2Genome ATATGAGAACATGCCGCATAAATGAAATCAGCTGTGGCGCCCGTTCTACTCAGTGTATCCCCGTGTCCTGGAGATGCGATGGTGAAAATGATTGTGACAATGGAGAAGATGAAGAAAACTGTG gtgactagattcatgtagttttcagagcagagtttccttttgatttctagACATGAGGACATGCTATATAAATGAAATTAGCTGCGGTGCACGTTCCGCTCAGTGTATACCTATCTCCTGGCGATGTGATGGGAAGAATGATTGTGAC---CGAGAAGAAGAGCAAAATTGTGgtacctatatgtgttgaaataagcctgagaagctgacatatgatccatgc Alignment from Spaln_nt2Genome ATATGAGAACATGCCGCATAAATGAAATCAGCTGTGGCGCCCGTTCTACTCAGTGTATCCCCGTGTCCTGGAGATGCGATGGTGAAAATGATTGTGACAATGGAGAAGATGAAGAAAACTGTG gtgactagattcatgtagttttcagagcagagtttccttttgatttctagACATGAGGACATGCTATATAAATGAAATTAGCTGCGGTGCACGTTCCGCTCAGTGTATACCTATCTCCTGGCGATGTGATGGGAAGAATGATTGTGAC---CGAGAAGAAGAGCAAAATTGTGgtacctatatgtgttgaaataagcctgagaagctgacatatgatccatgc Alignment from Pairagon ATATGAGAACATGCCGCATAAATGAAATCAGCTGTGGCGCCCGTTCTACTCAGTGTATCCCCGTGTCCTGGAGATGCGATGGTGAAAATGATTGTGACAATGGAGAAGATGAAGAAAACTGTG gtgactagattcatgtagttttcagagcagagtttccttttgatttctagACATGAGGACATGCTATATAAATGAAATTAGCTGCGGTGCACGTTCCGCTCAGTGTATACCTATCTCCTGGCGATGTGATGGGAAGAATGATTGTGACC---GAGAAGAAGAGCAAAATTGTGgtacctatatgtgttgaaataagcctgagaagctgacatatgatccatgc Alignment from Exonerate_protein2genome ATATGAGAACATGCCGCATAAATGAAATCAGCTGTGGCGCCCGTTCTACTCAGTGTATCCCCGTGTCCTGGAGATGCGATGGTGAAAATGATTGTGACAATGGAGAAGATGAAGAAAACTGTG gtgactagattcatgtagttttcagagcagagtttccttttgatttctagACATGAGGACATGCTATATAAATGAAATTAGCTGCGGTGCACGTTCCGCTCAGTGTATACCTATCTCCTGGCGATGTGATGGGAAGAATGATTGTGACCGA---GAAGAAGAGCAAAATTGTGgtacctatatgtgttgaaataagcctgagaagctgacatatgatccatgc Alignment from Exonerate_coding2genome ATATGAGAACATGCCGCATAAATGAAATCAGCTGTGGCGCCCGTTCTACTCAGTGTATCCCCGTGTCCTGGAGATGCGATGGTGAAAATGATTGTGACAATGGAGAAGATGAAGAAAACTGTG gtgactagattcatgtagttttcagagcagagtttccttttgatttctagACATGAGGACATGCTATATAAATGAAATTAGCTGCGGTGCACGTTCCGCTCAGTGTATACCTATCTCCTGGCGATGTGATGGGAAGAATGATTGTGACCGA---GAAGAAGAGCAAAATTGTGgtacctatatgtgttgaaataagcctgagaagctgacatatgatccatgc Alignment from GeneWise ATATGAGAACATGCCGCATAAATGAAATCAGCTGTGGCGCCCGTTCTACTCAGTGTATCCCCGTGTCCTGGAGATGCGATGGTGAAAATGATTGTGACAATGGAGAAGATGAAGAAAACTGTG gtgactagattcatgtagttttcagagcagagtttccttttgatttctagACATGAGGACATGCTATATAAATGAAATTAGCTGCGGTGCACGTTCCGCTCAGTGTATACCTATCTCCTGGCGATGTGATGGGAAGAATGATTGTGACCGA---GAAGAAGAGCAAAATTGTGgtacctatatgtgttgaaataagcctgagaagctgacatatgatccatgc #### Vldlr_ID5807_6 --> 2 - 1 Original Alignment ctTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACg tgggcacttcactctgactcctggtctcccatgtccccttttgtttccagccTCTCAAACCTGCCGACCTGACCATTTTGAATGTGAGGATGGTACTTGCATCCATGGTAGCAGACAATGCAATGGCATCCAGGCTTGTGTTGATGGGTCTGATGAACTAAACTGTAGAAACagtatgtgtctctttttgattggcaggtctgtgcctttgccagaagagtga Alignment from CESAR ctTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACg tgggcacttcactctgactcctggtctcccatgtccccttttgtttccagccTCTCAAACCTGCCGACCTGACCATTTTGAATGTGAGGATGGTACTTGCATCCATGGTAGCAGACAATGCAATGGCATCCAGGCTTGTGTTGATGGGTCTGATGAACTAAACTGTAGAAACagtatgtgtctctttttgattggcaggtctgtgcctttgccagaagagtga Alignment from Spaln_aa2Genome CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACG tgggcacttcactctgactcctggtctcccatgtccccttttgtttccagCCTCTCAAACCTGCCGACCTGACCATTTTGAATGTGAGGATGGTACTTGCATCCATGGTAGCAGACAATGCAATGGCATCCAGGCTTGTGTTGATGGGTCTGATGAACTAAACTGTAGAAACAgtatgtgtctctttttgattggcaggtctgtgcctttgccagaagagtga Alignment from Spaln_nt2Genome CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACG tgggcacttcactctgactcctggtctcccatgtccccttttgtttccagCCTCTCAAACCTGCCGACCTGACCATTTTGAATGTGAGGATGGTACTTGCATCCATGGTAGCAGACAATGCAATGGCATCCAGGCTTGTGTTGATGGGTCTGATGAACTAAACTGTAGAAACAgtatgtgtctctttttgattggcaggtctgtgcctttgccagaagagtga Alignment from Pairagon CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACG tgggcacttcactctgactcctggtctcccatgtccccttttgtttccagCCTCTCAAACCTGCCGACCTGACCATTTTGAATGTGAGGATGGTACTTGCATCCATGGTAGCAGACAATGCAATGGCATCCAGGCTTGTGTTGATGGGTCTGATGAACTAAACTGTAGAAACAgtatgtgtctctttttgattggcaggtctgtgcctttgccagaagagtga Alignment from Exonerate_protein2genome CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACG tgggcacttcactctgactcctggtctcccatgtccccttttgtttccagCCTCTCAAACCTGCCGACCTGACCATTTTGAATGTGAGGATGGTACTTGCATCCATGGTAGCAGACAATGCAATGGCATCCAGGCTTGTGTTGATGGGTCTGATGAACTAAACTGTAGAAACAgtatgtgtctctttttgattggcaggtctgtgcctttgccagaagagtga Alignment from Exonerate_coding2genome CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACG tgggcacttcactctgactcctggtctcccatgtccccttttgtttccagCCTCTCAAACCTGCCGACCTGACCATTTTGAATGTGAGGATGGTACTTGCATCCATGGTAGCAGACAATGCAATGGCATCCAGGCTTGTGTTGATGGGTCTGATGAACTAAACTGTAGAAACAgtatgtgtctctttttgattggcaggtctgtgcctttgccagaagagtga Alignment from GeneWise -------------------------------------------------CCTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACG TGGGCACTTCACTCTGACTCCTGGTCTCCCATGTCCCCTTTTGTTTCCAGCCTCTCAAACCTGCCGACCTGACCATTTTGAATGTGAGGATGGTACTTGCATCCATGGTAGCAGACAATGCAATGGCATCCAGGCTTGTGTTGATGGGTCTGATGAACTAAACTGTAGAAACAgtatgtgtctctttttgattggcaggtctgtgcctttgccagaagagtga #### Vldlr_ID5808_7 --> 2 - 1 Original Alignment tcAATCAGTGCCTGGGCCCTGGAAAGTTCAAGTGCAGAAGCGGGGAATGCATAGACATGAGCAAAGTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCc tgccagaagagtgatagcttcagactttgctgccttttctcctgtcatagttAATCAGTGCTTGGGCCCCGGAAAATTCAAGTGCAGGAGTGGTGAATGCATAGACATGAGCAAAGTATGTGATCAAGAACAAGACTGCAGAGATTGGAGTGATGAACCCCTGAAGGAATGCcgtcagtgagaggaatcaaaatttttttaaaggtgtggatcccgaccgact Alignment from CESAR tcAATCAGTGCCTGGGCCCTGGAAAGTTCAAGTGCAGAAGCGGGGAATGCATAGACATGAGCAAAGTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCc tgccagaagagtgatagcttcagactttgctgccttttctcctgtcatagttAATCAGTGCTTGGGCCCCGGAAAATTCAAGTGCAGGAGTGGTGAATGCATAGACATGAGCAAAGTATGTGATCAAGAACAAGACTGCAGAGATTGGAGTGATGAACCCCTGAAGGAATGCcgtcagtgagaggaatcaaaatttttttaaaggtgtggatcccgaccgact Alignment from Spaln_aa2Genome TCAATCAGTGCCTGGGCCCTGGAAAGTTCAAGTGCAGAAGCGGGGAATGCATAGACATGAGCAAAGTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCC tgccagaagagtgatagcttcagactttgctgccttttctcctgtcatagTTAATCAGTGCTTGGGCCCCGGAAAATTCAAGTGCAGGAGTGGTGAATGCATAGACATGAGCAAAGTATGTGATCAAGAACAAGACTGCAGAGATTGGAGTGATGAACCCCTGAAGGAATGCCgtcagtgagaggaatcaaaatttttttaaaggtgtggatcccgaccgact Alignment from Spaln_nt2Genome TCAATCAGTGCCTGGGCCCTGGAAAGTTCAAGTGCAGAAGCGGGGAATGCATAGACATGAGCAAAGTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCC tgccagaagagtgatagcttcagactttgctgccttttctcctgtcatagTTAATCAGTGCTTGGGCCCCGGAAAATTCAAGTGCAGGAGTGGTGAATGCATAGACATGAGCAAAGTATGTGATCAAGAACAAGACTGCAGAGATTGGAGTGATGAACCCCTGAAGGAATGCCgtcagtgagaggaatcaaaatttttttaaaggtgtggatcccgaccgact Alignment from Pairagon TCAATCAGTGCCTGGGCCCTGGAAAGTTCAAGTGCAGAAGCGGGGAATGCATAGACATGAGCAAAGTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCC tgccagaagagtgatagcttcagactttgctgccttttctcctgtcatagTTAATCAGTGCTTGGGCCCCGGAAAATTCAAGTGCAGGAGTGGTGAATGCATAGACATGAGCAAAGTATGTGATCAAGAACAAGACTGCAGAGATTGGAGTGATGAACCCCTGAAGGAATGCCgtcagtgagaggaatcaaaatttttttaaaggtgtggatcccgaccgact Alignment from Exonerate_protein2genome TCAATCAGTGCCTGGGCCCTGGAAAGTTCAAGTGCAGAAGCGGGGAATGCATAGACATGAGCAAAGTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCC tgccagaagagtgatagcttcagactttgctgccttttctcctgtcatagTTAATCAGTGCTTGGGCCCCGGAAAATTCAAGTGCAGGAGTGGTGAATGCATAGACATGAGCAAAGTATGTGATCAAGAACAAGACTGCAGAGATTGGAGTGATGAACCCCTGAAGGAATGCCgtcagtgagaggaatcaaaatttttttaaaggtgtggatcccgaccgact Alignment from Exonerate_coding2genome TCAATCAGTGCCTGGGCCCTGGAAAGTTCAAGTGCAGAAGCGGGGAATGCATAGACATGAGCAAAGTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCC tgccagaagagtgatagcttcagactttgctgccttttctcctgtcatagTTAATCAGTGCTTGGGCCCCGGAAAATTCAAGTGCAGGAGTGGTGAATGCATAGACATGAGCAAAGTATGTGATCAAGAACAAGACTGCAGAGATTGGAGTGATGAACCCCTGAAGGAATGCCgtcagtgagaggaatcaaaatttttttaaaggtgtggatcccgaccgact Alignment from GeneWise TCAATCAGTGCCTGGGCCCTGGAAAGTTCAAGTGCAGAAGCGGGGAATGCATAGACATGAGCAAAGTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCC tgccagaagagtgatagcttcagactttgctgccttttctcctgtcatagTTAATCAGTGCTTGGGCCCCGGAAAATTCAAGTGCAGGAGTGGTGAATGCATAGACATGAGCAAAGTATGTGATCAAGAACAAGACTGCAGAGATTGGAGTGATGAACCCCTGAAGGAATGCCgtcagtgagaggaatcaaaatttttttaaaggtgtggatcccgaccgact #### Vldlr_ID5809_8 --> 2 - 1 Original Alignment atATCAACGAATGCCTGGTCAATAATGGTGGCTGTTCCCATATCTGCAAAGACCTAGTTATAGGTTATGAGTGTGATTGTGCAGCTGGGTTTGAACTGATAGATAGGAAAACCTGTGGAg gggtcaacgtaaacagtcaattttatggtcgttctccgccgttcacttagatATCAAAGAATGCCTGGTAAATAATGGTGGTTGTTCCCATATCTGCAAAGACTTAGTTATAGGTTATGAGTGTGACTGTGCAGCTGGGTTTGAACTGATAGATAGGAAAACCTGTGGAggtgagaatacatagatgatggacatccatcaaatggatatagaaaacaag Alignment from CESAR atATCAACGAATGCCTGGTCAATAATGGTGGCTGTTCCCATATCTGCAAAGACCTAGTTATAGGTTATGAGTGTGATTGTGCAGCTGGGTTTGAACTGATAGATAGGAAAACCTGTGGAg gggtcaacgtaaacagtcaattttatggtcgttctccgccgttcacttagatATCAAAGAATGCCTGGTAAATAATGGTGGTTGTTCCCATATCTGCAAAGACTTAGTTATAGGTTATGAGTGTGACTGTGCAGCTGGGTTTGAACTGATAGATAGGAAAACCTGTGGAggtgagaatacatagatgatggacatccatcaaatggatatagaaaacaag Alignment from Spaln_aa2Genome ATATCAACGAATGCCTGGTCAATAATGGTGGCTGTTCCCATATCTGCAAAGACCTAGTTATAGGTTATGAGTGTGATTGTGCAGCTGGGTTTGAACTGATAGATAGGAAAACCTGTGGAG gggtcaacgtaaacagtcaattttatggtcgttctccgccgttcacttagATATCAAAGAATGCCTGGTAAATAATGGTGGTTGTTCCCATATCTGCAAAGACTTAGTTATAGGTTATGAGTGTGACTGTGCAGCTGGGTTTGAACTGATAGATAGGAAAACCTGTGGAGgtgagaatacatagatgatggacatccatcaaatggatatagaaaacaag Alignment from Spaln_nt2Genome ATATCAACGAATGCCTGGTCAATAATGGTGGCTGTTCCCATATCTGCAAAGACCTAGTTATAGGTTATGAGTGTGATTGTGCAGCTGGGTTTGAACTGATAGATAGGAAAACCTGTGGAG gggtcaacgtaaacagtcaattttatggtcgttctccgccgttcacttagATATCAAAGAATGCCTGGTAAATAATGGTGGTTGTTCCCATATCTGCAAAGACTTAGTTATAGGTTATGAGTGTGACTGTGCAGCTGGGTTTGAACTGATAGATAGGAAAACCTGTGGAGgtgagaatacatagatgatggacatccatcaaatggatatagaaaacaag Alignment from Pairagon ATATCAACGAATGCCTGGTCAATAATGGTGGCTGTTCCCATATCTGCAAAGACCTAGTTATAGGTTATGAGTGTGATTGTGCAGCTGGGTTTGAACTGATAGATAGGAAAACCTGTGGAG gggtcaacgtaaacagtcaattttatggtcgttctccgccgttcacttagATATCAAAGAATGCCTGGTAAATAATGGTGGTTGTTCCCATATCTGCAAAGACTTAGTTATAGGTTATGAGTGTGACTGTGCAGCTGGGTTTGAACTGATAGATAGGAAAACCTGTGGAGgtgagaatacatagatgatggacatccatcaaatggatatagaaaacaag Alignment from Exonerate_protein2genome ATATCAACGAATGCCTGGTCAATAATGGTGGCTGTTCCCATATCTGCAAAGACCTAGTTATAGGTTATGAGTGTGATTGTGCAGCTGGGTTTGAACTGATAGATAGGAAAACCTGTGGAG gggtcaacgtaaacagtcaattttatggtcgttctccgccgttcacttagATATCAAAGAATGCCTGGTAAATAATGGTGGTTGTTCCCATATCTGCAAAGACTTAGTTATAGGTTATGAGTGTGACTGTGCAGCTGGGTTTGAACTGATAGATAGGAAAACCTGTGGAGgtgagaatacatagatgatggacatccatcaaatggatatagaaaacaag Alignment from Exonerate_coding2genome ATATCAACGAATGCCTGGTCAATAATGGTGGCTGTTCCCATATCTGCAAAGACCTAGTTATAGGTTATGAGTGTGATTGTGCAGCTGGGTTTGAACTGATAGATAGGAAAACCTGTGGAG gggtcaacgtaaacagtcaattttatggtcgttctccgccgttcacttagATATCAAAGAATGCCTGGTAAATAATGGTGGTTGTTCCCATATCTGCAAAGACTTAGTTATAGGTTATGAGTGTGACTGTGCAGCTGGGTTTGAACTGATAGATAGGAAAACCTGTGGAGgtgagaatacatagatgatggacatccatcaaatggatatagaaaacaag Alignment from GeneWise ATATCAACGAATGCCTGGTCAATAATGGTGGCTGTTCCCATATCTGCAAAGACCTAGTTATAGGTTATGAGTGTGATTGTGCAGCTGGGTTTGAACTGATAGATAGGAAAACCTGTGGAG gggtcaacgtaaacagtcaattttatggtcgttctccgccgttcacttagATATCAAAGAATGCCTGGTAAATAATGGTGGTTGTTCCCATATCTGCAAAGACTTAGTTATAGGTTATGAGTGTGACTGTGCAGCTGGGTTTGAACTGATAGATAGGAAAACCTGTGGAGgtgagaatacatagatgatggacatccatcaaatggatatagaaaacaag #### Vldlr_ID5812_11 --> 1 - 2 Original Alignment tGCCTCAATTGATGACAAGGTTGGTAGACATTTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCGGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGAGCCAAGAGGAAGTTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGATCCGTTGTCGgg taacaatggcgacaggggagacttttaatcagtttctttgtctctcgcagtGCCTCAGTTGATGACAAGGTTGGTAGACATTTTAAAATGATTGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGACGCAGCTTCTAAGACTATTTCAGTGGCTACCCTAGGTGGGGCCAAGAGGAAATTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCAATAGCTGTGGATCTGTTGTCGgggttcgtgcttggattagagtacttttaaaaatgagctgtactttcaagaa Alignment from CESAR tGCCTCAATTGATGACAAGGTTGGTAGACATTTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCGGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGAGCCAAGAGGAAGTTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGATCCGTTGTCGgg taacaatggcgacaggggagacttttaatcagtttctttgtctctcgcagtGCCTCAGTTGATGACAAGGTTGGTAGACATTTTAAAATGATTGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGACGCAGCTTCTAAGACTATTTCAGTGGCTACCCTAGGTGGGGCCAAGAGGAAATTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCAATAGCTGTGGATCTGTTGTCGgggttcgtgcttggattagagtacttttaaaaatgagctgtactttcaagaa Alignment from Spaln_aa2Genome TGCCTCAATTGATGACAAGGTTGGTAGACATTTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCGGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGAGCCAAGAGGAAGTTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGATCCGTTGTCGGG taacaatggcgacaggggagacttttaatcagtttctttgtctctcgcagTGCCTCAGTTGATGACAAGGTTGGTAGACATTTTAAAATGATTGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGACGCAGCTTCTAAGACTATTTCAGTGGCTACCCTAGGTGGGGCCAAGAGGAAATTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCAATAGCTGTGGATCTGTTGTCGGGgttcgtgcttggattagagtacttttaaaaatgagctgtactttcaagaa Alignment from Spaln_nt2Genome TGCCTCAATTGATGACAAGGTTGGTAGACATTTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCGGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGAGCCAAGAGGAAGTTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGATCCGTTGTCGGG taacaatggcgacaggggagacttttaatcagtttctttgtctctcgcagTGCCTCAGTTGATGACAAGGTTGGTAGACATTTTAAAATGATTGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGACGCAGCTTCTAAGACTATTTCAGTGGCTACCCTAGGTGGGGCCAAGAGGAAATTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCAATAGCTGTGGATCTGTTGTCGGGgttcgtgcttggattagagtacttttaaaaatgagctgtactttcaagaa Alignment from Pairagon TGCCTCAATTGATGACAAGGTTGGTAGACATTTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCGGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGAGCCAAGAGGAAGTTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGATCCGTTGTCGGG taacaatggcgacaggggagacttttaatcagtttctttgtctctcgcagTGCCTCAGTTGATGACAAGGTTGGTAGACATTTTAAAATGATTGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGACGCAGCTTCTAAGACTATTTCAGTGGCTACCCTAGGTGGGGCCAAGAGGAAATTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCAATAGCTGTGGATCTGTTGTCGGGgttcgtgcttggattagagtacttttaaaaatgagctgtactttcaagaa Alignment from Exonerate_protein2genome TGCCTCAATTGATGACAAGGTTGGTAGACATTTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCGGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGAGCCAAGAGGAAGTTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGATCCGTTGTCGGG taacaatggcgacaggggagacttttaatcagtttctttgtctctcgcagTGCCTCAGTTGATGACAAGGTTGGTAGACATTTTAAAATGATTGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGACGCAGCTTCTAAGACTATTTCAGTGGCTACCCTAGGTGGGGCCAAGAGGAAATTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCAATAGCTGTGGATCTGTTGTCGGGgttcgtgcttggattagagtacttttaaaaatgagctgtactttcaagaa Alignment from Exonerate_coding2genome TGCCTCAATTGATGACAAGGTTGGTAGACATTTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCGGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGAGCCAAGAGGAAGTTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGATCCGTTGTCGGG taacaatggcgacaggggagacttttaatcagtttctttgtctctcgcagTGCCTCAGTTGATGACAAGGTTGGTAGACATTTTAAAATGATTGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGACGCAGCTTCTAAGACTATTTCAGTGGCTACCCTAGGTGGGGCCAAGAGGAAATTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCAATAGCTGTGGATCTGTTGTCGGGgttcgtgcttggattagagtacttttaaaaatgagctgtactttcaagaa Alignment from GeneWise TGCCTCAATTGATGACAAGGTTGGTAGACATTTTAAAATGATCGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGATGCGGCTTCTAAGACTATTTCAGTAGCTACCCTAGACGGAGCCAAGAGGAAGTTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCCATAGCTGTGGATCCGTTGTCGGG taacaatggcgacaggggagacttttaatcagtttctttgtctctcgcagTGCCTCAGTTGATGACAAGGTTGGTAGACATTTTAAAATGATTGACAATGTCTATAATCCTGCAGCCATTGCTGTTGATTGGGTGTACAAGACCATCTACTGGACTGACGCAGCTTCTAAGACTATTTCAGTGGCTACCCTAGGTGGGGCCAAGAGGAAATTCCTGTTTAATTCTGACTTGCGAGAGCCTGCCTCAATAGCTGTGGATCTGTTGTCGGGgttcgtgcttggattagagtacttttaaaaatgagctgtactttcaagaa #### Vldlr_ID5813_12 --> 1 - 1 Original Alignment cTTTGTTTACTGGTCAGACTGGGGCGAGCCAGCTAAAATAGAAAAAGCAGGAATGAATGGATTTGATAGACGTCCTCTGGTGACGGAGGACATCCAATGGCCTAATGGAATTACACTCg aaacatataccaaagaagtccaccttttttagtttgatgctttattctagaTTTGTTTTTTGGTCAGATTGGGGTCAGCCAGCCAGAATTGAAAAAGCAATAATGAATGGATTTGATAGA---------GTGACAGAGGATATTAAGTGGCCTAATGGAATTACA---ggtaaatatgttcttccttgctatgcattaatcaagcacccctatacctct Alignment from CESAR cTTTGTTTACTGGTCAGACTGGGGCGAGCCAGCTAAAATAGAAAAAGCAGGAATGAATGGATTTGATAGACGTCCTCTGGTGACGGAGGACATCCAATGGCCTAATGGAATTACACTCg aaacatataccaaagaagtccaccttttttagtttgatgctttattctagaTTTGTTTTTTGGTCAGATTGGGGTCAGCCAGCCAGAATTGAAAAAGCAATAATGAATGGATTTGATAGA---------GTGACAGAGGATATTAAGTGGCCTAATGGAATTACA---ggtaaatatgttcttccttgctatgcattaatcaagcacccctatacctct Alignment from Spaln_aa2Genome CTTTGTTTACTGGTCAGACTGGGGCGAGCCAGCTAAAATAGAAAAAGCAGGAATGAATGGATTTGATAGACGTCCTCTGGTGACGGAGGACATCCAATGGCCTAATGGAATTACA- aaacatataccaaagaagtccaccttttttagtttgatgctttattctagATTTGTTTTTTGGTCAGATTGGGGTCAGCCAGCCAGAATTGAAAAAGCAATAATGAATGGATTTGATAGA---------GTGACAGAGGATATTAAGTGGCCTAATGGAATTACAGgtaaatatgttcttccttgctatgcattaatcaagcacccctatacctct Alignment from Spaln_nt2Genome CTTTGTTTACTGGTCAGACTGGGGCGAGCCAGCTAAAATAGAAAAAGCAGGAATGAATGGATTTGATAGACGTCCTCTGGTGACGGAGGACATCCAATGGCCTAATGGAATTACAC aaacatataccaaagaagtccaccttttttagtttgatgctttattctagATTTGTTTTTTGGTCAGATTGGGGTCAGCCAGCCAGAATTGAAAAAGCAATAATGAATGGATTTGATAGA---------GTGACAGAGGATATTAAGTGGCCTAATGGAATTACAGgtaaatatgttcttccttgctatgcattaatcaagcacccctatacctct Alignment from Pairagon CTTTGTTTACTGGTCAGACTGGGGCGAGCCAGCTAAAATAGAAAAAGCAGGAATGAATGGATTTGATAGACGTCCTCTGGTGACGGAGGACATCCAATGGCCTAATGGAATTACACTCG aaacatataccaaagaagtccaccttttttagtttgatgctttattctagATTTGTTTTTTGGTCAGATTGGGGTCAGCCAGCCAGAATTGAAAAAGCAATAATGAATGGATTTGATAGA---------GTGACAGAGGATATTAAGTGGCCTAATGGAATTACA---Ggtaaatatgttcttccttgctatgcattaatcaagcacccctatacctct Alignment from Exonerate_protein2genome CTTTGTTTACTGGTCAGACTGGGGCGAGCCAGCTAAAATAGAAAAAGCAGGAATGAATGGATTTGATAGACGTCCTCTGGTGACGGAGGACATCCAATGGCCTAATGGAATTACACTCG aaacatataccaaagaagtccaccttttttagtttgatgctttattctagATTTGTTTTTTGGTCAGATTGGGGTCAGCCAGCCAGAATTGAAAAAGCAATAATGAATGGATTTGATAGA---------GTGACAGAGGATATTAAGTGGCCTAATGGAATTACA---Ggtaaatatgttcttccttgctatgcattaatcaagcacccctatacctct Alignment from Exonerate_coding2genome CTTTGTTTACTGGTCAGACTGGGGCGAGCCAGCTAAAATAGAAAAAGCAGGAATGAATGGATTTGATAGACGTCCTCTGGTGACGGAGGACATCCAATGGCCTAATGGAATTACACTCG aaacatataccaaagaagtccaccttttttagtttgatgctttattctagATTTGTTTTTTGGTCAGATTGGGGTCAGCCAGCCAGAATTGAAAAAGCAATAATGAATGGATTTGATAGA---------GTGACAGAGGATATTAAGTGGCCTAATGGAATTACA---Ggtaaatatgttcttccttgctatgcattaatcaagcacccctatacctct Alignment from GeneWise CTTTGTTTACTGGTCAGACTGGGGCGAGCCAGCTAAAATAGAAAAAGCAGGAATGAATGGATTTGATAGACGTCCTCTGGTGACGGAGGACATCCAATGGCCTAATGGAATTACAC aaacatataccaaagaagtccaccttttttagtttgatgctttattctagATTTGTTTTTTGGTCAGATTGGGGTCAGCCAGCCAGAATTGAAAAAGCAATAATGAATGGATTTGATAGA---------GTGACAGAGGATATTAAGTGGCCTAATGGAATTACAGgtaaatatgttcttccttgctatgcattaatcaagcacccctatacctct #### Vldlr_ID5815_14 --> 0 - 1 Original Alignment GATCGCGTCTACTGGATAGATGGAGAAAATGAAGCAGTGTACGGTGCCAATAAATTCACTGGGTCAGAGCTGGCCACTCTAGTGAATAATCTCAATGATGCCCAAGACATCATTGTCTACCATGAACTCGTCCAGCCGTCAg acttaatgtgttgaatactgtcatagatttctcatacttttgattttcagGATCGTGTCTACTGGATAGATGGAGAAAACGAAGGAGTGTATGGTGCCAATAAGTTCTCTGGGTCAGAGCTGGCCACTCTTGTGAATAATTTAAATGATGCCCAAGATATCATTGTCTACCATGAACTTGTCCAGCCATCAggtgagttgggagaaacccaacttgaaccatcacaccctctctaatcctac Alignment from CESAR GATCGCGTCTACTGGATAGATGGAGAAAATGAAGCAGTGTACGGTGCCAATAAATTCACTGGGTCAGAGCTGGCCACTCTAGTGAATAATCTCAATGATGCCCAAGACATCATTGTCTACCATGAACTCGTCCAGCCGTCAg acttaatgtgttgaatactgtcatagatttctcatacttttgattttcagGATCGTGTCTACTGGATAGATGGAGAAAACGAAGGAGTGTATGGTGCCAATAAGTTCTCTGGGTCAGAGCTGGCCACTCTTGTGAATAATTTAAATGATGCCCAAGATATCATTGTCTACCATGAACTTGTCCAGCCATCAggtgagttgggagaaacccaacttgaaccatcacaccctctctaatcctac Alignment from Spaln_aa2Genome GATCGCGTCTACTGGATAGATGGAGAAAATGAAGCAGTGTACGGTGCCAATAAATTCACTGGGTCAGAGCTGGCCACTCTAGTGAATAATCTCAATGATGCCCAAGACATCATTGTCTACCATGAACTCGTCCAGCCGTCAG acttaatgtgttgaatactgtcatagatttctcatacttttgattttcagGATCGTGTCTACTGGATAGATGGAGAAAACGAAGGAGTGTATGGTGCCAATAAGTTCTCTGGGTCAGAGCTGGCCACTCTTGTGAATAATTTAAATGATGCCCAAGATATCATTGTCTACCATGAACTTGTCCAGCCATCAGgtgagttgggagaaacccaacttgaaccatcacaccctctctaatcctac Alignment from Spaln_nt2Genome GATCGCGTCTACTGGATAGATGGAGAAAATGAAGCAGTGTACGGTGCCAATAAATTCACTGGGTCAGAGCTGGCCACTCTAGTGAATAATCTCAATGATGCCCAAGACATCATTGTCTACCATGAACTCGTCCAGCCGTCAG acttaatgtgttgaatactgtcatagatttctcatacttttgattttcagGATCGTGTCTACTGGATAGATGGAGAAAACGAAGGAGTGTATGGTGCCAATAAGTTCTCTGGGTCAGAGCTGGCCACTCTTGTGAATAATTTAAATGATGCCCAAGATATCATTGTCTACCATGAACTTGTCCAGCCATCAGgtgagttgggagaaacccaacttgaaccatcacaccctctctaatcctac Alignment from Pairagon GATCGCGTCTACTGGATAGATGGAGAAAATGAAGCAGTGTACGGTGCCAATAAATTCACTGGGTCAGAGCTGGCCACTCTAGTGAATAATCTCAATGATGCCCAAGACATCATTGTCTACCATGAACTCGTCCAGCCGTCAG acttaatgtgttgaatactgtcatagatttctcatacttttgattttcagGATCGTGTCTACTGGATAGATGGAGAAAACGAAGGAGTGTATGGTGCCAATAAGTTCTCTGGGTCAGAGCTGGCCACTCTTGTGAATAATTTAAATGATGCCCAAGATATCATTGTCTACCATGAACTTGTCCAGCCATCAGgtgagttgggagaaacccaacttgaaccatcacaccctctctaatcctac Alignment from Exonerate_protein2genome GATCGCGTCTACTGGATAGATGGAGAAAATGAAGCAGTGTACGGTGCCAATAAATTCACTGGGTCAGAGCTGGCCACTCTAGTGAATAATCTCAATGATGCCCAAGACATCATTGTCTACCATGAACTCGTCCAGCCGTCAG acttaatgtgttgaatactgtcatagatttctcatacttttgattttcagGATCGTGTCTACTGGATAGATGGAGAAAACGAAGGAGTGTATGGTGCCAATAAGTTCTCTGGGTCAGAGCTGGCCACTCTTGTGAATAATTTAAATGATGCCCAAGATATCATTGTCTACCATGAACTTGTCCAGCCATCAGgtgagttgggagaaacccaacttgaaccatcacaccctctctaatcctac Alignment from Exonerate_coding2genome GATCGCGTCTACTGGATAGATGGAGAAAATGAAGCAGTGTACGGTGCCAATAAATTCACTGGGTCAGAGCTGGCCACTCTAGTGAATAATCTCAATGATGCCCAAGACATCATTGTCTACCATGAACTCGTCCAGCCGTCAG acttaatgtgttgaatactgtcatagatttctcatacttttgattttcagGATCGTGTCTACTGGATAGATGGAGAAAACGAAGGAGTGTATGGTGCCAATAAGTTCTCTGGGTCAGAGCTGGCCACTCTTGTGAATAATTTAAATGATGCCCAAGATATCATTGTCTACCATGAACTTGTCCAGCCATCAGgtgagttgggagaaacccaacttgaaccatcacaccctctctaatcctac Alignment from GeneWise GATCGCGTCTACTGGATAGATGGAGAAAATGAAGCAGTGTACGGTGCCAATAAATTCACTGGGTCAGAGCTGGCCACTCTAGTGAATAATCTCAATGATGCCCAAGACATCATTGTCTACCATGAACTCGTCCAGCCGTCAG acttaatgtgttgaatactgtcatagatttctcatacttttgattttcagGATCGTGTCTACTGGATAGATGGAGAAAACGAAGGAGTGTATGGTGCCAATAAGTTCTCTGGGTCAGAGCTGGCCACTCTTGTGAATAATTTAAATGATGCCCAAGATATCATTGTCTACCATGAACTTGTCCAGCCATCAGgtgagttgggagaaacccaacttgaaccatcacaccctctctaatcctac #### Vldlr_ID5819_18 --> 2 - 0 Original Alignment tgCTCTTAGTGATGGCAGCAGTAGGTGGCTACTTGATGTGGAGGAATTGGCAACATAAAAACATGAAAAGCATGAACTTTGACAATCCTGTGTACTTGAAGACCACTGAAGAGGACCTGTCGATAGACATTGGTAGACACAGCGCTTCTGTAGGACACACATACCCAGCA ggtctatatatattacacactgtttaccgctgtccttccctcttggacagtgCTCTTGGTAATGGCAGCAGTAGGTGGCTACTTGATGTGGAGGAACTGGCAACATAAAAACATGAAGAGCATGAACTTTGACAATCCTGCGTACTTGAAGACCACTGAAGAGGACCTAGCAATAGACATTGGTAGGCACAGTGCTTCAGTGGTCCATACATATCCAGCAgtaaaatcaccaaacggggtgtccataggatgatactggtttttgtaaga Alignment from CESAR tgCTCTTAGTGATGGCAGCAGTAGGTGGCTACTTGATGTGGAGGAATTGGCAACATAAAAACATGAAAAGCATGAACTTTGACAATCCTGTGTACTTGAAGACCACTGAAGAGGACCTGTCGATAGACATTGGTAGACACAGCGCTTCTGTAGGACACACATACCCAGCA ggtctatatatattacacactgtttaccgctgtccttccctcttggacagtgCTCTTGGTAATGGCAGCAGTAGGTGGCTACTTGATGTGGAGGAACTGGCAACATAAAAACATGAAGAGCATGAACTTTGACAATCCTGCGTACTTGAAGACCACTGAAGAGGACCTAGCAATAGACATTGGTAGGCACAGTGCTTCAGTGGTCCATACATATCCAGCAgtaaaatcaccaaacggggtgtccataggatgatactggtttttgtaaga Alignment from Spaln_aa2Genome TGCTCTTAGTGATGGCAGCAGTAGGTGGCTACTTGATGTGGAGGAATTGGCAACATAAAAACATGAAAAGCATGAACTTTGACAATCCTGTGTACTTGAAGACCACTGAAGAGGACCTGTCGATAGACATTGGTAGACACAGCGCTTCTGTAGGACACACATACCCAGCA ggtctatatatattacacactgtttaccgctgtccttccctcttggacagTGCTCTTGGTAATGGCAGCAGTAGGTGGCTACTTGATGTGGAGGAACTGGCAACATAAAAACATGAAGAGCATGAACTTTGACAATCCTGCGTACTTGAAGACCACTGAAGAGGACCTAGCAATAGACATTGGTAGGCACAGTGCTTCAGTGGTCCATACATATCCAGCAgtaaaatcaccaaacggggtgtccataggatgatactggtttttgtaaga Alignment from Spaln_nt2Genome TGCTCTTAGTGATGGCAGCAGTAGGTGGCTACTTGATGTGGAGGAATTGGCAACATAAAAACATGAAAAGCATGAACTTTGACAATCCTGTGTACTTGAAGACCACTGAAGAGGACCTGTCGATAGACATTGGTAGACACAGCGCTTCTGTAGGACACACATACCCAGCA ggtctatatatattacacactgtttaccgctgtccttccctcttggacagTGCTCTTGGTAATGGCAGCAGTAGGTGGCTACTTGATGTGGAGGAACTGGCAACATAAAAACATGAAGAGCATGAACTTTGACAATCCTGCGTACTTGAAGACCACTGAAGAGGACCTAGCAATAGACATTGGTAGGCACAGTGCTTCAGTGGTCCATACATATCCAGCAgtaaaatcaccaaacggggtgtccataggatgatactggtttttgtaaga Alignment from Pairagon TGCTCTTAGTGATGGCAGCAGTAGGTGGCTACTTGATGTGGAGGAATTGGCAACATAAAAACATGAAAAGCATGAACTTTGACAATCCTGTGTACTTGAAGACCACTGAAGAGGACCTGTCGATAGACATTGGTAGACACAGCGCTTCTGTAGGACACACATACCCAGCA ggtctatatatattacacactgtttaccgctgtccttccctcttggacagTGCTCTTGGTAATGGCAGCAGTAGGTGGCTACTTGATGTGGAGGAACTGGCAACATAAAAACATGAAGAGCATGAACTTTGACAATCCTGCGTACTTGAAGACCACTGAAGAGGACCTAGCAATAGACATTGGTAGGCACAGTGCTTCAGTGGTCCATACATATCCAGCAgtaaaatcaccaaacggggtgtccataggatgatactggtttttgtaaga Alignment from Exonerate_protein2genome TGCTCTTAGTGATGGCAGCAGTAGGTGGCTACTTGATGTGGAGGAATTGGCAACATAAAAACATGAAAAGCATGAACTTTGACAATCCTGTGTACTTGAAGACCACTGAAGAGGACCTGTCGATAGACATTGGTAGACACAGCGCTTCTGTAGGACACACATACCCAGCA ggtctatatatattacacactgtttaccgctgtccttccctcttggacagTGCTCTTGGTAATGGCAGCAGTAGGTGGCTACTTGATGTGGAGGAACTGGCAACATAAAAACATGAAGAGCATGAACTTTGACAATCCTGCGTACTTGAAGACCACTGAAGAGGACCTAGCAATAGACATTGGTAGGCACAGTGCTTCAGTGGTCCATACATATCCAGCAgtaaaatcaccaaacggggtgtccataggatgatactggtttttgtaaga Alignment from Exonerate_coding2genome TGCTCTTAGTGATGGCAGCAGTAGGTGGCTACTTGATGTGGAGGAATTGGCAACATAAAAACATGAAAAGCATGAACTTTGACAATCCTGTGTACTTGAAGACCACTGAAGAGGACCTGTCGATAGACATTGGTAGACACAGCGCTTCTGTAGGACACACATACCCAGCA ggtctatatatattacacactgtttaccgctgtccttccctcttggacagTGCTCTTGGTAATGGCAGCAGTAGGTGGCTACTTGATGTGGAGGAACTGGCAACATAAAAACATGAAGAGCATGAACTTTGACAATCCTGCGTACTTGAAGACCACTGAAGAGGACCTAGCAATAGACATTGGTAGGCACAGTGCTTCAGTGGTCCATACATATCCAGCAgtaaaatcaccaaacggggtgtccataggatgatactggtttttgtaaga Alignment from GeneWise TGCTCTTAGTGATGGCAGCAGTAGGTGGCTACTTGATGTGGAGGAATTGGCAACATAAAAACATGAAAAGCATGAACTTTGACAATCCTGTGTACTTGAAGACCACTGAAGAGGACCTGTCGATAGACATTGGTAGACACAGCGCTTCTGTAGGACACACATACCCAGCAATATCAGTTGTAAGCACAGATGATGATCTGGCT ggtctatatatattacacactgtttaccgctgtccttccctcttggacagTGCTCTTGGTAATGGCAGCAGTAGGTGGCTACTTGATGTGGAGGAACTGGCAACATAAAAACATGAAGAGCATGAACTTTGACAATCCTGCGTACTTGAAGACCACTGAAGAGGACCTAGCAATAGACATTGGTAGGCACAGTGCTTCAGTGGTCCATACATATCCAGCA---------GTAAAATCACCAAACGGGGTGTCCataggatgatactggtt #### Vps13a_ID4052_71 --> 0 - 0 Original Alignment GAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGG cctacaaatttctaaacacaaaagaatatacttttgatattttgttctagGAACGGGTGAAGTCTGTATTCCATGCTAAAGAATTTGGAAAAATTGTTAACTTCAAGACTCCAGAAGATGCTAGGgtaagtatacatagttatcaatatgcagtgcatcagatctcacatcttac Alignment from CESAR GAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGG cctacaaatttctaaacacaaaagaatatacttttgatattttgttctagGAACGGGTGAAGTCTGTATTCCATGCTAAAGAATTTGGAAAAATTGTTAACTTCAAGACTCCAGAAGATGCTAGGgtaagtatacatagttatcaatatgcagtgcatcagatctcacatcttac Alignment from Spaln_aa2Genome GAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGG cctacaaatttctaaacacaaaagaatatacttttgatattttgttctagGAACGGGTGAAGTCTGTATTCCATGCTAAAGAATTTGGAAAAATTGTTAACTTCAAGACTCCAGAAGATGCTAGGgtaagtatacatagttatcaatatgcagtgcatcagatctcacatcttac Alignment from Spaln_nt2Genome GAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGG cctacaaatttctaaacacaaaagaatatacttttgatattttgttctagGAACGGGTGAAGTCTGTATTCCATGCTAAAGAATTTGGAAAAATTGTTAACTTCAAGACTCCAGAAGATGCTAGGgtaagtatacatagttatcaatatgcagtgcatcagatctcacatcttac Alignment from Pairagon GAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGG cctacaaatttctaaacacaaaagaatatacttttgatattttgttctagGAACGGGTGAAGTCTGTATTCCATGCTAAAGAATTTGGAAAAATTGTTAACTTCAAGACTCCAGAAGATGCTAGGgtaagtatacatagttatcaatatgcagtgcatcagatctcacatcttac Alignment from Exonerate_protein2genome GAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGG cctacaaatttctaaacacaaaagaatatacttttgatattttgttctagGAACGGGTGAAGTCTGTATTCCATGCTAAAGAATTTGGAAAAATTGTTAACTTCAAGACTCCAGAAGATGCTAGGgtaagtatacatagttatcaatatgcagtgcatcagatctcacatcttac Alignment from Exonerate_coding2genome GAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGG cctacaaatttctaaacacaaaagaatatacttttgatattttgttctagGAACGGGTGAAGTCTGTATTCCATGCTAAAGAATTTGGAAAAATTGTTAACTTCAAGACTCCAGAAGATGCTAGGgtaagtatacatagttatcaatatgcagtgcatcagatctcacatcttac Alignment from GeneWise GAACGGGTGAAGTCTGTATTCCATGCCAAAGAATTTGGAAAAATCGTTAACTTCAAGACTCCAGAAGATGCTAGG cctacaaatttctaaacacaaaagaatatacttttgatattttgttctagGAACGGGTGAAGTCTGTATTCCATGCTAAAGAATTTGGAAAAATTGTTAACTTCAAGACTCCAGAAGATGCTAGGgtaagtatacatagttatcaatatgcagtgcatcagatctcacatcttac #### Vps13a_ID4056_67 --> 2 - 2 Original Alignment gtGCTCAAAAGGAAGGAGCAGCAGGTTTCTTCAAAGGTGTTGGAAAAGGTTTAGTTGGAGCAGTGACAAGGCCAACGGGTGGCATCATAGACATGGCCAGCAGTACCTTTCAGGGAATCAAAag tatcattcctatttgggcatggttgctctccttcccaccactgtcctcaggaCCACAAAACGAAGGAGCAGCAGGCTTGTTCAAAGGTGTTGGGAAAGGTTTT---GGGGCAGTGACAAGGCCAACAGGTGTCATCATAGACATGGCCAGCAGTTCCTTTCAAGGAGTCAAAaggtgagtcatctatatgatcagccaatggacaaagtcacagtccactattg Alignment from CESAR gtGCTCAAAAGGAAGGAGCAGCAGGTTTCTTCAAAGGTGTTGGAAAAGGTTTAGTTGGAGCAGTGACAAGGCCAACGGGTGGCATCATAGACATGGCCAGCAGTACCTTTCAGGGAATCAAAag tatcattcctatttgggcatggttgctctccttcccaccactgtcctcaggaCCACAAAACGAAGGAGCAGCAGGCTTGTTCAAAGGTGTTGGGAAAGGTTTT---GGGGCAGTGACAAGGCCAACAGGTGTCATCATAGACATGGCCAGCAGTTCCTTTCAAGGAGTCAAAaggtgagtcatctatatgatcagccaatggacaaagtcacagtccactattg Alignment from Spaln_aa2Genome GTGCTCAAAAGGAAGGAGCAGCAGGTTTCTTCAAAGGTGTTGGAAAAGGTTTAGTTGGAGCAGTGACAAGGCCAACGGGTGGCATCATAGACATGGCCAGCAGTACCTTTCAGGGAATCAAAAG tatcattcctatttgggcatggttgctctccttcccaccactgtcctcagGACCACAAAACGAAGGAGCAGCAGGCTTGTTCAAAGGTGTTGGGAAAGGTTTT---GGGGCAGTGACAAGGCCAACAGGTGTCATCATAGACATGGCCAGCAGTTCCTTTCAAGGAGTCAAAAGgtgagtcatctatatgatcagccaatggacaaagtcacagtccactattg Alignment from Spaln_nt2Genome GTGCTCAAAAGGAAGGAGCAGCAGGTTTCTTCAAAGGTGTTGGAAAAGGTTTAGTTGGAGCAGTGACAAGGCCAACGGGTGGCATCATAGACATGGCCAGCAGTACCTTTCAGGGAATCAAAAG tatcattcctatttgggcatggttgctctccttcccaccactgtcctcagGACCACAAAACGAAGGAGCAGCAGGCTTGTTCAAAGGTGTTGGGAAAGGTT---TTGGGGCAGTGACAAGGCCAACAGGTGTCATCATAGACATGGCCAGCAGTTCCTTTCAAGGAGTCAAAAGgtgagtcatctatatgatcagccaatggacaaagtcacagtccactattg Alignment from Pairagon GTGCTCAAAAGGAAGGAGCAGCAGGTTTCTTCAAAGGTGTTGGAAAAGGTTTAGTTGGAGCAGTGACAAGGCCAACGGGTGGCATCATAGACATGGCCAGCAGTACCTTTCAGGGAATCAAAAG tatcattcctatttgggcatggttgctctccttcccaccactgtcctcagGACCACAAAACGAAGGAGCAGCAGGCTTGTTCAAAGGTGTTGGGAAAGGTT---TTGGGGCAGTGACAAGGCCAACAGGTGTCATCATAGACATGGCCAGCAGTTCCTTTCAAGGAGTCAAAAGgtgagtcatctatatgatcagccaatggacaaagtcacagtccactattg Alignment from Exonerate_protein2genome GTGCTCAAAAGGAAGGAGCAGCAGGTTTCTTCAAAGGTGTTGGAAAAGGTTTAGTTGGAGCAGTGACAAGGCCAACGGGTGGCATCATAGACATGGCCAGCAGTACCTTTCAGGGAATCAAAAG tatcattcctatttgggcatggttgctctccttcccaccactgtcctcagGACCACAAAACGAAGGAGCAGCAGGCTTGTTCAAAGGTGTTGGGAAAGGTTTT---GGGGCAGTGACAAGGCCAACAGGTGTCATCATAGACATGGCCAGCAGTTCCTTTCAAGGAGTCAAAAGgtgagtcatctatatgatcagccaatggacaaagtcacagtccactattg Alignment from Exonerate_coding2genome GTGCTCAAAAGGAAGGAGCAGCAGGTTTCTTCAAAGGTGTTGGAAAAGGTTTAGTTGGAGCAGTGACAAGGCCAACGGGTGGCATCATAGACATGGCCAGCAGTACCTTTCAGGGAATCAAAAG tatcattcctatttgggcatggttgctctccttcccaccactgtcctcagGACCACAAAACGAAGGAGCAGCAGGCTTGTTCAAAGGTGTTGGGAAAGGTTTT---GGGGCAGTGACAAGGCCAACAGGTGTCATCATAGACATGGCCAGCAGTTCCTTTCAAGGAGTCAAAAGgtgagtcatctatatgatcagccaatggacaaagtcacagtccactattg Alignment from GeneWise GTGCTCAAAAGGAAGGAGCAGCAGGTTTCTTCAAAGGTGTTGGAAAAGGTTTAGTTGGAGCAGTGACAAGGCCAACGGGTGGCATCATAGACATGGCCAGCAGTACCTTTCAGGGAATCAAAAG tatcattcctatttgggcatggttgctctccttcccaccactgtcctcagGACCACAAAACGAAGGAGCAGCAGGCTTGTTCAAAGGTGTTGGGAAAGGTTTT---GGGGCAGTGACAAGGCCAACAGGTGTCATCATAGACATGGCCAGCAGTTCCTTTCAAGGAGTCAAAAGgtgagtcatctatatgatcagccaatggacaaagtcacagtccactattg #### Vps13a_ID4060_63 --> 0 - 0 Original Alignment GCTATTAAACAAATGTATGTACTCATTCTTGGACTTGACGTCTTGGGAAATCCCTTTGGCTTAATTAGAGAATTTTCAGAAGGAGTAGAAGCGTTTTTTTATGAACCTTACCAG taacattttgtaaacaaaaccaagtgtatctcagttcctgctttctccagGCTATTAAACAAATGTATGTACTCATACTTGGACTTGATGTCTTAGGGAATCCATTTGGCTTAATTAGGGAATTCTCAGAAGGTGTAGAAGTGTTCTTTTATGAACCTTACCCAgtatgttatctatcttgattactaatgactgcaatctgtccctacttctt Alignment from CESAR GCTATTAAACAAATGTATGTACTCATTCTTGGACTTGACGTCTTGGGAAATCCCTTTGGCTTAATTAGAGAATTTTCAGAAGGAGTAGAAGCGTTTTTTTATGAACCTTACCAG taacattttgtaaacaaaaccaagtgtatctcagttcctgctttctccagGCTATTAAACAAATGTATGTACTCATACTTGGACTTGATGTCTTAGGGAATCCATTTGGCTTAATTAGGGAATTCTCAGAAGGTGTAGAAGTGTTCTTTTATGAACCTTACCCAgtatgttatctatcttgattactaatgactgcaatctgtccctacttctt Alignment from Spaln_aa2Genome GCTATTAAACAAATGTATGTACTCATTCTTGGACTTGACGTCTTGGGAAATCCCTTTGGCTTAATTAGAGAATTTTCAGAAGGAGTAGAAGCGTTTTTTTATGAACCTTACCAG taacattttgtaaacaaaaccaagtgtatctcagttcctgctttctccagGCTATTAAACAAATGTATGTACTCATACTTGGACTTGATGTCTTAGGGAATCCATTTGGCTTAATTAGGGAATTCTCAGAAGGTGTAGAAGTGTTCTTTTATGAACCTTACCCAgtatgttatctatcttgattactaatgactgcaatctgtccctacttctt Alignment from Spaln_nt2Genome GCTATTAAACAAATGTATGTACTCATTCTTGGACTTGACGTCTTGGGAAATCCCTTTGGCTTAATTAGAGAATTTTCAGAAGGAGTAGAAGCGTTTTTTTATGAACCTTACCAG taacattttgtaaacaaaaccaagtgtatctcagttcctgctttctccagGCTATTAAACAAATGTATGTACTCATACTTGGACTTGATGTCTTAGGGAATCCATTTGGCTTAATTAGGGAATTCTCAGAAGGTGTAGAAGTGTTCTTTTATGAACCTTACCCAgtatgttatctatcttgattactaatgactgcaatctgtccctacttctt Alignment from Pairagon GCTATTAAACAAATGTATGTACTCATTCTTGGACTTGACGTCTTGGGAAATCCCTTTGGCTTAATTAGAGAATTTTCAGAAGGAGTAGAAGCGTTTTTTTATGAACCTTACCAG taacattttgtaaacaaaaccaagtgtatctcagttcctgctttctccagGCTATTAAACAAATGTATGTACTCATACTTGGACTTGATGTCTTAGGGAATCCATTTGGCTTAATTAGGGAATTCTCAGAAGGTGTAGAAGTGTTCTTTTATGAACCTTACCCAgtatgttatctatcttgattactaatgactgcaatctgtccctacttctt Alignment from Exonerate_protein2genome GCTATTAAACAAATGTATGTACTCATTCTTGGACTTGACGTCTTGGGAAATCCCTTTGGCTTAATTAGAGAATTTTCAGAAGGAGTAGAAGCGTTTTTTTATGAACCTTACCAG taacattttgtaaacaaaaccaagtgtatctcagttcctgctttctccagGCTATTAAACAAATGTATGTACTCATACTTGGACTTGATGTCTTAGGGAATCCATTTGGCTTAATTAGGGAATTCTCAGAAGGTGTAGAAGTGTTCTTTTATGAACCTTACCCAgtatgttatctatcttgattactaatgactgcaatctgtccctacttctt Alignment from Exonerate_coding2genome GCTATTAAACAAATGTATGTACTCATTCTTGGACTTGACGTCTTGGGAAATCCCTTTGGCTTAATTAGAGAATTTTCAGAAGGAGTAGAAGCGTTTTTTTATGAACCTTACCAG taacattttgtaaacaaaaccaagtgtatctcagttcctgctttctccagGCTATTAAACAAATGTATGTACTCATACTTGGACTTGATGTCTTAGGGAATCCATTTGGCTTAATTAGGGAATTCTCAGAAGGTGTAGAAGTGTTCTTTTATGAACCTTACCCAgtatgttatctatcttgattactaatgactgcaatctgtccctacttctt Alignment from GeneWise GCTATTAAACAAATGTATGTACTCATTCTTGGACTTGACGTCTTGGGAAATCCCTTTGGCTTAATTAGAGAATTTTCAGAAGGAGTAGAAGCGTTTTTTTATGAACCTTACCAG taacattttgtaaacaaaaccaagtgtatctcagttcctgctttctccagGCTATTAAACAAATGTATGTACTCATACTTGGACTTGATGTCTTAGGGAATCCATTTGGCTTAATTAGGGAATTCTCAGAAGGTGTAGAAGTGTTCTTTTATGAACCTTACCCAgtatgttatctatcttgattactaatgactgcaatctgtccctacttctt #### Vps13a_ID4066_57 --> 0 - 1 Original Alignment ATCCAAAATCAGATTCATGGTGCTATTTTCCCTTTCGTGTTTTATCCTATTAAACCTCCAAGATCTGTCACCATGGACTCAg ttggatataggctgcacctcagttttaatgtcctctttattttctttcagATTGAGAATCAAATCCATGGTGCTATTTTTCCTTTTGTGTTTTATTCAATCAAGACACCAAGATCAGTCACAATAGACTCAggtgagggttaaagttattttgtggcatatgccagcatcagatgccagcat Alignment from CESAR ATCCAAAATCAGATTCATGGTGCTATTTTCCCTTTCGTGTTTTATCCTATTAAACCTCCAAGATCTGTCACCATGGACTCAg ttggatataggctgcacctcagttttaatgtcctctttattttctttcagATTGAGAATCAAATCCATGGTGCTATTTTTCCTTTTGTGTTTTATTCAATCAAGACACCAAGATCAGTCACAATAGACTCAggtgagggttaaagttattttgtggcatatgccagcatcagatgccagcat Alignment from Spaln_aa2Genome ATCCAAAATCAGATTCATGGTGCTATTTTCCCTTTCGTGTTTTATCCTATTAAACCTCCAAGATCTGTCACCATGGACTCAG ttggatataggctgcacctcagttttaatgtcctctttattttctttcagATTGAGAATCAAATCCATGGTGCTATTTTTCCTTTTGTGTTTTATTCAATCAAGACACCAAGATCAGTCACAATAGACTCAGgtgagggttaaagttattttgtggcatatgccagcatcagatgccagcat Alignment from Spaln_nt2Genome ATCCAAAATCAGATTCATGGTGCTATTTTCCCTTTCGTGTTTTATCCTATTAAACCTCCAAGATCTGTCACCATGGACTCAG ttggatataggctgcacctcagttttaatgtcctctttattttctttcagATTGAGAATCAAATCCATGGTGCTATTTTTCCTTTTGTGTTTTATTCAATCAAGACACCAAGATCAGTCACAATAGACTCAGgtgagggttaaagttattttgtggcatatgccagcatcagatgccagcat Alignment from Pairagon ATCCAAAATCAGATTCATGGTGCTATTTTCCCTTTCGTGTTTTATCCTATTAAACCTCCAAGATCTGTCACCATGGACTCAG ttggatataggctgcacctcagttttaatgtcctctttattttctttcagATTGAGAATCAAATCCATGGTGCTATTTTTCCTTTTGTGTTTTATTCAATCAAGACACCAAGATCAGTCACAATAGACTCAGgtgagggttaaagttattttgtggcatatgccagcatcagatgccagcat Alignment from Exonerate_protein2genome ATCCAAAATCAGATTCATGGTGCTATTTTCCCTTTCGTGTTTTATCCTATTAAACCTCCAAGATCTGTCACCATGGACTCAG ttggatataggctgcacctcagttttaatgtcctctttattttctttcagATTGAGAATCAAATCCATGGTGCTATTTTTCCTTTTGTGTTTTATTCAATCAAGACACCAAGATCAGTCACAATAGACTCAGgtgagggttaaagttattttgtggcatatgccagcatcagatgccagcat Alignment from Exonerate_coding2genome ATCCAAAATCAGATTCATGGTGCTATTTTCCCTTTCGTGTTTTATCCTATTAAACCTCCAAGATCTGTCACCATGGACTCAG ttggatataggctgcacctcagttttaatgtcctctttattttctttcagATTGAGAATCAAATCCATGGTGCTATTTTTCCTTTTGTGTTTTATTCAATCAAGACACCAAGATCAGTCACAATAGACTCAGgtgagggttaaagttattttgtggcatatgccagcatcagatgccagcat Alignment from GeneWise ATCCAAAATCAGATTCATGGTGCTATTTTCCCTTTCGTGTTTTATCCTATTAAACCTCCAAGATCTGTCACCATGGACTCAG ttggatataggctgcacctcagttttaatgtcctctttattttctttcagATTGAGAATCAAATCCATGGTGCTATTTTTCCTTTTGTGTTTTATTCAATCAAGACACCAAGATCAGTCACAATAGACTCAGgtgagggttaaagttattttgtggcatatgccagcatcagatgccagcat #### Vps13a_ID4077_46 --> 0 - 2 Original Alignment ATTAAGAATCATTTTTCAATCCCAATTTCCGTTTTTGAAGGAGATACTTTATTGGGAATTGCTTCACCTGAAAATGAATTTAACATACCATTAGCATCTTACcg tctgaatttggttgtatcgtcgttgtctccacctctcatttctcctgcagATCAAGAACCATTTCTCAATCCCTATTTCTGTCTTCGAGGGGGATACCTTGTTGGGAATTGCTTCTCCCAAA---------------CCATTTGCCTCATATcggtaagttcacaagcctaaatatacagttccagaaacattctggcactccc Alignment from CESAR ATTAAGAATCATTTTTCAATCCCAATTTCCGTTTTTGAAGGAGATACTTTATTGGGAATTGCTTCACCTGAAAATGAATTTAACATACCATTAGCATCTTACcg tctgaatttggttgtatcgtcgttgtctccacctctcatttctcctgcagATCAAGAACCATTTCTCAATCCCTATTTCTGTCTTCGAGGGGGATACCTTGTTGGGAATTGCTTCTCCCAAA---------------CCATTTGCCTCATATcggtaagttcacaagcctaaatatacagttccagaaacattctggcactccc Alignment from Spaln_aa2Genome ATTAAGAATCATTTTTCAATCCCAATTTCCGTTTTTGAAGGAGATACTTTATTGGGAATTGCTTCACCTGAAAATGAATTTAACATACCATTAGCATCTTACCG tctgaatttggttgtatcgtcgttgtctccacctctcatttctcctgcagATCAAGAACCATTTCTCAATCCCTATTTCTGTCTTCGAGGGGGATACCTTGTTGGGAATTGCTTCTCCCAAA---------------CCATTTGCCTCATATCGgtaagttcacaagcctaaatatacagttccagaaacattctggcactccc Alignment from Spaln_nt2Genome ATTAAGAATCATTTTTCAATCCCAATTTCCGTTTTTGAAGGAGATACTTTATTGGGAATTGCTTCACCTGAAAATGAATTTAACATACCATTAGCATCTTACCG tctgaatttggttgtatcgtcgttgtctccacctctcatttctcctgcagATCAAGAACCATTTCTCAATCCCTATTTCTGTCTTCGAGGGGGATACCTTGTTGGGAATTGCTTCTCC---------------CAAACCATTTGCCTCATATCGgtaagttcacaagcctaaatatacagttccagaaacattctggcactccc Alignment from Pairagon ATTAAGAATCATTTTTCAATCCCAATTTCCGTTTTTGAAGGAGATACTTTATTGGGAATTGCTTCACCTGAAAATGAATTTAACATACCATTAGCATCTTACCG tctgaatttggttgtatcgtcgttgtctccacctctcatttctcctgcagATCAAGAACCATTTCTCAATCCCTATTTCTGTCTTCGAGGGGGATACCTTGTTGGGAATTGCTTCTCC---------------CAAACCATTTGCCTCATATCGgtaagttcacaagcctaaatatacagttccagaaacattctggcactccc Alignment from Exonerate_protein2genome ATTAAGAATCATTTTTCAATCCCAATTTCCGTTTTTGAAGGAGATACTTTATTGGGAATTGCTTCACCTGAAAATGAATTTAACATACCATTAGCATCTTACCG tctgaatttggttgtatcgtcgttgtctccacctctcatttctcctgcagATCAAGAACCATTTCTCAATCCCTATTTCTGTCTTCGAGGGGGATACCTTGTTGGGAATTGCTTCTCCCAAA---------------CCATTTGCCTCATATCGgtaagttcacaagcctaaatatacagttccagaaacattctggcactccc Alignment from Exonerate_coding2genome ATTAAGAATCATTTTTCAATCCCAATTTCCGTTTTTGAAGGAGATACTTTATTGGGAATTGCTTCACCTGAAAATGAATTTAACATACCATTAGCATCTTACCG tctgaatttggttgtatcgtcgttgtctccacctctcatttctcctgcagATCAAGAACCATTTCTCAATCCCTATTTCTGTCTTCGAGGGGGATACCTTGTTGGGAATTGCTTCTCCCAAA---------------CCATTTGCCTCATATCGgtaagttcacaagcctaaatatacagttccagaaacattctggcactccc Alignment from GeneWise ATTAAGAATCATTTTTCAATCCCAATTTCCGTTTTTGAAGGAGATACTTTATTGGGAATTGCTTCACCTGAAAATGAATTTAACATACCATTAGCATCTTACCG tctgaatttggttgtatcgtcgttgtctccacctctcatttctcctgcagATCAAGAACCATTTCTCAATCCCTATTTCTGTCTTCGAGGGGGATACCTTGTTGGGAATTGCTTCTCCCAAA---------------CCATTTGCCTCATATCGgtaagttcacaagcctaaatatacagttccagaaacattctggcactccc #### Vps13a_ID4080_43 --> 0 - 0 Original Alignment ATGAAAAAGAAAGCAAAAGAGGCCATTGTTGAGTCTGACAGTGAAGCAGAAAACTACAAAGTACCAGAATATAAGACTGCCATAAGTTTTTATTCTAGAGACCAGTTAAACATTACATTATCCAAATGTGGCCTTGTGATGTTAAATAATTTAGTTGAG tttgctttacaactaatgaagtatatctcccacccccaccccacccctagATGAAAAAGAGGGCAACAGAGGCCATTGTAGGGTCAGACACTGAAGCAGAAAACTACAAAGTACTGGAATATCAGACTGCCATCAGTTTCTATGCTCAAGACCAGCTAAACTTTACATTATCCAAGTGTGGCCTCGTGATGTTGAATAATTTAGTTGAGgtatccatgaaaactatttagaagccaaaatatcagtcttgctcatcaag Alignment from CESAR ATGAAAAAGAAAGCAAAAGAGGCCATTGTTGAGTCTGACAGTGAAGCAGAAAACTACAAAGTACCAGAATATAAGACTGCCATAAGTTTTTATTCTAGAGACCAGTTAAACATTACATTATCCAAATGTGGCCTTGTGATGTTAAATAATTTAGTTGAG tttgctttacaactaatgaagtatatctcccacccccaccccacccctagATGAAAAAGAGGGCAACAGAGGCCATTGTAGGGTCAGACACTGAAGCAGAAAACTACAAAGTACTGGAATATCAGACTGCCATCAGTTTCTATGCTCAAGACCAGCTAAACTTTACATTATCCAAGTGTGGCCTCGTGATGTTGAATAATTTAGTTGAGgtatccatgaaaactatttagaagccaaaatatcagtcttgctcatcaag Alignment from Spaln_aa2Genome ATGAAAAAGAAAGCAAAAGAGGCCATTGTTGAGTCTGACAGTGAAGCAGAAAACTACAAAGTACCAGAATATAAGACTGCCATAAGTTTTTATTCTAGAGACCAGTTAAACATTACATTATCCAAATGTGGCCTTGTGATGTTAAATAATTTAGTTGAG tttgctttacaactaatgaagtatatctcccacccccaccccacccctagATGAAAAAGAGGGCAACAGAGGCCATTGTAGGGTCAGACACTGAAGCAGAAAACTACAAAGTACTGGAATATCAGACTGCCATCAGTTTCTATGCTCAAGACCAGCTAAACTTTACATTATCCAAGTGTGGCCTCGTGATGTTGAATAATTTAGTTGAGgtatccatgaaaactatttagaagccaaaatatcagtcttgctcatcaag Alignment from Spaln_nt2Genome ATGAAAAAGAAAGCAAAAGAGGCCATTGTTGAGTCTGACAGTGAAGCAGAAAACTACAAAGTACCAGAATATAAGACTGCCATAAGTTTTTATTCTAGAGACCAGTTAAACATTACATTATCCAAATGTGGCCTTGTGATGTTAAATAATTTAGTTGAG tttgctttacaactaatgaagtatatctcccacccccaccccacccctagATGAAAAAGAGGGCAACAGAGGCCATTGTAGGGTCAGACACTGAAGCAGAAAACTACAAAGTACTGGAATATCAGACTGCCATCAGTTTCTATGCTCAAGACCAGCTAAACTTTACATTATCCAAGTGTGGCCTCGTGATGTTGAATAATTTAGTTGAGgtatccatgaaaactatttagaagccaaaatatcagtcttgctcatcaag Alignment from Pairagon ATGAAAAAGAAAGCAAAAGAGGCCATTGTTGAGTCTGACAGTGAAGCAGAAAACTACAAAGTACCAGAATATAAGACTGCCATAAGTTTTTATTCTAGAGACCAGTTAAACATTACATTATCCAAATGTGGCCTTGTGATGTTAAATAATTTAGTTGAG tttgctttacaactaatgaagtatatctcccacccccaccccacccctagATGAAAAAGAGGGCAACAGAGGCCATTGTAGGGTCAGACACTGAAGCAGAAAACTACAAAGTACTGGAATATCAGACTGCCATCAGTTTCTATGCTCAAGACCAGCTAAACTTTACATTATCCAAGTGTGGCCTCGTGATGTTGAATAATTTAGTTGAGgtatccatgaaaactatttagaagccaaaatatcagtcttgctcatcaag Alignment from Exonerate_protein2genome ATGAAAAAGAAAGCAAAAGAGGCCATTGTTGAGTCTGACAGTGAAGCAGAAAACTACAAAGTACCAGAATATAAGACTGCCATAAGTTTTTATTCTAGAGACCAGTTAAACATTACATTATCCAAATGTGGCCTTGTGATGTTAAATAATTTAGTTGAG tttgctttacaactaatgaagtatatctcccacccccaccccacccctagATGAAAAAGAGGGCAACAGAGGCCATTGTAGGGTCAGACACTGAAGCAGAAAACTACAAAGTACTGGAATATCAGACTGCCATCAGTTTCTATGCTCAAGACCAGCTAAACTTTACATTATCCAAGTGTGGCCTCGTGATGTTGAATAATTTAGTTGAGgtatccatgaaaactatttagaagccaaaatatcagtcttgctcatcaag Alignment from Exonerate_coding2genome ATGAAAAAGAAAGCAAAAGAGGCCATTGTTGAGTCTGACAGTGAAGCAGAAAACTACAAAGTACCAGAATATAAGACTGCCATAAGTTTTTATTCTAGAGACCAGTTAAACATTACATTATCCAAATGTGGCCTTGTGATGTTAAATAATTTAGTTGAG tttgctttacaactaatgaagtatatctcccacccccaccccacccctagATGAAAAAGAGGGCAACAGAGGCCATTGTAGGGTCAGACACTGAAGCAGAAAACTACAAAGTACTGGAATATCAGACTGCCATCAGTTTCTATGCTCAAGACCAGCTAAACTTTACATTATCCAAGTGTGGCCTCGTGATGTTGAATAATTTAGTTGAGgtatccatgaaaactatttagaagccaaaatatcagtcttgctcatcaag Alignment from GeneWise ATGAAAAAGAAAGCAAAAGAGGCCATTGTTGAGTCTGACAGTGAAGCAGAAAACTACAAAGTACCAGAATATAAGACTGCCATAAGTTTTTATTCTAGAGACCAGTTAAACATTACATTATCCAAATGTGGCCTTGTGATGTTAAATAATTTAGTTGAG tttgctttacaactaatgaagtatatctcccacccccaccccacccctagATGAAAAAGAGGGCAACAGAGGCCATTGTAGGGTCAGACACTGAAGCAGAAAACTACAAAGTACTGGAATATCAGACTGCCATCAGTTTCTATGCTCAAGACCAGCTAAACTTTACATTATCCAAGTGTGGCCTCGTGATGTTGAATAATTTAGTTGAGgtatccatgaaaactatttagaagccaaaatatcagtcttgctcatcaag #### Vps13a_ID4086_37 --> 0 - 2 Original Alignment GCCTCCTTTACAGATGTTCGCGATCCTTCTCTGGAACTTGCTGAATTTAAGTTGGAGAATATTATAAGTAGTTTAAAAATATATACAGATGATTCTACAGTCTTTTCTTTCTCAGTAAAAAACTGTATTTTAGATGATAAAAGGTCACATGTCATGAAAGCCACTCCTag atctggattttattcacctattgatttttttttctgttcccctgtcacagGCCTCCTTTACAGACATTCGTGATCCTCCTCTGAAACTTGCTGAGTATAAGCTGAAAAATATTATAAGTAGTTTAAAGATATATATTGATGATGCTACAGTCTTTTCTTTTTCAGTGAAAAATTGTATTCTAGATGATAAAAGGTCGCATGTTATGAAAGCCATTCCTcggtgagtggtaattatgatttttagctatcataattaggaagttcccctcc Alignment from CESAR GCCTCCTTTACAGATGTTCGCGATCCTTCTCTGGAACTTGCTGAATTTAAGTTGGAGAATATTATAAGTAGTTTAAAAATATATACAGATGATTCTACAGTCTTTTCTTTCTCAGTAAAAAACTGTATTTTAGATGATAAAAGGTCACATGTCATGAAAGCCACTCCTag atctggattttattcacctattgatttttttttctgttcccctgtcacagGCCTCCTTTACAGACATTCGTGATCCTCCTCTGAAACTTGCTGAGTATAAGCTGAAAAATATTATAAGTAGTTTAAAGATATATATTGATGATGCTACAGTCTTTTCTTTTTCAGTGAAAAATTGTATTCTAGATGATAAAAGGTCGCATGTTATGAAAGCCATTCCTcggtgagtggtaattatgatttttagctatcataattaggaagttcccctcc Alignment from Spaln_aa2Genome GCCTCCTTTACAGATGTTCGCGATCCTTCTCTGGAACTTGCTGAATTTAAGTTGGAGAATATTATAAGTAGTTTAAAAATATATACAGATGATTCTACAGTCTTTTCTTTCTCAGTAAAAAACTGTATTTTAGATGATAAAAGGTCACATGTCATGAAAGCCACTCCTAG atctggattttattcacctattgatttttttttctgttcccctgtcacagGCCTCCTTTACAGACATTCGTGATCCTCCTCTGAAACTTGCTGAGTATAAGCTGAAAAATATTATAAGTAGTTTAAAGATATATATTGATGATGCTACAGTCTTTTCTTTTTCAGTGAAAAATTGTATTCTAGATGATAAAAGGTCGCATGTTATGAAAGCCATTCCTCGgtgagtggtaattatgatttttagctatcataattaggaagttcccctcc Alignment from Spaln_nt2Genome GCCTCCTTTACAGATGTTCGCGATCCTTCTCTGGAACTTGCTGAATTTAAGTTGGAGAATATTATAAGTAGTTTAAAAATATATACAGATGATTCTACAGTCTTTTCTTTCTCAGTAAAAAACTGTATTTTAGATGATAAAAGGTCACATGTCATGAAAGCCACTCCTAG atctggattttattcacctattgatttttttttctgttcccctgtcacagGCCTCCTTTACAGACATTCGTGATCCTCCTCTGAAACTTGCTGAGTATAAGCTGAAAAATATTATAAGTAGTTTAAAGATATATATTGATGATGCTACAGTCTTTTCTTTTTCAGTGAAAAATTGTATTCTAGATGATAAAAGGTCGCATGTTATGAAAGCCATTCCTCGgtgagtggtaattatgatttttagctatcataattaggaagttcccctcc Alignment from Pairagon GCCTCCTTTACAGATGTTCGCGATCCTTCTCTGGAACTTGCTGAATTTAAGTTGGAGAATATTATAAGTAGTTTAAAAATATATACAGATGATTCTACAGTCTTTTCTTTCTCAGTAAAAAACTGTATTTTAGATGATAAAAGGTCACATGTCATGAAAGCCACTCCTAG atctggattttattcacctattgatttttttttctgttcccctgtcacagGCCTCCTTTACAGACATTCGTGATCCTCCTCTGAAACTTGCTGAGTATAAGCTGAAAAATATTATAAGTAGTTTAAAGATATATATTGATGATGCTACAGTCTTTTCTTTTTCAGTGAAAAATTGTATTCTAGATGATAAAAGGTCGCATGTTATGAAAGCCATTCCTCGgtgagtggtaattatgatttttagctatcataattaggaagttcccctcc Alignment from Exonerate_protein2genome GCCTCCTTTACAGATGTTCGCGATCCTTCTCTGGAACTTGCTGAATTTAAGTTGGAGAATATTATAAGTAGTTTAAAAATATATACAGATGATTCTACAGTCTTTTCTTTCTCAGTAAAAAACTGTATTTTAGATGATAAAAGGTCACATGTCATGAAAGCCACTCCTAG atctggattttattcacctattgatttttttttctgttcccctgtcacagGCCTCCTTTACAGACATTCGTGATCCTCCTCTGAAACTTGCTGAGTATAAGCTGAAAAATATTATAAGTAGTTTAAAGATATATATTGATGATGCTACAGTCTTTTCTTTTTCAGTGAAAAATTGTATTCTAGATGATAAAAGGTCGCATGTTATGAAAGCCATTCCTCGgtgagtggtaattatgatttttagctatcataattaggaagttcccctcc Alignment from Exonerate_coding2genome GCCTCCTTTACAGATGTTCGCGATCCTTCTCTGGAACTTGCTGAATTTAAGTTGGAGAATATTATAAGTAGTTTAAAAATATATACAGATGATTCTACAGTCTTTTCTTTCTCAGTAAAAAACTGTATTTTAGATGATAAAAGGTCACATGTCATGAAAGCCACTCCTAG atctggattttattcacctattgatttttttttctgttcccctgtcacagGCCTCCTTTACAGACATTCGTGATCCTCCTCTGAAACTTGCTGAGTATAAGCTGAAAAATATTATAAGTAGTTTAAAGATATATATTGATGATGCTACAGTCTTTTCTTTTTCAGTGAAAAATTGTATTCTAGATGATAAAAGGTCGCATGTTATGAAAGCCATTCCTCGgtgagtggtaattatgatttttagctatcataattaggaagttcccctcc Alignment from GeneWise GCCTCCTTTACAGATGTTCGCGATCCTTCTCTGGAACTTGCTGAATTTAAGTTGGAGAATATTATAAGTAGTTTAAAAATATATACAGATGATTCTACAGTCTTTTCTTTCTCAGTAAAAAACTGTATTTTAGATGATAAAAGGTCACATGTCATGAAAGCCACTCCTAG atctggattttattcacctattgatttttttttctgttcccctgtcacagGCCTCCTTTACAGACATTCGTGATCCTCCTCTGAAACTTGCTGAGTATAAGCTGAAAAATATTATAAGTAGTTTAAAGATATATATTGATGATGCTACAGTCTTTTCTTTTTCAGTGAAAAATTGTATTCTAGATGATAAAAGGTCGCATGTTATGAAAGCCATTCCTCGgtgagtggtaattatgatttttagctatcataattaggaagttcccctcc #### Vps13a_ID4087_36 --> 2 - 0 Original Alignment ctACTGTGGTGACCGCTGCTGTGGTGGAGGTGCACCCACAGGCTTCTCAAGCGCACACGATGCTGAACGTGAGCTTCCAGACCGATTACCTCACCATGGCACTCTACAGTCCGGGGCCGGATGAG ccctgcaacagcaaaaattgatcaaacaatgcatggtctttttcctacagcaACTGTAGTGACTGCTGCAGTTGTGGAGGTGCACCCACAGGCTTCTCCAGCACACACCGTTCTCAATGTGAGCTTCTACATAGATTATCTTAGCATGGCACTCTACAGCCCAGCACCAGATGAGgtacgtgtagctcaaattactactcgcagcacaacaggcacccaatgttt Alignment from CESAR ctACTGTGGTGACCGCTGCTGTGGTGGAGGTGCACCCACAGGCTTCTCAAGCGCACACGATGCTGAACGTGAGCTTCCAGACCGATTACCTCACCATGGCACTCTACAGTCCGGGGCCGGATGAG ccctgcaacagcaaaaattgatcaaacaatgcatggtctttttcctacagcaACTGTAGTGACTGCTGCAGTTGTGGAGGTGCACCCACAGGCTTCTCCAGCACACACCGTTCTCAATGTGAGCTTCTACATAGATTATCTTAGCATGGCACTCTACAGCCCAGCACCAGATGAGgtacgtgtagctcaaattactactcgcagcacaacaggcacccaatgttt Alignment from Spaln_aa2Genome CTACTGTGGTGACCGCTGCTGTGGTGGAGGTGCACCCACAGGCTTCTCAAGCGCACACGATGCTGAACGTGAGCTTCCAGACCGATTACCTCACCATGGCACTCTACAGTCCGGGGCCGGATGAG ccctgcaacagcaaaaattgatcaaacaatgcatggtctttttcctacagCAACTGTAGTGACTGCTGCAGTTGTGGAGGTGCACCCACAGGCTTCTCCAGCACACACCGTTCTCAATGTGAGCTTCTACATAGATTATCTTAGCATGGCACTCTACAGCCCAGCACCAGATGAGgtacgtgtagctcaaattactactcgcagcacaacaggcacccaatgttt Alignment from Spaln_nt2Genome CTACTGTGGTGACCGCTGCTGTGGTGGAGGTGCACCCACAGGCTTCTCAAGCGCACACGATGCTGAACGTGAGCTTCCAGACCGATTACCTCACCATGGCACTCTACAGTCCGGGGCCGGATGAG ccctgcaacagcaaaaattgatcaaacaatgcatggtctttttcctacagCAACTGTAGTGACTGCTGCAGTTGTGGAGGTGCACCCACAGGCTTCTCCAGCACACACCGTTCTCAATGTGAGCTTCTACATAGATTATCTTAGCATGGCACTCTACAGCCCAGCACCAGATGAGgtacgtgtagctcaaattactactcgcagcacaacaggcacccaatgttt Alignment from Pairagon CTACTGTGGTGACCGCTGCTGTGGTGGAGGTGCACCCACAGGCTTCTCAAGCGCACACGATGCTGAACGTGAGCTTCCAGACCGATTACCTCACCATGGCACTCTACAGTCCGGGGCCGGATGAG ccctgcaacagcaaaaattgatcaaacaatgcatggtctttttcctacagCAACTGTAGTGACTGCTGCAGTTGTGGAGGTGCACCCACAGGCTTCTCCAGCACACACCGTTCTCAATGTGAGCTTCTACATAGATTATCTTAGCATGGCACTCTACAGCCCAGCACCAGATGAGgtacgtgtagctcaaattactactcgcagcacaacaggcacccaatgttt Alignment from Exonerate_protein2genome CTACTGTGGTGACCGCTGCTGTGGTGGAGGTGCACCCACAGGCTTCTCAAGCGCACACGATGCTGAACGTGAGCTTCCAGACCGATTACCTCACCATGGCACTCTACAGTCCGGGGCCGGATGAG ccctgcaacagcaaaaattgatcaaacaatgcatggtctttttcctacagCAACTGTAGTGACTGCTGCAGTTGTGGAGGTGCACCCACAGGCTTCTCCAGCACACACCGTTCTCAATGTGAGCTTCTACATAGATTATCTTAGCATGGCACTCTACAGCCCAGCACCAGATGAGgtacgtgtagctcaaattactactcgcagcacaacaggcacccaatgttt Alignment from Exonerate_coding2genome CTACTGTGGTGACCGCTGCTGTGGTGGAGGTGCACCCACAGGCTTCTCAAGCGCACACGATGCTGAACGTGAGCTTCCAGACCGATTACCTCACCATGGCACTCTACAGTCCGGGGCCGGATGAG ccctgcaacagcaaaaattgatcaaacaatgcatggtctttttcctacagCAACTGTAGTGACTGCTGCAGTTGTGGAGGTGCACCCACAGGCTTCTCCAGCACACACCGTTCTCAATGTGAGCTTCTACATAGATTATCTTAGCATGGCACTCTACAGCCCAGCACCAGATGAGgtacgtgtagctcaaattactactcgcagcacaacaggcacccaatgttt Alignment from GeneWise CTACTGTGGTGACCGCTGCTGTGGTGGAGGTGCACCCACAGGCTTCTCAAGCGCACACGATGCTGAACGTGAGCTTCCAGACCGATTACCTCACCATGGCACTCTACAGTCCGGGGCCGGATGAG ccctgcaacagcaaaaattgatcaaacaatgcatggtctttttcctacagCAACTGTAGTGACTGCTGCAGTTGTGGAGGTGCACCCACAGGCTTCTCCAGCACACACCGTTCTCAATGTGAGCTTCTACATAGATTATCTTAGCATGGCACTCTACAGCCCAGCACCAGATGAGgtacgtgtagctcaaattactactcgcagcacaacaggcacccaatgttt #### Vps13a_ID4098_25 --> 2 - 0 Original Alignment acTCAGAGGAAGAATTTTTTGATGCACCATGTAGTCCCTTGGAGGAGTGTCCTCAAGTGTCATGTAGAGATAAATGTACTCGACAGAAAAAATTACAAAAGAAAGATTGTGTGATGAATCTTATTCAACTTAGGATGAGATTTGAAGTAGCAGAG ttaactcatctaggtaacttacagtaccgatatgtgctctgcttctgcagacTCAGAGGAAGAATTTTTTGATGCACCCTGCATTCCTTTGGAGGACTGTCCTCAAGTTTCATGTCGAGACAAATGTACTCAAAAAAAAAAGTTGCAAAAAAAGGATTGCATCATGAATCTCAATCAACTAAGAATGAGGTTTGAAGTTGCAGAAgtaagtgtatttgaggttcactatacgaattcctgtttatctcctcttgt Alignment from CESAR acTCAGAGGAAGAATTTTTTGATGCACCATGTAGTCCCTTGGAGGAGTGTCCTCAAGTGTCATGTAGAGATAAATGTACTCGACAGAAAAAATTACAAAAGAAAGATTGTGTGATGAATCTTATTCAACTTAGGATGAGATTTGAAGTAGCAGAG ttaactcatctaggtaacttacagtaccgatatgtgctctgcttctgcagacTCAGAGGAAGAATTTTTTGATGCACCCTGCATTCCTTTGGAGGACTGTCCTCAAGTTTCATGTCGAGACAAATGTACTCAAAAAAAAAAGTTGCAAAAAAAGGATTGCATCATGAATCTCAATCAACTAAGAATGAGGTTTGAAGTTGCAGAAgtaagtgtatttgaggttcactatacgaattcctgtttatctcctcttgt Alignment from Spaln_aa2Genome ACTCAGAGGAAGAATTTTTTGATGCACCATGTAGTCCCTTGGAGGAGTGTCCTCAAGTGTCATGTAGAGATAAATGTACTCGACAGAAAAAATTACAAAAGAAAGATTGTGTGATGAATCTTATTCAACTTAGGATGAGATTTGAAGTAGCAGAG ttaactcatctaggtaacttacagtaccgatatgtgctctgcttctgcagACTCAGAGGAAGAATTTTTTGATGCACCCTGCATTCCTTTGGAGGACTGTCCTCAAGTTTCATGTCGAGACAAATGTACTCAAAAAAAAAAGTTGCAAAAAAAGGATTGCATCATGAATCTCAATCAACTAAGAATGAGGTTTGAAGTTGCAGAAgtaagtgtatttgaggttcactatacgaattcctgtttatctcctcttgt Alignment from Spaln_nt2Genome ACTCAGAGGAAGAATTTTTTGATGCACCATGTAGTCCCTTGGAGGAGTGTCCTCAAGTGTCATGTAGAGATAAATGTACTCGACAGAAAAAATTACAAAAGAAAGATTGTGTGATGAATCTTATTCAACTTAGGATGAGATTTGAAGTAGCAGAG ttaactcatctaggtaacttacagtaccgatatgtgctctgcttctgcagACTCAGAGGAAGAATTTTTTGATGCACCCTGCATTCCTTTGGAGGACTGTCCTCAAGTTTCATGTCGAGACAAATGTACTCAAAAAAAAAAGTTGCAAAAAAAGGATTGCATCATGAATCTCAATCAACTAAGAATGAGGTTTGAAGTTGCAGAAgtaagtgtatttgaggttcactatacgaattcctgtttatctcctcttgt Alignment from Pairagon ACTCAGAGGAAGAATTTTTTGATGCACCATGTAGTCCCTTGGAGGAGTGTCCTCAAGTGTCATGTAGAGATAAATGTACTCGACAGAAAAAATTACAAAAGAAAGATTGTGTGATGAATCTTATTCAACTTAGGATGAGATTTGAAGTAGCAGAG ttaactcatctaggtaacttacagtaccgatatgtgctctgcttctgcagACTCAGAGGAAGAATTTTTTGATGCACCCTGCATTCCTTTGGAGGACTGTCCTCAAGTTTCATGTCGAGACAAATGTACTCAAAAAAAAAAGTTGCAAAAAAAGGATTGCATCATGAATCTCAATCAACTAAGAATGAGGTTTGAAGTTGCAGAAgtaagtgtatttgaggttcactatacgaattcctgtttatctcctcttgt Alignment from Exonerate_protein2genome ACTCAGAGGAAGAATTTTTTGATGCACCATGTAGTCCCTTGGAGGAGTGTCCTCAAGTGTCATGTAGAGATAAATGTACTCGACAGAAAAAATTACAAAAGAAAGATTGTGTGATGAATCTTATTCAACTTAGGATGAGATTTGAAGTAGCAGAG ttaactcatctaggtaacttacagtaccgatatgtgctctgcttctgcagACTCAGAGGAAGAATTTTTTGATGCACCCTGCATTCCTTTGGAGGACTGTCCTCAAGTTTCATGTCGAGACAAATGTACTCAAAAAAAAAAGTTGCAAAAAAAGGATTGCATCATGAATCTCAATCAACTAAGAATGAGGTTTGAAGTTGCAGAAgtaagtgtatttgaggttcactatacgaattcctgtttatctcctcttgt Alignment from Exonerate_coding2genome ATTGGAACAGCCTGTTACTGAAGATGACTCAGAGGAAGAATTTTTTGATGCACCATGTAGTCCCTTGGAGGAGTGTCCTCAAGTGTCATGTAGAGATAAATGTACTCGACAGAAAAAATTACAAAAGAAAGATTGTGTGATGAATCTTATTCAACTTAGGATGAGATTTGAAGTAGCAGAG ttaactcatctaggtaacttacagTACCGATATGTGCTCTGCTTCTGCAGACTCAGAGGAAGAATTTTTTGATGCACCCTGCATTCCTTTGGAGGACTGTCCTCAAGTTTCATGTCGAGACAAATGTACTCAAAAAAAAAAGTTGCAAAAAAAGGATTGCATCATGAATCTCAATCAACTAAGAATGAGGTTTGAAGTTGCAGAAgtaagtgtatttgaggttcactatacgaattcctgtttatctcctcttgt Alignment from GeneWise ----GAACAGCCTGTTACTGAAGATGACTCAGAGGAAGAATTTTTTGATGCACCATGTAGTCCCTTGGAGGAGTGTCCTCAAGTGTCATGTAGAGATAAATGTACTCGACAGAAAAAATTACAAAAGAAAGATTGTGTGATGAATCTTATTCAACTTAGGATGAGATTTGAAGTAGCAGAG ttaactcatctaggtaacttacagTACCGATATGTGCTCTGCTTCTGCAGACTCAGAGGAAGAATTTTTTGATGCACCCTGCATTCCTTTGGAGGACTGTCCTCAAGTTTCATGTCGAGACAAATGTACTCAAAAAAAAAAGTTGCAAAAAAAGGATTGCATCATGAATCTCAATCAACTAAGAATGAGGTTTGAAGTTGCAGAAgtaagtgtatttgaggttcactatacgaattcctgtttatctcctcttgt #### Vps13a_ID4099_24 --> 0 - 1 Original Alignment ATTCAAGCATCTGCTTTGCCAGTATCA---CACATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATg caaaatttgtagagaagtttttgctgtatcatttgttctcttttatgtagATT---GCATCCACTTTGCCAGTGTCACATCATGTTTCTAAGGAACTGATACCTTCACTCAAACATCCT------GAAGATggtaagtataagcccatgaccaggacactttatgtaggtctactctaaatc Alignment from CESAR ATTCAAGCATCTGCTTTGCCAGTATCACAC---ATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATg caaaatttgtagagaagtttttgctgtatcatttgttctcttttatgtagATT---GCATCCACTTTGCCAGTGTCACATCATGTTTCTAAGGAACTGATACCTTCACTCAAACATCCT------GAAGATggtaagtataagcccatgaccaggacactttatgtaggtctactctaaatc Alignment from Spaln_aa2Genome ATTCAAGCATCTGCTTTGCCAGTATCA---CACATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATG caaaatttgtagagaagtttttgctgtatcatttgttctcttttatgtagATT---GCATCCACTTTGCCAGTGTCACATCATGTTTCTAAGGAACTGATACCTTCACTCAAACATCCT------GAAGATGgtaagtataagcccatgaccaggacactttatgtaggtctactctaaatc Alignment from Spaln_nt2Genome ATTCAAGCATCTGCTTTGCCAGTATCACA-CAT--TTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATG caaaatttgtagagaagtttttgctgtatcatttgttctcttttatgtagATT---GCATCCACTTTGCCAGTGTCACATCATGTTTCTAAGGAACTGATACCTTCACTCAAACA------TCCTGAAGATGgtaagtataagcccatgaccaggacactttatgtaggtctactctaaatc Alignment from Pairagon ATTCAAGCATCTGCTTTGCCAGTATCAC----------------------------------ACATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATG caaaatttgtagagaagtttttgctgtatcatttgttctcttttatgtagATT---GCATCCACTTTGCCAGTGTCACATCATGTTTCTAAGGAACTGATACCTTCACTCAAACATC-------------------------------------CTGAAGATGgtaagtataagcccatgaccaggacactttatgtaggtctactctaaatc Alignment from Exonerate_protein2genome ATTCAAGCATCTGCTTTGCCAGTATCACACATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATG caaaatttgtagagaagtttttgctgtatcatttgttctcttttatgtagATTGCATCCACTTTGCCAGTGTCACATCATGTTTCTAAGGAACTGATACCTTCACTCAAACATCCT------GAAGATGgtaagtataagcccatgaccaggacactttatgtaggtctactctaaatc Alignment from Exonerate_coding2genome caaaatttgtagagaagtttttgctgtatcatttgttctcttttatgtagattgcatccactttgccagtgtcacatcatgtttctaaggaactgataccttcactcaaacatcctgaagatggtaagtataagcccatgaccaggacactttatgtaggtctactctaaatc Alignment from GeneWise ATTCAAGCATCTGCTTTGCCAGTATCACAC---ATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATG caaaatttgtagagaagtttttgctgtatcatttgttctcttttatgtagATT---GCATCCACTTTGCCAGTGTCACATCATGTTTCTAAGGAACTGATACCTTCACTCAAACATCCT------GAAGATGgtaagtataagcccatgaccaggacactttatgtaggtctactctaaatc #### Vps13a_ID4107_16 --> 2 - 0 Original Alignment ttCTGGAAGAAATGTTGACACCTGAAGAAAAGTCGTTACTTTATGAAGCAATTGGTTATAGTGAAACAGCAGTTGACCCAACCTTGCCAAAAACA tgcaaagatgcggtgttatgacggccctccttccctttcccctggtccagttTTGGAAGAAATGTTAACACCTGAGGAAAAATCACTACTCTATGAAGCTATTGGTTATAGTGAAATGGCAGCTGATCCAACCTTGCCGAAAACAgtaaggtagtttactcattctctatccataaacatttagaccatacataa Alignment from CESAR ttCTGGAAGAAATGTTGACACCTGAAGAAAAGTCGTTACTTTATGAAGCAATTGGTTATAGTGAAACAGCAGTTGACCCAACCTTGCCAAAAACA tgcaaagatgcggtgttatgacggccctccttccctttcccctggtccagttTTGGAAGAAATGTTAACACCTGAGGAAAAATCACTACTCTATGAAGCTATTGGTTATAGTGAAATGGCAGCTGATCCAACCTTGCCGAAAACAgtaaggtagtttactcattctctatccataaacatttagaccatacataa Alignment from Spaln_aa2Genome TTCTGGAAGAAATGTTGACACCTGAAGAAAAGTCGTTACTTTATGAAGCAATTGGTTATAGTGAAACAGCAGTTGACCCAACCTTGCCAAAAACA tgcaaagatgcggtgttatgacggccctccttccctttcccctggtccagTTTTGGAAGAAATGTTAACACCTGAGGAAAAATCACTACTCTATGAAGCTATTGGTTATAGTGAAATGGCAGCTGATCCAACCTTGCCGAAAACAgtaaggtagtttactcattctctatccataaacatttagaccatacataa Alignment from Spaln_nt2Genome TTCTGGAAGAAATGTTGACACCTGAAGAAAAGTCGTTACTTTATGAAGCAATTGGTTATAGTGAAACAGCAGTTGACCCAACCTTGCCAAAAACA tgcaaagatgcggtgttatgacggccctccttccctttcccctggtccagTTTTGGAAGAAATGTTAACACCTGAGGAAAAATCACTACTCTATGAAGCTATTGGTTATAGTGAAATGGCAGCTGATCCAACCTTGCCGAAAACAgtaaggtagtttactcattctctatccataaacatttagaccatacataa Alignment from Pairagon TTCTGGAAGAAATGTTGACACCTGAAGAAAAGTCGTTACTTTATGAAGCAATTGGTTATAGTGAAACAGCAGTTGACCCAACCTTGCCAAAAACA tgcaaagatgcggtgttatgacggccctccttccctttcccctggtccagTTTTGGAAGAAATGTTAACACCTGAGGAAAAATCACTACTCTATGAAGCTATTGGTTATAGTGAAATGGCAGCTGATCCAACCTTGCCGAAAACAgtaaggtagtttactcattctctatccataaacatttagaccatacataa Alignment from Exonerate_protein2genome TTCTGGAAGAAATGTTGACACCTGAAGAAAAGTCGTTACTTTATGAAGCAATTGGTTATAGTGAAACAGCAGTTGACCCAACCTTGCCAAAAACA tgcaaagatgcggtgttatgacggccctccttccctttcccctggtccagTTTTGGAAGAAATGTTAACACCTGAGGAAAAATCACTACTCTATGAAGCTATTGGTTATAGTGAAATGGCAGCTGATCCAACCTTGCCGAAAACAgtaaggtagtttactcattctctatccataaacatttagaccatacataa Alignment from Exonerate_coding2genome tgcaaagatgcggtgttatgacggccctccttccctttcccctggtccagttttggaagaaatgttaacacctgaggaaaaatcactactctatgaagctattggttatagtgaaatggcagctgatccaaccttgccgaaaacagtaaggtagtttactcattctctatccataaacatttagaccatacataa Alignment from GeneWise TTCTGGAAGAAATGTTGACACCTGAAGAAAAGTCGTTACTTTATGAAGCAATTGGTTATAGTGAAACAGCAGTTGACCCAACCTTGCCAAAAACA tgcaaagatgcggtgttatgacggccctccttccctttcccctggtccagTTTTGGAAGAAATGTTAACACCTGAGGAAAAATCACTACTCTATGAAGCTATTGGTTATAGTGAAATGGCAGCTGATCCAACCTTGCCGAAAACAgtaaggtagtttactcattctctatccataaacatttagaccatacataa #### Vps13a_ID4113_10 --> 0 - 1 Original Alignment AAAGCCTTGAAAAATGGTATTGTGAATGAAAATATTGTTCCAGAAGGTTATGATTTTg caaatgcatattgcaacacatttgaatgctctttctccttccttcttcagAAAGCCTTGAAAAATGGCATTGTTAATGAAAACATTGCTCCAGAAGGGTATGATTTTagtaagttattaggaatgaaagtagttgtaaggtgtatccaaaccatgttg Alignment from CESAR AAAGCCTTGAAAAATGGTATTGTGAATGAAAATATTGTTCCAGAAGGTTATGATTTTg caaatgcatattgcaacacatttgaatgctctttctccttccttcttcagAAAGCCTTGAAAAATGGCATTGTTAATGAAAACATTGCTCCAGAAGGGTATGATTTTagtaagttattaggaatgaaagtagttgtaaggtgtatccaaaccatgttg Alignment from Spaln_aa2Genome AAAGCCTTGAAAAATGGTATTGTGAATGAAAATATTGTTCCAGAAGGTTATGATTTTG caaatgcatattgcaacacatttgaatgctctttctccttccttcttcagAAAGCCTTGAAAAATGGCATTGTTAATGAAAACATTGCTCCAGAAGGGTATGATTTTAgtaagttattaggaatgaaagtagttgtaaggtgtatccaaaccatgttg Alignment from Spaln_nt2Genome AAAGCCTTGAAAAATGGTATTGTGAATGAAAATATTGTTCCAGAAGGTTATGATTTTG caaatgcatattgcaacacatttgaatgctctttctccttccttcttcagAAAGCCTTGAAAAATGGCATTGTTAATGAAAACATTGCTCCAGAAGGGTATGATTTTAgtaagttattaggaatgaaagtagttgtaaggtgtatccaaaccatgttg Alignment from Pairagon AAAGCCTTGAAAAATGGTATTGTGAATGAAAATATTGTTCCAGAAGGTTATGATTTTG caaatgcatattgcaacacatttgaatgctctttctccttccttcttcagAAAGCCTTGAAAAATGGCATTGTTAATGAAAACATTGCTCCAGAAGGGTATGATTTTAgtaagttattaggaatgaaagtagttgtaaggtgtatccaaaccatgttg Alignment from Exonerate_protein2genome AAAGCCTTGAAAAATGGTATTGTGAATGAAAATATTGTTCCAGAAGGTTATGATTTTG caaatgcatattgcaacacatttgaatgctctttctccttccttcttcagAAAGCCTTGAAAAATGGCATTGTTAATGAAAACATTGCTCCAGAAGGGTATGATTTTAgtaagttattaggaatgaaagtagttgtaaggtgtatccaaaccatgttg Alignment from Exonerate_coding2genome caaatgcatattgcaacacatttgaatgctctttctccttccttcttcagaaagccttgaaaaatggcattgttaatgaaaacattgctccagaagggtatgattttagtaagttattaggaatgaaagtagttgtaaggtgtatccaaaccatgttg Alignment from GeneWise AAAGCCTTGAAAAATGGTATTGTGAATGAAAATATTGTTCCAGAAGGTTATGATTTTG caaatgcatattgcaacacatttgaatgctctttctccttccttcttcagAAAGCCTTGAAAAATGGCATTGTTAATGAAAACATTGCTCCAGAAGGGTATGATTTTAgtaagttattaggaatgaaagtagttgtaaggtgtatccaaaccatgttg #### Vps13a_ID4117_6 --> 2 - 0 Original Alignment aaAAGCCTCGGGAGGAGAAACAGGACACG---------------TTTACAGAAAAGTTAGTTACTCAGATCATACAGAACCTTCAAGTGCAAATCTCCAGCATCCATATTCGTTATGAAGACGAT ttgctgttcactctagcttgtatatctctgtaaaatgttttcgcttctagaaAAGCCCCGG---GAGGAACATGATACATTACGCTGGATGCTCTTCACAGAAAAGCTGGTTCCACAGATCATTCAAAACCTACAAGTCAAGATATCCAGCATCCATATATGTTATAGAGATGATgtatgtgcttattatgacagtagtatgcatatggggtaaagtaatctgtc Alignment from CESAR aaAAGCCTCGGGAGGAGAAACAGGACACG---------------TTTACAGAAAAGTTAGTTACTCAGATCATACAGAACCTTCAAGTGCAAATCTCCAGCATCCATATTCGTTATGAAGACGAT ttgctgttcactctagcttgtatatctctgtaaaatgttttcgcttctagaaAAGCCCCGGGAGGAA---CATGATACATTACGCTGGATGCTCTTCACAGAAAAGCTGGTTCCACAGATCATTCAAAACCTACAAGTCAAGATATCCAGCATCCATATATGTTATAGAGATGATgtatgtgcttattatgacagtagtatgcatatggggtaaagtaatctgtc Alignment from Spaln_aa2Genome AAAAGCCTCGGGAGGAGAAACAGGAC------------ACGTTTACAGAAAAGTTAGTTACTCAGATCATACAGAACCTTCAAGTGCAAATCTCCAGCATCCATATTCGTTATGAAGACGAT ttgctgttcactctagcttgtatatctctgtaaaatgttttcgcttctagAAAAGCCCCGGGAGGAACATGATACATTACGCTGGATGCTCTTCACAGAAAAGCTGGTTCCACAGATCATTCAAAACCTACAAGTCAAGATATCCAGCATCCATATATGTTATAGAGATGATgtatgtgcttattatgacagtagtatgcatatggggtaaagtaatctgtc Alignment from Spaln_nt2Genome AAAAGCCTCGGGAGGA----GAAACAGGACACG--------TTTACAGAAAAGTTAGTTACTCAGATCATACAGAACCTTCAAGTGCAAATCTCCAGCATCCATATTCGTTATGAAGACGAT ttgctgttcactctagcttgtatatctctgtaaaatgttttcgcttctagAAAAGCCCCGGGAGGAACATGATACATTACGCTGGATGCTCTTCACAGAAAAGCTGGTTCCACAGATCATTCAAAACCTACAAGTCAAGATATCCAGCATCCATATATGTTATAGAGATGATgtatgtgcttattatgacagtagtatgcatatggggtaaagtaatctgtc Alignment from Pairagon AAAAGCCTCGGGAGGAGAAACAGGACACG--------------------TTTACAGAAAAGTTAGTTACTCAGATCATACAGAACCTTCAAGTGCAAATCTCCAGCATCCATATTCGTTATGAAGACGAT ttgctgttcactctagcttgtatatctctgtaaaatgttttcgcttctagAAAAGCCCCGGGAGGA--------ACATGATACATTACGCTGGATGCTCTTCACAGAAAAGCTGGTTCCACAGATCATTCAAAACCTACAAGTCAAGATATCCAGCATCCATATATGTTATAGAGATGATgtatgtgcttattatgacagtagtatgcatatggggtaaagtaatctgtc Alignment from Exonerate_protein2genome AAAAGCCTCGGGAGGAGAAACAGGAC------------ACGTTTACAGAAAAGTTAGTTACTCAGATCATACAGAACCTTCAAGTGCAAATCTCCAGCATCCATATTCGTTATGAAGACGAT ttgctgttcactctagcttgtatatctctgtaaaatgttttcgcttctagAAAAGCCCCGGGAGGAACATGATACATTACGCTGGATGCTCTTCACAGAAAAGCTGGTTCCACAGATCATTCAAAACCTACAAGTCAAGATATCCAGCATCCATATATGTTATAGAGATGATgtatgtgcttattatgacagtagtatgcatatggggtaaagtaatctgtc Alignment from Exonerate_coding2genome ttgctgttcactctagcttgtatatctctgtaaaatgttttcgcttctagaaaagccccgggaggaacatgatacattacgctggatgctcttcacagaaaagctggttccacagatcattcaaaacctacaagtcaagatatccagcatccatatatgttatagagatgatgtatgtgcttattatgacagtagtatgcatatggggtaaagtaatctgtc Alignment from GeneWise AAAAGCCTCGGGAGGAGAAACAGGACACG---------------TTTACAGAAAAGTTAGTTACTCAGATCATACAGAACCTTCAAGTGCAAATCTCCAGCATCCATATTCGTTATGAAGACGAT ttgctgttcactctagcttgtatatctctgtaaaatgttttcgcttctagAAAAGCCCCGGGAGGAA---CATGATACATTACGCTGGATGCTCTTCACAGAAAAGCTGGTTCCACAGATCATTCAAAACCTACAAGTCAAGATATCCAGCATCCATATATGTTATAGAGATGATgtatgtgcttattatgacagtagtatgcatatggggtaaagtaatctgtc #### Vps37c_ID2983_3 --> 2 - 0 Original Alignment agAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAG taggttctcagctttaattaaggcaatgtcttcctctctctttaacacagagAAATTTTCCTCAGCCCTGCAGCCTGGGACCTTATTGGACCTCCTGCAGATTGAAGGTATGAAGATTGAGGAGGAGTCAGAGgtaggttaagcatcgctccttgctttggcttattccattaaactgtactg Alignment from CESAR agAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAG taggttctcagctttaattaaggcaatgtcttcctctctctttaacacagagAAATTTTCCTCAGCCCTGCAGCCTGGGACCTTATTGGACCTCCTGCAGATTGAAGGTATGAAGATTGAGGAGGAGTCAGAGgtaggttaagcatcgctccttgctttggcttattccattaaactgtactg Alignment from Spaln_aa2Genome AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAG taggttctcagctttaattaaggcaatgtcttcctctctctttaacacagAGAAATTTTCCTCAGCCCTGCAGCCTGGGACCTTATTGGACCTCCTGCAGATTGAAGGTATGAAGATTGAGGAGGAGTCAGAGgtaggttaagcatcgctccttgctttggcttattccattaaactgtactg Alignment from Spaln_nt2Genome AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAG taggttctcagctttaattaaggcaatgtcttcctctctctttaacacagAGAAATTTTCCTCAGCCCTGCAGCCTGGGACCTTATTGGACCTCCTGCAGATTGAAGGTATGAAGATTGAGGAGGAGTCAGAGgtaggttaagcatcgctccttgctttggcttattccattaaactgtactg Alignment from Pairagon AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAG taggttctcagctttaattaaggcaatgtcttcctctctctttaacacagAGAAATTTTCCTCAGCCCTGCAGCCTGGGACCTTATTGGACCTCCTGCAGATTGAAGGTATGAAGATTGAGGAGGAGTCAGAGgtaggttaagcatcgctccttgctttggcttattccattaaactgtactg Alignment from Exonerate_protein2genome AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAG taggttctcagctttaattaaggcaatgtcttcctctctctttaacacagAGAAATTTTCCTCAGCCCTGCAGCCTGGGACCTTATTGGACCTCCTGCAGATTGAAGGTATGAAGATTGAGGAGGAGTCAGAGgtaggttaagcatcgctccttgctttggcttattccattaaactgtactg Alignment from Exonerate_coding2genome AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAG taggttctcagctttaattaaggcaatgtcttcctctctctttaacacagAGAAATTTTCCTCAGCCCTGCAGCCTGGGACCTTATTGGACCTCCTGCAGATTGAAGGTATGAAGATTGAGGAGGAGTCAGAGgtaggttaagcatcgctccttgctttggcttattccattaaactgtactg Alignment from GeneWise AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAG taggttctcagctttaattaaggcaatgtcttcctctctctttaacacagAGAAATTTTCCTCAGCCCTGCAGCCTGGGACCTTATTGGACCTCCTGCAGATTGAAGGTATGAAGATTGAGGAGGAGTCAGAGgtaggttaagcatcgctccttgctttggcttattccattaaactgtactg #### Vti1a_ID11656_4 --> 0 - 0 Original Alignment AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG gagatatccctggccacctagtgtatcaagaatttccatttcctccacagAAAAGGTCACGGATAGCCTATAGTGACAAAGTACGGAATGAGCTCCTAGGGGACACTGGGAATTCTTCTGAGAACCAGgtaaaagccaagggaatatgttattcttgattatcctaatgatacatttt Alignment from CESAR AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG gagatatccctggccacctagtgtatcaagaatttccatttcctccacagAAAAGGTCACGGATAGCCTATAGTGACAAAGTACGGAATGAGCTCCTAGGGGACACTGGGAATTCTTCTGAGAACCAGgtaaaagccaagggaatatgttattcttgattatcctaatgatacatttt Alignment from Spaln_aa2Genome AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG gagatatccctggccacctagtgtatcaagaatttccatttcctccacagAAAAGGTCACGGATAGCCTATAGTGACAAAGTACGGAATGAGCTCCTAGGGGACACTGGGAATTCTTCTGAGAACCAGgtaaaagccaagggaatatgttattcttgattatcctaatgatacatttt Alignment from Spaln_nt2Genome AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG gagatatccctggccacctagtgtatcaagaatttccatttcctccacagAAAAGGTCACGGATAGCCTATAGTGACAAAGTACGGAATGAGCTCCTAGGGGACACTGGGAATTCTTCTGAGAACCAGgtaaaagccaagggaatatgttattcttgattatcctaatgatacatttt Alignment from Pairagon AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG gagatatccctggccacctagtgtatcaagaatttccatttcctccacagAAAAGGTCACGGATAGCCTATAGTGACAAAGTACGGAATGAGCTCCTAGGGGACACTGGGAATTCTTCTGAGAACCAGgtaaaagccaagggaatatgttattcttgattatcctaatgatacatttt Alignment from Exonerate_protein2genome AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG gagatatccctggccacctagtgtatcaagaatttccatttcctccacagAAAAGGTCACGGATAGCCTATAGTGACAAAGTACGGAATGAGCTCCTAGGGGACACTGGGAATTCTTCTGAGAACCAGgtaaaagccaagggaatatgttattcttgattatcctaatgatacatttt Alignment from Exonerate_coding2genome AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG gagatatccctggccacctagtgtatcaagaatttccatttcctccacagAAAAGGTCACGGATAGCCTATAGTGACAAAGTACGGAATGAGCTCCTAGGGGACACTGGGAATTCTTCTGAGAACCAGgtaaaagccaagggaatatgttattcttgattatcctaatgatacatttt Alignment from GeneWise AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG gagatatccctggccacctagtgtatcaagaatttccatttcctccacagAAAAGGTCACGGATAGCCTATAGTGACAAAGTACGGAATGAGCTCCTAGGGGACACTGGGAATTCTTCTGAGAACCAGgtaaaagccaagggaatatgttattcttgattatcctaatgatacatttt #### Vwa2_ID12233_6 --> 1 - 1 Original Alignment gTGGGACGAGCTGCTCACGCTGGCCAGTGAGCCGAAGGACCGGCATGTGCTGTTGGCTGAGCAAGTGGAGGATGCCACCAATGGCCTCCTCAGCACCCTCAGCAGCTCCGCACTCTGCACCACTGCTGATCCAg acagtgagttgagctatcgtccgttttaactcctttttgcttttgcataggTGGGGTGAGGTGCTCACCCTG---------GCCAAGGACCGGCATGTGTTATTGGCTGAGCAAGCAGAGGATGCTACAAATAGTCTCCTCAGCACCCTCAGCAGCTCAGCACTCTGTACCACGGCTGACCCTggtgagtctcacagggtggtgttaaattgctctgtgcccctcagagaccaa Alignment from CESAR gTGGGACGAGCTGCTCACGCTGGCCAGTGAGCCGAAGGACCGGCATGTGCTGTTGGCTGAGCAAGTGGAGGATGCCACCAATGGCCTCCTCAGCACCCTCAGCAGCTCCGCACTCTGCACCACTGCTGATCCAg acagtgagttgagctatcgtccgttttaactcctttttgcttttgcataggTGGGGTGAGGTGCTCACCCTGGCC---------AAGGACCGGCATGTGTTATTGGCTGAGCAAGCAGAGGATGCTACAAATAGTCTCCTCAGCACCCTCAGCAGCTCAGCACTCTGTACCACGGCTGACCCTggtgagtctcacagggtggtgttaaattgctctgtgcccctcagagaccaa Alignment from Spaln_aa2Genome GTGGGACGAGCTGCTCACGCTGGCCAGTGAGCCGAAGGACCGGCATGTGCTGTTGGCTGAGCAAGTGGAGGATGCCACCAATGGCCTCCTCAGCACCCTCAGCAGCTCCGCACTCTGCACCACTGCTGATCCAG acagtgagttgagctatcgtccgttttaactcctttttgcttttgcatagGTGGGGTGAGGTGCTCACCCTGGCC---------AAGGACCGGCATGTGTTATTGGCTGAGCAAGCAGAGGATGCTACAAATAGTCTCCTCAGCACCCTCAGCAGCTCAGCACTCTGTACCACGGCTGACCCTGgtgagtctcacagggtggtgttaaattgctctgtgcccctcagagaccaa Alignment from Spaln_nt2Genome GTGGGACGAGCTGCTCACGCTGGCCAGTGAGCCGAAGGACCGGCATGTGCTGTTGGCTGAGCAAGTGGAGGATGCCACCAATGGCCTCCTCAGCACCCTCAGCAGCTCCGCACTCTGCACCACTGCTGATCCAG acagtgagttgagctatcgtccgttttaactcctttttgcttttgcatagGTGGGGTGAGGTGCTCACCCTGGCC---------AAGGACCGGCATGTGTTATTGGCTGAGCAAGCAGAGGATGCTACAAATAGTCTCCTCAGCACCCTCAGCAGCTCAGCACTCTGTACCACGGCTGACCCTGgtgagtctcacagggtggtgttaaattgctctgtgcccctcagagaccaa Alignment from Pairagon GTGGGACGAGCTGCTCACGCTGGCCAGTGAGCCGAAGGACCGGCATGTGCTGTTGGCTGAGCAAGTGGAGGATGCCACCAATGGCCTCCTCAGCACCCTCAGCAGCTCCGCACTCTGCACCACTGCTGATCCAG acagtgagttgagctatcgtccgttttaactcctttttgcttttgcatagGTGGGGTGAGGTGCTCACCCTGGCC---------AAGGACCGGCATGTGTTATTGGCTGAGCAAGCAGAGGATGCTACAAATAGTCTCCTCAGCACCCTCAGCAGCTCAGCACTCTGTACCACGGCTGACCCTGgtgagtctcacagggtggtgttaaattgctctgtgcccctcagagaccaa Alignment from Exonerate_protein2genome GTGGGACGAGCTGCTCACGCTGGCCAGTGAGCCGAAGGACCGGCATGTGCTGTTGGCTGAGCAAGTGGAGGATGCCACCAATGGCCTCCTCAGCACCCTCAGCAGCTCCGCACTCTGCACCACTGCTGATCCAG acagtgagttgagctatcgtccgttttaactcctttttgcttttgcatagGTGGGGTGAGGTGCTCACCCTGGCC---------AAGGACCGGCATGTGTTATTGGCTGAGCAAGCAGAGGATGCTACAAATAGTCTCCTCAGCACCCTCAGCAGCTCAGCACTCTGTACCACGGCTGACCCTGgtgagtctcacagggtggtgttaaattgctctgtgcccctcagagaccaa Alignment from Exonerate_coding2genome GTGGGACGAGCTGCTCACGCTGGCCAGTGAGCCGAAGGACCGGCATGTGCTGTTGGCTGAGCAAGTGGAGGATGCCACCAATGGCCTCCTCAGCACCCTCAGCAGCTCCGCACTCTGCACCACTGCTGATCCAG acagtgagttgagctatcgtccgttttaactcctttttgcttttgcatagGTGGGGTGAGGTGCTCACCCTGGCC---------AAGGACCGGCATGTGTTATTGGCTGAGCAAGCAGAGGATGCTACAAATAGTCTCCTCAGCACCCTCAGCAGCTCAGCACTCTGTACCACGGCTGACCCTGgtgagtctcacagggtggtgttaaattgctctgtgcccctcagagaccaa Alignment from GeneWise GTGGGACGAGCTGCTCACGCTGGCCAGTGAGCCGAAGGACCGGCATGTGCTGTTGGCTGAGCAAGTGGAGGATGCCACCAATGGCCTCCTCAGCACCCTCAGCAGCTCCGCACTCTGCACCACTGCTGATCCAG acagtgagttgagctatcgtccgttttaactcctttttgcttttgcatagGTGGGGTGAGGTGCTCACCCTGGCC---------AAGGACCGGCATGTGTTATTGGCTGAGCAAGCAGAGGATGCTACAAATAGTCTCCTCAGCACCCTCAGCAGCTCAGCACTCTGTACCACGGCTGACCCTGgtgagtctcacagggtggtgttaaattgctctgtgcccctcagagaccaa #### Vwa2_ID12238_11 --> 2 - 1 Original Alignment gcTGCCAGGCACAGTCACTGGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCTGTGGGACGTGAGAACTTTGCCCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGGTTTGATGTGAATCCTGATGTGACACAGGTTGGCCTGGTGGTATATGGCAGCCGGGTGCAGACTGCCTTCGGGCTAGACACCCATCCCACCCGGGCTGCCGTGTTGCGGGCCATG------AGCCAGGCTCCCTACCTAGGGGGTGTGGGTTCTGCTGGTACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTCCAGAGGGGTGCCCGCCCCGGTGTCCCCAAGGCCGTGGTGATGCTCACAGGCGGGAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGGCAATGGCATCTCAGTCTTGGTTATGAGC------GTGGGAGCCGTCCTCAGGGAGGCAGTACGGAGGCTTGCCGGTCCACGCGACTCCCTGATCCATGTGGCAGCTTACACAGACCTTCCGTACCATCAGGACATGCTCATC---GAGTGGCTATGTAGAg ctttgattagtgagaatgatgtaagtagtgttcttgattgtattttcaaggcTGTCAGGCACAGTCATTGGAACTTCTATTCCTACTGGATGCCTCAGCTTCAGTGGGGCATGAGAACTTTGCTCACATGCAGAGCTTCATCAGAACATGCACTCTTCGGTTCGATGTAAATCCTGGTGTAACTCATGTCGGAATAGTGGTATATGGTCGC---------CCAGCATTTGGGCAAGACATGCATCCTACACGGGCTGCTGTAGTGAGAACTATGAGCCAGAGCCAAGCTCCCTATCTGGGTAGTGGTGGTTCCGCTGGTGCTGCCCTGCTACATATCGAAGACACAGTGATGATGGATCAGAGGGGCACCCACTCAGGTGTGCCCAATGCTGTGGTAATGGTCACAAGTGGGAGTGGGGCAGAGGATGCAGCAATACCTGCACAGAAATTACGAGGAAATGGCATTTCAGTTCTGGTTAGGAGTGAGCGCGTAGGAGCTGTCCTTAAGGAAGCAGTACCAAGGCTTGTCTGTCCATGTGATTCTTTGATTTATGTTGCAGGCTATATAGACCTACCTTACCACCGTGACATGCTCACTGTGGAATGGCTGTGTCGAggtaatatagcacagatcatattgataatgcattttcctgtgctaactgaa Alignment from CESAR gcTGCCAGGCACAGTCACTGGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCTGTGGGACGTGAGAACTTTGCCCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGGTTTGATGTGAATCCTGATGTGACACAGGTTGGCCTGGTGGTATATGGCAGCCGGGTGCAGACTGCCTTCGGGCTAGACACCCATCCCACCCGGGCTGCCGTGTTGCGGGCCATGAGCCAG------GCTCCCTACCTAGGGGGTGTGGGTTCTGCTGGTACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTCCAGAGGGGTGCCCGCCCCGGTGTCCCCAAGGCCGTGGTGATGCTCACAGGCGGGAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGGCAATGGCATCTCAGTCTTGGTTATGAGC------GTGGGAGCCGTCCTCAGGGAGGCAGTACGGAGGCTTGCCGGTCCACGCGACTCCCTGATCCATGTGGCAGCTTACACAGACCTTCCGTACCATCAGGACATGCTC---ATCGAGTGGCTATGTAGAg ctttgattagtgagaatgatgtaagtagtgttcttgattgtattttcaaggcTGTCAGGCACAGTCATTGGAACTTCTATTCCTACTGGATGCCTCAGCTTCAGTGGGGCATGAGAACTTTGCTCACATGCAGAGCTTCATCAGAACATGCACTCTTCGGTTCGATGTAAATCCTGGTGTAACTCATGTCGGAATAGTGGTATATGGT---------CGCCCAGCATTTGGGCAAGACATGCATCCTACACGGGCTGCTGTAGTGAGAACTATGAGCCAGAGCCAAGCTCCCTATCTGGGTAGTGGTGGTTCCGCTGGTGCTGCCCTGCTACATATCGAAGACACAGTGATGATGGATCAGAGGGGCACCCACTCAGGTGTGCCCAATGCTGTGGTAATGGTCACAAGTGGGAGTGGGGCAGAGGATGCAGCAATACCTGCACAGAAATTACGAGGAAATGGCATTTCAGTTCTGGTTAGGAGTGAGCGCGTAGGAGCTGTCCTTAAGGAAGCAGTACCAAGGCTTGTCTGTCCATGTGATTCTTTGATTTATGTTGCAGGCTATATAGACCTACCTTACCACCGTGACATGCTCACTGTGGAATGGCTGTGTCGAggtaatatagcacagatcatattgataatgcattttcctgtgctaactgaa Alignment from Spaln_aa2Genome GCTGCCAGGCACAGTCACTGGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCTGTGGGACGTGAGAACTTTGCCCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGGTTTGATGTGAATCCTGATGTGACACAGGTTGGCCTGGTGGTATATGGCAGCCGGGTGCAGACTGCCTTCGGGCTAGACACCCATCCCACCCGGGCTGCCGTGTTGCGGGCCATG------AGCCAGGCTCCCTACCTAGGGGGTGTGGGTTCTGCTGGTACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTCCAGAGGGGTGCCCGCCCCGGTGTCCCCAAGGCCGTGGTGATGCTCACAGGCGGGAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGGCAATGGCATCTCAGTCTTGGTTATGAGC------GTGGGAGCCGTCCTCAGGGAGGCAGTACGGAGGCTTGCCGGTCCACGCGACTCCCTGATCCATGTGGCAGCTTACACAGACCTTCCGTACCATCAGGACATGCTC---ATCGAGTGGCTATGTAGAG ctttgattagtgagaatgatgtaagtagtgttcttgattgtattttcaagGCTGTCAGGCACAGTCATTGGAACTTCTATTCCTACTGGATGCCTCAGCTTCAGTGGGGCATGAGAACTTTGCTCACATGCAGAGCTTCATCAGAACATGCACTCTTCGGTTCGATGTAAATCCTGGTGTAACTCATGTCGGAATAGTGGTATATGGT---------CGCCCAGCATTTGGGCAAGACATGCATCCTACACGGGCTGCTGTAGTGAGAACTATGAGCCAGAGCCAAGCTCCCTATCTGGGTAGTGGTGGTTCCGCTGGTGCTGCCCTGCTACATATCGAAGACACAGTGATGATGGATCAGAGGGGCACCCACTCAGGTGTGCCCAATGCTGTGGTAATGGTCACAAGTGGGAGTGGGGCAGAGGATGCAGCAATACCTGCACAGAAATTACGAGGAAATGGCATTTCAGTTCTGGTTAGGAGTGAGCGCGTAGGAGCTGTCCTTAAGGAAGCAGTACCAAGGCTTGTCTGTCCATGTGATTCTTTGATTTATGTTGCAGGCTATATAGACCTACCTTACCACCGTGACATGCTCACTGTGGAATGGCTGTGTCGAGgtaatatagcacagatcatattgataatgcattttcctgtgctaactgaa Alignment from Spaln_nt2Genome GCTGCCAGGCACAGTCACTGGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCTGTGGGACGTGAGAACTTTGCCCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGGTTTGATGTGAATCCTGATGTGACACAGGTTGGCCTGGTGGTATATGGCAGCCGGGTGCAGACTGCCTTCGGGCTAGACACCCATCCCACCCGGGCTGCCGTGTTGCGGGCCATGAGCCAG------GCTCCCTACCTAGGGGGTGTGGGTTCTGCTGGTACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTCCAGAGGGGTGCCCGCCCCGGTGTCCCCAAGGCCGTGGTGATGCTCACAGGCGGGAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGGCAATGGCATCTCAGTCTTGGTTATGAG------CGTGGGAGCCGTCCTCAGGGAGGCAGTACGGAGGCTTGCCGGTCCACGCGACTCCCTGATCCATGTGGCAGCTTACACAGACCTTCCGTACCATCAGGACATGCTCA---TCGAGTGGCTATGTAGAG ctttgattagtgagaatgatgtaagtagtgttcttgattgtattttcaagGCTGTCAGGCACAGTCATTGGAACTTCTATTCCTACTGGATGCCTCAGCTTCAGTGGGGCATGAGAACTTTGCTCACATGCAGAGCTTCATCAGAACATGCACTCTTCGGTTCGATGTAAATCCTGGTGTAACTCATGTCGGAATAGTGGTATATGGTCGCC---------CAGCATTTGGGCAAGACATGCATCCTACACGGGCTGCTGTAGTGAGAACTATGAGCCAGAGCCAAGCTCCCTATCTGGGTAGTGGTGGTTCCGCTGGTGCTGCCCTGCTACATATCGAAGACACAGTGATGATGGATCAGAGGGGCACCCACTCAGGTGTGCCCAATGCTGTGGTAATGGTCACAAGTGGGAGTGGGGCAGAGGATGCAGCAATACCTGCACAGAAATTACGAGGAAATGGCATTTCAGTTCTGGTTAGGAGTGAGCGCGTAGGAGCTGTCCTTAAGGAAGCAGTACCAAGGCTTGTCTGTCCATGTGATTCTTTGATTTATGTTGCAGGCTATATAGACCTACCTTACCACCGTGACATGCTCACTGTGGAATGGCTGTGTCGAGgtaatatagcacagatcatattgataatgcattttcctgtgctaactgaa Alignment from Pairagon GCTGCCAGGCACAGTCACTGGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCTGTGGGACGTGAGAACTTTGCCCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGGTTTGATGTGAATCCTGATGTGACACAGGTTGGCCTGGTGGTATATGGCAGCCGGGTGCAGACTGCCTTCGGGCTAGACACCCATCCCACCCGGGCTGCCGTGTTGCGGGCCATGAGCCAG------GCTCCCTACCTAGGGGGTGTGGGTTCTGCTGGTACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTCCAGAGGGGTGCCCGCCCCGGTGTCCCCAAGGCCGTGGTGATGCTCACAGGCGGGAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGGCAATGGCATCTCAGTCTTGGTTATGA------GCGTGGGAGCCGTCCTCAGGGAGGCAGTACGGAGGCTTGCCGGTCCACGCGACTCCCTGATCCATGTGGCAGCTTACACAGACCTTCCGTACCATCAGGACATGCTCA---TCGAGTGGCTATGTAGAG ctttgattagtgagaatgatgtaagtagtgttcttgattgtattttcaagGCTGTCAGGCACAGTCATTGGAACTTCTATTCCTACTGGATGCCTCAGCTTCAGTGGGGCATGAGAACTTTGCTCACATGCAGAGCTTCATCAGAACATGCACTCTTCGGTTCGATGTAAATCCTGGTGTAACTCATGTCGGAATAGTGGTATATGGTCGCC---------CAGCATTTGGGCAAGACATGCATCCTACACGGGCTGCTGTAGTGAGAACTATGAGCCAGAGCCAAGCTCCCTATCTGGGTAGTGGTGGTTCCGCTGGTGCTGCCCTGCTACATATCGAAGACACAGTGATGATGGATCAGAGGGGCACCCACTCAGGTGTGCCCAATGCTGTGGTAATGGTCACAAGTGGGAGTGGGGCAGAGGATGCAGCAATACCTGCACAGAAATTACGAGGAAATGGCATTTCAGTTCTGGTTAGGAGTGAGCGCGTAGGAGCTGTCCTTAAGGAAGCAGTACCAAGGCTTGTCTGTCCATGTGATTCTTTGATTTATGTTGCAGGCTATATAGACCTACCTTACCACCGTGACATGCTCACTGTGGAATGGCTGTGTCGAGgtaatatagcacagatcatattgataatgcattttcctgtgctaactgaa Alignment from Exonerate_protein2genome GCTGCCAGGCACAGTCACTGGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCTGTGGGACGTGAGAACTTTGCCCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGGTTTGATGTGAATCCTGATGTGACACAGGTTGGCCTGGTGGTATATGGCAGCCGGGTGCAGACTGCCTTCGGGCTAGACACCCATCCCACCCGGGCTGCCGTGTTGCGGGCCATG------AGCCAGGCTCCCTACCTAGGGGGTGTGGGTTCTGCTGGTACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTCCAGAGGGGTGCCCGCCCCGGTGTCCCCAAGGCCGTGGTGATGCTCACAGGCGGGAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGGCAATGGCATCTCAGTCTTGGTTATGAGC------GTGGGAGCCGTCCTCAGGGAGGCAGTACGGAGGCTTGCCGGTCCACGCGACTCCCTGATCCATGTGGCAGCTTACACAGACCTTCCGTACCATCAGGACATGCTC---ATCGAGTGGCTATGTAGAG ctttgattagtgagaatgatgtaagtagtgttcttgattgtattttcaagGCTGTCAGGCACAGTCATTGGAACTTCTATTCCTACTGGATGCCTCAGCTTCAGTGGGGCATGAGAACTTTGCTCACATGCAGAGCTTCATCAGAACATGCACTCTTCGGTTCGATGTAAATCCTGGTGTAACTCATGTCGGAATAGTGGTATATGGT---------CGCCCAGCATTTGGGCAAGACATGCATCCTACACGGGCTGCTGTAGTGAGAACTATGAGCCAGAGCCAAGCTCCCTATCTGGGTAGTGGTGGTTCCGCTGGTGCTGCCCTGCTACATATCGAAGACACAGTGATGATGGATCAGAGGGGCACCCACTCAGGTGTGCCCAATGCTGTGGTAATGGTCACAAGTGGGAGTGGGGCAGAGGATGCAGCAATACCTGCACAGAAATTACGAGGAAATGGCATTTCAGTTCTGGTTAGGAGTGAGCGCGTAGGAGCTGTCCTTAAGGAAGCAGTACCAAGGCTTGTCTGTCCATGTGATTCTTTGATTTATGTTGCAGGCTATATAGACCTACCTTACCACCGTGACATGCTCACTGTGGAATGGCTGTGTCGAGgtaatatagcacagatcatattgataatgcattttcctgtgctaactgaa Alignment from Exonerate_coding2genome GCTGCCAGGCACAGTCACTGGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCTGTGGGACGTGAGAACTTTGCCCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGGTTTGATGTGAATCCTGATGTGACACAGGTTGGCCTGGTGGTATATGGCAGCCGGGTGCAGACTGCCTTCGGGCTAGACACCCATCCCACCCGGGCTGCCGTGTTGCGGGCCATG------AGCCAGGCTCCCTACCTAGGGGGTGTGGGTTCTGCTGGTACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTCCAGAGGGGTGCCCGCCCCGGTGTCCCCAAGGCCGTGGTGATGCTCACAGGCGGGAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGGCAATGGCATCTCAGTCTTGGTTATGAGC------GTGGGAGCCGTCCTCAGGGAGGCAGTACGGAGGCTTGCCGGTCCACGCGACTCCCTGATCCATGTGGCAGCTTACACAGACCTTCCGTACCATCAGGACATGCTC---ATCGAGTGGCTATGTAGAG ctttgattagtgagaatgatgtaagtagtgttcttgattgtattttcaagGCTGTCAGGCACAGTCATTGGAACTTCTATTCCTACTGGATGCCTCAGCTTCAGTGGGGCATGAGAACTTTGCTCACATGCAGAGCTTCATCAGAACATGCACTCTTCGGTTCGATGTAAATCCTGGTGTAACTCATGTCGGAATAGTGGTATATGGT---------CGCCCAGCATTTGGGCAAGACATGCATCCTACACGGGCTGCTGTAGTGAGAACTATGAGCCAGAGCCAAGCTCCCTATCTGGGTAGTGGTGGTTCCGCTGGTGCTGCCCTGCTACATATCGAAGACACAGTGATGATGGATCAGAGGGGCACCCACTCAGGTGTGCCCAATGCTGTGGTAATGGTCACAAGTGGGAGTGGGGCAGAGGATGCAGCAATACCTGCACAGAAATTACGAGGAAATGGCATTTCAGTTCTGGTTAGGAGTGAGCGCGTAGGAGCTGTCCTTAAGGAAGCAGTACCAAGGCTTGTCTGTCCATGTGATTCTTTGATTTATGTTGCAGGCTATATAGACCTACCTTACCACCGTGACATGCTCACTGTGGAATGGCTGTGTCGAGgtaatatagcacagatcatattgataatgcattttcctgtgctaactgaa Alignment from GeneWise GCTGCCAGGCACAGTCACTGGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCTGTGGGACGTGAGAACTTTGCCCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGGTTTGATGTGAATCCTGATGTGACACAGGTTGGCCTGGTGGTATATGGCAGCCGGGTGCAGACTGCCTTCGGGCTAGACACCCATCCCACCCGGGCTGCCGTGTTGCGGGCCATG------AGCCAGGCTCCCTACCTAGGGGGTGTGGGTTCTGCTGGTACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTCCAGAGGGGTGCCCGCCCCGGTGTCCCCAAGGCCGTGGTGATGCTCACAGGCGGGAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGGCAATGGCATCTCAGTCTTGGTTATGAGC------GTGGGAGCCGTCCTCAGGGAGGCAGTACGGAGGCTTGCCGGTCCACGCGACTCCCTGATCCATGTGGCAGCTTACACAGACCTTCCGTACCATCAGGACATGCTC---ATCGAGTGGCTATGTAGAG ctttgattagtgagaatgatgtaagtagtgttcttgattgtattttcaagGCTGTCAGGCACAGTCATTGGAACTTCTATTCCTACTGGATGCCTCAGCTTCAGTGGGGCATGAGAACTTTGCTCACATGCAGAGCTTCATCAGAACATGCACTCTTCGGTTCGATGTAAATCCTGGTGTAACTCATGTCGGAATAGTGGTATATGGT---------CGCCCAGCATTTGGGCAAGACATGCATCCTACACGGGCTGCTGTAGTGAGAACTATGAGCCAGAGCCAAGCTCCCTATCTGGGTAGTGGTGGTTCCGCTGGTGCTGCCCTGCTACATATCGAAGACACAGTGATGATGGATCAGAGGGGCACCCACTCAGGTGTGCCCAATGCTGTGGTAATGGTCACAAGTGGGAGTGGGGCAGAGGATGCAGCAATACCTGCACAGAAATTACGAGGAAATGGCATTTCAGTTCTGGTTAGGAGTGAGCGCGTAGGAGCTGTCCTTAAGGAAGCAGTACCAAGGCTTGTCTGTCCATGTGATTCTTTGATTTATGTTGCAGGCTATATAGACCTACCTTACCACCGTGACATGCTCACTGTGGAATGGCTGTGTCGAGgtaatatagcacagatcatattgataatgcattttcctgtgctaactgaa #### Vwce_ID2952_7 --> 2 - 1 Original Alignment atGTCAACGAGTGTCGGCGGCCACAAGAGAGGAGAGTCTGTCACCACACCTGCCACAACACTGTGGGCAGCTTCCTGTGCACCTGTAGACCTGGTTTCAGGCTTCGATCTGACCGTGTGTCCTGTGAAg ggaaagtgggaagaaaagggtcaatgttcctcatggcctgttcttcacagatATCAACAAGTGTCGGCCACCACAAGAAAAGAGAGTCTGTCATCACACCTGCCACAATGCTGTAGGTAGCTTTCTCTGTACCTGTAGACCTGGTTTTAGACTGCGATCTGATCGCGATTCCTGTGAAggtaagtaggagcttcttggacaactatagctctagtcctgttatctgaag Alignment from CESAR atGTCAACGAGTGTCGGCGGCCACAAGAGAGGAGAGTCTGTCACCACACCTGCCACAACACTGTGGGCAGCTTCCTGTGCACCTGTAGACCTGGTTTCAGGCTTCGATCTGACCGTGTGTCCTGTGAAg ggaaagtgggaagaaaagggtcaatgttcctcatggcctgttcttcacagatATCAACAAGTGTCGGCCACCACAAGAAAAGAGAGTCTGTCATCACACCTGCCACAATGCTGTAGGTAGCTTTCTCTGTACCTGTAGACCTGGTTTTAGACTGCGATCTGATCGCGATTCCTGTGAAggtaagtaggagcttcttggacaactatagctctagtcctgttatctgaag Alignment from Spaln_aa2Genome ATGTCAACGAGTGTCGGCGGCCACAAGAGAGGAGAGTCTGTCACCACACCTGCCACAACACTGTGGGCAGCTTCCTGTGCACCTGTAGACCTGGTTTCAGGCTTCGATCTGACCGTGTGTCCTGTGAAG ggaaagtgggaagaaaagggtcaatgttcctcatggcctgttcttcacagATATCAACAAGTGTCGGCCACCACAAGAAAAGAGAGTCTGTCATCACACCTGCCACAATGCTGTAGGTAGCTTTCTCTGTACCTGTAGACCTGGTTTTAGACTGCGATCTGATCGCGATTCCTGTGAAGgtaagtaggagcttcttggacaactatagctctagtcctgttatctgaag Alignment from Spaln_nt2Genome ATGTCAACGAGTGTCGGCGGCCACAAGAGAGGAGAGTCTGTCACCACACCTGCCACAACACTGTGGGCAGCTTCCTGTGCACCTGTAGACCTGGTTTCAGGCTTCGATCTGACCGTGTGTCCTGTGAAG ggaaagtgggaagaaaagggtcaatgttcctcatggcctgttcttcacagATATCAACAAGTGTCGGCCACCACAAGAAAAGAGAGTCTGTCATCACACCTGCCACAATGCTGTAGGTAGCTTTCTCTGTACCTGTAGACCTGGTTTTAGACTGCGATCTGATCGCGATTCCTGTGAAGgtaagtaggagcttcttggacaactatagctctagtcctgttatctgaag Alignment from Pairagon ATGTCAACGAGTGTCGGCGGCCACAAGAGAGGAGAGTCTGTCACCACACCTGCCACAACACTGTGGGCAGCTTCCTGTGCACCTGTAGACCTGGTTTCAGGCTTCGATCTGACCGTGTGTCCTGTGAAG ggaaagtgggaagaaaagggtcaatgttcctcatggcctgttcttcacagATATCAACAAGTGTCGGCCACCACAAGAAAAGAGAGTCTGTCATCACACCTGCCACAATGCTGTAGGTAGCTTTCTCTGTACCTGTAGACCTGGTTTTAGACTGCGATCTGATCGCGATTCCTGTGAAGgtaagtaggagcttcttggacaactatagctctagtcctgttatctgaag Alignment from Exonerate_protein2genome ATGTCAACGAGTGTCGGCGGCCACAAGAGAGGAGAGTCTGTCACCACACCTGCCACAACACTGTGGGCAGCTTCCTGTGCACCTGTAGACCTGGTTTCAGGCTTCGATCTGACCGTGTGTCCTGTGAAG ggaaagtgggaagaaaagggtcaatgttcctcatggcctgttcttcacagATATCAACAAGTGTCGGCCACCACAAGAAAAGAGAGTCTGTCATCACACCTGCCACAATGCTGTAGGTAGCTTTCTCTGTACCTGTAGACCTGGTTTTAGACTGCGATCTGATCGCGATTCCTGTGAAGgtaagtaggagcttcttggacaactatagctctagtcctgttatctgaag Alignment from Exonerate_coding2genome ATGTCAACGAGTGTCGGCGGCCACAAGAGAGGAGAGTCTGTCACCACACCTGCCACAACACTGTGGGCAGCTTCCTGTGCACCTGTAGACCTGGTTTCAGGCTTCGATCTGACCGTGTGTCCTGTGAAG ggaaagtgggaagaaaagggtcaatgttcctcatggcctgttcttcacagATATCAACAAGTGTCGGCCACCACAAGAAAAGAGAGTCTGTCATCACACCTGCCACAATGCTGTAGGTAGCTTTCTCTGTACCTGTAGACCTGGTTTTAGACTGCGATCTGATCGCGATTCCTGTGAAGgtaagtaggagcttcttggacaactatagctctagtcctgttatctgaag Alignment from GeneWise ATGTCAACGAGTGTCGGCGGCCACAAGAGAGGAGAGTCTGTCACCACACCTGCCACAACACTGTGGGCAGCTTCCTGTGCACCTGTAGACCTGGTTTCAGGCTTCGATCTGACCGTGTGTCCTGTGAAG ggaaagtgggaagaaaagggtcaatgttcctcatggcctgttcttcacagATATCAACAAGTGTCGGCCACCACAAGAAAAGAGAGTCTGTCATCACACCTGCCACAATGCTGTAGGTAGCTTTCTCTGTACCTGTAGACCTGGTTTTAGACTGCGATCTGATCGCGATTCCTGTGAAGgtaagtaggagcttcttggacaactatagctctagtcctgttatctgaag #### Vwce_ID2955_10 --> 2 - 0 Original Alignment gcTGCTTTCACAGTGGCGCTATCCGAGCCGAAGGGGATGTGTTTTCACCTCCTGAGGAGAACTGTACTGTGTGTGTCTGTCTG tattgccagattgaaataaattcttaatttccttctctccccctccctaggcTGCTTTCATAGTGGTGCCATCCGAGCTGAAGGGGATGTATTTTCACCCCCTGAAGAGAACTTTAGCGTGTGTGTCTGTTTGgtaacaatctatatgttatcccataacattgggctaaagaattgactgga Alignment from CESAR gcTGCTTTCACAGTGGCGCTATCCGAGCCGAAGGGGATGTGTTTTCACCTCCTGAGGAGAACTGTACTGTGTGTGTCTGTCTG tattgccagattgaaataaattcttaatttccttctctccccctccctaggcTGCTTTCATAGTGGTGCCATCCGAGCTGAAGGGGATGTATTTTCACCCCCTGAAGAGAACTTTAGCGTGTGTGTCTGTTTGgtaacaatctatatgttatcccataacattgggctaaagaattgactgga Alignment from Spaln_aa2Genome GCTGCTTTCACAGTGGCGCTATCCGAGCCGAAGGGGATGTGTTTTCACCTCCTGAGGAGAACTGTACTGTGTGTGTCTGTCTG tattgccagattgaaataaattcttaatttccttctctccccctccctagGCTGCTTTCATAGTGGTGCCATCCGAGCTGAAGGGGATGTATTTTCACCCCCTGAAGAGAACTTTAGCGTGTGTGTCTGTTTGgtaacaatctatatgttatcccataacattgggctaaagaattgactgga Alignment from Spaln_nt2Genome GCTGCTTTCACAGTGGCGCTATCCGAGCCGAAGGGGATGTGTTTTCACCTCCTGAGGAGAACTGTACTGTGTGTGTCTGTCTG tattgccagattgaaataaattcttaatttccttctctccccctccctagGCTGCTTTCATAGTGGTGCCATCCGAGCTGAAGGGGATGTATTTTCACCCCCTGAAGAGAACTTTAGCGTGTGTGTCTGTTTGgtaacaatctatatgttatcccataacattgggctaaagaattgactgga Alignment from Pairagon GCTGCTTTCACAGTGGCGCTATCCGAGCCGAAGGGGATGTGTTTTCACCTCCTGAGGAGAACTGTACTGTGTGTGTCTGTCTG tattgccagattgaaataaattcttaatttccttctctccccctccctagGCTGCTTTCATAGTGGTGCCATCCGAGCTGAAGGGGATGTATTTTCACCCCCTGAAGAGAACTTTAGCGTGTGTGTCTGTTTGgtaacaatctatatgttatcccataacattgggctaaagaattgactgga Alignment from Exonerate_protein2genome GCTGCTTTCACAGTGGCGCTATCCGAGCCGAAGGGGATGTGTTTTCACCTCCTGAGGAGAACTGTACTGTGTGTGTCTGTCTG tattgccagattgaaataaattcttaatttccttctctccccctccctagGCTGCTTTCATAGTGGTGCCATCCGAGCTGAAGGGGATGTATTTTCACCCCCTGAAGAGAACTTTAGCGTGTGTGTCTGTTTGgtaacaatctatatgttatcccataacattgggctaaagaattgactgga Alignment from Exonerate_coding2genome GCTGCTTTCACAGTGGCGCTATCCGAGCCGAAGGGGATGTGTTTTCACCTCCTGAGGAGAACTGTACTGTGTGTGTCTGTCTG tattgccagattgaaataaattcttaatttccttctctccccctccctagGCTGCTTTCATAGTGGTGCCATCCGAGCTGAAGGGGATGTATTTTCACCCCCTGAAGAGAACTTTAGCGTGTGTGTCTGTTTGgtaacaatctatatgttatcccataacattgggctaaagaattgactgga Alignment from GeneWise GCTGCTTTCACAGTGGCGCTATCCGAGCCGAAGGGGATGTGTTTTCACCTCCTGAGGAGAACTGTACTGTGTGTGTCTGTCTG tattgccagattgaaataaattcttaatttccttctctccccctccctagGCTGCTTTCATAGTGGTGCCATCCGAGCTGAAGGGGATGTATTTTCACCCCCTGAAGAGAACTTTAGCGTGTGTGTCTGTTTGgtaacaatctatatgttatcccataacattgggctaaagaattgactgga #### Vwce_ID2958_13 --> 0 - 1 Original Alignment AATGGGGAGGTAGAGTGCTCCTTCACACCATGTCCAGAGCTGGAGTGCCCTCGAGAGGAGTGGCTGCTGGGCCCAGGACAGTGCTGTTTTACCTGTCGGGAACCCACACCCACCACAg ctatgttggggggttggagattatggttaagtccactttttccctggaagAACGGTGAGGTAGACTGCTCCTTTACACCATGTTCTGAACTCAAGTGTCCTCGTGAGGAATGGCTACTAGGACCAGGACAGTGCTGTGTCACCTGCCGACATCCTACACCCACCACTggtatgtgctggcagcttggaccttcaaggttgcctgttcactctgatggt Alignment from CESAR AATGGGGAGGTAGAGTGCTCCTTCACACCATGTCCAGAGCTGGAGTGCCCTCGAGAGGAGTGGCTGCTGGGCCCAGGACAGTGCTGTTTTACCTGTCGGGAACCCACACCCACCACAg ctatgttggggggttggagattatggttaagtccactttttccctggaagAACGGTGAGGTAGACTGCTCCTTTACACCATGTTCTGAACTCAAGTGTCCTCGTGAGGAATGGCTACTAGGACCAGGACAGTGCTGTGTCACCTGCCGACATCCTACACCCACCACTggtatgtgctggcagcttggaccttcaaggttgcctgttcactctgatggt Alignment from Spaln_aa2Genome AATGGGGAGGTAGAGTGCTCCTTCACACCATGTCCAGAGCTGGAGTGCCCTCGAGAGGAGTGGCTGCTGGGCCCAGGACAGTGCTGTTTTACCTGTCGGGAACCCACACCCACCACAG ctatgttggggggttggagattatggttaagtccactttttccctggaagAACGGTGAGGTAGACTGCTCCTTTACACCATGTTCTGAACTCAAGTGTCCTCGTGAGGAATGGCTACTAGGACCAGGACAGTGCTGTGTCACCTGCCGACATCCTACACCCACCACTGgtatgtgctggcagcttggaccttcaaggttgcctgttcactctgatggt Alignment from Spaln_nt2Genome AATGGGGAGGTAGAGTGCTCCTTCACACCATGTCCAGAGCTGGAGTGCCCTCGAGAGGAGTGGCTGCTGGGCCCAGGACAGTGCTGTTTTACCTGTCGGGAACCCACACCCACCACAG ctatgttggggggttggagattatggttaagtccactttttccctggaagAACGGTGAGGTAGACTGCTCCTTTACACCATGTTCTGAACTCAAGTGTCCTCGTGAGGAATGGCTACTAGGACCAGGACAGTGCTGTGTCACCTGCCGACATCCTACACCCACCACTGgtatgtgctggcagcttggaccttcaaggttgcctgttcactctgatggt Alignment from Pairagon AATGGGGAGGTAGAGTGCTCCTTCACACCATGTCCAGAGCTGGAGTGCCCTCGAGAGGAGTGGCTGCTGGGCCCAGGACAGTGCTGTTTTACCTGTCGGGAACCCACACCCACCACAG ctatgttggggggttggagattatggttaagtccactttttccctggaagAACGGTGAGGTAGACTGCTCCTTTACACCATGTTCTGAACTCAAGTGTCCTCGTGAGGAATGGCTACTAGGACCAGGACAGTGCTGTGTCACCTGCCGACATCCTACACCCACCACTGgtatgtgctggcagcttggaccttcaaggttgcctgttcactctgatggt Alignment from Exonerate_protein2genome AATGGGGAGGTAGAGTGCTCCTTCACACCATGTCCAGAGCTGGAGTGCCCTCGAGAGGAGTGGCTGCTGGGCCCAGGACAGTGCTGTTTTACCTGTCGGGAACCCACACCCACCACAG ctatgttggggggttggagattatggttaagtccactttttccctggaagAACGGTGAGGTAGACTGCTCCTTTACACCATGTTCTGAACTCAAGTGTCCTCGTGAGGAATGGCTACTAGGACCAGGACAGTGCTGTGTCACCTGCCGACATCCTACACCCACCACTGgtatgtgctggcagcttggaccttcaaggttgcctgttcactctgatggt Alignment from Exonerate_coding2genome AATGGGGAGGTAGAGTGCTCCTTCACACCATGTCCAGAGCTGGAGTGCCCTCGAGAGGAGTGGCTGCTGGGCCCAGGACAGTGCTGTTTTACCTGTCGGGAACCCACACCCACCACAGGC ctatgttggggggttggagattatggttaagtccactttttccctggaagAACGGTGAGGTAGACTGCTCCTTTACACCATGTTCTGAACTCAAGTGTCCTCGTGAGGAATGGCTACTAGGACCAGGACAGTGCTGTGTCACCTGCCGACATCCTACACCCACCACTGGTatgtgctggcagcttggaccttcaaggttgcctgttcactctgatggt Alignment from GeneWise AATGGGGAGGTAGAGTGCTCCTTCACACCATGTCCAGAGCTGGAGTGCCCTCGAGAGGAGTGGCTGCTGGGCCCAGGACAGTGCTGTTTTACCTGTCGGGAACCCACACCCACCACAG ctatgttggggggttggagattatggttaagtccactttttccctggaagAACGGTGAGGTAGACTGCTCCTTTACACCATGTTCTGAACTCAAGTGTCCTCGTGAGGAATGGCTACTAGGACCAGGACAGTGCTGTGTCACCTGCCGACATCCTACACCCACCACTGgtatgtgctggcagcttggaccttcaaggttgcctgttcactctgatggt #### Vwce_ID2964_18 --> 2 - 0 Original Alignment acTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG attacttcccagactcccctgcccttgcagcttctcacttcctttcacagacTGTAACTTTGAAGGGAGAAAGGTAGTCAATGGTCAGGTTTTCACCTTAGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtaagtgggatagagaacctggagctaacggtttgccctcatggaaactt Alignment from CESAR acTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG attacttcccagactcccctgcccttgcagcttctcacttcctttcacagacTGTAACTTTGAAGGGAGAAAGGTAGTCAATGGTCAGGTTTTCACCTTAGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtaagtgggatagagaacctggagctaacggtttgccctcatggaaactt Alignment from Spaln_aa2Genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG attacttcccagactcccctgcccttgcagcttctcacttcctttcacagACTGTAACTTTGAAGGGAGAAAGGTAGTCAATGGTCAGGTTTTCACCTTAGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtaagtgggatagagaacctggagctaacggtttgccctcatggaaactt Alignment from Spaln_nt2Genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG attacttcccagactcccctgcccttgcagcttctcacttcctttcacagACTGTAACTTTGAAGGGAGAAAGGTAGTCAATGGTCAGGTTTTCACCTTAGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtaagtgggatagagaacctggagctaacggtttgccctcatggaaactt Alignment from Pairagon ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG attacttcccagactcccctgcccttgcagcttctcacttcctttcacagACTGTAACTTTGAAGGGAGAAAGGTAGTCAATGGTCAGGTTTTCACCTTAGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtaagtgggatagagaacctggagctaacggtttgccctcatggaaactt Alignment from Exonerate_protein2genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG attacttcccagactcccctgcccttgcagcttctcacttcctttcacagACTGTAACTTTGAAGGGAGAAAGGTAGTCAATGGTCAGGTTTTCACCTTAGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtaagtgggatagagaacctggagctaacggtttgccctcatggaaactt Alignment from Exonerate_coding2genome attacttcccagactcccctgcccttgcagcttctcacttcctttcacagactgtaactttgaagggagaaaggtagtcaatggtcaggttttcaccttagatgatgagccctgtacccggtgcatctgccaggtaagtgggatagagaacctggagctaacggtttgccctcatggaaactt Alignment from GeneWise ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG attacttcccagactcccctgcccttgcagcttctcacttcctttcacagACTGTAACTTTGAAGGGAGAAAGGTAGTCAATGGTCAGGTTTTCACCTTAGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtaagtgggatagagaacctggagctaacggtttgccctcatggaaactt #### Wdr74_ID2312_2 --> 2 - 0 Original Alignment ggGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA aagttggtgtattcagccacctcagtatgagctgactcctgtctccacagggGTGAACCTTCAGCGTAAACACACAGCCAATTTTGCTCCATTGGGACAACCACGGAGGGAGCAGGCTGTGAATGCTCTGTGCTGGGGTACCGGCAGTGAGACCCAAgtacggaggccatatctctgtaaaaggcgcaagagctgtagaatttccga Alignment from CESAR ggGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA aagttggtgtattcagccacctcagtatgagctgactcctgtctccacagggGTGAACCTTCAGCGTAAACACACAGCCAATTTTGCTCCATTGGGACAACCACGGAGGGAGCAGGCTGTGAATGCTCTGTGCTGGGGTACCGGCAGTGAGACCCAAgtacggaggccatatctctgtaaaaggcgcaagagctgtagaatttccga Alignment from Spaln_aa2Genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA aagttggtgtattcagccacctcagtatgagctgactcctgtctccacagGGGTGAACCTTCAGCGTAAACACACAGCCAATTTTGCTCCATTGGGACAACCACGGAGGGAGCAGGCTGTGAATGCTCTGTGCTGGGGTACCGGCAGTGAGACCCAAgtacggaggccatatctctgtaaaaggcgcaagagctgtagaatttccga Alignment from Spaln_nt2Genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA aagttggtgtattcagccacctcagtatgagctgactcctgtctccacagGGGTGAACCTTCAGCGTAAACACACAGCCAATTTTGCTCCATTGGGACAACCACGGAGGGAGCAGGCTGTGAATGCTCTGTGCTGGGGTACCGGCAGTGAGACCCAAgtacggaggccatatctctgtaaaaggcgcaagagctgtagaatttccga Alignment from Pairagon GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA aagttggtgtattcagccacctcagtatgagctgactcctgtctccacagGGGTGAACCTTCAGCGTAAACACACAGCCAATTTTGCTCCATTGGGACAACCACGGAGGGAGCAGGCTGTGAATGCTCTGTGCTGGGGTACCGGCAGTGAGACCCAAgtacggaggccatatctctgtaaaaggcgcaagagctgtagaatttccga Alignment from Exonerate_protein2genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA aagttggtgtattcagccacctcagtatgagctgactcctgtctccacagGGGTGAACCTTCAGCGTAAACACACAGCCAATTTTGCTCCATTGGGACAACCACGGAGGGAGCAGGCTGTGAATGCTCTGTGCTGGGGTACCGGCAGTGAGACCCAAgtacggaggccatatctctgtaaaaggcgcaagagctgtagaatttccga Alignment from Exonerate_coding2genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA aagttggtgtattcagccacctcagtatgagctgactcctgtctccacagGGGTGAACCTTCAGCGTAAACACACAGCCAATTTTGCTCCATTGGGACAACCACGGAGGGAGCAGGCTGTGAATGCTCTGTGCTGGGGTACCGGCAGTGAGACCCAAgtacggaggccatatctctgtaaaaggcgcaagagctgtagaatttccga Alignment from GeneWise ----------------------------------------------------GTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA AAGTTGGTGTATTCAGCCACCTCAGTATGAGCTGACTCCTGTCTCCACAGGGGTGAACCTTCAGCGTAAACACACAGCCAATTTTGCTCCATTGGGACAACCACGGAGGGAGCAGGCTGTGAATGCTCTGTGCTGGGGTACCGGCAGTGAGACCCAAgtacggaggccatatctctgtaaaaggcgcaagagctgtagaatttccga #### Wdr96_ID10335_36 --> 0 - 0 Original Alignment TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGTGTTATAGATAAG gtacttctagcaaaatcaacaattgagttcaacccatgttttgtttgtagTACCTAAATGAACCAAACTACAGGAATGTAATCACTATACTGATTGGGATTATGGAGCAGACAATTGGTGTTGTAGATAAGgtgagtgctaaagcgtacaaactaattaagccatagtccactataatgct Alignment from CESAR TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGTGTTATAGATAAG gtacttctagcaaaatcaacaattgagttcaacccatgttttgtttgtagTACCTAAATGAACCAAACTACAGGAATGTAATCACTATACTGATTGGGATTATGGAGCAGACAATTGGTGTTGTAGATAAGgtgagtgctaaagcgtacaaactaattaagccatagtccactataatgct Alignment from Spaln_aa2Genome TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGTGTTATAGATAAG gtacttctagcaaaatcaacaattgagttcaacccatgttttgtttgtagTACCTAAATGAACCAAACTACAGGAATGTAATCACTATACTGATTGGGATTATGGAGCAGACAATTGGTGTTGTAGATAAGgtgagtgctaaagcgtacaaactaattaagccatagtccactataatgct Alignment from Spaln_nt2Genome TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGTGTTATAGATAAG gtacttctagcaaaatcaacaattgagttcaacccatgttttgtttgtagTACCTAAATGAACCAAACTACAGGAATGTAATCACTATACTGATTGGGATTATGGAGCAGACAATTGGTGTTGTAGATAAGgtgagtgctaaagcgtacaaactaattaagccatagtccactataatgct Alignment from Pairagon TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGTGTTATAGATAAG gtacttctagcaaaatcaacaattgagttcaacccatgttttgtttgtagTACCTAAATGAACCAAACTACAGGAATGTAATCACTATACTGATTGGGATTATGGAGCAGACAATTGGTGTTGTAGATAAGgtgagtgctaaagcgtacaaactaattaagccatagtccactataatgct Alignment from Exonerate_protein2genome TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGTGTTATAGATAAG gtacttctagcaaaatcaacaattgagttcaacccatgttttgtttgtagTACCTAAATGAACCAAACTACAGGAATGTAATCACTATACTGATTGGGATTATGGAGCAGACAATTGGTGTTGTAGATAAGgtgagtgctaaagcgtacaaactaattaagccatagtccactataatgct Alignment from Exonerate_coding2genome TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGTGTTATAGATAAG gtacttctagcaaaatcaacaattgagttcaacccatgttttgtttgtagTACCTAAATGAACCAAACTACAGGAATGTAATCACTATACTGATTGGGATTATGGAGCAGACAATTGGTGTTGTAGATAAGgtgagtgctaaagcgtacaaactaattaagccatagtccactataatgct Alignment from GeneWise TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGTGTTATAGATAAG gtacttctagcaaaatcaacaattgagttcaacccatgttttgtttgtagTACCTAAATGAACCAAACTACAGGAATGTAATCACTATACTGATTGGGATTATGGAGCAGACAATTGGTGTTGTAGATAAGgtgagtgctaaagcgtacaaactaattaagccatagtccactataatgct #### Wdr96_ID10336_35 --> 0 - 0 Original Alignment ACTCAAGGACAAAAGAAAGTTGCTAGCATGATGGAAAGTAAAGAGGTCCACAAAGGAATCTATCAGATTGAGTGGGAGCACAAGAAGATGGAGATGGAGATGGAGGACCTAAACCAGAGGGCCTGGGACATCGAGATGCTCTTCTTCTCACGAGACCGGCAGAAG agagaagtcaagacttgacacttattttccattaacttttcttcccccagACTCAAGGACAAAAGAAAGTTGCTAGCACTATGGAAAGTAAAGAGGTCCATAAGGGCATTTATCAGATTGAGTGGGAACATAGGAAGATGGAGATGGAGATGGAGGACCTAAATCAAAGGGCTTGGGACATCGAGATGCTCTTCTTTTCACGAGACCGGCAGAAGgtgggtccaacctagcccacctttgtccatgtgagcagcttagctcagct Alignment from CESAR ACTCAAGGACAAAAGAAAGTTGCTAGCATGATGGAAAGTAAAGAGGTCCACAAAGGAATCTATCAGATTGAGTGGGAGCACAAGAAGATGGAGATGGAGATGGAGGACCTAAACCAGAGGGCCTGGGACATCGAGATGCTCTTCTTCTCACGAGACCGGCAGAAG agagaagtcaagacttgacacttattttccattaacttttcttcccccagACTCAAGGACAAAAGAAAGTTGCTAGCACTATGGAAAGTAAAGAGGTCCATAAGGGCATTTATCAGATTGAGTGGGAACATAGGAAGATGGAGATGGAGATGGAGGACCTAAATCAAAGGGCTTGGGACATCGAGATGCTCTTCTTTTCACGAGACCGGCAGAAGgtgggtccaacctagcccacctttgtccatgtgagcagcttagctcagct Alignment from Spaln_aa2Genome ACTCAAGGACAAAAGAAAGTTGCTAGCATGATGGAAAGTAAAGAGGTCCACAAAGGAATCTATCAGATTGAGTGGGAGCACAAGAAGATGGAGATGGAGATGGAGGACCTAAACCAGAGGGCCTGGGACATCGAGATGCTCTTCTTCTCACGAGACCGGCAGAAG agagaagtcaagacttgacacttattttccattaacttttcttcccccagACTCAAGGACAAAAGAAAGTTGCTAGCACTATGGAAAGTAAAGAGGTCCATAAGGGCATTTATCAGATTGAGTGGGAACATAGGAAGATGGAGATGGAGATGGAGGACCTAAATCAAAGGGCTTGGGACATCGAGATGCTCTTCTTTTCACGAGACCGGCAGAAGgtgggtccaacctagcccacctttgtccatgtgagcagcttagctcagct Alignment from Spaln_nt2Genome ACTCAAGGACAAAAGAAAGTTGCTAGCATGATGGAAAGTAAAGAGGTCCACAAAGGAATCTATCAGATTGAGTGGGAGCACAAGAAGATGGAGATGGAGATGGAGGACCTAAACCAGAGGGCCTGGGACATCGAGATGCTCTTCTTCTCACGAGACCGGCAGAAG agagaagtcaagacttgacacttattttccattaacttttcttcccccagACTCAAGGACAAAAGAAAGTTGCTAGCACTATGGAAAGTAAAGAGGTCCATAAGGGCATTTATCAGATTGAGTGGGAACATAGGAAGATGGAGATGGAGATGGAGGACCTAAATCAAAGGGCTTGGGACATCGAGATGCTCTTCTTTTCACGAGACCGGCAGAAGgtgggtccaacctagcccacctttgtccatgtgagcagcttagctcagct Alignment from Pairagon ACTCAAGGACAAAAGAAAGTTGCTAGCATGATGGAAAGTAAAGAGGTCCACAAAGGAATCTATCAGATTGAGTGGGAGCACAAGAAGATGGAGATGGAGATGGAGGACCTAAACCAGAGGGCCTGGGACATCGAGATGCTCTTCTTCTCACGAGACCGGCAGAAG agagaagtcaagacttgacacttattttccattaacttttcttcccccagACTCAAGGACAAAAGAAAGTTGCTAGCACTATGGAAAGTAAAGAGGTCCATAAGGGCATTTATCAGATTGAGTGGGAACATAGGAAGATGGAGATGGAGATGGAGGACCTAAATCAAAGGGCTTGGGACATCGAGATGCTCTTCTTTTCACGAGACCGGCAGAAGgtgggtccaacctagcccacctttgtccatgtgagcagcttagctcagct Alignment from Exonerate_protein2genome ACTCAAGGACAAAAGAAAGTTGCTAGCATGATGGAAAGTAAAGAGGTCCACAAAGGAATCTATCAGATTGAGTGGGAGCACAAGAAGATGGAGATGGAGATGGAGGACCTAAACCAGAGGGCCTGGGACATCGAGATGCTCTTCTTCTCACGAGACCGGCAGAAG agagaagtcaagacttgacacttattttccattaacttttcttcccccagACTCAAGGACAAAAGAAAGTTGCTAGCACTATGGAAAGTAAAGAGGTCCATAAGGGCATTTATCAGATTGAGTGGGAACATAGGAAGATGGAGATGGAGATGGAGGACCTAAATCAAAGGGCTTGGGACATCGAGATGCTCTTCTTTTCACGAGACCGGCAGAAGgtgggtccaacctagcccacctttgtccatgtgagcagcttagctcagct Alignment from Exonerate_coding2genome ACTCAAGGACAAAAGAAAGTTGCTAGCATGATGGAAAGTAAAGAGGTCCACAAAGGAATCTATCAGATTGAGTGGGAGCACAAGAAGATGGAGATGGAGATGGAGGACCTAAACCAGAGGGCCTGGGACATCGAGATGCTCTTCTTCTCACGAGACCGGCAGAAG agagaagtcaagacttgacacttattttccattaacttttcttcccccagACTCAAGGACAAAAGAAAGTTGCTAGCACTATGGAAAGTAAAGAGGTCCATAAGGGCATTTATCAGATTGAGTGGGAACATAGGAAGATGGAGATGGAGATGGAGGACCTAAATCAAAGGGCTTGGGACATCGAGATGCTCTTCTTTTCACGAGACCGGCAGAAGgtgggtccaacctagcccacctttgtccatgtgagcagcttagctcagct Alignment from GeneWise ACTCAAGGACAAAAGAAAGTTGCTAGCATGATGGAAAGTAAAGAGGTCCACAAAGGAATCTATCAGATTGAGTGGGAGCACAAGAAGATGGAGATGGAGATGGAGGACCTAAACCAGAGGGCCTGGGACATCGAGATGCTCTTCTTCTCACGAGACCGGCAGAAG agagaagtcaagacttgacacttattttccattaacttttcttcccccagACTCAAGGACAAAAGAAAGTTGCTAGCACTATGGAAAGTAAAGAGGTCCATAAGGGCATTTATCAGATTGAGTGGGAACATAGGAAGATGGAGATGGAGATGGAGGACCTAAATCAAAGGGCTTGGGACATCGAGATGCTCTTCTTTTCACGAGACCGGCAGAAGgtgggtccaacctagcccacctttgtccatgtgagcagcttagctcagct #### Wdr96_ID10338_33 --> 0 - 2 Original Alignment GTGAAGCAGAAGGCAGCCTGCCTCCTGGAAATGACGACTTTTCTCCGGAAGCGGATGGAAGAGGATGACGTAGTGCATCATGAGATCGAAAAAGTGTTCCATGAGCTCATCcg gaatgtatctgcaatgtgtgtgtgtgacgtttttgcttccattgaaacagGTCAAGCAGAAA------TGCCTCTTGCAGATGACAACATTTCTTCGCAAGCAGATAGAGGAAGAGGATGTGGTCCATCATGAGATTGAAACAGTCTTCCATAAGCTCGTTtggtattgccctttgtccctactagtcagggcttagacaacatgtgctgtct Alignment from CESAR GTGAAGCAGAAGGCAGCCTGCCTCCTGGAAATGACGACTTTTCTCCGGAAGCGGATGGAAGAGGATGACGTAGTGCATCATGAGATCGAAAAAGTGTTCCATGAGCTCATCcg gaatgtatctgcaatgtgtgtgtgtgacgtttttgcttccattgaaacagGTCAAGCAGAAA------TGCCTCTTGCAGATGACAACATTTCTTCGCAAGCAGATAGAGGAAGAGGATGTGGTCCATCATGAGATTGAAACAGTCTTCCATAAGCTCGTTtggtattgccctttgtccctactagtcagggcttagacaacatgtgctgtct Alignment from Spaln_aa2Genome TACAAAGTGAAGCAGAAGGCAGCCTGCCTCCTGGAAATGACGACTTTTCTCCGGAAGCGGATGGAAGAGGATGACGTAGTGCATCATGAGATCGAAAAAGTGTTCCATGAGCTCATCCG gaatgtatctgcaatgtgtgtgtgtgacgtttttgcttccattgaaacag------GTCAAGCAGAAA------TGCCTCTTGCAGATGACAACATTTCTTCGCAAGCAGATAGAGGAAGAGGATGTGGTCCATCATGAGATTGAAACAGTCTTCCATAAGCTCGTTTGgtattgccctttgtccctactagtcagggcttagacaacatgtgctgtct Alignment from Spaln_nt2Genome GTGAAGCAGAAGGCAGCCTGCCTCCTGGAAATGACGACTTTTCTCCGGAAGCGGATGGAAGAGGATGACGTAGTGCATCATGAGATCGAAAAAGTGTTCCATGAGCTCATCCG gaatgtatctgcaatgtgtgtgtgtgacgtttttgcttccattgaaacagGTCAAGCAGAA------ATGCCTCTTGCAGATGACAACATTTCTTCGCAAGCAGATAGAGGAAGAGGATGTGGTCCATCATGAGATTGAAACAGTCTTCCATAAGCTCGTTTGgtattgccctttgtccctactagtcagggcttagacaacatgtgctgtct Alignment from Pairagon TACAAAGTGAAGCAGAAGGCAGCCTGCCTCCTGGAAATGACGACTTTTCTCCGGAAGCGGATGGAAGAGGATGACGTAGTGCATCATGAGATCGAAAAAGTGTTCCATGAGCTCATCCG gaatgtatctgcaatgtgtgtgtgtgacgtttttgcttccattgaaacag------GTCAAGCAGAAA------TGCCTCTTGCAGATGACAACATTTCTTCGCAAGCAGATAGAGGAAGAGGATGTGGTCCATCATGAGATTGAAACAGTCTTCCATAAGCTCGTTTGgtattgccctttgtccctactagtcagggcttagacaacatgtgctgtct Alignment from Exonerate_protein2genome TACAAAGTGAAGCAGAAGGCAGCCTGCCTCCTGGAAATGACGACTTTTCTCCGGAAGCGGATGGAAGAGGATGACGTAGTGCATCATGAGATCGAAAAAGTGTTCCATGAGCTCATCCG gaatgtatctgcaatgtgtgtgtgtgacgtttttgcttccattgAAACAGGTCAAGCAGAAA------TGCCTCTTGCAGATGACAACATTTCTTCGCAAGCAGATAGAGGAAGAGGATGTGGTCCATCATGAGATTGAAACAGTCTTCCATAAGCTCGTTTGgtattgccctttgtccctactagtcagggcttagacaacatgtgctgtct Alignment from Exonerate_coding2genome gaatgtatctgcaatgtgtgtgtgtgacgtttttgcttccattgaaacaggtcaagcagaaatgcctcttgcagatgacaacatttcttcgcaagcagatagaggaagaggatgtggtccatcatgagattgaaacagtcttccataagctcgtttggtattgccctttgtccctactagtcagggcttagacaacatgtgctgtct Alignment from GeneWise TACAAAGTGAAGCAGAAGGCAGCCTGCCTCCTGGAAATGACGACTTTTCTCCGGAAGCGGATGGAAGAGGATGACGTAGTGCATCATGAGATCGAAAAAGTGTTCCATGAGCTCATCCG gaatgtatctgcaatgtgtgtgtgtgacgtttttgcttccattgaaacagGTCAAGCAGAAA------------TGCCTCTTGCAGATGACAACATTTCTTCGCAAGCAGATAGAGGAAGAGGATGTGGTCCATCATGAGATTGAAACAGTCTTCCATAAGCTCGTTTGgtattgccctttgtccctactagtcagggcttagacaacatgtgctgtct #### Wdr96_ID10344_27 --> 0 - 0 Original Alignment GTGATCCCTCAACCACCTTTCATGGCGAAAGCTGATGCTCTGTGGAGTGAAGATGAAAGGAAGCAATTCAAAGAGTACGAGAAAAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAGTACAGAAAG gggtagtgatgatatcacgagtagcctatagcctgttccttcttttctagGTGTTCCCGCAACCACCTTTCATGGCAAAAGCTGATGCATTATGGAGTGAAGATGAACGGAAGCAATTTAAAGAGTATGAGAAAAAAGTCAAAGAACTGAATGAAGAGAGAGACAAGTACAGAAAAgtatgtttgggaattaactggagtcagtaaattcatctgactcattctcc Alignment from CESAR GTGATCCCTCAACCACCTTTCATGGCGAAAGCTGATGCTCTGTGGAGTGAAGATGAAAGGAAGCAATTCAAAGAGTACGAGAAAAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAGTACAGAAAG gggtagtgatgatatcacgagtagcctatagcctgttccttcttttctagGTGTTCCCGCAACCACCTTTCATGGCAAAAGCTGATGCATTATGGAGTGAAGATGAACGGAAGCAATTTAAAGAGTATGAGAAAAAAGTCAAAGAACTGAATGAAGAGAGAGACAAGTACAGAAAAgtatgtttgggaattaactggagtcagtaaattcatctgactcattctcc Alignment from Spaln_aa2Genome GTGATCCCTCAACCACCTTTCATGGCGAAAGCTGATGCTCTGTGGAGTGAAGATGAAAGGAAGCAATTCAAAGAGTACGAGAAAAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAGTACAGAAAG gggtagtgatgatatcacgagtagcctatagcctgttccttcttttctagGTGTTCCCGCAACCACCTTTCATGGCAAAAGCTGATGCATTATGGAGTGAAGATGAACGGAAGCAATTTAAAGAGTATGAGAAAAAAGTCAAAGAACTGAATGAAGAGAGAGACAAGTACAGAAAAgtatgtttgggaattaactggagtcagtaaattcatctgactcattctcc Alignment from Spaln_nt2Genome GTGATCCCTCAACCACCTTTCATGGCGAAAGCTGATGCTCTGTGGAGTGAAGATGAAAGGAAGCAATTCAAAGAGTACGAGAAAAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAGTACAGAAAG gggtagtgatgatatcacgagtagcctatagcctgttccttcttttctagGTGTTCCCGCAACCACCTTTCATGGCAAAAGCTGATGCATTATGGAGTGAAGATGAACGGAAGCAATTTAAAGAGTATGAGAAAAAAGTCAAAGAACTGAATGAAGAGAGAGACAAGTACAGAAAAgtatgtttgggaattaactggagtcagtaaattcatctgactcattctcc Alignment from Pairagon GTGATCCCTCAACCACCTTTCATGGCGAAAGCTGATGCTCTGTGGAGTGAAGATGAAAGGAAGCAATTCAAAGAGTACGAGAAAAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAGTACAGAAAG gggtagtgatgatatcacgagtagcctatagcctgttccttcttttctagGTGTTCCCGCAACCACCTTTCATGGCAAAAGCTGATGCATTATGGAGTGAAGATGAACGGAAGCAATTTAAAGAGTATGAGAAAAAAGTCAAAGAACTGAATGAAGAGAGAGACAAGTACAGAAAAgtatgtttgggaattaactggagtcagtaaattcatctgactcattctcc Alignment from Exonerate_protein2genome GTGATCCCTCAACCACCTTTCATGGCGAAAGCTGATGCTCTGTGGAGTGAAGATGAAAGGAAGCAATTCAAAGAGTACGAGAAAAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAGTACAGAAAG gggtagtgatgatatcacgagtagcctatagcctgttccttcttttctagGTGTTCCCGCAACCACCTTTCATGGCAAAAGCTGATGCATTATGGAGTGAAGATGAACGGAAGCAATTTAAAGAGTATGAGAAAAAAGTCAAAGAACTGAATGAAGAGAGAGACAAGTACAGAAAAgtatgtttgggaattaactggagtcagtaaattcatctgactcattctcc Alignment from Exonerate_coding2genome GTGATCCCTCAACCACCTTTCATGGCGAAAGCTGATGCTCTGTGGAGTGAAGATGAAAGGAAGCAATTCAAAGAGTACGAGAAAAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAGTACAGAAAG gggtagtgatgatatcacgagtagcctatagcctgttccttcttttctagGTGTTCCCGCAACCACCTTTCATGGCAAAAGCTGATGCATTATGGAGTGAAGATGAACGGAAGCAATTTAAAGAGTATGAGAAAAAAGTCAAAGAACTGAATGAAGAGAGAGACAAGTACAGAAAAgtatgtttgggaattaactggagtcagtaaattcatctgactcattctcc Alignment from GeneWise GTGATCCCTCAACCACCTTTCATGGCGAAAGCTGATGCTCTGTGGAGTGAAGATGAAAGGAAGCAATTCAAAGAGTACGAGAAAAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAGTACAGAAAG gggtagtgatgatatcacgagtagcctatagcctgttccttcttttctagGTGTTCCCGCAACCACCTTTCATGGCAAAAGCTGATGCATTATGGAGTGAAGATGAACGGAAGCAATTTAAAGAGTATGAGAAAAAAGTCAAAGAACTGAATGAAGAGAGAGACAAGTACAGAAAAgtatgtttgggaattaactggagtcagtaaattcatctgactcattctcc #### Wdr96_ID10348_23 --> 0 - 0 Original Alignment CTCCGGAAAGAGATTGTGGAGGTCCAGGCGACAACCACTATAGCTAAGAAACACCACGAGGAGGAGGAGGAGGAGGAAGAGGATGAAGAAAGGACAATAAAAACTACCAGTCTGCCCAATTACCTGCTTGGTAGTTTGAGCACTGATTTTGGGGCGGACACATCTTTGTTGACAAGCCAACTGGACCTTCATTCCAGAGAGGAGAAAATCAACCAAATTATATTGCTAAAG caaatgattttgacttaaataaatccctgctgtgttctccctgctgacagCTCCGGAGGGAGATAGTGGGGGTCCGGGCAACAACTAGTATCGCTAAAAAGCACCATGATGAGGAAGAGGAGGAAGAAGAGGATGAAGAAAGAACAATAAAAGCAACGAGTCTACCCAACTACTTGCTTGGTAGTCTAAGCAGTGATTTTGGAGCAGACACAGCTCTATGGACAGGGCAACTGGAACTCCATTCCAGAAAGGAAAAAATCAATCAAATTATCTCACTAAAGgttagtaagttgtgtcatgactgaaacaacgcatgagcctgacatcactt Alignment from CESAR CTCCGGAAAGAGATTGTGGAGGTCCAGGCGACAACCACTATAGCTAAGAAACACCACGAGGAGGAGGAGGAGGAGGAAGAGGATGAAGAAAGGACAATAAAAACTACCAGTCTGCCCAATTACCTGCTTGGTAGTTTGAGCACTGATTTTGGGGCGGACACATCTTTGTTGACAAGCCAACTGGACCTTCATTCCAGAGAGGAGAAAATCAACCAAATTATATTGCTAAAG caaatgattttgacttaaataaatccctgctgtgttctccctgctgacagCTCCGGAGGGAGATAGTGGGGGTCCGGGCAACAACTAGTATCGCTAAAAAGCACCATGATGAGGAAGAGGAGGAAGAAGAGGATGAAGAAAGAACAATAAAAGCAACGAGTCTACCCAACTACTTGCTTGGTAGTCTAAGCAGTGATTTTGGAGCAGACACAGCTCTATGGACAGGGCAACTGGAACTCCATTCCAGAAAGGAAAAAATCAATCAAATTATCTCACTAAAGgttagtaagttgtgtcatgactgaaacaacgcatgagcctgacatcactt Alignment from Spaln_aa2Genome CTCCGGAAAGAGATTGTGGAGGTCCAGGCGACAACCACTATAGCTAAGAAACACCACGAGGAGGAGGAGGAGGAGGAAGAGGATGAAGAAAGGACAATAAAAACTACCAGTCTGCCCAATTACCTGCTTGGTAGTTTGAGCACTGATTTTGGGGCGGACACATCTTTGTTGACAAGCCAACTGGACCTTCATTCCAGAGAGGAGAAAATCAACCAAATTATATTGCTAAAG caaatgattttgacttaaataaatccctgctgtgttctccctgctgacagCTCCGGAGGGAGATAGTGGGGGTCCGGGCAACAACTAGTATCGCTAAAAAGCACCATGATGAGGAAGAGGAGGAAGAAGAGGATGAAGAAAGAACAATAAAAGCAACGAGTCTACCCAACTACTTGCTTGGTAGTCTAAGCAGTGATTTTGGAGCAGACACAGCTCTATGGACAGGGCAACTGGAACTCCATTCCAGAAAGGAAAAAATCAATCAAATTATCTCACTAAAGgttagtaagttgtgtcatgactgaaacaacgcatgagcctgacatcactt Alignment from Spaln_nt2Genome CTCCGGAAAGAGATTGTGGAGGTCCAGGCGACAACCACTATAGCTAAGAAACACCACGAGGAGGAGGAGGAGGAGGAAGAGGATGAAGAAAGGACAATAAAAACTACCAGTCTGCCCAATTACCTGCTTGGTAGTTTGAGCACTGATTTTGGGGCGGACACATCTTTGTTGACAAGCCAACTGGACCTTCATTCCAGAGAGGAGAAAATCAACCAAATTATATTGCTAAAG caaatgattttgacttaaataaatccctgctgtgttctccctgctgacagCTCCGGAGGGAGATAGTGGGGGTCCGGGCAACAACTAGTATCGCTAAAAAGCACCATGATGAGGAAGAGGAGGAAGAAGAGGATGAAGAAAGAACAATAAAAGCAACGAGTCTACCCAACTACTTGCTTGGTAGTCTAAGCAGTGATTTTGGAGCAGACACAGCTCTATGGACAGGGCAACTGGAACTCCATTCCAGAAAGGAAAAAATCAATCAAATTATCTCACTAAAGgttagtaagttgtgtcatgactgaaacaacgcatgagcctgacatcactt Alignment from Pairagon CTCCGGAAAGAGATTGTGGAGGTCCAGGCGACAACCACTATAGCTAAGAAACACCACGAGGAGGAGGAGGAGGAGGAAGAGGATGAAGAAAGGACAATAAAAACTACCAGTCTGCCCAATTACCTGCTTGGTAGTTTGAGCACTGATTTTGGGGCGGACACATCTTTGTTGACAAGCCAACTGGACCTTCATTCCAGAGAGGAGAAAATCAACCAAATTATATTGCTAAAG caaatgattttgacttaaataaatccctgctgtgttctccctgctgacagCTCCGGAGGGAGATAGTGGGGGTCCGGGCAACAACTAGTATCGCTAAAAAGCACCATGATGAGGAAGAGGAGGAAGAAGAGGATGAAGAAAGAACAATAAAAGCAACGAGTCTACCCAACTACTTGCTTGGTAGTCTAAGCAGTGATTTTGGAGCAGACACAGCTCTATGGACAGGGCAACTGGAACTCCATTCCAGAAAGGAAAAAATCAATCAAATTATCTCACTAAAGgttagtaagttgtgtcatgactgaaacaacgcatgagcctgacatcactt Alignment from Exonerate_protein2genome CTCCGGAAAGAGATTGTGGAGGTCCAGGCGACAACCACTATAGCTAAGAAACACCACGAGGAGGAGGAGGAGGAGGAAGAGGATGAAGAAAGGACAATAAAAACTACCAGTCTGCCCAATTACCTGCTTGGTAGTTTGAGCACTGATTTTGGGGCGGACACATCTTTGTTGACAAGCCAACTGGACCTTCATTCCAGAGAGGAGAAAATCAACCAAATTATATTGCTAAAG caaatgattttgacttaaataaatccctgctgtgttctccctgctgacagCTCCGGAGGGAGATAGTGGGGGTCCGGGCAACAACTAGTATCGCTAAAAAGCACCATGATGAGGAAGAGGAGGAAGAAGAGGATGAAGAAAGAACAATAAAAGCAACGAGTCTACCCAACTACTTGCTTGGTAGTCTAAGCAGTGATTTTGGAGCAGACACAGCTCTATGGACAGGGCAACTGGAACTCCATTCCAGAAAGGAAAAAATCAATCAAATTATCTCACTAAAGgttagtaagttgtgtcatgactgaaacaacgcatgagcctgacatcactt Alignment from Exonerate_coding2genome CTCCGGAAAGAGATTGTGGAGGTCCAGGCGACAACCACTATAGCTAAGAAACACCACGAGGAGGAGGAGGAGGAGGAAGAGGATGAAGAAAGGACAATAAAAACTACCAGTCTGCCCAATTACCTGCTTGGTAGTTTGAGCACTGATTTTGGGGCGGACACATCTTTGTTGACAAGCCAACTGGACCTTCATTCCAGAGAGGAGAAAATCAACCAAATTATATTGCTAAAG caaatgattttgacttaaataaatccctgctgtgttctccctgctgacagCTCCGGAGGGAGATAGTGGGGGTCCGGGCAACAACTAGTATCGCTAAAAAGCACCATGATGAGGAAGAGGAGGAAGAAGAGGATGAAGAAAGAACAATAAAAGCAACGAGTCTACCCAACTACTTGCTTGGTAGTCTAAGCAGTGATTTTGGAGCAGACACAGCTCTATGGACAGGGCAACTGGAACTCCATTCCAGAAAGGAAAAAATCAATCAAATTATCTCACTAAAGgttagtaagttgtgtcatgactgaaacaacgcatgagcctgacatcactt Alignment from GeneWise CTCCGGAAAGAGATTGTGGAGGTCCAGGCGACAACCACTATAGCTAAGAAACACCACGAGGAGGAGGAGGAGGAGGAAGAGGATGAAGAAAGGACAATAAAAACTACCAGTCTGCCCAATTACCTGCTTGGTAGTTTGAGCACTGATTTTGGGGCGGACACATCTTTGTTGACAAGCCAACTGGACCTTCATTCCAGAGAGGAGAAAATCAACCAAATTATATTGCTAAAG caaatgattttgacttaaataaatccctgctgtgttctccctgctgacagCTCCGGAGGGAGATAGTGGGGGTCCGGGCAACAACTAGTATCGCTAAAAAGCACCATGATGAGGAAGAGGAGGAAGAAGAGGATGAAGAAAGAACAATAAAAGCAACGAGTCTACCCAACTACTTGCTTGGTAGTCTAAGCAGTGATTTTGGAGCAGACACAGCTCTATGGACAGGGCAACTGGAACTCCATTCCAGAAAGGAAAAAATCAATCAAATTATCTCACTAAAGgttagtaagttgtgtcatgactgaaacaacgcatgagcctgacatcactt #### Wdr96_ID10350_21 --> 0 - 0 Original Alignment ATAAGGAAAGATGTGGAGATGCACAACTTGGCCCAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCTGTGAAGGGCCGGGCTCTAAAG gcagaatttcgtttcacatccttcctttactggcgtgcttttccaaccagTTAAGGAAGGGTGTGGAGATGCACAATTTAACACAGAGCTACATAACGGAACTTATCAAGGAAGAGTGTTGGACCTCCATGGTTGTCAAAGGACGAGCACTACGGgttagctccaactgctagtgcatgcaaatatgtatgtctgaggtgtggct Alignment from CESAR ATAAGGAAAGATGTGGAGATGCACAACTTGGCCCAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCTGTGAAGGGCCGGGCTCTAAAG gcagaatttcgtttcacatccttcctttactggcgtgcttttccaaccagTTAAGGAAGGGTGTGGAGATGCACAATTTAACACAGAGCTACATAACGGAACTTATCAAGGAAGAGTGTTGGACCTCCATGGTTGTCAAAGGACGAGCACTACGGgttagctccaactgctagtgcatgcaaatatgtatgtctgaggtgtggct Alignment from Spaln_aa2Genome ATAAGGAAAGATGTGGAGATGCACAACTTGGCCCAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCTGTGAAGGGCCGGGCTCTAAAG gcagaatttcgtttcacatccttcctttactggcgtgcttttccaaccagTTAAGGAAGGGTGTGGAGATGCACAATTTAACACAGAGCTACATAACGGAACTTATCAAGGAAGAGTGTTGGACCTCCATGGTTGTCAAAGGACGAGCACTACGGgttagctccaactgctagtgcatgcaaatatgtatgtctgaggtgtggct Alignment from Spaln_nt2Genome ATAAGGAAAGATGTGGAGATGCACAACTTGGCCCAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCTGTGAAGGGCCGGGCTCTAAAG gcagaatttcgtttcacatccttcctttactggcgtgcttttccaaccagTTAAGGAAGGGTGTGGAGATGCACAATTTAACACAGAGCTACATAACGGAACTTATCAAGGAAGAGTGTTGGACCTCCATGGTTGTCAAAGGACGAGCACTACGGgttagctccaactgctagtgcatgcaaatatgtatgtctgaggtgtggct Alignment from Pairagon ATAAGGAAAGATGTGGAGATGCACAACTTGGCCCAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCTGTGAAGGGCCGGGCTCTAAAG gcagaatttcgtttcacatccttcctttactggcgtgcttttccaaccagTTAAGGAAGGGTGTGGAGATGCACAATTTAACACAGAGCTACATAACGGAACTTATCAAGGAAGAGTGTTGGACCTCCATGGTTGTCAAAGGACGAGCACTACGGgttagctccaactgctagtgcatgcaaatatgtatgtctgaggtgtggct Alignment from Exonerate_protein2genome ATAAGGAAAGATGTGGAGATGCACAACTTGGCCCAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCTGTGAAGGGCCGGGCTCTAAAG gcagaatttcgtttcacatccttcctttactggcgtgcttttccaaccagTTAAGGAAGGGTGTGGAGATGCACAATTTAACACAGAGCTACATAACGGAACTTATCAAGGAAGAGTGTTGGACCTCCATGGTTGTCAAAGGACGAGCACTACGGgttagctccaactgctagtgcatgcaaatatgtatgtctgaggtgtggct Alignment from Exonerate_coding2genome ATAAGGAAAGATGTGGAGATGCACAACTTGGCCCAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCTGTGAAGGGCCGGGCTCTAAAG gcagaatttcgtttcacatccttcctttactggcgtgcttttccaaccagTTAAGGAAGGGTGTGGAGATGCACAATTTAACACAGAGCTACATAACGGAACTTATCAAGGAAGAGTGTTGGACCTCCATGGTTGTCAAAGGACGAGCACTACGGgttagctccaactgctagtgcatgcaaatatgtatgtctgaggtgtggct Alignment from GeneWise ATAAGGAAAGATGTGGAGATGCACAACTTGGCCCAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCTGTGAAGGGCCGGGCTCTAAAG gcagaatttcgtttcacatccttcctttactggcgtgcttttccaaccagTTAAGGAAGGGTGTGGAGATGCACAATTTAACACAGAGCTACATAACGGAACTTATCAAGGAAGAGTGTTGGACCTCCATGGTTGTCAAAGGACGAGCACTACGGgttagctccaactgctagtgcatgcaaatatgtatgtctgaggtgtggct #### Wdr96_ID10358_13 --> 2 - 1 Original Alignment agACGGGCAAGGACATCCTGCAGATATCCACGGTGTCTGTCATGGAGTCAGATGTGGTCGAAGTGCTGGTGTTGTACCCGCTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACCCTGCCAGTCATGTTACCAGAAg aatacttccattctccttcctatgtctacttccgcggactcccatctcagacACCGGTAAGGACATCCAATATATATCCACCATATCTGTAATGGAATCAGACGTAGTAGCTGTCTTAGTCTTGTATCCACTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACCCTACCAGTTATGTTACCAGAAggtaagtttaaatcgatccccaccctgtgatacagtgacatcccatgtccc Alignment from CESAR agACGGGCAAGGACATCCTGCAGATATCCACGGTGTCTGTCATGGAGTCAGATGTGGTCGAAGTGCTGGTGTTGTACCCGCTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACCCTGCCAGTCATGTTACCAGAAg aatacttccattctccttcctatgtctacttccgcggactcccatctcagacACCGGTAAGGACATCCAATATATATCCACCATATCTGTAATGGAATCAGACGTAGTAGCTGTCTTAGTCTTGTATCCACTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACCCTACCAGTTATGTTACCAGAAggtaagtttaaatcgatccccaccctgtgatacagtgacatcccatgtccc Alignment from Spaln_aa2Genome AGACGGGCAAGGACATCCTGCAGATATCCACGGTGTCTGTCATGGAGTCAGATGTGGTCGAAGTGCTGGTGTTGTACCCGCTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACCCTGCCAGTCATGTTACCAGAAG aatacttccattctccttcctatgtctacttccgcggactcccatctcagACACCGGTAAGGACATCCAATATATATCCACCATATCTGTAATGGAATCAGACGTAGTAGCTGTCTTAGTCTTGTATCCACTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACCCTACCAGTTATGTTACCAGAAGgtaagtttaaatcgatccccaccctgtgatacagtgacatcccatgtccc Alignment from Spaln_nt2Genome AGACGGGCAAGGACATCCTGCAGATATCCACGGTGTCTGTCATGGAGTCAGATGTGGTCGAAGTGCTGGTGTTGTACCCGCTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACCCTGCCAGTCATGTTACCAGAAG aatacttccattctccttcctatgtctacttccgcggactcccatctcagACACCGGTAAGGACATCCAATATATATCCACCATATCTGTAATGGAATCAGACGTAGTAGCTGTCTTAGTCTTGTATCCACTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACCCTACCAGTTATGTTACCAGAAGgtaagtttaaatcgatccccaccctgtgatacagtgacatcccatgtccc Alignment from Pairagon AGACGGGCAAGGACATCCTGCAGATATCCACGGTGTCTGTCATGGAGTCAGATGTGGTCGAAGTGCTGGTGTTGTACCCGCTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACCCTGCCAGTCATGTTACCAGAAG aatacttccattctccttcctatgtctacttccgcggactcccatctcagACACCGGTAAGGACATCCAATATATATCCACCATATCTGTAATGGAATCAGACGTAGTAGCTGTCTTAGTCTTGTATCCACTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACCCTACCAGTTATGTTACCAGAAGgtaagtttaaatcgatccccaccctgtgatacagtgacatcccatgtccc Alignment from Exonerate_protein2genome AGACGGGCAAGGACATCCTGCAGATATCCACGGTGTCTGTCATGGAGTCAGATGTGGTCGAAGTGCTGGTGTTGTACCCGCTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACCCTGCCAGTCATGTTACCAGAAG aatacttccattctccttcctatgtctacttccgcggactcccatctcagACACCGGTAAGGACATCCAATATATATCCACCATATCTGTAATGGAATCAGACGTAGTAGCTGTCTTAGTCTTGTATCCACTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACCCTACCAGTTATGTTACCAGAAGgtaagtttaaatcgatccccaccctgtgatacagtgacatcccatgtccc Alignment from Exonerate_coding2genome AGACGGGCAAGGACATCCTGCAGATATCCACGGTGTCTGTCATGGAGTCAGATGTGGTCGAAGTGCTGGTGTTGTACCCGCTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACCCTGCCAGTCATGTTACCAGAAG aatacttccattctccttcctatgtctacttccgcggactcccatctcagACACCGGTAAGGACATCCAATATATATCCACCATATCTGTAATGGAATCAGACGTAGTAGCTGTCTTAGTCTTGTATCCACTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACCCTACCAGTTATGTTACCAGAAGgtaagtttaaatcgatccccaccctgtgatacagtgacatcccatgtccc Alignment from GeneWise AGACGGGCAAGGACATCCTGCAGATATCCACGGTGTCTGTCATGGAGTCAGATGTGGTCGAAGTGCTGGTGTTGTACCCGCTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACCCTGCCAGTCATGTTACCAGAAG aatacttccattctccttcctatgtctacttccgcggactcccatctcagACACCGGTAAGGACATCCAATATATATCCACCATATCTGTAATGGAATCAGACGTAGTAGCTGTCTTAGTCTTGTATCCACTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACCCTACCAGTTATGTTACCAGAAGgtaagtttaaatcgatccccaccctgtgatacagtgacatcccatgtccc #### Wdr96_ID10364_7 --> 2 - 0 Original Alignment atGGAGCCCCGCTCATCAACCCA---CTCACGCTGGTGTACCAAAAGGACGGCATACTCGCTTCTGGAATT caagctatgcagcatgattatcgctactgtaactaacttttcctcactaggcAGGGCCCCACTCGTCAACCCACTTATCACACTAATATTCCAGAAGGACAGAATTGTTGCATCAGGAGCGgtaggggatactcaggacccctcaatttcattgcaaataatagaaatagg Alignment from CESAR atGGAGCCCCGCTCATCAACCCACTC---ACGCTGGTGTACCAAAAGGACGGCATACTCGCTTCTGGAATT caagctatgcagcatgattatcgctactgtaactaacttttcctcactaggcAGGGCCCCACTCGTCAACCCACTTATCACACTAATATTCCAGAAGGACAGAATTGTTGCATCAGGAGCGgtaggggatactcaggacccctcaatttcattgcaaataatagaaatagg Alignment from Spaln_aa2Genome ATGGAGCCCCGCTCATCAACCCACTC---ACGCTGGTGTACCAAAAGGACGGCATACTCGCTTCTGGAATT caagctatgcagcatgattatcgctactgtaactaacttttcctcactagGCAGGGCCCCACTCGTCAACCCACTTATCACACTAATATTCCAGAAGGACAGAATTGTTGCATCAGGAGCGgtaggggatactcaggacccctcaatttcattgcaaataatagaaatagg Alignment from Spaln_nt2Genome ATGGAGCCCCGCTCATCAACCCACT---CACGCTGGTGTACCAAAAGGACGGCATACTCGCTTCTGGAATT caagctatgcagcatgattatcgctactgtaactaacttttcctcactagGCAGGGCCCCACTCGTCAACCCACTTATCACACTAATATTCCAGAAGGACAGAATTGTTGCATCAGGAGCGgtaggggatactcaggacccctcaatttcattgcaaataatagaaatagg Alignment from Pairagon caagctatgcagcatgattatcgctactgtaactaacttttcctcactaggcagggccccactcgtcaacccacttatcacactaatattccagaaggacagaattgttgcatcaggagcggtaggggatactcaggacccctcaatttcattgcaaataatagaaatagg Alignment from Exonerate_protein2genome ATGGAGCCCCGCTCATCAACCCACTC---ACGCTGGTGTACCAAAAGGACGGCATACTCGCTTCTGGAATT caagctatgcagcatgattatcgctactgtaactaacttttcctcactagGCAGGGCCCCACTCGTCAACCCACTTATCACACTAATATTCCAGAAGGACAGAATTGTTGCATCAGGAGCGgtaggggatactcaggacccctcaatttcattgcaaataatagaaatagg Alignment from Exonerate_coding2genome caagctatgcagcatgattatcgctactgtaactaacttttcctcactaggcagggccccactcgtcaacccacttatcacactaatattccagaaggacagaattgttgcatcaggagcggtaggggatactcaggacccctcaatttcattgcaaataatagaaatagg Alignment from GeneWise ATGGAGCCCCGCTCATCAACCCACTC---ACGCTGGTGTACCAAAAGGACGGCATACTCGCTTCTGGAATT caagctatgcagcatgattatcgctactgtaactaacttttcctcactagGCAGGGCCCCACTCGTCAACCCACTTATCACACTAATATTCCAGAAGGACAGAATTGTTGCATCAGGAGCGgtaggggatactcaggacccctcaatttcattgcaaataatagaaatagg #### Wdr96_ID10365_6 --> 0 - 1 Original Alignment CCGAAAGATGACATATATCCTCTGCTTCACCCAACTATGCACTGCTGGACTCCGTCAAGCGACCTGTACGTTGGGTGTGAAGAGGGTCATCTTCTGATGATTAACACAGAAACCCTGAAGGTGACCGTGCTCCAGAAGGCGGAGGAGTTTCCACTTCCGg ataatgttctaatgttagaataaagacttgtctgtgtctctctctcctagCCAAAAGATGACATCTATCCTTTGCTTCAACCAACAATGCACTGTTGGACTCCATCAAGTGACTTATATGTTGGTTGTGAAGAAGGTCATCCTTTGATGATTAATACAGAAACTTTGAAGGTGACTGTACTGCAGAAGGCAGAGGAGTTTCCCCTACCAggtattgcaatactcctgatcaagtgctgtctgaatacttttgcagagagt Alignment from CESAR CCGAAAGATGACATATATCCTCTGCTTCACCCAACTATGCACTGCTGGACTCCGTCAAGCGACCTGTACGTTGGGTGTGAAGAGGGTCATCTTCTGATGATTAACACAGAAACCCTGAAGGTGACCGTGCTCCAGAAGGCGGAGGAGTTTCCACTTCCGg ataatgttctaatgttagaataaagacttgtctgtgtctctctctcctagCCAAAAGATGACATCTATCCTTTGCTTCAACCAACAATGCACTGTTGGACTCCATCAAGTGACTTATATGTTGGTTGTGAAGAAGGTCATCCTTTGATGATTAATACAGAAACTTTGAAGGTGACTGTACTGCAGAAGGCAGAGGAGTTTCCCCTACCAggtattgcaatactcctgatcaagtgctgtctgaatacttttgcagagagt Alignment from Spaln_aa2Genome CCGAAAGATGACATATATCCTCTGCTTCACCCAACTATGCACTGCTGGACTCCGTCAAGCGACCTGTACGTTGGGTGTGAAGAGGGTCATCTTCTGATGATTAACACAGAAACCCTGAAGGTGACCGTGCTCCAGAAGGCGGAGGAGTTTCCACTTCCGG ataatgttctaatgttagaataaagacttgtctgtgtctctctctcctagCCAAAAGATGACATCTATCCTTTGCTTCAACCAACAATGCACTGTTGGACTCCATCAAGTGACTTATATGTTGGTTGTGAAGAAGGTCATCCTTTGATGATTAATACAGAAACTTTGAAGGTGACTGTACTGCAGAAGGCAGAGGAGTTTCCCCTACCAGgtattgcaatactcctgatcaagtgctgtctgaatacttttgcagagagt Alignment from Spaln_nt2Genome CCGAAAGATGACATATATCCTCTGCTTCACCCAACTATGCACTGCTGGACTCCGTCAAGCGACCTGTACGTTGGGTGTGAAGAGGGTCATCTTCTGATGATTAACACAGAAACCCTGAAGGTGACCGTGCTCCAGAAGGCGGAGGAGTTTCCACTTCCGG ataatgttctaatgttagaataaagacttgtctgtgtctctctctcctagCCAAAAGATGACATCTATCCTTTGCTTCAACCAACAATGCACTGTTGGACTCCATCAAGTGACTTATATGTTGGTTGTGAAGAAGGTCATCCTTTGATGATTAATACAGAAACTTTGAAGGTGACTGTACTGCAGAAGGCAGAGGAGTTTCCCCTACCAGgtattgcaatactcctgatcaagtgctgtctgaatacttttgcagagagt Alignment from Pairagon CCGAAAGATGACATATATCCTCTGCTTCACCCAACTATGCACTGCTGGACTCCGTCAAGCGACCTGTACGTTGGGTGTGAAGAGGGTCATCTTCTGATGATTAACACAGAAACCCTGAAGGTGACCGTGCTCCAGAAGGCGGAGGAGTTTCCACTTCCGG ataatgttctaatgttagaataaagacttgtctgtgtctctctctcctagCCAAAAGATGACATCTATCCTTTGCTTCAACCAACAATGCACTGTTGGACTCCATCAAGTGACTTATATGTTGGTTGTGAAGAAGGTCATCCTTTGATGATTAATACAGAAACTTTGAAGGTGACTGTACTGCAGAAGGCAGAGGAGTTTCCCCTACCAGgtattgcaatactcctgatcaagtgctgtctgaatacttttgcagagagt Alignment from Exonerate_protein2genome CCGAAAGATGACATATATCCTCTGCTTCACCCAACTATGCACTGCTGGACTCCGTCAAGCGACCTGTACGTTGGGTGTGAAGAGGGTCATCTTCTGATGATTAACACAGAAACCCTGAAGGTGACCGTGCTCCAGAAGGCGGAGGAGTTTCCACTTCCGG ataatgttctaatgttagaataaagacttgtctgtgtctctctctcctagCCAAAAGATGACATCTATCCTTTGCTTCAACCAACAATGCACTGTTGGACTCCATCAAGTGACTTATATGTTGGTTGTGAAGAAGGTCATCCTTTGATGATTAATACAGAAACTTTGAAGGTGACTGTACTGCAGAAGGCAGAGGAGTTTCCCCTACCAGgtattgcaatactcctgatcaagtgctgtctgaatacttttgcagagagt Alignment from Exonerate_coding2genome CCGAAAGATGACATATATCCTCTGCTTCACCCAACTATGCACTGCTGGACTCCGTCAAGCGACCTGTACGTTGGGTGTGAAGAGGGTCATCTTCTGATGATTAACACAGAAACCCTGAAGGTGACCGTGCTCCAGAAGGCGGAGGAGTTTCCACTTCCGGATGGAGCCCCGCTCATCAACCCACTCACGCTG---GTGTACCAAAAGGAC ataatgttctaatgttagaataaagacttgtctgtgtctctctctcctagCCAAAAGATGACATCTATCCTTTGCTTCAACCAACAATGCACTGTTGGACTCCATCAAGTGACTTATATGTTGGTTGTGAAGAAGGTCATCCTTTGATGATTAATACAGAAACTTTGAAGGTGACTGTACTGCAGAAGGCAGAGGAGTTTCCCCTACCAGGTATTGCAATACTCCTGATCAAGTGCTGTCTGAATACTTTTGCAGAGAGT Alignment from GeneWise CCGAAAGATGACATATATCCTCTGCTTCACCCAACTATGCACTGCTGGACTCCGTCAAGCGACCTGTACGTTGGGTGTGAAGAGGGTCATCTTCTGATGATTAACACAGAAACCCTGAAGGTGACCGTGCTCCAGAAGGCGGAGGAGTTTCCACTTCCGG ataatgttctaatgttagaataaagacttgtctgtgtctctctctcctagCCAAAAGATGACATCTATCCTTTGCTTCAACCAACAATGCACTGTTGGACTCCATCAAGTGACTTATATGTTGGTTGTGAAGAAGGTCATCCTTTGATGATTAATACAGAAACTTTGAAGGTGACTGTACTGCAGAAGGCAGAGGAGTTTCCCCTACCAGgtattgcaatactcctgatcaagtgctgtctgaatacttttgcagagagt #### Wdr96_ID10366_5 --> 1 - 0 Original Alignment gTCTGTCAAGCTACCCCTAGAAGACGCGACCTTCCTAAACGAGCCCGACATGCTTTTCCCCACCACTCTGCCAAAGGAT---------------CTCATTTATGGACCCGTATTGCCACTGTCGGCCATTGCCGGGCTGGTAGGCGAAGAGGCAGAGACTTTCAGG tctataagattctagtgacaattttctgtctttctacccgcctgaaccaggTCTGTTAAGCTACCTCTTAAAGATGCTACTTTTCTGAATGAGCCTGACATGCTCTTTCCTACTACTCTTCCAAAAGACCTAATTTATGGTATAGTAATTTATGGT---GTATTGCCTCTATCAGCTATTGCGGGGCTGGTTGGGGAAGAGGGTGAGCCCTTCAGGgtaagtataaattgtagctaacaccttgaatatgcgtttttggaactacg Alignment from CESAR gTCTGTCAAGCTACCCCTAGAAGACGCGACCTTCCTAAACGAGCCCGACATGCTTTTCCCCACCACTCTGCCAAAGGATCTCATTTATGGA------------CCCGTATTGCCACTGTCGGCCATTGCCGGGCTGGTAGGCGAAGAGGCAGAGACTTTCAGG tctataagattctagtgacaattttctgtctttctacccgcctgaaccaggTCTGTTAAGCTACCTCTTAAAGATGCTACTTTTCTGAATGAGCCTGACATGCTCTTTCCTACTACTCTTCCAAAAGACCTAATTTATGGTATAGTAATTTATGGTGTATTGCCTCTATCAGCTATTGCGGGGCTGGTTGGGGAAGAGGGTGAGCCCTTCAGGgtaagtataaattgtagctaacaccttgaatatgcgtttttggaactacg Alignment from Spaln_aa2Genome GTCTGTCAAGCTACCCCTAGAAGACGCGACCTTCCTAAACGAGCCCGACATGCTTTTCCCCACCACTCTGCCAAAGGATCTCATTTATGGACCC------------GTATTGCCACTGTCGGCCATTGCCGGGCTGGTAGGCGAAGAGGCAGAGACTTTCAGG tctataagattctagtgacaattttctgtctttctacccgcctgaaccagGTCTGTTAAGCTACCTCTTAAAGATGCTACTTTTCTGAATGAGCCTGACATGCTCTTTCCTACTACTCTTCCAAAAGACCTAATTTATGGTATAGTAATTTATGGTGTATTGCCTCTATCAGCTATTGCGGGGCTGGTTGGGGAAGAGGGTGAGCCCTTCAGGgtaagtataaattgtagctaacaccttgaatatgcgtttttggaactacg Alignment from Spaln_nt2Genome GTCTGTCAAGCTACCCCTAGAAGACGCGACCTTCCTAAACGAGCCCGACATGCTTTTCCCCACCACTCTGCCAAAGGATCTCATTTATGGACCCGTA------------TTGCCACTGTCGGCCATTGCCGGGCTGGTAGGCGAAGAGGCAGAGACTTTCAGG tctataagattctagtgacaattttctgtctttctacccgcctgaaccagGTCTGTTAAGCTACCTCTTAAAGATGCTACTTTTCTGAATGAGCCTGACATGCTCTTTCCTACTACTCTTCCAAAAGACCTAATTTATGGTATAGTAATTTATGGTGTATTGCCTCTATCAGCTATTGCGGGGCTGGTTGGGGAAGAGGGTGAGCCCTTCAGGgtaagtataaattgtagctaacaccttgaatatgcgtttttggaactacg Alignment from Pairagon GTCTGTCAAGCTACCCCTAGAAGACGCGACCTTCCTAAACGAGCCCGACATGCTTTTCCCCACCACTCTGCCAAAGGATCTCATTTATGG------------ACCCGTATTGCCACTGTCGGCCATTGCCGGGCTGGTAGGCGAAGAGGCAGAGACTTTCAGG tctataagattctagtgacaattttctgtctttctacccgcctgaaccagGTCTGTTAAGCTACCTCTTAAAGATGCTACTTTTCTGAATGAGCCTGACATGCTCTTTCCTACTACTCTTCCAAAAGACCTAATTTATGGTATAGTAATTTATGGTGTATTGCCTCTATCAGCTATTGCGGGGCTGGTTGGGGAAGAGGGTGAGCCCTTCAGGgtaagtataaattgtagctaacaccttgaatatgcgtttttggaactacg Alignment from Exonerate_protein2genome GTCTGTCAAGCTACCCCTAGAAGACGCGACCTTCCTAAACGAGCCCGACATGCTTTTCCCCACCACTCTGCCAAAGGATCTCATTTATGGA------------CCCGTATTGCCACTGTCGGCCATTGCCGGGCTGGTAGGCGAAGAGGCAGAGACTTTCAGG tctataagattctagtgacaattttctgtctttctacccgcctgaaccagGTCTGTTAAGCTACCTCTTAAAGATGCTACTTTTCTGAATGAGCCTGACATGCTCTTTCCTACTACTCTTCCAAAAGACCTAATTTATGGTATAGTAATTTATGGTGTATTGCCTCTATCAGCTATTGCGGGGCTGGTTGGGGAAGAGGGTGAGCCCTTCAGGgtaagtataaattgtagctaacaccttgaatatgcgtttttggaactacg Alignment from Exonerate_coding2genome tctataagattctagtgacaattttctgtctttctacccgcctgaaccaggtctgttaagctacctcttaaagatgctacttttctgaatgagcctgacatgctctttcctactactcttccaaaagacctaatttatggtatagtaatttatggtgtattgcctctatcagctattgcggggctggttggggaagagggtgagcccttcagggtaagtataaattgtagctaacaccttgaatatgcgtttttggaactacg Alignment from GeneWise GTCTGTCAAGCTACCCCTAGAAGACGCGACCTTCCTAAACGAGCCCGACATGCTTTTCCCCACCACTCTGCCAAAGGATCTCATTTATGGA------------CCCGTATTGCCACTGTCGGCCATTGCCGGGCTGGTAGGCGAAGAGGCAGAGACTTTCAGG tctataagattctagtgacaattttctgtctttctacccgcctgaaccagGTCTGTTAAGCTACCTCTTAAAGATGCTACTTTTCTGAATGAGCCTGACATGCTCTTTCCTACTACTCTTCCAAAAGACCTAATTTATGGTATAGTAATTTATGGTGTATTGCCTCTATCAGCTATTGCGGGGCTGGTTGGGGAAGAGGGTGAGCCCTTCAGGgtaagtataaattgtagctaacaccttgaatatgcgtttttggaactacg #### Wdr96_ID10369_2 --> 1 - 1 Original Alignment aTGGGTGCAAGGATTCCCTAGTCAGAACGTCCACTTTGTCAATGACCAGACCATCTGCTACCCTTCTGGGAACTTTGTAATATTCATTAACCTGGAAACCAAGAAGAAGACTGTACTCCAGTGTATTAATGGGATTGTGGGCGTCATGGCAACTAATGTGCCCAGTGAAGTCGTGGCTTTC---TCTGACCGAAGATTTAAACCTGTTATCTACATATACAGCTTCCCATCGCTGACCAGAAAAAACAAGTTAAAAg agttcaggatatatcctgggctttggaatggtcttgttctttccatttagaTGGGTACAGGGCTTCCCTGGCCAGAATGTTCGTTTTGTCAATGACCATACGATTTGCTACCCTTCTGGGAACTTTGTAATATTCATTAACCTGGAAACCCAGAAGAAGACAGTATTACAATGTATTAATGGCCTAGTAGGAGTCATGGCCACTAATGTGCCCAGTAAAGTTGTGGCATTTTCCTCTGACCGAAGATTCAACCCTGTTATCTATAAGTACAGCTTTCCATCACTGACACGAAAAAACAAACTAAAAggtgagcggggtgtcctgctaatctcataataatcaaaataaggcaaagca Alignment from CESAR aTGGGTGCAAGGATTCCCTAGTCAGAACGTCCACTTTGTCAATGACCAGACCATCTGCTACCCTTCTGGGAACTTTGTAATATTCATTAACCTGGAAACCAAGAAGAAGACTGTACTCCAGTGTATTAATGGGATTGTGGGCGTCATGGCAACTAATGTGCCCAGTGAAGTCGTGGCTTTC---TCTGACCGAAGATTTAAACCTGTTATCTACATATACAGCTTCCCATCGCTGACCAGAAAAAACAAGTTAAAAg agttcaggatatatcctgggctttggaatggtcttgttctttccatttagaTGGGTACAGGGCTTCCCTGGCCAGAATGTTCGTTTTGTCAATGACCATACGATTTGCTACCCTTCTGGGAACTTTGTAATATTCATTAACCTGGAAACCCAGAAGAAGACAGTATTACAATGTATTAATGGCCTAGTAGGAGTCATGGCCACTAATGTGCCCAGTAAAGTTGTGGCATTTTCCTCTGACCGAAGATTCAACCCTGTTATCTATAAGTACAGCTTTCCATCACTGACACGAAAAAACAAACTAAAAggtgagcggggtgtcctgctaatctcataataatcaaaataaggcaaagca Alignment from Spaln_aa2Genome ATGGGTGCAAGGATTCCCTAGTCAGAACGTCCACTTTGTCAATGACCAGACCATCTGCTACCCTTCTGGGAACTTTGTAATATTCATTAACCTGGAAACCAAGAAGAAGACTGTACTCCAGTGTATTAATGGGATTGTGGGCGTCATGGCAACTAATGTGCCCAGTGAAGTCGTGGCTTTC---TCTGACCGAAGATTTAAACCTGTTATCTACATATACAGCTTCCCATCGCTGACCAGAAAAAACAAGTTAAAAG agttcaggatatatcctgggctttggaatggtcttgttctttccatttagATGGGTACAGGGCTTCCCTGGCCAGAATGTTCGTTTTGTCAATGACCATACGATTTGCTACCCTTCTGGGAACTTTGTAATATTCATTAACCTGGAAACCCAGAAGAAGACAGTATTACAATGTATTAATGGCCTAGTAGGAGTCATGGCCACTAATGTGCCCAGTAAAGTTGTGGCATTTTCCTCTGACCGAAGATTCAACCCTGTTATCTATAAGTACAGCTTTCCATCACTGACACGAAAAAACAAACTAAAAGgtgagcggggtgtcctgctaatctcataataatcaaaataaggcaaagca Alignment from Spaln_nt2Genome ATGGGTGCAAGGATTCCCTAGTCAGAACGTCCACTTTGTCAATGACCAGACCATCTGCTACCCTTCTGGGAACTTTGTAATATTCATTAACCTGGAAACCAAGAAGAAGACTGTACTCCAGTGTATTAATGGGATTGTGGGCGTCATGGCAACTAATGTGCCCAGTGAAGTCGTGGC---TTTCTCTGACCGAAGATTTAAACCTGTTATCTACATATACAGCTTCCCATCGCTGACCAGAAAAAACAAGTTAAAAG agttcaggatatatcctgggctttggaatggtcttgttctttccatttagATGGGTACAGGGCTTCCCTGGCCAGAATGTTCGTTTTGTCAATGACCATACGATTTGCTACCCTTCTGGGAACTTTGTAATATTCATTAACCTGGAAACCCAGAAGAAGACAGTATTACAATGTATTAATGGCCTAGTAGGAGTCATGGCCACTAATGTGCCCAGTAAAGTTGTGGCATTTTCCTCTGACCGAAGATTCAACCCTGTTATCTATAAGTACAGCTTTCCATCACTGACACGAAAAAACAAACTAAAAGgtgagcggggtgtcctgctaatctcataataatcaaaataaggcaaagca Alignment from Pairagon ATGGGTGCAAGGATTCCCTAGTCAGAACGTCCACTTTGTCAATGACCAGACCATCTGCTACCCTTCTGGGAACTTTGTAATATTCATTAACCTGGAAACCAAGAAGAAGACTGTACTCCAGTGTATTAATGGGATTGTGGGCGTCATGGCAACTAATGTGCCCAGTGAAGTCGTGGC---TTTCTCTGACCGAAGATTTAAACCTGTTATCTACATATACAGCTTCCCATCGCTGACCAGAAAAAACAAGTTAAAAG agttcaggatatatcctgggctttggaatggtcttgttctttccatttagATGGGTACAGGGCTTCCCTGGCCAGAATGTTCGTTTTGTCAATGACCATACGATTTGCTACCCTTCTGGGAACTTTGTAATATTCATTAACCTGGAAACCCAGAAGAAGACAGTATTACAATGTATTAATGGCCTAGTAGGAGTCATGGCCACTAATGTGCCCAGTAAAGTTGTGGCATTTTCCTCTGACCGAAGATTCAACCCTGTTATCTATAAGTACAGCTTTCCATCACTGACACGAAAAAACAAACTAAAAGgtgagcggggtgtcctgctaatctcataataatcaaaataaggcaaagca Alignment from Exonerate_protein2genome ATGGGTGCAAGGATTCCCTAGTCAGAACGTCCACTTTGTCAATGACCAGACCATCTGCTACCCTTCTGGGAACTTTGTAATATTCATTAACCTGGAAACCAAGAAGAAGACTGTACTCCAGTGTATTAATGGGATTGTGGGCGTCATGGCAACTAATGTGCCCAGTGAAGTCGTGGCTTTC---TCTGACCGAAGATTTAAACCTGTTATCTACATATACAGCTTCCCATCGCTGACCAGAAAAAACAAGTTAAAAG agttcaggatatatcctgggctttggaatggtcttgttctttccatttagATGGGTACAGGGCTTCCCTGGCCAGAATGTTCGTTTTGTCAATGACCATACGATTTGCTACCCTTCTGGGAACTTTGTAATATTCATTAACCTGGAAACCCAGAAGAAGACAGTATTACAATGTATTAATGGCCTAGTAGGAGTCATGGCCACTAATGTGCCCAGTAAAGTTGTGGCATTTTCCTCTGACCGAAGATTCAACCCTGTTATCTATAAGTACAGCTTTCCATCACTGACACGAAAAAACAAACTAAAAGgtgagcggggtgtcctgctaatctcataataatcaaaataaggcaaagca Alignment from Exonerate_coding2genome agttcaggatatatcctgggctttggaatggtcttgttctttccatttagatgggtacagggcttccctggccagaatgttcgttttgtcaatgaccatacgatttgctacccttctgggaactttgtaatattcattaacctggaaacccagaagaagacagtattacaatgtattaatggcctagtaggagtcatggccactaatgtgcccagtaaagttgtggcattttcctctgaccgaagattcaaccctgttatctataagtacagctttccatcactgacacgaaaaaacaaactaaaaggtgagcggggtgtcctgctaatctcataataatcaaaataaggcaaagca Alignment from GeneWise ATGGGTGCAAGGATTCCCTAGTCAGAACGTCCACTTTGTCAATGACCAGACCATCTGCTACCCTTCTGGGAACTTTGTAATATTCATTAACCTGGAAACCAAGAAGAAGACTGTACTCCAGTGTATTAATGGGATTGTGGGCGTCATGGCAACTAATGTGCCCAGTGAAGTCGTGGCTTTC---TCTGACCGAAGATTTAAACCTGTTATCTACATATACAGCTTCCCATCGCTGACCAGAAAAAACAAGTTAAAAG agttcaggatatatcctgggctttggaatggtcttgttctttccatttagATGGGTACAGGGCTTCCCTGGCCAGAATGTTCGTTTTGTCAATGACCATACGATTTGCTACCCTTCTGGGAACTTTGTAATATTCATTAACCTGGAAACCCAGAAGAAGACAGTATTACAATGTATTAATGGCCTAGTAGGAGTCATGGCCACTAATGTGCCCAGTAAAGTTGTGGCATTTTCCTCTGACCGAAGATTCAACCCTGTTATCTATAAGTACAGCTTTCCATCACTGACACGAAAAAACAAACTAAAAGgtgagcggggtgtcctgctaatctcataataatcaaaataaggcaaagca #### Wnt8b_ID9019_2 --> 1 - 0 Original Alignment gTCAGTGAACAATTTTCTGATGACCGGTCCAAAG taaagaatgtattgtgcatggttacagttataacttttggacccttgtaggTCAGTGAATAATTTTCTCATGACAGGTCCAAAGgtaagtggtgaaaccacctaaccatggtctggataagtctgctgtcatta Alignment from CESAR gTCAGTGAACAATTTTCTGATGACCGGTCCAAAG taaagaatgtattgtgcatggttacagttataacttttggacccttgtaggTCAGTGAATAATTTTCTCATGACAGGTCCAAAGgtaagtggtgaaaccacctaaccatggtctggataagtctgctgtcatta Alignment from Spaln_aa2Genome GTCAGTGAACAATTTTCTGATGACCGGTCCAAAG taaagaatgtattgtgcatggttacagttataacttttggacccttgtagGTCAGTGAATAATTTTCTCATGACAGGTCCAAAGgtaagtggtgaaaccacctaaccatggtctggataagtctgctgtcatta Alignment from Spaln_nt2Genome GTCAGTGAACAATTTTCTGATGACCGGTCCAAAG taaagaatgtattgtgcatggttacagttataacttttggacccttgtagGTCAGTGAATAATTTTCTCATGACAGGTCCAAAGgtaagtggtgaaaccacctaaccatggtctggataagtctgctgtcatta Alignment from Pairagon GTCAGTGAACAATTTTCTGATGACCGGTCCAAAG taaagaatgtattgtgcatggttacagttataacttttggacccttgtagGTCAGTGAATAATTTTCTCATGACAGGTCCAAAGgtaagtggtgaaaccacctaaccatggtctggataagtctgctgtcatta Alignment from Exonerate_protein2genome GTCAGTGAACAATTTTCTGATGACCGGTCCAAAG taaagaatgtattgtgcatggttacagttataacttttggacccttgtagGTCAGTGAATAATTTTCTCATGACAGGTCCAAAGgtaagtggtgaaaccacctaaccatggtctggataagtctgctgtcatta Alignment from Exonerate_coding2genome taaagaatgtattgtgcatggttacagttataacttttggacccttgtaggtcagtgaataattttctcatgacaggtccaaaggtaagtggtgaaaccacctaaccatggtctggataagtctgctgtcatta Alignment from GeneWise GTCAGTGAACAATTTTCTGATGACCGGTCCAAAG taaagaatgtattgtgcatggttacagttataacttttggacccttgtagGTCAGTGAATAATTTTCTCATGACAGGTCCAAAGgtaagtggtgaaaccacctaaccatggtctggataagtctgctgtcatta #### Xpnpep1_ID11137_18 --> 0 - 0 Original Alignment TATAATTTCAACAACCGAGGAAGCCTGACCTTTGAACCTCTAACTTTGGTTCCCATCCAGACCAAAATGATAGATGTGAATGCTCTTACAGATAAAGAG ctatgaagcagggattattacaacatgctctattccctctctttttctagTATAACTTCAACAACCGAGGAAGCCTTACATTTGAGCCCCTAACTCTGGTCCCCATCCAGACCAAGATGATAGATGTGAATGCACTCACAGGTAAAGAAgtaggatagcaaaagtgaggggaaagttctgatgggctctttcattacct Alignment from CESAR TATAATTTCAACAACCGAGGAAGCCTGACCTTTGAACCTCTAACTTTGGTTCCCATCCAGACCAAAATGATAGATGTGAATGCTCTTACAGATAAAGAG ctatgaagcagggattattacaacatgctctattccctctctttttctagTATAACTTCAACAACCGAGGAAGCCTTACATTTGAGCCCCTAACTCTGGTCCCCATCCAGACCAAGATGATAGATGTGAATGCACTCACAGGTAAAGAAgtaggatagcaaaagtgaggggaaagttctgatgggctctttcattacct Alignment from Spaln_aa2Genome TATAATTTCAACAACCGAGGAAGCCTGACCTTTGAACCTCTAACTTTGGTTCCCATCCAGACCAAAATGATAGATGTGAATGCTCTTACAGATAAAGAG ctatgaagcagggattattacaacatgctctattccctctctttttctagTATAACTTCAACAACCGAGGAAGCCTTACATTTGAGCCCCTAACTCTGGTCCCCATCCAGACCAAGATGATAGATGTGAATGCACTCACAGGTAAAGAAgtaggatagcaaaagtgaggggaaagttctgatgggctctttcattacct Alignment from Spaln_nt2Genome TATAATTTCAACAACCGAGGAAGCCTGACCTTTGAACCTCTAACTTTGGTTCCCATCCAGACCAAAATGATAGATGTGAATGCTCTTACAGATAAAGAG ctatgaagcagggattattacaacatgctctattccctctctttttctagTATAACTTCAACAACCGAGGAAGCCTTACATTTGAGCCCCTAACTCTGGTCCCCATCCAGACCAAGATGATAGATGTGAATGCACTCACAGGTAAAGAAgtaggatagcaaaagtgaggggaaagttctgatgggctctttcattacct Alignment from Pairagon TATAATTTCAACAACCGAGGAAGCCTGACCTTTGAACCTCTAACTTTGGTTCCCATCCAGACCAAAATGATAGATGTGAATGCTCTTACAGATAAAGAG ctatgaagcagggattattacaacatgctctattccctctctttttctagTATAACTTCAACAACCGAGGAAGCCTTACATTTGAGCCCCTAACTCTGGTCCCCATCCAGACCAAGATGATAGATGTGAATGCACTCACAGGTAAAGAAgtaggatagcaaaagtgaggggaaagttctgatgggctctttcattacct Alignment from Exonerate_protein2genome TATAATTTCAACAACCGAGGAAGCCTGACCTTTGAACCTCTAACTTTGGTTCCCATCCAGACCAAAATGATAGATGTGAATGCTCTTACAGATAAAGAG ctatgaagcagggattattacaacatgctctattccctctctttttctagTATAACTTCAACAACCGAGGAAGCCTTACATTTGAGCCCCTAACTCTGGTCCCCATCCAGACCAAGATGATAGATGTGAATGCACTCACAGGTAAAGAAgtaggatagcaaaagtgaggggaaagttctgatgggctctttcattacct Alignment from Exonerate_coding2genome TATAATTTCAACAACCGAGGAAGCCTGACCTTTGAACCTCTAACTTTGGTTCCCATCCAGACCAAAATGATAGATGTGAATGCTCTTACAGATAAAGAG ctatgaagcagggattattacaacatgctctattccctctctttttctagTATAACTTCAACAACCGAGGAAGCCTTACATTTGAGCCCCTAACTCTGGTCCCCATCCAGACCAAGATGATAGATGTGAATGCACTCACAGGTAAAGAAgtaggatagcaaaagtgaggggaaagttctgatgggctctttcattacct Alignment from GeneWise TATAATTTCAACAACCGAGGAAGCCTGACCTTTGAACCTCTAACTTTGGTTCCCATCCAGACCAAAATGATAGATGTGAATGCTCTTACAGATAAAGAG ctatgaagcagggattattacaacatgctctattccctctctttttctagTATAACTTCAACAACCGAGGAAGCCTTACATTTGAGCCCCTAACTCTGGTCCCCATCCAGACCAAGATGATAGATGTGAATGCACTCACAGGTAAAGAAgtaggatagcaaaagtgaggggaaagttctgatgggctctttcattacct #### Xpnpep1_ID11140_15 --> 0 - 1 Original Alignment GAATGCTTCACATACGTACTGAAAGGCCACATAGCTGTGAGCGCAGCTGTTTTCCCGACGGGAACCAAAg tccattacacataccttgaccactagtgtaaaatgtccatgtgatcctagGAATGCTTCACATACGTACTGAAAGGGCATATTGCTGTGAGTGCAGCTGTGTTCCCAACAGGACCCAAAggtaagtcataatacaataaatctgatcccattcaaactgcttatgattac Alignment from CESAR GAATGCTTCACATACGTACTGAAAGGCCACATAGCTGTGAGCGCAGCTGTTTTCCCGACGGGAACCAAAg tccattacacataccttgaccactagtgtaaaatgtccatgtgatcctagGAATGCTTCACATACGTACTGAAAGGGCATATTGCTGTGAGTGCAGCTGTGTTCCCAACAGGACCCAAAggtaagtcataatacaataaatctgatcccattcaaactgcttatgattac Alignment from Spaln_aa2Genome GAATGCTTCACATACGTACTGAAAGGCCACATAGCTGTGAGCGCAGCTGTTTTCCCGACGGGAACCAAAG tccattacacataccttgaccactagtgtaaaatgtccatgtgatcctagGAATGCTTCACATACGTACTGAAAGGGCATATTGCTGTGAGTGCAGCTGTGTTCCCAACAGGACCCAAAGgtaagtcataatacaataaatctgatcccattcaaactgcttatgattac Alignment from Spaln_nt2Genome GAATGCTTCACATACGTACTGAAAGGCCACATAGCTGTGAGCGCAGCTGTTTTCCCGACGGGAACCAAAG tccattacacataccttgaccactagtgtaaaatgtccatgtgatcctagGAATGCTTCACATACGTACTGAAAGGGCATATTGCTGTGAGTGCAGCTGTGTTCCCAACAGGACCCAAAGgtaagtcataatacaataaatctgatcccattcaaactgcttatgattac Alignment from Pairagon GAATGCTTCACATACGTACTGAAAGGCCACATAGCTGTGAGCGCAGCTGTTTTCCCGACGGGAACCAAAG tccattacacataccttgaccactagtgtaaaatgtccatgtgatcctagGAATGCTTCACATACGTACTGAAAGGGCATATTGCTGTGAGTGCAGCTGTGTTCCCAACAGGACCCAAAGgtaagtcataatacaataaatctgatcccattcaaactgcttatgattac Alignment from Exonerate_protein2genome GAATGCTTCACATACGTACTGAAAGGCCACATAGCTGTGAGCGCAGCTGTTTTCCCGACGGGAACCAAAG tccattacacataccttgaccactagtgtaaaatgtccatgtgatcctagGAATGCTTCACATACGTACTGAAAGGGCATATTGCTGTGAGTGCAGCTGTGTTCCCAACAGGACCCAAAGgtaagtcataatacaataaatctgatcccattcaaactgcttatgattac Alignment from Exonerate_coding2genome GAATGCTTCACATACGTACTGAAAGGCCACATAGCTGTGAGCGCAGCTGTTTTCCCGACGGGAACCAAAG tccattacacataccttgaccactagtgtaaaatgtccatgtgatcctagGAATGCTTCACATACGTACTGAAAGGGCATATTGCTGTGAGTGCAGCTGTGTTCCCAACAGGACCCAAAGgtaagtcataatacaataaatctgatcccattcaaactgcttatgattac Alignment from GeneWise GAATGCTTCACATACGTACTGAAAGGCCACATAGCTGTGAGCGCAGCTGTTTTCCCGACGGGAACCAAAG tccattacacataccttgaccactagtgtaaaatgtccatgtgatcctagGAATGCTTCACATACGTACTGAAAGGGCATATTGCTGTGAGTGCAGCTGTGTTCCCAACAGGACCCAAAGgtaagtcataatacaataaatctgatcccattcaaactgcttatgattac #### Xpnpep1_ID11145_11 --> 0 - 2 Original Alignment GTTCCCAAAGGTGGCGTTACGGAGATCTCTGCGGCTGACAAGGCCGAGGAATTTCGAag gctgtggggattacacagcacaacccatacagagtttccttttctgacagGTTCCTAAAGGTGGTGTTACTGAGATCTCGGCGGCTGACAAGTCTGAGGAATTACGAaggtgagtctcagttctgtgttattagtcaggcttggacaggttccatgggt Alignment from CESAR GTTCCCAAAGGTGGCGTTACGGAGATCTCTGCGGCTGACAAGGCCGAGGAATTTCGAag gctgtggggattacacagcacaacccatacagagtttccttttctgacagGTTCCTAAAGGTGGTGTTACTGAGATCTCGGCGGCTGACAAGTCTGAGGAATTACGAaggtgagtctcagttctgtgttattagtcaggcttggacaggttccatgggt Alignment from Spaln_aa2Genome GTTCCCAAAGGTGGCGTTACGGAGATCTCTGCGGCTGACAAGGCCGAGGAATTTCGAAG gctgtggggattacacagcacaacccatacagagtttccttttctgacagGTTCCTAAAGGTGGTGTTACTGAGATCTCGGCGGCTGACAAGTCTGAGGAATTACGAAGgtgagtctcagttctgtgttattagtcaggcttggacaggttccatgggt Alignment from Spaln_nt2Genome GTTCCCAAAGGTGGCGTTACGGAGATCTCTGCGGCTGACAAGGCCGAGGAATTTCGAAG gctgtggggattacacagcacaacccatacagagtttccttttctgacagGTTCCTAAAGGTGGTGTTACTGAGATCTCGGCGGCTGACAAGTCTGAGGAATTACGAAGgtgagtctcagttctgtgttattagtcaggcttggacaggttccatgggt Alignment from Pairagon GTTCCCAAAGGTGGCGTTACGGAGATCTCTGCGGCTGACAAGGCCGAGGAATTTCGAAG gctgtggggattacacagcacaacccatacagagtttccttttctgacagGTTCCTAAAGGTGGTGTTACTGAGATCTCGGCGGCTGACAAGTCTGAGGAATTACGAAGgtgagtctcagttctgtgttattagtcaggcttggacaggttccatgggt Alignment from Exonerate_protein2genome GTTCCCAAAGGTGGCGTTACGGAGATCTCTGCGGCTGACAAGGCCGAGGAATTTCGAAG gctgtggggattacacagcacaacccatacagagtttccttttctgacagGTTCCTAAAGGTGGTGTTACTGAGATCTCGGCGGCTGACAAGTCTGAGGAATTACGAAGgtgagtctcagttctgtgttattagtcaggcttggacaggttccatgggt Alignment from Exonerate_coding2genome GTTCCCAAAGGTGGCGTTACGGAGATCTCTGCGGCTGACAAGGCCGAGGAATTTCGAAG gctgtggggattacacagcacaacccatacagagtttccttttctgacagGTTCCTAAAGGTGGTGTTACTGAGATCTCGGCGGCTGACAAGTCTGAGGAATTACGAAGgtgagtctcagttctgtgttattagtcaggcttggacaggttccatgggt Alignment from GeneWise GTTCCCAAAGGTGGCGTTACGGAGATCTCTGCGGCTGACAAGGCCGAGGAATTTCGAAG gctgtggggattacacagcacaacccatacagagtttccttttctgacagGTTCCTAAAGGTGGTGTTACTGAGATCTCGGCGGCTGACAAGTCTGAGGAATTACGAAGgtgagtctcagttctgtgttattagtcaggcttggacaggttccatgggt #### Yif1a_ID831_3 --> 0 - 0 Original Alignment AGGACATAGTGCACAAAGAG CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG AGGACATTGTGCACAAAGAGgtgtgttgtctcaccatctcccgtccacagCTACACCGTTTTGTGTCTGTAAATAAACTCAAATATTTCTTTGCTGTGGACACAGCCTATGTCGCTAAAAAGCTCGGACTCTTAGTCTTCCCATACACACATCAAgtaagactgtctgaagtgtaggacccttacatatgacctgcatccctctc Alignment from CESAR AGGACATAGTGCACAAAGAG CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG AGGACATTGTGCACAAAGAGgtgagctgtctcaccatctcccgtccacagCTACACCGTTTTGTGTCTGTAAATAAACTCAAATATTTCTTTGCTGTGGACACAGCCTATGTCGCTAAAAAGCTCGGACTCTTAGTCTTCCCATACACACATCAAgtaagactgtctgaagtgtaggacccttacatatgacctgcatccctctc Alignment from Spaln_aa2Genome AGGACATAGTGCACAAAGAG------------------------------CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG AGGACATTGTGCACAAAGAGGTGTGTTGTCTCACCATCTCCCGTCCACAGCTACACCGTTTTGTGTCTGTAAATAAACTCAAATATTTCTTTGCTGTGGACACAGCCTATGTCGCTAAAAAGCTCGGACTCTTAGTCTTCCCATACACACATCAAgtaagactgtctgaagtgtaggacccttacatatgacctgcatccctctc Alignment from Spaln_nt2Genome AGGACATAGTGCACAAAG------------------------------AGCTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG AGGACATTGTGCACAAAGAGGTGTGTTGTCTCACCATCTCCCGTCCACAGCTACACCGTTTTGTGTCTGTAAATAAACTCAAATATTTCTTTGCTGTGGACACAGCCTATGTCGCTAAAAAGCTCGGACTCTTAGTCTTCCCATACACACATCAAgtaagactgtctgaagtgtaggacccttacatatgacctgcatccctctc Alignment from Pairagon AGGACATAGTGCACAAAGAG CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG AGGACATTGTGCACAAAGAGgtgtgttgtctcaccatctcccgtccacagCTACACCGTTTTGTGTCTGTAAATAAACTCAAATATTTCTTTGCTGTGGACACAGCCTATGTCGCTAAAAAGCTCGGACTCTTAGTCTTCCCATACACACATCAAgtaagactgtctgaagtgtaggacccttacatatgacctgcatccctctc Alignment from Exonerate_protein2genome AGGACATAGTGCACAAAGAG CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG AGGACATTGTGCACAAAGAGgtgtgttgtctcaccatctcccgtccacagCTACACCGTTTTGTGTCTGTAAATAAACTCAAATATTTCTTTGCTGTGGACACAGCCTATGTCGCTAAAAAGCTCGGACTCTTAGTCTTCCCATACACACATCAAgtaagactgtctgaagtgtaggacccttacatatgacctgcatccctctc Alignment from Exonerate_coding2genome AGGACATAGTGCACAAAGAG CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG AGGACATTGTGCACAAAGAGgtgtgttgtctcaccatctcccgtccacagCTACACCGTTTTGTGTCTGTAAATAAACTCAAATATTTCTTTGCTGTGGACACAGCCTATGTCGCTAAAAAGCTCGGACTCTTAGTCTTCCCATACACACATCAAgtaagactgtctgaagtgtaggacccttacatatgacctgcatccctctc Alignment from GeneWise AGGACATAGTGCACAAAGAG------------------------------CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG AGGACATTGTGCACAAAGAGGTGTGTTGTCTCACCATCTCCCGTCCACAGCTACACCGTTTTGTGTCTGTAAATAAACTCAAATATTTCTTTGCTGTGGACACAGCCTATGTCGCTAAAAAGCTCGGACTCTTAGTCTTCCCATACACACATCAAgtaagactgtctgaagtgtaggacccttacatatgacctgcatccctctc #### Yif1a_ID833_5 --> 2 - 2 Original Alignment ccATGGCCTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAag gtgggaggtcctctggtggggagacacatcctttcgccatctcttcccagccATGGCTTTTGTCACGGATGTGCTAAGGGCTGGGATGGCATTTGGCATTCAGCAGaggtaatgatccagcagctcttacctgttattttcttaagccaggttttcta Alignment from CESAR ccATGGCCTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAag gtgggaggtcctctggtggggagacacatcctttcgccatctcttcccagccATGGCTTTTGTCACGGATGTGCTAAGGGCTGGGATGGCATTTGGCATTCAGCAGaggtaatgatccagcagctcttacctgttattttcttaagccaggttttcta Alignment from Spaln_aa2Genome CCATGGCCTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAG gtgggaggtcctctggtggggagacacatcctttcgccatctcttcccagCCATGGCTTTTGTCACGGATGTGCTAAGGGCTGGGATGGCATTTGGCATTCAGCAGAGgtaatgatccagcagctcttacctgttattttcttaagccaggttttcta Alignment from Spaln_nt2Genome CCATGGCCTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAG gtgggaggtcctctggtggggagacacatcctttcgccatctcttcccagCCATGGCTTTTGTCACGGATGTGCTAAGGGCTGGGATGGCATTTGGCATTCAGCAGAGgtaatgatccagcagctcttacctgttattttcttaagccaggttttcta Alignment from Pairagon CCATGGCCTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAG gtgggaggtcctctggtggggagacacatcctttcgccatctcttcccagCCATGGCTTTTGTCACGGATGTGCTAAGGGCTGGGATGGCATTTGGCATTCAGCAGAGgtaatgatccagcagctcttacctgttattttcttaagccaggttttcta Alignment from Exonerate_protein2genome CCATGGCCTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAG gtgggaggtcctctggtggggagacacatcctttcgccatctcttcccagCCATGGCTTTTGTCACGGATGTGCTAAGGGCTGGGATGGCATTTGGCATTCAGCAGAGgtaatgatccagcagctcttacctgttattttcttaagccaggttttcta Alignment from Exonerate_coding2genome CCATGGCCTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAG gtgggaggtcctctggtggggagacacatcctttcgccatctcttcccagCCATGGCTTTTGTCACGGATGTGCTAAGGGCTGGGATGGCATTTGGCATTCAGCAGAGgtaatgatccagcagctcttacctgttattttcttaagccaggttttcta Alignment from GeneWise CCATGGCCTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAG gtgggaggtcctctggtggggagacacatcctttcgccatctcttcccagCCATGGCTTTTGTCACGGATGTGCTAAGGGCTGGGATGGCATTTGGCATTCAGCAGAGgtaatgatccagcagctcttacctgttattttcttaagccaggttttcta #### Zdhhc16_ID8346_3 --> 0 - 2 Original Alignment GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATag ggaatacattggaaaaatgcatcctccgttatttaaattgctttttgcagGGCAGGAATGAAATTAGCACAGTATCAATCTGCAAGGAATGCATTTATCCCAAGCCAGCTTGTACACACCACTGTAGCATCTCTAAGaggtacgactgattctgtccttcactttacttaaagcacattgagttttgag Alignment from CESAR GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATag ggaatacattggaaaaatgcatcctccgttatttaaattgctttttgcagGGCAGGAATGAAATTAGCACAGTATCAATCTGCAAGGAATGCATTTATCCCAAGCCAGCTTGTACACACCACTGTAGCATCTCTAAGaggtacgactgattctgtccttcactttacttaaagcacattgagttttgag Alignment from Spaln_aa2Genome GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG ggaatacattggaaaaatgcatcctccgttatttaaattgctttttgcagGGCAGGAATGAAATTAGCACAGTATCAATCTGCAAGGAATGCATTTATCCCAAGCCAGCTTGTACACACCACTGTAGCATCTCTAAGAGgtacgactgattctgtccttcactttacttaaagcacattgagttttgag Alignment from Spaln_nt2Genome GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG ggaatacattggaaaaatgcatcctccgttatttaaattgctttttgcagGGCAGGAATGAAATTAGCACAGTATCAATCTGCAAGGAATGCATTTATCCCAAGCCAGCTTGTACACACCACTGTAGCATCTCTAAGAGgtacgactgattctgtccttcactttacttaaagcacattgagttttgag Alignment from Pairagon GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG ggaatacattggaaaaatgcatcctccgttatttaaattgctttttgcagGGCAGGAATGAAATTAGCACAGTATCAATCTGCAAGGAATGCATTTATCCCAAGCCAGCTTGTACACACCACTGTAGCATCTCTAAGAGgtacgactgattctgtccttcactttacttaaagcacattgagttttgag Alignment from Exonerate_protein2genome GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG ggaatacattggaaaaatgcatcctccgttatttaaattgctttttgcagGGCAGGAATGAAATTAGCACAGTATCAATCTGCAAGGAATGCATTTATCCCAAGCCAGCTTGTACACACCACTGTAGCATCTCTAAGAGgtacgactgattctgtccttcactttacttaaagcacattgagttttgag Alignment from Exonerate_coding2genome GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG ggaatacattggaaaaatgcatcctccgttatttaaattgctttttgcagGGCAGGAATGAAATTAGCACAGTATCAATCTGCAAGGAATGCATTTATCCCAAGCCAGCTTGTACACACCACTGTAGCATCTCTAAGAGgtacgactgattctgtccttcactttacttaaagcacattgagttttgag Alignment from GeneWise GGCAGGAATGACATTGCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG ggaatacattggaaaaatgcatcctccgttatttaaattgctttttgcagGGCAGGAATGAAATTAGCACAGTATCAATCTGCAAGGAATGCATTTATCCCAAGCCAGCTTGTACACACCACTGTAGCATCTCTAAGAGgtacgactgattctgtccttcactttacttaaagcacattgagttttgag #### Zdhhc16_ID8347_4 --> 1 - 1 Original Alignment gTGTGTGCTGAAGATGGATCATCACTGCc gatcataatccaaccctaagaatctcaatgattgcttgtgtcctctgcaggTGTGTATTGAAGATGGATCACCACTGTcgtatgtatcttgtaattgtatcaccattcattactgtcccgagactctag Alignment from CESAR gTGTGTGCTGAAGATGGATCATCACTGCc gatcataatccaaccctaagaatctcaatgattgcttgtgtcctctgcaggTGTGTATTGAAGATGGATCACCACTGTcgtatgtatcttgtaattgtatcaccattcattactgtcccgagactctag Alignment from Spaln_aa2Genome GTGTGTGCTGAAGATGGATCATCACTGCC gatcataatccaaccctaagaatctcaatgattgcttgtgtcctctgcagGTGTGTATTGAAGATGGATCACCACTGTCgtatgtatcttgtaattgtatcaccattcattactgtcccgagactctag Alignment from Spaln_nt2Genome GTGTGTGCTGAAGATGGATCATCACTGCC gatcataatccaaccctaagaatctcaatgattgcttgtgtcctctgcagGTGTGTATTGAAGATGGATCACCACTGTCgtatgtatcttgtaattgtatcaccattcattactgtcccgagactctag Alignment from Pairagon GTGTGTGCTGAAGATGGATCATCACTGCC gatcataatccaaccctaagaatctcaatgattgcttgtgtcctctgcagGTGTGTATTGAAGATGGATCACCACTGTCgtatgtatcttgtaattgtatcaccattcattactgtcccgagactctag Alignment from Exonerate_protein2genome GTGTGTGCTGAAGATGGATCATCACTGCC gatcataatccaaccctaagaatctcaatgattgcttgtgtcctctgcagGTGTGTATTGAAGATGGATCACCACTGTCgtatgtatcttgtaattgtatcaccattcattactgtcccgagactctag Alignment from Exonerate_coding2genome gatcataatccaaccctaagaatctcaatgattgcttgtgtcctctgcaggtgtgtattgaagatggatcaccactgtcgtatgtatcttgtaattgtatcaccattcattactgtcccgagactctag Alignment from GeneWise GTGTGTGCTGAAGATGGATCATCACTGCC gatcataatccaaccctaagaatctcaatgattgcttgtgtcctctgcagGTGTGTATTGAAGATGGATCACCACTGTCgtatgtatcttgtaattgtatcaccattcattactgtcccgagactctag #### Zdhhc16_ID8349_6 --> 0 - 2 Original Alignment ACGTACCACCAGACTCCACCACCTACCTTCTCCTTTCGAGAAAGGATAACTCACAAGAGTCTTGTCTACCTCTGGTTCCTGTGCag taagaaaaggtctgtagctcatttgatagggttttcttttgtcttggcagACGTACCACCAGACTCCACCACCTACCTTCCCCTTTCGGGAAAGGATAACTCACAAGAGTCTTGTCTACCTCTGGTTCCTGTGCaggtgcggctactttctaggtgcctattggtgcccctctcctactgagtaat Alignment from CESAR ACGTACCACCAGACTCCACCACCTACCTTCTCCTTTCGAGAAAGGATAACTCACAAGAGTCTTGTCTACCTCTGGTTCCTGTGCag taagaaaaggtctgtagctcatttgatagggttttcttttgtcttggcagACGTACCACCAGACTCCACCACCTACCTTCCCCTTTCGGGAAAGGATAACTCACAAGAGTCTTGTCTACCTCTGGTTCCTGTGCaggtgcggctactttctaggtgcctattggtgcccctctcctactgagtaat Alignment from Spaln_aa2Genome ACGTACCACCAGACTCCACCACCTACCTTCTCCTTTCGAGAAAGGATAACTCACAAGAGTCTTGTCTACCTCTGGTTCCTGTGCAG taagaaaaggtctgtagctcatttgatagggttttcttttgtcttggcagACGTACCACCAGACTCCACCACCTACCTTCCCCTTTCGGGAAAGGATAACTCACAAGAGTCTTGTCTACCTCTGGTTCCTGTGCAGgtgcggctactttctaggtgcctattggtgcccctctcctactgagtaat Alignment from Spaln_nt2Genome ACGTACCACCAGACTCCACCACCTACCTTCTCCTTTCGAGAAAGGATAACTCACAAGAGTCTTGTCTACCTCTGGTTCCTGTGCAG taagaaaaggtctgtagctcatttgatagggttttcttttgtcttggcagACGTACCACCAGACTCCACCACCTACCTTCCCCTTTCGGGAAAGGATAACTCACAAGAGTCTTGTCTACCTCTGGTTCCTGTGCAGgtgcggctactttctaggtgcctattggtgcccctctcctactgagtaat Alignment from Pairagon ACGTACCACCAGACTCCACCACCTACCTTCTCCTTTCGAGAAAGGATAACTCACAAGAGTCTTGTCTACCTCTGGTTCCTGTGCAG taagaaaaggtctgtagctcatttgatagggttttcttttgtcttggcagACGTACCACCAGACTCCACCACCTACCTTCCCCTTTCGGGAAAGGATAACTCACAAGAGTCTTGTCTACCTCTGGTTCCTGTGCAGgtgcggctactttctaggtgcctattggtgcccctctcctactgagtaat Alignment from Exonerate_protein2genome ACGTACCACCAGACTCCACCACCTACCTTCTCCTTTCGAGAAAGGATAACTCACAAGAGTCTTGTCTACCTCTGGTTCCTGTGCAG taagaaaaggtctgtagctcatttgatagggttttcttttgtcttggcagACGTACCACCAGACTCCACCACCTACCTTCCCCTTTCGGGAAAGGATAACTCACAAGAGTCTTGTCTACCTCTGGTTCCTGTGCAGgtgcggctactttctaggtgcctattggtgcccctctcctactgagtaat Alignment from Exonerate_coding2genome ACGTACCACCAGACTCCACCACCTACCTTCTCCTTTCGAGAAAGGATAACTCACAAGAGTCTTGTCTACCTCTGGTTCCTGTGCAG taagaaaaggtctgtagctcatttgatagggttttcttttgtcttggcagACGTACCACCAGACTCCACCACCTACCTTCCCCTTTCGGGAAAGGATAACTCACAAGAGTCTTGTCTACCTCTGGTTCCTGTGCAGgtgcggctactttctaggtgcctattggtgcccctctcctactgagtaat Alignment from GeneWise ACGTACCACCAGACTCCACCACCTACCTTCTCCTTTCGAGAAAGGATAACTCACAAGAGTCTTGTCTACCTCTGGTTCCTGTGCAG taagaaaaggtctgtagctcatttgatagggttttcttttgtcttggcagACGTACCACCAGACTCCACCACCTACCTTCCCCTTTCGGGAAAGGATAACTCACAAGAGTCTTGTCTACCTCTGGTTCCTGTGCAGgtgcggctactttctaggtgcctattggtgcccctctcctactgagtaat #### Zdhhc6_ID11623_6 --> 0 - 0 Original Alignment GCTAAAGATCGCATTCAGTATTACCAACTGGATGAAGTCTTCATTTTTCCTTATGATATGGGAAGTAAGTGGAAGAACTTTAAACAGGTGTTTACATGGTCGGGAGTTCCTGAAGGAGATGGACTTGAGTGGCCAATACGAGAGGGCTGTGACCAGTACAGCCTCACA agctactgctgagggaagtgacttgcaaccccccctcgtctgcctctcagGCTAAGGATCACATTCAGTATTATCAACTGGATGAAGTATCCATTTTCCCTTATGATATGGGCAGTAAGTGGAAGAACTTTAAACAAGTGTTTACATGGTCAGGAGTTCCTGAAGGAGATGGACTAGAGTGGCCAATACGAGAAGGCTGTGACCAGTACAGCCTCACGgtaattagctagtttgcttggctctagccattactgtatcaatttggccc Alignment from CESAR GCTAAAGATCGCATTCAGTATTACCAACTGGATGAAGTCTTCATTTTTCCTTATGATATGGGAAGTAAGTGGAAGAACTTTAAACAGGTGTTTACATGGTCGGGAGTTCCTGAAGGAGATGGACTTGAGTGGCCAATACGAGAGGGCTGTGACCAGTACAGCCTCACA agctactgctgagggaagtgacttgcaaccccccctcgtctgcctctcagGCTAAGGATCACATTCAGTATTATCAACTGGATGAAGTATCCATTTTCCCTTATGATATGGGCAGTAAGTGGAAGAACTTTAAACAAGTGTTTACATGGTCAGGAGTTCCTGAAGGAGATGGACTAGAGTGGCCAATACGAGAAGGCTGTGACCAGTACAGCCTCACGgtaattagctagtttgcttggctctagccattactgtatcaatttggccc Alignment from Spaln_aa2Genome GCTAAAGATCGCATTCAGTATTACCAACTGGATGAAGTCTTCATTTTTCCTTATGATATGGGAAGTAAGTGGAAGAACTTTAAACAGGTGTTTACATGGTCGGGAGTTCCTGAAGGAGATGGACTTGAGTGGCCAATACGAGAGGGCTGTGACCAGTACAGCCTCACA agctactgctgagggaagtgacttgcaaccccccctcgtctgcctctcagGCTAAGGATCACATTCAGTATTATCAACTGGATGAAGTATCCATTTTCCCTTATGATATGGGCAGTAAGTGGAAGAACTTTAAACAAGTGTTTACATGGTCAGGAGTTCCTGAAGGAGATGGACTAGAGTGGCCAATACGAGAAGGCTGTGACCAGTACAGCCTCACGgtaattagctagtttgcttggctctagccattactgtatcaatttggccc Alignment from Spaln_nt2Genome GCTAAAGATCGCATTCAGTATTACCAACTGGATGAAGTCTTCATTTTTCCTTATGATATGGGAAGTAAGTGGAAGAACTTTAAACAGGTGTTTACATGGTCGGGAGTTCCTGAAGGAGATGGACTTGAGTGGCCAATACGAGAGGGCTGTGACCAGTACAGCCTCACA agctactgctgagggaagtgacttgcaaccccccctcgtctgcctctcagGCTAAGGATCACATTCAGTATTATCAACTGGATGAAGTATCCATTTTCCCTTATGATATGGGCAGTAAGTGGAAGAACTTTAAACAAGTGTTTACATGGTCAGGAGTTCCTGAAGGAGATGGACTAGAGTGGCCAATACGAGAAGGCTGTGACCAGTACAGCCTCACGgtaattagctagtttgcttggctctagccattactgtatcaatttggccc Alignment from Pairagon GCTAAAGATCGCATTCAGTATTACCAACTGGATGAAGTCTTCATTTTTCCTTATGATATGGGAAGTAAGTGGAAGAACTTTAAACAGGTGTTTACATGGTCGGGAGTTCCTGAAGGAGATGGACTTGAGTGGCCAATACGAGAGGGCTGTGACCAGTACAGCCTCACA agctactgctgagggaagtgacttgcaaccccccctcgtctgcctctcagGCTAAGGATCACATTCAGTATTATCAACTGGATGAAGTATCCATTTTCCCTTATGATATGGGCAGTAAGTGGAAGAACTTTAAACAAGTGTTTACATGGTCAGGAGTTCCTGAAGGAGATGGACTAGAGTGGCCAATACGAGAAGGCTGTGACCAGTACAGCCTCACGgtaattagctagtttgcttggctctagccattactgtatcaatttggccc Alignment from Exonerate_protein2genome GCTAAAGATCGCATTCAGTATTACCAACTGGATGAAGTCTTCATTTTTCCTTATGATATGGGAAGTAAGTGGAAGAACTTTAAACAGGTGTTTACATGGTCGGGAGTTCCTGAAGGAGATGGACTTGAGTGGCCAATACGAGAGGGCTGTGACCAGTACAGCCTCACA agctactgctgagggaagtgacttgcaaccccccctcgtctgcctctcagGCTAAGGATCACATTCAGTATTATCAACTGGATGAAGTATCCATTTTCCCTTATGATATGGGCAGTAAGTGGAAGAACTTTAAACAAGTGTTTACATGGTCAGGAGTTCCTGAAGGAGATGGACTAGAGTGGCCAATACGAGAAGGCTGTGACCAGTACAGCCTCACGgtaattagctagtttgcttggctctagccattactgtatcaatttggccc Alignment from Exonerate_coding2genome GCTAAAGATCGCATTCAGTATTACCAACTGGATGAAGTCTTCATTTTTCCTTATGATATGGGAAGTAAGTGGAAGAACTTTAAACAGGTGTTTACATGGTCGGGAGTTCCTGAAGGAGATGGACTTGAGTGGCCAATACGAGAGGGCTGTGACCAGTACAGCCTCACAATA agctactgctgagggaagtgacttgcaaccccccctcgtctgcctctcagGCTAAGGATCACATTCAGTATTATCAACTGGATGAAGTATCCATTTTCCCTTATGATATGGGCAGTAAGTGGAAGAACTTTAAACAAGTGTTTACATGGTCAGGAGTTCCTGAAGGAGATGGACTAGAGTGGCCAATACGAGAAGGCTGTGACCAGTACAGCCTCACGGTAattagctagtttgcttggctctagccattactgtatcaatttggccc Alignment from GeneWise GCTAAAGATCGCATTCAGTATTACCAACTGGATGAAGTCTTCATTTTTCCTTATGATATGGGAAGTAAGTGGAAGAACTTTAAACAGGTGTTTACATGGTCGGGAGTTCCTGAAGGAGATGGACTTGAGTGGCCAATACGAGAGGGCTGTGACCAGTACAGCCTCACA agctactgctgagggaagtgacttgcaaccccccctcgtctgcctctcagGCTAAGGATCACATTCAGTATTATCAACTGGATGAAGTATCCATTTTCCCTTATGATATGGGCAGTAAGTGGAAGAACTTTAAACAAGTGTTTACATGGTCAGGAGTTCCTGAAGGAGATGGACTAGAGTGGCCAATACGAGAAGGCTGTGACCAGTACAGCCTCACGgtaattagctagtttgcttggctctagccattactgtatcaatttggccc #### Zdhhc6_ID11624_5 --> 0 - 0 Original Alignment ATAAAAATTATTCTCAGAAACAAAACTTCTATTGAATCATGGATTGAAGAAAAG gtcaaacgaaacatatatttgtggcgtcttgtttttttaatgtcctacagATAAAAATTATTCTCAGAAACAAAACTTCTATTGAATCATGGGTTGAAGAAAAGgtaatgacctacctcatgatatggggtggggtctatcatggagagtgaca Alignment from CESAR ATAAAAATTATTCTCAGAAACAAAACTTCTATTGAATCATGGATTGAAGAAAAG gtcaaacgaaacatatatttgtggcgtcttgtttttttaatgtcctacagATAAAAATTATTCTCAGAAACAAAACTTCTATTGAATCATGGGTTGAAGAAAAGgtaatgacctacctcatgatatggggtggggtctatcatggagagtgaca Alignment from Spaln_aa2Genome ATAAAAATTATTCTCAGAAACAAAACTTCTATTGAATCATGGATTGAAGAAAAG gtcaaacgaaacatatatttgtggcgtcttgtttttttaatgtcctacagATAAAAATTATTCTCAGAAACAAAACTTCTATTGAATCATGGGTTGAAGAAAAGgtaatgacctacctcatgatatggggtggggtctatcatggagagtgaca Alignment from Spaln_nt2Genome ATAAAAATTATTCTCAGAAACAAAACTTCTATTGAATCATGGATTGAAGAAAAG gtcaaacgaaacatatatttgtggcgtcttgtttttttaatgtcctacagATAAAAATTATTCTCAGAAACAAAACTTCTATTGAATCATGGGTTGAAGAAAAGgtaatgacctacctcatgatatggggtggggtctatcatggagagtgaca Alignment from Pairagon ATAAAAATTATTCTCAGAAACAAAACTTCTATTGAATCATGGATTGAAGAAAAG gtcaaacgaaacatatatttgtggcgtcttgtttttttaatgtcctacagATAAAAATTATTCTCAGAAACAAAACTTCTATTGAATCATGGGTTGAAGAAAAGgtaatgacctacctcatgatatggggtggggtctatcatggagagtgaca Alignment from Exonerate_protein2genome ATAAAAATTATTCTCAGAAACAAAACTTCTATTGAATCATGGATTGAAGAAAAG gtcaaacgaaacatatatttgtggcgtcttgtttttttaatgtcctacagATAAAAATTATTCTCAGAAACAAAACTTCTATTGAATCATGGGTTGAAGAAAAGgtaatgacctacctcatgatatggggtggggtctatcatggagagtgaca Alignment from Exonerate_coding2genome ATAAAAATTATTCTCAGAAACAAAACTTCTATTGAATCATGGATTGAAGAAAAG gtcaaacgaaacatatatttgtggcgtcttgtttttttaatgtcctacagATAAAAATTATTCTCAGAAACAAAACTTCTATTGAATCATGGGTTGAAGAAAAGgtaatgacctacctcatgatatggggtggggtctatcatggagagtgaca Alignment from GeneWise ATAAAAATTATTCTCAGAAACAAAACTTCTATTGAATCATGGATTGAAGAAAAG gtcaaacgaaacatatatttgtggcgtcttgtttttttaatgtcctacagATAAAAATTATTCTCAGAAACAAAACTTCTATTGAATCATGGGTTGAAGAAAAGgtaatgacctacctcatgatatggggtggggtctatcatggagagtgaca #### Zfand5_ID4880_3 --> 1 - 1 Original Alignment aAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACTACCCCGAAAACAGAGGTGTCAGAGCCAg tagttcaaatagcaatttggaggggaagtgctttgatatttttattttaggAATGTGCCCGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATCTCAAGAGAGGACAAAATAACCACCCCACAAACTGAAGTAGCAGAGCCAggtgagttttgtaattatgagtaggaacccaggatgggatgatcaaggtct Alignment from CESAR aAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACTACCCCGAAAACAGAGGTGTCAGAGCCAg tagttcaaatagcaatttggaggggaagtgctttgatatttttattttaggAATGTGCCCGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATCTCAAGAGAGGACAAAATAACCACCCCACAAACTGAAGTAGCAGAGCCAggtgagttttgtaattatgagtaggaacccaggatgggatgatcaaggtct Alignment from Spaln_aa2Genome AAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACTACCCCGAAAACAGAGGTGTCAGAGCCAG tagttcaaatagcaatttggaggggaagtgctttgatatttttattttagGAATGTGCCCGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATCTCAAGAGAGGACAAAATAACCACCCCACAAACTGAAGTAGCAGAGCCAGgtgagttttgtaattatgagtaggaacccaggatgggatgatcaaggtct Alignment from Spaln_nt2Genome AAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACTACCCCGAAAACAGAGGTGTCAGAGCCAG tagttcaaatagcaatttggaggggaagtgctttgatatttttattttagGAATGTGCCCGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATCTCAAGAGAGGACAAAATAACCACCCCACAAACTGAAGTAGCAGAGCCAGgtgagttttgtaattatgagtaggaacccaggatgggatgatcaaggtct Alignment from Pairagon AAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACTACCCCGAAAACAGAGGTGTCAGAGCCAG tagttcaaatagcaatttggaggggaagtgctttgatatttttattttagGAATGTGCCCGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATCTCAAGAGAGGACAAAATAACCACCCCACAAACTGAAGTAGCAGAGCCAGgtgagttttgtaattatgagtaggaacccaggatgggatgatcaaggtct Alignment from Exonerate_protein2genome AAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACTACCCCGAAAACAGAGGTGTCAGAGCCAG tagttcaaatagcaatttggaggggaagtgctttgatatttttattttagGAATGTGCCCGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATCTCAAGAGAGGACAAAATAACCACCCCACAAACTGAAGTAGCAGAGCCAGgtgagttttgtaattatgagtaggaacccaggatgggatgatcaaggtct Alignment from Exonerate_coding2genome AAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACTACCCCGAAAACAGAGGTGTCAGAGCCAG tagttcaaatagcaatttggaggggaagtgctttgatatttttattttagGAATGTGCCCGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATCTCAAGAGAGGACAAAATAACCACCCCACAAACTGAAGTAGCAGAGCCAGgtgagttttgtaattatgagtaggaacccaggatgggatgatcaaggtct Alignment from GeneWise AAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACTACCCCGAAAACAGAGGTGTCAGAGCCAG tagttcaaatagcaatttggaggggaagtgctttgatatttttattttagGAATGTGCCCGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATCTCAAGAGAGGACAAAATAACCACCCCACAAACTGAAGTAGCAGAGCCAGgtgagttttgtaattatgagtaggaacccaggatgggatgatcaaggtct #### Zfp91_ID3458_8 --> 1 - 0 Original Alignment aAAAAAGCCTCCAATCCAATATGTCCGTTGTGAGATGGAAGGATGTGGAACTGTTCTTGCTCACCCTCGCTATTTGCAG tgtatggacatcccaatttcatccctttttctcctcctccttttccacaggAAAAAACCTCCAAAAAAGTATGTACATTGTGAGATGGAAGGTTGTGGCTCCGTTCATGCTCGACCTCATTATATACAGgtaagagaaagacaggacagtctttctagagtgtttatatccttcaagtg Alignment from CESAR aAAAAAGCCTCCAATCCAATATGTCCGTTGTGAGATGGAAGGATGTGGAACTGTTCTTGCTCACCCTCGCTATTTGCAG tgtatggacatcccaatttcatccctttttctcctcctccttttccacaggAAAAAACCTCCAAAAAAGTATGTACATTGTGAGATGGAAGGTTGTGGCTCCGTTCATGCTCGACCTCATTATATACAGgtaagagaaagacaggacagtctttctagagtgtttatatccttcaagtg Alignment from Spaln_aa2Genome AAAAAAGCCTCCAATCCAATATGTCCGTTGTGAGATGGAAGGATGTGGAACTGTTCTTGCTCACCCTCGCTATTTGCAG tgtatggacatcccaatttcatccctttttctcctcctccttttccacagGAAAAAACCTCCAAAAAAGTATGTACATTGTGAGATGGAAGGTTGTGGCTCCGTTCATGCTCGACCTCATTATATACAGgtaagagaaagacaggacagtctttctagagtgtttatatccttcaagtg Alignment from Spaln_nt2Genome AAAAAAGCCTCCAATCCAATATGTCCGTTGTGAGATGGAAGGATGTGGAACTGTTCTTGCTCACCCTCGCTATTTGCAG tgtatggacatcccaatttcatccctttttctcctcctccttttccacagGAAAAAACCTCCAAAAAAGTATGTACATTGTGAGATGGAAGGTTGTGGCTCCGTTCATGCTCGACCTCATTATATACAGgtaagagaaagacaggacagtctttctagagtgtttatatccttcaagtg Alignment from Pairagon AAAAAAGCCTCCAATCCAATATGTCCGTTGTGAGATGGAAGGATGTGGAACTGTTCTTGCTCACCCTCGCTATTTGCAG tgtatggacatcccaatttcatccctttttctcctcctccttttccacagGAAAAAACCTCCAAAAAAGTATGTACATTGTGAGATGGAAGGTTGTGGCTCCGTTCATGCTCGACCTCATTATATACAGgtaagagaaagacaggacagtctttctagagtgtttatatccttcaagtg Alignment from Exonerate_protein2genome AAGGAGAAAAAAGCCTCCAATCCAATATGTCCGTTGTGAGATGGAAGGATGTGGAACTGTTCTTGCTCACCCTCGCTATTTGCAG tgtatggacatcccaatttcatccctttttctcctcctccttttCCACAGGAAAAAACCTCCAAAAAAGTATGTACATTGTGAGATGGAAGGTTGTGGCTCCGTTCATGCTCGACCTCATTATATACAGgtaagagaaagacaggacagtctttctagagtgtttatatccttcaagtg Alignment from Exonerate_coding2genome AAGGAGAAAAAAGCCTCCAATCCAATATGTCCGTTGTGAGATGGAAGGATGTGGAACTGTTCTTGCTCACCCTCGCTATTTGCAG tgtatggacatcccaatttcatccctttttctcctcctccttttCCACAGGAAAAAACCTCCAAAAAAGTATGTACATTGTGAGATGGAAGGTTGTGGCTCCGTTCATGCTCGACCTCATTATATACAGgtaagagaaagacaggacagtctttctagagtgtttatatccttcaagtg Alignment from GeneWise AAAAAAGCCTCCAATCCAATATGTCCGTTGTGAGATGGAAGGATGTGGAACTGTTCTTGCTCACCCTCGCTATTTGCAG tgtatggacatcccaatttcatccctttttctcctcctccttttccacagGAAAAAACCTCCAAAAAAGTATGTACATTGTGAGATGGAAGGTTGTGGCTCCGTTCATGCTCGACCTCATTATATACAGgtaagagaaagacaggacagtctttctagagtgtttatatccttcaagtg #### Zfp91_ID3459_7 --> 1 - 2 Original Alignment gAGAGGGAGAAGGCGAAAAGATGACAAAAGTCCGCGGTTACCCAAAAGGag taacatgattctagccttaaaatggacgccctgcccccctcccttctcagaCGAGGGCATAGGCGAAAAGAGGACCTAGGCCCCCAGTTAACCAATAGAaggtacttagggctttctcctttgaactttacacatttgggtggtcacattt Alignment from CESAR gAGAGGGAGAAGGCGAAAAGATGACAAAAGTCCGCGGTTACCCAAAAGGag taacatgattctagccttaaaatggacgccctgcccccctcccttctcagaCGAGGGCATAGGCGAAAAGAGGACCTAGGCCCCCAGTTAACCAATAGAaggtacttagggctttctcctttgaactttacacatttgggtggtcacattt Alignment from Spaln_aa2Genome GAGAGGGAGAAGGCGAAAAGATGACAAAAGTCCGCGGTTACCCAAAAGGAG taacatgattctagccttaaaatggacgccctgcccccctcccttctcagACGAGGGCATAGGCGAAAAGAGGACCTAGGCCCCCAGTTAACCAATAGAAGgtacttagggctttctcctttgaactttacacatttgggtggtcacattt Alignment from Spaln_nt2Genome GAGAGGGAGAAGGCGAAAAGATGACAAAAGTCCGCGGTTACCCAAAAGGAG taacatgattctagccttaaaatggacgccctgcccccctcccttctcagACGAGGGCATAGGCGAAAAGAGGACCTAGGCCCCCAGTTAACCAATAGAAGgtacttagggctttctcctttgaactttacacatttgggtggtcacattt Alignment from Pairagon GAGAGGGAGAAGGCGAAAAGATGACAAAAGTCCGCGGTTACCCAAAAGGAG taacatgattctagccttaaaatggacgccctgcccccctcccttctcagACGAGGGCATAGGCGAAAAGAGGACCTAGGCCCCCAGTTAACCAATAGAAGgtacttagggctttctcctttgaactttacacatttgggtggtcacattt Alignment from Exonerate_protein2genome taacatgattctagccttaaaatggacgccctgcccccctcccttctcagacgagggcataggcgaaaagaggacctaggcccccagttaaccaatagaaggtacttagggctttctcctttgaactttacacatttgggtggtcacattt Alignment from Exonerate_coding2genome taacatgattctagccttaaaatggacgccctgcccccctcccttctcagacgagggcataggcgaaaagaggacctaggcccccagttaaccaatagaaggtacttagggctttctcctttgaactttacacatttgggtggtcacattt Alignment from GeneWise taacatgattctagccttaaaatggacgccctgcccccctcccttctcagacgagggcataggcgaaaagaggacctaggcccccagttaaccaatagaaggtacttagggctttctcctttgaactttacacatttgggtggtcacattt #### Zfp91_ID3461_5 --> 1 - 2 Original Alignment tAGTGATGAGGAAGAGGAGGAGGAAGAAGAAATGTTAATCAGTGAAGAGGAAATACCATTCAAAGATGACCCAAGAGATGAGACTTACAAGCCCCACCTTGAAag gccttgtttggaggttcgatatccaactagggtttttaatttttcttcagtAGCGATGAGGAAGAGGAAGAGGAGGAAGAGATGTTGATCAGTGAAGAAGAAGTATCCTTCAAAGATGACTCAAGAGATGAGTCTTATAAGCCCTACCTTGATaggtaagatttggattgtaccaaatacacattgcaagagaaacctgtattaa Alignment from CESAR tAGTGATGAGGAAGAGGAGGAGGAAGAAGAAATGTTAATCAGTGAAGAGGAAATACCATTCAAAGATGACCCAAGAGATGAGACTTACAAGCCCCACCTTGAAag gccttgtttggaggttcgatatccaactagggtttttaatttttcttcagtAGCGATGAGGAAGAGGAAGAGGAGGAAGAGATGTTGATCAGTGAAGAAGAAGTATCCTTCAAAGATGACTCAAGAGATGAGTCTTATAAGCCCTACCTTGATaggtaagatttggattgtaccaaatacacattgcaagagaaacctgtattaa Alignment from Spaln_aa2Genome TAGTGATGAGGAAGAGGAGGAGGAAGAAGAAATGTTAATCAGTGAAGAGGAAATACCATTCAAAGATGACCCAAGAGATGAGACTTACAAGCCCCACCTTGAAAG gccttgtttggaggttcgatatccaactagggtttttaatttttcttcagTAGCGATGAGGAAGAGGAAGAGGAGGAAGAGATGTTGATCAGTGAAGAAGAAGTATCCTTCAAAGATGACTCAAGAGATGAGTCTTATAAGCCCTACCTTGATAGgtaagatttggattgtaccaaatacacattgcaagagaaacctgtattaa Alignment from Spaln_nt2Genome TAGTGATGAGGAAGAGGAGGAGGAAGAAGAAATGTTAATCAGTGAAGAGGAAATACCATTCAAAGATGACCCAAGAGATGAGACTTACAAGCCCCACCTTGAAAG gccttgtttggaggttcgatatccaactagggtttttaatttttcttcagTAGCGATGAGGAAGAGGAAGAGGAGGAAGAGATGTTGATCAGTGAAGAAGAAGTATCCTTCAAAGATGACTCAAGAGATGAGTCTTATAAGCCCTACCTTGATAGgtaagatttggattgtaccaaatacacattgcaagagaaacctgtattaa Alignment from Pairagon TAGTGATGAGGAAGAGGAGGAGGAAGAAGAAATGTTAATCAGTGAAGAGGAAATACCATTCAAAGATGACCCAAGAGATGAGACTTACAAGCCCCACCTTGAAAG gccttgtttggaggttcgatatccaactagggtttttaatttttcttcagTAGCGATGAGGAAGAGGAAGAGGAGGAAGAGATGTTGATCAGTGAAGAAGAAGTATCCTTCAAAGATGACTCAAGAGATGAGTCTTATAAGCCCTACCTTGATAGgtaagatttggattgtaccaaatacacattgcaagagaaacctgtattaa Alignment from Exonerate_protein2genome ATGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTAGTAGTGATGAGGAAGAGGAGGAGGAAGAAGAAATGTTAATCAGTGAAGAGGAAATACCATTCAAAGATGACCCAAGAGATGAGACTTACAAGCCCCACCTTGAAAG gccttgtttggagGTTCGATATCCAACTAGGGTTTTTAATTTTTCTTCAGTAGCGATGAGGAAGAGGAAGAGGAGGAAGAGATGTTGATCAGTGAAGAAGAAGTATCCTTCAAAGATGACTCAAGAGATGAGTCTTATAAGCCCTACCTTGATAGgtaagatttggattgtaccaaatacacattgcaagagaaacctgtattaa Alignment from Exonerate_coding2genome ATGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTAGTAGTGATGAGGAAGAGGAGGAGGAAGAAGAAATGTTAATCAGTGAAGAGGAAATACCATTCAAAGATGACCCAAGAGATGAGACTTACAAGCCCCACCTTGAAAG gccttgtttggagGTTCGATATCCAACTAGGGTTTTTAATTTTTCTTCAGTAGCGATGAGGAAGAGGAAGAGGAGGAAGAGATGTTGATCAGTGAAGAAGAAGTATCCTTCAAAGATGACTCAAGAGATGAGTCTTATAAGCCCTACCTTGATAGgtaagatttggattgtaccaaatacacattgcaagagaaacctgtattaa Alignment from GeneWise TAGTGATGAGGAAGAGGAGGAGGAAGAAGAAATGTTAATCAGTGAAGAGGAAATACCATTCAAAGATGACCCAAGAGATGAGACTTACAAGCCCCACCTTGAAAG gccttgtttggaggttcgatatccaactagggtttttaatttttcttcagTAGCGATGAGGAAGAGGAAGAGGAGGAAGAGATGTTGATCAGTGAAGAAGAAGTATCCTTCAAAGATGACTCAAGAGATGAGTCTTATAAGCCCTACCTTGATAGgtaagatttggattgtaccaaatacacattgcaagagaaacctgtattaa #### Zfyve27_ID8424_6 --> 2 - 0 Original Alignment tgGTGTGTGAGTACAGGGCCTGCCTGCAGCGGAGGATGAACCCCCGGCAGGAAGAGTGTGCCTGTGAGAGCTCAGCACTGCAGGGGGCCGGAGGGAGGGGCCTGCTGGACAGCTCGCCTGCCCCCACACCCACCGAG gacaggttgtgttcgacattctctgcctttacttaaaatgttcttttaagtaGTGTGTGAGTACAGAGCCTGCCTACAATGGAGGATCAATCTACGGCTTGAAGAATATGCATGTGAGTGCTCAGCATTACAAGGGTCTGGAGGGCGAGGCTTGCTGGACAGT------GCT---GCACTAACTGAAgtgagtatggccctgctatcagctcaagaggtgctgccagtctctcatat Alignment from CESAR tgGTGTGTGAGTACAGGGCCTGCCTGCAGCGGAGGATGAACCCCCGGCAGGAAGAGTGTGCCTGTGAGAGCTCAGCACTGCAGGGGGCCGGAGGGAGGGGCCTGCTGGACAGCTCGCCTGCCCCCACACCCACCGAG gacaggttgtgttcgacattctctgcctttacttaaaatgttcttttaagtaGTGTGTGAGTACAGAGCCTGCCTACAATGGAGGATCAATCTACGGCTTGAAGAATATGCATGTGAGTGCTCAGCATTACAAGGGTCTGGAGGGCGAGGCTTGCTGGACAGTGCT---------GCACTAACTGAAgtgagtatggccctgctatcagctcaagaggtgctgccagtctctcatat Alignment from Spaln_aa2Genome TGGTGTGTGAGTACAGGGCCTGCCTGCAGCGGAGGATGAACCCCCGGCAGGAAGAGTGTGCCTGTGAGAGCTCAGCACTGCAGGGGGCCGGAGGGAGGGGCCTGCTGGACAGCTCGCCTGCCCCCACACCCACCGAG gacaggttgtgttcgacattctctgcctttacttaaaatgttcttttaagTAGTGTGTGAGTACAGAGCCTGCCTACAATGGAGGATCAATCTACGGCTTGAAGAATATGCATGTGAGTGCTCAGCATTACAAGGGTCTGGAGGGCGAGGCTTGCTGGACAGTGCT---------GCACTAACTGAAgtgagtatggccctgctatcagctcaagaggtgctgccagtctctcatat Alignment from Spaln_nt2Genome TGGTGTGTGAGTACAGGGCCTGCCTGCAGCGGAGGATGAACCCCCGGCAGGAAGAGTGTGCCTGTGAGAGCTCAGCACTGCAGGGGGCCGGAGGGAGGGGCCTGCTGGACAGCTCGCCTGCCCCCACA gacaggttgtgttcgacattctctgcctttacttaaaatgttcttttaagTAGTGTGTGAGTACAGAGCCTGCCTACAATGGAGGATCAATCTACGGCTTGAAGAATATGCATGTGAGTGCTCAGCATTACAAGGGTCTGGAGGGCGAGGCTTGCTGGACAGTGCTGCACTAACTGAAgtgagtatggccctgctatcagctcaagaggtgctgccagtctctcatat Alignment from Pairagon TGGTGTGTGAGTACAGGGCCTGCCTGCAGCGGAGGATGAACCCCCGGCAGGAAGAGTGTGCCTGTGAGAGCTCAGCACTGCAGGGGGCCGGAGGGAGGGGCCTGCTGGACA gacaggttgtgttcgacattctctgcctttacttaaaatgttcttttaagTAGTGTGTGAGTACAGAGCCTGCCTACAATGGAGGATCAATCTACGGCTTGAAGAATATGCATGTGAGTGCTCAGCATTACAAGGGTCTGGAGGGCGAGGCTTGCTGGACAgtgctgcactaactgaagtgagtatggccctgctatcagctcaagaggtgctgccagtctctcatat Alignment from Exonerate_protein2genome TGGTGTGTGAGTACAGGGCCTGCCTGCAGCGGAGGATGAACCCCCGGCAGGAAGAGTGTGCCTGTGAGAGCTCAGCACTGCAGGGGGCCGGAGGGAGGGGCCTGCTGGACAGCTCGCCTGCCCCCACACCCACCGAG gacaggttgtgttcgacattctctgcctttacttaaaatgttcttttaagTAGTGTGTGAGTACAGAGCCTGCCTACAATGGAGGATCAATCTACGGCTTGAAGAATATGCATGTGAGTGCTCAGCATTACAAGGGTCTGGAGGGCGAGGCTTGCTGGACAGTGCTGCACTA---------ACTGAAgtgagtatggccctgctatcagctcaagaggtgctgccagtctctcatat Alignment from Exonerate_coding2genome TGGTGTGTGAGTACAGGGCCTGCCTGCAGCGGAGGATGAACCCCCGGCAGGAAGAGTGTGCCTGTGAGAGCTCAGCACTGCAGGGGGCCGGAGGGAGGGGCCTGCTGGACAGCTCGCCTGCCCCCACACCCACCGAG gacaggttgtgttcgacattctctgcctttacttaaaatgttcttttaagTAGTGTGTGAGTACAGAGCCTGCCTACAATGGAGGATCAATCTACGGCTTGAAGAATATGCATGTGAGTGCTCAGCATTACAAGGGTCTGGAGGGCGAGGCTTGCTGGACAGTGCTGCACTA---------ACTGAAgtgagtatggccctgctatcagctcaagaggtgctgccagtctctcatat Alignment from GeneWise TGGTGTGTGAGTACAGGGCCTGCCTGCAGCGGAGGATGAACCCCCGGCAGGAAGAGTGTGCCTGTGAGAGCTCAGCACTGCAGGGGGCCGGAGGGAGGGGCCTGCTGGACAGCTCGCCTGCCCCCACACCCACCGAG gacaggttgtgttcgacattctctgcctttacttaaaatgttcttttaagTAGTGTGTGAGTACAGAGCCTGCCTACAATGGAGGATCAATCTACGGCTTGAAGAATATGCATGTGAGTGCTCAGCATTACAAGGGTCTGGAGGGCGAGGCTTGCTGGACAGTGCTGCACTA---------ACTGAAgtgagtatggccctgctatcagctcaagaggtgctgccagtctctcatat #### Zp1_ID3061_11 --> 2 - 1 Original Alignment ggCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAg attttgatgccctccatgggccttgttaactggtatcttctgtttaacagagCGTCGACGGTTCCCAGGGCATCACAACATCACTCTCCGAGCCCTGGAAATTGTAAGCTCCCCAGGCACAGTGGACTTTGAGGATGCAGCCACACTTAAGCCTTTAggtgagtatgtgtcagtgttctttatgggggagagctcaggtcaaccagga Alignment from CESAR ggCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAg attttgatgccctccatgggccttgttaactggtatcttctgtttaacagagCGTCGACGGTTCCCAGGGCATCACAACATCACTCTCCGAGCCCTGGAAATTGTAAGCTCCCCAGGCACAGTGGACTTTGAGGATGCAGCCACACTTAAGCCTTTAggtgagtatgtgtcagtgttctttatgggggagagctcaggtcaaccagga Alignment from Spaln_aa2Genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG attttgatgccctccatgggccttgttaactggtatcttctgtttaacagAGCGTCGACGGTTCCCAGGGCATCACAACATCACTCTCCGAGCCCTGGAAATTGTAAGCTCCCCAGGCACAGTGGACTTTGAGGATGCAGCCACACTTAAGCCTTTAGgtgagtatgtgtcagtgttctttatgggggagagctcaggtcaaccagga Alignment from Spaln_nt2Genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG attttgatgccctccatgggccttgttaactggtatcttctgtttaacagAGCGTCGACGGTTCCCAGGGCATCACAACATCACTCTCCGAGCCCTGGAAATTGTAAGCTCCCCAGGCACAGTGGACTTTGAGGATGCAGCCACACTTAAGCCTTTAGgtgagtatgtgtcagtgttctttatgggggagagctcaggtcaaccagga Alignment from Pairagon GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG attttgatgccctccatgggccttgttaactggtatcttctgtttaacagAGCGTCGACGGTTCCCAGGGCATCACAACATCACTCTCCGAGCCCTGGAAATTGTAAGCTCCCCAGGCACAGTGGACTTTGAGGATGCAGCCACACTTAAGCCTTTAGgtgagtatgtgtcagtgttctttatgggggagagctcaggtcaaccagga Alignment from Exonerate_protein2genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG attttgatgccctccatgggccttgttaactggtatcttctgtttaacagAGCGTCGACGGTTCCCAGGGCATCACAACATCACTCTCCGAGCCCTGGAAATTGTAAGCTCCCCAGGCACAGTGGACTTTGAGGATGCAGCCACACTTAAGCCTTTAGgtgagtatgtgtcagtgttctttatgggggagagctcaggtcaaccagga Alignment from Exonerate_coding2genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG attttgatgccctccatgggccttgttaactggtatcttctgtttaacagAGCGTCGACGGTTCCCAGGGCATCACAACATCACTCTCCGAGCCCTGGAAATTGTAAGCTCCCCAGGCACAGTGGACTTTGAGGATGCAGCCACACTTAAGCCTTTAGgtgagtatgtgtcagtgttctttatgggggagagctcaggtcaaccagga Alignment from GeneWise GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG attttgatgccctccatgggccttgttaactggtatcttctgtttaacagAGCGTCGACGGTTCCCAGGGCATCACAACATCACTCTCCGAGCCCTGGAAATTGTAAGCTCCCCAGGCACAGTGGACTTTGAGGATGCAGCCACACTTAAGCCTTTAGgtgagtatgtgtcagtgttctttatgggggagagctcaggtcaaccagga #### Zp1_ID3066_6 --> 0 - 2 Original Alignment GTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAAAAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCcg atggcatgtcacatcatcttccagagatgactgcttgtcctcgtcttcagGTGGTTGGCAAACAACTCATTTATGAGAACCAACTGGTGTCTGATATTGATGTTCAAAAGGGGCCACAAGGTTCTATCACACATGACAGCACCTTTcggtaaccactaactaggcaggcctatgttgtcaacatgcatgtggtataaa Alignment from CESAR GTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAAAAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCcg atggcatgtcacatcatcttccagagatgactgcttgtcctcgtcttcagGTGGTTGGCAAACAACTCATTTATGAGAACCAACTGGTGTCTGATATTGATGTTCAAAAGGGGCCACAAGGTTCTATCACACATGACAGCACCTTTcggtaaccactaactaggcaggcctatgttgtcaacatgcatgtggtataaa Alignment from Spaln_aa2Genome GTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAAAAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCCG atggcatgtcacatcatcttccagagatgactgcttgtcctcgtcttcagGTGGTTGGCAAACAACTCATTTATGAGAACCAACTGGTGTCTGATATTGATGTTCAAAAGGGGCCACAAGGTTCTATCACACATGACAGCACCTTTCGgtaaccactaactaggcaggcctatgttgtcaacatgcatgtggtataaa Alignment from Spaln_nt2Genome GTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAAAAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCCG atggcatgtcacatcatcttccagagatgactgcttgtcctcgtcttcagGTGGTTGGCAAACAACTCATTTATGAGAACCAACTGGTGTCTGATATTGATGTTCAAAAGGGGCCACAAGGTTCTATCACACATGACAGCACCTTTCGgtaaccactaactaggcaggcctatgttgtcaacatgcatgtggtataaa Alignment from Pairagon GTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAAAAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCCG atggcatgtcacatcatcttccagagatgactgcttgtcctcgtcttcagGTGGTTGGCAAACAACTCATTTATGAGAACCAACTGGTGTCTGATATTGATGTTCAAAAGGGGCCACAAGGTTCTATCACACATGACAGCACCTTTCGgtaaccactaactaggcaggcctatgttgtcaacatgcatgtggtataaa Alignment from Exonerate_protein2genome GTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAAAAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCCG atggcatgtcacatcatcttccagagatgactgcttgtcctcgtcttcagGTGGTTGGCAAACAACTCATTTATGAGAACCAACTGGTGTCTGATATTGATGTTCAAAAGGGGCCACAAGGTTCTATCACACATGACAGCACCTTTCGgtaaccactaactaggcaggcctatgttgtcaacatgcatgtggtataaa Alignment from Exonerate_coding2genome GTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAAAAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCCG atggcatgtcacatcatcttccagagatgactgcttgtcctcgtcttcagGTGGTTGGCAAACAACTCATTTATGAGAACCAACTGGTGTCTGATATTGATGTTCAAAAGGGGCCACAAGGTTCTATCACACATGACAGCACCTTTCGgtaaccactaactaggcaggcctatgttgtcaacatgcatgtggtataaa Alignment from GeneWise GTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAAAAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCCG atggcatgtcacatcatcttccagagatgactgcttgtcctcgtcttcagGTGGTTGGCAAACAACTCATTTATGAGAACCAACTGGTGTCTGATATTGATGTTCAAAAGGGGCCACAAGGTTCTATCACACATGACAGCACCTTTCGgtaaccactaactaggcaggcctatgttgtcaacatgcatgtggtataaa ####