#### 1700017D01Rik_ID3124_4 --> 0 - 0 Original Alignment CATATGTTTGCAATTATAACAAACATCATAAGTATCTTCGTGGCTATATTTGGTTTAATTCTACTTGGATATGAATTTCCAATTTTTGAATCAATAGGAACTGAATACATTTGGTCAAAT atgctttgatttgtaaattctatttccagcctctatcctttcttctgcagCACATGTTTGCAATCATAATAAACATCATAAGTATCTTTGTTGCAATTTTTGGTTTAATTCTACTTGGATATGAGTTCCCAATTTTTGAATCAGTCGGGACTGAATATATTTGGTCCAATgttagtggtagaaagatcctgcttggccttactcaagctaagtattcgat Alignment from CESAR CATATGTTTGCAATTATAACAAACATCATAAGTATCTTCGTGGCTATATTTGGTTTAATTCTACTTGGATATGAATTTCCAATTTTTGAATCAATAGGAACTGAATACATTTGGTCAAAT atgctttgatttgtaaattctatttccagcctctatcctttcttctgcagCACATGTTTGCAATCATAATAAACATCATAAGTATCTTTGTTGCAATTTTTGGTTTAATTCTACTTGGATATGAGTTCCCAATTTTTGAATCAGTCGGGACTGAATATATTTGGTCCAATgttagtggtagaaagatcctgcttggccttactcaagctaagtattcgat Alignment from Spaln_aa2Genome CATATGTTTGCAATTATAACAAACATCATAAGTATCTTCGTGGCTATATTTGGTTTAATTCTACTTGGATATGAATTTCCAATTTTTGAATCAATAGGAACTGAATACATTTGGTCAAAT atgctttgatttgtaaattctatttccagcctctatcctttcttctgcagCACATGTTTGCAATCATAATAAACATCATAAGTATCTTTGTTGCAATTTTTGGTTTAATTCTACTTGGATATGAGTTCCCAATTTTTGAATCAGTCGGGACTGAATATATTTGGTCCAATgttagtggtagaaagatcctgcttggccttactcaagctaagtattcgat Alignment from Spaln_nt2Genome CATATGTTTGCAATTATAACAAACATCATAAGTATCTTCGTGGCTATATTTGGTTTAATTCTACTTGGATATGAATTTCCAATTTTTGAATCAATAGGAACTGAATACATTTGGTCAAAT atgctttgatttgtaaattctatttccagcctctatcctttcttctgcagCACATGTTTGCAATCATAATAAACATCATAAGTATCTTTGTTGCAATTTTTGGTTTAATTCTACTTGGATATGAGTTCCCAATTTTTGAATCAGTCGGGACTGAATATATTTGGTCCAATgttagtggtagaaagatcctgcttggccttactcaagctaagtattcgat Alignment from Pairagon CATATGTTTGCAATTATAACAAACATCATAAGTATCTTCGTGGCTATATTTGGTTTAATTCTACTTGGATATGAATTTCCAATTTTTGAATCAATAGGAACTGAATACATTTGGTCAAAT atgctttgatttgtaaattctatttccagcctctatcctttcttctgcagCACATGTTTGCAATCATAATAAACATCATAAGTATCTTTGTTGCAATTTTTGGTTTAATTCTACTTGGATATGAGTTCCCAATTTTTGAATCAGTCGGGACTGAATATATTTGGTCCAATgttagtggtagaaagatcctgcttggccttactcaagctaagtattcgat Alignment from Exonerate_protein2genome CATATGTTTGCAATTATAACAAACATCATAAGTATCTTCGTGGCTATATTTGGTTTAATTCTACTTGGATATGAATTTCCAATTTTTGAATCAATAGGAACTGAATACATTTGGTCAAATATGGCTGGCATGATGCTT atgctttgatttgtaaattctatttccagcctctatcctttcttctgcagCACATGTTTGCAATCATAATAAACATCATAAGTATCTTTGTTGCAATTTTTGGTTTAATTCTACTTGGATATGAGTTCCCAATTTTTGAATCAGTCGGGACTGAATATATTTGGTCCAATGTTAGTGGTAGAAAGATCctgcttggccttactcaagctaagtattcgat Alignment from Exonerate_coding2genome CATATGTTTGCAATTATAACAAACATCATAAGTATCTTCGTGGCTATATTTGGTTTAATTCTACTTGGATATGAATTTCCAATTTTTGAATCAATAGGAACTGAATACATTTGGTCAAATATGGCTGGCATGATGCTT atgctttgatttgtaaattctatttccagcctctatcctttcttctgcagCACATGTTTGCAATCATAATAAACATCATAAGTATCTTTGTTGCAATTTTTGGTTTAATTCTACTTGGATATGAGTTCCCAATTTTTGAATCAGTCGGGACTGAATATATTTGGTCCAATGTTAGTGGTAGAAAGATCctgcttggccttactcaagctaagtattcgat Alignment from GeneWise CATATGTTTGCAATTATAACAAACATCATAAGTATCTTCGTGGCTATATTTGGTTTAATTCTACTTGGATATGAATTTCCAATTTTTGAATCAATAGGAACTGAATACATTTGGTCAAAT atgctttgatttgtaaattctatttccagcctctatcctttcttctgcagCACATGTTTGCAATCATAATAAACATCATAAGTATCTTTGTTGCAATTTTTGGTTTAATTCTACTTGGATATGAGTTCCCAATTTTTGAATCAGTCGGGACTGAATATATTTGGTCCAATgttagtggtagaaagatcctgcttggccttactcaagctaagtattcgat #### 1700017D01Rik_ID3125_3 --> 0 - 0 Original Alignment TTCATCAACTCAGGATCCAGCAGTATAACTCAGGGTATTTCTTCAGTATTTCAG cattacttattgaatacatgatctgagtaaagccccctcacggtccacagTTCATCAATTCAGGATCCAGCAGTATAACTCAAGGCATTTCTTCAGTATTTCAGgtaagtggggtatccacataaaggcataggggatcatctatccctaagta Alignment from CESAR TTCATCAACTCAGGATCCAGCAGTATAACTCAGGGTATTTCTTCAGTATTTCAG cattacttattgaatacatgatctgagtaaagccccctcacggtccacagTTCATCAATTCAGGATCCAGCAGTATAACTCAAGGCATTTCTTCAGTATTTCAGgtaagtggggtatccacataaaggcataggggatcatctatccctaagta Alignment from Spaln_aa2Genome TTCATCAACTCAGGATCCAGCAGTATAACTCAGGGTATTTCTTCAGTATTTCAG cattacttattgaatacatgatctgagtaaagccccctcacggtccacagTTCATCAATTCAGGATCCAGCAGTATAACTCAAGGCATTTCTTCAGTATTTCAGgtaagtggggtatccacataaaggcataggggatcatctatccctaagta Alignment from Spaln_nt2Genome TTCATCAACTCAGGATCCAGCAGTATAACTCAGGGTATTTCTTCAGTATTTCAG cattacttattgaatacatgatctgagtaaagccccctcacggtccacagTTCATCAATTCAGGATCCAGCAGTATAACTCAAGGCATTTCTTCAGTATTTCAGgtaagtggggtatccacataaaggcataggggatcatctatccctaagta Alignment from Pairagon TTCATCAACTCAGGATCCAGCAGTATAACTCAGGGTATTTCTTCAGTATTTCAG cattacttattgaatacatgatctgagtaaagccccctcacggtccacagTTCATCAATTCAGGATCCAGCAGTATAACTCAAGGCATTTCTTCAGTATTTCAGgtaagtggggtatccacataaaggcataggggatcatctatccctaagta Alignment from Exonerate_protein2genome TTCATCAACTCAGGATCCAGCAGTATAACTCAGGGTATTTCTTCAGTATTTCAG cattacttattgaatacatgatctgagtaaagccccctcacggtccacagTTCATCAATTCAGGATCCAGCAGTATAACTCAAGGCATTTCTTCAGTATTTCAGgtaagtggggtatccacataaaggcataggggatcatctatccctaagta Alignment from Exonerate_coding2genome TTCATCAACTCAGGATCCAGCAGTATAACTCAGGGTATTTCTTCAGTATTTCAG cattacttattgaatacatgatctgagtaaagccccctcacggtccacagTTCATCAATTCAGGATCCAGCAGTATAACTCAAGGCATTTCTTCAGTATTTCAGgtaagtggggtatccacataaaggcataggggatcatctatccctaagta Alignment from GeneWise TTCATCAACTCAGGATCCAGCAGTATAACTCAGGGTATTTCTTCAGTATTTCAG cattacttattgaatacatgatctgagtaaagccccctcacggtccacagTTCATCAATTCAGGATCCAGCAGTATAACTCAAGGCATTTCTTCAGTATTTCAGgtaagtggggtatccacataaaggcataggggatcatctatccctaagta #### 1700028P14Rik_ID5185_4 --> 1 - 2 Original Alignment gGACCCTGAATTGCCTCCCACAGGCTTTCGGGATGTTCCTATGGAATCCCCACCAGATCCGAGAAAAcc catgggagttgtcatatccaaatcatttaaccctgtgccttctttcctagaGATCCTGAATTGCCTCCCACAGGCTTTCAAGATGTCCCAATGGGCTCACCACCATATCCAAGGAAAccgtggggtacagccagaagagaaatatggtcttctagctccttcttgagaa Alignment from CESAR gGACCCTGAATTGCCTCCCACAGGCTTTCGGGATGTTCCTATGGAATCCCCACCAGATCCGAGAAAAcc catgggagttgtcatatccaaatcatttaaccctgtgccttctttcctagaGATCCTGAATTGCCTCCCACAGGCTTTCAAGATGTCCCAATGGGCTCACCACCATATCCAAGGAAAccgtggggtacagccagaagagaaatatggtcttctagctccttcttgagaa Alignment from Spaln_aa2Genome GGACCCTGAATTGCCTCCCACAGGCTTTCGGGATGTTCCTATGGAATCCCCACCAGATCCGAGAAAACC catgggagttgtcatatccaaatcatttaaccctgtgccttctttcctagAGATCCTGAATTGCCTCCCACAGGCTTTCAAGATGTCCCAATGGGCTCACCACCATATCCAAGGAAACCgtggggtacagccagaagagaaatatggtcttctagctccttcttgagaa Alignment from Spaln_nt2Genome GGACCCTGAATTGCCTCCCACAGGCTTTCGGGATGTTCCTATGGAATCCCCACCAGATCCGAGAAAACC catgggagttgtcatatccaaatcatttaaccctgtgccttctttcctagAGATCCTGAATTGCCTCCCACAGGCTTTCAAGATGTCCCAATGGGCTCACCACCATATCCAAGGAAACCgtggggtacagccagaagagaaatatggtcttctagctccttcttgagaa Alignment from Pairagon CCCCGGGATTTTGGAAAGGGACCCTGAATTGCCTCCCACAGGCTTTCGGGATGTTCCTATGGAATCCCCACCAGATCCGAGAAAACC catgggagttgtcatatccaaatcatttaaccctgtgccttctttcctag------------------AGATCCTGAATTGCCTCCCACAGGCTTTCAAGATGTCCCAATGGGCTCACCACCATATCCAAGGAAACCgtggggtacagccagaagagaaatatggtcttctagctccttcttgagaa Alignment from Exonerate_protein2genome GGACCCTGAATTGCCTCCCACAGGCTTTCGGGATGTTCCTATGGAATCCCCACCAGATCCGAGAAAACC catgggagttgtcatatccaaatcatttaaccctgtgccttctttcctagAGATCCTGAATTGCCTCCCACAGGCTTTCAAGATGTCCCAATGGGCTCACCACCATATCCAAGGAAACCgtggggtacagccagaagagaaatatggtcttctagctccttcttgagaa Alignment from Exonerate_coding2genome GGACCCTGAATTGCCTCCCACAGGCTTTCGGGATGTTCCTATGGAATCCCCACCAGATCCGAGAAAACC catgggagttgtcatatccaaatcatttaaccctgtgccttctttcctagAGATCCTGAATTGCCTCCCACAGGCTTTCAAGATGTCCCAATGGGCTCACCACCATATCCAAGGAAACCgtggggtacagccagaagagaaatatggtcttctagctccttcttgagaa Alignment from GeneWise GGACCCTGAATTGCCTCCCACAGGCTTTCGGGATGTTCCTATGGAATCCCCACCAGATCCGAGAAAACC catgggagttgtcatatccaaatcatttaaccctgtgccttctttcctagAGATCCTGAATTGCCTCCCACAGGCTTTCAAGATGTCCCAATGGGCTCACCACCATATCCAAGGAAACCgtggggtacagccagaagagaaatatggtcttctagctccttcttgagaa #### 1700055N04Rik_ID226_4 --> 0 - 1 Original Alignment CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg cagtctgtctcctgcaaaactttgtgatttcctgcttccatcatacccagCTCACCAAACTGAGCACAGCCTTCATTTGGAAAGAATCCTTTGGCCTGGTGCTTATCATCGCACCATGGAATTCTCATGTTAACCTG---ATCATACCCTCGGTGGGGGTCATTGCTATGggtgagtggtgcctcatgcaacaatcctgatcatccctattttaccatctg Alignment from CESAR CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg cagtctgtctcctgcaaaactttgtgatttcctgcttccatcatacccagCTCACCAAACTGAGCACAGCCTTCATTTGGAAAGAATCCTTTGGCCTGGTGCTTATCATCGCACCATGGAATTCTCATGTTAACCTG---ATCATACCCTCGGTGGGGGTCATTGCTATGggtgagtggtgcctcatgcaacaatcctgatcatccctattttaccatctg Alignment from Spaln_aa2Genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG cagtctgtctcctgcaaaactttgtgatttcctgcttccatcatacccagCTCACCAAACTGAGCACAGCCTTCATTTGGAAAGAATCCTTTGGCCTGGTGCTTATCATCGCACCATGGAATTCTCATGTTAACCTG---ATCATACCCTCGGTGGGGGTCATTGCTATGGgtgagtggtgcctcatgcaacaatcctgatcatccctattttaccatctg Alignment from Spaln_nt2Genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG cagtctgtctcctgcaaaactttgtgatttcctgcttccatcatacccagCTCACCAAACTGAGCACAGCCTTCATTTGGAAAGAATCCTTTGGCCTGGTGCTTATCATCGCACCATGGAATTCTCATGTTAAC---CTGATCATACCCTCGGTGGGGGTCATTGCTATGGgtgagtggtgcctcatgcaacaatcctgatcatccctattttaccatctg Alignment from Pairagon CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG cagtctgtctcctgcaaaactttgtgatttcctgcttccatcatacccagCTCACCAAACTGAGCACAGCCTTCATTTGGAAAGAATCCTTTGGCCTGGTGCTTATCATCGCACCATGGAATTCTCATGTTAACC---TGATCATACCCTCGGTGGGGGTCATTGCTATGGgtgagtggtgcctcatgcaacaatcctgatcatccctattttaccatctg Alignment from Exonerate_protein2genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG cagtctgtctcctgcaaaactttgtgatttcctgcttccatcatacccagCTCACCAAACTGAGCACAGCCTTCATTTGGAAAGAATCCTTTGGCCTGGTGCTTATCATCGCACCATGGAATTCTCATGTTAACCTG---ATCATACCCTCGGTGGGGGTCATTGCTATGGgtgagtggtgcctcatgcaacaatcctgatcatccctattttaccatctg Alignment from Exonerate_coding2genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG cagtctgtctcctgcaaaactttgtgatttcctgcttccatcatacccagCTCACCAAACTGAGCACAGCCTTCATTTGGAAAGAATCCTTTGGCCTGGTGCTTATCATCGCACCATGGAATTCTCATGTTAACCTG---ATCATACCCTCGGTGGGGGTCATTGCTATGGgtgagtggtgcctcatgcaacaatcctgatcatccctattttaccatctg Alignment from GeneWise CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG cagtctgtctcctgcaaaactttgtgatttcctgcttccatcatacccagCTCACCAAACTGAGCACAGCCTTCATTTGGAAAGAATCCTTTGGCCTGGTGCTTATCATCGCACCATGGAATTCTCATGTTAACCTG---ATCATACCCTCGGTGGGGGTCATTGCTATGGgtgagtggtgcctcatgcaacaatcctgatcatccctattttaccatctg #### 1700055N04Rik_ID227_5 --> 2 - 0 Original Alignment gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG attgaggggcacttaacccatcatgtgcctttttattggtttttcttcaggaAACTGTGTGGTGCTTAAAAGATCTGAAATTAGCAGGAATACAGAGAAGGTGTTAGCAGAGCTTCCACCTCAGTATCTAGACCAAgtaagtttattttatgtggttaatttggtaaatggcaaagagagctgaat Alignment from CESAR gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG attgaggggcacttaacccatcatgtgcctttttattggtttttcttcaggaAACTGTGTGGTGCTTAAAAGATCTGAAATTAGCAGGAATACAGAGAAGGTGTTAGCAGAGCTTCCACCTCAGTATCTAGACCAAgtaagtttattttatgtggttaatttggtaaatggcaaagagagctgaat Alignment from Spaln_aa2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG attgaggggcacttaacccatcatgtgcctttttattggtttttcttcagGAAACTGTGTGGTGCTTAAAAGATCTGAAATTAGCAGGAATACAGAGAAGGTGTTAGCAGAGCTTCCACCTCAGTATCTAGACCAAgtaagtttattttatgtggttaatttggtaaatggcaaagagagctgaat Alignment from Spaln_nt2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG attgaggggcacttaacccatcatgtgcctttttattggtttttcttcagGAAACTGTGTGGTGCTTAAAAGATCTGAAATTAGCAGGAATACAGAGAAGGTGTTAGCAGAGCTTCCACCTCAGTATCTAGACCAAgtaagtttattttatgtggttaatttggtaaatggcaaagagagctgaat Alignment from Pairagon GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG attgaggggcacttaacccatcatgtgcctttttattggtttttcttcagGAAACTGTGTGGTGCTTAAAAGATCTGAAATTAGCAGGAATACAGAGAAGGTGTTAGCAGAGCTTCCACCTCAGTATCTAGACCAAgtaagtttattttatgtggttaatttggtaaatggcaaagagagctgaat Alignment from Exonerate_protein2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG attgaggggcacttaacccatcatgtgcctttttattggtttttcttcagGAAACTGTGTGGTGCTTAAAAGATCTGAAATTAGCAGGAATACAGAGAAGGTGTTAGCAGAGCTTCCACCTCAGTATCTAGACCAAgtaagtttattttatgtggttaatttggtaaatggcaaagagagctgaat Alignment from Exonerate_coding2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG attgaggggcacttaacccatcatgtgcctttttattggtttttcttcagGAAACTGTGTGGTGCTTAAAAGATCTGAAATTAGCAGGAATACAGAGAAGGTGTTAGCAGAGCTTCCACCTCAGTATCTAGACCAAgtaagtttattttatgtggttaatttggtaaatggcaaagagagctgaat Alignment from GeneWise GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG attgaggggcacttaacccatcatgtgcctttttattggtttttcttcagGAAACTGTGTGGTGCTTAAAAGATCTGAAATTAGCAGGAATACAGAGAAGGTGTTAGCAGAGCTTCCACCTCAGTATCTAGACCAAgtaagtttattttatgtggttaatttggtaaatggcaaagagagctgaat #### 1700055N04Rik_ID231_9 --> 0 - 1 Original Alignment GTCATCAAACAGGTGTTGGCCCGGACCAGCAGCGGGGGCTTCTGTGGGAACGATGGCTTCATGTACATGACCCTGTCCAGCCTTCCTTTTGGAGGAGTGg cacgtgctcagatatagctccatagaaacctgacccccacctctccccagGTAATCAAACAGGCTTTTGTCCGGAGCAGTGGTGGAGGCTTCTGTGGAAATGATGGGTTCATGTACATGACTCTGTCCAGCCTTCCTTTTGGAGGGGTGggtatgttaagataaagttgtggcctcttcggtcagttttccttgtgggga Alignment from CESAR GTCATCAAACAGGTGTTGGCCCGGACCAGCAGCGGGGGCTTCTGTGGGAACGATGGCTTCATGTACATGACCCTGTCCAGCCTTCCTTTTGGAGGAGTGg cacgtgctcagatatagctccatagaaacctgacccccacctctccccagGTAATCAAACAGGCTTTTGTCCGGAGCAGTGGTGGAGGCTTCTGTGGAAATGATGGGTTCATGTACATGACTCTGTCCAGCCTTCCTTTTGGAGGGGTGggtatgttaagataaagttgtggcctcttcggtcagttttccttgtgggga Alignment from Spaln_aa2Genome GTCATCAAACAGGTGTTGGCCCGGACCAGCAGCGGGGGCTTCTGTGGGAACGATGGCTTCATGTACATGACCCTGTCCAGCCTTCCTTTTGGAGGAGTGG cacgtgctcagatatagctccatagaaacctgacccccacctctccccagGTAATCAAACAGGCTTTTGTCCGGAGCAGTGGTGGAGGCTTCTGTGGAAATGATGGGTTCATGTACATGACTCTGTCCAGCCTTCCTTTTGGAGGGGTGGgtatgttaagataaagttgtggcctcttcggtcagttttccttgtgggga Alignment from Spaln_nt2Genome GTCATCAAACAGGTGTTGGCCCGGACCAGCAGCGGGGGCTTCTGTGGGAACGATGGCTTCATGTACATGACCCTGTCCAGCCTTCCTTTTGGAGGAGTGG cacgtgctcagatatagctccatagaaacctgacccccacctctccccagGTAATCAAACAGGCTTTTGTCCGGAGCAGTGGTGGAGGCTTCTGTGGAAATGATGGGTTCATGTACATGACTCTGTCCAGCCTTCCTTTTGGAGGGGTGGgtatgttaagataaagttgtggcctcttcggtcagttttccttgtgggga Alignment from Pairagon GTCATCAAACAGGTGTTGGCCCGGACCAGCAGCGGGGGCTTCTGTGGGAACGATGGCTTCATGTACATGACCCTGTCCAGCCTTCCTTTTGGAGGAGTGG cacgtgctcagatatagctccatagaaacctgacccccacctctccccagGTAATCAAACAGGCTTTTGTCCGGAGCAGTGGTGGAGGCTTCTGTGGAAATGATGGGTTCATGTACATGACTCTGTCCAGCCTTCCTTTTGGAGGGGTGGgtatgttaagataaagttgtggcctcttcggtcagttttccttgtgggga Alignment from Exonerate_protein2genome GTCATCAAACAGGTGTTGGCCCGGACCAGCAGCGGGGGCTTCTGTGGGAACGATGGCTTCATGTACATGACCCTGTCCAGCCTTCCTTTTGGAGGAGTGG cacgtgctcagatatagctccatagaaacctgacccccacctctccccagGTAATCAAACAGGCTTTTGTCCGGAGCAGTGGTGGAGGCTTCTGTGGAAATGATGGGTTCATGTACATGACTCTGTCCAGCCTTCCTTTTGGAGGGGTGGgtatgttaagataaagttgtggcctcttcggtcagttttccttgtgggga Alignment from Exonerate_coding2genome GTCATCAAACAGGTGTTGGCCCGGACCAGCAGCGGGGGCTTCTGTGGGAACGATGGCTTCATGTACATGACCCTGTCCAGCCTTCCTTTTGGAGGAGTGG cacgtgctcagatatagctccatagaaacctgacccccacctctccccagGTAATCAAACAGGCTTTTGTCCGGAGCAGTGGTGGAGGCTTCTGTGGAAATGATGGGTTCATGTACATGACTCTGTCCAGCCTTCCTTTTGGAGGGGTGGgtatgttaagataaagttgtggcctcttcggtcagttttccttgtgggga Alignment from GeneWise GTCATCAAACAGGTGTTGGCCCGGACCAGCAGCGGGGGCTTCTGTGGGAACGATGGCTTCATGTACATGACCCTGTCCAGCCTTCCTTTTGGAGGAGTGG cacgtgctcagatatagctccatagaaacctgacccccacctctccccagGTAATCAAACAGGCTTTTGTCCGGAGCAGTGGTGGAGGCTTCTGTGGAAATGATGGGTTCATGTACATGACTCTGTCCAGCCTTCCTTTTGGAGGGGTGGgtatgttaagataaagttgtggcctcttcggtcagttttccttgtgggga #### 1700123I01Rik_ID1491_3 --> 0 - 1 Original Alignment GATTCTATCCGTGCAGTCTTGGCA---AACATGGACAGCCTGCAACCCTTTGTTACAGAACACTTCATTGTATTTCCCt caccattaatgtctactgtagtctctgatgtcctgtgcttctcctattagGACTCAATCCTTGCAGTCTTGGACAACAATATGGACAGTCTGCAACCATTTGTTACCAAACACTTCATTGTATTTCCTtgtacacttactcattttattattgtcaaacccacagtagacctgaagaat Alignment from CESAR GATTCTATCCGTGCAGTCTTGGCAAAC---ATGGACAGCCTGCAACCCTTTGTTACAGAACACTTCATTGTATTTCCCt caccattaatgtctactgtagtctctgatgtcctgtgcttctcctattagGACTCAATCCTTGCAGTCTTGGACAACAATATGGACAGTCTGCAACCATTTGTTACCAAACACTTCATTGTATTTCCTtgtacacttactcattttattattgtcaaacccacagtagacctgaagaat Alignment from Spaln_aa2Genome GATTCTATCCGTGCAGTCTTG---GCAAACATGGACAGCCTGCAACCCTTTGTTACAGAACACTTCATTGTATTTCCCT caccattaatgtctactgtagtctctgatgtcctgtgcttctcctattagGACTCAATCCTTGCAGTCTTGGACAACAATATGGACAGTCTGCAACCATTTGTTACCAAACACTTCATTGTATTTCCTTgtacacttactcattttattattgtcaaacccacagtagacctgaagaat Alignment from Spaln_nt2Genome GATTCTATCCGTGCAGTCTTGGCAAACA---TGGACAGCCTGCAACCCTTTGTTACAGAACACTTCATTGTATTTCCCT caccattaatgtctactgtagtctctgatgtcctgtgcttctcctattagGACTCAATCCTTGCAGTCTTGGACAACAATATGGACAGTCTGCAACCATTTGTTACCAAACACTTCATTGTATTTCCTTgtacacttactcattttattattgtcaaacccacagtagacctgaagaat Alignment from Pairagon GATTCTATCCGTGCAGTCTTGGCAAAC---ATGGACAGCCTGCAACCCTTTGTTACAGAACACTTCATTGTATTTCCCT caccattaatgtctactgtagtctctgatgtcctgtgcttctcctattagGACTCAATCCTTGCAGTCTTGGACAACAATATGGACAGTCTGCAACCATTTGTTACCAAACACTTCATTGTATTTCCTTgtacacttactcattttattattgtcaaacccacagtagacctgaagaat Alignment from Exonerate_protein2genome GATTCTATCCGTGCAGTCTTG---GCAAACATGGACAGCCTGCAACCCTTTGTTACAGAACACTTCATTGTATTTCCCT caccattaatgtctactgtagtctctgatgtcctgtgcttctcctattagGACTCAATCCTTGCAGTCTTGGACAACAATATGGACAGTCTGCAACCATTTGTTACCAAACACTTCATTGTATTTCCTTgtacacttactcattttattattgtcaaacccacagtagacctgaagaat Alignment from Exonerate_coding2genome GATTCTATCCGTGCAGTCTTG---GCAAACATGGACAGCCTGCAACCCTTTGTTACAGAACACTTCATTGTATTTCCCT caccattaatgtctactgtagtctctgatgtcctgtgcttctcctattagGACTCAATCCTTGCAGTCTTGGACAACAATATGGACAGTCTGCAACCATTTGTTACCAAACACTTCATTGTATTTCCTTgtacacttactcattttattattgtcaaacccacagtagacctgaagaat Alignment from GeneWise GATTCTATCCGTGCAGTCTTGGCAAAC---ATGGACAGCCTGCAACCCTTTGTTACAGAACACTTCATTGTATTTCCCT caccattaatgtctactgtagtctctgatgtcctgtgcttctcctattagGACTCAATCCTTGCAGTCTTGGACAACAATATGGACAGTCTGCAACCATTTGTTACCAAACACTTCATTGTATTTCCTTgtacacttactcattttattattgtcaaacccacagtagacctgaagaat #### 1700123I01Rik_ID1492_4 --> 2 - 1 Original Alignment atAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTTAAACATGGGGAAAGCATCCTGACGCCCTACCCGTTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGACTTGCCTTCCg agccaacaccttgggttccttctacaaggatttgctgtgcttaatttcagacAAAAGTAAGTGGGAGAGAGTTTCCCATCTGAGGTTTAAATATGGGGAAAGCATTTTGACACCCTACCCATTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGATTTGCCTTCGcgtgagtaactgaggtgggttgtaaaaaaaataatgaagagcactcaggac Alignment from CESAR atAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTTAAACATGGGGAAAGCATCCTGACGCCCTACCCGTTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGACTTGCCTTCCg agccaacaccttgggttccttctacaaggatttgctgtgcttaatttcagacAAAAGTAAGTGGGAGAGAGTTTCCCATCTGAGGTTTAAATATGGGGAAAGCATTTTGACACCCTACCCATTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGATTTGCCTTCGcgtgagtaactgaggtgggttgtaaaaaaaataatgaagagcactcaggac Alignment from Spaln_aa2Genome ATAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTTAAACATGGGGAAAGCATCCTGACGCCCTACCCGTTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGACTTGCCTTCCG agccaacaccttgggttccttctacaaggatttgctgtgcttaatttcagACAAAAGTAAGTGGGAGAGAGTTTCCCATCTGAGGTTTAAATATGGGGAAAGCATTTTGACACCCTACCCATTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGATTTGCCTTCGCgtgagtaactgaggtgggttgtaaaaaaaataatgaagagcactcaggac Alignment from Spaln_nt2Genome ATAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTTAAACATGGGGAAAGCATCCTGACGCCCTACCCGTTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGACTTGCCTTCCG agccaacaccttgggttccttctacaaggatttgctgtgcttaatttcagACAAAAGTAAGTGGGAGAGAGTTTCCCATCTGAGGTTTAAATATGGGGAAAGCATTTTGACACCCTACCCATTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGATTTGCCTTCGCgtgagtaactgaggtgggttgtaaaaaaaataatgaagagcactcaggac Alignment from Pairagon ATAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTTAAACATGGGGAAAGCATCCTGACGCCCTACCCGTTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGACTTGCCTTCCG agccaacaccttgggttccttctacaaggatttgctgtgcttaatttcagACAAAAGTAAGTGGGAGAGAGTTTCCCATCTGAGGTTTAAATATGGGGAAAGCATTTTGACACCCTACCCATTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGATTTGCCTTCGCgtgagtaactgaggtgggttgtaaaaaaaataatgaagagcactcaggac Alignment from Exonerate_protein2genome ATAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTTAAACATGGGGAAAGCATCCTGACGCCCTACCCGTTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGACTTGCCTTCCG agccaacaccttgggttccttctacaaggatttgctgtgcttaatttcagACAAAAGTAAGTGGGAGAGAGTTTCCCATCTGAGGTTTAAATATGGGGAAAGCATTTTGACACCCTACCCATTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGATTTGCCTTCGCgtgagtaactgaggtgggttgtaaaaaaaataatgaagagcactcaggac Alignment from Exonerate_coding2genome ATAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTTAAACATGGGGAAAGCATCCTGACGCCCTACCCGTTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGACTTGCCTTCCG agccaacaccttgggttccttctacaaggatttgctgtgcttaatttcagACAAAAGTAAGTGGGAGAGAGTTTCCCATCTGAGGTTTAAATATGGGGAAAGCATTTTGACACCCTACCCATTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGATTTGCCTTCGCgtgagtaactgaggtgggttgtaaaaaaaataatgaagagcactcaggac Alignment from GeneWise ATAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTTAAACATGGGGAAAGCATCCTGACGCCCTACCCGTTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGACTTGCCTTCCG agccaacaccttgggttccttctacaaggatttgctgtgcttaatttcagACAAAAGTAAGTGGGAGAGAGTTTCCCATCTGAGGTTTAAATATGGGGAAAGCATTTTGACACCCTACCCATTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGATTTGCCTTCGCgtgagtaactgaggtgggttgtaaaaaaaataatgaagagcactcaggac #### 1700123I01Rik_ID1494_6 --> 0 - 2 Original Alignment GTCCTAGCTGAGACGGAAGCAGAAGAAGCCACAATGAGGAAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCACACag agtatggctattttgagttgacatatctacttgtcgcttttgcttttcagGTCCTAGTGGAAACTAAGGCAAAAGAAGCAACAAAGAGGGAATGGAAGCGCAGACTCATGGAAGAGCCCAGCTCCCCAAGCAGGCAAGGGTCTTACaggtgagcggtaggagggtgattggtacttcaggtaggttatgtcaactagt Alignment from CESAR GTCCTAGCTGAGACGGAAGCAGAAGAAGCCACAATGAGGAAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCACACag agtatggctattttgagttgacatatctacttgtcgcttttgcttttcagGTCCTAGTGGAAACTAAGGCAAAAGAAGCAACAAAGAGGGAATGGAAGCGCAGACTCATGGAAGAGCCCAGCTCCCCAAGCAGGCAAGGGTCTTACaggtgagcggtaggagggtgattggtacttcaggtaggttatgtcaactagt Alignment from Spaln_aa2Genome GTCCTAGCTGAGACGGAAGCAGAAGAAGCCACAATGAGGAAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCACACAG agtatggctattttgagttgacatatctacttgtcgcttttgcttttcagGTCCTAGTGGAAACTAAGGCAAAAGAAGCAACAAAGAGGGAATGGAAGCGCAGACTCATGGAAGAGCCCAGCTCCCCAAGCAGGCAAGGGTCTTACAGgtgagcggtaggagggtgattggtacttcaggtaggttatgtcaactagt Alignment from Spaln_nt2Genome GTCCTAGCTGAGACGGAAGCAGAAGAAGCCACAATGAGGAAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCACACAG agtatggctattttgagttgacatatctacttgtcgcttttgcttttcagGTCCTAGTGGAAACTAAGGCAAAAGAAGCAACAAAGAGGGAATGGAAGCGCAGACTCATGGAAGAGCCCAGCTCCCCAAGCAGGCAAGGGTCTTACAGgtgagcggtaggagggtgattggtacttcaggtaggttatgtcaactagt Alignment from Pairagon GTCCTAGCTGAGACGGAAGCAGAAGAAGCCACAATGAGGAAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCACACAG agtatggctattttgagttgacatatctacttgtcgcttttgcttttcagGTCCTAGTGGAAACTAAGGCAAAAGAAGCAACAAAGAGGGAATGGAAGCGCAGACTCATGGAAGAGCCCAGCTCCCCAAGCAGGCAAGGGTCTTACAGgtgagcggtaggagggtgattggtacttcaggtaggttatgtcaactagt Alignment from Exonerate_protein2genome GTCCTAGCTGAGACGGAAGCAGAAGAAGCCACAATGAGGAAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCACACAG agtatggctattttgagttgacatatctacttgtcgcttttgcttttcagGTCCTAGTGGAAACTAAGGCAAAAGAAGCAACAAAGAGGGAATGGAAGCGCAGACTCATGGAAGAGCCCAGCTCCCCAAGCAGGCAAGGGTCTTACAGgtgagcggtaggagggtgattggtacttcaggtaggttatgtcaactagt Alignment from Exonerate_coding2genome GTCCTAGCTGAGACGGAAGCAGAAGAAGCCACAATGAGGAAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCACACAG agtatggctattttgagttgacatatctacttgtcgcttttgcttttcagGTCCTAGTGGAAACTAAGGCAAAAGAAGCAACAAAGAGGGAATGGAAGCGCAGACTCATGGAAGAGCCCAGCTCCCCAAGCAGGCAAGGGTCTTACAGgtgagcggtaggagggtgattggtacttcaggtaggttatgtcaactagt Alignment from GeneWise GTCCTAGCTGAGACGGAAGCAGAAGAAGCCACAATGAGGAAATGGAAACGGAAACTCATGGAGGAGCCCAGCTCCCCTAGCAGGCAGGGGCCACACAG agtatggctattttgagttgacatatctacttgtcgcttttgcttttcagGTCCTAGTGGAAACTAAGGCAAAAGAAGCAACAAAGAGGGAATGGAAGCGCAGACTCATGGAAGAGCCCAGCTCCCCAAGCAGGCAAGGGTCTTACAGgtgagcggtaggagggtgattggtacttcaggtaggttatgtcaactagt #### 2410127L17Rik_ID4451_6 --> 2 - 1 Original Alignment atGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGATTATATTGATACAATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTg gtaatacatatattcctgacccataagggccaacttccactgttcctcagatGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGAGTACATAGATACCATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTggtcggggcttgtacattctaaaagagaaatacataaaccatatcactaac Alignment from CESAR atGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGATTATATTGATACAATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTg gtaatacatatattcctgacccataagggccaacttccactgttcctcagatGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGAGTACATAGATACCATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTggtcggggcttgtacattctaaaagagaaatacataaaccatatcactaac Alignment from Spaln_aa2Genome ATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGATTATATTGATACAATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTG gtaatacatatattcctgacccataagggccaacttccactgttcctcagATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGAGTACATAGATACCATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTGgtcggggcttgtacattctaaaagagaaatacataaaccatatcactaac Alignment from Spaln_nt2Genome ATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGATTATATTGATACAATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTG gtaatacatatattcctgacccataagggccaacttccactgttcctcagATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGAGTACATAGATACCATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTGgtcggggcttgtacattctaaaagagaaatacataaaccatatcactaac Alignment from Pairagon ATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGATTATATTGATACAATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTG gtaatacatatattcctgacccataagggccaacttccactgttcctcagATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGAGTACATAGATACCATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTGgtcggggcttgtacattctaaaagagaaatacataaaccatatcactaac Alignment from Exonerate_protein2genome ATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGATTATATTGATACAATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTG gtaatacatatattcctgacccataagggccaacttccactgttcctcagATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGAGTACATAGATACCATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTGgtcggggcttgtacattctaaaagagaaatacataaaccatatcactaac Alignment from Exonerate_coding2genome ATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGATTATATTGATACAATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTG gtaatacatatattcctgacccataagggccaacttccactgttcctcagATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGAGTACATAGATACCATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTGgtcggggcttgtacattctaaaagagaaatacataaaccatatcactaac Alignment from GeneWise ATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGATTATATTGATACAATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTG gtaatacatatattcctgacccataagggccaacttccactgttcctcagATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGAGTACATAGATACCATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTGgtcggggcttgtacattctaaaagagaaatacataaaccatatcactaac #### 2700081O15Rik_ID2152_2 --> 2 - 1 Original Alignment gaCAAGCTCTTCAGCTGGAAGGGGGTGCCTTAGGGTCCTGGGGGAGTACCCCCCTACCCTCCTCCAGGGCCAGGGGACCAGCATCTTCAGGCAGGAAATACTCAGATCATTGTGAGGCTCGGGCCTCGAGGCCTGGAAAGAGTCGCATCCCCGGCAGGGACCACCGGCGCTATTACCACGACCACTGGCGGCTGGAGTACCTGATGGACTTCATCCCCTCCCGGCATGGCATGGTGTGTATGGTGTGTGGCAGCTCCCTGGCCACCCTCAAGCTCAGCACCATCAAGAGGCACATTCGCCAGAAACACCCCTACTCCCTGCACTGGAGTCCCAGGGAGAAGGAAGTGATCAGCAACAGCTGGGACGCCCATCTGGGGCTGGGGGCCGGTGGTGAGGCTGAGAGCCTGGGGGCCCAGGGGGCAGAGGAGGAGGAGGAAGAAGATGAAGAGGAGGAGGAGGGGGCCAACCTGCAAGCTTGCCCACCCAAGGGCTCAg cacttgtccattggtaggtaataacaaaccctgtctgtcccccaacaaaggtCAAGCTCTTCAGCTGGAAGGGGGTGCCTTAGGGTCATGGGGGAGTACACCCCTACCCTCTTCCAGGGCCAGGGGACCCGCCTCTTCCGGAAGGAAATACTCAGATCATTGTGAGGCTCGGGCCTCGAGGCCTGGAAAGAGCCGGATCCCTGGCAGGGACCCACAGCGCTATTACCATGACCACTGGCGGCTGGAGTACTTGATGGACCTCATCCCCTCCCGGCATGGCATGGTGTGTATGGTATGTGGCAGTTCCTTGGCAACACTTAAGCTGAGCACTATCAAAAGGCACATTCGTCAGAAGCACCCCTACTCCCTGCACTGGAGTCCTAGGCAGAAGGAAGTCGTCAGCAACAGCTGGGATGCCCATGTAGGGTTGGGGGCCGGTGGTGAGGTTGAGAGCCTGGGGGCGCAGGGAGCAGAGGAGGAGGAGGAAGAAGATGAAGAGGAAGAGGAGGGGGCCAACCTGCAAGCTTGCCCACCCAAGGGCTCAggtgagaaacatagactaccaacactgggtacaagatagtggattgcattg Alignment from CESAR gaCAAGCTCTTCAGCTGGAAGGGGGTGCCTTAGGGTCCTGGGGGAGTACCCCCCTACCCTCCTCCAGGGCCAGGGGACCAGCATCTTCAGGCAGGAAATACTCAGATCATTGTGAGGCTCGGGCCTCGAGGCCTGGAAAGAGTCGCATCCCCGGCAGGGACCACCGGCGCTATTACCACGACCACTGGCGGCTGGAGTACCTGATGGACTTCATCCCCTCCCGGCATGGCATGGTGTGTATGGTGTGTGGCAGCTCCCTGGCCACCCTCAAGCTCAGCACCATCAAGAGGCACATTCGCCAGAAACACCCCTACTCCCTGCACTGGAGTCCCAGGGAGAAGGAAGTGATCAGCAACAGCTGGGACGCCCATCTGGGGCTGGGGGCCGGTGGTGAGGCTGAGAGCCTGGGGGCCCAGGGGGCAGAGGAGGAGGAGGAAGAAGATGAAGAGGAGGAGGAGGGGGCCAACCTGCAAGCTTGCCCACCCAAGGGCTCAg cacttgtccattggtaggtaataacaaaccctgtctgtcccccaacaaaggtCAAGCTCTTCAGCTGGAAGGGGGTGCCTTAGGGTCATGGGGGAGTACACCCCTACCCTCTTCCAGGGCCAGGGGACCCGCCTCTTCCGGAAGGAAATACTCAGATCATTGTGAGGCTCGGGCCTCGAGGCCTGGAAAGAGCCGGATCCCTGGCAGGGACCCACAGCGCTATTACCATGACCACTGGCGGCTGGAGTACTTGATGGACCTCATCCCCTCCCGGCATGGCATGGTGTGTATGGTATGTGGCAGTTCCTTGGCAACACTTAAGCTGAGCACTATCAAAAGGCACATTCGTCAGAAGCACCCCTACTCCCTGCACTGGAGTCCTAGGCAGAAGGAAGTCGTCAGCAACAGCTGGGATGCCCATGTAGGGTTGGGGGCCGGTGGTGAGGTTGAGAGCCTGGGGGCGCAGGGAGCAGAGGAGGAGGAGGAAGAAGATGAAGAGGAAGAGGAGGGGGCCAACCTGCAAGCTTGCCCACCCAAGGGCTCAggtgagaaacatagactaccaacactgggtacaagatagtggattgcattg Alignment from Spaln_aa2Genome GACAAGCTCTTCAGCTGGAAGGGGGTGCCTTAGGGTCCTGGGGGAGTACCCCCCTACCCTCCTCCAGGGCCAGGGGACCAGCATCTTCAGGCAGGAAATACTCAGATCATTGTGAGGCTCGGGCCTCGAGGCCTGGAAAGAGTCGCATCCCCGGCAGGGACCACCGGCGCTATTACCACGACCACTGGCGGCTGGAGTACCTGATGGACTTCATCCCCTCCCGGCATGGCATGGTGTGTATGGTGTGTGGCAGCTCCCTGGCCACCCTCAAGCTCAGCACCATCAAGAGGCACATTCGCCAGAAACACCCCTACTCCCTGCACTGGAGTCCCAGGGAGAAGGAAGTGATCAGCAACAGCTGGGACGCCCATCTGGGGCTGGGGGCCGGTGGTGAGGCTGAGAGCCTGGGGGCCCAGGGGGCAGAGGAGGAGGAGGAAGAAGATGAAGAGGAGGAGGAGGGGGCCAACCTGCAAGCTTGCCCACCCAAGGGCTCAG cacttgtccattggtaggtaataacaaaccctgtctgtcccccaacaaagGTCAAGCTCTTCAGCTGGAAGGGGGTGCCTTAGGGTCATGGGGGAGTACACCCCTACCCTCTTCCAGGGCCAGGGGACCCGCCTCTTCCGGAAGGAAATACTCAGATCATTGTGAGGCTCGGGCCTCGAGGCCTGGAAAGAGCCGGATCCCTGGCAGGGACCCACAGCGCTATTACCATGACCACTGGCGGCTGGAGTACTTGATGGACCTCATCCCCTCCCGGCATGGCATGGTGTGTATGGTATGTGGCAGTTCCTTGGCAACACTTAAGCTGAGCACTATCAAAAGGCACATTCGTCAGAAGCACCCCTACTCCCTGCACTGGAGTCCTAGGCAGAAGGAAGTCGTCAGCAACAGCTGGGATGCCCATGTAGGGTTGGGGGCCGGTGGTGAGGTTGAGAGCCTGGGGGCGCAGGGAGCAGAGGAGGAGGAGGAAGAAGATGAAGAGGAAGAGGAGGGGGCCAACCTGCAAGCTTGCCCACCCAAGGGCTCAGgtgagaaacatagactaccaacactgggtacaagatagtggattgcattg Alignment from Spaln_nt2Genome GACAAGCTCTTCAGCTGGAAGGGGGTGCCTTAGGGTCCTGGGGGAGTACCCCCCTACCCTCCTCCAGGGCCAGGGGACCAGCATCTTCAGGCAGGAAATACTCAGATCATTGTGAGGCTCGGGCCTCGAGGCCTGGAAAGAGTCGCATCCCCGGCAGGGACCACCGGCGCTATTACCACGACCACTGGCGGCTGGAGTACCTGATGGACTTCATCCCCTCCCGGCATGGCATGGTGTGTATGGTGTGTGGCAGCTCCCTGGCCACCCTCAAGCTCAGCACCATCAAGAGGCACATTCGCCAGAAACACCCCTACTCCCTGCACTGGAGTCCCAGGGAGAAGGAAGTGATCAGCAACAGCTGGGACGCCCATCTGGGGCTGGGGGCCGGTGGTGAGGCTGAGAGCCTGGGGGCCCAGGGGGCAGAGGAGGAGGAGGAAGAAGATGAAGAGGAGGAGGAGGGGGCCAACCTGCAAGCTTGCCCACCCAAGGGCTCAG cacttgtccattggtaggtaataacaaaccctgtctgtcccccaacaaagGTCAAGCTCTTCAGCTGGAAGGGGGTGCCTTAGGGTCATGGGGGAGTACACCCCTACCCTCTTCCAGGGCCAGGGGACCCGCCTCTTCCGGAAGGAAATACTCAGATCATTGTGAGGCTCGGGCCTCGAGGCCTGGAAAGAGCCGGATCCCTGGCAGGGACCCACAGCGCTATTACCATGACCACTGGCGGCTGGAGTACTTGATGGACCTCATCCCCTCCCGGCATGGCATGGTGTGTATGGTATGTGGCAGTTCCTTGGCAACACTTAAGCTGAGCACTATCAAAAGGCACATTCGTCAGAAGCACCCCTACTCCCTGCACTGGAGTCCTAGGCAGAAGGAAGTCGTCAGCAACAGCTGGGATGCCCATGTAGGGTTGGGGGCCGGTGGTGAGGTTGAGAGCCTGGGGGCGCAGGGAGCAGAGGAGGAGGAGGAAGAAGATGAAGAGGAAGAGGAGGGGGCCAACCTGCAAGCTTGCCCACCCAAGGGCTCAGgtgagaaacatagactaccaacactgggtacaagatagtggattgcattg Alignment from Pairagon GACAAGCTCTTCAGCTGGAAGGGGGTGCCTTAGGGTCCTGGGGGAGTACCCCCCTACCCTCCTCCAGGGCCAGGGGACCAGCATCTTCAGGCAGGAAATACTCAGATCATTGTGAGGCTCGGGCCTCGAGGCCTGGAAAGAGTCGCATCCCCGGCAGGGACCACCGGCGCTATTACCACGACCACTGGCGGCTGGAGTACCTGATGGACTTCATCCCCTCCCGGCATGGCATGGTGTGTATGGTGTGTGGCAGCTCCCTGGCCACCCTCAAGCTCAGCACCATCAAGAGGCACATTCGCCAGAAACACCCCTACTCCCTGCACTGGAGTCCCAGGGAGAAGGAAGTGATCAGCAACAGCTGGGACGCCCATCTGGGGCTGGGGGCCGGTGGTGAGGCTGAGAGCCTGGGGGCCCAGGGGGCAGAGGAGGAGGAGGAAGAAGATGAAGAGGAGGAGGAGGGGGCCAACCTGCAAGCTTGCCCACCCAAGGGCTCAG cacttgtccattggtaggtaataacaaaccctgtctgtcccccaacaaagGTCAAGCTCTTCAGCTGGAAGGGGGTGCCTTAGGGTCATGGGGGAGTACACCCCTACCCTCTTCCAGGGCCAGGGGACCCGCCTCTTCCGGAAGGAAATACTCAGATCATTGTGAGGCTCGGGCCTCGAGGCCTGGAAAGAGCCGGATCCCTGGCAGGGACCCACAGCGCTATTACCATGACCACTGGCGGCTGGAGTACTTGATGGACCTCATCCCCTCCCGGCATGGCATGGTGTGTATGGTATGTGGCAGTTCCTTGGCAACACTTAAGCTGAGCACTATCAAAAGGCACATTCGTCAGAAGCACCCCTACTCCCTGCACTGGAGTCCTAGGCAGAAGGAAGTCGTCAGCAACAGCTGGGATGCCCATGTAGGGTTGGGGGCCGGTGGTGAGGTTGAGAGCCTGGGGGCGCAGGGAGCAGAGGAGGAGGAGGAAGAAGATGAAGAGGAAGAGGAGGGGGCCAACCTGCAAGCTTGCCCACCCAAGGGCTCAGgtgagaaacatagactaccaacactgggtacaagatagtggattgcattg Alignment from Exonerate_protein2genome GACAAGCTCTTCAGCTGGAAGGGGGTGCCTTAGGGTCCTGGGGGAGTACCCCCCTACCCTCCTCCAGGGCCAGGGGACCAGCATCTTCAGGCAGGAAATACTCAGATCATTGTGAGGCTCGGGCCTCGAGGCCTGGAAAGAGTCGCATCCCCGGCAGGGACCACCGGCGCTATTACCACGACCACTGGCGGCTGGAGTACCTGATGGACTTCATCCCCTCCCGGCATGGCATGGTGTGTATGGTGTGTGGCAGCTCCCTGGCCACCCTCAAGCTCAGCACCATCAAGAGGCACATTCGCCAGAAACACCCCTACTCCCTGCACTGGAGTCCCAGGGAGAAGGAAGTGATCAGCAACAGCTGGGACGCCCATCTGGGGCTGGGGGCCGGTGGTGAGGCTGAGAGCCTGGGGGCCCAGGGGGCAGAGGAGGAGGAGGAAGAAGATGAAGAGGAGGAGGAGGGGGCCAACCTGCAAGCTTGCCCACCCAAGGGCTCAG cacttgtccattggtaggtaataacaaaccctgtctgtcccccaacaaagGTCAAGCTCTTCAGCTGGAAGGGGGTGCCTTAGGGTCATGGGGGAGTACACCCCTACCCTCTTCCAGGGCCAGGGGACCCGCCTCTTCCGGAAGGAAATACTCAGATCATTGTGAGGCTCGGGCCTCGAGGCCTGGAAAGAGCCGGATCCCTGGCAGGGACCCACAGCGCTATTACCATGACCACTGGCGGCTGGAGTACTTGATGGACCTCATCCCCTCCCGGCATGGCATGGTGTGTATGGTATGTGGCAGTTCCTTGGCAACACTTAAGCTGAGCACTATCAAAAGGCACATTCGTCAGAAGCACCCCTACTCCCTGCACTGGAGTCCTAGGCAGAAGGAAGTCGTCAGCAACAGCTGGGATGCCCATGTAGGGTTGGGGGCCGGTGGTGAGGTTGAGAGCCTGGGGGCGCAGGGAGCAGAGGAGGAGGAGGAAGAAGATGAAGAGGAAGAGGAGGGGGCCAACCTGCAAGCTTGCCCACCCAAGGGCTCAGgtgagaaacatagactaccaacactgggtacaagatagtggattgcattg Alignment from Exonerate_coding2genome GGACAAGCTCTTCAGCTGGAAGGGGGTGCCTTAGGGTCCTGGGGGAGTACCCCCCTACCCTCCTCCAGGGCCAGGGGACCAGCATCTTCAGGCAGGAAATACTCAGATCATTGTGAGGCTCGGGCCTCGAGGCCTGGAAAGAGTCGCATCCCCGGCAGGGACCACCGGCGCTATTACCACGACCACTGGCGGCTGGAGTACCTGATGGACTTCATCCCCTCCCGGCATGGCATGGTGTGTATGGTGTGTGGCAGCTCCCTGGCCACCCTCAAGCTCAGCACCATCAAGAGGCACATTCGCCAGAAACACCCCTACTCCCTGCACTGGAGTCCCAGGGAGAAGGAAGTGATCAGCAACAGCTGGGACGCCCATCTGGGGCTGGGGGCCGGTGGTGAGGCTGAGAGCCTGGGGGCCCAGGGGGCAGAGGAGGAGGAGGAAGAAGATGAAGAGGAGGAGGAGGGGGCCAACCTGCAAGCTTGCCCACCCAAGGGCTCAG cacttgtccattggtaggtaataacaaaccctgtctgtcccccaacaaaGGTCAAGCTCTTCAGCTGGAAGGGGGTGCCTTAGGGTCATGGGGGAGTACACCCCTACCCTCTTCCAGGGCCAGGGGACCCGCCTCTTCCGGAAGGAAATACTCAGATCATTGTGAGGCTCGGGCCTCGAGGCCTGGAAAGAGCCGGATCCCTGGCAGGGACCCACAGCGCTATTACCATGACCACTGGCGGCTGGAGTACTTGATGGACCTCATCCCCTCCCGGCATGGCATGGTGTGTATGGTATGTGGCAGTTCCTTGGCAACACTTAAGCTGAGCACTATCAAAAGGCACATTCGTCAGAAGCACCCCTACTCCCTGCACTGGAGTCCTAGGCAGAAGGAAGTCGTCAGCAACAGCTGGGATGCCCATGTAGGGTTGGGGGCCGGTGGTGAGGTTGAGAGCCTGGGGGCGCAGGGAGCAGAGGAGGAGGAGGAAGAAGATGAAGAGGAAGAGGAGGGGGCCAACCTGCAAGCTTGCCCACCCAAGGGCTCAGgtgagaaacatagactaccaacactgggtacaagatagtggattgcattg Alignment from GeneWise GACAAGCTCTTCAGCTGGAAGGGGGTGCCTTAGGGTCCTGGGGGAGTACCCCCCTACCCTCCTCCAGGGCCAGGGGACCAGCATCTTCAGGCAGGAAATACTCAGATCATTGTGAGGCTCGGGCCTCGAGGCCTGGAAAGAGTCGCATCCCCGGCAGGGACCACCGGCGCTATTACCACGACCACTGGCGGCTGGAGTACCTGATGGACTTCATCCCCTCCCGGCATGGCATGGTGTGTATGGTGTGTGGCAGCTCCCTGGCCACCCTCAAGCTCAGCACCATCAAGAGGCACATTCGCCAGAAACACCCCTACTCCCTGCACTGGAGTCCCAGGGAGAAGGAAGTGATCAGCAACAGCTGGGACGCCCATCTGGGGCTGGGGGCCGGTGGTGAGGCTGAGAGCCTGGGGGCCCAGGGGGCAGAGGAGGAGGAGGAAGAAGATGAAGAGGAGGAGGAGGGGGCCAACCTGCAAGCTTGCCCACCCAAGGGCTCAG cacttgtccattggtaggtaataacaaaccctgtctgtcccccaacaaagGTCAAGCTCTTCAGCTGGAAGGGGGTGCCTTAGGGTCATGGGGGAGTACACCCCTACCCTCTTCCAGGGCCAGGGGACCCGCCTCTTCCGGAAGGAAATACTCAGATCATTGTGAGGCTCGGGCCTCGAGGCCTGGAAAGAGCCGGATCCCTGGCAGGGACCCACAGCGCTATTACCATGACCACTGGCGGCTGGAGTACTTGATGGACCTCATCCCCTCCCGGCATGGCATGGTGTGTATGGTATGTGGCAGTTCCTTGGCAACACTTAAGCTGAGCACTATCAAAAGGCACATTCGTCAGAAGCACCCCTACTCCCTGCACTGGAGTCCTAGGCAGAAGGAAGTCGTCAGCAACAGCTGGGATGCCCATGTAGGGTTGGGGGCCGGTGGTGAGGTTGAGAGCCTGGGGGCGCAGGGAGCAGAGGAGGAGGAGGAAGAAGATGAAGAGGAAGAGGAGGGGGCCAACCTGCAAGCTTGCCCACCCAAGGGCTCAGgtgagaaacatagactaccaacactgggtacaagatagtggattgcattg #### 2700081O15Rik_ID2154_4 --> 2 - 1 Original Alignment acGATGACCTCGTC---CCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCA---------GACGTAAAGGAAGAGGCTGGCTGGGTGCCTGAGAGGCCCGGGCCGGCGGAGGAGGAGGAGGGCGAGGGCGAGGGCGAGAGGGAGGGCATCCCGAACCGGCCTCGGAGGGGCCGAGACCATCGCCGCCACTACCAGGAGCGCTGGCGGCTGGAGTACCTCATGGAGCTGGACGGCTGCCGACGCGGCCTGGTGTGCATGGTGTGCGGGGGCGCGCTGGCCTCGCTCAAGATGAGCACCATCAAGCGACACATCCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCTGGCCCTGGGGCTGCCCAGGCCGGAGTCGCCCAGCGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGGGGAGGGGCAGAGGAGGCGGAGCCAGAGGAGGAGTGGTGGg gtgtacataactgtactttatgactttatcccccgcccaacctgggccagatGATGACTTTGTCCCCCCCCAGGAC------------------------------CCAACCGGAGCCCCATCAACACAAGATCTAAGTCCCCCAGGTCCCCCAGATGTAATGGGAGAGGTGGGTTGGATCTCGATGAGGCCTGACCCAGCAGAGGAGGAT------AAAGGTGAGAGTCAACGCGAGGGCATTCCCAAC---CCTCGGAAGGGCCGAGACCATCGATGTCACTACCAGGAGCGCTGGCGGCTAGAGTATCTCATGGAGTTGGATGGGTGCCGACGTGGCCTGGTATGCATGGTATGTGGGGGGGCCCTAGCCTCATTAGAGATGAGCACCATCAAACAGCACGTTCACCAGCGCCACTCTAGCTCCAACACTCTCAGTGGACCAGTCAAGGCTCTTGTAGCACAGGAATGGAGTGAG---GCA---TATCTC---GCATTGGGGCTTTCTAGGCCTGAGTCTCCAAGTGTCCCTGCTGCCCCCAGTACAGCCTCAGCTTCCGAAGAGGGTCGAGGAGCGGATGACGCAGAGCCAGAGGAAGAGTGGTGGggtgtcattttcacagttaggagacctcacaaaggagggtaactgagaggt Alignment from CESAR acGATGACCTCGTCCCC---CAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCA---------GACGTAAAGGAAGAGGCTGGCTGGGTGCCTGAGAGGCCCGGGCCGGCGGAGGAGGAGGAGGGCGAGGGCGAGGGCGAGAGGGAGGGCATCCCGAACCGGCCTCGGAGGGGCCGAGACCATCGCCGCCACTACCAGGAGCGCTGGCGGCTGGAGTACCTCATGGAGCTGGACGGCTGCCGACGCGGCCTGGTGTGCATGGTGTGCGGGGGCGCGCTGGCCTCGCTCAAGATGAGCACCATCAAGCGACACATCCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCTGGCCCTGGGGCTGCCCAGGCCGGAGTCGCCCAGCGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGGGGAGGGGCAGAGGAGGCGGAGCCAGAGGAGGAGTGGTGGg gtgtacataactgtactttatgactttatcccccgcccaacctgggccagatGATGACTTTGTCCCCCCCCAGGACCCAACC------------------------------GGAGCCCCATCAACACAAGATCTAAGTCCCCCAGGTCCCCCAGATGTAATGGGAGAGGTGGGTTGGATCTCGATGAGGCCTGACCCAGCAGAGGAGGAT------AAAGGTGAGAGTCAACGCGAGGGCATTCCCAAC---CCTCGGAAGGGCCGAGACCATCGATGTCACTACCAGGAGCGCTGGCGGCTAGAGTATCTCATGGAGTTGGATGGGTGCCGACGTGGCCTGGTATGCATGGTATGTGGGGGGGCCCTAGCCTCATTAGAGATGAGCACCATCAAACAGCACGTTCACCAGCGCCACTCTAGCTCCAACACTCTCAGTGGACCAGTCAAGGCTCTTGTAGCACAGGAATGGAGTGAG------GCATAT---CTCGCATTGGGGCTTTCTAGGCCTGAGTCTCCAAGTGTCCCTGCTGCCCCCAGTACAGCCTCAGCTTCCGAAGAGGGTCGAGGAGCGGATGACGCAGAGCCAGAGGAAGAGTGGTGGggtgtcattttcacagttaggagacctcacaaaggagggtaactgagaggt Alignment from Spaln_aa2Genome ACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGCTGGGTGCCTGAGAGGCCCGGGCCGGCGGAGGAGGAGGAGGGCGAGGGCGAGGGCGAGAGGGAGGGCATCCCGAACCGGCCTCGGAGGGGCCGAGACCATCGCCGCCACTACCAGGAGCGCTGGCGGCTGGAGTACCTCATGGAGCTGGACGGCTGCCGACGCGGCCTGGTGTGCATGGTGTGCGGGGGCGCGCTGGCCTCGCTCAAGATGAGCACCATCAAGCGACACATCCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCTGGCCCTGGGGCTGCCCAGGCCGGAGTCGCCCAGCGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGGGGAGGGGCAGAGGAGGCGGAGCCAGAGGAGGAGTGGTGGG gtgtacataactgtactttatgactttatcccccgcccaacctgggccagATGATGACTTTGTCCCC------------------CCCCAGGACCCA---------ACCGGAGCCCCATCAACACAAGATCTAAGTCCCCCAGGTCCCCCAGATGTAATGGGAGAGGTGGGTTGGATCTCGATGAGGCCTGACCCAGCAGAGGAGGATAAAGGTGAGAGTCAACGCGAGGGCATTCCCAACCCTCGGAAGGGCCGAGACCATCGATGTCACTACCAGGAGCGCTGGCGGCTAGAGTATCTCATGGAGTTGGATGGGTGCCGACGTGGCCTGGTATGCATGGTATGTGGGGGGGCCCTAGCCTCATTAGAGATGAGCACCATCAAACAGCACGTTCACCAGCGCCACTCTAGCTCCAACACTCTCAGTGGACCAGTCAAGGCTCTTGTAGCACAGGAATGGAGTGAG------GCATAT---CTCGCATTGGGGCTTTCTAGGCCTGAGTCTCCAAGTGTCCCTGCTGCCCCCAGTACAGCCTCAGCTTCCGAAGAGGGTCGAGGAGCGGATGACGCAGAGCCAGAGGAAGAGTGGTGGGgtgtcattttcacagttaggagacctcacaaaggagggtaactgagaggt Alignment from Spaln_nt2Genome CCCCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAG---------ACGTAAAGGAAGAGGCTGGCTGGGTGCCTGAGAGGCCCGGGCCGGCGGAGGAGGAGGAGGGCGAGGGCGAGGGCGAGAGGGAGGGCATCCCGAACCGGCCTCGGAGGGGCCGAGACCATCGCCGCCACTACCAGGAGCGCTGGCGGCTGGAGTACCTCATGGAGCTGGACGGCTGCCGACGCGGCCTGGTGTGCATGGTGTGCGGGGGCGCGCTGGCCTCGCTCAAGATGAGCACCATCAAGCGACACATCCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCTGGCCCTGGGGCTGCCCAGGCCGGAGTCGCCCAGCGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGGGGAGGGGCAGAGGAGGCGGAGCCAGAGGAGGAGTGGTGGG gtgtacataactgtactttatgactttatcccccgcccaacctgggccagatgatgactttgtccccccccagGACC--CAACCGGAGCCCCATCAACACAAGATCTAAGTCCCCCAGGTCCCCCAGATGTAATGGGAGAGGTGGGTTGGATCTCGATGAGGCCTGACCCAGCAGAGGAGGATAAAGGTGAGAGTCAACGC------GAGGGCATTCCCAAC---CCTCGGAAGGGCCGAGACCATCGATGTCACTACCAGGAGCGCTGGCGGCTAGAGTATCTCATGGAGTTGGATGGGTGCCGACGTGGCCTGGTATGCATGGTATGTGGGGGGGCCCTAGCCTCATTAGAGATGAGCACCATCAAACAGCACGTTCACCAGCGCCACTCTAGCTCCAACACTCTCAGTGGACCAGTCAAGGCTCTTGTAGCACAGGAATGGAGTGA------GGCATA---TCTCGCATTGGGGCTTTCTAGGCCTGAGTCTCCAAGTGTCCCTGCTGCCCCCAGTACAGCCTCAGCTTCCGAAGAGGGTCGAGGAGCGGATGACGCAGAGCCAGAGGAAGAGTGGTGGGgtgtcattttcacagttaggagacctcacaaaggagggtaactgagaggt Alignment from Pairagon ACGATGACCTCGT---CCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCA---------GCCCCCCAGACGTAAAGGAAGAGGCTGGCTGGGTGCCTGAGAGGCCCGGGCCGGCGGAGGAGGAGGAGGGCGAGGGCGAGGGCGAGAGGGAGGGCATCCCGAACCGGCCTCGGAGGGGCCGAGACCATCGCCGCCACTACCAGGAGCGCTGGCGGCTGGAGTACCTCATGGAGCTGGACGGCTGCCGACGCGGCCTGGTGTGCATGGTGTGCGGGGGCGCGCTGGCCTCGCTCAAGATGAGCACCATCAAGCGACACATCCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTG--------CTGGCCCTGGGGCTGCCCAGGCCGGAGTCGCCCAGCGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGGGGAGGGGCAGAGGAGGCGGAGCCAGAGGAGGAGTGGTGGG gtgtacataactgtactttatgactttatcccccgcccaacctgggccagATGATGACTTTGTCCCCCCCCAGGACCCAACC------------------------------GGAGCCCCATCAACACAAGATCTAAGTCCCCCAGGTCCCCCAGATGTAATGGGAGAGGTGGGTTGGATCTCGATGAGGCCTGACCCAGCAGAGGAGGATAAAGGTGAGAGTCAACGC------GAGGGCATTCCCAAC---CCTCGGAAGGGCCGAGACCATCGATGTCACTACCAGGAGCGCTGGCGGCTAGAGTATCTCATGGAGTTGGATGGGTGCCGACGTGGCCTGGTATGCATGGTATGTGGGGGGGCCCTAGCCTCATTAGAGATGAGCACCATCAAACAGCACGTTCACCAGCGCCACTCTAGCTCCAACACTCTCAGTGGACCAGTCAAGGCTCTTGTAGCACAGGAATGGAG-----------------TGAGGCATATCTCGCATTGGGGCTTTCTAGGCCTGAGTCTCCAAGTGTCCCTGCTGCCCCCAGTACAGCCTCAGCTTCCGAAGAGGGTCGAGGAGCGGATGACGCAGAGCCAGAGGAAGAGTGGTGGGgtgtcattttcacagttaggagacctcacaaaggagggtaactgagaggt Alignment from Exonerate_protein2genome CCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGC---------CCCCCAGACGTAAAGGAAGAGGCTGGCTGGGTGCCTGAGAGGCCCGGGCCGGCGGAGGAGGAGGAGGGCGAGGGCGAGGGCGAGAGGGAGGGCATCCCGAACCGGCCTCGGAGGGGCCGAGACCATCGCCGCCACTACCAGGAGCGCTGGCGGCTGGAGTACCTCATGGAGCTGGACGGCTGCCGACGCGGCCTGGTGTGCATGGTGTGCGGGGGCGCGCTGGCCTCGCTCAAGATGAGCACCATCAAGCGACACATCCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCTGGCCCTGGGGCTGCCCAGGCCGGAGTCGCCCAGCGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGGGGAGGGGCAGAGGAGGCGGAGCCAGAGGAGGAGTGGTGGG gtgtacataactgtactttatgactttatcccccgcccaacctgggccagatgatgactttgtccccccccagGACCCAACCGGAGCCCCATCAACACAAGATCTAAGTCCCCCAGGTCCCCCAGATGTAATGGGAGAGGTGGGTTGGATCTCGATGAGGCCTGACCCAGCAGAGGAGGAT------AAAGGTGAGAGTCAACGCGAGGGCATTCCCAAC---CCTCGGAAGGGCCGAGACCATCGATGTCACTACCAGGAGCGCTGGCGGCTAGAGTATCTCATGGAGTTGGATGGGTGCCGACGTGGCCTGGTATGCATGGTATGTGGGGGGGCCCTAGCCTCATTAGAGATGAGCACCATCAAACAGCACGTTCACCAGCGCCACTCTAGCTCCAACACTCTCAGTGGACCAGTCAAGGCTCTTGTAGCACAGGAATGGAGTGAGGCA---------TATCTCGCATTGGGGCTTTCTAGGCCTGAGTCTCCAAGTGTCCCTGCTGCCCCCAGTACAGCCTCAGCTTCCGAAGAGGGTCGAGGAGCGGATGACGCAGAGCCAGAGGAAGAGTGGTGGGgtgtcattttcacagttaggagacctcacaaaggagggtaactgagaggt Alignment from Exonerate_coding2genome CCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGC---------CCCCCAGACGTAAAGGAAGAGGCTGGCTGGGTGCCTGAGAGGCCCGGGCCGGCGGAGGAGGAGGAGGGCGAGGGCGAGGGCGAGAGGGAGGGCATCCCGAACCGGCCTCGGAGGGGCCGAGACCATCGCCGCCACTACCAGGAGCGCTGGCGGCTGGAGTACCTCATGGAGCTGGACGGCTGCCGACGCGGCCTGGTGTGCATGGTGTGCGGGGGCGCGCTGGCCTCGCTCAAGATGAGCACCATCAAGCGACACATCCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCTGGCCCTGGGGCTGCCCAGGCCGGAGTCGCCCAGCGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGGGGAGGGGCAGAGGAGGCGGAGCCAGAGGAGGAGTGGTGGG gtgtacataactgtactttatgactttatcccccgcccaacctgggccagatgatgactttgtccccccccagGACCCAACCGGAGCCCCATCAACACAAGATCTAAGTCCCCCAGGTCCCCCAGATGTAATGGGAGAGGTGGGTTGGATCTCGATGAGGCCTGACCCAGCAGAGGAGGAT------AAAGGTGAGAGTCAACGCGAGGGCATTCCCAAC---CCTCGGAAGGGCCGAGACCATCGATGTCACTACCAGGAGCGCTGGCGGCTAGAGTATCTCATGGAGTTGGATGGGTGCCGACGTGGCCTGGTATGCATGGTATGTGGGGGGGCCCTAGCCTCATTAGAGATGAGCACCATCAAACAGCACGTTCACCAGCGCCACTCTAGCTCCAACACTCTCAGTGGACCAGTCAAGGCTCTTGTAGCACAGGAATGGAGTGAGGCA---------TATCTCGCATTGGGGCTTTCTAGGCCTGAGTCTCCAAGTGTCCCTGCTGCCCCCAGTACAGCCTCAGCTTCCGAAGAGGGTCGAGGAGCGGATGACGCAGAGCCAGAGGAAGAGTGGTGGGgtgtcattttcacagttaggagacctcacaaaggagggtaactgagaggt Alignment from GeneWise ACGATGACCTCGTCCCC---CAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCA---------GACGTAAAGGAAGAGGCTGGCTGGGTGCCTGAGAGGCCCGGGCCGGCGGAGGAGGAGGAGGGCGAGGGCGAGGGCGAGAGGGAGGGCATCCCGAACCGGCCTCGGAGGGGCCGAGACCATCGCCGCCACTACCAGGAGCGCTGGCGGCTGGAGTACCTCATGGAGCTGGACGGCTGCCGACGCGGCCTGGTGTGCATGGTGTGCGGGGGCGCGCTGGCCTCGCTCAAGATGAGCACCATCAAGCGACACATCCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCTGGCCCTGGGGCTGCCCAGGCCGGAGTCGCCCAGCGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGGGGAGGGGCAGAGGAGGCGGAGCCAGAGGAGGAGTGGTGGG gtgtacataactgtactttatgactttatcccccgcccaacctgggccagATGATGACTTTGTCCCCCCCCAGGACCCAACC------------------------------GGAGCCCCATCAACACAAGATCTAAGTCCCCCAGGTCCCCCAGATGTAATGGGAGAGGTGGGTTGGATCTCGATGAGGCCTGACCCAGCAGAGGAGGATAAAGGTGAGAGTCAA------CGCGAGGGCATTCCCAAC---CCTCGGAAGGGCCGAGACCATCGATGTCACTACCAGGAGCGCTGGCGGCTAGAGTATCTCATGGAGTTGGATGGGTGCCGACGTGGCCTGGTATGCATGGTATGTGGGGGGGCCCTAGCCTCATTAGAGATGAGCACCATCAAACAGCACGTTCACCAGCGCCACTCTAGCTCCAACACTCTCAGTGGACCAGTCAAGGCTCTTGTAGCACAGGAATGGAGTGAGGCA---------TATCTCGCATTGGGGCTTTCTAGGCCTGAGTCTCCAAGTGTCCCTGCTGCCCCCAGTACAGCCTCAGCTTCCGAAGAGGGTCGAGGAGCGGATGACGCAGAGCCAGAGGAAGAGTGGTGGGgtgtcattttcacagttaggagacctcacaaaggagggtaactgagaggt #### 4430402I18Rik_ID6180_10 --> 1 - 0 Original Alignment gTTCCAGCCTTTTTCTCAGTCCACGTGGCAGAAGATCCCCGAGGGTGTACGAAGCCTTCTGACATCCCACCGAGCTCACCCAAAG tacaatctttattcaaatagttatataaaatttccactttgtttcctcagaTTCCTGCCTTTTTCCCACTCCACATGGCAGAAAATCCCTGAAGGAGTGTGTAGCCTTTTGGCACCACATCGAGCTTACCCAAGAgtgagcgggtctgctgggaatatgttctgactgataagtgcattaaacat Alignment from CESAR gTTCCAGCCTTTTTCTCAGTCCACGTGGCAGAAGATCCCCGAGGGTGTACGAAGCCTTCTGACATCCCACCGAGCTCACCCAAAG tacaatctttattcaaatagttatataaaatttccactttgtttcctcagaTTCCTGCCTTTTTCCCACTCCACATGGCAGAAAATCCCTGAAGGAGTGTGTAGCCTTTTGGCACCACATCGAGCTTACCCAAGAgtgagcgggtctgctgggaatatgttctgactgataagtgcattaaacat Alignment from Spaln_aa2Genome GTTCCAGCCTTTTTCTCAGTCCACGTGGCAGAAGATCCCCGAGGGTGTACGAAGCCTTCTGACATCCCACCGAGCTCACCCAAAG tacaatctttattcaaatagttatataaaatttccactttgtttcctcagATTCCTGCCTTTTTCCCACTCCACATGGCAGAAAATCCCTGAAGGAGTGTGTAGCCTTTTGGCACCACATCGAGCTTACCCAAGAgtgagcgggtctgctgggaatatgttctgactgataagtgcattaaacat Alignment from Spaln_nt2Genome GTTCCAGCCTTTTTCTCAGTCCACGTGGCAGAAGATCCCCGAGGGTGTACGAAGCCTTCTGACATCCCACCGAGCTCACCCAAAG tacaatctttattcaaatagttatataaaatttccactttgtttcctcagATTCCTGCCTTTTTCCCACTCCACATGGCAGAAAATCCCTGAAGGAGTGTGTAGCCTTTTGGCACCACATCGAGCTTACCCAAGAgtgagcgggtctgctgggaatatgttctgactgataagtgcattaaacat Alignment from Pairagon GTTCCAGCCTTTTTCTCAGTCCACGTGGCAGAAGATCCCCGAGGGTGTACGAAGCCTTCTGACATCCCACCGAGCTCACCCAAAG tacaatctttattcaaatagttatataaaatttccactttgtttcctcagATTCCTGCCTTTTTCCCACTCCACATGGCAGAAAATCCCTGAAGGAGTGTGTAGCCTTTTGGCACCACATCGAGCTTACCCAAGAgtgagcgggtctgctgggaatatgttctgactgataagtgcattaaacat Alignment from Exonerate_protein2genome GTTCCAGCCTTTTTCTCAGTCCACGTGGCAGAAGATCCCCGAGGGTGTACGAAGCCTTCTGACATCCCACCGAGCTCACCCAAAG tacaatctttattcaaatagttatataaaatttccactttgtttcctcagATTCCTGCCTTTTTCCCACTCCACATGGCAGAAAATCCCTGAAGGAGTGTGTAGCCTTTTGGCACCACATCGAGCTTACCCAAGAgtgagcgggtctgctgggaatatgttctgactgataagtgcattaaacat Alignment from Exonerate_coding2genome tacaatctttattcaaatagttatataaaatttccactttgtttcctcagattcctgcctttttcccactccacatggcagaaaatccctgaaggagtgtgtagccttttggcaccacatcgagcttacccaagagtgagcgggtctgctgggaatatgttctgactgataagtgcattaaacat Alignment from GeneWise GTTCCAGCCTTTTTCTCAGTCCACGTGGCAGAAGATCCCCGAGGGTGTACGAAGCCTTCTGACATCCCACCGAGCTCACCCAAAG tacaatctttattcaaatagttatataaaatttccactttgtttcctcagATTCCTGCCTTTTTCCCACTCCACATGGCAGAAAATCCCTGAAGGAGTGTGTAGCCTTTTGGCACCACATCGAGCTTACCCAAGAgtgagcgggtctgctgggaatatgttctgactgataagtgcattaaacat #### 4430402I18Rik_ID6184_6 --> 0 - 0 Original Alignment GAAGAAAGGTGTAGATTGGAAAGATCTGTCTCAAAATCTCACGGACAGAGAGTCCAGGCAACTAACAGGAAAAAGAAGCCAAAGGAAAAAGATTCTGACCAACTCCCCAAAGGGACACAGTCCCGGTTACCCTCCCCTCAACGTCTTCATCTCCATCGGCCGACTCAACGCAACCATGGGAAAAGCTTCAAGTTCCCGGGAGAAAGGAAACCTCCATTTGTGGTTAGACAT ccccccagtagtgtactctcttcatttaccttacatcttctctttttcagGAAGAGAGGTGTATTTTGGAAAGGTCAGTA------TCCCACGGACAAAGGATCCAGGCAACTAATAGGACAAAGAAACCAAAAGAAAAGGATGCGGACCAACTTCCTAAGGGAACACAG------TTACCTTCCCCTCAACATCTTTGTCTCCACCAACCCACCCAGCACAACCAGGGGAAGAGATTCAAATTTCCAGGGCAAAGGAAACCGCCCTTAGTAGTTAGACATgtgagtacaataaagagtctctgtgtgccccccactgattcctgcaagct Alignment from CESAR GAAGAAAGGTGTAGATTGGAAAGATCTGTCTCAAAATCTCACGGACAGAGAGTCCAGGCAACTAACAGGAAAAAGAAGCCAAAGGAAAAAGATTCTGACCAACTCCCCAAAGGGACACAGTCCCGGTTACCCTCCCCTCAACGTCTTCATCTCCATCGGCCGACTCAACGCAACCATGGGAAAAGCTTCAAGTTCCCGGGAGAAAGGAAACCTCCATTTGTGGTTAGACAT ccccccagtagtgtactctcttcatttaccttacatcttctctttttcagGAAGAGAGGTGTATTTTGGAAAGGTCAGTA------TCCCACGGACAAAGGATCCAGGCAACTAATAGGACAAAGAAACCAAAAGAAAAGGATGCGGACCAACTTCCTAAGGGAACACAG------TTACCTTCCCCTCAACATCTTTGTCTCCACCAACCCACCCAGCACAACCAGGGGAAGAGATTCAAATTTCCAGGGCAAAGGAAACCGCCCTTAGTAGTTAGACATgtgagtacaataaagagtctctgtgtgccccccactgattcctgcaagct Alignment from Spaln_aa2Genome GAAGAAAGGTGTAGATTGGAAAGATCTGTCTCAAAATCTCACGGACAGAGAGTCCAGGCAACTAACAGGAAAAAGAAGCCAAAGGAAAAAGATTCTGACCAACTCCCCAAAGGGACACAGTCCCGGTTACCCTCCCCTCAACGTCTTCATCTCCATCGGCCGACTCAACGCAACCATGGGAAAAGCTTCAAGTTCCCGGGAGAAAGGAAACCTCCATTTGTGGTTAGACAT ccccccagtagtgtactctcttcatttaccttacatcttctctttttcagGAAGAGAGGTGTATTTTGGAAAGGTCAGTA------TCCCACGGACAAAGGATCCAGGCAACTAATAGGACAAAGAAACCAAAAGAAAAGGATGCGGACCAACTTCCTAAGGGAACACAG------TTACCTTCCCCTCAACATCTTTGTCTCCACCAACCCACCCAGCACAACCAGGGGAAGAGATTCAAATTTCCAGGGCAAAGGAAACCGCCCTTAGTAGTTAGACATgtgagtacaataaagagtctctgtgtgccccccactgattcctgcaagct Alignment from Spaln_nt2Genome GAAGAAAGGTGTAGATTGGAAAGATCTGTCTCAAAATCTCACGGACAGAGAGTCCAGGCAACTAACAGGAAAAAGAAGCCAAAGGAAAAAGATTCTGACCAACTCCCCAAAGGGACACAGTCCCGGTTACCCTCCCCTCAACGTCTTCATCTCCATCGGCCGACTCAACGCAACCATGGGAAAAGCTTCAAGTTCCCGGGAGAAAGGAAACCTCCATTTGTGGTTAGACAT ccccccagtagtgtactctcttcatttaccttacatcttctctttttcagGAAGAGAGGTGTATTTTGGAAAGGTCAGT------ATCCCACGGACAAAGGATCCAGGCAACTAATAGGACAAAGAAACCAAAAGAAAAGGATGCGGACCAACTTCCTAAGGGAACACAGT------TACCTTCCCCTCAACATCTTTGTCTCCACCAACCCACCCAGCACAACCAGGGGAAGAGATTCAAATTTCCAGGGCAAAGGAAACCGCCCTTAGTAGTTAGACATgtgagtacaataaagagtctctgtgtgccccccactgattcctgcaagct Alignment from Pairagon GAAGAAAGGTGTAGATTGGAAAGATCTGTCTCAAAATCTCACGGACAGAGAGTCCAGGCAACTAACAGGAAAAAGAAGCCAAAGGAAAAAGATTCTGACCAACTCCCCAAAGGGACACAGTCCCGGTTACCCTCCCCTCAACGTCTTCATCTCCATCGGCCGACTCAACGCAACCATGGGAAAAGCTTCAAGTTCCCGGGAGAAAGGAAACCTCCATTTGTGGTTAGACAT ccccccagtagtgtactctcttcatttaccttacatcttctctttttcagGAAGAGAGGTGTATTTTGGAAAGGTCAGT------ATCCCACGGACAAAGGATCCAGGCAACTAATAGGACAAAGAAACCAAAAGAAAAGGATGCGGACCAACTTCCTAAGGGAACACA------GTTACCTTCCCCTCAACATCTTTGTCTCCACCAACCCACCCAGCACAACCAGGGGAAGAGATTCAAATTTCCAGGGCAAAGGAAACCGCCCTTAGTAGTTAGACATgtgagtacaataaagagtctctgtgtgccccccactgattcctgcaagct Alignment from Exonerate_protein2genome GAAGAAAGGTGTAGATTGGAAAGATCTGTCTCAAAATCTCACGGACAGAGAGTCCAGGCAACTAACAGGAAAAAGAAGCCAAAGGAAAAAGATTCTGACCAACTCCCCAAAGGGACACAGTCCCGGTTACCCTCCCCTCAACGTCTTCATCTCCATCGGCCGACTCAACGCAACCATGGGAAAAGCTTCAAGTTCCCGGGAGAAAGGAAACCTCCATTTGTGGTTAGACATGTGGACAGTGGGAACCCATTTGGT ccccccagtagtgtactctcttcatttaccttacatcttctctttttcagGAAGAGAGGTGTATTTTGGAAAGGTCAGTA------TCCCACGGACAAAGGATCCAGGCAACTAATAGGACAAAGAAACCAAAAGAAAAGGATGCGGACCAACTTCCTAAGGGAACACAG------TTACCTTCCCCTCAACATCTTTGTCTCCACCAACCCACCCAGCACAACCAGGGGAAGAGATTCAAATTTCCAGGGCAAAGGAAACCGCCCTTAGTAGTTAGACATGTGAGTACAATAAAGAGTCTCTGTgtgccccccactgattcctgcaagct Alignment from Exonerate_coding2genome GAAGAAAGGTGTAGATTGGAAAGATCTGTCTCAAAATCTCACGGACAGAGAGTCCAGGCAACTAACAGGAAAAAGAAGCCAAAGGAAAAAGATTCTGACCAACTCCCCAAAGGGACACAGTCCCGGTTACCCTCCCCTCAACGTCTTCATCTCCATCGGCCGACTCAACGCAACCATGGGAAAAGCTTCAAGTTCCCGGGAGAAAGGAAACCTCCATTTGTGGTTAGACAT ccccccagtagtgtactctcttcatttaccttacatcttctctttttcagGAAGAGAGGTGTATTTTGGAAAGGTCAGTA------TCCCACGGACAAAGGATCCAGGCAACTAATAGGACAAAGAAACCAAAAGAAAAGGATGCGGACCAACTTCCTAAGGGAACACAG------TTACCTTCCCCTCAACATCTTTGTCTCCACCAACCCACCCAGCACAACCAGGGGAAGAGATTCAAATTTCCAGGGCAAAGGAAACCGCCCTTAGTAGTTAGACATgtgagtacaataaagagtctctgtgtgccccccactgattcctgcaagct Alignment from GeneWise GAAGAAAGGTGTAGATTGGAAAGATCTGTCTCAAAATCTCACGGACAGAGAGTCCAGGCAACTAACAGGAAAAAGAAGCCAAAGGAAAAAGATTCTGACCAACTCCCCAAAGGGACACAGTCCCGGTTACCCTCCCCTCAACGTCTTCATCTCCATCGGCCGACTCAACGCAACCATGGGAAAAGCTTCAAGTTCCCGGGAGAAAGGAAACCTCCATTTGTGGTTAGACAT ccccccagtagtgtactctcttcatttaccttacatcttctctttttcagGAAGAGAGGTGTATTTTGGAAAGGTCAGTATCC------CACGGACAAAGGATCCAGGCAACTAATAGGACAAAGAAACCAAAAGAAAAGGATGCGGACCAACTTCCTAAGGGAACACAG------TTACCTTCCCCTCAACATCTTTGTCTCCACCAACCCACCCAGCACAACCAGGGGAAGAGATTCAAATTTCCAGGGCAAAGGAAACCGCCCTTAGTAGTTAGACATgtgagtacaataaagagtctctgtgtgccccccactgattcctgcaagct #### 4430402I18Rik_ID6187_3 --> 2 - 1 Original Alignment gcTTCCTAACCAGGTTTGAATTAGTACAGCTAGTGTCTCCAg gtgtcttggaaggaacattagacagaagcctcttaacaatccctatacaggtTTTCTGACAAGCTTTGAATTAGTACAACTAGTGTCTCCAggtaagttgtgaaaatacacagttgtggataataggcaagcctatgaatgc Alignment from CESAR gcTTCCTAACCAGGTTTGAATTAGTACAGCTAGTGTCTCCAg gtgtcttggaaggaacattagacagaagcctcttaacaatccctatacaggtTTTCTGACAAGCTTTGAATTAGTACAACTAGTGTCTCCAggtaagttgtgaaaatacacagttgtggataataggcaagcctatgaatgc Alignment from Spaln_aa2Genome GCTTCCTAACCAGGTTTGAATTAGTACAGCTAGTGTCTCCAG gtgtcttggaaggaacattagacagaagcctcttaacaatccctatacagGTTTTCTGACAAGCTTTGAATTAGTACAACTAGTGTCTCCAGgtaagttgtgaaaatacacagttgtggataataggcaagcctatgaatgc Alignment from Spaln_nt2Genome GCTTCCTAACCAGGTTTGAATTAGTACAGCTAGTGTCTCCAG gtgtcttggaaggaacattagacagaagcctcttaacaatccctatacagGTTTTCTGACAAGCTTTGAATTAGTACAACTAGTGTCTCCAGgtaagttgtgaaaatacacagttgtggataataggcaagcctatgaatgc Alignment from Pairagon GCTTCCTAACCAGGTTTGAATTAGTACAGCTAGTGTCTCCAG gtgtcttggaaggaacattagacagaagcctcttaacaatccctatacagGTTTTCTGACAAGCTTTGAATTAGTACAACTAGTGTCTCCAGgtaagttgtgaaaatacacagttgtggataataggcaagcctatgaatgc Alignment from Exonerate_protein2genome GCTTCCTAACCAGGTTTGAATTAGTACAGCTAGTGTCTCCAG gtgtcttggaaggaacattagacagaagcctcttaacaatccctatacagGTTTTCTGACAAGCTTTGAATTAGTACAACTAGTGTCTCCAGgtaagttgtgaaaatacacagttgtggataataggcaagcctatgaatgc Alignment from Exonerate_coding2genome GCTTCCTAACCAGGTTTGAATTAGTACAGCTAGTGTCTCCAG gtgtcttggaaggaacattagacagaagcctcttaacaatccctatacagGTTTTCTGACAAGCTTTGAATTAGTACAACTAGTGTCTCCAGgtaagttgtgaaaatacacagttgtggataataggcaagcctatgaatgc Alignment from GeneWise GCTTCCTAACCAGGTTTGAATTAGTACAGCTAGTGTCTCCAG gtgtcttggaaggaacattagacagaagcctcttaacaatccctatacagGTTTTCTGACAAGCTTTGAATTAGTACAACTAGTGTCTCCAGgtaagttgtgaaaatacacagttgtggataataggcaagcctatgaatgc #### 4930506M07Rik_ID12856_15 --> 0 - 1 Original Alignment GGGACACTTAACAAATCCACTAGTTCGAGAAGCTTAAAATCCCTTGGCCCTGAGAACAGTGAAACTGAGTTAGAGAGGATTTTACGTCGCAGAAAGCTGACGGCAGAAGCAGATAGCAGTa tggcatcagaagaatactttcattcttatttctgtttctgtcatgcacagGGGACACTTAATAAATCTACCAGTTCAAGAAGTTTAAAATCAATTGGCCCTGAGAACAGTGAGACTGAATTAGAGAGGATATTACATTGCAGAAAGCTCACTGCAGAAGCAGACAGCAGTagtaggtgtttattgaagtccaaacttttctattgtggtacttcttctaca Alignment from CESAR GGGACACTTAACAAATCCACTAGTTCGAGAAGCTTAAAATCCCTTGGCCCTGAGAACAGTGAAACTGAGTTAGAGAGGATTTTACGTCGCAGAAAGCTGACGGCAGAAGCAGATAGCAGTa tggcatcagaagaatactttcattcttatttctgtttctgtcatgcacagGGGACACTTAATAAATCTACCAGTTCAAGAAGTTTAAAATCAATTGGCCCTGAGAACAGTGAGACTGAATTAGAGAGGATATTACATTGCAGAAAGCTCACTGCAGAAGCAGACAGCAGTagtaggtgtttattgaagtccaaacttttctattgtggtacttcttctaca Alignment from Spaln_aa2Genome GGGACACTTAACAAATCCACTAGTTCGAGAAGCTTAAAATCCCTTGGCCCTGAGAACAGTGAAACTGAGTTAGAGAGGATTTTACGTCGCAGAAAGCTGACGGCAGAAGCAGATAGCAGTA tggcatcagaagaatactttcattcttatttctgtttctgtcatgcacagGGGACACTTAATAAATCTACCAGTTCAAGAAGTTTAAAATCAATTGGCCCTGAGAACAGTGAGACTGAATTAGAGAGGATATTACATTGCAGAAAGCTCACTGCAGAAGCAGACAGCAGTAgtaggtgtttattgaagtccaaacttttctattgtggtacttcttctaca Alignment from Spaln_nt2Genome GGGACACTTAACAAATCCACTAGTTCGAGAAGCTTAAAATCCCTTGGCCCTGAGAACAGTGAAACTGAGTTAGAGAGGATTTTACGTCGCAGAAAGCTGACGGCAGAAGCAGATAGCAGTA tggcatcagaagaatactttcattcttatttctgtttctgtcatgcacagGGGACACTTAATAAATCTACCAGTTCAAGAAGTTTAAAATCAATTGGCCCTGAGAACAGTGAGACTGAATTAGAGAGGATATTACATTGCAGAAAGCTCACTGCAGAAGCAGACAGCAGTAgtaggtgtttattgaagtccaaacttttctattgtggtacttcttctaca Alignment from Pairagon GGGACACTTAACAAATCCACTAGTTCGAGAAGCTTAAAATCCCTTGGCCCTGAGAACAGTGAAACTGAGTTAGAGAGGATTTTACGTCGCAGAAAGCTGACGGCAGAAGCAGATAGCAGTA tggcatcagaagaatactttcattcttatttctgtttctgtcatgcacagGGGACACTTAATAAATCTACCAGTTCAAGAAGTTTAAAATCAATTGGCCCTGAGAACAGTGAGACTGAATTAGAGAGGATATTACATTGCAGAAAGCTCACTGCAGAAGCAGACAGCAGTAgtaggtgtttattgaagtccaaacttttctattgtggtacttcttctaca Alignment from Exonerate_protein2genome GGGACACTTAACAAATCCACTAGTTCGAGAAGCTTAAAATCCCTTGGCCCTGAGAACAGTGAAACTGAGTTAGAGAGGATTTTACGTCGCAGAAAGCTGACGGCAGAAGCAGATAGCAGTA tggcatcagaagaatactttcattcttatttctgtttctgtcatgcacagGGGACACTTAATAAATCTACCAGTTCAAGAAGTTTAAAATCAATTGGCCCTGAGAACAGTGAGACTGAATTAGAGAGGATATTACATTGCAGAAAGCTCACTGCAGAAGCAGACAGCAGTAgtaggtgtttattgaagtccaaacttttctattgtggtacttcttctaca Alignment from Exonerate_coding2genome GGGACACTTAACAAATCCACTAGTTCGAGAAGCTTAAAATCCCTTGGCCCTGAGAACAGTGAAACTGAGTTAGAGAGGATTTTACGTCGCAGAAAGCTGACGGCAGAAGCAGATAGCAGTA tggcatcagaagaatactttcattcttatttctgtttctgtcatgcacagGGGACACTTAATAAATCTACCAGTTCAAGAAGTTTAAAATCAATTGGCCCTGAGAACAGTGAGACTGAATTAGAGAGGATATTACATTGCAGAAAGCTCACTGCAGAAGCAGACAGCAGTAgtaggtgtttattgaagtccaaacttttctattgtggtacttcttctaca Alignment from GeneWise GGGACACTTAACAAATCCACTAGTTCGAGAAGCTTAAAATCCCTTGGCCCTGAGAACAGTGAAACTGAGTTAGAGAGGATTTTACGTCGCAGAAAGCTGACGGCAGAAGCAGATAGCAGTA tggcatcagaagaatactttcattcttatttctgtttctgtcatgcacagGGGACACTTAATAAATCTACCAGTTCAAGAAGTTTAAAATCAATTGGCCCTGAGAACAGTGAGACTGAATTAGAGAGGATATTACATTGCAGAAAGCTCACTGCAGAAGCAGACAGCAGTAgtaggtgtttattgaagtccaaacttttctattgtggtacttcttctaca #### 4930506M07Rik_ID12864_11 --> 2 - 2 Original Alignment tgGATGAACTTCAGAAGCGAGTGAACCAGTCTGAGAATTCGGTACCTCCCCCGCCTCCTCCTCCTCCACCTCTCCCCCCTCCACCTCCCAATCCAATCcg taaactgtccttattgtagggagtattacattgcttccccaatactccagtgGATGAACTCCATAAACGAGTGAACCAATCTGAGAAATCAGTGCCTCCACCACCACCTCCTCTGCCACCCCTTCCTCCCCCACCACCCAATCCAATCcggtatgttgcactcctacactcttagtaccctcataacctgtatgatatta Alignment from CESAR tgGATGAACTTCAGAAGCGAGTGAACCAGTCTGAGAATTCGGTACCTCCCCCGCCTCCTCCTCCTCCACCTCTCCCCCCTCCACCTCCCAATCCAATCcg taaactgtccttattgtagggagtattacattgcttccccaatactccagtgGATGAACTCCATAAACGAGTGAACCAATCTGAGAAATCAGTGCCTCCACCACCACCTCCTCTGCCACCCCTTCCTCCCCCACCACCCAATCCAATCcggtatgttgcactcctacactcttagtaccctcataacctgtatgatatta Alignment from Spaln_aa2Genome TGGATGAACTTCAGAAGCGAGTGAACCAGTCTGAGAATTCGGTACCTCCCCCGCCTCCTCCTCCTCCACCTCTCCCCCCTCCACCTCCCAATCCAATCCG taaactgtccttattgtagggagtattacattgcttccccaatactccagTGGATGAACTCCATAAACGAGTGAACCAATCTGAGAAATCAGTGCCTCCACCACCACCTCCTCTGCCACCCCTTCCTCCCCCACCACCCAATCCAATCCGgtatgttgcactcctacactcttagtaccctcataacctgtatgatatta Alignment from Spaln_nt2Genome TGGATGAACTTCAGAAGCGAGTGAACCAGTCTGAGAATTCGGTACCTCCCCCGCCTCCTCCTCCTCCACCTCTCCCCCCTCCACCTCCCAATCCAATCCG taaactgtccttattgtagggagtattacattgcttccccaatactccagTGGATGAACTCCATAAACGAGTGAACCAATCTGAGAAATCAGTGCCTCCACCACCACCTCCTCTGCCACCCCTTCCTCCCCCACCACCCAATCCAATCCGgtatgttgcactcctacactcttagtaccctcataacctgtatgatatta Alignment from Pairagon TGGATGAACTTCAGAAGCGAGTGAACCAGTCTGAGAATTCGGTACCTCCCCCGCCTCCTCCTCCTCCACCTCTCCCCCCTCCACCTCCCAATCCAATCCG taaactgtccttattgtagggagtattacattgcttccccaatactccagTGGATGAACTCCATAAACGAGTGAACCAATCTGAGAAATCAGTGCCTCCACCACCACCTCCTCTGCCACCCCTTCCTCCCCCACCACCCAATCCAATCCGgtatgttgcactcctacactcttagtaccctcataacctgtatgatatta Alignment from Exonerate_protein2genome TGGATGAACTTCAGAAGCGAGTGAACCAGTCTGAGAATTCGGTACCTCCCCCGCCTCCTCCTCCTCCACCTCTCCCCCCTCCACCTCCCAATCCAATCCG taaactgtccttattgtagggagtattacattgcttccccaatactccagTGGATGAACTCCATAAACGAGTGAACCAATCTGAGAAATCAGTGCCTCCACCACCACCTCCTCTGCCACCCCTTCCTCCCCCACCACCCAATCCAATCCGgtatgttgcactcctacactcttagtaccctcataacctgtatgatatta Alignment from Exonerate_coding2genome TGGATGAACTTCAGAAGCGAGTGAACCAGTCTGAGAATTCGGTACCTCCCCCGCCTCCTCCTCCTCCACCTCTCCCCCCTCCACCTCCCAATCCAATCCG taaactgtccttattgtagggagtattacattgcttccccaatactccagTGGATGAACTCCATAAACGAGTGAACCAATCTGAGAAATCAGTGCCTCCACCACCACCTCCTCTGCCACCCCTTCCTCCCCCACCACCCAATCCAATCCGgtatgttgcactcctacactcttagtaccctcataacctgtatgatatta Alignment from GeneWise TGGATGAACTTCAGAAGCGAGTGAACCAGTCTGAGAATTCGGTACCTCCCCCGCCTCCTCCTCCTCCACCTCTCCCCCCTCCACCTCCCAATCCAATCCG taaactgtccttattgtagggagtattacattgcttccccaatactccagTGGATGAACTCCATAAACGAGTGAACCAATCTGAGAAATCAGTGCCTCCACCACCACCTCCTCTGCCACCCCTTCCTCCCCCACCACCCAATCCAATCCGgtatgttgcactcctacactcttagtaccctcataacctgtatgatatta #### 4930506M07Rik_ID12873_5 --> 0 - 1 Original Alignment CTAAATAAAGAAAATAAAACACTGAAAAGAATCAGCATGCTATACATGGCCAAACTGGGGCCAGACGTAATTACAGAGGAGATAAACATTGATGATGATGACCCAGCCACCGACACAGATGCTGCGGCTGAGACCTGTGTGTCTGTTCAGTGTCAGAAGCAAATCAAAg aattctagtataagtctttttctctcctcccccatctctctctcccacagCTCAATAAGCAAAACAAAACCTTAAAAAGCATAAGTATGTTGTATATGGCCAAACTTGGACCTGATGTAGTTACAGTAGAGATAAATATTGATGATGATGACCCTGCT---GACACAGATGCTGCTGCTGAGACCTTTGTGTCTGTTCAGTGCCAAAAGCACATTAAAggtaatcctcctgcattttaagcaaattagtcttcacctttgatgctcagg Alignment from CESAR CTAAATAAAGAAAATAAAACACTGAAAAGAATCAGCATGCTATACATGGCCAAACTGGGGCCAGACGTAATTACAGAGGAGATAAACATTGATGATGATGACCCAGCCACCGACACAGATGCTGCGGCTGAGACCTGTGTGTCTGTTCAGTGTCAGAAGCAAATCAAAg aattctagtataagtctttttctctcctcccccatctctctctcccacagCTCAATAAGCAAAACAAAACCTTAAAAAGCATAAGTATGTTGTATATGGCCAAACTTGGACCTGATGTAGTTACAGTAGAGATAAATATTGATGATGATGACCCTGCT---GACACAGATGCTGCTGCTGAGACCTTTGTGTCTGTTCAGTGCCAAAAGCACATTAAAggtaatcctcctgcattttaagcaaattagtcttcacctttgatgctcagg Alignment from Spaln_aa2Genome CTAAATAAAGAAAATAAAACACTGAAAAGAATCAGCATGCTATACATGGCCAAACTGGGGCCAGACGTAATTACAGAGGAGATAAACATTGATGATGATGACCCAGCCACCGACACAGATGCTGCGGCTGAGACCTGTGTGTCTGTTCAGTGTCAGAAGCAAATCAAAG aattctagtataagtctttttctctcctcccccatctctctctcccacagCTCAATAAGCAAAACAAAACCTTAAAAAGCATAAGTATGTTGTATATGGCCAAACTTGGACCTGATGTAGTTACAGTAGAGATAAATATTGATGATGATGACCCTGCT---GACACAGATGCTGCTGCTGAGACCTTTGTGTCTGTTCAGTGCCAAAAGCACATTAAAGgtaatcctcctgcattttaagcaaattagtcttcacctttgatgctcagg Alignment from Spaln_nt2Genome CTAAATAAAGAAAATAAAACACTGAAAAGAATCAGCATGCTATACATGGCCAAACTGGGGCCAGACGTAATTACAGAGGAGATAAACATTGATGATGATGACCCAGCCACCGACACAGATGCTGCGGCTGAGACCTGTGTGTCTGTTCAGTGTCAGAAGCAAATCAAAG aattctagtataagtctttttctctcctcccccatctctctctcccacagCTCAATAAGCAAAACAAAACCTTAAAAAGCATAAGTATGTTGTATATGGCCAAACTTGGACCTGATGTAGTTACAGTAGAGATAAATATTGATGATGATGACCCTG---CTGACACAGATGCTGCTGCTGAGACCTTTGTGTCTGTTCAGTGCCAAAAGCACATTAAAGgtaatcctcctgcattttaagcaaattagtcttcacctttgatgctcagg Alignment from Pairagon CTAAATAAAGAAAATAAAACACTGAAAAGAATCAGCATGCTATACATGGCCAAACTGGGGCCAGACGTAATTACAGAGGAGATAAACATTGATGATGATGACCCAGCCACCGACACAGATGCTGCGGCTGAGACCTGTGTGTCTGTTCAGTGTCAGAAGCAAATCAAAG aattctagtataagtctttttctctcctcccccatctctctctcccacagCTCAATAAGCAAAACAAAACCTTAAAAAGCATAAGTATGTTGTATATGGCCAAACTTGGACCTGATGTAGTTACAGTAGAGATAAATATTGATGATGATGACCCTG---CTGACACAGATGCTGCTGCTGAGACCTTTGTGTCTGTTCAGTGCCAAAAGCACATTAAAGgtaatcctcctgcattttaagcaaattagtcttcacctttgatgctcagg Alignment from Exonerate_protein2genome CTAAATAAAGAAAATAAAACACTGAAAAGAATCAGCATGCTATACATGGCCAAACTGGGGCCAGACGTAATTACAGAGGAGATAAACATTGATGATGATGACCCAGCCACCGACACAGATGCTGCGGCTGAGACCTGTGTGTCTGTTCAGTGTCAGAAGCAAATCAAAG aattctagtataagtctttttctctcctcccccatctctctctcccacagCTCAATAAGCAAAACAAAACCTTAAAAAGCATAAGTATGTTGTATATGGCCAAACTTGGACCTGATGTAGTTACAGTAGAGATAAATATTGATGATGATGACCCTGCT---GACACAGATGCTGCTGCTGAGACCTTTGTGTCTGTTCAGTGCCAAAAGCACATTAAAGgtaatcctcctgcattttaagcaaattagtcttcacctttgatgctcagg Alignment from Exonerate_coding2genome CTAAATAAAGAAAATAAAACACTGAAAAGAATCAGCATGCTATACATGGCCAAACTGGGGCCAGACGTAATTACAGAGGAGATAAACATTGATGATGATGACCCAGCCACCGACACAGATGCTGCGGCTGAGACCTGTGTGTCTGTTCAGTGTCAGAAGCAAATCAAAG aattctagtataagtctttttctctcctcccccatctctctctcccacagCTCAATAAGCAAAACAAAACCTTAAAAAGCATAAGTATGTTGTATATGGCCAAACTTGGACCTGATGTAGTTACAGTAGAGATAAATATTGATGATGATGACCCTGCT---GACACAGATGCTGCTGCTGAGACCTTTGTGTCTGTTCAGTGCCAAAAGCACATTAAAGgtaatcctcctgcattttaagcaaattagtcttcacctttgatgctcagg Alignment from GeneWise CTAAATAAAGAAAATAAAACACTGAAAAGAATCAGCATGCTATACATGGCCAAACTGGGGCCAGACGTAATTACAGAGGAGATAAACATTGATGATGATGACCCAGCCACCGACACAGATGCTGCGGCTGAGACCTGTGTGTCTGTTCAGTGTCAGAAGCAAATCAAAG aattctagtataagtctttttctctcctcccccatctctctctcccacagCTCAATAAGCAAAACAAAACCTTAAAAAGCATAAGTATGTTGTATATGGCCAAACTTGGACCTGATGTAGTTACAGTAGAGATAAATATTGATGATGATGACCCTGCT---GACACAGATGCTGCTGCTGAGACCTTTGTGTCTGTTCAGTGCCAAAAGCACATTAAAGgtaatcctcctgcattttaagcaaattagtcttcacctttgatgctcagg #### 9130011E15Rik_ID9640_21 --> 0 - 1 Original Alignment ATTGTGAACCTATTTAACATGTTTATCACATACGGTGACACATTCCTGCCAACCCCCAGCAGCTACGATGAGCTTTACTATGAAATTATCCGCATGCACCAGAGCTTTGACAACCTCTACTCCATGg aaactatggcctctcttgtagcccaactaaaaccttttttttttttaaagATTGTGAACCTATTTAATATGTTCATCACATATGGTGACACATTCCTGCCAACCCCCGGCAGCTATGATGAGCTTTATTATGAAATCATCTGCATGCACCAGAGCTTTGACAACGTCTACTCCATGggtaagcctgttcttaggatagtggggtaccttaggtacaggggttagagg Alignment from CESAR ATTGTGAACCTATTTAACATGTTTATCACATACGGTGACACATTCCTGCCAACCCCCAGCAGCTACGATGAGCTTTACTATGAAATTATCCGCATGCACCAGAGCTTTGACAACCTCTACTCCATGg aaactatggcctctcttgtagcccaactaaaaccttttttttttttaaagATTGTGAACCTATTTAATATGTTCATCACATATGGTGACACATTCCTGCCAACCCCCGGCAGCTATGATGAGCTTTATTATGAAATCATCTGCATGCACCAGAGCTTTGACAACGTCTACTCCATGggtaagcctgttcttaggatagtggggtaccttaggtacaggggttagagg Alignment from Spaln_aa2Genome ATTGTGAACCTATTTAACATGTTTATCACATACGGTGACACATTCCTGCCAACCCCCAGCAGCTACGATGAGCTTTACTATGAAATTATCCGCATGCACCAGAGCTTTGACAACCTCTACTCCATGG aaactatggcctctcttgtagcccaactaaaaccttttttttttttaaagATTGTGAACCTATTTAATATGTTCATCACATATGGTGACACATTCCTGCCAACCCCCGGCAGCTATGATGAGCTTTATTATGAAATCATCTGCATGCACCAGAGCTTTGACAACGTCTACTCCATGGgtaagcctgttcttaggatagtggggtaccttaggtacaggggttagagg Alignment from Spaln_nt2Genome ATTGTGAACCTATTTAACATGTTTATCACATACGGTGACACATTCCTGCCAACCCCCAGCAGCTACGATGAGCTTTACTATGAAATTATCCGCATGCACCAGAGCTTTGACAACCTCTACTCCATGG aaactatggcctctcttgtagcccaactaaaaccttttttttttttaaagATTGTGAACCTATTTAATATGTTCATCACATATGGTGACACATTCCTGCCAACCCCCGGCAGCTATGATGAGCTTTATTATGAAATCATCTGCATGCACCAGAGCTTTGACAACGTCTACTCCATGGgtaagcctgttcttaggatagtggggtaccttaggtacaggggttagagg Alignment from Pairagon ATTGTGAACCTATTTAACATGTTTATCACATACGGTGACACATTCCTGCCAACCCCCAGCAGCTACGATGAGCTTTACTATGAAATTATCCGCATGCACCAGAGCTTTGACAACCTCTACTCCATGG aaactatggcctctcttgtagcccaactaaaaccttttttttttttaaagATTGTGAACCTATTTAATATGTTCATCACATATGGTGACACATTCCTGCCAACCCCCGGCAGCTATGATGAGCTTTATTATGAAATCATCTGCATGCACCAGAGCTTTGACAACGTCTACTCCATGGgtaagcctgttcttaggatagtggggtaccttaggtacaggggttagagg Alignment from Exonerate_protein2genome ATTGTGAACCTATTTAACATGTTTATCACATACGGTGACACATTCCTGCCAACCCCCAGCAGCTACGATGAGCTTTACTATGAAATTATCCGCATGCACCAGAGCTTTGACAACCTCTACTCCATGG aaactatggcctctcttgtagcccaactaaaaccttttttttttttaaagATTGTGAACCTATTTAATATGTTCATCACATATGGTGACACATTCCTGCCAACCCCCGGCAGCTATGATGAGCTTTATTATGAAATCATCTGCATGCACCAGAGCTTTGACAACGTCTACTCCATGGgtaagcctgttcttaggatagtggggtaccttaggtacaggggttagagg Alignment from Exonerate_coding2genome aaactatggcctctcttgtagcccaactaaaaccttttttttttttaaagattgtgaacctatttaatatgttcatcacatatggtgacacattcctgccaacccccggcagctatgatgagctttattatgaaatcatctgcatgcaccagagctttgacaacgtctactccatgggtaagcctgttcttaggatagtggggtaccttaggtacaggggttagagg Alignment from GeneWise ATTGTGAACCTATTTAACATGTTTATCACATACGGTGACACATTCCTGCCAACCCCCAGCAGCTACGATGAGCTTTACTATGAAATTATCCGCATGCACCAGAGCTTTGACAACCTCTACTCCATGG aaactatggcctctcttgtagcccaactaaaaccttttttttttttaaagATTGTGAACCTATTTAATATGTTCATCACATATGGTGACACATTCCTGCCAACCCCCGGCAGCTATGATGAGCTTTATTATGAAATCATCTGCATGCACCAGAGCTTTGACAACGTCTACTCCATGGgtaagcctgttcttaggatagtggggtaccttaggtacaggggttagagg #### 9130011E15Rik_ID9663_13 --> 0 - 1 Original Alignment AGCCATCCAGAAATGGGGTTGGTGACAGCCCCTGCCAGCCCTACTCCTACAACCCCAGCCACACCCCTTGGGACTACACCGCCCTCCTCTGACg gttgcttgtaagcagacctcatggttttaggccctccttgtgtcttgcagAGCCATCCTAAGATGGGCCTAGTGACAGCTTCTGCAAGTCCTACTCCTACAACTCCAGCTACCCCCCTTGGAACTACTCCCCCACCCTCTGATggtgagcattaaagaatgtctctgactatggaaatgtattttggtaccatt Alignment from CESAR AGCCATCCAGAAATGGGGTTGGTGACAGCCCCTGCCAGCCCTACTCCTACAACCCCAGCCACACCCCTTGGGACTACACCGCCCTCCTCTGACg gttgcttgtaagcagacctcatggttttaggccctccttgtgtcttgcagAGCCATCCTAAGATGGGCCTAGTGACAGCTTCTGCAAGTCCTACTCCTACAACTCCAGCTACCCCCCTTGGAACTACTCCCCCACCCTCTGATggtgagcattaaagaatgtctctgactatggaaatgtattttggtaccatt Alignment from Spaln_aa2Genome AGCCATCCAGAAATGGGGTTGGTGACAGCCCCTGCCAGCCCTACTCCTACAACCCCAGCCACACCCCTTGGGACTACACCGCCCTCCTCTGACG gttgcttgtaagcagacctcatggttttaggccctccttgtgtcttgcagAGCCATCCTAAGATGGGCCTAGTGACAGCTTCTGCAAGTCCTACTCCTACAACTCCAGCTACCCCCCTTGGAACTACTCCCCCACCCTCTGATGgtgagcattaaagaatgtctctgactatggaaatgtattttggtaccatt Alignment from Spaln_nt2Genome AGCCATCCAGAAATGGGGTTGGTGACAGCCCCTGCCAGCCCTACTCCTACAACCCCAGCCACACCCCTTGGGACTACACCGCCCTCCTCTGACG gttgcttgtaagcagacctcatggttttaggccctccttgtgtcttgcagAGCCATCCTAAGATGGGCCTAGTGACAGCTTCTGCAAGTCCTACTCCTACAACTCCAGCTACCCCCCTTGGAACTACTCCCCCACCCTCTGATGgtgagcattaaagaatgtctctgactatggaaatgtattttggtaccatt Alignment from Pairagon AGCCATCCAGAAATGGGGTTGGTGACAGCCCCTGCCAGCCCTACTCCTACAACCCCAGCCACACCCCTTGGGACTACACCGCCCTCCTCTGACG gttgcttgtaagcagacctcatggttttaggccctccttgtgtcttgcagAGCCATCCTAAGATGGGCCTAGTGACAGCTTCTGCAAGTCCTACTCCTACAACTCCAGCTACCCCCCTTGGAACTACTCCCCCACCCTCTGATGgtgagcattaaagaatgtctctgactatggaaatgtattttggtaccatt Alignment from Exonerate_protein2genome AGCCATCCAGAAATGGGGTTGGTGACAGCCCCTGCCAGCCCTACTCCTACAACCCCAGCCACACCCCTTGGGACTACACCGCCCTCCTCTGACG gttgcttgtaagcagacctcatggttttaggccctccttgtgtcttgcagAGCCATCCTAAGATGGGCCTAGTGACAGCTTCTGCAAGTCCTACTCCTACAACTCCAGCTACCCCCCTTGGAACTACTCCCCCACCCTCTGATGgtgagcattaaagaatgtctctgactatggaaatgtattttggtaccatt Alignment from Exonerate_coding2genome AGCCATCCAGAAATGGGGTTGGTGACAGCCCCTGCCAGCCCTACTCCTACAACCCCAGCCACACCCCTTGGGACTACACCGCCCTCCTCTGACG gttgcttgtaagcagacctcatggttttaggccctccttgtgtcttgcagAGCCATCCTAAGATGGGCCTAGTGACAGCTTCTGCAAGTCCTACTCCTACAACTCCAGCTACCCCCCTTGGAACTACTCCCCCACCCTCTGATGgtgagcattaaagaatgtctctgactatggaaatgtattttggtaccatt Alignment from GeneWise AGCCATCCAGAAATGGGGTTGGTGACAGCCCCTGCCAGCCCTACTCCTACAACCCCAGCCACACCCCTTGGGACTACACCGCCCTCCTCTGACG gttgcttgtaagcagacctcatggttttaggccctccttgtgtcttgcagAGCCATCCTAAGATGGGCCTAGTGACAGCTTCTGCAAGTCCTACTCCTACAACTCCAGCTACCCCCCTTGGAACTACTCCCCCACCCTCTGATGgtgagcattaaagaatgtctctgactatggaaatgtattttggtaccatt #### 9130011E15Rik_ID9669_9 --> 0 - 2 Original Alignment GGAATGGGGCTTGTGATCACTCAGGCTTTATCTGAGTACAACag gccctaatagtgcttaccttagagccaaccaactacttccacctcaccagGGAATGGGACTTGTGATTACTCAGTCTTTGTCTGAGTATAATaggtaaggttgccacactaatccagaacagatgggcccattagtgggcccat Alignment from CESAR GGAATGGGGCTTGTGATCACTCAGGCTTTATCTGAGTACAACag gccctaatagtgcttaccttagagccaaccaactacttccacctcaccagGGAATGGGACTTGTGATTACTCAGTCTTTGTCTGAGTATAATaggtaaggttgccacactaatccagaacagatgggcccattagtgggcccat Alignment from Spaln_aa2Genome GGAATGGGGCTTGTGATCACTCAGGCTTTATCTGAGTACAACAG gccctaatagtgcttaccttagagccaaccaactacttccacctcaccagGGAATGGGACTTGTGATTACTCAGTCTTTGTCTGAGTATAATAGgtaaggttgccacactaatccagaacagatgggcccattagtgggcccat Alignment from Spaln_nt2Genome GGAATGGGGCTTGTGATCACTCAGGCTTTATCTGAGTACAACAG gccctaatagtgcttaccttagagccaaccaactacttccacctcaccagGGAATGGGACTTGTGATTACTCAGTCTTTGTCTGAGTATAATAGgtaaggttgccacactaatccagaacagatgggcccattagtgggcccat Alignment from Pairagon GGAATGGGGCTTGTGATCACTCAGGCTTTATCTGAGTACAACAG gccctaatagtgcttaccttagagccaaccaactacttccacctcaccagGGAATGGGACTTGTGATTACTCAGTCTTTGTCTGAGTATAATAGgtaaggttgccacactaatccagaacagatgggcccattagtgggcccat Alignment from Exonerate_protein2genome GGAATGGGGCTTGTGATCACTCAGGCTTTATCTGAGTACAACAG gccctaatagtgcttaccttagagccaaccaactacttccacctcaccagGGAATGGGACTTGTGATTACTCAGTCTTTGTCTGAGTATAATAGgtaaggttgccacactaatccagaacagatgggcccattagtgggcccat Alignment from Exonerate_coding2genome gccctaatagtgcttaccttagagccaaccaactacttccacctcaccagggaatgggacttgtgattactcagtctttgtctgagtataataggtaaggttgccacactaatccagaacagatgggcccattagtgggcccat Alignment from GeneWise GGAATGGGGCTTGTGATCACTCAGGCTTTATCTGAGTACAACAG gccctaatagtgcttaccttagagccaaccaactacttccacctcaccagGGAATGGGACTTGTGATTACTCAGTCTTTGTCTGAGTATAATAGgtaaggttgccacactaatccagaacagatgggcccattagtgggcccat #### A1cf_ID6647_8 --> 2 - 0 Original Alignment aaATTTACATGAATGTCCCTGTAGGGGCTGCGGGGGTGAGAGGACTGGGCGGCCGTGGGTATTTGGCATACACAGGCCTGGGTCGAGGATACCACGTCAAAGGAGACAAGAGAGAAGACAAACTCTATGATCTTCTGCCTGGGATGGAGCTCACCCCGATGAATACTGTCTCTTTAAAACCACAAGGAATTAAACTTGCTCCTCAG tgattgtctgagtgtttcaggtttcttccgatcgttttaaacattctcagaaATTCATATGAACGTTCCTATAGGGGCAGCTGGGGTGAGAGGA---CATGGTCGTGATTATCTCGCTCTCACAGGCCTGGGCCGAGGCTAT---GTAAAAGGAGACAAAAGGGAAGATAAACTCTTTGATCTTCTCCCTGGCATGGAACTGACTGTGATGAATACTGTTACTGTGGTACTACAAGGCATTAAGCTTGTACCCCAGgtatgttaatgattccactcattgttaaatggggccccccaaataggccc Alignment from CESAR aaATTTACATGAATGTCCCTGTAGGGGCTGCGGGGGTGAGAGGACTGGGCGGCCGTGGGTATTTGGCATACACAGGCCTGGGTCGAGGATACCACGTCAAAGGAGACAAGAGAGAAGACAAACTCTATGATCTTCTGCCTGGGATGGAGCTCACCCCGATGAATACTGTCTCTTTAAAACCACAAGGAATTAAACTTGCTCCTCAG tgattgtctgagtgtttcaggtttcttccgatcgttttaaacattctcagaaATTCATATGAACGTTCCTATAGGGGCAGCTGGGGTGAGAGGACAT---GGTCGTGATTATCTCGCTCTCACAGGCCTGGGCCGAGGCTAT---GTAAAAGGAGACAAAAGGGAAGATAAACTCTTTGATCTTCTCCCTGGCATGGAACTGACTGTGATGAATACTGTTACTGTGGTACTACAAGGCATTAAGCTTGTACCCCAGgtatgttaatgattccactcattgttaaatggggccccccaaataggccc Alignment from Spaln_aa2Genome AAATTTACATGAATGTCCCTGTAGGGGCTGCGGGGGTGAGAGGACTGGGCGGCCGTGGGTATTTGGCATACACAGGCCTGGGTCGAGGATACCACGTCAAAGGAGACAAGAGAGAAGACAAACTCTATGATCTTCTGCCTGGGATGGAGCTCACCCCGATGAATACTGTCTCTTTAAAACCACAAGGAATTAAACTTGCTCCTCAG tgattgtctgagtgtttcaggtttcttccgatcgttttaaacattctcagAAATTCATATGAACGTTCCTATAGGGGCAGCTGGGGTGAGAGGACAT---GGTCGTGATTATCTCGCTCTCACAGGCCTGGGCCGAGGCTAT---GTAAAAGGAGACAAAAGGGAAGATAAACTCTTTGATCTTCTCCCTGGCATGGAACTGACTGTGATGAATACTGTTACTGTGGTACTACAAGGCATTAAGCTTGTACCCCAGgtatgttaatgattccactcattgttaaatggggccccccaaataggccc Alignment from Spaln_nt2Genome AAATTTACATGAATGTCCCTGTAGGGGCTGCGGGGGTGAGAGGACTGGGCGGCCGTGGGTATTTGGCATACACAGGCCTGGGTCGAGGATACCACGTCAAAGGAGACAAGAGAGAAGACAAACTCTATGATCTTCTGCCTGGGATGGAGCTCACCCCGATGAATACTGTCTCTTTAAAACCACAAGGAATTAAACTTGCTCCTCAG tgattgtctgagtgtttcaggtttcttccgatcgttttaaacattctcagAAATTCATATGAACGTTCCTATAGGGGCAGCTGGGGTGAGAGGAC---ATGGTCGTGATTATCTCGCTCTCACAGGCCTGGGCCGAGG---CTATGTAAAAGGAGACAAAAGGGAAGATAAACTCTTTGATCTTCTCCCTGGCATGGAACTGACTGTGATGAATACTGTTACTGTGGTACTACAAGGCATTAAGCTTGTACCCCAGgtatgttaatgattccactcattgttaaatggggccccccaaataggccc Alignment from Pairagon AAATTTACATGAATGTCCCTGTAGGGGCTGCGGGGGTGAGAGGACTGGGCGGCCGTGGGTATTTGGCATACACAGGCCTGGGTCGAGGATACCACGTCAAAGGAGACAAGAGAGAAGACAAACTCTATGATCTTCTGCCTGGGATGGAGCTCACCCCGATGAATACTGTCTCTTTAAAACCACAAGGAATTAAACTTGCTCCTCAG tgattgtctgagtgtttcaggtttcttccgatcgttttaaacattctcagAAATTCATATGAACGTTCCTATAGGGGCAGCTGGGGTGAGAGGAC---ATGGTCGTGATTATCTCGCTCTCACAGGCCTGGGCCGAGG---CTATGTAAAAGGAGACAAAAGGGAAGATAAACTCTTTGATCTTCTCCCTGGCATGGAACTGACTGTGATGAATACTGTTACTGTGGTACTACAAGGCATTAAGCTTGTACCCCAGgtatgttaatgattccactcattgttaaatggggccccccaaataggccc Alignment from Exonerate_protein2genome AAATTTACATGAATGTCCCTGTAGGGGCTGCGGGGGTGAGAGGACTGGGCGGCCGTGGGTATTTGGCATACACAGGCCTGGGTCGAGGATACCACGTCAAAGGAGACAAGAGAGAAGACAAACTCTATGATCTTCTGCCTGGGATGGAGCTCACCCCGATGAATACTGTCTCTTTAAAACCACAAGGAATTAAACTTGCTCCTCAG tgattgtctgagtgtttcaggtttcttccgatcgttttaaacattctcagAAATTCATATGAACGTTCCTATAGGGGCAGCTGGGGTGAGAGGA---CATGGTCGTGATTATCTCGCTCTCACAGGCCTGGGCCGAGGCTAT---GTAAAAGGAGACAAAAGGGAAGATAAACTCTTTGATCTTCTCCCTGGCATGGAACTGACTGTGATGAATACTGTTACTGTGGTACTACAAGGCATTAAGCTTGTACCCCAGgtatgttaatgattccactcattgttaaatggggccccccaaataggccc Alignment from Exonerate_coding2genome AAATTTACATGAATGTCCCTGTAGGGGCTGCGGGGGTGAGAGGACTGGGCGGCCGTGGGTATTTGGCATACACAGGCCTGGGTCGAGGATACCACGTCAAAGGAGACAAGAGAGAAGACAAACTCTATGATCTTCTGCCTGGGATGGAGCTCACCCCGATGAATACTGTCTCTTTAAAACCACAAGGAATTAAACTTGCTCCTCAG tgattgtctgagtgtttcaggtttcttccgatcgttttaaacattctcagAAATTCATATGAACGTTCCTATAGGGGCAGCTGGGGTGAGAGGA---CATGGTCGTGATTATCTCGCTCTCACAGGCCTGGGCCGAGGCTAT---GTAAAAGGAGACAAAAGGGAAGATAAACTCTTTGATCTTCTCCCTGGCATGGAACTGACTGTGATGAATACTGTTACTGTGGTACTACAAGGCATTAAGCTTGTACCCCAGgtatgttaatgattccactcattgttaaatggggccccccaaataggccc Alignment from GeneWise AAATTTACATGAATGTCCCTGTAGGGGCTGCGGGGGTGAGAGGACTGGGCGGCCGTGGGTATTTGGCATACACAGGCCTGGGTCGAGGATACCACGTCAAAGGAGACAAGAGAGAAGACAAACTCTATGATCTTCTGCCTGGGATGGAGCTCACCCCGATGAATACTGTCTCTTTAAAACCACAAGGAATTAAACTTGCTCCTCAG tgattgtctgagtgtttcaggtttcttccgatcgttttaaacattctcagAAATTCATATGAACGTTCCTATAGGGGCAGCTGGGGTGAGAGGA---CATGGTCGTGATTATCTCGCTCTCACAGGCCTGGGCCGAGGCTAT---GTAAAAGGAGACAAAAGGGAAGATAAACTCTTTGATCTTCTCCCTGGCATGGAACTGACTGTGATGAATACTGTTACTGTGGTACTACAAGGCATTAAGCTTGTACCCCAGgtatgttaatgattccactcattgttaaatggggccccccaaataggccc #### A630007B06Rik_ID12188_9 --> 0 - 2 Original Alignment GCGAAATGTCTAGAAGATGAACGCTTAAGAACGGAAGATGAGTTATCAAAGTACAGGGAAATTATCAATCGACAGAAATCTGAAATTCAGAATTTACTGGACAAGGTGAAAATCACAGATCAGTTACATGAGCAGCTTCAAag gtatctaacaggggtacagacaaggaatatatcccctctcccacccacagGCAAAATGTCTGGAAGACGAACGATTAAGGACAGAAGATGAGTTATCAAAATACCGGGAAATTATTAATCGACAGAGGTCCGAAATACAGAATTTACTAGACAAGGTGAAAATCACTGATCAGTTACATGAGCAGCTTCAAaggtaaatggtaagtctccatattatgtcatatcatattgtattgttcagcc Alignment from CESAR GCGAAATGTCTAGAAGATGAACGCTTAAGAACGGAAGATGAGTTATCAAAGTACAGGGAAATTATCAATCGACAGAAATCTGAAATTCAGAATTTACTGGACAAGGTGAAAATCACAGATCAGTTACATGAGCAGCTTCAAag gtatctaacaggggtacagacaaggaatatatcccctctcccacccacagGCAAAATGTCTGGAAGACGAACGATTAAGGACAGAAGATGAGTTATCAAAATACCGGGAAATTATTAATCGACAGAGGTCCGAAATACAGAATTTACTAGACAAGGTGAAAATCACTGATCAGTTACATGAGCAGCTTCAAaggtaaatggtaagtctccatattatgtcatatcatattgtattgttcagcc Alignment from Spaln_aa2Genome GCGAAATGTCTAGAAGATGAACGCTTAAGAACGGAAGATGAGTTATCAAAGTACAGGGAAATTATCAATCGACAGAAATCTGAAATTCAGAATTTACTGGACAAGGTGAAAATCACAGATCAGTTACATGAGCAGCTTCAAAG gtatctaacaggggtacagacaaggaatatatcccctctcccacccacagGCAAAATGTCTGGAAGACGAACGATTAAGGACAGAAGATGAGTTATCAAAATACCGGGAAATTATTAATCGACAGAGGTCCGAAATACAGAATTTACTAGACAAGGTGAAAATCACTGATCAGTTACATGAGCAGCTTCAAAGgtaaatggtaagtctccatattatgtcatatcatattgtattgttcagcc Alignment from Spaln_nt2Genome GCGAAATGTCTAGAAGATGAACGCTTAAGAACGGAAGATGAGTTATCAAAGTACAGGGAAATTATCAATCGACAGAAATCTGAAATTCAGAATTTACTGGACAAGGTGAAAATCACAGATCAGTTACATGAGCAGCTTCAAAG gtatctaacaggggtacagacaaggaatatatcccctctcccacccacagGCAAAATGTCTGGAAGACGAACGATTAAGGACAGAAGATGAGTTATCAAAATACCGGGAAATTATTAATCGACAGAGGTCCGAAATACAGAATTTACTAGACAAGGTGAAAATCACTGATCAGTTACATGAGCAGCTTCAAAGgtaaatggtaagtctccatattatgtcatatcatattgtattgttcagcc Alignment from Pairagon GCGAAATGTCTAGAAGATGAACGCTTAAGAACGGAAGATGAGTTATCAAAGTACAGGGAAATTATCAATCGACAGAAATCTGAAATTCAGAATTTACTGGACAAGGTGAAAATCACAGATCAGTTACATGAGCAGCTTCAAAG gtatctaacaggggtacagacaaggaatatatcccctctcccacccacagGCAAAATGTCTGGAAGACGAACGATTAAGGACAGAAGATGAGTTATCAAAATACCGGGAAATTATTAATCGACAGAGGTCCGAAATACAGAATTTACTAGACAAGGTGAAAATCACTGATCAGTTACATGAGCAGCTTCAAAGgtaaatggtaagtctccatattatgtcatatcatattgtattgttcagcc Alignment from Exonerate_protein2genome GCGAAATGTCTAGAAGATGAACGCTTAAGAACGGAAGATGAGTTATCAAAGTACAGGGAAATTATCAATCGACAGAAATCTGAAATTCAGAATTTACTGGACAAGGTGAAAATCACAGATCAGTTACATGAGCAGCTTCAAAG gtatctaacaggggtacagacaaggaatatatcccctctcccacccacagGCAAAATGTCTGGAAGACGAACGATTAAGGACAGAAGATGAGTTATCAAAATACCGGGAAATTATTAATCGACAGAGGTCCGAAATACAGAATTTACTAGACAAGGTGAAAATCACTGATCAGTTACATGAGCAGCTTCAAAGgtaaatggtaagtctccatattatgtcatatcatattgtattgttcagcc Alignment from Exonerate_coding2genome GCGAAATGTCTAGAAGATGAACGCTTAAGAACGGAAGATGAGTTATCAAAGTACAGGGAAATTATCAATCGACAGAAATCTGAAATTCAGAATTTACTGGACAAGGTGAAAATCACAGATCAGTTACATGAGCAGCTTCAAAG gtatctaacaggggtacagacaaggaatatatcccctctcccacccacagGCAAAATGTCTGGAAGACGAACGATTAAGGACAGAAGATGAGTTATCAAAATACCGGGAAATTATTAATCGACAGAGGTCCGAAATACAGAATTTACTAGACAAGGTGAAAATCACTGATCAGTTACATGAGCAGCTTCAAAGgtaaatggtaagtctccatattatgtcatatcatattgtattgttcagcc Alignment from GeneWise GCGAAATGTCTAGAAGATGAACGCTTAAGAACGGAAGATGAGTTATCAAAGTACAGGGAAATTATCAATCGACAGAAATCTGAAATTCAGAATTTACTGGACAAGGTGAAAATCACAGATCAGTTACATGAGCAGCTTCAAAG gtatctaacaggggtacagacaaggaatatatcccctctcccacccacagGCAAAATGTCTGGAAGACGAACGATTAAGGACAGAAGATGAGTTATCAAAATACCGGGAAATTATTAATCGACAGAGGTCCGAAATACAGAATTTACTAGACAAGGTGAAAATCACTGATCAGTTACATGAGCAGCTTCAAAGgtaaatggtaagtctccatattatgtcatatcatattgtattgttcagcc #### A630007B06Rik_ID12190_7 --> 0 - 0 Original Alignment GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG catgggtgtgttagatggcaaggtacaaccatacctccctcgatgtctagGAATCAGAAGAAATCAAGTCAAATGAGCCTGATACGAAACTCAGAGTGACAAAAGGCGAACTTGAAAAACAAATGCGAGAAAAATCTGACCAGCTGGAAgtaggttataattgtcctacctagcataagacactccttctgatggggct Alignment from CESAR GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG catgggtgtgttagatggcaaggtacaaccatacctccctcgatgtctagGAATCAGAAGAAATCAAGTCAAATGAGCCTGATACGAAACTCAGAGTGACAAAAGGCGAACTTGAAAAACAAATGCGAGAAAAATCTGACCAGCTGGAAgtaggttataattgtcctacctagcataagacactccttctgatggggct Alignment from Spaln_aa2Genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG catgggtgtgttagatggcaaggtacaaccatacctccctcgatgtctagGAATCAGAAGAAATCAAGTCAAATGAGCCTGATACGAAACTCAGAGTGACAAAAGGCGAACTTGAAAAACAAATGCGAGAAAAATCTGACCAGCTGGAAgtaggttataattgtcctacctagcataagacactccttctgatggggct Alignment from Spaln_nt2Genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG catgggtgtgttagatggcaaggtacaaccatacctccctcgatgtctagGAATCAGAAGAAATCAAGTCAAATGAGCCTGATACGAAACTCAGAGTGACAAAAGGCGAACTTGAAAAACAAATGCGAGAAAAATCTGACCAGCTGGAAgtaggttataattgtcctacctagcataagacactccttctgatggggct Alignment from Pairagon GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG catgggtgtgttagatggcaaggtacaaccatacctccctcgatgtctagGAATCAGAAGAAATCAAGTCAAATGAGCCTGATACGAAACTCAGAGTGACAAAAGGCGAACTTGAAAAACAAATGCGAGAAAAATCTGACCAGCTGGAAgtaggttataattgtcctacctagcataagacactccttctgatggggct Alignment from Exonerate_protein2genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG catgggtgtgttagatggcaaggtacaaccatacctccctcgatgtctagGAATCAGAAGAAATCAAGTCAAATGAGCCTGATACGAAACTCAGAGTGACAAAAGGCGAACTTGAAAAACAAATGCGAGAAAAATCTGACCAGCTGGAAgtaggttataattgtcctacctagcataagacactccttctgatggggct Alignment from Exonerate_coding2genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG catgggtgtgttagatggcaaggtacaaccatacctccctcgatgtctagGAATCAGAAGAAATCAAGTCAAATGAGCCTGATACGAAACTCAGAGTGACAAAAGGCGAACTTGAAAAACAAATGCGAGAAAAATCTGACCAGCTGGAAgtaggttataattgtcctacctagcataagacactccttctgatggggct Alignment from GeneWise GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG catgggtgtgttagatggcaaggtacaaccatacctccctcgatgtctagGAATCAGAAGAAATCAAGTCAAATGAGCCTGATACGAAACTCAGAGTGACAAAAGGCGAACTTGAAAAACAAATGCGAGAAAAATCTGACCAGCTGGAAgtaggttataattgtcctacctagcataagacactccttctgatggggct #### A630007B06Rik_ID12192_5 --> 0 - 0 Original Alignment GAAGGTGAAACAACTAGACTCATCAGAGAAATAGAGAAATTAAAGGAGGAGATGAATTCTCAAGTCATTAAAGTAAAGTGGGCGCAAAACAAGTTAAAAGCTGAAATGGACTCACACAAG gcagtgcacccattcagcgcaaggtgctcctgccgtgccccctctttcagGAAGGCGAAATAACTAGACTCATTAGAGAGATAGAGAAATTGAAAGAAGAG---AATTCTCAAGTCATAAAAGTAAAATGGGCACAGAACATATTAAAA---------GAGTCCCATAAAgtgaggtaagtagtcgaacatgtccagcagcttctacagaacactcccca Alignment from CESAR GAAGGTGAAACAACTAGACTCATCAGAGAAATAGAGAAATTAAAGGAGGAGATGAATTCTCAAGTCATTAAAGTAAAGTGGGCGCAAAACAAGTTAAAAGCTGAAATGGACTCACACAAG gcagtgcacccattcagcgcaaggtgctcctgccgtgccccctctttcagGAAGGCGAAATAACTAGACTCATTAGAGAGATAGAGAAATTGAAAGAAGAG---AATTCTCAAGTCATAAAAGTAAAATGGGCACAGAACATATTAAAA---------GAGTCCCATAAAgtgaggtaagtagtcgaacatgtccagcagcttctacagaacactcccca Alignment from Spaln_aa2Genome GAAGGTGAAACAACTAGACTCATCAGAGAAATAGAGAAATTAAAGGAGGAGATGAATTCTCAAGTCATTAAAGTAAAGTGGGCGCAAAACAAGTTAAAAGCTGAAATGGACTCACACAAG gcagtgcacccattcagcgcaaggtgctcctgccgtgccccctctttcagGAAGGCGAAATAACTAGACTCATTAGAGAGATAGAGAAATTGAAAGAAGAG---AATTCTCAAGTCATAAAAGTAAAATGGGCACAGAACATATTAAAA---------GAGTCCCATAAAgtgaggtaagtagtcgaacatgtccagcagcttctacagaacactcccca Alignment from Spaln_nt2Genome GAAGGTGAAACAACTAGACTCATCAGAGAAATAGAGAAATTAAAGGAGGAGATGAATTCTCAAGTCATTAAAGTAAAGTGGGCGCAAAACAAGTTAAAAGC-TGAAATGGACTCAC gcagtgcacccattcagcgcaaggtgctcctgccgtgccccctctttcagGAAGGCGAAATAACTAGACTCATTAGAGAGATAGAGAAATTGAAAGAAGA---GAATTCTCAAGTCATAAAAGTAAAATGGGCACAGAACATATTAAAAGAGTCCCATAAAGTGAGgtaagtagtcgaacatgtccagcagcttctacagaacactcccca Alignment from Pairagon GAAGGTGAAACAACTAGACTCATCAGAGAAATAGAGAAATTAAAGGAGGAGATGAATTCTCAAGTCATTAAAGTAAAGTGGGCGCAAAACAAGTTAAAAGCTGAAATGGACTCACACAAG gcagtgcacccattcagcgcaaggtgctcctgccgtgccccctctttcagGAAGGCGAAATAACTAGACTCATTAGAGAGATAGAGAAATTGAAAGAAGA---GAATTCTCAAGTCATAAAAGTAAAATGGGCACAGAACATATTAAAA---------GAGTCCCATAAAgtgaggtaagtagtcgaacatgtccagcagcttctacagaacactcccca Alignment from Exonerate_protein2genome GAAGGTGAAACAACTAGACTCATCAGAGAAATAGAGAAATTAAAGGAGGAGATGAATTCTCAAGTCATTAAAGTAAAGTGGGCGCAAAACAAGTTAAAAGCTGAAATGGACTCACA gcagtgcacccattcagcgcaaggtgctcctgccgtgccccctctttcagGAAGGCGAAATAACTAGACTCATTAGAGAGATAGAGAAATTGAAAGAAGAG---AATTCTCAAGTCATAAAAGTAAAATGGGCACAGAACATATTAAAAGAGTCCCATAAAGTGAGgtaagtagtcgaacatgtccagcagcttctacagaacactcccca Alignment from Exonerate_coding2genome GAAGGTGAAACAACTAGACTCATCAGAGAAATAGAGAAATTAAAGGAGGAGATGAATTCTCAAGTCATTAAAGTAAAGTGGGCGCAAAACAAGTTAAAAGCTGAAATGGACTCACA gcagtgcacccattcagcgcaaggtgctcctgccgtgccccctctttcagGAAGGCGAAATAACTAGACTCATTAGAGAGATAGAGAAATTGAAAGAAGAG---AATTCTCAAGTCATAAAAGTAAAATGGGCACAGAACATATTAAAAGAGTCCCATAAAGTGAGgtaagtagtcgaacatgtccagcagcttctacagaacactcccca Alignment from GeneWise GAAGGTGAAACAACTAGACTCATCAGAGAAATAGAGAAATTAAAGGAGGAGATGAATTCTCAAGTCATTAAAGTAAAGTGGGCGCAAAACAAGTTAAAAGCTGAAATGGACTCACACAAG gcagtgcacccattcagcgcaaggtgctcctgccgtgccccctctttcagGAAGGCGAAATAACTAGACTCATTAGAGAGATAGAGAAATTGAAAGAAGAG---AATTCTCAAGTCATAAAAGTAAAATGGGCACAGAACATATTAAAA---------GAGTCCCATAAAgtgaggtaagtagtcgaacatgtccagcagcttctacagaacactcccca #### AI846148_ID2141_5 --> 2 - 1 Original Alignment acCCCCCGTCTCCTGAGTCACCCACAGAGACATTCGCAGCACCAGCTGAAGTCCGACACTTCACTGATGGCAGCTTCCCTCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGACAGCAGAGCAGCAGAGGGCCTGCCCCAGCCACAAAACCCCTCTTCAg cttatttggacatacagaaacatgctttaactctactctttcttttttagatCCCCCATCCCCA---GCACCAACAGAGACATTTGCTGCACCCACAGAAGTCCAACAC---ACTGATGGTTGCTTCCCC------TTTGTTCTTCAGCTATTCTCTCAT---CAGTTGCGAACCACTGACTGTAAGGATGCTACTGAGGAAAGTCGAGTTGCAGAGGGATTACTTCTGCCACAAAACAGCTCACTAggtaaagccccctagagggaaagccaatcaatagttaaaggggcatgtgta Alignment from CESAR acCCCCCGTCTCCTGAGTCACCCACAGAGACATTCGCAGCACCAGCTGAAGTCCGACACTTCACTGATGGCAGCTTCCCTCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGACAGCAGAGCAGCAGAGGGCCTGCCCCAGCCACAAAACCCCTCTTCAg cttatttggacatacagaaacatgctttaactctactctttcttttttagatCCCCCATCCCCA---GCACCAACAGAGACATTTGCTGCACCCACAGAAGTCCAACAC---ACTGATGGTTGCTTCCCC------TTTGTTCTTCAGCTATTCTCTCAT---CAGTTGCGAACCACTGACTGTAAGGATGCTACTGAGGAAAGTCGAGTTGCAGAGGGATTACTTCTGCCACAAAACAGCTCACTAggtaaagccccctagagggaaagccaatcaatagttaaaggggcatgtgta Alignment from Spaln_aa2Genome ACCCCCCGTCTCCTGAGTCACCCACAGAGACATTCGCAGCACCAGCTGAAGTCCGACACTTCACTGATGGCAGCTTCCCTCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGACAGCAGAGCAGCAGAGGGCCTGCCCCAGCCACAAAACCCCTCTTCAG cttatttggacatacagaaacatgctttaactctactctttcttttttagATCCCCCATCCCCA---GCACCAACAGAGACATTTGCTGCACCCACAGAAGTCCAACAC---ACTGATGGTTGCTTCCCC------TTTGTTCTTCAGCTATTCTCTCAT---CAGTTGCGAACCACTGACTGTAAGGATGCTACTGAGGAAAGTCGAGTTGCAGAGGGATTACTTCTGCCACAAAACAGCTCACTAGgtaaagccccctagagggaaagccaatcaatagttaaaggggcatgtgta Alignment from Spaln_nt2Genome ACCCCCCGTCTCCTGAGTCACCCACAGAGACATTCGCAGCACCAGCTGAAGTCCGACACTTCACTGATGGCAGCTTCCCTCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGACAGCAGAGCAGCAGAGGGCCTGCCCCAGCCACAAAACCCCTCTTCAG cttatttggacatacagaaacatgctttaactctactctttcttttttagATCCCCCATCCCCAG---CACCAACAGAGACATTTGCTGCACCCACAGAAGTCCAACA---CACTGATGGTTGCTTCCC------CTTTGTTCTTCAGCTATTCTCTCA---TCAGTTGCGAACCACTGACTGTAAGGATGCTACTGAGGAAAGTCGAGTTGCAGAGGGATTACTTCTGCCACAAAACAGCTCACTAGgtaaagccccctagagggaaagccaatcaatagttaaaggggcatgtgta Alignment from Pairagon ACCCCCCGTCTCCTGAGTCACCCACAGAGACATTCGCAGCACCAGCTGAAGTCCGACACTTCACTGATGGCAGCTTCCCTCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGACAGCAGAGCAGCAGAGGGCCTGCCCCAGCCACAAAACCCCTCTTCAG cttatttggacatacagaaacatgctttaactctactctttcttttttagATCCCCCATCCCCAG---CACCAACAGAGACATTTGCTGCACCCACAGAAGTCCAACA---CACTGATGGTTGCTTCCC------CTTTGTTCTTCAGCTATTCTCTCA---TCAGTTGCGAACCACTGACTGTAAGGATGCTACTGAGGAAAGTCGAGTTGCAGAGGGATTACTTCTGCCACAAAACAGCTCACTAGgtaaagccccctagagggaaagccaatcaatagttaaaggggcatgtgta Alignment from Exonerate_protein2genome ACCCCCCGTCTCCTGAGTCACCCACAGAGACATTCGCAGCACCAGCTGAAGTCCGACACTTCACTGATGGCAGCTTCCCTCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGACAGCAGAGCAGCAGAGGGCCTGCCCCAGCCACAAAACCCCTCTTCAG cttatttggacatacagaaacatgctttaactctactctttcttttttagATCCCCCATCCCCA---GCACCAACAGAGACATTTGCTGCACCCACAGAAGTCCAACAC---ACTGATGGTTGCTTCCCC------TTTGTTCTTCAGCTATTCTCTCAT---CAGTTGCGAACCACTGACTGTAAGGATGCTACTGAGGAAAGTCGAGTTGCAGAGGGATTACTTCTGCCACAAAACAGCTCACTAGgtaaagccccctagagggaaagccaatcaatagttaaaggggcatgtgta Alignment from Exonerate_coding2genome ACCCCCCGTCTCCTGAGTCACCCACAGAGACATTCGCAGCACCAGCTGAAGTCCGACACTTCACTGATGGCAGCTTCCCTCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGACAGCAGAGCAGCAGAGGGCCTGCCCCAGCCACAAAACCCCTCTTCAG cttatttggacatacagaaacatgctttaactctactctttcttttttagATCCCCCATCCCCA---GCACCAACAGAGACATTTGCTGCACCCACAGAAGTCCAACAC---ACTGATGGTTGCTTCCCC------TTTGTTCTTCAGCTATTCTCTCAT---CAGTTGCGAACCACTGACTGTAAGGATGCTACTGAGGAAAGTCGAGTTGCAGAGGGATTACTTCTGCCACAAAACAGCTCACTAGgtaaagccccctagagggaaagccaatcaatagttaaaggggcatgtgta Alignment from GeneWise ACCCCCCGTCTCCTGAGTCACCCACAGAGACATTCGCAGCACCAGCTGAAGTCCGACACTTCACTGATGGCAGCTTCCCTCCTGGCTTCGTCCTCCAGCTCTTCTCCCACACTCAGCTCAGGACCACTGACTGTAAGGACTCTTCTAAGGACAGCAGAGCAGCAGAGGGCCTGCCCCAGCCACAAAACCCCTCTTCAG cttatttggacatacagaaacatgctttaactctactctttcttttttagATCCCCCATCCCCA---GCACCAACAGAGACATTTGCTGCACCCACAGAAGTCCAACAC---ACTGATGGTTGCTTCCCC------TTTGTTCTTCAGCTATTCTCTCAT---CAGTTGCGAACCACTGACTGTAAGGATGCTACTGAGGAAAGTCGAGTTGCAGAGGGATTACTTCTGCCACAAAACAGCTCACTAGgtaaagccccctagagggaaagccaatcaatagttaaaggggcatgtgta #### AI846148_ID2142_4 --> 2 - 1 Original Alignment ttACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAg aaacaagtggagagaattctgtaggagctgaattccggtctcctctccagttACTCCAGTTATAGAGCAAGGGAACAAAAAGCCCCGTGGCCAAAGATGGAAAGAGTCCCTTGAGAATAAACCAGCTAGAAAGAAGAGAAGCAGGCATATGACTAAGATCTTGGACCCTGATCCAggtaaccgagcactaggggtaagagctgcaaaaatcactcaagacttacaa Alignment from CESAR ttACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAg aaacaagtggagagaattctgtaggagctgaattccggtctcctctccagttACTCCAGTTATAGAGCAAGGGAACAAAAAGCCCCGTGGCCAAAGATGGAAAGAGTCCCTTGAGAATAAACCAGCTAGAAAGAAGAGAAGCAGGCATATGACTAAGATCTTGGACCCTGATCCAggtaaccgagcactaggggtaagagctgcaaaaatcactcaagacttacaa Alignment from Spaln_aa2Genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aaacaagtggagagaattctgtaggagctgaattccggtctcctctccagTTACTCCAGTTATAGAGCAAGGGAACAAAAAGCCCCGTGGCCAAAGATGGAAAGAGTCCCTTGAGAATAAACCAGCTAGAAAGAAGAGAAGCAGGCATATGACTAAGATCTTGGACCCTGATCCAGgtaaccgagcactaggggtaagagctgcaaaaatcactcaagacttacaa Alignment from Spaln_nt2Genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aaacaagtggagagaattctgtaggagctgaattccggtctcctctccagTTACTCCAGTTATAGAGCAAGGGAACAAAAAGCCCCGTGGCCAAAGATGGAAAGAGTCCCTTGAGAATAAACCAGCTAGAAAGAAGAGAAGCAGGCATATGACTAAGATCTTGGACCCTGATCCAGgtaaccgagcactaggggtaagagctgcaaaaatcactcaagacttacaa Alignment from Pairagon TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aaacaagtggagagaattctgtaggagctgaattccggtctcctctccagTTACTCCAGTTATAGAGCAAGGGAACAAAAAGCCCCGTGGCCAAAGATGGAAAGAGTCCCTTGAGAATAAACCAGCTAGAAAGAAGAGAAGCAGGCATATGACTAAGATCTTGGACCCTGATCCAGgtaaccgagcactaggggtaagagctgcaaaaatcactcaagacttacaa Alignment from Exonerate_protein2genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aaacaagtggagagaattctgtaggagctgaattccggtctcctctccagTTACTCCAGTTATAGAGCAAGGGAACAAAAAGCCCCGTGGCCAAAGATGGAAAGAGTCCCTTGAGAATAAACCAGCTAGAAAGAAGAGAAGCAGGCATATGACTAAGATCTTGGACCCTGATCCAGgtaaccgagcactaggggtaagagctgcaaaaatcactcaagacttacaa Alignment from Exonerate_coding2genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aaacaagtggagagaattctgtaggagctgaattccggtctcctctccagTTACTCCAGTTATAGAGCAAGGGAACAAAAAGCCCCGTGGCCAAAGATGGAAAGAGTCCCTTGAGAATAAACCAGCTAGAAAGAAGAGAAGCAGGCATATGACTAAGATCTTGGACCCTGATCCAGgtaaccgagcactaggggtaagagctgcaaaaatcactcaagacttacaa Alignment from GeneWise TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aaacaagtggagagaattctgtaggagctgaattccggtctcctctccagTTACTCCAGTTATAGAGCAAGGGAACAAAAAGCCCCGTGGCCAAAGATGGAAAGAGTCCCTTGAGAATAAACCAGCTAGAAAGAAGAGAAGCAGGCATATGACTAAGATCTTGGACCCTGATCCAGgtaaccgagcactaggggtaagagctgcaaaaatcactcaagacttacaa #### AI846148_ID2143_3 --> 2 - 1 Original Alignment agTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCg gtgggggtagcaagtgctaaggactatctcctgattctcggctgccgcagaaTCGGGCCAGGATGGACAGTCGGATCCCGTCTCTAACCCAGATCCAGTGAGGATGCCAGCTGAAATGATAGTGCTTTTAGATTCTCAAGGCAACCCATCTCTCCCCACAAGGCTACGGCCTAGAGGACTCCGACCT---GAGTTGCCAagtagggcatccagtattcttggcttcggtgggacatcataaagtagggca Alignment from CESAR agTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCg gtgggggtagcaagtgctaaggactatctcctgattctcggctgccgcagaaTCGGGCCAGGATGGACAGTCGGATCCCGTCTCTAACCCAGATCCAGTGAGGATGCCAGCTGAAATGATAGTGCTTTTAGATTCTCAAGGCAACCCATCTCTCCCCACAAGGCTACGGCCTAGAGGACTCCGACCT---GAGTTGCCAagtagggcatccagtattcttggcttcggtgggacatcataaagtagggca Alignment from Spaln_aa2Genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gtgggggtagcaagtgctaaggactatctcctgattctcggctgccgcagAATCGGGCCAGGATGGACAGTCGGATCCCGTCTCTAACCCAGATCCAGTGAGGATGCCAGCTGAAATGATAGTGCTTTTAGATTCTCAAGGCAACCCATCTCTCCCCACAAGGCTACGGCCTAGAGGACTCCGACCT---GAGTTGCCAAgtagggcatccagtattcttggcttcggtgggacatcataaagtagggca Alignment from Spaln_nt2Genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gtgggggtagcaagtgctaaggactatctcctgattctcggctgccgcagAATCGGGCCAGGATGGACAGTCGGATCCCGTCTCTAACCCAGATCCAGTGAGGATGCCAGCTGAAATGATAGTGCTTTTAGATTCTCAAGGCAACCCATCTCTCCCCACAAGGCTACGGCCTAGAGGACTCCGACC---TGAGTTGCCAAgtagggcatccagtattcttggcttcggtgggacatcataaagtagggca Alignment from Pairagon AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gtgggggtagcaagtgctaaggactatctcctgattctcggctgccgcagAATCGGGCCAGGATGGACAGTCGGATCCCGTCTCTAACCCAGATCCAGTGAGGATGCCAGCTGAAATGATAGTGCTTTTAGATTCTCAAGGCAACCCATCTCTCCCCACAAGGCTACGGCCTAGAGGACTCCGACC---TGAGTTGCCAAgtagggcatccagtattcttggcttcggtgggacatcataaagtagggca Alignment from Exonerate_protein2genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gtgggggtagcaagtgctaaggactatctcctgattctcggctgccgcagAATCGGGCCAGGATGGACAGTCGGATCCCGTCTCTAACCCAGATCCAGTGAGGATGCCAGCTGAAATGATAGTGCTTTTAGATTCTCAAGGCAACCCATCTCTCCCCACAAGGCTACGGCCTAGAGGACTCCGACCT---GAGTTGCCAAgtagggcatccagtattcttggcttcggtgggacatcataaagtagggca Alignment from Exonerate_coding2genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gtgggggtagcaagtgctaaggactatctcctgattctcggctgccgcagAATCGGGCCAGGATGGACAGTCGGATCCCGTCTCTAACCCAGATCCAGTGAGGATGCCAGCTGAAATGATAGTGCTTTTAGATTCTCAAGGCAACCCATCTCTCCCCACAAGGCTACGGCCTAGAGGACTCCGACCT---GAGTTGCCAAgtagggcatccagtattcttggcttcggtgggacatcataaagtagggca Alignment from GeneWise AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gtgggggtagcaagtgctaaggactatctcctgattctcggctgccgcagAATCGGGCCAGGATGGACAGTCGGATCCCGTCTCTAACCCAGATCCAGTGAGGATGCCAGCTGAAATGATAGTGCTTTTAGATTCTCAAGGCAACCCATCTCTCCCCACAAGGCTACGGCCTAGAGGACTCCGACCT---GAGTTGCCAAgtagggcatccagtattcttggcttcggtgggacatcataaagtagggca #### Abcc2_ID8820_4 --> 0 - 0 Original Alignment CTCCTGGTGTTGGTGATCCAACACTGCAGGCAATGCTGTATACAGAAGAATTCTTGGTTCCTGTCCATGTTCTGGATTCTCTCTCTATTATGTGGCATATTCCAGTTTCAGACTCTGATACGAGCACTCCTGCAG gagacagtggggggactgaaagcaaactaaagttcttaatgtatttttagCTTCTGGTACTAGTGATTCAGCATTGTAGGCAAAGCTGCCTACAGAAGAATTCATGGTTCTTGTCAATGTTCTGGATACACTCTCTGTTATGTGGTATTTTTCAGTTCCAGACCCTAATACGAGCACTAGTACAGgtaagcgggaaaggatgatggcaaatcctataaagtatagagatgcaggt Alignment from CESAR CTCCTGGTGTTGGTGATCCAACACTGCAGGCAATGCTGTATACAGAAGAATTCTTGGTTCCTGTCCATGTTCTGGATTCTCTCTCTATTATGTGGCATATTCCAGTTTCAGACTCTGATACGAGCACTCCTGCAG gagacagtggggggactgaaagcaaactaaagttcttaatgtatttttagCTTCTGGTACTAGTGATTCAGCATTGTAGGCAAAGCTGCCTACAGAAGAATTCATGGTTCTTGTCAATGTTCTGGATACACTCTCTGTTATGTGGTATTTTTCAGTTCCAGACCCTAATACGAGCACTAGTACAGgtaagcgggaaaggatgatggcaaatcctataaagtatagagatgcaggt Alignment from Spaln_aa2Genome CTCCTGGTGTTGGTGATCCAACACTGCAGGCAATGCTGTATACAGAAGAATTCTTGGTTCCTGTCCATGTTCTGGATTCTCTCTCTATTATGTGGCATATTCCAGTTTCAGACTCTGATACGAGCACTCCTGCAG gagacagtggggggactgaaagcaaactaaagttcttaatgtatttttagCTTCTGGTACTAGTGATTCAGCATTGTAGGCAAAGCTGCCTACAGAAGAATTCATGGTTCTTGTCAATGTTCTGGATACACTCTCTGTTATGTGGTATTTTTCAGTTCCAGACCCTAATACGAGCACTAGTACAGgtaagcgggaaaggatgatggcaaatcctataaagtatagagatgcaggt Alignment from Spaln_nt2Genome CTCCTGGTGTTGGTGATCCAACACTGCAGGCAATGCTGTATACAGAAGAATTCTTGGTTCCTGTCCATGTTCTGGATTCTCTCTCTATTATGTGGCATATTCCAGTTTCAGACTCTGATACGAGCACTCCTGCAG gagacagtggggggactgaaagcaaactaaagttcttaatgtatttttagCTTCTGGTACTAGTGATTCAGCATTGTAGGCAAAGCTGCCTACAGAAGAATTCATGGTTCTTGTCAATGTTCTGGATACACTCTCTGTTATGTGGTATTTTTCAGTTCCAGACCCTAATACGAGCACTAGTACAGgtaagcgggaaaggatgatggcaaatcctataaagtatagagatgcaggt Alignment from Pairagon CTCCTGGTGTTGGTGATCCAACACTGCAGGCAATGCTGTATACAGAAGAATTCTTGGTTCCTGTCCATGTTCTGGATTCTCTCTCTATTATGTGGCATATTCCAGTTTCAGACTCTGATACGAGCACTCCTGCAG gagacagtggggggactgaaagcaaactaaagttcttaatgtatttttagCTTCTGGTACTAGTGATTCAGCATTGTAGGCAAAGCTGCCTACAGAAGAATTCATGGTTCTTGTCAATGTTCTGGATACACTCTCTGTTATGTGGTATTTTTCAGTTCCAGACCCTAATACGAGCACTAGTACAGgtaagcgggaaaggatgatggcaaatcctataaagtatagagatgcaggt Alignment from Exonerate_protein2genome CTCCTGGTGTTGGTGATCCAACACTGCAGGCAATGCTGTATACAGAAGAATTCTTGGTTCCTGTCCATGTTCTGGATTCTCTCTCTATTATGTGGCATATTCCAGTTTCAGACTCTGATACGAGCACTCCTGCAG gagacagtggggggactgaaagcaaactaaagttcttaatgtatttttagCTTCTGGTACTAGTGATTCAGCATTGTAGGCAAAGCTGCCTACAGAAGAATTCATGGTTCTTGTCAATGTTCTGGATACACTCTCTGTTATGTGGTATTTTTCAGTTCCAGACCCTAATACGAGCACTAGTACAGgtaagcgggaaaggatgatggcaaatcctataaagtatagagatgcaggt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTCCTGGTGTTGGTGATCCAACACTGCAGGCAATGCTGTATACAGAAGAATTCTTGGTTCCTGTCCATGTTCTGGATTCTCTCTCTATTATGTGGCATATTCCAGTTTCAGACTCTGATACGAGCACTCCTGCAG gagacagtggggggactgaaagcaaactaaagttcttaatgtatttttagCTTCTGGTACTAGTGATTCAGCATTGTAGGCAAAGCTGCCTACAGAAGAATTCATGGTTCTTGTCAATGTTCTGGATACACTCTCTGTTATGTGGTATTTTTCAGTTCCAGACCCTAATACGAGCACTAGTACAGgtaagcgggaaaggatgatggcaaatcctataaagtatagagatgcaggt #### Abcc2_ID8828_12 --> 0 - 0 Original Alignment ATCCTGAAATACTTTGCCTGGGAACCTTCCTTTAAAGAGCAAGTGAACAGCATTCGGAAGAAAGAACTCAGGAACTTGCTGCGCTTCAGCCAGCTGCAGACGATTTTGATTTTCATCTTACACCTAACTCCAACCCTG ccaggtcagtctttttgagactcagttctcactcaggcctttgctcctagATCCTAAAGCATTTTGCCTGGGAGCCTGCCTTTAAAGAGCAGGTTAATAGCATCCGGGAAAAAAAACTACGAAAC---TTATACCTTAGCCGACTGCAGTCAATCTTAATTTTCATTTTGCACCTAACACCTACTTTGgtgggtaatgatatacagtgtaagggccaatgatgtaactggtaagggca Alignment from CESAR ATCCTGAAATACTTTGCCTGGGAACCTTCCTTTAAAGAGCAAGTGAACAGCATTCGGAAGAAAGAACTCAGGAACTTGCTGCGCTTCAGCCAGCTGCAGACGATTTTGATTTTCATCTTACACCTAACTCCAACCCTG ccaggtcagtctttttgagactcagttctcactcaggcctttgctcctagATCCTAAAGCATTTTGCCTGGGAGCCTGCCTTTAAAGAGCAGGTTAATAGCATCCGGGAAAAAAAACTACGAAACTTA---TACCTTAGCCGACTGCAGTCAATCTTAATTTTCATTTTGCACCTAACACCTACTTTGgtgggtaatgatatacagtgtaagggccaatgatgtaactggtaagggca Alignment from Spaln_aa2Genome ATCCTGAAATACTTTGCCTGGGAACCTTCCTTTAAAGAGCAAGTGAACAGCATTCGGAAGAAAGAACTCAGGAACTTGCTGCGCTTCAGCCAGCTGCAGACGATTTTGATTTTCATCTTACACCTAACTCCAACCCTG ccaggtcagtctttttgagactcagttctcactcaggcctttgctcctagATCCTAAAGCATTTTGCCTGGGAGCCTGCCTTTAAAGAGCAGGTTAATAGCATCCGGGAAAAAAAACTACGAAACTTATAC---CTTAGCCGACTGCAGTCAATCTTAATTTTCATTTTGCACCTAACACCTACTTTGgtgggtaatgatatacagtgtaagggccaatgatgtaactggtaagggca Alignment from Spaln_nt2Genome ATCCTGAAATACTTTGCCTGGGAACCTTCCTTTAAAGAGCAAGTGAACAGCATTCGGAAGAAAGAACTCAGGAACTTGCTGCGCTTCAGCCAGCTGCAGACGATTTTGATTTTCATCTTACACCTAACTCCAACCCTG ccaggtcagtctttttgagactcagttctcactcaggcctttgctcctagATCCTAAAGCATTTTGCCTGGGAGCCTGCCTTTAAAGAGCAGGTTAATAGCATCCGGGAAAAAAAACTACGAAACT---TATACCTTAGCCGACTGCAGTCAATCTTAATTTTCATTTTGCACCTAACACCTACTTTGgtgggtaatgatatacagtgtaagggccaatgatgtaactggtaagggca Alignment from Pairagon ATCCTGAAATACTTTGCCTGGGAACCTTCCTTTAAAGAGCAAGTGAACAGCATTCGGAAGAAAGAACTCAGGAACTTGCTGCGCTTCAGCCAGCTGCAGACGATTTTGATTTTCATCTTACACCTAACTCCAACCCTG ccaggtcagtctttttgagactcagttctcactcaggcctttgctcctagATCCTAAAGCATTTTGCCTGGGAGCCTGCCTTTAAAGAGCAGGTTAATAGCATCCGGGAAAAAAAACTACGAAACT---TATACCTTAGCCGACTGCAGTCAATCTTAATTTTCATTTTGCACCTAACACCTACTTTGgtgggtaatgatatacagtgtaagggccaatgatgtaactggtaagggca Alignment from Exonerate_protein2genome ATCCTGAAATACTTTGCCTGGGAACCTTCCTTTAAAGAGCAAGTGAACAGCATTCGGAAGAAAGAACTCAGGAACTTGCTGCGCTTCAGCCAGCTGCAGACGATTTTGATTTTCATCTTACACCTAACTCCAACCCTG ccaggtcagtctttttgagactcagttctcactcaggcctttgctcctagATCCTAAAGCATTTTGCCTGGGAGCCTGCCTTTAAAGAGCAGGTTAATAGCATCCGGGAAAAAAAACTACGAAACTTATAC---CTTAGCCGACTGCAGTCAATCTTAATTTTCATTTTGCACCTAACACCTACTTTGgtgggtaatgatatacagtgtaagggccaatgatgtaactggtaagggca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATCCTGAAATACTTTGCCTGGGAACCTTCCTTTAAAGAGCAAGTGAACAGCATTCGGAAGAAAGAACTCAGGAACTTGCTGCGCTTCAGCCAGCTGCAGACGATTTTGATTTTCATCTTACACCTAACTCCAACCCTG ccaggtcagtctttttgagactcagttctcactcaggcctttgctcctagATCCTAAAGCATTTTGCCTGGGAGCCTGCCTTTAAAGAGCAGGTTAATAGCATCCGGGAAAAAAAACTACGAAACTTATAC---CTTAGCCGACTGCAGTCAATCTTAATTTTCATTTTGCACCTAACACCTACTTTGgtgggtaatgatatacagtgtaagggccaatgatgtaactggtaagggca #### Abcc2_ID8836_20 --> 2 - 2 Original Alignment tcGATAACGACAGTGAGGAAGAGGATGGTGACTGTGGGCTGATCCCAACTGTGGAGGAAATTCCTGACGATGCAGCTTCCTTGACCATGAGAAGGGAGAACAGCCTTCGCCGAACACTGAGCCGCag atcatatagttgtaaatgacactggacacacatttggatgttctttgaagttGATAATGACAGTGAAGAAGAGGATGGTGATTGTGGGCTAATTCCGACTGTAGAAGAGATT------CATGCAGCTTCATTGACCATGAGAAGGGAAAACAGTTTACGACAAACACTGAGCTGTaggtgagttagtacagtttttttttggtcctcccctttcagtagagactggt Alignment from CESAR tcGATAACGACAGTGAGGAAGAGGATGGTGACTGTGGGCTGATCCCAACTGTGGAGGAAATTCCTGACGATGCAGCTTCCTTGACCATGAGAAGGGAGAACAGCCTTCGCCGAACACTGAGCCGCag atcatatagttgtaaatgacactggacacacatttggatgttctttgaagttGATAATGACAGTGAAGAAGAGGATGGTGATTGTGGGCTAATTCCGACTGTAGAAGAGATTCAT------GCAGCTTCATTGACCATGAGAAGGGAAAACAGTTTACGACAAACACTGAGCTGTaggtgagttagtacagtttttttttggtcctcccctttcagtagagactggt Alignment from Spaln_aa2Genome TCGATAACGACAGTGAGGAAGAGGATGGTGACTGTGGGCTGATCCCAACTGTGGAGGAAATTCCTGACGATGCAGCTTCCTTGACCATGAGAAGGGAGAACAGCCTTCGCCGAACACTGAGCCGCAG atcatatagttgtaaatgacactggacacacatttggatgttctttgaagTTGATAATGACAGTGAAGAAGAGGATGGTGATTGTGGGCTAATTCCGACTGTAGAAGAGATT------CATGCAGCTTCATTGACCATGAGAAGGGAAAACAGTTTACGACAAACACTGAGCTGTAGgtgagttagtacagtttttttttggtcctcccctttcagtagagactggt Alignment from Spaln_nt2Genome TCGATAACGACAGTGAGGAAGAGGATGGTGACTGTGGGCTGATCCCAACTGTGGAGGAAATTCCTGACGATGCAGCTTCCTTGACCATGAGAAGGGAGAACAGCCTTCGCCGAACACTGAGCCGCAG atcatatagttgtaaatgacactggacacacatttggatgttctttgaagTTGATAATGACAGTGAAGAAGAGGATGGTGATTGTGGGCTAATTCCGACTGTAGAAGAGATTC------ATGCAGCTTCATTGACCATGAGAAGGGAAAACAGTTTACGACAAACACTGAGCTGTAGgtgagttagtacagtttttttttggtcctcccctttcagtagagactggt Alignment from Pairagon TCGATAACGACAGTGAGGAAGAGGATGGTGACTGTGGGCTGATCCCAACTGTGGAGGAAATTCCTGACGATGCAGCTTCCTTGACCATGAGAAGGGAGAACAGCCTTCGCCGAACACTGAGCCGCAG atcatatagttgtaaatgacactggacacacatttggatgttctttgaagTTGATAATGACAGTGAAGAAGAGGATGGTGATTGTGGGCTAATTCCGACTGTAGAAGAGATTC------ATGCAGCTTCATTGACCATGAGAAGGGAAAACAGTTTACGACAAACACTGAGCTGTAGgtgagttagtacagtttttttttggtcctcccctttcagtagagactggt Alignment from Exonerate_protein2genome TCGATAACGACAGTGAGGAAGAGGATGGTGACTGTGGGCTGATCCCAACTGTGGAGGAAATTCCTGACGATGCAGCTTCCTTGACCATGAGAAGGGAGAACAGCCTTCGCCGAACACTGAGCCGCAG atcatatagttgtaaatgacactggacacacatttggatgttctttgaagTTGATAATGACAGTGAAGAAGAGGATGGTGATTGTGGGCTAATTCCGACTGTAGAAGAGATT------CATGCAGCTTCATTGACCATGAGAAGGGAAAACAGTTTACGACAAACACTGAGCTGTAGgtgagttagtacagtttttttttggtcctcccctttcagtagagactggt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TCGATAACGACAGTGAGGAAGAGGATGGTGACTGTGGGCTGATCCCAACTGTGGAGGAAATTCCTGACGATGCAGCTTCCTTGACCATGAGAAGGGAGAACAGCCTTCGCCGAACACTGAGCCGCAG atcatatagttgtaaatgacactggacacacatttggatgttctttgaagTTGATAATGACAGTGAAGAAGAGGATGGTGATTGTGGGCTAATTCCGACTGTAGAAGAGATT------CATGCAGCTTCATTGACCATGAGAAGGGAAAACAGTTTACGACAAACACTGAGCTGTAGgtgagttagtacagtttttttttggtcctcccctttcagtagagactggt #### Acsl5_ID11597_2 --> 0 - 1 Original Alignment GGAGGAGCA------CGGAGGGGCGCTTTCCAGAAGAACAATGACCTAATCCTTTATTACTTCTCAGACGCCAAGACGTTGTATGAAAATTTCCAAAGAGGACTTGCTGTGTCTg tccaagggtcaaattgcagtagaaagtttccctgtctctgtgctttgcagGGGGGAGCACCTGCTGGAAGGGGGGCAGTTAAGGAGAATAATGACCTAATCCTCTGTTATTTCTCAGATTCA------CCATATGAGAATGTCCAGAGGGGACTTGCTGTGTCTggtctgattgctcacttgatctcttattgtgggccatcgaacatgagcttg Alignment from CESAR GGAGGAGCA------CGGAGGGGCGCTTTCCAGAAGAACAATGACCTAATCCTTTATTACTTCTCAGACGCCAAGACGTTGTATGAAAATTTCCAAAGAGGACTTGCTGTGTCTg tccaagggtcaaattgcagtagaaagtttccctgtctctgtgctttgcagGGGGGAGCACCTGCTGGAAGGGGGGCAGTTAAGGAGAATAATGACCTAATCCTCTGTTATTTCTCAGAT------TCACCATATGAGAATGTCCAGAGGGGACTTGCTGTGTCTggtctgattgctcacttgatctcttattgtgggccatcgaacatgagcttg Alignment from Spaln_aa2Genome GGAGGA------GCACGGAGGGGCGCTTTCCAGAAGAACAATGACCTAATCCTTTATTACTTCTCAGACGCCAAGACGTTGTATGAAAATTTCCAAAGAGGACTTGCTGTGTCTG tccaagggtcaaattgcagtagaaagtttccctgtctctgtgctttgcagGGGGGAGCACCTGCTGGAAGGGGGGCAGTTAAGGAGAATAATGACCTAATCCTCTGTTATTTCTCAGAT------TCACCATATGAGAATGTCCAGAGGGGACTTGCTGTGTCTGgtctgattgctcacttgatctcttattgtgggccatcgaacatgagcttg Alignment from Spaln_nt2Genome GGAGGAGCAC------GGAGGGGCGCTTTCCAGAAGAACAATGACCTAATCCTTTATTACTTCTCAGACGCCAAGACGTTGTATGAAAATTTCCAAAGAGGACTTGCTGTGTCTG tccaagggtcaaattgcagtagaaagtttccctgtctctgtgctttgcagGGGGGAGCACCTGCTGGAAGGGGGGCAGTTAAGGAGAATAATGACCTAATCCTCTGTTATTTCTCAGATTC----AC--CATATGAGAATGTCCAGAGGGGACTTGCTGTGTCTGgtctgattgctcacttgatctcttattgtgggccatcgaacatgagcttg Alignment from Pairagon GGAGGAGCAC------GGAGGGGCGCTTTCCAGAAGAACAATGACCTAATCCTTTATTACTTCTCAGA--CGCCAAGACGTTGTATGAAAATTTCCAAAGAGGACTTGCTGTGTCTG tccaagggtcaaattgcagtagaaagtttccctgtctctgtgctttgcagGGGGGAGCACCTGCTGGAAGGGGGGCAGTTAAGGAGAATAATGACCTAATCCTCTGTTATTTCTCAGATTCACCA--------TATGAGAATGTCCAGAGGGGACTTGCTGTGTCTGgtctgattgctcacttgatctcttattgtgggccatcgaacatgagcttg Alignment from Exonerate_protein2genome GGAGGA------GCACGGAGGGGCGCTTTCCAGAAGAACAATGACCTAATCCTTTATTACTTCTCAGACGCCAAGACGTTGTATGAAAATTTCCAAAGAGGACTTGCTGTGTCTG tccaagggtcaaattgcagtagaaagtttccctgtctctgtgctttgcagGGGGGAGCACCTGCTGGAAGGGGGGCAGTTAAGGAGAATAATGACCTAATCCTCTGTTATTTCTCAGATTCACCA------TATGAGAATGTCCAGAGGGGACTTGCTGTGTCTGgtctgattgctcacttgatctcttattgtgggccatcgaacatgagcttg Alignment from Exonerate_coding2genome GCACGGAGGGGCGCTTTCCAGAAGAACAATGACCTAATCCTTTATTACTTCTCAGACGCCAAGACGTTGTATGAAAATTTCCAAAGAGGACTTGCTGTGTCTG tccaagggtcaaattgcagtagaaagtttccctgtctctgtgctttgcaggggggagcacctGCTGGAAGGGGGGCAGTTAAGGAGAATAATGACCTAATCCTCTGTTATTTCTCAGATTCACCA------TATGAGAATGTCCAGAGGGGACTTGCTGTGTCTGgtctgattgctcacttgatctcttattgtgggccatcgaacatgagcttg Alignment from GeneWise GGAGGAGCA------CGGAGGGGCGCTTTCCAGAAGAACAATGACCTAATCCTTTATTACTTCTCAGACGCCAAGACGTTGTATGAAAATTTCCAAAGAGGACTTGCTGTGTCTG tccaagggtcaaattgcagtagaaagtttccctgtctctgtgctttgcagGGGGGAGCACCTGCTGGAAGGGGGGCAGTTAAGGAGAATAATGACCTAATCCTCTGTTATTTCTCAGATTCACCA------TATGAGAATGTCCAGAGGGGACTTGCTGTGTCTGgtctgattgctcacttgatctcttattgtgggccatcgaacatgagcttg #### Acsl5_ID11602_7 --> 0 - 0 Original Alignment AATATAGGCAAAGAGAACTTCAAAAAACCAGTG acattcaattataatgattctttttggtcatgtgcattttccctctgcagAATATAGGCAAAGAGAACTTCAAGAAACCAGTGgtgagccttatatgtttgctagttatgagctgcttttcacctctgtaact Alignment from CESAR AATATAGGCAAAGAGAACTTCAAAAAACCAGTG acattcaattataatgattctttttggtcatgtgcattttccctctgcagAATATAGGCAAAGAGAACTTCAAGAAACCAGTGgtgagccttatatgtttgctagttatgagctgcttttcacctctgtaact Alignment from Spaln_aa2Genome AATATAGGCAAAGAGAACTTCAAAAAACCAGTG acattcaattataatgattctttttggtcatgtgcattttccctctgcagAATATAGGCAAAGAGAACTTCAAGAAACCAGTGgtgagccttatatgtttgctagttatgagctgcttttcacctctgtaact Alignment from Spaln_nt2Genome AATATAGGCAAAGAGAACTTCAAAAAACCAGTG acattcaattataatgattctttttggtcatgtgcattttccctctgcagAATATAGGCAAAGAGAACTTCAAGAAACCAGTGgtgagccttatatgtttgctagttatgagctgcttttcacctctgtaact Alignment from Pairagon AATATAGGCAAAGAGAACTTCAAAAAACCAGTG acattcaattataatgattctttttggtcatgtgcattttccctctgcagAATATAGGCAAAGAGAACTTCAAGAAACCAGTGgtgagccttatatgtttgctagttatgagctgcttttcacctctgtaact Alignment from Exonerate_protein2genome AATATAGGCAAAGAGAACTTCAAAAAACCAGTG acattcaattataatgattctttttggtcatgtgcattttccctctgcagAATATAGGCAAAGAGAACTTCAAGAAACCAGTGgtgagccttatatgtttgctagttatgagctgcttttcacctctgtaact Alignment from Exonerate_coding2genome AATATAGGCAAAGAGAACTTCAAAAAACCAGTG acattcaattataatgattctttttggtcatgtgcattttccctctgcagAATATAGGCAAAGAGAACTTCAAGAAACCAGTGgtgagccttatatgtttgctagttatgagctgcttttcacctctgtaact Alignment from GeneWise AATATAGGCAAAGAGAACTTCAAAAAACCAGTG acattcaattataatgattctttttggtcatgtgcattttccctctgcagAATATAGGCAAAGAGAACTTCAAGAAACCAGTGgtgagccttatatgtttgctagttatgagctgcttttcacctctgtaact #### Acsl5_ID11604_9 --> 2 - 0 Original Alignment gtGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG taaccatcaagatattgatgctctttctttgacctatgagaaccttacaggtGATCCTGAAGGAGCCATGTTGACACATGAAAATGTTGTTTCTAACATGGCTGCATTTCTTAAACTTCTAGAGgtgagcaggattcaccacaaagtaaattgacaatatgagtctcatggtca Alignment from CESAR gtGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG taaccatcaagatattgatgctctttctttgacctatgagaaccttacaggtGATCCTGAAGGAGCCATGTTGACACATGAAAATGTTGTTTCTAACATGGCTGCATTTCTTAAACTTCTAGAGgtgagcaggattcaccacaaagtaaattgacaatatgagtctcatggtca Alignment from Spaln_aa2Genome GTGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG taaccatcaagatattgatgctctttctttgacctatgagaaccttacagGTGATCCTGAAGGAGCCATGTTGACACATGAAAATGTTGTTTCTAACATGGCTGCATTTCTTAAACTTCTAGAGgtgagcaggattcaccacaaagtaaattgacaatatgagtctcatggtca Alignment from Spaln_nt2Genome GTGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG taaccatcaagatattgatgctctttctttgacctatgagaaccttacagGTGATCCTGAAGGAGCCATGTTGACACATGAAAATGTTGTTTCTAACATGGCTGCATTTCTTAAACTTCTAGAGgtgagcaggattcaccacaaagtaaattgacaatatgagtctcatggtca Alignment from Pairagon GTGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG taaccatcaagatattgatgctctttctttgacctatgagaaccttacagGTGATCCTGAAGGAGCCATGTTGACACATGAAAATGTTGTTTCTAACATGGCTGCATTTCTTAAACTTCTAGAGgtgagcaggattcaccacaaagtaaattgacaatatgagtctcatggtca Alignment from Exonerate_protein2genome GTGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG taaccatcaagatattgatgctctttctttgacctatgagaaccttacagGTGATCCTGAAGGAGCCATGTTGACACATGAAAATGTTGTTTCTAACATGGCTGCATTTCTTAAACTTCTAGAGgtgagcaggattcaccacaaagtaaattgacaatatgagtctcatggtca Alignment from Exonerate_coding2genome GTGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG taaccatcaagatattgatgctctttctttgacctatgagaaccttacagGTGATCCTGAAGGAGCCATGTTGACACATGAAAATGTTGTTTCTAACATGGCTGCATTTCTTAAACTTCTAGAGgtgagcaggattcaccacaaagtaaattgacaatatgagtctcatggtca Alignment from GeneWise GTGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG taaccatcaagatattgatgctctttctttgacctatgagaaccttacagGTGATCCTGAAGGAGCCATGTTGACACATGAAAATGTTGTTTCTAACATGGCTGCATTTCTTAAACTTCTAGAGgtgagcaggattcaccacaaagtaaattgacaatatgagtctcatggtca #### Acsl5_ID11607_12 --> 0 - 0 Original Alignment GTACAAAATGAAGCCAAGACACCTTTGAAGAAGTTCTTGTTGAACTTGGCTATCATCAGTAAATTCAATGAAGTGAAAAATGGCATCATTCGGCGGGACAGTTTGTGGGACAAGCTCGTGTTTTCAAAGATTCAA atatgtgactggctaaacatcacagtagtgtctgtaccctctggtttcagGTACAGAATGAGGCTAGAACCCCACTGAAGAAGTTCTTGCTAAACCTAGCTATTATCAGCAAGCTTAATGAAGTGAAAAATGCGATCATTCGCCAGGATAGTCTATGGGATAAGCTTGTTTTCTCTAAGATCCAAgtgagttgagagtaatctgagtgaaaactagtttttcaaaaaattgatgt Alignment from CESAR GTACAAAATGAAGCCAAGACACCTTTGAAGAAGTTCTTGTTGAACTTGGCTATCATCAGTAAATTCAATGAAGTGAAAAATGGCATCATTCGGCGGGACAGTTTGTGGGACAAGCTCGTGTTTTCAAAGATTCAA atatgtgactggctaaacatcacagtagtgtctgtaccctctggtttcagGTACAGAATGAGGCTAGAACCCCACTGAAGAAGTTCTTGCTAAACCTAGCTATTATCAGCAAGCTTAATGAAGTGAAAAATGCGATCATTCGCCAGGATAGTCTATGGGATAAGCTTGTTTTCTCTAAGATCCAAgtgagttgagagtaatctgagtgaaaactagtttttcaaaaaattgatgt Alignment from Spaln_aa2Genome GTACAAAATGAAGCCAAGACACCTTTGAAGAAGTTCTTGTTGAACTTGGCTATCATCAGTAAATTCAATGAAGTGAAAAATGGCATCATTCGGCGGGACAGTTTGTGGGACAAGCTCGTGTTTTCAAAGATTCAA atatgtgactggctaaacatcacagtagtgtctgtaccctctggtttcagGTACAGAATGAGGCTAGAACCCCACTGAAGAAGTTCTTGCTAAACCTAGCTATTATCAGCAAGCTTAATGAAGTGAAAAATGCGATCATTCGCCAGGATAGTCTATGGGATAAGCTTGTTTTCTCTAAGATCCAAgtgagttgagagtaatctgagtgaaaactagtttttcaaaaaattgatgt Alignment from Spaln_nt2Genome GTACAAAATGAAGCCAAGACACCTTTGAAGAAGTTCTTGTTGAACTTGGCTATCATCAGTAAATTCAATGAAGTGAAAAATGGCATCATTCGGCGGGACAGTTTGTGGGACAAGCTCGTGTTTTCAAAGATTCAA atatgtgactggctaaacatcacagtagtgtctgtaccctctggtttcagGTACAGAATGAGGCTAGAACCCCACTGAAGAAGTTCTTGCTAAACCTAGCTATTATCAGCAAGCTTAATGAAGTGAAAAATGCGATCATTCGCCAGGATAGTCTATGGGATAAGCTTGTTTTCTCTAAGATCCAAgtgagttgagagtaatctgagtgaaaactagtttttcaaaaaattgatgt Alignment from Pairagon GTACAAAATGAAGCCAAGACACCTTTGAAGAAGTTCTTGTTGAACTTGGCTATCATCAGTAAATTCAATGAAGTGAAAAATGGCATCATTCGGCGGGACAGTTTGTGGGACAAGCTCGTGTTTTCAAAGATTCAA atatgtgactggctaaacatcacagtagtgtctgtaccctctggtttcagGTACAGAATGAGGCTAGAACCCCACTGAAGAAGTTCTTGCTAAACCTAGCTATTATCAGCAAGCTTAATGAAGTGAAAAATGCGATCATTCGCCAGGATAGTCTATGGGATAAGCTTGTTTTCTCTAAGATCCAAgtgagttgagagtaatctgagtgaaaactagtttttcaaaaaattgatgt Alignment from Exonerate_protein2genome GTACAAAATGAAGCCAAGACACCTTTGAAGAAGTTCTTGTTGAACTTGGCTATCATCAGTAAATTCAATGAAGTGAAAAATGGCATCATTCGGCGGGACAGTTTGTGGGACAAGCTCGTGTTTTCAAAGATTCAA atatgtgactggctaaacatcacagtagtgtctgtaccctctggtttcagGTACAGAATGAGGCTAGAACCCCACTGAAGAAGTTCTTGCTAAACCTAGCTATTATCAGCAAGCTTAATGAAGTGAAAAATGCGATCATTCGCCAGGATAGTCTATGGGATAAGCTTGTTTTCTCTAAGATCCAAgtgagttgagagtaatctgagtgaaaactagtttttcaaaaaattgatgt Alignment from Exonerate_coding2genome GTACAAAATGAAGCCAAGACACCTTTGAAGAAGTTCTTGTTGAACTTGGCTATCATCAGTAAATTCAATGAAGTGAAAAATGGCATCATTCGGCGGGACAGTTTGTGGGACAAGCTCGTGTTTTCAAAGATTCAA atatgtgactggctaaacatcacagtagtgtctgtaccctctggtttcagGTACAGAATGAGGCTAGAACCCCACTGAAGAAGTTCTTGCTAAACCTAGCTATTATCAGCAAGCTTAATGAAGTGAAAAATGCGATCATTCGCCAGGATAGTCTATGGGATAAGCTTGTTTTCTCTAAGATCCAAgtgagttgagagtaatctgagtgaaaactagtttttcaaaaaattgatgt Alignment from GeneWise GTACAAAATGAAGCCAAGACACCTTTGAAGAAGTTCTTGTTGAACTTGGCTATCATCAGTAAATTCAATGAAGTGAAAAATGGCATCATTCGGCGGGACAGTTTGTGGGACAAGCTCGTGTTTTCAAAGATTCAA atatgtgactggctaaacatcacagtagtgtctgtaccctctggtttcagGTACAGAATGAGGCTAGAACCCCACTGAAGAAGTTCTTGCTAAACCTAGCTATTATCAGCAAGCTTAATGAAGTGAAAAATGCGATCATTCGCCAGGATAGTCTATGGGATAAGCTTGTTTTCTCTAAGATCCAAgtgagttgagagtaatctgagtgaaaactagtttttcaaaaaattgatgt #### Acsl5_ID11611_16 --> 0 - 0 Original Alignment ATCTGCATCAAAGGTAACAATGTGTTCAAAGGCTACCTAAAGGACCCAGAGAAAACACAGGAAGTACTGGACAAGGATGGATGGCTTCACACTGGGGACATTGGTCGCTGGCTTCCA aagtaaatgtatgatatgcaggatatattttttttcttttttgactctagATCTGCATTAAAAGCAACAATGCATTCAAAGGTTACCTAAGGGGTGCGGAAAAAACACAAAAAGTAATTGACAAGGATGGGTGGCTTCATGCTGGGGACATTGGTCGTTGGCTCCCAgtgagcagctctcaacagtcagtggagccctatatacagtaacggaggat Alignment from CESAR ATCTGCATCAAAGGTAACAATGTGTTCAAAGGCTACCTAAAGGACCCAGAGAAAACACAGGAAGTACTGGACAAGGATGGATGGCTTCACACTGGGGACATTGGTCGCTGGCTTCCA aagtaaatgtatgatatgcaggatatattttttttcttttttgactctagATCTGCATTAAAAGCAACAATGCATTCAAAGGTTACCTAAGGGGTGCGGAAAAAACACAAAAAGTAATTGACAAGGATGGGTGGCTTCATGCTGGGGACATTGGTCGTTGGCTCCCAgtgagcagctctcaacagtcagtggagccctatatacagtaacggaggat Alignment from Spaln_aa2Genome ATCTGCATCAAAGGTAACAATGTGTTCAAAGGCTACCTAAAGGACCCAGAGAAAACACAGGAAGTACTGGACAAGGATGGATGGCTTCACACTGGGGACATTGGTCGCTGGCTTCCA aagtaaatgtatgatatgcaggatatattttttttcttttttgactctagATCTGCATTAAAAGCAACAATGCATTCAAAGGTTACCTAAGGGGTGCGGAAAAAACACAAAAAGTAATTGACAAGGATGGGTGGCTTCATGCTGGGGACATTGGTCGTTGGCTCCCAgtgagcagctctcaacagtcagtggagccctatatacagtaacggaggat Alignment from Spaln_nt2Genome ATCTGCATCAAAGGTAACAATGTGTTCAAAGGCTACCTAAAGGACCCAGAGAAAACACAGGAAGTACTGGACAAGGATGGATGGCTTCACACTGGGGACATTGGTCGCTGGCTTCCA aagtaaatgtatgatatgcaggatatattttttttcttttttgactctagATCTGCATTAAAAGCAACAATGCATTCAAAGGTTACCTAAGGGGTGCGGAAAAAACACAAAAAGTAATTGACAAGGATGGGTGGCTTCATGCTGGGGACATTGGTCGTTGGCTCCCAgtgagcagctctcaacagtcagtggagccctatatacagtaacggaggat Alignment from Pairagon ATCTGCATCAAAGGTAACAATGTGTTCAAAGGCTACCTAAAGGACCCAGAGAAAACACAGGAAGTACTGGACAAGGATGGATGGCTTCACACTGGGGACATTGGTCGCTGGCTTCCA aagtaaatgtatgatatgcaggatatattttttttcttttttgactctagATCTGCATTAAAAGCAACAATGCATTCAAAGGTTACCTAAGGGGTGCGGAAAAAACACAAAAAGTAATTGACAAGGATGGGTGGCTTCATGCTGGGGACATTGGTCGTTGGCTCCCAgtgagcagctctcaacagtcagtggagccctatatacagtaacggaggat Alignment from Exonerate_protein2genome ATCTGCATCAAAGGTAACAATGTGTTCAAAGGCTACCTAAAGGACCCAGAGAAAACACAGGAAGTACTGGACAAGGATGGATGGCTTCACACTGGGGACATTGGTCGCTGGCTTCCA aagtaaatgtatgatatgcaggatatattttttttcttttttgactctagATCTGCATTAAAAGCAACAATGCATTCAAAGGTTACCTAAGGGGTGCGGAAAAAACACAAAAAGTAATTGACAAGGATGGGTGGCTTCATGCTGGGGACATTGGTCGTTGGCTCCCAgtgagcagctctcaacagtcagtggagccctatatacagtaacggaggat Alignment from Exonerate_coding2genome ATCTGCATCAAAGGTAACAATGTGTTCAAAGGCTACCTAAAGGACCCAGAGAAAACACAGGAAGTACTGGACAAGGATGGATGGCTTCACACTGGGGACATTGGTCGCTGGCTTCCA aagtaaatgtatgatatgcaggatatattttttttcttttttgactctagATCTGCATTAAAAGCAACAATGCATTCAAAGGTTACCTAAGGGGTGCGGAAAAAACACAAAAAGTAATTGACAAGGATGGGTGGCTTCATGCTGGGGACATTGGTCGTTGGCTCCCAgtgagcagctctcaacagtcagtggagccctatatacagtaacggaggat Alignment from GeneWise ATCTGCATCAAAGGTAACAATGTGTTCAAAGGCTACCTAAAGGACCCAGAGAAAACACAGGAAGTACTGGACAAGGATGGATGGCTTCACACTGGGGACATTGGTCGCTGGCTTCCA aagtaaatgtatgatatgcaggatatattttttttcttttttgactctagATCTGCATTAAAAGCAACAATGCATTCAAAGGTTACCTAAGGGGTGCGGAAAAAACACAAAAAGTAATTGACAAGGATGGGTGGCTTCATGCTGGGGACATTGGTCGTTGGCTCCCAgtgagcagctctcaacagtcagtggagccctatatacagtaacggaggat #### Actn3_ID690_20 --> 0 - 0 Original Alignment GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG gagtatctctctctagcttaaaacatataaaaaaaaacccccaaatccagGGGGAGGTGGAGTCTGATCGAATCATGACAATGGTCGGCCCCAATGCAGCTGGAGTTGTAAACTTTCAGGCTTTCATAGACTCCATGACACGAAAGAATGCTGAGACGGACATAGCAGAACAGGTTGTTGCCTCATTG---ATCCTAACAGGTGATAAGgtaagtttctttcatgtgtatggttatgatcccaacacatgacccataaa Alignment from CESAR GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG gagtatctctctctagcttaaaacatataaaaaaaaacccccaaatccagGGGGAGGTGGAGTCTGATCGAATCATGACAATGGTCGGCCCCAATGCAGCTGGAGTTGTAAACTTTCAGGCTTTCATAGACTCCATGACACGAAAGAATGCTGAGACGGACATAGCAGAACAGGTTGTTGCCTCATTG---ATCCTAACAGGTGATAAGgtaagtttctttcatgtgtatggttatgatcccaacacatgacccataaa Alignment from Spaln_aa2Genome GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG gagtatctctctctagcttaaaacatataaaaaaaaacccccaaatccagGGGGAGGTGGAGTCTGATCGAATCATGACAATGGTCGGCCCCAATGCAGCTGGAGTTGTAAACTTTCAGGCTTTCATAGACTCCATGACACGAAAGAATGCTGAGACGGACATAGCAGAACAGGTTGTTGCCTCATTG---ATCCTAACAGGTGATAAGgtaagtttctttcatgtgtatggttatgatcccaacacatgacccataaa Alignment from Spaln_nt2Genome GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG gagtatctctctctagcttaaaacatataaaaaaaaacccccaaatccagGGGGAGGTGGAGTCTGATCGAATCATGACAATGGTCGGCCCCAATGCAGCTGGAGTTGTAAACTTTCAGGCTTTCATAGACTCCATGACACGAAAGAATGCTGAGACGGACATAGCAGAACAGGTTGTTGCCTCATT---GATCCTAACAGGTGATAAGgtaagtttctttcatgtgtatggttatgatcccaacacatgacccataaa Alignment from Pairagon GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG gagtatctctctctagcttaaaacatataaaaaaaaacccccaaatccagGGGGAGGTGGAGTCTGATCGAATCATGACAATGGTCGGCCCCAATGCAGCTGGAGTTGTAAACTTTCAGGCTTTCATAGACTCCATGACACGAAAGAATGCTGAGACGGACATAGCAGAACAGGTTGTTGCCTCATT---GATCCTAACAGGTGATAAGgtaagtttctttcatgtgtatggttatgatcccaacacatgacccataaa Alignment from Exonerate_protein2genome GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG gagtatctctctctagcttaaaacatataaaaaaaaacccccaaatccagGGGGAGGTGGAGTCTGATCGAATCATGACAATGGTCGGCCCCAATGCAGCTGGAGTTGTAAACTTTCAGGCTTTCATAGACTCCATGACACGAAAGAATGCTGAGACGGACATAGCAGAACAGGTTGTTGCCTCATTG---ATCCTAACAGGTGATAAGgtaagtttctttcatgtgtatggttatgatcccaacacatgacccataaa Alignment from Exonerate_coding2genome gagtatctctctctagcttaaaacatataaaaaaaaacccccaaatccagggggaggtggagtctgatcgaatcatgacaatggtcggccccaatgcagctggagttgtaaactttcaggctttcatagactccatgacacgaaagaatgctgagacggacatagcagaacaggttgttgcctcattgatcctaacaggtgataaggtaagtttctttcatgtgtatggttatgatcccaacacatgacccataaa Alignment from GeneWise GGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG gagtatctctctctagcttaaaacatataaaaaaaaacccccaaatccagGGGGAGGTGGAGTCTGATCGAATCATGACAATGGTCGGCCCCAATGCAGCTGGAGTTGTAAACTTTCAGGCTTTCATAGACTCCATGACACGAAAGAATGCTGAGACGGACATAGCAGAACAGGTTGTTGCCTCATTG---ATCCTAACAGGTGATAAGgtaagtttctttcatgtgtatggttatgatcccaacacatgacccataaa #### Actn3_ID695_15 --> 0 - 0 Original Alignment AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctacaggcaaatatggataatgcatcacctttcctttgtctccagAGCCTACTAACAGCACATGAACAATTCAAAGCAACTTTACCTGAAGCTGATCGAGAGCCAGGGGCTGTCCCAGGCATCCAAGGAAAGATTTCAAAGATCTGCCAAACATATGGGTCACGCCCGAAATTTGGAAACCCCTACATTACCCTCAGTATGAGGGACATCAATAATAAGTGGGATACTgtgagctacctggctttatgctaagtgagagttctattgtggcaatacta Alignment from CESAR AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctacaggcaaatatggataatgcatcacctttcctttgtctccagAGCCTACTAACAGCACATGAACAATTCAAAGCAACTTTACCTGAAGCTGATCGAGAGCCAGGGGCTGTCCCAGGCATCCAAGGAAAGATTTCAAAGATCTGCCAAACATATGGGTCACGCCCGAAATTTGGAAACCCCTACATTACCCTCAGTATGAGGGACATCAATAATAAGTGGGATACTgtgagctacctggctttatgctaagtgagagttctattgtggcaatacta Alignment from Spaln_aa2Genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctacaggcaaatatggataatgcatcacctttcctttgtctccagAGCCTACTAACAGCACATGAACAATTCAAAGCAACTTTACCTGAAGCTGATCGAGAGCCAGGGGCTGTCCCAGGCATCCAAGGAAAGATTTCAAAGATCTGCCAAACATATGGGTCACGCCCGAAATTTGGAAACCCCTACATTACCCTCAGTATGAGGGACATCAATAATAAGTGGGATACTgtgagctacctggctttatgctaagtgagagttctattgtggcaatacta Alignment from Spaln_nt2Genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctacaggcaaatatggataatgcatcacctttcctttgtctccagAGCCTACTAACAGCACATGAACAATTCAAAGCAACTTTACCTGAAGCTGATCGAGAGCCAGGGGCTGTCCCAGGCATCCAAGGAAAGATTTCAAAGATCTGCCAAACATATGGGTCACGCCCGAAATTTGGAAACCCCTACATTACCCTCAGTATGAGGGACATCAATAATAAGTGGGATACTgtgagctacctggctttatgctaagtgagagttctattgtggcaatacta Alignment from Pairagon AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctacaggcaaatatggataatgcatcacctttcctttgtctccagAGCCTACTAACAGCACATGAACAATTCAAAGCAACTTTACCTGAAGCTGATCGAGAGCCAGGGGCTGTCCCAGGCATCCAAGGAAAGATTTCAAAGATCTGCCAAACATATGGGTCACGCCCGAAATTTGGAAACCCCTACATTACCCTCAGTATGAGGGACATCAATAATAAGTGGGATACTgtgagctacctggctttatgctaagtgagagttctattgtggcaatacta Alignment from Exonerate_protein2genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctacaggcaaatatggataatgcatcacctttcctttgtctccagAGCCTACTAACAGCACATGAACAATTCAAAGCAACTTTACCTGAAGCTGATCGAGAGCCAGGGGCTGTCCCAGGCATCCAAGGAAAGATTTCAAAGATCTGCCAAACATATGGGTCACGCCCGAAATTTGGAAACCCCTACATTACCCTCAGTATGAGGGACATCAATAATAAGTGGGATACTgtgagctacctggctttatgctaagtgagagttctattgtggcaatacta Alignment from Exonerate_coding2genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACAGTCAGAAAGCTG catacctacaggcaaatatggataatgcatcacctttcctttgtctccagAGCCTACTAACAGCACATGAACAATTCAAAGCAACTTTACCTGAAGCTGATCGAGAGCCAGGGGCTGTCCCAGGCATCCAAGGAAAGATTTCAAAGATCTGCCAAACATATGGGTCACGCCCGAAATTTGGAAACCCCTACATTACCCTCAGTATGAGGGACATCAATAATAAGTGGGATACTGTGAGCTACCTGgctttatgctaagtgagagttctattgtggcaatacta Alignment from GeneWise AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacctacaggcaaatatggataatgcatcacctttcctttgtctccagAGCCTACTAACAGCACATGAACAATTCAAAGCAACTTTACCTGAAGCTGATCGAGAGCCAGGGGCTGTCCCAGGCATCCAAGGAAAGATTTCAAAGATCTGCCAAACATATGGGTCACGCCCGAAATTTGGAAACCCCTACATTACCCTCAGTATGAGGGACATCAATAATAAGTGGGATACTgtgagctacctggctttatgctaagtgagagttctattgtggcaatacta #### Actn3_ID700_10 --> 0 - 0 Original Alignment CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG acgtcacctgttgcccattctgcccctaatgttgtctccctttggtgcagCTGTTAGAGTGGAATTGCCGCACCTTA------------AACCATGTAGCTGAATCTAGCATG------------CAG---CTGGAGGACTTCCAAGACTATCAACACCTACGAAAGCCACCCTGTTTCCAAGAGACATGCCAGCTAGAGATCAACTTTAACATGCTGCAGGCTAAGTTGCGTCTGAGTCACCAACCTGCCTTCATGCCCTCTGAAGGCAAC------TCAgtaaggaggtattctgcaagttccaactctgcctacatgcctacaaccct Alignment from CESAR CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG acgtcacctgttgcccattctgcccctaatgttgtctccctttggtgcagCTGTTAGAGTGGAATTGCCGCACCTTA------------AACCATGTAGCTGAATCTAGCATG---------------CAGCTGGAGGACTTCCAAGACTATCAACACCTACGAAAGCCACCCTGTTTCCAAGAGACATGCCAGCTAGAGATCAACTTTAACATGCTGCAGGCTAAGTTGCGTCTGAGTCACCAACCTGCCTTCATGCCCTCTGAAGGCAAC------TCAgtaaggaggtattctgcaagttccaactctgcctacatgcctacaaccct Alignment from Spaln_aa2Genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG acgtcacctgttgcccattctgcccctaatgttgtctccctttggtgcagCTGTTAGAGTGGAATTGCCGCACCTTA------------AACCATGTAGCTGAATCTAGCATG---------------CAGCTGGAGGACTTCCAAGACTATCAACACCTACGAAAGCCACCCTGTTTCCAAGAGACATGCCAGCTAGAGATCAACTTTAACATGCTGCAGGCTAAGTTGCGTCTGAGTCACCAACCTGCCTTCATGCCCTCTGAAGGCAAC------TCAgtaaggaggtattctgcaagttccaactctgcctacatgcctacaaccct Alignment from Spaln_nt2Genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTG acgtcacctgttgcccattctgcccctaatgttgtctccctttggtgcagCTGTTAGAGTGGAATTGCCGCACCTT------------AAACCATGTAGCTGAATCTAGCATG---------------CAGCTGGAGGACTTCCAAGACTATCAACACCTACGAAAGCCACCCTGTTTCCAAGAGACATGCCAGCTAGAGATCAACTTTAACATGCTGCAGGCTAAGTTGCGTCTGAGTCACCAACCTGCCTTCATGCCCTCTGAAGGCAACTCAgtaaggaggtattctgcaagttccaactctgcctacatgcctacaaccct Alignment from Pairagon CTGTTGGAGTGGATCCGCCGCAC--------------------------TGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG acgtcacctgttgcccattctgcccctaatgttgtctccctttggtgcagCTGTTAGAGTGGAATTGCCGCACCTTAAACCATGTAGCTGAATCTAGCATGC-----------------------------------------------------AGCTGGAGGACTTCCAAGACTATCAACACCTACGAAAGCCACCCTGTTTCCAAGAGACATGCCAGCTAGAGATCAACTTTAACATGCTGCAGGCTAAGTTGCGTCTGAGTCACCAACCTGCCTTCATGCCCTCTGAAGGCAA------CTCAgtaaggaggtattctgcaagttccaactctgcctacatgcctacaaccct Alignment from Exonerate_protein2genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG acgtcacctgttgcccattctgcccctaaTGTTGTCTCCCTTTGGTGCAGCTGTTAGAGTGGAATTGCCGCACCTTAAACCATGTAGCTGAATCTAGCATGCAG------CTGGAGGACTTCCAAGACTATCAACACCTACGAAAGCCACCCTGTTTCCAAGAGACATGCCAGCTAGAGATCAACTTTAACATGCTGCAGGCTAAGTTGCGTCTGAGTCACCAACCTGCCTTCATGCCCTCTGAAGGCAACTCAGTAAGGaggtattctgcaagttccaactctgcctacatgcctacaaccct Alignment from Exonerate_coding2genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG acgtcacctgttgcccattctgcccctaaTGTTGTCTCCCTTTGGTGCAGCTGTTAGAGTGGAATTGCCGCACCTTAAACCATGTAGCTGAATCTAGCATGCAG------CTGGAGGACTTCCAAGACTATCAACACCTACGAAAGCCACCCTGTTTCCAAGAGACATGCCAGCTAGAGATCAACTTTAACATGCTGCAGGCTAAGTTGCGTCTGAGTCACCAACCTGCCTTCATGCCCTCTGAAGGCAACTCAGTAAGGaggtattctgcaagttccaactctgcctacatgcctacaaccct Alignment from GeneWise CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG acgtcacctgttgcccattctgcccctaatgttgtctccctttggtgcagCTGTTAGAGTGGAATTGCCGCACCTTA------------AACCATGTAGCTGAATCTAGCATG---------------CAGCTGGAGGACTTCCAAGACTATCAACACCTACGAAAGCCACCCTGTTTCCAAGAGACATGCCAGCTAGAGATCAACTTTAACATGCTGCAGGCTAAGTTGCGTCTGAGTCACCAACCTGCCTTCATGCCCTCTGAAGGCAAC------TCAgtaaggaggtattctgcaagttccaactctgcctacatgcctacaaccct #### Actn3_ID704_6 --> 1 - 0 Original Alignment cTGGAAGGATGGCCTGGCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG gtacacctgtactgtaactgcttggcttgccaacttgttgctcattacagcTGGAAGGATGGGCTAGCCCTTTGTGCCCTCACTCAGCGGCACTGTCCAGATCTTATTGATTATGCAAAGCTTTATAAGgtaagttgatacaattaatatctcagtagccataatgcatatctctgcag Alignment from CESAR cTGGAAGGATGGCCTGGCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG gtacacctgtactgtaactgcttggcttgccaacttgttgctcattacagcTGGAAGGATGGGCTAGCCCTTTGTGCCCTCACTCAGCGGCACTGTCCAGATCTTATTGATTATGCAAAGCTTTATAAGgtaagttgatacaattaatatctcagtagccataatgcatatctctgcag Alignment from Spaln_aa2Genome CTGGAAGGATGGCCTGGCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG gtacacctgtactgtaactgcttggcttgccaacttgttgctcattacagCTGGAAGGATGGGCTAGCCCTTTGTGCCCTCACTCAGCGGCACTGTCCAGATCTTATTGATTATGCAAAGCTTTATAAGgtaagttgatacaattaatatctcagtagccataatgcatatctctgcag Alignment from Spaln_nt2Genome CTGGAAGGATGGCCTGGCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG gtacacctgtactgtaactgcttggcttgccaacttgttgctcattacagCTGGAAGGATGGGCTAGCCCTTTGTGCCCTCACTCAGCGGCACTGTCCAGATCTTATTGATTATGCAAAGCTTTATAAGgtaagttgatacaattaatatctcagtagccataatgcatatctctgcag Alignment from Pairagon CTGGAAGGATGGCCTGGCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG gtacacctgtactgtaactgcttggcttgccaacttgttgctcattacagCTGGAAGGATGGGCTAGCCCTTTGTGCCCTCACTCAGCGGCACTGTCCAGATCTTATTGATTATGCAAAGCTTTATAAGgtaagttgatacaattaatatctcagtagccataatgcatatctctgcag Alignment from Exonerate_protein2genome CTGGAAGGATGGCCTGGCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG gtacacctgtactgtaactgcttggcttgccaacttgttgctcattacagCTGGAAGGATGGGCTAGCCCTTTGTGCCCTCACTCAGCGGCACTGTCCAGATCTTATTGATTATGCAAAGCTTTATAAGgtaagttgatacaattaatatctcagtagccataatgcatatctctgcag Alignment from Exonerate_coding2genome CTGGAAGGATGGCCTGGCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG gtacacctgtactgtaactgcttggcttgccaacttgttgctcattacagCTGGAAGGATGGGCTAGCCCTTTGTGCCCTCACTCAGCGGCACTGTCCAGATCTTATTGATTATGCAAAGCTTTATAAGgtaagttgatacaattaatatctcagtagccataatgcatatctctgcag Alignment from GeneWise CTGGAAGGATGGCCTGGCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG gtacacctgtactgtaactgcttggcttgccaacttgttgctcattacagCTGGAAGGATGGGCTAGCCCTTTGTGCCCTCACTCAGCGGCACTGTCCAGATCTTATTGATTATGCAAAGCTTTATAAGgtaagttgatacaattaatatctcagtagccataatgcatatctctgcag #### Actr1a_ID9870_10 --> 0 - 2 Original Alignment ATATCTGCACCCCAGGAGAGACTGTATTCCACATGGATTgg attatgtctgatgtggccaggagtagaatgacagtctccgttctccccagATATCTGCTCCCCAGGAGCAGCTATATTCCACATGGATAgggtcagtggccatgaatagggtctagggtcattattatagagtaagataac Alignment from CESAR ATATCTGCACCCCAGGAGAGACTGTATTCCACATGGATTgg attatgtctgatgtggccaggagtagaatgacagtctccgttctccccagATATCTGCTCCCCAGGAGCAGCTATATTCCACATGGATAgggtcagtggccatgaatagggtctagggtcattattatagagtaagataac Alignment from Spaln_aa2Genome ATATCTGCACCCCAGGAGAGACTGTATTCCACATGGATTGG attatgtctgatgtggccaggagtagaatgacagtctccgttctccccagATATCTGCTCCCCAGGAGCAGCTATATTCCACATGGATAGGgtcagtggccatgaatagggtctagggtcattattatagagtaagataac Alignment from Spaln_nt2Genome ATATCTGCACCCCAGGAGAGACTGTATTCCACATGGATTGG attatgtctgatgtggccaggagtagaatgacagtctccgttctccccagATATCTGCTCCCCAGGAGCAGCTATATTCCACATGGATAGGgtcagtggccatgaatagggtctagggtcattattatagagtaagataac Alignment from Pairagon ATATCTGCACCCCAGGAGAGACTGTATTCCACATGGATTGG attatgtctgatgtggccaggagtagaatgacagtctccgttctccccagATATCTGCTCCCCAGGAGCAGCTATATTCCACATGGATAGGgtcagtggccatgaatagggtctagggtcattattatagagtaagataac Alignment from Exonerate_protein2genome ATATCTGCACCCCAGGAGAGACTGTATTCCACATGGATTGG attatgtctgatgtggccaggagtagaatgacagtctccgttctccccagATATCTGCTCCCCAGGAGCAGCTATATTCCACATGGATAGGgtcagtggccatgaatagggtctagggtcattattatagagtaagataac Alignment from Exonerate_coding2genome ATATCTGCACCCCAGGAGAGACTGTATTCCACATGGATTGG attatgtctgatgtggccaggagtagaatgacagtctccgttctccccagATATCTGCTCCCCAGGAGCAGCTATATTCCACATGGATAGGgtcagtggccatgaatagggtctagggtcattattatagagtaagataac Alignment from GeneWise ATATCTGCACCCCAGGAGAGACTGTATTCCACATGGATTGG attatgtctgatgtggccaggagtagaatgacagtctccgttctccccagATATCTGCTCCCCAGGAGCAGCTATATTCCACATGGATAGGgtcagtggccatgaatagggtctagggtcattattatagagtaagataac #### Actr1a_ID9878_2 --> 0 - 2 Original Alignment GGATCCGGTGTGATTAAAGCTGGCTTTGCTGGTGATCAGATCCCCAAATACTGCTTTCCAAACta gtgatttgaatgagtgaacagtgtctgatctccccacctcctttggtcagGGATCAGGTGTGATAAAATCTGGCTTTGCTGGTGACCAGATCCCCAAGTACTGCTTTCCAAACtagtaaattggtctaggtagagctggcacattcacataggtagagctggcac Alignment from CESAR GGATCCGGTGTGATTAAAGCTGGCTTTGCTGGTGATCAGATCCCCAAATACTGCTTTCCAAACta gtgatttgaatgagtgaacagtgtctgatctccccacctcctttggtcagGGATCAGGTGTGATAAAATCTGGCTTTGCTGGTGACCAGATCCCCAAGTACTGCTTTCCAAACtagtaaattggtctaggtagagctggcacattcacataggtagagctggcac Alignment from Spaln_aa2Genome GGATCCGGTGTGATTAAAGCTGGCTTTGCTGGTGATCAGATCCCCAAATACTGCTTTCCAAACTA gtgatttgaatgagtgaacagtgtctgatctccccacctcctttggtcagGGATCAGGTGTGATAAAATCTGGCTTTGCTGGTGACCAGATCCCCAAGTACTGCTTTCCAAACTAgtaaattggtctaggtagagctggcacattcacataggtagagctggcac Alignment from Spaln_nt2Genome GGATCCGGTGTGATTAAAGCTGGCTTTGCTGGTGATCAGATCCCCAAATACTGCTTTCCAAACTA gtgatttgaatgagtgaacagtgtctgatctccccacctcctttggtcagGGATCAGGTGTGATAAAATCTGGCTTTGCTGGTGACCAGATCCCCAAGTACTGCTTTCCAAACTAgtaaattggtctaggtagagctggcacattcacataggtagagctggcac Alignment from Pairagon GGATCCGGTGTGATTAAAGCTGGCTTTGCTGGTGATCAGATCCCCAAATACTGCTTTCCAAACTA gtgatttgaatgagtgaacagtgtctgatctccccacctcctttggtcagGGATCAGGTGTGATAAAATCTGGCTTTGCTGGTGACCAGATCCCCAAGTACTGCTTTCCAAACTAgtaaattggtctaggtagagctggcacattcacataggtagagctggcac Alignment from Exonerate_protein2genome GGATCCGGTGTGATTAAAGCTGGCTTTGCTGGTGATCAGATCCCCAAATACTGCTTTCCAAACTA gtgatttgaatgagtgaacagtgtctgatctccccacctcctttggtcagGGATCAGGTGTGATAAAATCTGGCTTTGCTGGTGACCAGATCCCCAAGTACTGCTTTCCAAACTAgtaaattggtctaggtagagctggcacattcacataggtagagctggcac Alignment from Exonerate_coding2genome GGATCCGGTGTGATTAAAGCTGGCTTTGCTGGTGATCAGATCCCCAAATACTGCTTTCCAAACTA gtgatttgaatgagtgaacagtgtctgatctccccacctcctttggtcagGGATCAGGTGTGATAAAATCTGGCTTTGCTGGTGACCAGATCCCCAAGTACTGCTTTCCAAACTAgtaaattggtctaggtagagctggcacattcacataggtagagctggcac Alignment from GeneWise GGATCCGGTGTGATTAAAGCTGGCTTTGCTGGTGATCAGATCCCCAAATACTGCTTTCCAAACTA gtgatttgaatgagtgaacagtgtctgatctccccacctcctttggtcagGGATCAGGTGTGATAAAATCTGGCTTTGCTGGTGACCAGATCCCCAAGTACTGCTTTCCAAACTAgtaaattggtctaggtagagctggcacattcacataggtagagctggcac #### Add3_ID11213_5 --> 0 - 0 Original Alignment GTGAAAGTCAACATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCGCATGCTGCCATCTATTCAACACGCCCCGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCG aaacctgtattgtgttagaaaacgtaaattgttcaatgcttgttttccagGTAAAAGTGAATATAATTGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAGATTGACCACACGGGCTTCAGCCCCCATGCTGCCATCTATTCAATGCGCCCTGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCAgtgagtaagccacatatgcctgtagatttccaatactctgggggctccat Alignment from CESAR GTGAAAGTCAACATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCGCATGCTGCCATCTATTCAACACGCCCCGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCG aaacctgtattgtgttagaaaacgtaaattgttcaatgcttgttttccagGTAAAAGTGAATATAATTGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAGATTGACCACACGGGCTTCAGCCCCCATGCTGCCATCTATTCAATGCGCCCTGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCAgtgagtaagccacatatgcctgtagatttccaatactctgggggctccat Alignment from Spaln_aa2Genome GTGAAAGTCAACATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCGCATGCTGCCATCTATTCAACACGCCCCGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCG aaacctgtattgtgttagaaaacgtaaattgttcaatgcttgttttccagGTAAAAGTGAATATAATTGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAGATTGACCACACGGGCTTCAGCCCCCATGCTGCCATCTATTCAATGCGCCCTGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCAgtgagtaagccacatatgcctgtagatttccaatactctgggggctccat Alignment from Spaln_nt2Genome GTGAAAGTCAACATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCGCATGCTGCCATCTATTCAACACGCCCCGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCG aaacctgtattgtgttagaaaacgtaaattgttcaatgcttgttttccagGTAAAAGTGAATATAATTGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAGATTGACCACACGGGCTTCAGCCCCCATGCTGCCATCTATTCAATGCGCCCTGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCAgtgagtaagccacatatgcctgtagatttccaatactctgggggctccat Alignment from Pairagon GTGAAAGTCAACATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCGCATGCTGCCATCTATTCAACACGCCCCGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCG aaacctgtattgtgttagaaaacgtaaattgttcaatgcttgttttccagGTAAAAGTGAATATAATTGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAGATTGACCACACGGGCTTCAGCCCCCATGCTGCCATCTATTCAATGCGCCCTGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCAgtgagtaagccacatatgcctgtagatttccaatactctgggggctccat Alignment from Exonerate_protein2genome GTGAAAGTCAACATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCGCATGCTGCCATCTATTCAACACGCCCCGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCG aaacctgtattgtgttagaaaacgtaaattgttcaatgcttgttttccagGTAAAAGTGAATATAATTGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAGATTGACCACACGGGCTTCAGCCCCCATGCTGCCATCTATTCAATGCGCCCTGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCAgtgagtaagccacatatgcctgtagatttccaatactctgggggctccat Alignment from Exonerate_coding2genome GTGAAAGTCAACATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCGCATGCTGCCATCTATTCAACACGCCCCGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCG aaacctgtattgtgttagaaaacgtaaattgttcaatgcttgttttccagGTAAAAGTGAATATAATTGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAGATTGACCACACGGGCTTCAGCCCCCATGCTGCCATCTATTCAATGCGCCCTGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCAgtgagtaagccacatatgcctgtagatttccaatactctgggggctccat Alignment from GeneWise GTGAAAGTCAACATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCGCATGCTGCCATCTATTCAACACGCCCCGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCG aaacctgtattgtgttagaaaacgtaaattgttcaatgcttgttttccagGTAAAAGTGAATATAATTGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAGATTGACCACACGGGCTTCAGCCCCCATGCTGCCATCTATTCAATGCGCCCTGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCAgtgagtaagccacatatgcctgtagatttccaatactctgggggctccat #### Add3_ID11218_10 --> 0 - 0 Original Alignment TGGATGAAAGCAGAAGACTCCTCTAAAGTCAGTAGTGGGACACCGATCAAAATTGAAGACCCCAATCAGTTTGTTCCTTTAAACACAAACCCGACGGAGGTGCTAGAAAAGAGAAATAAG ctatgcagaggtgcaatttatcataaattgaaatgttttttcccttttagTGGATGAAAGCGGAAGACCCCTCTAAGGTTAGCAGTGGGACCCCAATCAGAATTGAAGACCCCAATCAGTTTGTTCCCTTAAACACAAACCCGATGGAGGTGCTAGAAAAAAGAAATAAAgtacggaattgcactcacattgtaaggtgatctttttgtggcattagtag Alignment from CESAR TGGATGAAAGCAGAAGACTCCTCTAAAGTCAGTAGTGGGACACCGATCAAAATTGAAGACCCCAATCAGTTTGTTCCTTTAAACACAAACCCGACGGAGGTGCTAGAAAAGAGAAATAAG ctatgcagaggtgcaatttatcataaattgaaatgttttttcccttttagTGGATGAAAGCGGAAGACCCCTCTAAGGTTAGCAGTGGGACCCCAATCAGAATTGAAGACCCCAATCAGTTTGTTCCCTTAAACACAAACCCGATGGAGGTGCTAGAAAAAAGAAATAAAgtacggaattgcactcacattgtaaggtgatctttttgtggcattagtag Alignment from Spaln_aa2Genome TGGATGAAAGCAGAAGACTCCTCTAAAGTCAGTAGTGGGACACCGATCAAAATTGAAGACCCCAATCAGTTTGTTCCTTTAAACACAAACCCGACGGAGGTGCTAGAAAAGAGAAATAAG ctatgcagaggtgcaatttatcataaattgaaatgttttttcccttttagTGGATGAAAGCGGAAGACCCCTCTAAGGTTAGCAGTGGGACCCCAATCAGAATTGAAGACCCCAATCAGTTTGTTCCCTTAAACACAAACCCGATGGAGGTGCTAGAAAAAAGAAATAAAgtacggaattgcactcacattgtaaggtgatctttttgtggcattagtag Alignment from Spaln_nt2Genome TGGATGAAAGCAGAAGACTCCTCTAAAGTCAGTAGTGGGACACCGATCAAAATTGAAGACCCCAATCAGTTTGTTCCTTTAAACACAAACCCGACGGAGGTGCTAGAAAAGAGAAATAAG ctatgcagaggtgcaatttatcataaattgaaatgttttttcccttttagTGGATGAAAGCGGAAGACCCCTCTAAGGTTAGCAGTGGGACCCCAATCAGAATTGAAGACCCCAATCAGTTTGTTCCCTTAAACACAAACCCGATGGAGGTGCTAGAAAAAAGAAATAAAgtacggaattgcactcacattgtaaggtgatctttttgtggcattagtag Alignment from Pairagon TGGATGAAAGCAGAAGACTCCTCTAAAGTCAGTAGTGGGACACCGATCAAAATTGAAGACCCCAATCAGTTTGTTCCTTTAAACACAAACCCGACGGAGGTGCTAGAAAAGAGAAATAAG ctatgcagaggtgcaatttatcataaattgaaatgttttttcccttttagTGGATGAAAGCGGAAGACCCCTCTAAGGTTAGCAGTGGGACCCCAATCAGAATTGAAGACCCCAATCAGTTTGTTCCCTTAAACACAAACCCGATGGAGGTGCTAGAAAAAAGAAATAAAgtacggaattgcactcacattgtaaggtgatctttttgtggcattagtag Alignment from Exonerate_protein2genome TGGATGAAAGCAGAAGACTCCTCTAAAGTCAGTAGTGGGACACCGATCAAAATTGAAGACCCCAATCAGTTTGTTCCTTTAAACACAAACCCGACGGAGGTGCTAGAAAAGAGAAATAAG ctatgcagaggtgcaatttatcataaattgaaatgttttttcccttttagTGGATGAAAGCGGAAGACCCCTCTAAGGTTAGCAGTGGGACCCCAATCAGAATTGAAGACCCCAATCAGTTTGTTCCCTTAAACACAAACCCGATGGAGGTGCTAGAAAAAAGAAATAAAgtacggaattgcactcacattgtaaggtgatctttttgtggcattagtag Alignment from Exonerate_coding2genome TGGATGAAAGCAGAAGACTCCTCTAAAGTCAGTAGTGGGACACCGATCAAAATTGAAGACCCCAATCAGTTTGTTCCTTTAAACACAAACCCGACGGAGGTGCTAGAAAAGAGAAATAAG ctatgcagaggtgcaatttatcataaattgaaatgttttttcccttttagTGGATGAAAGCGGAAGACCCCTCTAAGGTTAGCAGTGGGACCCCAATCAGAATTGAAGACCCCAATCAGTTTGTTCCCTTAAACACAAACCCGATGGAGGTGCTAGAAAAAAGAAATAAAgtacggaattgcactcacattgtaaggtgatctttttgtggcattagtag Alignment from GeneWise TGGATGAAAGCAGAAGACTCCTCTAAAGTCAGTAGTGGGACACCGATCAAAATTGAAGACCCCAATCAGTTTGTTCCTTTAAACACAAACCCGACGGAGGTGCTAGAAAAGAGAAATAAG ctatgcagaggtgcaatttatcataaattgaaatgttttttcccttttagTGGATGAAAGCGGAAGACCCCTCTAAGGTTAGCAGTGGGACCCCAATCAGAATTGAAGACCCCAATCAGTTTGTTCCCTTAAACACAAACCCGATGGAGGTGCTAGAAAAAAGAAATAAAgtacggaattgcactcacattgtaaggtgatctttttgtggcattagtag #### Add3_ID11220_12 --> 0 - 1 Original Alignment ACCATGCAGTTTGACGATGACGATCAGGGCCCACCAGCTCCTCCTAACCCATTCAGCCACCTCCTGGAAGGAGAACTGGAAGAGTATACGAAGACAATCGAGAGA---------AAGCAGCAAGGCCTGGACg cagatcaggcatctaatggtgagtaagaagctggtgtgtttaccttctagATGATGCAGTATGATGAAGATGATCAGGGTCCACCCACA---CCAAATCCCTTTAGCCATCTACTGGAGGGAGAACTGGATGAATATATGAAGACTATTGAAAGGCATAGACGAAAACAGCAGGGTCTGGATggtagccactagtgctatggccaaacttagtggagtgtgggccctgtccag Alignment from CESAR ACCATGCAGTTTGACGATGACGATCAGGGCCCACCAGCTCCTCCTAACCCATTCAGCCACCTCCTGGAAGGAGAACTGGAAGAGTATACGAAGACAATCGAGAGA---------AAGCAGCAAGGCCTGGACg cagatcaggcatctaatggtgagtaagaagctggtgtgtttaccttctagATGATGCAGTATGATGAAGATGATCAGGGTCCACCCACA---CCAAATCCCTTTAGCCATCTACTGGAGGGAGAACTGGATGAATATATGAAGACTATTGAAAGGCATAGACGAAAACAGCAGGGTCTGGATggtagccactagtgctatggccaaacttagtggagtgtgggccctgtccag Alignment from Spaln_aa2Genome ACCATGCAGTTTGACGATGACGATCAGGGCCCACCAGCTCCTCCTAACCCATTCAGCCACCTCCTGGAAGGAGAACTGGAAGAGTATACGAAGACAATCGAG---------AGAAAGCAGCAAGGCCTGGACG cagatcaggcatctaatggtgagtaagaagctggtgtgtttaccttctagATGATGCAGTATGATGAAGATGATCAGGGTCCACCCACA---CCAAATCCCTTTAGCCATCTACTGGAGGGAGAACTGGATGAATATATGAAGACTATTGAAAGGCATAGACGAAAACAGCAGGGTCTGGATGgtagccactagtgctatggccaaacttagtggagtgtgggccctgtccag Alignment from Spaln_nt2Genome ACCATGCAGTTTGACGATGACGATCAGGGCCCACCAGCTCCTCCTAACCCATTCAGCCACCTCCTGGAAGGAGAACTGGAAGAGTATACGAAGACAATCGAGAG---------AAAGCAGCAAGGCCTGGACG cagatcaggcatctaatggtgagtaagaagctggtgtgtttaccttctagATGATGCAGTATGATGAAGATGATCAGGGTCCAC---CCACACCAAATCCCTTTAGCCATCTACTGGAGGGAGAACTGGATGAATATATGAAGACTATTGAAAGGCATAGACGAAAACAGCAGGGTCTGGATGgtagccactagtgctatggccaaacttagtggagtgtgggccctgtccag Alignment from Pairagon ACCATGCAGTTTGACGATGACGATCAGGGCCCACCAGCTCCTCCTAACCCATTCAGCCACCTCCTGGAAGGAGAACTGGAAGAGTATACGAAGACAATCGAGA---------GAAAGCAGCAAGGCCTGGACG cagatcaggcatctaatggtgagtaagaagctggtgtgtttaccttctagATGATGCAGTATGATGAAGATGATCAGGGTCCAC---CCACACCAAATCCCTTTAGCCATCTACTGGAGGGAGAACTGGATGAATATATGAAGACTATTGAAAGGCATAGACGAAAACAGCAGGGTCTGGATGgtagccactagtgctatggccaaacttagtggagtgtgggccctgtccag Alignment from Exonerate_protein2genome ACCATGCAGTTTGACGATGACGATCAGGGCCCACCAGCTCCTCCTAACCCATTCAGCCACCTCCTGGAAGGAGAACTGGAAGAGTATACGAAGACAATCGAG---------AGAAAGCAGCAAGGCCTGGACG cagatcaggcatctaatggtgagtaagaagctggtgtgtttaccttctagATGATGCAGTATGATGAAGATGATCAGGGTCCACCCACA---CCAAATCCCTTTAGCCATCTACTGGAGGGAGAACTGGATGAATATATGAAGACTATTGAAAGGCATAGACGAAAACAGCAGGGTCTGGATGgtagccactagtgctatggccaaacttagtggagtgtgggccctgtccag Alignment from Exonerate_coding2genome ACCATGCAGTTTGACGATGACGATCAGGGCCCACCAGCTCCTCCTAACCCATTCAGCCACCTCCTGGAAGGAGAACTGGAAGAGTATACGAAGACAATCGAG---------AGAAAGCAGCAAGGCCTGGACG cagatcaggcatctaatggtgagtaagaagctggtgtgtttaccttctagATGATGCAGTATGATGAAGATGATCAGGGTCCACCCACA---CCAAATCCCTTTAGCCATCTACTGGAGGGAGAACTGGATGAATATATGAAGACTATTGAAAGGCATAGACGAAAACAGCAGGGTCTGGATGgtagccactagtgctatggccaaacttagtggagtgtgggccctgtccag Alignment from GeneWise ACCATGCAGTTTGACGATGACGATCAGGGCCCACCAGCTCCTCCTAACCCATTCAGCCACCTCCTGGAAGGAGAACTGGAAGAGTATACGAAGACAATCGAG---------AGAAAGCAGCAAGGCCTGGACG cagatcaggcatctaatggtgagtaagaagctggtgtgtttaccttctagATGATGCAGTATGATGAAGATGATCAGGGTCCACCCACA---CCAAATCCCTTTAGCCATCTACTGGAGGGAGAACTGGATGAATATATGAAGACTATTGAAAGGCATAGACGAAAACAGCAGGGTCTGGATGgtagccactagtgctatggccaaacttagtggagtgtgggccctgtccag #### Adrbk1_ID479_16 --> 0 - 0 Original Alignment TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tgccccctgccactctcccctgcaatgaactctctatctcctatatccagTATCCTCCCCCATTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaatgaacccatgtagcttgggaccccgtttccagactctgaaactgaa Alignment from CESAR TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tgccccctgccactctcccctgcaatgaactctctatctcctatatccagTATCCTCCCCCATTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaatgaacccatgtagcttgggaccccgtttccagactctgaaactgaa Alignment from Spaln_aa2Genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tgccccctgccactctcccctgcaatgaactctctatctcctatatccagTATCCTCCCCCATTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaatgaacccatgtagcttgggaccccgtttccagactctgaaactgaa Alignment from Spaln_nt2Genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tgccccctgccactctcccctgcaatgaactctctatctcctatatccagTATCCTCCCCCATTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaatgaacccatgtagcttgggaccccgtttccagactctgaaactgaa Alignment from Pairagon TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tgccccctgccactctcccctgcaatgaactctctatctcctatatccagTATCCTCCCCCATTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaatgaacccatgtagcttgggaccccgtttccagactctgaaactgaa Alignment from Exonerate_protein2genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tgccccctgccactctcccctgcaatgaactctctatctcctatatccagTATCCTCCCCCATTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaatgaacccatgtagcttgggaccccgtttccagactctgaaactgaa Alignment from Exonerate_coding2genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tgccccctgccactctcccctgcaatgaactctctatctcctatatccagTATCCTCCCCCATTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaatgaacccatgtagcttgggaccccgtttccagactctgaaactgaa Alignment from GeneWise TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tgccccctgccactctcccctgcaatgaactctctatctcctatatccagTATCCTCCCCCATTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaatgaacccatgtagcttgggaccccgtttccagactctgaaactgaa #### Adrbk1_ID484_11 --> 0 - 2 Original Alignment CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTgt gGGC cacaaggcaaccagcatgatgatgacatactctgtcactcattaccccagCCAGCTAACATTCTCCTAGAA---CATGGCCATGTGAGAATTTCTGATTTTAGCCTAGTATGTGACTTCTCCAAGAAGAGACCCCCTGCCGGGgtgtaggaacctacagactcacttcatggcttgctttttcggatacaggGGC Alignment from CESAR CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTgt gGGC cacaaggcaaccagcatgatgatgacatactctgtcactcattaccccagCCAGCTAACATTCTCCTA---GAACATGGCCATGTGAGAATTTCTGATTTTAGCCTAGTATGTGACTTCTCCAAGAAGAGACCCCCTGCCGGGgtgtaggaacctacagactcacttcaccttgcctgtcctctctttcaggGGC Alignment from Spaln_aa2Genome CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT GGGC cacaaggcaaccagcatgatgatgacatactctgtcactcattaccccagCCAGCTAACATTCTCCTA---GAACATGGCCATGTGAGAATTTCTGATTTTAGCCTAGTATGTGACTTCTCCAAGAAGAGACCCCCTGCCGGGGTgtaggaacctacagactcacttcatggcttgctttttcggatacagGGGC Alignment from Spaln_nt2Genome CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT GGGC cacaaggcaaccagcatgatgatgacatactctgtcactcattaccccagCCAGCTAACATTCTCCT---AGAACATGGCCATGTGAGAATTTCTGATTTTAGCCTAGTATGTGACTTCTCCAAGAAGAGACCCCCTGCCGGGGTgtaggaacctacagactcacttcatggcttgctttttcggatacagGGGC Alignment from Pairagon CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT GGGC cacaaggcaaccagcatgatgatgacatactctgtcactcattaccccagCCAGCTAACATTCTCCTA---GAACATGGCCATGTGAGAATTTCTGATTTTAGCCTAGTATGTGACTTCTCCAAGAAGAGACCCCCTGCCGGGGTgtaggaacctacagactcacttcatggcttgctttttcggatacagGGGC Alignment from Exonerate_protein2genome CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT GGGC cacaaggcaaccagcatgatgatgacatactctgtcactcattaccccagCCAGCTAACATTCTCCTA---GAACATGGCCATGTGAGAATTTCTGATTTTAGCCTAGTATGTGACTTCTCCAAGAAGAGACCCCCTGCCGGGGTgtaggaacctacagactcacttcatggcttgctttttcggatacagGGGC Alignment from Exonerate_coding2genome CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT GGGC cacaaggcaaccagcatgatgatgacatactctgtcactcattaccccagCCAGCTAACATTCTCCTA---GAACATGGCCATGTGAGAATTTCTGATTTTAGCCTAGTATGTGACTTCTCCAAGAAGAGACCCCCTGCCGGGGTgtaggaacctacagactcacttcatggcttgctttttcggatacagGGGC Alignment from GeneWise CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT GGGC cacaaggcaaccagcatgatgatgacatactctgtcactcattaccccagCCAGCTAACATTCTCCTA---GAACATGGCCATGTGAGAATTTCTGATTTTAGCCTAGTATGTGACTTCTCCAAGAAGAGACCCCCTGCCGGGGTgtaggaacctacagactcacttcatggcttgctttttcggatacagGGGC #### Adrbk1_ID485_10 --> 2 - 0 Original Alignment CATGAACg gtGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATggtaagcaagtctcgagactgggtctctgcttgttcctctcagggGTAGAGTTGCATTATCACCTCTCACAGCATGGAGTCTTCTCAGAAGCTGATATGTGCCTATACGCTGCTGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATCTAAAGgtaagttagactcacccctattcttctccttacaactcacagcacaccat Alignment from CESAR CATGAACg gtGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATggtactcaagtctcgagactgggtctctgcttgttcctctcagggGTAGAGTTGCATTATCACCTCTCACAGCATGGAGTCTTCTCAGAAGCTGATATGTGCCTATACGCTGCTGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATCTAAAGgtaagttagactcacccctattcttctccttacaactcacagcacaccat Alignment from Spaln_aa2Genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtaagcaagtctcgagactgggtctctgcttgttcctctcagGGGTAGAGTTGCATTATCACCTCTCACAGCATGGAGTCTTCTCAGAAGCTGATATGTGCCTATACGCTGCTGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATCTAAAGgtaagttagactcacccctattcttctccttacaactcacagcacaccat Alignment from Spaln_nt2Genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtaagcaagtctcgagactgggtctctgcttgttcctctcagGGGTAGAGTTGCATTATCACCTCTCACAGCATGGAGTCTTCTCAGAAGCTGATATGTGCCTATACGCTGCTGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATCTAAAGgtaagttagactcacccctattcttctccttacaactcacagcacaccat Alignment from Pairagon CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtaagcaagtctcgagactgggtctctgcttgttcctctcagGGGTAGAGTTGCATTATCACCTCTCACAGCATGGAGTCTTCTCAGAAGCTGATATGTGCCTATACGCTGCTGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATCTAAAGgtaagttagactcacccctattcttctccttacaactcacagcacaccat Alignment from Exonerate_protein2genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtaagcaagtctcgagactgggtctctgcttgttcctctcagGGGTAGAGTTGCATTATCACCTCTCACAGCATGGAGTCTTCTCAGAAGCTGATATGTGCCTATACGCTGCTGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATCTAAAGgtaagttagactcacccctattcttctccttacaactcacagcacaccat Alignment from Exonerate_coding2genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtaagcaagtctcgagactgggtctctgcttgttcctctcagGGGTAGAGTTGCATTATCACCTCTCACAGCATGGAGTCTTCTCAGAAGCTGATATGTGCCTATACGCTGCTGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATCTAAAGgtaagttagactcacccctattcttctccttacaactcacagcacaccat Alignment from GeneWise CATGAACGGTGGG------------------------------------------GACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGGTAAGCAAGTCTCGAGACTGGGTCTCTGCTTGTTCCTCTCAGGGGTAGAGTTGCATTATCACCTCTCACAGCATGGAGTCTTCTCAGAAGCTGATATGTGCCTATACGCTGCTGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATCTAAAGgtaagttagactcacccctattcttctccttacaactcacagcacaccat #### Adrbk1_ID487_8 --> 1 - 0 Original Alignment gTACGCCATGAAGTGTCTG---GACAAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG acccaccccatcaattgtgctgtgctactttgtttcttgcttctttacaggCATGCTAAGAGATGTTTGGAAAACAAGAAACACATTAAGATGAAACAAGGAGAGACACTGGCCCTGAATACGCGGATTATGCTATCACTTGTGAGCACTGGTgtgagtcaagtggtcaggtaacccccactcagttcgccttctataagaca Alignment from CESAR gTACGCCATGAAGTGTCTGGAC---AAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG acccaccccatcaattgtgctgtgctactttgtttcttgcttctttacaggCATGCTAAGAGATGTTTGGAAAACAAGAAACACATTAAGATGAAACAAGGAGAGACACTGGCCCTGAATACGCGGATTATGCTATCACTTGTGAGCACTGGTgtgagtcaagtggtcaggtaacccccactcagttcgccttctataagaca Alignment from Spaln_aa2Genome GTACGCCATGAAGTGTCTGGAC---AAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG acccaccccatcaattgtgctgtgctactttgtttcttgcttctttacagGCATGCTAAGAGATGTTTGGAAAACAAGAAACACATTAAGATGAAACAAGGAGAGACACTGGCCCTGAATACGCGGATTATGCTATCACTTGTGAGCACTGGTgtgagtcaagtggtcaggtaacccccactcagttcgccttctataagaca Alignment from Spaln_nt2Genome GTACGCCATGAAGTGTCTGGA---CAAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG acccaccccatcaattgtgctgtgctactttgtttcttgcttctttacagGCATGCTAAGAGATGTTTGGAAAACAAGAAACACATTAAGATGAAACAAGGAGAGACACTGGCCCTGAATACGCGGATTATGCTATCACTTGTGAGCACTGGTgtgagtcaagtggtcaggtaacccccactcagttcgccttctataagaca Alignment from Pairagon GTACGCCATGAAGTGTCTGG---ACAAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG acccaccccatcaattgtgctgtgctactttgtttcttgcttctttacagGCATGCTAAGAGATGTTTGGAAAACAAGAAACACATTAAGATGAAACAAGGAGAGACACTGGCCCTGAATACGCGGATTATGCTATCACTTGTGAGCACTGGTgtgagtcaagtggtcaggtaacccccactcagttcgccttctataagaca Alignment from Exonerate_protein2genome GTACGCCATGAAGTGTCTGGAC---AAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG acccaccccatcaattgtgctgtgctactttgtttcttgcttctttacagGCATGCTAAGAGATGTTTGGAAAACAAGAAACACATTAAGATGAAACAAGGAGAGACACTGGCCCTGAATACGCGGATTATGCTATCACTTGTGAGCACTGGTgtgagtcaagtggtcaggtaacccccactcagttcgccttctataagaca Alignment from Exonerate_coding2genome acccaccccatcaattgtgctgtgctactttgtttcttgcttctttacaggcatgctaagagatgtttggaaaacaagaaacacattaagatgaaacaaggagagacactggccctgaatacgcggattatgctatcacttgtgagcactggtgtgagtcaagtggtcaggtaacccccactcagttcgccttctataagaca Alignment from GeneWise GTACGCCATGAAGTGTCTGGAC---AAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG acccaccccatcaattgtgctgtgctactttgtttcttgcttctttacagGCATGCTAAGAGATGTTTGGAAAACAAGAAACACATTAAGATGAAACAAGGAGAGACACTGGCCCTGAATACGCGGATTATGCTATCACTTGTGAGCACTGGTgtgagtcaagtggtcaggtaacccccactcagttcgccttctataagaca #### Adrbk1_ID489_6 --> 1 - 0 Original Alignment tGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC aatcaacagtttggcatgcctagtagtgtcctccatccccctccactcagtGATCAGTTCACACATTTCTGTCAATGGAAGAACATTGAACTTAACATTCATgtaaacaggagtacttcatgaatgcaactctacgtgtagtatgggtgggc Alignment from CESAR tGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC aatcaacagtttggcatgcctagtagtgtcctccatccccctccactcagtGATCAGTTCACACATTTCTGTCAATGGAAGAACATTGAACTTAACATTCATgtaaacaggagtacttcatgaatgcaactctacgtgtagtatgggtgggc Alignment from Spaln_aa2Genome TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC aatcaacagtttggcatgcctagtagtgtcctccatccccctccactcagTGATCAGTTCACACATTTCTGTCAATGGAAGAACATTGAACTTAACATTCATgtaaacaggagtacttcatgaatgcaactctacgtgtagtatgggtgggc Alignment from Spaln_nt2Genome TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC aatcaacagtttggcatgcctagtagtgtcctccatccccctccactcagTGATCAGTTCACACATTTCTGTCAATGGAAGAACATTGAACTTAACATTCATgtaaacaggagtacttcatgaatgcaactctacgtgtagtatgggtgggc Alignment from Pairagon TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC aatcaacagtttggcatgcctagtagtgtcctccatccccctccactcagTGATCAGTTCACACATTTCTGTCAATGGAAGAACATTGAACTTAACATTCATgtaaacaggagtacttcatgaatgcaactctacgtgtagtatgggtgggc Alignment from Exonerate_protein2genome TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC aatcaacagtttggcatgcctagtagtgtcctccatccccctccactcagTGATCAGTTCACACATTTCTGTCAATGGAAGAACATTGAACTTAACATTCATgtaaacaggagtacttcatgaatgcaactctacgtgtagtatgggtgggc Alignment from Exonerate_coding2genome aatcaacagtttggcatgcctagtagtgtcctccatccccctccactcagtgatcagttcacacatttctgtcaatggaagaacattgaacttaacattcatgtaaacaggagtacttcatgaatgcaactctacgtgtagtatgggtgggc Alignment from GeneWise TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC aatcaacagtttggcatgcctagtagtgtcctccatccccctccactcagTGATCAGTTCACACATTTCTGTCAATGGAAGAACATTGAACTTAACATTCATgtaaacaggagtacttcatgaatgcaactctacgtgtagtatgggtgggc #### Adrbk1_ID490_5 --> 0 - 2 Original Alignment CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGag aaaccagggctagccagaatggtgcacccttttactgttactgttggcagCCTTACATTGAGGATATTTGTCAGAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGaggtaatgtggagggacttctttgcctctgcaatcagcttggtgatggttag Alignment from CESAR CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGag aaaccagggctagccagaatggtgcacccttttactgttactgttggcagCCTTACATTGAGGATATTTGTCAGAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGaggtaatgtggagggacttctttgcctctgcaatcagcttggtgatggttag Alignment from Spaln_aa2Genome CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG aaaccagggctagccagaatggtgcacccttttactgttactgttggcagCCTTACATTGAGGATATTTGTCAGAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGAGgtaatgtggagggacttctttgcctctgcaatcagcttggtgatggttag Alignment from Spaln_nt2Genome CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG aaaccagggctagccagaatggtgcacccttttactgttactgttggcagCCTTACATTGAGGATATTTGTCAGAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGAGgtaatgtggagggacttctttgcctctgcaatcagcttggtgatggttag Alignment from Pairagon CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG aaaccagggctagccagaatggtgcacccttttactgttactgttggcagCCTTACATTGAGGATATTTGTCAGAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGAGgtaatgtggagggacttctttgcctctgcaatcagcttggtgatggttag Alignment from Exonerate_protein2genome CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG aaaccagggctagccagaatggtgcacccttttactgttactgttggcagCCTTACATTGAGGATATTTGTCAGAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGAGgtaatgtggagggacttctttgcctctgcaatcagcttggtgatggttag Alignment from Exonerate_coding2genome aaaccagggctagccagaatggtgcacccttttactgttactgttggcagccttacattgaggatatttgtcagaaactccgaagggatttattccaaaagtttatagagaggtaatgtggagggacttctttgcctctgcaatcagcttggtgatggttag Alignment from GeneWise CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG aaaccagggctagccagaatggtgcacccttttactgttactgttggcagCCTTACATTGAGGATATTTGTCAGAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGAGgtaatgtggagggacttctttgcctctgcaatcagcttggtgatggttag #### Afap1l2_ID12250_13 --> 0 - 2 Original Alignment GCCAAGTCTTCAGAGGAGATGGGCCACTGGCTAGGCCTCCTGCTCTCAGAGTCGGGCTCCAAGACTGACCCGGAAGAGCTCACCTACGACTAT---GTGGATGCTGAAAGGGTTTCCTGTATTGTGAGTGCGGCCAAAACCTCTCTCtt tggtgtaccttcatccctgttcagcacctcacattatttgttcaattcagCCAAAGTCTTCAGGAGAGATGGGCCAATGGCTTGGCCTCCTGCTTTCAGAGTCAGGTTCTAAAACTGATCCACAAGAACTCATGTATGACTATGTTGTTGATGCTAAGAGGGTCTTCTGTATAGTTAGCGCAGCCAAAACATTACTGttgtaagagcaatagcactagcctttgctgttgttgtcatcttattatacac Alignment from CESAR GCCAAGTCTTCAGAGGAGATGGGCCACTGGCTAGGCCTCCTGCTCTCAGAGTCGGGCTCCAAGACTGACCCGGAAGAGCTCACCTACGACTAT---GTGGATGCTGAAAGGGTTTCCTGTATTGTGAGTGCGGCCAAAACCTCTCTCtt tggtgtaccttcatccctgttcagcacctcacattatttgttcaattcagCCAAAGTCTTCAGGAGAGATGGGCCAATGGCTTGGCCTCCTGCTTTCAGAGTCAGGTTCTAAAACTGATCCACAAGAACTCATGTATGACTATGTTGTTGATGCTAAGAGGGTCTTCTGTATAGTTAGCGCAGCCAAAACATTACTGttgtaagagcaatagcactagcctttgctgttgttgtcatcttattatacac Alignment from Spaln_aa2Genome GCCAAGTCTTCAGAGGAGATGGGCCACTGGCTAGGCCTCCTGCTCTCAGAGTCGGGCTCCAAGACTGACCCGGAAGAGCTCACCTACGACTAT---GTGGATGCTGAAAGGGTTTCCTGTATTGTGAGTGCGGCCAAAACCTCTCTCTT tggtgtaccttcatccctgttcagcacctcacattatttgttcaattcagCCAAAGTCTTCAGGAGAGATGGGCCAATGGCTTGGCCTCCTGCTTTCAGAGTCAGGTTCTAAAACTGATCCACAAGAACTCATGTATGACTATGTTGTTGATGCTAAGAGGGTCTTCTGTATAGTTAGCGCAGCCAAAACATTACTGTTgtaagagcaatagcactagcctttgctgttgttgtcatcttattatacac Alignment from Spaln_nt2Genome GCCAAGTCTTCAGAGGAGATGGGCCACTGGCTAGGCCTCCTGCTCTCAGAGTCGGGCTCCAAGACTGACCCGGAAGAGCTCACCTACGACTATGTGG---ATGCTGAAAGGGTTTCCTGTATTGTGAGTGCGGCCAAAACCTCTCTCTT tggtgtaccttcatccctgttcagcacctcacattatttgttcaattcagCCAAAGTCTTCAGGAGAGATGGGCCAATGGCTTGGCCTCCTGCTTTCAGAGTCAGGTTCTAAAACTGATCCACAAGAACTCATGTATGACTATGTTGTTGATGCTAAGAGGGTCTTCTGTATAGTTAGCGCAGCCAAAACATTACTGTTgtaagagcaatagcactagcctttgctgttgttgtcatcttattatacac Alignment from Pairagon GCCAAGTCTTCAGAGGAGATGGGCCACTGGCTAGGCCTCCTGCTCTCAGAGTCGGGCTCCAAGACTGACCCGGAAGAGCTCACCTACGACTA---TGTGGATGCTGAAAGGGTTTCCTGTATTGTGAGTGCGGCCAAAACCTCTCTCTT tggtgtaccttcatccctgttcagcacctcacattatttgttcaattcagCCAAAGTCTTCAGGAGAGATGGGCCAATGGCTTGGCCTCCTGCTTTCAGAGTCAGGTTCTAAAACTGATCCACAAGAACTCATGTATGACTATGTTGTTGATGCTAAGAGGGTCTTCTGTATAGTTAGCGCAGCCAAAACATTACTGTTgtaagagcaatagcactagcctttgctgttgttgtcatcttattatacac Alignment from Exonerate_protein2genome GCCAAGTCTTCAGAGGAGATGGGCCACTGGCTAGGCCTCCTGCTCTCAGAGTCGGGCTCCAAGACTGACCCGGAAGAGCTCACCTACGACTAT---GTGGATGCTGAAAGGGTTTCCTGTATTGTGAGTGCGGCCAAAACCTCTCTCTT tggtgtaccttcatccctgttcagcacctcacattatttgttcaattcagCCAAAGTCTTCAGGAGAGATGGGCCAATGGCTTGGCCTCCTGCTTTCAGAGTCAGGTTCTAAAACTGATCCACAAGAACTCATGTATGACTATGTTGTTGATGCTAAGAGGGTCTTCTGTATAGTTAGCGCAGCCAAAACATTACTGTTgtaagagcaatagcactagcctttgctgttgttgtcatcttattatacac Alignment from Exonerate_coding2genome GCCAAGTCTTCAGAGGAGATGGGCCACTGGCTAGGCCTCCTGCTCTCAGAGTCGGGCTCCAAGACTGACCCGGAAGAGCTCACCTACGACTAT---GTGGATGCTGAAAGGGTTTCCTGTATTGTGAGTGCGGCCAAAACCTCTCTCTT tggtgtaccttcatccctgttcagcacctcacattatttgttcaattcagCCAAAGTCTTCAGGAGAGATGGGCCAATGGCTTGGCCTCCTGCTTTCAGAGTCAGGTTCTAAAACTGATCCACAAGAACTCATGTATGACTATGTTGTTGATGCTAAGAGGGTCTTCTGTATAGTTAGCGCAGCCAAAACATTACTGTTgtaagagcaatagcactagcctttgctgttgttgtcatcttattatacac Alignment from GeneWise GCCAAGTCTTCAGAGGAGATGGGCCACTGGCTAGGCCTCCTGCTCTCAGAGTCGGGCTCCAAGACTGACCCGGAAGAGCTCACCTACGACTATGTG---GATGCTGAAAGGGTTTCCTGTATTGTGAGTGCGGCCAAAACCTCTCTCTT tggtgtaccttcatccctgttcagcacctcacattatttgttcaattcagCCAAAGTCTTCAGGAGAGATGGGCCAATGGCTTGGCCTCCTGCTTTCAGAGTCAGGTTCTAAAACTGATCCACAAGAACTCATGTATGACTATGTTGTTGATGCTAAGAGGGTCTTCTGTATAGTTAGCGCAGCCAAAACATTACTGTTgtaagagcaatagcactagcctttgctgttgttgtcatcttattatacac #### Afap1l2_ID12253_10 --> 0 - 1 Original Alignment CCAGACATAGCTGAGAAGTACCTGTCAGCAGCGGAGTACGGGATCACCATCAACGGCCACCCTGAGATCCCAGAGACCAAAGATg ttgtctttgcagtatcataaaccatttagggtcccctgtgtctccctcagTCTGATATTGCTGCAAAATACCTCTCAGCAGCAGAGTACGGAATTACCATCAATGGTCACCCTGAGATTCCAGAAACTAAAGATggtgagtcagtaaggatccccaaagtgcttttttaagagtgtaggccagcc Alignment from CESAR CCAGACATAGCTGAGAAGTACCTGTCAGCAGCGGAGTACGGGATCACCATCAACGGCCACCCTGAGATCCCAGAGACCAAAGATg ttgtctttgcagtatcataaaccatttagggtcccctgtgtctccctcagTCTGATATTGCTGCAAAATACCTCTCAGCAGCAGAGTACGGAATTACCATCAATGGTCACCCTGAGATTCCAGAAACTAAAGATggtgagtcagtaaggatccccaaagtgcttttttaagagtgtaggccagcc Alignment from Spaln_aa2Genome CCAGACATAGCTGAGAAGTACCTGTCAGCAGCGGAGTACGGGATCACCATCAACGGCCACCCTGAGATCCCAGAGACCAAAGATG ttgtctttgcagtatcataaaccatttagggtcccctgtgtctccctcagTCTGATATTGCTGCAAAATACCTCTCAGCAGCAGAGTACGGAATTACCATCAATGGTCACCCTGAGATTCCAGAAACTAAAGATGgtgagtcagtaaggatccccaaagtgcttttttaagagtgtaggccagcc Alignment from Spaln_nt2Genome CCAGACATAGCTGAGAAGTACCTGTCAGCAGCGGAGTACGGGATCACCATCAACGGCCACCCTGAGATCCCAGAGACCAAAGATG ttgtctttgcagtatcataaaccatttagggtcccctgtgtctccctcagTCTGATATTGCTGCAAAATACCTCTCAGCAGCAGAGTACGGAATTACCATCAATGGTCACCCTGAGATTCCAGAAACTAAAGATGgtgagtcagtaaggatccccaaagtgcttttttaagagtgtaggccagcc Alignment from Pairagon CCAGACATAGCTGAGAAGTACCTGTCAGCAGCGGAGTACGGGATCACCATCAACGGCCACCCTGAGATCCCAGAGACCAAAGATG ttgtctttgcagtatcataaaccatttagggtcccctgtgtctccctcagTCTGATATTGCTGCAAAATACCTCTCAGCAGCAGAGTACGGAATTACCATCAATGGTCACCCTGAGATTCCAGAAACTAAAGATGgtgagtcagtaaggatccccaaagtgcttttttaagagtgtaggccagcc Alignment from Exonerate_protein2genome CCAGACATAGCTGAGAAGTACCTGTCAGCAGCGGAGTACGGGATCACCATCAACGGCCACCCTGAGATCCCAGAGACCAAAGATG ttgtctttgcagtatcataaaccatttagggtcccctgtgtctccctcagTCTGATATTGCTGCAAAATACCTCTCAGCAGCAGAGTACGGAATTACCATCAATGGTCACCCTGAGATTCCAGAAACTAAAGATGgtgagtcagtaaggatccccaaagtgcttttttaagagtgtaggccagcc Alignment from Exonerate_coding2genome ttgtctttgcagtatcataaaccatttagggtcccctgtgtctccctcagtctgatattgctgcaaaatacctctcagcagcagagtacggaattaccatcaatggtcaccctgagattccagaaactaaagatggtgagtcagtaaggatccccaaagtgcttttttaagagtgtaggccagcc Alignment from GeneWise CCAGACATAGCTGAGAAGTACCTGTCAGCAGCGGAGTACGGGATCACCATCAACGGCCACCCTGAGATCCCAGAGACCAAAGATG ttgtctttgcagtatcataaaccatttagggtcccctgtgtctccctcagTCTGATATTGCTGCAAAATACCTCTCAGCAGCAGAGTACGGAATTACCATCAATGGTCACCCTGAGATTCCAGAAACTAAAGATGgtgagtcagtaaggatccccaaagtgcttttttaagagtgtaggccagcc #### Afap1l2_ID12255_8 --> 0 - 0 Original Alignment TGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGG caaaaggtctcttccaggagaattagatgggcctttttctctgtccccagTGCTATAAGTCATCCAAAGACCACAGTCCTCAGCTGGATGTGAACTTGCGAGGTAGCAGCATTGTGCACAAAGAGAAGCAAGTGCGGAAAAAAGGACACAAGCTCAAAATGACACCAATGAACACTGATGTTGTTGCACTTGGCCGACAGAGCAAAGACCAACCTGAGCAGTGGCTTCGGgtatatagacccactctgtacactagtcaagttggactgagtgccttgcc Alignment from CESAR TGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGG caaaaggtctcttccaggagaattagatgggcctttttctctgtccccagTGCTATAAGTCATCCAAAGACCACAGTCCTCAGCTGGATGTGAACTTGCGAGGTAGCAGCATTGTGCACAAAGAGAAGCAAGTGCGGAAAAAAGGACACAAGCTCAAAATGACACCAATGAACACTGATGTTGTTGCACTTGGCCGACAGAGCAAAGACCAACCTGAGCAGTGGCTTCGGgtatatagacccactctgtacactagtcaagttggactgagtgccttgcc Alignment from Spaln_aa2Genome TGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGG caaaaggtctcttccaggagaattagatgggcctttttctctgtccccagTGCTATAAGTCATCCAAAGACCACAGTCCTCAGCTGGATGTGAACTTGCGAGGTAGCAGCATTGTGCACAAAGAGAAGCAAGTGCGGAAAAAAGGACACAAGCTCAAAATGACACCAATGAACACTGATGTTGTTGCACTTGGCCGACAGAGCAAAGACCAACCTGAGCAGTGGCTTCGGgtatatagacccactctgtacactagtcaagttggactgagtgccttgcc Alignment from Spaln_nt2Genome TGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGG caaaaggtctcttccaggagaattagatgggcctttttctctgtccccagTGCTATAAGTCATCCAAAGACCACAGTCCTCAGCTGGATGTGAACTTGCGAGGTAGCAGCATTGTGCACAAAGAGAAGCAAGTGCGGAAAAAAGGACACAAGCTCAAAATGACACCAATGAACACTGATGTTGTTGCACTTGGCCGACAGAGCAAAGACCAACCTGAGCAGTGGCTTCGGgtatatagacccactctgtacactagtcaagttggactgagtgccttgcc Alignment from Pairagon TGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGG caaaaggtctcttccaggagaattagatgggcctttttctctgtccccagTGCTATAAGTCATCCAAAGACCACAGTCCTCAGCTGGATGTGAACTTGCGAGGTAGCAGCATTGTGCACAAAGAGAAGCAAGTGCGGAAAAAAGGACACAAGCTCAAAATGACACCAATGAACACTGATGTTGTTGCACTTGGCCGACAGAGCAAAGACCAACCTGAGCAGTGGCTTCGGgtatatagacccactctgtacactagtcaagttggactgagtgccttgcc Alignment from Exonerate_protein2genome TGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGG caaaaggtctcttccaggagaattagatgggcctttttctctgtccccagTGCTATAAGTCATCCAAAGACCACAGTCCTCAGCTGGATGTGAACTTGCGAGGTAGCAGCATTGTGCACAAAGAGAAGCAAGTGCGGAAAAAAGGACACAAGCTCAAAATGACACCAATGAACACTGATGTTGTTGCACTTGGCCGACAGAGCAAAGACCAACCTGAGCAGTGGCTTCGGgtatatagacccactctgtacactagtcaagttggactgagtgccttgcc Alignment from Exonerate_coding2genome caaaaggtctcttccaggagaattagatgggcctttttctctgtccccagtgctataagtcatccaaagaccacagtcctcagctggatgtgaacttgcgaggtagcagcattgtgcacaaagagaagcaagtgcggaaaaaaggacacaagctcaaaatgacaccaatgaacactgatgttgttgcacttggccgacagagcaaagaccaacctgagcagtggcttcgggtatatagacccactctgtacactagtcaagttggactgagtgccttgcc Alignment from GeneWise TGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGG caaaaggtctcttccaggagaattagatgggcctttttctctgtccccagTGCTATAAGTCATCCAAAGACCACAGTCCTCAGCTGGATGTGAACTTGCGAGGTAGCAGCATTGTGCACAAAGAGAAGCAAGTGCGGAAAAAAGGACACAAGCTCAAAATGACACCAATGAACACTGATGTTGTTGCACTTGGCCGACAGAGCAAAGACCAACCTGAGCAGTGGCTTCGGgtatatagacccactctgtacactagtcaagttggactgagtgccttgcc #### Afap1l2_ID12256_7 --> 2 - 0 Original Alignment agGATGGAGAGGCTGTGAGCAGCTCCTACGAGTCCTACGATGAGGACGAGAACAGCAAAGGCAAGGCTGCCCCCTACCAGTGGCCCTCGCCCGAGGCCAGCATTGAGCTGATGCGTGATGCCCGCATCTGTGCCTTCCTGTGGCGCAAGAAGTGGCTAGGCCAGTGGGCCAAGCAGCTCTGTGTGATCAGGGACACCAGGCTCTTG agcccatcatgagacgttacccaggtgttcatgctgtacactccctccagagGATGGAGAGGTTGTAAGTTGCTCCTATGAATCCTATGACGAGGATGAAAATAGTAAAGGCAAGGCTTCCCCCTACCAGTGGCCCTCACCCAAGGCCAGTATTGAACTTACACGTGATGCCCAGATCTGTGCTTTTCTGTGGCGTAAGAAGTGGTTGGGCCAATGGGCAAAGCAGCTGTGTGTGATCAGGGACACCAGGCTTTTGgtgagctgatatactggtgaacttcgccaccgattaaatctggctgaaca Alignment from CESAR agGATGGAGAGGCTGTGAGCAGCTCCTACGAGTCCTACGATGAGGACGAGAACAGCAAAGGCAAGGCTGCCCCCTACCAGTGGCCCTCGCCCGAGGCCAGCATTGAGCTGATGCGTGATGCCCGCATCTGTGCCTTCCTGTGGCGCAAGAAGTGGCTAGGCCAGTGGGCCAAGCAGCTCTGTGTGATCAGGGACACCAGGCTCTTG agcccatcatgagacgttacccaggtgttcatgctgtacactccctccagagGATGGAGAGGTTGTAAGTTGCTCCTATGAATCCTATGACGAGGATGAAAATAGTAAAGGCAAGGCTTCCCCCTACCAGTGGCCCTCACCCAAGGCCAGTATTGAACTTACACGTGATGCCCAGATCTGTGCTTTTCTGTGGCGTAAGAAGTGGTTGGGCCAATGGGCAAAGCAGCTGTGTGTGATCAGGGACACCAGGCTTTTGgtgagctgatatactggtgaacttcgccaccgattaaatctggctgaaca Alignment from Spaln_aa2Genome AGGATGGAGAGGCTGTGAGCAGCTCCTACGAGTCCTACGATGAGGACGAGAACAGCAAAGGCAAGGCTGCCCCCTACCAGTGGCCCTCGCCCGAGGCCAGCATTGAGCTGATGCGTGATGCCCGCATCTGTGCCTTCCTGTGGCGCAAGAAGTGGCTAGGCCAGTGGGCCAAGCAGCTCTGTGTGATCAGGGACACCAGGCTCTTG agcccatcatgagacgttacccaggtgttcatgctgtacactccctccagAGGATGGAGAGGTTGTAAGTTGCTCCTATGAATCCTATGACGAGGATGAAAATAGTAAAGGCAAGGCTTCCCCCTACCAGTGGCCCTCACCCAAGGCCAGTATTGAACTTACACGTGATGCCCAGATCTGTGCTTTTCTGTGGCGTAAGAAGTGGTTGGGCCAATGGGCAAAGCAGCTGTGTGTGATCAGGGACACCAGGCTTTTGgtgagctgatatactggtgaacttcgccaccgattaaatctggctgaaca Alignment from Spaln_nt2Genome AGGATGGAGAGGCTGTGAGCAGCTCCTACGAGTCCTACGATGAGGACGAGAACAGCAAAGGCAAGGCTGCCCCCTACCAGTGGCCCTCGCCCGAGGCCAGCATTGAGCTGATGCGTGATGCCCGCATCTGTGCCTTCCTGTGGCGCAAGAAGTGGCTAGGCCAGTGGGCCAAGCAGCTCTGTGTGATCAGGGACACCAGGCTCTTG agcccatcatgagacgttacccaggtgttcatgctgtacactccctccagAGGATGGAGAGGTTGTAAGTTGCTCCTATGAATCCTATGACGAGGATGAAAATAGTAAAGGCAAGGCTTCCCCCTACCAGTGGCCCTCACCCAAGGCCAGTATTGAACTTACACGTGATGCCCAGATCTGTGCTTTTCTGTGGCGTAAGAAGTGGTTGGGCCAATGGGCAAAGCAGCTGTGTGTGATCAGGGACACCAGGCTTTTGgtgagctgatatactggtgaacttcgccaccgattaaatctggctgaaca Alignment from Pairagon AGGATGGAGAGGCTGTGAGCAGCTCCTACGAGTCCTACGATGAGGACGAGAACAGCAAAGGCAAGGCTGCCCCCTACCAGTGGCCCTCGCCCGAGGCCAGCATTGAGCTGATGCGTGATGCCCGCATCTGTGCCTTCCTGTGGCGCAAGAAGTGGCTAGGCCAGTGGGCCAAGCAGCTCTGTGTGATCAGGGACACCAGGCTCTTG agcccatcatgagacgttacccaggtgttcatgctgtacactccctccagAGGATGGAGAGGTTGTAAGTTGCTCCTATGAATCCTATGACGAGGATGAAAATAGTAAAGGCAAGGCTTCCCCCTACCAGTGGCCCTCACCCAAGGCCAGTATTGAACTTACACGTGATGCCCAGATCTGTGCTTTTCTGTGGCGTAAGAAGTGGTTGGGCCAATGGGCAAAGCAGCTGTGTGTGATCAGGGACACCAGGCTTTTGgtgagctgatatactggtgaacttcgccaccgattaaatctggctgaaca Alignment from Exonerate_protein2genome AGGATGGAGAGGCTGTGAGCAGCTCCTACGAGTCCTACGATGAGGACGAGAACAGCAAAGGCAAGGCTGCCCCCTACCAGTGGCCCTCGCCCGAGGCCAGCATTGAGCTGATGCGTGATGCCCGCATCTGTGCCTTCCTGTGGCGCAAGAAGTGGCTAGGCCAGTGGGCCAAGCAGCTCTGTGTGATCAGGGACACCAGGCTCTTG agcccatcatgagacgttacccaggtgttcatgctgtacactccctccagAGGATGGAGAGGTTGTAAGTTGCTCCTATGAATCCTATGACGAGGATGAAAATAGTAAAGGCAAGGCTTCCCCCTACCAGTGGCCCTCACCCAAGGCCAGTATTGAACTTACACGTGATGCCCAGATCTGTGCTTTTCTGTGGCGTAAGAAGTGGTTGGGCCAATGGGCAAAGCAGCTGTGTGTGATCAGGGACACCAGGCTTTTGgtgagctgatatactggtgaacttcgccaccgattaaatctggctgaaca Alignment from Exonerate_coding2genome agcccatcatgagacgttacccaggtgttcatgctgtacactccctccagaggatggagaggttgtaagttgctcctatgaatcctatgacgaggatgaaaatagtaaaggcaaggcttccccctaccagtggccctcacccaaggccagtattgaacttacacgtgatgcccagatctgtgcttttctgtggcgtaagaagtggttgggccaatgggcaaagcagctgtgtgtgatcagggacaccaggcttttggtgagctgatatactggtgaacttcgccaccgattaaatctggctgaaca Alignment from GeneWise AGGATGGAGAGGCTGTGAGCAGCTCCTACGAGTCCTACGATGAGGACGAGAACAGCAAAGGCAAGGCTGCCCCCTACCAGTGGCCCTCGCCCGAGGCCAGCATTGAGCTGATGCGTGATGCCCGCATCTGTGCCTTCCTGTGGCGCAAGAAGTGGCTAGGCCAGTGGGCCAAGCAGCTCTGTGTGATCAGGGACACCAGGCTCTTG agcccatcatgagacgttacccaggtgttcatgctgtacactccctccagAGGATGGAGAGGTTGTAAGTTGCTCCTATGAATCCTATGACGAGGATGAAAATAGTAAAGGCAAGGCTTCCCCCTACCAGTGGCCCTCACCCAAGGCCAGTATTGAACTTACACGTGATGCCCAGATCTGTGCTTTTCTGTGGCGTAAGAAGTGGTTGGGCCAATGGGCAAAGCAGCTGTGTGTGATCAGGGACACCAGGCTTTTGgtgagctgatatactggtgaacttcgccaccgattaaatctggctgaaca #### Ak3_ID6204_4 --> 0 - 2 Original Alignment GGCATTGATGACCTGACCGGAGAACCTCTGATTCAGCGCGAGGATGACAAACCAGAGACAGTGATCAAGAGACTAAAGGCCTATGAAGCCCAGACAGAGCCGGTCCTGCAGTATTACca tagtccaggtctggaaccctctccttggctggcccccaatgtgtctgtagGGGATTGATGACCTTAGTGGTGAACCTCTTATACAGCGTGAGGATGATAGGCCAGAGACTGTAATCAAGCGATTGAAGGCCTGTGAAGCTCAG---GATCCAGTATTGCAGTACTACcagtaaaactattcctattgtacatttacctaccctgttttgttgtgcaata Alignment from CESAR GGCATTGATGACCTGACCGGAGAACCTCTGATTCAGCGCGAGGATGACAAACCAGAGACAGTGATCAAGAGACTAAAGGCCTATGAAGCCCAGACAGAGCCGGTCCTGCAGTATTACca tagtccaggtctggaaccctctccttggctggcccccaatgtgtctgtagGGGATTGATGACCTTAGTGGTGAACCTCTTATACAGCGTGAGGATGATAGGCCAGAGACTGTAATCAAGCGATTGAAGGCCTGTGAAGCTCAG---GATCCAGTATTGCAGTACTACcagtaaaactattcctattgtacatttacctaccctgttttgttgtgcaata Alignment from Spaln_aa2Genome GGCATTGATGACCTGACCGGAGAACCTCTGATTCAGCGCGAGGATGACAAACCAGAGACAGTGATCAAGAGACTAAAGGCCTATGAAGCCCAGACAGAGCCGGTCCTGCAGTATTACCA tagtccaggtctggaaccctctccttggctggcccccaatgtgtctgtagGGGATTGATGACCTTAGTGGTGAACCTCTTATACAGCGTGAGGATGATAGGCCAGAGACTGTAATCAAGCGATTGAAGGCCTGTGAAGCTCAG---GATCCAGTATTGCAGTACTACCAgtaaaactattcctattgtacatttacctaccctgttttgttgtgcaata Alignment from Spaln_nt2Genome GGCATTGATGACCTGACCGGAGAACCTCTGATTCAGCGCGAGGATGACAAACCAGAGACAGTGATCAAGAGACTAAAGGCCTATGAAGCCCAGACAGAGCCGGTCCTGCAGTATTACCA tagtccaggtctggaaccctctccttggctggcccccaatgtgtctgtagGGGATTGATGACCTTAGTGGTGAACCTCTTATACAGCGTGAGGATGATAGGCCAGAGACTGTAATCAAGCGATTGAAGGCCTGTGAAGCTCAG---GATCCAGTATTGCAGTACTACCAgtaaaactattcctattgtacatttacctaccctgttttgttgtgcaata Alignment from Pairagon GGCATTGATGACCTGACCGGAGAACCTCTGATTCAGCGCGAGGATGACAAACCAGAGACAGTGATCAAGAGACTAAAGGCCTATGAAGCCCAGACAGAGCCGGTCCTGCAGTATTACCA tagtccaggtctggaaccctctccttggctggcccccaatgtgtctgtagGGGATTGATGACCTTAGTGGTGAACCTCTTATACAGCGTGAGGATGATAGGCCAGAGACTGTAATCAAGCGATTGAAGGCCTGTGAAGCTCAG---GATCCAGTATTGCAGTACTACCAgtaaaactattcctattgtacatttacctaccctgttttgttgtgcaata Alignment from Exonerate_protein2genome GGCATTGATGACCTGACCGGAGAACCTCTGATTCAGCGCGAGGATGACAAACCAGAGACAGTGATCAAGAGACTAAAGGCCTATGAAGCCCAGACAGAGCCGGTCCTGCAGTATTACCA tagtccaggtctggaaccctctccttggctggcccccaatgtgtctgtagGGGATTGATGACCTTAGTGGTGAACCTCTTATACAGCGTGAGGATGATAGGCCAGAGACTGTAATCAAGCGATTGAAGGCCTGTGAAGCTCAG---GATCCAGTATTGCAGTACTACCAgtaaaactattcctattgtacatttacctaccctgttttgttgtgcaata Alignment from Exonerate_coding2genome GGCATTGATGACCTGACCGGAGAACCTCTGATTCAGCGCGAGGATGACAAACCAGAGACAGTGATCAAGAGACTAAAGGCCTATGAAGCCCAGACAGAGCCGGTCCTGCAGTATTACCA tagtccaggtctggaaccctctccttggctggcccccaatgtgtctgtagGGGATTGATGACCTTAGTGGTGAACCTCTTATACAGCGTGAGGATGATAGGCCAGAGACTGTAATCAAGCGATTGAAGGCCTGTGAAGCTCAG---GATCCAGTATTGCAGTACTACCAgtaaaactattcctattgtacatttacctaccctgttttgttgtgcaata Alignment from GeneWise GGCATTGATGACCTGACCGGAGAACCTCTGATTCAGCGCGAGGATGACAAACCAGAGACAGTGATCAAGAGACTAAAGGCCTATGAAGCCCAGACAGAGCCGGTCCTGCAGTATTACCA tagtccaggtctggaaccctctccttggctggcccccaatgtgtctgtagGGGATTGATGACCTTAGTGGTGAACCTCTTATACAGCGTGAGGATGATAGGCCAGAGACTGTAATCAAGCGATTGAAGGCCTGTGAAGCTCAG---GATCCAGTATTGCAGTACTACCAgtaaaactattcctattgtacatttacctaccctgttttgttgtgcaata #### Ak3_ID6205_3 --> 2 - 0 Original Alignment gaTTTCCAAGGACACTTCCACAGGCAGAAGCCCTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTCAACGTGCCCTTTGAGGTCATTAAACAGCGCCTTACTGCTCGCTGGATACATCCTGCCAGTGGTCGAGTATACAACATTGAATTCAACCCTCCCAAGACTGTG ataggcaaatgtaccaagagtgaattttcttggcattccctgactcccaggcTTTCCAAGGACACTTCCACAAGCAGAGTCACTGGATAAAGTTTATCAGATAGATACAGTGATAAACCTTAATGTCCCATTTGAAGTCATCAAACAGCGTCTCACTGCTCGCTGGATACACCCAGCCAGTGGTCGAGTTCACAACATGGAGTTCAACCCTCCCAAGACCGTGgtacaaatgtgtatgttacataatgaaatgaaggcaagaaaaaagatgtc Alignment from CESAR gaTTTCCAAGGACACTTCCACAGGCAGAAGCCCTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTCAACGTGCCCTTTGAGGTCATTAAACAGCGCCTTACTGCTCGCTGGATACATCCTGCCAGTGGTCGAGTATACAACATTGAATTCAACCCTCCCAAGACTGTG ataggcaaatgtaccaagagtgaattttcttggcattccctgactcccaggcTTTCCAAGGACACTTCCACAAGCAGAGTCACTGGATAAAGTTTATCAGATAGATACAGTGATAAACCTTAATGTCCCATTTGAAGTCATCAAACAGCGTCTCACTGCTCGCTGGATACACCCAGCCAGTGGTCGAGTTCACAACATGGAGTTCAACCCTCCCAAGACCGTGgtacaaatgtgtatgttacataatgaaatgaaggcaagaaaaaagatgtc Alignment from Spaln_aa2Genome GATTTCCAAGGACACTTCCACAGGCAGAAGCCCTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTCAACGTGCCCTTTGAGGTCATTAAACAGCGCCTTACTGCTCGCTGGATACATCCTGCCAGTGGTCGAGTATACAACATTGAATTCAACCCTCCCAAGACTGTG ataggcaaatgtaccaagagtgaattttcttggcattccctgactcccagGCTTTCCAAGGACACTTCCACAAGCAGAGTCACTGGATAAAGTTTATCAGATAGATACAGTGATAAACCTTAATGTCCCATTTGAAGTCATCAAACAGCGTCTCACTGCTCGCTGGATACACCCAGCCAGTGGTCGAGTTCACAACATGGAGTTCAACCCTCCCAAGACCGTGgtacaaatgtgtatgttacataatgaaatgaaggcaagaaaaaagatgtc Alignment from Spaln_nt2Genome GATTTCCAAGGACACTTCCACAGGCAGAAGCCCTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTCAACGTGCCCTTTGAGGTCATTAAACAGCGCCTTACTGCTCGCTGGATACATCCTGCCAGTGGTCGAGTATACAACATTGAATTCAACCCTCCCAAGACTGTG ataggcaaatgtaccaagagtgaattttcttggcattccctgactcccagGCTTTCCAAGGACACTTCCACAAGCAGAGTCACTGGATAAAGTTTATCAGATAGATACAGTGATAAACCTTAATGTCCCATTTGAAGTCATCAAACAGCGTCTCACTGCTCGCTGGATACACCCAGCCAGTGGTCGAGTTCACAACATGGAGTTCAACCCTCCCAAGACCGTGgtacaaatgtgtatgttacataatgaaatgaaggcaagaaaaaagatgtc Alignment from Pairagon GATTTCCAAGGACACTTCCACAGGCAGAAGCCCTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTCAACGTGCCCTTTGAGGTCATTAAACAGCGCCTTACTGCTCGCTGGATACATCCTGCCAGTGGTCGAGTATACAACATTGAATTCAACCCTCCCAAGACTGTG ataggcaaatgtaccaagagtgaattttcttggcattccctgactcccagGCTTTCCAAGGACACTTCCACAAGCAGAGTCACTGGATAAAGTTTATCAGATAGATACAGTGATAAACCTTAATGTCCCATTTGAAGTCATCAAACAGCGTCTCACTGCTCGCTGGATACACCCAGCCAGTGGTCGAGTTCACAACATGGAGTTCAACCCTCCCAAGACCGTGgtacaaatgtgtatgttacataatgaaatgaaggcaagaaaaaagatgtc Alignment from Exonerate_protein2genome GATTTCCAAGGACACTTCCACAGGCAGAAGCCCTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTCAACGTGCCCTTTGAGGTCATTAAACAGCGCCTTACTGCTCGCTGGATACATCCTGCCAGTGGTCGAGTATACAACATTGAATTCAACCCTCCCAAGACTGTG ataggcaaatgtaccaagagtgaattttcttggcattccctgactcccagGCTTTCCAAGGACACTTCCACAAGCAGAGTCACTGGATAAAGTTTATCAGATAGATACAGTGATAAACCTTAATGTCCCATTTGAAGTCATCAAACAGCGTCTCACTGCTCGCTGGATACACCCAGCCAGTGGTCGAGTTCACAACATGGAGTTCAACCCTCCCAAGACCGTGgtacaaatgtgtatgttacataatgaaatgaaggcaagaaaaaagatgtc Alignment from Exonerate_coding2genome GATTTCCAAGGACACTTCCACAGGCAGAAGCCCTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTCAACGTGCCCTTTGAGGTCATTAAACAGCGCCTTACTGCTCGCTGGATACATCCTGCCAGTGGTCGAGTATACAACATTGAATTCAACCCTCCCAAGACTGTG ataggcaaatgtaccaagagtgaattttcttggcattccctgactcccagGCTTTCCAAGGACACTTCCACAAGCAGAGTCACTGGATAAAGTTTATCAGATAGATACAGTGATAAACCTTAATGTCCCATTTGAAGTCATCAAACAGCGTCTCACTGCTCGCTGGATACACCCAGCCAGTGGTCGAGTTCACAACATGGAGTTCAACCCTCCCAAGACCGTGgtacaaatgtgtatgttacataatgaaatgaaggcaagaaaaaagatgtc Alignment from GeneWise GATTTCCAAGGACACTTCCACAGGCAGAAGCCCTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTCAACGTGCCCTTTGAGGTCATTAAACAGCGCCTTACTGCTCGCTGGATACATCCTGCCAGTGGTCGAGTATACAACATTGAATTCAACCCTCCCAAGACTGTG ataggcaaatgtaccaagagtgaattttcttggcattccctgactcccagGCTTTCCAAGGACACTTCCACAAGCAGAGTCACTGGATAAAGTTTATCAGATAGATACAGTGATAAACCTTAATGTCCCATTTGAAGTCATCAAACAGCGTCTCACTGCTCGCTGGATACACCCAGCCAGTGGTCGAGTTCACAACATGGAGTTCAACCCTCCCAAGACCGTGgtacaaatgtgtatgttacataatgaaatgaaggcaagaaaaaagatgtc #### Ak3_ID6206_2 --> 2 - 1 Original Alignment aaATCGGTGTGTTGGCCAAGACTTTCATTGACCAAGGAAAGCTGATCCCAGATGACGTCATGACTCGGCTGGCCCTTCACGAGCTCAAAACCCTTACCCAGTGTAGCTGGCTGTTGGATg gtctcattaattaagtgcatagaaggcctgatgtgttcttgtctgtgtagaaATTGGTGTGTTAGCCAAGACTTTCATAGACCAAGGCAAGCTGATCCCAGATGACGTCATGACTCGGCTGGCCCTCCACAAGCTCCAAACCCTTACCCAATGTAGTTGGCTGTTGGATggtatgagtagtcccaaactatttgtctggctttgcaataattgtgtgcta Alignment from CESAR aaATCGGTGTGTTGGCCAAGACTTTCATTGACCAAGGAAAGCTGATCCCAGATGACGTCATGACTCGGCTGGCCCTTCACGAGCTCAAAACCCTTACCCAGTGTAGCTGGCTGTTGGATg gtctcattaattaagtgcatagaaggcctgatgtgttcttgtctgtgtagaaATTGGTGTGTTAGCCAAGACTTTCATAGACCAAGGCAAGCTGATCCCAGATGACGTCATGACTCGGCTGGCCCTCCACAAGCTCCAAACCCTTACCCAATGTAGTTGGCTGTTGGATggtatgagtagtcccaaactatttgtctggctttgcaataattgtgtgcta Alignment from Spaln_aa2Genome AAATCGGTGTGTTGGCCAAGACTTTCATTGACCAAGGAAAGCTGATCCCAGATGACGTCATGACTCGGCTGGCCCTTCACGAGCTCAAAACCCTTACCCAGTGTAGCTGGCTGTTGGATG gtctcattaattaagtgcatagaaggcctgatgtgttcttgtctgtgtagAAATTGGTGTGTTAGCCAAGACTTTCATAGACCAAGGCAAGCTGATCCCAGATGACGTCATGACTCGGCTGGCCCTCCACAAGCTCCAAACCCTTACCCAATGTAGTTGGCTGTTGGATGgtatgagtagtcccaaactatttgtctggctttgcaataattgtgtgcta Alignment from Spaln_nt2Genome AAATCGGTGTGTTGGCCAAGACTTTCATTGACCAAGGAAAGCTGATCCCAGATGACGTCATGACTCGGCTGGCCCTTCACGAGCTCAAAACCCTTACCCAGTGTAGCTGGCTGTTGGATG gtctcattaattaagtgcatagaaggcctgatgtgttcttgtctgtgtagAAATTGGTGTGTTAGCCAAGACTTTCATAGACCAAGGCAAGCTGATCCCAGATGACGTCATGACTCGGCTGGCCCTCCACAAGCTCCAAACCCTTACCCAATGTAGTTGGCTGTTGGATGgtatgagtagtcccaaactatttgtctggctttgcaataattgtgtgcta Alignment from Pairagon AAATCGGTGTGTTGGCCAAGACTTTCATTGACCAAGGAAAGCTGATCCCAGATGACGTCATGACTCGGCTGGCCCTTCACGAGCTCAAAACCCTTACCCAGTGTAGCTGGCTGTTGGATG gtctcattaattaagtgcatagaaggcctgatgtgttcttgtctgtgtagAAATTGGTGTGTTAGCCAAGACTTTCATAGACCAAGGCAAGCTGATCCCAGATGACGTCATGACTCGGCTGGCCCTCCACAAGCTCCAAACCCTTACCCAATGTAGTTGGCTGTTGGATGgtatgagtagtcccaaactatttgtctggctttgcaataattgtgtgcta Alignment from Exonerate_protein2genome AAATCGGTGTGTTGGCCAAGACTTTCATTGACCAAGGAAAGCTGATCCCAGATGACGTCATGACTCGGCTGGCCCTTCACGAGCTCAAAACCCTTACCCAGTGTAGCTGGCTGTTGGATG gtctcattaattaagtgcatagaaggcctgatgtgttcttgtctgtgtagAAATTGGTGTGTTAGCCAAGACTTTCATAGACCAAGGCAAGCTGATCCCAGATGACGTCATGACTCGGCTGGCCCTCCACAAGCTCCAAACCCTTACCCAATGTAGTTGGCTGTTGGATGgtatgagtagtcccaaactatttgtctggctttgcaataattgtgtgcta Alignment from Exonerate_coding2genome AAATCGGTGTGTTGGCCAAGACTTTCATTGACCAAGGAAAGCTGATCCCAGATGACGTCATGACTCGGCTGGCCCTTCACGAGCTCAAAACCCTTACCCAGTGTAGCTGGCTGTTGGATG gtctcattaattaagtgcatagaaggcctgatgtgttcttgtctgtgtagAAATTGGTGTGTTAGCCAAGACTTTCATAGACCAAGGCAAGCTGATCCCAGATGACGTCATGACTCGGCTGGCCCTCCACAAGCTCCAAACCCTTACCCAATGTAGTTGGCTGTTGGATGgtatgagtagtcccaaactatttgtctggctttgcaataattgtgtgcta Alignment from GeneWise AAATCGGTGTGTTGGCCAAGACTTTCATTGACCAAGGAAAGCTGATCCCAGATGACGTCATGACTCGGCTGGCCCTTCACGAGCTCAAAACCCTTACCCAGTGTAGCTGGCTGTTGGATG gtctcattaattaagtgcatagaaggcctgatgtgttcttgtctgtgtagAAATTGGTGTGTTAGCCAAGACTTTCATAGACCAAGGCAAGCTGATCCCAGATGACGTCATGACTCGGCTGGCCCTCCACAAGCTCCAAACCCTTACCCAATGTAGTTGGCTGTTGGATGgtatgagtagtcccaaactatttgtctggctttgcaataattgtgtgcta #### Aldh18a1_ID7971_12 --> 0 - 0 Original Alignment GTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGCTG gattgaactgacccagtagtatcttaccgataccctccgtctgtttctagGTGGCTGCCTTGGCCATTGCCAGTGGCAATGGCTTATTGCTCAAGGGTGGGAAGGAGGCTGCACATAGTAATCGCATTCTCCACCTCCTTATCCAGGAGGCCCTCTCCATCCATGGTGTCAAGGAGGCAATTCAGCTGgttagtctgatcttacctggtattgagaattctactgaatagaataggta Alignment from CESAR GTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGCTG gattgaactgacccagtagtatcttaccgataccctccgtctgtttctagGTGGCTGCCTTGGCCATTGCCAGTGGCAATGGCTTATTGCTCAAGGGTGGGAAGGAGGCTGCACATAGTAATCGCATTCTCCACCTCCTTATCCAGGAGGCCCTCTCCATCCATGGTGTCAAGGAGGCAATTCAGCTGgttagtctgatcttacctggtattgagaattctactgaatagaataggta Alignment from Spaln_aa2Genome GTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGCTG gattgaactgacccagtagtatcttaccgataccctccgtctgtttctagGTGGCTGCCTTGGCCATTGCCAGTGGCAATGGCTTATTGCTCAAGGGTGGGAAGGAGGCTGCACATAGTAATCGCATTCTCCACCTCCTTATCCAGGAGGCCCTCTCCATCCATGGTGTCAAGGAGGCAATTCAGCTGgttagtctgatcttacctggtattgagaattctactgaatagaataggta Alignment from Spaln_nt2Genome GTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGCTG gattgaactgacccagtagtatcttaccgataccctccgtctgtttctagGTGGCTGCCTTGGCCATTGCCAGTGGCAATGGCTTATTGCTCAAGGGTGGGAAGGAGGCTGCACATAGTAATCGCATTCTCCACCTCCTTATCCAGGAGGCCCTCTCCATCCATGGTGTCAAGGAGGCAATTCAGCTGgttagtctgatcttacctggtattgagaattctactgaatagaataggta Alignment from Pairagon GTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGCTG gattgaactgacccagtagtatcttaccgataccctccgtctgtttctagGTGGCTGCCTTGGCCATTGCCAGTGGCAATGGCTTATTGCTCAAGGGTGGGAAGGAGGCTGCACATAGTAATCGCATTCTCCACCTCCTTATCCAGGAGGCCCTCTCCATCCATGGTGTCAAGGAGGCAATTCAGCTGgttagtctgatcttacctggtattgagaattctactgaatagaataggta Alignment from Exonerate_protein2genome GTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGCTG gattgaactgacccagtagtatcttaccgataccctccgtctgtttctagGTGGCTGCCTTGGCCATTGCCAGTGGCAATGGCTTATTGCTCAAGGGTGGGAAGGAGGCTGCACATAGTAATCGCATTCTCCACCTCCTTATCCAGGAGGCCCTCTCCATCCATGGTGTCAAGGAGGCAATTCAGCTGgttagtctgatcttacctggtattgagaattctactgaatagaataggta Alignment from Exonerate_coding2genome GTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGCTG gattgaactgacccagtagtatcttaccgataccctccgtctgtttctagGTGGCTGCCTTGGCCATTGCCAGTGGCAATGGCTTATTGCTCAAGGGTGGGAAGGAGGCTGCACATAGTAATCGCATTCTCCACCTCCTTATCCAGGAGGCCCTCTCCATCCATGGTGTCAAGGAGGCAATTCAGCTGgttagtctgatcttacctggtattgagaattctactgaatagaataggta Alignment from GeneWise GTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGCTG gattgaactgacccagtagtatcttaccgataccctccgtctgtttctagGTGGCTGCCTTGGCCATTGCCAGTGGCAATGGCTTATTGCTCAAGGGTGGGAAGGAGGCTGCACATAGTAATCGCATTCTCCACCTCCTTATCCAGGAGGCCCTCTCCATCCATGGTGTCAAGGAGGCAATTCAGCTGgttagtctgatcttacctggtattgagaattctactgaatagaataggta #### Aldh18a1_ID7974_9 --> 2 - 0 Original Alignment gtCCTACAGTGGAGCAGCAGGGGGAGATGGCTCGATCTGGTGGGAGAATGCTGGCTACCTTAGAGCCTGAACAG caatcagttgtccagggaatacaagtagtctcttccatttgtctccacaggtCCTACAGTTGAGCAGCAGGGGGAGATGGCTTGCTCTGGAGGAAGAATGATAGCAACCTTGGAACCTGAACAGgtaggttaggtgtgtttcaaagcaaagcataatctaatcctgggtctgtc Alignment from CESAR gtCCTACAGTGGAGCAGCAGGGGGAGATGGCTCGATCTGGTGGGAGAATGCTGGCTACCTTAGAGCCTGAACAG caatcagttgtccagggaatacaagtagtctcttccatttgtctccacaggtCCTACAGTTGAGCAGCAGGGGGAGATGGCTTGCTCTGGAGGAAGAATGATAGCAACCTTGGAACCTGAACAGgtaggttaggtgtgtttcaaagcaaagcataatctaatcctgggtctgtc Alignment from Spaln_aa2Genome GTCCTACAGTGGAGCAGCAGGGGGAGATGGCTCGATCTGGTGGGAGAATGCTGGCTACCTTAGAGCCTGAACAG caatcagttgtccagggaatacaagtagtctcttccatttgtctccacagGTCCTACAGTTGAGCAGCAGGGGGAGATGGCTTGCTCTGGAGGAAGAATGATAGCAACCTTGGAACCTGAACAGgtaggttaggtgtgtttcaaagcaaagcataatctaatcctgggtctgtc Alignment from Spaln_nt2Genome GTCCTACAGTGGAGCAGCAGGGGGAGATGGCTCGATCTGGTGGGAGAATGCTGGCTACCTTAGAGCCTGAACAG caatcagttgtccagggaatacaagtagtctcttccatttgtctccacagGTCCTACAGTTGAGCAGCAGGGGGAGATGGCTTGCTCTGGAGGAAGAATGATAGCAACCTTGGAACCTGAACAGgtaggttaggtgtgtttcaaagcaaagcataatctaatcctgggtctgtc Alignment from Pairagon GTCCTACAGTGGAGCAGCAGGGGGAGATGGCTCGATCTGGTGGGAGAATGCTGGCTACCTTAGAGCCTGAACAG caatcagttgtccagggaatacaagtagtctcttccatttgtctccacagGTCCTACAGTTGAGCAGCAGGGGGAGATGGCTTGCTCTGGAGGAAGAATGATAGCAACCTTGGAACCTGAACAGgtaggttaggtgtgtttcaaagcaaagcataatctaatcctgggtctgtc Alignment from Exonerate_protein2genome GTCCTACAGTGGAGCAGCAGGGGGAGATGGCTCGATCTGGTGGGAGAATGCTGGCTACCTTAGAGCCTGAACAG caatcagttgtccagggaatacaagtagtctcttccatttgtctccacagGTCCTACAGTTGAGCAGCAGGGGGAGATGGCTTGCTCTGGAGGAAGAATGATAGCAACCTTGGAACCTGAACAGgtaggttaggtgtgtttcaaagcaaagcataatctaatcctgggtctgtc Alignment from Exonerate_coding2genome GTCCTACAGTGGAGCAGCAGGGGGAGATGGCTCGATCTGGTGGGAGAATGCTGGCTACCTTAGAGCCTGAACAG caatcagttgtccagggaatacaagtagtctcttccatttgtctccacagGTCCTACAGTTGAGCAGCAGGGGGAGATGGCTTGCTCTGGAGGAAGAATGATAGCAACCTTGGAACCTGAACAGgtaggttaggtgtgtttcaaagcaaagcataatctaatcctgggtctgtc Alignment from GeneWise GTCCTACAGTGGAGCAGCAGGGGGAGATGGCTCGATCTGGTGGGAGAATGCTGGCTACCTTAGAGCCTGAACAG caatcagttgtccagggaatacaagtagtctcttccatttgtctccacagGTCCTACAGTTGAGCAGCAGGGGGAGATGGCTTGCTCTGGAGGAAGAATGATAGCAACCTTGGAACCTGAACAGgtaggttaggtgtgtttcaaagcaaagcataatctaatcctgggtctgtc #### Aldh18a1_ID7975_8 --> 0 - 1 Original Alignment GTGAAAGCCGCCCTCTGGGCTTTGCAAGGCGGGACTTCTGTCGTCATTGCCAACGGGACCCACCCAAAGGTGTCTGGGCACGTCATCACAGACATCGTGGAGGGAAAGAAAGTTGGCACCTTCTTTTCAGAAGTGAAGCCTGCTg gatgtaaagaataaattgtggtggctctgctcaaggtggattcgttatagGTAAAAGCCGCTCTTTGGGCATTGCAGGGTGGAACCTCTGTCGTCATTGCAAATGGGACCCACCCAAAGGTGCCTGGGCATGTTATCACAGATGTTGTGGAGGGGAAGAAAGTTGGCACATTCTTTCCAGAACTGAAACCTACTggtaagtcacaatgatcccaacttggcactataacactggaccctacacac Alignment from CESAR GTGAAAGCCGCCCTCTGGGCTTTGCAAGGCGGGACTTCTGTCGTCATTGCCAACGGGACCCACCCAAAGGTGTCTGGGCACGTCATCACAGACATCGTGGAGGGAAAGAAAGTTGGCACCTTCTTTTCAGAAGTGAAGCCTGCTg gatgtaaagaataaattgtggtggctctgctcaaggtggattcgttatagGTAAAAGCCGCTCTTTGGGCATTGCAGGGTGGAACCTCTGTCGTCATTGCAAATGGGACCCACCCAAAGGTGCCTGGGCATGTTATCACAGATGTTGTGGAGGGGAAGAAAGTTGGCACATTCTTTCCAGAACTGAAACCTACTggtaagtcacaatgatcccaacttggcactataacactggaccctacacac Alignment from Spaln_aa2Genome GTGAAAGCCGCCCTCTGGGCTTTGCAAGGCGGGACTTCTGTCGTCATTGCCAACGGGACCCACCCAAAGGTGTCTGGGCACGTCATCACAGACATCGTGGAGGGAAAGAAAGTTGGCACCTTCTTTTCAGAAGTGAAGCCTGCTG gatgtaaagaataaattgtggtggctctgctcaaggtggattcgttatagGTAAAAGCCGCTCTTTGGGCATTGCAGGGTGGAACCTCTGTCGTCATTGCAAATGGGACCCACCCAAAGGTGCCTGGGCATGTTATCACAGATGTTGTGGAGGGGAAGAAAGTTGGCACATTCTTTCCAGAACTGAAACCTACTGgtaagtcacaatgatcccaacttggcactataacactggaccctacacac Alignment from Spaln_nt2Genome GTGAAAGCCGCCCTCTGGGCTTTGCAAGGCGGGACTTCTGTCGTCATTGCCAACGGGACCCACCCAAAGGTGTCTGGGCACGTCATCACAGACATCGTGGAGGGAAAGAAAGTTGGCACCTTCTTTTCAGAAGTGAAGCCTGCTG gatgtaaagaataaattgtggtggctctgctcaaggtggattcgttatagGTAAAAGCCGCTCTTTGGGCATTGCAGGGTGGAACCTCTGTCGTCATTGCAAATGGGACCCACCCAAAGGTGCCTGGGCATGTTATCACAGATGTTGTGGAGGGGAAGAAAGTTGGCACATTCTTTCCAGAACTGAAACCTACTGgtaagtcacaatgatcccaacttggcactataacactggaccctacacac Alignment from Pairagon GTGAAAGCCGCCCTCTGGGCTTTGCAAGGCGGGACTTCTGTCGTCATTGCCAACGGGACCCACCCAAAGGTGTCTGGGCACGTCATCACAGACATCGTGGAGGGAAAGAAAGTTGGCACCTTCTTTTCAGAAGTGAAGCCTGCTG gatgtaaagaataaattgtggtggctctgctcaaggtggattcgttatagGTAAAAGCCGCTCTTTGGGCATTGCAGGGTGGAACCTCTGTCGTCATTGCAAATGGGACCCACCCAAAGGTGCCTGGGCATGTTATCACAGATGTTGTGGAGGGGAAGAAAGTTGGCACATTCTTTCCAGAACTGAAACCTACTGgtaagtcacaatgatcccaacttggcactataacactggaccctacacac Alignment from Exonerate_protein2genome GTGAAAGCCGCCCTCTGGGCTTTGCAAGGCGGGACTTCTGTCGTCATTGCCAACGGGACCCACCCAAAGGTGTCTGGGCACGTCATCACAGACATCGTGGAGGGAAAGAAAGTTGGCACCTTCTTTTCAGAAGTGAAGCCTGCTG gatgtaaagaataaattgtggtggctctgctcaaggtggattcgttatagGTAAAAGCCGCTCTTTGGGCATTGCAGGGTGGAACCTCTGTCGTCATTGCAAATGGGACCCACCCAAAGGTGCCTGGGCATGTTATCACAGATGTTGTGGAGGGGAAGAAAGTTGGCACATTCTTTCCAGAACTGAAACCTACTGgtaagtcacaatgatcccaacttggcactataacactggaccctacacac Alignment from Exonerate_coding2genome GTGAAAGCCGCCCTCTGGGCTTTGCAAGGCGGGACTTCTGTCGTCATTGCCAACGGGACCCACCCAAAGGTGTCTGGGCACGTCATCACAGACATCGTGGAGGGAAAGAAAGTTGGCACCTTCTTTTCAGAAGTGAAGCCTGCTG gatgtaaagaataaattgtggtggctctgctcaaggtggattcgttatagGTAAAAGCCGCTCTTTGGGCATTGCAGGGTGGAACCTCTGTCGTCATTGCAAATGGGACCCACCCAAAGGTGCCTGGGCATGTTATCACAGATGTTGTGGAGGGGAAGAAAGTTGGCACATTCTTTCCAGAACTGAAACCTACTGgtaagtcacaatgatcccaacttggcactataacactggaccctacacac Alignment from GeneWise GTGAAAGCCGCCCTCTGGGCTTTGCAAGGCGGGACTTCTGTCGTCATTGCCAACGGGACCCACCCAAAGGTGTCTGGGCACGTCATCACAGACATCGTGGAGGGAAAGAAAGTTGGCACCTTCTTTTCAGAAGTGAAGCCTGCTG gatgtaaagaataaattgtggtggctctgctcaaggtggattcgttatagGTAAAAGCCGCTCTTTGGGCATTGCAGGGTGGAACCTCTGTCGTCATTGCAAATGGGACCCACCCAAAGGTGCCTGGGCATGTTATCACAGATGTTGTGGAGGGGAAGAAAGTTGGCACATTCTTTCCAGAACTGAAACCTACTGgtaagtcacaatgatcccaacttggcactataacactggaccctacacac #### Aldh18a1_ID7980_3 --> 0 - 0 Original Alignment GTCTCGGTGCTGCAGAATCAGGGCCGAGAGATGATGCTGGTGACCAGTGGAGCCGTCGCCTTCGGCAAACAGCGCCTGCGCCATGAGATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCACTCAGGACAGAACCATCTGAAGGAGATG ggcagaacaataagaaactttggtgctgtacgtcctggtattttcctcagGTCTCAGTCTTACAAAATCAGGGCCGAGAGATGATGCTAGTAACCAGTGGGGCGGTTGCTTTGGGCAAACAGCGCCTCCGCCATGAAATCCTACTGTCTCAGAGTGTCCGCCAGGCCTTACATTCAGGCCAGAACCATCTGAAGGAGATGgtgtgtgtttgggactattatgagcttgctctgggactattatgagcttg Alignment from CESAR GTCTCGGTGCTGCAGAATCAGGGCCGAGAGATGATGCTGGTGACCAGTGGAGCCGTCGCCTTCGGCAAACAGCGCCTGCGCCATGAGATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCACTCAGGACAGAACCATCTGAAGGAGATG ggcagaacaataagaaactttggtgctgtacgtcctggtattttcctcagGTCTCAGTCTTACAAAATCAGGGCCGAGAGATGATGCTAGTAACCAGTGGGGCGGTTGCTTTGGGCAAACAGCGCCTCCGCCATGAAATCCTACTGTCTCAGAGTGTCCGCCAGGCCTTACATTCAGGCCAGAACCATCTGAAGGAGATGgtgtgtgtttgggactattatgagcttgctctgggactattatgagcttg Alignment from Spaln_aa2Genome GTCTCGGTGCTGCAGAATCAGGGCCGAGAGATGATGCTGGTGACCAGTGGAGCCGTCGCCTTCGGCAAACAGCGCCTGCGCCATGAGATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCACTCAGGACAGAACCATCTGAAGGAGATG ggcagaacaataagaaactttggtgctgtacgtcctggtattttcctcagGTCTCAGTCTTACAAAATCAGGGCCGAGAGATGATGCTAGTAACCAGTGGGGCGGTTGCTTTGGGCAAACAGCGCCTCCGCCATGAAATCCTACTGTCTCAGAGTGTCCGCCAGGCCTTACATTCAGGCCAGAACCATCTGAAGGAGATGgtgtgtgtttgggactattatgagcttgctctgggactattatgagcttg Alignment from Spaln_nt2Genome GTCTCGGTGCTGCAGAATCAGGGCCGAGAGATGATGCTGGTGACCAGTGGAGCCGTCGCCTTCGGCAAACAGCGCCTGCGCCATGAGATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCACTCAGGACAGAACCATCTGAAGGAGATG ggcagaacaataagaaactttggtgctgtacgtcctggtattttcctcagGTCTCAGTCTTACAAAATCAGGGCCGAGAGATGATGCTAGTAACCAGTGGGGCGGTTGCTTTGGGCAAACAGCGCCTCCGCCATGAAATCCTACTGTCTCAGAGTGTCCGCCAGGCCTTACATTCAGGCCAGAACCATCTGAAGGAGATGgtgtgtgtttgggactattatgagcttgctctgggactattatgagcttg Alignment from Pairagon GTCTCGGTGCTGCAGAATCAGGGCCGAGAGATGATGCTGGTGACCAGTGGAGCCGTCGCCTTCGGCAAACAGCGCCTGCGCCATGAGATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCACTCAGGACAGAACCATCTGAAGGAGATG ggcagaacaataagaaactttggtgctgtacgtcctggtattttcctcagGTCTCAGTCTTACAAAATCAGGGCCGAGAGATGATGCTAGTAACCAGTGGGGCGGTTGCTTTGGGCAAACAGCGCCTCCGCCATGAAATCCTACTGTCTCAGAGTGTCCGCCAGGCCTTACATTCAGGCCAGAACCATCTGAAGGAGATGgtgtgtgtttgggactattatgagcttgctctgggactattatgagcttg Alignment from Exonerate_protein2genome GTCTCGGTGCTGCAGAATCAGGGCCGAGAGATGATGCTGGTGACCAGTGGAGCCGTCGCCTTCGGCAAACAGCGCCTGCGCCATGAGATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCACTCAGGACAGAACCATCTGAAGGAGATG ggcagaacaataagaaactttggtgctgtacgtcctggtattttcctcagGTCTCAGTCTTACAAAATCAGGGCCGAGAGATGATGCTAGTAACCAGTGGGGCGGTTGCTTTGGGCAAACAGCGCCTCCGCCATGAAATCCTACTGTCTCAGAGTGTCCGCCAGGCCTTACATTCAGGCCAGAACCATCTGAAGGAGATGgtgtgtgtttgggactattatgagcttgctctgggactattatgagcttg Alignment from Exonerate_coding2genome GTCTCGGTGCTGCAGAATCAGGGCCGAGAGATGATGCTGGTGACCAGTGGAGCCGTCGCCTTCGGCAAACAGCGCCTGCGCCATGAGATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCACTCAGGACAGAACCATCTGAAGGAGATG ggcagaacaataagaaactttggtgctgtacgtcctggtattttcctcagGTCTCAGTCTTACAAAATCAGGGCCGAGAGATGATGCTAGTAACCAGTGGGGCGGTTGCTTTGGGCAAACAGCGCCTCCGCCATGAAATCCTACTGTCTCAGAGTGTCCGCCAGGCCTTACATTCAGGCCAGAACCATCTGAAGGAGATGgtgtgtgtttgggactattatgagcttgctctgggactattatgagcttg Alignment from GeneWise GTCTCGGTGCTGCAGAATCAGGGCCGAGAGATGATGCTGGTGACCAGTGGAGCCGTCGCCTTCGGCAAACAGCGCCTGCGCCATGAGATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCACTCAGGACAGAACCATCTGAAGGAGATG ggcagaacaataagaaactttggtgctgtacgtcctggtattttcctcagGTCTCAGTCTTACAAAATCAGGGCCGAGAGATGATGCTAGTAACCAGTGGGGCGGTTGCTTTGGGCAAACAGCGCCTCCGCCATGAAATCCTACTGTCTCAGAGTGTCCGCCAGGCCTTACATTCAGGCCAGAACCATCTGAAGGAGATGgtgtgtgtttgggactattatgagcttgctctgggactattatgagcttg #### Aldh1a1_ID4794_7 --> 0 - 0 Original Alignment GCAGGGTTTCCTCCTGGCGTGGTAAACATTGTCCCTGGTTATGGGCCAACTGCAGGGGCAGCCATCTCCTCTCACATGGATGTCGACAAGGTGGCCTTCACTGGATCAACACAG ctagaatatgtgatcactcacatcttcatgtgattacctgacccatacagGCTGGATTTCCCCCTGGTGTGATAAACATTGTACCTGGTTATGGCCCAACAACAGGGGCAGCCATCTCATCACATATGGATGTCGACAAGGTGGCCTTCACTGGTTTGACACAAgtaacactatcactacttggtgagtattctatagaaagactaatgcccta Alignment from CESAR GCAGGGTTTCCTCCTGGCGTGGTAAACATTGTCCCTGGTTATGGGCCAACTGCAGGGGCAGCCATCTCCTCTCACATGGATGTCGACAAGGTGGCCTTCACTGGATCAACACAG ctagaatatgtgatcactcacatcttcatgtgattacctgacccatacagGCTGGATTTCCCCCTGGTGTGATAAACATTGTACCTGGTTATGGCCCAACAACAGGGGCAGCCATCTCATCACATATGGATGTCGACAAGGTGGCCTTCACTGGTTTGACACAAgtaacactatcactacttggtgagtattctatagaaagactaatgcccta Alignment from Spaln_aa2Genome GCAGGGTTTCCTCCTGGCGTGGTAAACATTGTCCCTGGTTATGGGCCAACTGCAGGGGCAGCCATCTCCTCTCACATGGATGTCGACAAGGTGGCCTTCACTGGATCAACACAG ctagaatatgtgatcactcacatcttcatgtgattacctgacccatacagGCTGGATTTCCCCCTGGTGTGATAAACATTGTACCTGGTTATGGCCCAACAACAGGGGCAGCCATCTCATCACATATGGATGTCGACAAGGTGGCCTTCACTGGTTTGACACAAgtaacactatcactacttggtgagtattctatagaaagactaatgcccta Alignment from Spaln_nt2Genome GCAGGGTTTCCTCCTGGCGTGGTAAACATTGTCCCTGGTTATGGGCCAACTGCAGGGGCAGCCATCTCCTCTCACATGGATGTCGACAAGGTGGCCTTCACTGGATCAACACAG ctagaatatgtgatcactcacatcttcatgtgattacctgacccatacagGCTGGATTTCCCCCTGGTGTGATAAACATTGTACCTGGTTATGGCCCAACAACAGGGGCAGCCATCTCATCACATATGGATGTCGACAAGGTGGCCTTCACTGGTTTGACACAAgtaacactatcactacttggtgagtattctatagaaagactaatgcccta Alignment from Pairagon GCAGGGTTTCCTCCTGGCGTGGTAAACATTGTCCCTGGTTATGGGCCAACTGCAGGGGCAGCCATCTCCTCTCACATGGATGTCGACAAGGTGGCCTTCACTGGATCAACACAG ctagaatatgtgatcactcacatcttcatgtgattacctgacccatacagGCTGGATTTCCCCCTGGTGTGATAAACATTGTACCTGGTTATGGCCCAACAACAGGGGCAGCCATCTCATCACATATGGATGTCGACAAGGTGGCCTTCACTGGTTTGACACAAgtaacactatcactacttggtgagtattctatagaaagactaatgcccta Alignment from Exonerate_protein2genome GCAGGGTTTCCTCCTGGCGTGGTAAACATTGTCCCTGGTTATGGGCCAACTGCAGGGGCAGCCATCTCCTCTCACATGGATGTCGACAAGGTGGCCTTCACTGGATCAACACAG ctagaatatgtgatcactcacatcttcatgtgattacctgacccatacagGCTGGATTTCCCCCTGGTGTGATAAACATTGTACCTGGTTATGGCCCAACAACAGGGGCAGCCATCTCATCACATATGGATGTCGACAAGGTGGCCTTCACTGGTTTGACACAAgtaacactatcactacttggtgagtattctatagaaagactaatgcccta Alignment from Exonerate_coding2genome GCAGGGTTTCCTCCTGGCGTGGTAAACATTGTCCCTGGTTATGGGCCAACTGCAGGGGCAGCCATCTCCTCTCACATGGATGTCGACAAGGTGGCCTTCACTGGATCAACACAG ctagaatatgtgatcactcacatcttcatgtgattacctgacccatacagGCTGGATTTCCCCCTGGTGTGATAAACATTGTACCTGGTTATGGCCCAACAACAGGGGCAGCCATCTCATCACATATGGATGTCGACAAGGTGGCCTTCACTGGTTTGACACAAgtaacactatcactacttggtgagtattctatagaaagactaatgcccta Alignment from GeneWise GCAGGGTTTCCTCCTGGCGTGGTAAACATTGTCCCTGGTTATGGGCCAACTGCAGGGGCAGCCATCTCCTCTCACATGGATGTCGACAAGGTGGCCTTCACTGGATCAACACAG ctagaatatgtgatcactcacatcttcatgtgattacctgacccatacagGCTGGATTTCCCCCTGGTGTGATAAACATTGTACCTGGTTATGGCCCAACAACAGGGGCAGCCATCTCATCACATATGGATGTCGACAAGGTGGCCTTCACTGGTTTGACACAAgtaacactatcactacttggtgagtattctatagaaagactaatgcccta #### Aldh3b1_ID199_8 --> 0 - 1 Original Alignment GTTATCAAACAGGTGTTGGCCCGGACCAGCAGCGGGGGATTCTGTGGGAATGATGGCTTCATGCACATGACCCTGTCCAGCCTTCCTTTTGGAGGAGTGg ctctgtgtcacagcccaggcctagacaacagtgtggcctctgtgttgcagGTTATCAGACAAGTGTTAACACCAACAAGCAGTGGAGGGTTCTGTGGTAATGATGGTTTCACGCACATGACCCTCTCCAGCATCCCTTTTGGTGGGGTTggtaagcatgcaggtttatcttgggttcccaatgtagtctacttcatgtcc Alignment from CESAR GTTATCAAACAGGTGTTGGCCCGGACCAGCAGCGGGGGATTCTGTGGGAATGATGGCTTCATGCACATGACCCTGTCCAGCCTTCCTTTTGGAGGAGTGg ctctgtgtcacagcccaggcctagacaacagtgtggcctctgtgttgcagGTTATCAGACAAGTGTTAACACCAACAAGCAGTGGAGGGTTCTGTGGTAATGATGGTTTCACGCACATGACCCTCTCCAGCATCCCTTTTGGTGGGGTTggtaagcatgcaggtttatcttgggttcccaatgtagtctacttcatgtcc Alignment from Spaln_aa2Genome GTTATCAAACAGGTGTTGGCCCGGACCAGCAGCGGGGGATTCTGTGGGAATGATGGCTTCATGCACATGACCCTGTCCAGCCTTCCTTTTGGAGGAGTGG ctctgtgtcacagcccaggcctagacaacagtgtggcctctgtgttgcagGTTATCAGACAAGTGTTAACACCAACAAGCAGTGGAGGGTTCTGTGGTAATGATGGTTTCACGCACATGACCCTCTCCAGCATCCCTTTTGGTGGGGTTGgtaagcatgcaggtttatcttgggttcccaatgtagtctacttcatgtcc Alignment from Spaln_nt2Genome GTTATCAAACAGGTGTTGGCCCGGACCAGCAGCGGGGGATTCTGTGGGAATGATGGCTTCATGCACATGACCCTGTCCAGCCTTCCTTTTGGAGGAGTGG ctctgtgtcacagcccaggcctagacaacagtgtggcctctgtgttgcagGTTATCAGACAAGTGTTAACACCAACAAGCAGTGGAGGGTTCTGTGGTAATGATGGTTTCACGCACATGACCCTCTCCAGCATCCCTTTTGGTGGGGTTGgtaagcatgcaggtttatcttgggttcccaatgtagtctacttcatgtcc Alignment from Pairagon GTTATCAAACAGGTGTTGGCCCGGACCAGCAGCGGGGGATTCTGTGGGAATGATGGCTTCATGCACATGACCCTGTCCAGCCTTCCTTTTGGAGGAGTGG ctctgtgtcacagcccaggcctagacaacagtgtggcctctgtgttgcagGTTATCAGACAAGTGTTAACACCAACAAGCAGTGGAGGGTTCTGTGGTAATGATGGTTTCACGCACATGACCCTCTCCAGCATCCCTTTTGGTGGGGTTGgtaagcatgcaggtttatcttgggttcccaatgtagtctacttcatgtcc Alignment from Exonerate_protein2genome GTTATCAAACAGGTGTTGGCCCGGACCAGCAGCGGGGGATTCTGTGGGAATGATGGCTTCATGCACATGACCCTGTCCAGCCTTCCTTTTGGAGGAGTGG ctctgtgtcacagcccaggcctagacaacagtgtggcctctgtgttgcagGTTATCAGACAAGTGTTAACACCAACAAGCAGTGGAGGGTTCTGTGGTAATGATGGTTTCACGCACATGACCCTCTCCAGCATCCCTTTTGGTGGGGTTGgtaagcatgcaggtttatcttgggttcccaatgtagtctacttcatgtcc Alignment from Exonerate_coding2genome GTTATCAAACAGGTGTTGGCCCGGACCAGCAGCGGGGGATTCTGTGGGAATGATGGCTTCATGCACATGACCCTGTCCAGCCTTCCTTTTGGAGGAGTGG ctctgtgtcacagcccaggcctagacaacagtgtggcctctgtgttgcagGTTATCAGACAAGTGTTAACACCAACAAGCAGTGGAGGGTTCTGTGGTAATGATGGTTTCACGCACATGACCCTCTCCAGCATCCCTTTTGGTGGGGTTGgtaagcatgcaggtttatcttgggttcccaatgtagtctacttcatgtcc Alignment from GeneWise GTTATCAAACAGGTGTTGGCCCGGACCAGCAGCGGGGGATTCTGTGGGAATGATGGCTTCATGCACATGACCCTGTCCAGCCTTCCTTTTGGAGGAGTGG ctctgtgtcacagcccaggcctagacaacagtgtggcctctgtgttgcagGTTATCAGACAAGTGTTAACACCAACAAGCAGTGGAGGGTTCTGTGGTAATGATGGTTTCACGCACATGACCCTCTCCAGCATCCCTTTTGGTGGGGTTGgtaagcatgcaggtttatcttgggttcccaatgtagtctacttcatgtcc #### Ankrd13d_ID461_12 --> 2 - 1 Original Alignment agATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAg gtacaaaattacatgttactgggtacttattcctttctcctctgtaacagaaATTGCCCTCTTCCATGTTCACAATGCCCACACCACCTTTAGTAACCTATGCAGCTGTGATGAACCTGTG---TCAGTGTGTGTCCCCAACTCCAGTCTGGCAATTTCTGCTTTGggtgagactatagccataccagctgtctgtagccataccagccatctggat Alignment from CESAR agATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAg gtacaaaattacatgttactgggtacttattcctttctcctctgtaacagaaATTGCCCTCTTCCATGTTCACAATGCCCACACCACCTTTAGTAACCTATGCAGCTGTGATGAACCTGTG---TCAGTGTGTGTCCCCAACTCCAGTCTGGCAATTTCTGCTTTGggtgagactatagccataccagctgtctgtagccataccagccatctggat Alignment from Spaln_aa2Genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG gtacaaaattacatgttactgggtacttattcctttctcctctgtaacagAAATTGCCCTCTTCCATGTTCACAATGCCCACACCACCTTTAGTAACCTATGCAGCTGTGATGAACCTGTG---TCAGTGTGTGTCCCCAACTCCAGTCTGGCAATTTCTGCTTTGGgtgagactatagccataccagctgtctgtagccataccagccatctggat Alignment from Spaln_nt2Genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG gtacaaaattacatgttactgggtacttattcctttctcctctgtaacagAAATTGCCCTCTTCCATGTTCACAATGCCCACACCACCTTTAGTAACCTATGCAGCTGTGATGAACCTGTG---TCAGTGTGTGTCCCCAACTCCAGTCTGGCAATTTCTGCTTTGGgtgagactatagccataccagctgtctgtagccataccagccatctggat Alignment from Pairagon AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG gtacaaaattacatgttactgggtacttattcctttctcctctgtaacagAAATTGCCCTCTTCCATGTTCACAATGCCCACACCACCTTTAGTAACCTATGCAGCTGTGATGAACCTGTG---TCAGTGTGTGTCCCCAACTCCAGTCTGGCAATTTCTGCTTTGGgtgagactatagccataccagctgtctgtagccataccagccatctggat Alignment from Exonerate_protein2genome gtacaaaattacatgttactgggtacttattcctttctcctctgtaacagaaattgccctcttccatgttcacaatgcccacaccacctttagtaacctatgcagctgtgatgaacctgtgtcagtgtgtgtccccaactccagtctggcaatttctgctttgggtgagactatagccataccagctgtctgtagccataccagccatctggat Alignment from Exonerate_coding2genome gtacaaaattacatgttactgggtacttattcctttctcctctgtaacagaaattgccctcttccatgttcacaatgcccacaccacctttagtaacctatgcagctgtgatgaacctgtgtcagtgtgtgtccccaactccagtctggcaatttctgctttgggtgagactatagccataccagctgtctgtagccataccagccatctggat Alignment from GeneWise -------------------------------------------------GAGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG GTACAAAATTACATGTTACTGGGTACTTATTCCTTTCTCCTCTGTAACAGAAATTGCCCTCTTCCATGTTCACAATGCCCACACCACCTTTAGTAACCTATGCAGCTGTGATGAACCTGTGTCA---GTGTGTGTCCCCAACTCCAGTCTGGCAATTTCTGCTTTGGgtgagactatagccataccagctgtctgtagccataccagccatctggat #### Ankrd13d_ID462_11 --> 1 - 1 Original Alignment gTTCAAGGCAACACTGTGGCTAAGTGAGGAGCACCCACTGTCCTTGGGTGACCAGGTGACACCCATCATTGACCTGATGGCCATCAGCAACGCTCATTTTGCCAAGCTACGGGATTTCATCACTCTGCGTCTCCCACCAGGCTTCCCTGTCAAGATTg cacttgagttgagtatggatataggtgttgaaggttctctgtcctttcagaTTCAAAGCAACACTGTGGCTAAGTGAGGAGCACCCCCTGGCCCTGGGTGAACAGGTCACTCCCATCATCAGTCTAATGGCCATCAGCAAC------------------CAAGATTTCATAAGTCTTCGTCTCCCCCCTGGCTTTCCTGTAAAAATTggtgagtgggcaggcattgttggaatgtgggctaggtacaaaattacatgt Alignment from CESAR gTTCAAGGCAACACTGTGGCTAAGTGAGGAGCACCCACTGTCCTTGGGTGACCAGGTGACACCCATCATTGACCTGATGGCCATCAGCAACGCTCATTTTGCCAAGCTACGGGATTTCATCACTCTGCGTCTCCCACCAGGCTTCCCTGTCAAGATTg cacttgagttgagtatggatataggtgttgaaggttctctgtcctttcagaTTCAAAGCAACACTGTGGCTAAGTGAGGAGCACCCCCTGGCCCTGGGTGAACAGGTCACTCCCATCATCAGTCTAATGGCCATCAGCAAC------------------CAAGATTTCATAAGTCTTCGTCTCCCCCCTGGCTTTCCTGTAAAAATTggtgagtgggcaggcattgttggaatgtgggctaggtacaaaattacatgt Alignment from Spaln_aa2Genome GTTCAAGGCAACACTGTGGCTAAGTGAGGAGCACCCACTGTCCTTGGGTGACCAGGTGACACCCATCATTGACCTGATGGCCATCAGCAACGCTCATTTTGCCAAGCTACGGGATTTCATCACTCTGCGTCTCCCACCAGGCTTCCCTGTCAAGATTG cacttgagttgagtatggatataggtgttgaaggttctctgtcctttcagATTCAAAGCAACACTGTGGCTAAGTGAGGAGCACCCCCTGGCCCTGGGTGAACAGGTCACTCCCATCATCAGTCTAATGGCCATCAGCAAC------------------CAAGATTTCATAAGTCTTCGTCTCCCCCCTGGCTTTCCTGTAAAAATTGgtgagtgggcaggcattgttggaatgtgggctaggtacaaaattacatgt Alignment from Spaln_nt2Genome GTTCAAGGCAACACTGTGGCTAAGTGAGGAGCACCCACTGTCCTTGGGTGACCAGGTGACACCCATCATTGACCTGATGGCCATCAGCAACGCTCATTTTGCCAAGCTACGGGATTTCATCACTCTGCGTCTCCCACCAGGCTTCCCTGTCAAGATTG cacttgagttgagtatggatataggtgttgaaggttctctgtcctttcagATTCAAAGCAACACTGTGGCTAAGTGAGGAGCACCCCCTGGCCCTGGGTGAACAGGTCACTCCCATCATCAGTCTAATGGCCATCAGCAA-----------CCAA-------GATTTCATAAGTCTTCGTCTCCCCCCTGGCTTTCCTGTAAAAATTGgtgagtgggcaggcattgttggaatgtgggctaggtacaaaattacatgt Alignment from Pairagon GTTCAAGGCAACACTGTGGCTAAGTGAGGAGCACCCACTGTCCTTGGGTGACCAGGTGACACCCATCATTGACCTGATGGCCATCAGCAACGCTCATTTTGCCAAGCTACGGGATTTCATCACTCTGCGTCTCCCACCAGGCTTCCCTGTCAAGATTG cacttgagttgagtatggatataggtgttgaaggttctctgtcctttcagATTCAAAGCAACACTGTGGCTAAGTGAGGAGCACCCCCTGGCCCTGGGTGAACAGGTCACTCCCATCATCAGTCTAATGGCCATCAGCAAC------------------CAAGATTTCATAAGTCTTCGTCTCCCCCCTGGCTTTCCTGTAAAAATTGgtgagtgggcaggcattgttggaatgtgggctaggtacaaaattacatgt Alignment from Exonerate_protein2genome GTTCAAGGCAACACTGTGGCTAAGTGAGGAGCACCCACTGTCCTTGGGTGACCAGGTGACACCCATCATTGACCTGATGGCCATCAGCAACGCTCATTTTGCCAAGCTACGG cacttgagttgagtatggatataggtgttgaaggttctctgtcctttcagATTCAAAGCAACACTGTGGCTAAGTGAGGAGCACCCCCTGGCCCTGGGTGAACAGGTCACTCCCATCATCAGTCTAATGGCCATCAGCAACCAAGATTTCATAAGTCTTCGTctcccccctggctttcctgtaaaaattggtgagtgggcaggcattgttggaatgtgggctaggtacaaaattacatgt Alignment from Exonerate_coding2genome GTTCAAGGCAACACTGTGGCTAAGTGAGGAGCACCCACTGTCCTTGGGTGACCAGGTGACACCCATCATTGACCTGATGGCCATCAGCAACGCTCATTTTGCCAAGCTACGG cacttgagttgagtatggatataggtgttgaaggttctctgtcctttcagATTCAAAGCAACACTGTGGCTAAGTGAGGAGCACCCCCTGGCCCTGGGTGAACAGGTCACTCCCATCATCAGTCTAATGGCCATCAGCAACCAAGATTTCATAAGTCTTCGTctcccccctggctttcctgtaaaaattggtgagtgggcaggcattgttggaatgtgggctaggtacaaaattacatgt Alignment from GeneWise GTTCAAGGCAACACTGTGGCTAAGTGAGGAGCACCCACTGTCCTTGGGTGACCAGGTGACACCCATCATTGACCTGATGGCCATCAGCAACGCTCATTTTGCCAAGCTACGGGATTTCATCACTCTGCGTCTCCCACCAGGCTTCCCTGTCAAGATTG cacttgagttgagtatggatataggtgttgaaggttctctgtcctttcagATTCAAAGCAACACTGTGGCTAAGTGAGGAGCACCCCCTGGCCCTGGGTGAACAGGTCACTCCCATCATCAGTCTAATGGCCATCAGCAAC------------------CAAGATTTCATAAGTCTTCGTCTCCCCCCTGGCTTTCCTGTAAAAATTGgtgagtgggcaggcattgttggaatgtgggctaggtacaaaattacatgt #### Ankrd13d_ID467_6 --> 2 - 2 Original Alignment agGCGGGAGCCTTGGTGATGGAAGTGGATCATGACCGGCAGGTGGTGCACACAGAGACCCTAGCTCCAGCTCTGCATGAACCAGAAGCGCTGCTGGCTGCCATGCGGCCTAGTGAGGAG------CACGTGGCCAGTCGGCTCACCTCTCCTATTGTCTCCACCCACCTGGACACTCGCAATGTAGCCTTTGAGag ccattaccactaactccctgaacatgaagagtcttcatactttctttcagacGCAGGGACCTCGGTAATGGAAATTGAGCATGACCGCAAGGTAGTGCACAAAGAGTCCCTGGCACCAGCCCTCGAGGACCCTGATACACTACTGGCT---ATGCAG---AGA---GAGCACGTGAATGTGATGAGTCAACTGACATCTTCTATAGTGTCCACCCACCTGGACACTTGTAATGTAGCATGCGAGaggtttgtcataagctgtactatctgtgctagtggaagggcagagtgatgag Alignment from CESAR agGCGGGAGCCTTGGTGATGGAAGTGGATCATGACCGGCAGGTGGTGCACACAGAGACCCTAGCTCCAGCTCTGCATGAACCAGAAGCGCTGCTGGCTGCCATGCGGCCTAGTGAGGAGCACGTG------GCCAGTCGGCTCACCTCTCCTATTGTCTCCACCCACCTGGACACTCGCAATGTAGCCTTTGAGag ccattaccactaactccctgaacatgaagagtcttcatactttctttcagacGCAGGGACCTCGGTAATGGAAATTGAGCATGACCGCAAGGTAGTGCACAAAGAGTCCCTGGCACCAGCCCTCGAGGACCCTGATACACTACTGGCTATGCAGAGA---------GAGCACGTGAATGTGATGAGTCAACTGACATCTTCTATAGTGTCCACCCACCTGGACACTTGTAATGTAGCATGCGAGaggtttgtcataagctgtactatctgtgctagtggaagggcagagtgatgag Alignment from Spaln_aa2Genome AGGCGGGAGCCTTGGTGATGGAAGTGGATCATGACCGGCAGGTGGTGCACACAGAGACCCTAGCTCCAGCTCTGCATGAACCAGAAGCGCTGCTGGCTGCCATGCGGCCTAGTGAGGAGCACGTGGCCAGTCGGCTCACCTCTCCTATTGTCTCCACCCACCTGGACACTCGCAATGTAGCCTTTGAGAG ccattaccactaactccctgaacatgaagagtcttcatactttctttcagACGCAGGGACCTCGGTAATGGAAATTGAGCATGACCGCAAGGTAGTGCACAAAGAGTCCCTGGCACCAGCCCTCGAGGACCCTGATACACTACTG---GCTATGCAGAGAGAGCACGTGAATGTGATGAGTCAACTGACATCTTCTATAGTGTCCACCCACCTGGACACTTGTAATGTAGCATGCGAGAGgtttgtcataagctgtactatctgtgctagtggaagggcagagtgatgag Alignment from Spaln_nt2Genome AGGCGGGAGCCTTGGTGATGGAAGTGGATCATGACCGGCAGGTGGTGCACACAGAGACCCTAGCTCCAGCTCTGCATGAACCAGAAGCGCTGCTGGCTGCCATGCGGCCTAGTGAGGAGCACGTGGCCAGTCGGCTCACCTCTCCTATTGTCTCCACCCACCTGGACACTCGCAATGTAGCCTTTGAGAG ccattaccactaactccctgaacatgaagagtcttcatactttctttcagACGCAGGGACCTCGGTAATGGAAATTGAGCATGACCGCAAGGTAGTGCACAAAGAGTCCCTGGCACCAGCCCTCGAGGACCCTGATACACTACTGGCT---ATGCAGAGAGAGCACGTGAATGTGATGAGTCAACTGACATCTTCTATAGTGTCCACCCACCTGGACACTTGTAATGTAGCATGCGAGAGgtttgtcataagctgtactatctgtgctagtggaagggcagagtgatgag Alignment from Pairagon AGGCGGGAGCCTTGGTGATGGAAGTGGATCATGACCGGCAGGTGGTGCACACAGAGACCCTAGCTCCAGCTCTGCATGAACCAGAAGCGCTGCTGGC--------------------------TGCCATGCGGCCTAGTGAGGAGCACGTGGCCAGTCGGCTCACCTCTCCTATTGTCTCCACCCACCTGGACACTCGCAATGTAGCCTTTGAGAG ccattaccactaactccctgaacatgaagagtcttcatactttctttcagACGCAGGGACCTCGGTAATGGAAATTGAGCATGACCGCAAGGTAGTGCACAAAGAGTCCCTGGCACCAGCCCTCGAGGACCCTGATACACTACTGGCTATGCAGAGAGAGCACGTGAATGTGATG-----------------------------AGTCAACTGACATCTTCTATAGTGTCCACCCACCTGGACACTTGTAATGTAGCATGCGAGAGgtttgtcataagctgtactatctgtgctagtggaagggcagagtgatgag Alignment from Exonerate_protein2genome AGGCGGGAGCCTTGGTGATGGAAGTGGATCATGACCGGCAGGTGGTGCACACAGAGACCCTAGCTCCAGCTCTGCATGAACCAGAAGCGCTGCTGGCTGCCATGCGGCCTAGTGAGGAGCACGTGGCCAGTCGGCTCACCTCTCCTATTGTCTCCACCCACCTGGACACTCGCAATGTAGCCTTTGAGAG ccattaccactaactccctgaacatgaagagtcttcatactttctttcagACGCAGGGACCTCGGTAATGGAAATTGAGCATGACCGCAAGGTAGTGCACAAAGAGTCCCTGGCACCAGCCCTCGAGGACCCTGATACACTACTG---GCTATGCAGAGAGAGCACGTGAATGTGATGAGTCAACTGACATCTTCTATAGTGTCCACCCACCTGGACACTTGTAATGTAGCATGCGAGAGgtttgtcataagctgtactatctgtgctagtggaagggcagagtgatgag Alignment from Exonerate_coding2genome AGGCGGGAGCCTTGGTGATGGAAGTGGATCATGACCGGCAGGTGGTGCACACAGAGACCCTAGCTCCAGCTCTGCATGAACCAGAAGCGCTGCTGGCTGCCATGCGGCCTAGTGAGGAGCACGTGGCCAGTCGGCTCACCTCTCCTATTGTCTCCACCCACCTGGACACTCGCAATGTAGCCTTTGAGAG ccattaccactaactccctgaacatgaagagtcttcatactttctttcagACGCAGGGACCTCGGTAATGGAAATTGAGCATGACCGCAAGGTAGTGCACAAAGAGTCCCTGGCACCAGCCCTCGAGGACCCTGATACACTACTG---GCTATGCAGAGAGAGCACGTGAATGTGATGAGTCAACTGACATCTTCTATAGTGTCCACCCACCTGGACACTTGTAATGTAGCATGCGAGAGgtttgtcataagctgtactatctgtgctagtggaagggcagagtgatgag Alignment from GeneWise AGGCGGGAGCCTTGGTGATGGAAGTGGATCATGACCGGCAGGTGGTGCACACAGAGACCCTAGCTCCAGCTCTGCATGAACCAGAAGCGCTGCTGGCTGCCATGCGGCCTAGTGAGGAGCACGTGGCCAGTCGGCTCACCTCTCCTATTGTCTCCACCCACCTGGACACTCGCAATGTAGCCTTTGAG-- ccattaccactaactccctgaacatgaagagtcttcatactttctttcagACGCAGGGACCTCGGTAATGGAAATTGAGCATGACCGCAAGGTAGTGCACAAAGAGTCCCTGGCACCAGCCCTCGAGGACCCTGATACACTACTGGCTATGCAGAGA---GAGCACGTGAATGTGATGAGTCAACTGACATCTTCTATAGTGTCCACCCACCTGGACACTTGTAATGTAGCATGCGAGAGgtttgtcataagctgtactatctgtgctagtggaagggcagagtgatgag #### Ankrd1_ID7097_6 --> 0 - 0 Original Alignment CTTGAATCCACAGCCATCCACTGGGCATGTCGTGGAGGAAACGCAGATGTCCTGAAACTGTTGCTGAACAAAGGAGCCAAAATCAGTGCCAGAGACAAG cacaatgctacattctatcatctctctaaatcccatcaattcttttccagCTGGAGTCCTCAGCTATCCATTGGGCATGTCGTGGAGAAAATGCTGATGTCCTAAAACTACTGCTGAACAAAGGAGCCAAAATAAGTGCCAGAGACAAGgtaagtttttgtccctaaatacacccctcttccttattgaggatatttta Alignment from CESAR CTTGAATCCACAGCCATCCACTGGGCATGTCGTGGAGGAAACGCAGATGTCCTGAAACTGTTGCTGAACAAAGGAGCCAAAATCAGTGCCAGAGACAAG cacaatgctacattctatcatctctctaaatcccatcaattcttttccagCTGGAGTCCTCAGCTATCCATTGGGCATGTCGTGGAGAAAATGCTGATGTCCTAAAACTACTGCTGAACAAAGGAGCCAAAATAAGTGCCAGAGACAAGgtaagtttttgtccctaaatacacccctcttccttattgaggatatttta Alignment from Spaln_aa2Genome CTTGAATCCACAGCCATCCACTGGGCATGTCGTGGAGGAAACGCAGATGTCCTGAAACTGTTGCTGAACAAAGGAGCCAAAATCAGTGCCAGAGACAAG cacaatgctacattctatcatctctctaaatcccatcaattcttttccagCTGGAGTCCTCAGCTATCCATTGGGCATGTCGTGGAGAAAATGCTGATGTCCTAAAACTACTGCTGAACAAAGGAGCCAAAATAAGTGCCAGAGACAAGgtaagtttttgtccctaaatacacccctcttccttattgaggatatttta Alignment from Spaln_nt2Genome CTTGAATCCACAGCCATCCACTGGGCATGTCGTGGAGGAAACGCAGATGTCCTGAAACTGTTGCTGAACAAAGGAGCCAAAATCAGTGCCAGAGACAAG cacaatgctacattctatcatctctctaaatcccatcaattcttttccagCTGGAGTCCTCAGCTATCCATTGGGCATGTCGTGGAGAAAATGCTGATGTCCTAAAACTACTGCTGAACAAAGGAGCCAAAATAAGTGCCAGAGACAAGgtaagtttttgtccctaaatacacccctcttccttattgaggatatttta Alignment from Pairagon CTTGAATCCACAGCCATCCACTGGGCATGTCGTGGAGGAAACGCAGATGTCCTGAAACTGTTGCTGAACAAAGGAGCCAAAATCAGTGCCAGAGACAAG cacaatgctacattctatcatctctctaaatcccatcaattcttttccagCTGGAGTCCTCAGCTATCCATTGGGCATGTCGTGGAGAAAATGCTGATGTCCTAAAACTACTGCTGAACAAAGGAGCCAAAATAAGTGCCAGAGACAAGgtaagtttttgtccctaaatacacccctcttccttattgaggatatttta Alignment from Exonerate_protein2genome CTTGAATCCACAGCCATCCACTGGGCATGTCGTGGAGGAAACGCAGATGTCCTGAAACTGTTGCTGAACAAAGGAGCCAAAATCAGTGCCAGAGACAAG cacaatgctacattctatcatctctctaaatcccatcaattcttttccagCTGGAGTCCTCAGCTATCCATTGGGCATGTCGTGGAGAAAATGCTGATGTCCTAAAACTACTGCTGAACAAAGGAGCCAAAATAAGTGCCAGAGACAAGgtaagtttttgtccctaaatacacccctcttccttattgaggatatttta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTTGAATCCACAGCCATCCACTGGGCATGTCGTGGAGGAAACGCAGATGTCCTGAAACTGTTGCTGAACAAAGGAGCCAAAATCAGTGCCAGAGACAAG cacaatgctacattctatcatctctctaaatcccatcaattcttttccagCTGGAGTCCTCAGCTATCCATTGGGCATGTCGTGGAGAAAATGCTGATGTCCTAAAACTACTGCTGAACAAAGGAGCCAAAATAAGTGCCAGAGACAAGgtaagtttttgtccctaaatacacccctcttccttattgaggatatttta #### Ankrd2_ID8369_3 --> 0 - 0 Original Alignment GGCCAAGAGCGCGTGCGCAAGACATCCCTGGACCTGCGACGTGAGATCATTGATGTGGGTGGGATCCAGAACCTCATTGAACTGAGGAAAAAACGCAAGCAGAAAAAGCGAGATGCCCTGGCTGCAGCCCAGGAGCCTCCTCCAGAGCCAGAGGAGATC agtttacaaaggcactggcattggggttttgcctcctgtgggtgctgtagGGCCAAGAGCATGTCCAAAAAACGTCTCTGCACTTGCGATGTGAAATCATTGATGTG------ATTCAAAACCTGATTGAACTGAGCAGAAAGCAGAGGCCGCAAAAACGAGATGCATTGGCAACAGCTCAAGAATCTCCTCGTAAACCTGAGGAAATCgtgagaatctttagggctgaagagatgaggatggggacaaagtcctgcag Alignment from CESAR GGCCAAGAGCGCGTGCGCAAGACATCCCTGGACCTGCGACGTGAGATCATTGATGTGGGTGGGATCCAGAACCTCATTGAACTGAGGAAAAAACGCAAGCAGAAAAAGCGAGATGCCCTGGCTGCAGCCCAGGAGCCTCCTCCAGAGCCAGAGGAGATC agtttacaaaggcactggcattggggttttgcctcctgtgggtgctgtagGGCCAAGAGCATGTCCAAAAAACGTCTCTGCACTTGCGATGTGAAATCATTGATGTG------ATTCAAAACCTGATTGAACTGAGCAGAAAGCAGAGGCCGCAAAAACGAGATGCATTGGCAACAGCTCAAGAATCTCCTCGTAAACCTGAGGAAATCgtgagaatctttagggctgaagagatgaggatggggacaaagtcctgcag Alignment from Spaln_aa2Genome GGCCAAGAGCGCGTGCGCAAGACATCCCTGGACCTGCGACGTGAGATCATTGATGTGGGTGGGATCCAGAACCTCATTGAACTGAGGAAAAAACGCAAGCAGAAAAAGCGAGATGCCCTGGCTGCAGCCCAGGAGCCTCCTCCAGAGCCAGAGGAGATC agtttacaaaggcactggcattggggttttgcctcctgtgggtgctgtagGGCCAAGAGCATGTCCAAAAAACGTCTCTGCACTTGCGATGTGAAATCATTGATGTG------ATTCAAAACCTGATTGAACTGAGCAGAAAGCAGAGGCCGCAAAAACGAGATGCATTGGCAACAGCTCAAGAATCTCCTCGTAAACCTGAGGAAATCgtgagaatctttagggctgaagagatgaggatggggacaaagtcctgcag Alignment from Spaln_nt2Genome GGCCAAGAGCGCGTGCGCAAGACATCCCTGGACCTGCGACGTGAGATCATTGATGTGGGTGGGATCCAGAACCTCATTGAACTGAGGAAAAAACGCAAGCAGAAAAAGCGAGATGCCCTGGCTGCAGCCCAGGAGCCTCCTCCAGAGCCAGAGGAGATC agtttacaaaggcactggcattggggttttgcctcctgtgggtgctgtagGGCCAAGAGCATGTCCAAAAAACGTCTCTGCACTTGCGATGTGAAATCATTGA------TGTGATTCAAAACCTGATTGAACTGAGCAGAAAGCAGAGGCCGCAAAAACGAGATGCATTGGCAACAGCTCAAGAATCTCCTCGTAAACCTGAGGAAATCgtgagaatctttagggctgaagagatgaggatggggacaaagtcctgcag Alignment from Pairagon GTGCTAGAGGAAGAGAAGCGCCTCGGGGTTCAGAGTCCTGCTTTACAAAAGGTTAAGGGCCAAGAGCGCGTGCGCAAGACATCCCTGGACCTGCGACGTGAGATCATTGATGTGGGTGGGATCCAGAACCTCATTGAACTGAGGAAAAAACGCAAGCAGAAAAAGCGAGATGCCCTGGCTGCAGCCCAGGAGCCTCCTCCAGAGCCAGAGGAGATC agtttacaaaggcactggcattggggttttgcctcctgtgggtgctgtag---------------------------------------------------------GGCCAAGAGCATGTCCAAAAAACGTCTCTGCACTTGCGATGTGAAATCATTGATGT------GATTCAAAACCTGATTGAACTGAGCAGAAAGCAGAGGCCGCAAAAACGAGATGCATTGGCAACAGCTCAAGAATCTCCTCGTAAACCTGAGGAAATCgtgagaatctttagggctgaagagatgaggatggggacaaagtcctgcag Alignment from Exonerate_protein2genome GGCCAAGAGCGCGTGCGCAAGACATCCCTGGACCTGCGACGTGAGATCATTGATGTGGGTGGGATCCAGAACCTCATTGAACTGAGGAAAAAACGCAAGCAGAAAAAGCGAGATGCCCTGGCTGCAGCCCAGGAGCCTCCTCCAGAGCCAGAGGAGATC agtttacaaaggcactggcattggggttttgcctcctgtgggtgctgtagGGCCAAGAGCATGTCCAAAAAACGTCTCTGCACTTGCGATGTGAAATCATTGATGTG------ATTCAAAACCTGATTGAACTGAGCAGAAAGCAGAGGCCGCAAAAACGAGATGCATTGGCAACAGCTCAAGAATCTCCTCGTAAACCTGAGGAAATCgtgagaatctttagggctgaagagatgaggatggggacaaagtcctgcag Alignment from Exonerate_coding2genome GGCCAAGAGCGCGTGCGCAAGACATCCCTGGACCTGCGACGTGAGATCATTGATGTGGGTGGGATCCAGAACCTCATTGAACTGAGGAAAAAACGCAAGCAGAAAAAGCGAGATGCCCTGGCTGCAGCCCAGGAGCCTCCTCCAGAGCCAGAGGAGATC agtttacaaaggcactggcattggggttttgcctcctgtgggtgctgtagGGCCAAGAGCATGTCCAAAAAACGTCTCTGCACTTGCGATGTGAAATCATTGATGTG------ATTCAAAACCTGATTGAACTGAGCAGAAAGCAGAGGCCGCAAAAACGAGATGCATTGGCAACAGCTCAAGAATCTCCTCGTAAACCTGAGGAAATCgtgagaatctttagggctgaagagatgaggatggggacaaagtcctgcag Alignment from GeneWise GGCCAAGAGCGCGTGCGCAAGACATCCCTGGACCTGCGACGTGAGATCATTGATGTGGGTGGGATCCAGAACCTCATTGAACTGAGGAAAAAACGCAAGCAGAAAAAGCGAGATGCCCTGGCTGCAGCCCAGGAGCCTCCTCCAGAGCCAGAGGAGATC-------------------------------------------------- agtttacaaaggcactggcattggggttttgcctcctgtgggtgctgtagGGCCAAGAGCATGTCCAAAAAACGTCTCTGCACTTGCGATGTGAAATCATTGATGTG------ATTCAAAACCTGATTGAACTGAGCAGAAAGCAGAGGCCGCAAAAACGAGATGCATTGGCAACAGCTCAAGAATCTCCTCGTAAACCTGAGGAAATCGTGAGAATCTTTAGGGCTGAAGAGATGAGGATGGGGACAAAGTCCTGCAG #### Ankrd2_ID8371_5 --> 0 - 0 Original Alignment TTCCGTCGGACAGCACTGCATCGGGCCTCCCTGGAGGGACACATGGAGATACTGGAGAAACTTCTGGAGAATGGGGCCACCGTGGACTTCCAGGATCGG cttgtggcctcaagttctagcaccctgaagttggttctcttgttgctcagCTCCGCTGGACAGCACTGGACCAAGCCTCCTTGGAAGGCCACATGGAGATACTGGAGAAACTACTGGAGAATGGTGCAATTGGGGACTTTCAGGATCAGgtgaggggaaggatttgggggagtgacatatcaattgagtctgtagcaac Alignment from CESAR TTCCGTCGGACAGCACTGCATCGGGCCTCCCTGGAGGGACACATGGAGATACTGGAGAAACTTCTGGAGAATGGGGCCACCGTGGACTTCCAGGATCGG cttgtggcctcaagttctagcaccctgaagttggttctcttgttgctcagCTCCGCTGGACAGCACTGGACCAAGCCTCCTTGGAAGGCCACATGGAGATACTGGAGAAACTACTGGAGAATGGTGCAATTGGGGACTTTCAGGATCAGgtgaggggaaggatttgggggagtgacatatcaattgagtctgtagcaac Alignment from Spaln_aa2Genome TTCCGTCGGACAGCACTGCATCGGGCCTCCCTGGAGGGACACATGGAGATACTGGAGAAACTTCTGGAGAATGGGGCCACCGTGGACTTCCAGGATCGG cttgtggcctcaagttctagcaccctgaagttggttctcttgttgctcagCTCCGCTGGACAGCACTGGACCAAGCCTCCTTGGAAGGCCACATGGAGATACTGGAGAAACTACTGGAGAATGGTGCAATTGGGGACTTTCAGGATCAGgtgaggggaaggatttgggggagtgacatatcaattgagtctgtagcaac Alignment from Spaln_nt2Genome TTCCGTCGGACAGCACTGCATCGGGCCTCCCTGGAGGGACACATGGAGATACTGGAGAAACTTCTGGAGAATGGGGCCACCGTGGACTTCCAGGATCGG cttgtggcctcaagttctagcaccctgaagttggttctcttgttgctcagCTCCGCTGGACAGCACTGGACCAAGCCTCCTTGGAAGGCCACATGGAGATACTGGAGAAACTACTGGAGAATGGTGCAATTGGGGACTTTCAGGATCAGgtgaggggaaggatttgggggagtgacatatcaattgagtctgtagcaac Alignment from Pairagon TTCCGTCGGACAGCACTGCATCGGGCCTCCCTGGAGGGACACATGGAGATACTGGAGAAACTTCTGGAGAATGGGGCCACCGTGGACTTCCAGGATCGG cttgtggcctcaagttctagcaccctgaagttggttctcttgttgctcagCTCCGCTGGACAGCACTGGACCAAGCCTCCTTGGAAGGCCACATGGAGATACTGGAGAAACTACTGGAGAATGGTGCAATTGGGGACTTTCAGGATCAGgtgaggggaaggatttgggggagtgacatatcaattgagtctgtagcaac Alignment from Exonerate_protein2genome TTCCGTCGGACAGCACTGCATCGGGCCTCCCTGGAGGGACACATGGAGATACTGGAGAAACTTCTGGAGAATGGGGCCACCGTGGACTTCCAGGATCGG cttgtggcctcaagttctagcaccctgaagttggttctcttgttgctcagCTCCGCTGGACAGCACTGGACCAAGCCTCCTTGGAAGGCCACATGGAGATACTGGAGAAACTACTGGAGAATGGTGCAATTGGGGACTTTCAGGATCAGgtgaggggaaggatttgggggagtgacatatcaattgagtctgtagcaac Alignment from Exonerate_coding2genome TTCCGTCGGACAGCACTGCATCGGGCCTCCCTGGAGGGACACATGGAGATACTGGAGAAACTTCTGGAGAATGGGGCCACCGTGGACTTCCAGGATCGG cttgtggcctcaagttctagcaccctgaagttggttctcttgttgctcagCTCCGCTGGACAGCACTGGACCAAGCCTCCTTGGAAGGCCACATGGAGATACTGGAGAAACTACTGGAGAATGGTGCAATTGGGGACTTTCAGGATCAGgtgaggggaaggatttgggggagtgacatatcaattgagtctgtagcaac Alignment from GeneWise TTCCGTCGGACAGCACTGCATCGGGCCTCCCTGGAGGGACACATGGAGATACTGGAGAAACTTCTGGAGAATGGGGCCACCGTGGACTTCCAGGATCGG cttgtggcctcaagttctagcaccctgaagttggttctcttgttgctcagCTCCGCTGGACAGCACTGGACCAAGCCTCCTTGGAAGGCCACATGGAGATACTGGAGAAACTACTGGAGAATGGTGCAATTGGGGACTTTCAGGATCAGgtgaggggaaggatttgggggagtgacatatcaattgagtctgtagcaac #### Ankrd2_ID8372_6 --> 0 - 0 Original Alignment CTGGACTGCACAGCCATGCACTGGGCCTGCCGTGGGGGCCACCTGGAGGTGGTGAGACTCCTGCAAAGCCGGGGGGCCGACACCAACGTGAGAGACAAG aacaatatgatgactcccttaaatacatgtttcttgtgtgcttttcccagCTGGATTGCACAGCTATGCACTGGGCTTGTCATGGGGGGCACCTAGAGGTGGTGAGACTCCTGGAAAGTCGGGGGGCTGATGCTAATGTGCGAGACAAAgtaagtacttctagattagattggatgtgtaaatcgtcttgtatgtgccc Alignment from CESAR CTGGACTGCACAGCCATGCACTGGGCCTGCCGTGGGGGCCACCTGGAGGTGGTGAGACTCCTGCAAAGCCGGGGGGCCGACACCAACGTGAGAGACAAG aacaatatgatgactcccttaaatacatgtttcttgtgtgcttttcccagCTGGATTGCACAGCTATGCACTGGGCTTGTCATGGGGGGCACCTAGAGGTGGTGAGACTCCTGGAAAGTCGGGGGGCTGATGCTAATGTGCGAGACAAAgtaagtacttctagattagattggatgtgtaaatcgtcttgtatgtgccc Alignment from Spaln_aa2Genome CTGGACTGCACAGCCATGCACTGGGCCTGCCGTGGGGGCCACCTGGAGGTGGTGAGACTCCTGCAAAGCCGGGGGGCCGACACCAACGTGAGAGACAAG aacaatatgatgactcccttaaatacatgtttcttgtgtgcttttcccagCTGGATTGCACAGCTATGCACTGGGCTTGTCATGGGGGGCACCTAGAGGTGGTGAGACTCCTGGAAAGTCGGGGGGCTGATGCTAATGTGCGAGACAAAgtaagtacttctagattagattggatgtgtaaatcgtcttgtatgtgccc Alignment from Spaln_nt2Genome CTGGACTGCACAGCCATGCACTGGGCCTGCCGTGGGGGCCACCTGGAGGTGGTGAGACTCCTGCAAAGCCGGGGGGCCGACACCAACGTGAGAGACAAG aacaatatgatgactcccttaaatacatgtttcttgtgtgcttttcccagCTGGATTGCACAGCTATGCACTGGGCTTGTCATGGGGGGCACCTAGAGGTGGTGAGACTCCTGGAAAGTCGGGGGGCTGATGCTAATGTGCGAGACAAAgtaagtacttctagattagattggatgtgtaaatcgtcttgtatgtgccc Alignment from Pairagon CTGGACTGCACAGCCATGCACTGGGCCTGCCGTGGGGGCCACCTGGAGGTGGTGAGACTCCTGCAAAGCCGGGGGGCCGACACCAACGTGAGAGACAAG aacaatatgatgactcccttaaatacatgtttcttgtgtgcttttcccagCTGGATTGCACAGCTATGCACTGGGCTTGTCATGGGGGGCACCTAGAGGTGGTGAGACTCCTGGAAAGTCGGGGGGCTGATGCTAATGTGCGAGACAAAgtaagtacttctagattagattggatgtgtaaatcgtcttgtatgtgccc Alignment from Exonerate_protein2genome CTGGACTGCACAGCCATGCACTGGGCCTGCCGTGGGGGCCACCTGGAGGTGGTGAGACTCCTGCAAAGCCGGGGGGCCGACACCAACGTGAGAGACAAG aacaatatgatgactcccttaaatacatgtttcttgtgtgcttttcccagCTGGATTGCACAGCTATGCACTGGGCTTGTCATGGGGGGCACCTAGAGGTGGTGAGACTCCTGGAAAGTCGGGGGGCTGATGCTAATGTGCGAGACAAAgtaagtacttctagattagattggatgtgtaaatcgtcttgtatgtgccc Alignment from Exonerate_coding2genome CTGGACTGCACAGCCATGCACTGGGCCTGCCGTGGGGGCCACCTGGAGGTGGTGAGACTCCTGCAAAGCCGGGGGGCCGACACCAACGTGAGAGACAAG aacaatatgatgactcccttaaatacatgtttcttgtgtgcttttcccagCTGGATTGCACAGCTATGCACTGGGCTTGTCATGGGGGGCACCTAGAGGTGGTGAGACTCCTGGAAAGTCGGGGGGCTGATGCTAATGTGCGAGACAAAgtaagtacttctagattagattggatgtgtaaatcgtcttgtatgtgccc Alignment from GeneWise CTGGACTGCACAGCCATGCACTGGGCCTGCCGTGGGGGCCACCTGGAGGTGGTGAGACTCCTGCAAAGCCGGGGGGCCGACACCAACGTGAGAGACAAG aacaatatgatgactcccttaaatacatgtttcttgtgtgcttttcccagCTGGATTGCACAGCTATGCACTGGGCTTGTCATGGGGGGCACCTAGAGGTGGTGAGACTCCTGGAAAGTCGGGGGGCTGATGCTAATGTGCGAGACAAAgtaagtacttctagattagattggatgtgtaaatcgtcttgtatgtgccc #### Anxa1_ID4762_8 --> 0 - 1 Original Alignment GCTTTGTATGAAGCTGGAGAAAGGAGAAAGGGGACAGACGTGAACGTCTTCACCACAATTCTGACCAGCAGG---AGCTTTCCTCATCTTCGCAGAg gatacaactaacctatcctcacccactagacctgtccctccttactgcagGGTTTGTATGAGGCTGGAGAAAGAAGAAAGGGGACTGATGTGAATGTCTTTACCACGATACTGGTAAGCAGAAGATGCTACCCCTACCTCTGCCGGggtaagagtgcggcctttcatatatgcattgcctatatcttaaactatcat Alignment from CESAR GCTTTGTATGAAGCTGGAGAAAGGAGAAAGGGGACAGACGTGAACGTCTTCACCACAATTCTGACCAGCAGG---AGCTTTCCTCATCTTCGCAGAg gatacaactaacctatcctcacccactagacctgtccctccttactgcagGGTTTGTATGAGGCTGGAGAAAGAAGAAAGGGGACTGATGTGAATGTCTTTACCACGATACTGGTAAGCAGAAGATGCTACCCCTACCTCTGCCGGggtaagagtgcggcctttcatatatgcattgcctatatcttaaactatcat Alignment from Spaln_aa2Genome GCTTTGTATGAAGCTGGAGAAAGGAGAAAGGGGACAGACGTGAACGTCTTCACCACAATTCTGACCAGC---AGGAGCTTTCCTCATCTTCGCAGAG gatacaactaacctatcctcacccactagacctgtccctccttactgcagGGTTTGTATGAGGCTGGAGAAAGAAGAAAGGGGACTGATGTGAATGTCTTTACCACGATACTGGTAAGCAGAAGATGCTACCCCTACCTCTGCCGGGgtaagagtgcggcctttcatatatgcattgcctatatcttaaactatcat Alignment from Spaln_nt2Genome GCTTTGTATGAAGCTGGAGAAAGGAGAAAGGGGACAGACGTGAACGTCTTCACCACAATTCTGACCAGCAGGAG---CTTTCCTCATCTTCGCAGAG gatacaactaacctatcctcacccactagacctgtccctccttactgcagGGTTTGTATGAGGCTGGAGAAAGAAGAAAGGGGACTGATGTGAATGTCTTTACCACGATACTGGTAAGCAGAAGATGCTACCCCTACCTCTGCCGGGgtaagagtgcggcctttcatatatgcattgcctatatcttaaactatcat Alignment from Pairagon GCTTTGTATGAAGCTGGAGAAAGGAGAAAGGGGACAGACGTGAACGTCTTCACCACAATTCTG gatacaactaacctatcctcacccactagacctgtccctccttactgcagGGTTTGTATGAGGCTGGAGAAAGAAGAAAGGGGACTGATGTGAATGTCTTTACCACGATACTGgtaagcagaagatgctacccctacctctgccggggtaagagtgcggcctttcatatatgcattgcctatatcttaaactatcat Alignment from Exonerate_protein2genome GCTTTGTATGAAGCTGGAGAAAGGAGAAAGGGGACAGACGTGAACGTCTTCACCACAATTCTGACCAGC---AGGAGCTTTCCTCATCTTCGCAGAG gatacaactaacctatcctcacccactagacctgtccctccttactgcagGGTTTGTATGAGGCTGGAGAAAGAAGAAAGGGGACTGATGTGAATGTCTTTACCACGATACTGGTAAGCAGAAGATGCTACCCCTACCTCTGCCGGGgtaagagtgcggcctttcatatatgcattgcctatatcttaaactatcat Alignment from Exonerate_coding2genome GCTTTGTATGAAGCTGGAGAAAGGAGAAAGGGGACAGACGTGAACGTCTTCACCACAATTCTGACCAGC---AGGAGCTTTCCTCATCTTCGCAGAG gatacaactaacctatcctcacccactagacctgtccctccttactgcagGGTTTGTATGAGGCTGGAGAAAGAAGAAAGGGGACTGATGTGAATGTCTTTACCACGATACTGGTAAGCAGAAGATGCTACCCCTACCTCTGCCGGGgtaagagtgcggcctttcatatatgcattgcctatatcttaaactatcat Alignment from GeneWise GCTTTGTATGAAGCTGGAGAAAGGAGAAAGGGGACAGACGTGAACGTCTTCACCACAATTCTGACCAGCAGGAGC---TTTCCTCATCTTCGCAGAG gatacaactaacctatcctcacccactagacctgtccctccttactgcagGGTTTGTATGAGGCTGGAGAAAGAAGAAAGGGGACTGATGTGAATGTCTTTACCACGATACTGGTAAGCAGAAGATGCTACCCCTACCTCTGCCGGGgtaagagtgcggcctttcatatatgcattgcctatatcttaaactatcat #### Anxa1_ID4767_3 --> 2 - 0 Original Alignment gtGTGGATGAAGCA------ACCATCATTGACATTCTTACCAAGAGGACCAATGCTCAGCGCCAGCAGATCAAGGCCGCGTACTTACAGGAGAATGGAAAG ttcttctctggttccatccctcatagctgcactgtccatctcccacgcaggtGTAGACAAAGCAACCATATCTATAATTGACATTCTTACCAAAAGAACCATTGCTGAACGGCAGCAGATCAAGGCCGTGGACTTGGAGGAGAATGGGAAGgtgagcaaactaaagacactaaagctcacactgccagcatctcccttcaa Alignment from CESAR gtGTGGATGAAGCAACC------ATCATTGACATTCTTACCAAGAGGACCAATGCTCAGCGCCAGCAGATCAAGGCCGCGTACTTACAGGAGAATGGAAAG ttcttctctggttccatccctcatagctgcactgtccatctcccacgcaggtGTAGACAAAGCAACCATATCTATAATTGACATTCTTACCAAAAGAACCATTGCTGAACGGCAGCAGATCAAGGCCGTGGACTTGGAGGAGAATGGGAAGgtgagcaaactaaagacactaaagctcacactgccagcatctcccttcaa Alignment from Spaln_aa2Genome GTGTGGATGAAGCAACC------ATCATTGACATTCTTACCAAGAGGACCAATGCTCAGCGCCAGCAGATCAAGGCCGCGTACTTACAGGAGAATGGAAAG ttcttctctggttccatccctcatagctgcactgtccatctcccacgcagGTGTAGACAAAGCAACCATATCTATAATTGACATTCTTACCAAAAGAACCATTGCTGAACGGCAGCAGATCAAGGCCGTGGACTTGGAGGAGAATGGGAAGgtgagcaaactaaagacactaaagctcacactgccagcatctcccttcaa Alignment from Spaln_nt2Genome GTGTGGATGAAGCAACCATC------ATTGACATTCTTACCAAGAGGACCAATGCTCAGCGCCAGCAGATCAAGGCCGCGTACTTACAGGAGAATGGAAAG ttcttctctggttccatccctcatagctgcactgtccatctcccacgcagGTGTAGACAAAGCAACCATATCTATAATTGACATTCTTACCAAAAGAACCATTGCTGAACGGCAGCAGATCAAGGCCGTGGACTTGGAGGAGAATGGGAAGgtgagcaaactaaagacactaaagctcacactgccagcatctcccttcaa Alignment from Pairagon GTGTGGATGAAGCAACC------ATCATTGACATTCTTACCAAGAGGACCAATGCTCAGCGCCAGCAGATCAAGGCCGCGTACTTACAGGAGAATGGAAAG ttcttctctggttccatccctcatagctgcactgtccatctcccacgcagGTGTAGACAAAGCAACCATATCTATAATTGACATTCTTACCAAAAGAACCATTGCTGAACGGCAGCAGATCAAGGCCGTGGACTTGGAGGAGAATGGGAAGgtgagcaaactaaagacactaaagctcacactgccagcatctcccttcaa Alignment from Exonerate_protein2genome GTGTGGATGAAGCAACC------ATCATTGACATTCTTACCAAGAGGACCAATGCTCAGCGCCAGCAGATCAAGGCCGCGTACTTACAGGAGAATGGAAAG ttcttctctggttccatccctcatagctgcactgtccatctcccacgcagGTGTAGACAAAGCAACCATATCTATAATTGACATTCTTACCAAAAGAACCATTGCTGAACGGCAGCAGATCAAGGCCGTGGACTTGGAGGAGAATGGGAAGgtgagcaaactaaagacactaaagctcacactgccagcatctcccttcaa Alignment from Exonerate_coding2genome GTGTGGATGAAGCAACC------ATCATTGACATTCTTACCAAGAGGACCAATGCTCAGCGCCAGCAGATCAAGGCCGCGTACTTACAGGAGAATGGAAAG ttcttctctggttccatccctcatagctgcactgtccatctcccacgcagGTGTAGACAAAGCAACCATATCTATAATTGACATTCTTACCAAAAGAACCATTGCTGAACGGCAGCAGATCAAGGCCGTGGACTTGGAGGAGAATGGGAAGgtgagcaaactaaagacactaaagctcacactgccagcatctcccttcaa Alignment from GeneWise GTGTGGATGAAGCAACCATC------ATTGACATTCTTACCAAGAGGACCAATGCTCAGCGCCAGCAGATCAAGGCCGCGTACTTACAGGAGAATGGAAAG ttcttctctggttccatccctcatagctgcactgtccatctcccacgcagGTGTAGACAAAGCAACCATATCTATAATTGACATTCTTACCAAAAGAACCATTGCTGAACGGCAGCAGATCAAGGCCGTGGACTTGGAGGAGAATGGGAAGgtgagcaaactaaagacactaaagctcacactgccagcatctcccttcaa #### Apba1_ID5232_5 --> 0 - 0 Original Alignment ACGGCCCAGAAATTAGCCAAAAGCAGGAAGAAG aaattgtttttggcaaacattgtgctgatgtgtctctcatttctgggtagACCATCCAGCGGTTAGCCCAAAGTAGAAAGAAAgtgaggtgtaacctcaccacttacactcatgaagtcctggacactcgaga Alignment from CESAR ACGGCCCAGAAATTAGCCAAAAGCAGGAAGAAG aaattgtttttggcaaacattgtgctgatgtgtctctcatttctgggtagACCATCCAGCGGTTAGCCCAAAGTAGAAAGAAAgtgaggtgtaacctcaccacttacactcatgaagtcctggacactcgaga Alignment from Spaln_aa2Genome ACGGCCCAGAAATTAGCCAAAAGCAGGAAGAAG aaattgtttttggcaaacattgtgctgatgtgtctctcatttctgggtagACCATCCAGCGGTTAGCCCAAAGTAGAAAGAAAgtgaggtgtaacctcaccacttacactcatgaagtcctggacactcgaga Alignment from Spaln_nt2Genome ACGGCCCAGAAATTAGCCAAAAGCAGGAAGAAG aaattgtttttggcaaacattgtgctgatgtgtctctcatttctgggtagACCATCCAGCGGTTAGCCCAAAGTAGAAAGAAAgtgaggtgtaacctcaccacttacactcatgaagtcctggacactcgaga Alignment from Pairagon ACGGCCCAGAAATTAGCCAAAAGCAGGAAGAAG aaattgtttttggcaaacattgtgctgatgtgtctctcatttctgggtagACCATCCAGCGGTTAGCCCAAAGTAGAAAGAAAgtgaggtgtaacctcaccacttacactcatgaagtcctggacactcgaga Alignment from Exonerate_protein2genome ACGGCCCAGAAATTAGCCAAAAGCAGGAAGAAG aaattgtttttggcaaacattgtgctgatgtgtctctcatttctgggtagACCATCCAGCGGTTAGCCCAAAGTAGAAAGAAAgtgaggtgtaacctcaccacttacactcatgaagtcctggacactcgaga Alignment from Exonerate_coding2genome aaattgtttttggcaaacattgtgctgatgtgtctctcatttctgggtagaccatccagcggttagcccaaagtagaaagaaagtgaggtgtaacctcaccacttacactcatgaagtcctggacactcgaga Alignment from GeneWise aaattgtttttggcaaacattgtgctgatgtgtctctcatttctgggtagaccatccagcggttagcccaaagtagaaagaaagtgaggtgtaacctcaccacttacactcatgaagtcctggacactcgaga #### Apba1_ID5237_7 --> 0 - 0 Original Alignment GAACCTATGATGGACCACCCTCTGAGGACCATTTCCTACATCGCAGACATTGGCAACATCGTCGTGCTGATGGCCCGCAGGCGGATGCCCCGTTCTAACTCCCAGGAAAATGTGGAGGCCTCTCACCCTTCCCAGGATGGAAAAAGACAGTACAAGATGATCTGCCATGTCTTTGAGTCTGAGGAC cattcatgtgtgagttcctgtaacctttagtcaatgttttatttcttcagGAACCTATGATGGATCACCCCCTCAGGACTTTCTCCTACATCACAGATATTGGTAACGTTGTTGTACTTATGGCCCATAGGCAGATGAGCCATTCTAACTCAAAGGAAAATGTC---------CGCCCCTCCCGGGCTGGAAAAAGGCAATACAAAATGATATGCCATGTCTTTGAGTCTGAAGATgtgaggatttgttccagaacatccaatctatggcacatgtttcatcaaga Alignment from CESAR GAACCTATGATGGACCACCCTCTGAGGACCATTTCCTACATCGCAGACATTGGCAACATCGTCGTGCTGATGGCCCGCAGGCGGATGCCCCGTTCTAACTCCCAGGAAAATGTGGAGGCCTCTCACCCTTCCCAGGATGGAAAAAGACAGTACAAGATGATCTGCCATGTCTTTGAGTCTGAGGAC cattcatgtgtgagttcctgtaacctttagtcaatgttttatttcttcagGAACCTATGATGGATCACCCCCTCAGGACTTTCTCCTACATCACAGATATTGGTAACGTTGTTGTACTTATGGCCCATAGGCAGATGAGCCATTCTAACTCAAAGGAAAATGTC---------CGCCCCTCCCGGGCTGGAAAAAGGCAATACAAAATGATATGCCATGTCTTTGAGTCTGAAGATgtgaggatttgttccagaacatccaatctatggcacatgtttcatcaaga Alignment from Spaln_aa2Genome GAACCTATGATGGACCACCCTCTGAGGACCATTTCCTACATCGCAGACATTGGCAACATCGTCGTGCTGATGGCCCGCAGGCGGATGCCCCGTTCTAACTCCCAGGAAAATGTGGAGGCCTCTCACCCTTCCCAGGATGGAAAAAGACAGTACAAGATGATCTGCCATGTCTTTGAGTCTGAGGAC cattcatgtgtgagttcctgtaacctttagtcaatgttttatttcttcagGAACCTATGATGGATCACCCCCTCAGGACTTTCTCCTACATCACAGATATTGGTAACGTTGTTGTACTTATGGCCCATAGGCAGATGAGCCATTCTAACTCAAAGGAAAATGTC---------CGCCCCTCCCGGGCTGGAAAAAGGCAATACAAAATGATATGCCATGTCTTTGAGTCTGAAGATgtgaggatttgttccagaacatccaatctatggcacatgtttcatcaaga Alignment from Spaln_nt2Genome GAACCTATGATGGACCACCCTCTGAGGACCATTTCCTACATCGCAGACATTGGCAACATCGTCGTGCTGATGGCCCGCAGGCGGATGCCCCGTTCTAACTCCCAGGAAAATGTGGAGGCCTCTCACCCTTCCCAGGATGGAAAAAGACAGTACAAGATGATCTGCCATGTCTTTGAGTCTGAGGAC cattcatgtgtgagttcctgtaacctttagtcaatgttttatttcttcagGAACCTATGATGGATCACCCCCTCAGGACTTTCTCCTACATCACAGATATTGGTAACGTTGTTGTACTTATGGCCCATAGGCAGATGAGCCATTCTAACTCAAAGGAAAATGT---------CCGCCCCTCCCGGGCTGGAAAAAGGCAATACAAAATGATATGCCATGTCTTTGAGTCTGAAGATgtgaggatttgttccagaacatccaatctatggcacatgtttcatcaaga Alignment from Pairagon GAACCTATGATGGACCACCCTCTGAGGACCATTTCCTACATCGCAGACATTGGCAACATCGTCGTGCTGATGGCCCGCAGGCGGATGCCCCGTTCTAACTCCCAGGAAAATGTGGAGGCCTCTCACCCTTCCCAGGATGGAAAAAGACAGTACAAGATGATCTGCCATGTCTTTGAGTCTGAGGAC cattcatgtgtgagttcctgtaacctttagtcaatgttttatttcttcagGAACCTATGATGGATCACCCCCTCAGGACTTTCTCCTACATCACAGATATTGGTAACGTTGTTGTACTTATGGCCCATAGGCAGATGAGCCATTCTAACTCAAAGGAAAATGT---------CCGCCCCTCCCGGGCTGGAAAAAGGCAATACAAAATGATATGCCATGTCTTTGAGTCTGAAGATgtgaggatttgttccagaacatccaatctatggcacatgtttcatcaaga Alignment from Exonerate_protein2genome GAACCTATGATGGACCACCCTCTGAGGACCATTTCCTACATCGCAGACATTGGCAACATCGTCGTGCTGATGGCCCGCAGGCGGATGCCCCGTTCTAACTCCCAGGAAAATGTGGAGGCCTCTCACCCTTCCCAGGATGGAAAAAGACAGTACAAGATGATCTGCCATGTCTTTGAGTCTGAGGAC cattcatgtgtgagttcctgtaacctttagtcaatgttttatttcttcagGAACCTATGATGGATCACCCCCTCAGGACTTTCTCCTACATCACAGATATTGGTAACGTTGTTGTACTTATGGCCCATAGGCAGATGAGCCATTCTAACTCAAAGGAAAATGTC---------CGCCCCTCCCGGGCTGGAAAAAGGCAATACAAAATGATATGCCATGTCTTTGAGTCTGAAGATgtgaggatttgttccagaacatccaatctatggcacatgtttcatcaaga Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAACCTATGATGGACCACCCTCTGAGGACCATTTCCTACATCGCAGACATTGGCAACATCGTCGTGCTGATGGCCCGCAGGCGGATGCCCCGTTCTAACTCCCAGGAAAATGTGGAGGCCTCTCACCCTTCCCAGGATGGAAAAAGACAGTACAAGATGATCTGCCATGTCTTTGAGTCTGAGGAC cattcatgtgtgagttcctgtaacctttagtcaatgttttatttcttcagGAACCTATGATGGATCACCCCCTCAGGACTTTCTCCTACATCACAGATATTGGTAACGTTGTTGTACTTATGGCCCATAGGCAGATGAGCCATTCTAACTCAAAGGAAAATGTCCGC---------CCCTCCCGGGCTGGAAAAAGGCAATACAAAATGATATGCCATGTCTTTGAGTCTGAAGATgtgaggatttgttccagaacatccaatctatggcacatgtttcatcaaga #### Apba1_ID5238_8 --> 0 - 0 Original Alignment GCCCAGCTGATCGCGCAGTCCATAGGACAGGCATTCAGTGTTGCGTACCAGGAATTCCTCAGGGCCAATGGCATCAACCCAGAAGACCTCAGCCAGAAGGAATACAGTGACCTGCTCAACACCCAGGACATGTACAACGATGACCTGATCCACTTCTCCAAGTCGGAAAACTGCAAAGAT cttgatatatgggaatcatccagactagctctgttctcttcttccatcagGCCTTGTTAATTGCACAATCCATAGGACAGGCATTCAGTGTTGCATACCAGGAATATCTCAGGGCCAATGGTATTAACCCAGAAGACCTTAGCCAGATAGAAGCGAGTGACCTGCTCAACACAAGAGATATATATAATGATGGTTTCCTACAATCTTCCAAACCAGAGAATTGCAAAGATgtacttgttgtttcacaggtgcaggcagctgagctagacatctaacctac Alignment from CESAR GCCCAGCTGATCGCGCAGTCCATAGGACAGGCATTCAGTGTTGCGTACCAGGAATTCCTCAGGGCCAATGGCATCAACCCAGAAGACCTCAGCCAGAAGGAATACAGTGACCTGCTCAACACCCAGGACATGTACAACGATGACCTGATCCACTTCTCCAAGTCGGAAAACTGCAAAGAT cttgatatatgggaatcatccagactagctctgttctcttcttccatcagGCCTTGTTAATTGCACAATCCATAGGACAGGCATTCAGTGTTGCATACCAGGAATATCTCAGGGCCAATGGTATTAACCCAGAAGACCTTAGCCAGATAGAAGCGAGTGACCTGCTCAACACAAGAGATATATATAATGATGGTTTCCTACAATCTTCCAAACCAGAGAATTGCAAAGATgtacttgttgtttcacaggtgcaggcagctgagctagacatctaacctac Alignment from Spaln_aa2Genome GCCCAGCTGATCGCGCAGTCCATAGGACAGGCATTCAGTGTTGCGTACCAGGAATTCCTCAGGGCCAATGGCATCAACCCAGAAGACCTCAGCCAGAAGGAATACAGTGACCTGCTCAACACCCAGGACATGTACAACGATGACCTGATCCACTTCTCCAAGTCGGAAAACTGCAAAGAT cttgatatatgggaatcatccagactagctctgttctcttcttccatcagGCCTTGTTAATTGCACAATCCATAGGACAGGCATTCAGTGTTGCATACCAGGAATATCTCAGGGCCAATGGTATTAACCCAGAAGACCTTAGCCAGATAGAAGCGAGTGACCTGCTCAACACAAGAGATATATATAATGATGGTTTCCTACAATCTTCCAAACCAGAGAATTGCAAAGATgtacttgttgtttcacaggtgcaggcagctgagctagacatctaacctac Alignment from Spaln_nt2Genome GCCCAGCTGATCGCGCAGTCCATAGGACAGGCATTCAGTGTTGCGTACCAGGAATTCCTCAGGGCCAATGGCATCAACCCAGAAGACCTCAGCCAGAAGGAATACAGTGACCTGCTCAACACCCAGGACATGTACAACGATGACCTGATCCACTTCTCCAAGTCGGAAAACTGCAAAGAT cttgatatatgggaatcatccagactagctctgttctcttcttccatcagGCCTTGTTAATTGCACAATCCATAGGACAGGCATTCAGTGTTGCATACCAGGAATATCTCAGGGCCAATGGTATTAACCCAGAAGACCTTAGCCAGATAGAAGCGAGTGACCTGCTCAACACAAGAGATATATATAATGATGGTTTCCTACAATCTTCCAAACCAGAGAATTGCAAAGATgtacttgttgtttcacaggtgcaggcagctgagctagacatctaacctac Alignment from Pairagon GCCCAGCTGATCGCGCAGTCCATAGGACAGGCATTCAGTGTTGCGTACCAGGAATTCCTCAGGGCCAATGGCATCAACCCAGAAGACCTCAGCCAGAAGGAATACAGTGACCTGCTCAACAC----------------------------------------CCAGGACATGTACAACGATGACCTGATCCACTTCTCCAAGTCGGAAAACTGCAAAGAT cttgatatatgggaatcatccagactagctctgttctcttcttccatcagGCCTTGTTAATTGCACAATCCATAGGACAGGCATTCAGTGTTGCATACCAGGAATATCTCAGGGCCAATGGTATTAACCCAGAAGACCTTAGCCAGATAGAAGCGAGTGACCTGCTCAACACAAGAGATATATATAATGATGGTTTCCTACAATCTTCCAAACCA----------------------------------------GAGAATTGCAAAGATgtacttgttgtttcacaggtgcaggcagctgagctagacatctaacctac Alignment from Exonerate_protein2genome GCCCAGCTGATCGCGCAGTCCATAGGACAGGCATTCAGTGTTGCGTACCAGGAATTCCTCAGGGCCAATGGCATCAACCCAGAAGACCTCAGCCAGAAGGAATACAGTGACCTGCTCAACACCCAGGACATGTACAACGATGACCTGATCCACTTCTCCAAGTCGGAAAACTGCAAAGAT cttgatatatgggaatcatccagactagctctgttctcttcttccatcagGCCTTGTTAATTGCACAATCCATAGGACAGGCATTCAGTGTTGCATACCAGGAATATCTCAGGGCCAATGGTATTAACCCAGAAGACCTTAGCCAGATAGAAGCGAGTGACCTGCTCAACACAAGAGATATATATAATGATGGTTTCCTACAATCTTCCAAACCAGAGAATTGCAAAGATgtacttgttgtttcacaggtgcaggcagctgagctagacatctaacctac Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCCCAGCTGATCGCGCAGTCCATAGGACAGGCATTCAGTGTTGCGTACCAGGAATTCCTCAGGGCCAATGGCATCAACCCAGAAGACCTCAGCCAGAAGGAATACAGTGACCTGCTCAACACCCAGGACATGTACAACGATGACCTGATCCACTTCTCCAAGTCGGAAAACTGCAAAGAT cttgatatatgggaatcatccagactagctctgttctcttcttccatcagGCCTTGTTAATTGCACAATCCATAGGACAGGCATTCAGTGTTGCATACCAGGAATATCTCAGGGCCAATGGTATTAACCCAGAAGACCTTAGCCAGATAGAAGCGAGTGACCTGCTCAACACAAGAGATATATATAATGATGGTTTCCTACAATCTTCCAAACCAGAGAATTGCAAAGATgtacttgttgtttcacaggtgcaggcagctgagctagacatctaacctac #### Apba1_ID5241_10 --> 0 - 0 Original Alignment GGCTTAAAGAACCAGTCCCGAGTGAAGCTGAATATCGTGAGGTGCCCCCCAGTGACCACAGTGCTAATAAGGAGGCCGGACCTTCGCTACCAGCTGGGTTTCAGCGTACAGAATGGAATT tgatttttgatctgttgatgatggttatactttgatattgtgtattttagGGTTTAAAGAACCAGTCCCGTGTGAAGCTGAACATTGTGAGATGCCCCCTGGTTACCACAGTGTTGATAAGGCAGCCCGACCTTCGTTATCAGCTAGGTTTTAGCATACAGAATGGAATTgtaagtcaccaagaatttgtattgttttatttaaaacagcaaagacagca Alignment from CESAR GGCTTAAAGAACCAGTCCCGAGTGAAGCTGAATATCGTGAGGTGCCCCCCAGTGACCACAGTGCTAATAAGGAGGCCGGACCTTCGCTACCAGCTGGGTTTCAGCGTACAGAATGGAATT tgatttttgatctgttgatgatggttatactttgatattgtgtattttagGGTTTAAAGAACCAGTCCCGTGTGAAGCTGAACATTGTGAGATGCCCCCTGGTTACCACAGTGTTGATAAGGCAGCCCGACCTTCGTTATCAGCTAGGTTTTAGCATACAGAATGGAATTgtaagtcaccaagaatttgtattgttttatttaaaacagcaaagacagca Alignment from Spaln_aa2Genome GGCTTAAAGAACCAGTCCCGAGTGAAGCTGAATATCGTGAGGTGCCCCCCAGTGACCACAGTGCTAATAAGGAGGCCGGACCTTCGCTACCAGCTGGGTTTCAGCGTACAGAATGGAATT tgatttttgatctgttgatgatggttatactttgatattgtgtattttagGGTTTAAAGAACCAGTCCCGTGTGAAGCTGAACATTGTGAGATGCCCCCTGGTTACCACAGTGTTGATAAGGCAGCCCGACCTTCGTTATCAGCTAGGTTTTAGCATACAGAATGGAATTgtaagtcaccaagaatttgtattgttttatttaaaacagcaaagacagca Alignment from Spaln_nt2Genome GGCTTAAAGAACCAGTCCCGAGTGAAGCTGAATATCGTGAGGTGCCCCCCAGTGACCACAGTGCTAATAAGGAGGCCGGACCTTCGCTACCAGCTGGGTTTCAGCGTACAGAATGGAATT tgatttttgatctgttgatgatggttatactttgatattgtgtattttagGGTTTAAAGAACCAGTCCCGTGTGAAGCTGAACATTGTGAGATGCCCCCTGGTTACCACAGTGTTGATAAGGCAGCCCGACCTTCGTTATCAGCTAGGTTTTAGCATACAGAATGGAATTgtaagtcaccaagaatttgtattgttttatttaaaacagcaaagacagca Alignment from Pairagon GGCTTAAAGAACCAGTCCCGAGTGAAGCTGAATATCGTGAGGTGCCCCCCAGTGACCACAGTGCTAATAAGGAGGCCGGACCTTCGCTACCAGCTGGGTTTCAGCGTACAGAATGGAATT tgatttttgatctgttgatgatggttatactttgatattgtgtattttagGGTTTAAAGAACCAGTCCCGTGTGAAGCTGAACATTGTGAGATGCCCCCTGGTTACCACAGTGTTGATAAGGCAGCCCGACCTTCGTTATCAGCTAGGTTTTAGCATACAGAATGGAATTgtaagtcaccaagaatttgtattgttttatttaaaacagcaaagacagca Alignment from Exonerate_protein2genome GGCTTAAAGAACCAGTCCCGAGTGAAGCTGAATATCGTGAGGTGCCCCCCAGTGACCACAGTGCTAATAAGGAGGCCGGACCTTCGCTACCAGCTGGGTTTCAGCGTACAGAATGGAATT tgatttttgatctgttgatgatggttatactttgatattgtgtattttagGGTTTAAAGAACCAGTCCCGTGTGAAGCTGAACATTGTGAGATGCCCCCTGGTTACCACAGTGTTGATAAGGCAGCCCGACCTTCGTTATCAGCTAGGTTTTAGCATACAGAATGGAATTgtaagtcaccaagaatttgtattgttttatttaaaacagcaaagacagca Alignment from Exonerate_coding2genome tgatttttgatctgttgatgatggttatactttgatattgtgtattttagggtttaaagaaccagtcccgtgtgaagctgaacattgtgagatgccccctggttaccacagtgttgataaggcagcccgaccttcgttatcagctaggttttagcatacagaatggaattgtaagtcaccaagaatttgtattgttttatttaaaacagcaaagacagca Alignment from GeneWise GGCTTAAAGAACCAGTCCCGAGTGAAGCTGAATATCGTGAGGTGCCCCCCAGTGACCACAGTGCTAATAAGGAGGCCGGACCTTCGCTACCAGCTGGGTTTCAGCGTACAGAATGGAATT tgatttttgatctgttgatgatggttatactttgatattgtgtattttagGGTTTAAAGAACCAGTCCCGTGTGAAGCTGAACATTGTGAGATGCCCCCTGGTTACCACAGTGTTGATAAGGCAGCCCGACCTTCGTTATCAGCTAGGTTTTAGCATACAGAATGGAATTgtaagtcaccaagaatttgtattgttttatttaaaacagcaaagacagca #### Arhgap19_ID8262_11 --> 0 - 1 Original Alignment TTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAAg caaagcaaccacataccatgggggattatattcttgttttcctcccttagTCCTTCTCTGGCTCTCCAGCTGGAACAGTGACATCAACAAGACTGAAATGGTCTGAGGCAAAGAGAGAGGGGCGAAAAggtaatggaatccctactactcactactcccttgatttctgtgtttttttg Alignment from CESAR TTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAAg caaagcaaccacataccatgggggattatattcttgttttcctcccttagTCCTTCTCTGGCTCTCCAGCTGGAACAGTGACATCAACAAGACTGAAATGGTCTGAGGCAAAGAGAGAGGGGCGAAAAggtaatggaatccctactactcactactcccttgatttctgtgtttttttg Alignment from Spaln_aa2Genome TTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAAG caaagcaaccacataccatgggggattatattcttgttttcctcccttagTCCTTCTCTGGCTCTCCAGCTGGAACAGTGACATCAACAAGACTGAAATGGTCTGAGGCAAAGAGAGAGGGGCGAAAAGgtaatggaatccctactactcactactcccttgatttctgtgtttttttg Alignment from Spaln_nt2Genome TTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAAG caaagcaaccacataccatgggggattatattcttgttttcctcccttagTCCTTCTCTGGCTCTCCAGCTGGAACAGTGACATCAACAAGACTGAAATGGTCTGAGGCAAAGAGAGAGGGGCGAAAAGgtaatggaatccctactactcactactcccttgatttctgtgtttttttg Alignment from Pairagon TTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAAG caaagcaaccacataccatgggggattatattcttgttttcctcccttagTCCTTCTCTGGCTCTCCAGCTGGAACAGTGACATCAACAAGACTGAAATGGTCTGAGGCAAAGAGAGAGGGGCGAAAAGgtaatggaatccctactactcactactcccttgatttctgtgtttttttg Alignment from Exonerate_protein2genome TTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAAGGA caaagcaaccacataccatgggggattatattcttgttttcctcccttagTCCTTCTCTGGCTCTCCAGCTGGAACAGTGACATCAACAAGACTGAAATGGTCTGAGGCAAAGAGAGAGGGGCGAAAAGGTaatggaatccctactactcactactcccttgatttctgtgtttttttg Alignment from Exonerate_coding2genome TTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAAGGA caaagcaaccacataccatgggggattatattcttgttttcctcccttagTCCTTCTCTGGCTCTCCAGCTGGAACAGTGACATCAACAAGACTGAAATGGTCTGAGGCAAAGAGAGAGGGGCGAAAAGGTaatggaatccctactactcactactcccttgatttctgtgtttttttg Alignment from GeneWise TTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAAGGATTCTTT caaagcaaccacataccatgggggattatattcttgttttcctcccttagTCCTTCTCTGGCTCTCCAGCTGGAACAGTGACATCAACAAGACTGAAATGGTCTGAGGCAAAGAGAGAGGGGCGAAAAGGTAATGGAatccctactactcactactcccttgatttctgtgtttttttg #### Arhgap19_ID8265_8 --> 0 - 0 Original Alignment GATGACCTTGATCTGACAACCTCATGTCATAACATGTCCTTCCAGCTGGCAAGATGTCAGAGACAGAACAGGGTAGATCCTTCCTCTCAGCAGGAGGAGACCCAGCAGCACACAGAAGAGGCGCTGAGAGAACTCTTCCAGCATGTTCATAACTGGCCAGACTCCGCGAAGAAGAAACAACTTCTCAGACAG ctggattacatctaacaatttgtgaaatctttttatttatttaattaaagGATGATCTTGACTCAACAACCTCATGCCATAATATGTCTTTCCAACTTGCAAGATGTCAGAGGCAAAAGAGGGTAGATCCCTCCTCTCAGCAAGAGGACACCCAGCAGCACACTGAGAAGGGGCTGAGAGATCTCTTCCAGCATGTTCACAACTGGCCTGACTCTGCA---AAGAAACAACTCCTCAGACAAgtaagaaggttattgaaaatatattgtggcctgtcactttggtggaaccc Alignment from CESAR GATGACCTTGATCTGACAACCTCATGTCATAACATGTCCTTCCAGCTGGCAAGATGTCAGAGACAGAACAGGGTAGATCCTTCCTCTCAGCAGGAGGAGACCCAGCAGCACACAGAAGAGGCGCTGAGAGAACTCTTCCAGCATGTTCATAACTGGCCAGACTCCGCGAAGAAGAAACAACTTCTCAGACAG ctggattacatctaacaatttgtgaaatctttttatttatttaattaaagGATGATCTTGACTCAACAACCTCATGCCATAATATGTCTTTCCAACTTGCAAGATGTCAGAGGCAAAAGAGGGTAGATCCCTCCTCTCAGCAAGAGGACACCCAGCAGCACACTGAGAAGGGGCTGAGAGATCTCTTCCAGCATGTTCACAACTGGCCTGACTCTGCAAAG---AAACAACTCCTCAGACAAgtaagaaggttattgaaaatatattgtggcctgtcactttggtggaaccc Alignment from Spaln_aa2Genome GATGACCTTGATCTGACAACCTCATGTCATAACATGTCCTTCCAGCTGGCAAGATGTCAGAGACAGAACAGGGTAGATCCTTCCTCTCAGCAGGAGGAGACCCAGCAGCACACAGAAGAGGCGCTGAGAGAACTCTTCCAGCATGTTCATAACTGGCCAGACTCCGCGAAGAAGAAACAACTTCTCAGACAG ctggattacatctaacaatttgtgaaatctttttatttatttaattaaagGATGATCTTGACTCAACAACCTCATGCCATAATATGTCTTTCCAACTTGCAAGATGTCAGAGGCAAAAGAGGGTAGATCCCTCCTCTCAGCAAGAGGACACCCAGCAGCACACTGAGAAGGGGCTGAGAGATCTCTTCCAGCATGTTCACAACTGGCCTGACTCTGCA---AAGAAACAACTCCTCAGACAAgtaagaaggttattgaaaatatattgtggcctgtcactttggtggaaccc Alignment from Spaln_nt2Genome GATGACCTTGATCTGACAACCTCATGTCATAACATGTCCTTCCAGCTGGCAAGATGTCAGAGACAGAACAGGGTAGATCCTTCCTCTCAGCAGGAGGAGACCCAGCAGCACACAGAAGAGGCGCTGAGAGAACTCTTCCAGCATGTTCATAACTGGCCAGACTCCGCGAAGAAGAAACAACTTCTCAGACAG ctggattacatctaacaatttgtgaaatctttttatttatttaattaaagGATGATCTTGACTCAACAACCTCATGCCATAATATGTCTTTCCAACTTGCAAGATGTCAGAGGCAAAAGAGGGTAGATCCCTCCTCTCAGCAAGAGGACACCCAGCAGCACACTGAGAAGGGGCTGAGAGATCTCTTCCAGCATGTTCACAACTGGCCTGACTCTGC---AAAGAAACAACTCCTCAGACAAgtaagaaggttattgaaaatatattgtggcctgtcactttggtggaaccc Alignment from Pairagon GATGACCTTGATCTGACAACCTCATGTCATAACATGTCCTTCCAGCTGGCAAGATGTCAGAGACAGAACAGGGTAGATCCTTCCTCTCAGCAGGAGGAGACCCAGCAGCACACAGAAGAGGCGCTGAGAGAACTCTTCCAGCATGTTCATAACTGGCCAGACTCCGCGAAGAAGAAACAACTTCTCAGACAG ctggattacatctaacaatttgtgaaatctttttatttatttaattaaagGATGATCTTGACTCAACAACCTCATGCCATAATATGTCTTTCCAACTTGCAAGATGTCAGAGGCAAAAGAGGGTAGATCCCTCCTCTCAGCAAGAGGACACCCAGCAGCACACTGAGAAGGGGCTGAGAGATCTCTTCCAGCATGTTCACAACTGGCCTGACTCTGC---AAAGAAACAACTCCTCAGACAAgtaagaaggttattgaaaatatattgtggcctgtcactttggtggaaccc Alignment from Exonerate_protein2genome GATGACCTTGATCTGACAACCTCATGTCATAACATGTCCTTCCAGCTGGCAAGATGTCAGAGACAGAACAGGGTAGATCCTTCCTCTCAGCAGGAGGAGACCCAGCAGCACACAGAAGAGGCGCTGAGAGAACTCTTCCAGCATGTTCATAACTGGCCAGACTCCGCGAAGAAGAAACAACTTCTCAGACAG ctggattacatctaacaatttgtgaaatctttttatttatttaattaaagGATGATCTTGACTCAACAACCTCATGCCATAATATGTCTTTCCAACTTGCAAGATGTCAGAGGCAAAAGAGGGTAGATCCCTCCTCTCAGCAAGAGGACACCCAGCAGCACACTGAGAAGGGGCTGAGAGATCTCTTCCAGCATGTTCACAACTGGCCTGACTCTGCA---AAGAAACAACTCCTCAGACAAgtaagaaggttattgaaaatatattgtggcctgtcactttggtggaaccc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GATGACCTTGATCTGACAACCTCATGTCATAACATGTCCTTCCAGCTGGCAAGATGTCAGAGACAGAACAGGGTAGATCCTTCCTCTCAGCAGGAGGAGACCCAGCAGCACACAGAAGAGGCGCTGAGAGAACTCTTCCAGCATGTTCATAACTGGCCAGACTCCGCGAAGAAGAAACAACTTCTCAGACAG ctggattacatctaacaatttgtgaaatctttttatttatttaattaaagGATGATCTTGACTCAACAACCTCATGCCATAATATGTCTTTCCAACTTGCAAGATGTCAGAGGCAAAAGAGGGTAGATCCCTCCTCTCAGCAAGAGGACACCCAGCAGCACACTGAGAAGGGGCTGAGAGATCTCTTCCAGCATGTTCACAACTGGCCTGACTCTGCAAAG---AAACAACTCCTCAGACAAgtaagaaggttattgaaaatatattgtggcctgtcactttggtggaaccc #### Arl2_ID1475_4 --> 0 - 0 Original Alignment CGCCTGGCTGGAGCAACCCTCCTCATCTTTGCCAACAAGCAGGACCTGCCTGGAGCACTGTCCTGTAATGCTATTCAGGAG tatctgtaggtagatgtggatagatcatgctgttctttcttattggtcagCGCTTGGCTGGGGCAACTCTGCTGATCTTTGCCAACAAGCAAGACCTTCCTGGAGCGCTGTCATGTAATGCTATTCAGGAGgtgagttaccaggggttagtgtattgggtagtgacacaatatgtatattc Alignment from CESAR CGCCTGGCTGGAGCAACCCTCCTCATCTTTGCCAACAAGCAGGACCTGCCTGGAGCACTGTCCTGTAATGCTATTCAGGAG tatctgtaggtagatgtggatagatcatgctgttctttcttattggtcagCGCTTGGCTGGGGCAACTCTGCTGATCTTTGCCAACAAGCAAGACCTTCCTGGAGCGCTGTCATGTAATGCTATTCAGGAGgtgagttaccaggggttagtgtattgggtagtgacacaatatgtatattc Alignment from Spaln_aa2Genome CGCCTGGCTGGAGCAACCCTCCTCATCTTTGCCAACAAGCAGGACCTGCCTGGAGCACTGTCCTGTAATGCTATTCAGGAG tatctgtaggtagatgtggatagatcatgctgttctttcttattggtcagCGCTTGGCTGGGGCAACTCTGCTGATCTTTGCCAACAAGCAAGACCTTCCTGGAGCGCTGTCATGTAATGCTATTCAGGAGgtgagttaccaggggttagtgtattgggtagtgacacaatatgtatattc Alignment from Spaln_nt2Genome CGCCTGGCTGGAGCAACCCTCCTCATCTTTGCCAACAAGCAGGACCTGCCTGGAGCACTGTCCTGTAATGCTATTCAGGAG tatctgtaggtagatgtggatagatcatgctgttctttcttattggtcagCGCTTGGCTGGGGCAACTCTGCTGATCTTTGCCAACAAGCAAGACCTTCCTGGAGCGCTGTCATGTAATGCTATTCAGGAGgtgagttaccaggggttagtgtattgggtagtgacacaatatgtatattc Alignment from Pairagon CGCCTGGCTGGAGCAACCCTCCTCATCTTTGCCAACAAGCAGGACCTGCCTGGAGCACTGTCCTGTAATGCTATTCAGGAG tatctgtaggtagatgtggatagatcatgctgttctttcttattggtcagCGCTTGGCTGGGGCAACTCTGCTGATCTTTGCCAACAAGCAAGACCTTCCTGGAGCGCTGTCATGTAATGCTATTCAGGAGgtgagttaccaggggttagtgtattgggtagtgacacaatatgtatattc Alignment from Exonerate_protein2genome CGCCTGGCTGGAGCAACCCTCCTCATCTTTGCCAACAAGCAGGACCTGCCTGGAGCACTGTCCTGTAATGCTATTCAGGAG tatctgtaggtagatgtggatagatcatgctgttctttcttattggtcagCGCTTGGCTGGGGCAACTCTGCTGATCTTTGCCAACAAGCAAGACCTTCCTGGAGCGCTGTCATGTAATGCTATTCAGGAGgtgagttaccaggggttagtgtattgggtagtgacacaatatgtatattc Alignment from Exonerate_coding2genome CGCCTGGCTGGAGCAACCCTCCTCATCTTTGCCAACAAGCAGGACCTGCCTGGAGCACTGTCCTGTAATGCTATTCAGGAG tatctgtaggtagatgtggatagatcatgctgttctttcttattggtcagCGCTTGGCTGGGGCAACTCTGCTGATCTTTGCCAACAAGCAAGACCTTCCTGGAGCGCTGTCATGTAATGCTATTCAGGAGgtgagttaccaggggttagtgtattgggtagtgacacaatatgtatattc Alignment from GeneWise CGCCTGGCTGGAGCAACCCTCCTCATCTTTGCCAACAAGCAGGACCTGCCTGGAGCACTGTCCTGTAATGCTATTCAGGAG tatctgtaggtagatgtggatagatcatgctgttctttcttattggtcagCGCTTGGCTGGGGCAACTCTGCTGATCTTTGCCAACAAGCAAGACCTTCCTGGAGCGCTGTCATGTAATGCTATTCAGGAGgtgagttaccaggggttagtgtattgggtagtgacacaatatgtatattc #### Arl3_ID9952_4 --> 0 - 0 Original Alignment ATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAG ccttctatcattgtttccagtgtttatattgatgctcttgtttattttagATCTATGTCATTGACAGTGCTGACAGAAAGAGATTTGAGCAGACAGGCCAGgtaagagaatttttgtgtagatgttgctgacctaaccatagcatcagtta Alignment from CESAR ATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAG ccttctatcattgtttccagtgtttatattgatgctcttgtttattttagATCTATGTCATTGACAGTGCTGACAGAAAGAGATTTGAGCAGACAGGCCAGgtaagagaatttttgtgtagatgttgctgacctaaccatagcatcagtta Alignment from Spaln_aa2Genome ATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAG ccttctatcattgtttccagtgtttatattgatgctcttgtttattttagATCTATGTCATTGACAGTGCTGACAGAAAGAGATTTGAGCAGACAGGCCAGgtaagagaatttttgtgtagatgttgctgacctaaccatagcatcagtta Alignment from Spaln_nt2Genome ATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAG ccttctatcattgtttccagtgtttatattgatgctcttgtttattttagATCTATGTCATTGACAGTGCTGACAGAAAGAGATTTGAGCAGACAGGCCAGgtaagagaatttttgtgtagatgttgctgacctaaccatagcatcagtta Alignment from Pairagon ATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAG ccttctatcattgtttccagtgtttatattgatgctcttgtttattttagATCTATGTCATTGACAGTGCTGACAGAAAGAGATTTGAGCAGACAGGCCAGgtaagagaatttttgtgtagatgttgctgacctaaccatagcatcagtta Alignment from Exonerate_protein2genome ATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAG ccttctatcattgtttccagtgtttatattgatgctcttgtttattttagATCTATGTCATTGACAGTGCTGACAGAAAGAGATTTGAGCAGACAGGCCAGgtaagagaatttttgtgtagatgttgctgacctaaccatagcatcagtta Alignment from Exonerate_coding2genome ATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAG ccttctatcattgtttccagtgtttatattgatgctcttgtttattttagATCTATGTCATTGACAGTGCTGACAGAAAGAGATTTGAGCAGACAGGCCAGgtaagagaatttttgtgtagatgttgctgacctaaccatagcatcagtta Alignment from GeneWise ATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAG ccttctatcattgtttccagtgtttatattgatgctcttgtttattttagATCTATGTCATTGACAGTGCTGACAGAAAGAGATTTGAGCAGACAGGCCAGgtaagagaatttttgtgtagatgttgctgacctaaccatagcatcagtta #### Asah2_ID6656_18 --> 0 - 0 Original Alignment GGAGAAGTGGTTGAAGTTATATTTGTAGGCGCTAACCCAAAGAATTCAGCAGAGAACCAG gttttgacttgacccaagggatccaattcatgaattcttactccctgtagGGAGAAGTGGTCGAAGTGATTTTTGTGGGTGTAAACCCCAAAAATTCATCAGAAAACCAGgtatgtattagggtctagcaactacctactcttgaactaaaaataaagat Alignment from CESAR GGAGAAGTGGTTGAAGTTATATTTGTAGGCGCTAACCCAAAGAATTCAGCAGAGAACCAG gttttgacttgacccaagggatccaattcatgaattcttactccctgtagGGAGAAGTGGTCGAAGTGATTTTTGTGGGTGTAAACCCCAAAAATTCATCAGAAAACCAGgtatgtattagggtctagcaactacctactcttgaactaaaaataaagat Alignment from Spaln_aa2Genome GGAGAAGTGGTTGAAGTTATATTTGTAGGCGCTAACCCAAAGAATTCAGCAGAGAACCAG gttttgacttgacccaagggatccaattcatgaattcttactccctgtagGGAGAAGTGGTCGAAGTGATTTTTGTGGGTGTAAACCCCAAAAATTCATCAGAAAACCAGgtatgtattagggtctagcaactacctactcttgaactaaaaataaagat Alignment from Spaln_nt2Genome GGAGAAGTGGTTGAAGTTATATTTGTAGGCGCTAACCCAAAGAATTCAGCAGAGAACCAG gttttgacttgacccaagggatccaattcatgaattcttactccctgtagGGAGAAGTGGTCGAAGTGATTTTTGTGGGTGTAAACCCCAAAAATTCATCAGAAAACCAGgtatgtattagggtctagcaactacctactcttgaactaaaaataaagat Alignment from Pairagon GGAGAAGTGGTTGAAGTTATATTTGTAGGCGCTAACCCAAAGAATTCAGCAGAGAACCAG gttttgacttgacccaagggatccaattcatgaattcttactccctgtagGGAGAAGTGGTCGAAGTGATTTTTGTGGGTGTAAACCCCAAAAATTCATCAGAAAACCAGgtatgtattagggtctagcaactacctactcttgaactaaaaataaagat Alignment from Exonerate_protein2genome GGAGAAGTGGTTGAAGTTATATTTGTAGGCGCTAACCCAAAGAATTCAGCAGAGAACCAG gttttgacttgacccaagggatccaattcatgaattcttactccctgtagGGAGAAGTGGTCGAAGTGATTTTTGTGGGTGTAAACCCCAAAAATTCATCAGAAAACCAGgtatgtattagggtctagcaactacctactcttgaactaaaaataaagat Alignment from Exonerate_coding2genome gttttgacttgacccaagggatccaattcatgaattcttactccctgtagggagaagtggtcgaagtgatttttgtgggtgtaaaccccaaaaattcatcagaaaaccaggtatgtattagggtctagcaactacctactcttgaactaaaaataaagat Alignment from GeneWise GGAGAAGTGGTTGAAGTTATATTTGTAGGCGCTAACCCAAAGAATTCAGCAGAGAACCAG gttttgacttgacccaagggatccaattcatgaattcttactccctgtagGGAGAAGTGGTCGAAGTGATTTTTGTGGGTGTAAACCCCAAAAATTCATCAGAAAACCAGgtatgtattagggtctagcaactacctactcttgaactaaaaataaagat #### Asah2_ID6660_14 --> 1 - 0 Original Alignment aACCATGTCGGGACGAAGATTTCGTGAGGCAATTAAAAAA acggctatctccagggttgacagtccactcaccaccctcctacctcttagaACTATGTCTGGGCAAAAATTTCGTGCGGCAATCCAAAATgtgagtaataataatatatatgggtcgcaatggtcctcacaatgaaccca Alignment from CESAR aACCATGTCGGGACGAAGATTTCGTGAGGCAATTAAAAAA acggctatctccagggttgacagtccactcaccaccctcctacctcttagaACTATGTCTGGGCAAAAATTTCGTGCGGCAATCCAAAATgtgagtaataataatatatatgggtcgcaatggtcctcacaatgaaccca Alignment from Spaln_aa2Genome AACCATGTCGGGACGAAGATTTCGTGAGGCAATTAAAAAA acggctatctccagggttgacagtccactcaccaccctcctacctcttagAACTATGTCTGGGCAAAAATTTCGTGCGGCAATCCAAAATgtgagtaataataatatatatgggtcgcaatggtcctcacaatgaaccca Alignment from Spaln_nt2Genome AACCATGTCGGGACGAAGATTTCGTGAGGCAATTAAAAAA acggctatctccagggttgacagtccactcaccaccctcctacctcttagAACTATGTCTGGGCAAAAATTTCGTGCGGCAATCCAAAATgtgagtaataataatatatatgggtcgcaatggtcctcacaatgaaccca Alignment from Pairagon AACCATGTCGGGACGAAGATTTCGTGAGGCAATTAAAAAA acggctatctccagggttgacagtccactcaccaccctcctacctcttagAACTATGTCTGGGCAAAAATTTCGTGCGGCAATCCAAAATgtgagtaataataatatatatgggtcgcaatggtcctcacaatgaaccca Alignment from Exonerate_protein2genome acggctatctccagggttgacagtccactcaccaccctcctacctcttagaactatgtctgggcaaaaatttcgtgcggcaatccaaaatgtgagtaataataatatatatgggtcgcaatggtcctcacaatgaaccca Alignment from Exonerate_coding2genome acggctatctccagggttgacagtccactcaccaccctcctacctcttagaactatgtctgggcaaaaatttcgtgcggcaatccaaaatgtgagtaataataatatatatgggtcgcaatggtcctcacaatgaaccca Alignment from GeneWise AACCATGTCGGGACGAAGATTTCGTGAGGCAATTAAAAAA acggctatctccagggttgacagtccactcaccaccctcctacctcttagAACTATGTCTGGGCAAAAATTTCGTGCGGCAATCCAAAATgtgagtaataataatatatatgggtcgcaatggtcctcacaatgaaccca #### Asah2_ID6663_11 --> 0 - 1 Original Alignment GTGAAGACGTGTAAACCTGCCCTGGGCTACAGTTTTGCCGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGg ttcttcatatgtcttgaaacacagaatacgtccccaactcttcctttcagGTGAAGACTTGTAAACCTGCCCTGGGCTACAGCTTTGTTGCAGGCACAACTGATGGAGTTTCAGGTCTTAATATCACTCAGggtaccggtgcctgaacctccacagcccaaaatcttgggttgttgcatctt Alignment from CESAR GTGAAGACGTGTAAACCTGCCCTGGGCTACAGTTTTGCCGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGg ttcttcatatgtcttgaaacacagaatacgtccccaactcttcctttcagGTGAAGACTTGTAAACCTGCCCTGGGCTACAGCTTTGTTGCAGGCACAACTGATGGAGTTTCAGGTCTTAATATCACTCAGggtaccggtgcctgaacctccacagcccaaaatcttgggttgttgcatctt Alignment from Spaln_aa2Genome GTGAAGACGTGTAAACCTGCCCTGGGCTACAGTTTTGCCGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGG ttcttcatatgtcttgaaacacagaatacgtccccaactcttcctttcagGTGAAGACTTGTAAACCTGCCCTGGGCTACAGCTTTGTTGCAGGCACAACTGATGGAGTTTCAGGTCTTAATATCACTCAGGgtaccggtgcctgaacctccacagcccaaaatcttgggttgttgcatctt Alignment from Spaln_nt2Genome GTGAAGACGTGTAAACCTGCCCTGGGCTACAGTTTTGCCGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGG ttcttcatatgtcttgaaacacagaatacgtccccaactcttcctttcagGTGAAGACTTGTAAACCTGCCCTGGGCTACAGCTTTGTTGCAGGCACAACTGATGGAGTTTCAGGTCTTAATATCACTCAGGgtaccggtgcctgaacctccacagcccaaaatcttgggttgttgcatctt Alignment from Pairagon GTGAAGACGTGTAAACCTGCCCTGGGCTACAGTTTTGCCGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGG ttcttcatatgtcttgaaacacagaatacgtccccaactcttcctttcagGTGAAGACTTGTAAACCTGCCCTGGGCTACAGCTTTGTTGCAGGCACAACTGATGGAGTTTCAGGTCTTAATATCACTCAGGgtaccggtgcctgaacctccacagcccaaaatcttgggttgttgcatctt Alignment from Exonerate_protein2genome GTGAAGACGTGTAAACCTGCCCTGGGCTACAGTTTTGCCGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGG ttcttcatatgtcttgaaacacagaatacgtccccaactcttcctttcagGTGAAGACTTGTAAACCTGCCCTGGGCTACAGCTTTGTTGCAGGCACAACTGATGGAGTTTCAGGTCTTAATATCACTCAGGgtaccggtgcctgaacctccacagcccaaaatcttgggttgttgcatctt Alignment from Exonerate_coding2genome GTGAAGACGTGTAAACCTGCCCTGGGCTACAGTTTTGCCGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGG ttcttcatatgtcttgaaacacagaatacgtccccaactcttcctttcagGTGAAGACTTGTAAACCTGCCCTGGGCTACAGCTTTGTTGCAGGCACAACTGATGGAGTTTCAGGTCTTAATATCACTCAGGgtaccggtgcctgaacctccacagcccaaaatcttgggttgttgcatctt Alignment from GeneWise GTGAAGACGTGTAAACCTGCCCTGGGCTACAGTTTTGCCGCAGGCACAATTGATGGAGTTTCGGGCCTCAATATTACACAGG ttcttcatatgtcttgaaacacagaatacgtccccaactcttcctttcagGTGAAGACTTGTAAACCTGCCCTGGGCTACAGCTTTGTTGCAGGCACAACTGATGGAGTTTCAGGTCTTAATATCACTCAGGgtaccggtgcctgaacctccacagcccaaaatcttgggttgttgcatctt #### Asah2_ID6664_10 --> 0 - 0 Original Alignment ---------------GAGCTGTATGCCTCTGCCTCCCAGGAGGTGACCGGCCCAGTGCTTGCAGCTCACCAGTGGGTGAACATGACAGATGTGAGCGTCCAGCTCAATGCCACACACACA gacagcctggtcattcttaggttatcaaatcttttctttatattttaaagGTAGGTTTTCCACAGGAGCTT---TCATCTGCATCCCAGAAGGATACAGGTTCAGTACTTGCAGCTCACCAGTGGGCAAACATGACAGATCTGAGCATCCAACTCAATGTCTGCCACACAgtaagtatatctggccacaagtgctaaaaggttgtgtaggacaccttcag Alignment from CESAR GAGCTGTATGCCTCTGCCTCCCAGGAGGTGACCGGCCCAGTGCTTGCAGCTCACCAGTGGGTGAACATGACAGATGTGAGCGTCCAGCTCAATGCCACACACACA tcataataggtttaagacagcctggtcattcttaggttattattttaaaggtaggttttccacagGAGCTT---TCATCTGCATCCCAGAAGGATACAGGTTCAGTACTTGCAGCTCACCAGTGGGCAAACATGACAGATCTGAGCATCCAACTCAATGTCTGCCACACAgtaagtatatctggccacaagtgctaaaaggttgtgtaggacaccttcag Alignment from Spaln_aa2Genome GAGCTGTATGCCTCTGCCTCCCAGGAGGTGACCGGCCCAGTGCTTGCAGCTCACCAGTGGGTGAACATGACAGATGTGAGCGTCCAGCTCAATGCCACACACACA gacagcctggtcattcttaggttatcaaatcttttctttatattttaaaggtaggttttccacagGAGCTT---TCATCTGCATCCCAGAAGGATACAGGTTCAGTACTTGCAGCTCACCAGTGGGCAAACATGACAGATCTGAGCATCCAACTCAATGTCTGCCACACAgtaagtatatctggccacaagtgctaaaaggttgtgtaggacaccttcag Alignment from Spaln_nt2Genome CTGTATGCCTCTGCCTCCCAGGAGGTGACCGGCCCAGTGCTTGCAGCTCACCAGTGGGTGAACATGACAGATGTGAGCGTCCAGCTCAATGCCACACACACA gacagcctggtcattcttaggttatcaaatcttttctttatattttaaaggtaggttttccacagGAGCTTTCATCTGCATCCCAGAAGGATACAGGTTCAGTACTTGCAGCTCACCAGTGGGCAAACATGACAGATCTGAGCATCCAACTCAATGTCTGCCACACAgtaagtatatctggccacaagtgctaaaaggttgtgtaggacaccttcag Alignment from Pairagon GAGCTGTATGCCTCTGCCTCCCAGGAGGTGACCGGCCCAGTGCTTGCAGCTCACCAGTGGGTGAACATGACAGATGTGAGCGTCCAGCTCAATGCCACACACACA gacagcctggtcattcttaggttatcaaatcttttctttatattttaaaggtaggttttccacagGAGCT---TTCATCTGCATCCCAGAAGGATACAGGTTCAGTACTTGCAGCTCACCAGTGGGCAAACATGACAGATCTGAGCATCCAACTCAATGTCTGCCACACAgtaagtatatctggccacaagtgctaaaaggttgtgtaggacaccttcag Alignment from Exonerate_protein2genome GAGCTGTATGCCTCTGCCTCCCAGGAGGTGACCGGCCCAGTGCTTGCAGCTCACCAGTGGGTGAACATGACAGATGTGAGCGTCCAGCTCAATGCCACACACACA gacagcctggtcattcttaggttatcaaatcttttctttatattttaaaggtaggttttccacagGAGCTT---TCATCTGCATCCCAGAAGGATACAGGTTCAGTACTTGCAGCTCACCAGTGGGCAAACATGACAGATCTGAGCATCCAACTCAATGTCTGCCACACAgtaagtatatctggccacaagtgctaaaaggttgtgtaggacaccttcag Alignment from Exonerate_coding2genome GAGCTGTATGCCTCTGCCTCCCAGGAGGTGACCGGCCCAGTGCTTGCAGCTCACCAGTGGGTGAACATGACAGATGTGAGCGTCCAGCTCAATGCCACACACACA gacagcctggtcattcttaggttatcaaatcttttctttatattttaaaggtaggttttccacagGAGCTT---TCATCTGCATCCCAGAAGGATACAGGTTCAGTACTTGCAGCTCACCAGTGGGCAAACATGACAGATCTGAGCATCCAACTCAATGTCTGCCACACAgtaagtatatctggccacaagtgctaaaaggttgtgtaggacaccttcag Alignment from GeneWise GAGCTGTATGCCTCTGCCTCCCAGGAGGTGACCGGCCCAGTGCTTGCAGCTCACCAGTGGGTGAACATGACAGATGTGAGCGTCCAGCTCAATGCCACACACACA gacagcctggtcattcttaggttatcaaatcttttctttatattttaaaggtaggttttccacagGAGCTT---TCATCTGCATCCCAGAAGGATACAGGTTCAGTACTTGCAGCTCACCAGTGGGCAAACATGACAGATCTGAGCATCCAACTCAATGTCTGCCACACAgtaagtatatctggccacaagtgctaaaaggttgtgtaggacaccttcag #### Asah2_ID6665_9 --> 0 - 0 Original Alignment CCTAGCATGTGCATGGCCAGCGGACCTGGACAAGACATGTTTGAGAGCACACACATTATAGGACGGATCATCTATCAGAAGGCCAAG acccttaccactattcccaccaaaaatcctgacagcagtcttccctctagCCTAGCATGTGTATGGCCAGTGGTCCTGGACAGGACATGTTTAAGAGCACCCACATCATAGGGCGGATCATCTATCAGAAGGCCAAGgtaagtcttcccattcattcattacacacacaatgcaccaggaagttgct Alignment from CESAR CCTAGCATGTGCATGGCCAGCGGACCTGGACAAGACATGTTTGAGAGCACACACATTATAGGACGGATCATCTATCAGAAGGCCAAG acccttaccactattcccaccaaaaatcctgacagcagtcttccctctagCCTAGCATGTGTATGGCCAGTGGTCCTGGACAGGACATGTTTAAGAGCACCCACATCATAGGGCGGATCATCTATCAGAAGGCCAAGgtaagtcttcccattcattcattacacacacaatgcaccaggaagttgct Alignment from Spaln_aa2Genome CCTAGCATGTGCATGGCCAGCGGACCTGGACAAGACATGTTTGAGAGCACACACATTATAGGACGGATCATCTATCAGAAGGCCAAG acccttaccactattcccaccaaaaatcctgacagcagtcttccctctagCCTAGCATGTGTATGGCCAGTGGTCCTGGACAGGACATGTTTAAGAGCACCCACATCATAGGGCGGATCATCTATCAGAAGGCCAAGgtaagtcttcccattcattcattacacacacaatgcaccaggaagttgct Alignment from Spaln_nt2Genome CCTAGCATGTGCATGGCCAGCGGACCTGGACAAGACATGTTTGAGAGCACACACATTATAGGACGGATCATCTATCAGAAGGCCAAG acccttaccactattcccaccaaaaatcctgacagcagtcttccctctagCCTAGCATGTGTATGGCCAGTGGTCCTGGACAGGACATGTTTAAGAGCACCCACATCATAGGGCGGATCATCTATCAGAAGGCCAAGgtaagtcttcccattcattcattacacacacaatgcaccaggaagttgct Alignment from Pairagon CCTAGCATGTGCATGGCCAGCGGACCTGGACAAGACATGTTTGAGAGCACACACATTATAGGACGGATCATCTATCAGAAGGCCAAG acccttaccactattcccaccaaaaatcctgacagcagtcttccctctagCCTAGCATGTGTATGGCCAGTGGTCCTGGACAGGACATGTTTAAGAGCACCCACATCATAGGGCGGATCATCTATCAGAAGGCCAAGgtaagtcttcccattcattcattacacacacaatgcaccaggaagttgct Alignment from Exonerate_protein2genome CCTAGCATGTGCATGGCCAGCGGACCTGGACAAGACATGTTTGAGAGCACACACATTATAGGACGGATCATCTATCAGAAGGCCAAG acccttaccactattcccaccaaaaatcctgacagcagtcttccctctagCCTAGCATGTGTATGGCCAGTGGTCCTGGACAGGACATGTTTAAGAGCACCCACATCATAGGGCGGATCATCTATCAGAAGGCCAAGgtaagtcttcccattcattcattacacacacaatgcaccaggaagttgct Alignment from Exonerate_coding2genome CCTAGCATGTGCATGGCCAGCGGACCTGGACAAGACATGTTTGAGAGCACACACATTATAGGACGGATCATCTATCAGAAGGCCAAG acccttaccactattcccaccaaaaatcctgacagcagtcttccctctagCCTAGCATGTGTATGGCCAGTGGTCCTGGACAGGACATGTTTAAGAGCACCCACATCATAGGGCGGATCATCTATCAGAAGGCCAAGgtaagtcttcccattcattcattacacacacaatgcaccaggaagttgct Alignment from GeneWise CCTAGCATGTGCATGGCCAGCGGACCTGGACAAGACATGTTTGAGAGCACACACATTATAGGACGGATCATCTATCAGAAGGCCAAG acccttaccactattcccaccaaaaatcctgacagcagtcttccctctagCCTAGCATGTGTATGGCCAGTGGTCCTGGACAGGACATGTTTAAGAGCACCCACATCATAGGGCGGATCATCTATCAGAAGGCCAAGgtaagtcttcccattcattcattacacacacaatgcaccaggaagttgct #### Asah2_ID6669_5 --> 0 - 2 Original Alignment AGCATTGATATAGCTCACACAAATCTTAAACCAGGCAAAATCTTTATCAACAAAGGAAATGTTGCTAATGTGCAGATCAACCGAAGCCCCTCCTCTTACCTTCTGAATCCACAGTCAGAGAGAGCAag agaacctcttagcttgctaaatgcatacaatattcatgtattcatttcagAGCATTGATGTTGCCCACACAAATCTCCAACCTGGCAAAATCTTTATCAATAAGGAAAATGTAGCCAATCTGCAGATCAATCGAAGC---GCATCTTACCTGCTAAATCCACAAGCAAAGAGAGCAaggtaagctattccttatagtattagaagtatatacctcaggttacaaaaga Alignment from CESAR AGCATTGATATAGCTCACACAAATCTTAAACCAGGCAAAATCTTTATCAACAAAGGAAATGTTGCTAATGTGCAGATCAACCGAAGCCCCTCCTCTTACCTTCTGAATCCACAGTCAGAGAGAGCAag agaacctcttagcttgctaaatgcatacaatattcatgtattcatttcagAGCATTGATGTTGCCCACACAAATCTCCAACCTGGCAAAATCTTTATCAATAAGGAAAATGTAGCCAATCTGCAGATCAATCGAAGC---GCATCTTACCTGCTAAATCCACAAGCAAAGAGAGCAaggtaagctattccttatagtattagaagtatatacctcaggttacaaaaga Alignment from Spaln_aa2Genome AGCATTGATATAGCTCACACAAATCTTAAACCAGGCAAAATCTTTATCAACAAAGGAAATGTTGCTAATGTGCAGATCAACCGAAGCCCCTCCTCTTACCTTCTGAATCCACAGTCAGAGAGAGCAAG agaacctcttagcttgctaaatgcatacaatattcatgtattcatttcagAGCATTGATGTTGCCCACACAAATCTCCAACCTGGCAAAATCTTTATCAATAAGGAAAATGTAGCCAATCTGCAGATCAATCGAAGC---GCATCTTACCTGCTAAATCCACAAGCAAAGAGAGCAAGgtaagctattccttatagtattagaagtatatacctcaggttacaaaaga Alignment from Spaln_nt2Genome AGCATTGATATAGCTCACACAAATCTTAAACCAGGCAAAATCTTTATCAACAAAGGAAATGTTGCTAATGTGCAGATCAACCGAAGCCCCTCCTCTTACCTTCTGAATCCACAGTCAGAGAGAGCAAG agaacctcttagcttgctaaatgcatacaatattcatgtattcatttcagAGCATTGATGTTGCCCACACAAATCTCCAACCTGGCAAAATCTTTATCAATAAGGAAAATGTAGCCAATCTGCAGATCAATCGAAGCGCA---TCTTACCTGCTAAATCCACAAGCAAAGAGAGCAAGgtaagctattccttatagtattagaagtatatacctcaggttacaaaaga Alignment from Pairagon AGCATTGATATAGCTCACACAAATCTTAAACCAGGCAAAATCTTTATCAACAAAGGAAATGTTGCTAATGTGCAGATCAACCGAAGCCCCTCCTCTTACCTTCTGAATCCACAGTCAGAGAGAGCAAG agaacctcttagcttgctaaatgcatacaatattcatgtattcatttcagAGCATTGATGTTGCCCACACAAATCTCCAACCTGGCAAAATCTTTATCAATAAGGAAAATGTAGCCAATCTGCAGATCAATCGAAGCG---CATCTTACCTGCTAAATCCACAAGCAAAGAGAGCAAGgtaagctattccttatagtattagaagtatatacctcaggttacaaaaga Alignment from Exonerate_protein2genome AGCATTGATATAGCTCACACAAATCTTAAACCAGGCAAAATCTTTATCAACAAAGGAAATGTTGCTAATGTGCAGATCAACCGAAGCCCCTCCTCTTACCTTCTGAATCCACAGTCAGAGAGAGCAAG agaacctcttagcttgctaaatgcatacaatattcatgtattcatttcagAGCATTGATGTTGCCCACACAAATCTCCAACCTGGCAAAATCTTTATCAATAAGGAAAATGTAGCCAATCTGCAGATCAATCGAAGC---GCATCTTACCTGCTAAATCCACAAGCAAAGAGAGCAAGgtaagctattccttatagtattagaagtatatacctcaggttacaaaaga Alignment from Exonerate_coding2genome AGCATTGATATAGCTCACACAAATCTTAAACCAGGCAAAATCTTTATCAACAAAGGAAATGTTGCTAATGTGCAGATCAACCGAAGCCCCTCCTCTTACCTTCTGAATCCACAGTCAGAGAGAGCAAG agaacctcttagcttgctaaatgcatacaatattcatgtattcatttcagAGCATTGATGTTGCCCACACAAATCTCCAACCTGGCAAAATCTTTATCAATAAGGAAAATGTAGCCAATCTGCAGATCAATCGAAGC---GCATCTTACCTGCTAAATCCACAAGCAAAGAGAGCAAGgtaagctattccttatagtattagaagtatatacctcaggttacaaaaga Alignment from GeneWise AGCATTGATATAGCTCACACAAATCTTAAACCAGGCAAAATCTTTATCAACAAAGGAAATGTTGCTAATGTGCAGATCAACCGAAGCCCCTCCTCTTACCTTCTGAATCCACAGTCAGAGAGAGCAAG agaacctcttagcttgctaaatgcatacaatattcatgtattcatttcagAGCATTGATGTTGCCCACACAAATCTCCAACCTGGCAAAATCTTTATCAATAAGGAAAATGTAGCCAATCTGCAGATCAATCGAAGC---GCATCTTACCTGCTAAATCCACAAGCAAAGAGAGCAAGgtaagctattccttatagtattagaagtatatacctcaggttacaaaaga #### Asrgl1_ID2595_5 --> 1 - 1 Original Alignment aAACTCAGGAACTGTGGGTGCTGTTGCCTTGGACTGCAGAGGAAACTTGGCTTACGCAACCTCTACTGGGGGGATTGTCAATAAAATGGTTGGCCGAGTTGGAGACTCGCCTTGCATAg ggtgtatttctcgctttttaacgcatcttggacacctgtgctctctgcaggATTTCAGGTACTGTTGGTGCTGTTGCCTTGGACTGCCGGGGGAACTTGGCTTATGCCAGCTCTACTGGGGGGATTGTAAATAAAATGGTTGGCCAAGTTGGTGATTCACCCTGCCTAggtatgttatgttggtactaaatcatgtatgtgactgattttttacctcat Alignment from CESAR aAACTCAGGAACTGTGGGTGCTGTTGCCTTGGACTGCAGAGGAAACTTGGCTTACGCAACCTCTACTGGGGGGATTGTCAATAAAATGGTTGGCCGAGTTGGAGACTCGCCTTGCATAg ggtgtatttctcgctttttaacgcatcttggacacctgtgctctctgcaggATTTCAGGTACTGTTGGTGCTGTTGCCTTGGACTGCCGGGGGAACTTGGCTTATGCCAGCTCTACTGGGGGGATTGTAAATAAAATGGTTGGCCAAGTTGGTGATTCACCCTGCCTAggtatgttatgttggtactaaatcatgtatgtgactgattttttacctcat Alignment from Spaln_aa2Genome AAACTCAGGAACTGTGGGTGCTGTTGCCTTGGACTGCAGAGGAAACTTGGCTTACGCAACCTCTACTGGGGGGATTGTCAATAAAATGGTTGGCCGAGTTGGAGACTCGCCTTGCATAG ggtgtatttctcgctttttaacgcatcttggacacctgtgctctctgcagGATTTCAGGTACTGTTGGTGCTGTTGCCTTGGACTGCCGGGGGAACTTGGCTTATGCCAGCTCTACTGGGGGGATTGTAAATAAAATGGTTGGCCAAGTTGGTGATTCACCCTGCCTAGgtatgttatgttggtactaaatcatgtatgtgactgattttttacctcat Alignment from Spaln_nt2Genome AAACTCAGGAACTGTGGGTGCTGTTGCCTTGGACTGCAGAGGAAACTTGGCTTACGCAACCTCTACTGGGGGGATTGTCAATAAAATGGTTGGCCGAGTTGGAGACTCGCCTTGCATAG ggtgtatttctcgctttttaacgcatcttggacacctgtgctctctgcagGATTTCAGGTACTGTTGGTGCTGTTGCCTTGGACTGCCGGGGGAACTTGGCTTATGCCAGCTCTACTGGGGGGATTGTAAATAAAATGGTTGGCCAAGTTGGTGATTCACCCTGCCTAGgtatgttatgttggtactaaatcatgtatgtgactgattttttacctcat Alignment from Pairagon AAACTCAGGAACTGTGGGTGCTGTTGCCTTGGACTGCAGAGGAAACTTGGCTTACGCAACCTCTACTGGGGGGATTGTCAATAAAATGGTTGGCCGAGTTGGAGACTCGCCTTGCATAG ggtgtatttctcgctttttaacgcatcttggacacctgtgctctctgcagGATTTCAGGTACTGTTGGTGCTGTTGCCTTGGACTGCCGGGGGAACTTGGCTTATGCCAGCTCTACTGGGGGGATTGTAAATAAAATGGTTGGCCAAGTTGGTGATTCACCCTGCCTAGgtatgttatgttggtactaaatcatgtatgtgactgattttttacctcat Alignment from Exonerate_protein2genome AAACTCAGGAACTGTGGGTGCTGTTGCCTTGGACTGCAGAGGAAACTTGGCTTACGCAACCTCTACTGGGGGGATTGTCAATAAAATGGTTGGCCGAGTTGGAGACTCGCCTTGCATAG ggtgtatttctcgctttttaacgcatcttggacacctgtgctctctgcagGATTTCAGGTACTGTTGGTGCTGTTGCCTTGGACTGCCGGGGGAACTTGGCTTATGCCAGCTCTACTGGGGGGATTGTAAATAAAATGGTTGGCCAAGTTGGTGATTCACCCTGCCTAGgtatgttatgttggtactaaatcatgtatgtgactgattttttacctcat Alignment from Exonerate_coding2genome AAACTCAGGAACTGTGGGTGCTGTTGCCTTGGACTGCAGAGGAAACTTGGCTTACGCAACCTCTACTGGGGGGATTGTCAATAAAATGGTTGGCCGAGTTGGAGACTCGCCTTGCATAGGA ggtgtatttctcgctttttaacgcatcttggacacctgtgctctctgcagGATTTCAGGTACTGTTGGTGCTGTTGCCTTGGACTGCCGGGGGAACTTGGCTTATGCCAGCTCTACTGGGGGGATTGTAAATAAAATGGTTGGCCAAGTTGGTGATTCACCCTGCCTAGGTatgttatgttggtactaaatcatgtatgtgactgattttttacctcat Alignment from GeneWise AAACTCAGGAACTGTGGGTGCTGTTGCCTTGGACTGCAGAGGAAACTTGGCTTACGCAACCTCTACTGGGGGGATTGTCAATAAAATGGTTGGCCGAGTTGGAGACTCGCCTTGCATAG ggtgtatttctcgctttttaacgcatcttggacacctgtgctctctgcagGATTTCAGGTACTGTTGGTGCTGTTGCCTTGGACTGCCGGGGGAACTTGGCTTATGCCAGCTCTACTGGGGGGATTGTAAATAAAATGGTTGGCCAAGTTGGTGATTCACCCTGCCTAGgtatgttatgttggtactaaatcatgtatgtgactgattttttacctcat #### Asrgl1_ID2596_4 --> 0 - 2 Original Alignment ACACCTCATTGCTTTCTGACTGGCCATGGTGCAGAGAAATTTGCAGAAGACATGGGGATTCCACAGGTCCCTGTAGAAAAACTGATAACTGAGAGAACCAAGAAGCACCTGGAGAAAGAGAAGCTTGAGAAGGGAGCACAGAATGCTGACTGCCCTaa gtgtgattgtggaaaaagggtacagccccctttctgccttctcaacccagACTCCTCACTGCTTTCTGACTGGCCATGGTGCAGAGAAATTTGCAGACGATATGGGTATCCCACAGGTTCCAGTGGAAAAACTGATAAATGAGAAAACCAAGAGGCACCTGAAGAAGGAGAAGCTGGAGAAAGGAGCACAAAATGCTCACTGCCCTaagtatagtccaagtcttgtgatatgataccatggacagctcctcacaccaa Alignment from CESAR ACACCTCATTGCTTTCTGACTGGCCATGGTGCAGAGAAATTTGCAGAAGACATGGGGATTCCACAGGTCCCTGTAGAAAAACTGATAACTGAGAGAACCAAGAAGCACCTGGAGAAAGAGAAGCTTGAGAAGGGAGCACAGAATGCTGACTGCCCTaa gtgtgattgtggaaaaagggtacagccccctttctgccttctcaacccagACTCCTCACTGCTTTCTGACTGGCCATGGTGCAGAGAAATTTGCAGACGATATGGGTATCCCACAGGTTCCAGTGGAAAAACTGATAAATGAGAAAACCAAGAGGCACCTGAAGAAGGAGAAGCTGGAGAAAGGAGCACAAAATGCTCACTGCCCTaagtatagtccaagtcttgtgatatgataccatggacagctcctcacaccaa Alignment from Spaln_aa2Genome ACACCTCATTGCTTTCTGACTGGCCATGGTGCAGAGAAATTTGCAGAAGACATGGGGATTCCACAGGTCCCTGTAGAAAAACTGATAACTGAGAGAACCAAGAAGCACCTGGAGAAAGAGAAGCTTGAGAAGGGAGCACAGAATGCTGACTGCCCTAA gtgtgattgtggaaaaagggtacagccccctttctgccttctcaacccagACTCCTCACTGCTTTCTGACTGGCCATGGTGCAGAGAAATTTGCAGACGATATGGGTATCCCACAGGTTCCAGTGGAAAAACTGATAAATGAGAAAACCAAGAGGCACCTGAAGAAGGAGAAGCTGGAGAAAGGAGCACAAAATGCTCACTGCCCTAAgtatagtccaagtcttgtgatatgataccatggacagctcctcacaccaa Alignment from Spaln_nt2Genome ACACCTCATTGCTTTCTGACTGGCCATGGTGCAGAGAAATTTGCAGAAGACATGGGGATTCCACAGGTCCCTGTAGAAAAACTGATAACTGAGAGAACCAAGAAGCACCTGGAGAAAGAGAAGCTTGAGAAGGGAGCACAGAATGCTGACTGCCCTAA gtgtgattgtggaaaaagggtacagccccctttctgccttctcaacccagACTCCTCACTGCTTTCTGACTGGCCATGGTGCAGAGAAATTTGCAGACGATATGGGTATCCCACAGGTTCCAGTGGAAAAACTGATAAATGAGAAAACCAAGAGGCACCTGAAGAAGGAGAAGCTGGAGAAAGGAGCACAAAATGCTCACTGCCCTAAgtatagtccaagtcttgtgatatgataccatggacagctcctcacaccaa Alignment from Pairagon ACACCTCATTGCTTTCTGACTGGCCATGGTGCAGAGAAATTTGCAGAAGACATGGGGATTCCACAGGTCCCTGTAGAAAAACTGATAACTGAGAGAACCAAGAAGCACCTGGAGAAAGAGAAGCTTGAGAAGGGAGCACAGAATGCTGACTGCCCTAA gtgtgattgtggaaaaagggtacagccccctttctgccttctcaacccagACTCCTCACTGCTTTCTGACTGGCCATGGTGCAGAGAAATTTGCAGACGATATGGGTATCCCACAGGTTCCAGTGGAAAAACTGATAAATGAGAAAACCAAGAGGCACCTGAAGAAGGAGAAGCTGGAGAAAGGAGCACAAAATGCTCACTGCCCTAAgtatagtccaagtcttgtgatatgataccatggacagctcctcacaccaa Alignment from Exonerate_protein2genome ACACCTCATTGCTTTCTGACTGGCCATGGTGCAGAGAAATTTGCAGAAGACATGGGGATTCCACAGGTCCCTGTAGAAAAACTGATAACTGAGAGAACCAAGAAGCACCTGGAGAAAGAGAAGCTTGAGAAGGGAGCACAGAATGCTGACTGCCCTAA gtgtgattgtggaaaaagggtacagccccctttctgccttctcaacccagACTCCTCACTGCTTTCTGACTGGCCATGGTGCAGAGAAATTTGCAGACGATATGGGTATCCCACAGGTTCCAGTGGAAAAACTGATAAATGAGAAAACCAAGAGGCACCTGAAGAAGGAGAAGCTGGAGAAAGGAGCACAAAATGCTCACTGCCCTAAgtatagtccaagtcttgtgatatgataccatggacagctcctcacaccaa Alignment from Exonerate_coding2genome ACACCTCATTGCTTTCTGACTGGCCATGGTGCAGAGAAATTTGCAGAAGACATGGGGATTCCACAGGTCCCTGTAGAAAAACTGATAACTGAGAGAACCAAGAAGCACCTGGAGAAAGAGAAGCTTGAGAAGGGAGCACAGAATGCTGACTGCCCTAA gtgtgattgtggaaaaagggtacagccccctttctgccttctcaacccagACTCCTCACTGCTTTCTGACTGGCCATGGTGCAGAGAAATTTGCAGACGATATGGGTATCCCACAGGTTCCAGTGGAAAAACTGATAAATGAGAAAACCAAGAGGCACCTGAAGAAGGAGAAGCTGGAGAAAGGAGCACAAAATGCTCACTGCCCTAAgtatagtccaagtcttgtgatatgataccatggacagctcctcacaccaa Alignment from GeneWise ACACCTCATTGCTTTCTGACTGGCCATGGTGCAGAGAAATTTGCAGAAGACATGGGGATTCCACAGGTCCCTGTAGAAAAACTGATAACTGAGAGAACCAAGAAGCACCTGGAGAAAGAGAAGCTTGAGAAGGGAGCACAGAATGCTGACTGCCCTAA gtgtgattgtggaaaaagggtacagccccctttctgccttctcaacccagACTCCTCACTGCTTTCTGACTGGCCATGGTGCAGAGAAATTTGCAGACGATATGGGTATCCCACAGGTTCCAGTGGAAAAACTGATAAATGAGAAAACCAAGAGGCACCTGAAGAAGGAGAAGCTGGAGAAAGGAGCACAAAATGCTCACTGCCCTAAgtatagtccaagtcttgtgatatgataccatggacagctcctcacaccaa #### Atad1_ID6722_8 --> 0 - 2 Original Alignment GTGGATAGACACGTAGATCTTCTAGAAGTTGCCCAGGAAACTGATGGATTTTCAGGAAGTGACCTAAAAGAAATGTGTCGGGATGCCGCCCTCCTCTGTGTCAGGGAATATGTCAATTCTACATCAGAAGAGag aataacaggcatgtgagtccataacatccatgctgttccaccttccctagGTTGATAGACATATAGATCTCTTAGCTGTCGCACAGGAAACAGATGGATTTGCAGGTAGTGATCTGAAAGAAATGCGTCAGGACGCTGCCTTACTATGTGTTAGAGAGTATGTTAATTCCACGCCAGAGGAGacgtaaggtaaatcacgagaagggagatctaaactacatacatagctagttg Alignment from CESAR GTGGATAGACACGTAGATCTTCTAGAAGTTGCCCAGGAAACTGATGGATTTTCAGGAAGTGACCTAAAAGAAATGTGTCGGGATGCCGCCCTCCTCTGTGTCAGGGAATATGTCAATTCTACATCAGAAGAGag aataacaggcatgtgagtccataacatccatgctgttccaccttccctagGTTGATAGACATATAGATCTCTTAGCTGTCGCACAGGAAACAGATGGATTTGCAGGTAGTGATCTGAAAGAAATGCGTCAGGACGCTGCCTTACTATGTGTTAGAGAGTATGTTAATTCCACGCCAGAGGAGacgtaaggtaaatcacgagaagggagatctaaactacatacatagctagttg Alignment from Spaln_aa2Genome GTGGATAGACACGTAGATCTTCTAGAAGTTGCCCAGGAAACTGATGGATTTTCAGGAAGTGACCTAAAAGAAATGTGTCGGGATGCCGCCCTCCTCTGTGTCAGGGAATATGTCAATTCTACATCAGAAGAGAG aataacaggcatgtgagtccataacatccatgctgttccaccttccctagGTTGATAGACATATAGATCTCTTAGCTGTCGCACAGGAAACAGATGGATTTGCAGGTAGTGATCTGAAAGAAATGCGTCAGGACGCTGCCTTACTATGTGTTAGAGAGTATGTTAATTCCACGCCAGAGGAGACgtaaggtaaatcacgagaagggagatctaaactacatacatagctagttg Alignment from Spaln_nt2Genome GTGGATAGACACGTAGATCTTCTAGAAGTTGCCCAGGAAACTGATGGATTTTCAGGAAGTGACCTAAAAGAAATGTGTCGGGATGCCGCCCTCCTCTGTGTCAGGGAATATGTCAATTCTACATCAGAAGAGAG aataacaggcatgtgagtccataacatccatgctgttccaccttccctagGTTGATAGACATATAGATCTCTTAGCTGTCGCACAGGAAACAGATGGATTTGCAGGTAGTGATCTGAAAGAAATGCGTCAGGACGCTGCCTTACTATGTGTTAGAGAGTATGTTAATTCCACGCCAGAGGAGACgtaaggtaaatcacgagaagggagatctaaactacatacatagctagttg Alignment from Pairagon GTGGATAGACACGTAGATCTTCTAGAAGTTGCCCAGGAAACTGATGGATTTTCAGGAAGTGACCTAAAAGAAATGTGTCGGGATGCCGCCCTCCTCTGTGTCAGGGAATATGTCAATTCTACATCAGAAGAGAG aataacaggcatgtgagtccataacatccatgctgttccaccttccctagGTTGATAGACATATAGATCTCTTAGCTGTCGCACAGGAAACAGATGGATTTGCAGGTAGTGATCTGAAAGAAATGCGTCAGGACGCTGCCTTACTATGTGTTAGAGAGTATGTTAATTCCACGCCAGAGGAGACgtaaggtaaatcacgagaagggagatctaaactacatacatagctagttg Alignment from Exonerate_protein2genome GTGGATAGACACGTAGATCTTCTAGAAGTTGCCCAGGAAACTGATGGATTTTCAGGAAGTGACCTAAAAGAAATGTGTCGGGATGCCGCCCTCCTCTGTGTCAGGGAATATGTCAATTCTACATCAGAAGAGAG aataacaggcatgtgagtccataacatccatgctgttccaccttccctagGTTGATAGACATATAGATCTCTTAGCTGTCGCACAGGAAACAGATGGATTTGCAGGTAGTGATCTGAAAGAAATGCGTCAGGACGCTGCCTTACTATGTGTTAGAGAGTATGTTAATTCCACGCCAGAGGAGACgtaaggtaaatcacgagaagggagatctaaactacatacatagctagttg Alignment from Exonerate_coding2genome GTGGATAGACACGTAGATCTTCTAGAAGTTGCCCAGGAAACTGATGGATTTTCAGGAAGTGACCTAAAAGAAATGTGTCGGGATGCCGCCCTCCTCTGTGTCAGGGAATATGTCAATTCTACATCAGAAGAGAG aataacaggcatgtgagtccataacatccatgctgttccaccttccctagGTTGATAGACATATAGATCTCTTAGCTGTCGCACAGGAAACAGATGGATTTGCAGGTAGTGATCTGAAAGAAATGCGTCAGGACGCTGCCTTACTATGTGTTAGAGAGTATGTTAATTCCACGCCAGAGGAGACgtaaggtaaatcacgagaagggagatctaaactacatacatagctagttg Alignment from GeneWise GTGGATAGACACGTAGATCTTCTAGAAGTTGCCCAGGAAACTGATGGATTTTCAGGAAGTGACCTAAAAGAAATGTGTCGGGATGCCGCCCTCCTCTGTGTCAGGGAATATGTCAATTCTACATCAGAAGAGAG aataacaggcatgtgagtccataacatccatgctgttccaccttccctagGTTGATAGACATATAGATCTCTTAGCTGTCGCACAGGAAACAGATGGATTTGCAGGTAGTGATCTGAAAGAAATGCGTCAGGACGCTGCCTTACTATGTGTTAGAGAGTATGTTAATTCCACGCCAGAGGAGACgtaaggtaaatcacgagaagggagatctaaactacatacatagctagttg #### Atad1_ID6723_7 --> 0 - 0 Original Alignment GCTCTAAAACAAAGAGAAGCAATTTTAAAGCTCATCTTGAAAAATGAAAAT tctccaagatccctagcaatttcttgcagaattttgctgttgttaaacagGCTCTAAAACAAAGAGAAGCAATTTTGAAGCTCATCTTGAAAAATGAAAATgcgagttcacactcttttggagtagccatatatcattcttttaagtttag Alignment from CESAR GCTCTAAAACAAAGAGAAGCAATTTTAAAGCTCATCTTGAAAAATGAAAAT tctccaagatccctagcaatttcttgcagaattttgctgttgttaaacagGCTCTAAAACAAAGAGAAGCAATTTTGAAGCTCATCTTGAAAAATGAAAATgcgagttcacactcttttggagtagccatatatcattcttttaagtttag Alignment from Spaln_aa2Genome GCTCTAAAACAAAGAGAAGCAATTTTAAAGCTCATCTTGAAAAATGAAAAT tctccaagatccctagcaatttcttgcagaattttgctgttgttaaacagGCTCTAAAACAAAGAGAAGCAATTTTGAAGCTCATCTTGAAAAATGAAAATgcgagttcacactcttttggagtagccatatatcattcttttaagtttag Alignment from Spaln_nt2Genome GCTCTAAAACAAAGAGAAGCAATTTTAAAGCTCATCTTGAAAAATGAAAAT tctccaagatccctagcaatttcttgcagaattttgctgttgttaaacagGCTCTAAAACAAAGAGAAGCAATTTTGAAGCTCATCTTGAAAAATGAAAATgcgagttcacactcttttggagtagccatatatcattcttttaagtttag Alignment from Pairagon GCTCTAAAACAAAGAGAAGCAATTTTAAAGCTCATCTTGAAAAATGAAAAT tctccaagatccctagcaatttcttgcagaattttgctgttgttaaacagGCTCTAAAACAAAGAGAAGCAATTTTGAAGCTCATCTTGAAAAATGAAAATgcgagttcacactcttttggagtagccatatatcattcttttaagtttag Alignment from Exonerate_protein2genome GCTCTAAAACAAAGAGAAGCAATTTTAAAGCTCATCTTGAAAAATGAAAAT tctccaagatccctagcaatttcttgcagaattttgctgttgttaaacagGCTCTAAAACAAAGAGAAGCAATTTTGAAGCTCATCTTGAAAAATGAAAATgcgagttcacactcttttggagtagccatatatcattcttttaagtttag Alignment from Exonerate_coding2genome GCTCTAAAACAAAGAGAAGCAATTTTAAAGCTCATCTTGAAAAATGAAAAT tctccaagatccctagcaatttcttgcagaattttgctgttgttaaacagGCTCTAAAACAAAGAGAAGCAATTTTGAAGCTCATCTTGAAAAATGAAAATgcgagttcacactcttttggagtagccatatatcattcttttaagtttag Alignment from GeneWise tctccaagatccctagcaatttcttgcagaattttgctgttgttaaacaggctctaaaacaaagagaagcaattttgaagctcatcttgaaaaatgaaaatgcgagttcacactcttttggagtagccatatatcattcttttaagtttag #### Atad1_ID6727_3 --> 0 - 1 Original Alignment GTTACTTGGAGTGATATAGCAGGTTTAGATGACGTCATTACAGATCTGAAAGACACAGTCATCTTACCTATCAAAAAGAAGCATTTGTTTGAGAATTCCAGACTACTGCAGCCTCCAAAAg ttgaattttgtttatgtttagatgtgcacctttcctggcctcttaaacagGTCACTTGGAGTGATATAGCAGGCTTAGACGATGTCATTGCTGATCTAAAAGGCACAGTTATCTTACCCATCAAAAGAAAACATTTGTTTGAGAATTCCAGACTCCTGCAGCCTCCTAAGggtgagtttcaggcttcaactggataacattgctatcataataaaattcat Alignment from CESAR GTTACTTGGAGTGATATAGCAGGTTTAGATGACGTCATTACAGATCTGAAAGACACAGTCATCTTACCTATCAAAAAGAAGCATTTGTTTGAGAATTCCAGACTACTGCAGCCTCCAAAAg ttgaattttgtttatgtttagatgtgcacctttcctggcctcttaaacagGTCACTTGGAGTGATATAGCAGGCTTAGACGATGTCATTGCTGATCTAAAAGGCACAGTTATCTTACCCATCAAAAGAAAACATTTGTTTGAGAATTCCAGACTCCTGCAGCCTCCTAAGggtgagtttcaggcttcaactggataacattgctatcataataaaattcat Alignment from Spaln_aa2Genome GTTACTTGGAGTGATATAGCAGGTTTAGATGACGTCATTACAGATCTGAAAGACACAGTCATCTTACCTATCAAAAAGAAGCATTTGTTTGAGAATTCCAGACTACTGCAGCCTCCAAAAG ttgaattttgtttatgtttagatgtgcacctttcctggcctcttaaacagGTCACTTGGAGTGATATAGCAGGCTTAGACGATGTCATTGCTGATCTAAAAGGCACAGTTATCTTACCCATCAAAAGAAAACATTTGTTTGAGAATTCCAGACTCCTGCAGCCTCCTAAGGgtgagtttcaggcttcaactggataacattgctatcataataaaattcat Alignment from Spaln_nt2Genome GTTACTTGGAGTGATATAGCAGGTTTAGATGACGTCATTACAGATCTGAAAGACACAGTCATCTTACCTATCAAAAAGAAGCATTTGTTTGAGAATTCCAGACTACTGCAGCCTCCAAAAG ttgaattttgtttatgtttagatgtgcacctttcctggcctcttaaacagGTCACTTGGAGTGATATAGCAGGCTTAGACGATGTCATTGCTGATCTAAAAGGCACAGTTATCTTACCCATCAAAAGAAAACATTTGTTTGAGAATTCCAGACTCCTGCAGCCTCCTAAGGgtgagtttcaggcttcaactggataacattgctatcataataaaattcat Alignment from Pairagon GTTACTTGGAGTGATATAGCAGGTTTAGATGACGTCATTACAGATCTGAAAGACACAGTCATCTTACCTATCAAAAAGAAGCATTTGTTTGAGAATTCCAGACTACTGCAGCCTCCAAAAG ttgaattttgtttatgtttagatgtgcacctttcctggcctcttaaacagGTCACTTGGAGTGATATAGCAGGCTTAGACGATGTCATTGCTGATCTAAAAGGCACAGTTATCTTACCCATCAAAAGAAAACATTTGTTTGAGAATTCCAGACTCCTGCAGCCTCCTAAGGgtgagtttcaggcttcaactggataacattgctatcataataaaattcat Alignment from Exonerate_protein2genome GTTACTTGGAGTGATATAGCAGGTTTAGATGACGTCATTACAGATCTGAAAGACACAGTCATCTTACCTATCAAAAAGAAGCATTTGTTTGAGAATTCCAGACTACTGCAGCCTCCAAAAG ttgaattttgtttatgtttagatgtgcacctttcctggcctcttaaacagGTCACTTGGAGTGATATAGCAGGCTTAGACGATGTCATTGCTGATCTAAAAGGCACAGTTATCTTACCCATCAAAAGAAAACATTTGTTTGAGAATTCCAGACTCCTGCAGCCTCCTAAGGgtgagtttcaggcttcaactggataacattgctatcataataaaattcat Alignment from Exonerate_coding2genome GTTACTTGGAGTGATATAGCAGGTTTAGATGACGTCATTACAGATCTGAAAGACACAGTCATCTTACCTATCAAAAAGAAGCATTTGTTTGAGAATTCCAGACTACTGCAGCCTCCAAAAG ttgaattttgtttatgtttagatgtgcacctttcctggcctcttaaacagGTCACTTGGAGTGATATAGCAGGCTTAGACGATGTCATTGCTGATCTAAAAGGCACAGTTATCTTACCCATCAAAAGAAAACATTTGTTTGAGAATTCCAGACTCCTGCAGCCTCCTAAGGgtgagtttcaggcttcaactggataacattgctatcataataaaattcat Alignment from GeneWise GTTACTTGGAGTGATATAGCAGGTTTAGATGACGTCATTACAGATCTGAAAGACACAGTCATCTTACCTATCAAAAAGAAGCATTTGTTTGAGAATTCCAGACTACTGCAGCCTCCAAAAG ttgaattttgtttatgtttagatgtgcacctttcctggcctcttaaacagGTCACTTGGAGTGATATAGCAGGCTTAGACGATGTCATTGCTGATCTAAAAGGCACAGTTATCTTACCCATCAAAAGAAAACATTTGTTTGAGAATTCCAGACTCCTGCAGCCTCCTAAGGgtgagtttcaggcttcaactggataacattgctatcataataaaattcat #### Atl3_ID2161_3 --> 0 - 0 Original Alignment AAGGAAGGTGGTCATTCAGACTGGTTGGGTGACCCAGAAGAACCTCTGACAGGATTTTCATGGCGAGGAGGCTCTGATCCAGAAACTACTGGGATTCAGATTTGGAGTGAAGTTTTCACTGTGAAGAAGCCATGTGGAAAAAAG ttctgtgtgcgtttctcagtatgttatcatgcgtctttattttgttccagAGAGAGGGGGGGCATTCAGACTGGTTGGGTGACCCAGAAGAGCCTTTAATAGGATTTTCGTGGCATGGAGGGTCTGACCCAGAAACACCAGGGATTCAAAATTGGACTGAAGTTTTTACAGCAAAAAAGCCATGTGGGAGAAAGgtaagtaagtttgatggaaaaaaatttagactcagttggttgcgtaagtc Alignment from CESAR AAGGAAGGTGGTCATTCAGACTGGTTGGGTGACCCAGAAGAACCTCTGACAGGATTTTCATGGCGAGGAGGCTCTGATCCAGAAACTACTGGGATTCAGATTTGGAGTGAAGTTTTCACTGTGAAGAAGCCATGTGGAAAAAAG ttctgtgtgcgtttctcagtatgttatcatgcgtctttattttgttccagAGAGAGGGGGGGCATTCAGACTGGTTGGGTGACCCAGAAGAGCCTTTAATAGGATTTTCGTGGCATGGAGGGTCTGACCCAGAAACACCAGGGATTCAAAATTGGACTGAAGTTTTTACAGCAAAAAAGCCATGTGGGAGAAAGgtaagtaagtttgatggaaaaaaatttagactcagttggttgcgtaagtc Alignment from Spaln_aa2Genome AAGGAAGGTGGTCATTCAGACTGGTTGGGTGACCCAGAAGAACCTCTGACAGGATTTTCATGGCGAGGAGGCTCTGATCCAGAAACTACTGGGATTCAGATTTGGAGTGAAGTTTTCACTGTGAAGAAGCCATGTGGAAAAAAG ttctgtgtgcgtttctcagtatgttatcatgcgtctttattttgttccagAGAGAGGGGGGGCATTCAGACTGGTTGGGTGACCCAGAAGAGCCTTTAATAGGATTTTCGTGGCATGGAGGGTCTGACCCAGAAACACCAGGGATTCAAAATTGGACTGAAGTTTTTACAGCAAAAAAGCCATGTGGGAGAAAGgtaagtaagtttgatggaaaaaaatttagactcagttggttgcgtaagtc Alignment from Spaln_nt2Genome AAGGAAGGTGGTCATTCAGACTGGTTGGGTGACCCAGAAGAACCTCTGACAGGATTTTCATGGCGAGGAGGCTCTGATCCAGAAACTACTGGGATTCAGATTTGGAGTGAAGTTTTCACTGTGAAGAAGCCATGTGGAAAAAAG ttctgtgtgcgtttctcagtatgttatcatgcgtctttattttgttccagAGAGAGGGGGGGCATTCAGACTGGTTGGGTGACCCAGAAGAGCCTTTAATAGGATTTTCGTGGCATGGAGGGTCTGACCCAGAAACACCAGGGATTCAAAATTGGACTGAAGTTTTTACAGCAAAAAAGCCATGTGGGAGAAAGgtaagtaagtttgatggaaaaaaatttagactcagttggttgcgtaagtc Alignment from Pairagon AAGGAAGGTGGTCATTCAGACTGGTTGGGTGACCCAGAAGAACCTCTGACAGGATTTTCATGGCGAGGAGGCTCTGATCCAGAAACTACTGGGATTCAGATTTGGAGTGAAGTTTTCACTGTGAAGAAGCCATGTGGAAAAAAG ttctgtgtgcgtttctcagtatgttatcatgcgtctttattttgttccagAGAGAGGGGGGGCATTCAGACTGGTTGGGTGACCCAGAAGAGCCTTTAATAGGATTTTCGTGGCATGGAGGGTCTGACCCAGAAACACCAGGGATTCAAAATTGGACTGAAGTTTTTACAGCAAAAAAGCCATGTGGGAGAAAGgtaagtaagtttgatggaaaaaaatttagactcagttggttgcgtaagtc Alignment from Exonerate_protein2genome AAGGAAGGTGGTCATTCAGACTGGTTGGGTGACCCAGAAGAACCTCTGACAGGATTTTCATGGCGAGGAGGCTCTGATCCAGAAACTACTGGGATTCAGATTTGGAGTGAAGTTTTCACTGTGAAGAAGCCATGTGGAAAAAAG ttctgtgtgcgtttctcagtatgttatcatgcgtctttattttgttccagAGAGAGGGGGGGCATTCAGACTGGTTGGGTGACCCAGAAGAGCCTTTAATAGGATTTTCGTGGCATGGAGGGTCTGACCCAGAAACACCAGGGATTCAAAATTGGACTGAAGTTTTTACAGCAAAAAAGCCATGTGGGAGAAAGgtaagtaagtttgatggaaaaaaatttagactcagttggttgcgtaagtc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AAGGAAGGTGGTCATTCAGACTGGTTGGGTGACCCAGAAGAACCTCTGACAGGATTTTCATGGCGAGGAGGCTCTGATCCAGAAACTACTGGGATTCAGATTTGGAGTGAAGTTTTCACTGTGAAGAAGCCATGTGGAAAAAAG ttctgtgtgcgtttctcagtatgttatcatgcgtctttattttgttccagAGAGAGGGGGGGCATTCAGACTGGTTGGGTGACCCAGAAGAGCCTTTAATAGGATTTTCGTGGCATGGAGGGTCTGACCCAGAAACACCAGGGATTCAAAATTGGACTGAAGTTTTTACAGCAAAAAAGCCATGTGGGAGAAAGgtaagtaagtttgatggaaaaaaatttagactcagttggttgcgtaagtc #### Atl3_ID2163_5 --> 0 - 0 Original Alignment ATTTACAATTTGTCCCAGAATATTCAGGAAGATGATCTTCAGCAGCTACAG gcctcacttctcaccatggttttttgcattttttcccgctccacttgcagATTTACAATCTCTCACAGAACATCCAAGAAGAAGATCTTCAGCAACTACAAgtaagaagtgattggaatgcaagagccagagatttttgtgtgtactagct Alignment from CESAR ATTTACAATTTGTCCCAGAATATTCAGGAAGATGATCTTCAGCAGCTACAG gcctcacttctcaccatggttttttgcattttttcccgctccacttgcagATTTACAATCTCTCACAGAACATCCAAGAAGAAGATCTTCAGCAACTACAAgtaagaagtgattggaatgcaagagccagagatttttgtgtgtactagct Alignment from Spaln_aa2Genome ATTTACAATTTGTCCCAGAATATTCAGGAAGATGATCTTCAGCAGCTACAG gcctcacttctcaccatggttttttgcattttttcccgctccacttgcagATTTACAATCTCTCACAGAACATCCAAGAAGAAGATCTTCAGCAACTACAAgtaagaagtgattggaatgcaagagccagagatttttgtgtgtactagct Alignment from Spaln_nt2Genome ATTTACAATTTGTCCCAGAATATTCAGGAAGATGATCTTCAGCAGCTACAG gcctcacttctcaccatggttttttgcattttttcccgctccacttgcagATTTACAATCTCTCACAGAACATCCAAGAAGAAGATCTTCAGCAACTACAAgtaagaagtgattggaatgcaagagccagagatttttgtgtgtactagct Alignment from Pairagon ATTTACAATTTGTCCCAGAATATTCAGGAAGATGATCTTCAGCAGCTACAG gcctcacttctcaccatggttttttgcattttttcccgctccacttgcagATTTACAATCTCTCACAGAACATCCAAGAAGAAGATCTTCAGCAACTACAAgtaagaagtgattggaatgcaagagccagagatttttgtgtgtactagct Alignment from Exonerate_protein2genome ATTTACAATTTGTCCCAGAATATTCAGGAAGATGATCTTCAGCAGCTACAG gcctcacttctcaccatggttttttgcattttttcccgctccacttgcagATTTACAATCTCTCACAGAACATCCAAGAAGAAGATCTTCAGCAACTACAAgtaagaagtgattggaatgcaagagccagagatttttgtgtgtactagct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATTTACAATTTGTCCCAGAATATTCAGGAAGATGATCTTCAGCAGCTACAG gcctcacttctcaccatggttttttgcattttttcccgctccacttgcagATTTACAATCTCTCACAGAACATCCAAGAAGAAGATCTTCAGCAACTACAAgtaagaagtgattggaatgcaagagccagagatttttgtgtgtactagct #### Atl3_ID2164_6 --> 0 - 0 Original Alignment CTCTTCACAGAATATGGCCGCCTGGCAATGGATGAAATTTTCCAAAAACCTTTTCAG ctgttgaaaaagatgataagaatactgatcaaaccctccgctctccacagCTCTTTACTGAATATGGCCGC---ACAATAGATGAAATATTTCAGAGGCCTTTTCAGgtaagattatggtatcgaataccctgtcacttacggtatcgaataccctg Alignment from CESAR CTCTTCACAGAATATGGCCGCCTGGCAATGGATGAAATTTTCCAAAAACCTTTTCAG ctgttgaaaaagatgataagaatactgatcaaaccctccgctctccacagCTCTTTACTGAATATGGCCGC---ACAATAGATGAAATATTTCAGAGGCCTTTTCAGgtaagattatggtatcgaataccctgtcacttacggtatcgaataccctg Alignment from Spaln_aa2Genome CTCTTCACAGAATATGGCCGCCTGGCAATGGATGAAATTTTCCAAAAACCTTTTCAG ctgttgaaaaagatgataagaatactgatcaaaccctccgctctccacagCTCTTTACTGAATATGGCCGC---ACAATAGATGAAATATTTCAGAGGCCTTTTCAGgtaagattatggtatcgaataccctgtcacttacggtatcgaataccctg Alignment from Spaln_nt2Genome CTCTTCACAGAATATGGCCGCCTGGCAATGGATGAAATTTTCCAAAAACCTTTTCAG ctgttgaaaaagatgataagaatactgatcaaaccctccgctctccacagCTCTTTACTGAATATGGCCGC---ACAATAGATGAAATATTTCAGAGGCCTTTTCAGgtaagattatggtatcgaataccctgtcacttacggtatcgaataccctg Alignment from Pairagon CTCTTCACAGAATATGGCCGCCTGGCAATGGATGAAATTTTCCAAAAACCTTTTCAG ctgttgaaaaagatgataagaatactgatcaaaccctccgctctccacagCTCTTTACTGAATATGGCCGC---ACAATAGATGAAATATTTCAGAGGCCTTTTCAGgtaagattatggtatcgaataccctgtcacttacggtatcgaataccctg Alignment from Exonerate_protein2genome CTCTTCACAGAATATGGCCGCCTGGCAATGGATGAAATTTTCCAAAAACCTTTTCAG ctgttgaaaaagatgataagaatactgatcaaaccctccgctctccacagCTCTTTACTGAATATGGCCGC---ACAATAGATGAAATATTTCAGAGGCCTTTTCAGgtaagattatggtatcgaataccctgtcacttacggtatcgaataccctg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTCTTCACAGAATATGGCCGCCTGGCAATGGATGAAATTTTCCAAAAACCTTTTCAG ctgttgaaaaagatgataagaatactgatcaaaccctccgctctccacagCTCTTTACTGAATATGGCCGC---ACAATAGATGAAATATTTCAGAGGCCTTTTCAGgtaagattatggtatcgaataccctgtcacttacggtatcgaataccctg #### Atl3_ID2166_8 --> 0 - 1 Original Alignment GTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCCGATGTCACCTGTTTTCTCTTACCACATCCAGGGCTCCAGGTGGCCACAAGCCCCAACTTTGATGGGAAATTGAAAg gtttgtttctccctgcctgaaaaacactttcctgcattgtgtctctgcagGTAAAGGAGCATCAACATGAAGAGAATCAGAATGTGAGAAACCACATCTATTCATGCTTTTCTGATGTAGCCTGTTATCTCTTACCACATCCTGGGCTTCAGGTGGCAACAAGCCCCAACTTTGATGGGAAACTGAAGggtaggtacagtattggattctgcatattagacacactactggtgattttt Alignment from CESAR GTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCCGATGTCACCTGTTTTCTCTTACCACATCCAGGGCTCCAGGTGGCCACAAGCCCCAACTTTGATGGGAAATTGAAAg gtttgtttctccctgcctgaaaaacactttcctgcattgtgtctctgcagGTAAAGGAGCATCAACATGAAGAGAATCAGAATGTGAGAAACCACATCTATTCATGCTTTTCTGATGTAGCCTGTTATCTCTTACCACATCCTGGGCTTCAGGTGGCAACAAGCCCCAACTTTGATGGGAAACTGAAGggtaggtacagtattggattctgcatattagacacactactggtgattttt Alignment from Spaln_aa2Genome GTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCCGATGTCACCTGTTTTCTCTTACCACATCCAGGGCTCCAGGTGGCCACAAGCCCCAACTTTGATGGGAAATTGAAAG gtttgtttctccctgcctgaaaaacactttcctgcattgtgtctctgcagGTAAAGGAGCATCAACATGAAGAGAATCAGAATGTGAGAAACCACATCTATTCATGCTTTTCTGATGTAGCCTGTTATCTCTTACCACATCCTGGGCTTCAGGTGGCAACAAGCCCCAACTTTGATGGGAAACTGAAGGgtaggtacagtattggattctgcatattagacacactactggtgattttt Alignment from Spaln_nt2Genome GTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCCGATGTCACCTGTTTTCTCTTACCACATCCAGGGCTCCAGGTGGCCACAAGCCCCAACTTTGATGGGAAATTGAAAG gtttgtttctccctgcctgaaaaacactttcctgcattgtgtctctgcagGTAAAGGAGCATCAACATGAAGAGAATCAGAATGTGAGAAACCACATCTATTCATGCTTTTCTGATGTAGCCTGTTATCTCTTACCACATCCTGGGCTTCAGGTGGCAACAAGCCCCAACTTTGATGGGAAACTGAAGGgtaggtacagtattggattctgcatattagacacactactggtgattttt Alignment from Pairagon GTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCCGATGTCACCTGTTTTCTCTTACCACATCCAGGGCTCCAGGTGGCCACAAGCCCCAACTTTGATGGGAAATTGAAAG gtttgtttctccctgcctgaaaaacactttcctgcattgtgtctctgcagGTAAAGGAGCATCAACATGAAGAGAATCAGAATGTGAGAAACCACATCTATTCATGCTTTTCTGATGTAGCCTGTTATCTCTTACCACATCCTGGGCTTCAGGTGGCAACAAGCCCCAACTTTGATGGGAAACTGAAGGgtaggtacagtattggattctgcatattagacacactactggtgattttt Alignment from Exonerate_protein2genome GTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCCGATGTCACCTGTTTTCTCTTACCACATCCAGGGCTCCAGGTGGCCACAAGCCCCAACTTTGATGGGAAATTGAAAG gtttgtttctccctgcctgaaaaacactttcctgcattgtgtctctgcagGTAAAGGAGCATCAACATGAAGAGAATCAGAATGTGAGAAACCACATCTATTCATGCTTTTCTGATGTAGCCTGTTATCTCTTACCACATCCTGGGCTTCAGGTGGCAACAAGCCCCAACTTTGATGGGAAACTGAAGGgtaggtacagtattggattctgcatattagacacactactggtgattttt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCCGATGTCACCTGTTTTCTCTTACCACATCCAGGGCTCCAGGTGGCCACAAGCCCCAACTTTGATGGGAAATTGAAAG gtttgtttctccctgcctgaaaaacactttcctgcattgtgtctctgcagGTAAAGGAGCATCAACATGAAGAGAATCAGAATGTGAGAAACCACATCTATTCATGCTTTTCTGATGTAGCCTGTTATCTCTTACCACATCCTGGGCTTCAGGTGGCAACAAGCCCCAACTTTGATGGGAAACTGAAGGgtaggtacagtattggattctgcatattagacacactactggtgattttt #### Atrnl1_ID12432_5 --> 1 - 1 Original Alignment gATCAATTCCTGTCCTAACAACTGCTCTGGTCATGGAAAGTGTACAACCAGTGTCTCTGTTGCAAGTCAAGTGTATTGTGAATGCGACAAATACTGGAAAGGGGAAGCATGTGACATTCCTTACTGTAAAGCCAATTGTGGGAGTCCAGATCATGGCTACTGTGACCTAACAGGAGAGAAACTCTGTGTCTGCAACGATAGTTGGCAAg gcaaaagtggtctggctggagtagctgtgagtgcctttccctcttctcaggATCAATTCCTGTCCTAACAATTTTTCTGGCCATGGAAAGTGCACG---AGTGTCTCTGTTGCAACTCAGGTGTATTGTGAATGTGACAAATACTGGAAGGGGGAAGCATGTGATATTCCTTACTGTAAAGCCAATTGTGAGAGTCCAGATCATGGTTACTGTGACCTAACAGGAGAGAAGCTCTGTGTCTGCAATGATAGTTGGCAAggtgagtccttaacatggaatgtcaggtgtgctgcaatgctatcatgacga Alignment from CESAR gATCAATTCCTGTCCTAACAACTGCTCTGGTCATGGAAAGTGTACAACCAGTGTCTCTGTTGCAAGTCAAGTGTATTGTGAATGCGACAAATACTGGAAAGGGGAAGCATGTGACATTCCTTACTGTAAAGCCAATTGTGGGAGTCCAGATCATGGCTACTGTGACCTAACAGGAGAGAAACTCTGTGTCTGCAACGATAGTTGGCAAg gcaaaagtggtctggctggagtagctgtgagtgcctttccctcttctcaggATCAATTCCTGTCCTAACAATTTTTCTGGCCATGGAAAGTGCACG---AGTGTCTCTGTTGCAACTCAGGTGTATTGTGAATGTGACAAATACTGGAAGGGGGAAGCATGTGATATTCCTTACTGTAAAGCCAATTGTGAGAGTCCAGATCATGGTTACTGTGACCTAACAGGAGAGAAGCTCTGTGTCTGCAATGATAGTTGGCAAggtgagtccttaacatggaatgtcaggtgtgctgcaatgctatcatgacga Alignment from Spaln_aa2Genome GATCAATTCCTGTCCTAACAACTGCTCTGGTCATGGAAAGTGTACAACCAGTGTCTCTGTTGCAAGTCAAGTGTATTGTGAATGCGACAAATACTGGAAAGGGGAAGCATGTGACATTCCTTACTGTAAAGCCAATTGTGGGAGTCCAGATCATGGCTACTGTGACCTAACAGGAGAGAAACTCTGTGTCTGCAACGATAGTTGGCAAG gcaaaagtggtctggctggagtagctgtgagtgcctttccctcttctcagGATCAATTCCTGTCCTAACAATTTTTCTGGCCATGGAAAGTGC---ACGAGTGTCTCTGTTGCAACTCAGGTGTATTGTGAATGTGACAAATACTGGAAGGGGGAAGCATGTGATATTCCTTACTGTAAAGCCAATTGTGAGAGTCCAGATCATGGTTACTGTGACCTAACAGGAGAGAAGCTCTGTGTCTGCAATGATAGTTGGCAAGgtgagtccttaacatggaatgtcaggtgtgctgcaatgctatcatgacga Alignment from Spaln_nt2Genome GATCAATTCCTGTCCTAACAACTGCTCTGGTCATGGAAAGTGTACAACCAGTGTCTCTGTTGCAAGTCAAGTGTATTGTGAATGCGACAAATACTGGAAAGGGGAAGCATGTGACATTCCTTACTGTAAAGCCAATTGTGGGAGTCCAGATCATGGCTACTGTGACCTAACAGGAGAGAAACTCTGTGTCTGCAACGATAGTTGGCAAG gcaaaagtggtctggctggagtagctgtgagtgcctttccctcttctcagGATCAATTCCTGTCCTAACAATTTTTCTGGCCATGGAAAGTG---CACGAGTGTCTCTGTTGCAACTCAGGTGTATTGTGAATGTGACAAATACTGGAAGGGGGAAGCATGTGATATTCCTTACTGTAAAGCCAATTGTGAGAGTCCAGATCATGGTTACTGTGACCTAACAGGAGAGAAGCTCTGTGTCTGCAATGATAGTTGGCAAGgtgagtccttaacatggaatgtcaggtgtgctgcaatgctatcatgacga Alignment from Pairagon GATCAATTCCTGTCCTAACAACTGCTCTGGTCATGGAAAGTGTACAACCAGTGTCTCTGTTGCAAGTCAAGTGTATTGTGAATGCGACAAATACTGGAAAGGGGAAGCATGTGACATTCCTTACTGTAAAGCCAATTGTGGGAGTCCAGATCATGGCTACTGTGACCTAACAGGAGAGAAACTCTGTGTCTGCAACGATAGTTGGCAAG gcaaaagtggtctggctggagtagctgtgagtgcctttccctcttctcagGATCAATTCCTGTCCTAACAATTTTTCTGGCCATGGAAAGTGC---ACGAGTGTCTCTGTTGCAACTCAGGTGTATTGTGAATGTGACAAATACTGGAAGGGGGAAGCATGTGATATTCCTTACTGTAAAGCCAATTGTGAGAGTCCAGATCATGGTTACTGTGACCTAACAGGAGAGAAGCTCTGTGTCTGCAATGATAGTTGGCAAGgtgagtccttaacatggaatgtcaggtgtgctgcaatgctatcatgacga Alignment from Exonerate_protein2genome GATCAATTCCTGTCCTAACAACTGCTCTGGTCATGGAAAGTGTACAACCAGTGTCTCTGTTGCAAGTCAAGTGTATTGTGAATGCGACAAATACTGGAAAGGGGAAGCATGTGACATTCCTTACTGTAAAGCCAATTGTGGGAGTCCAGATCATGGCTACTGTGACCTAACAGGAGAGAAACTCTGTGTCTGCAACGATAGTTGGCAAG gcaaaagtggtctggctggagtagctgtgagtgcctttccctcttctcagGATCAATTCCTGTCCTAACAATTTTTCTGGCCATGGAAAGTGC---ACGAGTGTCTCTGTTGCAACTCAGGTGTATTGTGAATGTGACAAATACTGGAAGGGGGAAGCATGTGATATTCCTTACTGTAAAGCCAATTGTGAGAGTCCAGATCATGGTTACTGTGACCTAACAGGAGAGAAGCTCTGTGTCTGCAATGATAGTTGGCAAGgtgagtccttaacatggaatgtcaggtgtgctgcaatgctatcatgacga Alignment from Exonerate_coding2genome GATCAATTCCTGTCCTAACAACTGCTCTGGTCATGGAAAGTGTACAACCAGTGTCTCTGTTGCAAGTCAAGTGTATTGTGAATGCGACAAATACTGGAAAGGGGAAGCATGTGACATTCCTTACTGTAAAGCCAATTGTGGGAGTCCAGATCATGGCTACTGTGACCTAACAGGAGAGAAACTCTGTGTCTGCAACGATAGTTGGCAAG gcaaaagtggtctggctggagtagctgtgagtgcctttccctcttctcagGATCAATTCCTGTCCTAACAATTTTTCTGGCCATGGAAAGTGC---ACGAGTGTCTCTGTTGCAACTCAGGTGTATTGTGAATGTGACAAATACTGGAAGGGGGAAGCATGTGATATTCCTTACTGTAAAGCCAATTGTGAGAGTCCAGATCATGGTTACTGTGACCTAACAGGAGAGAAGCTCTGTGTCTGCAATGATAGTTGGCAAGgtgagtccttaacatggaatgtcaggtgtgctgcaatgctatcatgacga Alignment from GeneWise GATCAATTCCTGTCCTAACAACTGCTCTGGTCATGGAAAGTGTACAACCAGTGTCTCTGTTGCAAGTCAAGTGTATTGTGAATGCGACAAATACTGGAAAGGGGAAGCATGTGACATTCCTTACTGTAAAGCCAATTGTGGGAGTCCAGATCATGGCTACTGTGACCTAACAGGAGAGAAACTCTGTGTCTGCAACGATAGTTGGCAAG gcaaaagtggtctggctggagtagctgtgagtgcctttccctcttctcagGATCAATTCCTGTCCTAACAATTTTTCTGGCCATGGAAAGTGC---ACGAGTGTCTCTGTTGCAACTCAGGTGTATTGTGAATGTGACAAATACTGGAAGGGGGAAGCATGTGATATTCCTTACTGTAAAGCCAATTGTGAGAGTCCAGATCATGGTTACTGTGACCTAACAGGAGAGAAGCTCTGTGTCTGCAATGATAGTTGGCAAGgtgagtccttaacatggaatgtcaggtgtgctgcaatgctatcatgacga #### Atrnl1_ID12433_6 --> 2 - 2 Original Alignment gcCCAGATTGTTCTCTGAATGTCCCTTCTACTGAGTCTTACTGGATTTTGCCAAATGTTAAACCCTTCAGCCCTTCCGTAGGTCGGGCCTCACATAAAGCAGTTTTACATGGGAAATTCATGTGGGTGATTGGAGGATATACTTTTAACTACAGTTCTTTTCAAATGGTTCTGaa acgtttgctcatttcaaccttgcagcctactgacatgctgtgttttacaggcCCAGATTGTTCTTTGAATGTCCCTTCCACTGAGTCCTACTGGATCTTGCCAAATGTAAAAGGCTTCAGCCCTTCTGTGGGTCGGGCCTCTCATAAAGCGGTTCTACATGGGAAATTCATGTGGGTAATTGGGGGTTATACCTTCAACCATAGTTCCTTTCATATGATATTGaagtaagtatttcaactatagtttcctatcatatgattttgaagtggggatc Alignment from CESAR gcCCAGATTGTTCTCTGAATGTCCCTTCTACTGAGTCTTACTGGATTTTGCCAAATGTTAAACCCTTCAGCCCTTCCGTAGGTCGGGCCTCACATAAAGCAGTTTTACATGGGAAATTCATGTGGGTGATTGGAGGATATACTTTTAACTACAGTTCTTTTCAAATGGTTCTGaa acgtttgctcatttcaaccttgcagcctactgacatgctgtgttttacaggcCCAGATTGTTCTTTGAATGTCCCTTCCACTGAGTCCTACTGGATCTTGCCAAATGTAAAAGGCTTCAGCCCTTCTGTGGGTCGGGCCTCTCATAAAGCGGTTCTACATGGGAAATTCATGTGGGTAATTGGGGGTTATACCTTCAACCATAGTTCCTTTCATATGATATTGaagtaagtatttcaactatagtttcctatcatatgattttgaagtggggatc Alignment from Spaln_aa2Genome GCCCAGATTGTTCTCTGAATGTCCCTTCTACTGAGTCTTACTGGATTTTGCCAAATGTTAAACCCTTCAGCCCTTCCGTAGGTCGGGCCTCACATAAA acgtttgctcatttcaaccttgcagcctactgacatgctgtgttttacagGCCCAGATTGTTCTTTGAATGTCCCTTCCACTGAGTCCTACTGGATCTTGCCAAATGTAAAAGGCTTCAGCCCTTCTGTGGGTCGGGCCTCTCATAAAgcggttctacatgggaaattcatgtgggtaattgggggttataccttcaaccatagttcctttcatatgatattgaagtaagtatttcaactatagtttcctatcatatgattttgaagtggggatc Alignment from Spaln_nt2Genome GCCCAGATTGTTCTCTGAATGTCCCTTCTACTGAGTCTTACTGGATTTTGCCAAATGTTAAACCCTTCAGCCCTTCCGTAGGTCGGGCCTCACATAAAGCAGTTTTACATGGGAAATTCATGTGGGTGATTGGAGGATATACTTTTAACTACAGTTCTTTTCAAATGGTTCTGAA acgtttgctcatttcaaccttgcagcctactgacatgctgtgttttacagGCCCAGATTGTTCTTTGAATGTCCCTTCCACTGAGTCCTACTGGATCTTGCCAAATGTAAAAGGCTTCAGCCCTTCTGTGGGTCGGGCCTCTCATAAAGCGGTTCTACATGGGAAATTCATGTGGGTAATTGGGGGTTATACCTTCAACCATAGTTCCTTTCATATGATATTGAAgtaagtatttcaactatagtttcctatcatatgattttgaagtggggatc Alignment from Pairagon GCCCAGATTGTTCTCTGAATGTCCCTTCTACTGAGTCTTACTGGATTTTGCCAAATGTTAAACCCTTCAGCCCTTCCGTAGGTCGGGCCTCACATAAAGCAGTTTTACATGGGAAATTCATGTGGGTGATTGGAGGATATACTTTTAACTACAGTTCTTTTCAAATGGTTCTGAA acgtttgctcatttcaaccttgcagcctactgacatgctgtgttttacagGCCCAGATTGTTCTTTGAATGTCCCTTCCACTGAGTCCTACTGGATCTTGCCAAATGTAAAAGGCTTCAGCCCTTCTGTGGGTCGGGCCTCTCATAAAGCGGTTCTACATGGGAAATTCATGTGGGTAATTGGGGGTTATACCTTCAACCATAGTTCCTTTCATATGATATTGAAgtaagtatttcaactatagtttcctatcatatgattttgaagtggggatc Alignment from Exonerate_protein2genome GCCCAGATTGTTCTCTGAATGTCCCTTCTACTGAGTCTTACTGGATTTTGCCAAATGTTAAACCCTTCAGCCCTTCCGTAGGTCGGGCCTCACATAAAGCAGTTTTACATGGGAAATTCATGTGGGTGATTGGAGGATATACTTTTAACTACAGTTCTTTTCAAATGGTTCTGAA acgtttgctcatttcaaccttgcagcctactgacatgctgtgttttacagGCCCAGATTGTTCTTTGAATGTCCCTTCCACTGAGTCCTACTGGATCTTGCCAAATGTAAAAGGCTTCAGCCCTTCTGTGGGTCGGGCCTCTCATAAAGCGGTTCTACATGGGAAATTCATGTGGGTAATTGGGGGTTATACCTTCAACCATAGTTCCTTTCATATGATATTGAAgtaagtatttcaactatagtttcctatcatatgattttgaagtggggatc Alignment from Exonerate_coding2genome GCCCAGATTGTTCTCTGAATGTCCCTTCTACTGAGTCTTACTGGATTTTGCCAAATGTTAAACCCTTCAGCCCTTCCGTAGGTCGGGCCTCACATAAAGCAGTTTTACATGGGAAATTCATGTGGGTGATTGGAGGATATACTTTTAACTACAGTTCTTTTCAAATGGTTCTGAA acgtttgctcatttcaaccttgcagcctactgacatgctgtgttttacagGCCCAGATTGTTCTTTGAATGTCCCTTCCACTGAGTCCTACTGGATCTTGCCAAATGTAAAAGGCTTCAGCCCTTCTGTGGGTCGGGCCTCTCATAAAGCGGTTCTACATGGGAAATTCATGTGGGTAATTGGGGGTTATACCTTCAACCATAGTTCCTTTCATATGATATTGAAgtaagtatttcaactatagtttcctatcatatgattttgaagtggggatc Alignment from GeneWise GCCCAGATTGTTCTCTGAATGTCCCTTCTACTGAGTCTTACTGGATTTTGCCAAATGTTAAACCCTTCAGCCCTTCCGTAGGTCGGGCCTCACATAAAGCAGTTTTACATGGGAAATTCATGTGGGTGATTGGAGGATATACTTTTAACTACAGTTCTTTTCAAATGGTTCTGAA acgtttgctcatttcaaccttgcagcctactgacatgctgtgttttacagGCCCAGATTGTTCTTTGAATGTCCCTTCCACTGAGTCCTACTGGATCTTGCCAAATGTAAAAGGCTTCAGCCCTTCTGTGGGTCGGGCCTCTCATAAAGCGGTTCTACATGGGAAATTCATGTGGGTAATTGGGGGTTATACCTTCAACCATAGTTCCTTTCATATGATATTGAAgtaagtatttcaactatagtttcctatcatatgattttgaagtggggatc #### Atrnl1_ID12434_7 --> 1 - 0 Original Alignment tTACAATTTAGAAAGCAGTATATGGAATGTAGGTGCTGTATCAAGGGGCCCTCTTCAGAGATACGGACATTCTCTTGCCCTCTATCAG ctcaaaggaagaggcttttatgctcttgggtctgtttgtctctctattagtTACAATTTAGAAAGCAGTATATGGAATGTAGGCGCTGTATCAAGGGGACCTCTTCAGAGATACGGGCATTCTCTCGCCCTATACCAGgtagaattttttttcctgtcagccgggagacctcagtatacatatcttgc Alignment from CESAR tTACAATTTAGAAAGCAGTATATGGAATGTAGGTGCTGTATCAAGGGGCCCTCTTCAGAGATACGGACATTCTCTTGCCCTCTATCAG ctcaaaggaagaggcttttatgctcttgggtctgtttgtctctctattagtTACAATTTAGAAAGCAGTATATGGAATGTAGGCGCTGTATCAAGGGGACCTCTTCAGAGATACGGGCATTCTCTCGCCCTATACCAGgtagaattttttttcctgtcagccgggagacctcagtatacatatcttgc Alignment from Spaln_aa2Genome TTACAATTTAGAAAGCAGTATATGGAATGTAGGTGCTGTATCAAGGGGCCCTCTTCAGAGATACGGACATTCTCTTGCCCTCTATCAG ctcaaaggaagaggcttttatgctcttgggtctgtttgtctctctattagTTACAATTTAGAAAGCAGTATATGGAATGTAGGCGCTGTATCAAGGGGACCTCTTCAGAGATACGGGCATTCTCTCGCCCTATACCAGgtagaattttttttcctgtcagccgggagacctcagtatacatatcttgc Alignment from Spaln_nt2Genome TTACAATTTAGAAAGCAGTATATGGAATGTAGGTGCTGTATCAAGGGGCCCTCTTCAGAGATACGGACATTCTCTTGCCCTCTATCAG ctcaaaggaagaggcttttatgctcttgggtctgtttgtctctctattagTTACAATTTAGAAAGCAGTATATGGAATGTAGGCGCTGTATCAAGGGGACCTCTTCAGAGATACGGGCATTCTCTCGCCCTATACCAGgtagaattttttttcctgtcagccgggagacctcagtatacatatcttgc Alignment from Pairagon TTACAATTTAGAAAGCAGTATATGGAATGTAGGTGCTGTATCAAGGGGCCCTCTTCAGAGATACGGACATTCTCTTGCCCTCTATCAG ctcaaaggaagaggcttttatgctcttgggtctgtttgtctctctattagTTACAATTTAGAAAGCAGTATATGGAATGTAGGCGCTGTATCAAGGGGACCTCTTCAGAGATACGGGCATTCTCTCGCCCTATACCAGgtagaattttttttcctgtcagccgggagacctcagtatacatatcttgc Alignment from Exonerate_protein2genome TTACAATTTAGAAAGCAGTATATGGAATGTAGGTGCTGTATCAAGGGGCCCTCTTCAGAGATACGGACATTCTCTTGCCCTCTATCAG ctcaaaggaagaggcttttatgctcttgggtctgtttgtctctctattagTTACAATTTAGAAAGCAGTATATGGAATGTAGGCGCTGTATCAAGGGGACCTCTTCAGAGATACGGGCATTCTCTCGCCCTATACCAGgtagaattttttttcctgtcagccgggagacctcagtatacatatcttgc Alignment from Exonerate_coding2genome TTACAATTTAGAAAGCAGTATATGGAATGTAGGTGCTGTATCAAGGGGCCCTCTTCAGAGATACGGACATTCTCTTGCCCTCTATCAG ctcaaaggaagaggcttttatgctcttgggtctgtttgtctctctattagTTACAATTTAGAAAGCAGTATATGGAATGTAGGCGCTGTATCAAGGGGACCTCTTCAGAGATACGGGCATTCTCTCGCCCTATACCAGgtagaattttttttcctgtcagccgggagacctcagtatacatatcttgc Alignment from GeneWise TTACAATTTAGAAAGCAGTATATGGAATGTAGGTGCTGTATCAAGGGGCCCTCTTCAGAGATACGGACATTCTCTTGCCCTCTATCAG ctcaaaggaagaggcttttatgctcttgggtctgtttgtctctctattagTTACAATTTAGAAAGCAGTATATGGAATGTAGGCGCTGTATCAAGGGGACCTCTTCAGAGATACGGGCATTCTCTCGCCCTATACCAGgtagaattttttttcctgtcagccgggagacctcagtatacatatcttgc #### Atrnl1_ID12436_9 --> 2 - 2 Original Alignment ccTCAAACACTTGGCTAGTTCCAGAAACGAAAGGAGCCATTGTGCAAGGTGGATATGGCCACACAAGTGTGTATGACGAAGTGACCAAGTCCATCTATGTTCACGGAGGCTACAAAGCATTGCCTGGCAATAAGTACGGGCTGGTGGACGACCTCTATAAGTACGAAGTCAACACCAGGACTtg tacttggtggtctgtacacgcacattatcagtctctctgccccactccagccTCCAACACTTGGCTAGTTCCAGAAACTAAAGGAGCCATTGTGCAAGGTGGATATGGCCATACTAGTGTGTATGATGAAGTTACCAAGTCCATTTATGTACATGGGGGCTACAAAGCATTGCCGGGCAATAAGTGTGGGCTGGTGGATGAGCTCTATAAGTATAAAGTCAACTCCAGAACTtggtatgccagcctggtattagaacttaaggctgtgtctgtacacaggcttc Alignment from CESAR ccTCAAACACTTGGCTAGTTCCAGAAACGAAAGGAGCCATTGTGCAAGGTGGATATGGCCACACAAGTGTGTATGACGAAGTGACCAAGTCCATCTATGTTCACGGAGGCTACAAAGCATTGCCTGGCAATAAGTACGGGCTGGTGGACGACCTCTATAAGTACGAAGTCAACACCAGGACTtg tacttggtggtctgtacacgcacattatcagtctctctgccccactccagccTCCAACACTTGGCTAGTTCCAGAAACTAAAGGAGCCATTGTGCAAGGTGGATATGGCCATACTAGTGTGTATGATGAAGTTACCAAGTCCATTTATGTACATGGGGGCTACAAAGCATTGCCGGGCAATAAGTGTGGGCTGGTGGATGAGCTCTATAAGTATAAAGTCAACTCCAGAACTtggtatgccagcctggtattagaacttaaggctgtgtctgtacacaggcttc Alignment from Spaln_aa2Genome CCTCAAACACTTGGCTAGTTCCAGAAACGAAAGGAGCCATTGTGCAAGGTGGATATGGCCACACAAGTGTGTATGACGAAGTGACCAAGTCCATCTATGTTCACGGAGGCTACAAAGCATTGCCTGGCAATAAGTACGGGCTGGTGGACGACCTCTATAAGTACGAAGTCAACACCAGGACTTG tacttggtggtctgtacacgcacattatcagtctctctgccccactccagCCTCCAACACTTGGCTAGTTCCAGAAACTAAAGGAGCCATTGTGCAAGGTGGATATGGCCATACTAGTGTGTATGATGAAGTTACCAAGTCCATTTATGTACATGGGGGCTACAAAGCATTGCCGGGCAATAAGTGTGGGCTGGTGGATGAGCTCTATAAGTATAAAGTCAACTCCAGAACTTGgtatgccagcctggtattagaacttaaggctgtgtctgtacacaggcttc Alignment from Spaln_nt2Genome CCTCAAACACTTGGCTAGTTCCAGAAACGAAAGGAGCCATTGTGCAAGGTGGATATGGCCACACAAGTGTGTATGACGAAGTGACCAAGTCCATCTATGTTCACGGAGGCTACAAAGCATTGCCTGGCAATAAGTACGGGCTGGTGGACGACCTCTATAAGTACGAAGTCAACACCAGGACTTG tacttggtggtctgtacacgcacattatcagtctctctgccccactccagCCTCCAACACTTGGCTAGTTCCAGAAACTAAAGGAGCCATTGTGCAAGGTGGATATGGCCATACTAGTGTGTATGATGAAGTTACCAAGTCCATTTATGTACATGGGGGCTACAAAGCATTGCCGGGCAATAAGTGTGGGCTGGTGGATGAGCTCTATAAGTATAAAGTCAACTCCAGAACTTGgtatgccagcctggtattagaacttaaggctgtgtctgtacacaggcttc Alignment from Pairagon CCTCAAACACTTGGCTAGTTCCAGAAACGAAAGGAGCCATTGTGCAAGGTGGATATGGCCACACAAGTGTGTATGACGAAGTGACCAAGTCCATCTATGTTCACGGAGGCTACAAAGCATTGCCTGGCAATAAGTACGGGCTGGTGGACGACCTCTATAAGTACGAAGTCAACACCAGGACTTG tacttggtggtctgtacacgcacattatcagtctctctgccccactccagCCTCCAACACTTGGCTAGTTCCAGAAACTAAAGGAGCCATTGTGCAAGGTGGATATGGCCATACTAGTGTGTATGATGAAGTTACCAAGTCCATTTATGTACATGGGGGCTACAAAGCATTGCCGGGCAATAAGTGTGGGCTGGTGGATGAGCTCTATAAGTATAAAGTCAACTCCAGAACTTGgtatgccagcctggtattagaacttaaggctgtgtctgtacacaggcttc Alignment from Exonerate_protein2genome CCTCAAACACTTGGCTAGTTCCAGAAACGAAAGGAGCCATTGTGCAAGGTGGATATGGCCACACAAGTGTGTATGACGAAGTGACCAAGTCCATCTATGTTCACGGAGGCTACAAAGCATTGCCTGGCAATAAGTACGGGCTGGTGGACGACCTCTATAAGTACGAAGTCAACACCAGGACTTG tacttggtggtctgtacacgcacattatcagtctctctgccccactccagCCTCCAACACTTGGCTAGTTCCAGAAACTAAAGGAGCCATTGTGCAAGGTGGATATGGCCATACTAGTGTGTATGATGAAGTTACCAAGTCCATTTATGTACATGGGGGCTACAAAGCATTGCCGGGCAATAAGTGTGGGCTGGTGGATGAGCTCTATAAGTATAAAGTCAACTCCAGAACTTGgtatgccagcctggtattagaacttaaggctgtgtctgtacacaggcttc Alignment from Exonerate_coding2genome CCTCAAACACTTGGCTAGTTCCAGAAACGAAAGGAGCCATTGTGCAAGGTGGATATGGCCACACAAGTGTGTATGACGAAGTGACCAAGTCCATCTATGTTCACGGAGGCTACAAAGCATTGCCTGGCAATAAGTACGGGCTGGTGGACGACCTCTATAAGTACGAAGTCAACACCAGGACTTG tacttggtggtctgtacacgcacattatcagtctctctgccccactccagCCTCCAACACTTGGCTAGTTCCAGAAACTAAAGGAGCCATTGTGCAAGGTGGATATGGCCATACTAGTGTGTATGATGAAGTTACCAAGTCCATTTATGTACATGGGGGCTACAAAGCATTGCCGGGCAATAAGTGTGGGCTGGTGGATGAGCTCTATAAGTATAAAGTCAACTCCAGAACTTGgtatgccagcctggtattagaacttaaggctgtgtctgtacacaggcttc Alignment from GeneWise CCTCAAACACTTGGCTAGTTCCAGAAACGAAAGGAGCCATTGTGCAAGGTGGATATGGCCACACAAGTGTGTATGACGAAGTGACCAAGTCCATCTATGTTCACGGAGGCTACAAAGCATTGCCTGGCAATAAGTACGGGCTGGTGGACGACCTCTATAAGTACGAAGTCAACACCAGGACTTG tacttggtggtctgtacacgcacattatcagtctctctgccccactccagCCTCCAACACTTGGCTAGTTCCAGAAACTAAAGGAGCCATTGTGCAAGGTGGATATGGCCATACTAGTGTGTATGATGAAGTTACCAAGTCCATTTATGTACATGGGGGCTACAAAGCATTGCCGGGCAATAAGTGTGGGCTGGTGGATGAGCTCTATAAGTATAAAGTCAACTCCAGAACTTGgtatgccagcctggtattagaacttaaggctgtgtctgtacacaggcttc #### Atrnl1_ID12437_10 --> 1 - 1 Original Alignment gACTATTTTGAAAGAAAGTGGGTTTGCCAGATACCTTCACTCAGCTGTTCTTATCAATGGAGCTATGCTTATTTTTGGAGGAAATACCCATAATGATACTTCCCTGAGTAACGGTGCAAAATGTTTTTCTGCCGATTTCCTGGCATATGACATAg tagacactactctcagtccttagagtcattctatcttttttatctttcaggACTATTCTGAAAGAAAGTGGGTTCGCTAGATTCCTTCACTCTACTGTTCTTATCAATGGGGCCATGCTTATTTTTGGGGGAAACACCCATAATGATACGTCTTTAAGCAATGGTGCAAAATGTTTTTCAGCTGACTTTCTTGCCTATGACATAggtatggatccatgtatagagttatactggtttagttatataccaatcagc Alignment from CESAR gACTATTTTGAAAGAAAGTGGGTTTGCCAGATACCTTCACTCAGCTGTTCTTATCAATGGAGCTATGCTTATTTTTGGAGGAAATACCCATAATGATACTTCCCTGAGTAACGGTGCAAAATGTTTTTCTGCCGATTTCCTGGCATATGACATAg tagacactactctcagtccttagagtcattctatcttttttatctttcaggACTATTCTGAAAGAAAGTGGGTTCGCTAGATTCCTTCACTCTACTGTTCTTATCAATGGGGCCATGCTTATTTTTGGGGGAAACACCCATAATGATACGTCTTTAAGCAATGGTGCAAAATGTTTTTCAGCTGACTTTCTTGCCTATGACATAggtatggatccatgtatagagttatactggtttagttatataccaatcagc Alignment from Spaln_aa2Genome GACTATTTTGAAAGAAAGTGGGTTTGCCAGATACCTTCACTCAGCTGTTCTTATCAATGGAGCTATGCTTATTTTTGGAGGAAATACCCATAATGATACTTCCCTGAGTAACGGTGCAAAATGTTTTTCTGCCGATTTCCTGGCATATGACATAG tagacactactctcagtccttagagtcattctatcttttttatctttcagGACTATTCTGAAAGAAAGTGGGTTCGCTAGATTCCTTCACTCTACTGTTCTTATCAATGGGGCCATGCTTATTTTTGGGGGAAACACCCATAATGATACGTCTTTAAGCAATGGTGCAAAATGTTTTTCAGCTGACTTTCTTGCCTATGACATAGgtatggatccatgtatagagttatactggtttagttatataccaatcagc Alignment from Spaln_nt2Genome GACTATTTTGAAAGAAAGTGGGTTTGCCAGATACCTTCACTCAGCTGTTCTTATCAATGGAGCTATGCTTATTTTTGGAGGAAATACCCATAATGATACTTCCCTGAGTAACGGTGCAAAATGTTTTTCTGCCGATTTCCTGGCATATGACATAG tagacactactctcagtccttagagtcattctatcttttttatctttcagGACTATTCTGAAAGAAAGTGGGTTCGCTAGATTCCTTCACTCTACTGTTCTTATCAATGGGGCCATGCTTATTTTTGGGGGAAACACCCATAATGATACGTCTTTAAGCAATGGTGCAAAATGTTTTTCAGCTGACTTTCTTGCCTATGACATAGgtatggatccatgtatagagttatactggtttagttatataccaatcagc Alignment from Pairagon GACTATTTTGAAAGAAAGTGGGTTTGCCAGATACCTTCACTCAGCTGTTCTTATCAATGGAGCTATGCTTATTTTTGGAGGAAATACCCATAATGATACTTCCCTGAGTAACGGTGCAAAATGTTTTTCTGCCGATTTCCTGGCATATGACATAG tagacactactctcagtccttagagtcattctatcttttttatctttcagGACTATTCTGAAAGAAAGTGGGTTCGCTAGATTCCTTCACTCTACTGTTCTTATCAATGGGGCCATGCTTATTTTTGGGGGAAACACCCATAATGATACGTCTTTAAGCAATGGTGCAAAATGTTTTTCAGCTGACTTTCTTGCCTATGACATAGgtatggatccatgtatagagttatactggtttagttatataccaatcagc Alignment from Exonerate_protein2genome GACTATTTTGAAAGAAAGTGGGTTTGCCAGATACCTTCACTCAGCTGTTCTTATCAATGGAGCTATGCTTATTTTTGGAGGAAATACCCATAATGATACTTCCCTGAGTAACGGTGCAAAATGTTTTTCTGCCGATTTCCTGGCATATGACATAG tagacactactctcagtccttagagtcattctatcttttttatctttcagGACTATTCTGAAAGAAAGTGGGTTCGCTAGATTCCTTCACTCTACTGTTCTTATCAATGGGGCCATGCTTATTTTTGGGGGAAACACCCATAATGATACGTCTTTAAGCAATGGTGCAAAATGTTTTTCAGCTGACTTTCTTGCCTATGACATAGgtatggatccatgtatagagttatactggtttagttatataccaatcagc Alignment from Exonerate_coding2genome GACTATTTTGAAAGAAAGTGGGTTTGCCAGATACCTTCACTCAGCTGTTCTTATCAATGGAGCTATGCTTATTTTTGGAGGAAATACCCATAATGATACTTCCCTGAGTAACGGTGCAAAATGTTTTTCTGCCGATTTCCTGGCATATGACATAG tagacactactctcagtccttagagtcattctatcttttttatctttcagGACTATTCTGAAAGAAAGTGGGTTCGCTAGATTCCTTCACTCTACTGTTCTTATCAATGGGGCCATGCTTATTTTTGGGGGAAACACCCATAATGATACGTCTTTAAGCAATGGTGCAAAATGTTTTTCAGCTGACTTTCTTGCCTATGACATAGgtatggatccatgtatagagttatactggtttagttatataccaatcagc Alignment from GeneWise GACTATTTTGAAAGAAAGTGGGTTTGCCAGATACCTTCACTCAGCTGTTCTTATCAATGGAGCTATGCTTATTTTTGGAGGAAATACCCATAATGATACTTCCCTGAGTAACGGTGCAAAATGTTTTTCTGCCGATTTCCTGGCATATGACATAG tagacactactctcagtccttagagtcattctatcttttttatctttcagGACTATTCTGAAAGAAAGTGGGTTCGCTAGATTCCTTCACTCTACTGTTCTTATCAATGGGGCCATGCTTATTTTTGGGGGAAACACCCATAATGATACGTCTTTAAGCAATGGTGCAAAATGTTTTTCAGCTGACTTTCTTGCCTATGACATAGgtatggatccatgtatagagttatactggtttagttatataccaatcagc #### Atrnl1_ID12442_14 --> 0 - 1 Original Alignment TCTGTCAGAAACTACACTAAATGTCATATAAGAAATGAGCAGATTTGTAACAAACTTACAAGCTGTAAAAGCTGTTCACTCAACTTGAATTGCCAGTGGGATCAGCGGCAGCAGGAATGTCAGGCTTTGCCAg ccaattctaaataagtgtttcgtcttatctgccatcatgcgctttgaaagTCCATCAGGAATTACACTAAGTGTCATATAAGAAATGAACAGATTTGTAACAAACTTACAGGCTGTAGGGGCTGTTCGCTAAACCTGAATTGTCAGTGGGATCAACAGCAGCAGGAATGTCAGGCTTTACCAggtaagttaggaagtgtattcgcttgatgtgaaaatcacatccaacttggg Alignment from CESAR TCTGTCAGAAACTACACTAAATGTCATATAAGAAATGAGCAGATTTGTAACAAACTTACAAGCTGTAAAAGCTGTTCACTCAACTTGAATTGCCAGTGGGATCAGCGGCAGCAGGAATGTCAGGCTTTGCCAg ccaattctaaataagtgtttcgtcttatctgccatcatgcgctttgaaagTCCATCAGGAATTACACTAAGTGTCATATAAGAAATGAACAGATTTGTAACAAACTTACAGGCTGTAGGGGCTGTTCGCTAAACCTGAATTGTCAGTGGGATCAACAGCAGCAGGAATGTCAGGCTTTACCAggtaagttaggaagtgtattcgcttgatgtgaaaatcacatccaacttggg Alignment from Spaln_aa2Genome TCTGTCAGAAACTACACTAAATGTCATATAAGAAATGAGCAGATTTGTAACAAACTTACAAGCTGTAAAAGCTGTTCACTCAACTTGAATTGCCAGTGGGATCAGCGGCAGCAGGAATGTCAGGCTTTGCCAG ccaattctaaataagtgtttcgtcttatctgccatcatgcgctttgaaagTCCATCAGGAATTACACTAAGTGTCATATAAGAAATGAACAGATTTGTAACAAACTTACAGGCTGTAGGGGCTGTTCGCTAAACCTGAATTGTCAGTGGGATCAACAGCAGCAGGAATGTCAGGCTTTACCAGgtaagttaggaagtgtattcgcttgatgtgaaaatcacatccaacttggg Alignment from Spaln_nt2Genome TCTGTCAGAAACTACACTAAATGTCATATAAGAAATGAGCAGATTTGTAACAAACTTACAAGCTGTAAAAGCTGTTCACTCAACTTGAATTGCCAGTGGGATCAGCGGCAGCAGGAATGTCAGGCTTTGCCAG ccaattctaaataagtgtttcgtcttatctgccatcatgcgctttgaaagTCCATCAGGAATTACACTAAGTGTCATATAAGAAATGAACAGATTTGTAACAAACTTACAGGCTGTAGGGGCTGTTCGCTAAACCTGAATTGTCAGTGGGATCAACAGCAGCAGGAATGTCAGGCTTTACCAGgtaagttaggaagtgtattcgcttgatgtgaaaatcacatccaacttggg Alignment from Pairagon TCTGTCAGAAACTACACTAAATGTCATATAAGAAATGAGCAGATTTGTAACAAACTTACAAGCTGTAAAAGCTGTTCACTCAACTTGAATTGCCAGTGGGATCAGCGGCAGCAGGAATGTCAGGCTTTGCCAG ccaattctaaataagtgtttcgtcttatctgccatcatgcgctttgaaagTCCATCAGGAATTACACTAAGTGTCATATAAGAAATGAACAGATTTGTAACAAACTTACAGGCTGTAGGGGCTGTTCGCTAAACCTGAATTGTCAGTGGGATCAACAGCAGCAGGAATGTCAGGCTTTACCAGgtaagttaggaagtgtattcgcttgatgtgaaaatcacatccaacttggg Alignment from Exonerate_protein2genome TCTGTCAGAAACTACACTAAATGTCATATAAGAAATGAGCAGATTTGTAACAAACTTACAAGCTGTAAAAGCTGTTCACTCAACTTGAATTGCCAGTGGGATCAGCGGCAGCAGGAATGTCAGGCTTTGCCAG ccaattctaaataagtgtttcgtcttatctgccatcatgcgctttgaaagTCCATCAGGAATTACACTAAGTGTCATATAAGAAATGAACAGATTTGTAACAAACTTACAGGCTGTAGGGGCTGTTCGCTAAACCTGAATTGTCAGTGGGATCAACAGCAGCAGGAATGTCAGGCTTTACCAGgtaagttaggaagtgtattcgcttgatgtgaaaatcacatccaacttggg Alignment from Exonerate_coding2genome TCTGTCAGAAACTACACTAAATGTCATATAAGAAATGAGCAGATTTGTAACAAACTTACAAGCTGTAAAAGCTGTTCACTCAACTTGAATTGCCAGTGGGATCAGCGGCAGCAGGAATGTCAGGCTTTGCCAG ccaattctaaataagtgtttcgtcttatctgccatcatgcgctttgaaagTCCATCAGGAATTACACTAAGTGTCATATAAGAAATGAACAGATTTGTAACAAACTTACAGGCTGTAGGGGCTGTTCGCTAAACCTGAATTGTCAGTGGGATCAACAGCAGCAGGAATGTCAGGCTTTACCAGgtaagttaggaagtgtattcgcttgatgtgaaaatcacatccaacttggg Alignment from GeneWise TCTGTCAGAAACTACACTAAATGTCATATAAGAAATGAGCAGATTTGTAACAAACTTACAAGCTGTAAAAGCTGTTCACTCAACTTGAATTGCCAGTGGGATCAGCGGCAGCAGGAATGTCAGGCTTTGCCAG ccaattctaaataagtgtttcgtcttatctgccatcatgcgctttgaaagTCCATCAGGAATTACACTAAGTGTCATATAAGAAATGAACAGATTTGTAACAAACTTACAGGCTGTAGGGGCTGTTCGCTAAACCTGAATTGTCAGTGGGATCAACAGCAGCAGGAATGTCAGGCTTTACCAGgtaagttaggaagtgtattcgcttgatgtgaaaatcacatccaacttggg #### Atrnl1_ID12443_15 --> 2 - 0 Original Alignment ctCACCTTTGTGGAGAAGGCTGGAATCATGTTGGGGACGCTTGTCTTCGAATCAATTCCAGTCGAGAAAGCTATGATAATGCCAAACTTTATTGCTATAACCTCAGTGGAAATCTCGCCTCCCTGACCACGTCCAAGGAGGTGGAGTTTGTGTTGGATGAAATACAGAAGTTCACACAGCAG atgcagctccaaaggtgtttgggttaacctctgtccttgtcgttttacagctCATCTTTGTGGAGAAGGCTGGAATCATGTCGGAGACGCTTGTCATCGAATAAATTCTAGTCGAGAAAGCTATGATAATGCCAAACTTTATTGTTATAACCTCAGTGGGAATCCTGCCTCCTTAACCACCTCCAAGGAGGTGGAGTTTGTGTTGGATGAAATACAGAAGTTCACACAGCAGgtaggaacatggacactacatttagagagtagtatcaccttcagggctgg Alignment from CESAR ctCACCTTTGTGGAGAAGGCTGGAATCATGTTGGGGACGCTTGTCTTCGAATCAATTCCAGTCGAGAAAGCTATGATAATGCCAAACTTTATTGCTATAACCTCAGTGGAAATCTCGCCTCCCTGACCACGTCCAAGGAGGTGGAGTTTGTGTTGGATGAAATACAGAAGTTCACACAGCAG atgcagctccaaaggtgtttgggttaacctctgtccttgtcgttttacagctCATCTTTGTGGAGAAGGCTGGAATCATGTCGGAGACGCTTGTCATCGAATAAATTCTAGTCGAGAAAGCTATGATAATGCCAAACTTTATTGTTATAACCTCAGTGGGAATCCTGCCTCCTTAACCACCTCCAAGGAGGTGGAGTTTGTGTTGGATGAAATACAGAAGTTCACACAGCAGgtaggaacatggacactacatttagagagtagtatcaccttcagggctgg Alignment from Spaln_aa2Genome CTCACCTTTGTGGAGAAGGCTGGAATCATGTTGGGGACGCTTGTCTTCGAATCAATTCCAGTCGAGAAAGCTATGATAATGCCAAACTTTATTGCTATAACCTCAGTGGAAATCTCGCCTCCCTGACCACGTCCAAGGAGGTGGAGTTTGTGTTGGATGAAATACAGAAGTTCACACAGCAG atgcagctccaaaggtgtttgggttaacctctgtccttgtcgttttacagCTCATCTTTGTGGAGAAGGCTGGAATCATGTCGGAGACGCTTGTCATCGAATAAATTCTAGTCGAGAAAGCTATGATAATGCCAAACTTTATTGTTATAACCTCAGTGGGAATCCTGCCTCCTTAACCACCTCCAAGGAGGTGGAGTTTGTGTTGGATGAAATACAGAAGTTCACACAGCAGgtaggaacatggacactacatttagagagtagtatcaccttcagggctgg Alignment from Spaln_nt2Genome CTCACCTTTGTGGAGAAGGCTGGAATCATGTTGGGGACGCTTGTCTTCGAATCAATTCCAGTCGAGAAAGCTATGATAATGCCAAACTTTATTGCTATAACCTCAGTGGAAATCTCGCCTCCCTGACCACGTCCAAGGAGGTGGAGTTTGTGTTGGATGAAATACAGAAGTTCACACAGCAG atgcagctccaaaggtgtttgggttaacctctgtccttgtcgttttacagCTCATCTTTGTGGAGAAGGCTGGAATCATGTCGGAGACGCTTGTCATCGAATAAATTCTAGTCGAGAAAGCTATGATAATGCCAAACTTTATTGTTATAACCTCAGTGGGAATCCTGCCTCCTTAACCACCTCCAAGGAGGTGGAGTTTGTGTTGGATGAAATACAGAAGTTCACACAGCAGgtaggaacatggacactacatttagagagtagtatcaccttcagggctgg Alignment from Pairagon CTCACCTTTGTGGAGAAGGCTGGAATCATGTTGGGGACGCTTGTCTTCGAATCAATTCCAGTCGAGAAAGCTATGATAATGCCAAACTTTATTGCTATAACCTCAGTGGAAATCTCGCCTCCCTGACCACGTCCAAGGAGGTGGAGTTTGTGTTGGATGAAATACAGAAGTTCACACAGCAG atgcagctccaaaggtgtttgggttaacctctgtccttgtcgttttacagCTCATCTTTGTGGAGAAGGCTGGAATCATGTCGGAGACGCTTGTCATCGAATAAATTCTAGTCGAGAAAGCTATGATAATGCCAAACTTTATTGTTATAACCTCAGTGGGAATCCTGCCTCCTTAACCACCTCCAAGGAGGTGGAGTTTGTGTTGGATGAAATACAGAAGTTCACACAGCAGgtaggaacatggacactacatttagagagtagtatcaccttcagggctgg Alignment from Exonerate_protein2genome CTCACCTTTGTGGAGAAGGCTGGAATCATGTTGGGGACGCTTGTCTTCGAATCAATTCCAGTCGAGAAAGCTATGATAATGCCAAACTTTATTGCTATAACCTCAGTGGAAATCTCGCCTCCCTGACCACGTCCAAGGAGGTGGAGTTTGTGTTGGATGAAATACAGAAGTTCACACAGCAG atgcagctccaaaggtgtttgggttaacctctgtccttgtcgttttacagCTCATCTTTGTGGAGAAGGCTGGAATCATGTCGGAGACGCTTGTCATCGAATAAATTCTAGTCGAGAAAGCTATGATAATGCCAAACTTTATTGTTATAACCTCAGTGGGAATCCTGCCTCCTTAACCACCTCCAAGGAGGTGGAGTTTGTGTTGGATGAAATACAGAAGTTCACACAGCAGgtaggaacatggacactacatttagagagtagtatcaccttcagggctgg Alignment from Exonerate_coding2genome CTCACCTTTGTGGAGAAGGCTGGAATCATGTTGGGGACGCTTGTCTTCGAATCAATTCCAGTCGAGAAAGCTATGATAATGCCAAACTTTATTGCTATAACCTCAGTGGAAATCTCGCCTCCCTGACCACGTCCAAGGAGGTGGAGTTTGTGTTGGATGAAATACAGAAGTTCACACAGCAG atgcagctccaaaggtgtttgggttaacctctgtccttgtcgttttacagCTCATCTTTGTGGAGAAGGCTGGAATCATGTCGGAGACGCTTGTCATCGAATAAATTCTAGTCGAGAAAGCTATGATAATGCCAAACTTTATTGTTATAACCTCAGTGGGAATCCTGCCTCCTTAACCACCTCCAAGGAGGTGGAGTTTGTGTTGGATGAAATACAGAAGTTCACACAGCAGgtaggaacatggacactacatttagagagtagtatcaccttcagggctgg Alignment from GeneWise CTCACCTTTGTGGAGAAGGCTGGAATCATGTTGGGGACGCTTGTCTTCGAATCAATTCCAGTCGAGAAAGCTATGATAATGCCAAACTTTATTGCTATAACCTCAGTGGAAATCTCGCCTCCCTGACCACGTCCAAGGAGGTGGAGTTTGTGTTGGATGAAATACAGAAGTTCACACAGCAG atgcagctccaaaggtgtttgggttaacctctgtccttgtcgttttacagCTCATCTTTGTGGAGAAGGCTGGAATCATGTCGGAGACGCTTGTCATCGAATAAATTCTAGTCGAGAAAGCTATGATAATGCCAAACTTTATTGTTATAACCTCAGTGGGAATCCTGCCTCCTTAACCACCTCCAAGGAGGTGGAGTTTGTGTTGGATGAAATACAGAAGTTCACACAGCAGgtaggaacatggacactacatttagagagtagtatcaccttcagggctgg #### Atrnl1_ID12449_19 --> 2 - 1 Original Alignment ctTGCCAGTGTAATGGACACAGCACGTGCATCAACAACAACGTCTGTGAGCAGTGTAAGAATCTCACCACTGGGCGACAGTGTCAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAACGGTGGGCAGTGCACAg agcccttaagggtgaaacaactgaggtaatgtgggtcttattctttgcagctTGCCAATGTAATGAACACAGCACATGCATTAATAACAATGTCTGGGAGCAGTGTAAGAATCTGACATCTGGGCAACAGTGTGAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAATGGTAGCCAATGCAGAggtagccactttaagttcccttaattttggtgatgtactcaagttatgatg Alignment from CESAR ctTGCCAGTGTAATGGACACAGCACGTGCATCAACAACAACGTCTGTGAGCAGTGTAAGAATCTCACCACTGGGCGACAGTGTCAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAACGGTGGGCAGTGCACAg agcccttaagggtgaaacaactgaggtaatgtgggtcttattctttgcagctTGCCAATGTAATGAACACAGCACATGCATTAATAACAATGTCTGGGAGCAGTGTAAGAATCTGACATCTGGGCAACAGTGTGAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAATGGTAGCCAATGCAGAggtagccactttaagttcccttaattttggtgatgtactcaagttatgatg Alignment from Spaln_aa2Genome CTTGCCAGTGTAATGGACACAGCACGTGCATCAACAACAACGTCTGTGAGCAGTGTAAGAATCTCACCACTGGGCGACAGTGTCAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAACGGTGGGCAGTGCACAG agcccttaagggtgaaacaactgaggtaatgtgggtcttattctttgcagCTTGCCAATGTAATGAACACAGCACATGCATTAATAACAATGTCTGGGAGCAGTGTAAGAATCTGACATCTGGGCAACAGTGTGAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAATGGTAGCCAATGCAGAGgtagccactttaagttcccttaattttggtgatgtactcaagttatgatg Alignment from Spaln_nt2Genome CTTGCCAGTGTAATGGACACAGCACGTGCATCAACAACAACGTCTGTGAGCAGTGTAAGAATCTCACCACTGGGCGACAGTGTCAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAACGGTGGGCAGTGCACAG agcccttaagggtgaaacaactgaggtaatgtgggtcttattctttgcagCTTGCCAATGTAATGAACACAGCACATGCATTAATAACAATGTCTGGGAGCAGTGTAAGAATCTGACATCTGGGCAACAGTGTGAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAATGGTAGCCAATGCAGAGgtagccactttaagttcccttaattttggtgatgtactcaagttatgatg Alignment from Pairagon CTTGCCAGTGTAATGGACACAGCACGTGCATCAACAACAACGTCTGTGAGCAGTGTAAGAATCTCACCACTGGGCGACAGTGTCAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAACGGTGGGCAGTGCACAG agcccttaagggtgaaacaactgaggtaatgtgggtcttattctttgcagCTTGCCAATGTAATGAACACAGCACATGCATTAATAACAATGTCTGGGAGCAGTGTAAGAATCTGACATCTGGGCAACAGTGTGAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAATGGTAGCCAATGCAGAGgtagccactttaagttcccttaattttggtgatgtactcaagttatgatg Alignment from Exonerate_protein2genome CTTGCCAGTGTAATGGACACAGCACGTGCATCAACAACAACGTCTGTGAGCAGTGTAAGAATCTCACCACTGGGCGACAGTGTCAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAACGGTGGGCAGTGCACAG agcccttaagggtgaaacaactgaggtaatgtgggtcttattctttgcagCTTGCCAATGTAATGAACACAGCACATGCATTAATAACAATGTCTGGGAGCAGTGTAAGAATCTGACATCTGGGCAACAGTGTGAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAATGGTAGCCAATGCAGAGgtagccactttaagttcccttaattttggtgatgtactcaagttatgatg Alignment from Exonerate_coding2genome agcccttaagggtgaaacaactgaggtaatgtgggtcttattctttgcagcttgccaatgtaatgaacacagcacatgcattaataacaatgtctgggagcagtgtaagaatctgacatctgggcaacagtgtgaggaatgcatgccagggtactatggagacccaaccaatggtagccaatgcagaggtagccactttaagttcccttaattttggtgatgtactcaagttatgatg Alignment from GeneWise CTTGCCAGTGTAATGGACACAGCACGTGCATCAACAACAACGTCTGTGAGCAGTGTAAGAATCTCACCACTGGGCGACAGTGTCAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAACGGTGGGCAGTGCACAG agcccttaagggtgaaacaactgaggtaatgtgggtcttattctttgcagCTTGCCAATGTAATGAACACAGCACATGCATTAATAACAATGTCTGGGAGCAGTGTAAGAATCTGACATCTGGGCAACAGTGTGAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAATGGTAGCCAATGCAGAGgtagccactttaagttcccttaattttggtgatgtactcaagttatgatg #### Atrnl1_ID12461_26 --> 1 - 0 Original Alignment tTGTTTTTTATCTTTACTGCTGGTGGCTGCTGTGGTCTGGAAGATCAAACAAACTTGCTGGGCTTCTCGTCGGAGGGAG taaaagagaatctatatgtggtggtctttgcatttcaatgtcgtcctcagtTGTTTTGTATTGTTACTTCTGGTAGATGCCGCAGTTTGG---ATCAAAGAAACTTGTTGGCCATCCCATCAGAGAGACgtgagttgaaaccatagtaaaaggtctttttgatgataaatagttgtgct Alignment from CESAR tTGTTTTTTATCTTTACTGCTGGTGGCTGCTGTGGTCTGGAAGATCAAACAAACTTGCTGGGCTTCTCGTCGGAGGGAG taaaagagaatctatatgtggtggtctttgcatttcaatgtcgtcctcagtTGTTTTGTATTGTTACTTCTGGTAGATGCCGCAGTTTGG---ATCAAAGAAACTTGTTGGCCATCCCATCAGAGAGACgtgagttgaaaccatagtaaaaggtctttttgatgataaatagttgtgct Alignment from Spaln_aa2Genome TTGTTTTTTATCTTTACTGCTGGTGGCTGCTGTGGTCTGGAAGATCAAACAAACTTGCTGGGCTTCTCGTCGGAGGGAG taaaagagaatctatatgtggtggtctttgcatttcaatgtcgtcctcagTTGTTTTGTATTGTTACTTCTGGTAGATGCCGCAGTTTGG---ATCAAAGAAACTTGTTGGCCATCCCATCAGAGAGACgtgagttgaaaccatagtaaaaggtctttttgatgataaatagttgtgct Alignment from Spaln_nt2Genome TTGTTTTTTATCTTTACTGCTGGTGGCTGCTGTGGTCTGGAAGATCAAACAAACTTGCTGGGCTTCTCGTCGGAGGGAG taaaagagaatctatatgtggtggtctttgcatttcaatgtcgtcctcagTTGTTTTGTATTGTTACTTCTGGTAGATGCCGCAGTTTG---GATCAAAGAAACTTGTTGGCCATCCCATCAGAGAGACgtgagttgaaaccatagtaaaaggtctttttgatgataaatagttgtgct Alignment from Pairagon TTGTTTTTTATCTTTACTGCTGGTGGCTGCTGTGGTCTGGAAGATCAAACAAACTTGCTGGGCTTCTCGTCGGAGGGAG taaaagagaatctatatgtggtggtctttgcatttcaatgtcgtcctcagTTGTTTTGTATTGTTACTTCTGGTAGATGCCGCAGTTTG---GATCAAAGAAACTTGTTGGCCATCCCATCAGAGAGACgtgagttgaaaccatagtaaaaggtctttttgatgataaatagttgtgct Alignment from Exonerate_protein2genome TTGTTTTTTATCTTTACTGCTGGTGGCTGCTGTGGTCTGGAAGATCAAACAAACTTGCTGGGCTTCTCGTCGGAGGGAG taaaagagaatctatatgtggtggtctttgcatttcaatgtcgtcctcagTTGTTTTGTATTGTTACTTCTGGTAGATGCCGCAGTTTGG---ATCAAAGAAACTTGTTGGCCATCCCATCAGAGAGACgtgagttgaaaccatagtaaaaggtctttttgatgataaatagttgtgct Alignment from Exonerate_coding2genome taaaagagaatctatatgtggtggtctttgcatttcaatgtcgtcctcagttgttttgtattgttacttctggtagatgccgcagtttggatcaaagaaacttgttggccatcccatcagagagacgtgagttgaaaccatagtaaaaggtctttttgatgataaatagttgtgct Alignment from GeneWise TTGTTTTTTATCTTTACTGCTGGTGGCTGCTGTGGTCTGGAAGATCAAACAAACTTGCTGGGCTTCTCGTCGGAGGGAG taaaagagaatctatatgtggtggtctttgcatttcaatgtcgtcctcagTTGTTTTGTATTGTTACTTCTGGTAGATGCCGCAGTTTGG---ATCAAAGAAACTTGTTGGCCATCCCATCAGAGAGACgtgagttgaaaccatagtaaaaggtctttttgatgataaatagttgtgct #### B3gat3_ID2491_3 --> 1 - 0 Original Alignment gCTGGTACAAAAGGCAGAGCTGGTTCGGCTGTCCCAGACCCTGAGCTTGGTGCCCCGTCTACACTGGCTG---CTAGTGGAGGACGCTGAGAGCCCTACCCCGCTGGTCTCGGGGCTGTTGGCCGCCTCTGGTCTCCTCTTTACACACCTGGCTGTCCTTACCCCCAAGGCTCAACGGCTTAGGGAAGGTGAGCCAGGCTGGGTC---CGGCCCCGAGGAGTGGAACAGCGCAATAAGGCCCTCGACTGGCTCCGAGGAAAAGGGGGTGCTGTTGGGGGGGAGAAGGATCCACCGCCACCAGGGACCCAAGGAGTCGTGTATTTTGCTGACGATGACAACACCTACAGCCGGGAGCTCTTTAAGGAG ctttgatatatttaccagcatgggtagagaccttccttcctcgctggcagcTTAGTCCAAAAGGCAGAGCTAGTTCGCCTGTCTCAGACCCTGAGCCTACTCCCACACCTACACTGGTTACTATTAGTGGACGATGCCGAGAGCCCTATCCCACTGGTTTCAGGACTGCTAGCTGCTTCTGGCCTGGTGTTCACTCACCTAGCCGTCCTTACACCCAAGGCTCAGCAATTGAGGGAAGGTGAGCCTGGCTGGATTCGGCGGCCCCGTGGGGTAGAGCAGTGTAATAAGGCCCTGGACTGGGTTAGAGGGAAAAGAGGTACTGTGAGTGGTGAGAAAGATCCACCACCACCTGGGATTCAAGGGATTGTGTATTTTGCAGATGATGACAATGCCTACAGTCGAGAGTTTTTCAAGGAAgtaagtccctaatgcctcctggctaaggagagaaaaggaggaaggtagga Alignment from CESAR gCTGGTACAAAAGGCAGAGCTGGTTCGGCTGTCCCAGACCCTGAGCTTGGTGCCCCGTCTACACTGGCTGCTA---GTGGAGGACGCTGAGAGCCCTACCCCGCTGGTCTCGGGGCTGTTGGCCGCCTCTGGTCTCCTCTTTACACACCTGGCTGTCCTTACCCCCAAGGCTCAACGGCTTAGGGAAGGTGAGCCAGGCTGGGTCCGG---CCCCGAGGAGTGGAACAGCGCAATAAGGCCCTCGACTGGCTCCGAGGAAAAGGGGGTGCTGTTGGGGGGGAGAAGGATCCACCGCCACCAGGGACCCAAGGAGTCGTGTATTTTGCTGACGATGACAACACCTACAGCCGGGAGCTCTTTAAGGAG ctttgatatatttaccagcatgggtagagaccttccttcctcgctggcagcTTAGTCCAAAAGGCAGAGCTAGTTCGCCTGTCTCAGACCCTGAGCCTACTCCCACACCTACACTGGTTACTATTAGTGGACGATGCCGAGAGCCCTATCCCACTGGTTTCAGGACTGCTAGCTGCTTCTGGCCTGGTGTTCACTCACCTAGCCGTCCTTACACCCAAGGCTCAGCAATTGAGGGAAGGTGAGCCTGGCTGGATTCGGCGGCCCCGTGGGGTAGAGCAGTGTAATAAGGCCCTGGACTGGGTTAGAGGGAAAAGAGGTACTGTGAGTGGTGAGAAAGATCCACCACCACCTGGGATTCAAGGGATTGTGTATTTTGCAGATGATGACAATGCCTACAGTCGAGAGTTTTTCAAGGAAgtaagtccctaatgcctcctggctaaggagagaaaaggaggaaggtagga Alignment from Spaln_aa2Genome GCTGGTACAAAAGGCAGAGCTGGTTCGGCTGTCCCAGACCCTGAGCTTGGTGCCCCGTCTACACTGG---CTGCTAGTGGAGGACGCTGAGAGCCCTACCCCGCTGGTCTCGGGGCTGTTGGCCGCCTCTGGTCTCCTCTTTACACACCTGGCTGTCCTTACCCCCAAGGCTCAACGGCTTAGGGAAGGTGAGCCAGGCTGGGTC---CGGCCCCGAGGAGTGGAACAGCGCAATAAGGCCCTCGACTGGCTCCGAGGAAAAGGGGGTGCTGTTGGGGGGGAGAAGGATCCACCGCCACCAGGGACCCAAGGAGTCGTGTATTTTGCTGACGATGACAACACCTACAGCCGGGAGCTCTTTAAGGAG ctttgatatatttaccagcatgggtagagaccttccttcctcgctggcagCTTAGTCCAAAAGGCAGAGCTAGTTCGCCTGTCTCAGACCCTGAGCCTACTCCCACACCTACACTGGTTACTATTAGTGGACGATGCCGAGAGCCCTATCCCACTGGTTTCAGGACTGCTAGCTGCTTCTGGCCTGGTGTTCACTCACCTAGCCGTCCTTACACCCAAGGCTCAGCAATTGAGGGAAGGTGAGCCTGGCTGGATTCGGCGGCCCCGTGGGGTAGAGCAGTGTAATAAGGCCCTGGACTGGGTTAGAGGGAAAAGAGGTACTGTGAGTGGTGAGAAAGATCCACCACCACCTGGGATTCAAGGGATTGTGTATTTTGCAGATGATGACAATGCCTACAGTCGAGAGTTTTTCAAGGAAgtaagtccctaatgcctcctggctaaggagagaaaaggaggaaggtagga Alignment from Spaln_nt2Genome GCTGGTACAAAAGGCAGAGCTGGTTCGGCTGTCCCAGACCCTGAGCTTGGTGCCCCGTCTACACTGGCTGCTA---GTGGAGGACGCTGAGAGCCCTACCCCGCTGGTCTCGGGGCTGTTGGCCGCCTCTGGTCTCCTCTTTACACACCTGGCTGTCCTTACCCCCAAGGCTCAACGGCTTAGGGAAGGTGAGCCAGGCTGGGTCCGGC---CCCGAGGAGTGGAACAGCGCAATAAGGCCCTCGACTGGCTCCGAGGAAAAGGGGGTGCTGTTGGGGGGGAGAAGGATCCACCGCCACCAGGGACCCAAGGAGTCGTGTATTTTGCTGACGATGACAACACCTACAGCCGGGAGCTCTTTAAGGAG ctttgatatatttaccagcatgggtagagaccttccttcctcgctggcagCTTAGTCCAAAAGGCAGAGCTAGTTCGCCTGTCTCAGACCCTGAGCCTACTCCCACACCTACACTGGTTACTATTAGTGGACGATGCCGAGAGCCCTATCCCACTGGTTTCAGGACTGCTAGCTGCTTCTGGCCTGGTGTTCACTCACCTAGCCGTCCTTACACCCAAGGCTCAGCAATTGAGGGAAGGTGAGCCTGGCTGGATTCGGCGGCCCCGTGGGGTAGAGCAGTGTAATAAGGCCCTGGACTGGGTTAGAGGGAAAAGAGGTACTGTGAGTGGTGAGAAAGATCCACCACCACCTGGGATTCAAGGGATTGTGTATTTTGCAGATGATGACAATGCCTACAGTCGAGAGTTTTTCAAGGAAgtaagtccctaatgcctcctggctaaggagagaaaaggaggaaggtagga Alignment from Pairagon GCTGGTACAAAAGGCAGAGCTGGTTCGGCTGTCCCAGACCCTGAGCTTGGTGCCCCGTCTACACTGG---CTGCTAGTGGAGGACGCTGAGAGCCCTACCCCGCTGGTCTCGGGGCTGTTGGCCGCCTCTGGTCTCCTCTTTACACACCTGGCTGTCCTTACCCCCAAGGCTCAACGGCTTAGGGAAGGTGAGCCAGGCTGGGTC---CGGCCCCGAGGAGTGGAACAGCGCAATAAGGCCCTCGACTGGCTCCGAGGAAAAGGGGGTGCTGTTGGGGGGGAGAAGGATCCACCGCCACCAGGGACCCAAGGAGTCGTGTATTTTGCTGACGATGACAACACCTACAGCCGGGAGCTCTTTAAGGAG ctttgatatatttaccagcatgggtagagaccttccttcctcgctggcagCTTAGTCCAAAAGGCAGAGCTAGTTCGCCTGTCTCAGACCCTGAGCCTACTCCCACACCTACACTGGTTACTATTAGTGGACGATGCCGAGAGCCCTATCCCACTGGTTTCAGGACTGCTAGCTGCTTCTGGCCTGGTGTTCACTCACCTAGCCGTCCTTACACCCAAGGCTCAGCAATTGAGGGAAGGTGAGCCTGGCTGGATTCGGCGGCCCCGTGGGGTAGAGCAGTGTAATAAGGCCCTGGACTGGGTTAGAGGGAAAAGAGGTACTGTGAGTGGTGAGAAAGATCCACCACCACCTGGGATTCAAGGGATTGTGTATTTTGCAGATGATGACAATGCCTACAGTCGAGAGTTTTTCAAGGAAgtaagtccctaatgcctcctggctaaggagagaaaaggaggaaggtagga Alignment from Exonerate_protein2genome CAGGCTGGTACAAAAGGCAGAGCTGGTTCGGCTGTCCCAGACCCTGAGCTTGGTGCCCCGTCTACACTGG---CTGCTAGTGGAGGACGCTGAGAGCCCTACCCCGCTGGTCTCGGGGCTGTTGGCCGCCTCTGGTCTCCTCTTTACACACCTGGCTGTCCTTACCCCCAAGGCTCAACGGCTTAGGGAAGGTGAGCCAGGCTGGGTC---CGGCCCCGAGGAGTGGAACAGCGCAATAAGGCCCTCGACTGGCTCCGAGGAAAAGGGGGTGCTGTTGGGGGGGAGAAGGATCCACCGCCACCAGGGACCCAAGGAGTCGTGTATTTTGCTGACGATGACAACACCTACAGCCGGGAGCTCTTTAAGGAG ctttgatatatttaccagcatgggtagagaccttccttcctcgctggCAGCTTAGTCCAAAAGGCAGAGCTAGTTCGCCTGTCTCAGACCCTGAGCCTACTCCCACACCTACACTGGTTACTATTAGTGGACGATGCCGAGAGCCCTATCCCACTGGTTTCAGGACTGCTAGCTGCTTCTGGCCTGGTGTTCACTCACCTAGCCGTCCTTACACCCAAGGCTCAGCAATTGAGGGAAGGTGAGCCTGGCTGGATTCGGCGGCCCCGTGGGGTAGAGCAGTGTAATAAGGCCCTGGACTGGGTTAGAGGGAAAAGAGGTACTGTGAGTGGTGAGAAAGATCCACCACCACCTGGGATTCAAGGGATTGTGTATTTTGCAGATGATGACAATGCCTACAGTCGAGAGTTTTTCAAGGAAgtaagtccctaatgcctcctggctaaggagagaaaaggaggaaggtagga Alignment from Exonerate_coding2genome CAGGCTGGTACAAAAGGCAGAGCTGGTTCGGCTGTCCCAGACCCTGAGCTTGGTGCCCCGTCTACACTGG---CTGCTAGTGGAGGACGCTGAGAGCCCTACCCCGCTGGTCTCGGGGCTGTTGGCCGCCTCTGGTCTCCTCTTTACACACCTGGCTGTCCTTACCCCCAAGGCTCAACGGCTTAGGGAAGGTGAGCCAGGCTGGGTC---CGGCCCCGAGGAGTGGAACAGCGCAATAAGGCCCTCGACTGGCTCCGAGGAAAAGGGGGTGCTGTTGGGGGGGAGAAGGATCCACCGCCACCAGGGACCCAAGGAGTCGTGTATTTTGCTGACGATGACAACACCTACAGCCGGGAGCTCTTTAAGGAG ctttgatatatttaccagcatgggtagagaccttccttcctcgctggCAGCTTAGTCCAAAAGGCAGAGCTAGTTCGCCTGTCTCAGACCCTGAGCCTACTCCCACACCTACACTGGTTACTATTAGTGGACGATGCCGAGAGCCCTATCCCACTGGTTTCAGGACTGCTAGCTGCTTCTGGCCTGGTGTTCACTCACCTAGCCGTCCTTACACCCAAGGCTCAGCAATTGAGGGAAGGTGAGCCTGGCTGGATTCGGCGGCCCCGTGGGGTAGAGCAGTGTAATAAGGCCCTGGACTGGGTTAGAGGGAAAAGAGGTACTGTGAGTGGTGAGAAAGATCCACCACCACCTGGGATTCAAGGGATTGTGTATTTTGCAGATGATGACAATGCCTACAGTCGAGAGTTTTTCAAGGAAgtaagtccctaatgcctcctggctaaggagagaaaaggaggaaggtagga Alignment from GeneWise GCTGGTACAAAAGGCAGAGCTGGTTCGGCTGTCCCAGACCCTGAGCTTGGTGCCCCGTCTACACTGGCTGCTA---GTGGAGGACGCTGAGAGCCCTACCCCGCTGGTCTCGGGGCTGTTGGCCGCCTCTGGTCTCCTCTTTACACACCTGGCTGTCCTTACCCCCAAGGCTCAACGGCTTAGGGAAGGTGAGCCAGGCTGGGTCCGG---CCCCGAGGAGTGGAACAGCGCAATAAGGCCCTCGACTGGCTCCGAGGAAAAGGGGGTGCTGTTGGGGGGGAGAAGGATCCACCGCCACCAGGGACCCAAGGAGTCGTGTATTTTGCTGACGATGACAACACCTACAGCCGGGAGCTCTTTAAGGAG ctttgatatatttaccagcatgggtagagaccttccttcctcgctggcagCTTAGTCCAAAAGGCAGAGCTAGTTCGCCTGTCTCAGACCCTGAGCCTACTCCCACACCTACACTGGTTACTATTAGTGGACGATGCCGAGAGCCCTATCCCACTGGTTTCAGGACTGCTAGCTGCTTCTGGCCTGGTGTTCACTCACCTAGCCGTCCTTACACCCAAGGCTCAGCAATTGAGGGAAGGTGAGCCTGGCTGGATTCGGCGGCCCCGTGGGGTAGAGCAGTGTAATAAGGCCCTGGACTGGGTTAGAGGGAAAAGAGGTACTGTGAGTGGTGAGAAAGATCCACCACCACCTGGGATTCAAGGGATTGTGTATTTTGCAGATGATGACAATGCCTACAGTCGAGAGTTTTTCAAGGAAgtaagtccctaatgcctcctggctaaggagagaaaaggaggaaggtagga #### Bad_ID1894_2 --> 2 - 1 Original Alignment ccCAGAGTATGTTCCAGATCCCAGAGTTTGAGCCGAGTGAGCAGGAAGACGCTAGTGCTACAGATAGGGGCCTGGGCCCTAGCCTCACTGAGGACCAGCCAGGTCCCTACCTGGCCCCAGGTCTCCTGGGGAGCAACATTCATCAGCAGGGACGGGCAGCCACCAACAGTCATCATGGAg aactaccaacctcatattaagttaggtaaacgagtggtttgttgttgcagctGAAAGCATGTCCCAAATCCCGGAGTTTGAGCTAAGTGAGCAGGAAGATTCCAGTGCTACAGGTAGTGGCTTAGGCCCTAGCCTAACTGAAGGCCAGCCAGGTCCCTACCTGGTCTCGGGTCTCTTAGGAAGTAACATTCATCAGCTGGGACATTCAGCAACAAACAGCCCGCATGGAggtatgttgcttgtaaccctctctatattctataagagttcttttgagagg Alignment from CESAR ccCAGAGTATGTTCCAGATCCCAGAGTTTGAGCCGAGTGAGCAGGAAGACGCTAGTGCTACAGATAGGGGCCTGGGCCCTAGCCTCACTGAGGACCAGCCAGGTCCCTACCTGGCCCCAGGTCTCCTGGGGAGCAACATTCATCAGCAGGGACGGGCAGCCACCAACAGTCATCATGGAg aactaccaacctcatattaagttaggtaaacgagtggtttgttgttgcagctGAAAGCATGTCCCAAATCCCGGAGTTTGAGCTAAGTGAGCAGGAAGATTCCAGTGCTACAGGTAGTGGCTTAGGCCCTAGCCTAACTGAAGGCCAGCCAGGTCCCTACCTGGTCTCGGGTCTCTTAGGAAGTAACATTCATCAGCTGGGACATTCAGCAACAAACAGCCCGCATGGAggtatgttgcttgtaaccctctctatattctataagagttcttttgagagg Alignment from Spaln_aa2Genome CCCAGAGTATGTTCCAGATCCCAGAGTTTGAGCCGAGTGAGCAGGAAGACGCTAGTGCTACAGATAGGGGCCTGGGCCCTAGCCTCACTGAGGACCAGCCAGGTCCCTACCTGGCCCCAGGTCTCCTGGGGAGCAACATTCATCAGCAGGGACGGGCAGCCACCAACAGTCATCATGGAG aactaccaacctcatattaagttaggtaaacgagtggtttgttgttgcagCTGAAAGCATGTCCCAAATCCCGGAGTTTGAGCTAAGTGAGCAGGAAGATTCCAGTGCTACAGGTAGTGGCTTAGGCCCTAGCCTAACTGAAGGCCAGCCAGGTCCCTACCTGGTCTCGGGTCTCTTAGGAAGTAACATTCATCAGCTGGGACATTCAGCAACAAACAGCCCGCATGGAGgtatgttgcttgtaaccctctctatattctataagagttcttttgagagg Alignment from Spaln_nt2Genome CCCAGAGTATGTTCCAGATCCCAGAGTTTGAGCCGAGTGAGCAGGAAGACGCTAGTGCTACAGATAGGGGCCTGGGCCCTAGCCTCACTGAGGACCAGCCAGGTCCCTACCTGGCCCCAGGTCTCCTGGGGAGCAACATTCATCAGCAGGGACGGGCAGCCACCAACAGTCATCATGGAG aactaccaacctcatattaagttaggtaaacgagtggtttgttgttgcagCTGAAAGCATGTCCCAAATCCCGGAGTTTGAGCTAAGTGAGCAGGAAGATTCCAGTGCTACAGGTAGTGGCTTAGGCCCTAGCCTAACTGAAGGCCAGCCAGGTCCCTACCTGGTCTCGGGTCTCTTAGGAAGTAACATTCATCAGCTGGGACATTCAGCAACAAACAGCCCGCATGGAGgtatgttgcttgtaaccctctctatattctataagagttcttttgagagg Alignment from Pairagon CCCAGAGTATGTTCCAGATCCCAGAGTTTGAGCCGAGTGAGCAGGAAGACGCTAGTGCTACAGATAGGGGCCTGGGCCCTAGCCTCACTGAGGACCAGCCAGGTCCCTACCTGGCCCCAGGTCTCCTGGGGAGCAACATTCATCAGCAGGGACGGGCAGCCACCAACAGTCATCATGGAG aactaccaacctcatattaagttaggtaaacgagtggtttgttgttgcagCTGAAAGCATGTCCCAAATCCCGGAGTTTGAGCTAAGTGAGCAGGAAGATTCCAGTGCTACAGGTAGTGGCTTAGGCCCTAGCCTAACTGAAGGCCAGCCAGGTCCCTACCTGGTCTCGGGTCTCTTAGGAAGTAACATTCATCAGCTGGGACATTCAGCAACAAACAGCCCGCATGGAGgtatgttgcttgtaaccctctctatattctataagagttcttttgagagg Alignment from Exonerate_protein2genome CCCAGAGTATGTTCCAGATCCCAGAGTTTGAGCCGAGTGAGCAGGAAGACGCTAGTGCTACAGATAGGGGCCTGGGCCCTAGCCTCACTGAGGACCAGCCAGGTCCCTACCTGGCCCCAGGTCTCCTGGGGAGCAACATTCATCAGCAGGGACGGGCAGCCACCAACAGTCATCATGGAG aactaccaacctcatattaagttaggtaaacgagtggtttgttgttgcagCTGAAAGCATGTCCCAAATCCCGGAGTTTGAGCTAAGTGAGCAGGAAGATTCCAGTGCTACAGGTAGTGGCTTAGGCCCTAGCCTAACTGAAGGCCAGCCAGGTCCCTACCTGGTCTCGGGTCTCTTAGGAAGTAACATTCATCAGCTGGGACATTCAGCAACAAACAGCCCGCATGGAGgtatgttgcttgtaaccctctctatattctataagagttcttttgagagg Alignment from Exonerate_coding2genome CCCAGAGTATGTTCCAGATCCCAGAGTTTGAGCCGAGTGAGCAGGAAGACGCTAGTGCTACAGATAGGGGCCTGGGCCCTAGCCTCACTGAGGACCAGCCAGGTCCCTACCTGGCCCCAGGTCTCCTGGGGAGCAACATTCATCAGCAGGGACGGGCAGCCACCAACAGTCATCATGGAG aactaccaacctcatattaagttaggtaaacgagtggtttgttgttgcagCTGAAAGCATGTCCCAAATCCCGGAGTTTGAGCTAAGTGAGCAGGAAGATTCCAGTGCTACAGGTAGTGGCTTAGGCCCTAGCCTAACTGAAGGCCAGCCAGGTCCCTACCTGGTCTCGGGTCTCTTAGGAAGTAACATTCATCAGCTGGGACATTCAGCAACAAACAGCCCGCATGGAGgtatgttgcttgtaaccctctctatattctataagagttcttttgagagg Alignment from GeneWise CCCAGAGTATGTTCCAGATCCCAGAGTTTGAGCCGAGTGAGCAGGAAGACGCTAGTGCTACAGATAGGGGCCTGGGCCCTAGCCTCACTGAGGACCAGCCAGGTCCCTACCTGGCCCCAGGTCTCCTGGGGAGCAACATTCATCAGCAGGGACGGGCAGCCACCAACAGTCATCATGGAG aactaccaacctcatattaagttaggtaaacgagtggtttgttgttgcagCTGAAAGCATGTCCCAAATCCCGGAGTTTGAGCTAAGTGAGCAGGAAGATTCCAGTGCTACAGGTAGTGGCTTAGGCCCTAGCCTAACTGAAGGCCAGCCAGGTCCCTACCTGGTCTCGGGTCTCTTAGGAAGTAACATTCATCAGCTGGGACATTCAGCAACAAACAGCCCGCATGGAGgtatgttgcttgtaaccctctctatattctataagagttcttttgagagg #### Bbs1_ID725_9 --> 0 - 2 Original Alignment ATGAGCCTGCCCAGTGTCCCTGTCTTCCTGGAGGTTTCCGGCCAGTTTGATGTGGAGTTCCGGTTGACTGCTGCCTGCCGAAATGGGAGCATCTATATCCTGAGAag caggcaggtcaggatgaatggcaggtatgttgccccatttccccacccagATGAGCTTACCAAGTGTCCCTGTTTTCTTGGAGGTCTCTGGACAGTTTGACGTTGAGTTCCGGCTGACAGCTGCATGCCGAAATGGGAGTATCTACATCTTGAGAcagtaatgcagtcatcaacaaaaagggctggactcttgcttgatccggccag Alignment from CESAR ATGAGCCTGCCCAGTGTCCCTGTCTTCCTGGAGGTTTCCGGCCAGTTTGATGTGGAGTTCCGGTTGACTGCTGCCTGCCGAAATGGGAGCATCTATATCCTGAGAag caggcaggtcaggatgaatggcaggtatgttgccccatttccccacccagATGAGCTTACCAAGTGTCCCTGTTTTCTTGGAGGTCTCTGGACAGTTTGACGTTGAGTTCCGGCTGACAGCTGCATGCCGAAATGGGAGTATCTACATCTTGAGAcagtaatgcagtcatcaacaaaaagggctggactcttgcttgatccggccag Alignment from Spaln_aa2Genome ATGAGCCTGCCCAGTGTCCCTGTCTTCCTGGAGGTTTCCGGCCAGTTTGATGTGGAGTTCCGGTTGACTGCTGCCTGCCGAAATGGGAGCATCTATATCCTGAGAAG caggcaggtcaggatgaatggcaggtatgttgccccatttccccacccagATGAGCTTACCAAGTGTCCCTGTTTTCTTGGAGGTCTCTGGACAGTTTGACGTTGAGTTCCGGCTGACAGCTGCATGCCGAAATGGGAGTATCTACATCTTGAGACAgtaatgcagtcatcaacaaaaagggctggactcttgcttgatccggccag Alignment from Spaln_nt2Genome ATGAGCCTGCCCAGTGTCCCTGTCTTCCTGGAGGTTTCCGGCCAGTTTGATGTGGAGTTCCGGTTGACTGCTGCCTGCCGAAATGGGAGCATCTATATCCTGAGAAG caggcaggtcaggatgaatggcaggtatgttgccccatttccccacccagATGAGCTTACCAAGTGTCCCTGTTTTCTTGGAGGTCTCTGGACAGTTTGACGTTGAGTTCCGGCTGACAGCTGCATGCCGAAATGGGAGTATCTACATCTTGAGACAgtaatgcagtcatcaacaaaaagggctggactcttgcttgatccggccag Alignment from Pairagon ATGAGCCTGCCCAGTGTCCCTGTCTTCCTGGAGGTTTCCGGCCAGTTTGATGTGGAGTTCCGGTTGACTGCTGCCTGCCGAAATGGGAGCATCTATATCCTGAGAAG caggcaggtcaggatgaatggcaggtatgttgccccatttccccacccagATGAGCTTACCAAGTGTCCCTGTTTTCTTGGAGGTCTCTGGACAGTTTGACGTTGAGTTCCGGCTGACAGCTGCATGCCGAAATGGGAGTATCTACATCTTGAGACAgtaatgcagtcatcaacaaaaagggctggactcttgcttgatccggccag Alignment from Exonerate_protein2genome ATGAGCCTGCCCAGTGTCCCTGTCTTCCTGGAGGTTTCCGGCCAGTTTGATGTGGAGTTCCGGTTGACTGCTGCCTGCCGAAATGGGAGCATCTATATCCTGAGAAG caggcaggtcaggatgaatggcaggtatgttgccccatttccccacccagATGAGCTTACCAAGTGTCCCTGTTTTCTTGGAGGTCTCTGGACAGTTTGACGTTGAGTTCCGGCTGACAGCTGCATGCCGAAATGGGAGTATCTACATCTTGAGACAgtaatgcagtcatcaacaaaaagggctggactcttgcttgatccggccag Alignment from Exonerate_coding2genome ATGAGCCTGCCCAGTGTCCCTGTCTTCCTGGAGGTTTCCGGCCAGTTTGATGTGGAGTTCCGGTTGACTGCTGCCTGCCGAAATGGGAGCATCTATATCCTGAGAAG caggcaggtcaggatgaatggcaggtatgttgccccatttccccacccagATGAGCTTACCAAGTGTCCCTGTTTTCTTGGAGGTCTCTGGACAGTTTGACGTTGAGTTCCGGCTGACAGCTGCATGCCGAAATGGGAGTATCTACATCTTGAGACAgtaatgcagtcatcaacaaaaagggctggactcttgcttgatccggccag Alignment from GeneWise ATGAGCCTGCCCAGTGTCCCTGTCTTCCTGGAGGTTTCCGGCCAGTTTGATGTGGAGTTCCGGTTGACTGCTGCCTGCCGAAATGGGAGCATCTATATCCTGAGAAG caggcaggtcaggatgaatggcaggtatgttgccccatttccccacccagATGAGCTTACCAAGTGTCCCTGTTTTCTTGGAGGTCTCTGGACAGTTTGACGTTGAGTTCCGGCTGACAGCTGCATGCCGAAATGGGAGTATCTACATCTTGAGACAgtaatgcagtcatcaacaaaaagggctggactcttgcttgatccggccag #### Bbs1_ID726_8 --> 0 - 0 Original Alignment ACAGTCATCACCACCATGACCACCCTGAAGAAGAACCTGGCAGATGAGGACGCAGCGTCCTGTCTGGTGCTAGGCACTGAGAGCAAGGAACTCCTAGTGCTGGACCCTGAGGCCTTCACCATTTTGGCCAAG gcctgttctggtcaggtgtggaataggtgtctgctcctgtgtctaaacagGCAGTAATGACCACCACAACTACACTCAAAAAGAATCTGGCAGACGAGGATGCAGCGTCCTGTCTGGTATTGGGGGCTGAGAGCAAAGAGCTACTAGTTCTGGACCCT---GCCTTCACCATTTCGGCCAAGgtttgtgatgaatctccctgcttgggtttaatccagagcattttcccacc Alignment from CESAR ACAGTCATCACCACCATGACCACCCTGAAGAAGAACCTGGCAGATGAGGACGCAGCGTCCTGTCTGGTGCTAGGCACTGAGAGCAAGGAACTCCTAGTGCTGGACCCTGAGGCCTTCACCATTTTGGCCAAG gcctgttctggtcaggtgtggaataggtgtctgctcctgtgtctaaacagGCAGTAATGACCACCACAACTACACTCAAAAAGAATCTGGCAGACGAGGATGCAGCGTCCTGTCTGGTATTGGGGGCTGAGAGCAAAGAGCTACTAGTTCTGGACCCT---GCCTTCACCATTTCGGCCAAGgtttgtgatgaatctccctgcttgggtttaatccagagcattttcccacc Alignment from Spaln_aa2Genome ACAGTCATCACCACCATGACCACCCTGAAGAAGAACCTGGCAGATGAGGACGCAGCGTCCTGTCTGGTGCTAGGCACTGAGAGCAAGGAACTCCTAGTGCTGGACCCTGAGGCCTTCACCATTTTGGCCAAG gcctgttctggtcaggtgtggaataggtgtctgctcctgtgtctaaacagGCAGTAATGACCACCACAACTACACTCAAAAAGAATCTGGCAGACGAGGATGCAGCGTCCTGTCTGGTATTGGGGGCTGAGAGCAAAGAGCTACTAGTTCTGGACCCT---GCCTTCACCATTTCGGCCAAGgtttgtgatgaatctccctgcttgggtttaatccagagcattttcccacc Alignment from Spaln_nt2Genome ACAGTCATCACCACCATGACCACCCTGAAGAAGAACCTGGCAGATGAGGACGCAGCGTCCTGTCTGGTGCTAGGCACTGAGAGCAAGGAACTCCTAGTGCTGGACCCTGAGGCCTTCACCATTTTGGCCAAG gcctgttctggtcaggtgtggaataggtgtctgctcctgtgtctaaacagGCAGTAATGACCACCACAACTACACTCAAAAAGAATCTGGCAGACGAGGATGCAGCGTCCTGTCTGGTATTGGGGGCTGAGAGCAAAGAGCTACTAGTTCTGGACCCT---GCCTTCACCATTTCGGCCAAGgtttgtgatgaatctccctgcttgggtttaatccagagcattttcccacc Alignment from Pairagon ACAGTCATCACCACCATGACCACCCTGAAGAAGAACCTGGCAGATGAGGACGCAGCGTCCTGTCTGGTGCTAGGCACTGAGAGCAAGGAACTCCTAGTGCTGGACCCTGAGGCCTTCACCATTTTGGCCAAG gcctgttctggtcaggtgtggaataggtgtctgctcctgtgtctaaacagGCAGTAATGACCACCACAACTACACTCAAAAAGAATCTGGCAGACGAGGATGCAGCGTCCTGTCTGGTATTGGGGGCTGAGAGCAAAGAGCTACTAGTTCTGGACCCT---GCCTTCACCATTTCGGCCAAGgtttgtgatgaatctccctgcttgggtttaatccagagcattttcccacc Alignment from Exonerate_protein2genome ACAGTCATCACCACCATGACCACCCTGAAGAAGAACCTGGCAGATGAGGACGCAGCGTCCTGTCTGGTGCTAGGCACTGAGAGCAAGGAACTCCTAGTGCTGGACCCTGAGGCCTTCACCATTTTGGCCAAG gcctgttctggtcaggtgtggaataggtgtctgctcctgtgtctaaacagGCAGTAATGACCACCACAACTACACTCAAAAAGAATCTGGCAGACGAGGATGCAGCGTCCTGTCTGGTATTGGGGGCTGAGAGCAAAGAGCTACTAGTTCTGGACCCT---GCCTTCACCATTTCGGCCAAGgtttgtgatgaatctccctgcttgggtttaatccagagcattttcccacc Alignment from Exonerate_coding2genome ACAGTCATCACCACCATGACCACCCTGAAGAAGAACCTGGCAGATGAGGACGCAGCGTCCTGTCTGGTGCTAGGCACTGAGAGCAAGGAACTCCTAGTGCTGGACCCTGAGGCCTTCACCATTTTGGCCAAG gcctgttctggtcaggtgtggaataggtgtctgctcctgtgtctaaacagGCAGTAATGACCACCACAACTACACTCAAAAAGAATCTGGCAGACGAGGATGCAGCGTCCTGTCTGGTATTGGGGGCTGAGAGCAAAGAGCTACTAGTTCTGGACCCT---GCCTTCACCATTTCGGCCAAGgtttgtgatgaatctccctgcttgggtttaatccagagcattttcccacc Alignment from GeneWise ACAGTCATCACCACCATGACCACCCTGAAGAAGAACCTGGCAGATGAGGACGCAGCGTCCTGTCTGGTGCTAGGCACTGAGAGCAAGGAACTCCTAGTGCTGGACCCTGAGGCCTTCACCATTTTGGCCAAG gcctgttctggtcaggtgtggaataggtgtctgctcctgtgtctaaacagGCAGTAATGACCACCACAACTACACTCAAAAAGAATCTGGCAGACGAGGATGCAGCGTCCTGTCTGGTATTGGGGGCTGAGAGCAAAGAGCTACTAGTTCTGGACCCT---GCCTTCACCATTTCGGCCAAGgtttgtgatgaatctccctgcttgggtttaatccagagcattttcccacc #### Bbs1_ID730_4 --> 0 - 0 Original Alignment CTGGTGGTGGGAGACCTTGGCCCAGGTGGGCAGCAGCCCCGCCTGAAGGTGCTCAAAGGACCCACAGTGCTGACGGAGAGCCCACTGCCTGCCCTGCCAGCCTCGGCTGCCACCTTCCTCATGGACCAACACGAGCCCAGGACACCTGCCCTGGCACTCGCCTCAGGGCCTTGTGTCTATGTTTATAAGAACCTTAGACCCTACTTCAAGTTCAGCCTGCCCCAGTTACCTCCAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAG agatgtgagtatgtgtgtggagaggagagggtttttattttttccttcagCTATTGGTTGGACACCTAGGTGCAGGGGGTTGGCAGCCCCACCTGAAAGTACTTAAAGGCCCTACAGTACTAATGGAGAGCCCTCTCTCTGCATTGCCAGCCTCAGCTGCCACCTTTCTCATGGATCAACATGAGTCCAGAACACCTGCTCTGGCACTTGCATCAGGACCTTGCGTTTATGTTTATAAAAACCTCCGACCCTATTTTAAATTGAGCCTTCCCCAGTTA---ACAAACCCCCTAAAACAAGATGTCTGGAATCAAGCCAAAGAGgtaagcaatgcaactccaaaagtatccacccacaaaagaaacattataga Alignment from CESAR CTGGTGGTGGGAGACCTTGGCCCAGGTGGGCAGCAGCCCCGCCTGAAGGTGCTCAAAGGACCCACAGTGCTGACGGAGAGCCCACTGCCTGCCCTGCCAGCCTCGGCTGCCACCTTCCTCATGGACCAACACGAGCCCAGGACACCTGCCCTGGCACTCGCCTCAGGGCCTTGTGTCTATGTTTATAAGAACCTTAGACCCTACTTCAAGTTCAGCCTGCCCCAGTTACCTCCAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAG agatgtgagtatgtgtgtggagaggagagggtttttattttttccttcagCTATTGGTTGGACACCTAGGTGCAGGGGGTTGGCAGCCCCACCTGAAAGTACTTAAAGGCCCTACAGTACTAATGGAGAGCCCTCTCTCTGCATTGCCAGCCTCAGCTGCCACCTTTCTCATGGATCAACATGAGTCCAGAACACCTGCTCTGGCACTTGCATCAGGACCTTGCGTTTATGTTTATAAAAACCTCCGACCCTATTTTAAATTGAGCCTTCCCCAGTTA---ACAAACCCCCTAAAACAAGATGTCTGGAATCAAGCCAAAGAGgtaagcaatgcaactccaaaagtatccacccacaaaagaaacattataga Alignment from Spaln_aa2Genome CTGGTGGTGGGAGACCTTGGCCCAGGTGGGCAGCAGCCCCGCCTGAAGGTGCTCAAAGGACCCACAGTGCTGACGGAGAGCCCACTGCCTGCCCTGCCAGCCTCGGCTGCCACCTTCCTCATGGACCAACACGAGCCCAGGACACCTGCCCTGGCACTCGCCTCAGGGCCTTGTGTCTATGTTTATAAGAACCTTAGACCCTACTTCAAGTTCAGCCTGCCCCAGTTACCTCCAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAG agatgtgagtatgtgtgtggagaggagagggtttttattttttccttcagCTATTGGTTGGACACCTAGGTGCAGGGGGTTGGCAGCCCCACCTGAAAGTACTTAAAGGCCCTACAGTACTAATGGAGAGCCCTCTCTCTGCATTGCCAGCCTCAGCTGCCACCTTTCTCATGGATCAACATGAGTCCAGAACACCTGCTCTGGCACTTGCATCAGGACCTTGCGTTTATGTTTATAAAAACCTCCGACCCTATTTTAAATTGAGCCTTCCCCAGTTA---ACAAACCCCCTAAAACAAGATGTCTGGAATCAAGCCAAAGAGgtaagcaatgcaactccaaaagtatccacccacaaaagaaacattataga Alignment from Spaln_nt2Genome CTGGTGGTGGGAGACCTTGGCCCAGGTGGGCAGCAGCCCCGCCTGAAGGTGCTCAAAGGACCCACAGTGCTGACGGAGAGCCCACTGCCTGCCCTGCCAGCCTCGGCTGCCACCTTCCTCATGGACCAACACGAGCCCAGGACACCTGCCCTGGCACTCGCCTCAGGGCCTTGTGTCTATGTTTATAAGAACCTTAGACCCTACTTCAAGTTCAGCCTGCCCCAGTTACCTCCAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAG agatgtgagtatgtgtgtggagaggagagggtttttattttttccttcagCTATTGGTTGGACACCTAGGTGCAGGGGGTTGGCAGCCCCACCTGAAAGTACTTAAAGGCCCTACAGTACTAATGGAGAGCCCTCTCTCTGCATTGCCAGCCTCAGCTGCCACCTTTCTCATGGATCAACATGAGTCCAGAACACCTGCTCTGGCACTTGCATCAGGACCTTGCGTTTATGTTTATAAAAACCTCCGACCCTATTTTAAATTGAGCCTTCCCCAGTTA---ACAAACCCCCTAAAACAAGATGTCTGGAATCAAGCCAAAGAGgtaagcaatgcaactccaaaagtatccacccacaaaagaaacattataga Alignment from Pairagon CTGGTGGTGGGAGACCTTGGCCCAGGTGGGCAGCAGCCCCGCCTGAAGGTGCTCAAAGGACCCACAGTGCTGACGGAGAGCCCACTGCCTGCCCTGCCAGCCTCGGCTGCCACCTTCCTCATGGACCAACACGAGCCCAGGACACCTGCCCTGGCACTCGCCTCAGGGCCTTGTGTCTATGTTTATAAGAACCTTAGACCCTACTTCAAGTTCAGCCTGCCCCAGTTACCTCCAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAG agatgtgagtatgtgtgtggagaggagagggtttttattttttccttcagCTATTGGTTGGACACCTAGGTGCAGGGGGTTGGCAGCCCCACCTGAAAGTACTTAAAGGCCCTACAGTACTAATGGAGAGCCCTCTCTCTGCATTGCCAGCCTCAGCTGCCACCTTTCTCATGGATCAACATGAGTCCAGAACACCTGCTCTGGCACTTGCATCAGGACCTTGCGTTTATGTTTATAAAAACCTCCGACCCTATTTTAAATTGAGCCTTCCCCAGTTA---ACAAACCCCCTAAAACAAGATGTCTGGAATCAAGCCAAAGAGgtaagcaatgcaactccaaaagtatccacccacaaaagaaacattataga Alignment from Exonerate_protein2genome CTGGTGGTGGGAGACCTTGGCCCAGGTGGGCAGCAGCCCCGCCTGAAGGTGCTCAAAGGACCCACAGTGCTGACGGAGAGCCCACTGCCTGCCCTGCCAGCCTCGGCTGCCACCTTCCTCATGGACCAACACGAGCCCAGGACACCTGCCCTGGCACTCGCCTCAGGGCCTTGTGTCTATGTTTATAAGAACCTTAGACCCTACTTCAAGTTCAGCCTGCCCCAGTTACCTCCAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAG agatgtgagtatgtgtgtggagaggagagggtttttattttttccttcagCTATTGGTTGGACACCTAGGTGCAGGGGGTTGGCAGCCCCACCTGAAAGTACTTAAAGGCCCTACAGTACTAATGGAGAGCCCTCTCTCTGCATTGCCAGCCTCAGCTGCCACCTTTCTCATGGATCAACATGAGTCCAGAACACCTGCTCTGGCACTTGCATCAGGACCTTGCGTTTATGTTTATAAAAACCTCCGACCCTATTTTAAATTGAGCCTTCCCCAGTTA---ACAAACCCCCTAAAACAAGATGTCTGGAATCAAGCCAAAGAGgtaagcaatgcaactccaaaagtatccacccacaaaagaaacattataga Alignment from Exonerate_coding2genome agatgtgagtatgtgtgtggagaggagagggtttttattttttccttcagctattggttggacacctaggtgcagggggttggcagccccacctgaaagtacttaaaggccctacagtactaatggagagccctctctctgcattgccagcctcagctgccacctttctcatggatcaacatgagtccagaacacctgctctggcacttgcatcaggaccttgcgtttatgtttataaaaacctccgaccctattttaaattgagccttccccagttaacaaaccccctaaaacaagatgtctggaatcaagccaaagaggtaagcaatgcaactccaaaagtatccacccacaaaagaaacattataga Alignment from GeneWise CTGGTGGTGGGAGACCTTGGCCCAGGTGGGCAGCAGCCCCGCCTGAAGGTGCTCAAAGGACCCACAGTGCTGACGGAGAGCCCACTGCCTGCCCTGCCAGCCTCGGCTGCCACCTTCCTCATGGACCAACACGAGCCCAGGACACCTGCCCTGGCACTCGCCTCAGGGCCTTGTGTCTATGTTTATAAGAACCTTAGACCCTACTTCAAGTTCAGCCTGCCCCAGTTACCTCCAAACCCTTTGGAACAGGACGTTTGGAACCAAGCCAAAGAGGACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCAGGGA agatgtgagtatgtgtgtggagaggagagggtttttattttttccttcagCTATTGGTTGGACACCTAGGTGCAGGGGGTTGGCAGCCCCACCTGAAAGTACTTAAAGGCCCTACAGTACTAATGGAGAGCCCTCTCTCTGCATTGCCAGCCTCAGCTGCCACCTTTCTCATGGATCAACATGAGTCCAGAACACCTGCTCTGGCACTTGCATCAGGACCTTGCGTTTATGTTTATAAAAACCTCCGACCCTATTTTAAATTGAGCCTTCCCCAGTTAACA---AACCCCCTAAAACAAGATGTCTGGAATCAAGCCAAAGAGGTAAGCAATGCAACTCCAAAAGTATCCACCCACAAAAGAAACATTATAGA #### Best1_ID2629_10 --> 2 - 2 Original Alignment gtGATGGGCCTTCCACAGATTACCAAGAAATCTGTCACATGAAAAAGAAAACTGTGGAGTTTAACTTGAACATTCCAGAGAGCCCCACAGAACATCTTCAACAGCGCCGTTTGGACCAGATGTCAACCAATATACAGGCTCTAATGAAGGAGCATGCAGAGTCCTATCCCTACag ctatccatgctagatagcataatcaagacatgcctgtgcctttctttcaggtGACGGTCCATCCACTGATTACCAAGAGATTCGACACATGAAGAAGAAGACTGTGGAATCTAACTTGAACATTCCGGAGAGCCCCTCAGAACATCTTCAACAGCGCCGTTTGGATCAGATGTCCACTAATATACGGGCACTAATGAAACAGCATGCAGAGTCCTATCCGTATaggtgggaatatctctagtcagtgggggcttcattcccttctggagacatta Alignment from CESAR gtGATGGGCCTTCCACAGATTACCAAGAAATCTGTCACATGAAAAAGAAAACTGTGGAGTTTAACTTGAACATTCCAGAGAGCCCCACAGAACATCTTCAACAGCGCCGTTTGGACCAGATGTCAACCAATATACAGGCTCTAATGAAGGAGCATGCAGAGTCCTATCCCTACag ctatccatgctagatagcataatcaagacatgcctgtgcctttctttcaggtGACGGTCCATCCACTGATTACCAAGAGATTCGACACATGAAGAAGAAGACTGTGGAATCTAACTTGAACATTCCGGAGAGCCCCTCAGAACATCTTCAACAGCGCCGTTTGGATCAGATGTCCACTAATATACGGGCACTAATGAAACAGCATGCAGAGTCCTATCCGTATaggtgggaatatctctagtcagtgggggcttcattcccttctggagacatta Alignment from Spaln_aa2Genome GTGATGGGCCTTCCACAGATTACCAAGAAATCTGTCACATGAAAAAGAAAACTGTGGAGTTTAACTTGAACATTCCAGAGAGCCCCACAGAACATCTTCAACAGCGCCGTTTGGACCAGATGTCAACCAATATACAGGCTCTAATGAAGGAGCATGCAGAGTCCTATCCCTACAG ctatccatgctagatagcataatcaagacatgcctgtgcctttctttcagGTGACGGTCCATCCACTGATTACCAAGAGATTCGACACATGAAGAAGAAGACTGTGGAATCTAACTTGAACATTCCGGAGAGCCCCTCAGAACATCTTCAACAGCGCCGTTTGGATCAGATGTCCACTAATATACGGGCACTAATGAAACAGCATGCAGAGTCCTATCCGTATAGgtgggaatatctctagtcagtgggggcttcattcccttctggagacatta Alignment from Spaln_nt2Genome GTGATGGGCCTTCCACAGATTACCAAGAAATCTGTCACATGAAAAAGAAAACTGTGGAGTTTAACTTGAACATTCCAGAGAGCCCCACAGAACATCTTCAACAGCGCCGTTTGGACCAGATGTCAACCAATATACAGGCTCTAATGAAGGAGCATGCAGAGTCCTATCCCTACAG ctatccatgctagatagcataatcaagacatgcctgtgcctttctttcagGTGACGGTCCATCCACTGATTACCAAGAGATTCGACACATGAAGAAGAAGACTGTGGAATCTAACTTGAACATTCCGGAGAGCCCCTCAGAACATCTTCAACAGCGCCGTTTGGATCAGATGTCCACTAATATACGGGCACTAATGAAACAGCATGCAGAGTCCTATCCGTATAGgtgggaatatctctagtcagtgggggcttcattcccttctggagacatta Alignment from Pairagon GTGATGGGCCTTCCACAGATTACCAAGAAATCTGTCACATGAAAAAGAAAACTGTGGAGTTTAACTTGAACATTCCAGAGAGCCCCACAGAACATCTTCAACAGCGCCGTTTGGACCAGATGTCAACCAATATACAGGCTCTAATGAAGGAGCATGCAGAGTCCTATCCCTACAG ctatccatgctagatagcataatcaagacatgcctgtgcctttctttcagGTGACGGTCCATCCACTGATTACCAAGAGATTCGACACATGAAGAAGAAGACTGTGGAATCTAACTTGAACATTCCGGAGAGCCCCTCAGAACATCTTCAACAGCGCCGTTTGGATCAGATGTCCACTAATATACGGGCACTAATGAAACAGCATGCAGAGTCCTATCCGTATAGgtgggaatatctctagtcagtgggggcttcattcccttctggagacatta Alignment from Exonerate_protein2genome GTGATGGGCCTTCCACAGATTACCAAGAAATCTGTCACATGAAAAAGAAAACTGTGGAGTTTAACTTGAACATTCCAGAGAGCCCCACAGAACATCTTCAACAGCGCCGTTTGGACCAGATGTCAACCAATATACAGGCTCTAATGAAGGAGCATGCAGAGTCCTATCCCTACAG ctatccatgctagatagcataatcaagacatgcctgtgcctttctttcagGTGACGGTCCATCCACTGATTACCAAGAGATTCGACACATGAAGAAGAAGACTGTGGAATCTAACTTGAACATTCCGGAGAGCCCCTCAGAACATCTTCAACAGCGCCGTTTGGATCAGATGTCCACTAATATACGGGCACTAATGAAACAGCATGCAGAGTCCTATCCGTATAGgtgggaatatctctagtcagtgggggcttcattcccttctggagacatta Alignment from Exonerate_coding2genome GTGATGGGCCTTCCACAGATTACCAAGAAATCTGTCACATGAAAAAGAAAACTGTGGAGTTTAACTTGAACATTCCAGAGAGCCCCACAGAACATCTTCAACAGCGCCGTTTGGACCAGATGTCAACCAATATACAGGCTCTAATGAAGGAGCATGCAGAGTCCTATCCCTACAG ctatccatgctagatagcataatcaagacatgcctgtgcctttctttcagGTGACGGTCCATCCACTGATTACCAAGAGATTCGACACATGAAGAAGAAGACTGTGGAATCTAACTTGAACATTCCGGAGAGCCCCTCAGAACATCTTCAACAGCGCCGTTTGGATCAGATGTCCACTAATATACGGGCACTAATGAAACAGCATGCAGAGTCCTATCCGTATAGgtgggaatatctctagtcagtgggggcttcattcccttctggagacatta Alignment from GeneWise GTGATGGGCCTTCCACAGATTACCAAGAAATCTGTCACATGAAAAAGAAAACTGTGGAGTTTAACTTGAACATTCCAGAGAGCCCCACAGAACATCTTCAACAGCGCCGTTTGGACCAGATGTCAACCAATATACAGGCTCTAATGAAGGAGCATGCAGAGTCCTATCCCTACAGGGATGAA ctatccatgctagatagcataatcaagacatgcctgtgcctttctttcagGTGACGGTCCATCCACTGATTACCAAGAGATTCGACACATGAAGAAGAAGACTGTGGAATCTAACTTGAACATTCCGGAGAGCCCCTCAGAACATCTTCAACAGCGCCGTTTGGATCAGATGTCCACTAATATACGGGCACTAATGAAACAGCATGCAGAGTCCTATCCGTATAGGTGGGAAtatctctagtcagtgggggcttcattcccttctggagacatta #### Best1_ID2630_9 --> 1 - 1 Original Alignment cCTAAAGAAAGAAGACTTAGAGCTTTGGTCAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTTCTTAGGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGTGTTCTAAGAACCCCCTCCTCGAAGGCCAGTGTAAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAg gtgacagtgaggttttacgataaggtttttagagtctttggttttcacagcCTAAAGAAAGAAGATTCAGAGCTATGGTCCAAAGAAGAGGCTGACATGGAAAAGAAAGTAAGTGGGTACTGTAGCACCATTGGGTGCTTCCTTGGCCTAGAACCAAAAAATTACCATCTTCCCTTGAGGGACCTAAAGGCCAAGCTATTGTGTACTGAGAACTCACTTCTTGAGGGCCAGTTTAAGGATGCAACTCAAAAAAACCAGAAAGATGTTTGGAAGTTTAAG---GTGGACTTCTTAAAATGTGTCCCAAGGTTTAAAAGGAGAGGTGCCTACTGTGGGCCTCAGGCACCTAGCAGCCATCCTACTGAGCAGTCAGCATCCTCTAGCTCTCACACAggtgagggttgcttataatgtaatctaatacctatggtacctgtgtccagc Alignment from CESAR cCTAAAGAAAGAAGACTTAGAGCTTTGGTCAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTTCTTAGGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGTGTTCTAAGAACCCCCTCCTCGAAGGCCAGTGTAAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAg gtgacagtgaggttttacgataaggtttttagagtctttggttttcacagcCTAAAGAAAGAAGATTCAGAGCTATGGTCCAAAGAAGAGGCTGACATGGAAAAGAAAGTAAGTGGGTACTGTAGCACCATTGGGTGCTTCCTTGGCCTAGAACCAAAAAATTACCATCTTCCCTTGAGGGACCTAAAGGCCAAGCTATTGTGTACTGAGAACTCACTTCTTGAGGGCCAGTTTAAGGATGCAACTCAAAAAAACCAGAAAGATGTTTGGAAGTTTAAG---GTGGACTTCTTAAAATGTGTCCCAAGGTTTAAAAGGAGAGGTGCCTACTGTGGGCCTCAGGCACCTAGCAGCCATCCTACTGAGCAGTCAGCATCCTCTAGCTCTCACACAggtgagggttgcttataatgtaatctaatacctatggtacctgtgtccagc Alignment from Spaln_aa2Genome CCTAAAGAAAGAAGACTTAGAGCTTTGGTCAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTTCTTAGGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGTGTTCTAAGAACCCCCTCCTCGAAGGCCAGTGTAAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAG gtgacagtgaggttttacgataaggtttttagagtctttggttttcacagCCTAAAGAAAGAAGATTCAGAGCTATGGTCCAAAGAAGAGGCTGACATGGAAAAGAAAGTAAGTGGGTACTGTAGCACCATTGGGTGCTTCCTTGGCCTAGAACCAAAAAATTACCATCTTCCCTTGAGGGACCTAAAGGCCAAGCTATTGTGTACTGAGAACTCACTTCTTGAGGGCCAGTTTAAGGATGCAACTCAAAAAAACCAGAAAGATGTTTGGAAGTTTAAG---GTGGACTTCTTAAAATGTGTCCCAAGGTTTAAAAGGAGAGGTGCCTACTGTGGGCCTCAGGCACCTAGCAGCCATCCTACTGAGCAGTCAGCATCCTCTAGCTCTCACACAGgtgagggttgcttataatgtaatctaatacctatggtacctgtgtccagc Alignment from Spaln_nt2Genome CCTAAAGAAAGAAGACTTAGAGCTTTGGTCAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTTCTTAGGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGTGTTCTAAGAACCCCCTCCTCGAAGGCCAGTGTAAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAG gtgacagtgaggttttacgataaggtttttagagtctttggttttcacagCCTAAAGAAAGAAGATTCAGAGCTATGGTCCAAAGAAGAGGCTGACATGGAAAAGAAAGTAAGTGGGTACTGTAGCACCATTGGGTGCTTCCTTGGCCTAGAACCAAAAAATTACCATCTTCCCTTGAGGGACCTAAAGGCCAAGCTATTGTGTACTGAGAACTCACTTCTTGAGGGCCAGTTTAAGGATGCAACTCAAAAAAACCAGAAAGATGTTTGGAAGTTTAAGG---TGGACTTCTTAAAATGTGTCCCAAGGTTTAAAAGGAGAGGTGCCTACTGTGGGCCTCAGGCACCTAGCAGCCATCCTACTGAGCAGTCAGCATCCTCTAGCTCTCACACAGgtgagggttgcttataatgtaatctaatacctatggtacctgtgtccagc Alignment from Pairagon CCTAAAGAAAGAAGACTTAGAGCTTTGGTCAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTTCTTAGGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGTGTTCTAAGAACCCCCTCCTCGAAGGCCAGTGTAAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAG gtgacagtgaggttttacgataaggtttttagagtctttggttttcacagCCTAAAGAAAGAAGATTCAGAGCTATGGTCCAAAGAAGAGGCTGACATGGAAAAGAAAGTAAGTGGGTACTGTAGCACCATTGGGTGCTTCCTTGGCCTAGAACCAAAAAATTACCATCTTCCCTTGAGGGACCTAAAGGCCAAGCTATTGTGTACTGAGAACTCACTTCTTGAGGGCCAGTTTAAGGATGCAACTCAAAAAAACCAGAAAGATGTTTGGAAGTTTAAGG---TGGACTTCTTAAAATGTGTCCCAAGGTTTAAAAGGAGAGGTGCCTACTGTGGGCCTCAGGCACCTAGCAGCCATCCTACTGAGCAGTCAGCATCCTCTAGCTCTCACACAGgtgagggttgcttataatgtaatctaatacctatggtacctgtgtccagc Alignment from Exonerate_protein2genome CCTAAAGAAAGAAGACTTAGAGCTTTGGTCAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTTCTTAGGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGTGTTCTAAGAACCCCCTCCTCGAAGGCCAGTGTAAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAG gtgacagtgaggttttacgataaggtttttagagtctttggttttcacagCCTAAAGAAAGAAGATTCAGAGCTATGGTCCAAAGAAGAGGCTGACATGGAAAAGAAAGTAAGTGGGTACTGTAGCACCATTGGGTGCTTCCTTGGCCTAGAACCAAAAAATTACCATCTTCCCTTGAGGGACCTAAAGGCCAAGCTATTGTGTACTGAGAACTCACTTCTTGAGGGCCAGTTTAAGGATGCAACTCAAAAAAACCAGAAAGATGTTTGGAAGTTTAAG---GTGGACTTCTTAAAATGTGTCCCAAGGTTTAAAAGGAGAGGTGCCTACTGTGGGCCTCAGGCACCTAGCAGCCATCCTACTGAGCAGTCAGCATCCTCTAGCTCTCACACAGgtgagggttgcttataatgtaatctaatacctatggtacctgtgtccagc Alignment from Exonerate_coding2genome CCTAAAGAAAGAAGACTTAGAGCTTTGGTCAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTTCTTAGGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGTGTTCTAAGAACCCCCTCCTCGAAGGCCAGTGTAAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAG gtgacagtgaggttttacgataaggtttttagagtctttggttttcacagCCTAAAGAAAGAAGATTCAGAGCTATGGTCCAAAGAAGAGGCTGACATGGAAAAGAAAGTAAGTGGGTACTGTAGCACCATTGGGTGCTTCCTTGGCCTAGAACCAAAAAATTACCATCTTCCCTTGAGGGACCTAAAGGCCAAGCTATTGTGTACTGAGAACTCACTTCTTGAGGGCCAGTTTAAGGATGCAACTCAAAAAAACCAGAAAGATGTTTGGAAGTTTAAG---GTGGACTTCTTAAAATGTGTCCCAAGGTTTAAAAGGAGAGGTGCCTACTGTGGGCCTCAGGCACCTAGCAGCCATCCTACTGAGCAGTCAGCATCCTCTAGCTCTCACACAGgtgagggttgcttataatgtaatctaatacctatggtacctgtgtccagc Alignment from GeneWise CCTAAAGAAAGAAGACTTAGAGCTTTGGTCAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTTCTTAGGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGTGTTCTAAGAACCCCCTCCTCGAAGGCCAGTGTAAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAG gtgacagtgaggttttacgataaggtttttagagtctttggttttcacagCCTAAAGAAAGAAGATTCAGAGCTATGGTCCAAAGAAGAGGCTGACATGGAAAAGAAAGTAAGTGGGTACTGTAGCACCATTGGGTGCTTCCTTGGCCTAGAACCAAAAAATTACCATCTTCCCTTGAGGGACCTAAAGGCCAAGCTATTGTGTACTGAGAACTCACTTCTTGAGGGCCAGTTTAAGGATGCAACTCAAAAAAACCAGAAAGATGTTTGGAAGTTTAAG---GTGGACTTCTTAAAATGTGTCCCAAGGTTTAAAAGGAGAGGTGCCTACTGTGGGCCTCAGGCACCTAGCAGCCATCCTACTGAGCAGTCAGCATCCTCTAGCTCTCACACAGgtgagggttgcttataatgtaatctaatacctatggtacctgtgtccagc #### Best1_ID2632_7 --> 0 - 0 Original Alignment GTGGCAGAACAGCTCATCAACCCCTTCGGGGAGGACGATGATGATTTTGAGACTAACTGGATCATTGACAGAAACCTGCAG agtcattcttggggtctaagtcttcatccttttctttccctcttttgtagGTGGCAGAGCAACTCATCAACCCCTTTGGAGAAGATGATGATGACTTTGAAACAAACTGGATTATTGACAGAAACTTGCAAgtaagcgaggaattgggggaggtgtatgtgtatctagcacagctcttacc Alignment from CESAR GTGGCAGAACAGCTCATCAACCCCTTCGGGGAGGACGATGATGATTTTGAGACTAACTGGATCATTGACAGAAACCTGCAG agtcattcttggggtctaagtcttcatccttttctttccctcttttgtagGTGGCAGAGCAACTCATCAACCCCTTTGGAGAAGATGATGATGACTTTGAAACAAACTGGATTATTGACAGAAACTTGCAAgtaagcgaggaattgggggaggtgtatgtgtatctagcacagctcttacc Alignment from Spaln_aa2Genome GTGGCAGAACAGCTCATCAACCCCTTCGGGGAGGACGATGATGATTTTGAGACTAACTGGATCATTGACAGAAACCTGCAG agtcattcttggggtctaagtcttcatccttttctttccctcttttgtagGTGGCAGAGCAACTCATCAACCCCTTTGGAGAAGATGATGATGACTTTGAAACAAACTGGATTATTGACAGAAACTTGCAAgtaagcgaggaattgggggaggtgtatgtgtatctagcacagctcttacc Alignment from Spaln_nt2Genome GTGGCAGAACAGCTCATCAACCCCTTCGGGGAGGACGATGATGATTTTGAGACTAACTGGATCATTGACAGAAACCTGCAG agtcattcttggggtctaagtcttcatccttttctttccctcttttgtagGTGGCAGAGCAACTCATCAACCCCTTTGGAGAAGATGATGATGACTTTGAAACAAACTGGATTATTGACAGAAACTTGCAAgtaagcgaggaattgggggaggtgtatgtgtatctagcacagctcttacc Alignment from Pairagon GTGGCAGAACAGCTCATCAACCCCTTCGGGGAGGACGATGATGATTTTGAGACTAACTGGATCATTGACAGAAACCTGCAG agtcattcttggggtctaagtcttcatccttttctttccctcttttgtagGTGGCAGAGCAACTCATCAACCCCTTTGGAGAAGATGATGATGACTTTGAAACAAACTGGATTATTGACAGAAACTTGCAAgtaagcgaggaattgggggaggtgtatgtgtatctagcacagctcttacc Alignment from Exonerate_protein2genome GTGGCAGAACAGCTCATCAACCCCTTCGGGGAGGACGATGATGATTTTGAGACTAACTGGATCATTGACAGAAACCTGCAG agtcattcttggggtctaagtcttcatccttttctttccctcttttgtagGTGGCAGAGCAACTCATCAACCCCTTTGGAGAAGATGATGATGACTTTGAAACAAACTGGATTATTGACAGAAACTTGCAAgtaagcgaggaattgggggaggtgtatgtgtatctagcacagctcttacc Alignment from Exonerate_coding2genome GTGGCAGAACAGCTCATCAACCCCTTCGGGGAGGACGATGATGATTTTGAGACTAACTGGATCATTGACAGAAACCTGCAG agtcattcttggggtctaagtcttcatccttttctttccctcttttgtagGTGGCAGAGCAACTCATCAACCCCTTTGGAGAAGATGATGATGACTTTGAAACAAACTGGATTATTGACAGAAACTTGCAAgtaagcgaggaattgggggaggtgtatgtgtatctagcacagctcttacc Alignment from GeneWise GTGGCAGAACAGCTCATCAACCCCTTCGGGGAGGACGATGATGATTTTGAGACTAACTGGATCATTGACAGAAACCTGCAG agtcattcttggggtctaagtcttcatccttttctttccctcttttgtagGTGGCAGAGCAACTCATCAACCCCTTTGGAGAAGATGATGATGACTTTGAAACAAACTGGATTATTGACAGAAACTTGCAAgtaagcgaggaattgggggaggtgtatgtgtatctagcacagctcttacc #### Best1_ID2633_6 --> 0 - 0 Original Alignment GTGGTGACAGTGGCAGTATACAGCTTTTTCCTTGCATGCTTGATCGGGAGGCAGTTTCTGAACCCAAACAAGGACTACCCAGGCCATGAGATGGATCTGGTTGTGCCTGTCTTCACAATCCTGCAATTCTTATTCTACATGGGCTGGCTGAAG gagttgctcactatactctcccttcctacccagcagttgctcatctccagGTGGTGGCAGTAGCATTATACAGCTTTTTCCTTGCATGTTTGATTAAGAGACAGTTTCTGAACCCTAACAAGGATTACCCTGGACATGAGATGGACCTAGTTGAGCCAGTCTTCAGAATCCTCCAATTCTTATTCTACATGGACTGGCTGAAAgtaagtttcccactcaccgccctcttgaaggatacacagggtgccctgct Alignment from CESAR GTGGTGACAGTGGCAGTATACAGCTTTTTCCTTGCATGCTTGATCGGGAGGCAGTTTCTGAACCCAAACAAGGACTACCCAGGCCATGAGATGGATCTGGTTGTGCCTGTCTTCACAATCCTGCAATTCTTATTCTACATGGGCTGGCTGAAG gagttgctcactatactctcccttcctacccagcagttgctcatctccagGTGGTGGCAGTAGCATTATACAGCTTTTTCCTTGCATGTTTGATTAAGAGACAGTTTCTGAACCCTAACAAGGATTACCCTGGACATGAGATGGACCTAGTTGAGCCAGTCTTCAGAATCCTCCAATTCTTATTCTACATGGACTGGCTGAAAgtaagtttcccactcaccgccctcttgaaggatacacagggtgccctgct Alignment from Spaln_aa2Genome GTGGTGACAGTGGCAGTATACAGCTTTTTCCTTGCATGCTTGATCGGGAGGCAGTTTCTGAACCCAAACAAGGACTACCCAGGCCATGAGATGGATCTGGTTGTGCCTGTCTTCACAATCCTGCAATTCTTATTCTACATGGGCTGGCTGAAG gagttgctcactatactctcccttcctacccagcagttgctcatctccagGTGGTGGCAGTAGCATTATACAGCTTTTTCCTTGCATGTTTGATTAAGAGACAGTTTCTGAACCCTAACAAGGATTACCCTGGACATGAGATGGACCTAGTTGAGCCAGTCTTCAGAATCCTCCAATTCTTATTCTACATGGACTGGCTGAAAgtaagtttcccactcaccgccctcttgaaggatacacagggtgccctgct Alignment from Spaln_nt2Genome GTGGTGACAGTGGCAGTATACAGCTTTTTCCTTGCATGCTTGATCGGGAGGCAGTTTCTGAACCCAAACAAGGACTACCCAGGCCATGAGATGGATCTGGTTGTGCCTGTCTTCACAATCCTGCAATTCTTATTCTACATGGGCTGGCTGAAG gagttgctcactatactctcccttcctacccagcagttgctcatctccagGTGGTGGCAGTAGCATTATACAGCTTTTTCCTTGCATGTTTGATTAAGAGACAGTTTCTGAACCCTAACAAGGATTACCCTGGACATGAGATGGACCTAGTTGAGCCAGTCTTCAGAATCCTCCAATTCTTATTCTACATGGACTGGCTGAAAgtaagtttcccactcaccgccctcttgaaggatacacagggtgccctgct Alignment from Pairagon GTGGTGACAGTGGCAGTATACAGCTTTTTCCTTGCATGCTTGATCGGGAGGCAGTTTCTGAACCCAAACAAGGACTACCCAGGCCATGAGATGGATCTGGTTGTGCCTGTCTTCACAATCCTGCAATTCTTATTCTACATGGGCTGGCTGAAG gagttgctcactatactctcccttcctacccagcagttgctcatctccagGTGGTGGCAGTAGCATTATACAGCTTTTTCCTTGCATGTTTGATTAAGAGACAGTTTCTGAACCCTAACAAGGATTACCCTGGACATGAGATGGACCTAGTTGAGCCAGTCTTCAGAATCCTCCAATTCTTATTCTACATGGACTGGCTGAAAgtaagtttcccactcaccgccctcttgaaggatacacagggtgccctgct Alignment from Exonerate_protein2genome GTGGTGACAGTGGCAGTATACAGCTTTTTCCTTGCATGCTTGATCGGGAGGCAGTTTCTGAACCCAAACAAGGACTACCCAGGCCATGAGATGGATCTGGTTGTGCCTGTCTTCACAATCCTGCAATTCTTATTCTACATGGGCTGGCTGAAG gagttgctcactatactctcccttcctacccagcagttgctcatctccagGTGGTGGCAGTAGCATTATACAGCTTTTTCCTTGCATGTTTGATTAAGAGACAGTTTCTGAACCCTAACAAGGATTACCCTGGACATGAGATGGACCTAGTTGAGCCAGTCTTCAGAATCCTCCAATTCTTATTCTACATGGACTGGCTGAAAgtaagtttcccactcaccgccctcttgaaggatacacagggtgccctgct Alignment from Exonerate_coding2genome GTGGTGACAGTGGCAGTATACAGCTTTTTCCTTGCATGCTTGATCGGGAGGCAGTTTCTGAACCCAAACAAGGACTACCCAGGCCATGAGATGGATCTGGTTGTGCCTGTCTTCACAATCCTGCAATTCTTATTCTACATGGGCTGGCTGAAG gagttgctcactatactctcccttcctacccagcagttgctcatctccagGTGGTGGCAGTAGCATTATACAGCTTTTTCCTTGCATGTTTGATTAAGAGACAGTTTCTGAACCCTAACAAGGATTACCCTGGACATGAGATGGACCTAGTTGAGCCAGTCTTCAGAATCCTCCAATTCTTATTCTACATGGACTGGCTGAAAgtaagtttcccactcaccgccctcttgaaggatacacagggtgccctgct Alignment from GeneWise GTGGTGACAGTGGCAGTATACAGCTTTTTCCTTGCATGCTTGATCGGGAGGCAGTTTCTGAACCCAAACAAGGACTACCCAGGCCATGAGATGGATCTGGTTGTGCCTGTCTTCACAATCCTGCAATTCTTATTCTACATGGGCTGGCTGAAG gagttgctcactatactctcccttcctacccagcagttgctcatctccagGTGGTGGCAGTAGCATTATACAGCTTTTTCCTTGCATGTTTGATTAAGAGACAGTTTCTGAACCCTAACAAGGATTACCCTGGACATGAGATGGACCTAGTTGAGCCAGTCTTCAGAATCCTCCAATTCTTATTCTACATGGACTGGCTGAAAgtaagtttcccactcaccgccctcttgaaggatacacagggtgccctgct #### Best1_ID2637_2 --> 1 - 1 Original Alignment aATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGg tcacagtgcaagtaaaagcttagagaatgtttgtgtctgtcaatccgcagaATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGGTGGCTCTGTACTGTGCTAGCTACATTGAGCTCATCCCAATAGCGTTTGTCCTAggtgctcgcttgttgtagctctagtactatcatactatctctacctggctt Alignment from CESAR aATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGg tcacagtgcaagtaaaagcttagagaatgtttgtgtctgtcaatccgcagaATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGGTGGCTCTGTACTGTGCTAGCTACATTGAGCTCATCCCAATAGCGTTTGTCCTAggtgctcgcttgttgtagctctagtactatcatactatctctacctggctt Alignment from Spaln_aa2Genome AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG tcacagtgcaagtaaaagcttagagaatgtttgtgtctgtcaatccgcagAATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGGTGGCTCTGTACTGTGCTAGCTACATTGAGCTCATCCCAATAGCGTTTGTCCTAGgtgctcgcttgttgtagctctagtactatcatactatctctacctggctt Alignment from Spaln_nt2Genome AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG tcacagtgcaagtaaaagcttagagaatgtttgtgtctgtcaatccgcagAATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGGTGGCTCTGTACTGTGCTAGCTACATTGAGCTCATCCCAATAGCGTTTGTCCTAGgtgctcgcttgttgtagctctagtactatcatactatctctacctggctt Alignment from Pairagon AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG tcacagtgcaagtaaaagcttagagaatgtttgtgtctgtcaatccgcagAATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGGTGGCTCTGTACTGTGCTAGCTACATTGAGCTCATCCCAATAGCGTTTGTCCTAGgtgctcgcttgttgtagctctagtactatcatactatctctacctggctt Alignment from Exonerate_protein2genome AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG tcacagtgcaagtaaaagcttagagaatgtttgtgtctgtcaatccgcagAATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGGTGGCTCTGTACTGTGCTAGCTACATTGAGCTCATCCCAATAGCGTTTGTCCTAGgtgctcgcttgttgtagctctagtactatcatactatctctacctggctt Alignment from Exonerate_coding2genome AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG tcacagtgcaagtaaaagcttagagaatgtttgtgtctgtcaatccgcagAATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGGTGGCTCTGTACTGTGCTAGCTACATTGAGCTCATCCCAATAGCGTTTGTCCTAGgtgctcgcttgttgtagctctagtactatcatactatctctacctggctt Alignment from GeneWise AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG tcacagtgcaagtaaaagcttagagaatgtttgtgtctgtcaatccgcagAATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGGTGGCTCTGTACTGTGCTAGCTACATTGAGCTCATCCCAATAGCGTTTGTCCTAGgtgctcgcttgttgtagctctagtactatcatactatctctacctggctt #### Blnk_ID8062_9 --> 2 - 2 Original Alignment gtCGAAACAGTGGGGTCTGGGACTCCAAGTCATCTTTGCCTGCCGCACCATCCCCACTACCACGGGCTgg gcccatcatagcatcagcttagtgtgtggaggtctccctttctctcacaggtCGAAACAGTGGGGTTTGGGACTCCAAGTCATGCCTACCTGCTGCACCATCCCCCCTGCCACGGACTgggtcagttttaatttaggatactggtctcagtaagtttctgcccatagaag Alignment from CESAR gtCGAAACAGTGGGGTCTGGGACTCCAAGTCATCTTTGCCTGCCGCACCATCCCCACTACCACGGGCTgg gcccatcatagcatcagcttagtgtgtggaggtctccctttctctcacaggtCGAAACAGTGGGGTTTGGGACTCCAAGTCATGCCTACCTGCTGCACCATCCCCCCTGCCACGGACTgggtcagttttaatttaggatactggtctcagtaagtttctgcccatagaag Alignment from Spaln_aa2Genome GTCGAAACAGTGGGGTCTGGGACTCCAAGTCATCTTTGCCTGCCGCACCATCCCCACTACCACGGGCTGG gcccatcatagcatcagcttagtgtgtggaggtctccctttctctcacagGTCGAAACAGTGGGGTTTGGGACTCCAAGTCATGCCTACCTGCTGCACCATCCCCCCTGCCACGGACTGGgtcagttttaatttaggatactggtctcagtaagtttctgcccatagaag Alignment from Spaln_nt2Genome GTCGAAACAGTGGGGTCTGGGACTCCAAGTCATCTTTGCCTGCCGCACCATCCCCACTACCACGGGCTGG gcccatcatagcatcagcttagtgtgtggaggtctccctttctctcacagGTCGAAACAGTGGGGTTTGGGACTCCAAGTCATGCCTACCTGCTGCACCATCCCCCCTGCCACGGACTGGgtcagttttaatttaggatactggtctcagtaagtttctgcccatagaag Alignment from Pairagon GTCGAAACAGTGGGGTCTGGGACTCCAAGTCATCTTTGCCTGCCGCACCATCCCCACTACCACGGGCTGG gcccatcatagcatcagcttagtgtgtggaggtctccctttctctcacagGTCGAAACAGTGGGGTTTGGGACTCCAAGTCATGCCTACCTGCTGCACCATCCCCCCTGCCACGGACTGGgtcagttttaatttaggatactggtctcagtaagtttctgcccatagaag Alignment from Exonerate_protein2genome GTCGAAACAGTGGGGTCTGGGACTCCAAGTCATCTTTGCCTGCCGCACCATCCCCACTACCACGGGCTGG gcccatcatagcatcagcttagtgtgtggaggtctccctttctctcacagGTCGAAACAGTGGGGTTTGGGACTCCAAGTCATGCCTACCTGCTGCACCATCCCCCCTGCCACGGACTGGgtcagttttaatttaggatactggtctcagtaagtttctgcccatagaag Alignment from Exonerate_coding2genome GTCGAAACAGTGGGGTCTGGGACTCCAAGTCATCTTTGCCTGCCGCACCATCCCCACTACCACGGGCTGGGAAGAAG gcccatcatagcatcagcttagtgtgtggaggtctccctttctctcacagGTCGAAACAGTGGGGTTTGGGACTCCAAGTCATGCCTACCTGCTGCACCATCCCCCCTGCCACGGACTGGGTCAGTTttaatttaggatactggtctcagtaagtttctgcccatagaag Alignment from GeneWise GTCGAAACAGTGGGGTCTGGGACTCCAAGTCATCTTTGCCTGCCGCACCATCCCCACTACCACGGGCTGGGAAG gcccatcatagcatcagcttagtgtgtggaggtctccctttctctcacagGTCGAAACAGTGGGGTTTGGGACTCCAAGTCATGCCTACCTGCTGCACCATCCCCCCTGCCACGGACTGGGTCAgttttaatttaggatactggtctcagtaagtttctgcccatagaag #### Blnk_ID8064_7 --> 0 - 1 Original Alignment GCTGATTATGTGGTCCCTGTGGAAGATAACGATGAAAACTATATCCATCCCAGAGAAAGCAGCCCGCCGCCTGCTGAGAAGg actaagattgtatataccatacagtttctcaccttccctgtgtcatccagGCTGATTATGTGGTCCCTGTTGAGGACAATGGTAAGAACTATATCCACCCCAGAGAAAGCAGCTCACCACCCGCTGAGAAAggtaggactctgagcctgaggtatgtgaaggcctgaagaccccatgctttg Alignment from CESAR GCTGATTATGTGGTCCCTGTGGAAGATAACGATGAAAACTATATCCATCCCAGAGAAAGCAGCCCGCCGCCTGCTGAGAAGg actaagattgtatataccatacagtttctcaccttccctgtgtcatccagGCTGATTATGTGGTCCCTGTTGAGGACAATGGTAAGAACTATATCCACCCCAGAGAAAGCAGCTCACCACCCGCTGAGAAAggtaggactctgagcctgaggtatgtgaaggcctgaagaccccatgctttg Alignment from Spaln_aa2Genome GCTGATTATGTGGTCCCTGTGGAAGATAACGATGAAAACTATATCCATCCCAGAGAAAGCAGCCCGCCGCCTGCTGAGAAGG actaagattgtatataccatacagtttctcaccttccctgtgtcatccagGCTGATTATGTGGTCCCTGTTGAGGACAATGGTAAGAACTATATCCACCCCAGAGAAAGCAGCTCACCACCCGCTGAGAAAGgtaggactctgagcctgaggtatgtgaaggcctgaagaccccatgctttg Alignment from Spaln_nt2Genome GCTGATTATGTGGTCCCTGTGGAAGATAACGATGAAAACTATATCCATCCCAGAGAAAGCAGCCCGCCGCCTGCTGAGAAGG actaagattgtatataccatacagtttctcaccttccctgtgtcatccagGCTGATTATGTGGTCCCTGTTGAGGACAATGGTAAGAACTATATCCACCCCAGAGAAAGCAGCTCACCACCCGCTGAGAAAGgtaggactctgagcctgaggtatgtgaaggcctgaagaccccatgctttg Alignment from Pairagon GCTGATTATGTGGTCCCTGTGGAAGATAACGATGAAAACTATATCCATCCCAGAGAAAGCAGCCCGCCGCCTGCTGAGAAGG actaagattgtatataccatacagtttctcaccttccctgtgtcatccagGCTGATTATGTGGTCCCTGTTGAGGACAATGGTAAGAACTATATCCACCCCAGAGAAAGCAGCTCACCACCCGCTGAGAAAGgtaggactctgagcctgaggtatgtgaaggcctgaagaccccatgctttg Alignment from Exonerate_protein2genome GCTGATTATGTGGTCCCTGTGGAAGATAACGATGAAAACTATATCCATCCCAGAGAAAGCAGCCCGCCGCCTGCTGAGAAGG actaagattgtatataccatacagtttctcaccttccctgtgtcatccagGCTGATTATGTGGTCCCTGTTGAGGACAATGGTAAGAACTATATCCACCCCAGAGAAAGCAGCTCACCACCCGCTGAGAAAGgtaggactctgagcctgaggtatgtgaaggcctgaagaccccatgctttg Alignment from Exonerate_coding2genome GCTGATTATGTGGTCCCTGTGGAAGATAACGATGAAAACTATATCCATCCCAGAGAAAGCAGCCCGCCGCCTGCTGAGAAGG actaagattgtatataccatacagtttctcaccttccctgtgtcatccagGCTGATTATGTGGTCCCTGTTGAGGACAATGGTAAGAACTATATCCACCCCAGAGAAAGCAGCTCACCACCCGCTGAGAAAGgtaggactctgagcctgaggtatgtgaaggcctgaagaccccatgctttg Alignment from GeneWise GCTGATTATGTGGTCCCTGTGGAAGATAACGATGAAAACTATATCCATCCCAGAGAAAGCAGCCCGCCGCCTGCTGAGAAGG actaagattgtatataccatacagtttctcaccttccctgtgtcatccagGCTGATTATGTGGTCCCTGTTGAGGACAATGGTAAGAACTATATCCACCCCAGAGAAAGCAGCTCACCACCCGCTGAGAAAGgtaggactctgagcctgaggtatgtgaaggcctgaagaccccatgctttg #### Blnk_ID8066_5 --> 0 - 1 Original Alignment GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAg acctactgtgcagtctggcagttgaggaacggttgggttgtcttttccagGACAGTGACTATGAAAATCCAGATGAACATTCAGACTCTGAGATGTATGTGATGCCTGCTGAGGAGACAGGAGATGATTCCTATGAACCACCTCCTGCTGAGCAGCAGACACGGGTGGTCCATCCAGCACTGCCCTTCACAAGGGGTGAGTATGTAggtgagttggtagtattactggaaacataagaaagggaacaccaggccagg Alignment from CESAR GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAg acctactgtgcagtctggcagttgaggaacggttgggttgtcttttccagGACAGTGACTATGAAAATCCAGATGAACATTCAGACTCTGAGATGTATGTGATGCCTGCTGAGGAGACAGGAGATGATTCCTATGAACCACCTCCTGCTGAGCAGCAGACACGGGTGGTCCATCCAGCACTGCCCTTCACAAGGGGTGAGTATGTAggtgagttggtagtattactggaaacataagaaagggaacaccaggccagg Alignment from Spaln_aa2Genome GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAG acctactgtgcagtctggcagttgaggaacggttgggttgtcttttccagGACAGTGACTATGAAAATCCAGATGAACATTCAGACTCTGAGATGTATGTGATGCCTGCTGAGGAGACAGGAGATGATTCCTATGAACCACCTCCTGCTGAGCAGCAGACACGGGTGGTCCATCCAGCACTGCCCTTCACAAGGGGTGAGTATGTAGgtgagttggtagtattactggaaacataagaaagggaacaccaggccagg Alignment from Spaln_nt2Genome GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAG acctactgtgcagtctggcagttgaggaacggttgggttgtcttttccagGACAGTGACTATGAAAATCCAGATGAACATTCAGACTCTGAGATGTATGTGATGCCTGCTGAGGAGACAGGAGATGATTCCTATGAACCACCTCCTGCTGAGCAGCAGACACGGGTGGTCCATCCAGCACTGCCCTTCACAAGGGGTGAGTATGTAGgtgagttggtagtattactggaaacataagaaagggaacaccaggccagg Alignment from Pairagon GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAG acctactgtgcagtctggcagttgaggaacggttgggttgtcttttccagGACAGTGACTATGAAAATCCAGATGAACATTCAGACTCTGAGATGTATGTGATGCCTGCTGAGGAGACAGGAGATGATTCCTATGAACCACCTCCTGCTGAGCAGCAGACACGGGTGGTCCATCCAGCACTGCCCTTCACAAGGGGTGAGTATGTAGgtgagttggtagtattactggaaacataagaaagggaacaccaggccagg Alignment from Exonerate_protein2genome GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAG acctactgtgcagtctggcagttgaggaacggttgggttgtcttttccagGACAGTGACTATGAAAATCCAGATGAACATTCAGACTCTGAGATGTATGTGATGCCTGCTGAGGAGACAGGAGATGATTCCTATGAACCACCTCCTGCTGAGCAGCAGACACGGGTGGTCCATCCAGCACTGCCCTTCACAAGGGGTGAGTATGTAGgtgagttggtagtattactggaaacataagaaagggaacaccaggccagg Alignment from Exonerate_coding2genome GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAG acctactgtgcagtctggcagttgaggaacggttgggttgtcttttccagGACAGTGACTATGAAAATCCAGATGAACATTCAGACTCTGAGATGTATGTGATGCCTGCTGAGGAGACAGGAGATGATTCCTATGAACCACCTCCTGCTGAGCAGCAGACACGGGTGGTCCATCCAGCACTGCCCTTCACAAGGGGTGAGTATGTAGgtgagttggtagtattactggaaacataagaaagggaacaccaggccagg Alignment from GeneWise GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAG acctactgtgcagtctggcagttgaggaacggttgggttgtcttttccagGACAGTGACTATGAAAATCCAGATGAACATTCAGACTCTGAGATGTATGTGATGCCTGCTGAGGAGACAGGAGATGATTCCTATGAACCACCTCCTGCTGAGCAGCAGACACGGGTGGTCCATCCAGCACTGCCCTTCACAAGGGGTGAGTATGTAGgtgagttggtagtattactggaaacataagaaagggaacaccaggccagg #### Blnk_ID8067_4 --> 2 - 0 Original Alignment acAGCCCTGCAGATGAA---GAGGAGCAGTGGTCAGATGACTTC ggtcccaagggccacttagtttaggaaaaatcctctgttcctgtctgtagaaAGTCCTGCAGATCAGGAAGAGGAGCAGTGGCCAGATGACTTTgtatgtggcttctagtaccaggaaaatactggacatttgcatggcctact Alignment from CESAR acAGCCCTGCAGAT---GAAGAGGAGCAGTGGTCAGATGACTTC ggtcccaagggccacttagtttaggaaaaatcctctgttcctgtctgtagaaAGTCCTGCAGATCAGGAAGAGGAGCAGTGGCCAGATGACTTTgtatgtggcttctagtaccaggaaaatactggacatttgcatggcctact Alignment from Spaln_aa2Genome ACAGCCCTGCAGAT---GAAGAGGAGCAGTGGTCAGATGACTTC ggtcccaagggccacttagtttaggaaaaatcctctgttcctgtctgtagAAAGTCCTGCAGATCAGGAAGAGGAGCAGTGGCCAGATGACTTTgtatgtggcttctagtaccaggaaaatactggacatttgcatggcctact Alignment from Spaln_nt2Genome ACAGCCCTGCAGAT---GAAGAGGAGCAGTGGTCAGATGACTTC ggtcccaagggccacttagtttaggaaaaatcctctgttcctgtctgtagAAAGTCCTGCAGATCAGGAAGAGGAGCAGTGGCCAGATGACTTTgtatgtggcttctagtaccaggaaaatactggacatttgcatggcctact Alignment from Pairagon ACAGCCCTGCAGAT---GAAGAGGAGCAGTGGTCAGATGACTTC ggtcccaagggccacttagtttaggaaaaatcctctgttcctgtctgtagAAAGTCCTGCAGATCAGGAAGAGGAGCAGTGGCCAGATGACTTTgtatgtggcttctagtaccaggaaaatactggacatttgcatggcctact Alignment from Exonerate_protein2genome ACAGCCCTGCAGAT---GAAGAGGAGCAGTGGTCAGATGACTTC ggtcccaagggccacttagtttaggaaaaatcctctgttcctgtctgtagAAAGTCCTGCAGATCAGGAAGAGGAGCAGTGGCCAGATGACTTTgtatgtggcttctagtaccaggaaaatactggacatttgcatggcctact Alignment from Exonerate_coding2genome ggtcccaagggccacttagtttaggaaaaatcctctgttcctgtctgtagaaagtcctgcagatcaggaagaggagcagtggccagatgactttgtatgtggcttctagtaccaggaaaatactggacatttgcatggcctact Alignment from GeneWise ACAGCCCTGCAGAT---GAAGAGGAGCAGTGGTCAGATGACTTC ggtcccaagggccacttagtttaggaaaaatcctctgttcctgtctgtagAAAGTCCTGCAGATCAGGAAGAGGAGCAGTGGCCAGATGACTTTgtatgtggcttctagtaccaggaaaatactggacatttgcatggcctact #### Blnk_ID8069_2 --> 1 - 2 Original Alignment aCAGCTTCAAAAGATGGTCCATGATATTAAGAACAATGAAGGTGGAATAATGGACAAGATAAAAaa gtaggtagtattcaatagtggttttgcttttctttgttttttatttgcagaCAGCTTCAAGAGATGGTCCATGATATTAAAAACAATGAAGGTGGAATAATGGACAAGATAAAGatgtaagagaatcactagccagtctgtgtgttgtatcatcaaatctggcttt Alignment from CESAR aCAGCTTCAAAAGATGGTCCATGATATTAAGAACAATGAAGGTGGAATAATGGACAAGATAAAAaa gtaggtagtattcaatagtggttttgcttttctttgttttttatttgcagaCAGCTTCAAGAGATGGTCCATGATATTAAAAACAATGAAGGTGGAATAATGGACAAGATAAAGatgtaagagaatcactagccagtctgtgtgttgtatcatcaaatctggcttt Alignment from Spaln_aa2Genome ACAGCTTCAAAAGATGGTCCATGATATTAAGAACAATGAAGGTGGAATAATGGACAAGATAAAAAA gtaggtagtattcaatagtggttttgcttttctttgttttttatttgcagACAGCTTCAAGAGATGGTCCATGATATTAAAAACAATGAAGGTGGAATAATGGACAAGATAAAGATgtaagagaatcactagccagtctgtgtgttgtatcatcaaatctggcttt Alignment from Spaln_nt2Genome ACAGCTTCAAAAGATGGTCCATGATATTAAGAACAATGAAGGTGGAATAATGGACAAGATAAAAAA gtaggtagtattcaatagtggttttgcttttctttgttttttatttgcagACAGCTTCAAGAGATGGTCCATGATATTAAAAACAATGAAGGTGGAATAATGGACAAGATAAAGATgtaagagaatcactagccagtctgtgtgttgtatcatcaaatctggcttt Alignment from Pairagon ACAGCTTCAAAAGATGGTCCATGATATTAAGAACAATGAAGGTGGAATAATGGACAAGATAAAAAA gtaggtagtattcaatagtggttttgcttttctttgttttttatttgcagACAGCTTCAAGAGATGGTCCATGATATTAAAAACAATGAAGGTGGAATAATGGACAAGATAAAGATgtaagagaatcactagccagtctgtgtgttgtatcatcaaatctggcttt Alignment from Exonerate_protein2genome ACAGCTTCAAAAGATGGTCCATGATATTAAGAACAATGAAGGTGGAATAATGGACAAGATAAAAAA gtaggtagtattcaatagtggttttgcttttctttgttttttatttgcagACAGCTTCAAGAGATGGTCCATGATATTAAAAACAATGAAGGTGGAATAATGGACAAGATAAAGATgtaagagaatcactagccagtctgtgtgttgtatcatcaaatctggcttt Alignment from Exonerate_coding2genome AGACAGCTTCAAAAGATGGTCCATGATATTAAGAACAATGAAGGTGGAATAATGGACAAGATAAAAAA gtaggtagtattcaatagtggttttgcttttctttgttttttatttgcAGACAGCTTCAAGAGATGGTCCATGATATTAAAAACAATGAAGGTGGAATAATGGACAAGATAAAGATgtaagagaatcactagccagtctgtgtgttgtatcatcaaatctggcttt Alignment from GeneWise gtaggtagtattcaatagtggttttgcttttctttgttttttatttgcagacagcttcaagagatggtccatgatattaaaaacaatgaaggtggaataatggacaagataaagatgtaagagaatcactagccagtctgtgtgttgtatcatcaaatctggcttt #### Bloc1s2_ID8949_2 --> 2 - 1 Original Alignment atGATGCTGCGGTGGAGACAGCCGAGGAAGCAAAGGAGCCTGCCGAAGCTGACATCAATGAGCTCTGCCGGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTGACAg gacaggtctagatggggccatcccctcagtatttttgatttgtccctcagatGACGCTGCAGTGGAGACAGCTGAGGAAGCTAAAGAGCCTGCTGAAGCGGACATCAATGAGCTCTGTCAGGACATGTTCTCCAAAATGTCCACATACTTGGCTGGGGAGCTGACAggtaagttgaggtacctttgtggacagcacaggcctctcggccacaaaggg Alignment from CESAR atGATGCTGCGGTGGAGACAGCCGAGGAAGCAAAGGAGCCTGCCGAAGCTGACATCAATGAGCTCTGCCGGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTGACAg gacaggtctagatggggccatcccctcagtatttttgatttgtccctcagatGACGCTGCAGTGGAGACAGCTGAGGAAGCTAAAGAGCCTGCTGAAGCGGACATCAATGAGCTCTGTCAGGACATGTTCTCCAAAATGTCCACATACTTGGCTGGGGAGCTGACAggtaagttgaggtacctttgtggacagcacaggcctctcggccacaaaggg Alignment from Spaln_aa2Genome ATGATGCTGCGGTGGAGACAGCCGAGGAAGCAAAGGAGCCTGCCGAAGCTGACATCAATGAGCTCTGCCGGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTGACAG gacaggtctagatggggccatcccctcagtatttttgatttgtccctcagATGACGCTGCAGTGGAGACAGCTGAGGAAGCTAAAGAGCCTGCTGAAGCGGACATCAATGAGCTCTGTCAGGACATGTTCTCCAAAATGTCCACATACTTGGCTGGGGAGCTGACAGgtaagttgaggtacctttgtggacagcacaggcctctcggccacaaaggg Alignment from Spaln_nt2Genome ATGATGCTGCGGTGGAGACAGCCGAGGAAGCAAAGGAGCCTGCCGAAGCTGACATCAATGAGCTCTGCCGGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTGACAG gacaggtctagatggggccatcccctcagtatttttgatttgtccctcagATGACGCTGCAGTGGAGACAGCTGAGGAAGCTAAAGAGCCTGCTGAAGCGGACATCAATGAGCTCTGTCAGGACATGTTCTCCAAAATGTCCACATACTTGGCTGGGGAGCTGACAGgtaagttgaggtacctttgtggacagcacaggcctctcggccacaaaggg Alignment from Pairagon AGATGATGCTGCGGTGGAGACAGCCGAGGAAGCAAAGGAGCCTGCCGAAGCTGACATCAATGAGCTCTGCCGGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTGACAG gacaggtctagatggggccatcccctcagtatttttgatttgtccctcAGATGACGCTGCAGTGGAGACAGCTGAGGAAGCTAAAGAGCCTGCTGAAGCGGACATCAATGAGCTCTGTCAGGACATGTTCTCCAAAATGTCCACATACTTGGCTGGGGAGCTGACAGgtaagttgaggtacctttgtggacagcacaggcctctcggccacaaaggg Alignment from Exonerate_protein2genome CCTCGAGATGATGCTGCGGTGGAGACAGCCGAGGAAGCAAAGGAGCCTGCCGAAGCTGACATCAATGAGCTCTGCCGGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTGACAG gacaggtctagatggggccatcccctcagtatttttgatttgtCCCTCAGATGACGCTGCAGTGGAGACAGCTGAGGAAGCTAAAGAGCCTGCTGAAGCGGACATCAATGAGCTCTGTCAGGACATGTTCTCCAAAATGTCCACATACTTGGCTGGGGAGCTGACAGgtaagttgaggtacctttgtggacagcacaggcctctcggccacaaaggg Alignment from Exonerate_coding2genome CCTCGAGATGATGCTGCGGTGGAGACAGCCGAGGAAGCAAAGGAGCCTGCCGAAGCTGACATCAATGAGCTCTGCCGGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTGACAG gacaggtctagatggggccatcccctcagtatttttgatttgtCCCTCAGATGACGCTGCAGTGGAGACAGCTGAGGAAGCTAAAGAGCCTGCTGAAGCGGACATCAATGAGCTCTGTCAGGACATGTTCTCCAAAATGTCCACATACTTGGCTGGGGAGCTGACAGgtaagttgaggtacctttgtggacagcacaggcctctcggccacaaaggg Alignment from GeneWise CCTCGAGATGATGCTGCGGTGGAGACAGCCGAGGAAGCAAAGGAGCCTGCCGAAGCTGACATCAATGAGCTCTGCCGGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTGACAG gacaggtctagatggggccatcccctcagtatttttgatttgtCCCTCAGATGACGCTGCAGTGGAGACAGCTGAGGAAGCTAAAGAGCCTGCTGAAGCGGACATCAATGAGCTCTGTCAGGACATGTTCTCCAAAATGTCCACATACTTGGCTGGGGAGCTGACAGgtaagttgaggtacctttgtggacagcacaggcctctcggccacaaaggg #### Bscl2_ID2419_2 --> 0 - 2 Original Alignment GAACCTTCAGCTGCCCTATCCCATGGCCAAGGGTATCGTCCCTGTGGAAGACCAGCCAGGAACTCAAAGCCTGAGGCTGGGGCCAGACCCCCTGCTGTCCCCATCATGGTCAATGACCCACCAGTCCCCGCCTTACTGTGGGCCCAGGAAGTGGGCCACGTCTTGGCAGGCCGTGCCCGCAGGCTGATGCTGCAGTTTGGGGTGCTCTTCTGCACCATCCTTCTTTTGCTTTGGGTGTCTGTGTTCCTCTATGGCTCCTTCTACTACTCCTACATGCCGACGGTCAGCCACCTCAGCCCTGTGCACTTCCACTACag tactcacagtccccccctctctgtagcgtttcctctccccgcacccccagGAACATTCAGCTGCTCTCTCACATGGCCAAGGATATCGTCCCTGTGGTAGGCCAGCTAGGAACTCAAAACCTGAGGCTGGGACCAGACCCCCTGCTGTCCCTATTACAGTCAATGACCCACCAGTCCCTGCCTTACTGTGGGCTCAAGAAGTGGGCCACGTCTTGACAGGCCGTGCCCGCAAGCTGATGCTGCAGTTTGGGGTGCCCTTATGTACCATTCTCCTTTTGCTTTGGGTGTCAGTATTCCTCTATGGTTCATGCTACTATTCATACATGCCAATGGTAAGTCACCTCAGTCCAGTGCACTTCCACTACaggtaagtctgtcagaatacacccttgctgcttgattcaaggaggcctgcct Alignment from CESAR GAACCTTCAGCTGCCCTATCCCATGGCCAAGGGTATCGTCCCTGTGGAAGACCAGCCAGGAACTCAAAGCCTGAGGCTGGGGCCAGACCCCCTGCTGTCCCCATCATGGTCAATGACCCACCAGTCCCCGCCTTACTGTGGGCCCAGGAAGTGGGCCACGTCTTGGCAGGCCGTGCCCGCAGGCTGATGCTGCAGTTTGGGGTGCTCTTCTGCACCATCCTTCTTTTGCTTTGGGTGTCTGTGTTCCTCTATGGCTCCTTCTACTACTCCTACATGCCGACGGTCAGCCACCTCAGCCCTGTGCACTTCCACTACag tactcacagtccccccctctctgtagcgtttcctctccccgcacccccagGAACATTCAGCTGCTCTCTCACATGGCCAAGGATATCGTCCCTGTGGTAGGCCAGCTAGGAACTCAAAACCTGAGGCTGGGACCAGACCCCCTGCTGTCCCTATTACAGTCAATGACCCACCAGTCCCTGCCTTACTGTGGGCTCAAGAAGTGGGCCACGTCTTGACAGGCCGTGCCCGCAAGCTGATGCTGCAGTTTGGGGTGCCCTTATGTACCATTCTCCTTTTGCTTTGGGTGTCAGTATTCCTCTATGGTTCATGCTACTATTCATACATGCCAATGGTAAGTCACCTCAGTCCAGTGCACTTCCACTACaggtaagtctgtcagaatacacccttgctgcttgattcaaggaggcctgcct Alignment from Spaln_aa2Genome GAACCTTCAGCTGCCCTATCCCATGGCCAAGGGTATCGTCCCTGTGGAAGACCAGCCAGGAACTCAAAGCCTGAGGCTGGGGCCAGACCCCCTGCTGTCCCCATCATGGTCAATGACCCACCAGTCCCCGCCTTACTGTGGGCCCAGGAAGTGGGCCACGTCTTGGCAGGCCGTGCCCGCAGGCTGATGCTGCAGTTTGGGGTGCTCTTCTGCACCATCCTTCTTTTGCTTTGGGTGTCTGTGTTCCTCTATGGCTCCTTCTACTACTCCTACATGCCGACGGTCAGCCACCTCAGCCCTGTGCACTTCCACTACAG tactcacagtccccccctctctgtagcgtttcctctccccgcacccccagGAACATTCAGCTGCTCTCTCACATGGCCAAGGATATCGTCCCTGTGGTAGGCCAGCTAGGAACTCAAAACCTGAGGCTGGGACCAGACCCCCTGCTGTCCCTATTACAGTCAATGACCCACCAGTCCCTGCCTTACTGTGGGCTCAAGAAGTGGGCCACGTCTTGACAGGCCGTGCCCGCAAGCTGATGCTGCAGTTTGGGGTGCCCTTATGTACCATTCTCCTTTTGCTTTGGGTGTCAGTATTCCTCTATGGTTCATGCTACTATTCATACATGCCAATGGTAAGTCACCTCAGTCCAGTGCACTTCCACTACAGgtaagtctgtcagaatacacccttgctgcttgattcaaggaggcctgcct Alignment from Spaln_nt2Genome GAACCTTCAGCTGCCCTATCCCATGGCCAAGGGTATCGTCCCTGTGGAAGACCAGCCAGGAACTCAAAGCCTGAGGCTGGGGCCAGACCCCCTGCTGTCCCCATCATGGTCAATGACCCACCAGTCCCCGCCTTACTGTGGGCCCAGGAAGTGGGCCACGTCTTGGCAGGCCGTGCCCGCAGGCTGATGCTGCAGTTTGGGGTGCTCTTCTGCACCATCCTTCTTTTGCTTTGGGTGTCTGTGTTCCTCTATGGCTCCTTCTACTACTCCTACATGCCGACGGTCAGCCACCTCAGCCCTGTGCACTTCCACTACAG tactcacagtccccccctctctgtagcgtttcctctccccgcacccccagGAACATTCAGCTGCTCTCTCACATGGCCAAGGATATCGTCCCTGTGGTAGGCCAGCTAGGAACTCAAAACCTGAGGCTGGGACCAGACCCCCTGCTGTCCCTATTACAGTCAATGACCCACCAGTCCCTGCCTTACTGTGGGCTCAAGAAGTGGGCCACGTCTTGACAGGCCGTGCCCGCAAGCTGATGCTGCAGTTTGGGGTGCCCTTATGTACCATTCTCCTTTTGCTTTGGGTGTCAGTATTCCTCTATGGTTCATGCTACTATTCATACATGCCAATGGTAAGTCACCTCAGTCCAGTGCACTTCCACTACAGgtaagtctgtcagaatacacccttgctgcttgattcaaggaggcctgcct Alignment from Pairagon GAACCTTCAGCTGCCCTATCCCATGGCCAAGGGTATCGTCCCTGTGGAAGACCAGCCAGGAACTCAAAGCCTGAGGCTGGGGCCAGACCCCCTGCTGTCCCCATCATGGTCAATGACCCACCAGTCCCCGCCTTACTGTGGGCCCAGGAAGTGGGCCACGTCTTGGCAGGCCGTGCCCGCAGGCTGATGCTGCAGTTTGGGGTGCTCTTCTGCACCATCCTTCTTTTGCTTTGGGTGTCTGTGTTCCTCTATGGCTCCTTCTACTACTCCTACATGCCGACGGTCAGCCACCTCAGCCCTGTGCACTTCCACTACAG tactcacagtccccccctctctgtagcgtttcctctccccgcacccccagGAACATTCAGCTGCTCTCTCACATGGCCAAGGATATCGTCCCTGTGGTAGGCCAGCTAGGAACTCAAAACCTGAGGCTGGGACCAGACCCCCTGCTGTCCCTATTACAGTCAATGACCCACCAGTCCCTGCCTTACTGTGGGCTCAAGAAGTGGGCCACGTCTTGACAGGCCGTGCCCGCAAGCTGATGCTGCAGTTTGGGGTGCCCTTATGTACCATTCTCCTTTTGCTTTGGGTGTCAGTATTCCTCTATGGTTCATGCTACTATTCATACATGCCAATGGTAAGTCACCTCAGTCCAGTGCACTTCCACTACAGgtaagtctgtcagaatacacccttgctgcttgattcaaggaggcctgcct Alignment from Exonerate_protein2genome GAACCTTCAGCTGCCCTATCCCATGGCCAAGGGTATCGTCCCTGTGGAAGACCAGCCAGGAACTCAAAGCCTGAGGCTGGGGCCAGACCCCCTGCTGTCCCCATCATGGTCAATGACCCACCAGTCCCCGCCTTACTGTGGGCCCAGGAAGTGGGCCACGTCTTGGCAGGCCGTGCCCGCAGGCTGATGCTGCAGTTTGGGGTGCTCTTCTGCACCATCCTTCTTTTGCTTTGGGTGTCTGTGTTCCTCTATGGCTCCTTCTACTACTCCTACATGCCGACGGTCAGCCACCTCAGCCCTGTGCACTTCCACTACAG tactcacagtccccccctctctgtagcgtttcctctccccgcacccccagGAACATTCAGCTGCTCTCTCACATGGCCAAGGATATCGTCCCTGTGGTAGGCCAGCTAGGAACTCAAAACCTGAGGCTGGGACCAGACCCCCTGCTGTCCCTATTACAGTCAATGACCCACCAGTCCCTGCCTTACTGTGGGCTCAAGAAGTGGGCCACGTCTTGACAGGCCGTGCCCGCAAGCTGATGCTGCAGTTTGGGGTGCCCTTATGTACCATTCTCCTTTTGCTTTGGGTGTCAGTATTCCTCTATGGTTCATGCTACTATTCATACATGCCAATGGTAAGTCACCTCAGTCCAGTGCACTTCCACTACAGgtaagtctgtcagaatacacccttgctgcttgattcaaggaggcctgcct Alignment from Exonerate_coding2genome GAACCTTCAGCTGCCCTATCCCATGGCCAAGGGTATCGTCCCTGTGGAAGACCAGCCAGGAACTCAAAGCCTGAGGCTGGGGCCAGACCCCCTGCTGTCCCCATCATGGTCAATGACCCACCAGTCCCCGCCTTACTGTGGGCCCAGGAAGTGGGCCACGTCTTGGCAGGCCGTGCCCGCAGGCTGATGCTGCAGTTTGGGGTGCTCTTCTGCACCATCCTTCTTTTGCTTTGGGTGTCTGTGTTCCTCTATGGCTCCTTCTACTACTCCTACATGCCGACGGTCAGCCACCTCAGCCCTGTGCACTTCCACTACAG tactcacagtccccccctctctgtagcgtttcctctccccgcacccccagGAACATTCAGCTGCTCTCTCACATGGCCAAGGATATCGTCCCTGTGGTAGGCCAGCTAGGAACTCAAAACCTGAGGCTGGGACCAGACCCCCTGCTGTCCCTATTACAGTCAATGACCCACCAGTCCCTGCCTTACTGTGGGCTCAAGAAGTGGGCCACGTCTTGACAGGCCGTGCCCGCAAGCTGATGCTGCAGTTTGGGGTGCCCTTATGTACCATTCTCCTTTTGCTTTGGGTGTCAGTATTCCTCTATGGTTCATGCTACTATTCATACATGCCAATGGTAAGTCACCTCAGTCCAGTGCACTTCCACTACAGgtaagtctgtcagaatacacccttgctgcttgattcaaggaggcctgcct Alignment from GeneWise GAACCTTCAGCTGCCCTATCCCATGGCCAAGGGTATCGTCCCTGTGGAAGACCAGCCAGGAACTCAAAGCCTGAGGCTGGGGCCAGACCCCCTGCTGTCCCCATCATGGTCAATGACCCACCAGTCCCCGCCTTACTGTGGGCCCAGGAAGTGGGCCACGTCTTGGCAGGCCGTGCCCGCAGGCTGATGCTGCAGTTTGGGGTGCTCTTCTGCACCATCCTTCTTTTGCTTTGGGTGTCTGTGTTCCTCTATGGCTCCTTCTACTACTCCTACATGCCGACGGTCAGCCACCTCAGCCCTGTGCACTTCCACTACAG tactcacagtccccccctctctgtagcgtttcctctccccgcacccccagGAACATTCAGCTGCTCTCTCACATGGCCAAGGATATCGTCCCTGTGGTAGGCCAGCTAGGAACTCAAAACCTGAGGCTGGGACCAGACCCCCTGCTGTCCCTATTACAGTCAATGACCCACCAGTCCCTGCCTTACTGTGGGCTCAAGAAGTGGGCCACGTCTTGACAGGCCGTGCCCGCAAGCTGATGCTGCAGTTTGGGGTGCCCTTATGTACCATTCTCCTTTTGCTTTGGGTGTCAGTATTCCTCTATGGTTCATGCTACTATTCATACATGCCAATGGTAAGTCACCTCAGTCCAGTGCACTTCCACTACAGgtaagtctgtcagaatacacccttgctgcttgattcaaggaggcctgcct #### Bscl2_ID2423_6 --> 0 - 2 Original Alignment TATGTGCCAACAACTGGAGCAATTATTGAGATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCag cctcaatgtagccagaatcacatgtagacatctcctcctcttcctctcagTATGTTCCAACAACTGGAGCAATTATTGAAATTCACAGTAAACGCATTGAGATGTATGGAGCCTACCTCTGGATCCATGCCCACTTTACAGGGCTCaggtaagcaaagtgtagaagggacaacttttctacaatatggcccaaatagt Alignment from CESAR TATGTGCCAACAACTGGAGCAATTATTGAGATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCag cctcaatgtagccagaatcacatgtagacatctcctcctcttcctctcagTATGTTCCAACAACTGGAGCAATTATTGAAATTCACAGTAAACGCATTGAGATGTATGGAGCCTACCTCTGGATCCATGCCCACTTTACAGGGCTCaggtaagcaaagtgtagaagggacaacttttctacaatatggcccaaatagt Alignment from Spaln_aa2Genome TATGTGCCAACAACTGGAGCAATTATTGAGATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCAG cctcaatgtagccagaatcacatgtagacatctcctcctcttcctctcagTATGTTCCAACAACTGGAGCAATTATTGAAATTCACAGTAAACGCATTGAGATGTATGGAGCCTACCTCTGGATCCATGCCCACTTTACAGGGCTCAGgtaagcaaagtgtagaagggacaacttttctacaatatggcccaaatagt Alignment from Spaln_nt2Genome TATGTGCCAACAACTGGAGCAATTATTGAGATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCAG cctcaatgtagccagaatcacatgtagacatctcctcctcttcctctcagTATGTTCCAACAACTGGAGCAATTATTGAAATTCACAGTAAACGCATTGAGATGTATGGAGCCTACCTCTGGATCCATGCCCACTTTACAGGGCTCAGgtaagcaaagtgtagaagggacaacttttctacaatatggcccaaatagt Alignment from Pairagon TATGTGCCAACAACTGGAGCAATTATTGAGATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCAG cctcaatgtagccagaatcacatgtagacatctcctcctcttcctctcagTATGTTCCAACAACTGGAGCAATTATTGAAATTCACAGTAAACGCATTGAGATGTATGGAGCCTACCTCTGGATCCATGCCCACTTTACAGGGCTCAGgtaagcaaagtgtagaagggacaacttttctacaatatggcccaaatagt Alignment from Exonerate_protein2genome TCGTATGTGCCAACAACTGGAGCAATTATTGAGATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCAG cctcaatgtagccagaatcacatgtagacatctcctcctcttcctctcag---TATGTTCCAACAACTGGAGCAATTATTGAAATTCACAGTAAACGCATTGAGATGTATGGAGCCTACCTCTGGATCCATGCCCACTTTACAGGGCTCAGgtaagcaaagtgtagaagggacaacttttctacaatatggcccaaatagt Alignment from Exonerate_coding2genome TCGTATGTGCCAACAACTGGAGCAATTATTGAGATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCAG cctcaatgtagccagaatcacatgtagacatctcctcctcttcctctcag---TATGTTCCAACAACTGGAGCAATTATTGAAATTCACAGTAAACGCATTGAGATGTATGGAGCCTACCTCTGGATCCATGCCCACTTTACAGGGCTCAGgtaagcaaagtgtagaagggacaacttttctacaatatggcccaaatagt Alignment from GeneWise TATGTGCCAACAACTGGAGCAATTATTGAGATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCAG cctcaatgtagccagaatcacatgtagacatctcctcctcttcctctcagTATGTTCCAACAACTGGAGCAATTATTGAAATTCACAGTAAACGCATTGAGATGTATGGAGCCTACCTCTGGATCCATGCCCACTTTACAGGGCTCAGgtaagcaaagtgtagaagggacaacttttctacaatatggcccaaatagt #### Bscl2_ID2425_8 --> 0 - 1 Original Alignment GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAg ccagtataggatcacaactcattggttgaagcaccttttctctctctcagGTTAATACATGTCAAAGGGACAACTCACAGCACGGA------GACCATATTTCACACCACCAACCAggtaagcgaattaggcattaggaatttggaaatagaccagggattccttca Alignment from CESAR GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAg ccagtataggatcacaactcattggttgaagcaccttttctctctctcagGTTAATACATGTCAAAGGGACAACTCACAGCACGGAGAC------CATATTTCACACCACCAACCAggtaagcgaattaggcattaggaatttggaaatagaccagggattccttca Alignment from Spaln_aa2Genome GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG ccagtataggatcacaactcattggttgaagcaccttttctctctctcagGTTAATACATGTCAAAGGGACAACTCACAGCACGGAGAC------CATATTTCACACCACCAACCAGgtaagcgaattaggcattaggaatttggaaatagaccagggattccttca Alignment from Spaln_nt2Genome GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG ccagtataggatcacaactcattggttgaagcaccttttctctctctcagGTTAATACATGTCAAAGGGACAACTCACAGCACGGAGAC------CATATTTCACACCACCAACCAGgtaagcgaattaggcattaggaatttggaaatagaccagggattccttca Alignment from Pairagon GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG ccagtataggatcacaactcattggttgaagcaccttttctctctctcagGTTAATACATGTCAAAGGGACAACTCACAGCACGGAGAC------CATATTTCACACCACCAACCAGgtaagcgaattaggcattaggaatttggaaatagaccagggattccttca Alignment from Exonerate_protein2genome ATCAGCCAGGTCAGGAATCTACCCAGCAGTCGGATGTGACG---GAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAGAGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGAT CCAGTATAGGATCACAACTCATTGGTTGAAGCACCTTTTCTCTCTCTCAGGTTAATACATGTCAAAGGGACAACTCACAGCACGGAGACCATATTTCACACCACCAACCAGGTAAGCGAATTAGGCATTAGGAATTTGGAAATAGACCAGGGATTCCTTCA Alignment from Exonerate_coding2genome ATCAGCCAGGTCAGGAATCTACCCAGCAGTCGGATGTGACG---GAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAGAGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGAT CCAGTATAGGATCACAACTCATTGGTTGAAGCACCTTTTCTCTCTCTCAGGTTAATACATGTCAAAGGGACAACTCACAGCACGGAGACCATATTTCACACCACCAACCAGGTAAGCGAATTAGGCATTAGGAATTTGGAAATAGACCAGGGATTCCTTCA Alignment from GeneWise GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG ccagtataggatcacaactcattggttgaagcaccttttctctctctcagGTTAATACATGTCAAAGGGACAACTCACAGCACGGA------GACCATATTTCACACCACCAACCAGgtaagcgaattaggcattaggaatttggaaatagaccagggattccttca #### Bscl2_ID2426_9 --> 2 - 1 Original Alignment gtCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAg agtgttaggtccttgtgttgggggtaaaaataaagtcttttactgcacaggtCAGAAATCCACCCAGCAGTCAGATGTTATGGAGGATGGTGAGAGCCCTGAAGATCCCTCAAGAACAggtaaggtcaggctccctaacatctttattgagatagattttcagttctgg Alignment from CESAR gtCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAg agtgttaggtccttgtgttgggggtaaaaataaagtcttttactgcacaggtCAGAAATCCACCCAGCAGTCAGATGTTATGGAGGATGGTGAGAGCCCTGAAGATCCCTCAAGAACAggtaaggtcaggctccctaacatctttattgagatagattttcagttctgg Alignment from Spaln_aa2Genome GTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAG agtgttaggtccttgtgttgggggtaaaaataaagtcttttactgcacagGTCAGAAATCCACCCAGCAGTCAGATGTTATGGAGGATGGTGAGAGCCCTGAAGATCCCTCAAGAACAGgtaaggtcaggctccctaacatctttattgagatagattttcagttctgg Alignment from Spaln_nt2Genome GTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAG agtgttaggtccttgtgttgggggtaaaaataaagtcttttactgcacagGTCAGAAATCCACCCAGCAGTCAGATGTTATGGAGGATGGTGAGAGCCCTGAAGATCCCTCAAGAACAGgtaaggtcaggctccctaacatctttattgagatagattttcagttctgg Alignment from Pairagon GTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAG agtgttaggtccttgtgttgggggtaaaaataaagtcttttactgcacagGTCAGAAATCCACCCAGCAGTCAGATGTTATGGAGGATGGTGAGAGCCCTGAAGATCCCTCAAGAACAGgtaaggtcaggctccctaacatctttattgagatagattttcagttctgg Alignment from Exonerate_protein2genome GGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAGGTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACA AGTGTTAGGTCCTTGTGTTGGGGGTAAAAATAAAGTCTTTTACTGCACAGGTCAGAAATCCACCCAGCAGTCAGATGTTATGGAGGATGGTGAGAGCCCTGAAGATCCCTCAAGAACAggtaaggtcaggctccctaacatctttattgagatagattttcagttctgg Alignment from Exonerate_coding2genome GGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAGGTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACA AGTGTTAGGTCCTTGTGTTGGGGGTAAAAATAAAGTCTTTTACTGCACAGGTCAGAAATCCACCCAGCAGTCAGATGTTATGGAGGATGGTGAGAGCCCTGAAGATCCCTCAAGAACAggtaaggtcaggctccctaacatctttattgagatagattttcagttctgg Alignment from GeneWise GTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAG agtgttaggtccttgtgttgggggtaaaaataaagtcttttactgcacagGTCAGAAATCCACCCAGCAGTCAGATGTTATGGAGGATGGTGAGAGCCCTGAAGATCCCTCAAGAACAGgtaaggtcaggctccctaacatctttattgagatagattttcagttctgg #### Btaf1_ID7219_3 --> 0 - 1 Original Alignment GTATTAATATATTTAAGGAGTACAAATTGGGATACCCGGATTGCAGCAGGACAAGCTGTTGAAGCTATAGTGAAAAACGTGCCTGAGTGGAATCCAGTGCCAAGAACCAAACAAg tgagaattggatttcataataaatccctaaaatgatttttccccccctagGTAATTATATTTTTAAGGAGTACAAATTGGGATACACGGATCGCAACAGGGCAAGCTGTTGAAGCTATAGTCAAAAATGTGCCTGGGTGGAATCCAGTGCCAAGAACCAAACAAggtaagtttgaagtgagtagaccaatcaactacacccaagcatcctgaggc Alignment from CESAR GTATTAATATATTTAAGGAGTACAAATTGGGATACCCGGATTGCAGCAGGACAAGCTGTTGAAGCTATAGTGAAAAACGTGCCTGAGTGGAATCCAGTGCCAAGAACCAAACAAg tgagaattggatttcataataaatccctaaaatgatttttccccccctagGTAATTATATTTTTAAGGAGTACAAATTGGGATACACGGATCGCAACAGGGCAAGCTGTTGAAGCTATAGTCAAAAATGTGCCTGGGTGGAATCCAGTGCCAAGAACCAAACAAggtaagtttgaagtgagtagaccaatcaactacacccaagcatcctgaggc Alignment from Spaln_aa2Genome GGTATTAATATATTTAAGGAGTACAAATTGGGATACCCGGATTGCAGCAGGACAAGCTGTTGAAGCTATAGTGAAAAACGTGCCTGAGTGGAATCCAGTGCCAAGAACCAAACAAGAAC tgagaattggatttcataataaatccctaaaatgatttttccccccctagGTAATTATATTTTTAAGGAGTACAAATTGGGATACACGGATCGCAACAGGGCAAGCTGTTGAAGCTATAGTCAAAAATGTGCCTGGGTGGAATCCAGTGCCAAGAACCAAACAAGGTAAgtttgaagtgagtagaccaatcaactacacccaagcatcctgaggc Alignment from Spaln_nt2Genome GTATTAATATATTTAAGGAGTACAAATTGGGATACCCGGATTGCAGCAGGACAAGCTGTTGAAGCTATAGTGAAAAACGTGCCTGAGTGGAATCCAGTGCCAAGAACCAAACAAG tgagaattggatttcataataaatccctaaaatgatttttccccccctagGTAATTATATTTTTAAGGAGTACAAATTGGGATACACGGATCGCAACAGGGCAAGCTGTTGAAGCTATAGTCAAAAATGTGCCTGGGTGGAATCCAGTGCCAAGAACCAAACAAGgtaagtttgaagtgagtagaccaatcaactacacccaagcatcctgaggc Alignment from Pairagon GTATTAATATATTTAAGGAGTACAAATTGGGATACCCGGATTGCAGCAGGACAAGCTGTTGAAGCTATAGTGAAAAACGTGCCTGAGTGGAATCCAGTGCCAAGAACCAAACAAG tgagaattggatttcataataaatccctaaaatgatttttccccccctagGTAATTATATTTTTAAGGAGTACAAATTGGGATACACGGATCGCAACAGGGCAAGCTGTTGAAGCTATAGTCAAAAATGTGCCTGGGTGGAATCCAGTGCCAAGAACCAAACAAGgtaagtttgaagtgagtagaccaatcaactacacccaagcatcctgaggc Alignment from Exonerate_protein2genome GTATTAATATATTTAAGGAGTACAAATTGGGATACCCGGATTGCAGCAGGACAAGCTGTTGAAGCTATAGTGAAAAACGTGCCTGAGTGGAATCCAGTGCCAAGAACCAAACAAG tgagaattggatttcataataaatccctaaaatgatttttccccccctagGTAATTATATTTTTAAGGAGTACAAATTGGGATACACGGATCGCAACAGGGCAAGCTGTTGAAGCTATAGTCAAAAATGTGCCTGGGTGGAATCCAGTGCCAAGAACCAAACAAGgtaagtttgaagtgagtagaccaatcaactacacccaagcatcctgaggc Alignment from Exonerate_coding2genome GTATTAATATATTTAAGGAGTACAAATTGGGATACCCGGATTGCAGCAGGACAAGCTGTTGAAGCTATAGTGAAAAACGTGCCTGAGTGGAATCCAGTGCCAAGAACCAAACAAG tgagaattggatttcataataaatccctaaaatgatttttccccccctagGTAATTATATTTTTAAGGAGTACAAATTGGGATACACGGATCGCAACAGGGCAAGCTGTTGAAGCTATAGTCAAAAATGTGCCTGGGTGGAATCCAGTGCCAAGAACCAAACAAGgtaagtttgaagtgagtagaccaatcaactacacccaagcatcctgaggc Alignment from GeneWise GTATTAATATATTTAAGGAGTACAAATTGGGATACCCGGATTGCAGCAGGACAAGCTGTTGAAGCTATAGTGAAAAACGTGCCTGAGTGGAATCCAGTGCCAAGAACCAAACAAGAACC tgagaattggatttcataataaatccctaaaatgatttttccccccctagGTAATTATATTTTTAAGGAGTACAAATTGGGATACACGGATCGCAACAGGGCAAGCTGTTGAAGCTATAGTCAAAAATGTGCCTGGGTGGAATCCAGTGCCAAGAACCAAACAAGGTAAgtttgaagtgagtagaccaatcaactacacccaagcatcctgaggc #### Btaf1_ID7225_8 --> 0 - 0 Original Alignment ACAAATGAATGGCCTTTGGAAAGCTTTTGTGAAGAACTTTGCAATGACCTTTTTAATCCCTCCTGGGAG aggcaatgtgttatcaatgatctaaggttagccttcccaccactccacagATGAACGAATGGCCATTAGAGGGTTTTTGTGAAGAACTTTGCAATGTCCTTTTTAATCCCTCGTGGGAAgtacgtcatgtaagacatagtactgtcagcagtgaaggcagtctacttaa Alignment from CESAR ACAAATGAATGGCCTTTGGAAAGCTTTTGTGAAGAACTTTGCAATGACCTTTTTAATCCCTCCTGGGAG aggcaatgtgttatcaatgatctaaggttagccttcccaccactccacagATGAACGAATGGCCATTAGAGGGTTTTTGTGAAGAACTTTGCAATGTCCTTTTTAATCCCTCGTGGGAAgtacgtcatgtaagacatagtactgtcagcagtgaaggcagtctacttaa Alignment from Spaln_aa2Genome GACAAATGAATGGCCTTTGGAAAGCTTTTGTGAAGAACTTTGCAATGACCTTTTTAATCCCTCCTGGGA aggcaatgtgttatcaatgatctaaggttagccttcccaccactccacagATGAACGAATGGCCATTAGAGGGTTTTTGTGAAGAACTTTGCAATGTCCTTTTTAATCCCTCGTGGGAAgtacgtcatgtaagacatagtactgtcagcagtgaaggcagtctacttaa Alignment from Spaln_nt2Genome ACAAATGAATGGCCTTTGGAAAGCTTTTGTGAAGAACTTTGCAATGACCTTTTTAATCCCTCCTGGGAG aggcaatgtgttatcaatgatctaaggttagccttcccaccactccacagATGAACGAATGGCCATTAGAGGGTTTTTGTGAAGAACTTTGCAATGTCCTTTTTAATCCCTCGTGGGAAgtacgtcatgtaagacatagtactgtcagcagtgaaggcagtctacttaa Alignment from Pairagon ACAAATGAATGGCCTTTGGAAAGCTTTTGTGAAGAACTTTGCAATGACCTTTTTAATCCCTCCTGGGAG aggcaatgtgttatcaatgatctaaggttagccttcccaccactccacagATGAACGAATGGCCATTAGAGGGTTTTTGTGAAGAACTTTGCAATGTCCTTTTTAATCCCTCGTGGGAAgtacgtcatgtaagacatagtactgtcagcagtgaaggcagtctacttaa Alignment from Exonerate_protein2genome ACAAATGAATGGCCTTTGGAAAGCTTTTGTGAAGAACTTTGCAATGACCTTTTTAATCCCTCCTGGGAG aggcaatgtgttatcaatgatctaaggttagccttcccaccactccacagATGAACGAATGGCCATTAGAGGGTTTTTGTGAAGAACTTTGCAATGTCCTTTTTAATCCCTCGTGGGAAgtacgtcatgtaagacatagtactgtcagcagtgaaggcagtctacttaa Alignment from Exonerate_coding2genome ACAAATGAATGGCCTTTGGAAAGCTTTTGTGAAGAACTTTGCAATGACCTTTTTAATCCCTCCTGGGAG aggcaatgtgttatcaatgatctaaggttagccttcccaccactccacagATGAACGAATGGCCATTAGAGGGTTTTTGTGAAGAACTTTGCAATGTCCTTTTTAATCCCTCGTGGGAAgtacgtcatgtaagacatagtactgtcagcagtgaaggcagtctacttaa Alignment from GeneWise ACAAATGAATGGCCTTTGGAAAGCTTTTGTGAAGAACTTTGCAATGACCTTTTTAATCCCTCCTGGGAG aggcaatgtgttatcaatgatctaaggttagccttcccaccactccacagATGAACGAATGGCCATTAGAGGGTTTTTGTGAAGAACTTTGCAATGTCCTTTTTAATCCCTCGTGGGAAgtacgtcatgtaagacatagtactgtcagcagtgaaggcagtctacttaa #### Btaf1_ID7233_15 --> 0 - 0 Original Alignment AACTCTTCATCTTGGCTCATACCTATCCTGTCGGATATGCTGAGACACATTTTTCAGTTTTGTGTTTTAGAAAGCAGCCAGGAAATTCTGGATCTTATTCACAAG atgtataacatgctggattccacatagctttgtcacctgtcaccctgcagAACTCCTCACCTTGGCTGATCCCTGTCTTGTCAGATATGTTAAGGCACAGCTTTAAGTGTGGTGTGTTGGAAAGTACTCAGGAAATTTTGGATCTCATTCATAAGgtaagcgacaagcgtccaaacaaattgtgatggatagttaattaatttct Alignment from CESAR AACTCTTCATCTTGGCTCATACCTATCCTGTCGGATATGCTGAGACACATTTTTCAGTTTTGTGTTTTAGAAAGCAGCCAGGAAATTCTGGATCTTATTCACAAG atgtataacatgctggattccacatagctttgtcacctgtcaccctgcagAACTCCTCACCTTGGCTGATCCCTGTCTTGTCAGATATGTTAAGGCACAGCTTTAAGTGTGGTGTGTTGGAAAGTACTCAGGAAATTTTGGATCTCATTCATAAGgtaagcgacaagcgtccaaacaaattgtgatggatagttaattaatttct Alignment from Spaln_aa2Genome GAACTCTTCATCTTGGCTCATACCTATCCTGTCGGATATGCTGAGACACATTTTTCAGTTTTGTGTTTTAGAAAGCAGCCAGGAAATTCTGGATCTTATTCACAA atgtataacatgctggattccacatagctttgtcacctgtcaccctgcagAACTCCTCACCTTGGCTGATCCCTGTCTTGTCAGATATGTTAAGGCACAGCTTTAAGTGTGGTGTGTTGGAAAGTACTCAGGAAATTTTGGATCTCATTCATAAGgtaagcgacaagcgtccaaacaaattgtgatggatagttaattaatttct Alignment from Spaln_nt2Genome AACTCTTCATCTTGGCTCATACCTATCCTGTCGGATATGCTGAGACACATTTTTCAGTTTTGTGTTTTAGAAAGCAGCCAGGAAATTCTGGATCTTATTCACAAG atgtataacatgctggattccacatagctttgtcacctgtcaccctgcagAACTCCTCACCTTGGCTGATCCCTGTCTTGTCAGATATGTTAAGGCACAGCTTTAAGTGTGGTGTGTTGGAAAGTACTCAGGAAATTTTGGATCTCATTCATAAGgtaagcgacaagcgtccaaacaaattgtgatggatagttaattaatttct Alignment from Pairagon AACTCTTCATCTTGGCTCATACCTATCCTGTCGGATATGCTGAGACACATTTTTCAGTTTTGTGTTTTAGAAAGCAGCCAGGAAATTCTGGATCTTATTCACAAG atgtataacatgctggattccacatagctttgtcacctgtcaccctgcagAACTCCTCACCTTGGCTGATCCCTGTCTTGTCAGATATGTTAAGGCACAGCTTTAAGTGTGGTGTGTTGGAAAGTACTCAGGAAATTTTGGATCTCATTCATAAGgtaagcgacaagcgtccaaacaaattgtgatggatagttaattaatttct Alignment from Exonerate_protein2genome AACTCTTCATCTTGGCTCATACCTATCCTGTCGGATATGCTGAGACACATTTTTCAGTTTTGTGTTTTAGAAAGCAGCCAGGAAATTCTGGATCTTATTCACAAG atgtataacatgctggattccacatagctttgtcacctgtcaccctgcagAACTCCTCACCTTGGCTGATCCCTGTCTTGTCAGATATGTTAAGGCACAGCTTTAAGTGTGGTGTGTTGGAAAGTACTCAGGAAATTTTGGATCTCATTCATAAGgtaagcgacaagcgtccaaacaaattgtgatggatagttaattaatttct Alignment from Exonerate_coding2genome atgtataacatgctggattccacatagctttgtcacctgtcaccctgcagaactcctcaccttggctgatccctgtcttgtcagatatgttaaggcacagctttaagtgtggtgtgttggaaagtactcaggaaattttggatctcattcataaggtaagcgacaagcgtccaaacaaattgtgatggatagttaattaatttct Alignment from GeneWise AACTCTTCATCTTGGCTCATACCTATCCTGTCGGATATGCTGAGACACATTTTTCAGTTTTGTGTTTTAGAAAGCAGCCAGGAAATTCTGGATCTTATTCACAAG atgtataacatgctggattccacatagctttgtcacctgtcaccctgcagAACTCCTCACCTTGGCTGATCCCTGTCTTGTCAGATATGTTAAGGCACAGCTTTAAGTGTGGTGTGTTGGAAAGTACTCAGGAAATTTTGGATCTCATTCATAAGgtaagcgacaagcgtccaaacaaattgtgatggatagttaattaatttct #### Btaf1_ID7240_19 --> 0 - 0 Original Alignment GAGTGTAAAGCTGTTACCCTAGCTGTGCAACCGCGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTTCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAACAACAATGTTTTAACAATAGATCAAGCAAACGACCTG ctttgagttagcagactattaagtccttatttcaacattacatttaacagGAATGTAAAGCTGTCACCCTAGCAGTACAGCCACATTTACTTGATATCCTTTCAGAACACTTGTATTATGACGAAATTGCTGTCCCATTCACACACATGCAAAATGAATGTAAACAGTTTATATCTACACTTGCTGATGCACATATTGAAGTCGGCAATAGTGTCAATAACAACGCCTTAACAATAGATCAGGCAAATGACCTGgtacggtacagaagtcaaagcaactgtgttctaatattgttaggaagaag Alignment from CESAR GAGTGTAAAGCTGTTACCCTAGCTGTGCAACCGCGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTTCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAACAACAATGTTTTAACAATAGATCAAGCAAACGACCTG ctttgagttagcagactattaagtccttatttcaacattacatttaacagGAATGTAAAGCTGTCACCCTAGCAGTACAGCCACATTTACTTGATATCCTTTCAGAACACTTGTATTATGACGAAATTGCTGTCCCATTCACACACATGCAAAATGAATGTAAACAGTTTATATCTACACTTGCTGATGCACATATTGAAGTCGGCAATAGTGTCAATAACAACGCCTTAACAATAGATCAGGCAAATGACCTGgtacggtacagaagtcaaagcaactgtgttctaatattgttaggaagaag Alignment from Spaln_aa2Genome GGAGTGTAAAGCTGTTACCCTAGCTGTGCAACCGCGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTTCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAACAACAATGTTTTAACAATAGATCAAGCAAACGACCT ctttgagttagcagactattaagtccttatttcaacattacatttaacagGAATGTAAAGCTGTCACCCTAGCAGTACAGCCACATTTACTTGATATCCTTTCAGAACACTTGTATTATGACGAAATTGCTGTCCCATTCACACACATGCAAAATGAATGTAAACAGTTTATATCTACACTTGCTGATGCACATATTGAAGTCGGCAATAGTGTCAATAACAACGCCTTAACAATAGATCAGGCAAATGACCTGgtacggtacagaagtcaaagcaactgtgttctaatattgttaggaagaag Alignment from Spaln_nt2Genome GAGTGTAAAGCTGTTACCCTAGCTGTGCAACCGCGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTTCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAACAACAATGTTTTAACAATAGATCAAGCAAACGACCTG ctttgagttagcagactattaagtccttatttcaacattacatttaacagGAATGTAAAGCTGTCACCCTAGCAGTACAGCCACATTTACTTGATATCCTTTCAGAACACTTGTATTATGACGAAATTGCTGTCCCATTCACACACATGCAAAATGAATGTAAACAGTTTATATCTACACTTGCTGATGCACATATTGAAGTCGGCAATAGTGTCAATAACAACGCCTTAACAATAGATCAGGCAAATGACCTGgtacggtacagaagtcaaagcaactgtgttctaatattgttaggaagaag Alignment from Pairagon GAGTGTAAAGCTGTTACCCTAGCTGTGCAACCGCGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTTCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAACAACAATGTTTTAACAATAGATCAAGCAAACGACCTG ctttgagttagcagactattaagtccttatttcaacattacatttaacagGAATGTAAAGCTGTCACCCTAGCAGTACAGCCACATTTACTTGATATCCTTTCAGAACACTTGTATTATGACGAAATTGCTGTCCCATTCACACACATGCAAAATGAATGTAAACAGTTTATATCTACACTTGCTGATGCACATATTGAAGTCGGCAATAGTGTCAATAACAACGCCTTAACAATAGATCAGGCAAATGACCTGgtacggtacagaagtcaaagcaactgtgttctaatattgttaggaagaag Alignment from Exonerate_protein2genome GAGTGTAAAGCTGTTACCCTAGCTGTGCAACCGCGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTTCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAACAACAATGTTTTAACAATAGATCAAGCAAACGACCTG ctttgagttagcagactattaagtccttatttcaacattacatttaacagGAATGTAAAGCTGTCACCCTAGCAGTACAGCCACATTTACTTGATATCCTTTCAGAACACTTGTATTATGACGAAATTGCTGTCCCATTCACACACATGCAAAATGAATGTAAACAGTTTATATCTACACTTGCTGATGCACATATTGAAGTCGGCAATAGTGTCAATAACAACGCCTTAACAATAGATCAGGCAAATGACCTGgtacggtacagaagtcaaagcaactgtgttctaatattgttaggaagaag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAGTGTAAAGCTGTTACCCTAGCTGTGCAACCGCGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTTCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAACAACAATGTTTTAACAATAGATCAAGCAAACGACCTG ctttgagttagcagactattaagtccttatttcaacattacatttaacagGAATGTAAAGCTGTCACCCTAGCAGTACAGCCACATTTACTTGATATCCTTTCAGAACACTTGTATTATGACGAAATTGCTGTCCCATTCACACACATGCAAAATGAATGTAAACAGTTTATATCTACACTTGCTGATGCACATATTGAAGTCGGCAATAGTGTCAATAACAACGCCTTAACAATAGATCAGGCAAATGACCTGgtacggtacagaagtcaaagcaactgtgttctaatattgttaggaagaag #### Btaf1_ID7243_22 --> 0 - 1 Original Alignment GGTCAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAATTTGCCTTAACAACTATAGTGAAGCATTTTGGTGCTGAAATGGCAGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCATTGAAGTCTATGATTGACCTAAATAATTTTg attatgcagggatccaaccaatattatcttggggttctctctccctgcagGGAAAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAGTTTGCCTTGACCACTATAGTCAAATATTTTGGTGCTGAAATGGCTGTGAAGTTGCCACATCTCTGGGACACTATGGTTGGTTCATTGAAGTCTATGATTGACCTAAATAATTTTggtaacatgtctgcagtttaaattaattaagtgatgtttgtatatcctact Alignment from CESAR GGTCAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAATTTGCCTTAACAACTATAGTGAAGCATTTTGGTGCTGAAATGGCAGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCATTGAAGTCTATGATTGACCTAAATAATTTTg attatgcagggatccaaccaatattatcttggggttctctctccctgcagGGAAAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAGTTTGCCTTGACCACTATAGTCAAATATTTTGGTGCTGAAATGGCTGTGAAGTTGCCACATCTCTGGGACACTATGGTTGGTTCATTGAAGTCTATGATTGACCTAAATAATTTTggtaacatgtctgcagtttaaattaattaagtgatgtttgtatatcctact Alignment from Spaln_aa2Genome GGGTCAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAATTTGCCTTAACAACTATAGTGAAGCATTTTGGTGCTGAAATGGCAGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCATTGAAGTCTATGATTGACCTAAATAATTTT attatgcagggatccaaccaatattatcttggggttctctctccctgcagGGAAAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAGTTTGCCTTGACCACTATAGTCAAATATTTTGGTGCTGAAATGGCTGTGAAGTTGCCACATCTCTGGGACACTATGGTTGGTTCATTGAAGTCTATGATTGACCTAAATAATTTTGgtaacatgtctgcagtttaaattaattaagtgatgtttgtatatcctact Alignment from Spaln_nt2Genome GGTCAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAATTTGCCTTAACAACTATAGTGAAGCATTTTGGTGCTGAAATGGCAGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCATTGAAGTCTATGATTGACCTAAATAATTTTG attatgcagggatccaaccaatattatcttggggttctctctccctgcagGGAAAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAGTTTGCCTTGACCACTATAGTCAAATATTTTGGTGCTGAAATGGCTGTGAAGTTGCCACATCTCTGGGACACTATGGTTGGTTCATTGAAGTCTATGATTGACCTAAATAATTTTGgtaacatgtctgcagtttaaattaattaagtgatgtttgtatatcctact Alignment from Pairagon GGTCAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAATTTGCCTTAACAACTATAGTGAAGCATTTTGGTGCTGAAATGGCAGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCATTGAAGTCTATGATTGACCTAAATAATTTTG attatgcagggatccaaccaatattatcttggggttctctctccctgcagGGAAAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAGTTTGCCTTGACCACTATAGTCAAATATTTTGGTGCTGAAATGGCTGTGAAGTTGCCACATCTCTGGGACACTATGGTTGGTTCATTGAAGTCTATGATTGACCTAAATAATTTTGgtaacatgtctgcagtttaaattaattaagtgatgtttgtatatcctact Alignment from Exonerate_protein2genome GGTCAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAATTTGCCTTAACAACTATAGTGAAGCATTTTGGTGCTGAAATGGCAGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCATTGAAGTCTATGATTGACCTAAATAATTTTG attatgcagggatccaaccaatattatcttggggttctctctccctgcagGGAAAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAGTTTGCCTTGACCACTATAGTCAAATATTTTGGTGCTGAAATGGCTGTGAAGTTGCCACATCTCTGGGACACTATGGTTGGTTCATTGAAGTCTATGATTGACCTAAATAATTTTGgtaacatgtctgcagtttaaattaattaagtgatgtttgtatatcctact Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGTCAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAATTTGCCTTAACAACTATAGTGAAGCATTTTGGTGCTGAAATGGCAGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCATTGAAGTCTATGATTGACCTAAATAATTTTG attatgcagggatccaaccaatattatcttggggttctctctccctgcagGGAAAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAGTTTGCCTTGACCACTATAGTCAAATATTTTGGTGCTGAAATGGCTGTGAAGTTGCCACATCTCTGGGACACTATGGTTGGTTCATTGAAGTCTATGATTGACCTAAATAATTTTGgtaacatgtctgcagtttaaattaattaagtgatgtttgtatatcctact #### Btaf1_ID7250_29 --> 1 - 2 Original Alignment gTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTAGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTag tagggagaatattagaatccgaccatatcctgtctcctctctctgcccaggTTGCAACATCAAGTAAAAAGGCATAATCTTATAGTGGCATCATATGATGTTGTCAGGAATGATATAGACTTTTTTaggtatgtcttacattaatgtaaacatctatcaagagcattgattcatgagg Alignment from CESAR gTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTAGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTag tagggagaatattagaatccgaccatatcctgtctcctctctctgcccaggTTGCAACATCAAGTAAAAAGGCATAATCTTATAGTGGCATCATATGATGTTGTCAGGAATGATATAGACTTTTTTaggtatgtcttacattaatgtaaacatctatcaagagcattgattcatgagg Alignment from Spaln_aa2Genome GGTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTAGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTA tagggagaatattagaatccgaccatatcctgtctcctctctctgcccagGTTGCAACATCAAGTAAAAAGGCATAATCTTATAGTGGCATCATATGATGTTGTCAGGAATGATATAGACTTTTTTAGgtatgtcttacattaatgtaaacatctatcaagagcattgattcatgagg Alignment from Spaln_nt2Genome GTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTAGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTAG tagggagaatattagaatccgaccatatcctgtctcctctctctgcccagGTTGCAACATCAAGTAAAAAGGCATAATCTTATAGTGGCATCATATGATGTTGTCAGGAATGATATAGACTTTTTTAGgtatgtcttacattaatgtaaacatctatcaagagcattgattcatgagg Alignment from Pairagon GTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTAGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTAG tagggagaatattagaatccgaccatatcctgtctcctctctctgcccagGTTGCAACATCAAGTAAAAAGGCATAATCTTATAGTGGCATCATATGATGTTGTCAGGAATGATATAGACTTTTTTAGgtatgtcttacattaatgtaaacatctatcaagagcattgattcatgagg Alignment from Exonerate_protein2genome GTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTAGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTAG tagggagaatattagaatccgaccatatcctgtctcctctctctgcccagGTTGCAACATCAAGTAAAAAGGCATAATCTTATAGTGGCATCATATGATGTTGTCAGGAATGATATAGACTTTTTTAGgtatgtcttacattaatgtaaacatctatcaagagcattgattcatgagg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTTGCAACATCAAGTAAAAAGGCACAATCTGATAGTAGCCTCATATGATGTTGTGAGGAATGACATAGACTTTTTTAG tagggagaatattagaatccgaccatatcctgtctcctctctctgcccagGTTGCAACATCAAGTAAAAAGGCATAATCTTATAGTGGCATCATATGATGTTGTCAGGAATGATATAGACTTTTTTAGgtatgtcttacattaatgtaaacatctatcaagagcattgattcatgagg #### Btaf1_ID7254_33 --> 0 - 0 Original Alignment GTTCAGCTTTATGAAGATTTTGCTAAGTCGCGTGCCAAGTGTGATGTTGATGAGACCGTGTCTTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTTAAAGCGACAGGTCATGTATTCCAG ctagttcctgtccatttgaagtttgtactggcaatcctttctcattgcagGTACAGCTTTATGAAGATTTTGCTAAGTCTCGTGCCAAGTGTGATGTTGATGAGACTGTGTCCTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTCAAAGCCACAGGGCATGTTTTCCAGgtgagtgtgagatttacttcaccattactgtaacactaatgtctagggca Alignment from CESAR GTTCAGCTTTATGAAGATTTTGCTAAGTCGCGTGCCAAGTGTGATGTTGATGAGACCGTGTCTTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTTAAAGCGACAGGTCATGTATTCCAG ctagttcctgtccatttgaagtttgtactggcaatcctttctcattgcagGTACAGCTTTATGAAGATTTTGCTAAGTCTCGTGCCAAGTGTGATGTTGATGAGACTGTGTCCTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTCAAAGCCACAGGGCATGTTTTCCAGgtgagtgtgagatttacttcaccattactgtaacactaatgtctagggca Alignment from Spaln_aa2Genome GGTTCAGCTTTATGAAGATTTTGCTAAGTCGCGTGCCAAGTGTGATGTTGATGAGACCGTGTCTTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTTAAAGCGACAGGTCATGTATTCCA ctagttcctgtccatttgaagtttgtactggcaatcctttctcattgcagGTACAGCTTTATGAAGATTTTGCTAAGTCTCGTGCCAAGTGTGATGTTGATGAGACTGTGTCCTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTCAAAGCCACAGGGCATGTTTTCCAGgtgagtgtgagatttacttcaccattactgtaacactaatgtctagggca Alignment from Spaln_nt2Genome GTTCAGCTTTATGAAGATTTTGCTAAGTCGCGTGCCAAGTGTGATGTTGATGAGACCGTGTCTTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTTAAAGCGACAGGTCATGTATTCCAG ctagttcctgtccatttgaagtttgtactggcaatcctttctcattgcagGTACAGCTTTATGAAGATTTTGCTAAGTCTCGTGCCAAGTGTGATGTTGATGAGACTGTGTCCTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTCAAAGCCACAGGGCATGTTTTCCAGgtgagtgtgagatttacttcaccattactgtaacactaatgtctagggca Alignment from Pairagon GTTCAGCTTTATGAAGATTTTGCTAAGTCGCGTGCCAAGTGTGATGTTGATGAGACCGTGTCTTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTTAAAGCGACAGGTCATGTATTCCAG ctagttcctgtccatttgaagtttgtactggcaatcctttctcattgcagGTACAGCTTTATGAAGATTTTGCTAAGTCTCGTGCCAAGTGTGATGTTGATGAGACTGTGTCCTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTCAAAGCCACAGGGCATGTTTTCCAGgtgagtgtgagatttacttcaccattactgtaacactaatgtctagggca Alignment from Exonerate_protein2genome GTTCAGCTTTATGAAGATTTTGCTAAGTCGCGTGCCAAGTGTGATGTTGATGAGACCGTGTCTTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTTAAAGCGACAGGTCATGTATTCCAGGCG ctagttcctgtccatttgaagtttgtactggcaatcctttctcattgcagGTACAGCTTTATGAAGATTTTGCTAAGTCTCGTGCCAAGTGTGATGTTGATGAGACTGTGTCCTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTCAAAGCCACAGGGCATGTTTTCCAG---gtgagtgtgagatttacttcaccattactgtaacactaatgtctagg Alignment from Exonerate_coding2genome GTTCAGCTTTATGAAGATTTTGCTAAGTCGCGTGCCAAGTGTGATGTTGATGAGACCGTGTCTTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTTAAAGCGACAGGTCATGTATTCCAGGCG ctagttcctgtccatttgaagtttgtactggcaatcctttctcattgcagGTACAGCTTTATGAAGATTTTGCTAAGTCTCGTGCCAAGTGTGATGTTGATGAGACTGTGTCCTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTCAAAGCCACAGGGCATGTTTTCCAG---gtgagtgtgagatttacttcaccattactgtaacactaatgtctagg Alignment from GeneWise GTTCAGCTTTATGAAGATTTTGCTAAGTCGCGTGCCAAGTGTGATGTTGATGAGACCGTGTCTTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTTAAAGCGACAGGTCATGTATTCCAGGCGTTA ctagttcctgtccatttgaagtttgtactggcaatcctttctcattgcagGTACAGCTTTATGAAGATTTTGCTAAGTCTCGTGCCAAGTGTGATGTTGATGAGACTGTGTCCTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTCAAAGCCACAGGGCATGTTTTCCAGGTGAGTgtgagatttacttcaccattactgtaacactaatgtctagggca #### Btaf1_ID7257_36 --> 1 - 0 Original Alignment gTTTAACAACGACCCCTCCATCGATGTTCTTCTACTCACAACTCACGTTGGTGGCCTGGGCCTGAACTTGACTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTGGAACCCTATGCGAGATCTGCAGGCCATGGACCGGGCCCATCGTATTGGGCAG agagccaccgcccccagccccgcagtactttgtttatttcctgttttcaggTTCAATAACAAACCCTCAATTGATGCTCTTCTACTTACAACTCATGTGGGAGGGCTAGGCTTGAATTTGAGTGGAGCTGACACTGTGGTGTTTGTGGATCATGACTTGAATCCAATGTGTGATCTACAGGCAATGGATCGGGCCCATCGTATTGGGCAGgtatggtcttcctctctattgcattaacattggacaaatagaggtactca Alignment from CESAR gTTTAACAACGACCCCTCCATCGATGTTCTTCTACTCACAACTCACGTTGGTGGCCTGGGCCTGAACTTGACTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTGGAACCCTATGCGAGATCTGCAGGCCATGGACCGGGCCCATCGTATTGGGCAG agagccaccgcccccagccccgcagtactttgtttatttcctgttttcaggTTCAATAACAAACCCTCAATTGATGCTCTTCTACTTACAACTCATGTGGGAGGGCTAGGCTTGAATTTGAGTGGAGCTGACACTGTGGTGTTTGTGGATCATGACTTGAATCCAATGTGTGATCTACAGGCAATGGATCGGGCCCATCGTATTGGGCAGgtatggtcttcctctctattgcattaacattggacaaatagaggtactca Alignment from Spaln_aa2Genome GGTTTAACAACGACCCCTCCATCGATGTTCTTCTACTCACAACTCACGTTGGTGGCCTGGGCCTGAACTTGACTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTGGAACCCTATGCGAGATCTGCAGGCCATGGACCGGGCCCATCGTATTGGGCA agagccaccgcccccagccccgcagtactttgtttatttcctgttttcagGTTCAATAACAAACCCTCAATTGATGCTCTTCTACTTACAACTCATGTGGGAGGGCTAGGCTTGAATTTGAGTGGAGCTGACACTGTGGTGTTTGTGGATCATGACTTGAATCCAATGTGTGATCTACAGGCAATGGATCGGGCCCATCGTATTGGGCAGgtatggtcttcctctctattgcattaacattggacaaatagaggtactca Alignment from Spaln_nt2Genome GTTTAACAACGACCCCTCCATCGATGTTCTTCTACTCACAACTCACGTTGGTGGCCTGGGCCTGAACTTGACTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTGGAACCCTATGCGAGATCTGCAGGCCATGGACCGGGCCCATCGTATTGGGCAG agagccaccgcccccagccccgcagtactttgtttatttcctgttttcagGTTCAATAACAAACCCTCAATTGATGCTCTTCTACTTACAACTCATGTGGGAGGGCTAGGCTTGAATTTGAGTGGAGCTGACACTGTGGTGTTTGTGGATCATGACTTGAATCCAATGTGTGATCTACAGGCAATGGATCGGGCCCATCGTATTGGGCAGgtatggtcttcctctctattgcattaacattggacaaatagaggtactca Alignment from Pairagon GTTTAACAACGACCCCTCCATCGATGTTCTTCTACTCACAACTCACGTTGGTGGCCTGGGCCTGAACTTGACTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTGGAACCCTATGCGAGATCTGCAGGCCATGGACCGGGCCCATCGTATTGGGCAG agagccaccgcccccagccccgcagtactttgtttatttcctgttttcagGTTCAATAACAAACCCTCAATTGATGCTCTTCTACTTACAACTCATGTGGGAGGGCTAGGCTTGAATTTGAGTGGAGCTGACACTGTGGTGTTTGTGGATCATGACTTGAATCCAATGTGTGATCTACAGGCAATGGATCGGGCCCATCGTATTGGGCAGgtatggtcttcctctctattgcattaacattggacaaatagaggtactca Alignment from Exonerate_protein2genome GTTTAACAACGACCCCTCCATCGATGTTCTTCTACTCACAACTCACGTTGGTGGCCTGGGCCTGAACTTGACTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTGGAACCCTATGCGAGATCTGCAGGCCATGGACCGGGCCCATCGTATTGGGCAG agagccaccgcccccagccccgcagtactttgtttatttcctgttttcagGTTCAATAACAAACCCTCAATTGATGCTCTTCTACTTACAACTCATGTGGGAGGGCTAGGCTTGAATTTGAGTGGAGCTGACACTGTGGTGTTTGTGGATCATGACTTGAATCCAATGTGTGATCTACAGGCAATGGATCGGGCCCATCGTATTGGGCAGgtatggtcttcctctctattgcattaacattggacaaatagaggtactca Alignment from Exonerate_coding2genome GTTTAACAACGACCCCTCCATCGATGTTCTTCTACTCACAACTCACGTTGGTGGCCTGGGCCTGAACTTGACTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTGGAACCCTATGCGAGATCTGCAGGCCATGGACCGGGCCCATCGTATTGGGCAG agagccaccgcccccagccccgcagtactttgtttatttcctgttttcagGTTCAATAACAAACCCTCAATTGATGCTCTTCTACTTACAACTCATGTGGGAGGGCTAGGCTTGAATTTGAGTGGAGCTGACACTGTGGTGTTTGTGGATCATGACTTGAATCCAATGTGTGATCTACAGGCAATGGATCGGGCCCATCGTATTGGGCAGgtatggtcttcctctctattgcattaacattggacaaatagaggtactca Alignment from GeneWise GTTTAACAACGACCCCTCCATCGATGTTCTTCTACTCACAACTCACGTTGGTGGCCTGGGCCTGAACTTGACTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTGGAACCCTATGCGAGATCTGCAGGCCATGGACCGGGCCCATCGTATTGGGCAG agagccaccgcccccagccccgcagtactttgtttatttcctgttttcagGTTCAATAACAAACCCTCAATTGATGCTCTTCTACTTACAACTCATGTGGGAGGGCTAGGCTTGAATTTGAGTGGAGCTGACACTGTGGTGTTTGTGGATCATGACTTGAATCCAATGTGTGATCTACAGGCAATGGATCGGGCCCATCGTATTGGGCAGgtatggtcttcctctctattgcattaacattggacaaatagaggtactca #### Btrc_ID9403_2 --> 0 - 0 Original Alignment TGCTCTATGCCCAGGTCTCTGTGGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCCTTCGCTGCGATGCCTGTATAACCCAGGGACTGGCGCACTCACAGCTTTCCAG caccttccccttcacccatgactggtgatgtgccgattattcacttgcagTGCTCTATGCCAAGATCATTGTGGTTGGGTTGCTCTAGCTTTGCAGATACCATGCCATCTCTGCGATGCCTCTATAACCCAGGGACAGGTGCTCTCACAGCCTTTCAAgtgagctaggatataatttatcagtgcccctactagattaaccctttctt Alignment from CESAR TGCTCTATGCCCAGGTCTCTGTGGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCCTTCGCTGCGATGCCTGTATAACCCAGGGACTGGCGCACTCACAGCTTTCCAG caccttccccttcacccatgactggtgatgtgccgattattcacttgcagTGCTCTATGCCAAGATCATTGTGGTTGGGTTGCTCTAGCTTTGCAGATACCATGCCATCTCTGCGATGCCTCTATAACCCAGGGACAGGTGCTCTCACAGCCTTTCAAgtgagctaggatataatttatcagtgcccctactagattaaccctttctt Alignment from Spaln_aa2Genome TGCTCTATGCCCAGGTCTCTGTGGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCCTTCGCTGCGATGCCTGTATAACCCAGGGACTGGCGCACTCACAGCTTTCCAG caccttccccttcacccatgactggtgatgtgccgattattcacttgcagTGCTCTATGCCAAGATCATTGTGGTTGGGTTGCTCTAGCTTTGCAGATACCATGCCATCTCTGCGATGCCTCTATAACCCAGGGACAGGTGCTCTCACAGCCTTTCAAgtgagctaggatataatttatcagtgcccctactagattaaccctttctt Alignment from Spaln_nt2Genome TGCTCTATGCCCAGGTCTCTGTGGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCCTTCGCTGCGATGCCTGTATAACCCAGGGACTGGCGCACTCACAGCTTTCCAG caccttccccttcacccatgactggtgatgtgccgattattcacttgcagTGCTCTATGCCAAGATCATTGTGGTTGGGTTGCTCTAGCTTTGCAGATACCATGCCATCTCTGCGATGCCTCTATAACCCAGGGACAGGTGCTCTCACAGCCTTTCAAgtgagctaggatataatttatcagtgcccctactagattaaccctttctt Alignment from Pairagon TGCTCTATGCCCAGGTCTCTGTGGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCCTTCGCTGCGATGCCTGTATAACCCAGGGACTGGCGCACTCACAGCTTTCCAG caccttccccttcacccatgactggtgatgtgccgattattcacttgcagTGCTCTATGCCAAGATCATTGTGGTTGGGTTGCTCTAGCTTTGCAGATACCATGCCATCTCTGCGATGCCTCTATAACCCAGGGACAGGTGCTCTCACAGCCTTTCAAgtgagctaggatataatttatcagtgcccctactagattaaccctttctt Alignment from Exonerate_protein2genome TGCTCTATGCCCAGGTCTCTGTGGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCCTTCGCTGCGATGCCTGTATAACCCAGGGACTGGCGCACTCACAGCTTTCCAG caccttccccttcacccatgactggtgatgtgccgattattcacttgcagTGCTCTATGCCAAGATCATTGTGGTTGGGTTGCTCTAGCTTTGCAGATACCATGCCATCTCTGCGATGCCTCTATAACCCAGGGACAGGTGCTCTCACAGCCTTTCAAgtgagctaggatataatttatcagtgcccctactagattaaccctttctt Alignment from Exonerate_coding2genome CTTAAGTTTATGTGCTCTATGCCCAGGTCTCTGTGGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCCTTCGCTGCGATGCCTGTATAACCCAGGGACTGGCGCACTCACAGCTTTCCAG caccttccccttcacccatgactggtgatgtgccgattATTCACTTGCAGTGCTCTATGCCAAGATCATTGTGGTTGGGTTGCTCTAGCTTTGCAGATACCATGCCATCTCTGCGATGCCTCTATAACCCAGGGACAGGTGCTCTCACAGCCTTTCAAgtgagctaggatataatttatcagtgcccctactagattaaccctttctt Alignment from GeneWise TGCTCTATGCCCAGGTCTCTGTGGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCCTTCGCTGCGATGCCTGTATAACCCAGGGACTGGCGCACTCACAGCTTTCCAG caccttccccttcacccatgactggtgatgtgccgattattcacttgcagTGCTCTATGCCAAGATCATTGTGGTTGGGTTGCTCTAGCTTTGCAGATACCATGCCATCTCTGCGATGCCTCTATAACCCAGGGACAGGTGCTCTCACAGCCTTTCAAgtgagctaggatataatttatcagtgcccctactagattaaccctttctt #### Btrc_ID9462_11 --> 0 - 2 Original Alignment GTGTGGAACACAAGTACCTGTGAATTCGTAAGGACCCTAAATGGGCACAAGCGTGGCATCGCCTGTTTGCAGTACAGAGACAGGCTGGTGGTGAGCGGCTCCTCTGACAACACCATCag agtggtgcctctcaggtcagagtagccccttctgtctcctgcccacctagGTATGGACCACTAGTACCTGTCAATTTGTAAGGACTTCAAACGGGCACAAGCGTGGCATTGCATGTTTGCAGTACAGAGACAAGTTGGTGGTGAGTGGCTCTTCTGACAATACCATCaggtaaagataagaggaaccacctcactagaataccttcatgctatctcccc Alignment from CESAR GTGTGGAACACAAGTACCTGTGAATTCGTAAGGACCCTAAATGGGCACAAGCGTGGCATCGCCTGTTTGCAGTACAGAGACAGGCTGGTGGTGAGCGGCTCCTCTGACAACACCATCag agtggtgcctctcaggtcagagtagccccttctgtctcctgcccacctagGTATGGACCACTAGTACCTGTCAATTTGTAAGGACTTCAAACGGGCACAAGCGTGGCATTGCATGTTTGCAGTACAGAGACAAGTTGGTGGTGAGTGGCTCTTCTGACAATACCATCaggtaaagataagaggaaccacctcactagaataccttcatgctatctcccc Alignment from Spaln_aa2Genome GTGTGGAACACAAGTACCTGTGAATTCGTAAGGACCCTAAATGGGCACAAGCGTGGCATCGCCTGTTTGCAGTACAGAGACAGGCTGGTGGTGAGCGGCTCCTCTGACAACACCATCAG agtggtgcctctcaggtcagagtagccccttctgtctcctgcccacctagGTATGGACCACTAGTACCTGTCAATTTGTAAGGACTTCAAACGGGCACAAGCGTGGCATTGCATGTTTGCAGTACAGAGACAAGTTGGTGGTGAGTGGCTCTTCTGACAATACCATCAGgtaaagataagaggaaccacctcactagaataccttcatgctatctcccc Alignment from Spaln_nt2Genome GTGTGGAACACAAGTACCTGTGAATTCGTAAGGACCCTAAATGGGCACAAGCGTGGCATCGCCTGTTTGCAGTACAGAGACAGGCTGGTGGTGAGCGGCTCCTCTGACAACACCATCAG agtggtgcctctcaggtcagagtagccccttctgtctcctgcccacctagGTATGGACCACTAGTACCTGTCAATTTGTAAGGACTTCAAACGGGCACAAGCGTGGCATTGCATGTTTGCAGTACAGAGACAAGTTGGTGGTGAGTGGCTCTTCTGACAATACCATCAGgtaaagataagaggaaccacctcactagaataccttcatgctatctcccc Alignment from Pairagon GTGTGGAACACAAGTACCTGTGAATTCGTAAGGACCCTAAATGGGCACAAGCGTGGCATCGCCTGTTTGCAGTACAGAGACAGGCTGGTGGTGAGCGGCTCCTCTGACAACACCATCAG agtggtgcctctcaggtcagagtagccccttctgtctcctgcccacctagGTATGGACCACTAGTACCTGTCAATTTGTAAGGACTTCAAACGGGCACAAGCGTGGCATTGCATGTTTGCAGTACAGAGACAAGTTGGTGGTGAGTGGCTCTTCTGACAATACCATCAGgtaaagataagaggaaccacctcactagaataccttcatgctatctcccc Alignment from Exonerate_protein2genome GTGTGGAACACAAGTACCTGTGAATTCGTAAGGACCCTAAATGGGCACAAGCGTGGCATCGCCTGTTTGCAGTACAGAGACAGGCTGGTGGTGAGCGGCTCCTCTGACAACACCATCAG agtggtgcctctcaggtcagagtagccccttctgtctcctgcccacctagGTATGGACCACTAGTACCTGTCAATTTGTAAGGACTTCAAACGGGCACAAGCGTGGCATTGCATGTTTGCAGTACAGAGACAAGTTGGTGGTGAGTGGCTCTTCTGACAATACCATCAGgtaaagataagaggaaccacctcactagaataccttcatgctatctcccc Alignment from Exonerate_coding2genome GTGTGGAACACAAGTACCTGTGAATTCGTAAGGACCCTAAATGGGCACAAGCGTGGCATCGCCTGTTTGCAGTACAGAGACAGGCTGGTGGTGAGCGGCTCCTCTGACAACACCATCAG agtggtgcctctcaggtcagagtagccccttctgtctcctgcccacctagGTATGGACCACTAGTACCTGTCAATTTGTAAGGACTTCAAACGGGCACAAGCGTGGCATTGCATGTTTGCAGTACAGAGACAAGTTGGTGGTGAGTGGCTCTTCTGACAATACCATCAGgtaaagataagaggaaccacctcactagaataccttcatgctatctcccc Alignment from GeneWise GTGTGGAACACAAGTACCTGTGAATTCGTAAGGACCCTAAATGGGCACAAGCGTGGCATCGCCTGTTTGCAGTACAGAGACAGGCTGGTGGTGAGCGGCTCCTCTGACAACACCATCAG agtggtgcctctcaggtcagagtagccccttctgtctcctgcccacctagGTATGGACCACTAGTACCTGTCAATTTGTAAGGACTTCAAACGGGCACAAGCGTGGCATTGCATGTTTGCAGTACAGAGACAAGTTGGTGGTGAGTGGCTCTTCTGACAATACCATCAGgtaaagataagaggaaccacctcactagaataccttcatgctatctcccc #### C030046E11Rik_ID6295_9 --> 2 - 2 Original Alignment acATCTGGAACAAAACAGGAGCTGTTAAATTGATTAGATGGTCTCCTGACAACAGCGCTGTAATAGTAACCTGGGAATATGGAGGTCTTTCTCTGTGGAGTGTGTTTGGAGCCCAGCTGATATGTACACTTGGAGGAGACTTCgc atctaacttcagacaccttacaactgatcttcgctgttcttggtgtttagacATCTGGAATAAAACTGGAGCAGTAAAGTTGATTAGTTGGTCTCCAGATAACAGTGCTGTAATAGTGACTTGGGAATATGGAGGTCTCTCTCTATGGAGTGTGTTTGGGGCTCAACTGATCTGTACACTTGGGGGAGACTTTgcgtaagtacaaagatacttctagtactatgggagctggggaaagactggct Alignment from CESAR acATCTGGAACAAAACAGGAGCTGTTAAATTGATTAGATGGTCTCCTGACAACAGCGCTGTAATAGTAACCTGGGAATATGGAGGTCTTTCTCTGTGGAGTGTGTTTGGAGCCCAGCTGATATGTACACTTGGAGGAGACTTCgc atctaacttcagacaccttacaactgatcttcgctgttcttggtgtttagacATCTGGAATAAAACTGGAGCAGTAAAGTTGATTAGTTGGTCTCCAGATAACAGTGCTGTAATAGTGACTTGGGAATATGGAGGTCTCTCTCTATGGAGTGTGTTTGGGGCTCAACTGATCTGTACACTTGGGGGAGACTTTgcgtaagtacaaagatacttctagtactatgggagctggggaaagactggct Alignment from Spaln_aa2Genome ACATCTGGAACAAAACAGGAGCTGTTAAATTGATTAGATGGTCTCCTGACAACAGCGCTGTAATAGTAACCTGGGAATATGGAGGTCTTTCTCTGTGGAGTGTGTTTGGAGCCCAGCTGATATGTACACTTGGAGGAGACTTCGC atctaacttcagacaccttacaactgatcttcgctgttcttggtgtttagACATCTGGAATAAAACTGGAGCAGTAAAGTTGATTAGTTGGTCTCCAGATAACAGTGCTGTAATAGTGACTTGGGAATATGGAGGTCTCTCTCTATGGAGTGTGTTTGGGGCTCAACTGATCTGTACACTTGGGGGAGACTTTGCgtaagtacaaagatacttctagtactatgggagctggggaaagactggct Alignment from Spaln_nt2Genome ACATCTGGAACAAAACAGGAGCTGTTAAATTGATTAGATGGTCTCCTGACAACAGCGCTGTAATAGTAACCTGGGAATATGGAGGTCTTTCTCTGTGGAGTGTGTTTGGAGCCCAGCTGATATGTACACTTGGAGGAGACTTCGC atctaacttcagacaccttacaactgatcttcgctgttcttggtgtttagACATCTGGAATAAAACTGGAGCAGTAAAGTTGATTAGTTGGTCTCCAGATAACAGTGCTGTAATAGTGACTTGGGAATATGGAGGTCTCTCTCTATGGAGTGTGTTTGGGGCTCAACTGATCTGTACACTTGGGGGAGACTTTGCgtaagtacaaagatacttctagtactatgggagctggggaaagactggct Alignment from Pairagon ACATCTGGAACAAAACAGGAGCTGTTAAATTGATTAGATGGTCTCCTGACAACAGCGCTGTAATAGTAACCTGGGAATATGGAGGTCTTTCTCTGTGGAGTGTGTTTGGAGCCCAGCTGATATGTACACTTGGAGGAGACTTCGC atctaacttcagacaccttacaactgatcttcgctgttcttggtgtttagACATCTGGAATAAAACTGGAGCAGTAAAGTTGATTAGTTGGTCTCCAGATAACAGTGCTGTAATAGTGACTTGGGAATATGGAGGTCTCTCTCTATGGAGTGTGTTTGGGGCTCAACTGATCTGTACACTTGGGGGAGACTTTGCgtaagtacaaagatacttctagtactatgggagctggggaaagactggct Alignment from Exonerate_protein2genome ACATCTGGAACAAAACAGGAGCTGTTAAATTGATTAGATGGTCTCCTGACAACAGCGCTGTAATAGTAACCTGGGAATATGGAGGTCTTTCTCTGTGGAGTGTGTTTGGAGCCCAGCTGATATGTACACTTGGAGGAGACTTCGC atctaacttcagacaccttacaactgatcttcgctgttcttggtgtttagACATCTGGAATAAAACTGGAGCAGTAAAGTTGATTAGTTGGTCTCCAGATAACAGTGCTGTAATAGTGACTTGGGAATATGGAGGTCTCTCTCTATGGAGTGTGTTTGGGGCTCAACTGATCTGTACACTTGGGGGAGACTTTGCgtaagtacaaagatacttctagtactatgggagctggggaaagactggct Alignment from Exonerate_coding2genome ACATCTGGAACAAAACAGGAGCTGTTAAATTGATTAGATGGTCTCCTGACAACAGCGCTGTAATAGTAACCTGGGAATATGGAGGTCTTTCTCTGTGGAGTGTGTTTGGAGCCCAGCTGATATGTACACTTGGAGGAGACTTCGC atctaacttcagacaccttacaactgatcttcgctgttcttggtgtttagACATCTGGAATAAAACTGGAGCAGTAAAGTTGATTAGTTGGTCTCCAGATAACAGTGCTGTAATAGTGACTTGGGAATATGGAGGTCTCTCTCTATGGAGTGTGTTTGGGGCTCAACTGATCTGTACACTTGGGGGAGACTTTGCgtaagtacaaagatacttctagtactatgggagctggggaaagactggct Alignment from GeneWise ACATCTGGAACAAAACAGGAGCTGTTAAATTGATTAGATGGTCTCCTGACAACAGCGCTGTAATAGTAACCTGGGAATATGGAGGTCTTTCTCTGTGGAGTGTGTTTGGAGCCCAGCTGATATGTACACTTGGAGGAGACTTCGC atctaacttcagacaccttacaactgatcttcgctgttcttggtgtttagACATCTGGAATAAAACTGGAGCAGTAAAGTTGATTAGTTGGTCTCCAGATAACAGTGCTGTAATAGTGACTTGGGAATATGGAGGTCTCTCTCTATGGAGTGTGTTTGGGGCTCAACTGATCTGTACACTTGGGGGAGACTTTGCgtaagtacaaagatacttctagtactatgggagctggggaaagactggct #### C030046E11Rik_ID6298_12 --> 0 - 0 Original Alignment AGTAACCAAGAGCAGGTGTTGCTTCAGGGAGAAGATCGCTTGTACTTGAACTGTGGAGAAGCCTCACAGGCCCAGAATCCGAAGTACTCTTCAGCACGTGCTGAGCGTATGCCCAGGCATGAGAAGAGCCCATTTGCAGATGGAGGTCTGGAGGCTCCGGGATTAAGCACTTTACTTGGTCATCGGCATTGGCATGTTGTGCAG ggtggccaaaaatagaaatgtcttctctcctctcttgttcttttgctcagAGTAACCAGAAACAGGTGTTGCTCCAAGGAGAAGATCGCCTGTACCTGAATTGTGGAGAAGCCTCACAGGCCCTAAATCCAAAGTACTCTTCAGCACGTGCTGAACGTATGCCCAGGCATGAGAAGAGCTCGTTTGCAGATGGAGGGCTGGAAGCTCCAGGGTTAAGTCCTTTGCTTGGTCACCGACACTGGCATGTTGTCCAAgtaagtaacttttcaaatgaagggaccatattgttgctaccacgcatgta Alignment from CESAR AGTAACCAAGAGCAGGTGTTGCTTCAGGGAGAAGATCGCTTGTACTTGAACTGTGGAGAAGCCTCACAGGCCCAGAATCCGAAGTACTCTTCAGCACGTGCTGAGCGTATGCCCAGGCATGAGAAGAGCCCATTTGCAGATGGAGGTCTGGAGGCTCCGGGATTAAGCACTTTACTTGGTCATCGGCATTGGCATGTTGTGCAG ggtggccaaaaatagaaatgtcttctctcctctcttgttcttttgctcagAGTAACCAGAAACAGGTGTTGCTCCAAGGAGAAGATCGCCTGTACCTGAATTGTGGAGAAGCCTCACAGGCCCTAAATCCAAAGTACTCTTCAGCACGTGCTGAACGTATGCCCAGGCATGAGAAGAGCTCGTTTGCAGATGGAGGGCTGGAAGCTCCAGGGTTAAGTCCTTTGCTTGGTCACCGACACTGGCATGTTGTCCAAgtaagtaacttttcaaatgaagggaccatattgttgctaccacgcatgta Alignment from Spaln_aa2Genome AGTAACCAAGAGCAGGTGTTGCTTCAGGGAGAAGATCGCTTGTACTTGAACTGTGGAGAAGCCTCACAGGCCCAGAATCCGAAGTACTCTTCAGCACGTGCTGAGCGTATGCCCAGGCATGAGAAGAGCCCATTTGCAGATGGAGGTCTGGAGGCTCCGGGATTAAGCACTTTACTTGGTCATCGGCATTGGCATGTTGTGCAG ggtggccaaaaatagaaatgtcttctctcctctcttgttcttttgctcagAGTAACCAGAAACAGGTGTTGCTCCAAGGAGAAGATCGCCTGTACCTGAATTGTGGAGAAGCCTCACAGGCCCTAAATCCAAAGTACTCTTCAGCACGTGCTGAACGTATGCCCAGGCATGAGAAGAGCTCGTTTGCAGATGGAGGGCTGGAAGCTCCAGGGTTAAGTCCTTTGCTTGGTCACCGACACTGGCATGTTGTCCAAgtaagtaacttttcaaatgaagggaccatattgttgctaccacgcatgta Alignment from Spaln_nt2Genome AGTAACCAAGAGCAGGTGTTGCTTCAGGGAGAAGATCGCTTGTACTTGAACTGTGGAGAAGCCTCACAGGCCCAGAATCCGAAGTACTCTTCAGCACGTGCTGAGCGTATGCCCAGGCATGAGAAGAGCCCATTTGCAGATGGAGGTCTGGAGGCTCCGGGATTAAGCACTTTACTTGGTCATCGGCATTGGCATGTTGTGCAG ggtggccaaaaatagaaatgtcttctctcctctcttgttcttttgctcagAGTAACCAGAAACAGGTGTTGCTCCAAGGAGAAGATCGCCTGTACCTGAATTGTGGAGAAGCCTCACAGGCCCTAAATCCAAAGTACTCTTCAGCACGTGCTGAACGTATGCCCAGGCATGAGAAGAGCTCGTTTGCAGATGGAGGGCTGGAAGCTCCAGGGTTAAGTCCTTTGCTTGGTCACCGACACTGGCATGTTGTCCAAgtaagtaacttttcaaatgaagggaccatattgttgctaccacgcatgta Alignment from Pairagon AGTAACCAAGAGCAGGTGTTGCTTCAGGGAGAAGATCGCTTGTACTTGAACTGTGGAGAAGCCTCACAGGCCCAGAATCCGAAGTACTCTTCAGCACGTGCTGAGCGTATGCCCAGGCATGAGAAGAGCCCATTTGCAGATGGAGGTCTGGAGGCTCCGGGATTAAGCACTTTACTTGGTCATCGGCATTGGCATGTTGTGCAG ggtggccaaaaatagaaatgtcttctctcctctcttgttcttttgctcagAGTAACCAGAAACAGGTGTTGCTCCAAGGAGAAGATCGCCTGTACCTGAATTGTGGAGAAGCCTCACAGGCCCTAAATCCAAAGTACTCTTCAGCACGTGCTGAACGTATGCCCAGGCATGAGAAGAGCTCGTTTGCAGATGGAGGGCTGGAAGCTCCAGGGTTAAGTCCTTTGCTTGGTCACCGACACTGGCATGTTGTCCAAgtaagtaacttttcaaatgaagggaccatattgttgctaccacgcatgta Alignment from Exonerate_protein2genome AGTAACCAAGAGCAGGTGTTGCTTCAGGGAGAAGATCGCTTGTACTTGAACTGTGGAGAAGCCTCACAGGCCCAGAATCCGAAGTACTCTTCAGCACGTGCTGAGCGTATGCCCAGGCATGAGAAGAGCCCATTTGCAGATGGAGGTCTGGAGGCTCCGGGATTAAGCACTTTACTTGGTCATCGGCATTGGCATGTTGTGCAG ggtggccaaaaatagaaatgtcttctctcctctcttgttcttttgctcagAGTAACCAGAAACAGGTGTTGCTCCAAGGAGAAGATCGCCTGTACCTGAATTGTGGAGAAGCCTCACAGGCCCTAAATCCAAAGTACTCTTCAGCACGTGCTGAACGTATGCCCAGGCATGAGAAGAGCTCGTTTGCAGATGGAGGGCTGGAAGCTCCAGGGTTAAGTCCTTTGCTTGGTCACCGACACTGGCATGTTGTCCAAgtaagtaacttttcaaatgaagggaccatattgttgctaccacgcatgta Alignment from Exonerate_coding2genome AGTAACCAAGAGCAGGTGTTGCTTCAGGGAGAAGATCGCTTGTACTTGAACTGTGGAGAAGCCTCACAGGCCCAGAATCCGAAGTACTCTTCAGCACGTGCTGAGCGTATGCCCAGGCATGAGAAGAGCCCATTTGCAGATGGAGGTCTGGAGGCTCCGGGATTAAGCACTTTACTTGGTCATCGGCATTGGCATGTTGTGCAG ggtggccaaaaatagaaatgtcttctctcctctcttgttcttttgctcagAGTAACCAGAAACAGGTGTTGCTCCAAGGAGAAGATCGCCTGTACCTGAATTGTGGAGAAGCCTCACAGGCCCTAAATCCAAAGTACTCTTCAGCACGTGCTGAACGTATGCCCAGGCATGAGAAGAGCTCGTTTGCAGATGGAGGGCTGGAAGCTCCAGGGTTAAGTCCTTTGCTTGGTCACCGACACTGGCATGTTGTCCAAgtaagtaacttttcaaatgaagggaccatattgttgctaccacgcatgta Alignment from GeneWise AGTAACCAAGAGCAGGTGTTGCTTCAGGGAGAAGATCGCTTGTACTTGAACTGTGGAGAAGCCTCACAGGCCCAGAATCCGAAGTACTCTTCAGCACGTGCTGAGCGTATGCCCAGGCATGAGAAGAGCCCATTTGCAGATGGAGGTCTGGAGGCTCCGGGATTAAGCACTTTACTTGGTCATCGGCATTGGCATGTTGTGCAG ggtggccaaaaatagaaatgtcttctctcctctcttgttcttttgctcagAGTAACCAGAAACAGGTGTTGCTCCAAGGAGAAGATCGCCTGTACCTGAATTGTGGAGAAGCCTCACAGGCCCTAAATCCAAAGTACTCTTCAGCACGTGCTGAACGTATGCCCAGGCATGAGAAGAGCTCGTTTGCAGATGGAGGGCTGGAAGCTCCAGGGTTAAGTCCTTTGCTTGGTCACCGACACTGGCATGTTGTCCAAgtaagtaacttttcaaatgaagggaccatattgttgctaccacgcatgta #### C030046E11Rik_ID6302_16 --> 0 - 2 Original Alignment CTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCTCATGTCACCAAAGCACCAATGGAAACATTACTGCTTAGTGTCTTCCGCGACATGGTGGTAGTGTTTCGAGCAGACTGTTCAATATGCCTTTACAGTATTGAAAGAAAATCCGATgg tgacctgatactcacttctcttgctacagaaagtattctgttttatgcagCTCCGAATCTACCTACGGACATCAAACCTGGACAATGCCTTTGCACATGTTACCAAAGCAACAATGGAAACGTTACTGCTGAGTGTCTTCCGTGACATGGTAGTAGTCTTTAGAGCAGACTGTCCAATATGCCTGTACAGTATTGAAAGAAAGTCAGATgggtgagtaaggatggtgttctggcctaagtgattatccagtctaaccttcc Alignment from CESAR CTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCTCATGTCACCAAAGCACCAATGGAAACATTACTGCTTAGTGTCTTCCGCGACATGGTGGTAGTGTTTCGAGCAGACTGTTCAATATGCCTTTACAGTATTGAAAGAAAATCCGATgg tgacctgatactcacttctcttgctacagaaagtattctgttttatgcagCTCCGAATCTACCTACGGACATCAAACCTGGACAATGCCTTTGCACATGTTACCAAAGCAACAATGGAAACGTTACTGCTGAGTGTCTTCCGTGACATGGTAGTAGTCTTTAGAGCAGACTGTCCAATATGCCTGTACAGTATTGAAAGAAAGTCAGATgggtgagtaaggatggtgttctggcctaagtgattatccagtctaaccttcc Alignment from Spaln_aa2Genome CTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCTCATGTCACCAAAGCACCAATGGAAACATTACTGCTTAGTGTCTTCCGCGACATGGTGGTAGTGTTTCGAGCAGACTGTTCAATATGCCTTTACAGTATTGAAAGAAAATCCGATGG tgacctgatactcacttctcttgctacagaaagtattctgttttatgcagCTCCGAATCTACCTACGGACATCAAACCTGGACAATGCCTTTGCACATGTTACCAAAGCAACAATGGAAACGTTACTGCTGAGTGTCTTCCGTGACATGGTAGTAGTCTTTAGAGCAGACTGTCCAATATGCCTGTACAGTATTGAAAGAAAGTCAGATGGgtgagtaaggatggtgttctggcctaagtgattatccagtctaaccttcc Alignment from Spaln_nt2Genome CTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCTCATGTCACCAAAGCACCAATGGAAACATTACTGCTTAGTGTCTTCCGCGACATGGTGGTAGTGTTTCGAGCAGACTGTTCAATATGCCTTTACAGTATTGAAAGAAAATCCGATGG tgacctgatactcacttctcttgctacagaaagtattctgttttatgcagCTCCGAATCTACCTACGGACATCAAACCTGGACAATGCCTTTGCACATGTTACCAAAGCAACAATGGAAACGTTACTGCTGAGTGTCTTCCGTGACATGGTAGTAGTCTTTAGAGCAGACTGTCCAATATGCCTGTACAGTATTGAAAGAAAGTCAGATGGgtgagtaaggatggtgttctggcctaagtgattatccagtctaaccttcc Alignment from Pairagon CTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCTCATGTCACCAAAGCACCAATGGAAACATTACTGCTTAGTGTCTTCCGCGACATGGTGGTAGTGTTTCGAGCAGACTGTTCAATATGCCTTTACAGTATTGAAAGAAAATCCGATGG tgacctgatactcacttctcttgctacagaaagtattctgttttatgcagCTCCGAATCTACCTACGGACATCAAACCTGGACAATGCCTTTGCACATGTTACCAAAGCAACAATGGAAACGTTACTGCTGAGTGTCTTCCGTGACATGGTAGTAGTCTTTAGAGCAGACTGTCCAATATGCCTGTACAGTATTGAAAGAAAGTCAGATGGgtgagtaaggatggtgttctggcctaagtgattatccagtctaaccttcc Alignment from Exonerate_protein2genome CTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCTCATGTCACCAAAGCACCAATGGAAACATTACTGCTTAGTGTCTTCCGCGACATGGTGGTAGTGTTTCGAGCAGACTGTTCAATATGCCTTTACAGTATTGAAAGAAAATCCGATGG tgacctgatactcacttctcttgctacagaaagtattctgttttatgcagCTCCGAATCTACCTACGGACATCAAACCTGGACAATGCCTTTGCACATGTTACCAAAGCAACAATGGAAACGTTACTGCTGAGTGTCTTCCGTGACATGGTAGTAGTCTTTAGAGCAGACTGTCCAATATGCCTGTACAGTATTGAAAGAAAGTCAGATGGgtgagtaaggatggtgttctggcctaagtgattatccagtctaaccttcc Alignment from Exonerate_coding2genome CTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCTCATGTCACCAAAGCACCAATGGAAACATTACTGCTTAGTGTCTTCCGCGACATGGTGGTAGTGTTTCGAGCAGACTGTTCAATATGCCTTTACAGTATTGAAAGAAAATCCGATGG tgacctgatactcacttctcttgctacagaaagtattctgttttatgcagCTCCGAATCTACCTACGGACATCAAACCTGGACAATGCCTTTGCACATGTTACCAAAGCAACAATGGAAACGTTACTGCTGAGTGTCTTCCGTGACATGGTAGTAGTCTTTAGAGCAGACTGTCCAATATGCCTGTACAGTATTGAAAGAAAGTCAGATGGgtgagtaaggatggtgttctggcctaagtgattatccagtctaaccttcc Alignment from GeneWise CTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCTCATGTCACCAAAGCACCAATGGAAACATTACTGCTTAGTGTCTTCCGCGACATGGTGGTAGTGTTTCGAGCAGACTGTTCAATATGCCTTTACAGTATTGAAAGAAAATCCGATGG tgacctgatactcacttctcttgctacagaaagtattctgttttatgcagCTCCGAATCTACCTACGGACATCAAACCTGGACAATGCCTTTGCACATGTTACCAAAGCAACAATGGAAACGTTACTGCTGAGTGTCTTCCGTGACATGGTAGTAGTCTTTAGAGCAGACTGTCCAATATGCCTGTACAGTATTGAAAGAAAGTCAGATGGgtgagtaaggatggtgttctggcctaagtgattatccagtctaaccttcc #### C030046E11Rik_ID6306_20 --> 0 - 0 Original Alignment AATATGGAAGTCCCAGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGCAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAG agaaaatgtaatatttcacacaatcagatgacagaccctatcccctgcagAATATGGAAGTGCCTCCAGTGAGTAGGCAG---TCTACACTGCTATTCAACACAGCACTGGAACAAGAAAAATGGGACCTATGCCGACACATGATTCGGTTTCTTAAAGCTATAGGTTCTGGTGAATCTGAGACCCCTCCATCCACACCTACATCTCAGgtgagtataataaagtttacagacttttggtgcagttttcaaagagctag Alignment from CESAR AATATGGAAGTCCCAGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGCAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAG agaaaatgtaatatttcacacaatcagatgacagaccctatcccctgcagAATATGGAAGTGCCTCCAGTGAGTAGGCAG---TCTACACTGCTATTCAACACAGCACTGGAACAAGAAAAATGGGACCTATGCCGACACATGATTCGGTTTCTTAAAGCTATAGGTTCTGGTGAATCTGAGACCCCTCCATCCACACCTACATCTCAGgtgagtataataaagtttacagacttttggtgcagttttcaaagagctag Alignment from Spaln_aa2Genome AATATGGAAGTCCCAGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGCAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAG agaaaatgtaatatttcacacaatcagatgacagaccctatcccctgcagAATATGGAAGTGCCTCCAGTGAGTAGGCAG---TCTACACTGCTATTCAACACAGCACTGGAACAAGAAAAATGGGACCTATGCCGACACATGATTCGGTTTCTTAAAGCTATAGGTTCTGGTGAATCTGAGACCCCTCCATCCACACCTACATCTCAGgtgagtataataaagtttacagacttttggtgcagttttcaaagagctag Alignment from Spaln_nt2Genome AATATGGAAGTCCCAGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGCAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAG agaaaatgtaatatttcacacaatcagatgacagaccctatcccctgcagAATATGGAAGTGCCTCCAGTGAGTAGGCAG---TCTACACTGCTATTCAACACAGCACTGGAACAAGAAAAATGGGACCTATGCCGACACATGATTCGGTTTCTTAAAGCTATAGGTTCTGGTGAATCTGAGACCCCTCCATCCACACCTACATCTCAGgtgagtataataaagtttacagacttttggtgcagttttcaaagagctag Alignment from Pairagon AATATGGAAGTCCCAGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGCAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAG agaaaatgtaatatttcacacaatcagatgacagaccctatcccctgcagAATATGGAAGTGCCTCCAGTGAGTAGGCAGT---CTACACTGCTATTCAACACAGCACTGGAACAAGAAAAATGGGACCTATGCCGACACATGATTCGGTTTCTTAAAGCTATAGGTTCTGGTGAATCTGAGACCCCTCCATCCACACCTACATCTCAGgtgagtataataaagtttacagacttttggtgcagttttcaaagagctag Alignment from Exonerate_protein2genome AATATGGAAGTCCCAGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGCAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAG agaaaatgtaatatttcacacaatcagatgacagaccctatcccctgcagAATATGGAAGTGCCTCCAGTGAGTAGGCAG---TCTACACTGCTATTCAACACAGCACTGGAACAAGAAAAATGGGACCTATGCCGACACATGATTCGGTTTCTTAAAGCTATAGGTTCTGGTGAATCTGAGACCCCTCCATCCACACCTACATCTCAGgtgagtataataaagtttacagacttttggtgcagttttcaaagagctag Alignment from Exonerate_coding2genome AATATGGAAGTCCCAGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGCAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAG agaaaatgtaatatttcacacaatcagatgacagaccctatcccctgcagAATATGGAAGTGCCTCCAGTGAGTAGGCAG---TCTACACTGCTATTCAACACAGCACTGGAACAAGAAAAATGGGACCTATGCCGACACATGATTCGGTTTCTTAAAGCTATAGGTTCTGGTGAATCTGAGACCCCTCCATCCACACCTACATCTCAGgtgagtataataaagtttacagacttttggtgcagttttcaaagagctag Alignment from GeneWise AATATGGAAGTCCCAGCAGTAAGTAGGCAGCATGCTACCCTGCTGTTCAACACAGCACTGGAACAGGGCAAATGGGACCTGTGCCGACACATGATTCGATTTCTTAAAGCCATTGGTTCTGGAGAATCTGAGACCCCTCCATCCACACCTACATCTCAG agaaaatgtaatatttcacacaatcagatgacagaccctatcccctgcagAATATGGAAGTGCCTCCAGTGAGTAGGCAG---TCTACACTGCTATTCAACACAGCACTGGAACAAGAAAAATGGGACCTATGCCGACACATGATTCGGTTTCTTAAAGCTATAGGTTCTGGTGAATCTGAGACCCCTCCATCCACACCTACATCTCAGgtgagtataataaagtttacagacttttggtgcagttttcaaagagctag #### C030046E11Rik_ID6307_21 --> 0 - 2 Original Alignment GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAag caaagagctagcttctttggttgcacttctcagcctctgtcttccctcagGAGCCAAGCTCCAGTGGTGGTTTTGAGTTTTTCCGGAACCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCCCCTGGCAAATTCGGATTACAAAAAACATTAAGTATACCAACTGGTCCGTCTGGGAAGcggtaagtaaccagattttaagcagtaatgtaaaatatttattgtctgggag Alignment from CESAR GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAag caaagagctagcttctttggttgcacttctcagcctctgtcttccctcagGAGCCAAGCTCCAGTGGTGGTTTTGAGTTTTTCCGGAACCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCCCCTGGCAAATTCGGATTACAAAAAACATTAAGTATACCAACTGGTCCGTCTGGGAAGcggtaagtaaccagattttaagcagtaatgtaaaatatttattgtctgggag Alignment from Spaln_aa2Genome GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG caaagagctagcttctttggttgcacttctcagcctctgtcttccctcagGAGCCAAGCTCCAGTGGTGGTTTTGAGTTTTTCCGGAACCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCCCCTGGCAAATTCGGATTACAAAAAACATTAAGTATACCAACTGGTCCGTCTGGGAAGCGgtaagtaaccagattttaagcagtaatgtaaaatatttattgtctgggag Alignment from Spaln_nt2Genome GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG caaagagctagcttctttggttgcacttctcagcctctgtcttccctcagGAGCCAAGCTCCAGTGGTGGTTTTGAGTTTTTCCGGAACCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCCCCTGGCAAATTCGGATTACAAAAAACATTAAGTATACCAACTGGTCCGTCTGGGAAGCGgtaagtaaccagattttaagcagtaatgtaaaatatttattgtctgggag Alignment from Pairagon GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG caaagagctagcttctttggttgcacttctcagcctctgtcttccctcagGAGCCAAGCTCCAGTGGTGGTTTTGAGTTTTTCCGGAACCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCCCCTGGCAAATTCGGATTACAAAAAACATTAAGTATACCAACTGGTCCGTCTGGGAAGCGgtaagtaaccagattttaagcagtaatgtaaaatatttattgtctgggag Alignment from Exonerate_protein2genome GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG caaagagctagcttctttggttgcacttctcagcctctgtcttccctcagGAGCCAAGCTCCAGTGGTGGTTTTGAGTTTTTCCGGAACCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCCCCTGGCAAATTCGGATTACAAAAAACATTAAGTATACCAACTGGTCCGTCTGGGAAGCGgtaagtaaccagattttaagcagtaatgtaaaatatttattgtctgggag Alignment from Exonerate_coding2genome GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG caaagagctagcttctttggttgcacttctcagcctctgtcttccctcagGAGCCAAGCTCCAGTGGTGGTTTTGAGTTTTTCCGGAACCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCCCCTGGCAAATTCGGATTACAAAAAACATTAAGTATACCAACTGGTCCGTCTGGGAAGCGgtaagtaaccagattttaagcagtaatgtaaaatatttattgtctgggag Alignment from GeneWise GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG caaagagctagcttctttggttgcacttctcagcctctgtcttccctcagGAGCCAAGCTCCAGTGGTGGTTTTGAGTTTTTCCGGAACCGGAGTATCAGCTTATCCCAGTCAGCTGAGAATGTTCCCCCTGGCAAATTCGGATTACAAAAAACATTAAGTATACCAACTGGTCCGTCTGGGAAGCGgtaagtaaccagattttaagcagtaatgtaaaatatttattgtctgggag #### C030046E11Rik_ID6308_22 --> 1 - 1 Original Alignment aTGGAGCAAAGACAGTGAATGTGCTGAGAACATGTATATTGACATGATGCTGTGGAGACATGCGCGGCGCCTCCTAGAAGAGGTGCGCTTAAAGGACCTTGGCTGCTTTGCAGCCCAGCTAGGCTTTGAACTGATCAGTTGGCTTTGCAAAGAACGTACCCGAGCTGCCCGTGTAGACAACTTTGTAGTAGCCCTGAAGAGACTTCACAAGGATTTCCTGTGGCCACTTCCCATTATCCCAGCCTCTTCCATAAGTTCCCCTTTCAAAAATGGGAAATGCCGAGCAg aaatggaataagtgcccccaccctgtgcagccttgtcaccttgtcaccagaTGGAGTAGAGAAAGTGAATGTGCAGAGAACATGTATATTGACATGATGTTGTGGAGACATGCACGGCGCCTCCTAGAAGAGATACGTTTAAAGGACCTCCACTGCTTTGCAGCGCAGTTAGGCTTTGAACTGATTAGTTGGCTTTGCAAAGAACGGACCTGGGCTGCCCGGGTGGACAACTTTGTAGTAGCCCTGAAGAGACTTCACAAGGACTTCCTATGGCCTCTGCCCATTGTGCCAGCTTCTTCCATTAGTTGCCCTTTCAAAAATGGAAAATGCCGAGCAggtgagttacttctaataagcgtatgcaataagtgtaacacacagatccaa Alignment from CESAR aTGGAGCAAAGACAGTGAATGTGCTGAGAACATGTATATTGACATGATGCTGTGGAGACATGCGCGGCGCCTCCTAGAAGAGGTGCGCTTAAAGGACCTTGGCTGCTTTGCAGCCCAGCTAGGCTTTGAACTGATCAGTTGGCTTTGCAAAGAACGTACCCGAGCTGCCCGTGTAGACAACTTTGTAGTAGCCCTGAAGAGACTTCACAAGGATTTCCTGTGGCCACTTCCCATTATCCCAGCCTCTTCCATAAGTTCCCCTTTCAAAAATGGGAAATGCCGAGCAg aaatggaataagtgcccccaccctgtgcagccttgtcaccttgtcaccagaTGGAGTAGAGAAAGTGAATGTGCAGAGAACATGTATATTGACATGATGTTGTGGAGACATGCACGGCGCCTCCTAGAAGAGATACGTTTAAAGGACCTCCACTGCTTTGCAGCGCAGTTAGGCTTTGAACTGATTAGTTGGCTTTGCAAAGAACGGACCTGGGCTGCCCGGGTGGACAACTTTGTAGTAGCCCTGAAGAGACTTCACAAGGACTTCCTATGGCCTCTGCCCATTGTGCCAGCTTCTTCCATTAGTTGCCCTTTCAAAAATGGAAAATGCCGAGCAggtgagttacttctaataagcgtatgcaataagtgtaacacacagatccaa Alignment from Spaln_aa2Genome ATGGAGCAAAGACAGTGAATGTGCTGAGAACATGTATATTGACATGATGCTGTGGAGACATGCGCGGCGCCTCCTAGAAGAGGTGCGCTTAAAGGACCTTGGCTGCTTTGCAGCCCAGCTAGGCTTTGAACTGATCAGTTGGCTTTGCAAAGAACGTACCCGAGCTGCCCGTGTAGACAACTTTGTAGTAGCCCTGAAGAGACTTCACAAGGATTTCCTGTGGCCACTTCCCATTATCCCAGCCTCTTCCATAAGTTCCCCTTTCAAAAATGGGAAATGCCGAGCAG aaatggaataagtgcccccaccctgtgcagccttgtcaccttgtcaccagATGGAGTAGAGAAAGTGAATGTGCAGAGAACATGTATATTGACATGATGTTGTGGAGACATGCACGGCGCCTCCTAGAAGAGATACGTTTAAAGGACCTCCACTGCTTTGCAGCGCAGTTAGGCTTTGAACTGATTAGTTGGCTTTGCAAAGAACGGACCTGGGCTGCCCGGGTGGACAACTTTGTAGTAGCCCTGAAGAGACTTCACAAGGACTTCCTATGGCCTCTGCCCATTGTGCCAGCTTCTTCCATTAGTTGCCCTTTCAAAAATGGAAAATGCCGAGCAGgtgagttacttctaataagcgtatgcaataagtgtaacacacagatccaa Alignment from Spaln_nt2Genome ATGGAGCAAAGACAGTGAATGTGCTGAGAACATGTATATTGACATGATGCTGTGGAGACATGCGCGGCGCCTCCTAGAAGAGGTGCGCTTAAAGGACCTTGGCTGCTTTGCAGCCCAGCTAGGCTTTGAACTGATCAGTTGGCTTTGCAAAGAACGTACCCGAGCTGCCCGTGTAGACAACTTTGTAGTAGCCCTGAAGAGACTTCACAAGGATTTCCTGTGGCCACTTCCCATTATCCCAGCCTCTTCCATAAGTTCCCCTTTCAAAAATGGGAAATGCCGAGCAG aaatggaataagtgcccccaccctgtgcagccttgtcaccttgtcaccagATGGAGTAGAGAAAGTGAATGTGCAGAGAACATGTATATTGACATGATGTTGTGGAGACATGCACGGCGCCTCCTAGAAGAGATACGTTTAAAGGACCTCCACTGCTTTGCAGCGCAGTTAGGCTTTGAACTGATTAGTTGGCTTTGCAAAGAACGGACCTGGGCTGCCCGGGTGGACAACTTTGTAGTAGCCCTGAAGAGACTTCACAAGGACTTCCTATGGCCTCTGCCCATTGTGCCAGCTTCTTCCATTAGTTGCCCTTTCAAAAATGGAAAATGCCGAGCAGgtgagttacttctaataagcgtatgcaataagtgtaacacacagatccaa Alignment from Pairagon ATGGAGCAAAGACAGTGAATGTGCTGAGAACATGTATATTGACATGATGCTGTGGAGACATGCGCGGCGCCTCCTAGAAGAGGTGCGCTTAAAGGACCTTGGCTGCTTTGCAGCCCAGCTAGGCTTTGAACTGATCAGTTGGCTTTGCAAAGAACGTACCCGAGCTGCCCGTGTAGACAACTTTGTAGTAGCCCTGAAGAGACTTCACAAGGATTTCCTGTGGCCACTTCCCATTATCCCAGCCTCTTCCATAAGTTCCCCTTTCAAAAATGGGAAATGCCGAGCAG aaatggaataagtgcccccaccctgtgcagccttgtcaccttgtcaccagATGGAGTAGAGAAAGTGAATGTGCAGAGAACATGTATATTGACATGATGTTGTGGAGACATGCACGGCGCCTCCTAGAAGAGATACGTTTAAAGGACCTCCACTGCTTTGCAGCGCAGTTAGGCTTTGAACTGATTAGTTGGCTTTGCAAAGAACGGACCTGGGCTGCCCGGGTGGACAACTTTGTAGTAGCCCTGAAGAGACTTCACAAGGACTTCCTATGGCCTCTGCCCATTGTGCCAGCTTCTTCCATTAGTTGCCCTTTCAAAAATGGAAAATGCCGAGCAGgtgagttacttctaataagcgtatgcaataagtgtaacacacagatccaa Alignment from Exonerate_protein2genome ATGGAGCAAAGACAGTGAATGTGCTGAGAACATGTATATTGACATGATGCTGTGGAGACATGCGCGGCGCCTCCTAGAAGAGGTGCGCTTAAAGGACCTTGGCTGCTTTGCAGCCCAGCTAGGCTTTGAACTGATCAGTTGGCTTTGCAAAGAACGTACCCGAGCTGCCCGTGTAGACAACTTTGTAGTAGCCCTGAAGAGACTTCACAAGGATTTCCTGTGGCCACTTCCCATTATCCCAGCCTCTTCCATAAGTTCCCCTTTCAAAAATGGGAAATGCCGAGCAG aaatggaataagtgcccccaccctgtgcagccttgtcaccttgtcaccagATGGAGTAGAGAAAGTGAATGTGCAGAGAACATGTATATTGACATGATGTTGTGGAGACATGCACGGCGCCTCCTAGAAGAGATACGTTTAAAGGACCTCCACTGCTTTGCAGCGCAGTTAGGCTTTGAACTGATTAGTTGGCTTTGCAAAGAACGGACCTGGGCTGCCCGGGTGGACAACTTTGTAGTAGCCCTGAAGAGACTTCACAAGGACTTCCTATGGCCTCTGCCCATTGTGCCAGCTTCTTCCATTAGTTGCCCTTTCAAAAATGGAAAATGCCGAGCAGgtgagttacttctaataagcgtatgcaataagtgtaacacacagatccaa Alignment from Exonerate_coding2genome ATGGAGCAAAGACAGTGAATGTGCTGAGAACATGTATATTGACATGATGCTGTGGAGACATGCGCGGCGCCTCCTAGAAGAGGTGCGCTTAAAGGACCTTGGCTGCTTTGCAGCCCAGCTAGGCTTTGAACTGATCAGTTGGCTTTGCAAAGAACGTACCCGAGCTGCCCGTGTAGACAACTTTGTAGTAGCCCTGAAGAGACTTCACAAGGATTTCCTGTGGCCACTTCCCATTATCCCAGCCTCTTCCATAAGTTCCCCTTTCAAAAATGGGAAATGCCGAGCAG aaatggaataagtgcccccaccctgtgcagccttgtcaccttgtcaccagATGGAGTAGAGAAAGTGAATGTGCAGAGAACATGTATATTGACATGATGTTGTGGAGACATGCACGGCGCCTCCTAGAAGAGATACGTTTAAAGGACCTCCACTGCTTTGCAGCGCAGTTAGGCTTTGAACTGATTAGTTGGCTTTGCAAAGAACGGACCTGGGCTGCCCGGGTGGACAACTTTGTAGTAGCCCTGAAGAGACTTCACAAGGACTTCCTATGGCCTCTGCCCATTGTGCCAGCTTCTTCCATTAGTTGCCCTTTCAAAAATGGAAAATGCCGAGCAGgtgagttacttctaataagcgtatgcaataagtgtaacacacagatccaa Alignment from GeneWise ATGGAGCAAAGACAGTGAATGTGCTGAGAACATGTATATTGACATGATGCTGTGGAGACATGCGCGGCGCCTCCTAGAAGAGGTGCGCTTAAAGGACCTTGGCTGCTTTGCAGCCCAGCTAGGCTTTGAACTGATCAGTTGGCTTTGCAAAGAACGTACCCGAGCTGCCCGTGTAGACAACTTTGTAGTAGCCCTGAAGAGACTTCACAAGGATTTCCTGTGGCCACTTCCCATTATCCCAGCCTCTTCCATAAGTTCCCCTTTCAAAAATGGGAAATGCCGAGCAG aaatggaataagtgcccccaccctgtgcagccttgtcaccttgtcaccagATGGAGTAGAGAAAGTGAATGTGCAGAGAACATGTATATTGACATGATGTTGTGGAGACATGCACGGCGCCTCCTAGAAGAGATACGTTTAAAGGACCTCCACTGCTTTGCAGCGCAGTTAGGCTTTGAACTGATTAGTTGGCTTTGCAAAGAACGGACCTGGGCTGCCCGGGTGGACAACTTTGTAGTAGCCCTGAAGAGACTTCACAAGGACTTCCTATGGCCTCTGCCCATTGTGCCAGCTTCTTCCATTAGTTGCCCTTTCAAAAATGGAAAATGCCGAGCAGgtgagttacttctaataagcgtatgcaataagtgtaacacacagatccaa #### C030046E11Rik_ID6309_23 --> 2 - 1 Original Alignment tgGGAGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGACGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGACACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAg attccctgaatttttgataaattaatttcctaactgtttgactgccgtagtaGGTGAGCATATGCTGAAATCCCAGTTGGCTGACCCATTCATCACCCCTGAAATGGATGCAGGCATTTCTAACATTCATCGTAGCCAGAGTGGACTCAGTAACATTGGCCCCACCCATCGGGACACAGATAGAGCCTCATCTCCTGGGCCACAAATGCAAGATGCATTCTTGACTCCTCTATCTAATAAAggtgagccacgctgggcaacagcagctgcttttattccactacacgggcaa Alignment from CESAR tgGGAGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGACGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGACACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAg attccctgaatttttgataaattaatttcctaactgtttgactgccgtagtaGGTGAGCATATGCTGAAATCCCAGTTGGCTGACCCATTCATCACCCCTGAAATGGATGCAGGCATTTCTAACATTCATCGTAGCCAGAGTGGACTCAGTAACATTGGCCCCACCCATCGGGACACAGATAGAGCCTCATCTCCTGGGCCACAAATGCAAGATGCATTCTTGACTCCTCTATCTAATAAAggtgagccacgctgggcaacagcagctgcttttattccactacacgggcaa Alignment from Spaln_aa2Genome TGGGAGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGACGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGACACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAG attccctgaatttttgataaattaatttcctaactgtttgactgccgtagTAGGTGAGCATATGCTGAAATCCCAGTTGGCTGACCCATTCATCACCCCTGAAATGGATGCAGGCATTTCTAACATTCATCGTAGCCAGAGTGGACTCAGTAACATTGGCCCCACCCATCGGGACACAGATAGAGCCTCATCTCCTGGGCCACAAATGCAAGATGCATTCTTGACTCCTCTATCTAATAAAGgtgagccacgctgggcaacagcagctgcttttattccactacacgggcaa Alignment from Spaln_nt2Genome TGGGAGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGACGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGACACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAG attccctgaatttttgataaattaatttcctaactgtttgactgccgtagTAGGTGAGCATATGCTGAAATCCCAGTTGGCTGACCCATTCATCACCCCTGAAATGGATGCAGGCATTTCTAACATTCATCGTAGCCAGAGTGGACTCAGTAACATTGGCCCCACCCATCGGGACACAGATAGAGCCTCATCTCCTGGGCCACAAATGCAAGATGCATTCTTGACTCCTCTATCTAATAAAGgtgagccacgctgggcaacagcagctgcttttattccactacacgggcaa Alignment from Pairagon TGGGAGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGACGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGACACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAG attccctgaatttttgataaattaatttcctaactgtttgactgccgtagTAGGTGAGCATATGCTGAAATCCCAGTTGGCTGACCCATTCATCACCCCTGAAATGGATGCAGGCATTTCTAACATTCATCGTAGCCAGAGTGGACTCAGTAACATTGGCCCCACCCATCGGGACACAGATAGAGCCTCATCTCCTGGGCCACAAATGCAAGATGCATTCTTGACTCCTCTATCTAATAAAGgtgagccacgctgggcaacagcagctgcttttattccactacacgggcaa Alignment from Exonerate_protein2genome TGGGAGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGACGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGACACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAG attccctgaatttttgataaattaatttcctaactgtttgactgccgtagTAGGTGAGCATATGCTGAAATCCCAGTTGGCTGACCCATTCATCACCCCTGAAATGGATGCAGGCATTTCTAACATTCATCGTAGCCAGAGTGGACTCAGTAACATTGGCCCCACCCATCGGGACACAGATAGAGCCTCATCTCCTGGGCCACAAATGCAAGATGCATTCTTGACTCCTCTATCTAATAAAGgtgagccacgctgggcaacagcagctgcttttattccactacacgggcaa Alignment from Exonerate_coding2genome TGGGAGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGACGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGACACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAG attccctgaatttttgataaattaatttcctaactgtttgactgccgtagTAGGTGAGCATATGCTGAAATCCCAGTTGGCTGACCCATTCATCACCCCTGAAATGGATGCAGGCATTTCTAACATTCATCGTAGCCAGAGTGGACTCAGTAACATTGGCCCCACCCATCGGGACACAGATAGAGCCTCATCTCCTGGGCCACAAATGCAAGATGCATTCTTGACTCCTCTATCTAATAAAGgtgagccacgctgggcaacagcagctgcttttattccactacacgggcaa Alignment from GeneWise TGGGAGAGCAGATGTTAAAGTCTCAGTCAGCTGACCCTTTTATTACCCCTGAGATGGACGCTGGCATCTCTAACATCCAACGAAGTCAGAGCTGGCTCAGCAACATTGGTCCCACCCATCGTGACACAGACAGAGCCTCATCTCCTGGACCACAAATGCAAGATGCTTTCTTGTCTCCATTATCTAATAAAG attccctgaatttttgataaattaatttcctaactgtttgactgccgtagTAGGTGAGCATATGCTGAAATCCCAGTTGGCTGACCCATTCATCACCCCTGAAATGGATGCAGGCATTTCTAACATTCATCGTAGCCAGAGTGGACTCAGTAACATTGGCCCCACCCATCGGGACACAGATAGAGCCTCATCTCCTGGGCCACAAATGCAAGATGCATTCTTGACTCCTCTATCTAATAAAGgtgagccacgctgggcaacagcagctgcttttattccactacacgggcaa #### Cabp4_ID339_5 --> 0 - 1 Original Alignment TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATA---GACTTTGACg gaaagtgctctatctagagcatccattgaacctatgtgctttctttctagTTTGATAAGGAGGACAGGGATGGATGGCTCATGGTAGTGGAGTTGCGCCAGGCTCTTCCAGCCCTGCAAGGG------GTAGATGGCACTGAAGTGGATGAAATGTTGCGCAAGACAGCACTTAATGGGGATGGGACCATAGAAGAACTTGATggtaagaaaccctatattcacatcatgcaaacatattgtgaatagttttta Alignment from CESAR TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATAGAC---TTTGACg gaaagtgctctatctagagcatccattgaacctatgtgctttctttctagTTTGATAAGGAGGACAGGGATGGATGGCTCATGGTAGTGGAGTTGCGCCAGGCTCTTCCAGCCCTGCAAGGG------GTAGATGGCACTGAAGTGGATGAAATGTTGCGCAAGACAGCACTTAATGGGGATGGGACCATAGAAGAACTTGATggtaagaaaccctatattcacatcatgcaaacatattgtgaatagttttta Alignment from Spaln_aa2Genome TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATA---GACTTTGACG gaaagtgctctatctagagcatccattgaacctatgtgctttctttctagTTTGATAAGGAGGACAGGGATGGATGGCTCATGGTAGTGGAGTTGCGCCAGGCTCTTCCAGCCCTGCAAGGG------GTAGATGGCACTGAAGTGGATGAAATGTTGCGCAAGACAGCACTTAATGGGGATGGGACCATAGAAGAACTTGATGgtaagaaaccctatattcacatcatgcaaacatattgtgaatagttttta Alignment from Spaln_nt2Genome TTTGACAAGGA---CAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATAGACT---TTGACG gaaagtgctctatctagagcatccattgaacctatgtgctttctttctagTTTGATAAGGAGGACAGGGATGGATGGCTCATGGTAGTGGAGTTGCGCCAGGCTCTTCCAGCCCTGCAAGGGG------TAGATGGCACTGAAGTGGATGAAATGTTGCGCAAGACAGCACTTAATGGGGATGGGACCATAGAAGAACTTGATGgtaagaaaccctatattcacatcatgcaaacatattgtgaatagttttta Alignment from Pairagon TTTGACA---AGGACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATAGA------------------------------------------------------------- gaaagtgctctatctagagcatccattgaacctatgtgctttctttctagTTTGATAAGGAGGACAGGGATGGATGGCTCATGGTAGTGGAGTTGCGCCAGGCTCTTCCAGCCCTGCAAGGGG------TAGATGGCACTGAAGTGGATGAAATGTTGCGCAAGACAGCACTTAATGGGGATGGGACCATAGAAGAACTTGATGGTAAGAAACCCTATATTCACATCATGCAAACATATTGTGAATAGTTTTTA Alignment from Exonerate_protein2genome TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATA---GACTTTGACG gaaagtgctctatctagagcatccattgaacctatgtgctttctttctagTTTGATAAGGAGGACAGGGATGGATGGCTCATGGTAGTGGAGTTGCGCCAGGCTCTTCCAGCCCTGCAAGGG------GTAGATGGCACTGAAGTGGATGAAATGTTGCGCAAGACAGCACTTAATGGGGATGGGACCATAGAAGAACTTGATGgtaagaaaccctatattcacatcatgcaaacatattgtgaatagttttta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATAGAC gaaagtgctctatctagagcatccattgaacctatgtgctttctttctagTTTGATAAGGAGGACAGGGATGGATGGCTCATGGTAGTGGAGTTGCGCCAGGCTCTTCCAGCCCTGCAAGGG------GTAGATGGCACTGAAGTGGATGAAATGTTGCGCAAGACAGCACTTAATGGGGATGGGACCATAGAAgaacttgatggtaagaaaccctatattcacatcatgcaaacatattgtgaatagttttta #### Cabp4_ID342_2 --> 0 - 1 Original Alignment GATCGTGAACTGGGCCCTGAGGAGTTGGAGg ccataatcaggctctgcatggatggcggaaagtttcctccttaaactcagGATCGTGAGCTGGGGCCTGAGGAGTTGGAAggtgagtgactcttcctctttatgagaagcctcggagttgataaaatatct Alignment from CESAR GATCGTGAACTGGGCCCTGAGGAGTTGGAGg ccataatcaggctctgcatggatggcggaaagtttcctccttaaactcagGATCGTGAGCTGGGGCCTGAGGAGTTGGAAggtgagtgactcttcctctttatgagaagcctcggagttgataaaatatct Alignment from Spaln_aa2Genome GATCGTGAACTGGGCCCTGAGGAGTTGGAGG ccataatcaggctctgcatggatggcggaaagtttcctccttaaactcagGATCGTGAGCTGGGGCCTGAGGAGTTGGAAGgtgagtgactcttcctctttatgagaagcctcggagttgataaaatatct Alignment from Spaln_nt2Genome GATCGTGAACTGGGCCCTGAGGAGTTGGAGG ccataatcaggctctgcatggatggcggaaagtttcctccttaaactcagGATCGTGAGCTGGGGCCTGAGGAGTTGGAAGgtgagtgactcttcctctttatgagaagcctcggagttgataaaatatct Alignment from Pairagon GATCGTGAACTGGGCCCTGAGGAGTTGGAGG ccataatcaggctctgcatggatggcggaaagtttcctccttaaactcagGATCGTGAGCTGGGGCCTGAGGAGTTGGAAGgtgagtgactcttcctctttatgagaagcctcggagttgataaaatatct Alignment from Exonerate_protein2genome GATCGTGAACTGGGCCCTGAGGAGTTGGAGG ccataatcaggctctgcatggatggcggaaagtttcctccttaaactcagGATCGTGAGCTGGGGCCTGAGGAGTTGGAAGgtgagtgactcttcctctttatgagaagcctcggagttgataaaatatct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GATCGTGAACTGGGCCCTGAGGAGTTGGAGG ccataatcaggctctgcatggatggcggaaagtttcctccttaaactcagGATCGTGAGCTGGGGCCTGAGGAGTTGGAAGgtgagtgactcttcctctttatgagaagcctcggagttgataaaatatct #### Cacul1_ID13274_8 --> 1 - 1 Original Alignment aGGTGATCAGTCCCGGAAGAGAGCTGGAGATGAGTTGGCTTATa ttgatagtgaaacaagggtgctgcatgactgtgttttactttatttctaggCGA---CATTCCCGAAGAAGGGCTGGAGATGAGTTAGCATATagtaagggacactaccccagtaggtttgtgaaataattcaccctctgaaga Alignment from CESAR aGGTGATCAGTCCCGGAAGAGAGCTGGAGATGAGTTGGCTTATa ttgatagtgaaacaagggtgctgcatgactgtgttttactttatttctaggCGA---CATTCCCGAAGAAGGGCTGGAGATGAGTTAGCATATagtaagggacactaccccagtaggtttgtgaaataattcaccctctgaaga Alignment from Spaln_aa2Genome AGGTGATCAGTCCCGGAAGAGAGCTGGAGATGAGTTGGCTTATA ttgatagtgaaacaagggtgctgcatgactgtgttttactttatttctagGCGA---CATTCCCGAAGAAGGGCTGGAGATGAGTTAGCATATAgtaagggacactaccccagtaggtttgtgaaataattcaccctctgaaga Alignment from Spaln_nt2Genome TGATCAGTCCCGGAAGAGAGCTGGAGATGAGTTGGCTTATA ttgatagtgaaacaagggtgctgcatgactgtgttttactttatttctagGCGACATTCCCGAAGAAGGGCTGGAGATGAGTTAGCATATAgtaagggacactaccccagtaggtttgtgaaataattcaccctctgaaga Alignment from Pairagon AGGTGATCAGTCCCGGAAGAGAGCTGGAGATGAGTTGGCTTATA ttgatagtgaaacaagggtgctgcatgactgtgttttactttatttctaggcgacattcccgaagA------------------AGGGCTGGAGATGAGTTAGCATATAgtaagggacactaccccagtaggtttgtgaaataattcaccctctgaaga Alignment from Exonerate_protein2genome AGGTGATCAGTCCCGGAAGAGAGCTGGAGATGAGTTGGCTTATA ttgatagtgaaacaagggtgctgcatgactgtgttttactttatttctagG---CGACATTCCCGAAGAAGGGCTGGAGATGAGTTAGCATATAgtaagggacactaccccagtaggtttgtgaaataattcaccctctgaaga Alignment from Exonerate_coding2genome AGGTGATCAGTCCCGGAAGAGAGCTGGAGATGAGTTGGCTTATAAC ttgatagtgaaacaagggtgctgcatgactgtgttttactttatttctagG---CGACATTCCCGAAGAAGGGCTGGAGATGAGTTAGCATATAGTaagggacactaccccagtaggtttgtgaaataattcaccctctgaaga Alignment from GeneWise ttgatagtgaaacaagggtgctgcatgactgtgttttactttatttctaggcgacattcccgaagaagggctggagatgagttagcatatagtaagggacactaccccagtaggtttgtgaaataattcaccctctgaaga #### Cacul1_ID13277_5 --> 0 - 1 Original Alignment AATAAGTTTTACATAGAAACTAAGCTTAACAGAGACTTAAAAGATGACCTTATAAAACTGTTTACGGAACATGTTGCAGAGAAGCACATTTACAGCCTAATGc tcctatgcctacatatccagaaaataatcatttggctccgtaatccacagAACAAGTTTTACATAGAAACTAAGCTTAACAGAGACTTAAAAGATGATCTTATAAAACTGTTTACTGAACATGTTGCAGAGAAGCATATTTACAGCCTAATGcgtaacaatgtctctatttcctcgggggtaggtggactggagtcacttagc Alignment from CESAR AATAAGTTTTACATAGAAACTAAGCTTAACAGAGACTTAAAAGATGACCTTATAAAACTGTTTACGGAACATGTTGCAGAGAAGCACATTTACAGCCTAATGc tcctatgcctacatatccagaaaataatcatttggctccgtaatccacagAACAAGTTTTACATAGAAACTAAGCTTAACAGAGACTTAAAAGATGATCTTATAAAACTGTTTACTGAACATGTTGCAGAGAAGCATATTTACAGCCTAATGcgtaacaatgtctctatttcctcgggggtaggtggactggagtcacttagc Alignment from Spaln_aa2Genome AATAAGTTTTACATAGAAACTAAGCTTAACAGAGACTTAAAAGATGACCTTATAAAACTGTTTACGGAACATGTTGCAGAGAAGCACATTTACAGCCTAATGC tcctatgcctacatatccagaaaataatcatttggctccgtaatccacagAACAAGTTTTACATAGAAACTAAGCTTAACAGAGACTTAAAAGATGATCTTATAAAACTGTTTACTGAACATGTTGCAGAGAAGCATATTTACAGCCTAATGCgtaacaatgtctctatttcctcgggggtaggtggactggagtcacttagc Alignment from Spaln_nt2Genome AATAAGTTTTACATAGAAACTAAGCTTAACAGAGACTTAAAAGATGACCTTATAAAACTGTTTACGGAACATGTTGCAGAGAAGCACATTTACAGCCTAATGC tcctatgcctacatatccagaaaataatcatttggctccgtaatccacagAACAAGTTTTACATAGAAACTAAGCTTAACAGAGACTTAAAAGATGATCTTATAAAACTGTTTACTGAACATGTTGCAGAGAAGCATATTTACAGCCTAATGCgtaacaatgtctctatttcctcgggggtaggtggactggagtcacttagc Alignment from Pairagon AATAAGTTTTACATAGAAACTAAGCTTAACAGAGACTTAAAAGATGACCTTATAAAACTGTTTACGGAACATGTTGCAGAGAAGCACATTTACAGCCTAATGC tcctatgcctacatatccagaaaataatcatttggctccgtaatccacagAACAAGTTTTACATAGAAACTAAGCTTAACAGAGACTTAAAAGATGATCTTATAAAACTGTTTACTGAACATGTTGCAGAGAAGCATATTTACAGCCTAATGCgtaacaatgtctctatttcctcgggggtaggtggactggagtcacttagc Alignment from Exonerate_protein2genome AATAAGTTTTACATAGAAACTAAGCTTAACAGAGACTTAAAAGATGACCTTATAAAACTGTTTACGGAACATGTTGCAGAGAAGCACATTTACAGCCTAATGC tcctatgcctacatatccagaaaataatcatttggctccgtaatccacagAACAAGTTTTACATAGAAACTAAGCTTAACAGAGACTTAAAAGATGATCTTATAAAACTGTTTACTGAACATGTTGCAGAGAAGCATATTTACAGCCTAATGCgtaacaatgtctctatttcctcgggggtaggtggactggagtcacttagc Alignment from Exonerate_coding2genome AATAAGTTTTACATAGAAACTAAGCTTAACAGAGACTTAAAAGATGACCTTATAAAACTGTTTACGGAACATGTTGCAGAGAAGCACATTTACAGCCTAATGC tcctatgcctacatatccagaaaataatcatttggctccgtaatccacagAACAAGTTTTACATAGAAACTAAGCTTAACAGAGACTTAAAAGATGATCTTATAAAACTGTTTACTGAACATGTTGCAGAGAAGCATATTTACAGCCTAATGCgtaacaatgtctctatttcctcgggggtaggtggactggagtcacttagc Alignment from GeneWise AATAAGTTTTACATAGAAACTAAGCTTAACAGAGACTTAAAAGATGACCTTATAAAACTGTTTACGGAACATGTTGCAGAGAAGCACATTTACAGCCTAATGC tcctatgcctacatatccagaaaataatcatttggctccgtaatccacagAACAAGTTTTACATAGAAACTAAGCTTAACAGAGACTTAAAAGATGATCTTATAAAACTGTTTACTGAACATGTTGCAGAGAAGCATATTTACAGCCTAATGCgtaacaatgtctctatttcctcgggggtaggtggactggagtcacttagc #### Cacul1_ID13278_4 --> 0 - 0 Original Alignment GCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCTCTGGGACAGTATATGGGAGCATTGCAGAGCATCGTGCCTCTTTTCATATATATG tctgagaggtattggtggtgatgaagctcctgctgtctctctcctaacagGCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCCCTGGGACAGTATATGGGAGCTTTGCAAAGCGTTGTTCCTCTTTCCATATATATGgtagctatagatctccatcgtcttttcttcttcttaaaggatgtaaggtg Alignment from CESAR GCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCTCTGGGACAGTATATGGGAGCATTGCAGAGCATCGTGCCTCTTTTCATATATATG tctgagaggtattggtggtgatgaagctcctgctgtctctctcctaacagGCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCCCTGGGACAGTATATGGGAGCTTTGCAAAGCGTTGTTCCTCTTTCCATATATATGgtagctatagatctccatcgtcttttcttcttcttaaaggatgtaaggtg Alignment from Spaln_aa2Genome GCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCTCTGGGACAGTATATGGGAGCATTGCAGAGCATCGTGCCTCTTTTCATATATATG tctgagaggtattggtggtgatgaagctcctgctgtctctctcctaacagGCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCCCTGGGACAGTATATGGGAGCTTTGCAAAGCGTTGTTCCTCTTTCCATATATATGgtagctatagatctccatcgtcttttcttcttcttaaaggatgtaaggtg Alignment from Spaln_nt2Genome GCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCTCTGGGACAGTATATGGGAGCATTGCAGAGCATCGTGCCTCTTTTCATATATATG tctgagaggtattggtggtgatgaagctcctgctgtctctctcctaacagGCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCCCTGGGACAGTATATGGGAGCTTTGCAAAGCGTTGTTCCTCTTTCCATATATATGgtagctatagatctccatcgtcttttcttcttcttaaaggatgtaaggtg Alignment from Pairagon GCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCTCTGGGACAGTATATGGGAGCATTGCAGAGCATCGTGCCTCTTTTCATATATATG tctgagaggtattggtggtgatgaagctcctgctgtctctctcctaacagGCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCCCTGGGACAGTATATGGGAGCTTTGCAAAGCGTTGTTCCTCTTTCCATATATATGgtagctatagatctccatcgtcttttcttcttcttaaaggatgtaaggtg Alignment from Exonerate_protein2genome GCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCTCTGGGACAGTATATGGGAGCATTGCAGAGCATCGTGCCTCTTTTCATATATATG tctgagaggtattggtggtgatgaagctcctgctgtctctctcctaacagGCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCCCTGGGACAGTATATGGGAGCTTTGCAAAGCGTTGTTCCTCTTTCCATATATATGgtagctatagatctccatcgtcttttcttcttcttaaaggatgtaaggtg Alignment from Exonerate_coding2genome GCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCTCTGGGACAGTATATGGGAGCATTGCAGAGCATCGTGCCTCTTTTCATATATATG tctgagaggtattggtggtgatgaagctcctgctgtctctctcctaacagGCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCCCTGGGACAGTATATGGGAGCTTTGCAAAGCGTTGTTCCTCTTTCCATATATATGgtagctatagatctccatcgtcttttcttcttcttaaaggatgtaaggtg Alignment from GeneWise GCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCTCTGGGACAGTATATGGGAGCATTGCAGAGCATCGTGCCTCTTTTCATATATATG tctgagaggtattggtggtgatgaagctcctgctgtctctctcctaacagGCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCCCTGGGACAGTATATGGGAGCTTTGCAAAGCGTTGTTCCTCTTTCCATATATATGgtagctatagatctccatcgtcttttcttcttcttaaaggatgtaaggtg #### Capn1_ID1357_19 --> 2 - 1 Original Alignment gcTTCAAGCTTAACAAGAAGCTGCATGAACTCATAATCACCCGCTACTCGGAGCCCGACCTGGCCGTGGACTTTGACAACTTTGTGTGCTGTCTTGTGCGGCTGGAGACCATGTTCc gaatcaaatcaccaactcgagcccttacgtccttgctcctgctgttccagatTTCAAGCTAAACAAGAAGCTGCATGAACTCATTGTCACACACCACTCAGAACCAGACTTAGCTGTGGAATTTGACAACTTTGTCTGCTGTCTTGTTCACCTTGAGACAATGTTTtgtgagtgtgtctgtgcaccctgttttctgagttagctggacagatagctg Alignment from CESAR gcTTCAAGCTTAACAAGAAGCTGCATGAACTCATAATCACCCGCTACTCGGAGCCCGACCTGGCCGTGGACTTTGACAACTTTGTGTGCTGTCTTGTGCGGCTGGAGACCATGTTCc gaatcaaatcaccaactcgagcccttacgtccttgctcctgctgttccagatTTCAAGCTAAACAAGAAGCTGCATGAACTCATTGTCACACACCACTCAGAACCAGACTTAGCTGTGGAATTTGACAACTTTGTCTGCTGTCTTGTTCACCTTGAGACAATGTTTtgtgagtgtgtctgtgcaccctgttttctgagttagctggacagatagctg Alignment from Spaln_aa2Genome GCTTCAAGCTTAACAAGAAGCTGCATGAACTCATAATCACCCGCTACTCGGAGCCCGACCTGGCCGTGGACTTTGACAACTTTGTGTGCTGTCTTGTGCGGCTGGAGACCATGTTCC gaatcaaatcaccaactcgagcccttacgtccttgctcctgctgttccagATTTCAAGCTAAACAAGAAGCTGCATGAACTCATTGTCACACACCACTCAGAACCAGACTTAGCTGTGGAATTTGACAACTTTGTCTGCTGTCTTGTTCACCTTGAGACAATGTTTTgtgagtgtgtctgtgcaccctgttttctgagttagctggacagatagctg Alignment from Spaln_nt2Genome GCTTCAAGCTTAACAAGAAGCTGCATGAACTCATAATCACCCGCTACTCGGAGCCCGACCTGGCCGTGGACTTTGACAACTTTGTGTGCTGTCTTGTGCGGCTGGAGACCATGTTCC gaatcaaatcaccaactcgagcccttacgtccttgctcctgctgttccagATTTCAAGCTAAACAAGAAGCTGCATGAACTCATTGTCACACACCACTCAGAACCAGACTTAGCTGTGGAATTTGACAACTTTGTCTGCTGTCTTGTTCACCTTGAGACAATGTTTTgtgagtgtgtctgtgcaccctgttttctgagttagctggacagatagctg Alignment from Pairagon GCTTCAAGCTTAACAAGAAGCTGCATGAACTCATAATCACCCGCTACTCGGAGCCCGACCTGGCCGTGGACTTTGACAACTTTGTGTGCTGTCTTGTGCGGCTGGAGACCATGTTCC gaatcaaatcaccaactcgagcccttacgtccttgctcctgctgttccagATTTCAAGCTAAACAAGAAGCTGCATGAACTCATTGTCACACACCACTCAGAACCAGACTTAGCTGTGGAATTTGACAACTTTGTCTGCTGTCTTGTTCACCTTGAGACAATGTTTTgtgagtgtgtctgtgcaccctgttttctgagttagctggacagatagctg Alignment from Exonerate_protein2genome GCTTCAAGCTTAACAAGAAGCTGCATGAACTCATAATCACCCGCTACTCGGAGCCCGACCTGGCCGTGGACTTTGACAACTTTGTGTGCTGTCTTGTGCGGCTGGAGACCATGTTCC gaatcaaatcaccaactcgagcccttacgtccttgctcctgctgttccagATTTCAAGCTAAACAAGAAGCTGCATGAACTCATTGTCACACACCACTCAGAACCAGACTTAGCTGTGGAATTTGACAACTTTGTCTGCTGTCTTGTTCACCTTGAGACAATGTTTTgtgagtgtgtctgtgcaccctgttttctgagttagctggacagatagctg Alignment from Exonerate_coding2genome gaatcaaatcaccaactcgagcccttacgtccttgctcctgctgttccagatttcaagctaaacaagaagctgcatgaactcattgtcacacaccactcagaaccagacttagctgtggaatttgacaactttgtctgctgtcttgttcaccttgagacaatgttttgtgagtgtgtctgtgcaccctgttttctgagttagctggacagatagctg Alignment from GeneWise GCTTCAAGCTTAACAAGAAGCTGCATGAACTCATAATCACCCGCTACTCGGAGCCCGACCTGGCCGTGGACTTTGACAACTTTGTGTGCTGTCTTGTGCGGCTGGAGACCATGTTCC gaatcaaatcaccaactcgagcccttacgtccttgctcctgctgttccagATTTCAAGCTAAACAAGAAGCTGCATGAACTCATTGTCACACACCACTCAGAACCAGACTTAGCTGTGGAATTTGACAACTTTGTCTGCTGTCTTGTTCACCTTGAGACAATGTTTTgtgagtgtgtctgtgcaccctgttttctgagttagctggacagatagctg #### Capn1_ID1372_4 --> 0 - 2 Original Alignment CTGTGGCAGTTCGGGGAGTGGGTCGACGTGGTCATAGATGACTTGCTGCCCACCAAGGACGGGAAGCTGGTGTTCGTGCACTCTGCCCAGGGCAACGAATTCTGGAGCGCACTGCTGGAGAAAGCCTATGCTaa ggatacctggtgccagtctgtggtagaagtcagctccgttctctccccagCTGTGGGAGTTTGGTGAGTGGGTTGACATTGTCAGAGATACACTACTGCCCACAAAAGATGGGAAACTGATTTTTGTACACCCAGCCCAAGGCAATGACTTTTGGATATCATTGCTGGTAAAGGCCTACACAaagtatgtacaaagcgctttttcagagactgactcttttcccctctctggag Alignment from CESAR CTGTGGCAGTTCGGGGAGTGGGTCGACGTGGTCATAGATGACTTGCTGCCCACCAAGGACGGGAAGCTGGTGTTCGTGCACTCTGCCCAGGGCAACGAATTCTGGAGCGCACTGCTGGAGAAAGCCTATGCTaa ggatacctggtgccagtctgtggtagaagtcagctccgttctctccccagCTGTGGGAGTTTGGTGAGTGGGTTGACATTGTCAGAGATACACTACTGCCCACAAAAGATGGGAAACTGATTTTTGTACACCCAGCCCAAGGCAATGACTTTTGGATATCATTGCTGGTAAAGGCCTACACAaagtatgtacaaagcgctttttcagagactgactcttttcccctctctggag Alignment from Spaln_aa2Genome CTGTGGCAGTTCGGGGAGTGGGTCGACGTGGTCATAGATGACTTGCTGCCCACCAAGGACGGGAAGCTGGTGTTCGTGCACTCTGCCCAGGGCAACGAATTCTGGAGCGCACTGCTGGAGAAAGCCTATGCTAA ggatacctggtgccagtctgtggtagaagtcagctccgttctctccccagCTGTGGGAGTTTGGTGAGTGGGTTGACATTGTCAGAGATACACTACTGCCCACAAAAGATGGGAAACTGATTTTTGTACACCCAGCCCAAGGCAATGACTTTTGGATATCATTGCTGGTAAAGGCCTACACAAAgtatgtacaaagcgctttttcagagactgactcttttcccctctctggag Alignment from Spaln_nt2Genome CTGTGGCAGTTCGGGGAGTGGGTCGACGTGGTCATAGATGACTTGCTGCCCACCAAGGACGGGAAGCTGGTGTTCGTGCACTCTGCCCAGGGCAACGAATTCTGGAGCGCACTGCTGGAGAAAGCCTATGCTAA ggatacctggtgccagtctgtggtagaagtcagctccgttctctccccagCTGTGGGAGTTTGGTGAGTGGGTTGACATTGTCAGAGATACACTACTGCCCACAAAAGATGGGAAACTGATTTTTGTACACCCAGCCCAAGGCAATGACTTTTGGATATCATTGCTGGTAAAGGCCTACACAAAgtatgtacaaagcgctttttcagagactgactcttttcccctctctggag Alignment from Pairagon CTGTGGCAGTTCGGGGAGTGGGTCGACGTGGTCATAGATGACTTGCTGCCCACCAAGGACGGGAAGCTGGTGTTCGTGCACTCTGCCCAGGGCAACGAATTCTGGAGCGCACTGCTGGAGAAAGCCTATGCTAA ggatacctggtgccagtctgtggtagaagtcagctccgttctctccccagCTGTGGGAGTTTGGTGAGTGGGTTGACATTGTCAGAGATACACTACTGCCCACAAAAGATGGGAAACTGATTTTTGTACACCCAGCCCAAGGCAATGACTTTTGGATATCATTGCTGGTAAAGGCCTACACAAAgtatgtacaaagcgctttttcagagactgactcttttcccctctctggag Alignment from Exonerate_protein2genome CTGTGGCAGTTCGGGGAGTGGGTCGACGTGGTCATAGATGACTTGCTGCCCACCAAGGACGGGAAGCTGGTGTTCGTGCACTCTGCCCAGGGCAACGAATTCTGGAGCGCACTGCTGGAGAAAGCCTATGCTAA ggatacctggtgccagtctgtggtagaagtcagctccgttctctccccagCTGTGGGAGTTTGGTGAGTGGGTTGACATTGTCAGAGATACACTACTGCCCACAAAAGATGGGAAACTGATTTTTGTACACCCAGCCCAAGGCAATGACTTTTGGATATCATTGCTGGTAAAGGCCTACACAAAgtatgtacaaagcgctttttcagagactgactcttttcccctctctggag Alignment from Exonerate_coding2genome ggatacctggtgccagtctgtggtagaagtcagctccgttctctccccagctgtgggagtttggtgagtgggttgacattgtcagagatacactactgcccacaaaagatgggaaactgatttttgtacacccagcccaaggcaatgacttttggatatcattgctggtaaaggcctacacaaagtatgtacaaagcgctttttcagagactgactcttttcccctctctggag Alignment from GeneWise CTGTGGCAGTTCGGGGAGTGGGTCGACGTGGTCATAGATGACTTGCTGCCCACCAAGGACGGGAAGCTGGTGTTCGTGCACTCTGCCCAGGGCAACGAATTCTGGAGCGCACTGCTGGAGAAAGCCTATGCTAA ggatacctggtgccagtctgtggtagaagtcagctccgttctctccccagCTGTGGGAGTTTGGTGAGTGGGTTGACATTGTCAGAGATACACTACTGCCCACAAAAGATGGGAAACTGATTTTTGTACACCCAGCCCAAGGCAATGACTTTTGGATATCATTGCTGGTAAAGGCCTACACAAAgtatgtacaaagcgctttttcagagactgactcttttcccctctctggag #### Carns1_ID384_8 --> 2 - 0 Original Alignment gcGTGGACTTAGTTCTCACGGTGATCGGACGCACGCTGACGCCCGTGGTCCTTAAGCTGAACAGTGGCCTGTGCCTAGAGGCCTGCGGCGCGCTCGAGGGGCTGTGGGCCGTGCCACGCCTAAGACGCTCAGCTGAGGAGGCAGCGGCAGCGCCGCTGGTGGAGACTATGCTGCGGCGCTCAGGGCGCCACCTCATGGACGGCAAGCAGCTGCTGGTGATCGGCGCCGGCGGCGTCAGCAAGAAGTTCGTGTGGGAGGCGGCGCGGGACTACGGACTGACG ttgcctctaggtatgtggttcaaggctcaacaattccttttgttcttcagggGTAGATTTAGTTCTTGCAGTGATCGGTCGTACACTAACACCTGTCGTTCTTAAATTAAATTGTGGTTCATGCCTTGAGGCCTGCGGTGCACTTGAAGGGAGATGGGCTGTCCCACACCTACGACGATCAGCAGAGGACGCAGCAGCAGCACCATTGGTTGAGACCATGCTGAGGCATTCAGGGCGCCACTTAATGGATGGCAAGCAGCTGCTGGTTATTGGGACAGAGAGTGTTGGTAAGAAGTTTTTGTGGGAAGTAGCCCGAGATTACAGACTTACTgtaagtgagaaatcagcagaatatggttcaatcccaaagagcaaccctgc Alignment from CESAR gcGTGGACTTAGTTCTCACGGTGATCGGACGCACGCTGACGCCCGTGGTCCTTAAGCTGAACAGTGGCCTGTGCCTAGAGGCCTGCGGCGCGCTCGAGGGGCTGTGGGCCGTGCCACGCCTAAGACGCTCAGCTGAGGAGGCAGCGGCAGCGCCGCTGGTGGAGACTATGCTGCGGCGCTCAGGGCGCCACCTCATGGACGGCAAGCAGCTGCTGGTGATCGGCGCCGGCGGCGTCAGCAAGAAGTTCGTGTGGGAGGCGGCGCGGGACTACGGACTGACG ttgcctctaggtatgtggttcaaggctcaacaattccttttgttcttcagggGTAGATTTAGTTCTTGCAGTGATCGGTCGTACACTAACACCTGTCGTTCTTAAATTAAATTGTGGTTCATGCCTTGAGGCCTGCGGTGCACTTGAAGGGAGATGGGCTGTCCCACACCTACGACGATCAGCAGAGGACGCAGCAGCAGCACCATTGGTTGAGACCATGCTGAGGCATTCAGGGCGCCACTTAATGGATGGCAAGCAGCTGCTGGTTATTGGGACAGAGAGTGTTGGTAAGAAGTTTTTGTGGGAAGTAGCCCGAGATTACAGACTTACTgtaagtgagaaatcagcagaatatggttcaatcccaaagagcaaccctgc Alignment from Spaln_aa2Genome GCGTGGACTTAGTTCTCACGGTGATCGGACGCACGCTGACGCCCGTGGTCCTTAAGCTGAACAGTGGCCTGTGCCTAGAGGCCTGCGGCGCGCTCGAGGGGCTGTGGGCCGTGCCACGCCTAAGACGCTCAGCTGAGGAGGCAGCGGCAGCGCCGCTGGTGGAGACTATGCTGCGGCGCTCAGGGCGCCACCTCATGGACGGCAAGCAGCTGCTGGTGATCGGCGCCGGCGGCGTCAGCAAGAAGTTCGTGTGGGAGGCGGCGCGGGACTACGGACTGACG ttgcctctaggtatgtggttcaaggctcaacaattccttttgttcttcagGGGTAGATTTAGTTCTTGCAGTGATCGGTCGTACACTAACACCTGTCGTTCTTAAATTAAATTGTGGTTCATGCCTTGAGGCCTGCGGTGCACTTGAAGGGAGATGGGCTGTCCCACACCTACGACGATCAGCAGAGGACGCAGCAGCAGCACCATTGGTTGAGACCATGCTGAGGCATTCAGGGCGCCACTTAATGGATGGCAAGCAGCTGCTGGTTATTGGGACAGAGAGTGTTGGTAAGAAGTTTTTGTGGGAAGTAGCCCGAGATTACAGACTTACTgtaagtgagaaatcagcagaatatggttcaatcccaaagagcaaccctgc Alignment from Spaln_nt2Genome GCGTGGACTTAGTTCTCACGGTGATCGGACGCACGCTGACGCCCGTGGTCCTTAAGCTGAACAGTGGCCTGTGCCTAGAGGCCTGCGGCGCGCTCGAGGGGCTGTGGGCCGTGCCACGCCTAAGACGCTCAGCTGAGGAGGCAGCGGCAGCGCCGCTGGTGGAGACTATGCTGCGGCGCTCAGGGCGCCACCTCATGGACGGCAAGCAGCTGCTGGTGATCGGCGCCGGCGGCGTCAGCAAGAAGTTCGTGTGGGAGGCGGCGCGGGACTACGGACTGACG ttgcctctaggtatgtggttcaaggctcaacaattccttttgttcttcagGGGTAGATTTAGTTCTTGCAGTGATCGGTCGTACACTAACACCTGTCGTTCTTAAATTAAATTGTGGTTCATGCCTTGAGGCCTGCGGTGCACTTGAAGGGAGATGGGCTGTCCCACACCTACGACGATCAGCAGAGGACGCAGCAGCAGCACCATTGGTTGAGACCATGCTGAGGCATTCAGGGCGCCACTTAATGGATGGCAAGCAGCTGCTGGTTATTGGGACAGAGAGTGTTGGTAAGAAGTTTTTGTGGGAAGTAGCCCGAGATTACAGACTTACTgtaagtgagaaatcagcagaatatggttcaatcccaaagagcaaccctgc Alignment from Pairagon GCGTGGACTTAGTTCTCACGGTGATCGGACGCACGCTGACGCCCGTGGTCCTTAAGCTGAACAGTGGCCTGTGCCTAGAGGCCTGCGGCGCGCTCGAGGGGCTGTGGGCCGTGCCACGCCTAAGACGCTCAGCTGAGGAGGCAGCGGCAGCGCCGCTGGTGGAGACTATGCTGCGGCGCTCAGGGCGCCACCTCATGGACGGCAAGCAGCTGCTGGTGATCGGCGCCGGCGGCGTCAGCAAGAAGTTCGTGTGGGAGGCGGCGCGGGACTACGGACTGACG ttgcctctaggtatgtggttcaaggctcaacaattccttttgttcttcagGGGTAGATTTAGTTCTTGCAGTGATCGGTCGTACACTAACACCTGTCGTTCTTAAATTAAATTGTGGTTCATGCCTTGAGGCCTGCGGTGCACTTGAAGGGAGATGGGCTGTCCCACACCTACGACGATCAGCAGAGGACGCAGCAGCAGCACCATTGGTTGAGACCATGCTGAGGCATTCAGGGCGCCACTTAATGGATGGCAAGCAGCTGCTGGTTATTGGGACAGAGAGTGTTGGTAAGAAGTTTTTGTGGGAAGTAGCCCGAGATTACAGACTTACTgtaagtgagaaatcagcagaatatggttcaatcccaaagagcaaccctgc Alignment from Exonerate_protein2genome GCGTGGACTTAGTTCTCACGGTGATCGGACGCACGCTGACGCCCGTGGTCCTTAAGCTGAACAGTGGCCTGTGCCTAGAGGCCTGCGGCGCGCTCGAGGGGCTGTGGGCCGTGCCACGCCTAAGACGCTCAGCTGAGGAGGCAGCGGCAGCGCCGCTGGTGGAGACTATGCTGCGGCGCTCAGGGCGCCACCTCATGGACGGCAAGCAGCTGCTGGTGATCGGCGCCGGCGGCGTCAGCAAGAAGTTCGTGTGGGAGGCGGCGCGGGACTACGGACTGACG ttgcctctaggtatgtggttcaaggctcaacaattccttttgttcttcagGGGTAGATTTAGTTCTTGCAGTGATCGGTCGTACACTAACACCTGTCGTTCTTAAATTAAATTGTGGTTCATGCCTTGAGGCCTGCGGTGCACTTGAAGGGAGATGGGCTGTCCCACACCTACGACGATCAGCAGAGGACGCAGCAGCAGCACCATTGGTTGAGACCATGCTGAGGCATTCAGGGCGCCACTTAATGGATGGCAAGCAGCTGCTGGTTATTGGGACAGAGAGTGTTGGTAAGAAGTTTTTGTGGGAAGTAGCCCGAGATTACAGACTTACTgtaagtgagaaatcagcagaatatggttcaatcccaaagagcaaccctgc Alignment from Exonerate_coding2genome GCGTGGACTTAGTTCTCACGGTGATCGGACGCACGCTGACGCCCGTGGTCCTTAAGCTGAACAGTGGCCTGTGCCTAGAGGCCTGCGGCGCGCTCGAGGGGCTGTGGGCCGTGCCACGCCTAAGACGCTCAGCTGAGGAGGCAGCGGCAGCGCCGCTGGTGGAGACTATGCTGCGGCGCTCAGGGCGCCACCTCATGGACGGCAAGCAGCTGCTGGTGATCGGCGCCGGCGGCGTCAGCAAGAAGTTCGTGTGGGAGGCGGCGCGGGACTACGGACTGACG ttgcctctaggtatgtggttcaaggctcaacaattccttttgttcttcagGGGTAGATTTAGTTCTTGCAGTGATCGGTCGTACACTAACACCTGTCGTTCTTAAATTAAATTGTGGTTCATGCCTTGAGGCCTGCGGTGCACTTGAAGGGAGATGGGCTGTCCCACACCTACGACGATCAGCAGAGGACGCAGCAGCAGCACCATTGGTTGAGACCATGCTGAGGCATTCAGGGCGCCACTTAATGGATGGCAAGCAGCTGCTGGTTATTGGGACAGAGAGTGTTGGTAAGAAGTTTTTGTGGGAAGTAGCCCGAGATTACAGACTTACTgtaagtgagaaatcagcagaatatggttcaatcccaaagagcaaccctgc Alignment from GeneWise GCGTGGACTTAGTTCTCACGGTGATCGGACGCACGCTGACGCCCGTGGTCCTTAAGCTGAACAGTGGCCTGTGCCTAGAGGCCTGCGGCGCGCTCGAGGGGCTGTGGGCCGTGCCACGCCTAAGACGCTCAGCTGAGGAGGCAGCGGCAGCGCCGCTGGTGGAGACTATGCTGCGGCGCTCAGGGCGCCACCTCATGGACGGCAAGCAGCTGCTGGTGATCGGCGCCGGCGGCGTCAGCAAGAAGTTCGTGTGGGAGGCGGCGCGGGACTACGGACTGACG ttgcctctaggtatgtggttcaaggctcaacaattccttttgttcttcagGGGTAGATTTAGTTCTTGCAGTGATCGGTCGTACACTAACACCTGTCGTTCTTAAATTAAATTGTGGTTCATGCCTTGAGGCCTGCGGTGCACTTGAAGGGAGATGGGCTGTCCCACACCTACGACGATCAGCAGAGGACGCAGCAGCAGCACCATTGGTTGAGACCATGCTGAGGCATTCAGGGCGCCACTTAATGGATGGCAAGCAGCTGCTGGTTATTGGGACAGAGAGTGTTGGTAAGAAGTTTTTGTGGGAAGTAGCCCGAGATTACAGACTTACTgtaagtgagaaatcagcagaatatggttcaatcccaaagagcaaccctgc #### Carns1_ID390_2 --> 0 - 1 Original Alignment CTCTGCCTGGATCCACTGGGTACGGAGTGGGACTCCAAGGACCTGGATGGAAAGGAAGAACCATGGAAAAGCGGT---GCTGGCCTGCCACCCACAGGCTGCTTCCCTGGGCCCTGGCGCCAGGATATCAGCCTGGATTGCAAGGGCTCCCCGGAAGAGACTGAGGCTCGGGCCTGGACTGTGTACTACTACGGTCTCCTTCAGAGTTGTCTGCAGCAAGCTGGCCTTCCTGAGACCCAGGATCGCAGCCAGGCACCTCGTACAg tcaaacctcccccaccaagactccaccttatcccatgtctctttgcacagCTTTGCTTAGATCCACTTGGTACAGGGTGGGATTCCAAGGGCCTGGATGGAAAAGAAGAGCCGTGGAAAAGTGGTGTTGCAGGTTCACCATCAACTGGGTGCTACCCTGGACCTTGGCGACAAGATATTAGCCTAGATTGCAAAGGATCTCCTGAAGAGGCTGAAACCCAGGCCTGGACTGTG---TATTATGGT---CTCCAGAGTTGTCTGCAGCATGCAAGCCTTCCAGAGACACAGGATCGCAGCCAGGCACCTCATACAggtatgcacatatactacagagtaactctctggtggaaacatggattgagg Alignment from CESAR CTCTGCCTGGATCCACTGGGTACGGAGTGGGACTCCAAGGACCTGGATGGAAAGGAAGAACCATGGAAAAGCGGT---GCTGGCCTGCCACCCACAGGCTGCTTCCCTGGGCCCTGGCGCCAGGATATCAGCCTGGATTGCAAGGGCTCCCCGGAAGAGACTGAGGCTCGGGCCTGGACTGTGTACTACTACGGTCTCCTTCAGAGTTGTCTGCAGCAAGCTGGCCTTCCTGAGACCCAGGATCGCAGCCAGGCACCTCGTACAg tcaaacctcccccaccaagactccaccttatcccatgtctctttgcacagCTTTGCTTAGATCCACTTGGTACAGGGTGGGATTCCAAGGGCCTGGATGGAAAAGAAGAGCCGTGGAAAAGTGGTGTTGCAGGTTCACCATCAACTGGGTGCTACCCTGGACCTTGGCGACAAGATATTAGCCTAGATTGCAAAGGATCTCCTGAAGAGGCTGAAACCCAGGCCTGGACTGTG---TATTATGGTCTC---CAGAGTTGTCTGCAGCATGCAAGCCTTCCAGAGACACAGGATCGCAGCCAGGCACCTCATACAggtatgcacatatactacagagtaactctctggtggaaacatggattgagg Alignment from Spaln_aa2Genome CTCTGCCTGGATCCACTGGGTACGGAGTGGGACTCCAAGGACCTGGATGGAAAGGAAGAACCATGGAAAAGCGGT---GCTGGCCTGCCACCCACAGGCTGCTTCCCTGGGCCCTGGCGCCAGGATATCAGCCTGGATTGCAAGGGCTCCCCGGAAGAGACTGAGGCTCGGGCCTGGACTGTGTACTACTACGGTCTCCTTCAGAGTTGTCTGCAGCAAGCTGGCCTTCCTGAGACCCAGGATCGCAGCCAGGCACCTCGTACAG tcaaacctcccccaccaagactccaccttatcccatgtctctttgcacagCTTTGCTTAGATCCACTTGGTACAGGGTGGGATTCCAAGGGCCTGGATGGAAAAGAAGAGCCGTGGAAAAGTGGTGTTGCAGGTTCACCATCAACTGGGTGCTACCCTGGACCTTGGCGACAAGATATTAGCCTAGATTGCAAAGGATCTCCTGAAGAGGCTGAAACCCAGGCCTGGACTGTGTATTAT------GGTCTCCAGAGTTGTCTGCAGCATGCAAGCCTTCCAGAGACACAGGATCGCAGCCAGGCACCTCATACAGgtatgcacatatactacagagtaactctctggtggaaacatggattgagg Alignment from Spaln_nt2Genome CTCTGCCTGGATCCACTGGGTACGGAGTGGGACTCCAAGGACCTGGATGGAAAGGAAGAACCATGGAAAAGCGGTGCTG---GCCTGCCACCCACAGGCTGCTTCCCTGGGCCCTGGCGCCAGGATATCAGCCTGGATTGCAAGGGCTCCCCGGAAGAGACTGAGGCTCGGGCCTGGACTGTGTACTACTACGGTCTCCTTCAGAGTTGTCTGCAGCAAGCTGGCCTTCCTGAGACCCAGGATCGCAGCCAGGCACCTCGTACAG tcaaacctcccccaccaagactccaccttatcccatgtctctttgcacagCTTTGCTTAGATCCACTTGGTACAGGGTGGGATTCCAAGGGCCTGGATGGAAAAGAAGAGCCGTGGAAAAGTGGTGTTGCAGGTTCACCATCAACTGGGTGCTACCCTGGACCTTGGCGACAAGATATTAGCCTAGATTGCAAAGGATCTCCTGAAGAGGCTGAAACCCAGGCCTGGACTGTG---TATTATGGTCTC---CAGAGTTGTCTGCAGCATGCAAGCCTTCCAGAGACACAGGATCGCAGCCAGGCACCTCATACAGgtatgcacatatactacagagtaactctctggtggaaacatggattgagg Alignment from Pairagon CTCTGCCTGGATCCACTGGGTACGGAGTGGGACTCCAAGGACCTGGATGGAAAGGAAGAACCATGGAAAAGCGGTGCT---GGCCTGCCACCCACAGGCTGCTTCCCTGGGCCCTGGCGCCAGGATATCAGCCTGGATTGCAAGGGCTCCCCGGAAGAGACTGAGGCTCGGGCCTGGACTGTGTACTACTACGGTCTCCTTCAGAGTTGTCTGCAGCAAGCTGGCCTTCCTGAGACCCAGGATCGCAGCCAGGCACCTCGTACAG tcaaacctcccccaccaagactccaccttatcccatgtctctttgcacagCTTTGCTTAGATCCACTTGGTACAGGGTGGGATTCCAAGGGCCTGGATGGAAAAGAAGAGCCGTGGAAAAGTGGTGTTGCAGGTTCACCATCAACTGGGTGCTACCCTGGACCTTGGCGACAAGATATTAGCCTAGATTGCAAAGGATCTCCTGAAGAGGCTGAAACCCAGGCCTGGACTGTG---TATTATGGTCTC---CAGAGTTGTCTGCAGCATGCAAGCCTTCCAGAGACACAGGATCGCAGCCAGGCACCTCATACAGgtatgcacatatactacagagtaactctctggtggaaacatggattgagg Alignment from Exonerate_protein2genome ATGCTCTGCCTGGATCCACTGGGTACGGAGTGGGACTCCAAGGACCTGGATGGAAAGGAAGAACCATGGAAAAGCGGT---GCTGGCCTGCCACCCACAGGCTGCTTCCCTGGGCCCTGGCGCCAGGATATCAGCCTGGATTGCAAGGGCTCCCCGGAAGAGACTGAGGCTCGGGCCTGGACTGTGTACTACTACGGTCTCCTTCAGAGTTGTCTGCAGCAAGCTGGCCTTCCTGAGACCCAGGATCGCAGCCAGGCACCTCGTACAG tcaaacctcccccaccaagactccaccttatcccatgtctctttgcaCAGCTTTGCTTAGATCCACTTGGTACAGGGTGGGATTCCAAGGGCCTGGATGGAAAAGAAGAGCCGTGGAAAAGTGGTGTTGCAGGTTCACCATCAACTGGGTGCTACCCTGGACCTTGGCGACAAGATATTAGCCTAGATTGCAAAGGATCTCCTGAAGAGGCTGAAACCCAGGCCTGGACTGTGTATTATGGT------CTCCAGAGTTGTCTGCAGCATGCAAGCCTTCCAGAGACACAGGATCGCAGCCAGGCACCTCATACAGgtatgcacatatactacagagtaactctctggtggaaacatggattgagg Alignment from Exonerate_coding2genome ATGCTCTGCCTGGATCCACTGGGTACGGAGTGGGACTCCAAGGACCTGGATGGAAAGGAAGAACCATGGAAAAGCGGT---GCTGGCCTGCCACCCACAGGCTGCTTCCCTGGGCCCTGGCGCCAGGATATCAGCCTGGATTGCAAGGGCTCCCCGGAAGAGACTGAGGCTCGGGCCTGGACTGTGTACTACTACGGTCTCCTTCAGAGTTGTCTGCAGCAAGCTGGCCTTCCTGAGACCCAGGATCGCAGCCAGGCACCTCGTACAG tcaaacctcccccaccaagactccaccttatcccatgtctctttgcaCAGCTTTGCTTAGATCCACTTGGTACAGGGTGGGATTCCAAGGGCCTGGATGGAAAAGAAGAGCCGTGGAAAAGTGGTGTTGCAGGTTCACCATCAACTGGGTGCTACCCTGGACCTTGGCGACAAGATATTAGCCTAGATTGCAAAGGATCTCCTGAAGAGGCTGAAACCCAGGCCTGGACTGTGTATTATGGT------CTCCAGAGTTGTCTGCAGCATGCAAGCCTTCCAGAGACACAGGATCGCAGCCAGGCACCTCATACAGgtatgcacatatactacagagtaactctctggtggaaacatggattgagg Alignment from GeneWise ATGCTCTGCCTGGATCCACTGGGTACGGAGTGGGACTCCAAGGACCTGGATGGAAAGGAAGAACCATGGAAAAGCGGT---GCTGGCCTGCCACCCACAGGCTGCTTCCCTGGGCCCTGGCGCCAGGATATCAGCCTGGATTGCAAGGGCTCCCCGGAAGAGACTGAGGCTCGGGCCTGGACTGTGTACTACTACGGTCTCCTTCAGAGTTGTCTGCAGCAAGCTGGCCTTCCTGAGACCCAGGATCGCAGCCAGGCACCTCGTACAG tcaaacctcccccaccaagactccaccttatcccatgtctctttgcaCAGCTTTGCTTAGATCCACTTGGTACAGGGTGGGATTCCAAGGGCCTGGATGGAAAAGAAGAGCCGTGGAAAAGTGGTGTTGCAGGTTCACCATCAACTGGGTGCTACCCTGGACCTTGGCGACAAGATATTAGCCTAGATTGCAAAGGATCTCCTGAAGAGGCTGAAACCCAGGCCTGGACTGTGTATTATGGT------CTCCAGAGTTGTCTGCAGCATGCAAGCCTTCCAGAGACACAGGATCGCAGCCAGGCACCTCATACAGgtatgcacatatactacagagtaactctctggtggaaacatggattgagg #### Casp7_ID12087_2 --> 1 - 1 Original Alignment gAAGAAGAAGAGAAATGCCTCTGCGGGCCCCGTCAGGACCGGCCGGGACCGAGTGCCCACTTATCTGTACCGCATGGATTTCCAGAAGATGGGTAAATGCATCATCATAAACAACAAGAACTTCGACAAAGCGACAg ttgatttgttacccgttcattgtcaaagtctctcaacttgacttttgaaggAAGAAGAAAAGGAGTGCCAGTCCAGGTCCTGTCAGAACCAGCTGGGAACGTGTACCCACATATCTGTATCATATGGATTTCCAGAAGATGGGTAAATGCATCATAATAAATAATAAGAATTTTGACAAAGCAACTggtaaagaaacaactgtgtcaatgtcctttctgaggtgttaacatcgtatg Alignment from CESAR gAAGAAGAAGAGAAATGCCTCTGCGGGCCCCGTCAGGACCGGCCGGGACCGAGTGCCCACTTATCTGTACCGCATGGATTTCCAGAAGATGGGTAAATGCATCATCATAAACAACAAGAACTTCGACAAAGCGACAg ttgatttgttacccgttcattgtcaaagtctctcaacttgacttttgaaggAAGAAGAAAAGGAGTGCCAGTCCAGGTCCTGTCAGAACCAGCTGGGAACGTGTACCCACATATCTGTATCATATGGATTTCCAGAAGATGGGTAAATGCATCATAATAAATAATAAGAATTTTGACAAAGCAACTggtaaagaaacaactgtgtcaatgtcctttctgaggtgttaacatcgtatg Alignment from Spaln_aa2Genome GAAGAAGAAGAGAAATGCCTCTGCGGGCCCCGTCAGGACCGGCCGGGACCGAGTGCCCACTTATCTGTACCGCATGGATTTCCAGAAGATGGGTAAATGCATCATCATAAACAACAAGAACTTCGACAAAGCGACAG ttgatttgttacccgttcattgtcaaagtctctcaacttgacttttgaagGAAGAAGAAAAGGAGTGCCAGTCCAGGTCCTGTCAGAACCAGCTGGGAACGTGTACCCACATATCTGTATCATATGGATTTCCAGAAGATGGGTAAATGCATCATAATAAATAATAAGAATTTTGACAAAGCAACTGgtaaagaaacaactgtgtcaatgtcctttctgaggtgttaacatcgtatg Alignment from Spaln_nt2Genome GAAGAAGAAGAGAAATGCCTCTGCGGGCCCCGTCAGGACCGGCCGGGACCGAGTGCCCACTTATCTGTACCGCATGGATTTCCAGAAGATGGGTAAATGCATCATCATAAACAACAAGAACTTCGACAAAGCGACAG ttgatttgttacccgttcattgtcaaagtctctcaacttgacttttgaagGAAGAAGAAAAGGAGTGCCAGTCCAGGTCCTGTCAGAACCAGCTGGGAACGTGTACCCACATATCTGTATCATATGGATTTCCAGAAGATGGGTAAATGCATCATAATAAATAATAAGAATTTTGACAAAGCAACTGgtaaagaaacaactgtgtcaatgtcctttctgaggtgttaacatcgtatg Alignment from Pairagon GAAGAAGAAGAGAAATGCCTCTGCGGGCCCCGTCAGGACCGGCCGGGACCGAGTGCCCACTTATCTGTACCGCATGGATTTCCAGAAGATGGGTAAATGCATCATCATAAACAACAAGAACTTCGACAAAGCGACAG ttgatttgttacccgttcattgtcaaagtctctcaacttgacttttgaagGAAGAAGAAAAGGAGTGCCAGTCCAGGTCCTGTCAGAACCAGCTGGGAACGTGTACCCACATATCTGTATCATATGGATTTCCAGAAGATGGGTAAATGCATCATAATAAATAATAAGAATTTTGACAAAGCAACTGgtaaagaaacaactgtgtcaatgtcctttctgaggtgttaacatcgtatg Alignment from Exonerate_protein2genome GAAGAAGAAGAGAAATGCCTCTGCGGGCCCCGTCAGGACCGGCCGGGACCGAGTGCCCACTTATCTGTACCGCATGGATTTCCAGAAGATGGGTAAATGCATCATCATAAACAACAAGAACTTCGACAAAGCGACAG ttgatttgttacccgttcattgtcaaagtctctcaacttgacttttgaagGAAGAAGAAAAGGAGTGCCAGTCCAGGTCCTGTCAGAACCAGCTGGGAACGTGTACCCACATATCTGTATCATATGGATTTCCAGAAGATGGGTAAATGCATCATAATAAATAATAAGAATTTTGACAAAGCAACTGgtaaagaaacaactgtgtcaatgtcctttctgaggtgttaacatcgtatg Alignment from Exonerate_coding2genome GAAGAAGAAGAGAAATGCCTCTGCGGGCCCCGTCAGGACCGGCCGGGACCGAGTGCCCACTTATCTGTACCGCATGGATTTCCAGAAGATGGGTAAATGCATCATCATAAACAACAAGAACTTCGACAAAGCGACAG ttgatttgttacccgttcattgtcaaagtctctcaacttgacttttgaagGAAGAAGAAAAGGAGTGCCAGTCCAGGTCCTGTCAGAACCAGCTGGGAACGTGTACCCACATATCTGTATCATATGGATTTCCAGAAGATGGGTAAATGCATCATAATAAATAATAAGAATTTTGACAAAGCAACTGgtaaagaaacaactgtgtcaatgtcctttctgaggtgttaacatcgtatg Alignment from GeneWise GAAGAAGAAGAGAAATGCCTCTGCGGGCCCCGTCAGGACCGGCCGGGACCGAGTGCCCACTTATCTGTACCGCATGGATTTCCAGAAGATGGGTAAATGCATCATCATAAACAACAAGAACTTCGACAAAGCGACAG ttgatttgttacccgttcattgtcaaagtctctcaacttgacttttgaagGAAGAAGAAAAGGAGTGCCAGTCCAGGTCCTGTCAGAACCAGCTGGGAACGTGTACCCACATATCTGTATCATATGGATTTCCAGAAGATGGGTAAATGCATCATAATAAATAATAAGAATTTTGACAAAGCAACTGgtaaagaaacaactgtgtcaatgtcctttctgaggtgttaacatcgtatg #### Casp7_ID12089_4 --> 2 - 0 Original Alignment ccTCTGAGGAGGACCACAGCAACTCGGCCTGCTTCGCCTGCGTCCTGCTGAGCCACGGGGAAGAGGACCTGATTTACGGGAAAGATGGCGTGACACCCATAAAGGATCTGACAGCTCATTTTAGGGGAGACCGATGCAAAACCCTGTTAGAGAAACCCAAACTCTTCTTCATTCAG aagttgtatcataatatgtcagtggtatcaccattttctgattttttaagccTTTACAGAGGATCATAGTAACTCCGCCTGCTTTGCCTGTGTTTTACTGAGCCATGGCGAAGAGGATCTTATTTATGGGAAAGATGGTGCAACTCCCATAAAGGACCTATCTGCTCATTTTAGAGGTGACCGATGTAAAATCCTATTAGAAAAGCCCAAACTCTTTTTTATTCACgtggagttggggatccatgaagttgcggatggtgaaggatgctgcagtgt Alignment from CESAR ccTCTGAGGAGGACCACAGCAACTCGGCCTGCTTCGCCTGCGTCCTGCTGAGCCACGGGGAAGAGGACCTGATTTACGGGAAAGATGGCGTGACACCCATAAAGGATCTGACAGCTCATTTTAGGGGAGACCGATGCAAAACCCTGTTAGAGAAACCCAAACTCTTCTTCATTCAG aagttgtatcataatatgtcagtggtatcaccattttctgattttttaagccTTTACAGAGGATCATAGTAACTCCGCCTGCTTTGCCTGTGTTTTACTGAGCCATGGCGAAGAGGATCTTATTTATGGGAAAGATGGTGCAACTCCCATAAAGGACCTATCTGCTCATTTTAGAGGTGACCGATGTAAAATCCTATTAGAAAAGCCCAAACTCTTTTTTATTCACgtggagttggggatccatgaagttgcggatggtgaaggatgctgcagtgt Alignment from Spaln_aa2Genome CCTCTGAGGAGGACCACAGCAACTCGGCCTGCTTCGCCTGCGTCCTGCTGAGCCACGGGGAAGAGGACCTGATTTACGGGAAAGATGGCGTGACACCCATAAAGGATCTGACAGCTCATTTTAGGGGAGACCGATGCAAAACCCTGTTAGAGAAACCCAAACTCTTCTTCATTCAG aagttgtatcataatatgtcagtggtatcaccattttctgattttttaagCCTTTACAGAGGATCATAGTAACTCCGCCTGCTTTGCCTGTGTTTTACTGAGCCATGGCGAAGAGGATCTTATTTATGGGAAAGATGGTGCAACTCCCATAAAGGACCTATCTGCTCATTTTAGAGGTGACCGATGTAAAATCCTATTAGAAAAGCCCAAACTCTTTTTTATTCACgtggagttggggatccatgaagttgcggatggtgaaggatgctgcagtgt Alignment from Spaln_nt2Genome CCTCTGAGGAGGACCACAGCAACTCGGCCTGCTTCGCCTGCGTCCTGCTGAGCCACGGGGAAGAGGACCTGATTTACGGGAAAGATGGCGTGACACCCATAAAGGATCTGACAGCTCATTTTAGGGGAGACCGATGCAAAACCCTGTTAGAGAAACCCAAACTCTTCTTCATTCAG aagttgtatcataatatgtcagtggtatcaccattttctgattttttaagCCTTTACAGAGGATCATAGTAACTCCGCCTGCTTTGCCTGTGTTTTACTGAGCCATGGCGAAGAGGATCTTATTTATGGGAAAGATGGTGCAACTCCCATAAAGGACCTATCTGCTCATTTTAGAGGTGACCGATGTAAAATCCTATTAGAAAAGCCCAAACTCTTTTTTATTCACgtggagttggggatccatgaagttgcggatggtgaaggatgctgcagtgt Alignment from Pairagon AGATCTGCTTAGAAAAGCCTCTGAGGAGGACCACAGCAACTCGGCCTGCTTCGCCTGCGTCCTGCTGAGCCACGGGGAAGAGGACCTGATTTACGGGAAAGATGGCGTGACACCCATAAAGGATCTGACAGCTCATTTTAGGGGAGACCGATGCAAAACCCTGTTAGAGAAACCCAAACTCTTCTTCATTCAG aagttgtatcataatatgtcagtggtatcaccattttctgattttttaagcctttacag--------------------------AGGATCATAGTAACTCCGCCTGCTTTGCCTGTGTTTTACTGAGCCATGGCGAAGAGGATCTTATTTATGGGAAAGATGGTGCAACTCCCATAAAGGACCTATCTGCTCATTTTAGAGGTGACCGATGTAAAATCCTATTAGAAAAGCCCAAACTCTTTTTTATTCACgtggagttggggatccatgaagttgcggatggtgaaggatgctgcagtgt Alignment from Exonerate_protein2genome CCTCTGAGGAGGACCACAGCAACTCGGCCTGCTTCGCCTGCGTCCTGCTGAGCCACGGGGAAGAGGACCTGATTTACGGGAAAGATGGCGTGACACCCATAAAGGATCTGACAGCTCATTTTAGGGGAGACCGATGCAAAACCCTGTTAGAGAAACCCAAACTCTTCTTCATTCAG aagttgtatcataatatgtcagtggtatcaccattttctgattttttaagCCTTTACAGAGGATCATAGTAACTCCGCCTGCTTTGCCTGTGTTTTACTGAGCCATGGCGAAGAGGATCTTATTTATGGGAAAGATGGTGCAACTCCCATAAAGGACCTATCTGCTCATTTTAGAGGTGACCGATGTAAAATCCTATTAGAAAAGCCCAAACTCTTTTTTATTCACgtggagttggggatccatgaagttgcggatggtgaaggatgctgcagtgt Alignment from Exonerate_coding2genome CCTCTGAGGAGGACCACAGCAACTCGGCCTGCTTCGCCTGCGTCCTGCTGAGCCACGGGGAAGAGGACCTGATTTACGGGAAAGATGGCGTGACACCCATAAAGGATCTGACAGCTCATTTTAGGGGAGACCGATGCAAAACCCTGTTAGAGAAACCCAAACTCTTCTTCATT aagttgtatcataatatgtcagtggtatcaccattttctgattttttaagCCTTTACAGAGGATCATAGTAACTCCGCCTGCTTTGCCTGTGTTTTACTGAGCCATGGCGAAGAGGATCTTATTTATGGGAAAGATGGTGCAACTCCCATAAAGGACCTATCTGCTCATTTTAGAGGTGACCGATGTAAAATCCTATTAGAAAAGCCCAAACTCTTTTTTATTcacgtggagttggggatccatgaagttgcggatggtgaaggatgctgcagtgt Alignment from GeneWise CCTCTGAGGAGGACCACAGCAACTCGGCCTGCTTCGCCTGCGTCCTGCTGAGCCACGGGGAAGAGGACCTGATTTACGGGAAAGATGGCGTGACACCCATAAAGGATCTGACAGCTCATTTTAGGGGAGACCGATGCAAAACCCTGTTAGAGAAACCCAAACTCTTCTTCATTCAG aagttgtatcataatatgtcagtggtatcaccattttctgattttttaagCCTTTACAGAGGATCATAGTAACTCCGCCTGCTTTGCCTGTGTTTTACTGAGCCATGGCGAAGAGGATCTTATTTATGGGAAAGATGGTGCAACTCCCATAAAGGACCTATCTGCTCATTTTAGAGGTGACCGATGTAAAATCCTATTAGAAAAGCCCAAACTCTTTTTTATTCACgtggagttggggatccatgaagttgcggatggtgaaggatgctgcagtgt #### Casp7_ID12090_5 --> 0 - 1 Original Alignment GCATGCCGAGGGACGGAGCTCGATGATGGAATCCAGGCTGACTCGGGGCCCATCAACGACATTGACGCTAATCCCCGCAACAAGATCCCGGTGGAAGCCGACTTCCTCTTTGCTTACTCCACGGTTCCAg caagtatgcttcagactacccagttctatgcccacttctcttcactacagGCATGTCGAGGGACAGAGCTTGATGATGGTATAGAGGCCGATTCAGGACCCATTAATGACATCGACACTAATCCCCGGAACAAGATCTCAGTAGATGCTGACTGTCTCTTTGCTTATTCCACAGTCCCAggtaggtcaccaactcttggcaacccacagactgcttcatagaaagtcatg Alignment from CESAR GCATGCCGAGGGACGGAGCTCGATGATGGAATCCAGGCTGACTCGGGGCCCATCAACGACATTGACGCTAATCCCCGCAACAAGATCCCGGTGGAAGCCGACTTCCTCTTTGCTTACTCCACGGTTCCAg caagtatgcttcagactacccagttctatgcccacttctcttcactacagGCATGTCGAGGGACAGAGCTTGATGATGGTATAGAGGCCGATTCAGGACCCATTAATGACATCGACACTAATCCCCGGAACAAGATCTCAGTAGATGCTGACTGTCTCTTTGCTTATTCCACAGTCCCAggtaggtcaccaactcttggcaacccacagactgcttcatagaaagtcatg Alignment from Spaln_aa2Genome GCATGCCGAGGGACGGAGCTCGATGATGGAATCCAGGCTGACTCGGGGCCCATCAACGACATTGACGCTAATCCCCGCAACAAGATCCCGGTGGAAGCCGACTTCCTCTTTGCTTACTCCACGGTTCCAG caagtatgcttcagactacccagttctatgcccacttctcttcactacagGCATGTCGAGGGACAGAGCTTGATGATGGTATAGAGGCCGATTCAGGACCCATTAATGACATCGACACTAATCCCCGGAACAAGATCTCAGTAGATGCTGACTGTCTCTTTGCTTATTCCACAGTCCCAGgtaggtcaccaactcttggcaacccacagactgcttcatagaaagtcatg Alignment from Spaln_nt2Genome GCATGCCGAGGGACGGAGCTCGATGATGGAATCCAGGCTGACTCGGGGCCCATCAACGACATTGACGCTAATCCCCGCAACAAGATCCCGGTGGAAGCCGACTTCCTCTTTGCTTACTCCACGGTTCCAG caagtatgcttcagactacccagttctatgcccacttctcttcactacagGCATGTCGAGGGACAGAGCTTGATGATGGTATAGAGGCCGATTCAGGACCCATTAATGACATCGACACTAATCCCCGGAACAAGATCTCAGTAGATGCTGACTGTCTCTTTGCTTATTCCACAGTCCCAGgtaggtcaccaactcttggcaacccacagactgcttcatagaaagtcatg Alignment from Pairagon GCATGCCGAGGGACGGAGCTCGATGATGGAATCCAGGCTGACTCGGGGCCCATCAACGACATTGACGCTAATCCCCGCAACAAGATCCCGGTGGAAGCCGACTTCCTCTTTGCTTACTCCACGGTTCCAG caagtatgcttcagactacccagttctatgcccacttctcttcactacagGCATGTCGAGGGACAGAGCTTGATGATGGTATAGAGGCCGATTCAGGACCCATTAATGACATCGACACTAATCCCCGGAACAAGATCTCAGTAGATGCTGACTGTCTCTTTGCTTATTCCACAGTCCCAGgtaggtcaccaactcttggcaacccacagactgcttcatagaaagtcatg Alignment from Exonerate_protein2genome GCATGCCGAGGGACGGAGCTCGATGATGGAATCCAGGCTGACTCGGGGCCCATCAACGACATTGACGCTAATCCCCGCAACAAGATCCCGGTGGAAGCCGACTTCCTCTTTGCTTACTCCACGGTTCCAG caagtatgcttcagactacccagttctatgcccacttctcttcactacagGCATGTCGAGGGACAGAGCTTGATGATGGTATAGAGGCCGATTCAGGACCCATTAATGACATCGACACTAATCCCCGGAACAAGATCTCAGTAGATGCTGACTGTCTCTTTGCTTATTCCACAGTCCCAGgtaggtcaccaactcttggcaacccacagactgcttcatagaaagtcatg Alignment from Exonerate_coding2genome caagtatgcttcagactacccagttctatgcccacttctcttcactacaggcatgtcgagggacagagcttgatgatggtatagaggccgattcaggacccattaatgacatcgacactaatccccggaacaagatctcagtagatgctgactgtctctttgcttattccacagtcccaggtaggtcaccaactcttggcaacccacagactgcttcatagaaagtcatg Alignment from GeneWise GCATGCCGAGGGACGGAGCTCGATGATGGAATCCAGGCTGACTCGGGGCCCATCAACGACATTGACGCTAATCCCCGCAACAAGATCCCGGTGGAAGCCGACTTCCTCTTTGCTTACTCCACGGTTCCAG caagtatgcttcagactacccagttctatgcccacttctcttcactacagGCATGTCGAGGGACAGAGCTTGATGATGGTATAGAGGCCGATTCAGGACCCATTAATGACATCGACACTAATCCCCGGAACAAGATCTCAGTAGATGCTGACTGTCTCTTTGCTTATTCCACAGTCCCAGgtaggtcaccaactcttggcaacccacagactgcttcatagaaagtcatg #### Catsper1_ID930_7 --> 2 - 2 Original Alignment CCCAAg gcGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCaa CCCAGggtattctagcctaagtctccaggccaatgtctcttgcttttcagctGCCTGGTACATCATCCCAATCCTCATGATCTATATTGTTATCCAATACTTTACATTCCTCaagtatatcattgaactcttccaatcagcacccgccaagcactaacaatcct Alignment from CESAR CCCAAg gcGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCaa CCCAGggtgagatagcctaagtctccaggccaatgtctcttgcttttcagctGCCTGGTACATCATCCCAATCCTCATGATCTATATTGTTATCCAATACTTTACATTCCTCaagtatatcattgaactcttccaatcagcacccgccaagcactaacaatcct Alignment from Spaln_aa2Genome CCCAAG GCGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA CCCAGGgtattctagcctaagtctccaggccaatgtctcttgcttttcagCTGCCTGGTACATCATCCCAATCCTCATGATCTATATTGTTATCCAATACTTTACATTCCTCAAgtatatcattgaactcttccaatcagcacccgccaagcactaacaatcct Alignment from Spaln_nt2Genome CCCAAG GCGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA CCCAGGgtattctagcctaagtctccaggccaatgtctcttgcttttcagCTGCCTGGTACATCATCCCAATCCTCATGATCTATATTGTTATCCAATACTTTACATTCCTCAAgtatatcattgaactcttccaatcagcacccgccaagcactaacaatcct Alignment from Pairagon CCCAAGG--------------------------------------------CGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA CCCAGGGTATTCTAGCCTAAGTCTCCAGGCCAATGTCTCTTGCTTTTCAGCTGCCTGGTACATCATCCCAATCCTCATGATCTATATTGTTATCCAATACTTTACATTCCTCAAgtatatcattgaactcttccaatcagcacccgccaagcactaacaatcct Alignment from Exonerate_protein2genome CCCAAG GCGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA CCCAGGgtattctagcctaagtctccaggccaatgtctcttgcttttcagCTGCCTGGTACATCATCCCAATCCTCATGATCTATATTGTTATCCAATACTTTACATTCCTCAAgtatatcattgaactcttccaatcagcacccgccaagcactaacaatcct Alignment from Exonerate_coding2genome CCCAAG GCGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA CCCAGGgtattctagcctaagtctccaggccaatgtctcttgcttttcagCTGCCTGGTACATCATCCCAATCCTCATGATCTATATTGTTATCCAATACTTTACATTCCTCAAgtatatcattgaactcttccaatcagcacccgccaagcactaacaatcct Alignment from GeneWise CCCAAG GCGCCTGGTACATCATACCGATCCTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA CCCAGGgtattctagcctaagtctccaggccaatgtctcttgcttttcagCTGCCTGGTACATCATCCCAATCCTCATGATCTATATTGTTATCCAATACTTTACATTCCTCAAgtatatcattgaactcttccaatcagcacccgccaagcactaacaatcct #### Catsper1_ID932_9 --> 0 - 1 Original Alignment CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAg ctgcatttaggaattgaatcctagagtttgtatatgtgatttaaacttagCAAGCTCCCCGGGTCCATGAAAAGTTGTTGGGTGACTCACTTACAGAGCTCAATAAGGCAggtgagtattgaacctcaacttaatctgcaattgaattaatccttaaagga Alignment from CESAR CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAg ctgcatttaggaattgaatcctagagtttgtatatgtgatttaaacttagCAAGCTCCCCGGGTCCATGAAAAGTTGTTGGGTGACTCACTTACAGAGCTCAATAAGGCAggtgagtattgaacctcaacttaatctgcaattgaattaatccttaaagga Alignment from Spaln_aa2Genome CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAG ctgcatttaggaattgaatcctagagtttgtatatgtgatttaaacttagCAAGCTCCCCGGGTCCATGAAAAGTTGTTGGGTGACTCACTTACAGAGCTCAATAAGGCAGgtgagtattgaacctcaacttaatctgcaattgaattaatccttaaagga Alignment from Spaln_nt2Genome CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAG ctgcatttaggaattgaatcctagagtttgtatatgtgatttaaacttagCAAGCTCCCCGGGTCCATGAAAAGTTGTTGGGTGACTCACTTACAGAGCTCAATAAGGCAGgtgagtattgaacctcaacttaatctgcaattgaattaatccttaaagga Alignment from Pairagon CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAG ctgcatttaggaattgaatcctagagtttgtatatgtgatttaaacttagCAAGCTCCCCGGGTCCATGAAAAGTTGTTGGGTGACTCACTTACAGAGCTCAATAAGGCAGgtgagtattgaacctcaacttaatctgcaattgaattaatccttaaagga Alignment from Exonerate_protein2genome CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAG ctgcatttaggaattgaatcctagagtttgtatatgtgatttaaacttagCAAGCTCCCCGGGTCCATGAAAAGTTGTTGGGTGACTCACTTACAGAGCTCAATAAGGCAGgtgagtattgaacctcaacttaatctgcaattgaattaatccttaaagga Alignment from Exonerate_coding2genome CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAG ctgcatttaggaattgaatcctagagtttgtatatgtgatttaaacttagCAAGCTCCCCGGGTCCATGAAAAGTTGTTGGGTGACTCACTTACAGAGCTCAATAAGGCAGgtgagtattgaacctcaacttaatctgcaattgaattaatccttaaagga Alignment from GeneWise CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAG ctgcatttaggaattgaatcctagagtttgtatatgtgatttaaacttagCAAGCTCCCCGGGTCCATGAAAAGTTGTTGGGTGACTCACTTACAGAGCTCAATAAGGCAGgtgagtattgaacctcaacttaatctgcaattgaattaatccttaaagga #### Catsper1_ID934_11 --> 1 - 0 Original Alignment gCAGCGGGTGCTCCACTTCCAGTTCCTGCAGTTGGTGGCAGCGGTAGAACAGCATCAACAGAAGTTTCGTTCCCAAGCGTACGTCATCGATGAGCTTGTGGACATGGCATTTGAG GCTG catgcataccctgataatagaaacttaaggggggggccctttcattgcagaCAGCGGGTTCTACATTTCCAATTCCTACAGTTGGTTGCAGCAGTAGAACAGCATCAAGAGAAGTTCCGATCTCAAGCATATGTTATTGATGAGCTTGTTGATATGGCATTTGAGgtatgcctgtagtagtccatgggttgattgtctgttgtctccctagGCTG Alignment from CESAR gCAGCGGGTGCTCCACTTCCAGTTCCTGCAGTTGGTGGCAGCGGTAGAACAGCATCAACAGAAGTTTCGTTCCCAAGCGTACGTCATCGATGAGCTTGTGGACATGGCATTTGAG GCTG catgcataccctgataatagaaacttaaggggggggccctttcattgcagaCAGCGGGTTCTACATTTCCAATTCCTACAGTTGGTTGCAGCAGTAGAACAGCATCAAGAGAAGTTCCGATCTCAAGCATATGTTATTGATGAGCTTGTTGATATGGCATTTGAGgtatgcctgtagtagtccatgggttttctccatggtcttgtgacagGCTG Alignment from Spaln_aa2Genome GCAGCGGGTGCTCCACTTCCAGTTCCTGCAGTTGGTGGCAGCGGTAGAACAGCATCAACAGAAGTTTCGTTCCCAAGCGTACGTCATCGATGAGCTTGTGGACATGGCATTTGAG GCTG catgcataccctgataatagaaacttaaggggggggccctttcattgcagACAGCGGGTTCTACATTTCCAATTCCTACAGTTGGTTGCAGCAGTAGAACAGCATCAAGAGAAGTTCCGATCTCAAGCATATGTTATTGATGAGCTTGTTGATATGGCATTTGAGgtatgcctgtagtagtccatgggttgattgtctgttgtctccctagGCTG Alignment from Spaln_nt2Genome GCAGCGGGTGCTCCACTTCCAGTTCCTGCAGTTGGTGGCAGCGGTAGAACAGCATCAACAGAAGTTTCGTTCCCAAGCGTACGTCATCGATGAGCTTGTGGACATGGCATTTGAG GCTG catgcataccctgataatagaaacttaaggggggggccctttcattgcagACAGCGGGTTCTACATTTCCAATTCCTACAGTTGGTTGCAGCAGTAGAACAGCATCAAGAGAAGTTCCGATCTCAAGCATATGTTATTGATGAGCTTGTTGATATGGCATTTGAGgtatgcctgtagtagtccatgggttgattgtctgttgtctccctagGCTG Alignment from Pairagon GCAGCGGGTGCTCCACTTCCAGTTCCTGCAGTTGGTGGCAGCGGTAGAACAGCATCAACAGAAGTTTCGTTCCCAAGCGTACGTCATCGATGAGCTTGTGGACATGGCATTTGAG GCTG catgcataccctgataatagaaacttaaggggggggccctttcattgcagACAGCGGGTTCTACATTTCCAATTCCTACAGTTGGTTGCAGCAGTAGAACAGCATCAAGAGAAGTTCCGATCTCAAGCATATGTTATTGATGAGCTTGTTGATATGGCATTTGAGgtatgcctgtagtagtccatgggttgattgtctgttgtctccctagGCTG Alignment from Exonerate_protein2genome GCAGCGGGTGCTCCACTTCCAGTTCCTGCAGTTGGTGGCAGCGGTAGAACAGCATCAACAGAAGTTTCGTTCCCAAGCGTACGTCATCGATGAGCTTGTGGACATGGCATTTGAG GCTG catgcataccctgataatagaaacttaaggggggggccctttcattgcagACAGCGGGTTCTACATTTCCAATTCCTACAGTTGGTTGCAGCAGTAGAACAGCATCAAGAGAAGTTCCGATCTCAAGCATATGTTATTGATGAGCTTGTTGATATGGCATTTGAGgtatgcctgtagtagtccatgggttgattgtctgttgtctccctagGCTG Alignment from Exonerate_coding2genome GCAGCGGGTGCTCCACTTCCAGTTCCTGCAGTTGGTGGCAGCGGTAGAACAGCATCAACAGAAGTTTCGTTCCCAAGCGTACGTCATCGATGAGCTTGTGGACATGGCATTTGAG catgcataccctgataatagaaacttaaggggggggccctttcattgcagACAGCGGGTTCTACATTTCCAATTCCTACAGTTGGTTGCAGCAGTAGAACAGCATCAAGAGAAGTTCCGATCTCAAGCATATGTTATTGATGAGCTTGTTGATATGGCATTTGAGgtatgcctgtagtagtccatgggttgattgtctgttgtctccctaggctg Alignment from GeneWise GCAGCGGGTGCTCCACTTCCAGTTCCTGCAGTTGGTGGCAGCGGTAGAACAGCATCAACAGAAGTTTCGTTCCCAAGCGTACGTCATCGATGAGCTTGTGGACATGGCATTTGAG catgcataccctgataatagaaacttaaggggggggccctttcattgcagACAGCGGGTTCTACATTTCCAATTCCTACAGTTGGTTGCAGCAGTAGAACAGCATCAAGAGAAGTTCCGATCTCAAGCATATGTTATTGATGAGCTTGTTGATATGGCATTTGAGgtatgcctgtagtagtccatgggttgattgtctgttgtctccctaggctg #### Cbwd1_ID5355_12 --> 0 - 0 Original Alignment AGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAG caggtgttccagaatttcagagtatcattgggtgttcctttcctgcacagAGTATCATTACAGTCACATTTGAAGTACCAGGGAGTGCAAAGGAAGAATGTTTAAATGTATTTGTCCAGgtaagagcatgcttctacttatttatgctaattggatggaccctgcaatt Alignment from CESAR AGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAG caggtgttccagaatttcagagtatcattgggtgttcctttcctgcacagAGTATCATTACAGTCACATTTGAAGTACCAGGGAGTGCAAAGGAAGAATGTTTAAATGTATTTGTCCAGgtaagagcatgcttctacttatttatgctaattggatggaccctgcaatt Alignment from Spaln_aa2Genome AGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAG caggtgttccagaatttcagagtatcattgggtgttcctttcctgcacagAGTATCATTACAGTCACATTTGAAGTACCAGGGAGTGCAAAGGAAGAATGTTTAAATGTATTTGTCCAGgtaagagcatgcttctacttatttatgctaattggatggaccctgcaatt Alignment from Spaln_nt2Genome AGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAG caggtgttccagaatttcagagtatcattgggtgttcctttcctgcacagAGTATCATTACAGTCACATTTGAAGTACCAGGGAGTGCAAAGGAAGAATGTTTAAATGTATTTGTCCAGgtaagagcatgcttctacttatttatgctaattggatggaccctgcaatt Alignment from Pairagon AGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAG caggtgttccagaatttcagagtatcattgggtgttcctttcctgcacagAGTATCATTACAGTCACATTTGAAGTACCAGGGAGTGCAAAGGAAGAATGTTTAAATGTATTTGTCCAGgtaagagcatgcttctacttatttatgctaattggatggaccctgcaatt Alignment from Exonerate_protein2genome AGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAG caggtgttccagaatttcagagtatcattgggtgttcctttcctgcacagAGTATCATTACAGTCACATTTGAAGTACCAGGGAGTGCAAAGGAAGAATGTTTAAATGTATTTGTCCAGgtaagagcatgcttctacttatttatgctaattggatggaccctgcaatt Alignment from Exonerate_coding2genome AGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAG caggtgttccagaatttcagagtatcattgggtgttcctttcctgcacagAGTATCATTACAGTCACATTTGAAGTACCAGGGAGTGCAAAGGAAGAATGTTTAAATGTATTTGTCCAGgtaagagcatgcttctacttatttatgctaattggatggaccctgcaatt Alignment from GeneWise AGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAG caggtgttccagaatttcagagtatcattgggtgttcctttcctgcacagAGTATCATTACAGTCACATTTGAAGTACCAGGGAGTGCAAAGGAAGAATGTTTAAATGTATTTGTCCAGgtaagagcatgcttctacttatttatgctaattggatggaccctgcaatt #### Cbwd1_ID5358_10 --> 1 - 2 Original Alignment aGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAag ttcattttattatttagatattaagtggctgatggtgctatatcatgcaggGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAaggtatgtcgtgggaagttactcaagtatgttcttatgctctagcagcagac Alignment from CESAR aGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAag ttcattttattatttagatattaagtggctgatggtgctatatcatgcaggGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAaggtatgtcgtgggaagttactcaagtatgttcttatgctctagcagcagac Alignment from Spaln_aa2Genome AGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAAG ttcattttattatttagatattaagtggctgatggtgctatatcatgcagGGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAAGgtatgtcgtgggaagttactcaagtatgttcttatgctctagcagcagac Alignment from Spaln_nt2Genome AGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAAG ttcattttattatttagatattaagtggctgatggtgctatatcatgcagGGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAAGgtatgtcgtgggaagttactcaagtatgttcttatgctctagcagcagac Alignment from Pairagon AGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAAG ttcattttattatttagatattaagtggctgatggtgctatatcatgcagGGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAAGgtatgtcgtgggaagttactcaagtatgttcttatgctctagcagcagac Alignment from Exonerate_protein2genome AGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAAG ttcattttattatttagatattaagtggctgatggtgctatatcatgcagGGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAAGgtatgtcgtgggaagttactcaagtatgttcttatgctctagcagcagac Alignment from Exonerate_coding2genome AGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAAG ttcattttattatttagatattaagtggctgatggtgctatatcatgcagGGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAAGgtatgtcgtgggaagttactcaagtatgttcttatgctctagcagcagac Alignment from GeneWise AGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAAG ttcattttattatttagatattaagtggctgatggtgctatatcatgcagGGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAAGgtatgtcgtgggaagttactcaagtatgttcttatgctctagcagcagac #### Cbwd1_ID5360_8 --> 1 - 2 Original Alignment gCAAGTTGCATTGGCAGACATGATTCTCATCAATAAAACAGACTTGGTTTCAGAAGAGGAGCTAAACAACTTAAGAACAACTATCag aacatcaaggtcaggcatcacccaccttaataatctgtggatcattttagaCAAGTTGTGTTGGCAGATATGATTCCCATCAATAAGACTGACTTGATTTCAGAAGATGAACTTAATAACTTAACAACAACTATCaggtgagtagaagcaggggtccctagcatgggatatcaagttaaagttaaga Alignment from CESAR gCAAGTTGCATTGGCAGACATGATTCTCATCAATAAAACAGACTTGGTTTCAGAAGAGGAGCTAAACAACTTAAGAACAACTATCag aacatcaaggtcaggcatcacccaccttaataatctgtggatcattttagaCAAGTTGTGTTGGCAGATATGATTCCCATCAATAAGACTGACTTGATTTCAGAAGATGAACTTAATAACTTAACAACAACTATCaggtgagtagaagcaggggtccctagcatgggatatcaagttaaagttaaga Alignment from Spaln_aa2Genome GCAAGTTGCATTGGCAGACATGATTCTCATCAATAAAACAGACTTGGTTTCAGAAGAGGAGCTAAACAACTTAAGAACAACTATCAG aacatcaaggtcaggcatcacccaccttaataatctgtggatcattttagACAAGTTGTGTTGGCAGATATGATTCCCATCAATAAGACTGACTTGATTTCAGAAGATGAACTTAATAACTTAACAACAACTATCAGgtgagtagaagcaggggtccctagcatgggatatcaagttaaagttaaga Alignment from Spaln_nt2Genome GCAAGTTGCATTGGCAGACATGATTCTCATCAATAAAACAGACTTGGTTTCAGAAGAGGAGCTAAACAACTTAAGAACAACTATCAG aacatcaaggtcaggcatcacccaccttaataatctgtggatcattttagACAAGTTGTGTTGGCAGATATGATTCCCATCAATAAGACTGACTTGATTTCAGAAGATGAACTTAATAACTTAACAACAACTATCAGgtgagtagaagcaggggtccctagcatgggatatcaagttaaagttaaga Alignment from Pairagon GCAAGTTGCATTGGCAGACATGATTCTCATCAATAAAACAGACTTGGTTTCAGAAGAGGAGCTAAACAACTTAAGAACAACTATCAG aacatcaaggtcaggcatcacccaccttaataatctgtggatcattttagACAAGTTGTGTTGGCAGATATGATTCCCATCAATAAGACTGACTTGATTTCAGAAGATGAACTTAATAACTTAACAACAACTATCAGgtgagtagaagcaggggtccctagcatgggatatcaagttaaagttaaga Alignment from Exonerate_protein2genome GCAAGTTGCATTGGCAGACATGATTCTCATCAATAAAACAGACTTGGTTTCAGAAGAGGAGCTAAACAACTTAAGAACAACTATCAG aacatcaaggtcaggcatcacccaccttaataatctgtggatcattttagACAAGTTGTGTTGGCAGATATGATTCCCATCAATAAGACTGACTTGATTTCAGAAGATGAACTTAATAACTTAACAACAACTATCAGgtgagtagaagcaggggtccctagcatgggatatcaagttaaagttaaga Alignment from Exonerate_coding2genome GCAAGTTGCATTGGCAGACATGATTCTCATCAATAAAACAGACTTGGTTTCAGAAGAGGAGCTAAACAACTTAAGAACAACTATCAG aacatcaaggtcaggcatcacccaccttaataatctgtggatcattttagACAAGTTGTGTTGGCAGATATGATTCCCATCAATAAGACTGACTTGATTTCAGAAGATGAACTTAATAACTTAACAACAACTATCAGgtgagtagaagcaggggtccctagcatgggatatcaagttaaagttaaga Alignment from GeneWise -CAAGTTGCATTGGCAGACATGATTCTCATCAATAAAACAGACTTGGTTTCAGAAGAGGAGCTAAACAACTTAAGAACAACTATCAG aacatcaaggtcaggcatcacccaccttaataatctgtggatcattttagACAAGTTGTGTTGGCAGATATGATTCCCATCAATAAGACTGACTTGATTTCAGAAGATGAACTTAATAACTTAACAACAACTATCAGgtgagtagaagcaggggtccctagcatgggatatcaagttaaagttaaga #### Cbwd1_ID5369_2 --> 2 - 1 Original Alignment gtGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAg gctggtgtatagcctgcttacctggctatctttggcgtgtgccgtttcaggtGCCGGAAAGACCACACTACTGAATTACTTCCTGTCTAAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAggtaagccaagagcagagcacaattaatggaagtttgggctagattcagta Alignment from CESAR gtGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAg gctggtgtatagcctgcttacctggctatctttggcgtgtgccgtttcaggtGCCGGAAAGACCACACTACTGAATTACTTCCTGTCTAAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAggtaagccaagagcagagcacaattaatggaagtttgggctagattcagta Alignment from Spaln_aa2Genome GTGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAG gctggtgtatagcctgcttacctggctatctttggcgtgtgccgtttcagGTGCCGGAAAGACCACACTACTGAATTACTTCCTGTCTAAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAGgtaagccaagagcagagcacaattaatggaagtttgggctagattcagta Alignment from Spaln_nt2Genome GTGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAG gctggtgtatagcctgcttacctggctatctttggcgtgtgccgtttcagGTGCCGGAAAGACCACACTACTGAATTACTTCCTGTCTAAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAGgtaagccaagagcagagcacaattaatggaagtttgggctagattcagta Alignment from Pairagon CCGGGTACTTAGGTGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAG gctggtgtatagcctgcttacctggctatctttggcgtgtgccgtttcag------------GTGCCGGAAAGACCACACTACTGAATTACTTCCTGTCTAAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAGgtaagccaagagcagagcacaattaatggaagtttgggctagattcagta Alignment from Exonerate_protein2genome ACTTAGGTGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAG gctggtgtatagcctgcttacctggctatctttggcgtgtgccgTTTCAGGTGCCGGAAAGACCACACTACTGAATTACTTCCTGTCTAAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAGgtaagccaagagcagagcacaattaatggaagtttgggctagattcagta Alignment from Exonerate_coding2genome ACTTAGGTGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAG gctggtgtatagcctgcttacctggctatctttggcgtgtgccgTTTCAGGTGCCGGAAAGACCACACTACTGAATTACTTCCTGTCTAAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAGgtaagccaagagcagagcacaattaatggaagtttgggctagattcagta Alignment from GeneWise GTGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAG gctggtgtatagcctgcttacctggctatctttggcgtgtgccgtttcagGTGCCGGAAAGACCACACTACTGAATTACTTCCTGTCTAAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAGgtaagccaagagcagagcacaattaatggaagtttgggctagattcagta #### Ccdc147_ID10408_7 --> 0 - 1 Original Alignment GCCAAAGAGGATGAGATCCACCAGATGCGCCTCGACCTTGGGAAGCTTAACAAGATCCGCGAGCAGATCCACAAGAAACTGCACCAGCTCGATGACCAAAAGGCAGAAGTGGAGCAGCAGAAGGACACCCTGAAGAACCAGATCCTAGGGCTGGAGAGAg ttgtgtgtatcactgttcagactcccatacgtgcttcttgtttcccttagGCCAAGAGGGATGAGGTTCAGCAGATGCACCTGGATCTTGGGAAACTCAATACAATCTGTGAGCAAGTCCACAAGAAGCTACACCAGCTGGATGATCAAAAAGCGGAGGTGCAGCAGCAAAAGGACTACTTGAAGAACCAAATCCTTGGGCTAGAAAGAggtatagtgctatgtgactttactctatgtcaatccagcaaggaacaatgg Alignment from CESAR GCCAAAGAGGATGAGATCCACCAGATGCGCCTCGACCTTGGGAAGCTTAACAAGATCCGCGAGCAGATCCACAAGAAACTGCACCAGCTCGATGACCAAAAGGCAGAAGTGGAGCAGCAGAAGGACACCCTGAAGAACCAGATCCTAGGGCTGGAGAGAg ttgtgtgtatcactgttcagactcccatacgtgcttcttgtttcccttagGCCAAGAGGGATGAGGTTCAGCAGATGCACCTGGATCTTGGGAAACTCAATACAATCTGTGAGCAAGTCCACAAGAAGCTACACCAGCTGGATGATCAAAAAGCGGAGGTGCAGCAGCAAAAGGACTACTTGAAGAACCAAATCCTTGGGCTAGAAAGAggtatagtgctatgtgactttactctatgtcaatccagcaaggaacaatgg Alignment from Spaln_aa2Genome GCCAAAGAGGATGAGATCCACCAGATGCGCCTCGACCTTGGGAAGCTTAACAAGATCCGCGAGCAGATCCACAAGAAACTGCACCAGCTCGATGACCAAAAGGCAGAAGTGGAGCAGCAGAAGGACACCCTGAAGAACCAGATCCTAGGGCTGGAGAGAG ttgtgtgtatcactgttcagactcccatacgtgcttcttgtttcccttagGCCAAGAGGGATGAGGTTCAGCAGATGCACCTGGATCTTGGGAAACTCAATACAATCTGTGAGCAAGTCCACAAGAAGCTACACCAGCTGGATGATCAAAAAGCGGAGGTGCAGCAGCAAAAGGACTACTTGAAGAACCAAATCCTTGGGCTAGAAAGAGgtatagtgctatgtgactttactctatgtcaatccagcaaggaacaatgg Alignment from Spaln_nt2Genome GCCAAAGAGGATGAGATCCACCAGATGCGCCTCGACCTTGGGAAGCTTAACAAGATCCGCGAGCAGATCCACAAGAAACTGCACCAGCTCGATGACCAAAAGGCAGAAGTGGAGCAGCAGAAGGACACCCTGAAGAACCAGATCCTAGGGCTGGAGAGAG ttgtgtgtatcactgttcagactcccatacgtgcttcttgtttcccttagGCCAAGAGGGATGAGGTTCAGCAGATGCACCTGGATCTTGGGAAACTCAATACAATCTGTGAGCAAGTCCACAAGAAGCTACACCAGCTGGATGATCAAAAAGCGGAGGTGCAGCAGCAAAAGGACTACTTGAAGAACCAAATCCTTGGGCTAGAAAGAGgtatagtgctatgtgactttactctatgtcaatccagcaaggaacaatgg Alignment from Pairagon GCCAAAGAGGATGAGATCCACCAGATGCGCCTCGACCTTGGGAAGCTTAACAAGATCCGCGAGCAGATCCACAAGAAACTGCACCAGCTCGATGACCAAAAGGCAGAAGTGGAGCAGCAGAAGGACACCCTGAAGAACCAGATCCTAGGGCTGGAGAGAG ttgtgtgtatcactgttcagactcccatacgtgcttcttgtttcccttagGCCAAGAGGGATGAGGTTCAGCAGATGCACCTGGATCTTGGGAAACTCAATACAATCTGTGAGCAAGTCCACAAGAAGCTACACCAGCTGGATGATCAAAAAGCGGAGGTGCAGCAGCAAAAGGACTACTTGAAGAACCAAATCCTTGGGCTAGAAAGAGgtatagtgctatgtgactttactctatgtcaatccagcaaggaacaatgg Alignment from Exonerate_protein2genome GCCAAAGAGGATGAGATCCACCAGATGCGCCTCGACCTTGGGAAGCTTAACAAGATCCGCGAGCAGATCCACAAGAAACTGCACCAGCTCGATGACCAAAAGGCAGAAGTGGAGCAGCAGAAGGACACCCTGAAGAACCAGATCCTAGGGCTGGAGAGAG ttgtgtgtatcactgttcagactcccatacgtgcttcttgtttcccttagGCCAAGAGGGATGAGGTTCAGCAGATGCACCTGGATCTTGGGAAACTCAATACAATCTGTGAGCAAGTCCACAAGAAGCTACACCAGCTGGATGATCAAAAAGCGGAGGTGCAGCAGCAAAAGGACTACTTGAAGAACCAAATCCTTGGGCTAGAAAGAGgtatagtgctatgtgactttactctatgtcaatccagcaaggaacaatgg Alignment from Exonerate_coding2genome GCCAAAGAGGATGAGATCCACCAGATGCGCCTCGACCTTGGGAAGCTTAACAAGATCCGCGAGCAGATCCACAAGAAACTGCACCAGCTCGATGACCAAAAGGCAGAAGTGGAGCAGCAGAAGGACACCCTGAAGAACCAGATCCTAGGGCTGGAGAGAG ttgtgtgtatcactgttcagactcccatacgtgcttcttgtttcccttagGCCAAGAGGGATGAGGTTCAGCAGATGCACCTGGATCTTGGGAAACTCAATACAATCTGTGAGCAAGTCCACAAGAAGCTACACCAGCTGGATGATCAAAAAGCGGAGGTGCAGCAGCAAAAGGACTACTTGAAGAACCAAATCCTTGGGCTAGAAAGAGgtatagtgctatgtgactttactctatgtcaatccagcaaggaacaatgg Alignment from GeneWise GCCAAAGAGGATGAGATCCACCAGATGCGCCTCGACCTTGGGAAGCTTAACAAGATCCGCGAGCAGATCCACAAGAAACTGCACCAGCTCGATGACCAAAAGGCAGAAGTGGAGCAGCAGAAGGACACCCTGAAGAACCAGATCCTAGGGCTGGAGAGAG ttgtgtgtatcactgttcagactcccatacgtgcttcttgtttcccttagGCCAAGAGGGATGAGGTTCAGCAGATGCACCTGGATCTTGGGAAACTCAATACAATCTGTGAGCAAGTCCACAAGAAGCTACACCAGCTGGATGATCAAAAAGCGGAGGTGCAGCAGCAAAAGGACTACTTGAAGAACCAAATCCTTGGGCTAGAAAGAGgtatagtgctatgtgactttactctatgtcaatccagcaaggaacaatgg #### Ccdc147_ID10412_9 --> 0 - 0 Original Alignment AATATGCTCAAGGCGGTCAGTGCGACCCAGAAGCAGGTGGACCTGGTGAAACTCCACGAGCAAGCCAAGAAGAACCTGGAGGAGGAGATCCAGAACTACAAGGACGAGGCCCAGAAGCAGAGGAAGATCATCTTTCAGCTGGAAAAGGAACGGGACCGGTACATCAACGAGGCCAGCGACCTCACCCAGAGG cctgggtcagtgtaccttaaggaaaaattagccatgccttccttttctagACTATGCTCAAGGTTGTGAGTGCCACACAAAAGCAGGTGGACCTAGTGAAACTTCATGAACATGCCAAGAAAAACCTGGATGAGGAGACCCAGAACTACAAGGATGATGCCCAAAAGCAAAGGAAGATCATCTTTCAACTGGAGAAAGAGCAGGATCGATATATCAACAAGGCAAGTGACCTCACCCAAAGGgtatgtcatccacgctgttgtgattgggcagttatagcagaaatatcccc Alignment from CESAR AATATGCTCAAGGCGGTCAGTGCGACCCAGAAGCAGGTGGACCTGGTGAAACTCCACGAGCAAGCCAAGAAGAACCTGGAGGAGGAGATCCAGAACTACAAGGACGAGGCCCAGAAGCAGAGGAAGATCATCTTTCAGCTGGAAAAGGAACGGGACCGGTACATCAACGAGGCCAGCGACCTCACCCAGAGG cctgggtcagtgtaccttaaggaaaaattagccatgccttccttttctagACTATGCTCAAGGTTGTGAGTGCCACACAAAAGCAGGTGGACCTAGTGAAACTTCATGAACATGCCAAGAAAAACCTGGATGAGGAGACCCAGAACTACAAGGATGATGCCCAAAAGCAAAGGAAGATCATCTTTCAACTGGAGAAAGAGCAGGATCGATATATCAACAAGGCAAGTGACCTCACCCAAAGGgtatgtcatccacgctgttgtgattgggcagttatagcagaaatatcccc Alignment from Spaln_aa2Genome AATATGCTCAAGGCGGTCAGTGCGACCCAGAAGCAGGTGGACCTGGTGAAACTCCACGAGCAAGCCAAGAAGAACCTGGAGGAGGAGATCCAGAACTACAAGGACGAGGCCCAGAAGCAGAGGAAGATCATCTTTCAGCTGGAAAAGGAACGGGACCGGTACATCAACGAGGCCAGCGACCTCACCCAGAGG cctgggtcagtgtaccttaaggaaaaattagccatgccttccttttctagACTATGCTCAAGGTTGTGAGTGCCACACAAAAGCAGGTGGACCTAGTGAAACTTCATGAACATGCCAAGAAAAACCTGGATGAGGAGACCCAGAACTACAAGGATGATGCCCAAAAGCAAAGGAAGATCATCTTTCAACTGGAGAAAGAGCAGGATCGATATATCAACAAGGCAAGTGACCTCACCCAAAGGgtatgtcatccacgctgttgtgattgggcagttatagcagaaatatcccc Alignment from Spaln_nt2Genome AATATGCTCAAGGCGGTCAGTGCGACCCAGAAGCAGGTGGACCTGGTGAAACTCCACGAGCAAGCCAAGAAGAACCTGGAGGAGGAGATCCAGAACTACAAGGACGAGGCCCAGAAGCAGAGGAAGATCATCTTTCAGCTGGAAAAGGAACGGGACCGGTACATCAACGAGGCCAGCGACCTCACCCAGAGG cctgggtcagtgtaccttaaggaaaaattagccatgccttccttttctagACTATGCTCAAGGTTGTGAGTGCCACACAAAAGCAGGTGGACCTAGTGAAACTTCATGAACATGCCAAGAAAAACCTGGATGAGGAGACCCAGAACTACAAGGATGATGCCCAAAAGCAAAGGAAGATCATCTTTCAACTGGAGAAAGAGCAGGATCGATATATCAACAAGGCAAGTGACCTCACCCAAAGGgtatgtcatccacgctgttgtgattgggcagttatagcagaaatatcccc Alignment from Pairagon AATATGCTCAAGGCGGTCAGTGCGACCCAGAAGCAGGTGGACCTGGTGAAACTCCACGAGCAAGCCAAGAAGAACCTGGAGGAGGAGATCCAGAACTACAAGGACGAGGCCCAGAAGCAGAGGAAGATCATCTTTCAGCTGGAAAAGGAACGGGACCGGTACATCAACGAGGCCAGCGACCTCACCCAGAGG cctgggtcagtgtaccttaaggaaaaattagccatgccttccttttctagACTATGCTCAAGGTTGTGAGTGCCACACAAAAGCAGGTGGACCTAGTGAAACTTCATGAACATGCCAAGAAAAACCTGGATGAGGAGACCCAGAACTACAAGGATGATGCCCAAAAGCAAAGGAAGATCATCTTTCAACTGGAGAAAGAGCAGGATCGATATATCAACAAGGCAAGTGACCTCACCCAAAGGgtatgtcatccacgctgttgtgattgggcagttatagcagaaatatcccc Alignment from Exonerate_protein2genome AATATGCTCAAGGCGGTCAGTGCGACCCAGAAGCAGGTGGACCTGGTGAAACTCCACGAGCAAGCCAAGAAGAACCTGGAGGAGGAGATCCAGAACTACAAGGACGAGGCCCAGAAGCAGAGGAAGATCATCTTTCAGCTGGAAAAGGAACGGGACCGGTACATCAACGAGGCCAGCGACCTCACCCAGAGG cctgggtcagtgtaccttaaggaaaaattagccatgccttccttttctagACTATGCTCAAGGTTGTGAGTGCCACACAAAAGCAGGTGGACCTAGTGAAACTTCATGAACATGCCAAGAAAAACCTGGATGAGGAGACCCAGAACTACAAGGATGATGCCCAAAAGCAAAGGAAGATCATCTTTCAACTGGAGAAAGAGCAGGATCGATATATCAACAAGGCAAGTGACCTCACCCAAAGGgtatgtcatccacgctgttgtgattgggcagttatagcagaaatatcccc Alignment from Exonerate_coding2genome AATATGCTCAAGGCGGTCAGTGCGACCCAGAAGCAGGTGGACCTGGTGAAACTCCACGAGCAAGCCAAGAAGAACCTGGAGGAGGAGATCCAGAACTACAAGGACGAGGCCCAGAAGCAGAGGAAGATCATCTTTCAGCTGGAAAAGGAACGGGACCGGTACATCAACGAGGCCAGCGACCTCACCCAGAGG cctgggtcagtgtaccttaaggaaaaattagccatgccttccttttctagACTATGCTCAAGGTTGTGAGTGCCACACAAAAGCAGGTGGACCTAGTGAAACTTCATGAACATGCCAAGAAAAACCTGGATGAGGAGACCCAGAACTACAAGGATGATGCCCAAAAGCAAAGGAAGATCATCTTTCAACTGGAGAAAGAGCAGGATCGATATATCAACAAGGCAAGTGACCTCACCCAAAGGgtatgtcatccacgctgttgtgattgggcagttatagcagaaatatcccc Alignment from GeneWise AATATGCTCAAGGCGGTCAGTGCGACCCAGAAGCAGGTGGACCTGGTGAAACTCCACGAGCAAGCCAAGAAGAACCTGGAGGAGGAGATCCAGAACTACAAGGACGAGGCCCAGAAGCAGAGGAAGATCATCTTTCAGCTGGAAAAGGAACGGGACCGGTACATCAACGAGGCCAGCGACCTCACCCAGAGG cctgggtcagtgtaccttaaggaaaaattagccatgccttccttttctagACTATGCTCAAGGTTGTGAGTGCCACACAAAAGCAGGTGGACCTAGTGAAACTTCATGAACATGCCAAGAAAAACCTGGATGAGGAGACCCAGAACTACAAGGATGATGCCCAAAAGCAAAGGAAGATCATCTTTCAACTGGAGAAAGAGCAGGATCGATATATCAACAAGGCAAGTGACCTCACCCAAAGGgtatgtcatccacgctgttgtgattgggcagttatagcagaaatatcccc #### Ccdc147_ID10441_16 --> 0 - 0 Original Alignment GAGAAAGAGAAGCTGTATGTGGAGCTGAAGCACATCTTGGCCCGGCAGCCTGGCCCAGAGGCTGCGGAGCAGCTGCAGATCTACCGGCATACACTGCGCGAGAAGACTAAGCAGCTGAAA tgttctataaacctggaatcaacttggattatttatttatttaattttagCAAAAAGAGAAGCTATATGTGGAGCTGAGCCACATTTTGGCCCGTCAACCTGGGCCAGAGGCTGCAGAGCAACTACAGATCTATCATCACACATTGTGTGAAAAGGCAAAACAGCTGAAAgtaagaacctactagtctgcagacatatttaccacacaaccactcttctg Alignment from CESAR GAGAAAGAGAAGCTGTATGTGGAGCTGAAGCACATCTTGGCCCGGCAGCCTGGCCCAGAGGCTGCGGAGCAGCTGCAGATCTACCGGCATACACTGCGCGAGAAGACTAAGCAGCTGAAA tgttctataaacctggaatcaacttggattatttatttatttaattttagCAAAAAGAGAAGCTATATGTGGAGCTGAGCCACATTTTGGCCCGTCAACCTGGGCCAGAGGCTGCAGAGCAACTACAGATCTATCATCACACATTGTGTGAAAAGGCAAAACAGCTGAAAgtaagaacctactagtctgcagacatatttaccacacaaccactcttctg Alignment from Spaln_aa2Genome GAGAAAGAGAAGCTGTATGTGGAGCTGAAGCACATCTTGGCCCGGCAGCCTGGCCCAGAGGCTGCGGAGCAGCTGCAGATCTACCGGCATACACTGCGCGAGAAGACTAAGCAGCTGAAA tgttctataaacctggaatcaacttggattatttatttatttaattttagCAAAAAGAGAAGCTATATGTGGAGCTGAGCCACATTTTGGCCCGTCAACCTGGGCCAGAGGCTGCAGAGCAACTACAGATCTATCATCACACATTGTGTGAAAAGGCAAAACAGCTGAAAgtaagaacctactagtctgcagacatatttaccacacaaccactcttctg Alignment from Spaln_nt2Genome GAGAAAGAGAAGCTGTATGTGGAGCTGAAGCACATCTTGGCCCGGCAGCCTGGCCCAGAGGCTGCGGAGCAGCTGCAGATCTACCGGCATACACTGCGCGAGAAGACTAAGCAGCTGAAA tgttctataaacctggaatcaacttggattatttatttatttaattttagCAAAAAGAGAAGCTATATGTGGAGCTGAGCCACATTTTGGCCCGTCAACCTGGGCCAGAGGCTGCAGAGCAACTACAGATCTATCATCACACATTGTGTGAAAAGGCAAAACAGCTGAAAgtaagaacctactagtctgcagacatatttaccacacaaccactcttctg Alignment from Pairagon GAGAAAGAGAAGCTGTATGTGGAGCTGAAGCACATCTTGGCCCGGCAGCCTGGCCCAGAGGCTGCGGAGCAGCTGCAGATCTACCGGCATACACTGCGCGAGAAGACTAAGCAGCTGAAA tgttctataaacctggaatcaacttggattatttatttatttaattttagCAAAAAGAGAAGCTATATGTGGAGCTGAGCCACATTTTGGCCCGTCAACCTGGGCCAGAGGCTGCAGAGCAACTACAGATCTATCATCACACATTGTGTGAAAAGGCAAAACAGCTGAAAgtaagaacctactagtctgcagacatatttaccacacaaccactcttctg Alignment from Exonerate_protein2genome GAGAAAGAGAAGCTGTATGTGGAGCTGAAGCACATCTTGGCCCGGCAGCCTGGCCCAGAGGCTGCGGAGCAGCTGCAGATCTACCGGCATACACTGCGCGAGAAGACTAAGCAGCTGAAA tgttctataaacctggaatcaacttggattatttatttatttaattttagCAAAAAGAGAAGCTATATGTGGAGCTGAGCCACATTTTGGCCCGTCAACCTGGGCCAGAGGCTGCAGAGCAACTACAGATCTATCATCACACATTGTGTGAAAAGGCAAAACAGCTGAAAgtaagaacctactagtctgcagacatatttaccacacaaccactcttctg Alignment from Exonerate_coding2genome tgttctataaacctggaatcaacttggattatttatttatttaattttagcaaaaagagaagctatatgtggagctgagccacattttggcccgtcaacctgggccagaggctgcagagcaactacagatctatcatcacacattgtgtgaaaaggcaaaacagctgaaagtaagaacctactagtctgcagacatatttaccacacaaccactcttctg Alignment from GeneWise GAGAAAGAGAAGCTGTATGTGGAGCTGAAGCACATCTTGGCCCGGCAGCCTGGCCCAGAGGCTGCGGAGCAGCTGCAGATCTACCGGCATACACTGCGCGAGAAGACTAAGCAGCTGAAA tgttctataaacctggaatcaacttggattatttatttatttaattttagCAAAAAGAGAAGCTATATGTGGAGCTGAGCCACATTTTGGCCCGTCAACCTGGGCCAGAGGCTGCAGAGCAACTACAGATCTATCATCACACATTGTGTGAAAAGGCAAAACAGCTGAAAgtaagaacctactagtctgcagacatatttaccacacaaccactcttctg #### Ccdc172_ID12725_5 --> 2 - 1 Original Alignment aaATGAAGTCGGTGGAACGTAACCGTGGACAGTTATGGGAACTCCAAAAACTAAAAAATGAACTGTTACAAGAATTATTTACTCTCCAGAAAAAGCTTAAAg tgggagcacttaagaacttagtgcttagagccgcgggttctgtgttacagaaATGAAGCCAGCAGAGCATAATCATGGACAGTTAAGGACACTTCAAAAGCTAAAAAACAAATTGCTGAAAGAACTATTTGCTCTCCAGAAGAAGCTTAAGtgtgagtgctttacctgcccattgatcttgattaacatctcatcatttgtt Alignment from CESAR aaATGAAGTCGGTGGAACGTAACCGTGGACAGTTATGGGAACTCCAAAAACTAAAAAATGAACTGTTACAAGAATTATTTACTCTCCAGAAAAAGCTTAAAg tgggagcacttaagaacttagtgcttagagccgcgggttctgtgttacagaaATGAAGCCAGCAGAGCATAATCATGGACAGTTAAGGACACTTCAAAAGCTAAAAAACAAATTGCTGAAAGAACTATTTGCTCTCCAGAAGAAGCTTAAGtgtgagtgctttacctgcccattgatcttgattaacatctcatcatttgtt Alignment from Spaln_aa2Genome AAATGAAGTCGGTGGAACGTAACCGTGGACAGTTATGGGAACTCCAAAAACTAAAAAATGAACTGTTACAAGAATTATTTACTCTCCAGAAAAAGCTTAAAG tgggagcacttaagaacttagtgcttagagccgcgggttctgtgttacagAAATGAAGCCAGCAGAGCATAATCATGGACAGTTAAGGACACTTCAAAAGCTAAAAAACAAATTGCTGAAAGAACTATTTGCTCTCCAGAAGAAGCTTAAGTgtgagtgctttacctgcccattgatcttgattaacatctcatcatttgtt Alignment from Spaln_nt2Genome AAATGAAGTCGGTGGAACGTAACCGTGGACAGTTATGGGAACTCCAAAAACTAAAAAATGAACTGTTACAAGAATTATTTACTCTCCAGAAAAAGCTTAAAG tgggagcacttaagaacttagtgcttagagccgcgggttctgtgttacagAAATGAAGCCAGCAGAGCATAATCATGGACAGTTAAGGACACTTCAAAAGCTAAAAAACAAATTGCTGAAAGAACTATTTGCTCTCCAGAAGAAGCTTAAGTgtgagtgctttacctgcccattgatcttgattaacatctcatcatttgtt Alignment from Pairagon AAATGAAGTCGGTGGAACGTAACCGTGGACAGTTATGGGAACTCCAAAAACTAAAAAATGAACTGTTACAAGAATTATTTACTCTCCAGAAAAAGCTTAA tgggagcacttaagaacttagtgcttagagccgcgggttctgtgttacagAAATGAAGCCAGCAGAGCATAATCATGGACAGTTAAGGACACTTCAAAAGCTAAAAAACAAATTGCTGAAAGAACTATTTGCTCTCCAGAAGAAGCTTAAgtgtgagtgctttacctgcccattgatcttgattaacatctcatcatttgtt Alignment from Exonerate_protein2genome AAATGAAGTCGGTGGAACGTAACCGTGGACAGTTATGGGAACTCCAAAAACTAAAAAATGAACTGTTACAAGAATTATTTACTCTCCAGAAAAAGCTTAAAG tgggagcacttaagaacttagtgcttagagccgcgggttctgtgttacagAAATGAAGCCAGCAGAGCATAATCATGGACAGTTAAGGACACTTCAAAAGCTAAAAAACAAATTGCTGAAAGAACTATTTGCTCTCCAGAAGAAGCTTAAGTgtgagtgctttacctgcccattgatcttgattaacatctcatcatttgtt Alignment from Exonerate_coding2genome AAATGAAGTCGGTGGAACGTAACCGTGGACAGTTATGGGAACTCCAAAAACTAAAAAATGAACTGTTACAAGAATTATTTACTCTCCAGAAAAAGCTTAAAG tgggagcacttaagaacttagtgcttagagccgcgggttctgtgttacagAAATGAAGCCAGCAGAGCATAATCATGGACAGTTAAGGACACTTCAAAAGCTAAAAAACAAATTGCTGAAAGAACTATTTGCTCTCCAGAAGAAGCTTAAGTgtgagtgctttacctgcccattgatcttgattaacatctcatcatttgtt Alignment from GeneWise AAATGAAGTCGGTGGAACGTAACCGTGGACAGTTATGGGAACTCCAAAAACTAAAAAATGAACTGTTACAAGAATTATTTACTCTCCAGAAAAAGCTTAAAG tgggagcacttaagaacttagtgcttagagccgcgggttctgtgttacagAAATGAAGCCAGCAGAGCATAATCATGGACAGTTAAGGACACTTCAAAAGCTAAAAAACAAATTGCTGAAAGAACTATTTGCTCTCCAGAAGAAGCTTAAGTgtgagtgctttacctgcccattgatcttgattaacatctcatcatttgtt #### Ccdc88b_ID1824_25 --> 2 - 1 Original Alignment ggTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAg tgtcatgatgacctgcctgatccatacactgccagcctcctcccttctagggTCATCGTCACCAGCACCCATGCACCAAATTGAGAGCTCCCTTTGCTTGGGAGATGAGACCCTAGCCGGTGGGCAGCGACGGAGTCTCAGTTCTCAGTTCTCTATTGGACGAAGTCCAGCTTCATTCAGTCCCAGC---ACCTCACAGCAATGGTTCAAACAGCAGAGGCCAGGCCCCCTTGGGGCACTGAGTACCTACAGCAAAggtaataggtgttttactataatttcaatttcgatagttttaagttgtcaa Alignment from CESAR ggTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAg tgtcatgatgacctgcctgatccatacactgccagcctcctcccttctagggTCATCGTCACCAGCACCCATGCACCAAATTGAGAGCTCCCTTTGCTTGGGAGATGAGACCCTAGCCGGTGGGCAGCGACGGAGTCTCAGTTCTCAGTTCTCTATTGGACGAAGTCCAGCTTCATTCAGTCCCAGC---ACCTCACAGCAATGGTTCAAACAGCAGAGGCCAGGCCCCCTTGGGGCACTGAGTACCTACAGCAAAggtaataggtgttttactataatttcaatttcgatagttttaagttgtcaa Alignment from Spaln_aa2Genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG tgtcatgatgacctgcctgatccatacactgccagcctcctcccttctagGGTCATCGTCACCAGCACCCATGCACCAAATTGAGAGCTCCCTTTGCTTGGGAGATGAGACCCTAGCCGGTGGGCAGCGACGGAGTCTCAGTTCTCAGTTCTCTATTGGACGAAGTCCAGCTTCATTCAGTCCCAGC---ACCTCACAGCAATGGTTCAAACAGCAGAGGCCAGGCCCCCTTGGGGCACTGAGTACCTACAGCAAAGgtaataggtgttttactataatttcaatttcgatagttttaagttgtcaa Alignment from Spaln_nt2Genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG tgtcatgatgacctgcctgatccatacactgccagcctcctcccttctagGGTCATCGTCACCAGCACCCATGCACCAAATTGAGAGCTCCCTTTGCTTGGGAGATGAGACCCTAGCCGGTGGGCAGCGACGGAGTCTCAGTTCTCAGTTCTCTATTGGACGAAGTCCAGCTTCATTCAGTCCCAG---CACCTCACAGCAATGGTTCAAACAGCAGAGGCCAGGCCCCCTTGGGGCACTGAGTACCTACAGCAAAGgtaataggtgttttactataatttcaatttcgatagttttaagttgtcaa Alignment from Pairagon GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG tgtcatgatgacctgcctgatccatacactgccagcctcctcccttctagGGTCATCGTCACCAGCACCCATGCACCAAATTGAGAGCTCCCTTTGCTTGGGAGATGAGACCCTAGCCGGTGGGCAGCGACGGAGTCTCAGTTCTCAGTTCTCTATTGGACGAAGTCCAGCTTCATTCAGTCCCAG---CACCTCACAGCAATGGTTCAAACAGCAGAGGCCAGGCCCCCTTGGGGCACTGAGTACCTACAGCAAAGgtaataggtgttttactataatttcaatttcgatagttttaagttgtcaa Alignment from Exonerate_protein2genome tgtcatgatgacctgcctgatccatacactgccagcctcctcccttctagggtcatcgtcaccagcacccatgcaccaaattgagagctccctttgcttgggagatgagaccctagccggtgggcagcgacggagtctcagttctcagttctctattggacgaagtccagcttcattcagtcccagcacctcacagcaatggttcaaacagcagaggccaggcccccttggggcactgagtacctacagcaaaggtaataggtgttttactataatttcaatttcgatagttttaagttgtcaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG tgtcatgatgacctgcctgatccatacactgccagcctcctcccttctagGGTCATCGTCACCAGCACCCATGCACCAAATTGAGAGCTCCCTTTGCTTGGGAGATGAGACCCTAGCCGGTGGGCAGCGACGGAGTCTCAGTTCTCAGTTCTCTATTGGACGAAGTCCAGCTTCATTCAGTCCC---AGCACCTCACAGCAATGGTTCAAACAGCAGAGGCCAGGCCCCCTTGGGGCACTGAGTACCTACAGCAAAGgtaataggtgttttactataatttcaatttcgatagttttaagttgtcaa #### Ccdc88b_ID1826_23 --> 1 - 2 Original Alignment gGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCaa acccacttaaggtcagattgatgttacctatgtcttgttctgttttccaggGACCAACTCAATGGGTTGCGCCAACAGAAACAGAAGCTGTTGGAT---ATCATGGACCAATACCGGGTAGTACAGCCTGGGCCACTCCCCCATGCTaagtgggttagcaccttatttttcatgttagtattttgctttattccacagc Alignment from CESAR gGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCaa gcccacttaaggtcagattgatgttacctatgtcttgttctgttttccaggGACCAACTCAATGGGTTGCGCCAACAGAAACAGAAGCTGTTGGAT---ATCATGGACCAATACCGGGTAGTACAGCCTGGGCCACTCCCCCATGCTaagtgggttagcaccttatttttcatgttagtattttgctttattccacagc Alignment from Spaln_aa2Genome GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA acccacttaaggtcagattgatgttacctatgtcttgttctgttttccagGGACCAACTCAATGGGTTGCGCCAACAGAAACAGAAGCTGTTGGAT---ATCATGGACCAATACCGGGTAGTACAGCCTGGGCCACTCCCCCATGCTAAgtgggttagcaccttatttttcatgttagtattttgctttattccacagc Alignment from Spaln_nt2Genome GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA acccacttaaggtcagattgatgttacctatgtcttgttctgttttccagGGACCAACTCAATGGGTTGCGCCAACAGAAACAGAAGCTGTTGGAT---ATCATGGACCAATACCGGGTAGTACAGCCTGGGCCACTCCCCCATGCTAAgtgggttagcaccttatttttcatgttagtattttgctttattccacagc Alignment from Pairagon GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA acccacttaaggtcagattgatgttacctatgtcttgttctgttttccagGGACCAACTCAATGGGTTGCGCCAACAGAAACAGAAGCTGTTGG---ATATCATGGACCAATACCGGGTAGTACAGCCTGGGCCACTCCCCCATGCTAAgtgggttagcaccttatttttcatgttagtattttgctttattccacagc Alignment from Exonerate_protein2genome GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA acccacttaaggtcagattgatgttacctatgtcttgttctgttttccagGGACCAACTCAATGGGTTGCGCCAACAGAAACAGAAGCTGTTGGAT---ATCATGGACCAATACCGGGTAGTACAGCCTGGGCCACTCCCCCATGCTAAgtgggttagcaccttatttttcatgttagtattttgctttattccacagc Alignment from Exonerate_coding2genome acccacttaaggtcagattgatgttacctatgtcttgttctgttttccagggaccaactcaatgggttgcgccaacagaaacagaagctgttggatatcatggaccaataccgggtagtacagcctgggccactcccccatgctaagtgggttagcaccttatttttcatgttagtattttgctttattccacagc Alignment from GeneWise GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA acccacttaaggtcagattgatgttacctatgtcttgttctgttttccagGGACCAACTCAATGGGTTGCGCCAACAGAAACAGAAGCTGTTGGAT---ATCATGGACCAATACCGGGTAGTACAGCCTGGGCCACTCCCCCATGCTAAgtgggttagcaccttatttttcatgttagtattttgctttattccacagc #### Ccdc88b_ID1827_22 --> 0 - 2 Original Alignment CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACct cttcaatggataggtctactaataaattcacccctcctcctcgcccccagCTCTTAACACAGCTTCATACAGTACAAAAAGAGGAGAATAGGCAGCTTTTAGTAGAGGTGAAGGCTTCAAGCCGTACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGT---GACCCTGTGCATTGTGAGCAGCCAGAATACctgtaagcccacttaaggtcagattgatgttacctgtctgattctatccttt Alignment from CESAR CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACct cttcaatggataggtctactaataaattcacccctcctcctcgcccccagCTCTTAACACAGCTTCATACAGTACAAAAAGAGGAGAATAGGCAGCTTTTAGTAGAGGTGAAGGCTTCAAGCCGTACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGT---GACCCTGTGCATTGTGAGCAGCCAGAATACctgtaagcccacttaaggtcagattgatgttacctatgtcttgttctgtttt Alignment from Spaln_aa2Genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT cttcaatggataggtctactaataaattcacccctcctcctcgcccccagCTCTTAACACAGCTTCATACAGTACAAAAAGAGGAGAATAGGCAGCTTTTAGTAGAGGTGAAGGCTTCAAGCCGTACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGT---GACCCTGTGCATTGTGAGCAGCCAGAATACCTgtaagcccacttaaggtcagattgatgttacctgtctgattctatccttt Alignment from Spaln_nt2Genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT cttcaatggataggtctactaataaattcacccctcctcctcgcccccagCTCTTAACACAGCTTCATACAGTACAAAAAGAGGAGAATAGGCAGCTTTTAGTAGAGGTGAAGGCTTCAAGCCGTACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGA---GTGACCCTGTGCATTGTGAGCAGCCAGAATACCTgtaagcccacttaaggtcagattgatgttacctgtctgattctatccttt Alignment from Pairagon CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT cttcaatggataggtctactaataaattcacccctcctcctcgcccccagCTCTTAACACAGCTTCATACAGTACAAAAAGAGGAGAATAGGCAGCTTTTAGTAGAGGTGAAGGCTTCAAGCCGTACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGA---GTGACCCTGTGCATTGTGAGCAGCCAGAATACCTgtaagcccacttaaggtcagattgatgttacctgtctgattctatccttt Alignment from Exonerate_protein2genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT cttcaatggataggtctactaataaattcacccctcctcctcgcccccagCTCTTAACACAGCTTCATACAGTACAAAAAGAGGAGAATAGGCAGCTTTTAGTAGAGGTGAAGGCTTCAAGCCGTACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGT---GACCCTGTGCATTGTGAGCAGCCAGAATACCTgtaagcccacttaaggtcagattgatgttacctgtctgattctatccttt Alignment from Exonerate_coding2genome ACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGT cttcaatggataggtctactaataaattcacccctcctcctcgcccccagctcttaacacagcttcatacagtacaaaaagaggagaataggcagcttttagtagagGTGAAGGCTTCAAGCCGTACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGTGACCCTGTGCATTGTGAGCAGCCAGAATACCTGTAAGCCCACTTAAGGTCAGATTGATGTTACCTGTCTGATTCTATCCTTT Alignment from GeneWise CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT cttcaatggataggtctactaataaattcacccctcctcctcgcccccagCTCTTAACACAGCTTCATACAGTACAAAAAGAGGAGAATAGGCAGCTTTTAGTAGAGGTGAAGGCTTCAAGCCGTACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGT---GACCCTGTGCATTGTGAGCAGCCAGAATACCTgtaagcccacttaaggtcagattgatgttacctgtctgattctatccttt #### Ccdc88b_ID1830_19 --> 0 - 2 Original Alignment GCTGAAAAGTCAATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAAGCTGGGGGTGCTAGAAGAGGAGGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCGGGACCATGAGGCCTTGGTGCAGCTGCAGCGACGGCAGGAGACGGAGCTGGAGGGACTGTTGGTGCGGCACCGAGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCcg actctataatgcatcaggttccttgtcatcccacatcaatttacccctagGCTGAAAAATCAATGATGGAGATGCAGGGTCAGAGGCTGCATAGGAAGCTAGGGGTATTAGAAGAGGATGTTCGTGCAGCAAGATGGGCTGAAGAGGAGACACGAGGGCAGCAGCAGGCTTTACTTCGTGACCATAAAGCCTTAGTACAGTTACAACGTCGCCAGGAGACAGAGCTAGAAGGACTGCTGGTACAGCACCGGGATCTCAAAGCTAATATGCGAGCATTAGAACTGGCCCATTGTGAGCTTCGTGGCcggtatgtgttcttaattggagaaattctttattcactcaccttacttgctt Alignment from CESAR GCTGAAAAGTCAATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAAGCTGGGGGTGCTAGAAGAGGAGGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCGGGACCATGAGGCCTTGGTGCAGCTGCAGCGACGGCAGGAGACGGAGCTGGAGGGACTGTTGGTGCGGCACCGAGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCcg actctataatgcatcaggttccttgtcatcccacatcaatttacccctagGCTGAAAAATCAATGATGGAGATGCAGGGTCAGAGGCTGCATAGGAAGCTAGGGGTATTAGAAGAGGATGTTCGTGCAGCAAGATGGGCTGAAGAGGAGACACGAGGGCAGCAGCAGGCTTTACTTCGTGACCATAAAGCCTTAGTACAGTTACAACGTCGCCAGGAGACAGAGCTAGAAGGACTGCTGGTACAGCACCGGGATCTCAAAGCTAATATGCGAGCATTAGAACTGGCCCATTGTGAGCTTCGTGGCcggtatgtgttcttaattggagaaattctttattcactcaccttacttgctt Alignment from Spaln_aa2Genome GCTGAAAAGTCAATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAAGCTGGGGGTGCTAGAAGAGGAGGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCGGGACCATGAGGCCTTGGTGCAGCTGCAGCGACGGCAGGAGACGGAGCTGGAGGGACTGTTGGTGCGGCACCGAGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCCG actctataatgcatcaggttccttgtcatcccacatcaatttacccctagGCTGAAAAATCAATGATGGAGATGCAGGGTCAGAGGCTGCATAGGAAGCTAGGGGTATTAGAAGAGGATGTTCGTGCAGCAAGATGGGCTGAAGAGGAGACACGAGGGCAGCAGCAGGCTTTACTTCGTGACCATAAAGCCTTAGTACAGTTACAACGTCGCCAGGAGACAGAGCTAGAAGGACTGCTGGTACAGCACCGGGATCTCAAAGCTAATATGCGAGCATTAGAACTGGCCCATTGTGAGCTTCGTGGCCGgtatgtgttcttaattggagaaattctttattcactcaccttacttgctt Alignment from Spaln_nt2Genome GCTGAAAAGTCAATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAAGCTGGGGGTGCTAGAAGAGGAGGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCGGGACCATGAGGCCTTGGTGCAGCTGCAGCGACGGCAGGAGACGGAGCTGGAGGGACTGTTGGTGCGGCACCGAGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCCG actctataatgcatcaggttccttgtcatcccacatcaatttacccctagGCTGAAAAATCAATGATGGAGATGCAGGGTCAGAGGCTGCATAGGAAGCTAGGGGTATTAGAAGAGGATGTTCGTGCAGCAAGATGGGCTGAAGAGGAGACACGAGGGCAGCAGCAGGCTTTACTTCGTGACCATAAAGCCTTAGTACAGTTACAACGTCGCCAGGAGACAGAGCTAGAAGGACTGCTGGTACAGCACCGGGATCTCAAAGCTAATATGCGAGCATTAGAACTGGCCCATTGTGAGCTTCGTGGCCGgtatgtgttcttaattggagaaattctttattcactcaccttacttgctt Alignment from Pairagon GCTGAAAAGTCAATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAAGCTGGGGGTGCTAGAAGAGGAGGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCGGGACCATGAGGCCTTGGTGCAGCTGCAGCGACGGCAGGAGACGGAGCTGGAGGGACTGTTGGTGCGGCACCGAGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCCG actctataatgcatcaggttccttgtcatcccacatcaatttacccctagGCTGAAAAATCAATGATGGAGATGCAGGGTCAGAGGCTGCATAGGAAGCTAGGGGTATTAGAAGAGGATGTTCGTGCAGCAAGATGGGCTGAAGAGGAGACACGAGGGCAGCAGCAGGCTTTACTTCGTGACCATAAAGCCTTAGTACAGTTACAACGTCGCCAGGAGACAGAGCTAGAAGGACTGCTGGTACAGCACCGGGATCTCAAAGCTAATATGCGAGCATTAGAACTGGCCCATTGTGAGCTTCGTGGCCGgtatgtgttcttaattggagaaattctttattcactcaccttacttgctt Alignment from Exonerate_protein2genome GCTGAAAAGTCAATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAAGCTGGGGGTGCTAGAAGAGGAGGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCGGGACCATGAGGCCTTGGTGCAGCTGCAGCGACGGCAGGAGACGGAGCTGGAGGGACTGTTGGTGCGGCACCGAGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCCG actctataatgcatcaggttccttgtcatcccacatcaatttacccctagGCTGAAAAATCAATGATGGAGATGCAGGGTCAGAGGCTGCATAGGAAGCTAGGGGTATTAGAAGAGGATGTTCGTGCAGCAAGATGGGCTGAAGAGGAGACACGAGGGCAGCAGCAGGCTTTACTTCGTGACCATAAAGCCTTAGTACAGTTACAACGTCGCCAGGAGACAGAGCTAGAAGGACTGCTGGTACAGCACCGGGATCTCAAAGCTAATATGCGAGCATTAGAACTGGCCCATTGTGAGCTTCGTGGCCGgtatgtgttcttaattggagaaattctttattcactcaccttacttgctt Alignment from Exonerate_coding2genome GCTGAAAAGTCAATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAAGCTGGGGGTGCTAGAAGAGGAGGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCGGGACCATGAGGCCTTGGTGCAGCTGCAGCGACGGCAGGAGACGGAGCTGGAGGGACTGTTGGTGCGGCACCGAGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCCG actctataatgcatcaggttccttgtcatcccacatcaatttacccctagGCTGAAAAATCAATGATGGAGATGCAGGGTCAGAGGCTGCATAGGAAGCTAGGGGTATTAGAAGAGGATGTTCGTGCAGCAAGATGGGCTGAAGAGGAGACACGAGGGCAGCAGCAGGCTTTACTTCGTGACCATAAAGCCTTAGTACAGTTACAACGTCGCCAGGAGACAGAGCTAGAAGGACTGCTGGTACAGCACCGGGATCTCAAAGCTAATATGCGAGCATTAGAACTGGCCCATTGTGAGCTTCGTGGCCGgtatgtgttcttaattggagaaattctttattcactcaccttacttgctt Alignment from GeneWise GCTGAAAAGTCAATGATGGAGATGCAAGGTCAGGAGCTGCATAGGAAGCTGGGGGTGCTAGAAGAGGAGGTGCGGGCAGCAAGACGGGCCCAGGAGGAGACCCGAGGGCAGCAGCAGGCTCTGCTTCGGGACCATGAGGCCTTGGTGCAGCTGCAGCGACGGCAGGAGACGGAGCTGGAGGGACTGTTGGTGCGGCACCGAGATCTCAAGGCCAATATGCGAGCATTGGAGCTGGCCCACCGTGAGCTTCAGGGCCGGCAT-- actctataatgcatcaggttccttgtcatcccacatcaatttacccctagGCTGAAAAATCAATGATGGAGATGCAGGGTCAGAGGCTGCATAGGAAGCTAGGGGTATTAGAAGAGGATGTTCGTGCAGCAAGATGGGCTGAAGAGGAGACACGAGGGCAGCAGCAGGCTTTACTTCGTGACCATAAAGCCTTAGTACAGTTACAACGTCGCCAGGAGACAGAGCTAGAAGGACTGCTGGTACAGCACCGGGATCTCAAAGCTAATATGCGAGCATTAGAACTGGCCCATTGTGAGCTTCGTGGCCGGTATGTgttcttaattggagaaattctttattcactcaccttacttgctt #### Ccdc88b_ID1832_17 --> 0 - 0 Original Alignment CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGA---GCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT agattaatgtggagggtaacaaggtgtttgtgtggctctgtatcctatagCTACATCAGTGCCCTGTG---CTT---GAAGGTGCACGGCGAGATGGCCCTTGGGCTGCGGAGACACACAATGGGCAGCTTATTGTAGTAGAGCAAAATgtatgtaagaaggtgggggcctaccttagagctaatagggctcacaacat Alignment from CESAR CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT agattaatgtggagggtaacaaggtgtttgtgtggctctgtatcctatagCTACATCAGTGCCCTGTG---CTTGAAGGTGCACGGCGAGATGGCCCTTGGGCTGCGGAGACACACAATGGGCAGCTTATTGTAGTAGAGCAAAATgtatgtaagaaggtgggggcctaccttagagctaatagggctcacaacat Alignment from Spaln_aa2Genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT agattaatgtggagggtaacaaggtgtttgtgtggctctgtatcctatagCTACATCAGTGCCCTGTG---CTTGAAGGTGCACGGCGAGATGGCCCTTGGGCTGCGGAGACACACAATGGGCAGCTTATTGTAGTAGAGCAAAATgtatgtaagaaggtgggggcctaccttagagctaatagggctcacaacat Alignment from Spaln_nt2Genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT agattaatgtggagggtaacaaggtgtttgtgtggctctgtatcctatagCTACATCAGTGCCCTGTG---CTTGAAGGTGCACGGCGAGATGGCCCTTGGGCTGCGGAGACACACAATGGGCAGCTTATTGTAGTAGAGCAAAATgtatgtaagaaggtgggggcctaccttagagctaatagggctcacaacat Alignment from Pairagon CTGCGCCAGTACCC----------GGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT agattaatgtggagggtaacaaggtgtttgtgtggctctgtatcctatagCTACATCAGTGCCCTGTGCTTGAAGGTGCAC-------------GGCGAGATGGCCCTTGGGCTGCGGAGACACACAATGGGCAGCTTATTGTAGTAGAGCAAAATgtatgtaagaaggtgggggcctaccttagagctaatagggctcacaacat Alignment from Exonerate_protein2genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGG agattaatgtggagggtaacaaggtgtttgtgtggctctgtatcctatagctacatcagtgccctgtgcttgaaggtgcacggcgagatggcccttgggctgcggagacacacaatgggcagCTTATTGTAGTAGAGCAAAATGTATGTAAGAAGGTGGGGGCCTACCTTAGAGCTAATAGGGCTCACAACAT Alignment from Exonerate_coding2genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGG agattaatgtggagggtaacaaggtgtttgtgtggctctgtatcctatagctacatcagtgccctgtgcttgaaggtgcacggcgagatggcccttgggctgcggagacacacaatgggcagCTTATTGTAGTAGAGCAAAATGTATGTAAGAAGGTGGGGGCCTACCTTAGAGCTAATAGGGCTCACAACAT Alignment from GeneWise CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT-------------------------------------------------- agattaatgtggagggtaacaaggtgtttgtgtggctctgtatcctatagCTACATCAGTGCCCTGTG---CTTGAAGGTGCACGGCGAGATGGCCCTTGGGCTGCGGAGACACACAATGGGCAGCTTATTGTAGTAGAGCAAAATGTATGTAAGAAGGTGGGGGCCTACCTTAGAGCTAATAGGGCTCACAACAT #### Ccdc88b_ID1847_2 --> 0 - 2 Original Alignment GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCat ccctggtattgtgtgctcacttccctacctttgtactcactcgtcctcagGCTTTAGGTTTAGCTGGCCTTGTGGGGGATGCGGAAAAGTCAGCAGGTGGAACTGAAGAGGATGAAGAGGAAGAGGAGGAAGAAGGAGCCCTTTGTACAGAAAAAAGATCCCTACGGTCGATTGACGGAGCTTTACTTCTTCGGGTTTTGGAGATTatgtaagtgacacagtgaaatttaactatagatgtaggccaagaatgatggg Alignment from CESAR GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCat ccctggtattgtgtgctcacttccctacctttgtactcactcgtcctcagGCTTTAGGTTTAGCTGGCCTTGTGGGGGATGCGGAAAAGTCAGCAGGTGGAACTGAAGAGGATGAAGAGGAAGAGGAGGAAGAAGGAGCCCTTTGTACAGAAAAAAGATCCCTACGGTCGATTGACGGAGCTTTACTTCTTCGGGTTTTGGAGATTatgtaagtgacacagtgaaatttaactatagatgtaggccaagaatgatggg Alignment from Spaln_aa2Genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT ccctggtattgtgtgctcacttccctacctttgtactcactcgtcctcagGCTTTAGGTTTAGCTGGCCTTGTGGGGGATGCGGAAAAGTCAGCAGGTGGAACTGAAGAGGATGAAGAGGAAGAGGAGGAAGAAGGAGCCCTTTGTACAGAAAAAAGATCCCTACGGTCGATTGACGGAGCTTTACTTCTTCGGGTTTTGGAGATTATgtaagtgacacagtgaaatttaactatagatgtaggccaagaatgatggg Alignment from Spaln_nt2Genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT ccctggtattgtgtgctcacttccctacctttgtactcactcgtcctcagGCTTTAGGTTTAGCTGGCCTTGTGGGGGATGCGGAAAAGTCAGCAGGTGGAACTGAAGAGGATGAAGAGGAAGAGGAGGAAGAAGGAGCCCTTTGTACAGAAAAAAGATCCCTACGGTCGATTGACGGAGCTTTACTTCTTCGGGTTTTGGAGATTATgtaagtgacacagtgaaatttaactatagatgtaggccaagaatgatggg Alignment from Pairagon GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT ccctggtattgtgtgctcacttccctacctttgtactcactcgtcctcagGCTTTAGGTTTAGCTGGCCTTGTGGGGGATGCGGAAAAGTCAGCAGGTGGAACTGAAGAGGATGAAGAGGAAGAGGAGGAAGAAGGAGCCCTTTGTACAGAAAAAAGATCCCTACGGTCGATTGACGGAGCTTTACTTCTTCGGGTTTTGGAGATTATgtaagtgacacagtgaaatttaactatagatgtaggccaagaatgatggg Alignment from Exonerate_protein2genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT ccctggtattgtgtgctcacttccctacctttgtactcactcgtcctcagGCTTTAGGTTTAGCTGGCCTTGTGGGGGATGCGGAAAAGTCAGCAGGTGGAACTGAAGAGGATGAAGAGGAAGAGGAGGAAGAAGGAGCCCTTTGTACAGAAAAAAGATCCCTACGGTCGATTGACGGAGCTTTACTTCTTCGGGTTTTGGAGATTATgtaagtgacacagtgaaatttaactatagatgtaggccaagaatgatggg Alignment from Exonerate_coding2genome ccctggtattgtgtgctcacttccctacctttgtactcactcgtcctcaggctttaggtttagctggccttgtgggggatgcggaaaagtcagcaggtggaactgaagaggatgaagaggaagaggaggaagaaggagccctttgtacagaaaaaagatccctacggtcgattgacggagctttacttcttcgggttttggagattatgtaagtgacacagtgaaatttaactatagatgtaggccaagaatgatggg Alignment from GeneWise GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT ccctggtattgtgtgctcacttccctacctttgtactcactcgtcctcagGCTTTAGGTTTAGCTGGCCTTGTGGGGGATGCGGAAAAGTCAGCAGGTGGAACTGAAGAGGATGAAGAGGAAGAGGAGGAAGAAGGAGCCCTTTGTACAGAAAAAAGATCCCTACGGTCGATTGACGGAGCTTTACTTCTTCGGGTTTTGGAGATTATgtaagtgacacagtgaaatttaactatagatgtaggccaagaatgatggg #### Ccnj_ID8040_2 --> 0 - 1 Original Alignment GAGCTGAAGCTGCCTTCTTACAAGGGCCAATCTCCTCAGCTGAACCTCAGGCGGTATTTTGCTGATTTGATTGCCATTGTGAGCAATCGCTTCACCCTCTGCCCCCCTGCCCGCCATCTCGCCGTCTACCTGCTGGACCTGTTCATGGACCGCTATGACATCTCCATTCAGCAG---CTACACTTAGTTGCGCTTTCCTGTCTGCTTCTAGCAa gatactctgaattgtatcaatattgaactccatgatttctctatatgtagGAGCTTAAACTTCCCTCATACAGGGGCCAGTCTCCACAGCTGAATCTAATGTGCTATATTGCAGACCTGATTGCCATAGTGAGTAATCGCTTTACCCTCTGCCCCCCAGCCTGTCATCTTGCTGTCTACCTGTTGGATCTGTTCATGGACCGCTATGACATTTCCATTCGTCACCAACTGCACTTGATAGCACTATCTTGTCTTCTTTTAGCAagtgagtgtctgtttttattttcaggaaattgacatttctgtgttatctga Alignment from CESAR GAGCTGAAGCTGCCTTCTTACAAGGGCCAATCTCCTCAGCTGAACCTCAGGCGGTATTTTGCTGATTTGATTGCCATTGTGAGCAATCGCTTCACCCTCTGCCCCCCTGCCCGCCATCTCGCCGTCTACCTGCTGGACCTGTTCATGGACCGCTATGACATCTCCATT---CAGCAGCTACACTTAGTTGCGCTTTCCTGTCTGCTTCTAGCAa gatactctgaattgtatcaatattgaactccatgatttctctatatgtagGAGCTTAAACTTCCCTCATACAGGGGCCAGTCTCCACAGCTGAATCTAATGTGCTATATTGCAGACCTGATTGCCATAGTGAGTAATCGCTTTACCCTCTGCCCCCCAGCCTGTCATCTTGCTGTCTACCTGTTGGATCTGTTCATGGACCGCTATGACATTTCCATTCGTCACCAACTGCACTTGATAGCACTATCTTGTCTTCTTTTAGCAagtgagtgtctgtttttattttcaggaaattgacatttctgtgttatctga Alignment from Spaln_aa2Genome GAGCTGAAGCTGCCTTCTTACAAGGGCCAATCTCCTCAGCTGAACCTCAGGCGGTATTTTGCTGATTTGATTGCCATTGTGAGCAATCGCTTCACCCTCTGCCCCCCTGCCCGCCATCTCGCCGTCTACCTGCTGGACCTGTTCATGGACCGCTATGACATCTCCATT---CAGCAGCTACACTTAGTTGCGCTTTCCTGTCTGCTTCTAGCAA gatactctgaattgtatcaatattgaactccatgatttctctatatgtagGAGCTTAAACTTCCCTCATACAGGGGCCAGTCTCCACAGCTGAATCTAATGTGCTATATTGCAGACCTGATTGCCATAGTGAGTAATCGCTTTACCCTCTGCCCCCCAGCCTGTCATCTTGCTGTCTACCTGTTGGATCTGTTCATGGACCGCTATGACATTTCCATTCGTCACCAACTGCACTTGATAGCACTATCTTGTCTTCTTTTAGCAAgtgagtgtctgtttttattttcaggaaattgacatttctgtgttatctga Alignment from Spaln_nt2Genome GAGCTGAAGCTGCCTTCTTACAAGGGCCAATCTCCTCAGCTGAACCTCAGGCGGTATTTTGCTGATTTGATTGCCATTGTGAGCAATCGCTTCACCCTCTGCCCCCCTGCCCGCCATCTCGCCGTCTACCTGCTGGACCTGTTCATGGACCGCTATGACATCTCCATTC---AGCAGCTACACTTAGTTGCGCTTTCCTGTCTGCTTCTAGCAA gatactctgaattgtatcaatattgaactccatgatttctctatatgtagGAGCTTAAACTTCCCTCATACAGGGGCCAGTCTCCACAGCTGAATCTAATGTGCTATATTGCAGACCTGATTGCCATAGTGAGTAATCGCTTTACCCTCTGCCCCCCAGCCTGTCATCTTGCTGTCTACCTGTTGGATCTGTTCATGGACCGCTATGACATTTCCATTCGTCACCAACTGCACTTGATAGCACTATCTTGTCTTCTTTTAGCAAgtgagtgtctgtttttattttcaggaaattgacatttctgtgttatctga Alignment from Pairagon GAGCTGAAGCTGCCTTCTTACAAGGGCCAATCTCCTCAGCTGAACCTCAGGCGGTATTTTGCTGATTTGATTGCCATTGTGAGCAATCGCTTCACCCTCTGCCCCCCTGCCCGCCATCTCGCCGTCTACCTGCTGGACCTGTTCATGGACCGCTATGACATCTCCATT---CAGCAGCTACACTTAGTTGCGCTTTCCTGTCTGCTTCTAGCAA gatactctgaattgtatcaatattgaactccatgatttctctatatgtagGAGCTTAAACTTCCCTCATACAGGGGCCAGTCTCCACAGCTGAATCTAATGTGCTATATTGCAGACCTGATTGCCATAGTGAGTAATCGCTTTACCCTCTGCCCCCCAGCCTGTCATCTTGCTGTCTACCTGTTGGATCTGTTCATGGACCGCTATGACATTTCCATTCGTCACCAACTGCACTTGATAGCACTATCTTGTCTTCTTTTAGCAAgtgagtgtctgtttttattttcaggaaattgacatttctgtgttatctga Alignment from Exonerate_protein2genome GAGCTGAAGCTGCCTTCTTACAAGGGCCAATCTCCTCAGCTGAACCTCAGGCGGTATTTTGCTGATTTGATTGCCATTGTGAGCAATCGCTTCACCCTCTGCCCCCCTGCCCGCCATCTCGCCGTCTACCTGCTGGACCTGTTCATGGACCGCTATGACATCTCCATTCAG---CAGCTACACTTAGTTGCGCTTTCCTGTCTGCTTCTAGCAA gatactctgaattgtatcaatattgaactccatgatttctctatatgtagGAGCTTAAACTTCCCTCATACAGGGGCCAGTCTCCACAGCTGAATCTAATGTGCTATATTGCAGACCTGATTGCCATAGTGAGTAATCGCTTTACCCTCTGCCCCCCAGCCTGTCATCTTGCTGTCTACCTGTTGGATCTGTTCATGGACCGCTATGACATTTCCATTCGTCACCAACTGCACTTGATAGCACTATCTTGTCTTCTTTTAGCAAgtgagtgtctgtttttattttcaggaaattgacatttctgtgttatctga Alignment from Exonerate_coding2genome GAGCTGAAGCTGCCTTCTTACAAGGGCCAATCTCCTCAGCTGAACCTCAGGCGGTATTTTGCTGATTTGATTGCCATTGTGAGCAATCGCTTCACCCTCTGCCCCCCTGCCCGCCATCTCGCCGTCTACCTGCTGGACCTGTTCATGGACCGCTATGACATCTCCATTCAG---CAGCTACACTTAGTTGCGCTTTCCTGTCTGCTTCTAGCAA gatactctgaattgtatcaatattgaactccatgatttctctatatgtagGAGCTTAAACTTCCCTCATACAGGGGCCAGTCTCCACAGCTGAATCTAATGTGCTATATTGCAGACCTGATTGCCATAGTGAGTAATCGCTTTACCCTCTGCCCCCCAGCCTGTCATCTTGCTGTCTACCTGTTGGATCTGTTCATGGACCGCTATGACATTTCCATTCGTCACCAACTGCACTTGATAGCACTATCTTGTCTTCTTTTAGCAAgtgagtgtctgtttttattttcaggaaattgacatttctgtgttatctga Alignment from GeneWise GAGCTGAAGCTGCCTTCTTACAAGGGCCAATCTCCTCAGCTGAACCTCAGGCGGTATTTTGCTGATTTGATTGCCATTGTGAGCAATCGCTTCACCCTCTGCCCCCCTGCCCGCCATCTCGCCGTCTACCTGCTGGACCTGTTCATGGACCGCTATGACATCTCCATTCAG---CAGCTACACTTAGTTGCGCTTTCCTGTCTGCTTCTAGCAA gatactctgaattgtatcaatattgaactccatgatttctctatatgtagGAGCTTAAACTTCCCTCATACAGGGGCCAGTCTCCACAGCTGAATCTAATGTGCTATATTGCAGACCTGATTGCCATAGTGAGTAATCGCTTTACCCTCTGCCCCCCAGCCTGTCATCTTGCTGTCTACCTGTTGGATCTGTTCATGGACCGCTATGACATTTCCATTCGTCACCAACTGCACTTGATAGCACTATCTTGTCTTCTTTTAGCAAgtgagtgtctgtttttattttcaggaaattgacatttctgtgttatctga #### Ccs_ID664_4 --> 2 - 2 Original Alignment agAATCTGGGAGCAGCAGTGGCCATTCTGGAGGGCTGTGGCTCCATACAGGGGGTGGTCCGCTTCCTACAGCTATCCTCTGAACTCTGCTTGATTGAGGGAACCATCGACGGCCTAGAGCCTGGGCTGCATGGACTCCATGTGCATCAGTATGGGGACCTTACGAGGGACTGCAATag atgtcctggaattttaatgacactacatttgctttcctcaacactctcagaaAATCTTGGAGCAACTGTTGCCATTCTAGAGGGGTATGGCACAATACAGGGATTGGTCCGTTTTTTGCAACTATCCTCTGAACTATGCTTGATGGAGGGTACAATTGATGGCTTAGAT---GGACTGCATGGACTACAAGTGCATCACTACGGTGACCTATCACGTGACTGCAATaggtaagtagtctctgagaagtcatatagactcctggggctactcctcctgc Alignment from CESAR agAATCTGGGAGCAGCAGTGGCCATTCTGGAGGGCTGTGGCTCCATACAGGGGGTGGTCCGCTTCCTACAGCTATCCTCTGAACTCTGCTTGATTGAGGGAACCATCGACGGCCTAGAGCCTGGGCTGCATGGACTCCATGTGCATCAGTATGGGGACCTTACGAGGGACTGCAATag atgtcctggaattttaatgacactacatttgctttcctcaacactctcagaaAATCTTGGAGCAACTGTTGCCATTCTAGAGGGGTATGGCACAATACAGGGATTGGTCCGTTTTTTGCAACTATCCTCTGAACTATGCTTGATGGAGGGTACAATTGATGGCTTAGAT---GGACTGCATGGACTACAAGTGCATCACTACGGTGACCTATCACGTGACTGCAATaggtaagtagtctctgagaagtcatatagactcctggggctactcctcctgc Alignment from Spaln_aa2Genome AGAATCTGGGAGCAGCAGTGGCCATTCTGGAGGGCTGTGGCTCCATACAGGGGGTGGTCCGCTTCCTACAGCTATCCTCTGAACTCTGCTTGATTGAGGGAACCATCGACGGCCTAGAGCCTGGGCTGCATGGACTCCATGTGCATCAGTATGGGGACCTTACGAGGGACTGCAATAG atgtcctggaattttaatgacactacatttgctttcctcaacactctcagAAAATCTTGGAGCAACTGTTGCCATTCTAGAGGGGTATGGCACAATACAGGGATTGGTCCGTTTTTTGCAACTATCCTCTGAACTATGCTTGATGGAGGGTACAATTGATGGCTTAGAT---GGACTGCATGGACTACAAGTGCATCACTACGGTGACCTATCACGTGACTGCAATAGgtaagtagtctctgagaagtcatatagactcctggggctactcctcctgc Alignment from Spaln_nt2Genome AGAATCTGGGAGCAGCAGTGGCCATTCTGGAGGGCTGTGGCTCCATACAGGGGGTGGTCCGCTTCCTACAGCTATCCTCTGAACTCTGCTTGATTGAGGGAACCATCGACGGCCTAGAGCCTGGGCTGCATGGACTCCATGTGCATCAGTATGGGGACCTTACGAGGGACTGCAATAG atgtcctggaattttaatgacactacatttgctttcctcaacactctcagAAAATCTTGGAGCAACTGTTGCCATTCTAGAGGGGTATGGCACAATACAGGGATTGGTCCGTTTTTTGCAACTATCCTCTGAACTATGCTTGATGGAGGGTACAATTGATGGCTTAGA---TGGACTGCATGGACTACAAGTGCATCACTACGGTGACCTATCACGTGACTGCAATAGgtaagtagtctctgagaagtcatatagactcctggggctactcctcctgc Alignment from Pairagon AGAATCTGGGAGCAGCAGTGGCCATTCTGGAGGGCTGTGGCTCCATACAGGGGGTGGTCCGCTTCCTACAGCTATCCTCTGAACTCTGCTTGATTGAGGGAACCATCGACGGCCTAGAGCCTGGGCTGCATGGACTCCATGTGCATCAGTATGGGGACCTTACGAGGGACTGCAATAG atgtcctggaattttaatgacactacatttgctttcctcaacactctcagAAAATCTTGGAGCAACTGTTGCCATTCTAGAGGGGTATGGCACAATACAGGGATTGGTCCGTTTTTTGCAACTATCCTCTGAACTATGCTTGATGGAGGGTACAATTGATGGCTTAGA---TGGACTGCATGGACTACAAGTGCATCACTACGGTGACCTATCACGTGACTGCAATAGgtaagtagtctctgagaagtcatatagactcctggggctactcctcctgc Alignment from Exonerate_protein2genome AGAATCTGGGAGCAGCAGTGGCCATTCTGGAGGGCTGTGGCTCCATACAGGGGGTGGTCCGCTTCCTACAGCTATCCTCTGAACTCTGCTTGATTGAGGGAACCATCGACGGCCTAGAGCCTGGGCTGCATGGACTCCATGTGCATCAGTATGGGGACCTTACGAGGGACTGCAATAG atgtcctggaattttaatgacactacatttgctttcctcaacactctcagAAAATCTTGGAGCAACTGTTGCCATTCTAGAGGGGTATGGCACAATACAGGGATTGGTCCGTTTTTTGCAACTATCCTCTGAACTATGCTTGATGGAGGGTACAATTGATGGCTTAGAT---GGACTGCATGGACTACAAGTGCATCACTACGGTGACCTATCACGTGACTGCAATAGgtaagtagtctctgagaagtcatatagactcctggggctactcctcctgc Alignment from Exonerate_coding2genome AGAATCTGGGAGCAGCAGTGGCCATTCTGGAGGGCTGTGGCTCCATACAGGGGGTGGTCCGCTTCCTACAGCTATCCTCTGAACTCTGCTTGATTGAGGGAACCATCGACGGCCTAGAGCCTGGGCTGCATGGACTCCATGTGCATCAGTATGGGGACCTTACGAGGGACTGCAAT atgtcctggaattttaatgacactacatttgctttcctcaacactctcagAAAATCTTGGAGCAACTGTTGCCATTCTAGAGGGGTATGGCACAATACAGGGATTGGTCCGTTTTTTGCAACTATCCTCTGAACTATGCTTGATGGAGGGTACAATTGATGGCTTAGAT---GGACTGCATGGACTACAAGTGCATCACTACGGTGACCTATCACGTGACTGCAATaggtaagtagtctctgagaagtcatatagactcctggggctactcctcctgc Alignment from GeneWise AGAATCTGGGAGCAGCAGTGGCCATTCTGGAGGGCTGTGGCTCCATACAGGGGGTGGTCCGCTTCCTACAGCTATCCTCTGAACTCTGCTTGATTGAGGGAACCATCGACGGCCTAGAGCCTGGGCTGCATGGACTCCATGTGCATCAGTATGGGGACCTTACGAGGGACTGCAATAG atgtcctggaattttaatgacactacatttgctttcctcaacactctcagAAAATCTTGGAGCAACTGTTGCCATTCTAGAGGGGTATGGCACAATACAGGGATTGGTCCGTTTTTTGCAACTATCCTCTGAACTATGCTTGATGGAGGGTACAATTGATGGCTTAGAT---GGACTGCATGGACTACAAGTGCATCACTACGGTGACCTATCACGTGACTGCAATAGgtaagtagtctctgagaagtcatatagactcctggggctactcctcctgc #### Cd5_ID2989_9 --> 2 - 1 Original Alignment tgTCTTTCCATCGAAGCCACACAGCAACTGTGCGGTCCCAAGTTGAGAACCCAACAGCCTCTCATGTGGACAATGAATACAGCCAGCCTCCCAGGAACTCTCACCTGTCTGCTTATCCAg gagaacaagagcaaagcaaacacatatgcttttccaaaattccttttcagtgTCTTTT---CAGAGCCGCACAGCAACAGTACGGTCCCAAGTTGAAAATCCCACTACATCACATGTTGTTAATGAATATAGCCAGCCAACCAGGAACTCACACCTGTCTGCTTATCCAagtgggaaggtatgcagttgttggggtgatatcatgaccagtaacagcaca Alignment from CESAR tgTCTTTCCATCGAAGCCACACAGCAACTGTGCGGTCCCAAGTTGAGAACCCAACAGCCTCTCATGTGGACAATGAATACAGCCAGCCTCCCAGGAACTCTCACCTGTCTGCTTATCCAg gagaacaagagcaaagcaaacacatatgcttttccaaaattccttttcagtgTCTTTTCAG---AGCCGCACAGCAACAGTACGGTCCCAAGTTGAAAATCCCACTACATCACATGTTGTTAATGAATATAGCCAGCCAACCAGGAACTCACACCTGTCTGCTTATCCAagtgggaaggtatgcagttgttggggtgatatcatgaccagtaacagcaca Alignment from Spaln_aa2Genome TGTCTTTCCATCGAAGCCACACAGCAACTGTGCGGTCCCAAGTTGAGAACCCAACAGCCTCTCATGTGGACAATGAATACAGCCAGCCTCCCAGGAACTCTCACCTGTCTGCTTATCCAG gagaacaagagcaaagcaaacacatatgcttttccaaaattccttttcagTGTCTTTTCAG---AGCCGCACAGCAACAGTACGGTCCCAAGTTGAAAATCCCACTACATCACATGTTGTTAATGAATATAGCCAGCCAACCAGGAACTCACACCTGTCTGCTTATCCAAgtgggaaggtatgcagttgttggggtgatatcatgaccagtaacagcaca Alignment from Spaln_nt2Genome TGTCTTTCCATCGAAGCCACACAGCAACTGTGCGGTCCCAAGTTGAGAACCCAACAGCCTCTCATGTGGACAATGAATACAGCCAGCCTCCCAGGAACTCTCACCTGTCTGCTTATCCAG gagaacaagagcaaagcaaacacatatgcttttccaaaattccttttcagTGTCTTT---TCAGAGCCGCACAGCAACAGTACGGTCCCAAGTTGAAAATCCCACTACATCACATGTTGTTAATGAATATAGCCAGCCAACCAGGAACTCACACCTGTCTGCTTATCCAAgtgggaaggtatgcagttgttggggtgatatcatgaccagtaacagcaca Alignment from Pairagon TGTCTTTCCATCGAAGCCACACAGCAACTGTGCGGTCCCAAGTTGAGAACCCAACAGCCTCTCATGTGGACAATGAATACAGCCAGCCTCCCAGGAACTCTCACCTGTCTGCTTATCCAG gagaacaagagcaaagcaaacacatatgcttttccaaaattccttttcagTGTCTTTTCA---GAGCCGCACAGCAACAGTACGGTCCCAAGTTGAAAATCCCACTACATCACATGTTGTTAATGAATATAGCCAGCCAACCAGGAACTCACACCTGTCTGCTTATCCAAgtgggaaggtatgcagttgttggggtgatatcatgaccagtaacagcaca Alignment from Exonerate_protein2genome TGTCTTTCCATCGAAGCCACACAGCAACTGTGCGGTCCCAAGTTGAGAACCCAACAGCCTCTCATGTGGACAATGAATACAGCCAGCCTCCCAGGAACTCTCACCTGTCTGCTTATCCAG gagaacaagagcaaagcaaacacatatgcttttccaaaattccttttcagTGTCTTTT---CAGAGCCGCACAGCAACAGTACGGTCCCAAGTTGAAAATCCCACTACATCACATGTTGTTAATGAATATAGCCAGCCAACCAGGAACTCACACCTGTCTGCTTATCCAAgtgggaaggtatgcagttgttggggtgatatcatgaccagtaacagcaca Alignment from Exonerate_coding2genome TGTCTTTCCATCGAAGCCACACAGCAACTGTGCGGTCCCAAGTTGAGAACCCAACAGCCTCTCATGTGGACAATGAATACAGCCAGCCTCCCAGGAACTCTCACCTGTCTGCTTATCCAG gagaacaagagcaaagcaaacacatatgcttttccaaaattccttttcagTGTCTTTT---CAGAGCCGCACAGCAACAGTACGGTCCCAAGTTGAAAATCCCACTACATCACATGTTGTTAATGAATATAGCCAGCCAACCAGGAACTCACACCTGTCTGCTTATCCAAgtgggaaggtatgcagttgttggggtgatatcatgaccagtaacagcaca Alignment from GeneWise TGTCTTTCCATCGAAGCCACACAGCAACTGTGCGGTCCCAAGTTGAGAACCCAACAGCCTCTCATGTGGACAATGAATACAGCCAGCCTCCCAGGAACTCTCACCTGTCTGCTTATCCAG gagaacaagagcaaagcaaacacatatgcttttccaaaattccttttcagTGTCTTTT---CAGAGCCGCACAGCAACAGTACGGTCCCAAGTTGAAAATCCCACTACATCACATGTTGTTAATGAATATAGCCAGCCAACCAGGAACTCACACCTGTCTGCTTATCCAAgtgggaaggtatgcagttgttggggtgatatcatgaccagtaacagcaca #### Cd6_ID3015_9 --> 2 - 1 Original Alignment ctCCTATGCTGTTCATCCAGCCCCGGGTCCCTGCAGACTCGGACTCCAGTTCTGACTCCGACTATGAGCACTATGACTTCAGCTCCCAGCCACCTGTGGCCCTGACCACCTTCTACa aaataaacaattgtgcaaattcccccctcactgacccgcccctctcccagctCCTATGCTTTTTGTACAGCCCCAGGTCCCTGCTGACTCAGCCTCAAGTTCTGATTCAGACTATGAGCATTATGAGTTTAGCTACCAACCACCTGTGGCCCTGACCACCTTCTATagtaggcgttgcagagctacaactttgttaatatgtatccatctgtattgc Alignment from CESAR ctCCTATGCTGTTCATCCAGCCCCGGGTCCCTGCAGACTCGGACTCCAGTTCTGACTCCGACTATGAGCACTATGACTTCAGCTCCCAGCCACCTGTGGCCCTGACCACCTTCTACa aaataaacaattgtgcaaattcccccctcactgacccgcccctctcccagctCCTATGCTTTTTGTACAGCCCCAGGTCCCTGCTGACTCAGCCTCAAGTTCTGATTCAGACTATGAGCATTATGAGTTTAGCTACCAACCACCTGTGGCCCTGACCACCTTCTATagtaggcgttgcagagctacaactttgttaatatgtatccatctgtattgc Alignment from Spaln_aa2Genome CTCCTATGCTGTTCATCCAGCCCCGGGTCCCTGCAGACTCGGACTCCAGTTCTGACTCCGACTATGAGCACTATGACTTCAGCTCCCAGCCACCTGTGGCCCTGACCACCTTCTACA aaataaacaattgtgcaaattcccccctcactgacccgcccctctcccagCTCCTATGCTTTTTGTACAGCCCCAGGTCCCTGCTGACTCAGCCTCAAGTTCTGATTCAGACTATGAGCATTATGAGTTTAGCTACCAACCACCTGTGGCCCTGACCACCTTCTATAgtaggcgttgcagagctacaactttgttaatatgtatccatctgtattgc Alignment from Spaln_nt2Genome CTCCTATGCTGTTCATCCAGCCCCGGGTCCCTGCAGACTCGGACTCCAGTTCTGACTCCGACTATGAGCACTATGACTTCAGCTCCCAGCCACCTGTGGCCCTGACCACCTTCTACA aaataaacaattgtgcaaattcccccctcactgacccgcccctctcccagCTCCTATGCTTTTTGTACAGCCCCAGGTCCCTGCTGACTCAGCCTCAAGTTCTGATTCAGACTATGAGCATTATGAGTTTAGCTACCAACCACCTGTGGCCCTGACCACCTTCTATAgtaggcgttgcagagctacaactttgttaatatgtatccatctgtattgc Alignment from Pairagon CTCCTATGCTGTTCATCCAGCCCCGGGTCCCTGCAGACTCGGACTCCAGTTCTGACTCCGACTATGAGCACTATGACTTCAGCTCCCAGCCACCTGTGGCCCTGACCACCTTCTACA aaataaacaattgtgcaaattcccccctcactgacccgcccctctcccagCTCCTATGCTTTTTGTACAGCCCCAGGTCCCTGCTGACTCAGCCTCAAGTTCTGATTCAGACTATGAGCATTATGAGTTTAGCTACCAACCACCTGTGGCCCTGACCACCTTCTATAgtaggcgttgcagagctacaactttgttaatatgtatccatctgtattgc Alignment from Exonerate_protein2genome CTCCTATGCTGTTCATCCAGCCCCGGGTCCCTGCAGACTCGGACTCCAGTTCTGACTCCGACTATGAGCACTATGACTTCAGCTCCCAGCCACCTGTGGCCCTGACCACCTTCTACA aaataaacaattgtgcaaattcccccctcactgacccgcccctctcccagCTCCTATGCTTTTTGTACAGCCCCAGGTCCCTGCTGACTCAGCCTCAAGTTCTGATTCAGACTATGAGCATTATGAGTTTAGCTACCAACCACCTGTGGCCCTGACCACCTTCTATAgtaggcgttgcagagctacaactttgttaatatgtatccatctgtattgc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTCCTATGCTGTTCATCCAGCCCCGGGTCCCTGCAGACTCGGACTCCAGTTCTGACTCCGACTATGAGCACTATGACTTCAGCTCCCAGCCACCTGTGGCCCTGACCACCTTCTACA aaataaacaattgtgcaaattcccccctcactgacccgcccctctcccagCTCCTATGCTTTTTGTACAGCCCCAGGTCCCTGCTGACTCAGCCTCAAGTTCTGATTCAGACTATGAGCATTATGAGTTTAGCTACCAACCACCTGTGGCCCTGACCACCTTCTATAgtaggcgttgcagagctacaactttgttaatatgtatccatctgtattgc #### Cdc42bpg_ID1574_4 --> 0 - 0 Original Alignment ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG tacatgtttgcttgtatacagacaacctgttctttccctactccctgcagACAACCTGTCTCCGCGAGGAGCGAGATGTTCTAGTGAAGGAAGACCATTGTTGGGTGACAGTTTTACATTACTCATTCCAGGATGAGGAGTTCTTAgtaaaatgccctatgtcacaagggagccaccctgacagtactgtcttttt Alignment from CESAR ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG tacatgtttgcttgtatacagacaacctgttctttccctactccctgcagACAACCTGTCTCCGCGAGGAGCGAGATGTTCTAGTGAAGGAAGACCATTGTTGGGTGACAGTTTTACATTACTCATTCCAGGATGAGGAGTTCTTAgtaaaatgccctatgtcacaagggagccaccctgacagtactgtcttttt Alignment from Spaln_aa2Genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG tacatgtttgcttgtatacagacaacctgttctttccctactccctgcagACAACCTGTCTCCGCGAGGAGCGAGATGTTCTAGTGAAGGAAGACCATTGTTGGGTGACAGTTTTACATTACTCATTCCAGGATGAGGAGTTCTTAgtaaaatgccctatgtcacaagggagccaccctgacagtactgtcttttt Alignment from Spaln_nt2Genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG tacatgtttgcttgtatacagacaacctgttctttccctactccctgcagACAACCTGTCTCCGCGAGGAGCGAGATGTTCTAGTGAAGGAAGACCATTGTTGGGTGACAGTTTTACATTACTCATTCCAGGATGAGGAGTTCTTAgtaaaatgccctatgtcacaagggagccaccctgacagtactgtcttttt Alignment from Pairagon ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG tacatgtttgcttgtatacagacaacctgttctttccctactccctgcagACAACCTGTCTCCGCGAGGAGCGAGATGTTCTAGTGAAGGAAGACCATTGTTGGGTGACAGTTTTACATTACTCATTCCAGGATGAGGAGTTCTTAgtaaaatgccctatgtcacaagggagccaccctgacagtactgtcttttt Alignment from Exonerate_protein2genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG tacatgtttgcttgtatacagacaacctgttctttccctactccctgcagACAACCTGTCTCCGCGAGGAGCGAGATGTTCTAGTGAAGGAAGACCATTGTTGGGTGACAGTTTTACATTACTCATTCCAGGATGAGGAGTTCTTAgtaaaatgccctatgtcacaagggagccaccctgacagtactgtcttttt Alignment from Exonerate_coding2genome tacatgtttgcttgtatacagacaacctgttctttccctactccctgcagacaacctgtctccgcgaggagcgagatgttctagtgaaggaagaccattgttgggtgacagttttacattactcattccaggatgaggagttcttagtaaaatgccctatgtcacaagggagccaccctgacagtactgtcttttt Alignment from GeneWise ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG tacatgtttgcttgtatacagacaacctgttctttccctactccctgcagACAACCTGTCTCCGCGAGGAGCGAGATGTTCTAGTGAAGGAAGACCATTGTTGGGTGACAGTTTTACATTACTCATTCCAGGATGAGGAGTTCTTAgtaaaatgccctatgtcacaagggagccaccctgacagtactgtcttttt #### Cdc42bpg_ID1575_5 --> 0 - 2 Original Alignment TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTC---ACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGC------------TATGTCCACag tgcaatcagacttctggttggataactactgactgtctcctctacctcagTACCTGCTGATGGATTTTTATGCTGGTGGTGATCTTCTAAAAAGATTACTGAGCTGCTTTGAAGACCGTCTCCCGCCTGAACTAGCTCAAATATATTTGGCTGAGATGGTGTTGGCTATTCACTCCTTGCACCAGCTAGGCTATGCCCACAGCTATGCCCACaggtaactaagctagaggtgtgttgttgaggtattgggatcattccttctat Alignment from CESAR TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACG---CTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCAC------------ag tgcaatcagacttctggttggataactactgactgtctcctctacctcagTACCTGCTGATGGATTTTTATGCTGGTGGTGATCTTCTAAAAAGATTACTGAGCTGCTTTGAAGACCGTCTCCCGCCTGAACTAGCTCAAATATATTTGGCTGAGATGGTGTTGGCTATTCACTCCTTGCACCAGCTAGGCTATGCCCACAGCTATGCCCACaggtaactaagctagaggtgtgttgttgaggtattgggatcattccttctat Alignment from Spaln_aa2Genome TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACG---CTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGC------------TATGTCCACAG tgcaatcagacttctggttggataactactgactgtctcctctacctcagTACCTGCTGATGGATTTTTATGCTGGTGGTGATCTTCTAAAAAGATTACTGAGCTGCTTTGAAGACCGTCTCCCGCCTGAACTAGCTCAAATATATTTGGCTGAGATGGTGTTGGCTATTCACTCCTTGCACCAGCTAGGCTATGCCCACAGCTATGCCCACAGgtaactaagctagaggtgtgttgttgaggtattgggatcattccttctat Alignment from Spaln_nt2Genome TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGC---TGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACA tgcaatcagacttctggttggataactactgactgtctcctctacctcagTACCTGCTGATGGATTTTTATGCTGGTGGTGATCTTCTAAAAAGATTACTGAGCTGCTTTGAAGACCGTCTCCCGCCTGAACTAGCTCAAATATATTTGGCTGAGATGGTGTTGGCTATTCACTCCTTGCACCAGCTAGGCTATGCCCACAgctatgcccacaggtaactaagctagaggtgtgttgttgaggtattgggatcattccttctat Alignment from Pairagon TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCT---CACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAG------------ tgcaatcagacttctggttggataactactgactgtctcctctacctcagTACCTGCTGATGGATTTTTATGCTGGTGGTGATCTTCTAAAAAGATTACTGAGCTGCTTTGAAGACCGTCTCCCGCCTGAACTAGCTCAAATATATTTGGCTGAGATGGTGTTGGCTATTCACTCCTTGCACCAGCTAGGCTATGCCCACAGCTATGCCCACAGgtaactaagctagaggtgtgttgttgaggtattgggatcattccttctat Alignment from Exonerate_protein2genome TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTC---ACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAG tgcaatcagacttctggttggataactactgactgtctcctctacctcagTACCTGCTGATGGATTTTTATGCTGGTGGTGATCTTCTAAAAAGATTACTGAGCTGCTTTGAAGACCGTCTCCCGCCTGAACTAGCTCAAATATATTTGGCTGAGATGGTGTTGGCTATTCACTCCTTGCACCAGCTAGGCTATGCCCACAGctatgcccacaggtaactaagctagaggtgtgttgttgaggtattgggatcattccttctat Alignment from Exonerate_coding2genome tgcaatcagacttctggttggataactactgactgtctcctctacctcagtacctgctgatggatttttatgctggtggtgatcttctaaaaagattactgagctgctttgaagaccgtctcccgcctgaactagctcaaatatatttggctgagatggtgttggctattcactccttgcaccagctaggctatgcccacagctatgcccacaggtaactaagctagaggtgtgttgttgaggtattgggatcattccttctat Alignment from GeneWise TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTC---ACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCAC------------AG tgcaatcagacttctggttggataactactgactgtctcctctacctcagTACCTGCTGATGGATTTTTATGCTGGTGGTGATCTTCTAAAAAGATTACTGAGCTGCTTTGAAGACCGTCTCCCGCCTGAACTAGCTCAAATATATTTGGCTGAGATGGTGTTGGCTATTCACTCCTTGCACCAGCTAGGCTATGCCCACAGCTATGCCCACAGgtaactaagctagaggtgtgttgttgaggtattgggatcattccttctat #### Cdc42bpg_ID1576_6 --> 1 - 0 Original Alignment gGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG ggacacacacatacttacaccaaagaacgcttgtattgaacttgtcccagaGATGTGGAGCCAGACAATGTTCTA---AGCATGAATGGGCAT---TGCTTAGCTGATTTTGGCACCTGCCTATGCCTCAACATCAACACCAAGgtaagtaaaccacctagaaattcatagataagtataaagacatttagtta Alignment from CESAR gGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG ggacacacacatacttacaccaaagaacgcttgtattgaacttgtcccagaGATGTGGAGCCAGACAATGTT---CTAAGCATGAATGGGCAT---TGCTTAGCTGATTTTGGCACCTGCCTATGCCTCAACATCAACACCAAGgtaagtaaaccacctagaaattcatagataagtataaagacatttagtta Alignment from Spaln_aa2Genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG ggacacacacatacttacaccaaagaacgcttgtattgaacttgtcccagAGATGTGGAGCCAGACAATGTT---CTAAGCATGAATGGGCAT---TGCTTAGCTGATTTTGGCACCTGCCTATGCCTCAACATCAACACCAAGgtaagtaaaccacctagaaattcatagataagtataaagacatttagtta Alignment from Spaln_nt2Genome GGGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG ggacacacacatacttacaccaaagaacgcttgtattgaacttgtcccag-AGATGTGGAGCCAGACAA---TGTTCTAAGCATGAATGGGCA---TTGCTTAGCTGATTTTGGCACCTGCCTATGCCTCAACATCAACACCAAGgtaagtaaaccacctagaaattcatagataagtataaagacatttagtta Alignment from Pairagon GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTG--------------------------GCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG ggacacacacatacttacaccaaagaacgcttgtattgaacttgtcccagAGATGTGGAGCCAGACAA--------------------------------TGTTCTAAGCATGAATGGGCATTGCTTAGCTGATTTTGGCACCTGCCTATGCCTCAACATCAACACCAAGgtaagtaaaccacctagaaattcatagataagtataaagacatttagtta Alignment from Exonerate_protein2genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG ggacacacacatacttacaccaaagaacgcttgtattgaacttgtcccagAGATGTGGAGCCAGACAATGTT---CTAAGCATGAATGGGCATTGC---TTAGCTGATTTTGGCACCTGCCTATGCCTCAACATCAACACCAAGgtaagtaaaccacctagaaattcatagataagtataaagacatttagtta Alignment from Exonerate_coding2genome ggacacacacatacttacaccaaagaacgcttgtattgaacttgtcccagagatgtggagccagacaatgttctaagcatgaatgggcattgcttagctgattttggcacctgcctatgcctcaacatcaacaccaaggtaagtaaaccacctagaaattcatagataagtataaagacatttagtta Alignment from GeneWise GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG ggacacacacatacttacaccaaagaacgcttgtattgaacttgtcccagAGATGTGGAGCCAGACAATGTTCTA---AGCATGAATGGGCATTGC---TTAGCTGATTTTGGCACCTGCCTATGCCTCAACATCAACACCAAGgtaagtaaaccacctagaaattcatagataagtataaagacatttagtta #### Cdc42bpg_ID1578_8 --> 0 - 0 Original Alignment GACCACCTCCAGTTCCCTGCTGATGTGACTGATGTGCCTGCTAGTGCCCAGGACCTGATCCGACAGCTGCTGTGCCGTCAGGAGGAGCGGCTGGGCCGTGGTGGGCTGGACGACTTCCGGAAGCACCCCTTCTTTGAAGGGGTCGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAGCTTCGAGGGCCGATGGACACCTCCAACTTCGACGTGGATGATGATACCCTCAACCGTCCA ggtcatctttatagttaggtccctccatgtagctcattttgatgtcacagGACCATCTCCAGTTTCCTGCTGCCGTCACAGATGTGCCTGCTAGTGCCCGTGATCTGATCTGCCAGCTGTTATGCCGTCAAGAGGAGCAGCTAAGCCGTGGTGGACTGGATGACTTCCACAAGCATGCGTTCTTTGAGGGGGTAGACTGGGAGAGACTCACAACCAGCACAGCACCATACATCCCTGAGCTTCGAGGCCCAATGGACACTTCCAACTTTGATGTGGACGATGACACCCTCAACCGCTCAgtgagttgcagagactattaagacacatttgtccaaaaatgtactgagct Alignment from CESAR GACCACCTCCAGTTCCCTGCTGATGTGACTGATGTGCCTGCTAGTGCCCAGGACCTGATCCGACAGCTGCTGTGCCGTCAGGAGGAGCGGCTGGGCCGTGGTGGGCTGGACGACTTCCGGAAGCACCCCTTCTTTGAAGGGGTCGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAGCTTCGAGGGCCGATGGACACCTCCAACTTCGACGTGGATGATGATACCCTCAACCGTCCA ggtcatctttatagttaggtccctccatgtagctcattttgatgtcacagGACCATCTCCAGTTTCCTGCTGCCGTCACAGATGTGCCTGCTAGTGCCCGTGATCTGATCTGCCAGCTGTTATGCCGTCAAGAGGAGCAGCTAAGCCGTGGTGGACTGGATGACTTCCACAAGCATGCGTTCTTTGAGGGGGTAGACTGGGAGAGACTCACAACCAGCACAGCACCATACATCCCTGAGCTTCGAGGCCCAATGGACACTTCCAACTTTGATGTGGACGATGACACCCTCAACCGCTCAgtgagttgcagagactattaagacacatttgtccaaaaatgtactgagct Alignment from Spaln_aa2Genome GACCACCTCCAGTTCCCTGCTGATGTGACTGATGTGCCTGCTAGTGCCCAGGACCTGATCCGACAGCTGCTGTGCCGTCAGGAGGAGCGGCTGGGCCGTGGTGGGCTGGACGACTTCCGGAAGCACCCCTTCTTTGAAGGGGTCGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAGCTTCGAGGGCCGATGGACACCTCCAACTTCGACGTGGATGATGATACCCTCAACCGTCCA ggtcatctttatagttaggtccctccatgtagctcattttgatgtcacagGACCATCTCCAGTTTCCTGCTGCCGTCACAGATGTGCCTGCTAGTGCCCGTGATCTGATCTGCCAGCTGTTATGCCGTCAAGAGGAGCAGCTAAGCCGTGGTGGACTGGATGACTTCCACAAGCATGCGTTCTTTGAGGGGGTAGACTGGGAGAGACTCACAACCAGCACAGCACCATACATCCCTGAGCTTCGAGGCCCAATGGACACTTCCAACTTTGATGTGGACGATGACACCCTCAACCGCTCAgtgagttgcagagactattaagacacatttgtccaaaaatgtactgagct Alignment from Spaln_nt2Genome GACCACCTCCAGTTCCCTGCTGATGTGACTGATGTGCCTGCTAGTGCCCAGGACCTGATCCGACAGCTGCTGTGCCGTCAGGAGGAGCGGCTGGGCCGTGGTGGGCTGGACGACTTCCGGAAGCACCCCTTCTTTGAAGGGGTCGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAGCTTCGAGGGCCGATGGACACCTCCAACTTCGACGTGGATGATGATACCCTCAACCGTCCA ggtcatctttatagttaggtccctccatgtagctcattttgatgtcacagGACCATCTCCAGTTTCCTGCTGCCGTCACAGATGTGCCTGCTAGTGCCCGTGATCTGATCTGCCAGCTGTTATGCCGTCAAGAGGAGCAGCTAAGCCGTGGTGGACTGGATGACTTCCACAAGCATGCGTTCTTTGAGGGGGTAGACTGGGAGAGACTCACAACCAGCACAGCACCATACATCCCTGAGCTTCGAGGCCCAATGGACACTTCCAACTTTGATGTGGACGATGACACCCTCAACCGCTCAgtgagttgcagagactattaagacacatttgtccaaaaatgtactgagct Alignment from Pairagon GACCACCTCCAGTTCCCTGCTGATGTGACTGATGTGCCTGCTAGTGCCCAGGACCTGATCCGACAGCTGCTGTGCCGTCAGGAGGAGCGGCTGGGCCGTGGTGGGCTGGACGACTTCCGGAAGCACCCCTTCTTTGAAGGGGTCGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAGCTTCGAGGGCCGATGGACACCTCCAACTTCGACGTGGATGATGATACCCTCAACCGTCCA ggtcatctttatagttaggtccctccatgtagctcattttgatgtcacagGACCATCTCCAGTTTCCTGCTGCCGTCACAGATGTGCCTGCTAGTGCCCGTGATCTGATCTGCCAGCTGTTATGCCGTCAAGAGGAGCAGCTAAGCCGTGGTGGACTGGATGACTTCCACAAGCATGCGTTCTTTGAGGGGGTAGACTGGGAGAGACTCACAACCAGCACAGCACCATACATCCCTGAGCTTCGAGGCCCAATGGACACTTCCAACTTTGATGTGGACGATGACACCCTCAACCGCTCAgtgagttgcagagactattaagacacatttgtccaaaaatgtactgagct Alignment from Exonerate_protein2genome GACCACCTCCAGTTCCCTGCTGATGTGACTGATGTGCCTGCTAGTGCCCAGGACCTGATCCGACAGCTGCTGTGCCGTCAGGAGGAGCGGCTGGGCCGTGGTGGGCTGGACGACTTCCGGAAGCACCCCTTCTTTGAAGGGGTCGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAGCTTCGAGGGCCGATGGACACCTCCAACTTCGACGTGGATGATGATACCCTCAACCGTCCA ggtcatctttatagttaggtccctccatgtagctcattttgatgtcacagGACCATCTCCAGTTTCCTGCTGCCGTCACAGATGTGCCTGCTAGTGCCCGTGATCTGATCTGCCAGCTGTTATGCCGTCAAGAGGAGCAGCTAAGCCGTGGTGGACTGGATGACTTCCACAAGCATGCGTTCTTTGAGGGGGTAGACTGGGAGAGACTCACAACCAGCACAGCACCATACATCCCTGAGCTTCGAGGCCCAATGGACACTTCCAACTTTGATGTGGACGATGACACCCTCAACCGCTCAgtgagttgcagagactattaagacacatttgtccaaaaatgtactgagct Alignment from Exonerate_coding2genome ggtcatctttatagttaggtccctccatgtagctcattttgatgtcacaggaccatctccagtttcctgctgccgtcacagatgtgcctgctagtgcccgtgatctgatctgccagctgttatgccgtcaagaggagcagctaagccgtggtggactggatgacttccacaagcatgcgttctttgagggggtagactgggagagactcacaaccagcacagcaccatacatccctgagcttcgaggcccaatggacacttccaactttgatgtggacgatgacaccctcaaccgctcagtgagttgcagagactattaagacacatttgtccaaaaatgtactgagct Alignment from GeneWise GACCACCTCCAGTTCCCTGCTGATGTGACTGATGTGCCTGCTAGTGCCCAGGACCTGATCCGACAGCTGCTGTGCCGTCAGGAGGAGCGGCTGGGCCGTGGTGGGCTGGACGACTTCCGGAAGCACCCCTTCTTTGAAGGGGTCGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAGCTTCGAGGGCCGATGGACACCTCCAACTTCGACGTGGATGATGATACCCTCAACCGTCCA ggtcatctttatagttaggtccctccatgtagctcattttgatgtcacagGACCATCTCCAGTTTCCTGCTGCCGTCACAGATGTGCCTGCTAGTGCCCGTGATCTGATCTGCCAGCTGTTATGCCGTCAAGAGGAGCAGCTAAGCCGTGGTGGACTGGATGACTTCCACAAGCATGCGTTCTTTGAGGGGGTAGACTGGGAGAGACTCACAACCAGCACAGCACCATACATCCCTGAGCTTCGAGGCCCAATGGACACTTCCAACTTTGATGTGGACGATGACACCCTCAACCGCTCAgtgagttgcagagactattaagacacatttgtccaaaaatgtactgagct #### Cdc42bpg_ID1582_12 --> 2 - 0 Original Alignment agACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gcttgtgacgttttagggcaatgacggacctctctcctccttttcccaagaaACTTTGAAGGACAGTGAGGCTTCTCTTGCCCAAGCTGATGGGCCTGATGCTAGAAGCCCTGTCCCAAACATTCAGTTACAGCAGGAGAAGGATCGCCTTCAACAGgtatgaattgtgatgggaattatacagtgtgtcatttgtttatataagcc Alignment from CESAR agACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gcttgtgacgttttagggcaatgacggacctctctcctccttttcccaagaaACTTTGAAGGACAGTGAGGCTTCTCTTGCCCAAGCTGATGGGCCTGATGCTAGAAGCCCTGTCCCAAACATTCAGTTACAGCAGGAGAAGGATCGCCTTCAACAGgtatgaattgtgatgggaattatacagtgtgtcatttgtttatataagcc Alignment from Spaln_aa2Genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gcttgtgacgttttagggcaatgacggacctctctcctccttttcccaagAAACTTTGAAGGACAGTGAGGCTTCTCTTGCCCAAGCTGATGGGCCTGATGCTAGAAGCCCTGTCCCAAACATTCAGTTACAGCAGGAGAAGGATCGCCTTCAACAGgtatgaattgtgatgggaattatacagtgtgtcatttgtttatataagcc Alignment from Spaln_nt2Genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gcttgtgacgttttagggcaatgacggacctctctcctccttttcccaagAAACTTTGAAGGACAGTGAGGCTTCTCTTGCCCAAGCTGATGGGCCTGATGCTAGAAGCCCTGTCCCAAACATTCAGTTACAGCAGGAGAAGGATCGCCTTCAACAGgtatgaattgtgatgggaattatacagtgtgtcatttgtttatataagcc Alignment from Pairagon AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gcttgtgacgttttagggcaatgacggacctctctcctccttttcccaagAAACTTTGAAGGACAGTGAGGCTTCTCTTGCCCAAGCTGATGGGCCTGATGCTAGAAGCCCTGTCCCAAACATTCAGTTACAGCAGGAGAAGGATCGCCTTCAACAGgtatgaattgtgatgggaattatacagtgtgtcatttgtttatataagcc Alignment from Exonerate_protein2genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gcttgtgacgttttagggcaatgacggacctctctcctccttttcccaagAAACTTTGAAGGACAGTGAGGCTTCTCTTGCCCAAGCTGATGGGCCTGATGCTAGAAGCCCTGTCCCAAACATTCAGTTACAGCAGGAGAAGGATCGCCTTCAACAGgtatgaattgtgatgggaattatacagtgtgtcatttgtttatataagcc Alignment from Exonerate_coding2genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gcttgtgacgttttagggcaatgacggacctctctcctccttttcccaagAAACTTTGAAGGACAGTGAGGCTTCTCTTGCCCAAGCTGATGGGCCTGATGCTAGAAGCCCTGTCCCAAACATTCAGTTACAGCAGGAGAAGGATCGCCTTCAACAGgtatgaattgtgatgggaattatacagtgtgtcatttgtttatataagcc Alignment from GeneWise AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gcttgtgacgttttagggcaatgacggacctctctcctccttttcccaagAAACTTTGAAGGACAGTGAGGCTTCTCTTGCCCAAGCTGATGGGCCTGATGCTAGAAGCCCTGTCCCAAACATTCAGTTACAGCAGGAGAAGGATCGCCTTCAACAGgtatgaattgtgatgggaattatacagtgtgtcatttgtttatataagcc #### Cdc42bpg_ID1583_13 --> 0 - 0 Original Alignment GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCC---CTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG atcagacagcccatctgaattcattccacccccgccctttctcttttcagGAGCTGCCTCAGGCTCAGGTAGCACTGCAAGTGCAAGATGCTGAATTATGCCAAGCA---AACCGACAAGAAGAAGTCCTGCAGAGGTTGTGGGAAGCACAGGATAGGGAATCTGCTGCAGCAGGACAGCTTCAGAGCCTAATAAACACTCAGCTCCAAGAAGCATGGGTGGTCCGCAGAGAGgtaagtaaaaggcagcgacacttccatagatgtctttaaatccatgtagc Alignment from CESAR GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTG---AACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG atcagacagcccatctgaattcattccacccccgccctttctcttttcagGAGCTGCCTCAGGCTCAGGTAGCACTGCAAGTGCAAGATGCTGAATTATGCCAAGCA---AACCGACAAGAAGAAGTCCTGCAGAGGTTGTGGGAAGCACAGGATAGGGAATCTGCTGCAGCAGGACAGCTTCAGAGCCTAATAAACACTCAGCTCCAAGAAGCATGGGTGGTCCGCAGAGAGgtaagtaaaaggcagcgacacttccatagatgtctttaaatccatgtagc Alignment from Spaln_aa2Genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTG---AACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG atcagacagcccatctgaattcattccacccccgccctttctcttttcagGAGCTGCCTCAGGCTCAGGTAGCACTGCAAGTGCAAGATGCTGAATTATGCCAAGCA---AACCGACAAGAAGAAGTCCTGCAGAGGTTGTGGGAAGCACAGGATAGGGAATCTGCTGCAGCAGGACAGCTTCAGAGCCTAATAAACACTCAGCTCCAAGAAGCATGGGTGGTCCGCAGAGAGgtaagtaaaaggcagcgacacttccatagatgtctttaaatccatgtagc Alignment from Spaln_nt2Genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGA---ACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG atcagacagcccatctgaattcattccacccccgccctttctcttttcagGAGCTGCCTCAGGCTCAGGTAGCACTGCAAGTGCAAGATGCTGAATTATGCCAAGC---AAACCGACAAGAAGAAGTCCTGCAGAGGTTGTGGGAAGCACAGGATAGGGAATCTGCTGCAGCAGGACAGCTTCAGAGCCTAATAAACACTCAGCTCCAAGAAGCATGGGTGGTCCGCAGAGAGgtaagtaaaaggcagcgacacttccatagatgtctttaaatccatgtagc Alignment from Pairagon GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCC---TGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG atcagacagcccatctgaattcattccacccccgccctttctcttttcagGAGCTGCCTCAGGCTCAGGTAGCACTGCAAGTGCAAGATGCTGAATTATGCCAAGC---AAACCGACAAGAAGAAGTCCTGCAGAGGTTGTGGGAAGCACAGGATAGGGAATCTGCTGCAGCAGGACAGCTTCAGAGCCTAATAAACACTCAGCTCCAAGAAGCATGGGTGGTCCGCAGAGAGgtaagtaaaaggcagcgacacttccatagatgtctttaaatccatgtagc Alignment from Exonerate_protein2genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTG---AACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG atcagacagcccatctgaattcattccacccccgccctttctcttttcagGAGCTGCCTCAGGCTCAGGTAGCACTGCAAGTGCAAGATGCTGAATTATGCCAAGCA---AACCGACAAGAAGAAGTCCTGCAGAGGTTGTGGGAAGCACAGGATAGGGAATCTGCTGCAGCAGGACAGCTTCAGAGCCTAATAAACACTCAGCTCCAAGAAGCATGGGTGGTCCGCAGAGAGgtaagtaaaaggcagcgacacttccatagatgtctttaaatccatgtagc Alignment from Exonerate_coding2genome atcagacagcccatctgaattcattccacccccgccctttctcttttcaggagctgcctcaggctcaggtagcactgcaagtgcaagatgctgaattatgccaagcaaaccgacaagaagaagtcctgcagaggttgtgggaagcacaggatagggaatctgctgcagcaggacagcttcagagcctaataaacactcagctccaagaagcatgggtggtccgcagagaggtaagtaaaaggcagcgacacttccatagatgtctttaaatccatgtagc Alignment from GeneWise GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTG---AACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG atcagacagcccatctgaattcattccacccccgccctttctcttttcagGAGCTGCCTCAGGCTCAGGTAGCACTGCAAGTGCAAGATGCTGAATTATGCCAAGCA---AACCGACAAGAAGAAGTCCTGCAGAGGTTGTGGGAAGCACAGGATAGGGAATCTGCTGCAGCAGGACAGCTTCAGAGCCTAATAAACACTCAGCTCCAAGAAGCATGGGTGGTCCGCAGAGAGgtaagtaaaaggcagcgacacttccatagatgtctttaaatccatgtagc #### Cdc42bpg_ID1591_21 --> 2 - 0 Original Alignment atGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAG agtattacagcagggcagtggattcaagcaaggtttcttccttttgtcagatGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAGgtaagttggacatattaggtcaagcaagttacaacagctgaccataagca Alignment from CESAR atGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAG agtattacagcagggcagtggattcaagcaaggtttcttccttttgtcagatGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAGgtaagttggacatattaggtcaagcaagttacaacagctgaccataagca Alignment from Spaln_aa2Genome ATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAG agtattacagcagggcagtggattcaagcaaggtttcttccttttgtcagATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAGgtaagttggacatattaggtcaagcaagttacaacagctgaccataagca Alignment from Spaln_nt2Genome ATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAG agtattacagcagggcagtggattcaagcaaggtttcttccttttgtcagATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAGgtaagttggacatattaggtcaagcaagttacaacagctgaccataagca Alignment from Pairagon ATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAG agtattacagcagggcagtggattcaagcaaggtttcttccttttgtcagATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAGgtaagttggacatattaggtcaagcaagttacaacagctgaccataagca Alignment from Exonerate_protein2genome ATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAG agtattacagcagggcagtggattcaagcaaggtttcttccttttgtcagATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAGgtaagttggacatattaggtcaagcaagttacaacagctgaccataagca Alignment from Exonerate_coding2genome agtattacagcagggcagtggattcaagcaaggtttcttccttttgtcagatgccaggccttccacttccctcatccctctcctgtccttctggaacacagaggtaagttggacatattaggtcaagcaagttacaacagctgaccataagca Alignment from GeneWise ATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAG agtattacagcagggcagtggattcaagcaaggtttcttccttttgtcagATGCCAGGCCTTCCACTTCCCTCATCCCTCTCCTGTCCTTCTGGAACACAGAGgtaagttggacatattaggtcaagcaagttacaacagctgaccataagca #### Cdc42bpg_ID1592_22 --> 0 - 0 Original Alignment AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG taacacatacgtagtagctaagtttttctacctgcttttattttccttagAAAGACTTTGCTAAGGACCCAGGTAATTCAGCTGAGGGTCCAAAGTCTGGAGCAGAAGCAGAGCTTAGACCAGAGGGCCGGCGCAGTCTACGCATGGGTgtagggtcataaccaactagaatagaactacaggggatttctgcattgac Alignment from CESAR AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG taacacatacgtagtagctaagtttttctacctgcttttattttccttagAAAGACTTTGCTAAGGACCCAGGTAATTCAGCTGAGGGTCCAAAGTCTGGAGCAGAAGCAGAGCTTAGACCAGAGGGCCGGCGCAGTCTACGCATGGGTgtagggtcataaccaactagaatagaactacaggggatttctgcattgac Alignment from Spaln_aa2Genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG taacacatacgtagtagctaagtttttctacctgcttttattttccttagAAAGACTTTGCTAAGGACCCAGGTAATTCAGCTGAGGGTCCAAAGTCTGGAGCAGAAGCAGAGCTTAGACCAGAGGGCCGGCGCAGTCTACGCATGGGTgtagggtcataaccaactagaatagaactacaggggatttctgcattgac Alignment from Spaln_nt2Genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG taacacatacgtagtagctaagtttttctacctgcttttattttccttagAAAGACTTTGCTAAGGACCCAGGTAATTCAGCTGAGGGTCCAAAGTCTGGAGCAGAAGCAGAGCTTAGACCAGAGGGCCGGCGCAGTCTACGCATGGGTgtagggtcataaccaactagaatagaactacaggggatttctgcattgac Alignment from Pairagon AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG taacacatacgtagtagctaagtttttctacctgcttttattttccttagAAAGACTTTGCTAAGGACCCAGGTAATTCAGCTGAGGGTCCAAAGTCTGGAGCAGAAGCAGAGCTTAGACCAGAGGGCCGGCGCAGTCTACGCATGGGTgtagggtcataaccaactagaatagaactacaggggatttctgcattgac Alignment from Exonerate_protein2genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG taacacatacgtagtagctaagtttttctacctgcttttattttccttagAAAGACTTTGCTAAGGACCCAGGTAATTCAGCTGAGGGTCCAAAGTCTGGAGCAGAAGCAGAGCTTAGACCAGAGGGCCGGCGCAGTCTACGCATGGGTgtagggtcataaccaactagaatagaactacaggggatttctgcattgac Alignment from Exonerate_coding2genome taacacatacgtagtagctaagtttttctacctgcttttattttccttagaaagactttgctaaggacccaggtaattcagctgagggtccaaagtctggagcagaagcagagcttagaccagagggccggcgcagtctacgcatgggtgtagggtcataaccaactagaatagaactacaggggatttctgcattgac Alignment from GeneWise AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG taacacatacgtagtagctaagtttttctacctgcttttattttccttagAAAGACTTTGCTAAGGACCCAGGTAATTCAGCTGAGGGTCCAAAGTCTGGAGCAGAAGCAGAGCTTAGACCAGAGGGCCGGCGCAGTCTACGCATGGGTgtagggtcataaccaactagaatagaactacaggggatttctgcattgac #### Cdc42bpg_ID1593_23 --> 0 - 0 Original Alignment AGTGTGTTCCCCAGGGTGCCCGCAGCCACCACCACCCCTGCCGAAGGTCCTCCTGCTAAG tacaggggatttctgcattgacaattcactttttcccccctaccccacagTGCGTGTTCCCACGTGTGCATGCACCCACCACCACCCCCGCCAAAGGTCCACCTGCTAAGgtgagggtccagagtggtctgagcactcaagtgatagatcacagccatta Alignment from CESAR AGTGTGTTCCCCAGGGTGCCCGCAGCCACCACCACCCCTGCCGAAGGTCCTCCTGCTAAG tacaggggatttctgcattgacaattcactttttcccccctaccccacagTGCGTGTTCCCACGTGTGCATGCACCCACCACCACCCCCGCCAAAGGTCCACCTGCTAAGgtgagggtccagagtggtctgagcactcaagtgatagatcacagccatta Alignment from Spaln_aa2Genome AGTGTGTTCCCCAGGGTGCCCGCAGCCACCACCACCCCTGCCGAAGGTCCTCCTGCTAAG tacaggggatttctgcattgacaattcactttttcccccctaccccacagTGCGTGTTCCCACGTGTGCATGCACCCACCACCACCCCCGCCAAAGGTCCACCTGCTAAGgtgagggtccagagtggtctgagcactcaagtgatagatcacagccatta Alignment from Spaln_nt2Genome AGTGTGTTCCCCAGGGTGCCCGCAGCCACCACCACCCCTGCCGAAGGTCCTCCTGCTAAG tacaggggatttctgcattgacaattcactttttcccccctaccccacagTGCGTGTTCCCACGTGTGCATGCACCCACCACCACCCCCGCCAAAGGTCCACCTGCTAAGgtgagggtccagagtggtctgagcactcaagtgatagatcacagccatta Alignment from Pairagon AGTGTGTTCCCCAGGGTGCCCGCAGCCACCACCACCCCTGCCGAAGGTCCTCCTGCTAAG tacaggggatttctgcattgacaattcactttttcccccctaccccacagTGCGTGTTCCCACGTGTGCATGCACCCACCACCACCCCCGCCAAAGGTCCACCTGCTAAGgtgagggtccagagtggtctgagcactcaagtgatagatcacagccatta Alignment from Exonerate_protein2genome AGTGTGTTCCCCAGGGTGCCCGCAGCCACCACCACCCCTGCCGAAGGTCCTCCTGCTAAG tacaggggatttctgcattgacaattcactttttcccccctaccccacagTGCGTGTTCCCACGTGTGCATGCACCCACCACCACCCCCGCCAAAGGTCCACCTGCTAAGgtgagggtccagagtggtctgagcactcaagtgatagatcacagccatta Alignment from Exonerate_coding2genome GTGTTCCCCAGGGTGCCCGCAGCCACCACCACCCCTGCCGAAGGTCCTCCTGCTAAG tacaggggatttctgcattgacaattcactttttcccccctaccccacagtgcGTGTTCCCACGTGTGCATGCACCCACCACCACCCCCGCCAAAGGTCCACCTGCTAAGgtgagggtccagagtggtctgagcactcaagtgatagatcacagccatta Alignment from GeneWise AGTGTGTTCCCCAGGGTGCCCGCAGCCACCACCACCCCTGCCGAAGGTCCTCCTGCTAAG tacaggggatttctgcattgacaattcactttttcccccctaccccacagTGCGTGTTCCCACGTGTGCATGCACCCACCACCACCCCCGCCAAAGGTCCACCTGCTAAGgtgagggtccagagtggtctgagcactcaagtgatagatcacagccatta #### Cdc42bpg_ID1594_24 --> 0 - 1 Original Alignment CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACa agacagttcttccaagtcaagagctttgcttcatgattttgtacttatagCCTGGCTCACACACCTTGAGACCTCGCAGTTTTCCATCTCCAACAAAGTGTCTCCGCTGCACTTCGCTGATGTTGGGCCTTGGCCGCCAGGGCCTGGGCTGTGACagtgagcgcatatgtattgtagtcttccctcattgtttagcatatacatgc Alignment from CESAR CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACa agacagttcttccaagtcaagagctttgcttcatgattttgtacttatagCCTGGCTCACACACCTTGAGACCTCGCAGTTTTCCATCTCCAACAAAGTGTCTCCGCTGCACTTCGCTGATGTTGGGCCTTGGCCGCCAGGGCCTGGGCTGTGACagtgagcgcatatgtattgtagtcttccctcattgtttagcatatacatgc Alignment from Spaln_aa2Genome CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA agacagttcttccaagtcaagagctttgcttcatgattttgtacttatagCCTGGCTCACACACCTTGAGACCTCGCAGTTTTCCATCTCCAACAAAGTGTCTCCGCTGCACTTCGCTGATGTTGGGCCTTGGCCGCCAGGGCCTGGGCTGTGACAgtgagcgcatatgtattgtagtcttccctcattgtttagcatatacatgc Alignment from Spaln_nt2Genome CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA agacagttcttccaagtcaagagctttgcttcatgattttgtacttatagCCTGGCTCACACACCTTGAGACCTCGCAGTTTTCCATCTCCAACAAAGTGTCTCCGCTGCACTTCGCTGATGTTGGGCCTTGGCCGCCAGGGCCTGGGCTGTGACAgtgagcgcatatgtattgtagtcttccctcattgtttagcatatacatgc Alignment from Pairagon CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA agacagttcttccaagtcaagagctttgcttcatgattttgtacttatagCCTGGCTCACACACCTTGAGACCTCGCAGTTTTCCATCTCCAACAAAGTGTCTCCGCTGCACTTCGCTGATGTTGGGCCTTGGCCGCCAGGGCCTGGGCTGTGACAgtgagcgcatatgtattgtagtcttccctcattgtttagcatatacatgc Alignment from Exonerate_protein2genome CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA agacagttcttccaagtcaagagctttgcttcatgattttgtacttatagCCTGGCTCACACACCTTGAGACCTCGCAGTTTTCCATCTCCAACAAAGTGTCTCCGCTGCACTTCGCTGATGTTGGGCCTTGGCCGCCAGGGCCTGGGCTGTGACAgtgagcgcatatgtattgtagtcttccctcattgtttagcatatacatgc Alignment from Exonerate_coding2genome CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA agacagttcttccaagtcaagagctttgcttcatgattttgtacttatagCCTGGCTCACACACCTTGAGACCTCGCAGTTTTCCATCTCCAACAAAGTGTCTCCGCTGCACTTCGCTGATGTTGGGCCTTGGCCGCCAGGGCCTGGGCTGTGACAgtgagcgcatatgtattgtagtcttccctcattgtttagcatatacatgc Alignment from GeneWise CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA agacagttcttccaagtcaagagctttgcttcatgattttgtacttatagCCTGGCTCACACACCTTGAGACCTCGCAGTTTTCCATCTCCAACAAAGTGTCTCCGCTGCACTTCGCTGATGTTGGGCCTTGGCCGCCAGGGCCTGGGCTGTGACAgtgagcgcatatgtattgtagtcttccctcattgtttagcatatacatgc #### Cdc42bpg_ID1597_27 --> 1 - 0 Original Alignment gGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG actgatgcgtgaacaaccaacatggatccatgggatcttctctggctcaggGATCCCCAGTTTTCAGTGACCCCTGACTTGGCCCCAGATGTCATTCATGCCCAATCAAAGGACCTGCCACGCATCTTCAGGgtaaaaaaactaggtgatataggatttagcctccacaggctccggccagc Alignment from CESAR gGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG actgatgcgtgaacaaccaacatggatccatgggatcttctctggctcaggGATCCCCAGTTTTCAGTGACCCCTGACTTGGCCCCAGATGTCATTCATGCCCAATCAAAGGACCTGCCACGCATCTTCAGGgtaaaaaaactaggtgatataggatttagcctccacaggctccggccagc Alignment from Spaln_aa2Genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG actgatgcgtgaacaaccaacatggatccatgggatcttctctggctcagGGATCCCCAGTTTTCAGTGACCCCTGACTTGGCCCCAGATGTCATTCATGCCCAATCAAAGGACCTGCCACGCATCTTCAGGgtaaaaaaactaggtgatataggatttagcctccacaggctccggccagc Alignment from Spaln_nt2Genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG actgatgcgtgaacaaccaacatggatccatgggatcttctctggctcagGGATCCCCAGTTTTCAGTGACCCCTGACTTGGCCCCAGATGTCATTCATGCCCAATCAAAGGACCTGCCACGCATCTTCAGGgtaaaaaaactaggtgatataggatttagcctccacaggctccggccagc Alignment from Pairagon GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG actgatgcgtgaacaaccaacatggatccatgggatcttctctggctcagGGATCCCCAGTTTTCAGTGACCCCTGACTTGGCCCCAGATGTCATTCATGCCCAATCAAAGGACCTGCCACGCATCTTCAGGgtaaaaaaactaggtgatataggatttagcctccacaggctccggccagc Alignment from Exonerate_protein2genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG actgatgcgtgaacaaccaacatggatccatgggatcttctctggctcagGGATCCCCAGTTTTCAGTGACCCCTGACTTGGCCCCAGATGTCATTCATGCCCAATCAAAGGACCTGCCACGCATCTTCAGGgtaaaaaaactaggtgatataggatttagcctccacaggctccggccagc Alignment from Exonerate_coding2genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG actgatgcgtgaacaaccaacatggatccatgggatcttctctggctcagGGATCCCCAGTTTTCAGTGACCCCTGACTTGGCCCCAGATGTCATTCATGCCCAATCAAAGGACCTGCCACGCATCTTCAGGgtaaaaaaactaggtgatataggatttagcctccacaggctccggccagc Alignment from GeneWise GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG actgatgcgtgaacaaccaacatggatccatgggatcttctctggctcagGGATCCCCAGTTTTCAGTGACCCCTGACTTGGCCCCAGATGTCATTCATGCCCAATCAAAGGACCTGCCACGCATCTTCAGGgtaaaaaaactaggtgatataggatttagcctccacaggctccggccagc #### Cdca5_ID1429_3 --> 0 - 0 Original Alignment ACAACTCCAGCGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG cactatcttacaactcccagacaacaccaggtcctcaccccactctgtagATGACTCCCACTGTCCCAGTTAGAAAAGCCATCATCTTGAAAAAGATAGTTGCACATGCAGTCGAAgtgagtggggcagaattggccactgagatgtccaaaaaggttcaagctaa Alignment from CESAR ACAACTCCAGCGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG cactatcttacaactcccagacaacaccaggtcctcaccccactctgtagATGACTCCCACTGTCCCAGTTAGAAAAGCCATCATCTTGAAAAAGATAGTTGCACATGCAGTCGAAgtgagtggggcagaattggccactgagatgtccaaaaaggttcaagctaa Alignment from Spaln_aa2Genome ACAACTCCAGCGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG cactatcttacaactcccagacaacaccaggtcctcaccccactctgtagATGACTCCCACTGTCCCAGTTAGAAAAGCCATCATCTTGAAAAAGATAGTTGCACATGCAGTCGAAgtgagtggggcagaattggccactgagatgtccaaaaaggttcaagctaa Alignment from Spaln_nt2Genome ACAACTCCAGCGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG cactatcttacaactcccagacaacaccaggtcctcaccccactctgtagATGACTCCCACTGTCCCAGTTAGAAAAGCCATCATCTTGAAAAAGATAGTTGCACATGCAGTCGAAgtgagtggggcagaattggccactgagatgtccaaaaaggttcaagctaa Alignment from Pairagon ACAACTCCAG------------------------------CGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG cactatcttacaactcccagACAACACCAGGTCCTCACCCCACTCTGTAGATGACTCCCACTGTCCCAGTTAGAAAAGCCATCATCTTGAAAAAGATAGTTGCACATGCAGTCGAAgtgagtggggcagaattggccactgagatgtccaaaaaggttcaagctaa Alignment from Exonerate_protein2genome ACTCCAGCGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG cactatcttacaactcccagacaacaccaggtcctcaccccactctgtagatgACTCCCACTGTCCCAGTTAGAAAAGCCATCATCTTGAAAAAGATAGTTGCACATGCAGTCGAAgtgagtggggcagaattggccactgagatgtccaaaaaggttcaagctaa Alignment from Exonerate_coding2genome cactatcttacaactcccagacaacaccaggtcctcaccccactctgtagatgactcccactgtcccagttagaaaagccatcatcttgaaaaagatagttgcacatgcagtcgaagtgagtggggcagaattggccactgagatgtccaaaaaggttcaagctaa Alignment from GeneWise ACAACTCCAGCGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG cactatcttacaactcccagacaacaccaggtcctcaccccactctgtagATGACTCCCACTGTCCCAGTTAGAAAAGCCATCATCTTGAAAAAGATAGTTGCACATGCAGTCGAAgtgagtggggcagaattggccactgagatgtccaaaaaggttcaagctaa #### Cdca5_ID1431_5 --> 0 - 0 Original Alignment ATCTCTTTTATTTTGGAAAAAGAGAACAACCCTCCGCTCAAGGTACCCACGAAAGAAGACCTCTTCAAGACTTGTAGTGTCCCTGGTACTCCCTCCAGCACCCCCGTGCTGTACACTCAGAATGTTGAGCCTGACTCTGGAGAAGCAGAGCTGGACAGCAGAGACCTGGAAATGTCTCAGAAAGTCAGGCGGTCGTACAGTCGGCTACAGAGCCTTGGTTGTGCCTCAACCTCCACCCCTGGCCGCCGATCCTTCTTTGGCTTTGAGGGACCTGACGACTTGCCTGGAGTCTCACCTGTCGTGTGTTCAAAGTTAATCGAGACCCCAAAGGTACCTGCAAAGGACTTGGTTCCGGCTAGAACGAAGGACTTGGTTCCAGATAGTACGAAGGACTTGGTTCCGGCTAGAACGCTCCCTGGAATCTCTCCCCCAGTTGTGAAAGAGAAACGAAAGAAGAAGGTTCCTGAAATCCTG cattttcacctgcagtatgtggccctaaccctgtgttctgtctcctctagATCTCACTGACTCTTGAAAAAGAAAATAACCCACCACTCAAGGTTTCCACAAAAGTAGACCTTTATAGGACTTGCAGTATTCCAGGTACTCCCTCCAGCACTCCTGTACACTATACTGAGAATGTAGAGCCAGACTCAGGTGACGCAGAGCTTGACAGTAGAGACTTGGCAATGTCTCAGAAAGTCCGTTGGTCATGCAGTTGGCTCCATAGCTTTAGTTGTGCGTCCACTGCAACACCAGGCCGCAGATCTTTCTTTGGTTTTGAGGGCCCAGATGACTTGCCTGGAGACTCACAGTTGGTGTGCTCAGAGTTGATTAAGAAACCAAAGGTACCGGCAAAAGATTTGGTCCGAGCCCGAACAAAGGATTTAGTTCCAGACAGTAAAAAGGACTTAGTCCCTGCCCGGACACTCCCTGGAAATGCTCCACCAGTTGTGAAGGAGATATGGAAGAAGAAGGTTCCGGAAATATTGgtgaggaggactaaactagctgctttgccagttggaacatctacttaatt Alignment from CESAR ATCTCTTTTATTTTGGAAAAAGAGAACAACCCTCCGCTCAAGGTACCCACGAAAGAAGACCTCTTCAAGACTTGTAGTGTCCCTGGTACTCCCTCCAGCACCCCCGTGCTGTACACTCAGAATGTTGAGCCTGACTCTGGAGAAGCAGAGCTGGACAGCAGAGACCTGGAAATGTCTCAGAAAGTCAGGCGGTCGTACAGTCGGCTACAGAGCCTTGGTTGTGCCTCAACCTCCACCCCTGGCCGCCGATCCTTCTTTGGCTTTGAGGGACCTGACGACTTGCCTGGAGTCTCACCTGTCGTGTGTTCAAAGTTAATCGAGACCCCAAAGGTACCTGCAAAGGACTTGGTTCCGGCTAGAACGAAGGACTTGGTTCCAGATAGTACGAAGGACTTGGTTCCGGCTAGAACGCTCCCTGGAATCTCTCCCCCAGTTGTGAAAGAGAAACGAAAGAAGAAGGTTCCTGAAATCCTG cattttcacctgcagtatgtggccctaaccctgtgttctgtctcctctagATCTCACTGACTCTTGAAAAAGAAAATAACCCACCACTCAAGGTTTCCACAAAAGTAGACCTTTATAGGACTTGCAGTATTCCAGGTACTCCCTCCAGCACTCCTGTACACTATACTGAGAATGTAGAGCCAGACTCAGGTGACGCAGAGCTTGACAGTAGAGACTTGGCAATGTCTCAGAAAGTCCGTTGGTCATGCAGTTGGCTCCATAGCTTTAGTTGTGCGTCCACTGCAACACCAGGCCGCAGATCTTTCTTTGGTTTTGAGGGCCCAGATGACTTGCCTGGAGACTCACAGTTGGTGTGCTCAGAGTTGATTAAGAAACCAAAGGTACCGGCAAAAGATTTGGTCCGAGCCCGAACAAAGGATTTAGTTCCAGACAGTAAAAAGGACTTAGTCCCTGCCCGGACACTCCCTGGAAATGCTCCACCAGTTGTGAAGGAGATATGGAAGAAGAAGGTTCCGGAAATATTGgtgaggaggactaaactagctgctttgccagttggaacatctacttaatt Alignment from Spaln_aa2Genome ATCTCTTTTATTTTGGAAAAAGAGAACAACCCTCCGCTCAAGGTACCCACGAAAGAAGACCTCTTCAAGACTTGTAGTGTCCCTGGTACTCCCTCCAGCACCCCCGTGCTGTACACTCAGAATGTTGAGCCTGACTCTGGAGAAGCAGAGCTGGACAGCAGAGACCTGGAAATGTCTCAGAAAGTCAGGCGGTCGTACAGTCGGCTACAGAGCCTTGGTTGTGCCTCAACCTCCACCCCTGGCCGCCGATCCTTCTTTGGCTTTGAGGGACCTGACGACTTGCCTGGAGTCTCACCTGTCGTGTGTTCAAAGTTAATCGAGACCCCAAAGGTACCTGCAAAGGACTTGGTTCCGGCTAGAACGAAGGACTTGGTTCCAGATAGTACGAAGGACTTGGTTCCGGCTAGAACGCTCCCTGGAATCTCTCCCCCAGTTGTGAAAGAGAAACGAAAGAAGAAGGTTCCTGAAATCCTG cattttcacctgcagtatgtggccctaaccctgtgttctgtctcctctagATCTCACTGACTCTTGAAAAAGAAAATAACCCACCACTCAAGGTTTCCACAAAAGTAGACCTTTATAGGACTTGCAGTATTCCAGGTACTCCCTCCAGCACTCCTGTACACTATACTGAGAATGTAGAGCCAGACTCAGGTGACGCAGAGCTTGACAGTAGAGACTTGGCAATGTCTCAGAAAGTCCGTTGGTCATGCAGTTGGCTCCATAGCTTTAGTTGTGCGTCCACTGCAACACCAGGCCGCAGATCTTTCTTTGGTTTTGAGGGCCCAGATGACTTGCCTGGAGACTCACAGTTGGTGTGCTCAGAGTTGATTAAGAAACCAAAGGTACCGGCAAAAGATTTGGTCCGAGCCCGAACAAAGGATTTAGTTCCAGACAGTAAAAAGGACTTAGTCCCTGCCCGGACACTCCCTGGAAATGCTCCACCAGTTGTGAAGGAGATATGGAAGAAGAAGGTTCCGGAAATATTGgtgaggaggactaaactagctgctttgccagttggaacatctacttaatt Alignment from Spaln_nt2Genome ATCTCTTTTATTTTGGAAAAAGAGAACAACCCTCCGCTCAAGGTACCCACGAAAGAAGACCTCTTCAAGACTTGTAGTGTCCCTGGTACTCCCTCCAGCACCCCCGTGCTGTACACTCAGAATGTTGAGCCTGACTCTGGAGAAGCAGAGCTGGACAGCAGAGACCTGGAAATGTCTCAGAAAGTCAGGCGGTCGTACAGTCGGCTACAGAGCCTTGGTTGTGCCTCAACCTCCACCCCTGGCCGCCGATCCTTCTTTGGCTTTGAGGGACCTGACGACTTGCCTGGAGTCTCACCTGTCGTGTGTTCAAAGTTAATCGAGACCCCAAAGGTACCTGCAAAGGACTTGGTTCCGGCTAGAACGAAGGACTTGGTTCCAGATAGTACGAAGGACTTGGTTCCGGCTAGAACGCTCCCTGGAATCTCTCCCCCAGTTGTGAAAGAGAAACGAAAGAAGAAGGTTCCTGAAATCCTG cattttcacctgcagtatgtggccctaaccctgtgttctgtctcctctagATCTCACTGACTCTTGAAAAAGAAAATAACCCACCACTCAAGGTTTCCACAAAAGTAGACCTTTATAGGACTTGCAGTATTCCAGGTACTCCCTCCAGCACTCCTGTACACTATACTGAGAATGTAGAGCCAGACTCAGGTGACGCAGAGCTTGACAGTAGAGACTTGGCAATGTCTCAGAAAGTCCGTTGGTCATGCAGTTGGCTCCATAGCTTTAGTTGTGCGTCCACTGCAACACCAGGCCGCAGATCTTTCTTTGGTTTTGAGGGCCCAGATGACTTGCCTGGAGACTCACAGTTGGTGTGCTCAGAGTTGATTAAGAAACCAAAGGTACCGGCAAAAGATTTGGTCCGAGCCCGAACAAAGGATTTAGTTCCAGACAGTAAAAAGGACTTAGTCCCTGCCCGGACACTCCCTGGAAATGCTCCACCAGTTGTGAAGGAGATATGGAAGAAGAAGGTTCCGGAAATATTGgtgaggaggactaaactagctgctttgccagttggaacatctacttaatt Alignment from Pairagon ATCTCTTTTATTTTGGAAAAAGAGAACAACCCTCCGCTCAAGGTACCCACGAAAGAAGACCTCTTCAAGACTTGTAGTGTCCCTGGTACTCCCTCCAGCACCCCCGTGCTGTACACTCAGAATGTTGAGCCTGACTCTGGAGAAGCAGAGCTGGACAGCAGAGACCTGGAAATGTCTCAGAAAGTCAGGCGGTCGTACAGTCGGCTACAGAGCCTTGGTTGTGCCTCAACCTCCACCCCTGGCCGCCGATCCTTCTTTGGCTTTGAGGGACCTGACGACTTGCCTGGAGTCTCACCTGTCGTGTGTTCAAAGTTAATCGAGACCCCAAAGGTACCTGCAAAGGACTTGGTTCCGGCTAGAACGAAGGACTTGGTTCCAGATAGTACGAAGGACTTGGTTCCGGCTAGAACGCTCCCTGGAATCTCTCCCCCAGTTGTGAAAGAGAAACGAAAGAAGAAGGTTCCTGAAATCCTG cattttcacctgcagtatgtggccctaaccctgtgttctgtctcctctagATCTCACTGACTCTTGAAAAAGAAAATAACCCACCACTCAAGGTTTCCACAAAAGTAGACCTTTATAGGACTTGCAGTATTCCAGGTACTCCCTCCAGCACTCCTGTACACTATACTGAGAATGTAGAGCCAGACTCAGGTGACGCAGAGCTTGACAGTAGAGACTTGGCAATGTCTCAGAAAGTCCGTTGGTCATGCAGTTGGCTCCATAGCTTTAGTTGTGCGTCCACTGCAACACCAGGCCGCAGATCTTTCTTTGGTTTTGAGGGCCCAGATGACTTGCCTGGAGACTCACAGTTGGTGTGCTCAGAGTTGATTAAGAAACCAAAGGTACCGGCAAAAGATTTGGTCCGAGCCCGAACAAAGGATTTAGTTCCAGACAGTAAAAAGGACTTAGTCCCTGCCCGGACACTCCCTGGAAATGCTCCACCAGTTGTGAAGGAGATATGGAAGAAGAAGGTTCCGGAAATATTGgtgaggaggactaaactagctgctttgccagttggaacatctacttaatt Alignment from Exonerate_protein2genome ATCTCTTTTATTTTGGAAAAAGAGAACAACCCTCCGCTCAAGGTACCCACGAAAGAAGACCTCTTCAAGACTTGTAGTGTCCCTGGTACTCCCTCCAGCACCCCCGTGCTGTACACTCAGAATGTTGAGCCTGACTCTGGAGAAGCAGAGCTGGACAGCAGAGACCTGGAAATGTCTCAGAAAGTCAGGCGGTCGTACAGTCGGCTACAGAGCCTTGGTTGTGCCTCAACCTCCACCCCTGGCCGCCGATCCTTCTTTGGCTTTGAGGGACCTGACGACTTGCCTGGAGTCTCACCTGTCGTGTGTTCAAAGTTAATCGAGACCCCAAAGGTACCTGCAAAGGACTTGGTTCCGGCTAGAACGAAGGACTTGGTTCCAGATAGTACGAAGGACTTGGTTCCGGCTAGAACGCTCCCTGGAATCTCTCCCCCAGTTGTGAAAGAGAAACGAAAGAAGAAGGTTCCTGAAATCCTG cattttcacctgcagtatgtggccctaaccctgtgttctgtctcctctagATCTCACTGACTCTTGAAAAAGAAAATAACCCACCACTCAAGGTTTCCACAAAAGTAGACCTTTATAGGACTTGCAGTATTCCAGGTACTCCCTCCAGCACTCCTGTACACTATACTGAGAATGTAGAGCCAGACTCAGGTGACGCAGAGCTTGACAGTAGAGACTTGGCAATGTCTCAGAAAGTCCGTTGGTCATGCAGTTGGCTCCATAGCTTTAGTTGTGCGTCCACTGCAACACCAGGCCGCAGATCTTTCTTTGGTTTTGAGGGCCCAGATGACTTGCCTGGAGACTCACAGTTGGTGTGCTCAGAGTTGATTAAGAAACCAAAGGTACCGGCAAAAGATTTGGTCCGAGCCCGAACAAAGGATTTAGTTCCAGACAGTAAAAAGGACTTAGTCCCTGCCCGGACACTCCCTGGAAATGCTCCACCAGTTGTGAAGGAGATATGGAAGAAGAAGGTTCCGGAAATATTGgtgaggaggactaaactagctgctttgccagttggaacatctacttaatt Alignment from Exonerate_coding2genome ATCTCTTTTATTTTGGAAAAAGAGAACAACCCTCCGCTCAAGGTACCCACGAAAGAAGACCTCTTCAAGACTTGTAGTGTCCCTGGTACTCCCTCCAGCACCCCCGTGCTGTACACTCAGAATGTTGAGCCTGACTCTGGAGAAGCAGAGCTGGACAGCAGAGACCTGGAAATGTCTCAGAAAGTCAGGCGGTCGTACAGTCGGCTACAGAGCCTTGGTTGTGCCTCAACCTCCACCCCTGGCCGCCGATCCTTCTTTGGCTTTGAGGGACCTGACGACTTGCCTGGAGTCTCACCTGTCGTGTGTTCAAAGTTAATCGAGACCCCAAAGGTACCTGCAAAGGACTTGGTTCCGGCTAGAACGAAGGACTTGGTTCCAGATAGTACGAAGGACTTGGTTCCGGCTAGAACGCTCCCTGGAATCTCTCCCCCAGTTGTGAAAGAGAAACGAAAGAAGAAGGTTCCTGAAATCCTG cattttcacctgcagtatgtggccctaaccctgtgttctgtctcctctagATCTCACTGACTCTTGAAAAAGAAAATAACCCACCACTCAAGGTTTCCACAAAAGTAGACCTTTATAGGACTTGCAGTATTCCAGGTACTCCCTCCAGCACTCCTGTACACTATACTGAGAATGTAGAGCCAGACTCAGGTGACGCAGAGCTTGACAGTAGAGACTTGGCAATGTCTCAGAAAGTCCGTTGGTCATGCAGTTGGCTCCATAGCTTTAGTTGTGCGTCCACTGCAACACCAGGCCGCAGATCTTTCTTTGGTTTTGAGGGCCCAGATGACTTGCCTGGAGACTCACAGTTGGTGTGCTCAGAGTTGATTAAGAAACCAAAGGTACCGGCAAAAGATTTGGTCCGAGCCCGAACAAAGGATTTAGTTCCAGACAGTAAAAAGGACTTAGTCCCTGCCCGGACACTCCCTGGAAATGCTCCACCAGTTGTGAAGGAGATATGGAAGAAGAAGGTTCCGGAAATATTGgtgaggaggactaaactagctgctttgccagttggaacatctacttaatt Alignment from GeneWise ATCTCTTTTATTTTGGAAAAAGAGAACAACCCTCCGCTCAAGGTACCCACGAAAGAAGACCTCTTCAAGACTTGTAGTGTCCCTGGTACTCCCTCCAGCACCCCCGTGCTGTACACTCAGAATGTTGAGCCTGACTCTGGAGAAGCAGAGCTGGACAGCAGAGACCTGGAAATGTCTCAGAAAGTCAGGCGGTCGTACAGTCGGCTACAGAGCCTTGGTTGTGCCTCAACCTCCACCCCTGGCCGCCGATCCTTCTTTGGCTTTGAGGGACCTGACGACTTGCCTGGAGTCTCACCTGTCGTGTGTTCAAAGTTAATCGAGACCCCAAAGGTACCTGCAAAGGACTTGGTTCCGGCTAGAACGAAGGACTTGGTTCCAGATAGTACGAAGGACTTGGTTCCGGCTAGAACGCTCCCTGGAATCTCTCCCCCAGTTGTGAAAGAGAAACGAAAGAAGAAGGTTCCTGAAATCCTG cattttcacctgcagtatgtggccctaaccctgtgttctgtctcctctagATCTCACTGACTCTTGAAAAAGAAAATAACCCACCACTCAAGGTTTCCACAAAAGTAGACCTTTATAGGACTTGCAGTATTCCAGGTACTCCCTCCAGCACTCCTGTACACTATACTGAGAATGTAGAGCCAGACTCAGGTGACGCAGAGCTTGACAGTAGAGACTTGGCAATGTCTCAGAAAGTCCGTTGGTCATGCAGTTGGCTCCATAGCTTTAGTTGTGCGTCCACTGCAACACCAGGCCGCAGATCTTTCTTTGGTTTTGAGGGCCCAGATGACTTGCCTGGAGACTCACAGTTGGTGTGCTCAGAGTTGATTAAGAAACCAAAGGTACCGGCAAAAGATTTGGTCCGAGCCCGAACAAAGGATTTAGTTCCAGACAGTAAAAAGGACTTAGTCCCTGCCCGGACACTCCCTGGAAATGCTCCACCAGTTGTGAAGGAGATATGGAAGAAGAAGGTTCCGGAAATATTGgtgaggaggactaaactagctgctttgccagttggaacatctacttaatt #### Cep55_ID7509_4 --> 0 - 1 Original Alignment GCTCTGGAGAAAAACCAGCAATGGCTTGTGTATGATCAGCAGCGAGAGGCCTACGTTAAAGGGCTTTTAGCAAAGATCTTCGAGCTGGAAAAGAGAACAGAGACAGCCGCTGCTTCCCTCACACAGCAGATGAAGAAGATTGAATCAGAAg acatgcacattatcctgtggtcttagctcattcctctctttcatccttagGCTCTTGAGAAGAACCAGCAGTGGCTCGTGTATGATAAGCAACGTGAGGCTTATGTTAAAGGGCTCCTCGCTAAGATCTTTGAGTTGGAAAAGAAAACAGAAACAGCAGCAGCTGCCCTAACACAACAGATGAAAAAAATTGAATCAGAGggtcagttgtggtacacaccaactcaagcagagaaaggagatacttaccta Alignment from CESAR GCTCTGGAGAAAAACCAGCAATGGCTTGTGTATGATCAGCAGCGAGAGGCCTACGTTAAAGGGCTTTTAGCAAAGATCTTCGAGCTGGAAAAGAGAACAGAGACAGCCGCTGCTTCCCTCACACAGCAGATGAAGAAGATTGAATCAGAAg acatgcacattatcctgtggtcttagctcattcctctctttcatccttagGCTCTTGAGAAGAACCAGCAGTGGCTCGTGTATGATAAGCAACGTGAGGCTTATGTTAAAGGGCTCCTCGCTAAGATCTTTGAGTTGGAAAAGAAAACAGAAACAGCAGCAGCTGCCCTAACACAACAGATGAAAAAAATTGAATCAGAGggtcagttgtggtacacaccaactcaagcagagaaaggagatacttaccta Alignment from Spaln_aa2Genome GCTCTGGAGAAAAACCAGCAATGGCTTGTGTATGATCAGCAGCGAGAGGCCTACGTTAAAGGGCTTTTAGCAAAGATCTTCGAGCTGGAAAAGAGAACAGAGACAGCCGCTGCTTCCCTCACACAGCAGATGAAGAAGATTGAATCAGAAG acatgcacattatcctgtggtcttagctcattcctctctttcatccttagGCTCTTGAGAAGAACCAGCAGTGGCTCGTGTATGATAAGCAACGTGAGGCTTATGTTAAAGGGCTCCTCGCTAAGATCTTTGAGTTGGAAAAGAAAACAGAAACAGCAGCAGCTGCCCTAACACAACAGATGAAAAAAATTGAATCAGAGGgtcagttgtggtacacaccaactcaagcagagaaaggagatacttaccta Alignment from Spaln_nt2Genome GCTCTGGAGAAAAACCAGCAATGGCTTGTGTATGATCAGCAGCGAGAGGCCTACGTTAAAGGGCTTTTAGCAAAGATCTTCGAGCTGGAAAAGAGAACAGAGACAGCCGCTGCTTCCCTCACACAGCAGATGAAGAAGATTGAATCAGAAG acatgcacattatcctgtggtcttagctcattcctctctttcatccttagGCTCTTGAGAAGAACCAGCAGTGGCTCGTGTATGATAAGCAACGTGAGGCTTATGTTAAAGGGCTCCTCGCTAAGATCTTTGAGTTGGAAAAGAAAACAGAAACAGCAGCAGCTGCCCTAACACAACAGATGAAAAAAATTGAATCAGAGGgtcagttgtggtacacaccaactcaagcagagaaaggagatacttaccta Alignment from Pairagon GCTCTGGAGAAAAACCAGCAATGGCTTGTGTATGATCAGCAGCGAGAGGCCTACGTTAAAGGGCTTTTAGCAAAGATCTTCGAGCTGGAAAAGAGAACAGAGACAGCCGCTGCTTCCCTCACACAGCAGATGAAGAAGATTGAATCAGAAG acatgcacattatcctgtggtcttagctcattcctctctttcatccttagGCTCTTGAGAAGAACCAGCAGTGGCTCGTGTATGATAAGCAACGTGAGGCTTATGTTAAAGGGCTCCTCGCTAAGATCTTTGAGTTGGAAAAGAAAACAGAAACAGCAGCAGCTGCCCTAACACAACAGATGAAAAAAATTGAATCAGAGGgtcagttgtggtacacaccaactcaagcagagaaaggagatacttaccta Alignment from Exonerate_protein2genome GCTCTGGAGAAAAACCAGCAATGGCTTGTGTATGATCAGCAGCGAGAGGCCTACGTTAAAGGGCTTTTAGCAAAGATCTTCGAGCTGGAAAAGAGAACAGAGACAGCCGCTGCTTCCCTCACACAGCAGATGAAGAAGATTGAATCAGAAG acatgcacattatcctgtggtcttagctcattcctctctttcatccttagGCTCTTGAGAAGAACCAGCAGTGGCTCGTGTATGATAAGCAACGTGAGGCTTATGTTAAAGGGCTCCTCGCTAAGATCTTTGAGTTGGAAAAGAAAACAGAAACAGCAGCAGCTGCCCTAACACAACAGATGAAAAAAATTGAATCAGAGGgtcagttgtggtacacaccaactcaagcagagaaaggagatacttaccta Alignment from Exonerate_coding2genome GCTCTGGAGAAAAACCAGCAATGGCTTGTGTATGATCAGCAGCGAGAGGCCTACGTTAAAGGGCTTTTAGCAAAGATCTTCGAGCTGGAAAAGAGAACAGAGACAGCCGCTGCTTCCCTCACACAGCAGATGAAGAAGATTGAATCAGAAG acatgcacattatcctgtggtcttagctcattcctctctttcatccttagGCTCTTGAGAAGAACCAGCAGTGGCTCGTGTATGATAAGCAACGTGAGGCTTATGTTAAAGGGCTCCTCGCTAAGATCTTTGAGTTGGAAAAGAAAACAGAAACAGCAGCAGCTGCCCTAACACAACAGATGAAAAAAATTGAATCAGAGGgtcagttgtggtacacaccaactcaagcagagaaaggagatacttaccta Alignment from GeneWise GCTCTGGAGAAAAACCAGCAATGGCTTGTGTATGATCAGCAGCGAGAGGCCTACGTTAAAGGGCTTTTAGCAAAGATCTTCGAGCTGGAAAAGAGAACAGAGACAGCCGCTGCTTCCCTCACACAGCAGATGAAGAAGATTGAATCAGAAG acatgcacattatcctgtggtcttagctcattcctctctttcatccttagGCTCTTGAGAAGAACCAGCAGTGGCTCGTGTATGATAAGCAACGTGAGGCTTATGTTAAAGGGCTCCTCGCTAAGATCTTTGAGTTGGAAAAGAAAACAGAAACAGCAGCAGCTGCCCTAACACAACAGATGAAAAAAATTGAATCAGAGGgtcagttgtggtacacaccaactcaagcagagaaaggagatacttaccta #### Cep78_ID3975_11 --> 0 - 0 Original Alignment AAATCAGATTTCCCGGTGACTGTGACAGTAGAAAGTCCTTCATCCTCAGAAACTGACGAGACTGAAGATTCTTCAGAAAGTGTCCAGGAAGCGCCTCAGAAAACCAGCATAAAAGAAGAAACATTACAG tcagttttctgttttttgcactcagcagtagattctcctttcttttatagAAATTAGACTTTCCGGTTACTGTCACTGTAGAAAGTGCTACATCTTCAGAAACTGATGAGACTGAAGATTCTTCTGAGACTGTCCAGGAAGCCCCTCAGAAAACAGGCATAAAAGAAGAGACATTACATgtaagtagtatgagtctcattattctgttttttgtgcaaggtttatggct Alignment from CESAR AAATCAGATTTCCCGGTGACTGTGACAGTAGAAAGTCCTTCATCCTCAGAAACTGACGAGACTGAAGATTCTTCAGAAAGTGTCCAGGAAGCGCCTCAGAAAACCAGCATAAAAGAAGAAACATTACAG tcagttttctgttttttgcactcagcagtagattctcctttcttttatagAAATTAGACTTTCCGGTTACTGTCACTGTAGAAAGTGCTACATCTTCAGAAACTGATGAGACTGAAGATTCTTCTGAGACTGTCCAGGAAGCCCCTCAGAAAACAGGCATAAAAGAAGAGACATTACATgtaagtagtatgagtctcattattctgttttttgtgcaaggtttatggct Alignment from Spaln_aa2Genome AAATCAGATTTCCCGGTGACTGTGACAGTAGAAAGTCCTTCATCCTCAGAAACTGACGAGACTGAAGATTCTTCAGAAAGTGTCCAGGAAGCGCCTCAGAAAACCAGCATAAAAGAAGAAACATTACAG tcagttttctgttttttgcactcagcagtagattctcctttcttttatagAAATTAGACTTTCCGGTTACTGTCACTGTAGAAAGTGCTACATCTTCAGAAACTGATGAGACTGAAGATTCTTCTGAGACTGTCCAGGAAGCCCCTCAGAAAACAGGCATAAAAGAAGAGACATTACATgtaagtagtatgagtctcattattctgttttttgtgcaaggtttatggct Alignment from Spaln_nt2Genome AAATCAGATTTCCCGGTGACTGTGACAGTAGAAAGTCCTTCATCCTCAGAAACTGACGAGACTGAAGATTCTTCAGAAAGTGTCCAGGAAGCGCCTCAGAAAACCAGCATAAAAGAAGAAACATTACAG tcagttttctgttttttgcactcagcagtagattctcctttcttttatagAAATTAGACTTTCCGGTTACTGTCACTGTAGAAAGTGCTACATCTTCAGAAACTGATGAGACTGAAGATTCTTCTGAGACTGTCCAGGAAGCCCCTCAGAAAACAGGCATAAAAGAAGAGACATTACATgtaagtagtatgagtctcattattctgttttttgtgcaaggtttatggct Alignment from Pairagon AAATCAGATTTCCCGGTGACTGTGACAGTAGAAAGTCCTTCATCCTCAGAAACTGACGAGACTGAAGATTCTTCAGAAAGTGTCCAGGAAGCGCCTCAGAAAACCAGCATAAAAGAAGAAACATTACAG tcagttttctgttttttgcactcagcagtagattctcctttcttttatagAAATTAGACTTTCCGGTTACTGTCACTGTAGAAAGTGCTACATCTTCAGAAACTGATGAGACTGAAGATTCTTCTGAGACTGTCCAGGAAGCCCCTCAGAAAACAGGCATAAAAGAAGAGACATTACATgtaagtagtatgagtctcattattctgttttttgtgcaaggtttatggct Alignment from Exonerate_protein2genome AAATCAGATTTCCCGGTGACTGTGACAGTAGAAAGTCCTTCATCCTCAGAAACTGACGAGACTGAAGATTCTTCAGAAAGTGTCCAGGAAGCGCCTCAGAAAACCAGCATAAAAGAAGAAACATTACAG tcagttttctgttttttgcactcagcagtagattctcctttcttttatagAAATTAGACTTTCCGGTTACTGTCACTGTAGAAAGTGCTACATCTTCAGAAACTGATGAGACTGAAGATTCTTCTGAGACTGTCCAGGAAGCCCCTCAGAAAACAGGCATAAAAGAAGAGACATTACATgtaagtagtatgagtctcattattctgttttttgtgcaaggtttatggct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AAATCAGATTTCCCGGTGACTGTGACAGTAGAAAGTCCTTCATCCTCAGAAACTGACGAGACTGAAGATTCTTCAGAAAGTGTCCAGGAAGCGCCTCAGAAAACCAGCATAAAAGAAGAAACATTACAG tcagttttctgttttttgcactcagcagtagattctcctttcttttatagAAATTAGACTTTCCGGTTACTGTCACTGTAGAAAGTGCTACATCTTCAGAAACTGATGAGACTGAAGATTCTTCTGAGACTGTCCAGGAAGCCCCTCAGAAAACAGGCATAAAAGAAGAGACATTACATgtaagtagtatgagtctcattattctgttttttgtgcaaggtttatggct #### Chuk_ID8909_19 --> 0 - 2 Original Alignment ACACAGAGTTCTGCCCGCTCTCTTGTAGGATACAGTCTAGAAGGCACAGTAACCCCTCCAGTATCAGCATGGCTGCCCCCTACATTAGCAGACCGTGAACATCCTCTGACATGTGTGGTAACTCCTCAAGATgg gtgctcatgcagacaggtgctgaaagatgaaactttgtattttgttctagACACTTAGTTCTGCTCGCTCTCTCCTTGGGTACAGTTTAGAAGGCACTGTAACACCGCCAGTCTCAGTATGGTTGCCTCCAACAATAGCTGACTGTGAACATCCTCTGATATGTATGGTCACCCTTCAAGATgggtgaagttaccatataactggttaaatctcgcggtataggtatgcacaat Alignment from CESAR ACACAGAGTTCTGCCCGCTCTCTTGTAGGATACAGTCTAGAAGGCACAGTAACCCCTCCAGTATCAGCATGGCTGCCCCCTACATTAGCAGACCGTGAACATCCTCTGACATGTGTGGTAACTCCTCAAGATgg gtgctcatgcagacaggtgctgaaagatgaaactttgtattttgttctagACACTTAGTTCTGCTCGCTCTCTCCTTGGGTACAGTTTAGAAGGCACTGTAACACCGCCAGTCTCAGTATGGTTGCCTCCAACAATAGCTGACTGTGAACATCCTCTGATATGTATGGTCACCCTTCAAGATgggtgaagttaccatataactggttaaatctcgcggtataggtatgcacaat Alignment from Spaln_aa2Genome ACACAGAGTTCTGCCCGCTCTCTTGTAGGATACAGTCTAGAAGGCACAGTAACCCCTCCAGTATCAGCATGGCTGCCCCCTACATTAGCAGACCGTGAACATCCTCTGACATGTGTGGTAACTCCTCAAGATGG gtgctcatgcagacaggtgctgaaagatgaaactttgtattttgttctagACACTTAGTTCTGCTCGCTCTCTCCTTGGGTACAGTTTAGAAGGCACTGTAACACCGCCAGTCTCAGTATGGTTGCCTCCAACAATAGCTGACTGTGAACATCCTCTGATATGTATGGTCACCCTTCAAGATGGgtgaagttaccatataactggttaaatctcgcggtataggtatgcacaat Alignment from Spaln_nt2Genome ACACAGAGTTCTGCCCGCTCTCTTGTAGGATACAGTCTAGAAGGCACAGTAACCCCTCCAGTATCAGCATGGCTGCCCCCTACATTAGCAGACCGTGAACATCCTCTGACATGTGTGGTAACTCCTCAAGATGG gtgctcatgcagacaggtgctgaaagatgaaactttgtattttgttctagACACTTAGTTCTGCTCGCTCTCTCCTTGGGTACAGTTTAGAAGGCACTGTAACACCGCCAGTCTCAGTATGGTTGCCTCCAACAATAGCTGACTGTGAACATCCTCTGATATGTATGGTCACCCTTCAAGATGGgtgaagttaccatataactggttaaatctcgcggtataggtatgcacaat Alignment from Pairagon ACACAGAGTTCTGCCCGCTCTCTTGTAGGATACAGTCTAGAAGGCACAGTAACCCCTCCAGTATCAGCATGGCTGCCCCCTACATTAGCAGACCGTGAACATCCTCTGACATGTGTGGTAACTCCTCAAGATGG gtgctcatgcagacaggtgctgaaagatgaaactttgtattttgttctagACACTTAGTTCTGCTCGCTCTCTCCTTGGGTACAGTTTAGAAGGCACTGTAACACCGCCAGTCTCAGTATGGTTGCCTCCAACAATAGCTGACTGTGAACATCCTCTGATATGTATGGTCACCCTTCAAGATGGgtgaagttaccatataactggttaaatctcgcggtataggtatgcacaat Alignment from Exonerate_protein2genome ACACAGAGTTCTGCCCGCTCTCTTGTAGGATACAGTCTAGAAGGCACAGTAACCCCTCCAGTATCAGCATGGCTGCCCCCTACATTAGCAGACCGTGAACATCCTCTGACATGTGTGGTAACTCCTCAAGATGG gtgctcatgcagacaggtgctgaaagatgaaactttgtattttgttctagACACTTAGTTCTGCTCGCTCTCTCCTTGGGTACAGTTTAGAAGGCACTGTAACACCGCCAGTCTCAGTATGGTTGCCTCCAACAATAGCTGACTGTGAACATCCTCTGATATGTATGGTCACCCTTCAAGATGGgtgaagttaccatataactggttaaatctcgcggtataggtatgcacaat Alignment from Exonerate_coding2genome gtgctcatgcagacaggtgctgaaagatgaaactttgtattttgttctagacacttagttctgctcgctctctccttgggtacagtttagaaggcactgtaacaccgccagtctcagtatggttgcctccaacaatagctgactgtgaacatcctctgatatgtatggtcacccttcaagatgggtgaagttaccatataactggttaaatctcgcggtataggtatgcacaat Alignment from GeneWise ACACAGAGTTCTGCCCGCTCTCTTGTAGGATACAGTCTAGAAGGCACAGTAACCCCTCCAGTATCAGCATGGCTGCCCCCTACATTAGCAGACCGTGAACATCCTCTGACATGTGTGGTAACTCCTCAAGATGG gtgctcatgcagacaggtgctgaaagatgaaactttgtattttgttctagACACTTAGTTCTGCTCGCTCTCTCCTTGGGTACAGTTTAGAAGGCACTGTAACACCGCCAGTCTCAGTATGGTTGCCTCCAACAATAGCTGACTGTGAACATCCTCTGATATGTATGGTCACCCTTCAAGATGGgtgaagttaccatataactggttaaatctcgcggtataggtatgcacaat #### Chuk_ID8919_9 --> 1 - 0 Original Alignment tTTAATAGTAGAGCCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGACCCACAGCAGAGAGGGGGACCTATTGATCTTACTTTGAAGCAGCCAAGATGTTTTGCATTAATGGATCACATTCTCAATTTAAAG gttgtaaaattaattgggcacatgggattactgcattttctctgttacagtCTAATAGTAGAACCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGAGCCACAGCAAAGAGGTGGACCCATAGAGCTCACATTGAAGCAACCAAGGTGTTTTGCCTTAATGGAACAGATCCTTAATCTAAAGgtgagttactggtatgcagcatatcagtgcaagtagagtggcgctgacag Alignment from CESAR tTTAATAGTAGAGCCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGACCCACAGCAGAGAGGGGGACCTATTGATCTTACTTTGAAGCAGCCAAGATGTTTTGCATTAATGGATCACATTCTCAATTTAAAG gttgtaaaattaattgggcacatgggattactgcattttctctgttacagtCTAATAGTAGAACCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGAGCCACAGCAAAGAGGTGGACCCATAGAGCTCACATTGAAGCAACCAAGGTGTTTTGCCTTAATGGAACAGATCCTTAATCTAAAGgtgagttactggtatgcagcatatcagtgcaagtagagtggcgctgacag Alignment from Spaln_aa2Genome TTTAATAGTAGAGCCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGACCCACAGCAGAGAGGGGGACCTATTGATCTTACTTTGAAGCAGCCAAGATGTTTTGCATTAATGGATCACATTCTCAATTTAAAG gttgtaaaattaattgggcacatgggattactgcattttctctgttacagTCTAATAGTAGAACCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGAGCCACAGCAAAGAGGTGGACCCATAGAGCTCACATTGAAGCAACCAAGGTGTTTTGCCTTAATGGAACAGATCCTTAATCTAAAGgtgagttactggtatgcagcatatcagtgcaagtagagtggcgctgacag Alignment from Spaln_nt2Genome TTTAATAGTAGAGCCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGACCCACAGCAGAGAGGGGGACCTATTGATCTTACTTTGAAGCAGCCAAGATGTTTTGCATTAATGGATCACATTCTCAATTTAAAG gttgtaaaattaattgggcacatgggattactgcattttctctgttacagTCTAATAGTAGAACCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGAGCCACAGCAAAGAGGTGGACCCATAGAGCTCACATTGAAGCAACCAAGGTGTTTTGCCTTAATGGAACAGATCCTTAATCTAAAGgtgagttactggtatgcagcatatcagtgcaagtagagtggcgctgacag Alignment from Pairagon TTTAATAGTAGAGCCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGACCCACAGCAGAGAGGGGGACCTATTGATCTTACTTTGAAGCAGCCAAGATGTTTTGCATTAATGGATCACATTCTCAATTTAAAG gttgtaaaattaattgggcacatgggattactgcattttctctgttacagTCTAATAGTAGAACCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGAGCCACAGCAAAGAGGTGGACCCATAGAGCTCACATTGAAGCAACCAAGGTGTTTTGCCTTAATGGAACAGATCCTTAATCTAAAGgtgagttactggtatgcagcatatcagtgcaagtagagtggcgctgacag Alignment from Exonerate_protein2genome TTTAATAGTAGAGCCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGACCCACAGCAGAGAGGGGGACCTATTGATCTTACTTTGAAGCAGCCAAGATGTTTTGCATTAATGGATCACATTCTCAATTTAAAG gttgtaaaattaattgggcacatgggattactgcattttctctgttacagTCTAATAGTAGAACCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGAGCCACAGCAAAGAGGTGGACCCATAGAGCTCACATTGAAGCAACCAAGGTGTTTTGCCTTAATGGAACAGATCCTTAATCTAAAGgtgagttactggtatgcagcatatcagtgcaagtagagtggcgctgacag Alignment from Exonerate_coding2genome TTTAATAGTAGAGCCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGACCCACAGCAGAGAGGGGGACCTATTGATCTTACTTTGAAGCAGCCAAGATGTTTTGCATTAATGGATCACATTCTCAATTTAAAG gttgtaaaattaattgggcacatgggattactgcattttctctgttacagTCTAATAGTAGAACCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGAGCCACAGCAAAGAGGTGGACCCATAGAGCTCACATTGAAGCAACCAAGGTGTTTTGCCTTAATGGAACAGATCCTTAATCTAAAGgtgagttactggtatgcagcatatcagtgcaagtagagtggcgctgacag Alignment from GeneWise TTTAATAGTAGAGCCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGACCCACAGCAGAGAGGGGGACCTATTGATCTTACTTTGAAGCAGCCAAGATGTTTTGCATTAATGGATCACATTCTCAATTTAAAG gttgtaaaattaattgggcacatgggattactgcattttctctgttacagTCTAATAGTAGAACCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGAGCCACAGCAAAGAGGTGGACCCATAGAGCTCACATTGAAGCAACCAAGGTGTTTTGCCTTAATGGAACAGATCCTTAATCTAAAGgtgagttactggtatgcagcatatcagtgcaagtagagtggcgctgacag #### Chuk_ID8924_4 --> 0 - 1 Original Alignment CTACTCAACAAACCAGAAAATTGTTGTGGACTTAAAGAAAGCCAGATACTTTCTTTACTGAGTGACATAg ttgatacagtggtggtgcatcagttgttctctcattttccttccttacagCTACTAAACAAACCAGAAAATTGTTGTGGGCTTAAAGAAAGCCAGATCCTCTCACTTCTAAGTGACATAggtacctaccgcccttagtcgtcccactatccatttaagacctctaactat Alignment from CESAR CTACTCAACAAACCAGAAAATTGTTGTGGACTTAAAGAAAGCCAGATACTTTCTTTACTGAGTGACATAg ttgatacagtggtggtgcatcagttgttctctcattttccttccttacagCTACTAAACAAACCAGAAAATTGTTGTGGGCTTAAAGAAAGCCAGATCCTCTCACTTCTAAGTGACATAggtacctaccgcccttagtcgtcccactatccatttaagacctctaactat Alignment from Spaln_aa2Genome CTACTCAACAAACCAGAAAATTGTTGTGGACTTAAAGAAAGCCAGATACTTTCTTTACTGAGTGACATAG ttgatacagtggtggtgcatcagttgttctctcattttccttccttacagCTACTAAACAAACCAGAAAATTGTTGTGGGCTTAAAGAAAGCCAGATCCTCTCACTTCTAAGTGACATAGgtacctaccgcccttagtcgtcccactatccatttaagacctctaactat Alignment from Spaln_nt2Genome CTACTCAACAAACCAGAAAATTGTTGTGGACTTAAAGAAAGCCAGATACTTTCTTTACTGAGTGACATAG ttgatacagtggtggtgcatcagttgttctctcattttccttccttacagCTACTAAACAAACCAGAAAATTGTTGTGGGCTTAAAGAAAGCCAGATCCTCTCACTTCTAAGTGACATAGgtacctaccgcccttagtcgtcccactatccatttaagacctctaactat Alignment from Pairagon CTACTCAACAAACCAGAAAATTGTTGTGGACTTAAAGAAAGCCAGATACTTTCTTTACTGAGTGACATAG ttgatacagtggtggtgcatcagttgttctctcattttccttccttacagCTACTAAACAAACCAGAAAATTGTTGTGGGCTTAAAGAAAGCCAGATCCTCTCACTTCTAAGTGACATAGgtacctaccgcccttagtcgtcccactatccatttaagacctctaactat Alignment from Exonerate_protein2genome CTACTCAACAAACCAGAAAATTGTTGTGGACTTAAAGAAAGCCAGATACTTTCTTTACTGAGTGACATAG ttgatacagtggtggtgcatcagttgttctctcattttccttccttacagCTACTAAACAAACCAGAAAATTGTTGTGGGCTTAAAGAAAGCCAGATCCTCTCACTTCTAAGTGACATAGgtacctaccgcccttagtcgtcccactatccatttaagacctctaactat Alignment from Exonerate_coding2genome CTACTCAACAAACCAGAAAATTGTTGTGGACTTAAAGAAAGCCAGATACTTTCTTTACTGAGTGACATAG ttgatacagtggtggtgcatcagttgttctctcattttccttccttacagCTACTAAACAAACCAGAAAATTGTTGTGGGCTTAAAGAAAGCCAGATCCTCTCACTTCTAAGTGACATAGgtacctaccgcccttagtcgtcccactatccatttaagacctctaactat Alignment from GeneWise CTACTCAACAAACCAGAAAATTGTTGTGGACTTAAAGAAAGCCAGATACTTTCTTTACTGAGTGACATAG ttgatacagtggtggtgcatcagttgttctctcattttccttccttacagCTACTAAACAAACCAGAAAATTGTTGTGGGCTTAAAGAAAGCCAGATCCTCTCACTTCTAAGTGACATAGgtacctaccgcccttagtcgtcccactatccatttaagacctctaactat #### Chuk_ID8926_2 --> 0 - 2 Original Alignment GAACTTGATCTCAAAATAGCAATTAAGTCTTGTCGTTTAGAGCTAAGTTCCAAAAACAGAGAGCGATGGTGCCATGAAATCCAGATCATGAAAaa tctgttagctcaattactcatggatgaggttccttcctgtctctcaccagGAACTTGACCTCAGAATAGCAATTAAGTCTTGTCGGTTAGAGTTAAGTTCCAAAAACAGAGAGCGATGGTGCGACGAAGTCCAAATCATGAAAaagtaaaaagtttacagtacacagtggttagatcttaagtctacaactaagt Alignment from CESAR GAACTTGATCTCAAAATAGCAATTAAGTCTTGTCGTTTAGAGCTAAGTTCCAAAAACAGAGAGCGATGGTGCCATGAAATCCAGATCATGAAAaa tctgttagctcaattactcatggatgaggttccttcctgtctctcaccagGAACTTGACCTCAGAATAGCAATTAAGTCTTGTCGGTTAGAGTTAAGTTCCAAAAACAGAGAGCGATGGTGCGACGAAGTCCAAATCATGAAAaagtaaaaagtttacagtacacagtggttagatcttaagtctacaactaagt Alignment from Spaln_aa2Genome GAACTTGATCTCAAAATAGCAATTAAGTCTTGTCGTTTAGAGCTAAGTTCCAAAAACAGAGAGCGATGGTGCCATGAAATCCAGATCATGAAAAA tctgttagctcaattactcatggatgaggttccttcctgtctctcaccagGAACTTGACCTCAGAATAGCAATTAAGTCTTGTCGGTTAGAGTTAAGTTCCAAAAACAGAGAGCGATGGTGCGACGAAGTCCAAATCATGAAAAAgtaaaaagtttacagtacacagtggttagatcttaagtctacaactaagt Alignment from Spaln_nt2Genome GAACTTGATCTCAAAATAGCAATTAAGTCTTGTCGTTTAGAGCTAAGTTCCAAAAACAGAGAGCGATGGTGCCATGAAATCCAGATCATGAAAAA tctgttagctcaattactcatggatgaggttccttcctgtctctcaccagGAACTTGACCTCAGAATAGCAATTAAGTCTTGTCGGTTAGAGTTAAGTTCCAAAAACAGAGAGCGATGGTGCGACGAAGTCCAAATCATGAAAAAgtaaaaagtttacagtacacagtggttagatcttaagtctacaactaagt Alignment from Pairagon GAACTTGATCTCAAAATAGCAATTAAGTCTTGTCGTTTAGAGCTAAGTTCCAAAAACAGAGAGCGATGGTGCCATGAAATCCAGATCATGAAAAA tctgttagctcaattactcatggatgaggttccttcctgtctctcaccagGAACTTGACCTCAGAATAGCAATTAAGTCTTGTCGGTTAGAGTTAAGTTCCAAAAACAGAGAGCGATGGTGCGACGAAGTCCAAATCATGAAAAAgtaaaaagtttacagtacacagtggttagatcttaagtctacaactaagt Alignment from Exonerate_protein2genome GAACTTGATCTCAAAATAGCAATTAAGTCTTGTCGTTTAGAGCTAAGTTCCAAAAACAGAGAGCGATGGTGCCATGAAATCCAGATCATGAAAAA tctgttagctcaattactcatggatgaggttccttcctgtctctcaccagGAACTTGACCTCAGAATAGCAATTAAGTCTTGTCGGTTAGAGTTAAGTTCCAAAAACAGAGAGCGATGGTGCGACGAAGTCCAAATCATGAAAAAgtaaaaagtttacagtacacagtggttagatcttaagtctacaactaagt Alignment from Exonerate_coding2genome GAACTTGATCTCAAAATAGCAATTAAGTCTTGTCGTTTAGAGCTAAGTTCCAAAAACAGAGAGCGATGGTGCCATGAAATCCAGATCATGAAAAA tctgttagctcaattactcatggatgaggttccttcctgtctctcaccagGAACTTGACCTCAGAATAGCAATTAAGTCTTGTCGGTTAGAGTTAAGTTCCAAAAACAGAGAGCGATGGTGCGACGAAGTCCAAATCATGAAAAAgtaaaaagtttacagtacacagtggttagatcttaagtctacaactaagt Alignment from GeneWise GAACTTGATCTCAAAATAGCAATTAAGTCTTGTCGTTTAGAGCTAAGTTCCAAAAACAGAGAGCGATGGTGCCATGAAATCCAGATCATGAAAAA tctgttagctcaattactcatggatgaggttccttcctgtctctcaccagGAACTTGACCTCAGAATAGCAATTAAGTCTTGTCGGTTAGAGTTAAGTTCCAAAAACAGAGAGCGATGGTGCGACGAAGTCCAAATCATGAAAAAgtaaaaagtttacagtacacagtggttagatcttaagtctacaactaagt #### Cnnm1_ID8730_2 --> 2 - 1 Original Alignment gaAAATCTCACTTGGCCATTGTCCAGAGAGTGAACAACGAGGGTGAAGGAGACCCTTTCTATGAGGTGATGGGCATTGTGACTCTGGAGGACATCATAGAAGAGATCATCAAGTCGGAGATCCTCGACGAAACTGACCTCTACa ctcagtaaagagttctgatcaagtctgtttgtctatcttcattctaataggaAAATCACGCTTGGCCATTGTCCAGCGAGTAAATAATGAGGGTGAAGGTGACCCTTTCTATGAGGTAATGGGCATTGTGACTCTGGAGGATATAATAGAAGAGATTATAAAGTCAGAAATCCTTGATGAAACTGATCTCTACagtaggtaagcaaagatcatgaatgaaatcctacttcagtcaatacgagcc Alignment from CESAR gaAAATCTCACTTGGCCATTGTCCAGAGAGTGAACAACGAGGGTGAAGGAGACCCTTTCTATGAGGTGATGGGCATTGTGACTCTGGAGGACATCATAGAAGAGATCATCAAGTCGGAGATCCTCGACGAAACTGACCTCTACa ctcagtaaagagttctgatcaagtctgtttgtctatcttcattctaataggaAAATCACGCTTGGCCATTGTCCAGCGAGTAAATAATGAGGGTGAAGGTGACCCTTTCTATGAGGTAATGGGCATTGTGACTCTGGAGGATATAATAGAAGAGATTATAAAGTCAGAAATCCTTGATGAAACTGATCTCTACagtaggtaagcaaagatcatgaatgaaatcctacttcagtcaatacgagcc Alignment from Spaln_aa2Genome GAAAATCTCACTTGGCCATTGTCCAGAGAGTGAACAACGAGGGTGAAGGAGACCCTTTCTATGAGGTGATGGGCATTGTGACTCTGGAGGACATCATAGAAGAGATCATCAAGTCGGAGATCCTCGACGAAACTGACCTCTACA ctcagtaaagagttctgatcaagtctgtttgtctatcttcattctaatagGAAAATCACGCTTGGCCATTGTCCAGCGAGTAAATAATGAGGGTGAAGGTGACCCTTTCTATGAGGTAATGGGCATTGTGACTCTGGAGGATATAATAGAAGAGATTATAAAGTCAGAAATCCTTGATGAAACTGATCTCTACAgtaggtaagcaaagatcatgaatgaaatcctacttcagtcaatacgagcc Alignment from Spaln_nt2Genome GAAAATCTCACTTGGCCATTGTCCAGAGAGTGAACAACGAGGGTGAAGGAGACCCTTTCTATGAGGTGATGGGCATTGTGACTCTGGAGGACATCATAGAAGAGATCATCAAGTCGGAGATCCTCGACGAAACTGACCTCTACA ctcagtaaagagttctgatcaagtctgtttgtctatcttcattctaatagGAAAATCACGCTTGGCCATTGTCCAGCGAGTAAATAATGAGGGTGAAGGTGACCCTTTCTATGAGGTAATGGGCATTGTGACTCTGGAGGATATAATAGAAGAGATTATAAAGTCAGAAATCCTTGATGAAACTGATCTCTACAgtaggtaagcaaagatcatgaatgaaatcctacttcagtcaatacgagcc Alignment from Pairagon GAAAATCTCACTTGGCCATTGTCCAGAGAGTGAACAACGAGGGTGAAGGAGACCCTTTCTATGAGGTGATGGGCATTGTGACTCTGGAGGACATCATAGAAGAGATCATCAAGTCGGAGATCCTCGACGAAACTGACCTCTACA ctcagtaaagagttctgatcaagtctgtttgtctatcttcattctaatagGAAAATCACGCTTGGCCATTGTCCAGCGAGTAAATAATGAGGGTGAAGGTGACCCTTTCTATGAGGTAATGGGCATTGTGACTCTGGAGGATATAATAGAAGAGATTATAAAGTCAGAAATCCTTGATGAAACTGATCTCTACAgtaggtaagcaaagatcatgaatgaaatcctacttcagtcaatacgagcc Alignment from Exonerate_protein2genome GAAAATCTCACTTGGCCATTGTCCAGAGAGTGAACAACGAGGGTGAAGGAGACCCTTTCTATGAGGTGATGGGCATTGTGACTCTGGAGGACATCATAGAAGAGATCATCAAGTCGGAGATCCTCGACGAAACTGACCTCTACA ctcagtaaagagttctgatcaagtctgtttgtctatcttcattctaatagGAAAATCACGCTTGGCCATTGTCCAGCGAGTAAATAATGAGGGTGAAGGTGACCCTTTCTATGAGGTAATGGGCATTGTGACTCTGGAGGATATAATAGAAGAGATTATAAAGTCAGAAATCCTTGATGAAACTGATCTCTACAgtaggtaagcaaagatcatgaatgaaatcctacttcagtcaatacgagcc Alignment from Exonerate_coding2genome GAAAATCTCACTTGGCCATTGTCCAGAGAGTGAACAACGAGGGTGAAGGAGACCCTTTCTATGAGGTGATGGGCATTGTGACTCTGGAGGACATCATAGAAGAGATCATCAAGTCGGAGATCCTCGACGAAACTGACCTCTACA ctcagtaaagagttctgatcaagtctgtttgtctatcttcattctaatagGAAAATCACGCTTGGCCATTGTCCAGCGAGTAAATAATGAGGGTGAAGGTGACCCTTTCTATGAGGTAATGGGCATTGTGACTCTGGAGGATATAATAGAAGAGATTATAAAGTCAGAAATCCTTGATGAAACTGATCTCTACAgtaggtaagcaaagatcatgaatgaaatcctacttcagtcaatacgagcc Alignment from GeneWise GAAAATCTCACTTGGCCATTGTCCAGAGAGTGAACAACGAGGGTGAAGGAGACCCTTTCTATGAGGTGATGGGCATTGTGACTCTGGAGGACATCATAGAAGAGATCATCAAGTCGGAGATCCTCGACGAAACTGACCTCTACA ctcagtaaagagttctgatcaagtctgtttgtctatcttcattctaatagGAAAATCACGCTTGGCCATTGTCCAGCGAGTAAATAATGAGGGTGAAGGTGACCCTTTCTATGAGGTAATGGGCATTGTGACTCTGGAGGATATAATAGAAGAGATTATAAAGTCAGAAATCCTTGATGAAACTGATCTCTACAgtaggtaagcaaagatcatgaatgaaatcctacttcagtcaatacgagcc #### Cnnm2_ID10029_7 --> 2 - 0 Original Alignment ggGAAAATAAGTCACCTCCTCGCCCCTGTGGCCTGAATCACTCAGATTCTCTCAGTCGGAGCGACCGGATTGACGCCATGACGCCAACCTTGGGGAGCAGCAACAACCAGCTCAGCTCTTCCTTCCTTCAAGTCTACATCCCTGACTACTCAGTACGAGCCCTCTCTGACCTACAGTTCGTCAAG tacaaaatattcttcagtagtcctgtcagttctgccctcctttgttttaggaGACAACACGACACCTTCTTGCCCCTGTGCACTGAATCACTCAGATTCTCTTAGTCATGGGGACCAAACTGAAGCAATGACACCAACCCTGGCAAGCAGCAACAACAAGTTCAGCTCTTCATTTCTCCTAGTTTTTCTTCCTGATCATTCAGTGCAAGCCCTGTGTGATCTACAGTTTGTTAAGgtgagctgggaggactctgccatgagcttcatatactgaatccattgaaa Alignment from CESAR ggGAAAATAAGTCACCTCCTCGCCCCTGTGGCCTGAATCACTCAGATTCTCTCAGTCGGAGCGACCGGATTGACGCCATGACGCCAACCTTGGGGAGCAGCAACAACCAGCTCAGCTCTTCCTTCCTTCAAGTCTACATCCCTGACTACTCAGTACGAGCCCTCTCTGACCTACAGTTCGTCAAG tacaaaatattcttcagtagtcctgtcagttctgccctcctttgttttaggaGACAACACGACACCTTCTTGCCCCTGTGCACTGAATCACTCAGATTCTCTTAGTCATGGGGACCAAACTGAAGCAATGACACCAACCCTGGCAAGCAGCAACAACAAGTTCAGCTCTTCATTTCTCCTAGTTTTTCTTCCTGATCATTCAGTGCAAGCCCTGTGTGATCTACAGTTTGTTAAGgtgagctgggaggactctgccatgagcttcatatactgaatccattgaaa Alignment from Spaln_aa2Genome GGGAAAATAAGTCACCTCCTCGCCCCTGTGGCCTGAATCACTCAGATTCTCTCAGTCGGAGCGACCGGATTGACGCCATGACGCCAACCTTGGGGAGCAGCAACAACCAGCTCAGCTCTTCCTTCCTTCAAGTCTACATCCCTGACTACTCAGTACGAGCCCTCTCTGACCTACAGTTCGTCAAG tacaaaatattcttcagtagtcctgtcagttctgccctcctttgttttagGAGACAACACGACACCTTCTTGCCCCTGTGCACTGAATCACTCAGATTCTCTTAGTCATGGGGACCAAACTGAAGCAATGACACCAACCCTGGCAAGCAGCAACAACAAGTTCAGCTCTTCATTTCTCCTAGTTTTTCTTCCTGATCATTCAGTGCAAGCCCTGTGTGATCTACAGTTTGTTAAGgtgagctgggaggactctgccatgagcttcatatactgaatccattgaaa Alignment from Spaln_nt2Genome GGGAAAATAAGTCACCTCCTCGCCCCTGTGGCCTGAATCACTCAGATTCTCTCAGTCGGAGCGACCGGATTGACGCCATGACGCCAACCTTGGGGAGCAGCAACAACCAGCTCAGCTCTTCCTTCCTTCAAGTCTACATCCCTGACTACTCAGTACGAGCCCTCTCTGACCTACAGTTCGTCAAG tacaaaatattcttcagtagtcctgtcagttctgccctcctttgttttagGAGACAACACGACACCTTCTTGCCCCTGTGCACTGAATCACTCAGATTCTCTTAGTCATGGGGACCAAACTGAAGCAATGACACCAACCCTGGCAAGCAGCAACAACAAGTTCAGCTCTTCATTTCTCCTAGTTTTTCTTCCTGATCATTCAGTGCAAGCCCTGTGTGATCTACAGTTTGTTAAGgtgagctgggaggactctgccatgagcttcatatactgaatccattgaaa Alignment from Pairagon GGGAAAATAAGTCACCTCCTCGCCCCTGTGGCCTGAATCACTCAGATTCTCTCAGTCGGAGCGACCGGATTGACGCCATGACGCCAACCTTGGGGAGCAGCAACAACCAGCTCAGCTCTTCCTTCCTTCAAGTCTACATCCCTGACTACTCAGTACGAGCCCTCTCTGACCTACAGTTCGTCAAG tacaaaatattcttcagtagtcctgtcagttctgccctcctttgttttagGAGACAACACGACACCTTCTTGCCCCTGTGCACTGAATCACTCAGATTCTCTTAGTCATGGGGACCAAACTGAAGCAATGACACCAACCCTGGCAAGCAGCAACAACAAGTTCAGCTCTTCATTTCTCCTAGTTTTTCTTCCTGATCATTCAGTGCAAGCCCTGTGTGATCTACAGTTTGTTAAGgtgagctgggaggactctgccatgagcttcatatactgaatccattgaaa Alignment from Exonerate_protein2genome GGGAAAATAAGTCACCTCCTCGCCCCTGTGGCCTGAATCACTCAGATTCTCTCAGTCGGAGCGACCGGATTGACGCCATGACGCCAACCTTGGGGAGCAGCAACAACCAGCTCAGCTCTTCCTTCCTTCAAGTCTACATCCCTGACTACTCAGTACGAGCCCTCTCTGACCTACAGTTCGTCAAG tacaaaatattcttcagtagtcctgtcagttctgccctcctttgttttagGAGACAACACGACACCTTCTTGCCCCTGTGCACTGAATCACTCAGATTCTCTTAGTCATGGGGACCAAACTGAAGCAATGACACCAACCCTGGCAAGCAGCAACAACAAGTTCAGCTCTTCATTTCTCCTAGTTTTTCTTCCTGATCATTCAGTGCAAGCCCTGTGTGATCTACAGTTTGTTAAGgtgagctgggaggactctgccatgagcttcatatactgaatccattgaaa Alignment from Exonerate_coding2genome tacaaaatattcttcagtagtcctgtcagttctgccctcctttgttttaggagacaacacgacaccttcttgcccctgtgcactgaatcactcagattctcttagtcatggggaccaaactgaagcaatgacaccaaccctggcaagcagcaacaacaagttcagctcttcatttctcctagtttttcttcctgatcattcagtgcaagccctgtgtgatctacagtttgttaaggtgagctgggaggactctgccatgagcttcatatactgaatccattgaaa Alignment from GeneWise GGGAAAATAAGTCACCTCCTCGCCCCTGTGGCCTGAATCACTCAGATTCTCTCAGTCGGAGCGACCGGATTGACGCCATGACGCCAACCTTGGGGAGCAGCAACAACCAGCTCAGCTCTTCCTTCCTTCAAGTCTACATCCCTGACTACTCAGTACGAGCCCTCTCTGACCTACAGTTCGTCAAG tacaaaatattcttcagtagtcctgtcagttctgccctcctttgttttagGAGACAACACGACACCTTCTTGCCCCTGTGCACTGAATCACTCAGATTCTCTTAGTCATGGGGACCAAACTGAAGCAATGACACCAACCCTGGCAAGCAGCAACAACAAGTTCAGCTCTTCATTTCTCCTAGTTTTTCTTCCTGATCATTCAGTGCAAGCCCTGTGTGATCTACAGTTTGTTAAGgtgagctgggaggactctgccatgagcttcatatactgaatccattgaaa #### Col17a1_ID10274_48 --> 2 - 1 Original Alignment gtCCTGATGTTCGCAGCTTCATCGTTGGCCCTCCAGGCCCTCCGGGGCCACAGGGACCACCTGGAGATGGTCACTTAAGGGAGAACTACAACTGGAGCAGCAACTCCTCAGCCAGAAGGGGCACTTCCTACAGCTCTTCCACGGGCACAGGGGGAACCAACGGAGGCTCCCTGGGTGAAGGTGGAGCCTATGGTGCAGGAGATGGGGGCCCCTATGGTACCGACATCGGCCCAGGCGGAGGCTATGGGGCAGCTGCAGGTGGTGGTATATATGGCACCAATGGTGACTCGTTCCGGGATGGCTTCACTGGAGACCTA---GATTACAACAAGCTGGCAGTGCGGGTGTCGGAGAGCATGCAGc attgatttgcacacacacattccttactaaacccctttcttttcctgcaggtCCTGATGTACGTAGCTTC---ACTGGCCCACCTGGTCCTCCTGGACCTCAGTGGCCACCAGGAGACAGT---TTAAGGGAGAACTACAACTGGAGCAGCAACACCTCAGCCAGATGTGGC------TATAGTTCATCGATGGGCACA---------AATGGAGGCTCACAAGGTGAAGGGGAAGCCTATGGTGCTGGGGATGACAGCCCATACGGCAGTGATATCAGCCCAGCTGGTGGCTTTAGTGCATCTGCAGGCAGTGGTATATATGGAATGAATGGAGAACCATTTCAGGATGGTTTCACTGGAGACCTGGACTACTACAACAAATTGGCAGTGAGAGTGCCAGAGAGCATGCAAcgtaagaagaatgtctaccacactgatagggatgccagtcatccattgaca Alignment from CESAR gtCCTGATGTTCGCAGCTTCATCGTTGGCCCTCCAGGCCCTCCGGGGCCACAGGGACCACCTGGAGATGGTCACTTAAGGGAGAACTACAACTGGAGCAGCAACTCCTCAGCCAGAAGGGGCACTTCCTACAGCTCTTCCACGGGCACAGGGGGAACCAACGGAGGCTCCCTGGGTGAAGGTGGAGCCTATGGTGCAGGAGATGGGGGCCCCTATGGTACCGACATCGGCCCAGGCGGAGGCTATGGGGCAGCTGCAGGTGGTGGTATATATGGCACCAATGGTGACTCGTTCCGGGATGGCTTCACTGGAGACCTAGATTAC---AACAAGCTGGCAGTGCGGGTGTCGGAGAGCATGCAGc attgatttgcacacacacattccttactaaacccctttcttttcctgcaggtCCTGATGTACGTAGCTTC---ACTGGCCCACCTGGTCCTCCTGGACCTCAGTGGCCACCAGGAGACAGT---TTAAGGGAGAACTACAACTGGAGCAGCAACACCTCAGCCAGATGTGGC------TATAGTTCATCGATGGGCACA---------AATGGAGGCTCACAAGGTGAAGGGGAAGCCTATGGTGCTGGGGATGACAGCCCATACGGCAGTGATATCAGCCCAGCTGGTGGCTTTAGTGCATCTGCAGGCAGTGGTATATATGGAATGAATGGAGAACCATTTCAGGATGGTTTCACTGGAGACCTGGACTACTACAACAAATTGGCAGTGAGAGTGCCAGAGAGCATGCAAcgtaagaagaatgtctaccacactgatagggatgccagtcatccattgaca Alignment from Spaln_aa2Genome GTCCTGATGTTCGCAGCTTCATCGTTGGCCCTCCAGGCCCTCCGGGGCCACAGGGACCACCTGGAGATGGTCACTTAAGGGAGAACTACAACTGGAGCAGCAACTCCTCAGCCAGAAGGGGCACTTCCTACAGCTCTTCCACGGGCACAGGGGGAACCAACGGAGGCTCCCTGGGTGAAGGTGGAGCCTATGGTGCAGGAGATGGGGGCCCCTATGGTACCGACATCGGCCCAGGCGGAGGCTATGGGGCAGCTGCAGGTGGTGGTATATATGGCACCAATGGTGACTCGTTCCGGGATGGCTTCACTGGAGACCTAGAT---TACAACAAGCTGGCAGTGCGGGTGTCGGAGAGCATGCAGC attgatttgcacacacacattccttactaaacccctttcttttcctgcagGTCCTGATGTACGTAGCTTCACT---GGCCCACCTGGTCCTCCTGGACCTCAGTGGCCACCAGGAGACAGT---TTAAGGGAGAACTACAACTGGAGCAGCAACACCTCAGCCAGATGTGGC------TATAGTTCATCGATG---------GGCACAAATGGAGGCTCACAAGGTGAAGGGGAAGCCTATGGTGCTGGGGATGACAGCCCATACGGCAGTGATATCAGCCCAGCTGGTGGCTTTAGTGCATCTGCAGGCAGTGGTATATATGGAATGAATGGAGAACCATTTCAGGATGGTTTCACTGGAGACCTGGACTACTACAACAAATTGGCAGTGAGAGTGCCAGAGAGCATGCAACgtaagaagaatgtctaccacactgatagggatgccagtcatccattgaca Alignment from Spaln_nt2Genome GTCCTGATGTTCGCAGCTTCATCGTTGGCCCTCCAGGCCCTCCGGGGCCACAGGGACCACCTGGAGATGGTCACTTAAGGGAGAACTACAACTGGAGCAGCAACTCCTCAGCCAGAAGGGGCACTTCCTACAGCTCTTCCACGGGCACAGGGGGAACCAACGGAGGCTCCCTGGGTGAAGGTGGAGCCTATGGTGCAGGAGATGGGGGCCCCTATGGTACCGACATCGGCCCAGGCGGAGGCTATGGGGCAGCTGCAGGTGGTGGTATATATGGCACCAATGGTGACTCGTTCCGGGATGGCTTCACTGGAGACCTAGATTACA---ACAAGCTGGCAGTGCGGGTGTCGGAGAGCATGCAGC attgatttgcacacacacattccttactaaacccctttcttttcctgcagGTCCTGATGTACGTAGCTTCA---CTGGCCCACCTGGTCCTCCTGGACCTCAGTGGCCACCAGGAGACAGT---TTAAGGGAGAACTACAACTGGAGCAGCAACACCTCAGCCAGATGTGG------CTATAGTTCATCGATGGGCACA---------AATGGAGGCTCACAAGGTGAAGGGGAAGCCTATGGTGCTGGGGATGACAGCCCATACGGCAGTGATATCAGCCCAGCTGGTGGCTTTAGTGCATCTGCAGGCAGTGGTATATATGGAATGAATGGAGAACCATTTCAGGATGGTTTCACTGGAGACCTGGACTACTACAACAAATTGGCAGTGAGAGTGCCAGAGAGCATGCAACgtaagaagaatgtctaccacactgatagggatgccagtcatccattgaca Alignment from Pairagon GTCCTGATGTTCGCAGCTTCATCGTTGGCCCTCCAGGCCCTCCGGGGCCACAGGGACCACCTGGAGATGGTCACTTAAGGGAGAACTACAACTGGAGCAGCAACTCCTCAGCCAGAAGGGGCACTTCCTACAGCTCTTCCACGGGCACAGGGGGAACCAACGGAGGCTCCCTGGGTGAAGGTGGAGCCTATGGTGCAGGAGATGGGGGCCCCTATGGTACCGACATCGGCCCAGGCGGAGGCTATGGGGCAGCTGCAGGTGGTGGTATATATGGCACCAATGGTGACTCGTTCCGGGATGGCTTCACTGGAGACCTAG---ATTACAACAAGCTGGCAGTGCGGGTGTCGGAGAGCATGCAGC attgatttgcacacacacattccttactaaacccctttcttttcctgcagGTCCTGATGTACGTAGCTTCA---CTGGCCCACCTGGTCCTCCTGGACCTCAGTGGCCACCAGGAGACAGT---TTAAGGGAGAACTACAACTGGAGCAGCAACACCTCAGCCAGATGTGG------CTATAGTTCATCGATGGGCACA---------AATGGAGGCTCACAAGGTGAAGGGGAAGCCTATGGTGCTGGGGATGACAGCCCATACGGCAGTGATATCAGCCCAGCTGGTGGCTTTAGTGCATCTGCAGGCAGTGGTATATATGGAATGAATGGAGAACCATTTCAGGATGGTTTCACTGGAGACCTGGACTACTACAACAAATTGGCAGTGAGAGTGCCAGAGAGCATGCAACgtaagaagaatgtctaccacactgatagggatgccagtcatccattgaca Alignment from Exonerate_protein2genome GTCCTGATGTTCGCAGCTTCATCGTTGGCCCTCCAGGCCCTCCGGGGCCACAGGGACCACCTGGAGATGGTCACTTAAGGGAGAACTACAACTGGAGCAGCAACTCCTCAGCCAGAAGGGGCACTTCCTACAGCTCTTCCACGGGCACAGGGGGAACCAACGGAGGCTCCCTGGGTGAAGGTGGAGCCTATGGTGCAGGAGATGGGGGCCCCTATGGTACCGACATCGGCCCAGGCGGAGGCTATGGGGCAGCTGCAGGTGGTGGTATATATGGCACCAATGGTGACTCGTTCCGGGATGGCTTCACTGGAGACCTAGAT---TACAACAAGCTGGCAGTGCGGGTGTCGGAGAGCATGCAGC attgatttgcacacacacattccttactaaacccctttcttttcctgcagGTCCTGATGTACGTAGCTTC---ACTGGCCCACCTGGTCCTCCTGGACCTCAGTGGCCACCAGGAGACAGT---TTAAGGGAGAACTACAACTGGAGCAGCAACACCTCAGCCAGATGTGGC------TATAGTTCATCGATG---------GGCACAAATGGAGGCTCACAAGGTGAAGGGGAAGCCTATGGTGCTGGGGATGACAGCCCATACGGCAGTGATATCAGCCCAGCTGGTGGCTTTAGTGCATCTGCAGGCAGTGGTATATATGGAATGAATGGAGAACCATTTCAGGATGGTTTCACTGGAGACCTGGACTACTACAACAAATTGGCAGTGAGAGTGCCAGAGAGCATGCAACgtaagaagaatgtctaccacactgatagggatgccagtcatccattgaca Alignment from Exonerate_coding2genome attgatttgcacacacacattccttactaaacccctttcttttcctgcaggtcctgatgtacgtagcttcactggcccacctggtcctcctggacctcagtggccaccaggagacagtttaagggagaactacaactggagcagcaacacctcagccagatgtggctatagttcatcgatgggcacaaatggaggctcacaaggtgaaggggaagcctatggtgctggggatgacagcccatacggcagtgatatcagcccagctggtggctttagtgcatctgcaggcagtggtatatatggaatgaatggagaaccatttcaggatggtttcactggagacctggactactacaacaaattggcagtgagagtgccagagagcatgcaacgtaagaagaatgtctaccacactgatagggatgccagtcatccattgaca Alignment from GeneWise GTCCTGATGTTCGCAGCTTCATCGTTGGCCCTCCAGGCCCTCCGGGGCCACAGGGACCACCTGGAGATGGTCACTTAAGGGAGAACTACAACTGGAGCAGCAACTCCTCAGCCAGAAGGGGCACTTCCTACAGCTCTTCCACGGGCACAGGGGGAACCAACGGAGGCTCCCTGGGTGAAGGTGGAGCCTATGGTGCAGGAGATGGGGGCCCCTATGGTACCGACATCGGCCCAGGCGGAGGCTATGGGGCAGCTGCAGGTGGTGGTATATATGGCACCAATGGTGACTCGTTCCGGGATGGCTTCACTGGAGACCTAGATTAC---AACAAGCTGGCAGTGCGGGTGTCGGAGAGCATGCAGC attgatttgcacacacacattccttactaaacccctttcttttcctgcagGTCCTGATGTACGTAGCTTC---ACTGGCCCACCTGGTCCTCCTGGACCTCAGTGGCCACCAGGAGACAGT---TTAAGGGAGAACTACAACTGGAGCAGCAACACCTCAGCCAGATGTGGC------TATAGTTCATCGATGGGCACA---------AATGGAGGCTCACAAGGTGAAGGGGAAGCCTATGGTGCTGGGGATGACAGCCCATACGGCAGTGATATCAGCCCAGCTGGTGGCTTTAGTGCATCTGCAGGCAGTGGTATATATGGAATGAATGGAGAACCATTTCAGGATGGTTTCACTGGAGACCTGGACTACTACAACAAATTGGCAGTGAGAGTGCCAGAGAGCATGCAACgtaagaagaatgtctaccacactgatagggatgccagtcatccattgaca #### Col17a1_ID10278_44 --> 2 - 1 Original Alignment caTCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAc gaagtgcatatttagtactacatgtgcagtgtggtcccctgtgccctcagctGCAGGATACAGTGCTGGCTTGTCCTCTGCTTCCTCTTCAGAAGATATCTTGGCCATGCTAGGAcgtaagtaacttctcacttcagctgataagcaacttcagcaaagtctcagg Alignment from CESAR caTCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAc gaagtgcatatttagtactacatgtgcagtgtggtcccctgtgccctcagctGCAGGATACAGTGCTGGCTTGTCCTCTGCTTCCTCTTCAGAAGATATCTTGGCCATGCTAGGAcgtaagtaacttctcacttcagctgataagcaacttcagcaaagtctcagg Alignment from Spaln_aa2Genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC gaagtgcatatttagtactacatgtgcagtgtggtcccctgtgccctcagCTGCAGGATACAGTGCTGGCTTGTCCTCTGCTTCCTCTTCAGAAGATATCTTGGCCATGCTAGGACgtaagtaacttctcacttcagctgataagcaacttcagcaaagtctcagg Alignment from Spaln_nt2Genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC gaagtgcatatttagtactacatgtgcagtgtggtcccctgtgccctcagCTGCAGGATACAGTGCTGGCTTGTCCTCTGCTTCCTCTTCAGAAGATATCTTGGCCATGCTAGGACgtaagtaacttctcacttcagctgataagcaacttcagcaaagtctcagg Alignment from Pairagon CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC gaagtgcatatttagtactacatgtgcagtgtggtcccctgtgccctcagCTGCAGGATACAGTGCTGGCTTGTCCTCTGCTTCCTCTTCAGAAGATATCTTGGCCATGCTAGGACgtaagtaacttctcacttcagctgataagcaacttcagcaaagtctcagg Alignment from Exonerate_protein2genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC gaagtgcatatttagtactacatgtgcagtgtggtcccctgtgccctcagCTGCAGGATACAGTGCTGGCTTGTCCTCTGCTTCCTCTTCAGAAGATATCTTGGCCATGCTAGGACgtaagtaacttctcacttcagctgataagcaacttcagcaaagtctcagg Alignment from Exonerate_coding2genome gaagtgcatatttagtactacatgtgcagtgtggtcccctgtgccctcagctgcaggatacagtgctggcttgtcctctgcttcctcttcagaagatatcttggccatgctaggacgtaagtaacttctcacttcagctgataagcaacttcagcaaagtctcagg Alignment from GeneWise CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC gaagtgcatatttagtactacatgtgcagtgtggtcccctgtgccctcagCTGCAGGATACAGTGCTGGCTTGTCCTCTGCTTCCTCTTCAGAAGATATCTTGGCCATGCTAGGACgtaagtaacttctcacttcagctgataagcaacttcagcaaagtctcagg #### Col17a1_ID10288_34 --> 2 - 1 Original Alignment agGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAg tagttgaggatagtgtaacatggcatatgcatttatttttcttcctttagaaGGATCCTCAACCATCACTGTCCCTGGGACTCCCGGACCTTCAGGTGCCATGGATCCTCCTGGGCCTCCAGGGACACTTagtaaacctattctactttttgccaacaaatcaacaatgatttacataaat Alignment from CESAR agGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAg tagttgaggatagtgtaacatggcatatgcatttatttttcttcctttagaaGGATCCTCAACCATCACTGTCCCTGGGACTCCCGGACCTTCAGGTGCCATGGATCCTCCTGGGCCTCCAGGGACACTTagtaaacctattctactttttgccaacaaatcaacaatgatttacataaat Alignment from Spaln_aa2Genome AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG tagttgaggatagtgtaacatggcatatgcatttatttttcttcctttagAAGGATCCTCAACCATCACTGTCCCTGGGACTCCCGGACCTTCAGGTGCCATGGATCCTCCTGGGCCTCCAGGGACACTTAgtaaacctattctactttttgccaacaaatcaacaatgatttacataaat Alignment from Spaln_nt2Genome AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG tagttgaggatagtgtaacatggcatatgcatttatttttcttcctttagAAGGATCCTCAACCATCACTGTCCCTGGGACTCCCGGACCTTCAGGTGCCATGGATCCTCCTGGGCCTCCAGGGACACTTAgtaaacctattctactttttgccaacaaatcaacaatgatttacataaat Alignment from Pairagon AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGC----------------------------------------------------- tagttgaggatagtgtaacatggcatatgcatttatttttcttcctttagAAGGATCCTCAACCATCACTGTCCCTGGGACTCCCGGACCTTCAGGTGCCATGGATCCTCCTGGGCCTCCAGGGACACTTAGTAAACCTATTCTACTTTTTGCCAACAAATCAACAATGATTTACATAAAT Alignment from Exonerate_protein2genome AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG tagttgaggatagtgtaacatggcatatgcatttatttttcttcctttagAAGGATCCTCAACCATCACTGTCCCTGGGACTCCCGGACCTTCAGGTGCCATGGATCCTCCTGGGCCTCCAGGGACACTTAgtaaacctattctactttttgccaacaaatcaacaatgatttacataaat Alignment from Exonerate_coding2genome tagttgaggatagtgtaacatggcatatgcatttatttttcttcctttagaaggatcctcaaccatcactgtccctgggactcccggaccttcaggtgccatggatcctcctgggcctccagggacacttagtaaacctattctactttttgccaacaaatcaacaatgatttacataaat Alignment from GeneWise AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG tagttgaggatagtgtaacatggcatatgcatttatttttcttcctttagAAGGATCCTCAACCATCACTGTCCCTGGGACTCCCGGACCTTCAGGTGCCATGGATCCTCCTGGGCCTCCAGGGACACTTAgtaaacctattctactttttgccaacaaatcaacaatgatttacataaat #### Col17a1_ID10290_32 --> 2 - 1 Original Alignment gaCTTCCTGGTAGCCCTGGCCGACCAGGGACTAAAg tcatccttctaactagttatgtcctgtcgtgttggatttacctttttcaggtCTCCCAGGTAGCCCTGGCCGACCTGGGACCAAAggtaaatttcattcccaggtttcctctgttaaatctaacacctttcccagt Alignment from CESAR gaCTTCCTGGTAGCCCTGGCCGACCAGGGACTAAAg tcatccttctaactagttatgtcctgtcgtgttggatttacctttttcaggtCTCCCAGGTAGCCCTGGCCGACCTGGGACCAAAggtaaatttcattcccaggtttcctctgttaaatctaacacctttcccagt Alignment from Spaln_aa2Genome GACTTCCTGGTAGCCCTGGCCGACCAGGGACTAAAG tcatccttctaactagttatgtcctgtcgtgttggatttacctttttcagGTCTCCCAGGTAGCCCTGGCCGACCTGGGACCAAAGgtaaatttcattcccaggtttcctctgttaaatctaacacctttcccagt Alignment from Spaln_nt2Genome GACTTCCTGGTAGCCCTGGCCGACCAGGGACTAAAG tcatccttctaactagttatgtcctgtcgtgttggatttacctttttcagGTCTCCCAGGTAGCCCTGGCCGACCTGGGACCAAAGgtaaatttcattcccaggtttcctctgttaaatctaacacctttcccagt Alignment from Pairagon GACTTCCTGGTAGCCCTGGCCGACCAGGGACTAAAG tcatccttctaactagttatgtcctgtcgtgttggatttacctttttcagGTCTCCCAGGTAGCCCTGGCCGACCTGGGACCAAAGgtaaatttcattcccaggtttcctctgttaaatctaacacctttcccagt Alignment from Exonerate_protein2genome GACTTCCTGGTAGCCCTGGCCGACCAGGGACTAAAG tcatccttctaactagttatgtcctgtcgtgttggatttacctttttcagGTCTCCCAGGTAGCCCTGGCCGACCTGGGACCAAAGgtaaatttcattcccaggtttcctctgttaaatctaacacctttcccagt Alignment from Exonerate_coding2genome tcatccttctaactagttatgtcctgtcgtgttggatttacctttttcaggtctcccaggtagccctggccgacctgggaccaaaggtaaatttcattcccaggtttcctctgttaaatctaacacctttcccagt Alignment from GeneWise --CTTCCTGGTAGCCCTGGCCGACCAGGGACTAAAG tcatccttctaactagttatgtcctgtcgtgttggatttacctttttcagGTCTCCCAGGTAGCCCTGGCCGACCTGGGACCAAAGgtaaatttcattcccaggtttcctctgttaaatctaacacctttcccagt #### Col17a1_ID10294_28 --> 2 - 1 Original Alignment ggGAGCCTGGCATTCGAGGTTTGCCTGGAGCTGTGGGTGAACCCGGAGCCAAAGGCGCAATGg aactgggaatgtgagattttcatgaccacataatgcctattcattaacaggaGAACTGGGAATCCGAGGTTCACTTGGAGCTGTGGGGGAGCCTGGGGGTAGAGGTGCCATGggtgagtacccaacctgaacagaatatctcttcaggtagcctaggtgccac Alignment from CESAR ggGAGCCTGGCATTCGAGGTTTGCCTGGAGCTGTGGGTGAACCCGGAGCCAAAGGCGCAATGg aactgggaatgtgagattttcatgaccacataatgcctattcattaacaggaGAACTGGGAATCCGAGGTTCACTTGGAGCTGTGGGGGAGCCTGGGGGTAGAGGTGCCATGggtgagtacccaacctgaacagaatatctcttcaggtagcctaggtgccac Alignment from Spaln_aa2Genome GGGAGCCTGGCATTCGAGGTTTGCCTGGAGCTGTGGGTGAACCCGGAGCCAAAGGCGCAATGG aactgggaatgtgagattttcatgaccacataatgcctattcattaacagGAGAACTGGGAATCCGAGGTTCACTTGGAGCTGTGGGGGAGCCTGGGGGTAGAGGTGCCATGGgtgagtacccaacctgaacagaatatctcttcaggtagcctaggtgccac Alignment from Spaln_nt2Genome GGGAGCCTGGCATTCGAGGTTTGCCTGGAGCTGTGGGTGAACCCGGAGCCAAAGGCGCAATGG aactgggaatgtgagattttcatgaccacataatgcctattcattaacagGAGAACTGGGAATCCGAGGTTCACTTGGAGCTGTGGGGGAGCCTGGGGGTAGAGGTGCCATGGgtgagtacccaacctgaacagaatatctcttcaggtagcctaggtgccac Alignment from Pairagon GGGAGCCTGGCATTCGAGGTTTGCCTGGAGCTGTGGGTGAACCCGGAGCCAAAGGCGCAATGG aactgggaatgtgagattttcatgaccacataatgcctattcattaacagGAGAACTGGGAATCCGAGGTTCACTTGGAGCTGTGGGGGAGCCTGGGGGTAGAGGTGCCATGGgtgagtacccaacctgaacagaatatctcttcaggtagcctaggtgccac Alignment from Exonerate_protein2genome GGGAGCCTGGCATTCGAGGTTTGCCTGGAGCTGTGGGTGAACCCGGAGCCAAAGGCGCAATGG aactgggaatgtgagattttcatgaccacataatgcctattcattaacagGAGAACTGGGAATCCGAGGTTCACTTGGAGCTGTGGGGGAGCCTGGGGGTAGAGGTGCCATGGgtgagtacccaacctgaacagaatatctcttcaggtagcctaggtgccac Alignment from Exonerate_coding2genome aactgggaatgtgagattttcatgaccacataatgcctattcattaacaggagaactgggaatccgaggttcacttggagctgtgggggagcctgggggtagaggtgccatgggtgagtacccaacctgaacagaatatctcttcaggtagcctaggtgccac Alignment from GeneWise GGGAGCCTGGCATTCGAGGTTTGCCTGGAGCTGTGGGTGAACCCGGAGCCAAAGGCGCAATGG aactgggaatgtgagattttcatgaccacataatgcctattcattaacagGAGAACTGGGAATCCGAGGTTCACTTGGAGCTGTGGGGGAGCCTGGGGGTAGAGGTGCCATGGgtgagtacccaacctgaacagaatatctcttcaggtagcctaggtgccac #### Col17a1_ID10303_19 --> 2 - 1 Original Alignment gtGACATGGGGAGTCAAGGACCTAAAg ttttttctttagtaaagtgaattctgattgcttatcttttggatttaaagggGACATGGGAAGTCAGGGACCTAAGggtaagtgttgcaaaaagcaattgtaggcctgttggtaacttgtgcacacg Alignment from CESAR gtGACATGGGGAGTCAAGGACCTAAAg ttttttctttagtaaagtgaattctgattgcttatcttttggatttaaagggGACATGGGAAGTCAGGGACCTAAGggtaagtgttgcaaaaagcaattgtaggcctgttggtaacttgtgcacacg Alignment from Spaln_aa2Genome GTGACATGGGGAGTCAAGGACCTAAAG ttttttctttagtaaagtgaattctgattgcttatcttttggatttaaagGGGACATGGGAAGTCAGGGACCTAAGGgtaagtgttgcaaaaagcaattgtaggcctgttggtaacttgtgcacacg Alignment from Spaln_nt2Genome GTGACATGGGGAGTCAAGGACCTAAAG ttttttctttagtaaagtgaattctgattgcttatcttttggatttaaagGGGACATGGGAAGTCAGGGACCTAAGGgtaagtgttgcaaaaagcaattgtaggcctgttggtaacttgtgcacacg Alignment from Pairagon GTGACATGGGGAGTCAAGGACCTAAAG ttttttctttagtaaagtgaattctgattgcttatcttttggatttaaagGGGACATGGGAAGTCAGGGACCTAAGGgtaagtgttgcaaaaagcaattgtaggcctgttggtaacttgtgcacacg Alignment from Exonerate_protein2genome GTCCTGGTCCAAAAGGTGACATGGGGAGTCAAGGACCTAAAG ttttttctttagtaaagtgaattctgattgcttatCTTTTGGATTTAAAGGGGACATGGGAAGTCAGGGACCTAAGGgtaagtgttgcaaaaagcaattgtaggcctgttggtaacttgtgcacacg Alignment from Exonerate_coding2genome GTCCTGGTCCAAAAGGTGACATGGGGAGTCAAGGACCTAAAG ttttttctttagtaaagtgaattctgattgcttatCTTTTGGATTTAAAGGGGACATGGGAAGTCAGGGACCTAAGGgtaagtgttgcaaaaagcaattgtaggcctgttggtaacttgtgcacacg Alignment from GeneWise ttttttctttagtaaagtgaattctgattgcttatcttttggatttaaaggggacatgggaagtcagggacctaagggtaagtgttgcaaaaagcaattgtaggcctgttggtaacttgtgcacacg #### Col17a1_ID10304_18 --> 2 - 1 Original Alignment ggAATCTCAGAGGAAGTCCTGGTCCAAAAg tttttggagtttctacaggacagggaattgtaaccctctctttccctaagggAATCCCAGTGGGAGTCCAAGTCCTAAGggttagtaagtagtacccccatctttcatggaatagataagtgaccgactc Alignment from CESAR ggAATCTCAGAGGAAGTCCTGGTCCAAAAg tttttggagtttctacaggacagggaattgtaaccctctctttccctaagggAATCCCAGTGGGAGTCCAAGTCCTAAGggttagtaagtagtacccccatctttcatggaatagataagtgaccgactc Alignment from Spaln_aa2Genome GGAATCTCAGAGGAAGTCCTGGTCCAAAAG tttttggagtttctacaggacagggaattgtaaccctctctttccctaagGGAATCCCAGTGGGAGTCCAAGTCCTAAGGgttagtaagtagtacccccatctttcatggaatagataagtgaccgactc Alignment from Spaln_nt2Genome GGAATCTCAGAGGAAGTCCTGGTCCAAAAG tttttggagtttctacaggacagggaattgtaaccctctctttccctaagGGAATCCCAGTGGGAGTCCAAGTCCTAAGGgttagtaagtagtacccccatctttcatggaatagataagtgaccgactc Alignment from Pairagon GGAATCTCAGAGGAAGTCCTGGTCCAAAAG tttttggagtttctacaggacagggaattgtaaccctctctttccctaagGGAATCCCAGTGGGAGTCCAAGTCCTAAGGgttagtaagtagtacccccatctttcatggaatagataagtgaccgactc Alignment from Exonerate_protein2genome tttttggagtttctacaggacagggaattgtaaccctctctttccctaagggaatcccagtgggagtccaagtcctaagggttagtaagtagtacccccatctttcatggaatagataagtgaccgactc Alignment from Exonerate_coding2genome tttttggagtttctacaggacagggaattgtaaccctctctttccctaagggaatcccagtgggagtccaagtcctaagggttagtaagtagtacccccatctttcatggaatagataagtgaccgactc Alignment from GeneWise tttttggagtttctacaggacagggaattgtaaccctctctttccctaagggaatcccagtgggagtccaagtcctaagggttagtaagtagtacccccatctttcatggaatagataagtgaccgactc #### Col17a1_ID10308_14 --> 2 - 1 Original Alignment ctTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATg atgaggatataaggacagtgcgcttaagtttctccttaattgtccttaagcaTCTTTCTCAGAAGATACATTGAAAAAGGAGAAGCAGGCAGCATATGCTGCTGACACCTGCCTCAAGGCAGATGTGAATggtgagttctgcactctagttgcttccttacacaatcatgtctagtatact Alignment from CESAR ctTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATg atgaggatataaggacagtgcgcttaagtttctccttaattgtccttaagcaTCTTTCTCAGAAGATACATTGAAAAAGGAGAAGCAGGCAGCATATGCTGCTGACACCTGCCTCAAGGCAGATGTGAATggtgagttctgcactctagttgcttccttacacaatcatgtctagtatact Alignment from Spaln_aa2Genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG atgaggatataaggacagtgcgcttaagtttctccttaattgtccttaagCATCTTTCTCAGAAGATACATTGAAAAAGGAGAAGCAGGCAGCATATGCTGCTGACACCTGCCTCAAGGCAGATGTGAATGgtgagttctgcactctagttgcttccttacacaatcatgtctagtatact Alignment from Spaln_nt2Genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG atgaggatataaggacagtgcgcttaagtttctccttaattgtccttaagCATCTTTCTCAGAAGATACATTGAAAAAGGAGAAGCAGGCAGCATATGCTGCTGACACCTGCCTCAAGGCAGATGTGAATGgtgagttctgcactctagttgcttccttacacaatcatgtctagtatact Alignment from Pairagon CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG atgaggatataaggacagtgcgcttaagtttctccttaattgtccttaagCATCTTTCTCAGAAGATACATTGAAAAAGGAGAAGCAGGCAGCATATGCTGCTGACACCTGCCTCAAGGCAGATGTGAATGgtgagttctgcactctagttgcttccttacacaatcatgtctagtatact Alignment from Exonerate_protein2genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG atgaggatataaggacagtgcgcttaagtttctccttaattgtccttaagCATCTTTCTCAGAAGATACATTGAAAAAGGAGAAGCAGGCAGCATATGCTGCTGACACCTGCCTCAAGGCAGATGTGAATGgtgagttctgcactctagttgcttccttacacaatcatgtctagtatact Alignment from Exonerate_coding2genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATGGAGACCTAAATACCGTGTCCACAAA atgaggatataaggacagtgcgcttaagtttctccttaattgtccttaagCATCTTTCTCAGAAGATACATTGAAAAAGGAGAAGCAGGCAGCATATGCTGCTGACACCTGCCTCAAGGCAGATGTGAATGGTGAGTTCTGCACTCTAGTTGCTTCcttacacaatcatgtctagtatact Alignment from GeneWise CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG atgaggatataaggacagtgcgcttaagtttctccttaattgtccttaagCATCTTTCTCAGAAGATACATTGAAAAAGGAGAAGCAGGCAGCATATGCTGCTGACACCTGCCTCAAGGCAGATGTGAATGgtgagttctgcactctagttgcttccttacacaatcatgtctagtatact #### Col17a1_ID10313_9 --> 2 - 1 Original Alignment tgTCCGGAACCTATGATTCAGCAATACTGGACACCAACTTTCCGCCCCACATGTGGTCCTCCACCTTGCCTGCAGGGTCCTCCCTGGGGACCTATCAGAACAACATAACAGCCCAGAGCACATCCCTCCTCAACACCAATGCCTACTCAACGGGATCAg gatgagtaagatgacttcttggtgaacattttgtttttgtttttgttcagtcTCCGGATCTTATGATTCAGCACTCTTGGACACAAATTTTCCACCCCACACATGGTCCGCCACCTTGCCTACTGGGTCCTCATTGGCAACATACCAGAATAACATAACAGCCCAAAGCACATCACTTCTGAACACCAATGCCTACTCAACTGGGTCTggtaagtgtggcggtgtcagcatcattggaatctgagctattcctagggcc Alignment from CESAR tgTCCGGAACCTATGATTCAGCAATACTGGACACCAACTTTCCGCCCCACATGTGGTCCTCCACCTTGCCTGCAGGGTCCTCCCTGGGGACCTATCAGAACAACATAACAGCCCAGAGCACATCCCTCCTCAACACCAATGCCTACTCAACGGGATCAg gatgagtaagatgacttcttggtgaacattttgtttttgtttttgttcagtcTCCGGATCTTATGATTCAGCACTCTTGGACACAAATTTTCCACCCCACACATGGTCCGCCACCTTGCCTACTGGGTCCTCATTGGCAACATACCAGAATAACATAACAGCCCAAAGCACATCACTTCTGAACACCAATGCCTACTCAACTGGGTCTggtaagtgtggcggtgtcagcatcattggaatctgagctattcctagggcc Alignment from Spaln_aa2Genome TGTCCGGAACCTATGATTCAGCAATACTGGACACCAACTTTCCGCCCCACATGTGGTCCTCCACCTTGCCTGCAGGGTCCTCCCTGGGGACCTATCAGAACAACATAACAGCCCAGAGCACATCCCTCCTCAACACCAATGCCTACTCAACGGGATCAG gatgagtaagatgacttcttggtgaacattttgtttttgtttttgttcagTCTCCGGATCTTATGATTCAGCACTCTTGGACACAAATTTTCCACCCCACACATGGTCCGCCACCTTGCCTACTGGGTCCTCATTGGCAACATACCAGAATAACATAACAGCCCAAAGCACATCACTTCTGAACACCAATGCCTACTCAACTGGGTCTGgtaagtgtggcggtgtcagcatcattggaatctgagctattcctagggcc Alignment from Spaln_nt2Genome TGTCCGGAACCTATGATTCAGCAATACTGGACACCAACTTTCCGCCCCACATGTGGTCCTCCACCTTGCCTGCAGGGTCCTCCCTGGGGACCTATCAGAACAACATAACAGCCCAGAGCACATCCCTCCTCAACACCAATGCCTACTCAACGGGATCAG gatgagtaagatgacttcttggtgaacattttgtttttgtttttgttcagTCTCCGGATCTTATGATTCAGCACTCTTGGACACAAATTTTCCACCCCACACATGGTCCGCCACCTTGCCTACTGGGTCCTCATTGGCAACATACCAGAATAACATAACAGCCCAAAGCACATCACTTCTGAACACCAATGCCTACTCAACTGGGTCTGgtaagtgtggcggtgtcagcatcattggaatctgagctattcctagggcc Alignment from Pairagon TGTCCGGAACCTATGATTCAGCAATACTGGACACCAACTTTCCGCCCCACATGTGGTCCTCCACCTTGCCTGCAGGGTCCTCCCTGGGGACCTATCAGAACAACATAACAGCCCAGAGCACATCCCTCCTCAACACCAATGCCTACTCAACGGGATCAG gatgagtaagatgacttcttggtgaacattttgtttttgtttttgttcagTCTCCGGATCTTATGATTCAGCACTCTTGGACACAAATTTTCCACCCCACACATGGTCCGCCACCTTGCCTACTGGGTCCTCATTGGCAACATACCAGAATAACATAACAGCCCAAAGCACATCACTTCTGAACACCAATGCCTACTCAACTGGGTCTGgtaagtgtggcggtgtcagcatcattggaatctgagctattcctagggcc Alignment from Exonerate_protein2genome TGTCCGGAACCTATGATTCAGCAATACTGGACACCAACTTTCCGCCCCACATGTGGTCCTCCACCTTGCCTGCAGGGTCCTCCCTGGGGACCTATCAGAACAACATAACAGCCCAGAGCACATCCCTCCTCAACACCAATGCCTACTCAACGGGATCAG gatgagtaagatgacttcttggtgaacattttgtttttgtttttgttcagTCTCCGGATCTTATGATTCAGCACTCTTGGACACAAATTTTCCACCCCACACATGGTCCGCCACCTTGCCTACTGGGTCCTCATTGGCAACATACCAGAATAACATAACAGCCCAAAGCACATCACTTCTGAACACCAATGCCTACTCAACTGGGTCTGgtaagtgtggcggtgtcagcatcattggaatctgagctattcctagggcc Alignment from Exonerate_coding2genome TCAGTGTCCGGAACCTATGATTCAGCAATACTGGACACCAACTTTCCGCCCCACATGTGGTCCTCCACCTTGCCTGCAGGGTCCTCCCTGGGGACCTATCAGAACAACATAACAGCCCAGAGCACATCCCTCCTCAACACCAATGCCTACTCAACGGGATCAG gatgagtaagatgacttcttggtgaacattttgtttttgtttttgtTCAGTCTCCGGATCTTATGATTCAGCACTCTTGGACACAAATTTTCCACCCCACACATGGTCCGCCACCTTGCCTACTGGGTCCTCATTGGCAACATACCAGAATAACATAACAGCCCAAAGCACATCACTTCTGAACACCAATGCCTACTCAACTGGGTCTGgtaagtgtggcggtgtcagcatcattggaatctgagctattcctagggcc Alignment from GeneWise TGTCCGGAACCTATGATTCAGCAATACTGGACACCAACTTTCCGCCCCACATGTGGTCCTCCACCTTGCCTGCAGGGTCCTCCCTGGGGACCTATCAGAACAACATAACAGCCCAGAGCACATCCCTCCTCAACACCAATGCCTACTCAACGGGATCAG gatgagtaagatgacttcttggtgaacattttgtttttgtttttgttcagTCTCCGGATCTTATGATTCAGCACTCTTGGACACAAATTTTCCACCCCACACATGGTCCGCCACCTTGCCTACTGGGTCCTCATTGGCAACATACCAGAATAACATAACAGCCCAAAGCACATCACTTCTGAACACCAATGCCTACTCAACTGGGTCTGgtaagtgtggcggtgtcagcatcattggaatctgagctattcctagggcc #### Col17a1_ID10315_7 --> 2 - 1 Original Alignment agAGCGAAATTCGAGTTCGGTTGCAGAGCGCGTCGCCATCCACCAGAt gaacagtccactggacatgttggacttgttatttgtgctcatgcctgtagaaAGCAAAATACGGGTCAGGTTGCAAAGTGCACCTTCATCTACCAGTtgtgagggattattgtactgcgattggaaacttctaaagccttctagagta Alignment from CESAR agAGCGAAATTCGAGTTCGGTTGCAGAGCGCGTCGCCATCCACCAGAt gaacagtccactggacatgttggacttgttatttgtgctcatgcctgtagaaAGCAAAATACGGGTCAGGTTGCAAAGTGCACCTTCATCTACCAGTtgtgagggattattgtactgcgattggaaacttctaaagccttctagagta Alignment from Spaln_aa2Genome AGAGCGAAATTCGAGTTCGGTTGCAGAGCGCGTCGCCATCCACCAGAT gaacagtccactggacatgttggacttgttatttgtgctcatgcctgtagAAAGCAAAATACGGGTCAGGTTGCAAAGTGCACCTTCATCTACCAGTTgtgagggattattgtactgcgattggaaacttctaaagccttctagagta Alignment from Spaln_nt2Genome AGAGCGAAATTCGAGTTCGGTTGCAGAGCGCGTCGCCATCCACCAGAT gaacagtccactggacatgttggacttgttatttgtgctcatgcctgtagAAAGCAAAATACGGGTCAGGTTGCAAAGTGCACCTTCATCTACCAGTTgtgagggattattgtactgcgattggaaacttctaaagccttctagagta Alignment from Pairagon AGAGCGAAATTCGAGTTCGGTTGCAGAGCGCGTCGCCATCCACCAGAT gaacagtccactggacatgttggacttgttatttgtgctcatgcctgtagAAAGCAAAATACGGGTCAGGTTGCAAAGTGCACCTTCATCTACCAGTTgtgagggattattgtactgcgattggaaacttctaaagccttctagagta Alignment from Exonerate_protein2genome AGAGCGAAATTCGAGTTCGGTTGCAGAGCGCGTCGCCATCCACCAGAT gaacagtccactggacatgttggacttgttatttgtgctcatgcctgtagAAAGCAAAATACGGGTCAGGTTGCAAAGTGCACCTTCATCTACCAGTTgtgagggattattgtactgcgattggaaacttctaaagccttctagagta Alignment from Exonerate_coding2genome gaacagtccactggacatgttggacttgttatttgtgctcatgcctgtagaaagcaaaatacgggtcaggttgcaaagtgcaccttcatctaccagttgtgagggattattgtactgcgattggaaacttctaaagccttctagagta Alignment from GeneWise gaacagtccactggacatgttggacttgttatttgtgctcatgcctgtagaaagcaaaatacgggtcaggttgcaaagtgcaccttcatctaccagttgtgagggattattgtactgcgattggaaacttctaaagccttctagagta #### Col17a1_ID10320_2 --> 2 - 1 Original Alignment ttGTCACGGAAACAGTAACGACAAGACTTACATCCCTACCGCCAa actgtatacagatgccctatgtcagggtatccatacgttgaatctttcagttGTTACGGAAACAGTAACAACAAGACTTACATCCCTACCACCAagtgaggccaaggctgtttaaaaactaactaagaacataacagagtactgg Alignment from CESAR ttGTCACGGAAACAGTAACGACAAGACTTACATCCCTACCGCCAa actgtatacagatgccctatgtcagggtatccatacgttgaatctttcagttGTTACGGAAACAGTAACAACAAGACTTACATCCCTACCACCAagtgaggccaaggctgtttaaaaactaactaagaacataacagagtactgg Alignment from Spaln_aa2Genome TTGTCACGGAAACAGTAACGACAAGACTTACATCCCTACCGCCAA actgtatacagatgccctatgtcagggtatccatacgttgaatctttcagTTGTTACGGAAACAGTAACAACAAGACTTACATCCCTACCACCAAgtgaggccaaggctgtttaaaaactaactaagaacataacagagtactgg Alignment from Spaln_nt2Genome TTGTCACGGAAACAGTAACGACAAGACTTACATCCCTACCGCCAA actgtatacagatgccctatgtcagggtatccatacgttgaatctttcagTTGTTACGGAAACAGTAACAACAAGACTTACATCCCTACCACCAAgtgaggccaaggctgtttaaaaactaactaagaacataacagagtactgg Alignment from Pairagon TTGTCACGGAAACAGTAACGACAAGACTTACATCCCTACCGCCAA actgtatacagatgccctatgtcagggtatccatacgttgaatctttcagTTGTTACGGAAACAGTAACAACAAGACTTACATCCCTACCACCAAgtgaggccaaggctgtttaaaaactaactaagaacataacagagtactgg Alignment from Exonerate_protein2genome TTGTCACGGAAACAGTAACGACAAGACTTACATCCCTACCGCCAA actgtatacagatgccctatgtcagggtatccatacgttgaatctttcagTTGTTACGGAAACAGTAACAACAAGACTTACATCCCTACCACCAAgtgaggccaaggctgtttaaaaactaactaagaacataacagagtactgg Alignment from Exonerate_coding2genome actgtatacagatgccctatgtcagggtatccatacgttgaatctttcagttgttacggaaacagtaacaacaagacttacatccctaccaccaagtgaggccaaggctgtttaaaaactaactaagaacataacagagtactgg Alignment from GeneWise TTGTCACGGAAACAGTAACGACAAGACTTACATCCCTACCGCCAA actgtatacagatgccctatgtcagggtatccatacgttgaatctttcagTTGTTACGGAAACAGTAACAACAAGACTTACATCCCTACCACCAAgtgaggccaaggctgtttaaaaactaactaagaacataacagagtactgg #### Coro1b_ID353_3 --> 0 - 1 Original Alignment GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAg aatgataccctctcttgatgattgacccgttttttacattttctccctagATCTGGCAGATCCCAGAGAATGGTTTGACC---CCACTGACAGAGCCTGTAGTTGTGCCTGAGGGGCATACAATTAAACGACATCTGGGTATTACTACTTGGCATCCTACTGCCCAAATTGTGATTCTTGGTGCTggtaagtttattatgcccagaccatgctctctactctagtttcagttcagc Alignment from CESAR GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC---AAGCGC---GTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAg aatgataccctctcttgatgattgacccgttttttacattttctccctagATCTGGCAGATCCCAGAGAATGGTTTGACC---CCACTGACAGAGCCTGTAGTTGTGCCTGAGGGGCATACAATTAAACGACATCTGGGTATTACTACTTGGCATCCTACTGCCCAAATTGTGATTCTTGGTGCTggtaagtttattatgcccagaccatgctctctactctagtttcagttcagc Alignment from Spaln_aa2Genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG aatgataccctctcttgatgattgacccgttttttacattttctccctagATCTGGCAGATCCCAGAGAATGGTTTG---ACCCCACTGACAGAGCCTGTAGTTGTGCCTGAGGGGCATACAATTAAACGACATCTGGGTATTACTACTTGGCATCCTACTGCCCAAATTGTGATTCTTGGTGCTGgtaagtttattatgcccagaccatgctctctactctagtttcagttcagc Alignment from Spaln_nt2Genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCA---AGCGCG---TGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG aatgataccctctcttgatgattgacccgttttttacattttctccctagATCTGGCAGATCCCAGAGAATGGTTTGA---CCCCACTGACAGAGCCTGTAGTTGTGCCTGAGGGGCATACAATTAAACGACATCTGGGTATTACTACTTGGCATCCTACTGCCCAAATTGTGATTCTTGGTGCTGgtaagtttattatgcccagaccatgctctctactctagtttcagttcagc Alignment from Pairagon GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATAC-------------CAAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG aatgataccctctcttgatgattgacccgttttttacattttctccctagATCTGGCAGATCCCAGAGAATGGTTTGA---CCCCACTGACAGAGCCTGTAGTTGTGCCTGAGGGGCATACAATTAAACGACATC-------TGGGTATTACTACTTGGCATCCTACTGCCCAAATTGTGATTCTTGGTGCTGgtaagtttattatgcccagaccatgctctctactctagtttcagttcagc Alignment from Exonerate_protein2genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG aatgataccctctcttgatgattgacccgttttttacattttctccctagATCTGGCAGATCCCAGAGAATGGTTTGACC---CCACTGACAGAGCCTGTAGTTGTGCCTGAGGGGCATACAATTAAACGACATCTGGGTATTACTACTTGGCATCCTACTGCCCAAATTGTGATTCTTGGTGCTGgtaagtttattatgcccagaccatgctctctactctagtttcagttcagc Alignment from Exonerate_coding2genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG aatgataccctctcttgatgattgacccgttttttacattttctccctagATCTGGCAGATCCCAGAGAATGGTTTGACC---CCACTGACAGAGCCTGTAGTTGTGCCTGAGGGGCATACAATTAAACGACATCTGGGTATTACTACTTGGCATCCTACTGCCCAAATTGTGATTCTTGGTGCTGgtaagtttattatgcccagaccatgctctctactctagtttcagttcagc Alignment from GeneWise GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG aatgataccctctcttgatgattgacccgttttttacattttctccctagATCTGGCAGATCCCAGAGAATGGTTTGACC---CCACTGACAGAGCCTGTAGTTGTGCCTGAGGGGCATACAATTAAACGACATCTGGGTATTACTACTTGGCATCCTACTGCCCAAATTGTGATTCTTGGTGCTGgtaagtttattatgcccagaccatgctctctactctagtttcagttcagc #### Coro1b_ID356_6 --> 0 - 0 Original Alignment GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG atttggggacaggcactgctgcatcgatctgtcgtcttctctcctcacagGAAAACCTTGAGAAAACCATGGCTTTGCAAGAACTGGATTCAAGCAATGAGGGTATTCTTCCGTTTTATGACCCTGACACTAGTGTTATCTATGTCTGTGGCAAGgtatggctgtatgagaaccatataataggtggatattgctagatctgtgg Alignment from CESAR GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG atttggggacaggcactgctgcatcgatctgtcgtcttctctcctcacagGAAAACCTTGAGAAAACCATGGCTTTGCAAGAACTGGATTCAAGCAATGAGGGTATTCTTCCGTTTTATGACCCTGACACTAGTGTTATCTATGTCTGTGGCAAGgtatggctgtatgagaaccatataataggtggatattgctagatctgtgg Alignment from Spaln_aa2Genome GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG atttggggacaggcactgctgcatcgatctgtcgtcttctctcctcacagGAAAACCTTGAGAAAACCATGGCTTTGCAAGAACTGGATTCAAGCAATGAGGGTATTCTTCCGTTTTATGACCCTGACACTAGTGTTATCTATGTCTGTGGCAAGgtatggctgtatgagaaccatataataggtggatattgctagatctgtgg Alignment from Spaln_nt2Genome GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG atttggggacaggcactgctgcatcgatctgtcgtcttctctcctcacagGAAAACCTTGAGAAAACCATGGCTTTGCAAGAACTGGATTCAAGCAATGAGGGTATTCTTCCGTTTTATGACCCTGACACTAGTGTTATCTATGTCTGTGGCAAGgtatggctgtatgagaaccatataataggtggatattgctagatctgtgg Alignment from Pairagon GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG atttggggacaggcactgctgcatcgatctgtcgtcttctctcctcacagGAAAACCTTGAGAAAACCATGGCTTTGCAAGAACTGGATTCAAGCAATGAGGGTATTCTTCCGTTTTATGACCCTGACACTAGTGTTATCTATGTCTGTGGCAAGgtatggctgtatgagaaccatataataggtggatattgctagatctgtgg Alignment from Exonerate_protein2genome GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG atttggggacaggcactgctgcatcgatctgtcgtcttctctcctcacagGAAAACCTTGAGAAAACCATGGCTTTGCAAGAACTGGATTCAAGCAATGAGGGTATTCTTCCGTTTTATGACCCTGACACTAGTGTTATCTATGTCTGTGGCAAGgtatggctgtatgagaaccatataataggtggatattgctagatctgtgg Alignment from Exonerate_coding2genome GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG atttggggacaggcactgctgcatcgatctgtcgtcttctctcctcacagGAAAACCTTGAGAAAACCATGGCTTTGCAAGAACTGGATTCAAGCAATGAGGGTATTCTTCCGTTTTATGACCCTGACACTAGTGTTATCTATGTCTGTGGCAAGgtatggctgtatgagaaccatataataggtggatattgctagatctgtgg Alignment from GeneWise GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG atttggggacaggcactgctgcatcgatctgtcgtcttctctcctcacagGAAAACCTTGAGAAAACCATGGCTTTGCAAGAACTGGATTCAAGCAATGAGGGTATTCTTCCGTTTTATGACCCTGACACTAGTGTTATCTATGTCTGTGGCAAGgtatggctgtatgagaaccatataataggtggatattgctagatctgtgg #### Cpeb3_ID7277_4 --> 2 - 1 Original Alignment ccAGGAGCTATGGGCGGAGACGAg tttgattgtaaagcaacgtctagatagtttccctttcctttcctttacagcgCGGAGCTATGGGCGGAGACAAggtaagtgtttcttagaacaggcttttcctgtcccattattatgacttgtc Alignment from CESAR ccAGGAGCTATGGGCGGAGACGAg tttgattgtaaagcaacgtctagatagtttccctttcctttcctttacagcgCGGAGCTATGGGCGGAGACAAggtaagtgtttcttagaacaggcttttcctgtcccattattatgacttgtc Alignment from Spaln_aa2Genome CCAGGAGCTATGGGCGGAGACGAG tttgattgtaaagcaacgtctagatagtttccctttcctttcctttacagCGCGGAGCTATGGGCGGAGACAAGgtaagtgtttcttagaacaggcttttcctgtcccattattatgacttgtc Alignment from Spaln_nt2Genome CCAGGAGCTATGGGCGGAGACGAG tttgattgtaaagcaacgtctagatagtttccctttcctttcctttacagCGCGGAGCTATGGGCGGAGACAAGgtaagtgtttcttagaacaggcttttcctgtcccattattatgacttgtc Alignment from Pairagon CCAGGAGCTATGGGCGGAGACGAG tttgattgtaaagcaacgtctagatagtttccctttcctttcctttacagCGCGGAGCTATGGGCGGAGACAAGgtaagtgtttcttagaacaggcttttcctgtcccattattatgacttgtc Alignment from Exonerate_protein2genome CCAGGAGCTATGGGCGGAGACGAG tttgattgtaaagcaacgtctagatagtttccctttcctttcctttacagCGCGGAGCTATGGGCGGAGACAAGgtaagtgtttcttagaacaggcttttcctgtcccattattatgacttgtc Alignment from Exonerate_coding2genome tttgattgtaaagcaacgtctagatagtttccctttcctttcctttacagcgcggagctatgggcggagacaaggtaagtgtttcttagaacaggcttttcctgtcccattattatgacttgtc Alignment from GeneWise tttgattgtaaagcaacgtctagatagtttccctttcctttcctttacagcgcggagctatgggcggagacaaggtaagtgtttcttagaacaggcttttcctgtcccattattatgacttgtc #### Cpn1_ID8873_7 --> 0 - 1 Original Alignment GTCCACCAGGGCATCAAGGGAATGGTGTTGGATGAGAACTCTAACAACCTCACGGGGGCTGTCATTTCCGTCACCGGCATCAACCACGACGTCACTTCAg tgctttcaagtgcgcagttctctacaaacaattctcattgtctctcctagGTACATCATGGCCTCCAAGGGATGGTTTTGGATGAAAACTCCAATACTCTTTCAGGGGCTGTGATTTCTGTCACTGGGATAAACCACGACATTGCTGCAggtgagtttgggttggttggccatagaggcagtgatatgtcagcccgctga Alignment from CESAR GTCCACCAGGGCATCAAGGGAATGGTGTTGGATGAGAACTCTAACAACCTCACGGGGGCTGTCATTTCCGTCACCGGCATCAACCACGACGTCACTTCAg tgctttcaagtgcgcagttctctacaaacaattctcattgtctctcctagGTACATCATGGCCTCCAAGGGATGGTTTTGGATGAAAACTCCAATACTCTTTCAGGGGCTGTGATTTCTGTCACTGGGATAAACCACGACATTGCTGCAggtgagtttgggttggttggccatagaggcagtgatatgtcagcccgctga Alignment from Spaln_aa2Genome GTCCACCAGGGCATCAAGGGAATGGTGTTGGATGAGAACTCTAACAACCTCACGGGGGCTGTCATTTCCGTCACCGGCATCAACCACGACGTCACTTCAG tgctttcaagtgcgcagttctctacaaacaattctcattgtctctcctagGTACATCATGGCCTCCAAGGGATGGTTTTGGATGAAAACTCCAATACTCTTTCAGGGGCTGTGATTTCTGTCACTGGGATAAACCACGACATTGCTGCAGgtgagtttgggttggttggccatagaggcagtgatatgtcagcccgctga Alignment from Spaln_nt2Genome GTCCACCAGGGCATCAAGGGAATGGTGTTGGATGAGAACTCTAACAACCTCACGGGGGCTGTCATTTCCGTCACCGGCATCAACCACGACGTCACTTCAG tgctttcaagtgcgcagttctctacaaacaattctcattgtctctcctagGTACATCATGGCCTCCAAGGGATGGTTTTGGATGAAAACTCCAATACTCTTTCAGGGGCTGTGATTTCTGTCACTGGGATAAACCACGACATTGCTGCAGgtgagtttgggttggttggccatagaggcagtgatatgtcagcccgctga Alignment from Pairagon GTCCACCAGGGCATCAAGGGAATGGTGTTGGATGAGAACTCTAACAACCTCACGGGGGCTGTCATTTCCGTCACCGGCATCAACCACGACGTCACTTCAG tgctttcaagtgcgcagttctctacaaacaattctcattgtctctcctagGTACATCATGGCCTCCAAGGGATGGTTTTGGATGAAAACTCCAATACTCTTTCAGGGGCTGTGATTTCTGTCACTGGGATAAACCACGACATTGCTGCAGgtgagtttgggttggttggccatagaggcagtgatatgtcagcccgctga Alignment from Exonerate_protein2genome GTCCACCAGGGCATCAAGGGAATGGTGTTGGATGAGAACTCTAACAACCTCACGGGGGCTGTCATTTCCGTCACCGGCATCAACCACGACGTCACTTCAG tgctttcaagtgcgcagttctctacaaacaattctcattgtctctcctagGTACATCATGGCCTCCAAGGGATGGTTTTGGATGAAAACTCCAATACTCTTTCAGGGGCTGTGATTTCTGTCACTGGGATAAACCACGACATTGCTGCAGgtgagtttgggttggttggccatagaggcagtgatatgtcagcccgctga Alignment from Exonerate_coding2genome tgctttcaagtgcgcagttctctacaaacaattctcattgtctctcctaggtacatcatggcctccaagggatggttttggatgaaaactccaatactctttcaggggctgtgatttctgtcactgggataaaccacgacattgctgcaggtgagtttgggttggttggccatagaggcagtgatatgtcagcccgctga Alignment from GeneWise GTCCACCAGGGCATCAAGGGAATGGTGTTGGATGAGAACTCTAACAACCTCACGGGGGCTGTCATTTCCGTCACCGGCATCAACCACGACGTCACTTCAG tgctttcaagtgcgcagttctctacaaacaattctcattgtctctcctagGTACATCATGGCCTCCAAGGGATGGTTTTGGATGAAAACTCCAATACTCTTTCAGGGGCTGTGATTTCTGTCACTGGGATAAACCACGACATTGCTGCAGgtgagtttgggttggttggccatagaggcagtgatatgtcagcccgctga #### Cpn1_ID8878_2 --> 2 - 0 Original Alignment tgGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG gtatgtatgcatctaaggacattcggagctgacgctttctctttccccagtgGAACCGGAAGTAAAGTATGTGGGAAACATGCATGGGAATAAAGTACTAGGGCACAGGCTACTTTTGCAGCTATCTGAATTCCTCTGCAAGGAATTTCAGAACCGAAACAAACGTATTTTGCGTCTAACCCAGGACACACAAATTCTCATCTTTCCCTCTATGAACCCTGATGGTTATGGGGTGGCAACTGCTCTAgtaaatagtggcggttggattgattcaaccagaacttgttcatatgattg Alignment from CESAR tgGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG gtatgtatgcatctaaggacattcggagctgacgctttctctttccccagtgGAACCGGAAGTAAAGTATGTGGGAAACATGCATGGGAATAAAGTACTAGGGCACAGGCTACTTTTGCAGCTATCTGAATTCCTCTGCAAGGAATTTCAGAACCGAAACAAACGTATTTTGCGTCTAACCCAGGACACACAAATTCTCATCTTTCCCTCTATGAACCCTGATGGTTATGGGGTGGCAACTGCTCTAgtaaatagtggcggttggattgattcaaccagaacttgttcatatgattg Alignment from Spaln_aa2Genome TGGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG gtatgtatgcatctaaggacattcggagctgacgctttctctttccccagTGGAACCGGAAGTAAAGTATGTGGGAAACATGCATGGGAATAAAGTACTAGGGCACAGGCTACTTTTGCAGCTATCTGAATTCCTCTGCAAGGAATTTCAGAACCGAAACAAACGTATTTTGCGTCTAACCCAGGACACACAAATTCTCATCTTTCCCTCTATGAACCCTGATGGTTATGGGGTGGCAACTGCTCTAgtaaatagtggcggttggattgattcaaccagaacttgttcatatgattg Alignment from Spaln_nt2Genome TGGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG gtatgtatgcatctaaggacattcggagctgacgctttctctttccccagTGGAACCGGAAGTAAAGTATGTGGGAAACATGCATGGGAATAAAGTACTAGGGCACAGGCTACTTTTGCAGCTATCTGAATTCCTCTGCAAGGAATTTCAGAACCGAAACAAACGTATTTTGCGTCTAACCCAGGACACACAAATTCTCATCTTTCCCTCTATGAACCCTGATGGTTATGGGGTGGCAACTGCTCTAgtaaatagtggcggttggattgattcaaccagaacttgttcatatgattg Alignment from Pairagon TGGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG gtatgtatgcatctaaggacattcggagctgacgctttctctttccccagTGGAACCGGAAGTAAAGTATGTGGGAAACATGCATGGGAATAAAGTACTAGGGCACAGGCTACTTTTGCAGCTATCTGAATTCCTCTGCAAGGAATTTCAGAACCGAAACAAACGTATTTTGCGTCTAACCCAGGACACACAAATTCTCATCTTTCCCTCTATGAACCCTGATGGTTATGGGGTGGCAACTGCTCTAgtaaatagtggcggttggattgattcaaccagaacttgttcatatgattg Alignment from Exonerate_protein2genome TGGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG gtatgtatgcatctaaggacattcggagctgacgctttctctttccccagTGGAACCGGAAGTAAAGTATGTGGGAAACATGCATGGGAATAAAGTACTAGGGCACAGGCTACTTTTGCAGCTATCTGAATTCCTCTGCAAGGAATTTCAGAACCGAAACAAACGTATTTTGCGTCTAACCCAGGACACACAAATTCTCATCTTTCCCTCTATGAACCCTGATGGTTATGGGGTGGCAACTGCTCTAgtaaatagtggcggttggattgattcaaccagaacttgttcatatgattg Alignment from Exonerate_coding2genome TGGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG gtatgtatgcatctaaggacattcggagctgacgctttctctttccccagTGGAACCGGAAGTAAAGTATGTGGGAAACATGCATGGGAATAAAGTACTAGGGCACAGGCTACTTTTGCAGCTATCTGAATTCCTCTGCAAGGAATTTCAGAACCGAAACAAACGTATTTTGCGTCTAACCCAGGACACACAAATTCTCATCTTTCCCTCTATGAACCCTGATGGTTATGGGGTGGCAACTGCTCTAgtaaatagtggcggttggattgattcaaccagaacttgttcatatgattg Alignment from GeneWise TGGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG gtatgtatgcatctaaggacattcggagctgacgctttctctttccccagTGGAACCGGAAGTAAAGTATGTGGGAAACATGCATGGGAATAAAGTACTAGGGCACAGGCTACTTTTGCAGCTATCTGAATTCCTCTGCAAGGAATTTCAGAACCGAAACAAACGTATTTTGCGTCTAACCCAGGACACACAAATTCTCATCTTTCCCTCTATGAACCCTGATGGTTATGGGGTGGCAACTGCTCTAgtaaatagtggcggttggattgattcaaccagaacttgttcatatgattg #### Cpsf7_ID2864_4 --> 1 - 1 Original Alignment aTATGCTGAGGTGGTGGTAGCCTCTGAAAATTCTGTCCACAAACTGCTGGAACTCTTACCAGGAAAAGTTCTTAATGGAGAAAAAGTAGATGTGAGGCCGGCCACCCGGCAGAACTTGTCACAGTTTGAGGCTCAGGCTCGGAAACGTGAGTGCGTCCGAGTCCCAAGAGGGg tagctgggatagatctcccctgattaattcactggctgttcttattctagaTATGCTGGGGTTGTGGTAGCCTCTGAAAATTCTGTCCACAAACTCCTGGAACTCTTACCAGGAAAAGTTCTCAATGGAGAAAAAGTAGATGTGAGGCCAGCCACTCGGCAGAACCTGTCTCAGTTTGAGGCTCAGGCCCGGAAACGCGAGTGCATAAGAGTACCAAGAGGGggtgggttcaggcccactaaatattagtgagactttttacccttccaactc Alignment from CESAR aTATGCTGAGGTGGTGGTAGCCTCTGAAAATTCTGTCCACAAACTGCTGGAACTCTTACCAGGAAAAGTTCTTAATGGAGAAAAAGTAGATGTGAGGCCGGCCACCCGGCAGAACTTGTCACAGTTTGAGGCTCAGGCTCGGAAACGTGAGTGCGTCCGAGTCCCAAGAGGGg tagctgggatagatctcccctgattaattcactggctgttcttattctagaTATGCTGGGGTTGTGGTAGCCTCTGAAAATTCTGTCCACAAACTCCTGGAACTCTTACCAGGAAAAGTTCTCAATGGAGAAAAAGTAGATGTGAGGCCAGCCACTCGGCAGAACCTGTCTCAGTTTGAGGCTCAGGCCCGGAAACGCGAGTGCATAAGAGTACCAAGAGGGggtgggttcaggcccactaaatattagtgagactttttacccttccaactc Alignment from Spaln_aa2Genome ATATGCTGAGGTGGTGGTAGCCTCTGAAAATTCTGTCCACAAACTGCTGGAACTCTTACCAGGAAAAGTTCTTAATGGAGAAAAAGTAGATGTGAGGCCGGCCACCCGGCAGAACTTGTCACAGTTTGAGGCTCAGGCTCGGAAACGTGAGTGCGTCCGAGTCCCAAGAGGGG tagctgggatagatctcccctgattaattcactggctgttcttattctagATATGCTGGGGTTGTGGTAGCCTCTGAAAATTCTGTCCACAAACTCCTGGAACTCTTACCAGGAAAAGTTCTCAATGGAGAAAAAGTAGATGTGAGGCCAGCCACTCGGCAGAACCTGTCTCAGTTTGAGGCTCAGGCCCGGAAACGCGAGTGCATAAGAGTACCAAGAGGGGgtgggttcaggcccactaaatattagtgagactttttacccttccaactc Alignment from Spaln_nt2Genome ATATGCTGAGGTGGTGGTAGCCTCTGAAAATTCTGTCCACAAACTGCTGGAACTCTTACCAGGAAAAGTTCTTAATGGAGAAAAAGTAGATGTGAGGCCGGCCACCCGGCAGAACTTGTCACAGTTTGAGGCTCAGGCTCGGAAACGTGAGTGCGTCCGAGTCCCAAGAGGGG tagctgggatagatctcccctgattaattcactggctgttcttattctagATATGCTGGGGTTGTGGTAGCCTCTGAAAATTCTGTCCACAAACTCCTGGAACTCTTACCAGGAAAAGTTCTCAATGGAGAAAAAGTAGATGTGAGGCCAGCCACTCGGCAGAACCTGTCTCAGTTTGAGGCTCAGGCCCGGAAACGCGAGTGCATAAGAGTACCAAGAGGGGgtgggttcaggcccactaaatattagtgagactttttacccttccaactc Alignment from Pairagon ATATGCTGAGGTGGTGGTAGCCTCTGAAAATTCTGTCCACAAACTGCTGGAACTCTTACCAGGAAAAGTTCTTAATGGAGAAAAAGTAGATGTGAGGCCGGCCACCCGGCAGAACTTGTCACAGTTTGAGGCTCAGGCTCGGAAACGTGAGTGCGTCCGAGTCCCAAGAGGGG tagctgggatagatctcccctgattaattcactggctgttcttattctagATATGCTGGGGTTGTGGTAGCCTCTGAAAATTCTGTCCACAAACTCCTGGAACTCTTACCAGGAAAAGTTCTCAATGGAGAAAAAGTAGATGTGAGGCCAGCCACTCGGCAGAACCTGTCTCAGTTTGAGGCTCAGGCCCGGAAACGCGAGTGCATAAGAGTACCAAGAGGGGgtgggttcaggcccactaaatattagtgagactttttacccttccaactc Alignment from Exonerate_protein2genome ATATGCTGAGGTGGTGGTAGCCTCTGAAAATTCTGTCCACAAACTGCTGGAACTCTTACCAGGAAAAGTTCTTAATGGAGAAAAAGTAGATGTGAGGCCGGCCACCCGGCAGAACTTGTCACAGTTTGAGGCTCAGGCTCGGAAACGTGAGTGCGTCCGAGTCCCAAGAGGGG tagctgggatagatctcccctgattaattcactggctgttcttattctagATATGCTGGGGTTGTGGTAGCCTCTGAAAATTCTGTCCACAAACTCCTGGAACTCTTACCAGGAAAAGTTCTCAATGGAGAAAAAGTAGATGTGAGGCCAGCCACTCGGCAGAACCTGTCTCAGTTTGAGGCTCAGGCCCGGAAACGCGAGTGCATAAGAGTACCAAGAGGGGgtgggttcaggcccactaaatattagtgagactttttacccttccaactc Alignment from Exonerate_coding2genome ATATGCTGAGGTGGTGGTAGCCTCTGAAAATTCTGTCCACAAACTGCTGGAACTCTTACCAGGAAAAGTTCTTAATGGAGAAAAAGTAGATGTGAGGCCGGCCACCCGGCAGAACTTGTCACAGTTTGAGGCTCAGGCTCGGAAACGTGAGTGCGTCCGAGTCCCAAGAGGGG tagctgggatagatctcccctgattaattcactggctgttcttattctagATATGCTGGGGTTGTGGTAGCCTCTGAAAATTCTGTCCACAAACTCCTGGAACTCTTACCAGGAAAAGTTCTCAATGGAGAAAAAGTAGATGTGAGGCCAGCCACTCGGCAGAACCTGTCTCAGTTTGAGGCTCAGGCCCGGAAACGCGAGTGCATAAGAGTACCAAGAGGGGgtgggttcaggcccactaaatattagtgagactttttacccttccaactc Alignment from GeneWise ATATGCTGAGGTGGTGGTAGCCTCTGAAAATTCTGTCCACAAACTGCTGGAACTCTTACCAGGAAAAGTTCTTAATGGAGAAAAAGTAGATGTGAGGCCGGCCACCCGGCAGAACTTGTCACAGTTTGAGGCTCAGGCTCGGAAACGTGAGTGCGTCCGAGTCCCAAGAGGGG tagctgggatagatctcccctgattaattcactggctgttcttattctagATATGCTGGGGTTGTGGTAGCCTCTGAAAATTCTGTCCACAAACTCCTGGAACTCTTACCAGGAAAAGTTCTCAATGGAGAAAAAGTAGATGTGAGGCCAGCCACTCGGCAGAACCTGTCTCAGTTTGAGGCTCAGGCCCGGAAACGCGAGTGCATAAGAGTACCAAGAGGGGgtgggttcaggcccactaaatattagtgagactttttacccttccaactc #### Crtac1_ID8457_14 --> 2 - 1 Original Alignment acACCAATGAATGCATCCAGTTCCCATTTGTGTGCCCTCGAGACAAACCCGTATGTGTCAACACCTATGGAAGCTACAGGTGCCGGACCAATAAAAGATGCAATCGGGGCTATGAACCCAATGAAGACGGCACAGCCTGTGTGg ccatcatccaatggtatctacgtatggttgattctcttcttactcttcagatACCAATGAATGCATCCAGTTCCCATTTGTGTGCCCTCGAGACAGGCCTGTGTGTGTAAACCCCTATGGCAGCTACAGATGTCAGACCAATAAAAGATGTAATCAGGGATATGAACCCAATGAAGATGGCACAGCTTGTGTGggtaaatagaatccttcaaacctcatttacatgaaatgtattcatgtgtat Alignment from CESAR acACCAATGAATGCATCCAGTTCCCATTTGTGTGCCCTCGAGACAAACCCGTATGTGTCAACACCTATGGAAGCTACAGGTGCCGGACCAATAAAAGATGCAATCGGGGCTATGAACCCAATGAAGACGGCACAGCCTGTGTGg ccatcatccaatggtatctacgtatggttgattctcttcttactcttcagatACCAATGAATGCATCCAGTTCCCATTTGTGTGCCCTCGAGACAGGCCTGTGTGTGTAAACCCCTATGGCAGCTACAGATGTCAGACCAATAAAAGATGTAATCAGGGATATGAACCCAATGAAGATGGCACAGCTTGTGTGggtaaatagaatccttcaaacctcatttacatgaaatgtattcatgtgtat Alignment from Spaln_aa2Genome ACACCAATGAATGCATCCAGTTCCCATTTGTGTGCCCTCGAGACAAACCCGTATGTGTCAACACCTATGGAAGCTACAGGTGCCGGACCAATAAAAGATGCAATCGGGGCTATGAACCCAATGAAGACGGCACAGCCTGTGTGG ccatcatccaatggtatctacgtatggttgattctcttcttactcttcagATACCAATGAATGCATCCAGTTCCCATTTGTGTGCCCTCGAGACAGGCCTGTGTGTGTAAACCCCTATGGCAGCTACAGATGTCAGACCAATAAAAGATGTAATCAGGGATATGAACCCAATGAAGATGGCACAGCTTGTGTGGgtaaatagaatccttcaaacctcatttacatgaaatgtattcatgtgtat Alignment from Spaln_nt2Genome ACACCAATGAATGCATCCAGTTCCCATTTGTGTGCCCTCGAGACAAACCCGTATGTGTCAACACCTATGGAAGCTACAGGTGCCGGACCAATAAAAGATGCAATCGGGGCTATGAACCCAATGAAGACGGCACAGCCTGTGTGG ccatcatccaatggtatctacgtatggttgattctcttcttactcttcagATACCAATGAATGCATCCAGTTCCCATTTGTGTGCCCTCGAGACAGGCCTGTGTGTGTAAACCCCTATGGCAGCTACAGATGTCAGACCAATAAAAGATGTAATCAGGGATATGAACCCAATGAAGATGGCACAGCTTGTGTGGgtaaatagaatccttcaaacctcatttacatgaaatgtattcatgtgtat Alignment from Pairagon ACACCAATGAATGCATCCAGTTCCCATTTGTGTGCCCTCGAGACAAACCCGTATGTGTCAACACCTATGGAAGCTACAGGTGCCGGACCAATAAAAGATGCAATCGGGGCTATGAACCCAATGAAGACGGCACAGCCTGTGTGG ccatcatccaatggtatctacgtatggttgattctcttcttactcttcagATACCAATGAATGCATCCAGTTCCCATTTGTGTGCCCTCGAGACAGGCCTGTGTGTGTAAACCCCTATGGCAGCTACAGATGTCAGACCAATAAAAGATGTAATCAGGGATATGAACCCAATGAAGATGGCACAGCTTGTGTGGgtaaatagaatccttcaaacctcatttacatgaaatgtattcatgtgtat Alignment from Exonerate_protein2genome ACACCAATGAATGCATCCAGTTCCCATTTGTGTGCCCTCGAGACAAACCCGTATGTGTCAACACCTATGGAAGCTACAGGTGCCGGACCAATAAAAGATGCAATCGGGGCTATGAACCCAATGAAGACGGCACAGCCTGTGTGG ccatcatccaatggtatctacgtatggttgattctcttcttactcttcagATACCAATGAATGCATCCAGTTCCCATTTGTGTGCCCTCGAGACAGGCCTGTGTGTGTAAACCCCTATGGCAGCTACAGATGTCAGACCAATAAAAGATGTAATCAGGGATATGAACCCAATGAAGATGGCACAGCTTGTGTGGgtaaatagaatccttcaaacctcatttacatgaaatgtattcatgtgtat Alignment from Exonerate_coding2genome ACACCAATGAATGCATCCAGTTCCCATTTGTGTGCCCTCGAGACAAACCCGTATGTGTCAACACCTATGGAAGCTACAGGTGCCGGACCAATAAAAGATGCAATCGGGGCTATGAACCCAATGAAGACGGCACAGCCTGTGTGG ccatcatccaatggtatctacgtatggttgattctcttcttactcttcagATACCAATGAATGCATCCAGTTCCCATTTGTGTGCCCTCGAGACAGGCCTGTGTGTGTAAACCCCTATGGCAGCTACAGATGTCAGACCAATAAAAGATGTAATCAGGGATATGAACCCAATGAAGATGGCACAGCTTGTGTGGgtaaatagaatccttcaaacctcatttacatgaaatgtattcatgtgtat Alignment from GeneWise ACACCAATGAATGCATCCAGTTCCCATTTGTGTGCCCTCGAGACAAACCCGTATGTGTCAACACCTATGGAAGCTACAGGTGCCGGACCAATAAAAGATGCAATCGGGGCTATGAACCCAATGAAGACGGCACAGCCTGTGTGG ccatcatccaatggtatctacgtatggttgattctcttcttactcttcagATACCAATGAATGCATCCAGTTCCCATTTGTGTGCCCTCGAGACAGGCCTGTGTGTGTAAACCCCTATGGCAGCTACAGATGTCAGACCAATAAAAGATGTAATCAGGGATATGAACCCAATGAAGATGGCACAGCTTGTGTGGgtaaatagaatccttcaaacctcatttacatgaaatgtattcatgtgtat #### Crtac1_ID8458_13 --> 0 - 1 Original Alignment TGCGGCCAAGGATTCTCCCAGCAGGACAATGGCCATTGCATGg gcatttcaatgacacctgtacaagagttcaggaggcacctttctccccagTGTGGACAGGGATTCTCCCAGCATGACAATGGCCATTGTATGggtgtggtggccatcacaggggtgactaagtaggaggttctacacgggcct Alignment from CESAR TGCGGCCAAGGATTCTCCCAGCAGGACAATGGCCATTGCATGg gcatttcaatgacacctgtacaagagttcaggaggcacctttctccccagTGTGGACAGGGATTCTCCCAGCATGACAATGGCCATTGTATGggtgtggtggccatcacaggggtgactaagtaggaggttctacacgggcct Alignment from Spaln_aa2Genome TGCGGCCAAGGATTCTCCCAGCAGGACAATGGCCATTGCATGG gcatttcaatgacacctgtacaagagttcaggaggcacctttctccccagTGTGGACAGGGATTCTCCCAGCATGACAATGGCCATTGTATGGgtgtggtggccatcacaggggtgactaagtaggaggttctacacgggcct Alignment from Spaln_nt2Genome TGCGGCCAAGGATTCTCCCAGCAGGACAATGGCCATTGCATGG gcatttcaatgacacctgtacaagagttcaggaggcacctttctccccagTGTGGACAGGGATTCTCCCAGCATGACAATGGCCATTGTATGGgtgtggtggccatcacaggggtgactaagtaggaggttctacacgggcct Alignment from Pairagon TGCGGCCAAGGATTCTCCCAGCAGGACAATGGCCATTGCATGG gcatttcaatgacacctgtacaagagttcaggaggcacctttctccccagTGTGGACAGGGATTCTCCCAGCATGACAATGGCCATTGTATGGgtgtggtggccatcacaggggtgactaagtaggaggttctacacgggcct Alignment from Exonerate_protein2genome TGCGGCCAAGGATTCTCCCAGCAGGACAATGGCCATTGCATGG gcatttcaatgacacctgtacaagagttcaggaggcacctttctccccagTGTGGACAGGGATTCTCCCAGCATGACAATGGCCATTGTATGGgtgtggtggccatcacaggggtgactaagtaggaggttctacacgggcct Alignment from Exonerate_coding2genome TGCGGCCAAGGATTCTCCCAGCAGGACAATGGCCATTGCATGG gcatttcaatgacacctgtacaagagttcaggaggcacctttctccccagTGTGGACAGGGATTCTCCCAGCATGACAATGGCCATTGTATGGgtgtggtggccatcacaggggtgactaagtaggaggttctacacgggcct Alignment from GeneWise TGCGGCCAAGGATTCTCCCAGCAGGACAATGGCCATTGCATGG gcatttcaatgacacctgtacaagagttcaggaggcacctttctccccagTGTGGACAGGGATTCTCCCAGCATGACAATGGCCATTGTATGGgtgtggtggccatcacaggggtgactaagtaggaggttctacacgggcct #### Csf2ra_ID13430_10 --> 1 - 0 Original Alignment gTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ttaccgcacgcatactacactacctgcatgtgcctggggttccgctgcaggTTGGAGGTGACACGCCGTCTCTTCCCGCCAATCCCAGGAATTAGGGACAAGGTGTCTGATGATGTGCGAGTGAACCCTGAGgtgagtagccataggcaactagagattcaaatgggactgggccaaaagag Alignment from CESAR gTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ttaccgcacgcatactacactacctgcatgtgcctggggttccgctgcaggTTGGAGGTGACACGCCGTCTCTTCCCGCCAATCCCAGGAATTAGGGACAAGGTGTCTGATGATGTGCGAGTGAACCCTGAGgtgagtagccataggcaactagagattcaaatgggactgggccaaaagag Alignment from Spaln_aa2Genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ttaccgcacgcatactacactacctgcatgtgcctggggttccgctgcagGTTGGAGGTGACACGCCGTCTCTTCCCGCCAATCCCAGGAATTAGGGACAAGGTGTCTGATGATGTGCGAGTGAACCCTGAGgtgagtagccataggcaactagagattcaaatgggactgggccaaaagag Alignment from Spaln_nt2Genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ttaccgcacgcatactacactacctgcatgtgcctggggttccgctgcagGTTGGAGGTGACACGCCGTCTCTTCCCGCCAATCCCAGGAATTAGGGACAAGGTGTCTGATGATGTGCGAGTGAACCCTGAGgtgagtagccataggcaactagagattcaaatgggactgggccaaaagag Alignment from Pairagon GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ttaccgcacgcatactacactacctgcatgtgcctggggttccgctgcagGTTGGAGGTGACACGCCGTCTCTTCCCGCCAATCCCAGGAATTAGGGACAAGGTGTCTGATGATGTGCGAGTGAACCCTGAGgtgagtagccataggcaactagagattcaaatgggactgggccaaaagag Alignment from Exonerate_protein2genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ttaccgcacgcatactacactacctgcatgtgcctggggttccgctgcagGTTGGAGGTGACACGCCGTCTCTTCCCGCCAATCCCAGGAATTAGGGACAAGGTGTCTGATGATGTGCGAGTGAACCCTGAGgtgagtagccataggcaactagagattcaaatgggactgggccaaaagag Alignment from Exonerate_coding2genome GCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAGGTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG CCGCACGCATACTACACTACCTGCATGTGCCTGGGGTTCCGCTGC---AGGTTGGAGGTGACACGCCGTCTCTTCCCGCCAATCCCAGGAATTAGGGACAAGGTGTCTGATGATGTGCGAGTGAACCCTGAGgtgagtagccataggcaactagagattcaaatgggactgggccaaaagag Alignment from GeneWise GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAGACCCTCAGGAAGGACCTCCTGCAGCCC ttaccgcacgcatactacactacctgcatgtgcctggggttccgctgcagGTTGGAGGTGACACGCCGTCTCTTCCCGCCAATCCCAGGAATTAGGGACAAGGTGTCTGATGATGTGCGAGTGAACCCTGAGGTGAGTAGCCATAGGCAACTAGAGATTcaaatgggactgggccaaaagag #### Csf2ra_ID13431_9 --> 2 - 2 Original Alignment agGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGag caacaagcagccggcttcctgagtgccagccttacttggtgtcccttcagatGCAGATGACATGCGGGTGCCTGGCACACTCCTCTACACAGTAACTGCTTGTGCAGTCTTACTATGTGCACTAGTGCTTGGAGTGACTTGCAGGaggtgagtctaagggcccatatcatgaataagttatgcaaacggttggttta Alignment from CESAR agGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGag caacaagcagccggcttcctgagtgccagccttacttggtgtcccttcagatGCAGATGACATGCGGGTGCCTGGCACACTCCTCTACACAGTAACTGCTTGTGCAGTCTTACTATGTGCACTAGTGCTTGGAGTGACTTGCAGGaggtgagtctaagggcccatatcatgaataagttatgcaaacggttggttta Alignment from Spaln_aa2Genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG caacaagcagccggcttcctgagtgccagccttacttggtgtcccttcagATGCAGATGACATGCGGGTGCCTGGCACACTCCTCTACACAGTAACTGCTTGTGCAGTCTTACTATGTGCACTAGTGCTTGGAGTGACTTGCAGGAGgtgagtctaagggcccatatcatgaataagttatgcaaacggttggttta Alignment from Spaln_nt2Genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG caacaagcagccggcttcctgagtgccagccttacttggtgtcccttcagATGCAGATGACATGCGGGTGCCTGGCACACTCCTCTACACAGTAACTGCTTGTGCAGTCTTACTATGTGCACTAGTGCTTGGAGTGACTTGCAGGAGgtgagtctaagggcccatatcatgaataagttatgcaaacggttggttta Alignment from Pairagon AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG caacaagcagccggcttcctgagtgccagccttacttggtgtcccttcagATGCAGATGACATGCGGGTGCCTGGCACACTCCTCTACACAGTAACTGCTTGTGCAGTCTTACTATGTGCACTAGTGCTTGGAGTGACTTGCAGGAGgtgagtctaagggcccatatcatgaataagttatgcaaacggttggttta Alignment from Exonerate_protein2genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG caacaagcagccggcttcctgagtgccagccttacttggtgtcccttcagATGCAGATGACATGCGGGTGCCTGGCACACTCCTCTACACAGTAACTGCTTGTGCAGTCTTACTATGTGCACTAGTGCTTGGAGTGACTTGCAGGAGgtgagtctaagggcccatatcatgaataagttatgcaaacggttggttta Alignment from Exonerate_coding2genome caacaagcagccggcttcctgagtgccagccttacttggtgtcccttcagatgcagatgacatgcgggtgcctggcacactcctctacacagtaactgcttgtgcagtcttactatgtgcactagtgcttggagtgacttgcaggaggtgagtctaagggcccatatcatgaataagttatgcaaacggttggttta Alignment from GeneWise AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG caacaagcagccggcttcctgagtgccagccttacttggtgtcccttcagATGCAGATGACATGCGGGTGCCTGGCACACTCCTCTACACAGTAACTGCTTGTGCAGTCTTACTATGTGCACTAGTGCTTGGAGTGACTTGCAGGAGgtgagtctaagggcccatatcatgaataagttatgcaaacggttggttta #### Csf2ra_ID13435_5 --> 1 - 1 Original Alignment gGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCg ccactatcttgggctctcagtcactctatcccttctctgtgtgacccaagaGGTCATGATGTGCCACACTCCATGGCTGATCCCGGGGATGATGTGATGACCCTGTGCATTGCGAATGATTTATCCTTACTGGGGAGTGAGGCCTATTTAGTAGTCACTGGCCGAAGTGGGGCAGGGCCTGTGTGGTTCTTGGATGATGTGGTTGCTACAAAGGCACTGggtgaggtcttgttctttggtgcatatacaatcacagggtggatatggagc Alignment from CESAR gGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCg ccactatcttgggctctcagtcactctatcccttctctgtgtgacccaagaGGTCATGATGTGCCACACTCCATGGCTGATCCCGGGGATGATGTGATGACCCTGTGCATTGCGAATGATTTATCCTTACTGGGGAGTGAGGCCTATTTAGTAGTCACTGGCCGAAGTGGGGCAGGGCCTGTGTGGTTCTTGGATGATGTGGTTGCTACAAAGGCACTGggtgaggtcttgttctttggtgcatatacaatcacagggtggatatggagc Alignment from Spaln_aa2Genome GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ccactatcttgggctctcagtcactctatcccttctctgtgtgacccaagAGGTCATGATGTGCCACACTCCATGGCTGATCCCGGGGATGATGTGATGACCCTGTGCATTGCGAATGATTTATCCTTACTGGGGAGTGAGGCCTATTTAGTAGTCACTGGCCGAAGTGGGGCAGGGCCTGTGTGGTTCTTGGATGATGTGGTTGCTACAAAGGCACTGGgtgaggtcttgttctttggtgcatatacaatcacagggtggatatggagc Alignment from Spaln_nt2Genome GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ccactatcttgggctctcagtcactctatcccttctctgtgtgacccaagAGGTCATGATGTGCCACACTCCATGGCTGATCCCGGGGATGATGTGATGACCCTGTGCATTGCGAATGATTTATCCTTACTGGGGAGTGAGGCCTATTTAGTAGTCACTGGCCGAAGTGGGGCAGGGCCTGTGTGGTTCTTGGATGATGTGGTTGCTACAAAGGCACTGGgtgaggtcttgttctttggtgcatatacaatcacagggtggatatggagc Alignment from Pairagon GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ccactatcttgggctctcagtcactctatcccttctctgtgtgacccaagAGGTCATGATGTGCCACACTCCATGGCTGATCCCGGGGATGATGTGATGACCCTGTGCATTGCGAATGATTTATCCTTACTGGGGAGTGAGGCCTATTTAGTAGTCACTGGCCGAAGTGGGGCAGGGCCTGTGTGGTTCTTGGATGATGTGGTTGCTACAAAGGCACTGGgtgaggtcttgttctttggtgcatatacaatcacagggtggatatggagc Alignment from Exonerate_protein2genome GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ccactatcttgggctctcagtcactctatcccttctctgtgtgacccaagAGGTCATGATGTGCCACACTCCATGGCTGATCCCGGGGATGATGTGATGACCCTGTGCATTGCGAATGATTTATCCTTACTGGGGAGTGAGGCCTATTTAGTAGTCACTGGCCGAAGTGGGGCAGGGCCTGTGTGGTTCTTGGATGATGTGGTTGCTACAAAGGCACTGGgtgaggtcttgttctttggtgcatatacaatcacagggtggatatggagc Alignment from Exonerate_coding2genome GGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ccactatcttgggctctcagtcactctatcccttctctgtgtgacccaagaGGTCATGATGTGCCACACTCCATGGCTGATCCCGGGGATGATGTGATGACCCTGTGCATTGCGAATGATTTATCCTTACTGGGGAGTGAGGCCTATTTAGTAGTCACTGGCCGAAGTGGGGCAGGGCCTGTGTGGTTCTTGGATGATGTGGTTGCTACAAAGGCACTGGgtgaggtcttgttctttggtgcatatacaatcacagggtggatatggagc Alignment from GeneWise GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ccactatcttgggctctcagtcactctatcccttctctgtgtgacccaagAGGTCATGATGTGCCACACTCCATGGCTGATCCCGGGGATGATGTGATGACCCTGTGCATTGCGAATGATTTATCCTTACTGGGGAGTGAGGCCTATTTAGTAGTCACTGGCCGAAGTGGGGCAGGGCCTGTGTGGTTCTTGGATGATGTGGTTGCTACAAAGGCACTGGgtgaggtcttgttctttggtgcatatacaatcacagggtggatatggagc #### Ctsf_ID678_6 --> 2 - 1 Original Alignment aaGCCCAGTGGCGATTGACTGTCTTTGCAAGAAATATGATACGAGCACAGAAGATTCAGGCCCTGGACCGCGGCACAGCTCAGTATGGGATCACCAAGTTCAGTGACCTCACAg cttttcagacctatatccataggcactcctcaccatgaactccattgcagaaGCCCACTGGCGGCTAACTGTTTTTGCAAGAAATATGATACAAGCTCAGATAATTCAGGCCCTGGACTGTGGCTCAGCTCAGTATAGCATCATGAAGTTCCGTGGCCTCACAggtgagaacaccaaataaagctgacattaacaatgagattggataggcctt Alignment from CESAR aaGCCCAGTGGCGATTGACTGTCTTTGCAAGAAATATGATACGAGCACAGAAGATTCAGGCCCTGGACCGCGGCACAGCTCAGTATGGGATCACCAAGTTCAGTGACCTCACAg cttttcagacctatatccataggcactcctcaccatgaactccattgcagaaGCCCACTGGCGGCTAACTGTTTTTGCAAGAAATATGATACAAGCTCAGATAATTCAGGCCCTGGACTGTGGCTCAGCTCAGTATAGCATCATGAAGTTCCGTGGCCTCACAggtgagaacaccaaataaagctgacattaacaatgagattggataggcctt Alignment from Spaln_aa2Genome AAGCCCAGTGGCGATTGACTGTCTTTGCAAGAAATATGATACGAGCACAGAAGATTCAGGCCCTGGACCGCGGCACAGCTCAGTATGGGATCACCAAGTTCAGTGACCTCACAG cttttcagacctatatccataggcactcctcaccatgaactccattgcagAAGCCCACTGGCGGCTAACTGTTTTTGCAAGAAATATGATACAAGCTCAGATAATTCAGGCCCTGGACTGTGGCTCAGCTCAGTATAGCATCATGAAGTTCCGTGGCCTCACAGgtgagaacaccaaataaagctgacattaacaatgagattggataggcctt Alignment from Spaln_nt2Genome AAGCCCAGTGGCGATTGACTGTCTTTGCAAGAAATATGATACGAGCACAGAAGATTCAGGCCCTGGACCGCGGCACAGCTCAGTATGGGATCACCAAGTTCAGTGACCTCACAG cttttcagacctatatccataggcactcctcaccatgaactccattgcagAAGCCCACTGGCGGCTAACTGTTTTTGCAAGAAATATGATACAAGCTCAGATAATTCAGGCCCTGGACTGTGGCTCAGCTCAGTATAGCATCATGAAGTTCCGTGGCCTCACAGgtgagaacaccaaataaagctgacattaacaatgagattggataggcctt Alignment from Pairagon AAGCCCAGTGGCGATTGACTGTCTTTGCAAGAAATATGATACGAGCACAGAAGATTCAGGCCCTGGACCGCGGCACAGCTCAGTATGGGATCACCAAGTTCAGTGACCTCACAG cttttcagacctatatccataggcactcctcaccatgaactccattgcagAAGCCCACTGGCGGCTAACTGTTTTTGCAAGAAATATGATACAAGCTCAGATAATTCAGGCCCTGGACTGTGGCTCAGCTCAGTATAGCATCATGAAGTTCCGTGGCCTCACAGgtgagaacaccaaataaagctgacattaacaatgagattggataggcctt Alignment from Exonerate_protein2genome AAGCCCAGTGGCGATTGACTGTCTTTGCAAGAAATATGATACGAGCACAGAAGATTCAGGCCCTGGACCGCGGCACAGCTCAGTATGGGATCACCAAGTTCAGTGACCTCACAG cttttcagacctatatccataggcactcctcaccatgaactccattgcagAAGCCCACTGGCGGCTAACTGTTTTTGCAAGAAATATGATACAAGCTCAGATAATTCAGGCCCTGGACTGTGGCTCAGCTCAGTATAGCATCATGAAGTTCCGTGGCCTCACAGgtgagaacaccaaataaagctgacattaacaatgagattggataggcctt Alignment from Exonerate_coding2genome AAGCCCAGTGGCGATTGACTGTCTTTGCAAGAAATATGATACGAGCACAGAAGATTCAGGCCCTGGACCGCGGCACAGCTCAGTATGGGATCACCAAGTTCAGTGACCTCACAG cttttcagacctatatccataggcactcctcaccatgaactccattgcagAAGCCCACTGGCGGCTAACTGTTTTTGCAAGAAATATGATACAAGCTCAGATAATTCAGGCCCTGGACTGTGGCTCAGCTCAGTATAGCATCATGAAGTTCCGTGGCCTCACAGgtgagaacaccaaataaagctgacattaacaatgagattggataggcctt Alignment from GeneWise AAGCCCAGTGGCGATTGACTGTCTTTGCAAGAAATATGATACGAGCACAGAAGATTCAGGCCCTGGACCGCGGCACAGCTCAGTATGGGATCACCAAGTTCAGTGACCTCACAG cttttcagacctatatccataggcactcctcaccatgaactccattgcagAAGCCCACTGGCGGCTAACTGTTTTTGCAAGAAATATGATACAAGCTCAGATAATTCAGGCCCTGGACTGTGGCTCAGCTCAGTATAGCATCATGAAGTTCCGTGGCCTCACAGgtgagaacaccaaataaagctgacattaacaatgagattggataggcctt #### Ctsf_ID680_8 --> 0 - 1 Original Alignment GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGg cctcagagaaacccattaggaggctctggactgtacctgtttccccccagAGCAGTATGTGCAGCTCTTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGG---TTGATTCGAGGAACTCTTCTATCA---TCAGAACAGggtatttatatgatccactctggatatatcagacaaactcctccatagggt Alignment from CESAR GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGg cctcagagaaacccattaggaggctctggactgtacctgtttccccccagAGCAGTATGTGCAGCTCTTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGG---TTGATTCGAGGAACTCTTCTATCA---TCAGAACAGggtatttatatgatccactctggatatatcagacaaactcctccatagggt Alignment from Spaln_aa2Genome ---GGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAG cctcagagaaacccattaggaggctctggactgtacctgtttccccccagAGCAGTATGTGCAGCTCTTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGGTTGATT---CGAGGAACTCTTCTATCA---TCAGAACAGGgtatttatatgatccactctggatatatcagacaaactcctccatagggt Alignment from Spaln_nt2Genome GGCA---TGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cctcagagaaacccattaggaggctctggactgtacctgtttccccccagAGCAGTATGTGCAGCTCTTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGGT---TGATTCGAGGAACTCTTCTATC---ATCAGAACAGGgtatttatatgatccactctggatatatcagacaaactcctccatagggt Alignment from Pairagon ----------------------------------------------CCAGGGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG CCTCAGAGAAACCCATTAGGAGGCTCTGGACTGTACCTGTTTCCCCCCAGAGCAGTATGTGCAGCTCTTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGGT---TGATTCGAGGAACTCTTCTATC---ATCAGAACAGGgtatttatatgatccactctggatatatcagacaaactcctccatagggt Alignment from Exonerate_protein2genome CAGGGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cctcagagaaacccattaggaggctctggactgtacctgtttccccccagAGCAGTATGTGCAGCTCTTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGGTTGATT---CGAGGAACTCTTCTATCA---TCAGAACAGGgtatttatatgatccactctggatatatcagacaaactcctccatagggt Alignment from Exonerate_coding2genome CAGGGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cctcagagaaacccattaggaggctctggactgtacctgtttccccccagAGCAGTATGTGCAGCTCTTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGGTTGATT---CGAGGAACTCTTCTATCA---TCAGAACAGGgtatttatatgatccactctggatatatcagacaaactcctccatagggt Alignment from GeneWise ---GGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cctcagagaaacccattaggaggctctggactgtacctgtttccccccagAGCAGTATGTGCAGCTCTTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGGTTGATT---CGAGGAACTCTTCTATCA---TCAGAACAGGgtatttatatgatccactctggatatatcagacaaactcctccatagggt #### Cutc_ID8807_2 --> 2 - 1 Original Alignment gaGCAGGAAATGGATTTCTTATGGAAGTGTGTGTAGATTCGGTGGAGTCCGCTGTGAATGCAGAAAGAGGAg gattaatctcttacttgattccttaccatttttttccctttttgttctaggaGCAGGAAATGGATTTCTTATGGAAGTGTGTGTTGACTTGGTGGAGTCTGCTGTGAATGCAGAGAGAGGAggtatgtaagaggtggatcgacctctcatagaacattaggctgtcacctag Alignment from CESAR gaGCAGGAAATGGATTTCTTATGGAAGTGTGTGTAGATTCGGTGGAGTCCGCTGTGAATGCAGAAAGAGGAg gattaatctcttacttgattccttaccatttttttccctttttgttctaggaGCAGGAAATGGATTTCTTATGGAAGTGTGTGTTGACTTGGTGGAGTCTGCTGTGAATGCAGAGAGAGGAggtatgtaagaggtggatcgacctctcatagaacattaggctgtcacctag Alignment from Spaln_aa2Genome GAGCAGGAAATGGATTTCTTATGGAAGTGTGTGTAGATTCGGTGGAGTCCGCTGTGAATGCAGAAAGAGGAG gattaatctcttacttgattccttaccatttttttccctttttgttctagGAGCAGGAAATGGATTTCTTATGGAAGTGTGTGTTGACTTGGTGGAGTCTGCTGTGAATGCAGAGAGAGGAGgtatgtaagaggtggatcgacctctcatagaacattaggctgtcacctag Alignment from Spaln_nt2Genome GAGCAGGAAATGGATTTCTTATGGAAGTGTGTGTAGATTCGGTGGAGTCCGCTGTGAATGCAGAAAGAGGAG gattaatctcttacttgattccttaccatttttttccctttttgttctagGAGCAGGAAATGGATTTCTTATGGAAGTGTGTGTTGACTTGGTGGAGTCTGCTGTGAATGCAGAGAGAGGAGgtatgtaagaggtggatcgacctctcatagaacattaggctgtcacctag Alignment from Pairagon GAGCAGGAAATGGATTTCTTATGGAAGTGTGTGTAGATTCGGTGGAGTCCGCTGTGAATGCAGAAAGAGGAG gattaatctcttacttgattccttaccatttttttccctttttgttctagGAGCAGGAAATGGATTTCTTATGGAAGTGTGTGTTGACTTGGTGGAGTCTGCTGTGAATGCAGAGAGAGGAGgtatgtaagaggtggatcgacctctcatagaacattaggctgtcacctag Alignment from Exonerate_protein2genome GAGCAGGAAATGGATTTCTTATGGAAGTGTGTGTAGATTCGGTGGAGTCCGCTGTGAATGCAGAAAGAGGAG gattaatctcttacttgattccttaccatttttttccctttttgttctagGAGCAGGAAATGGATTTCTTATGGAAGTGTGTGTTGACTTGGTGGAGTCTGCTGTGAATGCAGAGAGAGGAGgtatgtaagaggtggatcgacctctcatagaacattaggctgtcacctag Alignment from Exonerate_coding2genome GGAGCAGGAAATGGATTTCTTATGGAAGTGTGTGTAGATTCGGTGGAGTCCGCTGTGAATGCAGAAAGAGGAG gattaatctcttacttgattccttaccatttttttccctttttgttctaGGAGCAGGAAATGGATTTCTTATGGAAGTGTGTGTTGACTTGGTGGAGTCTGCTGTGAATGCAGAGAGAGGAGgtatgtaagaggtggatcgacctctcatagaacattaggctgtcacctag Alignment from GeneWise GAGCAGGAAATGGATTTCTTATGGAAGTGTGTGTAGATTCGGTGGAGTCCGCTGTGAATGCAGAAAGAGGAG gattaatctcttacttgattccttaccatttttttccctttttgttctagGAGCAGGAAATGGATTTCTTATGGAAGTGTGTGTTGACTTGGTGGAGTCTGCTGTGAATGCAGAGAGAGGAGgtatgtaagaggtggatcgacctctcatagaacattaggctgtcacctag #### Cutc_ID8810_5 --> 2 - 1 Original Alignment ctCTTTGCCGCCCTCTGCCGGTCACTTTCCACAGAg actttgtgttgtggatccatttctgcttccagggcttctgtattttgcagctCTTTGCCGTCCTCTTTTCGTCACATTTCATAGAagtcagccacaaaagcttaatatgagtgtacaaccccactcacaggtaggc Alignment from CESAR ctCTTTGCCGCCCTCTGCCGGTCACTTTCCACAGAg actttgtgttgtggatccatttctgcttccagggcttctgtattttgcagctCTTTGCCGTCCTCTTTTCGTCACATTTCATAGAagtcagccacaaaagcttaatatgagtgtacaaccccactcacaggtaggc Alignment from Spaln_aa2Genome CTCTTTGCCGCCCTCTGCCGGTCACTTTCCACAGAG actttgtgttgtggatccatttctgcttccagggcttctgtattttgcagCTCTTTGCCGTCCTCTTTTCGTCACATTTCATAGAAgtcagccacaaaagcttaatatgagtgtacaaccccactcacaggtaggc Alignment from Spaln_nt2Genome CTCTTTGCCGCCCTCTGCCGGTCACTTTCCACAGAG actttgtgttgtggatccatttctgcttccagggcttctgtattttgcagCTCTTTGCCGTCCTCTTTTCGTCACATTTCATAGAAgtcagccacaaaagcttaatatgagtgtacaaccccactcacaggtaggc Alignment from Pairagon CTCTTTGCCGCCCTCTGCCGGTCACTTTCCACAGAG actttgtgttgtggatccatttctgcttccagggcttctgtattttgcagCTCTTTGCCGTCCTCTTTTCGTCACATTTCATAGAAgtcagccacaaaagcttaatatgagtgtacaaccccactcacaggtaggc Alignment from Exonerate_protein2genome CTCTTTGCCGCCCTCTGCCGGTCACTTTCCACAGAG actttgtgttgtggatccatttctgcttccagggcttctgtattttgcagCTCTTTGCCGTCCTCTTTTCGTCACATTTCATAGAAgtcagccacaaaagcttaatatgagtgtacaaccccactcacaggtaggc Alignment from Exonerate_coding2genome actttgtgttgtggatccatttctgcttccagggcttctgtattttgcagctctttgccgtcctcttttcgtcacatttcatagaagtcagccacaaaagcttaatatgagtgtacaaccccactcacaggtaggc Alignment from GeneWise CTCTTTGCCGCCCTCTGCCGGTCACTTTCCACAGAG actttgtgttgtggatccatttctgcttccagggcttctgtattttgcagCTCTTTGCCGTCCTCTTTTCGTCACATTTCATAGAAgtcagccacaaaagcttaatatgagtgtacaaccccactcacaggtaggc #### Cwf19l1_ID8932_12 --> 0 - 0 Original Alignment GTCATTCCTGTGCCCCTCAGCTGCTGTGCTACAGATGACATTAAAGATGCCTTCATTACCCAGGCACAGGAGCAGCAGATAGAGCTGTTGGAGATTCCAGAACACTCAGACATCAAACAG tgtacaacaaataagttgagtttattcagccatatttatgtatcatatagGTTATTCCAGTCTCCCTCAGCTGCTGTGTGACTGATGACATACAAGATGCTTTCATTATGCAGGCACAGGAGCAGCAGACAGAGCTATTAGAAATTCCAGAACACTCAGATATTAAGCAGgtaggtataggaggggagggtaagttaatattcatggtgcaattgtacaa Alignment from CESAR GTCATTCCTGTGCCCCTCAGCTGCTGTGCTACAGATGACATTAAAGATGCCTTCATTACCCAGGCACAGGAGCAGCAGATAGAGCTGTTGGAGATTCCAGAACACTCAGACATCAAACAG tgtacaacaaataagttgagtttattcagccatatttatgtatcatatagGTTATTCCAGTCTCCCTCAGCTGCTGTGTGACTGATGACATACAAGATGCTTTCATTATGCAGGCACAGGAGCAGCAGACAGAGCTATTAGAAATTCCAGAACACTCAGATATTAAGCAGgtaggtataggaggggagggtaagttaatattcatggtgcaattgtacaa Alignment from Spaln_aa2Genome GTCATTCCTGTGCCCCTCAGCTGCTGTGCTACAGATGACATTAAAGATGCCTTCATTACCCAGGCACAGGAGCAGCAGATAGAGCTGTTGGAGATTCCAGAACACTCAGACATCAAACAG tgtacaacaaataagttgagtttattcagccatatttatgtatcatatagGTTATTCCAGTCTCCCTCAGCTGCTGTGTGACTGATGACATACAAGATGCTTTCATTATGCAGGCACAGGAGCAGCAGACAGAGCTATTAGAAATTCCAGAACACTCAGATATTAAGCAGgtaggtataggaggggagggtaagttaatattcatggtgcaattgtacaa Alignment from Spaln_nt2Genome GTCATTCCTGTGCCCCTCAGCTGCTGTGCTACAGATGACATTAAAGATGCCTTCATTACCCAGGCACAGGAGCAGCAGATAGAGCTGTTGGAGATTCCAGAACACTCAGACATCAAACAG tgtacaacaaataagttgagtttattcagccatatttatgtatcatatagGTTATTCCAGTCTCCCTCAGCTGCTGTGTGACTGATGACATACAAGATGCTTTCATTATGCAGGCACAGGAGCAGCAGACAGAGCTATTAGAAATTCCAGAACACTCAGATATTAAGCAGgtaggtataggaggggagggtaagttaatattcatggtgcaattgtacaa Alignment from Pairagon GTCATTCCTGTGCCCCTCAGCTGCTGTGCTACAGATGACATTAAAGATGCCTTCATTACCCAGGCACAGGAGCAGCAGATAGAGCTGTTGGAGATTCCAGAACACTCAGACATCAAACAG tgtacaacaaataagttgagtttattcagccatatttatgtatcatatagGTTATTCCAGTCTCCCTCAGCTGCTGTGTGACTGATGACATACAAGATGCTTTCATTATGCAGGCACAGGAGCAGCAGACAGAGCTATTAGAAATTCCAGAACACTCAGATATTAAGCAGgtaggtataggaggggagggtaagttaatattcatggtgcaattgtacaa Alignment from Exonerate_protein2genome GTCATTCCTGTGCCCCTCAGCTGCTGTGCTACAGATGACATTAAAGATGCCTTCATTACCCAGGCACAGGAGCAGCAGATAGAGCTGTTGGAGATTCCAGAACACTCAGACATCAAACAG tgtacaacaaataagttgagtttattcagccatatttatgtatcatatagGTTATTCCAGTCTCCCTCAGCTGCTGTGTGACTGATGACATACAAGATGCTTTCATTATGCAGGCACAGGAGCAGCAGACAGAGCTATTAGAAATTCCAGAACACTCAGATATTAAGCAGgtaggtataggaggggagggtaagttaatattcatggtgcaattgtacaa Alignment from Exonerate_coding2genome GTCATTCCTGTGCCCCTCAGCTGCTGTGCTACAGATGACATTAAAGATGCCTTCATTACCCAGGCACAGGAGCAGCAGATAGAGCTGTTGGAGATTCCAGAACACTCAGACATCAAACAG tgtacaacaaataagttgagtttattcagccatatttatgtatcatatagGTTATTCCAGTCTCCCTCAGCTGCTGTGTGACTGATGACATACAAGATGCTTTCATTATGCAGGCACAGGAGCAGCAGACAGAGCTATTAGAAATTCCAGAACACTCAGATATTAAGCAGgtaggtataggaggggagggtaagttaatattcatggtgcaattgtacaa Alignment from GeneWise GTCATTCCTGTGCCCCTCAGCTGCTGTGCTACAGATGACATTAAAGATGCCTTCATTACCCAGGCACAGGAGCAGCAGATAGAGCTGTTGGAGATTCCAGAACACTCAGACATCAAACAG tgtacaacaaataagttgagtttattcagccatatttatgtatcatatagGTTATTCCAGTCTCCCTCAGCTGCTGTGTGACTGATGACATACAAGATGCTTTCATTATGCAGGCACAGGAGCAGCAGACAGAGCTATTAGAAATTCCAGAACACTCAGATATTAAGCAGgtaggtataggaggggagggtaagttaatattcatggtgcaattgtacaa #### Cwf19l1_ID8935_9 --> 0 - 1 Original Alignment GAAGAGTCAGCCTGTCAGTTCTTCTTCGATTTGAGTGAAAAGCAGGGAAGGAAGCGGCCGTCCACAGGCAGGGATACCAGGCCTCCCCACGCTAAGCAGCCTCGCAAGCCTc atggtcgcaaagcaacatatcatatccctctgcctcttgcctccccatagGAAGAGTCCGCCTGCCAATTCTTCTTTGATCTAAGTGAAAGGCAGGGAAGGAAGCGGCCTTCCACTGGCAGAGATGCCAGGCCTCCCCATGCAAAGCAACCCCATAAACCTcgtaagctgctgttaccctgttgcagtgacttgctggattggggcaaggac Alignment from CESAR GAAGAGTCAGCCTGTCAGTTCTTCTTCGATTTGAGTGAAAAGCAGGGAAGGAAGCGGCCGTCCACAGGCAGGGATACCAGGCCTCCCCACGCTAAGCAGCCTCGCAAGCCTc atggtcgcaaagcaacatatcatatccctctgcctcttgcctccccatagGAAGAGTCCGCCTGCCAATTCTTCTTTGATCTAAGTGAAAGGCAGGGAAGGAAGCGGCCTTCCACTGGCAGAGATGCCAGGCCTCCCCATGCAAAGCAACCCCATAAACCTcgtaagctgctgttaccctgttgcagtgacttgctggattggggcaaggac Alignment from Spaln_aa2Genome GAAGAGTCAGCCTGTCAGTTCTTCTTCGATTTGAGTGAAAAGCAGGGAAGGAAGCGGCCGTCCACAGGCAGGGATACCAGGCCTCCCCACGCTAAGCAGCCTCGCAAGCCTC atggtcgcaaagcaacatatcatatccctctgcctcttgcctccccatagGAAGAGTCCGCCTGCCAATTCTTCTTTGATCTAAGTGAAAGGCAGGGAAGGAAGCGGCCTTCCACTGGCAGAGATGCCAGGCCTCCCCATGCAAAGCAACCCCATAAACCTCgtaagctgctgttaccctgttgcagtgacttgctggattggggcaaggac Alignment from Spaln_nt2Genome GAAGAGTCAGCCTGTCAGTTCTTCTTCGATTTGAGTGAAAAGCAGGGAAGGAAGCGGCCGTCCACAGGCAGGGATACCAGGCCTCCCCACGCTAAGCAGCCTCGCAAGCCTC atggtcgcaaagcaacatatcatatccctctgcctcttgcctccccatagGAAGAGTCCGCCTGCCAATTCTTCTTTGATCTAAGTGAAAGGCAGGGAAGGAAGCGGCCTTCCACTGGCAGAGATGCCAGGCCTCCCCATGCAAAGCAACCCCATAAACCTCgtaagctgctgttaccctgttgcagtgacttgctggattggggcaaggac Alignment from Pairagon GAAGAGTCAGCCTGTCAGTTCTTCTTCGATTTGAGTGAAAAGCAGGGAAGGAAGCGGCCGTCCACAGGCAGGGATACCAGGCCTCCCCACGCTAAGCAGCCTCGCAAGCCTC atggtcgcaaagcaacatatcatatccctctgcctcttgcctccccatagGAAGAGTCCGCCTGCCAATTCTTCTTTGATCTAAGTGAAAGGCAGGGAAGGAAGCGGCCTTCCACTGGCAGAGATGCCAGGCCTCCCCATGCAAAGCAACCCCATAAACCTCgtaagctgctgttaccctgttgcagtgacttgctggattggggcaaggac Alignment from Exonerate_protein2genome GAAGAGTCAGCCTGTCAGTTCTTCTTCGATTTGAGTGAAAAGCAGGGAAGGAAGCGGCCGTCCACAGGCAGGGATACCAGGCCTCCCCACGCTAAGCAGCCTCGCAAGCCTC atggtcgcaaagcaacatatcatatccctctgcctcttgcctccccatagGAAGAGTCCGCCTGCCAATTCTTCTTTGATCTAAGTGAAAGGCAGGGAAGGAAGCGGCCTTCCACTGGCAGAGATGCCAGGCCTCCCCATGCAAAGCAACCCCATAAACCTCgtaagctgctgttaccctgttgcagtgacttgctggattggggcaaggac Alignment from Exonerate_coding2genome CCGCCCCTCAGGAAGAGTCAGCCTGTCAGTTCTTCTTCGATTTGAGTGAAAAGCAGGGA-----AGGAAGCGGCCGTCCACAGGCAGGGATACCAGGCCTCCCCACGCTAAGCAGCCTCGCAAGCCTC atggtcgcaaagcaacatatcatatccctctgcctcttgCCTCCCCATAGGAAGAGTCCGCCTGCCAATTCTTCTTTGATCTAAGTGAAA-----GGCAGGGAAGGAAGCGGCCTTCCACTGGCAGAGATGCCAGGCCTCCCCATGCAAAGCAACCCCATAAACCTCgtaagctgctgttaccctgttgcagtgacttgctggattggggcaaggac Alignment from GeneWise GAAGAGTCAGCCTGTCAGTTCTTCTTCGATTTGAGTGAAAAGCAGGGAAGGAAGCGGCCGTCCACAGGCAGGGATACCAGGCCTCCCCACGCTAAGCAGCCTCGCAAGCCTC atggtcgcaaagcaacatatcatatccctctgcctcttgcctccccatagGAAGAGTCCGCCTGCCAATTCTTCTTTGATCTAAGTGAAAGGCAGGGAAGGAAGCGGCCTTCCACTGGCAGAGATGCCAGGCCTCCCCATGCAAAGCAACCCCATAAACCTCgtaagctgctgttaccctgttgcagtgacttgctggattggggcaaggac #### Cwf19l1_ID8936_8 --> 0 - 0 Original Alignment TATCTTTATGCCTTCAGTATTGTTCCCATGAAGCTGATGGCTGTAGCCGAACTGGTAAAGCAGCCTCCGGACGTCACCGAGAACCCTTACCGAGACTCTGGGAAGCAGGCAGCCGGAGGGAAACACATTCCCGCCCCTCAG gttgaagcatctggctctgggattcctcatatattctctttttgttccagTATCTGTATGCCTTTGGTATTGTTCCTACAAAGCTGATGGCAGTTGTTAAACTGATAAGGCAAGCTCCAGATGTCACTGAGAACCCTTATGGAGACTCAGGAAAACAGGCAGCTGGAGTGAAACAGATTCCTGCTCCTCAAgtaagtggagtattccaagcatagaaaataatataagcaatctggtacca Alignment from CESAR TATCTTTATGCCTTCAGTATTGTTCCCATGAAGCTGATGGCTGTAGCCGAACTGGTAAAGCAGCCTCCGGACGTCACCGAGAACCCTTACCGAGACTCTGGGAAGCAGGCAGCCGGAGGGAAACACATTCCCGCCCCTCAG gttgaagcatctggctctgggattcctcatatattctctttttgttccagTATCTGTATGCCTTTGGTATTGTTCCTACAAAGCTGATGGCAGTTGTTAAACTGATAAGGCAAGCTCCAGATGTCACTGAGAACCCTTATGGAGACTCAGGAAAACAGGCAGCTGGAGTGAAACAGATTCCTGCTCCTCAAgtaagtggagtattccaagcatagaaaataatataagcaatctggtacca Alignment from Spaln_aa2Genome TATCTTTATGCCTTCAGTATTGTTCCCATGAAGCTGATGGCTGTAGCCGAACTGGTAAAGCAGCCTCCGGACGTCACCGAGAACCCTTACCGAGACTCTGGGAAGCAGGCAGCCGGAGGGAAACACATTCCCGCCCCTCAG gttgaagcatctggctctgggattcctcatatattctctttttgttccagTATCTGTATGCCTTTGGTATTGTTCCTACAAAGCTGATGGCAGTTGTTAAACTGATAAGGCAAGCTCCAGATGTCACTGAGAACCCTTATGGAGACTCAGGAAAACAGGCAGCTGGAGTGAAACAGATTCCTGCTCCTCAAgtaagtggagtattccaagcatagaaaataatataagcaatctggtacca Alignment from Spaln_nt2Genome TATCTTTATGCCTTCAGTATTGTTCCCATGAAGCTGATGGCTGTAGCCGAACTGGTAAAGCAGCCTCCGGACGTCACCGAGAACCCTTACCGAGACTCTGGGAAGCAGGCAGCCGGAGGGAAACACATTCCCGCCCCTCAG gttgaagcatctggctctgggattcctcatatattctctttttgttccagTATCTGTATGCCTTTGGTATTGTTCCTACAAAGCTGATGGCAGTTGTTAAACTGATAAGGCAAGCTCCAGATGTCACTGAGAACCCTTATGGAGACTCAGGAAAACAGGCAGCTGGAGTGAAACAGATTCCTGCTCCTCAAgtaagtggagtattccaagcatagaaaataatataagcaatctggtacca Alignment from Pairagon TATCTTTATGCCTTCAGTATTGTTCCCATGAAGCTGATGGCTGTAGCCGAACTGGTAAAGCAGCCTCCGGACGTCACCGAGAACCCTTACCGAGACTCTGGGAAGCAGGCAGCCGGAGGGAAACACATTCCCGCCCCTCAG gttgaagcatctggctctgggattcctcatatattctctttttgttccagTATCTGTATGCCTTTGGTATTGTTCCTACAAAGCTGATGGCAGTTGTTAAACTGATAAGGCAAGCTCCAGATGTCACTGAGAACCCTTATGGAGACTCAGGAAAACAGGCAGCTGGAGTGAAACAGATTCCTGCTCCTCAAgtaagtggagtattccaagcatagaaaataatataagcaatctggtacca Alignment from Exonerate_protein2genome TATCTTTATGCCTTCAGTATTGTTCCCATGAAGCTGATGGCTGTAGCCGAACTGGTAAAGCAGCCTCCGGACGTCACCGAGAACCCTTACCGAGACTCTGGGAAGCAGGCAGCCGGAGGGAAACACATTCCCGCCCCTCAG gttgaagcatctggctctgggattcctcatatattctctttttgttccagTATCTGTATGCCTTTGGTATTGTTCCTACAAAGCTGATGGCAGTTGTTAAACTGATAAGGCAAGCTCCAGATGTCACTGAGAACCCTTATGGAGACTCAGGAAAACAGGCAGCTGGAGTGAAACAGATTCCTGCTCCTCAAgtaagtggagtattccaagcatagaaaataatataagcaatctggtacca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TATCTTTATGCCTTCAGTATTGTTCCCATGAAGCTGATGGCTGTAGCCGAACTGGTAAAGCAGCCTCCGGACGTCACCGAGAACCCTTACCGAGACTCTGGGAAGCAGGCAGCCGGAGGGAAACACATTCCCGCCCCTCAG gttgaagcatctggctctgggattcctcatatattctctttttgttccagTATCTGTATGCCTTTGGTATTGTTCCTACAAAGCTGATGGCAGTTGTTAAACTGATAAGGCAAGCTCCAGATGTCACTGAGAACCCTTATGGAGACTCAGGAAAACAGGCAGCTGGAGTGAAACAGATTCCTGCTCCTCAAgtaagtggagtattccaagcatagaaaataatataagcaatctggtacca #### Cyp17a1_ID9998_2 --> 0 - 1 Original Alignment GTGACTCTAGGCCTCTTGTCGGACCAAGGAAAAGGCGTCGCCTTTGCG---GATAGTAGTAGCTCCTGGCAGCTGCACCGGAAGCTGGTATTCAGCACCTTTTCCCTGTTCAGGGATGACCAGAAACTGGAGAAGATGa tctagaccatgttatgaactcagtggcctactgtctgttcttctccttagATAACACTAGGTCTCCTGCCGGATCAG---AAAGGTGTGGCCTTTGCAGATGACAGTAGTACTTCATGGCAGGTACACCACAAGCTAGTGTTCAGCACCTTTTCCCTGTCAACAGATGACCAGAAGCTGGAGAAGATGggtaagtgaagttagacttagcaaaaggatttaagagatttacatgtagag Alignment from CESAR GTGACTCTAGGCCTCTTGTCGGACCAAGGAAAAGGCGTCGCCTTTGCGGAT---AGTAGTAGCTCCTGGCAGCTGCACCGGAAGCTGGTATTCAGCACCTTTTCCCTGTTCAGGGATGACCAGAAACTGGAGAAGATGa tctagaccatgttatgaactcagtggcctactgtctgttcttctccttagATAACACTAGGTCTCCTGCCGGATCAG---AAAGGTGTGGCCTTTGCAGATGACAGTAGTACTTCATGGCAGGTACACCACAAGCTAGTGTTCAGCACCTTTTCCCTGTCAACAGATGACCAGAAGCTGGAGAAGATGggtaagtgaagttagacttagcaaaaggatttaagagatttacatgtagag Alignment from Spaln_aa2Genome GTGACTCTAGGCCTCTTGTCGGACCAAGGAAAAGGCGTCGCCTTTGCGGATAGTAGTAGCTCCTGGCAGCTGCACCGGAAGCTGGTATTCAGCACCTTTTCCCTGTTCAGGGATGACCAGAAACTGGAGAAGATGA tctagaccatgttatgaactcagtggcctactgtctgttcttctccttagATAACACTAGGTCTCCTGCCGGATCAGAAAGGTGTGGCCTTTGCAGATGACAGTAGTACTTCATGGCAGGTACACCACAAGCTAGTGTTCAGCACCTTTTCCCTGTCAACAGATGACCAGAAGCTGGAGAAGATGGgtaagtgaagttagacttagcaaaaggatttaagagatttacatgtagag Alignment from Spaln_nt2Genome GTGACTCTAGGCCTCTTGTCGGACCAAGGAAAAGGCGTCGCCTTTGCGGAT---AGTAGTAGCTCCTGGCAGCTGCACCGGAAGCTGGTATTCAGCACCTTTTCCCTGTTCAGGGATGACCAGAAACTGGAGAAGATGA tctagaccatgttatgaactcagtggcctactgtctgttcttctccttagATAACACTAGGTCTCCTGCCGGATCA---GAAAGGTGTGGCCTTTGCAGATGACAGTAGTACTTCATGGCAGGTACACCACAAGCTAGTGTTCAGCACCTTTTCCCTGTCAACAGATGACCAGAAGCTGGAGAAGATGGgtaagtgaagttagacttagcaaaaggatttaagagatttacatgtagag Alignment from Pairagon GTGACTCTAGGCCTCTTGTCGGACCAAGGAAAAGGCGTCGCCTTTGCGGAT---AGTAGTAGCTCCTGGCAGCTGCACCGGAAGCTGGTATTCAGCACCTTTTCCCTGTTCAGGGATGACCAGAAACTGGAGAAGATGA tctagaccatgttatgaactcagtggcctactgtctgttcttctccttagATAACACTAGGTCTCCTGCCGGATCA---GAAAGGTGTGGCCTTTGCAGATGACAGTAGTACTTCATGGCAGGTACACCACAAGCTAGTGTTCAGCACCTTTTCCCTGTCAACAGATGACCAGAAGCTGGAGAAGATGGgtaagtgaagttagacttagcaaaaggatttaagagatttacatgtagag Alignment from Exonerate_protein2genome GTGACTCTAGGCCTCTTGTCGGACCAAGGAAAAGGCGTCGCCTTTGCG---GATAGTAGTAGCTCCTGGCAGCTGCACCGGAAGCTGGTATTCAGCACCTTTTCCCTGTTCAGGGATGACCAGAAACTGGAGAAGATGA tctagaccatgttatgaactcagtggcctactgtctgttcttctccttagATAACACTAGGTCTCCTGCCGGATCAG---AAAGGTGTGGCCTTTGCAGATGACAGTAGTACTTCATGGCAGGTACACCACAAGCTAGTGTTCAGCACCTTTTCCCTGTCAACAGATGACCAGAAGCTGGAGAAGATGGgtaagtgaagttagacttagcaaaaggatttaagagatttacatgtagag Alignment from Exonerate_coding2genome GTGACTCTAGGCCTCTTGTCGGACCAAGGAAAAGGCGTCGCCTTTGCG---GATAGTAGTAGCTCCTGGCAGCTGCACCGGAAGCTGGTATTCAGCACCTTTTCCCTGTTCAGGGATGACCAGAAACTGGAGAAGATGA tctagaccatgttatgaactcagtggcctactgtctgttcttctccttagATAACACTAGGTCTCCTGCCGGATCAG---AAAGGTGTGGCCTTTGCAGATGACAGTAGTACTTCATGGCAGGTACACCACAAGCTAGTGTTCAGCACCTTTTCCCTGTCAACAGATGACCAGAAGCTGGAGAAGATGGgtaagtgaagttagacttagcaaaaggatttaagagatttacatgtagag Alignment from GeneWise GTGACTCTAGGCCTCTTGTCGGACCAAGGAAAAGGCGTCGCCTTTGCGGAT---AGTAGTAGCTCCTGGCAGCTGCACCGGAAGCTGGTATTCAGCACCTTTTCCCTGTTCAGGGATGACCAGAAACTGGAGAAGATGA tctagaccatgttatgaactcagtggcctactgtctgttcttctccttagATAACACTAGGTCTCCTGCCGGATCAG---AAAGGTGTGGCCTTTGCAGATGACAGTAGTACTTCATGGCAGGTACACCACAAGCTAGTGTTCAGCACCTTTTCCCTGTCAACAGATGACCAGAAGCTGGAGAAGATGGgtaagtgaagttagacttagcaaaaggatttaagagatttacatgtagag #### Cyp26a1_ID7414_2 --> 0 - 0 Original Alignment CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG ccccttgcaaaccatggccacttccatgttttgttttgtctttgagatagCGCAGGAAGTTTGTTCAGATGGAGCACAGGAAGTATGGCTTTATCTACAAGACACATCTGTTTGGCTGGCCAACAGTGCGTGTGATGGGTACAGATAACGTTCGTCGTATATTGCTGGGGGAGCACCGCTTAGTGTCAGTTCACTGGCCTGCATCAGTACGTATTATCCTGGGTGCTGGCTGCCTTTCTAACCTGTATGATTCCTCACACAAGAAACAAAAGAAGgtgagcactgcaaggccaattaaagtaatgactggaaggccaattctaca Alignment from CESAR CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG ccccttgcaaaccatggccacttccatgttttgttttgtctttgagatagCGCAGGAAGTTTGTTCAGATGGAGCACAGGAAGTATGGCTTTATCTACAAGACACATCTGTTTGGCTGGCCAACAGTGCGTGTGATGGGTACAGATAACGTTCGTCGTATATTGCTGGGGGAGCACCGCTTAGTGTCAGTTCACTGGCCTGCATCAGTACGTATTATCCTGGGTGCTGGCTGCCTTTCTAACCTGTATGATTCCTCACACAAGAAACAAAAGAAGgtgagcactgcaaggccaattaaagtaatgactggaaggccaattctaca Alignment from Spaln_aa2Genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG ccccttgcaaaccatggccacttccatgttttgttttgtctttgagatagCGCAGGAAGTTTGTTCAGATGGAGCACAGGAAGTATGGCTTTATCTACAAGACACATCTGTTTGGCTGGCCAACAGTGCGTGTGATGGGTACAGATAACGTTCGTCGTATATTGCTGGGGGAGCACCGCTTAGTGTCAGTTCACTGGCCTGCATCAGTACGTATTATCCTGGGTGCTGGCTGCCTTTCTAACCTGTATGATTCCTCACACAAGAAACAAAAGAAGgtgagcactgcaaggccaattaaagtaatgactggaaggccaattctaca Alignment from Spaln_nt2Genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG ccccttgcaaaccatggccacttccatgttttgttttgtctttgagatagCGCAGGAAGTTTGTTCAGATGGAGCACAGGAAGTATGGCTTTATCTACAAGACACATCTGTTTGGCTGGCCAACAGTGCGTGTGATGGGTACAGATAACGTTCGTCGTATATTGCTGGGGGAGCACCGCTTAGTGTCAGTTCACTGGCCTGCATCAGTACGTATTATCCTGGGTGCTGGCTGCCTTTCTAACCTGTATGATTCCTCACACAAGAAACAAAAGAAGgtgagcactgcaaggccaattaaagtaatgactggaaggccaattctaca Alignment from Pairagon CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG ccccttgcaaaccatggccacttccatgttttgttttgtctttgagatagCGCAGGAAGTTTGTTCAGATGGAGCACAGGAAGTATGGCTTTATCTACAAGACACATCTGTTTGGCTGGCCAACAGTGCGTGTGATGGGTACAGATAACGTTCGTCGTATATTGCTGGGGGAGCACCGCTTAGTGTCAGTTCACTGGCCTGCATCAGTACGTATTATCCTGGGTGCTGGCTGCCTTTCTAACCTGTATGATTCCTCACACAAGAAACAAAAGAAGgtgagcactgcaaggccaattaaagtaatgactggaaggccaattctaca Alignment from Exonerate_protein2genome ccccttgcaaaccatggccacttccatgttttgttttgtctttgagatagcgcaggaagtttgttcagatggagcacaggaagtatggctttatctacaagacacatctgtttggctggccaacagtgcgtgtgatgggtacagataacgttcgtcgtatattgctgggggagcaccgcttagtgtcagttcactggcctgcatcagtacgtattatcctgggtgctggctgcctttctaacctgtatgattcctcacacaagaaacaaaagaaggtgagcactgcaaggccaattaaagtaatgactggaaggccaattctaca Alignment from Exonerate_coding2genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG ccccttgcaaaccatggccacttccatgttttgttttgtctttgagatagCGCAGGAAGTTTGTTCAGATGGAGCACAGGAAGTATGGCTTTATCTACAAGACACATCTGTTTGGCTGGCCAACAGTGCGTGTGATGGGTACAGATAACGTTCGTCGTATATTGCTGGGGGAGCACCGCTTAGTGTCAGTTCACTGGCCTGCATCAGTACGTATTATCCTGGGTGCTGGCTGCCTTTCTAACCTGTATGATTCCTCACACAAGAAACAAAAGAAGgtgagcactgcaaggccaattaaagtaatgactggaaggccaattctaca Alignment from GeneWise CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG ccccttgcaaaccatggccacttccatgttttgttttgtctttgagatagCGCAGGAAGTTTGTTCAGATGGAGCACAGGAAGTATGGCTTTATCTACAAGACACATCTGTTTGGCTGGCCAACAGTGCGTGTGATGGGTACAGATAACGTTCGTCGTATATTGCTGGGGGAGCACCGCTTAGTGTCAGTTCACTGGCCTGCATCAGTACGTATTATCCTGGGTGCTGGCTGCCTTTCTAACCTGTATGATTCCTCACACAAGAAACAAAAGAAGgtgagcactgcaaggccaattaaagtaatgactggaaggccaattctaca #### Cyp26a1_ID7416_4 --> 0 - 0 Original Alignment GCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG CCCGTTCAGTGGTCTGTACCGTgtaagattctggtctgcttaccttccagGGTGTT---TCTCGTAATATAATACAGGCATGTATTGAGGAGAATGTTCATGCAAATATCCATCACCTCCAGGGCACAGAACCAGATGGGAGTTGCAAAGATGCATTGCAGCTTTTAATCAAGCATTCATGGGAG---GGTGAAGAATTAGACATACAGgtgagtaacagtatcaaaagatacctaaggggcaactgggtggatttcca Alignment from CESAR GCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG CCCGTTCAGTGGTCTGTACCGTgtaactttctggtctgcttaccttccagGGTGTT---TCTCGTAATATAATACAGGCATGTATTGAGGAGAATGTTCATGCAAATATCCATCACCTCCAGGGCACAGAACCAGATGGGAGTTGCAAAGATGCATTGCAGCTTTTAATCAAGCATTCATGGGAG---GGTGAAGAATTAGACATACAGgtgagtaacagtatcaaaagatacctaaggggcaactgggtggatttcca Alignment from Spaln_aa2Genome GCCCTTTAGCGGCCTGTACCGGGGC-------------------------GTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG CCCGTTCAGTGGTCTGTACCGTGTAAGATTCTGGTCTGCTTACCTTCCAgGGTGTTTCTCGTAATATAATACAGGCATGTATTGAGGAGAATGTTCATGCAAATATCCATCACCTCCAGGGCACAGAACCAGATGGGAGTTGCAAAGATGCATTGCAGCTTTTAATCAAGCATTCATGGGAG---GGTGAAGAATTAGACATACAGgtgagtaacagtatcaaaagatacctaaggggcaactgggtggatttcca Alignment from Spaln_nt2Genome GCCCTTTAGCGGCCT GTACCGGGGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG CCCGTTCAGTGGTCTgtaccgtgtaagattctggtctgcttaccttccagG---------GTG-TTTCTCGTAATATAATACAGGCATGTATTGAGGAGAATGTTCATGCAAATATCCATCACCTCCAGGGCACAGAACCAGATGGGAGTTGCAAAGATGCATTGCAGCTTTTAATCAAGCATTCATGGGAGGGTGAAGA---ATTAGACATACAGgtgagtaacagtatcaaaagatacctaaggggcaactgggtggatttcca Alignment from Pairagon GGGCGTGAAGGCGCGGAACCTT----------------------------------------------ATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG ---------------------TGTAAGATTCTGGTCTGCTTACCTTCCAGGGTGTTTCTCGTAATATAATACAGGCATGTATTGAGGAGAATGTTCATGCAAATATCCATCACCTCCAGGGCACAGAACCAGATGGGAGTTGCAAAGATGCATTGCAGCTTTTAATCAAGCATTCATGGGAGGGTGAAGA---ATTAGACATACAGgtgagtaacagtatcaaaagatacctaaggggcaactgggtggatttcca Alignment from Exonerate_protein2genome GCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG cccgttcagtggtctgtaccgtgtaagattctggtctgcttaccttccagggtgttTCTCGTAATATAATACAGGCATGTATTGAGGAGAATGTTCATGCAAATATCCATCACCTCCAGGGCACAGAACCAGATGGGAGTTGCAAAGATGCATTGCAGCTTTTAATCAAGCATTCATGGGAG---GGTGAAGAATTAGACATACAGgtgagtaacagtatcaaaagatacctaaggggcaactgggtggatttcca Alignment from Exonerate_coding2genome GCCCTTTAGCGGCCTGTACCGG CCCGTTCAGTGGTCTGTACCGTgtaagattctggtctgcttaccttccagggtgtttctcgtaatataatacaggcatgtattgaggagaatgttcatgcaaatatccatcacctccagggcacagaaccagatgggagttgcaaagatgcattgcagcttttaatcaagcattcatgggagggtgaagaattagacatacaggtgagtaacagtatcaaaagatacctaaggggcaactgggtggatttcca Alignment from GeneWise GCCCTTTAGCGGCCTGTACCGG---------------------------GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG CCCGTTCAGTGGTCTGTACCGTGTAAGATTCTGGTCTGCTTACCTTCCAGGGTGTT--TCTCGTAATATAATACAGGCATGTATTGAGGAGAATGTTCATGCAAATATCCATCACCTCCAGGGCACAGAACCAGATGGGAGTTGCAAAGATGCATTGCAGCTTTTAATCAAGCATTCATGGGAG---GGTGAAGAATTAGACATACAGgtgagtaacagtatcaaaagatacctaaggggcaactgggtggatttcca #### Cyp2c29_ID7764_7 --> 2 - 0 Original Alignment ctAAAGTCCAGGAAGAGATTGACCGTGTGGTTGGCAGGCACCGCAGCCCCTGCATGCAAGACAGGAGCCACATGCCCTATACAGACGCCATGATTCATGAGGTCCAGAGATTCATCGACCTCCTCCCCACTAGCCTGCCTCATGCAGTGACCTGTGACATTAAATTCAGGAAATACCTCATCCCCAAG cccttggctaggttcatccctacccatgaaatgtcacttgtcccctttagctCGAGTTCAGGAAGAGATTGACCATGGTGTTGGTAGACACCGCAGCCCCTGCATGCAAGACAAGAGTCACATGCCTTTCACAGATGCCACAATTCAGGAAGGTAAGAGGTTTATTGATCTACTCCCCACCAGTCTGCCCCATGCTGTAACATGTGACATTAAATTTAGAAAATATCTCATCCCCAAAgtgactctgttatctcttagagcatttcacttcctctagcctcatattct Alignment from CESAR ctAAAGTCCAGGAAGAGATTGACCGTGTGGTTGGCAGGCACCGCAGCCCCTGCATGCAAGACAGGAGCCACATGCCCTATACAGACGCCATGATTCATGAGGTCCAGAGATTCATCGACCTCCTCCCCACTAGCCTGCCTCATGCAGTGACCTGTGACATTAAATTCAGGAAATACCTCATCCCCAAG cccttggctaggttcatccctacccatgaaatgtcacttgtcccctttagctCGAGTTCAGGAAGAGATTGACCATGGTGTTGGTAGACACCGCAGCCCCTGCATGCAAGACAAGAGTCACATGCCTTTCACAGATGCCACAATTCAGGAAGGTAAGAGGTTTATTGATCTACTCCCCACCAGTCTGCCCCATGCTGTAACATGTGACATTAAATTTAGAAAATATCTCATCCCCAAAgtgactctgttatctcttagagcatttcacttcctctagcctcatattct Alignment from Spaln_aa2Genome CTAAAGTCCAGGAAGAGATTGACCGTGTGGTTGGCAGGCACCGCAGCCCCTGCATGCAAGACAGGAGCCACATGCCCTATACAGACGCCATGATTCATGAGGTCCAGAGATTCATCGACCTCCTCCCCACTAGCCTGCCTCATGCAGTGACCTGTGACATTAAATTCAGGAAATACCTCATCCCCAAG cccttggctaggttcatccctacccatgaaatgtcacttgtcccctttagCTCGAGTTCAGGAAGAGATTGACCATGGTGTTGGTAGACACCGCAGCCCCTGCATGCAAGACAAGAGTCACATGCCTTTCACAGATGCCACAATTCAGGAAGGTAAGAGGTTTATTGATCTACTCCCCACCAGTCTGCCCCATGCTGTAACATGTGACATTAAATTTAGAAAATATCTCATCCCCAAAgtgactctgttatctcttagagcatttcacttcctctagcctcatattct Alignment from Spaln_nt2Genome CTAAAGTCCAGGAAGAGATTGACCGTGTGGTTGGCAGGCACCGCAGCCCCTGCATGCAAGACAGGAGCCACATGCCCTATACAGACGCCATGATTCATGAGGTCCAGAGATTCATCGACCTCCTCCCCACTAGCCTGCCTCATGCAGTGACCTGTGACATTAAATTCAGGAAATACCTCATCCCCAAG cccttggctaggttcatccctacccatgaaatgtcacttgtcccctttagCTCGAGTTCAGGAAGAGATTGACCATGGTGTTGGTAGACACCGCAGCCCCTGCATGCAAGACAAGAGTCACATGCCTTTCACAGATGCCACAATTCAGGAAGGTAAGAGGTTTATTGATCTACTCCCCACCAGTCTGCCCCATGCTGTAACATGTGACATTAAATTTAGAAAATATCTCATCCCCAAAgtgactctgttatctcttagagcatttcacttcctctagcctcatattct Alignment from Pairagon CTAAAGTCCAGGAAGAGATTGACCGTGTGGTTGGCAGGCACCGCAGCCCCTGCATGCAAGACAGGAGCCACATGCCCTATACAGACGCCATGATTCATGAGGTCCAGAGATTCATCGACCTCCTCCCCACTAGCCTGCCTCATGCAGTGACCTGTGACATTAAATTCAGGAAATACCTCATCCCCAAG cccttggctaggttcatccctacccatgaaatgtcacttgtcccctttagCTCGAGTTCAGGAAGAGATTGACCATGGTGTTGGTAGACACCGCAGCCCCTGCATGCAAGACAAGAGTCACATGCCTTTCACAGATGCCACAATTCAGGAAGGTAAGAGGTTTATTGATCTACTCCCCACCAGTCTGCCCCATGCTGTAACATGTGACATTAAATTTAGAAAATATCTCATCCCCAAAgtgactctgttatctcttagagcatttcacttcctctagcctcatattct Alignment from Exonerate_protein2genome CTAAAGTCCAGGAAGAGATTGACCGTGTGGTTGGCAGGCACCGCAGCCCCTGCATGCAAGACAGGAGCCACATGCCCTATACAGACGCCATGATTCATGAGGTCCAGAGATTCATCGACCTCCTCCCCACTAGCCTGCCTCATGCAGTGACCTGTGACATTAAATTCAGGAAATACCTCATCCCCAAG cccttggctaggttcatccctacccatgaaatgtcacttgtcccctttagCTCGAGTTCAGGAAGAGATTGACCATGGTGTTGGTAGACACCGCAGCCCCTGCATGCAAGACAAGAGTCACATGCCTTTCACAGATGCCACAATTCAGGAAGGTAAGAGGTTTATTGATCTACTCCCCACCAGTCTGCCCCATGCTGTAACATGTGACATTAAATTTAGAAAATATCTCATCCCCAAAgtgactctgttatctcttagagcatttcacttcctctagcctcatattct Alignment from Exonerate_coding2genome CTAAAGTCCAGGAAGAGATTGACCGTGTGGTTGGCAGGCACCGCAGCCCCTGCATGCAAGACAGGAGCCACATGCCCTATACAGACGCCATGATTCATGAGGTCCAGAGATTCATCGACCTCCTCCCCACTAGCCTGCCTCATGCAGTGACCTGTGACATTAAATTCAGGAAATACCTCATCCCCAAG cccttggctaggttcatccctacccatgaaatgtcacttgtcccctttagCTCGAGTTCAGGAAGAGATTGACCATGGTGTTGGTAGACACCGCAGCCCCTGCATGCAAGACAAGAGTCACATGCCTTTCACAGATGCCACAATTCAGGAAGGTAAGAGGTTTATTGATCTACTCCCCACCAGTCTGCCCCATGCTGTAACATGTGACATTAAATTTAGAAAATATCTCATCCCCAAAgtgactctgttatctcttagagcatttcacttcctctagcctcatattct Alignment from GeneWise CTAAAGTCCAGGAAGAGATTGACCGTGTGGTTGGCAGGCACCGCAGCCCCTGCATGCAAGACAGGAGCCACATGCCCTATACAGACGCCATGATTCATGAGGTCCAGAGATTCATCGACCTCCTCCCCACTAGCCTGCCTCATGCAGTGACCTGTGACATTAAATTCAGGAAATACCTCATCCCCAAG cccttggctaggttcatccctacccatgaaatgtcacttgtcccctttagCTCGAGTTCAGGAAGAGATTGACCATGGTGTTGGTAGACACCGCAGCCCCTGCATGCAAGACAAGAGTCACATGCCTTTCACAGATGCCACAATTCAGGAAGGTAAGAGGTTTATTGATCTACTCCCCACCAGTCTGCCCCATGCTGTAACATGTGACATTAAATTTAGAAAATATCTCATCCCCAAAgtgactctgttatctcttagagcatttcacttcctctagcctcatattct #### Cyp2c37_ID7840_3 --> 2 - 1 Original Alignment gcCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg gagcagagcatgaaattttttagctgcatgatccttgctcctccttgcaggaCTTACATTCAGTAAGGGGAATGTATGGAGAAACATGAAGCACTACTCAATCATGCCCTTGCGTAATTTAGGTATGAGGAAAAGAAGCATTAAGGGACAGATTCAGGATGAAGCACATTGTCTTGTTGAGGAACTTAGGAAAACTAATtgtgaggtaggtctataggagaagcagttgtcgcaagttttacaatgaagg Alignment from CESAR gcCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg gagcagagcatgaaattttttagctgcatgatccttgctcctccttgcaggaCTTACATTCAGTAAGGGGAATGTATGGAGAAACATGAAGCACTACTCAATCATGCCCTTGCGTAATTTAGGTATGAGGAAAAGAAGCATTAAGGGACAGATTCAGGATGAAGCACATTGTCTTGTTGAGGAACTTAGGAAAACTAATtgtgaggtaggtctataggagaagcagttgtcgcaagttttacaatgaagg Alignment from Spaln_aa2Genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG gagcagagcatgaaattttttagctgcatgatccttgctcctccttgcagGACTTACATTCAGTAAGGGGAATGTATGGAGAAACATGAAGCACTACTCAATCATGCCCTTGCGTAATTTAGGTATGAGGAAAAGAAGCATTAAGGGACAGATTCAGGATGAAGCACATTGTCTTGTTGAGGAACTTAGGAAAACTAATTgtgaggtaggtctataggagaagcagttgtcgcaagttttacaatgaagg Alignment from Spaln_nt2Genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG gagcagagcatgaaattttttagctgcatgatccttgctcctccttgcagGACTTACATTCAGTAAGGGGAATGTATGGAGAAACATGAAGCACTACTCAATCATGCCCTTGCGTAATTTAGGTATGAGGAAAAGAAGCATTAAGGGACAGATTCAGGATGAAGCACATTGTCTTGTTGAGGAACTTAGGAAAACTAATTgtgaggtaggtctataggagaagcagttgtcgcaagttttacaatgaagg Alignment from Pairagon GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG gagcagagcatgaaattttttagctgcatgatccttgctcctccttgcagGACTTACATTCAGTAAGGGGAATGTATGGAGAAACATGAAGCACTACTCAATCATGCCCTTGCGTAATTTAGGTATGAGGAAAAGAAGCATTAAGGGACAGATTCAGGATGAAGCACATTGTCTTGTTGAGGAACTTAGGAAAACTAATTgtgaggtaggtctataggagaagcagttgtcgcaagttttacaatgaagg Alignment from Exonerate_protein2genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG gagcagagcatgaaattttttagctgcatgatccttgctcctccttgcagGACTTACATTCAGTAAGGGGAATGTATGGAGAAACATGAAGCACTACTCAATCATGCCCTTGCGTAATTTAGGTATGAGGAAAAGAAGCATTAAGGGACAGATTCAGGATGAAGCACATTGTCTTGTTGAGGAACTTAGGAAAACTAATTgtgaggtaggtctataggagaagcagttgtcgcaagttttacaatgaagg Alignment from Exonerate_coding2genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG gagcagagcatgaaattttttagctgcatgatccttgctcctccttgcagGACTTACATTCAGTAAGGGGAATGTATGGAGAAACATGAAGCACTACTCAATCATGCCCTTGCGTAATTTAGGTATGAGGAAAAGAAGCATTAAGGGACAGATTCAGGATGAAGCACATTGTCTTGTTGAGGAACTTAGGAAAACTAATTgtgaggtaggtctataggagaagcagttgtcgcaagttttacaatgaagg Alignment from GeneWise GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG gagcagagcatgaaattttttagctgcatgatccttgctcctccttgcagGACTTACATTCAGTAAGGGGAATGTATGGAGAAACATGAAGCACTACTCAATCATGCCCTTGCGTAATTTAGGTATGAGGAAAAGAAGCATTAAGGGACAGATTCAGGATGAAGCACATTGTCTTGTTGAGGAACTTAGGAAAACTAATTgtgaggtaggtctataggagaagcagttgtcgcaagttttacaatgaagg #### Cyp2c38_ID7777_3 --> 2 - 1 Original Alignment gcATTACTTTTAGCAATGGAAACAGTTGGAAAGAGACAAGACGTTTCACACTCATGACCCTAAGGAATTTGGGCATGGGGAAAAGGAACATTGAGGATCGTGTTCGAGAAGAAGCACAGTGTCTTGTGGAAGAACTAAGGAAAACCAAGg ttgagggaatccaagaagcaccgttttaactgttggtcatgtttctccaggcATCAGTTTTAGTAATGGCAATGGTTGGAAAGACACAAGATGTTTTTCTCTGATGATCCTAAGGAATTTAGGCATGGGCAGAGGGAACATTGAAGATCATGTTCAGGAAGAAGCACAGTGTTTGGTGGAAGAGTTGAAGAAAAGTAAGagtgagtggcaatgtgtacactacccatactttatatggaaccatcctctt Alignment from CESAR gcATTACTTTTAGCAATGGAAACAGTTGGAAAGAGACAAGACGTTTCACACTCATGACCCTAAGGAATTTGGGCATGGGGAAAAGGAACATTGAGGATCGTGTTCGAGAAGAAGCACAGTGTCTTGTGGAAGAACTAAGGAAAACCAAGg ttgagggaatccaagaagcaccgttttaactgttggtcatgtttctccaggcATCAGTTTTAGTAATGGCAATGGTTGGAAAGACACAAGATGTTTTTCTCTGATGATCCTAAGGAATTTAGGCATGGGCAGAGGGAACATTGAAGATCATGTTCAGGAAGAAGCACAGTGTTTGGTGGAAGAGTTGAAGAAAAGTAAGagtgagtggcaatgtgtacactacccatactttatatggaaccatcctctt Alignment from Spaln_aa2Genome GCATTACTTTTAGCAATGGAAACAGTTGGAAAGAGACAAGACGTTTCACACTCATGACCCTAAGGAATTTGGGCATGGGGAAAAGGAACATTGAGGATCGTGTTCGAGAAGAAGCACAGTGTCTTGTGGAAGAACTAAGGAAAACCAAGG ttgagggaatccaagaagcaccgttttaactgttggtcatgtttctccagGCATCAGTTTTAGTAATGGCAATGGTTGGAAAGACACAAGATGTTTTTCTCTGATGATCCTAAGGAATTTAGGCATGGGCAGAGGGAACATTGAAGATCATGTTCAGGAAGAAGCACAGTGTTTGGTGGAAGAGTTGAAGAAAAGTAAGAgtgagtggcaatgtgtacactacccatactttatatggaaccatcctctt Alignment from Spaln_nt2Genome GCATTACTTTTAGCAATGGAAACAGTTGGAAAGAGACAAGACGTTTCACACTCATGACCCTAAGGAATTTGGGCATGGGGAAAAGGAACATTGAGGATCGTGTTCGAGAAGAAGCACAGTGTCTTGTGGAAGAACTAAGGAAAACCAAGG ttgagggaatccaagaagcaccgttttaactgttggtcatgtttctccagGCATCAGTTTTAGTAATGGCAATGGTTGGAAAGACACAAGATGTTTTTCTCTGATGATCCTAAGGAATTTAGGCATGGGCAGAGGGAACATTGAAGATCATGTTCAGGAAGAAGCACAGTGTTTGGTGGAAGAGTTGAAGAAAAGTAAGAgtgagtggcaatgtgtacactacccatactttatatggaaccatcctctt Alignment from Pairagon GCATTACTTTTAGCAATGGAAACAGTTGGAAAGAGACAAGACGTTTCACACTCATGACCCTAAGGAATTTGGGCATGGGGAAAAGGAACATTGAGGATCGTGTTCGAGAAGAAGCACAGTGTCTTGTGGAAGAACTAAGGAAAACCAAGG ttgagggaatccaagaagcaccgttttaactgttggtcatgtttctccagGCATCAGTTTTAGTAATGGCAATGGTTGGAAAGACACAAGATGTTTTTCTCTGATGATCCTAAGGAATTTAGGCATGGGCAGAGGGAACATTGAAGATCATGTTCAGGAAGAAGCACAGTGTTTGGTGGAAGAGTTGAAGAAAAGTAAGAgtgagtggcaatgtgtacactacccatactttatatggaaccatcctctt Alignment from Exonerate_protein2genome GCATTACTTTTAGCAATGGAAACAGTTGGAAAGAGACAAGACGTTTCACACTCATGACCCTAAGGAATTTGGGCATGGGGAAAAGGAACATTGAGGATCGTGTTCGAGAAGAAGCACAGTGTCTTGTGGAAGAACTAAGGAAAACCAAGG ttgagggaatccaagaagcaccgttttaactgttggtcatgtttctccagGCATCAGTTTTAGTAATGGCAATGGTTGGAAAGACACAAGATGTTTTTCTCTGATGATCCTAAGGAATTTAGGCATGGGCAGAGGGAACATTGAAGATCATGTTCAGGAAGAAGCACAGTGTTTGGTGGAAGAGTTGAAGAAAAGTAAGAgtgagtggcaatgtgtacactacccatactttatatggaaccatcctctt Alignment from Exonerate_coding2genome GCATTACTTTTAGCAATGGAAACAGTTGGAAAGAGACAAGACGTTTCACACTCATGACCCTAAGGAATTTGGGCATGGGGAAAAGGAACATTGAGGATCGTGTTCGAGAAGAAGCACAGTGTCTTGTGGAAGAACTAAGGAAAACCAAGG ttgagggaatccaagaagcaccgttttaactgttggtcatgtttctccagGCATCAGTTTTAGTAATGGCAATGGTTGGAAAGACACAAGATGTTTTTCTCTGATGATCCTAAGGAATTTAGGCATGGGCAGAGGGAACATTGAAGATCATGTTCAGGAAGAAGCACAGTGTTTGGTGGAAGAGTTGAAGAAAAGTAAGAgtgagtggcaatgtgtacactacccatactttatatggaaccatcctctt Alignment from GeneWise GCATTACTTTTAGCAATGGAAACAGTTGGAAAGAGACAAGACGTTTCACACTCATGACCCTAAGGAATTTGGGCATGGGGAAAAGGAACATTGAGGATCGTGTTCGAGAAGAAGCACAGTGTCTTGTGGAAGAACTAAGGAAAACCAAGG ttgagggaatccaagaagcaccgttttaactgttggtcatgtttctccagGCATCAGTTTTAGTAATGGCAATGGTTGGAAAGACACAAGATGTTTTTCTCTGATGATCCTAAGGAATTTAGGCATGGGCAGAGGGAACATTGAAGATCATGTTCAGGAAGAAGCACAGTGTTTGGTGGAAGAGTTGAAGAAAAGTAAGAgtgagtggcaatgtgtacactacccatactttatatggaaccatcctctt #### Cyp2c39_ID7789_8 --> 0 - 1 Original Alignment GGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGACAGCAAGGAGTTCCCAAACCCAGAGTTGTTTGACCCTGGCCACTTTCTAGATGCTAATGGAAACTTTAAGAAAAGTGACCACTTCATGCCTTTCTCAGCAg tgaaatgtttcttttggagatgactttctatatgtctcatttttctgcagGGGACCTCAGCCGTAACATCACTGAAATCAGTGCTACAT---GGCAAAGAATTTCCAAACCCAGAGTTGTTTGACCCTTGCCACTTCCTAGGTGCTAATGGGAACTTTAAGAAGAGCCCCAGACTAATGCCCTTTTCAGCTggtaaaatgaaacttgtgtcagggctctaatggcaaaaggcctttagccaa Alignment from CESAR GGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGACAGCAAGGAGTTCCCAAACCCAGAGTTGTTTGACCCTGGCCACTTTCTAGATGCTAATGGAAACTTTAAGAAAAGTGACCACTTCATGCCTTTCTCAGCAg tgaaatgtttcttttggagatgactttctatatgtctcatttttctgcagGGGACCTCAGCCGTAACATCACTGAAATCAGTGCTACAT---GGCAAAGAATTTCCAAACCCAGAGTTGTTTGACCCTTGCCACTTCCTAGGTGCTAATGGGAACTTTAAGAAGAGCCCCAGACTAATGCCCTTTTCAGCTggtaaaatgaaacttgtgtcagggctctaatggcaaaaggcctttagccaa Alignment from Spaln_aa2Genome GGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGACAGCAAGGAGTTCCCAAACCCAGAGTTGTTTGACCCTGGCCACTTTCTAGATGCTAATGGAAACTTTAAGAAAAGTGACCACTTCATGCCTTTCTCAGCAG tgaaatgtttcttttggagatgactttctatatgtctcatttttctgcagGGGACCTCAGCCGTAACATCACTGAAATCAGTGCTACAT---GGCAAAGAATTTCCAAACCCAGAGTTGTTTGACCCTTGCCACTTCCTAGGTGCTAATGGGAACTTTAAGAAGAGCCCCAGACTAATGCCCTTTTCAGCTGgtaaaatgaaacttgtgtcagggctctaatggcaaaaggcctttagccaa Alignment from Spaln_nt2Genome GGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGACAGCAAGGAGTTCCCAAACCCAGAGTTGTTTGACCCTGGCCACTTTCTAGATGCTAATGGAAACTTTAAGAAAAGTGACCACTTCATGCCTTTCTCAGCAG tgaaatgtttcttttggagatgactttctatatgtctcatttttctgcagGGGACCTCAGCCGTAACATCACTGAAATCAGTGCTACATG---GCAAAGAATTTCCAAACCCAGAGTTGTTTGACCCTTGCCACTTCCTAGGTGCTAATGGGAACTTTAAGAAGAGCCCCAGACTAATGCCCTTTTCAGCTGgtaaaatgaaacttgtgtcagggctctaatggcaaaaggcctttagccaa Alignment from Pairagon GGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGACAGCAAGGAGTTCCCAAACCCAGAGTTGTTTGACCCTGGCCACTTTCTAGATGCTAATGGAAACTTTAAGAAAAGTGACCACTTCATGCCTTTCTCAGCAG tgaaatgtttcttttggagatgactttctatatgtctcatttttctgcagGGGACCTCAGCCGTAACATCACTGAAATCAGTGCTACATG---GCAAAGAATTTCCAAACCCAGAGTTGTTTGACCCTTGCCACTTCCTAGGTGCTAATGGGAACTTTAAGAAGAGCCCCAGACTAATGCCCTTTTCAGCTGgtaaaatgaaacttgtgtcagggctctaatggcaaaaggcctttagccaa Alignment from Exonerate_protein2genome GGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGACAGCAAGGAGTTCCCAAACCCAGAGTTGTTTGACCCTGGCCACTTTCTAGATGCTAATGGAAACTTTAAGAAAAGTGACCACTTCATGCCTTTCTCAGCAG tgaaatgtttcttttggagatgactttctatatgtctcatttttctgcagGGGACCTCAGCCGTAACATCACTGAAATCAGTGCTACAT---GGCAAAGAATTTCCAAACCCAGAGTTGTTTGACCCTTGCCACTTCCTAGGTGCTAATGGGAACTTTAAGAAGAGCCCCAGACTAATGCCCTTTTCAGCTGgtaaaatgaaacttgtgtcagggctctaatggcaaaaggcctttagccaa Alignment from Exonerate_coding2genome GGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGACAGCAAGGAGTTCCCAAACCCAGAGTTGTTTGACCCTGGCCACTTTCTAGATGCTAATGGAAACTTTAAGAAAAGTGACCACTTCATGCCTTTCTCAGCAG tgaaatgtttcttttggagatgactttctatatgtctcatttttctgcagGGGACCTCAGCCGTAACATCACTGAAATCAGTGCTACAT---GGCAAAGAATTTCCAAACCCAGAGTTGTTTGACCCTTGCCACTTCCTAGGTGCTAATGGGAACTTTAAGAAGAGCCCCAGACTAATGCCCTTTTCAGCTGgtaaaatgaaacttgtgtcagggctctaatggcaaaaggcctttagccaa Alignment from GeneWise GGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGACAGCAAGGAGTTCCCAAACCCAGAGTTGTTTGACCCTGGCCACTTTCTAGATGCTAATGGAAACTTTAAGAAAAGTGACCACTTCATGCCTTTCTCAGCAG tgaaatgtttcttttggagatgactttctatatgtctcatttttctgcagGGGACCTCAGCCGTAACATCACTGAAATCAGTGCTACAT---GGCAAAGAATTTCCAAACCCAGAGTTGTTTGACCCTTGCCACTTCCTAGGTGCTAATGGGAACTTTAAGAAGAGCCCCAGACTAATGCCCTTTTCAGCTGgtaaaatgaaacttgtgtcagggctctaatggcaaaaggcctttagccaa #### Cyp2c44_ID8883_8 --> 0 - 1 Original Alignment GGCACCGCTGTGTTCCCGTTTCTGTCTTCCATCTTGTTGGATCAAAAGGAGTTTCCCAACCCAGAGAAGTTTGATCCAGGACACTTTCTGGATAAAAATGGCTGCTTCAAGAAAACAGACTACTTTGTTCCTTTCTCCCTCg gctagttaaatcccctggtgtacttcatctctgccatactctcactccagGGTACTGGTGTGTTCCCATTCCAGTCCTCCATTTTGTTGGATCAAAAAGAATTCCCCAATACAGAGAGATTTGATCCG---CACTTTCTAGATAAAAATGGTTGTCTTAAGAAAACAGACTACTTAATTCCCTTCACCCTTggtactaatattatagatgtgactagatcagtaagaatccttggatagagc Alignment from CESAR GGCACCGCTGTGTTCCCGTTTCTGTCTTCCATCTTGTTGGATCAAAAGGAGTTTCCCAACCCAGAGAAGTTTGATCCAGGACACTTTCTGGATAAAAATGGCTGCTTCAAGAAAACAGACTACTTTGTTCCTTTCTCCCTCg gctagttaaatcccctggtgtacttcatctctgccatactctcactccagGGTACTGGTGTGTTCCCATTCCAGTCCTCCATTTTGTTGGATCAAAAAGAATTCCCCAATACAGAGAGATTTGATCCG---CACTTTCTAGATAAAAATGGTTGTCTTAAGAAAACAGACTACTTAATTCCCTTCACCCTTggtactaatattatagatgtgactagatcagtaagaatccttggatagagc Alignment from Spaln_aa2Genome GGCACCGCTGTGTTCCCGTTTCTGTCTTCCATCTTGTTGGATCAAAAGGAGTTTCCCAACCCAGAGAAGTTTGATCCAGGACACTTTCTGGATAAAAATGGCTGCTTCAAGAAAACAGACTACTTTGTTCCTTTCTCCCTCG gctagttaaatcccctggtgtacttcatctctgccatactctcactccagGGTACTGGTGTGTTCCCATTCCAGTCCTCCATTTTGTTGGATCAAAAAGAATTCCCCAATACAGAGAGATTTGATCCG---CACTTTCTAGATAAAAATGGTTGTCTTAAGAAAACAGACTACTTAATTCCCTTCACCCTTGgtactaatattatagatgtgactagatcagtaagaatccttggatagagc Alignment from Spaln_nt2Genome GGCACCGCTGTGTTCCCGTTTCTGTCTTCCATCTTGTTGGATCAAAAGGAGTTTCCCAACCCAGAGAAGTTTGATCCAGGACACTTTCTGGATAAAAATGGCTGCTTCAAGAAAACAGACTACTTTGTTCCTTTCTCCCTCG gctagttaaatcccctggtgtacttcatctctgccatactctcactccagGGTACTGGTGTGTTCCCATTCCAGTCCTCCATTTTGTTGGATCAAAAAGAATTCCCCAATACAGAGAGATTTGATCC---GCACTTTCTAGATAAAAATGGTTGTCTTAAGAAAACAGACTACTTAATTCCCTTCACCCTTGgtactaatattatagatgtgactagatcagtaagaatccttggatagagc Alignment from Pairagon GGCACCGCTGTGTTCCCGTTTCTGTCTTCCATCTTGTTGGATCAAAAGGAGTTTCCCAACCCAGAGAAGTTTGATCCAGGACACTTTCTGGATAAAAATGGCTGCTTCAAGAAAACAGACTACTTTGTTCCTTTCTCCCTCG gctagttaaatcccctggtgtacttcatctctgccatactctcactccagGGTACTGGTGTGTTCCCATTCCAGTCCTCCATTTTGTTGGATCAAAAAGAATTCCCCAATACAGAGAGATTTGATCC---GCACTTTCTAGATAAAAATGGTTGTCTTAAGAAAACAGACTACTTAATTCCCTTCACCCTTGgtactaatattatagatgtgactagatcagtaagaatccttggatagagc Alignment from Exonerate_protein2genome GGCACCGCTGTGTTCCCGTTTCTGTCTTCCATCTTGTTGGATCAAAAGGAGTTTCCCAACCCAGAGAAGTTTGATCCAGGACACTTTCTGGATAAAAATGGCTGCTTCAAGAAAACAGACTACTTTGTTCCTTTCTCCCTCG gctagttaaatcccctggtgtacttcatctctgccatactctcactccagGGTACTGGTGTGTTCCCATTCCAGTCCTCCATTTTGTTGGATCAAAAAGAATTCCCCAATACAGAGAGATTTGATCCG---CACTTTCTAGATAAAAATGGTTGTCTTAAGAAAACAGACTACTTAATTCCCTTCACCCTTGgtactaatattatagatgtgactagatcagtaagaatccttggatagagc Alignment from Exonerate_coding2genome GGCACCGCTGTGTTCCCGTTTCTGTCTTCCATCTTGTTGGATCAAAAGGAGTTTCCCAACCCAGAGAAGTTTGATCCAGGACACTTTCTGGATAAAAATGGCTGCTTCAAGAAAACAGACTACTTTGTTCCTTTCTCCCTCG gctagttaaatcccctggtgtacttcatctctgccatactctcactccagGGTACTGGTGTGTTCCCATTCCAGTCCTCCATTTTGTTGGATCAAAAAGAATTCCCCAATACAGAGAGATTTGATCCG---CACTTTCTAGATAAAAATGGTTGTCTTAAGAAAACAGACTACTTAATTCCCTTCACCCTTGgtactaatattatagatgtgactagatcagtaagaatccttggatagagc Alignment from GeneWise GGCACCGCTGTGTTCCCGTTTCTGTCTTCCATCTTGTTGGATCAAAAGGAGTTTCCCAACCCAGAGAAGTTTGATCCAGGACACTTTCTGGATAAAAATGGCTGCTTCAAGAAAACAGACTACTTTGTTCCTTTCTCCCTCG gctagttaaatcccctggtgtacttcatctctgccatactctcactccagGGTACTGGTGTGTTCCCATTCCAGTCCTCCATTTTGTTGGATCAAAAAGAATTCCCCAATACAGAGAGATTTGATCCG---CACTTTCTAGATAAAAATGGTTGTCTTAAGAAAACAGACTACTTAATTCCCTTCACCCTTGgtactaatattatagatgtgactagatcagtaagaatccttggatagagc #### Cyp2c44_ID8884_7 --> 2 - 0 Original Alignment ccAAAGTTCATGAAGAACTTGATCGTGTGATTGGACGCCACCAACCCCCCAGCATGAAGGACAAGATGAAGCTGCCCTATACAGATGCCGTGCTGCATGAGATTCAAAGATACATCACTCTCCTTCCTTCTAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTCAGACAC---TATGTCATCCCCAAG taccttggtaatcatgcctgggaatcaccttgtcattttggtctctgcagcaAAAGTTCATGAAGAACTTGACTGTGTTATTGGATGCCATCAACCCCCTAGCATGGAGGATAAGATGAGGTTGCCCTATATGGATGCTGTGCTTCATGAGATACAAAGGTACAGTACTCTTCTTCCATCAAGTCTACCCCATCCGGTGGTCCAGGACACAAAATTTAGGCAGCATTATGTCATTCCAAAAgtaagtacaactcccaaagacacaggaagagacataaattgtcacagatt Alignment from CESAR ccAAAGTTCATGAAGAACTTGATCGTGTGATTGGACGCCACCAACCCCCCAGCATGAAGGACAAGATGAAGCTGCCCTATACAGATGCCGTGCTGCATGAGATTCAAAGATACATCACTCTCCTTCCTTCTAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTCAGA---CACTATGTCATCCCCAAG taccttggtaatcatgcctgggaatcaccttgtcattttggtctctgcagcaAAAGTTCATGAAGAACTTGACTGTGTTATTGGATGCCATCAACCCCCTAGCATGGAGGATAAGATGAGGTTGCCCTATATGGATGCTGTGCTTCATGAGATACAAAGGTACAGTACTCTTCTTCCATCAAGTCTACCCCATCCGGTGGTCCAGGACACAAAATTTAGGCAGCATTATGTCATTCCAAAAgtaagtacaactcccaaagacacaggaagagacataaattgtcacagatt Alignment from Spaln_aa2Genome CCAAAGTTCATGAAGAACTTGATCGTGTGATTGGACGCCACCAACCCCCCAGCATGAAGGACAAGATGAAGCTGCCCTATACAGATGCCGTGCTGCATGAGATTCAAAGATACATCACTCTCCTTCCTTCTAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTCAGA---CACTATGTCATCCCCAAG taccttggtaatcatgcctgggaatcaccttgtcattttggtctctgcagCAAAAGTTCATGAAGAACTTGACTGTGTTATTGGATGCCATCAACCCCCTAGCATGGAGGATAAGATGAGGTTGCCCTATATGGATGCTGTGCTTCATGAGATACAAAGGTACAGTACTCTTCTTCCATCAAGTCTACCCCATCCGGTGGTCCAGGACACAAAATTTAGGCAGCATTATGTCATTCCAAAAgtaagtacaactcccaaagacacaggaagagacataaattgtcacagatt Alignment from Spaln_nt2Genome CCAAAGTTCATGAAGAACTTGATCGTGTGATTGGACGCCACCAACCCCCCAGCATGAAGGACAAGATGAAGCTGCCCTATACAGATGCCGTGCTGCATGAGATTCAAAGATACATCACTCTCCTTCCTTCTAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTCAGACAC---TATGTCATCCCCAAG taccttggtaatcatgcctgggaatcaccttgtcattttggtctctgcagCAAAAGTTCATGAAGAACTTGACTGTGTTATTGGATGCCATCAACCCCCTAGCATGGAGGATAAGATGAGGTTGCCCTATATGGATGCTGTGCTTCATGAGATACAAAGGTACAGTACTCTTCTTCCATCAAGTCTACCCCATCCGGTGGTCCAGGACACAAAATTTAGGCAGCATTATGTCATTCCAAAAgtaagtacaactcccaaagacacaggaagagacataaattgtcacagatt Alignment from Pairagon CCAAAGTTCATGAAGAACTTGATCGTGTGATTGGACGCCACCAACCCCCCAGCATGAAGGACAAGATGAAGCTGCCCTATACAGATGCCGTGCTGCATGAGATTCAAAGATACATCACTCTCCTTCCTTCTAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTCAG---ACACTATGTCATCCCCAAG taccttggtaatcatgcctgggaatcaccttgtcattttggtctctgcagCAAAAGTTCATGAAGAACTTGACTGTGTTATTGGATGCCATCAACCCCCTAGCATGGAGGATAAGATGAGGTTGCCCTATATGGATGCTGTGCTTCATGAGATACAAAGGTACAGTACTCTTCTTCCATCAAGTCTACCCCATCCGGTGGTCCAGGACACAAAATTTAGGCAGCATTATGTCATTCCAAAAgtaagtacaactcccaaagacacaggaagagacataaattgtcacagatt Alignment from Exonerate_protein2genome CCAAAGTTCATGAAGAACTTGATCGTGTGATTGGACGCCACCAACCCCCCAGCATGAAGGACAAGATGAAGCTGCCCTATACAGATGCCGTGCTGCATGAGATTCAAAGATACATCACTCTCCTTCCTTCTAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTCAGA---CACTATGTCATCCCCAAG taccttggtaatcatgcctgggaatcaccttgtcattttggtctctgcagCAAAAGTTCATGAAGAACTTGACTGTGTTATTGGATGCCATCAACCCCCTAGCATGGAGGATAAGATGAGGTTGCCCTATATGGATGCTGTGCTTCATGAGATACAAAGGTACAGTACTCTTCTTCCATCAAGTCTACCCCATCCGGTGGTCCAGGACACAAAATTTAGGCAGCATTATGTCATTCCAAAAgtaagtacaactcccaaagacacaggaagagacataaattgtcacagatt Alignment from Exonerate_coding2genome CCAAAGTTCATGAAGAACTTGATCGTGTGATTGGACGCCACCAACCCCCCAGCATGAAGGACAAGATGAAGCTGCCCTATACAGATGCCGTGCTGCATGAGATTCAAAGATACATCACTCTCCTTCCTTCTAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTCAGA---CACTATGTCATCCCCAAG taccttggtaatcatgcctgggaatcaccttgtcattttggtctctgcagCAAAAGTTCATGAAGAACTTGACTGTGTTATTGGATGCCATCAACCCCCTAGCATGGAGGATAAGATGAGGTTGCCCTATATGGATGCTGTGCTTCATGAGATACAAAGGTACAGTACTCTTCTTCCATCAAGTCTACCCCATCCGGTGGTCCAGGACACAAAATTTAGGCAGCATTATGTCATTCCAAAAgtaagtacaactcccaaagacacaggaagagacataaattgtcacagatt Alignment from GeneWise CCAAAGTTCATGAAGAACTTGATCGTGTGATTGGACGCCACCAACCCCCCAGCATGAAGGACAAGATGAAGCTGCCCTATACAGATGCCGTGCTGCATGAGATTCAAAGATACATCACTCTCCTTCCTTCTAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTCAGA---CACTATGTCATCCCCAAG taccttggtaatcatgcctgggaatcaccttgtcattttggtctctgcagCAAAAGTTCATGAAGAACTTGACTGTGTTATTGGATGCCATCAACCCCCTAGCATGGAGGATAAGATGAGGTTGCCCTATATGGATGCTGTGCTTCATGAGATACAAAGGTACAGTACTCTTCTTCCATCAAGTCTACCCCATCCGGTGGTCCAGGACACAAAATTTAGGCAGCATTATGTCATTCCAAAAgtaagtacaactcccaaagacacaggaagagacataaattgtcacagatt #### Cyp2c50_ID7862_3 --> 2 - 1 Original Alignment gcATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg aggggagtatgagtgcatagcagctaggttcctttgtgttttctctttagggATTATATTCAGTAAGGGAAATGTATGGAAAAATATAAGACATTTTGCACTTACCACTCTGCGAAATTTAGGCATTGGAAAAAGAAGCATTGAGGACCAGCTTCAGGAGGAAGCCCGTTGGCCTGTTGAGGAGCTTAGGAAGACCAATggtatgtcgaagtgcagacccagaacctagtgtgattttaatccagttttt Alignment from CESAR gcATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg aggggagtatgagtgcatagcagctaggttcctttgtgttttctctttagggATTATATTCAGTAAGGGAAATGTATGGAAAAATATAAGACATTTTGCACTTACCACTCTGCGAAATTTAGGCATTGGAAAAAGAAGCATTGAGGACCAGCTTCAGGAGGAAGCCCGTTGGCCTGTTGAGGAGCTTAGGAAGACCAATggtatgtcgaagtgcagacccagaacctagtgtgattttaatccagttttt Alignment from Spaln_aa2Genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG aggggagtatgagtgcatagcagctaggttcctttgtgttttctctttagGGATTATATTCAGTAAGGGAAATGTATGGAAAAATATAAGACATTTTGCACTTACCACTCTGCGAAATTTAGGCATTGGAAAAAGAAGCATTGAGGACCAGCTTCAGGAGGAAGCCCGTTGGCCTGTTGAGGAGCTTAGGAAGACCAATGgtatgtcgaagtgcagacccagaacctagtgtgattttaatccagttttt Alignment from Spaln_nt2Genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG aggggagtatgagtgcatagcagctaggttcctttgtgttttctctttagGGATTATATTCAGTAAGGGAAATGTATGGAAAAATATAAGACATTTTGCACTTACCACTCTGCGAAATTTAGGCATTGGAAAAAGAAGCATTGAGGACCAGCTTCAGGAGGAAGCCCGTTGGCCTGTTGAGGAGCTTAGGAAGACCAATGgtatgtcgaagtgcagacccagaacctagtgtgattttaatccagttttt Alignment from Pairagon GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG aggggagtatgagtgcatagcagctaggttcctttgtgttttctctttagGGATTATATTCAGTAAGGGAAATGTATGGAAAAATATAAGACATTTTGCACTTACCACTCTGCGAAATTTAGGCATTGGAAAAAGAAGCATTGAGGACCAGCTTCAGGAGGAAGCCCGTTGGCCTGTTGAGGAGCTTAGGAAGACCAATGgtatgtcgaagtgcagacccagaacctagtgtgattttaatccagttttt Alignment from Exonerate_protein2genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG aggggagtatgagtgcatagcagctaggttcctttgtgttttctctttagGGATTATATTCAGTAAGGGAAATGTATGGAAAAATATAAGACATTTTGCACTTACCACTCTGCGAAATTTAGGCATTGGAAAAAGAAGCATTGAGGACCAGCTTCAGGAGGAAGCCCGTTGGCCTGTTGAGGAGCTTAGGAAGACCAATGgtatgtcgaagtgcagacccagaacctagtgtgattttaatccagttttt Alignment from Exonerate_coding2genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG aggggagtatgagtgcatagcagctaggttcctttgtgttttctctttagGGATTATATTCAGTAAGGGAAATGTATGGAAAAATATAAGACATTTTGCACTTACCACTCTGCGAAATTTAGGCATTGGAAAAAGAAGCATTGAGGACCAGCTTCAGGAGGAAGCCCGTTGGCCTGTTGAGGAGCTTAGGAAGACCAATGgtatgtcgaagtgcagacccagaacctagtgtgattttaatccagttttt Alignment from GeneWise GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAAT- aggggagtatgagtgcatagcagctaggttcctttgtgttttctctttagGGATTATATTCAGTAAGGGAAATGTATGGAAAAATATAAGACATTTTGCACTTACCACTCTGCGAAATTTAGGCATTGGAAAAAGAAGCATTGAGGACCAGCTTCAGGAGGAAGCCCGTTGGCCTGTTGAGGAGCTTAGGAAGACCAATGgtatgtcgaagtgcagacccagaacctagtgtgattttaatccagttttt #### Cyp2c50_ID7866_7 --> 2 - 0 Original Alignment ctAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAGCCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATCCCCAAG aaagctgtttggaaatagggagaattcttctttctcttgttttgacttagccAAGGTTGAGGAGGAAATTGGCCATGTGGTCGGTAAGCACCGCAGACCGTGTATGCAGGATAGGACCCATATGCCTTACACTGATGCCATGATTCATGAGGTGCAGAGGTTCATTGACCTCAGCCCCAATAGTCTACCTCATGAAGTGACCTGTGACATTAGGTTCAGGAATTACTTTATTCCTAAGgtatgatggtgattgatcaggtgacaaggggccctgatcattatgtaggg Alignment from CESAR ctAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAGCCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATCCCCAAG aaagctgtttggaaatagggagaattcttctttctcttgttttgacttagccAAGGTTGAGGAGGAAATTGGCCATGTGGTCGGTAAGCACCGCAGACCGTGTATGCAGGATAGGACCCATATGCCTTACACTGATGCCATGATTCATGAGGTGCAGAGGTTCATTGACCTCAGCCCCAATAGTCTACCTCATGAAGTGACCTGTGACATTAGGTTCAGGAATTACTTTATTCCTAAGgtatgatggtgattgatcaggtgacaaggggccctgatcattatgtaggg Alignment from Spaln_aa2Genome CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAGCCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATCCCCAAG aaagctgtttggaaatagggagaattcttctttctcttgttttgacttagCCAAGGTTGAGGAGGAAATTGGCCATGTGGTCGGTAAGCACCGCAGACCGTGTATGCAGGATAGGACCCATATGCCTTACACTGATGCCATGATTCATGAGGTGCAGAGGTTCATTGACCTCAGCCCCAATAGTCTACCTCATGAAGTGACCTGTGACATTAGGTTCAGGAATTACTTTATTCCTAAGgtatgatggtgattgatcaggtgacaaggggccctgatcattatgtaggg Alignment from Spaln_nt2Genome CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAGCCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATCCCCAAG aaagctgtttggaaatagggagaattcttctttctcttgttttgacttagCCAAGGTTGAGGAGGAAATTGGCCATGTGGTCGGTAAGCACCGCAGACCGTGTATGCAGGATAGGACCCATATGCCTTACACTGATGCCATGATTCATGAGGTGCAGAGGTTCATTGACCTCAGCCCCAATAGTCTACCTCATGAAGTGACCTGTGACATTAGGTTCAGGAATTACTTTATTCCTAAGgtatgatggtgattgatcaggtgacaaggggccctgatcattatgtaggg Alignment from Pairagon CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAGCCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATCCCCAAG aaagctgtttggaaatagggagaattcttctttctcttgttttgacttagCCAAGGTTGAGGAGGAAATTGGCCATGTGGTCGGTAAGCACCGCAGACCGTGTATGCAGGATAGGACCCATATGCCTTACACTGATGCCATGATTCATGAGGTGCAGAGGTTCATTGACCTCAGCCCCAATAGTCTACCTCATGAAGTGACCTGTGACATTAGGTTCAGGAATTACTTTATTCCTAAGgtatgatggtgattgatcaggtgacaaggggccctgatcattatgtaggg Alignment from Exonerate_protein2genome CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAGCCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATCCCCAAG aaagctgtttggaaatagggagaattcttctttctcttgttttgacttagCCAAGGTTGAGGAGGAAATTGGCCATGTGGTCGGTAAGCACCGCAGACCGTGTATGCAGGATAGGACCCATATGCCTTACACTGATGCCATGATTCATGAGGTGCAGAGGTTCATTGACCTCAGCCCCAATAGTCTACCTCATGAAGTGACCTGTGACATTAGGTTCAGGAATTACTTTATTCCTAAGgtatgatggtgattgatcaggtgacaaggggccctgatcattatgtaggg Alignment from Exonerate_coding2genome CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAGCCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATCCCCAAG aaagctgtttggaaatagggagaattcttctttctcttgttttgacttagCCAAGGTTGAGGAGGAAATTGGCCATGTGGTCGGTAAGCACCGCAGACCGTGTATGCAGGATAGGACCCATATGCCTTACACTGATGCCATGATTCATGAGGTGCAGAGGTTCATTGACCTCAGCCCCAATAGTCTACCTCATGAAGTGACCTGTGACATTAGGTTCAGGAATTACTTTATTCCTAAGgtatgatggtgattgatcaggtgacaaggggccctgatcattatgtaggg Alignment from GeneWise CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAGCCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATCCCCAAG aaagctgtttggaaatagggagaattcttctttctcttgttttgacttagCCAAGGTTGAGGAGGAAATTGGCCATGTGGTCGGTAAGCACCGCAGACCGTGTATGCAGGATAGGACCCATATGCCTTACACTGATGCCATGATTCATGAGGTGCAGAGGTTCATTGACCTCAGCCCCAATAGTCTACCTCATGAAGTGACCTGTGACATTAGGTTCAGGAATTACTTTATTCCTAAGgtatgatggtgattgatcaggtgacaaggggccctgatcattatgtaggg #### Cyp2c54_ID7851_7 --> 2 - 0 Original Alignment ctAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACAAATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAACCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATTCCCAAG gcacacacaagcctacgctgcagtccttttttgttctttttcctttgtagctAAGGTGCAGGTAGAAATCGAGCATGTGATTGGCAAGCATAGAAGACCTTGCATGCAGGATAGACGGCACATGCCTTACACAAATGCTATAAATCACCAAGTTCAGAGATTTATTTATATTGTCCCTAATAATCTGCCTCACGAAGTGACTTGTGATATTAAATTTCGGAACTACTTTATACCCAAGgtaagtttcgtgatttgtgcctacttctccatacaccggtagaacctcaa Alignment from CESAR ctAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACAAATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAACCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATTCCCAAG gcacacacaagcctacgctgcagtccttttttgttctttttcctttgtagctAAGGTGCAGGTAGAAATCGAGCATGTGATTGGCAAGCATAGAAGACCTTGCATGCAGGATAGACGGCACATGCCTTACACAAATGCTATAAATCACCAAGTTCAGAGATTTATTTATATTGTCCCTAATAATCTGCCTCACGAAGTGACTTGTGATATTAAATTTCGGAACTACTTTATACCCAAGgtaagtttcgtgatttgtgcctacttctccatacaccggtagaacctcaa Alignment from Spaln_aa2Genome CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACAAATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAACCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATTCCCAAG gcacacacaagcctacgctgcagtccttttttgttctttttcctttgtagCTAAGGTGCAGGTAGAAATCGAGCATGTGATTGGCAAGCATAGAAGACCTTGCATGCAGGATAGACGGCACATGCCTTACACAAATGCTATAAATCACCAAGTTCAGAGATTTATTTATATTGTCCCTAATAATCTGCCTCACGAAGTGACTTGTGATATTAAATTTCGGAACTACTTTATACCCAAGgtaagtttcgtgatttgtgcctacttctccatacaccggtagaacctcaa Alignment from Spaln_nt2Genome CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACAAATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAACCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATTCCCAAG gcacacacaagcctacgctgcagtccttttttgttctttttcctttgtagCTAAGGTGCAGGTAGAAATCGAGCATGTGATTGGCAAGCATAGAAGACCTTGCATGCAGGATAGACGGCACATGCCTTACACAAATGCTATAAATCACCAAGTTCAGAGATTTATTTATATTGTCCCTAATAATCTGCCTCACGAAGTGACTTGTGATATTAAATTTCGGAACTACTTTATACCCAAGgtaagtttcgtgatttgtgcctacttctccatacaccggtagaacctcaa Alignment from Pairagon CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACAAATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAACCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATTCCCAAG gcacacacaagcctacgctgcagtccttttttgttctttttcctttgtagCTAAGGTGCAGGTAGAAATCGAGCATGTGATTGGCAAGCATAGAAGACCTTGCATGCAGGATAGACGGCACATGCCTTACACAAATGCTATAAATCACCAAGTTCAGAGATTTATTTATATTGTCCCTAATAATCTGCCTCACGAAGTGACTTGTGATATTAAATTTCGGAACTACTTTATACCCAAGgtaagtttcgtgatttgtgcctacttctccatacaccggtagaacctcaa Alignment from Exonerate_protein2genome CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACAAATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAACCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATTCCCAAG gcacacacaagcctacgctgcagtccttttttgttctttttcctttgtagCTAAGGTGCAGGTAGAAATCGAGCATGTGATTGGCAAGCATAGAAGACCTTGCATGCAGGATAGACGGCACATGCCTTACACAAATGCTATAAATCACCAAGTTCAGAGATTTATTTATATTGTCCCTAATAATCTGCCTCACGAAGTGACTTGTGATATTAAATTTCGGAACTACTTTATACCCAAGgtaagtttcgtgatttgtgcctacttctccatacaccggtagaacctcaa Alignment from Exonerate_coding2genome CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACAAATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAACCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATTCCCAAG gcacacacaagcctacgctgcagtccttttttgttctttttcctttgtagCTAAGGTGCAGGTAGAAATCGAGCATGTGATTGGCAAGCATAGAAGACCTTGCATGCAGGATAGACGGCACATGCCTTACACAAATGCTATAAATCACCAAGTTCAGAGATTTATTTATATTGTCCCTAATAATCTGCCTCACGAAGTGACTTGTGATATTAAATTTCGGAACTACTTTATACCCAAGgtaagtttcgtgatttgtgcctacttctccatacaccggtagaacctcaa Alignment from GeneWise CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACAAATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAACCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATTCCCAAG gcacacacaagcctacgctgcagtccttttttgttctttttcctttgtagCTAAGGTGCAGGTAGAAATCGAGCATGTGATTGGCAAGCATAGAAGACCTTGCATGCAGGATAGACGGCACATGCCTTACACAAATGCTATAAATCACCAAGTTCAGAGATTTATTTATATTGTCCCTAATAATCTGCCTCACGAAGTGACTTGTGATATTAAATTTCGGAACTACTTTATACCCAAGgtaagtttcgtgatttgtgcctacttctccatacaccggtagaacctcaa #### Cyp2c54_ID7854_4 --> 2 - 0 Original Alignment gcTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTAAACTTGTTGGAAAAACTGGATGAAATATCCAAGATTCTGAGCACCCCCTGGTTGCAG ggactggtaacactagataacactacttactattctctaaacctctgcaggaTCACCTTGTTACCCCACCTTCATCCTAGGCTGTGCTCCCTGCAATGTCATCTGTTCAATTATATTCCAGGAGTATTTAGATTACAAAGACCAGGATTTTTTAAACCTGTTGGCAAAATTGGATGAAATGTCCAAGATTCTGAGCACACCATGGCTGGAGgtgagttctcatctacaggcactgaatcctgtatagacaatccaattcag Alignment from CESAR gcTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTAAACTTGTTGGAAAAACTGGATGAAATATCCAAGATTCTGAGCACCCCCTGGTTGCAG ggactggtaacactagataacactacttactattctctaaacctctgcaggaTCACCTTGTTACCCCACCTTCATCCTAGGCTGTGCTCCCTGCAATGTCATCTGTTCAATTATATTCCAGGAGTATTTAGATTACAAAGACCAGGATTTTTTAAACCTGTTGGCAAAATTGGATGAAATGTCCAAGATTCTGAGCACACCATGGCTGGAGgtgagttctcatctacaggcactgaatcctgtatagacaatccaattcag Alignment from Spaln_aa2Genome GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTAAACTTGTTGGAAAAACTGGATGAAATATCCAAGATTCTGAGCACCCCCTGGTTGCAG ggactggtaacactagataacactacttactattctctaaacctctgcagGATCACCTTGTTACCCCACCTTCATCCTAGGCTGTGCTCCCTGCAATGTCATCTGTTCAATTATATTCCAGGAGTATTTAGATTACAAAGACCAGGATTTTTTAAACCTGTTGGCAAAATTGGATGAAATGTCCAAGATTCTGAGCACACCATGGCTGGAGgtgagttctcatctacaggcactgaatcctgtatagacaatccaattcag Alignment from Spaln_nt2Genome GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTAAACTTGTTGGAAAAACTGGATGAAATATCCAAGATTCTGAGCACCCCCTGGTTGCAG ggactggtaacactagataacactacttactattctctaaacctctgcagGATCACCTTGTTACCCCACCTTCATCCTAGGCTGTGCTCCCTGCAATGTCATCTGTTCAATTATATTCCAGGAGTATTTAGATTACAAAGACCAGGATTTTTTAAACCTGTTGGCAAAATTGGATGAAATGTCCAAGATTCTGAGCACACCATGGCTGGAGgtgagttctcatctacaggcactgaatcctgtatagacaatccaattcag Alignment from Pairagon GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTAAACTTGTTGGAAAAACTGGATGAAATATCCAAGATTCTGAGCACCCCCTGGTTGCAG ggactggtaacactagataacactacttactattctctaaacctctgcagGATCACCTTGTTACCCCACCTTCATCCTAGGCTGTGCTCCCTGCAATGTCATCTGTTCAATTATATTCCAGGAGTATTTAGATTACAAAGACCAGGATTTTTTAAACCTGTTGGCAAAATTGGATGAAATGTCCAAGATTCTGAGCACACCATGGCTGGAGgtgagttctcatctacaggcactgaatcctgtatagacaatccaattcag Alignment from Exonerate_protein2genome GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTAAACTTGTTGGAAAAACTGGATGAAATATCCAAGATTCTGAGCACCCCCTGGTTGCAG ggactggtaacactagataacactacttactattctctaaacctctgcagGATCACCTTGTTACCCCACCTTCATCCTAGGCTGTGCTCCCTGCAATGTCATCTGTTCAATTATATTCCAGGAGTATTTAGATTACAAAGACCAGGATTTTTTAAACCTGTTGGCAAAATTGGATGAAATGTCCAAGATTCTGAGCACACCATGGCTGGAGgtgagttctcatctacaggcactgaatcctgtatagacaatccaattcag Alignment from Exonerate_coding2genome GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTAAACTTGTTGGAAAAACTGGATGAAATATCCAAGATTCTGAGCACCCCCTGGTTGCAG ggactggtaacactagataacactacttactattctctaaacctctgcagGATCACCTTGTTACCCCACCTTCATCCTAGGCTGTGCTCCCTGCAATGTCATCTGTTCAATTATATTCCAGGAGTATTTAGATTACAAAGACCAGGATTTTTTAAACCTGTTGGCAAAATTGGATGAAATGTCCAAGATTCTGAGCACACCATGGCTGGAGgtgagttctcatctacaggcactgaatcctgtatagacaatccaattcag Alignment from GeneWise GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTAAACTTGTTGGAAAAACTGGATGAAATATCCAAGATTCTGAGCACCCCCTGGTTGCAG ggactggtaacactagataacactacttactattctctaaacctctgcagGATCACCTTGTTACCCCACCTTCATCCTAGGCTGTGCTCCCTGCAATGTCATCTGTTCAATTATATTCCAGGAGTATTTAGATTACAAAGACCAGGATTTTTTAAACCTGTTGGCAAAATTGGATGAAATGTCCAAGATTCTGAGCACACCATGGCTGGAGgtgagttctcatctacaggcactgaatcctgtatagacaatccaattcag #### Cyp2c55_ID7727_4 --> 2 - 0 Original Alignment gtTCACTCTGTGATCCCACATTCATCCTGAGCTGTGCTCCCTCCAATGTGATCTGTTCAGTTATTTTCCACAATCGTTTTGATTATAAAGATGAGAAGTTTCTTAACTTGATGGAGAGACTCAATGAAAACTTTAAAATCTTGAACTCCCCATGGATG---CAG agatccatggtaatcacttagcccctgattttttttacattttcttacaggaTTACTTTGTGATCCAGCTTTTATCCTCAGCTGTGCCCCCTCCAATGTGATTTGTTCAGTTATTTTCCATGAGTGTTTCGACTATAAAGATGGAAAGTTTCTCAATTTGATGGAGAGACTTAATGAGAACTTTAAAATTCTAAACTCCCCATGGATGATGCAGgtaagttaagccattcattacatatataaggaggtatatagcaaccacta Alignment from CESAR gtTCACTCTGTGATCCCACATTCATCCTGAGCTGTGCTCCCTCCAATGTGATCTGTTCAGTTATTTTCCACAATCGTTTTGATTATAAAGATGAGAAGTTTCTTAACTTGATGGAGAGACTCAATGAAAACTTTAAAATCTTGAACTCCCCATGG---ATGCAG agatccatggtaatcacttagcccctgattttttttacattttcttacaggaTTACTTTGTGATCCAGCTTTTATCCTCAGCTGTGCCCCCTCCAATGTGATTTGTTCAGTTATTTTCCATGAGTGTTTCGACTATAAAGATGGAAAGTTTCTCAATTTGATGGAGAGACTTAATGAGAACTTTAAAATTCTAAACTCCCCATGGATGATGCAGgtaagttaagccattcattacatatataaggaggtatatagcaaccacta Alignment from Spaln_aa2Genome GTTCACTCTGTGATCCCACATTCATCCTGAGCTGTGCTCCCTCCAATGTGATCTGTTCAGTTATTTTCCACAATCGTTTTGATTATAAAGATGAGAAGTTTCTTAACTTGATGGAGAGACTCAATGAAAACTTTAAAATCTTGAACTCCCCATGG---ATGCAG agatccatggtaatcacttagcccctgattttttttacattttcttacagGATTACTTTGTGATCCAGCTTTTATCCTCAGCTGTGCCCCCTCCAATGTGATTTGTTCAGTTATTTTCCATGAGTGTTTCGACTATAAAGATGGAAAGTTTCTCAATTTGATGGAGAGACTTAATGAGAACTTTAAAATTCTAAACTCCCCATGGATGATGCAGgtaagttaagccattcattacatatataaggaggtatatagcaaccacta Alignment from Spaln_nt2Genome GTTCACTCTGTGATCCCACATTCATCCTGAGCTGTGCTCCCTCCAATGTGATCTGTTCAGTTATTTTCCACAATCGTTTTGATTATAAAGATGAGAAGTTTCTTAACTTGATGGAGAGACTCAATGAAAACTTTAAAATCTTGAACTCCCCATGGATG---CAG agatccatggtaatcacttagcccctgattttttttacattttcttacagGATTACTTTGTGATCCAGCTTTTATCCTCAGCTGTGCCCCCTCCAATGTGATTTGTTCAGTTATTTTCCATGAGTGTTTCGACTATAAAGATGGAAAGTTTCTCAATTTGATGGAGAGACTTAATGAGAACTTTAAAATTCTAAACTCCCCATGGATGATGCAGgtaagttaagccattcattacatatataaggaggtatatagcaaccacta Alignment from Pairagon GTTCACTCTGTGATCCCACATTCATCCTGAGCTGTGCTCCCTCCAATGTGATCTGTTCAGTTATTTTCCACAATCGTTTTGATTATAAAGATGAGAAGTTTCTTAACTTGATGGAGAGACTCAATGAAAACTTTAAAATCTTGAACTCCCCATG---GATGCAG agatccatggtaatcacttagcccctgattttttttacattttcttacagGATTACTTTGTGATCCAGCTTTTATCCTCAGCTGTGCCCCCTCCAATGTGATTTGTTCAGTTATTTTCCATGAGTGTTTCGACTATAAAGATGGAAAGTTTCTCAATTTGATGGAGAGACTTAATGAGAACTTTAAAATTCTAAACTCCCCATGGATGATGCAGgtaagttaagccattcattacatatataaggaggtatatagcaaccacta Alignment from Exonerate_protein2genome GTTCACTCTGTGATCCCACATTCATCCTGAGCTGTGCTCCCTCCAATGTGATCTGTTCAGTTATTTTCCACAATCGTTTTGATTATAAAGATGAGAAGTTTCTTAACTTGATGGAGAGACTCAATGAAAACTTTAAAATCTTGAACTCCCCATGG---ATGCAG agatccatggtaatcacttagcccctgattttttttacattttcttacagGATTACTTTGTGATCCAGCTTTTATCCTCAGCTGTGCCCCCTCCAATGTGATTTGTTCAGTTATTTTCCATGAGTGTTTCGACTATAAAGATGGAAAGTTTCTCAATTTGATGGAGAGACTTAATGAGAACTTTAAAATTCTAAACTCCCCATGGATGATGCAGgtaagttaagccattcattacatatataaggaggtatatagcaaccacta Alignment from Exonerate_coding2genome GTTCACTCTGTGATCCCACATTCATCCTGAGCTGTGCTCCCTCCAATGTGATCTGTTCAGTTATTTTCCACAATCGTTTTGATTATAAAGATGAGAAGTTTCTTAACTTGATGGAGAGACTCAATGAAAACTTTAAAATCTTGAACTCCCCATGG---ATGCAG agatccatggtaatcacttagcccctgattttttttacattttcttacagGATTACTTTGTGATCCAGCTTTTATCCTCAGCTGTGCCCCCTCCAATGTGATTTGTTCAGTTATTTTCCATGAGTGTTTCGACTATAAAGATGGAAAGTTTCTCAATTTGATGGAGAGACTTAATGAGAACTTTAAAATTCTAAACTCCCCATGGATGATGCAGgtaagttaagccattcattacatatataaggaggtatatagcaaccacta Alignment from GeneWise GTTCACTCTGTGATCCCACATTCATCCTGAGCTGTGCTCCCTCCAATGTGATCTGTTCAGTTATTTTCCACAATCGTTTTGATTATAAAGATGAGAAGTTTCTTAACTTGATGGAGAGACTCAATGAAAACTTTAAAATCTTGAACTCCCCATGGATGCAGGTC agatccatggtaatcacttagcccctgattttttttacattttcttacagGATTACTTTGTGATCCAGCTTTTATCCTCAGCTGTGCCCCCTCCAATGTGATTTGTTCAGTTATTTTCCATGAGTGTTTCGACTATAAAGATGGAAAGTTTCTCAATTTGATGGAGAGACTTAATGAGAACTTTAAAATTCTAAACTCCCCATGGATGATGCAGgtaagttaagccattcattacatatataaggaggtatatagcaaccacta #### Cyp2c55_ID7728_5 --> 0 - 0 Original Alignment GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG actttggaaaattcagtgaggagttcagcttccctgccttgtttctgcagGTCTACAATGCCCTGCCTACTCTCATTAATTACCTCCCAGGAAGCCAAAACAAAGTAATAAAGAACTTTACCGAGATACAAAGTTATATTTTGGGACGAGTAAAAGAACACCAGGAAACATTGGACATGGAAAACCCCAGAGAATTCATTGATTGTTTTTTAATCAGAATGGAACAAgtatgctatacagctcagaaatttgctttccactcgtgaagtaccagcac Alignment from CESAR GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG actttggaaaattcagtgaggagttcagcttccctgccttgtttctgcagGTCTACAATGCCCTGCCTACTCTCATTAATTACCTCCCAGGAAGCCAAAACAAAGTAATAAAGAACTTTACCGAGATACAAAGTTATATTTTGGGACGAGTAAAAGAACACCAGGAAACATTGGACATGGAAAACCCCAGAGAATTCATTGATTGTTTTTTAATCAGAATGGAACAAgtatgctatacagctcagaaatttgctttccactcgtgaagtaccagcac Alignment from Spaln_aa2Genome GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG actttggaaaattcagtgaggagttcagcttccctgccttgtttctgcagGTCTACAATGCCCTGCCTACTCTCATTAATTACCTCCCAGGAAGCCAAAACAAAGTAATAAAGAACTTTACCGAGATACAAAGTTATATTTTGGGACGAGTAAAAGAACACCAGGAAACATTGGACATGGAAAACCCCAGAGAATTCATTGATTGTTTTTTAATCAGAATGGAACAAgtatgctatacagctcagaaatttgctttccactcgtgaagtaccagcac Alignment from Spaln_nt2Genome GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG actttggaaaattcagtgaggagttcagcttccctgccttgtttctgcagGTCTACAATGCCCTGCCTACTCTCATTAATTACCTCCCAGGAAGCCAAAACAAAGTAATAAAGAACTTTACCGAGATACAAAGTTATATTTTGGGACGAGTAAAAGAACACCAGGAAACATTGGACATGGAAAACCCCAGAGAATTCATTGATTGTTTTTTAATCAGAATGGAACAAgtatgctatacagctcagaaatttgctttccactcgtgaagtaccagcac Alignment from Pairagon GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG actttggaaaattcagtgaggagttcagcttccctgccttgtttctgcagGTCTACAATGCCCTGCCTACTCTCATTAATTACCTCCCAGGAAGCCAAAACAAAGTAATAAAGAACTTTACCGAGATACAAAGTTATATTTTGGGACGAGTAAAAGAACACCAGGAAACATTGGACATGGAAAACCCCAGAGAATTCATTGATTGTTTTTTAATCAGAATGGAACAAgtatgctatacagctcagaaatttgctttccactcgtgaagtaccagcac Alignment from Exonerate_protein2genome GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG actttggaaaattcagtgaggagttcagcttccctgccttgtttctgcagGTCTACAATGCCCTGCCTACTCTCATTAATTACCTCCCAGGAAGCCAAAACAAAGTAATAAAGAACTTTACCGAGATACAAAGTTATATTTTGGGACGAGTAAAAGAACACCAGGAAACATTGGACATGGAAAACCCCAGAGAATTCATTGATTGTTTTTTAATCAGAATGGAACAAgtatgctatacagctcagaaatttgctttccactcgtgaagtaccagcac Alignment from Exonerate_coding2genome GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG actttggaaaattcagtgaggagttcagcttccctgccttgtttctgcagGTCTACAATGCCCTGCCTACTCTCATTAATTACCTCCCAGGAAGCCAAAACAAAGTAATAAAGAACTTTACCGAGATACAAAGTTATATTTTGGGACGAGTAAAAGAACACCAGGAAACATTGGACATGGAAAACCCCAGAGAATTCATTGATTGTTTTTTAATCAGAATGGAACAAgtatgctatacagctcagaaatttgctttccactcgtgaagtaccagcac Alignment from GeneWise ---TACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG actttggaaaattcagtgaggagttcagcttccctgccttgtttctgcagGTCTACAATGCCCTGCCTACTCTCATTAATTACCTCCCAGGAAGCCAAAACAAAGTAATAAAGAACTTTACCGAGATACAAAGTTATATTTTGGGACGAGTAAAAGAACACCAGGAAACATTGGACATGGAAAACCCCAGAGAATTCATTGATTGTTTTTTAATCAGAATGGAACAAgtatgctatacagctcagaaatttgctttccactcgtgaagtaccagcac #### Cyp2c65_ID7736_2 --> 0 - 1 Original Alignment TTTTCAAAAGTCTATGGCCCTGTGTTCACTCTGTACTTGGGCAGGAATCCTGCTGTGGTGTTACATGGATATGAAGCTGTG---AAAGAAGCCTTTACTGATCATGGGGAGGAGTTTGCTGGAAGAGGAGTTTTTCCAGTGTTTGATAAGTTTAAGAAAAACTGCg ttctggttacatccttgcaagatggtaaacaatccctctttctttaaaagTTTTCAAAAGTATATGGCCATGTTTTTACTCTTTATTTGGGAAGGAATGCGGCTGTAGCGCTACATGGATACGAGTCAGCGGTGGAGGAAACCTTTACTGATCACAGGGAGGAATTTGCTGGTAGAGGGGTATTTCCAGTGTTC------TTT---------TGTggtgagtgttatcatatgtagcatacattccagtgtactgatatacacatg Alignment from CESAR TTTTCAAAAGTCTATGGCCCTGTGTTCACTCTGTACTTGGGCAGGAATCCTGCTGTGGTGTTACATGGATATGAA---GCTGTGAAAGAAGCCTTTACTGATCATGGGGAGGAGTTTGCTGGAAGAGGAGTTTTTCCAGTGTTTGATAAGTTTAAGAAAAACTGCg ttctggttacatccttgcaagatggtaaacaatccctctttctttaaaagTTTTCAAAAGTATATGGCCATGTTTTTACTCTTTATTTGGGAAGGAATGCGGCTGTAGCGCTACATGGATACGAGTCAGCGGTGGAGGAAACCTTTACTGATCACAGGGAGGAATTTGCTGGTAGAGGGGTATTTCCAGTGTTC------TTT---------TGTggtgagtgttatcatatgtagcatacattccagtgtactgatatacacatg Alignment from Spaln_aa2Genome TTTTCAAAAGTCTATGGCCCTGTGTTCACTCTGTACTTGGGCAGGAATCCTGCTGTGGTGTTACATGGATATGAA---GCTGTGAAAGAAGCCTTTACTGATCATGGGGAGGAGTTTGCTGGAAGAGGAGTTTTTCCAGTGTTTGATAAGTTTAAGAAAAACTGCG ttctggttacatccttgcaagatggtaaacaatccctctttctttaaaagTTTTCAAAAGTATATGGCCATGTTTTTACTCTTTATTTGGGAAGGAATGCGGCTGTAGCGCTACATGGATACGAGTCAGCGGTGGAGGAAACCTTTACTGATCACAGGGAGGAATTTGCTGGTAGAGGGGTATTTCCAGTGTTC------TTT---------TGTGgtgagtgttatcatatgtagcatacattccagtgtactgatatacacatg Alignment from Spaln_nt2Genome TTTTCAAAAGTCTATGGCCCTGTGTTCACTCTGTACTTGGGCAGGAATCCTGCTGTGGTGTTACATGGATATGA---AGCTGTGAAAGAAGCCTTTACTGATCATGGGGAGGAGTTTGCTGGAAGAGGAGTTTTTCCAGTGTTTGATAAGTTTAAGA ttctggttacatccttgcaagatggtaaacaatccctctttctttaaaagTTTTCAAAAGTATATGGCCATGTTTTTACTCTTTATTTGGGAAGGAATGCGGCTGTAGCGCTACATGGATACGAGTCAGCGGTGGAGGAAACCTTTACTGATCACAGGGAGGAATTTGCTGGTAGAGGGGTATTTCCAGTGTT------CTTTTGTGgtgagtgttatcatatgtagcatacattccagtgtactgatatacacatg Alignment from Pairagon TTTTCAAAAGTCTATGGCCCTGTGTTCACTCTGTACTTGGGCAGGAATCCTGCTGTGGTGTTACATGGATATGA---AGCTGTGAAAGAAGCCTTTACTGATCATGGGGAGGAGTTTGCTGGAAGAGGAGTTTTTCCAGTGTT------TG ttctggttacatccttgcaagatggtaaacaatccctctttctttaaaagTTTTCAAAAGTATATGGCCATGTTTTTACTCTTTATTTGGGAAGGAATGCGGCTGTAGCGCTACATGGATACGAGTCAGCGGTGGAGGAAACCTTTACTGATCACAGGGAGGAATTTGCTGGTAGAGGGGTATTTCCAGTGTTCTTTTGTGgtgagtgttatcatatgtagcatacattccagtgtactgatatacacatg Alignment from Exonerate_protein2genome AATTTTTCAAAAGTCTATGGCCCTGTGTTCACTCTGTACTTGGGCAGGAATCCTGCTGTGGTGTTACATGGATATGAA---GCTGTGAAAGAAGCCTTTACTGATCATGGGGAGGAGTTTGCTGGAAGAGGAGTTTTTCCAGTGTTTGATAAGT ttctggttacatccttgcaagatggtaaacaatccctctttctttaaAAGTTTTCAAAAGTATATGGCCATGTTTTTACTCTTTATTTGGGAAGGAATGCGGCTGTAGCGCTACATGGATACGAGTCAGCGGTGGAGGAAACCTTTACTGATCACAGGGAGGAATTTGCTGGTAGAGGGGTATTTCCAGTGTTCTTTTGTGgtgagtgttatcatatgtagcatacattccagtgtactgatatacacatg Alignment from Exonerate_coding2genome AATTTTTCAAAAGTCTATGGCCCTGTGTTCACTCTGTACTTGGGCAGGAATCCTGCTGTGGTGTTACATGGATATGAA---GCTGTGAAAGAAGCCTTTACTGATCATGGGGAGGAGTTTGCTGGAAGAGGAGTTTTTCCAGTGTTTGATAAGT ttctggttacatccttgcaagatggtaaacaatccctctttctttaaAAGTTTTCAAAAGTATATGGCCATGTTTTTACTCTTTATTTGGGAAGGAATGCGGCTGTAGCGCTACATGGATACGAGTCAGCGGTGGAGGAAACCTTTACTGATCACAGGGAGGAATTTGCTGGTAGAGGGGTATTTCCAGTGTTCTTTTGTGgtgagtgttatcatatgtagcatacattccagtgtactgatatacacatg Alignment from GeneWise TTTTCAAAAGTCTATGGCCCTGTGTTCACTCTGTACTTGGGCAGGAATCCTGCTGTGGTGTTACATGGATATGAA---GCTGTGAAAGAAGCCTTTACTGATCATGGGGAGGAGTTTGCTGGAAGAGGAGTTTTTCCAGTGTTTGATAAGTTTAAGAAAAACTGCG ttctggttacatccttgcaagatggtaaacaatccctctttctttaaaagTTTTCAAAAGTATATGGCCATGTTTTTACTCTTTATTTGGGAAGGAATGCGGCTGTAGCGCTACATGGATACGAGTCAGCGGTGGAGGAAACCTTTACTGATCACAGGGAGGAATTTGCTGGTAGAGGGGTATTTCCAGTGTTCTTT---------------TGTGgtgagtgttatcatatgtagcatacattccagtgtactgatatacacatg #### Cyp2c65_ID7737_3 --> 2 - 1 Original Alignment ggGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAg gctcggttgtaggtcagactccccccacaaaaaagtgcttttcatttcagggGCTGTTTTCAGCAGTGGGAGAACCTGGAAAGGGATGAGGGGCTTCTCACTCATGACTCTGCGCAACTTTGGGATGGGGCGGAGAAGTATTGAGGATCGAATTCAGGAGGAAGCCCGATGTCTTGTTGATAAACTTAGGAAAACCAAAggtaacatttacattctttgtatttttgaccttcacttcctcactgtggtc Alignment from CESAR ggGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAg gctcggttgtaggtcagactccccccacaaaaaagtgcttttcatttcagggGCTGTTTTCAGCAGTGGGAGAACCTGGAAAGGGATGAGGGGCTTCTCACTCATGACTCTGCGCAACTTTGGGATGGGGCGGAGAAGTATTGAGGATCGAATTCAGGAGGAAGCCCGATGTCTTGTTGATAAACTTAGGAAAACCAAAggtaacatttacattctttgtatttttgaccttcacttcctcactgtggtc Alignment from Spaln_aa2Genome GGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG gctcggttgtaggtcagactccccccacaaaaaagtgcttttcatttcagGGGCTGTTTTCAGCAGTGGGAGAACCTGGAAAGGGATGAGGGGCTTCTCACTCATGACTCTGCGCAACTTTGGGATGGGGCGGAGAAGTATTGAGGATCGAATTCAGGAGGAAGCCCGATGTCTTGTTGATAAACTTAGGAAAACCAAAGgtaacatttacattctttgtatttttgaccttcacttcctcactgtggtc Alignment from Spaln_nt2Genome GGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG gctcggttgtaggtcagactccccccacaaaaaagtgcttttcatttcagGGGCTGTTTTCAGCAGTGGGAGAACCTGGAAAGGGATGAGGGGCTTCTCACTCATGACTCTGCGCAACTTTGGGATGGGGCGGAGAAGTATTGAGGATCGAATTCAGGAGGAAGCCCGATGTCTTGTTGATAAACTTAGGAAAACCAAAGgtaacatttacattctttgtatttttgaccttcacttcctcactgtggtc Alignment from Pairagon ATAAGTTTAAGAAAAACTGCGGGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG gctcggttgtaggtcagactccccccacaaaaaagtgcttttcatttcag---------------------GGGCTGTTTTCAGCAGTGGGAGAACCTGGAAAGGGATGAGGGGCTTCTCACTCATGACTCTGCGCAACTTTGGGATGGGGCGGAGAAGTATTGAGGATCGAATTCAGGAGGAAGCCCGATGTCTTGTTGATAAACTTAGGAAAACCAAAGgtaacatttacattctttgtatttttgaccttcacttcctcactgtggtc Alignment from Exonerate_protein2genome TAAGTTTAAGAAAAACTGCGGGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG gctcggttgtaggtcagactccccccacaaAAAAGTGCTTTTCATTTCAGGGGCTGTTTTCAGCAGTGGGAGAACCTGGAAAGGGATGAGGGGCTTCTCACTCATGACTCTGCGCAACTTTGGGATGGGGCGGAGAAGTATTGAGGATCGAATTCAGGAGGAAGCCCGATGTCTTGTTGATAAACTTAGGAAAACCAAAGgtaacatttacattctttgtatttttgaccttcacttcctcactgtggtc Alignment from Exonerate_coding2genome TAAGTTTAAGAAAAACTGCGGGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG gctcggttgtaggtcagactccccccacaaAAAAGTGCTTTTCATTTCAGGGGCTGTTTTCAGCAGTGGGAGAACCTGGAAAGGGATGAGGGGCTTCTCACTCATGACTCTGCGCAACTTTGGGATGGGGCGGAGAAGTATTGAGGATCGAATTCAGGAGGAAGCCCGATGTCTTGTTGATAAACTTAGGAAAACCAAAGgtaacatttacattctttgtatttttgaccttcacttcctcactgtggtc Alignment from GeneWise TTAAGAAAAACTGCGGGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG gctcggttgtaggtcagactccccccacaaaaaagTGCTTTTCATTTCAGGGGCTGTTTTCAGCAGTGGGAGAACCTGGAAAGGGATGAGGGGCTTCTCACTCATGACTCTGCGCAACTTTGGGATGGGGCGGAGAAGTATTGAGGATCGAATTCAGGAGGAAGCCCGATGTCTTGTTGATAAACTTAGGAAAACCAAAGgtaacatttacattctttgtatttttgaccttcacttcctcactgtggtc #### Cyp2c66_ID7749_4 --> 2 - 0 Original Alignment gtGTACCCTGTGATCCCACCTTCATTCTCGGCTGTGCTCCTTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTTGATTATAAAGATCAGGAATTTCTTACCTTTATAGACATCTTAAATGAAAATGTAGAGATTCTGAGTTCCCCTTGGATTCAG tatacagatatatattttagggtggcatgtagctcctctctgtgtcgcagatGTGCCTTGTGACTCCACCTTTATCCTTGGCTGTGCTCCTTGTAACGTCATCTGCTCTGTTGTATTCCAGAATCGACTTTATTATAAGGATCAGGAGTTCCCAACTTTCACAGATATCTTAAATGAGAATATAGAGATTTTGAGTTCTCCTTGGATCCAGgtaagtggtcaggtgtgtcaggtgtgttgaggttccatcatacagacaca Alignment from CESAR gtGTACCCTGTGATCCCACCTTCATTCTCGGCTGTGCTCCTTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTTGATTATAAAGATCAGGAATTTCTTACCTTTATAGACATCTTAAATGAAAATGTAGAGATTCTGAGTTCCCCTTGGATTCAG tatacagatatatattttagggtggcatgtagctcctctctgtgtcgcagatGTGCCTTGTGACTCCACCTTTATCCTTGGCTGTGCTCCTTGTAACGTCATCTGCTCTGTTGTATTCCAGAATCGACTTTATTATAAGGATCAGGAGTTCCCAACTTTCACAGATATCTTAAATGAGAATATAGAGATTTTGAGTTCTCCTTGGATCCAGgtaagtggtcaggtgtgtcaggtgtgttgaggttccatcatacagacaca Alignment from Spaln_aa2Genome GTGTACCCTGTGATCCCACCTTCATTCTCGGCTGTGCTCCTTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTTGATTATAAAGATCAGGAATTTCTTACCTTTATAGACATCTTAAATGAAAATGTAGAGATTCTGAGTTCCCCTTGGATTCAG tatacagatatatattttagggtggcatgtagctcctctctgtgtcgcagATGTGCCTTGTGACTCCACCTTTATCCTTGGCTGTGCTCCTTGTAACGTCATCTGCTCTGTTGTATTCCAGAATCGACTTTATTATAAGGATCAGGAGTTCCCAACTTTCACAGATATCTTAAATGAGAATATAGAGATTTTGAGTTCTCCTTGGATCCAGgtaagtggtcaggtgtgtcaggtgtgttgaggttccatcatacagacaca Alignment from Spaln_nt2Genome GTGTACCCTGTGATCCCACCTTCATTCTCGGCTGTGCTCCTTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTTGATTATAAAGATCAGGAATTTCTTACCTTTATAGACATCTTAAATGAAAATGTAGAGATTCTGAGTTCCCCTTGGATTCAG tatacagatatatattttagggtggcatgtagctcctctctgtgtcgcagATGTGCCTTGTGACTCCACCTTTATCCTTGGCTGTGCTCCTTGTAACGTCATCTGCTCTGTTGTATTCCAGAATCGACTTTATTATAAGGATCAGGAGTTCCCAACTTTCACAGATATCTTAAATGAGAATATAGAGATTTTGAGTTCTCCTTGGATCCAGgtaagtggtcaggtgtgtcaggtgtgttgaggttccatcatacagacaca Alignment from Pairagon GTGTACCCTGTGATCCCACCTTCATTCTCGGCTGTGCTCCTTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTTGATTATAAAGATCAGGAATTTCTTACCTTTATAGACATCTTAAATGAAAATGTAGAGATTCTGAGTTCCCCTTGGATTCAG tatacagatatatattttagggtggcatgtagctcctctctgtgtcgcagATGTGCCTTGTGACTCCACCTTTATCCTTGGCTGTGCTCCTTGTAACGTCATCTGCTCTGTTGTATTCCAGAATCGACTTTATTATAAGGATCAGGAGTTCCCAACTTTCACAGATATCTTAAATGAGAATATAGAGATTTTGAGTTCTCCTTGGATCCAGgtaagtggtcaggtgtgtcaggtgtgttgaggttccatcatacagacaca Alignment from Exonerate_protein2genome GTGTACCCTGTGATCCCACCTTCATTCTCGGCTGTGCTCCTTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTTGATTATAAAGATCAGGAATTTCTTACCTTTATAGACATCTTAAATGAAAATGTAGAGATTCTGAGTTCCCCTTGGATTCAG tatacagatatatattttagggtggcatgtagctcctctctgtgtcgcagATGTGCCTTGTGACTCCACCTTTATCCTTGGCTGTGCTCCTTGTAACGTCATCTGCTCTGTTGTATTCCAGAATCGACTTTATTATAAGGATCAGGAGTTCCCAACTTTCACAGATATCTTAAATGAGAATATAGAGATTTTGAGTTCTCCTTGGATCCAGgtaagtggtcaggtgtgtcaggtgtgttgaggttccatcatacagacaca Alignment from Exonerate_coding2genome GTGTACCCTGTGATCCCACCTTCATTCTCGGCTGTGCTCCTTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTTGATTATAAAGATCAGGAATTTCTTACCTTTATAGACATCTTAAATGAAAATGTAGAGATTCTGAGTTCCCCTTGGATTCAG tatacagatatatattttagggtggcatgtagctcctctctgtgtcgcagATGTGCCTTGTGACTCCACCTTTATCCTTGGCTGTGCTCCTTGTAACGTCATCTGCTCTGTTGTATTCCAGAATCGACTTTATTATAAGGATCAGGAGTTCCCAACTTTCACAGATATCTTAAATGAGAATATAGAGATTTTGAGTTCTCCTTGGATCCAGgtaagtggtcaggtgtgtcaggtgtgttgaggttccatcatacagacaca Alignment from GeneWise GTGTACCCTGTGATCCCACCTTCATTCTCGGCTGTGCTCCTTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTTGATTATAAAGATCAGGAATTTCTTACCTTTATAGACATCTTAAATGAAAATGTAGAGATTCTGAGTTCCCCTTGGATTCAG tatacagatatatattttagggtggcatgtagctcctctctgtgtcgcagATGTGCCTTGTGACTCCACCTTTATCCTTGGCTGTGCTCCTTGTAACGTCATCTGCTCTGTTGTATTCCAGAATCGACTTTATTATAAGGATCAGGAGTTCCCAACTTTCACAGATATCTTAAATGAGAATATAGAGATTTTGAGTTCTCCTTGGATCCAGgtaagtggtcaggtgtgtcaggtgtgttgaggttccatcatacagacaca #### Cyp2c66_ID7751_6 --> 0 - 1 Original Alignment GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGATCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTACTCTCTGCTGCTCCTGCTCAAGTATCCAGAAGTCACAg agttggcctgtggattaacaatcctcttaacacgtgttcctgtcttgtagGATAAACACAACCCAAAAACTGAGTTCACTTGTGAGAACTTGGTCTTCACAGCTTCTGATCTTTTTGCTGCTGGGGCAGAGACAACAAGTATGACCCTAAGATACTTCCTGCTGCTCCTACTCAAGTATCCAGAGGTGACAggtaaggtgttggacattatacaaaatctcacttcaaatagtctctggctt Alignment from CESAR GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGATCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTACTCTCTGCTGCTCCTGCTCAAGTATCCAGAAGTCACAg agttggcctgtggattaacaatcctcttaacacgtgttcctgtcttgtagGATAAACACAACCCAAAAACTGAGTTCACTTGTGAGAACTTGGTCTTCACAGCTTCTGATCTTTTTGCTGCTGGGGCAGAGACAACAAGTATGACCCTAAGATACTTCCTGCTGCTCCTACTCAAGTATCCAGAGGTGACAggtaaggtgttggacattatacaaaatctcacttcaaatagtctctggctt Alignment from Spaln_aa2Genome GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGATCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTACTCTCTGCTGCTCCTGCTCAAGTATCCAGAAGTCACAG agttggcctgtggattaacaatcctcttaacacgtgttcctgtcttgtagGATAAACACAACCCAAAAACTGAGTTCACTTGTGAGAACTTGGTCTTCACAGCTTCTGATCTTTTTGCTGCTGGGGCAGAGACAACAAGTATGACCCTAAGATACTTCCTGCTGCTCCTACTCAAGTATCCAGAGGTGACAGgtaaggtgttggacattatacaaaatctcacttcaaatagtctctggctt Alignment from Spaln_nt2Genome GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGATCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTACTCTCTGCTGCTCCTGCTCAAGTATCCAGAAGTCACAG agttggcctgtggattaacaatcctcttaacacgtgttcctgtcttgtagGATAAACACAACCCAAAAACTGAGTTCACTTGTGAGAACTTGGTCTTCACAGCTTCTGATCTTTTTGCTGCTGGGGCAGAGACAACAAGTATGACCCTAAGATACTTCCTGCTGCTCCTACTCAAGTATCCAGAGGTGACAGgtaaggtgttggacattatacaaaatctcacttcaaatagtctctggctt Alignment from Pairagon GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGATCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTACTCTCTGCTGCTCCTGCTCAAGTATCCAGAAGTCACAG agttggcctgtggattaacaatcctcttaacacgtgttcctgtcttgtagGATAAACACAACCCAAAAACTGAGTTCACTTGTGAGAACTTGGTCTTCACAGCTTCTGATCTTTTTGCTGCTGGGGCAGAGACAACAAGTATGACCCTAAGATACTTCCTGCTGCTCCTACTCAAGTATCCAGAGGTGACAGgtaaggtgttggacattatacaaaatctcacttcaaatagtctctggctt Alignment from Exonerate_protein2genome GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGATCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTACTCTCTGCTGCTCCTGCTCAAGTATCCAGAAGTCACAG agttggcctgtggattaacaatcctcttaacacgtgttcctgtcttgtagGATAAACACAACCCAAAAACTGAGTTCACTTGTGAGAACTTGGTCTTCACAGCTTCTGATCTTTTTGCTGCTGGGGCAGAGACAACAAGTATGACCCTAAGATACTTCCTGCTGCTCCTACTCAAGTATCCAGAGGTGACAGgtaaggtgttggacattatacaaaatctcacttcaaatagtctctggctt Alignment from Exonerate_coding2genome GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGATCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTACTCTCTGCTGCTCCTGCTCAAGTATCCAGAAGTCACAG agttggcctgtggattaacaatcctcttaacacgtgttcctgtcttgtagGATAAACACAACCCAAAAACTGAGTTCACTTGTGAGAACTTGGTCTTCACAGCTTCTGATCTTTTTGCTGCTGGGGCAGAGACAACAAGTATGACCCTAAGATACTTCCTGCTGCTCCTACTCAAGTATCCAGAGGTGACAGgtaaggtgttggacattatacaaaatctcacttcaaatagtctctggctt Alignment from GeneWise GAAAAGCACAACCCAAAGACGGAGTTTACTTGTGAGAACTTGATCTTCACAGCATCTGATCTGTTTGCTGCTGGGACAGAGACAACAAGCACAACCCTGAGGTACTCTCTGCTGCTCCTGCTCAAGTATCCAGAAGTCACAG agttggcctgtggattaacaatcctcttaacacgtgttcctgtcttgtagGATAAACACAACCCAAAAACTGAGTTCACTTGTGAGAACTTGGTCTTCACAGCTTCTGATCTTTTTGCTGCTGGGGCAGAGACAACAAGTATGACCCTAAGATACTTCCTGCTGCTCCTACTCAAGTATCCAGAGGTGACAGgtaaggtgttggacattatacaaaatctcacttcaaatagtctctggctt #### Cyp2c66_ID7753_8 --> 0 - 1 Original Alignment GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCTCAACCCAGAGAGGTTTGATCCTAGTCACTTTCTGGATGAGAGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAg acaagatccaatatgacaaacacctgatacctgttctgacatctatacagGGCTCTACTGTGATTGCATCACTAACTCCTGTGCTGTATGATGAGGAGGAGTTTCTAAACCCTGAAAGGTTT---CCCAGCCACCTTCTTGATGAGAGTGGTAAATTTGGAAAGACTGATTACTTTTTTCCCTTCTCAACAggtaagttgaatgatgatttggggcctcttcaactttgagaatatggtgaa Alignment from CESAR GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCTCAACCCAGAGAGGTTTGATCCTAGTCACTTTCTGGATGAGAGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAg acaagatccaatatgacaaacacctgatacctgttctgacatctatacagGGCTCTACTGTGATTGCATCACTAACTCCTGTGCTGTATGATGAGGAGGAGTTTCTAAACCCTGAAAGGTTT---CCCAGCCACCTTCTTGATGAGAGTGGTAAATTTGGAAAGACTGATTACTTTTTTCCCTTCTCAACAggtaagttgaatgatgatttggggcctcttcaactttgagaatatggtgaa Alignment from Spaln_aa2Genome GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCTCAACCCAGAGAGGTTTGATCCTAGTCACTTTCTGGATGAGAGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAG acaagatccaatatgacaaacacctgatacctgttctgacatctatacagGGCTCTACTGTGATTGCATCACTAACTCCTGTGCTGTATGATGAGGAGGAGTTTCTAAACCCTGAAAGGTTT---CCCAGCCACCTTCTTGATGAGAGTGGTAAATTTGGAAAGACTGATTACTTTTTTCCCTTCTCAACAGgtaagttgaatgatgatttggggcctcttcaactttgagaatatggtgaa Alignment from Spaln_nt2Genome GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCTCAACCCAGAGAGGTTTGATCCTAGTCACTTTCTGGATGAGAGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAG acaagatccaatatgacaaacacctgatacctgttctgacatctatacagGGCTCTACTGTGATTGCATCACTAACTCCTGTGCTGTATGATGAGGAGGAGTTTCTAAACCCTGAAAGGTT---TCCCAGCCACCTTCTTGATGAGAGTGGTAAATTTGGAAAGACTGATTACTTTTTTCCCTTCTCAACAGgtaagttgaatgatgatttggggcctcttcaactttgagaatatggtgaa Alignment from Pairagon GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCTCAACCCAGAGAGGTTTGATCCTAGTCACTTTCTGGATGAGAGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAG acaagatccaatatgacaaacacctgatacctgttctgacatctatacagGGCTCTACTGTGATTGCATCACTAACTCCTGTGCTGTATGATGAGGAGGAGTTTCTAAACCCTGAAAGGTT---TCCCAGCCACCTTCTTGATGAGAGTGGTAAATTTGGAAAGACTGATTACTTTTTTCCCTTCTCAACAGgtaagttgaatgatgatttggggcctcttcaactttgagaatatggtgaa Alignment from Exonerate_protein2genome GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCTCAACCCAGAGAGGTTTGATCCTAGTCACTTTCTGGATGAGAGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAG acaagatccaatatgacaaacacctgatacctgttctgacatctatacagGGCTCTACTGTGATTGCATCACTAACTCCTGTGCTGTATGATGAGGAGGAGTTTCTAAACCCTGAAAGGTTT---CCCAGCCACCTTCTTGATGAGAGTGGTAAATTTGGAAAGACTGATTACTTTTTTCCCTTCTCAACAGgtaagttgaatgatgatttggggcctcttcaactttgagaatatggtgaa Alignment from Exonerate_coding2genome GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCTCAACCCAGAGAGGTTTGATCCTAGTCACTTTCTGGATGAGAGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAG acaagatccaatatgacaaacacctgatacctgttctgacatctatacagGGCTCTACTGTGATTGCATCACTAACTCCTGTGCTGTATGATGAGGAGGAGTTTCTAAACCCTGAAAGGTTT---CCCAGCCACCTTCTTGATGAGAGTGGTAAATTTGGAAAGACTGATTACTTTTTTCCCTTCTCAACAGgtaagttgaatgatgatttggggcctcttcaactttgagaatatggtgaa Alignment from GeneWise GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCTCAACCCAGAGAGGTTTGATCCTAGTCACTTTCTGGATGAGAGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAGGAAA acaagatccaatatgacaaacacctgatacctgttctgacatctatacagGGCTCTACTGTGATTGCATCACTAACTCCTGTGCTGTATGATGAGGAGGAGTTTCTAAACCCTGAAAGGTTT---CCCAGCCACCTTCTTGATGAGAGTGGTAAATTTGGAAAGACTGATTACTTTTTTCCCTTCTCAACAGGTAAgttgaatgatgatttggggcctcttcaactttgagaatatggtgaa #### Cyp2c67_ID7794_8 --> 0 - 1 Original Alignment GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAg tttgaggtgtctgtgctattcaccaatgactcccccccccccgcccccagGGATCACAGGTAATGACATCATTGACATCTGTGCTGCATGAAAGCACTGAC---CCCAATCCAGAAGTGTTTGACCCTGGTCATTTTTTAGATGACAATGGGAATTTCAAGAAAAGTCACTACCTTGTTCCATTGTCAACAggttcgtgacccacttatgccatttaggtaggtcaggagaatcaggaccaa Alignment from CESAR GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAg tttgaggtgtctgtgctattcaccaatgactcccccccccccgcccccagGGATCACAGGTAATGACATCATTGACATCTGTGCTGCATGAAAGCACTGAC---CCCAATCCAGAAGTGTTTGACCCTGGTCATTTTTTAGATGACAATGGGAATTTCAAGAAAAGTCACTACCTTGTTCCATTGTCAACAggttcgtgacccacttatgccatttaggtaggtcaggagaatcaggaccaa Alignment from Spaln_aa2Genome GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG tttgaggtgtctgtgctattcaccaatgactcccccccccccgcccccagGGATCACAGGTAATGACATCATTGACATCTGTGCTGCATGAAAGCACTGAC---CCCAATCCAGAAGTGTTTGACCCTGGTCATTTTTTAGATGACAATGGGAATTTCAAGAAAAGTCACTACCTTGTTCCATTGTCAACAGgttcgtgacccacttatgccatttaggtaggtcaggagaatcaggaccaa Alignment from Spaln_nt2Genome GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG tttgaggtgtctgtgctattcaccaatgactcccccccccccgcccccagGGATCACAGGTAATGACATCATTGACATCTGTGCTGCATGAAAGCACTGA---CCCCAATCCAGAAGTGTTTGACCCTGGTCATTTTTTAGATGACAATGGGAATTTCAAGAAAAGTCACTACCTTGTTCCATTGTCAACAGgttcgtgacccacttatgccatttaggtaggtcaggagaatcaggaccaa Alignment from Pairagon GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG tttgaggtgtctgtgctattcaccaatgactcccccccccccgcccccagGGATCACAGGTAATGACATCATTGACATCTGTGCTGCATGAAAGCACTGA---CCCCAATCCAGAAGTGTTTGACCCTGGTCATTTTTTAGATGACAATGGGAATTTCAAGAAAAGTCACTACCTTGTTCCATTGTCAACAGgttcgtgacccacttatgccatttaggtaggtcaggagaatcaggaccaa Alignment from Exonerate_protein2genome GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG tttgaggtgtctgtgctattcaccaatgactcccccccccccgcccccagGGATCACAGGTAATGACATCATTGACATCTGTGCTGCATGAAAGCACTGAC---CCCAATCCAGAAGTGTTTGACCCTGGTCATTTTTTAGATGACAATGGGAATTTCAAGAAAAGTCACTACCTTGTTCCATTGTCAACAGgttcgtgacccacttatgccatttaggtaggtcaggagaatcaggaccaa Alignment from Exonerate_coding2genome GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG tttgaggtgtctgtgctattcaccaatgactcccccccccccgcccccagGGATCACAGGTAATGACATCATTGACATCTGTGCTGCATGAAAGCACTGAC---CCCAATCCAGAAGTGTTTGACCCTGGTCATTTTTTAGATGACAATGGGAATTTCAAGAAAAGTCACTACCTTGTTCCATTGTCAACAGgttcgtgacccacttatgccatttaggtaggtcaggagaatcaggaccaa Alignment from GeneWise GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG tttgaggtgtctgtgctattcaccaatgactcccccccccccgcccccagGGATCACAGGTAATGACATCATTGACATCTGTGCTGCATGAAAGCACTGAC---CCCAATCCAGAAGTGTTTGACCCTGGTCATTTTTTAGATGACAATGGGAATTTCAAGAAAAGTCACTACCTTGTTCCATTGTCAACAGgttcgtgacccacttatgccatttaggtaggtcaggagaatcaggaccaa #### Cyp2c67_ID7795_7 --> 2 - 0 Original Alignment ctAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCATGAAGTAACCTGTGAC---------------ACTAAGTTCAGAAACTACTTCATCCCCAAG ggtgctgtcttagtagcaaggcacatgcggtccttttgtgttcctcatagctAAAGTTCAGGAAGAGAGTGACAACTTGATTGGAAGACACAGGAGCCCTTGTATGCAAGACAGGAACCAT---------ACAACTGTAATGGTACAA---ATTCAACAGTATGTTGACCTTGGCCTAATTAGTTTGGTACATGAAGTCTCATGTGATGAAGTCACCTGTGACATAAAGCTTGGCAACTACTTCATCCCTAAAgtcaggtttacttcccagtatcccgtctacatgcccttcataggataccc Alignment from CESAR ctAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCATGAAGTA---------------ACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG ggtgctgtcttagtagcaaggcacatgcggtccttttgtgttcctcatagctAAAGTTCAGGAAGAGAGTGACAACTTGATTGGAAGACACAGGAGCCCTTGTATGCAAGACAGGAACCAT---------ACAACTGTAATGGTACAA---ATTCAACAGTATGTTGACCTTGGCCTAATTAGTTTGGTACATGAAGTCTCATGTGATGAAGTCACCTGTGACATAAAGCTTGGCAACTACTTCATCCCTAAAgtcaggtttacttcccagtatcccgtctacatgcccttcataggataccc Alignment from Spaln_aa2Genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCATGAAGTA---------------ACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG ggtgctgtcttagtagcaaggcacatgcggtccttttgtgttcctcatagCTAAAGTTCAGGAAGAGAGTGACAACTTGATTGGAAGACACAGGAGCCCTTGTATGCAAGACAGGAACCAT---------ACAACTGTAATGGTACAA---ATTCAACAGTATGTTGACCTTGGCCTAATTAGTTTGGTACATGAAGTCTCATGTGATGAAGTCACCTGTGACATAAAGCTTGGCAACTACTTCATCCCTAAAgtcaggtttacttcccagtatcccgtctacatgcccttcataggataccc Alignment from Spaln_nt2Genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCATGAAGTA---------------ACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG ggtgctgtcttagtagcaaggcacatgcggtccttttgtgttcctcatagCTAAAGTTCAGGAAGAGAGTGACAACTTGATTGGAAGACACAGGAGCCCTTGTATGCAAGACAGGAACCAT---------ACAACTGTAATGGTAC---AAATTCAACAGTATGTTGACCTTGGCCTAATTAGTTTGGTACATGAAGTCTCATGTGATGAAGTCACCTGTGACATAAAGCTTGGCAACTACTTCATCCCTAAAgtcaggtttacttcccagtatcccgtctacatgcccttcataggataccc Alignment from Pairagon CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGC---------------ATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG ggtgctgtcttagtagcaaggcacatgcggtccttttgtgttcctcatagCTAAAGTTCAGGAAGAGAGTGACAACTTGATTGGAAGACACAGGAGCCCTTGTATGCAAGACAGGAACCAT---------ACAACTGTAATGGTAC---AAATTCAACAGTATGTTGACCTTGGCCTAATTAGTTTGGTACATGAAGTCTCATGTGATGAAGTCACCTGTGACATAAAGCTTGGCAACTACTTCATCCCTAAAgtcaggtttacttcccagtatcccgtctacatgcccttcataggataccc Alignment from Exonerate_protein2genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCAT---------------GAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG ggtgctgtcttagtagcaaggcacatgcggtccttttgtgttcctcatagCTAAAGTTCAGGAAGAGAGTGACAACTTGATTGGAAGACACAGGAGCCCTTGTATGCAAGACAGGAACCAT---------ACAACTGTAATGGTA---CAAATTCAACAGTATGTTGACCTTGGCCTAATTAGTTTGGTACATGAAGTCTCATGTGATGAAGTCACCTGTGACATAAAGCTTGGCAACTACTTCATCCCTAAAgtcaggtttacttcccagtatcccgtctacatgcccttcataggataccc Alignment from Exonerate_coding2genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCAT---------------GAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG ggtgctgtcttagtagcaaggcacatgcggtccttttgtgttcctcatagCTAAAGTTCAGGAAGAGAGTGACAACTTGATTGGAAGACACAGGAGCCCTTGTATGCAAGACAGGAACCAT---------ACAACTGTAATGGTA---CAAATTCAACAGTATGTTGACCTTGGCCTAATTAGTTTGGTACATGAAGTCTCATGTGATGAAGTCACCTGTGACATAAAGCTTGGCAACTACTTCATCCCTAAAgtcaggtttacttcccagtatcccgtctacatgcccttcataggataccc Alignment from GeneWise CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATATGTTGACCTTGGCCCAATTAGTTTGGTGCATGAA---------------GTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG ggtgctgtcttagtagcaaggcacatgcggtccttttgtgttcctcatagCTAAAGTTCAGGAAGAGAGTGACAACTTGATTGGAAGACACAGGAGCCCTTGTATGCAAGACAGGAACCAT---------ACAACTGTAATGGTA---CAAATTCAACAGTATGTTGACCTTGGCCTAATTAGTTTGGTACATGAAGTCTCATGTGATGAAGTCACCTGTGACATAAAGCTTGGCAACTACTTCATCCCTAAAgtcaggtttacttcccagtatcccgtctacatgcccttcataggataccc #### Cyp2c67_ID7798_4 --> 2 - 0 Original Alignment gcTTACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTTGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG taatgcatgtgttctctttacaaaatttgtactttctcctctcctcacaggcCTACCCTGTGACCCACAATTTATAGTGGGATGTGCTGCATGCATCATCACTTGCTCTATTATTTTCCAGAACCGGTTTGATTATCAGGATGAGGATTTCCTTAGCCTTGTTGGAAAAGTGAATGAGTGCCCTGAAATCCTAGGAGCTCCAGGATGTCATgtatggtcaatcatgttaggtaagtccagagttcagaatcagggttctac Alignment from CESAR gcTTACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTTGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG taatgcatgtgttctctttacaaaatttgtactttctcctctcctcacaggcCTACCCTGTGACCCACAATTTATAGTGGGATGTGCTGCATGCATCATCACTTGCTCTATTATTTTCCAGAACCGGTTTGATTATCAGGATGAGGATTTCCTTAGCCTTGTTGGAAAAGTGAATGAGTGCCCTGAAATCCTAGGAGCTCCAGGATGTCATgtatggtcaatcatgttaggtaagtccagagttcagaatcagggttctac Alignment from Spaln_aa2Genome GCTTACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTTGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG taatgcatgtgttctctttacaaaatttgtactttctcctctcctcacagGCCTACCCTGTGACCCACAATTTATAGTGGGATGTGCTGCATGCATCATCACTTGCTCTATTATTTTCCAGAACCGGTTTGATTATCAGGATGAGGATTTCCTTAGCCTTGTTGGAAAAGTGAATGAGTGCCCTGAAATCCTAGGAGCTCCAGGATGTCATgtatggtcaatcatgttaggtaagtccagagttcagaatcagggttctac Alignment from Spaln_nt2Genome GCTTACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTTGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG taatgcatgtgttctctttacaaaatttgtactttctcctctcctcacagGCCTACCCTGTGACCCACAATTTATAGTGGGATGTGCTGCATGCATCATCACTTGCTCTATTATTTTCCAGAACCGGTTTGATTATCAGGATGAGGATTTCCTTAGCCTTGTTGGAAAAGTGAATGAGTGCCCTGAAATCCTAGGAGCTCCAGGATGTCATgtatggtcaatcatgttaggtaagtccagagttcagaatcagggttctac Alignment from Pairagon GCTTACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTTGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG taatgcatgtgttctctttacaaaatttgtactttctcctctcctcacagGCCTACCCTGTGACCCACAATTTATAGTGGGATGTGCTGCATGCATCATCACTTGCTCTATTATTTTCCAGAACCGGTTTGATTATCAGGATGAGGATTTCCTTAGCCTTGTTGGAAAAGTGAATGAGTGCCCTGAAATCCTAGGAGCTCCAGGATGTCATgtatggtcaatcatgttaggtaagtccagagttcagaatcagggttctac Alignment from Exonerate_protein2genome GCTTACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTTGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG taatgcatgtgttctctttacaaaatttgtactttctcctctcctcacagGCCTACCCTGTGACCCACAATTTATAGTGGGATGTGCTGCATGCATCATCACTTGCTCTATTATTTTCCAGAACCGGTTTGATTATCAGGATGAGGATTTCCTTAGCCTTGTTGGAAAAGTGAATGAGTGCCCTGAAATCCTAGGAGCTCCAGGATGTCATgtatggtcaatcatgttaggtaagtccagagttcagaatcagggttctac Alignment from Exonerate_coding2genome GCTTACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTTGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG taatgcatgtgttctctttacaaaatttgtactttctcctctcctcacagGCCTACCCTGTGACCCACAATTTATAGTGGGATGTGCTGCATGCATCATCACTTGCTCTATTATTTTCCAGAACCGGTTTGATTATCAGGATGAGGATTTCCTTAGCCTTGTTGGAAAAGTGAATGAGTGCCCTGAAATCCTAGGAGCTCCAGGATGTCATgtatggtcaatcatgttaggtaagtccagagttcagaatcagggttctac Alignment from GeneWise GCTTACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTTGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG taatgcatgtgttctctttacaaaatttgtactttctcctctcctcacagGCCTACCCTGTGACCCACAATTTATAGTGGGATGTGCTGCATGCATCATCACTTGCTCTATTATTTTCCAGAACCGGTTTGATTATCAGGATGAGGATTTCCTTAGCCTTGTTGGAAAAGTGAATGAGTGCCCTGAAATCCTAGGAGCTCCAGGATGTCATgtatggtcaatcatgttaggtaagtccagagttcagaatcagggttctac #### Cyp2c69_ID7828_7 --> 2 - 0 Original Alignment ctAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAAACATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACCTTGGCCCAACTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG tgtgcatcagaccagctgcaacgcatgtaactactttgtttcattgttagccAAAGTCCAGGAAGAGAGTGAT---GGGATTGATCGACCACACAGCCGTTGCATGCAGGACAGAAAAGACATGCCATACACAAATGCCATGGTGCATGAGGTCCAACGGTATGCTGATGTTTGCCCAACTAGTTTGGTGTACGAGCTAACCTGCGAAACTAAGTTCAGGAACTACTTCATTGCTAAAgtacctctcagccctaagatttctgtgccttgggtggtcttattacagtg Alignment from CESAR ctAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAAACATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACCTTGGCCCAACTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG tgtgcatcagaccagctgcaacgcatgtaactactttgtttcattgttagccAAAGTCCAGGAAGAGAGTGATGGG---ATTGATCGACCACACAGCCGTTGCATGCAGGACAGAAAAGACATGCCATACACAAATGCCATGGTGCATGAGGTCCAACGGTATGCTGATGTTTGCCCAACTAGTTTGGTGTACGAGCTAACCTGCGAAACTAAGTTCAGGAACTACTTCATTGCTAAAgtacctctcagccctaagatttctgtgccttgggtggtcttattacagtg Alignment from Spaln_aa2Genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAAACATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACCTTGGCCCAACTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG tgtgcatcagaccagctgcaacgcatgtaactactttgtttcattgttagCCAAAGTCCAGGAAGAGAGTGATGGG---ATTGATCGACCACACAGCCGTTGCATGCAGGACAGAAAAGACATGCCATACACAAATGCCATGGTGCATGAGGTCCAACGGTATGCTGATGTTTGCCCAACTAGTTTGGTGTACGAGCTAACCTGCGAAACTAAGTTCAGGAACTACTTCATTGCTAAAgtacctctcagccctaagatttctgtgccttgggtggtcttattacagtg Alignment from Spaln_nt2Genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAAACATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACCTTGGCCCAACTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG tgtgcatcagaccagctgcaacgcatgtaactactttgtttcattgttagCCAAAGTCCAGGAAGAGAGTG---ATGGGATTGATCGACCACACAGCCGTTGCATGCAGGACAGAAAAGACATGCCATACACAAATGCCATGGTGCATGAGGTCCAACGGTATGCTGATGTTTGCCCAACTAGTTTGGTGTACGAGCTAACCTGCGAAACTAAGTTCAGGAACTACTTCATTGCTAAAgtacctctcagccctaagatttctgtgccttgggtggtcttattacagtg Alignment from Pairagon CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAAACATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACCTTGGCCCAACTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG tgtgcatcagaccagctgcaacgcatgtaactactttgtttcattgttagCCAAAGTCCAGGAAGAGAGTG---ATGGGATTGATCGACCACACAGCCGTTGCATGCAGGACAGAAAAGACATGCCATACACAAATGCCATGGTGCATGAGGTCCAACGGTATGCTGATGTTTGCCCAACTAGTTTGGTGTACGAGCTAACCTGCGAAACTAAGTTCAGGAACTACTTCATTGCTAAAgtacctctcagccctaagatttctgtgccttgggtggtcttattacagtg Alignment from Exonerate_protein2genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAAACATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACCTTGGCCCAACTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG tgtgcatcagaccagctgcaacgcatgtaactactttgtttcattgttagCCAAAGTCCAGGAAGAGAGTGATGGG---ATTGATCGACCACACAGCCGTTGCATGCAGGACAGAAAAGACATGCCATACACAAATGCCATGGTGCATGAGGTCCAACGGTATGCTGATGTTTGCCCAACTAGTTTGGTGTACGAGCTAACCTGCGAAACTAAGTTCAGGAACTACTTCATTGCTAAAgtacctctcagccctaagatttctgtgccttgggtggtcttattacagtg Alignment from Exonerate_coding2genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAAACATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACCTTGGCCCAACTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG tgtgcatcagaccagctgcaacgcatgtaactactttgtttcattgttagCCAAAGTCCAGGAAGAGAGTGATGGG---ATTGATCGACCACACAGCCGTTGCATGCAGGACAGAAAAGACATGCCATACACAAATGCCATGGTGCATGAGGTCCAACGGTATGCTGATGTTTGCCCAACTAGTTTGGTGTACGAGCTAACCTGCGAAACTAAGTTCAGGAACTACTTCATTGCTAAAgtacctctcagccctaagatttctgtgccttgggtggtcttattacagtg Alignment from GeneWise CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAAACATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACCTTGGCCCAACTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG tgtgcatcagaccagctgcaacgcatgtaactactttgtttcattgttagCCAAAGTCCAGGAAGAGAGTGATGGG---ATTGATCGACCACACAGCCGTTGCATGCAGGACAGAAAAGACATGCCATACACAAATGCCATGGTGCATGAGGTCCAACGGTATGCTGATGTTTGCCCAACTAGTTTGGTGTACGAGCTAACCTGCGAAACTAAGTTCAGGAACTACTTCATTGCTAAAgtacctctcagccctaagatttctgtgccttgggtggtcttattacagtg #### Cyp2c70_ID7873_7 --> 2 - 0 Original Alignment ctAAAATTCAGGAAGAAATTGCTCATGTGATTGGTAGACATCGGAGACCCACCATGCAGGACAGGAACCACATGCCGTACACTGATGCTGTGTTGCATGAGATTCAGAGATACATTGATTTTGTTCCCATTCCTTCACCTCGTAAGACAACGCAGGATGTGGAGTTCAGAGGATACCACATTCCCAAG gtggatatagtttatagttgctgtctcaagtcactggggcctctttccagtaAACATTCTGGATGAGATTGCACATGTGATTGGTACCCACCAGAGACCTACTATACAAGACAGGAACCACATGTCATACACTGACGCAGTG---CATGAGATTCAGCAGTATATTGATTCTACTCCTGTCCCCTCATCTCGGAAGACTACGCAAGATCTTGAGTTTAGAGGATACCCAGTTTTTAGAgtgggtaatggaccatcttgtctctgggataggtttattgaactttctaa Alignment from CESAR ctAAAATTCAGGAAGAAATTGCTCATGTGATTGGTAGACATCGGAGACCCACCATGCAGGACAGGAACCACATGCCGTACACTGATGCTGTGTTGCATGAGATTCAGAGATACATTGATTTTGTTCCCATTCCTTCACCTCGTAAGACAACGCAGGATGTGGAGTTCAGAGGATACCACATTCCCAAG gtggatatagtttatagttgctgtctcaagtcactggggcctctttccagtaAACATTCTGGATGAGATTGCACATGTGATTGGTACCCACCAGAGACCTACTATACAAGACAGGAACCACATGTCATACACTGACGCAGTG---CATGAGATTCAGCAGTATATTGATTCTACTCCTGTCCCCTCATCTCGGAAGACTACGCAAGATCTTGAGTTTAGAGGATACCCAGTTTTTAGAgtgggtaatggaccatcttgtctctgggataggtttattgaactttctaa Alignment from Spaln_aa2Genome CTAAAATTCAGGAAGAAATTGCTCATGTGATTGGTAGACATCGGAGACCCACCATGCAGGACAGGAACCACATGCCGTACACTGATGCTGTGTTGCATGAGATTCAGAGATACATTGATTTTGTTCCCATTCCTTCACCTCGTAAGACAACGCAGGATGTGGAGTTCAGAGGATACCACATTCCCAAG gtggatatagtttatagttgctgtctcaagtcactggggcctctttccagTAAACATTCTGGATGAGATTGCACATGTGATTGGTACCCACCAGAGACCTACTATACAAGACAGGAACCACATGTCATACACTGACGCAGTG---CATGAGATTCAGCAGTATATTGATTCTACTCCTGTCCCCTCATCTCGGAAGACTACGCAAGATCTTGAGTTTAGAGGATACCCAGTTTTTAGAgtgggtaatggaccatcttgtctctgggataggtttattgaactttctaa Alignment from Spaln_nt2Genome CTAAAATTCAGGAAGAAATTGCTCATGTGATTGGTAGACATCGGAGACCCACCATGCAGGACAGGAACCACATGCCGTACACTGATGCTGTGTTGCATGAGATTCAGAGATACATTGATTTTGTTCCCATTCCTTCACCTCGTAAGACAACGCAGGATGTGGAGTTCAGAGGATACCACATTCCCAAG gtggatatagtttatagttgctgtctcaagtcactggggcctctttccagTAAACATTCTGGATGAGATTGCACATGTGATTGGTACCCACCAGAGACCTACTATACAAGACAGGAACCACATGTCATACACTGACGCAG---TGCATGAGATTCAGCAGTATATTGATTCTACTCCTGTCCCCTCATCTCGGAAGACTACGCAAGATCTTGAGTTTAGAGGATACCCAGTTTTTAGAgtgggtaatggaccatcttgtctctgggataggtttattgaactttctaa Alignment from Pairagon CTAAAATTCAGGAAGAAATTGCTCATGTGATTGGTAGACATCGGAGACCCACCATGCAGGACAGGAACCACATGCCGTACACTGATGCTGTGTTGCATGAGATTCAGAGATACATTGATTTTGTTCCCATTCCTTCACCTCGTAAGACAACGCAGGATGTGGAGTTCAGAGGATACC----------- gtggatatagtttatagttgctgtctcaagtcactggggcctctttccagTAAACATTCTGGATGAGATTGCACATGTGATTGGTACCCACCAGAGACCTACTATACAAGACAGGAACCACATGTCATACACTGACGCAG---TGCATGAGATTCAGCAGTATATTGATTCTACTCCTGTCCCCTCATCTCGGAAGACTACGCAAGATCTTGAGTTTAGAGGATACCCAGTTTTTAGAgtgggtaatggaccatcttgtctctgggataggtttattgaactttctaa Alignment from Exonerate_protein2genome CTAAAATTCAGGAAGAAATTGCTCATGTGATTGGTAGACATCGGAGACCCACCATGCAGGACAGGAACCACATGCCGTACACTGATGCTGTGTTGCATGAGATTCAGAGATACATTGATTTTGTTCCCATTCCTTCACCTCGTAAGACAACGCAGGATGTGGAGTTCAGAGGATACCACATTCCCAAG gtggatatagtttatagttgctgtctcaagtcactggggcctctttccagTAAACATTCTGGATGAGATTGCACATGTGATTGGTACCCACCAGAGACCTACTATACAAGACAGGAACCACATGTCATACACTGACGCAGTG---CATGAGATTCAGCAGTATATTGATTCTACTCCTGTCCCCTCATCTCGGAAGACTACGCAAGATCTTGAGTTTAGAGGATACCCAGTTTTTAGAgtgggtaatggaccatcttgtctctgggataggtttattgaactttctaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTAAAATTCAGGAAGAAATTGCTCATGTGATTGGTAGACATCGGAGACCCACCATGCAGGACAGGAACCACATGCCGTACACTGATGCTGTGTTGCATGAGATTCAGAGATACATTGATTTTGTTCCCATTCCTTCACCTCGTAAGACAACGCAGGATGTGGAGTTCAGAGGATACCACATTCCCAAG gtggatatagtttatagttgctgtctcaagtcactggggcctctttccagTAAACATTCTGGATGAGATTGCACATGTGATTGGTACCCACCAGAGACCTACTATACAAGACAGGAACCACATGTCATACACTGACGCAGTG---CATGAGATTCAGCAGTATATTGATTCTACTCCTGTCCCCTCATCTCGGAAGACTACGCAAGATCTTGAGTTTAGAGGATACCCAGTTTTTAGAgtgggtaatggaccatcttgtctctgggataggtttattgaactttctaa #### Cyp2c70_ID7878_2 --> 0 - 1 Original Alignment CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAg tatggccctgtacatgttctggagaatatttttttcttttccctctgtagTTAGCAAAAATGTATGGCCCTGTATTTACTGTGTATGTTGACATGAAACCCACTGTGGTACAGCATGGGTACAAACCCATGAAAGAAGCTCTAATTGACCATGGGGATGAATTCCCTGATAAAACAGAATCAACACTAATTAGCAGGTCAAGTCAAGGCCTAggtatcccctcctgcctggggcattcagccaatgcacctgtccctgtcaca Alignment from CESAR CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAg tatggccctgtacatgttctggagaatatttttttcttttccctctgtagTTAGCAAAAATGTATGGCCCTGTATTTACTGTGTATGTTGACATGAAACCCACTGTGGTACAGCATGGGTACAAACCCATGAAAGAAGCTCTAATTGACCATGGGGATGAATTCCCTGATAAAACAGAATCAACACTAATTAGCAGGTCAAGTCAAGGCCTAggtatcccctcctgcctggggcattcagccaatgcacctgtccctgtcaca Alignment from Spaln_aa2Genome CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAG tatggccctgtacatgttctggagaatatttttttcttttccctctgtagTTAGCAAAAATGTATGGCCCTGTATTTACTGTGTATGTTGACATGAAACCCACTGTGGTACAGCATGGGTACAAACCCATGAAAGAAGCTCTAATTGACCATGGGGATGAATTCCCTGATAAAACAGAATCAACACTAATTAGCAGGTCAAGTCAAGGCCTAGgtatcccctcctgcctggggcattcagccaatgcacctgtccctgtcaca Alignment from Spaln_nt2Genome CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAG tatggccctgtacatgttctggagaatatttttttcttttccctctgtagTTAGCAAAAATGTATGGCCCTGTATTTACTGTGTATGTTGACATGAAACCCACTGTGGTACAGCATGGGTACAAACCCATGAAAGAAGCTCTAATTGACCATGGGGATGAATTCCCTGATAAAACAGAATCAACACTAATTAGCAGGTCAAGTCAAGGCCTAGgtatcccctcctgcctggggcattcagccaatgcacctgtccctgtcaca Alignment from Pairagon CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAG tatggccctgtacatgttctggagaatatttttttcttttccctctgtagTTAGCAAAAATGTATGGCCCTGTATTTACTGTGTATGTTGACATGAAACCCACTGTGGTACAGCATGGGTACAAACCCATGAAAGAAGCTCTAATTGACCATGGGGATGAATTCCCTGATAAAACAGAATCAACACTAATTAGCAGGTCAAGTCAAGGCCTAGgtatcccctcctgcctggggcattcagccaatgcacctgtccctgtcaca Alignment from Exonerate_protein2genome CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAG tatggccctgtacatgttctggagaatatttttttcttttccctctgtagTTAGCAAAAATGTATGGCCCTGTATTTACTGTGTATGTTGACATGAAACCCACTGTGGTACAGCATGGGTACAAACCCATGAAAGAAGCTCTAATTGACCATGGGGATGAATTCCCTGATAAAACAGAATCAACACTAATTAGCAGGTCAAGTCAAGGCCTAGgtatcccctcctgcctggggcattcagccaatgcacctgtccctgtcaca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAG tatggccctgtacatgttctggagaatatttttttcttttccctctgtagTTAGCAAAAATGTATGGCCCTGTATTTACTGTGTATGTTGACATGAAACCCACTGTGGTACAGCATGGGTACAAACCCATGAAAGAAGCTCTAATTGACCATGGGGATGAATTCCCTGATAAAACAGAATCAACACTAATTAGCAGGTCAAGTCAAGGCCTAGgtatcccctcctgcctggggcattcagccaatgcacctgtccctgtcaca #### D19Bwg1357e_ID5836_16 --> 2 - 2 Original Alignment gtTGTTTTGCAAAAACCCTTGTAGAGCGTGTTGGTATGAAGAACCTCAAGTCCTGGGCCAGCATCAACCGAGGTGCCATTATTCTTTCCag gctgttttagtaaaactcttgttgtatgctgatgctgcttctcccggcaggcTGTTTTGCAAAAACCCTTGTAGAGCGGGTTGGTATGAAAAACCTCAAGTCCTGGGCTAGCCTCAACCAAGGTGCCATCATTCTCTCCaggtaagctgcttgggtcctgttacacactatggcacctaactccatttcat Alignment from CESAR gtTGTTTTGCAAAAACCCTTGTAGAGCGTGTTGGTATGAAGAACCTCAAGTCCTGGGCCAGCATCAACCGAGGTGCCATTATTCTTTCCag gctgttttagtaaaactcttgttgtatgctgatgctgcttctcccggcaggcTGTTTTGCAAAAACCCTTGTAGAGCGGGTTGGTATGAAAAACCTCAAGTCCTGGGCTAGCCTCAACCAAGGTGCCATCATTCTCTCCaggtaagctgcttgggtcctgttacacactatggcacctaactccatttcat Alignment from Spaln_aa2Genome GTTGTTTTGCAAAAACCCTTGTAGAGCGTGTTGGTATGAAGAACCTCAAGTCCTGGGCCAGCATCAACCGAGGTGCCATTATTCTTTCCAG gctgttttagtaaaactcttgttgtatgctgatgctgcttctcccggcagGCTGTTTTGCAAAAACCCTTGTAGAGCGGGTTGGTATGAAAAACCTCAAGTCCTGGGCTAGCCTCAACCAAGGTGCCATCATTCTCTCCAGgtaagctgcttgggtcctgttacacactatggcacctaactccatttcat Alignment from Spaln_nt2Genome GTTGTTTTGCAAAAACCCTTGTAGAGCGTGTTGGTATGAAGAACCTCAAGTCCTGGGCCAGCATCAACCGAGGTGCCATTATTCTTTCCAG gctgttttagtaaaactcttgttgtatgctgatgctgcttctcccggcagGCTGTTTTGCAAAAACCCTTGTAGAGCGGGTTGGTATGAAAAACCTCAAGTCCTGGGCTAGCCTCAACCAAGGTGCCATCATTCTCTCCAGgtaagctgcttgggtcctgttacacactatggcacctaactccatttcat Alignment from Pairagon GTTGTTTTGCAAAAACCCTTGTAGAGCGTGTTGGTATGAAGAACCTCAAGTCCTGGGCCAGCATCAACCGAGGTGCCATTATTCTTTCCAG gctgttttagtaaaactcttgttgtatgctgatgctgcttctcccggcagGCTGTTTTGCAAAAACCCTTGTAGAGCGGGTTGGTATGAAAAACCTCAAGTCCTGGGCTAGCCTCAACCAAGGTGCCATCATTCTCTCCAGgtaagctgcttgggtcctgttacacactatggcacctaactccatttcat Alignment from Exonerate_protein2genome GTTGTTTTGCAAAAACCCTTGTAGAGCGTGTTGGTATGAAGAACCTCAAGTCCTGGGCCAGCATCAACCGAGGTGCCATTATTCTTTCCAG gctgttttagtaaaactcttgttgtatgctgatgctgcttctcccggcagGCTGTTTTGCAAAAACCCTTGTAGAGCGGGTTGGTATGAAAAACCTCAAGTCCTGGGCTAGCCTCAACCAAGGTGCCATCATTCTCTCCAGgtaagctgcttgggtcctgttacacactatggcacctaactccatttcat Alignment from Exonerate_coding2genome GTTGTTTTGCAAAAACCCTTGTAGAGCGTGTTGGTATGAAGAACCTCAAGTCCTGGGCCAGCATCAACCGAGGTGCCATTATTCTTTCCAG gctgttttagtaaaactcttgttgtatgctgatgctgcttctcccggcagGCTGTTTTGCAAAAACCCTTGTAGAGCGGGTTGGTATGAAAAACCTCAAGTCCTGGGCTAGCCTCAACCAAGGTGCCATCATTCTCTCCAGgtaagctgcttgggtcctgttacacactatggcacctaactccatttcat Alignment from GeneWise GTTGTTTTGCAAAAACCCTTGTAGAGCGTGTTGGTATGAAGAACCTCAAGTCCTGGGCCAGCATCAACCGAGGTGCCATTATTCTTTCCAG gctgttttagtaaaactcttgttgtatgctgatgctgcttctcccggcagGCTGTTTTGCAAAAACCCTTGTAGAGCGGGTTGGTATGAAAAACCTCAAGTCCTGGGCTAGCCTCAACCAAGGTGCCATCATTCTCTCCAGgtaagctgcttgggtcctgttacacactatggcacctaactccatttcat #### D19Bwg1357e_ID5837_15 --> 0 - 1 Original Alignment CTTCATGTTGCTGAGCATCCTGCAGGACATCTGGTTCTCAAATGGTTACTAGAGCAAGATAAAAAGATGAAAGAAAGCGGAAAGGAAg tctcctggatcagaatgcaacttccaacattaaatgttttgttttatcagCTGCATGTTGCTGAGCACCCTGCAGGACATCTGGTTCTCAAGTGGCTACTAAAGCAAGATAAAAAGATGAAAGAATGTGGAAAAAAGggtaagtgctatttgcgcagaattggggtctagacttgggagactggttca Alignment from CESAR CTTCATGTTGCTGAGCATCCTGCAGGACATCTGGTTCTCAAATGGTTACTAGAGCAAGATAAAAAGATGAAAGAAAGCGGAAAGGAAg tctcctggatcagaatgcaacttccaacattaaatgttttgttttatcagCTGCATGTTGCTGAGCACCCTGCAGGACATCTGGTTCTCAAGTGGCTACTAAAGCAAGATAAAAAGATGAAAGAATGTGGAAAAAAGggtaagtgctatttgcgcagaattggggtctagacttgggagactggttca Alignment from Spaln_aa2Genome CTTCATGTTGCTGAGCATCCTGCAGGACATCTGGTTCTCAAATGGTTACTAGAGCAAGATAAAAAGATGAAAGAAAGCGGAAAGGAAG tctcctggatcagaatgcaacttccaacattaaatgttttgttttatcagCTGCATGTTGCTGAGCACCCTGCAGGACATCTGGTTCTCAAGTGGCTACTAAAGCAAGATAAAAAGATGAAAGAATGTGGAAAAAAGGgtaagtgctatttgcgcagaattggggtctagacttgggagactggttca Alignment from Spaln_nt2Genome CTTCATGTTGCTGAGCATCCTGCAGGACATCTGGTTCTCAAATGGTTACTAGAGCAAGATAAAAAGATGAAAGAAAGCGGAAAGGAAG tctcctggatcagaatgcaacttccaacattaaatgttttgttttatcagCTGCATGTTGCTGAGCACCCTGCAGGACATCTGGTTCTCAAGTGGCTACTAAAGCAAGATAAAAAGATGAAAGAATGTGGAAAAAAGGgtaagtgctatttgcgcagaattggggtctagacttgggagactggttca Alignment from Pairagon CTTCATGTTGCTGAGCATCCTGCAGGACATCTGGTTCTCAAATGGTTACTAGAGCAAGATAAAAAGATGAAAGAAAGCGGAAAGGAAG tctcctggatcagaatgcaacttccaacattaaatgttttgttttatcagCTGCATGTTGCTGAGCACCCTGCAGGACATCTGGTTCTCAAGTGGCTACTAAAGCAAGATAAAAAGATGAAAGAATGTGGAAAAAAGGgtaagtgctatttgcgcagaattggggtctagacttgggagactggttca Alignment from Exonerate_protein2genome CTTCATGTTGCTGAGCATCCTGCAGGACATCTGGTTCTCAAATGGTTACTAGAGCAAGATAAAAAGATGAAAGAAAGCGGAAAGGAAG tctcctggatcagaatgcaacttccaacattaaatgttttgttttatcagCTGCATGTTGCTGAGCACCCTGCAGGACATCTGGTTCTCAAGTGGCTACTAAAGCAAGATAAAAAGATGAAAGAATGTGGAAAAAAGGgtaagtgctatttgcgcagaattggggtctagacttgggagactggttca Alignment from Exonerate_coding2genome CTTCATGTTGCTGAGCATCCTGCAGGACATCTGGTTCTCAAATGGTTACTAGAGCAAGATAAAAAGATGAAAGAAAGCGGAAAGGAAG tctcctggatcagaatgcaacttccaacattaaatgttttgttttatcagCTGCATGTTGCTGAGCACCCTGCAGGACATCTGGTTCTCAAGTGGCTACTAAAGCAAGATAAAAAGATGAAAGAATGTGGAAAAAAGGgtaagtgctatttgcgcagaattggggtctagacttgggagactggttca Alignment from GeneWise CTTCATGTTGCTGAGCATCCTGCAGGACATCTGGTTCTCAAATGGTTACTAGAGCAAGATAAAAAGATGAAAGAAAGCGGAAAGGAAG tctcctggatcagaatgcaacttccaacattaaatgttttgttttatcagCTGCATGTTGCTGAGCACCCTGCAGGACATCTGGTTCTCAAGTGGCTACTAAAGCAAGATAAAAAGATGAAAGAATGTGGAAAAAAGGgtaagtgctatttgcgcagaattggggtctagacttgggagactggttca #### D19Bwg1357e_ID5839_13 --> 0 - 2 Original Alignment GAAATCATCAGTTCCTTGCCCAGCATAGTTAATGACAAATACGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCCAGAGACCCCGCCCACACGGTGCCCGAGCTCATCGAGCTTCTGCAGAAGGGTGATGGCAACGCGCACag aaagccaaaaagtccagacatgttctttctaccgtccctgtctccgctagGAAATCATTAGCTCCTTGCCCAGCATAGTTAACGACAAATATGGAAGGAAAGTCCTCTTGTATTTGATGAGCCCTAGAGACCCTGCCCACATGGTGCCTGAGCTCATTGAGCTTCTGCAGAAGGGTGATGGCAATGCGCACaggtgagggatggcttcaaatgcaggaaaccacctaatcatgcttcctttcc Alignment from CESAR GAAATCATCAGTTCCTTGCCCAGCATAGTTAATGACAAATACGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCCAGAGACCCCGCCCACACGGTGCCCGAGCTCATCGAGCTTCTGCAGAAGGGTGATGGCAACGCGCACag aaagccaaaaagtccagacatgttctttctaccgtccctgtctccgctagGAAATCATTAGCTCCTTGCCCAGCATAGTTAACGACAAATATGGAAGGAAAGTCCTCTTGTATTTGATGAGCCCTAGAGACCCTGCCCACATGGTGCCTGAGCTCATTGAGCTTCTGCAGAAGGGTGATGGCAATGCGCACaggtgagggatggcttcaaatgcaggaaaccacctaatcatgcttcctttcc Alignment from Spaln_aa2Genome GAAATCATCAGTTCCTTGCCCAGCATAGTTAATGACAAATACGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCCAGAGACCCCGCCCACACGGTGCCCGAGCTCATCGAGCTTCTGCAGAAGGGTGATGGCAACGCGCACAG aaagccaaaaagtccagacatgttctttctaccgtccctgtctccgctagGAAATCATTAGCTCCTTGCCCAGCATAGTTAACGACAAATATGGAAGGAAAGTCCTCTTGTATTTGATGAGCCCTAGAGACCCTGCCCACATGGTGCCTGAGCTCATTGAGCTTCTGCAGAAGGGTGATGGCAATGCGCACAGgtgagggatggcttcaaatgcaggaaaccacctaatcatgcttcctttcc Alignment from Spaln_nt2Genome GAAATCATCAGTTCCTTGCCCAGCATAGTTAATGACAAATACGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCCAGAGACCCCGCCCACACGGTGCCCGAGCTCATCGAGCTTCTGCAGAAGGGTGATGGCAACGCGCACAG aaagccaaaaagtccagacatgttctttctaccgtccctgtctccgctagGAAATCATTAGCTCCTTGCCCAGCATAGTTAACGACAAATATGGAAGGAAAGTCCTCTTGTATTTGATGAGCCCTAGAGACCCTGCCCACATGGTGCCTGAGCTCATTGAGCTTCTGCAGAAGGGTGATGGCAATGCGCACAGgtgagggatggcttcaaatgcaggaaaccacctaatcatgcttcctttcc Alignment from Pairagon GAAATCATCAGTTCCTTGCCCAGCATAGTTAATGACAAATACGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCCAGAGACCCCGCCCACACGGTGCCCGAGCTCATCGAGCTTCTGCAGAAGGGTGATGGCAACGCGCACAG aaagccaaaaagtccagacatgttctttctaccgtccctgtctccgctagGAAATCATTAGCTCCTTGCCCAGCATAGTTAACGACAAATATGGAAGGAAAGTCCTCTTGTATTTGATGAGCCCTAGAGACCCTGCCCACATGGTGCCTGAGCTCATTGAGCTTCTGCAGAAGGGTGATGGCAATGCGCACAGgtgagggatggcttcaaatgcaggaaaccacctaatcatgcttcctttcc Alignment from Exonerate_protein2genome GAAATCATCAGTTCCTTGCCCAGCATAGTTAATGACAAATACGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCCAGAGACCCCGCCCACACGGTGCCCGAGCTCATCGAGCTTCTGCAGAAGGGTGATGGCAACGCGCACAG aaagccaaaaagtccagacatgttctttctaccgtccctgtctccgctagGAAATCATTAGCTCCTTGCCCAGCATAGTTAACGACAAATATGGAAGGAAAGTCCTCTTGTATTTGATGAGCCCTAGAGACCCTGCCCACATGGTGCCTGAGCTCATTGAGCTTCTGCAGAAGGGTGATGGCAATGCGCACAGgtgagggatggcttcaaatgcaggaaaccacctaatcatgcttcctttcc Alignment from Exonerate_coding2genome GAAATCATCAGTTCCTTGCCCAGCATAGTTAATGACAAATACGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCCAGAGACCCCGCCCACACGGTGCCCGAGCTCATCGAGCTTCTGCAGAAGGGTGATGGCAACGCGCACAG aaagccaaaaagtccagacatgttctttctaccgtccctgtctccgctagGAAATCATTAGCTCCTTGCCCAGCATAGTTAACGACAAATATGGAAGGAAAGTCCTCTTGTATTTGATGAGCCCTAGAGACCCTGCCCACATGGTGCCTGAGCTCATTGAGCTTCTGCAGAAGGGTGATGGCAATGCGCACAGgtgagggatggcttcaaatgcaggaaaccacctaatcatgcttcctttcc Alignment from GeneWise GAAATCATCAGTTCCTTGCCCAGCATAGTTAATGACAAATACGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCCAGAGACCCCGCCCACACGGTGCCCGAGCTCATCGAGCTTCTGCAGAAGGGTGATGGCAACGCGCACAG aaagccaaaaagtccagacatgttctttctaccgtccctgtctccgctagGAAATCATTAGCTCCTTGCCCAGCATAGTTAACGACAAATATGGAAGGAAAGTCCTCTTGTATTTGATGAGCCCTAGAGACCCTGCCCACATGGTGCCTGAGCTCATTGAGCTTCTGCAGAAGGGTGATGGCAATGCGCACAGgtgagggatggcttcaaatgcaggaaaccacctaatcatgcttcctttcc #### D19Bwg1357e_ID5840_12 --> 0 - 0 Original Alignment GGCCAGTACTCTCACTTGGTTCTCCTGGCAGCGTTTGACTGTATTGATGATACTAAGCTTGTGAAGCAGATAATCATATCA tattactcccacaaagacgcatgataagtatcctctgcttaccttgacagGGCCAGTACTCCCACTTGGTTCTCCTAGCAGCATTTGACTGTATTGATGACACTAAGCTTGTAAAGCAGGTAATCATGTCTgtgggcactattctgggggcctgagattggtagacctgtacctatgttga Alignment from CESAR GGCCAGTACTCTCACTTGGTTCTCCTGGCAGCGTTTGACTGTATTGATGATACTAAGCTTGTGAAGCAGATAATCATATCA tattactcccacaaagacgcatgataagtatcctctgcttaccttgacagGGCCAGTACTCCCACTTGGTTCTCCTAGCAGCATTTGACTGTATTGATGACACTAAGCTTGTAAAGCAGGTAATCATGTCTgtgggcactattctgggggcctgagattggtagacctgtacctatgttga Alignment from Spaln_aa2Genome GGCCAGTACTCTCACTTGGTTCTCCTGGCAGCGTTTGACTGTATTGATGATACTAAGCTTGTGAAGCAGATAATCATATCA tattactcccacaaagacgcatgataagtatcctctgcttaccttgacagGGCCAGTACTCCCACTTGGTTCTCCTAGCAGCATTTGACTGTATTGATGACACTAAGCTTGTAAAGCAGGTAATCATGTCTgtgggcactattctgggggcctgagattggtagacctgtacctatgttga Alignment from Spaln_nt2Genome GGCCAGTACTCTCACTTGGTTCTCCTGGCAGCGTTTGACTGTATTGATGATACTAAGCTTGTGAAGCAGATAATCATATCA tattactcccacaaagacgcatgataagtatcctctgcttaccttgacagGGCCAGTACTCCCACTTGGTTCTCCTAGCAGCATTTGACTGTATTGATGACACTAAGCTTGTAAAGCAGGTAATCATGTCTgtgggcactattctgggggcctgagattggtagacctgtacctatgttga Alignment from Pairagon GGCCAGTACTCTCACTTGGTTCTCCTGGCAGCGTTTGACTGTATTGATGATACTAAGCTTGTGAAGCAGATAATCATATCA tattactcccacaaagacgcatgataagtatcctctgcttaccttgacagGGCCAGTACTCCCACTTGGTTCTCCTAGCAGCATTTGACTGTATTGATGACACTAAGCTTGTAAAGCAGGTAATCATGTCTgtgggcactattctgggggcctgagattggtagacctgtacctatgttga Alignment from Exonerate_protein2genome GGCCAGTACTCTCACTTGGTTCTCCTGGCAGCGTTTGACTGTATTGATGATACTAAGCTTGTGAAGCAGATAATCATATCA tattactcccacaaagacgcatgataagtatcctctgcttaccttgacagGGCCAGTACTCCCACTTGGTTCTCCTAGCAGCATTTGACTGTATTGATGACACTAAGCTTGTAAAGCAGGTAATCATGTCTgtgggcactattctgggggcctgagattggtagacctgtacctatgttga Alignment from Exonerate_coding2genome GGCCAGTACTCTCACTTGGTTCTCCTGGCAGCGTTTGACTGTATTGATGATACTAAGCTTGTGAAGCAGATAATCATATCA tattactcccacaaagacgcatgataagtatcctctgcttaccttgacagGGCCAGTACTCCCACTTGGTTCTCCTAGCAGCATTTGACTGTATTGATGACACTAAGCTTGTAAAGCAGGTAATCATGTCTgtgggcactattctgggggcctgagattggtagacctgtacctatgttga Alignment from GeneWise GGCCAGTACTCTCACTTGGTTCTCCTGGCAGCGTTTGACTGTATTGATGATACTAAGCTTGTGAAGCAGATAATCATATCA tattactcccacaaagacgcatgataagtatcctctgcttaccttgacagGGCCAGTACTCCCACTTGGTTCTCCTAGCAGCATTTGACTGTATTGATGACACTAAGCTTGTAAAGCAGGTAATCATGTCTgtgggcactattctgggggcctgagattggtagacctgtacctatgttga #### D19Bwg1357e_ID5845_7 --> 1 - 0 Original Alignment aAGTAAGCCACAAGTTGCGGAGATAATCAGAAGTTTTAAAGGTCATGTGAGGAAGATGCTGCGGCATTCGGAGGCATCGGCCATTGTGGAGTACGCATACAACGACAAAGCCATTTTGGAACAGAGGAACATGCTGACAGAGGAGCTCTATGGGAACACGTTTCAGCTTTACAAG agattctgtgttcctgacctttgattttactttccttttttaatctgtagaAGAAAGCCTCAAGTTGCTGAAATTATCAGAAGTTTCAAAGGTCATGTGAGGAAAATGCTACGGCATTCCAAGGCAGCAGCCATTGTAGAGTGC---GACAATGACAAAGCCATCCTGGAACAAAGGAACATGCTGACAGAAGAACTATATGGGAACATGTTTCAGCTATACAGGgtgagtctaaggataccatgcttcactggacgtttgaatgttagtaggtt Alignment from CESAR aAGTAAGCCACAAGTTGCGGAGATAATCAGAAGTTTTAAAGGTCATGTGAGGAAGATGCTGCGGCATTCGGAGGCATCGGCCATTGTGGAGTACGCATACAACGACAAAGCCATTTTGGAACAGAGGAACATGCTGACAGAGGAGCTCTATGGGAACACGTTTCAGCTTTACAAG agattctgtgttcctgacctttgattttactttccttttttaatctgtagaAGAAAGCCTCAAGTTGCTGAAATTATCAGAAGTTTCAAAGGTCATGTGAGGAAAATGCTACGGCATTCCAAGGCAGCAGCCATTGTAGAGTGCGAC---AATGACAAAGCCATCCTGGAACAAAGGAACATGCTGACAGAAGAACTATATGGGAACATGTTTCAGCTATACAGGgtgagtctaaggataccatgcttcactggacgtttgaatgttagtaggtt Alignment from Spaln_aa2Genome AAGTAAGCCACAAGTTGCGGAGATAATCAGAAGTTTTAAAGGTCATGTGAGGAAGATGCTGCGGCATTCGGAGGCATCGGCCATTGTGGAGTACGCATACAACGACAAAGCCATTTTGGAACAGAGGAACATGCTGACAGAGGAGCTCTATGGGAACACGTTTCAGCTTTACAAG agattctgtgttcctgacctttgattttactttccttttttaatctgtagAAGAAAGCCTCAAGTTGCTGAAATTATCAGAAGTTTCAAAGGTCATGTGAGGAAAATGCTACGGCATTCCAAGGCAGCAGCCATTGTAGAGTGCGAC---AATGACAAAGCCATCCTGGAACAAAGGAACATGCTGACAGAAGAACTATATGGGAACATGTTTCAGCTATACAGGgtgagtctaaggataccatgcttcactggacgtttgaatgttagtaggtt Alignment from Spaln_nt2Genome AAGTAAGCCACAAGTTGCGGAGATAATCAGAAGTTTTAAAGGTCATGTGAGGAAGATGCTGCGGCATTCGGAGGCATCGGCCATTGTGGAGTACGCATACAACGACAAAGCCATTTTGGAACAGAGGAACATGCTGACAGAGGAGCTCTATGGGAACACGTTTCAGCTTTACAAG agattctgtgttcctgacctttgattttactttccttttttaatctgtagAAGAAAGCCTCAAGTTGCTGAAATTATCAGAAGTTTCAAAGGTCATGTGAGGAAAATGCTACGGCATTCCAAGGCAGCAGCCATTGTAGAGTGCG---ACAATGACAAAGCCATCCTGGAACAAAGGAACATGCTGACAGAAGAACTATATGGGAACATGTTTCAGCTATACAGGgtgagtctaaggataccatgcttcactggacgtttgaatgttagtaggtt Alignment from Pairagon AAGTAAGCCACAAGTTGCGGAGATAATCAGAAGTTTTAAAGGTCATGTGAGGAAGATGCTGCGGCATTCGGAGGCATCGGCCATTGTGGAGTACGCATACAACGACAAAGCCATTTTGGAACAGAGGAACATGCTGACAGAGGAGCTCTATGGGAACACGTTTCAGCTTTACAAG agattctgtgttcctgacctttgattttactttccttttttaatctgtagAAGAAAGCCTCAAGTTGCTGAAATTATCAGAAGTTTCAAAGGTCATGTGAGGAAAATGCTACGGCATTCCAAGGCAGCAGCCATTGTAGAGTGCG---ACAATGACAAAGCCATCCTGGAACAAAGGAACATGCTGACAGAAGAACTATATGGGAACATGTTTCAGCTATACAGGgtgagtctaaggataccatgcttcactggacgtttgaatgttagtaggtt Alignment from Exonerate_protein2genome AAGTAAGCCACAAGTTGCGGAGATAATCAGAAGTTTTAAAGGTCATGTGAGGAAGATGCTGCGGCATTCGGAGGCATCGGCCATTGTGGAGTACGCATACAACGACAAAGCCATTTTGGAACAGAGGAACATGCTGACAGAGGAGCTCTATGGGAACACGTTTCAGCTTTACAAG agattctgtgttcctgacctttgattttactttccttttttaatctgtagAAGAAAGCCTCAAGTTGCTGAAATTATCAGAAGTTTCAAAGGTCATGTGAGGAAAATGCTACGGCATTCCAAGGCAGCAGCCATTGTAGAG---TGCGACAATGACAAAGCCATCCTGGAACAAAGGAACATGCTGACAGAAGAACTATATGGGAACATGTTTCAGCTATACAGGgtgagtctaaggataccatgcttcactggacgtttgaatgttagtaggtt Alignment from Exonerate_coding2genome AAGTAAGCCACAAGTTGCGGAGATAATCAGAAGTTTTAAAGGTCATGTGAGGAAGATGCTGCGGCATTCGGAGGCATCGGCCATTGTGGAGTACGCATACAACGACAAAGCCATTTTGGAACAGAGGAACATGCTGACAGAGGAGCTCTATGGGAACACGTTTCAGCTTTACAAG agattctgtgttcctgacctttgattttactttccttttttaatctgtagAAGAAAGCCTCAAGTTGCTGAAATTATCAGAAGTTTCAAAGGTCATGTGAGGAAAATGCTACGGCATTCCAAGGCAGCAGCCATTGTAGAG---TGCGACAATGACAAAGCCATCCTGGAACAAAGGAACATGCTGACAGAAGAACTATATGGGAACATGTTTCAGCTATACAGGgtgagtctaaggataccatgcttcactggacgtttgaatgttagtaggtt Alignment from GeneWise AAGTAAGCCACAAGTTGCGGAGATAATCAGAAGTTTTAAAGGTCATGTGAGGAAGATGCTGCGGCATTCGGAGGCATCGGCCATTGTGGAGTACGCATACAACGACAAAGCCATTTTGGAACAGAGGAACATGCTGACAGAGGAGCTCTATGGGAACACGTTTCAGCTTTACAAG agattctgtgttcctgacctttgattttactttccttttttaatctgtagAAGAAAGCCTCAAGTTGCTGAAATTATCAGAAGTTTCAAAGGTCATGTGAGGAAAATGCTACGGCATTCCAAGGCAGCAGCCATTGTAGAG---TGCGACAATGACAAAGCCATCCTGGAACAAAGGAACATGCTGACAGAAGAACTATATGGGAACATGTTTCAGCTATACAGGgtgagtctaaggataccatgcttcactggacgtttgaatgttagtaggtt #### D19Ertd737e_ID13191_3 --> 2 - 2 Original Alignment gcAAATTGAAGAATGAAAAGGAATCTCACag tttgcgacacagaagtctatatgtcagttcaacccaccttgctcttacaggcAAGTTGAAAAATGAGAGAGAATCTCACaggtctgtatataatatgtgtcctaactaaccttttagcatggccagacgag Alignment from CESAR gcAAATTGAAGAATGAAAAGGAATCTCACag tttgcgacacagaagtctatatgtcagttcaacccaccttgctcttacaggcAAGTTGAAAAATGAGAGAGAATCTCACaggtctgtatataatatgtgtcctaactaaccttttagcatggccagacgag Alignment from Spaln_aa2Genome GCAAATTGAAGAATGAAAAGGAATCTCACAG tttgcgacacagaagtctatatgtcagttcaacccaccttgctcttacagGCAAGTTGAAAAATGAGAGAGAATCTCACAGgtctgtatataatatgtgtcctaactaaccttttagcatggccagacgag Alignment from Spaln_nt2Genome GCAAATTGAAGAATGAAAAGGAATCTCACAG tttgcgacacagaagtctatatgtcagttcaacccaccttgctcttacagGCAAGTTGAAAAATGAGAGAGAATCTCACAGgtctgtatataatatgtgtcctaactaaccttttagcatggccagacgag Alignment from Pairagon GCAAATTGAAGAATGAAAAGGAATCTCACAG tttgcgacacagaagtctatatgtcagttcaacccaccttgctcttacagGCAAGTTGAAAAATGAGAGAGAATCTCACAGgtctgtatataatatgtgtcctaactaaccttttagcatggccagacgag Alignment from Exonerate_protein2genome GCAAATTGAAGAATGAAAAGGAATCTCACAG tttgcgacacagaagtctatatgtcagttcaacccaccttgctcttacagGCAAGTTGAAAAATGAGAGAGAATCTCACAGgtctgtatataatatgtgtcctaactaaccttttagcatggccagacgag Alignment from Exonerate_coding2genome tttgcgacacagaagtctatatgtcagttcaacccaccttgctcttacaggcaagttgaaaaatgagagagaatctcacaggtctgtatataatatgtgtcctaactaaccttttagcatggccagacgag Alignment from GeneWise tttgcgacacagaagtctatatgtcagttcaacccaccttgctcttacaggcaagttgaaaaatgagagagaatctcacaggtctgtatataatatgtgtcctaactaaccttttagcatggccagacgag #### Dagla_ID2755_15 --> 1 - 0 Original Alignment gATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA ggacagagatgttggtaaagaaggaaacaaatgttttgatgattctccaggGTTGGCCTTTCCCAACTAGAAGGATTTTGCAGGCAGCTTTTAGATGTCTTGCAACGGAGTACTAAACCCAAGgtaaatactggtcagagctacagaaccaaaaaacgcctgtctatatgtgg Alignment from CESAR gATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA ggacagagatgttggtaaagaaggaaacaaatgttttgatgattctccaggGTTGGCCTTTCCCAACTAGAAGGATTTTGCAGGCAGCTTTTAGATGTCTTGCAACGGAGTACTAAACCCAAGgtaaatactggtcagagctacagaaccaaaaaacgcctgtctatatgtgg Alignment from Spaln_aa2Genome GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA ggacagagatgttggtaaagaaggaaacaaatgttttgatgattctccagGGTTGGCCTTTCCCAACTAGAAGGATTTTGCAGGCAGCTTTTAGATGTCTTGCAACGGAGTACTAAACCCAAGgtaaatactggtcagagctacagaaccaaaaaacgcctgtctatatgtgg Alignment from Spaln_nt2Genome GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA ggacagagatgttggtaaagaaggaaacaaatgttttgatgattctccagGGTTGGCCTTTCCCAACTAGAAGGATTTTGCAGGCAGCTTTTAGATGTCTTGCAACGGAGTACTAAACCCAAGgtaaatactggtcagagctacagaaccaaaaaacgcctgtctatatgtgg Alignment from Pairagon GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA ggacagagatgttggtaaagaaggaaacaaatgttttgatgattctccagGGTTGGCCTTTCCCAACTAGAAGGATTTTGCAGGCAGCTTTTAGATGTCTTGCAACGGAGTACTAAACCCAAGgtaaatactggtcagagctacagaaccaaaaaacgcctgtctatatgtgg Alignment from Exonerate_protein2genome GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA ggacagagatgttggtaaagaaggaaacaaatgttttgatgattctccagGGTTGGCCTTTCCCAACTAGAAGGATTTTGCAGGCAGCTTTTAGATGTCTTGCAACGGAGTACTAAACCCAAGgtaaatactggtcagagctacagaaccaaaaaacgcctgtctatatgtgg Alignment from Exonerate_coding2genome GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA ggacagagatgttggtaaagaaggaaacaaatgttttgatgattctccagGGTTGGCCTTTCCCAACTAGAAGGATTTTGCAGGCAGCTTTTAGATGTCTTGCAACGGAGTACTAAACCCAAGgtaaatactggtcagagctacagaaccaaaaaacgcctgtctatatgtgg Alignment from GeneWise GATTGGCCTTTCCCAGCTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA ggacagagatgttggtaaagaaggaaacaaatgttttgatgattctccagGGTTGGCCTTTCCCAACTAGAAGGATTTTGCAGGCAGCTTTTAGATGTCTTGCAACGGAGTACTAAACCCAAGgtaaatactggtcagagctacagaaccaaaaaacgcctgtctatatgtgg #### Dagla_ID2758_12 --> 0 - 0 Original Alignment GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacagttgctctgatgctgaacgtctattctctaccctctgtgacccagGACATGGTCCTAGCAGCTGAGTACATTAAGAAGAAGCTGGAACAGGAGATGGTCTTGTCCCAGGCTTTTGGGCGGGACCTGgtaagttttgatttggactattctcaaacctgcactaatattggtgcact Alignment from CESAR GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacagttgctctgatgctgaacgtctattctctaccctctgtgacccagGACATGGTCCTAGCAGCTGAGTACATTAAGAAGAAGCTGGAACAGGAGATGGTCTTGTCCCAGGCTTTTGGGCGGGACCTGgtaagttttgatttggactattctcaaacctgcactaatattggtgcact Alignment from Spaln_aa2Genome tcacagttgctctgatgctgaacgtctattctctaccctctgtgacccaggacatggtcctagcagctgagtacattaagaagaagctggaacaggagatggtcttgtcccaggcttttgggcgggacctggtaagttttgatttggactattctcaaacctgcactaatattggtgcact Alignment from Spaln_nt2Genome GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacagttgctctgatgctgaacgtctattctctaccctctgtgacccagGACATGGTCCTAGCAGCTGAGTACATTAAGAAGAAGCTGGAACAGGAGATGGTCTTGTCCCAGGCTTTTGGGCGGGACCTGgtaagttttgatttggactattctcaaacctgcactaatattggtgcact Alignment from Pairagon GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacagttgctctgatgctgaacgtctattctctaccctctgtgacccagGACATGGTCCTAGCAGCTGAGTACATTAAGAAGAAGCTGGAACAGGAGATGGTCTTGTCCCAGGCTTTTGGGCGGGACCTGgtaagttttgatttggactattctcaaacctgcactaatattggtgcact Alignment from Exonerate_protein2genome GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacagttgctctgatgctgaacgtctattctctaccctctgtgacccagGACATGGTCCTAGCAGCTGAGTACATTAAGAAGAAGCTGGAACAGGAGATGGTCTTGTCCCAGGCTTTTGGGCGGGACCTGgtaagttttgatttggactattctcaaacctgcactaatattggtgcact Alignment from Exonerate_coding2genome AAGGGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacagttgctctgatgctgaacgtctattctctaccctctgtgaccCAGGACATGGTCCTAGCAGCTGAGTACATTAAGAAGAAGCTGGAACAGGAGATGGTCTTGTCCCAGGCTTTTGGGCGGGACCTGgtaagttttgatttggactattctcaaacctgcactaatattggtgcact Alignment from GeneWise GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG tcacagttgctctgatgctgaacgtctattctctaccctctgtgacccagGACATGGTCCTAGCAGCTGAGTACATTAAGAAGAAGCTGGAACAGGAGATGGTCTTGTCCCAGGCTTTTGGGCGGGACCTGgtaagttttgatttggactattctcaaacctgcactaatattggtgcact #### Dagla_ID2759_11 --> 0 - 0 Original Alignment GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG ttacacttcacttttgttacactaccacttatctctctcctactacacagGATGCCTTAACTGATTTAACAGGTGATGCAGAGCACCTTCCTGCAGAGACACACAGAGTTGCCTGGTTGGGGCATAAAgtgagcggttaactgatgttccagtgtctcacagttgctctgatgctgaa Alignment from CESAR GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG ttacacttcacttttgttacactaccacttatctctctcctactacacagGATGCCTTAACTGATTTAACAGGTGATGCAGAGCACCTTCCTGCAGAGACACACAGAGTTGCCTGGTTGGGGCATAAAgtgagcggttaactgatgttccagtgtctcacagttgctctgatgctgaa Alignment from Spaln_aa2Genome GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG ttacacttcacttttgttacactaccacttatctctctcctactacacagGATGCCTTAACTGATTTAACAGGTGATGCAGAGCACCTTCCTGCAGAGACACACAGAGTTGCCTGGTTGGGGCATAAAgtgagcggttaactgatgttccagtgtctcacagttgctctgatgctgaa Alignment from Spaln_nt2Genome GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG ttacacttcacttttgttacactaccacttatctctctcctactacacagGATGCCTTAACTGATTTAACAGGTGATGCAGAGCACCTTCCTGCAGAGACACACAGAGTTGCCTGGTTGGGGCATAAAgtgagcggttaactgatgttccagtgtctcacagttgctctgatgctgaa Alignment from Pairagon GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG ttacacttcacttttgttacactaccacttatctctctcctactacacagGATGCCTTAACTGATTTAACAGGTGATGCAGAGCACCTTCCTGCAGAGACACACAGAGTTGCCTGGTTGGGGCATAAAgtgagcggttaactgatgttccagtgtctcacagttgctctgatgctgaa Alignment from Exonerate_protein2genome GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG ttacacttcacttttgttacactaccacttatctctctcctactacacagGATGCCTTAACTGATTTAACAGGTGATGCAGAGCACCTTCCTGCAGAGACACACAGAGTTGCCTGGTTGGGGCATAAAgtgagcggttaactgatgttccagtgtctcacagttgctctgatgctgaa Alignment from Exonerate_coding2genome ttacacttcacttttgttacactaccacttatctctctcctactacacaggatgccttaactgatttaacaggtgatgcagagcaccttcctgcagagacacacagagttgcctggttggggcataaagtgagcggttaactgatgttccagtgtctcacagttgctctgatgctgaa Alignment from GeneWise --------------------------------------------------GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG TTACACTTCACTTTTGTTACACTACCACTTATCTCTCTCCTACTACACAGGATGCCTTAACTGATTTAACAGGTGATGCAGAGCACCTTCCTGCAGAGACACACAGAGTTGCCTGGTTGGGGCATAAAgtgagcggttaactgatgttccagtgtctcacagttgctctgatgctgaa #### Dagla_ID2760_10 --> 0 - 0 Original Alignment GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG tcgcttatcagctttccaaaattccttcgttttaatgtcattttctgtagGTCTATGAAACTCCCTTTTATGTTGCTGTTGACCATGATAAGAAGAAAGTAGTGGTCAGCATCAGGGGGACTTTATCCCCGAAAgtgctagccattgtattcaaatttacacttcacttttgttacactaccac Alignment from CESAR GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG tcgcttatcagctttccaaaattccttcgttttaatgtcattttctgtagGTCTATGAAACTCCCTTTTATGTTGCTGTTGACCATGATAAGAAGAAAGTAGTGGTCAGCATCAGGGGGACTTTATCCCCGAAAgtgctagccattgtattcaaatttacacttcacttttgttacactaccac Alignment from Spaln_aa2Genome GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG tcgcttatcagctttccaaaattccttcgttttaatgtcattttctgtagGTCTATGAAACTCCCTTTTATGTTGCTGTTGACCATGATAAGAAGAAAGTAGTGGTCAGCATCAGGGGGACTTTATCCCCGAAAgtgctagccattgtattcaaatttacacttcacttttgttacactaccac Alignment from Spaln_nt2Genome GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG tcgcttatcagctttccaaaattccttcgttttaatgtcattttctgtagGTCTATGAAACTCCCTTTTATGTTGCTGTTGACCATGATAAGAAGAAAGTAGTGGTCAGCATCAGGGGGACTTTATCCCCGAAAgtgctagccattgtattcaaatttacacttcacttttgttacactaccac Alignment from Pairagon GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCC------------------------------------------------------ tcgcttatcagctttccaaaattccttcgttttaatgtcattttctgtagGTCTATGAAACTCCCTTTTATGTTGCTGTTGACCATGATAAGAAGAAAGTAGTGGTCAGCATCAGGGGGACTTTATCCCCGAAAGTGCTAGCCATTGTATTCAAATTTACACTTCACTTTTGTTACACTACCAC Alignment from Exonerate_protein2genome GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG tcgcttatcagctttccaaaattccttcgttttaatgtcattttctgtagGTCTATGAAACTCCCTTTTATGTTGCTGTTGACCATGATAAGAAGAAAGTAGTGGTCAGCATCAGGGGGACTTTATCCCCGAAAgtgctagccattgtattcaaatttacacttcacttttgttacactaccac Alignment from Exonerate_coding2genome tcgcttatcagctttccaaaattccttcgttttaatgtcattttctgtaggtctatgaaactcccttttatgttgctgttgaccatgataagaagaaagtagtggtcagcatcagggggactttatccccgaaagtgctagccattgtattcaaatttacacttcacttttgttacactaccac Alignment from GeneWise GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG-------------------------------------------------- tcgcttatcagctttccaaaattccttcgttttaatgtcattttctgtagGTCTATGAAACTCCCTTTTATGTTGCTGTTGACCATGATAAGAAGAAAGTAGTGGTCAGCATCAGGGGGACTTTATCCCCGAAAGTGCTAGCCATTGTATTCAAATTTACACTTCACTTTTGTTACACTACCAC #### Dagla_ID2762_8 --> 0 - 2 Original Alignment CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCtc tgaccagatggatgttaaaagctcctgatctcatagctgacctgtcacagCCTGAGATGTTACACTACAAAGAGGTTTGCTATTATATGCTCTTAGCTCTAGCTGCCTGTGGGTGGCCTATGTACTTGATGAGGAAGCCCACCTGTGGCCTTTGTCAATTTGCCCGGTCATGCgcgtgagctcctgttggtttctcattgaaaattaactgtggtgcttgaactg Alignment from CESAR CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCtc tgaccagatggatgttaaaagctcctgatctcatagctgacctgtcacagCCTGAGATGTTACACTACAAAGAGGTTTGCTATTATATGCTCTTAGCTCTAGCTGCCTGTGGGTGGCCTATGTACTTGATGAGGAAGCCCACCTGTGGCCTTTGTCAATTTGCCCGGTCATGCgcgtgagctcctgttggtttctcattgaaaattaactgtggtgcttgaactg Alignment from Spaln_aa2Genome CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCTC tgaccagatggatgttaaaagctcctgatctcatagctgacctgtcacagCCTGAGATGTTACACTACAAAGAGGTTTGCTATTATATGCTCTTAGCTCTAGCTGCCTGTGGGTGGCCTATGTACTTGATGAGGAAGCCCACCTGTGGCCTTTGTCAATTTGCCCGGTCATGCGCgtgagctcctgttggtttctcattgaaaattaactgtggtgcttgaactg Alignment from Spaln_nt2Genome CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCTC tgaccagatggatgttaaaagctcctgatctcatagctgacctgtcacagCCTGAGATGTTACACTACAAAGAGGTTTGCTATTATATGCTCTTAGCTCTAGCTGCCTGTGGGTGGCCTATGTACTTGATGAGGAAGCCCACCTGTGGCCTTTGTCAATTTGCCCGGTCATGCGCgtgagctcctgttggtttctcattgaaaattaactgtggtgcttgaactg Alignment from Pairagon CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCTC tgaccagatggatgttaaaagctcctgatctcatagctgacctgtcacagCCTGAGATGTTACACTACAAAGAGGTTTGCTATTATATGCTCTTAGCTCTAGCTGCCTGTGGGTGGCCTATGTACTTGATGAGGAAGCCCACCTGTGGCCTTTGTCAATTTGCCCGGTCATGCGCgtgagctcctgttggtttctcattgaaaattaactgtggtgcttgaactg Alignment from Exonerate_protein2genome CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCTC tgaccagatggatgttaaaagctcctgatctcatagctgacctgtcacagCCTGAGATGTTACACTACAAAGAGGTTTGCTATTATATGCTCTTAGCTCTAGCTGCCTGTGGGTGGCCTATGTACTTGATGAGGAAGCCCACCTGTGGCCTTTGTCAATTTGCCCGGTCATGCGCgtgagctcctgttggtttctcattgaaaattaactgtggtgcttgaactg Alignment from Exonerate_coding2genome tgaccagatggatgttaaaagctcctgatctcatagctgacctgtcacagcctgagatgttacactacaaagaggtttgctattatatgctcttagctctagctgcctgtgggtggcctatgtacttgatgaggaagcccacctgtggcctttgtcaatttgcccggtcatgcgcgtgagctcctgttggtttctcattgaaaattaactgtggtgcttgaactg Alignment from GeneWise CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCTC tgaccagatggatgttaaaagctcctgatctcatagctgacctgtcacagCCTGAGATGTTACACTACAAAGAGGTTTGCTATTATATGCTCTTAGCTCTAGCTGCCTGTGGGTGGCCTATGTACTTGATGAGGAAGCCCACCTGTGGCCTTTGTCAATTTGCCCGGTCATGCGCgtgagctcctgttggtttctcattgaaaattaactgtggtgcttgaactg #### Dagla_ID2766_5 --> 1 - 0 Original Alignment gCACCGGTTAGAGGAGGGTCAGGCCACCAGCTGGTCCCGCCGTCTAAAAGTGTTCCTCTGTTGCACCCGGACAAAGGATTCCCAGTCA actcggttcctgttccacaatcttggcgtcataatttttctctatttcagaCACCAACTAGAAGAGGGTCAGGCTACCAGCTGGTCTTGCCGGCTGAAAATCTTCTTCTGTTGCAGCTGTACAAAAGACCCTCAAGCAgtgagtccctgactttgataccttgaatgtattcccaggaggtaaggggg Alignment from CESAR gCACCGGTTAGAGGAGGGTCAGGCCACCAGCTGGTCCCGCCGTCTAAAAGTGTTCCTCTGTTGCACCCGGACAAAGGATTCCCAGTCA actcggttcctgttccacaatcttggcgtcataatttttctctatttcagaCACCAACTAGAAGAGGGTCAGGCTACCAGCTGGTCTTGCCGGCTGAAAATCTTCTTCTGTTGCAGCTGTACAAAAGACCCTCAAGCAgtgagtccctgactttgataccttgaatgtattcccaggaggtaaggggg Alignment from Spaln_aa2Genome GCACCGGTTAGAGGAGGGTCAGGCCACCAGCTGGTCCCGCCGTCTAAAAGTGTTCCTCTGTTGCACCCGGACAAAGGATTCCCAGTCA actcggttcctgttccacaatcttggcgtcataatttttctctatttcagACACCAACTAGAAGAGGGTCAGGCTACCAGCTGGTCTTGCCGGCTGAAAATCTTCTTCTGTTGCAGCTGTACAAAAGACCCTCAAGCAgtgagtccctgactttgataccttgaatgtattcccaggaggtaaggggg Alignment from Spaln_nt2Genome GCACCGGTTAGAGGAGGGTCAGGCCACCAGCTGGTCCCGCCGTCTAAAAGTGTTCCTCTGTTGCACCCGGACAAAGGATTCCCAGTCA actcggttcctgttccacaatcttggcgtcataatttttctctatttcagACACCAACTAGAAGAGGGTCAGGCTACCAGCTGGTCTTGCCGGCTGAAAATCTTCTTCTGTTGCAGCTGTACAAAAGACCCTCAAGCAgtgagtccctgactttgataccttgaatgtattcccaggaggtaaggggg Alignment from Pairagon GCACCGGTTAGAGGAGGGTCAGGCCACCAGCTGGTCCCGCCGTCTAAAAGTGTTCCTCTGTTGCACCCGGACAAAGGATTCCCAGTCA actcggttcctgttccacaatcttggcgtcataatttttctctatttcagACACCAACTAGAAGAGGGTCAGGCTACCAGCTGGTCTTGCCGGCTGAAAATCTTCTTCTGTTGCAGCTGTACAAAAGACCCTCAAGCAgtgagtccctgactttgataccttgaatgtattcccaggaggtaaggggg Alignment from Exonerate_protein2genome GCACCGGTTAGAGGAGGGTCAGGCCACCAGCTGGTCCCGCCGTCTAAAAGTGTTCCTCTGTTGCACCCGGACAAAGGATTCCCAGTCA actcggttcctgttccacaatcttggcgtcataatttttctctatttcagACACCAACTAGAAGAGGGTCAGGCTACCAGCTGGTCTTGCCGGCTGAAAATCTTCTTCTGTTGCAGCTGTACAAAAGACCCTCAAGCAgtgagtccctgactttgataccttgaatgtattcccaggaggtaaggggg Alignment from Exonerate_coding2genome actcggttcctgttccacaatcttggcgtcataatttttctctatttcagacaccaactagaagagggtcaggctaccagctggtcttgccggctgaaaatcttcttctgttgcagctgtacaaaagaccctcaagcagtgagtccctgactttgataccttgaatgtattcccaggaggtaaggggg Alignment from GeneWise GCACCGGTTAGAGGAGGGTCAGGCCACCAGCTGGTCCCGCCGTCTAAAAGTGTTCCTCTGTTGCACCCGGACAAAGGATTCCCAGTCA actcggttcctgttccacaatcttggcgtcataatttttctctatttcagACACCAACTAGAAGAGGGTCAGGCTACCAGCTGGTCTTGCCGGCTGAAAATCTTCTTCTGTTGCAGCTGTACAAAAGACCCTCAAGCAgtgagtccctgactttgataccttgaatgtattcccaggaggtaaggggg #### Dagla_ID2768_3 --> 2 - 1 Original Alignment ccATCTTGGTGATTGAGTTCATCTACGCTATCGTGGGCATCGTCTGGCTCACACAGTACTACACCTCCTGCAATGACCTCACTGCTAAGAATGTCACCCTCg tcatgcagtaagaagtggccttatctcaatgtgtatttgttttcctacagccATTTTGGTGATTGAGTTCATTTATGCTATTGTGGGCATTCTCTGGCTCACACAGTACTACACCTCCTGCAATGACCTTACTGCTAAAAATGTTACACTTggtaggagctctaaactcttactcttggtttgtgcattacatgcctaacat Alignment from CESAR ccATCTTGGTGATTGAGTTCATCTACGCTATCGTGGGCATCGTCTGGCTCACACAGTACTACACCTCCTGCAATGACCTCACTGCTAAGAATGTCACCCTCg tcatgcagtaagaagtggccttatctcaatgtgtatttgttttcctacagccATTTTGGTGATTGAGTTCATTTATGCTATTGTGGGCATTCTCTGGCTCACACAGTACTACACCTCCTGCAATGACCTTACTGCTAAAAATGTTACACTTggtaggagctctaaactcttactcttggtttgtgcattacatgcctaacat Alignment from Spaln_aa2Genome CCATCTTGGTGATTGAGTTCATCTACGCTATCGTGGGCATCGTCTGGCTCACACAGTACTACACCTCCTGCAATGACCTCACTGCTAAGAATGTCACCCTCG tcatgcagtaagaagtggccttatctcaatgtgtatttgttttcctacagCCATTTTGGTGATTGAGTTCATTTATGCTATTGTGGGCATTCTCTGGCTCACACAGTACTACACCTCCTGCAATGACCTTACTGCTAAAAATGTTACACTTGgtaggagctctaaactcttactcttggtttgtgcattacatgcctaacat Alignment from Spaln_nt2Genome CCATCTTGGTGATTGAGTTCATCTACGCTATCGTGGGCATCGTCTGGCTCACACAGTACTACACCTCCTGCAATGACCTCACTGCTAAGAATGTCACCCTCG tcatgcagtaagaagtggccttatctcaatgtgtatttgttttcctacagCCATTTTGGTGATTGAGTTCATTTATGCTATTGTGGGCATTCTCTGGCTCACACAGTACTACACCTCCTGCAATGACCTTACTGCTAAAAATGTTACACTTGgtaggagctctaaactcttactcttggtttgtgcattacatgcctaacat Alignment from Pairagon CCATCTTGGTGATTGAGTTCATCTACGCTATCGTGGGCATCGTCTGGCTCACACAGTACTACACCTCCTGCAATGACCTCACTGCTAAGAATGTCACCCTCG tcatgcagtaagaagtggccttatctcaatgtgtatttgttttcctacagCCATTTTGGTGATTGAGTTCATTTATGCTATTGTGGGCATTCTCTGGCTCACACAGTACTACACCTCCTGCAATGACCTTACTGCTAAAAATGTTACACTTGgtaggagctctaaactcttactcttggtttgtgcattacatgcctaacat Alignment from Exonerate_protein2genome CCATCTTGGTGATTGAGTTCATCTACGCTATCGTGGGCATCGTCTGGCTCACACAGTACTACACCTCCTGCAATGACCTCACTGCTAAGAATGTCACCCTCG tcatgcagtaagaagtggccttatctcaatgtgtatttgttttcctacagCCATTTTGGTGATTGAGTTCATTTATGCTATTGTGGGCATTCTCTGGCTCACACAGTACTACACCTCCTGCAATGACCTTACTGCTAAAAATGTTACACTTGgtaggagctctaaactcttactcttggtttgtgcattacatgcctaacat Alignment from Exonerate_coding2genome tcatgcagtaagaagtggccttatctcaatgtgtatttgttttcctacagccattttggtgattgagttcatttatgctattgtgggcattctctggctcacacagtactacacctcctgcaatgaccttactgctaaaaatgttacacttggtaggagctctaaactcttactcttggtttgtgcattacatgcctaacat Alignment from GeneWise CCATCTTGGTGATTGAGTTCATCTACGCTATCGTGGGCATCGTCTGGCTCACACAGTACTACACCTCCTGCAATGACCTCACTGCTAAGAATGTCACCCTCG tcatgcagtaagaagtggccttatctcaatgtgtatttgttttcctacagCCATTTTGGTGATTGAGTTCATTTATGCTATTGTGGGCATTCTCTGGCTCACACAGTACTACACCTCCTGCAATGACCTTACTGCTAAAAATGTTACACTTGgtaggagctctaaactcttactcttggtttgtgcattacatgcctaacat #### Dak_ID2899_14 --> 0 - 2 Original Alignment CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGaa gccttactacagctagtacaaatttattacgaagtcatatcttttttcagCTATATGGATTGTTCCTCACTGCTTCAGCCCAACCTCTG------AAAACTGACCTGCCAACCTGGTCTGCTGCCATGGATGCTGGCCTAGACTCCATGCAGaagtaaggcagtctttttacctctcaacaaaaagtgaggttgtgccatatgc Alignment from CESAR CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGaa gccttactacagctagtacaaatttattacgaagtcatatcttttttcagCTATATGGATTGTTCCTCACTGCTTCAGCCCAACCTCTG------AAAACTGACCTGCCAACCTGGTCTGCTGCCATGGATGCTGGCCTAGACTCCATGCAGaagtaaggcagtctttttacctctcaacaaaaagtgaggttgtgccatatgc Alignment from Spaln_aa2Genome CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA gccttactacagctagtacaaatttattacgaagtcatatcttttttcagCTATATGGATTGTTCCTCACTGCTTCAGCCCAACCTCTG------AAAACTGACCTGCCAACCTGGTCTGCTGCCATGGATGCTGGCCTAGACTCCATGCAGAAgtaaggcagtctttttacctctcaacaaaaagtgaggttgtgccatatgc Alignment from Spaln_nt2Genome CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA gccttactacagctagtacaaatttattacgaagtcatatcttttttcagCTATATGGATTGTTCCTCACTGCTTCAGCCCAACCTCT------GAAAACTGACCTGCCAACCTGGTCTGCTGCCATGGATGCTGGCCTAGACTCCATGCAGAAgtaaggcagtctttttacctctcaacaaaaagtgaggttgtgccatatgc Alignment from Pairagon CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA gccttactacagctagtacaaatttattacgaagtcatatcttttttcagCTATATGGATTGTTCCTCACTGCTTCAGCCCAACCTCT------GAAAACTGACCTGCCAACCTGGTCTGCTGCCATGGATGCTGGCCTAGACTCCATGCAGAAgtaaggcagtctttttacctctcaacaaaaagtgaggttgtgccatatgc Alignment from Exonerate_protein2genome CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA gccttactacagctagtacaaatttattacgaagtcatatcttttttcagCTATATGGATTGTTCCTCACTGCTTCAGCCCAACCTCTG------AAAACTGACCTGCCAACCTGGTCTGCTGCCATGGATGCTGGCCTAGACTCCATGCAGAAgtaaggcagtctttttacctctcaacaaaaagtgaggttgtgccatatgc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA gccttactacagctagtacaaatttattacgaagtcatatcttttttcagCTATATGGATTGTTCCTCACTGCTTCAGCCCAACCTCTGAAA------ACTGACCTGCCAACCTGGTCTGCTGCCATGGATGCTGGCCTAGACTCCATGCAGAAgtaaggcagtctttttacctctcaacaaaaagtgaggttgtgccatatgc #### Dak_ID2901_12 --> 2 - 1 Original Alignment gtGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAg gcacatgcatagggaatgtagaggttcatgttttgtttgttttcctacaggtGTAACATCAAAGCAGGTAGCCCTGGTA---TATCGGATATGTGCCACCCTCATAGGATCTGAAGAGCACCTGAATGCA---GAGAGAGCTGCTGGTGATGGA------GATTCCATGCACAGCCGTGCTTCCAAGggtgaggttccttcttccggccacaaaggccaatctttgggcctagctgtc Alignment from CESAR gtGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAg gcacatgcatagggaatgtagaggttcatgttttgtttgttttcctacaggtGTAACATCAAAGCAGGTAGCCCTGGTA---TATCGGATATGTGCCACCCTCATAGGATCTGAAGAGCACCTGAATGCA---GAGAGAGCTGCTGGTGATGGAGAT------TCCATGCACAGCCGTGCTTCCAAGggtgaggttccttcttccggccacaaaggccaatctttgggcctagctgtc Alignment from Spaln_aa2Genome GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG gcacatgcatagggaatgtagaggttcatgttttgtttgttttcctacagGTGTAACATCAAAGCAGGTAGCCCTGGTATAT---CGGATATGTGCCACCCTCATAGGATCTGAAGAGCACCTGAATGCA---GAGAGAGCTGCTGGTGATGGAGAT------TCCATGCACAGCCGTGCTTCCAAGGgtgaggttccttcttccggccacaaaggccaatctttgggcctagctgtc Alignment from Spaln_nt2Genome GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG gcacatgcatagggaatgtagaggttcatgttttgtttgttttcctacagGTGTAACATCAAAGCAGGTAGCCC---TGGTATATCGGATATGTGCCACCCTCATAGGATCTGAAGAGCACCTGAATGC---AGAGAGAGCTGCTGGTGATGGAGA------TTCCATGCACAGCCGTGCTTCCAAGGgtgaggttccttcttccggccacaaaggccaatctttgggcctagctgtc Alignment from Pairagon GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG gcacatgcatagggaatgtagaggttcatgttttgtttgttttcctacagGTGTAACATCAAAGCAGGTAGCCCTGGTAT---ATCGGATATGTGCCACCCTCATAGGATCTGAAGAGCACCTGAATGC---AGAGAGAGCTGCTGGTGATGGAGA------TTCCATGCACAGCCGTGCTTCCAAGGgtgaggttccttcttccggccacaaaggccaatctttgggcctagctgtc Alignment from Exonerate_protein2genome GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG gcacatgcatagggaatgtagaggttcatgttttgtttgttttcctacagGTGTAACATCAAAGCAGGTAGCCCTGGTATAT---CGGATATGTGCCACCCTCATAGGATCTGAAGAGCACCTGAATGCA---GAGAGAGCTGCTGGTGATGGAGAT------TCCATGCACAGCCGTGCTTCCAAGGgtgaggttccttcttccggccacaaaggccaatctttgggcctagctgtc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG gcacatgcatagggaatgtagaggttcatgttttgtttgttttcctacagGTGTAACATCAAAGCAGGTAGCCCTGGTATAT---CGGATATGTGCCACCCTCATAGGATCTGAAGAGCACCTGAATGCA---GAGAGAGCTGCTGGTGATGGAGAT------TCCATGCACAGCCGTGCTTCCAAGGgtgaggttccttcttccggccacaaaggccaatctttgggcctagctgtc #### Dak_ID2904_9 --> 2 - 1 Original Alignment gcTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGg gtgtgtctaggcatgctccaagcatgctctaaagtatttttgtcttctaggtTCATCAGTGGTACTGATAGTGAATAATCTTGGTGGTCTGTCCTTCCGGGAACTGGGTATCACTGCTGATGCTGCCATACATTTGCTTggtaaagaacctcatcaggcatccatatggaaaccctttaatgcctatgcc Alignment from CESAR gcTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGg gtgtgtctaggcatgctccaagcatgctctaaagtatttttgtcttctaggtTCATCAGTGGTACTGATAGTGAATAATCTTGGTGGTCTGTCCTTCCGGGAACTGGGTATCACTGCTGATGCTGCCATACATTTGCTTggtaaagaacctcatcaggcatccatatggaaaccctttaatgcctatgcc Alignment from Spaln_aa2Genome GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG gtgtgtctaggcatgctccaagcatgctctaaagtatttttgtcttctagGTTCATCAGTGGTACTGATAGTGAATAATCTTGGTGGTCTGTCCTTCCGGGAACTGGGTATCACTGCTGATGCTGCCATACATTTGCTTGgtaaagaacctcatcaggcatccatatggaaaccctttaatgcctatgcc Alignment from Spaln_nt2Genome GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG gtgtgtctaggcatgctccaagcatgctctaaagtatttttgtcttctagGTTCATCAGTGGTACTGATAGTGAATAATCTTGGTGGTCTGTCCTTCCGGGAACTGGGTATCACTGCTGATGCTGCCATACATTTGCTTGgtaaagaacctcatcaggcatccatatggaaaccctttaatgcctatgcc Alignment from Pairagon GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG gtgtgtctaggcatgctccaagcatgctctaaagtatttttgtcttctagGTTCATCAGTGGTACTGATAGTGAATAATCTTGGTGGTCTGTCCTTCCGGGAACTGGGTATCACTGCTGATGCTGCCATACATTTGCTTGgtaaagaacctcatcaggcatccatatggaaaccctttaatgcctatgcc Alignment from Exonerate_protein2genome GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG gtgtgtctaggcatgctccaagcatgctctaaagtatttttgtcttctagGTTCATCAGTGGTACTGATAGTGAATAATCTTGGTGGTCTGTCCTTCCGGGAACTGGGTATCACTGCTGATGCTGCCATACATTTGCTTGgtaaagaacctcatcaggcatccatatggaaaccctttaatgcctatgcc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG gtgtgtctaggcatgctccaagcatgctctaaagtatttttgtcttctagGTTCATCAGTGGTACTGATAGTGAATAATCTTGGTGGTCTGTCCTTCCGGGAACTGGGTATCACTGCTGATGCTGCCATACATTTGCTTGgtaaagaacctcatcaggcatccatatggaaaccctttaatgcctatgcc #### Dclre1a_ID12122_5 --> 1 - 2 Original Alignment cTGTCCAGGTGCTACCATGATCCTTTTCCAGCTTCCCAACGGTGCTGTCATACTGCACACCGGAGACTTCCGAGCGGACCCCAGCATGGAACGCTCTCGCCTGGCGGGCCGCAAAGTCCACACACTGTTCCTGGATACCac agctgcacttccaactacaatgtttcaataaaacattttgctattattagtTGTTCAGGTGCTACCATGATGCTTTTCCAGCTACCAAATGGCGCTGTCATACGGCACACTGGAGACTTCCAAACAGACCCCAGCATGGAACACTCACACCTGGCAGGGCAAAAGGTGCACACAGTATTTCTAGATACTatgtgagaggctatgtttccaaactgtttcccatctgaaactacccgttatg Alignment from CESAR cTGTCCAGGTGCTACCATGATCCTTTTCCAGCTTCCCAACGGTGCTGTCATACTGCACACCGGAGACTTCCGAGCGGACCCCAGCATGGAACGCTCTCGCCTGGCGGGCCGCAAAGTCCACACACTGTTCCTGGATACCac agctgcacttccaactacaatgtttcaataaaacattttgctattattagtTGTTCAGGTGCTACCATGATGCTTTTCCAGCTACCAAATGGCGCTGTCATACGGCACACTGGAGACTTCCAAACAGACCCCAGCATGGAACACTCACACCTGGCAGGGCAAAAGGTGCACACAGTATTTCTAGATACTatgtgagaggctatgtttccaaactgtttcccatctgaaactacccgttatg Alignment from Spaln_aa2Genome CTGTCCAGGTGCTACCATGATCCTTTTCCAGCTTCCCAACGGTGCTGTCATACTGCACACCGGAGACTTCCGAGCGGACCCCAGCATGGAACGCTCTCGCCTGGCGGGCCGCAAAGTCCACACACTGTTCCTGGATACCAC agctgcacttccaactacaatgtttcaataaaacattttgctattattagTTGTTCAGGTGCTACCATGATGCTTTTCCAGCTACCAAATGGCGCTGTCATACGGCACACTGGAGACTTCCAAACAGACCCCAGCATGGAACACTCACACCTGGCAGGGCAAAAGGTGCACACAGTATTTCTAGATACTATgtgagaggctatgtttccaaactgtttcccatctgaaactacccgttatg Alignment from Spaln_nt2Genome CTGTCCAGGTGCTACCATGATCCTTTTCCAGCTTCCCAACGGTGCTGTCATACTGCACACCGGAGACTTCCGAGCGGACCCCAGCATGGAACGCTCTCGCCTGGCGGGCCGCAAAGTCCACACACTGTTCCTGGATACCAC agctgcacttccaactacaatgtttcaataaaacattttgctattattagTTGTTCAGGTGCTACCATGATGCTTTTCCAGCTACCAAATGGCGCTGTCATACGGCACACTGGAGACTTCCAAACAGACCCCAGCATGGAACACTCACACCTGGCAGGGCAAAAGGTGCACACAGTATTTCTAGATACTATgtgagaggctatgtttccaaactgtttcccatctgaaactacccgttatg Alignment from Pairagon CTGTCCAGGTGCTACCATGATCCTTTTCCAGCTTCCCAACGGTGCTGTCATACTGCACACCGGAGACTTCCGAGCGGACCCCAGCATGGAACGCTCTCGCCTGGCGGGCCGCAAAGTCCACACACTGTTCCTGGATACCAC agctgcacttccaactacaatgtttcaataaaacattttgctattattagTTGTTCAGGTGCTACCATGATGCTTTTCCAGCTACCAAATGGCGCTGTCATACGGCACACTGGAGACTTCCAAACAGACCCCAGCATGGAACACTCACACCTGGCAGGGCAAAAGGTGCACACAGTATTTCTAGATACTATgtgagaggctatgtttccaaactgtttcccatctgaaactacccgttatg Alignment from Exonerate_protein2genome CTGTCCAGGTGCTACCATGATCCTTTTCCAGCTTCCCAACGGTGCTGTCATACTGCACACCGGAGACTTCCGAGCGGACCCCAGCATGGAACGCTCTCGCCTGGCGGGCCGCAAAGTCCACACACTGTTCCTGGATACCAC agctgcacttccaactacaatgtttcaataaaacattttgctattattagTTGTTCAGGTGCTACCATGATGCTTTTCCAGCTACCAAATGGCGCTGTCATACGGCACACTGGAGACTTCCAAACAGACCCCAGCATGGAACACTCACACCTGGCAGGGCAAAAGGTGCACACAGTATTTCTAGATACTATgtgagaggctatgtttccaaactgtttcccatctgaaactacccgttatg Alignment from Exonerate_coding2genome CTGTCCAGGTGCTACCATGATCCTTTTCCAGCTTCCCAACGGTGCTGTCATACTGCACACCGGAGACTTCCGAGCGGACCCCAGCATGGAACGCTCTCGCCTGGCGGGCCGCAAAGTCCACACACTGTTCCTGGATACCAC agctgcacttccaactacaatgtttcaataaaacattttgctattattagTTGTTCAGGTGCTACCATGATGCTTTTCCAGCTACCAAATGGCGCTGTCATACGGCACACTGGAGACTTCCAAACAGACCCCAGCATGGAACACTCACACCTGGCAGGGCAAAAGGTGCACACAGTATTTCTAGATACTATgtgagaggctatgtttccaaactgtttcccatctgaaactacccgttatg Alignment from GeneWise CTGTCCAGGTGCTACCATGATCCTTTTCCAGCTTCCCAACGGTGCTGTCATACTGCACACCGGAGACTTCCGAGCGGACCCCAGCATGGAACGCTCTCGCCTGGCGGGCCGCAAAGTCCACACACTGTTCCTGGATACCAC agctgcacttccaactacaatgtttcaataaaacattttgctattattagTTGTTCAGGTGCTACCATGATGCTTTTCCAGCTACCAAATGGCGCTGTCATACGGCACACTGGAGACTTCCAAACAGACCCCAGCATGGAACACTCACACCTGGCAGGGCAAAAGGTGCACACAGTATTTCTAGATACTATgtgagaggctatgtttccaaactgtttcccatctgaaactacccgttatg #### Ddb1_ID2920_5 --> 0 - 1 Original Alignment GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAG---------GAGTTCAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAg caacaacatgatgctgatgcctattcaactgtgaatgtcctacactgcagGATCCTCAGGGGCAACACATTAAGACTTACAAAGTGTCCCTTCAAGAAAAAGAATTTGAAGAATTCAATAATGGCCCATGGAAACAGGAGAATGTACAGGCTGAAGCTTCTACGGTAACAGCAggtgagtggcctagattctaggtctgatagagttctctcccaactcctcct Alignment from CESAR GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAGGAG---------TTCAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAg caacaacatgatgctgatgcctattcaactgtgaatgtcctacactgcagGATCCTCAGGGGCAACACATTAAGACTTACAAAGTGTCCCTTCAAGAAAAAGAATTTGAAGAATTCAATAATGGCCCATGGAAACAGGAGAATGTACAGGCTGAAGCTTCTACGGTAACAGCAggtgagtggcctagattctaggtctgatagagttctctcccaactcctcct Alignment from Spaln_aa2Genome GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAG---------GAGTTCAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAG caacaacatgatgctgatgcctattcaactgtgaatgtcctacactgcagGATCCTCAGGGGCAACACATTAAGACTTACAAAGTGTCCCTTCAAGAAAAAGAATTTGAAGAATTCAATAATGGCCCATGGAAACAGGAGAATGTACAGGCTGAAGCTTCTACGGTAACAGCAGgtgagtggcctagattctaggtctgatagagttctctcccaactcctcct Alignment from Spaln_nt2Genome GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAGGAGTT---------CAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAG caacaacatgatgctgatgcctattcaactgtgaatgtcctacactgcagGATCCTCAGGGGCAACACATTAAGACTTACAAAGTGTCCCTTCAAGAAAAAGAATTTGAAGAATTCAATAATGGCCCATGGAAACAGGAGAATGTACAGGCTGAAGCTTCTACGGTAACAGCAGgtgagtggcctagattctaggtctgatagagttctctcccaactcctcct Alignment from Pairagon GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGA---------AGGAGTTCAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAG caacaacatgatgctgatgcctattcaactgtgaatgtcctacactgcagGATCCTCAGGGGCAACACATTAAGACTTACAAAGTGTCCCTTCAAGAAAAAGAATTTGAAGAATTCAATAATGGCCCATGGAAACAGGAGAATGTACAGGCTGAAGCTTCTACGGTAACAGCAGgtgagtggcctagattctaggtctgatagagttctctcccaactcctcct Alignment from Exonerate_protein2genome GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAG---------GAGTTCAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAG caacaacatgatgctgatgcctattcaactgtgaatgtcctacactgcagGATCCTCAGGGGCAACACATTAAGACTTACAAAGTGTCCCTTCAAGAAAAAGAATTTGAAGAATTCAATAATGGCCCATGGAAACAGGAGAATGTACAGGCTGAAGCTTCTACGGTAACAGCAGgtgagtggcctagattctaggtctgatagagttctctcccaactcctcct Alignment from Exonerate_coding2genome GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAG---------GAGTTCAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAG caacaacatgatgctgatgcctattcaactgtgaatgtcctacactgcagGATCCTCAGGGGCAACACATTAAGACTTACAAAGTGTCCCTTCAAGAAAAAGAATTTGAAGAATTCAATAATGGCCCATGGAAACAGGAGAATGTACAGGCTGAAGCTTCTACGGTAACAGCAGgtgagtggcctagattctaggtctgatagagttctctcccaactcctcct Alignment from GeneWise GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAGGAGTTC---------AACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAG caacaacatgatgctgatgcctattcaactgtgaatgtcctacactgcagGATCCTCAGGGGCAACACATTAAGACTTACAAAGTGTCCCTTCAAGAAAAAGAATTTGAAGAATTCAATAATGGCCCATGGAAACAGGAGAATGTACAGGCTGAAGCTTCTACGGTAACAGCAGgtgagtggcctagattctaggtctgatagagttctctcccaactcctcct #### Ddb1_ID2921_6 --> 2 - 0 Original Alignment tcCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCAATCACCTATCATAACGGTGATAAATACCTGGCAATTGCTCCTCCTATCATTAAG ttgaagaccatttgaaaagtgtccttagagtggttatgctttgtccccagtcCCAGAGCCTTTTGGAGGTGCTATTATCATTGGCCAGGAGTCGATTACCTATCATAATGGTGATAAGTATCTAGCAATTGCTCCTCCAATCATTAAGgtatgtatagcatccatatctcactctgttttatctatgggctatatttc Alignment from CESAR tcCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCAATCACCTATCATAACGGTGATAAATACCTGGCAATTGCTCCTCCTATCATTAAG ttgaagaccatttgaaaagtgtccttagagtggttatgctttgtccccagtcCCAGAGCCTTTTGGAGGTGCTATTATCATTGGCCAGGAGTCGATTACCTATCATAATGGTGATAAGTATCTAGCAATTGCTCCTCCAATCATTAAGgtatgtatagcatccatatctcactctgttttatctatgggctatatttc Alignment from Spaln_aa2Genome TCCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCAATCACCTATCATAACGGTGATAAATACCTGGCAATTGCTCCTCCTATCATTAAG ttgaagaccatttgaaaagtgtccttagagtggttatgctttgtccccagTCCCAGAGCCTTTTGGAGGTGCTATTATCATTGGCCAGGAGTCGATTACCTATCATAATGGTGATAAGTATCTAGCAATTGCTCCTCCAATCATTAAGgtatgtatagcatccatatctcactctgttttatctatgggctatatttc Alignment from Spaln_nt2Genome TCCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCAATCACCTATCATAACGGTGATAAATACCTGGCAATTGCTCCTCCTATCATTAAG ttgaagaccatttgaaaagtgtccttagagtggttatgctttgtccccagTCCCAGAGCCTTTTGGAGGTGCTATTATCATTGGCCAGGAGTCGATTACCTATCATAATGGTGATAAGTATCTAGCAATTGCTCCTCCAATCATTAAGgtatgtatagcatccatatctcactctgttttatctatgggctatatttc Alignment from Pairagon TCCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCAATCACCTATCATAACGGTGATAAATACCTGGCAATTGCTCCTCCTATCATTAAG ttgaagaccatttgaaaagtgtccttagagtggttatgctttgtccccagTCCCAGAGCCTTTTGGAGGTGCTATTATCATTGGCCAGGAGTCGATTACCTATCATAATGGTGATAAGTATCTAGCAATTGCTCCTCCAATCATTAAGgtatgtatagcatccatatctcactctgttttatctatgggctatatttc Alignment from Exonerate_protein2genome TCCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCAATCACCTATCATAACGGTGATAAATACCTGGCAATTGCTCCTCCTATCATTAAG ttgaagaccatttgaaaagtgtccttagagtggttatgctttgtccccagTCCCAGAGCCTTTTGGAGGTGCTATTATCATTGGCCAGGAGTCGATTACCTATCATAATGGTGATAAGTATCTAGCAATTGCTCCTCCAATCATTAAGgtatgtatagcatccatatctcactctgttttatctatgggctatatttc Alignment from Exonerate_coding2genome TCCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCAATCACCTATCATAACGGTGATAAATACCTGGCAATTGCTCCTCCTATCATTAAG ttgaagaccatttgaaaagtgtccttagagtggttatgctttgtccccagTCCCAGAGCCTTTTGGAGGTGCTATTATCATTGGCCAGGAGTCGATTACCTATCATAATGGTGATAAGTATCTAGCAATTGCTCCTCCAATCATTAAGgtatgtatagcatccatatctcactctgttttatctatgggctatatttc Alignment from GeneWise TCCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCAATCACCTATCATAACGGTGATAAATACCTGGCAATTGCTCCTCCTATCATTAAG ttgaagaccatttgaaaagtgtccttagagtggttatgctttgtccccagTCCCAGAGCCTTTTGGAGGTGCTATTATCATTGGCCAGGAGTCGATTACCTATCATAATGGTGATAAGTATCTAGCAATTGCTCCTCCAATCATTAAGgtatgtatagcatccatatctcactctgttttatctatgggctatatttc #### Ddb1_ID2923_8 --> 0 - 0 Original Alignment ACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGTGTTGTATTTGTCGGGTCTCGCCTAGGTGACTCCCAGCTCGTAAAG ggtggcctgagggctgatactcattctctggtgatgctcttgttccccagACCTCCATTGCTGAATGCCTAACCTATCTTGACAATGGTGTTGTATTTGTTGGGTCACGTCTGGGTGACTCTCAACTTGTCAAGgtaagagaattcaggtagaaaccacatgtaagtctacaatgtatatatcc Alignment from CESAR ACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGTGTTGTATTTGTCGGGTCTCGCCTAGGTGACTCCCAGCTCGTAAAG ggtggcctgagggctgatactcattctctggtgatgctcttgttccccagACCTCCATTGCTGAATGCCTAACCTATCTTGACAATGGTGTTGTATTTGTTGGGTCACGTCTGGGTGACTCTCAACTTGTCAAGgtaagagaattcaggtagaaaccacatgtaagtctacaatgtatatatcc Alignment from Spaln_aa2Genome ACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGTGTTGTATTTGTCGGGTCTCGCCTAGGTGACTCCCAGCTCGTAAAG ggtggcctgagggctgatactcattctctggtgatgctcttgttccccagACCTCCATTGCTGAATGCCTAACCTATCTTGACAATGGTGTTGTATTTGTTGGGTCACGTCTGGGTGACTCTCAACTTGTCAAGgtaagagaattcaggtagaaaccacatgtaagtctacaatgtatatatcc Alignment from Spaln_nt2Genome ACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGTGTTGTATTTGTCGGGTCTCGCCTAGGTGACTCCCAGCTCGTAAAG ggtggcctgagggctgatactcattctctggtgatgctcttgttccccagACCTCCATTGCTGAATGCCTAACCTATCTTGACAATGGTGTTGTATTTGTTGGGTCACGTCTGGGTGACTCTCAACTTGTCAAGgtaagagaattcaggtagaaaccacatgtaagtctacaatgtatatatcc Alignment from Pairagon ACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGTGTTGTATTTGTCGGGTCTCGCCTAGGTGACTCCCAGCTCGTAAAG ggtggcctgagggctgatactcattctctggtgatgctcttgttccccagACCTCCATTGCTGAATGCCTAACCTATCTTGACAATGGTGTTGTATTTGTTGGGTCACGTCTGGGTGACTCTCAACTTGTCAAGgtaagagaattcaggtagaaaccacatgtaagtctacaatgtatatatcc Alignment from Exonerate_protein2genome ACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGTGTTGTATTTGTCGGGTCTCGCCTAGGTGACTCCCAGCTCGTAAAG ggtggcctgagggctgatactcattctctggtgatgctcttgttccccagACCTCCATTGCTGAATGCCTAACCTATCTTGACAATGGTGTTGTATTTGTTGGGTCACGTCTGGGTGACTCTCAACTTGTCAAGgtaagagaattcaggtagaaaccacatgtaagtctacaatgtatatatcc Alignment from Exonerate_coding2genome ACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGTGTTGTATTTGTCGGGTCTCGCCTAGGTGACTCCCAGCTCGTAAAG ggtggcctgagggctgatactcattctctggtgatgctcttgttccccagACCTCCATTGCTGAATGCCTAACCTATCTTGACAATGGTGTTGTATTTGTTGGGTCACGTCTGGGTGACTCTCAACTTGTCAAGgtaagagaattcaggtagaaaccacatgtaagtctacaatgtatatatcc Alignment from GeneWise ACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGTGTTGTATTTGTCGGGTCTCGCCTAGGTGACTCCCAGCTCGTAAAG ggtggcctgagggctgatactcattctctggtgatgctcttgttccccagACCTCCATTGCTGAATGCCTAACCTATCTTGACAATGGTGTTGTATTTGTTGGGTCACGTCTGGGTGACTCTCAACTTGTCAAGgtaagagaattcaggtagaaaccacatgtaagtctacaatgtatatatcc #### Ddb1_ID2937_22 --> 0 - 0 Original Alignment GTGCGGCTCTATGAGTGGACCACAGAAAAGGAGCTTCGCACTGAGTGTAATCACTACAACAACATCATGGCCCTGTACCTGAAGACCAAGGGCGACTTCATCCTGGTGGGCGACCTCATGCGCTCAGTGCTGCTGCTTGCCTACAAGCCTATGGAAGGAAACTTTGAAGAG ctgcctgtagtggttcagagaatccctcagtctctttgcctgtttttcagGTGTGGCTTTATGAATGGACCACAGAAAAAGAGCTACACACCGAGTGTAATCACTACAATAATATAATGGCCCTGTATCTAAAAACAAAGGGTGATTTCATTCTGGTGGGTGATGTTATGCATTCAGTCCTCCTGCTTGCATACCAGCCTACAGAAGGAAAA------GAGgtaggtaccagattcaactggcattcatgagatatattacaacacaggtt Alignment from CESAR GTGCGGCTCTATGAGTGGACCACAGAAAAGGAGCTTCGCACTGAGTGTAATCACTACAACAACATCATGGCCCTGTACCTGAAGACCAAGGGCGACTTCATCCTGGTGGGCGACCTCATGCGCTCAGTGCTGCTGCTTGCCTACAAGCCTATGGAAGGAAACTTTGAAGAG ctgcctgtagtggttcagagaatccctcagtctctttgcctgtttttcagGTGTGGCTTTATGAATGGACCACAGAAAAAGAGCTACACACCGAGTGTAATCACTACAATAATATAATGGCCCTGTATCTAAAAACAAAGGGTGATTTCATTCTGGTGGGTGATGTTATGCATTCAGTCCTCCTGCTTGCATACCAGCCTACAGAAGGA------AAAGAGgtaggtaccagattcaactggcattcatgagatatattacaacacaggtt Alignment from Spaln_aa2Genome GTGCGGCTCTATGAGTGGACCACAGAAAAGGAGCTTCGCACTGAGTGTAATCACTACAACAACATCATGGCCCTGTACCTGAAGACCAAGGGCGACTTCATCCTGGTGGGCGACCTCATGCGCTCAGTGCTGCTGCTTGCCTACAAGCCTATGGAAGGAAACTTTGAAGAG ctgcctgtagtggttcagagaatccctcagtctctttgcctgtttttcagGTGTGGCTTTATGAATGGACCACAGAAAAAGAGCTACACACCGAGTGTAATCACTACAATAATATAATGGCCCTGTATCTAAAAACAAAGGGTGATTTCATTCTGGTGGGTGATGTTATGCATTCAGTCCTCCTGCTTGCATACCAGCCTACAGAAGGAAAA------GAGgtaggtaccagattcaactggcattcatgagatatattacaacacaggtt Alignment from Spaln_nt2Genome GTGCGGCTCTATGAGTGGACCACAGAAAAGGAGCTTCGCACTGAGTGTAATCACTACAACAACATCATGGCCCTGTACCTGAAGACCAAGGGCGACTTCATCCTGGTGGGCGACCTCATGCGCTCAGTGCTGCTGCTTGCCTACAAGCCTATGGAAGGAAACTTTGAAGAG ctgcctgtagtggttcagagaatccctcagtctctttgcctgtttttcagGTGTGGCTTTATGAATGGACCACAGAAAAAGAGCTACACACCGAGTGTAATCACTACAATAATATAATGGCCCTGTATCTAAAAACAAAGGGTGATTTCATTCTGGTGGGTGATGTTATGCATTCAGTCCTCCTGCTTGCATACCAGCCTACAGAAGGAA------AAGAGgtaggtaccagattcaactggcattcatgagatatattacaacacaggtt Alignment from Pairagon GTGCGGCTCTATGAGTGGACCACAGAAAAGGAGCTTCGCACTGAGTGTAATCACTACAACAACATCATGGCCCTGTACCTGAAGACCAAGGGCGACTTCATCCTGGTGGGCGACCTCATGCGCTCAGTGCTGCTGCTTGCCTACAAGCCTATGGAAGGAAACTTTGAAGAG ctgcctgtagtggttcagagaatccctcagtctctttgcctgtttttcagGTGTGGCTTTATGAATGGACCACAGAAAAAGAGCTACACACCGAGTGTAATCACTACAATAATATAATGGCCCTGTATCTAAAAACAAAGGGTGATTTCATTCTGGTGGGTGATGTTATGCATTCAGTCCTCCTGCTTGCATACCAGCCTACAGAAGGAA------AAGAGgtaggtaccagattcaactggcattcatgagatatattacaacacaggtt Alignment from Exonerate_protein2genome GTGCGGCTCTATGAGTGGACCACAGAAAAGGAGCTTCGCACTGAGTGTAATCACTACAACAACATCATGGCCCTGTACCTGAAGACCAAGGGCGACTTCATCCTGGTGGGCGACCTCATGCGCTCAGTGCTGCTGCTTGCCTACAAGCCTATGGAAGGAAACTTTGAAGAG ctgcctgtagtggttcagagaatccctcagtctctttgcctgtttttcagGTGTGGCTTTATGAATGGACCACAGAAAAAGAGCTACACACCGAGTGTAATCACTACAATAATATAATGGCCCTGTATCTAAAAACAAAGGGTGATTTCATTCTGGTGGGTGATGTTATGCATTCAGTCCTCCTGCTTGCATACCAGCCTACAGAAGGA------AAAGAGgtaggtaccagattcaactggcattcatgagatatattacaacacaggtt Alignment from Exonerate_coding2genome GTGCGGCTCTATGAGTGGACCACAGAAAAGGAGCTTCGCACTGAGTGTAATCACTACAACAACATCATGGCCCTGTACCTGAAGACCAAGGGCGACTTCATCCTGGTGGGCGACCTCATGCGCTCAGTGCTGCTGCTTGCCTACAAGCCTATGGAAGGAAACTTTGAAGAG ctgcctgtagtggttcagagaatccctcagtctctttgcctgtttttcagGTGTGGCTTTATGAATGGACCACAGAAAAAGAGCTACACACCGAGTGTAATCACTACAATAATATAATGGCCCTGTATCTAAAAACAAAGGGTGATTTCATTCTGGTGGGTGATGTTATGCATTCAGTCCTCCTGCTTGCATACCAGCCTACAGAAGGA------AAAGAGgtaggtaccagattcaactggcattcatgagatatattacaacacaggtt Alignment from GeneWise GTGCGGCTCTATGAGTGGACCACAGAAAAGGAGCTTCGCACTGAGTGTAATCACTACAACAACATCATGGCCCTGTACCTGAAGACCAAGGGCGACTTCATCCTGGTGGGCGACCTCATGCGCTCAGTGCTGCTGCTTGCCTACAAGCCTATGGAAGGAAACTTTGAAGAG ctgcctgtagtggttcagagaatccctcagtctctttgcctgtttttcagGTGTGGCTTTATGAATGGACCACAGAAAAAGAGCTACACACCGAGTGTAATCACTACAATAATATAATGGCCCTGTATCTAAAAACAAAGGGTGATTTCATTCTGGTGGGTGATGTTATGCATTCAGTCCTCCTGCTTGCATACCAGCCTACAGAAGGA------AAAGAGgtaggtaccagattcaactggcattcatgagatatattacaacacaggtt #### Ddb1_ID2939_24 --> 1 - 1 Original Alignment tGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAg taaggcttggtagaggggagtgctctggtctcccctgcttctccccacagtGCCGCAACAACTGTTGAGGAACGTCAGCATTTACAGGAAATAGTTCTCTTCCATCTAGGGGAGTTTGTCATTGTGTTTTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCCTCCACTCCTACGACTCAGGGATCAGTCCTTTTTGGCACAGTCAATGTCATGATAggtaagagctgtgggatggcttgcttatgcaaagtgtaatttttcctatgt Alignment from CESAR tGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAg taaggcttggtagaggggagtgctctggtctcccctgcttctccccacagtGCCGCAACAACTGTTGAGGAACGTCAGCATTTACAGGAAATAGTTCTCTTCCATCTAGGGGAGTTTGTCATTGTGTTTTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCCTCCACTCCTACGACTCAGGGATCAGTCCTTTTTGGCACAGTCAATGTCATGATAggtaagagctgtgggatggcttgcttatgcaaagttgccactctttcctta Alignment from Spaln_aa2Genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCT---ACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG taaggcttggtagaggggagtgctctggtctcccctgcttctccccacagTGCCGCAACAACTGTTGAGGAACGTCAGCATTTACAGGAAATAGTTCTCTTCCATCTAGGGGAGTTTGTCATTGTGTTTTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCCTCCACTCCTACGACTCAGGGATCAGTCCTTTTTGGCACAGTCAATGTCATGATAGgtaagagctgtgggatggcttgcttatgcaaagtgtaatttttcctatgt Alignment from Spaln_nt2Genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG taaggcttggtagaggggagtgctctggtctcccctgcttctccccacagTGCCGCAACAACTGTTGAGGAACGTCAGCATTTACAGGAAATAGTTCTCTTCCATCTAGGGGAGTTTGTCATTGTGTTTTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCCTCCACTCCTACGACTCAGGGATCAGTCCTTTTTGGCACAGTCAATGTCATGATAGgtaagagctgtgggatggcttgcttatgcaaagtgtaatttttcctatgt Alignment from Pairagon TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG taaggcttggtagaggggagtgctctggtctcccctgcttctccccacagTGCCGCAACAACTGTTGAGGAACGTCAGCATTTACAGGAAATAGTTCTCTTCCATCTAGGGGAGTTTGTCATTGTGTTTTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCCTCCACTCCTACGACTCAGGGATCAGTCCTTTTTGGCACAGTCAATGTCATGATAGgtaagagctgtgggatggcttgcttatgcaaagtgtaatttttcctatgt Alignment from Exonerate_protein2genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCT---ACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG taaggcttggtagaggggagtgctctggtctcccctgcttctccccacagTGCCGCAACAACTGTTGAGGAACGTCAGCATTTACAGGAAATAGTTCTCTTCCATCTAGGGGAGTTTGTCATTGTGTTTTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCCTCCACTCCTACGACTCAGGGATCAGTCCTTTTTGGCACAGTCAATGTCATGATAGgtaagagctgtgggatggcttgcttatgcaaagtgtaatttttcctatgt Alignment from Exonerate_coding2genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCT---ACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG taaggcttggtagaggggagtgctctggtctcccctgcttctccccacagTGCCGCAACAACTGTTGAGGAACGTCAGCATTTACAGGAAATAGTTCTCTTCCATCTAGGGGAGTTTGTCATTGTGTTTTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCCTCCACTCCTACGACTCAGGGATCAGTCCTTTTTGGCACAGTCAATGTCATGATAGgtaagagctgtgggatggcttgcttatgcaaagtgtaatttttcctatgt Alignment from GeneWise TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG taaggcttggtagaggggagtgctctggtctcccctgcttctccccacagTGCCGCAACAACTGTTGAGGAACGTCAGCATTTACAGGAAATAGTTCTCTTCCATCTAGGGGAGTTTGTCATTGTGTTTTGCCACAGCTCTCTAGTTATGAAGAATCTGGGTGAGGCCTCCACTCCTACGACTCAGGGATCAGTCCTTTTTGGCACAGTCAATGTCATGATAGgtaagagctgtgggatggcttgcttatgcaaagtgtaatttttcctatgt #### Dkk1_ID6483_2 --> 0 - 1 Original Alignment CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATg ttatttgggaactcaactgatctacctgtaacaattctcattcttctcagCCATTCCCTTGTGTTATAGATGAGGAGTGTGGTTCTGATAAACATAGTCCCAGTCCCAGCTGTGGAGCGGCT---GTTGAT------CAGATCTGCTTGGCTTGCCGAAGACACAGAAAGTGTTGTGTAAGGCATGCCATGTGTTGCCCTGAGAACCACTGCAAGAATcgtaattgtaccccagtatctattgatggctttggttaacaagttctatgg Alignment from CESAR CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATg ttatttgggaactcaactgatctacctgtaacaattctcattcttctcagCCATTCCCTTGTGTTATAGATGAGGAGTGTGGTTCTGATAAACATAGTCCCAGTCCCAGCTGTGGAGCGGCT---GTTGAT------CAGATCTGCTTGGCTTGCCGAAGACACAGAAAGTGTTGTGTAAGGCATGCCATGTGTTGCCCTGAGAACCACTGCAAGAATcgtaattgtaccccagtatctattgatggctttggttaacaagttctatgg Alignment from Spaln_aa2Genome CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG ttatttgggaactcaactgatctacctgtaacaattctcattcttctcagCCATTCCCTTGTGTTATAGATGAGGAGTGTGGTTCTGATAAACATAGTCCCAGTCCCAGCTGTGGAGCGGCT---------GTTGATCAGATCTGCTTGGCTTGCCGAAGACACAGAAAGTGTTGTGTAAGGCATGCCATGTGTTGCCCTGAGAACCACTGCAAGAATCgtaattgtaccccagtatctattgatggctttggttaacaagttctatgg Alignment from Spaln_nt2Genome CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG ttatttgggaactcaactgatctacctgtaacaattctcattcttctcagCCATTCCCTTGTGTTATAGATGAGGAGTGTGGTTCTGATAAACATAGTCCCAGTCCCAGCTGTGGAGCGGC---------TGTTGATCAGATCTGCTTGGCTTGCCGAAGACACAGAAAGTGTTGTGTAAGGCATGCCATGTGTTGCCCTGAGAACCACTGCAAGAATCgtaattgtaccccagtatctattgatggctttggttaacaagttctatgg Alignment from Pairagon CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG ttatttgggaactcaactgatctacctgtaacaattctcattcttctcagCCATTCCCTTGTGTTATAGATGAGGAGTGTGGTTCTGATAAACATAGTCCCAGTCCCAGCTGTGGAGCGGCT---------GTTGATCAGATCTGCTTGGCTTGCCGAAGACACAGAAAGTGTTGTGTAAGGCATGCCATGTGTTGCCCTGAGAACCACTGCAAGAATCgtaattgtaccccagtatctattgatggctttggttaacaagttctatgg Alignment from Exonerate_protein2genome CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG ttatttgggaactcaactgatctacctgtaacaattctcattcttctcagCCATTCCCTTGTGTTATAGATGAGGAGTGTGGTTCTGATAAACATAGTCCCAGTCCCAGCTGTGGAGCGGCT---------GTTGATCAGATCTGCTTGGCTTGCCGAAGACACAGAAAGTGTTGTGTAAGGCATGCCATGTGTTGCCCTGAGAACCACTGCAAGAATCgtaattgtaccccagtatctattgatggctttggttaacaagttctatgg Alignment from Exonerate_coding2genome CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG ttatttgggaactcaactgatctacctgtaacaattctcattcttctcagCCATTCCCTTGTGTTATAGATGAGGAGTGTGGTTCTGATAAACATAGTCCCAGTCCCAGCTGTGGAGCGGCT---------GTTGATCAGATCTGCTTGGCTTGCCGAAGACACAGAAAGTGTTGTGTAAGGCATGCCATGTGTTGCCCTGAGAACCACTGCAAGAATCgtaattgtaccccagtatctattgatggctttggttaacaagttctatgg Alignment from GeneWise CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG ttatttgggaactcaactgatctacctgtaacaattctcattcttctcagCCATTCCCTTGTGTTATAGATGAGGAGTGTGGTTCTGATAAACATAGTCCCAGTCCCAGCTGTGGAGCGGCTGTTGAT---------CAGATCTGCTTGGCTTGCCGAAGACACAGAAAGTGTTGTGTAAGGCATGCCATGTGTTGCCCTGAGAACCACTGCAAGAATCgtaattgtaccccagtatctattgatggctttggttaacaagttctatgg #### Dnajc4_ID1965_3 --> 0 - 2 Original Alignment CTACACCCTGATCGAGACCCTGGGAACCCAGCCCTGCATAGCCGCTTTGTGGAGCTGAATGAGGCATATCGAGTGCTCAGTCGTGAGGAAAGTCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCAAAGTCTTCAGGGAGCACAGCCGAGCCTAAGTATACGCAACAGACACACag aactgactgggcagtacttgagtcatataaaccagtgcccttatgactagCTACGCCCTGATCGAGATCTGGGTAATCCGGCCCTACATAGCCGATTTGTGGAACTGAATGAG------CGTGTACTCAGCCATGAGGAAAGCCGTCGTAACTATGACCGTCAGCTGCATCCAGCC---------------TCTGGCAGCACTGCTGAGCCTAAGTATACACAGCACACCCACaggtgagatacagatggcacaacttgagtttgttctccctatctacttactc Alignment from CESAR CTACACCCTGATCGAGACCCTGGGAACCCAGCCCTGCATAGCCGCTTTGTGGAGCTGAATGAGGCATATCGAGTGCTCAGTCGTGAGGAAAGTCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCAAAGTCTTCAGGGAGCACAGCCGAGCCTAAGTATACGCAACAGACACACag aactgactgggcagtacttgagtcatataaaccagtgcccttatgactagCTACGCCCTGATCGAGATCTGGGTAATCCGGCCCTACATAGCCGATTTGTGGAACTGAATGAG------CGTGTACTCAGCCATGAGGAAAGCCGTCGTAACTATGACCGTCAGCTGCATCCAGCC---------------TCTGGCAGCACTGCTGAGCCTAAGTATACACAGCACACCCACaggtgagatacagatggcacaacttgagtttgttctccctatctacttactc Alignment from Spaln_aa2Genome CTACACCCTGATCGAGACCCTGGGAACCCAGCCCTGCATAGCCGCTTTGTGGAGCTGAATGAGGCATATCGAGTGCTCAGTCGTGAGGAAAGTCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCAAAGTCTTCAGGGAGCACAGCCGAGCCTAAGTATACGCAACAGACACACAG aactgactgggcagtacttgagtcatataaaccagtgcccttatgactagCTACGCCCTGATCGAGATCTGGGTAATCCGGCCCTACATAGCCGATTTGTGGAACTGAATGAG------CGTGTACTCAGCCATGAGGAAAGCCGTCGTAACTATGACCGTCAGCTGCATCCAGCC---------------TCTGGCAGCACTGCTGAGCCTAAGTATACACAGCACACCCACAGgtgagatacagatggcacaacttgagtttgttctccctatctacttactc Alignment from Spaln_nt2Genome CTACACCCTGATCGAGACCCTGGGAACCCAGCCCTGCATAGCCGCTTTGTGGAGCTGAATGAGGCATATCGAGTGCTCAGTCGTGAGGAAAGTCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCAAAGTCTTCAGGGAGCACAGCCGAGCCTAAGTATACGCAACAGACACACAG aactgactgggcagtacttgagtcatataaaccagtgcccttatgactagCTACGCCCTGATCGAGATCTGGGTAATCCGGCCCTACATAGCCGATTTGTGGAACTGAATGAG------CGTGTACTCAGCCATGAGGAAAGCCGTCGTAACTATGACCGTCAGCTGCATCCAGCC---------------TCTGGCAGCACTGCTGAGCCTAAGTATACACAGCACACCCACAGgtgagatacagatggcacaacttgagtttgttctccctatctacttactc Alignment from Pairagon CTACACCCTGATCGAGACCCTGGGAACCCAGCCCTGCATAGCCGCTTTGTGGAGCTGAATGAGGCATATCGAGTGCTCAGTCGTGAGGAAAGTCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCAAAGTCTTCAGGGAGCACAGCCGAGCCTAAGTATACGCAACAGACACACAG aactgactgggcagtacttgagtcatataaaccagtgcccttatgactagCTACGCCCTGATCGAGATCTGGGTAATCCGGCCCTACATAGCCGATTTGTGGAACTGAATGAG------CGTGTACTCAGCCATGAGGAAAGCCGTCGTAACTATGACCGTCAGCTGCATCCAGCC---------------TCTGGCAGCACTGCTGAGCCTAAGTATACACAGCACACCCACAGgtgagatacagatggcacaacttgagtttgttctccctatctacttactc Alignment from Exonerate_protein2genome CTACACCCTGATCGAGACCCTGGGAACCCAGCCCTGCATAGCCGCTTTGTGGAGCTGAATGAGGCATATCGAGTGCTCAGTCGTGAGGAAAGTCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCAAAGTCTTCAGGGAGCACAGCCGAGCCTAAGTATACGCAACAGACACACAG aactgactgggcagtacttgagtcatataaaccagtgcccttatgactagCTACGCCCTGATCGAGATCTGGGTAATCCGGCCCTACATAGCCGATTTGTGGAACTGAATGAG------CGTGTACTCAGCCATGAGGAAAGCCGTCGTAACTATGACCGTCAGCTGCATCCAGCC---------------TCTGGCAGCACTGCTGAGCCTAAGTATACACAGCACACCCACAGgtgagatacagatggcacaacttgagtttgttctccctatctacttactc Alignment from Exonerate_coding2genome CTACACCCTGATCGAGACCCTGGGAACCCAGCCCTGCATAGCCGCTTTGTGGAGCTGAATGAGGCATATCGAGTGCTCAGTCGTGAGGAAAGTCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCAAAGTCTTCAGGGAGCACAGCCGAGCCTAAGTATACGCAACAGACACACAG aactgactgggcagtacttgagtcatataaaccagtgcccttatgactagCTACGCCCTGATCGAGATCTGGGTAATCCGGCCCTACATAGCCGATTTGTGGAACTGAATGAG------CGTGTACTCAGCCATGAGGAAAGCCGTCGTAACTATGACCGTCAGCTGCATCCAGCC---------------TCTGGCAGCACTGCTGAGCCTAAGTATACACAGCACACCCACAGgtgagatacagatggcacaacttgagtttgttctccctatctacttactc Alignment from GeneWise CTACACCCTGATCGAGACCCTGGGAACCCAGCCCTGCATAGCCGCTTTGTGGAGCTGAATGAGGCATATCGAGTGCTCAGTCGTGAGGAAAGTCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCAAAGTCTTCAGGGAGCACAGCCGAGCCTAAGTATACGCAACAGACACACAG aactgactgggcagtacttgagtcatataaaccagtgcccttatgactagCTACGCCCTGATCGAGATCTGGGTAATCCGGCCCTACATAGCCGATTTGTGGAACTGAATGAG------CGTGTACTCAGCCATGAGGAAAGCCGTCGTAACTATGACCGTCAGCTGCATCCAGCCTCT---------------GGCAGCACTGCTGAGCCTAAGTATACACAGCACACCCACAGgtgagatacagatggcacaacttgagtttgttctccctatctacttactc #### Dnmbp_ID8852_14 --> 2 - 0 Original Alignment tcACCAAAGGCTTTGTCTACAGCTCCTTCCTGAAGCCTTACAATCCTCGCTGCAGCCATTCGGATGCCTCCGTGGCCAGCCACTCCTCCACGGAGTCAGAGCACAGTGGCTCCTCC---------------------------CCCGGGTGCCATCGACAGAACAGCCACAGTGCCTTGACCTTCAACTCCAACAACATGACTGTGTCCTTCACCTCAGGACTTGCCCTAACGCAGCCTCAGGATGCATCTCCACTGAAGGACTGTGCCCACGAAACTCTCGCTGTGTCCTGGAACACAGGGCATCCAGAGACTGGACCTTCCACGTGCTCTTCCGACCCAGGCTTTTCCTGCCAGCGCAGGCTGGGGAACCCTGCAGATGGTGCCAGAGACATCAGCCAACCTGCTTCAACCTTGAGGGGCTGCCAGCGAGGCTCCCCGCATTCAGAAGTGGTCGGTTACTCTGTGCCAGGGCAAAATGACCAAGGCAGTGACTCTATAAAAGGCTCTGCAAGAGTCTGTCAGGCTCCAGAAGACAGAGACAGAGGGGTCGGGAGCAGCGAGACAGAGGGCAACCAG ccaatggctcacaattcaaactcaatttagtaatgttttttctttttcagttGCCAGAGGCTTTCTGTACACTTCCTTCCTAAAGCCATACAAGCCTCATTGCACGCATTTAGATGCTGCTGTAGCGTGTCACTCATCTATGGAGTCGGAGCATGCAGGGTCTTCCCCAGGGTGCCAACGACAGAACAGTCACCCTGGATGTCACCAACAAAAT------AGTGCTTCCACATTCAACTCAAATAACATGTCGGTATCTTTCACCTCAGGCCTTGCTCTTATCCAGCCTCTGGATACCTCTCCGTTAAAGGACTGTGCCCATGAGACACTCACTGTATCCTGGAACATGGGTCACCCAAAGACTGGCCCTTCCACATGCTCCTCGGATCCTGGGTTG---TGCCAATGCAGGCTGGGGAACCCTGCAGATGGTGTCAGAGACATCAGCCAGCCTGCCTCAACTTTAAGGGGCTGTGAA---GGCTCA---CACTCAGAAGTCATCAGTTACTCTGTGTTAGGTCAGAATGATCAGGGCACAGATGCAATAAAAGGCTCAGCTATAGTTTGCCAAGCACCAGAACACAGAGAAAGAGAGGTTGTT---GGTGAGACTGACGGCAACCAAgtaagattaaaggacggtggcaggatatggagccatcctttgtggtgcca Alignment from CESAR tcACCAAAGGCTTTGTCTACAGCTCCTTCCTGAAGCCTTACAATCCTCGCTGCAGCCATTCGGATGCCTCCGTGGCCAGCCACTCCTCCACGGAGTCAGAGCACAGTGGCTCCTCCCCCGGGTGCCATCGACAGAACAGCCAC---------------------AGTGCCTTGACCTTCAACTCCAACAACATGACTGTGTCCTTCACCTCAGGACTTGCCCTAACGCAGCCTCAGGATGCATCTCCACTGAAGGACTGTGCCCACGAAACTCTCGCTGTGTCCTGGAACACAGGGCATCCAGAGACTGGACCTTCCACGTGCTCTTCCGACCCAGGCTTTTCCTGCCAGCGCAGGCTGGGGAACCCTGCAGATGGTGCCAGAGACATCAGCCAACCTGCTTCAACCTTGAGGGGCTGCCAGCGAGGCTCCCCGCATTCAGAAGTGGTCGGTTACTCTGTGCCAGGGCAAAATGACCAAGGCAGTGACTCTATAAAAGGCTCTGCAAGAGTCTGTCAGGCTCCAGAAGACAGAGACAGAGGGGTCGGGAGCAGCGAGACAGAGGGCAACCAG ccaatggctcacaattcaaactcaatttagtaatgttttttctttttcagttGCCAGAGGCTTTCTGTACACTTCCTTCCTAAAGCCATACAAGCCTCATTGCACGCATTTAGATGCTGCTGTAGCGTGTCACTCATCTATGGAGTCGGAGCATGCAGGGTCTTCCCCAGGGTGCCAACGACAGAACAGTCACCCTGGATGTCACCAACAAAATAGTGCTTCCACATTCAACTCAAATAACATGTCGGTATCTTTCACCTCAGGCCTTGCTCTTATCCAGCCTCTGGATACCTCTCCGTTAAAGGACTGTGCCCATGAGACACTCACTGTATCCTGGAACATGGGTCACCCAAAGACTGGCCCTTCCACATGCTCCTCGGATCCTGGGTTG---TGCCAATGCAGGCTGGGGAACCCTGCAGATGGTGTCAGAGACATCAGCCAGCCTGCCTCAACTTTAAGGGGCTGTGAA---GGCTCA---CACTCAGAAGTCATCAGTTACTCTGTGTTAGGTCAGAATGATCAGGGCACAGATGCAATAAAAGGCTCAGCTATAGTTTGCCAAGCACCAGAACACAGAGAAAGAGAGGTT---GTTGGTGAGACTGACGGCAACCAAgtaagattaaaggacggtggcaggatatggagccatcctttgtggtgcca Alignment from Spaln_aa2Genome TCACCAAAGGCTTTGTCTACAGCTCCTTCCTGAAGCCTTACAATCCTCGCTGCAGCCATTCGGATGCCTCCGTGGCCAGCCACTCCTCCACGGAGTCAGAGCACAGTGGCTCCTCCCCCGGGTGCCATCGACAGAACAGCCAC---------------------AGTGCCTTGACCTTCAACTCCAACAACATGACTGTGTCCTTCACCTCAGGACTTGCCCTAACGCAGCCTCAGGATGCATCTCCACTGAAGGACTGTGCCCACGAAACTCTCGCTGTGTCCTGGAACACAGGGCATCCAGAGACTGGACCTTCCACGTGCTCTTCCGACCCAGGCTTTTCCTGCCAGCGCAGGCTGGGGAACCCTGCAGATGGTGCCAGAGACATCAGCCAACCTGCTTCAACCTTGAGGGGCTGCCAGCGAGGCTCCCCGCATTCAGAAGTGGTCGGTTACTCTGTGCCAGGGCAAAATGACCAAGGCAGTGACTCTATAAAAGGCTCTGCAAGAGTCTGTCAGGCTCCAGAAGACAGAGACAGAGGGGTCGGGAGCAGCGAGACAGAGGGCAACCAG ccaatggctcacaattcaaactcaatttagtaatgttttttctttttcagTTGCCAGAGGCTTTCTGTACACTTCCTTCCTAAAGCCATACAAGCCTCATTGCACGCATTTAGATGCTGCTGTAGCGTGTCACTCATCTATGGAGTCGGAGCATGCAGGGTCTTCCCCAGGGTGCCAACGACAGAACAGTCACCCTGGATGTCACCAACAAAATAGTGCTTCCACATTCAACTCAAATAACATGTCGGTATCTTTCACCTCAGGCCTTGCTCTTATCCAGCCTCTGGATACCTCTCCGTTAAAGGACTGTGCCCATGAGACACTCACTGTATCCTGGAACATGGGTCACCCAAAGACTGGCCCTTCCACATGCTCCTCGGATCCTGGGTTG---TGCCAATGCAGGCTGGGGAACCCTGCAGATGGTGTCAGAGACATCAGCCAGCCTGCCTCAACTTTAAGGGGCTGTGAA------GGCTCACACTCAGAAGTCATCAGTTACTCTGTGTTAGGTCAGAATGATCAGGGCACAGATGCAATAAAAGGCTCAGCTATAGTTTGCCAAGCACCAGAACACAGAGAAAGAGAGGTT---GTTGGTGAGACTGACGGCAACCAAgtaagattaaaggacggtggcaggatatggagccatcctttgtggtgcca Alignment from Spaln_nt2Genome TCACCAAAGGCTTTGTCTACAGCTCCTTCCTGAAGCCTTACAATCCTCGCTGCAGCCATTCGGATGCCTCCGTGGCCAGCCACTCCTCCACGGAGTCAGAGCACAGTGGCTCCTCCCCCGGGTGCCATCGACAGAACAGCCAC---------------------AGTGCCTTGACCTTCAACTCCAACAACATGACTGTGTCCTTCACCTCAGGACTTGCCCTAACGCAGCCTCAGGATGCATCTCCACTGAAGGACTGTGCCCACGAAACTCTCGCTGTGTCCTGGAACACAGGGCATCCAGAGACTGGACCTTCCACGTGCTCTTCCGACCCAGGCTTTTCCTGCCAGCGCAGGCTGGGGAACCCTGCAGATGGTGCCAGAGACATCAGCCAACCTGCTTCAACCTTGAGGGGCTGCCAGCGAGGCTCCCCGCATTCAGAAGTGGTCGGTTACTCTGTGCCAGGGCAAAATGACCAAGGCAGTGACTCTATAAAAGGCTCTGCAAGAGTCTGTCAGGCTCCAGAAGACAGAGACAGAGGGGTCGGGAGCAGCGAGACAGAGGGCAACCAG ccaatggctcacaattcaaactcaatttagtaatgttttttctttttcagTTGCCAGAGGCTTTCTGTACACTTCCTTCCTAAAGCCATACAAGCCTCATTGCACGCATTTAGATGCTGCTGTAGCGTGTCACTCATCTATGGAGTCGGAGCATGCAGGGTCTTCCCCAGGGTGCCAACGACAGAACAGTCACCCTGGATGTCACCAACAAAATAGTGCTTCCACATTCAACTCAAATAACATGTCGGTATCTTTCACCTCAGGCCTTGCTCTTATCCAGCCTCTGGATACCTCTCCGTTAAAGGACTGTGCCCATGAGACACTCACTGTATCCTGGAACATGGGTCACCCAAAGACTGGCCCTTCCACATGCTCCTCGGATCCTGGGTT---GTGCCAATGCAGGCTGGGGAACCCTGCAGATGGTGTCAGAGACATCAGCCAGCCTGCCTCAACTTTAAGGGGCTGTGA---AGGCT---CACACTCAGAAGTCATCAGTTACTCTGTGTTAGGTCAGAATGATCAGGGCACAGATGCAATAAAAGGCTCAGCTATAGTTTGCCAAGCACCAGAACACAGAGAAAGAGAGGTTG---TTGGTGAGACTGACGGCAACCAAgtaagattaaaggacggtggcaggatatggagccatcctttgtggtgcca Alignment from Pairagon TCACCAAAGGCTTTGTCTACAGCTCCTTCCTGAAGCCTTACAATCCTCGCTGCAGCCATTCGGATGCCTCCGTGGCCAGCCACTCCTCCACGGAGTCAGAGCACAGTGGCTCCTCCCCCGGGTGCCATCGACAGAACAGCCAC---------------------AGTGCCTTGACCTTCAACTCCAACAACATGACTGTGTCCTTCACCTCAGGACTTGCCCTAACGCAGCCTCAGGATGCATCTCCACTGAAGGACTGTGCCCACGAAACTCTCGCTGTGTCCTGGAACACAGGGCATCCAGAGACTGGACCTTCCACGTGCTCTTCCGACCCAGGCTTTTCCTGCCAGCGCAGGCTGGGGAACCCTGCAGATGGTGCCAGAGACATCAGCCAACCTGCTTCAACCTTGAGGGGCTGCCAGCGAGGCTCCCCGCATTCAGAAGTGGTCGGTTACTCTGTGCCAGGGCAAAATGACCAAGGCAGTGACTCTATAAAAGGCTCTGCAAGAGTCTGTCAGGCTCCAGAAGACAGAGACAGAGGGGTCGGGAGCAGCGAGACAGAGGGCAACCAG ccaatggctcacaattcaaactcaatttagtaatgttttttctttttcagTTGCCAGAGGCTTTCTGTACACTTCCTTCCTAAAGCCATACAAGCCTCATTGCACGCATTTAGATGCTGCTGTAGCGTGTCACTCATCTATGGAGTCGGAGCATGCAGGGTCTTCCCCAGGGTGCCAACGACAGAACAGTCACCCTGGATGTCACCAACAAAATAGTGCTTCCACATTCAACTCAAATAACATGTCGGTATCTTTCACCTCAGGCCTTGCTCTTATCCAGCCTCTGGATACCTCTCCGTTAAAGGACTGTGCCCATGAGACACTCACTGTATCCTGGAACATGGGTCACCCAAAGACTGGCCCTTCCACATGCTCCTCGGATCCTGGGTT---GTGCCAATGCAGGCTGGGGAACCCTGCAGATGGTGTCAGAGACATCAGCCAGCCTGCCTCAACTTTAAGGGGCTGTGA---AGGCT---CACACTCAGAAGTCATCAGTTACTCTGTGTTAGGTCAGAATGATCAGGGCACAGATGCAATAAAAGGCTCAGCTATAGTTTGCCAAGCACCAGAACACAGAGAAAGAGAGGTTG---TTGGTGAGACTGACGGCAACCAAgtaagattaaaggacggtggcaggatatggagccatcctttgtggtgcca Alignment from Exonerate_protein2genome ccaatggctcacaattcaaactcaatttagtaatgttttttctttttcagttgccagaggctttctgtacacttccttcctaaagccatacaagcctcattgcacgcatttagatgctgctgtagcgtgtcactcatctatggagtcggagcatgcagggtcttccccagggtgccaacgacagaacagtcaccctggatgtcaccaacaaaatagtgcttccacattcaactcaaataacatgtcggtatctttcacctcaggccttgctcttatccagcctctggatacctctccgttaaaggactgtgcccatgagacactcactgtatcctggaacatgggtcacccaaagactggcccttccacatgctcctcggatcctgggttgtgccaatgcaggctggggaaccctgcagatggtgtcagagacatcagccagcctgcctcaactttaaggggctgtgaaggctcacactcagaagtcatcagttactctgtgttaggtcagaatgatcagggcacagatgcaataaaaggctcagctatagtttgccaagcaccagaacacagagaaagagaggttgttggtgagactgacggcaaccaagtaagattaaaggacggtggcaggatatggagccatcctttgtggtgcca Alignment from Exonerate_coding2genome ccaatggctcacaattcaaactcaatttagtaatgttttttctttttcagttgccagaggctttctgtacacttccttcctaaagccatacaagcctcattgcacgcatttagatgctgctgtagcgtgtcactcatctatggagtcggagcatgcagggtcttccccagggtgccaacgacagaacagtcaccctggatgtcaccaacaaaatagtgcttccacattcaactcaaataacatgtcggtatctttcacctcaggccttgctcttatccagcctctggatacctctccgttaaaggactgtgcccatgagacactcactgtatcctggaacatgggtcacccaaagactggcccttccacatgctcctcggatcctgggttgtgccaatgcaggctggggaaccctgcagatggtgtcagagacatcagccagcctgcctcaactttaaggggctgtgaaggctcacactcagaagtcatcagttactctgtgttaggtcagaatgatcagggcacagatgcaataaaaggctcagctatagtttgccaagcaccagaacacagagaaagagaggttgttggtgagactgacggcaaccaagtaagattaaaggacggtggcaggatatggagccatcctttgtggtgcca Alignment from GeneWise -------------------GTCACCAAAGGCTTTGTCTACAGCTCCTTCCTGAAGCCTTACAATCCTCGCTGCAGCCATTCGGATGCCTCCGTGGCCAGCCACTCCTCCACGGAGTCAGAGCACAGTGGCTCCTCCCCCGGGTGCCATCGACAGAACAGCCAC---------------------AGTGCCTTGACCTTCAACTCCAACAACATGACTGTGTCCTTCACCTCAGGACTTGCCCTAACGCAGCCTCAGGATGCATCTCCACTGAAGGACTGTGCCCACGAAACTCTCGCTGTGTCCTGGAACACAGGGCATCCAGAGACTGGACCTTCCACGTGCTCTTCCGACCCAGGCTTTTCCTGCCAGCGCAGGCTGGGGAACCCTGCAGATGGTGCCAGAGACATCAGCCAACCTGCTTCAACCTTGAGGGGCTGCCAGCGAGGCTCCCCGCATTCAGAAGTGGTCGGTTACTCTGTGCCAGGGCAAAATGACCAAGGCAGTGACTCTATAAAAGGCTCTGCAAGAGTCTGTCAGGCTCCAGAAGACAGAGACAGAGGGGTCGGGAGCAGCGAGACAGAGGGCAACCAG ccaatggctcacaattcaaactcaatttagTAATGTTTTTTCTTTTTCAGTTGCCAGAGGCTTTCTGTACACTTCCTTCCTAAAGCCATACAAGCCTCATTGCACGCATTTAGATGCTGCTGTAGCGTGTCACTCATCTATGGAGTCGGAGCATGCAGGGTCTTCCCCAGGGTGCCAACGACAGAACAGTCACCCTGGATGTCACCAACAAAATAGTGCTTCCACATTCAACTCAAATAACATGTCGGTATCTTTCACCTCAGGCCTTGCTCTTATCCAGCCTCTGGATACCTCTCCGTTAAAGGACTGTGCCCATGAGACACTCACTGTATCCTGGAACATGGGTCACCCAAAGACTGGCCCTTCCACATGCTCCTCGGATCCTGGGTTG---TGCCAATGCAGGCTGGGGAACCCTGCAGATGGTGTCAGAGACATCAGCCAGCCTGCCTCAACTTTAAGGGGCTGTGAA---GGCTCA---CACTCAGAAGTCATCAGTTACTCTGTGTTAGGTCAGAATGATCAGGGCACAGATGCAATAAAAGGCTCAGCTATAGTTTGCCAAGCACCAGAACACAGAGAAAGAGAGGTT---GTTGGTGAGACTGACGGCAACCAAgtaagattaaaggacggtggcaggatatggagccatcctttgtggtgcca #### Dnmbp_ID8860_6 --> 2 - 2 Original Alignment gaCCCGTGTTTCTTGACCACCGAGACGAGCTTGAGGGAACGTACAGGGTTTACTGCCAGAACCACGATGAAGCCATCTCCCTGCTGGAAATGTATGAGAAGGACGAGAAGACCCAGAAGCACCTTCAGGACTACCTGGCAGATCTCaa ggaccatggtccagacacaatatgcagactattgttttccatgcttaaagggCCAGTGTTTCTTGACCACAGAGATGAACTAGAGGGAACATACAAGGTCTACTGTCAGAACCATGAGGAAGCTATCTCCTTGCTAGAAATGTATGAGAAGGATGAGAAGACTCCAAGGCACTTGCAGGACTACTTGGCAGATATCaagtaacttgagtgactaaaacaatatgagaccaaggcctaataagaataga Alignment from CESAR gaCCCGTGTTTCTTGACCACCGAGACGAGCTTGAGGGAACGTACAGGGTTTACTGCCAGAACCACGATGAAGCCATCTCCCTGCTGGAAATGTATGAGAAGGACGAGAAGACCCAGAAGCACCTTCAGGACTACCTGGCAGATCTCaa ggaccatggtccagacacaatatgcagactattgttttccatgcttaaagggCCAGTGTTTCTTGACCACAGAGATGAACTAGAGGGAACATACAAGGTCTACTGTCAGAACCATGAGGAAGCTATCTCCTTGCTAGAAATGTATGAGAAGGATGAGAAGACTCCAAGGCACTTGCAGGACTACTTGGCAGATATCaagtaacttgagtgactaaaacaatatgagaccaaggcctaataagaataga Alignment from Spaln_aa2Genome GACCCGTGTTTCTTGACCACCGAGACGAGCTTGAGGGAACGTACAGGGTTTACTGCCAGAACCACGATGAAGCCATCTCCCTGCTGGAAATGTATGAGAAGGACGAGAAGACCCAGAAGCACCTTCAGGACTACCTGGCAGATCTCAA ggaccatggtccagacacaatatgcagactattgttttccatgcttaaagGGCCAGTGTTTCTTGACCACAGAGATGAACTAGAGGGAACATACAAGGTCTACTGTCAGAACCATGAGGAAGCTATCTCCTTGCTAGAAATGTATGAGAAGGATGAGAAGACTCCAAGGCACTTGCAGGACTACTTGGCAGATATCAAgtaacttgagtgactaaaacaatatgagaccaaggcctaataagaataga Alignment from Spaln_nt2Genome GACCCGTGTTTCTTGACCACCGAGACGAGCTTGAGGGAACGTACAGGGTTTACTGCCAGAACCACGATGAAGCCATCTCCCTGCTGGAAATGTATGAGAAGGACGAGAAGACCCAGAAGCACCTTCAGGACTACCTGGCAGATCTCAA ggaccatggtccagacacaatatgcagactattgttttccatgcttaaagGGCCAGTGTTTCTTGACCACAGAGATGAACTAGAGGGAACATACAAGGTCTACTGTCAGAACCATGAGGAAGCTATCTCCTTGCTAGAAATGTATGAGAAGGATGAGAAGACTCCAAGGCACTTGCAGGACTACTTGGCAGATATCAAgtaacttgagtgactaaaacaatatgagaccaaggcctaataagaataga Alignment from Pairagon GACCCGTGTTTCTTGACCACCGAGACGAGCTTGAGGGAACGTACAGGGTTTACTGCCAGAACCACGATGAAGCCATCTCCCTGCTGGAAATGTATGAGAAGGACGAGAAGACCCAGAAGCACCTTCAGGACTACCTGGCAGATCTCAA ggaccatggtccagacacaatatgcagactattgttttccatgcttaaagGGCCAGTGTTTCTTGACCACAGAGATGAACTAGAGGGAACATACAAGGTCTACTGTCAGAACCATGAGGAAGCTATCTCCTTGCTAGAAATGTATGAGAAGGATGAGAAGACTCCAAGGCACTTGCAGGACTACTTGGCAGATATCAAgtaacttgagtgactaaaacaatatgagaccaaggcctaataagaataga Alignment from Exonerate_protein2genome GACCCGTGTTTCTTGACCACCGAGACGAGCTTGAGGGAACGTACAGGGTTTACTGCCAGAACCACGATGAAGCCATCTCCCTGCTGGAAATGTATGAGAAGGACGAGAAGACCCAGAAGCACCTTCAGGACTACCTGGCAGATCTCAA ggaccatggtccagacacaatatgcagactattgttttccatgcttaaagGGCCAGTGTTTCTTGACCACAGAGATGAACTAGAGGGAACATACAAGGTCTACTGTCAGAACCATGAGGAAGCTATCTCCTTGCTAGAAATGTATGAGAAGGATGAGAAGACTCCAAGGCACTTGCAGGACTACTTGGCAGATATCAAgtaacttgagtgactaaaacaatatgagaccaaggcctaataagaataga Alignment from Exonerate_coding2genome GACCCGTGTTTCTTGACCACCGAGACGAGCTTGAGGGAACGTACAGGGTTTACTGCCAGAACCACGATGAAGCCATCTCCCTGCTGGAAATGTATGAGAAGGACGAGAAGACCCAGAAGCACCTTCAGGACTACCTGGCAGATCTCAA ggaccatggtccagacacaatatgcagactattgttttccatgcttaaagGGCCAGTGTTTCTTGACCACAGAGATGAACTAGAGGGAACATACAAGGTCTACTGTCAGAACCATGAGGAAGCTATCTCCTTGCTAGAAATGTATGAGAAGGATGAGAAGACTCCAAGGCACTTGCAGGACTACTTGGCAGATATCAAgtaacttgagtgactaaaacaatatgagaccaaggcctaataagaataga Alignment from GeneWise GACCCGTGTTTCTTGACCACCGAGACGAGCTTGAGGGAACGTACAGGGTTTACTGCCAGAACCACGATGAAGCCATCTCCCTGCTGGAAATGTATGAGAAGGACGAGAAGACCCAGAAGCACCTTCAGGACTACCTGGCAGATCTCAA ggaccatggtccagacacaatatgcagactattgttttccatgcttaaagGGCCAGTGTTTCTTGACCACAGAGATGAACTAGAGGGAACATACAAGGTCTACTGTCAGAACCATGAGGAAGCTATCTCCTTGCTAGAAATGTATGAGAAGGATGAGAAGACTCCAAGGCACTTGCAGGACTACTTGGCAGATATCAAgtaacttgagtgactaaaacaatatgagaccaaggcctaataagaataga #### Dnmbp_ID8862_4 --> 2 - 0 Original Alignment acATGACGCTCCTCTCTTCCCAGTCTTCATCCCTGGCGGCCCCCTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGCTGGAGAAGAGAGCCAAGGTGGTGGCGGAGCTTTTGCAGACGGAGAGAGACTACATCCGGGATCTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAGGCACAG gattctctcttgattggtatcagcactcaacttgcatttgttcccttaagacATGATGCTCCTCATTTCCCAGTCTACATCCTTGGCAGCCCCTTTTGGGTCTGTCTCTATTGAGAACCCAGAGCAAAGGATGTTGGAAAAGAGGGCCAAAGTGATAGCTGAACTATTGCAGATGGAGAGAGACTACTTCCGGGATTTGGAGATGTGTATTGAGCAAGTCATGGTACCCTTACAACAAACACAGgtaagggtcatgaagtggcaaaaggatcttcagccaccaatatatggaag Alignment from CESAR acATGACGCTCCTCTCTTCCCAGTCTTCATCCCTGGCGGCCCCCTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGCTGGAGAAGAGAGCCAAGGTGGTGGCGGAGCTTTTGCAGACGGAGAGAGACTACATCCGGGATCTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAGGCACAG gattctctcttgattggtatcagcactcaacttgcatttgttcccttaagacATGATGCTCCTCATTTCCCAGTCTACATCCTTGGCAGCCCCTTTTGGGTCTGTCTCTATTGAGAACCCAGAGCAAAGGATGTTGGAAAAGAGGGCCAAAGTGATAGCTGAACTATTGCAGATGGAGAGAGACTACTTCCGGGATTTGGAGATGTGTATTGAGCAAGTCATGGTACCCTTACAACAAACACAGgtaagggtcatgaagtggcaaaaggatcttcagccaccaatatatggaag Alignment from Spaln_aa2Genome ACATGACGCTCCTCTCTTCCCAGTCTTCATCCCTGGCGGCCCCCTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGCTGGAGAAGAGAGCCAAGGTGGTGGCGGAGCTTTTGCAGACGGAGAGAGACTACATCCGGGATCTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAGGCACAG gattctctcttgattggtatcagcactcaacttgcatttgttcccttaagACATGATGCTCCTCATTTCCCAGTCTACATCCTTGGCAGCCCCTTTTGGGTCTGTCTCTATTGAGAACCCAGAGCAAAGGATGTTGGAAAAGAGGGCCAAAGTGATAGCTGAACTATTGCAGATGGAGAGAGACTACTTCCGGGATTTGGAGATGTGTATTGAGCAAGTCATGGTACCCTTACAACAAACACAGgtaagggtcatgaagtggcaaaaggatcttcagccaccaatatatggaag Alignment from Spaln_nt2Genome ACATGACGCTCCTCTCTTCCCAGTCTTCATCCCTGGCGGCCCCCTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGCTGGAGAAGAGAGCCAAGGTGGTGGCGGAGCTTTTGCAGACGGAGAGAGACTACATCCGGGATCTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAGGCACAG gattctctcttgattggtatcagcactcaacttgcatttgttcccttaagACATGATGCTCCTCATTTCCCAGTCTACATCCTTGGCAGCCCCTTTTGGGTCTGTCTCTATTGAGAACCCAGAGCAAAGGATGTTGGAAAAGAGGGCCAAAGTGATAGCTGAACTATTGCAGATGGAGAGAGACTACTTCCGGGATTTGGAGATGTGTATTGAGCAAGTCATGGTACCCTTACAACAAACACAGgtaagggtcatgaagtggcaaaaggatcttcagccaccaatatatggaag Alignment from Pairagon ACATGACGCTCCTCTCTTCCCAGTCTTCATCCCTGGCGGCCCCCTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGCTGGAGAAGAGAGCCAAGGTGGTGGCGGAGCTTTTGCAGACGGAGAGAGACTACATCCGGGATCTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAGGCACAG gattctctcttgattggtatcagcactcaacttgcatttgttcccttaagACATGATGCTCCTCATTTCCCAGTCTACATCCTTGGCAGCCCCTTTTGGGTCTGTCTCTATTGAGAACCCAGAGCAAAGGATGTTGGAAAAGAGGGCCAAAGTGATAGCTGAACTATTGCAGATGGAGAGAGACTACTTCCGGGATTTGGAGATGTGTATTGAGCAAGTCATGGTACCCTTACAACAAACACAGgtaagggtcatgaagtggcaaaaggatcttcagccaccaatatatggaag Alignment from Exonerate_protein2genome ACATGACGCTCCTCTCTTCCCAGTCTTCATCCCTGGCGGCCCCCTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGCTGGAGAAGAGAGCCAAGGTGGTGGCGGAGCTTTTGCAGACGGAGAGAGACTACATCCGGGATCTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAGGCACAG gattctctcttgattggtatcagcactcaacttgcatttgttcccttaagACATGATGCTCCTCATTTCCCAGTCTACATCCTTGGCAGCCCCTTTTGGGTCTGTCTCTATTGAGAACCCAGAGCAAAGGATGTTGGAAAAGAGGGCCAAAGTGATAGCTGAACTATTGCAGATGGAGAGAGACTACTTCCGGGATTTGGAGATGTGTATTGAGCAAGTCATGGTACCCTTACAACAAACACAGgtaagggtcatgaagtggcaaaaggatcttcagccaccaatatatggaag Alignment from Exonerate_coding2genome ACATGACGCTCCTCTCTTCCCAGTCTTCATCCCTGGCGGCCCCCTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGCTGGAGAAGAGAGCCAAGGTGGTGGCGGAGCTTTTGCAGACGGAGAGAGACTACATCCGGGATCTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAGGCACAG gattctctcttgattggtatcagcactcaacttgcatttgttcccttaagACATGATGCTCCTCATTTCCCAGTCTACATCCTTGGCAGCCCCTTTTGGGTCTGTCTCTATTGAGAACCCAGAGCAAAGGATGTTGGAAAAGAGGGCCAAAGTGATAGCTGAACTATTGCAGATGGAGAGAGACTACTTCCGGGATTTGGAGATGTGTATTGAGCAAGTCATGGTACCCTTACAACAAACACAGgtaagggtcatgaagtggcaaaaggatcttcagccaccaatatatggaag Alignment from GeneWise ACATGACGCTCCTCTCTTCCCAGTCTTCATCCCTGGCGGCCCCCTTTGGGTCTGTGTCCACTGAAAACCCAGAGCAGAGGATGCTGGAGAAGAGAGCCAAGGTGGTGGCGGAGCTTTTGCAGACGGAGAGAGACTACATCCGGGATCTGGAGATGTGCATTGAGAGGGTCATGGTGCCCCTGCAGCAGGCACAG gattctctcttgattggtatcagcactcaacttgcatttgttcccttaagACATGATGCTCCTCATTTCCCAGTCTACATCCTTGGCAGCCCCTTTTGGGTCTGTCTCTATTGAGAACCCAGAGCAAAGGATGTTGGAAAAGAGGGCCAAAGTGATAGCTGAACTATTGCAGATGGAGAGAGACTACTTCCGGGATTTGGAGATGTGTATTGAGCAAGTCATGGTACCCTTACAACAAACACAGgtaagggtcatgaagtggcaaaaggatcttcagccaccaatatatggaag #### Dntt_ID8077_3 --> 0 - 0 Original Alignment GTGAATAGAAACTCCTCCCCGAGTCCTGTCCCAGGCTCCCAGAATGTTCCAGCACCTGCTGTGAAGAAGATCTCCCAATATGCTTGCCAGCGAAGAACCACATTAAACAATTACAACCAACTATTCACG gttccacttgactaacttgttactagcaatttaaaatttttcctttgcagGTTAATAGAAATTCCTCACCAAGTCCTGTACCAGGCCCCCAGAATGTTCCAACACCTGCCGTGAAAAAGATCTCCCAGTATGCATGTCAGCAAAGGACTGCCCTAAACAACTACAATCAACTATCCACAgtgaggaggcaatctactggtcaaaaaggcctgaggtttttcctcctcaa Alignment from CESAR GTGAATAGAAACTCCTCCCCGAGTCCTGTCCCAGGCTCCCAGAATGTTCCAGCACCTGCTGTGAAGAAGATCTCCCAATATGCTTGCCAGCGAAGAACCACATTAAACAATTACAACCAACTATTCACG gttccacttgactaacttgttactagcaatttaaaatttttcctttgcagGTTAATAGAAATTCCTCACCAAGTCCTGTACCAGGCCCCCAGAATGTTCCAACACCTGCCGTGAAAAAGATCTCCCAGTATGCATGTCAGCAAAGGACTGCCCTAAACAACTACAATCAACTATCCACAgtgaggaggcaatctactggtcaaaaaggcctgaggtttttcctcctcaa Alignment from Spaln_aa2Genome GTGAATAGAAACTCCTCCCCGAGTCCTGTCCCAGGCTCCCAGAATGTTCCAGCACCTGCTGTGAAGAAGATCTCCCAATATGCTTGCCAGCGAAGAACCACATTAAACAATTACAACCAACTATTCACG gttccacttgactaacttgttactagcaatttaaaatttttcctttgcagGTTAATAGAAATTCCTCACCAAGTCCTGTACCAGGCCCCCAGAATGTTCCAACACCTGCCGTGAAAAAGATCTCCCAGTATGCATGTCAGCAAAGGACTGCCCTAAACAACTACAATCAACTATCCACAgtgaggaggcaatctactggtcaaaaaggcctgaggtttttcctcctcaa Alignment from Spaln_nt2Genome GTGAATAGAAACTCCTCCCCGAGTCCTGTCCCAGGCTCCCAGAATGTTCCAGCACCTGCTGTGAAGAAGATCTCCCAATATGCTTGCCAGCGAAGAACCACATTAAACAATTACAACCAACTATTCACG gttccacttgactaacttgttactagcaatttaaaatttttcctttgcagGTTAATAGAAATTCCTCACCAAGTCCTGTACCAGGCCCCCAGAATGTTCCAACACCTGCCGTGAAAAAGATCTCCCAGTATGCATGTCAGCAAAGGACTGCCCTAAACAACTACAATCAACTATCCACAgtgaggaggcaatctactggtcaaaaaggcctgaggtttttcctcctcaa Alignment from Pairagon GTGAATAGAAACTCCTCCCCGAGTCCTGTCCCAGGCTCCCAGAATGTTCCAGCACCTGCTGTGAAGAAGATCTCCCAATATGCTTGCCAGCGAAGAACCACATTAAACAATTACAACCAACTATTCACG gttccacttgactaacttgttactagcaatttaaaatttttcctttgcagGTTAATAGAAATTCCTCACCAAGTCCTGTACCAGGCCCCCAGAATGTTCCAACACCTGCCGTGAAAAAGATCTCCCAGTATGCATGTCAGCAAAGGACTGCCCTAAACAACTACAATCAACTATCCACAgtgaggaggcaatctactggtcaaaaaggcctgaggtttttcctcctcaa Alignment from Exonerate_protein2genome GAGATGATGGGGAGACATCAGCTTGTTGTGAATAGAAACTCCTCCCCGAGTCCTGTCCCAGGCTCCCAGAATGTTCCAGCACCTGCTGTGAAGAAGATCTCCCAATATGCTTGCCAGCGAAGAACCACATTAAACAATTACAACCAACTATTCACG gttccacttgactaacttgttactagcaaTTTAAAATTTTTCCTTTGCAGGTTAATAGAAATTCCTCACCAAGTCCTGTACCAGGCCCC------CAGAATGTTCCAACACCTGCCGTGAAAAAGATCTCCCAGTATGCATGTCAGCAAAGGACTGCCCTAAACAACTACAATCAACTATCCACAgtgaggaggcaatctactggtcaaaaaggcctgaggtttttcctcctcaa Alignment from Exonerate_coding2genome GAGATGATGGGGAGACATCAGCTTGTTGTGAATAGAAACTCCTCCCCGAGTCCTGTCCCAGGCTCCCAGAATGTTCCAGCACCTGCTGTGAAGAAGATCTCCCAATATGCTTGCCAGCGAAGAACCACATTAAACAATTACAACCAACTATTCACG gttccacttgactaacttgttactagcaaTTTAAAATTTTTCCTTTGCAGGTTAATAGAAATTCCTCACCAAGTCCTGTACCAGGCCCC------CAGAATGTTCCAACACCTGCCGTGAAAAAGATCTCCCAGTATGCATGTCAGCAAAGGACTGCCCTAAACAACTACAATCAACTATCCACAgtgaggaggcaatctactggtcaaaaaggcctgaggtttttcctcctcaa Alignment from GeneWise GTGAATAGAAACTCCTCCCCGAGTCCTGTCCCAGGCTCCCAGAATGTTCCAGCACCTGCTGTGAAGAAGATCTCCCAATATGCTTGCCAGCGAAGAACCACATTAAACAATTACAACCAACTATTCACG gttccacttgactaacttgttactagcaatttaaaatttttcctttgcagGTTAATAGAAATTCCTCACCAAGTCCTGTACCAGGCCCCCAGAATGTTCCAACACCTGCCGTGAAAAAGATCTCCCAGTATGCATGTCAGCAAAGGACTGCCCTAAACAACTACAATCAACTATCCACAgtgaggaggcaatctactggtcaaaaaggcctgaggtttttcctcctcaa #### Dntt_ID8080_6 --> 0 - 1 Original Alignment CTCTTTACCTCTGTGTTTGGTGTGGGACTGAAGACAGCTGAGAAATGGTTCAGGATGGGTTTCAGAACTCTCAGCAAAATACAATCAGACAAAAGCCTGAGGTTTACACAAATGCAGAAAGCAg tagctcttcacctgggtcctgctagtggtttttccttttgggatgggaagCTTTTCACCTGCGTTTTTAGTTTAGGACTTAAGACACTTAAGAGGTGGTTCAGGATGGGTTTGAAGGCCCTCAGCAGGATACAATCAGATAAAAGTTTAAGATCTACACAGTCGCAGAGAACAggtacacccttaatatatgatattgcttgtccagatgggcaagggaaatca Alignment from CESAR CTCTTTACCTCTGTGTTTGGTGTGGGACTGAAGACAGCTGAGAAATGGTTCAGGATGGGTTTCAGAACTCTCAGCAAAATACAATCAGACAAAAGCCTGAGGTTTACACAAATGCAGAAAGCAg tagctcttcacctgggtcctgctagtggtttttccttttgggatgggaagCTTTTCACCTGCGTTTTTAGTTTAGGACTTAAGACACTTAAGAGGTGGTTCAGGATGGGTTTGAAGGCCCTCAGCAGGATACAATCAGATAAAAGTTTAAGATCTACACAGTCGCAGAGAACAggtacacccttaatatatgatattgcttgtccagatgggcaagggaaatca Alignment from Spaln_aa2Genome CTCTTTACCTCTGTGTTTGGTGTGGGACTGAAGACAGCTGAGAAATGGTTCAGGATGGGTTTCAGAACTCTCAGCAAAATACAATCAGACAAAAGCCTGAGGTTTACACAAATGCAGAAAGCAG tagctcttcacctgggtcctgctagtggtttttccttttgggatgggaagCTTTTCACCTGCGTTTTTAGTTTAGGACTTAAGACACTTAAGAGGTGGTTCAGGATGGGTTTGAAGGCCCTCAGCAGGATACAATCAGATAAAAGTTTAAGATCTACACAGTCGCAGAGAACAGgtacacccttaatatatgatattgcttgtccagatgggcaagggaaatca Alignment from Spaln_nt2Genome CTCTTTACCTCTGTGTTTGGTGTGGGACTGAAGACAGCTGAGAAATGGTTCAGGATGGGTTTCAGAACTCTCAGCAAAATACAATCAGACAAAAGCCTGAGGTTTACACAAATGCAGAAAGCAG tagctcttcacctgggtcctgctagtggtttttccttttgggatgggaagCTTTTCACCTGCGTTTTTAGTTTAGGACTTAAGACACTTAAGAGGTGGTTCAGGATGGGTTTGAAGGCCCTCAGCAGGATACAATCAGATAAAAGTTTAAGATCTACACAGTCGCAGAGAACAGgtacacccttaatatatgatattgcttgtccagatgggcaagggaaatca Alignment from Pairagon CTCTTTACCTCTGTGTTTGGTGTGGGACTGAAGACAGCTGAGAAATGGTTCAGGATGGGTTTCAGAACTCTCAGCAAAATACAATCAGACAAAAGCCTGAGGTTTACACAAATGCAGAAAGCAG tagctcttcacctgggtcctgctagtggtttttccttttgggatgggaagCTTTTCACCTGCGTTTTTAGTTTAGGACTTAAGACACTTAAGAGGTGGTTCAGGATGGGTTTGAAGGCCCTCAGCAGGATACAATCAGATAAAAGTTTAAGATCTACACAGTCGCAGAGAACAGgtacacccttaatatatgatattgcttgtccagatgggcaagggaaatca Alignment from Exonerate_protein2genome CTCTTTACCTCTGTGTTTGGTGTGGGACTGAAGACAGCTGAGAAATGGTTCAGGATGGGTTTCAGAACTCTCAGCAAAATACAATCAGACAAAAGCCTGAGGTTTACACAAATGCAGAAAGCAG tagctcttcacctgggtcctgctagtggtttttccttttgggatgggaagCTTTTCACCTGCGTTTTTAGTTTAGGACTTAAGACACTTAAGAGGTGGTTCAGGATGGGTTTGAAGGCCCTCAGCAGGATACAATCAGATAAAAGTTTAAGATCTACACAGTCGCAGAGAACAGgtacacccttaatatatgatattgcttgtccagatgggcaagggaaatca Alignment from Exonerate_coding2genome CTCTTTACCTCTGTGTTTGGTGTGGGACTGAAGACAGCTGAGAAATGGTTCAGGATGGGTTTCAGAACTCTCAGCAAAATACAATCAGACAAAAGCCTGAGGTTTACACAAATGCAGAAAGCAG tagctcttcacctgggtcctgctagtggtttttccttttgggatgggaagCTTTTCACCTGCGTTTTTAGTTTAGGACTTAAGACACTTAAGAGGTGGTTCAGGATGGGTTTGAAGGCCCTCAGCAGGATACAATCAGATAAAAGTTTAAGATCTACACAGTCGCAGAGAACAGgtacacccttaatatatgatattgcttgtccagatgggcaagggaaatca Alignment from GeneWise CTCTTTACCTCTGTGTTTGGTGTGGGACTGAAGACAGCTGAGAAATGGTTCAGGATGGGTTTCAGAACTCTCAGCAAAATACAATCAGACAAAAGCCTGAGGTTTACACAAATGCAGAAAGCAG tagctcttcacctgggtcctgctagtggtttttccttttgggatgggaagCTTTTCACCTGCGTTTTTAGTTTAGGACTTAAGACACTTAAGAGGTGGTTCAGGATGGGTTTGAAGGCCCTCAGCAGGATACAATCAGATAAAAGTTTAAGATCTACACAGTCGCAGAGAACAGgtacacccttaatatatgatattgcttgtccagatgggcaagggaaatca #### Dock8_ID5382_5 --> 1 - 0 Original Alignment aAACCAAGGAAGTTCAGAGTTTTGCAGCTTTAAAAAGACGGGATCTCGCAGAGATTTTCAGAAGACGCTTCAGAAACAGACGTTTGAGTCAGAAACCTTGGAGTGCAGTGAACCGGACACTCAG ctctccttgccctatgaatgagaagaaacaggagcctgttcactccctagaAATCAAGGGAGTCCAGAGTTTTGCAGCTTTAAAAAAACAGGCTCTCACAGGGATTTTCCAAAAATGCCCCAAAAGCAAACATTTGAGTCAGAAACCCTGGATTGCAGTGAACCCGACACTCAAgtgagatagtattgccaaagggtttcagatataacattcatatgtgcagg Alignment from CESAR aAACCAAGGAAGTTCAGAGTTTTGCAGCTTTAAAAAGACGGGATCTCGCAGAGATTTTCAGAAGACGCTTCAGAAACAGACGTTTGAGTCAGAAACCTTGGAGTGCAGTGAACCGGACACTCAG ctctccttgccctatgaatgagaagaaacaggagcctgttcactccctagaAATCAAGGGAGTCCAGAGTTTTGCAGCTTTAAAAAAACAGGCTCTCACAGGGATTTTCCAAAAATGCCCCAAAAGCAAACATTTGAGTCAGAAACCCTGGATTGCAGTGAACCCGACACTCAAgtgagatagtattgccaaagggtttcagatataacattcatatgtgcagg Alignment from Spaln_aa2Genome AAACCAAGGAAGTTCAGAGTTTTGCAGCTTTAAAAAGACGGGATCTCGCAGAGATTTTCAGAAGACGCTTCAGAAACAGACGTTTGAGTCAGAAACCTTGGAGTGCAGTGAACCGGACACTCAG ctctccttgccctatgaatgagaagaaacaggagcctgttcactccctagAAATCAAGGGAGTCCAGAGTTTTGCAGCTTTAAAAAAACAGGCTCTCACAGGGATTTTCCAAAAATGCCCCAAAAGCAAACATTTGAGTCAGAAACCCTGGATTGCAGTGAACCCGACACTCAAgtgagatagtattgccaaagggtttcagatataacattcatatgtgcagg Alignment from Spaln_nt2Genome AAACCAAGGAAGTTCAGAGTTTTGCAGCTTTAAAAAGACGGGATCTCGCAGAGATTTTCAGAAGACGCTTCAGAAACAGACGTTTGAGTCAGAAACCTTGGAGTGCAGTGAACCGGACACTCAG ctctccttgccctatgaatgagaagaaacaggagcctgttcactccctagAAATCAAGGGAGTCCAGAGTTTTGCAGCTTTAAAAAAACAGGCTCTCACAGGGATTTTCCAAAAATGCCCCAAAAGCAAACATTTGAGTCAGAAACCCTGGATTGCAGTGAACCCGACACTCAAgtgagatagtattgccaaagggtttcagatataacattcatatgtgcagg Alignment from Pairagon AAACCAAGGAAGTTCAGAGTTTTGCAGCTTTAAAAAGACGGGATCTCGCAGAGATTTTCAGAAGACGCTTCAGAAACAGACGTTTGAGTCAGAAACCTTGGAGTGCAGTGAACCGGACACTCAG ctctccttgccctatgaatgagaagaaacaggagcctgttcactccctagAAATCAAGGGAGTCCAGAGTTTTGCAGCTTTAAAAAAACAGGCTCTCACAGGGATTTTCCAAAAATGCCCCAAAAGCAAACATTTGAGTCAGAAACCCTGGATTGCAGTGAACCCGACACTCAAgtgagatagtattgccaaagggtttcagatataacattcatatgtgcagg Alignment from Exonerate_protein2genome AAACCAAGGAAGTTCAGAGTTTTGCAGCTTTAAAAAGACGGGATCTCGCAGAGATTTTCAGAAGACGCTTCAGAAACAGACGTTTGAGTCAGAAACCTTGGAGTGCAGTGAACCGGACACTCAG ctctccttgccctatgaatgagaagaaacaggagcctgttcactccctagAAATCAAGGGAGTCCAGAGTTTTGCAGCTTTAAAAAAACAGGCTCTCACAGGGATTTTCCAAAAATGCCCCAAAAGCAAACATTTGAGTCAGAAACCCTGGATTGCAGTGAACCCGACACTCAAgtgagatagtattgccaaagggtttcagatataacattcatatgtgcagg Alignment from Exonerate_coding2genome ctctccttgccctatgaatgagaagaaacaggagcctgttcactccctagaaatcaagggagtccagagttttgcagctttaaaaaaacaggctctcacagggattttccaaaaatgccccaaaagcaaacatttgagtcagaaaccctggattgcagtgaacccgacactcaagtgagatagtattgccaaagggtttcagatataacattcatatgtgcagg Alignment from GeneWise AAACCAAGGAAGTTCAGAGTTTTGCAGCTTTAAAAAGACGGGATCTCGCAGAGATTTTCAGAAGACGCTTCAGAAACAGACGTTTGAGTCAGAAACCTTGGAGTGCAGTGAACCGGACACTCAG ctctccttgccctatgaatgagaagaaacaggagcctgttcactccctagAAATCAAGGGAGTCCAGAGTTTTGCAGCTTTAAAAAAACAGGCTCTCACAGGGATTTTCCAAAAATGCCCCAAAAGCAAACATTTGAGTCAGAAACCCTGGATTGCAGTGAACCCGACACTCAAgtgagatagtattgccaaagggtttcagatataacattcatatgtgcagg #### Dock8_ID5383_6 --> 0 - 0 Original Alignment ACAGGACCCCGTCATCCCTTAAACGTGCTGTGTGACGTGTCTGGGAAGGGCCCCCTCACTTCTTGTGACTTCGACCTCCGCAGCCTGCAGCCTGATGAGCGGCTGGAAAACCTGCTCCAGCTTGTGAGCGCTGAGGACTTTGAGAAGGAGAAGGAGGAGGCCCGCAAGACCAATCGGCCGGCTGAGCTCTTTGCCCTCTATCCGCCCGTGGATGAG ctttgaaagagtggtcacttaacccttgaactgatgctcccattgtccagACAGGACCACATCATCCGTTAAATGTGTTGTGTGACGTATCTGGGAAAGGGCCACTAACATCATGTGACTTTGACCTGCGCAGCCTGAAGCCTGATGAGCGGTTAGAAAACCTCCTCCAGCTTTTGAGTGCTGAGGATTTTGAGAAGGAGAAGGAAGAAGCGCGAAAGACCAACCGGCCAGCAGAGCTTTTTGCCCTCTATCCACCTGTGGAGGAGgtgagcataagttttcatagccaccagtctacatctcaggggcaatggac Alignment from CESAR ACAGGACCCCGTCATCCCTTAAACGTGCTGTGTGACGTGTCTGGGAAGGGCCCCCTCACTTCTTGTGACTTCGACCTCCGCAGCCTGCAGCCTGATGAGCGGCTGGAAAACCTGCTCCAGCTTGTGAGCGCTGAGGACTTTGAGAAGGAGAAGGAGGAGGCCCGCAAGACCAATCGGCCGGCTGAGCTCTTTGCCCTCTATCCGCCCGTGGATGAG ctttgaaagagtggtcacttaacccttgaactgatgctcccattgtccagACAGGACCACATCATCCGTTAAATGTGTTGTGTGACGTATCTGGGAAAGGGCCACTAACATCATGTGACTTTGACCTGCGCAGCCTGAAGCCTGATGAGCGGTTAGAAAACCTCCTCCAGCTTTTGAGTGCTGAGGATTTTGAGAAGGAGAAGGAAGAAGCGCGAAAGACCAACCGGCCAGCAGAGCTTTTTGCCCTCTATCCACCTGTGGAGGAGgtgagcataagttttcatagccaccagtctacatctcaggggcaatggac Alignment from Spaln_aa2Genome ACAGGACCCCGTCATCCCTTAAACGTGCTGTGTGACGTGTCTGGGAAGGGCCCCCTCACTTCTTGTGACTTCGACCTCCGCAGCCTGCAGCCTGATGAGCGGCTGGAAAACCTGCTCCAGCTTGTGAGCGCTGAGGACTTTGAGAAGGAGAAGGAGGAGGCCCGCAAGACCAATCGGCCGGCTGAGCTCTTTGCCCTCTATCCGCCCGTGGATGAG ctttgaaagagtggtcacttaacccttgaactgatgctcccattgtccagACAGGACCACATCATCCGTTAAATGTGTTGTGTGACGTATCTGGGAAAGGGCCACTAACATCATGTGACTTTGACCTGCGCAGCCTGAAGCCTGATGAGCGGTTAGAAAACCTCCTCCAGCTTTTGAGTGCTGAGGATTTTGAGAAGGAGAAGGAAGAAGCGCGAAAGACCAACCGGCCAGCAGAGCTTTTTGCCCTCTATCCACCTGTGGAGGAGgtgagcataagttttcatagccaccagtctacatctcaggggcaatggac Alignment from Spaln_nt2Genome ACAGGACCCCGTCATCCCTTAAACGTGCTGTGTGACGTGTCTGGGAAGGGCCCCCTCACTTCTTGTGACTTCGACCTCCGCAGCCTGCAGCCTGATGAGCGGCTGGAAAACCTGCTCCAGCTTGTGAGCGCTGAGGACTTTGAGAAGGAGAAGGAGGAGGCCCGCAAGACCAATCGGCCGGCTGAGCTCTTTGCCCTCTATCCGCCCGTGGATGAG ctttgaaagagtggtcacttaacccttgaactgatgctcccattgtccagACAGGACCACATCATCCGTTAAATGTGTTGTGTGACGTATCTGGGAAAGGGCCACTAACATCATGTGACTTTGACCTGCGCAGCCTGAAGCCTGATGAGCGGTTAGAAAACCTCCTCCAGCTTTTGAGTGCTGAGGATTTTGAGAAGGAGAAGGAAGAAGCGCGAAAGACCAACCGGCCAGCAGAGCTTTTTGCCCTCTATCCACCTGTGGAGGAGgtgagcataagttttcatagccaccagtctacatctcaggggcaatggac Alignment from Pairagon ACAGGACCCCGTCATCCCTTAAACGTGCTGTGTGACGTGTCTGGGAAGGGCCCCCTCACTTCTTGTGACTTCGACCTCCGCAGCCTGCAGCCTGATGAGCGGCTGGAAAACCTGCTCCAGCTTGTGAGCGCTGAGGACTTTGAGAAGGAGAAGGAGGAGGCCCGCAAGACCAATCGGCCGGCTGAGCTCTTTGCCCTCTATCCGCCCGTGGATGAG ctttgaaagagtggtcacttaacccttgaactgatgctcccattgtccagACAGGACCACATCATCCGTTAAATGTGTTGTGTGACGTATCTGGGAAAGGGCCACTAACATCATGTGACTTTGACCTGCGCAGCCTGAAGCCTGATGAGCGGTTAGAAAACCTCCTCCAGCTTTTGAGTGCTGAGGATTTTGAGAAGGAGAAGGAAGAAGCGCGAAAGACCAACCGGCCAGCAGAGCTTTTTGCCCTCTATCCACCTGTGGAGGAGgtgagcataagttttcatagccaccagtctacatctcaggggcaatggac Alignment from Exonerate_protein2genome ACAGGACCCCGTCATCCCTTAAACGTGCTGTGTGACGTGTCTGGGAAGGGCCCCCTCACTTCTTGTGACTTCGACCTCCGCAGCCTGCAGCCTGATGAGCGGCTGGAAAACCTGCTCCAGCTTGTGAGCGCTGAGGACTTTGAGAAGGAGAAGGAGGAGGCCCGCAAGACCAATCGGCCGGCTGAGCTCTTTGCCCTCTATCCGCCCGTGGATGAG ctttgaaagagtggtcacttaacccttgaactgatgctcccattgtccagACAGGACCACATCATCCGTTAAATGTGTTGTGTGACGTATCTGGGAAAGGGCCACTAACATCATGTGACTTTGACCTGCGCAGCCTGAAGCCTGATGAGCGGTTAGAAAACCTCCTCCAGCTTTTGAGTGCTGAGGATTTTGAGAAGGAGAAGGAAGAAGCGCGAAAGACCAACCGGCCAGCAGAGCTTTTTGCCCTCTATCCACCTGTGGAGGAGgtgagcataagttttcatagccaccagtctacatctcaggggcaatggac Alignment from Exonerate_coding2genome ctttgaaagagtggtcacttaacccttgaactgatgctcccattgtccagacaggaccacatcatccgttaaatgtgttgtgtgacgtatctgggaaagggccactaacatcatgtgactttgacctgcgcagcctgaagcctgatgagcggttagaaaacctcctccagcttttgagtgctgaggattttgagaaggagaaggaagaagcgcgaaagaccaaccggccagcagagctttttgccctctatccacctgtggaggaggtgagcataagttttcatagccaccagtctacatctcaggggcaatggac Alignment from GeneWise ACAGGACCCCGTCATCCCTTAAACGTGCTGTGTGACGTGTCTGGGAAGGGCCCCCTCACTTCTTGTGACTTCGACCTCCGCAGCCTGCAGCCTGATGAGCGGCTGGAAAACCTGCTCCAGCTTGTGAGCGCTGAGGACTTTGAGAAGGAGAAGGAGGAGGCCCGCAAGACCAATCGGCCGGCTGAGCTCTTTGCCCTCTATCCGCCCGTGGATGAG ctttgaaagagtggtcacttaacccttgaactgatgctcccattgtccagACAGGACCACATCATCCGTTAAATGTGTTGTGTGACGTATCTGGGAAAGGGCCACTAACATCATGTGACTTTGACCTGCGCAGCCTGAAGCCTGATGAGCGGTTAGAAAACCTCCTCCAGCTTTTGAGTGCTGAGGATTTTGAGAAGGAGAAGGAAGAAGCGCGAAAGACCAACCGGCCAGCAGAGCTTTTTGCCCTCTATCCACCTGTGGAGGAGgtgagcataagttttcatagccaccagtctacatctcaggggcaatggac #### Dock8_ID5384_7 --> 0 - 2 Original Alignment GAGGATGCTGTGGAAATACGTCCAGTACCTGAATGTCCTAAGGAACATCTGGGCAACAGAATATTGGTCAAGGTGCTGACTCTGaa ctcacctctatggacactgccttttctagcttgccctttcctggtcacagGAGGATGCTGTGGAAATACGTCCAGTACCTGATTGTCCCAAGGAGCATCTCGGCAATAGAATATTGCTCAAGGTGCTGACACTGaagtaagtaacaatggcatcaattgaaggttattataaagcaccttgttgct Alignment from CESAR GAGGATGCTGTGGAAATACGTCCAGTACCTGAATGTCCTAAGGAACATCTGGGCAACAGAATATTGGTCAAGGTGCTGACTCTGaa ctcacctctatggacactgccttttctagcttgccctttcctggtcacagGAGGATGCTGTGGAAATACGTCCAGTACCTGATTGTCCCAAGGAGCATCTCGGCAATAGAATATTGCTCAAGGTGCTGACACTGaagtaagtaacaatggcatcaattgaaggttattataaagcaccttgttgct Alignment from Spaln_aa2Genome GAGGATGCTGTGGAAATACGTCCAGTACCTGAATGTCCTAAGGAACATCTGGGCAACAGAATATTGGTCAAGGTGCTGACTCTGAA ctcacctctatggacactgccttttctagcttgccctttcctggtcacagGAGGATGCTGTGGAAATACGTCCAGTACCTGATTGTCCCAAGGAGCATCTCGGCAATAGAATATTGCTCAAGGTGCTGACACTGAAgtaagtaacaatggcatcaattgaaggttattataaagcaccttgttgct Alignment from Spaln_nt2Genome GAGGATGCTGTGGAAATACGTCCAGTACCTGAATGTCCTAAGGAACATCTGGGCAACAGAATATTGGTCAAGGTGCTGACTCTGAA ctcacctctatggacactgccttttctagcttgccctttcctggtcacagGAGGATGCTGTGGAAATACGTCCAGTACCTGATTGTCCCAAGGAGCATCTCGGCAATAGAATATTGCTCAAGGTGCTGACACTGAAgtaagtaacaatggcatcaattgaaggttattataaagcaccttgttgct Alignment from Pairagon GAGGATGCTGTGGAAATACGTCCAGTACCTGAATGTCCTAAGGAACATCTGGGCAACAGAATATTGGTCAAGGTGCTGACTCTGAA ctcacctctatggacactgccttttctagcttgccctttcctggtcacagGAGGATGCTGTGGAAATACGTCCAGTACCTGATTGTCCCAAGGAGCATCTCGGCAATAGAATATTGCTCAAGGTGCTGACACTGAAgtaagtaacaatggcatcaattgaaggttattataaagcaccttgttgct Alignment from Exonerate_protein2genome GAGGATGCTGTGGAAATACGTCCAGTACCTGAATGTCCTAAGGAACATCTGGGCAACAGAATATTGGTCAAGGTGCTGACTCTGAA ctcacctctatggacactgccttttctagcttgccctttcctggtcacagGAGGATGCTGTGGAAATACGTCCAGTACCTGATTGTCCCAAGGAGCATCTCGGCAATAGAATATTGCTCAAGGTGCTGACACTGAAgtaagtaacaatggcatcaattgaaggttattataaagcaccttgttgct Alignment from Exonerate_coding2genome ctcacctctatggacactgccttttctagcttgccctttcctggtcacaggaggatgctgtggaaatacgtccagtacctgattgtcccaaggagcatctcggcaatagaatattgctcaaggtgctgacactgaagtaagtaacaatggcatcaattgaaggttattataaagcaccttgttgct Alignment from GeneWise GAGGATGCTGTGGAAATACGTCCAGTACCTGAATGTCCTAAGGAACATCTGGGCAACAGAATATTGGTCAAGGTGCTGACTCTGAA ctcacctctatggacactgccttttctagcttgccctttcctggtcacagGAGGATGCTGTGGAAATACGTCCAGTACCTGATTGTCCCAAGGAGCATCTCGGCAATAGAATATTGCTCAAGGTGCTGACACTGAAgtaagtaacaatggcatcaattgaaggttattataaagcaccttgttgct #### Dock8_ID5386_9 --> 0 - 0 Original Alignment ATCTCAGAAAATTTCCACTGTGACCTGAACTCCGACCAGTTCAAAGGGTTTCTGCGAGCTCACACACCCTCGATTGACCCATCGAGTCAGGCTAGGTCTGCCGTGTTCTCTGTCACCTACCCATCTTCAGACATCTACCTGGTTGTCAAG aggatttgttttctaggaatgtaacttggcttggccggttgccctcacagGTCTCAGAAAATTTCCACTGTGATCTGAACTCTGACCGGTTCAAAGGATTTCTGCGTACTCACACACCCTCTATAGACCCGTTAAGTCAGGCTCGGTCTGATGTGTTCTCAGTTACGCATCCATCATCAGACATTCATTTGGTTGTGAAAgtaggtaccaaagagtacaccccctctatgatactcagtttaatacttcc Alignment from CESAR ATCTCAGAAAATTTCCACTGTGACCTGAACTCCGACCAGTTCAAAGGGTTTCTGCGAGCTCACACACCCTCGATTGACCCATCGAGTCAGGCTAGGTCTGCCGTGTTCTCTGTCACCTACCCATCTTCAGACATCTACCTGGTTGTCAAG aggatttgttttctaggaatgtaacttggcttggccggttgccctcacagGTCTCAGAAAATTTCCACTGTGATCTGAACTCTGACCGGTTCAAAGGATTTCTGCGTACTCACACACCCTCTATAGACCCGTTAAGTCAGGCTCGGTCTGATGTGTTCTCAGTTACGCATCCATCATCAGACATTCATTTGGTTGTGAAAgtaggtaccaaagagtacaccccctctatgatactcagtttaatacttcc Alignment from Spaln_aa2Genome ATCTCAGAAAATTTCCACTGTGACCTGAACTCCGACCAGTTCAAAGGGTTTCTGCGAGCTCACACACCCTCGATTGACCCATCGAGTCAGGCTAGGTCTGCCGTGTTCTCTGTCACCTACCCATCTTCAGACATCTACCTGGTTGTCAAG aggatttgttttctaggaatgtaacttggcttggccggttgccctcacagGTCTCAGAAAATTTCCACTGTGATCTGAACTCTGACCGGTTCAAAGGATTTCTGCGTACTCACACACCCTCTATAGACCCGTTAAGTCAGGCTCGGTCTGATGTGTTCTCAGTTACGCATCCATCATCAGACATTCATTTGGTTGTGAAAgtaggtaccaaagagtacaccccctctatgatactcagtttaatacttcc Alignment from Spaln_nt2Genome ATCTCAGAAAATTTCCACTGTGACCTGAACTCCGACCAGTTCAAAGGGTTTCTGCGAGCTCACACACCCTCGATTGACCCATCGAGTCAGGCTAGGTCTGCCGTGTTCTCTGTCACCTACCCATCTTCAGACATCTACCTGGTTGTCAAG aggatttgttttctaggaatgtaacttggcttggccggttgccctcacagGTCTCAGAAAATTTCCACTGTGATCTGAACTCTGACCGGTTCAAAGGATTTCTGCGTACTCACACACCCTCTATAGACCCGTTAAGTCAGGCTCGGTCTGATGTGTTCTCAGTTACGCATCCATCATCAGACATTCATTTGGTTGTGAAAgtaggtaccaaagagtacaccccctctatgatactcagtttaatacttcc Alignment from Pairagon ATCTCAGAAAATTTCCACTGTGACCTGAACTCCGACCAGTTCAAAGGGTTTCTGCGAGCTCACACACCCTCGATTGACCCATCGAGTCAGGCTAGGTCTGCCGTGTTCTCTGTCACCTACCCATCTTCAGACATCTACCTGGTTGTCAAG aggatttgttttctaggaatgtaacttggcttggccggttgccctcacagGTCTCAGAAAATTTCCACTGTGATCTGAACTCTGACCGGTTCAAAGGATTTCTGCGTACTCACACACCCTCTATAGACCCGTTAAGTCAGGCTCGGTCTGATGTGTTCTCAGTTACGCATCCATCATCAGACATTCATTTGGTTGTGAAAgtaggtaccaaagagtacaccccctctatgatactcagtttaatacttcc Alignment from Exonerate_protein2genome ATCTCAGAAAATTTCCACTGTGACCTGAACTCCGACCAGTTCAAAGGGTTTCTGCGAGCTCACACACCCTCGATTGACCCATCGAGTCAGGCTAGGTCTGCCGTGTTCTCTGTCACCTACCCATCTTCAGACATCTACCTGGTTGTCAAG aggatttgttttctaggaatgtaacttggcttggccggttgccctcacagGTCTCAGAAAATTTCCACTGTGATCTGAACTCTGACCGGTTCAAAGGATTTCTGCGTACTCACACACCCTCTATAGACCCGTTAAGTCAGGCTCGGTCTGATGTGTTCTCAGTTACGCATCCATCATCAGACATTCATTTGGTTGTGAAAgtaggtaccaaagagtacaccccctctatgatactcagtttaatacttcc Alignment from Exonerate_coding2genome aggatttgttttctaggaatgtaacttggcttggccggttgccctcacaggtctcagaaaatttccactgtgatctgaactctgaccggttcaaaggatttctgcgtactcacacaccctctatagacccgttaagtcaggctcggtctgatgtgttctcagttacgcatccatcatcagacattcatttggttgtgaaagtaggtaccaaagagtacaccccctctatgatactcagtttaatacttcc Alignment from GeneWise ATCTCAGAAAATTTCCACTGTGACCTGAACTCCGACCAGTTCAAAGGGTTTCTGCGAGCTCACACACCCTCGATTGACCCATCGAGTCAGGCTAGGTCTGCCGTGTTCTCTGTCACCTACCCATCTTCAGACATCTACCTGGTTGTCAAG aggatttgttttctaggaatgtaacttggcttggccggttgccctcacagGTCTCAGAAAATTTCCACTGTGATCTGAACTCTGACCGGTTCAAAGGATTTCTGCGTACTCACACACCCTCTATAGACCCGTTAAGTCAGGCTCGGTCTGATGTGTTCTCAGTTACGCATCCATCATCAGACATTCATTTGGTTGTGAAAgtaggtaccaaagagtacaccccctctatgatactcagtttaatacttcc #### Dock8_ID5394_15 --> 1 - 0 Original Alignment aAACCTTCTGTACGTATACCCCCAGCGACTGAACTTCGCTAGCAAGCTAGCATCTGCCCGGAACATCACAATAAAGATTCAGTTTATGTGCGGAGAAGACCCCAGCAATGCTATGCCG ctatccagtggtggctactcaaggtagtaagtttctcattttcttcatagaAACCTTCTGTATATATACCCCCAGCAGCTGAACTTTGCAAGTAAGTTGGCATCTGCACGCAACATCACAATAAAGATTCAGTTCATGTGTGGAGAAGATCCTAGCAATGCTATGCCTgtgacggtgtgctggatggatgtgtgtgtgtctgattttagctcaacaat Alignment from CESAR aAACCTTCTGTACGTATACCCCCAGCGACTGAACTTCGCTAGCAAGCTAGCATCTGCCCGGAACATCACAATAAAGATTCAGTTTATGTGCGGAGAAGACCCCAGCAATGCTATGCCG ctatccagtggtggctactcaaggtagtaagtttctcattttcttcatagaAACCTTCTGTATATATACCCCCAGCAGCTGAACTTTGCAAGTAAGTTGGCATCTGCACGCAACATCACAATAAAGATTCAGTTCATGTGTGGAGAAGATCCTAGCAATGCTATGCCTgtgacggtgtgctggatggatgtgtgtgtgtctgattttagctcaacaat Alignment from Spaln_aa2Genome AAACCTTCTGTACGTATACCCCCAGCGACTGAACTTCGCTAGCAAGCTAGCATCTGCCCGGAACATCACAATAAAGATTCAGTTTATGTGCGGAGAAGACCCCAGCAATGCTATGCCG ctatccagtggtggctactcaaggtagtaagtttctcattttcttcatagAAACCTTCTGTATATATACCCCCAGCAGCTGAACTTTGCAAGTAAGTTGGCATCTGCACGCAACATCACAATAAAGATTCAGTTCATGTGTGGAGAAGATCCTAGCAATGCTATGCCTgtgacggtgtgctggatggatgtgtgtgtgtctgattttagctcaacaat Alignment from Spaln_nt2Genome AAACCTTCTGTACGTATACCCCCAGCGACTGAACTTCGCTAGCAAGCTAGCATCTGCCCGGAACATCACAATAAAGATTCAGTTTATGTGCGGAGAAGACCCCAGCAATGCTATGCCG ctatccagtggtggctactcaaggtagtaagtttctcattttcttcatagAAACCTTCTGTATATATACCCCCAGCAGCTGAACTTTGCAAGTAAGTTGGCATCTGCACGCAACATCACAATAAAGATTCAGTTCATGTGTGGAGAAGATCCTAGCAATGCTATGCCTgtgacggtgtgctggatggatgtgtgtgtgtctgattttagctcaacaat Alignment from Pairagon AAACCTTCTGTACGTATACCCCCAGCGACTGAACTTCGCTAGCAAGCTAGCATCTGCCCGGAACATCACAATAAAGATTCAGTTTATGTGCGGAGAAGACCCCAGCAATGCTATGCCG ctatccagtggtggctactcaaggtagtaagtttctcattttcttcatagAAACCTTCTGTATATATACCCCCAGCAGCTGAACTTTGCAAGTAAGTTGGCATCTGCACGCAACATCACAATAAAGATTCAGTTCATGTGTGGAGAAGATCCTAGCAATGCTATGCCTgtgacggtgtgctggatggatgtgtgtgtgtctgattttagctcaacaat Alignment from Exonerate_protein2genome AAACCTTCTGTACGTATACCCCCAGCGACTGAACTTCGCTAGCAAGCTAGCATCTGCCCGGAACATCACAATAAAGATTCAGTTTATGTGCGGAGAAGACCCCAGCAATGCTATGCCG ctatccagtggtggctactcaaggtagtaagtttctcattttcttcatagAAACCTTCTGTATATATACCCCCAGCAGCTGAACTTTGCAAGTAAGTTGGCATCTGCACGCAACATCACAATAAAGATTCAGTTCATGTGTGGAGAAGATCCTAGCAATGCTATGCCTgtgacggtgtgctggatggatgtgtgtgtgtctgattttagctcaacaat Alignment from Exonerate_coding2genome ctatccagtggtggctactcaaggtagtaagtttctcattttcttcatagaaaccttctgtatatatacccccagcagctgaactttgcaagtaagttggcatctgcacgcaacatcacaataaagattcagttcatgtgtggagaagatcctagcaatgctatgcctgtgacggtgtgctggatggatgtgtgtgtgtctgattttagctcaacaat Alignment from GeneWise AAACCTTCTGTACGTATACCCCCAGCGACTGAACTTCGCTAGCAAGCTAGCATCTGCCCGGAACATCACAATAAAGATTCAGTTTATGTGCGGAGAAGACCCCAGCAATGCTATGCCG ctatccagtggtggctactcaaggtagtaagtttctcattttcttcatagAAACCTTCTGTATATATACCCCCAGCAGCTGAACTTTGCAAGTAAGTTGGCATCTGCACGCAACATCACAATAAAGATTCAGTTCATGTGTGGAGAAGATCCTAGCAATGCTATGCCTgtgacggtgtgctggatggatgtgtgtgtgtctgattttagctcaacaat #### Dock8_ID5401_22 --> 2 - 0 Original Alignment gtGGCCCCACCACCGTAGTCCCCGACCCCCGATACCACACATATGGACGCACATCTGCCGCTGCAGTGAGTTCAAAGCTGATGCAGGCCCGTGTGATGAGCAGCAGCAACCCAGACCTGACTGGGTCACACTGTGCAGCCGATGAGGAAGTTAAGAACATCATGTCTTCAAAG ccactaaaaccaatccatctcaagatcttaatttatggaattctttctaggtGGTCCTACCACAGTAGTGCCTGACCCCAGACACCGGACATATGGACACACATCTTCTGCAGCAGTAAGGTCAAAATTAATGCAGGCCCACGTGACAAGCAGTAGGAATCCAGACCTAACAGGATTACACTGTGCAACTGATGAGAAAGTCAAAAATATCATTTCTTCCAAAgtgcggctagggagaaggggtatatgcagttttgttttgctaccggacca Alignment from CESAR gtGGCCCCACCACCGTAGTCCCCGACCCCCGATACCACACATATGGACGCACATCTGCCGCTGCAGTGAGTTCAAAGCTGATGCAGGCCCGTGTGATGAGCAGCAGCAACCCAGACCTGACTGGGTCACACTGTGCAGCCGATGAGGAAGTTAAGAACATCATGTCTTCAAAG ccactaaaaccaatccatctcaagatcttaatttatggaattctttctaggtGGTCCTACCACAGTAGTGCCTGACCCCAGACACCGGACATATGGACACACATCTTCTGCAGCAGTAAGGTCAAAATTAATGCAGGCCCACGTGACAAGCAGTAGGAATCCAGACCTAACAGGATTACACTGTGCAACTGATGAGAAAGTCAAAAATATCATTTCTTCCAAAgtgcggctagggagaaggggtatatgcagttttgttttgctaccggacca Alignment from Spaln_aa2Genome GTGGCCCCACCACCGTAGTCCCCGACCCCCGATACCACACATATGGACGCACATCTGCCGCTGCAGTGAGTTCAAAGCTGATGCAGGCCCGTGTGATGAGCAGCAGCAACCCAGACCTGACTGGGTCACACTGTGCAGCCGATGAGGAAGTTAAGAACATCATGTCTTCAAAG ccactaaaaccaatccatctcaagatcttaatttatggaattctttctagGTGGTCCTACCACAGTAGTGCCTGACCCCAGACACCGGACATATGGACACACATCTTCTGCAGCAGTAAGGTCAAAATTAATGCAGGCCCACGTGACAAGCAGTAGGAATCCAGACCTAACAGGATTACACTGTGCAACTGATGAGAAAGTCAAAAATATCATTTCTTCCAAAgtgcggctagggagaaggggtatatgcagttttgttttgctaccggacca Alignment from Spaln_nt2Genome GTGGCCCCACCACCGTAGTCCCCGACCCCCGATACCACACATATGGACGCACATCTGCCGCTGCAGTGAGTTCAAAGCTGATGCAGGCCCGTGTGATGAGCAGCAGCAACCCAGACCTGACTGGGTCACACTGTGCAGCCGATGAGGAAGTTAAGAACATCATGTCTTCAAAG ccactaaaaccaatccatctcaagatcttaatttatggaattctttctagGTGGTCCTACCACAGTAGTGCCTGACCCCAGACACCGGACATATGGACACACATCTTCTGCAGCAGTAAGGTCAAAATTAATGCAGGCCCACGTGACAAGCAGTAGGAATCCAGACCTAACAGGATTACACTGTGCAACTGATGAGAAAGTCAAAAATATCATTTCTTCCAAAgtgcggctagggagaaggggtatatgcagttttgttttgctaccggacca Alignment from Pairagon GTGGCCCCACCACCGTAGTCCCCGACCCCCGATACCACACATATGGACGCACATCTGCCGCTGCAGTGAGTTCAAAGCTGATGCAGGCCCGTGTGATGAGCAGCAGCAACCCAGACCTGACTGGGTCACACTGTGCAGCCGATGAGGAAGTTAAGAACATCATGTCTTCAAAG ccactaaaaccaatccatctcaagatcttaatttatggaattctttctagGTGGTCCTACCACAGTAGTGCCTGACCCCAGACACCGGACATATGGACACACATCTTCTGCAGCAGTAAGGTCAAAATTAATGCAGGCCCACGTGACAAGCAGTAGGAATCCAGACCTAACAGGATTACACTGTGCAACTGATGAGAAAGTCAAAAATATCATTTCTTCCAAAgtgcggctagggagaaggggtatatgcagttttgttttgctaccggacca Alignment from Exonerate_protein2genome GTGGCCCCACCACCGTAGTCCCCGACCCCCGATACCACACATATGGACGCACATCTGCCGCTGCAGTGAGTTCAAAGCTGATGCAGGCCCGTGTGATGAGCAGCAGCAACCCAGACCTGACTGGGTCACACTGTGCAGCCGATGAGGAAGTTAAGAACATCATGTCTTCAAAG ccactaaaaccaatccatctcaagatcttaatttatggaattctttctagGTGGTCCTACCACAGTAGTGCCTGACCCCAGACACCGGACATATGGACACACATCTTCTGCAGCAGTAAGGTCAAAATTAATGCAGGCCCACGTGACAAGCAGTAGGAATCCAGACCTAACAGGATTACACTGTGCAACTGATGAGAAAGTCAAAAATATCATTTCTTCCAAAgtgcggctagggagaaggggtatatgcagttttgttttgctaccggacca Alignment from Exonerate_coding2genome ccactaaaaccaatccatctcaagatcttaatttatggaattctttctaggtggtcctaccacagtagtgcctgaccccagacaccggacatatggacacacatcttctgcagcagtaaggtcaaaattaatgcaggcccacgtgacaagcagtaggaatccagacctaacaggattacactgtgcaactgatgagaaagtcaaaaatatcatttcttccaaagtgcggctagggagaaggggtatatgcagttttgttttgctaccggacca Alignment from GeneWise GTGGCCCCACCACCGTAGTCCCCGACCCCCGATACCACACATATGGACGCACATCTGCCGCTGCAGTGAGTTCAAAGCTGATGCAGGCCCGTGTGATGAGCAGCAGCAACCCAGACCTGACTGGGTCACACTGTGCAGCCGATGAGGAAGTTAAGAACATCATGTCTTCAAAG ccactaaaaccaatccatctcaagatcttaatttatggaattctttctagGTGGTCCTACCACAGTAGTGCCTGACCCCAGACACCGGACATATGGACACACATCTTCTGCAGCAGTAAGGTCAAAATTAATGCAGGCCCACGTGACAAGCAGTAGGAATCCAGACCTAACAGGATTACACTGTGCAACTGATGAGAAAGTCAAAAATATCATTTCTTCCAAAgtgcggctagggagaaggggtatatgcagttttgttttgctaccggacca #### Dock8_ID5423_41 --> 0 - 0 Original Alignment GGAGGCTTGTACGAGACGGTTAATGAAGTCTACAAGCTGGTCATCCCTATCCTGGAGGCACACAGAGATTTCCGGAAGCTGACCTCCACTCACGACAAGCTGCAGAAGGCCTTCGATAACATCATCAACAAG tctacattatgcacacctgtgctttgagagttcactctatctccttccagGGGGGCTTGTATGAAACAGTCAATGAAGTCTACAAGCTAATCATCCCTATCTTGGAGGCACAAAAAGACCTACATAAGCTCACCTCCACACATGATAGGCTGCAGAAAGCCTTTGATAACATCACCAATAAGgtaagccaggcaaccactgtttccctgatccaccccatgtttggcaattc Alignment from CESAR GGAGGCTTGTACGAGACGGTTAATGAAGTCTACAAGCTGGTCATCCCTATCCTGGAGGCACACAGAGATTTCCGGAAGCTGACCTCCACTCACGACAAGCTGCAGAAGGCCTTCGATAACATCATCAACAAG tctacattatgcacacctgtgctttgagagttcactctatctccttccagGGGGGCTTGTATGAAACAGTCAATGAAGTCTACAAGCTAATCATCCCTATCTTGGAGGCACAAAAAGACCTACATAAGCTCACCTCCACACATGATAGGCTGCAGAAAGCCTTTGATAACATCACCAATAAGgtaagccaggcaaccactgtttccctgatccaccccatgtttggcaattc Alignment from Spaln_aa2Genome GGAGGCTTGTACGAGACGGTTAATGAAGTCTACAAGCTGGTCATCCCTATCCTGGAGGCACACAGAGATTTCCGGAAGCTGACCTCCACTCACGACAAGCTGCAGAAGGCCTTCGATAACATCATCAACAAG tctacattatgcacacctgtgctttgagagttcactctatctccttccagGGGGGCTTGTATGAAACAGTCAATGAAGTCTACAAGCTAATCATCCCTATCTTGGAGGCACAAAAAGACCTACATAAGCTCACCTCCACACATGATAGGCTGCAGAAAGCCTTTGATAACATCACCAATAAGgtaagccaggcaaccactgtttccctgatccaccccatgtttggcaattc Alignment from Spaln_nt2Genome GGAGGCTTGTACGAGACGGTTAATGAAGTCTACAAGCTGGTCATCCCTATCCTGGAGGCACACAGAGATTTCCGGAAGCTGACCTCCACTCACGACAAGCTGCAGAAGGCCTTCGATAACATCATCAACAAG tctacattatgcacacctgtgctttgagagttcactctatctccttccagGGGGGCTTGTATGAAACAGTCAATGAAGTCTACAAGCTAATCATCCCTATCTTGGAGGCACAAAAAGACCTACATAAGCTCACCTCCACACATGATAGGCTGCAGAAAGCCTTTGATAACATCACCAATAAGgtaagccaggcaaccactgtttccctgatccaccccatgtttggcaattc Alignment from Pairagon GGAGGCTTGTACGAGACGGTTAATGAAGTCTACAAGCTGGTCATCCCTATCCTGGAGGCACACAGAGATTTCCGGAAGCTGACCTCCACTCACGACAAGCTGCAGAAGGCCTTCGATAACATCATCAACAAG tctacattatgcacacctgtgctttgagagttcactctatctccttccagGGGGGCTTGTATGAAACAGTCAATGAAGTCTACAAGCTAATCATCCCTATCTTGGAGGCACAAAAAGACCTACATAAGCTCACCTCCACACATGATAGGCTGCAGAAAGCCTTTGATAACATCACCAATAAGgtaagccaggcaaccactgtttccctgatccaccccatgtttggcaattc Alignment from Exonerate_protein2genome GGAGGCTTGTACGAGACGGTTAATGAAGTCTACAAGCTGGTCATCCCTATCCTGGAGGCACACAGAGATTTCCGGAAGCTGACCTCCACTCACGACAAGCTGCAGAAGGCCTTCGATAACATCATCAACAAG tctacattatgcacacctgtgctttgagagttcactctatctccttccagGGGGGCTTGTATGAAACAGTCAATGAAGTCTACAAGCTAATCATCCCTATCTTGGAGGCACAAAAAGACCTACATAAGCTCACCTCCACACATGATAGGCTGCAGAAAGCCTTTGATAACATCACCAATAAGgtaagccaggcaaccactgtttccctgatccaccccatgtttggcaattc Alignment from Exonerate_coding2genome GGAGGCTTGTACGAGACGGTTAATGAAGTCTACAAGCTGGTCATCCCTATCCTGGAGGCACACAGAGATTTCCGGAAGCTGACCTCCACTCACGACAAGCTGCAGAAGGCCTTCGATAACATCATCAACAAG tctacattatgcacacctgtgctttgagagttcactctatctccttccagGGGGGCTTGTATGAAACAGTCAATGAAGTCTACAAGCTAATCATCCCTATCTTGGAGGCACAAAAAGACCTACATAAGCTCACCTCCACACATGATAGGCTGCAGAAAGCCTTTGATAACATCACCAATAAGgtaagccaggcaaccactgtttccctgatccaccccatgtttggcaattc Alignment from GeneWise GGAGGCTTGTACGAGACGGTTAATGAAGTCTACAAGCTGGTCATCCCTATCCTGGAGGCACACAGAGATTTCCGGAAGCTGACCTCCACTCACGACAAGCTGCAGAAGGCCTTCGATAACATCATCAACAAG tctacattatgcacacctgtgctttgagagttcactctatctccttccagGGGGGCTTGTATGAAACAGTCAATGAAGTCTACAAGCTAATCATCCCTATCTTGGAGGCACAAAAAGACCTACATAAGCTCACCTCCACACATGATAGGCTGCAGAAAGCCTTTGATAACATCACCAATAAGgtaagccaggcaaccactgtttccctgatccaccccatgtttggcaattc #### Dock8_ID5425_43 --> 0 - 0 Original Alignment GGATTTTATGGCCAGTGTTTCGGTGCAGAGTTTGTGGAAGTGATAAAAGACTCTACTCCAGTGGACAAAACCAAGTTGGATCCTAACAAG atctgtcttgtactcttactggttgaggacccttgctgtctcctttacagGGATTCCATGGCCAGTGTTTTGGCGCAGAGTTTGTGGAAGCGATAAAAGATTCTACTCCAGTGGATAAAACCAAGCTGGATCCTAATAAAgtaagtcatgattcacattgggtaatcttgctcaagatctttaagtgact Alignment from CESAR GGATTTTATGGCCAGTGTTTCGGTGCAGAGTTTGTGGAAGTGATAAAAGACTCTACTCCAGTGGACAAAACCAAGTTGGATCCTAACAAG atctgtcttgtactcttactggttgaggacccttgctgtctcctttacagGGATTCCATGGCCAGTGTTTTGGCGCAGAGTTTGTGGAAGCGATAAAAGATTCTACTCCAGTGGATAAAACCAAGCTGGATCCTAATAAAgtaagtcatgattcacattgggtaatcttgctcaagatctttaagtgact Alignment from Spaln_aa2Genome GGATTTTATGGCCAGTGTTTCGGTGCAGAGTTTGTGGAAGTGATAAAAGACTCTACTCCAGTGGACAAAACCAAGTTGGATCCTAACAAG atctgtcttgtactcttactggttgaggacccttgctgtctcctttacagGGATTCCATGGCCAGTGTTTTGGCGCAGAGTTTGTGGAAGCGATAAAAGATTCTACTCCAGTGGATAAAACCAAGCTGGATCCTAATAAAgtaagtcatgattcacattgggtaatcttgctcaagatctttaagtgact Alignment from Spaln_nt2Genome GGATTTTATGGCCAGTGTTTCGGTGCAGAGTTTGTGGAAGTGATAAAAGACTCTACTCCAGTGGACAAAACCAAGTTGGATCCTAACAAG atctgtcttgtactcttactggttgaggacccttgctgtctcctttacagGGATTCCATGGCCAGTGTTTTGGCGCAGAGTTTGTGGAAGCGATAAAAGATTCTACTCCAGTGGATAAAACCAAGCTGGATCCTAATAAAgtaagtcatgattcacattgggtaatcttgctcaagatctttaagtgact Alignment from Pairagon GGATTTTATGGCCAGTGTTTCGGTGCAGAGTTTGTGGAAGTGATAAAAGACTCTACTCCAGTGGACAAAACCAAGTTGGATCCTAACAAG atctgtcttgtactcttactggttgaggacccttgctgtctcctttacagGGATTCCATGGCCAGTGTTTTGGCGCAGAGTTTGTGGAAGCGATAAAAGATTCTACTCCAGTGGATAAAACCAAGCTGGATCCTAATAAAgtaagtcatgattcacattgggtaatcttgctcaagatctttaagtgact Alignment from Exonerate_protein2genome GGATTTTATGGCCAGTGTTTCGGTGCAGAGTTTGTGGAAGTGATAAAAGACTCTACTCCAGTGGACAAAACCAAGTTGGATCCTAACAAG atctgtcttgtactcttactggttgaggacccttgctgtctcctttacagGGATTCCATGGCCAGTGTTTTGGCGCAGAGTTTGTGGAAGCGATAAAAGATTCTACTCCAGTGGATAAAACCAAGCTGGATCCTAATAAAgtaagtcatgattcacattgggtaatcttgctcaagatctttaagtgact Alignment from Exonerate_coding2genome GGATTTTATGGCCAGTGTTTCGGTGCAGAGTTTGTGGAAGTGATAAAAGACTCTACTCCAGTGGACAAAACCAAGTTGGATCCTAACAAG atctgtcttgtactcttactggttgaggacccttgctgtctcctttacagGGATTCCATGGCCAGTGTTTTGGCGCAGAGTTTGTGGAAGCGATAAAAGATTCTACTCCAGTGGATAAAACCAAGCTGGATCCTAATAAAgtaagtcatgattcacattgggtaatcttgctcaagatctttaagtgact Alignment from GeneWise GGATTTTATGGCCAGTGTTTCGGTGCAGAGTTTGTGGAAGTGATAAAAGACTCTACTCCAGTGGACAAAACCAAGTTGGATCCTAACAAG atctgtcttgtactcttactggttgaggacccttgctgtctcctttacagGGATTCCATGGCCAGTGTTTTGGCGCAGAGTTTGTGGAAGCGATAAAAGATTCTACTCCAGTGGATAAAACCAAGCTGGATCCTAATAAAgtaagtcatgattcacattgggtaatcttgctcaagatctttaagtgact #### Dpcd_ID9496_3 --> 2 - 0 Original Alignment tgAGGAAGTGGCGTGTGAAAAATGCCCTGGGAGCCTTGGGCCAGTGGCAGCTTGAAGTGGGAGAGCCAGTGCCCTCAGGAGCTGGGAGCCTGGGATCCGAGCTCATCAAAGAAAGTAATGCCAAT tgctgcttttgtgcctttcccatgagctccatgtgcttttttgatttaagtgCGAAAGTGGCGTGTTAAAAATGCCCTGGGGGCCCTTGGTCAGTGGCAGCTTGAAGTGGGTGAGCCAGTACCCTCAGGAACTGGTAGCCTGGGACCCAAGCTCATCAAAGAGAGTAATGCTAAAgtagaggtgtctgttcaaggggataaaaaccagctcactgaagaccccag Alignment from CESAR tgAGGAAGTGGCGTGTGAAAAATGCCCTGGGAGCCTTGGGCCAGTGGCAGCTTGAAGTGGGAGAGCCAGTGCCCTCAGGAGCTGGGAGCCTGGGATCCGAGCTCATCAAAGAAAGTAATGCCAAT tgctgcttttgtgcctttcccatgagctccatgtgcttttttgatttaagtgCGAAAGTGGCGTGTTAAAAATGCCCTGGGGGCCCTTGGTCAGTGGCAGCTTGAAGTGGGTGAGCCAGTACCCTCAGGAACTGGTAGCCTGGGACCCAAGCTCATCAAAGAGAGTAATGCTAAAgtagaggtgtctgttcaaggggataaaaaccagctcactgaagaccccag Alignment from Spaln_aa2Genome TGAGGAAGTGGCGTGTGAAAAATGCCCTGGGAGCCTTGGGCCAGTGGCAGCTTGAAGTGGGAGAGCCAGTGCCCTCAGGAGCTGGGAGCCTGGGATCCGAGCTCATCAAAGAAAGTAATGCCAAT tgctgcttttgtgcctttcccatgagctccatgtgcttttttgatttaagTGCGAAAGTGGCGTGTTAAAAATGCCCTGGGGGCCCTTGGTCAGTGGCAGCTTGAAGTGGGTGAGCCAGTACCCTCAGGAACTGGTAGCCTGGGACCCAAGCTCATCAAAGAGAGTAATGCTAAAgtagaggtgtctgttcaaggggataaaaaccagctcactgaagaccccag Alignment from Spaln_nt2Genome TGAGGAAGTGGCGTGTGAAAAATGCCCTGGGAGCCTTGGGCCAGTGGCAGCTTGAAGTGGGAGAGCCAGTGCCCTCAGGAGCTGGGAGCCTGGGATCCGAGCTCATCAAAGAAAGTAATGCCAAT tgctgcttttgtgcctttcccatgagctccatgtgcttttttgatttaagTGCGAAAGTGGCGTGTTAAAAATGCCCTGGGGGCCCTTGGTCAGTGGCAGCTTGAAGTGGGTGAGCCAGTACCCTCAGGAACTGGTAGCCTGGGACCCAAGCTCATCAAAGAGAGTAATGCTAAAgtagaggtgtctgttcaaggggataaaaaccagctcactgaagaccccag Alignment from Pairagon TGAGGAAGTGGCGTGTGAAAAATGCCCTGGGAGCCTTGGGCCAGTGGCAGCTTGAAGTGGGAGAGCCAGTGCCCTCAGGAGCTGGGAGCCTGGGATCCGAGCTCATCAAAGAAAGTAATGCCAAT tgctgcttttgtgcctttcccatgagctccatgtgcttttttgatttaagTGCGAAAGTGGCGTGTTAAAAATGCCCTGGGGGCCCTTGGTCAGTGGCAGCTTGAAGTGGGTGAGCCAGTACCCTCAGGAACTGGTAGCCTGGGACCCAAGCTCATCAAAGAGAGTAATGCTAAAgtagaggtgtctgttcaaggggataaaaaccagctcactgaagaccccag Alignment from Exonerate_protein2genome TGAGGAAGTGGCGTGTGAAAAATGCCCTGGGAGCCTTGGGCCAGTGGCAGCTTGAAGTGGGAGAGCCAGTGCCCTCAGGAGCTGGGAGCCTGGGATCCGAGCTCATCAAAGAAAGTAATGCCAAT tgctgcttttgtgcctttcccatgagctccatgtgcttttttgatttaagTGCGAAAGTGGCGTGTTAAAAATGCCCTGGGGGCCCTTGGTCAGTGGCAGCTTGAAGTGGGTGAGCCAGTACCCTCAGGAACTGGTAGCCTGGGACCCAAGCTCATCAAAGAGAGTAATGCTAAAgtagaggtgtctgttcaaggggataaaaaccagctcactgaagaccccag Alignment from Exonerate_coding2genome TGAGGAAGTGGCGTGTGAAAAATGCCCTGGGAGCCTTGGGCCAGTGGCAGCTTGAAGTGGGAGAGCCAGTGCCCTCAGGAGCTGGGAGCCTGGGATCCGAGCTCATCAAAGAAAGTAATGCCAAT tgctgcttttgtgcctttcccatgagctccatgtgcttttttgatttaagTGCGAAAGTGGCGTGTTAAAAATGCCCTGGGGGCCCTTGGTCAGTGGCAGCTTGAAGTGGGTGAGCCAGTACCCTCAGGAACTGGTAGCCTGGGACCCAAGCTCATCAAAGAGAGTAATGCTAAAgtagaggtgtctgttcaaggggataaaaaccagctcactgaagaccccag Alignment from GeneWise TGAGGAAGTGGCGTGTGAAAAATGCCCTGGGAGCCTTGGGCCAGTGGCAGCTTGAAGTGGGAGAGCCAGTGCCCTCAGGAGCTGGGAGCCTGGGATCCGAGCTCATCAAAGAAAGTAATGCCAAT tgctgcttttgtgcctttcccatgagctccatgtgcttttttgatttaagTGCGAAAGTGGCGTGTTAAAAATGCCCTGGGGGCCCTTGGTCAGTGGCAGCTTGAAGTGGGTGAGCCAGTACCCTCAGGAACTGGTAGCCTGGGACCCAAGCTCATCAAAGAGAGTAATGCTAAAgtagaggtgtctgttcaaggggataaaaaccagctcactgaagaccccag #### Dpf2_ID1311_3 --> 2 - 1 Original Alignment gaTTGGCCTCTGGACAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAGGATCCCAGGCTTTCTTTCCCATCGATTAAACCAg ccttttagtctttgtgtcagtgttcaatctctgagaacttccctcccaaggcCTACCTTCAGGCCAGTTATACTCATATCCCACTAGATGTTGGCGGAAAAAGCACCGAGCACACCCACCTGAAGATCCCTGGTTTTCTTTTCCATCCATCAAGCCTggtgagactgccactcaatacaagcctttaagaacctcagattatactacc Alignment from CESAR gaTTGGCCTCTGGACAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAGGATCCCAGGCTTTCTTTCCCATCGATTAAACCAg ccttttagtctttgtgtcagtgttcaatctctgagaacttccctcccaaggcCTACCTTCAGGCCAGTTATACTCATATCCCACTAGATGTTGGCGGAAAAAGCACCGAGCACACCCACCTGAAGATCCCTGGTTTTCTTTTCCATCCATCAAGCCTggtgagactgccactcaatacaagcctttaagaacctcagattatactacc Alignment from Spaln_aa2Genome GATTGGCCTCTGGACAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAGGATCCCAGGCTTTCTTTCCCATCGATTAAACCAG ccttttagtctttgtgtcagtgttcaatctctgagaacttccctcccaagGCCTACCTTCAGGCCAGTTATACTCATATCCCACTAGATGTTGGCGGAAAAAGCACCGAGCACACCCACCTGAAGATCCCTGGTTTTCTTTTCCATCCATCAAGCCTGgtgagactgccactcaatacaagcctttaagaacctcagattatactacc Alignment from Spaln_nt2Genome GATTGGCCTCTGGACAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAGGATCCCAGGCTTTCTTTCCCATCGATTAAACCAG ccttttagtctttgtgtcagtgttcaatctctgagaacttccctcccaagGCCTACCTTCAGGCCAGTTATACTCATATCCCACTAGATGTTGGCGGAAAAAGCACCGAGCACACCCACCTGAAGATCCCTGGTTTTCTTTTCCATCCATCAAGCCTGgtgagactgccactcaatacaagcctttaagaacctcagattatactacc Alignment from Pairagon GATTGGCCTCTGGACAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAGGATCCCAGGCTTTCTTTCCCATCGATTAAACCAG ccttttagtctttgtgtcagtgttcaatctctgagaacttccctcccaaggcctaccttcag------------GCCAGTTATACTCATATCCCACTAGATGTTGGCGGAAAAAGCACCGAGCACACCCACCTGAAGATCCCTGGTTTTCTTTTCCATCCATCAAGCCTGgtgagactgccactcaatacaagcctttaagaacctcagattatactacc Alignment from Exonerate_protein2genome GATTGGCCTCTGGACAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAGGATCCCAGGCTTTCTTTCCCATCGATTAAACCAG ccttttagtctttgtgtcagtgttcaatctctgagaacttccctcccaagGCCTACCTTCAGGCCAGTTATACTCATATCCCACTAGATGTTGGCGGAAAAAGCACCGAGCACACCCACCTGAAGATCCCTGGTTTTCTTTTCCATCCATCAAGCCTGgtgagactgccactcaatacaagcctttaagaacctcagattatactacc Alignment from Exonerate_coding2genome GATTGGCCTCTGGACAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAGGATCCCAGGCTTTCTTTCCCATCGATTAAACCAG ccttttagtctttgtgtcagtgttcaatctctgagaacttccctcccaagGCCTACCTTCAGGCCAGTTATACTCATATCCCACTAGATGTTGGCGGAAAAAGCACCGAGCACACCCACCTGAAGATCCCTGGTTTTCTTTTCCATCCATCAAGCCTGgtgagactgccactcaatacaagcctttaagaacctcagattatactacc Alignment from GeneWise GATTGGCCTCTGGACAGTTATACTCCTATCCTGCCAGACGCTGGCGGAAAAAGCGCCGAGCCCACCCACCTGAGGATCCCAGGCTTTCTTTCCCATCGATTAAACCAG ccttttagtctttgtgtcagtgttcaatctctgagaacttccctcccaagGCCTACCTTCAGGCCAGTTATACTCATATCCCACTAGATGTTGGCGGAAAAAGCACCGAGCACACCCACCTGAAGATCCCTGGTTTTCTTTTCCATCCATCAAGCCTGgtgagactgccactcaatacaagcctttaagaacctcagattatactacc #### Dpp3_ID738_15 --> 0 - 0 Original Alignment GCCCACATGCAGGCCCGGTTTGTGATCCTGCGGGTTTTGCTGGAAGCTGGC------GAAGGACTCGTTACCGTCACTCCCACCACAGGCTCTGATGGGCGCCCTGATGCCCGGGTCCGCCTGGACCGCAGCAAGATCCGGTCAGTGGGCAGACCTGCCTTGGAG------CGGTTCCTGCGGAGACTCCAG tctacatgaaggtgcaacttgggatagctcatcatttttctttctcctagTCTCATATGCAGGCCCGGTTTGTTATACTACGCATCTTGGTGGAAGCTGGTGAAGGTGAAGGGCTGGTCACTGTCACTCCAACCACAGGATTGGATGGGTGCCCTGATGCTTGGGTGTGCTTGGAACACAGTGAGATTGGATCAGTGGGTAGGGCTGCCCTAGAGCGTATCTGTATCTTGTGGAGACTACAGgtaaaattcagagattatgccatggtccctgtactccaattgtgtgtgga Alignment from CESAR GCCCACATGCAGGCCCGGTTTGTGATCCTGCGGGTTTTGCTGGAAGCTGGCGAA------GGACTCGTTACCGTCACTCCCACCACAGGCTCTGATGGGCGCCCTGATGCCCGGGTCCGCCTGGACCGCAGCAAGATCCGGTCAGTGGGCAGACCTGCCTTGGAGCGGTTC------CTGCGGAGACTCCAG tctacatgaaggtgcaacttgggatagctcatcatttttctttctcctagTCTCATATGCAGGCCCGGTTTGTTATACTACGCATCTTGGTGGAAGCTGGTGAAGGTGAAGGGCTGGTCACTGTCACTCCAACCACAGGATTGGATGGGTGCCCTGATGCTTGGGTGTGCTTGGAACACAGTGAGATTGGATCAGTGGGTAGGGCTGCCCTAGAGCGTATCTGTATCTTGTGGAGACTACAGgtaaaattcagagattatgccatggtccctgtactccaattgtgtgtgga Alignment from Spaln_aa2Genome GCCCACATGCAGGCCCGGTTTGTGATCCTGCGGGTTTTGCTGGAAGCT------GGCGAAGGACTCGTTACCGTCACTCCCACCACAGGCTCTGATGGGCGCCCTGATGCCCGGGTCCGCCTGGACCGCAGCAAGATCCGGTCAGTGGGCAGACCTGCCTTGGAGCGG------TTCCTGCGGAGACTCCAG tctacatgaaggtgcaacttgggatagctcatcatttttctttctcctagTCTCATATGCAGGCCCGGTTTGTTATACTACGCATCTTGGTGGAAGCTGGTGAAGGTGAAGGGCTGGTCACTGTCACTCCAACCACAGGATTGGATGGGTGCCCTGATGCTTGGGTGTGCTTGGAACACAGTGAGATTGGATCAGTGGGTAGGGCTGCCCTAGAGCGTATCTGTATCTTGTGGAGACTACAGgtaaaattcagagattatgccatggtccctgtactccaattgtgtgtgga Alignment from Spaln_nt2Genome GCCCACATGCAGGCCCGGTTTGTGATCCTGCGGGTTTTGCTGGAAGCTGGCGAAGGA------CTCGTTACCGTCACTCCCACCACAGGCTCTGATGGGCGCCCTGATGCCCGGGTCCGCCTGGACCGCAGCAAGATCCGGTCAGTGGGCAGACCTGCCTTGGAGCG-----GT-TCCTGCGGAGACTCCAG tctacatgaaggtgcaacttgggatagctcatcatttttctttctcctagTCTCATATGCAGGCCCGGTTTGTTATACTACGCATCTTGGTGGAAGCTGGTGAAGGTGAAGGGCTGGTCACTGTCACTCCAACCACAGGATTGGATGGGTGCCCTGATGCTTGGGTGTGCTTGGAACACAGTGAGATTGGATCAGTGGGTAGGGCTGCCCTAGAGCGTATCTGTATCTTGTGGAGACTACAGgtaaaattcagagattatgccatggtccctgtactccaattgtgtgtgga Alignment from Pairagon GCCCACATGCAGGCCCGGTTTGTGATCCTGCGGGTTTTGCTGGAAGCT------GGCGAAGGACTCGTTACCGTCACTCCCACCACAGGCTCTGATGGGCGCCCTGATGCCCGGGTCCGCCTGGACCGCAGCAAGATCCGGTCAGTGGGCAGACCTGCCTTGGAGC------GGTTCCTGCGGAGACTCCAG tctacatgaaggtgcaacttgggatagctcatcatttttctttctcctagTCTCATATGCAGGCCCGGTTTGTTATACTACGCATCTTGGTGGAAGCTGGTGAAGGTGAAGGGCTGGTCACTGTCACTCCAACCACAGGATTGGATGGGTGCCCTGATGCTTGGGTGTGCTTGGAACACAGTGAGATTGGATCAGTGGGTAGGGCTGCCCTAGAGCGTATCTGTATCTTGTGGAGACTACAGgtaaaattcagagattatgccatggtccctgtactccaattgtgtgtgga Alignment from Exonerate_protein2genome GCCCACATGCAGGCCCGGTTTGTGATCCTGCGGGTTTTGCTGGAAGCT------GGCGAAGGACTCGTTACCGTCACTCCCACCACAGGCTCTGATGGGCGCCCTGATGCCCGGGTCCGCCTGGACCGCAGCAAGATCCGGTCAGTGGGCAGACCTGCCTTGGAGCGG------TTCCTGCGGAGACTCCAG tctacatgaaggtgcaacttgggatagctcatcatttttctttctcctagTCTCATATGCAGGCCCGGTTTGTTATACTACGCATCTTGGTGGAAGCTGGTGAAGGTGAAGGGCTGGTCACTGTCACTCCAACCACAGGATTGGATGGGTGCCCTGATGCTTGGGTGTGCTTGGAACACAGTGAGATTGGATCAGTGGGTAGGGCTGCCCTAGAGCGTATCTGTATCTTGTGGAGACTACAGgtaaaattcagagattatgccatggtccctgtactccaattgtgtgtgga Alignment from Exonerate_coding2genome GCCCACATGCAGGCCCGGTTTGTGATCCTGCGGGTTTTGCTGGAAGCT------GGCGAAGGACTCGTTACCGTCACTCCCACCACAGGCTCTGATGGGCGCCCTGATGCCCGGGTCCGCCTGGACCGCAGCAAGATCCGGTCAGTGGGCAGACCTGCCTTGGAGCGG------TTCCTGCGGAGACTCCAG tctacatgaaggtgcaacttgggatagctcatcatttttctttctcctagTCTCATATGCAGGCCCGGTTTGTTATACTACGCATCTTGGTGGAAGCTGGTGAAGGTGAAGGGCTGGTCACTGTCACTCCAACCACAGGATTGGATGGGTGCCCTGATGCTTGGGTGTGCTTGGAACACAGTGAGATTGGATCAGTGGGTAGGGCTGCCCTAGAGCGTATCTGTATCTTGTGGAGACTACAGgtaaaattcagagattatgccatggtccctgtactccaattgtgtgtgga Alignment from GeneWise GCCCACATGCAGGCCCGGTTTGTGATCCTGCGGGTTTTGCTGGAAGCT------GGCGAAGGACTCGTTACCGTCACTCCCACCACAGGCTCTGATGGGCGCCCTGATGCCCGGGTCCGCCTGGACCGCAGCAAGATCCGGTCAGTGGGCAGACCTGCCTTGGAGCGGTTC------CTGCGGAGACTCCAG tctacatgaaggtgcaacttgggatagctcatcatttttctttctcctagTCTCATATGCAGGCCCGGTTTGTTATACTACGCATCTTGGTGGAAGCTGGTGAAGGTGAAGGGCTGGTCACTGTCACTCCAACCACAGGATTGGATGGGTGCCCTGATGCTTGGGTGTGCTTGGAACACAGTGAGATTGGATCAGTGGGTAGGGCTGCCCTAGAGCGTATCTGTATCTTGTGGAGACTACAGgtaaaattcagagattatgccatggtccctgtactccaattgtgtgtgga #### Dpp3_ID739_14 --> 1 - 0 Original Alignment gATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTC---TACACCCCAGAGGCAGCCAACTGGCGACAG taagaaaactctccaaattcatgggatttcatcctctttttctgccacaggGTATTTGGCTACGAGGGAACAGACTCAGAT---GTTATCTATGTGAACTGGCTGAATAAGGTCCAGTCAGGCTTATCTGCTTTGGATTTTCAGCACACACCAAAGGCAGCCAACTGGCAGCAGgtaaggaacagtacaggcacatccctcaaggacaggtgaacttagatagt Alignment from CESAR gATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTC---TACACCCCAGAGGCAGCCAACTGGCGACAG taggaaaactctccaaattcatgggatttcatcctctttttctgccacaggGTATTTGGCTACGAGGGAACAGACTCA---GATGTTATCTATGTGAACTGGCTGAATAAGGTCCAGTCAGGCTTATCTGCTTTGGATTTTCAGCACACACCAAAGGCAGCCAACTGGCAGCAGgtaaggaacagtacaggcacatccctcaaggacaggtgaacttagatagt Alignment from Spaln_aa2Genome GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTC---TACACCCCAGAGGCAGCCAACTGGCGACAG taagaaaactctccaaattcatgggatttcatcctctttttctgccacagGGTATTTGGCTACGAGGGAACAGACTCA---GATGTTATCTATGTGAACTGGCTGAATAAGGTCCAGTCAGGCTTATCTGCTTTGGATTTTCAGCACACACCAAAGGCAGCCAACTGGCAGCAGgtaaggaacagtacaggcacatccctcaaggacaggtgaacttagatagt Alignment from Spaln_nt2Genome GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTA---CACCCCAGAGGCAGCCAACTGGCGACAG taagaaaactctccaaattcatgggatttcatcctctttttctgccacagGGTATTTGGCTACGAGGGAACAGACTC---AGATGTTATCTATGTGAACTGGCTGAATAAGGTCCAGTCAGGCTTATCTGCTTTGGATTTTCAGCACACACCAAAGGCAGCCAACTGGCAGCAGgtaaggaacagtacaggcacatccctcaaggacaggtgaacttagatagt Alignment from Pairagon GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTC---TACACCCCAGAGGCAGCCAACTGGCGACAG taagaaaactctccaaattcatgggatttcatcctctttttctgccacagGGTATTTGGCTACGAGGGAACAGACTC---AGATGTTATCTATGTGAACTGGCTGAATAAGGTCCAGTCAGGCTTATCTGCTTTGGATTTTCAGCACACACCAAAGGCAGCCAACTGGCAGCAGgtaaggaacagtacaggcacatccctcaaggacaggtgaacttagatagt Alignment from Exonerate_protein2genome GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTC---TACACCCCAGAGGCAGCCAACTGGCGACAG taagaaaactctccaaattcatgggatttcatcctctttttctgccacagGGTATTTGGCTACGAGGGAACAGACTCA---GATGTTATCTATGTGAACTGGCTGAATAAGGTCCAGTCAGGCTTATCTGCTTTGGATTTTCAGCACACACCAAAGGCAGCCAACTGGCAGCAGgtaaggaacagtacaggcacatccctcaaggacaggtgaacttagatagt Alignment from Exonerate_coding2genome GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTC---TACACCCCAGAGGCAGCCAACTGGCGACAG taagaaaactctccaaattcatgggatttcatcctctttttctgccacagGGTATTTGGCTACGAGGGAACAGACTCA---GATGTTATCTATGTGAACTGGCTGAATAAGGTCCAGTCAGGCTTATCTGCTTTGGATTTTCAGCACACACCAAAGGCAGCCAACTGGCAGCAGgtaaggaacagtacaggcacatccctcaaggacaggtgaacttagatagt Alignment from GeneWise GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTC---TACACCCCAGAGGCAGCCAACTGGCGACAG taagaaaactctccaaattcatgggatttcatcctctttttctgccacagGGTATTTGGCTACGAGGGAACAGACTCA---GATGTTATCTATGTGAACTGGCTGAATAAGGTCCAGTCAGGCTTATCTGCTTTGGATTTTCAGCACACACCAAAGGCAGCCAACTGGCAGCAGgtaaggaacagtacaggcacatccctcaaggacaggtgaacttagatagt #### Dpp3_ID741_12 --> 0 - 0 Original Alignment GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG gagagccatcccaatagatcaagagtgactgcctttcttatttcctttagGATGAGAAAGGAGCTTTCAATTTTGACGAGGAAACGGTGATCAACCCTGAGACCAGCGAGCAGgtcagtagaacattcgttatgaggaaattgcaattgggtacatggccaag Alignment from CESAR GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG gagagccatcccaatagatcaagagtgactgcctttcttatttcctttagGATGAGAAAGGAGCTTTCAATTTTGACGAGGAAACGGTGATCAACCCTGAGACCAGCGAGCAGgtcagtagaacattcgttatgaggaaattgcaattgggtacatggccaag Alignment from Spaln_aa2Genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG gagagccatcccaatagatcaagagtgactgcctttcttatttcctttagGATGAGAAAGGAGCTTTCAATTTTGACGAGGAAACGGTGATCAACCCTGAGACCAGCGAGCAGgtcagtagaacattcgttatgaggaaattgcaattgggtacatggccaag Alignment from Spaln_nt2Genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG gagagccatcccaatagatcaagagtgactgcctttcttatttcctttagGATGAGAAAGGAGCTTTCAATTTTGACGAGGAAACGGTGATCAACCCTGAGACCAGCGAGCAGgtcagtagaacattcgttatgaggaaattgcaattgggtacatggccaag Alignment from Pairagon GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG gagagccatcccaatagatcaagagtgactgcctttcttatttcctttagGATGAGAAAGGAGCTTTCAATTTTGACGAGGAAACGGTGATCAACCCTGAGACCAGCGAGCAGgtcagtagaacattcgttatgaggaaattgcaattgggtacatggccaag Alignment from Exonerate_protein2genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG gagagccatcccaatagatcaagagtgactgcctttcttatttcctttagGATGAGAAAGGAGCTTTCAATTTTGACGAGGAAACGGTGATCAACCCTGAGACCAGCGAGCAGgtcagtagaacattcgttatgaggaaattgcaattgggtacatggccaag Alignment from Exonerate_coding2genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG gagagccatcccaatagatcaagagtgactgcctttcttatttcctttagGATGAGAAAGGAGCTTTCAATTTTGACGAGGAAACGGTGATCAACCCTGAGACCAGCGAGCAGgtcagtagaacattcgttatgaggaaattgcaattgggtacatggccaag Alignment from GeneWise GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG gagagccatcccaatagatcaagagtgactgcctttcttatttcctttagGATGAGAAAGGAGCTTTCAATTTTGACGAGGAAACGGTGATCAACCCTGAGACCAGCGAGCAGgtcagtagaacattcgttatgaggaaattgcaattgggtacatggccaag #### Dpp3_ID742_11 --> 0 - 0 Original Alignment GACCTGTATATCCGCTGGAAGGGGCCGTCCTTTGATGTGCAGGTGGGGTTACACGAGCTGTTGGGCCATGGCAGCGGCAAGCTCTTTGTACAG aaggttgctacagctggtgtggatagtgcacctgtcctcccccaccgcagGATCTGTATATCCACTGGAAAGGTCCATCATTTGATGTACAGGTGGGCTTACATGAGCTATTAAGCCATGGCAGTGGCAAGCTCTTTGTACAGgtatgtggtcccaaaggtagatcctgttatcagtgctactgatcatggta Alignment from CESAR GACCTGTATATCCGCTGGAAGGGGCCGTCCTTTGATGTGCAGGTGGGGTTACACGAGCTGTTGGGCCATGGCAGCGGCAAGCTCTTTGTACAG aaggttgctacagctggtgtggatagtgcacctgtcctcccccaccgcagGATCTGTATATCCACTGGAAAGGTCCATCATTTGATGTACAGGTGGGCTTACATGAGCTATTAAGCCATGGCAGTGGCAAGCTCTTTGTACAGgtatgtggtcccaaaggtagatcctgttatcagtgctactgatcatggta Alignment from Spaln_aa2Genome GACCTGTATATCCGCTGGAAGGGGCCGTCCTTTGATGTGCAGGTGGGGTTACACGAGCTGTTGGGCCATGGCAGCGGCAAGCTCTTTGTACAG aaggttgctacagctggtgtggatagtgcacctgtcctcccccaccgcagGATCTGTATATCCACTGGAAAGGTCCATCATTTGATGTACAGGTGGGCTTACATGAGCTATTAAGCCATGGCAGTGGCAAGCTCTTTGTACAGgtatgtggtcccaaaggtagatcctgttatcagtgctactgatcatggta Alignment from Spaln_nt2Genome GACCTGTATATCCGCTGGAAGGGGCCGTCCTTTGATGTGCAGGTGGGGTTACACGAGCTGTTGGGCCATGGCAGCGGCAAGCTCTTTGTACAG aaggttgctacagctggtgtggatagtgcacctgtcctcccccaccgcagGATCTGTATATCCACTGGAAAGGTCCATCATTTGATGTACAGGTGGGCTTACATGAGCTATTAAGCCATGGCAGTGGCAAGCTCTTTGTACAGgtatgtggtcccaaaggtagatcctgttatcagtgctactgatcatggta Alignment from Pairagon GACCTGTATATCCGCTGGAAGGGGCCGTCCTTTGATGTGCAGGTGGGGTTACACGAGCTGTTGGGCCATGGCAGCGGCAAGCTCTTTGTACAG aaggttgctacagctggtgtggatagtgcacctgtcctcccccaccgcagGATCTGTATATCCACTGGAAAGGTCCATCATTTGATGTACAGGTGGGCTTACATGAGCTATTAAGCCATGGCAGTGGCAAGCTCTTTGTACAGgtatgtggtcccaaaggtagatcctgttatcagtgctactgatcatggta Alignment from Exonerate_protein2genome GACCTGTATATCCGCTGGAAGGGGCCGTCCTTTGATGTGCAGGTGGGGTTACACGAGCTGTTGGGCCATGGCAGCGGCAAGCTCTTTGTACAG aaggttgctacagctggtgtggatagtgcacctgtcctcccccaccgcagGATCTGTATATCCACTGGAAAGGTCCATCATTTGATGTACAGGTGGGCTTACATGAGCTATTAAGCCATGGCAGTGGCAAGCTCTTTGTACAGgtatgtggtcccaaaggtagatcctgttatcagtgctactgatcatggta Alignment from Exonerate_coding2genome GACCTGTATATCCGCTGGAAGGGGCCGTCCTTTGATGTGCAGGTGGGGTTACACGAGCTGTTGGGCCATGGCAGCGGCAAGCTCTTTGTACAG aaggttgctacagctggtgtggatagtgcacctgtcctcccccaccgcagGATCTGTATATCCACTGGAAAGGTCCATCATTTGATGTACAGGTGGGCTTACATGAGCTATTAAGCCATGGCAGTGGCAAGCTCTTTGTACAGgtatgtggtcccaaaggtagatcctgttatcagtgctactgatcatggta Alignment from GeneWise GACCTGTATATCCGCTGGAAGGGGCCGTCCTTTGATGTGCAGGTGGGGTTACACGAGCTGTTGGGCCATGGCAGCGGCAAGCTCTTTGTACAG aaggttgctacagctggtgtggatagtgcacctgtcctcccccaccgcagGATCTGTATATCCACTGGAAAGGTCCATCATTTGATGTACAGGTGGGCTTACATGAGCTATTAAGCCATGGCAGTGGCAAGCTCTTTGTACAGgtatgtggtcccaaaggtagatcctgttatcagtgctactgatcatggta #### Dpp3_ID743_10 --> 2 - 0 Original Alignment acGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaatatagtccactcctgcatttctttctttcccccaaagacGATGACCTGAGACAGACAGAAGGCTTTAAGAACGTATCACTGGGGAATGTGCTGGCTGTCGCCTATGCTGCAAAGCGAGAGAAGCTAACATTTTTGGAGGAGGAAGACAAGgtaagaatggccccccaagcttatggtgttgtacttggcaaaataggcta Alignment from CESAR acGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaatatagtccactcctgcatttctttctttcccccaaagacGATGACCTGAGACAGACAGAAGGCTTTAAGAACGTATCACTGGGGAATGTGCTGGCTGTCGCCTATGCTGCAAAGCGAGAGAAGCTAACATTTTTGGAGGAGGAAGACAAGgtaagaatggccccccaagcttatggtgttgtacttggcaaaataggcta Alignment from Spaln_aa2Genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaatatagtccactcctgcatttctttctttcccccaaagACGATGACCTGAGACAGACAGAAGGCTTTAAGAACGTATCACTGGGGAATGTGCTGGCTGTCGCCTATGCTGCAAAGCGAGAGAAGCTAACATTTTTGGAGGAGGAAGACAAGgtaagaatggccccccaagcttatggtgttgtacttggcaaaataggcta Alignment from Spaln_nt2Genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaatatagtccactcctgcatttctttctttcccccaaagACGATGACCTGAGACAGACAGAAGGCTTTAAGAACGTATCACTGGGGAATGTGCTGGCTGTCGCCTATGCTGCAAAGCGAGAGAAGCTAACATTTTTGGAGGAGGAAGACAAGgtaagaatggccccccaagcttatggtgttgtacttggcaaaataggcta Alignment from Pairagon ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaatatagtccactcctgcatttctttctttcccccaaagACGATGACCTGAGACAGACAGAAGGCTTTAAGAACGTATCACTGGGGAATGTGCTGGCTGTCGCCTATGCTGCAAAGCGAGAGAAGCTAACATTTTTGGAGGAGGAAGACAAGgtaagaatggccccccaagcttatggtgttgtacttggcaaaataggcta Alignment from Exonerate_protein2genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaatatagtccactcctgcatttctttctttcccccaaagACGATGACCTGAGACAGACAGAAGGCTTTAAGAACGTATCACTGGGGAATGTGCTGGCTGTCGCCTATGCTGCAAAGCGAGAGAAGCTAACATTTTTGGAGGAGGAAGACAAGgtaagaatggccccccaagcttatggtgttgtacttggcaaaataggcta Alignment from Exonerate_coding2genome CCCAACTACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaatatagtccactcctgcatttctttctttccCCCAAAGACGATGACCTGAGACAGACAGAAGGCTTTAAGAACGTATCACTGGGGAATGTGCTGGCTGTCGCCTATGCTGCAAAGCGAGAGAAGCTAACATTTTTGGAGGAGGAAGACAAGgtaagaatggccccccaagcttatggtgttgtacttggcaaaataggcta Alignment from GeneWise ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaatatagtccactcctgcatttctttctttcccccaaagACGATGACCTGAGACAGACAGAAGGCTTTAAGAACGTATCACTGGGGAATGTGCTGGCTGTCGCCTATGCTGCAAAGCGAGAGAAGCTAACATTTTTGGAGGAGGAAGACAAGgtaagaatggccccccaagcttatggtgttgtacttggcaaaataggcta #### Dpp3_ID749_4 --> 0 - 0 Original Alignment GGAGTCACCACCTATTTCTCTGGGGATTGTACCATGGAAGATGCTAAGCTGGCCCAGGACTTTCTGGACTCTCAG ttgtcagtattaacatgcaattctctcctctcctctctgggcctttgcagGGAGTCATCACCTATCTTTCTGGAGATTGTACCAAAGAAGATGCCAAGCTGGCTCAGGATTTCCTGGACTCTCGTgtaaaggttcagaattgggatgctggcttaacatcttccaattgggtgtc Alignment from CESAR GGAGTCACCACCTATTTCTCTGGGGATTGTACCATGGAAGATGCTAAGCTGGCCCAGGACTTTCTGGACTCTCAG ttgtcagtattaacatgcaattctctcctctcctctctgggcctttgcagGGAGTCATCACCTATCTTTCTGGAGATTGTACCAAAGAAGATGCCAAGCTGGCTCAGGATTTCCTGGACTCTCGTgtaaaggttcagaattgggatgctggcttaacatcttccaattgggtgtc Alignment from Spaln_aa2Genome GGAGTCACCACCTATTTCTCTGGGGATTGTACCATGGAAGATGCTAAGCTGGCCCAGGACTTTCTGGACTCTCAG ttgtcagtattaacatgcaattctctcctctcctctctgggcctttgcagGGAGTCATCACCTATCTTTCTGGAGATTGTACCAAAGAAGATGCCAAGCTGGCTCAGGATTTCCTGGACTCTCGTgtaaaggttcagaattgggatgctggcttaacatcttccaattgggtgtc Alignment from Spaln_nt2Genome GGAGTCACCACCTATTTCTCTGGGGATTGTACCATGGAAGATGCTAAGCTGGCCCAGGACTTTCTGGACTCTCAG ttgtcagtattaacatgcaattctctcctctcctctctgggcctttgcagGGAGTCATCACCTATCTTTCTGGAGATTGTACCAAAGAAGATGCCAAGCTGGCTCAGGATTTCCTGGACTCTCGTgtaaaggttcagaattgggatgctggcttaacatcttccaattgggtgtc Alignment from Pairagon GGAGTCACCACCTATTTCTCTGGGGATTGTACCATGGAAGATGCTAAGCTGGCCCAGGACTTTCTGGACTCTCAG ttgtcagtattaacatgcaattctctcctctcctctctgggcctttgcagGGAGTCATCACCTATCTTTCTGGAGATTGTACCAAAGAAGATGCCAAGCTGGCTCAGGATTTCCTGGACTCTCGTgtaaaggttcagaattgggatgctggcttaacatcttccaattgggtgtc Alignment from Exonerate_protein2genome GGAGTCACCACCTATTTCTCTGGGGATTGTACCATGGAAGATGCTAAGCTGGCCCAGGACTTTCTGGACTCTCAG ttgtcagtattaacatgcaattctctcctctcctctctgggcctttgcagGGAGTCATCACCTATCTTTCTGGAGATTGTACCAAAGAAGATGCCAAGCTGGCTCAGGATTTCCTGGACTCTCGTgtaaaggttcagaattgggatgctggcttaacatcttccaattgggtgtc Alignment from Exonerate_coding2genome ttgtcagtattaacatgcaattctctcctctcctctctgggcctttgcagggagtcatcacctatctttctggagattgtaccaaagaagatgccaagctggctcaggatttcctggactctcgtgtaaaggttcagaattgggatgctggcttaacatcttccaattgggtgtc Alignment from GeneWise GGAGTCACCACCTATTTCTCTGGGGATTGTACCATGGAAGATGCTAAGCTGGCCCAGGACTTTCTGGACTCTCAG ttgtcagtattaacatgcaattctctcctctcctctctgggcctttgcagGGAGTCATCACCTATCTTTCTGGAGATTGTACCAAAGAAGATGCCAAGCTGGCTCAGGATTTCCTGGACTCTCGTgtaaaggttcagaattgggatgctggcttaacatcttccaattgggtgtc #### Drap1_ID985_5 --> 1 - 0 Original Alignment CCTCGAag gGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAaggtgagtggctagggacctgctaaccatgcactttcttcctagaGGCTGTAAACCAGGTAGCAGTGGAAAGAAAAATGGCGGCACAGGAAGCAAGGGTAAAGATAAAAAGCTCTCTGGGACAGATTCCGAACAAGAGgtaactggactagctagtgatgagttatggtttttgtagccaagctaatt Alignment from CESAR CCTCGAag gGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAaggcaagtggctagggacctgctaaccatgcactttcttcctagaGGCTGTAAACCAGGTAGCAGTGGAAAGAAAAATGGCGGCACAGGAAGCAAGGGTAAAGATAAAAAGCTCTCTGGGACAGATTCCGAACAAGAGgtaactggactagctagtgatgagttatggtttttgtagccaagctaatt Alignment from Spaln_aa2Genome CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtgagtggctagggacctgctaaccatgcactttcttcctagAGGCTGTAAACCAGGTAGCAGTGGAAAGAAAAATGGCGGCACAGGAAGCAAGGGTAAAGATAAAAAGCTCTCTGGGACAGATTCCGAACAAGAGgtaactggactagctagtgatgagttatggtttttgtagccaagctaatt Alignment from Spaln_nt2Genome CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtgagtggctagggacctgctaaccatgcactttcttcctagAGGCTGTAAACCAGGTAGCAGTGGAAAGAAAAATGGCGGCACAGGAAGCAAGGGTAAAGATAAAAAGCTCTCTGGGACAGATTCCGAACAAGAGgtaactggactagctagtgatgagttatggtttttgtagccaagctaatt Alignment from Pairagon CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtgagtggctagggacctgctaaccatgcactttcttcctagAGGCTGTAAACCAGGTAGCAGTGGAAAGAAAAATGGCGGCACAGGAAGCAAGGGTAAAGATAAAAAGCTCTCTGGGACAGATTCCGAACAAGAGgtaactggactagctagtgatgagttatggtttttgtagccaagctaatt Alignment from Exonerate_protein2genome CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtgagtggctagggacctgctaaccatgcactttcttcctagAGGCTGTAAACCAGGTAGCAGTGGAAAGAAAAATGGCGGCACAGGAAGCAAGGGTAAAGATAAAAAGCTCTCTGGGACAGATTCCGAACAAGAGgtaactggactagctagtgatgagttatggtttttgtagccaagctaatt Alignment from Exonerate_coding2genome CCTCGAAGG------GGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAGGATGAGTCT---GAGGATACAGATACTGATGGGGAA CCTCGAAGGTGAGTGGCTAGGGACCTGCTAACCATGCACTTTCTTCCTAGAGGCTGTAAACCAGGTAGCAGTGGAAAGAAAAATGGCGGCACAGGAAGCAAGGGTAAAGATAAAAAGCTCTCTGGGACAGATTCCGAACAAGAGgtaactggactagctagtgatgagttatggtttttgtagccaagctaatt Alignment from GeneWise CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtgagtggctagggacctgctaaccatgcactttcttcctagAGGCTGTAAACCAGGTAGCAGTGGAAAGAAAAATGGCGGCACAGGAAGCAAGGGTAAAGATAAAAAGCTCTCTGGGACAGATTCCGAACAAGAGgtaactggactagctagtgatgagttatggtttttgtagccaagctaatt #### Drap1_ID988_2 --> 0 - 1 Original Alignment GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCt tgcttcccccatgtgttgggagtacagtcaacactcccttgtgcccacagACGCGGATCACAAAGATCATGCAGACAGATGAAGAAATTGGAAAAGTTGCAGCTGCTGTACCAGTCATCATTtgtaccaacctcaagcccagttattctgaggtggaattataccacaccatg Alignment from CESAR GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCt tgcttcccccatgtgttgggagtacagtcaacactcccttgtgcccacagACGCGGATCACAAAGATCATGCAGACAGATGAAGAAATTGGAAAAGTTGCAGCTGCTGTACCAGTCATCATTtgtaccaacctcaagcccagttattctgaggtggaattataccacaccaca Alignment from Spaln_aa2Genome GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT tgcttcccccatgtgttgggagtacagtcaacactcccttgtgcccacagACGCGGATCACAAAGATCATGCAGACAGATGAAGAAATTGGAAAAGTTGCAGCTGCTGTACCAGTCATCATTTgtaccaacctcaagcccagttattctgaggtggaattataccacaccatg Alignment from Spaln_nt2Genome GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT tgcttcccccatgtgttgggagtacagtcaacactcccttgtgcccacagACGCGGATCACAAAGATCATGCAGACAGATGAAGAAATTGGAAAAGTTGCAGCTGCTGTACCAGTCATCATTTgtaccaacctcaagcccagttattctgaggtggaattataccacaccatg Alignment from Pairagon GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT tgcttcccccatgtgttgggagtacagtcaacactcccttgtgcccacagACGCGGATCACAAAGATCATGCAGACAGATGAAGAAATTGGAAAAGTTGCAGCTGCTGTACCAGTCATCATTTgtaccaacctcaagcccagttattctgaggtggaattataccacaccatg Alignment from Exonerate_protein2genome GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT tgcttcccccatgtgttgggagtacagtcaacactcccttgtgcccacagACGCGGATCACAAAGATCATGCAGACAGATGAAGAAATTGGAAAAGTTGCAGCTGCTGTACCAGTCATCATTTgtaccaacctcaagcccagttattctgaggtggaattataccacaccatg Alignment from Exonerate_coding2genome CCGCCGGCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT tgcttcccccatgtgttgggagtacagtcaacactcccttgtgcCCACAGACGCGGATCACAAAGATCATGCAGACAGATGAAGAAATTGGAAAAGTTGCAGCTGCTGTACCAGTCATCATTTgtaccaacctcaagcccagttattctgaggtggaattataccacaccatg Alignment from GeneWise GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT tgcttcccccatgtgttgggagtacagtcaacactcccttgtgcccacagACGCGGATCACAAAGATCATGCAGACAGATGAAGAAATTGGAAAAGTTGCAGCTGCTGTACCAGTCATCATTTgtaccaacctcaagcccagttattctgaggtggaattataccacaccatg #### Dusp5_ID11303_3 --> 0 - 1 Original Alignment GGTGGCCCGGTTGAAATCCTTCCCTTCCTCTACCTTGGAAGTGCCTACCACGCATCCAAGTGCGAGTTCCTCGCCAACCTGCACATCACAGCCCTGCTGAATGTTTCCCGCCGGACCTCCGAGGCCTGCACCACCCACCTACACTACAAGTGGATCCCCGTGGAGGACAGCCACACTGCTGACATTAGCTCCCACTTTCAAGAAGCAATAGATTTTATTg agacaggtggattcaaatttcctgttcctttactttttttttccttttagGGCGGTCCAGTAGAAATCCTTCCATTCCTCTACCTTGGAAGTGCCTACCATGCATCTAAGTGTGGCTTCCTTGCCAACCTGCACATCACAGCCCTACTTAATGTTTCACGCCGGACCTCTGAGGCCTGCACAACCCACCTCCACTACAAGTGGATCCCCATTGAGGACAGTCATACTGCTGACATTAGCTCACGCTTTCAAGAGGCAATAGATTTTATTggtgagattacatgcctatgctcatcctgcccacttgatttcaagaaccac Alignment from CESAR GGTGGCCCGGTTGAAATCCTTCCCTTCCTCTACCTTGGAAGTGCCTACCACGCATCCAAGTGCGAGTTCCTCGCCAACCTGCACATCACAGCCCTGCTGAATGTTTCCCGCCGGACCTCCGAGGCCTGCACCACCCACCTACACTACAAGTGGATCCCCGTGGAGGACAGCCACACTGCTGACATTAGCTCCCACTTTCAAGAAGCAATAGATTTTATTg agacaggtggattcaaatttcctgttcctttactttttttttccttttagGGCGGTCCAGTAGAAATCCTTCCATTCCTCTACCTTGGAAGTGCCTACCATGCATCTAAGTGTGGCTTCCTTGCCAACCTGCACATCACAGCCCTACTTAATGTTTCACGCCGGACCTCTGAGGCCTGCACAACCCACCTCCACTACAAGTGGATCCCCATTGAGGACAGTCATACTGCTGACATTAGCTCACGCTTTCAAGAGGCAATAGATTTTATTggtgagattacatgcctatgctcatcctgcccacttgatttcaagaaccac Alignment from Spaln_aa2Genome GGTGGCCCGGTTGAAATCCTTCCCTTCCTCTACCTTGGAAGTGCCTACCACGCATCCAAGTGCGAGTTCCTCGCCAACCTGCACATCACAGCCCTGCTGAATGTTTCCCGCCGGACCTCCGAGGCCTGCACCACCCACCTACACTACAAGTGGATCCCCGTGGAGGACAGCCACACTGCTGACATTAGCTCCCACTTTCAAGAAGCAATAGATTTTATTG agacaggtggattcaaatttcctgttcctttactttttttttccttttagGGCGGTCCAGTAGAAATCCTTCCATTCCTCTACCTTGGAAGTGCCTACCATGCATCTAAGTGTGGCTTCCTTGCCAACCTGCACATCACAGCCCTACTTAATGTTTCACGCCGGACCTCTGAGGCCTGCACAACCCACCTCCACTACAAGTGGATCCCCATTGAGGACAGTCATACTGCTGACATTAGCTCACGCTTTCAAGAGGCAATAGATTTTATTGgtgagattacatgcctatgctcatcctgcccacttgatttcaagaaccac Alignment from Spaln_nt2Genome GGTGGCCCGGTTGAAATCCTTCCCTTCCTCTACCTTGGAAGTGCCTACCACGCATCCAAGTGCGAGTTCCTCGCCAACCTGCACATCACAGCCCTGCTGAATGTTTCCCGCCGGACCTCCGAGGCCTGCACCACCCACCTACACTACAAGTGGATCCCCGTGGAGGACAGCCACACTGCTGACATTAGCTCCCACTTTCAAGAAGCAATAGATTTTATTG agacaggtggattcaaatttcctgttcctttactttttttttccttttagGGCGGTCCAGTAGAAATCCTTCCATTCCTCTACCTTGGAAGTGCCTACCATGCATCTAAGTGTGGCTTCCTTGCCAACCTGCACATCACAGCCCTACTTAATGTTTCACGCCGGACCTCTGAGGCCTGCACAACCCACCTCCACTACAAGTGGATCCCCATTGAGGACAGTCATACTGCTGACATTAGCTCACGCTTTCAAGAGGCAATAGATTTTATTGgtgagattacatgcctatgctcatcctgcccacttgatttcaagaaccac Alignment from Pairagon GGTGGCCCGGTTGAAATCCTTCCCTTCCTCTACCTTGGAAGTGCCTACCACGCATCCAAGTGCGAGTTCCTCGCCAACCTGCACATCACAGCCCTGCTGAATGTTTCCCGCCGGACCTCCGAGGCCTGCACCACCCACCTACACTACAAGTGGATCCCCGTGGAGGACAGCCACACTGCTGACATTAGCTCCCACTTTCAAGAAGCAATAGATTTTATTG agacaggtggattcaaatttcctgttcctttactttttttttccttttagGGCGGTCCAGTAGAAATCCTTCCATTCCTCTACCTTGGAAGTGCCTACCATGCATCTAAGTGTGGCTTCCTTGCCAACCTGCACATCACAGCCCTACTTAATGTTTCACGCCGGACCTCTGAGGCCTGCACAACCCACCTCCACTACAAGTGGATCCCCATTGAGGACAGTCATACTGCTGACATTAGCTCACGCTTTCAAGAGGCAATAGATTTTATTGgtgagattacatgcctatgctcatcctgcccacttgatttcaagaaccac Alignment from Exonerate_protein2genome GGTGGCCCGGTTGAAATCCTTCCCTTCCTCTACCTTGGAAGTGCCTACCACGCATCCAAGTGCGAGTTCCTCGCCAACCTGCACATCACAGCCCTGCTGAATGTTTCCCGCCGGACCTCCGAGGCCTGCACCACCCACCTACACTACAAGTGGATCCCCGTGGAGGACAGCCACACTGCTGACATTAGCTCCCACTTTCAAGAAGCAATAGATTTTATTG agacaggtggattcaaatttcctgttcctttactttttttttccttttagGGCGGTCCAGTAGAAATCCTTCCATTCCTCTACCTTGGAAGTGCCTACCATGCATCTAAGTGTGGCTTCCTTGCCAACCTGCACATCACAGCCCTACTTAATGTTTCACGCCGGACCTCTGAGGCCTGCACAACCCACCTCCACTACAAGTGGATCCCCATTGAGGACAGTCATACTGCTGACATTAGCTCACGCTTTCAAGAGGCAATAGATTTTATTGgtgagattacatgcctatgctcatcctgcccacttgatttcaagaaccac Alignment from Exonerate_coding2genome GGTGGCCCGGTTGAAATCCTTCCCTTCCTCTACCTTGGAAGTGCCTACCACGCATCCAAGTGCGAGTTCCTCGCCAACCTGCACATCACAGCCCTGCTGAATGTTTCCCGCCGGACCTCCGAGGCCTGCACCACCCACCTACACTACAAGTGGATCCCCGTGGAGGACAGCCACACTGCTGACATTAGCTCCCACTTTCAAGAAGCAATAGATTTTATTG agacaggtggattcaaatttcctgttcctttactttttttttccttttagGGCGGTCCAGTAGAAATCCTTCCATTCCTCTACCTTGGAAGTGCCTACCATGCATCTAAGTGTGGCTTCCTTGCCAACCTGCACATCACAGCCCTACTTAATGTTTCACGCCGGACCTCTGAGGCCTGCACAACCCACCTCCACTACAAGTGGATCCCCATTGAGGACAGTCATACTGCTGACATTAGCTCACGCTTTCAAGAGGCAATAGATTTTATTGgtgagattacatgcctatgctcatcctgcccacttgatttcaagaaccac Alignment from GeneWise GGTGGCCCGGTTGAAATCCTTCCCTTCCTCTACCTTGGAAGTGCCTACCACGCATCCAAGTGCGAGTTCCTCGCCAACCTGCACATCACAGCCCTGCTGAATGTTTCCCGCCGGACCTCCGAGGCCTGCACCACCCACCTACACTACAAGTGGATCCCCGTGGAGGACAGCCACACTGCTGACATTAGCTCCCACTTTCAAGAAGCAATAGATTTTATTG agacaggtggattcaaatttcctgttcctttactttttttttccttttagGGCGGTCCAGTAGAAATCCTTCCATTCCTCTACCTTGGAAGTGCCTACCATGCATCTAAGTGTGGCTTCCTTGCCAACCTGCACATCACAGCCCTACTTAATGTTTCACGCCGGACCTCTGAGGCCTGCACAACCCACCTCCACTACAAGTGGATCCCCATTGAGGACAGTCATACTGCTGACATTAGCTCACGCTTTCAAGAGGCAATAGATTTTATTGgtgagattacatgcctatgctcatcctgcccacttgatttcaagaaccac #### Eef1g_ID2564_6 --> 0 - 1 Original Alignment GTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGCATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATg tgtaccctgtggcattatgggtccaagagcctcttcatcctttattctagGTCTTAGACCCTTCCTTTTGCCAGGCCTTTCCCAATGTGAACCGGTGGTTCCTGGCTTGTATCAACCAGCCCAAGTTTAGAGCTATCTTGGGAGAAGTGAAGCTTTGTGAGAAAATGGCTCAGTTTGATggtgcagtagaaagactatatagataatgctctcctattacatactctctg Alignment from CESAR GTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGCATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATg tgtaccctgtggcattatgggtccaagagcctcttcatcctttattctagGTCTTAGACCCTTCCTTTTGCCAGGCCTTTCCCAATGTGAACCGGTGGTTCCTGGCTTGTATCAACCAGCCCAAGTTTAGAGCTATCTTGGGAGAAGTGAAGCTTTGTGAGAAAATGGCTCAGTTTGATggtgcagtagaaagactatatagataatgctctcctattacatactctctg Alignment from Spaln_aa2Genome GTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGCATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATG tgtaccctgtggcattatgggtccaagagcctcttcatcctttattctagGTCTTAGACCCTTCCTTTTGCCAGGCCTTTCCCAATGTGAACCGGTGGTTCCTGGCTTGTATCAACCAGCCCAAGTTTAGAGCTATCTTGGGAGAAGTGAAGCTTTGTGAGAAAATGGCTCAGTTTGATGgtgcagtagaaagactatatagataatgctctcctattacatactctctg Alignment from Spaln_nt2Genome GTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGCATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATG tgtaccctgtggcattatgggtccaagagcctcttcatcctttattctagGTCTTAGACCCTTCCTTTTGCCAGGCCTTTCCCAATGTGAACCGGTGGTTCCTGGCTTGTATCAACCAGCCCAAGTTTAGAGCTATCTTGGGAGAAGTGAAGCTTTGTGAGAAAATGGCTCAGTTTGATGgtgcagtagaaagactatatagataatgctctcctattacatactctctg Alignment from Pairagon GTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGCATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATG tgtaccctgtggcattatgggtccaagagcctcttcatcctttattctagGTCTTAGACCCTTCCTTTTGCCAGGCCTTTCCCAATGTGAACCGGTGGTTCCTGGCTTGTATCAACCAGCCCAAGTTTAGAGCTATCTTGGGAGAAGTGAAGCTTTGTGAGAAAATGGCTCAGTTTGATGgtgcagtagaaagactatatagataatgctctcctattacatactctctg Alignment from Exonerate_protein2genome GTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGCATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATG tgtaccctgtggcattatgggtccaagagcctcttcatcctttattctagGTCTTAGACCCTTCCTTTTGCCAGGCCTTTCCCAATGTGAACCGGTGGTTCCTGGCTTGTATCAACCAGCCCAAGTTTAGAGCTATCTTGGGAGAAGTGAAGCTTTGTGAGAAAATGGCTCAGTTTGATGgtgcagtagaaagactatatagataatgctctcctattacatactctctg Alignment from Exonerate_coding2genome GTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGCATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATG tgtaccctgtggcattatgggtccaagagcctcttcatcctttattctagGTCTTAGACCCTTCCTTTTGCCAGGCCTTTCCCAATGTGAACCGGTGGTTCCTGGCTTGTATCAACCAGCCCAAGTTTAGAGCTATCTTGGGAGAAGTGAAGCTTTGTGAGAAAATGGCTCAGTTTGATGgtgcagtagaaagactatatagataatgctctcctattacatactctctg Alignment from GeneWise GTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGCATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATG tgtaccctgtggcattatgggtccaagagcctcttcatcctttattctagGTCTTAGACCCTTCCTTTTGCCAGGCCTTTCCCAATGTGAACCGGTGGTTCCTGGCTTGTATCAACCAGCCCAAGTTTAGAGCTATCTTGGGAGAAGTGAAGCTTTGTGAGAAAATGGCTCAGTTTGATGgtgcagtagaaagactatatagataatgctctcctattacatactctctg #### Efemp2_ID1032_5 --> 2 - 1 Original Alignment acATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGg gatacatccaagttgtttggctgggctacagactgtcatttgttttccagacATCGATGAGTGCCGTTACCGCTATTGCCAGCATCGATGTGTGATCCTACCAGGCTCATTCCGATGTCAATGTGAGCCAGGCTTCCAATTGGGACCTAACATTCGTTCCTGTGTGggtagggcagtgtgtcccgcaagtctttaaccttcaagtggaaccactatg Alignment from CESAR acATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGg gatacatccaagttgtttggctgggctacagactgtcatttgttttccagacATCGATGAGTGCCGTTACCGCTATTGCCAGCATCGATGTGTGATCCTACCAGGCTCATTCCGATGTCAATGTGAGCCAGGCTTCCAATTGGGACCTAACATTCGTTCCTGTGTGggtagggcagtgtgtcccgcaagtctttaaccttcaagtggaaccactatg Alignment from Spaln_aa2Genome ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG gatacatccaagttgtttggctgggctacagactgtcatttgttttccagACATCGATGAGTGCCGTTACCGCTATTGCCAGCATCGATGTGTGATCCTACCAGGCTCATTCCGATGTCAATGTGAGCCAGGCTTCCAATTGGGACCTAACATTCGTTCCTGTGTGGgtagggcagtgtgtcccgcaagtctttaaccttcaagtggaaccactatg Alignment from Spaln_nt2Genome ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG gatacatccaagttgtttggctgggctacagactgtcatttgttttccagACATCGATGAGTGCCGTTACCGCTATTGCCAGCATCGATGTGTGATCCTACCAGGCTCATTCCGATGTCAATGTGAGCCAGGCTTCCAATTGGGACCTAACATTCGTTCCTGTGTGGgtagggcagtgtgtcccgcaagtctttaaccttcaagtggaaccactatg Alignment from Pairagon ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG gatacatccaagttgtttggctgggctacagactgtcatttgttttccagACATCGATGAGTGCCGTTACCGCTATTGCCAGCATCGATGTGTGATCCTACCAGGCTCATTCCGATGTCAATGTGAGCCAGGCTTCCAATTGGGACCTAACATTCGTTCCTGTGTGGgtagggcagtgtgtcccgcaagtctttaaccttcaagtggaaccactatg Alignment from Exonerate_protein2genome ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG gatacatccaagttgtttggctgggctacagactgtcatttgttttccagACATCGATGAGTGCCGTTACCGCTATTGCCAGCATCGATGTGTGATCCTACCAGGCTCATTCCGATGTCAATGTGAGCCAGGCTTCCAATTGGGACCTAACATTCGTTCCTGTGTGGgtagggcagtgtgtcccgcaagtctttaaccttcaagtggaaccactatg Alignment from Exonerate_coding2genome ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG gatacatccaagttgtttggctgggctacagactgtcatttgttttccagACATCGATGAGTGCCGTTACCGCTATTGCCAGCATCGATGTGTGATCCTACCAGGCTCATTCCGATGTCAATGTGAGCCAGGCTTCCAATTGGGACCTAACATTCGTTCCTGTGTGGgtagggcagtgtgtcccgcaagtctttaaccttcaagtggaaccactatg Alignment from GeneWise ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG gatacatccaagttgtttggctgggctacagactgtcatttgttttccagACATCGATGAGTGCCGTTACCGCTATTGCCAGCATCGATGTGTGATCCTACCAGGCTCATTCCGATGTCAATGTGAGCCAGGCTTCCAATTGGGACCTAACATTCGTTCCTGTGTGGgtagggcagtgtgtcccgcaagtctttaaccttcaagtggaaccactatg #### Ehbp1l1_ID1217_18 --> 2 - 2 Original Alignment agTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGat tttttcatagtaggccagaaaggagcacatactttcctctttctttttagaaTGGCATACAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTTGAGGGACTTGTGTCTTTAGTAAACCAGAGGGAAGAGCTAGTTGGGGATTTAGATCAGAAGGAGCAGgtgtaagaacatgaacatgttttggccaggggaatgcctattgaggcccaag Alignment from CESAR agTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGat tttttcatagtaggccagaaaggagcacatactttcctctttctttttagaaTGGCATACAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTTGAGGGACTTGTGTCTTTAGTAAACCAGAGGGAAGAGCTAGTTGGGGATTTAGATCAGAAGGAGCAGgtgtaagaacatgaacatgttttggccaggggaatgcctattgaggcccaag Alignment from Spaln_aa2Genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT tttttcatagtaggccagaaaggagcacatactttcctctttctttttagAATGGCATACAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTTGAGGGACTTGTGTCTTTAGTAAACCAGAGGGAAGAGCTAGTTGGGGATTTAGATCAGAAGGAGCAGGTgtaagaacatgaacatgttttggccaggggaatgcctattgaggcccaag Alignment from Spaln_nt2Genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT tttttcatagtaggccagaaaggagcacatactttcctctttctttttagAATGGCATACAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTTGAGGGACTTGTGTCTTTAGTAAACCAGAGGGAAGAGCTAGTTGGGGATTTAGATCAGAAGGAGCAGGTgtaagaacatgaacatgttttggccaggggaatgcctattgaggcccaag Alignment from Pairagon AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT tttttcatagtaggccagaaaggagcacatactttcctctttctttttagAATGGCATACAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTTGAGGGACTTGTGTCTTTAGTAAACCAGAGGGAAGAGCTAGTTGGGGATTTAGATCAGAAGGAGCAGGTgtaagaacatgaacatgttttggccaggggaatgcctattgaggcccaag Alignment from Exonerate_protein2genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT tttttcatagtaggccagaaaggagcacatactttcctctttctttttagAATGGCATACAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTTGAGGGACTTGTGTCTTTAGTAAACCAGAGGGAAGAGCTAGTTGGGGATTTAGATCAGAAGGAGCAGGTgtaagaacatgaacatgttttggccaggggaatgcctattgaggcccaag Alignment from Exonerate_coding2genome tttttcatagtaggccagaaaggagcacatactttcctctttctttttagaatggcatacaacagttgcacagcagcactgtgaacaactcctccttgagggacttgtgtctttagtaaaccagagggaagagctagttggggatttagatcagaaggagcaggtgtaagaacatgaacatgttttggccaggggaatgcctattgaggcccaag Alignment from GeneWise AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT tttttcatagtaggccagaaaggagcacatactttcctctttctttttagAATGGCATACAACAGTTGCACAGCAGCACTGTGAACAACTCCTCCTTGAGGGACTTGTGTCTTTAGTAAACCAGAGGGAAGAGCTAGTTGGGGATTTAGATCAGAAGGAGCAGGTgtaagaacatgaacatgttttggccaggggaatgcctattgaggcccaag #### Ehbp1l1_ID1220_15 --> 0 - 1 Original Alignment CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAg gtagcttaggtgaggcaacctgtcctcttcttctctttcttcggtggcagCATCGGTTACAGGACACAAGCCAGTATGTGTGTGCAGAGCAACAAGCCCTTGAGCAGGAACAGGGACAGGTTGATGGCAGGGCTCCTGAAGTGCAGAGACAATTTCGGAGCCTGATGGAATCAggtaaagccccctagtttcatctgtgcttaaaacctgatacagttgagaca Alignment from CESAR CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAg gtagcttaggtgaggcaacctgtcctcttcttctctttcttcggtggcagCATCGGTTACAGGACACAAGCCAGTATGTGTGTGCAGAGCAACAAGCCCTTGAGCAGGAACAGGGACAGGTTGATGGCAGGGCTCCTGAAGTGCAGAGACAATTTCGGAGCCTGATGGAATCAggtaaagccccctagtttcatctgtgcttaaaacctgatacagttgagaca Alignment from Spaln_aa2Genome CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG gtagcttaggtgaggcaacctgtcctcttcttctctttcttcggtggcagCATCGGTTACAGGACACAAGCCAGTATGTGTGTGCAGAGCAACAAGCCCTTGAGCAGGAACAGGGACAGGTTGATGGCAGGGCTCCTGAAGTGCAGAGACAATTTCGGAGCCTGATGGAATCAGgtaaagccccctagtttcatctgtgcttaaaacctgatacagttgagaca Alignment from Spaln_nt2Genome CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG gtagcttaggtgaggcaacctgtcctcttcttctctttcttcggtggcagCATCGGTTACAGGACACAAGCCAGTATGTGTGTGCAGAGCAACAAGCCCTTGAGCAGGAACAGGGACAGGTTGATGGCAGGGCTCCTGAAGTGCAGAGACAATTTCGGAGCCTGATGGAATCAGgtaaagccccctagtttcatctgtgcttaaaacctgatacagttgagaca Alignment from Pairagon CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG gtagcttaggtgaggcaacctgtcctcttcttctctttcttcggtggcagCATCGGTTACAGGACACAAGCCAGTATGTGTGTGCAGAGCAACAAGCCCTTGAGCAGGAACAGGGACAGGTTGATGGCAGGGCTCCTGAAGTGCAGAGACAATTTCGGAGCCTGATGGAATCAGgtaaagccccctagtttcatctgtgcttaaaacctgatacagttgagaca Alignment from Exonerate_protein2genome CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG gtagcttaggtgaggcaacctgtcctcttcttctctttcttcggtggcagCATCGGTTACAGGACACAAGCCAGTATGTGTGTGCAGAGCAACAAGCCCTTGAGCAGGAACAGGGACAGGTTGATGGCAGGGCTCCTGAAGTGCAGAGACAATTTCGGAGCCTGATGGAATCAGgtaaagccccctagtttcatctgtgcttaaaacctgatacagttgagaca Alignment from Exonerate_coding2genome CTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTGCAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG gtagcttagGTGAGGCAACCTGTCCTCTTCTTCTCTTTCTTCGGTGGCAGCATCGGTTACAGGACACAAGCCAGTATGTGTGTGCAGAGCAACAAGCCCTTGAGCAGGAACAGGGACAGGTTGATGGCAGGGCTCCTGAAGTGCAGAGACAATTTCGGAGCCTGATGGAATCAGgtaaagccccctagtttcatctgtgcttaaaacctgatacagttgagaca Alignment from GeneWise CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG gtagcttaggtgaggcaacctgtcctcttcttctctttcttcggtggcagCATCGGTTACAGGACACAAGCCAGTATGTGTGTGCAGAGCAACAAGCCCTTGAGCAGGAACAGGGACAGGTTGATGGCAGGGCTCCTGAAGTGCAGAGACAATTTCGGAGCCTGATGGAATCAGgtaaagccccctagtttcatctgtgcttaaaacctgatacagttgagaca #### Ehbp1l1_ID1222_13 --> 0 - 1 Original Alignment GAAGGTCCAAACCCTGCCTCCAGCCCTGACGCTAACCCACTCCCAGCCCCAGCCCCACAGCAGCCGCCCg attagttctgagaggcacaaggctcatatcttctatccctcttcctgcagGAAGGTCCAAACCCTGCCTCTAGCCCTGATGCAAATCCTCTGCCT---CCCTTCCCACAGCAACCACCTggtaagacattggggagatagctgtggtgctaatattttgctcaggaatag Alignment from CESAR GAAGGTCCAAACCCTGCCTCCAGCCCTGACGCTAACCCACTCCCAGCCCCAGCCCCACAGCAGCCGCCCg attagttctgagaggcacaaggctcatatcttctatccctcttcctgcagGAAGGTCCAAACCCTGCCTCTAGCCCTGATGCAAATCCTCTGCCT---CCCTTCCCACAGCAACCACCTggtaagacattggggagatagctgtggtgctaatattttgctcaggaatag Alignment from Spaln_aa2Genome GAAGGTCCAAACCCTGCCTCCAGCCCTGACGCTAACCCACTCCCAGCCCCAGCCCCACAGCAGCCGCCCG attagttctgagaggcacaaggctcatatcttctatccctcttcctgcagGAAGGTCCAAACCCTGCCTCTAGCCCTGATGCAAATCCTCTGCCT---CCCTTCCCACAGCAACCACCTGgtaagacattggggagatagctgtggtgctaatattttgctcaggaatag Alignment from Spaln_nt2Genome GAAGGTCCAAACCCTGCCTCCAGCCCTGACGCTAACCCACTCCCAGCCCCAGCCCCACAGCAGCCGCCCG attagttctgagaggcacaaggctcatatcttctatccctcttcctgcagGAAGGTCCAAACCCTGCCTCTAGCCCTGATGCAAATCCTCTGC---CTCCCTTCCCACAGCAACCACCTGgtaagacattggggagatagctgtggtgctaatattttgctcaggaatag Alignment from Pairagon GAAGGTCCAAACCCTGCCTCCAGCCCTGACGCTAACCCACTCCCAGCCCCAGCCCCACAGCAGCCGCCCG attagttctgagaggcacaaggctcatatcttctatccctcttcctgcagGAAGGTCCAAACCCTGCCTCTAGCCCTGATGCAAATCCTCTGC---CTCCCTTCCCACAGCAACCACCTGgtaagacattggggagatagctgtggtgctaatattttgctcaggaatag Alignment from Exonerate_protein2genome GAAGGTCCAAACCCTGCCTCCAGCCCTGACGCTAACCCACTCCCAGCCCCAGCCCCACAGCAGCCGCCCG attagttctgagaggcacaaggctcatatcttctatccctcttcctgcagGAAGGTCCAAACCCTGCCTCTAGCCCTGATGCAAATCCTCTGCCT---CCCTTCCCACAGCAACCACCTGgtaagacattggggagatagctgtggtgctaatattttgctcaggaatag Alignment from Exonerate_coding2genome GAAGGTCCAAACCCTGCCTCCAGCCCTGACGCTAACCCACTCCCAGCCCCAGCCCCACAGCAGCCGCCCGGTGGGCCCCCTCCTA attagttctgagaggcacaaggctcatatcttctatccctcttcctgcagGAAGGTCCAAACCCTGCCTCTAGCCCTGATGCAAATCCTCTGCCT---CCCTTCCCACAGCAACCACCTGGTAAGACATTGGGGAgatagctgtggtgctaatattttgctcaggaatag Alignment from GeneWise GAAGGTCCAAACCCTGCCTCCAGCCCTGACGCTAACCCACTCCCAGCCCCAGCCCCACAGCAGCCGCCCG attagttctgagaggcacaaggctcatatcttctatccctcttcctgcagGAAGGTCCAAACCCTGCCTCTAGCCCTGATGCAAATCCTCTGCCT---CCCTTCCCACAGCAACCACCTGgtaagacattggggagatagctgtggtgctaatattttgctcaggaatag #### Ehbp1l1_ID1223_12 --> 0 - 0 Original Alignment GCTTTTGATGGCTTCGCTGCCCTGGGTGTGTCTCGGCTGCTCGAGCCGGCGGACATGGTACTTCTGTCCGTACCTGACAAGCTCATCGTCATGACGTACCTGTGCCAGATCCGTGCCTTCTGCACTGGGCAGGAGCTGCAGCTGGTGCAACTGGAGGGCGGCGGTGGCTCTGGCACTTATCGTGTGGGCAACGCCCAGCCGAGCCTGCCCGACTGTCTGGACGCAGGAGACCTGGCGCAGCGATTACGCGAGCATGGGGCTGAAGTGCCCACAGAACCTAAGGAGGCTGTGAACCGCGGGACT---GGGGCAATACCAAAGGTGGCCTCCAGGGACACGGACCTGAGCTGCTCCTCTAAGGATGGGGAGGCAGAGGTTGCCCAGGAAGCAATCCCTCAAGAGGCGCCCACCGACGGCCCTAGAGCCAGGTCGTCCACAACCCCGGTGGTCCCTGCAGAGGGGCTGGTGAACGGAGTGGGGGCGTCAGGTGGTGTGAGTGGTGTGAGACTGAGACGGTCCTCTGTCAATGGGGAGGCTGGGCCAGTACCTCCACCCCGAGCACATGGCTCTTTCTCCCACGTGCGGGACGCCGATTTGCTAAAGAAGAGGCGATCGAGGTTAAGGAATAGCAACTCTTTCTCTGTGGATGACCAGGACTCTGGAGCTGCAGTTGGAGCAGGGCCTGCAGGGCCTGGAGCTGTG caagaaatgcatttactcttttcatgcttacaaacttgatctgtgtttagGCTTTTGAAGGCTTTGGTACTCTTAGTGTATCTAGGCTGCTTGGGCCAGCAGACATGGTAGTTCTGTCAGTACCTGACAAGCTTATTGTCATGACATATTTGTTGCAGATCCGTGCCTTGTGTACAGGGCAAGAGCTGCAACTAGTTCAGCTGAAGGGTGGTGGCGCCTCAGGAACTCATCATGTAGACAATACCCAGCTCAGTCTGCCAGACTGCCTTGATGTAGGAGATTTGGCAAAGCAATTAAAAGAGCATGGGGCTGAGGTACCTACTGAACCTAAGGAGGCTGTCAATTGTGGGACATCAGGGGCAATCCCGAAGTTGGCCTCCAGGGATACGGAC---CACTGTTCCTCTAAGGATGGGGAGGCAGAGGTTGCACAAGAGGCAATCCCTCAAAAACCCCCTACTGATGGACCGAGAGCCAGATTGTCAACCACCCCTGTAGTTCCTGCAGAGGGGCTAGTGAATGGATTGGAGTCATCAGGAGGAGTAAGTGGTGTGAGATTGAGATGGACAACCATCAAGGGAGAGACCAGGCCAGTG---CCCCCTCGGGCATATGGATCCTTCTCACATGTA------------GTGCTGAAAAAGAGGCAATCCAGGCTGAGGAACAGTAACTCCTTTGCCGTAGATCATCGTGATTCTGGAACAACAGTGGTAGCTGGGCCTGCTGGACCTGGGGCTGTCgtacgcaataccattttgctcctgcacaaaatattgtcaagccttagtgg Alignment from CESAR GCTTTTGATGGCTTCGCTGCCCTGGGTGTGTCTCGGCTGCTCGAGCCGGCGGACATGGTACTTCTGTCCGTACCTGACAAGCTCATCGTCATGACGTACCTGTGCCAGATCCGTGCCTTCTGCACTGGGCAGGAGCTGCAGCTGGTGCAACTGGAGGGCGGCGGTGGCTCTGGCACTTATCGTGTGGGCAACGCCCAGCCGAGCCTGCCCGACTGTCTGGACGCAGGAGACCTGGCGCAGCGATTACGCGAGCATGGGGCTGAAGTGCCCACAGAACCTAAGGAGGCTGTGAACCGCGGGACT---GGGGCAATACCAAAGGTGGCCTCCAGGGACACGGACCTGAGCTGCTCCTCTAAGGATGGGGAGGCAGAGGTTGCCCAGGAAGCAATCCCTCAAGAGGCGCCCACCGACGGCCCTAGAGCCAGGTCGTCCACAACCCCGGTGGTCCCTGCAGAGGGGCTGGTGAACGGAGTGGGGGCGTCAGGTGGTGTGAGTGGTGTGAGACTGAGACGGTCCTCTGTCAATGGGGAGGCTGGGCCAGTACCTCCACCCCGAGCACATGGCTCTTTCTCCCACGTGCGGGACGCCGATTTGCTAAAGAAGAGGCGATCGAGGTTAAGGAATAGCAACTCTTTCTCTGTGGATGACCAGGACTCTGGAGCTGCAGTTGGAGCAGGGCCTGCAGGGCCTGGAGCTGTG caagaaatgcatttactcttttcatgcttacaaacttgatctgtgtttagGCTTTTGAAGGCTTTGGTACTCTTAGTGTATCTAGGCTGCTTGGGCCAGCAGACATGGTAGTTCTGTCAGTACCTGACAAGCTTATTGTCATGACATATTTGTTGCAGATCCGTGCCTTGTGTACAGGGCAAGAGCTGCAACTAGTTCAGCTGAAGGGTGGTGGCGCCTCAGGAACTCATCATGTAGACAATACCCAGCTCAGTCTGCCAGACTGCCTTGATGTAGGAGATTTGGCAAAGCAATTAAAAGAGCATGGGGCTGAGGTACCTACTGAACCTAAGGAGGCTGTCAATTGTGGGACATCAGGGGCAATCCCGAAGTTGGCCTCCAGGGATACGGAC---CACTGTTCCTCTAAGGATGGGGAGGCAGAGGTTGCACAAGAGGCAATCCCTCAAAAACCCCCTACTGATGGACCGAGAGCCAGATTGTCAACCACCCCTGTAGTTCCTGCAGAGGGGCTAGTGAATGGATTGGAGTCATCAGGAGGAGTAAGTGGTGTGAGATTGAGATGGACAACCATCAAGGGAGAGACCAGGCCAGTGCCC---CCTCGGGCATATGGATCCTTCTCACATGTA------------GTGCTGAAAAAGAGGCAATCCAGGCTGAGGAACAGTAACTCCTTTGCCGTAGATCATCGTGATTCTGGAACAACAGTGGTAGCTGGGCCTGCTGGACCTGGGGCTGTCgtacgcaataccattttgctcctgcacaaaatattgtcaagccttagtgg Alignment from Spaln_aa2Genome GCTTTTGATGGCTTCGCTGCCCTGGGTGTGTCTCGGCTGCTCGAGCCGGCGGACATGGTACTTCTGTCCGTACCTGACAAGCTCATCGTCATGACGTACCTGTGCCAGATCCGTGCCTTCTGCACTGGGCAGGAGCTGCAGCTGGTGCAACTGGAGGGCGGCGGTGGCTCTGGCACTTATCGTGTGGGCAACGCCCAGCCGAGCCTGCCCGACTGTCTGGACGCAGGAGACCTGGCGCAGCGATTACGCGAGCATGGGGCTGAAGTGCCCACAGAACCTAAGGAGGCTGTGAACCGCGGGACTGGGGCAATACCAAAGGTGGCCTCCAGGGACACGGACCTGAGCTGCTCCTCTAAGGATGGGGAGGCAGAGGTTGCCCAGGAAGCAATCCCTCAAGAGGCGCCCACCGACGGCCCTAGAGCCAGGTCGTCCACAACCCCGGTGGTCCCTGCAGAGGGGCTGGTGAACGGAGTGGGGGCGTCAGGTGGTGTGAGTGGTGTGAGACTGAGACGGTCCTCTGTCAATGGGGAGGCTGGGCCAGTACCTCCACCCCGAGCACATGGCTCTTTCTCCCACGTGCGGGACGCCGATTTGCTAAAGAAGAGGCGATCGAGGTTAAGGAATAGCAACTCTTTCTCTGTGGATGACCAGGACTCTGGAGCTGCAGTTGGAGCAGGGCCTGCAGGGCCTGGAGCTGTG caagaaatgcatttactcttttcatgcttacaaacttgatctgtgtttagGCTTTTGAAGGCTTTGGTACTCTTAGTGTATCTAGGCTGCTTGGGCCAGCAGACATGGTAGTTCTGTCAGTACCTGACAAGCTTATTGTCATGACATATTTGTTGCAGATCCGTGCCTTGTGTACAGGGCAAGAGCTGCAACTAGTTCAGCTGAAGGGTGGTGGCGCCTCAGGAACTCATCATGTAGACAATACCCAGCTCAGTCTGCCAGACTGCCTTGATGTAGGAGATTTGGCAAAGCAATTAAAAGAGCATGGGGCTGAGGTACCTACTGAACCTAAGGAGGCTGTCAATTGTGGGACATCAGGGGCAATCCCGAAGTTGGCCTCCAGGGATACGGACCACTGTTCCTCTAAGGATGGGGAGGCAGAGGTTGCACAAGAGGCAATCCCTCAAAAACCCCCTACTGATGGACCGAGAGCCAGATTGTCAACCACCCCTGTAGTTCCTGCAGAGGGGCTAGTGAATGGATTGGAGTCATCAGGAGGAGTAAGTGGTGTGAGATTGAGATGGACAACCATCAAGGGAGAGACCAGGCCAGTG---CCCCCTCGGGCATATGGATCCTTCTCACATGTA------------GTGCTGAAAAAGAGGCAATCCAGGCTGAGGAACAGTAACTCCTTTGCCGTAGATCATCGTGATTCTGGAACAACAGTGGTAGCTGGGCCTGCTGGACCTGGGGCTGTCgtacgcaataccattttgctcctgcacaaaatattgtcaagccttagtgg Alignment from Spaln_nt2Genome GCTTTTGATGGCTTCGCTGCCCTGGGTGTGTCTCGGCTGCTCGAGCCGGCGGACATGGTACTTCTGTCCGTACCTGACAAGCTCATCGTCATGACGTACCTGTGCCAGATCCGTGCCTTCTGCACTGGGCAGGAGCTGCAGCTGGTGCAACTGGAGGGCGGCGGTGGCTCTGGCACTTATCGTGTGGGCAACGCCCAGCCGAGCCTGCCCGACTGTCTGGACGCAGGAGACCTGGCGCAGCGATTACGCGAGCATGGGGCTGAAGTGCCCACAGAACCTAAGGAGGCTGTGAACCGCGGGACT---GGGGCAATACCAAAGGTGGCCTCCAGGGACACGGACCTGAGCTGCTCCTCTAAGGATGGGGAGGCAGAGGTTGCCCAGGAAGCAATCCCTCAAGAGGCGCCCACCGACGGCCCTAGAGCCAGGTCGTCCACAACCCCGGTGGTCCCTGCAGAGGGGCTGGTGAACGGAGTGGGGGCGTCAGGTGGTGTGAGTGGTGTGAGACTGAGACGGTCCTCTGTCAATGGGGAGGCTGGGCCAGTACCTCCACCCCGAGCACATGGCTCTTTCTCCCACGTGCGGGACGCCGATTTGCTAAAGAAGAGGCGATCGAGGTTAAGGAATAGCAACTCTTTCTCTGTGGATGACCAGGACTCTGGAGCTGCAGTTGGAGCAGGGCCTGCAGGGCCTGGAGCTGTG caagaaatgcatttactcttttcatgcttacaaacttgatctgtgtttagGCTTTTGAAGGCTTTGGTACTCTTAGTGTATCTAGGCTGCTTGGGCCAGCAGACATGGTAGTTCTGTCAGTACCTGACAAGCTTATTGTCATGACATATTTGTTGCAGATCCGTGCCTTGTGTACAGGGCAAGAGCTGCAACTAGTTCAGCTGAAGGGTGGTGGCGCCTCAGGAACTCATCATGTAGACAATACCCAGCTCAGTCTGCCAGACTGCCTTGATGTAGGAGATTTGGCAAAGCAATTAAAAGAGCATGGGGCTGAGGTACCTACTGAACCTAAGGAGGCTGTCAATTGTGGGACATCAGGGGCAATCCCGAAGTTGGCCTCCAGGGATACGGACC---ACTGTTCCTCTAAGGATGGGGAGGCAGAGGTTGCACAAGAGGCAATCCCTCAAAAACCCCCTACTGATGGACCGAGAGCCAGATTGTCAACCACCCCTGTAGTTCCTGCAGAGGGGCTAGTGAATGGATTGGAGTCATCAGGAGGAGTAAGTGGTGTGAGATTGAGATGGACAACCATCAAGGGAGAGACCAGGCCAGT---GCCCCCTCGGGCATATGGATCCTTCTCACATGT------------AGTGCTGAAAAAGAGGCAATCCAGGCTGAGGAACAGTAACTCCTTTGCCGTAGATCATCGTGATTCTGGAACAACAGTGGTAGCTGGGCCTGCTGGACCTGGGGCTGTCgtacgcaataccattttgctcctgcacaaaatattgtcaagccttagtgg Alignment from Pairagon GCTTTTGATGGCTTCGCTGCCCTGGGTGTGTCTCGGCTGCTCGAGCCGGCGGACATGGTACTTCTGTCCGTACCTGACAAGCTCATCGTCATGACGTACCTGTGCCAGATCCGTGCCTTCTGCACTGGGCAGGAGCTGCAGCTGGTGCAACTGGAGGGCGGCGGTGGCTCTGGCACTTATCGTGTGGGCAACGCCCAGCCGAGCCTGCCCGACTGTCTGGACGCAGGAGACCTGGCGCAGCGATTACGCGAGCATGGGGCTGAAGTGCCCACAGAACCTAAGGAGGCTGTGAACCGCGGGA---CTGGGGCAATACCAAAGGTGGCCTCCAGGGACACGGACCTGAGCTGCTCCTCTAAGGATGGGGAGGCAGAGGTTGCCCAGGAAGCAATCCCTCAAGAGGCGCCCACCGACGGCCCTAGAGCCAGGTCGTCCACAACCCCGGTGGTCCCTGCAGAGGGGCTGGTGAACGGAGTGGGGGCGTCAGGTGGTGTGAGTGGTGTGAGACTGAGACGGTCCTCTGTCAATGGGGAGGCTGGGCCAGTACCTCCACCCCGAGCACATGGCTCTTTCTCCCACGTGCGGGACGCCGATTTGCTAAAGAAGAGGCGATCGAGGTTAAGGAATAGCAACTCTTTCTCTGTGGATGACCAGGACTCTGGAGCTGCAGTTGGAGCAGGGCCTGCAGGGCCTGGAGCTGTG caagaaatgcatttactcttttcatgcttacaaacttgatctgtgtttagGCTTTTGAAGGCTTTGGTACTCTTAGTGTATCTAGGCTGCTTGGGCCAGCAGACATGGTAGTTCTGTCAGTACCTGACAAGCTTATTGTCATGACATATTTGTTGCAGATCCGTGCCTTGTGTACAGGGCAAGAGCTGCAACTAGTTCAGCTGAAGGGTGGTGGCGCCTCAGGAACTCATCATGTAGACAATACCCAGCTCAGTCTGCCAGACTGCCTTGATGTAGGAGATTTGGCAAAGCAATTAAAAGAGCATGGGGCTGAGGTACCTACTGAACCTAAGGAGGCTGTCAATTGTGGGACATCAGGGGCAATCCCGAAGTTGGCCTCCAGGGATACGGACC---ACTGTTCCTCTAAGGATGGGGAGGCAGAGGTTGCACAAGAGGCAATCCCTCAAAAACCCCCTACTGATGGACCGAGAGCCAGATTGTCAACCACCCCTGTAGTTCCTGCAGAGGGGCTAGTGAATGGATTGGAGTCATCAGGAGGAGTAAGTGGTGTGAGATTGAGATGGACAACCATCAAGGGAGAGACCAGGCCAGTGCCC---CCTCGGGCATATGGATCCTTCTCACATGTAG------------TGCTGAAAAAGAGGCAATCCAGGCTGAGGAACAGTAACTCCTTTGCCGTAGATCATCGTGATTCTGGAACAACAGTGGTAGCTGGGCCTGCTGGACCTGGGGCTGTCgtacgcaataccattttgctcctgcacaaaatattgtcaagccttagtgg Alignment from Exonerate_protein2genome GCTTTTGATGGCTTCGCTGCCCTGGGTGTGTCTCGGCTGCTCGAGCCGGCGGACATGGTACTTCTGTCCGTACCTGACAAGCTCATCGTCATGACGTACCTGTGCCAGATCCGTGCCTTCTGCACTGGGCAGGAGCTGCAGCTGGTGCAACTGGAGGGCGGCGGTGGCTCTGGCACTTATCGTGTGGGCAACGCCCAGCCGAGCCTGCCCGACTGTCTGGACGCAGGAGACCTGGCGCAGCGATTACGCGAGCATGGGGCTGAAGTGCCCACAGAACCTAAGGAGGCTGTGAACCGCGGGACT---GGGGCAATACCAAAGGTGGCCTCCAGGGACACGGACCTGAGCTGCTCCTCTAAGGATGGGGAGGCAGAGGTTGCCCAGGAAGCAATCCCTCAAGAGGCGCCCACCGACGGCCCTAGAGCCAGGTCGTCCACAACCCCGGTGGTCCCTGCAGAGGGGCTGGTGAACGGAGTGGGGGCGTCAGGTGGTGTGAGTGGTGTGAGACTGAGACGGTCCTCTGTCAATGGGGAGGCTGGGCCAGTACCTCCACCCCGAGCACATGGCTCTTTCTCCCACGTGCGGGACGCCGATTTGCTAAAGAAGAGGCGATCGAGGTTAAGGAATAGCAACTCTTTCTCTGTGGATGACCAGGACTCTGGAGCTGCAGTTGGAGCAGGGCCTGCAGGGCCTGGAGCTGTG caagaaatgcatttactcttttcatgcttacaaacttgatctgtgtttagGCTTTTGAAGGCTTTGGTACTCTTAGTGTATCTAGGCTGCTTGGGCCAGCAGACATGGTAGTTCTGTCAGTACCTGACAAGCTTATTGTCATGACATATTTGTTGCAGATCCGTGCCTTGTGTACAGGGCAAGAGCTGCAACTAGTTCAGCTGAAGGGTGGTGGCGCCTCAGGAACTCATCATGTAGACAATACCCAGCTCAGTCTGCCAGACTGCCTTGATGTAGGAGATTTGGCAAAGCAATTAAAAGAGCATGGGGCTGAGGTACCTACTGAACCTAAGGAGGCTGTCAATTGTGGGACATCAGGGGCAATCCCGAAGTTGGCCTCCAGGGATACGGAC---CACTGTTCCTCTAAGGATGGGGAGGCAGAGGTTGCACAAGAGGCAATCCCTCAAAAACCCCCTACTGATGGACCGAGAGCCAGATTGTCAACCACCCCTGTAGTTCCTGCAGAGGGGCTAGTGAATGGATTGGAGTCATCAGGAGGAGTAAGTGGTGTGAGATTGAGATGGACAACCATCAAGGGAGAGACCAGGCCAGTG---CCCCCTCGGGCATATGGATCCTTCTCACATGTA------------GTGCTGAAAAAGAGGCAATCCAGGCTGAGGAACAGTAACTCCTTTGCCGTAGATCATCGTGATTCTGGAACAACAGTGGTAGCTGGGCCTGCTGGACCTGGGGCTGTCgtacgcaataccattttgctcctgcacaaaatattgtcaagccttagtgg Alignment from Exonerate_coding2genome GCTTTTGATGGCTTCGCTGCCCTGGGTGTGTCTCGGCTGCTCGAGCCGGCGGACATGGTACTTCTGTCCGTACCTGACAAGCTCATCGTCATGACGTACCTGTGCCAGATCCGTGCCTTCTGCACTGGGCAGGAGCTGCAGCTGGTGCAACTGGAGGGCGGCGGTGGCTCTGGCACTTATCGTGTGGGCAACGCCCAGCCGAGCCTGCCCGACTGTCTGGACGCAGGAGACCTGGCGCAGCGATTACGCGAGCATGGGGCTGAAGTGCCCACAGAACCTAAGGAGGCTGTGAACCGCGGGACT---GGGGCAATACCAAAGGTGGCCTCCAGGGACACGGACCTGAGCTGCTCCTCTAAGGATGGGGAGGCAGAGGTTGCCCAGGAAGCAATCCCTCAAGAGGCGCCCACCGACGGCCCTAGAGCCAGGTCGTCCACAACCCCGGTGGTCCCTGCAGAGGGGCTGGTGAACGGAGTGGGGGCGTCAGGTGGTGTGAGTGGTGTGAGACTGAGACGGTCCTCTGTCAATGGGGAGGCTGGGCCAGTACCTCCACCCCGAGCACATGGCTCTTTCTCCCACGTGCGGGACGCCGATTTGCTAAAGAAGAGGCGATCGAGGTTAAGGAATAGCAACTCTTTCTCTGTGGATGACCAGGACTCTGGAGCTGCAGTTGGAGCAGGGCCTGCAGGGCCTGGAGCTGTG caagaaatgcatttactcttttcatgcttacaaacttgatctgtgtttagGCTTTTGAAGGCTTTGGTACTCTTAGTGTATCTAGGCTGCTTGGGCCAGCAGACATGGTAGTTCTGTCAGTACCTGACAAGCTTATTGTCATGACATATTTGTTGCAGATCCGTGCCTTGTGTACAGGGCAAGAGCTGCAACTAGTTCAGCTGAAGGGTGGTGGCGCCTCAGGAACTCATCATGTAGACAATACCCAGCTCAGTCTGCCAGACTGCCTTGATGTAGGAGATTTGGCAAAGCAATTAAAAGAGCATGGGGCTGAGGTACCTACTGAACCTAAGGAGGCTGTCAATTGTGGGACATCAGGGGCAATCCCGAAGTTGGCCTCCAGGGATACGGAC---CACTGTTCCTCTAAGGATGGGGAGGCAGAGGTTGCACAAGAGGCAATCCCTCAAAAACCCCCTACTGATGGACCGAGAGCCAGATTGTCAACCACCCCTGTAGTTCCTGCAGAGGGGCTAGTGAATGGATTGGAGTCATCAGGAGGAGTAAGTGGTGTGAGATTGAGATGGACAACCATCAAGGGAGAGACCAGGCCAGTG---CCCCCTCGGGCATATGGATCCTTCTCACATGTA------------GTGCTGAAAAAGAGGCAATCCAGGCTGAGGAACAGTAACTCCTTTGCCGTAGATCATCGTGATTCTGGAACAACAGTGGTAGCTGGGCCTGCTGGACCTGGGGCTGTCgtacgcaataccattttgctcctgcacaaaatattgtcaagccttagtgg Alignment from GeneWise GCTTTTGATGGCTTCGCTGCCCTGGGTGTGTCTCGGCTGCTCGAGCCGGCGGACATGGTACTTCTGTCCGTACCTGACAAGCTCATCGTCATGACGTACCTGTGCCAGATCCGTGCCTTCTGCACTGGGCAGGAGCTGCAGCTGGTGCAACTGGAGGGCGGCGGTGGCTCTGGCACTTATCGTGTGGGCAACGCCCAGCCGAGCCTGCCCGACTGTCTGGACGCAGGAGACCTGGCGCAGCGATTACGCGAGCATGGGGCTGAAGTGCCCACAGAACCTAAGGAGGCTGTGAACCGCGGGACT---GGGGCAATACCAAAGGTGGCCTCCAGGGACACGGACCTGAGCTGCTCCTCTAAGGATGGGGAGGCAGAGGTTGCCCAGGAAGCAATCCCTCAAGAGGCGCCCACCGACGGCCCTAGAGCCAGGTCGTCCACAACCCCGGTGGTCCCTGCAGAGGGGCTGGTGAACGGAGTGGGGGCGTCAGGTGGTGTGAGTGGTGTGAGACTGAGACGGTCCTCTGTCAATGGGGAGGCTGGGCCAGTACCTCCACCCCGAGCACATGGCTCTTTCTCCCACGTGCGGGACGCCGATTTGCTAAAGAAGAGGCGATCGAGGTTAAGGAATAGCAACTCTTTCTCTGTGGATGACCAGGACTCTGGAGCTGCAGTTGGAGCAGGGCCTGCAGGGCCTGGAGCTGTG caagaaatgcatttactcttttcatgcttacaaacttgatctgtgtttagGCTTTTGAAGGCTTTGGTACTCTTAGTGTATCTAGGCTGCTTGGGCCAGCAGACATGGTAGTTCTGTCAGTACCTGACAAGCTTATTGTCATGACATATTTGTTGCAGATCCGTGCCTTGTGTACAGGGCAAGAGCTGCAACTAGTTCAGCTGAAGGGTGGTGGCGCCTCAGGAACTCATCATGTAGACAATACCCAGCTCAGTCTGCCAGACTGCCTTGATGTAGGAGATTTGGCAAAGCAATTAAAAGAGCATGGGGCTGAGGTACCTACTGAACCTAAGGAGGCTGTCAATTGTGGGACATCAGGGGCAATCCCGAAGTTGGCCTCCAGGGATACGGAC---CACTGTTCCTCTAAGGATGGGGAGGCAGAGGTTGCACAAGAGGCAATCCCTCAAAAACCCCCTACTGATGGACCGAGAGCCAGATTGTCAACCACCCCTGTAGTTCCTGCAGAGGGGCTAGTGAATGGATTGGAGTCATCAGGAGGAGTAAGTGGTGTGAGATTGAGATGGACAACCATCAAGGGAGAGACCAGGCCAGTGCCCCCT---CGGGCATATGGATCCTTCTCACATGTA------------GTGCTGAAAAAGAGGCAATCCAGGCTGAGGAACAGTAACTCCTTTGCCGTAGATCATCGTGATTCTGGAACAACAGTGGTAGCTGGGCCTGCTGGACCTGGGGCTGTCgtacgcaataccattttgctcctgcacaaaatattgtcaagccttagtgg #### Ehbp1l1_ID1224_11 --> 1 - 0 Original Alignment cGATTATTTCTCCCTTGATCCCCTCAACATCAAACAGAACAACAAGCAG taacatgtaacagaatacctatagtcaaacagctgttttcccctttaaagtGATTATTTCTCCCTTGATCCCCTCAACATCAAACAGAACAAAAAGCAGgtaagagaaggtaagaaatgacctttaattcttacagataacagactaat Alignment from CESAR cGATTATTTCTCCCTTGATCCCCTCAACATCAAACAGAACAACAAGCAG taacatgtaacagaatacctatagtcaaacagctgttttcccctttaaagtGATTATTTCTCCCTTGATCCCCTCAACATCAAACAGAACAAAAAGCAGgtaagagaaggtaagaaatgacctttaattcttacagataacagactaat Alignment from Spaln_aa2Genome CGATTATTTCTCCCTTGATCCCCTCAACATCAAACAGAACAACAAGCAG taacatgtaacagaatacctatagtcaaacagctgttttcccctttaaagTGATTATTTCTCCCTTGATCCCCTCAACATCAAACAGAACAAAAAGCAGgtaagagaaggtaagaaatgacctttaattcttacagataacagactaat Alignment from Spaln_nt2Genome CGATTATTTCTCCCTTGATCCCCTCAACATCAAACAGAACAACAAGCAG taacatgtaacagaatacctatagtcaaacagctgttttcccctttaaagTGATTATTTCTCCCTTGATCCCCTCAACATCAAACAGAACAAAAAGCAGgtaagagaaggtaagaaatgacctttaattcttacagataacagactaat Alignment from Pairagon CGATTATTTCTCCCTTGATCCCCTCAACATCAAACAGAACAACAAGCAG taacatgtaacagaatacctatagtcaaacagctgttttcccctttaaagTGATTATTTCTCCCTTGATCCCCTCAACATCAAACAGAACAAAAAGCAGgtaagagaaggtaagaaatgacctttaattcttacagataacagactaat Alignment from Exonerate_protein2genome CGATTATTTCTCCCTTGATCCCCTCAACATCAAACAGAACAACAAGCAG taacatgtaacagaatacctatagtcaaacagctgttttcccctttaaagTGATTATTTCTCCCTTGATCCCCTCAACATCAAACAGAACAAAAAGCAGgtaagagaaggtaagaaatgacctttaattcttacagataacagactaat Alignment from Exonerate_coding2genome CGATTATTTCTCCCTTGATCCCCTCAACATCAAACAGAACAACAAGCAG taacatgtaacagaatacctatagtcaaacagctgttttcccctttaaagTGATTATTTCTCCCTTGATCCCCTCAACATCAAACAGAACAAAAAGCAGgtaagagaaggtaagaaatgacctttaattcttacagataacagactaat Alignment from GeneWise CGATTATTTCTCCCTTGATCCCCTCAACATCAAACAGAACAACAAGCAG taacatgtaacagaatacctatagtcaaacagctgttttcccctttaaagTGATTATTTCTCCCTTGATCCCCTCAACATCAAACAGAACAAAAAGCAGgtaagagaaggtaagaaatgacctttaattcttacagataacagactaat #### Ehbp1l1_ID1232_3 --> 0 - 0 Original Alignment GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG gttcacacccagcccagccctaagcttaattgtctggggtactttttcagGGTCATAGCTGGCAACCTGGCATTCAGAACCCCTATCATGGCACTGCAGTATGGATGGTTCCTGAAAATGTGGATATTTCTGTAATGCTGCACAAGgtaagtacaggtgtggtgggaggcacagcagggagtgggccccgtgaaag Alignment from CESAR GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG gttcacacccagcccagccctaagcttaattgtctggggtactttttcagGGTCATAGCTGGCAACCTGGCATTCAGAACCCCTATCATGGCACTGCAGTATGGATGGTTCCTGAAAATGTGGATATTTCTGTAATGCTGCACAAGgtaagtacaggtgtggtgggaggcacagcagggagtgggccccgtgaaag Alignment from Spaln_aa2Genome GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG gttcacacccagcccagccctaagcttaattgtctggggtactttttcagGGTCATAGCTGGCAACCTGGCATTCAGAACCCCTATCATGGCACTGCAGTATGGATGGTTCCTGAAAATGTGGATATTTCTGTAATGCTGCACAAGgtaagtacaggtgtggtgggaggcacagcagggagtgggccccgtgaaag Alignment from Spaln_nt2Genome GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG gttcacacccagcccagccctaagcttaattgtctggggtactttttcagGGTCATAGCTGGCAACCTGGCATTCAGAACCCCTATCATGGCACTGCAGTATGGATGGTTCCTGAAAATGTGGATATTTCTGTAATGCTGCACAAGgtaagtacaggtgtggtgggaggcacagcagggagtgggccccgtgaaag Alignment from Pairagon GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG gttcacacccagcccagccctaagcttaattgtctggggtactttttcagGGTCATAGCTGGCAACCTGGCATTCAGAACCCCTATCATGGCACTGCAGTATGGATGGTTCCTGAAAATGTGGATATTTCTGTAATGCTGCACAAGgtaagtacaggtgtggtgggaggcacagcagggagtgggccccgtgaaag Alignment from Exonerate_protein2genome gttcacacccagcccagccctaagcttaattgtctggggtactttttcagggtcatagctggcaacctggcattcagaacccctatcatggcactgcagtatggatggttcctgaaaatgtggatatttctgtaatgctgcacaaggtaagtacaggtgtggtgggaggcacagcagggagtgggccccgtgaaag Alignment from Exonerate_coding2genome gttcacacccagcccagccctaagcttaattgtctggggtactttttcagggtcatagctggcaacctggcattcagaacccctatcatggcactgcagtatggatggttcctgaaaatgtggatatttctgtaatgctgcacaaggtaagtacaggtgtggtgggaggcacagcagggagtgggccccgtgaaag Alignment from GeneWise GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG gttcacacccagcccagccctaagcttaattgtctggggtactttttcagGGTCATAGCTGGCAACCTGGCATTCAGAACCCCTATCATGGCACTGCAGTATGGATGGTTCCTGAAAATGTGGATATTTCTGTAATGCTGCACAAGgtaagtacaggtgtggtgggaggcacagcagggagtgggccccgtgaaag #### Ehbp1l1_ID1233_2 --> 1 - 0 Original Alignment gCAGCCTGACAAGCTGGTGGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAG gacatcttgggatggactggctaactggtgtgtcgtccctgtgcctacaggCAGCCTGACAAACTGGTGGTGGTATGGACTCAACGGAATCGGAGGATCTGCTCTAAAgtgagtaagaataatttgaattgaactcttatattgatcccttatgtttt Alignment from CESAR gCAGCCTGACAAGCTGGTGGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAG gacatcttgggatggactggctaactggtgtgtcgtccctgtgcctacaggCAGCCTGACAAACTGGTGGTGGTATGGACTCAACGGAATCGGAGGATCTGCTCTAAAgtgagtaagaataatttgaattgaactcttatattgatcccttatgtttt Alignment from Spaln_aa2Genome GCAGCCTGACAAGCTGGTGGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAG gacatcttgggatggactggctaactggtgtgtcgtccctgtgcctacagGCAGCCTGACAAACTGGTGGTGGTATGGACTCAACGGAATCGGAGGATCTGCTCTAAAgtgagtaagaataatttgaattgaactcttatattgatcccttatgtttt Alignment from Spaln_nt2Genome GCAGCCTGACAAGCTGGTGGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAG gacatcttgggatggactggctaactggtgtgtcgtccctgtgcctacagGCAGCCTGACAAACTGGTGGTGGTATGGACTCAACGGAATCGGAGGATCTGCTCTAAAgtgagtaagaataatttgaattgaactcttatattgatcccttatgtttt Alignment from Pairagon GCAGCCTGACAAGCTGGTGGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAG gacatcttgggatggactggctaactggtgtgtcgtccctgtgcctacagGCAGCCTGACAAACTGGTGGTGGTATGGACTCAACGGAATCGGAGGATCTGCTCTAAAgtgagtaagaataatttgaattgaactcttatattgatcccttatgtttt Alignment from Exonerate_protein2genome gacatcttgggatggactggctaactggtgtgtcgtccctgtgcctacaggcagcctgacaaactggtggtggtatggactcaacggaatcggaggatctgctctaaagtgagtaagaataatttgaattgaactcttatattgatcccttatgtttt Alignment from Exonerate_coding2genome gacatcttgggatggactggctaactggtgtgtcgtccctgtgcctacaggcagcctgacaaactggtggtggtatggactcaacggaatcggaggatctgctctaaagtgagtaagaataatttgaattgaactcttatattgatcccttatgtttt Alignment from GeneWise GCAGCCTGACAAGCTGGTGGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAG gacatcttgggatggactggctaactggtgtgtcgtccctgtgcctacagGCAGCCTGACAAACTGGTGGTGGTATGGACTCAACGGAATCGGAGGATCTGCTCTAAAgtgagtaagaataatttgaattgaactcttatattgatcccttatgtttt #### Ehd1_ID1563_4 --> 0 - 0 Original Alignment GTCCATGCCTACATCATCAGCTCCCTCAAGAAGGAGATGCCCAATGTTTTCGGGAAAGAGAGCAAGAAGAAAGAGCTGGTGAACAACCTGGGAGAGATCTACCAGAAGATCGAGCGGGAGCACCAGATCTCCTCCGGCGACTTC---CCAAGCCTGCGTAAGATGCAG aagggtagaatgatgagctagttgaataatctctcctgcttgctttccagGTCCATGCCTTTATTATCAGTACTCTCAGGAAGGAGACGCCCAACGTCTTTGAAAAA---AGCAAGAAGGAGGAACTAGTGAACAACCTGGGAGAAATCTACCAAAAA---------GAACACCAGATCTCCCCTGGTGACTTCCCTCCA---ATGCGTAAGATTCAGgtacgttcaactctgttcagctgcatagccttgctgatatcataaactga Alignment from CESAR GTCCATGCCTACATCATCAGCTCCCTCAAGAAGGAGATGCCCAATGTTTTCGGGAAAGAGAGCAAGAAGAAAGAGCTGGTGAACAACCTGGGAGAGATCTACCAGAAGATCGAGCGGGAGCACCAGATCTCCTCCGGCGACTTCCCAAGCCTGCGTAAGATGCAG aagggtagaatgatgagctagttgaataatctctcctgcttgctttccagGTCCATGCCTTTATTATCAGTACTCTCAGGAAGGAGACGCCCAACGTCTTTGAAAAA---AGCAAGAAGGAGGAACTAGTGAACAACCTGGGAGAAATCTACCAAAAA---------GAACACCAGATCTCCCCTGGTGACTTCCCTCCAATGCGTAAGATTCAGgtacgttcaactctgttcagctgcatagccttgctgatatcataaactga Alignment from Spaln_aa2Genome GTCCATGCCTACATCATCAGCTCCCTCAAGAAGGAGATGCCCAATGTTTTCGGGAAAGAGAGCAAGAAGAAAGAGCTGGTGAACAACCTGGGAGAGATCTACCAGAAGATCGAGCGGGAGCACCAGATCTCCTCCGGCGACTTCCCAAGCCTGCGTAAGATGCAG aagggtagaatgatgagctagttgaataatctctcctgcttgctttccagGTCCATGCCTTTATTATCAGTACTCTCAGGAAGGAGACGCCCAACGTCTTTGAAAAA---AGCAAGAAGGAGGAACTAGTGAACAACCTGGGAGAAATCTACCAAAAA---------GAACACCAGATCTCCCCTGGTGACTTCCCTCCAATGCGTAAGATTCAGgtacgttcaactctgttcagctgcatagccttgctgatatcataaactga Alignment from Spaln_nt2Genome GTCCATGCCTACATCATCAGCTCCCTCAAGAAGGAGATGCCCAATGTTTTCGGGAAAGAGAGCAAGAAGAAAGAGCTGGTGAACAACCTGGGAGAGATCTACCAGAAGATCGAGCGGGAGCACCAGATCTCCTCCGGCGACTTCCCAAGCCTGCGTAAGATGCAG aagggtagaatgatgagctagttgaataatctctcctgcttgctttccagGTCCATGCCTTTATTATCAGTACTCTCAGGAAGGAGACGCCCAACGTCTTTG---AAAAAAGCAAGAAGGAGGAACTAGTGAACAACCTGGGAGAAATCTACCAAAA---------AGAACACCAGATCTCCCCTGGTGACTTCCCTCCAATGCGTAAGATTCAGgtacgttcaactctgttcagctgcatagccttgctgatatcataaactga Alignment from Pairagon GTCCATGCCTACATCATCAGCTCCCTCAAGAAGGAGATGCCCAATGTTTTCGGGAAAGAGAGCAAGAAGAAAGAGCTGGTGAACAACCTGGGAGAGATCTACCAGAAGATCGAGCGGGAGCACCAGATCTCCTCCGGCGACTTCCCAAGCCTGCGTAAGATGCAG aagggtagaatgatgagctagttgaataatctctcctgcttgctttccagGTCCATGCCTTTATTATCAGTACTCTCAGGAAGGAGACGCCCAACGTCTTTG---AAAAAAGCAAGAAGGAGGAACTAGTGAACAACCTGGGAGAAATCTACCAAAA---------AGAACACCAGATCTCCCCTGGTGACTTCCCTCCAATGCGTAAGATTCAGgtacgttcaactctgttcagctgcatagccttgctgatatcataaactga Alignment from Exonerate_protein2genome GTCCATGCCTACATCATCAGCTCCCTCAAGAAGGAGATGCCCAATGTTTTCGGGAAAGAGAGCAAGAAGAAAGAGCTGGTGAACAACCTGGGAGAGATCTACCAGAAGATCGAGCGGGAGCACCAGATCTCCTCCGGCGACTTCCCAAGCCTGCGTAAGATGCAG aagggtagaatgatgagctagttgaataatctctcctgcttgctttccagGTCCATGCCTTTATTATCAGTACTCTCAGGAAGGAGACGCCCAACGTCTTTGAAAAA---AGCAAGAAGGAGGAACTAGTGAACAACCTGGGAGAAATCTACCAAAAA---------GAACACCAGATCTCCCCTGGTGACTTCCCTCCAATGCGTAAGATTCAGgtacgttcaactctgttcagctgcatagccttgctgatatcataaactga Alignment from Exonerate_coding2genome GTCCATGCCTACATCATCAGCTCCCTCAAGAAGGAGATGCCCAATGTTTTCGGGAAAGAGAGCAAGAAGAAAGAGCTGGTGAACAACCTGGGAGAGATCTACCAGAAGATCGAGCGGGAGCACCAGATCTCCTCCGGCGACTTCCCAAGCCTGCGTAAGATGCAG aagggtagaatgatgagctagttgaataatctctcctgcttgctttccagGTCCATGCCTTTATTATCAGTACTCTCAGGAAGGAGACGCCCAACGTCTTTGAAAAA---AGCAAGAAGGAGGAACTAGTGAACAACCTGGGAGAAATCTACCAAAAA---------GAACACCAGATCTCCCCTGGTGACTTCCCTCCAATGCGTAAGATTCAGgtacgttcaactctgttcagctgcatagccttgctgatatcataaactga Alignment from GeneWise GTCCATGCCTACATCATCAGCTCCCTCAAGAAGGAGATGCCCAATGTTTTCGGGAAAGAGAGCAAGAAGAAAGAGCTGGTGAACAACCTGGGAGAGATCTACCAGAAGATCGAGCGGGAGCACCAGATCTCCTCCGGCGACTTCCCAAGCCTGCGTAAGATGCAG aagggtagaatgatgagctagttgaataatctctcctgcttgctttccagGTCCATGCCTTTATTATCAGTACTCTCAGGAAGGAGACGCCCAACGTCTTTGAAAAA---AGCAAGAAGGAGGAACTAGTGAACAACCTGGGAGAAATCTACCAAAAA---------GAACACCAGATCTCCCCTGGTGACTTCCCTCCAATGCGTAAGATTCAGgtacgttcaactctgttcagctgcatagccttgctgatatcataaactga #### Eif1ad_ID951_4 --> 1 - 2 Original Alignment gCCTGAGGCCTTCTCTGAGGTAGCTGAGAAACAGAACAATATGAACag ctgcgagagtgtgctgtggtggtccatctgattcttcttttctaaaacaggCCAGAGGCATTCTCTGAGGTTGCTGAGAAGCAGAACAATATGAATaggtaagtgggccccaccggtccaagaggatacaatggctacatgaatacct Alignment from CESAR gCCTGAGGCCTTCTCTGAGGTAGCTGAGAAACAGAACAATATGAACag ctgcgagagtgtgctgtggtggtccatctgattcttcttttctaaaacaggCCAGAGGCATTCTCTGAGGTTGCTGAGAAGCAGAACAATATGAATaggtaagtgggccccaccggtccaagaggatacaatggctacatgaatacct Alignment from Spaln_aa2Genome GCCTGAGGCCTTCTCTGAGGTAGCTGAGAAACAGAACAATATGAACAG ctgcgagagtgtgctgtggtggtccatctgattcttcttttctaaaacagGCCAGAGGCATTCTCTGAGGTTGCTGAGAAGCAGAACAATATGAATAGgtaagtgggccccaccggtccaagaggatacaatggctacatgaatacct Alignment from Spaln_nt2Genome GCCTGAGGCCTTCTCTGAGGTAGCTGAGAAACAGAACAATATGAACAG ctgcgagagtgtgctgtggtggtccatctgattcttcttttctaaaacagGCCAGAGGCATTCTCTGAGGTTGCTGAGAAGCAGAACAATATGAATAGgtaagtgggccccaccggtccaagaggatacaatggctacatgaatacct Alignment from Pairagon GCCTGAGGCCTTCTCTGAGGTAGCTGAGAAACAGAACAATATGAACAG ctgcgagagtgtgctgtggtggtccatctgattcttcttttctaaaacagGCCAGAGGCATTCTCTGAGGTTGCTGAGAAGCAGAACAATATGAATAGgtaagtgggccccaccggtccaagaggatacaatggctacatgaatacct Alignment from Exonerate_protein2genome GCCTGAGGCCTTCTCTGAGGTAGCTGAGAAACAGAACAATATGAACAG ctgcgagagtgtgctgtggtggtccatctgattcttcttttctaaaacagGCCAGAGGCATTCTCTGAGGTTGCTGAGAAGCAGAACAATATGAATAGgtaagtgggccccaccggtccaagaggatacaatggctacatgaatacct Alignment from Exonerate_coding2genome GCCTGAGGCCTTCTCTGAGGTAGCTGAGAAACAGAACAATATGAACAG ctgcgagagtgtgctgtggtggtccatctgattcttcttttctaaaacagGCCAGAGGCATTCTCTGAGGTTGCTGAGAAGCAGAACAATATGAATAGgtaagtgggccccaccggtccaagaggatacaatggctacatgaatacct Alignment from GeneWise GCCTGAGGCCTTCTCTGAGGTAGCTGAGAAACAGAACAATATGAACAG ctgcgagagtgtgctgtggtggtccatctgattcttcttttctaaaacagGCCAGAGGCATTCTCTGAGGTTGCTGAGAAGCAGAACAATATGAATAGgtaagtgggccccaccggtccaagaggatacaatggctacatgaatacct #### Eif3a_ID13309_21 --> 1 - 1 Original Alignment gGATGAAGGTGGCTGGAGAAGAGGACCAGCAGAAGAATCTTCAAGCTGGAGAGATTCAAGTCGCCGTGATGATAGGGACAGGGAAGACCGTCGACGGGATAGAGATGATCGTCGTGATCTGAGAGACCTGAGAGACAGAAGGGATTTAAGAGATGATAGAGATCGGAGAGGACCTCCCCTCAGATCAGAGCGAGAAGAAg aaacacagtataagtgctggcagatagtcaatgttgtaattttttttcagaGATGAAGGTGGCTGGAGGAAAGAACCAACTGAGGAATCATCAATTTGGAGAGATTCCAGCCGCCAAGGTGATAGGGATCATGAAGATTATCAACGGGATAGAGACGAGCGTCATGATTTGAGAGATCTGAGAGACAGAAAGGATTTAGGGGATGATAGAGATAGGAGAGGACCTCCCCTT---ACTGAGCGAGAAAAAggtgagttggttgttatgtcccaggcagtaacatggacatccttgagccta Alignment from CESAR gGATGAAGGTGGCTGGAGAAGAGGACCAGCAGAAGAATCTTCAAGCTGGAGAGATTCAAGTCGCCGTGATGATAGGGACAGGGAAGACCGTCGACGGGATAGAGATGATCGTCGTGATCTGAGAGACCTGAGAGACAGAAGGGATTTAAGAGATGATAGAGATCGGAGAGGACCTCCCCTCAGATCAGAGCGAGAAGAAg aaacacagtataagtgctggcagatagtcaatgttgtaattttttttcagaGATGAAGGTGGCTGGAGGAAAGAACCAACTGAGGAATCATCAATTTGGAGAGATTCCAGCCGCCAAGGTGATAGGGATCATGAAGATTATCAACGGGATAGAGACGAGCGTCATGATTTGAGAGATCTGAGAGACAGAAAGGATTTAGGGGATGATAGAGATAGGAGAGGACCTCCCCTT---ACTGAGCGAGAAAAAggtgagttggttgttatgtcccaggcagtaacatggacatccttgagccta Alignment from Spaln_aa2Genome GGATGAAGGTGGCTGGAGAAGAGGACCAGCAGAAGAATCTTCAAGCTGGAGAGATTCAAGTCGCCGTGATGATAGGGACAGGGAAGACCGTCGACGGGATAGAGATGATCGTCGTGATCTGAGAGACCTGAGAGACAGAAGGGATTTAAGAGATGATAGAGATCGGAGAGGACCTCCCCTCAGATCAGAGCGAGAAGAAG aaacacagtataagtgctggcagatagtcaatgttgtaattttttttcagAGATGAAGGTGGCTGGAGGAAAGAACCAACTGAGGAATCATCAATTTGGAGAGATTCCAGCCGCCAAGGTGATAGGGATCATGAAGATTATCAACGGGATAGAGACGAGCGTCATGATTTGAGAGATCTGAGAGACAGAAAGGATTTAGGGGATGATAGAGATAGGAGAGGACCTCCCCTT---ACTGAGCGAGAAAAAGgtgagttggttgttatgtcccaggcagtaacatggacatccttgagccta Alignment from Spaln_nt2Genome GGATGAAGGTGGCTGGAGAAGAGGACCAGCAGAAGAATCTTCAAGCTGGAGAGATTCAAGTCGCCGTGATGATAGGGACAGGGAAGACCGTCGACGGGATAGAGATGATCGTCGTGATCTGAGAGACCTGAGAGACAGAAGGGATTTAAGAGATGATAGAGATCGGAGAGGACCTCCCCTCAGATCAGAGCGAGAAGAAG aaacacagtataagtgctggcagatagtcaatgttgtaattttttttcagAGATGAAGGTGGCTGGAGGAAAGAACCAACTGAGGAATCATCAATTTGGAGAGATTCCAGCCGCCAAGGTGATAGGGATCATGAAGATTATCAACGGGATAGAGACGAGCGTCATGATTTGAGAGATCTGAGAGACAGAAAGGATTTAGGGGATGATAGAGATAGGAGAGGACCTCCCCTTA---CTGAGCGAGAAAAAGgtgagttggttgttatgtcccaggcagtaacatggacatccttgagccta Alignment from Pairagon GGATGAAGGTGGCTGGAGAAGAGGACCAGCAGAAGAATCTTCAAGCTGGAGAGATTCAAGTCGCCGTGATGATAGGGACAGGGAAGACCGTCGACGGGATAGAGATGATCGTCGTGATCTGAGAGACCTGAGAGACAGAAGGGATTTAAGAGATGATAGAGATCGGAGAGGACCTCCCCTCAGATCAGAGCGAGAAGAAG aaacacagtataagtgctggcagatagtcaatgttgtaattttttttcagAGATGAAGGTGGCTGGAGGAAAGAACCAACTGAGGAATCATCAATTTGGAGAGATTCCAGCCGCCAAGGTGATAGGGATCATGAAGATTATCAACGGGATAGAGACGAGCGTCATGATTTGAGAGATCTGAGAGACAGAAAGGATTTAGGGGATGATAGAGATAGGAGAGGACCTCCCCTTA---CTGAGCGAGAAAAAGgtgagttggttgttatgtcccaggcagtaacatggacatccttgagccta Alignment from Exonerate_protein2genome GGATGAAGGTGGCTGGAGAAGAGGACCAGCAGAAGAATCTTCAAGCTGGAGAGATTCAAGTCGCCGTGATGATAGGGACAGGGAAGACCGTCGACGGGATAGAGATGATCGTCGTGATCTGAGAGACCTGAGAGACAGAAGGGATTTAAGAGATGATAGAGATCGGAGAGGACCTCCCCTCAGATCAGAGCGAGAAGAAG aaacacagtataagtgctggcagatagtcaatgttgtaattttttttcagAGATGAAGGTGGCTGGAGGAAAGAACCAACTGAGGAATCATCAATTTGGAGAGATTCCAGCCGCCAAGGTGATAGGGATCATGAAGATTATCAACGGGATAGAGACGAGCGTCATGATTTGAGAGATCTGAGAGACAGAAAGGATTTAGGGGATGATAGAGATAGGAGAGGACCTCCCCTT---ACTGAGCGAGAAAAAGgtgagttggttgttatgtcccaggcagtaacatggacatccttgagccta Alignment from Exonerate_coding2genome GGATGAAGGTGGCTGGAGAAGAGGACCAGCAGAAGAATCTTCAAGCTGGAGAGATTCAAGTCGCCGTGATGATAGGGACAGGGAAGACCGTCGACGGGATAGAGATGATCGTCGTGATCTGAGAGACCTGAGAGACAGAAGGGATTTAAGAGATGATAGAGATCGGAGAGGACCTCCCCTCAGATCAGAGCGAGAAGAAG aaacacagtataagtgctggcagatagtcaatgttgtaattttttttcagAGATGAAGGTGGCTGGAGGAAAGAACCAACTGAGGAATCATCAATTTGGAGAGATTCCAGCCGCCAAGGTGATAGGGATCATGAAGATTATCAACGGGATAGAGACGAGCGTCATGATTTGAGAGATCTGAGAGACAGAAAGGATTTAGGGGATGATAGAGATAGGAGAGGACCTCCCCTT---ACTGAGCGAGAAAAAGgtgagttggttgttatgtcccaggcagtaacatggacatccttgagccta Alignment from GeneWise GGATGAAGGTGGCTGGAGAAGAGGACCAGCAGAAGAATCTTCAAGCTGGAGAGATTCAAGTCGCCGTGATGATAGGGACAGGGAAGACCGTCGACGGGATAGAGATGATCGTCGTGATCTGAGAGACCTGAGAGACAGAAGGGATTTAAGAGATGATAGAGATCGGAGAGGACCTCCCCTCAGATCAGAGCGAGAAGAAG aaacacagtataagtgctggcagatagtcaatgttgtaattttttttcagAGATGAAGGTGGCTGGAGGAAAGAACCAACTGAGGAATCATCAATTTGGAGAGATTCCAGCCGCCAAGGTGATAGGGATCATGAAGATTATCAACGGGATAGAGACGAGCGTCATGATTTGAGAGATCTGAGAGACAGAAAGGATTTAGGGGATGATAGAGATAGGAGAGGACCTCCCCTT---ACTGAGCGAGAAAAAGgtgagttggttgttatgtcccaggcagtaacatggacatccttgagccta #### Eif3a_ID13311_19 --> 1 - 1 Original Alignment gGAGTGGAGACGAGAAACTCGGGATGATGAGAGGCCTCACAGGAGAGATGAGGATCGGCTGAGGCGCTTGGGGGGTGACGATGAAGAGAGAGAGTCTTCTCTTAGACCGGATGATGATCGTATCCCCAGGCGTGGCCTGGATGATGACAGAGGGCCTAGACGTGGTCCCGATGAAGATAGATTTTCTCGTAGAGGAACAGATGATGACCGTCCTTCCTGGCGTAATGCAGATGATGATAGGCCTCCCAGGCGAATTGGTGATGATGACAGGGGAAGCTGGCGTCACACAGATGACGACAGACCACCCAGACGGGGACTGGATGATGAGAGAGGAAGCTGGCGTACAGCAGATGAGGACAGAGGACCTAGACGAGGGATGGATGATGACCGGGGGCCAAGACGAGGAGGTGCTGATGATGAACGGTCATCCTGGCGGAATGCTGATGATGATAGGGGTCCCAGGAGAGGCATGGATGATGATAGGGGTCCC---AGGCGAGGGCTGGATGATGACCGAGGACCTTGGAGGAATGCTGCTGAAGATAGGATTTCCAGGAGAGGTGCAGATGATGACCGAGGGCCTTGGAGAAATATGGATGATGATAGGGTTCCTAGAAGGGGTGATGATGCAAGACCTGGTCCTTGGAGACCATTTGTCAAGCCAg gcacatccctacatctgtttttggcacccccctcattactcccttctcaggGAATGGCAACAGGAGGCTCGAGATGATGACAGGCCTCATAGAAGTGATGAGGATCGATTACGACGCTTGGGAGGTGATGATGAGGAAAGTGAATCCTGTCTGAGGCCAGATGATGATCGCATCCCGAAACATGGTCTAGATGAT------GGGCCAAGATGTGGTCCTGATGAGGAGAGGTTCTCATGTAAAGGAACTGATGATGATCGTCCTTCCTGGCGTAATTCAGATGATGACAGG------------ATACGTGATGATGATAACGGAAGTTGGCATCACATGGATGATGACCGACCACCCAGATGGGGACTAGAT---GAAAAA---GGGTGG------GCAGATGGGGATAAAGGGCCCAGGCAAGGCATGGATGATGATCGAGGGCCTCGACATGGAGGTGCTGATGATGAACAGCTATCTTGGCGGAATGCTGATGATGACAGGGGACCCCAAAGGGGCATGGATGAAGATGAT------GAACCTCATGGGCTCGATGATGACCAGAGTCCTTGGAGAAATGGTGCA---GATAGGATATCCAGGAGAGGATTGGATGATGATAGAGGTCCCTGGAGGAATATGGATGATGATCGGGTTCTTATAAGGGATGATGATGCAAGACCTGGGCCC------------ATGAAGCCTggtcagtttctgagtttgaaaccacaattacgtgtcaccatgccacaatgt Alignment from CESAR gGAGTGGAGACGAGAAACTCGGGATGATGAGAGGCCTCACAGGAGAGATGAGGATCGGCTGAGGCGCTTGGGGGGTGACGATGAAGAGAGAGAGTCTTCTCTTAGACCGGATGATGATCGTATCCCCAGGCGTGGCCTGGATGATGACAGAGGGCCTAGACGTGGTCCCGATGAAGATAGATTTTCTCGTAGAGGAACAGATGATGACCGTCCTTCCTGGCGTAATGCAGATGATGATAGGCCTCCCAGGCGAATTGGTGATGATGACAGGGGAAGCTGGCGTCACACAGATGACGACAGACCACCCAGACGGGGACTGGATGATGAGAGAGGAAGCTGGCGTACAGCAGATGAGGACAGAGGACCTAGACGAGGGATGGATGATGACCGGGGGCCAAGACGAGGAGGTGCTGATGATGAACGGTCATCCTGGCGGAATGCTGATGATGATAGGGGTCCCAGGAGAGGCATGGATGATGATAGGGGTCCCAGGCGAGGGCTGGATGATGACCGAGGACCTTGGAGGAATGCTGCTGAAGATAGGATTTCCAGGAGAGGTGCAGATGATGACCGAGGGCCTTGGAGAAATATGGATGATGATAGGGTTCCTAGAAGGGGTGATGATGCAAGACCTGGTCCTTGGAGACCATTTGTCAAGCCAg gcacatccctacatctgtttttggcacccccctcattactcccttctcaggGAATGGCAACAGGAGGCTCGAGATGATGACAGGCCTCATAGAAGTGATGAGGATCGATTACGACGCTTGGGAGGTGATGATGAGGAAAGTGAATCCTGTCTGAGGCCAGATGATGATCGCATCCCGAAACATGGTCTAGATGAT------GGGCCAAGATGTGGTCCTGATGAGGAGAGGTTCTCATGTAAAGGAACTGATGATGATCGTCCTTCCTGGCGTAATTCAGATGATGACAGG------------ATACGTGATGATGATAACGGAAGTTGGCATCACATGGATGATGACCGACCACCCAGATGGGGACTA---GATGAAAAAGGG---TGG------GCAGATGGGGATAAAGGGCCCAGGCAAGGCATGGATGATGATCGAGGGCCTCGACATGGAGGTGCTGATGATGAACAGCTATCTTGGCGGAATGCTGATGATGACAGGGGACCCCAAAGGGGCATGGATGAAGATGATGAACCT---CATGGGCTCGATGATGACCAGAGTCCTTGGAGAAATGGTGCA---GATAGGATATCCAGGAGAGGATTGGATGATGATAGAGGTCCCTGGAGGAATATGGATGATGATCGGGTTCTTATAAGGGATGATGATGCAAGACCTGGGCCC------------ATGAAGCCTggtcagtttctgagtttgaaaccacaattacgtgtcaccatgccacaatgt Alignment from Spaln_aa2Genome GGAGTGGAGACGAGAAACTCGGGATGATGAGAGGCCTCACAGGAGAGATGAGGATCGGCTGAGGCGCTTGGGGGGTGACGATGAAGAGAGAGAGTCTTCTCTTAGACCGGATGATGATCGTATCCCCAGGCGTGGCCTGGATGATGACAGAGGGCCTAGACGTGGTCCCGATGAAGATAGATTTTCTCGTAGAGGAACAGATGATGACCGTCCTTCCTGGCGTAATGCAGATGATGATAGGCCTCCCAGGCGAATTGGTGATGATGACAGGGGAAGCTGGCGTCACACAGATGACGACAGACCACCCAGACGGGGACTGGATGATGAGAGAGGAAGCTGGCGTACAGCAGATGAGGACAGAGGACCTAGACGAGGGATGGATGATGACCGGGGGCCAAGACGAGGAGGTGCTGATGATGAACGGTCATCCTGGCGGAATGCTGATGATGATAGGGGTCCCAGGAGAGGCATGGATGATGATAGGGGTCCCAGGCG AGGGCTGGATGATGACCGAGGACCTTGGAGGAATGCTGCTGAAGATAGGATTTCCAGGAGAGGTGCAGATGATGACCGAGGGCCTTGGAGAAATATGGATGATGATAGGGTTCCTAGAAGGGGTGATGATGCAAGACCTGGTCCTTGGAGACCATTTGTCAAGCCAG gcacatccctacatctgtttttggcacccccctcattactcccttctcagGGAATGGCAACAGGAGGCTCGAGATGATGACAGGCCTCATAGAAGTGATGAGGATCGATTACGACGCTTGGGAGGTGATGATGAGGAAAGTGAATCCTGTCTGAGGCCAGATGATGATCGCATCCCGAAACATGGTCTAGATGAT------GGGCCAAGATGTGGTCCTGATGAGGAGAGGTTCTCATGTAAAGGAACTGATGATGATCGTCCTTCCTGGCGTAATTCAGATGATGAC------------AGGATACGTGATGATGATAACGGAAGTTGGCATCACATGGATGATGACCGACCACCCAGATGGGGACTAGATGAAAAA------GGGTGG------GCAGATGGGGATAAAGGGCCCAGGCAAGGCATGGATGATGATCGAGGGCCTCGACATGGAGGTGCTGATGATGAACAGCTATCTTGGCGGAATGCTGATGATGACAGGGGACCCCAAAGGGGCATGGATGAAGATGATGAACCTCATGGgctcgatgatgaccagagtccttggagaaatggtgcagataggatatccaggagAGGATTGGATGATGATAGAGGTCCCTGGAGGAAT------------------------------------------------------------ATGGATGATGATCGGGTTCTTATAAGGGATGATGATGCAAGACCTGGGCCC------------ATGAAGCCTGgtcagtttctgagtttgaaaccacaattacgtgtcaccatgccacaatgt Alignment from Spaln_nt2Genome GGAGTGGAGACGAGAAACTCGGGATGATGAGAGGCCTCACAGGAGAGATGAGGATCGGCTGAGGCGCTTGGGGGGTGACGATGAAGAGAGAGAGTCTTCTCTTAGACCGGATGATGATCGTATCCCCAGGCGTGGCCTGGATGATGACAGAGGGCCTAGACGTGGTCCCGATGAAGATAGATTTTCTCGTAGAGGAACAGATGATGACCGTCCTTCCTGGCGTAATGCAGATGATGATAGGCCTCCCAGGCGAATTGGTGATGATGACAGGGGAAGCTGGCGTCACACAGATGACGACAGACCACCCAGACGGGGACTGGATGATGAGAGAGGAAGCTGGCGTACAGCAGATGAGGACAGAGGACCTAGACGAGGGATGGATGATGACCGGGGGCCAAGACGAGGAGGTGCTGATGATGAACGGTCATCCTGGCGGAATGCTGATGATGATAGGGGTCCCAGGAGAGGCATGGATGATGATAGGGGTCCCAGGCGAGGGCTGGATGATGACCGAGGACCTTGGAGGAATGCTGCTGAAGATAGGATTTCCAGGAGAGGTGCAGATGATGACCGAGGGCCTTGGAGAAATATGGATGATGATAGGGTTCCTAGAAGGGGTGATGATGCAAGACCTGGTCCTTGGAGACCATTTG gcacatccctacatctgtttttggcacccccctcattactcccttctcagGGAATGGCAACAGGAGGCTCGAGATGATGACAGGCCTCATAGAAGTGATGAGGATCGATTACGACGCTTGGGAGGTGATGATGAGGAAAGTGAATCCTGTCTGAGGCCAGATGATGATCGCATCCCGAAACATGGTCTAGATGAT------GGGCCAAGATGTGGTCCTGATGAGGAGAGGTTCTCATGTAAAGGAACTGATGATGATCGTCCTTCCTGGCGTAATTCAGATGATGACAGG------------ATACGTGATGATGATAACGGAAGTTGGCATCACATGGATGATGACCGACCACCCAGATGGGGACTAGATGA------AAAAGGGTGG------GCAGATGGGGATAAAGGGCCCAGGCAAGGCATGGATGATGATCGAGGGCCTCGACATGGAGGTGCTGATGATGAACAGCTATCTTGGCGGAATGCTGATGATGACAGGGGACCCCAAAGGGGCATGGATGAAGATGATGAACC---TCATGGGCTCGATGATGACCAGAGTCCTTGGAGAAATGGTGC---AGATAGGATATCCAGGAGAGGATTGGATGATGATAGAGGTCCCTGGAGGAATATGGATGATGATCGGGTTCTTATAAGGGATGATGATGCAAGACCTGGGCCCATGAAGCC---TGgtcagtttctgagtttgaaaccacaattacgtgtcaccatgccacaatgt Alignment from Pairagon GGAGTGGAGACGAGAAACTCGGGATGATGAGAGGCCTCACAGGAGAGATGAGGATCGGCTGAGGCGCTTGGGGGGTGACGATGAAGAGAGAGAGTCTTCTCTTAGACCGGATGATGATCGTATCCCCAGGCGTGGCCTGGATGATGACAGAGGGCCTAGACGTGGTCCCGATGAAGATAGATTTTCTCGTAGAGGAACAGATGATGACCGTCCTTCCTGGCGTAATGCAGATGATGATAGGCCTCCCAGGCGAATTGGTGATGATGACAGGGGAAGCTGGCGTCACACAGATGACGACAGACCACCCAGACGGGGACTGGATGATGAGAGAGGAAGCTGGCGTACA---------GCAGATGAGGACAGAGGACCTAGACGAGGGATGGATGATGACCGGGGGCCAAGACGAGGAGGTGCTGATGATGAACGGTCATCCTGGCGGAATGCTGATGATGATAGGGGTCCCAGGAGAGGCATGGATGATGATAGGGGTCCCAGGCGA----------GGGCTGGATGATGACCGAGGACCTTGGAGGAATGCTGCTGAAGATAGGATTTCCAGGAGAGGTGCAGATGATGACCGAGGGCCTTGGAGAAATATGGATGATGATAGGGTTCCTAGAAGGGGTGATGATGCAAGACCTGGTCCTTGGAGACCATTTGTCAAGCCAG gcacatccctacatctgtttttggcacccccctcattactcccttctcagGGAATGGCAACAGGAGGCTCGAGATGATGACAGGCCTCATAGAAGTGATGAGGATCGATTACGACGCTTGGGAGGTGATGATGAGGAAAGTGAATCCTGTCTGAGGCCAGATGATGATCGCATCCCGAAACATGGTCTAGATGAT------GGGCCAAGATGTGGTCCTGATGAGGAGAGGTTCTCATGTAAAGGAACTGATGATGATCGTCCTTCCTGGCGTAATTCAGATGATGACAGG------------ATACGTGATGATGATAACGGAAGTTGGCATCACATGGATGATGACCGACCACCCAGATGGGGACTAGATGA---------------------AAAAGGGTGGGCAGATGGGGATAAAGGGCCCAGGCAAGGCATGGATGATGATCGAGGGCCTCGACATGGAGGTGCTGATGATGAACAGCTATCTTGGCGGAATGCTGATGATGACAGGGGACCCCAAAGGGGCATGGATGAAGAT-------------GATGAACCTCATGGGCTCGATGATGACCAGAGTCCTTGGAGAAATGGTGC---AGATAGGATATCCAGGAGAGGATTGGATGATGATAGAGGTCCCTGGAGGAATATGGATGATGATCGGGTTCTTATAAGGGATGATGATGCAAGACCTGGGCC------------CATGAAGCCTGgtcagtttctgagtttgaaaccacaattacgtgtcaccatgccacaatgt Alignment from Exonerate_protein2genome GGAGTGGAGACGAGAAACTCGGGATGATGAGAGGCCTCACAGGAGAGATGAGGATCGGCTGAGGCGCTTGGGGGGTGACGATGAAGAGAGAGAGTCTTCTCTTAGACCGGATGATGATCGTATCCCCAGGCGTGGCCTGGATGATGACAGAGGGCCTAGACGTGGTCCCGATGAAGATAGATTTTCTCGTAGAGGAACAGATGATGACCGTCCTTCCTGGCGTAATGCAGATGATGATAGGCCTCCCAGGCGAATTGGTGATGATGACAGGGGAAGCTGGCGTCACACAGATGACGACAGACCACCCAGACGGGGACTGGATGATGAGAGAGGAAGCTGGCGTACAGCAGATGAGGACAGAGGACCTAGACGAGGGATGGATGATGACCGGGGGCCAAGACGAGGAGGTGCTGATGATGAACGGTCATCCTGGCGGAATGCTGATGATGATAGGGGTCCCAGGAGAGGCATGGATGATGATAGGGGTCCCAGGCGAGGGCTGGATGATGACCGAGGACCTTGGAGGAATGCTGCTGAAGATAGGATTTCCAGGAGAGGTGCAGATGATGACCGAGGGCCTTGGAGAAATATGGATGATGATAGGGTTCCTAGAAGGGGTGATGATGCAAGACCTGGTCCTTGGAGACCAT gcacatccctacatctgtttttggcacccccctcattactcccttctcagGGAATGGCAACAGGAGGCTCGAGATGATGACAGGCCTCATAGAAGTGATGAGGATCGATTACGACGCTTGGGAGGTGATGATGAGGAAAGTGAATCCTGTCTGAGGCCAGATGATGATCGCATCCCGAAACATGGTCTAGATGAT------GGGCCAAGATGTGGTCCTGATGAGGAGAGGTTCTCATGTAAAGGAACTGATGATGATCGTCCTTCCTGGCGTAATTCAGATGATGAC------------AGGATACGTGATGATGATAACGGAAGTTGGCATCACATGGATGATGACCGACCACCCAGATGGGGACTAGATGAAAAA------GGGTGG------GCAGATGGGGATAAAGGGCCCAGGCAAGGCATGGATGATGATCGAGGGCCTCGACATGGAGGTGCTGATGATGAACAGCTATCTTGGCGGAATGCTGATGATGACAGGGGACCCCAAAGGGGCATGGATGAAGATGATGAACCT---CATGGGCTCGATGATGACCAGAGTCCTTGGAGAAATGGTGCA---GATAGGATATCCAGGAGAGGATTGGATGATGATAGAGGTCCCTGGAGGAATATGGATGATGATCGGGTTCTTATAAGGGATGATGATGCAAGACCTGGGCCCATGAAGCCTGgtcagtttctgagtttgaaaccacaattacgtgtcaccatgccacaatgt Alignment from Exonerate_coding2genome GGAGTGGAGACGAGAAACTCGGGATGATGAGAGGCCTCACAGGAGAGATGAGGATCGGCTGAGGCGCTTGGGGGGTGACGATGAAGAGAGAGAGTCTTCTCTTAGACCGGATGATGATCGTATCCCCAGGCGTGGCCTGGATGATGACAGAGGGCCTAGACGTGGTCCCGATGAAGATAGATTTTCTCGTAGAGGAACAGATGATGACCGTCCTTCCTGGCGTAATGCAGATGATGATAGGCCTCCCAGGCGAATTGGTGATGATGACAGGGGAAGCTGGCGTCACACAGATGACGACAGACCACCCAGACGGGGACTGGATGATGAGAGAGGAAGCTGGCGTACAGCAGATGAGGACAGAGGACCTAGACGAGGGATGGATGATGACCGGGGGCCAAGACGAGGAGGTGCTGATGATGAACGGTCATCCTGGCGGAATGCTGATGATGATAGGGGTCCCAGGAGAGGCATGGATGATGATAGGGGTCCCAGGCGAGGGCTGGATGATGACCGAGGACCTTGGAGGAATGCTGCTGAAGATAGGATTTCCAGGAGAGGTGCAGATGATGACCGAGGGCCTTGGAGAAATATGGATGATGATAGGGTTCCTAGAAGGGGTGATGATGCAAGACCTGGTCCTTGGAGACCAT gcacatccctacatctgtttttggcacccccctcattactcccttctcagGGAATGGCAACAGGAGGCTCGAGATGATGACAGGCCTCATAGAAGTGATGAGGATCGATTACGACGCTTGGGAGGTGATGATGAGGAAAGTGAATCCTGTCTGAGGCCAGATGATGATCGCATCCCGAAACATGGTCTAGATGAT------GGGCCAAGATGTGGTCCTGATGAGGAGAGGTTCTCATGTAAAGGAACTGATGATGATCGTCCTTCCTGGCGTAATTCAGATGATGAC------------AGGATACGTGATGATGATAACGGAAGTTGGCATCACATGGATGATGACCGACCACCCAGATGGGGACTAGATGAAAAA------GGGTGG------GCAGATGGGGATAAAGGGCCCAGGCAAGGCATGGATGATGATCGAGGGCCTCGACATGGAGGTGCTGATGATGAACAGCTATCTTGGCGGAATGCTGATGATGACAGGGGACCCCAAAGGGGCATGGATGAAGATGATGAACCT---CATGGGCTCGATGATGACCAGAGTCCTTGGAGAAATGGTGCA---GATAGGATATCCAGGAGAGGATTGGATGATGATAGAGGTCCCTGGAGGAATATGGATGATGATCGGGTTCTTATAAGGGATGATGATGCAAGACCTGGGCCCATGAAGCCTGgtcagtttctgagtttgaaaccacaattacgtgtcaccatgccacaatgt Alignment from GeneWise GGAGTGGAGACGAGAAACTCGGGATGATGAGAGGCCTCACAGGAGAGATGAGGATCGGCTGAGGCGCTTGGGGGGTGACGATGAAGAGAGAGAGTCTTCTCTTAGACCGGATGATGATCGTATCCCCAGGCGTGGCCTGGATGATGACAGAGGGCCTAGACGTGGTCCCGATGAAGATAGATTTTCTCGTAGAGGAACAGATGATGACCGTCCTTCCTGGCGTAATGCAGATGATGATAGGCCTCCCAGGCGAATTGGTGATGATGACAGGGGAAGCTGGCGTCACACAGATGACGACAGACCACCCAGACGGGGACTGGATGATGAGAGAGGAAGCTGGCGTACAGCAGATGAGGACAGAGGACCTAGACGAGGGATGGATGATGACCGGGGGCCAAGACGAGGAGGTGCTGATGATGAACGGTCATCCTGGCGGAATGCTGATGATGATAGGGGTCCCAGGAGAGGCATGGATGATGATAGGGGTCCCAGGCGAGGGCTGGATGATGACCGAGGACCTTGGAGGAATGCTGCTGAAGATAGGATTTCCAGGAGAGGTGCAGATGATGACCGAGGGCCTTGGAGAAATATGGATGATGATAGGGTTCCTAGAAGGGGTGATGATGCAAGACCTGGTCCTTGGAGACCATTTGTCAAGCCAG gcacatccctacatctgtttttggcacccccctcattactcccttctcagGGAATGGCAACAGGAGGCTCGAGATGATGACAGGCCTCATAGAAGTGATGAGGATCGATTACGACGCTTGGGAGGTGATGATGAGGAAAGTGAATCCTGTCTGAGGCCAGATGATGATCGCATCCCGAAACATGGTCTAGATGAT------GGGCCAAGATGTGGTCCTGATGAGGAGAGGTTCTCATGTAAAGGAACTGATGATGATCGTCCTTCCTGGCGTAATTCAGATGATGACAGG------------ATACGTGATGATGATAACGGAAGTTGGCATCACATGGATGATGACCGACCACCCAGATGGGGACTAGAT---GAAAAAGGG---TGG------GCAGATGGGGATAAAGGGCCCAGGCAAGGCATGGATGATGATCGAGGGCCTCGACATGGAGGTGCTGATGATGAACAGCTATCTTGGCGGAATGCTGATGATGACAGGGGACCCCAAAGGGGCATGGATGAAGATGATGAACCT---CATGGGCTCGATGATGACCAGAGTCCTTGGAGAAATGGTGCA---GATAGGATATCCAGGAGAGGATTGGATGATGATAGAGGTCCCTGGAGGAATATGGATGATGATCGGGTTCTTATAAGGGATGATGATGCAAGACCTGGGCCCATGAAGCCTGGTCAGTTTCTGAgtttgaaaccacaattacgtgtcaccatgccacaatgt #### Eif3a_ID13312_18 --> 0 - 2 Original Alignment GACTCTCGGTGGGGAGATAGAGATTCAGAAGGCACCTGGAGGAAAGGACCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAAaa tgttgaacctacaaagattaccatttttccatcacacagttcccttctagGACTCCCGTTGGGGTGATAGAGATTCAGAGGGCACCTGGAGTAAAGGGCCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAGaagtgagtcaattgtcttgcaaataaaaacacacaacagatacttctatatt Alignment from CESAR GACTCTCGGTGGGGAGATAGAGATTCAGAAGGCACCTGGAGGAAAGGACCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAAaa tgttgaacctacaaagattaccatttttccatcacacagttcccttctagGACTCCCGTTGGGGTGATAGAGATTCAGAGGGCACCTGGAGTAAAGGGCCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAGaagtgagtcaattgtcttgcaaataaaaacacacaacagatacttctatatt Alignment from Spaln_aa2Genome GACTCTCGGTGGGGAGATAGAGATTCAGAAGGCACCTGGAGGAAAGGACCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAAAA tgttgaacctacaaagattaccatttttccatcacacagttcccttctagGACTCCCGTTGGGGTGATAGAGATTCAGAGGGCACCTGGAGTAAAGGGCCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAGAAgtgagtcaattgtcttgcaaataaaaacacacaacagatacttctatatt Alignment from Spaln_nt2Genome GACTCTCGGTGGGGAGATAGAGATTCAGAAGGCACCTGGAGGAAAGGACCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAAAA tgttgaacctacaaagattaccatttttccatcacacagttcccttctagGACTCCCGTTGGGGTGATAGAGATTCAGAGGGCACCTGGAGTAAAGGGCCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAGAAgtgagtcaattgtcttgcaaataaaaacacacaacagatacttctatatt Alignment from Pairagon GACTCTCGGTGGGGAGATAGAGATTCAGAAGGCACCTGGAGGAAAGGACCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAAAA tgttgaacctacaaagattaccatttttccatcacacagttcccttctagGACTCCCGTTGGGGTGATAGAGATTCAGAGGGCACCTGGAGTAAAGGGCCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAGAAgtgagtcaattgtcttgcaaataaaaacacacaacagatacttctatatt Alignment from Exonerate_protein2genome GACTCTCGGTGGGGAGATAGAGATTCAGAAGGCACCTGGAGGAAAGGACCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAAAA tgttgaacctacaaagattaccatttttccatcacacagttcccttctagGACTCCCGTTGGGGTGATAGAGATTCAGAGGGCACCTGGAGTAAAGGGCCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAGAAgtgagtcaattgtcttgcaaataaaaacacacaacagatacttctatatt Alignment from Exonerate_coding2genome GACTCTCGGTGGGGAGATAGAGATTCAGAAGGCACCTGGAGGAAAGGACCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAAAA tgttgaacctacaaagattaccatttttccatcacacagttcccttctagGACTCCCGTTGGGGTGATAGAGATTCAGAGGGCACCTGGAGTAAAGGGCCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAGAAgtgagtcaattgtcttgcaaataaaaacacacaacagatacttctatatt Alignment from GeneWise GACTCTCGGTGGGGAGATAGAGATTCAGAAGGCACCTGGAGGAAAGGACCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAAAA tgttgaacctacaaagattaccatttttccatcacacagttcccttctagGACTCCCGTTGGGGTGATAGAGATTCAGAGGGCACCTGGAGTAAAGGGCCAGAAGCTGACTCTGAGTGGAGAAGAGGCCCACCAGAGAAgtgagtcaattgtcttgcaaataaaaacacacaacagatacttctatatt #### Eif3a_ID13314_16 --> 0 - 1 Original Alignment GAAAAACTGAAACAGTTTGAAGAGCGCTTAGCA---GAAGAAAGGCATAGTCGCCTAGAAGATCGGAAAAGGCAGCGGAAAGAAGAACGCAAAATAACTTATTACAGAGAAAAGGAAGAAGAAGAGCAGAGGAGGGCAGAGGAGCAGATGCTCAAAg ccaatttgtattttccttcatgtcttacttctctcttgtttctttcgcagGAAAAACTGAAACCATTTGCAGAGCGTCTGGGAGGGAAAGAACGGCACAGCCGCTTTGAAGATCAGGAAAGAAGGCGGAAAGAAGAACGCAAGATAACCTATTATAGAGAGAAAGGAGAAGAAGAGCAGAGAAGAGCAGAGGAGCAGATGCTCAAGggtgagagtagtctgtagtatttataagagtatacagcgtgggtagtggtt Alignment from CESAR GAAAAACTGAAACAGTTTGAAGAGCGCTTAGCA---GAAGAAAGGCATAGTCGCCTAGAAGATCGGAAAAGGCAGCGGAAAGAAGAACGCAAAATAACTTATTACAGAGAAAAGGAAGAAGAAGAGCAGAGGAGGGCAGAGGAGCAGATGCTCAAAg ccaatttgtattttccttcatgtcttacttctctcttgtttctttcgcagGAAAAACTGAAACCATTTGCAGAGCGTCTGGGAGGGAAAGAACGGCACAGCCGCTTTGAAGATCAGGAAAGAAGGCGGAAAGAAGAACGCAAGATAACCTATTATAGAGAGAAAGGAGAAGAAGAGCAGAGAAGAGCAGAGGAGCAGATGCTCAAGggtgagagtagtctgtagtatttataagagtatacagcgtgggtagtggtt Alignment from Spaln_aa2Genome GAAAAACTGAAACAGTTTGAAGAGCGCTTA---GCAGAAGAAAGGCATAGTCGCCTAGAAGATCGGAAAAGGCAGCGGAAAGAAGAACGCAAAATAACTTATTACAGAGAAAAGGAAGAAGAAGAGCAGAGGAGGGCAGAGGAGCAGATGCTCAAAG ccaatttgtattttccttcatgtcttacttctctcttgtttctttcgcagGAAAAACTGAAACCATTTGCAGAGCGTCTGGGAGGGAAAGAACGGCACAGCCGCTTTGAAGATCAGGAAAGAAGGCGGAAAGAAGAACGCAAGATAACCTATTATAGAGAGAAAGGAGAAGAAGAGCAGAGAAGAGCAGAGGAGCAGATGCTCAAGGgtgagagtagtctgtagtatttataagagtatacagcgtgggtagtggtt Alignment from Spaln_nt2Genome GAAAAACTGAAACAGTTTGAAGAGCGCTTAGCAG---AAGAAAGGCATAGTCGCCTAGAAGATCGGAAAAGGCAGCGGAAAGAAGAACGCAAAATAACTTATTACAGAGAAAAGGAAGAAGAAGAGCAGAGGAGGGCAGAGGAGCAGATGCTCAAAG ccaatttgtattttccttcatgtcttacttctctcttgtttctttcgcagGAAAAACTGAAACCATTTGCAGAGCGTCTGGGAGGGAAAGAACGGCACAGCCGCTTTGAAGATCAGGAAAGAAGGCGGAAAGAAGAACGCAAGATAACCTATTATAGAGAGAAAGGAGAAGAAGAGCAGAGAAGAGCAGAGGAGCAGATGCTCAAGGgtgagagtagtctgtagtatttataagagtatacagcgtgggtagtggtt Alignment from Pairagon GAAAAACTGAAACAGTTTGAAGAGCGCTTAGCAG---AAGAAAGGCATAGTCGCCTAGAAGATCGGAAAAGGCAGCGGAAAGAAGAACGCAAAATAACTTATTACAGAGAAAAGGAAGAAGAAGAGCAGAGGAGGGCAGAGGAGCAGATGCTCAAAG ccaatttgtattttccttcatgtcttacttctctcttgtttctttcgcagGAAAAACTGAAACCATTTGCAGAGCGTCTGGGAGGGAAAGAACGGCACAGCCGCTTTGAAGATCAGGAAAGAAGGCGGAAAGAAGAACGCAAGATAACCTATTATAGAGAGAAAGGAGAAGAAGAGCAGAGAAGAGCAGAGGAGCAGATGCTCAAGGgtgagagtagtctgtagtatttataagagtatacagcgtgggtagtggtt Alignment from Exonerate_protein2genome GAAAAACTGAAACAGTTTGAAGAGCGCTTA---GCAGAAGAAAGGCATAGTCGCCTAGAAGATCGGAAAAGGCAGCGGAAAGAAGAACGCAAAATAACTTATTACAGAGAAAAGGAAGAAGAAGAGCAGAGGAGGGCAGAGGAGCAGATGCTCAAAG ccaatttgtattttccttcatgtcttacttctctcttgtttctttcgcagGAAAAACTGAAACCATTTGCAGAGCGTCTGGGAGGGAAAGAACGGCACAGCCGCTTTGAAGATCAGGAAAGAAGGCGGAAAGAAGAACGCAAGATAACCTATTATAGAGAGAAAGGAGAAGAAGAGCAGAGAAGAGCAGAGGAGCAGATGCTCAAGGgtgagagtagtctgtagtatttataagagtatacagcgtgggtagtggtt Alignment from Exonerate_coding2genome GAAAAACTGAAACAGTTTGAAGAGCGCTTA---GCAGAAGAAAGGCATAGTCGCCTAGAAGATCGGAAAAGGCAGCGGAAAGAAGAACGCAAAATAACTTATTACAGAGAAAAGGAAGAAGAAGAGCAGAGGAGGGCAGAGGAGCAGATGCTCAAAG ccaatttgtattttccttcatgtcttacttctctcttgtttctttcgcagGAAAAACTGAAACCATTTGCAGAGCGTCTGGGAGGGAAAGAACGGCACAGCCGCTTTGAAGATCAGGAAAGAAGGCGGAAAGAAGAACGCAAGATAACCTATTATAGAGAGAAAGGAGAAGAAGAGCAGAGAAGAGCAGAGGAGCAGATGCTCAAGGgtgagagtagtctgtagtatttataagagtatacagcgtgggtagtggtt Alignment from GeneWise GAAAAACTGAAACAGTTTGAAGAGCGCTTAGCA---GAAGAAAGGCATAGTCGCCTAGAAGATCGGAAAAGGCAGCGGAAAGAAGAACGCAAAATAACTTATTACAGAGAAAAGGAAGAAGAAGAGCAGAGGAGGGCAGAGGAGCAGATGCTCAAAG ccaatttgtattttccttcatgtcttacttctctcttgtttctttcgcagGAAAAACTGAAACCATTTGCAGAGCGTCTGGGAGGGAAAGAACGGCACAGCCGCTTTGAAGATCAGGAAAGAAGGCGGAAAGAAGAACGCAAGATAACCTATTATAGAGAGAAAGGAGAAGAAGAGCAGAGAAGAGCAGAGGAGCAGATGCTCAAGGgtgagagtagtctgtagtatttataagagtatacagcgtgggtagtggtt #### Eif3a_ID13315_15 --> 0 - 0 Original Alignment ATCACTACAATGCAGCTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGTTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTACGAG actaaatgaatgaaaagaatgaaacagatggcatttttctgtatttatagATTACTACAATGCAACTAGAACGTGAAAAAGCATTGGAGCATAAAAATAGGATGTCAAGAATGCTGGAGGACAGAGATTTATTTGTCATGCGCCTCAAAGCCGCCCGGCAGTCTGTTTGTGAGgtgagtatgtctagcattgtgcattatgcaaaagttataatctacttcta Alignment from CESAR ATCACTACAATGCAGCTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGTTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTACGAG actaaatgaatgaaaagaatgaaacagatggcatttttctgtatttatagATTACTACAATGCAACTAGAACGTGAAAAAGCATTGGAGCATAAAAATAGGATGTCAAGAATGCTGGAGGACAGAGATTTATTTGTCATGCGCCTCAAAGCCGCCCGGCAGTCTGTTTGTGAGgtgagtatgtctagcattgtgcattatgcaaaagttataatctacttcta Alignment from Spaln_aa2Genome ATCACTACAATGCAGCTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGTTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTACGAG actaaatgaatgaaaagaatgaaacagatggcatttttctgtatttatagATTACTACAATGCAACTAGAACGTGAAAAAGCATTGGAGCATAAAAATAGGATGTCAAGAATGCTGGAGGACAGAGATTTATTTGTCATGCGCCTCAAAGCCGCCCGGCAGTCTGTTTGTGAGgtgagtatgtctagcattgtgcattatgcaaaagttataatctacttcta Alignment from Spaln_nt2Genome ATCACTACAATGCAGCTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGTTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTACGAG actaaatgaatgaaaagaatgaaacagatggcatttttctgtatttatagATTACTACAATGCAACTAGAACGTGAAAAAGCATTGGAGCATAAAAATAGGATGTCAAGAATGCTGGAGGACAGAGATTTATTTGTCATGCGCCTCAAAGCCGCCCGGCAGTCTGTTTGTGAGgtgagtatgtctagcattgtgcattatgcaaaagttataatctacttcta Alignment from Pairagon ATCACTACAATGCAGCTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGTTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTACGAG actaaatgaatgaaaagaatgaaacagatggcatttttctgtatttatagATTACTACAATGCAACTAGAACGTGAAAAAGCATTGGAGCATAAAAATAGGATGTCAAGAATGCTGGAGGACAGAGATTTATTTGTCATGCGCCTCAAAGCCGCCCGGCAGTCTGTTTGTGAGgtgagtatgtctagcattgtgcattatgcaaaagttataatctacttcta Alignment from Exonerate_protein2genome ATCACTACAATGCAGCTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGTTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTACGAG actaaatgaatgaaaagaatgaaacagatggcatttttctgtatttatagATTACTACAATGCAACTAGAACGTGAAAAAGCATTGGAGCATAAAAATAGGATGTCAAGAATGCTGGAGGACAGAGATTTATTTGTCATGCGCCTCAAAGCCGCCCGGCAGTCTGTTTGTGAGgtgagtatgtctagcattgtgcattatgcaaaagttataatctacttcta Alignment from Exonerate_coding2genome ATCACTACAATGCAGCTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGTTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTACGAG actaaatgaatgaaaagaatgaaacagatggcatttttctgtatttatagATTACTACAATGCAACTAGAACGTGAAAAAGCATTGGAGCATAAAAATAGGATGTCAAGAATGCTGGAGGACAGAGATTTATTTGTCATGCGCCTCAAAGCCGCCCGGCAGTCTGTTTGTGAGgtgagtatgtctagcattgtgcattatgcaaaagttataatctacttcta Alignment from GeneWise ATCACTACAATGCAGCTAGAACGAGAAAAAGCTCTGGAGCATAAGAATAGGATGTCACGAATGTTGGAAGACAGAGATCTATTTGTGATGCGCCTCAAAGCTGCCCGGCAGTCTGTCTACGAG actaaatgaatgaaaagaatgaaacagatggcatttttctgtatttatagATTACTACAATGCAACTAGAACGTGAAAAAGCATTGGAGCATAAAAATAGGATGTCAAGAATGCTGGAGGACAGAGATTTATTTGTCATGCGCCTCAAAGCCGCCCGGCAGTCTGTTTGTGAGgtgagtatgtctagcattgtgcattatgcaaaagttataatctacttcta #### Eif3a_ID13318_12 --> 0 - 0 Original Alignment CAAGAGAAAGAAGAACAGCATCAATTGGCAGTTAATGCATATCTTAAAAATTCAAGAAAAGAGCACCAGAGGATCCTGGCTCGGAGACAGACAATTGAGGAAAGAAAAGAGCGTCTTGAGAGTCTGAATATTCAACGTGAGAAGGAAGAACTCGAGCAGAGGGAAGCTGAACTCCAGAAAGTACGAAAGGCTGAAGAAGAAAGGCTGCGCCAAGAGGCAAAGGAGCGAGAGAAGGAACGAATCCTTCAAGAACACGAGCAAATCAAGAAGAAAACTGTTCGGGAGCGGTTAGAGCAGATCAAGAAGACAGAGCTGGGCGCCAAAGCATTTAAAGATATTGACATTGAA aaggatggaggaagatctaccgatttagaattgatggtttgttctagcagAAAGACAGAGAAGACCAGCATCAATTGACTATA---------ATCAAAAATTCAAGAAAAGAGGACCAGAGGATTCTAACGCAGAGACAGACAATCGATGAGAGAAAAGAGCGC------------AATGTCCGACATGAGCAAGCAAAACTTGACCAGAGAGAACTTGAACTTCAAAAGGTGCGGCGACCTGAGGAAGAAAGGCTCTACCATGAGGCAAAGGAAAGAGAGAAAGAGCGAATCTTCCAAGATCACAAGCAACTCAAAAAGAAAACTGTG------CGGTTGGAGCAAATCAAGAACACAGAATTA---------------GAAGATATTGACATTGAAgtttggtagtctctttagtttctttatgtctggaattcgtaccaatccta Alignment from CESAR CAAGAGAAAGAAGAACAGCATCAATTGGCAGTTAATGCATATCTTAAAAATTCAAGAAAAGAGCACCAGAGGATCCTGGCTCGGAGACAGACAATTGAGGAAAGAAAAGAGCGTCTTGAGAGTCTGAATATTCAACGTGAGAAGGAAGAACTCGAGCAGAGGGAAGCTGAACTCCAGAAAGTACGAAAGGCTGAAGAAGAAAGGCTGCGCCAAGAGGCAAAGGAGCGAGAGAAGGAACGAATCCTTCAAGAACACGAGCAAATCAAGAAGAAAACTGTTCGGGAGCGGTTAGAGCAGATCAAGAAGACAGAGCTGGGCGCCAAAGCATTTAAAGATATTGACATTGAA aaggatggaggaagatctaccgatttagaattgatggtttgttctagcagAAAGACAGAGAAGACCAGCATCAATTGACTATA---------ATCAAAAATTCAAGAAAAGAGGACCAGAGGATTCTAACGCAGAGACAGACAATCGATGAGAGAAAAGAGCGC------------AATGTCCGACATGAGCAAGCAAAACTTGACCAGAGAGAACTTGAACTTCAAAAGGTGCGGCGACCTGAGGAAGAAAGGCTCTACCATGAGGCAAAGGAAAGAGAGAAAGAGCGAATCTTCCAAGATCACAAGCAACTCAAAAAGAAAACTGTG------CGGTTGGAGCAAATCAAGAACACAGAATTA---------------GAAGATATTGACATTGAAgtttggtagtctctttagtttctttatgtctggaattcgtaccaatccta Alignment from Spaln_aa2Genome CAAGAGAAAGAAGAACAGCATCAATTGGCAGTTAATGCATATCTTAAAAATTCAAGAAAAGAGCACCAGAGGATCCTGGCTCGGAGACAGACAATTGAGGAAAGAAAAGAGCGTCTTGAGAGTCTGAATATTCAACGTGAGAAGGAAGAACTCGAGCAGAGGGAAGCTGAACTCCAGAAAGTACGAAAGGCTGAAGAAGAAAGGCTGCGCCAAGAGGCAAAGGAGCGAGAGAAGGAACGAATCCTTCAAGAACACGAGCAAATCAAGAAGAAAACTGTTCGGGAGCGGTTAGAGCAGATCAAGAAGACAGAGCTGGGCGCCAAAGCATTTAAAGATATTGACATTGAA aaggatggaggaagatctaccgatttagaattgatggtttgttctagcagAAAGACAGAGAAGACCAGCATCAATTGACTATA---------ATCAAAAATTCAAGAAAAGAGGACCAGAGGATTCTAACGCAGAGACAGACAATCGATGAGAGAAAAGAGCGC------------AATGTCCGACATGAGCAAGCAAAACTTGACCAGAGAGAACTTGAACTTCAAAAGGTGCGGCGACCTGAGGAAGAAAGGCTCTACCATGAGGCAAAGGAAAGAGAGAAAGAGCGAATCTTCCAAGATCACAAGCAACTCAAAAAGAAAACTGTG------CGGTTGGAGCAAATCAAGAACACAGAATTA---------------GAAGATATTGACATTGAAgtttggtagtctctttagtttctttatgtctggaattcgtaccaatccta Alignment from Spaln_nt2Genome CAAGAGAAAGAAGAACAGCATCAATTGGCAGTTAATGCATATCTTAAAAATTCAAGAAAAGAGCACCAGAGGATCCTGGCTCGGAGACAGACAATTGAGGAAAGAAAAGAGCGTCTTGAGAGTCTGAATATTCAACGTGAGAAGGAAGAACTCGAGCAGAGGGAAGCTGAACTCCAGAAAGTACGAAAGGCTGAAGAAGAAAGGCTGCGCCAAGAGGCAAAGGAGCGAGAGAAGGAACGAATCCTTCAAGAACACGAGCAAATCAAGAAGAAAACTGTTCGGGAGCGGTTAGAGCAGATCAAGAAGACAGAGCTGGGCGCCAAAGCATTTAAAGATATTGACATTGAA aaggatggaggaagatctaccgatttagaattgatggtttgttctagcagAAAGACAGAGAAGACCAGCATCAATTGACTATAA---------TCAAAAATTCAAGAAAAGAGGACCAGAGGATTCTAACGCAGAGACAGACAATCGATGAGAGAAAAGAGCG------------CAATGTCCGACATGAGCAAGCAAAACTTGACCAGAGAGAACTTGAACTTCAAAAGGTGCGGCGACCTGAGGAAGAAAGGCTCTACCATGAGGCAAAGGAAAGAGAGAAAGAGCGAATCTTCCAAGATCACAAGCAACTCAAAAAGAAAACTGT------GCGGTTGGAGCAAATCAAGAACACAGA---------------ATTAGAAGATATTGACATTGAAgtttggtagtctctttagtttctttatgtctggaattcgtaccaatccta Alignment from Pairagon CAAGAGAAAGAAGAACAGCATCAATTGGCAGTTAATGCATATCTTAAAAATTCAAGAAAAGAGCACCAGAGGATCCTGGCTCGGAGACAGACAATTGAGGAAAGAAAAGAGCGTCTTGAGAGTCTGAATATTCAACGTGAGAAGGAAGAACTCGAGCAGAGGGAAGCTGAACTCCAGAAAGTACGAAAGGCTGAAGAAGAAAGGCTGCGCCAAGAGGCAAAGGAGCGAGAGAAGGAACGAATCCTTCAAGAACACGAGCAAATCAAGAAGAAAACTGTTCGGGAGCGGTTAGAGCAGATCAAGAAGACAGAGCTGGGCGCCAAAGCATTTAAAGATATTGACATTGAA aaggatggaggaagatctaccgatttagaattgatggtttgttctagcagAAAGACAGAGAAGACCAGCATCAATTGACTATAA---------TCAAAAATTCAAGAAAAGAGGACCAGAGGATTCTAACGCAGAGACAGACAATCGATGAGAGAAAAGAGCGC------------AATGTCCGACATGAGCAAGCAAAACTTGACCAGAGAGAACTTGAACTTCAAAAGGTGCGGCGACCTGAGGAAGAAAGGCTCTACCATGAGGCAAAGGAAAGAGAGAAAGAGCGAATCTTCCAAGATCACAAGCAACTCAAAAAGAAAACTGT------GCGGTTGGAGCAAATCAAGAACACAGA---------------ATTAGAAGATATTGACATTGAAgtttggtagtctctttagtttctttatgtctggaattcgtaccaatccta Alignment from Exonerate_protein2genome CAAGAGAAAGAAGAACAGCATCAATTGGCAGTTAATGCATATCTTAAAAATTCAAGAAAAGAGCACCAGAGGATCCTGGCTCGGAGACAGACAATTGAGGAAAGAAAAGAGCGTCTTGAGAGTCTGAATATTCAACGTGAGAAGGAAGAACTCGAGCAGAGGGAAGCTGAACTCCAGAAAGTACGAAAGGCTGAAGAAGAAAGGCTGCGCCAAGAGGCAAAGGAGCGAGAGAAGGAACGAATCCTTCAAGAACACGAGCAAATCAAGAAGAAAACTGTTCGGGAGCGGTTAGAGCAGATCAAGAAGACAGAGCTG aaggatggaggaagatctaccgatttagaattgatggtttgttctagcagAAAGACAGAGAAGACCAGCATCAATTGACTATA---------ATCAAAAATTCAAGAAAAGAGGACCAGAGGATTCTAACGCAGAGACAGACAATCGATGAGAGAAAAGAGCGC------------AATGTCCGACATGAGCAAGCAAAACTTGACCAGAGAGAACTTGAACTTCAAAAGGTGCGGCGACCTGAGGAAGAAAGGCTCTACCATGAGGCAAAGGAAAGAGAGAAAGAGCGAATCTTCCAAGATCACAAGCAACTCAAAAAGAAAACTGTG------CGGTTGGAGCAAATCAAGAACACAGAATTAgaagatattgacattgaagtttggtagtctctttagtttctttatgtctggaattcgtaccaatccta Alignment from Exonerate_coding2genome CAAGAGAAAGAAGAACAGCATCAATTGGCAGTTAATGCATATCTTAAAAATTCAAGAAAAGAGCACCAGAGGATCCTGGCTCGGAGACAGACAATTGAGGAAAGAAAAGAGCGTCTTGAGAGTCTGAATATTCAACGTGAGAAGGAAGAACTCGAGCAGAGGGAAGCTGAACTCCAGAAAGTACGAAAGGCTGAAGAAGAAAGGCTGCGCCAAGAGGCAAAGGAGCGAGAGAAGGAACGAATCCTTCAAGAACACGAGCAAATCAAGAAGAAAACTGTTCGGGAGCGGTTAGAGCAGATCAAGAAGACAGAGCTG aaggatggaggaagatctaccgatttagaattgatggtttgttctagcagAAAGACAGAGAAGACCAGCATCAATTGACTATA---------ATCAAAAATTCAAGAAAAGAGGACCAGAGGATTCTAACGCAGAGACAGACAATCGATGAGAGAAAAGAGCGC------------AATGTCCGACATGAGCAAGCAAAACTTGACCAGAGAGAACTTGAACTTCAAAAGGTGCGGCGACCTGAGGAAGAAAGGCTCTACCATGAGGCAAAGGAAAGAGAGAAAGAGCGAATCTTCCAAGATCACAAGCAACTCAAAAAGAAAACTGTG------CGGTTGGAGCAAATCAAGAACACAGAATTAgaagatattgacattgaagtttggtagtctctttagtttctttatgtctggaattcgtaccaatccta Alignment from GeneWise CAAGAGAAAGAAGAACAGCATCAATTGGCAGTTAATGCATATCTTAAAAATTCAAGAAAAGAGCACCAGAGGATCCTGGCTCGGAGACAGACAATTGAGGAAAGAAAAGAGCGTCTTGAGAGTCTGAATATTCAACGTGAGAAGGAAGAACTCGAGCAGAGGGAAGCTGAACTCCAGAAAGTACGAAAGGCTGAAGAAGAAAGGCTGCGCCAAGAGGCAAAGGAGCGAGAGAAGGAACGAATCCTTCAAGAACACGAGCAAATCAAGAAGAAAACTGTTCGGGAGCGGTTAGAGCAGATCAAGAAGACAGAGCTGGGCGCCAAAGCATTTAAAGATATTGACATTGAA aaggatggaggaagatctaccgatttagaattgatggtttgttctagcagAAAGACAGAGAAGACCAGCATCAATTGACTATA---------ATCAAAAATTCAAGAAAAGAGGACCAGAGGATTCTAACGCAGAGACAGACAATCGATGAGAGAAAAGAGCGC------------AATGTCCGACATGAGCAAGCAAAACTTGACCAGAGAGAACTTGAACTTCAAAAGGTGCGGCGACCTGAGGAAGAAAGGCTCTACCATGAGGCAAAGGAAAGAGAGAAAGAGCGAATCTTCCAAGATCACAAGCAACTCAAAAAGAAAACTGTGCGG------TTGGAGCAAATCAAGAACACAGAATTA---------------GAAGATATTGACATTGAAgtttggtagtctctttagtttctttatgtctggaattcgtaccaatccta #### Eif3a_ID13320_10 --> 0 - 0 Original Alignment GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG tctctactaatgcttttgtgctaaaaccatctgtccctgtccttctccagGTGGCACAGATTTATCAGAGCATTGAGTTTTCCCGTTTAACTTCTTTAGTGCCTTTTGTTGATGCTTTTCAACTGGAGCGGGCAATAGTAGATGCCGCCCGGCACTGTGACCTGCAGgtaaaatttacaaatatggtttgcattgtatggtctgaaaaatttgagta Alignment from CESAR GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG tctctactaatgcttttgtgctaaaaccatctgtccctgtccttctccagGTGGCACAGATTTATCAGAGCATTGAGTTTTCCCGTTTAACTTCTTTAGTGCCTTTTGTTGATGCTTTTCAACTGGAGCGGGCAATAGTAGATGCCGCCCGGCACTGTGACCTGCAGgtaaaatttacaaatatggtttgcattgtatggtctgaaaaatttgagta Alignment from Spaln_aa2Genome GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG tctctactaatgcttttgtgctaaaaccatctgtccctgtccttctccagGTGGCACAGATTTATCAGAGCATTGAGTTTTCCCGTTTAACTTCTTTAGTGCCTTTTGTTGATGCTTTTCAACTGGAGCGGGCAATAGTAGATGCCGCCCGGCACTGTGACCTGCAGgtaaaatttacaaatatggtttgcattgtatggtctgaaaaatttgagta Alignment from Spaln_nt2Genome GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG tctctactaatgcttttgtgctaaaaccatctgtccctgtccttctccagGTGGCACAGATTTATCAGAGCATTGAGTTTTCCCGTTTAACTTCTTTAGTGCCTTTTGTTGATGCTTTTCAACTGGAGCGGGCAATAGTAGATGCCGCCCGGCACTGTGACCTGCAGgtaaaatttacaaatatggtttgcattgtatggtctgaaaaatttgagta Alignment from Pairagon GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG tctctactaatgcttttgtgctaaaaccatctgtccctgtccttctccagGTGGCACAGATTTATCAGAGCATTGAGTTTTCCCGTTTAACTTCTTTAGTGCCTTTTGTTGATGCTTTTCAACTGGAGCGGGCAATAGTAGATGCCGCCCGGCACTGTGACCTGCAGgtaaaatttacaaatatggtttgcattgtatggtctgaaaaatttgagta Alignment from Exonerate_protein2genome GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG tctctactaatgcttttgtgctaaaaccatctgtccctgtccttctccagGTGGCACAGATTTATCAGAGCATTGAGTTTTCCCGTTTAACTTCTTTAGTGCCTTTTGTTGATGCTTTTCAACTGGAGCGGGCAATAGTAGATGCCGCCCGGCACTGTGACCTGCAGgtaaaatttacaaatatggtttgcattgtatggtctgaaaaatttgagta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG tctctactaatgcttttgtgctaaaaccatctgtccctgtccttctccagGTGGCACAGATTTATCAGAGCATTGAGTTTTCCCGTTTAACTTCTTTAGTGCCTTTTGTTGATGCTTTTCAACTGGAGCGGGCAATAGTAGATGCCGCCCGGCACTGTGACCTGCAGgtaaaatttacaaatatggtttgcattgtatggtctgaaaaatttgagta #### Eif3a_ID13322_8 --> 0 - 0 Original Alignment GTCAGGTTCAGTGTGCTACAGTATGTTGTCCCAGAAGTGAAAGACCTTTACAACTGGTTGGAGGTGGAATTCAACCCACTAAAACTCTGTGAGAGAGTTACAAAG acttattacatggttaatgaacttttcgaccaaccatttcttctcactagGTCAGGTTCAGTGTACTGCAATACATTGTTCCAGAGGTGAAAGAACTTTACAACTGGCTGGAGGTAGAACTTAACCCTCTAAGAATCTGTGAGAGAGTTACTAAGgtaagtagggacatacaccattcccttcttcaatggctacttatatagta Alignment from CESAR GTCAGGTTCAGTGTGCTACAGTATGTTGTCCCAGAAGTGAAAGACCTTTACAACTGGTTGGAGGTGGAATTCAACCCACTAAAACTCTGTGAGAGAGTTACAAAG acttattacatggttaatgaacttttcgaccaaccatttcttctcactagGTCAGGTTCAGTGTACTGCAATACATTGTTCCAGAGGTGAAAGAACTTTACAACTGGCTGGAGGTAGAACTTAACCCTCTAAGAATCTGTGAGAGAGTTACTAAGgtaagtagggacatacaccattcccttcttcaatggctacttatatagta Alignment from Spaln_aa2Genome GTCAGGTTCAGTGTGCTACAGTATGTTGTCCCAGAAGTGAAAGACCTTTACAACTGGTTGGAGGTGGAATTCAACCCACTAAAACTCTGTGAGAGAGTTACAAAG acttattacatggttaatgaacttttcgaccaaccatttcttctcactagGTCAGGTTCAGTGTACTGCAATACATTGTTCCAGAGGTGAAAGAACTTTACAACTGGCTGGAGGTAGAACTTAACCCTCTAAGAATCTGTGAGAGAGTTACTAAGgtaagtagggacatacaccattcccttcttcaatggctacttatatagta Alignment from Spaln_nt2Genome GTCAGGTTCAGTGTGCTACAGTATGTTGTCCCAGAAGTGAAAGACCTTTACAACTGGTTGGAGGTGGAATTCAACCCACTAAAACTCTGTGAGAGAGTTACAAAG acttattacatggttaatgaacttttcgaccaaccatttcttctcactagGTCAGGTTCAGTGTACTGCAATACATTGTTCCAGAGGTGAAAGAACTTTACAACTGGCTGGAGGTAGAACTTAACCCTCTAAGAATCTGTGAGAGAGTTACTAAGgtaagtagggacatacaccattcccttcttcaatggctacttatatagta Alignment from Pairagon GTCAGGTTCAGTGTGCTACAGTATGTTGTCCCAGAAGTGAAAGACCTTTACAACTGGTTGGAGGTGGAATTCAACCCACTAAAACTCTGTGAGAGAGTTACAAAG acttattacatggttaatgaacttttcgaccaaccatttcttctcactagGTCAGGTTCAGTGTACTGCAATACATTGTTCCAGAGGTGAAAGAACTTTACAACTGGCTGGAGGTAGAACTTAACCCTCTAAGAATCTGTGAGAGAGTTACTAAGgtaagtagggacatacaccattcccttcttcaatggctacttatatagta Alignment from Exonerate_protein2genome GTCAGGTTCAGTGTGCTACAGTATGTTGTCCCAGAAGTGAAAGACCTTTACAACTGGTTGGAGGTGGAATTCAACCCACTAAAACTCTGTGAGAGAGTTACAAAG acttattacatggttaatgaacttttcgaccaaccatttcttctcactagGTCAGGTTCAGTGTACTGCAATACATTGTTCCAGAGGTGAAAGAACTTTACAACTGGCTGGAGGTAGAACTTAACCCTCTAAGAATCTGTGAGAGAGTTACTAAGgtaagtagggacatacaccattcccttcttcaatggctacttatatagta Alignment from Exonerate_coding2genome GTCAGGTTCAGTGTGCTACAGTATGTTGTCCCAGAAGTGAAAGACCTTTACAACTGGTTGGAGGTGGAATTCAACCCACTAAAACTCTGTGAGAGAGTTACAAAG acttattacatggttaatgaacttttcgaccaaccatttcttctcactagGTCAGGTTCAGTGTACTGCAATACATTGTTCCAGAGGTGAAAGAACTTTACAACTGGCTGGAGGTAGAACTTAACCCTCTAAGAATCTGTGAGAGAGTTACTAAGgtaagtagggacatacaccattcccttcttcaatggctacttatatagta Alignment from GeneWise GTCAGGTTCAGTGTGCTACAGTATGTTGTCCCAGAAGTGAAAGACCTTTACAACTGGTTGGAGGTGGAATTCAACCCACTAAAACTCTGTGAGAGAGTTACAAAG acttattacatggttaatgaacttttcgaccaaccatttcttctcactagGTCAGGTTCAGTGTACTGCAATACATTGTTCCAGAGGTGAAAGAACTTTACAACTGGCTGGAGGTAGAACTTAACCCTCTAAGAATCTGTGAGAGAGTTACTAAGgtaagtagggacatacaccattcccttcttcaatggctacttatatagta #### Eif3a_ID13323_7 --> 1 - 0 Original Alignment aATGTCTACTAGAGTCCTTTTGGCGACTCTTTCCATTCCTATTACTCCTGAGCGAACTGATATTGCTCGACTTTTGGATATGGATGGTATTATAGTTGAGAAGCAGCGACGCCTTGCCACATTGCTAGGTCTTCAAGCCCCACCCACACGAATCGGCCTAATTAATGATATG caggtggatgcctaattataagcttaacttcctctctttattttgcccagaATGTCTACTAGAGTTCTTCTGGCAACACTTTCCATTCCGGTAACCCCTGAACGAACCGATATTGCTTGCCTTCTGGATATGGATGGACTTATAGTTGAGAAGCAGCGAGACCTTGCCACATTGTTAGGTCTTGAGGCCCCACCCACACAAATTGGCCTGATTAATGACATGgtaaatgttgctgatgactgccttttgaaataaggtctaggctgtagtat Alignment from CESAR aATGTCTACTAGAGTCCTTTTGGCGACTCTTTCCATTCCTATTACTCCTGAGCGAACTGATATTGCTCGACTTTTGGATATGGATGGTATTATAGTTGAGAAGCAGCGACGCCTTGCCACATTGCTAGGTCTTCAAGCCCCACCCACACGAATCGGCCTAATTAATGATATG caggtggatgcctaattataagcttaacttcctctctttattttgcccagaATGTCTACTAGAGTTCTTCTGGCAACACTTTCCATTCCGGTAACCCCTGAACGAACCGATATTGCTTGCCTTCTGGATATGGATGGACTTATAGTTGAGAAGCAGCGAGACCTTGCCACATTGTTAGGTCTTGAGGCCCCACCCACACAAATTGGCCTGATTAATGACATGgtaaatgttgctgatgactgccttttgaaataaggtctaggctgtagtat Alignment from Spaln_aa2Genome AATGTCTACTAGAGTCCTTTTGGCGACTCTTTCCATTCCTATTACTCCTGAGCGAACTGATATTGCTCGACTTTTGGATATGGATGGTATTATAGTTGAGAAGCAGCGACGCCTTGCCACATTGCTAGGTCTTCAAGCCCCACCCACACGAATCGGCCTAATTAATGATATG caggtggatgcctaattataagcttaacttcctctctttattttgcccagAATGTCTACTAGAGTTCTTCTGGCAACACTTTCCATTCCGGTAACCCCTGAACGAACCGATATTGCTTGCCTTCTGGATATGGATGGACTTATAGTTGAGAAGCAGCGAGACCTTGCCACATTGTTAGGTCTTGAGGCCCCACCCACACAAATTGGCCTGATTAATGACATGgtaaatgttgctgatgactgccttttgaaataaggtctaggctgtagtat Alignment from Spaln_nt2Genome AATGTCTACTAGAGTCCTTTTGGCGACTCTTTCCATTCCTATTACTCCTGAGCGAACTGATATTGCTCGACTTTTGGATATGGATGGTATTATAGTTGAGAAGCAGCGACGCCTTGCCACATTGCTAGGTCTTCAAGCCCCACCCACACGAATCGGCCTAATTAATGATATG caggtggatgcctaattataagcttaacttcctctctttattttgcccagAATGTCTACTAGAGTTCTTCTGGCAACACTTTCCATTCCGGTAACCCCTGAACGAACCGATATTGCTTGCCTTCTGGATATGGATGGACTTATAGTTGAGAAGCAGCGAGACCTTGCCACATTGTTAGGTCTTGAGGCCCCACCCACACAAATTGGCCTGATTAATGACATGgtaaatgttgctgatgactgccttttgaaataaggtctaggctgtagtat Alignment from Pairagon AATGTCTACTAGAGTCCTTTTGGCGACTCTTTCCATTCCTATTACTCCTGAGCGAACTGATATTGCTCGACTTTTGGATATGGATGGTATTATAGTTGAGAAGCAGCGACGCCTTGCCACATTGCTAGGTCTTCAAGCCCCACCCACACGAATCGGCCTAATTAATGATATG caggtggatgcctaattataagcttaacttcctctctttattttgcccagAATGTCTACTAGAGTTCTTCTGGCAACACTTTCCATTCCGGTAACCCCTGAACGAACCGATATTGCTTGCCTTCTGGATATGGATGGACTTATAGTTGAGAAGCAGCGAGACCTTGCCACATTGTTAGGTCTTGAGGCCCCACCCACACAAATTGGCCTGATTAATGACATGgtaaatgttgctgatgactgccttttgaaataaggtctaggctgtagtat Alignment from Exonerate_protein2genome AATGTCTACTAGAGTCCTTTTGGCGACTCTTTCCATTCCTATTACTCCTGAGCGAACTGATATTGCTCGACTTTTGGATATGGATGGTATTATAGTTGAGAAGCAGCGACGCCTTGCCACATTGCTAGGTCTTCAAGCCCCACCCACACGAATCGGCCTAATTAATGATATG caggtggatgcctaattataagcttaacttcctctctttattttgcccagAATGTCTACTAGAGTTCTTCTGGCAACACTTTCCATTCCGGTAACCCCTGAACGAACCGATATTGCTTGCCTTCTGGATATGGATGGACTTATAGTTGAGAAGCAGCGAGACCTTGCCACATTGTTAGGTCTTGAGGCCCCACCCACACAAATTGGCCTGATTAATGACATGgtaaatgttgctgatgactgccttttgaaataaggtctaggctgtagtat Alignment from Exonerate_coding2genome AATGTCTACTAGAGTCCTTTTGGCGACTCTTTCCATTCCTATTACTCCTGAGCGAACTGATATTGCTCGACTTTTGGATATGGATGGTATTATAGTTGAGAAGCAGCGACGCCTTGCCACATTGCTAGGTCTTCAAGCCCCACCCACACGAATCGGCCTAATTAATGATATG caggtggatgcctaattataagcttaacttcctctctttattttgcccagAATGTCTACTAGAGTTCTTCTGGCAACACTTTCCATTCCGGTAACCCCTGAACGAACCGATATTGCTTGCCTTCTGGATATGGATGGACTTATAGTTGAGAAGCAGCGAGACCTTGCCACATTGTTAGGTCTTGAGGCCCCACCCACACAAATTGGCCTGATTAATGACATGgtaaatgttgctgatgactgccttttgaaataaggtctaggctgtagtat Alignment from GeneWise AATGTCTACTAGAGTCCTTTTGGCGACTCTTTCCATTCCTATTACTCCTGAGCGAACTGATATTGCTCGACTTTTGGATATGGATGGTATTATAGTTGAGAAGCAGCGACGCCTTGCCACATTGCTAGGTCTTCAAGCCCCACCCACACGAATCGGCCTAATTAATGATATG caggtggatgcctaattataagcttaacttcctctctttattttgcccagAATGTCTACTAGAGTTCTTCTGGCAACACTTTCCATTCCGGTAACCCCTGAACGAACCGATATTGCTTGCCTTCTGGATATGGATGGACTTATAGTTGAGAAGCAGCGAGACCTTGCCACATTGTTAGGTCTTGAGGCCCCACCCACACAAATTGGCCTGATTAATGACATGgtaaatgttgctgatgactgccttttgaaataaggtctaggctgtagtat #### Eif3a_ID13324_6 --> 0 - 2 Original Alignment GAAGCCTTCAAAGCTGTGGAAGATATTCATGGACTATTTTCCTTGTCTAAGAAACCACCTAAGCCTCAGTTGATGGCAAATTACTATAACAAAGTTTCAACAGTGTTTTGGAAATCTGGAAATGCTTTGTTCCATGCATCTACACTTCATCGTCTTTATCATCTGTCTAGAGAAATGAGAAAGAATCTTACACAAGAAGAGATGCAAag aaattactacttcaaagtgagtgaccagcctggaattttctccttcttagGAGGCCTTCAAAGCTGTGGAAGATATCCATGGGCTATTTTCACTGTCTAAGAAACCACCCAAGCCTCAGTTGATGGCAAATTATTATAACAAGGTCTCAACAGTGTTTTGGAAATCTGGGAATGCTTTGTTCCATGCATCCACACTTCATCGTCTGTACTACCTGTCCCGAGAAACAAGGAAAAACCTGACCCAAGAGGAGATGCAAaggtatgatggttgtgcaatgagtttgcaaactagacagcagaattacagta Alignment from CESAR GAAGCCTTCAAAGCTGTGGAAGATATTCATGGACTATTTTCCTTGTCTAAGAAACCACCTAAGCCTCAGTTGATGGCAAATTACTATAACAAAGTTTCAACAGTGTTTTGGAAATCTGGAAATGCTTTGTTCCATGCATCTACACTTCATCGTCTTTATCATCTGTCTAGAGAAATGAGAAAGAATCTTACACAAGAAGAGATGCAAag aaattactacttcaaagtgagtgaccagcctggaattttctccttcttagGAGGCCTTCAAAGCTGTGGAAGATATCCATGGGCTATTTTCACTGTCTAAGAAACCACCCAAGCCTCAGTTGATGGCAAATTATTATAACAAGGTCTCAACAGTGTTTTGGAAATCTGGGAATGCTTTGTTCCATGCATCCACACTTCATCGTCTGTACTACCTGTCCCGAGAAACAAGGAAAAACCTGACCCAAGAGGAGATGCAAaggtatgatggttgtgcaatgagtttgcaaactagacagcagaattacagta Alignment from Spaln_aa2Genome GAAGCCTTCAAAGCTGTGGAAGATATTCATGGACTATTTTCCTTGTCTAAGAAACCACCTAAGCCTCAGTTGATGGCAAATTACTATAACAAAGTTTCAACAGTGTTTTGGAAATCTGGAAATGCTTTGTTCCATGCATCTACACTTCATCGTCTTTATCATCTGTCTAGAGAAATGAGAAAGAATCTTACACAAGAAGAGATGCAAAG aaattactacttcaaagtgagtgaccagcctggaattttctccttcttagGAGGCCTTCAAAGCTGTGGAAGATATCCATGGGCTATTTTCACTGTCTAAGAAACCACCCAAGCCTCAGTTGATGGCAAATTATTATAACAAGGTCTCAACAGTGTTTTGGAAATCTGGGAATGCTTTGTTCCATGCATCCACACTTCATCGTCTGTACTACCTGTCCCGAGAAACAAGGAAAAACCTGACCCAAGAGGAGATGCAAAGgtatgatggttgtgcaatgagtttgcaaactagacagcagaattacagta Alignment from Spaln_nt2Genome GAAGCCTTCAAAGCTGTGGAAGATATTCATGGACTATTTTCCTTGTCTAAGAAACCACCTAAGCCTCAGTTGATGGCAAATTACTATAACAAAGTTTCAACAGTGTTTTGGAAATCTGGAAATGCTTTGTTCCATGCATCTACACTTCATCGTCTTTATCATCTGTCTAGAGAAATGAGAAAGAATCTTACACAAGAAGAGATGCAAAG aaattactacttcaaagtgagtgaccagcctggaattttctccttcttagGAGGCCTTCAAAGCTGTGGAAGATATCCATGGGCTATTTTCACTGTCTAAGAAACCACCCAAGCCTCAGTTGATGGCAAATTATTATAACAAGGTCTCAACAGTGTTTTGGAAATCTGGGAATGCTTTGTTCCATGCATCCACACTTCATCGTCTGTACTACCTGTCCCGAGAAACAAGGAAAAACCTGACCCAAGAGGAGATGCAAAGgtatgatggttgtgcaatgagtttgcaaactagacagcagaattacagta Alignment from Pairagon GAAGCCTTCAAAGCTGTGGAAGATATTCATGGACTATTTTCCTTGTCTAAGAAACCACCTAAGCCTCAGTTGATGGCAAATTACTATAACAAAGTTTCAACAGTGTTTTGGAAATCTGGAAATGCTTTGTTCCATGCATCTACACTTCATCGTCTTTATCATCTGTCTAGAGAAATGAGAAAGAATCTTACACAAGAAGAGATGCAAAG aaattactacttcaaagtgagtgaccagcctggaattttctccttcttagGAGGCCTTCAAAGCTGTGGAAGATATCCATGGGCTATTTTCACTGTCTAAGAAACCACCCAAGCCTCAGTTGATGGCAAATTATTATAACAAGGTCTCAACAGTGTTTTGGAAATCTGGGAATGCTTTGTTCCATGCATCCACACTTCATCGTCTGTACTACCTGTCCCGAGAAACAAGGAAAAACCTGACCCAAGAGGAGATGCAAAGgtatgatggttgtgcaatgagtttgcaaactagacagcagaattacagta Alignment from Exonerate_protein2genome GAAGCCTTCAAAGCTGTGGAAGATATTCATGGACTATTTTCCTTGTCTAAGAAACCACCTAAGCCTCAGTTGATGGCAAATTACTATAACAAAGTTTCAACAGTGTTTTGGAAATCTGGAAATGCTTTGTTCCATGCATCTACACTTCATCGTCTTTATCATCTGTCTAGAGAAATGAGAAAGAATCTTACACAAGAAGAGATGCAAAG aaattactacttcaaagtgagtgaccagcctggaattttctccttcttagGAGGCCTTCAAAGCTGTGGAAGATATCCATGGGCTATTTTCACTGTCTAAGAAACCACCCAAGCCTCAGTTGATGGCAAATTATTATAACAAGGTCTCAACAGTGTTTTGGAAATCTGGGAATGCTTTGTTCCATGCATCCACACTTCATCGTCTGTACTACCTGTCCCGAGAAACAAGGAAAAACCTGACCCAAGAGGAGATGCAAAGgtatgatggttgtgcaatgagtttgcaaactagacagcagaattacagta Alignment from Exonerate_coding2genome GAAGCCTTCAAAGCTGTGGAAGATATTCATGGACTATTTTCCTTGTCTAAGAAACCACCTAAGCCTCAGTTGATGGCAAATTACTATAACAAAGTTTCAACAGTGTTTTGGAAATCTGGAAATGCTTTGTTCCATGCATCTACACTTCATCGTCTTTATCATCTGTCTAGAGAAATGAGAAAGAATCTTACACAAGAAGAGATGCAAAG aaattactacttcaaagtgagtgaccagcctggaattttctccttcttagGAGGCCTTCAAAGCTGTGGAAGATATCCATGGGCTATTTTCACTGTCTAAGAAACCACCCAAGCCTCAGTTGATGGCAAATTATTATAACAAGGTCTCAACAGTGTTTTGGAAATCTGGGAATGCTTTGTTCCATGCATCCACACTTCATCGTCTGTACTACCTGTCCCGAGAAACAAGGAAAAACCTGACCCAAGAGGAGATGCAAAGgtatgatggttgtgcaatgagtttgcaaactagacagcagaattacagta Alignment from GeneWise GAAGCCTTCAAAGCTGTGGAAGATATTCATGGACTATTTTCCTTGTCTAAGAAACCACCTAAGCCTCAGTTGATGGCAAATTACTATAACAAAGTTTCAACAGTGTTTTGGAAATCTGGAAATGCTTTGTTCCATGCATCTACACTTCATCGTCTTTATCATCTGTCTAGAGAAATGAGAAAGAATCTTACACAAGAAGAGATGCAAAG aaattactacttcaaagtgagtgaccagcctggaattttctccttcttagGAGGCCTTCAAAGCTGTGGAAGATATCCATGGGCTATTTTCACTGTCTAAGAAACCACCCAAGCCTCAGTTGATGGCAAATTATTATAACAAGGTCTCAACAGTGTTTTGGAAATCTGGGAATGCTTTGTTCCATGCATCCACACTTCATCGTCTGTACTACCTGTCCCGAGAAACAAGGAAAAACCTGACCCAAGAGGAGATGCAAAGgtatgatggttgtgcaatgagtttgcaaactagacagcagaattacagta #### Eif3a_ID13328_2 --> 2 - 0 Original Alignment aaTTTCTTGAGGTTGGCAAAAAGCAGCCTGCCCTGGATGTTCTTTATGATGTAATGAAAAGTAAGAAGCACAGAACATGGCAGAAGATACATGAGCCAATTATGCTGAAATACTTGGAACTGTGTGTGGATCTTCGTAAGAGCCACTTGGCTAAGGAAGGGTTATATCAATATAAGAACATATGCCAACAG atgtgtgaaatacagggctcaaaaacaatgtgcctgttctccacacacagaaTTTCTTGAGGTTGGCAAAAAACAGCCTGCCCTAGATGTTCTTTATGATGTAATGAAAAGCAAGAAGCACAGAACTTGGCAAAAGATACATGAGCCAGTTATGCTGAAATACTTGGAACTATGTGTTGACCTTCGGAAAAGCCACTTGGCCAAGGAAGGATTACACCAATATAAGAATATATGTCACCAGgtgtgtagtttcactactttttggattaacaaaaggtaaattccatttcc Alignment from CESAR aaTTTCTTGAGGTTGGCAAAAAGCAGCCTGCCCTGGATGTTCTTTATGATGTAATGAAAAGTAAGAAGCACAGAACATGGCAGAAGATACATGAGCCAATTATGCTGAAATACTTGGAACTGTGTGTGGATCTTCGTAAGAGCCACTTGGCTAAGGAAGGGTTATATCAATATAAGAACATATGCCAACAG atgtgtgaaatacagggctcaaaaacaatgtgcctgttctccacacacagaaTTTCTTGAGGTTGGCAAAAAACAGCCTGCCCTAGATGTTCTTTATGATGTAATGAAAAGCAAGAAGCACAGAACTTGGCAAAAGATACATGAGCCAGTTATGCTGAAATACTTGGAACTATGTGTTGACCTTCGGAAAAGCCACTTGGCCAAGGAAGGATTACACCAATATAAGAATATATGTCACCAGgtgtgtagtttcactactttttggattaacaaaaggtaaattccatttcc Alignment from Spaln_aa2Genome AATTTCTTGAGGTTGGCAAAAAGCAGCCTGCCCTGGATGTTCTTTATGATGTAATGAAAAGTAAGAAGCACAGAACATGGCAGAAGATACATGAGCCAATTATGCTGAAATACTTGGAACTGTGTGTGGATCTTCGTAAGAGCCACTTGGCTAAGGAAGGGTTATATCAATATAAGAACATATGCCAACAG atgtgtgaaatacagggctcaaaaacaatgtgcctgttctccacacacagAATTTCTTGAGGTTGGCAAAAAACAGCCTGCCCTAGATGTTCTTTATGATGTAATGAAAAGCAAGAAGCACAGAACTTGGCAAAAGATACATGAGCCAGTTATGCTGAAATACTTGGAACTATGTGTTGACCTTCGGAAAAGCCACTTGGCCAAGGAAGGATTACACCAATATAAGAATATATGTCACCAGgtgtgtagtttcactactttttggattaacaaaaggtaaattccatttcc Alignment from Spaln_nt2Genome AATTTCTTGAGGTTGGCAAAAAGCAGCCTGCCCTGGATGTTCTTTATGATGTAATGAAAAGTAAGAAGCACAGAACATGGCAGAAGATACATGAGCCAATTATGCTGAAATACTTGGAACTGTGTGTGGATCTTCGTAAGAGCCACTTGGCTAAGGAAGGGTTATATCAATATAAGAACATATGCCAACAG atgtgtgaaatacagggctcaaaaacaatgtgcctgttctccacacacagAATTTCTTGAGGTTGGCAAAAAACAGCCTGCCCTAGATGTTCTTTATGATGTAATGAAAAGCAAGAAGCACAGAACTTGGCAAAAGATACATGAGCCAGTTATGCTGAAATACTTGGAACTATGTGTTGACCTTCGGAAAAGCCACTTGGCCAAGGAAGGATTACACCAATATAAGAATATATGTCACCAGgtgtgtagtttcactactttttggattaacaaaaggtaaattccatttcc Alignment from Pairagon AATTTCTTGAGGTTGGCAAAAAGCAGCCTGCCCTGGATGTTCTTTATGATGTAATGAAAAGTAAGAAGCACAGAACATGGCAGAAGATACATGAGCCAATTATGCTGAAATACTTGGAACTGTGTGTGGATCTTCGTAAGAGCCACTTGGCTAAGGAAGGGTTATATCAATATAAGAACATATGCCAACAG atgtgtgaaatacagggctcaaaaacaatgtgcctgttctccacacacagAATTTCTTGAGGTTGGCAAAAAACAGCCTGCCCTAGATGTTCTTTATGATGTAATGAAAAGCAAGAAGCACAGAACTTGGCAAAAGATACATGAGCCAGTTATGCTGAAATACTTGGAACTATGTGTTGACCTTCGGAAAAGCCACTTGGCCAAGGAAGGATTACACCAATATAAGAATATATGTCACCAGgtgtgtagtttcactactttttggattaacaaaaggtaaattccatttcc Alignment from Exonerate_protein2genome AATTTCTTGAGGTTGGCAAAAAGCAGCCTGCCCTGGATGTTCTTTATGATGTAATGAAAAGTAAGAAGCACAGAACATGGCAGAAGATACATGAGCCAATTATGCTGAAATACTTGGAACTGTGTGTGGATCTTCGTAAGAGCCACTTGGCTAAGGAAGGGTTATATCAATATAAGAACATATGCCAACAG atgtgtgaaatacagggctcaaaaacaatgtgcctgttctccacacacagAATTTCTTGAGGTTGGCAAAAAACAGCCTGCCCTAGATGTTCTTTATGATGTAATGAAAAGCAAGAAGCACAGAACTTGGCAAAAGATACATGAGCCAGTTATGCTGAAATACTTGGAACTATGTGTTGACCTTCGGAAAAGCCACTTGGCCAAGGAAGGATTACACCAATATAAGAATATATGTCACCAGgtgtgtagtttcactactttttggattaacaaaaggtaaattccatttcc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCGGCCTATTTCCAGAGGCCGGAAAATGCCCTCAAGCGCGCCAACGAATTTCTTGAGGTTGGCAAAAAGCAGCCTGCCCTGGATGTTCTTTATGATGTAATGAAAAGTAAGAAGCACAGAACATGGCAGAAGATACATGAGCCAATTATGCTGAAATACTTGGAACTGTGTGTGGATCTTCGTAAGAGCCACTTGGCTAAGGAAGGGTTATATCAATATAAGAACATATGCCAACAG tgtg---AAATACAGGGCTCAAAAACAATGTGCCTGTTCTCCACACACAGAATTTCTTGAGGTTGGCAAAAAACAGCCTGCCCTAGATGTTCTTTATGATGTAATGAAAAGCAAGAAGCACAGAACTTGGCAAAAGATACATGAGCCAGTTATGCTGAAATACTTGGAACTATGTGTTGACCTTCGGAAAAGCCACTTGGCCAAGGAAGGATTACACCAATATAAGAATATATGTCACCAGgtgtgtagtttcactactttttggattaacaaaaggtaaattccatttcc #### Eml3_ID2508_7 --> 1 - 2 Original Alignment tTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGAtg ttacttctgctaatccccccccatagcctattctcttctctgcctcgcagtTATGGATATAGAGGTCAGGATTCTCGCTCAAATTTATTTGTGCTACGCCCTGGTGATGTTGTCTACTTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGGAGGCCCAGGTGGGCCAGGAGGTGGTGGTCAGAGACATTATCGGGGCCACACAGACTGTGTTCGAtggtaagaaccgtggtagtggtaaacacttaattcctgttgacttcaaggaa Alignment from CESAR tTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGAtg ttacttctgctaatccccccccatagcctattctcttctctgcctcgcagtTATGGATATAGAGGTCAGGATTCTCGCTCAAATTTATTTGTGCTACGCCCTGGTGATGTTGTCTACTTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGGAGGCCCAGGTGGGCCAGGAGGTGGTGGTCAGAGACATTATCGGGGCCACACAGACTGTGTTCGAtggtaagaaccgtggtagtggtaaacacttaattcctgttgacttcaaggaa Alignment from Spaln_aa2Genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG ttacttctgctaatccccccccatagcctattctcttctctgcctcgcagTTATGGATATAGAGGTCAGGATTCTCGCTCAAATTTATTTGTGCTACGCCCTGGTGATGTTGTCTACTTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGGAGGCCCAGGTGGGCCAGGAGGTGGTGGTCAGAGACATTATCGGGGCCACACAGACTGTGTTCGATGgtaagaaccgtggtagtggtaaacacttaattcctgttgacttcaaggaa Alignment from Spaln_nt2Genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG ttacttctgctaatccccccccatagcctattctcttctctgcctcgcagTTATGGATATAGAGGTCAGGATTCTCGCTCAAATTTATTTGTGCTACGCCCTGGTGATGTTGTCTACTTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGGAGGCCCAGGTGGGCCAGGAGGTGGTGGTCAGAGACATTATCGGGGCCACACAGACTGTGTTCGATGgtaagaaccgtggtagtggtaaacacttaattcctgttgacttcaaggaa Alignment from Pairagon TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG ttacttctgctaatccccccccatagcctattctcttctctgcctcgcagTTATGGATATAGAGGTCAGGATTCTCGCTCAAATTTATTTGTGCTACGCCCTGGTGATGTTGTCTACTTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGGAGGCCCAGGTGGGCCAGGAGGTGGTGGTCAGAGACATTATCGGGGCCACACAGACTGTGTTCGATGgtaagaaccgtggtagtggtaaacacttaattcctgttgacttcaaggaa Alignment from Exonerate_protein2genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG ttacttctgctaatccccccccatagcctattctcttctctgcctcgcagTTATGGATATAGAGGTCAGGATTCTCGCTCAAATTTATTTGTGCTACGCCCTGGTGATGTTGTCTACTTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGGAGGCCCAGGTGGGCCAGGAGGTGGTGGTCAGAGACATTATCGGGGCCACACAGACTGTGTTCGATGgtaagaaccgtggtagtggtaaacacttaattcctgttgacttcaaggaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG ttacttctgctaatccccccccatagcctattctcttctctgcctcgcagTTATGGATATAGAGGTCAGGATTCTCGCTCAAATTTATTTGTGCTACGCCCTGGTGATGTTGTCTACTTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGGAGGCCCAGGTGGGCCAGGAGGTGGTGGTCAGAGACATTATCGGGGCCACACAGACTGTGTTCGATGgtaagaaccgtggtagtggtaaacacttaattcctgttgacttcaaggaa #### Eml3_ID2513_12 --> 0 - 1 Original Alignment AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAg ctattctacttattctacatgcctttgaagactcagctatgcccttgcagAAGGACAAAAAACCTAAATTTAGCCCATGCTTTATATTCTTGCCTGATGGAGATATCCTAACTGGGGACTCTGAGGGAAATATACTTACCTGGGACCAGAGTATCTCAGATTTGAGGACAATAGGCAGGGGAGGAGCAAAAggtgagataaggcaggtgagtacagtattgcagttgggagaatcagggaat Alignment from CESAR AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAg ctattctacttattctacatgcctttgaagactcagctatgcccttgcagAAGGACAAAAAACCTAAATTTAGCCCATGCTTTATATTCTTGCCTGATGGAGATATCCTAACTGGGGACTCTGAGGGAAATATACTTACCTGGGACCAGAGTATCTCAGATTTGAGGACAATAGGCAGGGGAGGAGCAAAAggtgagataaggcaggtgagtacagtattgcagttgggagaatcagggaat Alignment from Spaln_aa2Genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG ctattctacttattctacatgcctttgaagactcagctatgcccttgcagAAGGACAAAAAACCTAAATTTAGCCCATGCTTTATATTCTTGCCTGATGGAGATATCCTAACTGGGGACTCTGAGGGAAATATACTTACCTGGGACCAGAGTATCTCAGATTTGAGGACAATAGGCAGGGGAGGAGCAAAAGgtgagataaggcaggtgagtacagtattgcagttgggagaatcagggaat Alignment from Spaln_nt2Genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG ctattctacttattctacatgcctttgaagactcagctatgcccttgcagAAGGACAAAAAACCTAAATTTAGCCCATGCTTTATATTCTTGCCTGATGGAGATATCCTAACTGGGGACTCTGAGGGAAATATACTTACCTGGGACCAGAGTATCTCAGATTTGAGGACAATAGGCAGGGGAGGAGCAAAAGgtgagataaggcaggtgagtacagtattgcagttgggagaatcagggaat Alignment from Pairagon AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG ctattctacttattctacatgcctttgaagactcagctatgcccttgcagAAGGACAAAAAACCTAAATTTAGCCCATGCTTTATATTCTTGCCTGATGGAGATATCCTAACTGGGGACTCTGAGGGAAATATACTTACCTGGGACCAGAGTATCTCAGATTTGAGGACAATAGGCAGGGGAGGAGCAAAAGgtgagataaggcaggtgagtacagtattgcagttgggagaatcagggaat Alignment from Exonerate_protein2genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG ctattctacttattctacatgcctttgaagactcagctatgcccttgcagAAGGACAAAAAACCTAAATTTAGCCCATGCTTTATATTCTTGCCTGATGGAGATATCCTAACTGGGGACTCTGAGGGAAATATACTTACCTGGGACCAGAGTATCTCAGATTTGAGGACAATAGGCAGGGGAGGAGCAAAAGgtgagataaggcaggtgagtacagtattgcagttgggagaatcagggaat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG ctattctacttattctacatgcctttgaagactcagctatgcccttgcagAAGGACAAAAAACCTAAATTTAGCCCATGCTTTATATTCTTGCCTGATGGAGATATCCTAACTGGGGACTCTGAGGGAAATATACTTACCTGGGACCAGAGTATCTCAGATTTGAGGACAATAGGCAGGGGAGGAGCAAAAGgtgagataaggcaggtgagtacagtattgcagttgggagaatcagggaat #### Eml3_ID2515_14 --> 0 - 0 Original Alignment ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG ggatggggagacatgggaaatagtataatgacattgtgttttatttctagGTGCCAGAACATTTCGGTTCAGTAAGTGCGATTGCTGATGGACTTGGAGCTGAACTACTGGTGGGGACCACAAAGAATGCCTTACTAAGAGCAGATCTTGCCCAAGGTTTCTCTCCAGTAATCCAGgtaataactctgtaagacactgagggagggacccccactgttgccccagc Alignment from CESAR ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG ggatggggagacatgggaaatagtataatgacattgtgttttatttctagGTGCCAGAACATTTCGGTTCAGTAAGTGCGATTGCTGATGGACTTGGAGCTGAACTACTGGTGGGGACCACAAAGAATGCCTTACTAAGAGCAGATCTTGCCCAAGGTTTCTCTCCAGTAATCCAGgtaataactctgtaagacactgagggagggacccccactgttgccccagc Alignment from Spaln_aa2Genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG ggatggggagacatgggaaatagtataatgacattgtgttttatttctagGTGCCAGAACATTTCGGTTCAGTAAGTGCGATTGCTGATGGACTTGGAGCTGAACTACTGGTGGGGACCACAAAGAATGCCTTACTAAGAGCAGATCTTGCCCAAGGTTTCTCTCCAGTAATCCAGgtaataactctgtaagacactgagggagggacccccactgttgccccagc Alignment from Spaln_nt2Genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG ggatggggagacatgggaaatagtataatgacattgtgttttatttctagGTGCCAGAACATTTCGGTTCAGTAAGTGCGATTGCTGATGGACTTGGAGCTGAACTACTGGTGGGGACCACAAAGAATGCCTTACTAAGAGCAGATCTTGCCCAAGGTTTCTCTCCAGTAATCCAGgtaataactctgtaagacactgagggagggacccccactgttgccccagc Alignment from Pairagon ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG ggatggggagacatgggaaatagtataatgacattgtgttttatttctagGTGCCAGAACATTTCGGTTCAGTAAGTGCGATTGCTGATGGACTTGGAGCTGAACTACTGGTGGGGACCACAAAGAATGCCTTACTAAGAGCAGATCTTGCCCAAGGTTTCTCTCCAGTAATCCAGgtaataactctgtaagacactgagggagggacccccactgttgccccagc Alignment from Exonerate_protein2genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG ggatggggagacatgggaaatagtataatgacattgtgttttatttctagGTGCCAGAACATTTCGGTTCAGTAAGTGCGATTGCTGATGGACTTGGAGCTGAACTACTGGTGGGGACCACAAAGAATGCCTTACTAAGAGCAGATCTTGCCCAAGGTTTCTCTCCAGTAATCCAGgtaataactctgtaagacactgagggagggacccccactgttgccccagc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG ggatggggagacatgggaaatagtataatgacattgtgttttatttctagGTGCCAGAACATTTCGGTTCAGTAAGTGCGATTGCTGATGGACTTGGAGCTGAACTACTGGTGGGGACCACAAAGAATGCCTTACTAAGAGCAGATCTTGCCCAAGGTTTCTCTCCAGTAATCCAGgtaataactctgtaagacactgagggagggacccccactgttgccccagc #### Emx2_ID12980_2 --> 2 - 0 Original Alignment ggAACGACACAAGTCCCGAGAGTTTCCTTTTGCACAACGCTCTGGCCAGAAAGCCAAAGCGGATTCGAACCGCCTTCTCGCCGTCCCAGCTTTTAAGGCTAGAGCACGCTTTTGAGAAGAACCATTACGTGGTGGGAGCGGAAAGGAAGCAGCTGGCTCACAGTCTCAGTCTTACGGAAACTCAG aatgaaacctttagagagtccctcaatatgctatgaatactctcccacagggAATGACACAGGTCCTGAAAGCTTCCTTTTGCATAACATCCTGGCGAGAAAGCCAAAGCGAGTCCAGAATACTTTTTCACCATCACAACTTTTAAGGCTAGAACATGCTTTTGAGAAAAACCATTTTGTAGTGGGTGCAGATAGGAAGCAGCTGGCTCATAGCCTGAGTCTTCCAGAAACTCAGgtcagtattcagcagaactataaaccaagctcagtgagtcttcagcatgc Alignment from CESAR ggAACGACACAAGTCCCGAGAGTTTCCTTTTGCACAACGCTCTGGCCAGAAAGCCAAAGCGGATTCGAACCGCCTTCTCGCCGTCCCAGCTTTTAAGGCTAGAGCACGCTTTTGAGAAGAACCATTACGTGGTGGGAGCGGAAAGGAAGCAGCTGGCTCACAGTCTCAGTCTTACGGAAACTCAG aatgaaacctttagagagtccctcaatatgctatgaatactctcccacagggAATGACACAGGTCCTGAAAGCTTCCTTTTGCATAACATCCTGGCGAGAAAGCCAAAGCGAGTCCAGAATACTTTTTCACCATCACAACTTTTAAGGCTAGAACATGCTTTTGAGAAAAACCATTTTGTAGTGGGTGCAGATAGGAAGCAGCTGGCTCATAGCCTGAGTCTTCCAGAAACTCAGgtcagtattcagcagaactataaaccaagctcagtgagtcttcagcatgc Alignment from Spaln_aa2Genome GGAACGACACAAGTCCCGAGAGTTTCCTTTTGCACAACGCTCTGGCCAGAAAGCCAAAGCGGATTCGAACCGCCTTCTCGCCGTCCCAGCTTTTAAGGCTAGAGCACGCTTTTGAGAAGAACCATTACGTGGTGGGAGCGGAAAGGAAGCAGCTGGCTCACAGTCTCAGTCTTACGGAAACTCAG aatgaaacctttagagagtccctcaatatgctatgaatactctcccacagGGAATGACACAGGTCCTGAAAGCTTCCTTTTGCATAACATCCTGGCGAGAAAGCCAAAGCGAGTCCAGAATACTTTTTCACCATCACAACTTTTAAGGCTAGAACATGCTTTTGAGAAAAACCATTTTGTAGTGGGTGCAGATAGGAAGCAGCTGGCTCATAGCCTGAGTCTTCCAGAAACTCAGgtcagtattcagcagaactataaaccaagctcagtgagtcttcagcatgc Alignment from Spaln_nt2Genome GGAACGACACAAGTCCCGAGAGTTTCCTTTTGCACAACGCTCTGGCCAGAAAGCCAAAGCGGATTCGAACCGCCTTCTCGCCGTCCCAGCTTTTAAGGCTAGAGCACGCTTTTGAGAAGAACCATTACGTGGTGGGAGCGGAAAGGAAGCAGCTGGCTCACAGTCTCAGTCTTACGGAAACTCAG aatgaaacctttagagagtccctcaatatgctatgaatactctcccacagGGAATGACACAGGTCCTGAAAGCTTCCTTTTGCATAACATCCTGGCGAGAAAGCCAAAGCGAGTCCAGAATACTTTTTCACCATCACAACTTTTAAGGCTAGAACATGCTTTTGAGAAAAACCATTTTGTAGTGGGTGCAGATAGGAAGCAGCTGGCTCATAGCCTGAGTCTTCCAGAAACTCAGgtcagtattcagcagaactataaaccaagctcagtgagtcttcagcatgc Alignment from Pairagon GGAACGACACAAGTCCCGAGAGTTTCCTTTTGCACAACGCTCTGGCCAGAAAGCCAAAGCGGATTCGAACCGCCTTCTCGCCGTCCCAGCTTTTAAGGCTAGAGCACGCTTTTGAGAAGAACCATTACGTGGTGGGAGCGGAAAGGAAGCAGCTGGCTCACAGTCTCAGTCTTACGGAAACTCAG aatgaaacctttagagagtccctcaatatgctatgaatactctcccacagGGAATGACACAGGTCCTGAAAGCTTCCTTTTGCATAACATCCTGGCGAGAAAGCCAAAGCGAGTCCAGAATACTTTTTCACCATCACAACTTTTAAGGCTAGAACATGCTTTTGAGAAAAACCATTTTGTAGTGGGTGCAGATAGGAAGCAGCTGGCTCATAGCCTGAGTCTTCCAGAAACTCAGgtcagtattcagcagaactataaaccaagctcagtgagtcttcagcatgc Alignment from Exonerate_protein2genome GGAACGACACAAGTCCCGAGAGTTTCCTTTTGCACAACGCTCTGGCCAGAAAGCCAAAGCGGATTCGAACCGCCTTCTCGCCGTCCCAGCTTTTAAGGCTAGAGCACGCTTTTGAGAAGAACCATTACGTGGTGGGAGCGGAAAGGAAGCAGCTGGCTCACAGTCTCAGTCTTACGGAAACTCAG aatgaaacctttagagagtccctcaatatgctatgaatactctcccacagGGAATGACACAGGTCCTGAAAGCTTCCTTTTGCATAACATCCTGGCGAGAAAGCCAAAGCGAGTCCAGAATACTTTTTCACCATCACAACTTTTAAGGCTAGAACATGCTTTTGAGAAAAACCATTTTGTAGTGGGTGCAGATAGGAAGCAGCTGGCTCATAGCCTGAGTCTTCCAGAAACTCAGgtcagtattcagcagaactataaaccaagctcagtgagtcttcagcatgc Alignment from Exonerate_coding2genome GGAACGACACAAGTCCCGAGAGTTTCCTTTTGCACAACGCTCTGGCCAGAAAGCCAAAGCGGATTCGAACCGCCTTCTCGCCGTCCCAGCTTTTAAGGCTAGAGCACGCTTTTGAGAAGAACCATTACGTGGTGGGAGCGGAAAGGAAGCAGCTGGCTCACAGTCTCAGTCTTACGGAAACTCAG aatgaaacctttagagagtccctcaatatgctatgaatactctcccacagGGAATGACACAGGTCCTGAAAGCTTCCTTTTGCATAACATCCTGGCGAGAAAGCCAAAGCGAGTCCAGAATACTTTTTCACCATCACAACTTTTAAGGCTAGAACATGCTTTTGAGAAAAACCATTTTGTAGTGGGTGCAGATAGGAAGCAGCTGGCTCATAGCCTGAGTCTTCCAGAAACTCAGgtcagtattcagcagaactataaaccaagctcagtgagtcttcagcatgc Alignment from GeneWise GGAACGACACAAGTCCCGAGAGTTTCCTTTTGCACAACGCTCTGGCCAGAAAGCCAAAGCGGATTCGAACCGCCTTCTCGCCGTCCCAGCTTTTAAGGCTAGAGCACGCTTTTGAGAAGAACCATTACGTGGTGGGAGCGGAAAGGAAGCAGCTGGCTCACAGTCTCAGTCTTACGGAAACTCAG aatgaaacctttagagagtccctcaatatgctatgaatactctcccacagGGAATGACACAGGTCCTGAAAGCTTCCTTTTGCATAACATCCTGGCGAGAAAGCCAAAGCGAGTCCAGAATACTTTTTCACCATCACAACTTTTAAGGCTAGAACATGCTTTTGAGAAAAACCATTTTGTAGTGGGTGCAGATAGGAAGCAGCTGGCTCATAGCCTGAGTCTTCCAGAAACTCAGgtcagtattcagcagaactataaaccaagctcagtgagtcttcagcatgc #### Eno4_ID12837_9 --> 0 - 0 Original Alignment CCACCGATCACTGGCAAGGTATCTCACCTTGGCTGTTTAACCATCAACTACGACGCCATAGAGCAGCCACTGCTGCTGCTTCAGGGGATCTGCTCAAACCTGGGGTTGGAACTGGGAGTGAACTTCCATCTAGCCATCAACTGTGCTGGGCATGAGCTGATGGACTAC cctcatcaggttcaatactatctcataggatactatttctctgtccccagCCACCTATCACAGGTAAGGTATCACATGTTGGGTGTTTGACCATCAACTATGATGCCATTGGGCAGCCATTACTGCTGCTACAAGGCATTTGCTCTAACCTGTCATCAGAACTAGGGGTAAACTTCCATCTTGCAGTCAACTGTGCTGAACATGAGCTCATGGACTATgtaaggtcatgtttaaactgctgatacctcgtttatggtactatagtgca Alignment from CESAR CCACCGATCACTGGCAAGGTATCTCACCTTGGCTGTTTAACCATCAACTACGACGCCATAGAGCAGCCACTGCTGCTGCTTCAGGGGATCTGCTCAAACCTGGGGTTGGAACTGGGAGTGAACTTCCATCTAGCCATCAACTGTGCTGGGCATGAGCTGATGGACTAC cctcatcaggttcaatactatctcataggatactatttctctgtccccagCCACCTATCACAGGTAAGGTATCACATGTTGGGTGTTTGACCATCAACTATGATGCCATTGGGCAGCCATTACTGCTGCTACAAGGCATTTGCTCTAACCTGTCATCAGAACTAGGGGTAAACTTCCATCTTGCAGTCAACTGTGCTGAACATGAGCTCATGGACTATgtaaggtcatgtttaaactgctgatacctcgtttatggtactatagtgca Alignment from Spaln_aa2Genome CCACCGATCACTGGCAAGGTATCTCACCTTGGCTGTTTAACCATCAACTACGACGCCATAGAGCAGCCACTGCTGCTGCTTCAGGGGATCTGCTCAAACCTGGGGTTGGAACTGGGAGTGAACTTCCATCTAGCCATCAACTGTGCTGGGCATGAGCTGATGGACTAC cctcatcaggttcaatactatctcataggatactatttctctgtccccagCCACCTATCACAGGTAAGGTATCACATGTTGGGTGTTTGACCATCAACTATGATGCCATTGGGCAGCCATTACTGCTGCTACAAGGCATTTGCTCTAACCTGTCATCAGAACTAGGGGTAAACTTCCATCTTGCAGTCAACTGTGCTGAACATGAGCTCATGGACTATgtaaggtcatgtttaaactgctgatacctcgtttatggtactatagtgca Alignment from Spaln_nt2Genome CCACCGATCACTGGCAAGGTATCTCACCTTGGCTGTTTAACCATCAACTACGACGCCATAGAGCAGCCACTGCTGCTGCTTCAGGGGATCTGCTCAAACCTGGGGTTGGAACTGGGAGTGAACTTCCATCTAGCCATCAACTGTGCTGGGCATGAGCTGATGGACTAC cctcatcaggttcaatactatctcataggatactatttctctgtccccagCCACCTATCACAGGTAAGGTATCACATGTTGGGTGTTTGACCATCAACTATGATGCCATTGGGCAGCCATTACTGCTGCTACAAGGCATTTGCTCTAACCTGTCATCAGAACTAGGGGTAAACTTCCATCTTGCAGTCAACTGTGCTGAACATGAGCTCATGGACTATgtaaggtcatgtttaaactgctgatacctcgtttatggtactatagtgca Alignment from Pairagon CCACCGATCACTGGCAAGGTATCTCACCTTGGCTGTTTAACCATCAACTACGACGCCATAGAGCAGCCACTGCTGCTGCTTCAGGGGATCTGCTCAAACCTGGGGTTGGAACTGGGAGTGAACTTCCATCTAGCCATCAACTGTGCTGGGCATGAGCTGATGGACTAC cctcatcaggttcaatactatctcataggatactatttctctgtccccagCCACCTATCACAGGTAAGGTATCACATGTTGGGTGTTTGACCATCAACTATGATGCCATTGGGCAGCCATTACTGCTGCTACAAGGCATTTGCTCTAACCTGTCATCAGAACTAGGGGTAAACTTCCATCTTGCAGTCAACTGTGCTGAACATGAGCTCATGGACTATgtaaggtcatgtttaaactgctgatacctcgtttatggtactatagtgca Alignment from Exonerate_protein2genome CCACCGATCACTGGCAAGGTATCTCACCTTGGCTGTTTAACCATCAACTACGACGCCATAGAGCAGCCACTGCTGCTGCTTCAGGGGATCTGCTCAAACCTGGGGTTGGAACTGGGAGTGAACTTCCATCTAGCCATCAACTGTGCTGGGCATGAGCTGATGGACTAC cctcatcaggttcaatactatctcataggatactatttctctgtccccagCCACCTATCACAGGTAAGGTATCACATGTTGGGTGTTTGACCATCAACTATGATGCCATTGGGCAGCCATTACTGCTGCTACAAGGCATTTGCTCTAACCTGTCATCAGAACTAGGGGTAAACTTCCATCTTGCAGTCAACTGTGCTGAACATGAGCTCATGGACTATgtaaggtcatgtttaaactgctgatacctcgtttatggtactatagtgca Alignment from Exonerate_coding2genome CCACCGATCACTGGCAAGGTATCTCACCTTGGCTGTTTAACCATCAACTACGACGCCATAGAGCAGCCACTGCTGCTGCTTCAGGGGATCTGCTCAAACCTGGGGTTGGAACTGGGAGTGAACTTCCATCTAGCCATCAACTGTGCTGGGCATGAGCTGATGGACTAC cctcatcaggttcaatactatctcataggatactatttctctgtccccagCCACCTATCACAGGTAAGGTATCACATGTTGGGTGTTTGACCATCAACTATGATGCCATTGGGCAGCCATTACTGCTGCTACAAGGCATTTGCTCTAACCTGTCATCAGAACTAGGGGTAAACTTCCATCTTGCAGTCAACTGTGCTGAACATGAGCTCATGGACTATgtaaggtcatgtttaaactgctgatacctcgtttatggtactatagtgca Alignment from GeneWise CCACCGATCACTGGCAAGGTATCTCACCTTGGCTGTTTAACCATCAACTACGACGCCATAGAGCAGCCACTGCTGCTGCTTCAGGGGATCTGCTCAAACCTGGGGTTGGAACTGGGAGTGAACTTCCATCTAGCCATCAACTGTGCTGGGCATGAGCTGATGGACTAC cctcatcaggttcaatactatctcataggatactatttctctgtccccagCCACCTATCACAGGTAAGGTATCACATGTTGGGTGTTTGACCATCAACTATGATGCCATTGGGCAGCCATTACTGCTGCTACAAGGCATTTGCTCTAACCTGTCATCAGAACTAGGGGTAAACTTCCATCTTGCAGTCAACTGTGCTGAACATGAGCTCATGGACTATgtaaggtcatgtttaaactgctgatacctcgtttatggtactatagtgca #### Entpd1_ID8009_4 --> 2 - 2 Original Alignment gtCCTGGAATCTCAAAATATGCTCAGAAAACAGATGAAATCGGTGCGTACCTGGCCGAATGCATGGAACTGTCCACCGAACTGATACCAACATCCAAGCATCACCAGACTCCTGTCTACCTGGGAGCCACAGCAGGCATGCGCTTGCTTag ctgtcaccgcatccttatcatctataggtgctgttgtttccatcttccagggTCAGGAATCTCAAAATATACGCAGAAAGCAGATGAAATTGGTGCATATTTGGCTGAATGTACAGAACAGTCCGCAGAGCTAGTACCCACATCTAAGCATCACCAGACTCCTGTTTACTTTGGAGCCACTGCAGGCACACGACTGCTTcggtgagattttacatatacttcacaggattcttcaccaatagtgtatatta Alignment from CESAR gtCCTGGAATCTCAAAATATGCTCAGAAAACAGATGAAATCGGTGCGTACCTGGCCGAATGCATGGAACTGTCCACCGAACTGATACCAACATCCAAGCATCACCAGACTCCTGTCTACCTGGGAGCCACAGCAGGCATGCGCTTGCTTag ctgtcaccgcatccttatcatctataggtgctgttgtttccatcttccagggTCAGGAATCTCAAAATATACGCAGAAAGCAGATGAAATTGGTGCATATTTGGCTGAATGTACAGAACAGTCCGCAGAGCTAGTACCCACATCTAAGCATCACCAGACTCCTGTTTACTTTGGAGCCACTGCAGGCACACGACTGCTTcggtgagattttacatatacttcacaggattcttcaccaatagtgtatatta Alignment from Spaln_aa2Genome GTCCTGGAATCTCAAAATATGCTCAGAAAACAGATGAAATCGGTGCGTACCTGGCCGAATGCATGGAACTGTCCACCGAACTGATACCAACATCCAAGCATCACCAGACTCCTGTCTACCTGGGAGCCACAGCAGGCATGCGCTTGCTTAG ctgtcaccgcatccttatcatctataggtgctgttgtttccatcttccagGGTCAGGAATCTCAAAATATACGCAGAAAGCAGATGAAATTGGTGCATATTTGGCTGAATGTACAGAACAGTCCGCAGAGCTAGTACCCACATCTAAGCATCACCAGACTCCTGTTTACTTTGGAGCCACTGCAGGCACACGACTGCTTCGgtgagattttacatatacttcacaggattcttcaccaatagtgtatatta Alignment from Spaln_nt2Genome GTCCTGGAATCTCAAAATATGCTCAGAAAACAGATGAAATCGGTGCGTACCTGGCCGAATGCATGGAACTGTCCACCGAACTGATACCAACATCCAAGCATCACCAGACTCCTGTCTACCTGGGAGCCACAGCAGGCATGCGCTTGCTTAG ctgtcaccgcatccttatcatctataggtgctgttgtttccatcttccagGGTCAGGAATCTCAAAATATACGCAGAAAGCAGATGAAATTGGTGCATATTTGGCTGAATGTACAGAACAGTCCGCAGAGCTAGTACCCACATCTAAGCATCACCAGACTCCTGTTTACTTTGGAGCCACTGCAGGCACACGACTGCTTCGgtgagattttacatatacttcacaggattcttcaccaatagtgtatatta Alignment from Pairagon GTCCTGGAATCTCAAAATATGCTCAGAAAACAGATGAAATCGGTGCGTACCTGGCCGAATGCATGGAACTGTCCACCGAACTGATACCAACATCCAAGCATCACCAGACTCCTGTCTACCTGGGAGCCACAGCAGGCATGCGCTTGCTTAG ctgtcaccgcatccttatcatctataggtgctgttgtttccatcttccagGGTCAGGAATCTCAAAATATACGCAGAAAGCAGATGAAATTGGTGCATATTTGGCTGAATGTACAGAACAGTCCGCAGAGCTAGTACCCACATCTAAGCATCACCAGACTCCTGTTTACTTTGGAGCCACTGCAGGCACACGACTGCTTCGgtgagattttacatatacttcacaggattcttcaccaatagtgtatatta Alignment from Exonerate_protein2genome GTCCTGGAATCTCAAAATATGCTCAGAAAACAGATGAAATCGGTGCGTACCTGGCCGAATGCATGGAACTGTCCACCGAACTGATACCAACATCCAAGCATCACCAGACTCCTGTCTACCTGGGAGCCACAGCAGGCATGCGCTTGCTTAG ctgtcaccgcatccttatcatctataggtgctgttgtttccatcttccagGGTCAGGAATCTCAAAATATACGCAGAAAGCAGATGAAATTGGTGCATATTTGGCTGAATGTACAGAACAGTCCGCAGAGCTAGTACCCACATCTAAGCATCACCAGACTCCTGTTTACTTTGGAGCCACTGCAGGCACACGACTGCTTCGgtgagattttacatatacttcacaggattcttcaccaatagtgtatatta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTCCTGGAATCTCAAAATATGCTCAGAAAACAGATGAAATCGGTGCGTACCTGGCCGAATGCATGGAACTGTCCACCGAACTGATACCAACATCCAAGCATCACCAGACTCCTGTCTACCTGGGAGCCACAGCAGGCATGCGCTTGCTTAG ctgtcaccgcatccttatcatctataggtgctgttgtttccatcttccagGGTCAGGAATCTCAAAATATACGCAGAAAGCAGATGAAATTGGTGCATATTTGGCTGAATGTACAGAACAGTCCGCAGAGCTAGTACCCACATCTAAGCATCACCAGACTCCTGTTTACTTTGGAGCCACTGCAGGCACACGACTGCTTCGgtgagattttacatatacttcacaggattcttcaccaatagtgtatatta #### Entpd1_ID8010_5 --> 1 - 0 Original Alignment aATGGAAAGCGAACAATCGGCAGACGAGGTCCTGGCTGCA------GTGTCAACAAGCCTTAAGAGCTACCCCTTTGACTTCCAGGGTGCCAAGATCATCACTGGACAAGAGGAAGGTGCCTATGGGTGGATTACTATTAACTATCTGCTGGGCAGATTCACTCAG accccctagtcaacttccccagtataatttcctgttatcctcaatggcagaATGGATAGTGAACAATCAGCTGATGAGGTTCTAGCTTCAGCTACAGTGTTAACAAGTCTCAAAAGCACTCCTTTTCAATTTCAGAGTGCCAAGATTATTACTGGTCACGAGGAGGGTGCTTATGGGTGGATAACTATTAACTACTTATTGGGTAGGTTCACCCATgtgagtatactagaaactaataaaactttagtggataaagtctgtgcact Alignment from CESAR aATGGAAAGCGAACAATCGGCAGACGAGGTCCTGGCT------GCAGTGTCAACAAGCCTTAAGAGCTACCCCTTTGACTTCCAGGGTGCCAAGATCATCACTGGACAAGAGGAAGGTGCCTATGGGTGGATTACTATTAACTATCTGCTGGGCAGATTCACTCAG accccctagtcaacttccccagtataatttcctgttatcctcaatggcagaATGGATAGTGAACAATCAGCTGATGAGGTTCTAGCTTCAGCTACAGTGTTAACAAGTCTCAAAAGCACTCCTTTTCAATTTCAGAGTGCCAAGATTATTACTGGTCACGAGGAGGGTGCTTATGGGTGGATAACTATTAACTACTTATTGGGTAGGTTCACCCATgtgagtatactagaaactaataaaactttagtggataaagtctgtgcact Alignment from Spaln_aa2Genome AATGGAAAGCGAACAATCGGCAGACGAGGTCCTG------GCTGCAGTGTCAACAAGCCTTAAGAGCTACCCCTTTGACTTCCAGGGTGCCAAGATCATCACTGGACAAGAGGAAGGTGCCTATGGGTGGATTACTATTAACTATCTGCTGGGCAGATTCACTCAG accccctagtcaacttccccagtataatttcctgttatcctcaatggcagAATGGATAGTGAACAATCAGCTGATGAGGTTCTAGCTTCAGCTACAGTGTTAACAAGTCTCAAAAGCACTCCTTTTCAATTTCAGAGTGCCAAGATTATTACTGGTCACGAGGAGGGTGCTTATGGGTGGATAACTATTAACTACTTATTGGGTAGGTTCACCCATgtgagtatactagaaactaataaaactttagtggataaagtctgtgcact Alignment from Spaln_nt2Genome AATGGAAAGCGAACAATCGGCAGACGAGGTCCTG------GCTGCAGTGTCAACAAGCCTTAAGAGCTACCCCTTTGACTTCCAGGGTGCCAAGATCATCACTGGACAAGAGGAAGGTGCCTATGGGTGGATTACTATTAACTATCTGCTGGGCAGATTCACTCAG accccctagtcaacttccccagtataatttcctgttatcctcaatggcagAATGGATAGTGAACAATCAGCTGATGAGGTTCTAGCTTCAGCTACAGTGTTAACAAGTCTCAAAAGCACTCCTTTTCAATTTCAGAGTGCCAAGATTATTACTGGTCACGAGGAGGGTGCTTATGGGTGGATAACTATTAACTACTTATTGGGTAGGTTCACCCATgtgagtatactagaaactaataaaactttagtggataaagtctgtgcact Alignment from Pairagon AATGGAAAGCGAACAATCGGCAGACGAGGTCCT------GGCTGCAGTGTCAACAAGCCTTAAGAGCTACCCCTTTGACTTCCAGGGTGCCAAGATCATCACTGGACAAGAGGAAGGTGCCTATGGGTGGATTACTATTAACTATCTGCTGGGCAGATTCACTCAG accccctagtcaacttccccagtataatttcctgttatcctcaatggcagAATGGATAGTGAACAATCAGCTGATGAGGTTCTAGCTTCAGCTACAGTGTTAACAAGTCTCAAAAGCACTCCTTTTCAATTTCAGAGTGCCAAGATTATTACTGGTCACGAGGAGGGTGCTTATGGGTGGATAACTATTAACTACTTATTGGGTAGGTTCACCCATgtgagtatactagaaactaataaaactttagtggataaagtctgtgcact Alignment from Exonerate_protein2genome AATGGAAAGCGAACAATCGGCAGACGAGGTCCTGGCTGCA------GTGTCAACAAGCCTTAAGAGCTACCCCTTTGACTTCCAGGGTGCCAAGATCATCACTGGACAAGAGGAAGGTGCCTATGGGTGGATTACTATTAACTATCTGCTGGGCAGATTCACTCAG accccctagtcaacttccccagtataatttcctgttatcctcaatggcagAATGGATAGTGAACAATCAGCTGATGAGGTTCTAGCTTCAGCTACAGTGTTAACAAGTCTCAAAAGCACTCCTTTTCAATTTCAGAGTGCCAAGATTATTACTGGTCACGAGGAGGGTGCTTATGGGTGGATAACTATTAACTACTTATTGGGTAGGTTCACCCATgtgagtatactagaaactaataaaactttagtggataaagtctgtgcact Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AATGGAAAGCGAACAATCGGCAGACGAGGTCCTGGCTGCA------GTGTCAACAAGCCTTAAGAGCTACCCCTTTGACTTCCAGGGTGCCAAGATCATCACTGGACAAGAGGAAGGTGCCTATGGGTGGATTACTATTAACTATCTGCTGGGCAGATTCACTCAG accccctagtcaacttccccagtataatttcctgttatcctcaatggcagAATGGATAGTGAACAATCAGCTGATGAGGTTCTAGCTTCAGCTACAGTGTTAACAAGTCTCAAAAGCACTCCTTTTCAATTTCAGAGTGCCAAGATTATTACTGGTCACGAGGAGGGTGCTTATGGGTGGATAACTATTAACTACTTATTGGGTAGGTTCACCCATgtgagtatactagaaactaataaaactttagtggataaagtctgtgcact #### Entpd1_ID8015_9 --> 0 - 0 Original Alignment ACAAAGACATCTTATCCTTCAGTAAAGGAGAAGTACCTGAGTGAGTACTGCTTCTCGGGCGCCTACATCCTCTCTCTCCTGCAAGGCTATAACTTCACAGACAGCTCCTGGGAACAGATTCATTTTATGGGCAAG cagccatgaaagtcatgtacaaaaactctatcttgttgtcgtttctttagACAGAGACATCATATCCATCAATAAAGGAGAATTACCTGAGTGAATACTGTTTCTCTGGTGCTTTTATCCTATCACTTTTGCAAGGCTACAACTTCACTGACAGCTCCTGGGAACAAACCCACTTCATGGGCAAAgtgtgttatagccgagaccagggacaccacacctaaaagattgttccctt Alignment from CESAR ACAAAGACATCTTATCCTTCAGTAAAGGAGAAGTACCTGAGTGAGTACTGCTTCTCGGGCGCCTACATCCTCTCTCTCCTGCAAGGCTATAACTTCACAGACAGCTCCTGGGAACAGATTCATTTTATGGGCAAG cagccatgaaagtcatgtacaaaaactctatcttgttgtcgtttctttagACAGAGACATCATATCCATCAATAAAGGAGAATTACCTGAGTGAATACTGTTTCTCTGGTGCTTTTATCCTATCACTTTTGCAAGGCTACAACTTCACTGACAGCTCCTGGGAACAAACCCACTTCATGGGCAAAgtgtgttatagccgagaccagggacaccacacctaaaagattgttccctt Alignment from Spaln_aa2Genome ACAAAGACATCTTATCCTTCAGTAAAGGAGAAGTACCTGAGTGAGTACTGCTTCTCGGGCGCCTACATCCTCTCTCTCCTGCAAGGCTATAACTTCACAGACAGCTCCTGGGAACAGATTCATTTTATGGGCAAG cagccatgaaagtcatgtacaaaaactctatcttgttgtcgtttctttagACAGAGACATCATATCCATCAATAAAGGAGAATTACCTGAGTGAATACTGTTTCTCTGGTGCTTTTATCCTATCACTTTTGCAAGGCTACAACTTCACTGACAGCTCCTGGGAACAAACCCACTTCATGGGCAAAgtgtgttatagccgagaccagggacaccacacctaaaagattgttccctt Alignment from Spaln_nt2Genome ACAAAGACATCTTATCCTTCAGTAAAGGAGAAGTACCTGAGTGAGTACTGCTTCTCGGGCGCCTACATCCTCTCTCTCCTGCAAGGCTATAACTTCACAGACAGCTCCTGGGAACAGATTCATTTTATGGGCAAG cagccatgaaagtcatgtacaaaaactctatcttgttgtcgtttctttagACAGAGACATCATATCCATCAATAAAGGAGAATTACCTGAGTGAATACTGTTTCTCTGGTGCTTTTATCCTATCACTTTTGCAAGGCTACAACTTCACTGACAGCTCCTGGGAACAAACCCACTTCATGGGCAAAgtgtgttatagccgagaccagggacaccacacctaaaagattgttccctt Alignment from Pairagon ACAAAGACATCTTATCCTTCAGTAAAGGAGAAGTACCTGAGTGAGTACTGCTTCTCGGGCGCCTACATCCTCTCTCTCCTGCAAGGCTATAACTTCACAGACAGCTCCTGGGAACAGATTCATTTTATGGGCAAG cagccatgaaagtcatgtacaaaaactctatcttgttgtcgtttctttagACAGAGACATCATATCCATCAATAAAGGAGAATTACCTGAGTGAATACTGTTTCTCTGGTGCTTTTATCCTATCACTTTTGCAAGGCTACAACTTCACTGACAGCTCCTGGGAACAAACCCACTTCATGGGCAAAgtgtgttatagccgagaccagggacaccacacctaaaagattgttccctt Alignment from Exonerate_protein2genome ACAAAGACATCTTATCCTTCAGTAAAGGAGAAGTACCTGAGTGAGTACTGCTTCTCGGGCGCCTACATCCTCTCTCTCCTGCAAGGCTATAACTTCACAGACAGCTCCTGGGAACAGATTCATTTTATGGGCAAG cagccatgaaagtcatgtacaaaaactctatcttgttgtcgtttctttagACAGAGACATCATATCCATCAATAAAGGAGAATTACCTGAGTGAATACTGTTTCTCTGGTGCTTTTATCCTATCACTTTTGCAAGGCTACAACTTCACTGACAGCTCCTGGGAACAAACCCACTTCATGGGCAAAgtgtgttatagccgagaccagggacaccacacctaaaagattgttccctt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ACAAAGACATCTTATCCTTCAGTAAAGGAGAAGTACCTGAGTGAGTACTGCTTCTCGGGCGCCTACATCCTCTCTCTCCTGCAAGGCTATAACTTCACAGACAGCTCCTGGGAACAGATTCATTTTATGGGCAAG cagccatgaaagtcatgtacaaaaactctatcttgttgtcgtttctttagACAGAGACATCATATCCATCAATAAAGGAGAATTACCTGAGTGAATACTGTTTCTCTGGTGCTTTTATCCTATCACTTTTGCAAGGCTACAACTTCACTGACAGCTCCTGGGAACAAACCCACTTCATGGGCAAAgtgtgttatagccgagaccagggacaccacacctaaaagattgttccctt #### Entpd7_ID8801_10 --> 0 - 2 Original Alignment GATTACTGTGGCATGGCGTGGCCGGTGCTAGCCCAGAGATTCAAGAACGGCCTCTTTTCTTCACACGCAGACGAGCATCGACTCaa ttgggctaggtctgtctatggtttttacgatttccatttgatctcattagGACTACTGTGGCATGGCATGGCCAGTGCTAGCCCAGAGATTCAAGAATGGCCTCTTTTCTTCACATGCAGATGAGCATCGACTCaagtaaggcattttctgaagtgtgatatcctctcccaaagcctccagtgtga Alignment from CESAR GATTACTGTGGCATGGCGTGGCCGGTGCTAGCCCAGAGATTCAAGAACGGCCTCTTTTCTTCACACGCAGACGAGCATCGACTCaa ttgggctaggtctgtctatggtttttacgatttccatttgatctcattagGACTACTGTGGCATGGCATGGCCAGTGCTAGCCCAGAGATTCAAGAATGGCCTCTTTTCTTCACATGCAGATGAGCATCGACTCaagtaaggcattttctgaagtgtgatatcctctcccaaagcctccagtgtga Alignment from Spaln_aa2Genome GATTACTGTGGCATGGCGTGGCCGGTGCTAGCCCAGAGATTCAAGAACGGCCTCTTTTCTTCACACGCAGACGAGCATCGACTCAA ttgggctaggtctgtctatggtttttacgatttccatttgatctcattagGACTACTGTGGCATGGCATGGCCAGTGCTAGCCCAGAGATTCAAGAATGGCCTCTTTTCTTCACATGCAGATGAGCATCGACTCAAgtaaggcattttctgaagtgtgatatcctctcccaaagcctccagtgtga Alignment from Spaln_nt2Genome GATTACTGTGGCATGGCGTGGCCGGTGCTAGCCCAGAGATTCAAGAACGGCCTCTTTTCTTCACACGCAGACGAGCATCGACTCAA ttgggctaggtctgtctatggtttttacgatttccatttgatctcattagGACTACTGTGGCATGGCATGGCCAGTGCTAGCCCAGAGATTCAAGAATGGCCTCTTTTCTTCACATGCAGATGAGCATCGACTCAAgtaaggcattttctgaagtgtgatatcctctcccaaagcctccagtgtga Alignment from Pairagon GATTACTGTGGCATGGCGTGGCCGGTGCTAGCCCAGAGATTCAAGAACGGCCTCTTTTCTTCACACGCAGACGAGCATCGACTCAA ttgggctaggtctgtctatggtttttacgatttccatttgatctcattagGACTACTGTGGCATGGCATGGCCAGTGCTAGCCCAGAGATTCAAGAATGGCCTCTTTTCTTCACATGCAGATGAGCATCGACTCAAgtaaggcattttctgaagtgtgatatcctctcccaaagcctccagtgtga Alignment from Exonerate_protein2genome GATTACTGTGGCATGGCGTGGCCGGTGCTAGCCCAGAGATTCAAGAACGGCCTCTTTTCTTCACACGCAGACGAGCATCGACTCAA ttgggctaggtctgtctatggtttttacgatttccatttgatctcattagGACTACTGTGGCATGGCATGGCCAGTGCTAGCCCAGAGATTCAAGAATGGCCTCTTTTCTTCACATGCAGATGAGCATCGACTCAAgtaaggcattttctgaagtgtgatatcctctcccaaagcctccagtgtga Alignment from Exonerate_coding2genome GATTACTGTGGCATGGCGTGGCCGGTGCTAGCCCAGAGATTCAAGAACGGCCTCTTTTCTTCACACGCAGACGAGCATCGACTCAA ttgggctaggtctgtctatggtttttacgatttccatttgatctcattagGACTACTGTGGCATGGCATGGCCAGTGCTAGCCCAGAGATTCAAGAATGGCCTCTTTTCTTCACATGCAGATGAGCATCGACTCAAgtaaggcattttctgaagtgtgatatcctctcccaaagcctccagtgtga Alignment from GeneWise GATTACTGTGGCATGGCGTGGCCGGTGCTAGCCCAGAGATTCAAGAACGGCCTCTTTTCTTCACACGCAGACGAGCATCGACTCAA ttgggctaggtctgtctatggtttttacgatttccatttgatctcattagGACTACTGTGGCATGGCATGGCCAGTGCTAGCCCAGAGATTCAAGAATGGCCTCTTTTCTTCACATGCAGATGAGCATCGACTCAAgtaaggcattttctgaagtgtgatatcctctcccaaagcctccagtgtga #### Ermp1_ID6319_11 --> 0 - 0 Original Alignment ATTACCTTCATCTACCTTGTGAACAGCACAAAGAAAACCATTCTGACTCTAATACTGGTGTGCGCGGTCACCTTCCTCCTTGTCTGCAGTGGAGCCTTTTTCCCATATAGTTCTAATCCCGAGAGTCCAAAGCCAAAGAGAGTGTTTCTTCAG ataaatacttatgcctatgggtttgattttctttccttttctggtttcagATTACCTTCATTTATCTCATAAATAGTACAAAAAGGATAATATTGACGCTAATATTGGTGTGCACAGTCACCCTCCAAATCGTCGGTAGTGGGTCCTTCTTTCCATATAGTTCTAATCCAGAGAGCCTGCGATCAAAACAAATCTTTCTTCAGgtatgtatgataacaaggaaggaaatctgatgcgtttaaggtgacagaaa Alignment from CESAR ATTACCTTCATCTACCTTGTGAACAGCACAAAGAAAACCATTCTGACTCTAATACTGGTGTGCGCGGTCACCTTCCTCCTTGTCTGCAGTGGAGCCTTTTTCCCATATAGTTCTAATCCCGAGAGTCCAAAGCCAAAGAGAGTGTTTCTTCAG ataaatacttatgcctatgggtttgattttctttccttttctggtttcagATTACCTTCATTTATCTCATAAATAGTACAAAAAGGATAATATTGACGCTAATATTGGTGTGCACAGTCACCCTCCAAATCGTCGGTAGTGGGTCCTTCTTTCCATATAGTTCTAATCCAGAGAGCCTGCGATCAAAACAAATCTTTCTTCAGgtatgtatgataacaaggaaggaaatctgatgcgtttaaggtgacagaaa Alignment from Spaln_aa2Genome ATTACCTTCATCTACCTTGTGAACAGCACAAAGAAAACCATTCTGACTCTAATACTGGTGTGCGCGGTCACCTTCCTCCTTGTCTGCAGTGGAGCCTTTTTCCCATATAGTTCTAATCCCGAGAGTCCAAAGCCAAAGAGAGTGTTTCTTCAG ataaatacttatgcctatgggtttgattttctttccttttctggtttcagATTACCTTCATTTATCTCATAAATAGTACAAAAAGGATAATATTGACGCTAATATTGGTGTGCACAGTCACCCTCCAAATCGTCGGTAGTGGGTCCTTCTTTCCATATAGTTCTAATCCAGAGAGCCTGCGATCAAAACAAATCTTTCTTCAGgtatgtatgataacaaggaaggaaatctgatgcgtttaaggtgacagaaa Alignment from Spaln_nt2Genome ATTACCTTCATCTACCTTGTGAACAGCACAAAGAAAACCATTCTGACTCTAATACTGGTGTGCGCGGTCACCTTCCTCCTTGTCTGCAGTGGAGCCTTTTTCCCATATAGTTCTAATCCCGAGAGTCCAAAGCCAAAGAGAGTGTTTCTTCAG ataaatacttatgcctatgggtttgattttctttccttttctggtttcagATTACCTTCATTTATCTCATAAATAGTACAAAAAGGATAATATTGACGCTAATATTGGTGTGCACAGTCACCCTCCAAATCGTCGGTAGTGGGTCCTTCTTTCCATATAGTTCTAATCCAGAGAGCCTGCGATCAAAACAAATCTTTCTTCAGgtatgtatgataacaaggaaggaaatctgatgcgtttaaggtgacagaaa Alignment from Pairagon ATTACCTTCATCTACCTTGTGAACAGCACAAAGAAAACCATTCTGACTCTAATACTGGTGTGCGCGGTCACCTTCCTCCTTGTCTGCAGTGGAGCCTTTTTCCCATATAGTTCTAATCCCGAGAGTC-----------CAAAGCCAAAGAGAGTGTTTCTTCAG ataaatacttatgcctatgggtttgattttctttccttttctggtttcagATTACCTTCATTTATCTCATAAATAGTACAAAAAGGATAATATTGACGCTAATATTGGTGTGCACAGTCACCCTCCAAATCGTCGGTAGTGGGTCCTTCTTTCCATATAGTTCTAATCCAGAGAGCCTGCGATCAAAACAAA-----------TCTTTCTTCAGgtatgtatgataacaaggaaggaaatctgatgcgtttaaggtgacagaaa Alignment from Exonerate_protein2genome ATTACCTTCATCTACCTTGTGAACAGCACAAAGAAAACCATTCTGACTCTAATACTGGTGTGCGCGGTCACCTTCCTCCTTGTCTGCAGTGGAGCCTTTTTCCCATATAGTTCTAATCCCGAGAGTCCAAAGCCAAAGAGAGTGTTTCTTCAG ataaatacttatgcctatgggtttgattttctttccttttctggtttcagATTACCTTCATTTATCTCATAAATAGTACAAAAAGGATAATATTGACGCTAATATTGGTGTGCACAGTCACCCTCCAAATCGTCGGTAGTGGGTCCTTCTTTCCATATAGTTCTAATCCAGAGAGCCTGCGATCAAAACAAATCTTTCTTCAGgtatgtatgataacaaggaaggaaatctgatgcgtttaaggtgacagaaa Alignment from Exonerate_coding2genome ATTACCTTCATCTACCTTGTGAACAGCACAAAGAAAACCATTCTGACTCTAATACTGGTGTGCGCGGTCACCTTCCTCCTTGTCTGCAGTGGAGCCTTTTTCCCATATAGTTCTAATCCCGAGAGTCCAAAGCCAAAGAGAGTGTTTCTTCAG ataaatacttatgcctatgggtttgattttctttccttttctggtttcagATTACCTTCATTTATCTCATAAATAGTACAAAAAGGATAATATTGACGCTAATATTGGTGTGCACAGTCACCCTCCAAATCGTCGGTAGTGGGTCCTTCTTTCCATATAGTTCTAATCCAGAGAGCCTGCGATCAAAACAAATCTTTCTTCAGgtatgtatgataacaaggaaggaaatctgatgcgtttaaggtgacagaaa Alignment from GeneWise ATTACCTTCATCTACCTTGTGAACAGCACAAAGAAAACCATTCTGACTCTAATACTGGTGTGCGCGGTCACCTTCCTCCTTGTCTGCAGTGGAGCCTTTTTCCCATATAGTTCTAATCCCGAGAGTCCAAAGCCAAAGAGAGTGTTTCTTCAG ataaatacttatgcctatgggtttgattttctttccttttctggtttcagATTACCTTCATTTATCTCATAAATAGTACAAAAAGGATAATATTGACGCTAATATTGGTGTGCACAGTCACCCTCCAAATCGTCGGTAGTGGGTCCTTCTTTCCATATAGTTCTAATCCAGAGAGCCTGCGATCAAAACAAATCTTTCTTCAGgtatgtatgataacaaggaaggaaatctgatgcgtttaaggtgacagaaa #### Ermp1_ID6322_8 --> 2 - 0 Original Alignment atGCTAATTACATGAGAGACTTCTTGTGTGGACTCGGGATCACATTCATTAGCTGGTTCACTAGCCTTGTTACCGTCCTCATTATAGCAGTGTTCATCTCTCTCATTGGACAGTCTCTCTCATGGTATAACTACTTTTATATTGCCGTTTGCCTGTATGGAACTGCAACAGTCGCCAAAATCATATTCATTCATACTCTTGCAAAAAGATTTTATTATATG ccctcattgggtctgtatattaaatgtttattctcttctctgcctcgcagatGCAAATTAC---AGAGATTTCTTGTGTGGGCAGGGTATCACCTTCATTAGCTGGTTCACTAGCCCTGTTACAGTTCTCACTATAGCAGTATTCATTTCCCTGATTGGACAATGT---CCTTGGTACAACTACTTCTATATCTCTGTTTGCCTGTATGGAACTGCAACAGTTACTAAGATCATATTCATTCATACTCTCACAAAGAGGTTTTATTACATGgtgagtatacagaacaagcttccctccaccccatttggctgcttacagaa Alignment from CESAR atGCTAATTACATGAGAGACTTCTTGTGTGGACTCGGGATCACATTCATTAGCTGGTTCACTAGCCTTGTTACCGTCCTCATTATAGCAGTGTTCATCTCTCTCATTGGACAGTCTCTCTCATGGTATAACTACTTTTATATTGCCGTTTGCCTGTATGGAACTGCAACAGTCGCCAAAATCATATTCATTCATACTCTTGCAAAAAGATTTTATTATATG ccctcattgggtctgtatattaaatgtttattctcttctctgcctcgcagatGCAAATTAC---AGAGATTTCTTGTGTGGGCAGGGTATCACCTTCATTAGCTGGTTCACTAGCCCTGTTACAGTTCTCACTATAGCAGTATTCATTTCCCTGATTGGACAATGT---CCTTGGTACAACTACTTCTATATCTCTGTTTGCCTGTATGGAACTGCAACAGTTACTAAGATCATATTCATTCATACTCTCACAAAGAGGTTTTATTACATGgtgagtatacagaacaagcttccctccaccccatttggctgcttacagaa Alignment from Spaln_aa2Genome ATGCTAATTACATGAGAGACTTCTTGTGTGGACTCGGGATCACATTCATTAGCTGGTTCACTAGCCTTGTTACCGTCCTCATTATAGCAGTGTTCATCTCTCTCATTGGACAGTCTCTCTCATGGTATAACTACTTTTATATTGCCGTTTGCCTGTATGGAACTGCAACAGTCGCCAAAATCATATTCATTCATACTCTTGCAAAAAGATTTTATTATATG ccctcattgggtctgtatattaaatgtttattctcttctctgcctcgcagATGCAAATTAC---AGAGATTTCTTGTGTGGGCAGGGTATCACCTTCATTAGCTGGTTCACTAGCCCTGTTACAGTTCTCACTATAGCAGTATTCATTTCCCTGATTGGACAATGT---CCTTGGTACAACTACTTCTATATCTCTGTTTGCCTGTATGGAACTGCAACAGTTACTAAGATCATATTCATTCATACTCTCACAAAGAGGTTTTATTACATGgtgagtatacagaacaagcttccctccaccccatttggctgcttacagaa Alignment from Spaln_nt2Genome ATGCTAATTACATGAGAGACTTCTTGTGTGGACTCGGGATCACATTCATTAGCTGGTTCACTAGCCTTGTTACCGTCCTCATTATAGCAGTGTTCATCTCTCTCATTGGACAGTCTCTCTCATGGTATAACTACTTTTATATTGCCGTTTGCCTGTATGGAACTGCAACAGTCGCCAAAATCATATTCATTCATACTCTTGCAAAAAGATTTTATTATATG ccctcattgggtctgtatattaaatgtttattctcttctctgcctcgcagATGCAAATTAC---AGAGATTTCTTGTGTGGGCAGGGTATCACCTTCATTAGCTGGTTCACTAGCCCTGTTACAGTTCTCACTATAGCAGTATTCATTTCCCTGATTGGACAATGTC---CTTGGTACAACTACTTCTATATCTCTGTTTGCCTGTATGGAACTGCAACAGTTACTAAGATCATATTCATTCATACTCTCACAAAGAGGTTTTATTACATGgtgagtatacagaacaagcttccctccaccccatttggctgcttacagaa Alignment from Pairagon ATGCTAATTACATGAGAGACTTCTTGTGTGGACTCGGGATCACATTCATTAGCTGGTTCACTAGCCTTGTTACCGTCCTCATTATAGCAGTGTTCATCTCTCTCATTGGACAGTCTCTCTCATGGTATAACTACTTTTATATTGCCGTTTGCCTGTATGGAACTGCAACAGTCGCCAAAATCATATTCATTCATACTCTTGCAAAAAGATTTTATTATATG ccctcattgggtctgtatattaaatgtttattctcttctctgcctcgcagATGCAAATTAC---AGAGATTTCTTGTGTGGGCAGGGTATCACCTTCATTAGCTGGTTCACTAGCCCTGTTACAGTTCTCACTATAGCAGTATTCATTTCCCTGATTGGACAATGTC---CTTGGTACAACTACTTCTATATCTCTGTTTGCCTGTATGGAACTGCAACAGTTACTAAGATCATATTCATTCATACTCTCACAAAGAGGTTTTATTACATGgtgagtatacagaacaagcttccctccaccccatttggctgcttacagaa Alignment from Exonerate_protein2genome ATGCTAATTACATGAGAGACTTCTTGTGTGGACTCGGGATCACATTCATTAGCTGGTTCACTAGCCTTGTTACCGTCCTCATTATAGCAGTGTTCATCTCTCTCATTGGACAGTCTCTCTCATGGTATAACTACTTTTATATTGCCGTTTGCCTGTATGGAACTGCAACAGTCGCCAAAATCATATTCATTCATACTCTTGCAAAAAGATTTTATTATATG ccctcattgggtctgtatattaaatgtttattctcttctctgcctcgcagATGCAAATTAC---AGAGATTTCTTGTGTGGGCAGGGTATCACCTTCATTAGCTGGTTCACTAGCCCTGTTACAGTTCTCACTATAGCAGTATTCATTTCCCTGATTGGACAA---TGTCCTTGGTACAACTACTTCTATATCTCTGTTTGCCTGTATGGAACTGCAACAGTTACTAAGATCATATTCATTCATACTCTCACAAAGAGGTTTTATTACATGgtgagtatacagaacaagcttccctccaccccatttggctgcttacagaa Alignment from Exonerate_coding2genome ATGCTAATTACATGAGAGACTTCTTGTGTGGACTCGGGATCACATTCATTAGCTGGTTCACTAGCCTTGTTACCGTCCTCATTATAGCAGTGTTCATCTCTCTCATTGGACAGTCTCTCTCATGGTATAACTACTTTTATATTGCCGTTTGCCTGTATGGAACTGCAACAGTCGCCAAAATCATATTCATTCATACTCTTGCAAAAAGATTTTATTATATG ccctcattgggtctgtatattaaatgtttattctcttctctgcctcgcagATGCAAATTAC---AGAGATTTCTTGTGTGGGCAGGGTATCACCTTCATTAGCTGGTTCACTAGCCCTGTTACAGTTCTCACTATAGCAGTATTCATTTCCCTGATTGGACAA---TGTCCTTGGTACAACTACTTCTATATCTCTGTTTGCCTGTATGGAACTGCAACAGTTACTAAGATCATATTCATTCATACTCTCACAAAGAGGTTTTATTACATGgtgagtatacagaacaagcttccctccaccccatttggctgcttacagaa Alignment from GeneWise ATGCTAATTACATGAGAGACTTCTTGTGTGGACTCGGGATCACATTCATTAGCTGGTTCACTAGCCTTGTTACCGTCCTCATTATAGCAGTGTTCATCTCTCTCATTGGACAGTCTCTCTCATGGTATAACTACTTTTATATTGCCGTTTGCCTGTATGGAACTGCAACAGTCGCCAAAATCATATTCATTCATACTCTTGCAAAAAGATTTTATTATATG ccctcattgggtctgtatattaaatgtttattctcttctctgcctcgcagATGCAAATTAC---AGAGATTTCTTGTGTGGGCAGGGTATCACCTTCATTAGCTGGTTCACTAGCCCTGTTACAGTTCTCACTATAGCAGTATTCATTTCCCTGATTGGACAA---TGTCCTTGGTACAACTACTTCTATATCTCTGTTTGCCTGTATGGAACTGCAACAGTTACTAAGATCATATTCATTCATACTCTCACAAAGAGGTTTTATTACATGgtgagtatacagaacaagcttccctccaccccatttggctgcttacagaa #### Exosc1_ID8336_3 --> 0 - 0 Original Alignment GTTCCCGTGGTGTCAGTGATGAGAGAAACAGAGTCCCAGTTGCTTCCAGATGTGGGAGCTGTCGTCACCTGTAAG cacttaggagtaagcatgtatcccaacaatccgatttccaccctacgcagGTGCCTGTGGTGTCAGTGATGAGAGAGACAGAGTCCCAACTGCTTCCAGATGTGGGAACTGTTATTACCTGTACCgtaatcacttcccagttgagctggcatccccaccacgacagtctcctggt Alignment from CESAR GTTCCCGTGGTGTCAGTGATGAGAGAAACAGAGTCCCAGTTGCTTCCAGATGTGGGAGCTGTCGTCACCTGTAAG cacttaggagtaagcatgtatcccaacaatccgatttccaccctacgcagGTGCCTGTGGTGTCAGTGATGAGAGAGACAGAGTCCCAACTGCTTCCAGATGTGGGAACTGTTATTACCTGTACCgtaatcacttcccagttgagctggcatccccaccacgacagtctcctggt Alignment from Spaln_aa2Genome GTTCCCGTGGTGTCAGTGATGAGAGAAACAGAGTCCCAGTTGCTTCCAGATGTGGGAGCTGTCGTCACCTGTAAG cacttaggagtaagcatgtatcccaacaatccgatttccaccctacgcagGTGCCTGTGGTGTCAGTGATGAGAGAGACAGAGTCCCAACTGCTTCCAGATGTGGGAACTGTTATTACCTGTACCgtaatcacttcccagttgagctggcatccccaccacgacagtctcctggt Alignment from Spaln_nt2Genome GTTCCCGTGGTGTCAGTGATGAGAGAAACAGAGTCCCAGTTGCTTCCAGATGTGGGAGCTGTCGTCACCTGTAAG cacttaggagtaagcatgtatcccaacaatccgatttccaccctacgcagGTGCCTGTGGTGTCAGTGATGAGAGAGACAGAGTCCCAACTGCTTCCAGATGTGGGAACTGTTATTACCTGTACCgtaatcacttcccagttgagctggcatccccaccacgacagtctcctggt Alignment from Pairagon GTTCCCGTGGTGTCAGTGATGAGAGAAACAGAGTCCCAGTTGCTTCCAGATGTGGGAGCTGTCGTCACCTGTAAG cacttaggagtaagcatgtatcccaacaatccgatttccaccctacgcagGTGCCTGTGGTGTCAGTGATGAGAGAGACAGAGTCCCAACTGCTTCCAGATGTGGGAACTGTTATTACCTGTACCgtaatcacttcccagttgagctggcatccccaccacgacagtctcctggt Alignment from Exonerate_protein2genome GTTCCCGTGGTGTCAGTGATGAGAGAAACAGAGTCCCAGTTGCTTCCAGATGTGGGAGCTGTCGTCACCTGTAAG cacttaggagtaagcatgtatcccaacaatccgatttccaccctacgcagGTGCCTGTGGTGTCAGTGATGAGAGAGACAGAGTCCCAACTGCTTCCAGATGTGGGAACTGTTATTACCTGTACCgtaatcacttcccagttgagctggcatccccaccacgacagtctcctggt Alignment from Exonerate_coding2genome GTTCCCGTGGTGTCAGTGATGAGAGAAACAGAGTCCCAGTTGCTTCCAGATGTGGGAGCTGTCGTCACCTGTAAG cacttaggagtaagcatgtatcccaacaatccgatttccaccctacgcagGTGCCTGTGGTGTCAGTGATGAGAGAGACAGAGTCCCAACTGCTTCCAGATGTGGGAACTGTTATTACCTGTACCgtaatcacttcccagttgagctggcatccccaccacgacagtctcctggt Alignment from GeneWise GTTCCCGTGGTGTCAGTGATGAGAGAAACAGAGTCCCAGTTGCTTCCAGATGTGGGAGCTGTCGTCACCTGTAAG cacttaggagtaagcatgtatcccaacaatccgatttccaccctacgcagGTGCCTGTGGTGTCAGTGATGAGAGAGACAGAGTCCCAACTGCTTCCAGATGTGGGAACTGTTATTACCTGTACCgtaatcacttcccagttgagctggcatccccaccacgacagtctcctggt #### Fads1_ID2696_10 --> 0 - 2 Original Alignment CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACca taatccctacactgatacatggaaatttctttgtcctctttccccgccagCTGCAGGCAACATGCAATGTCCACCAATCTGCCTTCAACAACTGGTTCAGTGGACATCTGAATTTCCAGATTGAACACcagtgcggtgatagtgcaaggaaacatgggatggcacagggtctaggtgagg Alignment from CESAR CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACca taatccctacactgatacatggaaatttctttgtcctctttccccgccagCTGCAGGCAACATGCAATGTCCACCAATCTGCCTTCAACAACTGGTTCAGTGGACATCTGAATTTCCAGATTGAACACcagtgcggtgatagtgcaaggaaacatgggatggcacagggtctaggtgagg Alignment from Spaln_aa2Genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA taatccctacactgatacatggaaatttctttgtcctctttccccgccagCTGCAGGCAACATGCAATGTCCACCAATCTGCCTTCAACAACTGGTTCAGTGGACATCTGAATTTCCAGATTGAACACCAgtgcggtgatagtgcaaggaaacatgggatggcacagggtctaggtgagg Alignment from Spaln_nt2Genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA taatccctacactgatacatggaaatttctttgtcctctttccccgccagCTGCAGGCAACATGCAATGTCCACCAATCTGCCTTCAACAACTGGTTCAGTGGACATCTGAATTTCCAGATTGAACACCAgtgcggtgatagtgcaaggaaacatgggatggcacagggtctaggtgagg Alignment from Pairagon CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA taatccctacactgatacatggaaatttctttgtcctctttccccgccagCTGCAGGCAACATGCAATGTCCACCAATCTGCCTTCAACAACTGGTTCAGTGGACATCTGAATTTCCAGATTGAACACCAgtgcggtgatagtgcaaggaaacatgggatggcacagggtctaggtgagg Alignment from Exonerate_protein2genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA taatccctacactgatacatggaaatttctttgtcctctttccccgccagCTGCAGGCAACATGCAATGTCCACCAATCTGCCTTCAACAACTGGTTCAGTGGACATCTGAATTTCCAGATTGAACACCAgtgcggtgatagtgcaaggaaacatgggatggcacagggtctaggtgagg Alignment from Exonerate_coding2genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCACCTCTTCCCCACCATGCCGCGGCAC taatccctacactgatacatggaaatttctttgtcctctttccccgccagCTGCAGGCAACATGCAATGTCCACCAATCTGCCTTCAACAACTGGTTCAGTGGACATCTGAATTTCCAGATTGAACACCAGTGCGGTGATAGTGCAAGGAAACATgggatggcacagggtctaggtgagg Alignment from GeneWise CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA taatccctacactgatacatggaaatttctttgtcctctttccccgccagCTGCAGGCAACATGCAATGTCCACCAATCTGCCTTCAACAACTGGTTCAGTGGACATCTGAATTTCCAGATTGAACACCAgtgcggtgatagtgcaaggaaacatgggatggcacagggtctaggtgagg #### Fam160b1_ID12352_3 --> 2 - 0 Original Alignment atGATAAAGCCCCAGTGACCGACACAAACATCCCATCCCACCTGGAACAGATGTTAGACATCCTGGTCCAAGAAGAAAATGAGCGGGAATCTGGAGAGACAGGGCCATGCATGGAATACCTGCTCCATCACAAGATCTTGGAAACGTTATACACCTTAGGGAAAGCCGAC acattgtgtgcactcgccctcaccatgctatatgcatgtatatatttcagatGATAAGGCCCCAGTAACAGACACCAACATATCATGCCATCTGGAACAGATGCTAGACATACTGGTCCAAGAGGAAAACGAG---CAATCTGGAGAGACTGGGCCTTGCATTGAATATTTACTCCATCACAAGATCTTGGAAACACTATACACTTTAGGAAAATCAGGTgtatgttcctcctcaccttggcattagtgtattagcataagaatgtcatg Alignment from CESAR atGATAAAGCCCCAGTGACCGACACAAACATCCCATCCCACCTGGAACAGATGTTAGACATCCTGGTCCAAGAAGAAAATGAGCGGGAATCTGGAGAGACAGGGCCATGCATGGAATACCTGCTCCATCACAAGATCTTGGAAACGTTATACACCTTAGGGAAAGCCGAC acattgtgtgcactcgccctcaccatgctatatgcatgtatatatttcagatGATAAGGCCCCAGTAACAGACACCAACATATCATGCCATCTGGAACAGATGCTAGACATACTGGTCCAAGAGGAAAACGAGCAA---TCTGGAGAGACTGGGCCTTGCATTGAATATTTACTCCATCACAAGATCTTGGAAACACTATACACTTTAGGAAAATCAGGTgtatgttcctcctcaccttggcattagtgtattagcataagaatgtcatg Alignment from Spaln_aa2Genome ATGATAAAGCCCCAGTGACCGACACAAACATCCCATCCCACCTGGAACAGATGTTAGACATCCTGGTCCAAGAAGAAAATGAGCGGGAATCTGGAGAGACAGGGCCATGCATGGAATACCTGCTCCATCACAAGATCTTGGAAACGTTATACACCTTAGGGAAAGCCGAC acattgtgtgcactcgccctcaccatgctatatgcatgtatatatttcagATGATAAGGCCCCAGTAACAGACACCAACATATCATGCCATCTGGAACAGATGCTAGACATACTGGTCCAAGAGGAAAACGAGCAA---TCTGGAGAGACTGGGCCTTGCATTGAATATTTACTCCATCACAAGATCTTGGAAACACTATACACTTTAGGAAAATCAGGTgtatgttcctcctcaccttggcattagtgtattagcataagaatgtcatg Alignment from Spaln_nt2Genome ATGATAAAGCCCCAGTGACCGACACAAACATCCCATCCCACCTGGAACAGATGTTAGACATCCTGGTCCAAGAAGAAAATGAGCGGGAATCTGGAGAGACAGGGCCATGCATGGAATACCTGCTCCATCACAAGATCTTGGAAACGTTATACACCTTAGGGAAAGCCGAC acattgtgtgcactcgccctcaccatgctatatgcatgtatatatttcagATGATAAGGCCCCAGTAACAGACACCAACATATCATGCCATCTGGAACAGATGCTAGACATACTGGTCCAAGAGGAAAACGAGC---AATCTGGAGAGACTGGGCCTTGCATTGAATATTTACTCCATCACAAGATCTTGGAAACACTATACACTTTAGGAAAATCAGGTgtatgttcctcctcaccttggcattagtgtattagcataagaatgtcatg Alignment from Pairagon ATGATAAAGCCCCAGTGACCGACACAAACATCCCATCCCACCTGGAACAGATGTTAGACATCCTGGTCCAAGAAGAAAATGAGCGGGAATCTGGAGAGACAGGGCCATGCATGGAATACCTGCTCCATCACAAGATCTTGGAAACGTTATACACCTTAGGGAAAGCCGAC acattgtgtgcactcgccctcaccatgctatatgcatgtatatatttcagATGATAAGGCCCCAGTAACAGACACCAACATATCATGCCATCTGGAACAGATGCTAGACATACTGGTCCAAGAGGAAAACGAGC---AATCTGGAGAGACTGGGCCTTGCATTGAATATTTACTCCATCACAAGATCTTGGAAACACTATACACTTTAGGAAAATCAGGTgtatgttcctcctcaccttggcattagtgtattagcataagaatgtcatg Alignment from Exonerate_protein2genome ATGATAAAGCCCCAGTGACCGACACAAACATCCCATCCCACCTGGAACAGATGTTAGACATCCTGGTCCAAGAAGAAAATGAGCGGGAATCTGGAGAGACAGGGCCATGCATGGAATACCTGCTCCATCACAAGATCTTGGAAACGTTATACACCTTAGGGAAAGCCGAC acattgtgtgcactcgccctcaccatgctatatgcatgtatatatttcagATGATAAGGCCCCAGTAACAGACACCAACATATCATGCCATCTGGAACAGATGCTAGACATACTGGTCCAAGAGGAAAACGAG---CAATCTGGAGAGACTGGGCCTTGCATTGAATATTTACTCCATCACAAGATCTTGGAAACACTATACACTTTAGGAAAATCAGGTgtatgttcctcctcaccttggcattagtgtattagcataagaatgtcatg Alignment from Exonerate_coding2genome ATGATAAAGCCCCAGTGACCGACACAAACATCCCATCCCACCTGGAACAGATGTTAGACATCCTGGTCCAAGAAGAAAATGAGCGGGAATCTGGAGAGACAGGGCCATGCATGGAATACCTGCTCCATCACAAGATCTTGGAAACGTTATACACCTTAGGGAAAGCCGAC acattgtgtgcactcgccctcaccatgctatatgcatgtatatatttcagATGATAAGGCCCCAGTAACAGACACCAACATATCATGCCATCTGGAACAGATGCTAGACATACTGGTCCAAGAGGAAAACGAG---CAATCTGGAGAGACTGGGCCTTGCATTGAATATTTACTCCATCACAAGATCTTGGAAACACTATACACTTTAGGAAAATCAGGTgtatgttcctcctcaccttggcattagtgtattagcataagaatgtcatg Alignment from GeneWise ATGATAAAGCCCCAGTGACCGACACAAACATCCCATCCCACCTGGAACAGATGTTAGACATCCTGGTCCAAGAAGAAAATGAGCGGGAATCTGGAGAGACAGGGCCATGCATGGAATACCTGCTCCATCACAAGATCTTGGAAACGTTATACACCTTAGGGAAAGCCGAC acattgtgtgcactcgccctcaccatgctatatgcatgtatatatttcagATGATAAGGCCCCAGTAACAGACACCAACATATCATGCCATCTGGAACAGATGCTAGACATACTGGTCCAAGAGGAAAACGAG---CAATCTGGAGAGACTGGGCCTTGCATTGAATATTTACTCCATCACAAGATCTTGGAAACACTATACACTTTAGGAAAATCAGGTgtatgttcctcctcaccttggcattagtgtattagcataagaatgtcatg #### Fam160b1_ID12360_11 --> 0 - 2 Original Alignment ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCgt tatgaacagacaattttcagaaggagttatcggcaccctctcccttccagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTTCAAAAGCCCAATGAGCACATCCTCTACAACCTGGTCTTAAGGAACCTGGAGGAGAGAAACTACACAGAAAACAAACCTTCCTGCCCAGAAGACAAAGATGTAGTAGAGAATGGACTAATAGCAGGAGCTgtgtatggagccctactgtatgccagaaatttgtaatcttacttactgtggt Alignment from CESAR ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCgt tatgaacagacaattttcagaaggagttatcggcaccctctcccttccagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTTCAAAAGCCCAATGAGCACATCCTCTACAACCTGGTCTTAAGGAACCTGGAGGAGAGAAACTACACAGAAAACAAACCTTCCTGCCCAGAAGACAAAGATGTAGTAGAGAATGGACTAATAGCAGGAGCTgtgtatggagccctactgtatgccagaaatttgtaatcttacttactgtggt Alignment from Spaln_aa2Genome ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT tatgaacagacaattttcagaaggagttatcggcaccctctcccttccagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTTCAAAAGCCCAATGAGCACATCCTCTACAACCTGGTCTTAAGGAACCTGGAGGAGAGAAACTACACAGAAAACAAACCTTCCTGCCCAGAAGACAAAGATGTAGTAGAGAATGGACTAATAGCAGGAGCTGTgtatggagccctactgtatgccagaaatttgtaatcttacttactgtggt Alignment from Spaln_nt2Genome ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT tatgaacagacaattttcagaaggagttatcggcaccctctcccttccagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTTCAAAAGCCCAATGAGCACATCCTCTACAACCTGGTCTTAAGGAACCTGGAGGAGAGAAACTACACAGAAAACAAACCTTCCTGCCCAGAAGACAAAGATGTAGTAGAGAATGGACTAATAGCAGGAGCTGTgtatggagccctactgtatgccagaaatttgtaatcttacttactgtggt Alignment from Pairagon ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT tatgaacagacaattttcagaaggagttatcggcaccctctcccttccagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTTCAAAAGCCCAATGAGCACATCCTCTACAACCTGGTCTTAAGGAACCTGGAGGAGAGAAACTACACAGAAAACAAACCTTCCTGCCCAGAAGACAAAGATGTAGTAGAGAATGGACTAATAGCAGGAGCTGTgtatggagccctactgtatgccagaaatttgtaatcttacttactgtggt Alignment from Exonerate_protein2genome ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT tatgaacagacaattttcagaaggagttatcggcaccctctcccttccagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTTCAAAAGCCCAATGAGCACATCCTCTACAACCTGGTCTTAAGGAACCTGGAGGAGAGAAACTACACAGAAAACAAACCTTCCTGCCCAGAAGACAAAGATGTAGTAGAGAATGGACTAATAGCAGGAGCTGTgtatggagccctactgtatgccagaaatttgtaatcttacttactgtggt Alignment from Exonerate_coding2genome ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT tatgaacagacaattttcagaaggagttatcggcaccctctcccttccagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTTCAAAAGCCCAATGAGCACATCCTCTACAACCTGGTCTTAAGGAACCTGGAGGAGAGAAACTACACAGAAAACAAACCTTCCTGCCCAGAAGACAAAGATGTAGTAGAGAATGGACTAATAGCAGGAGCTGTgtatggagccctactgtatgccagaaatttgtaatcttacttactgtggt Alignment from GeneWise ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT tatgaacagacaattttcagaaggagttatcggcaccctctcccttccagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTTCAAAAGCCCAATGAGCACATCCTCTACAACCTGGTCTTAAGGAACCTGGAGGAGAGAAACTACACAGAAAACAAACCTTCCTGCCCAGAAGACAAAGATGTAGTAGAGAATGGACTAATAGCAGGAGCTGTgtatggagccctactgtatgccagaaatttgtaatcttacttactgtggt #### Fam160b1_ID12363_14 --> 0 - 0 Original Alignment TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG tgaagtacttttcatacttactgtttggttgcttgttgtgtttcttccagTACCGAGATTTCTGTGCAATCTGCTCACGATGGGAATGGCCAGGAGCCCCTAAACCACTG------TGTGACCTAGAGGCAGCTTTCTTTGAAGGACATTTTTTAAAAGTTTTGTACAGGCGGATGGGAAGAAATCTTGATCAAgtaagtacttgaaagctcaacctccattgtcttcctgaaggtacaaaaaa Alignment from CESAR TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG tgaagtacttttcatacttactgtttggttgcttgttgtgtttcttccagTACCGAGATTTCTGTGCAATCTGCTCACGATGGGAATGGCCAGGAGCCCCTAAACCACTG------TGTGACCTAGAGGCAGCTTTCTTTGAAGGACATTTTTTAAAAGTTTTGTACAGGCGGATGGGAAGAAATCTTGATCAAgtaagtacttgaaagctcaacctccattgtcttcctgaaggtacaaaaaa Alignment from Spaln_aa2Genome TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG tgaagtacttttcatacttactgtttggttgcttgttgtgtttcttccagTACCGAGATTTCTGTGCAATCTGCTCACGATGGGAATGGCCAGGAGCCCCTAAACCACTG------TGTGACCTAGAGGCAGCTTTCTTTGAAGGACATTTTTTAAAAGTTTTGTACAGGCGGATGGGAAGAAATCTTGATCAAgtaagtacttgaaagctcaacctccattgtcttcctgaaggtacaaaaaa Alignment from Spaln_nt2Genome TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG tgaagtacttttcatacttactgtttggttgcttgttgtgtttcttccagTACCGAGATTTCTGTGCAATCTGCTCACGATGGGAATGGCCAGGAGCCCCTAAACCACTG------TGTGACCTAGAGGCAGCTTTCTTTGAAGGACATTTTTTAAAAGTTTTGTACAGGCGGATGGGAAGAAATCTTGATCAAgtaagtacttgaaagctcaacctccattgtcttcctgaaggtacaaaaaa Alignment from Pairagon TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACA---GAATGGGAAGAATTCTCGATCAG tgaagtacttttcatacttactgtttggttgcttgttgtgtttcttccagTACCGAGATTTCTGTGCAATCTGCTCACGATGGGAATGGCCAGGAGCCCCTAAACCACT------GTGTGACCTAGAGGCAGCTTTCTTTGAAGGACATTTTTTAAAAGTTTTGT---ACAGGCGGATGGGAAGAAATCTTGATCAAgtaagtacttgaaagctcaacctccattgtcttcctgaaggtacaaaaaa Alignment from Exonerate_protein2genome TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG tgaagtacttttcatacttactgtttggttgcttgttgtgtttcttccagTACCGAGATTTCTGTGCAATCTGCTCACGATGGGAATGGCCAGGAGCCCCTAAACCACTG------TGTGACCTAGAGGCAGCTTTCTTTGAAGGACATTTTTTAAAAGTTTTGTACAGGCGGATGGGAAGAAATCTTGATCAAgtaagtacttgaaagctcaacctccattgtcttcctgaaggtacaaaaaa Alignment from Exonerate_coding2genome tgaagtacttttcatacttactgtttggttgcttgttgtgtttcttccagtaccgagatttctgtgcaatctgctcacgatgggaatggccaggagcccctaaaccactgtgtgacctagaggcagctttctttgaaggacattttttaaaagttttgtacaggcggatgggaagaaatcttgatcaagtaagtacttgaaagctcaacctccattgtcttcctgaaggtacaaaaaa Alignment from GeneWise TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG tgaagtacttttcatacttactgtttggttgcttgttgtgtttcttccagTACCGAGATTTCTGTGCAATCTGCTCACGATGGGAATGGCCAGGAGCCCCTAAACCACTG------TGTGACCTAGAGGCAGCTTTCTTTGAAGGACATTTTTTAAAAGTTTTGTACAGGCGGATGGGAAGAAATCTTGATCAAgtaagtacttgaaagctcaacctccattgtcttcctgaaggtacaaaaaa #### Fam189a2_ID5247_10 --> 2 - 0 Original Alignment ctACCCCGGTGCTCAGCTGCGAAGCTGCAACGCAGACAGAAAGGAGGCTAGATCTCGCTACAGTGACTCTGAGGAGAGGCGCGAGGCCACGGGCATCAAGATGCAGACCCCGCTCTCTGATAGATTACAGGTCATACATAGACACGAAGCTGCTAGTGGCCAGGTTCCTGGAGCAGTCCTCCTGCAGCATGACTCCGGACATTCATGAACTTGTAGAGAACATAAAGTCTGTTCTGAAATCCGATGAGGGGCACATGGAAGAAGCCATCACGAGTGCCAGTTTCCTAGAGCAG ctagtttgactagtttgtttttcttaggcccatccatcctctctccccagcaACCCCAGTGTTAAGCTGTCAAGCTGCAACCAAGACAGAAAGAAGATTGGATCTTGCTACAGTGACTCTAAGAAGGGGTTCACGGCCACTGGCATCGAGATGCAGGCCTCGGTCACTTGTGGATTATAGATCTTACATTGACACAAAGCTACTTGTCGCTGGTTTTCTTCAGCAGTCATCTTGCAGCATGACTCCAGGTATCCATGAACTGGTGGAGAACATAAAATCTGTACTAAAATCTTATGAGGGGCATATGGAAGGAGCTATAACAAGTGCCAGCTTCTTGGAACAAgtatgtcaacacctatgcccctagtgatcaggcctggattgtggcctcta Alignment from CESAR ctACCCCGGTGCTCAGCTGCGAAGCTGCAACGCAGACAGAAAGGAGGCTAGATCTCGCTACAGTGACTCTGAGGAGAGGCGCGAGGCCACGGGCATCAAGATGCAGACCCCGCTCTCTGATAGATTACAGGTCATACATAGACACGAAGCTGCTAGTGGCCAGGTTCCTGGAGCAGTCCTCCTGCAGCATGACTCCGGACATTCATGAACTTGTAGAGAACATAAAGTCTGTTCTGAAATCCGATGAGGGGCACATGGAAGAAGCCATCACGAGTGCCAGTTTCCTAGAGCAG ctagtttgactagtttgtttttcttaggcccatccatcctctctccccagcaACCCCAGTGTTAAGCTGTCAAGCTGCAACCAAGACAGAAAGAAGATTGGATCTTGCTACAGTGACTCTAAGAAGGGGTTCACGGCCACTGGCATCGAGATGCAGGCCTCGGTCACTTGTGGATTATAGATCTTACATTGACACAAAGCTACTTGTCGCTGGTTTTCTTCAGCAGTCATCTTGCAGCATGACTCCAGGTATCCATGAACTGGTGGAGAACATAAAATCTGTACTAAAATCTTATGAGGGGCATATGGAAGGAGCTATAACAAGTGCCAGCTTCTTGGAACAAgtatgtcaacacctatgcccctagtgatcaggcctggattgtggcctcta Alignment from Spaln_aa2Genome CTACCCCGGTGCTCAGCTGCGAAGCTGCAACGCAGACAGAAAGGAGGCTAGATCTCGCTACAGTGACTCTGAGGAGAGGCGCGAGGCCACGGGCATCAAGATGCAGACCCCGCTCTCTGATAGATTACAGGTCATACATAGACACGAAGCTGCTAGTGGCCAGGTTCCTGGAGCAGTCCTCCTGCAGCATGACTCCGGACATTCATGAACTTGTAGAGAACATAAAGTCTGTTCTGAAATCCGATGAGGGGCACATGGAAGAAGCCATCACGAGTGCCAGTTTCCTAGAGCAG ctagtttgactagtttgtttttcttaggcccatccatcctctctccccagCAACCCCAGTGTTAAGCTGTCAAGCTGCAACCAAGACAGAAAGAAGATTGGATCTTGCTACAGTGACTCTAAGAAGGGGTTCACGGCCACTGGCATCGAGATGCAGGCCTCGGTCACTTGTGGATTATAGATCTTACATTGACACAAAGCTACTTGTCGCTGGTTTTCTTCAGCAGTCATCTTGCAGCATGACTCCAGGTATCCATGAACTGGTGGAGAACATAAAATCTGTACTAAAATCTTATGAGGGGCATATGGAAGGAGCTATAACAAGTGCCAGCTTCTTGGAACAAgtatgtcaacacctatgcccctagtgatcaggcctggattgtggcctcta Alignment from Spaln_nt2Genome CTACCCCGGTGCTCAGCTGCGAAGCTGCAACGCAGACAGAAAGGAGGCTAGATCTCGCTACAGTGACTCTGAGGAGAGGCGCGAGGCCACGGGCATCAAGATGCAGACCCCGCTCTCTGATAGATTACAGGTCATACATAGACACGAAGCTGCTAGTGGCCAGGTTCCTGGAGCAGTCCTCCTGCAGCATGACTCCGGACATTCATGAACTTGTAGAGAACATAAAGTCTGTTCTGAAATCCGATGAGGGGCACATGGAAGAAGCCATCACGAGTGCCAGTTTCCTAGAGCAG ctagtttgactagtttgtttttcttaggcccatccatcctctctccccagCAACCCCAGTGTTAAGCTGTCAAGCTGCAACCAAGACAGAAAGAAGATTGGATCTTGCTACAGTGACTCTAAGAAGGGGTTCACGGCCACTGGCATCGAGATGCAGGCCTCGGTCACTTGTGGATTATAGATCTTACATTGACACAAAGCTACTTGTCGCTGGTTTTCTTCAGCAGTCATCTTGCAGCATGACTCCAGGTATCCATGAACTGGTGGAGAACATAAAATCTGTACTAAAATCTTATGAGGGGCATATGGAAGGAGCTATAACAAGTGCCAGCTTCTTGGAACAAgtatgtcaacacctatgcccctagtgatcaggcctggattgtggcctcta Alignment from Pairagon CTACCCCGGTGCTCAGCTGCGAAGCTGCAACGCAGACAGAAAGGAGGCTAGATCTCGCTACAGTGACTCTGAGGAGAGGCGCGAGGCCACGGGCATCAAGATGCAGACCCCGCTCTCTGATAGATTACAGGTCATACATAGACACGAAGCTGCTAGTGGCCAGGTTCCTGGAGCAGTCCTCCTGCAGCATGACTCCGGACATTCATGAACTTGTAGAGAACATAAAGTCTGTTCTGAAATCCGATGAGGGGCACATGGAAGAAGCCATCACGAGTGCCAGTTTCCTAGAGCAG ctagtttgactagtttgtttttcttaggcccatccatcctctctccccagCAACCCCAGTGTTAAGCTGTCAAGCTGCAACCAAGACAGAAAGAAGATTGGATCTTGCTACAGTGACTCTAAGAAGGGGTTCACGGCCACTGGCATCGAGATGCAGGCCTCGGTCACTTGTGGATTATAGATCTTACATTGACACAAAGCTACTTGTCGCTGGTTTTCTTCAGCAGTCATCTTGCAGCATGACTCCAGGTATCCATGAACTGGTGGAGAACATAAAATCTGTACTAAAATCTTATGAGGGGCATATGGAAGGAGCTATAACAAGTGCCAGCTTCTTGGAACAAgtatgtcaacacctatgcccctagtgatcaggcctggattgtggcctcta Alignment from Exonerate_protein2genome CTACCCCGGTGCTCAGCTGCGAAGCTGCAACGCAGACAGAAAGGAGGCTAGATCTCGCTACAGTGACTCTGAGGAGAGGCGCGAGGCCACGGGCATCAAGATGCAGACCCCGCTCTCTGATAGATTACAGGTCATACATAGACACGAAGCTGCTAGTGGCCAGGTTCCTGGAGCAGTCCTCCTGCAGCATGACTCCGGACATTCATGAACTTGTAGAGAACATAAAGTCTGTTCTGAAATCCGATGAGGGGCACATGGAAGAAGCCATCACGAGTGCCAGTTTCCTAGAGCAG ctagtttgactagtttgtttttcttaggcccatccatcctctctccccagCAACCCCAGTGTTAAGCTGTCAAGCTGCAACCAAGACAGAAAGAAGATTGGATCTTGCTACAGTGACTCTAAGAAGGGGTTCACGGCCACTGGCATCGAGATGCAGGCCTCGGTCACTTGTGGATTATAGATCTTACATTGACACAAAGCTACTTGTCGCTGGTTTTCTTCAGCAGTCATCTTGCAGCATGACTCCAGGTATCCATGAACTGGTGGAGAACATAAAATCTGTACTAAAATCTTATGAGGGGCATATGGAAGGAGCTATAACAAGTGCCAGCTTCTTGGAACAAgtatgtcaacacctatgcccctagtgatcaggcctggattgtggcctcta Alignment from Exonerate_coding2genome CTACCCCGGTGCTCAGCTGCGAAGCTGCAACGCAGACAGAAAGGAGGCTAGATCTCGCTACAGTGACTCTGAGGAGAGGCGCGAGGCCACGGGCATCAAGATGCAGACCCCGCTCTCTGATAGATTACAGGTCATACATAGACACGAAGCTGCTAGTGGCCAGGTTCCTGGAGCAGTCCTCCTGCAGCATGACTCCGGACATTCATGAACTTGTAGAGAACATAAAGTCTGTTCTGAAATCCGATGAGGGGCACATGGAAGAAGCCATCACGAGTGCCAGTTTCCTAGAGCAG ctagtttgactagtttgtttttcttaggcccatccatcctctctccccagCAACCCCAGTGTTAAGCTGTCAAGCTGCAACCAAGACAGAAAGAAGATTGGATCTTGCTACAGTGACTCTAAGAAGGGGTTCACGGCCACTGGCATCGAGATGCAGGCCTCGGTCACTTGTGGATTATAGATCTTACATTGACACAAAGCTACTTGTCGCTGGTTTTCTTCAGCAGTCATCTTGCAGCATGACTCCAGGTATCCATGAACTGGTGGAGAACATAAAATCTGTACTAAAATCTTATGAGGGGCATATGGAAGGAGCTATAACAAGTGCCAGCTTCTTGGAACAAgtatgtcaacacctatgcccctagtgatcaggcctggattgtggcctcta Alignment from GeneWise CTACCCCGGTGCTCAGCTGCGAAGCTGCAACGCAGACAGAAAGGAGGCTAGATCTCGCTACAGTGACTCTGAGGAGAGGCGCGAGGCCACGGGCATCAAGATGCAGACCCCGCTCTCTGATAGATTACAGGTCATACATAGACACGAAGCTGCTAGTGGCCAGGTTCCTGGAGCAGTCCTCCTGCAGCATGACTCCGGACATTCATGAACTTGTAGAGAACATAAAGTCTGTTCTGAAATCCGATGAGGGGCACATGGAAGAAGCCATCACGAGTGCCAGTTTCCTAGAGCAG ctagtttgactagtttgtttttcttaggcccatccatcctctctccccagCAACCCCAGTGTTAAGCTGTCAAGCTGCAACCAAGACAGAAAGAAGATTGGATCTTGCTACAGTGACTCTAAGAAGGGGTTCACGGCCACTGGCATCGAGATGCAGGCCTCGGTCACTTGTGGATTATAGATCTTACATTGACACAAAGCTACTTGTCGCTGGTTTTCTTCAGCAGTCATCTTGCAGCATGACTCCAGGTATCCATGAACTGGTGGAGAACATAAAATCTGTACTAAAATCTTATGAGGGGCATATGGAAGGAGCTATAACAAGTGCCAGCTTCTTGGAACAAgtatgtcaacacctatgcccctagtgatcaggcctggattgtggcctcta #### Fam189a2_ID5255_5 --> 0 - 0 Original Alignment AAAGTCCTGTTTGCCCTGTGTGCCTTGAACGCCTTGACCACCACAGTGTGTTTGGTGGCTGCTGCCCTGCGCTACCTCCAGATCTTTGCCAGCAGAAGGCCATGTATT atcaaactgtttattacacatggttagaacatgtctctctgtcttcgtagAAGGTCCTGTTTGCCCTGTGTGCCTTGAATGCTTTGACTACCACTGTATGTTTGGTAGCTGCTGCCCTGCGATACCTCCAGATCTTTGCCAGTAGAAGGCCATGTATTgtgagctcctgaaactgttgtgtgaacaacctactagtcagttatgcagt Alignment from CESAR AAAGTCCTGTTTGCCCTGTGTGCCTTGAACGCCTTGACCACCACAGTGTGTTTGGTGGCTGCTGCCCTGCGCTACCTCCAGATCTTTGCCAGCAGAAGGCCATGTATT atcaaactgtttattacacatggttagaacatgtctctctgtcttcgtagAAGGTCCTGTTTGCCCTGTGTGCCTTGAATGCTTTGACTACCACTGTATGTTTGGTAGCTGCTGCCCTGCGATACCTCCAGATCTTTGCCAGTAGAAGGCCATGTATTgtgagctcctgaaactgttgtgtgaacaacctactagtcagttatgcagt Alignment from Spaln_aa2Genome AAAGTCCTGTTTGCCCTGTGTGCCTTGAACGCCTTGACCACCACAGTGTGTTTGGTGGCTGCTGCCCTGCGCTACCTCCAGATCTTTGCCAGCAGAAGGCCATGTATT atcaaactgtttattacacatggttagaacatgtctctctgtcttcgtagAAGGTCCTGTTTGCCCTGTGTGCCTTGAATGCTTTGACTACCACTGTATGTTTGGTAGCTGCTGCCCTGCGATACCTCCAGATCTTTGCCAGTAGAAGGCCATGTATTgtgagctcctgaaactgttgtgtgaacaacctactagtcagttatgcagt Alignment from Spaln_nt2Genome AAAGTCCTGTTTGCCCTGTGTGCCTTGAACGCCTTGACCACCACAGTGTGTTTGGTGGCTGCTGCCCTGCGCTACCTCCAGATCTTTGCCAGCAGAAGGCCATGTATT atcaaactgtttattacacatggttagaacatgtctctctgtcttcgtagAAGGTCCTGTTTGCCCTGTGTGCCTTGAATGCTTTGACTACCACTGTATGTTTGGTAGCTGCTGCCCTGCGATACCTCCAGATCTTTGCCAGTAGAAGGCCATGTATTgtgagctcctgaaactgttgtgtgaacaacctactagtcagttatgcagt Alignment from Pairagon AAAGTCCTGTTTGCCCTGTGTGCCTTGAACGCCTTGACCACCACAGTGTGTTTGGTGGCTGCTGCCCTGCGCTACCTCCAGATCTTTGCCAGCAGAAGGCCATGTATT atcaaactgtttattacacatggttagaacatgtctctctgtcttcgtagAAGGTCCTGTTTGCCCTGTGTGCCTTGAATGCTTTGACTACCACTGTATGTTTGGTAGCTGCTGCCCTGCGATACCTCCAGATCTTTGCCAGTAGAAGGCCATGTATTgtgagctcctgaaactgttgtgtgaacaacctactagtcagttatgcagt Alignment from Exonerate_protein2genome AAAGTCCTGTTTGCCCTGTGTGCCTTGAACGCCTTGACCACCACAGTGTGTTTGGTGGCTGCTGCCCTGCGCTACCTCCAGATCTTTGCCAGCAGAAGGCCATGTATT atcaaactgtttattacacatggttagaacatgtctctctgtcttcgtagAAGGTCCTGTTTGCCCTGTGTGCCTTGAATGCTTTGACTACCACTGTATGTTTGGTAGCTGCTGCCCTGCGATACCTCCAGATCTTTGCCAGTAGAAGGCCATGTATTgtgagctcctgaaactgttgtgtgaacaacctactagtcagttatgcagt Alignment from Exonerate_coding2genome AAAGTCCTGTTTGCCCTGTGTGCCTTGAACGCCTTGACCACCACAGTGTGTTTGGTGGCTGCTGCCCTGCGCTACCTCCAGATCTTTGCCAGCAGAAGGCCATGTATT atcaaactgtttattacacatggttagaacatgtctctctgtcttcgtagAAGGTCCTGTTTGCCCTGTGTGCCTTGAATGCTTTGACTACCACTGTATGTTTGGTAGCTGCTGCCCTGCGATACCTCCAGATCTTTGCCAGTAGAAGGCCATGTATTgtgagctcctgaaactgttgtgtgaacaacctactagtcagttatgcagt Alignment from GeneWise AAAGTCCTGTTTGCCCTGTGTGCCTTGAACGCCTTGACCACCACAGTGTGTTTGGTGGCTGCTGCCCTGCGCTACCTCCAGATCTTTGCCAGCAGAAGGCCATGTATT atcaaactgtttattacacatggttagaacatgtctctctgtcttcgtagAAGGTCCTGTTTGCCCTGTGTGCCTTGAATGCTTTGACTACCACTGTATGTTTGGTAGCTGCTGCCCTGCGATACCTCCAGATCTTTGCCAGTAGAAGGCCATGTATTgtgagctcctgaaactgttgtgtgaacaacctactagtcagttatgcagt #### Fam45a_ID13334_2 --> 2 - 0 Original Alignment aaAAGGACTCTAATGGAGAAGCCCTGTGGGTGTGGTGTTATCCTTCCACGACAGCCTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACATGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAG ttcattcggtaatatggttaaacacagtcctccctggccttgctccacagagAATGACTCTAATGAAGAGGCCCTCTGGGTGTGGTGCTATCCATCCACATCAGCATCAGTAAGGAATCTACTGCTCCGTGAATGTTGCCTAACTGATGAAAACAAACTTCTTCACCCTTTTGTCTTTGGCCAGTATTGGAGAACCTGGTTTTACGTTACAACAGTTGAAGTCCCAGATTCTTCAGTCTTGAAAAAGgtacagttggtcaagacaaggaagagctagactaaagttcacaggacgaa Alignment from CESAR aaAAGGACTCTAATGGAGAAGCCCTGTGGGTGTGGTGTTATCCTTCCACGACAGCCTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACATGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAG ttcattcggtaatatggttaaacacagtcctccctggccttgctccacagagAATGACTCTAATGAAGAGGCCCTCTGGGTGTGGTGCTATCCATCCACATCAGCATCAGTAAGGAATCTACTGCTCCGTGAATGTTGCCTAACTGATGAAAACAAACTTCTTCACCCTTTTGTCTTTGGCCAGTATTGGAGAACCTGGTTTTACGTTACAACAGTTGAAGTCCCAGATTCTTCAGTCTTGAAAAAGgtacagttggtcaagacaaggaagagctagactaaagttcacaggacgaa Alignment from Spaln_aa2Genome AAAAGGACTCTAATGGAGAAGCCCTGTGGGTGTGGTGTTATCCTTCCACGACAGCCTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACATGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAG ttcattcggtaatatggttaaacacagtcctccctggccttgctccacagAGAATGACTCTAATGAAGAGGCCCTCTGGGTGTGGTGCTATCCATCCACATCAGCATCAGTAAGGAATCTACTGCTCCGTGAATGTTGCCTAACTGATGAAAACAAACTTCTTCACCCTTTTGTCTTTGGCCAGTATTGGAGAACCTGGTTTTACGTTACAACAGTTGAAGTCCCAGATTCTTCAGTCTTGAAAAAGgtacagttggtcaagacaaggaagagctagactaaagttcacaggacgaa Alignment from Spaln_nt2Genome AAAAGGACTCTAATGGAGAAGCCCTGTGGGTGTGGTGTTATCCTTCCACGACAGCCTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACATGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAG ttcattcggtaatatggttaaacacagtcctccctggccttgctccacagAGAATGACTCTAATGAAGAGGCCCTCTGGGTGTGGTGCTATCCATCCACATCAGCATCAGTAAGGAATCTACTGCTCCGTGAATGTTGCCTAACTGATGAAAACAAACTTCTTCACCCTTTTGTCTTTGGCCAGTATTGGAGAACCTGGTTTTACGTTACAACAGTTGAAGTCCCAGATTCTTCAGTCTTGAAAAAGgtacagttggtcaagacaaggaagagctagactaaagttcacaggacgaa Alignment from Pairagon AAAAGGACTCTAATGGAGAAGCCCTGTGGGTGTGGTGTTATCCTTCCACGACAGCCTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACATGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAG ttcattcggtaatatggttaaacacagtcctccctggccttgctccacagAGAATGACTCTAATGAAGAGGCCCTCTGGGTGTGGTGCTATCCATCCACATCAGCATCAGTAAGGAATCTACTGCTCCGTGAATGTTGCCTAACTGATGAAAACAAACTTCTTCACCCTTTTGTCTTTGGCCAGTATTGGAGAACCTGGTTTTACGTTACAACAGTTGAAGTCCCAGATTCTTCAGTCTTGAAAAAGgtacagttggtcaagacaaggaagagctagactaaagttcacaggacgaa Alignment from Exonerate_protein2genome AAAAGGACTCTAATGGAGAAGCCCTGTGGGTGTGGTGTTATCCTTCCACGACAGCCTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACATGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAG ttcattcggtaatatggttaaacacagtcctccctggccttgctccacagAGAATGACTCTAATGAAGAGGCCCTCTGGGTGTGGTGCTATCCATCCACATCAGCATCAGTAAGGAATCTACTGCTCCGTGAATGTTGCCTAACTGATGAAAACAAACTTCTTCACCCTTTTGTCTTTGGCCAGTATTGGAGAACCTGGTTTTACGTTACAACAGTTGAAGTCCCAGATTCTTCAGTCTTGAAAAAGgtacagttggtcaagacaaggaagagctagactaaagttcacaggacgaa Alignment from Exonerate_coding2genome AAAAGGACTCTAATGGAGAAGCCCTGTGGGTGTGGTGTTATCCTTCCACGACAGCCTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACATGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAG ttcattcggtaatatggttaaacacagtcctccctggccttgctccacagAGAATGACTCTAATGAAGAGGCCCTCTGGGTGTGGTGCTATCCATCCACATCAGCATCAGTAAGGAATCTACTGCTCCGTGAATGTTGCCTAACTGATGAAAACAAACTTCTTCACCCTTTTGTCTTTGGCCAGTATTGGAGAACCTGGTTTTACGTTACAACAGTTGAAGTCCCAGATTCTTCAGTCTTGAAAAAGgtacagttggtcaagacaaggaagagctagactaaagttcacaggacgaa Alignment from GeneWise AAAAGGACTCTAATGGAGAAGCCCTGTGGGTGTGGTGTTATCCTTCCACGACAGCCTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACATGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAG ttcattcggtaatatggttaaacacagtcctccctggccttgctccacagAGAATGACTCTAATGAAGAGGCCCTCTGGGTGTGGTGCTATCCATCCACATCAGCATCAGTAAGGAATCTACTGCTCCGTGAATGTTGCCTAACTGATGAAAACAAACTTCTTCACCCTTTTGTCTTTGGCCAGTATTGGAGAACCTGGTTTTACGTTACAACAGTTGAAGTCCCAGATTCTTCAGTCTTGAAAAAGgtacagttggtcaagacaaggaagagctagactaaagttcacaggacgaa #### Fam45a_ID13338_6 --> 1 - 1 Original Alignment gACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAg tacaacaattttcctccagcaagtccttgtcttggggctgtgtcttacagtACACTACCTGCCTTAGTTTGGCATCAACAGGACTGGACCATCCTGCATTCTTACATGCACCTCCGTGCTGAAGAGTTAGAAGGCTTACAAATGTGCACAggtaccaagaaataccccattggtggagttatttgttattcgacttttttg Alignment from CESAR gACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAg tacaacaattttcctccagcaagtccttgtcttggggctgtgtcttacagtACACTACCTGCCTTAGTTTGGCATCAACAGGACTGGACCATCCTGCATTCTTACATGCACCTCCGTGCTGAAGAGTTAGAAGGCTTACAAATGTGCACAggtaccaagaaataccccattggtggagttatttgttattcgacttttttg Alignment from Spaln_aa2Genome GACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAG tacaacaattttcctccagcaagtccttgtcttggggctgtgtcttacagTACACTACCTGCCTTAGTTTGGCATCAACAGGACTGGACCATCCTGCATTCTTACATGCACCTCCGTGCTGAAGAGTTAGAAGGCTTACAAATGTGCACAGgtaccaagaaataccccattggtggagttatttgttattcgacttttttg Alignment from Spaln_nt2Genome GACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAG tacaacaattttcctccagcaagtccttgtcttggggctgtgtcttacagTACACTACCTGCCTTAGTTTGGCATCAACAGGACTGGACCATCCTGCATTCTTACATGCACCTCCGTGCTGAAGAGTTAGAAGGCTTACAAATGTGCACAGgtaccaagaaataccccattggtggagttatttgttattcgacttttttg Alignment from Pairagon GACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAG tacaacaattttcctccagcaagtccttgtcttggggctgtgtcttacagTACACTACCTGCCTTAGTTTGGCATCAACAGGACTGGACCATCCTGCATTCTTACATGCACCTCCGTGCTGAAGAGTTAGAAGGCTTACAAATGTGCACAGgtaccaagaaataccccattggtggagttatttgttattcgacttttttg Alignment from Exonerate_protein2genome GACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAG tacaacaattttcctccagcaagtccttgtcttggggctgtgtcttacagTACACTACCTGCCTTAGTTTGGCATCAACAGGACTGGACCATCCTGCATTCTTACATGCACCTCCGTGCTGAAGAGTTAGAAGGCTTACAAATGTGCACAGgtaccaagaaataccccattggtggagttatttgttattcgacttttttg Alignment from Exonerate_coding2genome GACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAG tacaacaattttcctccagcaagtccttgtcttggggctgtgtcttacagTACACTACCTGCCTTAGTTTGGCATCAACAGGACTGGACCATCCTGCATTCTTACATGCACCTCCGTGCTGAAGAGTTAGAAGGCTTACAAATGTGCACAGgtaccaagaaataccccattggtggagttatttgttattcgacttttttg Alignment from GeneWise GACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAG tacaacaattttcctccagcaagtccttgtcttggggctgtgtcttacagTACACTACCTGCCTTAGTTTGGCATCAACAGGACTGGACCATCCTGCATTCTTACATGCACCTCCGTGCTGAAGAGTTAGAAGGCTTACAAATGTGCACAGgtaccaagaaataccccattggtggagttatttgttattcgacttttttg #### Fas_ID6927_8 --> 0 - 1 Original Alignment GAAACCATACCAATGAATGCCTCAa actatatacatgaaaacccctcttcctcgtgctcatgtctgccctcctagGAAACAATACCC---AAGGCCTTGagtgaggtgctgcagggatcctgcttgctggaattggcttcaagtgtgatt Alignment from CESAR GAAACCATACCAATGAATGCCTCAa actatatacatgaaaacccctcttcctcgtgctcatgtctgccctcctagGAAACAATACCC---AAGGCCTTGagtgaggtgctgcagggatcctgcttgctggaattggcttcaagtgtgatt Alignment from Spaln_aa2Genome GAAACCATACCAATGAATGCCTCAA actatatacatgaaaacccctcttcctcgtgctcatgtctgccctcctagGAAACAATACCC---AAGGCCTTGAgtgaggtgctgcagggatcctgcttgctggaattggcttcaagtgtgatt Alignment from Spaln_nt2Genome GAAACCATACCAATGAATGCCTCAA actatatacatgaaaacccctcttcctcgtgctcatgtctgccctcctagGAAACAATACC---CAAGGCCTTGAgtgaggtgctgcagggatcctgcttgctggaattggcttcaagtgtgatt Alignment from Pairagon GAAACCATACCAATGAATGCCTCAA actatatacatgaaaacccctcttcctcgtgctcatgtctgccctcctagGAAACAATACCC---AAGGCCTTGAgtgaggtgctgcagggatcctgcttgctggaattggcttcaagtgtgatt Alignment from Exonerate_protein2genome actatatacatgaaaacccctcttcctcgtgctcatgtctgccctcctaggaaacaatacccaaggccttgagtgaggtgctgcagggatcctgcttgctggaattggcttcaagtgtgatt Alignment from Exonerate_coding2genome actatatacatgaaaacccctcttcctcgtgctcatgtctgccctcctaggaaacaatacccaaggccttgagtgaggtgctgcagggatcctgcttgctggaattggcttcaagtgtgatt Alignment from GeneWise actatatacatgaaaacccctcttcctcgtgctcatgtctgccctcctaggaaacaatacccaaggccttgagtgaggtgctgcagggatcctgcttgctggaattggcttcaagtgtgatt #### Fgf8_ID9566_3 --> 0 - 0 Original Alignment GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG gcctgcgcttggcagggagccaacatccaatgtctgtttattattttcagGGAGGCCCTGGAGGGGGGCCTGCGCTTGGCAGGGAGCCAACATCCCTGCTCCGAGCTGGTCGGGAACCTCAAGGGGTTTCCCAACAAgtacagagttggagagttggggaaggtttatccattttaggccctgggtt Alignment from CESAR GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG gcctgcgcttggcagggagccaacatccaatgtctgtttattattttcagGGAGGCCCTGGAGGGGGGCCTGCGCTTGGCAGGGAGCCAACATCCCTGCTCCGAGCTGGTCGGGAACCTCAAGGGGTTTCCCAACAAgtacagagttggagagttggggaaggtttatccattttaggccctgggtt Alignment from Spaln_aa2Genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG gcctgcgcttggcagggagccaacatccaatgtctgtttattattttcagGGAGGCCCTGGAGGGGGGCCTGCGCTTGGCAGGGAGCCAACATCCCTGCTCCGAGCTGGTCGGGAACCTCAAGGGGTTTCCCAACAAgtacagagttggagagttggggaaggtttatccattttaggccctgggtt Alignment from Spaln_nt2Genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG gcctgcgcttggcagggagccaacatccaatgtctgtttattattttcagGGAGGCCCTGGAGGGGGGCCTGCGCTTGGCAGGGAGCCAACATCCCTGCTCCGAGCTGGTCGGGAACCTCAAGGGGTTTCCCAACAAgtacagagttggagagttggggaaggtttatccattttaggccctgggtt Alignment from Pairagon GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG gcctgcgcttggcagggagccaacatccaatgtctgtttattattttcagGGAGGCCCTGGAGGGGGGCCTGCGCTTGGCAGGGAGCCAACATCCCTGCTCCGAGCTGGTCGGGAACCTCAAGGGGTTTCCCAACAAgtacagagttggagagttggggaaggtttatccattttaggccctgggtt Alignment from Exonerate_protein2genome GAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG gcctgcgcttggcagggagccaacatccaatgtctgtttattattttcagGGAGGCCCTGGAGGGGGGCCTGCGCTTGGCAGGGAGCCAACATCCCTGCTCCGAGCTGGTCGGGAACCTCAAGGGGTTTCCCAACAAgtacagagttggagagttggggaaggtttatccattttaggccctgggtt Alignment from Exonerate_coding2genome CAGGAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG gcctgcgcttggcagggagccaacatccaatgtctgtttattattttCAGGGAGGCCCTGGAGGGGGGCCTGCGCTTGGCAGGGAGCCAACATCCCTGCTCCGAGCTGGTCGGGAACCTCAAGGGGTTTCCCAACAAgtacagagttggagagttggggaaggtttatccattttaggccctgggtt Alignment from GeneWise CAGGAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG gcctgcgcttggcagggagccaacatccaatgtctgtttattattttCAGGGAGGCCCTGGAGGGGGGCCTGCGCTTGGCAGGGAGCCAACATCCCTGCTCCGAGCTGGTCGGGAACCTCAAGGGGTTTCCCAACAAgtacagagttggagagttggggaaggtttatccattttaggccctgggtt #### Fibp_ID1006_3 --> 1 - 0 Original Alignment gTACTACACCTTTGATGAGGCCTTTGTTCGGGAGGTCTTGGGCAAGAAGCTGTCCAAGGGTACCAAGAAAGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAG ttcgatgtccccaccggtgtatgcaactggagtgtgttgtatttttacaggTACTACACCTTTGATGAGGCCTTTGTTCGGGAAGTCTTGGGCGAGAAGCTGTCCAAGGGTACCAAGAAGGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAGgtaattaatccccttgacctgacacattgggcccactcatttgtcaagtg Alignment from CESAR gTACTACACCTTTGATGAGGCCTTTGTTCGGGAGGTCTTGGGCAAGAAGCTGTCCAAGGGTACCAAGAAAGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAG ttcgatgtccccaccggtgtatgcaactggagtgtgttgtatttttacaggTACTACACCTTTGATGAGGCCTTTGTTCGGGAAGTCTTGGGCGAGAAGCTGTCCAAGGGTACCAAGAAGGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAGgtaattaatccccttgacctgacacattgggcccactcatttgtcaagtg Alignment from Spaln_aa2Genome GTACTACACCTTTGATGAGGCCTTTGTTCGGGAGGTCTTGGGCAAGAAGCTGTCCAAGGGTACCAAGAAAGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAG ttcgatgtccccaccggtgtatgcaactggagtgtgttgtatttttacagGTACTACACCTTTGATGAGGCCTTTGTTCGGGAAGTCTTGGGCGAGAAGCTGTCCAAGGGTACCAAGAAGGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAGgtaattaatccccttgacctgacacattgggcccactcatttgtcaagtg Alignment from Spaln_nt2Genome GTACTACACCTTTGATGAGGCCTTTGTTCGGGAGGTCTTGGGCAAGAAGCTGTCCAAGGGTACCAAGAAAGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAG ttcgatgtccccaccggtgtatgcaactggagtgtgttgtatttttacagGTACTACACCTTTGATGAGGCCTTTGTTCGGGAAGTCTTGGGCGAGAAGCTGTCCAAGGGTACCAAGAAGGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAGgtaattaatccccttgacctgacacattgggcccactcatttgtcaagtg Alignment from Pairagon GTACTACACCTTTGATGAGGCCTTTGTTCGGGAGGTCTTGGGCAAGAAGCTGTCCAAGGGTACCAAGAAAGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAG ttcgatgtccccaccggtgtatgcaactggagtgtgttgtatttttacagGTACTACACCTTTGATGAGGCCTTTGTTCGGGAAGTCTTGGGCGAGAAGCTGTCCAAGGGTACCAAGAAGGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAGgtaattaatccccttgacctgacacattgggcccactcatttgtcaagtg Alignment from Exonerate_protein2genome GTACTACACCTTTGATGAGGCCTTTGTTCGGGAGGTCTTGGGCAAGAAGCTGTCCAAGGGTACCAAGAAAGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAG ttcgatgtccccaccggtgtatgcaactggagtgtgttgtatttttacagGTACTACACCTTTGATGAGGCCTTTGTTCGGGAAGTCTTGGGCGAGAAGCTGTCCAAGGGTACCAAGAAGGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAGgtaattaatccccttgacctgacacattgggcccactcatttgtcaagtg Alignment from Exonerate_coding2genome GTACTACACCTTTGATGAGGCCTTTGTTCGGGAGGTCTTGGGCAAGAAGCTGTCCAAGGGTACCAAGAAAGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAG ttcgatgtccccaccggtgtatgcaactggagtgtgttgtatttttacagGTACTACACCTTTGATGAGGCCTTTGTTCGGGAAGTCTTGGGCGAGAAGCTGTCCAAGGGTACCAAGAAGGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAGgtaattaatccccttgacctgacacattgggcccactcatttgtcaagtg Alignment from GeneWise GTACTACACCTTTGATGAGGCCTTTGTTCGGGAGGTCTTGGGCAAGAAGCTGTCCAAGGGTACCAAGAAAGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAG ttcgatgtccccaccggtgtatgcaactggagtgtgttgtatttttacagGTACTACACCTTTGATGAGGCCTTTGTTCGGGAAGTCTTGGGCGAGAAGCTGTCCAAGGGTACCAAGAAGGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAGgtaattaatccccttgacctgacacattgggcccactcatttgtcaagtg #### Fibp_ID1007_4 --> 0 - 2 Original Alignment TTTGACAACTTTAAACGAGTCTTCAAGGTGGTGGAAGAAATGCGGGGCTCCCTGGTGGACAACATCCAGCAGCACTTCCTCCTCTCTGACCGGTTAGCCag ttcacaggtaaaggtacatcagtagccatcttccttttttttattttcagTATGATAACTTTAAACGAATCTTCAAAGTTGTGGAAGAAATGAGGGGTTCCCTAGCTGACAATGTTCAGCAACACCTCCTCCTCTCTGACTGGTTAGCCaggtaagttcactactttactgagggtatagtcagcaaataccagctgctgc Alignment from CESAR TTTGACAACTTTAAACGAGTCTTCAAGGTGGTGGAAGAAATGCGGGGCTCCCTGGTGGACAACATCCAGCAGCACTTCCTCCTCTCTGACCGGTTAGCCag ttcacaggtaaaggtacatcagtagccatcttccttttttttattttcagTATGATAACTTTAAACGAATCTTCAAAGTTGTGGAAGAAATGAGGGGTTCCCTAGCTGACAATGTTCAGCAACACCTCCTCCTCTCTGACTGGTTAGCCaggtaagttcactactttactgagggtatagtcagcaaataccagctgctgc Alignment from Spaln_aa2Genome TTTGACAACTTTAAACGAGTCTTCAAGGTGGTGGAAGAAATGCGGGGCTCCCTGGTGGACAACATCCAGCAGCACTTCCTCCTCTCTGACCGGTTAGCCAG ttcacaggtaaaggtacatcagtagccatcttccttttttttattttcagTATGATAACTTTAAACGAATCTTCAAAGTTGTGGAAGAAATGAGGGGTTCCCTAGCTGACAATGTTCAGCAACACCTCCTCCTCTCTGACTGGTTAGCCAGgtaagttcactactttactgagggtatagtcagcaaataccagctgctgc Alignment from Spaln_nt2Genome TTTGACAACTTTAAACGAGTCTTCAAGGTGGTGGAAGAAATGCGGGGCTCCCTGGTGGACAACATCCAGCAGCACTTCCTCCTCTCTGACCGGTTAGCCAG ttcacaggtaaaggtacatcagtagccatcttccttttttttattttcagTATGATAACTTTAAACGAATCTTCAAAGTTGTGGAAGAAATGAGGGGTTCCCTAGCTGACAATGTTCAGCAACACCTCCTCCTCTCTGACTGGTTAGCCAGgtaagttcactactttactgagggtatagtcagcaaataccagctgctgc Alignment from Pairagon TTTGACAACTTTAAACGAGTCTTCAAGGTGGTGGAAGAAATGCGGGGCTCCCTGGTGGACAACATCCAGCAGCACTTCCTCCTCTCTGACCGGTTAGCCAG ttcacaggtaaaggtacatcagtagccatcttccttttttttattttcagTATGATAACTTTAAACGAATCTTCAAAGTTGTGGAAGAAATGAGGGGTTCCCTAGCTGACAATGTTCAGCAACACCTCCTCCTCTCTGACTGGTTAGCCAGgtaagttcactactttactgagggtatagtcagcaaataccagctgctgc Alignment from Exonerate_protein2genome TTTGACAACTTTAAACGAGTCTTCAAGGTGGTGGAAGAAATGCGGGGCTCCCTGGTGGACAACATCCAGCAGCACTTCCTCCTCTCTGACCGGTTAGCCAG ttcacaggtaaaggtacatcagtagccatcttccttttttttattttcagTATGATAACTTTAAACGAATCTTCAAAGTTGTGGAAGAAATGAGGGGTTCCCTAGCTGACAATGTTCAGCAACACCTCCTCCTCTCTGACTGGTTAGCCAGgtaagttcactactttactgagggtatagtcagcaaataccagctgctgc Alignment from Exonerate_coding2genome TTTGACAACTTTAAACGAGTCTTCAAGGTGGTGGAAGAAATGCGGGGCTCCCTGGTGGACAACATCCAGCAGCACTTCCTCCTCTCTGACCGGTTAGCCAG ttcacaggtaaaggtacatcagtagccatcttccttttttttattttcagTATGATAACTTTAAACGAATCTTCAAAGTTGTGGAAGAAATGAGGGGTTCCCTAGCTGACAATGTTCAGCAACACCTCCTCCTCTCTGACTGGTTAGCCAGgtaagttcactactttactgagggtatagtcagcaaataccagctgctgc Alignment from GeneWise TTTGACAACTTTAAACGAGTCTTCAAGGTGGTGGAAGAAATGCGGGGCTCCCTGGTGGACAACATCCAGCAGCACTTCCTCCTCTCTGACCGGTTAGCCAG ttcacaggtaaaggtacatcagtagccatcttccttttttttattttcagTATGATAACTTTAAACGAATCTTCAAAGTTGTGGAAGAAATGAGGGGTTCCCTAGCTGACAATGTTCAGCAACACCTCCTCCTCTCTGACTGGTTAGCCAGgtaagttcactactttactgagggtatagtcagcaaataccagctgctgc #### Fibp_ID1008_5 --> 1 - 1 Original Alignment gGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAg ttcaagcataagagagataaagatcatacttatgctgtttctcccgttagaGATTATGCATCTATTGTTTTCTTTGCCAATAATGACTTTGAAACCGGGAAAAAAAGGCTGCAGCACCTAAGCTTTGAGGCCTTTGCCTTCCGTGCAGAACTTATGATCCAGAACTGGACCCTTGGGACCATTGGTGAGGCTCCAACTGATCCAggtgagtgtaattgatgaggccccaactgatccaggtgcacaaactcttgc Alignment from CESAR gGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAg ttcaagcataagagagataaagatcatacttatgctgtttctcccgttagaGATTATGCATCTATTGTTTTCTTTGCCAATAATGACTTTGAAACCGGGAAAAAAAGGCTGCAGCACCTAAGCTTTGAGGCCTTTGCCTTCCGTGCAGAACTTATGATCCAGAACTGGACCCTTGGGACCATTGGTGAGGCTCCAACTGATCCAggtgagtgtaattgatgaggccccaactgatccaggtgcacaaactcttgc Alignment from Spaln_aa2Genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagcataagagagataaagatcatacttatgctgtttctcccgttagAGATTATGCATCTATTGTTTTCTTTGCCAATAATGACTTTGAAACCGGGAAAAAAAGGCTGCAGCACCTAAGCTTTGAGGCCTTTGCCTTCCGTGCAGAACTTATGATCCAGAACTGGACCCTTGGGACCATTGGTGAGGCTCCAACTGATCCAGgtgagtgtaattgatgaggccccaactgatccaggtgcacaaactcttgc Alignment from Spaln_nt2Genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagcataagagagataaagatcatacttatgctgtttctcccgttagAGATTATGCATCTATTGTTTTCTTTGCCAATAATGACTTTGAAACCGGGAAAAAAAGGCTGCAGCACCTAAGCTTTGAGGCCTTTGCCTTCCGTGCAGAACTTATGATCCAGAACTGGACCCTTGGGACCATTGGTGAGGCTCCAACTGATCCAGgtgagtgtaattgatgaggccccaactgatccaggtgcacaaactcttgc Alignment from Pairagon GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagcataagagagataaagatcatacttatgctgtttctcccgttagAGATTATGCATCTATTGTTTTCTTTGCCAATAATGACTTTGAAACCGGGAAAAAAAGGCTGCAGCACCTAAGCTTTGAGGCCTTTGCCTTCCGTGCAGAACTTATGATCCAGAACTGGACCCTTGGGACCATTGGTGAGGCTCCAACTGATCCAGgtgagtgtaattgatgaggccccaactgatccaggtgcacaaactcttgc Alignment from Exonerate_protein2genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagcataagagagataaagatcatacttatgctgtttctcccgttagAGATTATGCATCTATTGTTTTCTTTGCCAATAATGACTTTGAAACCGGGAAAAAAAGGCTGCAGCACCTAAGCTTTGAGGCCTTTGCCTTCCGTGCAGAACTTATGATCCAGAACTGGACCCTTGGGACCATTGGTGAGGCTCCAACTGATCCAGgtgagtgtaattgatgaggccccaactgatccaggtgcacaaactcttgc Alignment from Exonerate_coding2genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagcataagagagataaagatcatacttatgctgtttctcccgttagAGATTATGCATCTATTGTTTTCTTTGCCAATAATGACTTTGAAACCGGGAAAAAAAGGCTGCAGCACCTAAGCTTTGAGGCCTTTGCCTTCCGTGCAGAACTTATGATCCAGAACTGGACCCTTGGGACCATTGGTGAGGCTCCAACTGATCCAGgtgagtgtaattgatgaggccccaactgatccaggtgcacaaactcttgc Alignment from GeneWise GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATGATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagcataagagagataaagatcatacttatgctgtttctcccgttagAGATTATGCATCTATTGTTTTCTTTGCCAATAATGACTTTGAAACCGGGAAAAAAAGGCTGCAGCACCTAAGCTTTGAGGCCTTTGCCTTCCGTGCAGAACTTATGATCCAGAACTGGACCCTTGGGACCATTGGTGAGGCTCCAACTGATCCAGgtgagtgtaattgatgaggccccaactgatccaggtgcacaaactcttgc #### Fibp_ID1010_7 --> 1 - 0 Original Alignment cCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cagaacttactatactcagtctacagaaacttcctcctctctcctttcagcCTAGTCTGCACTGCCCTTCGTGGAAAACTTGGTGTCTTTTCTGAGATGGAATCCAACTTCAAGgtgagtttacttggcaatcataatcccttggttagatcactgaacacctg Alignment from CESAR cCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cagaacttactatactcagtctacagaaacttcctcctctctcctttcagcCTAGTCTGCACTGCCCTTCGTGGAAAACTTGGTGTCTTTTCTGAGATGGAATCCAACTTCAAGgtgagtttacttggcaatcataatcccttggttagatcactgaacacctg Alignment from Spaln_aa2Genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cagaacttactatactcagtctacagaaacttcctcctctctcctttcagCCTAGTCTGCACTGCCCTTCGTGGAAAACTTGGTGTCTTTTCTGAGATGGAATCCAACTTCAAGgtgagtttacttggcaatcataatcccttggttagatcactgaacacctg Alignment from Spaln_nt2Genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cagaacttactatactcagtctacagaaacttcctcctctctcctttcagCCTAGTCTGCACTGCCCTTCGTGGAAAACTTGGTGTCTTTTCTGAGATGGAATCCAACTTCAAGgtgagtttacttggcaatcataatcccttggttagatcactgaacacctg Alignment from Pairagon CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cagaacttactatactcagtctacagaaacttcctcctctctcctttcagCCTAGTCTGCACTGCCCTTCGTGGAAAACTTGGTGTCTTTTCTGAGATGGAATCCAACTTCAAGgtgagtttacttggcaatcataatcccttggttagatcactgaacacctg Alignment from Exonerate_protein2genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cagaacttactatactcagtctacagaaacttcctcctctctcctttcagCCTAGTCTGCACTGCCCTTCGTGGAAAACTTGGTGTCTTTTCTGAGATGGAATCCAACTTCAAGgtgagtttacttggcaatcataatcccttggttagatcactgaacacctg Alignment from Exonerate_coding2genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cagaacttactatactcagtctacagaaacttcctcctctctcctttcagCCTAGTCTGCACTGCCCTTCGTGGAAAACTTGGTGTCTTTTCTGAGATGGAATCCAACTTCAAGgtgagtttacttggcaatcataatcccttggttagatcactgaacacctg Alignment from GeneWise CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cagaacttactatactcagtctacagaaacttcctcctctctcctttcagCCTAGTCTGCACTGCCCTTCGTGGAAAACTTGGTGTCTTTTCTGAGATGGAATCCAACTTCAAGgtgagtttacttggcaatcataatcccttggttagatcactgaacacctg #### Fosl1_ID999_2 --> 0 - 0 Original Alignment AAGTTCCACCTTGTGCCAAGCATCGACAGCAGCAGCCAGGAACTGCACTGGATGGTGCAGCCTCATTTCCTGGGACCCACTGGCTATCCCCGACCTCTGGCCTATCCCCAGTACAGTCCCCCTCAGCCCCGGCCAGGAGTCATACGAGCCCTAGGGCCACCTCCGGGGGTGCGTCGCAGGCCCTGCGAGCAG gaagctgttgagcaaaatctgtgtattattttcttttctctaaaatgaagAAGTTCCATCTGGTACCGAGCATTGACAGCCGCAGCCAGGAACTACACTGGATGGTGCAGCCCCATTTTCTGGGACCCTCTGGTTACCCCCAACCTCTAGCATATCCCCAGTACAGTCCACCTCAACCCTGTCCAGGAGTTGTACGAGCCTTGGGACCACCTCCACCATTGCGTCGTAGGCACTGTGAGCAGgtaggtaagagtgatgtaatagcacttggtgggtatgatcttttactagg Alignment from CESAR AAGTTCCACCTTGTGCCAAGCATCGACAGCAGCAGCCAGGAACTGCACTGGATGGTGCAGCCTCATTTCCTGGGACCCACTGGCTATCCCCGACCTCTGGCCTATCCCCAGTACAGTCCCCCTCAGCCCCGGCCAGGAGTCATACGAGCCCTAGGGCCACCTCCGGGGGTGCGTCGCAGGCCCTGCGAGCAG gaagctgttgagcaaaatctgtgtattattttcttttctctaaaatgaagAAGTTCCATCTGGTACCGAGCATTGACAGCCGCAGCCAGGAACTACACTGGATGGTGCAGCCCCATTTTCTGGGACCCTCTGGTTACCCCCAACCTCTAGCATATCCCCAGTACAGTCCACCTCAACCCTGTCCAGGAGTTGTACGAGCCTTGGGACCACCTCCACCATTGCGTCGTAGGCACTGTGAGCAGgtaggtaagagtgatgtaatagcacttggtgggtatgatcttttactagg Alignment from Spaln_aa2Genome AAGTTCCACCTTGTGCCAAGCATCGACAGCAGCAGCCAGGAACTGCACTGGATGGTGCAGCCTCATTTCCTGGGACCCACTGGCTATCCCCGACCTCTGGCCTATCCCCAGTACAGTCCCCCTCAGCCCCGGCCAGGAGTCATACGAGCCCTAGGGCCACCTCCGGGGGTGCGTCGCAGGCCCTGCGAGCAG gaagctgttgagcaaaatctgtgtattattttcttttctctaaaatgaagAAGTTCCATCTGGTACCGAGCATTGACAGCCGCAGCCAGGAACTACACTGGATGGTGCAGCCCCATTTTCTGGGACCCTCTGGTTACCCCCAACCTCTAGCATATCCCCAGTACAGTCCACCTCAACCCTGTCCAGGAGTTGTACGAGCCTTGGGACCACCTCCACCATTGCGTCGTAGGCACTGTGAGCAGgtaggtaagagtgatgtaatagcacttggtgggtatgatcttttactagg Alignment from Spaln_nt2Genome AAGTTCCACCTTGTGCCAAGCATCGACAGCAGCAGCCAGGAACTGCACTGGATGGTGCAGCCTCATTTCCTGGGACCCACTGGCTATCCCCGACCTCTGGCCTATCCCCAGTACAGTCCCCCTCAGCCCCGGCCAGGAGTCATACGAGCCCTAGGGCCACCTCCGGGGGTGCGTCGCAGGCCCTGCGAGCAG gaagctgttgagcaaaatctgtgtattattttcttttctctaaaatgaagAAGTTCCATCTGGTACCGAGCATTGACAGCCGCAGCCAGGAACTACACTGGATGGTGCAGCCCCATTTTCTGGGACCCTCTGGTTACCCCCAACCTCTAGCATATCCCCAGTACAGTCCACCTCAACCCTGTCCAGGAGTTGTACGAGCCTTGGGACCACCTCCACCATTGCGTCGTAGGCACTGTGAGCAGgtaggtaagagtgatgtaatagcacttggtgggtatgatcttttactagg Alignment from Pairagon AAGTTCCACCTTGTGCCAAGCATCGACAGCAGCAGCCAGGAACTGCACTGGATGGTGCAGCCTCATTTCCTGGGACCCACTGGCTATCCCCGACCTCTGGCCTATCCCCAGTACAGTCCCCCTCAGCCCCGGCCAGGAGTCATACGAGCCCTAGGGCCACCTCCGGGGGTGCGTCGCAGGCCCTGCGAGCAG gaagctgttgagcaaaatctgtgtattattttcttttctctaaaatgaagAAGTTCCATCTGGTACCGAGCATTGACAGCCGCAGCCAGGAACTACACTGGATGGTGCAGCCCCATTTTCTGGGACCCTCTGGTTACCCCCAACCTCTAGCATATCCCCAGTACAGTCCACCTCAACCCTGTCCAGGAGTTGTACGAGCCTTGGGACCACCTCCACCATTGCGTCGTAGGCACTGTGAGCAGgtaggtaagagtgatgtaatagcacttggtgggtatgatcttttactagg Alignment from Exonerate_protein2genome AAGTTCCACCTTGTGCCAAGCATCGACAGCAGCAGCCAGGAACTGCACTGGATGGTGCAGCCTCATTTCCTGGGACCCACTGGCTATCCCCGACCTCTGGCCTATCCCCAGTACAGTCCCCCTCAGCCCCGGCCAGGAGTCATACGAGCCCTAGGGCCACCTCCGGGGGTGCGTCGCAGGCCCTGCGAGCAG gaagctgttgagcaaaatctgtgtattattttcttttctctaaaatgaagAAGTTCCATCTGGTACCGAGCATTGACAGCCGCAGCCAGGAACTACACTGGATGGTGCAGCCCCATTTTCTGGGACCCTCTGGTTACCCCCAACCTCTAGCATATCCCCAGTACAGTCCACCTCAACCCTGTCCAGGAGTTGTACGAGCCTTGGGACCACCTCCACCATTGCGTCGTAGGCACTGTGAGCAGgtaggtaagagtgatgtaatagcacttggtgggtatgatcttttactagg Alignment from Exonerate_coding2genome GCCCAGCAGCAGAAGTTCCACCTTGTGCCAAGCATCGACAGCAGCAGCCAGGAACTGCACTGGATGGTGCAGCCTCATTTCCTGGGACCCACTGGCTATCCCCGACCTCTGGCCTATCCCCAGTACAGTCCCCCTCAGCCCCGGCCAGGAGTCATACGAGCCCTAGGGCCACCTCCGGGGGTGCGTCGCAGGCCCTGCGAGCAG gaagctgttgagcaaaatctgtgtattattttcttttcTCTAAAATGAAGAAGTTCCATCTGGTACCGAGCATTGACAGCCGCAGCCAGGAACTACACTGGATGGTGCAGCCCCATTTTCTGGGACCCTCTGGTTACCCCCAACCTCTAGCATATCCCCAGTACAGTCCACCTCAACCCTGTCCAGGAGTTGTACGAGCCTTGGGACCACCTCCACCATTGCGTCGTAGGCACTGTGAGCAGgtaggtaagagtgatgtaatagcacttggtgggtatgatcttttactagg Alignment from GeneWise AAGTTCCACCTTGTGCCAAGCATCGACAGCAGCAGCCAGGAACTGCACTGGATGGTGCAGCCTCATTTCCTGGGACCCACTGGCTATCCCCGACCTCTGGCCTATCCCCAGTACAGTCCCCCTCAGCCCCGGCCAGGAGTCATACGAGCCCTAGGGCCACCTCCGGGGGTGCGTCGCAGGCCCTGCGAGCAG gaagctgttgagcaaaatctgtgtattattttcttttctctaaaatgaagAAGTTCCATCTGGTACCGAGCATTGACAGCCGCAGCCAGGAACTACACTGGATGGTGCAGCCCCATTTTCTGGGACCCTCTGGTTACCCCCAACCTCTAGCATATCCCCAGTACAGTCCACCTCAACCCTGTCCAGGAGTTGTACGAGCCTTGGGACCACCTCCACCATTGCGTCGTAGGCACTGTGAGCAGgtaggtaagagtgatgtaatagcacttggtgggtatgatcttttactagg #### Fra10ac1_ID7565_5 --> 1 - 2 Original Alignment gGAGAATGATAAGACAGATCTGGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGATGAAGCAGATATGACTtg atctggtgaaaccaaataagtctcagagagtttccctcttctttgttcaggGAGAATGATAAAACAGATCTTGATGTCATACATGAGAATCATCGGTTTCTTTGGAATGAGGAGGAGGAGGCAGATATGACAtggtaaagggactttataatgtcatggcaggaattgactctgctgctgtgaa Alignment from CESAR gGAGAATGATAAGACAGATCTGGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGATGAAGCAGATATGACTtg atctggtgaaaccaaataagtctcagagagtttccctcttctttgttcaggGAGAATGATAAAACAGATCTTGATGTCATACATGAGAATCATCGGTTTCTTTGGAATGAGGAGGAGGAGGCAGATATGACAtggtaaagggactttataatgtcatggcaggaattgactctgctgctgtgaa Alignment from Spaln_aa2Genome GGAGAATGATAAGACAGATCTGGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGATGAAGCAGATATGACTTG atctggtgaaaccaaataagtctcagagagtttccctcttctttgttcagGGAGAATGATAAAACAGATCTTGATGTCATACATGAGAATCATCGGTTTCTTTGGAATGAGGAGGAGGAGGCAGATATGACATGgtaaagggactttataatgtcatggcaggaattgactctgctgctgtgaa Alignment from Spaln_nt2Genome GGAGAATGATAAGACAGATCTGGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGATGAAGCAGATATGACTTG atctggtgaaaccaaataagtctcagagagtttccctcttctttgttcagGGAGAATGATAAAACAGATCTTGATGTCATACATGAGAATCATCGGTTTCTTTGGAATGAGGAGGAGGAGGCAGATATGACATGgtaaagggactttataatgtcatggcaggaattgactctgctgctgtgaa Alignment from Pairagon GGAGAATGATAAGACAGATCTGGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGATGAAGCAGATATGACTTG atctggtgaaaccaaataagtctcagagagtttccctcttctttgttcagGGAGAATGATAAAACAGATCTTGATGTCATACATGAGAATCATCGGTTTCTTTGGAATGAGGAGGAGGAGGCAGATATGACATGgtaaagggactttataatgtcatggcaggaattgactctgctgctgtgaa Alignment from Exonerate_protein2genome GGAGAATGATAAGACAGATCTGGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGATGAAGCAGATATGACTTG atctggtgaaaccaaataagtctcagagagtttccctcttctttgttcagGGAGAATGATAAAACAGATCTTGATGTCATACATGAGAATCATCGGTTTCTTTGGAATGAGGAGGAGGAGGCAGATATGACATGgtaaagggactttataatgtcatggcaggaattgactctgctgctgtgaa Alignment from Exonerate_coding2genome GGAGAATGATAAGACAGATCTGGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGATGAAGCAGATATGACTTG atctggtgaaaccaaataagtctcagagagtttccctcttctttgttcagGGAGAATGATAAAACAGATCTTGATGTCATACATGAGAATCATCGGTTTCTTTGGAATGAGGAGGAGGAGGCAGATATGACATGgtaaagggactttataatgtcatggcaggaattgactctgctgctgtgaa Alignment from GeneWise GGAGAATGATAAGACAGATCTGGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGATGAAGCAGATATGACTTG atctggtgaaaccaaataagtctcagagagtttccctcttctttgttcagGGAGAATGATAAAACAGATCTTGATGTCATACATGAGAATCATCGGTTTCTTTGGAATGAGGAGGAGGAGGCAGATATGACATGgtaaagggactttataatgtcatggcaggaattgactctgctgctgtgaa #### Frmd8_ID1281_7 --> 1 - 0 Original Alignment gTGTGCCTTCTTCCATGGCGAGGTTGACAAGCCAGCCCAGGGCTTCTTGCATCGAGGTGGGCGCAAACCAGTGACTGTGGCCATCAGTCTGGAGGGTGTGCACGTCATCGACAACAGGGAGAAG atagaagtttacacaggcagggtcaactagggctgcttttggttcctcaggTGTGCCTTCTTCCATAGTGAGGTGGACAAGCCAGCACAAGGCTTCCTTCATCGTGATGGCCGTAAACCAGTAGCTGTAGCGATTAGTCTGGAAGGTGTGCACATCATTGACAACAGGGAGAAGgtaacacccatcaacttgctagccttctaatggtccatcgaccaagatac Alignment from CESAR gTGTGCCTTCTTCCATGGCGAGGTTGACAAGCCAGCCCAGGGCTTCTTGCATCGAGGTGGGCGCAAACCAGTGACTGTGGCCATCAGTCTGGAGGGTGTGCACGTCATCGACAACAGGGAGAAG atagaagtttacacaggcagggtcaactagggctgcttttggttcctcaggTGTGCCTTCTTCCATAGTGAGGTGGACAAGCCAGCACAAGGCTTCCTTCATCGTGATGGCCGTAAACCAGTAGCTGTAGCGATTAGTCTGGAAGGTGTGCACATCATTGACAACAGGGAGAAGgtaacacccatcaacttgctagccttctaatggtccatcgaccaagatac Alignment from Spaln_aa2Genome GTGTGCCTTCTTCCATGGCGAGGTTGACAAGCCAGCCCAGGGCTTCTTGCATCGAGGTGGGCGCAAACCAGTGACTGTGGCCATCAGTCTGGAGGGTGTGCACGTCATCGACAACAGGGAGAAG atagaagtttacacaggcagggtcaactagggctgcttttggttcctcagGTGTGCCTTCTTCCATAGTGAGGTGGACAAGCCAGCACAAGGCTTCCTTCATCGTGATGGCCGTAAACCAGTAGCTGTAGCGATTAGTCTGGAAGGTGTGCACATCATTGACAACAGGGAGAAGgtaacacccatcaacttgctagccttctaatggtccatcgaccaagatac Alignment from Spaln_nt2Genome GTGTGCCTTCTTCCATGGCGAGGTTGACAAGCCAGCCCAGGGCTTCTTGCATCGAGGTGGGCGCAAACCAGTGACTGTGGCCATCAGTCTGGAGGGTGTGCACGTCATCGACAACAGGGAGAAG atagaagtttacacaggcagggtcaactagggctgcttttggttcctcagGTGTGCCTTCTTCCATAGTGAGGTGGACAAGCCAGCACAAGGCTTCCTTCATCGTGATGGCCGTAAACCAGTAGCTGTAGCGATTAGTCTGGAAGGTGTGCACATCATTGACAACAGGGAGAAGgtaacacccatcaacttgctagccttctaatggtccatcgaccaagatac Alignment from Pairagon GTGTGCCTTCTTCCATGGCGAGGTTGACAAGCCAGCCCAGGGCTTCTTGCATCGAGGTGGGCGCAAACCAGTGACTGTGGCCATCAGTCTGGAGGGTGTGCACGTCATCGACAACAGGGAGAAG atagaagtttacacaggcagggtcaactagggctgcttttggttcctcagGTGTGCCTTCTTCCATAGTGAGGTGGACAAGCCAGCACAAGGCTTCCTTCATCGTGATGGCCGTAAACCAGTAGCTGTAGCGATTAGTCTGGAAGGTGTGCACATCATTGACAACAGGGAGAAGgtaacacccatcaacttgctagccttctaatggtccatcgaccaagatac Alignment from Exonerate_protein2genome GTGTGCCTTCTTCCATGGCGAGGTTGACAAGCCAGCCCAGGGCTTCTTGCATCGAGGTGGGCGCAAACCAGTGACTGTGGCCATCAGTCTGGAGGGTGTGCACGTCATCGACAACAGGGAGAAG atagaagtttacacaggcagggtcaactagggctgcttttggttcctcagGTGTGCCTTCTTCCATAGTGAGGTGGACAAGCCAGCACAAGGCTTCCTTCATCGTGATGGCCGTAAACCAGTAGCTGTAGCGATTAGTCTGGAAGGTGTGCACATCATTGACAACAGGGAGAAGgtaacacccatcaacttgctagccttctaatggtccatcgaccaagatac Alignment from Exonerate_coding2genome GTGTGCCTTCTTCCATGGCGAGGTTGACAAGCCAGCCCAGGGCTTCTTGCATCGAGGTGGGCGCAAACCAGTGACTGTGGCCATCAGTCTGGAGGGTGTGCACGTCATCGACAACAGGGAGAAG atagaagtttacacaggcagggtcaactagggctgcttttggttcctcagGTGTGCCTTCTTCCATAGTGAGGTGGACAAGCCAGCACAAGGCTTCCTTCATCGTGATGGCCGTAAACCAGTAGCTGTAGCGATTAGTCTGGAAGGTGTGCACATCATTGACAACAGGGAGAAGgtaacacccatcaacttgctagccttctaatggtccatcgaccaagatac Alignment from GeneWise GTGTGCCTTCTTCCATGGCGAGGTTGACAAGCCAGCCCAGGGCTTCTTGCATCGAGGTGGGCGCAAACCAGTGACTGTGGCCATCAGTCTGGAGGGTGTGCACGTCATCGACAACAGGGAGAAG atagaagtttacacaggcagggtcaactagggctgcttttggttcctcagGTGTGCCTTCTTCCATAGTGAGGTGGACAAGCCAGCACAAGGCTTCCTTCATCGTGATGGCCGTAAACCAGTAGCTGTAGCGATTAGTCTGGAAGGTGTGCACATCATTGACAACAGGGAGAAGgtaacacccatcaacttgctagccttctaatggtccatcgaccaagatac #### Frmd8_ID1282_6 --> 1 - 2 Original Alignment aGAGAAGCTGGACTCCTTCCTCCCTGCCCACCTCTGCAAGCGAGGGCATGGCCTCTTTGCTGCCTTCCGGGGCCGTGGGGCCAAGACTGGGCCAGGTGAGCAAGGCCTGCTGAATGCCTACCGCCAGGTAAAGGAAGTGACAGGCAACAACAGTGAACGTGAGGCCACCTTGGGCTCCCACTACCGCGCATACCTCCTCAAGTGCCACGAGCTGCCCTTCTACgg cataatcacaagagccatcagaggcattttctccttctatctgctctgaggGAAAAACTGGATTGCTTCTTCCCAGCTCACCTCTGTAAAAGAGGGCACAGCCTTTTTGCTGCTTTCCAAGGACGGGGTACGAAAACAGGACCCGGTGAGCAAGGCCTGTTAAATGCCTATCACCAGGTAAAGGAAATTACAGGTAACAACAGCAAGCATGAGGCCACCTTGGGCTATCACTACCGAGCATATCTCCTCAAGTGCCACGGGCTCCCATTCTATgggtatgtgatcccccttagcacttttcaggtccatgttgtatgcttttata Alignment from CESAR aGAGAAGCTGGACTCCTTCCTCCCTGCCCACCTCTGCAAGCGAGGGCATGGCCTCTTTGCTGCCTTCCGGGGCCGTGGGGCCAAGACTGGGCCAGGTGAGCAAGGCCTGCTGAATGCCTACCGCCAGGTAAAGGAAGTGACAGGCAACAACAGTGAACGTGAGGCCACCTTGGGCTCCCACTACCGCGCATACCTCCTCAAGTGCCACGAGCTGCCCTTCTACgg cataatcacaagagccatcagaggcattttctccttctatctgctctgaggGAAAAACTGGATTGCTTCTTCCCAGCTCACCTCTGTAAAAGAGGGCACAGCCTTTTTGCTGCTTTCCAAGGACGGGGTACGAAAACAGGACCCGGTGAGCAAGGCCTGTTAAATGCCTATCACCAGGTAAAGGAAATTACAGGTAACAACAGCAAGCATGAGGCCACCTTGGGCTATCACTACCGAGCATATCTCCTCAAGTGCCACGGGCTCCCATTCTATgggtatgtgatcccccttagcacttttcaggtccatgttgtatgcttttata Alignment from Spaln_aa2Genome AGAGAAGCTGGACTCCTTCCTCCCTGCCCACCTCTGCAAGCGAGGGCATGGCCTCTTTGCTGCCTTCCGGGGCCGTGGGGCCAAGACTGGGCCAGGTGAGCAAGGCCTGCTGAATGCCTACCGCCAGGTAAAGGAAGTGACAGGCAACAACAGTGAACGTGAGGCCACCTTGGGCTCCCACTACCGCGCATACCTCCTCAAGTGCCACGAGCTGCCCTTCTACGG cataatcacaagagccatcagaggcattttctccttctatctgctctgagGGAAAAACTGGATTGCTTCTTCCCAGCTCACCTCTGTAAAAGAGGGCACAGCCTTTTTGCTGCTTTCCAAGGACGGGGTACGAAAACAGGACCCGGTGAGCAAGGCCTGTTAAATGCCTATCACCAGGTAAAGGAAATTACAGGTAACAACAGCAAGCATGAGGCCACCTTGGGCTATCACTACCGAGCATATCTCCTCAAGTGCCACGGGCTCCCATTCTATGGgtatgtgatcccccttagcacttttcaggtccatgttgtatgcttttata Alignment from Spaln_nt2Genome AGAGAAGCTGGACTCCTTCCTCCCTGCCCACCTCTGCAAGCGAGGGCATGGCCTCTTTGCTGCCTTCCGGGGCCGTGGGGCCAAGACTGGGCCAGGTGAGCAAGGCCTGCTGAATGCCTACCGCCAGGTAAAGGAAGTGACAGGCAACAACAGTGAACGTGAGGCCACCTTGGGCTCCCACTACCGCGCATACCTCCTCAAGTGCCACGAGCTGCCCTTCTACGG cataatcacaagagccatcagaggcattttctccttctatctgctctgagGGAAAAACTGGATTGCTTCTTCCCAGCTCACCTCTGTAAAAGAGGGCACAGCCTTTTTGCTGCTTTCCAAGGACGGGGTACGAAAACAGGACCCGGTGAGCAAGGCCTGTTAAATGCCTATCACCAGGTAAAGGAAATTACAGGTAACAACAGCAAGCATGAGGCCACCTTGGGCTATCACTACCGAGCATATCTCCTCAAGTGCCACGGGCTCCCATTCTATGGgtatgtgatcccccttagcacttttcaggtccatgttgtatgcttttata Alignment from Pairagon AGAGAAGCTGGACTCCTTCCTCCCTGCCCACCTCTGCAAGCGAGGGCATGGCCTCTTTGCTGCCTTCCGGGGCCGTGGGGCCAAGACTGGGCCAGGTGAGCAAGGCCTGCTGAATGCCTACCGCCAGGTAAAGGAAGTGACAGGCAACAACAGTGAACGTGAGGCCACCTTGGGCTCCCACTACCGCGCATACCTCCTCAAGTGCCACGAGCTGCCCTTCTACGG cataatcacaagagccatcagaggcattttctccttctatctgctctgagGGAAAAACTGGATTGCTTCTTCCCAGCTCACCTCTGTAAAAGAGGGCACAGCCTTTTTGCTGCTTTCCAAGGACGGGGTACGAAAACAGGACCCGGTGAGCAAGGCCTGTTAAATGCCTATCACCAGGTAAAGGAAATTACAGGTAACAACAGCAAGCATGAGGCCACCTTGGGCTATCACTACCGAGCATATCTCCTCAAGTGCCACGGGCTCCCATTCTATGGgtatgtgatcccccttagcacttttcaggtccatgttgtatgcttttata Alignment from Exonerate_protein2genome AGAGAAGCTGGACTCCTTCCTCCCTGCCCACCTCTGCAAGCGAGGGCATGGCCTCTTTGCTGCCTTCCGGGGCCGTGGGGCCAAGACTGGGCCAGGTGAGCAAGGCCTGCTGAATGCCTACCGCCAGGTAAAGGAAGTGACAGGCAACAACAGTGAACGTGAGGCCACCTTGGGCTCCCACTACCGCGCATACCTCCTCAAGTGCCACGAGCTGCCCTTCTACGG cataatcacaagagccatcagaggcattttctccttctatctgctctgagGGAAAAACTGGATTGCTTCTTCCCAGCTCACCTCTGTAAAAGAGGGCACAGCCTTTTTGCTGCTTTCCAAGGACGGGGTACGAAAACAGGACCCGGTGAGCAAGGCCTGTTAAATGCCTATCACCAGGTAAAGGAAATTACAGGTAACAACAGCAAGCATGAGGCCACCTTGGGCTATCACTACCGAGCATATCTCCTCAAGTGCCACGGGCTCCCATTCTATGGgtatgtgatcccccttagcacttttcaggtccatgttgtatgcttttata Alignment from Exonerate_coding2genome AGAGAAGCTGGACTCCTTCCTCCCTGCCCACCTCTGCAAGCGAGGGCATGGCCTCTTTGCTGCCTTCCGGGGCCGTGGGGCCAAGACTGGGCCAGGTGAGCAAGGCCTGCTGAATGCCTACCGCCAGGTAAAGGAAGTGACAGGCAACAACAGTGAACGTGAGGCCACCTTGGGCTCCCACTACCGCGCATACCTCCTCAAGTGCCACGAGCTGCCCTTCTACGG cataatcacaagagccatcagaggcattttctccttctatctgctctgagGGAAAAACTGGATTGCTTCTTCCCAGCTCACCTCTGTAAAAGAGGGCACAGCCTTTTTGCTGCTTTCCAAGGACGGGGTACGAAAACAGGACCCGGTGAGCAAGGCCTGTTAAATGCCTATCACCAGGTAAAGGAAATTACAGGTAACAACAGCAAGCATGAGGCCACCTTGGGCTATCACTACCGAGCATATCTCCTCAAGTGCCACGGGCTCCCATTCTATGGgtatgtgatcccccttagcacttttcaggtccatgttgtatgcttttata Alignment from GeneWise AGAGAAGCTGGACTCCTTCCTCCCTGCCCACCTCTGCAAGCGAGGGCATGGCCTCTTTGCTGCCTTCCGGGGCCGTGGGGCCAAGACTGGGCCAGGTGAGCAAGGCCTGCTGAATGCCTACCGCCAGGTAAAGGAAGTGACAGGCAACAACAGTGAACGTGAGGCCACCTTGGGCTCCCACTACCGCGCATACCTCCTCAAGTGCCACGAGCTGCCCTTCTACGG cataatcacaagagccatcagaggcattttctccttctatctgctctgagGGAAAAACTGGATTGCTTCTTCCCAGCTCACCTCTGTAAAAGAGGGCACAGCCTTTTTGCTGCTTTCCAAGGACGGGGTACGAAAACAGGACCCGGTGAGCAAGGCCTGTTAAATGCCTATCACCAGGTAAAGGAAATTACAGGTAACAACAGCAAGCATGAGGCCACCTTGGGCTATCACTACCGAGCATATCTCCTCAAGTGCCACGGGCTCCCATTCTATGGgtatgtgatcccccttagcacttttcaggtccatgttgtatgcttttata #### Ganab_ID2463_2 --> 1 - 2 Original Alignment gTCTTGGTTAAGTTTGGTGCTGGCATACTTAGGGGTCTGTCTGGGGATTACACTTGCTGTGGATAGAAGCAACTTTAAGACCTGTGATGAGAGTTCCTTTTGCaa gcaggctcctacctattctaaaaattatttcatgtttctttactttccaggTCTTGGCTAAGTTTGGTCCTGGCGTACTTGGGGGTTTGTCTAGGGATTAAGCTACCTGTGGACCAAAGCAACTTTAAGACATGTGATGAAAGTTCATTTTGCaagtaagtagtatgcaaaaagataacaatacatataacataggtgcggggcg Alignment from CESAR gTCTTGGTTAAGTTTGGTGCTGGCATACTTAGGGGTCTGTCTGGGGATTACACTTGCTGTGGATAGAAGCAACTTTAAGACCTGTGATGAGAGTTCCTTTTGCaa gcaggctcctacctattctaaaaattatttcatgtttctttactttccaggTCTTGGCTAAGTTTGGTCCTGGCGTACTTGGGGGTTTGTCTAGGGATTAAGCTACCTGTGGACCAAAGCAACTTTAAGACATGTGATGAAAGTTCATTTTGCaagtaagtagtatgcaaaaagataacaatacatataacataggtgcggggcg Alignment from Spaln_aa2Genome GTCTTGGTTAAGTTTGGTGCTGGCATACTTAGGGGTCTGTCTGGGGATTACACTTGCTGTGGATAGAAGCAACTTTAAGACCTGTGATGAGAGTTCCTTTTGCAA gcaggctcctacctattctaaaaattatttcatgtttctttactttccagGTCTTGGCTAAGTTTGGTCCTGGCGTACTTGGGGGTTTGTCTAGGGATTAAGCTACCTGTGGACCAAAGCAACTTTAAGACATGTGATGAAAGTTCATTTTGCAAgtaagtagtatgcaaaaagataacaatacatataacataggtgcggggcg Alignment from Spaln_nt2Genome GTCTTGGTTAAGTTTGGTGCTGGCATACTTAGGGGTCTGTCTGGGGATTACACTTGCTGTGGATAGAAGCAACTTTAAGACCTGTGATGAGAGTTCCTTTTGCAA gcaggctcctacctattctaaaaattatttcatgtttctttactttccagGTCTTGGCTAAGTTTGGTCCTGGCGTACTTGGGGGTTTGTCTAGGGATTAAGCTACCTGTGGACCAAAGCAACTTTAAGACATGTGATGAAAGTTCATTTTGCAAgtaagtagtatgcaaaaagataacaatacatataacataggtgcggggcg Alignment from Pairagon GGTCTTGGTTAAGTTTGGTGCTGGCATACTTAGGGGTCTGTCTGGGGATTACACTTGCTGTGGATAGAAGCAACTTTAAGACCTGTGATGAGAGTTCCTTTTGCAA gcaggctcctacctattctaaaaattatttcatgtttctttactttccaGGTCTTGGCTAAGTTTGGTCCTGGCGTACTTGGGGGTTTGTCTAGGGATTAAGCTACCTGTGGACCAAAGCAACTTTAAGACATGTGATGAAAGTTCATTTTGCAAgtaagtagtatgcaaaaagataacaatacatataacataggtgcggggcg Alignment from Exonerate_protein2genome CGGTCTTGGTTAAGTTTGGTGCTGGCATACTTAGGGGTCTGTCTGGGGATTACACTTGCTGTGGATAGAAGCAACTTTAAGACCTGTGATGAGAGTTCCTTTTGCAA gcaggctcctacctattctaaaaattatttcatgtttctttactttccAGGTCTTGGCTAAGTTTGGTCCTGGCGTACTTGGGGGTTTGTCTAGGGATTAAGCTACCTGTGGACCAAAGCAACTTTAAGACATGTGATGAAAGTTCATTTTGCAAgtaagtagtatgcaaaaagataacaatacatataacataggtgcggggcg Alignment from Exonerate_coding2genome gcaggctcctacctattctaaaaattatttcatgtttctttactttccaggtcttggctaagtttggtcctggcgtacttgggggtttgtctagggattaagctacctgtggaccaaagcaactttaagacatgtgatgaaagttcattttgcaagtaagtagtatgcaaaaagataacaatacatataacataggtgcggggcg Alignment from GeneWise CGGTCTTGGTTAAGTTTGGTGCTGGCATACTTAGGGGTCTGTCTGGGGATTACACTTGCTGTGGATAGAAGCAACTTTAAGACCTGTGATGAGAGTTCCTTTTGCAA gcaggctcctacctattctaaaaattatttcatgtttctttactttccAGGTCTTGGCTAAGTTTGGTCCTGGCGTACTTGGGGGTTTGTCTAGGGATTAAGCTACCTGTGGACCAAAGCAACTTTAAGACATGTGATGAAAGTTCATTTTGCAAgtaagtagtatgcaaaaagataacaatacatataacataggtgcggggcg #### Ganab_ID2464_3 --> 1 - 0 Original Alignment aCGGCAGCGAAGCATTCGGCCAGGCCTCTCTCCTTACCGTGCCTTGCTGGACACTCTGCAGCTTGGTCCTGATGCTCTTACAGTCCATCTGATCCATGAAGTCACCAAG accatctggagggttttcattgttgactctctctttacccctttgaacaggCAACAGCGCAGCATTCAATCTGGCCTCTCCCCCTATCGGGACTTACTTGATACCCTACAGCTTGGCCCTGATGCCCTTACAGTCCAACTAATTCATGAAGTCACTAAAgtaaggcagtttacacatcattttctgtaggtgacaattgttagttatga Alignment from CESAR aCGGCAGCGAAGCATTCGGCCAGGCCTCTCTCCTTACCGTGCCTTGCTGGACACTCTGCAGCTTGGTCCTGATGCTCTTACAGTCCATCTGATCCATGAAGTCACCAAG accatctggagggttttcattgttgactctctctttacccctttgaacaggCAACAGCGCAGCATTCAATCTGGCCTCTCCCCCTATCGGGACTTACTTGATACCCTACAGCTTGGCCCTGATGCCCTTACAGTCCAACTAATTCATGAAGTCACTAAAgtaaggcagtttacacatcattttctgtaggtgacaattgttagttatga Alignment from Spaln_aa2Genome ACGGCAGCGAAGCATTCGGCCAGGCCTCTCTCCTTACCGTGCCTTGCTGGACACTCTGCAGCTTGGTCCTGATGCTCTTACAGTCCATCTGATCCATGAAGTCACCAAG accatctggagggttttcattgttgactctctctttacccctttgaacagGCAACAGCGCAGCATTCAATCTGGCCTCTCCCCCTATCGGGACTTACTTGATACCCTACAGCTTGGCCCTGATGCCCTTACAGTCCAACTAATTCATGAAGTCACTAAAgtaaggcagtttacacatcattttctgtaggtgacaattgttagttatga Alignment from Spaln_nt2Genome ACGGCAGCGAAGCATTCGGCCAGGCCTCTCTCCTTACCGTGCCTTGCTGGACACTCTGCAGCTTGGTCCTGATGCTCTTACAGTCCATCTGATCCATGAAGTCACCAAG accatctggagggttttcattgttgactctctctttacccctttgaacagGCAACAGCGCAGCATTCAATCTGGCCTCTCCCCCTATCGGGACTTACTTGATACCCTACAGCTTGGCCCTGATGCCCTTACAGTCCAACTAATTCATGAAGTCACTAAAgtaaggcagtttacacatcattttctgtaggtgacaattgttagttatga Alignment from Pairagon ACGGCAGCGAAGCATTCGGCCAGGCCTCTCTCCTTACCGTGCCTTGCTGGACACTCTGCAGCTTGGTCCTGATGCTCTTACAGTCCATCTGATCCATGAAGTCACCAAG accatctggagggttttcattgttgactctctctttacccctttgaacagGCAACAGCGCAGCATTCAATCTGGCCTCTCCCCCTATCGGGACTTACTTGATACCCTACAGCTTGGCCCTGATGCCCTTACAGTCCAACTAATTCATGAAGTCACTAAAgtaaggcagtttacacatcattttctgtaggtgacaattgttagttatga Alignment from Exonerate_protein2genome ACGGCAGCGAAGCATTCGGCCAGGCCTCTCTCCTTACCGTGCCTTGCTGGACACTCTGCAGCTTGGTCCTGATGCTCTTACAGTCCATCTGATCCATGAAGTCACCAAG accatctggagggttttcattgttgactctctctttacccctttgaacagGCAACAGCGCAGCATTCAATCTGGCCTCTCCCCCTATCGGGACTTACTTGATACCCTACAGCTTGGCCCTGATGCCCTTACAGTCCAACTAATTCATGAAGTCACTAAAgtaaggcagtttacacatcattttctgtaggtgacaattgttagttatga Alignment from Exonerate_coding2genome accatctggagggttttcattgttgactctctctttacccctttgaacaggcaacagcgcagcattcaatctggcctctccccctatcgggacttacttgataccctacagcttggccctgatgcccttacagtccaactaattcatgaagtcactaaagtaaggcagtttacacatcattttctgtaggtgacaattgttagttatga Alignment from GeneWise ACGGCAGCGAAGCATTCGGCCAGGCCTCTCTCCTTACCGTGCCTTGCTGGACACTCTGCAGCTTGGTCCTGATGCTCTTACAGTCCATCTGATCCATGAAGTCACCAAG accatctggagggttttcattgttgactctctctttacccctttgaacagGCAACAGCGCAGCATTCAATCTGGCCTCTCCCCCTATCGGGACTTACTTGATACCCTACAGCTTGGCCCTGATGCCCTTACAGTCCAACTAATTCATGAAGTCACTAAAgtaaggcagtttacacatcattttctgtaggtgacaattgttagttatga #### Ganab_ID2466_5 --> 1 - 2 Original Alignment gCTTTCAGTCTCTGGCCGTGATGACAACAGTGTGGAGCTAACAGTGGCTGAGGGACCCTACAAAATCATTTTGACAGCACAGCCATTCCGCCTTGACCTGCTAGAAGATCGAAGCCTCCTGCTCAGTGTCAATGCCCGAGGACTTATGGCCTTTGAGCACCAGAGGGCCCCCAGGGTCcc aaaactagtagtattgcactcacggcccttttttttttaaatgtgtgcaggCTTTCAGTCTCTGGCCATGGTGATAAGTCTGTTGAAATAACAGTTGCTGAGGGCCCCTATACAGTCATCTTGACTGCACAACCATTTCGTCTTGATTTGTTAGAAGATCAAACCCTATTCCTCAGTGTCAAGCTCCAAGGGCTCATGGCTTTAGAACACCAGAGAGACCCCAGAGTGccgtaagcgcagtatcagtgttttaagggaccttactgtataggttgcgaat Alignment from CESAR gCTTTCAGTCTCTGGCCGTGATGACAACAGTGTGGAGCTAACAGTGGCTGAGGGACCCTACAAAATCATTTTGACAGCACAGCCATTCCGCCTTGACCTGCTAGAAGATCGAAGCCTCCTGCTCAGTGTCAATGCCCGAGGACTTATGGCCTTTGAGCACCAGAGGGCCCCCAGGGTCcc aaaactagtagtattgcactcacggcccttttttttttaaatgtgtgcaggCTTTCAGTCTCTGGCCATGGTGATAAGTCTGTTGAAATAACAGTTGCTGAGGGCCCCTATACAGTCATCTTGACTGCACAACCATTTCGTCTTGATTTGTTAGAAGATCAAACCCTATTCCTCAGTGTCAAGCTCCAAGGGCTCATGGCTTTAGAACACCAGAGAGACCCCAGAGTGccgtaagcgcagtatcagtgttttaagggaccttactgtataggttgcgaat Alignment from Spaln_aa2Genome GCTTTCAGTCTCTGGCCGTGATGACAACAGTGTGGAGCTAACAGTGGCTGAGGGACCCTACAAAATCATTTTGACAGCACAGCCATTCCGCCTTGACCTGCTAGAAGATCGAAGCCTCCTGCTCAGTGTCAATGCCCGAGGACTTATGGCCTTTGAGCACCAGAGGGCCCCCAGGGTCCC aaaactagtagtattgcactcacggcccttttttttttaaatgtgtgcagGCTTTCAGTCTCTGGCCATGGTGATAAGTCTGTTGAAATAACAGTTGCTGAGGGCCCCTATACAGTCATCTTGACTGCACAACCATTTCGTCTTGATTTGTTAGAAGATCAAACCCTATTCCTCAGTGTCAAGCTCCAAGGGCTCATGGCTTTAGAACACCAGAGAGACCCCAGAGTGCCgtaagcgcagtatcagtgttttaagggaccttactgtataggttgcgaat Alignment from Spaln_nt2Genome GCTTTCAGTCTCTGGCCGTGATGACAACAGTGTGGAGCTAACAGTGGCTGAGGGACCCTACAAAATCATTTTGACAGCACAGCCATTCCGCCTTGACCTGCTAGAAGATCGAAGCCTCCTGCTCAGTGTCAATGCCCGAGGACTTATGGCCTTTGAGCACCAGAGGGCCCCCAGGGTCCC aaaactagtagtattgcactcacggcccttttttttttaaatgtgtgcagGCTTTCAGTCTCTGGCCATGGTGATAAGTCTGTTGAAATAACAGTTGCTGAGGGCCCCTATACAGTCATCTTGACTGCACAACCATTTCGTCTTGATTTGTTAGAAGATCAAACCCTATTCCTCAGTGTCAAGCTCCAAGGGCTCATGGCTTTAGAACACCAGAGAGACCCCAGAGTGCCgtaagcgcagtatcagtgttttaagggaccttactgtataggttgcgaat Alignment from Pairagon GCTTTCAGTCTCTGGCCGTGATGACAACAGTGTGGAGCTAACAGTGGCTGAGGGACCCTACAAAATCATTTTGACAGCACAGCCATTCCGCCTTGACCTGCTAGAAGATCGAAGCCTCCTGCTCAGTGTCAATGCCCGAGGACTTATGGCCTTTGAGCACCAGAGGGCCCCCAGGGTCCC aaaactagtagtattgcactcacggcccttttttttttaaatgtgtgcagGCTTTCAGTCTCTGGCCATGGTGATAAGTCTGTTGAAATAACAGTTGCTGAGGGCCCCTATACAGTCATCTTGACTGCACAACCATTTCGTCTTGATTTGTTAGAAGATCAAACCCTATTCCTCAGTGTCAAGCTCCAAGGGCTCATGGCTTTAGAACACCAGAGAGACCCCAGAGTGCCgtaagcgcagtatcagtgttttaagggaccttactgtataggttgcgaat Alignment from Exonerate_protein2genome GCTTTCAGTCTCTGGCCGTGATGACAACAGTGTGGAGCTAACAGTGGCTGAGGGACCCTACAAAATCATTTTGACAGCACAGCCATTCCGCCTTGACCTGCTAGAAGATCGAAGCCTCCTGCTCAGTGTCAATGCCCGAGGACTTATGGCCTTTGAGCACCAGAGGGCCCCCAGGGTCCC aaaactagtagtattgcactcacggcccttttttttttaaatgtgtgcagGCTTTCAGTCTCTGGCCATGGTGATAAGTCTGTTGAAATAACAGTTGCTGAGGGCCCCTATACAGTCATCTTGACTGCACAACCATTTCGTCTTGATTTGTTAGAAGATCAAACCCTATTCCTCAGTGTCAAGCTCCAAGGGCTCATGGCTTTAGAACACCAGAGAGACCCCAGAGTGCCgtaagcgcagtatcagtgttttaagggaccttactgtataggttgcgaat Alignment from Exonerate_coding2genome ACAGCTAGGCTTTCAGTCTCTGGCCGTGATGACAACAGTGTGGAGCTAACAGTGGCTGAGGGACCCTACAAAATCATTTTGACAGCACAGCCATTCCGCCTTGACCTGCTAGAAGATCGAAGCCTCCTGCTCAGTGTCAATGCCCGAGGACTTATGGCCTTTGAGCACCAGAGGGCCCCCAGGGTCCC aaaactagtagtattgcactcacggcccttttttttttaaatGTGTGCAGGCTTTCAGTCTCTGGCCATGGTGATAAGTCTGTTGAAATAACAGTTGCTGAGGGCCCCTATACAGTCATCTTGACTGCACAACCATTTCGTCTTGATTTGTTAGAAGATCAAACCCTATTCCTCAGTGTCAAGCTCCAAGGGCTCATGGCTTTAGAACACCAGAGAGACCCCAGAGTGCCgtaagcgcagtatcagtgttttaagggaccttactgtataggttgcgaat Alignment from GeneWise GCTTTCAGTCTCTGGCCGTGATGACAACAGTGTGGAGCTAACAGTGGCTGAGGGACCCTACAAAATCATTTTGACAGCACAGCCATTCCGCCTTGACCTGCTAGAAGATCGAAGCCTCCTGCTCAGTGTCAATGCCCGAGGACTTATGGCCTTTGAGCACCAGAGGGCCCCCAGGGTCCC aaaactagtagtattgcactcacggcccttttttttttaaatgtgtgcagGCTTTCAGTCTCTGGCCATGGTGATAAGTCTGTTGAAATAACAGTTGCTGAGGGCCCCTATACAGTCATCTTGACTGCACAACCATTTCGTCTTGATTTGTTAGAAGATCAAACCCTATTCCTCAGTGTCAAGCTCCAAGGGCTCATGGCTTTAGAACACCAGAGAGACCCCAGAGTGCCgtaagcgcagtatcagtgttttaagggaccttactgtataggttgcgaat #### Ganab_ID2472_11 --> 0 - 1 Original Alignment ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAg ttgagatctgccttagacatctcatcatttcttctctcccccttcctcagACACTATTTGGTAAGATGCTTGATTACTTGCAAGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGTCCTCCAGTTTTTGATGTCTTTAGACAGTATGCTAGTCTCACAggtatcaatgatttttcttcctcacaaattaagtgacaaagcatttatact Alignment from CESAR ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAg ttgagatctgccttagacatctcatcatttcttctctcccccttcctcagACACTATTTGGTAAGATGCTTGATTACTTGCAAGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGTCCTCCAGTTTTTGATGTCTTTAGACAGTATGCTAGTCTCACAggtatcaatgatttttcttcctcacaaattaagtgacaaagcatttatact Alignment from Spaln_aa2Genome ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG ttgagatctgccttagacatctcatcatttcttctctcccccttcctcagACACTATTTGGTAAGATGCTTGATTACTTGCAAGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGTCCTCCAGTTTTTGATGTCTTTAGACAGTATGCTAGTCTCACAGgtatcaatgatttttcttcctcacaaattaagtgacaaagcatttatact Alignment from Spaln_nt2Genome ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG ttgagatctgccttagacatctcatcatttcttctctcccccttcctcagACACTATTTGGTAAGATGCTTGATTACTTGCAAGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGTCCTCCAGTTTTTGATGTCTTTAGACAGTATGCTAGTCTCACAGgtatcaatgatttttcttcctcacaaattaagtgacaaagcatttatact Alignment from Pairagon ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG ttgagatctgccttagacatctcatcatttcttctctcccccttcctcagACACTATTTGGTAAGATGCTTGATTACTTGCAAGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGTCCTCCAGTTTTTGATGTCTTTAGACAGTATGCTAGTCTCACAGgtatcaatgatttttcttcctcacaaattaagtgacaaagcatttatact Alignment from Exonerate_protein2genome GGGAAGACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG ttgagatctgccttagacatctcatcatttcttctctcccccttCCTCAGACACTATTTGGTAAGATGCTTGATTACTTGCAAGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGTCCTCCAGTTTTTGATGTCTTTAGACAGTATGCTAGTCTCACAGgtatcaatgatttttcttcctcacaaattaagtgacaaagcatttatact Alignment from Exonerate_coding2genome GGGAAGACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG ttgagatctgccttagacatctcatcatttcttctctcccccttCCTCAGACACTATTTGGTAAGATGCTTGATTACTTGCAAGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGTCCTCCAGTTTTTGATGTCTTTAGACAGTATGCTAGTCTCACAGgtatcaatgatttttcttcctcacaaattaagtgacaaagcatttatact Alignment from GeneWise -----------------------------------------GCTGGGAAGACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG TTGAGATCTGCCTTAGACATCTCATCATTTCTTCTCTCCCCCTTCCTCAGACACTATTTGGTAAGATGCTTGATTACTTGCAAGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGTCCTCCAGTTTTTGATGTCTTTAGACAGTATGCTAGTCTCACAGgtatcaatgatttttcttcctcacaaattaagtgacaaagcatttatact #### Ganab_ID2474_13 --> 0 - 1 Original Alignment CTGGTGGCCATTGTGGACCCCCACATCAAGGTA------GACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAg gc gaaatggcattgtaatctgaacaattcccccccttacttcccccttccagCTAGTTGCTACTGTGGACCCACATATCAAGGTTAAAGTAGACTCTGGCTACCAGGTTCATGATGAATTGCAA---------------ATCAAGACTCGGGATGGCTCTGACTACGAAGGCTGGTGTTGGCCAggtaagttccatgaccaatgaagttttagatctcctcactctcttacaggc Alignment from CESAR CTGGTGGCCATTGTGGACCCCCACATCAAG------GTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAg gc gaaatggcattgtaatctgaacaattcccccccttacttcccccttccagCTAGTTGCTACTGTGGACCCACATATCAAGGTTAAAGTAGACTCTGGCTACCAGGTTCATGATGAATTGCAA---------------ATCAAGACTCGGGATGGCTCTGACTACGAAGGCTGGTGTTGGCCAggtaagttccatgaccaatgaagttttttcttaccttgttaatcattaggc Alignment from Spaln_aa2Genome CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG GC gaaatggcattgtaatctgaacaattcccccccttacttcccccttccagCTAGTTGCTACTGTGGACCCACATATCAAGGTTAAAGTAGACTCTGGCTACCAGGTTCATGATGAATTGCAA---------------ATCAAGACTCGGGATGGCTCTGACTACGAAGGCTGGTGTTGGCCAGgtaagttccatgaccaatgaagttttagatctcctcactctcttacagGC Alignment from Spaln_nt2Genome CTGGTGGCCATTGTGGACCCCCACATCAAGGT------AGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG GC gaaatggcattgtaatctgaacaattcccccccttacttcccccttccagCTAGTTGCTACTGTGGACCCACATATCAAGGTTAAAGTAGACTCTGGCTACCAGGTTCATGATGAATTGCAAA---------------TCAAGACTCGGGATGGCTCTGACTACGAAGGCTGGTGTTGGCCAGgtaagttccatgaccaatgaagttttagatctcctcactctcttacagGC Alignment from Pairagon CTGGTGGCCATTGTGGACCCCCACATCAAG------GTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG GC gaaatggcattgtaatctgaacaattcccccccttacttcccccttccagCTAGTTGCTACTGTGGACCCACATATCAAGGTTAAAGTAGACTCTGGCTACCAGGTTCATGATGAATTGCAAA---------------TCAAGACTCGGGATGGCTCTGACTACGAAGGCTGGTGTTGGCCAGgtaagttccatgaccaatgaagttttagatctcctcactctcttacagGC Alignment from Exonerate_protein2genome CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG GC gaaatggcattgtaatctgaacaattcccccccttacttcccccttccagCTAGTTGCTACTGTGGACCCACATATCAAGGTTAAAGTAGACTCTGGCTACCAGGTTCATGATGAATTGCAA---------------ATCAAGACTCGGGATGGCTCTGACTACGAAGGCTGGTGTTGGCCAGgtaagttccatgaccaatgaagttttagatctcctcactctcttacagGC Alignment from Exonerate_coding2genome CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG GC gaaatggcattgtaatctgaacaattcccccccttacttcccccttccagCTAGTTGCTACTGTGGACCCACATATCAAGGTTAAAGTAGACTCTGGCTACCAGGTTCATGATGAATTGCAA---------------ATCAAGACTCGGGATGGCTCTGACTACGAAGGCTGGTGTTGGCCAGgtaagttccatgaccaatgaagttttagatctcctcactctcttacagGC Alignment from GeneWise CTGGTGGCCATTGTGGACCCCCACATCAAGGTA------GACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG GC gaaatggcattgtaatctgaacaattcccccccttacttcccccttccagCTAGTTGCTACTGTGGACCCACATATCAAGGTTAAAGTAGACTCTGGCTACCAGGTTCATGATGAATTGCAA---------------ATCAAGACTCGGGATGGCTCTGACTACGAAGGCTGGTGTTGGCCAGgtaagttccatgaccaatgaagttttagatctcctcactctcttacagGC #### Ganab_ID2480_19 --> 1 - 1 Original Alignment gCCCCTCTGGGTACAGTATCCTGAGGATATGTCTACCTTCAGTATAGAGGATCAGTTCATGCTTg catccattcagttctgctagaaacaatgtaattgtgcttgtgtcttgcaggCCACTCTGGGTACAGTACCCCCAGGACACATCTACCTTTAGCATAGAAGATCAGTTCATGGTTggtgagtggagaccccaactaggaactaatcagggaccaggctgctcagat Alignment from CESAR gCCCCTCTGGGTACAGTATCCTGAGGATATGTCTACCTTCAGTATAGAGGATCAGTTCATGCTTg catccattcagttctgctagaaacaatgtaattgtgcttgtgtcttgcaggCCACTCTGGGTACAGTACCCCCAGGACACATCTACCTTTAGCATAGAAGATCAGTTCATGGTTggtgagtggagaccccaactaggaactaatcagggaccaggctgctcagat Alignment from Spaln_aa2Genome GCCCCTCTGGGTACAGTATCCTGAGGATATGTCTACCTTCAGTATAGAGGATCAGTTCATGCTTG catccattcagttctgctagaaacaatgtaattgtgcttgtgtcttgcagGCCACTCTGGGTACAGTACCCCCAGGACACATCTACCTTTAGCATAGAAGATCAGTTCATGGTTGgtgagtggagaccccaactaggaactaatcagggaccaggctgctcagat Alignment from Spaln_nt2Genome GCCCCTCTGGGTACAGTATCCTGAGGATATGTCTACCTTCAGTATAGAGGATCAGTTCATGCTTG catccattcagttctgctagaaacaatgtaattgtgcttgtgtcttgcagGCCACTCTGGGTACAGTACCCCCAGGACACATCTACCTTTAGCATAGAAGATCAGTTCATGGTTGgtgagtggagaccccaactaggaactaatcagggaccaggctgctcagat Alignment from Pairagon GCCCCTCTGGGTACAGTATCCTGAGGATATGTCTACCTTCAGTATAGAGGATCAGTTCATGCTTG catccattcagttctgctagaaacaatgtaattgtgcttgtgtcttgcagGCCACTCTGGGTACAGTACCCCCAGGACACATCTACCTTTAGCATAGAAGATCAGTTCATGGTTGgtgagtggagaccccaactaggaactaatcagggaccaggctgctcagat Alignment from Exonerate_protein2genome GCCCCTCTGGGTACAGTATCCTGAGGATATGTCTACCTTCAGTATAGAGGATCAGTTCATGCTTG catccattcagttctgctagaaacaatgtaattgtgcttgtgtcttgcagGCCACTCTGGGTACAGTACCCCCAGGACACATCTACCTTTAGCATAGAAGATCAGTTCATGGTTGgtgagtggagaccccaactaggaactaatcagggaccaggctgctcagat Alignment from Exonerate_coding2genome GCCCCTCTGGGTACAGTATCCTGAGGATATGTCTACCTTCAGTATAGAGGATCAGTTCATGCTTG catccattcagttctgctagaaacaatgtaattgtgcttgtgtcttgcagGCCACTCTGGGTACAGTACCCCCAGGACACATCTACCTTTAGCATAGAAGATCAGTTCATGGTTGgtgagtggagaccccaactaggaactaatcagggaccaggctgctcagat Alignment from GeneWise GCCCCTCTGGGTACAGTATCCTGAGGATATGTCTACCTTCAGTATAGAGGATCAGTTCATGCTTG catccattcagttctgctagaaacaatgtaattgtgcttgtgtcttgcagGCCACTCTGGGTACAGTACCCCCAGGACACATCTACCTTTAGCATAGAAGATCAGTTCATGGTTGgtgagtggagaccccaactaggaactaatcagggaccaggctgctcagat #### Ganab_ID2481_20 --> 2 - 0 Original Alignment gtGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggaccaggctgctcagatgcgtacaaaacctctgtgttgccgtccagcaggtGACACACTCCTTATTCACCCTGTATCAGATGCCGGGGCCCATGGTGTGCAGGTCTATTTGCCCGGCCAAGAAGAAgtaaaatgccaaatagcaaagcccaaatggcaaataatacataggtgtgt Alignment from CESAR gtGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggaccaggctgctcagatgcgtacaaaacctctgtgttgccgtccagcaggtGACACACTCCTTATTCACCCTGTATCAGATGCCGGGGCCCATGGTGTGCAGGTCTATTTGCCCGGCCAAGAAGAAgtaaaatgccaaatagcaaagcccaaatggcaaataatacataggtgtgt Alignment from Spaln_aa2Genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggaccaggctgctcagatgcgtacaaaacctctgtgttgccgtccagcagGTGACACACTCCTTATTCACCCTGTATCAGATGCCGGGGCCCATGGTGTGCAGGTCTATTTGCCCGGCCAAGAAGAAgtaaaatgccaaatagcaaagcccaaatggcaaataatacataggtgtgt Alignment from Spaln_nt2Genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggaccaggctgctcagatgcgtacaaaacctctgtgttgccgtccagcagGTGACACACTCCTTATTCACCCTGTATCAGATGCCGGGGCCCATGGTGTGCAGGTCTATTTGCCCGGCCAAGAAGAAgtaaaatgccaaatagcaaagcccaaatggcaaataatacataggtgtgt Alignment from Pairagon GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggaccaggctgctcagatgcgtacaaaacctctgtgttgccgtccagcagGTGACACACTCCTTATTCACCCTGTATCAGATGCCGGGGCCCATGGTGTGCAGGTCTATTTGCCCGGCCAAGAAGAAgtaaaatgccaaatagcaaagcccaaatggcaaataatacataggtgtgt Alignment from Exonerate_protein2genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggaccaggctgctcagatgcgtacaaaacctctgtgttgccgtccagcagGTGACACACTCCTTATTCACCCTGTATCAGATGCCGGGGCCCATGGTGTGCAGGTCTATTTGCCCGGCCAAGAAGAAgtaaaatgccaaatagcaaagcccaaatggcaaataatacataggtgtgt Alignment from Exonerate_coding2genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggaccaggctgctcagatgcgtacaaaacctctgtgttgccgtccagcagGTGACACACTCCTTATTCACCCTGTATCAGATGCCGGGGCCCATGGTGTGCAGGTCTATTTGCCCGGCCAAGAAGAAgtaaaatgccaaatagcaaagcccaaatggcaaataatacataggtgtgt Alignment from GeneWise --GGTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggaccaggctgctcagatgcgtacaaaacctctgtgttgccgtccagCAGGTGACACACTCCTTATTCACCCTGTATCAGATGCCGGGGCCCATGGTGTGCAGGTCTATTTGCCCGGCCAAGAAGAAgtaaaatgccaaatagcaaagcccaaatggcaaataatacataggtgtgt #### Gbf1_ID9778_3 --> 2 - 1 Original Alignment aaCTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCGCTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAg atactgtaatgcgctctacgggttcgtgaccccagactctttcccaccagaaCTCTCTGAGATTGAACCAAATGTATTCCTCCGTCCTTTTCTGGAAGTAATACATTCAGAAGACACCACTGGCCCTATAACTGGGTTGGCACTTACCACAGCCAACAGATTCCTCTCTTACACTCTTATAggcaagtgcttgggttctagtaactctgctaccaaaccattgcatagccag Alignment from CESAR aaCTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCGCTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAg atactgtaatgcgctctacgggttcgtgaccccagactctttcccaccagaaCTCTCTGAGATTGAACCAAATGTATTCCTCCGTCCTTTTCTGGAAGTAATACATTCAGAAGACACCACTGGCCCTATAACTGGGTTGGCACTTACCACAGCCAACAGATTCCTCTCTTACACTCTTATAggcaagtgcttgggttctagtaactctgctaccaaaccattgcatagccag Alignment from Spaln_aa2Genome AACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCGCTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAG atactgtaatgcgctctacgggttcgtgaccccagactctttcccaccagAACTCTCTGAGATTGAACCAAATGTATTCCTCCGTCCTTTTCTGGAAGTAATACATTCAGAAGACACCACTGGCCCTATAACTGGGTTGGCACTTACCACAGCCAACAGATTCCTCTCTTACACTCTTATAGgcaagtgcttgggttctagtaactctgctaccaaaccattgcatagccag Alignment from Spaln_nt2Genome AACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCGCTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAG atactgtaatgcgctctacgggttcgtgaccccagactctttcccaccagAACTCTCTGAGATTGAACCAAATGTATTCCTCCGTCCTTTTCTGGAAGTAATACATTCAGAAGACACCACTGGCCCTATAACTGGGTTGGCACTTACCACAGCCAACAGATTCCTCTCTTACACTCTTATAGgcaagtgcttgggttctagtaactctgctaccaaaccattgcatagccag Alignment from Pairagon AACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCGCTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAG atactgtaatgcgctctacgggttcgtgaccccagactctttcccaccagAACTCTCTGAGATTGAACCAAATGTATTCCTCCGTCCTTTTCTGGAAGTAATACATTCAGAAGACACCACTGGCCCTATAACTGGGTTGGCACTTACCACAGCCAACAGATTCCTCTCTTACACTCTTATAGgcaagtgcttgggttctagtaactctgctaccaaaccattgcatagccag Alignment from Exonerate_protein2genome AACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCGCTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAG atactgtaatgcgctctacgggttcgtgaccccagactctttcccaccagAACTCTCTGAGATTGAACCAAATGTATTCCTCCGTCCTTTTCTGGAAGTAATACATTCAGAAGACACCACTGGCCCTATAACTGGGTTGGCACTTACCACAGCCAACAGATTCCTCTCTTACACTCTTATAGgcaagtgcttgggttctagtaactctgctaccaaaccattgcatagccag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATTCGCTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATA------------G atactgtaatgcgctctacgggttcgtgaccccagactctttcccaccagAACTCTCTGAGATTGAACCAAATGTATTCCTCCGTCCTTTTCTGGAAGTAATACATTCAGAAGACACCACTGGCCCTATAACTGGGTTGGCACTTACCACAGCCAACAGATTCCTCTCTTACACTCTTATAGGCAAGTGCTTGGgttctagtaactctgctaccaaaccattgcatagccag #### Gbf1_ID9782_5 --> 0 - 1 Original Alignment GTTCTCCGAACTCTGTTGCTAACCCCAGTGGGTACCCACTTAACAAATGAATCTGTATGTGAGATTATGCAGTCTTGCTTCCGGATTTGCTTTGAAATGAGACTCAGTg attcccccagaaagttcatatgccagagttagctcctcctgccttcctagGTTCTCCAGACACTTGTACTAGCCACAGTTGGCACCCACTTAACAAATGAATCTGTGTGTCAGATCATGCAACCTTGCTTTCAAATCTGCTTTAAGACAAGACTTAGTggtgagtcttccattcactatatagcattactatctgctgctgtctttgag Alignment from CESAR GTTCTCCGAACTCTGTTGCTAACCCCAGTGGGTACCCACTTAACAAATGAATCTGTATGTGAGATTATGCAGTCTTGCTTCCGGATTTGCTTTGAAATGAGACTCAGTg attcccccagaaagttcatatgccagagttagctcctcctgccttcctagGTTCTCCAGACACTTGTACTAGCCACAGTTGGCACCCACTTAACAAATGAATCTGTGTGTCAGATCATGCAACCTTGCTTTCAAATCTGCTTTAAGACAAGACTTAGTggtgagtcttccattcactatatagcattactatctgctgctgtctttgag Alignment from Spaln_aa2Genome GTTCTCCGAACTCTGTTGCTAACCCCAGTGGGTACCCACTTAACAAATGAATCTGTATGTGAGATTATGCAGTCTTGCTTCCGGATTTGCTTTGAAATGAGACTCAGTG attcccccagaaagttcatatgccagagttagctcctcctgccttcctagGTTCTCCAGACACTTGTACTAGCCACAGTTGGCACCCACTTAACAAATGAATCTGTGTGTCAGATCATGCAACCTTGCTTTCAAATCTGCTTTAAGACAAGACTTAGTGgtgagtcttccattcactatatagcattactatctgctgctgtctttgag Alignment from Spaln_nt2Genome GTTCTCCGAACTCTGTTGCTAACCCCAGTGGGTACCCACTTAACAAATGAATCTGTATGTGAGATTATGCAGTCTTGCTTCCGGATTTGCTTTGAAATGAGACTCAGTG attcccccagaaagttcatatgccagagttagctcctcctgccttcctagGTTCTCCAGACACTTGTACTAGCCACAGTTGGCACCCACTTAACAAATGAATCTGTGTGTCAGATCATGCAACCTTGCTTTCAAATCTGCTTTAAGACAAGACTTAGTGgtgagtcttccattcactatatagcattactatctgctgctgtctttgag Alignment from Pairagon GTTCTCCGAACTCTGTTGCTAACCCCAGTGGGTACCCACTTAACAAATGAATCTGTATGTGAGATTATGCAGTCTTGCTTCCGGATTTGCTTTGAAATGAGACTCAGTG attcccccagaaagttcatatgccagagttagctcctcctgccttcctagGTTCTCCAGACACTTGTACTAGCCACAGTTGGCACCCACTTAACAAATGAATCTGTGTGTCAGATCATGCAACCTTGCTTTCAAATCTGCTTTAAGACAAGACTTAGTGgtgagtcttccattcactatatagcattactatctgctgctgtctttgag Alignment from Exonerate_protein2genome GTTCTCCGAACTCTGTTGCTAACCCCAGTGGGTACCCACTTAACAAATGAATCTGTATGTGAGATTATGCAGTCTTGCTTCCGGATTTGCTTTGAAATGAGACTCAGTG attcccccagaaagttcatatgccagagttagctcctcctgccttcctagGTTCTCCAGACACTTGTACTAGCCACAGTTGGCACCCACTTAACAAATGAATCTGTGTGTCAGATCATGCAACCTTGCTTTCAAATCTGCTTTAAGACAAGACTTAGTGgtgagtcttccattcactatatagcattactatctgctgctgtctttgag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTTCTCCGAACTCTGTTGCTAACCCCAGTGGGTACCCACTTAACAAATGAATCTGTATGTGAGATTATGCAGTCTTGCTTCCGGATTTGCTTTGAAATGAGACTCAGTG attcccccagaaagttcatatgccagagttagctcctcctgccttcctagGTTCTCCAGACACTTGTACTAGCCACAGTTGGCACCCACTTAACAAATGAATCTGTGTGTCAGATCATGCAACCTTGCTTTCAAATCTGCTTTAAGACAAGACTTAGTGgtgagtcttccattcactatatagcattactatctgctgctgtctttgag #### Gbf1_ID9789_8 --> 0 - 1 Original Alignment CTGAAAATGAGAGCAGGAGGCATGAGTGACTCGTCCAAGTGGAAGAAACAGAAAAGATCTCCTCGACCTCCACGTCATACAACCAAAGTCACACCAGGTTCAGAGCTGCCCACCCCAAATGGAGCCACATTACCCTCTAACCTTACTg gcaaagcctgaagttcaatcatatatggtggcagtttctttctaccttagTTGAAAATGAGAGCAGAAGGTATGAGTGACTCATCCAAGTGGAAGAAACAAAAACGATCTCCTAGACCTCCACATCATACAACCAAGGTCACACCAGGTTCAGAGCTGCCCACCCCAAATGGAGCAACATTACCCTCTAACCTCACTggtaagagagatggctaaatgtttataaaaaaatattagaggttgcttact Alignment from CESAR CTGAAAATGAGAGCAGGAGGCATGAGTGACTCGTCCAAGTGGAAGAAACAGAAAAGATCTCCTCGACCTCCACGTCATACAACCAAAGTCACACCAGGTTCAGAGCTGCCCACCCCAAATGGAGCCACATTACCCTCTAACCTTACTg gcaaagcctgaagttcaatcatatatggtggcagtttctttctaccttagTTGAAAATGAGAGCAGAAGGTATGAGTGACTCATCCAAGTGGAAGAAACAAAAACGATCTCCTAGACCTCCACATCATACAACCAAGGTCACACCAGGTTCAGAGCTGCCCACCCCAAATGGAGCAACATTACCCTCTAACCTCACTggtaagagagatggctaaatgtttataaaaaaatattagaggttgcttact Alignment from Spaln_aa2Genome CTGAAAATGAGAGCAGGAGGCATGAGTGACTCGTCCAAGTGGAAGAAACAGAAAAGATCTCCTCGACCTCCACGTCATACAACCAAAGTCACACCAGGTTCAGAGCTGCCCACCCCAAATGGAGCCACATTACCCTCTAACCTTACTG gcaaagcctgaagttcaatcatatatggtggcagtttctttctaccttagTTGAAAATGAGAGCAGAAGGTATGAGTGACTCATCCAAGTGGAAGAAACAAAAACGATCTCCTAGACCTCCACATCATACAACCAAGGTCACACCAGGTTCAGAGCTGCCCACCCCAAATGGAGCAACATTACCCTCTAACCTCACTGgtaagagagatggctaaatgtttataaaaaaatattagaggttgcttact Alignment from Spaln_nt2Genome CTGAAAATGAGAGCAGGAGGCATGAGTGACTCGTCCAAGTGGAAGAAACAGAAAAGATCTCCTCGACCTCCACGTCATACAACCAAAGTCACACCAGGTTCAGAGCTGCCCACCCCAAATGGAGCCACATTACCCTCTAACCTTACTG gcaaagcctgaagttcaatcatatatggtggcagtttctttctaccttagTTGAAAATGAGAGCAGAAGGTATGAGTGACTCATCCAAGTGGAAGAAACAAAAACGATCTCCTAGACCTCCACATCATACAACCAAGGTCACACCAGGTTCAGAGCTGCCCACCCCAAATGGAGCAACATTACCCTCTAACCTCACTGgtaagagagatggctaaatgtttataaaaaaatattagaggttgcttact Alignment from Pairagon CTGAAAATGAGAGCAGGAGGCATGAGTGACTCGTCCAAGTGGAAGAAACAGAAAAGATCTCCTCGACCTCCACGTCATACAACCAAAGTCACACCAGGTTCAGAGCTGCCCACCCCAAATGGAGCCACATTACCCTCTAACCTTACTG gcaaagcctgaagttcaatcatatatggtggcagtttctttctaccttagTTGAAAATGAGAGCAGAAGGTATGAGTGACTCATCCAAGTGGAAGAAACAAAAACGATCTCCTAGACCTCCACATCATACAACCAAGGTCACACCAGGTTCAGAGCTGCCCACCCCAAATGGAGCAACATTACCCTCTAACCTCACTGgtaagagagatggctaaatgtttataaaaaaatattagaggttgcttact Alignment from Exonerate_protein2genome AGCTGAAAATGAGAGCAGGAGGCATGAGTGACTCGTCCAAGTGGAAGAAACAGAAAAGATCTCCTCGACCTCCACGTCATACAACCAAAGTCACACCAGGTTCAGAGCTGCCCACCCCAAATGGAGCCACATTACCCTCTAACCTTACTG gcaaagcctgaagttcaatcatatatggtggcagtttctttctaccttAGTTGAAAATGAGAGCAGAAGGTATGAGTGACTCATCCAAGTGGAAGAAACAAAAACGATCTCCTAGACCTCCACATCATACAACCAAGGTCACACCAGGTTCAGAGCTGCCCACCCCAAATGGAGCAACATTACCCTCTAACCTCACTGgtaagagagatggctaaatgtttataaaaaaatattagaggttgcttact Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTGAAAATGAGAGCAGGAGGCATGAGTGACTCGTCCAAGTGGAAGAAACAGAAAAGATCTCCTCGACCTCCACGTCATACAACCAAAGTCACACCAGGTTCAGAGCTGCCCACCCCAAATGGAGCCACATTACCCTCTAACCTTACTG gcaaagcctgaagttcaatcatatatggtggcagtttctttctaccttagTTGAAAATGAGAGCAGAAGGTATGAGTGACTCATCCAAGTGGAAGAAACAAAAACGATCTCCTAGACCTCCACATCATACAACCAAGGTCACACCAGGTTCAGAGCTGCCCACCCCAAATGGAGCAACATTACCCTCTAACCTCACTGgtaagagagatggctaaatgtttataaaaaaatattagaggttgcttact #### Gbf1_ID9790_9 --> 2 - 0 Original Alignment gtGGTGTGCCCTTCATTGATGCACCCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGATAGTGGCCTGGAATTATCCTCCCAGACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGTGAGATGGGCGCTTCTGATCAGCTTGACCCTCAG ctgtctctctgctactaagtttactgccatatttttttccttcaaattagggGGTGTCCCTTTCATTGATGCAACAACATCTATCTCCTCGGCAAGTGCTGAGACTGCCTCAACAGTAGTCAGCCCTTGCACAGACAGTGGCCTGGAGTTGTCTTCACAGACAACATCAAAGAAAGATCTCACAGACTTAGAACAGGCTGGTTCTCCAAGGGAGATTACCACAAGTGAGCCTGGAATTAGTGGTACAGGTAGTTCTGACCAACTTGACACTCAGgtggggctgcttaaggaaagtgccttttcataacttggagtgtatatggt Alignment from CESAR gtGGTGTGCCCTTCATTGATGCACCCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGATAGTGGCCTGGAATTATCCTCCCAGACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGTGAGATGGGCGCTTCTGATCAGCTTGACCCTCAG ctgtctctctgctactaagtttactgccatatttttttccttcaaattagggGGTGTCCCTTTCATTGATGCAACAACATCTATCTCCTCGGCAAGTGCTGAGACTGCCTCAACAGTAGTCAGCCCTTGCACAGACAGTGGCCTGGAGTTGTCTTCACAGACAACATCAAAGAAAGATCTCACAGACTTAGAACAGGCTGGTTCTCCAAGGGAGATTACCACAAGTGAGCCTGGAATTAGTGGTACAGGTAGTTCTGACCAACTTGACACTCAGgtggggctgcttaaggaaagtgccttttcataacttggagtgtatatggt Alignment from Spaln_aa2Genome GTGGTGTGCCCTTCATTGATGCACCCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGATAGTGGCCTGGAATTATCCTCCCAGACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGTGAGATGGGCGCTTCTGATCAGCTTGACCCTCAG ctgtctctctgctactaagtttactgccatatttttttccttcaaattagGGGGTGTCCCTTTCATTGATGCAACAACATCTATCTCCTCGGCAAGTGCTGAGACTGCCTCAACAGTAGTCAGCCCTTGCACAGACAGTGGCCTGGAGTTGTCTTCACAGACAACATCAAAGAAAGATCTCACAGACTTAGAACAGGCTGGTTCTCCAAGGGAGATTACCACAAGTGAGCCTGGAATTAGTGGTACAGGTAGTTCTGACCAACTTGACACTCAGgtggggctgcttaaggaaagtgccttttcataacttggagtgtatatggt Alignment from Spaln_nt2Genome GTGGTGTGCCCTTCATTGATGCACCCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGATAGTGGCCTGGAATTATCCTCCCAGACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGTGAGATGGGCGCTTCTGATCAGCTTGACCCTCAG ctgtctctctgctactaagtttactgccatatttttttccttcaaattagGGGGTGTCCCTTTCATTGATGCAACAACATCTATCTCCTCGGCAAGTGCTGAGACTGCCTCAACAGTAGTCAGCCCTTGCACAGACAGTGGCCTGGAGTTGTCTTCACAGACAACATCAAAGAAAGATCTCACAGACTTAGAACAGGCTGGTTCTCCAAGGGAGATTACCACAAGTGAGCCTGGAATTAGTGGTACAGGTAGTTCTGACCAACTTGACACTCAGgtggggctgcttaaggaaagtgccttttcataacttggagtgtatatggt Alignment from Pairagon GTGGTGTGCCCTTCATTGATGCACCCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGATAGTGGCCTGGAATTATCCTCCCAGACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGTGAGATGGGCGCTTCTGATCAGCTTGACCCTCAG ctgtctctctgctactaagtttactgccatatttttttccttcaaattagGGGGTGTCCCTTTCATTGATGCAACAACATCTATCTCCTCGGCAAGTGCTGAGACTGCCTCAACAGTAGTCAGCCCTTGCACAGACAGTGGCCTGGAGTTGTCTTCACAGACAACATCAAAGAAAGATCTCACAGACTTAGAACAGGCTGGTTCTCCAAGGGAGATTACCACAAGTGAGCCTGGAATTAGTGGTACAGGTAGTTCTGACCAACTTGACACTCAGgtggggctgcttaaggaaagtgccttttcataacttggagtgtatatggt Alignment from Exonerate_protein2genome GTGGTGTGCCCTTCATTGATGCACCCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGATAGTGGCCTGGAATTATCCTCCCAGACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGTGAGATGGGCGCTTCTGATCAGCTTGACCCTCAG ctgtctctctgctactaagtttactgccatatttttttccttcaaattagGGGGTGTCCCTTTCATTGATGCAACAACATCTATCTCCTCGGCAAGTGCTGAGACTGCCTCAACAGTAGTCAGCCCTTGCACAGACAGTGGCCTGGAGTTGTCTTCACAGACAACATCAAAGAAAGATCTCACAGACTTAGAACAGGCTGGTTCTCCAAGGGAGATTACCACAAGTGAGCCTGGAATTAGTGGTACAGGTAGTTCTGACCAACTTGACACTCAGgtggggctgcttaaggaaagtgccttttcataacttggagtgtatatggt Alignment from Exonerate_coding2genome ctgtctctctgctactaagtttactgccatatttttttccttcaaattagggggtgtccctttcattgatgcaacaacatctatctcctcggcaagtgctgagactgcctcaacagtagtcagcccttgcacagacagtggcctggagttgtcttcacagacaacatcaaagaaagatctcacagacttagaacaggctggttctccaagggagattaccacaagtgagcctggaattagtggtacaggtagttctgaccaacttgacactcaggtggggctgcttaaggaaagtgccttttcataacttggagtgtatatggt Alignment from GeneWise GTGGTGTGCCCTTCATTGATGCACCCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGATAGTGGCCTGGAATTATCCTCCCAGACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGTGAGATGGGCGCTTCTGATCAGCTTGACCCTCAG ctgtctctctgctactaagtttactgccatatttttttccttcaaattagGGGGTGTCCCTTTCATTGATGCAACAACATCTATCTCCTCGGCAAGTGCTGAGACTGCCTCAACAGTAGTCAGCCCTTGCACAGACAGTGGCCTGGAGTTGTCTTCACAGACAACATCAAAGAAAGATCTCACAGACTTAGAACAGGCTGGTTCTCCAAGGGAGATTACCACAAGTGAGCCTGGAATTAGTGGTACAGGTAGTTCTGACCAACTTGACACTCAGgtggggctgcttaaggaaagtgccttttcataacttggagtgtatatggt #### Gbf1_ID9792_11 --> 2 - 0 Original Alignment gcACAGCTTTGGTTCCTTATGGTCTTCCTTGCATCCGTGAGCTCTTCCGCTTCCTTATCTCCCTCACAAATCCACACGAC---CGCCATAACTCTGAGGTGATGATCCACATGGGACTGCATTTGCTGACAGTGGCTCTTGAGTCAGCGCCTGTGGCCCAGTGCCAGACCCTCTTGGGTCTCATTAAGGATGAGATGTGCCGACACTTATTCCAG gggtagctcagccagtgcagacagagtgggctgacttgtcttcctgacaggcACTGCTCTGGTCCCTTATGGGGTCCCTTGCATTCATGAGCTCTTCCGCTTCCTTATTTCTCTCACAAACCCACATGATGACCAACAAAATACCAAGGTGGTGATCTATATGGGCTTGCATTTTTTGACAATTGCTCTGGAGTCAGCACCCTTGACACAGTGCCAGACCCTCCTAGGTCCCATCAAGGATGAAATGTGCCAACATCTATTTCAGgtaagaggttagtggcttgtttcagcccctcctagcactctcccacatgc Alignment from CESAR gcACAGCTTTGGTTCCTTATGGTCTTCCTTGCATCCGTGAGCTCTTCCGCTTCCTTATCTCCCTCACAAATCCACAC---GACCGCCATAACTCTGAGGTGATGATCCACATGGGACTGCATTTGCTGACAGTGGCTCTTGAGTCAGCGCCTGTGGCCCAGTGCCAGACCCTCTTGGGTCTCATTAAGGATGAGATGTGCCGACACTTATTCCAG gggtagctcagccagtgcagacagagtgggctgacttgtcttcctgacaggcACTGCTCTGGTCCCTTATGGGGTCCCTTGCATTCATGAGCTCTTCCGCTTCCTTATTTCTCTCACAAACCCACATGATGACCAACAAAATACCAAGGTGGTGATCTATATGGGCTTGCATTTTTTGACAATTGCTCTGGAGTCAGCACCCTTGACACAGTGCCAGACCCTCCTAGGTCCCATCAAGGATGAAATGTGCCAACATCTATTTCAGgtaagaggttagtggcttgtttcagcccctcctagcactctcccacatgc Alignment from Spaln_aa2Genome GCACAGCTTTGGTTCCTTATGGTCTTCCTTGCATCCGTGAGCTCTTCCGCTTCCTTATCTCCCTCACAAATCCACAC---GACCGCCATAACTCTGAGGTGATGATCCACATGGGACTGCATTTGCTGACAGTGGCTCTTGAGTCAGCGCCTGTGGCCCAGTGCCAGACCCTCTTGGGTCTCATTAAGGATGAGATGTGCCGACACTTATTCCAG gggtagctcagccagtgcagacagagtgggctgacttgtcttcctgacagGCACTGCTCTGGTCCCTTATGGGGTCCCTTGCATTCATGAGCTCTTCCGCTTCCTTATTTCTCTCACAAACCCACATGATGACCAACAAAATACCAAGGTGGTGATCTATATGGGCTTGCATTTTTTGACAATTGCTCTGGAGTCAGCACCCTTGACACAGTGCCAGACCCTCCTAGGTCCCATCAAGGATGAAATGTGCCAACATCTATTTCAGgtaagaggttagtggcttgtttcagcccctcctagcactctcccacatgc Alignment from Spaln_nt2Genome GCACAGCTTTGGTTCCTTATGGTCTTCCTTGCATCCGTGAGCTCTTCCGCTTCCTTATCTCCCTCACAAATCCACACGA---CCGCCATAACTCTGAGGTGATGATCCACATGGGACTGCATTTGCTGACAGTGGCTCTTGAGTCAGCGCCTGTGGCCCAGTGCCAGACCCTCTTGGGTCTCATTAAGGATGAGATGTGCCGACACTTATTCCAG gggtagctcagccagtgcagacagagtgggctgacttgtcttcctgacagGCACTGCTCTGGTCCCTTATGGGGTCCCTTGCATTCATGAGCTCTTCCGCTTCCTTATTTCTCTCACAAACCCACATGATGACCAACAAAATACCAAGGTGGTGATCTATATGGGCTTGCATTTTTTGACAATTGCTCTGGAGTCAGCACCCTTGACACAGTGCCAGACCCTCCTAGGTCCCATCAAGGATGAAATGTGCCAACATCTATTTCAGgtaagaggttagtggcttgtttcagcccctcctagcactctcccacatgc Alignment from Pairagon GCACAGCTTTGGTTCCTTATGGTCTTCCTTGCATCCGTGAGCTCTTCCGCTTCCTTATCTCCCTCACAAATCCACACGACCGCCATAACTCTG---------------AGGTGATGATCCACATGGGACTGCATTTGCTGACAGTGGCTCTTGAGTCAGCGCCTGTGGCCCAGTGCCAGACCCTCTTGGGTCTCATTAAGGATGAGATGTGCCGACACTTATTCCAG gggtagctcagccagtgcagacagagtgggctgacttgtcttcctgacagGCACTGCTCTGGTCCCTTATGGGGTCCCTTGCATTCATGAGCTCTTCCGCTTCCTTATTTCTCTCACAAACCCACATGA------------TGACCAACAAAATACCAAGGTGGTGATCTATATGGGCTTGCATTTTTTGACAATTGCTCTGGAGTCAGCACCCTTGACACAGTGCCAGACCCTCCTAGGTCCCATCAAGGATGAAATGTGCCAACATCTATTTCAGgtaagaggttagtggcttgtttcagcccctcctagcactctcccacatgc Alignment from Exonerate_protein2genome GCACAGCTTTGGTTCCTTATGGTCTTCCTTGCATCCGTGAGCTCTTCCGCTTCCTTATCTCCCTCACAAATCCACAC---GACCGCCATAACTCTGAGGTGATGATCCACATGGGACTGCATTTGCTGACAGTGGCTCTTGAGTCAGCGCCTGTGGCCCAGTGCCAGACCCTCTTGGGTCTCATTAAGGATGAGATGTGCCGACACTTATTCCAG gggtagctcagccagtgcagacagagtgggctgacttgtcttcctgacagGCACTGCTCTGGTCCCTTATGGGGTCCCTTGCATTCATGAGCTCTTCCGCTTCCTTATTTCTCTCACAAACCCACATGATGACCAACAAAATACCAAGGTGGTGATCTATATGGGCTTGCATTTTTTGACAATTGCTCTGGAGTCAGCACCCTTGACACAGTGCCAGACCCTCCTAGGTCCCATCAAGGATGAAATGTGCCAACATCTATTTCAGgtaagaggttagtggcttgtttcagcccctcctagcactctcccacatgc Alignment from Exonerate_coding2genome gggtagctcagccagtgcagacagagtgggctgacttgtcttcctgacaggcactgctctggtcccttatggggtcccttgcattcatgagctcttccgcttccttatttctctcacaaacccacatgatgaccaacaaaataccaaggtggtgatctatatgggcttgcattttttgacaattgctctggagtcagcacccttgacacagtgccagaccctcctaggtcccatcaaggatgaaatgtgccaacatctatttcaggtaagaggttagtggcttgtttcagcccctcctagcactctcccacatgc Alignment from GeneWise GCACAGCTTTGGTTCCTTATGGTCTTCCTTGCATCCGTGAGCTCTTCCGCTTCCTTATCTCCCTCACAAATCCACACGAC---CGCCATAACTCTGAGGTGATGATCCACATGGGACTGCATTTGCTGACAGTGGCTCTTGAGTCAGCGCCTGTGGCCCAGTGCCAGACCCTCTTGGGTCTCATTAAGGATGAGATGTGCCGACACTTATTCCAG gggtagctcagccagtgcagacagagtgggctgacttgtcttcctgacagGCACTGCTCTGGTCCCTTATGGGGTCCCTTGCATTCATGAGCTCTTCCGCTTCCTTATTTCTCTCACAAACCCACATGATGACCAACAAAATACCAAGGTGGTGATCTATATGGGCTTGCATTTTTTGACAATTGCTCTGGAGTCAGCACCCTTGACACAGTGCCAGACCCTCCTAGGTCCCATCAAGGATGAAATGTGCCAACATCTATTTCAGgtaagaggttagtggcttgtttcagcccctcctagcactctcccacatgc #### Gbf1_ID9795_14 --> 0 - 1 Original Alignment AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGt cccacttgacagtatacaggttaaatagtcatttctgttcacctttttagAATGTATTTCCTGTATCTGGTCAACTTGATACTACACATCTTCTGTCCCTTGATGCCCTTTTAACTTCTATTGACAGTAATGAGCTTCATTCTCAAGCCAAGGTTCTCAATGCCCTTAACCAGCAAGAGAATAAGGAGACGTCAAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGtgtatgtaacttaattattttattattactactctttaaacccatgctctg Alignment from CESAR AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGt cccacttgacagtatacaggttaaatagtcatttctgttcacctttttagAATGTATTTCCTGTATCTGGTCAACTTGATACTACACATCTTCTGTCCCTTGATGCCCTTTTAACTTCTATTGACAGTAATGAGCTTCATTCTCAAGCCAAGGTTCTCAATGCCCTTAACCAGCAAGAGAATAAGGAGACGTCAAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGtgtatgtaacttaattattttattattactactctttaaacccatgctctg Alignment from Spaln_aa2Genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT cccacttgacagtatacaggttaaatagtcatttctgttcacctttttagAATGTATTTCCTGTATCTGGTCAACTTGATACTACACATCTTCTGTCCCTTGATGCCCTTTTAACTTCTATTGACAGTAATGAGCTTCATTCTCAAGCCAAGGTTCTCAATGCCCTTAACCAGCAAGAGAATAAGGAGACGTCAAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGTgtatgtaacttaattattttattattactactctttaaacccatgctctg Alignment from Spaln_nt2Genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT cccacttgacagtatacaggttaaatagtcatttctgttcacctttttagAATGTATTTCCTGTATCTGGTCAACTTGATACTACACATCTTCTGTCCCTTGATGCCCTTTTAACTTCTATTGACAGTAATGAGCTTCATTCTCAAGCCAAGGTTCTCAATGCCCTTAACCAGCAAGAGAATAAGGAGACGTCAAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGTgtatgtaacttaattattttattattactactctttaaacccatgctctg Alignment from Pairagon ------------------------------------------------AGAATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT CCCACTTGACAGTATACAGGTTAAATAGTCATTTCTGTTCACCTTTTTAGAATGTATTTCCTGTATCTGGTCAACTTGATACTACACATCTTCTGTCCCTTGATGCCCTTTTAACTTCTATTGACAGTAATGAGCTTCATTCTCAAGCCAAGGTTCTCAATGCCCTTAACCAGCAAGAGAATAAGGAGACGTCAAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGTgtatgtaacttaattattttattattactactctttaaacccatgctctg Alignment from Exonerate_protein2genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT cccacttgacagtatacaggttaaatagtcatttctgttcacctttttagAATGTATTTCCTGTATCTGGTCAACTTGATACTACACATCTTCTGTCCCTTGATGCCCTTTTAACTTCTATTGACAGTAATGAGCTTCATTCTCAAGCCAAGGTTCTCAATGCCCTTAACCAGCAAGAGAATAAGGAGACGTCAAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGTgtatgtaacttaattattttattattactactctttaaacccatgctctg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT cccacttgacagtatacaggttaaatagtcatttctgttcacctttttagAATGTATTTCCTGTATCTGGTCAACTTGATACTACACATCTTCTGTCCCTTGATGCCCTTTTAACTTCTATTGACAGTAATGAGCTTCATTCTCAAGCCAAGGTTCTCAATGCCCTTAACCAGCAAGAGAATAAGGAGACGTCAAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGTgtatgtaacttaattattttattattactactctttaaacccatgctctg #### Gbf1_ID9798_17 --> 0 - 2 Original Alignment CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTCCGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGag ttgtatttgaaactaaaacggattacactcctcccctctgtcctctccagTTATTGAGCACTGGTACAGAGCAGTTCAACCAAGAACCAAAGAAGGGGATACAATTTCTGCAGGAGAAAGGTCACCTCACTATACCAATGGATAACACAGAAGTTGCCCAATGGCTGCAAGGAAAGCCTCGTTTAGACGAGAAGATGATTGGAGAATTTGTGAGTGACCATGAAATTATTGACCTTTTAGAAAGTTTTGTGaggtgagtaaggtttttaaccaatgggttaagtcagccagaacaatagttgc Alignment from CESAR CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTCCGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGag ttgtatttgaaactaaaacggattacactcctcccctctgtcctctccagTTATTGAGCACTGGTACAGAGCAGTTCAACCAAGAACCAAAGAAGGGGATACAATTTCTGCAGGAGAAAGGTCACCTCACTATACCAATGGATAACACAGAAGTTGCCCAATGGCTGCAAGGAAAGCCTCGTTTAGACGAGAAGATGATTGGAGAATTTGTGAGTGACCATGAAATTATTGACCTTTTAGAAAGTTTTGTGaggtgagtaaggtttttaaccaatgggttaagtcagccagaacaatagttgc Alignment from Spaln_aa2Genome CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTCCGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGAG ttgtatttgaaactaaaacggattacactcctcccctctgtcctctccagTTATTGAGCACTGGTACAGAGCAGTTCAACCAAGAACCAAAGAAGGGGATACAATTTCTGCAGGAGAAAGGTCACCTCACTATACCAATGGATAACACAGAAGTTGCCCAATGGCTGCAAGGAAAGCCTCGTTTAGACGAGAAGATGATTGGAGAATTTGTGAGTGACCATGAAATTATTGACCTTTTAGAAAGTTTTGTGAGgtgagtaaggtttttaaccaatgggttaagtcagccagaacaatagttgc Alignment from Spaln_nt2Genome CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTCCGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGAG ttgtatttgaaactaaaacggattacactcctcccctctgtcctctccagTTATTGAGCACTGGTACAGAGCAGTTCAACCAAGAACCAAAGAAGGGGATACAATTTCTGCAGGAGAAAGGTCACCTCACTATACCAATGGATAACACAGAAGTTGCCCAATGGCTGCAAGGAAAGCCTCGTTTAGACGAGAAGATGATTGGAGAATTTGTGAGTGACCATGAAATTATTGACCTTTTAGAAAGTTTTGTGAGgtgagtaaggtttttaaccaatgggttaagtcagccagaacaatagttgc Alignment from Pairagon CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTCCGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGAG ttgtatttgaaactaaaacggattacactcctcccctctgtcctctccagTTATTGAGCACTGGTACAGAGCAGTTCAACCAAGAACCAAAGAAGGGGATACAATTTCTGCAGGAGAAAGGTCACCTCACTATACCAATGGATAACACAGAAGTTGCCCAATGGCTGCAAGGAAAGCCTCGTTTAGACGAGAAGATGATTGGAGAATTTGTGAGTGACCATGAAATTATTGACCTTTTAGAAAGTTTTGTGAGgtgagtaaggtttttaaccaatgggttaagtcagccagaacaatagttgc Alignment from Exonerate_protein2genome CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTCCGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGAG ttgtatttgaaactaaaacggattacactcctcccctctgtcctctccagTTATTGAGCACTGGTACAGAGCAGTTCAACCAAGAACCAAAGAAGGGGATACAATTTCTGCAGGAGAAAGGTCACCTCACTATACCAATGGATAACACAGAAGTTGCCCAATGGCTGCAAGGAAAGCCTCGTTTAGACGAGAAGATGATTGGAGAATTTGTGAGTGACCATGAAATTATTGACCTTTTAGAAAGTTTTGTGAGgtgagtaaggtttttaaccaatgggttaagtcagccagaacaatagttgc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTCCGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGAG ttgtatttgaaactaaaacggattacactcctcccctctgtcctctccagTTATTGAGCACTGGTACAGAGCAGTTCAACCAAGAACCAAAGAAGGGGATACAATTTCTGCAGGAGAAAGGTCACCTCACTATACCAATGGATAACACAGAAGTTGCCCAATGGCTGCAAGGAAAGCCTCGTTTAGACGAGAAGATGATTGGAGAATTTGTGAGTGACCATGAAATTATTGACCTTTTAGAAAGTTTTGTGAGgtgagtaaggtttttaaccaatgggttaagtcagccagaacaatagttgc #### Gbf1_ID9801_20 --> 0 - 2 Original Alignment GAATTTCGCAAAAACCTAAAAGGTGTGAATGGAGGCAAGGACTTTGAGCAAGACATCCTGGAAGACATGTACCATGCCATCaa acatttggtatccgatcaatatcaaagagaccccttcccttgctctacagGACATTCGTAAAAACTCAAAATGTGTAAATGGGGGCAGGGATTTTCAACAGGACATCCTAAAAGGTATGTACCATTCTATTgagtgaggtacggtcattgtaaatatacaaagagtttacataacaaactcaa Alignment from CESAR GAATTTCGCAAAAACCTAAAAGGTGTGAATGGAGGCAAGGACTTTGAGCAAGACATCCTGGAAGACATGTACCATGCCATCaa acatttggtatccgatcaatatcaaagagaccccttcccttgctctacagGACATTCGTAAAAACTCAAAATGTGTAAATGGGGGCAGGGATTTTCAACAGGACATCCTAAAAGGTATGTACCATTCTATTgagtgaggtacggtcattgtaaatatacaaagagtttacataacaaactcaa Alignment from Spaln_aa2Genome GAATTTCGCAAAAACCTAAAAGGTGTGAATGGAGGCAAGGACTTTGAGCAAGACATCCTGGAAGACATGTACCATGCCATCAA acatttggtatccgatcaatatcaaagagaccccttcccttgctctacagGACATTCGTAAAAACTCAAAATGTGTAAATGGGGGCAGGGATTTTCAACAGGACATCCTAAAAGGTATGTACCATTCTATTGAgtgaggtacggtcattgtaaatatacaaagagtttacataacaaactcaa Alignment from Spaln_nt2Genome GAATTTCGCAAAAACCTAAAAGGTGTGAATGGAGGCAAGGACTTTGAGCAAGACATCCTGGAAGACATGTACCATGCCATCAA acatttggtatccgatcaatatcaaagagaccccttcccttgctctacagGACATTCGTAAAAACTCAAAATGTGTAAATGGGGGCAGGGATTTTCAACAGGACATCCTAAAAGGTATGTACCATTCTATTGAgtgaggtacggtcattgtaaatatacaaagagtttacataacaaactcaa Alignment from Pairagon GAATTTCGCAAAAACCTAAAAGGTGTGAATGGAGGCAAGGACTTTGAGCAAGACATCCTGGAAGACATGTACCATGCCATCAA acatttggtatccgatcaatatcaaagagaccccttcccttgctctacagGACATTCGTAAAAACTCAAAATGTGTAAATGGGGGCAGGGATTTTCAACAGGACATCCTAAAAGGTATGTACCATTCTATTGAgtgaggtacggtcattgtaaatatacaaagagtttacataacaaactcaa Alignment from Exonerate_protein2genome GAATTTCGCAAAAACCTAAAAGGTGTGAATGGAGGCAAGGACTTTGAGCAAGACATCCTGGAAGACATGTACCATGCCATCAA acatttggtatccgatcaatatcaaagagaccccttcccttgctctacagGACATTCGTAAAAACTCAAAATGTGTAAATGGGGGCAGGGATTTTCAACAGGACATCCTAAAAGGTATGTACCATTCTATTGAgtgaggtacggtcattgtaaatatacaaagagtttacataacaaactcaa Alignment from Exonerate_coding2genome acatttggtatccgatcaatatcaaagagaccccttcccttgctctacaggacattcgtaaaaactcaaaatgtgtaaatgggggcagggattttcaacaggacatcctaaaaggtatgtaccattctattgagtgaggtacggtcattgtaaatatacaaagagtttacataacaaactcaa Alignment from GeneWise GAATTTCGCAAAAACCTAAAAGGTGTGAATGGAGGCAAGGACTTTGAGCAAGACATCCTGGAAGACATGTACCATGCCATCAA acatttggtatccgatcaatatcaaagagaccccttcccttgctctacagGACATTCGTAAAAACTCAAAATGTGTAAATGGGGGCAGGGATTTTCAACAGGACATCCTAAAAGGTATGTACCATTCTATTGAgtgaggtacggtcattgtaaatatacaaagagtttacataacaaactcaa #### Gbf1_ID9814_33 --> 0 - 1 Original Alignment TTGCTAGACCTGATGCATACCCTGCACACACGGGCAGCCTCTATCTACAGCTCATGGGCAGAGGAGCAACGCCACCTGGAGGGAGGTGGCCAGAAGATTGAAGCTGACTCACGCACCCTCTGGGCCCACTGCTGGTGCCCTTTATTACAAg atgataaattcatacatcctatgtgtgagttttgctacatttttttttagTTATTAGACCTGATGCATACCCTGCACACACGTGCTGCCTCTGTCTATAGTTCATGGGCAGAGGAGCAACGCCACCTTGAAGGGGGTGGACAGAAGATTGGAGCTGATTCTCACACCCTCTGGGCCCACTGCTGGTGCCCTTTATCACGAggtgtgtcaaattggaggtgctagcaggtgcaggagaaaggctgtccaact Alignment from CESAR TTGCTAGACCTGATGCATACCCTGCACACACGGGCAGCCTCTATCTACAGCTCATGGGCAGAGGAGCAACGCCACCTGGAGGGAGGTGGCCAGAAGATTGAAGCTGACTCACGCACCCTCTGGGCCCACTGCTGGTGCCCTTTATTACAAg atgataaattcatacatcctatgtgtgagttttgctacatttttttttagTTATTAGACCTGATGCATACCCTGCACACACGTGCTGCCTCTGTCTATAGTTCATGGGCAGAGGAGCAACGCCACCTTGAAGGGGGTGGACAGAAGATTGGAGCTGATTCTCACACCCTCTGGGCCCACTGCTGGTGCCCTTTATCACGAggtgtgtcaaattggaggtgctagcaggtgcaggagaaaggctgtccaact Alignment from Spaln_aa2Genome TTGCTAGACCTGATGCATACCCTGCACACACGGGCAGCCTCTATCTACAGCTCATGGGCAGAGGAGCAACGCCACCTGGAGGGAGGTGGCCAGAAGATTGAAGCTGACTCACGCACCCTCTGGGCCCACTGCTGGTGCCCTTTATTACAAG atgataaattcatacatcctatgtgtgagttttgctacatttttttttagTTATTAGACCTGATGCATACCCTGCACACACGTGCTGCCTCTGTCTATAGTTCATGGGCAGAGGAGCAACGCCACCTTGAAGGGGGTGGACAGAAGATTGGAGCTGATTCTCACACCCTCTGGGCCCACTGCTGGTGCCCTTTATCACGAGgtgtgtcaaattggaggtgctagcaggtgcaggagaaaggctgtccaact Alignment from Spaln_nt2Genome TTGCTAGACCTGATGCATACCCTGCACACACGGGCAGCCTCTATCTACAGCTCATGGGCAGAGGAGCAACGCCACCTGGAGGGAGGTGGCCAGAAGATTGAAGCTGACTCACGCACCCTCTGGGCCCACTGCTGGTGCCCTTTATTACAAG atgataaattcatacatcctatgtgtgagttttgctacatttttttttagTTATTAGACCTGATGCATACCCTGCACACACGTGCTGCCTCTGTCTATAGTTCATGGGCAGAGGAGCAACGCCACCTTGAAGGGGGTGGACAGAAGATTGGAGCTGATTCTCACACCCTCTGGGCCCACTGCTGGTGCCCTTTATCACGAGgtgtgtcaaattggaggtgctagcaggtgcaggagaaaggctgtccaact Alignment from Pairagon TTGCTAGACCTGATGCATACCCTGCACACACGGGCAGCCTCTATCTACAGCTCATGGGCAGAGGAGCAACGCCACCTGGAGGGAGGTGGCCAGAAGATTGAAGCTGACTCACGCACCCTCTGGGCCCACTGCTGGTGCCCTTTATTACAAG atgataaattcatacatcctatgtgtgagttttgctacatttttttttagTTATTAGACCTGATGCATACCCTGCACACACGTGCTGCCTCTGTCTATAGTTCATGGGCAGAGGAGCAACGCCACCTTGAAGGGGGTGGACAGAAGATTGGAGCTGATTCTCACACCCTCTGGGCCCACTGCTGGTGCCCTTTATCACGAGgtgtgtcaaattggaggtgctagcaggtgcaggagaaaggctgtccaact Alignment from Exonerate_protein2genome TTGCTAGACCTGATGCATACCCTGCACACACGGGCAGCCTCTATCTACAGCTCATGGGCAGAGGAGCAACGCCACCTGGAGGGAGGTGGCCAGAAGATTGAAGCTGACTCACGCACCCTCTGGGCCCACTGCTGGTGCCCTTTATTACAAG atgataaattcatacatcctatgtgtgagttttgctacatttttttttagTTATTAGACCTGATGCATACCCTGCACACACGTGCTGCCTCTGTCTATAGTTCATGGGCAGAGGAGCAACGCCACCTTGAAGGGGGTGGACAGAAGATTGGAGCTGATTCTCACACCCTCTGGGCCCACTGCTGGTGCCCTTTATCACGAGgtgtgtcaaattggaggtgctagcaggtgcaggagaaaggctgtccaact Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TTGCTAGACCTGATGCATACCCTGCACACACGGGCAGCCTCTATCTACAGCTCATGGGCAGAGGAGCAACGCCACCTGGAGGGAGGTGGCCAGAAGATTGAAGCTGACTCACGCACCCTCTGGGCCCACTGCTGGTGCCCTTTATTACAAG atgataaattcatacatcctatgtgtgagttttgctacatttttttttagTTATTAGACCTGATGCATACCCTGCACACACGTGCTGCCTCTGTCTATAGTTCATGGGCAGAGGAGCAACGCCACCTTGAAGGGGGTGGACAGAAGATTGGAGCTGATTCTCACACCCTCTGGGCCCACTGCTGGTGCCCTTTATCACGAGgtgtgtcaaattggaggtgctagcaggtgcaggagaaaggctgtccaact #### Gbf1_ID9815_34 --> 2 - 0 Original Alignment gaATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG cacacttggtgactttcacaattgcttcagtgtccttcatttttccacaggaATTGCTTGCTTATGCTGTGATGCTCGACGCCAGGTGCGGATGCAGGCCTTGACATATCTCCAACATGCACTTCTTGTGCCCGACCTGCAGAAACTGGATGCCCTGGAGTGGGAGTCTTGTTCAAACAAGgtgattctcactcataatagatgctggttcacaacatacaccccaaaggg Alignment from CESAR gaATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG cacacttggtgactttcacaattgcttcagtgtccttcatttttccacaggaATTGCTTGCTTATGCTGTGATGCTCGACGCCAGGTGCGGATGCAGGCCTTGACATATCTCCAACATGCACTTCTTGTGCCCGACCTGCAGAAACTGGATGCCCTGGAGTGGGAGTCTTGTTCAAACAAGgtgattctcactcataatagatgctggttcacaacatacaccccaaaggg Alignment from Spaln_aa2Genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG cacacttggtgactttcacaattgcttcagtgtccttcatttttccacagGAATTGCTTGCTTATGCTGTGATGCTCGACGCCAGGTGCGGATGCAGGCCTTGACATATCTCCAACATGCACTTCTTGTGCCCGACCTGCAGAAACTGGATGCCCTGGAGTGGGAGTCTTGTTCAAACAAGgtgattctcactcataatagatgctggttcacaacatacaccccaaaggg Alignment from Spaln_nt2Genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG cacacttggtgactttcacaattgcttcagtgtccttcatttttccacagGAATTGCTTGCTTATGCTGTGATGCTCGACGCCAGGTGCGGATGCAGGCCTTGACATATCTCCAACATGCACTTCTTGTGCCCGACCTGCAGAAACTGGATGCCCTGGAGTGGGAGTCTTGTTCAAACAAGgtgattctcactcataatagatgctggttcacaacatacaccccaaaggg Alignment from Pairagon GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG cacacttggtgactttcacaattgcttcagtgtccttcatttttccacagGAATTGCTTGCTTATGCTGTGATGCTCGACGCCAGGTGCGGATGCAGGCCTTGACATATCTCCAACATGCACTTCTTGTGCCCGACCTGCAGAAACTGGATGCCCTGGAGTGGGAGTCTTGTTCAAACAAGgtgattctcactcataatagatgctggttcacaacatacaccccaaaggg Alignment from Exonerate_protein2genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG cacacttggtgactttcacaattgcttcagtgtccttcatttttccacagGAATTGCTTGCTTATGCTGTGATGCTCGACGCCAGGTGCGGATGCAGGCCTTGACATATCTCCAACATGCACTTCTTGTGCCCGACCTGCAGAAACTGGATGCCCTGGAGTGGGAGTCTTGTTCAAACAAGgtgattctcactcataatagatgctggttcacaacatacaccccaaaggg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG cacacttggtgactttcacaattgcttcagtgtccttcatttttccacagGAATTGCTTGCTTATGCTGTGATGCTCGACGCCAGGTGCGGATGCAGGCCTTGACATATCTCCAACATGCACTTCTTGTGCCCGACCTGCAGAAACTGGATGCCCTGGAGTGGGAGTCTTGTTCAAACAAGgtgattctcactcataatagatgctggttcacaacatacaccccaaaggg #### Gbf1_ID9819_38 --> 2 - 1 Original Alignment acCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTg acatagtgtgttgcagctatgaggagacctggactcctctcttcccaaagacCCGATGCCTGCTGAAACACGTAGTCAGGAGCCT---GCATCCACTCACCTGATCCCTGCAGCTGGTGAGCCCAGGATGCCTGGCCATGCACCCCTCCCAGAGATACCCTCAGAAATGGGTGTTTGTggtatgttaccctcagcccattacatgtgtaaacaactgcattcacacata Alignment from CESAR acCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTg acatagtgtgttgcagctatgaggagacctggactcctctcttcccaaagacCCGATGCCTGCTGAAACACGTAGTCAGGAGCCT---GCATCCACTCACCTGATCCCTGCAGCTGGTGAGCCCAGGATGCCTGGCCATGCACCCCTCCCAGAGATACCCTCAGAAATGGGTGTTTGTggtatgttaccctcagcccattacatgtgtaaacaactgcattcacacata Alignment from Spaln_aa2Genome ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG acatagtgtgttgcagctatgaggagacctggactcctctcttcccaaagACCCGATGCCTGCTGAAACACGTAGTCAGGAGCCT---GCATCCACTCACCTGATCCCTGCAGCTGGTGAGCCCAGGATGCCTGGCCATGCACCCCTCCCAGAGATACCCTCAGAAATGGGTGTTTGTGgtatgttaccctcagcccattacatgtgtaaacaactgcattcacacata Alignment from Spaln_nt2Genome ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG acatagtgtgttgcagctatgaggagacctggactcctctcttcccaaagACCCGATGCCTGCTGAAACACGTAGTCAGGAGCCT---GCATCCACTCACCTGATCCCTGCAGCTGGTGAGCCCAGGATGCCTGGCCATGCACCCCTCCCAGAGATACCCTCAGAAATGGGTGTTTGTGgtatgttaccctcagcccattacatgtgtaaacaactgcattcacacata Alignment from Pairagon ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG acatagtgtgttgcagctatgaggagacctggactcctctcttcccaaagACCCGATGCCTGCTGAAACACGTAGTCAGGAGCCT---GCATCCACTCACCTGATCCCTGCAGCTGGTGAGCCCAGGATGCCTGGCCATGCACCCCTCCCAGAGATACCCTCAGAAATGGGTGTTTGTGgtatgttaccctcagcccattacatgtgtaaacaactgcattcacacata Alignment from Exonerate_protein2genome ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG acatagtgtgttgcagctatgaggagacctggactcctctcttcccaaagACCCGATGCCTGCTGAAACACGTAGTCAGGAGCCT---GCATCCACTCACCTGATCCCTGCAGCTGGTGAGCCCAGGATGCCTGGCCATGCACCCCTCCCAGAGATACCCTCAGAAATGGGTGTTTGTGgtatgttaccctcagcccattacatgtgtaaacaactgcattcacacata Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG acatagtgtgttgcagctatgaggagacctggactcctctcttcccaaagACCCGATGCCTGCTGAAACACGTAGTCAGGAGCCT---GCATCCACTCACCTGATCCCTGCAGCTGGTGAGCCCAGGATGCCTGGCCATGCACCCCTCCCAGAGATACCCTCAGAAATGGGTGTTTGTGgtatgttaccctcagcccattacatgtgtaaacaactgcattcacacata #### Gda_ID4900_5 --> 2 - 2 Original Alignment atAAATTTGGGCAGCGAGCATTTGTGGGCAAAGTATGCATGGATTTGAATGATACTGTTCCAGAATACAAGGAGACCACCGAGGAGTCAGTCAAGGAGACAGAGag ctcctggaacctctgcttactacatgaactccatcctcctttctgcacagatAAATTTGGTCAGCGGGCATTCGTGGGCAAGGTATGTATGGATCTTAATGACACTGTCCTAGAGTACAAGGAAACCAGTGAGGAGTCAGTCAAGGAGACTGAGaggtaagagatctgagttgagaccacataaccacataatgtgccccagtcta Alignment from CESAR atAAATTTGGGCAGCGAGCATTTGTGGGCAAAGTATGCATGGATTTGAATGATACTGTTCCAGAATACAAGGAGACCACCGAGGAGTCAGTCAAGGAGACAGAGag ctcctggaacctctgcttactacatgaactccatcctcctttctgcacagatAAATTTGGTCAGCGGGCATTCGTGGGCAAGGTATGTATGGATCTTAATGACACTGTCCTAGAGTACAAGGAAACCAGTGAGGAGTCAGTCAAGGAGACTGAGaggtaagagatctgagttgagaccacataaccacataatgtgccccagtcta Alignment from Spaln_aa2Genome ATAAATTTGGGCAGCGAGCATTTGTGGGCAAAGTATGCATGGATTTGAATGATACTGTTCCAGAATACAAGGAGACCACCGAGGAGTCAGTCAAGGAGACAGAGAG ctcctggaacctctgcttactacatgaactccatcctcctttctgcacagATAAATTTGGTCAGCGGGCATTCGTGGGCAAGGTATGTATGGATCTTAATGACACTGTCCTAGAGTACAAGGAAACCAGTGAGGAGTCAGTCAAGGAGACTGAGAGgtaagagatctgagttgagaccacataaccacataatgtgccccagtcta Alignment from Spaln_nt2Genome ATAAATTTGGGCAGCGAGCATTTGTGGGCAAAGTATGCATGGATTTGAATGATACTGTTCCAGAATACAAGGAGACCACCGAGGAGTCAGTCAAGGAGACAGAGAG ctcctggaacctctgcttactacatgaactccatcctcctttctgcacagATAAATTTGGTCAGCGGGCATTCGTGGGCAAGGTATGTATGGATCTTAATGACACTGTCCTAGAGTACAAGGAAACCAGTGAGGAGTCAGTCAAGGAGACTGAGAGgtaagagatctgagttgagaccacataaccacataatgtgccccagtcta Alignment from Pairagon ATAAATTTGGGCAGCGAGCATTTGTGGGCAAAGTATGCATGGATTTGAATGATACTGTTCCAGAATACAAGGAGACCACCGAGGAGTCAGTCAAGGAGACAGAGAG ctcctggaacctctgcttactacatgaactccatcctcctttctgcacagATAAATTTGGTCAGCGGGCATTCGTGGGCAAGGTATGTATGGATCTTAATGACACTGTCCTAGAGTACAAGGAAACCAGTGAGGAGTCAGTCAAGGAGACTGAGAGgtaagagatctgagttgagaccacataaccacataatgtgccccagtcta Alignment from Exonerate_protein2genome TACAGATAAATTTGGGCAGCGAGCATTTGTGGGCAAAGTATGCATGGATTTGAATGATACTGTTCCAGAATACAAGGAGACCACCGAGGAGTCAGTCAAGGAGACAGAGAG ctcctggaacctctgcttactacatgaactccatcctcctttctgCACAGATAAATTTGGTCAGCGGGCATTCGTGGGCAAGGTATGTATGGATCTTAATGACACTGTCCTAGAGTACAAGGAAACCAGTGAGGAGTCAGTCAAGGAGACTGAGAGgtaagagatctgagttgagaccacataaccacataatgtgccccagtcta Alignment from Exonerate_coding2genome TACAGATAAATTTGGGCAGCGAGCATTTGTGGGCAAAGTATGCATGGATTTGAATGATACTGTTCCAGAATACAAGGAGACCACCGAGGAGTCAGTCAAGGAGACAGAGAG ctcctggaacctctgcttactacatgaactccatcctcctttctgCACAGATAAATTTGGTCAGCGGGCATTCGTGGGCAAGGTATGTATGGATCTTAATGACACTGTCCTAGAGTACAAGGAAACCAGTGAGGAGTCAGTCAAGGAGACTGAGAGgtaagagatctgagttgagaccacataaccacataatgtgccccagtcta Alignment from GeneWise ATAAATTTGGGCAGCGAGCATTTGTGGGCAAAGTATGCATGGATTTGAATGATACTGTTCCAGAATACAAGGAGACCACCGAGGAGTCAGTCAAGGAGACAGAGAG ctcctggaacctctgcttactacatgaactccatcctcctttctgcacagATAAATTTGGTCAGCGGGCATTCGTGGGCAAGGTATGTATGGATCTTAATGACACTGTCCTAGAGTACAAGGAAACCAGTGAGGAGTCAGTCAAGGAGACTGAGAGgtaagagatctgagttgagaccacataaccacataatgtgccccagtcta #### Gda_ID4901_4 --> 0 - 1 Original Alignment AGGAGAACACTGAAGAACGGCACCACCACGGCTTGCTACTTTGGAACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTACAg atggattagctgattaaataactttagccacccacagctttctcccgcagAGGAGAACACTCAATAATGGTACAACAACAGCTTGCTACTTTGGTACCTTACATACGGCCCCATCCCTACTGCTTGCA---ATCATGggtgagacattaagttctcaaattggtgactaaatggcgttgtagtgctcc Alignment from CESAR AGGAGAACACTGAAGAACGGCACCACCACGGCTTGCTACTTTGGAACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTACAg atggattagctgattaaataactttagccacccacagctttctcccgcagAGGAGAACACTCAATAATGGTACAACAACAGCTTGCTACTTTGGTACCTTACATACGGCCCCATCCCTACTGCTTGCA---ATCATGggtgagacattaagttctcaaattggtgactaaatggcgttgtagtgctcc Alignment from Spaln_aa2Genome AGGAGAACACTGAAGAACGGCACCACCACGGCTTGCTACTTTGGAACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTACAG atggattagctgattaaataactttagccacccacagctttctcccgcagAGGAGAACACTCAATAATGGTACAACAACAGCTTGCTACTTTGGTACCTTACATACGGCCCCATCCCTACTGCTTGCA---ATCATGGgtgagacattaagttctcaaattggtgactaaatggcgttgtagtgctcc Alignment from Spaln_nt2Genome AGGAGAACACTGAAGAACGGCACCACCACGGCTTGCTACTTTGGAACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTACAG atggattagctgattaaataactttagccacccacagctttctcccgcagAGGAGAACACTCAATAATGGTACAACAACAGCTTGCTACTTTGGTACCTTACATACGGCCCCATCCCTACTGCTTGC---AATCATGGgtgagacattaagttctcaaattggtgactaaatggcgttgtagtgctcc Alignment from Pairagon AGGAGAACACTGAAGAACGGCACCACCACGGCTTGCTACTTTGGAACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTACAG atggattagctgattaaataactttagccacccacagctttctcccgcagAGGAGAACACTCAATAATGGTACAACAACAGCTTGCTACTTTGGTACCTTACATACGGCCCCATCCCTACTGCTTGC---AATCATGGgtgagacattaagttctcaaattggtgactaaatggcgttgtagtgctcc Alignment from Exonerate_protein2genome AGGAGAACACTGAAGAACGGCACCACCACGGCTTGCTACTTTGGAACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTACAG atggattagctgattaaataactttagccacccacagctttctcccgcagAGGAGAACACTCAATAATGGTACAACAACAGCTTGCTACTTTGGTACCTTACATACGGCCCCATCCCTACTGCTTGCA---ATCATGGgtgagacattaagttctcaaattggtgactaaatggcgttgtagtgctcc Alignment from Exonerate_coding2genome AGGAGAACACTGAAGAACGGCACCACCACGGCTTGCTACTTTGGAACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTACAG atggattagctgattaaataactttagccacccacagctttctcccgcagAGGAGAACACTCAATAATGGTACAACAACAGCTTGCTACTTTGGTACCTTACATACGGCCCCATCCCTACTGCTTGCA---ATCATGGgtgagacattaagttctcaaattggtgactaaatggcgttgtagtgctcc Alignment from GeneWise AGGAGAACACTGAAGAACGGCACCACCACGGCTTGCTACTTTGGAACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTACAG atggattagctgattaaataactttagccacccacagctttctcccgcagAGGAGAACACTCAATAATGGTACAACAACAGCTTGCTACTTTGGTACCTTACATACGGCCCCATCCCTACTGCTTGCA---ATCATGGgtgagacattaagttctcaaattggtgactaaatggcgttgtagtgctcc #### Gfra1_ID12582_8 --> 0 - 0 Original Alignment GCACAGAAGCTGAAATCCAATGTATCGGGCAGTACACATCTCTGTCTTTCTGAT tccatcctattaggttaagattcctcctagctcacctacccctccctcagGCACAGAAGCTCAAATCCAATGTCTTAGGCAGCACCCATCTCTGCTTATTTGATgtaaggtactgtctttcttaactcctgtaactctttatggtcaatttgat Alignment from CESAR GCACAGAAGCTGAAATCCAATGTATCGGGCAGTACACATCTCTGTCTTTCTGAT tccatcctattaggttaagattcctcctagctcacctacccctccctcagGCACAGAAGCTCAAATCCAATGTCTTAGGCAGCACCCATCTCTGCTTATTTGATgtaaggtactgtctttcttaactcctgtaactctttatggtcaatttgat Alignment from Spaln_aa2Genome GCACAGAAGCTGAAATCCAATGTATCGGGCAGTACACATCTCTGTCTTTCTGAT tccatcctattaggttaagattcctcctagctcacctacccctccctcagGCACAGAAGCTCAAATCCAATGTCTTAGGCAGCACCCATCTCTGCTTATTTGATgtaaggtactgtctttcttaactcctgtaactctttatggtcaatttgat Alignment from Spaln_nt2Genome GCACAGAAGCTGAAATCCAATGTATCGGGCAGTACACATCTCTGTCTTTCTGAT tccatcctattaggttaagattcctcctagctcacctacccctccctcagGCACAGAAGCTCAAATCCAATGTCTTAGGCAGCACCCATCTCTGCTTATTTGATgtaaggtactgtctttcttaactcctgtaactctttatggtcaatttgat Alignment from Pairagon GCACAGAAGCTGAAATCCAATGTATCGGGCAGTACACATCTCTGTCTTTCTGAT tccatcctattaggttaagattcctcctagctcacctacccctccctcagGCACAGAAGCTCAAATCCAATGTCTTAGGCAGCACCCATCTCTGCTTATTTGATgtaaggtactgtctttcttaactcctgtaactctttatggtcaatttgat Alignment from Exonerate_protein2genome GCACAGAAGCTGAAATCCAATGTATCGGGCAGTACACATCTCTGTCTTTCTGAT tccatcctattaggttaagattcctcctagctcacctacccctccctcagGCACAGAAGCTCAAATCCAATGTCTTAGGCAGCACCCATCTCTGCTTATTTGATgtaaggtactgtctttcttaactcctgtaactctttatggtcaatttgat Alignment from Exonerate_coding2genome GCACAGAAGCTGAAATCCAATGTATCGGGCAGTACACATCTCTGTCTTTCTGATAATGATTAC tccatcctattaggttaagattcctcctagctcacctacccctccctcagGCACAGAAGCTCAAATCCAATGTCTTAGGCAGCACCCATCTCTGCTTATTTGATGTAAGGTACtgtctttcttaactcctgtaactctttatggtcaatttgat Alignment from GeneWise GCACAGAAGCTGAAATCCAATGTATCGGGCAGTACACATCTCTGTCTTTCTGAT tccatcctattaggttaagattcctcctagctcacctacccctccctcagGCACAGAAGCTCAAATCCAATGTCTTAGGCAGCACCCATCTCTGCTTATTTGATgtaaggtactgtctttcttaactcctgtaactctttatggtcaatttgat #### Gfra1_ID12598_7 --> 2 - 0 Original Alignment aaAATGCAATTCAAGCCTTTGGCAATGGCTCGGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACCACTGCCACGACTACCACTGCCTTCCGGATCAAGAACAAGCCTCTAGGGCCAGCAGGCTCTGAGAATGAGATTCCCACACACGTTTTACCACCGTGTGCTAATTTGCAG tctgagatgggttgacccttgaagggaaatgtgtattctcctctctttagaaAATGCAATTCAAGCGTTTGGCAATGGCTCAGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACGACTGCCACAACTATCACTGCCTTCCGAATCAAGAACAAGCCTCTAGGGCCAGCAGGTTCTGAGAATGAGATGCCCACACACATTCTACCACCATGTGCTAATTTGCAGgtaagtaatggttgttctgtatcaatgacaaactcacaggtagaccagaa Alignment from CESAR aaAATGCAATTCAAGCCTTTGGCAATGGCTCGGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACCACTGCCACGACTACCACTGCCTTCCGGATCAAGAACAAGCCTCTAGGGCCAGCAGGCTCTGAGAATGAGATTCCCACACACGTTTTACCACCGTGTGCTAATTTGCAG tctgagatgggttgacccttgaagggaaatgtgtattctcctctctttagaaAATGCAATTCAAGCGTTTGGCAATGGCTCAGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACGACTGCCACAACTATCACTGCCTTCCGAATCAAGAACAAGCCTCTAGGGCCAGCAGGTTCTGAGAATGAGATGCCCACACACATTCTACCACCATGTGCTAATTTGCAGgtaagtaatggttgttctgtatcaatgacaaactcacaggtagaccagaa Alignment from Spaln_aa2Genome AAAATGCAATTCAAGCCTTTGGCAATGGCTCGGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACCACTGCCACGACTACCACTGCCTTCCGGATCAAGAACAAGCCTCTAGGGCCAGCAGGCTCTGAGAATGAGATTCCCACACACGTTTTACCACCGTGTGCTAATTTGCAG tctgagatgggttgacccttgaagggaaatgtgtattctcctctctttagAAAATGCAATTCAAGCGTTTGGCAATGGCTCAGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACGACTGCCACAACTATCACTGCCTTCCGAATCAAGAACAAGCCTCTAGGGCCAGCAGGTTCTGAGAATGAGATGCCCACACACATTCTACCACCATGTGCTAATTTGCAGgtaagtaatggttgttctgtatcaatgacaaactcacaggtagaccagaa Alignment from Spaln_nt2Genome AAAATGCAATTCAAGCCTTTGGCAATGGCTCGGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACCACTGCCACGACTACCACTGCCTTCCGGATCAAGAACAAGCCTCTAGGGCCAGCAGGCTCTGAGAATGAGATTCCCACACACGTTTTACCACCGTGTGCTAATTTGCAG tctgagatgggttgacccttgaagggaaatgtgtattctcctctctttagAAAATGCAATTCAAGCGTTTGGCAATGGCTCAGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACGACTGCCACAACTATCACTGCCTTCCGAATCAAGAACAAGCCTCTAGGGCCAGCAGGTTCTGAGAATGAGATGCCCACACACATTCTACCACCATGTGCTAATTTGCAGgtaagtaatggttgttctgtatcaatgacaaactcacaggtagaccagaa Alignment from Pairagon AAAATGCAATTCAAGCCTTTGGCAATGGCTCGGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACCACTGCCACGACTACCACTGCCTTCCGGATCAAGAACAAGCCTCTAGGGCCAGCAGGCTCTGAGAATGAGATTCCCACACACGTTTTACCACCGTGTGCTAATTTGCAG tctgagatgggttgacccttgaagggaaatgtgtattctcctctctttagAAAATGCAATTCAAGCGTTTGGCAATGGCTCAGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACGACTGCCACAACTATCACTGCCTTCCGAATCAAGAACAAGCCTCTAGGGCCAGCAGGTTCTGAGAATGAGATGCCCACACACATTCTACCACCATGTGCTAATTTGCAGgtaagtaatggttgttctgtatcaatgacaaactcacaggtagaccagaa Alignment from Exonerate_protein2genome AAAATGCAATTCAAGCCTTTGGCAATGGCTCGGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACCACTGCCACGACTACCACTGCCTTCCGGATCAAGAACAAGCCTCTAGGGCCAGCAGGCTCTGAGAATGAGATTCCCACACACGTTTTACCACCGTGTGCTAATTTGCAG tctgagatgggttgacccttgaagggaaatgtgtattctcctctctttagAAAATGCAATTCAAGCGTTTGGCAATGGCTCAGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACGACTGCCACAACTATCACTGCCTTCCGAATCAAGAACAAGCCTCTAGGGCCAGCAGGTTCTGAGAATGAGATGCCCACACACATTCTACCACCATGTGCTAATTTGCAGgtaagtaatggttgttctgtatcaatgacaaactcacaggtagaccagaa Alignment from Exonerate_coding2genome AAAATGCAATTCAAGCCTTTGGCAATGGCTCGGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACCACTGCCACGACTACCACTGCCTTCCGGATCAAGAACAAGCCTCTAGGGCCAGCAGGCTCTGAGAATGAGATTCCCACACACGTTTTACCACCGTGTGCTAATTTGCAG tctgagatgggttgacccttgaagggaaatgtgtattctcctctctttagAAAATGCAATTCAAGCGTTTGGCAATGGCTCAGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACGACTGCCACAACTATCACTGCCTTCCGAATCAAGAACAAGCCTCTAGGGCCAGCAGGTTCTGAGAATGAGATGCCCACACACATTCTACCACCATGTGCTAATTTGCAGgtaagtaatggttgttctgtatcaatgacaaactcacaggtagaccagaa Alignment from GeneWise AAAATGCAATTCAAGCCTTTGGCAATGGCTCGGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACCACTGCCACGACTACCACTGCCTTCCGGATCAAGAACAAGCCTCTAGGGCCAGCAGGCTCTGAGAATGAGATTCCCACACACGTTTTACCACCGTGTGCTAATTTGCAG tctgagatgggttgacccttgaagggaaatgtgtattctcctctctttagAAAATGCAATTCAAGCGTTTGGCAATGGCTCAGATGTGACCATGTGGCAGCCAGCCCCCCCAGTCCAGACCACGACTGCCACAACTATCACTGCCTTCCGAATCAAGAACAAGCCTCTAGGGCCAGCAGGTTCTGAGAATGAGATGCCCACACACATTCTACCACCATGTGCTAATTTGCAGgtaagtaatggttgttctgtatcaatgacaaactcacaggtagaccagaa #### Gfra1_ID12679_3 --> 2 - 1 Original Alignment gaAATGACCTACTGGAAGATTCCCCATATGAGCCGGTTAACAGCAGGCTGTCAGATATATTCCGGGCAGTCCCGTTCATATCAg caccgccaaaccaactcaactctgtgtgtgtcaccctgtctctttcctaggaAATGACTTGCTGGAAGATTCCCCATATGAGCCAGTTAATAGCAGGGTGTCAGATATTTTTCGTGCAGTCCCAATTATATCCggtgagaaatacgggtgaggccatctatgtccttcacacatctgatccagc Alignment from CESAR gaAATGACCTACTGGAAGATTCCCCATATGAGCCGGTTAACAGCAGGCTGTCAGATATATTCCGGGCAGTCCCGTTCATATCAg caccgccaaaccaactcaactctgtgtgtgtcaccctgtctctttcctaggaAATGACTTGCTGGAAGATTCCCCATATGAGCCAGTTAATAGCAGGGTGTCAGATATTTTTCGTGCAGTCCCAATTATATCCggtgagaaatacgggtgaggccatctatgtccttcacacatctgatccagc Alignment from Spaln_aa2Genome GAAATGACCTACTGGAAGATTCCCCATATGAGCCGGTTAACAGCAGGCTGTCAGATATATTCCGGGCAGTCCCGTTCATATCAG caccgccaaaccaactcaactctgtgtgtgtcaccctgtctctttcctagGAAATGACTTGCTGGAAGATTCCCCATATGAGCCAGTTAATAGCAGGGTGTCAGATATTTTTCGTGCAGTCCCAATTATATCCGgtgagaaatacgggtgaggccatctatgtccttcacacatctgatccagc Alignment from Spaln_nt2Genome GAAATGACCTACTGGAAGATTCCCCATATGAGCCGGTTAACAGCAGGCTGTCAGATATATTCCGGGCAGTCCCGTTCATATCAG caccgccaaaccaactcaactctgtgtgtgtcaccctgtctctttcctagGAAATGACTTGCTGGAAGATTCCCCATATGAGCCAGTTAATAGCAGGGTGTCAGATATTTTTCGTGCAGTCCCAATTATATCCGgtgagaaatacgggtgaggccatctatgtccttcacacatctgatccagc Alignment from Pairagon GAAATGACCTACTGGAAGATTCCCCATATGAGCCGGTTAACAGCAGGCTGTCAGATATATTCCGGGCAGTCCCGTTCATATCAG caccgccaaaccaactcaactctgtgtgtgtcaccctgtctctttcctagGAAATGACTTGCTGGAAGATTCCCCATATGAGCCAGTTAATAGCAGGGTGTCAGATATTTTTCGTGCAGTCCCAATTATATCCGgtgagaaatacgggtgaggccatctatgtccttcacacatctgatccagc Alignment from Exonerate_protein2genome GAAATGACCTACTGGAAGATTCCCCATATGAGCCGGTTAACAGCAGGCTGTCAGATATATTCCGGGCAGTCCCGTTCATATCAG caccgccaaaccaactcaactctgtgtgtgtcaccctgtctctttcctagGAAATGACTTGCTGGAAGATTCCCCATATGAGCCAGTTAATAGCAGGGTGTCAGATATTTTTCGTGCAGTCCCAATTATATCCGgtgagaaatacgggtgaggccatctatgtccttcacacatctgatccagc Alignment from Exonerate_coding2genome GAAATGACCTACTGGAAGATTCCCCATATGAGCCGGTTAACAGCAGGCTGTCAGATATATTCCGGGCAGTCCCGTTCATATCAG caccgccaaaccaactcaactctgtgtgtgtcaccctgtctctttcctagGAAATGACTTGCTGGAAGATTCCCCATATGAGCCAGTTAATAGCAGGGTGTCAGATATTTTTCGTGCAGTCCCAATTATATCCGgtgagaaatacgggtgaggccatctatgtccttcacacatctgatccagc Alignment from GeneWise GAAATGACCTACTGGAAGATTCCCCATATGAGCCGGTTAACAGCAGGCTGTCAGATATATTCCGGGCAGTCCCGTTCATATCAG caccgccaaaccaactcaactctgtgtgtgtcaccctgtctctttcctagGAAATGACTTGCTGGAAGATTCCCCATATGAGCCAGTTAATAGCAGGGTGTCAGATATTTTTCGTGCAGTCCCAATTATATCCGgtgagaaatacgggtgaggccatctatgtccttcacacatctgatccagc #### Gfra1_ID12683_2 --> 2 - 1 Original Alignment atTTGCTGATGTCGGCCGAGGTGAGTGGTGGGGACCGCCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGCGTGGCGGGCAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCTATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGg gaatccccagtactcagctgtatccaaccccaaccgttctctctacccagatTTACTGATGTCAGCTGAGGTTAGAGGTGGGGATCACTTGGACTGTGTGAAAGCAAGTGATCACTGCCTCAAGAAACAGAGCTGCAGTACCAAACACCGTACGCTTAGGCAGTGTGTCGCAGGTAAAGAGACCAACTCCAGCTTGACTTCCAGTCTTGAGACTAAGGATGAGTGCCGCAGTACAATGGAGGCCTTGAAGCAAAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGCCTGCGAATCTACTGGAGCATGTACCAGAGCCTGCAGggtaagccaccagaccccccaccaccccaagcactgcctggcaaccagggg Alignment from CESAR atTTGCTGATGTCGGCCGAGGTGAGTGGTGGGGACCGCCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGCGTGGCGGGCAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCTATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGg gaatccccagtactcagctgtatccaaccccaaccgttctctctacccagatTTACTGATGTCAGCTGAGGTTAGAGGTGGGGATCACTTGGACTGTGTGAAAGCAAGTGATCACTGCCTCAAGAAACAGAGCTGCAGTACCAAACACCGTACGCTTAGGCAGTGTGTCGCAGGTAAAGAGACCAACTCCAGCTTGACTTCCAGTCTTGAGACTAAGGATGAGTGCCGCAGTACAATGGAGGCCTTGAAGCAAAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGCCTGCGAATCTACTGGAGCATGTACCAGAGCCTGCAGggtaagccaccagaccccccaccaccccaagcactgcctggcaaccagggg Alignment from Spaln_aa2Genome ATTTGCTGATGTCGGCCGAGGTGAGTGGTGGGGACCGCCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGCGTGGCGGGCAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCTATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGG gaatccccagtactcagctgtatccaaccccaaccgttctctctacccagATTTACTGATGTCAGCTGAGGTTAGAGGTGGGGATCACTTGGACTGTGTGAAAGCAAGTGATCACTGCCTCAAGAAACAGAGCTGCAGTACCAAACACCGTACGCTTAGGCAGTGTGTCGCAGGTAAAGAGACCAACTCCAGCTTGACTTCCAGTCTTGAGACTAAGGATGAGTGCCGCAGTACAATGGAGGCCTTGAAGCAAAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGCCTGCGAATCTACTGGAGCATGTACCAGAGCCTGCAGGgtaagccaccagaccccccaccaccccaagcactgcctggcaaccagggg Alignment from Spaln_nt2Genome ATTTGCTGATGTCGGCCGAGGTGAGTGGTGGGGACCGCCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGCGTGGCGGGCAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCTATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGG gaatccccagtactcagctgtatccaaccccaaccgttctctctacccagATTTACTGATGTCAGCTGAGGTTAGAGGTGGGGATCACTTGGACTGTGTGAAAGCAAGTGATCACTGCCTCAAGAAACAGAGCTGCAGTACCAAACACCGTACGCTTAGGCAGTGTGTCGCAGGTAAAGAGACCAACTCCAGCTTGACTTCCAGTCTTGAGACTAAGGATGAGTGCCGCAGTACAATGGAGGCCTTGAAGCAAAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGCCTGCGAATCTACTGGAGCATGTACCAGAGCCTGCAGGgtaagccaccagaccccccaccaccccaagcactgcctggcaaccagggg Alignment from Pairagon ATTTGCTGATGTCGGCCGAGGTGAGTGGTGGGGACCGCCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGCGTGGCGGGCAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCTATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGG gaatccccagtactcagctgtatccaaccccaaccgttctctctacccagATTTACTGATGTCAGCTGAGGTTAGAGGTGGGGATCACTTGGACTGTGTGAAAGCAAGTGATCACTGCCTCAAGAAACAGAGCTGCAGTACCAAACACCGTACGCTTAGGCAGTGTGTCGCAGGTAAAGAGACCAACTCCAGCTTGACTTCCAGTCTTGAGACTAAGGATGAGTGCCGCAGTACAATGGAGGCCTTGAAGCAAAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGCCTGCGAATCTACTGGAGCATGTACCAGAGCCTGCAGGgtaagccaccagaccccccaccaccccaagcactgcctggcaaccagggg Alignment from Exonerate_protein2genome ATTTGCTGATGTCGGCCGAGGTGAGTGGTGGGGACCGCCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGCGTGGCGGGCAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCTATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGG gaatccccagtactcagctgtatccaaccccaaccgttctctctacccagATTTACTGATGTCAGCTGAGGTTAGAGGTGGGGATCACTTGGACTGTGTGAAAGCAAGTGATCACTGCCTCAAGAAACAGAGCTGCAGTACCAAACACCGTACGCTTAGGCAGTGTGTCGCAGGTAAAGAGACCAACTCCAGCTTGACTTCCAGTCTTGAGACTAAGGATGAGTGCCGCAGTACAATGGAGGCCTTGAAGCAAAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGCCTGCGAATCTACTGGAGCATGTACCAGAGCCTGCAGGgtaagccaccagaccccccaccaccccaagcactgcctggcaaccagggg Alignment from Exonerate_coding2genome ATTTGCTGATGTCGGCCGAGGTGAGTGGTGGGGACCGCCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGCGTGGCGGGCAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCTATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGG gaatccccagtactcagctgtatccaaccccaaccgttctctctacccagATTTACTGATGTCAGCTGAGGTTAGAGGTGGGGATCACTTGGACTGTGTGAAAGCAAGTGATCACTGCCTCAAGAAACAGAGCTGCAGTACCAAACACCGTACGCTTAGGCAGTGTGTCGCAGGTAAAGAGACCAACTCCAGCTTGACTTCCAGTCTTGAGACTAAGGATGAGTGCCGCAGTACAATGGAGGCCTTGAAGCAAAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGCCTGCGAATCTACTGGAGCATGTACCAGAGCCTGCAGGgtaagccaccagaccccccaccaccccaagcactgcctggcaaccagggg Alignment from GeneWise ATTTGCTGATGTCGGCCGAGGTGAGTGGTGGGGACCGCCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGCGTGGCGGGCAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCTATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGG gaatccccagtactcagctgtatccaaccccaaccgttctctctacccagATTTACTGATGTCAGCTGAGGTTAGAGGTGGGGATCACTTGGACTGTGTGAAAGCAAGTGATCACTGCCTCAAGAAACAGAGCTGCAGTACCAAACACCGTACGCTTAGGCAGTGTGTCGCAGGTAAAGAGACCAACTCCAGCTTGACTTCCAGTCTTGAGACTAAGGATGAGTGCCGCAGTACAATGGAGGCCTTGAAGCAAAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGCCTGCGAATCTACTGGAGCATGTACCAGAGCCTGCAGGgtaagccaccagaccccccaccaccccaagcactgcctggcaaccagggg #### Gif_ID3279_3 --> 2 - 1 Original Alignment acCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGACCCTGGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAa tcctccctctgtcttgtgtagtttgtctcctcccctcccccactttgcagacTTGACAAGTGGGCAGCTGGCCCTCACTGTTATGGCTTTCACATCCTCTTGCAGAGATCCAGGTAGTAAGGTTTCTACTCTG---AGGAAAATGGAAAACTGGTCACCTTCAagtacgtgtggcttgtgggggcattgagagggagagagtgtcatgcatgaa Alignment from CESAR acCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGACCCTGGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAa tcctccctctgtcttgtgtagtttgtctcctcccctcccccactttgcagacTTGACAAGTGGGCAGCTGGCCCTCACTGTTATGGCTTTCACATCCTCTTGCAGAGATCCAGGTAGTAAGGTTTCTACT---CTGAGGAAAATGGAAAACTGGTCACCTTCAagtacgtgtggcttgtgggggcattgagagggagagagtgtcatgcatgaa Alignment from Spaln_aa2Genome ACCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGACCCTGGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAA tcctccctctgtcttgtgtagtttgtctcctcccctcccccactttgcagACTTGACAAGTGGGCAGCTGGCCCTCACTGTTATGGCTTTCACATCCTCTTGCAGAGATCCAGGTAGTAAGGTTTCTACTCTGAGGAAA---ATGGAAAACTGGTCACCTTCAAgtacgtgtggcttgtgggggcattgagagggagagagtgtcatgcatgaa Alignment from Spaln_nt2Genome ACCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGACCCTGGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAA tcctccctctgtcttgtgtagtttgtctcctcccctcccccactttgcagACTTGACAAGTGGGCAGCTGGCCCTCACTGTTATGGCTTTCACATCCTCTTGCAGAGATCCAGGTAGTAAGGTTTCTACTCT---GAGGAAAATGGAAAACTGGTCACCTTCAAgtacgtgtggcttgtgggggcattgagagggagagagtgtcatgcatgaa Alignment from Pairagon ACCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGACCCTGGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAA tcctccctctgtcttgtgtagtttgtctcctcccctcccccactttgcagACTTGACAAGTGGGCAGCTGGCCCTCACTGTTATGGCTTTCACATCCTCTTGCAGAGATCCAGGTAGTAAGGTTTCTACT---CTGAGGAAAATGGAAAACTGGTCACCTTCAAgtacgtgtggcttgtgggggcattgagagggagagagtgtcatgcatgaa Alignment from Exonerate_protein2genome ACCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGACCCTGGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAA tcctccctctgtcttgtgtagtttgtctcctcccctcccccactttgcagACTTGACAAGTGGGCAGCTGGCCCTCACTGTTATGGCTTTCACATCCTCTTGCAGAGATCCAGGTAGTAAGGTTTCTACT---CTGAGGAAAATGGAAAACTGGTCACCTTCAAgtacgtgtggcttgtgggggcattgagagggagagagtgtcatgcatgaa Alignment from Exonerate_coding2genome ACCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGACCCTGGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAA tcctccctctgtcttgtgtagtttgtctcctcccctcccccactttgcagACTTGACAAGTGGGCAGCTGGCCCTCACTGTTATGGCTTTCACATCCTCTTGCAGAGATCCAGGTAGTAAGGTTTCTACT---CTGAGGAAAATGGAAAACTGGTCACCTTCAAgtacgtgtggcttgtgggggcattgagagggagagagtgtcatgcatgaa Alignment from GeneWise ACCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGACCCTGGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAA tcctccctctgtcttgtgtagtttgtctcctcccctcccccactttgcagACTTGACAAGTGGGCAGCTGGCCCTCACTGTTATGGCTTTCACATCCTCTTGCAGAGATCCAGGTAGTAAGGTTTCTACTCTG---AGGAAAATGGAAAACTGGTCACCTTCAAgtacgtgtggcttgtgggggcattgagagggagagagtgtcatgcatgaa #### Gldc_ID6398_17 --> 0 - 0 Original Alignment GTCTGTCTCATTCCTAAGTCAGCACATGGAACGAATCCAGCAAGCGCTCACATGGCGGGCATGAAGATCCAGCCTGTGGAGGTGGACAGATACGGGAACATCGATGTGGCTCACCTCAAGGCCATG agtcttaaaaggtgcgtcatttatgatgttttgtgtttccaataattcagGTGTGTCTTATACCAAATTCAGCTCATGGAACAAATTCAGCTAGTGCTCATATGGCAGGCATGAAAATCCAGCCAGTGGTGGTTGACAGGCATGGGAACATTGATGTGGCTCACCTCATGGCCATGgtaagtcatggtaagggtcatcttcagtatcatctgacgctaaaatctta Alignment from CESAR GTCTGTCTCATTCCTAAGTCAGCACATGGAACGAATCCAGCAAGCGCTCACATGGCGGGCATGAAGATCCAGCCTGTGGAGGTGGACAGATACGGGAACATCGATGTGGCTCACCTCAAGGCCATG agtcttaaaaggtgcgtcatttatgatgttttgtgtttccaataattcagGTGTGTCTTATACCAAATTCAGCTCATGGAACAAATTCAGCTAGTGCTCATATGGCAGGCATGAAAATCCAGCCAGTGGTGGTTGACAGGCATGGGAACATTGATGTGGCTCACCTCATGGCCATGgtaagtcatggtaagggtcatcttcagtatcatctgacgctaaaatctta Alignment from Spaln_aa2Genome GTCTGTCTCATTCCTAAGTCAGCACATGGAACGAATCCAGCAAGCGCTCACATGGCGGGCATGAAGATCCAGCCTGTGGAGGTGGACAGATACGGGAACATCGATGTGGCTCACCTCAAGGCCATG agtcttaaaaggtgcgtcatttatgatgttttgtgtttccaataattcagGTGTGTCTTATACCAAATTCAGCTCATGGAACAAATTCAGCTAGTGCTCATATGGCAGGCATGAAAATCCAGCCAGTGGTGGTTGACAGGCATGGGAACATTGATGTGGCTCACCTCATGGCCATGgtaagtcatggtaagggtcatcttcagtatcatctgacgctaaaatctta Alignment from Spaln_nt2Genome GTCTGTCTCATTCCTAAGTCAGCACATGGAACGAATCCAGCAAGCGCTCACATGGCGGGCATGAAGATCCAGCCTGTGGAGGTGGACAGATACGGGAACATCGATGTGGCTCACCTCAAGGCCATG agtcttaaaaggtgcgtcatttatgatgttttgtgtttccaataattcagGTGTGTCTTATACCAAATTCAGCTCATGGAACAAATTCAGCTAGTGCTCATATGGCAGGCATGAAAATCCAGCCAGTGGTGGTTGACAGGCATGGGAACATTGATGTGGCTCACCTCATGGCCATGgtaagtcatggtaagggtcatcttcagtatcatctgacgctaaaatctta Alignment from Pairagon GTCTGTCTCATTCCTAAGTCAGCACATGGAACGAATCCAGCAAGCGCTCACATGGCGGGCATGAAGATCCAGCCTGTGGAGGTGGACAGATACGGGAACATCGATGTGGCTCACCTCAAGGCCATG agtcttaaaaggtgcgtcatttatgatgttttgtgtttccaataattcagGTGTGTCTTATACCAAATTCAGCTCATGGAACAAATTCAGCTAGTGCTCATATGGCAGGCATGAAAATCCAGCCAGTGGTGGTTGACAGGCATGGGAACATTGATGTGGCTCACCTCATGGCCATGgtaagtcatggtaagggtcatcttcagtatcatctgacgctaaaatctta Alignment from Exonerate_protein2genome GTCTGTCTCATTCCTAAGTCAGCACATGGAACGAATCCAGCAAGCGCTCACATGGCGGGCATGAAGATCCAGCCTGTGGAGGTGGACAGATACGGGAACATCGATGTGGCTCACCTCAAGGCCATG agtcttaaaaggtgcgtcatttatgatgttttgtgtttccaataattcagGTGTGTCTTATACCAAATTCAGCTCATGGAACAAATTCAGCTAGTGCTCATATGGCAGGCATGAAAATCCAGCCAGTGGTGGTTGACAGGCATGGGAACATTGATGTGGCTCACCTCATGGCCATGgtaagtcatggtaagggtcatcttcagtatcatctgacgctaaaatctta Alignment from Exonerate_coding2genome GTCTGTCTCATTCCTAAGTCAGCACATGGAACGAATCCAGCAAGCGCTCACATGGCGGGCATGAAGATCCAGCCTGTGGAGGTGGACAGATACGGGAACATCGATGTGGCTCACCTCAAGGCCATG agtcttaaaaggtgcgtcatttatgatgttttgtgtttccaataattcagGTGTGTCTTATACCAAATTCAGCTCATGGAACAAATTCAGCTAGTGCTCATATGGCAGGCATGAAAATCCAGCCAGTGGTGGTTGACAGGCATGGGAACATTGATGTGGCTCACCTCATGGCCATGgtaagtcatggtaagggtcatcttcagtatcatctgacgctaaaatctta Alignment from GeneWise GTCTGTCTCATTCCTAAGTCAGCACATGGAACGAATCCAGCAAGCGCTCACATGGCGGGCATGAAGATCCAGCCTGTGGAGGTGGACAGATACGGGAACATCGATGTGGCTCACCTCAAGGCCATG agtcttaaaaggtgcgtcatttatgatgttttgtgtttccaataattcagGTGTGTCTTATACCAAATTCAGCTCATGGAACAAATTCAGCTAGTGCTCATATGGCAGGCATGAAAATCCAGCCAGTGGTGGTTGACAGGCATGGGAACATTGATGTGGCTCACCTCATGGCCATGgtaagtcatggtaagggtcatcttcagtatcatctgacgctaaaatctta #### Gldc_ID6407_8 --> 1 - 0 Original Alignment gGATGCCACAGGGAAGGAAGTGTATCGCCTCGCTCTCCAGACCAGAGAACAACACATCCGGAGAGACAAAGCCACCAGCAACATCTGCACGGCTCAG agactcaaatcatatgtgtcctatctgaaacttccaagtcttgtctttaggGACGCTACCGGGAAGGAGGTATATCGCCTTGCTCTCCAAACCAGAGAGCAACACATCCAAAGAGACAAAGCCACTAGCAACATCTGCACAGCCCCAgtgtgagttcttattcctaagatggtctctgtgtctaagccaatgcaggt Alignment from CESAR gGATGCCACAGGGAAGGAAGTGTATCGCCTCGCTCTCCAGACCAGAGAACAACACATCCGGAGAGACAAAGCCACCAGCAACATCTGCACGGCTCAG agactcaaatcatatgtgtcctatctgaaacttccaagtcttgtctttaggGACGCTACCGGGAAGGAGGTATATCGCCTTGCTCTCCAAACCAGAGAGCAACACATCCAAAGAGACAAAGCCACTAGCAACATCTGCACAGCCCCAgtgtgagttcttattcctaagatggtctctgtgtctaagccaatgcaggt Alignment from Spaln_aa2Genome GGATGCCACAGGGAAGGAAGTGTATCGCCTCGCTCTCCAGACCAGAGAACAACACATCCGGAGAGACAAAGCCACCAGCAACATCTGCACGGCTCAG agactcaaatcatatgtgtcctatctgaaacttccaagtcttgtctttagGGACGCTACCGGGAAGGAGGTATATCGCCTTGCTCTCCAAACCAGAGAGCAACACATCCAAAGAGACAAAGCCACTAGCAACATCTGCACAGCCCCAgtgtgagttcttattcctaagatggtctctgtgtctaagccaatgcaggt Alignment from Spaln_nt2Genome GGATGCCACAGGGAAGGAAGTGTATCGCCTCGCTCTCCAGACCAGAGAACAACACATCCGGAGAGACAAAGCCACCAGCAACATCTGCACGGCTCAG agactcaaatcatatgtgtcctatctgaaacttccaagtcttgtctttagGGACGCTACCGGGAAGGAGGTATATCGCCTTGCTCTCCAAACCAGAGAGCAACACATCCAAAGAGACAAAGCCACTAGCAACATCTGCACAGCCCCAgtgtgagttcttattcctaagatggtctctgtgtctaagccaatgcaggt Alignment from Pairagon GGATGCCACAGGGAAGGAAGTGTATCGCCTCGCTCTCCAGACCAGAGAACAACACATCCGGAGAGACAAAGCCACCAGCAACATCTGCACGGCTCAG agactcaaatcatatgtgtcctatctgaaacttccaagtcttgtctttagGGACGCTACCGGGAAGGAGGTATATCGCCTTGCTCTCCAAACCAGAGAGCAACACATCCAAAGAGACAAAGCCACTAGCAACATCTGCACAGCCCCAgtgtgagttcttattcctaagatggtctctgtgtctaagccaatgcaggt Alignment from Exonerate_protein2genome GGATGCCACAGGGAAGGAAGTGTATCGCCTCGCTCTCCAGACCAGAGAACAACACATCCGGAGAGACAAAGCCACCAGCAACATCTGCACGGCTCAG agactcaaatcatatgtgtcctatctgaaacttccaagtcttgtctttagGGACGCTACCGGGAAGGAGGTATATCGCCTTGCTCTCCAAACCAGAGAGCAACACATCCAAAGAGACAAAGCCACTAGCAACATCTGCACAGCCCCAgtgtgagttcttattcctaagatggtctctgtgtctaagccaatgcaggt Alignment from Exonerate_coding2genome GGATGCCACAGGGAAGGAAGTGTATCGCCTCGCTCTCCAGACCAGAGAACAACACATCCGGAGAGACAAAGCCACCAGCAACATCTGCACGGCTCAG agactcaaatcatatgtgtcctatctgaaacttccaagtcttgtctttagGGACGCTACCGGGAAGGAGGTATATCGCCTTGCTCTCCAAACCAGAGAGCAACACATCCAAAGAGACAAAGCCACTAGCAACATCTGCACAGCCCCAgtgtgagttcttattcctaagatggtctctgtgtctaagccaatgcaggt Alignment from GeneWise GGATGCCACAGGGAAGGAAGTGTATCGCCTCGCTCTCCAGACCAGAGAACAACACATCCGGAGAGACAAAGCCACCAGCAACATCTGCACGGCTCAG agactcaaatcatatgtgtcctatctgaaacttccaagtcttgtctttagGGACGCTACCGGGAAGGAGGTATATCGCCTTGCTCTCCAAACCAGAGAGCAACACATCCAAAGAGACAAAGCCACTAGCAACATCTGCACAGCCCCAgtgtgagttcttattcctaagatggtctctgtgtctaagccaatgcaggt #### Gldc_ID6408_7 --> 0 - 2 Original Alignment AGCCTGACCTGCTGTGCTACTGACCTTTTAGCTCTGTGTATTTTGAGGCCACCTGGAGAGTTTGGAGTGGACATTGCCCTGGGCAACTCCCAGAGATTTGGAGTGCCACTGGGCTATGGGGGACCGCATGCGGCCTTCTTTGCTGTCAAAGAAAACCTGGTGAGGATGATGCCTGGAAGGATGGTGGGGGTGACAag atatatatttaatctcccctacttaattttcatgtctttctgtatcccagAGCTTGACTTGCTGTGCCACT---------GCTCTGTGCATTTTGAGGCCACCAGGGGAATTTGGTGTGGATATCACCCTTGGTAACTCACAGAGATTTGGA------GTTGGCTATGGTGGACCT---GTGGCCTACTTTGCTATTAAACAAAATGTC---AGGATGATGCCTGGCAGGATGGTTGGAGTGACTaggtctgttatagcgcttgtatagttatcaccccgtatgtgtctgtttcttt Alignment from CESAR AGCCTGACCTGCTGTGCTACTGACCTTTTAGCTCTGTGTATTTTGAGGCCACCTGGAGAGTTTGGAGTGGACATTGCCCTGGGCAACTCCCAGAGATTTGGAGTGCCACTGGGCTATGGGGGACCGCATGCGGCCTTCTTTGCTGTCAAAGAAAACCTGGTGAGGATGATGCCTGGAAGGATGGTGGGGGTGACAag atatatatttaatctcccctacttaattttcatgtctttctgtatcccagAGCTTGACTTGCTGTGCCACT---------GCTCTGTGCATTTTGAGGCCACCAGGGGAATTTGGTGTGGATATCACCCTTGGTAACTCACAGAGATTTGGAGTT------GGCTATGGTGGACCT---GTGGCCTACTTTGCTATTAAACAAAAT---GTCAGGATGATGCCTGGCAGGATGGTTGGAGTGACTaggtctgttatagcgcttgtatagttatcaccccgtatgtgtctgtttcttt Alignment from Spaln_aa2Genome AGCCTGACCTGCTGTGCTACTGACCTTTTAGCTCTGTGTATTTTGAGGCCACCTGGAGAGTTTGGAGTGGACATTGCCCTGGGCAACTCCCAGAGATTTGGAGTGCCACTGGGCTATGGGGGACCGCATGCGGCCTTCTTTGCTGTCAAAGAAAACCTGGTGAGGATGATGCCTGGAAGGATGGTGGGGGTGACAAG atatatatttaatctcccctacttaattttcatgtctttctgtatcccagAGCTTGACTTGCTGTGCCACT---------GCTCTGTGCATTTTGAGGCCACCAGGGGAATTTGGTGTGGATATCACCCTTGGTAACTCACAGAGATTTGGAGTT------GGCTATGGTGGACCT---GTGGCCTACTTTGCTATTAAACAAAAT---GTCAGGATGATGCCTGGCAGGATGGTTGGAGTGACTAGgtctgttatagcgcttgtatagttatcaccccgtatgtgtctgtttcttt Alignment from Spaln_nt2Genome AGCCTGACCTGCTGTGCTACTGACCTTTTAGCTCTGTGTATTTTGAGGCCACCTGGAGAGTTTGGAGTGGACATTGCCCTGGGCAACTCCCAGAGATTTGGAGTGCCACTGGGCTATGGGGGACCGCATGCGGCCTTCTTTGCTGTCAAAGAAAACCTGGTGAGGATGATGCCTGGAAGGATGGTGGGGGTGACAAG atatatatttaatctcccctacttaattttcatgtctttctgtatcccagAGCTTGACTTGCTGTGCCACT---------GCTCTGTGCATTTTGAGGCCACCAGGGGAATTTGGTGTGGATATCACCCTTGGTAACTCACAGAGATTTGGAG------TTGGCTATGGTGGACC---TGTGGCCTACTTTGCTATTAAACAAAA---TGTCAGGATGATGCCTGGCAGGATGGTTGGAGTGACTAGgtctgttatagcgcttgtatagttatcaccccgtatgtgtctgtttcttt Alignment from Pairagon AGCCTGACCTGCTGTGCTACTGACCTTTTAGCTCTGTGTATTTTGAGGCCACCTGGAGAGTTTGGAGTGGACATTGCCCTGGGCAACTCCCAGAGATTTGGAGTGCCACTGGGCTATGGGGGACCGCATGCGGCCTTCTTTGCTGTCAAAGAAAACCTGGTGAGGATGATGCCTGGAAGGATGGTGGGGGTGACAAG atatatatttaatctcccctacttaattttcatgtctttctgtatcccagAGCTTGACTTGCTGTGCCACT---------GCTCTGTGCATTTTGAGGCCACCAGGGGAATTTGGTGTGGATATCACCCTTGGTAACTCACAGAGATTTGGAG------TTGGCTATGGTGGACC---TGTGGCCTACTTTGCTATTAAACAAAAT---GTCAGGATGATGCCTGGCAGGATGGTTGGAGTGACTAGgtctgttatagcgcttgtatagttatcaccccgtatgtgtctgtttcttt Alignment from Exonerate_protein2genome AGCCTGACCTGCTGTGCTACTGACCTTTTAGCTCTGTGTATTTTGAGGCCACCTGGAGAGTTTGGAGTGGACATTGCCCTGGGCAACTCCCAGAGATTTGGAGTGCCACTGGGCTATGGGGGACCGCATGCGGCCTTCTTTGCTGTCAAAGAAAACCTGGTGAGGATGATGCCTGGAAGGATGGTGGGGGTGACAAG atatatatttaatctcccctacttaattttcatgtctttctgtatcccagAGCTTGACTTGCTGTGCCACT---------GCTCTGTGCATTTTGAGGCCACCAGGGGAATTTGGTGTGGATATCACCCTTGGTAACTCACAGAGATTTGGAGTT------GGCTATGGTGGACCT---GTGGCCTACTTTGCTATTAAACAAAAT---GTCAGGATGATGCCTGGCAGGATGGTTGGAGTGACTAGgtctgttatagcgcttgtatagttatcaccccgtatgtgtctgtttcttt Alignment from Exonerate_coding2genome AGCCTGACCTGCTGTGCTACTGACCTTTTAGCTCTGTGTATTTTGAGGCCACCTGGAGAGTTTGGAGTGGACATTGCCCTGGGCAACTCCCAGAGATTTGGAGTGCCACTGGGCTATGGGGGACCGCATGCGGCCTTCTTTGCTGTCAAAGAAAACCTGGTGAGGATGATGCCTGGAAGGATGGTGGGGGTGACAAG atatatatttaatctcccctacttaattttcatgtctttctgtatcccagAGCTTGACTTGCTGTGCCACT---------GCTCTGTGCATTTTGAGGCCACCAGGGGAATTTGGTGTGGATATCACCCTTGGTAACTCACAGAGATTTGGAGTT------GGCTATGGTGGACCT---GTGGCCTACTTTGCTATTAAACAAAAT---GTCAGGATGATGCCTGGCAGGATGGTTGGAGTGACTAGgtctgttatagcgcttgtatagttatcaccccgtatgtgtctgtttcttt Alignment from GeneWise AGCCTGACCTGCTGTGCTACTGACCTTTTAGCTCTGTGTATTTTGAGGCCACCTGGAGAGTTTGGAGTGGACATTGCCCTGGGCAACTCCCAGAGATTTGGAGTGCCACTGGGCTATGGGGGACCGCATGCGGCCTTCTTTGCTGTCAAAGAAAACCTGGTGAGGATGATGCCTGGAAGGATGGTGGGGGTGACAAG atatatatttaatctcccctacttaattttcatgtctttctgtatcccagAGCTTGACTTGCTGTGCCACT---------GCTCTGTGCATTTTGAGGCCACCAGGGGAATTTGGTGTGGATATCACCCTTGGTAACTCACAGAGATTTGGAGTT------GGCTATGGTGGACCT---GTGGCCTACTTTGCTATTAAACAAAAT---GTCAGGATGATGCCTGGCAGGATGGTTGGAGTGACTAGgtctgttatagcgcttgtatagttatcaccccgtatgtgtctgtttcttt #### Gldc_ID6410_5 --> 1 - 2 Original Alignment aCACAACAAGAGGAAGAAATTTTTCGTTGATCCTCGTTGTCACCCACAGACGATAGCTGTTGTCCAGACTCGAGCCaa ttggattgagataatagatgcctagtttttggtgttcttgtttgattcagaCACAACAAGAGAAGGAAATTCTTGGCTGATCCGTGTTGTCACCCA---ATCATTGCAGTTGTCCGGACTCGTGCCaagtaaaagattttgttgcaggtcataagttaaattttctaattcatcttgt Alignment from CESAR aCACAACAAGAGGAAGAAATTTTTCGTTGATCCTCGTTGTCACCCACAGACGATAGCTGTTGTCCAGACTCGAGCCaa ttggattgagataatagatgcctagtttttggtgttcttgtttgattcagaCACAACAAGAGAAGGAAATTCTTGGCTGATCCGTGTTGTCACCCA---ATCATTGCAGTTGTCCGGACTCGTGCCaagtaaaagattttgttgcaggtcataagttaaattttctaattcatcttgt Alignment from Spaln_aa2Genome ACACAACAAGAGGAAGAAATTTTTCGTTGATCCTCGTTGTCACCCACAGACGATAGCTGTTGTCCAGACTCGAGCCAA ttggattgagataatagatgcctagtttttggtgttcttgtttgattcagACACAACAAGAGAAGGAAATTCTTGGCTGATCCGTGTTGTCACCCA---ATCATTGCAGTTGTCCGGACTCGTGCCAAgtaaaagattttgttgcaggtcataagttaaattttctaattcatcttgt Alignment from Spaln_nt2Genome ACACAACAAGAGGAAGAAATTTTTCGTTGATCCTCGTTGTCACCCACAGACGATAGCTGTTGTCCAGACTCGAGCCAA ttggattgagataatagatgcctagtttttggtgttcttgtttgattcagACACAACAAGAGAAGGAAATTCTTGGCTGATCCGTGTTGTCACCCA---ATCATTGCAGTTGTCCGGACTCGTGCCAAgtaaaagattttgttgcaggtcataagttaaattttctaattcatcttgt Alignment from Pairagon ACACAACAAGAGGAAGAAATTTTTCGTTGATCCTCGTTGTCACCCACAGACGATAGCTGTTGTCCAGACTCGAGCCAA ttggattgagataatagatgcctagtttttggtgttcttgtttgattcagACACAACAAGAGAAGGAAATTCTTGGCTGATCCGTGTTGTCACCCA---ATCATTGCAGTTGTCCGGACTCGTGCCAAgtaaaagattttgttgcaggtcataagttaaattttctaattcatcttgt Alignment from Exonerate_protein2genome ACACAACAAGAGGAAGAAATTTTTCGTTGATCCTCGTTGTCACCCACAGACGATAGCTGTTGTCCAGACTCGAGCCAA ttggattgagataatagatgcctagtttttggtgttcttgtttgattcagACACAACAAGAGAAGGAAATTCTTGGCTGATCCGTGTTGTCACCCA---ATCATTGCAGTTGTCCGGACTCGTGCCAAgtaaaagattttgttgcaggtcataagttaaattttctaattcatcttgt Alignment from Exonerate_coding2genome ACACAACAAGAGGAAGAAATTTTTCGTTGATCCTCGTTGTCACCCACAGACGATAGCTGTTGTCCAGACTCGAGCCAA ttggattgagataatagatgcctagtttttggtgttcttgtttgattcagACACAACAAGAGAAGGAAATTCTTGGCTGATCCGTGTTGTCACCCA---ATCATTGCAGTTGTCCGGACTCGTGCCAAgtaaaagattttgttgcaggtcataagttaaattttctaattcatcttgt Alignment from GeneWise ACACAACAAGAGGAAGAAATTTTTCGTTGATCCTCGTTGTCACCCACAGACGATAGCTGTTGTCCAGACTCGAGCCAA ttggattgagataatagatgcctagtttttggtgttcttgtttgattcagACACAACAAGAGAAGGAAATTCTTGGCTGATCCGTGTTGTCACCCA---ATCATTGCAGTTGTCCGGACTCGTGCCAAgtaaaagattttgttgcaggtcataagttaaattttctaattcatcttgt #### Gldc_ID6411_4 --> 1 - 2 Original Alignment gGTCACCCAGTACACTCCGTATCAGCCAGAGGTGTCCCAGGGGAGGCTGGAGAGTTTACTCAACTACCAGACCATGGTGTCTGACATCACAGGCTTGGACATGGCCAACGCTTCCCTGCTGGATGAGGCAACCGCGGCTGCAGAGGCGATGCAACTGTGCCACag caaaactgattttagagtaattcatcatttttttctgtcaattaccacaggGTTGCCCAGTATACCCCTTACAAGCCAGAGGTGTCCGAGGGTAGGCTTGAGAGTCTACTCAACCACCAGACCATGGTGTCTGATATCACTGGCCTTGACATGGCAAATGCTTCCTTGCTTGATGAATCAACAGCAGCTCCTGAGGCAATCCAACTGTGTCACaggtgaggcgtggtgtaggagagtctgccaagcaccagggcactctgtcaga Alignment from CESAR gGTCACCCAGTACACTCCGTATCAGCCAGAGGTGTCCCAGGGGAGGCTGGAGAGTTTACTCAACTACCAGACCATGGTGTCTGACATCACAGGCTTGGACATGGCCAACGCTTCCCTGCTGGATGAGGCAACCGCGGCTGCAGAGGCGATGCAACTGTGCCACag caaaactgattttagagtaattcatcatttttttctgtcaattaccacaggGTTGCCCAGTATACCCCTTACAAGCCAGAGGTGTCCGAGGGTAGGCTTGAGAGTCTACTCAACCACCAGACCATGGTGTCTGATATCACTGGCCTTGACATGGCAAATGCTTCCTTGCTTGATGAATCAACAGCAGCTCCTGAGGCAATCCAACTGTGTCACaggtgaggcgtggtgtaggagagtctgccaagcaccagggcactctgtcaga Alignment from Spaln_aa2Genome GGTCACCCAGTACACTCCGTATCAGCCAGAGGTGTCCCAGGGGAGGCTGGAGAGTTTACTCAACTACCAGACCATGGTGTCTGACATCACAGGCTTGGACATGGCCAACGCTTCCCTGCTGGATGAGGCAACCGCGGCTGCAGAGGCGATGCAACTGTGCCACAG caaaactgattttagagtaattcatcatttttttctgtcaattaccacagGGTTGCCCAGTATACCCCTTACAAGCCAGAGGTGTCCGAGGGTAGGCTTGAGAGTCTACTCAACCACCAGACCATGGTGTCTGATATCACTGGCCTTGACATGGCAAATGCTTCCTTGCTTGATGAATCAACAGCAGCTCCTGAGGCAATCCAACTGTGTCACAGgtgaggcgtggtgtaggagagtctgccaagcaccagggcactctgtcaga Alignment from Spaln_nt2Genome GGTCACCCAGTACACTCCGTATCAGCCAGAGGTGTCCCAGGGGAGGCTGGAGAGTTTACTCAACTACCAGACCATGGTGTCTGACATCACAGGCTTGGACATGGCCAACGCTTCCCTGCTGGATGAGGCAACCGCGGCTGCAGAGGCGATGCAACTGTGCCACAG caaaactgattttagagtaattcatcatttttttctgtcaattaccacagGGTTGCCCAGTATACCCCTTACAAGCCAGAGGTGTCCGAGGGTAGGCTTGAGAGTCTACTCAACCACCAGACCATGGTGTCTGATATCACTGGCCTTGACATGGCAAATGCTTCCTTGCTTGATGAATCAACAGCAGCTCCTGAGGCAATCCAACTGTGTCACAGgtgaggcgtggtgtaggagagtctgccaagcaccagggcactctgtcaga Alignment from Pairagon GGTCACCCAGTACACTCCGTATCAGCCAGAGGTGTCCCAGGGGAGGCTGGAGAGTTTACTCAACTACCAGACCATGGTGTCTGACATCACAGGCTTGGACATGGCCAACGCTTCCCTGCTGGATGAGGCAACCGCGGCTGCAGAGGCGATGCAACTGTGCCACAG caaaactgattttagagtaattcatcatttttttctgtcaattaccacagGGTTGCCCAGTATACCCCTTACAAGCCAGAGGTGTCCGAGGGTAGGCTTGAGAGTCTACTCAACCACCAGACCATGGTGTCTGATATCACTGGCCTTGACATGGCAAATGCTTCCTTGCTTGATGAATCAACAGCAGCTCCTGAGGCAATCCAACTGTGTCACAGgtgaggcgtggtgtaggagagtctgccaagcaccagggcactctgtcaga Alignment from Exonerate_protein2genome GGTCACCCAGTACACTCCGTATCAGCCAGAGGTGTCCCAGGGGAGGCTGGAGAGTTTACTCAACTACCAGACCATGGTGTCTGACATCACAGGCTTGGACATGGCCAACGCTTCCCTGCTGGATGAGGCAACCGCGGCTGCAGAGGCGATGCAACTGTGCCACAG caaaactgattttagagtaattcatcatttttttctgtcaattaccacagGGTTGCCCAGTATACCCCTTACAAGCCAGAGGTGTCCGAGGGTAGGCTTGAGAGTCTACTCAACCACCAGACCATGGTGTCTGATATCACTGGCCTTGACATGGCAAATGCTTCCTTGCTTGATGAATCAACAGCAGCTCCTGAGGCAATCCAACTGTGTCACAGgtgaggcgtggtgtaggagagtctgccaagcaccagggcactctgtcaga Alignment from Exonerate_coding2genome GGTCACCCAGTACACTCCGTATCAGCCAGAGGTGTCCCAGGGGAGGCTGGAGAGTTTACTCAACTACCAGACCATGGTGTCTGACATCACAGGCTTGGACATGGCCAACGCTTCCCTGCTGGATGAGGCAACCGCGGCTGCAGAGGCGATGCAACTGTGCCACAG caaaactgattttagagtaattcatcatttttttctgtcaattaccacagGGTTGCCCAGTATACCCCTTACAAGCCAGAGGTGTCCGAGGGTAGGCTTGAGAGTCTACTCAACCACCAGACCATGGTGTCTGATATCACTGGCCTTGACATGGCAAATGCTTCCTTGCTTGATGAATCAACAGCAGCTCCTGAGGCAATCCAACTGTGTCACAGgtgaggcgtggtgtaggagagtctgccaagcaccagggcactctgtcaga Alignment from GeneWise GGTCACCCAGTACACTCCGTATCAGCCAGAGGTGTCCCAGGGGAGGCTGGAGAGTTTACTCAACTACCAGACCATGGTGTCTGACATCACAGGCTTGGACATGGCCAACGCTTCCCTGCTGGATGAGGCAACCGCGGCTGCAGAGGCGATGCAACTGTGCCACAG caaaactgattttagagtaattcatcatttttttctgtcaattaccacagGGTTGCCCAGTATACCCCTTACAAGCCAGAGGTGTCCGAGGGTAGGCTTGAGAGTCTACTCAACCACCAGACCATGGTGTCTGATATCACTGGCCTTGACATGGCAAATGCTTCCTTGCTTGATGAATCAACAGCAGCTCCTGAGGCAATCCAACTGTGTCACAGgtgaggcgtggtgtaggagagtctgccaagcaccagggcactctgtcaga #### Glyat_ID3430_3 --> 0 - 1 Original Alignment GAGATGACAGATGACCTTGATTTCTACATCAATACTTACCAGGTCTACTCCAAAGACCCCCAGAACTGTCAGGAATTCCTGGAGTCCTCAGAAGTCATTAACTGGAAACAACATTTGCAGATTCAAa aagtggtcacttttacggtgttatacatactctccctccctcctgtccagGAGATGACAGACGACCTTGAGTTCTACATCATTACTTACCAGGCCTACTCAAAAGACACCCAAAATTGGCAGGGATTTCTAGAGTCCTCAAAGGTTACTAACTGGAAACAACACTTGCAAATTCAAagtaagtacatgtgtaacaaggaaatgtcaaatttgtaacttgactttata Alignment from CESAR GAGATGACAGATGACCTTGATTTCTACATCAATACTTACCAGGTCTACTCCAAAGACCCCCAGAACTGTCAGGAATTCCTGGAGTCCTCAGAAGTCATTAACTGGAAACAACATTTGCAGATTCAAa aagtggtcacttttacggtgttatacatactctccctccctcctgtccagGAGATGACAGACGACCTTGAGTTCTACATCATTACTTACCAGGCCTACTCAAAAGACACCCAAAATTGGCAGGGATTTCTAGAGTCCTCAAAGGTTACTAACTGGAAACAACACTTGCAAATTCAAagtaagtacatgtgtaacaaggaaatgtcaaatttgtaacttgactttata Alignment from Spaln_aa2Genome GAGATGACAGATGACCTTGATTTCTACATCAATACTTACCAGGTCTACTCCAAAGACCCCCAGAACTGTCAGGAATTCCTGGAGTCCTCAGAAGTCATTAACTGGAAACAACATTTGCAGATTCAAA aagtggtcacttttacggtgttatacatactctccctccctcctgtccagGAGATGACAGACGACCTTGAGTTCTACATCATTACTTACCAGGCCTACTCAAAAGACACCCAAAATTGGCAGGGATTTCTAGAGTCCTCAAAGGTTACTAACTGGAAACAACACTTGCAAATTCAAAgtaagtacatgtgtaacaaggaaatgtcaaatttgtaacttgactttata Alignment from Spaln_nt2Genome GAGATGACAGATGACCTTGATTTCTACATCAATACTTACCAGGTCTACTCCAAAGACCCCCAGAACTGTCAGGAATTCCTGGAGTCCTCAGAAGTCATTAACTGGAAACAACATTTGCAGATTCAAA aagtggtcacttttacggtgttatacatactctccctccctcctgtccagGAGATGACAGACGACCTTGAGTTCTACATCATTACTTACCAGGCCTACTCAAAAGACACCCAAAATTGGCAGGGATTTCTAGAGTCCTCAAAGGTTACTAACTGGAAACAACACTTGCAAATTCAAAgtaagtacatgtgtaacaaggaaatgtcaaatttgtaacttgactttata Alignment from Pairagon GAGATGACAGATGACCTTGATTTCTACATCAATACTTACCAGGTCTACTCCAAAGACCCCCAGAACTGTCAGGAATTCCTGGAGTCCTCAGAAGTCATTAACTGGAAACAACATTTGCAGATTCAAA aagtggtcacttttacggtgttatacatactctccctccctcctgtccagGAGATGACAGACGACCTTGAGTTCTACATCATTACTTACCAGGCCTACTCAAAAGACACCCAAAATTGGCAGGGATTTCTAGAGTCCTCAAAGGTTACTAACTGGAAACAACACTTGCAAATTCAAAgtaagtacatgtgtaacaaggaaatgtcaaatttgtaacttgactttata Alignment from Exonerate_protein2genome GAGATGACAGATGACCTTGATTTCTACATCAATACTTACCAGGTCTACTCCAAAGACCCCCAGAACTGTCAGGAATTCCTGGAGTCCTCAGAAGTCATTAACTGGAAACAACATTTGCAGATTCAAA aagtggtcacttttacggtgttatacatactctccctccctcctgtccagGAGATGACAGACGACCTTGAGTTCTACATCATTACTTACCAGGCCTACTCAAAAGACACCCAAAATTGGCAGGGATTTCTAGAGTCCTCAAAGGTTACTAACTGGAAACAACACTTGCAAATTCAAAgtaagtacatgtgtaacaaggaaatgtcaaatttgtaacttgactttata Alignment from Exonerate_coding2genome GAGATGACAGATGACCTTGATTTCTACATCAATACTTACCAGGTCTACTCCAAAGACCCCCAGAACTGTCAGGAATTCCTGGAGTCCTCAGAAGTCATTAACTGGAAACAACATTTGCAGATTCAAA aagtggtcacttttacggtgttatacatactctccctccctcctgtccagGAGATGACAGACGACCTTGAGTTCTACATCATTACTTACCAGGCCTACTCAAAAGACACCCAAAATTGGCAGGGATTTCTAGAGTCCTCAAAGGTTACTAACTGGAAACAACACTTGCAAATTCAAAgtaagtacatgtgtaacaaggaaatgtcaaatttgtaacttgactttata Alignment from GeneWise GAGATGACAGATGACCTTGATTTCTACATCAATACTTACCAGGTCTACTCCAAAGACCCCCAGAACTGTCAGGAATTCCTGGAGTCCTCAGAAGTCATTAACTGGAAACAACATTTGCAGATTCAAA aagtggtcacttttacggtgttatacatactctccctccctcctgtccagGAGATGACAGACGACCTTGAGTTCTACATCATTACTTACCAGGCCTACTCAAAAGACACCCAAAATTGGCAGGGATTTCTAGAGTCCTCAAAGGTTACTAACTGGAAACAACACTTGCAAATTCAAAgtaagtacatgtgtaacaaggaaatgtcaaatttgtaacttgactttata #### Gm815_ID5779_3 --> 2 - 0 Original Alignment gtGCCTCAAGAGAGGAAGGACAAAGTGATACCCACTGGGGTCCAGCCAGCCCATCATTCCTGCATATTGACCCCGGAGGCCGGTGCCAGTGGAATAGCAGT catcatgatattctacttctcctacattagctcggttgtcctttccgcaggtGCCTCAAGAGAGGAAGGGCAAAGTGACACCCACTGGGGTCCAGCCTGCCCATCATTCCTACATATTGACCCTGGAGGCCGGTGCCAGTGGAATAGCAGTgttagtgttgtgtgtctgcttaggtgctcatgctcccaaatagtgggaac Alignment from CESAR gtGCCTCAAGAGAGGAAGGACAAAGTGATACCCACTGGGGTCCAGCCAGCCCATCATTCCTGCATATTGACCCCGGAGGCCGGTGCCAGTGGAATAGCAGT catcatgatattctacttctcctacattagctcggttgtcctttccgcaggtGCCTCAAGAGAGGAAGGGCAAAGTGACACCCACTGGGGTCCAGCCTGCCCATCATTCCTACATATTGACCCTGGAGGCCGGTGCCAGTGGAATAGCAGTgttagtgttgtgtgtctgcttaggtgctcatgctcccaaatagtgggaac Alignment from Spaln_aa2Genome CACTTCCTTCTCTACGTTTAGAACTGCTTCCCATACTTTTTTCCCCCACTGTGCCTCAAGAGAGGAAGGACAAAGTGATACCCACTGGGGTCCAGCCAGCCCATCATTCCTGCATATTGACCCCGGAGGCCGGTGCCAGTGGAATAGCAGT CATCATGATATTCTACTTCTCCTACATTAGCTCGGTTGTCCTTTCCGCAGGTGCCTCAAGAGAGGAAGGGCAAAGTGACACCCACTGGGGTCCAGCCTGCCCATCATTCCTACATATTGACCCTGGAGGCCGGTGCCAGTGGAATAGCAGTgttagtgttgtgtgtctgcttaggtgctcatgctcccaaatagtgggaac Alignment from Spaln_nt2Genome GTGCCTCAAGAGAGGAAGGACAAAGTGATACCCACTGGGGTCCAGCCAGCCCATCATTCCTGCATATTGACCCCGGAGGCCGGTGCCAGTGGAATAGCAGT catcatgatattctacttctcctacattagctcggttgtcctttccgcagGTGCCTCAAGAGAGGAAGGGCAAAGTGACACCCACTGGGGTCCAGCCTGCCCATCATTCCTACATATTGACCCTGGAGGCCGGTGCCAGTGGAATAGCAGTgttagtgttgtgtgtctgcttaggtgctcatgctcccaaatagtgggaac Alignment from Pairagon GTGCCTCAAGAGAGGAAGGACAAAGTGATACCCACTGGGGTCCAGCCAGCCCATCATTCCTGCATATTGACCCCGGAGGCCGGTGCCAGTGGAATAGCAGT catcatgatattctacttctcctacattagctcggttgtcctttccgcagGTGCCTCAAGAGAGGAAGGGCAAAGTGACACCCACTGGGGTCCAGCCTGCCCATCATTCCTACATATTGACCCTGGAGGCCGGTGCCAGTGGAATAGCAGTgttagtgttgtgtgtctgcttaggtgctcatgctcccaaatagtgggaac Alignment from Exonerate_protein2genome CACTTCCTTCTCTACGTTTAGAACTGCTTCCCATACTTTTTTCCCCCACTGTGCCTCAAGAGAGGAAGGACAAAGTGATACCCACTGGGGTCCAGCCAGCCCATCATTCCTGCATATTGACCCCGGAGGCCGGTGCCAGTGGAATAGCAGT CATCATGATATTCTACTTCTCCTACATTAGCTCGGTTGTCCTTTCCGCAGGTGCCTCAAGAGAGGAAGGGCAAAGTGACACCCACTGGGGTCCAGCCTGCCCATCATTCCTACATATTGACCCTGGAGGCCGGTGCCAGTGGAATAGCAGTgttagtgttgtgtgtctgcttaggtgctcatgctcccaaatagtgggaac Alignment from Exonerate_coding2genome GCCTCAAGAGAGGAAGGACAAAGTGATACCCACTGGGGTCCAGCCAGCCCATCATTCCTGCATATTGACCCCGGAGGCCGGTGCCAGTGGAATAGCAGT catcatgatattctacttctcctacattagctcggttgtcctttccgcaggtGCCTCAAGAGAGGAAGGGCAAAGTGACACCCACTGGGGTCCAGCCTGCCCATCATTCCTACATATTGACCCTGGAGGCCGGTGCCAGTGGAATAGCAGTgttagtgttgtgtgtctgcttaggtgctcatgctcccaaatagtgggaac Alignment from GeneWise GCCTCAAGAGAGGAAGGACAAAGTGATACCCACTGGGGTCCAGCCAGCCCATCATTCCTGCATATTGACCCCGGAGGCCGGTGCCAGTGGAATAGCAGT catcatgatattctacttctcctacattagctcggttgtcctttccgcaggtGCCTCAAGAGAGGAAGGGCAAAGTGACACCCACTGGGGTCCAGCCTGCCCATCATTCCTACATATTGACCCTGGAGGCCGGTGCCAGTGGAATAGCAGTgttagtgttgtgtgtctgcttaggtgctcatgctcccaaatagtgggaac #### Gm8369_ID3207_3 --> 0 - 0 Original Alignment GGTTTGGATGCTTTGAAGTTAGTTTTAAATATGCTAGAATTCTGCCTTGCTGTGTCCATCTCTGCATTTGGATGTAAAGCTTCCTGCTGTAACTCCAGAGAG ttggttgtgtaaatgacttttcattgctccttgcttcttgcgtcttacagGGTTCTGATGCACTAAAGTTAGTTTTAAACATACTAGAATTCTGCTTAGCTGTACCCATCTCTGCATTTGGATGCAAAGCTTCCTGCTGTAACTCTAGAGAGgtgagtagcttttacttgttctagcaaaggtgacaatagaagggactatc Alignment from CESAR GGTTTGGATGCTTTGAAGTTAGTTTTAAATATGCTAGAATTCTGCCTTGCTGTGTCCATCTCTGCATTTGGATGTAAAGCTTCCTGCTGTAACTCCAGAGAG ttggttgtgtaaatgacttttcattgctccttgcttcttgcgtcttacagGGTTCTGATGCACTAAAGTTAGTTTTAAACATACTAGAATTCTGCTTAGCTGTACCCATCTCTGCATTTGGATGCAAAGCTTCCTGCTGTAACTCTAGAGAGgtgagtagcttttacttgttctagcaaaggtgacaatagaagggactatc Alignment from Spaln_aa2Genome GGTTTGGATGCTTTGAAGTTAGTTTTAAATATGCTAGAATTCTGCCTTGCTGTGTCCATCTCTGCATTTGGATGTAAAGCTTCCTGCTGTAACTCCAGAGAG ttggttgtgtaaatgacttttcattgctccttgcttcttgcgtcttacagGGTTCTGATGCACTAAAGTTAGTTTTAAACATACTAGAATTCTGCTTAGCTGTACCCATCTCTGCATTTGGATGCAAAGCTTCCTGCTGTAACTCTAGAGAGgtgagtagcttttacttgttctagcaaaggtgacaatagaagggactatc Alignment from Spaln_nt2Genome GGTTTGGATGCTTTGAAGTTAGTTTTAAATATGCTAGAATTCTGCCTTGCTGTGTCCATCTCTGCATTTGGATGTAAAGCTTCCTGCTGTAACTCCAGAGAG ttggttgtgtaaatgacttttcattgctccttgcttcttgcgtcttacagGGTTCTGATGCACTAAAGTTAGTTTTAAACATACTAGAATTCTGCTTAGCTGTACCCATCTCTGCATTTGGATGCAAAGCTTCCTGCTGTAACTCTAGAGAGgtgagtagcttttacttgttctagcaaaggtgacaatagaagggactatc Alignment from Pairagon GGTTTGGATGCTTTGAAGTTAGTTTTAAATATGCTAGAATTCTGCCTTGCTGTGTCCATCTCTGCATTTGGATGTAAAGCTTCCTGCTGTAACTCCAGAGAG ttggttgtgtaaatgacttttcattgctccttgcttcttgcgtcttacagGGTTCTGATGCACTAAAGTTAGTTTTAAACATACTAGAATTCTGCTTAGCTGTACCCATCTCTGCATTTGGATGCAAAGCTTCCTGCTGTAACTCTAGAGAGgtgagtagcttttacttgttctagcaaaggtgacaatagaagggactatc Alignment from Exonerate_protein2genome GGTTTGGATGCTTTGAAGTTAGTTTTAAATATGCTAGAATTCTGCCTTGCTGTGTCCATCTCTGCATTTGGATGTAAAGCTTCCTGCTGTAACTCCAGAGAG ttggttgtgtaaatgacttttcattgctccttgcttcttgcgtcttacagGGTTCTGATGCACTAAAGTTAGTTTTAAACATACTAGAATTCTGCTTAGCTGTACCCATCTCTGCATTTGGATGCAAAGCTTCCTGCTGTAACTCTAGAGAGgtgagtagcttttacttgttctagcaaaggtgacaatagaagggactatc Alignment from Exonerate_coding2genome GGTTTGGATGCTTTGAAGTTAGTTTTAAATATGCTAGAATTCTGCCTTGCTGTGTCCATCTCTGCATTTGGATGTAAAGCTTCCTGCTGTAACTCCAGAGAG ttggttgtgtaaatgacttttcattgctccttgcttcttgcgtcttacagGGTTCTGATGCACTAAAGTTAGTTTTAAACATACTAGAATTCTGCTTAGCTGTACCCATCTCTGCATTTGGATGCAAAGCTTCCTGCTGTAACTCTAGAGAGgtgagtagcttttacttgttctagcaaaggtgacaatagaagggactatc Alignment from GeneWise GGTTTGGATGCTTTGAAGTTAGTTTTAAATATGCTAGAATTCTGCCTTGCTGTGTCCATCTCTGCATTTGGATGTAAAGCTTCCTGCTGTAACTCCAGAGAG ttggttgtgtaaatgacttttcattgctccttgcttcttgcgtcttacagGGTTCTGATGCACTAAAGTTAGTTTTAAACATACTAGAATTCTGCTTAGCTGTACCCATCTCTGCATTTGGATGCAAAGCTTCCTGCTGTAACTCTAGAGAGgtgagtagcttttacttgttctagcaaaggtgacaatagaagggactatc #### Gnaq_ID4029_4 --> 1 - 2 Original Alignment cTATCTGAATGACTTGGACCGTGTAGCCGACCCTTCCTATCTGCCTACACAACAAGACGTGCTTAGAGTTCGAGTCCCCACTACAGGGATCATCGAATACCCCTTTGACTTACAAAGTGTCATTTTCag taatttctcatcattagacaacggtatcggcctatcctcaccacctgcagcTATCTGAATGAGTTAGACCGTTTAGCTGACCCTTCTTATCTCCCAACACAACAAGATGTGCTTAGAGTCTGTGTCCCCACCACAGGGATCATTGAGTATCCCTTTGACCTACAAAGTGTTATAATTaggtaatactagtctttagcacaaaatcagcacagttctaattaaggttggg Alignment from CESAR cTATCTGAATGACTTGGACCGTGTAGCCGACCCTTCCTATCTGCCTACACAACAAGACGTGCTTAGAGTTCGAGTCCCCACTACAGGGATCATCGAATACCCCTTTGACTTACAAAGTGTCATTTTCag taatttctcatcattagacaacggtatcggcctatcctcaccacctgcagcTATCTGAATGAGTTAGACCGTTTAGCTGACCCTTCTTATCTCCCAACACAACAAGATGTGCTTAGAGTCTGTGTCCCCACCACAGGGATCATTGAGTATCCCTTTGACCTACAAAGTGTTATAATTaggtaatactagtctttagcacaaaatcagcacagttctaattaaggttggg Alignment from Spaln_aa2Genome CTATCTGAATGACTTGGACCGTGTAGCCGACCCTTCCTATCTGCCTACACAACAAGACGTGCTTAGAGTTCGAGTCCCCACTACAGGGATCATCGAATACCCCTTTGACTTACAAAGTGTCATTTTCAG taatttctcatcattagacaacggtatcggcctatcctcaccacctgcagCTATCTGAATGAGTTAGACCGTTTAGCTGACCCTTCTTATCTCCCAACACAACAAGATGTGCTTAGAGTCTGTGTCCCCACCACAGGGATCATTGAGTATCCCTTTGACCTACAAAGTGTTATAATTAGgtaatactagtctttagcacaaaatcagcacagttctaattaaggttggg Alignment from Spaln_nt2Genome CTATCTGAATGACTTGGACCGTGTAGCCGACCCTTCCTATCTGCCTACACAACAAGACGTGCTTAGAGTTCGAGTCCCCACTACAGGGATCATCGAATACCCCTTTGACTTACAAAGTGTCATTTTCAG taatttctcatcattagacaacggtatcggcctatcctcaccacctgcagCTATCTGAATGAGTTAGACCGTTTAGCTGACCCTTCTTATCTCCCAACACAACAAGATGTGCTTAGAGTCTGTGTCCCCACCACAGGGATCATTGAGTATCCCTTTGACCTACAAAGTGTTATAATTAGgtaatactagtctttagcacaaaatcagcacagttctaattaaggttggg Alignment from Pairagon CTATCTGAATGACTTGGACCGTGTAGCCGACCCTTCCTATCTGCCTACACAACAAGACGTGCTTAGAGTTCGAGTCCCCACTACAGGGATCATCGAATACCCCTTTGACTTACAAAGTGTCATTTTCAG taatttctcatcattagacaacggtatcggcctatcctcaccacctgcagCTATCTGAATGAGTTAGACCGTTTAGCTGACCCTTCTTATCTCCCAACACAACAAGATGTGCTTAGAGTCTGTGTCCCCACCACAGGGATCATTGAGTATCCCTTTGACCTACAAAGTGTTATAATTAGgtaatactagtctttagcacaaaatcagcacagttctaattaaggttggg Alignment from Exonerate_protein2genome CTATCTGAATGACTTGGACCGTGTAGCCGACCCTTCCTATCTGCCTACACAACAAGACGTGCTTAGAGTTCGAGTCCCCACTACAGGGATCATCGAATACCCCTTTGACTTACAAAGTGTCATTTTCAG taatttctcatcattagacaacggtatcggcctatcctcaccacctgcagCTATCTGAATGAGTTAGACCGTTTAGCTGACCCTTCTTATCTCCCAACACAACAAGATGTGCTTAGAGTCTGTGTCCCCACCACAGGGATCATTGAGTATCCCTTTGACCTACAAAGTGTTATAATTAGgtaatactagtctttagcacaaaatcagcacagttctaattaaggttggg Alignment from Exonerate_coding2genome CTATCTGAATGACTTGGACCGTGTAGCCGACCCTTCCTATCTGCCTACACAACAAGACGTGCTTAGAGTTCGAGTCCCCACTACAGGGATCATCGAATACCCCTTTGACTTACAAAGTGTCATTTTCAG taatttctcatcattagacaacggtatcggcctatcctcaccacctgcagCTATCTGAATGAGTTAGACCGTTTAGCTGACCCTTCTTATCTCCCAACACAACAAGATGTGCTTAGAGTCTGTGTCCCCACCACAGGGATCATTGAGTATCCCTTTGACCTACAAAGTGTTATAATTAGgtaatactagtctttagcacaaaatcagcacagttctaattaaggttggg Alignment from GeneWise CTATCTGAATGACTTGGACCGTGTAGCCGACCCTTCCTATCTGCCTACACAACAAGACGTGCTTAGAGTTCGAGTCCCCACTACAGGGATCATCGAATACCCCTTTGACTTACAAAGTGTCATTTTCAG taatttctcatcattagacaacggtatcggcctatcctcaccacctgcagCTATCTGAATGAGTTAGACCGTTTAGCTGACCCTTCTTATCTCCCAACACAACAAGATGTGCTTAGAGTCTGTGTCCCCACCACAGGGATCATTGAGTATCCCTTTGACCTACAAAGTGTTATAATTAGgtaatactagtctttagcacaaaatcagcacagttctaattaaggttggg #### Golga7b_ID8449_2 --> 0 - 0 Original Alignment GTCCACAATCTTCAGGAGCTCAGGCGAAGCGCTTCGCTGGCCACCAAGGTCTTTATCCAGAGAGACTACAGTGACGGCACCATCTGTCAGTTCCAGACCAAATTCCCGCCAGAGCTGGATAGCCGG aaaacaggcaatcataaaggtgttttaacttgtttatttacttattgtagGTCCACAATCTTCAGGAGCTCAGGCGAAGTGCTTCACTAGCCACCAAGGTCTTTATTCAGAGAGACTACAGTGACAGCACCATCTGTCAGTTCCAGACAAAATTCCCA---CAACTGGATAGCCAGgtaaaatcagctctaagggattagcgccattaacttcactgctggaactt Alignment from CESAR GTCCACAATCTTCAGGAGCTCAGGCGAAGCGCTTCGCTGGCCACCAAGGTCTTTATCCAGAGAGACTACAGTGACGGCACCATCTGTCAGTTCCAGACCAAATTCCCGCCAGAGCTGGATAGCCGG aaaacaggcaatcataaaggtgttttaacttgtttatttacttattgtagGTCCACAATCTTCAGGAGCTCAGGCGAAGTGCTTCACTAGCCACCAAGGTCTTTATTCAGAGAGACTACAGTGACAGCACCATCTGTCAGTTCCAGACAAAATTCCCACAA---CTGGATAGCCAGgtaaaatcagctctaagggattagcgccattaacttcactgctggaactt Alignment from Spaln_aa2Genome GTCCACAATCTTCAGGAGCTCAGGCGAAGCGCTTCGCTGGCCACCAAGGTCTTTATCCAGAGAGACTACAGTGACGGCACCATCTGTCAGTTCCAGACCAAATTCCCGCCAGAGCTGGATAGCCGG aaaacaggcaatcataaaggtgttttaacttgtttatttacttattgtagGTCCACAATCTTCAGGAGCTCAGGCGAAGTGCTTCACTAGCCACCAAGGTCTTTATTCAGAGAGACTACAGTGACAGCACCATCTGTCAGTTCCAGACAAAATTC---CCACAACTGGATAGCCAGgtaaaatcagctctaagggattagcgccattaacttcactgctggaactt Alignment from Spaln_nt2Genome GTCCACAATCTTCAGGAGCTCAGGCGAAGCGCTTCGCTGGCCACCAAGGTCTTTATCCAGAGAGACTACAGTGACGGCACCATCTGTCAGTTCCAGACCAAATTCCCGCCAGAGCTGGATAGCCGG aaaacaggcaatcataaaggtgttttaacttgtttatttacttattgtagGTCCACAATCTTCAGGAGCTCAGGCGAAGTGCTTCACTAGCCACCAAGGTCTTTATTCAGAGAGACTACAGTGACAGCACCATCTGTCAGTTCCAGACAAAATTC---CCACAACTGGATAGCCAGgtaaaatcagctctaagggattagcgccattaacttcactgctggaactt Alignment from Pairagon GTCCACAATCTTCAGGAGCTCAGGCGAAGCGCTTCGCTGGCCACCAAGGTCTTTATCCAGAGAGACTACAGTGACGGCACCATCTGTCAGTTCCAGACCAAATTCCCGCCAGAGCTGGATAGCCGG aaaacaggcaatcataaaggtgttttaacttgtttatttacttattgtagGTCCACAATCTTCAGGAGCTCAGGCGAAGTGCTTCACTAGCCACCAAGGTCTTTATTCAGAGAGACTACAGTGACAGCACCATCTGTCAGTTCCAGACAAAATTCCCAC---AACTGGATAGCCAGgtaaaatcagctctaagggattagcgccattaacttcactgctggaactt Alignment from Exonerate_protein2genome GTCCACAATCTTCAGGAGCTCAGGCGAAGCGCTTCGCTGGCCACCAAGGTCTTTATCCAGAGAGACTACAGTGACGGCACCATCTGTCAGTTCCAGACCAAATTCCCGCCAGAGCTGGATAGCCGG aaaacaggcaatcataaaggtgttttaacttgtttatttacttattgtagGTCCACAATCTTCAGGAGCTCAGGCGAAGTGCTTCACTAGCCACCAAGGTCTTTATTCAGAGAGACTACAGTGACAGCACCATCTGTCAGTTCCAGACAAAATTC---CCACAACTGGATAGCCAGgtaaaatcagctctaagggattagcgccattaacttcactgctggaactt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCCACTGAGGTCCACAATCTTCAGGAGCTCAGGCGAAGCGCTTCGCTGGCCACCAAGGTCTTTATCCAGAGAGACTACAGTGACGGCACCATCTGTCAGTTCCAGACCAAATTCCCGCCAGAGCTGGATAGCCGG aaaacaggcaatcataaaggtgttttaacttgtttatttacttattgtag---------GTCCACAATCTTCAGGAGCTCAGGCGAAGTGCTTCACTAGCCACCAAGGTCTTTATTCAGAGAGACTACAGTGACAGCACCATCTGTCAGTTCCAGACAAAATTCCCA---CAACTGGATAGCCAGgtaaaatcagctctaagggattagcgccattaacttcactgctggaactt #### Got1_ID8751_4 --> 2 - 0 Original Alignment agAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG gttttatatctccattaataatggataaagcctcctctctctgtccacagagAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGATATTCGTCCCTATTGCTACTGGGATGCTGAGAAAAGAGGATTAGACCTTCAGGGTTTCCTTAATGATCTGGAGgtaacagaagataagaatagatgcccaggcttagtgcaggagggttttcc Alignment from CESAR agAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG gttttatatctccattaataatggataaagcctcctctctctgtccacagagAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGATATTCGTCCCTATTGCTACTGGGATGCTGAGAAAAGAGGATTAGACCTTCAGGGTTTCCTTAATGATCTGGAGgtaacagaagataagaatagatgcccaggcttagtgcaggagggttttcc Alignment from Spaln_aa2Genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG gttttatatctccattaataatggataaagcctcctctctctgtccacagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGATATTCGTCCCTATTGCTACTGGGATGCTGAGAAAAGAGGATTAGACCTTCAGGGTTTCCTTAATGATCTGGAGgtaacagaagataagaatagatgcccaggcttagtgcaggagggttttcc Alignment from Spaln_nt2Genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG gttttatatctccattaataatggataaagcctcctctctctgtccacagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGATATTCGTCCCTATTGCTACTGGGATGCTGAGAAAAGAGGATTAGACCTTCAGGGTTTCCTTAATGATCTGGAGgtaacagaagataagaatagatgcccaggcttagtgcaggagggttttcc Alignment from Pairagon AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG gttttatatctccattaataatggataaagcctcctctctctgtccacagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGATATTCGTCCCTATTGCTACTGGGATGCTGAGAAAAGAGGATTAGACCTTCAGGGTTTCCTTAATGATCTGGAGgtaacagaagataagaatagatgcccaggcttagtgcaggagggttttcc Alignment from Exonerate_protein2genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG gttttatatctccattaataatggataaagcctcctctctctgtccacagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGATATTCGTCCCTATTGCTACTGGGATGCTGAGAAAAGAGGATTAGACCTTCAGGGTTTCCTTAATGATCTGGAGgtaacagaagataagaatagatgcccaggcttagtgcaggagggttttcc Alignment from Exonerate_coding2genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG gttttatatctccattaataatggataaagcctcctctctctgtccacagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGATATTCGTCCCTATTGCTACTGGGATGCTGAGAAAAGAGGATTAGACCTTCAGGGTTTCCTTAATGATCTGGAGgtaacagaagataagaatagatgcccaggcttagtgcaggagggttttcc Alignment from GeneWise AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG gttttatatctccattaataatggataaagcctcctctctctgtccacagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGATATTCGTCCCTATTGCTACTGGGATGCTGAGAAAAGAGGATTAGACCTTCAGGGTTTCCTTAATGATCTGGAGgtaacagaagataagaatagatgcccaggcttagtgcaggagggttttcc #### Got1_ID8753_2 --> 2 - 0 Original Alignment cgTACCGCACAGATGAATCTCAGCCCTGGGTTTTGCCAGTAGTGAGGAAGGTCGAACAGAAGATTGCTAACGACAACAGCCTCAACCACGAGTACCTGCCCATCCTGGGCCTGGCAGAGTTCCGGAGCTGTGCTTCTCGCCTAGTTCTTGGGGACAACAGCCTGGCTATCAGGGAGAATCGG gcttctttataaatggattgacagcatgctgtctcttcttccaccctcagcaTACCGAACAGATGAATCTTATCCTTGT---TTACCCGTTGTGAGGAAGCTGGAACAAAAGATTGCTAATGACAACAGTCTCAATCATGACTTTCTGCCTATCCTGGGCCCAGCTGAGTTCTGCAGTCGAGCCTCCCGACTTCTACTTGGTGATAACAGCCTGGCTGTTAGAGAGAACTGGgtgagtgagataggcaaatccaagacagaaggttaacaaggacactgagg Alignment from CESAR cgTACCGCACAGATGAATCTCAGCCCTGGGTTTTGCCAGTAGTGAGGAAGGTCGAACAGAAGATTGCTAACGACAACAGCCTCAACCACGAGTACCTGCCCATCCTGGGCCTGGCAGAGTTCCGGAGCTGTGCTTCTCGCCTAGTTCTTGGGGACAACAGCCTGGCTATCAGGGAGAATCGG gcttctttataaatggattgacagcatgctgtctcttcttccaccctcagcaTACCGAACAGATGAATCTTATCCTTGT---TTACCCGTTGTGAGGAAGCTGGAACAAAAGATTGCTAATGACAACAGTCTCAATCATGACTTTCTGCCTATCCTGGGCCCAGCTGAGTTCTGCAGTCGAGCCTCCCGACTTCTACTTGGTGATAACAGCCTGGCTGTTAGAGAGAACTGGgtgagtgagataggcaaatccaagacagaaggttaacaaggacactgagg Alignment from Spaln_aa2Genome CGTACCGCACAGATGAATCTCAGCCCTGGGTTTTGCCAGTAGTGAGGAAGGTCGAACAGAAGATTGCTAACGACAACAGCCTCAACCACGAGTACCTGCCCATCCTGGGCCTGGCAGAGTTCCGGAGCTGTGCTTCTCGCCTAGTTCTTGGGGACAACAGCCTGGCTATCAGGGAGAATCGG gcttctttataaatggattgacagcatgctgtctcttcttccaccctcagCATACCGAACAGATGAATCTTATCCTTGT---TTACCCGTTGTGAGGAAGCTGGAACAAAAGATTGCTAATGACAACAGTCTCAATCATGACTTTCTGCCTATCCTGGGCCCAGCTGAGTTCTGCAGTCGAGCCTCCCGACTTCTACTTGGTGATAACAGCCTGGCTGTTAGAGAGAACTGGgtgagtgagataggcaaatccaagacagaaggttaacaaggacactgagg Alignment from Spaln_nt2Genome CGTACCGCACAGATGAATCTCAGCCCTGGGTTTTGCCAGTAGTGAGGAAGGTCGAACAGAAGATTGCTAACGACAACAGCCTCAACCACGAGTACCTGCCCATCCTGGGCCTGGCAGAGTTCCGGAGCTGTGCTTCTCGCCTAGTTCTTGGGGACAACAGCCTGGCTATCAGGGAGAATCGG gcttctttataaatggattgacagcatgctgtctcttcttccaccctcagCATACCGAACAGATGAATCTTATCCTTG---TTTACCCGTTGTGAGGAAGCTGGAACAAAAGATTGCTAATGACAACAGTCTCAATCATGACTTTCTGCCTATCCTGGGCCCAGCTGAGTTCTGCAGTCGAGCCTCCCGACTTCTACTTGGTGATAACAGCCTGGCTGTTAGAGAGAACTGGgtgagtgagataggcaaatccaagacagaaggttaacaaggacactgagg Alignment from Pairagon CGTACCGCACAGATGAATCTCAGCCCTGGGTTTTGCCAGTAGTGAGGAAGGTCGAACAGAAGATTGCTAACGACAACAGCCTCAACCACGAGTACCTGCCCATCCTGGGCCTGGCAGAGTTCCGGAGCTGTGCTTCTCGCCTAGTTCTTGGGGACAACAGCCTGGCTATCAGGGAGAATCGG gcttctttataaatggattgacagcatgctgtctcttcttccaccctcagCATACCGAACAGATGAATCTTATCCTTG---TTTACCCGTTGTGAGGAAGCTGGAACAAAAGATTGCTAATGACAACAGTCTCAATCATGACTTTCTGCCTATCCTGGGCCCAGCTGAGTTCTGCAGTCGAGCCTCCCGACTTCTACTTGGTGATAACAGCCTGGCTGTTAGAGAGAACTGGgtgagtgagataggcaaatccaagacagaaggttaacaaggacactgagg Alignment from Exonerate_protein2genome CGTACCGCACAGATGAATCTCAGCCCTGGGTTTTGCCAGTAGTGAGGAAGGTCGAACAGAAGATTGCTAACGACAACAGCCTCAACCACGAGTACCTGCCCATCCTGGGCCTGGCAGAGTTCCGGAGCTGTGCTTCTCGCCTAGTTCTTGGGGACAACAGCCTGGCTATCAGGGAGAATCGG gcttctttataaatggattgacagcatgctgtctcttcttccaccctcagCATACCGAACAGATGAATCTTATCCT---TGTTTACCCGTTGTGAGGAAGCTGGAACAAAAGATTGCTAATGACAACAGTCTCAATCATGACTTTCTGCCTATCCTGGGCCCAGCTGAGTTCTGCAGTCGAGCCTCCCGACTTCTACTTGGTGATAACAGCCTGGCTGTTAGAGAGAACTGGgtgagtgagataggcaaatccaagacagaaggttaacaaggacactgagg Alignment from Exonerate_coding2genome CGTACCGCACAGATGAATCTCAGCCCTGGGTTTTGCCAGTAGTGAGGAAGGTCGAACAGAAGATTGCTAACGACAACAGCCTCAACCACGAGTACCTGCCCATCCTGGGCCTGGCAGAGTTCCGGAGCTGTGCTTCTCGCCTAGTTCTTGGGGACAACAGCCTGGCTATCAGGGAGAATCGG gcttctttataaatggattgacagcatgctgtctcttcttccaccctcagCATACCGAACAGATGAATCTTATCCT---TGTTTACCCGTTGTGAGGAAGCTGGAACAAAAGATTGCTAATGACAACAGTCTCAATCATGACTTTCTGCCTATCCTGGGCCCAGCTGAGTTCTGCAGTCGAGCCTCCCGACTTCTACTTGGTGATAACAGCCTGGCTGTTAGAGAGAACTGGgtgagtgagataggcaaatccaagacagaaggttaacaaggacactgagg Alignment from GeneWise CGTACCGCACAGATGAATCTCAGCCCTGGGTTTTGCCAGTAGTGAGGAAGGTCGAACAGAAGATTGCTAACGACAACAGCCTCAACCACGAGTACCTGCCCATCCTGGGCCTGGCAGAGTTCCGGAGCTGTGCTTCTCGCCTAGTTCTTGGGGACAACAGCCTGGCTATCAGGGAGAATCGG gcttctttataaatggattgacagcatgctgtctcttcttccaccctcagCATACCGAACAGATGAATCTTATCCT---TGTTTACCCGTTGTGAGGAAGCTGGAACAAAAGATTGCTAATGACAACAGTCTCAATCATGACTTTCTGCCTATCCTGGGCCCAGCTGAGTTCTGCAGTCGAGCCTCCCGACTTCTACTTGGTGATAACAGCCTGGCTGTTAGAGAGAACTGGgtgagtgagataggcaaatccaagacagaaggttaacaaggacactgagg #### Gpam_ID11537_12 --> 1 - 1 Original Alignment aCCGAATGATGTTGCTGATGAACATCAAGACCTATCCAGTAACGAGTCCAGAAACCCAGCAGACGAAGCCTTCCGACGAAGGCTGATTGCAAACCTGGCTGAGCACATTCTCTTCa tgtatgaatcatgacaggttgggtgaggatgtttgctctctgtttggcagaCCAAATGATGTAGTTGATGAATACCATGATCTGTCCACTAATGAGTCAAGAAACCCAGCAGATGAGGCGTTTTGG------TTGATTGAAAACCTGACTGAATGTATTCTTTACagtaacaaaacctggtttccataccaaacacacttactgcctctacaaata Alignment from CESAR aCCGAATGATGTTGCTGATGAACATCAAGACCTATCCAGTAACGAGTCCAGAAACCCAGCAGACGAAGCCTTCCGACGAAGGCTGATTGCAAACCTGGCTGAGCACATTCTCTTCa tgtatgaatcatgacaggttgggtgaggatgtttgctctctgtttggcagaCCAAATGATGTAGTTGATGAATACCATGATCTGTCCACTAATGAGTCAAGAAACCCAGCAGATGAGGCGTTT------TGGTTGATTGAAAACCTGACTGAATGTATTCTTTACagtaacaaaacctggtttccataccaaacacacttactgcctctacaaata Alignment from Spaln_aa2Genome ACCGAATGATGTTGCTGATGAACATCAAGACCTATCCAGTAACGAGTCCAGAAACCCAGCAGACGAAGCCTTCCGACGAAGGCTGATTGCAAACCTGGCTGAGCACATTCTCTTCA tgtatgaatcatgacaggttgggtgaggatgtttgctctctgtttggcagACCAAATGATGTAGTTGATGAATACCATGATCTGTCCACTAATGAGTCAAGAAACCCAGCAGATGAGGCGTTT------TGGTTGATTGAAAACCTGACTGAATGTATTCTTTACAgtaacaaaacctggtttccataccaaacacacttactgcctctacaaata Alignment from Spaln_nt2Genome ACCGAATGATGTTGCTGATGAACATCAAGACCTATCCAGTAACGAGTCCAGAAACCCAGCAGACGAAGCCTTCCGACGAAGGCTGATTGCAAACCTGGCTGAGCACATTCTCTTCA tgtatgaatcatgacaggttgggtgaggatgtttgctctctgtttggcagACCAAATGATGTAGTTGATGAATACCATGATCTGTCCACTAATGAGTCAAGAAACCCAGCAGATGAGGCGTT------TTGGTTGATTGAAAACCTGACTGAATGTATTCTTTACAgtaacaaaacctggtttccataccaaacacacttactgcctctacaaata Alignment from Pairagon ACCGAATGATGTTGCTGATGAACATCAAGACCTATCCAGTAACGAGTCCAGAAACCCAGCAGACGAAGCCTTCCGACGAAGGCTGATTGCAAACCTGGCTGAGCACATTCTCTTCA tgtatgaatcatgacaggttgggtgaggatgtttgctctctgtttggcagACCAAATGATGTAGTTGATGAATACCATGATCTGTCCACTAATGAGTCAAGAAACCCAGCAGATGAGGCGTTTT------GGTTGATTGAAAACCTGACTGAATGTATTCTTTACAgtaacaaaacctggtttccataccaaacacacttactgcctctacaaata Alignment from Exonerate_protein2genome ACCGAATGATGTTGCTGATGAACATCAAGACCTATCCAGTAACGAGTCCAGAAACCCAGCAGACGAAGCCTTCCGACGAAGGCTGATTGCAAACCTGGCTGAGCACATTCTCTTCA tgtatgaatcatgacaggttgggtgaggatgtttgctctctgtttggcagACCAAATGATGTAGTTGATGAATACCATGATCTGTCCACTAATGAGTCAAGAAACCCAGCAGATGAGGCGTTT------TGGTTGATTGAAAACCTGACTGAATGTATTCTTTACAgtaacaaaacctggtttccataccaaacacacttactgcctctacaaata Alignment from Exonerate_coding2genome ACCGAATGATGTTGCTGATGAACATCAAGACCTATCCAGTAACGAGTCCAGAAACCCAGCAGACGAAGCCTTCCGACGAAGGCTGATTGCAAACCTGGCTGAGCACATTCTCTTCACCGCCAGCAAGTCCTGCGCTATCATGTCCACCCACATTGTGGCC tgtatgaatcatgacaggttgggtgaggatgtttgctctctgtttggcagACCAAATGATGTAGTTGATGAATACCATGATCTGTCCACTAATGAGTCAAGAAACCCAGCAGATGAGGCGTTT------TGGTTGATTGAAAACCTGACTGAATGTATTCTTTAC---AGTAACAAAACCTGGTTTCCATACCAAACACACTTACTGCCTctacaaata Alignment from GeneWise ACCGAATGATGTTGCTGATGAACATCAAGACCTATCCAGTAACGAGTCCAGAAACCCAGCAGACGAAGCCTTCCGACGAAGGCTGATTGCAAACCTGGCTGAGCACATTCTCTTCA tgtatgaatcatgacaggttgggtgaggatgtttgctctctgtttggcagACCAAATGATGTAGTTGATGAATACCATGATCTGTCCACTAATGAGTCAAGAAACCCAGCAGATGAGGCGTTTTGG------TTGATTGAAAACCTGACTGAATGTATTCTTTACAgtaacaaaacctggtttccataccaaacacacttactgcctctacaaata #### Gpam_ID11538_11 --> 0 - 2 Original Alignment GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAag aaccagtaccagccgctgcaaaaacatgatgactttccctctggttccagGAGTACCTAGAAGGACAGGGCCAGAAGCCTGTATCAGCCCCCCTTTCCTTAGAACAAGCACTATTACCAGCAATCCTTCCCTCAaggtaagcatgcgtacttcttggcctcaacatattccctaatacacattctg Alignment from CESAR GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAag aaccagtaccagccgctgcaaaaacatgatgactttccctctggttccagGAGTACCTAGAAGGACAGGGCCAGAAGCCTGTATCAGCCCCCCTTTCCTTAGAACAAGCACTATTACCAGCAATCCTTCCCTCAaggtaagcatgcgtacttcttggcctcaacatattccctaatacacattctg Alignment from Spaln_aa2Genome GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG aaccagtaccagccgctgcaaaaacatgatgactttccctctggttccagGAGTACCTAGAAGGACAGGGCCAGAAGCCTGTATCAGCCCCCCTTTCCTTAGAACAAGCACTATTACCAGCAATCCTTCCCTCAAGgtaagcatgcgtacttcttggcctcaacatattccctaatacacattctg Alignment from Spaln_nt2Genome GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG aaccagtaccagccgctgcaaaaacatgatgactttccctctggttccagGAGTACCTAGAAGGACAGGGCCAGAAGCCTGTATCAGCCCCCCTTTCCTTAGAACAAGCACTATTACCAGCAATCCTTCCCTCAAGgtaagcatgcgtacttcttggcctcaacatattccctaatacacattctg Alignment from Pairagon GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG aaccagtaccagccgctgcaaaaacatgatgactttccctctggttccagGAGTACCTAGAAGGACAGGGCCAGAAGCCTGTATCAGCCCCCCTTTCCTTAGAACAAGCACTATTACCAGCAATCCTTCCCTCAAGgtaagcatgcgtacttcttggcctcaacatattccctaatacacattctg Alignment from Exonerate_protein2genome GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG aaccagtaccagccgctgcaaaaacatgatgactttccctctggttccagGAGTACCTAGAAGGACAGGGCCAGAAGCCTGTATCAGCCCCCCTTTCCTTAGAACAAGCACTATTACCAGCAATCCTTCCCTCAAGgtaagcatgcgtacttcttggcctcaacatattccctaatacacattctg Alignment from Exonerate_coding2genome GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG aaccagtaccagccgctgcaaaaacatgatgactttccctctggttccagGAGTACCTAGAAGGACAGGGCCAGAAGCCTGTATCAGCCCCCCTTTCCTTAGAACAAGCACTATTACCAGCAATCCTTCCCTCAAGgtaagcatgcgtacttcttggcctcaacatattccctaatacacattctg Alignment from GeneWise GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG aaccagtaccagccgctgcaaaaacatgatgactttccctctggttccagGAGTACCTAGAAGGACAGGGCCAGAAGCCTGTATCAGCCCCCCTTTCCTTAGAACAAGCACTATTACCAGCAATCCTTCCCTCAAGgtaagcatgcgtacttcttggcctcaacatattccctaatacacattctg #### Gpam_ID11541_8 --> 1 - 0 Original Alignment tACCTTGATTCACAAGCTTGGGGGCTTTTTCATAAGACGGAGGCTCGATGAAACCCCAGATGGACGCAAAGACATTCTGTACAGAGCGTTGCTCCATGGG tgctatactattgcactagcatatcatttaaaatgctcaatgtcctttagtACTCTGGTTCACAAGCTTGGAGGACTTTTTATAAGACGGAGGCTGGATGAC---CCTGATGGACGCAGAGACATCCTGTACAGAGCATTACTCCATGGGgcaagtttttacaaatggactcttctcacgaaaacatgcttaagattggg Alignment from CESAR tACCTTGATTCACAAGCTTGGGGGCTTTTTCATAAGACGGAGGCTCGATGAAACCCCAGATGGACGCAAAGACATTCTGTACAGAGCGTTGCTCCATGGG tgctatactattgcactagcatatcatttaaaatgctcaatgtcctttagtACTCTGGTTCACAAGCTTGGAGGACTTTTTATAAGACGGAGGCTGGATGAC---CCTGATGGACGCAGAGACATCCTGTACAGAGCATTACTCCATGGGgcaagtttttacaaatggactcttctcacgaaaacatgcttaagattggg Alignment from Spaln_aa2Genome TACCTTGATTCACAAGCTTGGGGGCTTTTTCATAAGACGGAGGCTCGATGAAACCCCAGATGGACGCAAAGACATTCTGTACAGAGCGTTGCTCCATGGG tgctatactattgcactagcatatcatttaaaatgctcaatgtcctttagTACTCTGGTTCACAAGCTTGGAGGACTTTTTATAAGACGGAGGCTGGATGAC---CCTGATGGACGCAGAGACATCCTGTACAGAGCATTACTCCATGGGgcaagtttttacaaatggactcttctcacgaaaacatgcttaagattggg Alignment from Spaln_nt2Genome TACCTTGATTCACAAGCTTGGGGGCTTTTTCATAAGACGGAGGCTCGATGAAACCCCAGATGGACGCAAAGACATTCTGTACAGAGCGTTGCTCCATGGG tgctatactattgcactagcatatcatttaaaatgctcaatgtcctttagTACTCTGGTTCACAAGCTTGGAGGACTTTTTATAAGACGGAGGCTGGATGA---CCCTGATGGACGCAGAGACATCCTGTACAGAGCATTACTCCATGGGgcaagtttttacaaatggactcttctcacgaaaacatgcttaagattggg Alignment from Pairagon TACCTTGATTCACAAGCTTGGGGGCTTTTTCATAAGACGGAGGCTCGATGAAACCCCAGATGGACGCAAAGACATTCTGTACAGAGCGTTGCTCCATGGG tgctatactattgcactagcatatcatttaaaatgctcaatgtcctttagTACTCTGGTTCACAAGCTTGGAGGACTTTTTATAAGACGGAGGCTGGATGA---CCCTGATGGACGCAGAGACATCCTGTACAGAGCATTACTCCATGGGgcaagtttttacaaatggactcttctcacgaaaacatgcttaagattggg Alignment from Exonerate_protein2genome TACCTTGATTCACAAGCTTGGGGGCTTTTTCATAAGACGGAGGCTCGATGAAACCCCAGATGGACGCAAAGACATTCTGTACAGAGCGTTGCTCCATGGG tgctatactattgcactagcatatcatttaaaatgctcaatgtcctttagTACTCTGGTTCACAAGCTTGGAGGACTTTTTATAAGACGGAGGCTGGATGAC---CCTGATGGACGCAGAGACATCCTGTACAGAGCATTACTCCATGGGgcaagtttttacaaatggactcttctcacgaaaacatgcttaagattggg Alignment from Exonerate_coding2genome TACCTTGATTCACAAGCTTGGGGGCTTTTTCATAAGACGGAGGCTCGATGAAACCCCAGATGGACGCAAAGACATTCTGTACAGAGCGTTGCTCCATGGG tgctatactattgcactagcatatcatttaaaatgctcaatgtcctttagTACTCTGGTTCACAAGCTTGGAGGACTTTTTATAAGACGGAGGCTGGATGAC---CCTGATGGACGCAGAGACATCCTGTACAGAGCATTACTCCATGGGgcaagtttttacaaatggactcttctcacgaaaacatgcttaagattggg Alignment from GeneWise TACCTTGATTCACAAGCTTGGGGGCTTTTTCATAAGACGGAGGCTCGATGAAACCCCAGATGGACGCAAAGACATTCTGTACAGAGCGTTGCTCCATGGGCATGTAG tgctatactattgcactagcatatcatttaaaatgctcaatgtcctttagTACTCTGGTTCACAAGCTTGGAGGACTTTTTATAAGACGGAGGCTGGATGAC---CCTGATGGACGCAGAGACATCCTGTACAGAGCATTACTCCATGGG---GCAAgtttttacaaatggactcttctcacgaaaacatgcttaagatt #### Gpam_ID11545_4 --> 1 - 2 Original Alignment gCACAGAGGATGGCTGGCGAGACGGCTGTCTTACATCCTTTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCCACCAGTGTTACTGAGAATGTACTGAGCAGCAGCag catcaatgatatggtgtgagtcacctttttacctcatttcctctttgcagaCACAGAGGATGGTTGGCAAGACGGCTTTCTTATATACTGTTTGTCCAGGAGCGAGATGTCCATAAGGGCATGCTTGCAACCAGTGTTACTGAGAATGTACTTAGTAGCAGCaggtgagtgcagtttgatgaagaaacagttatagaaaattaatgacaactcc Alignment from CESAR gCACAGAGGATGGCTGGCGAGACGGCTGTCTTACATCCTTTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCCACCAGTGTTACTGAGAATGTACTGAGCAGCAGCag catcaatgatatggtgtgagtcacctttttacctcatttcctctttgcagaCACAGAGGATGGTTGGCAAGACGGCTTTCTTATATACTGTTTGTCCAGGAGCGAGATGTCCATAAGGGCATGCTTGCAACCAGTGTTACTGAGAATGTACTTAGTAGCAGCaggtgagtgcagtttgatgaagaaacagttatagaaaattaatgacaactcc Alignment from Spaln_aa2Genome GCACAGAGGATGGCTGGCGAGACGGCTGTCTTACATCCTTTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCCACCAGTGTTACTGAGAATGTACTGAGCAGCAGCAG catcaatgatatggtgtgagtcacctttttacctcatttcctctttgcagACACAGAGGATGGTTGGCAAGACGGCTTTCTTATATACTGTTTGTCCAGGAGCGAGATGTCCATAAGGGCATGCTTGCAACCAGTGTTACTGAGAATGTACTTAGTAGCAGCAGgtgagtgcagtttgatgaagaaacagttatagaaaattaatgacaactcc Alignment from Spaln_nt2Genome GCACAGAGGATGGCTGGCGAGACGGCTGTCTTACATCCTTTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCCACCAGTGTTACTGAGAATGTACTGAGCAGCAGCAG catcaatgatatggtgtgagtcacctttttacctcatttcctctttgcagACACAGAGGATGGTTGGCAAGACGGCTTTCTTATATACTGTTTGTCCAGGAGCGAGATGTCCATAAGGGCATGCTTGCAACCAGTGTTACTGAGAATGTACTTAGTAGCAGCAGgtgagtgcagtttgatgaagaaacagttatagaaaattaatgacaactcc Alignment from Pairagon GCACAGAGGATGGCTGGCGAGACGGCTGTCTTACATCCTTTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCCACCAGTGTTACTGAGAATGTACTGAGCAGCAGCAG catcaatgatatggtgtgagtcacctttttacctcatttcctctttgcagACACAGAGGATGGTTGGCAAGACGGCTTTCTTATATACTGTTTGTCCAGGAGCGAGATGTCCATAAGGGCATGCTTGCAACCAGTGTTACTGAGAATGTACTTAGTAGCAGCAGgtgagtgcagtttgatgaagaaacagttatagaaaattaatgacaactcc Alignment from Exonerate_protein2genome GCACAGAGGATGGCTGGCGAGACGGCTGTCTTACATCCTTTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCCACCAGTGTTACTGAGAATGTACTGAGCAGCAGCAG catcaatgatatggtgtgagtcacctttttacctcatttcctctttgcagACACAGAGGATGGTTGGCAAGACGGCTTTCTTATATACTGTTTGTCCAGGAGCGAGATGTCCATAAGGGCATGCTTGCAACCAGTGTTACTGAGAATGTACTTAGTAGCAGCAGgtgagtgcagtttgatgaagaaacagttatagaaaattaatgacaactcc Alignment from Exonerate_coding2genome GCACAGAGGATGGCTGGCGAGACGGCTGTCTTACATCCTTTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCCACCAGTGTTACTGAGAATGTACTGAGCAGCAGCAG catcaatgatatggtgtgagtcacctttttacctcatttcctctttgcagACACAGAGGATGGTTGGCAAGACGGCTTTCTTATATACTGTTTGTCCAGGAGCGAGATGTCCATAAGGGCATGCTTGCAACCAGTGTTACTGAGAATGTACTTAGTAGCAGCAGgtgagtgcagtttgatgaagaaacagttatagaaaattaatgacaactcc Alignment from GeneWise GCACAGAGGATGGCTGGCGAGACGGCTGTCTTACATCCTTTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCCACCAGTGTTACTGAGAATGTACTGAGCAGCAGCAG catcaatgatatggtgtgagtcacctttttacctcatttcctctttgcagACACAGAGGATGGTTGGCAAGACGGCTTTCTTATATACTGTTTGTCCAGGAGCGAGATGTCCATAAGGGCATGCTTGCAACCAGTGTTACTGAGAATGTACTTAGTAGCAGCAGgtgagtgcagtttgatgaagaaacagttatagaaaattaatgacaactcc #### Gpr137_ID1887_4 --> 0 - 0 Original Alignment GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG taaacatacctagaatcctgggacccctacatctctttcctttttctcagGGAACAAGTGTATGTCAGGTAGCAGCAATAGGG---CCCATGATCTTGATTTATGCCAGCCGGGCCTGTTACAACCTAGCAGCCTTGGCCTTGGCACCTCAGAGTCGGCTAGATGCCTTTGATTATGACTGGTATAATGTCTCAGACCAGgcaggttatatagtattctgggctaacagggttgcacattagcaaattaa Alignment from CESAR GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG taaacatacctagaatcctgggacccctacatctctttcctttttctcagGGAACAAGTGTATGTCAGGTAGCAGCAATAGGG---CCCATGATCTTGATTTATGCCAGCCGGGCCTGTTACAACCTAGCAGCCTTGGCCTTGGCACCTCAGAGTCGGCTAGATGCCTTTGATTATGACTGGTATAATGTCTCAGACCAGgcaggttatatagtattctgggctaacagggttgcacattagcaaattaa Alignment from Spaln_aa2Genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG taaacatacctagaatcctgggacccctacatctctttcctttttctcagGGAACAAGTGTATGTCAGGTAGCAGCAATA---GGGCCCATGATCTTGATTTATGCCAGCCGGGCCTGTTACAACCTAGCAGCCTTGGCCTTGGCACCTCAGAGTCGGCTAGATGCCTTTGATTATGACTGGTATAATGTCTCAGACCAGgcaggttatatagtattctgggctaacagggttgcacattagcaaattaa Alignment from Spaln_nt2Genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG taaacatacctagaatcctgggacccctacatctctttcctttttctcagGGAACAAGTGTATGTCAGGTAGCAGCAATAGGG---CCCATGATCTTGATTTATGCCAGCCGGGCCTGTTACAACCTAGCAGCCTTGGCCTTGGCACCTCAGAGTCGGCTAGATGCCTTTGATTATGACTGGTATAATGTCTCAGACCAGgcaggttatatagtattctgggctaacagggttgcacattagcaaattaa Alignment from Pairagon GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG taaacatacctagaatcctgggacccctacatctctttcctttttctcagGGAACAAGTGTATGTCAGGTAGCAGCAATAGGG---CCCATGATCTTGATTTATGCCAGCCGGGCCTGTTACAACCTAGCAGCCTTGGCCTTGGCACCTCAGAGTCGGCTAGATGCCTTTGATTATGACTGGTATAATGTCTCAGACCAGgcaggttatatagtattctgggctaacagggttgcacattagcaaattaa Alignment from Exonerate_protein2genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG taaacatacctagaatcctgggacccctacatctctttcctttttctcagGGAACAAGTGTATGTCAGGTAGCAGCAATA---GGGCCCATGATCTTGATTTATGCCAGCCGGGCCTGTTACAACCTAGCAGCCTTGGCCTTGGCACCTCAGAGTCGGCTAGATGCCTTTGATTATGACTGGTATAATGTCTCAGACCAGgcaggttatatagtattctgggctaacagggttgcacattagcaaattaa Alignment from Exonerate_coding2genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG taaacatacctagaatcctgggacccctacatctctttcctttttctcagGGAACAAGTGTATGTCAGGTAGCAGCAATA---GGGCCCATGATCTTGATTTATGCCAGCCGGGCCTGTTACAACCTAGCAGCCTTGGCCTTGGCACCTCAGAGTCGGCTAGATGCCTTTGATTATGACTGGTATAATGTCTCAGACCAGgcaggttatatagtattctgggctaacagggttgcacattagcaaattaa Alignment from GeneWise GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAGGCAG taaacatacctagaatcctgggacccctacatctctttcctttttctcagGGAACAAGTGTATGTCAGGTAGCAGCAATAGGG---CCCATGATCTTGATTTATGCCAGCCGGGCCTGTTACAACCTAGCAGCCTTGGCCTTGGCACCTCAGAGTCGGCTAGATGCCTTTGATTATGACTGGTATAATGTCTCAGACCAGGCAGgttatatagtattctgggctaacagggttgcacattagcaaattaa #### Gpr137_ID1889_2 --> 0 - 2 Original Alignment GTGGTGTTCAAGGCCAAGGCGAAGCGTCGGCCAGAGATGAGCCGAGGCtt aggaagggtaagcatacagataatagagggtgcttgtttgtatgcatcagGTGGTATTCAAGGCCAAAGCTAAGCGTCGACCTGTAATGAGCCGGGGActgtgagggtgatggtaatgtgtcatttcaatgagtcaggtgggccctgagt Alignment from CESAR GTGGTGTTCAAGGCCAAGGCGAAGCGTCGGCCAGAGATGAGCCGAGGCtt aggaagggtaagcatacagataatagagggtgcttgtttgtatgcatcagGTGGTATTCAAGGCCAAAGCTAAGCGTCGACCTGTAATGAGCCGGGGActgtgagggtgatggtaatgtgtcatttcaatgagtcaggtgggccctgagt Alignment from Spaln_aa2Genome GTGGTGTTCAAGGCCAAGGCGAAGCGTCGGCCAGAGATGAGCCGAGGCTT aggaagggtaagcatacagataatagagggtgcttgtttgtatgcatcagGTGGTATTCAAGGCCAAAGCTAAGCGTCGACCTGTAATGAGCCGGGGACTgtgagggtgatggtaatgtgtcatttcaatgagtcaggtgggccctgagt Alignment from Spaln_nt2Genome GTGGTGTTCAAGGCCAAGGCGAAGCGTCGGCCAGAGATGAGCCGAGGCTT aggaagggtaagcatacagataatagagggtgcttgtttgtatgcatcagGTGGTATTCAAGGCCAAAGCTAAGCGTCGACCTGTAATGAGCCGGGGACTgtgagggtgatggtaatgtgtcatttcaatgagtcaggtgggccctgagt Alignment from Pairagon GTGGTGTTCAAGGCCAAGGCGAAGCGTCGGCCAGAGATGAGCCGAGGCTT aggaagggtaagcatacagataatagagggtgcttgtttgtatgcatcagGTGGTATTCAAGGCCAAAGCTAAGCGTCGACCTGTAATGAGCCGGGGACTgtgagggtgatggtaatgtgtcatttcaatgagtcaggtgggccctgagt Alignment from Exonerate_protein2genome GTGGTGTTCAAGGCCAAGGCGAAGCGTCGGCCAGAGATGAGCCGAGGCTT aggaagggtaagcatacagataatagagggtgcttgtttgtatgcatcagGTGGTATTCAAGGCCAAAGCTAAGCGTCGACCTGTAATGAGCCGGGGACTgtgagggtgatggtaatgtgtcatttcaatgagtcaggtgggccctgagt Alignment from Exonerate_coding2genome aggaagggtaagcatacagataatagagggtgcttgtttgtatgcatcaggtggtattcaaggccaaagctaagcgtcgacctgtaatgagccggggactgtgagggtgatggtaatgtgtcatttcaatgagtcaggtgggccctgagt Alignment from GeneWise GTGGTGTTCAAGGCCAAGGCGAAGCGTCGGCCAGAGATGAGCCGAGGCTT aggaagggtaagcatacagataatagagggtgcttgtttgtatgcatcagGTGGTATTCAAGGCCAAAGCTAAGCGTCGACCTGTAATGAGCCGGGGACTgtgagggtgatggtaatgtgtcatttcaatgagtcaggtgggccctgagt #### Grk5_ID13400_3 --> 2 - 0 Original Alignment acAGAGATTACTACAGTCTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGAGTGCTACATTCAGTTCCTGGACTTAGTG tgatttgaggatgggtggataatacttcccatcccacgcctgctgagcagacAGAGATTACTATAGTCTATGTGACAAGCAACCAATTGGGAGATTGCTTTTTCGGCAGTTCTGTGAGATTAGGCCGGGGTTGGTCTGCTATATTCAGTTCTTGCACCTTGTTgtaccaacctgccatatgatccctacaatgcaaagattctatttcaatca Alignment from CESAR acAGAGATTACTACAGTCTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGAGTGCTACATTCAGTTCCTGGACTTAGTG tgatttgaggatgggtggataatacttcccatcccacgcctgctgagcagacAGAGATTACTATAGTCTATGTGACAAGCAACCAATTGGGAGATTGCTTTTTCGGCAGTTCTGTGAGATTAGGCCGGGGTTGGTCTGCTATATTCAGTTCTTGCACCTTGTTgtaccaacctgccatatgatccctacaatgcaaagattctatttcaatca Alignment from Spaln_aa2Genome ACAGAGATTACTACAGTCTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGAGTGCTACATTCAGTTCCTGGACTTAGTG tgatttgaggatgggtggataatacttcccatcccacgcctgctgagcagACAGAGATTACTATAGTCTATGTGACAAGCAACCAATTGGGAGATTGCTTTTTCGGCAGTTCTGTGAGATTAGGCCGGGGTTGGTCTGCTATATTCAGTTCTTGCACCTTGTTgtaccaacctgccatatgatccctacaatgcaaagattctatttcaatca Alignment from Spaln_nt2Genome ACAGAGATTACTACAGTCTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGAGTGCTACATTCAGTTCCTGGACTTAGTG tgatttgaggatgggtggataatacttcccatcccacgcctgctgagcagACAGAGATTACTATAGTCTATGTGACAAGCAACCAATTGGGAGATTGCTTTTTCGGCAGTTCTGTGAGATTAGGCCGGGGTTGGTCTGCTATATTCAGTTCTTGCACCTTGTTgtaccaacctgccatatgatccctacaatgcaaagattctatttcaatca Alignment from Pairagon ACAGAGATTACTACAGTCTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGAGTGCTACATTCAGTTCCTGGACTTAGTG tgatttgaggatgggtggataatacttcccatcccacgcctgctgagcagACAGAGATTACTATAGTCTATGTGACAAGCAACCAATTGGGAGATTGCTTTTTCGGCAGTTCTGTGAGATTAGGCCGGGGTTGGTCTGCTATATTCAGTTCTTGCACCTTGTTgtaccaacctgccatatgatccctacaatgcaaagattctatttcaatca Alignment from Exonerate_protein2genome ACAGAGATTACTACAGTCTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGAGTGCTACATTCAGTTCCTGGACTTAGTG tgatttgaggatgggtggataatacttcccatcccacgcctgctgagcagACAGAGATTACTATAGTCTATGTGACAAGCAACCAATTGGGAGATTGCTTTTTCGGCAGTTCTGTGAGATTAGGCCGGGGTTGGTCTGCTATATTCAGTTCTTGCACCTTGTTgtaccaacctgccatatgatccctacaatgcaaagattctatttcaatca Alignment from Exonerate_coding2genome ACAGAGATTACTACAGTCTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGAGTGCTACATTCAGTTCCTGGACTTAGTG tgatttgaggatgggtggataatacttcccatcccacgcctgctgagcagACAGAGATTACTATAGTCTATGTGACAAGCAACCAATTGGGAGATTGCTTTTTCGGCAGTTCTGTGAGATTAGGCCGGGGTTGGTCTGCTATATTCAGTTCTTGCACCTTGTTgtaccaacctgccatatgatccctacaatgcaaagattctatttcaatca Alignment from GeneWise --GACAGAGATTACTACAGTCTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGAGTGCTACATTCAGTTCCTGGACTTAGTG tgatttgaggatgggtggataatacttcccatcccacgcctgctgagCAGACAGAGATTACTATAGTCTATGTGACAAGCAACCAATTGGGAGATTGCTTTTTCGGCAGTTCTGTGAGATTAGGCCGGGGTTGGTCTGCTATATTCAGTTCTTGCACCTTGTTgtaccaacctgccatatgatccctacaatgcaaagattctatttcaatca #### Grk5_ID13403_4 --> 0 - 0 Original Alignment GCAGAATATGAAATTACTCCAGATGAAAACCTTGGGGCGAAGGGGAAGGAAATAATGACCAAGTACCTCACTCCAAAG tgtgcatattccaacatcagtagtaaaaatgaaactttgcttttcaacagGCAGACTATGAAATTACTCCAGATGAAAATCTTGGAGCAAAAGGGAAGGAAACAATGACCAAGTACCTCACTCCAAGAgtgagttatccaaaactacttaatgcagtgtgttggcagcctatgctgtg Alignment from CESAR GCAGAATATGAAATTACTCCAGATGAAAACCTTGGGGCGAAGGGGAAGGAAATAATGACCAAGTACCTCACTCCAAAG tgtgcatattccaacatcagtagtaaaaatgaaactttgcttttcaacagGCAGACTATGAAATTACTCCAGATGAAAATCTTGGAGCAAAAGGGAAGGAAACAATGACCAAGTACCTCACTCCAAGAgtgagttatccaaaactacttaatgcagtgtgttggcagcctatgctgtg Alignment from Spaln_aa2Genome GCAGAATATGAAATTACTCCAGATGAAAACCTTGGGGCGAAGGGGAAGGAAATAATGACCAAGTACCTCACTCCAAAG tgtgcatattccaacatcagtagtaaaaatgaaactttgcttttcaacagGCAGACTATGAAATTACTCCAGATGAAAATCTTGGAGCAAAAGGGAAGGAAACAATGACCAAGTACCTCACTCCAAGAgtgagttatccaaaactacttaatgcagtgtgttggcagcctatgctgtg Alignment from Spaln_nt2Genome GCAGAATATGAAATTACTCCAGATGAAAACCTTGGGGCGAAGGGGAAGGAAATAATGACCAAGTACCTCACTCCAAAG tgtgcatattccaacatcagtagtaaaaatgaaactttgcttttcaacagGCAGACTATGAAATTACTCCAGATGAAAATCTTGGAGCAAAAGGGAAGGAAACAATGACCAAGTACCTCACTCCAAGAgtgagttatccaaaactacttaatgcagtgtgttggcagcctatgctgtg Alignment from Pairagon GCAGAATATGAAATTACTCCAGATGAAAACCTTGGGGCGAAGGGGAAGGAAATAATGACCAAGTACCTCACTCCAAAG tgtgcatattccaacatcagtagtaaaaatgaaactttgcttttcaacagGCAGACTATGAAATTACTCCAGATGAAAATCTTGGAGCAAAAGGGAAGGAAACAATGACCAAGTACCTCACTCCAAGAgtgagttatccaaaactacttaatgcagtgtgttggcagcctatgctgtg Alignment from Exonerate_protein2genome GCAGAATATGAAATTACTCCAGATGAAAACCTTGGGGCGAAGGGGAAGGAAATAATGACCAAGTACCTCACTCCAAAG tgtgcatattccaacatcagtagtaaaaatgaaactttgcttttcaacagGCAGACTATGAAATTACTCCAGATGAAAATCTTGGAGCAAAAGGGAAGGAAACAATGACCAAGTACCTCACTCCAAGAgtgagttatccaaaactacttaatgcagtgtgttggcagcctatgctgtg Alignment from Exonerate_coding2genome GCAGAATATGAAATTACTCCAGATGAAAACCTTGGGGCGAAGGGGAAGGAAATAATGACCAAGTACCTCACTCCAAAG tgtgcatattccaacatcagtagtaaaaatgaaactttgcttttcaacagGCAGACTATGAAATTACTCCAGATGAAAATCTTGGAGCAAAAGGGAAGGAAACAATGACCAAGTACCTCACTCCAAGAgtgagttatccaaaactacttaatgcagtgtgttggcagcctatgctgtg Alignment from GeneWise GCAGAATATGAAATTACTCCAGATGAAAACCTTGGGGCGAAGGGGAAGGAAATAATGACCAAGTACCTCACTCCAAAG tgtgcatattccaacatcagtagtaaaaatgaaactttgcttttcaacagGCAGACTATGAAATTACTCCAGATGAAAATCTTGGAGCAAAAGGGAAGGAAACAATGACCAAGTACCTCACTCCAAGAgtgagttatccaaaactacttaatgcagtgtgttggcagcctatgctgtg #### Grk5_ID13421_14 --> 0 - 0 Original Alignment CCCCGGGCTGTATACTGCAAGGATGTGCTGGACATTGAGCAGTTCTCCACTGTGAAAGGTGTCAACCTGGACCATACGGACGATGATTTTTACTCAAAGTTCTCTACAGGCTCTGTGCCAATTCCATGGCAAAAT---------------GAG atattccgggaacaggaaggttggtggtgatggtgtttttttctttgaagCCCTGGGCTGTATATTGCACAGATGTGCTGGACATAGGACAGTTCTCCACTGTGAAAGATGTCCAG---GACCACACTGAAGAC---TTCTACTCAAAATACTCTACAGGTTCTGTACCTAGTCCATGGCATAATGAGGTATTCGAGGTAGAGgtaaataaggtaaaccaggtcacaatcagcactatcccctgatatcctag Alignment from CESAR CCCCGGGCTGTATACTGCAAGGATGTGCTGGACATTGAGCAGTTCTCCACTGTGAAAGGTGTCAACCTGGACCATACGGACGATGATTTTTACTCAAAGTTCTCTACAGGCTCTGTGCCAATTCCATGGCAAAATGAG atattccgggaacaggaaggttggtggtgatggtgtttttttctttgaagCCCTGGGCTGTATATTGCACAGATGTGCTGGACATAGGACAGTTCTCCACTGTGAAAGATGTC---CAGGACCACACT---GAAGACTTCTACTCAAAATACTCTACAGGTTCTGTACCTAGTCCATGGCATAATGAGgtattcgaggtagaggtaaataaggtaaaccaggtcacaatcagcactatcccctgatatcctag Alignment from Spaln_aa2Genome CCCCGGGCTGTATACTGCAAGGATGTGCTGGACATTGAGCAGTTCTCCACTGTGAAAGGTGTCAACCTGGACCATACGGACGATGATTTTTACTCAAAGTTCTCTACAGGCTCTGTGCCAATTCCATGGCAAAATGAG atattccgggaacaggaaggttggtggtgatggtgtttttttctttgaagCCCTGGGCTGTATATTGCACAGATGTGCTGGACATAGGACAGTTCTCCACTGTGAAAGATGTCCAG---GACCACACT---GAAGACTTCTACTCAAAATACTCTACAGGTTCTGTACCTAGTCCATGGCATAATGAGgtattcgaggtagaggtaaataaggtaaaccaggtcacaatcagcactatcccctgatatcctag Alignment from Spaln_nt2Genome CCCCGGGCTGTATACTGCAAGGATGTGCTGGACATTGAGCAGTTCTCCACTGTGAAAGGTGTCAACCTGGACCATACGGACGATGATTTTTACTCAAAGTTCTCTACAGGCTCTGTGCCAATTCCATGGCAAAATGAG atattccgggaacaggaaggttggtggtgatggtgtttttttctttgaagCCCTGGGCTGTATATTGCACAGATGTGCTGGACATAGGACAGTTCTCCACTGTGAAAGATGT---CCAGGACCACAC---TGAAGACTTCTACTCAAAATACTCTACAGGTTCTGTACCTAGTCCATGGCATAATGAGgtattcgaggtagaggtaaataaggtaaaccaggtcacaatcagcactatcccctgatatcctag Alignment from Pairagon CCCCGGGCTGTATACTGCAAGGATGTGCTGGACATTGAGCAGTTCTCCACTGTGAAAGGTGTCAACCTGGACCATACGGACGATGATTTTTACTCAAAGTTCTCTACAGGCTCTGTGCCAATTCCATGGCAAAATGAG atattccgggaacaggaaggttggtggtgatggtgtttttttctttgaagCCCTGGGCTGTATATTGCACAGATGTGCTGGACATAGGACAGTTCTCCACTGTGAAAGATGTCCA---GGACCACAC---TGAAGACTTCTACTCAAAATACTCTACAGGTTCTGTACCTAGTCCATGGCATAATGAGgtattcgaggtagaggtaaataaggtaaaccaggtcacaatcagcactatcccctgatatcctag Alignment from Exonerate_protein2genome CCCCGGGCTGTATACTGCAAGGATGTGCTGGACATTGAGCAGTTCTCCACTGTGAAAGGTGTCAACCTGGACCATACGGACGATGATTTTTACTCAAAGTTCTCTACAGGCTCTGTGCCAATTCCATGGCAAAATGAG atattccgggaacaggaaggttggtggtgatggtgtttttttctttgaagCCCTGGGCTGTATATTGCACAGATGTGCTGGACATAGGACAGTTCTCCACTGTGAAAGATGTCCAG---GACCACACT---GAAGACTTCTACTCAAAATACTCTACAGGTTCTGTACCTAGTCCATGGCATAATGAGgtattcgaggtagaggtaaataaggtaaaccaggtcacaatcagcactatcccctgatatcctag Alignment from Exonerate_coding2genome CCCCGGGCTGTATACTGCAAGGATGTGCTGGACATTGAGCAGTTCTCCACTGTGAAAGGTGTCAACCTGGACCATACGGACGATGATTTTTACTCAAAGTTCTCTACAGGCTCTGTGCCAATTCCATGGCAAAATGAG atattccgggaacaggaaggttggtggtgatggtgtttttttctttgaagCCCTGGGCTGTATATTGCACAGATGTGCTGGACATAGGACAGTTCTCCACTGTGAAAGATGTCCAG---GACCACACT---GAAGACTTCTACTCAAAATACTCTACAGGTTCTGTACCTAGTCCATGGCATAATGAGgtattcgaggtagaggtaaataaggtaaaccaggtcacaatcagcactatcccctgatatcctag Alignment from GeneWise CCCCGGGCTGTATACTGCAAGGATGTGCTGGACATTGAGCAGTTCTCCACTGTGAAAGGTGTCAACCTGGACCATACGGACGATGATTTTTACTCAAAGTTCTCTACAGGCTCTGTGCCAATTCCATGGCAAAATGAG atattccgggaacaggaaggttggtggtgatggtgtttttttctttgaagCCCTGGGCTGTATATTGCACAGATGTGCTGGACATAGGACAGTTCTCCACTGTGAAAGATGTCCAG---GACCACACTGAAGAC---TTCTACTCAAAATACTCTACAGGTTCTGTACCTAGTCCATGGCATAATGAGgtattcgaggtagaggtaaataaggtaaaccaggtcacaatcagcactatcccctgatatcctag #### Gucy2g_ID11575_16 --> 1 - 2 Original Alignment cCACGTGAGCATCCTGGATAGCATGATGGGGAAGCTGGAAACGTACGCCAATCACCTGGAGGAAGTGGTAGAGGAGCGGACCCGCGAGTTGGTGGCAGAGAAAAGAAAGGTGGAGAAACTCCTGTCTACCATGTTGCCAag gctggatttctccaatggtatagaagtactgtgccccccttgtcacccagcCATGTTAGCATTCTTGATACCATGATGGGGAAACTCGAAATCTATACTAATCATCAGGAGGAAGTA---------CGGATGAGTGACTTGGTAGCGGAGAAGCGAAAAGTAGAGAAACTCCTGTCTATCATGTTGGCCaggtaggtgatattctgttatacactactcaccatgagaaactcaaaatgta Alignment from CESAR cCACGTGAGCATCCTGGATAGCATGATGGGGAAGCTGGAAACGTACGCCAATCACCTGGAGGAAGTGGTAGAGGAGCGGACCCGCGAGTTGGTGGCAGAGAAAAGAAAGGTGGAGAAACTCCTGTCTACCATGTTGCCAag gctggatttctccaatggtatagaagtactgtgccccccttgtcacccagcCATGTTAGCATTCTTGATACCATGATGGGGAAACTCGAAATCTATACTAATCATCAGGAGGAAGTA---------CGGATGAGTGACTTGGTAGCGGAGAAGCGAAAAGTAGAGAAACTCCTGTCTATCATGTTGGCCaggtaggtgatattctgttatacactactcaccatgagaaactcaaaatgta Alignment from Spaln_aa2Genome CCACGTGAGCATCCTGGATAGCATGATGGGGAAGCTGGAAACGTACGCCAATCACCTGGAGGAAGTGGTAGAGGAGCGGACCCGCGAGTTGGTGGCAGAGAAAAGAAAGGTGGAGAAACTCCTGTCTACCATGTTGCCAAG gctggatttctccaatggtatagaagtactgtgccccccttgtcacccagCCATGTTAGCATTCTTGATACCATGATGGGGAAACTCGAAATCTATACTAATCATCAGGAGGAAGTA---------CGGATGAGTGACTTGGTAGCGGAGAAGCGAAAAGTAGAGAAACTCCTGTCTATCATGTTGGCCAGgtaggtgatattctgttatacactactcaccatgagaaactcaaaatgta Alignment from Spaln_nt2Genome CCACGTGAGCATCCTGGATAGCATGATGGGGAAGCTGGAAACGTACGCCAATCACCTGGAGGAAGTGGTAGAGGAGCGGACCCGCGAGTTGGTGGCAGAGAAAAGAAAGGTGGAGAAACTCCTGTCTACCATGTTGCCAAG gctggatttctccaatggtatagaagtactgtgccccccttgtcacccagCCATGTTAGCATTCTTGATACCATGATGGGGAAACTCGAAATCTATACTAATCATCAGGAGGAAGT---------ACGGATGAGTGACTTGGTAGCGGAGAAGCGAAAAGTAGAGAAACTCCTGTCTATCATGTTGGCCAGgtaggtgatattctgttatacactactcaccatgagaaactcaaaatgta Alignment from Pairagon CCACGTGAGCATCCTGGATAGCATGATGGGGAAGCTGGAAACGTACGCCAATCACCTGGAGGAAGTGGTAGAGGAGCGGACCCGCGAGTTGGTGGCAGAGAAAAGAAAGGTGGAGAAACTCCTGTCTACCATGTTGCCAAG gctggatttctccaatggtatagaagtactgtgccccccttgtcacccagCCATGTTAGCATTCTTGATACCATGATGGGGAAACTCGAAATCTATACTAATCATCAGGAGGAAGT---------ACGGATGAGTGACTTGGTAGCGGAGAAGCGAAAAGTAGAGAAACTCCTGTCTATCATGTTGGCCAGgtaggtgatattctgttatacactactcaccatgagaaactcaaaatgta Alignment from Exonerate_protein2genome CCACGTGAGCATCCTGGATAGCATGATGGGGAAGCTGGAAACGTACGCCAATCACCTGGAGGAAGTGGTAGAGGAGCGGACCCGCGAGTTGGTGGCAGAGAAAAGAAAGGTGGAGAAACTCCTGTCTACCATGTTGCCAAG gctggatttctccaatggtatagaagtactgtgccccccttgtcacccagCCATGTTAGCATTCTTGATACCATGATGGGGAAACTCGAAATCTATACTAATCATCAGGAGGAAGTA---------CGGATGAGTGACTTGGTAGCGGAGAAGCGAAAAGTAGAGAAACTCCTGTCTATCATGTTGGCCAGgtaggtgatattctgttatacactactcaccatgagaaactcaaaatgta Alignment from Exonerate_coding2genome CCACGTGAGCATCCTGGATAGCATGATGGGGAAGCTGGAAACGTACGCCAATCACCTGGAGGAAGTGGTAGAGGAGCGGACCCGCGAGTTGGTGGCAGAGAAAAGAAAGGTGGAGAAACTCCTGTCTACCATGTTGCCAAG gctggatttctccaatggtatagaagtactgtgccccccttgtcacccagCCATGTTAGCATTCTTGATACCATGATGGGGAAACTCGAAATCTATACTAATCATCAGGAGGAAGTA---------CGGATGAGTGACTTGGTAGCGGAGAAGCGAAAAGTAGAGAAACTCCTGTCTATCATGTTGGCCAGgtaggtgatattctgttatacactactcaccatgagaaactcaaaatgta Alignment from GeneWise CCACGTGAGCATCCTGGATAGCATGATGGGGAAGCTGGAAACGTACGCCAATCACCTGGAGGAAGTGGTAGAGGAGCGGACCCGCGAGTTGGTGGCAGAGAAAAGAAAGGTGGAGAAACTCCTGTCTACCATGTTGCCAAG gctggatttctccaatggtatagaagtactgtgccccccttgtcacccagCCATGTTAGCATTCTTGATACCATGATGGGGAAACTCGAAATCTATACTAATCATCAGGAGGAAGTA---------CGGATGAGTGACTTGGTAGCGGAGAAGCGAAAAGTAGAGAAACTCCTGTCTATCATGTTGGCCAGgtaggtgatattctgttatacactactcaccatgagaaactcaaaatgta #### Gucy2g_ID11576_15 --> 2 - 2 Original Alignment aaATCATCAGCCGCATCAAAGACCCCCGGGCACCCGTTCCGCTTCGGCCGTCCCTGTTGGAGGATAAAGGTGATGGAAGGATTGTGGCCCTAGTGAGGGAGTGCTGGGATGAATCTCCAGAGCTAAGGCCCATCTTCCCTTCCATCAAGAAGACGTTACGAGAAGCCAGTCCCAGAgg agtgaagtaggcaagacagggtgcacatctttgcccttcccaccttgcagatATAATCAGTCACGTCAAGGAC---CAACCTCCAGTACCACTTCCACTATCATTACTGGAAGATGAAGGCGATGGAAGGAATGTAGCCCTGGTTAAGGAATGCTGGGATGAATCACCTGAACTCAGAACAATCTTGCCTTCCACTGAGAAAACATTATGTGAGGCCAGTACGAGAgggtatcctaggatgtcagtgatcattatttataggatgatccttaaagaca Alignment from CESAR aaATCATCAGCCGCATCAAAGACCCCCGGGCACCCGTTCCGCTTCGGCCGTCCCTGTTGGAGGATAAAGGTGATGGAAGGATTGTGGCCCTAGTGAGGGAGTGCTGGGATGAATCTCCAGAGCTAAGGCCCATCTTCCCTTCCATCAAGAAGACGTTACGAGAAGCCAGTCCCAGAgg agtgaagtaggcaagacagggtgcacatctttgcccttcccaccttgcagatATAATCAGTCACGTCAAGGAC---CAACCTCCAGTACCACTTCCACTATCATTACTGGAAGATGAAGGCGATGGAAGGAATGTAGCCCTGGTTAAGGAATGCTGGGATGAATCACCTGAACTCAGAACAATCTTGCCTTCCACTGAGAAAACATTATGTGAGGCCAGTACGAGAgggtatcctaggatgtcagtgatcattatttataggatgatccttaaagaca Alignment from Spaln_aa2Genome AAATCATCAGCCGCATCAAAGACCCCCGGGCACCCGTTCCGCTTCGGCCGTCCCTGTTGGAGGATAAAGGTGATGGAAGGATTGTGGCCCTAGTGAGGGAGTGCTGGGATGAATCTCCAGAGCTAAGGCCCATCTTCCCTTCCATCAAGAAGACGTTACGAGAAGCCAGTCCCAGAGG agtgaagtaggcaagacagggtgcacatctttgcccttcccaccttgcagATATAATCAGTCACGTCAAGGAC---CAACCTCCAGTACCACTTCCACTATCATTACTGGAAGATGAAGGCGATGGAAGGAATGTAGCCCTGGTTAAGGAATGCTGGGATGAATCACCTGAACTCAGAACAATCTTGCCTTCCACTGAGAAAACATTATGTGAGGCCAGTACGAGAGGgtatcctaggatgtcagtgatcattatttataggatgatccttaaagaca Alignment from Spaln_nt2Genome --ATCATCAGCCGCATCAAAGACCCCCGGGCACCCGTTCCGCTTCGGCCGTCCCTGTTGGAGGATAAAGGTGATGGAAGGATTGTGGCCCTAGTGAGGGAGTGCTGGGATGAATCTCCAGAGCTAAGGCCCATCTTCCCTTCCATCAAGAAGACGTTACGAGAAGCCAGTCCCAGAGG agtgaagtaggcaagacagggtgcacatctttgcccttcccaccttgcagATATAATCAGTCACGTCAAGGACCAAC---CTCCAGTACCACTTCCACTATCATTACTGGAAGATGAAGGCGATGGAAGGAATGTAGCCCTGGTTAAGGAATGCTGGGATGAATCACCTGAACTCAGAACAATCTTGCCTTCCACTGAGAAAACATTATGTGAGGCCAGTACGAGAGGgtatcctaggatgtcagtgatcattatttataggatgatccttaaagaca Alignment from Pairagon AAATCATCAGCCGCATCAAAGACC-----------------------------CCCGGGCACCCGTTCCGCTTCGGCCGTCCCTGTTGGAGGATAAAGGTGATGGAAGGATTGTGGCCCTAGTGAGGGAGTGCTGGGATGAATCTCCAGAGCTAAGGCCCATCTTCCCTTCCATCAAGAAGACGTTACGAGAAGCCAGTCCCAGAGG agtgaagtaggcaagacagggtgcacatctttgcccttcccaccttgcagATATAATCAGTCACGTCAAGGACCAACCTCCAGTACCACTTCCACTATCATTAC--------------------------------TGGAAGATGAAGGCGATGGAAGGAATGTAGCCCTGGTTAAGGAATGCTGGGATGAATCACCTGAACTCAGAACAATCTTGCCTTCCACTGAGAAAACATTATGTGAGGCCAGTACGAGAGGgtatcctaggatgtcagtgatcattatttataggatgatccttaaagaca Alignment from Exonerate_protein2genome AAATCATCAGCCGCATCAAAGACCCCCGGGCACCCGTTCCGCTTCGGCCGTCCCTGTTGGAGGATAAAGGTGATGGAAGGATTGTGGCCCTAGTGAGGGAGTGCTGGGATGAATCTCCAGAGCTAAGGCCCATCTTCCCTTCCATCAAGAAGACGTTACGAGAAGCCAGTCCCAGAGG agtgaagtaggcaagacagggtgcacatctttgcccttcccaccttgcagATATAATCAGTCACGTCAAGGAC---CAACCTCCAGTACCACTTCCACTATCATTACTGGAAGATGAAGGCGATGGAAGGAATGTAGCCCTGGTTAAGGAATGCTGGGATGAATCACCTGAACTCAGAACAATCTTGCCTTCCACTGAGAAAACATTATGTGAGGCCAGTACGAGAGGgtatcctaggatgtcagtgatcattatttataggatgatccttaaagaca Alignment from Exonerate_coding2genome AAATCATCAGCCGCATCAAAGACCCCCGGGCACCCGTTCCGCTTCGGCCGTCCCTGTTGGAGGATAAAGGTGATGGAAGGATTGTGGCCCTAGTGAGGGAGTGCTGGGATGAATCTCCAGAGCTAAGGCCCATCTTCCCTTCCATCAAGAAGACGTTACGAGAAGCCAGTCCCAGAGG agtgaagtaggcaagacagggtgcacatctttgcccttcccaccttgcagATATAATCAGTCACGTCAAGGAC---CAACCTCCAGTACCACTTCCACTATCATTACTGGAAGATGAAGGCGATGGAAGGAATGTAGCCCTGGTTAAGGAATGCTGGGATGAATCACCTGAACTCAGAACAATCTTGCCTTCCACTGAGAAAACATTATGTGAGGCCAGTACGAGAGGgtatcctaggatgtcagtgatcattatttataggatgatccttaaagaca Alignment from GeneWise --ATCATCAGCCGCATCAAAGACCCCCGGGCACCCGTTCCGCTTCGGCCGTCCCTGTTGGAGGATAAAGGTGATGGAAGGATTGTGGCCCTAGTGAGGGAGTGCTGGGATGAATCTCCAGAGCTAAGGCCCATCTTCCCTTCCATCAAGAAGACGTTACGAGAAGCCAGTCCCAGAGG agtgaagtaggcaagacagggtgcacatctttgcccttcccaccttgcagATATAATCAGTCACGTCAAGGAC---CAACCTCCAGTACCACTTCCACTATCATTACTGGAAGATGAAGGCGATGGAAGGAATGTAGCCCTGGTTAAGGAATGCTGGGATGAATCACCTGAACTCAGAACAATCTTGCCTTCCACTGAGAAAACATTATGTGAGGCCAGTACGAGAGGgtatcctaggatgtcagtgatcattatttataggatgatccttaaagaca #### Gucy2g_ID11580_11 --> 0 - 0 Original Alignment ATGTGCGAACTAAAGCATGAAAACATCGTCCCCTTCTTTGGTGTTTGCACAGAGCCACCTAACATCTGCATCGTTACACAGTACTGCAAAAAAGGAAGTCTCCAG ggattatcactgcatagaatagaataataattctgtctctctctcctcagATGTGCGAATTGAAGCATGAAAACATAGTCCCTTTCTTTGGTGTCTGCACGGAACCTCCAAACATATGCATTATTACACAATACTGCAAGAAGGGAAGTCTCAAGgtgggtagatatcctgagcctaataagttggcatttgtcaagactggcct Alignment from CESAR ATGTGCGAACTAAAGCATGAAAACATCGTCCCCTTCTTTGGTGTTTGCACAGAGCCACCTAACATCTGCATCGTTACACAGTACTGCAAAAAAGGAAGTCTCCAG ggattatcactgcatagaatagaataataattctgtctctctctcctcagATGTGCGAATTGAAGCATGAAAACATAGTCCCTTTCTTTGGTGTCTGCACGGAACCTCCAAACATATGCATTATTACACAATACTGCAAGAAGGGAAGTCTCAAGgtgggtagatatcctgagcctaataagttggcatttgtcaagactggcct Alignment from Spaln_aa2Genome ATGTGCGAACTAAAGCATGAAAACATCGTCCCCTTCTTTGGTGTTTGCACAGAGCCACCTAACATCTGCATCGTTACACAGTACTGCAAAAAAGGAAGTCTCCAG ggattatcactgcatagaatagaataataattctgtctctctctcctcagATGTGCGAATTGAAGCATGAAAACATAGTCCCTTTCTTTGGTGTCTGCACGGAACCTCCAAACATATGCATTATTACACAATACTGCAAGAAGGGAAGTCTCAAGgtgggtagatatcctgagcctaataagttggcatttgtcaagactggcct Alignment from Spaln_nt2Genome ATGTGCGAACTAAAGCATGAAAACATCGTCCCCTTCTTTGGTGTTTGCACAGAGCCACCTAACATCTGCATCGTTACACAGTACTGCAAAAAAGGAAGTCTCCAG ggattatcactgcatagaatagaataataattctgtctctctctcctcagATGTGCGAATTGAAGCATGAAAACATAGTCCCTTTCTTTGGTGTCTGCACGGAACCTCCAAACATATGCATTATTACACAATACTGCAAGAAGGGAAGTCTCAAGgtgggtagatatcctgagcctaataagttggcatttgtcaagactggcct Alignment from Pairagon ATGTGCGAACTAAAGCATGAAAACATCGTCCCCTTCTTTGGTGTTTGCACAGAGCCACCTAACATCTGCATCGTTACACAGTACTGCAAAAAAGGAAGTCTCCAG ggattatcactgcatagaatagaataataattctgtctctctctcctcagATGTGCGAATTGAAGCATGAAAACATAGTCCCTTTCTTTGGTGTCTGCACGGAACCTCCAAACATATGCATTATTACACAATACTGCAAGAAGGGAAGTCTCAAGgtgggtagatatcctgagcctaataagttggcatttgtcaagactggcct Alignment from Exonerate_protein2genome ATGTGCGAACTAAAGCATGAAAACATCGTCCCCTTCTTTGGTGTTTGCACAGAGCCACCTAACATCTGCATCGTTACACAGTACTGCAAAAAAGGAAGTCTCCAG ggattatcactgcatagaatagaataataattctgtctctctctcctcagATGTGCGAATTGAAGCATGAAAACATAGTCCCTTTCTTTGGTGTCTGCACGGAACCTCCAAACATATGCATTATTACACAATACTGCAAGAAGGGAAGTCTCAAGgtgggtagatatcctgagcctaataagttggcatttgtcaagactggcct Alignment from Exonerate_coding2genome ATGTGCGAACTAAAGCATGAAAACATCGTCCCCTTCTTTGGTGTTTGCACAGAGCCACCTAACATCTGCATCGTTACACAGTACTGCAAAAAAGGAAGTCTCCAG ggattatcactgcatagaatagaataataattctgtctctctctcctcagATGTGCGAATTGAAGCATGAAAACATAGTCCCTTTCTTTGGTGTCTGCACGGAACCTCCAAACATATGCATTATTACACAATACTGCAAGAAGGGAAGTCTCAAGgtgggtagatatcctgagcctaataagttggcatttgtcaagactggcct Alignment from GeneWise ATGTGCGAACTAAAGCATGAAAACATCGTCCCCTTCTTTGGTGTTTGCACAGAGCCACCTAACATCTGCATCGTTACACAGTACTGCAAAAAAGGAAGTCTCCAG ggattatcactgcatagaatagaataataattctgtctctctctcctcagATGTGCGAATTGAAGCATGAAAACATAGTCCCTTTCTTTGGTGTCTGCACGGAACCTCCAAACATATGCATTATTACACAATACTGCAAGAAGGGAAGTCTCAAGgtgggtagatatcctgagcctaataagttggcatttgtcaagactggcct #### Gucy2g_ID11584_7 --> 1 - 1 Original Alignment aCCCTGGAGGAATGACTCGAACACCTCATGGCCCCATGGCTCCCTTCCTGAGTATAAACCTGGCTGTGGATTTCATAACGACCTTTGCAAAACGAAGCCACCCACTGTAGCAg aacagacagaataagagtgtcctaatacagttgctctcccacatccccaggCCCTGGAGAAATGAATCAAACACCTCATGGCCCCATGGCTCATTACCTGATTACAAGCCTGGCTGTGGATTCTATAATGGACTATGTATAACAAAGACACCCACGGTAACAggtatgtctacccaaacacactgtaaaatgcaaaatatttttcaagttctg Alignment from CESAR aCCCTGGAGGAATGACTCGAACACCTCATGGCCCCATGGCTCCCTTCCTGAGTATAAACCTGGCTGTGGATTTCATAACGACCTTTGCAAAACGAAGCCACCCACTGTAGCAg aacagacagaataagagtgtcctaatacagttgctctcccacatccccaggCCCTGGAGAAATGAATCAAACACCTCATGGCCCCATGGCTCATTACCTGATTACAAGCCTGGCTGTGGATTCTATAATGGACTATGTATAACAAAGACACCCACGGTAACAggtatgtctacccaaacacactgtaaaatgcaaaatatttttcaagttctg Alignment from Spaln_aa2Genome ACCCTGGAGGAATGACTCGAACACCTCATGGCCCCATGGCTCCCTTCCTGAGTATAAACCTGGCTGTGGATTTCATAACGACCTTTGCAAAACGAAGCCACCCACTGTAGCAG aacagacagaataagagtgtcctaatacagttgctctcccacatccccagGCCCTGGAGAAATGAATCAAACACCTCATGGCCCCATGGCTCATTACCTGATTACAAGCCTGGCTGTGGATTCTATAATGGACTATGTATAACAAAGACACCCACGGTAACAGgtatgtctacccaaacacactgtaaaatgcaaaatatttttcaagttctg Alignment from Spaln_nt2Genome ACCCTGGAGGAATGACTCGAACACCTCATGGCCCCATGGCTCCCTTCCTGAGTATAAACCTGGCTGTGGATTTCATAACGACCTTTGCAAAACGAAGCCACCCACTGTAGCAG aacagacagaataagagtgtcctaatacagttgctctcccacatccccagGCCCTGGAGAAATGAATCAAACACCTCATGGCCCCATGGCTCATTACCTGATTACAAGCCTGGCTGTGGATTCTATAATGGACTATGTATAACAAAGACACCCACGGTAACAGgtatgtctacccaaacacactgtaaaatgcaaaatatttttcaagttctg Alignment from Pairagon ACCCTGGAGGAATGACTCGAACACCTCATGGCCCCATGGCTCCCTTCCTGAGTATAAACCTGGCTGTGGATTTCATAACGACCTTTGCAAAACGAAGCCACCCACTGTAGCAG aacagacagaataagagtgtcctaatacagttgctctcccacatccccagGCCCTGGAGAAATGAATCAAACACCTCATGGCCCCATGGCTCATTACCTGATTACAAGCCTGGCTGTGGATTCTATAATGGACTATGTATAACAAAGACACCCACGGTAACAGgtatgtctacccaaacacactgtaaaatgcaaaatatttttcaagttctg Alignment from Exonerate_protein2genome ACCCTGGAGGAATGACTCGAACACCTCATGGCCCCATGGCTCCCTTCCTGAGTATAAACCTGGCTGTGGATTTCATAACGACCTTTGCAAAACGAAGCCACCCACTGTAGCAG aacagacagaataagagtgtcctaatacagttgctctcccacatccccagGCCCTGGAGAAATGAATCAAACACCTCATGGCCCCATGGCTCATTACCTGATTACAAGCCTGGCTGTGGATTCTATAATGGACTATGTATAACAAAGACACCCACGGTAACAGgtatgtctacccaaacacactgtaaaatgcaaaatatttttcaagttctg Alignment from Exonerate_coding2genome ACCCTGGAGGAATGACTCGAACACCTCATGGCCCCATGGCTCCCTTCCTGAGTATAAACCTGGCTGTGGATTTCATAACGACCTTTGCAAAACGAAGCCACCCACTGTAGCAG aacagacagaataagagtgtcctaatacagttgctctcccacatccccagGCCCTGGAGAAATGAATCAAACACCTCATGGCCCCATGGCTCATTACCTGATTACAAGCCTGGCTGTGGATTCTATAATGGACTATGTATAACAAAGACACCCACGGTAACAGgtatgtctacccaaacacactgtaaaatgcaaaatatttttcaagttctg Alignment from GeneWise ACCCTGGAGGAATGACTCGAACACCTCATGGCCCCATGGCTCCCTTCCTGAGTATAAACCTGGCTGTGGATTTCATAACGACCTTTGCAAAACGAAGCCACCCACTGTAGCAG aacagacagaataagagtgtcctaatacagttgctctcccacatccccagGCCCTGGAGAAATGAATCAAACACCTCATGGCCCCATGGCTCATTACCTGATTACAAGCCTGGCTGTGGATTCTATAATGGACTATGTATAACAAAGACACCCACGGTAACAGgtatgtctacccaaacacactgtaaaatgcaaaatatttttcaagttctg #### Gucy2g_ID11588_3 --> 2 - 0 Original Alignment tcATCATCCTAATCTGCAGCTCGGAGGATGCAAGGCGCATTCTGCAGGCTGCAGTGGACCTGGGACTCGACACTGGAGAATTCGTTTTCATCCTCTTGCAGCAGCTGGAG gagatgcataacaccatgtgagagtgttttgtgtgtatttatcgctacagttATCATCTTAATCTGCAGTTCAGAAGACGCCAGGCACATTCTTCAGGCAGCAGTAGATCTAGGGCTTGACACTGGAGATTTTGTTTTTATTCTCTTGCAGCAACTGGAAgtgagtctagtaaacacctgtattaacacggtgctaggaaggcaaggtgg Alignment from CESAR tcATCATCCTAATCTGCAGCTCGGAGGATGCAAGGCGCATTCTGCAGGCTGCAGTGGACCTGGGACTCGACACTGGAGAATTCGTTTTCATCCTCTTGCAGCAGCTGGAG gagatgcataacaccatgtgagagtgttttgtgtgtatttatcgctacagttATCATCTTAATCTGCAGTTCAGAAGACGCCAGGCACATTCTTCAGGCAGCAGTAGATCTAGGGCTTGACACTGGAGATTTTGTTTTTATTCTCTTGCAGCAACTGGAAgtgagtctagtaaacacctgtattaacacggtgctaggaaggcaaggtgg Alignment from Spaln_aa2Genome TCATCATCCTAATCTGCAGCTCGGAGGATGCAAGGCGCATTCTGCAGGCTGCAGTGGACCTGGGACTCGACACTGGAGAATTCGTTTTCATCCTCTTGCAGCAGCTGGAG gagatgcataacaccatgtgagagtgttttgtgtgtatttatcgctacagTTATCATCTTAATCTGCAGTTCAGAAGACGCCAGGCACATTCTTCAGGCAGCAGTAGATCTAGGGCTTGACACTGGAGATTTTGTTTTTATTCTCTTGCAGCAACTGGAAgtgagtctagtaaacacctgtattaacacggtgctaggaaggcaaggtgg Alignment from Spaln_nt2Genome TCATCATCCTAATCTGCAGCTCGGAGGATGCAAGGCGCATTCTGCAGGCTGCAGTGGACCTGGGACTCGACACTGGAGAATTCGTTTTCATCCTCTTGCAGCAGCTGGAG gagatgcataacaccatgtgagagtgttttgtgtgtatttatcgctacagTTATCATCTTAATCTGCAGTTCAGAAGACGCCAGGCACATTCTTCAGGCAGCAGTAGATCTAGGGCTTGACACTGGAGATTTTGTTTTTATTCTCTTGCAGCAACTGGAAgtgagtctagtaaacacctgtattaacacggtgctaggaaggcaaggtgg Alignment from Pairagon TCATCATCCTAATCTGCAGCTCGGAGGATGCAAGGCGCATTCTGCAGGCTGCAGTGGACCTGGGACTCGACACTGGAGAATTCGTTTTCATCCTCTTGCAGCAGCTGGAG gagatgcataacaccatgtgagagtgttttgtgtgtatttatcgctacagTTATCATCTTAATCTGCAGTTCAGAAGACGCCAGGCACATTCTTCAGGCAGCAGTAGATCTAGGGCTTGACACTGGAGATTTTGTTTTTATTCTCTTGCAGCAACTGGAAgtgagtctagtaaacacctgtattaacacggtgctaggaaggcaaggtgg Alignment from Exonerate_protein2genome TCATCATCCTAATCTGCAGCTCGGAGGATGCAAGGCGCATTCTGCAGGCTGCAGTGGACCTGGGACTCGACACTGGAGAATTCGTTTTCATCCTCTTGCAGCAGCTGGAG gagatgcataacaccatgtgagagtgttttgtgtgtatttatcgctacagTTATCATCTTAATCTGCAGTTCAGAAGACGCCAGGCACATTCTTCAGGCAGCAGTAGATCTAGGGCTTGACACTGGAGATTTTGTTTTTATTCTCTTGCAGCAACTGGAAgtgagtctagtaaacacctgtattaacacggtgctaggaaggcaaggtgg Alignment from Exonerate_coding2genome gagatgcataacaccatgtgagagtgttttgtgtgtatttatcgctacagttatcatcttaatctgcagttcagaagacgccaggcacattcttcaggcagcagtagatctagggcttgacactggagattttgtttttattctcttgcagcaactggaagtgagtctagtaaacacctgtattaacacggtgctaggaaggcaaggtgg Alignment from GeneWise TCATCATCCTAATCTGCAGCTCGGAGGATGCAAGGCGCATTCTGCAGGCTGCAGTGGACCTGGGACTCGACACTGGAGAATTCGTTTTCATCCTCTTGCAGCAGCTGGAG gagatgcataacaccatgtgagagtgttttgtgtgtatttatcgctacagTTATCATCTTAATCTGCAGTTCAGAAGACGCCAGGCACATTCTTCAGGCAGCAGTAGATCTAGGGCTTGACACTGGAGATTTTGTTTTTATTCTCTTGCAGCAACTGGAAgtgagtctagtaaacacctgtattaacacggtgctaggaaggcaaggtgg #### Habp2_ID12054_2 --> 0 - 1 Original Alignment CTCTCACTGATGTCCTTCATTGCGCCCCCAGACCCAg agtgttggacattggccctaaggagtctttgttttttcatccttctgaagCTTGCCCTAATGTCCTTTACTGTACCCCCAGACCCTggtgagtgtgtaattgtagttttgccatatttctagaaacatatgtttatt Alignment from CESAR CTCTCACTGATGTCCTTCATTGCGCCCCCAGACCCAg agtgttggacattggccctaaggagtctttgttttttcatccttctgaagCTTGCCCTAATGTCCTTTACTGTACCCCCAGACCCTggtgagtgtgtaattgtagttttgccatatttctagaaacatatgtttatt Alignment from Spaln_aa2Genome CTCTCACTGATGTCCTTCATTGCGCCCCCAGACCCAG agtgttggacattggccctaaggagtctttgttttttcatccttctgaagCTTGCCCTAATGTCCTTTACTGTACCCCCAGACCCTGgtgagtgtgtaattgtagttttgccatatttctagaaacatatgtttatt Alignment from Spaln_nt2Genome CTCTCACTGATGTCCTTCATTGCGCCCCCAGACCCAG agtgttggacattggccctaaggagtctttgttttttcatccttctgaagCTTGCCCTAATGTCCTTTACTGTACCCCCAGACCCTGgtgagtgtgtaattgtagttttgccatatttctagaaacatatgtttatt Alignment from Pairagon CTCTCACTGATGTCCTTCATTGCGCCCCCAGACCCAG agtgttggacattggccctaaggagtctttgttttttcatccttctgaagCTTGCCCTAATGTCCTTTACTGTACCCCCAGACCCTGgtgagtgtgtaattgtagttttgccatatttctagaaacatatgtttatt Alignment from Exonerate_protein2genome agtgttggacattggccctaaggagtctttgttttttcatccttctgaagcttgccctaatgtcctttactgtacccccagaccctggtgagtgtgtaattgtagttttgccatatttctagaaacatatgtttatt Alignment from Exonerate_coding2genome GTCCTGCTGCTAATCGCCCTGGTGGGGAAGTCAGTCATTGGGCTCTCACTGATGTCCTTCATTGCGCCCCCAGACCCAG agtgttggACATTGGCCCTAAGGAGTCTTTGTTTTTTCATCCTTCTGAAGCTTGCCCTAATGTCCTTTACTGTACCCCCAGACCCTGgtgagtgtgtaattgtagttttgccatatttctagaaacatatgtttatt Alignment from GeneWise agtgttggacattggccctaaggagtctttgttttttcatccttctgaagcttgccctaatgtcctttactgtacccccagaccctggtgagtgtgtaattgtagttttgccatatttctagaaacatatgtttatt #### Habp2_ID12057_3 --> 2 - 1 Original Alignment atCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCATCAGAGGGGATACCTTCAGTTGCAGCTGCCCAGCCCCCTTCTCGGGGAGCCGGTGCCAGACTg cccctgtgttttatgttcatttgactttgacagcccttgtccttgctcagatCTATGCCAGTCCAACCCTTGTGAACATGGGGGTGATTGTATTCTCAGAGGGGACACCTCCACCTGTAGCTGTCCCGGCCCATTCTCAGGAAGCCGATGCAAGAGTggtgagcatatggctaggcatccacaatgccactctactgatctgttccaa Alignment from CESAR atCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCATCAGAGGGGATACCTTCAGTTGCAGCTGCCCAGCCCCCTTCTCGGGGAGCCGGTGCCAGACTg cccctgtgttttatgttcatttgactttgacagcccttgtccttgctcagatCTATGCCAGTCCAACCCTTGTGAACATGGGGGTGATTGTATTCTCAGAGGGGACACCTCCACCTGTAGCTGTCCCGGCCCATTCTCAGGAAGCCGATGCAAGAGTggtgagcatatggctaggcatccacaatgccactctactgatctgttccaa Alignment from Spaln_aa2Genome ATCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCATCAGAGGGGATACCTTCAGTTGCAGCTGCCCAGCCCCCTTCTCGGGGAGCCGGTGCCAGACTG cccctgtgttttatgttcatttgactttgacagcccttgtccttgctcagATCTATGCCAGTCCAACCCTTGTGAACATGGGGGTGATTGTATTCTCAGAGGGGACACCTCCACCTGTAGCTGTCCCGGCCCATTCTCAGGAAGCCGATGCAAGAGTGgtgagcatatggctaggcatccacaatgccactctactgatctgttccaa Alignment from Spaln_nt2Genome ATCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCATCAGAGGGGATACCTTCAGTTGCAGCTGCCCAGCCCCCTTCTCGGGGAGCCGGTGCCAGACTG cccctgtgttttatgttcatttgactttgacagcccttgtccttgctcagATCTATGCCAGTCCAACCCTTGTGAACATGGGGGTGATTGTATTCTCAGAGGGGACACCTCCACCTGTAGCTGTCCCGGCCCATTCTCAGGAAGCCGATGCAAGAGTGgtgagcatatggctaggcatccacaatgccactctactgatctgttccaa Alignment from Pairagon ATCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCATCAGAGGGGATACCTTCAGTTGCAGCTGCCCAGCCCCCTTCTCGGGGAGCCGGTGCCAGACTG cccctgtgttttatgttcatttgactttgacagcccttgtccttgctcagATCTATGCCAGTCCAACCCTTGTGAACATGGGGGTGATTGTATTCTCAGAGGGGACACCTCCACCTGTAGCTGTCCCGGCCCATTCTCAGGAAGCCGATGCAAGAGTGgtgagcatatggctaggcatccacaatgccactctactgatctgttccaa Alignment from Exonerate_protein2genome cccctgtgttttatgttcatttgactttgacagcccttgtccttgctcagatctatgccagtccaacccttgtgaacatgggggtgattgtattctcagaggggacacctccacctgtagctgtcccggcccattctcaggaagccgatgcaagagtggtgagcatatggctaggcatccacaatgccactctactgatctgttccaa Alignment from Exonerate_coding2genome ATCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCATCAGAGGGGATACCTTCAGTTGCAGCTGCCCAGCCCCCTTCTCGGGGAGCCGGTGCCAGACTG cccctgtgttttatgttcatttgactttgacagcccttgtccttgctcagATCTATGCCAGTCCAACCCTTGTGAACATGGGGGTGATTGTATTCTCAGAGGGGACACCTCCACCTGTAGCTGTCCCGGCCCATTCTCAGGAAGCCGATGCAAGAGTGgtgagcatatggctaggcatccacaatgccactctactgatctgttccaa Alignment from GeneWise TGGGCTCTCACTGATGTCCTTCATT------GCGCCC---CCAGACCCAGATCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCATCAGAGGGGATACCTTCAGTTGCAGCTGCCCAGCCCCCTTCTCGGGGAGCCGGTGCCAGACTG CCCCTGTGTTTTATGTTCATTTGACTTTGACAGCCCTTGTCCTTGCTCAGATCTATGCCAGTCCAACCCTTGTGAACATGGGGGTGATTGTATTCTCAGAGGGGACACCTCCACCTGTAGCTGTCCCGGCCCATTCTCAGGAAGCCGATGCAAGAGTGgtgagcatatggctaggcatccacaatgccactctactgatctgttccaa #### Habp2_ID12061_7 --> 1 - 1 Original Alignment aAACCCAGATGGAGACCACAAACCCTGGTGTTTCGTCAAGGTGAACAGTGAGAAGGTGAAATGGGAATACTGTGATGTCACAGTCTGTCCAGTGCCTg ggtaatgcaaatatcatctcctggtgatctgtttcttggtgtggattcaggAATGAGGATGGAGACCACAAACTCTGGTGTTCAGTCAAGGTGAATGGTGAGAAGGTTAAATGGGAGTACTGTGATGTCACTGTTTGTCCAGTGCCTggtgagtttctatcaccttcacacagtttgcaaacaaagttgctgctggca Alignment from CESAR aAACCCAGATGGAGACCACAAACCCTGGTGTTTCGTCAAGGTGAACAGTGAGAAGGTGAAATGGGAATACTGTGATGTCACAGTCTGTCCAGTGCCTg ggtaatgcaaatatcatctcctggtgatctgtttcttggtgtggattcaggAATGAGGATGGAGACCACAAACTCTGGTGTTCAGTCAAGGTGAATGGTGAGAAGGTTAAATGGGAGTACTGTGATGTCACTGTTTGTCCAGTGCCTggtgagtttctatcaccttcacacagtttgcaaacaaagttgctgctggca Alignment from Spaln_aa2Genome AAACCCAGATGGAGACCACAAACCCTGGTGTTTCGTCAAGGTGAACAGTGAGAAGGTGAAATGGGAATACTGTGATGTCACAGTCTGTCCAGTGCCTG ggtaatgcaaatatcatctcctggtgatctgtttcttggtgtggattcagGAATGAGGATGGAGACCACAAACTCTGGTGTTCAGTCAAGGTGAATGGTGAGAAGGTTAAATGGGAGTACTGTGATGTCACTGTTTGTCCAGTGCCTGgtgagtttctatcaccttcacacagtttgcaaacaaagttgctgctggca Alignment from Spaln_nt2Genome AAACCCAGATGGAGACCACAAACCCTGGTGTTTCGTCAAGGTGAACAGTGAGAAGGTGAAATGGGAATACTGTGATGTCACAGTCTGTCCAGTGCCTG ggtaatgcaaatatcatctcctggtgatctgtttcttggtgtggattcagGAATGAGGATGGAGACCACAAACTCTGGTGTTCAGTCAAGGTGAATGGTGAGAAGGTTAAATGGGAGTACTGTGATGTCACTGTTTGTCCAGTGCCTGgtgagtttctatcaccttcacacagtttgcaaacaaagttgctgctggca Alignment from Pairagon AAACCCAGATGGAGACCACAAACCCTGGTGTTTCGTCAAGGTGAACAGTGAGAAGGTGAAATGGGAATACTGTGATGTCACAGTCTGTCCAGTGCCTG ggtaatgcaaatatcatctcctggtgatctgtttcttggtgtggattcagGAATGAGGATGGAGACCACAAACTCTGGTGTTCAGTCAAGGTGAATGGTGAGAAGGTTAAATGGGAGTACTGTGATGTCACTGTTTGTCCAGTGCCTGgtgagtttctatcaccttcacacagtttgcaaacaaagttgctgctggca Alignment from Exonerate_protein2genome AAACCCAGATGGAGACCACAAACCCTGGTGTTTCGTCAAGGTGAACAGTGAGAAGGTGAAATGGGAATACTGTGATGTCACAGTCTGTCCAGTGCCTG ggtaatgcaaatatcatctcctggtgatctgtttcttggtgtggattcagGAATGAGGATGGAGACCACAAACTCTGGTGTTCAGTCAAGGTGAATGGTGAGAAGGTTAAATGGGAGTACTGTGATGTCACTGTTTGTCCAGTGCCTGgtgagtttctatcaccttcacacagtttgcaaacaaagttgctgctggca Alignment from Exonerate_coding2genome AAACCCAGATGGAGACCACAAACCCTGGTGTTTCGTCAAGGTGAACAGTGAGAAGGTGAAATGGGAATACTGTGATGTCACAGTCTGTCCAGTGCCTG ggtaatgcaaatatcatctcctggtgatctgtttcttggtgtggattcagGAATGAGGATGGAGACCACAAACTCTGGTGTTCAGTCAAGGTGAATGGTGAGAAGGTTAAATGGGAGTACTGTGATGTCACTGTTTGTCCAGTGCCTGgtgagtttctatcaccttcacacagtttgcaaacaaagttgctgctggca Alignment from GeneWise AAACCCAGATGGAGACCACAAACCCTGGTGTTTCGTCAAGGTGAACAGTGAGAAGGTGAAATGGGAATACTGTGATGTCACAGTCTGTCCAGTGCCTG ggtaatgcaaatatcatctcctggtgatctgtttcttggtgtggattcagGAATGAGGATGGAGACCACAAACTCTGGTGTTCAGTCAAGGTGAATGGTGAGAAGGTTAAATGGGAGTACTGTGATGTCACTGTTTGTCCAGTGCCTGgtgagtttctatcaccttcacacagtttgcaaacaaagttgctgctggca #### Hectd2_ID7145_3 --> 2 - 2 Original Alignment tgAGAGACCTACCACCAATTTGTCTTGATGTTAGACAAAAACAGCGCATGTCTGTGGAAGCGTTACCATCTGAAGTGAAGGTCCCGCCCCTTCCAGAACCTTCTCTTCCTAGCCAGCCCAAAACTGTAAAAGACTTTga tccatatctggttatgactgaatggtcaccctcccctttgttcccctcagtgAGCGACCTACCGCCAATTTGTCTTGATGTTAGGCAAAAACATTGCACATCCGTGGAAGCACTACCATCTGAAGTAAAGATCCCTCCACTCCCAGAGCCCTCTCTTCCTAGCCAGCCTGAAACTGTAAAAGACTTTgagtgagtcctgtatagactaactgtatttagcatggaagggctacccatct Alignment from CESAR tgAGAGACCTACCACCAATTTGTCTTGATGTTAGACAAAAACAGCGCATGTCTGTGGAAGCGTTACCATCTGAAGTGAAGGTCCCGCCCCTTCCAGAACCTTCTCTTCCTAGCCAGCCCAAAACTGTAAAAGACTTTga tccatatctggttatgactgaatggtcaccctcccctttgttcccctcagtgAGCGACCTACCGCCAATTTGTCTTGATGTTAGGCAAAAACATTGCACATCCGTGGAAGCACTACCATCTGAAGTAAAGATCCCTCCACTCCCAGAGCCCTCTCTTCCTAGCCAGCCTGAAACTGTAAAAGACTTTgagtgagtcctgtatagactaactgtatttagcatggaagggctacccatct Alignment from Spaln_aa2Genome TGAGAGACCTACCACCAATTTGTCTTGATGTTAGACAAAAACAGCGCATGTCTGTGGAAGCGTTACCATCTGAAGTGAAGGTCCCGCCCCTTCCAGAACCTTCTCTTCCTAGCCAGCCCAAAACTGTAAAAGACTTTGA tccatatctggttatgactgaatggtcaccctcccctttgttcccctcagTGAGCGACCTACCGCCAATTTGTCTTGATGTTAGGCAAAAACATTGCACATCCGTGGAAGCACTACCATCTGAAGTAAAGATCCCTCCACTCCCAGAGCCCTCTCTTCCTAGCCAGCCTGAAACTGTAAAAGACTTTGAgtgagtcctgtatagactaactgtatttagcatggaagggctacccatct Alignment from Spaln_nt2Genome TGAGAGACCTACCACCAATTTGTCTTGATGTTAGACAAAAACAGCGCATGTCTGTGGAAGCGTTACCATCTGAAGTGAAGGTCCCGCCCCTTCCAGAACCTTCTCTTCCTAGCCAGCCCAAAACTGTAAAAGACTTTGA tccatatctggttatgactgaatggtcaccctcccctttgttcccctcagTGAGCGACCTACCGCCAATTTGTCTTGATGTTAGGCAAAAACATTGCACATCCGTGGAAGCACTACCATCTGAAGTAAAGATCCCTCCACTCCCAGAGCCCTCTCTTCCTAGCCAGCCTGAAACTGTAAAAGACTTTGAgtgagtcctgtatagactaactgtatttagcatggaagggctacccatct Alignment from Pairagon TGAGAGACCTACCACCAATTTGTCTTGATGTTAGACAAAAACAGCGCATGTCTGTGGAAGCGTTACCATCTGAAGTGAAGGTCCCGCCCCTTCCAGAACCTTCTCTTCCTAGCCAGCCCAAAACTGTAAAAGACTTTGA tccatatctggttatgactgaatggtcaccctcccctttgttcccctcagTGAGCGACCTACCGCCAATTTGTCTTGATGTTAGGCAAAAACATTGCACATCCGTGGAAGCACTACCATCTGAAGTAAAGATCCCTCCACTCCCAGAGCCCTCTCTTCCTAGCCAGCCTGAAACTGTAAAAGACTTTGAgtgagtcctgtatagactaactgtatttagcatggaagggctacccatct Alignment from Exonerate_protein2genome TGAGAGACCTACCACCAATTTGTCTTGATGTTAGACAAAAACAGCGCATGTCTGTGGAAGCGTTACCATCTGAAGTGAAGGTCCCGCCCCTTCCAGAACCTTCTCTTCCTAGCCAGCCCAAAACTGTAAAAGACTTTGA tccatatctggttatgactgaatggtcaccctcccctttgttcccctcagTGAGCGACCTACCGCCAATTTGTCTTGATGTTAGGCAAAAACATTGCACATCCGTGGAAGCACTACCATCTGAAGTAAAGATCCCTCCACTCCCAGAGCCCTCTCTTCCTAGCCAGCCTGAAACTGTAAAAGACTTTGAgtgagtcctgtatagactaactgtatttagcatggaagggctacccatct Alignment from Exonerate_coding2genome tccatatctggttatgactgaatggtcaccctcccctttgttcccctcagtgagcgacctaccgccaatttgtcttgatgttaggcaaaaacattgcacatccgtggaagcactaccatctgaagtaaagatccctccactcccagagccctctcttcctagccagcctgaaactgtaaaagactttgagtgagtcctgtatagactaactgtatttagcatggaagggctacccatct Alignment from GeneWise TGAGAGACCTACCACCAATTTGTCTTGATGTTAGACAAAAACAGCGCATGTCTGTGGAAGCGTTACCATCTGAAGTGAAGGTCCCGCCCCTTCCAGAACCTTCTCTTCCTAGCCAGCCCAAAACTGTAAAAGACTTTGA tccatatctggttatgactgaatggtcaccctcccctttgttcccctcagTGAGCGACCTACCGCCAATTTGTCTTGATGTTAGGCAAAAACATTGCACATCCGTGGAAGCACTACCATCTGAAGTAAAGATCCCTCCACTCCCAGAGCCCTCTCTTCCTAGCCAGCCTGAAACTGTAAAAGACTTTGAgtgagtcctgtatagactaactgtatttagcatggaagggctacccatct #### Hectd2_ID7147_5 --> 0 - 0 Original Alignment AAAGATGCCACGGCCTCATTTAATACTATTGAGGACTCTGGGCTTAATGCCAATTTGGTGAATGCTGTGTTTGATGCCTTACTTAATACT cctgcatcaaattacaagaaccctgaatgtatctatgtttttcccattagAAAGATGCAACAACATCCTTTAATACAATTGAGGATTCTGGGCTTAACACAAATTTAGTGAATGCTGTATTTGATGCCCTATTGAATACTgtatgtgcattcggagtaggttgggaatactattactcattctcttggcc Alignment from CESAR AAAGATGCCACGGCCTCATTTAATACTATTGAGGACTCTGGGCTTAATGCCAATTTGGTGAATGCTGTGTTTGATGCCTTACTTAATACT cctgcatcaaattacaagaaccctgaatgtatctatgtttttcccattagAAAGATGCAACAACATCCTTTAATACAATTGAGGATTCTGGGCTTAACACAAATTTAGTGAATGCTGTATTTGATGCCCTATTGAATACTgtatgtgcattcggagtaggttgggaatactattactcattctcttggcc Alignment from Spaln_aa2Genome AAAGATGCCACGGCCTCATTTAATACTATTGAGGACTCTGGGCTTAATGCCAATTTGGTGAATGCTGTGTTTGATGCCTTACTTAATACT cctgcatcaaattacaagaaccctgaatgtatctatgtttttcccattagAAAGATGCAACAACATCCTTTAATACAATTGAGGATTCTGGGCTTAACACAAATTTAGTGAATGCTGTATTTGATGCCCTATTGAATACTgtatgtgcattcggagtaggttgggaatactattactcattctcttggcc Alignment from Spaln_nt2Genome AAAGATGCCACGGCCTCATTTAATACTATTGAGGACTCTGGGCTTAATGCCAATTTGGTGAATGCTGTGTTTGATGCCTTACTTAATACT cctgcatcaaattacaagaaccctgaatgtatctatgtttttcccattagAAAGATGCAACAACATCCTTTAATACAATTGAGGATTCTGGGCTTAACACAAATTTAGTGAATGCTGTATTTGATGCCCTATTGAATACTgtatgtgcattcggagtaggttgggaatactattactcattctcttggcc Alignment from Pairagon AAAGATGCCACGGCCTCATTTAATACTATTGAGGACTCTGGGCTTAATGCCAATTTGGTGAATGCTGTGTTTGATGCCTTACTTAATACT cctgcatcaaattacaagaaccctgaatgtatctatgtttttcccattagAAAGATGCAACAACATCCTTTAATACAATTGAGGATTCTGGGCTTAACACAAATTTAGTGAATGCTGTATTTGATGCCCTATTGAATACTgtatgtgcattcggagtaggttgggaatactattactcattctcttggcc Alignment from Exonerate_protein2genome AAAGATGCCACGGCCTCATTTAATACTATTGAGGACTCTGGGCTTAATGCCAATTTGGTGAATGCTGTGTTTGATGCCTTACTTAATACT cctgcatcaaattacaagaaccctgaatgtatctatgtttttcccattagAAAGATGCAACAACATCCTTTAATACAATTGAGGATTCTGGGCTTAACACAAATTTAGTGAATGCTGTATTTGATGCCCTATTGAATACTgtatgtgcattcggagtaggttgggaatactattactcattctcttggcc Alignment from Exonerate_coding2genome AAAGATGCCACGGCCTCATTTAATACTATTGAGGACTCTGGGCTTAATGCCAATTTGGTGAATGCTGTGTTTGATGCCTTACTTAATACT cctgcatcaaattacaagaaccctgaatgtatctatgtttttcccattagAAAGATGCAACAACATCCTTTAATACAATTGAGGATTCTGGGCTTAACACAAATTTAGTGAATGCTGTATTTGATGCCCTATTGAATACTgtatgtgcattcggagtaggttgggaatactattactcattctcttggcc Alignment from GeneWise AAAGATGCCACGGCCTCATTTAATACTATTGAGGACTCTGGGCTTAATGCCAATTTGGTGAATGCTGTGTTTGATGCCTTACTTAATACT cctgcatcaaattacaagaaccctgaatgtatctatgtttttcccattagAAAGATGCAACAACATCCTTTAATACAATTGAGGATTCTGGGCTTAACACAAATTTAGTGAATGCTGTATTTGATGCCCTATTGAATACTgtatgtgcattcggagtaggttgggaatactattactcattctcttggcc #### Hectd2_ID7150_8 --> 0 - 2 Original Alignment AATCCTCAATTTAATATCACATCTACATATGTCATCTATGCTCATTTGCTACGACAGATAGCTACCTTAGTGGAAGCTGACCATCACTTCCTAGTTCACTGGCTTAAAaa tcacccaatagttaaagtcagttcaacttttaactttcttttctttacagAATCCCCGTTTCAATATCACATCTACATATGTCATCTATGCTCATTTGCTCCGACAGATAGCCACAGTAGTCGAGGCTGACCATTACTTCCTAGTTCACTGGCCTAAAaagtaacaaagcttcttgtaactcgggttaactacaactcatagagttatat Alignment from CESAR AATCCTCAATTTAATATCACATCTACATATGTCATCTATGCTCATTTGCTACGACAGATAGCTACCTTAGTGGAAGCTGACCATCACTTCCTAGTTCACTGGCTTAAAaa tcacccaatagttaaagtcagttcaacttttaactttcttttctttacagAATCCCCGTTTCAATATCACATCTACATATGTCATCTATGCTCATTTGCTCCGACAGATAGCCACAGTAGTCGAGGCTGACCATTACTTCCTAGTTCACTGGCCTAAAaagtaacaaagcttcttgtaactcgggttaactacaactcatagagttatat Alignment from Spaln_aa2Genome AATCCTCAATTTAATATCACATCTACATATGTCATCTATGCTCATTTGCTACGACAGATAGCTACCTTAGTGGAAGCTGACCATCACTTCCTAGTTCACTGGCTTAAAAA tcacccaatagttaaagtcagttcaacttttaactttcttttctttacagAATCCCCGTTTCAATATCACATCTACATATGTCATCTATGCTCATTTGCTCCGACAGATAGCCACAGTAGTCGAGGCTGACCATTACTTCCTAGTTCACTGGCCTAAAAAgtaacaaagcttcttgtaactcgggttaactacaactcatagagttatat Alignment from Spaln_nt2Genome AATCCTCAATTTAATATCACATCTACATATGTCATCTATGCTCATTTGCTACGACAGATAGCTACCTTAGTGGAAGCTGACCATCACTTCCTAGTTCACTGGCTTAAAAA tcacccaatagttaaagtcagttcaacttttaactttcttttctttacagAATCCCCGTTTCAATATCACATCTACATATGTCATCTATGCTCATTTGCTCCGACAGATAGCCACAGTAGTCGAGGCTGACCATTACTTCCTAGTTCACTGGCCTAAAAAgtaacaaagcttcttgtaactcgggttaactacaactcatagagttatat Alignment from Pairagon AATCCTCAATTTAATATCACATCTACATATGTCATCTATGCTCATTTGCTACGACAGATAGCTACCTTAGTGGAAGCTGACCATCACTTCCTAGTTCACTGGCTTAAAAA tcacccaatagttaaagtcagttcaacttttaactttcttttctttacagAATCCCCGTTTCAATATCACATCTACATATGTCATCTATGCTCATTTGCTCCGACAGATAGCCACAGTAGTCGAGGCTGACCATTACTTCCTAGTTCACTGGCCTAAAAAgtaacaaagcttcttgtaactcgggttaactacaactcatagagttatat Alignment from Exonerate_protein2genome AATCCTCAATTTAATATCACATCTACATATGTCATCTATGCTCATTTGCTACGACAGATAGCTACCTTAGTGGAAGCTGACCATCACTTCCTAGTTCACTGGCTTAAAAA tcacccaatagttaaagtcagttcaacttttaactttcttttctttacagAATCCCCGTTTCAATATCACATCTACATATGTCATCTATGCTCATTTGCTCCGACAGATAGCCACAGTAGTCGAGGCTGACCATTACTTCCTAGTTCACTGGCCTAAAAAgtaacaaagcttcttgtaactcgggttaactacaactcatagagttatat Alignment from Exonerate_coding2genome AATCCTCAATTTAATATCACATCTACATATGTCATCTATGCTCATTTGCTACGACAGATAGCTACCTTAGTGGAAGCTGACCATCACTTCCTAGTTCACTGGCTTAAAAA tcacccaatagttaaagtcagttcaacttttaactttcttttctttacagAATCCCCGTTTCAATATCACATCTACATATGTCATCTATGCTCATTTGCTCCGACAGATAGCCACAGTAGTCGAGGCTGACCATTACTTCCTAGTTCACTGGCCTAAAAAgtaacaaagcttcttgtaactcgggttaactacaactcatagagttatat Alignment from GeneWise AATCCTCAATTTAATATCACATCTACATATGTCATCTATGCTCATTTGCTACGACAGATAGCTACCTTAGTGGAAGCTGACCATCACTTCCTAGTTCACTGGCTTAAAAA tcacccaatagttaaagtcagttcaacttttaactttcttttctttacagAATCCCCGTTTCAATATCACATCTACATATGTCATCTATGCTCATTTGCTCCGACAGATAGCCACAGTAGTCGAGGCTGACCATTACTTCCTAGTTCACTGGCCTAAAAAgtaacaaagcttcttgtaactcgggttaactacaactcatagagttatat #### Hectd2_ID7154_12 --> 0 - 0 Original Alignment CAAAGTCTGGTGGATAAAGTATCTCGAAGACAAAGACCTGATATGAATATGTTATTTCTAAATATGAAAGTAAGGAGGACACATCTGGTTAGCGACTCACTTGATGAG tgttcagttaaaaatactgtttggtgatgtattgtactttcttctctcagCAAAGTCTGGTGGATAAAGTATCTAGAAGACAAAGACCTGATATGAATATGTTATATTTAAACATGAAGGTAAGGAGGACACATCTGGTTAGCGACTCTCTTGATGAGgtgagttcccctccaagatggttgatcaaaaatggggttcttcagctaaa Alignment from CESAR CAAAGTCTGGTGGATAAAGTATCTCGAAGACAAAGACCTGATATGAATATGTTATTTCTAAATATGAAAGTAAGGAGGACACATCTGGTTAGCGACTCACTTGATGAG tgttcagttaaaaatactgtttggtgatgtattgtactttcttctctcagCAAAGTCTGGTGGATAAAGTATCTAGAAGACAAAGACCTGATATGAATATGTTATATTTAAACATGAAGGTAAGGAGGACACATCTGGTTAGCGACTCTCTTGATGAGgtgagttcccctccaagatggttgatcaaaaatggggttcttcagctaaa Alignment from Spaln_aa2Genome CAAAGTCTGGTGGATAAAGTATCTCGAAGACAAAGACCTGATATGAATATGTTATTTCTAAATATGAAAGTAAGGAGGACACATCTGGTTAGCGACTCACTTGATGAG tgttcagttaaaaatactgtttggtgatgtattgtactttcttctctcagCAAAGTCTGGTGGATAAAGTATCTAGAAGACAAAGACCTGATATGAATATGTTATATTTAAACATGAAGGTAAGGAGGACACATCTGGTTAGCGACTCTCTTGATGAGgtgagttcccctccaagatggttgatcaaaaatggggttcttcagctaaa Alignment from Spaln_nt2Genome CAAAGTCTGGTGGATAAAGTATCTCGAAGACAAAGACCTGATATGAATATGTTATTTCTAAATATGAAAGTAAGGAGGACACATCTGGTTAGCGACTCACTTGATGAG tgttcagttaaaaatactgtttggtgatgtattgtactttcttctctcagCAAAGTCTGGTGGATAAAGTATCTAGAAGACAAAGACCTGATATGAATATGTTATATTTAAACATGAAGGTAAGGAGGACACATCTGGTTAGCGACTCTCTTGATGAGgtgagttcccctccaagatggttgatcaaaaatggggttcttcagctaaa Alignment from Pairagon CAAAGTCTGGTGGATAAAGTATCTCGAAGACAAAGACCTGATATGAATATGTTATTTCTAAATATGAAAGTAAGGAGGACACATCTGGTTAGCGACTCACTTGATGAG tgttcagttaaaaatactgtttggtgatgtattgtactttcttctctcagCAAAGTCTGGTGGATAAAGTATCTAGAAGACAAAGACCTGATATGAATATGTTATATTTAAACATGAAGGTAAGGAGGACACATCTGGTTAGCGACTCTCTTGATGAGgtgagttcccctccaagatggttgatcaaaaatggggttcttcagctaaa Alignment from Exonerate_protein2genome CAAAGTCTGGTGGATAAAGTATCTCGAAGACAAAGACCTGATATGAATATGTTATTTCTAAATATGAAAGTAAGGAGGACACATCTGGTTAGCGACTCACTTGATGAG tgttcagttaaaaatactgtttggtgatgtattgtactttcttctctcagCAAAGTCTGGTGGATAAAGTATCTAGAAGACAAAGACCTGATATGAATATGTTATATTTAAACATGAAGGTAAGGAGGACACATCTGGTTAGCGACTCTCTTGATGAGgtgagttcccctccaagatggttgatcaaaaatggggttcttcagctaaa Alignment from Exonerate_coding2genome CAAAGTCTGGTGGATAAAGTATCTCGAAGACAAAGACCTGATATGAATATGTTATTTCTAAATATGAAAGTAAGGAGGACACATCTGGTTAGCGACTCACTTGATGAG tgttcagttaaaaatactgtttggtgatgtattgtactttcttctctcagCAAAGTCTGGTGGATAAAGTATCTAGAAGACAAAGACCTGATATGAATATGTTATATTTAAACATGAAGGTAAGGAGGACACATCTGGTTAGCGACTCTCTTGATGAGgtgagttcccctccaagatggttgatcaaaaatggggttcttcagctaaa Alignment from GeneWise CAAAGTCTGGTGGATAAAGTATCTCGAAGACAAAGACCTGATATGAATATGTTATTTCTAAATATGAAAGTAAGGAGGACACATCTGGTTAGCGACTCACTTGATGAG tgttcagttaaaaatactgtttggtgatgtattgtactttcttctctcagCAAAGTCTGGTGGATAAAGTATCTAGAAGACAAAGACCTGATATGAATATGTTATATTTAAACATGAAGGTAAGGAGGACACATCTGGTTAGCGACTCTCTTGATGAGgtgagttcccctccaagatggttgatcaaaaatggggttcttcagctaaa #### Hectd2_ID7156_14 --> 2 - 0 Original Alignment gcATGTTTACATACCACAAGGATTCACACTGCCATTGGTTTAGCAGCTTTAAATGTGATAACTATTCTGAATTCCGATTGGTTGGAATT attctaatcacttgtagcactcgataacccaatttttctttgtggatcaggtATGTTTACATACCACAAAGACTCGCAC---CACTGGTTTAGCAGCTTTAAGTGTGACAACTATTCTGAATTCAGATTGGTTGGAATTgtaaccttgatatctccaaaacatattctcaatcagtgtatggagatatc Alignment from CESAR gcATGTTTACATACCACAAGGATTCACACTGCCATTGGTTTAGCAGCTTTAAATGTGATAACTATTCTGAATTCCGATTGGTTGGAATT attctaatcacttgtagcactcgataacccaatttttctttgtggatcaggtATGTTTACATACCACAAAGACTCGCAC---CACTGGTTTAGCAGCTTTAAGTGTGACAACTATTCTGAATTCAGATTGGTTGGAATTgtaaccttgatatctccaaaacatattctcaatcagtgtatggagatatc Alignment from Spaln_aa2Genome GCATGTTTACATACCACAAGGATTCACACTGCCATTGGTTTAGCAGCTTTAAATGTGATAACTATTCTGAATTCCGATTGGTTGGAATT attctaatcacttgtagcactcgataacccaatttttctttgtggatcagGTATGTTTACATACCACAAAGACTCGCAC---CACTGGTTTAGCAGCTTTAAGTGTGACAACTATTCTGAATTCAGATTGGTTGGAATTgtaaccttgatatctccaaaacatattctcaatcagtgtatggagatatc Alignment from Spaln_nt2Genome GCATGTTTACATACCACAAGGATTCACACTGCCATTGGTTTAGCAGCTTTAAATGTGATAACTATTCTGAATTCCGATTGGTTGGAATT attctaatcacttgtagcactcgataacccaatttttctttgtggatcagGTATGTTTACATACCACAAAGACTCGCA---CCACTGGTTTAGCAGCTTTAAGTGTGACAACTATTCTGAATTCAGATTGGTTGGAATTgtaaccttgatatctccaaaacatattctcaatcagtgtatggagatatc Alignment from Pairagon GCATGTTTACATACCACAAGGATTCACACTGCCATTGGTTTAGCAGCTTTAAATGTGATAACTATTCTGAATTCCGATTGGTTGGAATT attctaatcacttgtagcactcgataacccaatttttctttgtggatcagGTATGTTTACATACCACAAAGACTCGCA---CCACTGGTTTAGCAGCTTTAAGTGTGACAACTATTCTGAATTCAGATTGGTTGGAATTgtaaccttgatatctccaaaacatattctcaatcagtgtatggagatatc Alignment from Exonerate_protein2genome GCATGTTTACATACCACAAGGATTCACACTGCCATTGGTTTAGCAGCTTTAAATGTGATAACTATTCTGAATTCCGATTGGTTGGAATT attctaatcacttgtagcactcgataacccaatttttctttgtggatcagGTATGTTTACATACCACAAAGACTCGCAC---CACTGGTTTAGCAGCTTTAAGTGTGACAACTATTCTGAATTCAGATTGGTTGGAATTgtaaccttgatatctccaaaacatattctcaatcagtgtatggagatatc Alignment from Exonerate_coding2genome GCATGTTTACATACCACAAGGATTCACACTGCCATTGGTTTAGCAGCTTTAAATGTGATAACTATTCTGAATTCCGATTGGTTGGAATT attctaatcacttgtagcactcgataacccaatttttctttgtggatcagGTATGTTTACATACCACAAAGACTCGCAC---CACTGGTTTAGCAGCTTTAAGTGTGACAACTATTCTGAATTCAGATTGGTTGGAATTgtaaccttgatatctccaaaacatattctcaatcagtgtatggagatatc Alignment from GeneWise GCATGTTTACATACCACAAGGATTCACACTGCCATTGGTTTAGCAGCTTTAAATGTGATAACTATTCTGAATTCCGATTGGTTGGAATT attctaatcacttgtagcactcgataacccaatttttctttgtggatcagGTATGTTTACATACCACAAAGACTCGCAC---CACTGGTTTAGCAGCTTTAAGTGTGACAACTATTCTGAATTCAGATTGGTTGGAATTgtaaccttgatatctccaaaacatattctcaatcagtgtatggagatatc #### Hectd2_ID7160_16 --> 0 - 0 Original Alignment GAATTGGCCCATGGACTAAAGGAACTTTTATCATATGAAGGCAACGTTGAAGAAGATTTCTATTCAACATTTCAG aagaaggcatccagcaagttcggaagagattatactcatttctcccacagGAATTGGCCCATGGACTAAAGGAGCTTTTATCATATGAAGGCAACGTTGAAGAAGACATCTATTCAACCTATCAGgtttgtatagaattgtgcagccaagctagcacaaacctgctcctgaataa Alignment from CESAR GAATTGGCCCATGGACTAAAGGAACTTTTATCATATGAAGGCAACGTTGAAGAAGATTTCTATTCAACATTTCAG aagaaggcatccagcaagttcggaagagattatactcatttctcccacagGAATTGGCCCATGGACTAAAGGAGCTTTTATCATATGAAGGCAACGTTGAAGAAGACATCTATTCAACCTATCAGgtttgtatagaattgtgcagccaagctagcacaaacctgctcctgaataa Alignment from Spaln_aa2Genome GAATTGGCCCATGGACTAAAGGAACTTTTATCATATGAAGGCAACGTTGAAGAAGATTTCTATTCAACATTTCAG aagaaggcatccagcaagttcggaagagattatactcatttctcccacagGAATTGGCCCATGGACTAAAGGAGCTTTTATCATATGAAGGCAACGTTGAAGAAGACATCTATTCAACCTATCAGgtttgtatagaattgtgcagccaagctagcacaaacctgctcctgaataa Alignment from Spaln_nt2Genome GAATTGGCCCATGGACTAAAGGAACTTTTATCATATGAAGGCAACGTTGAAGAAGATTTCTATTCAACATTTCAG aagaaggcatccagcaagttcggaagagattatactcatttctcccacagGAATTGGCCCATGGACTAAAGGAGCTTTTATCATATGAAGGCAACGTTGAAGAAGACATCTATTCAACCTATCAGgtttgtatagaattgtgcagccaagctagcacaaacctgctcctgaataa Alignment from Pairagon GAATTGGCCCATGGACTAAAGGAACTTTTATCATATGAAGGCAACGTTGAAGAAGATTTCTATTCAACATTTCAG aagaaggcatccagcaagttcggaagagattatactcatttctcccacagGAATTGGCCCATGGACTAAAGGAGCTTTTATCATATGAAGGCAACGTTGAAGAAGACATCTATTCAACCTATCAGgtttgtatagaattgtgcagccaagctagcacaaacctgctcctgaataa Alignment from Exonerate_protein2genome GAATTGGCCCATGGACTAAAGGAACTTTTATCATATGAAGGCAACGTTGAAGAAGATTTCTATTCAACATTTCAG aagaaggcatccagcaagttcggaagagattatactcatttctcccacagGAATTGGCCCATGGACTAAAGGAGCTTTTATCATATGAAGGCAACGTTGAAGAAGACATCTATTCAACCTATCAGgtttgtatagaattgtgcagccaagctagcacaaacctgctcctgaataa Alignment from Exonerate_coding2genome GAATTGGCCCATGGACTAAAGGAACTTTTATCATATGAAGGCAACGTTGAAGAAGATTTCTATTCAACATTTCAG aagaaggcatccagcaagttcggaagagattatactcatttctcccacagGAATTGGCCCATGGACTAAAGGAGCTTTTATCATATGAAGGCAACGTTGAAGAAGACATCTATTCAACCTATCAGgtttgtatagaattgtgcagccaagctagcacaaacctgctcctgaataa Alignment from GeneWise GAATTGGCCCATGGACTAAAGGAACTTTTATCATATGAAGGCAACGTTGAAGAAGATTTCTATTCAACATTTCAG aagaaggcatccagcaagttcggaagagattatactcatttctcccacagGAATTGGCCCATGGACTAAAGGAGCTTTTATCATATGAAGGCAACGTTGAAGAAGACATCTATTCAACCTATCAGgtttgtatagaattgtgcagccaagctagcacaaacctgctcctgaataa #### Hectd2_ID7162_18 --> 2 - 0 Original Alignment agTATGTACAGCTTTATACTGACTTCCTGTTGAACAAATCTATCTATAAGCAATTTGCTGCATTTTACTGTGGATTTCATAGTGTGTGTGCTTCAAATGCCCTAATG tgttctccttttagacccaatgtccttcacctcaactctggcacttccagagTACATACAACTCTATACTGACTTCCTGTTAAACAAGTCTATTTATAAGCAATTTGCTGCATTCTACTGTGGCTTTCATAGTGTGTGTGCTTCCAATGCATTGATGgtaagtttagatttcaattgaacgggtctaataattgataactgatccca Alignment from CESAR agTATGTACAGCTTTATACTGACTTCCTGTTGAACAAATCTATCTATAAGCAATTTGCTGCATTTTACTGTGGATTTCATAGTGTGTGTGCTTCAAATGCCCTAATG tgttctccttttagacccaatgtccttcacctcaactctggcacttccagagTACATACAACTCTATACTGACTTCCTGTTAAACAAGTCTATTTATAAGCAATTTGCTGCATTCTACTGTGGCTTTCATAGTGTGTGTGCTTCCAATGCATTGATGgtaagtttagatttcaattgaacgggtctaataattgataactgatccca Alignment from Spaln_aa2Genome AGTATGTACAGCTTTATACTGACTTCCTGTTGAACAAATCTATCTATAAGCAATTTGCTGCATTTTACTGTGGATTTCATAGTGTGTGTGCTTCAAATGCCCTAATG tgttctccttttagacccaatgtccttcacctcaactctggcacttccagAGTACATACAACTCTATACTGACTTCCTGTTAAACAAGTCTATTTATAAGCAATTTGCTGCATTCTACTGTGGCTTTCATAGTGTGTGTGCTTCCAATGCATTGATGgtaagtttagatttcaattgaacgggtctaataattgataactgatccca Alignment from Spaln_nt2Genome AGTATGTACAGCTTTATACTGACTTCCTGTTGAACAAATCTATCTATAAGCAATTTGCTGCATTTTACTGTGGATTTCATAGTGTGTGTGCTTCAAATGCCCTAATG tgttctccttttagacccaatgtccttcacctcaactctggcacttccagAGTACATACAACTCTATACTGACTTCCTGTTAAACAAGTCTATTTATAAGCAATTTGCTGCATTCTACTGTGGCTTTCATAGTGTGTGTGCTTCCAATGCATTGATGgtaagtttagatttcaattgaacgggtctaataattgataactgatccca Alignment from Pairagon AGTATGTACAGCTTTATACTGACTTCCTGTTGAACAAATCTATCTATAAGCAATTTGCTGCATTTTACTGTGGATTTCATAGTGTGTGTGCTTCAAATGCCCTAATG tgttctccttttagacccaatgtccttcacctcaactctggcacttccagAGTACATACAACTCTATACTGACTTCCTGTTAAACAAGTCTATTTATAAGCAATTTGCTGCATTCTACTGTGGCTTTCATAGTGTGTGTGCTTCCAATGCATTGATGgtaagtttagatttcaattgaacgggtctaataattgataactgatccca Alignment from Exonerate_protein2genome AGTATGTACAGCTTTATACTGACTTCCTGTTGAACAAATCTATCTATAAGCAATTTGCTGCATTTTACTGTGGATTTCATAGTGTGTGTGCTTCAAATGCCCTAATG tgttctccttttagacccaatgtccttcacctcaactctggcacttccagAGTACATACAACTCTATACTGACTTCCTGTTAAACAAGTCTATTTATAAGCAATTTGCTGCATTCTACTGTGGCTTTCATAGTGTGTGTGCTTCCAATGCATTGATGgtaagtttagatttcaattgaacgggtctaataattgataactgatccca Alignment from Exonerate_coding2genome AGTATGTACAGCTTTATACTGACTTCCTGTTGAACAAATCTATCTATAAGCAATTTGCTGCATTTTACTGTGGATTTCATAGTGTGTGTGCTTCAAATGCCCTAATG tgttctccttttagacccaatgtccttcacctcaactctggcacttccagAGTACATACAACTCTATACTGACTTCCTGTTAAACAAGTCTATTTATAAGCAATTTGCTGCATTCTACTGTGGCTTTCATAGTGTGTGTGCTTCCAATGCATTGATGgtaagtttagatttcaattgaacgggtctaataattgataactgatccca Alignment from GeneWise AGTATGTACAGCTTTATACTGACTTCCTGTTGAACAAATCTATCTATAAGCAATTTGCTGCATTTTACTGTGGATTTCATAGTGTGTGTGCTTCAAATGCCCTAATG tgttctccttttagacccaatgtccttcacctcaactctggcacttccagAGTACATACAACTCTATACTGACTTCCTGTTAAACAAGTCTATTTATAAGCAATTTGCTGCATTCTACTGTGGCTTTCATAGTGTGTGTGCTTCCAATGCATTGATGgtaagtttagatttcaattgaacgggtctaataattgataactgatccca #### Hells_ID7695_2 --> 0 - 0 Original Alignment GCTCAAAAGTCTTGGGACAGAGAGTCCACTGAAATTCGGTACCGCAGACTTCAGCATTTGCTTGAAAAAAGCAATATCTACTCAAAATTTTTGTTGACTAAAATGGAACAACAGCAATTGGAG ctgttggacctagcatattgttgtacataatggtctcgtttggttttcagGCTCAAAAGTCATGGGACAGAGAGTCCACTGAGATTCGGTACTGCAGATTGCAGCACTTGCTTGAAAAAAGCAATATTTACTCAAAATTTTTGGTGACCAAAATGGAACAACAACAATTGGAAgttagtggctctgtcatccagcaaaaccagctgtctggttagatgtctgt Alignment from CESAR GCTCAAAAGTCTTGGGACAGAGAGTCCACTGAAATTCGGTACCGCAGACTTCAGCATTTGCTTGAAAAAAGCAATATCTACTCAAAATTTTTGTTGACTAAAATGGAACAACAGCAATTGGAG ctgttggacctagcatattgttgtacataatggtctcgtttggttttcagGCTCAAAAGTCATGGGACAGAGAGTCCACTGAGATTCGGTACTGCAGATTGCAGCACTTGCTTGAAAAAAGCAATATTTACTCAAAATTTTTGGTGACCAAAATGGAACAACAACAATTGGAAgttagtggctctgtcatccagcaaaaccagctgtctggttagatgtctgt Alignment from Spaln_aa2Genome GCTCAAAAGTCTTGGGACAGAGAGTCCACTGAAATTCGGTACCGCAGACTTCAGCATTTGCTTGAAAAAAGCAATATCTACTCAAAATTTTTGTTGACTAAAATGGAACAACAGCAATTGGAG ctgttggacctagcatattgttgtacataatggtctcgtttggttttcagGCTCAAAAGTCATGGGACAGAGAGTCCACTGAGATTCGGTACTGCAGATTGCAGCACTTGCTTGAAAAAAGCAATATTTACTCAAAATTTTTGGTGACCAAAATGGAACAACAACAATTGGAAgttagtggctctgtcatccagcaaaaccagctgtctggttagatgtctgt Alignment from Spaln_nt2Genome GCTCAAAAGTCTTGGGACAGAGAGTCCACTGAAATTCGGTACCGCAGACTTCAGCATTTGCTTGAAAAAAGCAATATCTACTCAAAATTTTTGTTGACTAAAATGGAACAACAGCAATTGGAG ctgttggacctagcatattgttgtacataatggtctcgtttggttttcagGCTCAAAAGTCATGGGACAGAGAGTCCACTGAGATTCGGTACTGCAGATTGCAGCACTTGCTTGAAAAAAGCAATATTTACTCAAAATTTTTGGTGACCAAAATGGAACAACAACAATTGGAAgttagtggctctgtcatccagcaaaaccagctgtctggttagatgtctgt Alignment from Pairagon GCTCAAAAGTCTTGGGACAGAGAGTCCACTGAAATTCGGTACCGCAGACTTCAGCATTTGCTTGAAAAAAGCAATATCTACTCAAAATTTTTGTTGACTAAAATGGAACAACAGCAATTGGAG ctgttggacctagcatattgttgtacataatggtctcgtttggttttcagGCTCAAAAGTCATGGGACAGAGAGTCCACTGAGATTCGGTACTGCAGATTGCAGCACTTGCTTGAAAAAAGCAATATTTACTCAAAATTTTTGGTGACCAAAATGGAACAACAACAATTGGAAgttagtggctctgtcatccagcaaaaccagctgtctggttagatgtctgt Alignment from Exonerate_protein2genome GCTCAAAAGTCTTGGGACAGAGAGTCCACTGAAATTCGGTACCGCAGACTTCAGCATTTGCTTGAAAAAAGCAATATCTACTCAAAATTTTTGTTGACTAAAATGGAACAACAGCAATTGGAG ctgttggacctagcatattgttgtacataatggtctcgtttggttttcagGCTCAAAAGTCATGGGACAGAGAGTCCACTGAGATTCGGTACTGCAGATTGCAGCACTTGCTTGAAAAAAGCAATATTTACTCAAAATTTTTGGTGACCAAAATGGAACAACAACAATTGGAAgttagtggctctgtcatccagcaaaaccagctgtctggttagatgtctgt Alignment from Exonerate_coding2genome ctgttggacctagcatattgttgtacataatggtctcgtttggttttcaggctcaaaagtcatgggacagagagtccactgagattcggtactgcagattgcagcacttgcttgaaaaaagcaatatttactcaaaatttttggtgaccaaaatggaacaacaacaattggaagttagtggctctgtcatccagcaaaaccagctgtctggttagatgtctgt Alignment from GeneWise GCTCAAAAGTCTTGGGACAGAGAGTCCACTGAAATTCGGTACCGCAGACTTCAGCATTTGCTTGAAAAAAGCAATATCTACTCAAAATTTTTGTTGACTAAAATGGAACAACAGCAATTGGAG ctgttggacctagcatattgttgtacataatggtctcgtttggttttcagGCTCAAAAGTCATGGGACAGAGAGTCCACTGAGATTCGGTACTGCAGATTGCAGCACTTGCTTGAAAAAAGCAATATTTACTCAAAATTTTTGGTGACCAAAATGGAACAACAACAATTGGAAgttagtggctctgtcatccagcaaaaccagctgtctggttagatgtctgt #### Hells_ID7696_3 --> 0 - 0 Original Alignment GAACAGAAGAAGAAAGAGAAGTTGGAGAAAAAAAAACGGTCATTAAAACTTACAGAG acagactatgttcttcttctaaagagctcctaatcccttgtatgtcctagGAACAGAAAAAGAAGGAGGAATTGGAGAGGAGAAAGCAATCACTAAAGCTCACTGAGgtgagtttgcaagtctgattataggacttgtcaggtgctcagccatgact Alignment from CESAR GAACAGAAGAAGAAAGAGAAGTTGGAGAAAAAAAAACGGTCATTAAAACTTACAGAG acagactatgttcttcttctaaagagctcctaatcccttgtatgtcctagGAACAGAAAAAGAAGGAGGAATTGGAGAGGAGAAAGCAATCACTAAAGCTCACTGAGgtgagtttgcaagtctgattataggacttgtcaggtgctcagccatgact Alignment from Spaln_aa2Genome GAACAGAAGAAGAAAGAGAAGTTGGAGAAAAAAAAACGGTCATTAAAACTTACAGAG acagactatgttcttcttctaaagagctcctaatcccttgtatgtcctagGAACAGAAAAAGAAGGAGGAATTGGAGAGGAGAAAGCAATCACTAAAGCTCACTGAGgtgagtttgcaagtctgattataggacttgtcaggtgctcagccatgact Alignment from Spaln_nt2Genome GAACAGAAGAAGAAAGAGAAGTTGGAGAAAAAAAAACGGTCATTAAAACTTACAGAG acagactatgttcttcttctaaagagctcctaatcccttgtatgtcctagGAACAGAAAAAGAAGGAGGAATTGGAGAGGAGAAAGCAATCACTAAAGCTCACTGAGgtgagtttgcaagtctgattataggacttgtcaggtgctcagccatgact Alignment from Pairagon GAACAGAAGAAGAAAGAGAAGTTGGAGAAAAAAAAACGGTCATTAAAACTTACAGAG acagactatgttcttcttctaaagagctcctaatcccttgtatgtcctagGAACAGAAAAAGAAGGAGGAATTGGAGAGGAGAAAGCAATCACTAAAGCTCACTGAGgtgagtttgcaagtctgattataggacttgtcaggtgctcagccatgact Alignment from Exonerate_protein2genome GAACAGAAGAAGAAAGAGAAGTTGGAGAAAAAAAAACGGTCATTAAAACTTACAGAG acagactatgttcttcttctaaagagctcctaatcccttgtatgtcctagGAACAGAAAAAGAAGGAGGAATTGGAGAGGAGAAAGCAATCACTAAAGCTCACTGAGgtgagtttgcaagtctgattataggacttgtcaggtgctcagccatgact Alignment from Exonerate_coding2genome acagactatgttcttcttctaaagagctcctaatcccttgtatgtcctaggaacagaaaaagaaggaggaattggagaggagaaagcaatcactaaagctcactgaggtgagtttgcaagtctgattataggacttgtcaggtgctcagccatgact Alignment from GeneWise GAACAGAAGAAGAAAGAGAAGTTGGAGAAAAAAAAACGGTCATTAAAACTTACAGAG acagactatgttcttcttctaaagagctcctaatcccttgtatgtcctagGAACAGAAAAAGAAGGAGGAATTGGAGAGGAGAAAGCAATCACTAAAGCTCACTGAGgtgagtttgcaagtctgattataggacttgtcaggtgctcagccatgact #### Hells_ID7700_7 --> 0 - 0 Original Alignment GATGAAAGCTCTTCCACTACGAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCTCAAACTGTTAGGCAGAATTCTAAATTCTTTTTTGACCCAGTTCGGAAATGTAACGGACAGCCTGTACCCTTTCAACAACCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCTTAGG aaatgtagtgccatttagctgtatcttaccttgtgcatttctctccttagGATGAAAGCTCTTCAACTACAGGTCTTTGTGTAGAAGATATTCAGAAAAACAAGGATTCAAATAGTATGATTAAAGATAGATTGTCCCAAACTGTGAGGCAAAATTCTAAGTTTTATTTTGACCCAGTTCGGAAATGTAATGGACAGCCAGTGCCCCTACAACAACCAAAGCATTTTACAGGGGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCCCAGGgtactgaatcttcttctcttcttctcctgagctacagtcatattactgga Alignment from CESAR GATGAAAGCTCTTCCACTACGAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCTCAAACTGTTAGGCAGAATTCTAAATTCTTTTTTGACCCAGTTCGGAAATGTAACGGACAGCCTGTACCCTTTCAACAACCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCTTAGG aaatgtagtgccatttagctgtatcttaccttgtgcatttctctccttagGATGAAAGCTCTTCAACTACAGGTCTTTGTGTAGAAGATATTCAGAAAAACAAGGATTCAAATAGTATGATTAAAGATAGATTGTCCCAAACTGTGAGGCAAAATTCTAAGTTTTATTTTGACCCAGTTCGGAAATGTAATGGACAGCCAGTGCCCCTACAACAACCAAAGCATTTTACAGGGGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCCCAGGgtactgaatcttcttctcttcttctcctgagctacagtcatattactgga Alignment from Spaln_aa2Genome GATGAAAGCTCTTCCACTACGAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCTCAAACTGTTAGGCAGAATTCTAAATTCTTTTTTGACCCAGTTCGGAAATGTAACGGACAGCCTGTACCCTTTCAACAACCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCTTAGG aaatgtagtgccatttagctgtatcttaccttgtgcatttctctccttagGATGAAAGCTCTTCAACTACAGGTCTTTGTGTAGAAGATATTCAGAAAAACAAGGATTCAAATAGTATGATTAAAGATAGATTGTCCCAAACTGTGAGGCAAAATTCTAAGTTTTATTTTGACCCAGTTCGGAAATGTAATGGACAGCCAGTGCCCCTACAACAACCAAAGCATTTTACAGGGGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCCCAGGgtactgaatcttcttctcttcttctcctgagctacagtcatattactgga Alignment from Spaln_nt2Genome GATGAAAGCTCTTCCACTACGAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCTCAAACTGTTAGGCAGAATTCTAAATTCTTTTTTGACCCAGTTCGGAAATGTAACGGACAGCCTGTACCCTTTCAACAACCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCTTAGG aaatgtagtgccatttagctgtatcttaccttgtgcatttctctccttagGATGAAAGCTCTTCAACTACAGGTCTTTGTGTAGAAGATATTCAGAAAAACAAGGATTCAAATAGTATGATTAAAGATAGATTGTCCCAAACTGTGAGGCAAAATTCTAAGTTTTATTTTGACCCAGTTCGGAAATGTAATGGACAGCCAGTGCCCCTACAACAACCAAAGCATTTTACAGGGGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCCCAGGgtactgaatcttcttctcttcttctcctgagctacagtcatattactgga Alignment from Pairagon GATGAAAGCTCTTCCACTACGAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCTCAAACTGTTAGGCAGAATTCTAAATTCTTTTTTGACCCAGTTCGGAAATGTAACGGACAGCCTGTACCCTTTCAACAACCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCTTAGG aaatgtagtgccatttagctgtatcttaccttgtgcatttctctccttagGATGAAAGCTCTTCAACTACAGGTCTTTGTGTAGAAGATATTCAGAAAAACAAGGATTCAAATAGTATGATTAAAGATAGATTGTCCCAAACTGTGAGGCAAAATTCTAAGTTTTATTTTGACCCAGTTCGGAAATGTAATGGACAGCCAGTGCCCCTACAACAACCAAAGCATTTTACAGGGGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCCCAGGgtactgaatcttcttctcttcttctcctgagctacagtcatattactgga Alignment from Exonerate_protein2genome GATGAAAGCTCTTCCACTACGAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCTCAAACTGTTAGGCAGAATTCTAAATTCTTTTTTGACCCAGTTCGGAAATGTAACGGACAGCCTGTACCCTTTCAACAACCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCTTAGG aaatgtagtgccatttagctgtatcttaccttgtgcatttctctccttagGATGAAAGCTCTTCAACTACAGGTCTTTGTGTAGAAGATATTCAGAAAAACAAGGATTCAAATAGTATGATTAAAGATAGATTGTCCCAAACTGTGAGGCAAAATTCTAAGTTTTATTTTGACCCAGTTCGGAAATGTAATGGACAGCCAGTGCCCCTACAACAACCAAAGCATTTTACAGGGGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCCCAGGgtactgaatcttcttctcttcttctcctgagctacagtcatattactgga Alignment from Exonerate_coding2genome GATGAAAGCTCTTCCACTACGAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCTCAAACTGTTAGGCAGAATTCTAAATTCTTTTTTGACCCAGTTCGGAAATGTAACGGACAGCCTGTACCCTTTCAACAACCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCTTAGG aaatgtagtgccatttagctgtatcttaccttgtgcatttctctccttagGATGAAAGCTCTTCAACTACAGGTCTTTGTGTAGAAGATATTCAGAAAAACAAGGATTCAAATAGTATGATTAAAGATAGATTGTCCCAAACTGTGAGGCAAAATTCTAAGTTTTATTTTGACCCAGTTCGGAAATGTAATGGACAGCCAGTGCCCCTACAACAACCAAAGCATTTTACAGGGGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCCCAGGgtactgaatcttcttctcttcttctcctgagctacagtcatattactgga Alignment from GeneWise GATGAAAGCTCTTCCACTACGAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCTCAAACTGTTAGGCAGAATTCTAAATTCTTTTTTGACCCAGTTCGGAAATGTAACGGACAGCCTGTACCCTTTCAACAACCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCTTAGG aaatgtagtgccatttagctgtatcttaccttgtgcatttctctccttagGATGAAAGCTCTTCAACTACAGGTCTTTGTGTAGAAGATATTCAGAAAAACAAGGATTCAAATAGTATGATTAAAGATAGATTGTCCCAAACTGTGAGGCAAAATTCTAAGTTTTATTTTGACCCAGTTCGGAAATGTAATGGACAGCCAGTGCCCCTACAACAACCAAAGCATTTTACAGGGGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCCCAGGgtactgaatcttcttctcttcttctcctgagctacagtcatattactgga #### Hells_ID7706_13 --> 0 - 2 Original Alignment AAGGAAACAGTTGAGCTAAGTCCTACTGGAAGACCAAAACGACGAAGTAGAAAGTCAATAAATTACAGCGAACTAGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCAGAAGTAAACAGAGAGag ccttgccatctgtgcactaagaacaaacctttctggcctttttgatcaagAAAGATACAGTAGAGCTTAGCCCAATTGGAAGGCCTAAAAGACGAAGTAGAAAG---ATAAATTACAGTGAACTAGATCAGTTTCCCAGTGAACTTGAGAAACTGATAAGCCAAATACAG---CAAGCTAACAGAGATaggtaagtcactataataacctataaactaggggtttatttgcttgtctaat Alignment from CESAR AAGGAAACAGTTGAGCTAAGTCCTACTGGAAGACCAAAACGACGAAGTAGAAAGTCAATAAATTACAGCGAACTAGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCAGAAGTAAACAGAGAGag ccttgccatctgtgcactaagaacaaacctttctggcctttttgatcaagAAAGATACAGTAGAGCTTAGCCCAATTGGAAGGCCTAAAAGACGAAGTAGAAAG---ATAAATTACAGTGAACTAGATCAGTTTCCCAGTGAACTTGAGAAACTGATAAGCCAAATACAGCAA---GCTAACAGAGATaggtaagtcactataataacctataaactagggagttcgttttcttgtttcc Alignment from Spaln_aa2Genome AAGGAAACAGTTGAGCTAAGTCCTACTGGAAGACCAAAACGACGAAGTAGAAAGTCAATAAATTACAGCGAACTAGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCAGAAGTAAACAGAGAGAG ccttgccatctgtgcactaagaacaaacctttctggcctttttgatcaagAAAGATACAGTAGAGCTTAGCCCAATTGGAAGGCCTAAAAGACGAAGTAGAAAG---ATAAATTACAGTGAACTAGATCAGTTTCCCAGTGAACTTGAGAAACTGATAAGCCAAATACAG---CAAGCTAACAGAGATAGgtaagtcactataataacctataaactaggggtttatttgcttgtctaat Alignment from Spaln_nt2Genome AAGGAAACAGTTGAGCTAAGTCCTACTGGAAGACCAAAACGACGAAGTAGAAAGTCAATAAATTACAGCGAACTAGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCAGAAGTAAACAGAGAGAG ccttgccatctgtgcactaagaacaaacctttctggcctttttgatcaagAAAGATACAGTAGAGCTTAGCCCAATTGGAAGGCCTAAAAGACGAAGTAGAAAG---ATAAATTACAGTGAACTAGATCAGTTTCCCAGTGAACTTGAGAAACTGATAAGCCAAATACAGC---AAGCTAACAGAGATAGgtaagtcactataataacctataaactaggggtttatttgcttgtctaat Alignment from Pairagon AAGGAAACAGTTGAGCTAAGTCCTACTGGAAGACCAAAACGACGAAGTAGAAAGTCAATAAATTACAGCGAACTAGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCAGAAGTAAACAGAGAGAGG------------------------------------------------- ccttgccatctgtgcactaagaacaaacctttctggcctttttgatcaagAAAGATACAGTAGAGCTTAGCCCAATTGGAAGGCCTAAAAGACGAAGTAGAAAG---ATAAATTACAGTGAACTAGATCAGTTTCCCAGTGAACTTGAGAAACTGATAAGCCAAATACAGC---AAGCTAACAGAGATAGGTAAGTCACTATAATAACCTATAAACTAGGGGTTTATTTGCTTGTCTAAT Alignment from Exonerate_protein2genome AAGGAAACAGTTGAGCTAAGTCCTACTGGAAGACCAAAACGACGAAGTAGAAAGTCAATAAATTACAGCGAACTAGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCAGAAGTAAACAGAGAGAG ccttgccatctgtgcactaagaacaaacctttctggcctttttgatcaagAAAGATACAGTAGAGCTTAGCCCAATTGGAAGGCCTAAAAGACGAAGTAGAAAG---ATAAATTACAGTGAACTAGATCAGTTTCCCAGTGAACTTGAGAAACTGATAAGCCAAATACAG---CAAGCTAACAGAGATAGgtaagtcactataataacctataaactaggggtttatttgcttgtctaat Alignment from Exonerate_coding2genome AAGGAAACAGTTGAGCTAAGTCCTACTGGAAGACCAAAACGACGAAGTAGAAAGTCAATAAATTACAGCGAACTAGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCAGAAGTAAACAGAGAGAG ccttgccatctgtgcactaagaacaaacctttctggcctttttgatcaagAAAGATACAGTAGAGCTTAGCCCAATTGGAAGGCCTAAAAGACGAAGTAGAAAG---ATAAATTACAGTGAACTAGATCAGTTTCCCAGTGAACTTGAGAAACTGATAAGCCAAATACAG---CAAGCTAACAGAGATAGgtaagtcactataataacctataaactaggggtttatttgcttgtctaat Alignment from GeneWise AAGGAAACAGTTGAGCTAAGTCCTACTGGAAGACCAAAACGACGAAGTAGAAAGTCAATAAATTACAGCGAACTAGATCAGTTCCCTAGTGAATTAGAAAAACTAATAAGTCAAATACAGCCAGAAGTAAACAGAGAGAG ccttgccatctgtgcactaagaacaaacctttctggcctttttgatcaagAAAGATACAGTAGAGCTTAGCCCAATTGGAAGGCCTAAAAGACGAAGTAGAAAG---ATAAATTACAGTGAACTAGATCAGTTTCCCAGTGAACTTGAGAAACTGATAAGCCAAATACAG---CAAGCTAACAGAGATAGgtaagtcactataataacctataaactaggggtttatttgcttgtctaat #### Hells_ID7710_17 --> 0 - 0 Original Alignment ATATACAGTTTCAACACGGATCCAGATGTTTTTCTTTTCTTAGTGAGTACACGAGCTGGTGGTTTAGGCATAAACTTGACTGCAGCAGATACAGTGATCATTTATGACAGTGATTGG tgtgtcacacatggtgtaccaccacactaactgtgttttcttttgggtagATATACAGGTTCAACTTGGAGCCAGATCTCTTTCTTTTCCTAGTCAGTACCCGAGCAGGTGGTTTAGGCATAAATTTGATGTCTACAGATACA---ATCATTCATGACAGTGATTGGgtggtgactacaaaattattctgattctacaactcagaccactacatgac Alignment from CESAR ATATACAGTTTCAACACGGATCCAGATGTTTTTCTTTTCTTAGTGAGTACACGAGCTGGTGGTTTAGGCATAAACTTGACTGCAGCAGATACAGTGATCATTTATGACAGTGATTGG tgtgtcacacatggtgtaccaccacactaactgtgttttcttttgggtagATATACAGGTTCAACTTGGAGCCAGATCTCTTTCTTTTCCTAGTCAGTACCCGAGCAGGTGGTTTAGGCATAAATTTGATGTCTACAGATACA---ATCATTCATGACAGTGATTGGgtggtgactacaaaattattctgattctacaactcagaccactacatgac Alignment from Spaln_aa2Genome ATATACAGTTTCAACACGGATCCAGATGTTTTTCTTTTCTTAGTGAGTACACGAGCTGGTGGTTTAGGCATAAACTTGACTGCAGCAGATACAGTGATCATTTATGACAGTGATTGG tgtgtcacacatggtgtaccaccacactaactgtgttttcttttgggtagATATACAGGTTCAACTTGGAGCCAGATCTCTTTCTTTTCCTAGTCAGTACCCGAGCAGGTGGTTTAGGCATAAATTTGATGTCTACAGATACA---ATCATTCATGACAGTGATTGGgtggtgactacaaaattattctgattctacaactcagaccactacatgac Alignment from Spaln_nt2Genome ATATACAGTTTCAACACGGATCCAGATGTTTTTCTTTTCTTAGTGAGTACACGAGCTGGTGGTTTAGGCATAAACTTGACTGCAGCAGATACAGTGATCATTTATGACAGTGATTGG tgtgtcacacatggtgtaccaccacactaactgtgttttcttttgggtagATATACAGGTTCAACTTGGAGCCAGATCTCTTTCTTTTCCTAGTCAGTACCCGAGCAGGTGGTTTAGGCATAAATTTGATGTCTACAGATACA---ATCATTCATGACAGTGATTGGgtggtgactacaaaattattctgattctacaactcagaccactacatgac Alignment from Pairagon ATATACAGTTTCAACACGGATCCAGATGTTTTTCTTTTCTTAGTGAGTACACGAGCTGGTGGTTTAGGCATAAACTTGACTGCAGCAGATACAGTGATCATTTATGACAGTGATTGG tgtgtcacacatggtgtaccaccacactaactgtgttttcttttgggtagATATACAGGTTCAACTTGGAGCCAGATCTCTTTCTTTTCCTAGTCAGTACCCGAGCAGGTGGTTTAGGCATAAATTTGATGTCTACAGATACA---ATCATTCATGACAGTGATTGGgtggtgactacaaaattattctgattctacaactcagaccactacatgac Alignment from Exonerate_protein2genome ATATACAGTTTCAACACGGATCCAGATGTTTTTCTTTTCTTAGTGAGTACACGAGCTGGTGGTTTAGGCATAAACTTGACTGCAGCAGATACAGTGATCATTTATGACAGTGATTGG tgtgtcacacatggtgtaccaccacactaactgtgttttcttttgggtagATATACAGGTTCAACTTGGAGCCAGATCTCTTTCTTTTCCTAGTCAGTACCCGAGCAGGTGGTTTAGGCATAAATTTGATGTCTACAGATACA---ATCATTCATGACAGTGATTGGgtggtgactacaaaattattctgattctacaactcagaccactacatgac Alignment from Exonerate_coding2genome ATATACAGTTTCAACACGGATCCAGATGTTTTTCTTTTCTTAGTGAGTACACGAGCTGGTGGTTTAGGCATAAACTTGACTGCAGCAGATACAGTGATCATTTATGACAGTGATTGG tgtgtcacacatggtgtaccaccacactaactgtgttttcttttgggtagATATACAGGTTCAACTTGGAGCCAGATCTCTTTCTTTTCCTAGTCAGTACCCGAGCAGGTGGTTTAGGCATAAATTTGATGTCTACAGATACA---ATCATTCATGACAGTGATTGGgtggtgactacaaaattattctgattctacaactcagaccactacatgac Alignment from GeneWise ATATACAGTTTCAACACGGATCCAGATGTTTTTCTTTTCTTAGTGAGTACACGAGCTGGTGGTTTAGGCATAAACTTGACTGCAGCAGATACAGTGATCATTTATGACAGTGATTGG tgtgtcacacatggtgtaccaccacactaactgtgttttcttttgggtagATATACAGGTTCAACTTGGAGCCAGATCTCTTTCTTTTCCTAGTCAGTACCCGAGCAGGTGGTTTAGGCATAAATTTGATGTCTACAGATACA---ATCATTCATGACAGTGATTGGgtggtgactacaaaattattctgattctacaactcagaccactacatgac #### Hhex_ID7337_2 --> 2 - 0 Original Alignment gcAAGCCCTTGCTCTGGAGCCCCTTCCTCCAGCGACCTCTGCACAAAAGGAAAGGCGGTCAAGTGAGGTTCTCCAACGACCAGACCGTCGAGCTGGAGAAGAAGTTCGAGACTCAGAAATACCTCTCCCCACCC---GAGAGAAAGCGTCTGGCCAAGATGTTACAGCTCAGTGAGAGACAG ctggccagtccacatgcccctttggttatggcccgcctgctgatctgcaggtGAGCCTTTGCTCTGGAGCCCATTCCTCCAGCAACCCCTGCACCAAAGAAAGGGTGGTCAGGTCAGATTCTCTAATGACCAGACTGTTGAGTTGGAGAGGAAGTTCGAGACCCAGAAGTACCTTTCCCCACCACCTGATAGGAAGCATCCAGCCAAAATGTTGCAGCTTACTGAGAGACAGgtgagtcacacccatctgttaggaacacagctgcgccagggtctgaatat Alignment from CESAR gcAAGCCCTTGCTCTGGAGCCCCTTCCTCCAGCGACCTCTGCACAAAAGGAAAGGCGGTCAAGTGAGGTTCTCCAACGACCAGACCGTCGAGCTGGAGAAGAAGTTCGAGACTCAGAAATACCTCTCC---CCACCCGAGAGAAAGCGTCTGGCCAAGATGTTACAGCTCAGTGAGAGACAG ctggccagtccacatgcccctttggttatggcccgcctgctgatctgcaggtGAGCCTTTGCTCTGGAGCCCATTCCTCCAGCAACCCCTGCACCAAAGAAAGGGTGGTCAGGTCAGATTCTCTAATGACCAGACTGTTGAGTTGGAGAGGAAGTTCGAGACCCAGAAGTACCTTTCCCCACCACCTGATAGGAAGCATCCAGCCAAAATGTTGCAGCTTACTGAGAGACAGgtgagtcacacccatctgttaggaacacagctgcgccagggtctgaatat Alignment from Spaln_aa2Genome GCAAGCCCTTGCTCTGGAGCCCCTTCCTCCAGCGACCTCTGCACAAAAGGAAAGGCGGTCAAGTGAGGTTCTCCAACGACCAGACCGTCGAGCTGGAGAAGAAGTTCGAGACTCAGAAATACCTCTCC---CCACCCGAGAGAAAGCGTCTGGCCAAGATGTTACAGCTCAGTGAGAGACAG ctggccagtccacatgcccctttggttatggcccgcctgctgatctgcagGTGAGCCTTTGCTCTGGAGCCCATTCCTCCAGCAACCCCTGCACCAAAGAAAGGGTGGTCAGGTCAGATTCTCTAATGACCAGACTGTTGAGTTGGAGAGGAAGTTCGAGACCCAGAAGTACCTTTCCCCACCACCTGATAGGAAGCATCCAGCCAAAATGTTGCAGCTTACTGAGAGACAGgtgagtcacacccatctgttaggaacacagctgcgccagggtctgaatat Alignment from Spaln_nt2Genome GCAAGCCCTTGCTCTGGAGCCCCTTCCTCCAGCGACCTCTGCACAAAAGGAAAGGCGGTCAAGTGAGGTTCTCCAACGACCAGACCGTCGAGCTGGAGAAGAAGTTCGAGACTCAGAAATACCTCTCCCCACCC---GAGAGAAAGCGTCTGGCCAAGATGTTACAGCTCAGTGAGAGACAG ctggccagtccacatgcccctttggttatggcccgcctgctgatctgcagGTGAGCCTTTGCTCTGGAGCCCATTCCTCCAGCAACCCCTGCACCAAAGAAAGGGTGGTCAGGTCAGATTCTCTAATGACCAGACTGTTGAGTTGGAGAGGAAGTTCGAGACCCAGAAGTACCTTTCCCCACCACCTGATAGGAAGCATCCAGCCAAAATGTTGCAGCTTACTGAGAGACAGgtgagtcacacccatctgttaggaacacagctgcgccagggtctgaatat Alignment from Pairagon GCAAGCCCTTGCTCTGGAGCCCCTTCCTCCAGCGACCTCTGCACAAAAGGAAAGGCGGTCAAGTGAGGTTCTCCAACGACCAGACCGTCGAGCTGGAGAAGAAGTTCGAGACTCAGAAATACCTCTCC---CCACCCGAGAGAAAGCGTCTGGCCAAGATGTTACAGCTCAGTGAGAGACAG ctggccagtccacatgcccctttggttatggcccgcctgctgatctgcagGTGAGCCTTTGCTCTGGAGCCCATTCCTCCAGCAACCCCTGCACCAAAGAAAGGGTGGTCAGGTCAGATTCTCTAATGACCAGACTGTTGAGTTGGAGAGGAAGTTCGAGACCCAGAAGTACCTTTCCCCACCACCTGATAGGAAGCATCCAGCCAAAATGTTGCAGCTTACTGAGAGACAGgtgagtcacacccatctgttaggaacacagctgcgccagggtctgaatat Alignment from Exonerate_protein2genome GCAAGCCCTTGCTCTGGAGCCCCTTCCTCCAGCGACCTCTGCACAAAAGGAAAGGCGGTCAAGTGAGGTTCTCCAACGACCAGACCGTCGAGCTGGAGAAGAAGTTCGAGACTCAGAAATACCTCTCC---CCACCCGAGAGAAAGCGTCTGGCCAAGATGTTACAGCTCAGTGAGAGACAG ctggccagtccacatgcccctttggttatggcccgcctgctgatctgcagGTGAGCCTTTGCTCTGGAGCCCATTCCTCCAGCAACCCCTGCACCAAAGAAAGGGTGGTCAGGTCAGATTCTCTAATGACCAGACTGTTGAGTTGGAGAGGAAGTTCGAGACCCAGAAGTACCTTTCCCCACCACCTGATAGGAAGCATCCAGCCAAAATGTTGCAGCTTACTGAGAGACAGgtgagtcacacccatctgttaggaacacagctgcgccagggtctgaatat Alignment from Exonerate_coding2genome GGCAAGCCCTTGCTCTGGAGCCCCTTCCTCCAGCGACCTCTGCACAAAAGGAAAGGCGGTCAAGTGAGGTTCTCCAACGACCAGACCGTCGAGCTGGAGAAGAAGTTCGAGACTCAGAAATACCTCTCC---CCACCCGAGAGAAAGCGTCTGGCCAAGATGTTACAGCTCAGTGAGAGACAG ctggccagtccacatgcccctttggttatggcccgcctgctgatctgcaGGTGAGCCTTTGCTCTGGAGCCCATTCCTCCAGCAACCCCTGCACCAAAGAAAGGGTGGTCAGGTCAGATTCTCTAATGACCAGACTGTTGAGTTGGAGAGGAAGTTCGAGACCCAGAAGTACCTTTCCCCACCACCTGATAGGAAGCATCCAGCCAAAATGTTGCAGCTTACTGAGAGACAGgtgagtcacacccatctgttaggaacacagctgcgccagggtctgaatat Alignment from GeneWise GCAAGCCCTTGCTCTGGAGCCCCTTCCTCCAGCGACCTCTGCACAAAAGGAAAGGCGGTCAAGTGAGGTTCTCCAACGACCAGACCGTCGAGCTGGAGAAGAAGTTCGAGACTCAGAAATACCTCTCCCCACCC---GAGAGAAAGCGTCTGGCCAAGATGTTACAGCTCAGTGAGAGACAG ctggccagtccacatgcccctttggttatggcccgcctgctgatctgcagGTGAGCCTTTGCTCTGGAGCCCATTCCTCCAGCAACCCCTGCACCAAAGAAAGGGTGGTCAGGTCAGATTCTCTAATGACCAGACTGTTGAGTTGGAGAGGAAGTTCGAGACCCAGAAGTACCTTTCCCCACCACCTGATAGGAAGCATCCAGCCAAAATGTTGCAGCTTACTGAGAGACAGgtgagtcacacccatctgttaggaacacagctgcgccagggtctgaatat #### Hif1an_ID9066_4 --> 2 - 0 Original Alignment gaAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTTTTTGCCCAAATAAAAGGCCATAAGAGATGCATCTTATTTCCTCCGGATCAGTTCGAGTGCCTCTATCCATACCCTGTCCATCACCCCTGTGACAGGCAGAGCCAG atgcaatctacatatggggacaagtatgttgaaatctttcctataaacaggcAATGTGACACCTGCACACTATGATGAACAGCAGAATTTCTTTGCCCAAATAAAGGGTCATGAAAGATGTATTTTATTCCCCCCTGATCAATTTGAGTGCTTATATCCATTCCCTGTCCAGCACCCCTGCGACTGGCAGAGCCAGgtgagttcaaaggtgatctataatgctgtcccaaatctttcccagttact Alignment from CESAR gaAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTTTTTGCCCAAATAAAAGGCCATAAGAGATGCATCTTATTTCCTCCGGATCAGTTCGAGTGCCTCTATCCATACCCTGTCCATCACCCCTGTGACAGGCAGAGCCAG atgcaatctacatatggggacaagtatgttgaaatctttcctataaacaggcAATGTGACACCTGCACACTATGATGAACAGCAGAATTTCTTTGCCCAAATAAAGGGTCATGAAAGATGTATTTTATTCCCCCCTGATCAATTTGAGTGCTTATATCCATTCCCTGTCCAGCACCCCTGCGACTGGCAGAGCCAGgtgagttcaaaggtgatctataatgctgtcccaaatctttcccagttact Alignment from Spaln_aa2Genome GAAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTTTTTGCCCAAATAAAAGGCCATAAGAGATGCATCTTATTTCCTCCGGATCAGTTCGAGTGCCTCTATCCATACCCTGTCCATCACCCCTGTGACAGGCAGAGCCAG atgcaatctacatatggggacaagtatgttgaaatctttcctataaacagGCAATGTGACACCTGCACACTATGATGAACAGCAGAATTTCTTTGCCCAAATAAAGGGTCATGAAAGATGTATTTTATTCCCCCCTGATCAATTTGAGTGCTTATATCCATTCCCTGTCCAGCACCCCTGCGACTGGCAGAGCCAGgtgagttcaaaggtgatctataatgctgtcccaaatctttcccagttact Alignment from Spaln_nt2Genome GAAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTTTTTGCCCAAATAAAAGGCCATAAGAGATGCATCTTATTTCCTCCGGATCAGTTCGAGTGCCTCTATCCATACCCTGTCCATCACCCCTGTGACAGGCAGAGCCAG atgcaatctacatatggggacaagtatgttgaaatctttcctataaacagGCAATGTGACACCTGCACACTATGATGAACAGCAGAATTTCTTTGCCCAAATAAAGGGTCATGAAAGATGTATTTTATTCCCCCCTGATCAATTTGAGTGCTTATATCCATTCCCTGTCCAGCACCCCTGCGACTGGCAGAGCCAGgtgagttcaaaggtgatctataatgctgtcccaaatctttcccagttact Alignment from Pairagon GAAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTTTTTGCCCAAATAAAAGGCCATAAGAGATGCATCTTATTTCCTCCGGATCAGTTCGAGTGCCTCTATCCATACCCTGTCCATCACCCCTGTGACAGGCAGAGCCAG atgcaatctacatatggggacaagtatgttgaaatctttcctataaacagGCAATGTGACACCTGCACACTATGATGAACAGCAGAATTTCTTTGCCCAAATAAAGGGTCATGAAAGATGTATTTTATTCCCCCCTGATCAATTTGAGTGCTTATATCCATTCCCTGTCCAGCACCCCTGCGACTGGCAGAGCCAGgtgagttcaaaggtgatctataatgctgtcccaaatctttcccagttact Alignment from Exonerate_protein2genome GAAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTTTTTGCCCAAATAAAAGGCCATAAGAGATGCATCTTATTTCCTCCGGATCAGTTCGAGTGCCTCTATCCATACCCTGTCCATCACCCCTGTGACAGGCAGAGCCAG atgcaatctacatatggggacaagtatgttgaaatctttcctataaacagGCAATGTGACACCTGCACACTATGATGAACAGCAGAATTTCTTTGCCCAAATAAAGGGTCATGAAAGATGTATTTTATTCCCCCCTGATCAATTTGAGTGCTTATATCCATTCCCTGTCCAGCACCCCTGCGACTGGCAGAGCCAGgtgagttcaaaggtgatctataatgctgtcccaaatctttcccagttact Alignment from Exonerate_coding2genome GAAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTTTTTGCCCAAATAAAAGGCCATAAGAGATGCATCTTATTTCCTCCGGATCAGTTCGAGTGCCTCTATCCATACCCTGTCCATCACCCCTGTGACAGGCAGAGCCAG atgcaatctacatatggggacaagtatgttgaaatctttcctataaacagGCAATGTGACACCTGCACACTATGATGAACAGCAGAATTTCTTTGCCCAAATAAAGGGTCATGAAAGATGTATTTTATTCCCCCCTGATCAATTTGAGTGCTTATATCCATTCCCTGTCCAGCACCCCTGCGACTGGCAGAGCCAGgtgagttcaaaggtgatctataatgctgtcccaaatctttcccagttact Alignment from GeneWise GAAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTTTTTGCCCAAATAAAAGGCCATAAGAGATGCATCTTATTTCCTCCGGATCAGTTCGAGTGCCTCTATCCATACCCTGTCCATCACCCCTGTGACAGGCAGAGCCAG atgcaatctacatatggggacaagtatgttgaaatctttcctataaacagGCAATGTGACACCTGCACACTATGATGAACAGCAGAATTTCTTTGCCCAAATAAAGGGTCATGAAAGATGTATTTTATTCCCCCCTGATCAATTTGAGTGCTTATATCCATTCCCTGTCCAGCACCCCTGCGACTGGCAGAGCCAGgtgagttcaaaggtgatctataatgctgtcccaaatctttcccagttact #### Hif1an_ID9069_7 --> 0 - 0 Original Alignment GGGGCTCCCACCCCTAAGAGAATCGAATATCCTCTCAAAGCTCATCAGAAAGTAGCCATCATGAGAAACATTGAGAAGATGCTTGGAGAGGCCTTGGGGAACCCACAAGAG ccattaatggtggtggtgagctggccccggtgccctggttgtttccacagGGGGCTCCTACCCCTAAGCGAATTGAATATCTTCTCAAAGCTCATCAAAAAGTAGCGATCATGAGAAACATCAAAAAGATGCTCGAAGAGGCATTGGGGAACCCACAGGAGgtaatggtatttaccctctaatgtgtttagtccaccaacccatgtaggag Alignment from CESAR GGGGCTCCCACCCCTAAGAGAATCGAATATCCTCTCAAAGCTCATCAGAAAGTAGCCATCATGAGAAACATTGAGAAGATGCTTGGAGAGGCCTTGGGGAACCCACAAGAG ccattaatggtggtggtgagctggccccggtgccctggttgtttccacagGGGGCTCCTACCCCTAAGCGAATTGAATATCTTCTCAAAGCTCATCAAAAAGTAGCGATCATGAGAAACATCAAAAAGATGCTCGAAGAGGCATTGGGGAACCCACAGGAGgtaatggtatttaccctctaatgtgtttagtccaccaacccatgtaggag Alignment from Spaln_aa2Genome GGGGCTCCCACCCCTAAGAGAATCGAATATCCTCTCAAAGCTCATCAGAAAGTAGCCATCATGAGAAACATTGAGAAGATGCTTGGAGAGGCCTTGGGGAACCCACAAGAG ccattaatggtggtggtgagctggccccggtgccctggttgtttccacagGGGGCTCCTACCCCTAAGCGAATTGAATATCTTCTCAAAGCTCATCAAAAAGTAGCGATCATGAGAAACATCAAAAAGATGCTCGAAGAGGCATTGGGGAACCCACAGGAGgtaatggtatttaccctctaatgtgtttagtccaccaacccatgtaggag Alignment from Spaln_nt2Genome GGGGCTCCCACCCCTAAGAGAATCGAATATCCTCTCAAAGCTCATCAGAAAGTAGCCATCATGAGAAACATTGAGAAGATGCTTGGAGAGGCCTTGGGGAACCCACAAGAG ccattaatggtggtggtgagctggccccggtgccctggttgtttccacagGGGGCTCCTACCCCTAAGCGAATTGAATATCTTCTCAAAGCTCATCAAAAAGTAGCGATCATGAGAAACATCAAAAAGATGCTCGAAGAGGCATTGGGGAACCCACAGGAGgtaatggtatttaccctctaatgtgtttagtccaccaacccatgtaggag Alignment from Pairagon GGGGCTCCCACCCCTAAGAGAATCGAATATCCTCTCAAAGCTCATCAGAAAGTAGCCATCATGAGAAACATTGAGAAGATGCTTGGAGAGGCCTTGGGGAACCCACAAGAG ccattaatggtggtggtgagctggccccggtgccctggttgtttccacagGGGGCTCCTACCCCTAAGCGAATTGAATATCTTCTCAAAGCTCATCAAAAAGTAGCGATCATGAGAAACATCAAAAAGATGCTCGAAGAGGCATTGGGGAACCCACAGGAGgtaatggtatttaccctctaatgtgtttagtccaccaacccatgtaggag Alignment from Exonerate_protein2genome GGGGCTCCCACCCCTAAGAGAATCGAATATCCTCTCAAAGCTCATCAGAAAGTAGCCATCATGAGAAACATTGAGAAGATGCTTGGAGAGGCCTTGGGGAACCCACAAGAG ccattaatggtggtggtgagctggccccggtgccctggttgtttccacagGGGGCTCCTACCCCTAAGCGAATTGAATATCTTCTCAAAGCTCATCAAAAAGTAGCGATCATGAGAAACATCAAAAAGATGCTCGAAGAGGCATTGGGGAACCCACAGGAGgtaatggtatttaccctctaatgtgtttagtccaccaacccatgtaggag Alignment from Exonerate_coding2genome GGGGCTCCCACCCCTAAGAGAATCGAATATCCTCTCAAAGCTCATCAGAAAGTAGCCATCATGAGAAACATTGAGAAGATGCTTGGAGAGGCCTTGGGGAACCCACAAGAGGTG ccattaatggtggtggtgagctggccccggtgccctggttgtttccacagGGGGCTCCTACCCCTAAGCGAATTGAATATCTTCTCAAAGCTCATCAAAAAGTAGCGATCATGAGAAACATCAAAAAGATGCTCGAAGAGGCATTGGGGAACCCACAGGAGGTAatggtatttaccctctaatgtgtttagtccaccaacccatgtaggag Alignment from GeneWise GGGGCTCCCACCCCTAAGAGAATCGAATATCCTCTCAAAGCTCATCAGAAAGTAGCCATCATGAGAAACATTGAGAAGATGCTTGGAGAGGCCTTGGGGAACCCACAAGAGGTG ccattaatggtggtggtgagctggccccggtgccctggttgtttccacagGGGGCTCCTACCCCTAAGCGAATTGAATATCTTCTCAAAGCTCATCAAAAAGTAGCGATCATGAGAAACATCAAAAAGATGCTCGAAGAGGCATTGGGGAACCCACAGGAGGTAatggtatttaccctctaatgtgtttagtccaccaacccatgtaggag #### Hnrnpul2_ID2408_12 --> 2 - 0 Original Alignment tgGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG tcggctgatttctttgtgagtttgcaacggctgaccagtttcccctttagtgGGTGGACAGCACCGAGGCTATGACAACCAGGCCTATGGGCAGCAGTACTGGGGGCAGCCTGGAACCAGAGGAgtacgtgcacatccttcgtcactcatccttccaccctgttcctctaactg Alignment from CESAR tgGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG tcggctgatttctttgtgagtttgcaacggctgaccagtttcccctttagtgGGTGGACAGCACCGAGGCTATGACAACCAGGCCTATGGGCAGCAGTACTGGGGGCAGCCTGGAACCAGAGGAgtacgtgcacatccttcgtcactcatccttccaccctgttcctctaactg Alignment from Spaln_aa2Genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG tcggctgatttctttgtgagtttgcaacggctgaccagtttcccctttagTGGGTGGACAGCACCGAGGCTATGACAACCAGGCCTATGGGCAGCAGTACTGGGGGCAGCCTGGAACCAGAGGAgtacgtgcacatccttcgtcactcatccttccaccctgttcctctaactg Alignment from Spaln_nt2Genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG tcggctgatttctttgtgagtttgcaacggctgaccagtttcccctttagTGGGTGGACAGCACCGAGGCTATGACAACCAGGCCTATGGGCAGCAGTACTGGGGGCAGCCTGGAACCAGAGGAgtacgtgcacatccttcgtcactcatccttccaccctgttcctctaactg Alignment from Pairagon TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG tcggctgatttctttgtgagtttgcaacggctgaccagtttcccctttagTGGGTGGACAGCACCGAGGCTATGACAACCAGGCCTATGGGCAGCAGTACTGGGGGCAGCCTGGAACCAGAGGAgtacgtgcacatccttcgtcactcatccttccaccctgttcctctaactg Alignment from Exonerate_protein2genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG tcggctgatttctttgtgagtttgcaacggctgaccagtttcccctttagTGGGTGGACAGCACCGAGGCTATGACAACCAGGCCTATGGGCAGCAGTACTGGGGGCAGCCTGGAACCAGAGGAgtacgtgcacatccttcgtcactcatccttccaccctgttcctctaactg Alignment from Exonerate_coding2genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG tcggctgatttctttgtgagtttgcaacggctgaccagtttcccctttagTGGGTGGACAGCACCGAGGCTATGACAACCAGGCCTATGGGCAGCAGTACTGGGGGCAGCCTGGAACCAGAGGAgtacgtgcacatccttcgtcactcatccttccaccctgttcctctaactg Alignment from GeneWise TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG tcggctgatttctttgtgagtttgcaacggctgaccagtttcccctttagTGGGTGGACAGCACCGAGGCTATGACAACCAGGCCTATGGGCAGCAGTACTGGGGGCAGCCTGGAACCAGAGGAgtacgtgcacatccttcgtcactcatccttccaccctgttcctctaactg #### Hnrnpul2_ID2409_13 --> 0 - 0 Original Alignment GGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGATTCTACAGTCGAGATTATGAGTACAACAGATACAGAGACTATTACAGACAATACAACCGGGAT tgatcttaaatgcctataaaggattgagcccatgtcctttctccttccagGGCTACCGCAATTTCTATGATCGATACAAGGGTGACTATGAACGATTCTATAGTCGGGATTACAAATACAATAGATATAGGGGATATTATAGAGAATACAACCAAGATgtgagtttatgggatagggagcagaagaaagggatagggagcagaagaaa Alignment from CESAR GGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGATTCTACAGTCGAGATTATGAGTACAACAGATACAGAGACTATTACAGACAATACAACCGGGAT tgatcttaaatgcctataaaggattgagcccatgtcctttctccttccagGGCTACCGCAATTTCTATGATCGATACAAGGGTGACTATGAACGATTCTATAGTCGGGATTACAAATACAATAGATATAGGGGATATTATAGAGAATACAACCAAGATgtgagtttatgggatagggagcagaagaaagggatagggagcagaagaaa Alignment from Spaln_aa2Genome GGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGATTCTACAGTCGAGATTATGAGTACAACAGATACAGAGACTATTACAGACAATACAACCGGGAT tgatcttaaatgcctataaaggattgagcccatgtcctttctccttccagGGCTACCGCAATTTCTATGATCGATACAAGGGTGACTATGAACGATTCTATAGTCGGGATTACAAATACAATAGATATAGGGGATATTATAGAGAATACAACCAAGATgtgagtttatgggatagggagcagaagaaagggatagggagcagaagaaa Alignment from Spaln_nt2Genome GGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGATTCTACAGTCGAGATTATGAGTACAACAGATACAGAGACTATTACAGACAATACAACCGGGAT tgatcttaaatgcctataaaggattgagcccatgtcctttctccttccagGGCTACCGCAATTTCTATGATCGATACAAGGGTGACTATGAACGATTCTATAGTCGGGATTACAAATACAATAGATATAGGGGATATTATAGAGAATACAACCAAGATgtgagtttatgggatagggagcagaagaaagggatagggagcagaagaaa Alignment from Pairagon GGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGATTCTACAGTCGAGATTATGAGTACAACAGATACAGAGACTATTACAGACAATACAACCGGGAT tgatcttaaatgcctataaaggattgagcccatgtcctttctccttccagGGCTACCGCAATTTCTATGATCGATACAAGGGTGACTATGAACGATTCTATAGTCGGGATTACAAATACAATAGATATAGGGGATATTATAGAGAATACAACCAAGATgtgagtttatgggatagggagcagaagaaagggatagggagcagaagaaa Alignment from Exonerate_protein2genome GGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGATTCTACAGTCGAGATTATGAGTACAACAGATACAGAGACTATTACAGACAATACAACCGGGAT tgatcttaaatgcctataaaggattgagcccatgtcctttctccttccagGGCTACCGCAATTTCTATGATCGATACAAGGGTGACTATGAACGATTCTATAGTCGGGATTACAAATACAATAGATATAGGGGATATTATAGAGAATACAACCAAGATgtgagtttatgggatagggagcagaagaaagggatagggagcagaagaaa Alignment from Exonerate_coding2genome GGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGATTCTACAGTCGAGATTATGAGTACAACAGATACAGAGACTATTACAGACAATACAACCGGGAT tgatcttaaatgcctataaaggattgagcccatgtcctttctccttccagGGCTACCGCAATTTCTATGATCGATACAAGGGTGACTATGAACGATTCTATAGTCGGGATTACAAATACAATAGATATAGGGGATATTATAGAGAATACAACCAAGATgtgagtttatgggatagggagcagaagaaagggatagggagcagaagaaa Alignment from GeneWise GGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGATTCTACAGTCGAGATTATGAGTACAACAGATACAGAGACTATTACAGACAATACAACCGGGAT tgatcttaaatgcctataaaggattgagcccatgtcctttctccttccagGGCTACCGCAATTTCTATGATCGATACAAGGGTGACTATGAACGATTCTATAGTCGGGATTACAAATACAATAGATATAGGGGATATTATAGAGAATACAACCAAGATgtgagtttatgggatagggagcagaagaaagggatagggagcagaagaaa #### Hoga1_ID8379_2 --> 2 - 1 Original Alignment gcTTCGTGGTCCAGGGTTCGACTGGAGAGTTTCCGTTCCTGACCAGCCTCGAGCGCCTGGAGGTGGTGAGCCGCGTGCGCCAGGCCATACCCAAGGACAAGTTCCTGATAGCCGGCTCTGGCTGCGAGt acacattttgcatttcattgtaacaggacctgacacttgtccctccccagggTATTTAGTCCAGGGTTCTATTGGAGAGTTTCTCTTCCTAACTAGCCTTGAGCGCATAGATGCGGTAAGCCAAGTTCGTCAGGCAATACCTAAAGACAAGTCTCTGATAGCTGGCTCAAGCTGCAAGtgtagggattggggggcagctgctggctgacaggaccaaattcatgctgta Alignment from CESAR gcTTCGTGGTCCAGGGTTCGACTGGAGAGTTTCCGTTCCTGACCAGCCTCGAGCGCCTGGAGGTGGTGAGCCGCGTGCGCCAGGCCATACCCAAGGACAAGTTCCTGATAGCCGGCTCTGGCTGCGAGt acacattttgcatttcattgtaacaggacctgacacttgtccctccccagggTATTTAGTCCAGGGTTCTATTGGAGAGTTTCTCTTCCTAACTAGCCTTGAGCGCATAGATGCGGTAAGCCAAGTTCGTCAGGCAATACCTAAAGACAAGTCTCTGATAGCTGGCTCAAGCTGCAAGtgtagggattggggggcagctgctggctgacaggaccaaattcatgctgta Alignment from Spaln_aa2Genome GCTTCGTGGTCCAGGGTTCGACTGGAGAGTTTCCGTTCCTGACCAGCCTCGAGCGCCTGGAGGTGGTGAGCCGCGTGCGCCAGGCCATACCCAAGGACAAGTTCCTGATAGCCGGCTCTGGCTGCGAGT acacattttgcatttcattgtaacaggacctgacacttgtccctccccagGGTATTTAGTCCAGGGTTCTATTGGAGAGTTTCTCTTCCTAACTAGCCTTGAGCGCATAGATGCGGTAAGCCAAGTTCGTCAGGCAATACCTAAAGACAAGTCTCTGATAGCTGGCTCAAGCTGCAAGTgtagggattggggggcagctgctggctgacaggaccaaattcatgctgta Alignment from Spaln_nt2Genome GCTTCGTGGTCCAGGGTTCGACTGGAGAGTTTCCGTTCCTGACCAGCCTCGAGCGCCTGGAGGTGGTGAGCCGCGTGCGCCAGGCCATACCCAAGGACAAGTTCCTGATAGCCGGCTCTGGCTGCGAGT acacattttgcatttcattgtaacaggacctgacacttgtccctccccagGGTATTTAGTCCAGGGTTCTATTGGAGAGTTTCTCTTCCTAACTAGCCTTGAGCGCATAGATGCGGTAAGCCAAGTTCGTCAGGCAATACCTAAAGACAAGTCTCTGATAGCTGGCTCAAGCTGCAAGTgtagggattggggggcagctgctggctgacaggaccaaattcatgctgta Alignment from Pairagon GCTTCGTGGTCCAGGGTTCGACTGGAGAGTTTCCGTTCCTGACCAGCCTCGAGCGCCTGGAGGTGGTGAGCCGCGTGCGCCAGGCCATACCCAAGGACAAGTTCCTGATAGCCGGCTCTGGCTGCGAGT acacattttgcatttcattgtaacaggacctgacacttgtccctccccagGGTATTTAGTCCAGGGTTCTATTGGAGAGTTTCTCTTCCTAACTAGCCTTGAGCGCATAGATGCGGTAAGCCAAGTTCGTCAGGCAATACCTAAAGACAAGTCTCTGATAGCTGGCTCAAGCTGCAAGTgtagggattggggggcagctgctggctgacaggaccaaattcatgctgta Alignment from Exonerate_protein2genome GCTTCGTGGTCCAGGGTTCGACTGGAGAGTTTCCGTTCCTGACCAGCCTCGAGCGCCTGGAGGTGGTGAGCCGCGTGCGCCAGGCCATACCCAAGGACAAGTTCCTGATAGCCGGCTCTGGCTGCGAGT acacattttgcatttcattgtaacaggacctgacacttgtccctccccagGGTATTTAGTCCAGGGTTCTATTGGAGAGTTTCTCTTCCTAACTAGCCTTGAGCGCATAGATGCGGTAAGCCAAGTTCGTCAGGCAATACCTAAAGACAAGTCTCTGATAGCTGGCTCAAGCTGCAAGTgtagggattggggggcagctgctggctgacaggaccaaattcatgctgta Alignment from Exonerate_coding2genome acacattttgcatttcattgtaacaggacctgacacttgtccctccccagggtatttagtccagggttctattggagagtttctcttcctaactagccttgagcgcatagatgcggtaagccaagttcgtcaggcaatacctaaagacaagtctctgatagctggctcaagctgcaagtgtagggattggggggcagctgctggctgacaggaccaaattcatgctgta Alignment from GeneWise GCTTCGTGGTCCAGGGTTCGACTGGAGAGTTTCCGTTCCTGACCAGCCTCGAGCGCCTGGAGGTGGTGAGCCGCGTGCGCCAGGCCATACCCAAGGACAAGTTCCTGATAGCCGGCTCTGGCTGCGAGT acacattttgcatttcattgtaacaggacctgacacttgtccctccccagGGTATTTAGTCCAGGGTTCTATTGGAGAGTTTCTCTTCCTAACTAGCCTTGAGCGCATAGATGCGGTAAGCCAAGTTCGTCAGGCAATACCTAAAGACAAGTCTCTGATAGCTGGCTCAAGCTGCAAGTgtagggattggggggcagctgctggctgacaggaccaaattcatgctgta #### Hoga1_ID8383_6 --> 2 - 0 Original Alignment gaGCTGTTGGGGGCATATGTGGCTTGGCCAATGTCTTGGGGGCCCAGGTGTGCCAGCTGGAGAGACTCTGCCTCACAGGGCAGTGGGAAGCTGCCCAGGAACTACAGCACCGTCTCATCGAGCCCAACACTGCG gagaactgagtactacatggcctatgccattaaaaaaaaaatctgtctaggaGCTGTGGGTGGTATTAGTGGGCTGGCGAATGTTTTAGGGGCTGAGGTGTGT---CTGCAGAGATTTTGTCTTACAGGGCAGTGGGAGGCTTCCCAAGAATTGCAGCGTCGGCTCATTGAGCCAAACACTGCAgtgagtttcccaagggctctactgacaattccctgttcaacatctctacc Alignment from CESAR gaGCTGTTGGGGGCATATGTGGCTTGGCCAATGTCTTGGGGGCCCAGGTGTGCCAGCTGGAGAGACTCTGCCTCACAGGGCAGTGGGAAGCTGCCCAGGAACTACAGCACCGTCTCATCGAGCCCAACACTGCG gagaactgagtactacatggcctatgccattaaaaaaaaaatctgtctaggaGCTGTGGGTGGTATTAGTGGGCTGGCGAATGTTTTAGGGGCTGAGGTGTGT---CTGCAGAGATTTTGTCTTACAGGGCAGTGGGAGGCTTCCCAAGAATTGCAGCGTCGGCTCATTGAGCCAAACACTGCAgtgagtttcccaagggctctactgacaattccctgttcaacatctctacc Alignment from Spaln_aa2Genome GAGCTGTTGGGGGCATATGTGGCTTGGCCAATGTCTTGGGGGCCCAGGTGTGCCAGCTGGAGAGACTCTGCCTCACAGGGCAGTGGGAAGCTGCCCAGGAACTACAGCACCGTCTCATCGAGCCCAACACTGCG gagaactgagtactacatggcctatgccattaaaaaaaaaatctgtctagGAGCTGTGGGTGGTATTAGTGGGCTGGCGAATGTTTTAGGGGCTGAGGTGTGT---CTGCAGAGATTTTGTCTTACAGGGCAGTGGGAGGCTTCCCAAGAATTGCAGCGTCGGCTCATTGAGCCAAACACTGCAgtgagtttcccaagggctctactgacaattccctgttcaacatctctacc Alignment from Spaln_nt2Genome GAGCTGTTGGGGGCATATGTGGCTTGGCCAATGTCTTGGGGGCCCAGGTGTGCCAGCTGGAGAGACTCTGCCTCACAGGGCAGTGGGAAGCTGCCCAGGAACTACAGCACCGTCTCATCGAGCCCAACACTGCG gagaactgagtactacatggcctatgccattaaaaaaaaaatctgtctagGAGCTGTGGGTGGTATTAGTGGGCTGGCGAATGTTTTAGGGGCTGAGGTGTG---TCTGCAGAGATTTTGTCTTACAGGGCAGTGGGAGGCTTCCCAAGAATTGCAGCGTCGGCTCATTGAGCCAAACACTGCAgtgagtttcccaagggctctactgacaattccctgttcaacatctctacc Alignment from Pairagon GAGCTGTTGGGGGCATATGTGGCTTGGCCAATGTCTTGGGGGCCCAGGTGTGCCAGCTGGAGAGACTCTGCCTCACAGGGCAGTGGGAAGCTGCCCAGGAACTACAGCACCGTCTCATCGAGCCCAACACTGCG gagaactgagtactacatggcctatgccattaaaaaaaaaatctgtctagGAGCTGTGGGTGGTATTAGTGGGCTGGCGAATGTTTTAGGGGCTGAGGTGTGT---CTGCAGAGATTTTGTCTTACAGGGCAGTGGGAGGCTTCCCAAGAATTGCAGCGTCGGCTCATTGAGCCAAACACTGCAgtgagtttcccaagggctctactgacaattccctgttcaacatctctacc Alignment from Exonerate_protein2genome GAGCTGTTGGGGGCATATGTGGCTTGGCCAATGTCTTGGGGGCCCAGGTGTGCCAGCTGGAGAGACTCTGCCTCACAGGGCAGTGGGAAGCTGCCCAGGAACTACAGCACCGTCTCATCGAGCCCAACACTGCG gagaactgagtactacatggcctatgccattaaaaaaaaaatctgtctagGAGCTGTGGGTGGTATTAGTGGGCTGGCGAATGTTTTAGGGGCTGAGGTGTGT---CTGCAGAGATTTTGTCTTACAGGGCAGTGGGAGGCTTCCCAAGAATTGCAGCGTCGGCTCATTGAGCCAAACACTGCAgtgagtttcccaagggctctactgacaattccctgttcaacatctctacc Alignment from Exonerate_coding2genome GAGCTGTTGGGGGCATATGTGGCTTGGCCAATGTCTTGGGGGCCCAGGTGTGCCAGCTGGAGAGACTCTGCCTCACAGGGCAGTGGGAAGCTGCCCAGGAACTACAGCACCGTCTCATCGAGCCCAACACTGCG gagaactgagtactacatggcctatgccattaaaaaaaaaatctgtctagGAGCTGTGGGTGGTATTAGTGGGCTGGCGAATGTTTTAGGGGCTGAGGTGTGT---CTGCAGAGATTTTGTCTTACAGGGCAGTGGGAGGCTTCCCAAGAATTGCAGCGTCGGCTCATTGAGCCAAACACTGCAgtgagtttcccaagggctctactgacaattccctgttcaacatctctacc Alignment from GeneWise GAGCTGTTGGGGGCATATGTGGCTTGGCCAATGTCTTGGGGGCCCAGGTGTGCCAGCTGGAGAGACTCTGCCTCACAGGGCAGTGGGAAGCTGCCCAGGAACTACAGCACCGTCTCATCGAGCCCAACACTGCG gagaactgagtactacatggcctatgccattaaaaaaaaaatctgtctagGAGCTGTGGGTGGTATTAGTGGGCTGGCGAATGTTTTAGGGGCTGAGGTGTGT---CTGCAGAGATTTTGTCTTACAGGGCAGTGGGAGGCTTCCCAAGAATTGCAGCGTCGGCTCATTGAGCCAAACACTGCAgtgagtttcccaagggctctactgacaattccctgttcaacatctctacc #### Hps1_ID8611_17 --> 0 - 2 Original Alignment GGATACAAA---CTGCAGATGATTGAGGTGCCTGTCCTCTCGGATGACTCCGTCCCCATTGGCGTGCTGGGAGGTGACTACTACag accataatttttgtaggcccagcctctatatctactgcttttgttttcagGGATACATGAAAGTGCAGATCATTGACGTTCCAGTCCTCTCAGATGACTCCATACCCGCTGGGGTTTTGGGAGGAGATTACTATaagtcagttccctggagccaccccttggcagaagtaacttgtcattcagtct Alignment from CESAR GGATAC---AAACTGCAGATGATTGAGGTGCCTGTCCTCTCGGATGACTCCGTCCCCATTGGCGTGCTGGGAGGTGACTACTACag accataatttttgtaggcccagcctctatatctactgcttttgttttcagGGATACATGAAAGTGCAGATCATTGACGTTCCAGTCCTCTCAGATGACTCCATACCCGCTGGGGTTTTGGGAGGAGATTACTATaagtcagttccctggagccaccccttggcagaagtaacttgtcattcttatt Alignment from Spaln_aa2Genome GGATAC---AAACTGCAGATGATTGAGGTGCCTGTCCTCTCGGATGACTCCGTCCCCATTGGCGTGCTGGGAGGTGACTACTACAG accataatttttgtaggcccagcctctatatctactgcttttgttttcagGGATACATGAAAGTGCAGATCATTGACGTTCCAGTCCTCTCAGATGACTCCATACCCGCTGGGGTTTTGGGAGGAGATTACTATAAgtcagttccctggagccaccccttggcagaagtaacttgtcattcagtct Alignment from Spaln_nt2Genome GGATACA---AACTGCAGATGATTGAGGTGCCTGTCCTCTCGGATGACTCCGTCCCCATTGGCGTGCTGGGAGGTGACTACTACAG accataatttttgtaggcccagcctctatatctactgcttttgttttcagGGATACATGAAAGTGCAGATCATTGACGTTCCAGTCCTCTCAGATGACTCCATACCCGCTGGGGTTTTGGGAGGAGATTACTATAAgtcagttccctggagccaccccttggcagaagtaacttgtcattcagtct Alignment from Pairagon GGATAC---AAACTGCAGATGATTGAGGTGCCTGTCCTCTCGGATGACTCCGTCCCCATTGGCGTGCTGGGAGGTGACTACTACAG accataatttttgtaggcccagcctctatatctactgcttttgttttcagGGATACATGAAAGTGCAGATCATTGACGTTCCAGTCCTCTCAGATGACTCCATACCCGCTGGGGTTTTGGGAGGAGATTACTATAAgtcagttccctggagccaccccttggcagaagtaacttgtcattcagtct Alignment from Exonerate_protein2genome GGATAC---AAACTGCAGATGATTGAGGTGCCTGTCCTCTCGGATGACTCCGTCCCCATTGGCGTGCTGGGAGGTGACTACTACAG accataatttttgtaggcccagcctctatatctactgcttttgttttcagGGATACATGAAAGTGCAGATCATTGACGTTCCAGTCCTCTCAGATGACTCCATACCCGCTGGGGTTTTGGGAGGAGATTACTATAAgtcagttccctggagccaccccttggcagaagtaacttgtcattcagtct Alignment from Exonerate_coding2genome accataatttttgtaggcccagcctctatatctactgcttttgttttcagggatacatgaaagtgcagatcattgacgttccagtcctctcagatgactccatacccgctggggttttgggaggagattactataagtcagttccctggagccaccccttggcagaagtaacttgtcattcagtct Alignment from GeneWise GGATAC---AAACTGCAGATGATTGAGGTGCCTGTCCTCTCGGATGACTCCGTCCCCATTGGCGTGCTGGGAGGTGACTACTACAG accataatttttgtaggcccagcctctatatctactgcttttgttttcagGGATACATGAAAGTGCAGATCATTGACGTTCCAGTCCTCTCAGATGACTCCATACCCGCTGGGGTTTTGGGAGGAGATTACTATAAgtcagttccctggagccaccccttggcagaagtaacttgtcattcagtct #### Hps1_ID8613_15 --> 1 - 0 Original Alignment cTACCTGGAGGATTTCCCAGGCCTGGTCCACTTCATCTATGTGGACCGTACAACCGGGCAGATGGTGGCCCCCTCTCTCAGCCCCAACGAAAAGATGTCTTCCGAGTTGGGCAAGGGGCCCCTGGCTGCCTTTGTCAAAGCCAAG gatcttgatagaagtagtatctcaaaattccctttcgtttgcttccctagcTACATAGAAGATTTCCCTAGCCTGGTCCACTCTGTTTATGTTGACCGAACCACCGGTCAGATTGTGGCACCGTCCCTCACTCCTAATGAGAGGATGTCTCCTGAGCTGGGCAAGGGGCCATTGGCTACTTTTGTGAAAACTGAAgtactgctgggcctgggacttttgcacaaaacaatatgaacacagcatct Alignment from CESAR cTACCTGGAGGATTTCCCAGGCCTGGTCCACTTCATCTATGTGGACCGTACAACCGGGCAGATGGTGGCCCCCTCTCTCAGCCCCAACGAAAAGATGTCTTCCGAGTTGGGCAAGGGGCCCCTGGCTGCCTTTGTCAAAGCCAAG gatcttgatagaagtagtatctcaaaattccctttcgtttgcttccctagcTACATAGAAGATTTCCCTAGCCTGGTCCACTCTGTTTATGTTGACCGAACCACCGGTCAGATTGTGGCACCGTCCCTCACTCCTAATGAGAGGATGTCTCCTGAGCTGGGCAAGGGGCCATTGGCTACTTTTGTGAAAACTGAAgtactgctgggcctgggacttttgcacaaaacaatatgaacacagcatct Alignment from Spaln_aa2Genome CTACCTGGAGGATTTCCCAGGCCTGGTCCACTTCATCTATGTGGACCGTACAACCGGGCAGATGGTGGCCCCCTCTCTCAGCCCCAACGAAAAGATGTCTTCCGAGTTGGGCAAGGGGCCCCTGGCTGCCTTTGTCAAAGCCAAG gatcttgatagaagtagtatctcaaaattccctttcgtttgcttccctagCTACATAGAAGATTTCCCTAGCCTGGTCCACTCTGTTTATGTTGACCGAACCACCGGTCAGATTGTGGCACCGTCCCTCACTCCTAATGAGAGGATGTCTCCTGAGCTGGGCAAGGGGCCATTGGCTACTTTTGTGAAAACTGAAgtactgctgggcctgggacttttgcacaaaacaatatgaacacagcatct Alignment from Spaln_nt2Genome CTACCTGGAGGATTTCCCAGGCCTGGTCCACTTCATCTATGTGGACCGTACAACCGGGCAGATGGTGGCCCCCTCTCTCAGCCCCAACGAAAAGATGTCTTCCGAGTTGGGCAAGGGGCCCCTGGCTGCCTTTGTCAAAGCCAAG gatcttgatagaagtagtatctcaaaattccctttcgtttgcttccctagCTACATAGAAGATTTCCCTAGCCTGGTCCACTCTGTTTATGTTGACCGAACCACCGGTCAGATTGTGGCACCGTCCCTCACTCCTAATGAGAGGATGTCTCCTGAGCTGGGCAAGGGGCCATTGGCTACTTTTGTGAAAACTGAAgtactgctgggcctgggacttttgcacaaaacaatatgaacacagcatct Alignment from Pairagon CTACCTGGAGGATTTCCCAGGCCTGGTCCACTTCATCTATGTGGACCGTACAACCGGGCAGATGGTGGCCCCCTCTCTCAGCCCCAACGAAAAGATGTCTTCCGAGTTGGGCAAGGGGCCCCTGGCTGCCTTTGTCAAAGCCAAG gatcttgatagaagtagtatctcaaaattccctttcgtttgcttccctagCTACATAGAAGATTTCCCTAGCCTGGTCCACTCTGTTTATGTTGACCGAACCACCGGTCAGATTGTGGCACCGTCCCTCACTCCTAATGAGAGGATGTCTCCTGAGCTGGGCAAGGGGCCATTGGCTACTTTTGTGAAAACTGAAgtactgctgggcctgggacttttgcacaaaacaatatgaacacagcatct Alignment from Exonerate_protein2genome CTACCTGGAGGATTTCCCAGGCCTGGTCCACTTCATCTATGTGGACCGTACAACCGGGCAGATGGTGGCCCCCTCTCTCAGCCCCAACGAAAAGATGTCTTCCGAGTTGGGCAAGGGGCCCCTGGCTGCCTTTGTCAAAGCCAAG gatcttgatagaagtagtatctcaaaattccctttcgtttgcttccctagCTACATAGAAGATTTCCCTAGCCTGGTCCACTCTGTTTATGTTGACCGAACCACCGGTCAGATTGTGGCACCGTCCCTCACTCCTAATGAGAGGATGTCTCCTGAGCTGGGCAAGGGGCCATTGGCTACTTTTGTGAAAACTGAAgtactgctgggcctgggacttttgcacaaaacaatatgaacacagcatct Alignment from Exonerate_coding2genome gatcttgatagaagtagtatctcaaaattccctttcgtttgcttccctagctacatagaagatttccctagcctggtccactctgtttatgttgaccgaaccaccggtcagattgtggcaccgtccctcactcctaatgagaggatgtctcctgagctgggcaaggggccattggctacttttgtgaaaactgaagtactgctgggcctgggacttttgcacaaaacaatatgaacacagcatct Alignment from GeneWise CTACCTGGAGGATTTCCCAGGCCTGGTCCACTTCATCTATGTGGACCGTACAACCGGGCAGATGGTGGCCCCCTCTCTCAGCCCCAACGAAAAGATGTCTTCCGAGTTGGGCAAGGGGCCCCTGGCTGCCTTTGTCAAAGCCAAG gatcttgatagaagtagtatctcaaaattccctttcgtttgcttccctagCTACATAGAAGATTTCCCTAGCCTGGTCCACTCTGTTTATGTTGACCGAACCACCGGTCAGATTGTGGCACCGTCCCTCACTCCTAATGAGAGGATGTCTCCTGAGCTGGGCAAGGGGCCATTGGCTACTTTTGTGAAAACTGAAgtactgctgggcctgggacttttgcacaaaacaatatgaacacagcatct #### Hps1_ID8616_12 --> 0 - 2 Original Alignment AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGATCGTCCTGGga tttgtggggaacactcccctatgcacttcaacctgagctctctgctgcagAATGCCTGGCTGGAATTTAAGAGTAAAGTC---TCTAAGGGTCAGCAAGGA------CGGgagtaagtctattatgtcaaaaattatatacagtcattggtgttccttgttt Alignment from CESAR AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGATCGTCCTGGga tttgtggggaacactcccctatgcacttcaacctgagctctctgctgcagAATGCCTGGCTGGAATTTAAGAGTAAAGTC---TCTAAGGGTCAGCAAGGA------CGGgagtaagtctattatgtcaaaaattatatacagtcattggtgttccttgttt Alignment from Spaln_aa2Genome AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGATCGTCCTGGGA tttgtggggaacactcccctatgcacttcaacctgagctctctgctgcagAATGCCTGGCTGGAATTTAAGAGTAAAGTC---TCTAAGGGTCAGCAAGGA------CGGGAgtaagtctattatgtcaaaaattatatacagtcattggtgttccttgttt Alignment from Spaln_nt2Genome AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGATCGTCCTGGGA tttgtggggaacactcccctatgcacttcaacctgagctctctgctgcagAATGCCTGGCTGGAATTTAAGAGTAAAG---TCTCTAAGGGTCAGCAAGGA------CGGGAgtaagtctattatgtcaaaaattatatacagtcattggtgttccttgttt Alignment from Pairagon AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGATCGTCCTGGGA tttgtggggaacactcccctatgcacttcaacctgagctctctgctgcagAATGCCTGGCTGGAATTTAAGAGTAAAG---TCTCTAAGGGTCAGCAAGGA------CGGGAgtaagtctattatgtcaaaaattatatacagtcattggtgttccttgttt Alignment from Exonerate_protein2genome AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGAT tttgtggggaacactcccctatgcacttcaacctgagctctctgctgcagAATGCCTGGCTGGAATTTAAGAGTAAAGTC---TCTAAGGGTCAGCAAGGACgggagtaagtctattatgtcaaaaattatatacagtcattggtgttccttgttt Alignment from Exonerate_coding2genome tttgtggggaacactcccctatgcacttcaacctgagctctctgctgcagaatgcctggctggaatttaagagtaaagtctctaagggtcagcaaggacgggagtaagtctattatgtcaaaaattatatacagtcattggtgttccttgttt Alignment from GeneWise AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGATCGTC tttgtggggaacactcccctatgcacttcaacctgagctctctgctgcagAATGCCTGGCTGGAATTTAAGAGTAAAGTC---TCTAAGGGTCAGCAAGGACGGGAgtaagtctattatgtcaaaaattatatacagtcattggtgttccttgttt #### Hps1_ID8622_6 --> 1 - 0 Original Alignment cCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGC---CCTCAG tcccccctcacaattttagttgtattctcttgtatgtccctcatctgtagcCAAGGTGCAAGCACTCTATGTCCAGCAGATTTTCTT---------CTCCTAGTTCATGATCCACAGCCTTCACCGGCCATGACAGAGGAGGAGGGGGAGCAAGAAGATGGTCACAGCAGCCCACAGgtgagggcaaaccccagaattgcgattgactaattatcagaaggagctgg Alignment from CESAR cCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGC---GACAGCCCTCAG tcccccctcacaattttagttgtattctcttgtatgtccctcatctgtagcCAAGGTGCAAGCACTCTATGTCCAGCAGATTTTCTT---------CTCCTAGTTCATGATCCACAGCCTTCACCGGCCATGACAGAGGAGGAGGGGGAGCAAGAAGATGGTCACAGCAGCCCACAGgtgagggcaaaccccagaattgcgattgactaattatcagaaggagctgg Alignment from Spaln_aa2Genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGAC---AGCCCTCAG tcccccctcacaattttagttgtattctcttgtatgtccctcatctgtagCCAAGGTGCAAGCACTCTATGTCCAGCAGATTTTCTT---------CTCCTAGTTCATGATCCACAGCCTTCACCGGCCATGACAGAGGAGGAGGGGGAGCAAGAAGATGGTCACAGCAGCCCACAGgtgagggcaaaccccagaattgcgattgactaattatcagaaggagctgg Alignment from Spaln_nt2Genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCC-CTCAGAG tcccccctcacaattttagttgtattctcttgtatgtccctcatctgtagCCAAGGTGCAAGCACTCTATGTCCAGCAGATTTTC---------TTCTCCTAGTTCATGATCCACAGCCTTCACCGGCCATGACAGAGGAGGAGGGGGAGCAAGAAGATGGTCACAGCAGCCCACAGgtgagggcaaaccccagaattgcgattgactaattatcagaaggagctgg Alignment from Pairagon CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAG---CGACAGCCCTCAG tcccccctcacaattttagttgtattctcttgtatgtccctcatctgtagCCAAGGTGCAAGCACTCTATGTCCAGCAGATTTTC---------TTCTCCTAGTTCATGATCCACAGCCTTCACCGGCCATGACAGAGGAGGAGGGGGAGCAAGAAGATGGTCACAGCAGCCCACAGgtgagggcaaaccccagaattgcgattgactaattatcagaaggagctgg Alignment from Exonerate_protein2genome tcccccctcacaattttagttgtattctcttgtatgtccctcatctgtagccaaggtgcaagcactctatgtccagcagattttcttctcctagttcatgatccacagccttcaccggccatgacagaggaggagggggagcaagaagatggtcacagcagcccacaggtgagggcaaaccccagaattgcgattgactaattatcagaaggagctgg Alignment from Exonerate_coding2genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGC tcccccctcacaattttagttgtattctcttgtatgtccctcatctgtagCCAAGGTGCAAGCACTCTATGTCCAGCAGATTTTCTT---------CTCCTAGTTCATGATCCACAGCCTTCACCGGCCATGACAGAGGAGGAGGGGGAGCAAGAAGATGGTCACAGCagcccacaggtgagggcaaaccccagaattgcgattgactaattatcagaaggagctgg Alignment from GeneWise CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGC---GACAGCCCTCAG tcccccctcacaattttagttgtattctcttgtatgtccctcatctgtagCCAAGGTGCAAGCACTCTATGTCCAGCAGATTTTCTT---------CTCCTAGTTCATGATCCACAGCCTTCACCGGCCATGACAGAGGAGGAGGGGGAGCAAGAAGATGGTCACAGCAGCCCACAGgtgagggcaaaccccagaattgcgattgactaattatcagaaggagctgg #### Hpse2_ID8672_8 --> 0 - 2 Original Alignment GTGGTCAACACATACACTCCAGGAAAGAAGATTTGGCTGGAAGGCGTGGTGACCACCTCAGCTGGAGGCACAAACAATCTGTCGGATTCCTACGCTGCAGGATTCtt ggtgtggtgagttagaaaatgacctgtccctctgtggttcattcatacagGTTGTTAACACATACACACCAGGAAAGAAAATTTGGTTAGAGAGTGTGGTAACCACTTCAGCTGGGGGCACCAACAACTTGTCAGATCCCTATGCTGCAGGATTCatgtgagtgatcaatggttaggatcagttaatgtgccaatacagcaagatag Alignment from CESAR GTGGTCAACACATACACTCCAGGAAAGAAGATTTGGCTGGAAGGCGTGGTGACCACCTCAGCTGGAGGCACAAACAATCTGTCGGATTCCTACGCTGCAGGATTCtt ggtgtggtgagttagaaaatgacctgtccctctgtggttcattcatacagGTTGTTAACACATACACACCAGGAAAGAAAATTTGGTTAGAGAGTGTGGTAACCACTTCAGCTGGGGGCACCAACAACTTGTCAGATCCCTATGCTGCAGGATTCatgtgagtgatcaatggttaggatcagttaatgtgccaatacagcaagatag Alignment from Spaln_aa2Genome GTGGTCAACACATACACTCCAGGAAAGAAGATTTGGCTGGAAGGCGTGGTGACCACCTCAGCTGGAGGCACAAACAATCTGTCGGATTCCTACGCTGCAGGATTCTT ggtgtggtgagttagaaaatgacctgtccctctgtggttcattcatacagGTTGTTAACACATACACACCAGGAAAGAAAATTTGGTTAGAGAGTGTGGTAACCACTTCAGCTGGGGGCACCAACAACTTGTCAGATCCCTATGCTGCAGGATTCATgtgagtgatcaatggttaggatcagttaatgtgccaatacagcaagatag Alignment from Spaln_nt2Genome GTGGTCAACACATACACTCCAGGAAAGAAGATTTGGCTGGAAGGCGTGGTGACCACCTCAGCTGGAGGCACAAACAATCTGTCGGATTCCTACGCTGCAGGATTCTT ggtgtggtgagttagaaaatgacctgtccctctgtggttcattcatacagGTTGTTAACACATACACACCAGGAAAGAAAATTTGGTTAGAGAGTGTGGTAACCACTTCAGCTGGGGGCACCAACAACTTGTCAGATCCCTATGCTGCAGGATTCATgtgagtgatcaatggttaggatcagttaatgtgccaatacagcaagatag Alignment from Pairagon GTGGTCAACACATACACTCCAGGAAAGAAGATTTGGCTGGAAGGCGTGGTGACCACCTCAGCTGGAGGCACAAACAATCTGTCGGATTCCTACGCTGCAGGATTCTT ggtgtggtgagttagaaaatgacctgtccctctgtggttcattcatacagGTTGTTAACACATACACACCAGGAAAGAAAATTTGGTTAGAGAGTGTGGTAACCACTTCAGCTGGGGGCACCAACAACTTGTCAGATCCCTATGCTGCAGGATTCATgtgagtgatcaatggttaggatcagttaatgtgccaatacagcaagatag Alignment from Exonerate_protein2genome GTGGTCAACACATACACTCCAGGAAAGAAGATTTGGCTGGAAGGCGTGGTGACCACCTCAGCTGGAGGCACAAACAATCTGTCGGATTCCTACGCTGCAGGATTCTT ggtgtggtgagttagaaaatgacctgtccctctgtggttcattcatacagGTTGTTAACACATACACACCAGGAAAGAAAATTTGGTTAGAGAGTGTGGTAACCACTTCAGCTGGGGGCACCAACAACTTGTCAGATCCCTATGCTGCAGGATTCATgtgagtgatcaatggttaggatcagttaatgtgccaatacagcaagatag Alignment from Exonerate_coding2genome GTGGTCAACACATACACTCCAGGAAAGAAGATTTGGCTGGAAGGCGTGGTGACCACCTCAGCTGGAGGCACAAACAATCTGTCGGATTCCTACGCTGCAGGATTCTT ggtgtggtgagttagaaaatgacctgtccctctgtggttcattcatacagGTTGTTAACACATACACACCAGGAAAGAAAATTTGGTTAGAGAGTGTGGTAACCACTTCAGCTGGGGGCACCAACAACTTGTCAGATCCCTATGCTGCAGGATTCATgtgagtgatcaatggttaggatcagttaatgtgccaatacagcaagatag Alignment from GeneWise GTGGTCAACACATACACTCCAGGAAAGAAGATTTGGCTGGAAGGCGTGGTGACCACCTCAGCTGGAGGCACAAACAATCTGTCGGATTCCTACGCTGCAGGATTCTT ggtgtggtgagttagaaaatgacctgtccctctgtggttcattcatacagGTTGTTAACACATACACACCAGGAAAGAAAATTTGGTTAGAGAGTGTGGTAACCACTTCAGCTGGGGGCACCAACAACTTGTCAGATCCCTATGCTGCAGGATTCATgtgagtgatcaatggttaggatcagttaatgtgccaatacagcaagatag #### Hpse2_ID8673_7 --> 1 - 0 Original Alignment tTGCTACATTGATGGCCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTCGTCTGTTAGATACACTCTCTGACCAGATTAGGAAAATTCAGAAA aaatctcctaatgatcaaaagtaatgtgccactcattttctttctggcagtTGCTATATTGATGGGCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTTGTCTCTTAGATACACTCTCCGACCAGATCAGGAAGATACAGAGAgtaggtaaacattattgtgaggtcttcagtacagtacagagctcaaagct Alignment from CESAR tTGCTACATTGATGGCCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTCGTCTGTTAGATACACTCTCTGACCAGATTAGGAAAATTCAGAAA aaatctcctaatgatcaaaagtaatgtgccactcattttctttctggcagtTGCTATATTGATGGGCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTTGTCTCTTAGATACACTCTCCGACCAGATCAGGAAGATACAGAGAgtaggtaaacattattgtgaggtcttcagtacagtacagagctcaaagct Alignment from Spaln_aa2Genome TTGCTACATTGATGGCCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTCGTCTGTTAGATACACTCTCTGACCAGATTAGGAAAATTCAGAAA aaatctcctaatgatcaaaagtaatgtgccactcattttctttctggcagTTGCTATATTGATGGGCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTTGTCTCTTAGATACACTCTCCGACCAGATCAGGAAGATACAGAGAgtaggtaaacattattgtgaggtcttcagtacagtacagagctcaaagct Alignment from Spaln_nt2Genome TTGCTACATTGATGGCCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTCGTCTGTTAGATACACTCTCTGACCAGATTAGGAAAATTCAGAAA aaatctcctaatgatcaaaagtaatgtgccactcattttctttctggcagTTGCTATATTGATGGGCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTTGTCTCTTAGATACACTCTCCGACCAGATCAGGAAGATACAGAGAgtaggtaaacattattgtgaggtcttcagtacagtacagagctcaaagct Alignment from Pairagon TTGCTACATTGATGGCCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTCGTCTGTTAGATACACTCTCTGACCAGATTAGGAAAATTCAGAAA aaatctcctaatgatcaaaagtaatgtgccactcattttctttctggcagTTGCTATATTGATGGGCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTTGTCTCTTAGATACACTCTCCGACCAGATCAGGAAGATACAGAGAgtaggtaaacattattgtgaggtcttcagtacagtacagagctcaaagct Alignment from Exonerate_protein2genome TTGCTACATTGATGGCCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTCGTCTGTTAGATACACTCTCTGACCAGATTAGGAAAATTCAGAAA aaatctcctaatgatcaaaagtaatgtgccactcattttctttctggcagTTGCTATATTGATGGGCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTTGTCTCTTAGATACACTCTCCGACCAGATCAGGAAGATACAGAGAgtaggtaaacattattgtgaggtcttcagtacagtacagagctcaaagct Alignment from Exonerate_coding2genome TTGCTACATTGATGGCCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTCGTCTGTTAGATACACTCTCTGACCAGATTAGGAAAATTCAGAAA aaatctcctaatgatcaaaagtaatgtgccactcattttctttctggcagTTGCTATATTGATGGGCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTTGTCTCTTAGATACACTCTCCGACCAGATCAGGAAGATACAGAGAgtaggtaaacattattgtgaggtcttcagtacagtacagagctcaaagct Alignment from GeneWise TTGCTACATTGATGGCCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTCGTCTGTTAGATACACTCTCTGACCAGATTAGGAAAATTCAGAAA aaatctcctaatgatcaaaagtaatgtgccactcattttctttctggcagTTGCTATATTGATGGGCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTTGTCTCTTAGATACACTCTCCGACCAGATCAGGAAGATACAGAGAgtaggtaaacattattgtgaggtcttcagtacagtacagagctcaaagct #### Hpse2_ID8680_5 --> 2 - 2 Original Alignment agCCAAATAACTATCGGAGCATCCATGGCCGGGCAGTAAATGGTAGCCAGTTGGGAAAGGATTACATCCAGCTGAAGAGCCTGCTCCAACCCATCCGGGTTTACTCCAGAGCCAGCCTGTACGGCCCCAACATCGGACGGCCCAGGAAGAACGTCATTGCTCTCCTAGATgg tatgattgtaaatttagctttgtaagttggggttttatattgctgtgcagaaACAAATAATTACCGGAGCATCCATTGTCGCGCTGTTAATGGTAGCCAATTGGGTAAGGATTACATCCAGCTTAAGGGTCTGCTTCAACCCATCCGAGTTTACTCCAGGGCAAGCCTGTACGGCCCCAACATTGGACGGCCCAGGAAGAATGTCATTGCTCTCCTTGATgggtaaagactcaaccagaaagtagttgaatctctaaatggcaataaagggc Alignment from CESAR agCCAAATAACTATCGGAGCATCCATGGCCGGGCAGTAAATGGTAGCCAGTTGGGAAAGGATTACATCCAGCTGAAGAGCCTGCTCCAACCCATCCGGGTTTACTCCAGAGCCAGCCTGTACGGCCCCAACATCGGACGGCCCAGGAAGAACGTCATTGCTCTCCTAGATgg tatgattgtaaatttagctttgtaagttggggttttatattgctgtgcagaaACAAATAATTACCGGAGCATCCATTGTCGCGCTGTTAATGGTAGCCAATTGGGTAAGGATTACATCCAGCTTAAGGGTCTGCTTCAACCCATCCGAGTTTACTCCAGGGCAAGCCTGTACGGCCCCAACATTGGACGGCCCAGGAAGAATGTCATTGCTCTCCTTGATgggtaaagactcaaccagaaagtagttgaatctctaaatggcaataaagggc Alignment from Spaln_aa2Genome AGCCAAATAACTATCGGAGCATCCATGGCCGGGCAGTAAATGGTAGCCAGTTGGGAAAGGATTACATCCAGCTGAAGAGCCTGCTCCAACCCATCCGGGTTTACTCCAGAGCCAGCCTGTACGGCCCCAACATCGGACGGCCCAGGAAGAACGTCATTGCTCTCCTAGATGG tatgattgtaaatttagctttgtaagttggggttttatattgctgtgcagAAACAAATAATTACCGGAGCATCCATTGTCGCGCTGTTAATGGTAGCCAATTGGGTAAGGATTACATCCAGCTTAAGGGTCTGCTTCAACCCATCCGAGTTTACTCCAGGGCAAGCCTGTACGGCCCCAACATTGGACGGCCCAGGAAGAATGTCATTGCTCTCCTTGATGGgtaaagactcaaccagaaagtagttgaatctctaaatggcaataaagggc Alignment from Spaln_nt2Genome AGCCAAATAACTATCGGAGCATCCATGGCCGGGCAGTAAATGGTAGCCAGTTGGGAAAGGATTACATCCAGCTGAAGAGCCTGCTCCAACCCATCCGGGTTTACTCCAGAGCCAGCCTGTACGGCCCCAACATCGGACGGCCCAGGAAGAACGTCATTGCTCTCCTAGATGG tatgattgtaaatttagctttgtaagttggggttttatattgctgtgcagAAACAAATAATTACCGGAGCATCCATTGTCGCGCTGTTAATGGTAGCCAATTGGGTAAGGATTACATCCAGCTTAAGGGTCTGCTTCAACCCATCCGAGTTTACTCCAGGGCAAGCCTGTACGGCCCCAACATTGGACGGCCCAGGAAGAATGTCATTGCTCTCCTTGATGGgtaaagactcaaccagaaagtagttgaatctctaaatggcaataaagggc Alignment from Pairagon AGCCAAATAACTATCGGAGCATCCATGGCCGGGCAGTAAATGGTAGCCAGTTGGGAAAGGATTACATCCAGCTGAAGAGCCTGCTCCAACCCATCCGGGTTTACTCCAGAGCCAGCCTGTACGGCCCCAACATCGGACGGCCCAGGAAGAACGTCATTGCTCTCCTAGATGG tatgattgtaaatttagctttgtaagttggggttttatattgctgtgcagAAACAAATAATTACCGGAGCATCCATTGTCGCGCTGTTAATGGTAGCCAATTGGGTAAGGATTACATCCAGCTTAAGGGTCTGCTTCAACCCATCCGAGTTTACTCCAGGGCAAGCCTGTACGGCCCCAACATTGGACGGCCCAGGAAGAATGTCATTGCTCTCCTTGATGGgtaaagactcaaccagaaagtagttgaatctctaaatggcaataaagggc Alignment from Exonerate_protein2genome AGCCAAATAACTATCGGAGCATCCATGGCCGGGCAGTAAATGGTAGCCAGTTGGGAAAGGATTACATCCAGCTGAAGAGCCTGCTCCAACCCATCCGGGTTTACTCCAGAGCCAGCCTGTACGGCCCCAACATCGGACGGCCCAGGAAGAACGTCATTGCTCTCCTAGATGG tatgattgtaaatttagctttgtaagttggggttttatattgctgtgcagAAACAAATAATTACCGGAGCATCCATTGTCGCGCTGTTAATGGTAGCCAATTGGGTAAGGATTACATCCAGCTTAAGGGTCTGCTTCAACCCATCCGAGTTTACTCCAGGGCAAGCCTGTACGGCCCCAACATTGGACGGCCCAGGAAGAATGTCATTGCTCTCCTTGATGGgtaaagactcaaccagaaagtagttgaatctctaaatggcaataaagggc Alignment from Exonerate_coding2genome AGCCAAATAACTATCGGAGCATCCATGGCCGGGCAGTAAATGGTAGCCAGTTGGGAAAGGATTACATCCAGCTGAAGAGCCTGCTCCAACCCATCCGGGTTTACTCCAGAGCCAGCCTGTACGGCCCCAACATCGGACGGCCCAGGAAGAACGTCATTGCTCTCCTAGATGG tatgattgtaaatttagctttgtaagttggggttttatattgctgtgcagAAACAAATAATTACCGGAGCATCCATTGTCGCGCTGTTAATGGTAGCCAATTGGGTAAGGATTACATCCAGCTTAAGGGTCTGCTTCAACCCATCCGAGTTTACTCCAGGGCAAGCCTGTACGGCCCCAACATTGGACGGCCCAGGAAGAATGTCATTGCTCTCCTTGATGGgtaaagactcaaccagaaagtagttgaatctctaaatggcaataaagggc Alignment from GeneWise AGCCAAATAACTATCGGAGCATCCATGGCCGGGCAGTAAATGGTAGCCAGTTGGGAAAGGATTACATCCAGCTGAAGAGCCTGCTCCAACCCATCCGGGTTTACTCCAGAGCCAGCCTGTACGGCCCCAACATCGGACGGCCCAGGAAGAACGTCATTGCTCTCCTAGATGG tatgattgtaaatttagctttgtaagttggggttttatattgctgtgcagAAACAAATAATTACCGGAGCATCCATTGTCGCGCTGTTAATGGTAGCCAATTGGGTAAGGATTACATCCAGCTTAAGGGTCTGCTTCAACCCATCCGAGTTTACTCCAGGGCAAGCCTGTACGGCCCCAACATTGGACGGCCCAGGAAGAATGTCATTGCTCTCCTTGATGGgtaaagactcaaccagaaagtagttgaatctctaaatggcaataaagggc #### Hpse2_ID8710_3 --> 2 - 1 Original Alignment acATTGTCCGGAGTGATGTTGCCTTGGACAAGCAGAAAGGCTGTAAGATTGCCCAGCACCCTGATGTCATGCTGGAGCTCCAGAGAGAGAAGGCATCGCAGATGCATCTGGTTCTTCTGAAGGAGCAATACTCCAATACTTACAGTAACCTCATATTAACAg ataggggtgtcatggtcagttgaaacggtttctccttaaatccaaatcagacATCGTACGGAGTGATGTTGCCTTGGACAAGCACAAAGGTTGTAAAATTGCTCAGCACCCTCATGTCATGCTGGAGTTCCAAAGAGAGGAGGCATCACAGATGCATCTGGTTCTTTTAAAGGAGCAATACTCCAATACATACAGTAACCTCTTATTAACAggtgtgattcaggtgtcttcattcagtgaaaaatttctaagataatgtata Alignment from CESAR acATTGTCCGGAGTGATGTTGCCTTGGACAAGCAGAAAGGCTGTAAGATTGCCCAGCACCCTGATGTCATGCTGGAGCTCCAGAGAGAGAAGGCATCGCAGATGCATCTGGTTCTTCTGAAGGAGCAATACTCCAATACTTACAGTAACCTCATATTAACAg ataggggtgtcatggtcagttgaaacggtttctccttaaatccaaatcagacATCGTACGGAGTGATGTTGCCTTGGACAAGCACAAAGGTTGTAAAATTGCTCAGCACCCTCATGTCATGCTGGAGTTCCAAAGAGAGGAGGCATCACAGATGCATCTGGTTCTTTTAAAGGAGCAATACTCCAATACATACAGTAACCTCTTATTAACAggtgtgattcaggtgtcttcattcagtgaaaaatttctaagataatgtata Alignment from Spaln_aa2Genome ACATTGTCCGGAGTGATGTTGCCTTGGACAAGCAGAAAGGCTGTAAGATTGCCCAGCACCCTGATGTCATGCTGGAGCTCCAGAGAGAGAAGGCATCGCAGATGCATCTGGTTCTTCTGAAGGAGCAATACTCCAATACTTACAGTAACCTCATATTAACAG ataggggtgtcatggtcagttgaaacggtttctccttaaatccaaatcagACATCGTACGGAGTGATGTTGCCTTGGACAAGCACAAAGGTTGTAAAATTGCTCAGCACCCTCATGTCATGCTGGAGTTCCAAAGAGAGGAGGCATCACAGATGCATCTGGTTCTTTTAAAGGAGCAATACTCCAATACATACAGTAACCTCTTATTAACAGgtgtgattcaggtgtcttcattcagtgaaaaatttctaagataatgtata Alignment from Spaln_nt2Genome ACATTGTCCGGAGTGATGTTGCCTTGGACAAGCAGAAAGGCTGTAAGATTGCCCAGCACCCTGATGTCATGCTGGAGCTCCAGAGAGAGAAGGCATCGCAGATGCATCTGGTTCTTCTGAAGGAGCAATACTCCAATACTTACAGTAACCTCATATTAACAG ataggggtgtcatggtcagttgaaacggtttctccttaaatccaaatcagACATCGTACGGAGTGATGTTGCCTTGGACAAGCACAAAGGTTGTAAAATTGCTCAGCACCCTCATGTCATGCTGGAGTTCCAAAGAGAGGAGGCATCACAGATGCATCTGGTTCTTTTAAAGGAGCAATACTCCAATACATACAGTAACCTCTTATTAACAGgtgtgattcaggtgtcttcattcagtgaaaaatttctaagataatgtata Alignment from Pairagon ACATTGTCCGGAGTGATGTTGCCTTGGACAAGCAGAAAGGCTGTAAGATTGCCCAGCACCCTGATGTCATGCTGGAGCTCCAGAGAGAGAAGGCATCGCAGATGCATCTGGTTCTTCTGAAGGAGCAATACTCCAATACTTACAGTAACCTCATATTAACAG ataggggtgtcatggtcagttgaaacggtttctccttaaatccaaatcagACATCGTACGGAGTGATGTTGCCTTGGACAAGCACAAAGGTTGTAAAATTGCTCAGCACCCTCATGTCATGCTGGAGTTCCAAAGAGAGGAGGCATCACAGATGCATCTGGTTCTTTTAAAGGAGCAATACTCCAATACATACAGTAACCTCTTATTAACAGgtgtgattcaggtgtcttcattcagtgaaaaatttctaagataatgtata Alignment from Exonerate_protein2genome ACATTGTCCGGAGTGATGTTGCCTTGGACAAGCAGAAAGGCTGTAAGATTGCCCAGCACCCTGATGTCATGCTGGAGCTCCAGAGAGAGAAGGCATCGCAGATGCATCTGGTTCTTCTGAAGGAGCAATACTCCAATACTTACAGTAACCTCATATTAACAG ataggggtgtcatggtcagttgaaacggtttctccttaaatccaaatcagACATCGTACGGAGTGATGTTGCCTTGGACAAGCACAAAGGTTGTAAAATTGCTCAGCACCCTCATGTCATGCTGGAGTTCCAAAGAGAGGAGGCATCACAGATGCATCTGGTTCTTTTAAAGGAGCAATACTCCAATACATACAGTAACCTCTTATTAACAGgtgtgattcaggtgtcttcattcagtgaaaaatttctaagataatgtata Alignment from Exonerate_coding2genome ACATTGTCCGGAGTGATGTTGCCTTGGACAAGCAGAAAGGCTGTAAGATTGCCCAGCACCCTGATGTCATGCTGGAGCTCCAGAGAGAGAAGGCATCGCAGATGCATCTGGTTCTTCTGAAGGAGCAATACTCCAATACTTACAGTAACCTCATATTAACAG ataggggtgtcatggtcagttgaaacggtttctccttaaatccaaatcagACATCGTACGGAGTGATGTTGCCTTGGACAAGCACAAAGGTTGTAAAATTGCTCAGCACCCTCATGTCATGCTGGAGTTCCAAAGAGAGGAGGCATCACAGATGCATCTGGTTCTTTTAAAGGAGCAATACTCCAATACATACAGTAACCTCTTATTAACAGgtgtgattcaggtgtcttcattcagtgaaaaatttctaagataatgtata Alignment from GeneWise ACATTGTCCGGAGTGATGTTGCCTTGGACAAGCAGAAAGGCTGTAAGATTGCCCAGCACCCTGATGTCATGCTGGAGCTCCAGAGAGAGAAGGCATCGCAGATGCATCTGGTTCTTCTGAAGGAGCAATACTCCAATACTTACAGTAACCTCATATTAACAG ataggggtgtcatggtcagttgaaacggtttctccttaaatccaaatcagACATCGTACGGAGTGATGTTGCCTTGGACAAGCACAAAGGTTGTAAAATTGCTCAGCACCCTCATGTCATGCTGGAGTTCCAAAGAGAGGAGGCATCACAGATGCATCTGGTTCTTTTAAAGGAGCAATACTCCAATACATACAGTAACCTCTTATTAACAGgtgtgattcaggtgtcttcattcagtgaaaaatttctaagataatgtata #### Hrasls5_ID2196_2 --> 2 - 2 Original Alignment acTCAGCGAGTTCTCAAGCGCTGTTGGTCCAGTTCTTGCCGAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGgg aacaattttggtggatatcatgtagactgtgtttctatttttgtctctagacTCAGCAGGTTCTCAAGCATTGTTTGTTCAGTTCCTGCCAAATCAACTCAAACAAGATCGTCAATTGGAACAGGCCCATAGCTTTCAGCAAgggtaagattttttgaattattttgttgagataatagtcttatgatgatgag Alignment from CESAR acTCAGCGAGTTCTCAAGCGCTGTTGGTCCAGTTCTTGCCGAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGgg aacaattttggtggatatcatgtagactgtgtttctatttttgtctctagacTCAGCAGGTTCTCAAGCATTGTTTGTTCAGTTCCTGCCAAATCAACTCAAACAAGATCGTCAATTGGAACAGGCCCATAGCTTTCAGCAAgggtaagattttttgaattattttgttgagataatagtcttatgatgatgag Alignment from Spaln_aa2Genome ACTCAGCGAGTTCTCAAGCGCTGTTGGTCCAGTTCTTGCCGAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGGG aacaattttggtggatatcatgtagactgtgtttctatttttgtctctagACTCAGCAGGTTCTCAAGCATTGTTTGTTCAGTTCCTGCCAAATCAACTCAAACAAGATCGTCAATTGGAACAGGCCCATAGCTTTCAGCAAGGgtaagattttttgaattattttgttgagataatagtcttatgatgatgag Alignment from Spaln_nt2Genome ACTCAGCGAGTTCTCAAGCGCTGTTGGTCCAGTTCTTGCCGAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGGG aacaattttggtggatatcatgtagactgtgtttctatttttgtctctagACTCAGCAGGTTCTCAAGCATTGTTTGTTCAGTTCCTGCCAAATCAACTCAAACAAGATCGTCAATTGGAACAGGCCCATAGCTTTCAGCAAGGgtaagattttttgaattattttgttgagataatagtcttatgatgatgag Alignment from Pairagon ACTCAGCGAGTTCTCAAGCGCTGTTGGTCCAGTTCTTGCCGAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGGG aacaattttggtggatatcatgtagactgtgtttctatttttgtctctagACTCAGCAGGTTCTCAAGCATTGTTTGTTCAGTTCCTGCCAAATCAACTCAAACAAGATCGTCAATTGGAACAGGCCCATAGCTTTCAGCAAGGgtaagattttttgaattattttgttgagataatagtcttatgatgatgag Alignment from Exonerate_protein2genome ACTCAGCGAGTTCTCAAGCGCTGTTGGTCCAGTTCTTGCCGAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGGG aacaattttggtggatatcatgtagactgtgtttctatttttgtctctagACTCAGCAGGTTCTCAAGCATTGTTTGTTCAGTTCCTGCCAAATCAACTCAAACAAGATCGTCAATTGGAACAGGCCCATAGCTTTCAGCAAGGgtaagattttttgaattattttgttgagataatagtcttatgatgatgag Alignment from Exonerate_coding2genome ACTCAGCGAGTTCTCAAGCGCTGTTGGTCCAGTTCTTGCCGAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGGG aacaattttggtggatatcatgtagactgtgtttctatttttgtctctagACTCAGCAGGTTCTCAAGCATTGTTTGTTCAGTTCCTGCCAAATCAACTCAAACAAGATCGTCAATTGGAACAGGCCCATAGCTTTCAGCAAGGgtaagattttttgaattattttgttgagataatagtcttatgatgatgag Alignment from GeneWise ACTCAGCGAGTTCTCAAGCGCTGTTGGTCCAGTTCTTGCCGAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGGG aacaattttggtggatatcatgtagactgtgtttctatttttgtctctagACTCAGCAGGTTCTCAAGCATTGTTTGTTCAGTTCCTGCCAAATCAACTCAAACAAGATCGTCAATTGGAACAGGCCCATAGCTTTCAGCAAGGgtaagattttttgaattattttgttgagataatagtcttatgatgatgag #### Hrasls5_ID2198_4 --> 0 - 1 Original Alignment GGCAATCCAAGACCCAGACCTGGAGACCTGATTGAGATTTTTCGAATTGGCTATGAACATTGGGCCATCTATGTGGAAGATGACTGCGTGGTCCACCTGGCTCCCCCAa ggcttgtcctcaccactggccgtgtccaactttcttccttgtatctgtagGGGAATGCTAGACCTAGACCTGTTGACTTGATTGAAATCTTTCGAATCTGCTGTAAACATTGGTCAGCCTATGTGGAAGATGATTGTGTGGTCCATCTGGCCCCTCAAagtaaggttgagaaccaacttcgatcctatcgctatagatagggtccccca Alignment from CESAR GGCAATCCAAGACCCAGACCTGGAGACCTGATTGAGATTTTTCGAATTGGCTATGAACATTGGGCCATCTATGTGGAAGATGACTGCGTGGTCCACCTGGCTCCCCCAa ggcttgtcctcaccactggccgtgtccaactttcttccttgtatctgtagGGGAATGCTAGACCTAGACCTGTTGACTTGATTGAAATCTTTCGAATCTGCTGTAAACATTGGTCAGCCTATGTGGAAGATGATTGTGTGGTCCATCTGGCCCCTCAAagtaaggttgagaaccaacttcgatcctatcgctatagatagggtccccca Alignment from Spaln_aa2Genome GGCAATCCAAGACCCAGACCTGGAGACCTGATTGAGATTTTTCGAATTGGCTATGAACATTGGGCCATCTATGTGGAAGATGACTGCGTGGTCCACCTGGCTCCCCCAA ggcttgtcctcaccactggccgtgtccaactttcttccttgtatctgtagGGGAATGCTAGACCTAGACCTGTTGACTTGATTGAAATCTTTCGAATCTGCTGTAAACATTGGTCAGCCTATGTGGAAGATGATTGTGTGGTCCATCTGGCCCCTCAAAgtaaggttgagaaccaacttcgatcctatcgctatagatagggtccccca Alignment from Spaln_nt2Genome GGCAATCCAAGACCCAGACCTGGAGACCTGATTGAGATTTTTCGAATTGGCTATGAACATTGGGCCATCTATGTGGAAGATGACTGCGTGGTCCACCTGGCTCCCCCAA ggcttgtcctcaccactggccgtgtccaactttcttccttgtatctgtagGGGAATGCTAGACCTAGACCTGTTGACTTGATTGAAATCTTTCGAATCTGCTGTAAACATTGGTCAGCCTATGTGGAAGATGATTGTGTGGTCCATCTGGCCCCTCAAAgtaaggttgagaaccaacttcgatcctatcgctatagatagggtccccca Alignment from Pairagon GGCAATCCAAGACCCAGACCTGGAGACCTGATTGAGATTTTTCGAATTGGCTATGAACATTGGGCCATCTATGTGGAAGATGACTGCGTGGTCCACCTGGCTCCCCCAA ggcttgtcctcaccactggccgtgtccaactttcttccttgtatctgtagGGGAATGCTAGACCTAGACCTGTTGACTTGATTGAAATCTTTCGAATCTGCTGTAAACATTGGTCAGCCTATGTGGAAGATGATTGTGTGGTCCATCTGGCCCCTCAAAgtaaggttgagaaccaacttcgatcctatcgctatagatagggtccccca Alignment from Exonerate_protein2genome GGCAATCCAAGACCCAGACCTGGAGACCTGATTGAGATTTTTCGAATTGGCTATGAACATTGGGCCATCTATGTGGAAGATGACTGCGTGGTCCACCTGGCTCCCCCAA ggcttgtcctcaccactggccgtgtccaactttcttccttgtatctgtagGGGAATGCTAGACCTAGACCTGTTGACTTGATTGAAATCTTTCGAATCTGCTGTAAACATTGGTCAGCCTATGTGGAAGATGATTGTGTGGTCCATCTGGCCCCTCAAAgtaaggttgagaaccaacttcgatcctatcgctatagatagggtccccca Alignment from Exonerate_coding2genome GGCAATCCAAGACCCAGACCTGGAGACCTGATTGAGATTTTTCGAATTGGCTATGAACATTGGGCCATCTATGTGGAAGATGACTGCGTGGTCCACCTGGCTCCCCCAA ggcttgtcctcaccactggccgtgtccaactttcttccttgtatctgtagGGGAATGCTAGACCTAGACCTGTTGACTTGATTGAAATCTTTCGAATCTGCTGTAAACATTGGTCAGCCTATGTGGAAGATGATTGTGTGGTCCATCTGGCCCCTCAAAgtaaggttgagaaccaacttcgatcctatcgctatagatagggtccccca Alignment from GeneWise GGCAATCCAAGACCCAGACCTGGAGACCTGATTGAGATTTTTCGAATTGGCTATGAACATTGGGCCATCTATGTGGAAGATGACTGCGTGGTCCACCTGGCTCCCCCAA ggcttgtcctcaccactggccgtgtccaactttcttccttgtatctgtagGGGAATGCTAGACCTAGACCTGTTGACTTGATTGAAATCTTTCGAATCTGCTGTAAACATTGGTCAGCCTATGTGGAAGATGATTGTGTGGTCCATCTGGCCCCTCAAAgtaaggttgagaaccaacttcgatcctatcgctatagatagggtccccca #### Hspa12a_ID12805_10 --> 2 - 2 Original Alignment gtGGACCGTACGGATCCCTGGGAGTGGATTATGAATTTGAAAAACTCCTTTGTAAAATATTTGGAGAGGATTTTATCGAACAGTTCAAGATCAAACGCCCGGCAGCCTGGGTTGACCTAATGATTGCCTTTGAGTCTCGCAAAAGAGCTGCTGCACCAGATCGAACCAATCCCCTGAACATCACTCTGCCCTTCTCCTTCATTGACTACTACAAGAAGTTCCGGGGCCACAGCGTGGAGCATGCATTGAGGAAGAGCaa aagataaggaagagaaacaggattatctgaggctcctttctcccttccagttGGACCCTATGGATCCCTTGGAGTGGATTATGAT---GAAAAACTTCTCTGCGAGATTTTTGGAGATGACTTTATAGAACAATTTAAAGTGAAATGCCCTGCAGCCTGGGTTGACCTGATGATTGCCTTTGAGTCCCACAAT------GCTACACCAGAGCAGACCAATCCCTTGAACACCAGCCTGCCTTTTTCCCTCATTTACTACTACAGTAAATTCTGGGGTCACAGTGTGGAACATGCTCTGAGAAAGAGCaagtaagggagtatgagtcatagtggcaacttttagcataacatctatgagt Alignment from CESAR gtGGACCGTACGGATCCCTGGGAGTGGATTATGAATTTGAAAAACTCCTTTGTAAAATATTTGGAGAGGATTTTATCGAACAGTTCAAGATCAAACGCCCGGCAGCCTGGGTTGACCTAATGATTGCCTTTGAGTCTCGCAAAAGAGCTGCTGCACCAGATCGAACCAATCCCCTGAACATCACTCTGCCCTTCTCCTTCATTGACTACTACAAGAAGTTCCGGGGCCACAGCGTGGAGCATGCATTGAGGAAGAGCaa aagataaggaagagaaacaggattatctgaggctcctttctcccttccagttGGACCCTATGGATCCCTTGGAGTGGATTATGAT---GAAAAACTTCTCTGCGAGATTTTTGGAGATGACTTTATAGAACAATTTAAAGTGAAATGCCCTGCAGCCTGGGTTGACCTGATGATTGCCTTTGAGTCCCACAAT------GCTACACCAGAGCAGACCAATCCCTTGAACACCAGCCTGCCTTTTTCCCTCATTTACTACTACAGTAAATTCTGGGGTCACAGTGTGGAACATGCTCTGAGAAAGAGCaagtaagggagtatgagtcatagtggcaacttttagcataacatctatgagt Alignment from Spaln_aa2Genome GTGGACCGTACGGATCCCTGGGAGTGGATTATGAATTTGAAAAACTCCTTTGTAAAATATTTGGAGAGGATTTTATCGAACAGTTCAAGATCAAACGCCCGGCAGCCTGGGTTGACCTAATGATTGCCTTTGAGTCTCGCAAAAGAGCTGCTGCACCAGATCGAACCAATCCCCTGAACATCACTCTGCCCTTCTCCTTCATTGACTACTACAAGAAGTTCCGGGGCCACAGCGTGGAGCATGCATTGAGGAAGAGCAA aagataaggaagagaaacaggattatctgaggctcctttctcccttccagTTGGACCCTATGGATCCCTTGGAGTGGATTATGAT---GAAAAACTTCTCTGCGAGATTTTTGGAGATGACTTTATAGAACAATTTAAAGTGAAATGCCCTGCAGCCTGGGTTGACCTGATGATTGCCTTTGAGTCCCACAAT------GCTACACCAGAGCAGACCAATCCCTTGAACACCAGCCTGCCTTTTTCCCTCATTTACTACTACAGTAAATTCTGGGGTCACAGTGTGGAACATGCTCTGAGAAAGAGCAAgtaagggagtatgagtcatagtggcaacttttagcataacatctatgagt Alignment from Spaln_nt2Genome GTGGACCGTACGGATCCCTGGGAGTGGATTATGAATTTGAAAAACTCCTTTGTAAAATATTTGGAGAGGATTTTATCGAACAGTTCAAGATCAAACGCCCGGCAGCCTGGGTTGACCTAATGATTGCCTTTGAGTCTCGCAAAAGAGCTGCTGCACCAGATCGAACCAATCCCCTGAACATCACTCTGCCCTTCTCCTTCATTGACTACTACAAGAAGTTCCGGGGCCACAGCGTGGAGCATGCATTGAGGAAGAGCAA aagataaggaagagaaacaggattatctgaggctcctttctcccttccagTTGGACCCTATGGATCCCTTGGAGTGGATTATGA---TGAAAAACTTCTCTGCGAGATTTTTGGAGATGACTTTATAGAACAATTTAAAGTGAAATGCCCTGCAGCCTGGGTTGACCTGATGATTGCCTTTGAGTCCCACAA------TGCTACACCAGAGCAGACCAATCCCTTGAACACCAGCCTGCCTTTTTCCCTCATTTACTACTACAGTAAATTCTGGGGTCACAGTGTGGAACATGCTCTGAGAAAGAGCAAgtaagggagtatgagtcatagtggcaacttttagcataacatctatgagt Alignment from Pairagon GTGGACCGTACGGATCCCTGGGAGTGGATTATGAATTTGAAAAACTCCTTTGTAAAATATTTGGAGAGGATTTTATCGAACAGTTCAAGATCAAACGCCCGGCAGCCTGGGTTGACCTAATGATTGCCTTTGAGTCTCGCAAAAGAGCTGCTGCACCAGATCGAACCAATCCCCTGAACATCACTCTGCCCTTCTCCTTCATTGACTACTACAAGAAGTTCCGGGGCCACAGCGTGGAGCATGCATTGAGGAAGAGCAA aagataaggaagagaaacaggattatctgaggctcctttctcccttccagTTGGACCCTATGGATCCCTTGGAGTGGATTATGA---TGAAAAACTTCTCTGCGAGATTTTTGGAGATGACTTTATAGAACAATTTAAAGTGAAATGCCCTGCAGCCTGGGTTGACCTGATGATTGCCTTTGAGTCCCACAA------TGCTACACCAGAGCAGACCAATCCCTTGAACACCAGCCTGCCTTTTTCCCTCATTTACTACTACAGTAAATTCTGGGGTCACAGTGTGGAACATGCTCTGAGAAAGAGCAAgtaagggagtatgagtcatagtggcaacttttagcataacatctatgagt Alignment from Exonerate_protein2genome GTGGACCGTACGGATCCCTGGGAGTGGATTATGAATTTGAAAAACTCCTTTGTAAAATATTTGGAGAGGATTTTATCGAACAGTTCAAGATCAAACGCCCGGCAGCCTGGGTTGACCTAATGATTGCCTTTGAGTCTCGCAAAAGAGCTGCTGCACCAGATCGAACCAATCCCCTGAACATCACTCTGCCCTTCTCCTTCATTGACTACTACAAGAAGTTCCGGGGCCACAGCGTGGAGCATGCATTGAGGAAGAGCAA aagataaggaagagaaacaggattatctgaggctcctttctcccttccagTTGGACCCTATGGATCCCTTGGAGTGGATTATGAT---GAAAAACTTCTCTGCGAGATTTTTGGAGATGACTTTATAGAACAATTTAAAGTGAAATGCCCTGCAGCCTGGGTTGACCTGATGATTGCCTTTGAGTCCCACAAT------GCTACACCAGAGCAGACCAATCCCTTGAACACCAGCCTGCCTTTTTCCCTCATTTACTACTACAGTAAATTCTGGGGTCACAGTGTGGAACATGCTCTGAGAAAGAGCAAgtaagggagtatgagtcatagtggcaacttttagcataacatctatgagt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGGACCGTACGGATCCCTGGGAGTGGATTATGAATTTGAAAAACTCCTTTGTAAAATATTTGGAGAGGATTTTATCGAACAGTTCAAGATCAAACGCCCGGCAGCCTGGGTTGACCTAATGATTGCCTTTGAGTCTCGCAAAAGAGCTGCTGCACCAGATCGAACCAATCCCCTGAACATCACTCTGCCCTTCTCCTTCATTGACTACTACAAGAAGTTCCGGGGCCACAGCGTGGAGCATGCATTGAGGAAGAGCAA aagataaggaagagaaacaggattatctgaggctcctttctcccttccagTTGGACCCTATGGATCCCTTGGAGTGGATTATGAT---GAAAAACTTCTCTGCGAGATTTTTGGAGATGACTTTATAGAACAATTTAAAGTGAAATGCCCTGCAGCCTGGGTTGACCTGATGATTGCCTTTGAGTCCCACAAT------GCTACACCAGAGCAGACCAATCCCTTGAACACCAGCCTGCCTTTTTCCCTCATTTACTACTACAGTAAATTCTGGGGTCACAGTGTGGAACATGCTCTGAGAAAGAGCAAgtaagggagtatgagtcatagtggcaacttttagcataacatctatgagt #### Il33_ID6361_4 --> 2 - 1 Original Alignment gaACTTCACTTTTAACACAGTCTCCTGCCTCCCTGAGTACATACAATGACCAATCTGTTAGTTTTGTTTTGGAGAATGGATGTTATGTGATCAATGTTGACGACTCTGGAAAAGACCAAGAGCAAg ctggttgggctggtagacacataaaatgccatttattttctcttctaaaggaACTGCACTTTTAACTCAAACACCAGCTTCCCTAAGTACATACAATGACCAGTCTGAGAGTTTTGTGTTAGAAAATGGATGTTATGTGCTAAATATTGATGATTCTGGTAAAGACCAGGAACATggtgagtcttaaccatgccagaggtccctgggtttatgcttaatgagaatg Alignment from CESAR gaACTTCACTTTTAACACAGTCTCCTGCCTCCCTGAGTACATACAATGACCAATCTGTTAGTTTTGTTTTGGAGAATGGATGTTATGTGATCAATGTTGACGACTCTGGAAAAGACCAAGAGCAAg ctggttgggctggtagacacataaaatgccatttattttctcttctaaaggaACTGCACTTTTAACTCAAACACCAGCTTCCCTAAGTACATACAATGACCAGTCTGAGAGTTTTGTGTTAGAAAATGGATGTTATGTGCTAAATATTGATGATTCTGGTAAAGACCAGGAACATggtgagtcttaaccatgccagaggtccctgggtttatgcttaatgagaatg Alignment from Spaln_aa2Genome GAACTTCACTTTTAACACAGTCTCCTGCCTCCCTGAGTACATACAATGACCAATCTGTTAGTTTTGTTTTGGAGAATGGATGTTATGTGATCAATGTTGACGACTCTGGAAAAGACCAAGAGCAAG ctggttgggctggtagacacataaaatgccatttattttctcttctaaagGAACTGCACTTTTAACTCAAACACCAGCTTCCCTAAGTACATACAATGACCAGTCTGAGAGTTTTGTGTTAGAAAATGGATGTTATGTGCTAAATATTGATGATTCTGGTAAAGACCAGGAACATGgtgagtcttaaccatgccagaggtccctgggtttatgcttaatgagaatg Alignment from Spaln_nt2Genome GAACTTCACTTTTAACACAGTCTCCTGCCTCCCTGAGTACATACAATGACCAATCTGTTAGTTTTGTTTTGGAGAATGGATGTTATGTGATCAATGTTGACGACTCTGGAAAAGACCAAGAGCAAG ctggttgggctggtagacacataaaatgccatttattttctcttctaaagGAACTGCACTTTTAACTCAAACACCAGCTTCCCTAAGTACATACAATGACCAGTCTGAGAGTTTTGTGTTAGAAAATGGATGTTATGTGCTAAATATTGATGATTCTGGTAAAGACCAGGAACATGgtgagtcttaaccatgccagaggtccctgggtttatgcttaatgagaatg Alignment from Pairagon GAACTTCACTTTTAACACAGTCTCCTGCCTCCCTGAGTACATACAATGACCAATCTGTTAGTTTTGTTTTGGAGAATGGATGTTATGTGATCAATGTTGACGACTCTGGAAAAGACCAAGAGCAAG ctggttgggctggtagacacataaaatgccatttattttctcttctaaagGAACTGCACTTTTAACTCAAACACCAGCTTCCCTAAGTACATACAATGACCAGTCTGAGAGTTTTGTGTTAGAAAATGGATGTTATGTGCTAAATATTGATGATTCTGGTAAAGACCAGGAACATGgtgagtcttaaccatgccagaggtccctgggtttatgcttaatgagaatg Alignment from Exonerate_protein2genome GAACTTCACTTTTAACACAGTCTCCTGCCTCCCTGAGTACATACAATGACCAATCTGTTAGTTTTGTTTTGGAGAATGGATGTTATGTGATCAATGTTGACGACTCTGGAAAAGACCAAGAGCAAG ctggttgggctggtagacacataaaatgccatttattttctcttctaaagGAACTGCACTTTTAACTCAAACACCAGCTTCCCTAAGTACATACAATGACCAGTCTGAGAGTTTTGTGTTAGAAAATGGATGTTATGTGCTAAATATTGATGATTCTGGTAAAGACCAGGAACATGgtgagtcttaaccatgccagaggtccctgggtttatgcttaatgagaatg Alignment from Exonerate_coding2genome GAACTTCACTTTTAACACAGTCTCCTGCCTCCCTGAGTACATACAATGACCAATCTGTTAGTTTTGTTTTGGAGAATGGATGTTATGTGATCAATGTTGACGACTCTGGAAAAGACCAAGAGCAAG ctggttgggctggtagacacataaaatgccatttattttctcttctaaagGAACTGCACTTTTAACTCAAACACCAGCTTCCCTAAGTACATACAATGACCAGTCTGAGAGTTTTGTGTTAGAAAATGGATGTTATGTGCTAAATATTGATGATTCTGGTAAAGACCAGGAACATGgtgagtcttaaccatgccagaggtccctgggtttatgcttaatgagaatg Alignment from GeneWise GAACTTCACTTTTAACACAGTCTCCTGCCTCCCTGAGTACATACAATGACCAATCTGTTAGTTTTGTTTTGGAGAATGGATGTTATGTGATCAATGTTGACGACTCTGGAAAAGACCAAGAGCAAG ctggttgggctggtagacacataaaatgccatttattttctcttctaaagGAACTGCACTTTTAACTCAAACACCAGCTTCCCTAAGTACATACAATGACCAGTCTGAGAGTTTTGTGTTAGAAAATGGATGTTATGTGCTAAATATTGATGATTCTGGTAAAGACCAGGAACATGgtgagtcttaaccatgccagaggtccctgggtttatgcttaatgagaatg #### Incenp_ID2605_14 --> 1 - 0 Original Alignment gGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG tcccctgcattgttggggactagcagactaacgctgatttcttctcccaggGAGATGCAAGAGAGAGAAAAGGCCTTGAGACTCCAAAAAGAACGGCTTCAAAAGGAACTGGGGGAAAAGAAGCAGAAGgtgtgtgccctgcagacatatattccgcacagtaagtccgatctggagca Alignment from CESAR gGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG tcccctgcattgttggggactagcagactaacgctgatttcttctcccaggGAGATGCAAGAGAGAGAAAAGGCCTTGAGACTCCAAAAAGAACGGCTTCAAAAGGAACTGGGGGAAAAGAAGCAGAAGgtgtgtgccctgcagacatatattccgcacagtaagtccgatctggagca Alignment from Spaln_aa2Genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG tcccctgcattgttggggactagcagactaacgctgatttcttctcccagGGAGATGCAAGAGAGAGAAAAGGCCTTGAGACTCCAAAAAGAACGGCTTCAAAAGGAACTGGGGGAAAAGAAGCAGAAGgtgtgtgccctgcagacatatattccgcacagtaagtccgatctggagca Alignment from Spaln_nt2Genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG tcccctgcattgttggggactagcagactaacgctgatttcttctcccagGGAGATGCAAGAGAGAGAAAAGGCCTTGAGACTCCAAAAAGAACGGCTTCAAAAGGAACTGGGGGAAAAGAAGCAGAAGgtgtgtgccctgcagacatatattccgcacagtaagtccgatctggagca Alignment from Pairagon GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG tcccctgcattgttggggactagcagactaacgctgatttcttctcccagGGAGATGCAAGAGAGAGAAAAGGCCTTGAGACTCCAAAAAGAACGGCTTCAAAAGGAACTGGGGGAAAAGAAGCAGAAGgtgtgtgccctgcagacatatattccgcacagtaagtccgatctggagca Alignment from Exonerate_protein2genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG tcccctgcattgttggggactagcagactaacgctgatttcttctcccagGGAGATGCAAGAGAGAGAAAAGGCCTTGAGACTCCAAAAAGAACGGCTTCAAAAGGAACTGGGGGAAAAGAAGCAGAAGgtgtgtgccctgcagacatatattccgcacagtaagtccgatctggagca Alignment from Exonerate_coding2genome tcccctgcattgttggggactagcagactaacgctgatttcttctcccagggagatgcaagagagagaaaaggccttgagactccaaaaagaacggcttcaaaaggaactgggggaaaagaagcagaaggtgtgtgccctgcagacatatattccgcacagtaagtccgatctggagca Alignment from GeneWise GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG tcccctgcattgttggggactagcagactaacgctgatttcttctcccagGGAGATGCAAGAGAGAGAAAAGGCCTTGAGACTCCAAAAAGAACGGCTTCAAAAGGAACTGGGGGAAAAGAAGCAGAAGgtgtgtgccctgcagacatatattccgcacagtaagtccgatctggagca #### Incenp_ID2614_5 --> 1 - 0 Original Alignment cCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG tggagcctctttctaccatgaagatataatgtcttttcattgtcttttagcCTGGAGCAGGAGCCAGTTGAGGTTACTGAGCCTGAAGATACAGAAGAGGAGCAAGAGgtaagtctgggccaactcttactcccctcagcttatgaggcactctcact Alignment from CESAR cCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG tggagcctctttctaccatgaagatataatgtcttttcattgtcttttagcCTGGAGCAGGAGCCAGTTGAGGTTACTGAGCCTGAAGATACAGAAGAGGAGCAAGAGgtaagtctgggccaactcttactcccctcagcttatgaggcactctcact Alignment from Spaln_aa2Genome CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG tggagcctctttctaccatgaagatataatgtcttttcattgtcttttagCCTGGAGCAGGAGCCAGTTGAGGTTACTGAGCCTGAAGATACAGAAGAGGAGCAAGAGgtaagtctgggccaactcttactcccctcagcttatgaggcactctcact Alignment from Spaln_nt2Genome CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG tggagcctctttctaccatgaagatataatgtcttttcattgtcttttagCCTGGAGCAGGAGCCAGTTGAGGTTACTGAGCCTGAAGATACAGAAGAGGAGCAAGAGgtaagtctgggccaactcttactcccctcagcttatgaggcactctcact Alignment from Pairagon CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG tggagcctctttctaccatgaagatataatgtcttttcattgtcttttagCCTGGAGCAGGAGCCAGTTGAGGTTACTGAGCCTGAAGATACAGAAGAGGAGCAAGAGgtaagtctgggccaactcttactcccctcagcttatgaggcactctcact Alignment from Exonerate_protein2genome CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG tggagcctctttctaccatgaagatataatgtcttttcattgtcttttagCCTGGAGCAGGAGCCAGTTGAGGTTACTGAGCCTGAAGATACAGAAGAGGAGCAAGAGgtaagtctgggccaactcttactcccctcagcttatgaggcactctcact Alignment from Exonerate_coding2genome CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG tggagcctctttctaccatgaagatataatgtcttttcattgtcttttagCCTGGAGCAGGAGCCAGTTGAGGTTACTGAGCCTGAAGATACAGAAGAGGAGCAAGAGgtaagtctgggccaactcttactcccctcagcttatgaggcactctcact Alignment from GeneWise CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG tggagcctctttctaccatgaagatataatgtcttttcattgtcttttagCCTGGAGCAGGAGCCAGTTGAGGTTACTGAGCCTGAAGATACAGAAGAGGAGCAAGAGgtaagtctgggccaactcttactcccctcagcttatgaggcactctcact #### Jak2_ID6233_9 --> 0 - 1 Original Alignment CGAGAAAATGTCATTGAATATAAACACTGTTTGATTACGAAGAATGAGAATGGAGAATACAACCTCAGCGGGACTAAGAGGAACTTCAGTAACCTTAAGGACCTTTTGAATTGCTACCAGATGGAAACTGTGCGCTCAGACAGTATCATCTTCCAGTTTACCAAATGCTGCCCCCCAAAGCCAAAAg gggacccacatagtgagactggtttgctagagtcctgtgtcctttggcagCGTGAAAACATTATTAAATACAAACATTGTCTAATTACAAAGAATGAGAACGGTGAATATAACCTCAGTGGCATAAAAAGGAACTTTGGTAATCTCAAGGATCTTTTGAATTGCTATCAGATGGAAACTGTGAGATCAGACAGTATTATTTTCCAGTTTACTAAATGCTGCCCACCTAAGCCCAGAggtactgaacagcctgctgtgaatgggtccttgtctgtacacactataatt Alignment from CESAR CGAGAAAATGTCATTGAATATAAACACTGTTTGATTACGAAGAATGAGAATGGAGAATACAACCTCAGCGGGACTAAGAGGAACTTCAGTAACCTTAAGGACCTTTTGAATTGCTACCAGATGGAAACTGTGCGCTCAGACAGTATCATCTTCCAGTTTACCAAATGCTGCCCCCCAAAGCCAAAAg gggacccacatagtgagactggtttgctagagtcctgtgtcctttggcagCGTGAAAACATTATTAAATACAAACATTGTCTAATTACAAAGAATGAGAACGGTGAATATAACCTCAGTGGCATAAAAAGGAACTTTGGTAATCTCAAGGATCTTTTGAATTGCTATCAGATGGAAACTGTGAGATCAGACAGTATTATTTTCCAGTTTACTAAATGCTGCCCACCTAAGCCCAGAggtactgaacagcctgctgtgaatgggtccttgtctgtacacactataatt Alignment from Spaln_aa2Genome CGAGAAAATGTCATTGAATATAAACACTGTTTGATTACGAAGAATGAGAATGGAGAATACAACCTCAGCGGGACTAAGAGGAACTTCAGTAACCTTAAGGACCTTTTGAATTGCTACCAGATGGAAACTGTGCGCTCAGACAGTATCATCTTCCAGTTTACCAAATGCTGCCCCCCAAAGCCAAAAG gggacccacatagtgagactggtttgctagagtcctgtgtcctttggcagCGTGAAAACATTATTAAATACAAACATTGTCTAATTACAAAGAATGAGAACGGTGAATATAACCTCAGTGGCATAAAAAGGAACTTTGGTAATCTCAAGGATCTTTTGAATTGCTATCAGATGGAAACTGTGAGATCAGACAGTATTATTTTCCAGTTTACTAAATGCTGCCCACCTAAGCCCAGAGgtactgaacagcctgctgtgaatgggtccttgtctgtacacactataatt Alignment from Spaln_nt2Genome CGAGAAAATGTCATTGAATATAAACACTGTTTGATTACGAAGAATGAGAATGGAGAATACAACCTCAGCGGGACTAAGAGGAACTTCAGTAACCTTAAGGACCTTTTGAATTGCTACCAGATGGAAACTGTGCGCTCAGACAGTATCATCTTCCAGTTTACCAAATGCTGCCCCCCAAAGCCAAAAG gggacccacatagtgagactggtttgctagagtcctgtgtcctttggcagCGTGAAAACATTATTAAATACAAACATTGTCTAATTACAAAGAATGAGAACGGTGAATATAACCTCAGTGGCATAAAAAGGAACTTTGGTAATCTCAAGGATCTTTTGAATTGCTATCAGATGGAAACTGTGAGATCAGACAGTATTATTTTCCAGTTTACTAAATGCTGCCCACCTAAGCCCAGAGgtactgaacagcctgctgtgaatgggtccttgtctgtacacactataatt Alignment from Pairagon CGAGAAAATGTCATTGAATATAAACACTGTTTGATTACGAAGAATGAGAATGGAGAATACAACCTCAGCGGGACTAAGAGGAACTTCAGTAACCTTAAGGACCTTTTGAATTGCTACCAGATGGAAACTGTGCGCTCAGACAGTATCATCTTCCAGTTTACCAAATGCTGCCCCCCAAAGCCAAAAG gggacccacatagtgagactggtttgctagagtcctgtgtcctttggcagCGTGAAAACATTATTAAATACAAACATTGTCTAATTACAAAGAATGAGAACGGTGAATATAACCTCAGTGGCATAAAAAGGAACTTTGGTAATCTCAAGGATCTTTTGAATTGCTATCAGATGGAAACTGTGAGATCAGACAGTATTATTTTCCAGTTTACTAAATGCTGCCCACCTAAGCCCAGAGgtactgaacagcctgctgtgaatgggtccttgtctgtacacactataatt Alignment from Exonerate_protein2genome CGAGAAAATGTCATTGAATATAAACACTGTTTGATTACGAAGAATGAGAATGGAGAATACAACCTCAGCGGGACTAAGAGGAACTTCAGTAACCTTAAGGACCTTTTGAATTGCTACCAGATGGAAACTGTGCGCTCAGACAGTATCATCTTCCAGTTTACCAAATGCTGCCCCCCAAAGCCAAAAG gggacccacatagtgagactggtttgctagagtcctgtgtcctttggcagCGTGAAAACATTATTAAATACAAACATTGTCTAATTACAAAGAATGAGAACGGTGAATATAACCTCAGTGGCATAAAAAGGAACTTTGGTAATCTCAAGGATCTTTTGAATTGCTATCAGATGGAAACTGTGAGATCAGACAGTATTATTTTCCAGTTTACTAAATGCTGCCCACCTAAGCCCAGAGgtactgaacagcctgctgtgaatgggtccttgtctgtacacactataatt Alignment from Exonerate_coding2genome CGAGAAAATGTCATTGAATATAAACACTGTTTGATTACGAAGAATGAGAATGGAGAATACAACCTCAGCGGGACTAAGAGGAACTTCAGTAACCTTAAGGACCTTTTGAATTGCTACCAGATGGAAACTGTGCGCTCAGACAGTATCATCTTCCAGTTTACCAAATGCTGCCCCCCAAAGCCAAAAG gggacccacatagtgagactggtttgctagagtcctgtgtcctttggcagCGTGAAAACATTATTAAATACAAACATTGTCTAATTACAAAGAATGAGAACGGTGAATATAACCTCAGTGGCATAAAAAGGAACTTTGGTAATCTCAAGGATCTTTTGAATTGCTATCAGATGGAAACTGTGAGATCAGACAGTATTATTTTCCAGTTTACTAAATGCTGCCCACCTAAGCCCAGAGgtactgaacagcctgctgtgaatgggtccttgtctgtacacactataatt Alignment from GeneWise CGAGAAAATGTCATTGAATATAAACACTGTTTGATTACGAAGAATGAGAATGGAGAATACAACCTCAGCGGGACTAAGAGGAACTTCAGTAACCTTAAGGACCTTTTGAATTGCTACCAGATGGAAACTGTGCGCTCAGACAGTATCATCTTCCAGTTTACCAAATGCTGCCCCCCAAAGCCAAAAG gggacccacatagtgagactggtttgctagagtcctgtgtcctttggcagCGTGAAAACATTATTAAATACAAACATTGTCTAATTACAAAGAATGAGAACGGTGAATATAACCTCAGTGGCATAAAAAGGAACTTTGGTAATCTCAAGGATCTTTTGAATTGCTATCAGATGGAAACTGTGAGATCAGACAGTATTATTTTCCAGTTTACTAAATGCTGCCCACCTAAGCCCAGAGgtactgaacagcctgctgtgaatgggtccttgtctgtacacactataatt #### Jak2_ID6235_11 --> 0 - 0 Original Alignment AATGAAAGTCTTGGCCAAGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGAGATTATGGTCAACTGCACAAAACGGAAGTTCTTTTGAAAGTCCTAGATAAAGCACATAGGAACTATTCAGAG ttcccagtcattgggctcttcttgtttctgatttctctcttgcttcttagAATAAGAGTCTTGGACATGGTACTTTCATAAAAATATTTAAAGGTGTAAGAAGGGAAGTTGGGGATTATGGTCAGTTGCACAGAACAGAAGTTCTTTTGAAAGTCCTAGATAAAGGACACAGGAACTATTCAGAAgtaaggttggttcaattgttagtggacttgctacagagatttgatatgta Alignment from CESAR AATGAAAGTCTTGGCCAAGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGAGATTATGGTCAACTGCACAAAACGGAAGTTCTTTTGAAAGTCCTAGATAAAGCACATAGGAACTATTCAGAG ttcccagtcattgggctcttcttgtttctgatttctctcttgcttcttagAATAAGAGTCTTGGACATGGTACTTTCATAAAAATATTTAAAGGTGTAAGAAGGGAAGTTGGGGATTATGGTCAGTTGCACAGAACAGAAGTTCTTTTGAAAGTCCTAGATAAAGGACACAGGAACTATTCAGAAgtaaggttggttcaattgttagtggacttgctacagagatttgatatgta Alignment from Spaln_aa2Genome AATGAAAGTCTTGGCCAAGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGAGATTATGGTCAACTGCACAAAACGGAAGTTCTTTTGAAAGTCCTAGATAAAGCACATAGGAACTATTCAGAG ttcccagtcattgggctcttcttgtttctgatttctctcttgcttcttagAATAAGAGTCTTGGACATGGTACTTTCATAAAAATATTTAAAGGTGTAAGAAGGGAAGTTGGGGATTATGGTCAGTTGCACAGAACAGAAGTTCTTTTGAAAGTCCTAGATAAAGGACACAGGAACTATTCAGAAgtaaggttggttcaattgttagtggacttgctacagagatttgatatgta Alignment from Spaln_nt2Genome AATGAAAGTCTTGGCCAAGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGAGATTATGGTCAACTGCACAAAACGGAAGTTCTTTTGAAAGTCCTAGATAAAGCACATAGGAACTATTCAGAG ttcccagtcattgggctcttcttgtttctgatttctctcttgcttcttagAATAAGAGTCTTGGACATGGTACTTTCATAAAAATATTTAAAGGTGTAAGAAGGGAAGTTGGGGATTATGGTCAGTTGCACAGAACAGAAGTTCTTTTGAAAGTCCTAGATAAAGGACACAGGAACTATTCAGAAgtaaggttggttcaattgttagtggacttgctacagagatttgatatgta Alignment from Pairagon AATGAAAGTCTTGGCCAAGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGAGATTATGGTCAACTGCACAAAACGGAAGTTCTTTTGAAAGTCCTAGATAAAGCACATAGGAACTATTCAGAG ttcccagtcattgggctcttcttgtttctgatttctctcttgcttcttagAATAAGAGTCTTGGACATGGTACTTTCATAAAAATATTTAAAGGTGTAAGAAGGGAAGTTGGGGATTATGGTCAGTTGCACAGAACAGAAGTTCTTTTGAAAGTCCTAGATAAAGGACACAGGAACTATTCAGAAgtaaggttggttcaattgttagtggacttgctacagagatttgatatgta Alignment from Exonerate_protein2genome AATGAAAGTCTTGGCCAAGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGAGATTATGGTCAACTGCACAAAACGGAAGTTCTTTTGAAAGTCCTAGATAAAGCACATAGGAACTATTCAGAG ttcccagtcattgggctcttcttgtttctgatttctctcttgcttcttagAATAAGAGTCTTGGACATGGTACTTTCATAAAAATATTTAAAGGTGTAAGAAGGGAAGTTGGGGATTATGGTCAGTTGCACAGAACAGAAGTTCTTTTGAAAGTCCTAGATAAAGGACACAGGAACTATTCAGAAgtaaggttggttcaattgttagtggacttgctacagagatttgatatgta Alignment from Exonerate_coding2genome AATGAAAGTCTTGGCCAAGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGAGATTATGGTCAACTGCACAAAACGGAAGTTCTTTTGAAAGTCCTAGATAAAGCACATAGGAACTATTCAGAG ttcccagtcattgggctcttcttgtttctgatttctctcttgcttcttagAATAAGAGTCTTGGACATGGTACTTTCATAAAAATATTTAAAGGTGTAAGAAGGGAAGTTGGGGATTATGGTCAGTTGCACAGAACAGAAGTTCTTTTGAAAGTCCTAGATAAAGGACACAGGAACTATTCAGAAgtaaggttggttcaattgttagtggacttgctacagagatttgatatgta Alignment from GeneWise AATGAAAGTCTTGGCCAAGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGAGATTATGGTCAACTGCACAAAACGGAAGTTCTTTTGAAAGTCCTAGATAAAGCACATAGGAACTATTCAGAG ttcccagtcattgggctcttcttgtttctgatttctctcttgcttcttagAATAAGAGTCTTGGACATGGTACTTTCATAAAAATATTTAAAGGTGTAAGAAGGGAAGTTGGGGATTATGGTCAGTTGCACAGAACAGAAGTTCTTTTGAAAGTCCTAGATAAAGGACACAGGAACTATTCAGAAgtaaggttggttcaattgttagtggacttgctacagagatttgatatgta #### Jak2_ID6236_12 --> 0 - 1 Original Alignment TCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGTGTCTGTGTCTGTGGAGAGGAGa tcactgaaacttatgctgtaattattcacttctctggtttttgtgcacagTCTTTCTTTGAAGCAGCAAGTATGATGACGCAGCTTTCTCATGAACATTTGGTTTTAAATTATGGTGTCTGTGTTTGTGGCGAGGAGagtgagaatgcaggagacagtagacaccattcagcatgtgcttagacgaag Alignment from CESAR TCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGTGTCTGTGTCTGTGGAGAGGAGa tcactgaaacttatgctgtaattattcacttctctggtttttgtgcacagTCTTTCTTTGAAGCAGCAAGTATGATGACGCAGCTTTCTCATGAACATTTGGTTTTAAATTATGGTGTCTGTGTTTGTGGCGAGGAGagtgagaatgcaggagacagtagacaccattcagcatgtgcttagacgaag Alignment from Spaln_aa2Genome TCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGTGTCTGTGTCTGTGGAGAGGAGA tcactgaaacttatgctgtaattattcacttctctggtttttgtgcacagTCTTTCTTTGAAGCAGCAAGTATGATGACGCAGCTTTCTCATGAACATTTGGTTTTAAATTATGGTGTCTGTGTTTGTGGCGAGGAGAgtgagaatgcaggagacagtagacaccattcagcatgtgcttagacgaag Alignment from Spaln_nt2Genome TCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGTGTCTGTGTCTGTGGAGAGGAGA tcactgaaacttatgctgtaattattcacttctctggtttttgtgcacagTCTTTCTTTGAAGCAGCAAGTATGATGACGCAGCTTTCTCATGAACATTTGGTTTTAAATTATGGTGTCTGTGTTTGTGGCGAGGAGAgtgagaatgcaggagacagtagacaccattcagcatgtgcttagacgaag Alignment from Pairagon TCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGTGTCTGTGTCTGTGGAGAGGAGA tcactgaaacttatgctgtaattattcacttctctggtttttgtgcacagTCTTTCTTTGAAGCAGCAAGTATGATGACGCAGCTTTCTCATGAACATTTGGTTTTAAATTATGGTGTCTGTGTTTGTGGCGAGGAGAgtgagaatgcaggagacagtagacaccattcagcatgtgcttagacgaag Alignment from Exonerate_protein2genome TCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGTGTCTGTGTCTGTGGAGAGGAGA tcactgaaacttatgctgtaattattcacttctctggtttttgtgcacagTCTTTCTTTGAAGCAGCAAGTATGATGACGCAGCTTTCTCATGAACATTTGGTTTTAAATTATGGTGTCTGTGTTTGTGGCGAGGAGAgtgagaatgcaggagacagtagacaccattcagcatgtgcttagacgaag Alignment from Exonerate_coding2genome TCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGTGTCTGTGTCTGTGGAGAGGAGA tcactgaaacttatgctgtaattattcacttctctggtttttgtgcacagTCTTTCTTTGAAGCAGCAAGTATGATGACGCAGCTTTCTCATGAACATTTGGTTTTAAATTATGGTGTCTGTGTTTGTGGCGAGGAGAgtgagaatgcaggagacagtagacaccattcagcatgtgcttagacgaag Alignment from GeneWise TCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGTGTCTGTGTCTGTGGAGAGGAGA tcactgaaacttatgctgtaattattcacttctctggtttttgtgcacagTCTTTCTTTGAAGCAGCAAGTATGATGACGCAGCTTTCTCATGAACATTTGGTTTTAAATTATGGTGTCTGTGTTTGTGGCGAGGAGAgtgagaatgcaggagacagtagacaccattcagcatgtgcttagacgaag #### Jak2_ID6242_18 --> 0 - 1 Original Alignment GGTAACTTCGGGAGTGTGGAGATGTGCCGCTATGACCCGCTGCAGGACAACACTGGCGAGGTGGTCGCTGTGAAGAAACTCCAGCACAGCACTGAAGAGCACCTCCGAGACTTTGAGAGGGAGATCGAGATCCTGAAATCCTTGCAGCATGACAACATCGTCAAGTACAAGGGAGTGTGCTACAGTGCGg gactattggcaatccttaacgtccagctcctctttctacttgacttgtagGGTAACTATGGAAGTGTGGAGATGTGCCGCTATGACCCACTGCAGGATAATGCAGGTGAAGTGGTAGCTGTAAAGAAACTCCAACACAGGCCTGAAGAGCACCTCCAGGACTTTGAGAGGGAGATAGAAATCCTCAAATCCTTGCAGCATGACAACATTGTCAAGTATAGGGGAGTGTGTTACAGTGCAggtaaggtgcataaccttgggtcatttagttttcaaagatctaaaattgac Alignment from CESAR GGTAACTTCGGGAGTGTGGAGATGTGCCGCTATGACCCGCTGCAGGACAACACTGGCGAGGTGGTCGCTGTGAAGAAACTCCAGCACAGCACTGAAGAGCACCTCCGAGACTTTGAGAGGGAGATCGAGATCCTGAAATCCTTGCAGCATGACAACATCGTCAAGTACAAGGGAGTGTGCTACAGTGCGg gactattggcaatccttaacgtccagctcctctttctacttgacttgtagGGTAACTATGGAAGTGTGGAGATGTGCCGCTATGACCCACTGCAGGATAATGCAGGTGAAGTGGTAGCTGTAAAGAAACTCCAACACAGGCCTGAAGAGCACCTCCAGGACTTTGAGAGGGAGATAGAAATCCTCAAATCCTTGCAGCATGACAACATTGTCAAGTATAGGGGAGTGTGTTACAGTGCAggtaaggtgcataaccttgggtcatttagttttcaaagatctaaaattgac Alignment from Spaln_aa2Genome GGTAACTTCGGGAGTGTGGAGATGTGCCGCTATGACCCGCTGCAGGACAACACTGGCGAGGTGGTCGCTGTGAAGAAACTCCAGCACAGCACTGAAGAGCACCTCCGAGACTTTGAGAGGGAGATCGAGATCCTGAAATCCTTGCAGCATGACAACATCGTCAAGTACAAGGGAGTGTGCTACAGTGCGG gactattggcaatccttaacgtccagctcctctttctacttgacttgtagGGTAACTATGGAAGTGTGGAGATGTGCCGCTATGACCCACTGCAGGATAATGCAGGTGAAGTGGTAGCTGTAAAGAAACTCCAACACAGGCCTGAAGAGCACCTCCAGGACTTTGAGAGGGAGATAGAAATCCTCAAATCCTTGCAGCATGACAACATTGTCAAGTATAGGGGAGTGTGTTACAGTGCAGgtaaggtgcataaccttgggtcatttagttttcaaagatctaaaattgac Alignment from Spaln_nt2Genome GGTAACTTCGGGAGTGTGGAGATGTGCCGCTATGACCCGCTGCAGGACAACACTGGCGAGGTGGTCGCTGTGAAGAAACTCCAGCACAGCACTGAAGAGCACCTCCGAGACTTTGAGAGGGAGATCGAGATCCTGAAATCCTTGCAGCATGACAACATCGTCAAGTACAAGGGAGTGTGCTACAGTGCGG gactattggcaatccttaacgtccagctcctctttctacttgacttgtagGGTAACTATGGAAGTGTGGAGATGTGCCGCTATGACCCACTGCAGGATAATGCAGGTGAAGTGGTAGCTGTAAAGAAACTCCAACACAGGCCTGAAGAGCACCTCCAGGACTTTGAGAGGGAGATAGAAATCCTCAAATCCTTGCAGCATGACAACATTGTCAAGTATAGGGGAGTGTGTTACAGTGCAGgtaaggtgcataaccttgggtcatttagttttcaaagatctaaaattgac Alignment from Pairagon GGTAACTTCGGGAGTGTGGAGATGTGCCGCTATGACCCGCTGCAGGACAACACTGGCGAGGTGGTCGCTGTGAAGAAACTCCAGCACAGCACTGAAGAGCACCTCCGAGACTTTGAGAGGGAGATCGAGATCCTGAAATCCTTGCAGCATGACAACATCGTCAAGTACAAGGGAGTGTGCTACAGTGCGG gactattggcaatccttaacgtccagctcctctttctacttgacttgtagGGTAACTATGGAAGTGTGGAGATGTGCCGCTATGACCCACTGCAGGATAATGCAGGTGAAGTGGTAGCTGTAAAGAAACTCCAACACAGGCCTGAAGAGCACCTCCAGGACTTTGAGAGGGAGATAGAAATCCTCAAATCCTTGCAGCATGACAACATTGTCAAGTATAGGGGAGTGTGTTACAGTGCAGgtaaggtgcataaccttgggtcatttagttttcaaagatctaaaattgac Alignment from Exonerate_protein2genome GGTAACTTCGGGAGTGTGGAGATGTGCCGCTATGACCCGCTGCAGGACAACACTGGCGAGGTGGTCGCTGTGAAGAAACTCCAGCACAGCACTGAAGAGCACCTCCGAGACTTTGAGAGGGAGATCGAGATCCTGAAATCCTTGCAGCATGACAACATCGTCAAGTACAAGGGAGTGTGCTACAGTGCGG gactattggcaatccttaacgtccagctcctctttctacttgacttgtagGGTAACTATGGAAGTGTGGAGATGTGCCGCTATGACCCACTGCAGGATAATGCAGGTGAAGTGGTAGCTGTAAAGAAACTCCAACACAGGCCTGAAGAGCACCTCCAGGACTTTGAGAGGGAGATAGAAATCCTCAAATCCTTGCAGCATGACAACATTGTCAAGTATAGGGGAGTGTGTTACAGTGCAGgtaaggtgcataaccttgggtcatttagttttcaaagatctaaaattgac Alignment from Exonerate_coding2genome GGTAACTTCGGGAGTGTGGAGATGTGCCGCTATGACCCGCTGCAGGACAACACTGGCGAGGTGGTCGCTGTGAAGAAACTCCAGCACAGCACTGAAGAGCACCTCCGAGACTTTGAGAGGGAGATCGAGATCCTGAAATCCTTGCAGCATGACAACATCGTCAAGTACAAGGGAGTGTGCTACAGTGCGG gactattggcaatccttaacgtccagctcctctttctacttgacttgtagGGTAACTATGGAAGTGTGGAGATGTGCCGCTATGACCCACTGCAGGATAATGCAGGTGAAGTGGTAGCTGTAAAGAAACTCCAACACAGGCCTGAAGAGCACCTCCAGGACTTTGAGAGGGAGATAGAAATCCTCAAATCCTTGCAGCATGACAACATTGTCAAGTATAGGGGAGTGTGTTACAGTGCAGgtaaggtgcataaccttgggtcatttagttttcaaagatctaaaattgac Alignment from GeneWise GGTAACTTCGGGAGTGTGGAGATGTGCCGCTATGACCCGCTGCAGGACAACACTGGCGAGGTGGTCGCTGTGAAGAAACTCCAGCACAGCACTGAAGAGCACCTCCGAGACTTTGAGAGGGAGATCGAGATCCTGAAATCCTTGCAGCATGACAACATCGTCAAGTACAAGGGAGTGTGCTACAGTGCGG gactattggcaatccttaacgtccagctcctctttctacttgacttgtagGGTAACTATGGAAGTGTGGAGATGTGCCGCTATGACCCACTGCAGGATAATGCAGGTGAAGTGGTAGCTGTAAAGAAACTCCAACACAGGCCTGAAGAGCACCTCCAGGACTTTGAGAGGGAGATAGAAATCCTCAAATCCTTGCAGCATGACAACATTGTCAAGTATAGGGGAGTGTGTTACAGTGCAGgtaaggtgcataaccttgggtcatttagttttcaaagatctaaaattgac #### Jak2_ID6244_20 --> 0 - 2 Original Alignment AGATATGCAAG GGCATGGAATATCTTGGTACAAAAAGGTATATCCACAGGGACCTGGCAACAAGGAACATATTGGTGGAAAATGAGAACAGGGTTAAAATAGGAGACTTCGGATTAACCAAAGTCTTGCCGCAGGACAAAGAATACTACAAAGTAAAGGAGCCAGGGGAAAGCCCCATATTCtg AGATATGCAAGgtaagaagcttttgatagaagagaagttgtgctttgcagGGGATGGAGTTCCTAGGTACAAAAAGATATATCCATAGGGACCTGGCAACAAGAAACATATTGGTGGAGAATGAAAACAGGGTTAAAATAGGAGACTTTGGATTAACAAAAGTGCTGCCACAGGACAAGGAATACTACAAGGTAAAAGAGCCAGGAGAGAGCCCCATTTTCtggtatgttgaacatggtggcccctctaaagacagttgtgcctttattagag Alignment from CESAR AGATATGCAAG GGCATGGAATATCTTGGTACAAAAAGGTATATCCACAGGGACCTGGCAACAAGGAACATATTGGTGGAAAATGAGAACAGGGTTAAAATAGGAGACTTCGGATTAACCAAAGTCTTGCCGCAGGACAAAGAATACTACAAAGTAAAGGAGCCAGGGGAAAGCCCCATATTCtg AGATATGCAAGgtagggagcttttgatagaagagaagttgtgctttgcagGGGATGGAGTTCCTAGGTACAAAAAGATATATCCATAGGGACCTGGCAACAAGAAACATATTGGTGGAGAATGAAAACAGGGTTAAAATAGGAGACTTTGGATTAACAAAAGTGCTGCCACAGGACAAGGAATACTACAAGGTAAAAGAGCCAGGAGAGAGCCCCATTTTCtggtatgttgaacatggtggcccctctaaagacagttgtgcctttattagag Alignment from Spaln_aa2Genome AGATATGCAAG GGCATGGAATATCTTGGTACAAAAAGGTATATCCACAGGGACCTGGCAACAAGGAACATATTGGTGGAAAATGAGAACAGGGTTAAAATAGGAGACTTCGGATTAACCAAAGTCTTGCCGCAGGACAAAGAATACTACAAAGTAAAGGAGCCAGGGGAAAGCCCCATATTCTG AGATATGCAAGgtaagaagcttttgatagaagagaagttgtgctttgcagGGGATGGAGTTCCTAGGTACAAAAAGATATATCCATAGGGACCTGGCAACAAGAAACATATTGGTGGAGAATGAAAACAGGGTTAAAATAGGAGACTTTGGATTAACAAAAGTGCTGCCACAGGACAAGGAATACTACAAGGTAAAAGAGCCAGGAGAGAGCCCCATTTTCTGgtatgttgaacatggtggcccctctaaagacagttgtgcctttattagag Alignment from Spaln_nt2Genome AGATATGCAAG GGCATGGAATATCTTGGTACAAAAAGGTATATCCACAGGGACCTGGCAACAAGGAACATATTGGTGGAAAATGAGAACAGGGTTAAAATAGGAGACTTCGGATTAACCAAAGTCTTGCCGCAGGACAAAGAATACTACAAAGTAAAGGAGCCAGGGGAAAGCCCCATATTCTG AGATATGCAAGgtaagaagcttttgatagaagagaagttgtgctttgcagGGGATGGAGTTCCTAGGTACAAAAAGATATATCCATAGGGACCTGGCAACAAGAAACATATTGGTGGAGAATGAAAACAGGGTTAAAATAGGAGACTTTGGATTAACAAAAGTGCTGCCACAGGACAAGGAATACTACAAGGTAAAAGAGCCAGGAGAGAGCCCCATTTTCTGgtatgttgaacatggtggcccctctaaagacagttgtgcctttattagag Alignment from Pairagon AGATATGCAAG GGCATGGAATATCTTGGTACAAAAAGGTATATCCACAGGGACCTGGCAACAAGGAACATATTGGTGGAAAATGAGAACAGGGTTAAAATAGGAGACTTCGGATTAACCAAAGTCTTGCCGCAGGACAAAGAATACTACAAAGTAAAGGAGCCAGGGGAAAGCCCCATATTCTG AGATATGCAAGgtaagaagcttttgatagaagagaagttgtgctttgcagGGGATGGAGTTCCTAGGTACAAAAAGATATATCCATAGGGACCTGGCAACAAGAAACATATTGGTGGAGAATGAAAACAGGGTTAAAATAGGAGACTTTGGATTAACAAAAGTGCTGCCACAGGACAAGGAATACTACAAGGTAAAAGAGCCAGGAGAGAGCCCCATTTTCTGgtatgttgaacatggtggcccctctaaagacagttgtgcctttattagag Alignment from Exonerate_protein2genome AGATATGCAAG GGCATGGAATATCTTGGTACAAAAAGGTATATCCACAGGGACCTGGCAACAAGGAACATATTGGTGGAAAATGAGAACAGGGTTAAAATAGGAGACTTCGGATTAACCAAAGTCTTGCCGCAGGACAAAGAATACTACAAAGTAAAGGAGCCAGGGGAAAGCCCCATATTCTG AGATATGCAAGgtaagaagcttttgatagaagagaagttgtgctttgcagGGGATGGAGTTCCTAGGTACAAAAAGATATATCCATAGGGACCTGGCAACAAGAAACATATTGGTGGAGAATGAAAACAGGGTTAAAATAGGAGACTTTGGATTAACAAAAGTGCTGCCACAGGACAAGGAATACTACAAGGTAAAAGAGCCAGGAGAGAGCCCCATTTTCTGgtatgttgaacatggtggcccctctaaagacagttgtgcctttattagag Alignment from Exonerate_coding2genome AGATATGCAAG GGCATGGAATATCTTGGTACAAAAAGGTATATCCACAGGGACCTGGCAACAAGGAACATATTGGTGGAAAATGAGAACAGGGTTAAAATAGGAGACTTCGGATTAACCAAAGTCTTGCCGCAGGACAAAGAATACTACAAAGTAAAGGAGCCAGGGGAAAGCCCCATATTCTG AGATATGCAAGgtaagaagcttttgatagaagagaagttgtgctttgcagGGGATGGAGTTCCTAGGTACAAAAAGATATATCCATAGGGACCTGGCAACAAGAAACATATTGGTGGAGAATGAAAACAGGGTTAAAATAGGAGACTTTGGATTAACAAAAGTGCTGCCACAGGACAAGGAATACTACAAGGTAAAAGAGCCAGGAGAGAGCCCCATTTTCTGgtatgttgaacatggtggcccctctaaagacagttgtgcctttattagag Alignment from GeneWise AGATATGCAAG GGCATGGAATATCTTGGTACAAAAAGGTATATCCACAGGGACCTGGCAACAAGGAACATATTGGTGGAAAATGAGAACAGGGTTAAAATAGGAGACTTCGGATTAACCAAAGTCTTGCCGCAGGACAAAGAATACTACAAAGTAAAGGAGCCAGGGGAAAGCCCCATATTCTG AGATATGCAAGgtaagaagcttttgatagaagagaagttgtgctttgcagGGGATGGAGTTCCTAGGTACAAAAAGATATATCCATAGGGACCTGGCAACAAGAAACATATTGGTGGAGAATGAAAACAGGGTTAAAATAGGAGACTTTGGATTAACAAAAGTGCTGCCACAGGACAAGGAATACTACAAGGTAAAAGAGCCAGGAGAGAGCCCCATTTTCTGgtatgttgaacatggtggcccctctaaagacagttgtgcctttattagag #### Jak2_ID6245_21 --> 1 - 0 Original Alignment gTACGCACCTGAATCCTTGACGGAGAGCAAGTTTTCTGTGGCCTCAGATGTGTGGAGCTTTGGAGTGGTTCTATACGAACTTTTCACATACATCGAGAAGAGTAAAAGTCCACCCGTG taagtttgctgtatgctcaaatgtgtggacatgcttatctcctcctgcaggTATGCACCTGAATCCTTAACAGAGAGCAAGTTTTCTGTGGCCTCAGATGTGTGGAGCTTTGGAGTAGTTCTATATGAACTTTTCACATACATTGAGAAGAGTAAAAGTCCACCCGTGgtgagtaaatcacttagcaaccctgtccttgactagtgaaaatatactcc Alignment from CESAR gTACGCACCTGAATCCTTGACGGAGAGCAAGTTTTCTGTGGCCTCAGATGTGTGGAGCTTTGGAGTGGTTCTATACGAACTTTTCACATACATCGAGAAGAGTAAAAGTCCACCCGTG taagtttgctgtatgctcaaatgtgtggacatgcttatctcctcctgcaggTATGCACCTGAATCCTTAACAGAGAGCAAGTTTTCTGTGGCCTCAGATGTGTGGAGCTTTGGAGTAGTTCTATATGAACTTTTCACATACATTGAGAAGAGTAAAAGTCCACCCGTGgtgagtaaatcacttagcaaccctgtccttgactagtgaaaatatactcc Alignment from Spaln_aa2Genome GTACGCACCTGAATCCTTGACGGAGAGCAAGTTTTCTGTGGCCTCAGATGTGTGGAGCTTTGGAGTGGTTCTATACGAACTTTTCACATACATCGAGAAGAGTAAAAGTCCACCCGTG taagtttgctgtatgctcaaatgtgtggacatgcttatctcctcctgcagGTATGCACCTGAATCCTTAACAGAGAGCAAGTTTTCTGTGGCCTCAGATGTGTGGAGCTTTGGAGTAGTTCTATATGAACTTTTCACATACATTGAGAAGAGTAAAAGTCCACCCGTGgtgagtaaatcacttagcaaccctgtccttgactagtgaaaatatactcc Alignment from Spaln_nt2Genome GTACGCACCTGAATCCTTGACGGAGAGCAAGTTTTCTGTGGCCTCAGATGTGTGGAGCTTTGGAGTGGTTCTATACGAACTTTTCACATACATCGAGAAGAGTAAAAGTCCACCCGTG taagtttgctgtatgctcaaatgtgtggacatgcttatctcctcctgcagGTATGCACCTGAATCCTTAACAGAGAGCAAGTTTTCTGTGGCCTCAGATGTGTGGAGCTTTGGAGTAGTTCTATATGAACTTTTCACATACATTGAGAAGAGTAAAAGTCCACCCGTGgtgagtaaatcacttagcaaccctgtccttgactagtgaaaatatactcc Alignment from Pairagon GTACGCACCTGAATCCTTGACGGAGAGCAAGTTTTCTGTGGCCTCAGATGTGTGGAGCTTTGGAGTGGTTCTATACGAACTTTTCACATACATCGAGAAGAGTAAAAGTCCACCCGTG taagtttgctgtatgctcaaatgtgtggacatgcttatctcctcctgcagGTATGCACCTGAATCCTTAACAGAGAGCAAGTTTTCTGTGGCCTCAGATGTGTGGAGCTTTGGAGTAGTTCTATATGAACTTTTCACATACATTGAGAAGAGTAAAAGTCCACCCGTGgtgagtaaatcacttagcaaccctgtccttgactagtgaaaatatactcc Alignment from Exonerate_protein2genome GTACGCACCTGAATCCTTGACGGAGAGCAAGTTTTCTGTGGCCTCAGATGTGTGGAGCTTTGGAGTGGTTCTATACGAACTTTTCACATACATCGAGAAGAGTAAAAGTCCACCCGTG taagtttgctgtatgctcaaatgtgtggacatgcttatctcctcctgcagGTATGCACCTGAATCCTTAACAGAGAGCAAGTTTTCTGTGGCCTCAGATGTGTGGAGCTTTGGAGTAGTTCTATATGAACTTTTCACATACATTGAGAAGAGTAAAAGTCCACCCGTGgtgagtaaatcacttagcaaccctgtccttgactagtgaaaatatactcc Alignment from Exonerate_coding2genome GTACGCACCTGAATCCTTGACGGAGAGCAAGTTTTCTGTGGCCTCAGATGTGTGGAGCTTTGGAGTGGTTCTATACGAACTTTTCACATACATCGAGAAGAGTAAAAGTCCACCCGTG taagtttgctgtatgctcaaatgtgtggacatgcttatctcctcctgcagGTATGCACCTGAATCCTTAACAGAGAGCAAGTTTTCTGTGGCCTCAGATGTGTGGAGCTTTGGAGTAGTTCTATATGAACTTTTCACATACATTGAGAAGAGTAAAAGTCCACCCGTGgtgagtaaatcacttagcaaccctgtccttgactagtgaaaatatactcc Alignment from GeneWise GTACGCACCTGAATCCTTGACGGAGAGCAAGTTTTCTGTGGCCTCAGATGTGTGGAGCTTTGGAGTGGTTCTATACGAACTTTTCACATACATCGAGAAGAGTAAAAGTCCACCCGTG taagtttgctgtatgctcaaatgtgtggacatgcttatctcctcctgcagGTATGCACCTGAATCCTTAACAGAGAGCAAGTTTTCTGTGGCCTCAGATGTGTGGAGCTTTGGAGTAGTTCTATATGAACTTTTCACATACATTGAGAAGAGTAAAAGTCCACCCGTGgtgagtaaatcacttagcaaccctgtccttgactagtgaaaatatactcc #### Kank1_ID5459_5 --> 1 - 2 Original Alignment gTATGAGACAACTTCAAGTGACGAATCCAGCTCGGATGGAAGCTCTTCTTCCGAGTCAGATGACGAGTGTGAC---ACCATTGGGTACCCTCCCGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCACGACACTCGGGGAATGGCGGAAGGGCACCACGCAGTTAATATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTTCCAGAATGTGAGCCTGAGAAGGAGGAAATCAGAGAGag ccaatacaagagtttcccatacctattgacctatattttatatgtttcagtTACAAGATGACGTCTACTGATGAATCAACTGTAGATGGCAGCTCATTTTCCCAGTCAGATGGAGAATGTGACATCACCATTGGGTACCCTCCGCAAGAAGAGGAGGAGGAGGAGGAGAAGGACCATGACAATCAAGGGAAGGCAGAGGGGCATCATGTGGTCAACATTGAC---TTCAAATCTGCCAGGGTGGAGGATGATGTGCAGGTGCCAGAATGTGAGCCAGAGAAAGAGCAACTCAGGGAGaggtaggttgcaccacacccctgtaagatggagcaagtcccagcatgtatgt Alignment from CESAR gTATGAGACAACTTCAAGTGACGAATCCAGCTCGGATGGAAGCTCTTCTTCCGAGTCAGATGACGAGTGTGAC---ACCATTGGGTACCCTCCCGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCACGACACTCGGGGAATGGCGGAAGGGCACCACGCAGTTAATATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTTCCAGAATGTGAGCCTGAGAAGGAGGAAATCAGAGAGag ccaatacaagagtttcccatacctattgacctatattttatatgtttcagtTACAAGATGACGTCTACTGATGAATCAACTGTAGATGGCAGCTCATTTTCCCAGTCAGATGGAGAATGTGACATCACCATTGGGTACCCTCCGCAAGAAGAGGAGGAGGAGGAGGAGAAGGACCATGACAATCAAGGGAAGGCAGAGGGGCATCATGTGGTCAACATTGAC---TTCAAATCTGCCAGGGTGGAGGATGATGTGCAGGTGCCAGAATGTGAGCCAGAGAAAGAGCAACTCAGGGAGaggtaggttgcaccacacccctgtaagatggagcaagtcccagcatgtatgt Alignment from Spaln_aa2Genome GTATGAGACAACTTCAAGTGACGAATCCAGCTCGGATGGAAGCTCTTCTTCCGAGTCAGATGACGAGTGTGAC---ACCATTGGGTACCCTCCCGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCACGACACTCGGGGAATGGCGGAAGGGCACCACGCAGTTAATATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTTCCAGAATGTGAGCCTGAGAAGGAGGAAATCAGAGAGAG ccaatacaagagtttcccatacctattgacctatattttatatgtttcagTTACAAGATGACGTCTACTGATGAATCAACTGTAGATGGCAGCTCATTTTCCCAGTCAGATGGAGAATGTGACATCACCATTGGGTACCCTCCGCAAGAAGAGGAGGAGGAGGAGGAGAAGGACCATGACAATCAAGGGAAGGCAGAGGGGCATCATGTGGTCAACATTGAC---TTCAAATCTGCCAGGGTGGAGGATGATGTGCAGGTGCCAGAATGTGAGCCAGAGAAAGAGCAACTCAGGGAGAGgtaggttgcaccacacccctgtaagatggagcaagtcccagcatgtatgt Alignment from Spaln_nt2Genome GTATGAGACAACTTCAAGTGACGAATCCAGCTCGGATGGAAGCTCTTCTTCCGAGTCAGATGACGAGTGTGACA---CCATTGGGTACCCTCCCGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCACGACACTCGGGGAATGGCGGAAGGGCACCACGCAGTTAATATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTTCCAGAATGTGAGCCTGAGAAGGAGGAAATCAGAGAGAG ccaatacaagagtttcccatacctattgacctatattttatatgtttcagTTACAAGATGACGTCTACTGATGAATCAACTGTAGATGGCAGCTCATTTTCCCAGTCAGATGGAGAATGTGACATCACCATTGGGTACCCTCCGCAAGAAGAGGAGGAGGAGGAGGAGAAGGACCATGACAATCAAGGGAAGGCAGAGGGGCATCATGTGGTCAACATTGA---CTTCAAATCTGCCAGGGTGGAGGATGATGTGCAGGTGCCAGAATGTGAGCCAGAGAAAGAGCAACTCAGGGAGAGgtaggttgcaccacacccctgtaagatggagcaagtcccagcatgtatgt Alignment from Pairagon GTATGAGACAACTTCAAGTGACGAATCCAGCTCGGATGGAAGCTCTTCTTCCGAGTCAGATGACGAGTGTGA---CACCATTGGGTACCCTCCCGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCACGACACTCGGGGAATGGCGGAAGGGCACCACGCAGTTAATATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTTCCAGAATGTGAGCCTGAGAAGGAGGAAATCAGAGAGAG ccaatacaagagtttcccatacctattgacctatattttatatgtttcagttacaagatgacgtctactgatgaatcaactgtag-----------------------------------ATGGCAGCTCATTTTCCCAGTCAGATGGAGAATGTGACATCACCATTGGGTACCCTCCGCAAGAAGAGGAGGAGGAGGAGGAGAAGGACCATGACAATCAAGGGAAGGCAGAGGGGCATCATGTGGTCAACATTGA---CTTCAAATCTGCCAGGGTGGAGGATGATGTGCAGGTGCCAGAATGTGAGCCAGAGAAAGAGCAACTCAGGGAGAGgtaggttgcaccacacccctgtaagatggagcaagtcccagcatgtatgt Alignment from Exonerate_protein2genome GTATGAGACAACTTCAAGTGACGAATCCAGCTCGGATGGAAGCTCTTCTTCCGAGTCAGATGACGAGTGTGAC---ACCATTGGGTACCCTCCCGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCACGACACTCGGGGAATGGCGGAAGGGCACCACGCAGTTAATATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTTCCAGAATGTGAGCCTGAGAAGGAGGAAATCAGAGAGAG ccaatacaagagtttcccatacctattgacctatattttatatgtttcagTTACAAGATGACGTCTACTGATGAATCAACTGTAGATGGCAGCTCATTTTCCCAGTCAGATGGAGAATGTGACATCACCATTGGGTACCCTCCGCAAGAAGAGGAGGAGGAGGAGGAGAAGGACCATGACAATCAAGGGAAGGCAGAGGGGCATCATGTGGTCAACATTGAC---TTCAAATCTGCCAGGGTGGAGGATGATGTGCAGGTGCCAGAATGTGAGCCAGAGAAAGAGCAACTCAGGGAGAGgtaggttgcaccacacccctgtaagatggagcaagtcccagcatgtatgt Alignment from Exonerate_coding2genome GTATGAGACAACTTCAAGTGACGAATCCAGCTCGGATGGAAGCTCTTCTTCCGAGTCAGATGACGAGTGTGAC---ACCATTGGGTACCCTCCCGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCACGACACTCGGGGAATGGCGGAAGGGCACCACGCAGTTAATATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTTCCAGAATGTGAGCCTGAGAAGGAGGAAATCAGAGAGAG ccaatacaagagtttcccatacctattgacctatattttatatgtttcagTTACAAGATGACGTCTACTGATGAATCAACTGTAGATGGCAGCTCATTTTCCCAGTCAGATGGAGAATGTGACATCACCATTGGGTACCCTCCGCAAGAAGAGGAGGAGGAGGAGGAGAAGGACCATGACAATCAAGGGAAGGCAGAGGGGCATCATGTGGTCAACATTGAC---TTCAAATCTGCCAGGGTGGAGGATGATGTGCAGGTGCCAGAATGTGAGCCAGAGAAAGAGCAACTCAGGGAGAGgtaggttgcaccacacccctgtaagatggagcaagtcccagcatgtatgt Alignment from GeneWise GTATGAGACAACTTCAAGTGACGAATCCAGCTCGGATGGAAGCTCTTCTTCCGAGTCAGATGACGAGTGTGAC---ACCATTGGGTACCCTCCCGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCACGACACTCGGGGAATGGCGGAAGGGCACCACGCAGTTAATATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTTCCAGAATGTGAGCCTGAGAAGGAGGAAATCAGAGAGAG ccaatacaagagtttcccatacctattgacctatattttatatgtttcagTTACAAGATGACGTCTACTGATGAATCAACTGTAGATGGCAGCTCATTTTCCCAGTCAGATGGAGAATGTGACATCACCATTGGGTACCCTCCGCAAGAAGAGGAGGAGGAGGAGGAGAAGGACCATGACAATCAAGGGAAGGCAGAGGGGCATCATGTGGTCAACATTGAC---TTCAAATCTGCCAGGGTGGAGGATGATGTGCAGGTGCCAGAATGTGAGCCAGAGAAAGAGCAACTCAGGGAGAGgtaggttgcaccacacccctgtaagatggagcaagtcccagcatgtatgt #### Kank1_ID5463_9 --> 0 - 0 Original Alignment GCGGGACAGACGGCCCTCATGCTAGCTGTCAGTCACGGGCGGATAGACATGGTGAAGGGCCTGCTGGCCTGTGGAGCTGATGTCAATATCCAGGACGACGAGGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACAAT ctattagtcataggtcagattggttgttcctgtaccccttatccccacagCCAGGACAGACACCCCTTATGCTAGCTGTGACCCATGGGCGAACAGAG------AAGGGCCTCCTAGCTTGTGGTGCTGATGTCAATATTGAGGAGGATGAAGGCTTCACAAGCCTAATGTGCTCGGGTGAACATGGGGATGTGGAGATTGTG---TTGCTGCTGGCTCAAGAGGGGTGTAATGGCCAATTGGAGGATAATgtctcattacttcctgcgggtgtgatgcggcatcagctgctccattctcc Alignment from CESAR GCGGGACAGACGGCCCTCATGCTAGCTGTCAGTCACGGGCGGATAGACATGGTGAAGGGCCTGCTGGCCTGTGGAGCTGATGTCAATATCCAGGACGACGAGGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACAAT ctattagtcataggtcagattggttgttcctgtaccccttatccccacagCCAGGACAGACACCCCTTATGCTAGCTGTGACCCATGGGCGAACAGAG------AAGGGCCTCCTAGCTTGTGGTGCTGATGTCAATATTGAGGAGGATGAAGGCTTCACAAGCCTAATGTGCTCGGGTGAACATGGGGATGTGGAGATTGTG---TTGCTGCTGGCTCAAGAGGGGTGTAATGGCCAATTGGAGGATAATgtctcattacttcctgcgggtgtgatgcggcatcagctgctccattctcc Alignment from Spaln_aa2Genome GCGGGACAGACGGCCCTCATGCTAGCTGTCAGTCACGGGCGGATAGACATGGTGAAGGGCCTGCTGGCCTGTGGAGCTGATGTCAATATCCAGGACGACGAGGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACAAT ctattagtcataggtcagattggttgttcctgtaccccttatccccacagCCAGGACAGACACCCCTTATGCTAGCTGTGACCCATGGGCGAACAGAG------AAGGGCCTCCTAGCTTGTGGTGCTGATGTCAATATTGAGGAGGATGAAGGCTTCACAAGCCTAATGTGCTCGGGTGAACATGGGGATGTGGAGATTGTG---TTGCTGCTGGCTCAAGAGGGGTGTAATGGCCAATTGGAGGATAATgtctcattacttcctgcgggtgtgatgcggcatcagctgctccattctcc Alignment from Spaln_nt2Genome GCGGGACAGACGGCCCTCATGCTAGCTGTCAGTCACGGGCGGATAGACATGGTGAAGGGCCTGCTGGCCTGTGGAGCTGATGTCAATATCCAGGACGACGAGGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACAAT ctattagtcataggtcagattggttgttcctgtaccccttatccccacagCCAGGACAGACACCCCTTATGCTAGCTGTGACCCATGGGCGAACAGA------GAAGGGCCTCCTAGCTTGTGGTGCTGATGTCAATATTGAGGAGGATGAAGGCTTCACAAGCCTAATGTGCTCGGGTGAACATGGGGATGTGGAGATTGT---GTTGCTGCTGGCTCAAGAGGGGTGTAATGGCCAATTGGAGGATAATgtctcattacttcctgcgggtgtgatgcggcatcagctgctccattctcc Alignment from Pairagon GCGGGACAGACGGCCCTCATGCTAGCTGTCAGTCACGGGCGGATAGACATGGTGAAGGGCCTGCTGGCCTGTGGAGCTGATGTCAATATCCAGGACGACGAGGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACAAT ctattagtcataggtcagattggttgttcctgtaccccttatccccacagCCAGGACAGACACCCCTTATGCTAGCTGTGACCCATGGGCGAACAGA------GAAGGGCCTCCTAGCTTGTGGTGCTGATGTCAATATTGAGGAGGATGAAGGCTTCACAAGCCTAATGTGCTCGGGTGAACATGGGGATGTGGAGATTGT---GTTGCTGCTGGCTCAAGAGGGGTGTAATGGCCAATTGGAGGATAATgtctcattacttcctgcgggtgtgatgcggcatcagctgctccattctcc Alignment from Exonerate_protein2genome GCGGGACAGACGGCCCTCATGCTAGCTGTCAGTCACGGGCGGATAGACATGGTGAAGGGCCTGCTGGCCTGTGGAGCTGATGTCAATATCCAGGACGACGAGGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACAAT ctattagtcataggtcagattggttgttcctgtaccccttatccccacagCCAGGACAGACACCCCTTATGCTAGCTGTGACCCATGGGCGAACAGAG------AAGGGCCTCCTAGCTTGTGGTGCTGATGTCAATATTGAGGAGGATGAAGGCTTCACAAGCCTAATGTGCTCGGGTGAACATGGGGATGTGGAGATTGTG---TTGCTGCTGGCTCAAGAGGGGTGTAATGGCCAATTGGAGGATAATgtctcattacttcctgcgggtgtgatgcggcatcagctgctccattctcc Alignment from Exonerate_coding2genome GCGGGACAGACGGCCCTCATGCTAGCTGTCAGTCACGGGCGGATAGACATGGTGAAGGGCCTGCTGGCCTGTGGAGCTGATGTCAATATCCAGGACGACGAGGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACAAT ctattagtcataggtcagattggttgttcctgtaccccttatccccacagCCAGGACAGACACCCCTTATGCTAGCTGTGACCCATGGGCGAACAGAG------AAGGGCCTCCTAGCTTGTGGTGCTGATGTCAATATTGAGGAGGATGAAGGCTTCACAAGCCTAATGTGCTCGGGTGAACATGGGGATGTGGAGATTGTG---TTGCTGCTGGCTCAAGAGGGGTGTAATGGCCAATTGGAGGATAATgtctcattacttcctgcgggtgtgatgcggcatcagctgctccattctcc Alignment from GeneWise GCGGGACAGACGGCCCTCATGCTAGCTGTCAGTCACGGGCGGATAGACATGGTGAAGGGCCTGCTGGCCTGTGGAGCTGATGTCAATATCCAGGACGACGAGGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACAAT ctattagtcataggtcagattggttgttcctgtaccccttatccccacagCCAGGACAGACACCCCTTATGCTAGCTGTGACCCATGGGCGAACAGAG------AAGGGCCTCCTAGCTTGTGGTGCTGATGTCAATATTGAGGAGGATGAAGGCTTCACAAGCCTAATGTGCTCGGGTGAACATGGGGATGTGGAGATTGTG---TTGCTGCTGGCTCAAGAGGGGTGTAATGGCCAATTGGAGGATAATgtctcattacttcctgcgggtgtgatgcggcatcagctgctccattctcc #### Kat5_ID1112_10 --> 0 - 0 Original Alignment AGTTACTCACAAAACCTGTGTCTTCTGGCCAAGTGTTTCCTGGACCACAAAACACTGTACTATGACACTGACCCCTTCCTCTTCTACGTAATGACGGAGTATGACTGCAAAGGTTTCCACATCGTGGGCTACTTCTCCAAG ccagcatagcatagctcctgctcctcaacaaaacattctccccaccctagAGCTACTCCCTAAACTTGTGTCTTCTG------TGTTTCCTGGAGCACAGGTCCCTGTACTATGACACTGACCCCTCTCTCTTTTATGTCATGACGGAATATGAATGCAAAGGCTTCCACATTGTAGGGTACCTCTCAAAGgtactggatcatgtagagagttgcaattacccaccaacctgtattttgct Alignment from CESAR AGTTACTCACAAAACCTGTGTCTTCTGGCCAAGTGTTTCCTGGACCACAAAACACTGTACTATGACACTGACCCCTTCCTCTTCTACGTAATGACGGAGTATGACTGCAAAGGTTTCCACATCGTGGGCTACTTCTCCAAG ccagcatagcatagctcctgctcctcaacaaaacattctccccaccctagAGCTACTCCCTAAACTTGTGTCTTCTG------TGTTTCCTGGAGCACAGGTCCCTGTACTATGACACTGACCCCTCTCTCTTTTATGTCATGACGGAATATGAATGCAAAGGCTTCCACATTGTAGGGTACCTCTCAAAGgtactggatcatgtagagagttgcaattacccaccaacctgttggccatg Alignment from Spaln_aa2Genome AGTTACTCACAAAACCTGTGTCTTCTGGCCAAGTGTTTCCTGGACCACAAAACACTGTACTATGACACTGACCCCTTCCTCTTCTACGTAATGACGGAGTATGACTGCAAAGGTTTCCACATCGTGGGCTACTTCTCCAAG ccagcatagcatagctcctgctcctcaacaaaacattctccccaccctagAGCTACTCCCTAAACTTGTGTCTTCTG------TGTTTCCTGGAGCACAGGTCCCTGTACTATGACACTGACCCCTCTCTCTTTTATGTCATGACGGAATATGAATGCAAAGGCTTCCACATTGTAGGGTACCTCTCAAAGgtactggatcatgtagagagttgcaattacccaccaacctgtattttgct Alignment from Spaln_nt2Genome AGTTACTCACAAAACCTGTGTCTTCTGGCCAAGTGTTTCCTGGACCACAAAACACTGTACTATGACACTGACCCCTTCCTCTTCTACGTAATGACGGAGTATGACTGCAAAGGTTTCCACATCGTGGGCTACTTCTCCAAG ccagcatagcatagctcctgctcctcaacaaaacattctccccaccctagAGCTACTCCCTAAACTTGTGTCTTCT------GTGTTTCCTGGAGCACAGGTCCCTGTACTATGACACTGACCCCTCTCTCTTTTATGTCATGACGGAATATGAATGCAAAGGCTTCCACATTGTAGGGTACCTCTCAAAGgtactggatcatgtagagagttgcaattacccaccaacctgtattttgct Alignment from Pairagon AGTTACTCACAAAACCTGTGTCTTCTGGCCAAGTGTTTCCTGGACCACAAAACACTGTACTATGACACTGACCCCTTCCTCTTCTACGTAATGACGGAGTATGACTGCAAAGGTTTCCACATCGTGGGCTACTTCTCCAAG ccagcatagcatagctcctgctcctcaacaaaacattctccccaccctagAGCTACTCCCTAAACTTGTGTCTTCT------GTGTTTCCTGGAGCACAGGTCCCTGTACTATGACACTGACCCCTCTCTCTTTTATGTCATGACGGAATATGAATGCAAAGGCTTCCACATTGTAGGGTACCTCTCAAAGgtactggatcatgtagagagttgcaattacccaccaacctgtattttgct Alignment from Exonerate_protein2genome AGTTACTCACAAAACCTGTGTCTTCTGGCCAAGTGTTTCCTGGACCACAAAACACTGTACTATGACACTGACCCCTTCCTCTTCTACGTAATGACGGAGTATGACTGCAAAGGTTTCCACATCGTGGGCTACTTCTCCAAG ccagcatagcatagctcctgctcctcaacaaaacattctccccaccctagAGCTACTCCCTAAACTTGTGTCTTCTG------TGTTTCCTGGAGCACAGGTCCCTGTACTATGACACTGACCCCTCTCTCTTTTATGTCATGACGGAATATGAATGCAAAGGCTTCCACATTGTAGGGTACCTCTCAAAGgtactggatcatgtagagagttgcaattacccaccaacctgtattttgct Alignment from Exonerate_coding2genome AGTTACTCACAAAACCTGTGTCTTCTGGCCAAGTGTTTCCTGGACCACAAAACACTGTACTATGACACTGACCCCTTCCTCTTCTACGTAATGACGGAGTATGACTGCAAAGGTTTCCACATCGTGGGCTACTTCTCCAAG ccagcatagcatagctcctgctcctcaacaaaacattctccccaccctagAGCTACTCCCTAAACTTGTGTCTTCTG------TGTTTCCTGGAGCACAGGTCCCTGTACTATGACACTGACCCCTCTCTCTTTTATGTCATGACGGAATATGAATGCAAAGGCTTCCACATTGTAGGGTACCTCTCAAAGgtactggatcatgtagagagttgcaattacccaccaacctgtattttgct Alignment from GeneWise AGTTACTCACAAAACCTGTGTCTTCTGGCCAAGTGTTTCCTGGACCACAAAACACTGTACTATGACACTGACCCCTTCCTCTTCTACGTAATGACGGAGTATGACTGCAAAGGTTTCCACATCGTGGGCTACTTCTCCAAG ccagcatagcatagctcctgctcctcaacaaaacattctccccaccctagAGCTACTCCCTAAACTTGTGTCTTCTG------TGTTTCCTGGAGCACAGGTCCCTGTACTATGACACTGACCCCTCTCTCTTTTATGTCATGACGGAATATGAATGCAAAGGCTTCCACATTGTAGGGTACCTCTCAAAGgtactggatcatgtagagagttgcaattacccaccaacctgtattttgct #### Kat5_ID1117_5 --> 0 - 0 Original Alignment CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG catggtatccctcacttccacgcctggactgagtcctccctatccctcagCCGGCCTCAGCCCAGGCCAGCGGGAAGACATTGCCAATCCCAGTCCAGATCATCCTCCGCTTCAACTTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCACTCTCCTCTAGCTCCTGCCTACAACCCAATCACCGCTCAACCgtaagttgcagatcgcaaaaacagtcatcttcataccagctcctgtgtct Alignment from CESAR CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG catggtatccctcacttccacgcctggactgagtcctccctatccctcagCCGGCCTCAGCCCAGGCCAGCGGGAAGACATTGCCAATCCCAGTCCAGATCATCCTCCGCTTCAACTTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCACTCTCCTCTAGCTCCTGCCTACAACCCAATCACCGCTCAACCgtaagttgcagatcgcaaaaacagtcatcttcataccagctcctgtgtct Alignment from Spaln_aa2Genome CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG catggtatccctcacttccacgcctggactgagtcctccctatccctcagCCGGCCTCAGCCCAGGCCAGCGGGAAGACATTGCCAATCCCAGTCCAGATCATCCTCCGCTTCAACTTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCACTCTCCTCTAGCTCCTGCCTACAACCCAATCACCGCTCAACCgtaagttgcagatcgcaaaaacagtcatcttcataccagctcctgtgtct Alignment from Spaln_nt2Genome CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG catggtatccctcacttccacgcctggactgagtcctccctatccctcagCCGGCCTCAGCCCAGGCCAGCGGGAAGACATTGCCAATCCCAGTCCAGATCATCCTCCGCTTCAACTTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCACTCTCCTCTAGCTCCTGCCTACAACCCAATCACCGCTCAACCgtaagttgcagatcgcaaaaacagtcatcttcataccagctcctgtgtct Alignment from Pairagon CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG catggtatccctcacttccacgcctggactgagtcctccctatccctcagCCGGCCTCAGCCCAGGCCAGCGGGAAGACATTGCCAATCCCAGTCCAGATCATCCTCCGCTTCAACTTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCACTCTCCTCTAGCTCCTGCCTACAACCCAATCACCGCTCAACCgtaagttgcagatcgcaaaaacagtcatcttcataccagctcctgtgtct Alignment from Exonerate_protein2genome CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG catggtatccctcacttccacgcctggactgagtcctccctatccctcagCCGGCCTCAGCCCAGGCCAGCGGGAAGACATTGCCAATCCCAGTCCAGATCATCCTCCGCTTCAACTTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCACTCTCCTCTAGCTCCTGCCTACAACCCAATCACCGCTCAACCgtaagttgcagatcgcaaaaacagtcatcttcataccagctcctgtgtct Alignment from Exonerate_coding2genome catggtatccctcacttccacgcctggactgagtcctccctatccctcagccggcctcagcccaggccagcgggaagacattgccaatcccagtccagatcatcctccgcttcaacttgcccaaggagcgggaggccatcccaggtgatgagcctgaccagccactctcctctagctcctgcctacaacccaatcaccgctcaaccgtaagttgcagatcgcaaaaacagtcatcttcataccagctcctgtgtct Alignment from GeneWise CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG catggtatccctcacttccacgcctggactgagtcctccctatccctcagCCGGCCTCAGCCCAGGCCAGCGGGAAGACATTGCCAATCCCAGTCCAGATCATCCTCCGCTTCAACTTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCACTCTCCTCTAGCTCCTGCCTACAACCCAATCACCGCTCAACCgtaagttgcagatcgcaaaaacagtcatcttcataccagctcctgtgtct #### Kazald1_ID9301_3 --> 0 - 1 Original Alignment TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAg acggggttattgcccacaaggttatgggttcttacttgctactcatacagTTCAGAGGTGGACCACAAGAATTTAAGGTGACTAGTTCACTACAGATTCAGGCATTGCACCATAGTGATGAAGGCACATACCGCTGTCTCACCCGAAATGTTCTCAGCCAAGCTGAAGCCTCAGCAACTCTGATAGTGCTTACACCAggcaaacattaattgtgggtagtagcatgtggcaggcgtcatattttaaga Alignment from CESAR TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAg acggggttattgcccacaaggttatgggttcttacttgctactcatacagTTCAGAGGTGGACCACAAGAATTTAAGGTGACTAGTTCACTACAGATTCAGGCATTGCACCATAGTGATGAAGGCACATACCGCTGTCTCACCCGAAATGTTCTCAGCCAAGCTGAAGCCTCAGCAACTCTGATAGTGCTTACACCAggcaaacattaattgtgggtagtagcatgtggcaggcgtcatattttaaga Alignment from Spaln_aa2Genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG acggggttattgcccacaaggttatgggttcttacttgctactcatacagTTCAGAGGTGGACCACAAGAATTTAAGGTGACTAGTTCACTACAGATTCAGGCATTGCACCATAGTGATGAAGGCACATACCGCTGTCTCACCCGAAATGTTCTCAGCCAAGCTGAAGCCTCAGCAACTCTGATAGTGCTTACACCAGgcaaacattaattgtgggtagtagcatgtggcaggcgtcatattttaaga Alignment from Spaln_nt2Genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG acggggttattgcccacaaggttatgggttcttacttgctactcatacagTTCAGAGGTGGACCACAAGAATTTAAGGTGACTAGTTCACTACAGATTCAGGCATTGCACCATAGTGATGAAGGCACATACCGCTGTCTCACCCGAAATGTTCTCAGCCAAGCTGAAGCCTCAGCAACTCTGATAGTGCTTACACCAGgcaaacattaattgtgggtagtagcatgtggcaggcgtcatattttaaga Alignment from Pairagon TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG acggggttattgcccacaaggttatgggttcttacttgctactcatacagTTCAGAGGTGGACCACAAGAATTTAAGGTGACTAGTTCACTACAGATTCAGGCATTGCACCATAGTGATGAAGGCACATACCGCTGTCTCACCCGAAATGTTCTCAGCCAAGCTGAAGCCTCAGCAACTCTGATAGTGCTTACACCAGgcaaacattaattgtgggtagtagcatgtggcaggcgtcatattttaaga Alignment from Exonerate_protein2genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG acggggttattgcccacaaggttatgggttcttacttgctactcatacagTTCAGAGGTGGACCACAAGAATTTAAGGTGACTAGTTCACTACAGATTCAGGCATTGCACCATAGTGATGAAGGCACATACCGCTGTCTCACCCGAAATGTTCTCAGCCAAGCTGAAGCCTCAGCAACTCTGATAGTGCTTACACCAGgcaaacattaattgtgggtagtagcatgtggcaggcgtcatattttaaga Alignment from Exonerate_coding2genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG acggggttattgcccacaaggttatgggttcttacttgctactcatacagTTCAGAGGTGGACCACAAGAATTTAAGGTGACTAGTTCACTACAGATTCAGGCATTGCACCATAGTGATGAAGGCACATACCGCTGTCTCACCCGAAATGTTCTCAGCCAAGCTGAAGCCTCAGCAACTCTGATAGTGCTTACACCAGgcaaacattaattgtgggtagtagcatgtggcaggcgtcatattttaaga Alignment from GeneWise --------------------------------------------GTGCAGTTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACA ACGGGGTTATTGCCCACAAGGTTATGGGTTCTTACTTGCTACTCATACAGTTCAGAGGTGGACCACAAGAATTTAAGGTGACTAGTTCACTACAGATTCAGGCATTGCACCATAGTGATGAAGGCACATACCGCTGTCTCACCCGAAATGTTCTCAGCCAAGCTGAAGCCTCAGCAACTCTGATAgtgcttacaccaggcaaacattaattgtgggtagtagcatgtggcaggcgtcatattttaaga #### Kcnip2_ID9603_9 --> 0 - 0 Original Alignment AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG gtttctctcaacttgccttgaaactgagttactgccctcttttctcctagAAGATGGATAGAATCAAGGATGGTGTGGTGACCATTGAGGAATTCATTGCGTCTTGTCAACAGgttggtaaatgcaagaagggttggggtttgaaaaggggttctaggttcaa Alignment from CESAR AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG gtttctctcaacttgccttgaaactgagttactgccctcttttctcctagAAGATGGATAGAATCAAGGATGGTGTGGTGACCATTGAGGAATTCATTGCGTCTTGTCAACAGgttggtaaatgcaagaagggttggggtttgaaaaggggttctaggttcaa Alignment from Spaln_aa2Genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG gtttctctcaacttgccttgaaactgagttactgccctcttttctcctagAAGATGGATAGAATCAAGGATGGTGTGGTGACCATTGAGGAATTCATTGCGTCTTGTCAACAGgttggtaaatgcaagaagggttggggtttgaaaaggggttctaggttcaa Alignment from Spaln_nt2Genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG gtttctctcaacttgccttgaaactgagttactgccctcttttctcctagAAGATGGATAGAATCAAGGATGGTGTGGTGACCATTGAGGAATTCATTGCGTCTTGTCAACAGgttggtaaatgcaagaagggttggggtttgaaaaggggttctaggttcaa Alignment from Pairagon AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG gtttctctcaacttgccttgaaactgagttactgccctcttttctcctagAAGATGGATAGAATCAAGGATGGTGTGGTGACCATTGAGGAATTCATTGCGTCTTGTCAACAGgttggtaaatgcaagaagggttggggtttgaaaaggggttctaggttcaa Alignment from Exonerate_protein2genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG gtttctctcaacttgccttgaaactgagttactgccctcttttctcctagAAGATGGATAGAATCAAGGATGGTGTGGTGACCATTGAGGAATTCATTGCGTCTTGTCAACAGgttggtaaatgcaagaagggttggggtttgaaaaggggttctaggttcaa Alignment from Exonerate_coding2genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG gtttctctcaacttgccttgaaactgagttactgccctcttttctcctagAAGATGGATAGAATCAAGGATGGTGTGGTGACCATTGAGGAATTCATTGCGTCTTGTCAACAGgttggtaaatgcaagaagggttggggtttgaaaaggggttctaggttcaa Alignment from GeneWise AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG gtttctctcaacttgccttgaaactgagttactgccctcttttctcctagAAGATGGATAGAATCAAGGATGGTGTGGTGACCATTGAGGAATTCATTGCGTCTTGTCAACAGgttggtaaatgcaagaagggttggggtttgaaaaggggttctaggttcaa #### Kcnip2_ID9605_7 --> 0 - 0 Original Alignment GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attgattattattcagtgtcttaagtgcatcttttctctctgtcccacagGACTTTGTGGCAGGTTTGTCAGTGATCCTTCGAGCAACTATAGATGACAGA---TATTGGGCTTTCAATTTATATGACCTCAATAAGGATGGCTGTATCACAAGGGAGgtaagttccatgtaacagactatgctgtgtgagtgcttggttggaattct Alignment from CESAR GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attgattattattcagtgtcttaagtgcatcttttctctctgtcccacagGACTTTGTGGCAGGTTTGTCAGTGATCCTTCGAGCAACTATAGATGACAGA---TATTGGGCTTTCAATTTATATGACCTCAATAAGGATGGCTGTATCACAAGGGAGgtaagttccatgtaacagactatgctgtgtgagtgcttggttggaattct Alignment from Spaln_aa2Genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attgattattattcagtgtcttaagtgcatcttttctctctgtcccacagGACTTTGTGGCAGGTTTGTCAGTGATCCTTCGAGCAACTATAGATGACAGA---TATTGGGCTTTCAATTTATATGACCTCAATAAGGATGGCTGTATCACAAGGGAGgtaagttccatgtaacagactatgctgtgtgagtgcttggttggaattct Alignment from Spaln_nt2Genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attgattattattcagtgtcttaagtgcatcttttctctctgtcccacagGACTTTGTGGCAGGTTTGTCAGTGATCCTTCGAGCAACTATAGATGACAGA---TATTGGGCTTTCAATTTATATGACCTCAATAAGGATGGCTGTATCACAAGGGAGgtaagttccatgtaacagactatgctgtgtgagtgcttggttggaattct Alignment from Pairagon GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attgattattattcagtgtcttaagtgcatcttttctctctgtcccacagGACTTTGTGGCAGGTTTGTCAGTGATCCTTCGAGCAACTATAGATGACAGAT---ATTGGGCTTTCAATTTATATGACCTCAATAAGGATGGCTGTATCACAAGGGAGgtaagttccatgtaacagactatgctgtgtgagtgcttggttggaattct Alignment from Exonerate_protein2genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attgattattattcagtgtcttaagtgcatcttttctctctgtcccacagGACTTTGTGGCAGGTTTGTCAGTGATCCTTCGAGCAACTATAGATGACAGATAT---TGGGCTTTCAATTTATATGACCTCAATAAGGATGGCTGTATCACAAGGGAGgtaagttccatgtaacagactatgctgtgtgagtgcttggttggaattct Alignment from Exonerate_coding2genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attgattattattcagtgtcttaagtgcatcttttctctctgtcccacagGACTTTGTGGCAGGTTTGTCAGTGATCCTTCGAGCAACTATAGATGACAGATAT---TGGGCTTTCAATTTATATGACCTCAATAAGGATGGCTGTATCACAAGGGAGgtaagttccatgtaacagactatgctgtgtgagtgcttggttggaattct Alignment from GeneWise GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG attgattattattcagtgtcttaagtgcatcttttctctctgtcccacagGACTTTGTGGCAGGTTTGTCAGTGATCCTTCGAGCAACTATAGATGACAGATAT---TGGGCTTTCAATTTATATGACCTCAATAAGGATGGCTGTATCACAAGGGAGgtaagttccatgtaacagactatgctgtgtgagtgcttggttggaattct #### Kcnip2_ID9608_4 --> 2 - 0 Original Alignment acAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAG---TTGCAGGTCCTGTACAGAGGCTTCAAGAAC tgaagggctagtgccagtcatgaagtattttctctctctccaatatttagatAGTGTTGAGGATGAGTTTGAACTGTCAATGATTTGTCACCGGCCAGAAAGTTTGGAACAGCTACAGAAACACGCCAAGTTTGCACATAGAGAGTTGCTGCAAGTCTTGTATAGAGGATTCAAAAATgtgaggggggaatgaaaccacctgcggtagaccctccaaacttctaagct Alignment from CESAR acAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAGTTG---CAGGTCCTGTACAGAGGCTTCAAGAAC tgaagggctagtgccagtcatgaagtattttctctctctccaatatttagatAGTGTTGAGGATGAGTTTGAACTGTCAATGATTTGTCACCGGCCAGAAAGTTTGGAACAGCTACAGAAACACGCCAAGTTTGCACATAGAGAGTTGCTGCAAGTCTTGTATAGAGGATTCAAAAATgtgaggggggaatgaaaccacctgcggtagaccctccaaacttctaagct Alignment from Spaln_aa2Genome ACAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAG---TTGCAGGTCCTGTACAGAGGCTTCAAGAAC tgaagggctagtgccagtcatgaagtattttctctctctccaatatttagATAGTGTTGAGGATGAGTTTGAACTGTCAATGATTTGTCACCGGCCAGAAAGTTTGGAACAGCTACAGAAACACGCCAAGTTTGCACATAGAGAGTTGCTGCAAGTCTTGTATAGAGGATTCAAAAATgtgaggggggaatgaaaccacctgcggtagaccctccaaacttctaagct Alignment from Spaln_nt2Genome ACAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAGTTGCAG---GTCCTGTACAGAGGCTTCAAGAAC tgaagggctagtgccagtcatgaagtattttctctctctccaatatttagATAGTGTTGAGGATGAGTTTGAACTGTCAATGATTTGTCACCGGCCAGAAAGTTTGGAACAGCTACAGAAACACGCCAAGTTTGCACATAGAGAGTTGCTGCAAGTCTTGTATAGAGGATTCAAAAATgtgaggggggaatgaaaccacctgcggtagaccctccaaacttctaagct Alignment from Pairagon ACAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAGT---TGCAGGTCCTGTACAGAGGCTTCAAGAAC tgaagggctagtgccagtcatgaagtattttctctctctccaatatttagATAGTGTTGAGGATGAGTTTGAACTGTCAATGATTTGTCACCGGCCAGAAAGTTTGGAACAGCTACAGAAACACGCCAAGTTTGCACATAGAGAGTTGCTGCAAGTCTTGTATAGAGGATTCAAAAATgtgaggggggaatgaaaccacctgcggtagaccctccaaacttctaagct Alignment from Exonerate_protein2genome ACAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAG---TTGCAGGTCCTGTACAGAGGCTTCAAGAAC tgaagggctagtgccagtcatgaagtattttctctctctccaatatttagATAGTGTTGAGGATGAGTTTGAACTGTCAATGATTTGTCACCGGCCAGAAAGTTTGGAACAGCTACAGAAACACGCCAAGTTTGCACATAGAGAGTTGCTGCAAGTCTTGTATAGAGGATTCAAAAATgtgaggggggaatgaaaccacctgcggtagaccctccaaacttctaagct Alignment from Exonerate_coding2genome ACAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAG---TTGCAGGTCCTGTACAGAGGCTTCAAGAAC tgaagggctagtgccagtcatgaagtattttctctctctccaatatttagATAGTGTTGAGGATGAGTTTGAACTGTCAATGATTTGTCACCGGCCAGAAAGTTTGGAACAGCTACAGAAACACGCCAAGTTTGCACATAGAGAGTTGCTGCAAGTCTTGTATAGAGGATTCAAAAATgtgaggggggaatgaaaccacctgcggtagaccctccaaacttctaagct Alignment from GeneWise ACAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAGTTCACACGCAGAGAGTTG---CAGGTCCTGTACAGAGGCTTCAAGAAC tgaagggctagtgccagtcatgaagtattttctctctctccaatatttagATAGTGTTGAGGATGAGTTTGAACTGTCAATGATTTGTCACCGGCCAGAAAGTTTGGAACAGCTACAGAAACACGCCAAGTTTGCACATAGAGAGTTGCTGCAAGTCTTGTATAGAGGATTCAAAAATgtgaggggggaatgaaaccacctgcggtagaccctccaaacttctaagct #### Kcnip2_ID9609_3 --> 2 - 1 Original Alignment caTTAGCTGCCCCAGCCTCCCTCCGCCCCCACAGACCCCGCCCGCTGGACCCAg gtcggggtttcaggttgcttgcccaatttatgagcaatttctaattctagcaTTAGCTGCCCCAGCCTCCCTTCGCCCCCATAGACCCCGACCACTGGACCCAggtaggctagacccttggctgttactggttgatatcaaatttaggacccag Alignment from CESAR caTTAGCTGCCCCAGCCTCCCTCCGCCCCCACAGACCCCGCCCGCTGGACCCAg gtcggggtttcaggttgcttgcccaatttatgagcaatttctaattctagcaTTAGCTGCCCCAGCCTCCCTTCGCCCCCATAGACCCCGACCACTGGACCCAggtaggctagacccttggctgttactggttgatatcaaatttaggacccag Alignment from Spaln_aa2Genome CATTAGCTGCCCCAGCCTCCCTCCGCCCCCACAGACCCCGCCCGCTGGACCCAG gtcggggtttcaggttgcttgcccaatttatgagcaatttctaattctagCATTAGCTGCCCCAGCCTCCCTTCGCCCCCATAGACCCCGACCACTGGACCCAGgtaggctagacccttggctgttactggttgatatcaaatttaggacccag Alignment from Spaln_nt2Genome CATTAGCTGCCCCAGCCTCCCTCCGCCCCCACAGACCCCGCCCGCTGGACCCAG gtcggggtttcaggttgcttgcccaatttatgagcaatttctaattctagCATTAGCTGCCCCAGCCTCCCTTCGCCCCCATAGACCCCGACCACTGGACCCAGgtaggctagacccttggctgttactggttgatatcaaatttaggacccag Alignment from Pairagon CATTAGCTGCCCCAGCCTCCCTCCGCCCCCACAGACCCCGCCCGCTGGACCCAG gtcggggtttcaggttgcttgcccaatttatgagcaatttctaattctagCATTAGCTGCCCCAGCCTCCCTTCGCCCCCATAGACCCCGACCACTGGACCCAGgtaggctagacccttggctgttactggttgatatcaaatttaggacccag Alignment from Exonerate_protein2genome CATTAGCTGCCCCAGCCTCCCTCCGCCCCCACAGACCCCGCCCGCTGGACCCAG gtcggggtttcaggttgcttgcccaatttatgagcaatttctaattctagCATTAGCTGCCCCAGCCTCCCTTCGCCCCCATAGACCCCGACCACTGGACCCAGgtaggctagacccttggctgttactggttgatatcaaatttaggacccag Alignment from Exonerate_coding2genome CATTAGCTGCCCCAGCCTCCCTCCGCCCCCACAGACCCCGCCCGCTGGACCCAG gtcggggtttcaggttgcttgcccaatttatgagcaatttctaattctagCATTAGCTGCCCCAGCCTCCCTTCGCCCCCATAGACCCCGACCACTGGACCCAGgtaggctagacccttggctgttactggttgatatcaaatttaggacccag Alignment from GeneWise CATTAGCTGCCCCAGCCTCCCTCCGCCCCCACAGACCCCGCCCGCTGGACCCAG gtcggggtttcaggttgcttgcccaatttatgagcaatttctaattctagCATTAGCTGCCCCAGCCTCCCTTCGCCCCCATAGACCCCGACCACTGGACCCAGgtaggctagacccttggctgttactggttgatatcaaatttaggacccag #### Kdm2a_ID503_17 --> 1 - 1 Original Alignment ATAAAtg gTGCTGTGATAAACGACTTTGGACAAAAATTGACTTGAGTAGGTGTAAGGCCATCGTACCACAAGCTCTCAGTGGTATCATCAAGCGGCAGCCAGTAAGCCTCGACCTCAGCTGGACTAACATCTCCAAAAAGCAGCTGACATGGCTGGTCAATAGGCTGCCAg ATAAAtggtaacagctaacacaaaggactatttttctatattttctctaggTGCTGTGACAAAAGACTTTGGATGAAAGTTGATTTAAGCCGATGTAAGGCCATAACACCACATGCACTCACTGGTATCATTAAACACCAGCCAGTAAGTCTTGATATAAGTTGGACTAACATCTTAAAGAAGCAGCTTACCTGGCTGATAAACAGATTGCCAggtaaagacgcatatcagtttgtgcctgatcccgcccatgctttatcaagt Alignment from CESAR ATAAAtg gTGCTGTGATAAACGACTTTGGACAAAAATTGACTTGAGTAGGTGTAAGGCCATCGTACCACAAGCTCTCAGTGGTATCATCAAGCGGCAGCCAGTAAGCCTCGACCTCAGCTGGACTAACATCTCCAAAAAGCAGCTGACATGGCTGGTCAATAGGCTGCCAg ATAAAtggtaagtgctaacacaaaggactatttttctatattttctctaggTGCTGTGACAAAAGACTTTGGATGAAAGTTGATTTAAGCCGATGTAAGGCCATAACACCACATGCACTCACTGGTATCATTAAACACCAGCCAGTAAGTCTTGATATAAGTTGGACTAACATCTTAAAGAAGCAGCTTACCTGGCTGATAAACAGATTGCCAggtaaagacgcatatcagtttgtgcctgatcccgcccatgctttatcaagt Alignment from Spaln_aa2Genome ATAAATG GTGCTGTGATAAACGACTTTGGACAAAAATTGACTTGAGTAGGTGTAAGGCCATCGTACCACAAGCTCTCAGTGGTATCATCAAGCGGCAGCCAGTAAGCCTCGACCTCAGCTGGACTAACATCTCCAAAAAGCAGCTGACATGGCTGGTCAATAGGCTGCCAG ATAAATGgtaacagctaacacaaaggactatttttctatattttctctagGTGCTGTGACAAAAGACTTTGGATGAAAGTTGATTTAAGCCGATGTAAGGCCATAACACCACATGCACTCACTGGTATCATTAAACACCAGCCAGTAAGTCTTGATATAAGTTGGACTAACATCTTAAAGAAGCAGCTTACCTGGCTGATAAACAGATTGCCAGgtaaagacgcatatcagtttgtgcctgatcccgcccatgctttatcaagt Alignment from Spaln_nt2Genome ATAAATG GTGCTGTGATAAACGACTTTGGACAAAAATTGACTTGAGTAGGTGTAAGGCCATCGTACCACAAGCTCTCAGTGGTATCATCAAGCGGCAGCCAGTAAGCCTCGACCTCAGCTGGACTAACATCTCCAAAAAGCAGCTGACATGGCTGGTCAATAGGCTGCCAG ATAAATGgtaacagctaacacaaaggactatttttctatattttctctagGTGCTGTGACAAAAGACTTTGGATGAAAGTTGATTTAAGCCGATGTAAGGCCATAACACCACATGCACTCACTGGTATCATTAAACACCAGCCAGTAAGTCTTGATATAAGTTGGACTAACATCTTAAAGAAGCAGCTTACCTGGCTGATAAACAGATTGCCAGgtaaagacgcatatcagtttgtgcctgatcccgcccatgctttatcaagt Alignment from Pairagon ATAAATG GTGCTGTGATAAACGACTTTGGACAAAAATTGACTTGAGTAGGTGTAAGGCCATCGTACCACAAGCTCTCAGTGGTATCATCAAGCGGCAGCCAGTAAGCCTCGACCTCAGCTGGACTAACATCTCCAAAAAGCAGCTGACATGGCTGGTCAATAGGCTGCCAG ATAAATGgtaacagctaacacaaaggactatttttctatattttctctagGTGCTGTGACAAAAGACTTTGGATGAAAGTTGATTTAAGCCGATGTAAGGCCATAACACCACATGCACTCACTGGTATCATTAAACACCAGCCAGTAAGTCTTGATATAAGTTGGACTAACATCTTAAAGAAGCAGCTTACCTGGCTGATAAACAGATTGCCAGgtaaagacgcatatcagtttgtgcctgatcccgcccatgctttatcaagt Alignment from Exonerate_protein2genome ATAAATG GTGCTGTGATAAACGACTTTGGACAAAAATTGACTTGAGTAGGTGTAAGGCCATCGTACCACAAGCTCTCAGTGGTATCATCAAGCGGCAGCCAGTAAGCCTCGACCTCAGCTGGACTAACATCTCCAAAAAGCAGCTGACATGGCTGGTCAATAGGCTGCCAG ATAAATGgtaacagctaacacaaaggactatttttctatattttctctagGTGCTGTGACAAAAGACTTTGGATGAAAGTTGATTTAAGCCGATGTAAGGCCATAACACCACATGCACTCACTGGTATCATTAAACACCAGCCAGTAAGTCTTGATATAAGTTGGACTAACATCTTAAAGAAGCAGCTTACCTGGCTGATAAACAGATTGCCAGgtaaagacgcatatcagtttgtgcctgatcccgcccatgctttatcaagt Alignment from Exonerate_coding2genome ATAAATG GTGCTGTGATAAACGACTTTGGACAAAAATTGACTTGAGTAGGTGTAAGGCCATCGTACCACAAGCTCTCAGTGGTATCATCAAGCGGCAGCCAGTAAGCCTCGACCTCAGCTGGACTAACATCTCCAAAAAGCAGCTGACATGGCTGGTCAATAGGCTGCCAG ATAAATGgtaacagctaacacaaaggactatttttctatattttctctagGTGCTGTGACAAAAGACTTTGGATGAAAGTTGATTTAAGCCGATGTAAGGCCATAACACCACATGCACTCACTGGTATCATTAAACACCAGCCAGTAAGTCTTGATATAAGTTGGACTAACATCTTAAAGAAGCAGCTTACCTGGCTGATAAACAGATTGCCAGgtaaagacgcatatcagtttgtgcctgatcccgcccatgctttatcaagt Alignment from GeneWise ATAAATG GTGCTGTGATAAACGACTTTGGACAAAAATTGACTTGAGTAGGTGTAAGGCCATCGTACCACAAGCTCTCAGTGGTATCATCAAGCGGCAGCCAGTAAGCCTCGACCTCAGCTGGACTAACATCTCCAAAAAGCAGCTGACATGGCTGGTCAATAGGCTGCCAG ATAAATGgtaacagctaacacaaaggactatttttctatattttctctagGTGCTGTGACAAAAGACTTTGGATGAAAGTTGATTTAAGCCGATGTAAGGCCATAACACCACATGCACTCACTGGTATCATTAAACACCAGCCAGTAAGTCTTGATATAAGTTGGACTAACATCTTAAAGAAGCAGCTTACCTGGCTGATAAACAGATTGCCAGgtaaagacgcatatcagtttgtgcctgatcccgcccatgctttatcaagt #### Kdm2a_ID507_13 --> 0 - 0 Original Alignment CTTAAATTCCCTACCAGGCCAAAGGTGAGGGTTCCTACAATTCCCATCACAAAGCCTCACACCATGAAGCCAGCTCCACGCTTAACACCTGTAAGGCCTGCTGCAGCCTCCCCCATTGTGTCAGGAGCCAGGCGGAGAAGAGTGCGGTGCAGGAAATGCAAAGCTTGTGTGCAAGGAGAATGTGGAGTCTGCCACTACTGCAGGGACATGAAGAAATTTGGTGGACCTGGACGCATGAAGCAATCCTGTGTCCTCCGACAGTGCTTAGCA aaatggagccagtgccatttagctacagatattgcaaacgtgtcttccagCTTAAATTTCCTACCAGGCCAAAGGTGAGGGTTCCTACAATTCCCATCACAAAGCCTCACACCATGAAACCAGCTCCACGCTTAACACCTGTCAAGCCTGCTGCAGCCTCCCCCATTGTATCAGGGGCTAGACGGAGAAGAGTACGGTGCAGGAAGTGCAAAGCTTGTGTGCAAGGAGAATGCGGAGTCTGCCACTACTGTGGGGACATGAAGAAATTTGGTGGACCTGGCCGCATGAAGCAATCCTGTGTCCTTCGACAGTGCTTAGCAgtgctgcatttggtcgaatgacacttatagaggagagcatgttgcacaca Alignment from CESAR CTTAAATTCCCTACCAGGCCAAAGGTGAGGGTTCCTACAATTCCCATCACAAAGCCTCACACCATGAAGCCAGCTCCACGCTTAACACCTGTAAGGCCTGCTGCAGCCTCCCCCATTGTGTCAGGAGCCAGGCGGAGAAGAGTGCGGTGCAGGAAATGCAAAGCTTGTGTGCAAGGAGAATGTGGAGTCTGCCACTACTGCAGGGACATGAAGAAATTTGGTGGACCTGGACGCATGAAGCAATCCTGTGTCCTCCGACAGTGCTTAGCA aaatggagccagtgccatttagctacagatattgcaaacgtgtcttccagCTTAAATTTCCTACCAGGCCAAAGGTGAGGGTTCCTACAATTCCCATCACAAAGCCTCACACCATGAAACCAGCTCCACGCTTAACACCTGTCAAGCCTGCTGCAGCCTCCCCCATTGTATCAGGGGCTAGACGGAGAAGAGTACGGTGCAGGAAGTGCAAAGCTTGTGTGCAAGGAGAATGCGGAGTCTGCCACTACTGTGGGGACATGAAGAAATTTGGTGGACCTGGCCGCATGAAGCAATCCTGTGTCCTTCGACAGTGCTTAGCAgtgctgcatttggtcgaatgacacttatagaggagagcatgttgcacaca Alignment from Spaln_aa2Genome CTTAAATTCCCTACCAGGCCAAAGGTGAGGGTTCCTACAATTCCCATCACAAAGCCTCACACCATGAAGCCAGCTCCACGCTTAACACCTGTAAGGCCTGCTGCAGCCTCCCCCATTGTGTCAGGAGCCAGGCGGAGAAGAGTGCGGTGCAGGAAATGCAAAGCTTGTGTGCAAGGAGAATGTGGAGTCTGCCACTACTGCAGGGACATGAAGAAATTTGGTGGACCTGGACGCATGAAGCAATCCTGTGTCCTCCGACAGTGCTTAGCA aaatggagccagtgccatttagctacagatattgcaaacgtgtcttccagCTTAAATTTCCTACCAGGCCAAAGGTGAGGGTTCCTACAATTCCCATCACAAAGCCTCACACCATGAAACCAGCTCCACGCTTAACACCTGTCAAGCCTGCTGCAGCCTCCCCCATTGTATCAGGGGCTAGACGGAGAAGAGTACGGTGCAGGAAGTGCAAAGCTTGTGTGCAAGGAGAATGCGGAGTCTGCCACTACTGTGGGGACATGAAGAAATTTGGTGGACCTGGCCGCATGAAGCAATCCTGTGTCCTTCGACAGTGCTTAGCAgtgctgcatttggtcgaatgacacttatagaggagagcatgttgcacaca Alignment from Spaln_nt2Genome CTTAAATTCCCTACCAGGCCAAAGGTGAGGGTTCCTACAATTCCCATCACAAAGCCTCACACCATGAAGCCAGCTCCACGCTTAACACCTGTAAGGCCTGCTGCAGCCTCCCCCATTGTGTCAGGAGCCAGGCGGAGAAGAGTGCGGTGCAGGAAATGCAAAGCTTGTGTGCAAGGAGAATGTGGAGTCTGCCACTACTGCAGGGACATGAAGAAATTTGGTGGACCTGGACGCATGAAGCAATCCTGTGTCCTCCGACAGTGCTTAGCA aaatggagccagtgccatttagctacagatattgcaaacgtgtcttccagCTTAAATTTCCTACCAGGCCAAAGGTGAGGGTTCCTACAATTCCCATCACAAAGCCTCACACCATGAAACCAGCTCCACGCTTAACACCTGTCAAGCCTGCTGCAGCCTCCCCCATTGTATCAGGGGCTAGACGGAGAAGAGTACGGTGCAGGAAGTGCAAAGCTTGTGTGCAAGGAGAATGCGGAGTCTGCCACTACTGTGGGGACATGAAGAAATTTGGTGGACCTGGCCGCATGAAGCAATCCTGTGTCCTTCGACAGTGCTTAGCAgtgctgcatttggtcgaatgacacttatagaggagagcatgttgcacaca Alignment from Pairagon CTTAAATTCCCTACCAGGCCAAAGGTGAGGGTTCCTACAATTCCCATCACAAAGCCTCACACCATGAAGCCAGCTCCACGCTTAACACCTGTAAGGCCTGCTGCAGCCTCCCCCATTGTGTCAGGAGCCAGGCGGAGAAGAGTGCGGTGCAGGAAATGCAAAGCTTGTGTGCAAGGAGAATGTGGAGTCTGCCACTACTGCAGGGACATGAAGAAATTTGGTGGACCTGGACGCATGAAGCAATCCTGTGTCCTCCGACAGTGCTTAGCA aaatggagccagtgccatttagctacagatattgcaaacgtgtcttccagCTTAAATTTCCTACCAGGCCAAAGGTGAGGGTTCCTACAATTCCCATCACAAAGCCTCACACCATGAAACCAGCTCCACGCTTAACACCTGTCAAGCCTGCTGCAGCCTCCCCCATTGTATCAGGGGCTAGACGGAGAAGAGTACGGTGCAGGAAGTGCAAAGCTTGTGTGCAAGGAGAATGCGGAGTCTGCCACTACTGTGGGGACATGAAGAAATTTGGTGGACCTGGCCGCATGAAGCAATCCTGTGTCCTTCGACAGTGCTTAGCAgtgctgcatttggtcgaatgacacttatagaggagagcatgttgcacaca Alignment from Exonerate_protein2genome CTTAAATTCCCTACCAGGCCAAAGGTGAGGGTTCCTACAATTCCCATCACAAAGCCTCACACCATGAAGCCAGCTCCACGCTTAACACCTGTAAGGCCTGCTGCAGCCTCCCCCATTGTGTCAGGAGCCAGGCGGAGAAGAGTGCGGTGCAGGAAATGCAAAGCTTGTGTGCAAGGAGAATGTGGAGTCTGCCACTACTGCAGGGACATGAAGAAATTTGGTGGACCTGGACGCATGAAGCAATCCTGTGTCCTCCGACAGTGCTTAGCA aaatggagccagtgccatttagctacagatattgcaaacgtgtcttccagCTTAAATTTCCTACCAGGCCAAAGGTGAGGGTTCCTACAATTCCCATCACAAAGCCTCACACCATGAAACCAGCTCCACGCTTAACACCTGTCAAGCCTGCTGCAGCCTCCCCCATTGTATCAGGGGCTAGACGGAGAAGAGTACGGTGCAGGAAGTGCAAAGCTTGTGTGCAAGGAGAATGCGGAGTCTGCCACTACTGTGGGGACATGAAGAAATTTGGTGGACCTGGCCGCATGAAGCAATCCTGTGTCCTTCGACAGTGCTTAGCAgtgctgcatttggtcgaatgacacttatagaggagagcatgttgcacaca Alignment from Exonerate_coding2genome CTTAAATTCCCTACCAGGCCAAAGGTGAGGGTTCCTACAATTCCCATCACAAAGCCTCACACCATGAAGCCAGCTCCACGCTTAACACCTGTAAGGCCTGCTGCAGCCTCCCCCATTGTGTCAGGAGCCAGGCGGAGAAGAGTGCGGTGCAGGAAATGCAAAGCTTGTGTGCAAGGAGAATGTGGAGTCTGCCACTACTGCAGGGACATGAAGAAATTTGGTGGACCTGGACGCATGAAGCAATCCTGTGTCCTCCGACAGTGCTTAGCA aaatggagccagtgccatttagctacagatattgcaaacgtgtcttccagCTTAAATTTCCTACCAGGCCAAAGGTGAGGGTTCCTACAATTCCCATCACAAAGCCTCACACCATGAAACCAGCTCCACGCTTAACACCTGTCAAGCCTGCTGCAGCCTCCCCCATTGTATCAGGGGCTAGACGGAGAAGAGTACGGTGCAGGAAGTGCAAAGCTTGTGTGCAAGGAGAATGCGGAGTCTGCCACTACTGTGGGGACATGAAGAAATTTGGTGGACCTGGCCGCATGAAGCAATCCTGTGTCCTTCGACAGTGCTTAGCAgtgctgcatttggtcgaatgacacttatagaggagagcatgttgcacaca Alignment from GeneWise CTTAAATTCCCTACCAGGCCAAAGGTGAGGGTTCCTACAATTCCCATCACAAAGCCTCACACCATGAAGCCAGCTCCACGCTTAACACCTGTAAGGCCTGCTGCAGCCTCCCCCATTGTGTCAGGAGCCAGGCGGAGAAGAGTGCGGTGCAGGAAATGCAAAGCTTGTGTGCAAGGAGAATGTGGAGTCTGCCACTACTGCAGGGACATGAAGAAATTTGGTGGACCTGGACGCATGAAGCAATCCTGTGTCCTCCGACAGTGCTTAGCA aaatggagccagtgccatttagctacagatattgcaaacgtgtcttccagCTTAAATTTCCTACCAGGCCAAAGGTGAGGGTTCCTACAATTCCCATCACAAAGCCTCACACCATGAAACCAGCTCCACGCTTAACACCTGTCAAGCCTGCTGCAGCCTCCCCCATTGTATCAGGGGCTAGACGGAGAAGAGTACGGTGCAGGAAGTGCAAAGCTTGTGTGCAAGGAGAATGCGGAGTCTGCCACTACTGTGGGGACATGAAGAAATTTGGTGGACCTGGCCGCATGAAGCAATCCTGTGTCCTTCGACAGTGCTTAGCAgtgctgcatttggtcgaatgacacttatagaggagagcatgttgcacaca #### Kdm2a_ID511_10 --> 0 - 1 Original Alignment GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGg ccttgtgaagtgacttaatagtatcctccttaacctacccctctccccagATTCCCAACAAATTCCATTATCCATTTTATTATGAAATGTGTTGTTATGTGTTGGAACATTACATATACTGCATAACCAATCGGTCACATCTAACAAAAGATTTCCAGAAGGAATCACTGAGCATGggtatgctcaataaataagatgaaagatagtgccccccctgcccccttttt Alignment from CESAR GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGg ccttgtgaagtgacttaatagtatcctccttaacctacccctctccccagATTCCCAACAAATTCCATTATCCATTTTATTATGAAATGTGTTGTTATGTGTTGGAACATTACATATACTGCATAACCAATCGGTCACATCTAACAAAAGATTTCCAGAAGGAATCACTGAGCATGggtatgctcaataaataagatgaaagatagtgccccccctgcccccttttt Alignment from Spaln_aa2Genome GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGG ccttgtgaagtgacttaatagtatcctccttaacctacccctctccccagATTCCCAACAAATTCCATTATCCATTTTATTATGAAATGTGTTGTTATGTGTTGGAACATTACATATACTGCATAACCAATCGGTCACATCTAACAAAAGATTTCCAGAAGGAATCACTGAGCATGGgtatgctcaataaataagatgaaagatagtgccccccctgcccccttttt Alignment from Spaln_nt2Genome GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGG ccttgtgaagtgacttaatagtatcctccttaacctacccctctccccagATTCCCAACAAATTCCATTATCCATTTTATTATGAAATGTGTTGTTATGTGTTGGAACATTACATATACTGCATAACCAATCGGTCACATCTAACAAAAGATTTCCAGAAGGAATCACTGAGCATGGgtatgctcaataaataagatgaaagatagtgccccccctgcccccttttt Alignment from Pairagon GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGG ccttgtgaagtgacttaatagtatcctccttaacctacccctctccccagATTCCCAACAAATTCCATTATCCATTTTATTATGAAATGTGTTGTTATGTGTTGGAACATTACATATACTGCATAACCAATCGGTCACATCTAACAAAAGATTTCCAGAAGGAATCACTGAGCATGGgtatgctcaataaataagatgaaagatagtgccccccctgcccccttttt Alignment from Exonerate_protein2genome GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGG ccttgtgaagtgacttaatagtatcctccttaacctacccctctccccagATTCCCAACAAATTCCATTATCCATTTTATTATGAAATGTGTTGTTATGTGTTGGAACATTACATATACTGCATAACCAATCGGTCACATCTAACAAAAGATTTCCAGAAGGAATCACTGAGCATGGgtatgctcaataaataagatgaaagatagtgccccccctgcccccttttt Alignment from Exonerate_coding2genome GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGG ccttgtgaagtgacttaatagtatcctccttaacctacccctctccccagATTCCCAACAAATTCCATTATCCATTTTATTATGAAATGTGTTGTTATGTGTTGGAACATTACATATACTGCATAACCAATCGGTCACATCTAACAAAAGATTTCCAGAAGGAATCACTGAGCATGGgtatgctcaataaataagatgaaagatagtgccccccctgcccccttttt Alignment from GeneWise GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGG ccttgtgaagtgacttaatagtatcctccttaacctacccctctccccagATTCCCAACAAATTCCATTATCCATTTTATTATGAAATGTGTTGTTATGTGTTGGAACATTACATATACTGCATAACCAATCGGTCACATCTAACAAAAGATTTCCAGAAGGAATCACTGAGCATGGgtatgctcaataaataagatgaaagatagtgccccccctgcccccttttt #### Kdm2a_ID514_7 --> 1 - 0 Original Alignment gTACTGTCTAATGAGTGTTCGAGGCTGCTATACTGACTTCCATGTGGATTTTGGAGGTACTTCTGTTTGGTATCACATCCACCAAGGTGGAAAG ctgggcaagtgctgggctggggaatttgagcatatctctttgtgctacaggTATTGCTTAATGAGTGTTCGTGGCTGTTATAGTGACTTCCATGTAGATTTTGGGGGTACTTCTGTTTGGTACCATAACCATCAAGGTGGAAAGgtaatggtatggttgatctatggcagtggaaacaattcgcatatagtctc Alignment from CESAR gTACTGTCTAATGAGTGTTCGAGGCTGCTATACTGACTTCCATGTGGATTTTGGAGGTACTTCTGTTTGGTATCACATCCACCAAGGTGGAAAG ctgggcaagtgctgggctggggaatttgagcatatctctttgtgctacaggTATTGCTTAATGAGTGTTCGTGGCTGTTATAGTGACTTCCATGTAGATTTTGGGGGTACTTCTGTTTGGTACCATAACCATCAAGGTGGAAAGgtaatggtatggttgatctatggcagtggaaacaattcgcatatagtctc Alignment from Spaln_aa2Genome GTACTGTCTAATGAGTGTTCGAGGCTGCTATACTGACTTCCATGTGGATTTTGGAGGTACTTCTGTTTGGTATCACATCCACCAAGGTGGAAAG ctgggcaagtgctgggctggggaatttgagcatatctctttgtgctacagGTATTGCTTAATGAGTGTTCGTGGCTGTTATAGTGACTTCCATGTAGATTTTGGGGGTACTTCTGTTTGGTACCATAACCATCAAGGTGGAAAGgtaatggtatggttgatctatggcagtggaaacaattcgcatatagtctc Alignment from Spaln_nt2Genome GTACTGTCTAATGAGTGTTCGAGGCTGCTATACTGACTTCCATGTGGATTTTGGAGGTACTTCTGTTTGGTATCACATCCACCAAGGTGGAAAG ctgggcaagtgctgggctggggaatttgagcatatctctttgtgctacagGTATTGCTTAATGAGTGTTCGTGGCTGTTATAGTGACTTCCATGTAGATTTTGGGGGTACTTCTGTTTGGTACCATAACCATCAAGGTGGAAAGgtaatggtatggttgatctatggcagtggaaacaattcgcatatagtctc Alignment from Pairagon GTACTGTCTAATGAGTGTTCGAGGCTGCTATACTGACTTCCATGTGGATTTTGGAGGTACTTCTGTTTGGTATCACATCCACCAAGGTGGAAAG ctgggcaagtgctgggctggggaatttgagcatatctctttgtgctacagGTATTGCTTAATGAGTGTTCGTGGCTGTTATAGTGACTTCCATGTAGATTTTGGGGGTACTTCTGTTTGGTACCATAACCATCAAGGTGGAAAGgtaatggtatggttgatctatggcagtggaaacaattcgcatatagtctc Alignment from Exonerate_protein2genome GTACTGTCTAATGAGTGTTCGAGGCTGCTATACTGACTTCCATGTGGATTTTGGAGGTACTTCTGTTTGGTATCACATCCACCAAGGTGGAAAG ctgggcaagtgctgggctggggaatttgagcatatctctttgtgctacagGTATTGCTTAATGAGTGTTCGTGGCTGTTATAGTGACTTCCATGTAGATTTTGGGGGTACTTCTGTTTGGTACCATAACCATCAAGGTGGAAAGgtaatggtatggttgatctatggcagtggaaacaattcgcatatagtctc Alignment from Exonerate_coding2genome GTACTGTCTAATGAGTGTTCGAGGCTGCTATACTGACTTCCATGTGGATTTTGGAGGTACTTCTGTTTGGTATCACATCCACCAAGGTGGAAAG ctgggcaagtgctgggctggggaatttgagcatatctctttgtgctacagGTATTGCTTAATGAGTGTTCGTGGCTGTTATAGTGACTTCCATGTAGATTTTGGGGGTACTTCTGTTTGGTACCATAACCATCAAGGTGGAAAGgtaatggtatggttgatctatggcagtggaaacaattcgcatatagtctc Alignment from GeneWise GTACTGTCTAATGAGTGTTCGAGGCTGCTATACTGACTTCCATGTGGATTTTGGAGGTACTTCTGTTTGGTATCACATCCACCAAGGTGGAAAG ctgggcaagtgctgggctggggaatttgagcatatctctttgtgctacagGTATTGCTTAATGAGTGTTCGTGGCTGTTATAGTGACTTCCATGTAGATTTTGGGGGTACTTCTGTTTGGTACCATAACCATCAAGGTGGAAAGgtaatggtatggttgatctatggcagtggaaacaattcgcatatagtctc #### Kif11_ID7312_2 --> 1 - 0 Original Alignment aCCATTTAATCTGGCAGAGCGGAAAGCTAATGCCCACTCAGTAGTGGAATGTGACCATGCACGGAAAGAAGTCAGTGTACGGACTGCAGGGTTGACGGACAAGACCTCCAAGAAAACATACACGTTTGATATG gttatgtaacttcatccaagagtttctaaactgttatgtgttatttccagaCCATTTAACCTGGCAGACCGTAAGGCCAATGCTCACTCAGTATTAGATTGTGATCATGCACGGAAAGAAGTCAGTGTACGCAGTGCAGGGTTGACTGACAAGACATCTAAGAAAAGTTATACTGTTGATATGgcaagtattgttttctatacactgaggtgctggtcacataggtcatccaa Alignment from CESAR aCCATTTAATCTGGCAGAGCGGAAAGCTAATGCCCACTCAGTAGTGGAATGTGACCATGCACGGAAAGAAGTCAGTGTACGGACTGCAGGGTTGACGGACAAGACCTCCAAGAAAACATACACGTTTGATATG gttatgtaacttcatccaagagtttctaaactgttatgtgttatttccagaCCATTTAACCTGGCAGACCGTAAGGCCAATGCTCACTCAGTATTAGATTGTGATCATGCACGGAAAGAAGTCAGTGTACGCAGTGCAGGGTTGACTGACAAGACATCTAAGAAAAGTTATACTGTTGATATGgcaagtattgttttctatacactgaggtgctggtcacataggtcatccaa Alignment from Spaln_aa2Genome ACCATTTAATCTGGCAGAGCGGAAAGCTAATGCCCACTCAGTAGTGGAATGTGACCATGCACGGAAAGAAGTCAGTGTACGGACTGCAGGGTTGACGGACAAGACCTCCAAGAAAACATACACGTTTGATATG gttatgtaacttcatccaagagtttctaaactgttatgtgttatttccagACCATTTAACCTGGCAGACCGTAAGGCCAATGCTCACTCAGTATTAGATTGTGATCATGCACGGAAAGAAGTCAGTGTACGCAGTGCAGGGTTGACTGACAAGACATCTAAGAAAAGTTATACTGTTGATATGgcaagtattgttttctatacactgaggtgctggtcacataggtcatccaa Alignment from Spaln_nt2Genome ACCATTTAATCTGGCAGAGCGGAAAGCTAATGCCCACTCAGTAGTGGAATGTGACCATGCACGGAAAGAAGTCAGTGTACGGACTGCAGGGTTGACGGACAAGACCTCCAAGAAAACATACACGTTTGATATG gttatgtaacttcatccaagagtttctaaactgttatgtgttatttccagACCATTTAACCTGGCAGACCGTAAGGCCAATGCTCACTCAGTATTAGATTGTGATCATGCACGGAAAGAAGTCAGTGTACGCAGTGCAGGGTTGACTGACAAGACATCTAAGAAAAGTTATACTGTTGATATGgcaagtattgttttctatacactgaggtgctggtcacataggtcatccaa Alignment from Pairagon ACCATTTAATCTGGCAGAGCGGAAAGCTAATGCCCACTCAGTAGTGGAATGTGACCATGCACGGAAAGAAGTCAGTGTACGGACTGCAGGGTTGACGGACAAGACCTCCAAGAAAACATACACGTTTGATATG gttatgtaacttcatccaagagtttctaaactgttatgtgttatttccagACCATTTAACCTGGCAGACCGTAAGGCCAATGCTCACTCAGTATTAGATTGTGATCATGCACGGAAAGAAGTCAGTGTACGCAGTGCAGGGTTGACTGACAAGACATCTAAGAAAAGTTATACTGTTGATATGgcaagtattgttttctatacactgaggtgctggtcacataggtcatccaa Alignment from Exonerate_protein2genome ACCATTTAATCTGGCAGAGCGGAAAGCTAATGCCCACTCAGTAGTGGAATGTGACCATGCACGGAAAGAAGTCAGTGTACGGACTGCAGGGTTGACGGACAAGACCTCCAAGAAAACATACACGTTTGATATG gttatgtaacttcatccaagagtttctaaactgttatgtgttatttccagACCATTTAACCTGGCAGACCGTAAGGCCAATGCTCACTCAGTATTAGATTGTGATCATGCACGGAAAGAAGTCAGTGTACGCAGTGCAGGGTTGACTGACAAGACATCTAAGAAAAGTTATACTGTTGATATGgcaagtattgttttctatacactgaggtgctggtcacataggtcatccaa Alignment from Exonerate_coding2genome ACCATTTAATCTGGCAGAGCGGAAAGCTAATGCCCACTCAGTAGTGGAATGTGACCATGCACGGAAAGAAGTCAGTGTACGGACTGCAGGGTTGACGGACAAGACCTCCAAGAAAACATACACGTTTGATATG gttatgtaacttcatccaagagtttctaaactgttatgtgttatttccagACCATTTAACCTGGCAGACCGTAAGGCCAATGCTCACTCAGTATTAGATTGTGATCATGCACGGAAAGAAGTCAGTGTACGCAGTGCAGGGTTGACTGACAAGACATCTAAGAAAAGTTATACTGTTGATATGgcaagtattgttttctatacactgaggtgctggtcacataggtcatccaa Alignment from GeneWise ACCATTTAATCTGGCAGAGCGGAAAGCTAATGCCCACTCAGTAGTGGAATGTGACCATGCACGGAAAGAAGTCAGTGTACGGACTGCAGGGTTGACGGACAAGACCTCCAAGAAAACATACACGTTTGATATG--------- gttatgtaacttcatccaagagtttctaaactgttatgtgttatttccagACCATTTAACCTGGCAGACCGTAAGGCCAATGCTCACTCAGTATTAGATTGTGATCATGCACGGAAAGAAGTCAGTGTACGCAGTGCAGGGTTGACTGACAAGACATCTAAGAAAAGTTATACTGTTGATATGGCAAGTATTgttttctatacactgaggtgctggtcacataggtcatccaa #### Kif11_ID7313_3 --> 0 - 2 Original Alignment GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCgc gatgcatccaattgctttacctggatataactcgtgtttctttcctccagGTTATTGGGGCATCTACAAAGCAAATTGATGTTTATCAAAGTGTTGTACGTCCAATTCTAGATGATGTAATTATGGGCTACAATTGTACCATTTCTgtgtgagtaacaattgcctttttgactttggagcatatgggaatttctgcta Alignment from CESAR GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCgc gatgcatccaattgctttacctggatataactcgtgtttctttcctccagGTTATTGGGGCATCTACAAAGCAAATTGATGTTTATCAAAGTGTTGTACGTCCAATTCTAGATGATGTAATTATGGGCTACAATTGTACCATTTCTgtgtgagtaacaattgcctttttgactttggagcatatgggaatttctgcta Alignment from Spaln_aa2Genome GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC gatgcatccaattgctttacctggatataactcgtgtttctttcctccagGTTATTGGGGCATCTACAAAGCAAATTGATGTTTATCAAAGTGTTGTACGTCCAATTCTAGATGATGTAATTATGGGCTACAATTGTACCATTTCTGTgtgagtaacaattgcctttttgactttggagcatatgggaatttctgcta Alignment from Spaln_nt2Genome GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC gatgcatccaattgctttacctggatataactcgtgtttctttcctccagGTTATTGGGGCATCTACAAAGCAAATTGATGTTTATCAAAGTGTTGTACGTCCAATTCTAGATGATGTAATTATGGGCTACAATTGTACCATTTCTGTgtgagtaacaattgcctttttgactttggagcatatgggaatttctgcta Alignment from Pairagon GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC gatgcatccaattgctttacctggatataactcgtgtttctttcctccagGTTATTGGGGCATCTACAAAGCAAATTGATGTTTATCAAAGTGTTGTACGTCCAATTCTAGATGATGTAATTATGGGCTACAATTGTACCATTTCTGTgtgagtaacaattgcctttttgactttggagcatatgggaatttctgcta Alignment from Exonerate_protein2genome GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC gatgcatccaattgctttacctggatataactcgtgtttctttcctccagGTTATTGGGGCATCTACAAAGCAAATTGATGTTTATCAAAGTGTTGTACGTCCAATTCTAGATGATGTAATTATGGGCTACAATTGTACCATTTCTGTgtgagtaacaattgcctttttgactttggagcatatgggaatttctgcta Alignment from Exonerate_coding2genome GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC gatgcatccaattgctttacctggatataactcgtgtttctttcctccagGTTATTGGGGCATCTACAAAGCAAATTGATGTTTATCAAAGTGTTGTACGTCCAATTCTAGATGATGTAATTATGGGCTACAATTGTACCATTTCTGTgtgagtaacaattgcctttttgactttggagcatatgggaatttctgcta Alignment from GeneWise GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC gatgcatccaattgctttacctggatataactcgtgtttctttcctccagGTTATTGGGGCATCTACAAAGCAAATTGATGTTTATCAAAGTGTTGTACGTCCAATTCTAGATGATGTAATTATGGGCTACAATTGTACCATTTCTGTgtgagtaacaattgcctttttgactttggagcatatgggaatttctgcta #### Kif11_ID7331_21 --> 0 - 0 Original Alignment GACATGGATGAAGAGAGGGAGGCTCTGGAGCAGTGTACTGAGGAACTTGTAAGTCCAGAGACAACTGAACATCCCAGTGCAGATTGCTCTTCCAGCAGAGGTCTTCCATTTTTCCAG ttaagagtactgctaagtgtcataaccaatgctatcccttgggtcctcagGACATGGAGGAAGAGCGAGAAGCTCCAGAGCAGTGCACTGAGGAACTAGTAAGCCCACAGACAACAGAACACCTAAGTGCTGACTGCTCCTCCAGCCGGGGTCTTCAATTTTTCCAGgtaagtgatgattgaccacatcattggctggatggacagccaaacataca Alignment from CESAR GACATGGATGAAGAGAGGGAGGCTCTGGAGCAGTGTACTGAGGAACTTGTAAGTCCAGAGACAACTGAACATCCCAGTGCAGATTGCTCTTCCAGCAGAGGTCTTCCATTTTTCCAG ttaagagtactgctaagtgtcataaccaatgctatcccttgggtcctcagGACATGGAGGAAGAGCGAGAAGCTCCAGAGCAGTGCACTGAGGAACTAGTAAGCCCACAGACAACAGAACACCTAAGTGCTGACTGCTCCTCCAGCCGGGGTCTTCAATTTTTCCAGgtaagtgatgattgaccacatcattggctggatggacagccaaacataca Alignment from Spaln_aa2Genome GACATGGATGAAGAGAGGGAGGCTCTGGAGCAGTGTACTGAGGAACTTGTAAGTCCAGAGACAACTGAACATCCCAGTGCAGATTGCTCTTCCAGCAGAGGTCTTCCATTTTTCCAG ttaagagtactgctaagtgtcataaccaatgctatcccttgggtcctcagGACATGGAGGAAGAGCGAGAAGCTCCAGAGCAGTGCACTGAGGAACTAGTAAGCCCACAGACAACAGAACACCTAAGTGCTGACTGCTCCTCCAGCCGGGGTCTTCAATTTTTCCAGgtaagtgatgattgaccacatcattggctggatggacagccaaacataca Alignment from Spaln_nt2Genome GACATGGATGAAGAGAGGGAGGCTCTGGAGCAGTGTACTGAGGAACTTGTAAGTCCAGAGACAACTGAACATCCCAGTGCAGATTGCTCTTCCAGCAGAGGTCTTCCATTTTTCCAG ttaagagtactgctaagtgtcataaccaatgctatcccttgggtcctcagGACATGGAGGAAGAGCGAGAAGCTCCAGAGCAGTGCACTGAGGAACTAGTAAGCCCACAGACAACAGAACACCTAAGTGCTGACTGCTCCTCCAGCCGGGGTCTTCAATTTTTCCAGgtaagtgatgattgaccacatcattggctggatggacagccaaacataca Alignment from Pairagon GACATGGATGAAGAGAGGGAGGCTCTGGAGCAGTGTACTGAGGAACTTGTAAGTCCAGAGACAACTGAACATCCCAGTGCAGATTGCTCTTCCAGCAGAGGTCTTCCATTTTTCCAG ttaagagtactgctaagtgtcataaccaatgctatcccttgggtcctcagGACATGGAGGAAGAGCGAGAAGCTCCAGAGCAGTGCACTGAGGAACTAGTAAGCCCACAGACAACAGAACACCTAAGTGCTGACTGCTCCTCCAGCCGGGGTCTTCAATTTTTCCAGgtaagtgatgattgaccacatcattggctggatggacagccaaacataca Alignment from Exonerate_protein2genome GACATGGATGAAGAGAGGGAGGCTCTGGAGCAGTGTACTGAGGAACTTGTAAGTCCAGAGACAACTGAACATCCCAGTGCAGATTGCTCTTCCAGCAGAGGTCTTCCATTTTTCCAG ttaagagtactgctaagtgtcataaccaatgctatcccttgggtcctcagGACATGGAGGAAGAGCGAGAAGCTCCAGAGCAGTGCACTGAGGAACTAGTAAGCCCACAGACAACAGAACACCTAAGTGCTGACTGCTCCTCCAGCCGGGGTCTTCAATTTTTCCAGgtaagtgatgattgaccacatcattggctggatggacagccaaacataca Alignment from Exonerate_coding2genome GACATGGATGAAGAGAGGGAGGCTCTGGAGCAGTGTACTGAGGAACTTGTAAGTCCAGAGACAACTGAACATCCCAGTGCAGATTGCTCTTCCAGCAGAGGTCTTCCATTTTTCCAG ttaagagtactgctaagtgtcataaccaatgctatcccttgggtcctcagGACATGGAGGAAGAGCGAGAAGCTCCAGAGCAGTGCACTGAGGAACTAGTAAGCCCACAGACAACAGAACACCTAAGTGCTGACTGCTCCTCCAGCCGGGGTCTTCAATTTTTCCAGgtaagtgatgattgaccacatcattggctggatggacagccaaacataca Alignment from GeneWise GACATGGATGAAGAGAGGGAGGCTCTGGAGCAGTGTACTGAGGAACTTGTAAGTCCAGAGACAACTGAACATCCCAGTGCAGATTGCTCTTCCAGCAGAGGTCTTCCATTTTTCCAG ttaagagtactgctaagtgtcataaccaatgctatcccttgggtcctcagGACATGGAGGAAGAGCGAGAAGCTCCAGAGCAGTGCACTGAGGAACTAGTAAGCCCACAGACAACAGAACACCTAAGTGCTGACTGCTCCTCCAGCCGGGGTCTTCAATTTTTCCAGgtaagtgatgattgaccacatcattggctggatggacagccaaacataca #### Kif20b_ID7003_8 --> 2 - 2 Original Alignment atCTGCAGTGGGTCCAGGTATCTGACTCTAAAGAAGCATATAGACTCTTAAAACTAGGAGTGAAGCATCAGAGCGTTGCTTTCACCAAACTGAACAATGCTTCTAGTAGAag ctacatgttaaattatccattgtacaccgaggttgtcctcccttccgcagacCTGCAGTGGGTGCAGGTATCTGAATCAAAGGAGGCATATAGACTCCTTAAGCTTGGGGTAAAACATAAAAGTGTTGCCTTCTCTAAATTAAACAATGCTTCTAGCAGGaggttagctgcctcagaaattctaccctaactgatgaagaactaattgccta Alignment from CESAR atCTGCAGTGGGTCCAGGTATCTGACTCTAAAGAAGCATATAGACTCTTAAAACTAGGAGTGAAGCATCAGAGCGTTGCTTTCACCAAACTGAACAATGCTTCTAGTAGAag ctacatgttaaattatccattgtacaccgaggttgtcctcccttccgcagacCTGCAGTGGGTGCAGGTATCTGAATCAAAGGAGGCATATAGACTCCTTAAGCTTGGGGTAAAACATAAAAGTGTTGCCTTCTCTAAATTAAACAATGCTTCTAGCAGGaggttagctgcctcagaaattctaccctaactgatgaagaactaattgccta Alignment from Spaln_aa2Genome ATCTGCAGTGGGTCCAGGTATCTGACTCTAAAGAAGCATATAGACTCTTAAAACTAGGAGTGAAGCATCAGAGCGTTGCTTTCACCAAACTGAACAATGCTTCTAGTAGAAG ctacatgttaaattatccattgtacaccgaggttgtcctcccttccgcagACCTGCAGTGGGTGCAGGTATCTGAATCAAAGGAGGCATATAGACTCCTTAAGCTTGGGGTAAAACATAAAAGTGTTGCCTTCTCTAAATTAAACAATGCTTCTAGCAGGAGgttagctgcctcagaaattctaccctaactgatgaagaactaattgccta Alignment from Spaln_nt2Genome ATCTGCAGTGGGTCCAGGTATCTGACTCTAAAGAAGCATATAGACTCTTAAAACTAGGAGTGAAGCATCAGAGCGTTGCTTTCACCAAACTGAACAATGCTTCTAGTAGAAG ctacatgttaaattatccattgtacaccgaggttgtcctcccttccgcagACCTGCAGTGGGTGCAGGTATCTGAATCAAAGGAGGCATATAGACTCCTTAAGCTTGGGGTAAAACATAAAAGTGTTGCCTTCTCTAAATTAAACAATGCTTCTAGCAGGAGgttagctgcctcagaaattctaccctaactgatgaagaactaattgccta Alignment from Pairagon ATCTGCAGTGGGTCCAGGTATCTGACTCTAAAGAAGCATATAGACTCTTAAAACTAGGAGTGAAGCATCAGAGCGTTGCTTTCACCAAACTGAACAATGCTTCTAGTAGAAG ctacatgttaaattatccattgtacaccgaggttgtcctcccttccgcagACCTGCAGTGGGTGCAGGTATCTGAATCAAAGGAGGCATATAGACTCCTTAAGCTTGGGGTAAAACATAAAAGTGTTGCCTTCTCTAAATTAAACAATGCTTCTAGCAGGAGgttagctgcctcagaaattctaccctaactgatgaagaactaattgccta Alignment from Exonerate_protein2genome ATCTGCAGTGGGTCCAGGTATCTGACTCTAAAGAAGCATATAGACTCTTAAAACTAGGAGTGAAGCATCAGAGCGTTGCTTTCACCAAACTGAACAATGCTTCTAGTAGAAG ctacatgttaaattatccattgtacaccgaggttgtcctcccttccgcagACCTGCAGTGGGTGCAGGTATCTGAATCAAAGGAGGCATATAGACTCCTTAAGCTTGGGGTAAAACATAAAAGTGTTGCCTTCTCTAAATTAAACAATGCTTCTAGCAGGAGgttagctgcctcagaaattctaccctaactgatgaagaactaattgccta Alignment from Exonerate_coding2genome ATCTGCAGTGGGTCCAGGTATCTGACTCTAAAGAAGCATATAGACTCTTAAAACTAGGAGTGAAGCATCAGAGCGTTGCTTTCACCAAACTGAACAATGCTTCTAGTAGAAG ctacatgttaaattatccattgtacaccgaggttgtcctcccttccgcagACCTGCAGTGGGTGCAGGTATCTGAATCAAAGGAGGCATATAGACTCCTTAAGCTTGGGGTAAAACATAAAAGTGTTGCCTTCTCTAAATTAAACAATGCTTCTAGCAGGAGgttagctgcctcagaaattctaccctaactgatgaagaactaattgccta Alignment from GeneWise ATCTGCAGTGGGTCCAGGTATCTGACTCTAAAGAAGCATATAGACTCTTAAAACTAGGAGTGAAGCATCAGAGCGTTGCTTTCACCAAACTGAACAATGCTTCTAGTAGAAG ctacatgttaaattatccattgtacaccgaggttgtcctcccttccgcagACCTGCAGTGGGTGCAGGTATCTGAATCAAAGGAGGCATATAGACTCCTTAAGCTTGGGGTAAAACATAAAAGTGTTGCCTTCTCTAAATTAAACAATGCTTCTAGCAGGAGgttagctgcctcagaaattctaccctaactgatgaagaactaattgccta #### Kif20b_ID7004_9 --> 1 - 2 Original Alignment tCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTga tatttgaatggaagtcctcctaaatttgcttcttgctcttctctgattagtCATAGCATTTTCACTATCAGGCTATTACAAATAGAAGATTCTGAGATACCTCGTGTTACACGAGTTAGTgagtaagcgggtttcaaagctgtgggtcgttttggaaagaaagtctctgcag Alignment from CESAR tCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTga tatttgaatggaagtcctcctaaatttgcttcttgctcttctctgattagtCATAGCATTTTCACTATCAGGCTATTACAAATAGAAGATTCTGAGATACCTCGTGTTACACGAGTTAGTgagtaagcgggtttcaaagctgtgggtcgttttggaaagaaagtctctgcag Alignment from Spaln_aa2Genome TCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA tatttgaatggaagtcctcctaaatttgcttcttgctcttctctgattagTCATAGCATTTTCACTATCAGGCTATTACAAATAGAAGATTCTGAGATACCTCGTGTTACACGAGTTAGTGAgtaagcgggtttcaaagctgtgggtcgttttggaaagaaagtctctgcag Alignment from Spaln_nt2Genome TCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA tatttgaatggaagtcctcctaaatttgcttcttgctcttctctgattagTCATAGCATTTTCACTATCAGGCTATTACAAATAGAAGATTCTGAGATACCTCGTGTTACACGAGTTAGTGAgtaagcgggtttcaaagctgtgggtcgttttggaaagaaagtctctgcag Alignment from Pairagon TCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA tatttgaatggaagtcctcctaaatttgcttcttgctcttctctgattagTCATAGCATTTTCACTATCAGGCTATTACAAATAGAAGATTCTGAGATACCTCGTGTTACACGAGTTAGTGAgtaagcgggtttcaaagctgtgggtcgttttggaaagaaagtctctgcag Alignment from Exonerate_protein2genome TCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA tatttgaatggaagtcctcctaaatttgcttcttgctcttctctgattagTCATAGCATTTTCACTATCAGGCTATTACAAATAGAAGATTCTGAGATACCTCGTGTTACACGAGTTAGTGAgtaagcgggtttcaaagctgtgggtcgttttggaaagaaagtctctgcag Alignment from Exonerate_coding2genome TCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA tatttgaatggaagtcctcctaaatttgcttcttgctcttctctgattagTCATAGCATTTTCACTATCAGGCTATTACAAATAGAAGATTCTGAGATACCTCGTGTTACACGAGTTAGTGAgtaagcgggtttcaaagctgtgggtcgttttggaaagaaagtctctgcag Alignment from GeneWise TCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA tatttgaatggaagtcctcctaaatttgcttcttgctcttctctgattagTCATAGCATTTTCACTATCAGGCTATTACAAATAGAAGATTCTGAGATACCTCGTGTTACACGAGTTAGTGAgtaagcgggtttcaaagctgtgggtcgttttggaaagaaagtctctgcag #### Kif20b_ID7019_24 --> 0 - 0 Original Alignment GAATCTGAAGAGAAATATAAAGCTGATAGAAAGAAGTGGTTAGAAGAAAAAGCTGTCCTTACCACTCAAGCGAAAGAAGCAGAAAATGTACGAAACAGGGAGATGAGAAAATATGCTGACGACAGGGAGCGCTGTTTAAAGCTGCAGAATGAAGTG cccctgccaaatccattatctcatgtaactttatttcttggacttttaagGAATCAGAAGAGAAATACAAAGCAGACAGAAAGAAGTGGTTAGAAGAAAAAGCAGTCCTCACCACTCAAGCAAAAGAAGCTGAAAATGTAAGAAATAGGGAGATGAGAAAATTTGCTGATGACAGGGAGCGTTGTTTAAAGCTGCAGAATGAAGTGgtgagtggtcataggagcatattagtgaactctagcaacttagttgtggt Alignment from CESAR GAATCTGAAGAGAAATATAAAGCTGATAGAAAGAAGTGGTTAGAAGAAAAAGCTGTCCTTACCACTCAAGCGAAAGAAGCAGAAAATGTACGAAACAGGGAGATGAGAAAATATGCTGACGACAGGGAGCGCTGTTTAAAGCTGCAGAATGAAGTG cccctgccaaatccattatctcatgtaactttatttcttggacttttaagGAATCAGAAGAGAAATACAAAGCAGACAGAAAGAAGTGGTTAGAAGAAAAAGCAGTCCTCACCACTCAAGCAAAAGAAGCTGAAAATGTAAGAAATAGGGAGATGAGAAAATTTGCTGATGACAGGGAGCGTTGTTTAAAGCTGCAGAATGAAGTGgtgagtggtcataggagcatattagtgaactctagcaacttagttgtggt Alignment from Spaln_aa2Genome GAATCTGAAGAGAAATATAAAGCTGATAGAAAGAAGTGGTTAGAAGAAAAAGCTGTCCTTACCACTCAAGCGAAAGAAGCAGAAAATGTACGAAACAGGGAGATGAGAAAATATGCTGACGACAGGGAGCGCTGTTTAAAGCTGCAGAATGAAGTG cccctgccaaatccattatctcatgtaactttatttcttggacttttaagGAATCAGAAGAGAAATACAAAGCAGACAGAAAGAAGTGGTTAGAAGAAAAAGCAGTCCTCACCACTCAAGCAAAAGAAGCTGAAAATGTAAGAAATAGGGAGATGAGAAAATTTGCTGATGACAGGGAGCGTTGTTTAAAGCTGCAGAATGAAGTGgtgagtggtcataggagcatattagtgaactctagcaacttagttgtggt Alignment from Spaln_nt2Genome GAATCTGAAGAGAAATATAAAGCTGATAGAAAGAAGTGGTTAGAAGAAAAAGCTGTCCTTACCACTCAAGCGAAAGAAGCAGAAAATGTACGAAACAGGGAGATGAGAAAATATGCTGACGACAGGGAGCGCTGTTTAAAGCTGCAGAATGAAGTG cccctgccaaatccattatctcatgtaactttatttcttggacttttaagGAATCAGAAGAGAAATACAAAGCAGACAGAAAGAAGTGGTTAGAAGAAAAAGCAGTCCTCACCACTCAAGCAAAAGAAGCTGAAAATGTAAGAAATAGGGAGATGAGAAAATTTGCTGATGACAGGGAGCGTTGTTTAAAGCTGCAGAATGAAGTGgtgagtggtcataggagcatattagtgaactctagcaacttagttgtggt Alignment from Pairagon GAATCTGAAGAGAAATATAAAGCTGATAGAAAGAAGTGGTTAGAAGAAAAAGCTGTCCTTACCACTCAAGCGAAAGAAGCAGAAAATGTACGAAACAGGGAGATGAGAAAATATGCTGACGACAGGGAGCGCTGTTTAAAGCTGCAGAATGAAGTG cccctgccaaatccattatctcatgtaactttatttcttggacttttaagGAATCAGAAGAGAAATACAAAGCAGACAGAAAGAAGTGGTTAGAAGAAAAAGCAGTCCTCACCACTCAAGCAAAAGAAGCTGAAAATGTAAGAAATAGGGAGATGAGAAAATTTGCTGATGACAGGGAGCGTTGTTTAAAGCTGCAGAATGAAGTGgtgagtggtcataggagcatattagtgaactctagcaacttagttgtggt Alignment from Exonerate_protein2genome GAATCTGAAGAGAAATATAAAGCTGATAGAAAGAAGTGGTTAGAAGAAAAAGCTGTCCTTACCACTCAAGCGAAAGAAGCAGAAAATGTACGAAACAGGGAGATGAGAAAATATGCTGACGACAGGGAGCGCTGTTTAAAGCTGCAGAATGAAGTG cccctgccaaatccattatctcatgtaactttatttcttggacttttaagGAATCAGAAGAGAAATACAAAGCAGACAGAAAGAAGTGGTTAGAAGAAAAAGCAGTCCTCACCACTCAAGCAAAAGAAGCTGAAAATGTAAGAAATAGGGAGATGAGAAAATTTGCTGATGACAGGGAGCGTTGTTTAAAGCTGCAGAATGAAGTGgtgagtggtcataggagcatattagtgaactctagcaacttagttgtggt Alignment from Exonerate_coding2genome cccctgccaaatccattatctcatgtaactttatttcttggacttttaaggaatcagaagagaaatacaaagcagacagaaagaagtggttagaagaaaaagcagtcctcaccactcaagcaaaagaagctgaaaatgtaagaaatagggagatgagaaaatttgctgatgacagggagcgttgtttaaagctgcagaatgaagtggtgagtggtcataggagcatattagtgaactctagcaacttagttgtggt Alignment from GeneWise GAATCTGAAGAGAAATATAAAGCTGATAGAAAGAAGTGGTTAGAAGAAAAAGCTGTCCTTACCACTCAAGCGAAAGAAGCAGAAAATGTACGAAACAGGGAGATGAGAAAATATGCTGACGACAGGGAGCGCTGTTTAAAGCTGCAGAATGAAGTG cccctgccaaatccattatctcatgtaactttatttcttggacttttaagGAATCAGAAGAGAAATACAAAGCAGACAGAAAGAAGTGGTTAGAAGAAAAAGCAGTCCTCACCACTCAAGCAAAAGAAGCTGAAAATGTAAGAAATAGGGAGATGAGAAAATTTGCTGATGACAGGGAGCGTTGTTTAAAGCTGCAGAATGAAGTGgtgagtggtcataggagcatattagtgaactctagcaacttagttgtggt #### Klc2_ID858_8 --> 0 - 1 Original Alignment GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATg gtacttttcttagtacttttcttctccactctaggcttccccactctcagCCTTCCTGCTATCTGAAACAGGGCAAATACCATGATGCTGAGACCCTATATAAGGAAGTATTAACCTGTGCACATGAAAAGAAATGTGGCTTAGTCAATggtgaggtctccagactgtaatgaaacctctgggcctgtttcagccaatac Alignment from CESAR GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATg gtacttttcttagtacttttcttctccactctaggcttccccactctcagCCTTCCTGCTATCTGAAACAGGGCAAATACCATGATGCTGAGACCCTATATAAGGAAGTATTAACCTGTGCACATGAAAAGAAATGTGGCTTAGTCAATggtgaggtctccagactgtaatgaaacctctgggcctgtttcagccaatac Alignment from Spaln_aa2Genome GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATG gtacttttcttagtacttttcttctccactctaggcttccccactctcagCCTTCCTGCTATCTGAAACAGGGCAAATACCATGATGCTGAGACCCTATATAAGGAAGTATTAACCTGTGCACATGAAAAGAAATGTGGCTTAGTCAATGgtgaggtctccagactgtaatgaaacctctgggcctgtttcagccaatac Alignment from Spaln_nt2Genome GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATG gtacttttcttagtacttttcttctccactctaggcttccccactctcagCCTTCCTGCTATCTGAAACAGGGCAAATACCATGATGCTGAGACCCTATATAAGGAAGTATTAACCTGTGCACATGAAAAGAAATGTGGCTTAGTCAATGgtgaggtctccagactgtaatgaaacctctgggcctgtttcagccaatac Alignment from Pairagon GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATG gtacttttcttagtacttttcttctccactctaggcttccccactctcagCCTTCCTGCTATCTGAAACAGGGCAAATACCATGATGCTGAGACCCTATATAAGGAAGTATTAACCTGTGCACATGAAAAGAAATGTGGCTTAGTCAATGgtgaggtctccagactgtaatgaaacctctgggcctgtttcagccaatac Alignment from Exonerate_protein2genome GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATG gtacttttcttagtacttttcttctccactctaggcttccccactctcagCCTTCCTGCTATCTGAAACAGGGCAAATACCATGATGCTGAGACCCTATATAAGGAAGTATTAACCTGTGCACATGAAAAGAAATGTGGCTTAGTCAATGgtgaggtctccagactgtaatgaaacctctgggcctgtttcagccaatac Alignment from Exonerate_coding2genome GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATG gtacttttcttagtacttttcttctccactctaggcttccccactctcagCCTTCCTGCTATCTGAAACAGGGCAAATACCATGATGCTGAGACCCTATATAAGGAAGTATTAACCTGTGCACATGAAAAGAAATGTGGCTTAGTCAATGgtgaggtctccagactgtaatgaaacctctgggcctgtttcagccaatac Alignment from GeneWise GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATG gtacttttcttagtacttttcttctccactctaggcttccccactctcagCCTTCCTGCTATCTGAAACAGGGCAAATACCATGATGCTGAGACCCTATATAAGGAAGTATTAACCTGTGCACATGAAAAGAAATGTGGCTTAGTCAATGgtgaggtctccagactgtaatgaaacctctgggcctgtttcagccaatac #### Ldb1_ID9690_10 --> 2 - 0 Original Alignment cgGAGCCCGCACGACAGCAGCCCAGCAAACGGAGGAAACGGAAGATGTCAGGGGGTAGCACCATGAGCTCGGGGGGTGGCAACACCAACAACAGCAACAGCAAGAAGAAGAGCCCAGCCAGCACCTTCGCTCTCTCCAGCCAGGTACCT gaaacctgaggtttctggcttctatactctggccttgtccctcaccctagcaGAGCCTGCCCAACAACAACCCAGCAAA---CGGAAATGGAAGATCTCAGGG---GGCACTATGAGTTCAGGGGGAGGCAATACCAATAACAGCAACAGCAAGAAGAAGAGTGCAGCCAGCACTTTTACTCTATCGAGCCAGGTGCCTgtaaggacagcacctcctcctggatggtctgcctttccactgatgtctga Alignment from CESAR cgGAGCCCGCACGACAGCAGCCCAGCAAACGGAGGAAACGGAAGATGTCAGGGGGTAGCACCATGAGCTCGGGGGGTGGCAACACCAACAACAGCAACAGCAAGAAGAAGAGCCCAGCCAGCACCTTCGCTCTCTCCAGCCAGGTACCT gaaacctgaggtttctggcttctatactctggccttgtccctcaccctagcaGAGCCTGCCCAACAACAACCCAGCAAACGG---AAATGGAAGATCTCAGGGGGC---ACTATGAGTTCAGGGGGAGGCAATACCAATAACAGCAACAGCAAGAAGAAGAGTGCAGCCAGCACTTTTACTCTATCGAGCCAGGTGCCTgtaaggacagcacctcctcctggatggtctgcctttccactgatgtctga Alignment from Spaln_aa2Genome CGGAGCCCGCACGACAGCAGCCCAGCAAACGGAGGAAACGGAAGATGTCAGGGGGTAGCACCATGAGCTCGGGGGGTGGCAACACCAACAACAGCAACAGCAAGAAGAAGAGCCCAGCCAGCACCTTCGCTCTCTCCAGCCAGGTACCT gaaacctgaggtttctggcttctatactctggccttgtccctcaccctagCAGAGCCTGCCCAACAACAACCCAGCAAA---CGGAAATGGAAGATCTCAGGGGGC---ACTATGAGTTCAGGGGGAGGCAATACCAATAACAGCAACAGCAAGAAGAAGAGTGCAGCCAGCACTTTTACTCTATCGAGCCAGGTGCCTgtaaggacagcacctcctcctggatggtctgcctttccactgatgtctga Alignment from Spaln_nt2Genome CGGAGCCCGCACGACAGCAGCCCAGCAAACGGAGGAAACGGAAGATGTCAGGGGGTAGCACCATGAGCTCGGGGGGTGGCAACACCAACAACAGCAACAGCAAGAAGAAGAGCCCAGCCAGCACCTTCGCTCTCTCCAGCCAGGTACCT gaaacctgaggtttctggcttctatactctggccttgtccctcaccctagCAGAGCCTGCCCAACAACAACCCAGCAAAC---GGAAATGGAAGATCTCAGGGG---GCACTATGAGTTCAGGGGGAGGCAATACCAATAACAGCAACAGCAAGAAGAAGAGTGCAGCCAGCACTTTTACTCTATCGAGCCAGGTGCCTgtaaggacagcacctcctcctggatggtctgcctttccactgatgtctga Alignment from Pairagon CGGAGCCCGCACGACAGCAGCCCAGCAAACGGAGGAAACGGAAGATGTCAGGGGGTAGCACCATGAGCTCGGGGGGTGGCAACACCAACAACAGCAACAGCAAGAAGAAGAGCCCAGCCAGCACCTTCGCTCTCTCCAGCCAGGTACCT gaaacctgaggtttctggcttctatactctggccttgtccctcaccctagCAGAGCCTGCCCAACAACAACCCAGCAAAC---GGAAATGGAAGATCTCAGGGG---GCACTATGAGTTCAGGGGGAGGCAATACCAATAACAGCAACAGCAAGAAGAAGAGTGCAGCCAGCACTTTTACTCTATCGAGCCAGGTGCCTgtaaggacagcacctcctcctggatggtctgcctttccactgatgtctga Alignment from Exonerate_protein2genome CGGAGCCCGCACGACAGCAGCCCAGCAAACGGAGGAAACGGAAGATGTCAGGGGGTAGCACCATGAGCTCGGGGGGTGGCAACACCAACAACAGCAACAGCAAGAAGAAGAGCCCAGCCAGCACCTTCGCTCTCTCCAGCCAGGTACCT gaaacctgaggtttctggcttctatactctggccttgtccctcaccctagCAGAGCCTGCCCAACAACAACCCAGCAAA---CGGAAATGGAAGATCTCAGGGGGC---ACTATGAGTTCAGGGGGAGGCAATACCAATAACAGCAACAGCAAGAAGAAGAGTGCAGCCAGCACTTTTACTCTATCGAGCCAGGTGCCTgtaaggacagcacctcctcctggatggtctgcctttccactgatgtctga Alignment from Exonerate_coding2genome CGGAGCCCGCACGACAGCAGCCCAGCAAACGGAGGAAACGGAAGATGTCAGGGGGTAGCACCATGAGCTCGGGGGGTGGCAACACCAACAACAGCAACAGCAAGAAGAAGAGCCCAGCCAGCACCTTCGCTCTCTCCAGCCAGGTACCT gaaacctgaggtttctggcttctatactctggccttgtccctcaccctagCAGAGCCTGCCCAACAACAACCCAGCAAA---CGGAAATGGAAGATCTCAGGGGGC---ACTATGAGTTCAGGGGGAGGCAATACCAATAACAGCAACAGCAAGAAGAAGAGTGCAGCCAGCACTTTTACTCTATCGAGCCAGGTGCCTgtaaggacagcacctcctcctggatggtctgcctttccactgatgtctga Alignment from GeneWise CGGAGCCCGCACGACAGCAGCCCAGCAAACGGAGGAAACGGAAGATGTCAGGGGGTAGCACCATGAGCTCGGGGGGTGGCAACACCAACAACAGCAACAGCAAGAAGAAGAGCCCAGCCAGCACCTTCGCTCTCTCCAGCCAGGTACCT gaaacctgaggtttctggcttctatactctggccttgtccctcaccctagCAGAGCCTGCCCAACAACAACCCAGCAAACGG---AAATGGAAGATCTCAGGGGGC---ACTATGAGTTCAGGGGGAGGCAATACCAATAACAGCAACAGCAAGAAGAAGAGTGCAGCCAGCACTTTTACTCTATCGAGCCAGGTGCCTgtaaggacagcacctcctcctggatggtctgcctttccactgatgtctga #### Ldb1_ID9693_7 --> 0 - 0 Original Alignment GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC ttggaggaaatcaccaaagcaagggtggacaactcctgttctccccacagGTCTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGTGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtgaggtgattccagccccacctgaaccaagggctttggagtccacatct Alignment from CESAR GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC ttggaggaaatcaccaaagcaagggtggacaactcctgttctccccacagGTCTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGTGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtgaggtgattccagccccacctgaaccaagggctttggagtccacatct Alignment from Spaln_aa2Genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC ttggaggaaatcaccaaagcaagggtggacaactcctgttctccccacagGTCTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGTGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtgaggtgattccagccccacctgaaccaagggctttggagtccacatct Alignment from Spaln_nt2Genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC ttggaggaaatcaccaaagcaagggtggacaactcctgttctccccacagGTCTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGTGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtgaggtgattccagccccacctgaaccaagggctttggagtccacatct Alignment from Pairagon GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC ttggaggaaatcaccaaagcaagggtggacaactcctgttctccccacagGTCTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGTGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtgaggtgattccagccccacctgaaccaagggctttggagtccacatct Alignment from Exonerate_protein2genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC ttggaggaaatcaccaaagcaagggtggacaactcctgttctccccacagGTCTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGTGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtgaggtgattccagccccacctgaaccaagggctttggagtccacatct Alignment from Exonerate_coding2genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC ttggaggaaatcaccaaagcaagggtggacaactcctgttctccccacagGTCTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGTGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtgaggtgattccagccccacctgaaccaagggctttggagtccacatct Alignment from GeneWise GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC ttggaggaaatcaccaaagcaagggtggacaactcctgttctccccacagGTCTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGTGAACTTATTCCAAGAAGTATCCTGGCGATGCATgtgaggtgattccagccccacctgaaccaagggctttggagtccacatct #### Ldb1_ID9694_6 --> 2 - 0 Original Alignment ccATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ggctctgggtgagatgctttctctctttaccaaggtgccttgtcccctagccATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTTGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCAAACCCATGTTTACCCAGgtatgcaaagtgcagggatagcgtaacctaataccatgagacagcttttc Alignment from CESAR ccATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ggctctgggtgagatgctttctctctttaccaaggtgccttgtcccctagccATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTTGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCAAACCCATGTTTACCCAGgtatgcaaagtgcagggatagcgtaacctaataccatgagacagcttttc Alignment from Spaln_aa2Genome CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ggctctgggtgagatgctttctctctttaccaaggtgccttgtcccctagCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTTGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCAAACCCATGTTTACCCAGgtatgcaaagtgcagggatagcgtaacctaataccatgagacagcttttc Alignment from Spaln_nt2Genome CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ggctctgggtgagatgctttctctctttaccaaggtgccttgtcccctagCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTTGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCAAACCCATGTTTACCCAGgtatgcaaagtgcagggatagcgtaacctaataccatgagacagcttttc Alignment from Pairagon CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ggctctgggtgagatgctttctctctttaccaaggtgccttgtcccctagCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTTGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCAAACCCATGTTTACCCAGgtatgcaaagtgcagggatagcgtaacctaataccatgagacagcttttc Alignment from Exonerate_protein2genome CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ggctctgggtgagatgctttctctctttaccaaggtgccttgtcccctagCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTTGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCAAACCCATGTTTACCCAGgtatgcaaagtgcagggatagcgtaacctaataccatgagacagcttttc Alignment from Exonerate_coding2genome CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ggctctgggtgagatgctttctctctttaccaaggtgccttgtcccctagCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTTGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCAAACCCATGTTTACCCAGgtatgcaaagtgcagggatagcgtaacctaataccatgagacagcttttc Alignment from GeneWise ----------------------------------------------------ATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG GGCTCTGGGTGAGATGCTTTCTCTCTTTACCAAGGTGCCTTGTCCCCTAGCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTTGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCAAACCCATGTTTACCCAGgtatgcaaagtgcagggatagcgtaacctaataccatgagacagcttttc #### Ldb1_ID9696_4 --> 1 - 0 Original Alignment gAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ttggctacatatgtccacacacctatttatggatggcttttgctttctaggAGGCACAGTCCATACGGTAATCAGACTGACTATAGGATATTTGAGCTAAACAAGCGGCTACAGAATTGGACAGAAgtaagccaggatgagaggttgatgggggtgtgccttatgtggtgtttctc Alignment from CESAR gAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ttggctacatatgtccacacacctatttatggatggcttttgctttctaggAGGCACAGTCCATACGGTAATCAGACTGACTATAGGATATTTGAGCTAAACAAGCGGCTACAGAATTGGACAGAAgtaagccaggatgagaggttgatgggggtgtgcctttcactcttctacat Alignment from Spaln_aa2Genome GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ttggctacatatgtccacacacctatttatggatggcttttgctttctagGAGGCACAGTCCATACGGTAATCAGACTGACTATAGGATATTTGAGCTAAACAAGCGGCTACAGAATTGGACAGAAgtaagccaggatgagaggttgatgggggtgtgccttatgtggtgtttctc Alignment from Spaln_nt2Genome GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ttggctacatatgtccacacacctatttatggatggcttttgctttctagGAGGCACAGTCCATACGGTAATCAGACTGACTATAGGATATTTGAGCTAAACAAGCGGCTACAGAATTGGACAGAAgtaagccaggatgagaggttgatgggggtgtgccttatgtggtgtttctc Alignment from Pairagon GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ttggctacatatgtccacacacctatttatggatggcttttgctttctagGAGGCACAGTCCATACGGTAATCAGACTGACTATAGGATATTTGAGCTAAACAAGCGGCTACAGAATTGGACAGAAgtaagccaggatgagaggttgatgggggtgtgccttatgtggtgtttctc Alignment from Exonerate_protein2genome GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ttggctacatatgtccacacacctatttatggatggcttttgctttctagGAGGCACAGTCCATACGGTAATCAGACTGACTATAGGATATTTGAGCTAAACAAGCGGCTACAGAATTGGACAGAAgtaagccaggatgagaggttgatgggggtgtgccttatgtggtgtttctc Alignment from Exonerate_coding2genome GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ttggctacatatgtccacacacctatttatggatggcttttgctttctagGAGGCACAGTCCATACGGTAATCAGACTGACTATAGGATATTTGAGCTAAACAAGCGGCTACAGAATTGGACAGAAgtaagccaggatgagaggttgatgggggtgtgccttatgtggtgtttctc Alignment from GeneWise GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG-------------------------------------------------- ttggctacatatgtccacacacctatttatggatggcttttgctttctagGAGGCACAGTCCATACGGTAATCAGACTGACTATAGGATATTTGAGCTAAACAAGCGGCTACAGAATTGGACAGAAGTAAGCCAGGATGAGAGGTTGATGGGGGTGTGCCTTATGTGGTGTTTCTC #### Lipa_ID6940_3 --> 2 - 2 Original Alignment gtCCCAGACCAGTTGTGTATCTTCAGCACGGCTTGCTGGCAGATTCTAGTAACTGGGTCACAAACATTGACAACAGCAGCTTGGGCTTCCTCCTGGCGGATGCTGGCTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCTGAAGCACAAGACTCTTTCAGTTTCTCAGGATGAGTTCTGGGCCTTCag gtttaatgtttggtgaagtaacgattcatgacactaacttgtgtgctcaggtCCCAGACCAGTCGTGTATCTTCAACTTGGTTTGTTAGCAGATTCTAGTAACTGGGTCACAAACATTGATAACAGTAGCCTGGGTTTCCTT---CCAGATGCTGGTTTTGATGTATGGATGGGAAACAGTAGAGGAAAGACATGGTCTCTCAAGCACAAAATTGTGTCAGTTTCTCAGGATGAGTTTTGGGCCTTTaggtgggttgcaattccctatccttcctggaatttgtaagaatgaacaattc Alignment from CESAR gtCCCAGACCAGTTGTGTATCTTCAGCACGGCTTGCTGGCAGATTCTAGTAACTGGGTCACAAACATTGACAACAGCAGCTTGGGCTTCCTCCTGGCGGATGCTGGCTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCTGAAGCACAAGACTCTTTCAGTTTCTCAGGATGAGTTCTGGGCCTTCag gtttaatgtttggtgaagtaacgattcatgacactaacttgtgtgctcaggtCCCAGACCAGTCGTGTATCTTCAACTTGGTTTGTTAGCAGATTCTAGTAACTGGGTCACAAACATTGATAACAGTAGCCTGGGTTTCCTT---CCAGATGCTGGTTTTGATGTATGGATGGGAAACAGTAGAGGAAAGACATGGTCTCTCAAGCACAAAATTGTGTCAGTTTCTCAGGATGAGTTTTGGGCCTTTaggtgggttgcaattccctatccttcctggaatttgtaagaatgaacaattc Alignment from Spaln_aa2Genome GTCCCAGACCAGTTGTGTATCTTCAGCACGGCTTGCTGGCAGATTCTAGTAACTGGGTCACAAACATTGACAACAGCAGCTTGGGCTTCCTCCTGGCGGATGCTGGCTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCTGAAGCACAAGACTCTTTCAGTTTCTCAGGATGAGTTCTGGGCCTTCAG gtttaatgtttggtgaagtaacgattcatgacactaacttgtgtgctcagGTCCCAGACCAGTCGTGTATCTTCAACTTGGTTTGTTAGCAGATTCTAGTAACTGGGTCACAAACATTGATAACAGTAGCCTGGGTTTC---CTTCCAGATGCTGGTTTTGATGTATGGATGGGAAACAGTAGAGGAAAGACATGGTCTCTCAAGCACAAAATTGTGTCAGTTTCTCAGGATGAGTTTTGGGCCTTTAGgtgggttgcaattccctatccttcctggaatttgtaagaatgaacaattc Alignment from Spaln_nt2Genome GTCCCAGACCAGTTGTGTATCTTCAGCACGGCTTGCTGGCAGATTCTAGTAACTGGGTCACAAACATTGACAACAGCAGCTTGGGCTTCCTCCTGGCGGATGCTGGCTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCTGAAGCACAAGACTCTTTCAGTTTCTCAGGATGAGTTCTGGGCCTTCAG gtttaatgtttggtgaagtaacgattcatgacactaacttgtgtgctcagGTCCCAGACCAGTCGTGTATCTTCAACTTGGTTTGTTAGCAGATTCTAGTAACTGGGTCACAAACATTGATAACAGTAGCCTGGGTT---TCCTTCCAGATGCTGGTTTTGATGTATGGATGGGAAACAGTAGAGGAAAGACATGGTCTCTCAAGCACAAAATTGTGTCAGTTTCTCAGGATGAGTTTTGGGCCTTTAGgtgggttgcaattccctatccttcctggaatttgtaagaatgaacaattc Alignment from Pairagon GTCCCAGACCAGTTGTGTATCTTCAGCACGGCTTGCTGGCAGATTCTAGTAACTGGGTCACAAACATTGACAACAGCAGCTTGGGCTTCCTCCTGGCGGATGCTGGCTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCTGAAGCACAAGACTCTTTCAGTTTCTCAGGATGAGTTCTGGGCCTTCAG gtttaatgtttggtgaagtaacgattcatgacactaacttgtgtgctcagGTCCCAGACCAGTCGTGTATCTTCAACTTGGTTTGTTAGCAGATTCTAGTAACTGGGTCACAAACATTGATAACAGTAGCCTGGGTTTCCTTC---CAGATGCTGGTTTTGATGTATGGATGGGAAACAGTAGAGGAAAGACATGGTCTCTCAAGCACAAAATTGTGTCAGTTTCTCAGGATGAGTTTTGGGCCTTTAGgtgggttgcaattccctatccttcctggaatttgtaagaatgaacaattc Alignment from Exonerate_protein2genome GTCCCAGACCAGTTGTGTATCTTCAGCACGGCTTGCTGGCAGATTCTAGTAACTGGGTCACAAACATTGACAACAGCAGCTTGGGCTTCCTCCTGGCGGATGCTGGCTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCTGAAGCACAAGACTCTTTCAGTTTCTCAGGATGAGTTCTGGGCCTTCAG gtttaatgtttggtgaagtaacgattcatgacactaacttgtgtgctcagGTCCCAGACCAGTCGTGTATCTTCAACTTGGTTTGTTAGCAGATTCTAGTAACTGGGTCACAAACATTGATAACAGTAGCCTGGGTTTC---CTTCCAGATGCTGGTTTTGATGTATGGATGGGAAACAGTAGAGGAAAGACATGGTCTCTCAAGCACAAAATTGTGTCAGTTTCTCAGGATGAGTTTTGGGCCTTTAGgtgggttgcaattccctatccttcctggaatttgtaagaatgaacaattc Alignment from Exonerate_coding2genome GTCCCAGACCAGTTGTGTATCTTCAGCACGGCTTGCTGGCAGATTCTAGTAACTGGGTCACAAACATTGACAACAGCAGCTTGGGCTTCCTCCTGGCGGATGCTGGCTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCTGAAGCACAAGACTCTTTCAGTTTCTCAGGATGAGTTCTGGGCCTTCAG gtttaatgtttggtgaagtaacgattcatgacactaacttgtgtgctcagGTCCCAGACCAGTCGTGTATCTTCAACTTGGTTTGTTAGCAGATTCTAGTAACTGGGTCACAAACATTGATAACAGTAGCCTGGGTTTC---CTTCCAGATGCTGGTTTTGATGTATGGATGGGAAACAGTAGAGGAAAGACATGGTCTCTCAAGCACAAAATTGTGTCAGTTTCTCAGGATGAGTTTTGGGCCTTTAGgtgggttgcaattccctatccttcctggaatttgtaagaatgaacaattc Alignment from GeneWise GTCCCAGACCAGTTGTGTATCTTCAGCACGGCTTGCTGGCAGATTCTAGTAACTGGGTCACAAACATTGACAACAGCAGCTTGGGCTTCCTCCTGGCGGATGCTGGCTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCTGAAGCACAAGACTCTTTCAGTTTCTCAGGATGAGTTCTGGGCCTTCAG gtttaatgtttggtgaagtaacgattcatgacactaacttgtgtgctcagGTCCCAGACCAGTCGTGTATCTTCAACTTGGTTTGTTAGCAGATTCTAGTAACTGGGTCACAAACATTGATAACAGTAGCCTGGGTTTCCTT---CCAGATGCTGGTTTTGATGTATGGATGGGAAACAGTAGAGGAAAGACATGGTCTCTCAAGCACAAAATTGTGTCAGTTTCTCAGGATGAGTTTTGGGCCTTTAGgtgggttgcaattccctatccttcctggaatttgtaagaatgaacaattc #### Lipm_ID6883_3 --> 2 - 2 Original Alignment gaTCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGATTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTCTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCGGAAGCACAAGACCCTCTCCATAGATCAAGATGAGTTCTGGGCTTTCag tgtgttaaaagtgtggaagctgagaaagaacaccagtctcctacccctaggaTCCAGGCCTGTGGTCTTACTACAGCATGGTCTTCTCGGGGATGCTAGCAACTGGGTTTCCAACCTGCCCAACAACAGCCTGGGGTTTATTTTGGCAGATGCGGGTTTTGATGTATGGATGGGAAACAGTAGAGGAAACACCTGGTCTCAGAAGCACAAGACCCTTTCCATAGATCAAGATGATTTCTGGGCTTTCaggtgagcaaatcagtgtctctcccgctattgtccctagtgtctggaagaac Alignment from CESAR gaTCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGATTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTCTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCGGAAGCACAAGACCCTCTCCATAGATCAAGATGAGTTCTGGGCTTTCag tgtgttaaaagtgtggaagctgagaaagaacaccagtctcctacccctaggaTCCAGGCCTGTGGTCTTACTACAGCATGGTCTTCTCGGGGATGCTAGCAACTGGGTTTCCAACCTGCCCAACAACAGCCTGGGGTTTATTTTGGCAGATGCGGGTTTTGATGTATGGATGGGAAACAGTAGAGGAAACACCTGGTCTCAGAAGCACAAGACCCTTTCCATAGATCAAGATGATTTCTGGGCTTTCaggtgagcaaatcagtgtctctcccgctattgtccctagtgtctggaagaac Alignment from Spaln_aa2Genome GATCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGATTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTCTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCGGAAGCACAAGACCCTCTCCATAGATCAAGATGAGTTCTGGGCTTTCAG tgtgttaaaagtgtggaagctgagaaagaacaccagtctcctacccctagGATCCAGGCCTGTGGTCTTACTACAGCATGGTCTTCTCGGGGATGCTAGCAACTGGGTTTCCAACCTGCCCAACAACAGCCTGGGGTTTATTTTGGCAGATGCGGGTTTTGATGTATGGATGGGAAACAGTAGAGGAAACACCTGGTCTCAGAAGCACAAGACCCTTTCCATAGATCAAGATGATTTCTGGGCTTTCAGgtgagcaaatcagtgtctctcccgctattgtccctagtgtctggaagaac Alignment from Spaln_nt2Genome GATCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGATTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTCTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCGGAAGCACAAGACCCTCTCCATAGATCAAGATGAGTTCTGGGCTTTCAG tgtgttaaaagtgtggaagctgagaaagaacaccagtctcctacccctagGATCCAGGCCTGTGGTCTTACTACAGCATGGTCTTCTCGGGGATGCTAGCAACTGGGTTTCCAACCTGCCCAACAACAGCCTGGGGTTTATTTTGGCAGATGCGGGTTTTGATGTATGGATGGGAAACAGTAGAGGAAACACCTGGTCTCAGAAGCACAAGACCCTTTCCATAGATCAAGATGATTTCTGGGCTTTCAGgtgagcaaatcagtgtctctcccgctattgtccctagtgtctggaagaac Alignment from Pairagon GATCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGATTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTCTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCGGAAGCACAAGACCCTCTCCATAGATCAAGATGAGTTCTGGGCTTTCAG tgtgttaaaagtgtggaagctgagaaagaacaccagtctcctacccctagGATCCAGGCCTGTGGTCTTACTACAGCATGGTCTTCTCGGGGATGCTAGCAACTGGGTTTCCAACCTGCCCAACAACAGCCTGGGGTTTATTTTGGCAGATGCGGGTTTTGATGTATGGATGGGAAACAGTAGAGGAAACACCTGGTCTCAGAAGCACAAGACCCTTTCCATAGATCAAGATGATTTCTGGGCTTTCAGgtgagcaaatcagtgtctctcccgctattgtccctagtgtctggaagaac Alignment from Exonerate_protein2genome GATCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGATTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTCTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCGGAAGCACAAGACCCTCTCCATAGATCAAGATGAGTTCTGGGCTTTCAG tgtgttaaaagtgtggaagctgagaaagaacaccagtctcctacccctagGATCCAGGCCTGTGGTCTTACTACAGCATGGTCTTCTCGGGGATGCTAGCAACTGGGTTTCCAACCTGCCCAACAACAGCCTGGGGTTTATTTTGGCAGATGCGGGTTTTGATGTATGGATGGGAAACAGTAGAGGAAACACCTGGTCTCAGAAGCACAAGACCCTTTCCATAGATCAAGATGATTTCTGGGCTTTCAGgtgagcaaatcagtgtctctcccgctattgtccctagtgtctggaagaac Alignment from Exonerate_coding2genome GATCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGATTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTCTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCGGAAGCACAAGACCCTCTCCATAGATCAAGATGAGTTCTGGGCTTTCAG tgtgttaaaagtgtggaagctgagaaagaacaccagtctcctacccctagGATCCAGGCCTGTGGTCTTACTACAGCATGGTCTTCTCGGGGATGCTAGCAACTGGGTTTCCAACCTGCCCAACAACAGCCTGGGGTTTATTTTGGCAGATGCGGGTTTTGATGTATGGATGGGAAACAGTAGAGGAAACACCTGGTCTCAGAAGCACAAGACCCTTTCCATAGATCAAGATGATTTCTGGGCTTTCAGgtgagcaaatcagtgtctctcccgctattgtccctagtgtctggaagaac Alignment from GeneWise GATCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGATTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTCTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCGGAAGCACAAGACCCTCTCCATAGATCAAGATGAGTTCTGGGCTTTCAG tgtgttaaaagtgtggaagctgagaaagaacaccagtctcctacccctagGATCCAGGCCTGTGGTCTTACTACAGCATGGTCTTCTCGGGGATGCTAGCAACTGGGTTTCCAACCTGCCCAACAACAGCCTGGGGTTTATTTTGGCAGATGCGGGTTTTGATGTATGGATGGGAAACAGTAGAGGAAACACCTGGTCTCAGAAGCACAAGACCCTTTCCATAGATCAAGATGATTTCTGGGCTTTCAGgtgagcaaatcagtgtctctcccgctattgtccctagtgtctggaagaac #### Lipo1_ID6825_8 --> 0 - 0 Original Alignment GTAGGAAGAAGTGGT------------ATACTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG aagtcctaagtatggcctgtcagtctcactatctctgcttctgtttttagGTAGGTAGAAGTGGGAGTAGAAGTGGGATTCTTCAAGCATATGACTGGGGAAGTCCATCTCTGAATATGCAA---CTCAATCAAgtaagttcttcaaatctcctcaaggggtggaagctcctctgtatactatg Alignment from CESAR GTAGGAAGAAGT------------GGTATACTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG aagtcctaagtatggcctgtcagtctcactatctctgcttctgtttttagGTAGGTAGAAGTGGGAGTAGAAGTGGGATTCTTCAAGCATATGACTGGGGAAGTCCATCTCTGAATATGCAACTC---AATCAAgtaagttcttcaaatctcctcaaggggtggaagctcctctgtatactatg Alignment from Spaln_aa2Genome GTAGGA------------AGAAGTGGTATACTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG aagtcctaagtatggcctgtcagtctcactatctctgcttctgtttttagGTAGGTAGAAGTGGGAGTAGAAGTGGGATTCTTCAAGCATATGACTGGGGAAGTCCATCTCTGAATATGCAA---CTCAATCAAgtaagttcttcaaatctcctcaaggggtggaagctcctctgtatactatg Alignment from Spaln_nt2Genome GTAGGAAGAAGTGGTA------------TACTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG aagtcctaagtatggcctgtcagtctcactatctctgcttctgtttttagGTAGGTAGAAGTGGGAGTAGAAGTGGGATTCTTCAAGCATATGACTGGGGAAGTCCATCTCTGAATATGCAAC---TCAATCAAgtaagttcttcaaatctcctcaaggggtggaagctcctctgtatactatg Alignment from Pairagon GTAG------------GAAGAAGTGGTATACTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG aagtcctaagtatggcctgtcagtctcactatctctgcttctgtttttagGTAGGTAGAAGTGGGAGTAGAAGTGGGATTCTTCAAGCATATGACTGGGGAAGTCCATCTCTGAATATGCAAC---TCAATCAAgtaagttcttcaaatctcctcaaggggtggaagctcctctgtatactatg Alignment from Exonerate_protein2genome GTAGGA------------AGAAGTGGTATACTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG aagtcctaagtatggcctgtcagtctcactatctctgcttctgtttttagGTAGGTAGAAGTGGGAGTAGAAGTGGGATTCTTCAAGCATATGACTGGGGAAGTCCATCTCTGAATATGCAA---CTCAATCAAgtaagttcttcaaatctcctcaaggggtggaagctcctctgtatactatg Alignment from Exonerate_coding2genome GTAGGA------------AGAAGTGGTATACTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG aagtcctaagtatggcctgtcagtctcactatctctgcttctgtttttagGTAGGTAGAAGTGGGAGTAGAAGTGGGATTCTTCAAGCATATGACTGGGGAAGTCCATCTCTGAATATGCAA---CTCAATCAAgtaagttcttcaaatctcctcaaggggtggaagctcctctgtatactatg Alignment from GeneWise GTAGGAAGAAGTGGT------------ATACTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG aagtcctaagtatggcctgtcagtctcactatctctgcttctgtttttagGTAGGTAGAAGTGGGAGTAGAAGTGGGATTCTTCAAGCATATGACTGGGGAAGTCCATCTCTGAATATGCAA---CTCAATCAAgtaagttcttcaaatctcctcaaggggtggaagctcctctgtatactatg #### Lipo1_ID6827_6 --> 0 - 0 Original Alignment CTCCTCTTTGGTGAAAAAGAATTTTTTCCTACCGTAGTTTTCAGTGAGGTGGGTGCATGTGTTTGCAATATTAACTTCTTCACTGCTATATGTGCTGCTATCATGGGATCGATGGGTGGA---------------------------------------TATTCTCCAGACCAGTTAAATAAG tttagtttaactgtactgttattcttatgtttattttgtatttggaatagCTGCTGTTTGGTGAAAAAGAATTTTTTCCAGCTATAGTCTTCAGTGATGTAGGTGCATGTGTCTGTAAAATTAACTTCTTTACCTCAATATGTGCTGCCATTATGGAATCAATGGGGGGTTCATCCATTTGTGCAGCTATTATGGAATCAATGGGTGGTTATTCACCAGACCAGCTAAATAAGgtgagctggatctgccttgctaattaagaagaatttagcagtgggagttc Alignment from CESAR CTCCTCTTTGGTGAAAAAGAATTTTTTCCTACCGTAGTTTTCAGTGAGGTGGGTGCATGTGTTTGCAATATTAACTTCTTCACTGCTATATGTGCT---------------------------------------GCTATCATGGGATCGATGGGTGGATATTCTCCAGACCAGTTAAATAAG tttagtttaactgtactgttattcttatgtttattttgtatttggaatagCTGCTGTTTGGTGAAAAAGAATTTTTTCCAGCTATAGTCTTCAGTGATGTAGGTGCATGTGTCTGTAAAATTAACTTCTTTACCTCAATATGTGCTGCCATTATGGAATCAATGGGGGGTTCATCCATTTGTGCAGCTATTATGGAATCAATGGGTGGTTATTCACCAGACCAGCTAAATAAGgtgagctggatctgccttgctaattaagaagaatttagcagtgggagttc Alignment from Spaln_aa2Genome CTCCTCTTTGGTGAAAAAGAATTTTTTCCTACCGTAGTTTTCAGTGAGGTGGGTGCATGTGTTTGCAATATTAACTTCTTCACTGCTATATGTGCTGCTATCATGGGA---------------------------------------TCGATGGGTGGATATTCTCCAGACCAGTTAAATAAG tttagtttaactgtactgttattcttatgtttattttgtatttggaatagCTGCTGTTTGGTGAAAAAGAATTTTTTCCAGCTATAGTCTTCAGTGATGTAGGTGCATGTGTCTGTAAAATTAACTTCTTTACCTCAATATGTGCTGCCATTATGGAATCAATGGGGGGTTCATCCATTTGTGCAGCTATTATGGAATCAATGGGTGGTTATTCACCAGACCAGCTAAATAAGgtgagctggatctgccttgctaattaagaagaatttagcagtgggagttc Alignment from Spaln_nt2Genome CTCCTCTTTGGTGAAAAAGAATTTTTTCCTACCGTAGTTTTCAGTGAGGTGGGTGCATGTGTTTGCAATATTAACTTCTTCACTGCTATATGTGCT GCTATCATGGGATCGATGGGTGGATATTCTCCAGACCAGTTAAATAAG tttagtttaactgtactgttattcttatgtttattttgtatttggaatagCTGCTGTTTGGTGAAAAAGAATTTTTTCCAGCTATAGTCTTCAGTGATGTAGGTGCATGTGTCTGTAAAATTAACTTCTTTACCTCAATATGTGCTgccattatggaatcaatggggggttcatccatttgtgcagCTATTATGGAATCAATGGGTG-GTTATTCACCAGACCAGCTAAATAAGgtgagctggatctgccttgctaattaagaagaatttagcagtgggagttc Alignment from Pairagon CTCCTCTTTGGTGAAAAAGAATTTTTTCCTACCGTAGTTTTCAGTGAGGTGGGTGCATGTGTTTGCAATATTAACTTCTTCACTGCTATATGTGCT---------------------------------------GCTATCATGGGATCGATGGGTGGATATTCTCCAGACCAGTTAAATAAG tttagtttaactgtactgttattcttatgtttattttgtatttggaatagCTGCTGTTTGGTGAAAAAGAATTTTTTCCAGCTATAGTCTTCAGTGATGTAGGTGCATGTGTCTGTAAAATTAACTTCTTTACCTCAATATGTGCTGCCATTATGGAATCAATGGGGGGTTCATCCATTTGTGCAGCTATTATGGAATCAATGGGTGGTTATTCACCAGACCAGCTAAATAAGgtgagctggatctgccttgctaattaagaagaatttagcagtgggagttc Alignment from Exonerate_protein2genome CTCCTCTTTGGTGAAAAAGAATTTTTTCCTACCGTAGTTTTCAGTGAGGTGGGTGCATGTGTTTGCAATATTAACTTCTTCACTGCTATATGTGCTG CTATCATGGGATCGATGGGTGGATATTCTCCAGACCAGTTAAATAAG tttagtttaactgtactgttattcttatgtttattttgtatttggaatagCTGCTGTTTGGTGAAAAAGAATTTTTTCCAGCTATAGTCTTCAGTGATGTAGGTGCATGTGTCTGTAAAATTAACTTCTTTACCTCAATATGTGCTGccattatggaatcaatggggggttcatccatttgtgcagCTATTATGGAATCAATGGGTGGTTATTCACCAGACCAGCTAAATAAGgtgagctggatctgccttgctaattaagaagaatttagcagtgggagttc Alignment from Exonerate_coding2genome CTCCTCTTTGGTGAAAAAGAATTTTTTCCTACCGTAGTTTTCAGTGAGGTGGGTGCATGTGTTTGCAATATTAACTTCTTCACTGCTATATGTGCTG CTATCATGGGATCGATGGGTGGATATTCTCCAGACCAGTTAAATAAG tttagtttaactgtactgttattcttatgtttattttgtatttggaatagCTGCTGTTTGGTGAAAAAGAATTTTTTCCAGCTATAGTCTTCAGTGATGTAGGTGCATGTGTCTGTAAAATTAACTTCTTTACCTCAATATGTGCTGccattatggaatcaatggggggttcatccatttgtgcagCTATTATGGAATCAATGGGTGGTTATTCACCAGACCAGCTAAATAAGgtgagctggatctgccttgctaattaagaagaatttagcagtgggagttc Alignment from GeneWise CTCCTCTTTGGTGAAAAAGAATTTTTTCCTACCGTAGTTTTCAGTGAGGTGGGTGCATGTGTTTGCAATATTAACTTCTTCACT---------------------------------------GCTATATGTGCTGCTATCATGGGATCGATGGGTGGATATTCTCCAGACCAGTTAAATAAG tttagtttaactgtactgttattcttatgtttattttgtatttggaatagCTGCTGTTTGGTGAAAAAGAATTTTTTCCAGCTATAGTCTTCAGTGATGTAGGTGCATGTGTCTGTAAAATTAACTTCTTTACCTCAATATGTGCTGCCATTATGGAATCAATGGGGGGTTCATCCATTTGTGCAGCTATTATGGAATCAATGGGTGGTTATTCACCAGACCAGCTAAATAAGgtgagctggatctgccttgctaattaagaagaatttagcagtgggagttc #### Lipo1_ID6829_4 --> 1 - 1 Original Alignment tTTTGATCAAATGATAAAATATGACCTTCCAGCTACCATTAATTTCATTCTGGATAAAACAGGACAAAAGCAGATTTACTACATTGGCCATTCTCAAGGAACCCTTCTTg gtaacctgcccatgtccttcacccacttatctgaccccttctccttctagtTTCTATCAAATGCTCAAATATGACCTTGCAACTACCATTAACTTCATCCTGGATCAAACTGGACAGAAGCAGCTTTACTATATTGGCCACTCGCAAGGAACCATTCTAggtgagtgggtatatggacaagtcaatgatcacaattgacagccctaggtt Alignment from CESAR tTTTGATCAAATGATAAAATATGACCTTCCAGCTACCATTAATTTCATTCTGGATAAAACAGGACAAAAGCAGATTTACTACATTGGCCATTCTCAAGGAACCCTTCTTg gtaacctgcccatgtccttcacccacttatctgaccccttctccttctagtTTCTATCAAATGCTCAAATATGACCTTGCAACTACCATTAACTTCATCCTGGATCAAACTGGACAGAAGCAGCTTTACTATATTGGCCACTCGCAAGGAACCATTCTAggtgagtgggtatatggacaagtcaatgatcacaattgacagccctaggtt Alignment from Spaln_aa2Genome TTTTGATCAAATGATAAAATATGACCTTCCAGCTACCATTAATTTCATTCTGGATAAAACAGGACAAAAGCAGATTTACTACATTGGCCATTCTCAAGGAACCCTTCTTG gtaacctgcccatgtccttcacccacttatctgaccccttctccttctagTTTCTATCAAATGCTCAAATATGACCTTGCAACTACCATTAACTTCATCCTGGATCAAACTGGACAGAAGCAGCTTTACTATATTGGCCACTCGCAAGGAACCATTCTAGgtgagtgggtatatggacaagtcaatgatcacaattgacagccctaggtt Alignment from Spaln_nt2Genome TTTTGATCAAATGATAAAATATGACCTTCCAGCTACCATTAATTTCATTCTGGATAAAACAGGACAAAAGCAGATTTACTACATTGGCCATTCTCAAGGAACCCTTCTTG gtaacctgcccatgtccttcacccacttatctgaccccttctccttctagTTTCTATCAAATGCTCAAATATGACCTTGCAACTACCATTAACTTCATCCTGGATCAAACTGGACAGAAGCAGCTTTACTATATTGGCCACTCGCAAGGAACCATTCTAGgtgagtgggtatatggacaagtcaatgatcacaattgacagccctaggtt Alignment from Pairagon TTTTGATCAAATGATAAAATATGACCTTCCAGCTACCATTAATTTCATTCTGGATAAAACAGGACAAAAGCAGATTTACTACATTGGCCATTCTCAAGGAACCCTTCTTG gtaacctgcccatgtccttcacccacttatctgaccccttctccttctagTTTCTATCAAATGCTCAAATATGACCTTGCAACTACCATTAACTTCATCCTGGATCAAACTGGACAGAAGCAGCTTTACTATATTGGCCACTCGCAAGGAACCATTCTAGgtgagtgggtatatggacaagtcaatgatcacaattgacagccctaggtt Alignment from Exonerate_protein2genome TTTTGATCAAATGATAAAATATGACCTTCCAGCTACCATTAATTTCATTCTGGATAAAACAGGACAAAAGCAGATTTACTACATTGGCCATTCTCAAGGAACCCTTCTTG gtaacctgcccatgtccttcacccacttatctgaccccttctccttctagTTTCTATCAAATGCTCAAATATGACCTTGCAACTACCATTAACTTCATCCTGGATCAAACTGGACAGAAGCAGCTTTACTATATTGGCCACTCGCAAGGAACCATTCTAGgtgagtgggtatatggacaagtcaatgatcacaattgacagccctaggtt Alignment from Exonerate_coding2genome TTTTGATCAAATGATAAAATATGACCTTCCAGCTACCATTAATTTCATTCTGGATAAAACAGGACAAAAGCAGATTTACTACATTGGCCATTCTCAAGGAACCCTTCTTG gtaacctgcccatgtccttcacccacttatctgaccccttctccttctagTTTCTATCAAATGCTCAAATATGACCTTGCAACTACCATTAACTTCATCCTGGATCAAACTGGACAGAAGCAGCTTTACTATATTGGCCACTCGCAAGGAACCATTCTAGgtgagtgggtatatggacaagtcaatgatcacaattgacagccctaggtt Alignment from GeneWise TTTTGATCAAATGATAAAATATGACCTTCCAGCTACCATTAATTTCATTCTGGATAAAACAGGACAAAAGCAGATTTACTACATTGGCCATTCTCAAGGAACCCTTCTTG gtaacctgcccatgtccttcacccacttatctgaccccttctccttctagTTTCTATCAAATGCTCAAATATGACCTTGCAACTACCATTAACTTCATCCTGGATCAAACTGGACAGAAGCAGCTTTACTATATTGGCCACTCGCAAGGAACCATTCTAGgtgagtgggtatatggacaagtcaatgatcacaattgacagccctaggtt #### Lipo1_ID6830_3 --> 2 - 2 Original Alignment ccCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACAC---GTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTag aacatttgatgctctaagtatgggtgcctttcaattgttttatgatttagccCCAAAGATGATAGTATTTTGCCAGCATGGATTACCTGCTACACCTGGTGCATGGGTTTGTAATTCACCCATTAACAGCCTGGCCTTCATCTTGGCAGATGCTGGATATGATGTTTGGATGGGAAGCAGCCGAGGAAGTACCTGGTCAAAAAAGCATGAAGTTACAGTCAATCCAGATTCTCAAGAGTTCTGGGATTTTaggtaagtagtctctccccaatatttttacatcttgtgaaggttaaaaggga Alignment from CESAR ccCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACAC---GTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTag aacatttgatgctctaagtatgggtgcctttcaattgttttatgatttagccCCAAAGATGATAGTATTTTGCCAGCATGGATTACCTGCTACACCTGGTGCATGGGTTTGTAATTCACCCATTAACAGCCTGGCCTTCATCTTGGCAGATGCTGGATATGATGTTTGGATGGGAAGCAGCCGAGGAAGTACCTGGTCAAAAAAGCATGAAGTTACAGTCAATCCAGATTCTCAAGAGTTCTGGGATTTTaggtaagtagtctctccccaatatttttacatcttgtgaaggttaaaaggga Alignment from Spaln_aa2Genome CCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACAC---GTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAG aacatttgatgctctaagtatgggtgcctttcaattgttttatgatttagCCCCAAAGATGATAGTATTTTGCCAGCATGGATTACCTGCTACACCTGGTGCATGGGTTTGTAATTCACCCATTAACAGCCTGGCCTTCATCTTGGCAGATGCTGGATATGATGTTTGGATGGGAAGCAGCCGAGGAAGTACCTGGTCAAAAAAGCATGAAGTTACAGTCAATCCAGATTCTCAAGAGTTCTGGGATTTTAGgtaagtagtctctccccaatatttttacatcttgtgaaggttaaaaggga Alignment from Spaln_nt2Genome CCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACACGTGG---CCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAG aacatttgatgctctaagtatgggtgcctttcaattgttttatgatttagCCCCAAAGATGATAGTATTTTGCCAGCATGGATTACCTGCTACACCTGGTGCATGGGTTTGTAATTCACCCATTAACAGCCTGGCCTTCATCTTGGCAGATGCTGGATATGATGTTTGGATGGGAAGCAGCCGAGGAAGTACCTGGTCAAAAAAGCATGAAGTTACAGTCAATCCAGATTCTCAAGAGTTCTGGGATTTTAGgtaagtagtctctccccaatatttttacatcttgtgaaggttaaaaggga Alignment from Pairagon CCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACACGTGG---CCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAG aacatttgatgctctaagtatgggtgcctttcaattgttttatgatttagCCCCAAAGATGATAGTATTTTGCCAGCATGGATTACCTGCTACACCTGGTGCATGGGTTTGTAATTCACCCATTAACAGCCTGGCCTTCATCTTGGCAGATGCTGGATATGATGTTTGGATGGGAAGCAGCCGAGGAAGTACCTGGTCAAAAAAGCATGAAGTTACAGTCAATCCAGATTCTCAAGAGTTCTGGGATTTTAGgtaagtagtctctccccaatatttttacatcttgtgaaggttaaaaggga Alignment from Exonerate_protein2genome CCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACAC---GTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAG aacatttgatgctctaagtatgggtgcctttcaattgttttatgatttagCCCCAAAGATGATAGTATTTTGCCAGCATGGATTACCTGCTACACCTGGTGCATGGGTTTGTAATTCACCCATTAACAGCCTGGCCTTCATCTTGGCAGATGCTGGATATGATGTTTGGATGGGAAGCAGCCGAGGAAGTACCTGGTCAAAAAAGCATGAAGTTACAGTCAATCCAGATTCTCAAGAGTTCTGGGATTTTAGgtaagtagtctctccccaatatttttacatcttgtgaaggttaaaaggga Alignment from Exonerate_coding2genome CCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACAC---GTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAG aacatttgatgctctaagtatgggtgcctttcaattgttttatgatttagCCCCAAAGATGATAGTATTTTGCCAGCATGGATTACCTGCTACACCTGGTGCATGGGTTTGTAATTCACCCATTAACAGCCTGGCCTTCATCTTGGCAGATGCTGGATATGATGTTTGGATGGGAAGCAGCCGAGGAAGTACCTGGTCAAAAAAGCATGAAGTTACAGTCAATCCAGATTCTCAAGAGTTCTGGGATTTTAGgtaagtagtctctccccaatatttttacatcttgtgaaggttaaaaggga Alignment from GeneWise CCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACAC---GTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAG aacatttgatgctctaagtatgggtgcctttcaattgttttatgatttagCCCCAAAGATGATAGTATTTTGCCAGCATGGATTACCTGCTACACCTGGTGCATGGGTTTGTAATTCACCCATTAACAGCCTGGCCTTCATCTTGGCAGATGCTGGATATGATGTTTGGATGGGAAGCAGCCGAGGAAGTACCTGGTCAAAAAAGCATGAAGTTACAGTCAATCCAGATTCTCAAGAGTTCTGGGATTTTAGgtaagtagtctctccccaatatttttacatcttgtgaaggttaaaaggga #### Loxl4_ID8560_13 --> 0 - 1 Original Alignment GTGGTTGTGAACCCCACAAACGAT------GTTGCAGAGTCCGATTTCTCCAATAACATGATACGGTGCCGCTGCAAGTATGATGGACAGCGAGTCTGGTTGCACAACTGCCACACAg ttatgctttatgtaacaacagagcactgtgtttttgtttttctgtcacagGTTGTTATAAACCCCACTAATGATGATGATGTAGCAGTGTCAGATTTCTCAAATAACATGGTACGCTGCCGTTGTAGGTATGATGGTCAACAAGTCTGGCTGCACAACTGCTACACAggtgagtgcatttgtatgtatgagaacctttcccggtactgattatctaat Alignment from CESAR GTGGTTGTGAACCCCACAAAC------GATGTTGCAGAGTCCGATTTCTCCAATAACATGATACGGTGCCGCTGCAAGTATGATGGACAGCGAGTCTGGTTGCACAACTGCCACACAg ttatgctttatgtaacaacagagcactgtgtttttgtttttctgtcacagGTTGTTATAAACCCCACTAATGATGATGATGTAGCAGTGTCAGATTTCTCAAATAACATGGTACGCTGCCGTTGTAGGTATGATGGTCAACAAGTCTGGCTGCACAACTGCTACACAggtgagtgcatttgtatgtatgagaacctttcccggtactgattatctaat Alignment from Spaln_aa2Genome GTGGTTGTGAACCCCACAAAC------GATGTTGCAGAGTCCGATTTCTCCAATAACATGATACGGTGCCGCTGCAAGTATGATGGACAGCGAGTCTGGTTGCACAACTGCCACACAG ttatgctttatgtaacaacagagcactgtgtttttgtttttctgtcacagGTTGTTATAAACCCCACTAATGATGATGATGTAGCAGTGTCAGATTTCTCAAATAACATGGTACGCTGCCGTTGTAGGTATGATGGTCAACAAGTCTGGCTGCACAACTGCTACACAGgtgagtgcatttgtatgtatgagaacctttcccggtactgattatctaat Alignment from Spaln_nt2Genome GTGGTTGTGAACCCCACAAACGATGTTG------CAGAGTCCGATTTCTCCAATAACATGATACGGTGCCGCTGCAAGTATGATGGACAGCGAGTCTGGTTGCACAACTGCCACACAG ttatgctttatgtaacaacagagcactgtgtttttgtttttctgtcacagGTTGTTATAAACCCCACTAATGATGATGATGTAGCAGTGTCAGATTTCTCAAATAACATGGTACGCTGCCGTTGTAGGTATGATGGTCAACAAGTCTGGCTGCACAACTGCTACACAGgtgagtgcatttgtatgtatgagaacctttcccggtactgattatctaat Alignment from Pairagon GTGGTTGTGAACCCCACAA------ACGATGTTGCAGAGTCCGATTTCTCCAATAACATGATACGGTGCCGCTGCAAGTATGATGGACAGCGAGTCTGGTTGCACAACTGCCACACAG ttatgctttatgtaacaacagagcactgtgtttttgtttttctgtcacagGTTGTTATAAACCCCACTAATGATGATGATGTAGCAGTGTCAGATTTCTCAAATAACATGGTACGCTGCCGTTGTAGGTATGATGGTCAACAAGTCTGGCTGCACAACTGCTACACAGgtgagtgcatttgtatgtatgagaacctttcccggtactgattatctaat Alignment from Exonerate_protein2genome ttatgctttatgtaacaacagagcactgtgtttttgtttttctgtcacaggttgttataaaccccactaatgatgatgatgtagcagtgtcagatttctcaaataacatggtacgctgccgttgtaggtatgatggtcaacaagtctggctgcacaactgctacacaggtgagtgcatttgtatgtatgagaacctttcccggtactgattatctaat Alignment from Exonerate_coding2genome ttatgctttatgtaacaacagagcactgtgtttttgtttttctgtcacaggttgttataaaccccactaatgatgatgatgtagcagtgtcagatttctcaaataacatggtacgctgccgttgtaggtatgatggtcaacaagtctggctgcacaactgctacacaggtgagtgcatttgtatgtatgagaacctttcccggtactgattatctaat Alignment from GeneWise GTGGTTGTGAACCCCACAAAC------GATGTTGCAGAGTCCGATTTCTCCAATAACATGATACGGTGCCGCTGCAAGTATGATGGACAGCGAGTCTGGTTGCACAACTGCCACACAG ttatgctttatgtaacaacagagcactgtgtttttgtttttctgtcacagGTTGTTATAAACCCCACTAATGATGATGATGTAGCAGTGTCAGATTTCTCAAATAACATGGTACGCTGCCGTTGTAGGTATGATGGTCAACAAGTCTGGCTGCACAACTGCTACACAGgtgagtgcatttgtatgtatgagaacctttcccggtactgattatctaat #### Loxl4_ID8561_12 --> 2 - 0 Original Alignment gaGTGCAGCGGCGCTATGCATGTGCCAACTTTGGGGAACAGGGAGTGGCTGTAGGCTGCTGGGACACCTACCGGCATGACATCGATTGCCAGTGGGTGGATATCACAGATGTGGGTCCAGGGGACTATATCTTCCAG acgtaaaatgcccgggcacttctgcctcatcctggtttgtgtctctgcagggGTACAACGTCGCTATGCATATGCTAATTTCGGAGAGCAAGGAGTTGCAGTAGGTTGCTGGGACACCTACCAGCATGACAGTGATTGTCAGTGGGTGGATATCAAAGAG---GTTCCAGGGGACTACATCTTCCAGgtgagactcaggtcaggacatacactccacgttttactgtatgttgcttc Alignment from CESAR gaGTGCAGCGGCGCTATGCATGTGCCAACTTTGGGGAACAGGGAGTGGCTGTAGGCTGCTGGGACACCTACCGGCATGACATCGATTGCCAGTGGGTGGATATCACAGATGTGGGTCCAGGGGACTATATCTTCCAG acgtaaaatgcccgggcacttctgcctcatcctggtttgtgtctctgcagggGTACAACGTCGCTATGCATATGCTAATTTCGGAGAGCAAGGAGTTGCAGTAGGTTGCTGGGACACCTACCAGCATGACAGTGATTGTCAGTGGGTGGATATCAAAGAGGTT---CCAGGGGACTACATCTTCCAGgtgagactcaggtcaggacatacactccacgttttactgtatgttgcttc Alignment from Spaln_aa2Genome GAGTGCAGCGGCGCTATGCATGTGCCAACTTTGGGGAACAGGGAGTGGCTGTAGGCTGCTGGGACACCTACCGGCATGACATCGATTGCCAGTGGGTGGATATCACAGATGTGGGTCCAGGGGACTATATCTTCCAG acgtaaaatgcccgggcacttctgcctcatcctggtttgtgtctctgcagGGGTACAACGTCGCTATGCATATGCTAATTTCGGAGAGCAAGGAGTTGCAGTAGGTTGCTGGGACACCTACCAGCATGACAGTGATTGTCAGTGGGTGGATATCAAAGAGGTT---CCAGGGGACTACATCTTCCAGgtgagactcaggtcaggacatacactccacgttttactgtatgttgcttc Alignment from Spaln_nt2Genome GAGTGCAGCGGCGCTATGCATGTGCCAACTTTGGGGAACAGGGAGTGGCTGTAGGCTGCTGGGACACCTACCGGCATGACATCGATTGCCAGTGGGTGGATATCACAGATGTGGGTCCAGGGGACTATATCTTCCAG acgtaaaatgcccgggcacttctgcctcatcctggtttgtgtctctgcagGGGTACAACGTCGCTATGCATATGCTAATTTCGGAGAGCAAGGAGTTGCAGTAGGTTGCTGGGACACCTACCAGCATGACAGTGATTGTCAGTGGGTGGATATCAAAGA---GGTTCCAGGGGACTACATCTTCCAGgtgagactcaggtcaggacatacactccacgttttactgtatgttgcttc Alignment from Pairagon GAGTGCAGCGGCGCTATGCATGTGCCAACTTTGGGGAACAGGGAGTGGCTGTAGGCTGCTGGGACACCTACCGGCATGACATCGATTGCCAGTGGGTGGATATCACAGATGTGGGTCCAGGGGACTATATCTTCCAG acgtaaaatgcccgggcacttctgcctcatcctggtttgtgtctctgcagGGGTACAACGTCGCTATGCATATGCTAATTTCGGAGAGCAAGGAGTTGCAGTAGGTTGCTGGGACACCTACCAGCATGACAGTGATTGTCAGTGGGTGGATATCAAAGAGGT---TCCAGGGGACTACATCTTCCAGgtgagactcaggtcaggacatacactccacgttttactgtatgttgcttc Alignment from Exonerate_protein2genome GAGTGCAGCGGCGCTATGCATGTGCCAACTTTGGGGAACAGGGAGTGGCTGTAGGCTGCTGGGACACCTACCGGCATGACATCGATTGCCAGTGGGTGGATATCACAGATGTGGGTCCAGGGGACTATATCTTCCAG acgtaaaatgcccgggcacttctgcctcatcctggtttgtgtctctgcagGGGTACAACGTCGCTATGCATATGCTAATTTCGGAGAGCAAGGAGTTGCAGTAGGTTGCTGGGACACCTACCAGCATGACAGTGATTGTCAGTGGGTGGATATCAAAGAGGTT---CCAGGGGACTACATCTTCCAGgtgagactcaggtcaggacatacactccacgttttactgtatgttgcttc Alignment from Exonerate_coding2genome acgtaaaatgcccgggcacttctgcctcatcctggtttgtgtctctgcaggggtacaacgtcgctatgcatatgctaatttcggagagcaaggagttgcagtaggttgctgggacacctaccagcatgacagtgattgtcagtgggtggatatcaaagaggttccaggggactacatcttccaggtgagactcaggtcaggacatacactccacgttttactgtatgttgcttc Alignment from GeneWise GAGTGCAGCGGCGCTATGCATGTGCCAACTTTGGGGAACAGGGAGTGGCTGTAGGCTGCTGGGACACCTACCGGCATGACATCGATTGCCAGTGGGTGGATATCACAGATGTGGGTCCAGGGGACTATATCTTCCAG acgtaaaatgcccgggcacttctgcctcatcctggtttgtgtctctgcagGGGTACAACGTCGCTATGCATATGCTAATTTCGGAGAGCAAGGAGTTGCAGTAGGTTGCTGGGACACCTACCAGCATGACAGTGATTGTCAGTGGGTGGATATCAAAGAGGTT---CCAGGGGACTACATCTTCCAGgtgagactcaggtcaggacatacactccacgttttactgtatgttgcttc #### Lrp5_ID107_17 --> 2 - 1 Original Alignment caGCCCATCCTTGTGCCCGAGACAATGGCGGCTGCTCCCACATCTGTATCGCCAAGGGTGATGGAACACCGCGCTGCTCGTGCCCTGTCCACCTGGTGCTCCTGCAGAACCTGCTGACTTGTGGTg gttattgctaaggtaatgctgagactacttttgctgtgattccttttcagcaGCC---CCTTGTGCACATGCTAATGGTGGTTGCTCCCATATCTGTATTGCTAAGGGTGATGGGACACCACATTGCTCATGCCCTGTACACTTGGTTCTCCTGCAGAATCTATTGGCATGTGGTggtaggtagtaatctttgaataccatgcaaacattcttattgaaccaatag Alignment from CESAR caGCCCATCCTTGTGCCCGAGACAATGGCGGCTGCTCCCACATCTGTATCGCCAAGGGTGATGGAACACCGCGCTGCTCGTGCCCTGTCCACCTGGTGCTCCTGCAGAACCTGCTGACTTGTGGTg gttattgctaaggtaatgctgagactacttttgctgtgattccttttcagcaGCC---CCTTGTGCACATGCTAATGGTGGTTGCTCCCATATCTGTATTGCTAAGGGTGATGGGACACCACATTGCTCATGCCCTGTACACTTGGTTCTCCTGCAGAATCTATTGGCATGTGGTggtaggtagtaatctttgaataccatgcaaacattcttattgaaccaatag Alignment from Spaln_aa2Genome CAGCCCATCCTTGTGCCCGAGACAATGGCGGCTGCTCCCACATCTGTATCGCCAAGGGTGATGGAACACCGCGCTGCTCGTGCCCTGTCCACCTGGTGCTCCTGCAGAACCTGCTGACTTGTGGTG gttattgctaaggtaatgctgagactacttttgctgtgattccttttcagCAGCC---CCTTGTGCACATGCTAATGGTGGTTGCTCCCATATCTGTATTGCTAAGGGTGATGGGACACCACATTGCTCATGCCCTGTACACTTGGTTCTCCTGCAGAATCTATTGGCATGTGGTGgtaggtagtaatctttgaataccatgcaaacattcttattgaaccaatag Alignment from Spaln_nt2Genome CAGCCCATCCTTGTGCCCGAGACAATGGCGGCTGCTCCCACATCTGTATCGCCAAGGGTGATGGAACACCGCGCTGCTCGTGCCCTGTCCACCTGGTGCTCCTGCAGAACCTGCTGACTTGTGGTG gttattgctaaggtaatgctgagactacttttgctgtgattccttttcagCAGCC---CCTTGTGCACATGCTAATGGTGGTTGCTCCCATATCTGTATTGCTAAGGGTGATGGGACACCACATTGCTCATGCCCTGTACACTTGGTTCTCCTGCAGAATCTATTGGCATGTGGTGgtaggtagtaatctttgaataccatgcaaacattcttattgaaccaatag Alignment from Pairagon CAGCCCATCCTTGTGCCCGAGACAATGGCGGCTGCTCCCACATCTGTATCGCCAAGGGTGATGGAACACCGCGCTGCTCGTGCCCTGTCCACCTGGTGCTCCTGCAGAACCTGCTGACTTGTGGTG gttattgctaaggtaatgctgagactacttttgctgtgattccttttcagCAGCC---CCTTGTGCACATGCTAATGGTGGTTGCTCCCATATCTGTATTGCTAAGGGTGATGGGACACCACATTGCTCATGCCCTGTACACTTGGTTCTCCTGCAGAATCTATTGGCATGTGGTGgtaggtagtaatctttgaataccatgcaaacattcttattgaaccaatag Alignment from Exonerate_protein2genome CAGCCCATCCTTGTGCCCGAGACAATGGCGGCTGCTCCCACATCTGTATCGCCAAGGGTGATGGAACACCGCGCTGCTCGTGCCCTGTCCACCTGGTGCTCCTGCAGAACCTGCTGACTTGTGGTG gttattgctaaggtaatgctgagactacttttgctgtgattccttttcagCAGCC---CCTTGTGCACATGCTAATGGTGGTTGCTCCCATATCTGTATTGCTAAGGGTGATGGGACACCACATTGCTCATGCCCTGTACACTTGGTTCTCCTGCAGAATCTATTGGCATGTGGTGgtaggtagtaatctttgaataccatgcaaacattcttattgaaccaatag Alignment from Exonerate_coding2genome CAGCCCATCCTTGTGCCCGAGACAATGGCGGCTGCTCCCACATCTGTATCGCCAAGGGTGATGGAACACCGCGCTGCTCGTGCCCTGTCCACCTGGTGCTCCTGCAGAACCTGCTGACTTGTGGTG gttattgctaaggtaatgctgagactacttttgctgtgattccttttcagCAGCC---CCTTGTGCACATGCTAATGGTGGTTGCTCCCATATCTGTATTGCTAAGGGTGATGGGACACCACATTGCTCATGCCCTGTACACTTGGTTCTCCTGCAGAATCTATTGGCATGTGGTGgtaggtagtaatctttgaataccatgcaaacattcttattgaaccaatag Alignment from GeneWise CAGCCCATCCTTGTGCCCGAGACAATGGCGGCTGCTCCCACATCTGTATCGCCAAGGGTGATGGAACACCGCGCTGCTCGTGCCCTGTCCACCTGGTGCTCCTGCAGAACCTGCTGACTTGTGGTG gttattgctaaggtaatgctgagactacttttgctgtgattccttttcagCAGCC---CCTTGTGCACATGCTAATGGTGGTTGCTCCCATATCTGTATTGCTAAGGGTGATGGGACACCACATTGCTCATGCCCTGTACACTTGGTTCTCCTGCAGAATCTATTGGCATGTGGTGgtaggtagtaatctttgaataccatgcaaacattcttattgaaccaatag #### Lrp5_ID117_7 --> 1 - 0 Original Alignment cCTCATGTACTGGACAGACTGGGGGGAGAACCCCAAAATCGAATGCGCCAACCTAGATGGGAGAGATCGGCATGTCCTGGTGAACACCTCCCTTGGGTGGCCCAACGGACTGGCCCTGGACCTGCAGGAGGGCAAGCTGTACTGGGGGGATGCCAAAACTGATAAAATCGAG ctagacttgtagtgcatactttcttcctacctgatatccactccttccagcTTCATGTACTGGTCAGATTGGGGGGAAAACTCCAAGATTGAATGTAAAAATTTGGATGGAAGGGACCGGCGTATTCTAGTGAATACTTCACTTGGATGGCCGAATGGGCTGGCTCTGGACCTACAAGAAGGCAAGCTGTACTGGGGGGATGCCAAAACAGACAAAATTGAGgtaaggagtgcatgttagcagaaataacagatctgatgtagttgaaatta Alignment from CESAR cCTCATGTACTGGACAGACTGGGGGGAGAACCCCAAAATCGAATGCGCCAACCTAGATGGGAGAGATCGGCATGTCCTGGTGAACACCTCCCTTGGGTGGCCCAACGGACTGGCCCTGGACCTGCAGGAGGGCAAGCTGTACTGGGGGGATGCCAAAACTGATAAAATCGAG ctagacttgtagtgcatactttcttcctacctgatatccactccttccagcTTCATGTACTGGTCAGATTGGGGGGAAAACTCCAAGATTGAATGTAAAAATTTGGATGGAAGGGACCGGCGTATTCTAGTGAATACTTCACTTGGATGGCCGAATGGGCTGGCTCTGGACCTACAAGAAGGCAAGCTGTACTGGGGGGATGCCAAAACAGACAAAATTGAGgtaaggagtgcatgttagcagaaataacagatctgatgtagttgaaatta Alignment from Spaln_aa2Genome CCTCATGTACTGGACAGACTGGGGGGAGAACCCCAAAATCGAATGCGCCAACCTAGATGGGAGAGATCGGCATGTCCTGGTGAACACCTCCCTTGGGTGGCCCAACGGACTGGCCCTGGACCTGCAGGAGGGCAAGCTGTACTGGGGGGATGCCAAAACTGATAAAATCGAG ctagacttgtagtgcatactttcttcctacctgatatccactccttccagCTTCATGTACTGGTCAGATTGGGGGGAAAACTCCAAGATTGAATGTAAAAATTTGGATGGAAGGGACCGGCGTATTCTAGTGAATACTTCACTTGGATGGCCGAATGGGCTGGCTCTGGACCTACAAGAAGGCAAGCTGTACTGGGGGGATGCCAAAACAGACAAAATTGAGgtaaggagtgcatgttagcagaaataacagatctgatgtagttgaaatta Alignment from Spaln_nt2Genome CCTCATGTACTGGACAGACTGGGGGGAGAACCCCAAAATCGAATGCGCCAACCTAGATGGGAGAGATCGGCATGTCCTGGTGAACACCTCCCTTGGGTGGCCCAACGGACTGGCCCTGGACCTGCAGGAGGGCAAGCTGTACTGGGGGGATGCCAAAACTGATAAAATCGAG ctagacttgtagtgcatactttcttcctacctgatatccactccttccagCTTCATGTACTGGTCAGATTGGGGGGAAAACTCCAAGATTGAATGTAAAAATTTGGATGGAAGGGACCGGCGTATTCTAGTGAATACTTCACTTGGATGGCCGAATGGGCTGGCTCTGGACCTACAAGAAGGCAAGCTGTACTGGGGGGATGCCAAAACAGACAAAATTGAGgtaaggagtgcatgttagcagaaataacagatctgatgtagttgaaatta Alignment from Pairagon CCTCATGTACTGGACAGACTGGGGGGAGAACCCCAAAATCGAATGCGCCAACCTAGATGGGAGAGATCGGCATGTCCTGGTGAACACCTCCCTTGGGTGGCCCAACGGACTGGCCCTGGACCTGCAGGAGGGCAAGCTGTACTGGGGGGATGCCAAAACTGATAAAATCGAG ctagacttgtagtgcatactttcttcctacctgatatccactccttccagCTTCATGTACTGGTCAGATTGGGGGGAAAACTCCAAGATTGAATGTAAAAATTTGGATGGAAGGGACCGGCGTATTCTAGTGAATACTTCACTTGGATGGCCGAATGGGCTGGCTCTGGACCTACAAGAAGGCAAGCTGTACTGGGGGGATGCCAAAACAGACAAAATTGAGgtaaggagtgcatgttagcagaaataacagatctgatgtagttgaaatta Alignment from Exonerate_protein2genome CCTCATGTACTGGACAGACTGGGGGGAGAACCCCAAAATCGAATGCGCCAACCTAGATGGGAGAGATCGGCATGTCCTGGTGAACACCTCCCTTGGGTGGCCCAACGGACTGGCCCTGGACCTGCAGGAGGGCAAGCTGTACTGGGGGGATGCCAAAACTGATAAAATCGAG ctagacttgtagtgcatactttcttcctacctgatatccactccttccagCTTCATGTACTGGTCAGATTGGGGGGAAAACTCCAAGATTGAATGTAAAAATTTGGATGGAAGGGACCGGCGTATTCTAGTGAATACTTCACTTGGATGGCCGAATGGGCTGGCTCTGGACCTACAAGAAGGCAAGCTGTACTGGGGGGATGCCAAAACAGACAAAATTGAGgtaaggagtgcatgttagcagaaataacagatctgatgtagttgaaatta Alignment from Exonerate_coding2genome CCTCATGTACTGGACAGACTGGGGGGAGAACCCCAAAATCGAATGCGCCAACCTAGATGGGAGAGATCGGCATGTCCTGGTGAACACCTCCCTTGGGTGGCCCAACGGACTGGCCCTGGACCTGCAGGAGGGCAAGCTGTACTGGGGGGATGCCAAAACTGATAAAATCGAG ctagacttgtagtgcatactttcttcctacctgatatccactccttccagCTTCATGTACTGGTCAGATTGGGGGGAAAACTCCAAGATTGAATGTAAAAATTTGGATGGAAGGGACCGGCGTATTCTAGTGAATACTTCACTTGGATGGCCGAATGGGCTGGCTCTGGACCTACAAGAAGGCAAGCTGTACTGGGGGGATGCCAAAACAGACAAAATTGAGgtaaggagtgcatgttagcagaaataacagatctgatgtagttgaaatta Alignment from GeneWise CCTCATGTACTGGACAGACTGGGGGGAGAACCCCAAAATCGAATGCGCCAACCTAGATGGGAGAGATCGGCATGTCCTGGTGAACACCTCCCTTGGGTGGCCCAACGGACTGGCCCTGGACCTGCAGGAGGGCAAGCTGTACTGGGGGGATGCCAAAACTGATAAAATCGAG ctagacttgtagtgcatactttcttcctacctgatatccactccttccagCTTCATGTACTGGTCAGATTGGGGGGAAAACTCCAAGATTGAATGTAAAAATTTGGATGGAAGGGACCGGCGTATTCTAGTGAATACTTCACTTGGATGGCCGAATGGGCTGGCTCTGGACCTACAAGAAGGCAAGCTGTACTGGGGGGATGCCAAAACAGACAAAATTGAGgtaaggagtgcatgttagcagaaataacagatctgatgtagttgaaatta #### Lrp5_ID122_4 --> 1 - 1 Original Alignment gCAGAAGGTGGTGGAGGGCAGCCTCACTCACCCTTTTGCCCTGACACTCTCTGGGGACACACTCTACTGGACAGACTGGCAGACCCGCTCCATCCACGCCTGCAACAAGTGGACAGGGGAGCAGAGGAAGGAGATCCTTAGTGCTCTGTACTCACCCATGGACATCCAAGTGCTGAGCCAGGAGCGGCAGCCTCCCt catgatggcctgtccccctgtattagaacctgtgcttttcttactcaaagtCAGAAAGTTGTGGAGGGCAGCCTGACCCACCCTTTTCAACTGACCCTCTCAGGGGACACACTGTATTGGACAGATTGGCACACCCGTTCCATTCACGCTTGCAAG---TGGAAAGGAGAGCAGAGAAAGGAAATCCTTGGTGCTCTCTACTTACCAATAGATATTCAAGTGCTAAGCCAAGAGCGACAGCCTCCTtgtgaggggcacaaaccaaagagaatagtactgcaaagagggatcgttgca Alignment from CESAR gCAGAAGGTGGTGGAGGGCAGCCTCACTCACCCTTTTGCCCTGACACTCTCTGGGGACACACTCTACTGGACAGACTGGCAGACCCGCTCCATCCACGCCTGCAACAAGTGGACAGGGGAGCAGAGGAAGGAGATCCTTAGTGCTCTGTACTCACCCATGGACATCCAAGTGCTGAGCCAGGAGCGGCAGCCTCCCt catgatggcctgtccccctgtattagaacctgtgcttttcttactcaaagtCAGAAAGTTGTGGAGGGCAGCCTGACCCACCCTTTTCAACTGACCCTCTCAGGGGACACACTGTATTGGACAGATTGGCACACCCGTTCCATTCACGCTTGC---AAGTGGAAAGGAGAGCAGAGAAAGGAAATCCTTGGTGCTCTCTACTTACCAATAGATATTCAAGTGCTAAGCCAAGAGCGACAGCCTCCTtgtgaggggcacaaaccaaagagaatagtactgcaaagagggatcgttgca Alignment from Spaln_aa2Genome GCAGAAGGTGGTGGAGGGCAGCCTCACTCACCCTTTTGCCCTGACACTCTCTGGGGACACACTCTACTGGACAGACTGGCAGACCCGCTCCATCCACGCCTGCAACAAGTGGACAGGGGAGCAGAGGAAGGAGATCCTTAGTGCTCTGTACTCACCCATGGACATCCAAGTGCTGAGCCAGGAGCGGCAGCCTCCCT catgatggcctgtccccctgtattagaacctgtgcttttcttactcaaagTCAGAAAGTTGTGGAGGGCAGCCTGACCCACCCTTTTCAACTGACCCTCTCAGGGGACACACTGTATTGGACAGATTGGCACACCCGTTCCATTCACGCTTGC---AAGTGGAAAGGAGAGCAGAGAAAGGAAATCCTTGGTGCTCTCTACTTACCAATAGATATTCAAGTGCTAAGCCAAGAGCGACAGCCTCCTTgtgaggggcacaaaccaaagagaatagtactgcaaagagggatcgttgca Alignment from Spaln_nt2Genome GCAGAAGGTGGTGGAGGGCAGCCTCACTCACCCTTTTGCCCTGACACTCTCTGGGGACACACTCTACTGGACAGACTGGCAGACCCGCTCCATCCACGCCTGCAACAAGTGGACAGGGGAGCAGAGGAAGGAGATCCTTAGTGCTCTGTACTCACCCATGGACATCCAAGTGCTGAGCCAGGAGCGGCAGCCTCCCT catgatggcctgtccccctgtattagaacctgtgcttttcttactcaaagTCAGAAAGTTGTGGAGGGCAGCCTGACCCACCCTTTTCAACTGACCCTCTCAGGGGACACACTGTATTGGACAGATTGGCACACCCGTTCCATTCACGCTTG---CAAGTGGAAAGGAGAGCAGAGAAAGGAAATCCTTGGTGCTCTCTACTTACCAATAGATATTCAAGTGCTAAGCCAAGAGCGACAGCCTCCTTgtgaggggcacaaaccaaagagaatagtactgcaaagagggatcgttgca Alignment from Pairagon GCAGAAGGTGGTGGAGGGCAGCCTCACTCACCCTTTTGCCCTGACACTCTCTGGGGACACACTCTACTGGACAGACTGGCAGACCCGCTCCATCCACGCCTGCAACAAGTGGACAGGGGAGCAGAGGAAGGAGATCCTTAGTGCTCTGTACTCACCCATGGACATCCAAGTGCTGAGCCAGGAGCGGCAGCCTCCCT catgatggcctgtccccctgtattagaacctgtgcttttcttactcaaagTCAGAAAGTTGTGGAGGGCAGCCTGACCCACCCTTTTCAACTGACCCTCTCAGGGGACACACTGTATTGGACAGATTGGCACACCCGTTCCATTCACGCTTG---CAAGTGGAAAGGAGAGCAGAGAAAGGAAATCCTTGGTGCTCTCTACTTACCAATAGATATTCAAGTGCTAAGCCAAGAGCGACAGCCTCCTTgtgaggggcacaaaccaaagagaatagtactgcaaagagggatcgttgca Alignment from Exonerate_protein2genome GCAGAAGGTGGTGGAGGGCAGCCTCACTCACCCTTTTGCCCTGACACTCTCTGGGGACACACTCTACTGGACAGACTGGCAGACCCGCTCCATCCACGCCTGCAACAAGTGGACAGGGGAGCAGAGGAAGGAGATCCTTAGTGCTCTGTACTCACCCATGGACATCCAAGTGCTGAGCCAGGAGCGGCAGCCTCCCT catgatggcctgtccccctgtattagaacctgtgcttttcttactcaaagTCAGAAAGTTGTGGAGGGCAGCCTGACCCACCCTTTTCAACTGACCCTCTCAGGGGACACACTGTATTGGACAGATTGGCACACCCGTTCCATTCACGCTTGC---AAGTGGAAAGGAGAGCAGAGAAAGGAAATCCTTGGTGCTCTCTACTTACCAATAGATATTCAAGTGCTAAGCCAAGAGCGACAGCCTCCTTgtgaggggcacaaaccaaagagaatagtactgcaaagagggatcgttgca Alignment from Exonerate_coding2genome GCAGAAGGTGGTGGAGGGCAGCCTCACTCACCCTTTTGCCCTGACACTCTCTGGGGACACACTCTACTGGACAGACTGGCAGACCCGCTCCATCCACGCCTGCAACAAGTGGACAGGGGAGCAGAGGAAGGAGATCCTTAGTGCTCTGTACTCACCCATGGACATCCAAGTGCTGAGCCAGGAGCGGCAGCCTCCCT catgatggcctgtccccctgtattagaacctgtgcttttcttactcaaagTCAGAAAGTTGTGGAGGGCAGCCTGACCCACCCTTTTCAACTGACCCTCTCAGGGGACACACTGTATTGGACAGATTGGCACACCCGTTCCATTCACGCTTGC---AAGTGGAAAGGAGAGCAGAGAAAGGAAATCCTTGGTGCTCTCTACTTACCAATAGATATTCAAGTGCTAAGCCAAGAGCGACAGCCTCCTTgtgaggggcacaaaccaaagagaatagtactgcaaagagggatcgttgca Alignment from GeneWise GCAGAAGGTGGTGGAGGGCAGCCTCACTCACCCTTTTGCCCTGACACTCTCTGGGGACACACTCTACTGGACAGACTGGCAGACCCGCTCCATCCACGCCTGCAACAAGTGGACAGGGGAGCAGAGGAAGGAGATCCTTAGTGCTCTGTACTCACCCATGGACATCCAAGTGCTGAGCCAGGAGCGGCAGCCTCCCT catgatggcctgtccccctgtattagaacctgtgcttttcttactcaaagTCAGAAAGTTGTGGAGGGCAGCCTGACCCACCCTTTTCAACTGACCCTCTCAGGGGACACACTGTATTGGACAGATTGGCACACCCGTTCCATTCACGCTTGC---AAGTGGAAAGGAGAGCAGAGAAAGGAAATCCTTGGTGCTCTCTACTTACCAATAGATATTCAAGTGCTAAGCCAAGAGCGACAGCCTCCTTgtgaggggcacaaaccaaagagaatagtactgcaaagagggatcgttgca #### Ltbp3_ID1255_7 --> 2 - 1 Original Alignment ccGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAg c agcacagtaagattgcctctccacactgttaaagacacaattttctgcagctGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCATCCTTTAACTACACGTTTGACCCATCAGCTCTGCTGTTGTAGTGTTGGTAAGGCTTGGGGGGCCCGGTGCCAGCGTTCTCCAGCAGATGGCATGggtatctttgtagagtcttgggattgcattcctccttctttacctcctagc Alignment from CESAR ccGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAg c agcacagtaagattgcctctccacactgttaaagacacaattttctgcagctGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCATCCTTTAACTACACGTTTGACCCATCAGCTCTGCTGTTGTAGTGTTGGTAAGGCTTGGGGGGCCCGGTGCCAGCGTTCTCCAGCAGATGGCATGggtatctttgtagagtcttgggattgcatccctacaatctcctgttgcagc Alignment from Spaln_aa2Genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG C agcacagtaagattgcctctccacactgttaaagacacaattttctgcagCTGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCATCCTTTAACTACACGTTTGACCCATCAGCTCTGCTGTTGTAGTGTTGGTAAGGCTTGGGGGGCCCGGTGCCAGCGTTCTCCAGCAGATGGCATGGgtatctttgtagagtcttgggattgcattcctccttctttacctcctagC Alignment from Spaln_nt2Genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG C agcacagtaagattgcctctccacactgttaaagacacaattttctgcagCTGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCATCCTTTAACTACACGTTTGACCCATCAGCTCTGCTGTTGTAGTGTTGGTAAGGCTTGGGGGGCCCGGTGCCAGCGTTCTCCAGCAGATGGCATGGgtatctttgtagagtcttgggattgcattcctccttctttacctcctagC Alignment from Pairagon CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTA-------------------------------------------------CAGC agcacagtaagattgcctctccacactgttaaagacacaattttctgcagCTGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCATCCTTTAACTACACGTTTGACCCATCAGCTCTGCTGTTGTAGTGTTGGTAAGGCTTGGGGGGCCCGGTGCCAGCGTTCTCCAGCAGATGGCATGGGTATCTTTGTAGAGTCTTGGGATTGCATTCCTCCTTCTTTACCTCCTAGC Alignment from Exonerate_protein2genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG C agcacagtaagattgcctctccacactgttaaagacacaattttctgcagCTGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCATCCTTTAACTACACGTTTGACCCATCAGCTCTGCTGTTGTAGTGTTGGTAAGGCTTGGGGGGCCCGGTGCCAGCGTTCTCCAGCAGATGGCATGGgtatctttgtagagtcttgggattgcattcctccttctttacctcctagC Alignment from Exonerate_coding2genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG C agcacagtaagattgcctctccacactgttaaagacacaattttctgcagCTGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCATCCTTTAACTACACGTTTGACCCATCAGCTCTGCTGTTGTAGTGTTGGTAAGGCTTGGGGGGCCCGGTGCCAGCGTTCTCCAGCAGATGGCATGGgtatctttgtagagtcttgggattgcattcctccttctttacctcctagC Alignment from GeneWise CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG C agcacagtaagattgcctctccacactgttaaagacacaattttctgcagCTGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCATCCTTTAACTACACGTTTGACCCATCAGCTCTGCTGTTGTAGTGTTGGTAAGGCTTGGGGGGCCCGGTGCCAGCGTTCTCCAGCAGATGGCATGGgtatctttgtagagtcttgggattgcattcctccttctttacctcctagC #### Ltbp3_ID1259_11 --> 2 - 1 Original Alignment agCTCATCTCTCGCCCCTCCCCACCTACCTTCCACCGGTTCCTGCCAGACTTGCCCCCATCCCGAAGTGCAGTGGAGATCGCCCCCACTCAGGTCACAg tttaacctgttttggtacttcattctctgactgctatacttctcatttaggaCTTGTATCTTGTCCTATCCCGCCCTCTTTCCATAGGTCACTGCCAGACCTAGCCCAACCTAGAAGA------GAAATTGCACTAACTCAGGTTATCggtatggtctctagccagggctacattcgtgatattctgtacagccatttt Alignment from CESAR agCTCATCTCTCGCCCCTCCCCACCTACCTTCCACCGGTTCCTGCCAGACTTGCCCCCATCCCGAAGTGCAGTGGAGATCGCCCCCACTCAGGTCACAg tttaacctgttttggtacttcattctctgactgctatacttctcatttaggaCTTGTATCTTGTCCTATCCCGCCCTCTTTCCATAGGTCACTGCCAGACCTAGCCCAACCTAGAAGA------GAAATTGCACTAACTCAGGTTATCggtatggtctctagccagggctacattcgtgatattctgtacagccatttt Alignment from Spaln_aa2Genome AGCTCATCTCTCGCCCCTCCCCACCTACCTTCCACCGGTTCCTGCCAGACTTGCCCCCATCCCGAAGTGCAGTGGAGATCGCCCCCACTCAGGTCACAG tttaacctgttttggtacttcattctctgactgctatacttctcatttagGACTTGTATCTTGTCCTATCCCGCCCTCTTTCCATAGGTCACTGCCAGACCTAGCCCAACCTAGAAGA------GAAATTGCACTAACTCAGGTTATCGgtatggtctctagccagggctacattcgtgatattctgtacagccatttt Alignment from Spaln_nt2Genome AGCTCATCTCTCGCCCCTCCCCACCTACCTTCCACCGGTTCCTGCCAGACTTGCCCCCATCCCGAAGTGCAGTGGAGATCGCCCCCACTCAGGTCACAG tttaacctgttttggtacttcattctctgactgctatacttctcatttagGACTTGTATCTTGTCCTATCCCGCCCTCTTTCCATAGGTCACTGCCAGACCTAGCCCAACCTAGAAG------AGAAATTGCACTAACTCAGGTTATCGgtatggtctctagccagggctacattcgtgatattctgtacagccatttt Alignment from Pairagon tttaacctgttttggtacttcattctctgactgctatacttctcatttaggacttgtatcttgtcctatcccgccctctttccataggtcactgccagacctagcccaacctagaagagaaattgcactaactcaggttatcggtatggtctctagccagggctacattcgtgatattctgtacagccatttt Alignment from Exonerate_protein2genome AGCTCATCTCTCGCCCCTCCCCACCTACCTTCCACCGGTTCCTGCCAGACTTGCCCCCATCCCGAAGTGCAGTGGAGATCGCCCCCACTCAGGTCACAG tttaacctgttttggtacttcattctctgactgctatacttctcatttagGACTTGTATCTTGTCCTATCCCGCCCTCTTTCCATAGGTCACTGCCAGACCTAGCCCAACCTAGAAGA------GAAATTGCACTAACTCAGGTTATCGgtatggtctctagccagggctacattcgtgatattctgtacagccatttt Alignment from Exonerate_coding2genome tttaacctgttttggtacttcattctctgactgctatacttctcatttaggacttgtatcttgtcctatcccgccctctttccataggtcactgccagacctagcccaacctagaagagaaattgcactaactcaggttatcggtatggtctctagccagggctacattcgtgatattctgtacagccatttt Alignment from GeneWise AGCTCATCTCTCGCCCCTCCCCACCTACCTTCCACCGGTTCCTGCCAGACTTGCCCCCATCCCGAAGTGCAGTGGAGATCGCCCCCACTCAGGTCACAG tttaacctgttttggtacttcattctctgactgctatacttctcatttagGACTTGTATCTTGTCCTATCCCGCCCTCTTTCCATAGGTCACTGCCAGACCTAGCCCAACCTAGAAGA------GAAATTGCACTAACTCAGGTTATCGgtatggtctctagccagggctacattcgtgatattctgtacagccatttt #### Ltbp3_ID1264_16 --> 2 - 1 Original Alignment atGTCAACGAATGCTCCGAGGGTACCCCCTGCTCTCCTGGATGGTGTGAGAACCTTCCGGGTTCTTACCGTTGCACGTGTGCCCAGGGATACGAACCCGCACAGGACGGCCTCAGTTGCATAg cctgatggatagatatgagaggtgactatatcttctgttctgtatttcagacAGCAATGAATGTCCTGAGGGTACCCCTTGCTGTCCTGAATGGTGTGAAAACCTTCCAGGGTCCTACTGTTGCACATCTGCCCATGGATATGAACCTGCACAGGATTGTCTTAGCTGCATAggtgcagcagtgcagaggtcatccatacgcctgcccagggatttgaagagg Alignment from CESAR atGTCAACGAATGCTCCGAGGGTACCCCCTGCTCTCCTGGATGGTGTGAGAACCTTCCGGGTTCTTACCGTTGCACGTGTGCCCAGGGATACGAACCCGCACAGGACGGCCTCAGTTGCATAg cctgatggatagatatgagaggtgactatatcttctgttctgtatttcagacAGCAATGAATGTCCTGAGGGTACCCCTTGCTGTCCTGAATGGTGTGAAAACCTTCCAGGGTCCTACTGTTGCACATCTGCCCATGGATATGAACCTGCACAGGATTGTCTTAGCTGCATAggtgcagcagtgcagaggtcatccatacgcctgcccagggatttgaagagg Alignment from Spaln_aa2Genome ATGTCAACGAATGCTCCGAGGGTACCCCCTGCTCTCCTGGATGGTGTGAGAACCTTCCGGGTTCTTACCGTTGCACGTGTGCCCAGGGATACGAACCCGCACAGGACGGCCTCAGTTGCATAG cctgatggatagatatgagaggtgactatatcttctgttctgtatttcagACAGCAATGAATGTCCTGAGGGTACCCCTTGCTGTCCTGAATGGTGTGAAAACCTTCCAGGGTCCTACTGTTGCACATCTGCCCATGGATATGAACCTGCACAGGATTGTCTTAGCTGCATAGgtgcagcagtgcagaggtcatccatacgcctgcccagggatttgaagagg Alignment from Spaln_nt2Genome ATGTCAACGAATGCTCCGAGGGTACCCCCTGCTCTCCTGGATGGTGTGAGAACCTTCCGGGTTCTTACCGTTGCACGTGTGCCCAGGGATACGAACCCGCACAGGACGGCCTCAGTTGCATAG cctgatggatagatatgagaggtgactatatcttctgttctgtatttcagACAGCAATGAATGTCCTGAGGGTACCCCTTGCTGTCCTGAATGGTGTGAAAACCTTCCAGGGTCCTACTGTTGCACATCTGCCCATGGATATGAACCTGCACAGGATTGTCTTAGCTGCATAGgtgcagcagtgcagaggtcatccatacgcctgcccagggatttgaagagg Alignment from Pairagon ATGTCAACGAATGCTCCGAGGGTACCCCCTGCTCTCCTGGATGGTGTGAGAACCTTCCGGGTTCTTACCGTTGCACGTGTGCCCAGGGATACGAACCCGCACAGGACGGCCTCAGTTGCATAG cctgatggatagatatgagaggtgactatatcttctgttctgtatttcagACAGCAATGAATGTCCTGAGGGTACCCCTTGCTGTCCTGAATGGTGTGAAAACCTTCCAGGGTCCTACTGTTGCACATCTGCCCATGGATATGAACCTGCACAGGATTGTCTTAGCTGCATAGgtgcagcagtgcagaggtcatccatacgcctgcccagggatttgaagagg Alignment from Exonerate_protein2genome ATGTCAACGAATGCTCCGAGGGTACCCCCTGCTCTCCTGGATGGTGTGAGAACCTTCCGGGTTCTTACCGTTGCACGTGTGCCCAGGGATACGAACCCGCACAGGACGGCCTCAGTTGCATAG cctgatggatagatatgagaggtgactatatcttctgttctgtatttcagACAGCAATGAATGTCCTGAGGGTACCCCTTGCTGTCCTGAATGGTGTGAAAACCTTCCAGGGTCCTACTGTTGCACATCTGCCCATGGATATGAACCTGCACAGGATTGTCTTAGCTGCATAGgtgcagcagtgcagaggtcatccatacgcctgcccagggatttgaagagg Alignment from Exonerate_coding2genome cctgatggatagatatgagaggtgactatatcttctgttctgtatttcagacagcaatgaatgtcctgagggtaccccttgctgtcctgaatggtgtgaaaaccttccagggtcctactgttgcacatctgcccatggatatgaacctgcacaggattgtcttagctgcataggtgcagcagtgcagaggtcatccatacgcctgcccagggatttgaagagg Alignment from GeneWise CAACGAATGCTCCGAGGGTACCCCCTGCTCTCCTGGATGGTGTGAGAACCTTCCGGGTTCTTACCGTTGCACGTGTGCCCAGGGATACGAACCCGCACAGGACGGCCTCAGTTGCATAG cctgatggatagatatgagaggtgactatatcttctgttctgtatttcagacagCAATGAATGTCCTGAGGGTACCCCTTGCTGTCCTGAATGGTGTGAAAACCTTCCAGGGTCCTACTGTTGCACATCTGCCCATGGATATGAACCTGCACAGGATTGTCTTAGCTGCATAGgtgcagcagtgcagaggtcatccatacgcctgcccagggatttgaagagg #### Lzts2_ID9277_3 --> 0 - 0 Original Alignment GCATTCGGGGCACGGCAGCGGCGCTGGCCACGGGAGCGAGGGGAGGACTGTGCAGCCCAGGCGCAGCAGGCCACGCAGCGCGTCCAGCGGGCCCAACAGCTGCTGCAGCTGCAGGTGTTCCAGCTGCAGCAAGAGAAGCGCCAGTTGCAGGATGACTTTGCCCAGCTGCTACAGGAGCGGGAACAGCTGGAGCGCCGCTGTGCCACTTTTGAACGGGAGCAGCGGGAACTCGGGCCACGGCTGGAGGAGACCAAATGGGAG agtaacagcagagtggagtgcattgttaatttctaccttgcttttcccagGCATTTGGAGCCCAGCAG------CAGTCAAGAGAACAAGGTGAGGTTTGTGCACCACAGGCTGACAAAGCAACACAGCATGTGTCACAGGCTCAACAGTTGCTGCAGCTCCAGGTGTTCCAGCTGCAACAAGAGAAA---CAGCTGCAAGAGCACTATGCTCAGTTGCTCCAGGAACGCGAACAACTGGAGCGTCACTGCGCCACCTTTGAACGGGAGCAACAAGAACTGGGGCCGCAGCTGGAAGAAACTAAATGGGAAgtgagtatcagggaaaatagttagggtcatatcctggatgcagatctggt Alignment from CESAR GCATTCGGGGCACGGCAGCGGCGCTGGCCACGGGAGCGAGGGGAGGACTGTGCAGCCCAGGCGCAGCAGGCCACGCAGCGCGTCCAGCGGGCCCAACAGCTGCTGCAGCTGCAGGTGTTCCAGCTGCAGCAAGAGAAGCGCCAGTTGCAGGATGACTTTGCCCAGCTGCTACAGGAGCGGGAACAGCTGGAGCGCCGCTGTGCCACTTTTGAACGGGAGCAGCGGGAACTCGGGCCACGGCTGGAGGAGACCAAATGGGAG agtaacagcagagtggagtgcattgttaatttctaccttgcttttcccagGCATTTGGAGCCCAGCAGCAG------TCAAGAGAACAAGGTGAGGTTTGTGCACCACAGGCTGACAAAGCAACACAGCATGTGTCACAGGCTCAACAGTTGCTGCAGCTCCAGGTGTTCCAGCTGCAACAAGAGAAA---CAGCTGCAAGAGCACTATGCTCAGTTGCTCCAGGAACGCGAACAACTGGAGCGTCACTGCGCCACCTTTGAACGGGAGCAACAAGAACTGGGGCCGCAGCTGGAAGAAACTAAATGGGAAgtgagtatcagggaaaatagttagggtcatatcctggatgcagatctggt Alignment from Spaln_aa2Genome GCATTCGGGGCACGGCAGCGGCGCTGGCCACGGGAGCGAGGGGAGGACTGTGCAGCCCAGGCGCAGCAGGCCACGCAGCGCGTCCAGCGGGCCCAACAGCTGCTGCAGCTGCAGGTGTTCCAGCTGCAGCAAGAGAAGCGCCAGTTGCAGGATGACTTTGCCCAGCTGCTACAGGAGCGGGAACAGCTGGAGCGCCGCTGTGCCACTTTTGAACGGGAGCAGCGGGAACTCGGGCCACGGCTGGAGGAGACCAAATGGGAG agtaacagcagagtggagtgcattgttaatttctaccttgcttttcccagGCATTTGGAGCCCAGCAGCAG------TCAAGAGAACAAGGTGAGGTTTGTGCACCACAGGCTGACAAAGCAACACAGCATGTGTCACAGGCTCAACAGTTGCTGCAGCTCCAGGTGTTCCAGCTGCAACAAGAGAAA---CAGCTGCAAGAGCACTATGCTCAGTTGCTCCAGGAACGCGAACAACTGGAGCGTCACTGCGCCACCTTTGAACGGGAGCAACAAGAACTGGGGCCGCAGCTGGAAGAAACTAAATGGGAAgtgagtatcagggaaaatagttagggtcatatcctggatgcagatctggt Alignment from Spaln_nt2Genome GCATTCGGGGCACGGCAGCGGCGCTGGCCACGGGAGCGAGGGGAGGACTGTGCAGCCCAGGCGCAGCAGGCCACGCAGCGCGTCCAGCGGGCCCAACAGCTGCTGCAGCTGCAGGTGTTCCAGCTGCAGCAAGAGAAGCGCCAGTTGCAGGATGACTTTGCCCAGCTGCTACAGGAGCGGGAACAGCTGGAGCGCCGCTGTGCCACTTTTGAACGGGAGCAGCGGGAACTCGGGCCACGGCTGGAGGAGACCAAATGGGAG agtaacagcagagtggagtgcattgttaatttctaccttgcttttcccagGCATTTGGAGCCCAGCAGC------AGTCAAGAGAACAAGGTGAGGTTTGTGCACCACAGGCTGACAAAGCAACACAGCATGTGTCACAGGCTCAACAGTTGCTGCAGCTCCAGGTGTTCCAGCTGCAACAAGAGAAA---CAGCTGCAAGAGCACTATGCTCAGTTGCTCCAGGAACGCGAACAACTGGAGCGTCACTGCGCCACCTTTGAACGGGAGCAACAAGAACTGGGGCCGCAGCTGGAAGAAACTAAATGGGAAgtgagtatcagggaaaatagttagggtcatatcctggatgcagatctggt Alignment from Pairagon GCATTCGGGGCACGGCAGCGGCGCTGGCCACGGGAGCGAGGGGAGGACTGTGCAGCCCAGGCGCAGCAGGCCACGCAGCGCGTCCAGCGGGCCCAACAGCTGCTGCAGCTGCAGGTGTTCCAGCTGCAGCAAGAGAAGCGCCAGTTGCAGGATGACTTTGCCCAGCTGCTACAGGAGCGGGAACAGCTGGAGCGCCGCTGTGCCACTTTTGAACGGGAGCAGCGGGAACTCGGGCCACGGCTGGAGGAGACCAAATGGGAG agtaacagcagagtggagtgcattgttaatttctaccttgcttttcccagGCATTTGGAGCCCAGCAGC------AGTCAAGAGAACAAGGTGAGGTTTGTGCACCACAGGCTGACAAAGCAACACAGCATGTGTCACAGGCTCAACAGTTGCTGCAGCTCCAGGTGTTCCAGCTGCAACAAGAGAAA---CAGCTGCAAGAGCACTATGCTCAGTTGCTCCAGGAACGCGAACAACTGGAGCGTCACTGCGCCACCTTTGAACGGGAGCAACAAGAACTGGGGCCGCAGCTGGAAGAAACTAAATGGGAAgtgagtatcagggaaaatagttagggtcatatcctggatgcagatctggt Alignment from Exonerate_protein2genome GCATTCGGGGCACGGCAGCGGCGCTGGCCACGGGAGCGAGGGGAGGACTGTGCAGCCCAGGCGCAGCAGGCCACGCAGCGCGTCCAGCGGGCCCAACAGCTGCTGCAGCTGCAGGTGTTCCAGCTGCAGCAAGAGAAGCGCCAGTTGCAGGATGACTTTGCCCAGCTGCTACAGGAGCGGGAACAGCTGGAGCGCCGCTGTGCCACTTTTGAACGGGAGCAGCGGGAACTCGGGCCACGGCTGGAGGAGACCAAATGGGAG agtaacagcagagtggagtgcattgttaatttctaccttgcttttcccagGCATTTGGAGCCCAGCAGCAG------TCAAGAGAACAAGGTGAGGTTTGTGCACCACAGGCTGACAAAGCAACACAGCATGTGTCACAGGCTCAACAGTTGCTGCAGCTCCAGGTGTTCCAGCTGCAACAAGAGAAA---CAGCTGCAAGAGCACTATGCTCAGTTGCTCCAGGAACGCGAACAACTGGAGCGTCACTGCGCCACCTTTGAACGGGAGCAACAAGAACTGGGGCCGCAGCTGGAAGAAACTAAATGGGAAgtgagtatcagggaaaatagttagggtcatatcctggatgcagatctggt Alignment from Exonerate_coding2genome GCATTCGGGGCACGGCAGCGGCGCTGGCCACGGGAGCGAGGGGAGGACTGTGCAGCCCAGGCGCAGCAGGCCACGCAGCGCGTCCAGCGGGCCCAACAGCTGCTGCAGCTGCAGGTGTTCCAGCTGCAGCAAGAGAAGCGCCAGTTGCAGGATGACTTTGCCCAGCTGCTACAGGAGCGGGAACAGCTGGAGCGCCGCTGTGCCACTTTTGAACGGGAGCAGCGGGAACTCGGGCCACGGCTGGAGGAGACCAAATGGGAG agtaacagcagagtggagtgcattgttaatttctaccttgcttttcccagGCATTTGGAGCCCAGCAGCAG------TCAAGAGAACAAGGTGAGGTTTGTGCACCACAGGCTGACAAAGCAACACAGCATGTGTCACAGGCTCAACAGTTGCTGCAGCTCCAGGTGTTCCAGCTGCAACAAGAGAAA---CAGCTGCAAGAGCACTATGCTCAGTTGCTCCAGGAACGCGAACAACTGGAGCGTCACTGCGCCACCTTTGAACGGGAGCAACAAGAACTGGGGCCGCAGCTGGAAGAAACTAAATGGGAAgtgagtatcagggaaaatagttagggtcatatcctggatgcagatctggt Alignment from GeneWise GCATTCGGGGCACGGCAGCGGCGCTGGCCACGGGAGCGAGGGGAGGACTGTGCAGCCCAGGCGCAGCAGGCCACGCAGCGCGTCCAGCGGGCCCAACAGCTGCTGCAGCTGCAGGTGTTCCAGCTGCAGCAAGAGAAGCGCCAGTTGCAGGATGACTTTGCCCAGCTGCTACAGGAGCGGGAACAGCTGGAGCGCCGCTGTGCCACTTTTGAACGGGAGCAGCGGGAACTCGGGCCACGGCTGGAGGAGACCAAATGGGAG agtaacagcagagtggagtgcattgttaatttctaccttgcttttcccagGCATTTGGAGCCCAGCAGCAGTCA------AGAGAACAAGGTGAGGTTTGTGCACCACAGGCTGACAAAGCAACACAGCATGTGTCACAGGCTCAACAGTTGCTGCAGCTCCAGGTGTTCCAGCTGCAACAAGAGAAA---CAGCTGCAAGAGCACTATGCTCAGTTGCTCCAGGAACGCGAACAACTGGAGCGTCACTGCGCCACCTTTGAACGGGAGCAACAAGAACTGGGGCCGCAGCTGGAAGAAACTAAATGGGAAgtgagtatcagggaaaatagttagggtcatatcctggatgcagatctggt #### Macrod1_ID2006_2 --> 2 - 1 Original Alignment ccTTTCTGAAGGGCCTGAGTGACAAGCAGAGAGAGGAACATTACTTCTGCAAGGATTTCATTAAGCTGAAGAAGATCCCCACGTGGAAGGAGACAGCAAAAg cctctctggagagtggaataggtacaaagttgttaacttattttccttagccTTTTTGAAAGGCCTGAGTGAAAAGCAGAGGGAAGAGCATTACTCCTGCAAGGATTTCATAAAGCTAAAAAAGATACCCACATGGAAGGAGACAGCCAAGggtgagtgcctggtcgatcttcctccatcattctatttcaagcctatgtgt Alignment from CESAR ccTTTCTGAAGGGCCTGAGTGACAAGCAGAGAGAGGAACATTACTTCTGCAAGGATTTCATTAAGCTGAAGAAGATCCCCACGTGGAAGGAGACAGCAAAAg cctctctggagagtggaataggtacaaagttgttaacttattttccttagccTTTTTGAAAGGCCTGAGTGAAAAGCAGAGGGAAGAGCATTACTCCTGCAAGGATTTCATAAAGCTAAAAAAGATACCCACATGGAAGGAGACAGCCAAGggtgagtgcctggtcgatcttcctccatcattctatttcaagcctatgtgt Alignment from Spaln_aa2Genome CCTTTCTGAAGGGCCTGAGTGACAAGCAGAGAGAGGAACATTACTTCTGCAAGGATTTCATTAAGCTGAAGAAGATCCCCACGTGGAAGGAGACAGCAAAAG cctctctggagagtggaataggtacaaagttgttaacttattttccttagCCTTTTTGAAAGGCCTGAGTGAAAAGCAGAGGGAAGAGCATTACTCCTGCAAGGATTTCATAAAGCTAAAAAAGATACCCACATGGAAGGAGACAGCCAAGGgtgagtgcctggtcgatcttcctccatcattctatttcaagcctatgtgt Alignment from Spaln_nt2Genome CCTTTCTGAAGGGCCTGAGTGACAAGCAGAGAGAGGAACATTACTTCTGCAAGGATTTCATTAAGCTGAAGAAGATCCCCACGTGGAAGGAGACAGCAAAAG cctctctggagagtggaataggtacaaagttgttaacttattttccttagCCTTTTTGAAAGGCCTGAGTGAAAAGCAGAGGGAAGAGCATTACTCCTGCAAGGATTTCATAAAGCTAAAAAAGATACCCACATGGAAGGAGACAGCCAAGGgtgagtgcctggtcgatcttcctccatcattctatttcaagcctatgtgt Alignment from Pairagon CCTTTCTGAAGGGCCTGAGTGACAAGCAGAGAGAGGAACATTACTTCTGCAAGGATTTCATTAAGCTGAAGAAGATCCCCACGTGGAAGGAGACAGCAAAAG cctctctggagagtggaataggtacaaagttgttaacttattttccttagCCTTTTTGAAAGGCCTGAGTGAAAAGCAGAGGGAAGAGCATTACTCCTGCAAGGATTTCATAAAGCTAAAAAAGATACCCACATGGAAGGAGACAGCCAAGGgtgagtgcctggtcgatcttcctccatcattctatttcaagcctatgtgt Alignment from Exonerate_protein2genome CCTTTCTGAAGGGCCTGAGTGACAAGCAGAGAGAGGAACATTACTTCTGCAAGGATTTCATTAAGCTGAAGAAGATCCCCACGTGGAAGGAGACAGCAAAAG cctctctggagagtggaataggtacaaagttgttaacttattttccttagCCTTTTTGAAAGGCCTGAGTGAAAAGCAGAGGGAAGAGCATTACTCCTGCAAGGATTTCATAAAGCTAAAAAAGATACCCACATGGAAGGAGACAGCCAAGGgtgagtgcctggtcgatcttcctccatcattctatttcaagcctatgtgt Alignment from Exonerate_coding2genome TCCTTTCTGAAGGGCCTGAGTGACAAGCAGAGAGAGGAACATTACTTCTGCAAGGATTTCATTAAGCTGAAGAAGATCCCCACGTGGAAGGAGACAGCAAAAG cctctctggagagtggaataggtacaaagttgttaacttattttccttaGCCTTTTTGAAAGGCCTGAGTGAAAAGCAGAGGGAAGAGCATTACTCCTGCAAGGATTTCATAAAGCTAAAAAAGATACCCACATGGAAGGAGACAGCCAAGGgtgagtgcctggtcgatcttcctccatcattctatttcaagcctatgtgt Alignment from GeneWise CCTTTCTGAAGGGCCTGAGTGACAAGCAGAGAGAGGAACATTACTTCTGCAAGGATTTCATTAAGCTGAAGAAGATCCCCACGTGGAAGGAGACAGCAAAAGGG-- cctctctggagagtggaataggtacaaagttgttaacttattttccttagCCTTTTTGAAAGGCCTGAGTGAAAAGCAGAGGGAAGAGCATTACTCCTGCAAGGATTTCATAAAGCTAAAAAAGATACCCACATGGAAGGAGACAGCCAAGGGTGAgtgcctggtcgatcttcctccatcattctatttcaagcctatgtgt #### Macrod1_ID2051_6 --> 2 - 0 Original Alignment atGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGC---CTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG gagtagaagacatcattggtacacccccccccccctcgtctgcctctcagatGTCATT------GTGGGGCTCATTGCAGTAGGG------------AGTGAGGCGGCTGAATTCCACAGTTGTTATCTGAGCAGTCCGTTAGACCTACTGCTAGAACACAGATTGTGTCCAGTTgtaagatggtggactcaagggcaaaagctggcattacactagtagaaaca Alignment from CESAR atGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGC---CTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG gagtagaagacatcattggtacacccccccccccctcgtctgcctctcagatGTCATT------GTGGGGCTCATTGCAGTAGGG------------AGTGAGGCGGCTGAATTCCACAGTTGTTATCTGAGCAGTCCGTTAGACCTACTGCTAGAACACAGATTGTGTCCAGTTgtaagatggtggactcaagggcaaaagctggcattacactagtagaaaca Alignment from Spaln_aa2Genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGC---CTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG gagtagaagacatcattggtacacccccccccccctcgtctgcctctcagATGTCATT------GTGGGGCTCATTGCAGTAGGG------------AGTGAGGCGGCTGAATTCCACAGTTGTTATCTGAGCAGTCCGTTAGACCTACTGCTAGAACACAGATTGTGTCCAGTTgtaagatggtggactcaagggcaaaagctggcattacactagtagaaaca Alignment from Spaln_nt2Genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTG---GACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG gagtagaagacatcattggtacacccccccccccctcgtctgcctctcagATGTCAT------TGTGGGGCTCATTGCAGTAGG------------GAGTGAGGCGGCTGAATTCCACAGTTGTTATCTGAGCAGTCCGTTAGACCTACTGCTAGAACACAGATTGTGTCCAGTTgtaagatggtggactcaagggcaaaagctggcattacactagtagaaaca Alignment from Pairagon ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTG---GACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG gagtagaagacatcattggtacacccccccccccctcgtctgcctctcagATGTCATT------GTGGGGCTCATTGCAGTAGG------------GAGTGAGGCGGCTGAATTCCACAGTTGTTATCTGAGCAGTCCGTTAGACCTACTGCTAGAACACAGATTGTGTCCAGTTgtaagatggtggactcaagggcaaaagctggcattacactagtagaaaca Alignment from Exonerate_protein2genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGC---CTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG gagtagaagacatcattggtacacccccccccccctcgtctgcctctcagATGTCATT------GTGGGGCTCATTGCAGTAGGG------------AGTGAGGCGGCTGAATTCCACAGTTGTTATCTGAGCAGTCCGTTAGACCTACTGCTAGAACACAGATTGTGTCCAGTTgtaagatggtggactcaagggcaaaagctggcattacactagtagaaaca Alignment from Exonerate_coding2genome gagtagaagacatcattggtacacccccccccccctcgtctgcctctcagatgtcattgtggggctcattgcagtagggagtgaggcggctgaattccacagttgttatctgagcagtccgttagacctactgctagaacacagattgtgtccagttgtaagatggtggactcaagggcaaaagctggcattacactagtagaaaca Alignment from GeneWise ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGC---CTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG gagtagaagacatcattggtacacccccccccccctcgtctgcctctcagATGTCATT------GTGGGGCTCATTGCAGTAGGG------------AGTGAGGCGGCTGAATTCCACAGTTGTTATCTGAGCAGTCCGTTAGACCTACTGCTAGAACACAGATTGTGTCCAGTTgtaagatggtggactcaagggcaaaagctggcattacactagtagaaaca #### Macrod1_ID2052_7 --> 0 - 1 Original Alignment GCTTTCCCGTGCATCTCCACAGGCGTGTTTg aaataaagaaaaactatacgtgtctctgaaacccaatttgatttccttagACCTTTCCATGCATCTCCACAGGGGTGATTagtaagttgagggggccttggaacatggaataaaggaagactgagtagaat Alignment from CESAR GCTTTCCCGTGCATCTCCACAGGCGTGTTTg aaataaagaaaaactatacgtgtctctgaaacccaatttgatttccttagACCTTTCCATGCATCTCCACAGGGGTGATTagtaagttgagggggccttggaacatggaataaaggaagactgagtagaat Alignment from Spaln_aa2Genome GCTTTCCCGTGCATCTCCACAGGCGTGTTTG aaataaagaaaaactatacgtgtctctgaaacccaatttgatttccttagACCTTTCCATGCATCTCCACAGGGGTGATTAgtaagttgagggggccttggaacatggaataaaggaagactgagtagaat Alignment from Spaln_nt2Genome GCTTTCCCGTGCATCTCCACAGGCGTGTTTG aaataaagaaaaactatacgtgtctctgaaacccaatttgatttccttagACCTTTCCATGCATCTCCACAGGGGTGATTAgtaagttgagggggccttggaacatggaataaaggaagactgagtagaat Alignment from Pairagon GCTTTCCCGTGCATCTCCACAGGCGTGTTTG aaataaagaaaaactatacgtgtctctgaaacccaatttgatttccttagACCTTTCCATGCATCTCCACAGGGGTGATTAgtaagttgagggggccttggaacatggaataaaggaagactgagtagaat Alignment from Exonerate_protein2genome GCTTTCCCGTGCATCTCCACAGGCGTGTTTG aaataaagaaaaactatacgtgtctctgaaacccaatttgatttccttagACCTTTCCATGCATCTCCACAGGGGTGATTAgtaagttgagggggccttggaacatggaataaaggaagactgagtagaat Alignment from Exonerate_coding2genome aaataaagaaaaactatacgtgtctctgaaacccaatttgatttccttagacctttccatgcatctccacaggggtgattagtaagttgagggggccttggaacatggaataaaggaagactgagtagaat Alignment from GeneWise --- aaataaagaaaaactatacgtgtctctgaaacccaatttgatttccttagacctttccatgcatctccacaggggtgattagtaagttgagggggccttggaacatggaataaaggaagactgagtagAAT #### Map4k2_ID1623_3 --> 2 - 2 Original Alignment ggGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCag tcaggaaaagatcaatgcactcttatggacagtgttgtttctgctctcagggGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTCCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCACTAGCTACCTCaggtaaggctactcagatctacatacccaggtgcctcactcttagttgctca Alignment from CESAR ggGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCag tcaggaaaagatcaatgcactcttatggacagtgttgtttctgctctcagggGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTCCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCACTAGCTACCTCaggtaaggctactcagatctacatacccaggtgcctcactcttagttgctca Alignment from Spaln_aa2Genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG tcaggaaaagatcaatgcactcttatggacagtgttgtttctgctctcagGGGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTCCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCACTAGCTACCTCAGgtaaggctactcagatctacatacccaggtgcctcactcttagttgctca Alignment from Spaln_nt2Genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG tcaggaaaagatcaatgcactcttatggacagtgttgtttctgctctcagGGGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTCCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCACTAGCTACCTCAGgtaaggctactcagatctacatacccaggtgcctcactcttagttgctca Alignment from Pairagon GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG tcaggaaaagatcaatgcactcttatggacagtgttgtttctgctctcagGGGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTCCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCACTAGCTACCTCAGgtaaggctactcagatctacatacccaggtgcctcactcttagttgctca Alignment from Exonerate_protein2genome tcaggaaaagatcaatgcactcttatggacagtgttgtttctgctctcaggggatgacatcagctctcttcagcaggaaatcaccatcctccgtgaatgccgccaccccaatgttgtggcctacatcactagctacctcaggtaaggctactcagatctacatacccaggtgcctcactcttagttgctca Alignment from Exonerate_coding2genome tcaggaaaagatcaatgcactcttatggacagtgttgtttctgctctcaggggatgacatcagctctcttcagcaggaaatcaccatcctccgtgaatgccgccaccccaatgttgtggcctacatcactagctacctcaggtaaggctactcagatctacatacccaggtgcctcactcttagttgctca Alignment from GeneWise GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG tcaggaaaagatcaatgcactcttatggacagtgttgtttctgctctcagGGGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTCCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCACTAGCTACCTCAGgtaaggctactcagatctacatacccaggtgcctcactcttagttgctca #### Map4k2_ID1628_7 --> 0 - 1 Original Alignment TAAG------ GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGg TAAGGTAGGAgtgcagatctaggtggtttctttgcttccatcgttcccagGGTGCAAACCTCCTGCTCACATTGCAGGGAGAGGTGCAATTGtgtaagtgttgtgtggacttcagagtcaatcaatggcacaagctggggctc Alignment from CESAR TAAG GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGg TAAGgtaggagtagaaatctaggtggtttctttgcttccatcgttcccagGGTGCAAACCTCCTGCTCACATTGCAGGGAGAGGTGCAATTGtgtaagtgttgtgtggacttcagagtcaatcaatggcacaagctggggctc Alignment from Spaln_aa2Genome TAAG GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG TAAGgtaggagtgcagatctaggtggtttctttgcttccatcgttcccagGGTGCAAACCTCCTGCTCACATTGCAGGGAGAGGTGCAATTGTgtaagtgttgtgtggacttcagagtcaatcaatggcacaagctggggctc Alignment from Spaln_nt2Genome TAAG GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG TAAGgtaggagtgcagatctaggtggtttctttgcttccatcgttcccagGGTGCAAACCTCCTGCTCACATTGCAGGGAGAGGTGCAATTGTgtaagtgttgtgtggacttcagagtcaatcaatggcacaagctggggctc Alignment from Pairagon TAAG GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG TAAGgtaggagtgcagatctaggtggtttctttgcttccatcgttcccagGGTGCAAACCTCCTGCTCACATTGCAGGGAGAGGTGCAATTGTgtaagtgttgtgtggacttcagagtcaatcaatggcacaagctggggctc Alignment from Exonerate_protein2genome AAGGGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG taaggtaggagtgcagatctaggtggtttctttgcttccatcgttccCAGGGTGCAAACCTCCTGCTCACATTGCAGGGAGAGGTGCAATTGTgtaagtgttgtgtggacttcagagtcaatcaatggcacaagctggggctc Alignment from Exonerate_coding2genome taaggtaggagtgcagatctaggtggtttctttgcttccatcgttcccagggtgcaaacctcctgctcacattgcagggagaggtgcaattgtgtaagtgttgtgtggacttcagagtcaatcaatggcacaagctggggctc Alignment from GeneWise TAAG GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG TAAGgtaggagtgcagatctaggtggtttctttgcttccatcgttcccagGGTGCAAACCTCCTGCTCACATTGCAGGGAGAGGTGCAATTGTgtaagtgttgtgtggacttcagagtcaatcaatggcacaagctggggctc #### Map4k2_ID1635_14 --> 2 - 0 Original Alignment ttCACCAAGTGAAATTCGGT------------------GCTCCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCG aatgagatgaggtaactgcaacgggaccatcaatggtgttcactacttagttCACCAAGTGGAACTCACAGCTCCACACCAGAAGGAGACTCCCCAACAGGAAGAGACAGAC------AATGATGCAgtaggctaaatgtacaggggggaaggctaagggcgactcctacgtcagaa Alignment from CESAR ttCACCAAGTGAAATTCGGTGCTCCTCGCCGGAAGGAGACA------------GATCCTCTCAATGAACCG aatgagatgaggtaactgcaacgggaccatcaatggtgttcactacttagttCACCAAGTGGAACTCACAGCTCCACACCAGAAGGAGACTCCCCAACAGGAAGAGACAGACAATGATGCAgtaggctaaatgtacaggggggaaggctaagggcgactcctacgtcagaa Alignment from Spaln_aa2Genome TTCACCAAGTGAAATTCGGTGCTCCTCGCCGGAAGGAGACA------------GATCCTCTCAATGAACCG aatgagatgaggtaactgcaacgggaccatcaatggtgttcactacttagTTCACCAAGTGGAACTCACAGCTCCACACCAGAAGGAGACTCCCCAACAGGAAGAGACAGACAATGATGCAgtaggctaaatgtacaggggggaaggctaagggcgactcctacgtcagaa Alignment from Spaln_nt2Genome TTCACCAAGTGAAATTCGGTGCTCCTCGCCGGAAGGAGAC------------AGATCCTCTCAATGAACCG aatgagatgaggtaactgcaacgggaccatcaatggtgttcactacttagTTCACCAAGTGGAACTCACAGCTCCACACCAGAAGGAGACTCCCCAACAGGAAGAGACAGACAATGATGCAgtaggctaaatgtacaggggggaaggctaagggcgactcctacgtcagaa Alignment from Pairagon TTCACCAAGTGAAATTCGGTGCTCCTCGCCGGAAG------------------GAGACAGATCCTCTCAATGAACCG aatgagatgaggtaactgcaacgggaccatcaatggtgttcactacttagTTCACCAAGTGGAACTCACAGCTCCACACCAGAAGGAGACTCCCCAACAGGAAGAGACAGA------CAATGATGCAgtaggctaaatgtacaggggggaaggctaagggcgactcctacgtcagaa Alignment from Exonerate_protein2genome aatgagatgaggtaactgcaacgggaccatcaatggtgttcactacttagttcaccaagtggaactcacagctccacaccagaaggagactccccaacaggaagagacagacaatgatgcagtaggctaaatgtacaggggggaaggctaagggcgactcctacgtcagaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TTCACCAAGTGAAATTCGGTGCTCCTCGCCGGAAGGAGACA------------GATCCTCTCAATGAACCG aatgagatgaggtaactgcaacgggaccatcaatggtgttcactacttagTTCACCAAGTGGAACTCACAGCTCCACACCAGAAGGAGACTCCCCAACAGGAAGAGACAGACAATGATGCAgtaggctaaatgtacaggggggaaggctaagggcgactcctacgtcagaa #### Map4k2_ID1645_24 --> 2 - 2 Original Alignment ggAAATCCACACATATCTGGGCGCATGAC------CTCCCGGGCCTGTTTGAGCAGCGAAGGCTGCAGCACCAGGCACCCCTCTCCATCCCTACCAACCGCATCACTCAGCGCATCATCCCCag acacgttcccaagagtcttctgagctataactgaatgctgggctttgcagggAGGTTCACGCACATCTGGGCACATGACTTACCTCTGCCAGGTTTGTTTGAGCAGTGTAGACTACAGCATCAGGCACCTCTGTCAATCCCTACCAACTGCATCACCCAGCACATTATACCGaggtaagtagttctctttgcacatactacataaatatgatagtactgcgact Alignment from CESAR ggAAATCCACACATATCTGGGCGCATGAC------CTCCCGGGCCTGTTTGAGCAGCGAAGGCTGCAGCACCAGGCACCCCTCTCCATCCCTACCAACCGCATCACTCAGCGCATCATCCCCag acacgttcccaagagtcttctgagctataactgaatgctgggctttgcagggAGGTTCACGCACATCTGGGCACATGACTTACCTCTGCCAGGTTTGTTTGAGCAGTGTAGACTACAGCATCAGGCACCTCTGTCAATCCCTACCAACTGCATCACCCAGCACATTATACCGaggtaagtagttctctttgcacatactacataaatatgatagtactgcgact Alignment from Spaln_aa2Genome GGAAATCCACACATATCTGGGCGCATGAC------CTCCCGGGCCTGTTTGAGCAGCGAAGGCTGCAGCACCAGGCACCCCTCTCCATCCCTACCAACCGCATCACTCAGCGCATCATCCCCAG acacgttcccaagagtcttctgagctataactgaatgctgggctttgcagGGAGGTTCACGCACATCTGGGCACATGACTTACCTCTGCCAGGTTTGTTTGAGCAGTGTAGACTACAGCATCAGGCACCTCTGTCAATCCCTACCAACTGCATCACCCAGCACATTATACCGAGgtaagtagttctctttgcacatactacataaatatgatagtactgcgact Alignment from Spaln_nt2Genome GGAAATCCACACATATCTGGGCGCATGAC------CTCCCGGGCCTGTTTGAGCAGCGAAGGCTGCAGCACCAGGCACCCCTCTCCATCCCTACCAACCGCATCACTCAGCGCATCATCCCCAG acacgttcccaagagtcttctgagctataactgaatgctgggctttgcagGGAGGTTCACGCACATCTGGGCACATGACTTACCTCTGCCAGGTTTGTTTGAGCAGTGTAGACTACAGCATCAGGCACCTCTGTCAATCCCTACCAACTGCATCACCCAGCACATTATACCGAGgtaagtagttctctttgcacatactacataaatatgatagtactgcgact Alignment from Pairagon GGAAATCCACACATATCTGGGCGCATGAC------CTCCCGGGCCTGTTTGAGCAGCGAAGGCTGCAGCACCAGGCACCCCTCTCCATCCCTACCAACCGCATCACTCAGCGCATCATCCCCAG acacgttcccaagagtcttctgagctataactgaatgctgggctttgcagGGAGGTTCACGCACATCTGGGCACATGACTTACCTCTGCCAGGTTTGTTTGAGCAGTGTAGACTACAGCATCAGGCACCTCTGTCAATCCCTACCAACTGCATCACCCAGCACATTATACCGAGgtaagtagttctctttgcacatactacataaatatgatagtactgcgact Alignment from Exonerate_protein2genome GGAAATCCACACATATCTGGGCGCATGAC------CTCCCGGGCCTGTTTGAGCAGCGAAGGCTGCAGCACCAGGCACCCCTCTCCATCCCTACCAACCGCATCACTCAGCGCATCATCCCCAG acacgttcccaagagtcttctgagctataactgaatgctgggctttgcagGGAGGTTCACGCACATCTGGGCACATGACTTACCTCTGCCAGGTTTGTTTGAGCAGTGTAGACTACAGCATCAGGCACCTCTGTCAATCCCTACCAACTGCATCACCCAGCACATTATACCGAGgtaagtagttctctttgcacatactacataaatatgatagtactgcgact Alignment from Exonerate_coding2genome GGAAATCCACACATATCTGGGCGCATGAC------CTCCCGGGCCTGTTTGAGCAGCGAAGGCTGCAGCACCAGGCACCCCTCTCCATCCCTACCAACCGCATCACTCAGCGCATCATCCCCAG acacgttcccaagagtcttctgagctataactgaatgctgggctttgcagGGAGGTTCACGCACATCTGGGCACATGACTTACCTCTGCCAGGTTTGTTTGAGCAGTGTAGACTACAGCATCAGGCACCTCTGTCAATCCCTACCAACTGCATCACCCAGCACATTATACCGAGgtaagtagttctctttgcacatactacataaatatgatagtactgcgact Alignment from GeneWise GGAAATCCACACATATCTGGGCGCATGACCTC------CCGGGCCTGTTTGAGCAGCGAAGGCTGCAGCACCAGGCACCCCTCTCCATCCCTACCAACCGCATCACTCAGCGCATCATCCCCAG acacgttcccaagagtcttctgagctataactgaatgctgggctttgcagGGAGGTTCACGCACATCTGGGCACATGACTTACCTCTGCCAGGTTTGTTTGAGCAGTGTAGACTACAGCATCAGGCACCTCTGTCAATCCCTACCAACTGCATCACCCAGCACATTATACCGAGgtaagtagttctctttgcacatactacataaatatgatagtactgcgact #### Map4k2_ID1649_28 --> 2 - 1 Original Alignment agGGGATCCCAGGTTCTGCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAc aatgtgagctcaataatcagtcagagatagtgtgtctgctctccctgcagagGGGATTCCAGGGCCTGCACAACAGGTGATACAGGTAGATCGAGACAAAGTCTTGGTTAGCTTTGAAcgtaagaaagtgagtgtcaaacggagattgcaaacaggttgggagcaaagc Alignment from CESAR agGGGATCCCAGGTTCTGCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAc aatgtgagctcaataatcagtcagagatagtgtgtctgctctccctgcagagGGGATTCCAGGGCCTGCACAACAGGTGATACAGGTAGATCGAGACAAAGTCTTGGTTAGCTTTGAAcgtaagaaagtgagtgtcaaacggagattgcaaacaggttgggagcaaagc Alignment from Spaln_aa2Genome AGGGGATCCCAGGTTCTGCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAC aatgtgagctcaataatcagtcagagatagtgtgtctgctctccctgcagAGGGGATTCCAGGGCCTGCACAACAGGTGATACAGGTAGATCGAGACAAAGTCTTGGTTAGCTTTGAACgtaagaaagtgagtgtcaaacggagattgcaaacaggttgggagcaaagc Alignment from Spaln_nt2Genome AGGGGATCCCAGGTTCTGCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAC aatgtgagctcaataatcagtcagagatagtgtgtctgctctccctgcagAGGGGATTCCAGGGCCTGCACAACAGGTGATACAGGTAGATCGAGACAAAGTCTTGGTTAGCTTTGAACgtaagaaagtgagtgtcaaacggagattgcaaacaggttgggagcaaagc Alignment from Pairagon AGGGGATCCCAGGTTCTGCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAC aatgtgagctcaataatcagtcagagatagtgtgtctgctctccctgcagAGGGGATTCCAGGGCCTGCACAACAGGTGATACAGGTAGATCGAGACAAAGTCTTGGTTAGCTTTGAACgtaagaaagtgagtgtcaaacggagattgcaaacaggttgggagcaaagc Alignment from Exonerate_protein2genome AGGGGATCCCAGGTTCTGCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAC aatgtgagctcaataatcagtcagagatagtgtgtctgctctccctgcagAGGGGATTCCAGGGCCTGCACAACAGGTGATACAGGTAGATCGAGACAAAGTCTTGGTTAGCTTTGAACgtaagaaagtgagtgtcaaacggagattgcaaacaggttgggagcaaagc Alignment from Exonerate_coding2genome aatgtgagctcaataatcagtcagagatagtgtgtctgctctccctgcagaggggattccagggcctgcacaacaggtgatacaggtagatcgagacaaagtcttggttagctttgaacgtaagaaagtgagtgtcaaacggagattgcaaacaggttgggagcaaagc Alignment from GeneWise AGGGGATCCCAGGTTCTGCACAGCAGGTGATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAC aatgtgagctcaataatcagtcagagatagtgtgtctgctctccctgcagAGGGGATTCCAGGGCCTGCACAACAGGTGATACAGGTAGATCGAGACAAAGTCTTGGTTAGCTTTGAACgtaagaaagtgagtgtcaaacggagattgcaaacaggttgggagcaaagc #### March5_ID7302_4 --> 0 - 1 Original Alignment GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAg gcatctatgaaggtgtgaaagggactttctcttgaactctttttctgtagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGAGCCTTTATTTCTTCTGACTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAggtgagccattggtatggtattgcattcaaggcatacatagctaggattaa Alignment from CESAR GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAg gcatctatgaaggtgtgaaagggactttctcttgaactctttttctgtagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGAGCCTTTATTTCTTCTGACTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAggtgagccattggtatggtattgcattcaaggcatacatagctaggattaa Alignment from Spaln_aa2Genome GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG gcatctatgaaggtgtgaaagggactttctcttgaactctttttctgtagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGAGCCTTTATTTCTTCTGACTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtgagccattggtatggtattgcattcaaggcatacatagctaggattaa Alignment from Spaln_nt2Genome GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG gcatctatgaaggtgtgaaagggactttctcttgaactctttttctgtagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGAGCCTTTATTTCTTCTGACTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtgagccattggtatggtattgcattcaaggcatacatagctaggattaa Alignment from Pairagon GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG gcatctatgaaggtgtgaaagggactttctcttgaactctttttctgtagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGAGCCTTTATTTCTTCTGACTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtgagccattggtatggtattgcattcaaggcatacatagctaggattaa Alignment from Exonerate_protein2genome GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG gcatctatgaaggtgtgaaagggactttctcttgaactctttttctgtagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGAGCCTTTATTTCTTCTGACTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtgagccattggtatggtattgcattcaaggcatacatagctaggattaa Alignment from Exonerate_coding2genome GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG gcatctatgaaggtgtgaaagggactttctcttgaactctttttctgtagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGAGCCTTTATTTCTTCTGACTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtgagccattggtatggtattgcattcaaggcatacatagctaggattaa Alignment from GeneWise GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG gcatctatgaaggtgtgaaagggactttctcttgaactctttttctgtagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGAGCCTTTATTTCTTCTGACTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtgagccattggtatggtattgcattcaaggcatacatagctaggattaa #### Mark2_ID2107_14 --> 0 - 2 Original Alignment AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACag gactaagtgcactactttagaggcaatacacttgcctcccctgggctcagAACGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCAGTCTTGGCCAGGCTTCCATTCAGAATGGAAAAGACaggtactgtaattaagtctggttccttttccaaagaagaatgcagtgcttta Alignment from CESAR AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACag gactaagtgcactactttagaggcaatacacttgcctcccctgggctcagAACGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCAGTCTTGGCCAGGCTTCCATTCAGAATGGAAAAGACaggtactgtaattaagtctggttccttttccaaagaagaatgcagtgcttta Alignment from Spaln_aa2Genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG gactaagtgcactactttagaggcaatacacttgcctcccctgggctcagAACGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCAGTCTTGGCCAGGCTTCCATTCAGAATGGAAAAGACAGgtactgtaattaagtctggttccttttccaaagaagaatgcagtgcttta Alignment from Spaln_nt2Genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG gactaagtgcactactttagaggcaatacacttgcctcccctgggctcagAACGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCAGTCTTGGCCAGGCTTCCATTCAGAATGGAAAAGACAGgtactgtaattaagtctggttccttttccaaagaagaatgcagtgcttta Alignment from Pairagon AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG gactaagtgcactactttagaggcaatacacttgcctcccctgggctcagAACGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCAGTCTTGGCCAGGCTTCCATTCAGAATGGAAAAGACAGgtactgtaattaagtctggttccttttccaaagaagaatgcagtgcttta Alignment from Exonerate_protein2genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG gactaagtgcactactttagaggcaatacacttgcctcccctgggctcagAACGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCAGTCTTGGCCAGGCTTCCATTCAGAATGGAAAAGACAGgtactgtaattaagtctggttccttttccaaagaagaatgcagtgcttta Alignment from Exonerate_coding2genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG gactaagtgcactactttagaggcaatacacttgcctcccctgggctcagAACGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCAGTCTTGGCCAGGCTTCCATTCAGAATGGAAAAGACAGgtactgtaattaagtctggttccttttccaaagaagaatgcagtgcttta Alignment from GeneWise AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG gactaagtgcactactttagaggcaatacacttgcctcccctgggctcagAACGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCAGTCTTGGCCAGGCTTCCATTCAGAATGGAAAAGACAGgtactgtaattaagtctggttccttttccaaagaagaatgcagtgcttta #### Mark2_ID2108_13 --> 2 - 0 Original Alignment ccGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG gtgacatagagtatggtgccttgggggatagctccttctccacctcgcagctGTACCCGGCATTCCCACCTCCAATTCCTATTCTAAAAAGACTCAGAGTAACAATGCAGAAAACAAGCGCCCTGAGGAGGAAACAGGACGAAGAGCCAGCAGCACTGCCAAGGTGCCCACCAGCCCATTGCCAGGCCTGGATAGGAAGAAGACTACT---GCACCATCTACAgtgtgccctacagttactctccaagagactaagtgcactactttagaggc Alignment from CESAR ccGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG gtgacatagagtatggtgccttgggggatagctccttctccacctcgcagctGTACCCGGCATTCCCACCTCCAATTCCTATTCTAAAAAGACTCAGAGTAACAATGCAGAAAACAAGCGCCCTGAGGAGGAAACAGGACGAAGAGCCAGCAGCACTGCCAAGGTGCCCACCAGCCCATTGCCAGGCCTGGATAGGAAGAAGACTACT---GCACCATCTACAgtgtgccctacagttactctccaagagactaagtgcactactttagaggc Alignment from Spaln_aa2Genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG gtgacatagagtatggtgccttgggggatagctccttctccacctcgcagCTGTACCCGGCATTCCCACCTCCAATTCCTATTCTAAAAAGACTCAGAGTAACAATGCAGAAAACAAGCGCCCTGAGGAGGAAACAGGACGAAGAGCCAGCAGCACTGCCAAGGTGCCCACCAGCCCATTGCCAGGCCTGGATAGGAAGAAGACTACT---GCACCATCTACAgtgtgccctacagttactctccaagagactaagtgcactactttagaggc Alignment from Spaln_nt2Genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG gtgacatagagtatggtgccttgggggatagctccttctccacctcgcagCTGTACCCGGCATTCCCACCTCCAATTCCTATTCTAAAAAGACTCAGAGTAACAATGCAGAAAACAAGCGCCCTGAGGAGGAAACAGGACGAAGAGCCAGCAGCACTGCCAAGGTGCCCACCAGCCCATTGCCAGGCCTGGATAGGAAGAAG---ACTACTGCACCATCTACAgtgtgccctacagttactctccaagagactaagtgcactactttagaggc Alignment from Pairagon CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG gtgacatagagtatggtgccttgggggatagctccttctccacctcgcagCTGTACCCGGCATTCCCACCTCCAATTCCTATTCTAAAAAGACTCAGAGTAACAATGCAGAAAACAAGCGCCCTGAGGAGGAAACAGGACGAAGAGCCAGCAGCACTGCCAAGGTGCCCACCAGCCCATTGCCAGGCCTGGATAGGAAGAAGACTA---CTGCACCATCTACAgtgtgccctacagttactctccaagagactaagtgcactactttagaggc Alignment from Exonerate_protein2genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG gtgacatagagtatggtgccttgggggatagctccttctccacctcgcagCTGTACCCGGCATTCCCACCTCCAATTCCTATTCTAAAAAGACTCAGAGTAACAATGCAGAAAACAAGCGCCCTGAGGAGGAAACAGGACGAAGAGCCAGCAGCACTGCCAAGGTGCCCACCAGCCCATTGCCAGGCCTGGATAGGAAGAAGACTACT---GCACCATCTACAgtgtgccctacagttactctccaagagactaagtgcactactttagaggc Alignment from Exonerate_coding2genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG gtgacatagagtatggtgccttgggggatagctccttctccacctcgcagCTGTACCCGGCATTCCCACCTCCAATTCCTATTCTAAAAAGACTCAGAGTAACAATGCAGAAAACAAGCGCCCTGAGGAGGAAACAGGACGAAGAGCCAGCAGCACTGCCAAGGTGCCCACCAGCCCATTGCCAGGCCTGGATAGGAAGAAGACTACT---GCACCATCTACAgtgtgccctacagttactctccaagagactaagtgcactactttagaggc Alignment from GeneWise CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG gtgacatagagtatggtgccttgggggatagctccttctccacctcgcagCTGTACCCGGCATTCCCACCTCCAATTCCTATTCTAAAAAGACTCAGAGTAACAATGCAGAAAACAAGCGCCCTGAGGAGGAAACAGGACGAAGAGCCAGCAGCACTGCCAAGGTGCCCACCAGCCCATTGCCAGGCCTGGATAGGAAGAAGACTACT---GCACCATCTACAgtgtgccctacagttactctccaagagactaagtgcactactttagaggc #### Mark2_ID2111_10 --> 0 - 1 Original Alignment CAAATTATG---------------AAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAg tttgaaaatagttacattttgctccctggatattgtgtgtatttctccagCAAATCATGGAGGATCAGTGGATGAAAGATCAGTGGATGAACGTGGGGCATGAGGATGTCGAACTAAAGATTTATGTGCAACCCTTTCCTGACTATAGGGAACCACGGCAAACAggtgcggctgtgtggtgctgcatgtctgagataaggccacattgtgtcaat Alignment from CESAR CAAATT---------------ATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAg tttgaaaatagttacattttgctccctggatattgtgtgtatttctccagCAAATCATGGAGGATCAGTGGATGAAAGATCAGTGGATGAACGTGGGGCATGAGGATGTCGAACTAAAGATTTATGTGCAACCCTTTCCTGACTATAGGGAACCACGGCAAACAggtgcggctgtgtggtgctgcatgtctgagataaggccacattgtgtcaat Alignment from Spaln_aa2Genome CAAATT---------------ATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG tttgaaaatagttacattttgctccctggatattgtgtgtatttctccagCAAATCATGGAGGATCAGTGGATGAAAGATCAGTGGATGAACGTGGGGCATGAGGATGTCGAACTAAAGATTTATGTGCAACCCTTTCCTGACTATAGGGAACCACGGCAAACAGgtgcggctgtgtggtgctgcatgtctgagataaggccacattgtgtcaat Alignment from Spaln_nt2Genome TT-ATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG tttgaaaatagttacattttgctccctggatattgtgtgtatttctccagcaaatcatggaggatcagTGGATGAAAGATCAGTGGATGAACGTGGGGCATGAGGATGTCGAACTAAAGATTTATGTGCAACCCTTTCCTGACTATAGGGAACCACGGCAAACAGgtgcggctgtgtggtgctgcatgtctgagataaggccacattgtgtcaat Alignment from Pairagon CAAATT---------------ATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG tttgaaaatagttacattttgctccctggatattgtgtgtatttctccagCAAATCATGGAGGATCAGTGGATGAAAGATCAGTGGATGAACGTGGGGCATGAGGATGTCGAACTAAAGATTTATGTGCAACCCTTTCCTGACTATAGGGAACCACGGCAAACAGgtgcggctgtgtggtgctgcatgtctgagataaggccacattgtgtcaat Alignment from Exonerate_protein2genome CAAATTATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG tttgaaaatagttacattttgctccctggatattgtgtgtatttctccagcaaatcatggaggatCAGTGGATGAAAGATCAGTGGATGAACGTGGGGCATGAGGATGTCGAACTAAAGATTTATGTGCAACCCTTTCCTGACTATAGGGAACCACGGCAAACAGgtgcggctgtgtggtgctgcatgtctgagataaggccacattgtgtcaat Alignment from Exonerate_coding2genome CAAATTATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG tttgaaaatagttacattttgctccctggatattgtgtgtatttctccagcaaatcatggaggatCAGTGGATGAAAGATCAGTGGATGAACGTGGGGCATGAGGATGTCGAACTAAAGATTTATGTGCAACCCTTTCCTGACTATAGGGAACCACGGCAAACAGgtgcggctgtgtggtgctgcatgtctgagataaggccacattgtgtcaat Alignment from GeneWise ---CAAATTATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG tttgaaaatagttacattttgctccctggatattgtgtgtatttctccagcaaatcatggagGATCAGTGGATGAAAGATCAGTGGATGAACGTGGGGCATGAGGATGTCGAACTAAAGATTTATGTGCAACCCTTTCCTGACTATAGGGAACCACGGCAAACAGgtgcggctgtgtggtgctgcatgtctgagataaggccacattgtgtcaat #### Mark2_ID2113_8 --> 0 - 0 Original Alignment GCAGAAAACCTGCTCCTGGATGCTGATATGAACATCAAGATTGCAGACTTTGGCTTTAGCAACGAATTCACCTTTGGGAACAAGCTGGATACTTTCTGTGGCAGTCCTCCTTATGCTGCCCCAGAACTTTTCCAGGGCAAAAAGTATGATGGTCCTGAGGTGGATGTCTGGAGCCTGGGAGTCATCCTCTATACACTGGTCAGCGGATCCCTGCCTTTTGATGGACAGAACCTCAAG gagcctgtatacattgtcactatccatcatgaaatatttatcttttttagTCAGAGAAGCTGCTTTTGGATGCCGACATGAACATTAAGATTGCAGACTTTGGATTTAGCAACAAGTTCACTTTTGGGAATGTACTGGACACTTTTTGTGGCAGTCCTCCTTATGCTGCTCCAGAGTATTTCCAGGCTAAAAAGTATGATGGCCATGAAGTAGATGTTCGGAGCCTTGGAGTCATTCTTTATACACTA------GGATCTCTGCCCTTTGATGGACGAAATTTAATGgtatggaaactgagcatggacagctttttgctttgagcccttctcggacc Alignment from CESAR GCAGAAAACCTGCTCCTGGATGCTGATATGAACATCAAGATTGCAGACTTTGGCTTTAGCAACGAATTCACCTTTGGGAACAAGCTGGATACTTTCTGTGGCAGTCCTCCTTATGCTGCCCCAGAACTTTTCCAGGGCAAAAAGTATGATGGTCCTGAGGTGGATGTCTGGAGCCTGGGAGTCATCCTCTATACACTGGTCAGCGGATCCCTGCCTTTTGATGGACAGAACCTCAAG gagcctgtatacattgtcactatccatcatgaaatatttatcttttttagTCAGAGAAGCTGCTTTTGGATGCCGACATGAACATTAAGATTGCAGACTTTGGATTTAGCAACAAGTTCACTTTTGGGAATGTACTGGACACTTTTTGTGGCAGTCCTCCTTATGCTGCTCCAGAGTATTTCCAGGCTAAAAAGTATGATGGCCATGAAGTAGATGTTCGGAGCCTTGGAGTCATTCTTTATACACTA------GGATCTCTGCCCTTTGATGGACGAAATTTAATGgtatggaaactgagcatggacagctttttgctttgagcccttctcggacc Alignment from Spaln_aa2Genome GCAGAAAACCTGCTCCTGGATGCTGATATGAACATCAAGATTGCAGACTTTGGCTTTAGCAACGAATTCACCTTTGGGAACAAGCTGGATACTTTCTGTGGCAGTCCTCCTTATGCTGCCCCAGAACTTTTCCAGGGCAAAAAGTATGATGGTCCTGAGGTGGATGTCTGGAGCCTGGGAGTCATCCTCTATACACTGGTCAGCGGATCCCTGCCTTTTGATGGACAGAACCTCAAG gagcctgtatacattgtcactatccatcatgaaatatttatcttttttagTCAGAGAAGCTGCTTTTGGATGCCGACATGAACATTAAGATTGCAGACTTTGGATTTAGCAACAAGTTCACTTTTGGGAATGTACTGGACACTTTTTGTGGCAGTCCTCCTTATGCTGCTCCAGAGTATTTCCAGGCTAAAAAGTATGATGGCCATGAAGTAGATGTTCGGAGCCTTGGAGTCATTCTTTATACACTA------GGATCTCTGCCCTTTGATGGACGAAATTTAATGgtatggaaactgagcatggacagctttttgctttgagcccttctcggacc Alignment from Spaln_nt2Genome GCAGAAAACCTGCTCCTGGATGCTGATATGAACATCAAGATTGCAGACTTTGGCTTTAGCAACGAATTCACCTTTGGGAACAAGCTGGATACTTTCTGTGGCAGTCCTCCTTATGCTGCCCCAGAACTTTTCCAGGGCAAAAAGTATGATGGTCCTGAGGTGGATGTCTGGAGCCTGGGAGTCATCCTCTATACACTGGTCAGCGGATCCCTGCCTTTTGATGGACAGAACCTCAAG gagcctgtatacattgtcactatccatcatgaaatatttatcttttttagTCAGAGAAGCTGCTTTTGGATGCCGACATGAACATTAAGATTGCAGACTTTGGATTTAGCAACAAGTTCACTTTTGGGAATGTACTGGACACTTTTTGTGGCAGTCCTCCTTATGCTGCTCCAGAGTATTTCCAGGCTAAAAAGTATGATGGCCATGAAGTAGATGTTCGGAGCCTTGGAGTCATTCTTTATACACT------AGGATCTCTGCCCTTTGATGGACGAAATTTAATGgtatggaaactgagcatggacagctttttgctttgagcccttctcggacc Alignment from Pairagon GCAGAAAACCTGCTCCTGGATGCTGATATGAACATCAAGATTGCAGACTTTGGCTTTAGCAACGAATTCACCTTTGGGAACAAGCTGGATACTTTCTGTGGCAGTCCTCCTTATGCTGCCCCAGAACTTTTCCAGGGCAAAAAGTATGATGGTCCTGAGGTGGATGTCTGGAGCCTGGGAGTCATCCTCTATACACTGGTCAGCGGATCCCTGCCTTTTGATGGACAGAACCTCAAG gagcctgtatacattgtcactatccatcatgaaatatttatcttttttagTCAGAGAAGCTGCTTTTGGATGCCGACATGAACATTAAGATTGCAGACTTTGGATTTAGCAACAAGTTCACTTTTGGGAATGTACTGGACACTTTTTGTGGCAGTCCTCCTTATGCTGCTCCAGAGTATTTCCAGGCTAAAAAGTATGATGGCCATGAAGTAGATGTTCGGAGCCTTGGAGTCATTCTTTATACACTA------GGATCTCTGCCCTTTGATGGACGAAATTTAATGgtatggaaactgagcatggacagctttttgctttgagcccttctcggacc Alignment from Exonerate_protein2genome GCAGAAAACCTGCTCCTGGATGCTGATATGAACATCAAGATTGCAGACTTTGGCTTTAGCAACGAATTCACCTTTGGGAACAAGCTGGATACTTTCTGTGGCAGTCCTCCTTATGCTGCCCCAGAACTTTTCCAGGGCAAAAAGTATGATGGTCCTGAGGTGGATGTCTGGAGCCTGGGAGTCATCCTCTATACACTGGTCAGCGGATCCCTGCCTTTTGATGGACAGAACCTCAAG gagcctgtatacattgtcactatccatcatgaaatatttatcttttttagTCAGAGAAGCTGCTTTTGGATGCCGACATGAACATTAAGATTGCAGACTTTGGATTTAGCAACAAGTTCACTTTTGGGAATGTACTGGACACTTTTTGTGGCAGTCCTCCTTATGCTGCTCCAGAGTATTTCCAGGCTAAAAAGTATGATGGCCATGAAGTAGATGTTCGGAGCCTTGGAGTCATTCTTTATACACTA------GGATCTCTGCCCTTTGATGGACGAAATTTAATGgtatggaaactgagcatggacagctttttgctttgagcccttctcggacc Alignment from Exonerate_coding2genome GCAGAAAACCTGCTCCTGGATGCTGATATGAACATCAAGATTGCAGACTTTGGCTTTAGCAACGAATTCACCTTTGGGAACAAGCTGGATACTTTCTGTGGCAGTCCTCCTTATGCTGCCCCAGAACTTTTCCAGGGCAAAAAGTATGATGGTCCTGAGGTGGATGTCTGGAGCCTGGGAGTCATCCTCTATACACTGGTCAGCGGATCCCTGCCTTTTGATGGACAGAACCTCAAG gagcctgtatacattgtcactatccatcatgaaatatttatcttttttagTCAGAGAAGCTGCTTTTGGATGCCGACATGAACATTAAGATTGCAGACTTTGGATTTAGCAACAAGTTCACTTTTGGGAATGTACTGGACACTTTTTGTGGCAGTCCTCCTTATGCTGCTCCAGAGTATTTCCAGGCTAAAAAGTATGATGGCCATGAAGTAGATGTTCGGAGCCTTGGAGTCATTCTTTATACACTA------GGATCTCTGCCCTTTGATGGACGAAATTTAATGgtatggaaactgagcatggacagctttttgctttgagcccttctcggacc Alignment from GeneWise GCAGAAAACCTGCTCCTGGATGCTGATATGAACATCAAGATTGCAGACTTTGGCTTTAGCAACGAATTCACCTTTGGGAACAAGCTGGATACTTTCTGTGGCAGTCCTCCTTATGCTGCCCCAGAACTTTTCCAGGGCAAAAAGTATGATGGTCCTGAGGTGGATGTCTGGAGCCTGGGAGTCATCCTCTATACACTGGTCAGCGGATCCCTGCCTTTTGATGGACAGAACCTCAAG gagcctgtatacattgtcactatccatcatgaaatatttatcttttttagTCAGAGAAGCTGCTTTTGGATGCCGACATGAACATTAAGATTGCAGACTTTGGATTTAGCAACAAGTTCACTTTTGGGAATGTACTGGACACTTTTTGTGGCAGTCCTCCTTATGCTGCTCCAGAGTATTTCCAGGCTAAAAAGTATGATGGCCATGAAGTAGATGTTCGGAGCCTTGGAGTCATTCTTTATACACTA------GGATCTCTGCCCTTTGATGGACGAAATTTAATGgtatggaaactgagcatggacagctttttgctttgagcccttctcggacc #### Mark2_ID2120_2 --> 0 - 0 Original Alignment CCCACCTTGGGACACCTTGATTCCAAGCCCAGCAGTAAGTCCAACATGCTGCGGGGCCGCAACTCAGCCACCTCTGCTGACGAGCAGCCCCATATTGGCAACTACCGGCTCCTTAAGACCATTGGCAAGGGTAACTTTGCCAAGGTGAAGTTGGCCCGGCACATCCTGACGGGGAAAGAG cttgtctgttacaattctgccttgtccttggcaccctgccatccccacagCCAACATTGGGGCACCTTGATTCAAAACCCAGCAGTAAGTCAAATATGCTTCAGGGCCATAACTCGGCCACATCCGCTGATGAACAGCCTCATATTGGTAACTACCAGCTGCTTAAGACTATTGGAAAGAGCAACTTTGCAAAGGTGAAGTTGGCACGCCATATCTTGACTGGAAAGGAGgtgggtggtaagggcaaataatgaggctagagcgttacagtctcagcacc Alignment from CESAR CCCACCTTGGGACACCTTGATTCCAAGCCCAGCAGTAAGTCCAACATGCTGCGGGGCCGCAACTCAGCCACCTCTGCTGACGAGCAGCCCCATATTGGCAACTACCGGCTCCTTAAGACCATTGGCAAGGGTAACTTTGCCAAGGTGAAGTTGGCCCGGCACATCCTGACGGGGAAAGAG cttgtctgttacaattctgccttgtccttggcaccctgccatccccacagCCAACATTGGGGCACCTTGATTCAAAACCCAGCAGTAAGTCAAATATGCTTCAGGGCCATAACTCGGCCACATCCGCTGATGAACAGCCTCATATTGGTAACTACCAGCTGCTTAAGACTATTGGAAAGAGCAACTTTGCAAAGGTGAAGTTGGCACGCCATATCTTGACTGGAAAGGAGgtgggtggtaagggcaaataatgaggctagagcgttacagtctcagcacc Alignment from Spaln_aa2Genome CCCACCTTGGGACACCTTGATTCCAAGCCCAGCAGTAAGTCCAACATGCTGCGGGGCCGCAACTCAGCCACCTCTGCTGACGAGCAGCCCCATATTGGCAACTACCGGCTCCTTAAGACCATTGGCAAGGGTAACTTTGCCAAGGTGAAGTTGGCCCGGCACATCCTGACGGGGAAAGAG cttgtctgttacaattctgccttgtccttggcaccctgccatccccacagCCAACATTGGGGCACCTTGATTCAAAACCCAGCAGTAAGTCAAATATGCTTCAGGGCCATAACTCGGCCACATCCGCTGATGAACAGCCTCATATTGGTAACTACCAGCTGCTTAAGACTATTGGAAAGAGCAACTTTGCAAAGGTGAAGTTGGCACGCCATATCTTGACTGGAAAGGAGgtgggtggtaagggcaaataatgaggctagagcgttacagtctcagcacc Alignment from Spaln_nt2Genome CCCACCTTGGGACACCTTGATTCCAAGCCCAGCAGTAAGTCCAACATGCTGCGGGGCCGCAACTCAGCCACCTCTGCTGACGAGCAGCCCCATATTGGCAACTACCGGCTCCTTAAGACCATTGGCAAGGGTAACTTTGCCAAGGTGAAGTTGGCCCGGCACATCCTGACGGGGAAAGAG cttgtctgttacaattctgccttgtccttggcaccctgccatccccacagCCAACATTGGGGCACCTTGATTCAAAACCCAGCAGTAAGTCAAATATGCTTCAGGGCCATAACTCGGCCACATCCGCTGATGAACAGCCTCATATTGGTAACTACCAGCTGCTTAAGACTATTGGAAAGAGCAACTTTGCAAAGGTGAAGTTGGCACGCCATATCTTGACTGGAAAGGAGgtgggtggtaagggcaaataatgaggctagagcgttacagtctcagcacc Alignment from Pairagon CCCACCTTGGGACACCTTGATTCCAAGCCCAGCAGTAAGTCCAACATGCTGCGGGGCCGCAACTCAGCCACCTCTGCTGACGAGCAGCCCCATATTGGCAACTACCGGCTCCTTAAGACCATTGGCAAGGGTAACTTTGCCAAGGTGAAGTTGGCCCGGCACATCCTGACGGGGAAAGAG cttgtctgttacaattctgccttgtccttggcaccctgccatccccacagCCAACATTGGGGCACCTTGATTCAAAACCCAGCAGTAAGTCAAATATGCTTCAGGGCCATAACTCGGCCACATCCGCTGATGAACAGCCTCATATTGGTAACTACCAGCTGCTTAAGACTATTGGAAAGAGCAACTTTGCAAAGGTGAAGTTGGCACGCCATATCTTGACTGGAAAGGAGgtgggtggtaagggcaaataatgaggctagagcgttacagtctcagcacc Alignment from Exonerate_protein2genome CCCACCTTGGGACACCTTGATTCCAAGCCCAGCAGTAAGTCCAACATGCTGCGGGGCCGCAACTCAGCCACCTCTGCTGACGAGCAGCCCCATATTGGCAACTACCGGCTCCTTAAGACCATTGGCAAGGGTAACTTTGCCAAGGTGAAGTTGGCCCGGCACATCCTGACGGGGAAAGAG cttgtctgttacaattctgccttgtccttggcaccctgccatccccacagCCAACATTGGGGCACCTTGATTCAAAACCCAGCAGTAAGTCAAATATGCTTCAGGGCCATAACTCGGCCACATCCGCTGATGAACAGCCTCATATTGGTAACTACCAGCTGCTTAAGACTATTGGAAAGAGCAACTTTGCAAAGGTGAAGTTGGCACGCCATATCTTGACTGGAAAGGAGgtgggtggtaagggcaaataatgaggctagagcgttacagtctcagcacc Alignment from Exonerate_coding2genome ACGCTGAACGAAAGGGACACGGAGCAGCCCACCTTGGGACACCTTGATTCCAAGCCCAGCAGTAAGTCCAACATGCTGCGGGGCCGCAACTCAGCCACCTCTGCTGACGAGCAGCCCCATATTGGCAACTACCGGCTCCTTAAGACCATTGGCAAGGGTAACTTTGCCAAGGTGAAGTTGGCCCGGCACATCCTGACGGGGAAAGAG cttgtctgttacaattctgccttGTCCTTGGCACCCTGCCATCCCCACAGCCAACATTGGGGCACCTTGATTCAAAACCCAGCAGTAAGTCAAATATGCTTCAGGGCCATAACTCGGCCACATCCGCTGATGAACAGCCTCATATTGGTAACTACCAGCTGCTTAAGACTATTGGAAAGAGCAACTTTGCAAAGGTGAAGTTGGCACGCCATATCTTGACTGGAAAGGAGgtgggtggtaagggcaaataatgaggctagagcgttacagtctcagcacc Alignment from GeneWise CCCACCTTGGGACACCTTGATTCCAAGCCCAGCAGTAAGTCCAACATGCTGCGGGGCCGCAACTCAGCCACCTCTGCTGACGAGCAGCCCCATATTGGCAACTACCGGCTCCTTAAGACCATTGGCAAGGGTAACTTTGCCAAGGTGAAGTTGGCCCGGCACATCCTGACGGGGAAAGAG cttgtctgttacaattctgccttgtccttggcaccctgccatccccacagCCAACATTGGGGCACCTTGATTCAAAACCCAGCAGTAAGTCAAATATGCTTCAGGGCCATAACTCGGCCACATCCGCTGATGAACAGCCTCATATTGGTAACTACCAGCTGCTTAAGACTATTGGAAAGAGCAACTTTGCAAAGGTGAAGTTGGCACGCCATATCTTGACTGGAAAGGAGgtgggtggtaagggcaaataatgaggctagagcgttacagtctcagcacc #### Mgea5_ID9588_11 --> 2 - 0 Original Alignment ggTGTCGTAGTCACTCTTCAGCACAGTTCTTAATTGGAGACCAGGAGCCCTGGGCCTTTAGAGGTGGTCTAGCAGGAGAGTTCCAG ctcagggtgtcacagtcactctgcagcatgctttgcttcccttccaccagggTGTCGTAGCCACTCTGCAGCACAATTCTTAGTTGGAGACCAGGAGCCCTGGGCCTTTAGGGGTGGTCTAGCAGGAGAGTTCCAGgtaaatagaagaaagctatatgcggtctgttgccaatataacaccttaca Alignment from CESAR ggTGTCGTAGTCACTCTTCAGCACAGTTCTTAATTGGAGACCAGGAGCCCTGGGCCTTTAGAGGTGGTCTAGCAGGAGAGTTCCAG ctcagggtgtcacagtcactctgcagcatgctttgcttcccttccaccagggTGTCGTAGCCACTCTGCAGCACAATTCTTAGTTGGAGACCAGGAGCCCTGGGCCTTTAGGGGTGGTCTAGCAGGAGAGTTCCAGgtaaatagaagaaagctatatgcggtctgttgccaatataacaccttaca Alignment from Spaln_aa2Genome GGTGTCGTAGTCACTCTTCAGCACAGTTCTTAATTGGAGACCAGGAGCCCTGGGCCTTTAGAGGTGGTCTAGCAGGAGAGTTCCAG ctcagggtgtcacagtcactctgcagcatgctttgcttcccttccaccagGGTGTCGTAGCCACTCTGCAGCACAATTCTTAGTTGGAGACCAGGAGCCCTGGGCCTTTAGGGGTGGTCTAGCAGGAGAGTTCCAGgtaaatagaagaaagctatatgcggtctgttgccaatataacaccttaca Alignment from Spaln_nt2Genome GGTGTCGTAGTCACTCTTCAGCACAGTTCTTAATTGGAGACCAGGAGCCCTGGGCCTTTAGAGGTGGTCTAGCAGGAGAGTTCCAG ctcagggtgtcacagtcactctgcagcatgctttgcttcccttccaccagGGTGTCGTAGCCACTCTGCAGCACAATTCTTAGTTGGAGACCAGGAGCCCTGGGCCTTTAGGGGTGGTCTAGCAGGAGAGTTCCAGgtaaatagaagaaagctatatgcggtctgttgccaatataacaccttaca Alignment from Pairagon GGTGTCGTAGTCACTCTTCAGCACAGTTCTTAATTGGAGACCAGGAGCCCTGGGCCTTTAGAGGTGGTCTAGCAGGAGAGTTCCAG ctcagggtgtcacagtcactctgcagcatgctttgcttcccttccaccagGGTGTCGTAGCCACTCTGCAGCACAATTCTTAGTTGGAGACCAGGAGCCCTGGGCCTTTAGGGGTGGTCTAGCAGGAGAGTTCCAGgtaaatagaagaaagctatatgcggtctgttgccaatataacaccttaca Alignment from Exonerate_protein2genome GGTGTCGTAGTCACTCTTCAGCACAGTTCTTAATTGGAGACCAGGAGCCCTGGGCCTTTAGAGGTGGTCTAGCAGGAGAGTTCCAG ctcagggtgtcacagtcactctgcagcatgctttgcttcccttccaccagGGTGTCGTAGCCACTCTGCAGCACAATTCTTAGTTGGAGACCAGGAGCCCTGGGCCTTTAGGGGTGGTCTAGCAGGAGAGTTCCAGgtaaatagaagaaagctatatgcggtctgttgccaatataacaccttaca Alignment from Exonerate_coding2genome GGTGTCGTAGTCACTCTTCAGCACAGTTCTTAATTGGAGACCAGGAGCCCTGGGCCTTTAGAGGTGGTCTAGCAGGAGAGTTCCAG ctcagggtgtcacagtcactctgcagcatgctttgcttcccttccaccagGGTGTCGTAGCCACTCTGCAGCACAATTCTTAGTTGGAGACCAGGAGCCCTGGGCCTTTAGGGGTGGTCTAGCAGGAGAGTTCCAGgtaaatagaagaaagctatatgcggtctgttgccaatataacaccttaca Alignment from GeneWise GGTGTCGTAGTCACTCTTCAGCACAGTTCTTAATTGGAGACCAGGAGCCCTGGGCCTTTAGAGGTGGTCTAGCAGGAGAGTTCCAG ctcagggtgtcacagtcactctgcagcatgctttgcttcccttccaccagGGTGTCGTAGCCACTCTGCAGCACAATTCTTAGTTGGAGACCAGGAGCCCTGGGCCTTTAGGGGTGGTCTAGCAGGAGAGTTCCAGgtaaatagaagaaagctatatgcggtctgttgccaatataacaccttaca #### Mgea5_ID9593_8 --> 2 - 1 Original Alignment ctGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCa ccttaggagtcccctggaggggggatccccctctctgcttctgtctccagctGACAGTGAAGATAGTATGGTTTCAATACACATAAAGCTGGAGAATGAGGATGGTGACAAAGACATTGACACTGATGTCCTGTACAGTCCACAGATGGCCTTTAAGTTAGCCCTAACTGAGTGGTTGCAAGAGATTGGTGTCCCTCACCAATACAGCagtaagttaagctgtgagcctcccaggccacagtatttgtataagtccctc Alignment from CESAR ctGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCa ccttaggagtcccctggaggggggatccccctctctgcttctgtctccagctGACAGTGAAGATAGTATGGTTTCAATACACATAAAGCTGGAGAATGAGGATGGTGACAAAGACATTGACACTGATGTCCTGTACAGTCCACAGATGGCCTTTAAGTTAGCCCTAACTGAGTGGTTGCAAGAGATTGGTGTCCCTCACCAATACAGCagtaagttaagctgtgagcctcccaggccacagtatttgtataagtccctc Alignment from Spaln_aa2Genome CTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCA ccttaggagtcccctggaggggggatccccctctctgcttctgtctccagCTGACAGTGAAGATAGTATGGTTTCAATACACATAAAGCTGGAGAATGAGGATGGTGACAAAGACATTGACACTGATGTCCTGTACAGTCCACAGATGGCCTTTAAGTTAGCCCTAACTGAGTGGTTGCAAGAGATTGGTGTCCCTCACCAATACAGCAgtaagttaagctgtgagcctcccaggccacagtatttgtataagtccctc Alignment from Spaln_nt2Genome CTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCA ccttaggagtcccctggaggggggatccccctctctgcttctgtctccagCTGACAGTGAAGATAGTATGGTTTCAATACACATAAAGCTGGAGAATGAGGATGGTGACAAAGACATTGACACTGATGTCCTGTACAGTCCACAGATGGCCTTTAAGTTAGCCCTAACTGAGTGGTTGCAAGAGATTGGTGTCCCTCACCAATACAGCAgtaagttaagctgtgagcctcccaggccacagtatttgtataagtccctc Alignment from Pairagon CTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCA ccttaggagtcccctggaggggggatccccctctctgcttctgtctccagCTGACAGTGAAGATAGTATGGTTTCAATACACATAAAGCTGGAGAATGAGGATGGTGACAAAGACATTGACACTGATGTCCTGTACAGTCCACAGATGGCCTTTAAGTTAGCCCTAACTGAGTGGTTGCAAGAGATTGGTGTCCCTCACCAATACAGCAgtaagttaagctgtgagcctcccaggccacagtatttgtataagtccctc Alignment from Exonerate_protein2genome CTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCA ccttaggagtcccctggaggggggatccccctctctgcttctgtctccagCTGACAGTGAAGATAGTATGGTTTCAATACACATAAAGCTGGAGAATGAGGATGGTGACAAAGACATTGACACTGATGTCCTGTACAGTCCACAGATGGCCTTTAAGTTAGCCCTAACTGAGTGGTTGCAAGAGATTGGTGTCCCTCACCAATACAGCAgtaagttaagctgtgagcctcccaggccacagtatttgtataagtccctc Alignment from Exonerate_coding2genome CTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCA ccttaggagtcccctggaggggggatccccctctctgcttctgtctccagCTGACAGTGAAGATAGTATGGTTTCAATACACATAAAGCTGGAGAATGAGGATGGTGACAAAGACATTGACACTGATGTCCTGTACAGTCCACAGATGGCCTTTAAGTTAGCCCTAACTGAGTGGTTGCAAGAGATTGGTGTCCCTCACCAATACAGCAgtaagttaagctgtgagcctcccaggccacagtatttgtataagtccctc Alignment from GeneWise CTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCA ccttaggagtcccctggaggggggatccccctctctgcttctgtctccagCTGACAGTGAAGATAGTATGGTTTCAATACACATAAAGCTGGAGAATGAGGATGGTGACAAAGACATTGACACTGATGTCCTGTACAGTCCACAGATGGCCTTTAAGTTAGCCCTAACTGAGTGGTTGCAAGAGATTGGTGTCCCTCACCAATACAGCAgtaagttaagctgtgagcctcccaggccacagtatttgtataagtccctc #### Mgea5_ID9594_7 --> 2 - 1 Original Alignment gtCCAAAAGTTGTTTCAAAAGAAATTCCAGTGGAATCTATTGAAGAAGTTTCTAAGATCATTAAGAGAGCTCCAGTGATCTGGGATAACATTCATGCTAATGATTATGATCAGAAGAGGCTGTTTCTGGGTCCCTACAAAGGAAGATCCACAGAGCTCATCCCACGGTTAAAGGGAGTACTAACCAATCCAAATTGTGAATTTGAAGCTAACTACGTTGCCATACACACCCTTGCCACTTGGTACAAGTCAAACATGAACGGAGTGAGGAAGGATGTGGTGATGa gaattatcctgtctgggttgtgggtcatacagtgcctgtctcctctgcaggtCCAAAAGTTGTCTCAAAAGAAATTCCAGTAGAATCAATTGAAGAAGTTTCTAAAATGATTAAGAGAGCACCAGTTATCTGGGATAATATTCATGCTAATGATTATGATCAGAAGAGGCTGTTTCTTGGTCCTTATAAAGGAAGATCCACTGAGCTCATCCCACGGTTAAAGGGAGTACTAACCAATCCCAATTGTGAGTTTGAGGCTAACTATGTCGCAATACACACCCTTACCACTTGGTATAAGTCAAATATGAATGGAGTGAGGAAGGACGTGGTGATGagtaagcaggaggctgttagtggtgaactttacatttatctacttcctaga Alignment from CESAR gtCCAAAAGTTGTTTCAAAAGAAATTCCAGTGGAATCTATTGAAGAAGTTTCTAAGATCATTAAGAGAGCTCCAGTGATCTGGGATAACATTCATGCTAATGATTATGATCAGAAGAGGCTGTTTCTGGGTCCCTACAAAGGAAGATCCACAGAGCTCATCCCACGGTTAAAGGGAGTACTAACCAATCCAAATTGTGAATTTGAAGCTAACTACGTTGCCATACACACCCTTGCCACTTGGTACAAGTCAAACATGAACGGAGTGAGGAAGGATGTGGTGATGa gaattatcctgtctgggttgtgggtcatacagtgcctgtctcctctgcaggtCCAAAAGTTGTCTCAAAAGAAATTCCAGTAGAATCAATTGAAGAAGTTTCTAAAATGATTAAGAGAGCACCAGTTATCTGGGATAATATTCATGCTAATGATTATGATCAGAAGAGGCTGTTTCTTGGTCCTTATAAAGGAAGATCCACTGAGCTCATCCCACGGTTAAAGGGAGTACTAACCAATCCCAATTGTGAGTTTGAGGCTAACTATGTCGCAATACACACCCTTACCACTTGGTATAAGTCAAATATGAATGGAGTGAGGAAGGACGTGGTGATGagtaagcaggaggctgttagtggtgaactttacatttatctacttcctaga Alignment from Spaln_aa2Genome GTCCAAAAGTTGTTTCAAAAGAAATTCCAGTGGAATCTATTGAAGAAGTTTCTAAGATCATTAAGAGAGCTCCAGTGATCTGGGATAACATTCATGCTAATGATTATGATCAGAAGAGGCTGTTTCTGGGTCCCTACAAAGGAAGATCCACAGAGCTCATCCCACGGTTAAAGGGAGTACTAACCAATCCAAATTGTGAATTTGAAGCTAACTACGTTGCCATACACACCCTTGCCACTTGGTACAAGTCAAACATGAACGGAGTGAGGAAGGATGTGGTGATGA gaattatcctgtctgggttgtgggtcatacagtgcctgtctcctctgcagGTCCAAAAGTTGTCTCAAAAGAAATTCCAGTAGAATCAATTGAAGAAGTTTCTAAAATGATTAAGAGAGCACCAGTTATCTGGGATAATATTCATGCTAATGATTATGATCAGAAGAGGCTGTTTCTTGGTCCTTATAAAGGAAGATCCACTGAGCTCATCCCACGGTTAAAGGGAGTACTAACCAATCCCAATTGTGAGTTTGAGGCTAACTATGTCGCAATACACACCCTTACCACTTGGTATAAGTCAAATATGAATGGAGTGAGGAAGGACGTGGTGATGAgtaagcaggaggctgttagtggtgaactttacatttatctacttcctaga Alignment from Spaln_nt2Genome GTCCAAAAGTTGTTTCAAAAGAAATTCCAGTGGAATCTATTGAAGAAGTTTCTAAGATCATTAAGAGAGCTCCAGTGATCTGGGATAACATTCATGCTAATGATTATGATCAGAAGAGGCTGTTTCTGGGTCCCTACAAAGGAAGATCCACAGAGCTCATCCCACGGTTAAAGGGAGTACTAACCAATCCAAATTGTGAATTTGAAGCTAACTACGTTGCCATACACACCCTTGCCACTTGGTACAAGTCAAACATGAACGGAGTGAGGAAGGATGTGGTGATGA gaattatcctgtctgggttgtgggtcatacagtgcctgtctcctctgcagGTCCAAAAGTTGTCTCAAAAGAAATTCCAGTAGAATCAATTGAAGAAGTTTCTAAAATGATTAAGAGAGCACCAGTTATCTGGGATAATATTCATGCTAATGATTATGATCAGAAGAGGCTGTTTCTTGGTCCTTATAAAGGAAGATCCACTGAGCTCATCCCACGGTTAAAGGGAGTACTAACCAATCCCAATTGTGAGTTTGAGGCTAACTATGTCGCAATACACACCCTTACCACTTGGTATAAGTCAAATATGAATGGAGTGAGGAAGGACGTGGTGATGAgtaagcaggaggctgttagtggtgaactttacatttatctacttcctaga Alignment from Pairagon GTCCAAAAGTTGTTTCAAAAGAAATTCCAGTGGAATCTATTGAAGAAGTTTCTAAGATCATTAAGAGAGCTCCAGTGATCTGGGATAACATTCATGCTAATGATTATGATCAGAAGAGGCTGTTTCTGGGTCCCTACAAAGGAAGATCCACAGAGCTCATCCCACGGTTAAAGGGAGTACTAACCAATCCAAATTGTGAATTTGAAGCTAACTACGTTGCCATACACACCCTTGCCACTTGGTACAAGTCAAACATGAACGGAGTGAGGAAGGATGTGGTGATGA gaattatcctgtctgggttgtgggtcatacagtgcctgtctcctctgcagGTCCAAAAGTTGTCTCAAAAGAAATTCCAGTAGAATCAATTGAAGAAGTTTCTAAAATGATTAAGAGAGCACCAGTTATCTGGGATAATATTCATGCTAATGATTATGATCAGAAGAGGCTGTTTCTTGGTCCTTATAAAGGAAGATCCACTGAGCTCATCCCACGGTTAAAGGGAGTACTAACCAATCCCAATTGTGAGTTTGAGGCTAACTATGTCGCAATACACACCCTTACCACTTGGTATAAGTCAAATATGAATGGAGTGAGGAAGGACGTGGTGATGAgtaagcaggaggctgttagtggtgaactttacatttatctacttcctaga Alignment from Exonerate_protein2genome GTCCAAAAGTTGTTTCAAAAGAAATTCCAGTGGAATCTATTGAAGAAGTTTCTAAGATCATTAAGAGAGCTCCAGTGATCTGGGATAACATTCATGCTAATGATTATGATCAGAAGAGGCTGTTTCTGGGTCCCTACAAAGGAAGATCCACAGAGCTCATCCCACGGTTAAAGGGAGTACTAACCAATCCAAATTGTGAATTTGAAGCTAACTACGTTGCCATACACACCCTTGCCACTTGGTACAAGTCAAACATGAACGGAGTGAGGAAGGATGTGGTGATGA gaattatcctgtctgggttgtgggtcatacagtgcctgtctcctctgcagGTCCAAAAGTTGTCTCAAAAGAAATTCCAGTAGAATCAATTGAAGAAGTTTCTAAAATGATTAAGAGAGCACCAGTTATCTGGGATAATATTCATGCTAATGATTATGATCAGAAGAGGCTGTTTCTTGGTCCTTATAAAGGAAGATCCACTGAGCTCATCCCACGGTTAAAGGGAGTACTAACCAATCCCAATTGTGAGTTTGAGGCTAACTATGTCGCAATACACACCCTTACCACTTGGTATAAGTCAAATATGAATGGAGTGAGGAAGGACGTGGTGATGAgtaagcaggaggctgttagtggtgaactttacatttatctacttcctaga Alignment from Exonerate_coding2genome GTCCAAAAGTTGTTTCAAAAGAAATTCCAGTGGAATCTATTGAAGAAGTTTCTAAGATCATTAAGAGAGCTCCAGTGATCTGGGATAACATTCATGCTAATGATTATGATCAGAAGAGGCTGTTTCTGGGTCCCTACAAAGGAAGATCCACAGAGCTCATCCCACGGTTAAAGGGAGTACTAACCAATCCAAATTGTGAATTTGAAGCTAACTACGTTGCCATACACACCCTTGCCACTTGGTACAAGTCAAACATGAACGGAGTGAGGAAGGATGTGGTGATGA gaattatcctgtctgggttgtgggtcatacagtgcctgtctcctctgcagGTCCAAAAGTTGTCTCAAAAGAAATTCCAGTAGAATCAATTGAAGAAGTTTCTAAAATGATTAAGAGAGCACCAGTTATCTGGGATAATATTCATGCTAATGATTATGATCAGAAGAGGCTGTTTCTTGGTCCTTATAAAGGAAGATCCACTGAGCTCATCCCACGGTTAAAGGGAGTACTAACCAATCCCAATTGTGAGTTTGAGGCTAACTATGTCGCAATACACACCCTTACCACTTGGTATAAGTCAAATATGAATGGAGTGAGGAAGGACGTGGTGATGAgtaagcaggaggctgttagtggtgaactttacatttatctacttcctaga Alignment from GeneWise GTCCAAAAGTTGTTTCAAAAGAAATTCCAGTGGAATCTATTGAAGAAGTTTCTAAGATCATTAAGAGAGCTCCAGTGATCTGGGATAACATTCATGCTAATGATTATGATCAGAAGAGGCTGTTTCTGGGTCCCTACAAAGGAAGATCCACAGAGCTCATCCCACGGTTAAAGGGAGTACTAACCAATCCAAATTGTGAATTTGAAGCTAACTACGTTGCCATACACACCCTTGCCACTTGGTACAAGTCAAACATGAACGGAGTGAGGAAGGATGTGGTGATGA gaattatcctgtctgggttgtgggtcatacagtgcctgtctcctctgcagGTCCAAAAGTTGTCTCAAAAGAAATTCCAGTAGAATCAATTGAAGAAGTTTCTAAAATGATTAAGAGAGCACCAGTTATCTGGGATAATATTCATGCTAATGATTATGATCAGAAGAGGCTGTTTCTTGGTCCTTATAAAGGAAGATCCACTGAGCTCATCCCACGGTTAAAGGGAGTACTAACCAATCCCAATTGTGAGTTTGAGGCTAACTATGTCGCAATACACACCCTTACCACTTGGTATAAGTCAAATATGAATGGAGTGAGGAAGGACGTGGTGATGAgtaagcaggaggctgttagtggtgaactttacatttatctacttcctaga #### Mlana_ID6334_2 --> 1 - 0 Original Alignment gGCCGCAGGGATCGGCATCCTGATCGTGGTCCTGGGGATTGCTCTGCTTATCGGCTGCTGGTACTGTAGAAGACGAAGTGGATACAGAACCTTGATG atccagagcaatgtttctaagagcaatcctgctgcttttccccctaacaggGCAGCAGGCATTGGTATACTGATTGTTGTCTTGGGAATTGCACTTCTGATTGGCTGTTGGTACTGTAAAAGGCATAGTGGATATAGAACTCTTATGgtgagtactgggtagtttaggatagactctctatgattgttgcttgacat Alignment from CESAR gGCCGCAGGGATCGGCATCCTGATCGTGGTCCTGGGGATTGCTCTGCTTATCGGCTGCTGGTACTGTAGAAGACGAAGTGGATACAGAACCTTGATG atccagagcaatgtttctaagagcaatcctgctgcttttccccctaacaggGCAGCAGGCATTGGTATACTGATTGTTGTCTTGGGAATTGCACTTCTGATTGGCTGTTGGTACTGTAAAAGGCATAGTGGATATAGAACTCTTATGgtgagtactgggtagtttaggatagactctctatgattgttgcttgacat Alignment from Spaln_aa2Genome GGCCGCAGGGATCGGCATCCTGATCGTGGTCCTGGGGATTGCTCTGCTTATCGGCTGCTGGTACTGTAGAAGACGAAGTGGATACAGAACCTTGATG atccagagcaatgtttctaagagcaatcctgctgcttttccccctaacagGGCAGCAGGCATTGGTATACTGATTGTTGTCTTGGGAATTGCACTTCTGATTGGCTGTTGGTACTGTAAAAGGCATAGTGGATATAGAACTCTTATGgtgagtactgggtagtttaggatagactctctatgattgttgcttgacat Alignment from Spaln_nt2Genome GGCCGCAGGGATCGGCATCCTGATCGTGGTCCTGGGGATTGCTCTGCTTATCGGCTGCTGGTACTGTAGAAGACGAAGTGGATACAGAACCTTGATG atccagagcaatgtttctaagagcaatcctgctgcttttccccctaacagGGCAGCAGGCATTGGTATACTGATTGTTGTCTTGGGAATTGCACTTCTGATTGGCTGTTGGTACTGTAAAAGGCATAGTGGATATAGAACTCTTATGgtgagtactgggtagtttaggatagactctctatgattgttgcttgacat Alignment from Pairagon No alignment No alignment Alignment from Exonerate_protein2genome GGCCGCAGGGATCGGCATCCTGATCGTGGTCCTGGGGATTGCTCTGCTTATCGGCTGCTGGTACTGTAGAAGACGAAGTGGATACAGAACCTTGATG atccagagcaatgtttctaagagcaatcctgctgcttttccccctaacagGGCAGCAGGCATTGGTATACTGATTGTTGTCTTGGGAATTGCACTTCTGATTGGCTGTTGGTACTGTAAAAGGCATAGTGGATATAGAACTCTTATGgtgagtactgggtagtttaggatagactctctatgattgttgcttgacat Alignment from Exonerate_coding2genome atccagagcaatgtttctaagagcaatcctgctgcttttccccctaacagggcagcaggcattggtatactgattgttgtcttgggaattgcacttctgattggctgttggtactgtaaaaggcatagtggatatagaactcttatggtgagtactgggtagtttaggatagactctctatgattgttgcttgacat Alignment from GeneWise GGCCGCAGGGATCGGCATCCTGATCGTGGTCCTGGGGATTGCTCTGCTTATCGGCTGCTGGTACTGTAGAAGACGAAGTGGATACAGAACCTTGATG atccagagcaatgtttctaagagcaatcctgctgcttttccccctaacagGGCAGCAGGCATTGGTATACTGATTGTTGTCTTGGGAATTGCACTTCTGATTGGCTGTTGGTACTGTAAAAGGCATAGTGGATATAGAACTCTTATGgtgagtactgggtagtttaggatagactctctatgattgttgcttgacat #### Morn4_ID8390_2 --> 2 - 2 Original Alignment gcCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAag ttgaaaatgcttggcagatgtaaatctaatatgtagttaatattttctaggcTGGAGACATGGCTTTGGTCAACTGGTGTTTGCAGATGGTGGCACCTACTTGGGACACTTCAAAAATGGGCTTTTTAATGGACTTGGGGTCTTGACCTTCTCTGATGGTTCAaggtgtgtacaatagcagcaagattatagtacagatgaggtaccatcacttt Alignment from CESAR gcCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAag ttgaaaatgcttggcagatgtaaatctaatatgtagttaatattttctaggcTGGAGACATGGCTTTGGTCAACTGGTGTTTGCAGATGGTGGCACCTACTTGGGACACTTCAAAAATGGGCTTTTTAATGGACTTGGGGTCTTGACCTTCTCTGATGGTTCAaggtgtgtacaatagcagcaagattatagtacagatgaggtaccatcacttt Alignment from Spaln_aa2Genome ACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAAG ttgaaaatgcttggcagatgtaaatctaatatgtagttaatattttctaggctggagACATGGCTTTGGTCAACTGGTGTTTGCAGATGGTGGCACCTACTTGGGACACTTCAAAAATGGGCTTTTTAATGGACTTGGGGTCTTGACCTTCTCTGATGGTTCAAGgtgtgtacaatagcagcaagattatagtacagatgaggtaccatcacttt Alignment from Spaln_nt2Genome GCCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAAG ttgaaaatgcttggcagatgtaaatctaatatgtagttaatattttctagGCTGGAGACATGGCTTTGGTCAACTGGTGTTTGCAGATGGTGGCACCTACTTGGGACACTTCAAAAATGGGCTTTTTAATGGACTTGGGGTCTTGACCTTCTCTGATGGTTCAAGgtgtgtacaatagcagcaagattatagtacagatgaggtaccatcacttt Alignment from Pairagon GCCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAAG ttgaaaatgcttggcagatgtaaatctaatatgtagttaatattttctagGCTGGAGACATGGCTTTGGTCAACTGGTGTTTGCAGATGGTGGCACCTACTTGGGACACTTCAAAAATGGGCTTTTTAATGGACTTGGGGTCTTGACCTTCTCTGATGGTTCAAGgtgtgtacaatagcagcaagattatagtacagatgaggtaccatcacttt Alignment from Exonerate_protein2genome GCCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAAG ttgaaaatgcttggcagatgtaaatctaatatgtagttaatattttctagGCTGGAGACATGGCTTTGGTCAACTGGTGTTTGCAGATGGTGGCACCTACTTGGGACACTTCAAAAATGGGCTTTTTAATGGACTTGGGGTCTTGACCTTCTCTGATGGTTCAAGgtgtgtacaatagcagcaagattatagtacagatgaggtaccatcacttt Alignment from Exonerate_coding2genome GCCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAAG ttgaaaatgcttggcagatgtaaatctaatatgtagttaatattttctagGCTGGAGACATGGCTTTGGTCAACTGGTGTTTGCAGATGGTGGCACCTACTTGGGACACTTCAAAAATGGGCTTTTTAATGGACTTGGGGTCTTGACCTTCTCTGATGGTTCAAGgtgtgtacaatagcagcaagattatagtacagatgaggtaccatcacttt Alignment from GeneWise GCCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAAG ttgaaaatgcttggcagatgtaaatctaatatgtagttaatattttctagGCTGGAGACATGGCTTTGGTCAACTGGTGTTTGCAGATGGTGGCACCTACTTGGGACACTTCAAAAATGGGCTTTTTAATGGACTTGGGGTCTTGACCTTCTCTGATGGTTCAAGgtgtgtacaatagcagcaagattatagtacagatgaggtaccatcacttt #### Mrpl11_ID767_2 --> 0 - 0 Original Alignment CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG ggacattactcctcagaagattcataccctgtctcttcctctctccacagCGCGGTGTCTCAATTAACCAGTTCTGTAAAGAATTCAATGAGAAGACAAAGGACATTAAAGAGGGCATTCTTTTGGCAACGAAAATTTTCATAGAGgtaagggacccattgaccaactcactttggagcattgtattctaaacata Alignment from CESAR CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG ggacattactcctcagaagattcataccctgtctcttcctctctccacagCGCGGTGTCTCAATTAACCAGTTCTGTAAAGAATTCAATGAGAAGACAAAGGACATTAAAGAGGGCATTCTTTTGGCAACGAAAATTTTCATAGAGgtaagggacccattgaccaactcactttggagcattgtattctaaacata Alignment from Spaln_aa2Genome CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG ggacattactcctcagaagattcataccctgtctcttcctctctccacagCGCGGTGTCTCAATTAACCAGTTCTGTAAAGAATTCAATGAGAAGACAAAGGACATTAAAGAGGGCATTCTTTTGGCAACGAAAATTTTCATAGAGgtaagggacccattgaccaactcactttggagcattgtattctaaacata Alignment from Spaln_nt2Genome CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG ggacattactcctcagaagattcataccctgtctcttcctctctccacagCGCGGTGTCTCAATTAACCAGTTCTGTAAAGAATTCAATGAGAAGACAAAGGACATTAAAGAGGGCATTCTTTTGGCAACGAAAATTTTCATAGAGgtaagggacccattgaccaactcactttggagcattgtattctaaacata Alignment from Pairagon CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG ggacattactcctcagaagattcataccctgtctcttcctctctccacagCGCGGTGTCTCAATTAACCAGTTCTGTAAAGAATTCAATGAGAAGACAAAGGACATTAAAGAGGGCATTCTTTTGGCAACGAAAATTTTCATAGAGgtaagggacccattgaccaactcactttggagcattgtattctaaacata Alignment from Exonerate_protein2genome CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAGCCCGACAGGACATTTGAGCT ggacattactcctcagaagattcataccctgtctcttcctctctccacagCGCGGTGTCTCAATTAACCAGTTCTGTAAAGAATTCAATGAGAAGACAAAGGACATTAAAGAGGGCATTCTTTTGGCAACGAAAATTTTCATAGAGGTAAGGGACCCATTGACCAActcactttggagcattgtattctaaacata Alignment from Exonerate_coding2genome CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG ggacattactcctcagaagattcataccctgtctcttcctctctccacagCGCGGTGTCTCAATTAACCAGTTCTGTAAAGAATTCAATGAGAAGACAAAGGACATTAAAGAGGGCATTCTTTTGGCAACGAAAATTTTCATAGAGgtaagggacccattgaccaactcactttggagcattgtattctaaacata Alignment from GeneWise CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG ggacattactcctcagaagattcataccctgtctcttcctctctccacagCGCGGTGTCTCAATTAACCAGTTCTGTAAAGAATTCAATGAGAAGACAAAGGACATTAAAGAGGGCATTCTTTTGGCAACGAAAATTTTCATAGAGgtaagggacccattgaccaactcactttggagcattgtattctaaacata #### Mrpl11_ID769_4 --> 2 - 2 Original Alignment ggAAAGAGGTGGCAGGCCTGGTGAGTTTGAAGCAC---GTATATGAGATTGCCTGTGTCAAAGCTAAGGATGATGCTTTTGCCATGCAAGATGTGCCCCTGTCTTCTGTGGTCCGTTCCATCATTGGCTCTGCCCGTTCCCTGGGCATTCGAGTGGTGAAGga aaggcaccaaggaccaaatagccctcaagtcccttcctggtctctggcagggAAAGAGGTGGCGGGCTTAGTGAGTTTGAAGCAGTATGTATTCGAAATCTCATGTGTCGAAGCTAAAGAAGAGGCTTTTGCCATGCAAGATGTGCCCTTGTCATCT---------TCTGTT------TCTGCCCGTTCTTTGAGCGTTTGGGTAGTGAAGgagtgagttatatgacaagaaggtaataaattgtctatttgatgggaaatga Alignment from CESAR ggAAAGAGGTGGCAGGCCTGGTGAGTTTGAAGCAC---GTATATGAGATTGCCTGTGTCAAAGCTAAGGATGATGCTTTTGCCATGCAAGATGTGCCCCTGTCTTCTGTGGTCCGTTCCATCATTGGCTCTGCCCGTTCCCTGGGCATTCGAGTGGTGAAGga aaggcaccaaggaccaaatagccctcaagtcccttcctggtctctggcagggAAAGAGGTGGCGGGCTTAGTGAGTTTGAAGCAGTATGTATTCGAAATCTCATGTGTCGAAGCTAAAGAAGAGGCTTTTGCCATGCAAGATGTGCCCTTGTCATCTTCTGTT---------------TCTGCCCGTTCTTTGAGCGTTTGGGTAGTGAAGgagtgagttatatgacaagaaggtaataaattgtctatttgatgggaaatga Alignment from Spaln_aa2Genome GGAAAGAGGTGGCAGGCCTGGTGAGTTTGAAG---CACGTATATGAGATTGCCTGTGTCAAAGCTAAGGATGATGCTTTTGCCATGCAAGATGTGCCCCTGTCTTCTGTGGTCCGTTCCATCATTGGCTCTGCCCGTTCCCTGGGCATTCGAGTGGTGAAGGA aaggcaccaaggaccaaatagccctcaagtcccttcctggtctctggcagGGAAAGAGGTGGCGGGCTTAGTGAGTTTGAAGCAGTATGTATTCGAAATCTCATGTGTCGAAGCTAAAGAAGAGGCTTTTGCCATGCAAGATGTGCCCTTGTCATCTTCTGTT---------------TCTGCCCGTTCTTTGAGCGTTTGGGTAGTGAAGGAgtgagttatatgacaagaaggtaataaattgtctatttgatgggaaatga Alignment from Spaln_nt2Genome GGAAAGAGGTGGCAGGCCTGGTGAGTTTGAAGCAC---GTATATGAGATTGCCTGTGTCAAAGCTAAGGATGATGCTTTTGCCATGCAAGATGTGCCCCTGTCTTCTGTGGTCCGTTCCATCATTGGCTCTGCCCGTTCCCTGGGCATTCGAGTGGTGAAGGA aaggcaccaaggaccaaatagccctcaagtcccttcctggtctctggcagGGAAAGAGGTGGCGGGCTTAGTGAGTTTGAAGCAGTATGTATTCGAAATCTCATGTGTCGAAGCTAAAGAAGAGGCTTTTGCCATGCAAGATGTGCCCTTGTCATCT----TCTGTT-----------TCTGCCCGTTCTTTGAGCGTTTGGGTAGTGAAGGAgtgagttatatgacaagaaggtaataaattgtctatttgatgggaaatga Alignment from Pairagon GGAAAGAGGTGGCAGGCCTGGTGAGTTTGAAGC---ACGTATATGAGATTGCCTGTGTCAAAGCTAAGGATGATGCTTTTGCCATGCAAGATGTGCCCCTG---TCTTCTGTGGTCCGTTCCATCATTGGCTCTGCCCGTTCCCTGGGCATTCGAGTGGTGAAGGA aaggcaccaaggaccaaatagccctcaagtcccttcctggtctctggcagGGAAAGAGGTGGCGGGCTTAGTGAGTTTGAAGCAGTATGTATTCGAAATCTCATGTGTCGAAGCTAAAGAAGAGGCTTTTGCCATGCAAGATGTGCCCTTGTCATCTTCTGT------------------TTCTGCCCGTTCTTTGAGCGTTTGGGTAGTGAAGGAgtgagttatatgacaagaaggtaataaattgtctatttgatgggaaatga Alignment from Exonerate_protein2genome GGAAAGAGGTGGCAGGCCTGGTGAGTTTGAAG---CACGTATATGAGATTGCCTGTGTCAAAGCTAAGGATGATGCTTTTGCCATGCAAGATGTGCCCCTGTCTTCTGTGGTCCGTTCCATCATTGGCTCTGCCCGTTCCCTGGGCATTCGAGTGGTGAAGGA aaggcaccaaggaccaaatagccctcaagtcccttcctggtctctggcagGGAAAGAGGTGGCGGGCTTAGTGAGTTTGAAGCAGTATGTATTCGAAATCTCATGTGTCGAAGCTAAAGAAGAGGCTTTTGCCATGCAAGATGTGCCCTTGTCATCTTCTGTT---------------TCTGCCCGTTCTTTGAGCGTTTGGGTAGTGAAGGAgtgagttatatgacaagaaggtaataaattgtctatttgatgggaaatga Alignment from Exonerate_coding2genome TTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAGGGAAAGAGGTGGCAGGCCTGGTGAGTTTGAAG---CACGTATATGAGATTGCCTGTGTCAAAGCTAAGGATGATGCTTTTGCCATGCAAGATGTGCCCCTGTCTTCTGTGGTC AAGGCACCAAGGACCAAATAGCCCTCAAGTCCCTTCCTGGTCTCTGGCAGGGAAAGAGGTGGCGGGCTTAGTGAGTTTGAAGCAGTATGTATTCGAAATCTCATGTGTCGAAGCTAAAGAAGAGGCTTTTGCCATGCAAGATGTGCCCTTGTCATCTTCTGTTtctgcccgttctttgagcgtttgggtagtgaaggagtgagttatatgacaagaaggtaataaattgtctatttgatgggaaatga Alignment from GeneWise ----------------------------------------------------AAAGAGGTGGCAGGCCTGGTGAGTTTGAAG---CACGTATATGAGATTGCCTGTGTCAAAGCTAAGGATGATGCTTTTGCCATGCAAGATGTGCCCCTGTCTTCTGTGGTCCGTTCCATCATTGGCTCTGCCCGTTCCCTGGGCATTCGAGTGGTGAAGGA AAGGCACCAAGGACCAAATAGCCCTCAAGTCCCTTCCTGGTCTCTGGCAGGGAAAGAGGTGGCGGGCTTAGTGAGTTTGAAGCAGTATGTATTCGAAATCTCATGTGTCGAAGCTAAAGAAGAGGCTTTTGCCATGCAAGATGTGCCCTTGTCATCTTCTGTT---------------TCTGCCCGTTCTTTGAGCGTTTGGGTAGTGAAGGAgtgagttatatgacaagaaggtaataaattgtctatttgatgggaaatga #### Mrpl21_ID23_5 --> 0 - 2 Original Alignment GTCCTGCTGGTTGGGGCAGACAACTTCACACTCCTGGGCAAGCCACTCCTCcg agtatgatatagtatgttttccggacggtttgtgactttttgttttctagGTCCTGCTTGTTGGTGGAGATAATCTTACATTGCTGGGTAAGCCATTACTCcagtaggggctgctcagagcatgagtgtggcctagttctccaattggctgca Alignment from CESAR GTCCTGCTGGTTGGGGCAGACAACTTCACACTCCTGGGCAAGCCACTCCTCcg agtatgatatagtatgttttccggacggtttgtgactttttgttttctagGTCCTGCTTGTTGGTGGAGATAATCTTACATTGCTGGGTAAGCCATTACTCcagtaggggctgctcagagcatgagtgtggcctagttctccaattggctgca Alignment from Spaln_aa2Genome GTCCTGCTGGTTGGGGCAGACAACTTCACACTCCTGGGCAAGCCACTCCTCCG agtatgatatagtatgttttccggacggtttgtgactttttgttttctagGTCCTGCTTGTTGGTGGAGATAATCTTACATTGCTGGGTAAGCCATTACTCCAgtaggggctgctcagagcatgagtgtggcctagttctccaattggctgca Alignment from Spaln_nt2Genome GTCCTGCTGGTTGGGGCAGACAACTTCACACTCCTGGGCAAGCCACTCCTCCG agtatgatatagtatgttttccggacggtttgtgactttttgttttctagGTCCTGCTTGTTGGTGGAGATAATCTTACATTGCTGGGTAAGCCATTACTCCAgtaggggctgctcagagcatgagtgtggcctagttctccaattggctgca Alignment from Pairagon GTCCTGCTGGTTGGGGCAGACAACTTCACACTCCTGGGCAAGCCACTCCTCCG agtatgatatagtatgttttccggacggtttgtgactttttgttttctagGTCCTGCTTGTTGGTGGAGATAATCTTACATTGCTGGGTAAGCCATTACTCCAgtaggggctgctcagagcatgagtgtggcctagttctccaattggctgca Alignment from Exonerate_protein2genome GTCCTGCTGGTTGGGGCAGACAACTTCACACTCCTGGGCAAGCCACTCCTCCG agtatgatatagtatgttttccggacggtttgtgactttttgttttctagGTCCTGCTTGTTGGTGGAGATAATCTTACATTGCTGGGTAAGCCATTACTCCAgtaggggctgctcagagcatgagtgtggcctagttctccaattggctgca Alignment from Exonerate_coding2genome agtatgatatagtatgttttccggacggtttgtgactttttgttttctaggtcctgcttgttggtggagataatcttacattgctgggtaagccattactccagtaggggctgctcagagcatgagtgtggcctagttctccaattggctgca Alignment from GeneWise GTCCTGCTGGTTGGGGCAGACAACTTCACACTCCTGGGCAAGCCACTCCTCCG agtatgatatagtatgttttccggacggtttgtgactttttgttttctagGTCCTGCTTGTTGGTGGAGATAATCTTACATTGCTGGGTAAGCCATTACTCCAgtaggggctgctcagagcatgagtgtggcctagttctccaattggctgca #### Mrpl43_ID9260_2 --> 1 - 1 Original Alignment gGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACc ggcacaaaacttagaactagcctaatacgtaattttattttcttttgtagaGAGTTAGTTGAACGTGAGGTTACTGACTTTGCCCAATGGAACCCAGGAGTTGTGGTATATGTGAACTCTTGGCCTTGCACCATGCCACGAATGGTGGCAGAATACtgtacagccagctgagtgagggcaggggtatccagtacttaatctattaca Alignment from CESAR gGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACc ggcacaaaacttagaactagcctaatacgtaattttattttcttttgtagaGAGTTAGTTGAACGTGAGGTTACTGACTTTGCCCAATGGAACCCAGGAGTTGTGGTATATGTGAACTCTTGGCCTTGCACCATGCCACGAATGGTGGCAGAATACtgtacagccagctgagtgagggcaggggtatccagtacttaatctattaca Alignment from Spaln_aa2Genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ggcacaaaacttagaactagcctaatacgtaattttattttcttttgtagAGAGTTAGTTGAACGTGAGGTTACTGACTTTGCCCAATGGAACCCAGGAGTTGTGGTATATGTGAACTCTTGGCCTTGCACCATGCCACGAATGGTGGCAGAATACTgtacagccagctgagtgagggcaggggtatccagtacttaatctattaca Alignment from Spaln_nt2Genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ggcacaaaacttagaactagcctaatacgtaattttattttcttttgtagAGAGTTAGTTGAACGTGAGGTTACTGACTTTGCCCAATGGAACCCAGGAGTTGTGGTATATGTGAACTCTTGGCCTTGCACCATGCCACGAATGGTGGCAGAATACTgtacagccagctgagtgagggcaggggtatccagtacttaatctattaca Alignment from Pairagon GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ggcacaaaacttagaactagcctaatacgtaattttattttcttttgtagAGAGTTAGTTGAACGTGAGGTTACTGACTTTGCCCAATGGAACCCAGGAGTTGTGGTATATGTGAACTCTTGGCCTTGCACCATGCCACGAATGGTGGCAGAATACTgtacagccagctgagtgagggcaggggtatccagtacttaatctattaca Alignment from Exonerate_protein2genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ggcacaaaacttagaactagcctaatacgtaattttattttcttttgtagAGAGTTAGTTGAACGTGAGGTTACTGACTTTGCCCAATGGAACCCAGGAGTTGTGGTATATGTGAACTCTTGGCCTTGCACCATGCCACGAATGGTGGCAGAATACTgtacagccagctgagtgagggcaggggtatccagtacttaatctattaca Alignment from Exonerate_coding2genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ggcacaaaacttagaactagcctaatacgtaattttattttcttttgtagAGAGTTAGTTGAACGTGAGGTTACTGACTTTGCCCAATGGAACCCAGGAGTTGTGGTATATGTGAACTCTTGGCCTTGCACCATGCCACGAATGGTGGCAGAATACTgtacagccagctgagtgagggcaggggtatccagtacttaatctattaca Alignment from GeneWise GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ggcacaaaacttagaactagcctaatacgtaattttattttcttttgtagAGAGTTAGTTGAACGTGAGGTTACTGACTTTGCCCAATGGAACCCAGGAGTTGTGGTATATGTGAACTCTTGGCCTTGCACCATGCCACGAATGGTGGCAGAATACTgtacagccagctgagtgagggcaggggtatccagtacttaatctattaca #### Ms4a10_ID3084_3 --> 0 - 0 Original Alignment TTTCTCGTTGCAGGGATGGCGGCCATGACAACAGTGACATTCCCTAAGACCTCTCTG agaactctgtcacttgacagtgtaggaaagaaccatctttgccctgtcagTTTCTTGTTGCAGGGATGGTAGTCATGACTACAGTAACATTCCCCAAGACCTCACTAgtaaaatggtgagcaccaaatggaacaagggactataaatatcgagaagc Alignment from CESAR TTTCTCGTTGCAGGGATGGCGGCCATGACAACAGTGACATTCCCTAAGACCTCTCTG agaactctgtcacttgacagtgtaggaaagaaccatctttgccctgtcagTTTCTTGTTGCAGGGATGGTAGTCATGACTACAGTAACATTCCCCAAGACCTCACTAgtaaaatggtgagcaccaaatggaacaagggactataaatatcgagaagc Alignment from Spaln_aa2Genome TTTCTCGTTGCAGGGATGGCGGCCATGACAACAGTGACATTCCCTAAGACCTCTCTG agaactctgtcacttgacagtgtaggaaagaaccatctttgccctgtcagTTTCTTGTTGCAGGGATGGTAGTCATGACTACAGTAACATTCCCCAAGACCTCACTAgtaaaatggtgagcaccaaatggaacaagggactataaatatcgagaagc Alignment from Spaln_nt2Genome TTTCTCGTTGCAGGGATGGCGGCCATGACAACAGTGACATTCCCTAAGACCTCTCTG agaactctgtcacttgacagtgtaggaaagaaccatctttgccctgtcagTTTCTTGTTGCAGGGATGGTAGTCATGACTACAGTAACATTCCCCAAGACCTCACTAgtaaaatggtgagcaccaaatggaacaagggactataaatatcgagaagc Alignment from Pairagon TTTCTCGTTGCAGGGATGGCGGCCATGACAACAGTGACATTCCCTAAGACCTCTCTG agaactctgtcacttgacagtgtaggaaagaaccatctttgccctgtcagTTTCTTGTTGCAGGGATGGTAGTCATGACTACAGTAACATTCCCCAAGACCTCACTAgtaaaatggtgagcaccaaatggaacaagggactataaatatcgagaagc Alignment from Exonerate_protein2genome TTTCTCGTTGCAGGGATGGCGGCCATGACAACAGTGACATTCCCTAAGACCTCTCTG agaactctgtcacttgacagtgtaggaaagaaccatctttgccctgtcagTTTCTTGTTGCAGGGATGGTAGTCATGACTACAGTAACATTCCCCAAGACCTCACTAgtaaaatggtgagcaccaaatggaacaagggactataaatatcgagaagc Alignment from Exonerate_coding2genome TTTCTCGTTGCAGGGATGGCGGCCATGACAACAGTGACATTCCCTAAGACCTCTCTG agaactctgtcacttgacagtgtaggaaagaaccatctttgccctgtcagTTTCTTGTTGCAGGGATGGTAGTCATGACTACAGTAACATTCCCCAAGACCTCACTAgtaaaatggtgagcaccaaatggaacaagggactataaatatcgagaagc Alignment from GeneWise TTTCTCGTTGCAGGGATGGCGGCCATGACAACAGTGACATTCCCTAAGACCTCTCTG agaactctgtcacttgacagtgtaggaaagaaccatctttgccctgtcagTTTCTTGTTGCAGGGATGGTAGTCATGACTACAGTAACATTCCCCAAGACCTCACTAgtaaaatggtgagcaccaaatggaacaagggactataaatatcgagaagc #### Ms4a15_ID3092_5 --> 0 - 0 Original Alignment TTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCCTTCGCGGGGACAGCCATTCTTCTCATGGACTTTGGTGTCACTAACTGG caagacggagaatgcttggcctcatttattagttttcttttttcctacagTTGAAGAGCAGTCTGGGGACCAATATCCTCAGTGCCATGGCAGTGTTTGCAGGGACAGCGATTCTTCTCATGGACTTTGGTGTTACGAACTGGgtgagtagttggctgtatggttattacctaaaacaaagactgagaccaga Alignment from CESAR TTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCCTTCGCGGGGACAGCCATTCTTCTCATGGACTTTGGTGTCACTAACTGG caagacggagaatgcttggcctcatttattagttttcttttttcctacagTTGAAGAGCAGTCTGGGGACCAATATCCTCAGTGCCATGGCAGTGTTTGCAGGGACAGCGATTCTTCTCATGGACTTTGGTGTTACGAACTGGgtgagtagttggctgtatggttattacctaaaacaaagactgagaccaga Alignment from Spaln_aa2Genome TTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCCTTCGCGGGGACAGCCATTCTTCTCATGGACTTTGGTGTCACTAACTGG caagacggagaatgcttggcctcatttattagttttcttttttcctacagTTGAAGAGCAGTCTGGGGACCAATATCCTCAGTGCCATGGCAGTGTTTGCAGGGACAGCGATTCTTCTCATGGACTTTGGTGTTACGAACTGGgtgagtagttggctgtatggttattacctaaaacaaagactgagaccaga Alignment from Spaln_nt2Genome TTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCCTTCGCGGGGACAGCCATTCTTCTCATGGACTTTGGTGTCACTAACTGG caagacggagaatgcttggcctcatttattagttttcttttttcctacagTTGAAGAGCAGTCTGGGGACCAATATCCTCAGTGCCATGGCAGTGTTTGCAGGGACAGCGATTCTTCTCATGGACTTTGGTGTTACGAACTGGgtgagtagttggctgtatggttattacctaaaacaaagactgagaccaga Alignment from Pairagon TTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCCTTCGCGGGGACAGCCATTCTTCTCATGGACTTTGGTGTCACTAACTGG caagacggagaatgcttggcctcatttattagttttcttttttcctacagTTGAAGAGCAGTCTGGGGACCAATATCCTCAGTGCCATGGCAGTGTTTGCAGGGACAGCGATTCTTCTCATGGACTTTGGTGTTACGAACTGGgtgagtagttggctgtatggttattacctaaaacaaagactgagaccaga Alignment from Exonerate_protein2genome TTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCCTTCGCGGGGACAGCCATTCTTCTCATGGACTTTGGTGTCACTAACTGG caagacggagaatgcttggcctcatttattagttttcttttttcctacagTTGAAGAGCAGTCTGGGGACCAATATCCTCAGTGCCATGGCAGTGTTTGCAGGGACAGCGATTCTTCTCATGGACTTTGGTGTTACGAACTGGgtgagtagttggctgtatggttattacctaaaacaaagactgagaccaga Alignment from Exonerate_coding2genome TTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCCTTCGCGGGGACAGCCATTCTTCTCATGGACTTTGGTGTCACTAACTGG caagacggagaatgcttggcctcatttattagttttcttttttcctacagTTGAAGAGCAGTCTGGGGACCAATATCCTCAGTGCCATGGCAGTGTTTGCAGGGACAGCGATTCTTCTCATGGACTTTGGTGTTACGAACTGGgtgagtagttggctgtatggttattacctaaaacaaagactgagaccaga Alignment from GeneWise TTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCCTTCGCGGGGACAGCCATTCTTCTCATGGACTTTGGTGTCACTAACTGG caagacggagaatgcttggcctcatttattagttttcttttttcctacagTTGAAGAGCAGTCTGGGGACCAATATCCTCAGTGCCATGGCAGTGTTTGCAGGGACAGCGATTCTTCTCATGGACTTTGGTGTTACGAACTGGgtgagtagttggctgtatggttattacctaaaacaaagactgagaccaga #### Ms4a18_ID3101_4 --> 0 - 0 Original Alignment GTGAATAGCAGCATTGGCATGAATGTTGTCAGTTCCATCTTCTCCTTGACTGGTATCATCATTATCATCGTACAGTTGTCTATTTACCCCAGTGAGATTAGTCCTCTGATG ctatgcgagggctggaatgcgacaaacctcactgacgcccctccccgcagGTGAATAGTAGCATTGGTATGAATGTAGTC---TCCATCTTCTCACTGACAAGAATTATCATC---ATCATA---TTGTCCATTTACCCAAGTGAAATTAGTCCTTTGATGgtaggtctaaacctgggagatttcagactcctctagaggctgaccaccac Alignment from CESAR GTGAATAGCAGCATTGGCATGAATGTTGTCAGTTCCATCTTCTCCTTGACTGGTATCATCATTATCATCGTACAGTTGTCTATTTACCCCAGTGAGATTAGTCCTCTGATG ctatgcgagggctggaatgcgacaaacctcactgacgcccctccccgcagGTGAATAGTAGCATTGGTATGAATGTAGTC---TCCATCTTCTCACTGACAAGAATTATCATCATCATA------TTGTCCATTTACCCAAGTGAAATTAGTCCTTTGATGgtaggtctaaacctgggagatttcagactcctctagaggctgaccaccac Alignment from Spaln_aa2Genome GTGAATAGCAGCATTGGCATGAATGTTGTCAGTTCCATCTTCTCCTTGACTGGTATCATCATTATCATCGTACAGTTGTCTATTTACCCCAGTGAGATTAGTCCTCTGATG ctatgcgagggctggaatgcgacaaacctcactgacgcccctccccgcagGTGAATAGTAGCATTGGTATGAATGTAGTC---TCCATCTTCTCACTGACAAGAATTATCATCATCATATTGTCCATTTACCCAAGTGAAATTAGTCCTTTGATG gtaggtctaaacctgggagatttcagactcctctagaggctgac Alignment from Spaln_nt2Genome GTGAATAGCAGCATTGGCATGAATGTTGTCAGTTCCATCTTCTCCTTGACTGGTATCATCATTATCATCGTACAGTTGTCTATTTACCCCAGTGAGATTAGTCCTCTGATG ctatgcgagggctggaatgcgacaaacctcactgacgcccctccccgcagGTGAATAGTAGCATTGGTATGAATGTAGTC---TCCATCTTCTCACTGAC------AAGAATTATCATCATCATATTGTCCATTTACCCAAGTGAAATTAGTCCTTTGATGgtaggtctaaacctgggagatttcagactcctctagaggctgaccaccac Alignment from Pairagon GTGAATAGCAGCATTGGCATGAATGTTGTCAGTTCCATCTTCTCCTTGACTGGTATCATCATTATCATCGTACAGTTGTCTATTTACCCCAGTGAGATTAGTCCTCTGATG ctatgcgagggctggaatgcgacaaacctcactgacgcccctccccgcagGTGAATAGTAGCATTGGTATGAATGTAGTC---TCCATCTTCTCACTGACAAGAATTATCATCATCAT------ATTGTCCATTTACCCAAGTGAAATTAGTCCTTTGATGgtaggtctaaacctgggagatttcagactcctctagaggctgaccaccac Alignment from Exonerate_protein2genome GTGAATAGCAGCATTGGCATGAATGTTGTCAGTTCCATCTTCTCCTTGACTGGTATCATCATTATCATCGTACAGTTGTCTATTTACCCCAGTGAGATTAGTCCTCTGATG ctatgcgagggctggaatgcgacaaacctcactgacgcccctccccgcagGTGAATAGTAGCATTGGTATGAATGTAGTC---TCCATCTTCTCACTGACAAGAATTATCATCATCATA------TTGTCCATTTACCCAAGTGAAATTAGTCCTTTGATGgtaggtctaaacctgggagatttcagactcctctagaggctgaccaccac Alignment from Exonerate_coding2genome ctatgcgagggctggaatgcgacaaacctcactgacgcccctccccgcaggtgaatagtagcattggtatgaatgtagtctccatcttctcactgacaagaattatcatcatcatattgtccatttacccaagtgaaattagtcctttgatggtaggtctaaacctgggagatttcagactcctctagaggctgaccaccac Alignment from GeneWise GTGAATAGCAGCATTGGCATGAATGTTGTCAGTTCCATCTTCTCCTTGACTGGTATCATCATTATCATCGTACAGTTGTCTATTTACCCCAGTGAGATTAGTCCTCTGATG ctatgcgagggctggaatgcgacaaacctcactgacgcccctccccgcagGTGAATAGTAGCATTGGTATGAATGTAGTCTCC---ATCTTCTCACTGACAAGAATTATCATCATCATA------TTGTCCATTTACCCAAGTGAAATTAGTCCTTTGATGgtaggtctaaacctgggagatttcagactcctctagaggctgaccaccac #### Ms4a2_ID3242_3 --> 0 - 0 Original Alignment GCAACACAAATTCTGGTTGGTTTGATATGCCTTTGTTTTGGAACAATTGTCTGCTCCGTACTCTATGTTTCAGACTTTGATGAAGAAGTGCTTTTACTTTATAAACTAGGCTATCCATTCTGGGGTGCAGTGCTG attttcatattttcatgaattggcaccctgatttggggctggtcccacagGCAACGCAAATTTTGGTTGGTCTGATT------TGTTTTGGAACAATTGTCTGCTCCGTCATTTATGTTTCAGACTGTGATGAGGAGATCCTTTCACTCTACAAGCTTGTTTATCCATTCTGGGGCGCAGTCCTAgtaacgatacactcccaattaactgtattgactgttgtttcctgaatgag Alignment from CESAR GCAACACAAATTCTGGTTGGTTTGATATGCCTTTGTTTTGGAACAATTGTCTGCTCCGTACTCTATGTTTCAGACTTTGATGAAGAAGTGCTTTTACTTTATAAACTAGGCTATCCATTCTGGGGTGCAGTGCTG attttcatattttcatgaattggcaccctgatttggggctggtcccacagGCAACGCAAATTTTGGTTGGTCTGATT------TGTTTTGGAACAATTGTCTGCTCCGTCATTTATGTTTCAGACTGTGATGAGGAGATCCTTTCACTCTACAAGCTTGTTTATCCATTCTGGGGCGCAGTCCTAgtaacgatacactcccaattaactgtattgactgttgtttcctgaatgag Alignment from Spaln_aa2Genome GCAACACAAATTCTGGTTGGTTTGATATGCCTTTGTTTTGGAACAATTGTCTGCTCCGTACTCTATGTTTCAGACTTTGATGAAGAAGTGCTTTTACTTTATAAACTAGGCTATCCATTCTGGGGTGCAGTGCTG attttcatattttcatgaattggcaccctgatttggggctggtcccacagGCAACGCAAATTTTGGTTGGTCTGATT------TGTTTTGGAACAATTGTCTGCTCCGTCATTTATGTTTCAGACTGTGATGAGGAGATCCTTTCACTCTACAAGCTTGTTTATCCATTCTGGGGCGCAGTCCTAgtaacgatacactcccaattaactgtattgactgttgtttcctgaatgag Alignment from Spaln_nt2Genome GCAACACAAATTCTGGTTGGTTTGATATGCCTTTGTTTTGGAACAATTGTCTGCTCCGTACTCTATGTTTCAGACTTTGATGAAGAAGTGCTTTTACTTTATAAACTAGGCTATCCATTCTGGGGTGCAGTGCTG attttcatattttcatgaattggcaccctgatttggggctggtcccacagGCAACGCAAATTTTGGTTGGTCTGA------TTTGTTTTGGAACAATTGTCTGCTCCGTCATTTATGTTTCAGACTGTGATGAGGAGATCCTTTCACTCTACAAGCTTGTTTATCCATTCTGGGGCGCAGTCCTAgtaacgatacactcccaattaactgtattgactgttgtttcctgaatgag Alignment from Pairagon GCAACACAAATTCTGGTTGGTTTGATATGCCTTTGTTTTGGAACAATTGTCTGCTCCGTACTCTATGTTTCAGACTTTGATGAAGAAGTGCTTTTACTTTATAAACTAGGCTATCCATTCTGGGGTGCAGTGCTG attttcatattttcatgaattggcaccctgatttggggctggtcccacagGCAACGCAAATTTTGGTTGGTCTGAT------TTGTTTTGGAACAATTGTCTGCTCCGTCATTTATGTTTCAGACTGTGATGAGGAGATCCTTTCACTCTACAAGCTTGTTTATCCATTCTGGGGCGCAGTCCTAgtaacgatacactcccaattaactgtattgactgttgtttcctgaatgag Alignment from Exonerate_protein2genome GCAACACAAATTCTGGTTGGTTTGATATGCCTTTGTTTTGGAACAATTGTCTGCTCCGTACTCTATGTTTCAGACTTTGATGAAGAAGTGCTTTTACTTTATAAACTAGGCTATCCATTCTGGGGTGCAGTGCTG attttcatattttcatgaattggcaccctgatttggggctggtcccacagGCAACGCAAATTTTGGTTGGTCTGATT------TGTTTTGGAACAATTGTCTGCTCCGTCATTTATGTTTCAGACTGTGATGAGGAGATCCTTTCACTCTACAAGCTTGTTTATCCATTCTGGGGCGCAGTCCTAgtaacgatacactcccaattaactgtattgactgttgtttcctgaatgag Alignment from Exonerate_coding2genome GCAACACAAATTCTGGTTGGTTTGATATGCCTTTGTTTTGGAACAATTGTCTGCTCCGTACTCTATGTTTCAGACTTTGATGAAGAAGTGCTTTTACTTTATAAACTAGGCTATCCATTCTGGGGTGCAGTGCTGTTTGTTTTGTCTGGATTTTTGTCAATT attttcatattttcatgaattggcaccctgatttggggctggtcccacagGCAACGCAAATTTTGGTTGGTCTGATT------TGTTTTGGAACAATTGTCTGCTCCGTCATTTATGTTTCAGACTGTGATGAGGAGATCCTTTCACTCTACAAGCTTGTTTATCCATTCTGGGGCGCAGTCCTAGTAACGATACACTCCCAATTAACTGTAttgactgttgtttcctgaatgag Alignment from GeneWise GCAACACAAATTCTGGTTGGTTTGATATGCCTTTGTTTTGGAACAATTGTCTGCTCCGTACTCTATGTTTCAGACTTTGATGAAGAAGTGCTTTTACTTTATAAACTAGGCTATCCATTCTGGGGTGCAGTGCTG attttcatattttcatgaattggcaccctgatttggggctggtcccacagGCAACGCAAATTTTGGTTGGTCTGATTTGT------TTTGGAACAATTGTCTGCTCCGTCATTTATGTTTCAGACTGTGATGAGGAGATCCTTTCACTCTACAAGCTTGTTTATCCATTCTGGGGCGCAGTCCTAgtaacgatacactcccaattaactgtattgactgttgtttcctgaatgag #### Ms4a4b_ID3188_2 --> 0 - 0 Original Alignment GTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTACCCACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCAATAATG gctagtgtgtagagggtgtcttaatcaaattggtaattcctgattctcagGTCTTACAAGTTATGATTGCTATAATTAACCTCAGCTTAGGTATACTAATTTTGACAACATTATGCTCTGAACTACCAACTTCTATCATGCTAATGGTACCAATCTGGGGATCTATAATGgtgaggatgctgttgatccaatattgaggttaccataaccttatcagatg Alignment from CESAR GTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTACCCACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCAATAATG gctagtgtgtagagggtgtcttaatcaaattggtaattcctgattctcagGTCTTACAAGTTATGATTGCTATAATTAACCTCAGCTTAGGTATACTAATTTTGACAACATTATGCTCTGAACTACCAACTTCTATCATGCTAATGGTACCAATCTGGGGATCTATAATGgtgaggatgctgttgatccaatattgaggttaccataaccttatcagatg Alignment from Spaln_aa2Genome GTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTACCCACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCAATAATG gctagtgtgtagagggtgtcttaatcaaattggtaattcctgattctcagGTCTTACAAGTTATGATTGCTATAATTAACCTCAGCTTAGGTATACTAATTTTGACAACATTATGCTCTGAACTACCAACTTCTATCATGCTAATGGTACCAATCTGGGGATCTATAATGgtgaggatgctgttgatccaatattgaggttaccataaccttatcagatg Alignment from Spaln_nt2Genome GTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTACCCACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCAATAATG gctagtgtgtagagggtgtcttaatcaaattggtaattcctgattctcagGTCTTACAAGTTATGATTGCTATAATTAACCTCAGCTTAGGTATACTAATTTTGACAACATTATGCTCTGAACTACCAACTTCTATCATGCTAATGGTACCAATCTGGGGATCTATAATGgtgaggatgctgttgatccaatattgaggttaccataaccttatcagatg Alignment from Pairagon GTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTACCCACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCAATAATG gctagtgtgtagagggtgtcttaatcaaattggtaattcctgattctcagGTCTTACAAGTTATGATTGCTATAATTAACCTCAGCTTAGGTATACTAATTTTGACAACATTATGCTCTGAACTACCAACTTCTATCATGCTAATGGTACCAATCTGGGGATCTATAATGgtgaggatgctgttgatccaatattgaggttaccataaccttatcagatg Alignment from Exonerate_protein2genome GTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTACCCACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCAATAATG gctagtgtgtagagggtgtcttaatcaaattggtaattcctgattctcagGTCTTACAAGTTATGATTGCTATAATTAACCTCAGCTTAGGTATACTAATTTTGACAACATTATGCTCTGAACTACCAACTTCTATCATGCTAATGGTACCAATCTGGGGATCTATAATGgtgaggatgctgttgatccaatattgaggttaccataaccttatcagatg Alignment from Exonerate_coding2genome GTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTACCCACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCAATAATG gctagtgtgtagagggtgtcttaatcaaattggtaattcctgattctcagGTCTTACAAGTTATGATTGCTATAATTAACCTCAGCTTAGGTATACTAATTTTGACAACATTATGCTCTGAACTACCAACTTCTATCATGCTAATGGTACCAATCTGGGGATCTATAATGgtgaggatgctgttgatccaatattgaggttaccataaccttatcagatg Alignment from GeneWise GTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTACCCACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCAATAATG gctagtgtgtagagggtgtcttaatcaaattggtaattcctgattctcagGTCTTACAAGTTATGATTGCTATAATTAACCTCAGCTTAGGTATACTAATTTTGACAACATTATGCTCTGAACTACCAACTTCTATCATGCTAATGGTACCAATCTGGGGATCTATAATGgtgaggatgctgttgatccaatattgaggttaccataaccttatcagatg #### Ms4a4b_ID3189_3 --> 0 - 0 Original Alignment TTCATTGTCTCCGGATCCCTGTCCATTGCAGCAGGAGTGACACCTACAAAATGCCTG gagtcaagacccatcagtgtgccgtatttttgttttacctgcaaaagtagTTTATTGTATGT---GCCCTATCTATTACAGTTGGTGTGACGTTGACAAAATGCCTAgtgagtgcgcttctcccagatatgattctgtgtcgtgcctgctagcacca Alignment from CESAR TTCATTGTCTCCGGATCCCTGTCCATTGCAGCAGGAGTGACACCTACAAAATGCCTG gagtcaagacccatcagtgtgccgtatttttgttttacctgcaaaagtagTTTATTGTATGT---GCCCTATCTATTACAGTTGGTGTGACGTTGACAAAATGCCTAgtgagtgcgcttctcccagatatgattctgtgtcgtgcctgctagcacca Alignment from Spaln_aa2Genome TTCATTGTCTCCGGATCCCTGTCCATTGCAGCAGGAGTGACACCTACAAAATGCCTG gagtcaagacccatcagtgtgccgtatttttgttttacctgcaaaagtagTTTATTGTATGT---GCCCTATCTATTACAGTTGGTGTGACGTTGACAAAATGCCTAgtgagtgcgcttctcccagatatgattctgtgtcgtgcctgctagcacca Alignment from Spaln_nt2Genome TTCATTGTCTCCGGATCCCTGTCCATTGCAGCAGGAGTGACACCTACAAAATGCCTG gagtcaagacccatcagtgtgccgtatttttgttttacctgcaaaagtagTTTATTGTAT---GTGCCCTATCTATTACAGTTGGTGTGACGTTGACAAAATGCCTAgtgagtgcgcttctcccagatatgattctgtgtcgtgcctgctagcacca Alignment from Pairagon TTCATTGTCTCCGGATCCCTGTCCATTGCAGCAGGAGTGACACCTACAAAATGCCTG gagtcaagacccatcagtgtgccgtatttttgttttacctgcaaaagtagtttattgtatgtgccctatctattacagTT-------------------------------GGTGTGACGTTGACAAAATGCCTAgtgagtgcgcttctcccagatatgattctgtgtcgtgcctgctagcacca Alignment from Exonerate_protein2genome gagtcaagacccatcagtgtgccgtatttttgttttacctgcaaaagtagtttattgtatgtgccctatctattacagttggtgtgacgttgacaaaatgcctagtgagtgcgcttctcccagatatgattctgtgtcgtgcctgctagcacca Alignment from Exonerate_coding2genome gagtcaagacccatcagtgtgccgtatttttgttttacctgcaaaagtagtttattgtatgtgccctatctattacagttggtgtgacgttgacaaaatgcctagtgagtgcgcttctcccagatatgattctgtgtcgtgcctgctagcacca Alignment from GeneWise TTCATTGTCTCCGGATCCCTGTCCATTGCAGCAGGAGTGACACCTACAAAATGCCTG gagtcaagacccatcagtgtgccgtatttttgttttacctgcaaaagtagTTTATTGTATGT---GCCCTATCTATTACAGTTGGTGTGACGTTGACAAAATGCCTAgtgagtgcgcttctcccagatatgattctgtgtcgtgcctgctagcacca #### Ms4a4c_ID3180_3 --> 0 - 0 Original Alignment TTCATTGTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAAGCCTG aagctgactgctcggagaccatgaacacaaagttactttctcttcctcagTTCATTGTTGCAGGGTTCCTTTCAATTGCAGCAGGAGTGAGGCCTACAAAAAGCCTAgtatggttacaatcctaccaggttggcaccctattactacacgaatatga Alignment from CESAR TTCATTGTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAAGCCTG aagctgactgctcggagaccatgaacacaaagttactttctcttcctcagTTCATTGTTGCAGGGTTCCTTTCAATTGCAGCAGGAGTGAGGCCTACAAAAAGCCTAgtatggttacaatcctaccaggttggcaccctattactacacgaatatga Alignment from Spaln_aa2Genome TTCATTGTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAAGCCTG aagctgactgctcggagaccatgaacacaaagttactttctcttcctcagTTCATTGTTGCAGGGTTCCTTTCAATTGCAGCAGGAGTGAGGCCTACAAAAAGCCTAgtatggttacaatcctaccaggttggcaccctattactacacgaatatga Alignment from Spaln_nt2Genome TTCATTGTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAAGCCTG aagctgactgctcggagaccatgaacacaaagttactttctcttcctcagTTCATTGTTGCAGGGTTCCTTTCAATTGCAGCAGGAGTGAGGCCTACAAAAAGCCTAgtatggttacaatcctaccaggttggcaccctattactacacgaatatga Alignment from Pairagon TTCATTGTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAAGCCTG aagctgactgctcggagaccatgaacacaaagttactttctcttcctcagTTCATTGTTGCAGGGTTCCTTTCAATTGCAGCAGGAGTGAGGCCTACAAAAAGCCTAgtatggttacaatcctaccaggttggcaccctattactacacgaatatga Alignment from Exonerate_protein2genome TTCATTGTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAAGCCTG aagctgactgctcggagaccatgaacacaaagttactttctcttcctcagTTCATTGTTGCAGGGTTCCTTTCAATTGCAGCAGGAGTGAGGCCTACAAAAAGCCTAgtatggttacaatcctaccaggttggcaccctattactacacgaatatga Alignment from Exonerate_coding2genome TTCATTGTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAAGCCTG aagctgactgctcggagaccatgaacacaaagttactttctcttcctcagTTCATTGTTGCAGGGTTCCTTTCAATTGCAGCAGGAGTGAGGCCTACAAAAAGCCTAgtatggttacaatcctaccaggttggcaccctattactacacgaatatga Alignment from GeneWise TTCATTGTCTCAGGATCCCTGTCAATTGCAGCAGGAGTGAAACCTACAAAAAGCCTG aagctgactgctcggagaccatgaacacaaagttactttctcttcctcagTTCATTGTTGCAGGGTTCCTTTCAATTGCAGCAGGAGTGAGGCCTACAAAAAGCCTAgtatggttacaatcctaccaggttggcaccctattactacacgaatatga #### Ms4a4d_ID3224_4 --> 0 - 0 Original Alignment ATCATCAGCAGTCTAAGTGTGAACACTATCAGTTCTGTGTTGGCTGTGGCAGCAAGCATTATTGGCGTCATCAGTGTGATTTCTGGTGTTTTTCGCCAATTTAGAAGTCAACCAGCCATCGCT actacaacaggtcttgtatattatagaaaatcttttcctttcccttgcagATCATCAGCAGCCTAAGTGTGAACACTATAAGTTCTGTGCTCGCTGTGACAGCCAGCATTCTTGGCATTATTAGTGTGATATCAGGTGTTTTCCATCAGTTTAGCAGTCAACCTGCTATCACTgtaagttaattccattttttatgactgtggtatatcatgtcaaagatgaa Alignment from CESAR ATCATCAGCAGTCTAAGTGTGAACACTATCAGTTCTGTGTTGGCTGTGGCAGCAAGCATTATTGGCGTCATCAGTGTGATTTCTGGTGTTTTTCGCCAATTTAGAAGTCAACCAGCCATCGCT actacaacaggtcttgtatattatagaaaatcttttcctttcccttgcagATCATCAGCAGCCTAAGTGTGAACACTATAAGTTCTGTGCTCGCTGTGACAGCCAGCATTCTTGGCATTATTAGTGTGATATCAGGTGTTTTCCATCAGTTTAGCAGTCAACCTGCTATCACTgtaagttaattccattttttatgactgtggtatatcatgtcaaagatgaa Alignment from Spaln_aa2Genome ATCATCAGCAGTCTAAGTGTGAACACTATCAGTTCTGTGTTGGCTGTGGCAGCAAGCATTATTGGCGTCATCAGTGTGATTTCTGGTGTTTTTCGCCAATTTAGAAGTCAACCAGCCATCGCT actacaacaggtcttgtatattatagaaaatcttttcctttcccttgcagATCATCAGCAGCCTAAGTGTGAACACTATAAGTTCTGTGCTCGCTGTGACAGCCAGCATTCTTGGCATTATTAGTGTGATATCAGGTGTTTTCCATCAGTTTAGCAGTCAACCTGCTATCACTgtaagttaattccattttttatgactgtggtatatcatgtcaaagatgaa Alignment from Spaln_nt2Genome ATCATCAGCAGTCTAAGTGTGAACACTATCAGTTCTGTGTTGGCTGTGGCAGCAAGCATTATTGGCGTCATCAGTGTGATTTCTGGTGTTTTTCGCCAATTTAGAAGTCAACCAGCCATCGCT actacaacaggtcttgtatattatagaaaatcttttcctttcccttgcagATCATCAGCAGCCTAAGTGTGAACACTATAAGTTCTGTGCTCGCTGTGACAGCCAGCATTCTTGGCATTATTAGTGTGATATCAGGTGTTTTCCATCAGTTTAGCAGTCAACCTGCTATCACTgtaagttaattccattttttatgactgtggtatatcatgtcaaagatgaa Alignment from Pairagon ATCATCAGCAGTCTAAGTGTGAACACTATCAGTTCTGTGTTGGCTGTGGCAGCAAGCATTATTGGCGTCATCAGTGTGATTTCTGGTGTTTTTCGCCAATTTAGAAGTCAACCAGCCATCGCT actacaacaggtcttgtatattatagaaaatcttttcctttcccttgcagATCATCAGCAGCCTAAGTGTGAACACTATAAGTTCTGTGCTCGCTGTGACAGCCAGCATTCTTGGCATTATTAGTGTGATATCAGGTGTTTTCCATCAGTTTAGCAGTCAACCTGCTATCACTgtaagttaattccattttttatgactgtggtatatcatgtcaaagatgaa Alignment from Exonerate_protein2genome ATCATCAGCAGTCTAAGTGTGAACACTATCAGTTCTGTGTTGGCTGTGGCAGCAAGCATTATTGGCGTCATCAGTGTGATTTCTGGTGTTTTTCGCCAATTTAGAAGTCAACCAGCCATCGCT actacaacaggtcttgtatattatagaaaatcttttcctttcccttgcagATCATCAGCAGCCTAAGTGTGAACACTATAAGTTCTGTGCTCGCTGTGACAGCCAGCATTCTTGGCATTATTAGTGTGATATCAGGTGTTTTCCATCAGTTTAGCAGTCAACCTGCTATCACTgtaagttaattccattttttatgactgtggtatatcatgtcaaagatgaa Alignment from Exonerate_coding2genome ATCATCAGCAGTCTAAGTGTGAACACTATCAGTTCTGTGTTGGCTGTGGCAGCAAGCATTATTGGCGTCATCAGTGTGATTTCTGGTGTTTTTCGCCAATTTAGAAGTCAACCAGCCATCGCT actacaacaggtcttgtatattatagaaaatcttttcctttcccttgcagATCATCAGCAGCCTAAGTGTGAACACTATAAGTTCTGTGCTCGCTGTGACAGCCAGCATTCTTGGCATTATTAGTGTGATATCAGGTGTTTTCCATCAGTTTAGCAGTCAACCTGCTATCACTgtaagttaattccattttttatgactgtggtatatcatgtcaaagatgaa Alignment from GeneWise ATCATCAGCAGTCTAAGTGTGAACACTATCAGTTCTGTGTTGGCTGTGGCAGCAAGCATTATTGGCGTCATCAGTGTGATTTCTGGTGTTTTTCGCCAATTTAGAAGTCAACCAGCCATCGCT actacaacaggtcttgtatattatagaaaatcttttcctttcccttgcagATCATCAGCAGCCTAAGTGTGAACACTATAAGTTCTGTGCTCGCTGTGACAGCCAGCATTCTTGGCATTATTAGTGTGATATCAGGTGTTTTCCATCAGTTTAGCAGTCAACCTGCTATCACTgtaagttaattccattttttatgactgtggtatatcatgtcaaagatgaa #### Ms4a5_ID3163_2 --> 0 - 0 Original Alignment ACCACCCAGATCCTGTTTGGAATCATGAACTTTTCATTTGGAGTCATTTTCCTTTTCACCTTGGTAAACCCATACCCAAGGTTTCCTTTTATATTTATCTCAGGATATCCTTTCTGGGGCTCTGTTTTG ctagtgcatacaaatctttttgactactgctgcccctttaattcccacagACTACCCAGATTGTGTTTGGAGTCACAAATTTTGCATTTGGGGCAATTTTCCTGTTCACGTTAATGAACCCTTATCCAAGGTTTGCTCTTCGATATACATCAGGATATCCCTTCTGGGACTCTATTGTGgtacgccagtatcagttgaacatagggcaaggttctggtgagtggaagag Alignment from CESAR ACCACCCAGATCCTGTTTGGAATCATGAACTTTTCATTTGGAGTCATTTTCCTTTTCACCTTGGTAAACCCATACCCAAGGTTTCCTTTTATATTTATCTCAGGATATCCTTTCTGGGGCTCTGTTTTG ctagtgcatacaaatctttttgactactgctgcccctttaattcccacagACTACCCAGATTGTGTTTGGAGTCACAAATTTTGCATTTGGGGCAATTTTCCTGTTCACGTTAATGAACCCTTATCCAAGGTTTGCTCTTCGATATACATCAGGATATCCCTTCTGGGACTCTATTGTGgtacgccagtatcagttgaacatagggcaaggttctggtgagtggaagag Alignment from Spaln_aa2Genome ACCACCCAGATCCTGTTTGGAATCATGAACTTTTCATTTGGAGTCATTTTCCTTTTCACCTTGGTAAACCCATACCCAAGGTTTCCTTTTATATTTATCTCAGGATATCCTTTCTGGGGCTCTGTTTTG ctagtgcatacaaatctttttgactactgctgcccctttaattcccacagACTACCCAGATTGTGTTTGGAGTCACAAATTTTGCATTTGGGGCAATTTTCCTGTTCACGTTAATGAACCCTTATCCAAGGTTTGCTCTTCGATATACATCAGGATATCCCTTCTGGGACTCTATTGTGgtacgccagtatcagttgaacatagggcaaggttctggtgagtggaagag Alignment from Spaln_nt2Genome ACCACCCAGATCCTGTTTGGAATCATGAACTTTTCATTTGGAGTCATTTTCCTTTTCACCTTGGTAAACCCATACCCAAGGTTTCCTTTTATATTTATCTCAGGATATCCTTTCTGGGGCTCTGTTTTG ctagtgcatacaaatctttttgactactgctgcccctttaattcccacagACTACCCAGATTGTGTTTGGAGTCACAAATTTTGCATTTGGGGCAATTTTCCTGTTCACGTTAATGAACCCTTATCCAAGGTTTGCTCTTCGATATACATCAGGATATCCCTTCTGGGACTCTATTGTGgtacgccagtatcagttgaacatagggcaaggttctggtgagtggaagag Alignment from Pairagon ACCACCCAGATCCTGTTTGGAATCATGAACTTTTCATTTGGAGTCATTTTCCTTTTCACCTTGGTAAACCCATACCCAAGGTTTCCTTTTATATTTATCTCAGGATATCCTTTCTGGGGCTCTGTTTTG ctagtgcatacaaatctttttgactactgctgcccctttaattcccacagACTACCCAGATTGTGTTTGGAGTCACAAATTTTGCATTTGGGGCAATTTTCCTGTTCACGTTAATGAACCCTTATCCAAGGTTTGCTCTTCGATATACATCAGGATATCCCTTCTGGGACTCTATTGTGgtacgccagtatcagttgaacatagggcaaggttctggtgagtggaagag Alignment from Exonerate_protein2genome ACCACCCAGATCCTGTTTGGAATCATGAACTTTTCATTTGGAGTCATTTTCCTTTTCACCTTGGTAAACCCATACCCAAGGTTTCCTTTTATATTTATCTCAGGATATCCTTTCTGGGGCTCTGTTTTG ctagtgcatacaaatctttttgactactgctgcccctttaattcccacagACTACCCAGATTGTGTTTGGAGTCACAAATTTTGCATTTGGGGCAATTTTCCTGTTCACGTTAATGAACCCTTATCCAAGGTTTGCTCTTCGATATACATCAGGATATCCCTTCTGGGACTCTATTGTGgtacgccagtatcagttgaacatagggcaaggttctggtgagtggaagag Alignment from Exonerate_coding2genome ACCACCCAGATCCTGTTTGGAATCATGAACTTTTCATTTGGAGTCATTTTCCTTTTCACCTTGGTAAACCCATACCCAAGGTTTCCTTTTATATTTATCTCAGGATATCCTTTCTGGGGCTCTGTTTTG ctagtgcatacaaatctttttgactactgctgcccctttaattcccacagACTACCCAGATTGTGTTTGGAGTCACAAATTTTGCATTTGGGGCAATTTTCCTGTTCACGTTAATGAACCCTTATCCAAGGTTTGCTCTTCGATATACATCAGGATATCCCTTCTGGGACTCTATTGTGgtacgccagtatcagttgaacatagggcaaggttctggtgagtggaagag Alignment from GeneWise ACCACCCAGATCCTGTTTGGAATCATGAACTTTTCATTTGGAGTCATTTTCCTTTTCACCTTGGTAAACCCATACCCAAGGTTTCCTTTTATATTTATCTCAGGATATCCTTTCTGGGGCTCTGTTTTG ctagtgcatacaaatctttttgactactgctgcccctttaattcccacagACTACCCAGATTGTGTTTGGAGTCACAAATTTTGCATTTGGGGCAATTTTCCTGTTCACGTTAATGAACCCTTATCCAAGGTTTGCTCTTCGATATACATCAGGATATCCCTTCTGGGACTCTATTGTGgtacgccagtatcagttgaacatagggcaaggttctggtgagtggaagag #### Ms4a6c_ID3198_3 --> 0 - 0 Original Alignment TTTATTGCCTCTGGAATTTTGTCCATCATTACGGAGAGAAAGTCAACAAAACCTTTG ggagaaattgcactagaggactgatctccttctctttgtttcctttatagTTTACTGCCTCTGGAATTTTATCCATCATTACAGAAAGGAAGTCCCGAAAACCTCTGgtgactccagaactgcccttctggaaccaatgaagtcttcaggcttaagc Alignment from CESAR TTTATTGCCTCTGGAATTTTGTCCATCATTACGGAGAGAAAGTCAACAAAACCTTTG ggagaaattgcactagaggactgatctccttctctttgtttcctttatagTTTACTGCCTCTGGAATTTTATCCATCATTACAGAAAGGAAGTCCCGAAAACCTCTGgtgactccagaactgcccttctggaaccaatgaagtcttcaggcttaagc Alignment from Spaln_aa2Genome TTTATTGCCTCTGGAATTTTGTCCATCATTACGGAGAGAAAGTCAACAAAACCTTTG ggagaaattgcactagaggactgatctccttctctttgtttcctttatagTTTACTGCCTCTGGAATTTTATCCATCATTACAGAAAGGAAGTCCCGAAAACCTCTGgtgactccagaactgcccttctggaaccaatgaagtcttcaggcttaagc Alignment from Spaln_nt2Genome TTTATTGCCTCTGGAATTTTGTCCATCATTACGGAGAGAAAGTCAACAAAACCTTTG ggagaaattgcactagaggactgatctccttctctttgtttcctttatagTTTACTGCCTCTGGAATTTTATCCATCATTACAGAAAGGAAGTCCCGAAAACCTCTGgtgactccagaactgcccttctggaaccaatgaagtcttcaggcttaagc Alignment from Pairagon TTTATTGCCTCTGGAATTTTGTCCATCATTACGGAGAGAAAGTCAACAAAACCTTTG ggagaaattgcactagaggactgatctccttctctttgtttcctttatagTTTACTGCCTCTGGAATTTTATCCATCATTACAGAAAGGAAGTCCCGAAAACCTCTGgtgactccagaactgcccttctggaaccaatgaagtcttcaggcttaagc Alignment from Exonerate_protein2genome TTTATTGCCTCTGGAATTTTGTCCATCATTACGGAGAGAAAGTCAACAAAACCTTTG ggagaaattgcactagaggactgatctccttctctttgtttcctttatagTTTACTGCCTCTGGAATTTTATCCATCATTACAGAAAGGAAGTCCCGAAAACCTCTGgtgactccagaactgcccttctggaaccaatgaagtcttcaggcttaagc Alignment from Exonerate_coding2genome TTTATTGCCTCTGGAATTTTGTCCATCATTACGGAGAGAAAGTCAACAAAACCTTTG ggagaaattgcactagaggactgatctccttctctttgtttcctttatagTTTACTGCCTCTGGAATTTTATCCATCATTACAGAAAGGAAGTCCCGAAAACCTCTGgtgactccagaactgcccttctggaaccaatgaagtcttcaggcttaagc Alignment from GeneWise TTTATTGCCTCTGGAATTTTGTCCATCATTACGGAGAGAAAGTCAACAAAACCTTTG ggagaaattgcactagaggactgatctccttctctttgtttcctttatagTTTACTGCCTCTGGAATTTTATCCATCATTACAGAAAGGAAGTCCCGAAAACCTCTGgtgactccagaactgcccttctggaaccaatgaagtcttcaggcttaagc #### Ms4a6d_ID3231_4 --> 0 - 0 Original Alignment GTTCACAGCAGCCTAGCCCTGAGCATCCTGAGTGTCCTCTCTGCTCTTACAGGCATCGCTATTCTCTCTGTCAGTTTGGCTGCTTTAGAGCCTGCCTTGCAGCAATGTAAGCTGGCTTTCACACAACTAGACACAACCCAAGATGCTTATCATTTCTTTAGCCCTGAGCCATTAAACAGCTGCTTCGTGGCCAAAGCTGCTCTGACT tgaattaaaaatgaaaagaatagtaggatgtcctggcttatttcctgcagACTCATACTACCCTAGCATTGAGTATCCTCAGTGTACTCCCTGGTCTATCTGGCATC---------TCCATCAGTCTGGCTGCACTAGAACCTGCACCACAGCAATGTAAACTTGTATCCACACAACTGGAAAGAACTCAAGATGCATATCATTTTTCTACTCCTGAGCCATTAAACAGCTGTTTTGTGGCCAAAGCATCTCTAACTgtaagtatcaagaatgcacatgtaccaagactttcccatgggatatatat Alignment from CESAR GTTCACAGCAGCCTAGCCCTGAGCATCCTGAGTGTCCTCTCTGCTCTTACAGGCATCGCTATTCTCTCTGTCAGTTTGGCTGCTTTAGAGCCTGCCTTGCAGCAATGTAAGCTGGCTTTCACACAACTAGACACAACCCAAGATGCTTATCATTTCTTTAGCCCTGAGCCATTAAACAGCTGCTTCGTGGCCAAAGCTGCTCTGACT tgaattaaaaatgaaaagaatagtaggatgtcctggcttatttcctgcagACTCATACTACCCTAGCATTGAGTATCCTCAGTGTACTCCCTGGTCTATCTGGCATC---------TCCATCAGTCTGGCTGCACTAGAACCTGCACCACAGCAATGTAAACTTGTATCCACACAACTGGAAAGAACTCAAGATGCATATCATTTTTCTACTCCTGAGCCATTAAACAGCTGTTTTGTGGCCAAAGCATCTCTAACTgtaagtatcaagaatgcacatgtaccaagactttcccatgggatatatat Alignment from Spaln_aa2Genome GTTCACAGCAGCCTAGCCCTGAGCATCCTGAGTGTCCTCTCTGCTCTTACAGGCATCGCTATTCTCTCTGTCAGTTTGGCTGCTTTAGAGCCTGCCTTGCAGCAATGTAAGCTGGCTTTCACACAACTAGACACAACCCAAGATGCTTATCATTTCTTTAGCCCTGAGCCATTAAACAGCTGCTTCGTGGCCAAAGCTGCTCTGACT tgaattaaaaatgaaaagaatagtaggatgtcctggcttatttcctgcagACTCATACTACCCTAGCATTGAGTATC---------CTCAGTGTACTCCCTGGTCTATCTGGCATCTCCATCAGTCTGGCTGCACTAGAACCTGCACCACAGCAATGTAAACTTGTATCCACACAACTGGAAAGAACTCAAGATGCATATCATTTTTCTACTCCTGAGCCATTAAACAGCTGTTTTGTGGCCAAAGCATCTCTAACTgtaagtatcaagaatgcacatgtaccaagactttcccatgggatatatat Alignment from Spaln_nt2Genome GTTCACAGCAGCCTAGCCCTGAGCATCCTGAGTGTCCTCTCTGCTCTTACAGGCATCGCTATTCTCTCTGTCAGTTTGGCTGCTTTAGAGCCTGCCTTGCAGCAATGTAAGCTGGCTTTCACACAACTAGACACAACCCAAGATGCTTATCATTTCTTTAGCCCTGAGCCATTAAACAGCTGCTTCGTGGCCAAAGCTGCTCTGACT tgaattaaaaatgaaaagaatagtaggatgtcctggcttatttcctgcagACTCATACTACCCTAGCATTGAGTATCCTCAGTGTACTCCCTGGTCTATCTGGCA---------TCTCCATCAGTCTGGCTGCACTAGAACCTGCACCACAGCAATGTAAACTTGTATCCACACAACTGGAAAGAACTCAAGATGCATATCATTTTTCTACTCCTGAGCCATTAAACAGCTGTTTTGTGGCCAAAGCATCTCTAACTgtaagtatcaagaatgcacatgtaccaagactttcccatgggatatatat Alignment from Pairagon GTTCACAGCAGCCTAGCCCTGAGCATCCTGAGTGTCCTCTCTGCTCTTACAGGCATCGCTATTCTCTCTGTCAGTTTGGCTGCTTTAGAGCCTGCCTTGCAGCAATGTAAGCTGGCTTTCACACAACTAGACACAACCCAAGATGCTTATCATTTCTTTAGCCCTGAGCCATTAAACAGCTGCTTCGTGGCCAAAGCTGCTCTGACT tgaattaaaaatgaaaagaatagtaggatgtcctggcttatttcctgcagACTCATACTACCCTAGCATTGAGTATCCTCAGTGTACTCCCTGGTCTATCTGGCA---------TCTCCATCAGTCTGGCTGCACTAGAACCTGCACCACAGCAATGTAAACTTGTATCCACACAACTGGAAAGAACTCAAGATGCATATCATTTTTCTACTCCTGAGCCATTAAACAGCTGTTTTGTGGCCAAAGCATCTCTAACTgtaagtatcaagaatgcacatgtaccaagactttcccatgggatatatat Alignment from Exonerate_protein2genome GTTCACAGCAGCCTAGCCCTGAGCATCCTGAGTGTCCTCTCTGCTCTTACAGGCATCGCTATTCTCTCTGTCAGTTTGGCTGCTTTAGAGCCTGCCTTGCAGCAATGTAAGCTGGCTTTCACACAACTAGACACAACCCAAGATGCTTATCATTTCTTTAGCCCTGAGCCATTAAACAGCTGCTTCGTGGCCAAAGCTGCTCTGACT tgaattaaaaatgaaaagaatagtaggatgtcctggcttatttcctgcagACTCATACTACCCTAGCATTGAGTATCCTCAGTGTACTCCCTGGTCTATCTGGCATC---------TCCATCAGTCTGGCTGCACTAGAACCTGCACCACAGCAATGTAAACTTGTATCCACACAACTGGAAAGAACTCAAGATGCATATCATTTTTCTACTCCTGAGCCATTAAACAGCTGTTTTGTGGCCAAAGCATCTCTAACTgtaagtatcaagaatgcacatgtaccaagactttcccatgggatatatat Alignment from Exonerate_coding2genome GTTCACAGCAGCCTAGCCCTGAGCATCCTGAGTGTCCTCTCTGCTCTTACAGGCATCGCTATTCTCTCTGTCAGTTTGGCTGCTTTAGAGCCTGCCTTGCAGCAATGTAAGCTGGCTTTCACACAACTAGACACAACCCAAGATGCTTATCATTTCTTTAGCCCTGAGCCATTAAACAGCTGCTTCGTGGCCAAAGCTGCTCTGACT tgaattaaaaatgaaaagaatagtaggatgtcctggcttatttcctgcagACTCATACTACCCTAGCATTGAGTATCCTCAGTGTACTCCCTGGTCTATCTGGCATC---------TCCATCAGTCTGGCTGCACTAGAACCTGCACCACAGCAATGTAAACTTGTATCCACACAACTGGAAAGAACTCAAGATGCATATCATTTTTCTACTCCTGAGCCATTAAACAGCTGTTTTGTGGCCAAAGCATCTCTAACTgtaagtatcaagaatgcacatgtaccaagactttcccatgggatatatat Alignment from GeneWise GTTCACAGCAGCCTAGCCCTGAGCATCCTGAGTGTCCTCTCTGCTCTTACAGGCATCGCTATTCTCTCTGTCAGTTTGGCTGCTTTAGAGCCTGCCTTGCAGCAATGTAAGCTGGCTTTCACACAACTAGACACAACCCAAGATGCTTATCATTTCTTTAGCCCTGAGCCATTAAACAGCTGCTTCGTGGCCAAAGCTGCTCTGACT tgaattaaaaatgaaaagaatagtaggatgtcctggcttatttcctgcagACTCATACTACCCTAGCATTGAGTATCCTCAGTGTACTCCCTGGTCTATCTGGCATC---------TCCATCAGTCTGGCTGCACTAGAACCTGCACCACAGCAATGTAAACTTGTATCCACACAACTGGAAAGAACTCAAGATGCATATCATTTTTCTACTCCTGAGCCATTAAACAGCTGTTTTGTGGCCAAAGCATCTCTAACTgtaagtatcaagaatgcacatgtaccaagactttcccatgggatatatat #### Mta2_ID2532_5 --> 1 - 0 Original Alignment gGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG aatgacttgtgtctctacatcctaagttccctctctctcactgctctcaggGTAAAATGCAGTGTGAGTCTTTTGAACGAGACAGACATCTTAAATCAGTATCTAGACAAGGAGgtgagtagccatctggagaaaaaggcgggtggatattgaatgtaggtgag Alignment from CESAR gGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG aatgacttgtgtctctacatcctaagttccctctctctcactgctctcaggGTAAAATGCAGTGTGAGTCTTTTGAACGAGACAGACATCTTAAATCAGTATCTAGACAAGGAGgtgagtagccatctggagaaaaaggcgggtggatattgaatgtaggtgag Alignment from Spaln_aa2Genome GGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG aatgacttgtgtctctacatcctaagttccctctctctcactgctctcagGGTAAAATGCAGTGTGAGTCTTTTGAACGAGACAGACATCTTAAATCAGTATCTAGACAAGGAGgtgagtagccatctggagaaaaaggcgggtggatattgaatgtaggtgag Alignment from Spaln_nt2Genome GGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG aatgacttgtgtctctacatcctaagttccctctctctcactgctctcagGGTAAAATGCAGTGTGAGTCTTTTGAACGAGACAGACATCTTAAATCAGTATCTAGACAAGGAGgtgagtagccatctggagaaaaaggcgggtggatattgaatgtaggtgag Alignment from Pairagon GGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG aatgacttgtgtctctacatcctaagttccctctctctcactgctctcagGGTAAAATGCAGTGTGAGTCTTTTGAACGAGACAGACATCTTAAATCAGTATCTAGACAAGGAGgtgagtagccatctggagaaaaaggcgggtggatattgaatgtaggtgag Alignment from Exonerate_protein2genome GGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG aatgacttgtgtctctacatcctaagttccctctctctcactgctctcagGGTAAAATGCAGTGTGAGTCTTTTGAACGAGACAGACATCTTAAATCAGTATCTAGACAAGGAGgtgagtagccatctggagaaaaaggcgggtggatattgaatgtaggtgag Alignment from Exonerate_coding2genome GGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG aatgacttgtgtctctacatcctaagttccctctctctcactgctctcagGGTAAAATGCAGTGTGAGTCTTTTGAACGAGACAGACATCTTAAATCAGTATCTAGACAAGGAGgtgagtagccatctggagaaaaaggcgggtggatattgaatgtaggtgag Alignment from GeneWise GGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG aatgacttgtgtctctacatcctaagttccctctctctcactgctctcagGGTAAAATGCAGTGTGAGTCTTTTGAACGAGACAGACATCTTAAATCAGTATCTAGACAAGGAGgtgagtagccatctggagaaaaaggcgggtggatattgaatgtaggtgag #### Mta2_ID2536_9 --> 0 - 0 Original Alignment TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggtaaaaagaacatcaaaactctcaaagcaatgtccctgtgtatgcagTTTCATGCTATGGATACCCTGCAAAAGAATGGATATGACCTAGCCAAGGCTATGACAACTCTAGTACCACAGGGAGGTCCAGTTCTTTGCCAAGATGAGATGGGAGAATGGTCTGCTTCAGAAGCCATGCTAGTTGAAGAAGCTTTGGAGAAGTATGGAGAAGATTTTAATGACATCCGCCAAGACTTTgtgagcgatcaagaccaaggagtgaaagaacaatgatgatactaaaaaga Alignment from CESAR TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggtaaaaagaacatcaaaactctcaaagcaatgtccctgtgtatgcagTTTCATGCTATGGATACCCTGCAAAAGAATGGATATGACCTAGCCAAGGCTATGACAACTCTAGTACCACAGGGAGGTCCAGTTCTTTGCCAAGATGAGATGGGAGAATGGTCTGCTTCAGAAGCCATGCTAGTTGAAGAAGCTTTGGAGAAGTATGGAGAAGATTTTAATGACATCCGCCAAGACTTTgtgagcgatcaagaccaaggagtgaaagaacaatgatgatactaaaaaga Alignment from Spaln_aa2Genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggtaaaaagaacatcaaaactctcaaagcaatgtccctgtgtatgcagTTTCATGCTATGGATACCCTGCAAAAGAATGGATATGACCTAGCCAAGGCTATGACAACTCTAGTACCACAGGGAGGTCCAGTTCTTTGCCAAGATGAGATGGGAGAATGGTCTGCTTCAGAAGCCATGCTAGTTGAAGAAGCTTTGGAGAAGTATGGAGAAGATTTTAATGACATCCGCCAAGACTTTgtgagcgatcaagaccaaggagtgaaagaacaatgatgatactaaaaaga Alignment from Spaln_nt2Genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggtaaaaagaacatcaaaactctcaaagcaatgtccctgtgtatgcagTTTCATGCTATGGATACCCTGCAAAAGAATGGATATGACCTAGCCAAGGCTATGACAACTCTAGTACCACAGGGAGGTCCAGTTCTTTGCCAAGATGAGATGGGAGAATGGTCTGCTTCAGAAGCCATGCTAGTTGAAGAAGCTTTGGAGAAGTATGGAGAAGATTTTAATGACATCCGCCAAGACTTTgtgagcgatcaagaccaaggagtgaaagaacaatgatgatactaaaaaga Alignment from Pairagon TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggtaaaaagaacatcaaaactctcaaagcaatgtccctgtgtatgcagTTTCATGCTATGGATACCCTGCAAAAGAATGGATATGACCTAGCCAAGGCTATGACAACTCTAGTACCACAGGGAGGTCCAGTTCTTTGCCAAGATGAGATGGGAGAATGGTCTGCTTCAGAAGCCATGCTAGTTGAAGAAGCTTTGGAGAAGTATGGAGAAGATTTTAATGACATCCGCCAAGACTTTgtgagcgatcaagaccaaggagtgaaagaacaatgatgatactaaaaaga Alignment from Exonerate_protein2genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggtaaaaagaacatcaaaactctcaaagcaatgtccctgtgtatgcagTTTCATGCTATGGATACCCTGCAAAAGAATGGATATGACCTAGCCAAGGCTATGACAACTCTAGTACCACAGGGAGGTCCAGTTCTTTGCCAAGATGAGATGGGAGAATGGTCTGCTTCAGAAGCCATGCTAGTTGAAGAAGCTTTGGAGAAGTATGGAGAAGATTTTAATGACATCCGCCAAGACTTTgtgagcgatcaagaccaaggagtgaaagaacaatgatgatactaaaaaga Alignment from Exonerate_coding2genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggtaaaaagaacatcaaaactctcaaagcaatgtccctgtgtatgcagTTTCATGCTATGGATACCCTGCAAAAGAATGGATATGACCTAGCCAAGGCTATGACAACTCTAGTACCACAGGGAGGTCCAGTTCTTTGCCAAGATGAGATGGGAGAATGGTCTGCTTCAGAAGCCATGCTAGTTGAAGAAGCTTTGGAGAAGTATGGAGAAGATTTTAATGACATCCGCCAAGACTTTgtgagcgatcaagaccaaggagtgaaagaacaatgatgatactaaaaaga Alignment from GeneWise TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggtaaaaagaacatcaaaactctcaaagcaatgtccctgtgtatgcagTTTCATGCTATGGATACCCTGCAAAAGAATGGATATGACCTAGCCAAGGCTATGACAACTCTAGTACCACAGGGAGGTCCAGTTCTTTGCCAAGATGAGATGGGAGAATGGTCTGCTTCAGAAGCCATGCTAGTTGAAGAAGCTTTGGAGAAGTATGGAGAAGATTTTAATGACATCCGCCAAGACTTTgtgagcgatcaagaccaaggagtgaaagaacaatgatgatactaaaaaga #### Mta2_ID2539_12 --> 1 - 1 Original Alignment tACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACa atcgcggtaggagaaagtctagtggcctctctttctctcccttactttagcACAAAGCCAAATCCAAACCAGATTATCTCTGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCAGAAAGGACTGACTTGTGAGAGCTGTCATagtaagttacacatctgatatatcccttactattagatattcatggtttgt Alignment from CESAR tACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACa atcgcggtaggagaaagtctagtggcctctctttctctcccttactttagcACAAAGCCAAATCCAAACCAGATTATCTCTGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCAGAAAGGACTGACTTGTGAGAGCTGTCATagtaagttacacatctgatatatcccttactattagatattcatggtttgt Alignment from Spaln_aa2Genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA atcgcggtaggagaaagtctagtggcctctctttctctcccttactttagCACAAAGCCAAATCCAAACCAGATTATCTCTGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCAGAAAGGACTGACTTGTGAGAGCTGTCATAgtaagttacacatctgatatatcccttactattagatattcatggtttgt Alignment from Spaln_nt2Genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA atcgcggtaggagaaagtctagtggcctctctttctctcccttactttagCACAAAGCCAAATCCAAACCAGATTATCTCTGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCAGAAAGGACTGACTTGTGAGAGCTGTCATAgtaagttacacatctgatatatcccttactattagatattcatggtttgt Alignment from Pairagon TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA atcgcggtaggagaaagtctagtggcctctctttctctcccttactttagCACAAAGCCAAATCCAAACCAGATTATCTCTGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCAGAAAGGACTGACTTGTGAGAGCTGTCATAgtaagttacacatctgatatatcccttactattagatattcatggtttgt Alignment from Exonerate_protein2genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA atcgcggtaggagaaagtctagtggcctctctttctctcccttactttagCACAAAGCCAAATCCAAACCAGATTATCTCTGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCAGAAAGGACTGACTTGTGAGAGCTGTCATAgtaagttacacatctgatatatcccttactattagatattcatggtttgt Alignment from Exonerate_coding2genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA atcgcggtaggagaaagtctagtggcctctctttctctcccttactttagCACAAAGCCAAATCCAAACCAGATTATCTCTGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCAGAAAGGACTGACTTGTGAGAGCTGTCATAgtaagttacacatctgatatatcccttactattagatattcatggtttgt Alignment from GeneWise TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA atcgcggtaggagaaagtctagtggcctctctttctctcccttactttagCACAAAGCCAAATCCAAACCAGATTATCTCTGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCAGAAAGGACTGACTTGTGAGAGCTGTCATAgtaagttacacatctgatatatcccttactattagatattcatggtttgt #### Mta2_ID2543_16 --> 2 - 0 Original Alignment tgGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT ggaggatcacattcccaagccaggtcagattaatgtttttgttctttcaggtGCACAGTCACTTCTAAAGCCAAAAACACCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGAAACGCTCATACGAGACAgtgacttgaccagaataagagcataccagtaattaccttacttttttaat Alignment from CESAR tgGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT ggaggatcacattcccaagccaggtcagattaatgtttttgttctttcaggtGCACAGTCACTTCTAAAGCCAAAAACACCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGAAACGCTCATACGAGACAgtgacttgaccagaataagagcataccagtaattaccttacttttttaat Alignment from Spaln_aa2Genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT ggaggatcacattcccaagccaggtcagattaatgtttttgttctttcagGTGCACAGTCACTTCTAAAGCCAAAAACACCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGAAACGCTCATACGAGACAgtgacttgaccagaataagagcataccagtaattaccttacttttttaat Alignment from Spaln_nt2Genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT ggaggatcacattcccaagccaggtcagattaatgtttttgttctttcagGTGCACAGTCACTTCTAAAGCCAAAAACACCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGAAACGCTCATACGAGACAgtgacttgaccagaataagagcataccagtaattaccttacttttttaat Alignment from Pairagon TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT ggaggatcacattcccaagccaggtcagattaatgtttttgttctttcagGTGCACAGTCACTTCTAAAGCCAAAAACACCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGAAACGCTCATACGAGACAgtgacttgaccagaataagagcataccagtaattaccttacttttttaat Alignment from Exonerate_protein2genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT ggaggatcacattcccaagccaggtcagattaatgtttttgttctttcagGTGCACAGTCACTTCTAAAGCCAAAAACACCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGAAACGCTCATACGAGACAgtgacttgaccagaataagagcataccagtaattaccttacttttttaat Alignment from Exonerate_coding2genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT ggaggatcacattcccaagccaggtcagattaatgtttttgttctttcagGTGCACAGTCACTTCTAAAGCCAAAAACACCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGAAACGCTCATACGAGACAgtgacttgaccagaataagagcataccagtaattaccttacttttttaat Alignment from GeneWise -------------------------------------------------GTGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT GGAGGATCACATTCCCAAGCCAGGTCAGATTAATGTTTTTGTTCTTTCAGGTGCACAGTCACTTCTAAAGCCAAAAACACCCAGGGGTACTGAGACACCAATCAACAGAAACCAACTGACCCAGAATCGAGGCCTGGGGGGAATTATGGTGAAACGCTCATACGAGACAgtgacttgaccagaataagagcataccagtaattaccttacttttttaat #### Mtl5_ID56_7 --> 0 - 0 Original Alignment GCGTGTCTTGATAGAAAT---CCTGAAGCTTTCCAACCAAAAATGGGGAAAGGCCGTCTGGGAGCTGCTAAACTTCGACACAGCAAAGGGTGCAACTGTAAGCGCTCAGGCTGCCTGAAGAACTACTGTGAGTGCTATGAG gtaaataccaaaattcctcacaaatgattgactttttctgtcccttgcagGCGTGCCTTGATAGAAATCCACCAGATGCTTTCCAACCCAAAATGGGGAAAGGCCGGTTAGGGCCTGCAAAACTTCGACATAGCAAAGGGTGTAACTGCAAGCACTCAGGGTGTGTTAAGAACTACTGTGACTGCTTTGAGgtgagtcccaggagataggtattgcctatgctaggttgggcatgtagtgt Alignment from CESAR GCGTGTCTTGATAGAAATCCT---GAAGCTTTCCAACCAAAAATGGGGAAAGGCCGTCTGGGAGCTGCTAAACTTCGACACAGCAAAGGGTGCAACTGTAAGCGCTCAGGCTGCCTGAAGAACTACTGTGAGTGCTATGAG gtaaataccaaaattcctcacaaatgattgactttttctgtcccttgcagGCGTGCCTTGATAGAAATCCACCAGATGCTTTCCAACCCAAAATGGGGAAAGGCCGGTTAGGGCCTGCAAAACTTCGACATAGCAAAGGGTGTAACTGCAAGCACTCAGGGTGTGTTAAGAACTACTGTGACTGCTTTGAGgtgagtcccaggagataggtattgcctatgctaggttgggcatgtagtgt Alignment from Spaln_aa2Genome GCGTGTCTTGATAGAAAT---CCTGAAGCTTTCCAACCAAAAATGGGGAAAGGCCGTCTGGGAGCTGCTAAACTTCGACACAGCAAAGGGTGCAACTGTAAGCGCTCAGGCTGCCTGAAGAACTACTGTGAGTGCTATGAG gtaaataccaaaattcctcacaaatgattgactttttctgtcccttgcagGCGTGCCTTGATAGAAATCCACCAGATGCTTTCCAACCCAAAATGGGGAAAGGCCGGTTAGGGCCTGCAAAACTTCGACATAGCAAAGGGTGTAACTGCAAGCACTCAGGGTGTGTTAAGAACTACTGTGACTGCTTTGAGgtgagtcccaggagataggtattgcctatgctaggttgggcatgtagtgt Alignment from Spaln_nt2Genome GCGTGTCTTGATAGAAAT---CCTGAAGCTTTCCAACCAAAAATGGGGAAAGGCCGTCTGGGAGCTGCTAAACTTCGACACAGCAAAGGGTGCAACTGTAAGCGCTCAGGCTGCCTGAAGAACTACTGTGAGTGCTATGAG gtaaataccaaaattcctcacaaatgattgactttttctgtcccttgcagGCGTGCCTTGATAGAAATCCACCAGATGCTTTCCAACCCAAAATGGGGAAAGGCCGGTTAGGGCCTGCAAAACTTCGACATAGCAAAGGGTGTAACTGCAAGCACTCAGGGTGTGTTAAGAACTACTGTGACTGCTTTGAGgtgagtcccaggagataggtattgcctatgctaggttgggcatgtagtgt Alignment from Pairagon GCGTGTCTTGATAGAAAT---CCTGAAGCTTTCCAACCAAAAATGGGGAAAGGCCGTCTGGGAGCTGCTAAACTTCGACACAGCAAAGGGTGCAACTGTAAGCGCTCAGGCTGCCTGAAGAACTACTGTGAGTGCTATGAG gtaaataccaaaattcctcacaaatgattgactttttctgtcccttgcagGCGTGCCTTGATAGAAATCCACCAGATGCTTTCCAACCCAAAATGGGGAAAGGCCGGTTAGGGCCTGCAAAACTTCGACATAGCAAAGGGTGTAACTGCAAGCACTCAGGGTGTGTTAAGAACTACTGTGACTGCTTTGAGgtgagtcccaggagataggtattgcctatgctaggttgggcatgtagtgt Alignment from Exonerate_protein2genome GCGTGTCTTGATAGAAAT---CCTGAAGCTTTCCAACCAAAAATGGGGAAAGGCCGTCTGGGAGCTGCTAAACTTCGACACAGCAAAGGGTGCAACTGTAAGCGCTCAGGCTGCCTGAAGAACTACTGTGAGTGCTATGAG gtaaataccaaaattcctcacaaatgattgactttttctgtcccttgcagGCGTGCCTTGATAGAAATCCACCAGATGCTTTCCAACCCAAAATGGGGAAAGGCCGGTTAGGGCCTGCAAAACTTCGACATAGCAAAGGGTGTAACTGCAAGCACTCAGGGTGTGTTAAGAACTACTGTGACTGCTTTGAGgtgagtcccaggagataggtattgcctatgctaggttgggcatgtagtgt Alignment from Exonerate_coding2genome GCGTGTCTTGATAGAAAT---CCTGAAGCTTTCCAACCAAAAATGGGGAAAGGCCGTCTGGGAGCTGCTAAACTTCGACACAGCAAAGGGTGCAACTGTAAGCGCTCAGGCTGCCTGAAGAACTACTGTGAGTGCTATGAG gtaaataccaaaattcctcacaaatgattgactttttctgtcccttgcagGCGTGCCTTGATAGAAATCCACCAGATGCTTTCCAACCCAAAATGGGGAAAGGCCGGTTAGGGCCTGCAAAACTTCGACATAGCAAAGGGTGTAACTGCAAGCACTCAGGGTGTGTTAAGAACTACTGTGACTGCTTTGAGgtgagtcccaggagataggtattgcctatgctaggttgggcatgtagtgt Alignment from GeneWise GCGTGTCTTGATAGAAAT---CCTGAAGCTTTCCAACCAAAAATGGGGAAAGGCCGTCTGGGAGCTGCTAAACTTCGACACAGCAAAGGGTGCAACTGTAAGCGCTCAGGCTGCCTGAAGAACTACTGTGAGTGCTATGAG gtaaataccaaaattcctcacaaatgattgactttttctgtcccttgcagGCGTGCCTTGATAGAAATCCACCAGATGCTTTCCAACCCAAAATGGGGAAAGGCCGGTTAGGGCCTGCAAAACTTCGACATAGCAAAGGGTGTAACTGCAAGCACTCAGGGTGTGTTAAGAACTACTGTGACTGCTTTGAGgtgagtcccaggagataggtattgcctatgctaggttgggcatgtagtgt #### Mxi1_ID11257_2 --> 2 - 2 Original Alignment agTGTGAACATGGCTACGCCTCATCGTTCCCCTCCATGCCGAGCCCCCGGCTACAGCACTCGAAGCCCCCACGGAGGTTGAGCCGGGCACAGAAACACAGCAGTGGAAGCAGCAACACCAGCACTGCCAACag gctttaatattgtcagcctaactaggagctgctgtctacttcgttggcagagTGTGATCATGGCTATGCCTCATCATTCCCTTCTATGCCAAGCCCTCAGCTACAGCACTCAAAGCCCCCACGGAGGTTCAGCCAAGCACAGAAGCACAGCAGTGGAAGCAGCAATACCAGTATTGCCAACaggtatgtatagtgtgtagactcagaagtttatgctaatgatggtgtaggtg Alignment from CESAR agTGTGAACATGGCTACGCCTCATCGTTCCCCTCCATGCCGAGCCCCCGGCTACAGCACTCGAAGCCCCCACGGAGGTTGAGCCGGGCACAGAAACACAGCAGTGGAAGCAGCAACACCAGCACTGCCAACag gctttaatattgtcagcctaactaggagctgctgtctacttcgttggcagagTGTGATCATGGCTATGCCTCATCATTCCCTTCTATGCCAAGCCCTCAGCTACAGCACTCAAAGCCCCCACGGAGGTTCAGCCAAGCACAGAAGCACAGCAGTGGAAGCAGCAATACCAGTATTGCCAACaggtatgtatagtgtgtagactcagaagtttatgctaatgatggtgtaggtg Alignment from Spaln_aa2Genome AGTGTGAACATGGCTACGCCTCATCGTTCCCCTCCATGCCGAGCCCCCGGCTACAGCACTCGAAGCCCCCACGGAGGTTGAGCCGGGCACAGAAACACAGCAGTGGAAGCAGCAACACCAGCACTGCCAACAG gctttaatattgtcagcctaactaggagctgctgtctacttcgttggcagAGTGTGATCATGGCTATGCCTCATCATTCCCTTCTATGCCAAGCCCTCAGCTACAGCACTCAAAGCCCCCACGGAGGTTCAGCCAAGCACAGAAGCACAGCAGTGGAAGCAGCAATACCAGTATTGCCAACAGgtatgtatagtgtgtagactcagaagtttatgctaatgatggtgtaggtg Alignment from Spaln_nt2Genome AGTGTGAACATGGCTACGCCTCATCGTTCCCCTCCATGCCGAGCCCCCGGCTACAGCACTCGAAGCCCCCACGGAGGTTGAGCCGGGCACAGAAACACAGCAGTGGAAGCAGCAACACCAGCACTGCCAACAG gctttaatattgtcagcctaactaggagctgctgtctacttcgttggcagAGTGTGATCATGGCTATGCCTCATCATTCCCTTCTATGCCAAGCCCTCAGCTACAGCACTCAAAGCCCCCACGGAGGTTCAGCCAAGCACAGAAGCACAGCAGTGGAAGCAGCAATACCAGTATTGCCAACAGgtatgtatagtgtgtagactcagaagtttatgctaatgatggtgtaggtg Alignment from Pairagon AGTGTGAACATGGCTACGCCTCATCGTTCCCCTCCATGCCGAGCCCCCGGCTACAGCACTCGAAGCCCCCACGGAGGTTGAGCCGGGCACAGAAACACAGCAGTGGAAGCAGCAACACCAGCACTGCCAACAG gctttaatattgtcagcctaactaggagctgctgtctacttcgttggcagAGTGTGATCATGGCTATGCCTCATCATTCCCTTCTATGCCAAGCCCTCAGCTACAGCACTCAAAGCCCCCACGGAGGTTCAGCCAAGCACAGAAGCACAGCAGTGGAAGCAGCAATACCAGTATTGCCAACAGgtatgtatagtgtgtagactcagaagtttatgctaatgatggtgtaggtg Alignment from Exonerate_protein2genome AGTGTGAACATGGCTACGCCTCATCGTTCCCCTCCATGCCGAGCCCCCGGCTACAGCACTCGAAGCCCCCACGGAGGTTGAGCCGGGCACAGAAACACAGCAGTGGAAGCAGCAACACCAGCACTGCCAACAG gctttaatattgtcagcctaactaggagctgctgtctacttcgttggcagAGTGTGATCATGGCTATGCCTCATCATTCCCTTCTATGCCAAGCCCTCAGCTACAGCACTCAAAGCCCCCACGGAGGTTCAGCCAAGCACAGAAGCACAGCAGTGGAAGCAGCAATACCAGTATTGCCAACAGgtatgtatagtgtgtagactcagaagtttatgctaatgatggtgtaggtg Alignment from Exonerate_coding2genome AGTGTGAACATGGCTACGCCTCATCGTTCCCCTCCATGCCGAGCCCCCGGCTACAGCACTCGAAGCCCCCACGGAGGTTGAGCCGGGCACAGAAACACAGCAGTGGAAGCAGCAACACCAGCACTGCCAACAG gctttaatattgtcagcctaactaggagctgctgtctacttcgttggcagAGTGTGATCATGGCTATGCCTCATCATTCCCTTCTATGCCAAGCCCTCAGCTACAGCACTCAAAGCCCCCACGGAGGTTCAGCCAAGCACAGAAGCACAGCAGTGGAAGCAGCAATACCAGTATTGCCAACAGgtatgtatagtgtgtagactcagaagtttatgctaatgatggtgtaggtg Alignment from GeneWise AGTGTGAACATGGCTACGCCTCATCGTTCCCCTCCATGCCGAGCCCCCGGCTACAGCACTCGAAGCCCCCACGGAGGTTGAGCCGGGCACAGAAACACAGCAGTGGAAGCAGCAACACCAGCACTGCCAACAGATCTACACACAAT gctttaatattgtcagcctaactaggagctgctgtctacttcgttggcagAGTGTGATCATGGCTATGCCTCATCATTCCCTTCTATGCCAAGCCCTCAGCTACAGCACTCAAAGCCCCCACGGAGGTTCAGCCAAGCACAGAAGCACAGCAGTGGAAGCAGCAATACCAGTATTGCCAACAGG---------TATgtatagtgtgtagactcagaagtttatgctaatgatg #### Myrf_ID2729_8 --> 1 - 0 Original Alignment gCCTATGCTCACCTATCGTGTGGACGCTGACAAGGGCTTCAACTTTTCCGTGGGCGACGATGCTTTTGTGTGCCAGAAGAAGAACCACTTCCAGGTGACCGTGTACATCGGCATGCTGGGGGAGCCCAAGTACGTCAAGACACCGGAAGGCCTCAAGCCCCTGGACTGCTTCTATCTGAAGCTGCATGGTGTGAAG tttctactgtacctcagaccccccaaccacccatgcctctgaccctacaggCCTATGCTTACCTATCGTGTGGATTCTGACAAGGGTTTCAACTTTTCTGTGGGAGATGATGCTTTTGTGTGCCAGAAAAAGAACCACTTCCAGGTGACTGTGTATATCGGCATGCTGGGGGAGCCCAAGTATGTTAAGACACCGGAAGGCCTCAAGCCGCTGGACTGCTTTTATTTGAAGCTGCATGGTGTAAAGgtacagcttaagaatattttctgtagagagtacaatagattcaatgccat Alignment from CESAR gCCTATGCTCACCTATCGTGTGGACGCTGACAAGGGCTTCAACTTTTCCGTGGGCGACGATGCTTTTGTGTGCCAGAAGAAGAACCACTTCCAGGTGACCGTGTACATCGGCATGCTGGGGGAGCCCAAGTACGTCAAGACACCGGAAGGCCTCAAGCCCCTGGACTGCTTCTATCTGAAGCTGCATGGTGTGAAG tttctactgtacctcagaccccccaaccacccatgcctctgaccctacaggCCTATGCTTACCTATCGTGTGGATTCTGACAAGGGTTTCAACTTTTCTGTGGGAGATGATGCTTTTGTGTGCCAGAAAAAGAACCACTTCCAGGTGACTGTGTATATCGGCATGCTGGGGGAGCCCAAGTATGTTAAGACACCGGAAGGCCTCAAGCCGCTGGACTGCTTTTATTTGAAGCTGCATGGTGTAAAGgtacagcttaagaatattttctgtagagagtacaatagattcaatgccat Alignment from Spaln_aa2Genome GCCTATGCTCACCTATCGTGTGGACGCTGACAAGGGCTTCAACTTTTCCGTGGGCGACGATGCTTTTGTGTGCCAGAAGAAGAACCACTTCCAGGTGACCGTGTACATCGGCATGCTGGGGGAGCCCAAGTACGTCAAGACACCGGAAGGCCTCAAGCCCCTGGACTGCTTCTATCTGAAGCTGCATGGTGTGAAG tttctactgtacctcagaccccccaaccacccatgcctctgaccctacagGCCTATGCTTACCTATCGTGTGGATTCTGACAAGGGTTTCAACTTTTCTGTGGGAGATGATGCTTTTGTGTGCCAGAAAAAGAACCACTTCCAGGTGACTGTGTATATCGGCATGCTGGGGGAGCCCAAGTATGTTAAGACACCGGAAGGCCTCAAGCCGCTGGACTGCTTTTATTTGAAGCTGCATGGTGTAAAGgtacagcttaagaatattttctgtagagagtacaatagattcaatgccat Alignment from Spaln_nt2Genome GCCTATGCTCACCTATCGTGTGGACGCTGACAAGGGCTTCAACTTTTCCGTGGGCGACGATGCTTTTGTGTGCCAGAAGAAGAACCACTTCCAGGTGACCGTGTACATCGGCATGCTGGGGGAGCCCAAGTACGTCAAGACACCGGAAGGCCTCAAGCCCCTGGACTGCTTCTATCTGAAGCTGCATGGTGTGAAG tttctactgtacctcagaccccccaaccacccatgcctctgaccctacagGCCTATGCTTACCTATCGTGTGGATTCTGACAAGGGTTTCAACTTTTCTGTGGGAGATGATGCTTTTGTGTGCCAGAAAAAGAACCACTTCCAGGTGACTGTGTATATCGGCATGCTGGGGGAGCCCAAGTATGTTAAGACACCGGAAGGCCTCAAGCCGCTGGACTGCTTTTATTTGAAGCTGCATGGTGTAAAGgtacagcttaagaatattttctgtagagagtacaatagattcaatgccat Alignment from Pairagon GCCTATGCTCACCTATCGTGTGGACGCTGACAAGGGCTTCAACTTTTCCGTGGGCGACGATGCTTTTGTGTGCCAGAAGAAGAACCACTTCCAGGTGACCGTGTACATCGGCATGCTGGGGGAGCCCAAGTACGTCAAGACACCGGAAGGCCTCAAGCCCCTGGACTGCTTCTATCTGAAGCTGCATGGTGTGAAG tttctactgtacctcagaccccccaaccacccatgcctctgaccctacagGCCTATGCTTACCTATCGTGTGGATTCTGACAAGGGTTTCAACTTTTCTGTGGGAGATGATGCTTTTGTGTGCCAGAAAAAGAACCACTTCCAGGTGACTGTGTATATCGGCATGCTGGGGGAGCCCAAGTATGTTAAGACACCGGAAGGCCTCAAGCCGCTGGACTGCTTTTATTTGAAGCTGCATGGTGTAAAGgtacagcttaagaatattttctgtagagagtacaatagattcaatgccat Alignment from Exonerate_protein2genome GCCTATGCTCACCTATCGTGTGGACGCTGACAAGGGCTTCAACTTTTCCGTGGGCGACGATGCTTTTGTGTGCCAGAAGAAGAACCACTTCCAGGTGACCGTGTACATCGGCATGCTGGGGGAGCCCAAGTACGTCAAGACACCGGAAGGCCTCAAGCCCCTGGACTGCTTCTATCTGAAGCTGCATGGTGTGAAG tttctactgtacctcagaccccccaaccacccatgcctctgaccctacagGCCTATGCTTACCTATCGTGTGGATTCTGACAAGGGTTTCAACTTTTCTGTGGGAGATGATGCTTTTGTGTGCCAGAAAAAGAACCACTTCCAGGTGACTGTGTATATCGGCATGCTGGGGGAGCCCAAGTATGTTAAGACACCGGAAGGCCTCAAGCCGCTGGACTGCTTTTATTTGAAGCTGCATGGTGTAAAGgtacagcttaagaatattttctgtagagagtacaatagattcaatgccat Alignment from Exonerate_coding2genome GCCTATGCTCACCTATCGTGTGGACGCTGACAAGGGCTTCAACTTTTCCGTGGGCGACGATGCTTTTGTGTGCCAGAAGAAGAACCACTTCCAGGTGACCGTGTACATCGGCATGCTGGGGGAGCCCAAGTACGTCAAGACACCGGAAGGCCTCAAGCCCCTGGACTGCTTCTATCTGAAGCTGCATGGTGTGAAG tttctactgtacctcagaccccccaaccacccatgcctctgaccctacagGCCTATGCTTACCTATCGTGTGGATTCTGACAAGGGTTTCAACTTTTCTGTGGGAGATGATGCTTTTGTGTGCCAGAAAAAGAACCACTTCCAGGTGACTGTGTATATCGGCATGCTGGGGGAGCCCAAGTATGTTAAGACACCGGAAGGCCTCAAGCCGCTGGACTGCTTTTATTTGAAGCTGCATGGTGTAAAGgtacagcttaagaatattttctgtagagagtacaatagattcaatgccat Alignment from GeneWise GCCTATGCTCACCTATCGTGTGGACGCTGACAAGGGCTTCAACTTTTCCGTGGGCGACGATGCTTTTGTGTGCCAGAAGAAGAACCACTTCCAGGTGACCGTGTACATCGGCATGCTGGGGGAGCCCAAGTACGTCAAGACACCGGAAGGCCTCAAGCCCCTGGACTGCTTCTATCTGAAGCTGCATGGTGTGAAG tttctactgtacctcagaccccccaaccacccatgcctctgaccctacagGCCTATGCTTACCTATCGTGTGGATTCTGACAAGGGTTTCAACTTTTCTGTGGGAGATGATGCTTTTGTGTGCCAGAAAAAGAACCACTTCCAGGTGACTGTGTATATCGGCATGCTGGGGGAGCCCAAGTATGTTAAGACACCGGAAGGCCTCAAGCCGCTGGACTGCTTTTATTTGAAGCTGCATGGTGTAAAGgtacagcttaagaatattttctgtagagagtacaatagattcaatgccat #### Myrf_ID2737_3 --> 1 - 2 Original Alignment cTGCTTCCCTGAGATCTCTGCACCAGCCAGCACTGCCTCCTTCCCCCACGGGCCACCGGCCATTCCCGGCTCCAGCGGGCTCCACCATCTGAGCCCCCCTGGGAGCGGACCATCCCCTGGGCGCCATGGCCCCCTCCCACCCCCGACCTACGGCACCCCACTCAACTGCAACAACAACAACGGCATGGGCACCGCCCCTAAGCCCTTCCTGGGGGGCTCTGGGCCTCCCATCAAAGCAGAGCCAAAGGCCCCCTATGCC------CCAgg tatcatagtatctacttaggattggaacgtgtctgtctctgatatttcagcTGCTTCCCTGAGCTATCTCCACCGGCTAGTACTGCCTTCTTCCCTAAAGGGCCACTAACCATCCCTGGCTCTAGCGGTCTTCACCATCTAACTCCACCTGGGGCAGGGCCATCCCCTGGGTGC---------CTCCCACCCCCCACATATGACACCCCACTCAACTGCAACAACAATACCAGCATGGGCATGACTCCTAAGCCCTTTCTGGGAGGTCCTGGTCTCTCAATCAAAGCCGAGCCTAAGGCAGCTTATGCACGTGCACCCgggttagtggcggtctttgggcagtcataacaaacaatatctgctcaaaggt Alignment from CESAR cTGCTTCCCTGAGATCTCTGCACCAGCCAGCACTGCCTCCTTCCCCCACGGGCCACCGGCCATTCCCGGCTCCAGCGGGCTCCACCATCTGAGCCCCCCTGGGAGCGGACCATCCCCTGGGCGCCATGGCCCCCTCCCACCCCCGACCTACGGCACCCCACTCAACTGCAACAACAACAACGGCATGGGCACCGCCCCTAAGCCCTTCCTGGGGGGCTCTGGGCCTCCCATCAAAGCAGAGCCAAAGGCCCCCTAT------GCCCCAgg tatcatagtatctacttaggattggaacgtgtctgtctctgatatttcagcTGCTTCCCTGAGCTATCTCCACCGGCTAGTACTGCCTTCTTCCCTAAAGGGCCACTAACCATCCCTGGCTCTAGCGGTCTTCACCATCTAACTCCACCTGGGGCAGGGCCATCCCCTGGGTGC---------CTCCCACCCCCCACATATGACACCCCACTCAACTGCAACAACAATACCAGCATGGGCATGACTCCTAAGCCCTTTCTGGGAGGTCCTGGTCTCTCAATCAAAGCCGAGCCTAAGGCAGCTTATGCACGTGCACCCgggttagtggcggtctttgggcagtcataacaaacaatatctgctcaaaggt Alignment from Spaln_aa2Genome CTGCTTCCCTGAGATCTCTGCACCAGCCAGCACTGCCTCCTTCCCCCACGGGCCACCGGCCATTCCCGGCTCCAGCGGGCTCCACCATCTGAGCCCCCCTGGGAGCGGACCATCCCCTGGGCGCCATGGCCCCCTCCCACCCCCGACCTACGGCACCCCACTCAACTGCAACAACAACAACGGCATGGGCACCGCCCCTAAGCCCTTCCTGGGGGGCTCTGGGCCTCCCATCAAAGCAGAGCCAAAGGCCCCCTAT------GCCCCAGG tatcatagtatctacttaggattggaacgtgtctgtctctgatatttcagCTGCTTCCCTGAGCTATCTCCACCGGCTAGTACTGCCTTCTTCCCTAAAGGGCCACTAACCATCCCTGGCTCTAGCGGTCTTCACCATCTAACTCCACCTGGGGCAGGGCCATCCCCTGGGTGC---------CTCCCACCCCCCACATATGACACCCCACTCAACTGCAACAACAATACCAGCATGGGCATGACTCCTAAGCCCTTTCTGGGAGGTCCTGGTCTCTCAATCAAAGCCGAGCCTAAGGCAGCTTATGCACGTGCACCCGGgttagtggcggtctttgggcagtcataacaaacaatatctgctcaaaggt Alignment from Spaln_nt2Genome CTGCTTCCCTGAGATCTCTGCACCAGCCAGCACTGCCTCCTTCCCCCACGGGCCACCGGCCATTCCCGGCTCCAGCGGGCTCCACCATCTGAGCCCCCCTGGGAGCGGACCATCCCCTGGGCGCCATGGCCCCCTCCCACCCCCGACCTACGGCACCCCACTCAACTGCAACAACAACAACGGCATGGGCACCGCCCCTAAGCCCTTCCTGGGGGGCTCTGGGCCTCCCATCAAAGCAGAGCCAAAGGCCCCCTATGC-C tatcatagtatctacttaggattggaacgtgtctgtctctgatatttcagCTGCTTCCCTGAGCTATCTCCACCGGCTAGTACTGCCTTCTTCCCTAAAGGGCCACTAACCATCCCTGGCTCTAGCGGTCTTCACCATCTAACTCCACCTGGGGCAGGGCCATCCCCTGGGTG---------CCTCCCACCCCCCACATATGACACCCCACTCAACTGCAACAACAATACCAGCATGGGCATGACTCCTAAGCCCTTTCTGGGAGGTCCTGGTCTCTCAATCAAAGCCGAGCCTAAGGCAGCTTATGCACgtgcacccgggttagtggcggtctttgggcagtcataacaaacaatatctgctcaaaggt Alignment from Pairagon CTGCTTCCCTGAGATCTCTGCACCAGCCAGCACTGCCTCCTTCCCCCACGGGCCACCGGCCATTCCCGGCTCCAGCGGGCTCCACCATCTGAGCCCCCCTGGGAGCGGACCATCCCCTGGGCGCCATGGCCCCCTCCCACCCCCGACCTACGGCACCCCACTCAACTGCAACAACAACAACGGCATGGGCACCGCCCCTAAGCCCTTCCTGGGGGGCTCTGGGCCTCCCATCAAAGCAGAGCCAAAGGCCCCCTA------TGCCCCAGG tatcatagtatctacttaggattggaacgtgtctgtctctgatatttcagCTGCTTCCCTGAGCTATCTCCACCGGCTAGTACTGCCTTCTTCCCTAAAGGGCCACTAACCATCCCTGGCTCTAGCGGTCTTCACCATCTAACTCCACCTGGGGCAGGGCCATCCCCTGGGTG---------CCTCCCACCCCCCACATATGACACCCCACTCAACTGCAACAACAATACCAGCATGGGCATGACTCCTAAGCCCTTTCTGGGAGGTCCTGGTCTCTCAATCAAAGCCGAGCCTAAGGCAGCTTATGCACGTGCACCCGGgttagtggcggtctttgggcagtcataacaaacaatatctgctcaaaggt Alignment from Exonerate_protein2genome CTGCTTCCCTGAGATCTCTGCACCAGCCAGCACTGCCTCCTTCCCCCACGGGCCACCGGCCATTCCCGGCTCCAGCGGGCTCCACCATCTGAGCCCCCCTGGGAGCGGACCATCCCCTGGGCGCCATGGCCCCCTCCCACCCCCGACCTACGGCACCCCACTCAACTGCAACAACAACAACGGCATGGGCACCGCCCCTAAGCCCTTCCTGGGGGGCTCTGGGCCTCCCATCAAAGCAGAGCCAAAGGCCCCCTAT------GCCCCAGG tatcatagtatctacttaggattggaacgtgtctgtctctgatatttcagCTGCTTCCCTGAGCTATCTCCACCGGCTAGTACTGCCTTCTTCCCTAAAGGGCCACTAACCATCCCTGGCTCTAGCGGTCTTCACCATCTAACTCCACCTGGGGCAGGGCCATCCCCT---------GGGTGCCTCCCACCCCCCACATATGACACCCCACTCAACTGCAACAACAATACCAGCATGGGCATGACTCCTAAGCCCTTTCTGGGAGGTCCTGGTCTCTCAATCAAAGCCGAGCCTAAGGCAGCTTATGCACGTGCACCCGGgttagtggcggtctttgggcagtcataacaaacaatatctgctcaaaggt Alignment from Exonerate_coding2genome CTGCTTCCCTGAGATCTCTGCACCAGCCAGCACTGCCTCCTTCCCCCACGGGCCACCGGCCATTCCCGGCTCCAGCGGGCTCCACCATCTGAGCCCCCCTGGGAGCGGACCATCCCCTGGGCGCCATGGCCCCCTCCCACCCCCGACCTACGGCACCCCACTCAACTGCAACAACAACAACGGCATGGGCACCGCCCCTAAGCCCTTCCTGGGGGGCTCTGGGCCTCCCATCAAAGCAGAGCCAAAGGCCCCCTAT------GCCCCAGG tatcatagtatctacttaggattggaacgtgtctgtctctgatatttcagCTGCTTCCCTGAGCTATCTCCACCGGCTAGTACTGCCTTCTTCCCTAAAGGGCCACTAACCATCCCTGGCTCTAGCGGTCTTCACCATCTAACTCCACCTGGGGCAGGGCCATCCCCT---------GGGTGCCTCCCACCCCCCACATATGACACCCCACTCAACTGCAACAACAATACCAGCATGGGCATGACTCCTAAGCCCTTTCTGGGAGGTCCTGGTCTCTCAATCAAAGCCGAGCCTAAGGCAGCTTATGCACGTGCACCCGGgttagtggcggtctttgggcagtcataacaaacaatatctgctcaaaggt Alignment from GeneWise CTGCTTCCCTGAGATCTCTGCACCAGCCAGCACTGCCTCCTTCCCCCACGGGCCACCGGCCATTCCCGGCTCCAGCGGGCTCCACCATCTGAGCCCCCCTGGGAGCGGACCATCCCCTGGGCGCCATGGCCCCCTCCCACCCCCGACCTACGGCACCCCACTCAACTGCAACAACAACAACGGCATGGGCACCGCCCCTAAGCCCTTCCTGGGGGGCTCTGGGCCTCCCATCAAAGCAGAGCCAAAGGCCCCCTATGCC------CCAGG tatcatagtatctacttaggattggaacgtgtctgtctctgatatttcagCTGCTTCCCTGAGCTATCTCCACCGGCTAGTACTGCCTTCTTCCCTAAAGGGCCACTAACCATCCCTGGCTCTAGCGGTCTTCACCATCTAACTCCACCTGGGGCAGGGCCATCCCCTGGGTGC---------CTCCCACCCCCCACATATGACACCCCACTCAACTGCAACAACAATACCAGCATGGGCATGACTCCTAAGCCCTTTCTGGGAGGTCCTGGTCTCTCAATCAAAGCCGAGCCTAAGGCAGCTTATGCACGTGCACCCGGgttagtggcggtctttgggcagtcataacaaacaatatctgctcaaaggt #### Naa40_ID2076_4 --> 1 - 2 Original Alignment gTTGAATGTCTCCATTGAATGTAAGCGAGTGTCTGGATTGGAGCCAGCCACTGTGGACTGGGCCTTCGACCTGACCAAAACCAATATGCAGACGat gtcagtgccaagctagattgtgcgctagtggccctcgctttcttacccagcTTG------TGCATTGAATGT---AGAGTATCTGGTCTAGAATTGGCCACAGTGGACTGGGCCTTTGATCTGACCAAAACTAATATGCAGACAatgtaagggcggccataccagtatcaatcaaatctagggagcagtctactta Alignment from CESAR gTTGAATGTCTCCATTGAATGTAAGCGAGTGTCTGGATTGGAGCCAGCCACTGTGGACTGGGCCTTCGACCTGACCAAAACCAATATGCAGACGat gtcagtgccaagctagattgtgcgctagtggccctcgctttcttacccagcTTG------TGCATTGAATGT---AGAGTATCTGGTCTAGAATTGGCCACAGTGGACTGGGCCTTTGATCTGACCAAAACTAATATGCAGACAatgtaagggcggccataccagtatcaatcaaatctagggagcagtctactta Alignment from Spaln_aa2Genome GTTGAATGTCTCCATTGAATGTAAGCGAGTGTCTGGATTGGAGCCAGCCACTGTGGACTGGGCCTTCGACCTGACCAAAACCAATATGCAGACGAT gtcagtgccaagctagattgtgcgctagtggccctcgctttcttacccagCTTG------TGCATTGAATGT---AGAGTATCTGGTCTAGAATTGGCCACAGTGGACTGGGCCTTTGATCTGACCAAAACTAATATGCAGACAATgtaagggcggccataccagtatcaatcaaatctagggagcagtctactta Alignment from Spaln_nt2Genome GTTGAATGTCTCCATTGAATGTAAGCGAGTGTCTGGATTGGAGCCAGCCACTGTGGACTGGGCCTTCGACCTGACCAAAACCAATATGCAGACGAT gtcagtgccaagctagattgtgcgctagtggccctcgctttcttacccagCTTG------TGCATTGAATGTA---GAGTATCTGGTCTAGAATTGGCCACAGTGGACTGGGCCTTTGATCTGACCAAAACTAATATGCAGACAATgtaagggcggccataccagtatcaatcaaatctagggagcagtctactta Alignment from Pairagon GTTGAATGTCTCCATTGAATGTAAGCGAGTGTCTGGATTGGAGCCAGCCACTGTGGACTGGGCCTTCGACCTGACCAAAACCAATATGCAGACGAT gtcagtgccaagctagattgtgcgctagtggccctcgctttcttacccagCTTG------TGCATTGAATGTA---GAGTATCTGGTCTAGAATTGGCCACAGTGGACTGGGCCTTTGATCTGACCAAAACTAATATGCAGACAATgtaagggcggccataccagtatcaatcaaatctagggagcagtctactta Alignment from Exonerate_protein2genome GTTGAATGTCTCCATTGAATGTAAGCGAGTGTCTGGATTGGAGCCAGCCACTGTGGACTGGGCCTTCGACCTGACCAAAACCAATATGCAGACGAT gtcagtgccaagctagattgtgcgctagtggccctcgctttcttACCCAGCTTGTGCATTGAATGT---AGAGTATCTGGTCTAGAATTGGCCACAGTGGACTGGGCCTTTGATCTGACCAAAACTAATATGCAGACAATgtaagggcggccataccagtatcaatcaaatctagggagcagtctactta Alignment from Exonerate_coding2genome GTTGAATGTCTCCATTGAATGTAAGCGAGTGTCTGGATTGGAGCCAGCCACTGTGGACTGGGCCTTCGACCTGACCAAAACCAATATGCAGACGAT gtcagtgccaagctagattgtgcgctagtggccctcgctttcttACCCAGCTTGTGCATTGAATGT---AGAGTATCTGGTCTAGAATTGGCCACAGTGGACTGGGCCTTTGATCTGACCAAAACTAATATGCAGACAATgtaagggcggccataccagtatcaatcaaatctagggagcagtctactta Alignment from GeneWise GTTGAATGTCTCCATTGAATGTAAGCGAGTGTCTGGATTGGAGCCAGCCACTGTGGACTGGGCCTTCGACCTGACCAAAACCAATATGCAGACGAT gtcagtgccaagctagattgtgcgctagtggccctcgctttcttacccagCTTG------TGCATTGAATGT---AGAGTATCTGGTCTAGAATTGGCCACAGTGGACTGGGCCTTTGATCTGACCAAAACTAATATGCAGACAATgtaagggcggccataccagtatcaatcaaatctagggagcagtctactta #### Naaladl1_ID1443_2 --> 1 - 1 Original Alignment aGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCg acactgtttaagcttcaattctcctgcagctccatctcttgccttgccagaGAGCTTGCAAAAGAACCACATGTTGCCACCAGTACTCGAGATGATGCCCTGGTTCAGCTGCTGTTGGCACGCTGGAAGGATACAGCACCAGGATTGGACTCAGCCAAGACCTACGAATATCGGGTGTTGCTTGCATTCCCTAATGCA---GAGGCCAACAGTGTGGAAGTTggtatgtgtcagaagtcgctaggcagcacgccagaggcccattctctcctc Alignment from CESAR aGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCg acactgtttaagcttcaattctcctgcagctccatctcttgccttgccagaGAGCTTGCAAAAGAACCACATGTTGCCACCAGTACTCGAGATGATGCCCTGGTTCAGCTGCTGTTGGCACGCTGGAAGGATACAGCACCAGGATTGGACTCAGCCAAGACCTACGAATATCGGGTGTTGCTTGCATTCCCTAATGCAGAG---GCCAACAGTGTGGAAGTTggtatgtgtcagaagtcgctaggcagcacgcgtggcttttttctttgtctt Alignment from Spaln_aa2Genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG acactgtttaagcttcaattctcctgcagctccatctcttgccttgccagAGAGCTTGCAAAAGAACCACATGTTGCCACCAGTACTCGAGATGATGCCCTGGTTCAGCTGCTGTTGGCACGCTGGAAGGATACAGCACCAGGATTGGACTCAGCCAAGACCTACGAATATCGGGTGTTGCTTGCATTCCCTAATGCAGAG---GCCAACAGTGTGGAAGTTGgtatgtgtcagaagtcgctaggcagcacgccagaggcccattctctcctc Alignment from Spaln_nt2Genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG acactgtttaagcttcaattctcctgcagctccatctcttgccttgccagAGAGCTTGCAAAAGAACCACATGTTGCCACCAGTACTCGAGATGATGCCCTGGTTCAGCTGCTGTTGGCACGCTGGAAGGATACAGCACCAGGATTGGACTCAGCCAAGACCTACGAATATCGGGTGTTGCTTGCATTCCCTAATGCAGAG--GCC-AACAGTGTGGAAGTTGgtatgtgtcagaagtcgctaggcagcacgccagaggcccattctctcctc Alignment from Pairagon AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG acactgtttaagcttcaattctcctgcagctccatctcttgccttgccagAGAGCTTGCAAAAGAACCACATGTTGCCACCAGTACTCGAGATGATGCCCTGGTTCAGCTGCTGTTGGCACGCTGGAAGGATACAGCACCAGGATTGGACTCAGCCAAGACCTACGAATATCGGGTGTTGCTTGCATTCCCTAATGCAGAGG---CCAACAGTGTGGAAGTTGgtatgtgtcagaagtcgctaggcagcacgccagaggcccattctctcctc Alignment from Exonerate_protein2genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG acactgtttaagcttcaattctcctgcagctccatctcttgccttgccagAGAGCTTGCAAAAGAACCACATGTTGCCACCAGTACTCGAGATGATGCCCTGGTTCAGCTGCTGTTGGCACGCTGGAAGGATACAGCACCAGGATTGGACTCAGCCAAGACCTACGAATATCGGGTGTTGCTTGCATTCCCTAATGCAGAG---GCCAACAGTGTGGAAGTTGgtatgtgtcagaagtcgctaggcagcacgccagaggcccattctctcctc Alignment from Exonerate_coding2genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG acactgtttaagcttcaattctcctgcagctccatctcttgccttgccagAGAGCTTGCAAAAGAACCACATGTTGCCACCAGTACTCGAGATGATGCCCTGGTTCAGCTGCTGTTGGCACGCTGGAAGGATACAGCACCAGGATTGGACTCAGCCAAGACCTACGAATATCGGGTGTTGCTTGCATTCCCTAATGCAGAG---GCCAACAGTGTGGAAGTTGgtatgtgtcagaagtcgctaggcagcacgccagaggcccattctctcctc Alignment from GeneWise AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG acactgtttaagcttcaattctcctgcagctccatctcttgccttgccagAGAGCTTGCAAAAGAACCACATGTTGCCACCAGTACTCGAGATGATGCCCTGGTTCAGCTGCTGTTGGCACGCTGGAAGGATACAGCACCAGGATTGGACTCAGCCAAGACCTACGAATATCGGGTGTTGCTTGCATTCCCTAATGCAGAGGCC---AACAGTGTGGAAGTTGgtatgtgtcagaagtcgctaggcagcacgccagaggcccattctctcctc #### Naaladl1_ID1445_4 --> 0 - 0 Original Alignment GGCCTCCTTGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTAGAGACTCAGGGAATCAACCTCGAGGGCACCATCGCTCTGACTCGCTACGGGGGCGTAGGACGTGGGGCCAAG tcagcaaatatttgcatgagtcttttcaacccccgccctgggtggagcagGGCCTTCTTGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTAGAAACTCCAGAAATCAACCTTGAGGGCACAATCACCTTAACTCAGTACGGTGGCGTAGGACGTGGGGCCAAGgtatggaacacctgtaaggaagtaatttggataaaagtgaaggatagcag Alignment from CESAR GGCCTCCTTGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTAGAGACTCAGGGAATCAACCTCGAGGGCACCATCGCTCTGACTCGCTACGGGGGCGTAGGACGTGGGGCCAAG tcagcaaatatttgcatgagtcttttcaacccccgccctgggtggagcagGGCCTTCTTGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTAGAAACTCCAGAAATCAACCTTGAGGGCACAATCACCTTAACTCAGTACGGTGGCGTAGGACGTGGGGCCAAGgtatggaacacctgtaaggaagtaatttggataaaagtgaaggatagcag Alignment from Spaln_aa2Genome GGCCTCCTTGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTAGAGACTCAGGGAATCAACCTCGAGGGCACCATCGCTCTGACTCGCTACGGGGGCGTAGGACGTGGGGCCAAG tcagcaaatatttgcatgagtcttttcaacccccgccctgggtggagcagGGCCTTCTTGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTAGAAACTCCAGAAATCAACCTTGAGGGCACAATCACCTTAACTCAGTACGGTGGCGTAGGACGTGGGGCCAAGgtatggaacacctgtaaggaagtaatttggataaaagtgaaggatagcag Alignment from Spaln_nt2Genome GGCCTCCTTGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTAGAGACTCAGGGAATCAACCTCGAGGGCACCATCGCTCTGACTCGCTACGGGGGCGTAGGACGTGGGGCCAAG tcagcaaatatttgcatgagtcttttcaacccccgccctgggtggagcagGGCCTTCTTGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTAGAAACTCCAGAAATCAACCTTGAGGGCACAATCACCTTAACTCAGTACGGTGGCGTAGGACGTGGGGCCAAGgtatggaacacctgtaaggaagtaatttggataaaagtgaaggatagcag Alignment from Pairagon GGCCTCCTTGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTAGAGACTCAGGGAATCAACCTCGAGGGCACCATCGCTCTGACTCGCTACGGGGGCGTAGGACGTGGGGCCAAG tcagcaaatatttgcatgagtcttttcaacccccgccctgggtggagcagGGCCTTCTTGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTAGAAACTCCAGAAATCAACCTTGAGGGCACAATCACCTTAACTCAGTACGGTGGCGTAGGACGTGGGGCCAAGgtatggaacacctgtaaggaagtaatttggataaaagtgaaggatagcag Alignment from Exonerate_protein2genome GGCCTCCTTGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTAGAGACTCAGGGAATCAACCTCGAGGGCACCATCGCTCTGACTCGCTACGGGGGCGTAGGACGTGGGGCCAAG tcagcaaatatttgcatgagtcttttcaacccccgccctgggtggagcagGGCCTTCTTGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTAGAAACTCCAGAAATCAACCTTGAGGGCACAATCACCTTAACTCAGTACGGTGGCGTAGGACGTGGGGCCAAGgtatggaacacctgtaaggaagtaatttggataaaagtgaaggatagcag Alignment from Exonerate_coding2genome GGCCTCCTTGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTAGAGACTCAGGGAATCAACCTCGAGGGCACCATCGCTCTGACTCGCTACGGGGGCGTAGGACGTGGGGCCAAG tcagcaaatatttgcatgagtcttttcaacccccgccctgggtggagcagGGCCTTCTTGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTAGAAACTCCAGAAATCAACCTTGAGGGCACAATCACCTTAACTCAGTACGGTGGCGTAGGACGTGGGGCCAAGgtatggaacacctgtaaggaagtaatttggataaaagtgaaggatagcag Alignment from GeneWise GGCCTCCTTGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTAGAGACTCAGGGAATCAACCTCGAGGGCACCATCGCTCTGACTCGCTACGGGGGCGTAGGACGTGGGGCCAAG tcagcaaatatttgcatgagtcttttcaacccccgccctgggtggagcagGGCCTTCTTGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTAGAAACTCCAGAAATCAACCTTGAGGGCACAATCACCTTAACTCAGTACGGTGGCGTAGGACGTGGGGCCAAGgtatggaacacctgtaaggaagtaatttggataaaagtgaaggatagcag #### Naaladl1_ID1448_7 --> 1 - 1 Original Alignment tGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTg ttgtattatcactagtcaataatagctcaacacactctcgggtcccacagtGACATCAGAGTGCGTGTTCACAACAGATTAGAACTTAGAATTTCCACTAACGTGCTTGGCATCATCCAAGGCAGTGTAGAGCCTggtgagcccattaatactccgccctgccctttggccctagcacctggccaa Alignment from CESAR tGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTg ttgtattatcactagtcaataatagctcaacacactctcgggtcccacagtGACATCAGAGTGCGTGTTCACAACAGATTAGAACTTAGAATTTCCACTAACGTGCTTGGCATCATCCAAGGCAGTGTAGAGCCTggtgagcccattaatactccgccctgccctttggccctagcacctggccaa Alignment from Spaln_aa2Genome TGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTG ttgtattatcactagtcaataatagctcaacacactctcgggtcccacagTGACATCAGAGTGCGTGTTCACAACAGATTAGAACTTAGAATTTCCACTAACGTGCTTGGCATCATCCAAGGCAGTGTAGAGCCTGgtgagcccattaatactccgccctgccctttggccctagcacctggccaa Alignment from Spaln_nt2Genome TGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTG ttgtattatcactagtcaataatagctcaacacactctcgggtcccacagTGACATCAGAGTGCGTGTTCACAACAGATTAGAACTTAGAATTTCCACTAACGTGCTTGGCATCATCCAAGGCAGTGTAGAGCCTGgtgagcccattaatactccgccctgccctttggccctagcacctggccaa Alignment from Pairagon TGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTG ttgtattatcactagtcaataatagctcaacacactctcgggtcccacagTGACATCAGAGTGCGTGTTCACAACAGATTAGAACTTAGAATTTCCACTAACGTGCTTGGCATCATCCAAGGCAGTGTAGAGCCTGgtgagcccattaatactccgccctgccctttggccctagcacctggccaa Alignment from Exonerate_protein2genome TGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTG ttgtattatcactagtcaataatagctcaacacactctcgggtcccacagTGACATCAGAGTGCGTGTTCACAACAGATTAGAACTTAGAATTTCCACTAACGTGCTTGGCATCATCCAAGGCAGTGTAGAGCCTGgtgagcccattaatactccgccctgccctttggccctagcacctggccaa Alignment from Exonerate_coding2genome ttgtattatcactagtcaataatagctcaacacactctcgggtcccacagtgacatcagagtgcgtgttcacaacagattagaacttagaatttccactaacgtgcttggcatcatccaaggcagtgtagagcctggtgagcccattaatactccgccctgccctttggccctagcacctggccaa Alignment from GeneWise TGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTG ttgtattatcactagtcaataatagctcaacacactctcgggtcccacagTGACATCAGAGTGCGTGTTCACAACAGATTAGAACTTAGAATTTCCACTAACGTGCTTGGCATCATCCAAGGCAGTGTAGAGCCTGgtgagcccattaatactccgccctgccctttggccctagcacctggccaa #### Naaladl1_ID1450_9 --> 2 - 0 Original Alignment gcACCTGGCGACCCCGCAGGTCCATCATATTTGCCAGCTGGGGAGCAGAGGAATTCGGACTCATTGGCTCTACAGAATTTACAGAG aggtttcctaaatatcaacacactttgctgctgtgttcccatctccacaggtACCTGGCGACCCCGGAGGTCCCTCATATTTGCCAGCTGGGGAGCAGAGGAGTTTAGGGTAATTAGCCTGACAGATTTTACAGAGgtagctgccttacctattgaggaaggacactattgagccaagtctaggta Alignment from CESAR gcACCTGGCGACCCCGCAGGTCCATCATATTTGCCAGCTGGGGAGCAGAGGAATTCGGACTCATTGGCTCTACAGAATTTACAGAG aggtttcctaaatatcaacacactttgctgctgtgttcccatctccacaggtACCTGGCGACCCCGGAGGTCCCTCATATTTGCCAGCTGGGGAGCAGAGGAGTTTAGGGTAATTAGCCTGACAGATTTTACAGAGgtagctgccttacctattgaggaaggacactattgagccaagtctaggta Alignment from Spaln_aa2Genome GCACCTGGCGACCCCGCAGGTCCATCATATTTGCCAGCTGGGGAGCAGAGGAATTCGGACTCATTGGCTCTACAGAATTTACAGAG aggtttcctaaatatcaacacactttgctgctgtgttcccatctccacagGTACCTGGCGACCCCGGAGGTCCCTCATATTTGCCAGCTGGGGAGCAGAGGAGTTTAGGGTAATTAGCCTGACAGATTTTACAGAGgtagctgccttacctattgaggaaggacactattgagccaagtctaggta Alignment from Spaln_nt2Genome GCACCTGGCGACCCCGCAGGTCCATCATATTTGCCAGCTGGGGAGCAGAGGAATTCGGACTCATTGGCTCTACAGAATTTACAGAG aggtttcctaaatatcaacacactttgctgctgtgttcccatctccacagGTACCTGGCGACCCCGGAGGTCCCTCATATTTGCCAGCTGGGGAGCAGAGGAGTTTAGGGTAATTAGCCTGACAGATTTTACAGAGgtagctgccttacctattgaggaaggacactattgagccaagtctaggta Alignment from Pairagon GCACCTGGCGACCCCGCAGGTCCATCATATTTGCCAGCTGGGGAGCAGAGGAATTCGGACTCATTGGCTCTACAGAATTTACAGAG aggtttcctaaatatcaacacactttgctgctgtgttcccatctccacagGTACCTGGCGACCCCGGAGGTCCCTCATATTTGCCAGCTGGGGAGCAGAGGAGTTTAGGGTAATTAGCCTGACAGATTTTACAGAGgtagctgccttacctattgaggaaggacactattgagccaagtctaggta Alignment from Exonerate_protein2genome GCACCTGGCGACCCCGCAGGTCCATCATATTTGCCAGCTGGGGAGCAGAGGAATTCGGACTCATTGGCTCTACAGAATTTACAGAG aggtttcctaaatatcaacacactttgctgctgtgttcccatctccacagGTACCTGGCGACCCCGGAGGTCCCTCATATTTGCCAGCTGGGGAGCAGAGGAGTTTAGGGTAATTAGCCTGACAGATTTTACAGAGgtagctgccttacctattgaggaaggacactattgagccaagtctaggta Alignment from Exonerate_coding2genome GCACCTGGCGACCCCGCAGGTCCATCATATTTGCCAGCTGGGGAGCAGAGGAATTCGGACTCATTGGCTCTACAGAATTTACAGAG aggtttcctaaatatcaacacactttgctgctgtgttcccatctccacagGTACCTGGCGACCCCGGAGGTCCCTCATATTTGCCAGCTGGGGAGCAGAGGAGTTTAGGGTAATTAGCCTGACAGATTTTACAGAGgtagctgccttacctattgaggaaggacactattgagccaagtctaggta Alignment from GeneWise GCACCTGGCGACCCCGCAGGTCCATCATATTTGCCAGCTGGGGAGCAGAGGAATTCGGACTCATTGGCTCTACAGAATTTACAGAG aggtttcctaaatatcaacacactttgctgctgtgttcccatctccacagGTACCTGGCGACCCCGGAGGTCCCTCATATTTGCCAGCTGGGGAGCAGAGGAGTTTAGGGTAATTAGCCTGACAGATTTTACAGAGgtagctgccttacctattgaggaaggacactattgagccaagtctaggta #### Naaladl1_ID1454_13 --> 1 - 0 Original Alignment cCTGGGCACACTGGGCGCTGGCAGTGACTATGCCGCATTCGTTCACTTCCTGGGCATCACGTCCATGGACCTTGCCTACACCTATGACCGG attaaggtccagggagactctttttacactaaccacattttaccttacagcCTT---------GGGGCTGGTAGTGACTATGCAGCATTTGTTCACTTCGCAGGCATTACATCTATGGATTTTGCTTATACCTATGATCAGgtaaagcaagtttgcagcatggcaatgaaaggggactagttaggcaacca Alignment from CESAR cCTGGGCACACTGGGCGCTGGCAGTGACTATGCCGCATTCGTTCACTTCCTGGGCATCACGTCCATGGACCTTGCCTACACCTATGACCGG attaaggtccagggagactctttttacactaaccacattttaccttacagcCTT---------GGGGCTGGTAGTGACTATGCAGCATTTGTTCACTTCGCAGGCATTACATCTATGGATTTTGCTTATACCTATGATCAGgtaaagcaagtttgcagcatggcaatgaaaggggactagttaggcaacca Alignment from Spaln_aa2Genome CCTGGGCACACTGGGCGCTGGCAGTGACTATGCCGCATTCGTTCACTTCCTGGGCATCACGTCCATGGACCTTGCCTACACCTATGACCGG attaaggtccagggagactctttttacactaaccacattttaccttacagC---------CTTGGGGCTGGTAGTGACTATGCAGCATTTGTTCACTTCGCAGGCATTACATCTATGGATTTTGCTTATACCTATGATCAGgtaaagcaagtttgcagcatggcaatgaaaggggactagttaggcaacca Alignment from Spaln_nt2Genome CCTGGGCACACTGGGCGCTGGCAGTGACTATGCCGCATTCGTTCACTTCCTGGGCATCACGTCCATGGACCTTGCCTACACCTATGACCGG attaaggtccagggagactctttttacactaaccacattttaccttacagCCT--------TGGG-GCTGGTAGTGACTATGCAGCATTTGTTCACTTCGCAGGCATTACATCTATGGATTTTGCTTATACCTATGATCAGgtaaagcaagtttgcagcatggcaatgaaaggggactagttaggcaacca Alignment from Pairagon CCTGGGCACACTGGGCGCTGGCAGTGACTATGCCGCATTCGTTCACTTCCTGGGCATCACGTCCATGGACCTTGCCTACACCTATGACCGG attaaggtccagggagactctttttacactaaccacattttaccttacagC---------CTTGGGGCTGGTAGTGACTATGCAGCATTTGTTCACTTCGCAGGCATTACATCTATGGATTTTGCTTATACCTATGATCAGgtaaagcaagtttgcagcatggcaatgaaaggggactagttaggcaacca Alignment from Exonerate_protein2genome CCTGGGC---ACACTGGGCGCTGGCAGTGACTATGCCGCATTCGTTCACTTCCTGGGCATCACGTCCATGGACCTTGCCTACACCTATGACCGG attaaggtccagggagactctttttacactaaccacatTTTACCTTACAGCCTTGGGGCTGGTAGTGACTATGCAGCATTTGTTCACTTCGCAGGCATTACATCTATGGATTTTGCTTATACCTATGATCAGgtaaagcaagtttgcagcatggcaatgaaaggggactagttaggcaacca Alignment from Exonerate_coding2genome CTGGGCGCTGGCAGTGACTATGCCGCATTCGTTCACTTCCTGGGCATCACGTCCATG ATTAAGGTCCAGGGAGACTCTTTTTACACTAACCACATTTTACCTTACAGCCTTGGGgctggtagtgactatgcagcatttgttcacttcgcaggcattacatctatggattttgcttatacctatgatcaggtaaagcaagtttgcagcatggcaatgaaaggggactagttaggcaacca Alignment from GeneWise ------------------AGCCTGGGCACA---------------------CTGGGCGCTGGCAGTGACTATGCCGCATTCGTTCACTTCCTGGGCATCACGTCCATGGACCTTGCCTACACCTATGACCGG ATTAAGGTCCAGGGAGACTCTTTTTACACTAACCACATTTTACCTTACAGCCTTGGGGCTGGTAGTGACTATGCAGCATTTGTTCACTTCGCAGGCATTACATCTATGGATTTTGCTTATACCTATGATCAGgtaaagcaagtttgcagcatggcaatgaaaggggactagttaggcaacca #### Naaladl1_ID1457_16 --> 2 - 2 Original Alignment Gg ggCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTga GggtgagacccaacatcttgagactgtggtttctgtgctcttccccgcaggaCCTTTGGTAACGGCTGTGGCAAACTTTAAGGCTTCTGCTGCCTCGCTGGGAGAAGACATCCTGACCCTAGGTCAGAGCAGCCCTgagtaattgccagcagaggacatatctcaccaagtatacatgggggaggtac Alignment from CESAR Gg ggCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTga GggtgagtcccaacatcttgagactgtggtttctgtgctcttccccgcaggaCCTTTGGTAACGGCTGTGGCAAACTTTAAGGCTTCTGCTGCCTCGCTGGGAGAAGACATCCTGACCCTAGGTCAGAGCAGCCCTgagtaattgccagcagaggacatatctcaccaagtatacatgggggaggtac Alignment from Spaln_aa2Genome GG GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA GGgtgagacccaacatcttgagactgtggtttctgtgctcttccccgcagGACCTTTGGTAACGGCTGTGGCAAACTTTAAGGCTTCTGCTGCCTCGCTGGGAGAAGACATCCTGACCCTAGGTCAGAGCAGCCCTGAgtaattgccagcagaggacatatctcaccaagtatacatgggggaggtac Alignment from Spaln_nt2Genome GG GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA GGgtgagacccaacatcttgagactgtggtttctgtgctcttccccgcagGACCTTTGGTAACGGCTGTGGCAAACTTTAAGGCTTCTGCTGCCTCGCTGGGAGAAGACATCCTGACCCTAGGTCAGAGCAGCCCTGAgtaattgccagcagaggacatatctcaccaagtatacatgggggaggtac Alignment from Pairagon GG GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA GGgtgagacccaacatcttgagactgtggtttctgtgctcttccccgcagGACCTTTGGTAACGGCTGTGGCAAACTTTAAGGCTTCTGCTGCCTCGCTGGGAGAAGACATCCTGACCCTAGGTCAGAGCAGCCCTGAgtaattgccagcagaggacatatctcaccaagtatacatgggggaggtac Alignment from Exonerate_protein2genome GG GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA GGgtgagacccaacatcttgagactgtggtttctgtgctcttccccgcagGACCTTTGGTAACGGCTGTGGCAAACTTTAAGGCTTCTGCTGCCTCGCTGGGAGAAGACATCCTGACCCTAGGTCAGAGCAGCCCTGAgtaattgccagcagaggacatatctcaccaagtatacatgggggaggtac Alignment from Exonerate_coding2genome gggtgagacccaacatcttgagactgtggtttctgtgctcttccccgcaggacctttggtaacggctgtggcaaactttaaggcttctgctgcctcgctgggagaagacatcctgaccctaggtcagagcagccctgagtaattgccagcagaggacatatctcaccaagtatacatgggggaggtac Alignment from GeneWise G------------------------------------------------GGGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA GGGTGAGACCCAACATCTTGAGACTGTGGTTTCTGTGCTCTTCCCCGCAGGACCTTTGGTAACGGCTGTGGCAAACTTTAAGGCTTCTGCTGCCTCGCTGGGAGAAGACATCCTGACCCTAGGTCAGAGCAGCCCTGAgtaattgccagcagaggacatatctcaccaagtatacatgggggaggtac #### Naaladl1_ID1458_17 --> 1 - 2 Original Alignment tCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACag cagagatctagcccaatagaacagaacactgacaaatgtttctcttttagtCCTCTGCAGGTTCAGATGGTTAATGATCAACTAATGCTATTAGAGTGTGCATTTTTGAACCCTAGGGCATTCCCAGAGGAGAGGCATTACaggtaagtccatgtaaattgagttgccgagtcccaggcttagaactagagtt Alignment from CESAR tCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACag cagagatctagcccaatagaacagaacactgacaaatgtttctcttttagtCCTCTGCAGGTTCAGATGGTTAATGATCAACTAATGCTATTAGAGTGTGCATTTTTGAACCCTAGGGCATTCCCAGAGGAGAGGCATTACaggtaagtccatgtaaattgagttgccgagtcccaggcttagaactagagtt Alignment from Spaln_aa2Genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG cagagatctagcccaatagaacagaacactgacaaatgtttctcttttagTCCTCTGCAGGTTCAGATGGTTAATGATCAACTAATGCTATTAGAGTGTGCATTTTTGAACCCTAGGGCATTCCCAGAGGAGAGGCATTACAGgtaagtccatgtaaattgagttgccgagtcccaggcttagaactagagtt Alignment from Spaln_nt2Genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG cagagatctagcccaatagaacagaacactgacaaatgtttctcttttagTCCTCTGCAGGTTCAGATGGTTAATGATCAACTAATGCTATTAGAGTGTGCATTTTTGAACCCTAGGGCATTCCCAGAGGAGAGGCATTACAGgtaagtccatgtaaattgagttgccgagtcccaggcttagaactagagtt Alignment from Pairagon TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG cagagatctagcccaatagaacagaacactgacaaatgtttctcttttagTCCTCTGCAGGTTCAGATGGTTAATGATCAACTAATGCTATTAGAGTGTGCATTTTTGAACCCTAGGGCATTCCCAGAGGAGAGGCATTACAGgtaagtccatgtaaattgagttgccgagtcccaggcttagaactagagtt Alignment from Exonerate_protein2genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG cagagatctagcccaatagaacagaacactgacaaatgtttctcttttagTCCTCTGCAGGTTCAGATGGTTAATGATCAACTAATGCTATTAGAGTGTGCATTTTTGAACCCTAGGGCATTCCCAGAGGAGAGGCATTACAGgtaagtccatgtaaattgagttgccgagtcccaggcttagaactagagtt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG cagagatctagcccaatagaacagaacactgacaaatgtttctcttttagTCCTCTGCAGGTTCAGATGGTTAATGATCAACTAATGCTATTAGAGTGTGCATTTTTGAACCCTAGGGCATTCCCAGAGGAGAGGCATTACAGgtaagtccatgtaaattgagttgccgagtcccaggcttagaactagagtt #### Ndufv1_ID274_8 --> 0 - 1 Original Alignment ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGg ttgtcttagggtgaatagtcagaattgcagtatgtgttaccttctcccagGCAGACATTGTGAAAGCCATTGCTCATCTCATTGGGTTATACAAGTATGAAAGCTGTGGTCAGTGTACCCCATGCCGAGAAggtaaggtatctttaaagcctgttgtgctgttgtaaggctcacaatgctcc Alignment from CESAR ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGg ttgtcttagggtgaatagtcagaattgcagtatgtgttaccttctcccagGCAGACATTGTGAAAGCCATTGCTCATCTCATTGGGTTATACAAGTATGAAAGCTGTGGTCAGTGTACCCCATGCCGAGAAggtaaggtatctttaaagcctgttgtgctgttgtaaggctcacaatgctcc Alignment from Spaln_aa2Genome ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG ttgtcttagggtgaatagtcagaattgcagtatgtgttaccttctcccagGCAGACATTGTGAAAGCCATTGCTCATCTCATTGGGTTATACAAGTATGAAAGCTGTGGTCAGTGTACCCCATGCCGAGAAGgtaaggtatctttaaagcctgttgtgctgttgtaaggctcacaatgctcc Alignment from Spaln_nt2Genome ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG ttgtcttagggtgaatagtcagaattgcagtatgtgttaccttctcccagGCAGACATTGTGAAAGCCATTGCTCATCTCATTGGGTTATACAAGTATGAAAGCTGTGGTCAGTGTACCCCATGCCGAGAAGgtaaggtatctttaaagcctgttgtgctgttgtaaggctcacaatgctcc Alignment from Pairagon ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG ttgtcttagggtgaatagtcagaattgcagtatgtgttaccttctcccagGCAGACATTGTGAAAGCCATTGCTCATCTCATTGGGTTATACAAGTATGAAAGCTGTGGTCAGTGTACCCCATGCCGAGAAGgtaaggtatctttaaagcctgttgtgctgttgtaaggctcacaatgctcc Alignment from Exonerate_protein2genome ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG ttgtcttagggtgaatagtcagaattgcagtatgtgttaccttctcccagGCAGACATTGTGAAAGCCATTGCTCATCTCATTGGGTTATACAAGTATGAAAGCTGTGGTCAGTGTACCCCATGCCGAGAAGgtaaggtatctttaaagcctgttgtgctgttgtaaggctcacaatgctcc Alignment from Exonerate_coding2genome ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG ttgtcttagggtgaatagtcagaattgcagtatgtgttaccttctcccagGCAGACATTGTGAAAGCCATTGCTCATCTCATTGGGTTATACAAGTATGAAAGCTGTGGTCAGTGTACCCCATGCCGAGAAGgtaaggtatctttaaagcctgttgtgctgttgtaaggctcacaatgctcc Alignment from GeneWise ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG ttgtcttagggtgaatagtcagaattgcagtatgtgttaccttctcccagGCAGACATTGTGAAAGCCATTGCTCATCTCATTGGGTTATACAAGTATGAAAGCTGTGGTCAGTGTACCCCATGCCGAGAAGgtaaggtatctttaaagcctgttgtgctgttgtaaggctcacaatgctcc #### Ndufv1_ID278_4 --> 1 - 0 Original Alignment gCCCAAGTATCTGGTGGTGAATGCTGACGAGGGAGAGCCAGGCACCTGTAAGGACCGAGAGATCATGCGTCATGACCCTCACAAGCTGGTGGAAGGCTGCCTTGTGGGAGGCCGGGCCATGGGAGCCCGGGCCGCCTATATCTACATCCGAGGGGAATTCTACAACGAGGCCTCCAATTTGCAG agctcagttgtcaggggttgtaggtctgatctctccatcaaccgatccaggCCAAGGTACCTGGTGGTAAATGCTGACAAAGGAGAGCCTGACACTTGCAAGGACCGGGATATTATGCGGCATGCCGCTCACAAGCTGGTGGAAGGCTGCCTTGTGGGAGGCCACGCCATGGGGGCACGGGCCACCTATACATACATACGAGGTGAGTTCTACAATGAGGCCTCAAATTTGCAGgtaagtccattatctcttgctggtgttgcacagcttgcctcacctgctat Alignment from CESAR gCCCAAGTATCTGGTGGTGAATGCTGACGAGGGAGAGCCAGGCACCTGTAAGGACCGAGAGATCATGCGTCATGACCCTCACAAGCTGGTGGAAGGCTGCCTTGTGGGAGGCCGGGCCATGGGAGCCCGGGCCGCCTATATCTACATCCGAGGGGAATTCTACAACGAGGCCTCCAATTTGCAG agctcagttgtcaggggttgtaggtctgatctctccatcaaccgatccaggCCAAGGTACCTGGTGGTAAATGCTGACAAAGGAGAGCCTGACACTTGCAAGGACCGGGATATTATGCGGCATGCCGCTCACAAGCTGGTGGAAGGCTGCCTTGTGGGAGGCCACGCCATGGGGGCACGGGCCACCTATACATACATACGAGGTGAGTTCTACAATGAGGCCTCAAATTTGCAGgtaagtccattatctcttgctggtgttgcacagcttgcctcacctgctat Alignment from Spaln_aa2Genome GCCCAAGTATCTGGTGGTGAATGCTGACGAGGGAGAGCCAGGCACCTGTAAGGACCGAGAGATCATGCGTCATGACCCTCACAAGCTGGTGGAAGGCTGCCTTGTGGGAGGCCGGGCCATGGGAGCCCGGGCCGCCTATATCTACATCCGAGGGGAATTCTACAACGAGGCCTCCAATTTGCAG agctcagttgtcaggggttgtaggtctgatctctccatcaaccgatccagGCCAAGGTACCTGGTGGTAAATGCTGACAAAGGAGAGCCTGACACTTGCAAGGACCGGGATATTATGCGGCATGCCGCTCACAAGCTGGTGGAAGGCTGCCTTGTGGGAGGCCACGCCATGGGGGCACGGGCCACCTATACATACATACGAGGTGAGTTCTACAATGAGGCCTCAAATTTGCAGgtaagtccattatctcttgctggtgttgcacagcttgcctcacctgctat Alignment from Spaln_nt2Genome GCCCAAGTATCTGGTGGTGAATGCTGACGAGGGAGAGCCAGGCACCTGTAAGGACCGAGAGATCATGCGTCATGACCCTCACAAGCTGGTGGAAGGCTGCCTTGTGGGAGGCCGGGCCATGGGAGCCCGGGCCGCCTATATCTACATCCGAGGGGAATTCTACAACGAGGCCTCCAATTTGCAG agctcagttgtcaggggttgtaggtctgatctctccatcaaccgatccagGCCAAGGTACCTGGTGGTAAATGCTGACAAAGGAGAGCCTGACACTTGCAAGGACCGGGATATTATGCGGCATGCCGCTCACAAGCTGGTGGAAGGCTGCCTTGTGGGAGGCCACGCCATGGGGGCACGGGCCACCTATACATACATACGAGGTGAGTTCTACAATGAGGCCTCAAATTTGCAGgtaagtccattatctcttgctggtgttgcacagcttgcctcacctgctat Alignment from Pairagon GCCCAAGTATCTGGTGGTGAATGCTGACGAGGGAGAGCCAGGCACCTGTAAGGACCGAGAGATCATGCGTCATGACCCTCACAAGCTGGTGGAAGGCTGCCTTGTGGGAGGCCGGGCCATGGGAGCCCGGGCCGCCTATATCTACATCCGAGGGGAATTCTACAACGAGGCCTCCAATTTGCAG agctcagttgtcaggggttgtaggtctgatctctccatcaaccgatccagGCCAAGGTACCTGGTGGTAAATGCTGACAAAGGAGAGCCTGACACTTGCAAGGACCGGGATATTATGCGGCATGCCGCTCACAAGCTGGTGGAAGGCTGCCTTGTGGGAGGCCACGCCATGGGGGCACGGGCCACCTATACATACATACGAGGTGAGTTCTACAATGAGGCCTCAAATTTGCAGgtaagtccattatctcttgctggtgttgcacagcttgcctcacctgctat Alignment from Exonerate_protein2genome GCCCAAGTATCTGGTGGTGAATGCTGACGAGGGAGAGCCAGGCACCTGTAAGGACCGAGAGATCATGCGTCATGACCCTCACAAGCTGGTGGAAGGCTGCCTTGTGGGAGGCCGGGCCATGGGAGCCCGGGCCGCCTATATCTACATCCGAGGGGAATTCTACAACGAGGCCTCCAATTTGCAG agctcagttgtcaggggttgtaggtctgatctctccatcaaccgatccagGCCAAGGTACCTGGTGGTAAATGCTGACAAAGGAGAGCCTGACACTTGCAAGGACCGGGATATTATGCGGCATGCCGCTCACAAGCTGGTGGAAGGCTGCCTTGTGGGAGGCCACGCCATGGGGGCACGGGCCACCTATACATACATACGAGGTGAGTTCTACAATGAGGCCTCAAATTTGCAGgtaagtccattatctcttgctggtgttgcacagcttgcctcacctgctat Alignment from Exonerate_coding2genome GCCCAAGTATCTGGTGGTGAATGCTGACGAGGGAGAGCCAGGCACCTGTAAGGACCGAGAGATCATGCGTCATGACCCTCACAAGCTGGTGGAAGGCTGCCTTGTGGGAGGCCGGGCCATGGGAGCCCGGGCCGCCTATATCTACATCCGAGGGGAATTCTACAACGAGGCCTCCAATTTGCAG agctcagttgtcaggggttgtaggtctgatctctccatcaaccgatccagGCCAAGGTACCTGGTGGTAAATGCTGACAAAGGAGAGCCTGACACTTGCAAGGACCGGGATATTATGCGGCATGCCGCTCACAAGCTGGTGGAAGGCTGCCTTGTGGGAGGCCACGCCATGGGGGCACGGGCCACCTATACATACATACGAGGTGAGTTCTACAATGAGGCCTCAAATTTGCAGgtaagtccattatctcttgctggtgttgcacagcttgcctcacctgctat Alignment from GeneWise GCCCAAGTATCTGGTGGTGAATGCTGACGAGGGAGAGCCAGGCACCTGTAAGGACCGAGAGATCATGCGTCATGACCCTCACAAGCTGGTGGAAGGCTGCCTTGTGGGAGGCCGGGCCATGGGAGCCCGGGCCGCCTATATCTACATCCGAGGGGAATTCTACAACGAGGCCTCCAATTTGCAG agctcagttgtcaggggttgtaggtctgatctctccatcaaccgatccagGCCAAGGTACCTGGTGGTAAATGCTGACAAAGGAGAGCCTGACACTTGCAAGGACCGGGATATTATGCGGCATGCCGCTCACAAGCTGGTGGAAGGCTGCCTTGTGGGAGGCCACGCCATGGGGGCACGGGCCACCTATACATACATACGAGGTGAGTTCTACAATGAGGCCTCAAATTTGCAGgtaagtccattatctcttgctggtgttgcacagcttgcctcacctgctat #### Ndufv1_ID279_3 --> 1 - 2 Original Alignment gCTGAAAGGTGCCCTGAGACGGGGTGACTGGTACAAGACAAAGGAGATCCTGCTGAAGGGGCCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGGGGCCGTGGTGGTGCTGGCTTCCCCACTGGCCTCAAGTGGAGCTTCATGAATAAGCCCTCAGATGGCag ggcaaggttgagtcacaacttaggcaagctctgtttctgcctccccacagaCTAAAAGATGCCCTAAGACGCGGTGATTGGTATCAGACAAAGGAAATCCTGCTAAAGGGACCTGACTGGATCTTAGGTGAGATGAAGACATCAGGTCTGCGAGGTCGAGGTGGGGCAGGCTTCCCCACAGGTCTCAAGTGGAGCTTTACAAATAAGCCATCGGACAGTaggtatggtgaggagctaaatgttagccttggtttgccacacataaggtccc Alignment from CESAR gCTGAAAGGTGCCCTGAGACGGGGTGACTGGTACAAGACAAAGGAGATCCTGCTGAAGGGGCCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGGGGCCGTGGTGGTGCTGGCTTCCCCACTGGCCTCAAGTGGAGCTTCATGAATAAGCCCTCAGATGGCag gtcaaggttgagtcacaacttaggcaagctctgtttctgcctccccacagaCTAAAAGATGCCCTAAGACGCGGTGATTGGTATCAGACAAAGGAAATCCTGCTAAAGGGACCTGACTGGATCTTAGGTGAGATGAAGACATCAGGTCTGCGAGGTCGAGGTGGGGCAGGCTTCCCCACAGGTCTCAAGTGGAGCTTTACAAATAAGCCATCGGACAGTaggtatggtgaggagctaaatgttagccttggtttgccacacataaggtccc Alignment from Spaln_aa2Genome GCTGAAAGGTGCCCTGAGACGGGGTGACTGGTACAAGACAAAGGAGATCCTGCTGAAGGGGCCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGGGGCCGTGGTGGTGCTGGCTTCCCCACTGGCCTCAAGTGGAGCTTCATGAATAAGCCCTCAGATGGCAG ggcaaggttgagtcacaacttaggcaagctctgtttctgcctccccacagACTAAAAGATGCCCTAAGACGCGGTGATTGGTATCAGACAAAGGAAATCCTGCTAAAGGGACCTGACTGGATCTTAGGTGAGATGAAGACATCAGGTCTGCGAGGTCGAGGTGGGGCAGGCTTCCCCACAGGTCTCAAGTGGAGCTTTACAAATAAGCCATCGGACAGTAGgtatggtgaggagctaaatgttagccttggtttgccacacataaggtccc Alignment from Spaln_nt2Genome GCTGAAAGGTGCCCTGAGACGGGGTGACTGGTACAAGACAAAGGAGATCCTGCTGAAGGGGCCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGGGGCCGTGGTGGTGCTGGCTTCCCCACTGGCCTCAAGTGGAGCTTCATGAATAAGCCCTCAGATGGCAG ggcaaggttgagtcacaacttaggcaagctctgtttctgcctccccacagACTAAAAGATGCCCTAAGACGCGGTGATTGGTATCAGACAAAGGAAATCCTGCTAAAGGGACCTGACTGGATCTTAGGTGAGATGAAGACATCAGGTCTGCGAGGTCGAGGTGGGGCAGGCTTCCCCACAGGTCTCAAGTGGAGCTTTACAAATAAGCCATCGGACAGTAGgtatggtgaggagctaaatgttagccttggtttgccacacataaggtccc Alignment from Pairagon ---------------------------------------------------CTGAAAGGTGCCCTGAGACGGGGTGACTGGTACAAGACAAAGGAGATCCTGCTGAAGGGGCCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGGGGCCGTGGTGGTGCTGGCTTCCCCACTGGCCTCAAGTGGAGCTTCATGAATAAGCCCTCAGATGGCAG GGCAAGGTTGAGTCACAACTTAGGCAAGCTCTGTTTCTGCCTCCCCACAGACTAAAAGATGCCCTAAGACGCGGTGATTGGTATCAGACAAAGGAAATCCTGCTAAAGGGACCTGACTGGATCTTAGGTGAGATGAAGACATCAGGTCTGCGAGGTCGAGGTGGGGCAGGCTTCCCCACAGGTCTCAAGTGGAGCTTTACAAATAAGCCATCGGACAGTAGgtatggtgaggagctaaatgttagccttggtttgccacacataaggtccc Alignment from Exonerate_protein2genome GCTGAAAGGTGCCCTGAGACGGGGTGACTGGTACAAGACAAAGGAGATCCTGCTGAAGGGGCCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGGGGCCGTGGTGGTGCTGGCTTCCCCACTGGCCTCAAGTGGAGCTTCATGAATAAGCCCTCAGATGGCAG ggcaaggttgagtcacaacttaggcaagctctgtttctgcctccccacagACTAAAAGATGCCCTAAGACGCGGTGATTGGTATCAGACAAAGGAAATCCTGCTAAAGGGACCTGACTGGATCTTAGGTGAGATGAAGACATCAGGTCTGCGAGGTCGAGGTGGGGCAGGCTTCCCCACAGGTCTCAAGTGGAGCTTTACAAATAAGCCATCGGACAGTAGgtatggtgaggagctaaatgttagccttggtttgccacacataaggtccc Alignment from Exonerate_coding2genome GCTGAAAGGTGCCCTGAGACGGGGTGACTGGTACAAGACAAAGGAGATCCTGCTGAAGGGGCCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGGGGCCGTGGTGGTGCTGGCTTCCCCACTGGCCTCAAGTGGAGCTTCATGAATAAGCCCTCAGATGGCAG ggcaaggttgagtcacaacttaggcaagctctgtttctgcctccccacagACTAAAAGATGCCCTAAGACGCGGTGATTGGTATCAGACAAAGGAAATCCTGCTAAAGGGACCTGACTGGATCTTAGGTGAGATGAAGACATCAGGTCTGCGAGGTCGAGGTGGGGCAGGCTTCCCCACAGGTCTCAAGTGGAGCTTTACAAATAAGCCATCGGACAGTAGgtatggtgaggagctaaatgttagccttggtttgccacacataaggtccc Alignment from GeneWise ------------------------------------------------AGGCTGAAAGGTGCCCTGAGACGGGGTGACTGGTACAAGACAAAGGAGATCCTGCTGAAGGGGCCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGGGGCCGTGGTGGTGCTGGCTTCCCCACTGGCCTCAAGTGGAGCTTCATGAATAAGCCCTCAGATGGCAG GGCAAGGTTGAGTCACAACTTAGGCAAGCTCTGTTTCTGCCTCCCCACAGACTAAAAGATGCCCTAAGACGCGGTGATTGGTATCAGACAAAGGAAATCCTGCTAAAGGGACCTGACTGGATCTTAGGTGAGATGAAGACATCAGGTCTGCGAGGTCGAGGTGGGGCAGGCTTCCCCACAGGTCTCAAGTGGAGCTTTACAAATAAGCCATCGGACAGTAGgtatggtgaggagctaaatgttagccttggtttgccacacataaggtccc #### Neurl1a_ID10158_3 --> 0 - 1 Original Alignment ATCACCAAGAAGCAATGCTGCTGGAGCGGGGCCCTGCGACTTGGCTTCACCAGCAAGGACCCTTCCCGCATCCACCCCGACTCGCTGCCCAAGTACGCCTGCCCTGACCTGGTGTCTCAGAGTGGCTTCTGGGCCAAAGCATTGCCTGAGGAGTTTGCCAACGAGGGCAACATCATTGCCTTCTGGGTGGACAAGAAGGGCCGCGTCTTCTACCGGATCAATGAGTCAGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACGGTGGACCCGCTCTGGGCCCTGGTGGACGTCTACGGCCTCACGCGGGGTGTCCAGCTGCTAg atttacgctcattaggaggtgagctgtgattctgggtttcgttttcctagATCACCAAGAAGCAATGCTGTTGGAGTGGGGCTCTGCAACTAGGCTTTACAAGCAAGGACCCCTCCCGCATCCACCCTGACTCACTACCCAAGTATGCATGCCCTGATCTAGTATCCCAGAGTGGGTTCTGGGCTAAAGCATTGCCAGAAGAATCTGCCAATGAGGGGAACATTATTGCATTCTGGGTGGACAAGAAAGGCCGTGTCTTCTACCGGATCAATGAGTCAGCTGCTATGCTTTTTTTCAGTGGGGTACGAACAGTAGACCCACTCTGGGACCTTGTGGATGTGTACATCCTTACACGAGGTGTTCAGCTGTTAggtgagttacctgatttttcctggacattgttcaggaagataatgtatact Alignment from CESAR ATCACCAAGAAGCAATGCTGCTGGAGCGGGGCCCTGCGACTTGGCTTCACCAGCAAGGACCCTTCCCGCATCCACCCCGACTCGCTGCCCAAGTACGCCTGCCCTGACCTGGTGTCTCAGAGTGGCTTCTGGGCCAAAGCATTGCCTGAGGAGTTTGCCAACGAGGGCAACATCATTGCCTTCTGGGTGGACAAGAAGGGCCGCGTCTTCTACCGGATCAATGAGTCAGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACGGTGGACCCGCTCTGGGCCCTGGTGGACGTCTACGGCCTCACGCGGGGTGTCCAGCTGCTAg atttacgctcattaggaggtgagctgtgattctgggtttcgttttcctagATCACCAAGAAGCAATGCTGTTGGAGTGGGGCTCTGCAACTAGGCTTTACAAGCAAGGACCCCTCCCGCATCCACCCTGACTCACTACCCAAGTATGCATGCCCTGATCTAGTATCCCAGAGTGGGTTCTGGGCTAAAGCATTGCCAGAAGAATCTGCCAATGAGGGGAACATTATTGCATTCTGGGTGGACAAGAAAGGCCGTGTCTTCTACCGGATCAATGAGTCAGCTGCTATGCTTTTTTTCAGTGGGGTACGAACAGTAGACCCACTCTGGGACCTTGTGGATGTGTACATCCTTACACGAGGTGTTCAGCTGTTAggtgagttacctgatttttcctggacattgttcaggaagataatgtatact Alignment from Spaln_aa2Genome ATCACCAAGAAGCAATGCTGCTGGAGCGGGGCCCTGCGACTTGGCTTCACCAGCAAGGACCCTTCCCGCATCCACCCCGACTCGCTGCCCAAGTACGCCTGCCCTGACCTGGTGTCTCAGAGTGGCTTCTGGGCCAAAGCATTGCCTGAGGAGTTTGCCAACGAGGGCAACATCATTGCCTTCTGGGTGGACAAGAAGGGCCGCGTCTTCTACCGGATCAATGAGTCAGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACGGTGGACCCGCTCTGGGCCCTGGTGGACGTCTACGGCCTCACGCGGGGTGTCCAGCTGCTAG atttacgctcattaggaggtgagctgtgattctgggtttcgttttcctagATCACCAAGAAGCAATGCTGTTGGAGTGGGGCTCTGCAACTAGGCTTTACAAGCAAGGACCCCTCCCGCATCCACCCTGACTCACTACCCAAGTATGCATGCCCTGATCTAGTATCCCAGAGTGGGTTCTGGGCTAAAGCATTGCCAGAAGAATCTGCCAATGAGGGGAACATTATTGCATTCTGGGTGGACAAGAAAGGCCGTGTCTTCTACCGGATCAATGAGTCAGCTGCTATGCTTTTTTTCAGTGGGGTACGAACAGTAGACCCACTCTGGGACCTTGTGGATGTGTACATCCTTACACGAGGTGTTCAGCTGTTAGgtgagttacctgatttttcctggacattgttcaggaagataatgtatact Alignment from Spaln_nt2Genome ATCACCAAGAAGCAATGCTGCTGGAGCGGGGCCCTGCGACTTGGCTTCACCAGCAAGGACCCTTCCCGCATCCACCCCGACTCGCTGCCCAAGTACGCCTGCCCTGACCTGGTGTCTCAGAGTGGCTTCTGGGCCAAAGCATTGCCTGAGGAGTTTGCCAACGAGGGCAACATCATTGCCTTCTGGGTGGACAAGAAGGGCCGCGTCTTCTACCGGATCAATGAGTCAGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACGGTGGACCCGCTCTGGGCCCTGGTGGACGTCTACGGCCTCACGCGGGGTGTCCAGCTGCTAG atttacgctcattaggaggtgagctgtgattctgggtttcgttttcctagATCACCAAGAAGCAATGCTGTTGGAGTGGGGCTCTGCAACTAGGCTTTACAAGCAAGGACCCCTCCCGCATCCACCCTGACTCACTACCCAAGTATGCATGCCCTGATCTAGTATCCCAGAGTGGGTTCTGGGCTAAAGCATTGCCAGAAGAATCTGCCAATGAGGGGAACATTATTGCATTCTGGGTGGACAAGAAAGGCCGTGTCTTCTACCGGATCAATGAGTCAGCTGCTATGCTTTTTTTCAGTGGGGTACGAACAGTAGACCCACTCTGGGACCTTGTGGATGTGTACATCCTTACACGAGGTGTTCAGCTGTTAGgtgagttacctgatttttcctggacattgttcaggaagataatgtatact Alignment from Pairagon ATCACCAAGAAGCAATGCTGCTGGAGCGGGGCCCTGCGACTTGGCTTCACCAGCAAGGACCCTTCCCGCATCCACCCCGACTCGCTGCCCAAGTACGCCTGCCCTGACCTGGTGTCTCAGAGTGGCTTCTGGGCCAAAGCATTGCCTGAGGAGTTTGCCAACGAGGGCAACATCATTGCCTTCTGGGTGGACAAGAAGGGCCGCGTCTTCTACCGGATCAATGAGTCAGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACGGTGGACCCGCTCTGGGCCCTGGTGGACGTCTACGGCCTCACGCGGGGTGTCCAGCTGCTAG atttacgctcattaggaggtgagctgtgattctgggtttcgttttcctagATCACCAAGAAGCAATGCTGTTGGAGTGGGGCTCTGCAACTAGGCTTTACAAGCAAGGACCCCTCCCGCATCCACCCTGACTCACTACCCAAGTATGCATGCCCTGATCTAGTATCCCAGAGTGGGTTCTGGGCTAAAGCATTGCCAGAAGAATCTGCCAATGAGGGGAACATTATTGCATTCTGGGTGGACAAGAAAGGCCGTGTCTTCTACCGGATCAATGAGTCAGCTGCTATGCTTTTTTTCAGTGGGGTACGAACAGTAGACCCACTCTGGGACCTTGTGGATGTGTACATCCTTACACGAGGTGTTCAGCTGTTAGgtgagttacctgatttttcctggacattgttcaggaagataatgtatact Alignment from Exonerate_protein2genome ATCACCAAGAAGCAATGCTGCTGGAGCGGGGCCCTGCGACTTGGCTTCACCAGCAAGGACCCTTCCCGCATCCACCCCGACTCGCTGCCCAAGTACGCCTGCCCTGACCTGGTGTCTCAGAGTGGCTTCTGGGCCAAAGCATTGCCTGAGGAGTTTGCCAACGAGGGCAACATCATTGCCTTCTGGGTGGACAAGAAGGGCCGCGTCTTCTACCGGATCAATGAGTCAGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACGGTGGACCCGCTCTGGGCCCTGGTGGACGTCTACGGCCTCACGCGGGGTGTCCAGCTGCTAG atttacgctcattaggaggtgagctgtgattctgggtttcgttttcctagATCACCAAGAAGCAATGCTGTTGGAGTGGGGCTCTGCAACTAGGCTTTACAAGCAAGGACCCCTCCCGCATCCACCCTGACTCACTACCCAAGTATGCATGCCCTGATCTAGTATCCCAGAGTGGGTTCTGGGCTAAAGCATTGCCAGAAGAATCTGCCAATGAGGGGAACATTATTGCATTCTGGGTGGACAAGAAAGGCCGTGTCTTCTACCGGATCAATGAGTCAGCTGCTATGCTTTTTTTCAGTGGGGTACGAACAGTAGACCCACTCTGGGACCTTGTGGATGTGTACATCCTTACACGAGGTGTTCAGCTGTTAGgtgagttacctgatttttcctggacattgttcaggaagataatgtatact Alignment from Exonerate_coding2genome ATCACCAAGAAGCAATGCTGCTGGAGCGGGGCCCTGCGACTTGGCTTCACCAGCAAGGACCCTTCCCGCATCCACCCCGACTCGCTGCCCAAGTACGCCTGCCCTGACCTGGTGTCTCAGAGTGGCTTCTGGGCCAAAGCATTGCCTGAGGAGTTTGCCAACGAGGGCAACATCATTGCCTTCTGGGTGGACAAGAAGGGCCGCGTCTTCTACCGGATCAATGAGTCAGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACGGTGGACCCGCTCTGGGCCCTGGTGGACGTCTACGGCCTCACGCGGGGTGTCCAGCTGCTAG atttacgctcattaggaggtgagctgtgattctgggtttcgttttcctagATCACCAAGAAGCAATGCTGTTGGAGTGGGGCTCTGCAACTAGGCTTTACAAGCAAGGACCCCTCCCGCATCCACCCTGACTCACTACCCAAGTATGCATGCCCTGATCTAGTATCCCAGAGTGGGTTCTGGGCTAAAGCATTGCCAGAAGAATCTGCCAATGAGGGGAACATTATTGCATTCTGGGTGGACAAGAAAGGCCGTGTCTTCTACCGGATCAATGAGTCAGCTGCTATGCTTTTTTTCAGTGGGGTACGAACAGTAGACCCACTCTGGGACCTTGTGGATGTGTACATCCTTACACGAGGTGTTCAGCTGTTAGgtgagttacctgatttttcctggacattgttcaggaagataatgtatact Alignment from GeneWise ATCACCAAGAAGCAATGCTGCTGGAGCGGGGCCCTGCGACTTGGCTTCACCAGCAAGGACCCTTCCCGCATCCACCCCGACTCGCTGCCCAAGTACGCCTGCCCTGACCTGGTGTCTCAGAGTGGCTTCTGGGCCAAAGCATTGCCTGAGGAGTTTGCCAACGAGGGCAACATCATTGCCTTCTGGGTGGACAAGAAGGGCCGCGTCTTCTACCGGATCAATGAGTCAGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACGGTGGACCCGCTCTGGGCCCTGGTGGACGTCTACGGCCTCACGCGGGGTGTCCAGCTGCTAG atttacgctcattaggaggtgagctgtgattctgggtttcgttttcctagATCACCAAGAAGCAATGCTGTTGGAGTGGGGCTCTGCAACTAGGCTTTACAAGCAAGGACCCCTCCCGCATCCACCCTGACTCACTACCCAAGTATGCATGCCCTGATCTAGTATCCCAGAGTGGGTTCTGGGCTAAAGCATTGCCAGAAGAATCTGCCAATGAGGGGAACATTATTGCATTCTGGGTGGACAAGAAAGGCCGTGTCTTCTACCGGATCAATGAGTCAGCTGCTATGCTTTTTTTCAGTGGGGTACGAACAGTAGACCCACTCTGGGACCTTGTGGATGTGTACATCCTTACACGAGGTGTTCAGCTGTTAGgtgagttacctgatttttcctggacattgttcaggaagataatgtatact #### Neurl1a_ID10161_4 --> 2 - 1 Original Alignment acAGCGAGCTGGTGCTGCCCGACTGCCTGCGGCCGCGCTCC---TTCACCGCGCTGCGGCGGCCGTCGCTGCGGTGCGAGGCGGATGAGGCGCGCCTGTCGGTGAGCCTGTGCGACCTCAACGTGCCGGGAGCCGACGGCGACGACGGCGCACCGCCTGCCGGCTGCCCGATCCCGCAG------------AACTCGCTCAATTCTCAGCACAGCCGCGCGCTGCCGGCGCAGCTCGACGGCGACCTGCGCTTCCACGCGCTTCGCGCCGGCGCGCACGTCCGCATCCTGGACGAGCAGACGGTGGCGCGCCTGGAGCACGGGCGCGACGAGCGCGCGCTCGTCTTCACCAGCCGGCCTGTGCGCGTGGCCGAGACCATCTTCATCAAGGTCACGCGCTCGGGCGGGGGGCGAGCGGGCGCGCTGTCCTTCGGGGTCACCACGTGTGACCCTGGCACGCTGCGGCCCGCCGACCTGCCCTTCAGCCCCGAGGCCCTGGTGGACCGCAAGGAGTTCTGGGCGGTGTGTCGCGTGCCCGGGCCTCTGCACAGCGGCGACATCCTGGGCCTGGTGGTCAACGCGGACGGAGAGCTGCACCTGAGTCACAACGGCGCGGCGGCCGGCATGCAGCTGTGCGTGGATGCCTCGCAGCCCCTCTGGATGCTCTTCAGCCTGCATGGCGCCATCACGCAGGTCCGCATCCTCg aataatattttggtgcagaatatgaccactcctcctccttctgtccccagacAGTAAATCAGTGCTCCCTGGCTGTCTGCAGCCACATTCTTCATTTACCACTTTGTGGCAACCATCATTGCGGTGTGAGGCAGATAATGCCCACCTTTTAGTGAGCCTTTGTAGTCTCAATGTGCCAGGAGCTGATAGTGATGATGGTACAGCCCCTGCTGGTTGCCCAATCCAACATCCCATCCCACAGAACCTATCAAACTCACATTACACCCATGCACTCCCAGCCCAGCTTGATGGTGACCCACACTTCCATGCTCTTTGCACAGGTGCAGATGTCCGCATTCTTGATGATCAAACAGTGCCACACCTGAAACATGGGTGTGATGAGCACATGCTTGTATTCACCAGTAGGCCGGTGCATGTTGCTGAGACCATATTCATTAAGGTAGTCCACTCTGGTGGTGGGCAAGCTGGTTCACTATCCTTTGAGGTTACCACATGTGACCCTGGCACCTTGCAGCCTGCTGGCCTCCCCTCTAGCCCTGAC---CTTGTAGACCGCAAGGAACTCTGGGCAGTTTGTCGTGTGCCTGGGCCACTACACAGTGGTGAGATTTTGGGCCTTGTGGTCAACATGGATGGTGGGCTTGACTTGAGTCATAATGGTGCAACACCAGGTATGCAACTGTGTGTAGATGCCTCACAACCCCTTCTGATGTTGTTCAGGTTGCATGGAACCATTACACAAGTCCATGTTCTTggtgagtgatctggttccaagcccaagctccagtcacagaataataatgtc Alignment from CESAR acAGCGAGCTGGTGCTGCCCGACTGCCTGCGGCCGCGCTCC---TTCACCGCGCTGCGGCGGCCGTCGCTGCGGTGCGAGGCGGATGAGGCGCGCCTGTCGGTGAGCCTGTGCGACCTCAACGTGCCGGGAGCCGACGGCGACGACGGCGCACCGCCTGCCGGCTGCCCGATC------------CCGCAGAACTCGCTCAATTCTCAGCACAGCCGCGCGCTGCCGGCGCAGCTCGACGGCGACCTGCGCTTCCACGCGCTTCGCGCCGGCGCGCACGTCCGCATCCTGGACGAGCAGACGGTGGCGCGCCTGGAGCACGGGCGCGACGAGCGCGCGCTCGTCTTCACCAGCCGGCCTGTGCGCGTGGCCGAGACCATCTTCATCAAGGTCACGCGCTCGGGCGGGGGGCGAGCGGGCGCGCTGTCCTTCGGGGTCACCACGTGTGACCCTGGCACGCTGCGGCCCGCCGACCTGCCCTTCAGCCCCGAGGCCCTGGTGGACCGCAAGGAGTTCTGGGCGGTGTGTCGCGTGCCCGGGCCTCTGCACAGCGGCGACATCCTGGGCCTGGTGGTCAACGCGGACGGAGAGCTGCACCTGAGTCACAACGGCGCGGCGGCCGGCATGCAGCTGTGCGTGGATGCCTCGCAGCCCCTCTGGATGCTCTTCAGCCTGCATGGCGCCATCACGCAGGTCCGCATCCTCg aataatattttggtgcagaatatgaccactcctcctccttctgtccccagacAGTAAATCAGTGCTCCCTGGCTGTCTGCAGCCACATTCTTCATTTACCACTTTGTGGCAACCATCATTGCGGTGTGAGGCAGATAATGCCCACCTTTTAGTGAGCCTTTGTAGTCTCAATGTGCCAGGAGCTGATAGTGATGATGGTACAGCCCCTGCTGGTTGCCCAATCCAACATCCCATCCCACAGAACCTATCAAACTCACATTACACCCATGCACTCCCAGCCCAGCTTGATGGTGACCCACACTTCCATGCTCTTTGCACAGGTGCAGATGTCCGCATTCTTGATGATCAAACAGTGCCACACCTGAAACATGGGTGTGATGAGCACATGCTTGTATTCACCAGTAGGCCGGTGCATGTTGCTGAGACCATATTCATTAAGGTAGTCCACTCTGGTGGTGGGCAAGCTGGTTCACTATCCTTTGAGGTTACCACATGTGACCCTGGCACCTTGCAGCCTGCTGGCCTCCCCTCTAGCCCTGAC---CTTGTAGACCGCAAGGAACTCTGGGCAGTTTGTCGTGTGCCTGGGCCACTACACAGTGGTGAGATTTTGGGCCTTGTGGTCAACATGGATGGTGGGCTTGACTTGAGTCATAATGGTGCAACACCAGGTATGCAACTGTGTGTAGATGCCTCACAACCCCTTCTGATGTTGTTCAGGTTGCATGGAACCATTACACAAGTCCATGTTCTTggtgagtgatctggttccaagcccaagctccagtcacagaataataatgtc Alignment from Spaln_aa2Genome ACAGCGAGCTGGTGCTGCCCGACTGCCTGCGGCCGCGC---TCCTTCACCGCGCTGCGGCGGCCGTCGCTGCGGTGCGAGGCGGATGAGGCGCGCCTGTCGGTGAGCCTGTGCGACCTCAACGTGCCGGGAGCCGACGGCGACGACGGCGCACCGCCTGCCGGCTGC------------CCGATCCCGCAGAACTCGCTCAATTCTCAGCACAGCCGCGCGCTGCCGGCGCAGCTCGACGGCGACCTGCGCTTCCACGCGCTTCGCGCCGGCGCGCACGTCCGCATCCTGGACGAGCAGACGGTGGCGCGCCTGGAGCACGGGCGCGACGAGCGCGCGCTCGTCTTCACCAGCCGGCCTGTGCGCGTGGCCGAGACCATCTTCATCAAGGTCACGCGCTCGGGCGGGGGGCGAGCGGGCGCGCTGTCCTTCGGGGTCACCACGTGTGACCCTGGCACGCTGCGGCCCGCCGACCTGCCCTTCAGCCCCGAGGCCCTGGTGGACCGCAAGGAGTTCTGGGCGGTGTGTCGCGTGCCCGGGCCTCTGCACAGCGGCGACATCCTGGGCCTGGTGGTCAACGCGGACGGAGAGCTGCACCTGAGTCACAACGGCGCGGCGGCCGGCATGCAGCTGTGCGTGGATGCCTCGCAGCCCCTCTGGATGCTCTTCAGCCTGCATGGCGCCATCACGCAGGTCCGCATCCTCG aataatattttggtgcagaatatgaccactcctcctccttctgtccccagACAGTAAATCAGTGCTCCCTGGCTGTCTGCAGCCACATTCTTCATTTACCACTTTGTGGCAACCATCATTGCGGTGTGAGGCAGATAATGCCCACCTTTTAGTGAGCCTTTGTAGTCTCAATGTGCCAGGAGCTGATAGTGATGATGGTACAGCCCCTGCTGGTTGCCCAATCCAACATCCCATCCCACAGAACCTATCAAACTCACATTACACCCATGCACTCCCAGCCCAGCTTGATGGTGACCCACACTTCCATGCTCTTTGCACAGGTGCAGATGTCCGCATTCTTGATGATCAAACAGTGCCACACCTGAAACATGGGTGTGATGAGCACATGCTTGTATTCACCAGTAGGCCGGTGCATGTTGCTGAGACCATATTCATTAAGGTAGTCCACTCTGGTGGTGGGCAAGCTGGTTCACTATCCTTTGAGGTTACCACATGTGACCCTGGCACCTTGCAGCCTGCTGGCCTCCCCTCTAGCCCTGAC---CTTGTAGACCGCAAGGAACTCTGGGCAGTTTGTCGTGTGCCTGGGCCACTACACAGTGGTGAGATTTTGGGCCTTGTGGTCAACATGGATGGTGGGCTTGACTTGAGTCATAATGGTGCAACACCAGGTATGCAACTGTGTGTAGATGCCTCACAACCCCTTCTGATGTTGTTCAGGTTGCATGGAACCATTACACAAGTCCATGTTCTTGgtgagtgatctggttccaagcccaagctccagtcacagaataataatgtc Alignment from Spaln_nt2Genome ACAGCGAGCTGGTGCTGCCCGACTGCCTGCGGCCGCGCTCCT---TCACCGCGCTGCGGCGGCCGTCGCTGCGGTGCGAGGCGGATGAGGCGCGCCTGTCGGTGAGCCTGTGCGACCTCAACGTGCCGGGAGCCGACGGCGACGACGGCGCACCGCCTGCCGGCTGCCCGATCC------------CGCAGAACTCGCTCAATTCTCAGCACAGCCGCGCGCTGCCGGCGCAGCTCGACGGCGACCTGCGCTTCCACGCGCTTCGCGCCGGCGCGCACGTCCGCATCCTGGACGAGCAGACGGTGGCGCGCCTGGAGCACGGGCGCGACGAGCGCGCGCTCGTCTTCACCAGCCGGCCTGTGCGCGTGGCCGAGACCATCTTCATCAAGGTCACGCGCTCGGGCGGGGGGCGAGCGGGCGCGCTGTCCTTCGGGGTCACCACGTGTGACCCTGGCACGCTGCGGCCCGCCGACCTGCCCTTCAGCCCCGAGGCCCTGGTGGACCGCAAGGAGTTCTGGGCGGTGTGTCGCGTGCCCGGGCCTCTGCACAGCGGCGACATCCTGGGCCTGGTGGTCAACGCGGACGGAGAGCTGCACCTGAGTCACAACGGCGCGGCGGCCGGCATGCAGCTGTGCGTGGATGCCTCGCAGCCCCTCTGGATGCTCTTCAGCCTGCATGGCGCCATCACGCAGGTCCGCATCCTCG aataatattttggtgcagaatatgaccactcctcctccttctgtccccagACAGTAAATCAGTGCTCCCTGGCTGTCTGCAGCCACATTCTTCATTTACCACTTTGTGGCAACCATCATTGCGGTGTGAGGCAGATAATGCCCACCTTTTAGTGAGCCTTTGTAGTCTCAATGTGCCAGGAGCTGATAGTGATGATGGTACAGCCCCTGCTGGTTGCCCAATCCAACATCCCATCCCACAGAACCTATCAAACTCACATTACACCCATGCACTCCCAGCCCAGCTTGATGGTGACCCACACTTCCATGCTCTTTGCACAGGTGCAGATGTCCGCATTCTTGATGATCAAACAGTGCCACACCTGAAACATGGGTGTGATGAGCACATGCTTGTATTCACCAGTAGGCCGGTGCATGTTGCTGAGACCATATTCATTAAGGTAGTCCACTCTGGTGGTGGGCAAGCTGGTTCACTATCCTTTGAGGTTACCACATGTGACCCTGGCACCTTGCAGCCTGCTGGCCTCCCCTCTAGCCCTGA---CCTTGTAGACCGCAAGGAACTCTGGGCAGTTTGTCGTGTGCCTGGGCCACTACACAGTGGTGAGATTTTGGGCCTTGTGGTCAACATGGATGGTGGGCTTGACTTGAGTCATAATGGTGCAACACCAGGTATGCAACTGTGTGTAGATGCCTCACAACCCCTTCTGATGTTGTTCAGGTTGCATGGAACCATTACACAAGTCCATGTTCTTGgtgagtgatctggttccaagcccaagctccagtcacagaataataatgtc Alignment from Pairagon ACAGCGAGCTGGTGCTGCCCGACTGCCTGCGGCCGCGCTCC---TTCACCGCGCTGCGGCGGCCGTCGCTGCGGTGCGAGGCGGATGAGGCGCGCCTGTCGGTGAGCCTGTGCGACCTCAACGTGCCGGGAGCCGACGGCGACGACGGCGCACCGCCTGCCGGCTGCCCG------------ATCCCGCAGAACTCGCTCAATTCTCAGCACAGCCGCGCGCTGCCGGCGCAGCTCGACGGCGACCTGCGCTTCCACGCGCTTCGCGCCGGCGCGCACGTCCGCATCCTGGACGAGCAGACGGTGGCGCGCCTGGAGCACGGGCGCGACGAGCGCGCGCTCGTCTTCACCAGCCGGCCTGTGCGCGTGGCCGAGACCATCTTCATCAAGGTCACGCGCTCGGGCGGGGGGCGAGCGGGCGCGCTGTCCTTCGGGGTCACCACGTGTGACCCTGGCACGCTGCGGCCCGCCGACCTGCCCTTCAGCCCCGAGGCCCTGGTGGACCGCAAGGAGTTCTGGGCGGTGTGTCGCGTGCCCGGGCCTCTGCACAGCGGCGACATCCTGGGCCTGGTGGTCAACGCGGACGGAGAGCTGCACCTGAGTCACAACGGCGCGGCGGCCGGCATGCAGCTGTGCGTGGATGCCTCGCAGCCCCTCTGGATGCTCTTCAGCCTGCATGGCGCCATCACGCAGGTCCGCATCCTCG aataatattttggtgcagaatatgaccactcctcctccttctgtccccagACAGTAAATCAGTGCTCCCTGGCTGTCTGCAGCCACATTCTTCATTTACCACTTTGTGGCAACCATCATTGCGGTGTGAGGCAGATAATGCCCACCTTTTAGTGAGCCTTTGTAGTCTCAATGTGCCAGGAGCTGATAGTGATGATGGTACAGCCCCTGCTGGTTGCCCAATCCAACATCCCATCCCACAGAACCTATCAAACTCACATTACACCCATGCACTCCCAGCCCAGCTTGATGGTGACCCACACTTCCATGCTCTTTGCACAGGTGCAGATGTCCGCATTCTTGATGATCAAACAGTGCCACACCTGAAACATGGGTGTGATGAGCACATGCTTGTATTCACCAGTAGGCCGGTGCATGTTGCTGAGACCATATTCATTAAGGTAGTCCACTCTGGTGGTGGGCAAGCTGGTTCACTATCCTTTGAGGTTACCACATGTGACCCTGGCACCTTGCAGCCTGCTGGCCTCCCCTCTAGCCCTGA---CCTTGTAGACCGCAAGGAACTCTGGGCAGTTTGTCGTGTGCCTGGGCCACTACACAGTGGTGAGATTTTGGGCCTTGTGGTCAACATGGATGGTGGGCTTGACTTGAGTCATAATGGTGCAACACCAGGTATGCAACTGTGTGTAGATGCCTCACAACCCCTTCTGATGTTGTTCAGGTTGCATGGAACCATTACACAAGTCCATGTTCTTGgtgagtgatctggttccaagcccaagctccagtcacagaataataatgtc Alignment from Exonerate_protein2genome ACAGCGAGCTGGTGCTGCCCGACTGCCTGCGGCCGCGC---TCCTTCACCGCGCTGCGGCGGCCGTCGCTGCGGTGCGAGGCGGATGAGGCGCGCCTGTCGGTGAGCCTGTGCGACCTCAACGTGCCGGGAGCCGACGGCGACGACGGCGCACCGCCTGCCGGCTGC------------CCGATCCCGCAGAACTCGCTCAATTCTCAGCACAGCCGCGCGCTGCCGGCGCAGCTCGACGGCGACCTGCGCTTCCACGCGCTTCGCGCCGGCGCGCACGTCCGCATCCTGGACGAGCAGACGGTGGCGCGCCTGGAGCACGGGCGCGACGAGCGCGCGCTCGTCTTCACCAGCCGGCCTGTGCGCGTGGCCGAGACCATCTTCATCAAGGTCACGCGCTCGGGCGGGGGGCGAGCGGGCGCGCTGTCCTTCGGGGTCACCACGTGTGACCCTGGCACGCTGCGGCCCGCCGACCTGCCCTTCAGCCCCGAGGCCCTGGTGGACCGCAAGGAGTTCTGGGCGGTGTGTCGCGTGCCCGGGCCTCTGCACAGCGGCGACATCCTGGGCCTGGTGGTCAACGCGGACGGAGAGCTGCACCTGAGTCACAACGGCGCGGCGGCCGGCATGCAGCTGTGCGTGGATGCCTCGCAGCCCCTCTGGATGCTCTTCAGCCTGCATGGCGCCATCACGCAGGTCCGCATCCTCG aataatattttggtgcagaatatgaccactcctcctccttctgtccccagACAGTAAATCAGTGCTCCCTGGCTGTCTGCAGCCACATTCTTCATTTACCACTTTGTGGCAACCATCATTGCGGTGTGAGGCAGATAATGCCCACCTTTTAGTGAGCCTTTGTAGTCTCAATGTGCCAGGAGCTGATAGTGATGATGGTACAGCCCCTGCTGGTTGCCCAATCCAACATCCCATCCCACAGAACCTATCAAACTCACATTACACCCATGCACTCCCAGCCCAGCTTGATGGTGACCCACACTTCCATGCTCTTTGCACAGGTGCAGATGTCCGCATTCTTGATGATCAAACAGTGCCACACCTGAAACATGGGTGTGATGAGCACATGCTTGTATTCACCAGTAGGCCGGTGCATGTTGCTGAGACCATATTCATTAAGGTAGTCCACTCTGGTGGTGGGCAAGCTGGTTCACTATCCTTTGAGGTTACCACATGTGACCCTGGCACCTTGCAGCCTGCTGGCCTCCCCTCTAGCCCTGAC---CTTGTAGACCGCAAGGAACTCTGGGCAGTTTGTCGTGTGCCTGGGCCACTACACAGTGGTGAGATTTTGGGCCTTGTGGTCAACATGGATGGTGGGCTTGACTTGAGTCATAATGGTGCAACACCAGGTATGCAACTGTGTGTAGATGCCTCACAACCCCTTCTGATGTTGTTCAGGTTGCATGGAACCATTACACAAGTCCATGTTCTTGgtgagtgatctggttccaagcccaagctccagtcacagaataataatgtc Alignment from Exonerate_coding2genome ACAGCGAGCTGGTGCTGCCCGACTGCCTGCGGCCGCGC---TCCTTCACCGCGCTGCGGCGGCCGTCGCTGCGGTGCGAGGCGGATGAGGCGCGCCTGTCGGTGAGCCTGTGCGACCTCAACGTGCCGGGAGCCGACGGCGACGACGGCGCACCGCCTGCCGGCTGC------------CCGATCCCGCAGAACTCGCTCAATTCTCAGCACAGCCGCGCGCTGCCGGCGCAGCTCGACGGCGACCTGCGCTTCCACGCGCTTCGCGCCGGCGCGCACGTCCGCATCCTGGACGAGCAGACGGTGGCGCGCCTGGAGCACGGGCGCGACGAGCGCGCGCTCGTCTTCACCAGCCGGCCTGTGCGCGTGGCCGAGACCATCTTCATCAAGGTCACGCGCTCGGGCGGGGGGCGAGCGGGCGCGCTGTCCTTCGGGGTCACCACGTGTGACCCTGGCACGCTGCGGCCCGCCGACCTGCCCTTCAGCCCCGAGGCCCTGGTGGACCGCAAGGAGTTCTGGGCGGTGTGTCGCGTGCCCGGGCCTCTGCACAGCGGCGACATCCTGGGCCTGGTGGTCAACGCGGACGGAGAGCTGCACCTGAGTCACAACGGCGCGGCGGCCGGCATGCAGCTGTGCGTGGATGCCTCGCAGCCCCTCTGGATGCTCTTCAGCCTGCATGGCGCCATCACGCAGGTCCGCATCCTCG aataatattttggtgcagaatatgaccactcctcctccttctgtccccagACAGTAAATCAGTGCTCCCTGGCTGTCTGCAGCCACATTCTTCATTTACCACTTTGTGGCAACCATCATTGCGGTGTGAGGCAGATAATGCCCACCTTTTAGTGAGCCTTTGTAGTCTCAATGTGCCAGGAGCTGATAGTGATGATGGTACAGCCCCTGCTGGTTGCCCAATCCAACATCCCATCCCACAGAACCTATCAAACTCACATTACACCCATGCACTCCCAGCCCAGCTTGATGGTGACCCACACTTCCATGCTCTTTGCACAGGTGCAGATGTCCGCATTCTTGATGATCAAACAGTGCCACACCTGAAACATGGGTGTGATGAGCACATGCTTGTATTCACCAGTAGGCCGGTGCATGTTGCTGAGACCATATTCATTAAGGTAGTCCACTCTGGTGGTGGGCAAGCTGGTTCACTATCCTTTGAGGTTACCACATGTGACCCTGGCACCTTGCAGCCTGCTGGCCTCCCCTCTAGCCCTGAC---CTTGTAGACCGCAAGGAACTCTGGGCAGTTTGTCGTGTGCCTGGGCCACTACACAGTGGTGAGATTTTGGGCCTTGTGGTCAACATGGATGGTGGGCTTGACTTGAGTCATAATGGTGCAACACCAGGTATGCAACTGTGTGTAGATGCCTCACAACCCCTTCTGATGTTGTTCAGGTTGCATGGAACCATTACACAAGTCCATGTTCTTGgtgagtgatctggttccaagcccaagctccagtcacagaataataatgtc Alignment from GeneWise ACAGCGAGCTGGTGCTGCCCGACTGCCTGCGGCCGCGCTCC---TTCACCGCGCTGCGGCGGCCGTCGCTGCGGTGCGAGGCGGATGAGGCGCGCCTGTCGGTGAGCCTGTGCGACCTCAACGTGCCGGGAGCCGACGGCGACGACGGCGCACCGCCTGCCGGCTGC------------CCGATCCCGCAGAACTCGCTCAATTCTCAGCACAGCCGCGCGCTGCCGGCGCAGCTCGACGGCGACCTGCGCTTCCACGCGCTTCGCGCCGGCGCGCACGTCCGCATCCTGGACGAGCAGACGGTGGCGCGCCTGGAGCACGGGCGCGACGAGCGCGCGCTCGTCTTCACCAGCCGGCCTGTGCGCGTGGCCGAGACCATCTTCATCAAGGTCACGCGCTCGGGCGGGGGGCGAGCGGGCGCGCTGTCCTTCGGGGTCACCACGTGTGACCCTGGCACGCTGCGGCCCGCCGACCTGCCCTTCAGCCCCGAGGCCCTGGTGGACCGCAAGGAGTTCTGGGCGGTGTGTCGCGTGCCCGGGCCTCTGCACAGCGGCGACATCCTGGGCCTGGTGGTCAACGCGGACGGAGAGCTGCACCTGAGTCACAACGGCGCGGCGGCCGGCATGCAGCTGTGCGTGGATGCCTCGCAGCCCCTCTGGATGCTCTTCAGCCTGCATGGCGCCATCACGCAGGTCCGCATCCTCG aataatattttggtgcagaatatgaccactcctcctccttctgtccccagACAGTAAATCAGTGCTCCCTGGCTGTCTGCAGCCACATTCTTCATTTACCACTTTGTGGCAACCATCATTGCGGTGTGAGGCAGATAATGCCCACCTTTTAGTGAGCCTTTGTAGTCTCAATGTGCCAGGAGCTGATAGTGATGATGGTACAGCCCCTGCTGGTTGCCCAATCCAACATCCCATCCCACAGAACCTATCAAACTCACATTACACCCATGCACTCCCAGCCCAGCTTGATGGTGACCCACACTTCCATGCTCTTTGCACAGGTGCAGATGTCCGCATTCTTGATGATCAAACAGTGCCACACCTGAAACATGGGTGTGATGAGCACATGCTTGTATTCACCAGTAGGCCGGTGCATGTTGCTGAGACCATATTCATTAAGGTAGTCCACTCTGGTGGTGGGCAAGCTGGTTCACTATCCTTTGAGGTTACCACATGTGACCCTGGCACCTTGCAGCCTGCTGGCCTCCCCTCTAGCCCTGAC---CTTGTAGACCGCAAGGAACTCTGGGCAGTTTGTCGTGTGCCTGGGCCACTACACAGTGGTGAGATTTTGGGCCTTGTGGTCAACATGGATGGTGGGCTTGACTTGAGTCATAATGGTGCAACACCAGGTATGCAACTGTGTGTAGATGCCTCACAACCCCTTCTGATGTTGTTCAGGTTGCATGGAACCATTACACAAGTCCATGTTCTTGgtgagtgatctggttccaagcccaagctccagtcacagaataataatgtc #### Nfkb2_ID9829_7 --> 2 - 1 Original Alignment agGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCa agggcaatttattacttgccctacccataacttattctttctttttttagagGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATTTGAGCATTGTACGGCTACGCTTCTCTGCTTTCCTTAGGGCCAGTGATGGTTCTTTCTCCTTACCCCTAAAGCCTGTAATCTCTCAACCAATCCATGATAGCagtgagtctgcacaaacataagcgataagatttcaggtaaaagatcggttt Alignment from CESAR agGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCa agggcaatttattacttgccctacccataacttattctttctttttttagagGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATTTGAGCATTGTACGGCTACGCTTCTCTGCTTTCCTTAGGGCCAGTGATGGTTCTTTCTCCTTACCCCTAAAGCCTGTAATCTCTCAACCAATCCATGATAGCagtgagtctgcacaaacataagcgataagatttcaggtaaaagatcggttt Alignment from Spaln_aa2Genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA agggcaatttattacttgccctacccataacttattctttctttttttagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATTTGAGCATTGTACGGCTACGCTTCTCTGCTTTCCTTAGGGCCAGTGATGGTTCTTTCTCCTTACCCCTAAAGCCTGTAATCTCTCAACCAATCCATGATAGCAgtgagtctgcacaaacataagcgataagatttcaggtaaaagatcggttt Alignment from Spaln_nt2Genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA agggcaatttattacttgccctacccataacttattctttctttttttagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATTTGAGCATTGTACGGCTACGCTTCTCTGCTTTCCTTAGGGCCAGTGATGGTTCTTTCTCCTTACCCCTAAAGCCTGTAATCTCTCAACCAATCCATGATAGCAgtgagtctgcacaaacataagcgataagatttcaggtaaaagatcggttt Alignment from Pairagon AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA agggcaatttattacttgccctacccataacttattctttctttttttagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATTTGAGCATTGTACGGCTACGCTTCTCTGCTTTCCTTAGGGCCAGTGATGGTTCTTTCTCCTTACCCCTAAAGCCTGTAATCTCTCAACCAATCCATGATAGCAgtgagtctgcacaaacataagcgataagatttcaggtaaaagatcggttt Alignment from Exonerate_protein2genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA agggcaatttattacttgccctacccataacttattctttctttttttagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATTTGAGCATTGTACGGCTACGCTTCTCTGCTTTCCTTAGGGCCAGTGATGGTTCTTTCTCCTTACCCCTAAAGCCTGTAATCTCTCAACCAATCCATGATAGCAgtgagtctgcacaaacataagcgataagatttcaggtaaaagatcggttt Alignment from Exonerate_coding2genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA agggcaatttattacttgccctacccataacttattctttctttttttagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATTTGAGCATTGTACGGCTACGCTTCTCTGCTTTCCTTAGGGCCAGTGATGGTTCTTTCTCCTTACCCCTAAAGCCTGTAATCTCTCAACCAATCCATGATAGCAgtgagtctgcacaaacataagcgataagatttcaggtaaaagatcggttt Alignment from GeneWise AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA agggcaatttattacttgccctacccataacttattctttctttttttagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATTTGAGCATTGTACGGCTACGCTTCTCTGCTTTCCTTAGGGCCAGTGATGGTTCTTTCTCCTTACCCCTAAAGCCTGTAATCTCTCAACCAATCCATGATAGCAgtgagtctgcacaaacataagcgataagatttcaggtaaaagatcggttt #### Nfkb2_ID9830_8 --> 2 - 1 Original Alignment agTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAg agattgtcacctgcaagtcaatcaagctctcactgtctctttggttgcagaaTCTTCAGGGGCCTTGAATTTGAAGATCTCTGAGATGGATAAGGCAGCTGGGTCAGTGCAGGGGGGAGATGAGGTTTATTTGCTCTGTGAGAGGGTGCAAAGGggtcagtgcgtgtctaggcaagttctattttggcaggctgtaatggtgaaa Alignment from CESAR agTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAg agattgtcacctgcaagtcaatcaagctctcactgtctctttggttgcagaaTCTTCAGGGGCCTTGAATTTGAAGATCTCTGAGATGGATAAGGCAGCTGGGTCAGTGCAGGGGGGAGATGAGGTTTATTTGCTCTGTGAGAGGGTGCAAAGGggtcagtgcgtgtctaggcaagttctattttggcaggctgtaatggtgaaa Alignment from Spaln_aa2Genome AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG agattgtcacctgcaagtcaatcaagctctcactgtctctttggttgcagAATCTTCAGGGGCCTTGAATTTGAAGATCTCTGAGATGGATAAGGCAGCTGGGTCAGTGCAGGGGGGAGATGAGGTTTATTTGCTCTGTGAGAGGGTGCAAAGGGgtcagtgcgtgtctaggcaagttctattttggcaggctgtaatggtgaaa Alignment from Spaln_nt2Genome AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG agattgtcacctgcaagtcaatcaagctctcactgtctctttggttgcagAATCTTCAGGGGCCTTGAATTTGAAGATCTCTGAGATGGATAAGGCAGCTGGGTCAGTGCAGGGGGGAGATGAGGTTTATTTGCTCTGTGAGAGGGTGCAAAGGGgtcagtgcgtgtctaggcaagttctattttggcaggctgtaatggtgaaa Alignment from Pairagon AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG agattgtcacctgcaagtcaatcaagctctcactgtctctttggttgcagAATCTTCAGGGGCCTTGAATTTGAAGATCTCTGAGATGGATAAGGCAGCTGGGTCAGTGCAGGGGGGAGATGAGGTTTATTTGCTCTGTGAGAGGGTGCAAAGGGgtcagtgcgtgtctaggcaagttctattttggcaggctgtaatggtgaaa Alignment from Exonerate_protein2genome AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG agattgtcacctgcaagtcaatcaagctctcactgtctctttggttgcagAATCTTCAGGGGCCTTGAATTTGAAGATCTCTGAGATGGATAAGGCAGCTGGGTCAGTGCAGGGGGGAGATGAGGTTTATTTGCTCTGTGAGAGGGTGCAAAGGGgtcagtgcgtgtctaggcaagttctattttggcaggctgtaatggtgaaa Alignment from Exonerate_coding2genome AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG agattgtcacctgcaagtcaatcaagctctcactgtctctttggttgcagAATCTTCAGGGGCCTTGAATTTGAAGATCTCTGAGATGGATAAGGCAGCTGGGTCAGTGCAGGGGGGAGATGAGGTTTATTTGCTCTGTGAGAGGGTGCAAAGGGgtcagtgcgtgtctaggcaagttctattttggcaggctgtaatggtgaaa Alignment from GeneWise AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG agattgtcacctgcaagtcaatcaagctctcactgtctctttggttgcagAATCTTCAGGGGCCTTGAATTTGAAGATCTCTGAGATGGATAAGGCAGCTGGGTCAGTGCAGGGGGGAGATGAGGTTTATTTGCTCTGTGAGAGGGTGCAAAGGGgtcagtgcgtgtctaggcaagttctattttggcaggctgtaatggtgaaa #### Nfkb2_ID9837_15 --> 0 - 1 Original Alignment ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGT---GCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGg ttgtaagcaaagagtgcaaggctatccctttttcttcttttcttctacagACCCCGCTGCACCTTGCTTTAATTACTGGGCAGAAAAGAGTGGTGAGCTTTCTGCTGCAGGTGGGTGTGGACCCCACACTACTGGAAAGACACGAA---TCTGCACTCCACCTGGCTCACACCTGTGAAAATTTCTTGCCATCTTGGACCTCTCAGGAGCTCAGGGCAGGAGCAGCAGCTGCCCCTGAGTTGTTGCAGGCTTTGTTACGCAGTGAAGCCCATGCTGTACCACATATA---CATATGCCCGAGTTTGAGggtggctgctaaaagccatggcatgatgaatccagaagcctcagtagtcag Alignment from CESAR ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGTGCTGCA---GCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGg ttgtaagcaaagagtgcaaggctatccctttttcttcttttcttctacagACCCCGCTGCACCTTGCTTTAATTACTGGGCAGAAAAGAGTGGTGAGCTTTCTGCTGCAGGTGGGTGTGGACCCCACACTACTGGAAAGACAC---GAATCTGCACTCCACCTGGCTCACACCTGTGAAAATTTCTTGCCATCTTGGACCTCTCAGGAGCTCAGGGCAGGAGCAGCAGCTGCCCCTGAGTTGTTGCAGGCTTTGTTACGCAGTGAAGCCCATGCTGTACCACATATA---CATATGCCCGAGTTTGAGggtggctgctaaaagccatggcatgatgaatccagaagcctcagtagtcag Alignment from Spaln_aa2Genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTG GCTCTCCGGGCAGGT---GCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG ttgtaagcaaagagtgcaaggctatccctttttcttcttttcttctacagACCCCGCTGCACCTTGCTTTAATTACTGGGCAGAAAAGAGTGGTGAGCTTTCTGCTGCAGGTGGGTGTGGACCCCACACTACTGGAAAGACAC---GAATCTGCACTCCACCTGgctcacacctgtgaaaatttcttgccatcttggacctctcagGAGCTCAGGGCAGGAGCAGCAGCTGCCCCTGAGTTGTTGCAGGCTTTGTTACGCAGTGAAGCCCATGCTGTACCACATATA---CATATGCCCGAGTTTGAGGgtggctgctaaaagccatggcatgatgaatccagaagcctcagtagtcag Alignment from Spaln_nt2Genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTG GCTCTCCGGGCAGGTGCTGCAGC---CCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG ttgtaagcaaagagtgcaaggctatccctttttcttcttttcttctacagACCCCGCTGCACCTTGCTTTAATTACTGGGCAGAAAAGAGTGGTGAGCTTTCTGCTGCAGGTGGGTGTGGACCCCACACTACTGGAAAGACAC---GAATCTGCACTCCACCTGgctcacacctgtgaaaatttcttgccatcttggacctctcagGAGCTCAGGGCAGGAGCAGCAGCTGCCCCTGAGTTGTTGCAGGCTTTGTTACGCAGTGAAGCCCATGCTGTACCACATATA---CATATGCCCGAGTTTGAGGgtggctgctaaaagccatggcatgatgaatccagaagcctcagtagtcag Alignment from Pairagon ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGTGCTGCA---GCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG ttgtaagcaaagagtgcaaggctatccctttttcttcttttcttctacagACCCCGCTGCACCTTGCTTTAATTACTGGGCAGAAAAGAGTGGTGAGCTTTCTGCTGCAGGTGGGTGTGGACCCCACACTACTGGAAAGACACGAA---TCTGCACTCCACCTGGCTCACACCTGTGAAAATTTCTTGCCATCTTGGACCTCTCAGGAGCTCAGGGCAGGAGCAGCAGCTGCCCCTGAGTTGTTGCAGGCTTTGTTACGCAGTGAAGCCCATGCTGTACCACATATA---CATATGCCCGAGTTTGAGGgtggctgctaaaagccatggcatgatgaatccagaagcctcagtagtcag Alignment from Exonerate_protein2genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTG GCTCTCCGGGCAGGT---GCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG ttgtaagcaaagagtgcaaggctatccctttttcttcttttcttctacagACCCCGCTGCACCTTGCTTTAATTACTGGGCAGAAAAGAGTGGTGAGCTTTCTGCTGCAGGTGGGTGTGGACCCCACACTACTGGAAAGACAC---GAATCTGCACTCCACCTGgctcacacctgtgaaaatttcttgccatcttggacctctcagGAGCTCAGGGCAGGAGCAGCAGCTGCCCCTGAGTTGTTGCAGGCTTTGTTACGCAGTGAAGCCCATGCTGTACCACATATA---CATATGCCCGAGTTTGAGGgtggctgctaaaagccatggcatgatgaatccagaagcctcagtagtcag Alignment from Exonerate_coding2genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGA ttgtaagcaaagagtgcaaggctatccctttttcttcttttcttctacagACCCCGCTGCACCTTGCTTTAATTACTGGGCAGAAAAGAGTGGTGAGCTTTCTGCTGCAGGTGGGTGTGGACCCCACACTACTGGAAAGACAC---GAATCTGCACTCCACCTGGCTCACACCTGTGAAAATTTCTTGCCATCTTGGACCTCTCAGGAGCTCAGGGCAGGAGCAGCAGCTGCCCCTGAGTTGTTGCAGGCTTTGTTACGCAGtgaagcccatgctgtaccacatatacatatgcccgagtttgagggtggctgctaaaagccatggcatgatgaatccagaagcctcagtagtcag Alignment from GeneWise ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGT---GCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG ttgtaagcaaagagtgcaaggctatccctttttcttcttttcttctacagACCCCGCTGCACCTTGCTTTAATTACTGGGCAGAAAAGAGTGGTGAGCTTTCTGCTGCAGGTGGGTGTGGACCCCACACTACTGGAAAGACAC---GAATCTGCACTCCACCTGGCTCACACCTGTGAAAATTTCTTGCCATCTTGGACCTCTCAGGAGCTCAGGGCAGGAGCAGCAGCTGCCCCTGAGTTGTTGCAGGCTTTGTTACGCAGTGAAGCCCATGCTGTACCACATATA---CATATGCCCGAGTTTGAGGgtggctgctaaaagccatggcatgatgaatccagaagcctcagtagtcag #### Nhlrc2_ID12142_10 --> 0 - 1 Original Alignment CTCCCAGTCTGCAAGTCTGACAGTGCTGTGGTAGATGGCTCCTTCCCTAGAGAGAAACAGAAGACAGTGCCCAAGGTGCCGAAGTCTGCCGCACACATCGGCCTCCCCCCTGTGACGGTGCATCCGGGCCAGGCTCTGCAGCTTAGGCTCAAGCTCCAGCTCCCGCCAGGAGCAAAGCTGACCGAAGGCGCGCCCAGCTGCTGGTTCCTGGAAGCTGAAg ccaccaagttataccatggtcctaggccagtgtctttcctgtccctaaagCTTCCAGTCTGCAAGTCTGACAGTTCTGTGGTGGATGGATCATTTCCTAGGGCAAAACTAAAGACAGTGCCCAAAGTCCCAAAATTTGCCACACATGTTGGCCTTCCCCCAGTGACAGTTCATCCTGGTCAGGCTCTGCAGCTTAGACTTGAGCTCCAGCTACTACCAGGGGCAAAGCTTACTGAGGGGGCACCCAGCTGCTGGTTCTTAGATGCTGATggtaaggcatgttatgggtgagggcctgtgatggctgtataggaacagctc Alignment from CESAR CTCCCAGTCTGCAAGTCTGACAGTGCTGTGGTAGATGGCTCCTTCCCTAGAGAGAAACAGAAGACAGTGCCCAAGGTGCCGAAGTCTGCCGCACACATCGGCCTCCCCCCTGTGACGGTGCATCCGGGCCAGGCTCTGCAGCTTAGGCTCAAGCTCCAGCTCCCGCCAGGAGCAAAGCTGACCGAAGGCGCGCCCAGCTGCTGGTTCCTGGAAGCTGAAg ccaccaagttataccatggtcctaggccagtgtctttcctgtccctaaagCTTCCAGTCTGCAAGTCTGACAGTTCTGTGGTGGATGGATCATTTCCTAGGGCAAAACTAAAGACAGTGCCCAAAGTCCCAAAATTTGCCACACATGTTGGCCTTCCCCCAGTGACAGTTCATCCTGGTCAGGCTCTGCAGCTTAGACTTGAGCTCCAGCTACTACCAGGGGCAAAGCTTACTGAGGGGGCACCCAGCTGCTGGTTCTTAGATGCTGATggtaaggcatgttatgggtgagggcctgtgatggctgtataggaacagctc Alignment from Spaln_aa2Genome CTCCCAGTCTGCAAGTCTGACAGTGCTGTGGTAGATGGCTCCTTCCCTAGAGAGAAACAGAAGACAGTGCCCAAGGTGCCGAAGTCTGCCGCACACATCGGCCTCCCCCCTGTGACGGTGCATCCGGGCCAGGCTCTGCAGCTTAGGCTCAAGCTCCAGCTCCCGCCAGGAGCAAAGCTGACCGAAGGCGCGCCCAGCTGCTGGTTCCTGGAAGCTGAAG ccaccaagttataccatggtcctaggccagtgtctttcctgtccctaaagCTTCCAGTCTGCAAGTCTGACAGTTCTGTGGTGGATGGATCATTTCCTAGGGCAAAACTAAAGACAGTGCCCAAAGTCCCAAAATTTGCCACACATGTTGGCCTTCCCCCAGTGACAGTTCATCCTGGTCAGGCTCTGCAGCTTAGACTTGAGCTCCAGCTACTACCAGGGGCAAAGCTTACTGAGGGGGCACCCAGCTGCTGGTTCTTAGATGCTGATGgtaaggcatgttatgggtgagggcctgtgatggctgtataggaacagctc Alignment from Spaln_nt2Genome CTCCCAGTCTGCAAGTCTGACAGTGCTGTGGTAGATGGCTCCTTCCCTAGAGAGAAACAGAAGACAGTGCCCAAGGTGCCGAAGTCTGCCGCACACATCGGCCTCCCCCCTGTGACGGTGCATCCGGGCCAGGCTCTGCAGCTTAGGCTCAAGCTCCAGCTCCCGCCAGGAGCAAAGCTGACCGAAGGCGCGCCCAGCTGCTGGTTCCTGGAAGCTGAAG ccaccaagttataccatggtcctaggccagtgtctttcctgtccctaaagCTTCCAGTCTGCAAGTCTGACAGTTCTGTGGTGGATGGATCATTTCCTAGGGCAAAACTAAAGACAGTGCCCAAAGTCCCAAAATTTGCCACACATGTTGGCCTTCCCCCAGTGACAGTTCATCCTGGTCAGGCTCTGCAGCTTAGACTTGAGCTCCAGCTACTACCAGGGGCAAAGCTTACTGAGGGGGCACCCAGCTGCTGGTTCTTAGATGCTGATGgtaaggcatgttatgggtgagggcctgtgatggctgtataggaacagctc Alignment from Pairagon CTCCCAGTCTGCAAGTCTGACAGTGCTGTGGTAGATGGCTCCTTCCCTAGAGAGAAACAGAAGACAGTGCCCAAGGTGCCGAAGTCTGCCGCACACATCGGCCTCCCCCCTGTGACGGTGCATCCGGGCCAGGCTCTGCAGCTTAGGCTCAAGCTCCAGCTCCCGCCAGGAGCAAAGCTGACCGAAGGCGCGCCCAGCTGCTGGTTCCTGGAAGCTGAAG ccaccaagttataccatggtcctaggccagtgtctttcctgtccctaaagCTTCCAGTCTGCAAGTCTGACAGTTCTGTGGTGGATGGATCATTTCCTAGGGCAAAACTAAAGACAGTGCCCAAAGTCCCAAAATTTGCCACACATGTTGGCCTTCCCCCAGTGACAGTTCATCCTGGTCAGGCTCTGCAGCTTAGACTTGAGCTCCAGCTACTACCAGGGGCAAAGCTTACTGAGGGGGCACCCAGCTGCTGGTTCTTAGATGCTGATGgtaaggcatgttatgggtgagggcctgtgatggctgtataggaacagctc Alignment from Exonerate_protein2genome CTCCCAGTCTGCAAGTCTGACAGTGCTGTGGTAGATGGCTCCTTCCCTAGAGAGAAACAGAAGACAGTGCCCAAGGTGCCGAAGTCTGCCGCACACATCGGCCTCCCCCCTGTGACGGTGCATCCGGGCCAGGCTCTGCAGCTTAGGCTCAAGCTCCAGCTCCCGCCAGGAGCAAAGCTGACCGAAGGCGCGCCCAGCTGCTGGTTCCTGGAAGCTGAAG ccaccaagttataccatggtcctaggccagtgtctttcctgtccctaaagCTTCCAGTCTGCAAGTCTGACAGTTCTGTGGTGGATGGATCATTTCCTAGGGCAAAACTAAAGACAGTGCCCAAAGTCCCAAAATTTGCCACACATGTTGGCCTTCCCCCAGTGACAGTTCATCCTGGTCAGGCTCTGCAGCTTAGACTTGAGCTCCAGCTACTACCAGGGGCAAAGCTTACTGAGGGGGCACCCAGCTGCTGGTTCTTAGATGCTGATGgtaaggcatgttatgggtgagggcctgtgatggctgtataggaacagctc Alignment from Exonerate_coding2genome CTCCCAGTCTGCAAGTCTGACAGTGCTGTGGTAGATGGCTCCTTCCCTAGAGAGAAACAGAAGACAGTGCCCAAGGTGCCGAAGTCTGCCGCACACATCGGCCTCCCCCCTGTGACGGTGCATCCGGGCCAGGCTCTGCAGCTTAGGCTCAAGCTCCAGCTCCCGCCAGGAGCAAAGCTGACCGAAGGCGCGCCCAGCTGCTGGTTCCTGGAAGCTGAAG ccaccaagttataccatggtcctaggccagtgtctttcctgtccctaaagCTTCCAGTCTGCAAGTCTGACAGTTCTGTGGTGGATGGATCATTTCCTAGGGCAAAACTAAAGACAGTGCCCAAAGTCCCAAAATTTGCCACACATGTTGGCCTTCCCCCAGTGACAGTTCATCCTGGTCAGGCTCTGCAGCTTAGACTTGAGCTCCAGCTACTACCAGGGGCAAAGCTTACTGAGGGGGCACCCAGCTGCTGGTTCTTAGATGCTGATGgtaaggcatgttatgggtgagggcctgtgatggctgtataggaacagctc Alignment from GeneWise CTCCCAGTCTGCAAGTCTGACAGTGCTGTGGTAGATGGCTCCTTCCCTAGAGAGAAACAGAAGACAGTGCCCAAGGTGCCGAAGTCTGCCGCACACATCGGCCTCCCCCCTGTGACGGTGCATCCGGGCCAGGCTCTGCAGCTTAGGCTCAAGCTCCAGCTCCCGCCAGGAGCAAAGCTGACCGAAGGCGCGCCCAGCTGCTGGTTCCTGGAAGCTGAAG ccaccaagttataccatggtcctaggccagtgtctttcctgtccctaaagCTTCCAGTCTGCAAGTCTGACAGTTCTGTGGTGGATGGATCATTTCCTAGGGCAAAACTAAAGACAGTGCCCAAAGTCCCAAAATTTGCCACACATGTTGGCCTTCCCCCAGTGACAGTTCATCCTGGTCAGGCTCTGCAGCTTAGACTTGAGCTCCAGCTACTACCAGGGGCAAAGCTTACTGAGGGGGCACCCAGCTGCTGGTTCTTAGATGCTGATGgtaaggcatgttatgggtgagggcctgtgatggctgtataggaacagctc #### Nmrk1_ID4440_6 --> 1 - 1 Original Alignment tACCAGAGTATATGAGCCTCCAGACCCTCCAGGGTACTTCGATGGCCACGTGTGGCCCATGTACCTAAAGCACAGACAGGAAATGAGCTCCATCACCTGGGACATTg tttcatcgcttatacattcaagtgtaacattcttctccttttccccttagtACAAGGGTATATGATCCCCCAGAGCCTCCAGGGTACTTTGAGGGCCAACCTGGGCCTATGTACTTAAAGCACAGACAAGAAATGAGTTCCATCACCTGGGATCTTggtaaagtcctattgcccctcctaccacttcaaggactctgttgcccatgt Alignment from CESAR tACCAGAGTATATGAGCCTCCAGACCCTCCAGGGTACTTCGATGGCCACGTGTGGCCCATGTACCTAAAGCACAGACAGGAAATGAGCTCCATCACCTGGGACATTg tttcatcgcttatacattcaagtgtaacattcttctccttttccccttagtACAAGGGTATATGATCCCCCAGAGCCTCCAGGGTACTTTGAGGGCCAACCTGGGCCTATGTACTTAAAGCACAGACAAGAAATGAGTTCCATCACCTGGGATCTTggtaaagtcctattgcccctcctaccacttcaaggactctgttgcccatgt Alignment from Spaln_aa2Genome TACCAGAGTATATGAGCCTCCAGACCCTCCAGGGTACTTCGATGGCCACGTGTGGCCCATGTACCTAAAGCACAGACAGGAAATGAGCTCCATCACCTGGGACATTG tttcatcgcttatacattcaagtgtaacattcttctccttttccccttagTACAAGGGTATATGATCCCCCAGAGCCTCCAGGGTACTTTGAGGGCCAACCTGGGCCTATGTACTTAAAGCACAGACAAGAAATGAGTTCCATCACCTGGGATCTTGgtaaagtcctattgcccctcctaccacttcaaggactctgttgcccatgt Alignment from Spaln_nt2Genome TACCAGAGTATATGAGCCTCCAGACCCTCCAGGGTACTTCGATGGCCACGTGTGGCCCATGTACCTAAAGCACAGACAGGAAATGAGCTCCATCACCTGGGACATTG tttcatcgcttatacattcaagtgtaacattcttctccttttccccttagTACAAGGGTATATGATCCCCCAGAGCCTCCAGGGTACTTTGAGGGCCAACCTGGGCCTATGTACTTAAAGCACAGACAAGAAATGAGTTCCATCACCTGGGATCTTGgtaaagtcctattgcccctcctaccacttcaaggactctgttgcccatgt Alignment from Pairagon TACCAGAGTATATGAGCCTCCAGACCCTCCAGGGTACTTCGATGGCCACGTGTGGCCCATGTACCTAAAGCACAGACAGGAAATGAGCTCCATCACCTGGGACATTG tttcatcgcttatacattcaagtgtaacattcttctccttttccccttagTACAAGGGTATATGATCCCCCAGAGCCTCCAGGGTACTTTGAGGGCCAACCTGGGCCTATGTACTTAAAGCACAGACAAGAAATGAGTTCCATCACCTGGGATCTTGgtaaagtcctattgcccctcctaccacttcaaggactctgttgcccatgt Alignment from Exonerate_protein2genome TACCAGAGTATATGAGCCTCCAGACCCTCCAGGGTACTTCGATGGCCACGTGTGGCCCATGTACCTAAAGCACAGACAGGAAATGAGCTCCATCACCTGGGACATTG tttcatcgcttatacattcaagtgtaacattcttctccttttccccttagTACAAGGGTATATGATCCCCCAGAGCCTCCAGGGTACTTTGAGGGCCAACCTGGGCCTATGTACTTAAAGCACAGACAAGAAATGAGTTCCATCACCTGGGATCTTGgtaaagtcctattgcccctcctaccacttcaaggactctgttgcccatgt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TACCAGAGTATATGAGCCTCCAGACCCTCCAGGGTACTTCGATGGCCACGTGTGGCCCATGTACCTAAAGCACAGACAGGAAATGAGCTCCATCACCTGGGACATTG tttcatcgcttatacattcaagtgtaacattcttctccttttccccttagTACAAGGGTATATGATCCCCCAGAGCCTCCAGGGTACTTTGAGGGCCAACCTGGGCCTATGTACTTAAAGCACAGACAAGAAATGAGTTCCATCACCTGGGATCTTGgtaaagtcctattgcccctcctaccacttcaaggactctgttgcccatgt #### Noc3l_ID7656_19 --> 0 - 2 Original Alignment AGACATTACCATCCCATTGTGCGAAGGTTTGCAGCACATCTGCTTGCTGGGGCACCATCCGAAGGCTCTGAGGCCCTCAAGCCCGAGCTGAGCCGAag tgaatatgtcccatactgagagagagttagcttccttttctacacaccagAGACATCACCAACTTATTGTACAAAAGTTTGCAGCACATTTACTTACTGGTGCACCTTCCGAGGGCTCTGAGGCCCTCAAGCCTGAGCTGAGCCAGaggtctgaatagggcaattgcaaggtatatgagtcaagtatgacaacctcct Alignment from CESAR AGACATTACCATCCCATTGTGCGAAGGTTTGCAGCACATCTGCTTGCTGGGGCACCATCCGAAGGCTCTGAGGCCCTCAAGCCCGAGCTGAGCCGAag tgaatatgtcccatactgagagagagttagcttccttttctacacaccagAGACATCACCAACTTATTGTACAAAAGTTTGCAGCACATTTACTTACTGGTGCACCTTCCGAGGGCTCTGAGGCCCTCAAGCCTGAGCTGAGCCAGaggtctgaatagggcaattgcaaggtatatgagtcaagtatgacaacctcct Alignment from Spaln_aa2Genome AGACATTACCATCCCATTGTGCGAAGGTTTGCAGCACATCTGCTTGCTGGGGCACCATCCGAAGGCTCTGAGGCCCTCAAGCCCGAGCTGAGCCGAAG tgaatatgtcccatactgagagagagttagcttccttttctacacaccagAGACATCACCAACTTATTGTACAAAAGTTTGCAGCACATTTACTTACTGGTGCACCTTCCGAGGGCTCTGAGGCCCTCAAGCCTGAGCTGAGCCAGAGgtctgaatagggcaattgcaaggtatatgagtcaagtatgacaacctcct Alignment from Spaln_nt2Genome AGACATTACCATCCCATTGTGCGAAGGTTTGCAGCACATCTGCTTGCTGGGGCACCATCCGAAGGCTCTGAGGCCCTCAAGCCCGAGCTGAGCCGAAG tgaatatgtcccatactgagagagagttagcttccttttctacacaccagAGACATCACCAACTTATTGTACAAAAGTTTGCAGCACATTTACTTACTGGTGCACCTTCCGAGGGCTCTGAGGCCCTCAAGCCTGAGCTGAGCCAGAGgtctgaatagggcaattgcaaggtatatgagtcaagtatgacaacctcct Alignment from Pairagon AGACATTACCATCCCATTGTGCGAAGGTTTGCAGCACATCTGCTTGCTGGGGCACCATCCGAAGGCTCTGAGGCCCTCAAGCCCGAGCTGAGCCGAAG tgaatatgtcccatactgagagagagttagcttccttttctacacaccagAGACATCACCAACTTATTGTACAAAAGTTTGCAGCACATTTACTTACTGGTGCACCTTCCGAGGGCTCTGAGGCCCTCAAGCCTGAGCTGAGCCAGAGgtctgaatagggcaattgcaaggtatatgagtcaagtatgacaacctcct Alignment from Exonerate_protein2genome AGACATTACCATCCCATTGTGCGAAGGTTTGCAGCACATCTGCTTGCTGGGGCACCATCCGAAGGCTCTGAGGCCCTCAAGCCCGAGCTGAGCCGAAG tgaatatgtcccatactgagagagagttagcttccttttctacacaccagAGACATCACCAACTTATTGTACAAAAGTTTGCAGCACATTTACTTACTGGTGCACCTTCCGAGGGCTCTGAGGCCCTCAAGCCTGAGCTGAGCCAGAGgtctgaatagggcaattgcaaggtatatgagtcaagtatgacaacctcct Alignment from Exonerate_coding2genome AGACATTACCATCCCATTGTGCGAAGGTTTGCAGCACATCTGCTTGCTGGGGCACCATCCGAAGGCTCTGAGGCCCTCAAGCCCGAGCTGAGCCGAAGATCTGCAGTTGAACTTTTTGAGACTTACAGCATGGCAGCAATGACA---T tgaatatgtcccatactgagagagagttagcttccttttctacacaccagAGACATCACCAACTTATTGTACAAAAGTTTGCAGCACATTTACTTACTGGTGCACCTTCCGAGGGCTCTGAGGCCCTCAAGCCTGAGCTGAGCCAGAGGTCTGAATAGGGCAATTGCAAGGTATATGAGTCAAGTATGACAACCTCCT Alignment from GeneWise AGACATTACCATCCCATTGTGCGAAGGTTTGCAGCACATCTGCTTGCTGGGGCACCATCCGAAGGCTCTGAGGCCCTCAAGCCCGAGCTGAGCCGAAG tgaatatgtcccatactgagagagagttagcttccttttctacacaccagAGACATCACCAACTTATTGTACAAAAGTTTGCAGCACATTTACTTACTGGTGCACCTTCCGAGGGCTCTGAGGCCCTCAAGCCTGAGCTGAGCCAGAGgtctgaatagggcaattgcaaggtatatgagtcaagtatgacaacctcct #### Noc3l_ID7657_18 --> 0 - 0 Original Alignment ACTTTTCCCAGAACAGATCTCTTGCTTGATAACGAGTCTCAGGGCAGCGGGGTGTTTCTACCTGAGCTGGAGGAGCCAGAGTACTGTAATGCACAGAACACCGCACTGTGGGAGCTGCACACGCTTCGG acttttgccagatacaaccctgtgaccttaaacactgtactcttttacagACTTTCCCTGTAACAGATCTTCTACTTGATAATGAATCTCAGGGCAGTGGGGTATTTCTTCCAGAGCTAGAGGAGCCAGAGTATTGCAACGCACAGAACACTGCCTTGTGGGAACTTCACACACTTTGTgtaagtactgctcttttcaattgttgacttaatcctgccctgtctcaaaa Alignment from CESAR ACTTTTCCCAGAACAGATCTCTTGCTTGATAACGAGTCTCAGGGCAGCGGGGTGTTTCTACCTGAGCTGGAGGAGCCAGAGTACTGTAATGCACAGAACACCGCACTGTGGGAGCTGCACACGCTTCGG acttttgccagatacaaccctgtgaccttaaacactgtactcttttacagACTTTCCCTGTAACAGATCTTCTACTTGATAATGAATCTCAGGGCAGTGGGGTATTTCTTCCAGAGCTAGAGGAGCCAGAGTATTGCAACGCACAGAACACTGCCTTGTGGGAACTTCACACACTTTGTgtaagtactgctcttttcaattgttgacttaatcctgccctgtctcaaaa Alignment from Spaln_aa2Genome ACTTTTCCCAGAACAGATCTCTTGCTTGATAACGAGTCTCAGGGCAGCGGGGTGTTTCTACCTGAGCTGGAGGAGCCAGAGTACTGTAATGCACAGAACACCGCACTGTGGGAGCTGCACACGCTTCGG acttttgccagatacaaccctgtgaccttaaacactgtactcttttacagACTTTCCCTGTAACAGATCTTCTACTTGATAATGAATCTCAGGGCAGTGGGGTATTTCTTCCAGAGCTAGAGGAGCCAGAGTATTGCAACGCACAGAACACTGCCTTGTGGGAACTTCACACACTTTGTgtaagtactgctcttttcaattgttgacttaatcctgccctgtctcaaaa Alignment from Spaln_nt2Genome ACTTTTCCCAGAACAGATCTCTTGCTTGATAACGAGTCTCAGGGCAGCGGGGTGTTTCTACCTGAGCTGGAGGAGCCAGAGTACTGTAATGCACAGAACACCGCACTGTGGGAGCTGCACACGCTTCGG acttttgccagatacaaccctgtgaccttaaacactgtactcttttacagACTTTCCCTGTAACAGATCTTCTACTTGATAATGAATCTCAGGGCAGTGGGGTATTTCTTCCAGAGCTAGAGGAGCCAGAGTATTGCAACGCACAGAACACTGCCTTGTGGGAACTTCACACACTTTGTgtaagtactgctcttttcaattgttgacttaatcctgccctgtctcaaaa Alignment from Pairagon ACTTTTCCCAGAACAGATCTCTTGCTTGATAACGAGTCTCAGGGCAGCGGGGTGTTTCTACCTGAGCTGGAGGAGCCAGAGTACTGTAATGCACAGAACACCGCACTGTGGGAGCTGCACACGCTTCGG acttttgccagatacaaccctgtgaccttaaacactgtactcttttacagACTTTCCCTGTAACAGATCTTCTACTTGATAATGAATCTCAGGGCAGTGGGGTATTTCTTCCAGAGCTAGAGGAGCCAGAGTATTGCAACGCACAGAACACTGCCTTGTGGGAACTTCACACACTTTGTgtaagtactgctcttttcaattgttgacttaatcctgccctgtctcaaaa Alignment from Exonerate_protein2genome ACTTTTCCCAGAACAGATCTCTTGCTTGATAACGAGTCTCAGGGCAGCGGGGTGTTTCTACCTGAGCTGGAGGAGCCAGAGTACTGTAATGCACAGAACACCGCACTGTGGGAGCTGCACACGCTTCGG acttttgccagatacaaccctgtgaccttaaacactgtactcttttacagACTTTCCCTGTAACAGATCTTCTACTTGATAATGAATCTCAGGGCAGTGGGGTATTTCTTCCAGAGCTAGAGGAGCCAGAGTATTGCAACGCACAGAACACTGCCTTGTGGGAACTTCACACACTTTGTgtaagtactgctcttttcaattgttgacttaatcctgccctgtctcaaaa Alignment from Exonerate_coding2genome ACTTTTCCCAGAACAGATCTCTTGCTTGATAACGAGTCTCAGGGCAGCGGGGTGTTTCTACCTGAGCTGGAGGAGCCAGAGTACTGTAATGCACAGAACACCGCACTGTGGGAGCTGCACACGCTTCGG acttttgccagatacaaccctgtgaccttaaacactgtactcttttacagACTTTCCCTGTAACAGATCTTCTACTTGATAATGAATCTCAGGGCAGTGGGGTATTTCTTCCAGAGCTAGAGGAGCCAGAGTATTGCAACGCACAGAACACTGCCTTGTGGGAACTTCACACACTTTGTgtaagtactgctcttttcaattgttgacttaatcctgccctgtctcaaaa Alignment from GeneWise ACTTTTCCCAGAACAGATCTCTTGCTTGATAACGAGTCTCAGGGCAGCGGGGTGTTTCTACCTGAGCTGGAGGAGCCAGAGTACTGTAATGCACAGAACACCGCACTGTGGGAGCTGCACACGCTTCGG acttttgccagatacaaccctgtgaccttaaacactgtactcttttacagACTTTCCCTGTAACAGATCTTCTACTTGATAATGAATCTCAGGGCAGTGGGGTATTTCTTCCAGAGCTAGAGGAGCCAGAGTATTGCAACGCACAGAACACTGCCTTGTGGGAACTTCACACACTTTGTgtaagtactgctcttttcaattgttgacttaatcctgccctgtctcaaaa #### Noc3l_ID7658_17 --> 2 - 0 Original Alignment gtGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT attttaccaatgaacaccttagatgaatacattcttaacactgatgttaggcACCACTAATGATGGCATAGAGATCGTACTCCACTGCTTGGATGTCATGGTTAGCAAATGCAGAAAGCATGTCTCT---CAGAGGGCTATTGCCTTCATCAAGCATCTTTGTACCCTAGCGTTGCAAGTTCTCCCAAATTCAAGCATTGGGCTTCTACCAACCACAAGGGTACTGATGCATgtaaactcaagggacttgaggtggtgcaggtcaatcaggctacagtctag Alignment from CESAR gtGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT attttaccaatgaacaccttagatgaatacattcttaacactgatgttaggcACCACTAATGATGGCATAGAGATCGTACTCCACTGCTTGGATGTCATGGTTAGCAAATGCAGAAAGCATGTCTCT---CAGAGGGCTATTGCCTTCATCAAGCATCTTTGTACCCTAGCGTTGCAAGTTCTCCCAAATTCAAGCATTGGGCTTCTACCAACCACAAGGGTACTGATGCATgtaaactcaagggacttgaggtggtgcaggtcaatcaggctacagtctag Alignment from Spaln_aa2Genome GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT attttaccaatgaacaccttagatgaatacattcttaacactgatgttagGCACCACTAATGATGGCATAGAGATCGTACTCCACTGCTTGGATGTCATGGTTAGCAAATGCAGAAAGCATGTCTCT---CAGAGGGCTATTGCCTTCATCAAGCATCTTTGTACCCTAGCGTTGCAAGTTCTCCCAAATTCAAGCATTGGGCTTCTACCAACCACAAGGGTACTGATGCATgtaaactcaagggacttgaggtggtgcaggtcaatcaggctacagtctag Alignment from Spaln_nt2Genome GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT attttaccaatgaacaccttagatgaatacattcttaacactgatgttagGCACCACTAATGATGGCATAGAGATCGTACTCCACTGCTTGGATGTCATGGTTAGCAAATGCAGAAAGCATGTCTC---TCAGAGGGCTATTGCCTTCATCAAGCATCTTTGTACCCTAGCGTTGCAAGTTCTCCCAAATTCAAGCATTGGGCTTCTACCAACCACAAGGGTACTGATGCATgtaaactcaagggacttgaggtggtgcaggtcaatcaggctacagtctag Alignment from Pairagon GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT attttaccaatgaacaccttagatgaatacattcttaacactgatgttagGCACCACTAATGATGGCATAGAGATCGTACTCCACTGCTTGGATGTCATGGTTAGCAAATGCAGAAAGCATGTCTC---TCAGAGGGCTATTGCCTTCATCAAGCATCTTTGTACCCTAGCGTTGCAAGTTCTCCCAAATTCAAGCATTGGGCTTCTACCAACCACAAGGGTACTGATGCATgtaaactcaagggacttgaggtggtgcaggtcaatcaggctacagtctag Alignment from Exonerate_protein2genome GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT attttaccaatgaacaccttagatgaatacattcttaacactgatgttagGCACCACTAATGATGGCATAGAGATCGTACTCCACTGCTTGGATGTCATGGTTAGCAAATGCAGAAAGCATGTCTCT---CAGAGGGCTATTGCCTTCATCAAGCATCTTTGTACCCTAGCGTTGCAAGTTCTCCCAAATTCAAGCATTGGGCTTCTACCAACCACAAGGGTACTGATGCATgtaaactcaagggacttgaggtggtgcaggtcaatcaggctacagtctag Alignment from Exonerate_coding2genome GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT attttaccaatgaacaccttagatgaatacattcttaacactgatgttagGCACCACTAATGATGGCATAGAGATCGTACTCCACTGCTTGGATGTCATGGTTAGCAAATGCAGAAAGCATGTCTCT---CAGAGGGCTATTGCCTTCATCAAGCATCTTTGTACCCTAGCGTTGCAAGTTCTCCCAAATTCAAGCATTGGGCTTCTACCAACCACAAGGGTACTGATGCATgtaaactcaagggacttgaggtggtgcaggtcaatcaggctacagtctag Alignment from GeneWise GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT attttaccaatgaacaccttagatgaatacattcttaacactgatgttagGCACCACTAATGATGGCATAGAGATCGTACTCCACTGCTTGGATGTCATGGTTAGCAAATGCAGAAAGCATGTCTCT---CAGAGGGCTATTGCCTTCATCAAGCATCTTTGTACCCTAGCGTTGCAAGTTCTCCCAAATTCAAGCATTGGGCTTCTACCAACCACAAGGGTACTGATGCATgtaaactcaagggacttgaggtggtgcaggtcaatcaggctacagtctag #### Noc3l_ID7659_16 --> 2 - 1 Original Alignment gtGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAg cattctgcctccctttcatttcactaaactgattctttttgtgtctccaggaGATGATTTGAATATTGACCCAATGAAATTTTATACCCCACTATTTCAGACACTATTTACATTGCATGCAggtatgtcattgtagcttagagcctttatattcagtggtgctagtattaaa Alignment from CESAR gtGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAg cattctgcctccctttcatttcactaaactgattctttttgtgtctccaggaGATGATTTGAATATTGACCCAATGAAATTTTATACCCCACTATTTCAGACACTATTTACATTGCATGCAggtatgtcattgtagcttagagcctttatattcagtggtgctagtattaaa Alignment from Spaln_aa2Genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG cattctgcctccctttcatttcactaaactgattctttttgtgtctccagGAGATGATTTGAATATTGACCCAATGAAATTTTATACCCCACTATTTCAGACACTATTTACATTGCATGCAGgtatgtcattgtagcttagagcctttatattcagtggtgctagtattaaa Alignment from Spaln_nt2Genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG cattctgcctccctttcatttcactaaactgattctttttgtgtctccagGAGATGATTTGAATATTGACCCAATGAAATTTTATACCCCACTATTTCAGACACTATTTACATTGCATGCAGgtatgtcattgtagcttagagcctttatattcagtggtgctagtattaaa Alignment from Pairagon GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG cattctgcctccctttcatttcactaaactgattctttttgtgtctccagGAGATGATTTGAATATTGACCCAATGAAATTTTATACCCCACTATTTCAGACACTATTTACATTGCATGCAGgtatgtcattgtagcttagagcctttatattcagtggtgctagtattaaa Alignment from Exonerate_protein2genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG cattctgcctccctttcatttcactaaactgattctttttgtgtctccagGAGATGATTTGAATATTGACCCAATGAAATTTTATACCCCACTATTTCAGACACTATTTACATTGCATGCAGgtatgtcattgtagcttagagcctttatattcagtggtgctagtattaaa Alignment from Exonerate_coding2genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG cattctgcctccctttcatttcactaaactgattctttttgtgtctccagGAGATGATTTGAATATTGACCCAATGAAATTTTATACCCCACTATTTCAGACACTATTTACATTGCATGCAGgtatgtcattgtagcttagagcctttatattcagtggtgctagtattaaa Alignment from GeneWise GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG cattctgcctccctttcatttcactaaactgattctttttgtgtctccagGAGATGATTTGAATATTGACCCAATGAAATTTTATACCCCACTATTTCAGACACTATTTACATTGCATGCAGgtatgtcattgtagcttagagcctttatattcagtggtgctagtattaaa #### Noc3l_ID7662_13 --> 0 - 2 Original Alignment CACACCGAGACTCTGAATATTGTGTTTGTGACCTACTTCAGAATACTGAAGAAGGCCCAGAAGTCACCTCTTCTGCCAGCGGTTCTAGAAGGCCTTGCCaa agtgcttggtgcaggctttatatcactgtcttaaactttaaaatccctagCACACTGAGACTCTTAATATTGTGTTTGTGACCTATTTCAGAATACTGAAGAAGGCCCAGGAGGCACCTCTTCTGCCAGCAGTTCTAGAAGGCCTTGCCaagtaaggactgtattaggtgtcaatagcaggaatcttaacatgtccttgtc Alignment from CESAR CACACCGAGACTCTGAATATTGTGTTTGTGACCTACTTCAGAATACTGAAGAAGGCCCAGAAGTCACCTCTTCTGCCAGCGGTTCTAGAAGGCCTTGCCaa agtgcttggtgcaggctttatatcactgtcttaaactttaaaatccctagCACACTGAGACTCTTAATATTGTGTTTGTGACCTATTTCAGAATACTGAAGAAGGCCCAGGAGGCACCTCTTCTGCCAGCAGTTCTAGAAGGCCTTGCCaagtaaggactgtattaggtgtcaatagcaggaatcttaacatgtccttgtc Alignment from Spaln_aa2Genome CACACCGAGACTCTGAATATTGTGTTTGTGACCTACTTCAGAATACTGAAGAAGGCCCAGAAGTCACCTCTTCTGCCAGCGGTTCTAGAAGGCCTTGCCAA agtgcttggtgcaggctttatatcactgtcttaaactttaaaatccctagCACACTGAGACTCTTAATATTGTGTTTGTGACCTATTTCAGAATACTGAAGAAGGCCCAGGAGGCACCTCTTCTGCCAGCAGTTCTAGAAGGCCTTGCCAAgtaaggactgtattaggtgtcaatagcaggaatcttaacatgtccttgtc Alignment from Spaln_nt2Genome CACACCGAGACTCTGAATATTGTGTTTGTGACCTACTTCAGAATACTGAAGAAGGCCCAGAAGTCACCTCTTCTGCCAGCGGTTCTAGAAGGCCTTGCCAA agtgcttggtgcaggctttatatcactgtcttaaactttaaaatccctagCACACTGAGACTCTTAATATTGTGTTTGTGACCTATTTCAGAATACTGAAGAAGGCCCAGGAGGCACCTCTTCTGCCAGCAGTTCTAGAAGGCCTTGCCAAgtaaggactgtattaggtgtcaatagcaggaatcttaacatgtccttgtc Alignment from Pairagon CACACCGAGACTCTGAATATTGTGTTTGTGACCTACTTCAGAATACTGAAGAAGGCCCAGAAGTCACCTCTTCTGCCAGCGGTTCTAGAAGGCCTTGCCAA agtgcttggtgcaggctttatatcactgtcttaaactttaaaatccctagCACACTGAGACTCTTAATATTGTGTTTGTGACCTATTTCAGAATACTGAAGAAGGCCCAGGAGGCACCTCTTCTGCCAGCAGTTCTAGAAGGCCTTGCCAAgtaaggactgtattaggtgtcaatagcaggaatcttaacatgtccttgtc Alignment from Exonerate_protein2genome CACACCGAGACTCTGAATATTGTGTTTGTGACCTACTTCAGAATACTGAAGAAGGCCCAGAAGTCACCTCTTCTGCCAGCGGTTCTAGAAGGCCTTGCCAA agtgcttggtgcaggctttatatcactgtcttaaactttaaaatccctagCACACTGAGACTCTTAATATTGTGTTTGTGACCTATTTCAGAATACTGAAGAAGGCCCAGGAGGCACCTCTTCTGCCAGCAGTTCTAGAAGGCCTTGCCAAgtaaggactgtattaggtgtcaatagcaggaatcttaacatgtccttgtc Alignment from Exonerate_coding2genome CACACCGAGACTCTGAATATTGTGTTTGTGACCTACTTCAGAATACTGAAGAAGGCCCAGAAGTCACCTCTTCTGCCAGCGGTTCTAGAAGGCCTTGCCAA agtgcttggtgcaggctttatatcactgtcttaaactttaaaatccctagCACACTGAGACTCTTAATATTGTGTTTGTGACCTATTTCAGAATACTGAAGAAGGCCCAGGAGGCACCTCTTCTGCCAGCAGTTCTAGAAGGCCTTGCCAAgtaaggactgtattaggtgtcaatagcaggaatcttaacatgtccttgtc Alignment from GeneWise CACACCGAGACTCTGAATATTGTGTTTGTGACCTACTTCAGAATACTGAAGAAGGCCCAGAAGTCACCTCTTCTGCCAGCGGTTCTAGAAGGCCTTGCCAA agtgcttggtgcaggctttatatcactgtcttaaactttaaaatccctagCACACTGAGACTCTTAATATTGTGTTTGTGACCTATTTCAGAATACTGAAGAAGGCCCAGGAGGCACCTCTTCTGCCAGCAGTTCTAGAAGGCCTTGCCAAgtaaggactgtattaggtgtcaatagcaggaatcttaacatgtccttgtc #### Noc3l_ID7663_12 --> 0 - 0 Original Alignment TGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTG tagataggcttttttttcacatctattacagcacgtgtctctcctttcagTGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTGgtgggtagctcaatgacactgttttaattccaaggcaatctaattttctc Alignment from CESAR TGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTG tagataggcttttttttcacatctattacagcacgtgtctctcctttcagTGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTGgtgggtagctcaatgacactgttttaattccaaggcaatctaattttctc Alignment from Spaln_aa2Genome TGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTG tagataggcttttttttcacatctattacagcacgtgtctctcctttcagTGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTGgtgggtagctcaatgacactgttttaattccaaggcaatctaattttctc Alignment from Spaln_nt2Genome TGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTG tagataggcttttttttcacatctattacagcacgtgtctctcctttcagTGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTGgtgggtagctcaatgacactgttttaattccaaggcaatctaattttctc Alignment from Pairagon TGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTG tagataggcttttttttcacatctattacagcacgtgtctctcctttcagTGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTGgtgggtagctcaatgacactgttttaattccaaggcaatctaattttctc Alignment from Exonerate_protein2genome TGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTG tagataggcttttttttcacatctattacagcacgtgtctctcctttcagTGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTGgtgggtagctcaatgacactgttttaattccaaggcaatctaattttctc Alignment from Exonerate_coding2genome TGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTG tagataggcttttttttcacatctattacagcacgtgtctctcctttcagTGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTGgtgggtagctcaatgacactgttttaattccaaggcaatctaattttctc Alignment from GeneWise TGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTG tagataggcttttttttcacatctattacagcacgtgtctctcctttcagTGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTGgtgggtagctcaatgacactgttttaattccaaggcaatctaattttctc #### Noc3l_ID7673_2 --> 0 - 1 Original Alignment AGAAGAAATAAAAAGCAGGTCCCAAGCTTTCGCAAGTTGATAAAAACTAGTAAAGTGAAACTTGAAAACAAATTGAAAAATAAGCAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAGAGGAAACTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCCATTCCGCTGGAGGACCCAAAGAGCAAACGGCCAg atatatacttgcaaccttacctcttttacctctattattctcttacttagAGAAGAAATAAAAAGCAGGTCCCAAGCTTCCGCAAGCTAATAAAAACCAGTAAAGTGAAACTTGAAAATAAATTAAAAAACAAACAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAGGAGCAAAGGAAATTAAGGCAAGCTGTAAAAGATGCTGTGTCAAAAAAGCCAATTCAACTGGAGGATCCCAAGAGCAAACGGCCAggtgagtaatatctcccctcagggtctccaggttgcactactcaggtatat Alignment from CESAR AGAAGAAATAAAAAGCAGGTCCCAAGCTTTCGCAAGTTGATAAAAACTAGTAAAGTGAAACTTGAAAACAAATTGAAAAATAAGCAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAGAGGAAACTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCCATTCCGCTGGAGGACCCAAAGAGCAAACGGCCAg atatatacttgcaaccttacctcttttacctctattattctcttacttagAGAAGAAATAAAAAGCAGGTCCCAAGCTTCCGCAAGCTAATAAAAACCAGTAAAGTGAAACTTGAAAATAAATTAAAAAACAAACAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAGGAGCAAAGGAAATTAAGGCAAGCTGTAAAAGATGCTGTGTCAAAAAAGCCAATTCAACTGGAGGATCCCAAGAGCAAACGGCCAggtgagtaatatctcccctcagggtctccaggttgcactactcaggtatat Alignment from Spaln_aa2Genome AGAAGAAATAAAAAGCAGGTCCCAAGCTTTCGCAAGTTGATAAAAACTAGTAAAGTGAAACTTGAAAACAAATTGAAAAATAAGCAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAGAGGAAACTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCCATTCCGCTGGAGGACCCAAAGAGCAAACGGCCAG atatatacttgcaaccttacctcttttacctctattattctcttacttagAGAAGAAATAAAAAGCAGGTCCCAAGCTTCCGCAAGCTAATAAAAACCAGTAAAGTGAAACTTGAAAATAAATTAAAAAACAAACAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAGGAGCAAAGGAAATTAAGGCAAGCTGTAAAAGATGCTGTGTCAAAAAAGCCAATTCAACTGGAGGATCCCAAGAGCAAACGGCCAGgtgagtaatatctcccctcagggtctccaggttgcactactcaggtatat Alignment from Spaln_nt2Genome AGAAGAAATAAAAAGCAGGTCCCAAGCTTTCGCAAGTTGATAAAAACTAGTAAAGTGAAACTTGAAAACAAATTGAAAAATAAGCAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAGAGGAAACTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCCATTCCGCTGGAGGACCCAAAGAGCAAACGGCCAG atatatacttgcaaccttacctcttttacctctattattctcttacttagAGAAGAAATAAAAAGCAGGTCCCAAGCTTCCGCAAGCTAATAAAAACCAGTAAAGTGAAACTTGAAAATAAATTAAAAAACAAACAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAGGAGCAAAGGAAATTAAGGCAAGCTGTAAAAGATGCTGTGTCAAAAAAGCCAATTCAACTGGAGGATCCCAAGAGCAAACGGCCAGgtgagtaatatctcccctcagggtctccaggttgcactactcaggtatat Alignment from Pairagon GAGAAGAAATAAAAAGCAGGTCCCAAGCTTTCGCAAGTTGATAAAAACTAGTAAAGTGAAACTTGAAAACAAATTGAAAAATAAGCAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAGAGGAAACTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCCATTCCGCTGGAGGACCCAAAGAGCAAACGGCCAG atatatacttgcaaccttacctcttttacctctattattctcttacttaGAGAAGAAATAAAAAGCAGGTCCCAAGCTTCCGCAAGCTAATAAAAACCAGTAAAGTGAAACTTGAAAATAAATTAAAAAACAAACAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAGGAGCAAAGGAAATTAAGGCAAGCTGTAAAAGATGCTGTGTCAAAAAAGCCAATTCAACTGGAGGATCCCAAGAGCAAACGGCCAGgtgagtaatatctcccctcagggtctccaggttgcactactcaggtatat Alignment from Exonerate_protein2genome AGAAGAAATAAAAAGCAGGTCCCAAGCTTTCGCAAGTTGATAAAAACTAGTAAAGTGAAACTTGAAAACAAATTGAAAAATAAGCAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAGAGGAAACTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCCATTCCGCTGGAGGACCCAAAGAGCAAACGGCCAG atatatacttgcaaccttacctcttttacctctattattctcttacttagAGAAGAAATAAAAAGCAGGTCCCAAGCTTCCGCAAGCTAATAAAAACCAGTAAAGTGAAACTTGAAAATAAATTAAAAAACAAACAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAGGAGCAAAGGAAATTAAGGCAAGCTGTAAAAGATGCTGTGTCAAAAAAGCCAATTCAACTGGAGGATCCCAAGAGCAAACGGCCAGgtgagtaatatctcccctcagggtctccaggttgcactactcaggtatat Alignment from Exonerate_coding2genome AGAAGAAATAAAAAGCAGGTCCCAAGCTTTCGCAAGTTGATAAAAACTAGTAAAGTGAAACTTGAAAACAAATTGAAAAATAAGCAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAGAGGAAACTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCCATTCCGCTGGAGGACCCAAAGAGCAAACGGCCAG atatatacttgcaaccttacctcttttacctctattattctcttacttagAGAAGAAATAAAAAGCAGGTCCCAAGCTTCCGCAAGCTAATAAAAACCAGTAAAGTGAAACTTGAAAATAAATTAAAAAACAAACAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAGGAGCAAAGGAAATTAAGGCAAGCTGTAAAAGATGCTGTGTCAAAAAAGCCAATTCAACTGGAGGATCCCAAGAGCAAACGGCCAGgtgagtaatatctcccctcagggtctccaggttgcactactcaggtatat Alignment from GeneWise AAGGCGAGAAGAAATAAAAAGCAGGTCCCAAGCTTTCGCAAGTTGATAAAAACTAGTAAAGTGAAACTTGAAAACAAATTGAAAAATAAGCAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAGAGGAAACTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCCATTCCGCTGGAGGACCCAAAGAGCAAACGGCCAG atatatacttgcaaccttacctcttttacctctattattctcttacttag------AGAAGAAATAAAAAGCAGGTCCCAAGCTTCCGCAAGCTAATAAAAACCAGTAAAGTGAAACTTGAAAATAAATTAAAAAACAAACAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAGGAGCAAAGGAAATTAAGGCAAGCTGTAAAAGATGCTGTGTCAAAAAAGCCAATTCAACTGGAGGATCCCAAGAGCAAACGGCCAGgtgagtaatatctcccctcagggtctccaggttgcactactcaggtatat #### Npas4_ID775_6 --> 2 - 2 Original Alignment tgGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCag gtagatggcctgatagcacttgagatgtaatgtgttgatttaatccacagttGCTGAAAGTGGGGATATCCAGGCTGAGATGCTAGTAAGGCTGCAGGCCAAGCATGGAGGGTGGACATGGATTTATTGCATGTTATGCTCAGAGGGACCAGAAGGACCTTTTGCTGCCAATAATTATCCTAATaggtaggatgggttccaccagacgaatgacagctgctgtatttggttggtaa Alignment from CESAR tgGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCag gtagatggcctgatagcacttgagatgtaatgtgttgatttaatccacagttGCTGAAAGTGGGGATATCCAGGCTGAGATGCTAGTAAGGCTGCAGGCCAAGCATGGAGGGTGGACATGGATTTATTGCATGTTATGCTCAGAGGGACCAGAAGGACCTTTTGCTGCCAATAATTATCCTAATaggtaggatgggttccaccagacgaatgacagctgctgtatttggttggtaa Alignment from Spaln_aa2Genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtagatggcctgatagcacttgagatgtaatgtgttgatttaatccacagTTGCTGAAAGTGGGGATATCCAGGCTGAGATGCTAGTAAGGCTGCAGGCCAAGCATGGAGGGTGGACATGGATTTATTGCATGTTATGCTCAGAGGGACCAGAAGGACCTTTTGCTGCCAATAATTATCCTAATAGgtaggatgggttccaccagacgaatgacagctgctgtatttggttggtaa Alignment from Spaln_nt2Genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtagatggcctgatagcacttgagatgtaatgtgttgatttaatccacagTTGCTGAAAGTGGGGATATCCAGGCTGAGATGCTAGTAAGGCTGCAGGCCAAGCATGGAGGGTGGACATGGATTTATTGCATGTTATGCTCAGAGGGACCAGAAGGACCTTTTGCTGCCAATAATTATCCTAATAGgtaggatgggttccaccagacgaatgacagctgctgtatttggttggtaa Alignment from Pairagon TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtagatggcctgatagcacttgagatgtaatgtgttgatttaatccacagTTGCTGAAAGTGGGGATATCCAGGCTGAGATGCTAGTAAGGCTGCAGGCCAAGCATGGAGGGTGGACATGGATTTATTGCATGTTATGCTCAGAGGGACCAGAAGGACCTTTTGCTGCCAATAATTATCCTAATAGgtaggatgggttccaccagacgaatgacagctgctgtatttggttggtaa Alignment from Exonerate_protein2genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtagatggcctgatagcacttgagatgtaatgtgttgatttaatccacagTTGCTGAAAGTGGGGATATCCAGGCTGAGATGCTAGTAAGGCTGCAGGCCAAGCATGGAGGGTGGACATGGATTTATTGCATGTTATGCTCAGAGGGACCAGAAGGACCTTTTGCTGCCAATAATTATCCTAATAGgtaggatgggttccaccagacgaatgacagctgctgtatttggttggtaa Alignment from Exonerate_coding2genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtagatggcctgatagcacttgagatgtaatgtgttgatttaatccacagTTGCTGAAAGTGGGGATATCCAGGCTGAGATGCTAGTAAGGCTGCAGGCCAAGCATGGAGGGTGGACATGGATTTATTGCATGTTATGCTCAGAGGGACCAGAAGGACCTTTTGCTGCCAATAATTATCCTAATAGgtaggatgggttccaccagacgaatgacagctgctgtatttggttggtaa Alignment from GeneWise TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtagatggcctgatagcacttgagatgtaatgtgttgatttaatccacagTTGCTGAAAGTGGGGATATCCAGGCTGAGATGCTAGTAAGGCTGCAGGCCAAGCATGGAGGGTGGACATGGATTTATTGCATGTTATGCTCAGAGGGACCAGAAGGACCTTTTGCTGCCAATAATTATCCTAATAGgtaggatgggttccaccagacgaatgacagctgctgtatttggttggtaa #### Npas4_ID777_4 --> 2 - 2 Original Alignment atCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAag cattttttgcttcatgtcaacttttgtgccctcctccctacactgtctagacCACATTTTTCATTGTAGATTCAATGCTTCAAAGTCCCTCCGAAGCCAGAGTTCTGCGAACAAACTTGTGCTTATAAGAGGACAGTTCCATGCTCTCCCACCTGGGGCACACTGGGCAGAAAATCCTGTGTTCACTGCCTTTTGTACACCACCAAAGCCAAGGCCCCGA------CCTGGTCCCGGGCCAAGCTCAGGCCCTGCTTCCCTTTTT---GCCATGTTTCAGAGTCGGCATGCGAAT---TCAGCTCTACTCGATGTTTCTGAAgggtgggtcttaagcaaacaaagtgcagaaaaaaagggcacattatattcac Alignment from CESAR atCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAag cattttttgcttcatgtcaacttttgtgccctcctccctacactgtctagacCACATTTTTCATTGTAGATTCAATGCTTCAAAGTCCCTCCGAAGCCAGAGTTCTGCGAACAAACTTGTGCTTATAAGAGGACAGTTCCATGCTCTCCCACCTGGGGCACACTGGGCAGAAAATCCTGTGTTCACTGCCTTTTGTACACCACCAAAGCCAAGGCCCCGACCTGGTCCCGGGCCAAGCTCAGGC------CCTGCTTCCCTTTTT---GCCATGTTTCAGAGTCGGCATGCG---AATTCAGCTCTACTCGATGTTTCTGAAgggtgggtcttaagcaaacaaagtgcagaaaaaaagggcacattatattcac Alignment from Spaln_aa2Genome ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG cattttttgcttcatgtcaacttttgtgccctcctccctacactgtctagACCACATTTTTCATTGTAGATTCAATGCTTCAAAGTCCCTCCGAAGCCAGAGTTCTGCGAACAAACTTGTGCTTATAAGAGGACAGTTCCATGCTCTCCCACCTGGGGCACACTGGGCAGAAAATCCTGTGTTCACTGCCTTTTGTACACCACCAAAGCCAAGGCCCCGACCTGGT------CCCGGGCCAAGCTCAGGCCCTGCTTCCCTTTTT---GCCATGTTTCAGAGTCGGCATGCG---AATTCAGCTCTACTCGATGTTTCTGAAGGgtgggtcttaagcaaacaaagtgcagaaaaaaagggcacattatattcac Alignment from Spaln_nt2Genome ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG cattttttgcttcatgtcaacttttgtgccctcctccctacactgtctagACCACATTTTTCATTGTAGATTCAATGCTTCAAAGTCCCTCCGAAGCCAGAGTTCTGCGAACAAACTTGTGCTTATAAGAGGACAGTTCCATGCTCTCCCACCTGGGGCACACTGGGCAGAAAATCCTGTGTTCACTGCCTTTTGTACACCACCAAAGCCAAGGCCCCGACCTGGTCCCGGGCCAAGCTCAGGC------CCTGCTTCCCTTT---TTGCCATGTTTCAGAGTCGGCATGC---GAATTCAGCTCTACTCGATGTTTCTGAAGGgtgggtcttaagcaaacaaagtgcagaaaaaaagggcacattatattcac Alignment from Pairagon ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCC----TGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG cattttttgcttcatgtcaacttttgtgccctcctccctacactgtctagACCACATTTTTCATTGTAGATTCAATGCTTCAAAGTCCCTCCGAAGCCAGAGTTCTGCGAACAAACTTGTGCTTATAAGAGGACAGTTCCATGCTCTCCCACCTGGGGCACACTGGGCAGAAAATCCTGTGTTCACTGCCTTTTGTACACCACCAAAGCCAAGGCCCCGACCTGGTCCCGGGCCAAGCTCAGGCCCTG-------------CTTCCCTTTTTGCCATGTTTCAGAGTCGGCATGC---GAATTCAGCTCTACTCGATGTTTCTGAAGGgtgggtcttaagcaaacaaagtgcagaaaaaaagggcacattatattcac Alignment from Exonerate_protein2genome ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG cattttttgcttcatgtcaacttttgtgccctcctccctacactgtctagACCACATTTTTCATTGTAGATTCAATGCTTCAAAGTCCCTCCGAAGCCAGAGTTCTGCGAACAAACTTGTGCTTATAAGAGGACAGTTCCATGCTCTCCCACCTGGGGCACACTGGGCAGAAAATCCTGTGTTCACTGCCTTTTGTACACCA------CCAAAGCCAAGGCCCCGACCTGGTCCCGGGCCAAGCTCAGGCCCTGCTTCCCTTTTT---GCCATGTTTCAGAGTCGGCATGCGAATTCA---GCTCTACTCGATGTTTCTGAAGGgtgggtcttaagcaaacaaagtgcagaaaaaaagggcacattatattcac Alignment from Exonerate_coding2genome ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG cattttttgcttcatgtcaacttttgtgccctcctccctacactgtctagACCACATTTTTCATTGTAGATTCAATGCTTCAAAGTCCCTCCGAAGCCAGAGTTCTGCGAACAAACTTGTGCTTATAAGAGGACAGTTCCATGCTCTCCCACCTGGGGCACACTGGGCAGAAAATCCTGTGTTCACTGCCTTTTGTACACCA------CCAAAGCCAAGGCCCCGACCTGGTCCCGGGCCAAGCTCAGGCCCTGCTTCCCTTTTT---GCCATGTTTCAGAGTCGGCATGCGAATTCA---GCTCTACTCGATGTTTCTGAAGGgtgggtcttaagcaaacaaagtgcagaaaaaaagggcacattatattcac Alignment from GeneWise ATCGCCTTTTCCGTTGTCGATTCAACACCTCCAAGTCCCTCCGGCGCCAGAGTTCAGGAAACAAACTGGTGCTTATTCGAGGTCGATTCCATGCTCACCCACCTGGGGCCTACTGGGCAGGAAACCCTGTGTTCACCGCTTTCTGCGCCCCACTGGAGCCAAGACCCCGCCCTGGCCCCGGCCCTGGCCCTGGCCCTGGTCCTGCTTCTCTCTTCCTGGCCATGTTCCAGAGCCGGCATGCTAAGGACCTAGCCCTACTGGACGTTTCTGAAAG cattttttgcttcatgtcaacttttgtgccctcctccctacactgtctagACCACATTTTTCATTGTAGATTCAATGCTTCAAAGTCCCTCCGAAGCCAGAGTTCTGCGAACAAACTTGTGCTTATAAGAGGACAGTTCCATGCTCTCCCACCTGGGGCACACTGGGCAGAAAATCCTGTGTTCACTGCCTTTTGTACACCA------CCAAAGCCAAGGCCCCGACCTGGTCCCGGGCCAAGCTCAGGCCCTGCTTCCCTTTTT---GCCATGTTTCAGAGTCGGCATGCGAATTCA---GCTCTACTCGATGTTTCTGAAGGgtgggtcttaagcaaacaaagtgcagaaaaaaagggcacattatattcac #### Npas4_ID778_3 --> 0 - 1 Original Alignment GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTg gccaggtcctatcatcaagtgccctcatttctctatacccttctttgcagGTGGACTTAGTGGCACAGGGAGTCAGTATCTACGATATTCTTGACCCTACTGACCATCTAACTGTGTGTCAACAACTCACAATGCCCTCTGCTCTTGATGCAggtaagattatcataaacataatttccaatgtgtttagtgcacttgctaat Alignment from CESAR GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTg gccaggtcctatcatcaagtgccctcatttctctatacccttctttgcagGTGGACTTAGTGGCACAGGGAGTCAGTATCTACGATATTCTTGACCCTACTGACCATCTAACTGTGTGTCAACAACTCACAATGCCCTCTGCTCTTGATGCAggtaagattatcataaacataatttccaatgtgtttagtgcacttgctaat Alignment from Spaln_aa2Genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG gccaggtcctatcatcaagtgccctcatttctctatacccttctttgcagGTGGACTTAGTGGCACAGGGAGTCAGTATCTACGATATTCTTGACCCTACTGACCATCTAACTGTGTGTCAACAACTCACAATGCCCTCTGCTCTTGATGCAGgtaagattatcataaacataatttccaatgtgtttagtgcacttgctaat Alignment from Spaln_nt2Genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG gccaggtcctatcatcaagtgccctcatttctctatacccttctttgcagGTGGACTTAGTGGCACAGGGAGTCAGTATCTACGATATTCTTGACCCTACTGACCATCTAACTGTGTGTCAACAACTCACAATGCCCTCTGCTCTTGATGCAGgtaagattatcataaacataatttccaatgtgtttagtgcacttgctaat Alignment from Pairagon GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG gccaggtcctatcatcaagtgccctcatttctctatacccttctttgcagGTGGACTTAGTGGCACAGGGAGTCAGTATCTACGATATTCTTGACCCTACTGACCATCTAACTGTGTGTCAACAACTCACAATGCCCTCTGCTCTTGATGCAGgtaagattatcataaacataatttccaatgtgtttagtgcacttgctaat Alignment from Exonerate_protein2genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG gccaggtcctatcatcaagtgccctcatttctctatacccttctttgcagGTGGACTTAGTGGCACAGGGAGTCAGTATCTACGATATTCTTGACCCTACTGACCATCTAACTGTGTGTCAACAACTCACAATGCCCTCTGCTCTTGATGCAGgtaagattatcataaacataatttccaatgtgtttagtgcacttgctaat Alignment from Exonerate_coding2genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG gccaggtcctatcatcaagtgccctcatttctctatacccttctttgcagGTGGACTTAGTGGCACAGGGAGTCAGTATCTACGATATTCTTGACCCTACTGACCATCTAACTGTGTGTCAACAACTCACAATGCCCTCTGCTCTTGATGCAGgtaagattatcataaacataatttccaatgtgtttagtgcacttgctaat Alignment from GeneWise GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG gccaggtcctatcatcaagtgccctcatttctctatacccttctttgcagGTGGACTTAGTGGCACAGGGAGTCAGTATCTACGATATTCTTGACCCTACTGACCATCTAACTGTGTGTCAACAACTCACAATGCCCTCTGCTCTTGATGCAGgtaagattatcataaacataatttccaatgtgtttagtgcacttgctaat #### Npm3_ID9576_4 --> 0 - 1 Original Alignment CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCg tgatcgttgatacccattaaaaagtactttacctctgctgtatctctcagCTTGGTGTTGATGATCTCCAACTTCAACCACCAGTTTCCTTTCGATTGAGGTCAGGTTCAGGTCCAGTTCGAATC---------CATCACATTggtaagtgggcagaattgtgtggactattatgcagtgagttgtcagcaaca Alignment from CESAR CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCg tgatcgttgatacccattaaaaagtactttacctctgctgtatctctcagCTTGGTGTTGATGATCTCCAACTTCAACCACCAGTTTCCTTTCGATTGAGGTCAGGTTCAGGTCCAGTTCGAATC---------CATCACATTggtaagtgggcagaattgtgtggactattatgcagtgagttgtcagcaaca Alignment from Spaln_aa2Genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG tgatcgttgatacccattaaaaagtactttacctctgctgtatctctcagCTTGGTGTTGATGATCTCCAACTTCAACCACCAGTTTCCTTTCGATTGAGGTCAGGTTCAGGTCCAGTTCGAATC---------CATCACATTGgtaagtgggcagaattgtgtggactattatgcagtgagttgtcagcaaca Alignment from Spaln_nt2Genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG tgatcgttgatacccattaaaaagtactttacctctgctgtatctctcagCTTGGTGTTGATGATCTCCAACTTCAACCACCAGTTTCCTTTCGATTGAGGTCAGGTTCAGGTCCAGTTCGAATC---------CATCACATTGgtaagtgggcagaattgtgtggactattatgcagtgagttgtcagcaaca Alignment from Pairagon CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG tgatcgttgatacccattaaaaagtactttacctctgctgtatctctcagCTTGGTGTTGATGATCTCCAACTTCAACCACCAGTTTCCTTTCGATTGAGGTCAGGTTCAGGTCCAGTTCGAATC---------CATCACATTGgtaagtgggcagaattgtgtggactattatgcagtgagttgtcagcaaca Alignment from Exonerate_protein2genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG tgatcgttgatacccattaaaaagtactttacctctgctgtatctctcagCTTGGTGTTGATGATCTCCAACTTCAACCACCAGTTTCCTTTCGATTGAGGTCAGGTTCAGGTCCAGTTCGAATC---------CATCACATTGgtaagtgggcagaattgtgtggactattatgcagtgagttgtcagcaaca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG tgatcgttgatacccattaaaaagtactttacctctgctgtatctctcagCTTGGTGTTGATGATCTCCAACTTCAACCACCAGTTTCCTTTCGATTGAGGTCAGGTTCAGGTCCAGTTCGAATC---------CATCACATTGgtaagtgggcagaattgtgtggactattatgcagtgagttgtcagcaaca #### Nrxn2_ID1751_7 --> 0 - 0 Original Alignment GTGACCATCTCGGTGGACGGGATCCTGACCACCACAGGCTACACGCAGGAGGATTACACCATGCTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACAGCCGACCTGCCTGGCTCACCTGTCAGCAACAACTTCATGGGCTGCCTCAAGGAC ttttgtagcagaaaatattggttgtttatatctgtttgttgcttttttagGTGACAATCTCTGTTGACGGCATTCTAACCACCACTGGCTACACACAGGAGGACTACAACATGTTGGGATCTGATGACTTCTTTTATCTTGGTGGCAGCCCCAACACAGCAGACAGGCCTGGCTCACCTATTAGCAACAACTTCATGGGGTGCCTCACGGATgtgagtgtgcattatggttgttcaatagctagacttctttggtttaaggt Alignment from CESAR GTGACCATCTCGGTGGACGGGATCCTGACCACCACAGGCTACACGCAGGAGGATTACACCATGCTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACAGCCGACCTGCCTGGCTCACCTGTCAGCAACAACTTCATGGGCTGCCTCAAGGAC ttttgtagcagaaaatattggttgtttatatctgtttgttgcttttttagGTGACAATCTCTGTTGACGGCATTCTAACCACCACTGGCTACACACAGGAGGACTACAACATGTTGGGATCTGATGACTTCTTTTATCTTGGTGGCAGCCCCAACACAGCAGACAGGCCTGGCTCACCTATTAGCAACAACTTCATGGGGTGCCTCACGGATgtgagtgtgcattatggttgttcaatagctagacttctttggtttaaggt Alignment from Spaln_aa2Genome GTGACCATCTCGGTGGACGGGATCCTGACCACCACAGGCTACACGCAGGAGGATTACACCATGCTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACAGCCGACCTGCCTGGCTCACCTGTCAGCAACAACTTCATGGGCTGCCTCAAGGAC ttttgtagcagaaaatattggttgtttatatctgtttgttgcttttttagGTGACAATCTCTGTTGACGGCATTCTAACCACCACTGGCTACACACAGGAGGACTACAACATGTTGGGATCTGATGACTTCTTTTATCTTGGTGGCAGCCCCAACACAGCAGACAGGCCTGGCTCACCTATTAGCAACAACTTCATGGGGTGCCTCACGGATgtgagtgtgcattatggttgttcaatagctagacttctttggtttaaggt Alignment from Spaln_nt2Genome GTGACCATCTCGGTGGACGGGATCCTGACCACCACAGGCTACACGCAGGAGGATTACACCATGCTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACAGCCGACCTGCCTGGCTCACCTGTCAGCAACAACTTCATGGGCTGCCTCAAGGAC ttttgtagcagaaaatattggttgtttatatctgtttgttgcttttttagGTGACAATCTCTGTTGACGGCATTCTAACCACCACTGGCTACACACAGGAGGACTACAACATGTTGGGATCTGATGACTTCTTTTATCTTGGTGGCAGCCCCAACACAGCAGACAGGCCTGGCTCACCTATTAGCAACAACTTCATGGGGTGCCTCACGGATgtgagtgtgcattatggttgttcaatagctagacttctttggtttaaggt Alignment from Pairagon GTGACCATCTCGGTGGACGGGATCCTGACCACCACAGGCTACACGCAGGAGGATTACACCATGCTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACAGCCGACCTGCCTGGCTCACCTGTCAGCAACAACTTCATGGGCTGCCTCAAGGAC ttttgtagcagaaaatattggttgtttatatctgtttgttgcttttttagGTGACAATCTCTGTTGACGGCATTCTAACCACCACTGGCTACACACAGGAGGACTACAACATGTTGGGATCTGATGACTTCTTTTATCTTGGTGGCAGCCCCAACACAGCAGACAGGCCTGGCTCACCTATTAGCAACAACTTCATGGGGTGCCTCACGGATgtgagtgtgcattatggttgttcaatagctagacttctttggtttaaggt Alignment from Exonerate_protein2genome GTGACCATCTCGGTGGACGGGATCCTGACCACCACAGGCTACACGCAGGAGGATTACACCATGCTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACAGCCGACCTGCCTGGCTCACCTGTCAGCAACAACTTCATGGGCTGCCTCAAGGAC ttttgtagcagaaaatattggttgtttatatctgtttgttgcttttttagGTGACAATCTCTGTTGACGGCATTCTAACCACCACTGGCTACACACAGGAGGACTACAACATGTTGGGATCTGATGACTTCTTTTATCTTGGTGGCAGCCCCAACACAGCAGACAGGCCTGGCTCACCTATTAGCAACAACTTCATGGGGTGCCTCACGGATgtgagtgtgcattatggttgttcaatagctagacttctttggtttaaggt Alignment from Exonerate_coding2genome GTGACCATCTCGGTGGACGGGATCCTGACCACCACAGGCTACACGCAGGAGGATTACACCATGCTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACAGCCGACCTGCCTGGCTCACCTGTCAGCAACAACTTCATGGGCTGCCTCAAGGAC ttttgtagcagaaaatattggttgtttatatctgtttgttgcttttttagGTGACAATCTCTGTTGACGGCATTCTAACCACCACTGGCTACACACAGGAGGACTACAACATGTTGGGATCTGATGACTTCTTTTATCTTGGTGGCAGCCCCAACACAGCAGACAGGCCTGGCTCACCTATTAGCAACAACTTCATGGGGTGCCTCACGGATgtgagtgtgcattatggttgttcaatagctagacttctttggtttaaggt Alignment from GeneWise GTGACCATCTCGGTGGACGGGATCCTGACCACCACAGGCTACACGCAGGAGGATTACACCATGCTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACAGCCGACCTGCCTGGCTCACCTGTCAGCAACAACTTCATGGGCTGCCTCAAGGAC ttttgtagcagaaaatattggttgtttatatctgtttgttgcttttttagGTGACAATCTCTGTTGACGGCATTCTAACCACCACTGGCTACACACAGGAGGACTACAACATGTTGGGATCTGATGACTTCTTTTATCTTGGTGGCAGCCCCAACACAGCAGACAGGCCTGGCTCACCTATTAGCAACAACTTCATGGGGTGCCTCACGGATgtgagtgtgcattatggttgttcaatagctagacttctttggtttaaggt #### Nrxn2_ID1765_15 --> 2 - 1 Original Alignment ggGAGTTGTATATCGGTGGCCTGAGCAAGAATATGTTCAGCAACCTGCCCAAGCTGGTGGCCTCTCGGGATGGCTTTCAAGGCTGCTTGGCTTCTGTGGACCTCAACGGACGCCTCCCAGACCTCATCGCTGACGCCCTGCACCGCATCGGGCAGGTGGAGAGGGGCTGTGATg tacaattgatgcccacagtggtgtgtttacccttcctgctgcgcctgcagggGAGTTGTATATTGGTAGTCTAAGCAAAAACATGTTCAGCAACCTGCCTAAACTGGTGGCCTCCCGGGATGGATTCCAAGGTTGTTTGACATCTGTAGATCTCAATGGACGTCTCCCAGATCTGATTGCTGATGCACTACACTGTGTTGGTCAGGTGGAGAGGGGCTGTGATggtaagcgccagtaatggaattgaagtgagtatcctcatacaaggtgtgtg Alignment from CESAR ggGAGTTGTATATCGGTGGCCTGAGCAAGAATATGTTCAGCAACCTGCCCAAGCTGGTGGCCTCTCGGGATGGCTTTCAAGGCTGCTTGGCTTCTGTGGACCTCAACGGACGCCTCCCAGACCTCATCGCTGACGCCCTGCACCGCATCGGGCAGGTGGAGAGGGGCTGTGATg tacaattgatgcccacagtggtgtgtttacccttcctgctgcgcctgcagggGAGTTGTATATTGGTAGTCTAAGCAAAAACATGTTCAGCAACCTGCCTAAACTGGTGGCCTCCCGGGATGGATTCCAAGGTTGTTTGACATCTGTAGATCTCAATGGACGTCTCCCAGATCTGATTGCTGATGCACTACACTGTGTTGGTCAGGTGGAGAGGGGCTGTGATggtaagcgccagtaatggaattgaagtgagtatcctcatacaaggtgtgtg Alignment from Spaln_aa2Genome GGGAGTTGTATATCGGTGGCCTGAGCAAGAATATGTTCAGCAACCTGCCCAAGCTGGTGGCCTCTCGGGATGGCTTTCAAGGCTGCTTGGCTTCTGTGGACCTCAACGGACGCCTCCCAGACCTCATCGCTGACGCCCTGCACCGCATCGGGCAGGTGGAGAGGGGCTGTGATG tacaattgatgcccacagtggtgtgtttacccttcctgctgcgcctgcagGGGAGTTGTATATTGGTAGTCTAAGCAAAAACATGTTCAGCAACCTGCCTAAACTGGTGGCCTCCCGGGATGGATTCCAAGGTTGTTTGACATCTGTAGATCTCAATGGACGTCTCCCAGATCTGATTGCTGATGCACTACACTGTGTTGGTCAGGTGGAGAGGGGCTGTGATGgtaagcgccagtaatggaattgaagtgagtatcctcatacaaggtgtgtg Alignment from Spaln_nt2Genome GGGAGTTGTATATCGGTGGCCTGAGCAAGAATATGTTCAGCAACCTGCCCAAGCTGGTGGCCTCTCGGGATGGCTTTCAAGGCTGCTTGGCTTCTGTGGACCTCAACGGACGCCTCCCAGACCTCATCGCTGACGCCCTGCACCGCATCGGGCAGGTGGAGAGGGGCTGTGATG tacaattgatgcccacagtggtgtgtttacccttcctgctgcgcctgcagGGGAGTTGTATATTGGTAGTCTAAGCAAAAACATGTTCAGCAACCTGCCTAAACTGGTGGCCTCCCGGGATGGATTCCAAGGTTGTTTGACATCTGTAGATCTCAATGGACGTCTCCCAGATCTGATTGCTGATGCACTACACTGTGTTGGTCAGGTGGAGAGGGGCTGTGATGgtaagcgccagtaatggaattgaagtgagtatcctcatacaaggtgtgtg Alignment from Pairagon GGGAGTTGTATATCGGTGGCCTGAGCAAGAATATGTTCAGCAACCTGCCCAAGCTGGTGGCCTCTCGGGATGGCTTTCAAGGCTGCTTGGCTTCTGTGGACCTCAACGGACGCCTCCCAGACCTCATCGCTGACGCCCTGCACCGCATCGGGCAGGTGGAGAGGGGCTGTGATG tacaattgatgcccacagtggtgtgtttacccttcctgctgcgcctgcagGGGAGTTGTATATTGGTAGTCTAAGCAAAAACATGTTCAGCAACCTGCCTAAACTGGTGGCCTCCCGGGATGGATTCCAAGGTTGTTTGACATCTGTAGATCTCAATGGACGTCTCCCAGATCTGATTGCTGATGCACTACACTGTGTTGGTCAGGTGGAGAGGGGCTGTGATGgtaagcgccagtaatggaattgaagtgagtatcctcatacaaggtgtgtg Alignment from Exonerate_protein2genome GGGAGTTGTATATCGGTGGCCTGAGCAAGAATATGTTCAGCAACCTGCCCAAGCTGGTGGCCTCTCGGGATGGCTTTCAAGGCTGCTTGGCTTCTGTGGACCTCAACGGACGCCTCCCAGACCTCATCGCTGACGCCCTGCACCGCATCGGGCAGGTGGAGAGGGGCTGTGATG tacaattgatgcccacagtggtgtgtttacccttcctgctgcgcctgcagGGGAGTTGTATATTGGTAGTCTAAGCAAAAACATGTTCAGCAACCTGCCTAAACTGGTGGCCTCCCGGGATGGATTCCAAGGTTGTTTGACATCTGTAGATCTCAATGGACGTCTCCCAGATCTGATTGCTGATGCACTACACTGTGTTGGTCAGGTGGAGAGGGGCTGTGATGgtaagcgccagtaatggaattgaagtgagtatcctcatacaaggtgtgtg Alignment from Exonerate_coding2genome GGGAGTTGTATATCGGTGGCCTGAGCAAGAATATGTTCAGCAACCTGCCCAAGCTGGTGGCCTCTCGGGATGGCTTTCAAGGCTGCTTGGCTTCTGTGGACCTCAACGGACGCCTCCCAGACCTCATCGCTGACGCCCTGCACCGCATCGGGCAGGTGGAGAGGGGCTGTGATG tacaattgatgcccacagtggtgtgtttacccttcctgctgcgcctgcagGGGAGTTGTATATTGGTAGTCTAAGCAAAAACATGTTCAGCAACCTGCCTAAACTGGTGGCCTCCCGGGATGGATTCCAAGGTTGTTTGACATCTGTAGATCTCAATGGACGTCTCCCAGATCTGATTGCTGATGCACTACACTGTGTTGGTCAGGTGGAGAGGGGCTGTGATGgtaagcgccagtaatggaattgaagtgagtatcctcatacaaggtgtgtg Alignment from GeneWise GGGAGTTGTATATCGGTGGCCTGAGCAAGAATATGTTCAGCAACCTGCCCAAGCTGGTGGCCTCTCGGGATGGCTTTCAAGGCTGCTTGGCTTCTGTGGACCTCAACGGACGCCTCCCAGACCTCATCGCTGACGCCCTGCACCGCATCGGGCAGGTGGAGAGGGGCTGTGATG tacaattgatgcccacagtggtgtgtttacccttcctgctgcgcctgcagGGGAGTTGTATATTGGTAGTCTAAGCAAAAACATGTTCAGCAACCTGCCTAAACTGGTGGCCTCCCGGGATGGATTCCAAGGTTGTTTGACATCTGTAGATCTCAATGGACGTCTCCCAGATCTGATTGCTGATGCACTACACTGTGTTGGTCAGGTGGAGAGGGGCTGTGATGgtaagcgccagtaatggaattgaagtgagtatcctcatacaaggtgtgtg #### Nrxn2_ID1781_20 --> 2 - 0 Original Alignment gaCGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCCGGCCTCTACTACAATGGGCTCAAGGTACTGGCGCTGGCCGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCCGTCCGTGCTGCTCAGTGCTGAGACCACTGCCACCACTCTGCTGGCCGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAG ctttgtggccctccatcgttcccgaaaacctgttatttcatttttgatagggCGCCAGTTAACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGACGTCCCTTCCAGGGCCAGGTGTCTGGCCTATACTACAATGGGCTCAAGGTACTGGCCCTGGCTGCAGAGAGTGACCCCAATGTGCGGACTGAAGGCCACTTACGGCTAGTCGGGGAGGGGCTGTCCGTGCTGCTCAGTGCTGAGACCACTGGCACCACTCTGCTGGCTGACATGGCCACCACCATCACGGAGACCACCACCACCATGGCCACTACCAGTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAGgtgactacactatacgtatcatgcacagttacatcctcagcaggctgagc Alignment from CESAR gaCGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCCGGCCTCTACTACAATGGGCTCAAGGTACTGGCGCTGGCCGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCCGTCCGTGCTGCTCAGTGCTGAGACCACTGCCACCACTCTGCTGGCCGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAG ctttgtggccctccatcgttcccgaaaacctgttatttcatttttgatagggCGCCAGTTAACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGACGTCCCTTCCAGGGCCAGGTGTCTGGCCTATACTACAATGGGCTCAAGGTACTGGCCCTGGCTGCAGAGAGTGACCCCAATGTGCGGACTGAAGGCCACTTACGGCTAGTCGGGGAGGGGCTGTCCGTGCTGCTCAGTGCTGAGACCACTGGCACCACTCTGCTGGCTGACATGGCCACCACCATCACGGAGACCACCACCACCATGGCCACTACCAGTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAGgtgactacactatacgtatcatgcacagttacatcctcagcaggctgagc Alignment from Spaln_aa2Genome GACGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCCGGCCTCTACTACAATGGGCTCAAGGTACTGGCGCTGGCCGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCCGTCCGTGCTGCTCAGTGCTGAGACCACTGCCACCACTCTGCTGGCCGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAG ctttgtggccctccatcgttcccgaaaacctgttatttcatttttgatagGGCGCCAGTTAACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGACGTCCCTTCCAGGGCCAGGTGTCTGGCCTATACTACAATGGGCTCAAGGTACTGGCCCTGGCTGCAGAGAGTGACCCCAATGTGCGGACTGAAGGCCACTTACGGCTAGTCGGGGAGGGGCTGTCCGTGCTGCTCAGTGCTGAGACCACTGGCACCACTCTGCTGGCTGACATGGCCACCACCATCACGGAGACCACCACCACCATGGCCACTACCAGTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAGgtgactacactatacgtatcatgcacagttacatcctcagcaggctgagc Alignment from Spaln_nt2Genome GACGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCCGGCCTCTACTACAATGGGCTCAAGGTACTGGCGCTGGCCGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCCGTCCGTGCTGCTCAGTGCTGAGACCACTGCCACCACTCTGCTGGCCGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAG ctttgtggccctccatcgttcccgaaaacctgttatttcatttttgatagGGCGCCAGTTAACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGACGTCCCTTCCAGGGCCAGGTGTCTGGCCTATACTACAATGGGCTCAAGGTACTGGCCCTGGCTGCAGAGAGTGACCCCAATGTGCGGACTGAAGGCCACTTACGGCTAGTCGGGGAGGGGCTGTCCGTGCTGCTCAGTGCTGAGACCACTGGCACCACTCTGCTGGCTGACATGGCCACCACCATCACGGAGACCACCACCACCATGGCCACTACCAGTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAGgtgactacactatacgtatcatgcacagttacatcctcagcaggctgagc Alignment from Pairagon GACGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCCGGCCTCTACTACAATGGGCTCAAGGTACTGGCGCTGGCCGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCCGTCCGTGCTGCTCAGTGCTGAGACCACTGCCACCACTCTGCTGGCCGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAG ctttgtggccctccatcgttcccgaaaacctgttatttcatttttgatagGGCGCCAGTTAACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGACGTCCCTTCCAGGGCCAGGTGTCTGGCCTATACTACAATGGGCTCAAGGTACTGGCCCTGGCTGCAGAGAGTGACCCCAATGTGCGGACTGAAGGCCACTTACGGCTAGTCGGGGAGGGGCTGTCCGTGCTGCTCAGTGCTGAGACCACTGGCACCACTCTGCTGGCTGACATGGCCACCACCATCACGGAGACCACCACCACCATGGCCACTACCAGTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAGgtgactacactatacgtatcatgcacagttacatcctcagcaggctgagc Alignment from Exonerate_protein2genome GACGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCCGGCCTCTACTACAATGGGCTCAAGGTACTGGCGCTGGCCGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCCGTCCGTGCTGCTCAGTGCTGAGACCACTGCCACCACTCTGCTGGCCGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAG ctttgtggccctccatcgttcccgaaaacctgttatttcatttttgatagGGCGCCAGTTAACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGACGTCCCTTCCAGGGCCAGGTGTCTGGCCTATACTACAATGGGCTCAAGGTACTGGCCCTGGCTGCAGAGAGTGACCCCAATGTGCGGACTGAAGGCCACTTACGGCTAGTCGGGGAGGGGCTGTCCGTGCTGCTCAGTGCTGAGACCACTGGCACCACTCTGCTGGCTGACATGGCCACCACCATCACGGAGACCACCACCACCATGGCCACTACCAGTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAGgtgactacactatacgtatcatgcacagttacatcctcagcaggctgagc Alignment from Exonerate_coding2genome ctttgtggccctccatcgttcccgaaaacctgttatttcatttttgatagggcgccagttaaccatcttcaacagccaggctgccatcaagatagggggccgggatcagggacgtcccttccagggccaggtgtctggcctatactacaatgggctcaaggtactggccctggctgcagagagtgaccccaatgtgcggactgaaggccacttacggctagtcggggaggggctgtccgtgctgctcagtgctgagaccactggcaccactctgctggctgacatggccaccaccatcacggagaccaccaccaccatggccactaccagtactcgccggggccgttcccccacaatgagggacagcaccacccaggtgactacactatacgtatcatgcacagttacatcctcagcaggctgagc Alignment from GeneWise GACGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCCGGCCTCTACTACAATGGGCTCAAGGTACTGGCGCTGGCCGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCCGTCCGTGCTGCTCAGTGCTGAGACCACTGCCACCACTCTGCTGGCCGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAG ctttgtggccctccatcgttcccgaaaacctgttatttcatttttgatagGGCGCCAGTTAACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGACGTCCCTTCCAGGGCCAGGTGTCTGGCCTATACTACAATGGGCTCAAGGTACTGGCCCTGGCTGCAGAGAGTGACCCCAATGTGCGGACTGAAGGCCACTTACGGCTAGTCGGGGAGGGGCTGTCCGTGCTGCTCAGTGCTGAGACCACTGGCACCACTCTGCTGGCTGACATGGCCACCACCATCACGGAGACCACCACCACCATGGCCACTACCAGTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAGgtgactacactatacgtatcatgcacagttacatcctcagcaggctgagc #### Nt5c2_ID10036_17 --> 0 - 0 Original Alignment AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG ggattgccaaaggactagatataggcacgtttttaactttcgctcaatagGAAGTAACTCATGATATGGATATGTGCTATGGCATGATGGGAAGTCTGTTCCGGAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCACGTCCTGgtgaggactggtccttatggctaacagatgatgcaacaccagagtcacta Alignment from CESAR AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG ggattgccaaaggactagatataggcacgtttttaactttcgctcaatagGAAGTAACTCATGATATGGATATGTGCTATGGCATGATGGGAAGTCTGTTCCGGAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCACGTCCTGgtgaggactggtccttatggctaacagatgatgcaacaccagagtcacta Alignment from Spaln_aa2Genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG ggattgccaaaggactagatataggcacgtttttaactttcgctcaatagGAAGTAACTCATGATATGGATATGTGCTATGGCATGATGGGAAGTCTGTTCCGGAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCACGTCCTGgtgaggactggtccttatggctaacagatgatgcaacaccagagtcacta Alignment from Spaln_nt2Genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG ggattgccaaaggactagatataggcacgtttttaactttcgctcaatagGAAGTAACTCATGATATGGATATGTGCTATGGCATGATGGGAAGTCTGTTCCGGAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCACGTCCTGgtgaggactggtccttatggctaacagatgatgcaacaccagagtcacta Alignment from Pairagon AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG ggattgccaaaggactagatataggcacgtttttaactttcgctcaatagGAAGTAACTCATGATATGGATATGTGCTATGGCATGATGGGAAGTCTGTTCCGGAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCACGTCCTGgtgaggactggtccttatggctaacagatgatgcaacaccagagtcacta Alignment from Exonerate_protein2genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG ggattgccaaaggactagatataggcacgtttttaactttcgctcaatagGAAGTAACTCATGATATGGATATGTGCTATGGCATGATGGGAAGTCTGTTCCGGAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCACGTCCTGgtgaggactggtccttatggctaacagatgatgcaacaccagagtcacta Alignment from Exonerate_coding2genome ggattgccaaaggactagatataggcacgtttttaactttcgctcaataggaagtaactcatgatatggatatgtgctatggcatgatgggaagtctgttccggagtagctcccagcagacactctttgccagcctagttatgcgttatgcagacctctacacatcctcattcattaacctactgtactacccattcagctacctcttcagagctgcccacgtcctggtgaggactggtccttatggctaacagatgatgcaacaccagagtcacta Alignment from GeneWise AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG ggattgccaaaggactagatataggcacgtttttaactttcgctcaatagGAAGTAACTCATGATATGGATATGTGCTATGGCATGATGGGAAGTCTGTTCCGGAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTAGTTATGCGTTATGCAGACCTCTACACATCCTCATTCATTAACCTACTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCACGTCCTGgtgaggactggtccttatggctaacagatgatgcaacaccagagtcacta #### Nt5c2_ID10044_9 --> 0 - 0 Original Alignment GGCTCCCTTAAGGAGAAGACGGTTGAAAATCTTGAGAAGTATGTCGTCAAGGAT aattgaacttggaattgtgacctccatgacacattatacttttttaacagGGCTCCCTTAAGGAGAAGACAGTTGAAAATCTTGAGAAATATGTTGTCAAGGATgtgagtggaaagccaatggggggttggcatatccctcctgtcgcttcttt Alignment from CESAR GGCTCCCTTAAGGAGAAGACGGTTGAAAATCTTGAGAAGTATGTCGTCAAGGAT aattgaacttggaattgtgacctccatgacacattatacttttttaacagGGCTCCCTTAAGGAGAAGACAGTTGAAAATCTTGAGAAATATGTTGTCAAGGATgtgagtggaaagccaatggggggttggcatatccctcctgtcgcttcttt Alignment from Spaln_aa2Genome GGCTCCCTTAAGGAGAAGACGGTTGAAAATCTTGAGAAGTATGTCGTCAAGGAT aattgaacttggaattgtgacctccatgacacattatacttttttaacagGGCTCCCTTAAGGAGAAGACAGTTGAAAATCTTGAGAAATATGTTGTCAAGGATgtgagtggaaagccaatggggggttggcatatccctcctgtcgcttcttt Alignment from Spaln_nt2Genome GGCTCCCTTAAGGAGAAGACGGTTGAAAATCTTGAGAAGTATGTCGTCAAGGAT aattgaacttggaattgtgacctccatgacacattatacttttttaacagGGCTCCCTTAAGGAGAAGACAGTTGAAAATCTTGAGAAATATGTTGTCAAGGATgtgagtggaaagccaatggggggttggcatatccctcctgtcgcttcttt Alignment from Pairagon GGCTCCCTTAAGGAGAAGACGGTTGAAAATCTTGAGAAGTATGTCGTCAAGGAT aattgaacttggaattgtgacctccatgacacattatacttttttaacagGGCTCCCTTAAGGAGAAGACAGTTGAAAATCTTGAGAAATATGTTGTCAAGGATgtgagtggaaagccaatggggggttggcatatccctcctgtcgcttcttt Alignment from Exonerate_protein2genome GGCTCCCTTAAGGAGAAGACGGTTGAAAATCTTGAGAAGTATGTCGTCAAGGAT aattgaacttggaattgtgacctccatgacacattatacttttttaacagGGCTCCCTTAAGGAGAAGACAGTTGAAAATCTTGAGAAATATGTTGTCAAGGATgtgagtggaaagccaatggggggttggcatatccctcctgtcgcttcttt Alignment from Exonerate_coding2genome GGCTCCCTTAAGGAGAAGACGGTTGAAAATCTTGAGAAGTATGTCGTCAAGGAT aattgaacttggaattgtgacctccatgacacattatacttttttaacagGGCTCCCTTAAGGAGAAGACAGTTGAAAATCTTGAGAAATATGTTGTCAAGGATgtgagtggaaagccaatggggggttggcatatccctcctgtcgcttcttt Alignment from GeneWise GGCTCCCTTAAGGAGAAGACGGTTGAAAATCTTGAGAAGTATGTCGTCAAGGAT aattgaacttggaattgtgacctccatgacacattatacttttttaacagGGCTCCCTTAAGGAGAAGACAGTTGAAAATCTTGAGAAATATGTTGTCAAGGATgtgagtggaaagccaatggggggttggcatatccctcctgtcgcttcttt #### Nt5c2_ID10046_7 --> 2 - 2 Original Alignment agACCTACCTGTTGGCCTGCCTCGTAGATTTTTTTACTAATTGTCCCAGATACACCag tgcatgtagtctgctggtgtttttgccaattttaaacttacttttctcagagACTCACCTGCTGGCTTGCCTTGTAGATTTTTTTACTAACTGTCCCAGATACACCaggtagagttatattgtaaatttctgtgtgaaattttatggagaaaacaaac Alignment from CESAR agACCTACCTGTTGGCCTGCCTCGTAGATTTTTTTACTAATTGTCCCAGATACACCag tgcatgtagtctgctggtgtttttgccaattttaaacttacttttctcagagACTCACCTGCTGGCTTGCCTTGTAGATTTTTTTACTAACTGTCCCAGATACACCaggtagagttatattgtaaatttctgtgtgaaattttatggagaaaacaaac Alignment from Spaln_aa2Genome AGACCTACCTGTTGGCCTGCCTCGTAGATTTTTTTACTAATTGTCCCAGATACACCAG tgcatgtagtctgctggtgtttttgccaattttaaacttacttttctcagAGACTCACCTGCTGGCTTGCCTTGTAGATTTTTTTACTAACTGTCCCAGATACACCAGgtagagttatattgtaaatttctgtgtgaaattttatggagaaaacaaac Alignment from Spaln_nt2Genome AGACCTACCTGTTGGCCTGCCTCGTAGATTTTTTTACTAATTGTCCCAGATACACCAG tgcatgtagtctgctggtgtttttgccaattttaaacttacttttctcagAGACTCACCTGCTGGCTTGCCTTGTAGATTTTTTTACTAACTGTCCCAGATACACCAGgtagagttatattgtaaatttctgtgtgaaattttatggagaaaacaaac Alignment from Pairagon AGACCTACCTGTTGGCCTGCCTCGTAGATTTTTTTACTAATTGTCCCAGATACACCAG tgcatgtagtctgctggtgtttttgccaattttaaacttacttttctcagAGACTCACCTGCTGGCTTGCCTTGTAGATTTTTTTACTAACTGTCCCAGATACACCAGgtagagttatattgtaaatttctgtgtgaaattttatggagaaaacaaac Alignment from Exonerate_protein2genome AGACCTACCTGTTGGCCTGCCTCGTAGATTTTTTTACTAATTGTCCCAGATACACCAG tgcatgtagtctgctggtgtttttgccaattttaaacttacttttctcagAGACTCACCTGCTGGCTTGCCTTGTAGATTTTTTTACTAACTGTCCCAGATACACCAGgtagagttatattgtaaatttctgtgtgaaattttatggagaaaacaaac Alignment from Exonerate_coding2genome AGACCTACCTGTTGGCCTGCCTCGTAGATTTTTTTACTAATTGTCCCAGATACACCAG tgcatgtagtctgctggtgtttttgccaattttaaacttacttttctcagAGACTCACCTGCTGGCTTGCCTTGTAGATTTTTTTACTAACTGTCCCAGATACACCAGgtagagttatattgtaaatttctgtgtgaaattttatggagaaaacaaac Alignment from GeneWise AGACCTACCTGTTGGCCTGCCTCGTAGATTTTTTTACTAATTGTCCCAGATACACCAG tgcatgtagtctgctggtgtttttgccaattttaaacttacttttctcagAGACTCACCTGCTGGCTTGCCTTGTAGATTTTTTTACTAACTGTCCCAGATACACCAGgtagagttatattgtaaatttctgtgtgaaattttatggagaaaacaaac #### Nudt22_ID1971_4 --> 1 - 0 Original Alignment gTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gattatgagaacgcaacactatcctagcggtcaaggtgcgcggtctgcaggTGCAGCTTGACTTCAGAGGAGGTCAGGAGCTATTACCTGAGTGGGGGACCTGAGGCCCACGAATCTACAGGAATCATCTTTGTGGAAACGCAGgtgagcgagcttagctctagttggcacctggattatttaaggctattaac Alignment from CESAR gTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gattatgagaacgcaacactatcctagcggtcaaggtgcgcggtctgcaggTGCAGCTTGACTTCAGAGGAGGTCAGGAGCTATTACCTGAGTGGGGGACCTGAGGCCCACGAATCTACAGGAATCATCTTTGTGGAAACGCAGgtgagcgagcttagctctagttggcacctggattatttaaggctattaac Alignment from Spaln_aa2Genome GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gattatgagaacgcaacactatcctagcggtcaaggtgcgcggtctgcagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGCTATTACCTGAGTGGGGGACCTGAGGCCCACGAATCTACAGGAATCATCTTTGTGGAAACGCAGgtgagcgagcttagctctagttggcacctggattatttaaggctattaac Alignment from Spaln_nt2Genome GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gattatgagaacgcaacactatcctagcggtcaaggtgcgcggtctgcagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGCTATTACCTGAGTGGGGGACCTGAGGCCCACGAATCTACAGGAATCATCTTTGTGGAAACGCAGgtgagcgagcttagctctagttggcacctggattatttaaggctattaac Alignment from Pairagon GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gattatgagaacgcaacactatcctagcggtcaaggtgcgcggtctgcagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGCTATTACCTGAGTGGGGGACCTGAGGCCCACGAATCTACAGGAATCATCTTTGTGGAAACGCAGgtgagcgagcttagctctagttggcacctggattatttaaggctattaac Alignment from Exonerate_protein2genome GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gattatgagaacgcaacactatcctagcggtcaaggtgcgcggtctgcagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGCTATTACCTGAGTGGGGGACCTGAGGCCCACGAATCTACAGGAATCATCTTTGTGGAAACGCAGgtgagcgagcttagctctagttggcacctggattatttaaggctattaac Alignment from Exonerate_coding2genome GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gattatgagaacgcaacactatcctagcggtcaaggtgcgcggtctgcagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGCTATTACCTGAGTGGGGGACCTGAGGCCCACGAATCTACAGGAATCATCTTTGTGGAAACGCAGgtgagcgagcttagctctagttggcacctggattatttaaggctattaac Alignment from GeneWise GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gattatgagaacgcaacactatcctagcggtcaaggtgcgcggtctgcagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGCTATTACCTGAGTGGGGGACCTGAGGCCCACGAATCTACAGGAATCATCTTTGTGGAAACGCAGgtgagcgagcttagctctagttggcacctggattatttaaggctattaac #### Nudt8_ID267_2 --> 1 - 0 Original Alignment tTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG ttgattggtttaggccatttaaacattaatgctgtcttgctgtgctgcagtTTTCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACACTGCACTGCAGGAGACACAAGAGGAGTTAGACTTG---GTACCCAAGGAGCAAGTCTGGGGGGTGCTGCAACCTGTGCATGATCAGgtgagtaagcttttcaatagaaaaactctatcattcagatgcctaacatt Alignment from CESAR tTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG ttgattggtttaggccatttaaacattaatgctgtcttgctgtgctgcagtTTTCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACACTGCACTGCAGGAGACACAAGAGGAGTTAGACTTG---GTACCCAAGGAGCAAGTCTGGGGGGTGCTGCAACCTGTGCATGATCAGgtgagtaagcttttcaatagaaaaactctatcattcagatgcctaacatt Alignment from Spaln_aa2Genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG ttgattggtttaggccatttaaacattaatgctgtcttgctgtgctgcagTTTTCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACACTGCACTGCAGGAGACACAAGAGGAGTTAGACTTGGTACCCAAGGAGCAAGTCTGGGGGGTGCTGCAACCTGTGCATGATCAGgtgagtaagcttttcaatagaaaaactctatcattcagatgcctaacatt Alignment from Spaln_nt2Genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGT---AATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG ttgattggtttaggccatttaaacattaatgctgtcttgctgtgctgcagTTTTCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACACTGCACTGCAGGAGACACAAGAGGAGTTAGACTT---GGTACCCAAGGAGCAAGTCTGGGGGGTGCTGCAACCTGTGCATGATCAGgtgagtaagcttttcaatagaaaaactctatcattcagatgcctaacatt Alignment from Pairagon TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGA---TGTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG ttgattggtttaggccatttaaacattaatgctgtcttgctgtgctgcagTTTTCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACACTGCACTGCAGGAGACACAAGAGGAGTTAGACTT---GGTACCCAAGGAGCAAGTCTGGGGGGTGCTGCAACCTGTGCATGATCAGgtgagtaagcttttcaatagaaaaactctatcattcagatgcctaacatt Alignment from Exonerate_protein2genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG ttgattggtttaggccatttaaacattaatgctgtcttgctgtgctgcagTTTTCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACACTGCACTGCAGGAGACACAAGAGGAGTTAGACTTG---GTACCCAAGGAGCAAGTCTGGGGGGTGCTGCAACCTGTGCATGATCAGgtgagtaagcttttcaatagaaaaactctatcattcagatgcctaacatt Alignment from Exonerate_coding2genome ttgattggtttaggccatttaaacattaatgctgtcttgctgtgctgcagttttccaggtggtaagtgtgaccctgatgaccgagatgttgtaatacacactgcactgcaggagacacaagaggagttagacttggtacccaaggagcaagtctggggggtgctgcaacctgtgcatgatcaggtgagtaagcttttcaatagaaaaactctatcattcagatgcctaacatt Alignment from GeneWise TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG ttgattggtttaggccatttaaacattaatgctgtcttgctgtgctgcagTTTTCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACACTGCACTGCAGGAGACACAAGAGGAGTTAGACTTG---GTACCCAAGGAGCAAGTCTGGGGGGTGCTGCAACCTGTGCATGATCAGgtgagtaagcttttcaatagaaaaactctatcattcagatgcctaacatt #### Nxf1_ID2342_2 --> 2 - 2 Original Alignment agCATGATGACCGTGTTAGTTTCCCTCAAAGAAGAAAGAAAGGCCGGGGGCCTTTCCGATGGAAGTGTGGTGAGGGGAATCGTAGGTCTGGAAGAGGTGGTTCTGGTGTACAGTCTTCCCGATTTGAGGAAGATGATGGCGATGTAGCAATGAATGATCCCCAGGATGGCCCCCGAGTAAGAta cccggctcttgcagagttcaagtgcgacaaacacagctgtttgctttcagagCATGATGATCGTGTTAGTTTTCCTCAAAGAAGAAAGAAAGGTCAGGGGTCTTTTCGGTGGAAATGTGGTGAGGGGAACCGTGGGTCTGGGAGAGGTGGTTCCGGTGTACAGTCCTCAAGATTTGAGGAAGAAGATGGTGACGTAGCAATGACTGACCCACAGGATGGACCCCAAGTCAGAtagtaagttgggttctattcatccaatcactttcaaatcctagattcagatg Alignment from CESAR agCATGATGACCGTGTTAGTTTCCCTCAAAGAAGAAAGAAAGGCCGGGGGCCTTTCCGATGGAAGTGTGGTGAGGGGAATCGTAGGTCTGGAAGAGGTGGTTCTGGTGTACAGTCTTCCCGATTTGAGGAAGATGATGGCGATGTAGCAATGAATGATCCCCAGGATGGCCCCCGAGTAAGAta cccggctcttgcagagttcaagtgcgacaaacacagctgtttgctttcagagCATGATGATCGTGTTAGTTTTCCTCAAAGAAGAAAGAAAGGTCAGGGGTCTTTTCGGTGGAAATGTGGTGAGGGGAACCGTGGGTCTGGGAGAGGTGGTTCCGGTGTACAGTCCTCAAGATTTGAGGAAGAAGATGGTGACGTAGCAATGACTGACCCACAGGATGGACCCCAAGTCAGAtagtaagttgggttctattcatccaatcactttcaaatcctagattcagatg Alignment from Spaln_aa2Genome AGCATGATGACCGTGTTAGTTTCCCTCAAAGAAGAAAGAAAGGCCGGGGGCCTTTCCGATGGAAGTGTGGTGAGGGGAATCGTAGGTCTGGAAGAGGTGGTTCTGGTGTACAGTCTTCCCGATTTGAGGAAGATGATGGCGATGTAGCAATGAATGATCCCCAGGATGGCCCCCGAGTAAGATA cccggctcttgcagagttcaagtgcgacaaacacagctgtttgctttcagAGCATGATGATCGTGTTAGTTTTCCTCAAAGAAGAAAGAAAGGTCAGGGGTCTTTTCGGTGGAAATGTGGTGAGGGGAACCGTGGGTCTGGGAGAGGTGGTTCCGGTGTACAGTCCTCAAGATTTGAGGAAGAAGATGGTGACGTAGCAATGACTGACCCACAGGATGGACCCCAAGTCAGATAgtaagttgggttctattcatccaatcactttcaaatcctagattcagatg Alignment from Spaln_nt2Genome AGCATGATGACCGTGTTAGTTTCCCTCAAAGAAGAAAGAAAGGCCGGGGGCCTTTCCGATGGAAGTGTGGTGAGGGGAATCGTAGGTCTGGAAGAGGTGGTTCTGGTGTACAGTCTTCCCGATTTGAGGAAGATGATGGCGATGTAGCAATGAATGATCCCCAGGATGGCCCCCGAGTAAGATA cccggctcttgcagagttcaagtgcgacaaacacagctgtttgctttcagAGCATGATGATCGTGTTAGTTTTCCTCAAAGAAGAAAGAAAGGTCAGGGGTCTTTTCGGTGGAAATGTGGTGAGGGGAACCGTGGGTCTGGGAGAGGTGGTTCCGGTGTACAGTCCTCAAGATTTGAGGAAGAAGATGGTGACGTAGCAATGACTGACCCACAGGATGGACCCCAAGTCAGATAgtaagttgggttctattcatccaatcactttcaaatcctagattcagatg Alignment from Pairagon AGCATGATGACCGTGTTAGTTTCCCTCAAAGAAGAAAGAAAGGCCGGGGGCCTTTCCGATGGAAGTGTGGTGAGGGGAATCGTAGGTCTGGAAGAGGTGGTTCTGGTGTACAGTCTTCCCGATTTGAGGAAGATGATGGCGATGTAGCAATGAATGATCCCCAGGATGGCCCCCGAGTAAGATA cccggctcttgcagagttcaagtgcgacaaacacagctgtttgctttcagAGCATGATGATCGTGTTAGTTTTCCTCAAAGAAGAAAGAAAGGTCAGGGGTCTTTTCGGTGGAAATGTGGTGAGGGGAACCGTGGGTCTGGGAGAGGTGGTTCCGGTGTACAGTCCTCAAGATTTGAGGAAGAAGATGGTGACGTAGCAATGACTGACCCACAGGATGGACCCCAAGTCAGATAgtaagttgggttctattcatccaatcactttcaaatcctagattcagatg Alignment from Exonerate_protein2genome AGCATGATGACCGTGTTAGTTTCCCTCAAAGAAGAAAGAAAGGCCGGGGGCCTTTCCGATGGAAGTGTGGTGAGGGGAATCGTAGGTCTGGAAGAGGTGGTTCTGGTGTACAGTCTTCCCGATTTGAGGAAGATGATGGCGATGTAGCAATGAATGATCCCCAGGATGGCCCCCGAGTAAGATA cccggctcttgcagagttcaagtgcgacaaacacagctgtttgctttcagAGCATGATGATCGTGTTAGTTTTCCTCAAAGAAGAAAGAAAGGTCAGGGGTCTTTTCGGTGGAAATGTGGTGAGGGGAACCGTGGGTCTGGGAGAGGTGGTTCCGGTGTACAGTCCTCAAGATTTGAGGAAGAAGATGGTGACGTAGCAATGACTGACCCACAGGATGGACCCCAAGTCAGATAgtaagttgggttctattcatccaatcactttcaaatcctagattcagatg Alignment from Exonerate_coding2genome AACGAGCATGATGACCGTGTTAGTTTCCCTCAAAGAAGAAAGAAAGGCCGGGGGCCTTTCCGATGGAAGTGTGGTGAGGGGAATCGTAGGTCTGGAAGAGGTGGTTCTGGTGTACAGTCTTCCCGATTTGAGGAAGATGATGGCGATGTAGCAATGAATGATCCCCAGGATGGCCCCCGAGTAAGATA cccggctcttgcagagttcaagtgcgacaaacacagctgtttgcttTCAGAGCATGATGATCGTGTTAGTTTTCCTCAAAGAAGAAAGAAAGGTCAGGGGTCTTTTCGGTGGAAATGTGGTGAGGGGAACCGTGGGTCTGGGAGAGGTGGTTCCGGTGTACAGTCCTCAAGATTTGAGGAAGAAGATGGTGACGTAGCAATGACTGACCCACAGGATGGACCCCAAGTCAGATAgtaagttgggttctattcatccaatcactttcaaatcctagattcagatg Alignment from GeneWise GCGGACGAAGGGAAGTCATACAACGAGCATGATGACCGTGTTAGTTTCCCTCAAAGAAGAAAGAAAGGCCGGGGGCCTTTCCGATGGAAGTGTGGTGAGGGGAATCGTAGGTCTGGAAGAGGTGGTTCTGGTGTACAGTCTTCCCGATTTGAGGAAGATGATGGCGATGTAGCAATGAATGATCCCCAGGATGGCCCCCGAGTAAGATA ggctcttgcagagttcaagtgcgac---AAACACAGCTGTTTGCTTTCAGAGCATGATGATCGTGTTAGTTTTCCTCAAAGAAGAAAGAAAGGTCAGGGGTCTTTTCGGTGGAAATGTGGTGAGGGGAACCGTGGGTCTGGGAGAGGTGGTTCCGGTGTACAGTCCTCAAGATTTGAGGAAGAAGATGGTGACGTAGCAATGACTGACCCACAGGATGGACCCCAAGTCAGATAgtaagttgggttctattcatccaatcactttcaaatcctagattcagatg #### Nxf1_ID2344_4 --> 0 - 0 Original Alignment ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG agcaaggaatctgaaaaaatagcatcccggttttactttttcttttgtagATACCCTATGGTAAAAAGCATGACAAAACTTGGCTTCTCAGCATGATTCAGAGTAAATGTAGTGTACCTTTCAACCCCATTGAGgtaagaacaatagagccagatttgagtagcttcgttcagtgaggagtatg Alignment from CESAR ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG agcaaggaatctgaaaaaatagcatcccggttttactttttcttttgtagATACCCTATGGTAAAAAGCATGACAAAACTTGGCTTCTCAGCATGATTCAGAGTAAATGTAGTGTACCTTTCAACCCCATTGAGgtaagaacaatagagccagatttgagtagcttcgttcagtgaggagtatg Alignment from Spaln_aa2Genome ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG agcaaggaatctgaaaaaatagcatcccggttttactttttcttttgtagATACCCTATGGTAAAAAGCATGACAAAACTTGGCTTCTCAGCATGATTCAGAGTAAATGTAGTGTACCTTTCAACCCCATTGAGgtaagaacaatagagccagatttgagtagcttcgttcagtgaggagtatg Alignment from Spaln_nt2Genome ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG agcaaggaatctgaaaaaatagcatcccggttttactttttcttttgtagATACCCTATGGTAAAAAGCATGACAAAACTTGGCTTCTCAGCATGATTCAGAGTAAATGTAGTGTACCTTTCAACCCCATTGAGgtaagaacaatagagccagatttgagtagcttcgttcagtgaggagtatg Alignment from Pairagon ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG agcaaggaatctgaaaaaatagcatcccggttttactttttcttttgtagATACCCTATGGTAAAAAGCATGACAAAACTTGGCTTCTCAGCATGATTCAGAGTAAATGTAGTGTACCTTTCAACCCCATTGAGgtaagaacaatagagccagatttgagtagcttcgttcagtgaggagtatg Alignment from Exonerate_protein2genome ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG agcaaggaatctgaaaaaatagcatcccggttttactttttcttttgtagATACCCTATGGTAAAAAGCATGACAAAACTTGGCTTCTCAGCATGATTCAGAGTAAATGTAGTGTACCTTTCAACCCCATTGAGgtaagaacaatagagccagatttgagtagcttcgttcagtgaggagtatg Alignment from Exonerate_coding2genome ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG agcaaggaatctgaaaaaatagcatcccggttttactttttcttttgtagATACCCTATGGTAAAAAGCATGACAAAACTTGGCTTCTCAGCATGATTCAGAGTAAATGTAGTGTACCTTTCAACCCCATTGAGgtaagaacaatagagccagatttgagtagcttcgttcagtgaggagtatg Alignment from GeneWise ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG agcaaggaatctgaaaaaatagcatcccggttttactttttcttttgtagATACCCTATGGTAAAAAGCATGACAAAACTTGGCTTCTCAGCATGATTCAGAGTAAATGTAGTGTACCTTTCAACCCCATTGAGgtaagaacaatagagccagatttgagtagcttcgttcagtgaggagtatg #### Nxf1_ID2345_5 --> 0 - 0 Original Alignment TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATC---CAGGATCGAGAAAACAGAAGG ttgagtagcttcgttcagtgaggagtatgtgttctttttccttcctctagTTTCACCATGAAAATACACGCAATCATTTCTTTGTAGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTGAACCATCAGATCATCCAGGATCGAGAGAACAGACGGgtagacgcagccaaaattaaagaatggactggtcgtatcaacttttctac Alignment from CESAR TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAG---ATCCAGGATCGAGAAAACAGAAGG ttgagtagcttcgttcagtgaggagtatgtgttctttttccttcctctagTTTCACCATGAAAATACACGCAATCATTTCTTTGTAGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTGAACCATCAGATCATCCAGGATCGAGAGAACAGACGGgtagacgcagccaaaattaaagaatggactggtcgtatcaacttttctac Alignment from Spaln_aa2Genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAG---ATCCAGGATCGAGAAAACAGAAGG ttgagtagcttcgttcagtgaggagtatgtgttctttttccttcctctagTTTCACCATGAAAATACACGCAATCATTTCTTTGTAGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTGAACCATCAGATCATCCAGGATCGAGAGAACAGACGGgtagacgcagccaaaattaaagaatggactggtcgtatcaacttttctac Alignment from Spaln_nt2Genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAG---ATCCAGGATCGAGAAAACAGAAGG ttgagtagcttcgttcagtgaggagtatgtgttctttttccttcctctagTTTCACCATGAAAATACACGCAATCATTTCTTTGTAGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTGAACCATCAGATCATCCAGGATCGAGAGAACAGACGGgtagacgcagccaaaattaaagaatggactggtcgtatcaacttttctac Alignment from Pairagon TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAG---ATCCAGGATCGAGAAAACAGAAGG ttgagtagcttcgttcagtgaggagtatgtgttctttttccttcctctagTTTCACCATGAAAATACACGCAATCATTTCTTTGTAGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTGAACCATCAGATCATCCAGGATCGAGAGAACAGACGGgtagacgcagccaaaattaaagaatggactggtcgtatcaacttttctac Alignment from Exonerate_protein2genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAG---ATCCAGGATCGAGAAAACAGAAGG ttgagtagcttcgttcagtgaggagtatgtgttctttttccttcctctagTTTCACCATGAAAATACACGCAATCATTTCTTTGTAGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTGAACCATCAGATCATCCAGGATCGAGAGAACAGACGGgtagacgcagccaaaattaaagaatggactggtcgtatcaacttttctac Alignment from Exonerate_coding2genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAG---ATCCAGGATCGAGAAAACAGAAGG ttgagtagcttcgttcagtgaggagtatgtgttctttttccttcctctagTTTCACCATGAAAATACACGCAATCATTTCTTTGTAGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTGAACCATCAGATCATCCAGGATCGAGAGAACAGACGGgtagacgcagccaaaattaaagaatggactggtcgtatcaacttttctac Alignment from GeneWise TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATC---CAGGATCGAGAAAACAGAAGG ttgagtagcttcgttcagtgaggagtatgtgttctttttccttcctctagTTTCACCATGAAAATACACGCAATCATTTCTTTGTAGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTGAACCATCAGATCATCCAGGATCGAGAGAACAGACGGgtagacgcagccaaaattaaagaatggactggtcgtatcaacttttctac #### Nxf1_ID2350_10 --> 0 - 2 Original Alignment TTGAAGACTGAGCGGGAATTAGACAAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCag cccctgtcatggttctgttttctcactgtctccctcgttttggctcgcagCTAAAGACTGAGCGGAAATTAGAAACAATAAAAGGGCTAAAGCTTGAAGAGCTATGGCTGGACAGAAACCCCATGTGTGAGAACTTTGGGGACCAGTCCAGCCATATCaggtaaaatacaaataggggtatcaggatgcagacaagatatgtttaacagg Alignment from CESAR TTGAAGACTGAGCGGGAATTAGACAAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCag cccctgtcatggttctgttttctcactgtctccctcgttttggctcgcagCTAAAGACTGAGCGGAAATTAGAAACAATAAAAGGGCTAAAGCTTGAAGAGCTATGGCTGGACAGAAACCCCATGTGTGAGAACTTTGGGGACCAGTCCAGCCATATCaggtaaaatacaaataggggtatcaggatgcagacaagatatgtttaacagg Alignment from Spaln_aa2Genome TTGAAGACTGAGCGGGAATTAGACAAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCAG cccctgtcatggttctgttttctcactgtctccctcgttttggctcgcagCTAAAGACTGAGCGGAAATTAGAAACAATAAAAGGGCTAAAGCTTGAAGAGCTATGGCTGGACAGAAACCCCATGTGTGAGAACTTTGGGGACCAGTCCAGCCATATCAGgtaaaatacaaataggggtatcaggatgcagacaagatatgtttaacagg Alignment from Spaln_nt2Genome TTGAAGACTGAGCGGGAATTAGACAAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCAG cccctgtcatggttctgttttctcactgtctccctcgttttggctcgcagCTAAAGACTGAGCGGAAATTAGAAACAATAAAAGGGCTAAAGCTTGAAGAGCTATGGCTGGACAGAAACCCCATGTGTGAGAACTTTGGGGACCAGTCCAGCCATATCAGgtaaaatacaaataggggtatcaggatgcagacaagatatgtttaacagg Alignment from Pairagon TTGAAGACTGAGCGGGAATTAGACAAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCAG cccctgtcatggttctgttttctcactgtctccctcgttttggctcgcagCTAAAGACTGAGCGGAAATTAGAAACAATAAAAGGGCTAAAGCTTGAAGAGCTATGGCTGGACAGAAACCCCATGTGTGAGAACTTTGGGGACCAGTCCAGCCATATCAGgtaaaatacaaataggggtatcaggatgcagacaagatatgtttaacagg Alignment from Exonerate_protein2genome TTGAAGACTGAGCGGGAATTAGACAAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCAG cccctgtcatggttctgttttctcactgtctccctcgttttggctcgcagCTAAAGACTGAGCGGAAATTAGAAACAATAAAAGGGCTAAAGCTTGAAGAGCTATGGCTGGACAGAAACCCCATGTGTGAGAACTTTGGGGACCAGTCCAGCCATATCAGgtaaaatacaaataggggtatcaggatgcagacaagatatgtttaacagg Alignment from Exonerate_coding2genome TTGAAGACTGAGCGGGAATTAGACAAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCAGC cccctgtcatggttctgttttctcactgtctccctcgttttggctcgcagCTAAAGACTGAGCGGAAATTAGAAACAATAAAAGGGCTAAAGCTTGAAGAGCTATGGCTGGACAGAAACCCCATGTGTGAGAACTTTGGGGACCAGTCCAGCCATATCAGGtaaaatacaaataggggtatcaggatgcagacaagatatgtttaacagg Alignment from GeneWise TTGAAGACTGAGCGGGAATTAGACAAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCAG cccctgtcatggttctgttttctcactgtctccctcgttttggctcgcagCTAAAGACTGAGCGGAAATTAGAAACAATAAAAGGGCTAAAGCTTGAAGAGCTATGGCTGGACAGAAACCCCATGTGTGAGAACTTTGGGGACCAGTCCAGCCATATCAGgtaaaatacaaataggggtatcaggatgcagacaagatatgtttaacagg #### Nxf1_ID2353_13 --> 0 - 2 Original Alignment GGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGca atgagaagagattgcagaacatatgacttattcatatgagtttctcgtagGGATGCTTCTTTGGGGCCAAGAATTTGAAAAGTCTGGTCATACACTTCTTGCAAcagtatgggccccacatgatagtcattgcggtaacaatgggtttatacatat Alignment from CESAR GGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGca atgagaagagattgcagaacatatgacttattcatatgagtttctcgtagGGATGCTTCTTTGGGGCCAAGAATTTGAAAAGTCTGGTCATACACTTCTTGCAAcagtatgggccccacatgatagtcattgcggtaacaatgggtttatacatat Alignment from Spaln_aa2Genome GGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA atgagaagagattgcagaacatatgacttattcatatgagtttctcgtagGGATGCTTCTTTGGGGCCAAGAATTTGAAAAGTCTGGTCATACACTTCTTGCAACAgtatgggccccacatgatagtcattgcggtaacaatgggtttatacatat Alignment from Spaln_nt2Genome GGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA atgagaagagattgcagaacatatgacttattcatatgagtttctcgtagGGATGCTTCTTTGGGGCCAAGAATTTGAAAAGTCTGGTCATACACTTCTTGCAACAgtatgggccccacatgatagtcattgcggtaacaatgggtttatacatat Alignment from Pairagon GGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA atgagaagagattgcagaacatatgacttattcatatgagtttctcgtagGGATGCTTCTTTGGGGCCAAGAATTTGAAAAGTCTGGTCATACACTTCTTGCAACAgtatgggccccacatgatagtcattgcggtaacaatgggtttatacatat Alignment from Exonerate_protein2genome GGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA atgagaagagattgcagaacatatgacttattcatatgagtttctcgtagGGATGCTTCTTTGGGGCCAAGAATTTGAAAAGTCTGGTCATACACTTCTTGCAACAgtatgggccccacatgatagtcattgcggtaacaatgggtttatacatat Alignment from Exonerate_coding2genome GGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCT atgagaagagattgcagaacatatgacttattcatatgagtttctcgtagggatgcttctttggggccaagaatttgaaaagtctggtcatacacttcttgcaacagtatgggccccacatGATAGTCATTGCGGTAACAATGGGTTTATACATAT Alignment from GeneWise GGAAGCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA atgagaagagattgcagaacatatgacttattcatatgagtttctcgtagGGATGCTTCTTTGGGGCCAAGAATTTGAAAAGTCTGGTCATACACTTCTTGCAACAgtatgggccccacatgatagtcattgcggtaacaatgggtttatacatat #### Nxf1_ID2359_19 --> 1 - 2 Original Alignment gCTATGTATTGTAAATGATGAATTATTTGTGCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACGCTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCTACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGaa caaaggaaatgttggaggtgaagagatacatctgccctttacttccacaggCTTTGCATTGTAAATGATGAGTTACTTGATCACAATGCTAGTCCTGACAAAATCCAAAGAGCCTTTGCCATGACTGCACCCACGCCATCCTCCGGTCCAGTACCAACACTGTCCACAGAACAACAGGAAATGGTGCAAACATTTTCAACCCAAACTGGTATGAACCTTGACTGGTCTCAAaagtaaaggagggttaaattttgatgtgcctaagtgaatcaccgtgcaatat Alignment from CESAR gCTATGTATTGTAAATGATGAATTATTTGTGCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACGCTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCTACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGaa caaaggaaatgttggaggtgaagagatacatctgccctttacttccacaggCTTTGCATTGTAAATGATGAGTTACTTGATCACAATGCTAGTCCTGACAAAATCCAAAGAGCCTTTGCCATGACTGCACCCACGCCATCCTCCGGTCCAGTACCAACACTGTCCACAGAACAACAGGAAATGGTGCAAACATTTTCAACCCAAACTGGTATGAACCTTGACTGGTCTCAAaagtaaaggagggttaaattttgatgtgcctaagtgaatcaccgtgcaatat Alignment from Spaln_aa2Genome GCTATGTATTGTAAATGATGAATTATTTGTGCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACGCTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCTACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGAA caaaggaaatgttggaggtgaagagatacatctgccctttacttccacagGCTTTGCATTGTAAATGATGAGTTACTTGATCACAATGCTAGTCCTGACAAAATCCAAAGAGCCTTTGCCATGACTGCACCCACGCCATCCTCCGGTCCAGTACCAACACTGTCCACAGAACAACAGGAAATGGTGCAAACATTTTCAACCCAAACTGGTATGAACCTTGACTGGTCTCAAAAgtaaaggagggttaaattttgatgtgcctaagtgaatcaccgtgcaatat Alignment from Spaln_nt2Genome GCTATGTATTGTAAATGATGAATTATTTGTGCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACGCTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCTACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGAA caaaggaaatgttggaggtgaagagatacatctgccctttacttccacagGCTTTGCATTGTAAATGATGAGTTACTTGATCACAATGCTAGTCCTGACAAAATCCAAAGAGCCTTTGCCATGACTGCACCCACGCCATCCTCCGGTCCAGTACCAACACTGTCCACAGAACAACAGGAAATGGTGCAAACATTTTCAACCCAAACTGGTATGAACCTTGACTGGTCTCAAAAgtaaaggagggttaaattttgatgtgcctaagtgaatcaccgtgcaatat Alignment from Pairagon GCTATGTATTGTAAATGATGAATTATTTGTGCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACGCTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCTACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGAA caaaggaaatgttggaggtgaagagatacatctgccctttacttccacagGCTTTGCATTGTAAATGATGAGTTACTTGATCACAATGCTAGTCCTGACAAAATCCAAAGAGCCTTTGCCATGACTGCACCCACGCCATCCTCCGGTCCAGTACCAACACTGTCCACAGAACAACAGGAAATGGTGCAAACATTTTCAACCCAAACTGGTATGAACCTTGACTGGTCTCAAAAgtaaaggagggttaaattttgatgtgcctaagtgaatcaccgtgcaatat Alignment from Exonerate_protein2genome GCTATGTATTGTAAATGATGAATTATTTGTGCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACGCTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCTACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGAA caaaggaaatgttggaggtgaagagatacatctgccctttacttccacagGCTTTGCATTGTAAATGATGAGTTACTTGATCACAATGCTAGTCCTGACAAAATCCAAAGAGCCTTTGCCATGACTGCACCCACGCCATCCTCCGGTCCAGTACCAACACTGTCCACAGAACAACAGGAAATGGTGCAAACATTTTCAACCCAAACTGGTATGAACCTTGACTGGTCTCAAAAgtaaaggagggttaaattttgatgtgcctaagtgaatcaccgtgcaatat Alignment from Exonerate_coding2genome GCTATGTATTGTAAATGATGAATTATTTGTGCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACGCTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCTACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGAA caaaggaaatgttggaggtgaagagatacatctgccctttacttccacagGCTTTGCATTGTAAATGATGAGTTACTTGATCACAATGCTAGTCCTGACAAAATCCAAAGAGCCTTTGCCATGACTGCACCCACGCCATCCTCCGGTCCAGTACCAACACTGTCCACAGAACAACAGGAAATGGTGCAAACATTTTCAACCCAAACTGGTATGAACCTTGACTGGTCTCAAAAgtaaaggagggttaaattttgatgtgcctaagtgaatcaccgtgcaatat Alignment from GeneWise GCTATGTATTGTAAATGATGAATTATTTGTGCGGAATGCCAGCCCTGAAGAAATCCAAAGAGCCTTCGCCATGTCTGCACCCACACCTTCCTCCAGTCCAGTACCCACGCTTTCCCCAGAACAGCAGGAAATGTTGCAAGCATTTTCTACCCAGTCTGGCATGAACCTTGAGTGGTCTCAGAAG caaaggaaatgttggaggtgaagagatacatctgccctttacttccacagGCTTTGCATTGTAAATGATGAGTTACTTGATCACAATGCTAGTCCTGACAAAATCCAAAGAGCCTTTGCCATGACTGCACCCACGCCATCCTCCGGTCCAGTACCAACACTGTCCACAGAACAACAGGAAATGGTGCAAACATTTTCAACCCAAACTGGTATGAACCTTGACTGGTCTCAAAAGtaaaggagggttaaattttgatgtgcctaagtgaatcaccgtgcaatat #### Obfc1_ID10235_2 --> 2 - 1 Original Alignment gtACATATTTTTACAACGGGCATCCAATAAGGCGGGTAGATATCATGGGAGCTGTCATCAGCGTGAAAGAAAGAGAGACTTTCTACAGCTACGGAg ttcttacaaggatggctcacagtatttgatttagacatctctctgttcaggaACATATTTTTACAATGGGCACCCAATTTGCTGGGTAGATATCATGAGTGCTGTGACCAGCGTGAAGGAATGGGAAACTTTCTATAGTTATGATggtatttatagtccttgttccaaatgagctcctgtgtatacctgccaagtg Alignment from CESAR gtACATATTTTTACAACGGGCATCCAATAAGGCGGGTAGATATCATGGGAGCTGTCATCAGCGTGAAAGAAAGAGAGACTTTCTACAGCTACGGAg ttcttacaaggatggctcacagtatttgatttagacatctctctgttcaggaACATATTTTTACAATGGGCACCCAATTTGCTGGGTAGATATCATGAGTGCTGTGACCAGCGTGAAGGAATGGGAAACTTTCTATAGTTATGATggtatttatagtccttgttccaaatgagctcctgtgtatacctgccaagtg Alignment from Spaln_aa2Genome GTACATATTTTTACAACGGGCATCCAATAAGGCGGGTAGATATCATGGGAGCTGTCATCAGCGTGAAAGAAAGAGAGACTTTCTACAGCTACGGAG ttcttacaaggatggctcacagtatttgatttagacatctctctgttcagGAACATATTTTTACAATGGGCACCCAATTTGCTGGGTAGATATCATGAGTGCTGTGACCAGCGTGAAGGAATGGGAAACTTTCTATAGTTATGATGgtatttatagtccttgttccaaatgagctcctgtgtatacctgccaagtg Alignment from Spaln_nt2Genome GTACATATTTTTACAACGGGCATCCAATAAGGCGGGTAGATATCATGGGAGCTGTCATCAGCGTGAAAGAAAGAGAGACTTTCTACAGCTACGGAG ttcttacaaggatggctcacagtatttgatttagacatctctctgttcagGAACATATTTTTACAATGGGCACCCAATTTGCTGGGTAGATATCATGAGTGCTGTGACCAGCGTGAAGGAATGGGAAACTTTCTATAGTTATGATGgtatttatagtccttgttccaaatgagctcctgtgtatacctgccaagtg Alignment from Pairagon GTACATATTTTTACAACGGGCATCCAATAAGGCGGGTAGATATCATGGGAGCTGTCATCAGCGTGAAAGAAAGAGAGACTTTCTACAGCTACGGAG ttcttacaaggatggctcacagtatttgatttagacatctctctgttcagGAACATATTTTTACAATGGGCACCCAATTTGCTGGGTAGATATCATGAGTGCTGTGACCAGCGTGAAGGAATGGGAAACTTTCTATAGTTATGATGgtatttatagtccttgttccaaatgagctcctgtgtatacctgccaagtg Alignment from Exonerate_protein2genome GTACATATTTTTACAACGGGCATCCAATAAGGCGGGTAGATATCATGGGAGCTGTCATCAGCGTGAAAGAAAGAGAGACTTTCTACAGCTACGGAG ttcttacaaggatggctcacagtatttgatttagacatctctctgttcagGAACATATTTTTACAATGGGCACCCAATTTGCTGGGTAGATATCATGAGTGCTGTGACCAGCGTGAAGGAATGGGAAACTTTCTATAGTTATGATGgtatttatagtccttgttccaaatgagctcctgtgtatacctgccaagtg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTACATATTTTTACAACGGGCATCCAATAAGGCGGGTAGATATCATGGGAGCTGTCATCAGCGTGAAAGAAAGAGAGACTTTCTACAGCTACGGAG ttcttacaaggatggctcacagtatttgatttagacatctctctgttcagGAACATATTTTTACAATGGGCACCCAATTTGCTGGGTAGATATCATGAGTGCTGTGACCAGCGTGAAGGAATGGGAAACTTTCTATAGTTATGATGgtatttatagtccttgttccaaatgagctcctgtgtatacctgccaagtg #### Oosp1_ID3265_2 --> 2 - 0 Original Alignment ccATTAGTCTGCAATGTGCCGACCACTGGTTCCATCTAAGGATCAGGCCTACGATATTTCACAACATTTTTATGGAACCCGATGAAGTGTTTTTAGGAATTGGCTGCCCTGTGACCACTACCTGGCCAAATGATACCTATGAATTTATCTACCGGACTTACTCCTGCGGCATTGCCAATAAA ccagtgtcatgtggtgatcccaaaatagcagtctctgtatcttttttcagccATTAGTCTACAATGTGCTGAACATTGGTTCTATCTAAGGATCAGGTCTACAACATTCCACAATGTTTACATGGAACCTGATGAAATTTTTTTAGGTGTTGGTTCTCTTGTGACTACAACATGGCCAAATGACACCTATGAATTCATCTATAGGACCTACTCTTGTGGCATTGCCAATAAAgtgagcaaggagcgctaactcaaaagccctctacaatttacatcactagt Alignment from CESAR ccATTAGTCTGCAATGTGCCGACCACTGGTTCCATCTAAGGATCAGGCCTACGATATTTCACAACATTTTTATGGAACCCGATGAAGTGTTTTTAGGAATTGGCTGCCCTGTGACCACTACCTGGCCAAATGATACCTATGAATTTATCTACCGGACTTACTCCTGCGGCATTGCCAATAAA ccagtgtcatgtggtgatcccaaaatagcagtctctgtatcttttttcagccATTAGTCTACAATGTGCTGAACATTGGTTCTATCTAAGGATCAGGTCTACAACATTCCACAATGTTTACATGGAACCTGATGAAATTTTTTTAGGTGTTGGTTCTCTTGTGACTACAACATGGCCAAATGACACCTATGAATTCATCTATAGGACCTACTCTTGTGGCATTGCCAATAAAgtgagcaaggagcgctaactcaaaagccctctacaatttacatcactagt Alignment from Spaln_aa2Genome CCATTAGTCTGCAATGTGCCGACCACTGGTTCCATCTAAGGATCAGGCCTACGATATTTCACAACATTTTTATGGAACCCGATGAAGTGTTTTTAGGAATTGGCTGCCCTGTGACCACTACCTGGCCAAATGATACCTATGAATTTATCTACCGGACTTACTCCTGCGGCATTGCCAATAAA ccagtgtcatgtggtgatcccaaaatagcagtctctgtatcttttttcagCCATTAGTCTACAATGTGCTGAACATTGGTTCTATCTAAGGATCAGGTCTACAACATTCCACAATGTTTACATGGAACCTGATGAAATTTTTTTAGGTGTTGGTTCTCTTGTGACTACAACATGGCCAAATGACACCTATGAATTCATCTATAGGACCTACTCTTGTGGCATTGCCAATAAAgtgagcaaggagcgctaactcaaaagccctctacaatttacatcactagt Alignment from Spaln_nt2Genome CCATTAGTCTGCAATGTGCCGACCACTGGTTCCATCTAAGGATCAGGCCTACGATATTTCACAACATTTTTATGGAACCCGATGAAGTGTTTTTAGGAATTGGCTGCCCTGTGACCACTACCTGGCCAAATGATACCTATGAATTTATCTACCGGACTTACTCCTGCGGCATTGCCAATAAA ccagtgtcatgtggtgatcccaaaatagcagtctctgtatcttttttcagCCATTAGTCTACAATGTGCTGAACATTGGTTCTATCTAAGGATCAGGTCTACAACATTCCACAATGTTTACATGGAACCTGATGAAATTTTTTTAGGTGTTGGTTCTCTTGTGACTACAACATGGCCAAATGACACCTATGAATTCATCTATAGGACCTACTCTTGTGGCATTGCCAATAAAgtgagcaaggagcgctaactcaaaagccctctacaatttacatcactagt Alignment from Pairagon CCATTAGTCTGCAATGTGCCGACCACTGGTTCCATCTAAGGATCAGGCCTACGATATTTCACAACATTTTTATGGAACCCGATGAAGTGTTTTTAGGAATTGGCTGCCCTGTGACCACTACCTGGCCAAATGATACCTATGAATTTATCTACCGGACTTACTCCTGCGGCATTGCCAATAAA ccagtgtcatgtggtgatcccaaaatagcagtctctgtatcttttttcagCCATTAGTCTACAATGTGCTGAACATTGGTTCTATCTAAGGATCAGGTCTACAACATTCCACAATGTTTACATGGAACCTGATGAAATTTTTTTAGGTGTTGGTTCTCTTGTGACTACAACATGGCCAAATGACACCTATGAATTCATCTATAGGACCTACTCTTGTGGCATTGCCAATAAAgtgagcaaggagcgctaactcaaaagccctctacaatttacatcactagt Alignment from Exonerate_protein2genome CCATTAGTCTGCAATGTGCCGACCACTGGTTCCATCTAAGGATCAGGCCTACGATATTTCACAACATTTTTATGGAACCCGATGAAGTGTTTTTAGGAATTGGCTGCCCTGTGACCACTACCTGGCCAAATGATACCTATGAATTTATCTACCGGACTTACTCCTGCGGCATTGCCAATAAA ccagtgtcatgtggtgatcccaaaatagcagtctctgtatcttttttcagCCATTAGTCTACAATGTGCTGAACATTGGTTCTATCTAAGGATCAGGTCTACAACATTCCACAATGTTTACATGGAACCTGATGAAATTTTTTTAGGTGTTGGTTCTCTTGTGACTACAACATGGCCAAATGACACCTATGAATTCATCTATAGGACCTACTCTTGTGGCATTGCCAATAAAgtgagcaaggagcgctaactcaaaagccctctacaatttacatcactagt Alignment from Exonerate_coding2genome CCATTAGTCTGCAATGTGCCGACCACTGGTTCCATCTAAGGATCAGGCCTACGATATTTCACAACATTTTTATGGAACCCGATGAAGTGTTTTTAGGAATTGGCTGCCCTGTGACCACTACCTGGCCAAATGATACCTATGAATTTATCTACCGGACTTACTCCTGCGGCATTGCCAATAAAGTTCTTTGTGATGTCACTCTGCTGAAGACGCAACTTACATACATCTCAAA ccagtgtcatgtggtgatcccaaaatagcagtctctgtatcttttttcagCCATTAGTCTACAATGTGCTGAACATTGGTTCTATCTAAGGATCAGGTCTACAACATTCCACAATGTTTACATGGAACCTGATGAAATTTTTTTAGGTGTTGGTTCTCTTGTGACTACAACATGGCCAAATGACACCTATGAATTCATCTATAGGACCTACTCTTGTGGCATTGCCAATAAAGTGAGCAAGGAG---CGCTAACTCAAAAGCCCTCTACAATTTACATCACT Alignment from GeneWise CCATTAGTCTGCAATGTGCCGACCACTGGTTCCATCTAAGGATCAGGCCTACGATATTTCACAACATTTTTATGGAACCCGATGAAGTGTTTTTAGGAATTGGCTGCCCTGTGACCACTACCTGGCCAAATGATACCTATGAATTTATCTACCGGACTTACTCCTGCGGCATTGCCAATAAA ccagtgtcatgtggtgatcccaaaatagcagtctctgtatcttttttcagCCATTAGTCTACAATGTGCTGAACATTGGTTCTATCTAAGGATCAGGTCTACAACATTCCACAATGTTTACATGGAACCTGATGAAATTTTTTTAGGTGTTGGTTCTCTTGTGACTACAACATGGCCAAATGACACCTATGAATTCATCTATAGGACCTACTCTTGTGGCATTGCCAATAAAgtgagcaaggagcgctaactcaaaagccctctacaatttacatcactagt #### Oosp2_ID3257_3 --> 0 - 2 Original Alignment GTTATCTCAAATGAAATCGTCTGTTTTGAAACCGAGATGTACTTTCGTCCAAGGAATTATTGTTTGGAACTTCAGATAGTCCCTTTGCAGTGTTCTGCCTCTcg gaggtgaattgggatattgcctatctcaacacaggcatctcgctctgcagGTTATCTCGAACGAAATTGTCTGTTTTGAGACAGAGATGTACTTTCGTCCAAGGAATTACTGTCTGGAACTTCAAATTGTTCCACTACAGTGCTCTGCGTTCcggtgagtttcaattaaccctcctccttgataagtcaagcaagagagaatga Alignment from CESAR GTTATCTCAAATGAAATCGTCTGTTTTGAAACCGAGATGTACTTTCGTCCAAGGAATTATTGTTTGGAACTTCAGATAGTCCCTTTGCAGTGTTCTGCCTCTcg gaggtgaattgggatattgcctatctcaacacaggcatctcgctctgcagGTTATCTCGAACGAAATTGTCTGTTTTGAGACAGAGATGTACTTTCGTCCAAGGAATTACTGTCTGGAACTTCAAATTGTTCCACTACAGTGCTCTGCGTTCcggtgagtttcaattaaccctcctccttgataagtcaagcaagagagaatga Alignment from Spaln_aa2Genome GTTATCTCAAATGAAATCGTCTGTTTTGAAACCGAGATGTACTTTCGTCCAAGGAATTATTGTTTGGAACTTCAGATAGTCCCTTTGCAGTGTTCTGCCTCTCG gaggtgaattgggatattgcctatctcaacacaggcatctcgctctgcagGTTATCTCGAACGAAATTGTCTGTTTTGAGACAGAGATGTACTTTCGTCCAAGGAATTACTGTCTGGAACTTCAAATTGTTCCACTACAGTGCTCTGCGTTCCGgtgagtttcaattaaccctcctccttgataagtcaagcaagagagaatga Alignment from Spaln_nt2Genome GTTATCTCAAATGAAATCGTCTGTTTTGAAACCGAGATGTACTTTCGTCCAAGGAATTATTGTTTGGAACTTCAGATAGTCCCTTTGCAGTGTTCTGCCTCTCG gaggtgaattgggatattgcctatctcaacacaggcatctcgctctgcagGTTATCTCGAACGAAATTGTCTGTTTTGAGACAGAGATGTACTTTCGTCCAAGGAATTACTGTCTGGAACTTCAAATTGTTCCACTACAGTGCTCTGCGTTCCGgtgagtttcaattaaccctcctccttgataagtcaagcaagagagaatga Alignment from Pairagon GTTATCTCAAATGAAATCGTCTGTTTTGAAACCGAGATGTACTTTCGTCCAAGGAATTATTGTTTGGAACTTCAGATAGTCCCTTTGCAGTGTTCTGCCTCTCG gaggtgaattgggatattgcctatctcaacacaggcatctcgctctgcagGTTATCTCGAACGAAATTGTCTGTTTTGAGACAGAGATGTACTTTCGTCCAAGGAATTACTGTCTGGAACTTCAAATTGTTCCACTACAGTGCTCTGCGTTCCGgtgagtttcaattaaccctcctccttgataagtcaagcaagagagaatga Alignment from Exonerate_protein2genome GTTATCTCAAATGAAATCGTCTGTTTTGAAACCGAGATGTACTTTCGTCCAAGGAATTATTGTTTGGAACTTCAGATAGTCCCTTTGCAGTGTTCTGCCTCTCG gaggtgaattgggatattgcctatctcaacacaggcatctcgctctgcagGTTATCTCGAACGAAATTGTCTGTTTTGAGACAGAGATGTACTTTCGTCCAAGGAATTACTGTCTGGAACTTCAAATTGTTCCACTACAGTGCTCTGCGTTCCGgtgagtttcaattaaccctcctccttgataagtcaagcaagagagaatga Alignment from Exonerate_coding2genome GTTATCTCAAATGAAATCGTCTGTTTTGAAACCGAGATGTACTTTCGTCCAAGGAATTATTGTTTGGAACTTCAGATAGTCCCTTTGCAGTGTTCTGCCTCTCG gaggtgaattgggatattgcctatctcaacacaggcatctcgctctgcagGTTATCTCGAACGAAATTGTCTGTTTTGAGACAGAGATGTACTTTCGTCCAAGGAATTACTGTCTGGAACTTCAAATTGTTCCACTACAGTGCTCTGCGTTCCGgtgagtttcaattaaccctcctccttgataagtcaagcaagagagaatga Alignment from GeneWise GTTATCTCAAATGAAATCGTCTGTTTTGAAACCGAGATGTACTTTCGTCCAAGGAATTATTGTTTGGAACTTCAGATAGTCCCTTTGCAGTGTTCTGCCTCTCG gaggtgaattgggatattgcctatctcaacacaggcatctcgctctgcagGTTATCTCGAACGAAATTGTCTGTTTTGAGACAGAGATGTACTTTCGTCCAAGGAATTACTGTCTGGAACTTCAAATTGTTCCACTACAGTGCTCTGCGTTCCGgtgagtttcaattaaccctcctccttgataagtcaagcaagagagaatga #### Opalin_ID8090_5 --> 0 - 0 Original Alignment GAGACTGAGATACCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAG atacatatgagtatcactcttttggatatgaaattcccttccctccgcagGAGACTGAGATACCATGTGAAATTTCAGAGCTCTTTGACAATCCA---ATATCTGAGgtaattgtatgtgacagcttgtaagtactgatatgcctgtgagacaaata Alignment from CESAR GAGACTGAGATACCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAG atacatatgagtatcactcttttggatatgaaattcccttccctccgcagGAGACTGAGATACCATGTGAAATTTCAGAGCTCTTTGACAATCCA---ATATCTGAGgtaattgtatgtgacagcttgtaagtactgatatgcctgtgagacaaata Alignment from Spaln_aa2Genome GAGACTGAGATACCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAG atacatatgagtatcactcttttggatatgaaattcccttccctccgcagGAGACTGAGATACCATGTGAAATTTCAGAGCTCTTTGACAATCCA---ATATCTGAGgtaattgtatgtgacagcttgtaagtactgatatgcctgtgagacaaata Alignment from Spaln_nt2Genome GAGACTGAGATACCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAG atacatatgagtatcactcttttggatatgaaattcccttccctccgcagGAGACTGAGATACCATGTGAAATTTCAGAGCTCTTTGACAATCC---AATATCTGAGgtaattgtatgtgacagcttgtaagtactgatatgcctgtgagacaaata Alignment from Pairagon GAGACTGAGATACCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAG atacatatgagtatcactcttttggatatgaaattcccttccctccgcagGAGACTGAGATACCATGTGAAATTTCAGAGCTCTTTGACAATCC---AATATCTGAGgtaattgtatgtgacagcttgtaagtactgatatgcctgtgagacaaata Alignment from Exonerate_protein2genome GAGACTGAGATACCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAG atacatatgagtatcactcttttggatatgaaattcccttccctccgcagGAGACTGAGATACCATGTGAAATTTCAGAGCTCTTTGACAATCCA---ATATCTGAGgtaattgtatgtgacagcttgtaagtactgatatgcctgtgagacaaata Alignment from Exonerate_coding2genome GAGACTGAGATACCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAG atacatatgagtatcactcttttggatatgaaattcccttccctccgcagGAGACTGAGATACCATGTGAAATTTCAGAGCTCTTTGACAATCCA---ATATCTGAGgtaattgtatgtgacagcttgtaagtactgatatgcctgtgagacaaata Alignment from GeneWise GAGACTGAGATACCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAG atacatatgagtatcactcttttggatatgaaattcccttccctccgcagGAGACTGAGATACCATGTGAAATTTCAGAGCTCTTTGACAATCCA---ATATCTGAGgtaattgtatgtgacagcttgtaagtactgatatgcctgtgagacaaata #### Osbp_ID3350_9 --> 0 - 1 Original Alignment GTGAGTCATCATCCCCCTGCTGCTGCGCACCATGCTGAATCCAAAAATGGCTGGACATTGCGTCAGGAAATTAAAATCACCAGCAAGTTTCGAGGCAAATACCTCTCCATTATGCCCCTTg cacatactcctactcattattctttgtttttttccaatgcaaccattcagGTCAGCCATCATACTCCTTTTGCAGCACACCACGCTGAATCCAAGAATGGCTGGACACTGCGTCAGGAAATTAAAATCACCAGCAAGTTTCGAGGCAAATACCTGTCCATTATGCCA---ggtgagtacaatcacctgcaagtttctagggaaacacctgtctaccatgcc Alignment from CESAR GTGAGTCATCATCCCCCTGCTGCTGCGCACCATGCTGAATCCAAAAATGGCTGGACATTGCGTCAGGAAATTAAAATCACCAGCAAGTTTCGAGGCAAATACCTCTCCATTATGCCCCTTg cacatactcctactcattattctttgtttttttccaatgcaaccattcagGTCAGCCATCATACTCCTTTTGCAGCACACCACGCTGAATCCAAGAATGGCTGGACACTGCGTCAGGAAATTAAAATCACCAGCAAGTTTCGAGGCAAATACCTGTCCATTATGCCA---ggtgagtacaatcacctgcaagtttctagggaaacacctgtctaccatgcc Alignment from Spaln_aa2Genome GTGAGTCATCATCCCCCTGCTGCTGCGCACCATGCTGAATCCAAAAATGGCTGGACATTGCGTCAGGAAATTAAAATCACCAGCAAGTTTCGAGGCAAATACCTCTCCATTATGCCC- cacatactcctactcattattctttgtttttttccaatgcaaccattcagGTCAGCCATCATACTCCTTTTGCAGCACACCACGCTGAATCCAAGAATGGCTGGACACTGCGTCAGGAAATTAAAATCACCAGCAAGTTTCGAGGCAAATACCTGTCCATTATGCCAGgtgagtacaatcacctgcaagtttctagggaaacacctgtctaccatgcc Alignment from Spaln_nt2Genome GTGAGTCATCATCCCCCTGCTGCTGCGCACCATGCTGAATCCAAAAATGGCTGGACATTGCGTCAGGAAATTAAAATCACCAGCAAGTTTCGAGGCAAATACCTCTCCATTATGCCCC cacatactcctactcattattctttgtttttttccaatgcaaccattcagGTCAGCCATCATACTCCTTTTGCAGCACACCACGCTGAATCCAAGAATGGCTGGACACTGCGTCAGGAAATTAAAATCACCAGCAAGTTTCGAGGCAAATACCTGTCCATTATGCCAGgtgagtacaatcacctgcaagtttctagggaaacacctgtctaccatgcc Alignment from Pairagon GTGAGTCATCATCCCCCTGCTGCTGCGCACCATGCTGAATCCAAAAATGGCTGGACATTGCGTCAGGAAATTAAAATCACCAGCAAGTTTCGAGGCAAATACCTCTCCATTATGCCCCTTG cacatactcctactcattattctttgtttttttccaatgcaaccattcagGTCAGCCATCATACTCCTTTTGCAGCACACCACGCTGAATCCAAGAATGGCTGGACACTGCGTCAGGAAATTAAAATCACCAGCAAGTTTCGAGGCAAATACCTGTCCATTATGCCA---Ggtgagtacaatcacctgcaagtttctagggaaacacctgtctaccatgcc Alignment from Exonerate_protein2genome GTGAGTCATCATCCCCCTGCTGCTGCGCACCATGCTGAATCCAAAAATGGCTGGACATTGCGTCAGGAAATTAAAATCACCAGCAAGTTTCGAGGCAAATACCTCTCCATTATGCCCCTTG cacatactcctactcattattctttgtttttttccaatgcaaccattcagGTCAGCCATCATACTCCTTTTGCAGCACACCACGCTGAATCCAAGAATGGCTGGACACTGCGTCAGGAAATTAAAATCACCAGCAAGTTTCGAGGCAAATACCTGTCCATTATGCCA---Ggtgagtacaatcacctgcaagtttctagggaaacacctgtctaccatgcc Alignment from Exonerate_coding2genome GTGAGTCATCATCCCCCTGCTGCTGCGCACCATGCTGAATCCAAAAATGGCTGGACATTGCGTCAGGAAATTAAAATCACCAGCAAGTTTCGAGGCAAATACCTCTCCATTATGCCCCTTG cacatactcctactcattattctttgtttttttccaatgcaaccattcagGTCAGCCATCATACTCCTTTTGCAGCACACCACGCTGAATCCAAGAATGGCTGGACACTGCGTCAGGAAATTAAAATCACCAGCAAGTTTCGAGGCAAATACCTGTCCATTATGCCA---Ggtgagtacaatcacctgcaagtttctagggaaacacctgtctaccatgcc Alignment from GeneWise GTGAGTCATCATCCCCCTGCTGCTGCGCACCATGCTGAATCCAAAAATGGCTGGACATTGCGTCAGGAAATTAAAATCACCAGCAAGTTTCGAGGCAAATACCTCTCCATTATGCCCC cacatactcctactcattattctttgtttttttccaatgcaaccattcagGTCAGCCATCATACTCCTTTTGCAGCACACCACGCTGAATCCAAGAATGGCTGGACACTGCGTCAGGAAATTAAAATCACCAGCAAGTTTCGAGGCAAATACCTGTCCATTATGCCAGgtgagtacaatcacctgcaagtttctagggaaacacctgtctaccatgcc #### Ostf1_ID4423_7 --> 2 - 0 Original Alignment acATAGTGGAGGTTCTGTTTACTCAGCCGAATGTGGAGCTGAAC---CAGCAG taagcagctgcatcagacacaagctgctaacctcttcttcctaccgccagatATAGTGGAGGTGCTGTTTACTCAACCAAATGTGGAATTAATCCAGCAGCAAgtgggctggaacatcccttcatcatgctaattgctatagtttcaccgtgt Alignment from CESAR acATAGTGGAGGTTCTGTTTACTCAGCCGAATGTGGAGCTG---AACCAGCAG taagcagctgcatcagacacaagctgctaacctcttcttcctaccgccagatATAGTGGAGGTGCTGTTTACTCAACCAAATGTGGAATTAATCCAGCAGCAAgtgggctggaacatcccttcatcatgctaattgctatagtttcaccgtgt Alignment from Spaln_aa2Genome ACATAGTGGAGGTTCTGTTTACTCAGCCGAATGTGGAGCTG---AACCAGCAG taagcagctgcatcagacacaagctgctaacctcttcttcctaccgccagATATAGTGGAGGTGCTGTTTACTCAACCAAATGTGGAATTAATCCAGCAGCAAgtgggctggaacatcccttcatcatgctaattgctatagtttcaccgtgt Alignment from Spaln_nt2Genome ACATAGTGGAGGTTCTGTTTACTCAGCCGAATGTGGAGCTGAACCAGCA taagcagctgcatcagacacaagctgctaacctcttcttcctaccgccagATATAGTGGAGGTGCTGTTTACTCAACCAAATGTGGAATTAATCCAGCAgcaagtgggctggaacatcccttcatcatgctaattgctatagtttcaccgtgt Alignment from Pairagon ACATAGTGGAGGTTCTGTTTACTCAGCCGAATGTGGAGCTGAACCAGCAG--- taagcagctgcatcagacacaagctgctaacctcttcttcctaccgccagATATAGTGGAGGTGCTGTTTACTCAACCAAATGTGGAATTAATCCAGCAGCAAgtgggctggaacatcccttcatcatgctaattgctatagtttcaccgtgt Alignment from Exonerate_protein2genome ACATAGTGGAGGTTCTGTTTACTCAGCCGAATGTGGAGCTG---AACCAGCAG taagcagctgcatcagacacaagctgctaacctcttcttcctaccgccagATATAGTGGAGGTGCTGTTTACTCAACCAAATGTGGAATTAATCCAGCAGCAAgtgggctggaacatcccttcatcatgctaattgctatagtttcaccgtgt Alignment from Exonerate_coding2genome taagcagctgcatcagacacaagctgctaacctcttcttcctaccgccagatatagtggaggtgctgtttactcaaccaaatgtggaattaatccagcagcaagtgggctggaacatcccttcatcatgctaattgctatagtttcaccgtgt Alignment from GeneWise ACATAGTGGAGGTTCTGTTTACTCAGCCGAATGTGGAGCTGAACCAGCAGAAT taagcagctgcatcagacacaagctgctaacctcttcttcctaccgccagATATAGTGGAGGTGCTGTTTACTCAACCAAATGTGGAATTAATCCAGCAGCAAgtgggctggaacatcccttcatcatgctaattgctatagtttcaccgtgt #### Ostf1_ID4427_3 --> 0 - 0 Original Alignment CCAGATGAATTATACTTTGAAGAAGGAGACATTATCTACATCACTGACATG gtaaactgcgtggtattcatttgtgccaaatcctccctttcttcccacagCCAGATGAATTATACTTCGAGGAAGGAGACATAATCTACATCACTGACATGgtgagagtgttgtgcagactaatactaactgcattctataaattaaattt Alignment from CESAR CCAGATGAATTATACTTTGAAGAAGGAGACATTATCTACATCACTGACATG gtaaactgcgtggtattcatttgtgccaaatcctccctttcttcccacagCCAGATGAATTATACTTCGAGGAAGGAGACATAATCTACATCACTGACATGgtgagagtgttgtgcagactaatactaactgcattctataaattaaattt Alignment from Spaln_aa2Genome CCAGATGAATTATACTTTGAAGAAGGAGACATTATCTACATCACTGACATG gtaaactgcgtggtattcatttgtgccaaatcctccctttcttcccacagCCAGATGAATTATACTTCGAGGAAGGAGACATAATCTACATCACTGACATGgtgagagtgttgtgcagactaatactaactgcattctataaattaaattt Alignment from Spaln_nt2Genome CCAGATGAATTATACTTTGAAGAAGGAGACATTATCTACATCACTGACATG gtaaactgcgtggtattcatttgtgccaaatcctccctttcttcccacagCCAGATGAATTATACTTCGAGGAAGGAGACATAATCTACATCACTGACATGgtgagagtgttgtgcagactaatactaactgcattctataaattaaattt Alignment from Pairagon CCAGATGAATTATACTTTGAAGAAGGAGACATTATCTACATCACTGACATG gtaaactgcgtggtattcatttgtgccaaatcctccctttcttcccacagCCAGATGAATTATACTTCGAGGAAGGAGACATAATCTACATCACTGACATGgtgagagtgttgtgcagactaatactaactgcattctataaattaaattt Alignment from Exonerate_protein2genome CCAGATGAATTATACTTTGAAGAAGGAGACATTATCTACATCACTGACATG gtaaactgcgtggtattcatttgtgccaaatcctccctttcttcccacagCCAGATGAATTATACTTCGAGGAAGGAGACATAATCTACATCACTGACATGgtgagagtgttgtgcagactaatactaactgcattctataaattaaattt Alignment from Exonerate_coding2genome CCAGATGAATTATACTTTGAAGAAGGAGACATTATCTACATCACTGACATG gtaaactgcgtggtattcatttgtgccaaatcctccctttcttcccacagCCAGATGAATTATACTTCGAGGAAGGAGACATAATCTACATCACTGACATGgtgagagtgttgtgcagactaatactaactgcattctataaattaaattt Alignment from GeneWise CCAGATGAATTATACTTTGAAGAAGGAGACATTATCTACATCACTGACATG gtaaactgcgtggtattcatttgtgccaaatcctccctttcttcccacagCCAGATGAATTATACTTCGAGGAAGGAGACATAATCTACATCACTGACATGgtgagagtgttgtgcagactaatactaactgcattctataaattaaattt #### Otub1_ID2060_6 --> 0 - 0 Original Alignment TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG gaccatctccatactttgtcataccatgcaaggctgacttaccttctcagTTCATGGACTTTATTGAGCGTGTGGAGAAGAAGACCTCTGTCACTGACCTGCTAGCTTCCTTCAATGACCAAAGTACATCAGACTACCTGGTGGTCTACCTGCAGCTGTTAACCTCAGGCTATGTACAACGAAAAAGCAAGTTCTTTGAACACTACATTGAGGGTGGTCAA---------------AGTCAGGAGgtatttcctcccccagcacctgtactgaggccccccttttttttcttggt Alignment from CESAR TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG gaccatctccatactttgtcataccatgcaaggctgacttaccttctcagTTCATGGACTTTATTGAGCGTGTGGAGAAGAAGACCTCTGTCACTGACCTGCTAGCTTCCTTCAATGACCAAAGTACATCAGACTACCTGGTGGTCTACCTGCAGCTGTTAACCTCAGGCTATGTACAACGAAAAAGCAAGTTCTTTGAACACTACATTGAGGGTGGTCAAAGT---------------CAGGAGgtatttcctcccccagcacctgtactgaggccccccttttttttcttggt Alignment from Spaln_aa2Genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG gaccatctccatactttgtcataccatgcaaggctgacttaccttctcagTTCATGGACTTTATTGAGCGTGTGGAGAAGAAGACCTCTGTCACTGACCTGCTAGCTTCCTTCAATGACCAAAGTACATCAGACTACCTGGTGGTCTACCTGCAGCTGTTAACCTCAGGCTATGTACAACGAAAAAGCAAGTTCTTTGAACACTACATTGAGGGTGGTCAAAGTCAGGAGGTATTTCCTCCCCCAgcacctgtactgaggccccccttttttttcttggt Alignment from Spaln_nt2Genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAG gaccatctccatactttgtcataccatgcaaggctgacttaccttctcagTTCATGGACTTTATTGAGCGTGTGGAGAAGAAGACCTCTGTCACTGACCTGCTAGCTTCCTTCAATGACCAAAGTACATCAGACTACCTGGTGGTCTACCTGCAGCTGTTAACCTCAGGCTATGTACAACGAAAAAGCAAGTTCTTTGAACACTACATTGAGGGTGGTCAAA---GTCAGGAGgtatttcctcccccagcacctgtactgaggccccccttttttttcttggt Alignment from Pairagon TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTG gaccatctccatactttgtcataccatgcaaggctgacttaccttctcagTTCATGGACTTTATTGAGCGTGTGGAGAAGAAGACCTCTGTCACTGACCTGCTAGCTTCCTTCAATGACCAAAGTACATCAGACTACCTGGTGGTCTACCTGCAGCTGTTAACCTCAGGCTATGTACAACGAAAAAGCAAGTTCTTTGAACACTACATTGAGGGTGgtcaaagtcaggaggtatttcctcccccagcacctgtactgaggccccccttttttttcttggt Alignment from Exonerate_protein2genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG gaccatctccatactttgtcataccatgcaaggctgacttaccttctcagTTCATGGACTTTATTGAGCGTGTGGAGAAGAAGACCTCTGTCACTGACCTGCTAGCTTCCTTCAATGACCAAAGTACATCAGACTACCTGGTGGTCTACCTGCAGCTGTTAACCTCAGGCTATGTACAACGAAAAAGCAAGTTCTTTGAACACTACATTGAGGGTGGTCAAAGTCAGGAGGTATTTCCTCCCCCAgcacctgtactgaggccccccttttttttcttggt Alignment from Exonerate_coding2genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG gaccatctccatactttgtcataccatgcaaggctgacttaccttctcagTTCATGGACTTTATTGAGCGTGTGGAGAAGAAGACCTCTGTCACTGACCTGCTAGCTTCCTTCAATGACCAAAGTACATCAGACTACCTGGTGGTCTACCTGCAGCTGTTAACCTCAGGCTATGTACAACGAAAAAGCAAGTTCTTTGAACACTACATTGAGGGTGGTCAAAGTCAGGAGGTATTTCCTCCCCCAgcacctgtactgaggccccccttttttttcttggt Alignment from GeneWise TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG gaccatctccatactttgtcataccatgcaaggctgacttaccttctcagTTCATGGACTTTATTGAGCGTGTGGAGAAGAAGACCTCTGTCACTGACCTGCTAGCTTCCTTCAATGACCAAAGTACATCAGACTACCTGGTGGTCTACCTGCAGCTGTTAACCTCAGGCTATGTACAACGAAAAAGCAAGTTCTTTGAACACTACATTGAGGGTGGTCAAAGT---------------CAGGAGgtatttcctcccccagcacctgtactgaggccccccttttttttcttggt #### Pacs1_ID875_19 --> 1 - 0 Original Alignment cCCTGATGAGGACTCCTACCAGAAGTTCATCCCCTTCATTGGC atgctgagagactttgtcaccaccgggctgttttattactctgttttcagcCCTGATGAGGACTCTTACCAGAAGTTCATCCCCTTCATTGGTgtaggaaatggcctacaggtgtgtcctattgtagtacattggaattcgag Alignment from CESAR cCCTGATGAGGACTCCTACCAGAAGTTCATCCCCTTCATTGGC atgctgagagactttgtcaccaccgggctgttttattactctgttttcagcCCTGATGAGGACTCTTACCAGAAGTTCATCCCCTTCATTGGTgtaggaaatggcctacaggtgtgtcctattgtagtacattggaattcgag Alignment from Spaln_aa2Genome CCCTGATGAGGACTCCTACCAGAAGTTCATCCCCTTCATTGGC atgctgagagactttgtcaccaccgggctgttttattactctgttttcagCCCTGATGAGGACTCTTACCAGAAGTTCATCCCCTTCATTGGTgtaggaaatggcctacaggtgtgtcctattgtagtacattggaattcgag Alignment from Spaln_nt2Genome CCCTGATGAGGACTCCTACCAGAAGTTCATCCCCTTCATTGGC atgctgagagactttgtcaccaccgggctgttttattactctgttttcagCCCTGATGAGGACTCTTACCAGAAGTTCATCCCCTTCATTGGTgtaggaaatggcctacaggtgtgtcctattgtagtacattggaattcgag Alignment from Pairagon CCCTGATGAGGACTCCTACCAGAAGTTCATCCCCTTCATTGGC atgctgagagactttgtcaccaccgggctgttttattactctgttttcagCCCTGATGAGGACTCTTACCAGAAGTTCATCCCCTTCATTGGTgtaggaaatggcctacaggtgtgtcctattgtagtacattggaattcgag Alignment from Exonerate_protein2genome CCCTGATGAGGACTCCTACCAGAAGTTCATCCCCTTCATTGGC atgctgagagactttgtcaccaccgggctgttttattactctgttttcagCCCTGATGAGGACTCTTACCAGAAGTTCATCCCCTTCATTGGTgtaggaaatggcctacaggtgtgtcctattgtagtacattggaattcgag Alignment from Exonerate_coding2genome atgctgagagactttgtcaccaccgggctgttttattactctgttttcagccctgatgaggactcttaccagaagttcatccccttcattggtgtaggaaatggcctacaggtgtgtcctattgtagtacattggaattcgag Alignment from GeneWise CCCTGATGAGGACTCCTACCAGAAGTTCATCCCCTTCATTGGC atgctgagagactttgtcaccaccgggctgttttattactctgttttcagCCCTGATGAGGACTCTTACCAGAAGTTCATCCCCTTCATTGGTgtaggaaatggcctacaggtgtgtcctattgtagtacattggaattcgag #### Pacs1_ID878_16 --> 1 - 1 Original Alignment cTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAg tctctcacctaaaacatcaccctgccccacctccttttctcttttcccagtTGCAATTGCAACTCATCGATGCCAAGGCCGGTTAAAGTAGCAGCCGTGGGTAGCCAGAGTTACCTTAGTTCCATCCTTCGTTTTTTTGTCAAGTCCCTTGCTAGCAAGACACCAGACTGGCTTGGTTATATGCATTTCCTCATTATTCTCTTAggtaagtttacaccatgctgactgtatgtttggaatgagtacattgtcctt Alignment from CESAR cTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAg tctctcacctaaaacatcaccctgccccacctccttttctcttttcccagtTGCAATTGCAACTCATCGATGCCAAGGCCGGTTAAAGTAGCAGCCGTGGGTAGCCAGAGTTACCTTAGTTCCATCCTTCGTTTTTTTGTCAAGTCCCTTGCTAGCAAGACACCAGACTGGCTTGGTTATATGCATTTCCTCATTATTCTCTTAggtaagtttacaccatgctgactgtatgtttggaatgagtacattgtcctt Alignment from Spaln_aa2Genome CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG tctctcacctaaaacatcaccctgccccacctccttttctcttttcccagTTGCAATTGCAACTCATCGATGCCAAGGCCGGTTAAAGTAGCAGCCGTGGGTAGCCAGAGTTACCTTAGTTCCATCCTTCGTTTTTTTGTCAAGTCCCTTGCTAGCAAGACACCAGACTGGCTTGGTTATATGCATTTCCTCATTATTCTCTTAGgtaagtttacaccatgctgactgtatgtttggaatgagtacattgtcctt Alignment from Spaln_nt2Genome CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG tctctcacctaaaacatcaccctgccccacctccttttctcttttcccagTTGCAATTGCAACTCATCGATGCCAAGGCCGGTTAAAGTAGCAGCCGTGGGTAGCCAGAGTTACCTTAGTTCCATCCTTCGTTTTTTTGTCAAGTCCCTTGCTAGCAAGACACCAGACTGGCTTGGTTATATGCATTTCCTCATTATTCTCTTAGgtaagtttacaccatgctgactgtatgtttggaatgagtacattgtcctt Alignment from Pairagon CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG tctctcacctaaaacatcaccctgccccacctccttttctcttttcccagTTGCAATTGCAACTCATCGATGCCAAGGCCGGTTAAAGTAGCAGCCGTGGGTAGCCAGAGTTACCTTAGTTCCATCCTTCGTTTTTTTGTCAAGTCCCTTGCTAGCAAGACACCAGACTGGCTTGGTTATATGCATTTCCTCATTATTCTCTTAGgtaagtttacaccatgctgactgtatgtttggaatgagtacattgtcctt Alignment from Exonerate_protein2genome CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG tctctcacctaaaacatcaccctgccccacctccttttctcttttcccagTTGCAATTGCAACTCATCGATGCCAAGGCCGGTTAAAGTAGCAGCCGTGGGTAGCCAGAGTTACCTTAGTTCCATCCTTCGTTTTTTTGTCAAGTCCCTTGCTAGCAAGACACCAGACTGGCTTGGTTATATGCATTTCCTCATTATTCTCTTAGgtaagtttacaccatgctgactgtatgtttggaatgagtacattgtcctt Alignment from Exonerate_coding2genome CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAGGT tctctcacctaaaacatcaccctgccccacctccttttctcttttcccagTTGCAATTGCAACTCATCGATGCCAAGGCCGGTTAAAGTAGCAGCCGTGGGTAGCCAGAGTTACCTTAGTTCCATCCTTCGTTTTTTTGTCAAGTCCCTTGCTAGCAAGACACCAGACTGGCTTGGTTATATGCATTTCCTCATTATTCTCTTAGGTaagtttacaccatgctgactgtatgtttggaatgagtacattgtcctt Alignment from GeneWise -TGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG tctctcacctaaaacatcaccctgccccacctccttttctcttttcccagTTGCAATTGCAACTCATCGATGCCAAGGCCGGTTAAAGTAGCAGCCGTGGGTAGCCAGAGTTACCTTAGTTCCATCCTTCGTTTTTTTGTCAAGTCCCTTGCTAGCAAGACACCAGACTGGCTTGGTTATATGCATTTCCTCATTATTCTCTTAGgtaagtttacaccatgctgactgtatgtttggaatgagtacattgtcctt #### Pacs1_ID881_13 --> 1 - 0 Original Alignment cAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGATCTCCTGATCTGGGCCACAGCACACAG tttgtagttggcttctgtctgcttcccttatctctccttctccctcccagtAAGGTGGAAGGGACACACACACCTCCACAGAAAAGAAGCACACCCCTTAAGGAGCGACAACTTCTAAAACCCCTGAGTGAGCGAACTAATAGTGCTGACAGTGAGAAGTCACCTGATCTGGGCCACAGCATACAGgtgggggtgtctcatctgtatggtaaggaccagggaggaggggttgatgc Alignment from CESAR cAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGATCTCCTGATCTGGGCCACAGCACACAG tttgtagttggcttctgtctgcttcccttatctctccttctccctcccagtAAGGTGGAAGGGACACACACACCTCCACAGAAAAGAAGCACACCCCTTAAGGAGCGACAACTTCTAAAACCCCTGAGTGAGCGAACTAATAGTGCTGACAGTGAGAAGTCACCTGATCTGGGCCACAGCATACAGgtgggggtgtctcatctgtatggtaaggaccagggaggaggggttgatgc Alignment from Spaln_aa2Genome CAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGATCTCCTGATCTGGGCCACAGCACACAG tttgtagttggcttctgtctgcttcccttatctctccttctccctcccagTAAGGTGGAAGGGACACACACACCTCCACAGAAAAGAAGCACACCCCTTAAGGAGCGACAACTTCTAAAACCCCTGAGTGAGCGAACTAATAGTGCTGACAGTGAGAAGTCACCTGATCTGGGCCACAGCATACAGgtgggggtgtctcatctgtatggtaaggaccagggaggaggggttgatgc Alignment from Spaln_nt2Genome CAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGATCTCCTGATCTGGGCCACAGCACACAG tttgtagttggcttctgtctgcttcccttatctctccttctccctcccagTAAGGTGGAAGGGACACACACACCTCCACAGAAAAGAAGCACACCCCTTAAGGAGCGACAACTTCTAAAACCCCTGAGTGAGCGAACTAATAGTGCTGACAGTGAGAAGTCACCTGATCTGGGCCACAGCATACAGgtgggggtgtctcatctgtatggtaaggaccagggaggaggggttgatgc Alignment from Pairagon CAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGATCTCCTGATCTGGGCCACAGCACACAG tttgtagttggcttctgtctgcttcccttatctctccttctccctcccagTAAGGTGGAAGGGACACACACACCTCCACAGAAAAGAAGCACACCCCTTAAGGAGCGACAACTTCTAAAACCCCTGAGTGAGCGAACTAATAGTGCTGACAGTGAGAAGTCACCTGATCTGGGCCACAGCATACAGgtgggggtgtctcatctgtatggtaaggaccagggaggaggggttgatgc Alignment from Exonerate_protein2genome CAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGATCTCCTGATCTGGGCCACAGCACACAG tttgtagttggcttctgtctgcttcccttatctctccttctccctcccagTAAGGTGGAAGGGACACACACACCTCCACAGAAAAGAAGCACACCCCTTAAGGAGCGACAACTTCTAAAACCCCTGAGTGAGCGAACTAATAGTGCTGACAGTGAGAAGTCACCTGATCTGGGCCACAGCATACAGgtgggggtgtctcatctgtatggtaaggaccagggaggaggggttgatgc Alignment from Exonerate_coding2genome CAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGATCTCCTGATCTGGGCCACAGCACACAG tttgtagttggcttctgtctgcttcccttatctctccttctccctcccagTAAGGTGGAAGGGACACACACACCTCCACAGAAAAGAAGCACACCCCTTAAGGAGCGACAACTTCTAAAACCCCTGAGTGAGCGAACTAATAGTGCTGACAGTGAGAAGTCACCTGATCTGGGCCACAGCATACAGgtgggggtgtctcatctgtatggtaaggaccagggaggaggggttgatgc Alignment from GeneWise CAAGGTGGAAGGGACACACACACCTCGGCAGAAGAGGAGCACTCCCCTGAAGGAGCGACAGCTCTCCAAGCCCCTGAGTGAGAGAACCAACAGCTCTGACAGTGAGCGATCTCCTGATCTGGGCCACAGCACACAG tttgtagttggcttctgtctgcttcccttatctctccttctccctcccagTAAGGTGGAAGGGACACACACACCTCCACAGAAAAGAAGCACACCCCTTAAGGAGCGACAACTTCTAAAACCCCTGAGTGAGCGAACTAATAGTGCTGACAGTGAGAAGTCACCTGATCTGGGCCACAGCATACAGgtgggggtgtctcatctgtatggtaaggaccagggaggaggggttgatgc #### Pacs1_ID890_4 --> 0 - 0 Original Alignment TACCCTCATTTCCTTAAGCGAGATGCCAACAAACTGCAGATTATGTTGCAAAGGAGGAAGCGGTACAAGAACCGAACTATCTTGGGCTATAAAACCTTAGCTGTGGGACTCATCAACATGGCAGAG gcaccctaacttccctaacttatcaatttccttcaccctttctcttgtagTATCCTCACTTTCTTAAACGAGATGCCAACAAGCTACAGATTATGCTGCAAAGGAGGAAACGGTATAAGAACCGAGCTATTTTGGGATATAAAACCTTAGCTGTGGGACTCATCAACATGGCAGAGgtatgaagaacccaagtaaatctcactcttgcctggttcgtattcttgcc Alignment from CESAR TACCCTCATTTCCTTAAGCGAGATGCCAACAAACTGCAGATTATGTTGCAAAGGAGGAAGCGGTACAAGAACCGAACTATCTTGGGCTATAAAACCTTAGCTGTGGGACTCATCAACATGGCAGAG gcaccctaacttccctaacttatcaatttccttcaccctttctcttgtagTATCCTCACTTTCTTAAACGAGATGCCAACAAGCTACAGATTATGCTGCAAAGGAGGAAACGGTATAAGAACCGAGCTATTTTGGGATATAAAACCTTAGCTGTGGGACTCATCAACATGGCAGAGgtatgaagaacccaagtaaatctcactcttgcctggttcgtattcttgcc Alignment from Spaln_aa2Genome TACCCTCATTTCCTTAAGCGAGATGCCAACAAACTGCAGATTATGTTGCAAAGGAGGAAGCGGTACAAGAACCGAACTATCTTGGGCTATAAAACCTTAGCTGTGGGACTCATCAACATGGCAGAG gcaccctaacttccctaacttatcaatttccttcaccctttctcttgtagTATCCTCACTTTCTTAAACGAGATGCCAACAAGCTACAGATTATGCTGCAAAGGAGGAAACGGTATAAGAACCGAGCTATTTTGGGATATAAAACCTTAGCTGTGGGACTCATCAACATGGCAGAGgtatgaagaacccaagtaaatctcactcttgcctggttcgtattcttgcc Alignment from Spaln_nt2Genome TACCCTCATTTCCTTAAGCGAGATGCCAACAAACTGCAGATTATGTTGCAAAGGAGGAAGCGGTACAAGAACCGAACTATCTTGGGCTATAAAACCTTAGCTGTGGGACTCATCAACATGGCAGAG gcaccctaacttccctaacttatcaatttccttcaccctttctcttgtagTATCCTCACTTTCTTAAACGAGATGCCAACAAGCTACAGATTATGCTGCAAAGGAGGAAACGGTATAAGAACCGAGCTATTTTGGGATATAAAACCTTAGCTGTGGGACTCATCAACATGGCAGAGgtatgaagaacccaagtaaatctcactcttgcctggttcgtattcttgcc Alignment from Pairagon TACCCTCATTTCCTTAAGCGAGATGCCAACAAACTGCAGATTATGTTGCAAAGGAGGAAGCGGTACAAGAACCGAACTATCTTGGGCTATAAAACCTTAGCTGTGGGACTCATCAACATGGCAGAG gcaccctaacttccctaacttatcaatttccttcaccctttctcttgtagTATCCTCACTTTCTTAAACGAGATGCCAACAAGCTACAGATTATGCTGCAAAGGAGGAAACGGTATAAGAACCGAGCTATTTTGGGATATAAAACCTTAGCTGTGGGACTCATCAACATGGCAGAGgtatgaagaacccaagtaaatctcactcttgcctggttcgtattcttgcc Alignment from Exonerate_protein2genome TACCCTCATTTCCTTAAGCGAGATGCCAACAAACTGCAGATTATGTTGCAAAGGAGGAAGCGGTACAAGAACCGAACTATCTTGGGCTATAAAACCTTAGCTGTGGGACTCATCAACATGGCAGAG gcaccctaacttccctaacttatcaatttccttcaccctttctcttgtagTATCCTCACTTTCTTAAACGAGATGCCAACAAGCTACAGATTATGCTGCAAAGGAGGAAACGGTATAAGAACCGAGCTATTTTGGGATATAAAACCTTAGCTGTGGGACTCATCAACATGGCAGAGgtatgaagaacccaagtaaatctcactcttgcctggttcgtattcttgcc Alignment from Exonerate_coding2genome TACCCTCATTTCCTTAAGCGAGATGCCAACAAACTGCAGATTATGTTGCAAAGGAGGAAGCGGTACAAGAACCGAACTATCTTGGGCTATAAAACCTTAGCTGTGGGACTCATCAACATGGCAGAG gcaccctaacttccctaacttatcaatttccttcaccctttctcttgtagTATCCTCACTTTCTTAAACGAGATGCCAACAAGCTACAGATTATGCTGCAAAGGAGGAAACGGTATAAGAACCGAGCTATTTTGGGATATAAAACCTTAGCTGTGGGACTCATCAACATGGCAGAGgtatgaagaacccaagtaaatctcactcttgcctggttcgtattcttgcc Alignment from GeneWise TACCCTCATTTCCTTAAGCGAGATGCCAACAAACTGCAGATTATGTTGCAAAGGAGGAAGCGGTACAAGAACCGAACTATCTTGGGCTATAAAACCTTAGCTGTGGGACTCATCAACATGGCAGAG gcaccctaacttccctaacttatcaatttccttcaccctttctcttgtagTATCCTCACTTTCTTAAACGAGATGCCAACAAGCTACAGATTATGCTGCAAAGGAGGAAACGGTATAAGAACCGAGCTATTTTGGGATATAAAACCTTAGCTGTGGGACTCATCAACATGGCAGAGgtatgaagaacccaagtaaatctcactcttgcctggttcgtattcttgcc #### Pacs1_ID891_3 --> 0 - 0 Original Alignment GGTTCAAAAAGGATTCTTCGCTCCAATGAGATCATCCTTCCAGCCAGTGGC---CTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAG cttgcaatcaagaataacctgcccaacaatttaaactgttgtattttcagGGCTCAAAGAGGATTCTTCATTCCAATGAGATTATACTTCCAGCCAGTGGTGGTCTTGTGGAGACAGAACTCCAGTTGACCTTCCCGCTCCAGgtgagcaaagtctaaatactgtgcaactgttctcttagttagttagcagc Alignment from CESAR GGTTCAAAAAGGATTCTTCGCTCCAATGAGATCATCCTTCCAGCCAGTGGC---CTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAG cttgcaatcaagaataacctgcccaacaatttaaactgttgtattttcagGGCTCAAAGAGGATTCTTCATTCCAATGAGATTATACTTCCAGCCAGTGGTGGTCTTGTGGAGACAGAACTCCAGTTGACCTTCCCGCTCCAGgtgagcaaagtctaaatactgtgcaactgttctcttagttagttagcagc Alignment from Spaln_aa2Genome GGTTCAAAAAGGATTCTTCGCTCCAATGAGATCATCCTTCCAGCCAGT---GGCCTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAG cttgcaatcaagaataacctgcccaacaatttaaactgttgtattttcagGGCTCAAAGAGGATTCTTCATTCCAATGAGATTATACTTCCAGCCAGTGGTGGTCTTGTGGAGACAGAACTCCAGTTGACCTTCCCGCTCCAGgtgagcaaagtctaaatactgtgcaactgttctcttagttagttagcagc Alignment from Spaln_nt2Genome GGTTCAAAAAGGATTCTTCGCTCCAATGAGATCATCCTTCCAGCCAGTGGC---CTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAG cttgcaatcaagaataacctgcccaacaatttaaactgttgtattttcagGGCTCAAAGAGGATTCTTCATTCCAATGAGATTATACTTCCAGCCAGTGGTGGTCTTGTGGAGACAGAACTCCAGTTGACCTTCCCGCTCCAGgtgagcaaagtctaaatactgtgcaactgttctcttagttagttagcagc Alignment from Pairagon GGTTCAAAAAGGATTCTTCGCTCCAATGAGATCATCCTTCCAGCCA---GTGGCCTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAG cttgcaatcaagaataacctgcccaacaatttaaactgttgtattttcagGGCTCAAAGAGGATTCTTCATTCCAATGAGATTATACTTCCAGCCAGTGGTGGTCTTGTGGAGACAGAACTCCAGTTGACCTTCCCGCTCCAGgtgagcaaagtctaaatactgtgcaactgttctcttagttagttagcagc Alignment from Exonerate_protein2genome GGTTCAAAAAGGATTCTTCGCTCCAATGAGATCATCCTTCCAGCCAGT---GGCCTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAG cttgcaatcaagaataacctgcccaacaatttaaactgttgtattttcagGGCTCAAAGAGGATTCTTCATTCCAATGAGATTATACTTCCAGCCAGTGGTGGTCTTGTGGAGACAGAACTCCAGTTGACCTTCCCGCTCCAGgtgagcaaagtctaaatactgtgcaactgttctcttagttagttagcagc Alignment from Exonerate_coding2genome GGTTCAAAAAGGATTCTTCGCTCCAATGAGATCATCCTTCCAGCCAGT---GGCCTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAG cttgcaatcaagaataacctgcccaacaatttaaactgttgtattttcagGGCTCAAAGAGGATTCTTCATTCCAATGAGATTATACTTCCAGCCAGTGGTGGTCTTGTGGAGACAGAACTCCAGTTGACCTTCCCGCTCCAGgtgagcaaagtctaaatactgtgcaactgttctcttagttagttagcagc Alignment from GeneWise GGTTCAAAAAGGATTCTTCGCTCCAATGAGATCATCCTTCCAGCCAGTGGC---CTGGTGGAGACAGAGCTCCAGTTAACCTTCTCCCTCCAG cttgcaatcaagaataacctgcccaacaatttaaactgttgtattttcagGGCTCAAAGAGGATTCTTCATTCCAATGAGATTATACTTCCAGCCAGTGGTGGTCTTGTGGAGACAGAACTCCAGTTGACCTTCCCGCTCCAGgtgagcaaagtctaaatactgtgcaactgttctcttagttagttagcagc #### Pank1_ID6988_3 --> 0 - 2 Original Alignment ATTGCGGACCTGCAGCTGCATAAACTGGATGAGCTGGACTGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTCGAAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAACCCGTACCCTATGTTGCTGGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTACAAAAGAGTGACGGGGACCag atgtacatggaatgatcaatcctgaatatcctgtctcattgcacccctagATTGCGGACCTCCAATTGCATAAACTGGATGAGCTGGACTGCTTGATTCAGGGCCTTCTATATGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACCATTTTGAAAACCCAACAAATCTCGAGTTGTGTCAAAAAAAACCATACTCTTTGGATAATCCATACCCCATGTTGCTTGTCAACATGGGCTCAGGTGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTATAAGAGAGTGATGGGAACCaggtattgaaagtatcaatcaggggagtaccatacctgattgcccttagggg Alignment from CESAR ATTGCGGACCTGCAGCTGCATAAACTGGATGAGCTGGACTGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTCGAAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAACCCGTACCCTATGTTGCTGGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTACAAAAGAGTGACGGGGACCag atgtacatggaatgatcaatcctgaatatcctgtctcattgcacccctagATTGCGGACCTCCAATTGCATAAACTGGATGAGCTGGACTGCTTGATTCAGGGCCTTCTATATGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACCATTTTGAAAACCCAACAAATCTCGAGTTGTGTCAAAAAAAACCATACTCTTTGGATAATCCATACCCCATGTTGCTTGTCAACATGGGCTCAGGTGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTATAAGAGAGTGATGGGAACCaggtattgaaagtatcaatcaggggagtaccatacctgattgcccttagggg Alignment from Spaln_aa2Genome ATTGCGGACCTGCAGCTGCATAAACTGGATGAGCTGGACTGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTCGAAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAACCCGTACCCTATGTTGCTGGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTACAAAAGAGTGACGGGGACCAG atgtacatggaatgatcaatcctgaatatcctgtctcattgcacccctagATTGCGGACCTCCAATTGCATAAACTGGATGAGCTGGACTGCTTGATTCAGGGCCTTCTATATGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACCATTTTGAAAACCCAACAAATCTCGAGTTGTGTCAAAAAAAACCATACTCTTTGGATAATCCATACCCCATGTTGCTTGTCAACATGGGCTCAGGTGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTATAAGAGAGTGATGGGAACCAGgtattgaaagtatcaatcaggggagtaccatacctgattgcccttagggg Alignment from Spaln_nt2Genome ATTGCGGACCTGCAGCTGCATAAACTGGATGAGCTGGACTGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTCGAAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAACCCGTACCCTATGTTGCTGGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTACAAAAGAGTGACGGGGACCAG atgtacatggaatgatcaatcctgaatatcctgtctcattgcacccctagATTGCGGACCTCCAATTGCATAAACTGGATGAGCTGGACTGCTTGATTCAGGGCCTTCTATATGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACCATTTTGAAAACCCAACAAATCTCGAGTTGTGTCAAAAAAAACCATACTCTTTGGATAATCCATACCCCATGTTGCTTGTCAACATGGGCTCAGGTGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTATAAGAGAGTGATGGGAACCAGgtattgaaagtatcaatcaggggagtaccatacctgattgcccttagggg Alignment from Pairagon ATTGCGGACCTGCAGCTGCATAAACTGGATGAGCTGGACTGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTCGAAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAACCCGTACCCTATGTTGCTGGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTACAAAAGAGTGACGGGGACCAG atgtacatggaatgatcaatcctgaatatcctgtctcattgcacccctagATTGCGGACCTCCAATTGCATAAACTGGATGAGCTGGACTGCTTGATTCAGGGCCTTCTATATGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACCATTTTGAAAACCCAACAAATCTCGAGTTGTGTCAAAAAAAACCATACTCTTTGGATAATCCATACCCCATGTTGCTTGTCAACATGGGCTCAGGTGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTATAAGAGAGTGATGGGAACCAGgtattgaaagtatcaatcaggggagtaccatacctgattgcccttagggg Alignment from Exonerate_protein2genome ATTGCGGACCTGCAGCTGCATAAACTGGATGAGCTGGACTGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTCGAAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAACCCGTACCCTATGTTGCTGGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTACAAAAGAGTGACGGGGACCAG atgtacatggaatgatcaatcctgaatatcctgtctcattgcacccctagATTGCGGACCTCCAATTGCATAAACTGGATGAGCTGGACTGCTTGATTCAGGGCCTTCTATATGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACCATTTTGAAAACCCAACAAATCTCGAGTTGTGTCAAAAAAAACCATACTCTTTGGATAATCCATACCCCATGTTGCTTGTCAACATGGGCTCAGGTGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTATAAGAGAGTGATGGGAACCAGgtattgaaagtatcaatcaggggagtaccatacctgattgcccttagggg Alignment from Exonerate_coding2genome ATTGCGGACCTGCAGCTGCATAAACTGGATGAGCTGGACTGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTCGAAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAACCCGTACCCTATGTTGCTGGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTACAAAAGAGTGACGGGGACCAG atgtacatggaatgatcaatcctgaatatcctgtctcattgcacccctagATTGCGGACCTCCAATTGCATAAACTGGATGAGCTGGACTGCTTGATTCAGGGCCTTCTATATGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACCATTTTGAAAACCCAACAAATCTCGAGTTGTGTCAAAAAAAACCATACTCTTTGGATAATCCATACCCCATGTTGCTTGTCAACATGGGCTCAGGTGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTATAAGAGAGTGATGGGAACCAGgtattgaaagtatcaatcaggggagtaccatacctgattgcccttagggg Alignment from GeneWise ATTGCGGACCTGCAGCTGCATAAACTGGATGAGCTGGACTGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTCGAAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAACCCGTACCCTATGTTGCTGGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTACAAAAGAGTGACGGGGACCAG atgtacatggaatgatcaatcctgaatatcctgtctcattgcacccctagATTGCGGACCTCCAATTGCATAAACTGGATGAGCTGGACTGCTTGATTCAGGGCCTTCTATATGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACCATTTTGAAAACCCAACAAATCTCGAGTTGTGTCAAAAAAAACCATACTCTTTGGATAATCCATACCCCATGTTGCTTGTCAACATGGGCTCAGGTGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTATAAGAGAGTGATGGGAACCAGgtattgaaagtatcaatcaggggagtaccatacctgattgcccttagggg #### Papss2_ID6706_2 --> 0 - 1 Original Alignment GACCAGCAAAAATCCACCAATGTGGTCTACCAGGCCCATCATGTGAGCAGGAACAAGAGAGGACAAGTGGTTGGAACCAGGGGAGGATTCCGAGGATGTACCGTGTGGCTAACAg actgcaactactctattatgcttgctcatggcctttgttttgatcttcagGACCAGCAGAAATCCACCAATGTGGTATATCAGGCCCATCATGTGAGTAGAAACAAAAGAGGTCAAGTAGTTGGAACCAGGGGAGGATTCCGAGGGTGTACTGTCTGGCTCACAggtaagtattttcctttttgttcatgttctgaagtggcaatgcttgtttct Alignment from CESAR GACCAGCAAAAATCCACCAATGTGGTCTACCAGGCCCATCATGTGAGCAGGAACAAGAGAGGACAAGTGGTTGGAACCAGGGGAGGATTCCGAGGATGTACCGTGTGGCTAACAg actgcaactactctattatgcttgctcatggcctttgttttgatcttcagGACCAGCAGAAATCCACCAATGTGGTATATCAGGCCCATCATGTGAGTAGAAACAAAAGAGGTCAAGTAGTTGGAACCAGGGGAGGATTCCGAGGGTGTACTGTCTGGCTCACAggtaagtattttcctttttgttcatgttctgaagtggcaatgcttgtttct Alignment from Spaln_aa2Genome GACCAGCAAAAATCCACCAATGTGGTCTACCAGGCCCATCATGTGAGCAGGAACAAGAGAGGACAAGTGGTTGGAACCAGGGGAGGATTCCGAGGATGTACCGTGTGGCTAACAG actgcaactactctattatgcttgctcatggcctttgttttgatcttcagGACCAGCAGAAATCCACCAATGTGGTATATCAGGCCCATCATGTGAGTAGAAACAAAAGAGGTCAAGTAGTTGGAACCAGGGGAGGATTCCGAGGGTGTACTGTCTGGCTCACAGgtaagtattttcctttttgttcatgttctgaagtggcaatgcttgtttct Alignment from Spaln_nt2Genome GACCAGCAAAAATCCACCAATGTGGTCTACCAGGCCCATCATGTGAGCAGGAACAAGAGAGGACAAGTGGTTGGAACCAGGGGAGGATTCCGAGGATGTACCGTGTGGCTAACAG actgcaactactctattatgcttgctcatggcctttgttttgatcttcagGACCAGCAGAAATCCACCAATGTGGTATATCAGGCCCATCATGTGAGTAGAAACAAAAGAGGTCAAGTAGTTGGAACCAGGGGAGGATTCCGAGGGTGTACTGTCTGGCTCACAGgtaagtattttcctttttgttcatgttctgaagtggcaatgcttgtttct Alignment from Pairagon GACCAGCAAAAATCCACCAATGTGGTCTACCAGGCCCATCATGTGAGCAGGAACAAGAGAGGACAAGTGGTTGGAACCAGGGGAGGATTCCGAGGATGTACCGTGTGGCTAACAG actgcaactactctattatgcttgctcatggcctttgttttgatcttcagGACCAGCAGAAATCCACCAATGTGGTATATCAGGCCCATCATGTGAGTAGAAACAAAAGAGGTCAAGTAGTTGGAACCAGGGGAGGATTCCGAGGGTGTACTGTCTGGCTCACAGgtaagtattttcctttttgttcatgttctgaagtggcaatgcttgtttct Alignment from Exonerate_protein2genome GACCAGCAAAAATCCACCAATGTGGTCTACCAGGCCCATCATGTGAGCAGGAACAAGAGAGGACAAGTGGTTGGAACCAGGGGAGGATTCCGAGGATGTACCGTGTGGCTAACAG actgcaactactctattatgcttgctcatggcctttgttttgatcttcagGACCAGCAGAAATCCACCAATGTGGTATATCAGGCCCATCATGTGAGTAGAAACAAAAGAGGTCAAGTAGTTGGAACCAGGGGAGGATTCCGAGGGTGTACTGTCTGGCTCACAGgtaagtattttcctttttgttcatgttctgaagtggcaatgcttgtttct Alignment from Exonerate_coding2genome GACCAGCAAAAATCCACCAATGTGGTCTACCAGGCCCATCATGTGAGCAGGAACAAGAGAGGACAAGTGGTTGGAACCAGGGGAGGATTCCGAGGATGTACCGTGTGGCTAACAG actgcaactactctattatgcttgctcatggcctttgttttgatcttcagGACCAGCAGAAATCCACCAATGTGGTATATCAGGCCCATCATGTGAGTAGAAACAAAAGAGGTCAAGTAGTTGGAACCAGGGGAGGATTCCGAGGGTGTACTGTCTGGCTCACAGgtaagtattttcctttttgttcatgttctgaagtggcaatgcttgtttct Alignment from GeneWise TCGGGGGTCAAGAAGCAGAAGACGGACCAGCAAAAATCCACCAATGTGGTCTACCAGGCCCATCATGTGAGCAGGAACAAGAGAGGACAAGTGGTTGGAACCAGGGGAGGATTCCGAGGATGTACCGTGTGGCTAACAG actgcaactactctattatgcttgctCATGGCCTTTGTTTTGATCTTCAGGACCAGCAGAAATCCACCAATGTGGTATATCAGGCCCATCATGTGAGTAGAAACAAAAGAGGTCAAGTAGTTGGAACCAGGGGAGGATTCCGAGGGTGTACTGTCTGGCTCACAGgtaagtattttcctttttgttcatgttctgaagtggcaatgcttgtttct #### Papss2_ID6709_5 --> 2 - 0 Original Alignment ggTTTACAGGCATCGATTCTGACTATGAGAAACCTGAAACTCCAGAGTGTGTGCTGAAGACCAACCTGTCTTCAGTAAGCGACTGTGTGCAACAGGTGGTGGAACTTTTGCAGGAGCAG tggaccatttaacaactaaagctacacactgcccctttttcctgacccaggcTTTACGGGGACCGATTCTGACTATGAAAGACCTGAAACTCCAGAATGTGTGTTAAAAACCAATTTGTCATCAGTGAGTGATTGTGTGCAACAGGTGATAGAACTTCTGCAAGAGCAGgtgagagtatgggaataaaaggatgcaagttatccagatccacagctctt Alignment from CESAR ggTTTACAGGCATCGATTCTGACTATGAGAAACCTGAAACTCCAGAGTGTGTGCTGAAGACCAACCTGTCTTCAGTAAGCGACTGTGTGCAACAGGTGGTGGAACTTTTGCAGGAGCAG tggaccatttaacaactaaagctacacactgcccctttttcctgacccaggcTTTACGGGGACCGATTCTGACTATGAAAGACCTGAAACTCCAGAATGTGTGTTAAAAACCAATTTGTCATCAGTGAGTGATTGTGTGCAACAGGTGATAGAACTTCTGCAAGAGCAGgtgagagtatgggaataaaaggatgcaagttatccagatccacagctctt Alignment from Spaln_aa2Genome GGTTTACAGGCATCGATTCTGACTATGAGAAACCTGAAACTCCAGAGTGTGTGCTGAAGACCAACCTGTCTTCAGTAAGCGACTGTGTGCAACAGGTGGTGGAACTTTTGCAGGAGCAG tggaccatttaacaactaaagctacacactgcccctttttcctgacccagGCTTTACGGGGACCGATTCTGACTATGAAAGACCTGAAACTCCAGAATGTGTGTTAAAAACCAATTTGTCATCAGTGAGTGATTGTGTGCAACAGGTGATAGAACTTCTGCAAGAGCAGgtgagagtatgggaataaaaggatgcaagttatccagatccacagctctt Alignment from Spaln_nt2Genome GGTTTACAGGCATCGATTCTGACTATGAGAAACCTGAAACTCCAGAGTGTGTGCTGAAGACCAACCTGTCTTCAGTAAGCGACTGTGTGCAACAGGTGGTGGAACTTTTGCAGGAGCAG tggaccatttaacaactaaagctacacactgcccctttttcctgacccagGCTTTACGGGGACCGATTCTGACTATGAAAGACCTGAAACTCCAGAATGTGTGTTAAAAACCAATTTGTCATCAGTGAGTGATTGTGTGCAACAGGTGATAGAACTTCTGCAAGAGCAGgtgagagtatgggaataaaaggatgcaagttatccagatccacagctctt Alignment from Pairagon GGTTTACAGGCATCGATTCTGACTATGAGAAACCTGAAACTCCAGAGTGTGTGCTGAAGACCAACCTGTCTTCAGTAAGCGACTGTGTGCAACAGGTGGTGGAACTTTTGCAGGAGCAG tggaccatttaacaactaaagctacacactgcccctttttcctgacccagGCTTTACGGGGACCGATTCTGACTATGAAAGACCTGAAACTCCAGAATGTGTGTTAAAAACCAATTTGTCATCAGTGAGTGATTGTGTGCAACAGGTGATAGAACTTCTGCAAGAGCAGgtgagagtatgggaataaaaggatgcaagttatccagatccacagctctt Alignment from Exonerate_protein2genome GGTTTACAGGCATCGATTCTGACTATGAGAAACCTGAAACTCCAGAGTGTGTGCTGAAGACCAACCTGTCTTCAGTAAGCGACTGTGTGCAACAGGTGGTGGAACTTTTGCAGGAGCAG tggaccatttaacaactaaagctacacactgcccctttttcctgacccagGCTTTACGGGGACCGATTCTGACTATGAAAGACCTGAAACTCCAGAATGTGTGTTAAAAACCAATTTGTCATCAGTGAGTGATTGTGTGCAACAGGTGATAGAACTTCTGCAAGAGCAGgtgagagtatgggaataaaaggatgcaagttatccagatccacagctctt Alignment from Exonerate_coding2genome GGTTTACAGGCATCGATTCTGACTATGAGAAACCTGAAACTCCAGAGTGTGTGCTGAAGACCAACCTGTCTTCAGTAAGCGACTGTGTGCAACAGGTGGTGGAACTTTTGCAGGAGCAG tggaccatttaacaactaaagctacacactgcccctttttcctgacccagGCTTTACGGGGACCGATTCTGACTATGAAAGACCTGAAACTCCAGAATGTGTGTTAAAAACCAATTTGTCATCAGTGAGTGATTGTGTGCAACAGGTGATAGAACTTCTGCAAGAGCAGgtgagagtatgggaataaaaggatgcaagttatccagatccacagctctt Alignment from GeneWise GGTTTACAGGCATCGATTCTGACTATGAGAAACCTGAAACTCCAGAGTGTGTGCTGAAGACCAACCTGTCTTCAGTAAGCGACTGTGTGCAACAGGTGGTGGAACTTTTGCAGGAGCAG tggaccatttaacaactaaagctacacactgcccctttttcctgacccagGCTTTACGGGGACCGATTCTGACTATGAAAGACCTGAAACTCCAGAATGTGTGTTAAAAACCAATTTGTCATCAGTGAGTGATTGTGTGCAACAGGTGATAGAACTTCTGCAAGAGCAGgtgagagtatgggaataaaaggatgcaagttatccagatccacagctctt #### Patl1_ID3317_5 --> 0 - 0 Original Alignment GAAATGCCTACAGTGTCTGTATTAGAGTATGCCTTGCCTCAGAGGCCCCTGCAGGGCCCAGAAGATGATCGG---------GACCTTTCTGAGCGAGCTTTACCAAGGCGGTCAACATCACCTATCATTGGAAGTCCTCCTGTTAGAGCCGTTCCTATAGGCACCCCACCTAAGCAGATGGCTGTTCCCAGCTTCAACCAACAG atcaaagattggtaactgcattttaggagtggcaatggctctgcttccagGAA---TCTACAGTTCCAGACTTAGAG---TCCTTTCCTCAGAGACCCCTCCAAGGCCCAGAAGATGATCAGGACCTTTCTGACCTGACAGAACATTCTTTACCAAGAAGGTCTACATCATTAATTATTGGAAGCCATCTGGTCAGAGCTGTCCTTATAGGCATCCCACCAAAGCAGATGGCTGTT------CTCAACCAAAAAgtatggtctagaaaatactcggaccagataaacagaaaacccggactatt Alignment from CESAR GAAATGCCTACAGTGTCTGTATTAGAGTATGCCTTGCCTCAGAGGCCCCTGCAGGGCCCAGAAGATGATCGGGACCTTTCT---------GAGCGAGCTTTACCAAGGCGGTCAACATCACCTATCATTGGAAGTCCTCCTGTTAGAGCCGTTCCTATAGGCACCCCACCTAAGCAGATGGCTGTTCCCAGCTTCAACCAACAG atcaaagattggtaactgcattttaggagtggcaatggctctgcttccagGAA---TCTACAGTTCCAGACTTAGAG---TCCTTTCCTCAGAGACCCCTCCAAGGCCCAGAAGATGATCAGGACCTTTCTGACCTGACAGAACATTCTTTACCAAGAAGGTCTACATCATTAATTATTGGAAGCCATCTGGTCAGAGCTGTCCTTATAGGCATCCCACCAAAGCAGATGGCTGTT------CTCAACCAAAAAgtatggtctagaaaatactcggaccagataaacagaaaacccggactatt Alignment from Spaln_aa2Genome GAAATGCCTACAGTGTCTGTATTAGAGTATGCCTTGCCTCAGAGGCCCCTGCAGGGCCCAGAAGATGATCGGGACCTTTCT---------GAGCGAGCTTTACCAAGGCGGTCAACATCACCTATCATTGGAAGTCCTCCTGTTAGAGCCGTTCCTATAGGCACCCCACCTAAGCAGATGGCTGTTCCCAGCTTCAACCAACAG atcaaagattggtaactgcattttaggagtggcaatggctctgcttccagGAA---TCTACAGTTCCAGACTTAGAG---TCCTTTCCTCAGAGACCCCTCCAAGGCCCAGAAGATGATCAGGACCTTTCTGACCTGACAGAACATTCTTTACCAAGAAGGTCTACATCATTAATTATTGGAAGCCATCTGGTCAGAGCTGTCCTTATAGGCATCCCACCAAAGCAGATGGCTGTT------CTCAACCAAAAAgtatggtctagaaaatactcggaccagataaacagaaaacccggactatt Alignment from Spaln_nt2Genome GAAATGCCTACAGTGTCTGTATTAGAGTATGCCTTGCCTCAGAGGCCCCTGCAGGGCCCAGAAGATGATCGGGACCTTTCTGAGC-----GAGC----TTTACCAAGGCGGTCAACATCACCTATCATTGGAAGTCCTCCTGTTAGAGCCGTTCCTATAGGCACCCCACCTAAGCAGATGGCTGTTCCCAGCTTCAACCAACAG atcaaagattggtaactgcattttaggagtggcaatggctctgcttccagGAA---TCTACAGTTCCAGACTTAGAGT---CCTTTCCTCAGAGACCCCTCCAAGGCCCAGAAGATGATCAGGACCTTTCTGACCTGACAGAACATTCTTTACCAAGAAGGTCTACATCATTAATTATTGGAAGCCATCTGGTCAGAGCTGTCCTTATAGGCATCCCACCAAAGCAGATGGCTGTTC------TCAACCAAAAAgtatggtctagaaaatactcggaccagataaacagaaaacccggactatt Alignment from Pairagon GAAATGCCTACAGTGTCTGTATTAGAGTATGCCTTGCCTCAGAGGCCCCTGCAGGGCCCAGAAGATGATCGGGACCTTTCTGAGCGAG---------CTTTACCAAGGCGGTCAACATCACCTATCATTGGAAGTCCTCCTGTTAGAGCCGTTCCTATAGGCACCCCACCTAAGCAGATGGCTGTTCCCAGCTTCAACCAACAG atcaaagattggtaactgcattttaggagtggcaatggctctgcttccagGAA---TCTACAGTTCCAGACTTAGAGT---CCTTTCCTCAGAGACCCCTCCAAGGCCCAGAAGATGATCAGGACCTTTCTGACCTGACAGAACATTCTTTACCAAGAAGGTCTACATCATTAATTATTGGAAGCCATCTGGTCAGAGCTGTCCTTATAGGCATCCCACCAAAGCAGATGGCTGTTC------TCAACCAAAAAgtatggtctagaaaatactcggaccagataaacagaaaacccggactatt Alignment from Exonerate_protein2genome GAAATGCCTACAGTGTCTGTATTAGAGTATGCCTTGCCTCAGAGGCCCCTGCAGGGCCCAGAAGATGATCGGGACCTTTCT---------GAGCGAGCTTTACCAAGGCGGTCAACATCACCTATCATTGGAAGTCCTCCTGTTAGAGCCGTTCCTATAGGCACCCCACCTAAGCAGATGGCTGTTCCCAGCTTCAACCAACAG atcaaagattggtaactgcattttaggagtggcaatggctctgcttccagGAA---TCTACAGTTCCAGACTTAGAG---TCCTTTCCTCAGAGACCCCTCCAAGGCCCAGAAGATGATCAGGACCTTTCTGACCTGACAGAACATTCTTTACCAAGAAGGTCTACATCATTAATTATTGGAAGCCATCTGGTCAGAGCTGTCCTTATAGGCATCCCACCAAAGCAGATGGCTGTT------CTCAACCAAAAAgtatggtctagaaaatactcggaccagataaacagaaaacccggactatt Alignment from Exonerate_coding2genome GAAATGCCTACAGTGTCTGTATTAGAGTATGCCTTGCCTCAGAGGCCCCTGCAGGGCCCAGAAGATGATCGGGACCTTTCT---------GAGCGAGCTTTACCAAGGCGGTCAACATCACCTATCATTGGAAGTCCTCCTGTTAGAGCCGTTCCTATAGGCACCCCACCTAAGCAGATGGCTGTTCCCAGCTTCAACCAACAG atcaaagattggtaactgcattttaggagtggcaatggctctgcttccagGAA---TCTACAGTTCCAGACTTAGAG---TCCTTTCCTCAGAGACCCCTCCAAGGCCCAGAAGATGATCAGGACCTTTCTGACCTGACAGAACATTCTTTACCAAGAAGGTCTACATCATTAATTATTGGAAGCCATCTGGTCAGAGCTGTCCTTATAGGCATCCCACCAAAGCAGATGGCTGTT------CTCAACCAAAAAgtatggtctagaaaatactcggaccagataaacagaaaacccggactatt Alignment from GeneWise GAAATGCCTACAGTGTCTGTATTAGAGTATGCCTTGCCTCAGAGGCCCCTGCAGGGCCCAGAAGATGATCGGGACCTTTCT---------GAGCGAGCTTTACCAAGGCGGTCAACATCACCTATCATTGGAAGTCCTCCTGTTAGAGCCGTTCCTATAGGCACCCCACCTAAGCAGATGGCTGTTCCCAGCTTCAACCAACAG atcaaagattggtaactgcattttaggagtggcaatggctctgcttccagGAATCT---ACAGTTCCAGACTTAGAG---TCCTTTCCTCAGAGACCCCTCCAAGGCCCAGAAGATGATCAGGACCTTTCTGACCTGACAGAACATTCTTTACCAAGAAGGTCTACATCATTAATTATTGGAAGCCATCTGGTCAGAGCTGTCCTTATAGGCATCCCACCAAAGCAGATGGCTGTT------CTCAACCAAAAAgtatggtctagaaaatactcggaccagataaacagaaaacccggactatt #### Patl1_ID3327_12 --> 2 - 0 Original Alignment tgCAGTTTGAGGGCTCGTTGGGGAAGCTTACTGTCTCTAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTGTGACATCTCGAAGTGAGGATGAT gatggacccagatcaaaggttaggagtttgacctgtggccactccttcagtgCAGTTTGATGGCTCATTGGGGAAACTTACTGTCTCCAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTGTGACATCTAGAAGCGAGGATGATgtgtgtttgagggcagtgtttacgggcagttactatagcaaaatccatcc Alignment from CESAR tgCAGTTTGAGGGCTCGTTGGGGAAGCTTACTGTCTCTAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTGTGACATCTCGAAGTGAGGATGAT gatggacccagatcaaaggttaggagtttgacctgtggccactccttcagtgCAGTTTGATGGCTCATTGGGGAAACTTACTGTCTCCAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTGTGACATCTAGAAGCGAGGATGATgtgtgtttgagggcagtgtttacgggcagttactatagcaaaatccatcc Alignment from Spaln_aa2Genome TGCAGTTTGAGGGCTCGTTGGGGAAGCTTACTGTCTCTAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTGTGACATCTCGAAGTGAGGATGAT gatggacccagatcaaaggttaggagtttgacctgtggccactccttcagTGCAGTTTGATGGCTCATTGGGGAAACTTACTGTCTCCAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTGTGACATCTAGAAGCGAGGATGATgtgtgtttgagggcagtgtttacgggcagttactatagcaaaatccatcc Alignment from Spaln_nt2Genome TGCAGTTTGAGGGCTCGTTGGGGAAGCTTACTGTCTCTAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTGTGACATCTCGAAGTGAGGATGAT gatggacccagatcaaaggttaggagtttgacctgtggccactccttcagTGCAGTTTGATGGCTCATTGGGGAAACTTACTGTCTCCAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTGTGACATCTAGAAGCGAGGATGATgtgtgtttgagggcagtgtttacgggcagttactatagcaaaatccatcc Alignment from Pairagon TGCAGTTTGAGGGCTCGTTGGGGAAGCTTACTGTCTCTAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTGTGACATCTCGAAGTGAGGATGAT gatggacccagatcaaaggttaggagtttgacctgtggccactccttcagTGCAGTTTGATGGCTCATTGGGGAAACTTACTGTCTCCAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTGTGACATCTAGAAGCGAGGATGATgtgtgtttgagggcagtgtttacgggcagttactatagcaaaatccatcc Alignment from Exonerate_protein2genome TGCAGTTTGAGGGCTCGTTGGGGAAGCTTACTGTCTCTAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTGTGACATCTCGAAGTGAGGATGAT gatggacccagatcaaaggttaggagtttgacctgtggccactccttcagTGCAGTTTGATGGCTCATTGGGGAAACTTACTGTCTCCAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTGTGACATCTAGAAGCGAGGATGATgtgtgtttgagggcagtgtttacgggcagttactatagcaaaatccatcc Alignment from Exonerate_coding2genome TGCAGTTTGAGGGCTCGTTGGGGAAGCTTACTGTCTCTAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTGTGACATCTCGAAGTGAGGATGAT gatggacccagatcaaaggttaggagtttgacctgtggccactccttcagTGCAGTTTGATGGCTCATTGGGGAAACTTACTGTCTCCAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTGTGACATCTAGAAGCGAGGATGATgtgtgtttgagggcagtgtttacgggcagttactatagcaaaatccatcc Alignment from GeneWise TGCAGTTTGAGGGCTCGTTGGGGAAGCTTACTGTCTCTAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTGTGACATCTCGAAGTGAGGATGAT gatggacccagatcaaaggttaggagtttgacctgtggccactccttcagTGCAGTTTGATGGCTCATTGGGGAAACTTACTGTCTCCAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTGTGACATCTAGAAGCGAGGATGATgtgtgtttgagggcagtgtttacgggcagttactatagcaaaatccatcc #### Patl1_ID3330_15 --> 1 - 0 Original Alignment gCCAAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGATGAG ctgttccacattttttttggctgtttatcttatttctcttttaattctagaCCCAGTCATGACCACTTTGTACAGATCATGTGTATCCAAAAAGGGAAGAGAATT---GCCCGGATTATCCCTTTCCTCTCTACAGAGCAAGCCGCTGACATTCTCATGGCAACTGCCAGGAATCTCCCCTTCCTTATCAAGAAAGATGCCCTAGATGAGgtaagagttgagtcacatgtaaagactcttaaaaaaaggtcaagacagaa Alignment from CESAR gCCAAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGATGAG ctgttccacattttttttggctgtttatcttatttctcttttaattctagaCCCAGTCATGACCACTTTGTACAGATCATGTGTATCCAAAAAGGGAAGAGA---ATTGCCCGGATTATCCCTTTCCTCTCTACAGAGCAAGCCGCTGACATTCTCATGGCAACTGCCAGGAATCTCCCCTTCCTTATCAAGAAAGATGCCCTAGATGAGgtaagagttgagtcacatgtaaagactcttaaaaaaaggtcaagacagaa Alignment from Spaln_aa2Genome GCCAAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGATGAG ctgttccacattttttttggctgtttatcttatttctcttttaattctagACCCAGTCATGACCACTTTGTACAGATCATGTGTATCCAAAAAGGGAAGAGA---ATTGCCCGGATTATCCCTTTCCTCTCTACAGAGCAAGCCGCTGACATTCTCATGGCAACTGCCAGGAATCTCCCCTTCCTTATCAAGAAAGATGCCCTAGATGAGgtaagagttgagtcacatgtaaagactcttaaaaaaaggtcaagacagaa Alignment from Spaln_nt2Genome GCCAAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGATGAG ctgttccacattttttttggctgtttatcttatttctcttttaattctagACCCAGTCATGACCACTTTGTACAGATCATGTGTATCCAAAAAGGGAAGAGAA---TTGCCCGGATTATCCCTTTCCTCTCTACAGAGCAAGCCGCTGACATTCTCATGGCAACTGCCAGGAATCTCCCCTTCCTTATCAAGAAAGATGCCCTAGATGAGgtaagagttgagtcacatgtaaagactcttaaaaaaaggtcaagacagaa Alignment from Pairagon GCCAAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGATGAG ctgttccacattttttttggctgtttatcttatttctcttttaattctagACCCAGTCATGACCACTTTGTACAGATCATGTGTATCCAAAAAGGGAAGAGAA---TTGCCCGGATTATCCCTTTCCTCTCTACAGAGCAAGCCGCTGACATTCTCATGGCAACTGCCAGGAATCTCCCCTTCCTTATCAAGAAAGATGCCCTAGATGAGgtaagagttgagtcacatgtaaagactcttaaaaaaaggtcaagacagaa Alignment from Exonerate_protein2genome GCCAAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGATGAG ctgttccacattttttttggctgtttatcttatttctcttttaattctagACCCAGTCATGACCACTTTGTACAGATCATGTGTATCCAAAAAGGGAAGAGA---ATTGCCCGGATTATCCCTTTCCTCTCTACAGAGCAAGCCGCTGACATTCTCATGGCAACTGCCAGGAATCTCCCCTTCCTTATCAAGAAAGATGCCCTAGATGAGgtaagagttgagtcacatgtaaagactcttaaaaaaaggtcaagacagaa Alignment from Exonerate_coding2genome GCCAAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGATGAG ctgttccacattttttttggctgtttatcttatttctcttttaattctagACCCAGTCATGACCACTTTGTACAGATCATGTGTATCCAAAAAGGGAAGAGA---ATTGCCCGGATTATCCCTTTCCTCTCTACAGAGCAAGCCGCTGACATTCTCATGGCAACTGCCAGGAATCTCCCCTTCCTTATCAAGAAAGATGCCCTAGATGAGgtaagagttgagtcacatgtaaagactcttaaaaaaaggtcaagacagaa Alignment from GeneWise GCCAAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGATGAG ctgttccacattttttttggctgtttatcttatttctcttttaattctagACCCAGTCATGACCACTTTGTACAGATCATGTGTATCCAAAAAGGGAAGAGA---ATTGCCCGGATTATCCCTTTCCTCTCTACAGAGCAAGCCGCTGACATTCTCATGGCAACTGCCAGGAATCTCCCCTTCCTTATCAAGAAAGATGCCCTAGATGAGgtaagagttgagtcacatgtaaagactcttaaaaaaaggtcaagacagaa #### Pax2_ID9153_5 --> 2 - 1 Original Alignment ttCCCAGCACGGCCTCCCCTCCTGTTTCCAGCGCCTCTAACGACCCAGTGGGATCCTACTCCATCAACGGGATCCTGGGGATTCCTCGCTCCAACGGTGAGAAGAGGAAACGCGAGGAAg gccactacttttgtcctcaagtatctaacatttggtcctgtccccctcagtaCCCAGCACTGCCTCCCCTCCTGTATCCAGTGCCTCTAATGATCCAGTGGGATCTTACTCCATCAACGGGATTCTGGGAATTCCTCGCTCCAATGGTGAGAAAAGGAACCGTGAGGAAggtaagtaagtgtgtgggctcttagaaccccctgactgttgcattcttatt Alignment from CESAR ttCCCAGCACGGCCTCCCCTCCTGTTTCCAGCGCCTCTAACGACCCAGTGGGATCCTACTCCATCAACGGGATCCTGGGGATTCCTCGCTCCAACGGTGAGAAGAGGAAACGCGAGGAAg gccactacttttgtcctcaagtatctaacatttggtcctgtccccctcagtaCCCAGCACTGCCTCCCCTCCTGTATCCAGTGCCTCTAATGATCCAGTGGGATCTTACTCCATCAACGGGATTCTGGGAATTCCTCGCTCCAATGGTGAGAAAAGGAACCGTGAGGAAggtaagtaagtgtgtgggctcttagaaccccctgactgttgcattcttatt Alignment from Spaln_aa2Genome TTCCCAGCACGGCCTCCCCTCCTGTTTCCAGCGCCTCTAACGACCCAGTGGGATCCTACTCCATCAACGGGATCCTGGGGATTCCTCGCTCCAACGGTGAGAAGAGGAAACGCGAGGAAG gccactacttttgtcctcaagtatctaacatttggtcctgtccccctcagTACCCAGCACTGCCTCCCCTCCTGTATCCAGTGCCTCTAATGATCCAGTGGGATCTTACTCCATCAACGGGATTCTGGGAATTCCTCGCTCCAATGGTGAGAAAAGGAACCGTGAGGAAGgtaagtaagtgtgtgggctcttagaaccccctgactgttgcattcttatt Alignment from Spaln_nt2Genome TTCCCAGCACGGCCTCCCCTCCTGTTTCCAGCGCCTCTAACGACCCAGTGGGATCCTACTCCATCAACGGGATCCTGGGGATTCCTCGCTCCAACGGTGAGAAGAGGAAACGCGAGGAAG gccactacttttgtcctcaagtatctaacatttggtcctgtccccctcagTACCCAGCACTGCCTCCCCTCCTGTATCCAGTGCCTCTAATGATCCAGTGGGATCTTACTCCATCAACGGGATTCTGGGAATTCCTCGCTCCAATGGTGAGAAAAGGAACCGTGAGGAAGgtaagtaagtgtgtgggctcttagaaccccctgactgttgcattcttatt Alignment from Pairagon TTCCCAGCACGGCCTCCCCTCCTGTTTCCAGCGCCTCTAACGACCCAGTGGGATCCTACTCCATCAACGGGATCCTGGGGATTCCTCGCTCCAACGGTGAGAAGAGGAAACGCGAGGAAG gccactacttttgtcctcaagtatctaacatttggtcctgtccccctcagTACCCAGCACTGCCTCCCCTCCTGTATCCAGTGCCTCTAATGATCCAGTGGGATCTTACTCCATCAACGGGATTCTGGGAATTCCTCGCTCCAATGGTGAGAAAAGGAACCGTGAGGAAGgtaagtaagtgtgtgggctcttagaaccccctgactgttgcattcttatt Alignment from Exonerate_protein2genome TTCCCAGCACGGCCTCCCCTCCTGTTTCCAGCGCCTCTAACGACCCAGTGGGATCCTACTCCATCAACGGGATCCTGGGGATTCCTCGCTCCAACGGTGAGAAGAGGAAACGCGAGGAAG gccactacttttgtcctcaagtatctaacatttggtcctgtccccctcagTACCCAGCACTGCCTCCCCTCCTGTATCCAGTGCCTCTAATGATCCAGTGGGATCTTACTCCATCAACGGGATTCTGGGAATTCCTCGCTCCAATGGTGAGAAAAGGAACCGTGAGGAAGgtaagtaagtgtgtgggctcttagaaccccctgactgttgcattcttatt Alignment from Exonerate_coding2genome TTCCCAGCACGGCCTCCCCTCCTGTTTCCAGCGCCTCTAACGACCCAGTGGGATCCTACTCCATCAACGGGATCCTGGGGATTCCTCGCTCCAACGGTGAGAAGAGGAAACGCGAGGAAG gccactacttttgtcctcaagtatctaacatttggtcctgtccccctcagTACCCAGCACTGCCTCCCCTCCTGTATCCAGTGCCTCTAATGATCCAGTGGGATCTTACTCCATCAACGGGATTCTGGGAATTCCTCGCTCCAATGGTGAGAAAAGGAACCGTGAGGAAGgtaagtaagtgtgtgggctcttagaaccccctgactgttgcattcttatt Alignment from GeneWise TTCCCAGCACGGCCTCCCCTCCTGTTTCCAGCGCCTCTAACGACCCAGTGGGATCCTACTCCATCAACGGGATCCTGGGGATTCCTCGCTCCAACGGTGAGAAGAGGAAACGCGAGGAAG gccactacttttgtcctcaagtatctaacatttggtcctgtccccctcagTACCCAGCACTGCCTCCCCTCCTGTATCCAGTGCCTCTAATGATCCAGTGGGATCTTACTCCATCAACGGGATTCTGGGAATTCCTCGCTCCAATGGTGAGAAAAGGAACCGTGAGGAAGgtaagtaagtgtgtgggctcttagaaccccctgactgttgcattcttatt #### Pcgf5_ID7130_6 --> 0 - 0 Original Alignment GGTCTCATGAAGAAATTTATTCGCTGTTCTACACGAGTTACTGTAGGAACTATTAAAAAGTTTCTAAGTTTAAAACTAAAACTTCCAAGTTCTTATGAG catgatggaggatgacaactgttgaagctttcctttgttgatataaacagGGTCTCATGAAGAAATTTATTCGCTGTTCTACACAAGTTACTGTAGGAACTATTAAAAAGTTTCTTAGTTTAAAACTAAAACTTCCAAGTTCTTATGAAgttagtgattatatgtattgtgtaataacaatattggtgattctgaaatg Alignment from CESAR GGTCTCATGAAGAAATTTATTCGCTGTTCTACACGAGTTACTGTAGGAACTATTAAAAAGTTTCTAAGTTTAAAACTAAAACTTCCAAGTTCTTATGAG catgatggaggatgacaactgttgaagctttcctttgttgatataaacagGGTCTCATGAAGAAATTTATTCGCTGTTCTACACAAGTTACTGTAGGAACTATTAAAAAGTTTCTTAGTTTAAAACTAAAACTTCCAAGTTCTTATGAAgttagtgattatatgtattgtgtaataacaatattggtgattctgaaatg Alignment from Spaln_aa2Genome GGTCTCATGAAGAAATTTATTCGCTGTTCTACACGAGTTACTGTAGGAACTATTAAAAAGTTTCTAAGTTTAAAACTAAAACTTCCAAGTTCTTATGAG catgatggaggatgacaactgttgaagctttcctttgttgatataaacagGGTCTCATGAAGAAATTTATTCGCTGTTCTACACAAGTTACTGTAGGAACTATTAAAAAGTTTCTTAGTTTAAAACTAAAACTTCCAAGTTCTTATGAAgttagtgattatatgtattgtgtaataacaatattggtgattctgaaatg Alignment from Spaln_nt2Genome GGTCTCATGAAGAAATTTATTCGCTGTTCTACACGAGTTACTGTAGGAACTATTAAAAAGTTTCTAAGTTTAAAACTAAAACTTCCAAGTTCTTATGAG catgatggaggatgacaactgttgaagctttcctttgttgatataaacagGGTCTCATGAAGAAATTTATTCGCTGTTCTACACAAGTTACTGTAGGAACTATTAAAAAGTTTCTTAGTTTAAAACTAAAACTTCCAAGTTCTTATGAAgttagtgattatatgtattgtgtaataacaatattggtgattctgaaatg Alignment from Pairagon GGTCTCATGAAGAAATTTATTCGCTGTTCTACACGAGTTACTGTAGGAACTATTAAAAAGTTTCTAAGTTTAAAACTAAAACTTCCAAGTTCTTATGAG catgatggaggatgacaactgttgaagctttcctttgttgatataaacagGGTCTCATGAAGAAATTTATTCGCTGTTCTACACAAGTTACTGTAGGAACTATTAAAAAGTTTCTTAGTTTAAAACTAAAACTTCCAAGTTCTTATGAAgttagtgattatatgtattgtgtaataacaatattggtgattctgaaatg Alignment from Exonerate_protein2genome GGTCTCATGAAGAAATTTATTCGCTGTTCTACACGAGTTACTGTAGGAACTATTAAAAAGTTTCTAAGTTTAAAACTAAAACTTCCAAGTTCTTATGAG catgatggaggatgacaactgttgaagctttcctttgttgatataaacagGGTCTCATGAAGAAATTTATTCGCTGTTCTACACAAGTTACTGTAGGAACTATTAAAAAGTTTCTTAGTTTAAAACTAAAACTTCCAAGTTCTTATGAAgttagtgattatatgtattgtgtaataacaatattggtgattctgaaatg Alignment from Exonerate_coding2genome GGTCTCATGAAGAAATTTATTCGCTGTTCTACACGAGTTACTGTAGGAACTATTAAAAAGTTTCTAAGTTTAAAACTAAAACTTCCAAGTTCTTATGAG catgatggaggatgacaactgttgaagctttcctttgttgatataaacagGGTCTCATGAAGAAATTTATTCGCTGTTCTACACAAGTTACTGTAGGAACTATTAAAAAGTTTCTTAGTTTAAAACTAAAACTTCCAAGTTCTTATGAAgttagtgattatatgtattgtgtaataacaatattggtgattctgaaatg Alignment from GeneWise GGTCTCATGAAGAAATTTATTCGCTGTTCTACACGAGTTACTGTAGGAACTATTAAAAAGTTTCTAAGTTTAAAACTAAAACTTCCAAGTTCTTATGAG catgatggaggatgacaactgttgaagctttcctttgttgatataaacagGGTCTCATGAAGAAATTTATTCGCTGTTCTACACAAGTTACTGTAGGAACTATTAAAAAGTTTCTTAGTTTAAAACTAAAACTTCCAAGTTCTTATGAAgttagtgattatatgtattgtgtaataacaatattggtgattctgaaatg #### Pcgf5_ID7131_7 --> 0 - 0 Original Alignment TTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGACTAAGAGGAGAAAAT actgtgcaaacaagttactctatgtaaactctcttgttttctttatttagTTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGCCTAAGAGGAGAAAATgtgcgttcctctaatgtgatatctaggactttagggttttctatgtgttc Alignment from CESAR TTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGACTAAGAGGAGAAAAT actgtgcaaacaagttactctatgtaaactctcttgttttctttatttagTTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGCCTAAGAGGAGAAAATgtgcgttcctctaatgtgatatctaggactttagggttttctatgtgttc Alignment from Spaln_aa2Genome TTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGACTAAGAGGAGAAAAT actgtgcaaacaagttactctatgtaaactctcttgttttctttatttagTTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGCCTAAGAGGAGAAAATgtgcgttcctctaatgtgatatctaggactttagggttttctatgtgttc Alignment from Spaln_nt2Genome TTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGACTAAGAGGAGAAAAT actgtgcaaacaagttactctatgtaaactctcttgttttctttatttagTTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGCCTAAGAGGAGAAAATgtgcgttcctctaatgtgatatctaggactttagggttttctatgtgttc Alignment from Pairagon TTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGACTAAGAGGAGAAAAT actgtgcaaacaagttactctatgtaaactctcttgttttctttatttagTTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGCCTAAGAGGAGAAAATgtgcgttcctctaatgtgatatctaggactttagggttttctatgtgttc Alignment from Exonerate_protein2genome TTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGACTAAGAGGAGAAAAT actgtgcaaacaagttactctatgtaaactctcttgttttctttatttagTTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGCCTAAGAGGAGAAAATgtgcgttcctctaatgtgatatctaggactttagggttttctatgtgttc Alignment from Exonerate_coding2genome TTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGACTAAGAGGAGAAAAT actgtgcaaacaagttactctatgtaaactctcttgttttctttatttagTTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGCCTAAGAGGAGAAAATgtgcgttcctctaatgtgatatctaggactttagggttttctatgtgttc Alignment from GeneWise TTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGACTAAGAGGAGAAAAT actgtgcaaacaagttactctatgtaaactctcttgttttctttatttagTTGGATGTGCTGTGCAATGGTGAAATTATGGGAAAGGATCATACTATGGAATTCATCTATATGACAAGATGGCGCCTAAGAGGAGAAAATgtgcgttcctctaatgtgatatctaggactttagggttttctatgtgttc #### Pcnxl3_ID1161_32 --> 0 - 2 Original Alignment GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGag acctaagatgtattgatgtccctcctcacactacccctgccctgccccagGTAAACTGGGAATGTGTACAAGGTCTGTGGGCTGGGCAGCAACAAGAGCTAGTCTTTTTGTGCAATCGCAACCCTGAGCGGGGTAGTGTCCAGAATGCCCAGCAGGCAATCTGCAACAAGATTAATTCTTCC---GATCGACCACTAGGATATCCAACCTTTGTCTCACCTTTGACTACACCTTTGCCTGGGACACATCCCCAACTACAAGCACTGTGGGGTGGACCTGTTAGCTTGGGTGCCATTGCACGATGGCTTTTACATCACTGGGAAcagtaagttctaatagggctggctttggttcacatagtccccaaactgtaaa Alignment from CESAR GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGag acctaagatgtattgatgtccctcctcacactacccctgccctgccccagGTAAACTGGGAATGTGTACAAGGTCTGTGGGCTGGGCAGCAACAAGAGCTAGTCTTTTTGTGCAATCGCAACCCTGAGCGGGGTAGTGTCCAGAATGCCCAGCAGGCAATCTGCAACAAGATTAATTCTTCC---GATCGACCACTAGGATATCCAACCTTTGTCTCACCTTTGACTACACCTTTGCCTGGGACACATCCCCAACTACAAGCACTGTGGGGTGGACCTGTTAGCTTGGGTGCCATTGCACGATGGCTTTTACATCACTGGGAAcagtaagttctaatagggctggctttggttcacatagtccccaaactgtaaa Alignment from Spaln_aa2Genome GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG acctaagatgtattgatgtccctcctcacactacccctgccctgccccagGTAAACTGGGAATGTGTACAAGGTCTGTGGGCTGGGCAGCAACAAGAGCTAGTCTTTTTGTGCAATCGCAACCCTGAGCGGGGTAGTGTCCAGAATGCCCAGCAGGCAATCTGCAACAAGATTAATTCTTCC---GATCGACCACTAGGATATCCAACCTTTGTCTCACCTTTGACTACACCTTTGCCTGGGACACATCCCCAACTACAAGCACTGTGGGGTGGACCTGTTAGCTTGGGTGCCATTGCACGATGGCTTTTACATCACTGGGAACAgtaagttctaatagggctggctttggttcacatagtccccaaactgtaaa Alignment from Spaln_nt2Genome GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG acctaagatgtattgatgtccctcctcacactacccctgccctgccccagGTAAACTGGGAATGTGTACAAGGTCTGTGGGCTGGGCAGCAACAAGAGCTAGTCTTTTTGTGCAATCGCAACCCTGAGCGGGGTAGTGTCCAGAATGCCCAGCAGGCAATCTGCAACAAGATTAATTCTTC---CGATCGACCACTAGGATATCCAACCTTTGTCTCACCTTTGACTACACCTTTGCCTGGGACACATCCCCAACTACAAGCACTGTGGGGTGGACCTGTTAGCTTGGGTGCCATTGCACGATGGCTTTTACATCACTGGGAACAgtaagttctaatagggctggctttggttcacatagtccccaaactgtaaa Alignment from Pairagon GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG acctaagatgtattgatgtccctcctcacactacccctgccctgccccagGTAAACTGGGAATGTGTACAAGGTCTGTGGGCTGGGCAGCAACAAGAGCTAGTCTTTTTGTGCAATCGCAACCCTGAGCGGGGTAGTGTCCAGAATGCCCAGCAGGCAATCTGCAACAAGATTAATTCTTC---CGATCGACCACTAGGATATCCAACCTTTGTCTCACCTTTGACTACACCTTTGCCTGGGACACATCCCCAACTACAAGCACTGTGGGGTGGACCTGTTAGCTTGGGTGCCATTGCACGATGGCTTTTACATCACTGGGAACAgtaagttctaatagggctggctttggttcacatagtccccaaactgtaaa Alignment from Exonerate_protein2genome GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG acctaagatgtattgatgtccctcctcacactacccctgccctgccccagGTAAACTGGGAATGTGTACAAGGTCTGTGGGCTGGGCAGCAACAAGAGCTAGTCTTTTTGTGCAATCGCAACCCTGAGCGGGGTAGTGTCCAGAATGCCCAGCAGGCAATCTGCAACAAGATTAATTCTTCC---GATCGACCACTAGGATATCCAACCTTTGTCTCACCTTTGACTACACCTTTGCCTGGGACACATCCCCAACTACAAGCACTGTGGGGTGGACCTGTTAGCTTGGGTGCCATTGCACGATGGCTTTTACATCACTGGGAACAgtaagttctaatagggctggctttggttcacatagtccccaaactgtaaa Alignment from Exonerate_coding2genome acctaagatgtattgatgtccctcctcacactacccctgccctgccccaggtaaactgggaatgtgtacaaggtctgtgggctgggcagcaacaagagctagtctttttgtgcaatcgcaaccctgagcggggtagtgtccagaatgcccagcaggcaatctgcaacaagattaattcttccgatcgaccactaggatatccaacctttgtctcacctttgactacacctttgcctgggacacatccccaactacaagcactgtggggtggacctgttagcttgggtgccattgcacgatggcttttacatcactgggaacagtaagttctaatagggctggctttggttcacatagtccccaaactgtaaa Alignment from GeneWise GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG acctaagatgtattgatgtccctcctcacactacccctgccctgccccagGTAAACTGGGAATGTGTACAAGGTCTGTGGGCTGGGCAGCAACAAGAGCTAGTCTTTTTGTGCAATCGCAACCCTGAGCGGGGTAGTGTCCAGAATGCCCAGCAGGCAATCTGCAACAAGATTAATTCTTCC---GATCGACCACTAGGATATCCAACCTTTGTCTCACCTTTGACTACACCTTTGCCTGGGACACATCCCCAACTACAAGCACTGTGGGGTGGACCTGTTAGCTTGGGTGCCATTGCACGATGGCTTTTACATCACTGGGAACAgtaagttctaatagggctggctttggttcacatagtccccaaactgtaaa #### Pcnxl3_ID1175_18 --> 1 - 0 Original Alignment gTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG agtgaaagcatttatggtcaaggtgtaactctctctgtcttttcctgcaggTCTCTAGTTCAGAGCAAACTTTTCCCAGAGCTAGAGGAGCGCAGCCTAGTGACAGCCCAGGTGGAACCCCCAGACCCACTGCCAGATAAAATGCATCAGTCAGTGgtaaagaggtgacagtgagtgccgacgccaatgcagctaaggaaggttta Alignment from CESAR gTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG agtgaaagcatttatggtcaaggtgtaactctctctgtcttttcctgcaggTCTCTAGTTCAGAGCAAACTTTTCCCAGAGCTAGAGGAGCGCAGCCTAGTGACAGCCCAGGTGGAACCCCCAGACCCACTGCCAGATAAAATGCATCAGTCAGTGgtaaagaggtgacagtgagtgccgacgccaatgcagctaaggaaggttta Alignment from Spaln_aa2Genome GTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG agtgaaagcatttatggtcaaggtgtaactctctctgtcttttcctgcagGTCTCTAGTTCAGAGCAAACTTTTCCCAGAGCTAGAGGAGCGCAGCCTAGTGACAGCCCAGGTGGAACCCCCAGACCCACTGCCAGATAAAATGCATCAGTCAGTGgtaaagaggtgacagtgagtgccgacgccaatgcagctaaggaaggttta Alignment from Spaln_nt2Genome GTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG agtgaaagcatttatggtcaaggtgtaactctctctgtcttttcctgcagGTCTCTAGTTCAGAGCAAACTTTTCCCAGAGCTAGAGGAGCGCAGCCTAGTGACAGCCCAGGTGGAACCCCCAGACCCACTGCCAGATAAAATGCATCAGTCAGTGgtaaagaggtgacagtgagtgccgacgccaatgcagctaaggaaggttta Alignment from Pairagon GTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG agtgaaagcatttatggtcaaggtgtaactctctctgtcttttcctgcagGTCTCTAGTTCAGAGCAAACTTTTCCCAGAGCTAGAGGAGCGCAGCCTAGTGACAGCCCAGGTGGAACCCCCAGACCCACTGCCAGATAAAATGCATCAGTCAGTGgtaaagaggtgacagtgagtgccgacgccaatgcagctaaggaaggttta Alignment from Exonerate_protein2genome GTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG agtgaaagcatttatggtcaaggtgtaactctctctgtcttttcctgcagGTCTCTAGTTCAGAGCAAACTTTTCCCAGAGCTAGAGGAGCGCAGCCTAGTGACAGCCCAGGTGGAACCCCCAGACCCACTGCCAGATAAAATGCATCAGTCAGTGgtaaagaggtgacagtgagtgccgacgccaatgcagctaaggaaggttta Alignment from Exonerate_coding2genome GTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTGCGGGAAGTCTTGCA agtgaaagcatttatggtcaaggtgtaactctctctgtcttttcctgcagGTCTCTAGTTCAGAGCAAACTTTTCCCAGAGCTAGAGGAGCGCAGCCTAGTGACAGCCCAGGTGGAACCCCCAGACCCACTGCCAGATAAAATGCATCAGTCAGTGGTAAAGAGGTGACAgtgagtgccgacgccaatgcagctaaggaaggttta Alignment from GeneWise GTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG agtgaaagcatttatggtcaaggtgtaactctctctgtcttttcctgcagGTCTCTAGTTCAGAGCAAACTTTTCCCAGAGCTAGAGGAGCGCAGCCTAGTGACAGCCCAGGTGGAACCCCCAGACCCACTGCCAGATAAAATGCATCAGTCAGTGgtaaagaggtgacagtgagtgccgacgccaatgcagctaaggaaggttta #### Pcnxl3_ID1178_15 --> 2 - 1 Original Alignment GTGGCCACTg tgTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAg GTGGCAACTggtaacccacctcaagataccaagcacttgtgcatacccagtaTTCACCTTATGCTTTCCCTTTGTCTTCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTGACGTACCTCTCGGAACAAATTGATATGCATGGTTTTGGAGGCACAggtgaagtgtgctcagaaaggtctatgccaggaatattgcatctaccaaat Alignment from CESAR GTGGCCACTg tgTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAg GTGGCAACTggtgggtcacctcaagataccaagcacttgtgcatacccagtaTTCACCTTATGCTTTCCCTTTGTCTTCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTGACGTACCTCTCGGAACAAATTGATATGCATGGTTTTGGAGGCACAggtgaagtgtgctcagaaaggtctatgccaggaatattgcatctaccaaat Alignment from Spaln_aa2Genome GTGGCCACTG TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG GTGGCAACTGgtaacccacctcaagataccaagcacttgtgcatacccagTATTCACCTTATGCTTTCCCTTTGTCTTCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTGACGTACCTCTCGGAACAAATTGATATGCATGGTTTTGGAGGCACAGgtgaagtgtgctcagaaaggtctatgccaggaatattgcatctaccaaat Alignment from Spaln_nt2Genome GTGGCCACTG TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG GTGGCAACTGgtaacccacctcaagataccaagcacttgtgcatacccagTATTCACCTTATGCTTTCCCTTTGTCTTCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTGACGTACCTCTCGGAACAAATTGATATGCATGGTTTTGGAGGCACAGgtgaagtgtgctcagaaaggtctatgccaggaatattgcatctaccaaat Alignment from Pairagon GTGGCCACTG TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG GTGGCAACTGgtaacccacctcaagataccaagcacttgtgcatacccagTATTCACCTTATGCTTTCCCTTTGTCTTCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTGACGTACCTCTCGGAACAAATTGATATGCATGGTTTTGGAGGCACAGgtgaagtgtgctcagaaaggtctatgccaggaatattgcatctaccaaat Alignment from Exonerate_protein2genome GTGGCCACTG TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG GTGGCAACTGgtaacccacctcaagataccaagcacttgtgcatacccagTATTCACCTTATGCTTTCCCTTTGTCTTCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTGACGTACCTCTCGGAACAAATTGATATGCATGGTTTTGGAGGCACAGgtgaagtgtgctcagaaaggtctatgccaggaatattgcatctaccaaat Alignment from Exonerate_coding2genome GTGGCCACTG TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG GTGGCAACTGgtaacccacctcaagataccaagcacttgtgcatacccagTATTCACCTTATGCTTTCCCTTTGTCTTCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTGACGTACCTCTCGGAACAAATTGATATGCATGGTTTTGGAGGCACAGgtgaagtgtgctcagaaaggtctatgccaggaatattgcatctaccaaat Alignment from GeneWise GTGGCCACTG TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG GTGGCAACTGgtaacccacctcaagataccaagcacttgtgcatacccagTATTCACCTTATGCTTTCCCTTTGTCTTCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTGACGTACCTCTCGGAACAAATTGATATGCATGGTTTTGGAGGCACAGgtgaagtgtgctcagaaaggtctatgccaggaatattgcatctaccaaat #### Pcnxl3_ID1179_14 --> 0 - 1 Original Alignment GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTg tgTTCACCTT caataacttatagttgcttggcctatgattgctccaaattgcgtccccagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCACTTGGGACAACTCAACCCTTCCCACCTGTCTCTCTGTATGGTCTAACCCTCTTTTCTGCCTCGTTCTTCTTTTGTGCACGAGATGTGGCAACTggtgggtcacctcaagatataatgcacctgtttggtttcagtaTTCACCTT Alignment from CESAR GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTg tgTTCACCTT caataacttatagttgcttggcctatgattgctccaaattgcgtccccagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCACTTGGGACAACTCAACCCTTCCCACCTGTCTCTCTGTATGGTCTAACCCTCTTTTCTGCCTCGTTCTTCTTTTGTGCACGAGATGTGGCAACTggtgggtcacctcaagataccaagcacttgtgcatacccagtaTTCACCTT Alignment from Spaln_aa2Genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG TGTTCACCTT caataacttatagttgcttggcctatgattgctccaaattgcgtccccagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCACTTGGGACAACTCAACCCTTCCCACCTGTCTCTCTGTATGGTCTAACCCTCTTTTCTGCCTCGTTCTTCTTTTGTGCACGAGATGTGGCAACTGgtgggtcacctcaagatataatgcacctgtttggtttcagTATTCACCTT Alignment from Spaln_nt2Genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG TGTTCACCTT caataacttatagttgcttggcctatgattgctccaaattgcgtccccagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCACTTGGGACAACTCAACCCTTCCCACCTGTCTCTCTGTATGGTCTAACCCTCTTTTCTGCCTCGTTCTTCTTTTGTGCACGAGATGTGGCAACTGgtgggtcacctcaagatataatgcacctgtttggtttcagTATTCACCTT Alignment from Pairagon GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG TGTTCACCTT caataacttatagttgcttggcctatgattgctccaaattgcgtccccagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCACTTGGGACAACTCAACCCTTCCCACCTGTCTCTCTGTATGGTCTAACCCTCTTTTCTGCCTCGTTCTTCTTTTGTGCACGAGATGTGGCAACTGgtgggtcacctcaagatataatgcacctgtttggtttcagTATTCACCTT Alignment from Exonerate_protein2genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG TGTTCACCTT caataacttatagttgcttggcctatgattgctccaaattgcgtccccagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCACTTGGGACAACTCAACCCTTCCCACCTGTCTCTCTGTATGGTCTAACCCTCTTTTCTGCCTCGTTCTTCTTTTGTGCACGAGATGTGGCAACTGgtgggtcacctcaagatataatgcacctgtttggtttcagTATTCACCTT Alignment from Exonerate_coding2genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG TGTTCACCTT caataacttatagttgcttggcctatgattgctccaaattgcgtccccagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCACTTGGGACAACTCAACCCTTCCCACCTGTCTCTCTGTATGGTCTAACCCTCTTTTCTGCCTCGTTCTTCTTTTGTGCACGAGATGTGGCAACTGgtgggtcacctcaagatataatgcacctgtttggtttcagTATTCACCTT Alignment from GeneWise GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG TGTTCACCTT caataacttatagttgcttggcctatgattgctccaaattgcgtccccagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTTTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCACTTGGGACAACTCAACCCTTCCCACCTGTCTCTCTGTATGGTCTAACCCTCTTTTCTGCCTCGTTCTTCTTTTGTGCACGAGATGTGGCAACTGgtgggtcacctcaagatataatgcacctgtttggtttcagTATTCACCTT #### Pcnxl3_ID1180_13 --> 0 - 0 Original Alignment AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC atgggcctcaatactataccccaccaactgaaaagtgttgatttttgcagAGCATTCAACCTGATGCAGCATCACCCATGCATgtaaagatgtgaagaaagtgctgctgccaactaacaggtgatctagtatg Alignment from CESAR AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC atgggcctcaatactataccccaccaactgaaaagtgttgatttttgcagAGCATTCAACCTGATGCAGCATCACCCATGCATgtaaagatgtgaagaaagtgctgctgccaactaacaggtgatctagtatg Alignment from Spaln_aa2Genome AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC atgggcctcaatactataccccaccaactgaaaagtgttgatttttgcagAGCATTCAACCTGATGCAGCATCACCCATGCATgtaaagatgtgaagaaagtgctgctgccaactaacaggtgatctagtatg Alignment from Spaln_nt2Genome AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC atgggcctcaatactataccccaccaactgaaaagtgttgatttttgcagAGCATTCAACCTGATGCAGCATCACCCATGCATgtaaagatgtgaagaaagtgctgctgccaactaacaggtgatctagtatg Alignment from Pairagon AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC atgggcctcaatactataccccaccaactgaaaagtgttgatttttgcagAGCATTCAACCTGATGCAGCATCACCCATGCATgtaaagatgtgaagaaagtgctgctgccaactaacaggtgatctagtatg Alignment from Exonerate_protein2genome AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC atgggcctcaatactataccccaccaactgaaaagtgttgatttttgcagAGCATTCAACCTGATGCAGCATCACCCATGCATgtaaagatgtgaagaaagtgctgctgccaactaacaggtgatctagtatg Alignment from Exonerate_coding2genome AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC atgggcctcaatactataccccaccaactgaaaagtgttgatttttgcagAGCATTCAACCTGATGCAGCATCACCCATGCATgtaaagatgtgaagaaagtgctgctgccaactaacaggtgatctagtatg Alignment from GeneWise AGCGTGCAGCCTGATGCAGCATCCCCAATGCAC atgggcctcaatactataccccaccaactgaaaagtgttgatttttgcagAGCATTCAACCTGATGCAGCATCACCCATGCATgtaaagatgtgaagaaagtgctgctgccaactaacaggtgatctagtatg #### Pcnxl3_ID1183_10 --> 1 - 0 Original Alignment gGACCGTCACTCACATTCCTCCAGCTTCCACTCAGCTGATGTGCCTGAAGCCACGGGAGGCTTGAACCTGTTGCAGCCAAGGCCAGTAGTTCTTCAGGGTATGCAGGTGCGCAGGGTGCCC------------------CTGGAAATCCCAGAG ctcttacattattaatggcgttctcggccagttgcttttcccttgtgcaggGACCATCACTCTCATTCCTCCAGCATTTACTCAGCTGATGTACCTGTTGCTACAGGGGGCTTGAATCTGTTGCAACCAAGGCCATTAGTCTTTGAAGGCATGCAAGTACATAGGGTGCCTCTTGGGGTCCCCCTGGGGATGGGGATTCCAGATgtcagtaacagcttttgggtcaatataaaatgacctgttgttcattgagg Alignment from CESAR gGACCGTCACTCACATTCCTCCAGCTTCCACTCAGCTGATGTGCCTGAAGCCACGGGAGGCTTGAACCTGTTGCAGCCAAGGCCAGTAGTTCTTCAGGGTATGCAGGTGCGCAGGGTGCCCCTGGAA------------------ATCCCAGAG ctcttacattattaatggcgttctcggccagttgcttttcccttgtgcaggGACCATCACTCTCATTCCTCCAGCATTTACTCAGCTGATGTACCTGTTGCTACAGGGGGCTTGAATCTGTTGCAACCAAGGCCATTAGTCTTTGAAGGCATGCAAGTACATAGGGTGCCTCTTGGGGTCCCCCTGGGGATGGGGATTCCAGATgtcagtaacagcttttgggtcaatataaaatgacctgttgttcattgagg Alignment from Spaln_aa2Genome GGACCGTCACTCACATTCCTCCAGCTTCCACTCAGCTGATGTGCCTGAAGCCACGGGAGGCTTGAACCTGTTGCAGCCAAGGCCAGTAGTTCTTCAGGGTATGCAGGTGCGCAGGGTGCCCCTG------------------GAAATCCCAGAG ctcttacattattaatggcgttctcggccagttgcttttcccttgtgcagGGACCATCACTCTCATTCCTCCAGCATTTACTCAGCTGATGTACCTGTTGCTACAGGGGGCTTGAATCTGTTGCAACCAAGGCCATTAGTCTTTGAAGGCATGCAAGTACATAGGGTGCCTCTTGGGGTCCCCCTGGGGATGGGGATTCCAGATgtcagtaacagcttttgggtcaatataaaatgacctgttgttcattgagg Alignment from Spaln_nt2Genome GGACCGTCACTCACATTCCTCCAGCTTCCACTCAGCTGATGTGCCTGAAGCCACGGGAGGCTTGAACCTGTTGCAGCCAAGGCCAGTAGTTCTTCAGGGTATGCAGGTGCGCAGGGTGCCCCTGGAA ctcttacattattaatggcgttctcggccagttgcttttcccttgtgcagGGACCATCACTCTCATTCCTCCAGCATTTACTCAGCTGATGTACCTGTTGCTACAGGGGGCTTGAATCTGTTGCAACCAAGGCCATTAGTCTTTGAAGGCATGCAAGTACATAGGGTGCCTCTTGGGgtccccctggggatggggattccagatgtcagtaacagcttttgggtcaatataaaatgacctgttgttcattgagg Alignment from Pairagon GGACCGTCACTCACATTCCTCCAGCTTCCACTCAGCTGATGTGCCTGAAGCCACGGGAGGCTTGAACCTGTTGCAGCCAAGGCCAGTAGTTCTTCAGGGTATGCAGGTGCGCAGGGTGCCCC------------------TGGAAATCCCAGAG ctcttacattattaatggcgttctcggccagttgcttttcccttgtgcagGGACCATCACTCTCATTCCTCCAGCATTTACTCAGCTGATGTACCTGTTGCTACAGGGGGCTTGAATCTGTTGCAACCAAGGCCATTAGTCTTTGAAGGCATGCAAGTACATAGGGTGCCTCTTGGGGTCCCCCTGGGGATGGGGATTCCAGATgtcagtaacagcttttgggtcaatataaaatgacctgttgttcattgagg Alignment from Exonerate_protein2genome GGACCGTCACTCACATTCCTCCAGCTTCCACTCAGCTGATGTGCCTGAAGCCACGGGAGGCTTGAACCTGTTGCAGCCAAGGCCAGTAGTTCTTCAGGGTATGCAGGTGCGCAGGGTGCCCCTGGAAATCCCAGAG ctcttacattattaatggcgttctcggccagttgcttttcccttgtgcagGGACCATCACTCTCATTCCTCCAGCATTTACTCAGCTGATGTACCTGTTGCTACAGGGGGCTTGAATCTGTTGCAACCAAGGCCATTAGTCTTTGAAGGCATGCAAGTACATAGGGTGCCTCTTGGGGTCCCCCTGgggatggggattccagatgtcagtaacagcttttgggtcaatataaaatgacctgttgttcattgagg Alignment from Exonerate_coding2genome GGACCGTCACTCACATTCCTCCAGCTTCCACTCAGCTGATGTGCCTGAAGCCACGGGAGGCTTGAACCTGTTGCAGCCAAGGCCAGTAGTTCTTCAGGGTATGCAGGTGCGCAGGGTGCCCCTGGAAATCCCAGAG ctcttacattattaatggcgttctcggccagttgcttttcccttgtgcagGGACCATCACTCTCATTCCTCCAGCATTTACTCAGCTGATGTACCTGTTGCTACAGGGGGCTTGAATCTGTTGCAACCAAGGCCATTAGTCTTTGAAGGCATGCAAGTACATAGGGTGCCTCTTGGGGTCCCCCTGgggatggggattccagatgtcagtaacagcttttgggtcaatataaaatgacctgttgttcattgagg Alignment from GeneWise GGACCGTCACTCACATTCCTCCAGCTTCCACTCAGCTGATGTGCCTGAAGCCACGGGAGGCTTGAACCTGTTGCAGCCAAGGCCAGTAGTTCTTCAGGGTATGCAGGTGCGCAGGGTGCCCCTG------------------GAAATCCCAGAG ctcttacattattaatggcgttctcggccagttgcttttcccttgtgcagGGACCATCACTCTCATTCCTCCAGCATTTACTCAGCTGATGTACCTGTTGCTACAGGGGGCTTGAATCTGTTGCAACCAAGGCCATTAGTCTTTGAAGGCATGCAAGTACATAGGGTGCCTCTTGGGGTCCCCCTGGGGATGGGGATTCCAGATgtcagtaacagcttttgggtcaatataaaatgacctgttgttcattgagg #### Pcnxl3_ID1184_9 --> 2 - 2 Original Alignment gtGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCAGCCAATGGAGCCtg ccttttagcttttcttgtttcttgtgtaaatatccattgtttccttttaggtGTACGACAGTCATATACCTTTGGTCTATCCGGAGGTGGCTATGAGAATCCAGTGAGTCAGCCAGGTGAGCAGGCTGCCAATGGAGCTtggtgagtacccaaacagatagggctagatttgtaatgaagattgttgcccc Alignment from CESAR gtGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCAGCCAATGGAGCCtg ccttttagcttttcttgtttcttgtgtaaatatccattgtttccttttaggtGTACGACAGTCATATACCTTTGGTCTATCCGGAGGTGGCTATGAGAATCCAGTGAGTCAGCCAGGTGAGCAGGCTGCCAATGGAGCTtggtgagtacccaaacagatagggctagatttgtaatgaagattgttgcccc Alignment from Spaln_aa2Genome GTGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCAGCCAATGGAGCCTG ccttttagcttttcttgtttcttgtgtaaatatccattgtttccttttagGTGTACGACAGTCATATACCTTTGGTCTATCCGGAGGTGGCTATGAGAATCCAGTGAGTCAGCCAGGTGAGCAGGCTGCCAATGGAGCTTGgtgagtacccaaacagatagggctagatttgtaatgaagattgttgcccc Alignment from Spaln_nt2Genome GTGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCAGCCAATGGAGCCTG ccttttagcttttcttgtttcttgtgtaaatatccattgtttccttttagGTGTACGACAGTCATATACCTTTGGTCTATCCGGAGGTGGCTATGAGAATCCAGTGAGTCAGCCAGGTGAGCAGGCTGCCAATGGAGCTTGgtgagtacccaaacagatagggctagatttgtaatgaagattgttgcccc Alignment from Pairagon GTGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCAGCCAATGGAGCCTG ccttttagcttttcttgtttcttgtgtaaatatccattgtttccttttagGTGTACGACAGTCATATACCTTTGGTCTATCCGGAGGTGGCTATGAGAATCCAGTGAGTCAGCCAGGTGAGCAGGCTGCCAATGGAGCTTGgtgagtacccaaacagatagggctagatttgtaatgaagattgttgcccc Alignment from Exonerate_protein2genome GTGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCAGCCAATGGAGCCTG ccttttagcttttcttgtttcttgtgtaaatatccattgtttccttttagGTGTACGACAGTCATATACCTTTGGTCTATCCGGAGGTGGCTATGAGAATCCAGTGAGTCAGCCAGGTGAGCAGGCTGCCAATGGAGCTTGgtgagtacccaaacagatagggctagatttgtaatgaagattgttgcccc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGTACGACGGTCGTATACCTTTGGCCTAGCTGGAGGTGGCTACGAGAACCCTGTGAGTCAGCCAGGCGAGCAGGCAGCCAATGGAGCCTG ccttttagcttttcttgtttcttgtgtaaatatccattgtttccttttagGTGTACGACAGTCATATACCTTTGGTCTATCCGGAGGTGGCTATGAGAATCCAGTGAGTCAGCCAGGTGAGCAGGCTGCCAATGGAGCTTGgtgagtacccaaacagatagggctagatttgtaatgaagattgttgcccc #### Pcsk5_ID4234_33 --> 2 - 1 Original Alignment atTGCCCCGAGTCCTGCCTGATCTGCTCATCAGCTTGGACCTGCCTGGCCTGTCGGGAAGGCTTCACAGTAGTGCATGATGTCTGCACGGCACCCAAGGAGTGTGCAGCCGTCGAGTACTGGGATGAGGGCTCCCACAGGTGCCAGCCGTGTCACAAGAAATGCTCCCGCTGCTCAGGGCCTTCTGAGGACCAGTGCTATACCTGTCCCAGAGAGACTTTTCTTCTCa tagttccacacctattgcacaatctgatcatcctggttgcctgctcctagacTGCCCAGGATCCAGCCTAATTTGTTCATCAACTTGGACTTGTCTCTCCTGTCGAGAAGGGTTCATAGTGGTGCATGATGTCTGCACTGCACTTAGAGAATGTGCAGCTGTTGAGTATTGGGATGAGGGTTCTCAAAGATGTCAACCATGCCATAAGAAGTGTTCTCAGTGCTCAGGACCTTCAGAGGACCAGTGCTATACTTGTCCCAGACAGTCTTTTCTACTAagtgcggaatcgtcacagggggtgaatgattatcccgctctggttgcaaag Alignment from CESAR atTGCCCCGAGTCCTGCCTGATCTGCTCATCAGCTTGGACCTGCCTGGCCTGTCGGGAAGGCTTCACAGTAGTGCATGATGTCTGCACGGCACCCAAGGAGTGTGCAGCCGTCGAGTACTGGGATGAGGGCTCCCACAGGTGCCAGCCGTGTCACAAGAAATGCTCCCGCTGCTCAGGGCCTTCTGAGGACCAGTGCTATACCTGTCCCAGAGAGACTTTTCTTCTCa tagttccacacctattgcacaatctgatcatcctggttgcctgctcctagacTGCCCAGGATCCAGCCTAATTTGTTCATCAACTTGGACTTGTCTCTCCTGTCGAGAAGGGTTCATAGTGGTGCATGATGTCTGCACTGCACTTAGAGAATGTGCAGCTGTTGAGTATTGGGATGAGGGTTCTCAAAGATGTCAACCATGCCATAAGAAGTGTTCTCAGTGCTCAGGACCTTCAGAGGACCAGTGCTATACTTGTCCCAGACAGTCTTTTCTACTAagtgcggaatcgtcacagggggtgaatgattatcccgctctggttgcaaag Alignment from Spaln_aa2Genome ATTGCCCCGAGTCCTGCCTGATCTGCTCATCAGCTTGGACCTGCCTGGCCTGTCGGGAAGGCTTCACAGTAGTGCATGATGTCTGCACGGCACCCAAGGAGTGTGCAGCCGTCGAGTACTGGGATGAGGGCTCCCACAGGTGCCAGCCGTGTCACAAGAAATGCTCCCGCTGCTCAGGGCCTTCTGAGGACCAGTGCTATACCTGTCCCAGAGAGACTTTTCTTCTCA tagttccacacctattgcacaatctgatcatcctggttgcctgctcctagACTGCCCAGGATCCAGCCTAATTTGTTCATCAACTTGGACTTGTCTCTCCTGTCGAGAAGGGTTCATAGTGGTGCATGATGTCTGCACTGCACTTAGAGAATGTGCAGCTGTTGAGTATTGGGATGAGGGTTCTCAAAGATGTCAACCATGCCATAAGAAGTGTTCTCAGTGCTCAGGACCTTCAGAGGACCAGTGCTATACTTGTCCCAGACAGTCTTTTCTACTAAgtgcggaatcgtcacagggggtgaatgattatcccgctctggttgcaaag Alignment from Spaln_nt2Genome ATTGCCCCGAGTCCTGCCTGATCTGCTCATCAGCTTGGACCTGCCTGGCCTGTCGGGAAGGCTTCACAGTAGTGCATGATGTCTGCACGGCACCCAAGGAGTGTGCAGCCGTCGAGTACTGGGATGAGGGCTCCCACAGGTGCCAGCCGTGTCACAAGAAATGCTCCCGCTGCTCAGGGCCTTCTGAGGACCAGTGCTATACCTGTCCCAGAGAGACTTTTCTTCTCA tagttccacacctattgcacaatctgatcatcctggttgcctgctcctagACTGCCCAGGATCCAGCCTAATTTGTTCATCAACTTGGACTTGTCTCTCCTGTCGAGAAGGGTTCATAGTGGTGCATGATGTCTGCACTGCACTTAGAGAATGTGCAGCTGTTGAGTATTGGGATGAGGGTTCTCAAAGATGTCAACCATGCCATAAGAAGTGTTCTCAGTGCTCAGGACCTTCAGAGGACCAGTGCTATACTTGTCCCAGACAGTCTTTTCTACTAAgtgcggaatcgtcacagggggtgaatgattatcccgctctggttgcaaag Alignment from Pairagon ATTGCCCCGAGTCCTGCCTGATCTGCTCATCAGCTTGGACCTGCCTGGCCTGTCGGGAAGGCTTCACAGTAGTGCATGATGTCTGCACGGCACCCAAGGAGTGTGCAGCCGTCGAGTACTGGGATGAGGGCTCCCACAGGTGCCAGCCGTGTCACAAGAAATGCTCCCGCTGCTCAGGGCCTTCTGAGGACCAGTGCTATACCTGTCCCAGAGAGACTTTTCTTCTCA tagttccacacctattgcacaatctgatcatcctggttgcctgctcctagACTGCCCAGGATCCAGCCTAATTTGTTCATCAACTTGGACTTGTCTCTCCTGTCGAGAAGGGTTCATAGTGGTGCATGATGTCTGCACTGCACTTAGAGAATGTGCAGCTGTTGAGTATTGGGATGAGGGTTCTCAAAGATGTCAACCATGCCATAAGAAGTGTTCTCAGTGCTCAGGACCTTCAGAGGACCAGTGCTATACTTGTCCCAGACAGTCTTTTCTACTAAgtgcggaatcgtcacagggggtgaatgattatcccgctctggttgcaaag Alignment from Exonerate_protein2genome ATTGCCCCGAGTCCTGCCTGATCTGCTCATCAGCTTGGACCTGCCTGGCCTGTCGGGAAGGCTTCACAGTAGTGCATGATGTCTGCACGGCACCCAAGGAGTGTGCAGCCGTCGAGTACTGGGATGAGGGCTCCCACAGGTGCCAGCCGTGTCACAAGAAATGCTCCCGCTGCTCAGGGCCTTCTGAGGACCAGTGCTATACCTGTCCCAGAGAGACTTTTCTTCTCA tagttccacacctattgcacaatctgatcatcctggttgcctgctcctagACTGCCCAGGATCCAGCCTAATTTGTTCATCAACTTGGACTTGTCTCTCCTGTCGAGAAGGGTTCATAGTGGTGCATGATGTCTGCACTGCACTTAGAGAATGTGCAGCTGTTGAGTATTGGGATGAGGGTTCTCAAAGATGTCAACCATGCCATAAGAAGTGTTCTCAGTGCTCAGGACCTTCAGAGGACCAGTGCTATACTTGTCCCAGACAGTCTTTTCTACTAAgtgcggaatcgtcacagggggtgaatgattatcccgctctggttgcaaag Alignment from Exonerate_coding2genome ATTGCCCCGAGTCCTGCCTGATCTGCTCATCAGCTTGGACCTGCCTGGCCTGTCGGGAAGGCTTCACAGTAGTGCATGATGTCTGCACGGCACCCAAGGAGTGTGCAGCCGTCGAGTACTGGGATGAGGGCTCCCACAGGTGCCAGCCGTGTCACAAGAAATGCTCCCGCTGCTCAGGGCCTTCTGAGGACCAGTGCTATACCTGTCCCAGAGAGACTTTTCTTCTCA tagttccacacctattgcacaatctgatcatcctggttgcctgctcctagACTGCCCAGGATCCAGCCTAATTTGTTCATCAACTTGGACTTGTCTCTCCTGTCGAGAAGGGTTCATAGTGGTGCATGATGTCTGCACTGCACTTAGAGAATGTGCAGCTGTTGAGTATTGGGATGAGGGTTCTCAAAGATGTCAACCATGCCATAAGAAGTGTTCTCAGTGCTCAGGACCTTCAGAGGACCAGTGCTATACTTGTCCCAGACAGTCTTTTCTACTAAgtgcggaatcgtcacagggggtgaatgattatcccgctctggttgcaaag Alignment from GeneWise ATTGCCCCGAGTCCTGCCTGATCTGCTCATCAGCTTGGACCTGCCTGGCCTGTCGGGAAGGCTTCACAGTAGTGCATGATGTCTGCACGGCACCCAAGGAGTGTGCAGCCGTCGAGTACTGGGATGAGGGCTCCCACAGGTGCCAGCCGTGTCACAAGAAATGCTCCCGCTGCTCAGGGCCTTCTGAGGACCAGTGCTATACCTGTCCCAGAGAGACTTTTCTTCTCA tagttccacacctattgcacaatctgatcatcctggttgcctgctcctagACTGCCCAGGATCCAGCCTAATTTGTTCATCAACTTGGACTTGTCTCTCCTGTCGAGAAGGGTTCATAGTGGTGCATGATGTCTGCACTGCACTTAGAGAATGTGCAGCTGTTGAGTATTGGGATGAGGGTTCTCAAAGATGTCAACCATGCCATAAGAAGTGTTCTCAGTGCTCAGGACCTTCAGAGGACCAGTGCTATACTTGTCCCAGACAGTCTTTTCTACTAAgtgcggaatcgtcacagggggtgaatgattatcccgctctggttgcaaag #### Pcsk5_ID4236_31 --> 1 - 1 Original Alignment gGGCTTTTATGCAAAAGATGGTGTTTGTGAACACTGTAGTTCCCCTTGCAAAACATGCGAAGGAAATGCCACCAGCTGTAACTCTTGTGAAGGAGACTTCGTCCTAGACCATGGGGTGTGCTGGAAAACTTGCCCTGAAAAGCACGTGGCCGTGGAAGGAGTCTGCAAGCACTGTCCAGAGAGGTGCCAGGACTGCATCCACGAGAAAACTTGCAAAg ctttcatcttaagaaaatgtaatatggcgtgggctttttatctgtttcaggGGCTTTTATGCAAAAGATGGTGTTTGTGAACACTGTAGTTCCCCTTGCAAAACGTGCGAGGGAAACACCGCAAGCTGTAACTCTTGTGAAGGAGACTTTGTCCTAGATCATGGAGTGTGCTGGAAAACATGCCCTGAAAAGCATGTTGCTGTGGAAGGGGTCTGCAAGCACTGTCCTGAGAGGTGTCATGACTGTATCCATGAGAAAACCTGTAAAggtaagttgtgacacccaggcccaaaaaaaggcataaatcagtaaaggaga Alignment from CESAR gGGCTTTTATGCAAAAGATGGTGTTTGTGAACACTGTAGTTCCCCTTGCAAAACATGCGAAGGAAATGCCACCAGCTGTAACTCTTGTGAAGGAGACTTCGTCCTAGACCATGGGGTGTGCTGGAAAACTTGCCCTGAAAAGCACGTGGCCGTGGAAGGAGTCTGCAAGCACTGTCCAGAGAGGTGCCAGGACTGCATCCACGAGAAAACTTGCAAAg ctttcatcttaagaaaatgtaatatggcgtgggctttttatctgtttcaggGGCTTTTATGCAAAAGATGGTGTTTGTGAACACTGTAGTTCCCCTTGCAAAACGTGCGAGGGAAACACCGCAAGCTGTAACTCTTGTGAAGGAGACTTTGTCCTAGATCATGGAGTGTGCTGGAAAACATGCCCTGAAAAGCATGTTGCTGTGGAAGGGGTCTGCAAGCACTGTCCTGAGAGGTGTCATGACTGTATCCATGAGAAAACCTGTAAAggtaagttgtgacacccaggcccaaaaaaaggcataaatcagtaaaggaga Alignment from Spaln_aa2Genome GGGCTTTTATGCAAAAGATGGTGTTTGTGAACACTGTAGTTCCCCTTGCAAAACATGCGAAGGAAATGCCACCAGCTGTAACTCTTGTGAAGGAGACTTCGTCCTAGACCATGGGGTGTGCTGGAAAACTTGCCCTGAAAAGCACGTGGCCGTGGAAGGAGTCTGCAAGCACTGTCCAGAGAGGTGCCAGGACTGCATCCACGAGAAAACTTGCAAAG ctttcatcttaagaaaatgtaatatggcgtgggctttttatctgtttcagGGGCTTTTATGCAAAAGATGGTGTTTGTGAACACTGTAGTTCCCCTTGCAAAACGTGCGAGGGAAACACCGCAAGCTGTAACTCTTGTGAAGGAGACTTTGTCCTAGATCATGGAGTGTGCTGGAAAACATGCCCTGAAAAGCATGTTGCTGTGGAAGGGGTCTGCAAGCACTGTCCTGAGAGGTGTCATGACTGTATCCATGAGAAAACCTGTAAAGgtaagttgtgacacccaggcccaaaaaaaggcataaatcagtaaaggaga Alignment from Spaln_nt2Genome GGGCTTTTATGCAAAAGATGGTGTTTGTGAACACTGTAGTTCCCCTTGCAAAACATGCGAAGGAAATGCCACCAGCTGTAACTCTTGTGAAGGAGACTTCGTCCTAGACCATGGGGTGTGCTGGAAAACTTGCCCTGAAAAGCACGTGGCCGTGGAAGGAGTCTGCAAGCACTGTCCAGAGAGGTGCCAGGACTGCATCCACGAGAAAACTTGCAAAG ctttcatcttaagaaaatgtaatatggcgtgggctttttatctgtttcagGGGCTTTTATGCAAAAGATGGTGTTTGTGAACACTGTAGTTCCCCTTGCAAAACGTGCGAGGGAAACACCGCAAGCTGTAACTCTTGTGAAGGAGACTTTGTCCTAGATCATGGAGTGTGCTGGAAAACATGCCCTGAAAAGCATGTTGCTGTGGAAGGGGTCTGCAAGCACTGTCCTGAGAGGTGTCATGACTGTATCCATGAGAAAACCTGTAAAGgtaagttgtgacacccaggcccaaaaaaaggcataaatcagtaaaggaga Alignment from Pairagon GGGCTTTTATGCAAAAGATGGTGTTTGTGAACACTGTAGTTCCCCTTGCAAAACATGCGAAGGAAATGCCACCAGCTGTAACTCTTGTGAAGGAGACTTCGTCCTAGACCATGGGGTGTGCTGGAAAACTTGCCCTGAAAAGCACGTGGCCGTGGAAGGAGTCTGCAAGCACTGTCCAGAGAGGTGCCAGGACTGCATCCACGAGAAAACTTGCAAAG ctttcatcttaagaaaatgtaatatggcgtgggctttttatctgtttcagGGGCTTTTATGCAAAAGATGGTGTTTGTGAACACTGTAGTTCCCCTTGCAAAACGTGCGAGGGAAACACCGCAAGCTGTAACTCTTGTGAAGGAGACTTTGTCCTAGATCATGGAGTGTGCTGGAAAACATGCCCTGAAAAGCATGTTGCTGTGGAAGGGGTCTGCAAGCACTGTCCTGAGAGGTGTCATGACTGTATCCATGAGAAAACCTGTAAAGgtaagttgtgacacccaggcccaaaaaaaggcataaatcagtaaaggaga Alignment from Exonerate_protein2genome GGGCTTTTATGCAAAAGATGGTGTTTGTGAACACTGTAGTTCCCCTTGCAAAACATGCGAAGGAAATGCCACCAGCTGTAACTCTTGTGAAGGAGACTTCGTCCTAGACCATGGGGTGTGCTGGAAAACTTGCCCTGAAAAGCACGTGGCCGTGGAAGGAGTCTGCAAGCACTGTCCAGAGAGGTGCCAGGACTGCATCCACGAGAAAACTTGCAAAG ctttcatcttaagaaaatgtaatatggcgtgggctttttatctgtttcagGGGCTTTTATGCAAAAGATGGTGTTTGTGAACACTGTAGTTCCCCTTGCAAAACGTGCGAGGGAAACACCGCAAGCTGTAACTCTTGTGAAGGAGACTTTGTCCTAGATCATGGAGTGTGCTGGAAAACATGCCCTGAAAAGCATGTTGCTGTGGAAGGGGTCTGCAAGCACTGTCCTGAGAGGTGTCATGACTGTATCCATGAGAAAACCTGTAAAGgtaagttgtgacacccaggcccaaaaaaaggcataaatcagtaaaggaga Alignment from Exonerate_coding2genome GGGCTTTTATGCAAAAGATGGTGTTTGTGAACACTGTAGTTCCCCTTGCAAAACATGCGAAGGAAATGCCACCAGCTGTAACTCTTGTGAAGGAGACTTCGTCCTAGACCATGGGGTGTGCTGGAAAACTTGCCCTGAAAAGCACGTGGCCGTGGAAGGAGTCTGCAAGCACTGTCCAGAGAGGTGCCAGGACTGCATCCACGAGAAAACTTGCAAAG ctttcatcttaagaaaatgtaatatggcgtgggctttttatctgtttcagGGGCTTTTATGCAAAAGATGGTGTTTGTGAACACTGTAGTTCCCCTTGCAAAACGTGCGAGGGAAACACCGCAAGCTGTAACTCTTGTGAAGGAGACTTTGTCCTAGATCATGGAGTGTGCTGGAAAACATGCCCTGAAAAGCATGTTGCTGTGGAAGGGGTCTGCAAGCACTGTCCTGAGAGGTGTCATGACTGTATCCATGAGAAAACCTGTAAAGgtaagttgtgacacccaggcccaaaaaaaggcataaatcagtaaaggaga Alignment from GeneWise GGGCTTTTATGCAAAAGATGGTGTTTGTGAACACTGTAGTTCCCCTTGCAAAACATGCGAAGGAAATGCCACCAGCTGTAACTCTTGTGAAGGAGACTTCGTCCTAGACCATGGGGTGTGCTGGAAAACTTGCCCTGAAAAGCACGTGGCCGTGGAAGGAGTCTGCAAGCACTGTCCAGAGAGGTGCCAGGACTGCATCCACGAGAAAACTTGCAAAG ctttcatcttaagaaaatgtaatatggcgtgggctttttatctgtttcagGGGCTTTTATGCAAAAGATGGTGTTTGTGAACACTGTAGTTCCCCTTGCAAAACGTGCGAGGGAAACACCGCAAGCTGTAACTCTTGTGAAGGAGACTTTGTCCTAGATCATGGAGTGTGCTGGAAAACATGCCCTGAAAAGCATGTTGCTGTGGAAGGGGTCTGCAAGCACTGTCCTGAGAGGTGTCATGACTGTATCCATGAGAAAACCTGTAAAGgtaagttgtgacacccaggcccaaaaaaaggcataaatcagtaaaggaga #### Pcsk5_ID4237_30 --> 2 - 2 Original Alignment gtATGTACCTGTGGCTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACCAGTGGCAGCTGTGAAAAGTGTTCCGAGGACTGTGTCTCCTGCTCCGGTGCCGACCTTTGCCAACAGTGCCTGAGCCAGCCGGACAACACTCTGCTTCTCCATGAGGGCAGGTGCTACCACAGTTGCCCAga tgcccaagatcttctgttacaacaccttctgtgtgttctcctgtgcacaggtATGTACCTGTGGTTGCAGGCCTGTGTACCTTCCTGCCCACAAGGTACTTGGCCATCAGTTACAAGTGGCAGTTGCAAAAAGTGTTCAGAGGATTGTGTCTCCTGCTCCAGTGCTGAACTTTGCCAACAGTGCTTGAGCCAACCAGACAATACACTTCTACTGCATGATGGTAAATGCTATCACAGTTGTCCAgagtgagtatgtatccccacttatgttctgtaggtatttctttatacctgag Alignment from CESAR gtATGTACCTGTGGCTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACCAGTGGCAGCTGTGAAAAGTGTTCCGAGGACTGTGTCTCCTGCTCCGGTGCCGACCTTTGCCAACAGTGCCTGAGCCAGCCGGACAACACTCTGCTTCTCCATGAGGGCAGGTGCTACCACAGTTGCCCAga tgcccaagatcttctgttacaacaccttctgtgtgttctcctgtgcacaggtATGTACCTGTGGTTGCAGGCCTGTGTACCTTCCTGCCCACAAGGTACTTGGCCATCAGTTACAAGTGGCAGTTGCAAAAAGTGTTCAGAGGATTGTGTCTCCTGCTCCAGTGCTGAACTTTGCCAACAGTGCTTGAGCCAACCAGACAATACACTTCTACTGCATGATGGTAAATGCTATCACAGTTGTCCAgagtgagtatgtatccccacttatgttctgtaggtatttctttatacctgag Alignment from Spaln_aa2Genome GTATGTACCTGTGGCTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACCAGTGGCAGCTGTGAAAAGTGTTCCGAGGACTGTGTCTCCTGCTCCGGTGCCGACCTTTGCCAACAGTGCCTGAGCCAGCCGGACAACACTCTGCTTCTCCATGAGGGCAGGTGCTACCACAGTTGCCCAGA tgcccaagatcttctgttacaacaccttctgtgtgttctcctgtgcacagGTATGTACCTGTGGTTGCAGGCCTGTGTACCTTCCTGCCCACAAGGTACTTGGCCATCAGTTACAAGTGGCAGTTGCAAAAAGTGTTCAGAGGATTGTGTCTCCTGCTCCAGTGCTGAACTTTGCCAACAGTGCTTGAGCCAACCAGACAATACACTTCTACTGCATGATGGTAAATGCTATCACAGTTGTCCAGAgtgagtatgtatccccacttatgttctgtaggtatttctttatacctgag Alignment from Spaln_nt2Genome GTATGTACCTGTGGCTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACCAGTGGCAGCTGTGAAAAGTGTTCCGAGGACTGTGTCTCCTGCTCCGGTGCCGACCTTTGCCAACAGTGCCTGAGCCAGCCGGACAACACTCTGCTTCTCCATGAGGGCAGGTGCTACCACAGTTGCCCAGA tgcccaagatcttctgttacaacaccttctgtgtgttctcctgtgcacagGTATGTACCTGTGGTTGCAGGCCTGTGTACCTTCCTGCCCACAAGGTACTTGGCCATCAGTTACAAGTGGCAGTTGCAAAAAGTGTTCAGAGGATTGTGTCTCCTGCTCCAGTGCTGAACTTTGCCAACAGTGCTTGAGCCAACCAGACAATACACTTCTACTGCATGATGGTAAATGCTATCACAGTTGTCCAGAgtgagtatgtatccccacttatgttctgtaggtatttctttatacctgag Alignment from Pairagon GTATGTACCTGTGGCTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACCAGTGGCAGCTGTGAAAAGTGTTCCGAGGACTGTGTCTCCTGCTCCGGTGCCGACCTTTGCCAACAGTGCCTGAGCCAGCCGGACAACACTCTGCTTCTCCATGAGGGCAGGTGCTACCACAGTTGCCCAGA tgcccaagatcttctgttacaacaccttctgtgtgttctcctgtgcacagGTATGTACCTGTGGTTGCAGGCCTGTGTACCTTCCTGCCCACAAGGTACTTGGCCATCAGTTACAAGTGGCAGTTGCAAAAAGTGTTCAGAGGATTGTGTCTCCTGCTCCAGTGCTGAACTTTGCCAACAGTGCTTGAGCCAACCAGACAATACACTTCTACTGCATGATGGTAAATGCTATCACAGTTGTCCAGAgtgagtatgtatccccacttatgttctgtaggtatttctttatacctgag Alignment from Exonerate_protein2genome GTATGTACCTGTGGCTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACCAGTGGCAGCTGTGAAAAGTGTTCCGAGGACTGTGTCTCCTGCTCCGGTGCCGACCTTTGCCAACAGTGCCTGAGCCAGCCGGACAACACTCTGCTTCTCCATGAGGGCAGGTGCTACCACAGTTGCCCAGA tgcccaagatcttctgttacaacaccttctgtgtgttctcctgtgcacagGTATGTACCTGTGGTTGCAGGCCTGTGTACCTTCCTGCCCACAAGGTACTTGGCCATCAGTTACAAGTGGCAGTTGCAAAAAGTGTTCAGAGGATTGTGTCTCCTGCTCCAGTGCTGAACTTTGCCAACAGTGCTTGAGCCAACCAGACAATACACTTCTACTGCATGATGGTAAATGCTATCACAGTTGTCCAGAgtgagtatgtatccccacttatgttctgtaggtatttctttatacctgag Alignment from Exonerate_coding2genome GTATGTACCTGTGGCTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACCAGTGGCAGCTGTGAAAAGTGTTCCGAGGACTGTGTCTCCTGCTCCGGTGCCGACCTTTGCCAACAGTGCCTGAGCCAGCCGGACAACACTCTGCTTCTCCATGAGGGCAGGTGCTACCACAGTTGCCCAGA tgcccaagatcttctgttacaacaccttctgtgtgttctcctgtgcacagGTATGTACCTGTGGTTGCAGGCCTGTGTACCTTCCTGCCCACAAGGTACTTGGCCATCAGTTACAAGTGGCAGTTGCAAAAAGTGTTCAGAGGATTGTGTCTCCTGCTCCAGTGCTGAACTTTGCCAACAGTGCTTGAGCCAACCAGACAATACACTTCTACTGCATGATGGTAAATGCTATCACAGTTGTCCAGAgtgagtatgtatccccacttatgttctgtaggtatttctttatacctgag Alignment from GeneWise GTATGTACCTGTGGCTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACCAGTGGCAGCTGTGAAAAGTGTTCCGAGGACTGTGTCTCCTGCTCCGGTGCCGACCTTTGCCAACAGTGCCTGAGCCAGCCGGACAACACTCTGCTTCTCCATGAGGGCAGGTGCTACCACAGTTGCCCAGA tgcccaagatcttctgttacaacaccttctgtgtgttctcctgtgcacagGTATGTACCTGTGGTTGCAGGCCTGTGTACCTTCCTGCCCACAAGGTACTTGGCCATCAGTTACAAGTGGCAGTTGCAAAAAGTGTTCAGAGGATTGTGTCTCCTGCTCCAGTGCTGAACTTTGCCAACAGTGCTTGAGCCAACCAGACAATACACTTCTACTGCATGATGGTAAATGCTATCACAGTTGTCCAGAgtgagtatgtatccccacttatgttctgtaggtatttctttatacctgag #### Pcsk5_ID4242_27 --> 2 - 1 Original Alignment gtGGCAGCTGTGTGCAGGATTGTGGCCCTGGCTTCCATGGAGACCAAGAGTTGGGAGAATGCAAGCCCTGCCACCGAGCCTGTGAGAATTGCACTGGCTCGGGCTACAACCAATGCAGCAGCTGTCAAGAAGGGTTGCAGCTATGGCATGGGACGTGTCTCTGGTCCACCTGGCCTCAGGTGGAAGGCAAGGACTGGAATg gacctactagtgggtcaaagcaccccaaattaacgtttttcgtttttcaggtAGCAGTTGTGTCCAGGATTGTGGACCTGGCTTCCATGGAGAGCAAGAATTGGGAGAATGCAAGCCCTGCCAGCAGGTATGTGAAAACTGCACCAGTTCAGGGTACAACCAATGCAGCAGTTGCCAAGAAGGATTGCAGCTATGGCATGGGACGTGCCTTTGGTCTACATGGCCCCAGATTGAGGGCAAGGACTGGAATggtactgttccaagggaagtgaggttaatataatttctgtcaaatgctcct Alignment from CESAR gtGGCAGCTGTGTGCAGGATTGTGGCCCTGGCTTCCATGGAGACCAAGAGTTGGGAGAATGCAAGCCCTGCCACCGAGCCTGTGAGAATTGCACTGGCTCGGGCTACAACCAATGCAGCAGCTGTCAAGAAGGGTTGCAGCTATGGCATGGGACGTGTCTCTGGTCCACCTGGCCTCAGGTGGAAGGCAAGGACTGGAATg gacctactagtgggtcaaagcaccccaaattaacgtttttcgtttttcaggtAGCAGTTGTGTCCAGGATTGTGGACCTGGCTTCCATGGAGAGCAAGAATTGGGAGAATGCAAGCCCTGCCAGCAGGTATGTGAAAACTGCACCAGTTCAGGGTACAACCAATGCAGCAGTTGCCAAGAAGGATTGCAGCTATGGCATGGGACGTGCCTTTGGTCTACATGGCCCCAGATTGAGGGCAAGGACTGGAATggtactgttccaagggaagtgaggttaatataatttctgtcaaatgctcct Alignment from Spaln_aa2Genome GTGGCAGCTGTGTGCAGGATTGTGGCCCTGGCTTCCATGGAGACCAAGAGTTGGGAGAATGCAAGCCCTGCCACCGAGCCTGTGAGAATTGCACTGGCTCGGGCTACAACCAATGCAGCAGCTGTCAAGAAGGGTTGCAGCTATGGCATGGGACGTGTCTCTGGTCCACCTGGCCTCAGGTGGAAGGCAAGGACTGGAATG gacctactagtgggtcaaagcaccccaaattaacgtttttcgtttttcagGTAGCAGTTGTGTCCAGGATTGTGGACCTGGCTTCCATGGAGAGCAAGAATTGGGAGAATGCAAGCCCTGCCAGCAGGTATGTGAAAACTGCACCAGTTCAGGGTACAACCAATGCAGCAGTTGCCAAGAAGGATTGCAGCTATGGCATGGGACGTGCCTTTGGTCTACATGGCCCCAGATTGAGGGCAAGGACTGGAATGgtactgttccaagggaagtgaggttaatataatttctgtcaaatgctcct Alignment from Spaln_nt2Genome GTGGCAGCTGTGTGCAGGATTGTGGCCCTGGCTTCCATGGAGACCAAGAGTTGGGAGAATGCAAGCCCTGCCACCGAGCCTGTGAGAATTGCACTGGCTCGGGCTACAACCAATGCAGCAGCTGTCAAGAAGGGTTGCAGCTATGGCATGGGACGTGTCTCTGGTCCACCTGGCCTCAGGTGGAAGGCAAGGACTGGAATG gacctactagtgggtcaaagcaccccaaattaacgtttttcgtttttcagGTAGCAGTTGTGTCCAGGATTGTGGACCTGGCTTCCATGGAGAGCAAGAATTGGGAGAATGCAAGCCCTGCCAGCAGGTATGTGAAAACTGCACCAGTTCAGGGTACAACCAATGCAGCAGTTGCCAAGAAGGATTGCAGCTATGGCATGGGACGTGCCTTTGGTCTACATGGCCCCAGATTGAGGGCAAGGACTGGAATGgtactgttccaagggaagtgaggttaatataatttctgtcaaatgctcct Alignment from Pairagon GTGGCAGCTGTGTGCAGGATTGTGGCCCTGGCTTCCATGGAGACCAAGAGTTGGGAGAATGCAAGCCCTGCCACCGAGCCTGTGAGAATTGCACTGGCTCGGGCTACAACCAATGCAGCAGCTGTCAAGAAGGGTTGCAGCTATGGCATGGGACGTGTCTCTGGTCCACCTGGCCTCAGGTGGAAGGCAAGGACTGGAATG gacctactagtgggtcaaagcaccccaaattaacgtttttcgtttttcagGTAGCAGTTGTGTCCAGGATTGTGGACCTGGCTTCCATGGAGAGCAAGAATTGGGAGAATGCAAGCCCTGCCAGCAGGTATGTGAAAACTGCACCAGTTCAGGGTACAACCAATGCAGCAGTTGCCAAGAAGGATTGCAGCTATGGCATGGGACGTGCCTTTGGTCTACATGGCCCCAGATTGAGGGCAAGGACTGGAATGgtactgttccaagggaagtgaggttaatataatttctgtcaaatgctcct Alignment from Exonerate_protein2genome GTGGCAGCTGTGTGCAGGATTGTGGCCCTGGCTTCCATGGAGACCAAGAGTTGGGAGAATGCAAGCCCTGCCACCGAGCCTGTGAGAATTGCACTGGCTCGGGCTACAACCAATGCAGCAGCTGTCAAGAAGGGTTGCAGCTATGGCATGGGACGTGTCTCTGGTCCACCTGGCCTCAGGTGGAAGGCAAGGACTGGAATG gacctactagtgggtcaaagcaccccaaattaacgtttttcgtttttcagGTAGCAGTTGTGTCCAGGATTGTGGACCTGGCTTCCATGGAGAGCAAGAATTGGGAGAATGCAAGCCCTGCCAGCAGGTATGTGAAAACTGCACCAGTTCAGGGTACAACCAATGCAGCAGTTGCCAAGAAGGATTGCAGCTATGGCATGGGACGTGCCTTTGGTCTACATGGCCCCAGATTGAGGGCAAGGACTGGAATGgtactgttccaagggaagtgaggttaatataatttctgtcaaatgctcct Alignment from Exonerate_coding2genome GTGGCAGCTGTGTGCAGGATTGTGGCCCTGGCTTCCATGGAGACCAAGAGTTGGGAGAATGCAAGCCCTGCCACCGAGCCTGTGAGAATTGCACTGGCTCGGGCTACAACCAATGCAGCAGCTGTCAAGAAGGGTTGCAGCTATGGCATGGGACGTGTCTCTGGTCCACCTGGCCTCAGGTGGAAGGCAAGGACTGGAATG gacctactagtgggtcaaagcaccccaaattaacgtttttcgtttttcagGTAGCAGTTGTGTCCAGGATTGTGGACCTGGCTTCCATGGAGAGCAAGAATTGGGAGAATGCAAGCCCTGCCAGCAGGTATGTGAAAACTGCACCAGTTCAGGGTACAACCAATGCAGCAGTTGCCAAGAAGGATTGCAGCTATGGCATGGGACGTGCCTTTGGTCTACATGGCCCCAGATTGAGGGCAAGGACTGGAATGgtactgttccaagggaagtgaggttaatataatttctgtcaaatgctcct Alignment from GeneWise GTGGCAGCTGTGTGCAGGATTGTGGCCCTGGCTTCCATGGAGACCAAGAGTTGGGAGAATGCAAGCCCTGCCACCGAGCCTGTGAGAATTGCACTGGCTCGGGCTACAACCAATGCAGCAGCTGTCAAGAAGGGTTGCAGCTATGGCATGGGACGTGTCTCTGGTCCACCTGGCCTCAGGTGGAAGGCAAGGACTGGAATG gacctactagtgggtcaaagcaccccaaattaacgtttttcgtttttcagGTAGCAGTTGTGTCCAGGATTGTGGACCTGGCTTCCATGGAGAGCAAGAATTGGGAGAATGCAAGCCCTGCCAGCAGGTATGTGAAAACTGCACCAGTTCAGGGTACAACCAATGCAGCAGTTGCCAAGAAGGATTGCAGCTATGGCATGGGACGTGCCTTTGGTCTACATGGCCCCAGATTGAGGGCAAGGACTGGAATGgtactgttccaagggaagtgaggttaatataatttctgtcaaatgctcct #### Pcsk5_ID4257_24 --> 2 - 1 Original Alignment gtGAATTCCAGGATTCTGAGTATGAAGAATGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGg tcaactatgcaatcaaccagtatctagaatgggttcttccttccttacaggtGAATTCCAGGATTCTGAGTATGAAGACTGCATGCCCTGTGAGGAAGGATGTCTAGGATGCACTGAGggtacgacaacaattgtatagagatacaatatgaagataatttaccccatt Alignment from CESAR gtGAATTCCAGGATTCTGAGTATGAAGAATGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGg tcaactatgcaatcaaccagtatctagaatgggttcttccttccttacaggtGAATTCCAGGATTCTGAGTATGAAGACTGCATGCCCTGTGAGGAAGGATGTCTAGGATGCACTGAGggtacgacaacaattgtatagagatacaatatgaagataatttaccccatt Alignment from Spaln_aa2Genome GTGAATTCCAGGATTCTGAGTATGAAGAATGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGG tcaactatgcaatcaaccagtatctagaatgggttcttccttccttacagGTGAATTCCAGGATTCTGAGTATGAAGACTGCATGCCCTGTGAGGAAGGATGTCTAGGATGCACTGAGGgtacgacaacaattgtatagagatacaatatgaagataatttaccccatt Alignment from Spaln_nt2Genome GTGAATTCCAGGATTCTGAGTATGAAGAATGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGG tcaactatgcaatcaaccagtatctagaatgggttcttccttccttacagGTGAATTCCAGGATTCTGAGTATGAAGACTGCATGCCCTGTGAGGAAGGATGTCTAGGATGCACTGAGGgtacgacaacaattgtatagagatacaatatgaagataatttaccccatt Alignment from Pairagon GTGAATTCCAGGATTCTGAGTATGAAGAATGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGG tcaactatgcaatcaaccagtatctagaatgggttcttccttccttacagGTGAATTCCAGGATTCTGAGTATGAAGACTGCATGCCCTGTGAGGAAGGATGTCTAGGATGCACTGAGGgtacgacaacaattgtatagagatacaatatgaagataatttaccccatt Alignment from Exonerate_protein2genome GTGAATTCCAGGATTCTGAGTATGAAGAATGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGG tcaactatgcaatcaaccagtatctagaatgggttcttccttccttacagGTGAATTCCAGGATTCTGAGTATGAAGACTGCATGCCCTGTGAGGAAGGATGTCTAGGATGCACTGAGGgtacgacaacaattgtatagagatacaatatgaagataatttaccccatt Alignment from Exonerate_coding2genome GTGAATTCCAGGATTCTGAGTATGAAGAATGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGG tcaactatgcaatcaaccagtatctagaatgggttcttccttccttacagGTGAATTCCAGGATTCTGAGTATGAAGACTGCATGCCCTGTGAGGAAGGATGTCTAGGATGCACTGAGGgtacgacaacaattgtatagagatacaatatgaagataatttaccccatt Alignment from GeneWise GTGAATTCCAGGATTCTGAGTATGAAGAATGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGG tcaactatgcaatcaaccagtatctagaatgggttcttccttccttacagGTGAATTCCAGGATTCTGAGTATGAAGACTGCATGCCCTGTGAGGAAGGATGTCTAGGATGCACTGAGGgtacgacaacaattgtatagagatacaatatgaagataatttaccccatt #### Pcsk5_ID4258_23 --> 2 - 1 Original Alignment acAAGCATGGTCAGGAGCGCTTCCTGTACCACGGGGAATGTCTGGAGAACTGCCCTGTGGGCCAT---------------TATCCTGCCAAGGGACACGCCTGCCTACCCTGCCCAGACAACTGTGAGCTTTGCTACAACCCACACGTCTGCAGTCGATGCATGAGTGGCTATGTCATCATTCCCCCCAACCACACCTGCCAGAAGCTGGAGTGCAGACAAg ttatctcttcctcaaaggatgcagctaactcccaccttctcgtcatttagacCAACATAGTCAGGAGCGATTCCTGTATCATGGGGATTGTCTAGAGAACTGCCCTGTCGGTCATTTCCAGTGGACAACCAATCCTGCAAAGGGACATGCCTGCCTACCCTGCCCTGACAACTGTGCACTATGCTATAACCCACATGTTTGCAGTCAGTGTATGAATGGTTACGTTATCATTCCTCCAAATGATACCTGCCATAAGCTAGAATGCAAAAAAggtaagctttctcagaaatttaacccaatgatgtctagctcataagaatct Alignment from CESAR acAAGCATGGTCAGGAGCGCTTCCTGTACCACGGGGAATGTCTGGAGAACTGCCCTGTGGGCCATTAT---------------CCTGCCAAGGGACACGCCTGCCTACCCTGCCCAGACAACTGTGAGCTTTGCTACAACCCACACGTCTGCAGTCGATGCATGAGTGGCTATGTCATCATTCCCCCCAACCACACCTGCCAGAAGCTGGAGTGCAGACAAg ttatctcttcctcaaaggatgcagctaactcccaccttctcgtcatttagacCAACATAGTCAGGAGCGATTCCTGTATCATGGGGATTGTCTAGAGAACTGCCCTGTCGGTCATTTCCAGTGGACAACCAATCCTGCAAAGGGACATGCCTGCCTACCCTGCCCTGACAACTGTGCACTATGCTATAACCCACATGTTTGCAGTCAGTGTATGAATGGTTACGTTATCATTCCTCCAAATGATACCTGCCATAAGCTAGAATGCAAAAAAggtaagctttctcagaaatttaacccaatgatgtctagctcataagaatct Alignment from Spaln_aa2Genome ACAAGCATGGTCAGGAGCGCTTCCTGTACCACGGGGAATGTCTGGAGAACTGCCCTGTGGGCCATTAT---------------CCTGCCAAGGGACACGCCTGCCTACCCTGCCCAGACAACTGTGAGCTTTGCTACAACCCACACGTCTGCAGTCGATGCATGAGTGGCTATGTCATCATTCCCCCCAACCACACCTGCCAGAAGCTGGAGTGCAGACAAG ttatctcttcctcaaaggatgcagctaactcccaccttctcgtcatttagACCAACATAGTCAGGAGCGATTCCTGTATCATGGGGATTGTCTAGAGAACTGCCCTGTCGGTCATTTCCAGTGGACAACCAATCCTGCAAAGGGACATGCCTGCCTACCCTGCCCTGACAACTGTGCACTATGCTATAACCCACATGTTTGCAGTCAGTGTATGAATGGTTACGTTATCATTCCTCCAAATGATACCTGCCATAAGCTAGAATGCAAAAAAGgtaagctttctcagaaatttaacccaatgatgtctagctcataagaatct Alignment from Spaln_nt2Genome ACAAGCATGGTCAGGAGCGCTTCCTGTACCACGGGGAATGTCTGGAGAACTGCCCTGTGGGCCATT---------------ATCCTGCCAAGGGACACGCCTGCCTACCCTGCCCAGACAACTGTGAGCTTTGCTACAACCCACACGTCTGCAGTCGATGCATGAGTGGCTATGTCATCATTCCCCCCAACCACACCTGCCAGAAGCTGGAGTGCAGACAAG ttatctcttcctcaaaggatgcagctaactcccaccttctcgtcatttagACCAACATAGTCAGGAGCGATTCCTGTATCATGGGGATTGTCTAGAGAACTGCCCTGTCGGTCATTTCCAGTGGACAACCAATCCTGCAAAGGGACATGCCTGCCTACCCTGCCCTGACAACTGTGCACTATGCTATAACCCACATGTTTGCAGTCAGTGTATGAATGGTTACGTTATCATTCCTCCAAATGATACCTGCCATAAGCTAGAATGCAAAAAAGgtaagctttctcagaaatttaacccaatgatgtctagctcataagaatct Alignment from Pairagon ACAAGCATGGTCAGGAGCGCTTCCTGTACCACGGGGAATGTCTGGAGAACTGCCCTGTGGGCCATT---------------ATCCTGCCAAGGGACACGCCTGCCTACCCTGCCCAGACAACTGTGAGCTTTGCTACAACCCACACGTCTGCAGTCGATGCATGAGTGGCTATGTCATCATTCCCCCCAACCACACCTGCCAGAAGCTGGAGTGCAGACAAG ttatctcttcctcaaaggatgcagctaactcccaccttctcgtcatttagACCAACATAGTCAGGAGCGATTCCTGTATCATGGGGATTGTCTAGAGAACTGCCCTGTCGGTCATTTCCAGTGGACAACCAATCCTGCAAAGGGACATGCCTGCCTACCCTGCCCTGACAACTGTGCACTATGCTATAACCCACATGTTTGCAGTCAGTGTATGAATGGTTACGTTATCATTCCTCCAAATGATACCTGCCATAAGCTAGAATGCAAAAAAGgtaagctttctcagaaatttaacccaatgatgtctagctcataagaatct Alignment from Exonerate_protein2genome ACAAGCATGGTCAGGAGCGCTTCCTGTACCACGGGGAATGTCTGGAGAACTGCCCTGTGGGCCATTAT---------------CCTGCCAAGGGACACGCCTGCCTACCCTGCCCAGACAACTGTGAGCTTTGCTACAACCCACACGTCTGCAGTCGATGCATGAGTGGCTATGTCATCATTCCCCCCAACCACACCTGCCAGAAGCTGGAGTGCAGACAAG ttatctcttcctcaaaggatgcagctaactcccaccttctcgtcatttagACCAACATAGTCAGGAGCGATTCCTGTATCATGGGGATTGTCTAGAGAACTGCCCTGTCGGTCATTTCCAGTGGACAACCAATCCTGCAAAGGGACATGCCTGCCTACCCTGCCCTGACAACTGTGCACTATGCTATAACCCACATGTTTGCAGTCAGTGTATGAATGGTTACGTTATCATTCCTCCAAATGATACCTGCCATAAGCTAGAATGCAAAAAAGgtaagctttctcagaaatttaacccaatgatgtctagctcataagaatct Alignment from Exonerate_coding2genome ACAAGCATGGTCAGGAGCGCTTCCTGTACCACGGGGAATGTCTGGAGAACTGCCCTGTGGGCCATTAT---------------CCTGCCAAGGGACACGCCTGCCTACCCTGCCCAGACAACTGTGAGCTTTGCTACAACCCACACGTCTGCAGTCGATGCATGAGTGGCTATGTCATCATTCCCCCCAACCACACCTGCCAGAAGCTGGAGTGCAGACAAG ttatctcttcctcaaaggatgcagctaactcccaccttctcgtcatttagACCAACATAGTCAGGAGCGATTCCTGTATCATGGGGATTGTCTAGAGAACTGCCCTGTCGGTCATTTCCAGTGGACAACCAATCCTGCAAAGGGACATGCCTGCCTACCCTGCCCTGACAACTGTGCACTATGCTATAACCCACATGTTTGCAGTCAGTGTATGAATGGTTACGTTATCATTCCTCCAAATGATACCTGCCATAAGCTAGAATGCAAAAAAGgtaagctttctcagaaatttaacccaatgatgtctagctcataagaatct Alignment from GeneWise ACAAGCATGGTCAGGAGCGCTTCCTGTACCACGGGGAATGTCTGGAGAACTGCCCTGTGGGCCATTAT---------------CCTGCCAAGGGACACGCCTGCCTACCCTGCCCAGACAACTGTGAGCTTTGCTACAACCCACACGTCTGCAGTCGATGCATGAGTGGCTATGTCATCATTCCCCCCAACCACACCTGCCAGAAGCTGGAGTGCAGACAAG ttatctcttcctcaaaggatgcagctaactcccaccttctcgtcatttagACCAACATAGTCAGGAGCGATTCCTGTATCATGGGGATTGTCTAGAGAACTGCCCTGTCGGTCATTTCCAGTGGACAACCAATCCTGCAAAGGGACATGCCTGCCTACCCTGCCCTGACAACTGTGCACTATGCTATAACCCACATGTTTGCAGTCAGTGTATGAATGGTTACGTTATCATTCCTCCAAATGATACCTGCCATAAGCTAGAATGCAAAAAAGgtaagctttctcagaaatttaacccaatgatgtctagctcataagaatct #### Pcsk5_ID4264_19 --> 2 - 2 Original Alignment ggGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGag gagtatgatatgtacgaactgattgcctaaggcgtttgctttgtctctagggGCTGGAGCAGATGGATTCATAAATTGCACTGAGGGGTATGTTATGGAAGAGGGAAAATGCGTTCAGAGTTGTAGTGTGAGTTACTACTTGGATCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAaggtgagtttatcaatggtactctacccctgacactaagtatgattcagttt Alignment from CESAR ggGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGag gagtatgatatgtacgaactgattgcctaaggcgtttgctttgtctctagggGCTGGAGCAGATGGATTCATAAATTGCACTGAGGGGTATGTTATGGAAGAGGGAAAATGCGTTCAGAGTTGTAGTGTGAGTTACTACTTGGATCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAaggtgagtttatcaatggtactctacccctgacactaagtatgattcagttt Alignment from Spaln_aa2Genome GGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG gagtatgatatgtacgaactgattgcctaaggcgtttgctttgtctctagGGGCTGGAGCAGATGGATTCATAAATTGCACTGAGGGGTATGTTATGGAAGAGGGAAAATGCGTTCAGAGTTGTAGTGTGAGTTACTACTTGGATCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtgagtttatcaatggtactctacccctgacactaagtatgattcagttt Alignment from Spaln_nt2Genome GGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG gagtatgatatgtacgaactgattgcctaaggcgtttgctttgtctctagGGGCTGGAGCAGATGGATTCATAAATTGCACTGAGGGGTATGTTATGGAAGAGGGAAAATGCGTTCAGAGTTGTAGTGTGAGTTACTACTTGGATCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtgagtttatcaatggtactctacccctgacactaagtatgattcagttt Alignment from Pairagon GGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG gagtatgatatgtacgaactgattgcctaaggcgtttgctttgtctctagGGGCTGGAGCAGATGGATTCATAAATTGCACTGAGGGGTATGTTATGGAAGAGGGAAAATGCGTTCAGAGTTGTAGTGTGAGTTACTACTTGGATCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtgagtttatcaatggtactctacccctgacactaagtatgattcagttt Alignment from Exonerate_protein2genome CTTGCTCTGGGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG gagtatgatatgtacgaactgattgcctaaggcgtttgcttTGTCTCTAGGGGCTGGAGCAGATGGATTCATAAATTGCACTGAGGGGTATGTTATGGAAGAGGGAAAATGCGTTCAGAGTTGTAGTGTGAGTTACTACTTGGATCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtgagtttatcaatggtactctacccctgacactaagtatgattcagttt Alignment from Exonerate_coding2genome CTTGCTCTGGGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG gagtatgatatgtacgaactgattgcctaaggcgtttgcttTGTCTCTAGGGGCTGGAGCAGATGGATTCATAAATTGCACTGAGGGGTATGTTATGGAAGAGGGAAAATGCGTTCAGAGTTGTAGTGTGAGTTACTACTTGGATCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtgagtttatcaatggtactctacccctgacactaagtatgattcagttt Alignment from GeneWise GGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG gagtatgatatgtacgaactgattgcctaaggcgtttgctttgtctctagGGGCTGGAGCAGATGGATTCATAAATTGCACTGAGGGGTATGTTATGGAAGAGGGAAAATGCGTTCAGAGTTGTAGTGTGAGTTACTACTTGGATCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtgagtttatcaatggtactctacccctgacactaagtatgattcagttt #### Pcsk5_ID4265_18 --> 1 - 1 Original Alignment tCTTCAGGGATCCCGCTGTTCGGTCACCTGCGAGGATGGACAGTTCTTC---AATGGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTg aacactgtcctaaacccaatctctgaattctctctttctatgcctcccagtCTTCAGGGATCCCATTGCTCAGTTACTTGTGAAGATGGTCAATTCTTCAATAATGGTCACGACTGCCAGCCATGCCATCACTTC---------CGCTCTggtaagaagcacattagtgaatctccaccagaatatccgaacatgtagcaa Alignment from CESAR tCTTCAGGGATCCCGCTGTTCGGTCACCTGCGAGGATGGACAGTTCTTCAAT---GGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTg aacactgtcctaaacccaatctctgaattctctctttctatgcctcccagtCTTCAGGGATCCCATTGCTCAGTTACTTGTGAAGATGGTCAATTCTTCAATAATGGTCACGACTGCCAGCCATGCCATCACTTC---------CGCTCTggtaagaagcacattagtgaatctccaccagaatatccgaacatgtagcaa Alignment from Spaln_aa2Genome TCTTCAGGGATCCCGCTGTTCGGTCACCTGCGAGGATGGACAGTTCTTC---AATGGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTG aacactgtcctaaacccaatctctgaattctctctttctatgcctcccagTCTTCAGGGATCCCATTGCTCAGTTACTTGTGAAGATGGTCAATTCTTCAATAATGGTCACGACTGCCAGCCATGCCATCACTTC---------CGCTCTGgtaagaagcacattagtgaatctccaccagaatatccgaacatgtagcaa Alignment from Spaln_nt2Genome TCTTCAGGGATCCCGCTGTTCGGTCACCTGCGAGGATGGACAGTTCTTCAAT---GGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTG aacactgtcctaaacccaatctctgaattctctctttctatgcctcccagTCTTCAGGGATCCCATTGCTCAGTTACTTGTGAAGATGGTCAATTCTTCAATAATGGTCACGACTGCCAGCCATGCCATCACTTC---------CGCTCTGgtaagaagcacattagtgaatctccaccagaatatccgaacatgtagcaa Alignment from Pairagon TCTTCAGGGATCCCGCTGTTCGGTCACCTGCGAGGATGGACAGTTCTTC---AATGGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTG aacactgtcctaaacccaatctctgaattctctctttctatgcctcccagTCTTCAGGGATCCCATTGCTCAGTTACTTGTGAAGATGGTCAATTCTTCAATAATGGTCACGACTGCCAGCCATGCCATCACTTC---------CGCTCTGgtaagaagcacattagtgaatctccaccagaatatccgaacatgtagcaa Alignment from Exonerate_protein2genome TCTTCAGGGATCCCGCTGTTCGGTCACCTGCGAGGATGGACAGTTCTTC---AATGGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTG aacactgtcctaaacccaatctctgaattctctctttctatgcctcccagTCTTCAGGGATCCCATTGCTCAGTTACTTGTGAAGATGGTCAATTCTTCAATAATGGTCACGACTGCCAGCCATGCCATCACTTC---------CGCTCTGgtaagaagcacattagtgaatctccaccagaatatccgaacatgtagcaa Alignment from Exonerate_coding2genome TCTTCAGGGATCCCGCTGTTCGGTCACCTGCGAGGATGGACAGTTCTTC---AATGGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTG aacactgtcctaaacccaatctctgaattctctctttctatgcctcccagTCTTCAGGGATCCCATTGCTCAGTTACTTGTGAAGATGGTCAATTCTTCAATAATGGTCACGACTGCCAGCCATGCCATCACTTC---------CGCTCTGgtaagaagcacattagtgaatctccaccagaatatccgaacatgtagcaa Alignment from GeneWise TCTTCAGGGATCCCGCTGTTCGGTCACCTGCGAGGATGGACAGTTCTTCAAT---GGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTG aacactgtcctaaacccaatctctgaattctctctttctatgcctcccagTCTTCAGGGATCCCATTGCTCAGTTACTTGTGAAGATGGTCAATTCTTCAATAATGGTCACGACTGCCAGCCATGCCATCACTTCCGC---------TCTGgtaagaagcacattagtgaatctccaccagaatatccgaacatgtagcaa #### Pcsk5_ID4271_13 --> 1 - 1 Original Alignment gCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGGAGAACGGGCTGCTGGGGACTGGGTCCTCGAAGTTTATGATACGCCATCTCAGCTGAGGAACTTCAAGACTCCAg aggctccttgactcatcaagggggtttcaatttattacttgattcggtagaCTCTTTGATCATTCTATGGAGGGGTTTAAGAACTGGGAGTTCATGACAATCCATTGCTGGGCAGAACGAGCTGCAGGGGATTGGGTCCTC---GTTTATGGTACACTTTCTCAGCTGAGAAACTTTAAGACCCCAggtaaggaaccagttacatctaaaatcattagtggcattttttaggtgagc Alignment from CESAR gCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGGAGAACGGGCTGCTGGGGACTGGGTCCTCGAAGTTTATGATACGCCATCTCAGCTGAGGAACTTCAAGACTCCAg aggctccttgactcatcaagggggtttcaatttattacttgattcggtagaCTCTTTGATCATTCTATGGAGGGGTTTAAGAACTGGGAGTTCATGACAATCCATTGCTGGGCAGAACGAGCTGCAGGGGATTGGGTCCTC---GTTTATGGTACACTTTCTCAGCTGAGAAACTTTAAGACCCCAggtaaggaaccagttacatctaaaatcattagtggcattttttaggtgagc Alignment from Spaln_aa2Genome GCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGGAGAACGGGCTGCTGGGGACTGGGTCCTCGAAGTTTATGATACGCCATCTCAGCTGAGGAACTTCAAGACTCCAG aggctccttgactcatcaagggggtttcaatttattacttgattcggtagACTCTTTGATCATTCTATGGAGGGGTTTAAGAACTGGGAGTTCATGACAATCCATTGCTGGGCAGAACGAGCTGCAGGGGATTGGGTCCTC---GTTTATGGTACACTTTCTCAGCTGAGAAACTTTAAGACCCCAGgtaaggaaccagttacatctaaaatcattagtggcattttttaggtgagc Alignment from Spaln_nt2Genome GCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGGAGAACGGGCTGCTGGGGACTGGGTCCTCGAAGTTTATGATACGCCATCTCAGCTGAGGAACTTCAAGACTCCAG aggctccttgactcatcaagggggtttcaatttattacttgattcggtagACTCTTTGATCATTCTATGGAGGGGTTTAAGAACTGGGAGTTCATGACAATCCATTGCTGGGCAGAACGAGCTGCAGGGGATTGGGTCCTCG---TTTATGGTACACTTTCTCAGCTGAGAAACTTTAAGACCCCAGgtaaggaaccagttacatctaaaatcattagtggcattttttaggtgagc Alignment from Pairagon GCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGGAGAACGGGCTGCTGGGGACTGGGTCCTCGAAGTTTATGATACGCCATCTCAGCTGAGGAACTTCAAGACTCCAG aggctccttgactcatcaagggggtttcaatttattacttgattcggtagACTCTTTGATCATTCTATGGAGGGGTTTAAGAACTGGGAGTTCATGACAATCCATTGCTGGGCAGAACGAGCTGCAGGGGATTGGGTCCTC---GTTTATGGTACACTTTCTCAGCTGAGAAACTTTAAGACCCCAGgtaaggaaccagttacatctaaaatcattagtggcattttttaggtgagc Alignment from Exonerate_protein2genome GCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGGAGAACGGGCTGCTGGGGACTGGGTCCTCGAAGTTTATGATACGCCATCTCAGCTGAGGAACTTCAAGACTCCAG aggctccttgactcatcaagggggtttcaatttattacttgattcggtagACTCTTTGATCATTCTATGGAGGGGTTTAAGAACTGGGAGTTCATGACAATCCATTGCTGGGCAGAACGAGCTGCAGGGGATTGGGTCCTC---GTTTATGGTACACTTTCTCAGCTGAGAAACTTTAAGACCCCAGgtaaggaaccagttacatctaaaatcattagtggcattttttaggtgagc Alignment from Exonerate_coding2genome GCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGGAGAACGGGCTGCTGGGGACTGGGTCCTCGAAGTTTATGATACGCCATCTCAGCTGAGGAACTTCAAGACTCCAG aggctccttgactcatcaagggggtttcaatttattacttgattcggtagACTCTTTGATCATTCTATGGAGGGGTTTAAGAACTGGGAGTTCATGACAATCCATTGCTGGGCAGAACGAGCTGCAGGGGATTGGGTCCTC---GTTTATGGTACACTTTCTCAGCTGAGAAACTTTAAGACCCCAGgtaaggaaccagttacatctaaaatcattagtggcattttttaggtgagc Alignment from GeneWise GCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGGAGAACGGGCTGCTGGGGACTGGGTCCTCGAAGTTTATGATACGCCATCTCAGCTGAGGAACTTCAAGACTCCAG aggctccttgactcatcaagggggtttcaatttattacttgattcggtagACTCTTTGATCATTCTATGGAGGGGTTTAAGAACTGGGAGTTCATGACAATCCATTGCTGGGCAGAACGAGCTGCAGGGGATTGGGTCCTC---GTTTATGGTACACTTTCTCAGCTGAGAAACTTTAAGACCCCAGgtaaggaaccagttacatctaaaatcattagtggcattttttaggtgagc #### Pcsk5_ID4286_10 --> 1 - 1 Original Alignment tCCGTTTCTGACCTGG---AGAGACGTGCAGCATGTTATTGTCAGGACTTCCCGTGCGGGACATTTGAACGCTAATGACTGGAAAACCAATGCTGCTGGTTTTAAGg tctggtgccctcctactagacaatctgcgttctctgtttttgctccctagtCCATTTCTGTCATGGAGAGGAGATGTACAGCATGTCATTGTGAGGACTTCCCGAGCAGGCCATTTGAATGCTAATGACTGGGAAACAAATGCTGCTGGTTTTAAGggtaagctattcttttctaatcacacattaacccaaacattaacccaattt Alignment from CESAR tCCGTTTCTGACCTGGAGA---GACGTGCAGCATGTTATTGTCAGGACTTCCCGTGCGGGACATTTGAACGCTAATGACTGGAAAACCAATGCTGCTGGTTTTAAGg tctggtgccctcctactagacaatctgcgttctctgtttttgctccctagtCCATTTCTGTCATGGAGAGGAGATGTACAGCATGTCATTGTGAGGACTTCCCGAGCAGGCCATTTGAATGCTAATGACTGGGAAACAAATGCTGCTGGTTTTAAGggtaagctattcttttctaatcacacattaacccaaacattaacccaattt Alignment from Spaln_aa2Genome TCCGTTTCTGACCTGGAGA---GACGTGCAGCATGTTATTGTCAGGACTTCCCGTGCGGGACATTTGAACGCTAATGACTGGAAAACCAATGCTGCTGGTTTTAAGG tctggtgccctcctactagacaatctgcgttctctgtttttgctccctagTCCATTTCTGTCATGGAGAGGAGATGTACAGCATGTCATTGTGAGGACTTCCCGAGCAGGCCATTTGAATGCTAATGACTGGGAAACAAATGCTGCTGGTTTTAAGGgtaagctattcttttctaatcacacattaacccaaacattaacccaattt Alignment from Spaln_nt2Genome TCCGTTTCTGACCTGGAGAG---ACGTGCAGCATGTTATTGTCAGGACTTCCCGTGCGGGACATTTGAACGCTAATGACTGGAAAACCAATGCTGCTGGTTTTAAGG tctggtgccctcctactagacaatctgcgttctctgtttttgctccctagTCCATTTCTGTCATGGAGAGGAGATGTACAGCATGTCATTGTGAGGACTTCCCGAGCAGGCCATTTGAATGCTAATGACTGGGAAACAAATGCTGCTGGTTTTAAGGgtaagctattcttttctaatcacacattaacccaaacattaacccaattt Alignment from Pairagon TCCGTTTCTGACCTGGA---GAGACGTGCAGCATGTTATTGTCAGGACTTCCCGTGCGGGACATTTGAACGCTAATGACTGGAAAACCAATGCTGCTGGTTTTAAGG tctggtgccctcctactagacaatctgcgttctctgtttttgctccctagTCCATTTCTGTCATGGAGAGGAGATGTACAGCATGTCATTGTGAGGACTTCCCGAGCAGGCCATTTGAATGCTAATGACTGGGAAACAAATGCTGCTGGTTTTAAGGgtaagctattcttttctaatcacacattaacccaaacattaacccaattt Alignment from Exonerate_protein2genome TCCGTTTCTGACCTGGAGA---GACGTGCAGCATGTTATTGTCAGGACTTCCCGTGCGGGACATTTGAACGCTAATGACTGGAAAACCAATGCTGCTGGTTTTAAGG tctggtgccctcctactagacaatctgcgttctctgtttttgctccctagTCCATTTCTGTCATGGAGAGGAGATGTACAGCATGTCATTGTGAGGACTTCCCGAGCAGGCCATTTGAATGCTAATGACTGGGAAACAAATGCTGCTGGTTTTAAGGgtaagctattcttttctaatcacacattaacccaaacattaacccaattt Alignment from Exonerate_coding2genome TCCGTTTCTGACCTGGAGA---GACGTGCAGCATGTTATTGTCAGGACTTCCCGTGCGGGACATTTGAACGCTAATGACTGGAAAACCAATGCTGCTGGTTTTAAGG tctggtgccctcctactagacaatctgcgttctctgtttttgctccctagTCCATTTCTGTCATGGAGAGGAGATGTACAGCATGTCATTGTGAGGACTTCCCGAGCAGGCCATTTGAATGCTAATGACTGGGAAACAAATGCTGCTGGTTTTAAGGgtaagctattcttttctaatcacacattaacccaaacattaacccaattt Alignment from GeneWise TCCGTTTCTGACCTGGAGA---GACGTGCAGCATGTTATTGTCAGGACTTCCCGTGCGGGACATTTGAACGCTAATGACTGGAAAACCAATGCTGCTGGTTTTAAGG tctggtgccctcctactagacaatctgcgttctctgtttttgctccctagTCCATTTCTGTCATGGAGAGGAGATGTACAGCATGTCATTGTGAGGACTTCCCGAGCAGGCCATTTGAATGCTAATGACTGGGAAACAAATGCTGCTGGTTTTAAGGgtaagctattcttttctaatcacacattaacccaaacattaacccaattt #### Pcsk5_ID4300_7 --> 2 - 0 Original Alignment gtGTGAGAATGCTG---GATGGTGATGTCACTGACATGGTGGAGGCAAAGTCTGTCAGCTACAACCCACAGCATGTGCACATCTACAGTGCCAGCTGGGGACCAGATGACGATGGCAAGACTGTGGATGGGCCAGCTCCCCTCACCCGGCAAGCCTTTGAGAACGGCGTGAGAATG aaattgtcagtcagttagtgtagagcagttcttttcaccattacttttaggtGTGCGAATGTTGGGT------GGTGTCATTGATATGGTGGAAGCGAAGTCTGTGAGCTATAACCCACAGCATGTGCATATCTATAGTCCCAGTTGGGGGCCAGATGAG---GGCACAACTGTGGATGGGCCAGCCCCCCTTACATGGCAGGCCTTTGACAATGGTGTGAAAATGgtacagagttggaacttgtctaaaagcagtggtaactggggcaatacttg Alignment from CESAR gtGTGAGAATGCTGGATGGTGATGTCACTGACATGGTGGAGGCAAAGTCTGTCAGCTACAACCCACAGCATGTGCACATCTACAGTGCCAGCTGGGGACCAGATGACGATGGCAAGACTGTGGATGGGCCAGCTCCCCTCACCCGGCAAGCCTTTGAGAACGGCGTGAGAATG aaattgtcagtcagttagtgtagagcagttcttttcaccattacttttaggtGTGCGAATGTTG---GGTGGTGTCATTGATATGGTGGAAGCGAAGTCTGTGAGCTATAACCCACAGCATGTGCATATCTATAGTCCCAGTTGGGGGCCAGATGAG---GGCACAACTGTGGATGGGCCAGCCCCCCTTACATGGCAGGCCTTTGACAATGGTGTGAAAATGgtacagagttggaacttgtctaaaagcagtggtaactggggcaatacttg Alignment from Spaln_aa2Genome GTGTGAGAATGCTGGATGGTGATGTCACTGACATGGTGGAGGCAAAGTCTGTCAGCTACAACCCACAGCATGTGCACATCTACAGTGCCAGCTGGGGACCAGATGACGATGGCAAGACTGTGGATGGGCCAGCTCCCCTCACCCGGCAAGCCTTTGAGAACGGCGTGAGAATG aaattgtcagtcagttagtgtagagcagttcttttcaccattacttttagGTGTGCGAATGTTG---GGTGGTGTCATTGATATGGTGGAAGCGAAGTCTGTGAGCTATAACCCACAGCATGTGCATATCTATAGTCCCAGTTGGGGGCCA---GATGAGGGCACAACTGTGGATGGGCCAGCCCCCCTTACATGGCAGGCCTTTGACAATGGTGTGAAAATGgtacagagttggaacttgtctaaaagcagtggtaactggggcaatacttg Alignment from Spaln_nt2Genome GTGTGAGAATGCTGGATGGTGATGTCACTGACATGGTGGAGGCAAAGTCTGTCAGCTACAACCCACAGCATGTGCACATCTACAGTGCCAGCTGGGGACCAGATGACGATGGCAAGACTGTGGATGGGCCAGCTCCCCTCACCCGGCAAGCCTTTGAGAACGGCGTGAGAATG aaattgtcagtcagttagtgtagagcagttcttttcaccattacttttagGTGTGCGAATGTTG---GGTGGTGTCATTGATATGGTGGAAGCGAAGTCTGTGAGCTATAACCCACAGCATGTGCATATCTATAGTCCCAGTTGGGGGCCAGAT---GAGGGCACAACTGTGGATGGGCCAGCCCCCCTTACATGGCAGGCCTTTGACAATGGTGTGAAAATGgtacagagttggaacttgtctaaaagcagtggtaactggggcaatacttg Alignment from Pairagon GTGTGAGAATGCTGGATGGTGATGTCACTGACATGGTGGAGGCAAAGTCTGTCAGCTACAACCCACAGCATGTGCACATCTACAGTGCCAGCTGGGGACCAGATGACGATGGCAAGACTGTGGATGGGCCAGCTCCCCTCACCCGGCAAGCCTTTGAGAACGGCGTGAGAATG aaattgtcagtcagttagtgtagagcagttcttttcaccattacttttagGTGTGCGAATGTTG---GGTGGTGTCATTGATATGGTGGAAGCGAAGTCTGTGAGCTATAACCCACAGCATGTGCATATCTATAGTCCCAGTTGGGGGCCAGATGAG---GGCACAACTGTGGATGGGCCAGCCCCCCTTACATGGCAGGCCTTTGACAATGGTGTGAAAATGgtacagagttggaacttgtctaaaagcagtggtaactggggcaatacttg Alignment from Exonerate_protein2genome GTGTGAGAATGCTGGATGGTGATGTCACTGACATGGTGGAGGCAAAGTCTGTCAGCTACAACCCACAGCATGTGCACATCTACAGTGCCAGCTGGGGACCAGATGACGATGGCAAGACTGTGGATGGGCCAGCTCCCCTCACCCGGCAAGCCTTTGAGAACGGCGTGAGAATG aaattgtcagtcagttagtgtagagcagttcttttcaccattacttttagGTGTGCGAATGTTG---GGTGGTGTCATTGATATGGTGGAAGCGAAGTCTGTGAGCTATAACCCACAGCATGTGCATATCTATAGTCCCAGTTGGGGGCCA---GATGAGGGCACAACTGTGGATGGGCCAGCCCCCCTTACATGGCAGGCCTTTGACAATGGTGTGAAAATGgtacagagttggaacttgtctaaaagcagtggtaactggggcaatacttg Alignment from Exonerate_coding2genome GTGTGAGAATGCTGGATGGTGATGTCACTGACATGGTGGAGGCAAAGTCTGTCAGCTACAACCCACAGCATGTGCACATCTACAGTGCCAGCTGGGGACCAGATGACGATGGCAAGACTGTGGATGGGCCAGCTCCCCTCACCCGGCAAGCCTTTGAGAACGGCGTGAGAATG aaattgtcagtcagttagtgtagagcagttcttttcaccattacttttagGTGTGCGAATGTTG---GGTGGTGTCATTGATATGGTGGAAGCGAAGTCTGTGAGCTATAACCCACAGCATGTGCATATCTATAGTCCCAGTTGGGGGCCA---GATGAGGGCACAACTGTGGATGGGCCAGCCCCCCTTACATGGCAGGCCTTTGACAATGGTGTGAAAATGgtacagagttggaacttgtctaaaagcagtggtaactggggcaatacttg Alignment from GeneWise GTGTGAGAATGCTGGATGGTGATGTCACTGACATGGTGGAGGCAAAGTCTGTCAGCTACAACCCACAGCATGTGCACATCTACAGTGCCAGCTGGGGACCAGATGACGATGGCAAGACTGTGGATGGGCCAGCTCCCCTCACCCGGCAAGCCTTTGAGAACGGCGTGAGAATG aaattgtcagtcagttagtgtagagcagttcttttcaccattacttttagGTGTGCGAATGTTG---GGTGGTGTCATTGATATGGTGGAAGCGAAGTCTGTGAGCTATAACCCACAGCATGTGCATATCTATAGTCCCAGTTGGGGGCCAGAT---GAGGGCACAACTGTGGATGGGCCAGCCCCCCTTACATGGCAGGCCTTTGACAATGGTGTGAAAATGgtacagagttggaacttgtctaaaagcagtggtaactggggcaatacttg #### Pcsk5_ID4301_6 --> 1 - 1 Original Alignment gCATGGGACCCGCTGTGCCGGAGAAGTGGCAGCCACTGCAAACAACTCTCACTGCACTGTCGGGATCGCTTTCAACGCCAAGATTGGAg caggttctagaattgtgggtcttatatctgatcggtttctctccccacaggCATGGGACCTGCTGTGCCAGAGAGGTAGCAGCTACTGCCAACAACTCTCACTGCCCCGTCAGGATTAAATTCAATGCCAAGATAGGAggtacggggcaccttcgttcgagggtgtaggtaggcatcatctgggcttct Alignment from CESAR gCATGGGACCCGCTGTGCCGGAGAAGTGGCAGCCACTGCAAACAACTCTCACTGCACTGTCGGGATCGCTTTCAACGCCAAGATTGGAg caggttctagaattgtgggtcttatatctgatcggtttctctccccacaggCATGGGACCTGCTGTGCCAGAGAGGTAGCAGCTACTGCCAACAACTCTCACTGCCCCGTCAGGATTAAATTCAATGCCAAGATAGGAggtacggggcaccttcgttcgagggtgtaggtaggcatcatctgggcttct Alignment from Spaln_aa2Genome GCATGGGACCCGCTGTGCCGGAGAAGTGGCAGCCACTGCAAACAACTCTCACTGCACTGTCGGGATCGCTTTCAACGCCAAGATTGGAG caggttctagaattgtgggtcttatatctgatcggtttctctccccacagGCATGGGACCTGCTGTGCCAGAGAGGTAGCAGCTACTGCCAACAACTCTCACTGCCCCGTCAGGATTAAATTCAATGCCAAGATAGGAGgtacggggcaccttcgttcgagggtgtaggtaggcatcatctgggcttct Alignment from Spaln_nt2Genome GCATGGGACCCGCTGTGCCGGAGAAGTGGCAGCCACTGCAAACAACTCTCACTGCACTGTCGGGATCGCTTTCAACGCCAAGATTGGAG caggttctagaattgtgggtcttatatctgatcggtttctctccccacagGCATGGGACCTGCTGTGCCAGAGAGGTAGCAGCTACTGCCAACAACTCTCACTGCCCCGTCAGGATTAAATTCAATGCCAAGATAGGAGgtacggggcaccttcgttcgagggtgtaggtaggcatcatctgggcttct Alignment from Pairagon GCATGGGACCCGCTGTGCCGGAGAAGTGGCAGCCACTGCAAACAACTCTCACTGCACTGTCGGGATCGCTTTCAACGCCAAGATTGGAG caggttctagaattgtgggtcttatatctgatcggtttctctccccacagGCATGGGACCTGCTGTGCCAGAGAGGTAGCAGCTACTGCCAACAACTCTCACTGCCCCGTCAGGATTAAATTCAATGCCAAGATAGGAGgtacggggcaccttcgttcgagggtgtaggtaggcatcatctgggcttct Alignment from Exonerate_protein2genome GCATGGGACCCGCTGTGCCGGAGAAGTGGCAGCCACTGCAAACAACTCTCACTGCACTGTCGGGATCGCTTTCAACGCCAAGATTGGAG caggttctagaattgtgggtcttatatctgatcggtttctctccccacagGCATGGGACCTGCTGTGCCAGAGAGGTAGCAGCTACTGCCAACAACTCTCACTGCCCCGTCAGGATTAAATTCAATGCCAAGATAGGAGgtacggggcaccttcgttcgagggtgtaggtaggcatcatctgggcttct Alignment from Exonerate_coding2genome GCATGGGACCCGCTGTGCCGGAGAAGTGGCAGCCACTGCAAACAACTCTCACTGCACTGTCGGGATCGCTTTCAACGCCAAGATTGGAG caggttctagaattgtgggtcttatatctgatcggtttctctccccacagGCATGGGACCTGCTGTGCCAGAGAGGTAGCAGCTACTGCCAACAACTCTCACTGCCCCGTCAGGATTAAATTCAATGCCAAGATAGGAGgtacggggcaccttcgttcgagggtgtaggtaggcatcatctgggcttct Alignment from GeneWise GCATGGGACCCGCTGTGCCGGAGAAGTGGCAGCCACTGCAAACAACTCTCACTGCACTGTCGGGATCGCTTTCAACGCCAAGATTGGAG caggttctagaattgtgggtcttatatctgatcggtttctctccccacagGCATGGGACCTGCTGTGCCAGAGAGGTAGCAGCTACTGCCAACAACTCTCACTGCCCCGTCAGGATTAAATTCAATGCCAAGATAGGAGgtacggggcaccttcgttcgagggtgtaggtaggcatcatctgggcttct #### Pcsk5_ID4309_4 --> 0 - 0 Original Alignment CACTGCAGTGACAACACCCATCCTTGCCAGTCAGACATGAATATCGAAGGAGCCTGGAAGAGAGGCTACACGGGGAAGAATATCGTGGTGACTATCCTGGATGACGGCATCGAGAGAACCCACCCAGATCTGATGCAAAACTAC gagtccaaaactcctgagtcatcctaaacagggcctgttctttctcacagCATTGTAGTGACAACACCCATCCTTGCCAATCGGACATGATCATTGAGGGGGCCTGGAAACGAGGCTACACAGGAAAGAATGTTGTGGTGACTATCCTGGATGATGGTATTGAGAGAACCCACCCAGATCTGATGCAAAATTATgtgagtatattgggtaggtagaaacagtccacaccttttgggaggggatt Alignment from CESAR CACTGCAGTGACAACACCCATCCTTGCCAGTCAGACATGAATATCGAAGGAGCCTGGAAGAGAGGCTACACGGGGAAGAATATCGTGGTGACTATCCTGGATGACGGCATCGAGAGAACCCACCCAGATCTGATGCAAAACTAC gagtccaaaactcctgagtcatcctaaacagggcctgttctttctcacagCATTGTAGTGACAACACCCATCCTTGCCAATCGGACATGATCATTGAGGGGGCCTGGAAACGAGGCTACACAGGAAAGAATGTTGTGGTGACTATCCTGGATGATGGTATTGAGAGAACCCACCCAGATCTGATGCAAAATTATgtgagtatattgggtaggtagaaacagtccacaccttttgggaggggatt Alignment from Spaln_aa2Genome CACTGCAGTGACAACACCCATCCTTGCCAGTCAGACATGAATATCGAAGGAGCCTGGAAGAGAGGCTACACGGGGAAGAATATCGTGGTGACTATCCTGGATGACGGCATCGAGAGAACCCACCCAGATCTGATGCAAAACTAC gagtccaaaactcctgagtcatcctaaacagggcctgttctttctcacagCATTGTAGTGACAACACCCATCCTTGCCAATCGGACATGATCATTGAGGGGGCCTGGAAACGAGGCTACACAGGAAAGAATGTTGTGGTGACTATCCTGGATGATGGTATTGAGAGAACCCACCCAGATCTGATGCAAAATTATgtgagtatattgggtaggtagaaacagtccacaccttttgggaggggatt Alignment from Spaln_nt2Genome CACTGCAGTGACAACACCCATCCTTGCCAGTCAGACATGAATATCGAAGGAGCCTGGAAGAGAGGCTACACGGGGAAGAATATCGTGGTGACTATCCTGGATGACGGCATCGAGAGAACCCACCCAGATCTGATGCAAAACTAC gagtccaaaactcctgagtcatcctaaacagggcctgttctttctcacagCATTGTAGTGACAACACCCATCCTTGCCAATCGGACATGATCATTGAGGGGGCCTGGAAACGAGGCTACACAGGAAAGAATGTTGTGGTGACTATCCTGGATGATGGTATTGAGAGAACCCACCCAGATCTGATGCAAAATTATgtgagtatattgggtaggtagaaacagtccacaccttttgggaggggatt Alignment from Pairagon CACTGCAGTGACAACACCCATCCTTGCCAGTCAGACATGAATATCGAAGGAGCCTGGAAGAGAGGCTACACGGGGAAGAATATCGTGGTGACTATCCTGGATGACGGCATCGAGAGAACCCACCCAGATCTGATGCAAAACTAC gagtccaaaactcctgagtcatcctaaacagggcctgttctttctcacagCATTGTAGTGACAACACCCATCCTTGCCAATCGGACATGATCATTGAGGGGGCCTGGAAACGAGGCTACACAGGAAAGAATGTTGTGGTGACTATCCTGGATGATGGTATTGAGAGAACCCACCCAGATCTGATGCAAAATTATgtgagtatattgggtaggtagaaacagtccacaccttttgggaggggatt Alignment from Exonerate_protein2genome CACTGCAGTGACAACACCCATCCTTGCCAGTCAGACATGAATATCGAAGGAGCCTGGAAGAGAGGCTACACGGGGAAGAATATCGTGGTGACTATCCTGGATGACGGCATCGAGAGAACCCACCCAGATCTGATGCAAAACTAC gagtccaaaactcctgagtcatcctaaacagggcctgttctttctcacagCATTGTAGTGACAACACCCATCCTTGCCAATCGGACATGATCATTGAGGGGGCCTGGAAACGAGGCTACACAGGAAAGAATGTTGTGGTGACTATCCTGGATGATGGTATTGAGAGAACCCACCCAGATCTGATGCAAAATTATgtgagtatattgggtaggtagaaacagtccacaccttttgggaggggatt Alignment from Exonerate_coding2genome CACTGCAGTGACAACACCCATCCTTGCCAGTCAGACATGAATATCGAAGGAGCCTGGAAGAGAGGCTACACGGGGAAGAATATCGTGGTGACTATCCTGGATGACGGCATCGAGAGAACCCACCCAGATCTGATGCAAAACTAC gagtccaaaactcctgagtcatcctaaacagggcctgttctttctcacagCATTGTAGTGACAACACCCATCCTTGCCAATCGGACATGATCATTGAGGGGGCCTGGAAACGAGGCTACACAGGAAAGAATGTTGTGGTGACTATCCTGGATGATGGTATTGAGAGAACCCACCCAGATCTGATGCAAAATTATgtgagtatattgggtaggtagaaacagtccacaccttttgggaggggatt Alignment from GeneWise CACTGCAGTGACAACACCCATCCTTGCCAGTCAGACATGAATATCGAAGGAGCCTGGAAGAGAGGCTACACGGGGAAGAATATCGTGGTGACTATCCTGGATGACGGCATCGAGAGAACCCACCCAGATCTGATGCAAAACTAC gagtccaaaactcctgagtcatcctaaacagggcctgttctttctcacagCATTGTAGTGACAACACCCATCCTTGCCAATCGGACATGATCATTGAGGGGGCCTGGAAACGAGGCTACACAGGAAAGAATGTTGTGGTGACTATCCTGGATGATGGTATTGAGAGAACCCACCCAGATCTGATGCAAAATTATgtgagtatattgggtaggtagaaacagtccacaccttttgggaggggatt #### Pcsk5_ID4317_3 --> 0 - 0 Original Alignment GTGGAGTGGATCCAACAGCAAGTGGTGAAAAAAAGAACCAAGAGGGATTATGACCTCAGCCATGCCCAGTCAACCTACTTCAATGATCCCAAGTGGCCAAGTATGTGGTACATG tgcgttatagaggtaagtcaccatagtattttgtctcatgtgtttctcagGTGGAATGGATTCATCAACAGGTGGTGAAGAAGAGAACTAAAAGGGAATATGATCTTGACCATGCCCAGACTACCTATTTCAATGATCCTAAGTGGCCAAGTATGTGGTACATGgtaagcagaggtaaaggggtcctaaccagtcatgaggtcagttatgccca Alignment from CESAR GTGGAGTGGATCCAACAGCAAGTGGTGAAAAAAAGAACCAAGAGGGATTATGACCTCAGCCATGCCCAGTCAACCTACTTCAATGATCCCAAGTGGCCAAGTATGTGGTACATG tgcgttatagaggtaagtcaccatagtattttgtctcatgtgtttctcagGTGGAATGGATTCATCAACAGGTGGTGAAGAAGAGAACTAAAAGGGAATATGATCTTGACCATGCCCAGACTACCTATTTCAATGATCCTAAGTGGCCAAGTATGTGGTACATGgtaagcagaggtaaaggggtcctaaccagtcatgaggtcagttatgccca Alignment from Spaln_aa2Genome GTGGAGTGGATCCAACAGCAAGTGGTGAAAAAAAGAACCAAGAGGGATTATGACCTCAGCCATGCCCAGTCAACCTACTTCAATGATCCCAAGTGGCCAAGTATGTGGTACATG tgcgttatagaggtaagtcaccatagtattttgtctcatgtgtttctcagGTGGAATGGATTCATCAACAGGTGGTGAAGAAGAGAACTAAAAGGGAATATGATCTTGACCATGCCCAGACTACCTATTTCAATGATCCTAAGTGGCCAAGTATGTGGTACATGgtaagcagaggtaaaggggtcctaaccagtcatgaggtcagttatgccca Alignment from Spaln_nt2Genome GTGGAGTGGATCCAACAGCAAGTGGTGAAAAAAAGAACCAAGAGGGATTATGACCTCAGCCATGCCCAGTCAACCTACTTCAATGATCCCAAGTGGCCAAGTATGTGGTACATG tgcgttatagaggtaagtcaccatagtattttgtctcatgtgtttctcagGTGGAATGGATTCATCAACAGGTGGTGAAGAAGAGAACTAAAAGGGAATATGATCTTGACCATGCCCAGACTACCTATTTCAATGATCCTAAGTGGCCAAGTATGTGGTACATGgtaagcagaggtaaaggggtcctaaccagtcatgaggtcagttatgccca Alignment from Pairagon GTGGAGTGGATCCAACAGCAAGTGGTGAAAAAAAGAACCAAGAGGGATTATGACCTCAGCCATGCCCAGTCAACCTACTTCAATGATCCCAAGTGGCCAAGTATGTGGTACATG tgcgttatagaggtaagtcaccatagtattttgtctcatgtgtttctcagGTGGAATGGATTCATCAACAGGTGGTGAAGAAGAGAACTAAAAGGGAATATGATCTTGACCATGCCCAGACTACCTATTTCAATGATCCTAAGTGGCCAAGTATGTGGTACATGgtaagcagaggtaaaggggtcctaaccagtcatgaggtcagttatgccca Alignment from Exonerate_protein2genome GTGGAGTGGATCCAACAGCAAGTGGTGAAAAAAAGAACCAAGAGGGATTATGACCTCAGCCATGCCCAGTCAACCTACTTCAATGATCCCAAGTGGCCAAGTATGTGGTACATG tgcgttatagaggtaagtcaccatagtattttgtctcatgtgtttctcagGTGGAATGGATTCATCAACAGGTGGTGAAGAAGAGAACTAAAAGGGAATATGATCTTGACCATGCCCAGACTACCTATTTCAATGATCCTAAGTGGCCAAGTATGTGGTACATGgtaagcagaggtaaaggggtcctaaccagtcatgaggtcagttatgccca Alignment from Exonerate_coding2genome TTCATTTCAATGGAACCAAAGGTGGAGTGGATCCAACAGCAAGTGGTGAAAAAAAGAACCAAGAGGGATTATGACCTCAGCCATGCCCAGTCAACCTACTTCAATGATCCCAAGTGGCCAAGTATGTGGTACATG tgcgttatagaggtaagtcaccatagtatTTTGTCTCATGTGTTTCTCAGGTGGAATGGATTCATCAACAGGTGGTGAAGAAGAGAACTAAAAGGGAATATGATCTTGACCATGCCCAGACTACCTATTTCAATGATCCTAAGTGGCCAAGTATGTGGTACATGgtaagcagaggtaaaggggtcctaaccagtcatgaggtcagttatgccca Alignment from GeneWise GTGGAGTGGATCCAACAGCAAGTGGTGAAAAAAAGAACCAAGAGGGATTATGACCTCAGCCATGCCCAGTCAACCTACTTCAATGATCCCAAGTGGCCAAGTATGTGGTACATG tgcgttatagaggtaagtcaccatagtattttgtctcatgtgtttctcagGTGGAATGGATTCATCAACAGGTGGTGAAGAAGAGAACTAAAAGGGAATATGATCTTGACCATGCCCAGACTACCTATTTCAATGATCCTAAGTGGCCAAGTATGTGGTACATGgtaagcagaggtaaaggggtcctaaccagtcatgaggtcagttatgccca #### Pcx_ID552_2 --> 0 - 1 Original Alignment ATGCTGAAGTTCCAAACAGTTCGAGGGGGCCTGAGGCTCCTGGGTGTCCGCCGATCCTCCTCGGCCCCTGTTGCCTCCCCAAATGTCCGGCGTCTGGAGTATAAGCCTATCAAGAAAGTAATGGTGGCCAACAGAg tagtggctcagcagcccaagctatctgatcacctctgttcttccccgtagATGCTGAAGTTCCAAACAGTTCGAGGGGGCCTGAGGCTACTGGGTGTCCGTCGATCATCCTCTGCACCTATTGCCTCCCCAAATGTCCGGCATCTGGAATACAAGCCTGTCAAGAAAGTAATAGTAGCCAACCGAggtgagttagtacttgagttcaacttcttagttcctgctcagccacctcct Alignment from CESAR ATGCTGAAGTTCCAAACAGTTCGAGGGGGCCTGAGGCTCCTGGGTGTCCGCCGATCCTCCTCGGCCCCTGTTGCCTCCCCAAATGTCCGGCGTCTGGAGTATAAGCCTATCAAGAAAGTAATGGTGGCCAACAGAg tagtggctcagcagcccaagctatctgatcacctctgttcttccccgtagATGCTGAAGTTCCAAACAGTTCGAGGGGGCCTGAGGCTACTGGGTGTCCGTCGATCATCCTCTGCACCTATTGCCTCCCCAAATGTCCGGCATCTGGAATACAAGCCTGTCAAGAAAGTAATAGTAGCCAACCGAggtgagttagtacttgagttcaacttcttagttcctgctcagccacctcct Alignment from Spaln_aa2Genome ATGATGCTGAAGTTCCAAACAGTTCGAGGGGGCCTGAGGCTCCTGGGTGTCCGCCGATCCTCCTCGGCCCCTGTTGCCTCCCCAAATGTCCGGCGTCTGGAGTATAAGCCTATCAAGAAAGTAATGGTGGCCAACAGAG tagtggctcagcagcccaagctatctgatcacctctgttcttccccgtag---ATGCTGAAGTTCCAAACAGTTCGAGGGGGCCTGAGGCTACTGGGTGTCCGTCGATCATCCTCTGCACCTATTGCCTCCCCAAATGTCCGGCATCTGGAATACAAGCCTGTCAAGAAAGTAATAGTAGCCAACCGAGgtgagttagtacttgagttcaacttcttagttcctgctcagccacctcct Alignment from Spaln_nt2Genome ATGCTGAAGTTCCAAACAGTTCGAGGGGGCCTGAGGCTCCTGGGTGTCCGCCGATCCTCCTCGGCCCCTGTTGCCTCCCCAAATGTCCGGCGTCTGGAGTATAAGCCTATCAAGAAAGTAATGGTGGCCAACAGAG tagtggctcagcagcccaagctatctgatcacctctgttcttccccgtagATGCTGAAGTTCCAAACAGTTCGAGGGGGCCTGAGGCTACTGGGTGTCCGTCGATCATCCTCTGCACCTATTGCCTCCCCAAATGTCCGGCATCTGGAATACAAGCCTGTCAAGAAAGTAATAGTAGCCAACCGAGgtgagttagtacttgagttcaacttcttagttcctgctcagccacctcct Alignment from Pairagon ATGATGCTGAAGTTCCAAACAGTTCGAGGGGGCCTGAGGCTCCTGGGTGTCCGCCGATCCTCCTCGGCCCCTGTTGCCTCCCCAAATGTCCGGCGTCTGGAGTATAAGCCTATCAAGAAAGTAATGGTGGCCAACAGAG tagtggctcagcagcccaagctatctgatcacctctgttcttccccgTAGATGCTGAAGTTCCAAACAGTTCGAGGGGGCCTGAGGCTACTGGGTGTCCGTCGATCATCCTCTGCACCTATTGCCTCCCCAAATGTCCGGCATCTGGAATACAAGCCTGTCAAGAAAGTAATAGTAGCCAACCGAGgtgagttagtacttgagttcaacttcttagttcctgctcagccacctcct Alignment from Exonerate_protein2genome ATGCTGAAGTTCCAAACAGTTCGAGGGGGCCTGAGGCTCCTGGGTGTCCGCCGATCCTCCTCGGCCCCTGTTGCCTCCCCAAATGTCCGGCGTCTGGAGTATAAGCCTATCAAGAAAGTAATGGTGGCCAACAGAG tagtggctcagcagcccaagctatctgatcacctctgttcttccccgtagATGCTGAAGTTCCAAACAGTTCGAGGGGGCCTGAGGCTACTGGGTGTCCGTCGATCATCCTCTGCACCTATTGCCTCCCCAAATGTCCGGCATCTGGAATACAAGCCTGTCAAGAAAGTAATAGTAGCCAACCGAGgtgagttagtacttgagttcaacttcttagttcctgctcagccacctcct Alignment from Exonerate_coding2genome ATGCTGAAGTTCCAAACAGTTCGAGGGGGCCTGAGGCTCCTGGGTGTCCGCCGATCCTCCTCGGCCCCTGTTGCCTCCCCAAATGTCCGGCGTCTGGAGTATAAGCCTATCAAGAAAGTAATGGTGGCCAACAGAG tagtggctcagcagcccaagctatctgatcacctctgttcttccccgtagATGCTGAAGTTCCAAACAGTTCGAGGGGGCCTGAGGCTACTGGGTGTCCGTCGATCATCCTCTGCACCTATTGCCTCCCCAAATGTCCGGCATCTGGAATACAAGCCTGTCAAGAAAGTAATAGTAGCCAACCGAGgtgagttagtacttgagttcaacttcttagttcctgctcagccacctcct Alignment from GeneWise ATGATGCTGAAGTTCCAAACAGTTCGAGGGGGCCTGAGGCTCCTGGGTGTCCGCCGATCCTCCTCGGCCCCTGTTGCCTCCCCAAATGTCCGGCGTCTGGAGTATAAGCCTATCAAGAAAGTAATGGTGGCCAACAGAGGTGAGATT tagtggctcagcagcccaagctatctgatcacctctgttcttccccgtag---ATGCTGAAGTTCCAAACAGTTCGAGGGGGCCTGAGGCTACTGGGTGTCCGTCGATCATCCTCTGCACCTATTGCCTCCCCAAATGTCCGGCATCTGGAATACAAGCCTGTCAAGAAAGTAATAGTAGCCAACCGAGGTGAGTTAgtacttgagttcaacttcttagttcctgctcagccacctcct #### Pcx_ID557_7 --> 2 - 0 Original Alignment ggGACCAGTATGGGAACATCCTGCACCTGTACGAGCGAGACTGCTCCATCCAGCGTCGGCACCAGAAGGTGGTAGAGATCGCCCCTGCTACCCACCTGGATCCCCAACTTCGCTCACGTCTCACCAGTGACTCTGTCAAACTTGCCAAGCAG atatgcactacatcctagggaatttacaacagccactgcttcctccccaggaGACCAATTCGGAAACATACTACACTTGTATGAACAAGACTGTGCCATACAGCGCCGACACCAAGAGGTGGTGGAGATTGCTCCTGCTACACACCTCGACCCCCAACTCAGATCTCACCTGGCCAGTGACTCTGTCAAACTTGCCAAACAAgtaagctcatatccccctgaagagcgagtattatccagaaggtgcttcag Alignment from CESAR ggGACCAGTATGGGAACATCCTGCACCTGTACGAGCGAGACTGCTCCATCCAGCGTCGGCACCAGAAGGTGGTAGAGATCGCCCCTGCTACCCACCTGGATCCCCAACTTCGCTCACGTCTCACCAGTGACTCTGTCAAACTTGCCAAGCAG atatgcactacatcctagggaatttacaacagccactgcttcctccccaggaGACCAATTCGGAAACATACTACACTTGTATGAACAAGACTGTGCCATACAGCGCCGACACCAAGAGGTGGTGGAGATTGCTCCTGCTACACACCTCGACCCCCAACTCAGATCTCACCTGGCCAGTGACTCTGTCAAACTTGCCAAACAAgtaagctcatatccccctgaagagcgagtattatccagaaggtgcttcag Alignment from Spaln_aa2Genome GGGACCAGTATGGGAACATCCTGCACCTGTACGAGCGAGACTGCTCCATCCAGCGTCGGCACCAGAAGGTGGTAGAGATCGCCCCTGCTACCCACCTGGATCCCCAACTTCGCTCACGTCTCACCAGTGACTCTGTCAAACTTGCCAAGCAG atatgcactacatcctagggaatttacaacagccactgcttcctccccagGAGACCAATTCGGAAACATACTACACTTGTATGAACAAGACTGTGCCATACAGCGCCGACACCAAGAGGTGGTGGAGATTGCTCCTGCTACACACCTCGACCCCCAACTCAGATCTCACCTGGCCAGTGACTCTGTCAAACTTGCCAAACAAgtaagctcatatccccctgaagagcgagtattatccagaaggtgcttcag Alignment from Spaln_nt2Genome GGGACCAGTATGGGAACATCCTGCACCTGTACGAGCGAGACTGCTCCATCCAGCGTCGGCACCAGAAGGTGGTAGAGATCGCCCCTGCTACCCACCTGGATCCCCAACTTCGCTCACGTCTCACCAGTGACTCTGTCAAACTTGCCAAGCAG atatgcactacatcctagggaatttacaacagccactgcttcctccccagGAGACCAATTCGGAAACATACTACACTTGTATGAACAAGACTGTGCCATACAGCGCCGACACCAAGAGGTGGTGGAGATTGCTCCTGCTACACACCTCGACCCCCAACTCAGATCTCACCTGGCCAGTGACTCTGTCAAACTTGCCAAACAAgtaagctcatatccccctgaagagcgagtattatccagaaggtgcttcag Alignment from Pairagon GGGACCAGTATGGGAACATCCTGCACCTGTACGAGCGAGACTGCTCCATCCAGCGTCGGCACCAGAAGGTGGTAGAGATCGCCCCTGCTACCCACCTGGATCCCCAACTTCGCTCACGTCTCACCAGTGACTCTGTCAAACTTGCCAAGCAG atatgcactacatcctagggaatttacaacagccactgcttcctccccagGAGACCAATTCGGAAACATACTACACTTGTATGAACAAGACTGTGCCATACAGCGCCGACACCAAGAGGTGGTGGAGATTGCTCCTGCTACACACCTCGACCCCCAACTCAGATCTCACCTGGCCAGTGACTCTGTCAAACTTGCCAAACAAgtaagctcatatccccctgaagagcgagtattatccagaaggtgcttcag Alignment from Exonerate_protein2genome GGGACCAGTATGGGAACATCCTGCACCTGTACGAGCGAGACTGCTCCATCCAGCGTCGGCACCAGAAGGTGGTAGAGATCGCCCCTGCTACCCACCTGGATCCCCAACTTCGCTCACGTCTCACCAGTGACTCTGTCAAACTTGCCAAGCAG atatgcactacatcctagggaatttacaacagccactgcttcctccccagGAGACCAATTCGGAAACATACTACACTTGTATGAACAAGACTGTGCCATACAGCGCCGACACCAAGAGGTGGTGGAGATTGCTCCTGCTACACACCTCGACCCCCAACTCAGATCTCACCTGGCCAGTGACTCTGTCAAACTTGCCAAACAAgtaagctcatatccccctgaagagcgagtattatccagaaggtgcttcag Alignment from Exonerate_coding2genome GGGACCAGTATGGGAACATCCTGCACCTGTACGAGCGAGACTGCTCCATCCAGCGTCGGCACCAGAAGGTGGTAGAGATCGCCCCTGCTACCCACCTGGATCCCCAACTTCGCTCACGTCTCACCAGTGACTCTGTCAAACTTGCCAAGCAG atatgcactacatcctagggaatttacaacagccactgcttcctccccagGAGACCAATTCGGAAACATACTACACTTGTATGAACAAGACTGTGCCATACAGCGCCGACACCAAGAGGTGGTGGAGATTGCTCCTGCTACACACCTCGACCCCCAACTCAGATCTCACCTGGCCAGTGACTCTGTCAAACTTGCCAAACAAgtaagctcatatccccctgaagagcgagtattatccagaaggtgcttcag Alignment from GeneWise GGGACCAGTATGGGAACATCCTGCACCTGTACGAGCGAGACTGCTCCATCCAGCGTCGGCACCAGAAGGTGGTAGAGATCGCCCCTGCTACCCACCTGGATCCCCAACTTCGCTCACGTCTCACCAGTGACTCTGTCAAACTTGCCAAGCAG atatgcactacatcctagggaatttacaacagccactgcttcctccccagGAGACCAATTCGGAAACATACTACACTTGTATGAACAAGACTGTGCCATACAGCGCCGACACCAAGAGGTGGTGGAGATTGCTCCTGCTACACACCTCGACCCCCAACTCAGATCTCACCTGGCCAGTGACTCTGTCAAACTTGCCAAACAAgtaagctcatatccccctgaagagcgagtattatccagaaggtgcttcag #### Pcx_ID562_11 --> 0 - 1 Original Alignment ACCAACATCCCCTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCAGGCACAGTGGACACCCAGTTCATCGATGAGAACCCTGAGCTGTTCCAGCTTCGGCCTGCACAGAACCGGGCCCAGAAGTTGCTACATTACCTCg catgcagaaaacaagccaaattagctacctccctctctctcccttccaagAGCAACATCCCTTTCCTGCAGAATGTCCTTAACAACCAGCGGTTCCTGGCAGGCACTGTGGATACTCAGTTCATCGATGAGAACCCTGAATTGTTCCAATTAAGGCCTGCACAAAACCGGGCTCAGAAATTGTTACATTACCTTggtaagtttgcattcctttttctgaacatttttggcctcactggttttccc Alignment from CESAR ACCAACATCCCCTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCAGGCACAGTGGACACCCAGTTCATCGATGAGAACCCTGAGCTGTTCCAGCTTCGGCCTGCACAGAACCGGGCCCAGAAGTTGCTACATTACCTCg catgcagaaaacaagccaaattagctacctccctctctctcccttccaagAGCAACATCCCTTTCCTGCAGAATGTCCTTAACAACCAGCGGTTCCTGGCAGGCACTGTGGATACTCAGTTCATCGATGAGAACCCTGAATTGTTCCAATTAAGGCCTGCACAAAACCGGGCTCAGAAATTGTTACATTACCTTggtaagtttgcattcctttttctgaacatttttggcctcactggttttccc Alignment from Spaln_aa2Genome ACCAACATCCCCTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCAGGCACAGTGGACACCCAGTTCATCGATGAGAACCCTGAGCTGTTCCAGCTTCGGCCTGCACAGAACCGGGCCCAGAAGTTGCTACATTACCTCG catgcagaaaacaagccaaattagctacctccctctctctcccttccaagAGCAACATCCCTTTCCTGCAGAATGTCCTTAACAACCAGCGGTTCCTGGCAGGCACTGTGGATACTCAGTTCATCGATGAGAACCCTGAATTGTTCCAATTAAGGCCTGCACAAAACCGGGCTCAGAAATTGTTACATTACCTTGgtaagtttgcattcctttttctgaacatttttggcctcactggttttccc Alignment from Spaln_nt2Genome ACCAACATCCCCTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCAGGCACAGTGGACACCCAGTTCATCGATGAGAACCCTGAGCTGTTCCAGCTTCGGCCTGCACAGAACCGGGCCCAGAAGTTGCTACATTACCTCG catgcagaaaacaagccaaattagctacctccctctctctcccttccaagAGCAACATCCCTTTCCTGCAGAATGTCCTTAACAACCAGCGGTTCCTGGCAGGCACTGTGGATACTCAGTTCATCGATGAGAACCCTGAATTGTTCCAATTAAGGCCTGCACAAAACCGGGCTCAGAAATTGTTACATTACCTTGgtaagtttgcattcctttttctgaacatttttggcctcactggttttccc Alignment from Pairagon ACCAACATCCCCTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCAGGCACAGTGGACACCCAGTTCATCGATGAGAACCCTGAGCTGTTCCAGCTTCGGCCTGCACAGAACCGGGCCCAGAAGTTGCTACATTACCTCG catgcagaaaacaagccaaattagctacctccctctctctcccttccaagAGCAACATCCCTTTCCTGCAGAATGTCCTTAACAACCAGCGGTTCCTGGCAGGCACTGTGGATACTCAGTTCATCGATGAGAACCCTGAATTGTTCCAATTAAGGCCTGCACAAAACCGGGCTCAGAAATTGTTACATTACCTTGgtaagtttgcattcctttttctgaacatttttggcctcactggttttccc Alignment from Exonerate_protein2genome ACCAACATCCCCTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCAGGCACAGTGGACACCCAGTTCATCGATGAGAACCCTGAGCTGTTCCAGCTTCGGCCTGCACAGAACCGGGCCCAGAAGTTGCTACATTACCTCG catgcagaaaacaagccaaattagctacctccctctctctcccttccaagAGCAACATCCCTTTCCTGCAGAATGTCCTTAACAACCAGCGGTTCCTGGCAGGCACTGTGGATACTCAGTTCATCGATGAGAACCCTGAATTGTTCCAATTAAGGCCTGCACAAAACCGGGCTCAGAAATTGTTACATTACCTTGgtaagtttgcattcctttttctgaacatttttggcctcactggttttccc Alignment from Exonerate_coding2genome ACCAACATCCCCTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCAGGCACAGTGGACACCCAGTTCATCGATGAGAACCCTGAGCTGTTCCAGCTTCGGCCTGCACAGAACCGGGCCCAGAAGTTGCTACATTACCTCG catgcagaaaacaagccaaattagctacctccctctctctcccttccaagAGCAACATCCCTTTCCTGCAGAATGTCCTTAACAACCAGCGGTTCCTGGCAGGCACTGTGGATACTCAGTTCATCGATGAGAACCCTGAATTGTTCCAATTAAGGCCTGCACAAAACCGGGCTCAGAAATTGTTACATTACCTTGgtaagtttgcattcctttttctgaacatttttggcctcactggttttccc Alignment from GeneWise ACCAACATCCCCTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCAGGCACAGTGGACACCCAGTTCATCGATGAGAACCCTGAGCTGTTCCAGCTTCGGCCTGCACAGAACCGGGCCCAGAAGTTGCTACATTACCTCG catgcagaaaacaagccaaattagctacctccctctctctcccttccaagAGCAACATCCCTTTCCTGCAGAATGTCCTTAACAACCAGCGGTTCCTGGCAGGCACTGTGGATACTCAGTTCATCGATGAGAACCCTGAATTGTTCCAATTAAGGCCTGCACAAAACCGGGCTCAGAAATTGTTACATTACCTTGgtaagtttgcattcctttttctgaacatttttggcctcactggttttccc #### Pcx_ID564_13 --> 2 - 2 Original Alignment gcCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCaa atacagcatttctctccccaggggcacccctttccccctctgcaccgcaggaCCACCCCCACCTGGATTCAGGGACACTCTTTTGCGAGAGGGACCAGAGGGCTTTGCCCATGCTGCTCGGAATCATCACGGGCTGTTGTTGACAGACACCACATTCAGGGATGCTCACCAGTCTTTACTGGCCAGTCGTGTGCGCACGCATGATCTTAAGAAGATAGCATCCTATGTTGCTCATAACTTTAACAAACTCTCCAGTATGGAAAACTGGGGGGGTGCCACATTTGCTGTTGCAATGCACTTCCTGTATGAATGCCCTTGGCGGCGCCTCCAGAAGTTGAGGAAGCTAATCCCAAATATCCCATTCCAGATGCTACTCAGGGGAGCCAACGCTGTGGGATATACCAACTATCTTGACAATGTTGTCTTTaagtgagcttgtaaacatgctaggaccttgatgctggattgctggattcttg Alignment from CESAR gcCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCaa atacagcatttctctccccaggggcacccctttccccctctgcaccgcaggaCCACCCCCACCTGGATTCAGGGACACTCTTTTGCGAGAGGGACCAGAGGGCTTTGCCCATGCTGCTCGGAATCATCACGGGCTGTTGTTGACAGACACCACATTCAGGGATGCTCACCAGTCTTTACTGGCCAGTCGTGTGCGCACGCATGATCTTAAGAAGATAGCATCCTATGTTGCTCATAACTTTAACAAACTCTCCAGTATGGAAAACTGGGGGGGTGCCACATTTGCTGTTGCAATGCACTTCCTGTATGAATGCCCTTGGCGGCGCCTCCAGAAGTTGAGGAAGCTAATCCCAAATATCCCATTCCAGATGCTACTCAGGGGAGCCAACGCTGTGGGATATACCAACTATCTTGACAATGTTGTCTTTaagtgagcttgtaaacatgctaggaccttgatgctggattgctggattcttg Alignment from Spaln_aa2Genome GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA atacagcatttctctccccaggggcacccctttccccctctgcaccgcagGACCACCCCCACCTGGATTCAGGGACACTCTTTTGCGAGAGGGACCAGAGGGCTTTGCCCATGCTGCTCGGAATCATCACGGGCTGTTGTTGACAGACACCACATTCAGGGATGCTCACCAGTCTTTACTGGCCAGTCGTGTGCGCACGCATGATCTTAAGAAGATAGCATCCTATGTTGCTCATAACTTTAACAAACTCTCCAGTATGGAAAACTGGGGGGGTGCCACATTTGCTGTTGCAATGCACTTCCTGTATGAATGCCCTTGGCGGCGCCTCCAGAAGTTGAGGAAGCTAATCCCAAATATCCCATTCCAGATGCTACTCAGGGGAGCCAACGCTGTGGGATATACCAACTATCTTGACAATGTTGTCTTTAAgtgagcttgtaaacatgctaggaccttgatgctggattgctggattcttg Alignment from Spaln_nt2Genome GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA atacagcatttctctccccaggggcacccctttccccctctgcaccgcagGACCACCCCCACCTGGATTCAGGGACACTCTTTTGCGAGAGGGACCAGAGGGCTTTGCCCATGCTGCTCGGAATCATCACGGGCTGTTGTTGACAGACACCACATTCAGGGATGCTCACCAGTCTTTACTGGCCAGTCGTGTGCGCACGCATGATCTTAAGAAGATAGCATCCTATGTTGCTCATAACTTTAACAAACTCTCCAGTATGGAAAACTGGGGGGGTGCCACATTTGCTGTTGCAATGCACTTCCTGTATGAATGCCCTTGGCGGCGCCTCCAGAAGTTGAGGAAGCTAATCCCAAATATCCCATTCCAGATGCTACTCAGGGGAGCCAACGCTGTGGGATATACCAACTATCTTGACAATGTTGTCTTTAAgtgagcttgtaaacatgctaggaccttgatgctggattgctggattcttg Alignment from Pairagon GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA atacagcatttctctccccaggggcacccctttccccctctgcaccgcagGACCACCCCCACCTGGATTCAGGGACACTCTTTTGCGAGAGGGACCAGAGGGCTTTGCCCATGCTGCTCGGAATCATCACGGGCTGTTGTTGACAGACACCACATTCAGGGATGCTCACCAGTCTTTACTGGCCAGTCGTGTGCGCACGCATGATCTTAAGAAGATAGCATCCTATGTTGCTCATAACTTTAACAAACTCTCCAGTATGGAAAACTGGGGGGGTGCCACATTTGCTGTTGCAATGCACTTCCTGTATGAATGCCCTTGGCGGCGCCTCCAGAAGTTGAGGAAGCTAATCCCAAATATCCCATTCCAGATGCTACTCAGGGGAGCCAACGCTGTGGGATATACCAACTATCTTGACAATGTTGTCTTTAAgtgagcttgtaaacatgctaggaccttgatgctggattgctggattcttg Alignment from Exonerate_protein2genome GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA atacagcatttctctccccaggggcacccctttccccctctgcaccgcagGACCACCCCCACCTGGATTCAGGGACACTCTTTTGCGAGAGGGACCAGAGGGCTTTGCCCATGCTGCTCGGAATCATCACGGGCTGTTGTTGACAGACACCACATTCAGGGATGCTCACCAGTCTTTACTGGCCAGTCGTGTGCGCACGCATGATCTTAAGAAGATAGCATCCTATGTTGCTCATAACTTTAACAAACTCTCCAGTATGGAAAACTGGGGGGGTGCCACATTTGCTGTTGCAATGCACTTCCTGTATGAATGCCCTTGGCGGCGCCTCCAGAAGTTGAGGAAGCTAATCCCAAATATCCCATTCCAGATGCTACTCAGGGGAGCCAACGCTGTGGGATATACCAACTATCTTGACAATGTTGTCTTTAAgtgagcttgtaaacatgctaggaccttgatgctggattgctggattcttg Alignment from Exonerate_coding2genome CAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAGGCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA ATACAGCATTTCTCTCCCCAGGGGCACCCCTTTCCCCCTCTGCACCGCAGGACCACCCCCACCTGGATTCAGGGACACTCTTTTGCGAGAGGGACCAGAGGGCTTTGCCCATGCTGCTCGGAATCATCACGGGCTGTTGTTGACAGACACCACATTCAGGGATGCTCACCAGTCTTTACTGGCCAGTCGTGTGCGCACGCATGATCTTAAGAAGATAGCATCCTATGTTGCTCATAACTTTAACAAACTCTCCAGTATGGAAAACTGGGGGGGTGCCACATTTGCTGTTGCAATGCACTTCCTGTATGAATGCCCTTGGCGGCGCCTCCAGAAGTTGAGGAAGCTAATCCCAAATATCCCATTCCAGATGCTACTCAGGGGAGCCAACGCTGTGGGATATACCAACTATCTTGACAATGTTGTCTTTAAgtgagcttgtaaacatgctaggaccttgatgctggattgctggattcttg Alignment from GeneWise GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA atacagcatttctctccccaggggcacccctttccccctctgcaccgcagGACCACCCCCACCTGGATTCAGGGACACTCTTTTGCGAGAGGGACCAGAGGGCTTTGCCCATGCTGCTCGGAATCATCACGGGCTGTTGTTGACAGACACCACATTCAGGGATGCTCACCAGTCTTTACTGGCCAGTCGTGTGCGCACGCATGATCTTAAGAAGATAGCATCCTATGTTGCTCATAACTTTAACAAACTCTCCAGTATGGAAAACTGGGGGGGTGCCACATTTGCTGTTGCAATGCACTTCCTGTATGAATGCCCTTGGCGGCGCCTCCAGAAGTTGAGGAAGCTAATCCCAAATATCCCATTCCAGATGCTACTCAGGGGAGCCAACGCTGTGGGATATACCAACTATCTTGACAATGTTGTCTTTAAgtgagcttgtaaacatgctaggaccttgatgctggattgctggattcttg #### Pcx_ID566_15 --> 0 - 1 Original Alignment GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAg tctccatctttggatcatagctgaggatccatctcttgtgtcacctctagGGCATAGCAGGCCTGCTGAAGCCAGCAGCCTGTACAATGTTAGTTAGCTCCCTGTGGGACCGATCACCTGACCTTCCTCTTCACATCCATACCCACGATACTTTAGGAGCAGGTGTTGCAGCCACCCTAGCTTGCTCACAGGAAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCTGGTATGACCTTACAGCCAAGTATGGGGGCATTAGTAACCTGCACAAAGGGGACTCCCTCTGAAACAggtaccgaagaagagttgctacaataacataatactactcccatctaatgg Alignment from CESAR GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAg tctccatctttggatcatagctgaggatccatctcttgtgtcacctctagGGCATAGCAGGCCTGCTGAAGCCAGCAGCCTGTACAATGTTAGTTAGCTCCCTGTGGGACCGATCACCTGACCTTCCTCTTCACATCCATACCCACGATACTTTAGGAGCAGGTGTTGCAGCCACCCTAGCTTGCTCACAGGAAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCTGGTATGACCTTACAGCCAAGTATGGGGGCATTAGTAACCTGCACAAAGGGGACTCCCTCTGAAACAggtaccgaagaagagttgctacaataacataatactactcccatctaatgg Alignment from Spaln_aa2Genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG tctccatctttggatcatagctgaggatccatctcttgtgtcacctctagGGCATAGCAGGCCTGCTGAAGCCAGCAGCCTGTACAATGTTAGTTAGCTCCCTGTGGGACCGATCACCTGACCTTCCTCTTCACATCCATACCCACGATACTTTAGGAGCAGGTGTTGCAGCCACCCTAGCTTGCTCACAGGAAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCTGGTATGACCTTACAGCCAAGTATGGGGGCATTAGTAACCTGCACAAAGGGGACTCCCTCTGAAACAGgtaccgaagaagagttgctacaataacataatactactcccatctaatgg Alignment from Spaln_nt2Genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTGG---CAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG tctccatctttggatcatagctgaggatccatctcttgtgtcacctctagGGCATAGCAGGCCTGCTGAAGCCAGCAGCCTGTACAATGTTAGTTAGCTCCCTGTGGGACCGATCACCTGACCTTCCTCTTCACATCCATACCCACGATACTTTAGGAGCAGGTGTTGCAGCCACCCTAGCTTGCTCACAGGAAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCTGGTATGACCTTACAGCCAAGTATGGGGGCATTAGTAACCTGCACAAAGGGGACTCCCTCTGAAACAGgtaccgaagaagagttgctacaataacataatactactcccatctaatgg Alignment from Pairagon GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG tctccatctttggatcatagctgaggatccatctcttgtgtcacctctagGGCATAGCAGGCCTGCTGAAGCCAGCAGCCTGTACAATGTTAGTTAGCTCCCTGTGGGACCGATCACCTGACCTTCCTCTTCACATCCATACCCACGATACTTTAGGAGCAGGTGTTGCAGCCACCCTAGCTTGCTCACAGGAAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCTGGTATGACCTTACAGCCAAGTATGGGGGCATTAGTAACCTGCACAAAGGGGACTCCCTCTGAAACAGgtaccgaagaagagttgctacaataacataatactactcccatctaatgg Alignment from Exonerate_protein2genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG tctccatctttggatcatagctgaggatccatctcttgtgtcacctctagGGCATAGCAGGCCTGCTGAAGCCAGCAGCCTGTACAATGTTAGTTAGCTCCCTGTGGGACCGATCACCTGACCTTCCTCTTCACATCCATACCCACGATACTTTAGGAGCAGGTGTTGCAGCCACCCTAGCTTGCTCACAGGAAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCTGGTATGACCTTACAGCCAAGTATGGGGGCATTAGTAACCTGCACAAAGGGGACTCCCTCTGAAACAGgtaccgaagaagagttgctacaataacataatactactcccatctaatgg Alignment from Exonerate_coding2genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG tctccatctttggatcatagctgaggatccatctcttgtgtcacctctagGGCATAGCAGGCCTGCTGAAGCCAGCAGCCTGTACAATGTTAGTTAGCTCCCTGTGGGACCGATCACCTGACCTTCCTCTTCACATCCATACCCACGATACTTTAGGAGCAGGTGTTGCAGCCACCCTAGCTTGCTCACAGGAAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCTGGTATGACCTTACAGCCAAGTATGGGGGCATTAGTAACCTGCACAAAGGGGACTCCCTCTGAAACAGgtaccgaagaagagttgctacaataacataatactactcccatctaatgg Alignment from GeneWise GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG tctccatctttggatcatagctgaggatccatctcttgtgtcacctctagGGCATAGCAGGCCTGCTGAAGCCAGCAGCCTGTACAATGTTAGTTAGCTCCCTGTGGGACCGATCACCTGACCTTCCTCTTCACATCCATACCCACGATACTTTAGGAGCAGGTGTTGCAGCCACCCTAGCTTGCTCACAGGAAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCTGGTATGACCTTACAGCCAAGTATGGGGGCATTAGTAACCTGCACAAAGGGGACTCCCTCTGAAACAGgtaccgaagaagagttgctacaataacataatactactcccatctaatgg #### Pcx_ID567_16 --> 2 - 0 Original Alignment agGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG ttgttcccctttcaactacttttgtacattatggtgtcttttgtatacagctTTGCCGCTGGAACGAGTATTTGACTATAGTGGGTACTGGGAAGGTTCTAGGGGGTTGTAT------TTTGATTGCATTGCCTCTATGAAAGCTGGTAACTTGGATCTATACAAGAATGAGGTACCAGGTGGACAATACACCAATCAGCATTTCCCAGCCCGT------AGACTTGGTTCAAAGTTCAAAGCAGTTAAGAAAGCTTATGTGGAGGCTAATCAAATGCTGGGGGACCTTATTGAAgtaggataaattgccaggtacttctctggtgcacttgcagaagcctggtg Alignment from CESAR agGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG ttgttcccctttcaactacttttgtacattatggtgtcttttgtatacagctTTGCCGCTGGAACGAGTATTTGACTATAGTGGGTACTGGGAAGGTTCTAGGGGGTTGTAT------TTTGATTGCATTGCCTCTATGAAAGCTGGTAACTTGGATCTATACAAGAATGAGGTACCAGGTGGACAATACACCAATCAGCATTTCCCAGCCCGTAGA------CTTGGTTCAAAGTTCAAAGCAGTTAAGAAAGCTTATGTGGAGGCTAATCAAATGCTGGGGGACCTTATTGAAgtaggataaattgccaggtacttctctggtgcacttgcagaagccttgct Alignment from Spaln_aa2Genome AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG ttgttcccctttcaactacttttgtacattatggtgtcttttgtatacagCTTTGCCGCTGGAACGAGTATTTGACTATAGTGGGTACTGGGAAGGTTCTAGGGGGTTGTAT------TTTGATTGCATTGCCTCTATGAAAGCTGGTAACTTGGATCTATACAAGAATGAGGTACCAGGTGGACAATACACCAATCAGCATTTCCCAGCCCGT------AGACTTGGTTCAAAGTTCAAAGCAGTTAAGAAAGCTTATGTGGAGGCTAATCAAATGCTGGGGGACCTTATTGAAgtaggataaattgccaggtacttctctggtgcacttgcagaagcctggtg Alignment from Spaln_nt2Genome AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG ttgttcccctttcaactacttttgtacattatggtgtcttttgtatacagCTTTGCCGCTGGAACGAGTATTTGACTATAGTGGGTACTGGGAAGGTTCTAGGGGGTTGTA------TTTTGATTGCATTGCCTCTATGAAAGCTGGTAACTTGGATCTATACAAGAATGAGGTACCAGGTGGACAATACACCAATCAGCATTTCCCAGCCCGTA------GACTTGGTTCAAAGTTCAAAGCAGTTAAGAAAGCTTATGTGGAGGCTAATCAAATGCTGGGGGACCTTATTGAAgtaggataaattgccaggtacttctctggtgcacttgcagaagcctggtg Alignment from Pairagon AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG ttgttcccctttcaactacttttgtacattatggtgtcttttgtatacagCTTTGCCGCTGGAACGAGTATTTGACTATAGTGGGTACTGGGAAGGTTCTAGGGGGTTGTA------TTTTGATTGCATTGCCTCTATGAAAGCTGGTAACTTGGATCTATACAAGAATGAGGTACCAGGTGGACAATACACCAATCAGCATTTCCCAGCCCGTA------GACTTGGTTCAAAGTTCAAAGCAGTTAAGAAAGCTTATGTGGAGGCTAATCAAATGCTGGGGGACCTTATTGAAgtaggataaattgccaggtacttctctggtgcacttgcagaagcctggtg Alignment from Exonerate_protein2genome AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG ttgttcccctttcaactacttttgtacattatggtgtcttttgtatacagCTTTGCCGCTGGAACGAGTATTTGACTATAGTGGGTACTGGGAAGGTTCTAGGGGGTTGTAT------TTTGATTGCATTGCCTCTATGAAAGCTGGTAACTTGGATCTATACAAGAATGAGGTACCAGGTGGACAATACACCAATCAGCATTTCCCAGCCCGTAGA------CTTGGTTCAAAGTTCAAAGCAGTTAAGAAAGCTTATGTGGAGGCTAATCAAATGCTGGGGGACCTTATTGAAgtaggataaattgccaggtacttctctggtgcacttgcagaagcctggtg Alignment from Exonerate_coding2genome AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG ttgttcccctttcaactacttttgtacattatggtgtcttttgtatacagCTTTGCCGCTGGAACGAGTATTTGACTATAGTGGGTACTGGGAAGGTTCTAGGGGGTTGTAT------TTTGATTGCATTGCCTCTATGAAAGCTGGTAACTTGGATCTATACAAGAATGAGGTACCAGGTGGACAATACACCAATCAGCATTTCCCAGCCCGTAGA------CTTGGTTCAAAGTTCAAAGCAGTTAAGAAAGCTTATGTGGAGGCTAATCAAATGCTGGGGGACCTTATTGAAgtaggataaattgccaggtacttctctggtgcacttgcagaagcctggtg Alignment from GeneWise AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG ttgttcccctttcaactacttttgtacattatggtgtcttttgtatacagCTTTGCCGCTGGAACGAGTATTTGACTATAGTGGGTACTGGGAAGGTTCTAGGGGGTTGTAT------TTTGATTGCATTGCCTCTATGAAAGCTGGTAACTTGGATCTATACAAGAATGAGGTACCAGGTGGACAATACACCAATCAGCATTTCCCAGCCCGTAGA------CTTGGTTCAAAGTTCAAAGCAGTTAAGAAAGCTTATGTGGAGGCTAATCAAATGCTGGGGGACCTTATTGAAgtaggataaattgccaggtacttctctggtgcacttgcagaagcctggtg #### Pdcd11_ID10117_11 --> 0 - 0 Original Alignment GGCACAGTGCTGGCCATAAAGCCATTTGGGATCCTGGTGAAGGTGGGTGAGCAGATAAAAGGCCTGGTGCCCTCCATGCACCTGGCTGACATCATGATGAAGAACCCAGAGAAGAAGTACAGCCCAGGGGATGAGGTCAAGTGCAGG taaaaaactgtgttactactcttatgagctgctttatacttggctcctagGGCACAGTGCTAGCCATCAAGCCCTTTGGTATCCTTGTGAAAGTGGGTGAGCAGATCAAAGGTCTGGTGCCCTCCATGCACCTAGCTGATATCATGACAAAAAATCCAGAAAAAAAGTACAGCCCAGGGGATGAAGTCAAATGCAGGgtgagaatctacattagtgcttaaaggttgacatcatccagattattgct Alignment from CESAR GGCACAGTGCTGGCCATAAAGCCATTTGGGATCCTGGTGAAGGTGGGTGAGCAGATAAAAGGCCTGGTGCCCTCCATGCACCTGGCTGACATCATGATGAAGAACCCAGAGAAGAAGTACAGCCCAGGGGATGAGGTCAAGTGCAGG taaaaaactgtgttactactcttatgagctgctttatacttggctcctagGGCACAGTGCTAGCCATCAAGCCCTTTGGTATCCTTGTGAAAGTGGGTGAGCAGATCAAAGGTCTGGTGCCCTCCATGCACCTAGCTGATATCATGACAAAAAATCCAGAAAAAAAGTACAGCCCAGGGGATGAAGTCAAATGCAGGgtgagaatctacattagtgcttaaaggttgacatcatccagattattgct Alignment from Spaln_aa2Genome GGCACAGTGCTGGCCATAAAGCCATTTGGGATCCTGGTGAAGGTGGGTGAGCAGATAAAAGGCCTGGTGCCCTCCATGCACCTGGCTGACATCATGATGAAGAACCCAGAGAAGAAGTACAGCCCAGGGGATGAGGTCAAGTGCAGG taaaaaactgtgttactactcttatgagctgctttatacttggctcctagGGCACAGTGCTAGCCATCAAGCCCTTTGGTATCCTTGTGAAAGTGGGTGAGCAGATCAAAGGTCTGGTGCCCTCCATGCACCTAGCTGATATCATGACAAAAAATCCAGAAAAAAAGTACAGCCCAGGGGATGAAGTCAAATGCAGGgtgagaatctacattagtgcttaaaggttgacatcatccagattattgct Alignment from Spaln_nt2Genome GGCACAGTGCTGGCCATAAAGCCATTTGGGATCCTGGTGAAGGTGGGTGAGCAGATAAAAGGCCTGGTGCCCTCCATGCACCTGGCTGACATCATGATGAAGAACCCAGAGAAGAAGTACAGCCCAGGGGATGAGGTCAAGTGCAGG taaaaaactgtgttactactcttatgagctgctttatacttggctcctagGGCACAGTGCTAGCCATCAAGCCCTTTGGTATCCTTGTGAAAGTGGGTGAGCAGATCAAAGGTCTGGTGCCCTCCATGCACCTAGCTGATATCATGACAAAAAATCCAGAAAAAAAGTACAGCCCAGGGGATGAAGTCAAATGCAGGgtgagaatctacattagtgcttaaaggttgacatcatccagattattgct Alignment from Pairagon GGCACAGTGCTGGCCATAAAGCCATTTGGGATCCTGGTGAAGGTGGGTGAGCAGATAAAAGGCCTGGTGCCCTCCATGCACCTGGCTGACATCATGATGAAGAACCCAGAGAAGAAGTACAGCCCAGGGGATGAGGTCAAGTGCAGG taaaaaactgtgttactactcttatgagctgctttatacttggctcctagGGCACAGTGCTAGCCATCAAGCCCTTTGGTATCCTTGTGAAAGTGGGTGAGCAGATCAAAGGTCTGGTGCCCTCCATGCACCTAGCTGATATCATGACAAAAAATCCAGAAAAAAAGTACAGCCCAGGGGATGAAGTCAAATGCAGGgtgagaatctacattagtgcttaaaggttgacatcatccagattattgct Alignment from Exonerate_protein2genome GGCACAGTGCTGGCCATAAAGCCATTTGGGATCCTGGTGAAGGTGGGTGAGCAGATAAAAGGCCTGGTGCCCTCCATGCACCTGGCTGACATCATGATGAAGAACCCAGAGAAGAAGTACAGCCCAGGGGATGAGGTCAAGTGCAGGGTTTTGCTCTGTGACCCTGAAGCCAAG taaaaaactgtgttactactcttatgagctgctttatacttggctcctagGGCACAGTGCTAGCCATCAAGCCCTTTGGTATCCTTGTGAAAGTGGGTGAGCAGATCAAAGGTCTGGTGCCCTCCATGCACCTAGCTGATATCATGACAAAAAATCCAGAAAAAAAGTACAGCCCAGGGGATGAAGTCAAATGCAGGGTGAGAATCTACATTAGTGCTTAAAGGttgacatcatccagattattgct Alignment from Exonerate_coding2genome taaaaaactgtgttactactcttatgagctgctttatacttggctcctagggcacagtgctagccatcaagccctttggtatccttgtgaaagtgggtgagcagatcaaaggtctggtgccctccatgcacctagctgatatcatgacaaaaaatccagaaaaaaagtacagcccaggggatgaagtcaaatgcagggtgagaatctacattagtgcttaaaggttgacatcatccagattattgct Alignment from GeneWise GGCACAGTGCTGGCCATAAAGCCATTTGGGATCCTGGTGAAGGTGGGTGAGCAGATAAAAGGCCTGGTGCCCTCCATGCACCTGGCTGACATCATGATGAAGAACCCAGAGAAGAAGTACAGCCCAGGGGATGAGGTCAAGTGCAGG taaaaaactgtgttactactcttatgagctgctttatacttggctcctagGGCACAGTGCTAGCCATCAAGCCCTTTGGTATCCTTGTGAAAGTGGGTGAGCAGATCAAAGGTCTGGTGCCCTCCATGCACCTAGCTGATATCATGACAAAAAATCCAGAAAAAAAGTACAGCCCAGGGGATGAAGTCAAATGCAGGgtgagaatctacattagtgcttaaaggttgacatcatccagattattgct #### Pdcd11_ID10122_16 --> 0 - 1 Original Alignment ATCATGAGTGACAAGTTCGTAACCACTCCAAGTGAACACTTTGTGGAGGGTCAGACAGTCGTTGCTAAGGTGACCAATGTGGATGAATCGAAGCAGAGGATGCTGCTGTCTCTGCGGCTGTCAGACTGCAGTCTGGGG---GATTCGGCCAGCACCAGCTTCCTCCTCCTGTGCCAGTGCCTGGAAGAGCTGCAGGGCATTCGCAGCCTCATGAGCAACCAAg ctctattggatgtgattctttcctatgtaattctaccttatttttctcagATCATGAGTGACAGATCTGTTACTACTCCAGGTGAACATATTGTGGAAGGGCAGACAGTGATTTCAAGAGTGACTAATGTGGATGAGACAAAGGAGAGAATGTTATTGTCATTCCAGCTGACCCACTGTAGTTTGGGTGGAGAT---------------TTCCTTCTGCTGTGG---TGTCTAGAAGAGATACAGGGGATTAGTAGTCTAATGAGCACCCAAggtaatttttatgctcagggtactagttattgcctcattgtatgcttgact Alignment from CESAR ATCATGAGTGACAAGTTCGTAACCACTCCAAGTGAACACTTTGTGGAGGGTCAGACAGTCGTTGCTAAGGTGACCAATGTGGATGAATCGAAGCAGAGGATGCTGCTGTCTCTGCGGCTGTCAGACTGCAGTCTG---GGGGATTCGGCCAGCACCAGCTTCCTCCTCCTGTGCCAGTGCCTGGAAGAGCTGCAGGGCATTCGCAGCCTCATGAGCAACCAAg ctctattggatgtgattctttcctatgtaattctaccttatttttctcagATCATGAGTGACAGATCTGTTACTACTCCAGGTGAACATATTGTGGAAGGGCAGACAGTGATTTCAAGAGTGACTAATGTGGATGAGACAAAGGAGAGAATGTTATTGTCATTCCAGCTGACCCACTGTAGTTTGGGTGGAGAT---------------TTCCTTCTGCTGTGG---TGTCTAGAAGAGATACAGGGGATTAGTAGTCTAATGAGCACCCAAggtaatttttatgctcagggtactagttattgcctcattgtatgcttgact Alignment from Spaln_aa2Genome ATCATGAGTGACAAGTTCGTAACCACTCCAAGTGAACACTTTGTGGAGGGTCAGACAGTCGTTGCTAAGGTGACCAATGTGGATGAATCGAAGCAGAGGATGCTGCTGTCTCTGCGGCTGTCAGACTGCAGTCTGGGGGATTCGGCCAGCACCAGCTTCCTCCTCCTGTGCCAGTGCCTGGAAGAGCTGCAGGGCATTCGCAGCCTCATGAGCAACCAAG ctctattggatgtgattctttcctatgtaattctaccttatttttctcagATCATGAGTGACAGATCTGTTACTACTCCAGGTGAACATATTGTGGAAGGGCAGACAGTGATTTCAAGAGTGACTAATGTGGATGAGACAAAGGAGAGAATGTTATTGTCATTCCAGCTGACCCACTGTAGTTTGGGTGGA------------GATTTCCTTCTGCTGTGG---TGTCTAGAAGAGATACAGGGGATTAGTAGTCTAATGAGCACCCAAGgtaatttttatgctcagggtactagttattgcctcattgtatgcttgact Alignment from Spaln_nt2Genome ATCATGAGTGACAAGTTCGTAACCACTCCAAGTGAACACTTTGTGGAGGGTCAGACAGTCGTTGCTAAGGTGACCAATGTGGATGAATCGAAGCAGAGGATGCTGCTGTCTCTGCGGCTGTCAGACTGCAGTCTGG GGGATTC ctctattggatgtgattctttcctatgtaattctaccttatttttctcagATCATGAGTGACAGATCTGTTACTACTCCAGGTGAACATATTGTGGAAGGGCAGACAGTGATTTCAAGAGTGACTAATGTGGATGAGACAAAGGAGAGAATGTTATTGTCATTCCAGCTGACCCACTGTAGTTTGGgtggagatttccttctgctgtggtgtctagaagagatacaggggattagtagtctaatgagcacccaaggtaatttttatgctcagGGTACTAgttattgcctcattgtatgcttgact Alignment from Pairagon ATCATGAGTGACAAGTTCGTAACCACTCCAAGTGAACACTTTGTGGAGGGTCAGACAGTCGTTGCTAAGGTGACCAATGTGGATGAATCGAAGCAGAGGATGCTGCTGTCTCTGCGGCTGTCAGACTGCAGTCTGG ctctattggatgtgattctttcctatgtaattctaccttatttttctcagATCATGAGTGACAGATCTGTTACTACTCCAGGTGAACATATTGTGGAAGGGCAGACAGTGATTTCAAGAGTGACTAATGTGGATGAGACAAAGGAGAGAATGTTATTGTCATTCCAGCTGACCCACTGTAGTTTGGgtggagatttccttctgctgtggtgtctagaagagatacaggggattagtagtctaatgagcacccaaggtaatttttatgctcagggtactagttattgcctcattgtatgcttgact Alignment from Exonerate_protein2genome ATCATGAGTGACAAGTTCGTAACCACTCCAAGTGAACACTTTGTGGAGGGTCAGACAGTCGTTGCTAAGGTGACCAATGTGGATGAATCGAAGCAGAGGATGCTGCTGTCTCTGCGGCTGTCAGACTGCAGTCTGGGGGATTCGGCCAGCACCAGCTTCCTCCTCCTGTGCCAGTGCCTGGAAGAGCTGCAGGGCATTCGCAGCCTCATGAGCAACCAAG ctctattggatgtgattctttcctatgtaattctaccttatttttctcagATCATGAGTGACAGATCTGTTACTACTCCAGGTGAACATATTGTGGAAGGGCAGACAGTGATTTCAAGAGTGACTAATGTGGATGAGACAAAGGAGAGAATGTTATTGTCATTCCAGCTGACCCACTGTAGTTTGGGTGGA------------GATTTCCTTCTGCTG---TGGTGTCTAGAAGAGATACAGGGGATTAGTAGTCTAATGAGCACCCAAGgtaatttttatgctcagggtactagttattgcctcattgtatgcttgact Alignment from Exonerate_coding2genome ATCATGAGTGACAAGTTCGTAACCACTCCAAGTGAACACTTTGTGGAGGGTCAGACAGTCGTTGCTAAGGTGACCAATGTGGATGAATCGAAGCAGAGGATGCTGCTGTCTCTGCGGCTGTCAGACTGCAGTCTGGGGGATTCGGCCAGCACCAGCTTCCTCCTCCTGTGCCAGTGCCTGGAAGAGCTGCAGGGCATTCGCAGCCTCATGAGCAACCAAG ctctattggatgtgattctttcctatgtaattctaccttatttttctcagATCATGAGTGACAGATCTGTTACTACTCCAGGTGAACATATTGTGGAAGGGCAGACAGTGATTTCAAGAGTGACTAATGTGGATGAGACAAAGGAGAGAATGTTATTGTCATTCCAGCTGACCCACTGTAGTTTGGGTGGA------------GATTTCCTTCTGCTG---TGGTGTCTAGAAGAGATACAGGGGATTAGTAGTCTAATGAGCACCCAAGgtaatttttatgctcagggtactagttattgcctcattgtatgcttgact Alignment from GeneWise ATCATGAGTGACAAGTTCGTAACCACTCCAAGTGAACACTTTGTGGAGGGTCAGACAGTCGTTGCTAAGGTGACCAATGTGGATGAATCGAAGCAGAGGATGCTGCTGTCTCTGCGGCTGTCAGACTGCAGTCTGGGGGATTCGGCCAGCACCAGCTTCCTCCTCCTGTGCCAGTGCCTGGAAGAGCTGCAGGGCATTCGCAGCCTCATGAGCAACCAAG ctctattggatgtgattctttcctatgtaattctaccttatttttctcagATCATGAGTGACAGATCTGTTACTACTCCAGGTGAACATATTGTGGAAGGGCAGACAGTGATTTCAAGAGTGACTAATGTGGATGAGACAAAGGAGAGAATGTTATTGTCATTCCAGCTGACCCACTGTAGTTTGGGTGGAGAT------------TTCCTTCTGCTG---TGGTGTCTAGAAGAGATACAGGGGATTAGTAGTCTAATGAGCACCCAAGgtaatttttatgctcagggtactagttattgcctcattgtatgcttgact #### Pdcd11_ID10129_23 --> 0 - 1 Original Alignment GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAg aaccccatgctcactaacatatccttgttgcccactgtgctcccacccagGTTCTCAAACATCCAGACAGAAAGTTCCAAGTAGGGCAGGCCATTGAGGCTACAGTTGTTGACCCGGAAGTCCCTAGGGCTTCGCTATGTCTGTCACTCATAggtgagtacttatttgggttatgaaatgggatggcagtgaagatctttttt Alignment from CESAR GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAg aaccccatgctcactaacatatccttgttgcccactgtgctcccacccagGTTCTCAAACATCCAGACAGAAAGTTCCAAGTAGGGCAGGCCATTGAGGCTACAGTTGTTGACCCGGAAGTCCCTAGGGCTTCGCTATGTCTGTCACTCATAggtgagtacttatttgggttatgaaatgggatggcagtgaagatctttttt Alignment from Spaln_aa2Genome GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG aaccccatgctcactaacatatccttgttgcccactgtgctcccacccagGTTCTCAAACATCCAGACAGAAAGTTCCAAGTAGGGCAGGCCATTGAGGCTACAGTTGTTGACCCGGAAGTCCCTAGGGCTTCGCTATGTCTGTCACTCATAGgtgagtacttatttgggttatgaaatgggatggcagtgaagatctttttt Alignment from Spaln_nt2Genome GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG aaccccatgctcactaacatatccttgttgcccactgtgctcccacccagGTTCTCAAACATCCAGACAGAAAGTTCCAAGTAGGGCAGGCCATTGAGGCTACAGTTGTTGACCCGGAAGTCCCTAGGGCTTCGCTATGTCTGTCACTCATAGgtgagtacttatttgggttatgaaatgggatggcagtgaagatctttttt Alignment from Pairagon GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG aaccccatgctcactaacatatccttgttgcccactgtgctcccacccagGTTCTCAAACATCCAGACAGAAAGTTCCAAGTAGGGCAGGCCATTGAGGCTACAGTTGTTGACCCGGAAGTCCCTAGGGCTTCGCTATGTCTGTCACTCATAGgtgagtacttatttgggttatgaaatgggatggcagtgaagatctttttt Alignment from Exonerate_protein2genome GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG aaccccatgctcactaacatatccttgttgcccactgtgctcccacccagGTTCTCAAACATCCAGACAGAAAGTTCCAAGTAGGGCAGGCCATTGAGGCTACAGTTGTTGACCCGGAAGTCCCTAGGGCTTCGCTATGTCTGTCACTCATAGgtgagtacttatttgggttatgaaatgggatggcagtgaagatctttttt Alignment from Exonerate_coding2genome GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG aaccccatgctcactaacatatccttgttgcccactgtgctcccacccagGTTCTCAAACATCCAGACAGAAAGTTCCAAGTAGGGCAGGCCATTGAGGCTACAGTTGTTGACCCGGAAGTCCCTAGGGCTTCGCTATGTCTGTCACTCATAGgtgagtacttatttgggttatgaaatgggatggcagtgaagatctttttt Alignment from GeneWise GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG aaccccatgctcactaacatatccttgttgcccactgtgctcccacccagGTTCTCAAACATCCAGACAGAAAGTTCCAAGTAGGGCAGGCCATTGAGGCTACAGTTGTTGACCCGGAAGTCCCTAGGGCTTCGCTATGTCTGTCACTCATAGgtgagtacttatttgggttatgaaatgggatggcagtgaagatctttttt #### Pdcd4_ID11400_7 --> 1 - 0 Original Alignment aGCTGCTCTGGATAAGGCTACTGTGCTCCTGAGTATGTCCAAAGGCGGGAAGCGGAAAGACAGTGTGTGGGGATCTGGAGGCGGGCAACAGCCTGTCAATCACCTTGTTAAAGAG atccaggcacaggcaaccacatggtttcgaatctacttccttccttttagaGCAGCTTTAGATGAAGCTAATGTACTCCTCAGTATGTCTAAAGGTGGGAAACAAAAAGACAGTGTATGGGGATCT---GGTGGGCAACAATCAATCAATCATCTTGTTAAAGAGgtatgcaacctttattctaagggtgtatgtctattctacatgtctattgc Alignment from CESAR aGCTGCTCTGGATAAGGCTACTGTGCTCCTGAGTATGTCCAAAGGCGGGAAGCGGAAAGACAGTGTGTGGGGATCTGGAGGCGGGCAACAGCCTGTCAATCACCTTGTTAAAGAG atccaggcacaggcaaccacatggtttcgaatctacttccttccttttagaGCAGCTTTAGATGAAGCTAATGTACTCCTCAGTATGTCTAAAGGTGGGAAACAAAAAGACAGTGTATGGGGATCT---GGTGGGCAACAATCAATCAATCATCTTGTTAAAGAGgtatgcaacctttattctaagggtgtatgtctattctacatgtctattgc Alignment from Spaln_aa2Genome AGCTGCTCTGGATAAGGCTACTGTGCTCCTGAGTATGTCCAAAGGCGGGAAGCGGAAAGACAGTGTGTGGGGATCTGGAGGCGGGCAACAGCCTGTCAATCACCTTGTTAAAGAG atccaggcacaggcaaccacatggtttcgaatctacttccttccttttagAGCAGCTTTAGATGAAGCTAATGTACTCCTCAGTATGTCTAAAGGTGGGAAACAAAAAGACAGTGTATGGGGATCT---GGTGGGCAACAATCAATCAATCATCTTGTTAAAGAGgtatgcaacctttattctaagggtgtatgtctattctacatgtctattgc Alignment from Spaln_nt2Genome AGCTGCTCTGGATAAGGCTACTGTGCTCCTGAGTATGTCCAAAGGCGGGAAGCGGAAAGACAGTGTGTGGGGATCTGGAGGCGGGCAACAGCCTGTCAATCACCTTGTTAAAGAG atccaggcacaggcaaccacatggtttcgaatctacttccttccttttagAGCAGCTTTAGATGAAGCTAATGTACTCCTCAGTATGTCTAAAGGTGGGAAACAAAAAGACAGTGTATGGGGATCT---GGTGGGCAACAATCAATCAATCATCTTGTTAAAGAGgtatgcaacctttattctaagggtgtatgtctattctacatgtctattgc Alignment from Pairagon AGCTGCTCTGGATAAGGCTACTGTGCTCCTGAGTATGTCCAAAGGCGGGAAGCGGAAAGACAGTGTGTGGGGATCTGGAGGCGGGCAACAGCCTGTCAATCACCTTGTTAAAGAG atccaggcacaggcaaccacatggtttcgaatctacttccttccttttagAGCAGCTTTAGATGAAGCTAATGTACTCCTCAGTATGTCTAAAGGTGGGAAACAAAAAGACAGTGTATGGGGATCT---GGTGGGCAACAATCAATCAATCATCTTGTTAAAGAGgtatgcaacctttattctaagggtgtatgtctattctacatgtctattgc Alignment from Exonerate_protein2genome AGCTGCTCTGGATAAGGCTACTGTGCTCCTGAGTATGTCCAAAGGCGGGAAGCGGAAAGACAGTGTGTGGGGATCTGGAGGCGGGCAACAGCCTGTCAATCACCTTGTTAAAGAG atccaggcacaggcaaccacatggtttcgaatctacttccttccttttagAGCAGCTTTAGATGAAGCTAATGTACTCCTCAGTATGTCTAAAGGTGGGAAACAAAAAGACAGTGTATGGGGATCT---GGTGGGCAACAATCAATCAATCATCTTGTTAAAGAGgtatgcaacctttattctaagggtgtatgtctattctacatgtctattgc Alignment from Exonerate_coding2genome AGCTGCTCTGGATAAGGCTACTGTGCTCCTGAGTATGTCCAAAGGCGGGAAGCGGAAAGACAGTGTGTGGGGATCTGGAGGCGGGCAACAGCCTGTCAATCACCTTGTTAAAGAG atccaggcacaggcaaccacatggtttcgaatctacttccttccttttagAGCAGCTTTAGATGAAGCTAATGTACTCCTCAGTATGTCTAAAGGTGGGAAACAAAAAGACAGTGTATGGGGATCT---GGTGGGCAACAATCAATCAATCATCTTGTTAAAGAGgtatgcaacctttattctaagggtgtatgtctattctacatgtctattgc Alignment from GeneWise AGCTGCTCTGGATAAGGCTACTGTGCTCCTGAGTATGTCCAAAGGCGGGAAGCGGAAAGACAGTGTGTGGGGATCTGGAGGCGGGCAACAGCCTGTCAATCACCTTGTTAAAGAG atccaggcacaggcaaccacatggtttcgaatctacttccttccttttagAGCAGCTTTAGATGAAGCTAATGTACTCCTCAGTATGTCTAAAGGTGGGAAACAAAAAGACAGTGTATGGGGATCTGGTGGG---CAACAATCAATCAATCATCTTGTTAAAGAGgtatgcaacctttattctaagggtgtatgtctattctacatgtctattgc #### Pde6c_ID7535_5 --> 0 - 0 Original Alignment GAATTTTACGATGAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTTATAAAGGACCAAAGACTCCAGATGGCAGG tagtacagagttcggcctggttgcaaattttaaaccctgcactattctagGAATTTTATGACAAGTGGCCAATTAAGGCTGGAGAAGTTGAGCCATATAAAGGACCCAAGACTTCAGATGGCCAGgtaagtgctctgaaaggctagattaaggtgttttacatggtgactaggac Alignment from CESAR GAATTTTACGATGAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTTATAAAGGACCAAAGACTCCAGATGGCAGG tagtacagagttcggcctggttgcaaattttaaaccctgcactattctagGAATTTTATGACAAGTGGCCAATTAAGGCTGGAGAAGTTGAGCCATATAAAGGACCCAAGACTTCAGATGGCCAGgtaagtgctctgaaaggctagattaaggtgttttacatggtgactaggac Alignment from Spaln_aa2Genome GAATTTTACGATGAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTTATAAAGGACCAAAGACTCCAGATGGCAGG tagtacagagttcggcctggttgcaaattttaaaccctgcactattctagGAATTTTATGACAAGTGGCCAATTAAGGCTGGAGAAGTTGAGCCATATAAAGGACCCAAGACTTCAGATGGCCAGgtaagtgctctgaaaggctagattaaggtgttttacatggtgactaggac Alignment from Spaln_nt2Genome GAATTTTACGATGAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTTATAAAGGACCAAAGACTCCAGATGGCAGG tagtacagagttcggcctggttgcaaattttaaaccctgcactattctagGAATTTTATGACAAGTGGCCAATTAAGGCTGGAGAAGTTGAGCCATATAAAGGACCCAAGACTTCAGATGGCCAGgtaagtgctctgaaaggctagattaaggtgttttacatggtgactaggac Alignment from Pairagon GAATTTTACGATGAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTTATAAAGGACCAAAGACTCCAGATGGCAGG tagtacagagttcggcctggttgcaaattttaaaccctgcactattctagGAATTTTATGACAAGTGGCCAATTAAGGCTGGAGAAGTTGAGCCATATAAAGGACCCAAGACTTCAGATGGCCAGgtaagtgctctgaaaggctagattaaggtgttttacatggtgactaggac Alignment from Exonerate_protein2genome GAATTTTACGATGAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTTATAAAGGACCAAAGACTCCAGATGGCAGG tagtacagagttcggcctggttgcaaattttaaaccctgcactattctagGAATTTTATGACAAGTGGCCAATTAAGGCTGGAGAAGTTGAGCCATATAAAGGACCCAAGACTTCAGATGGCCAGgtaagtgctctgaaaggctagattaaggtgttttacatggtgactaggac Alignment from Exonerate_coding2genome GAATTTTACGATGAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTTATAAAGGACCAAAGACTCCAGATGGCAGG tagtacagagttcggcctggttgcaaattttaaaccctgcactattctagGAATTTTATGACAAGTGGCCAATTAAGGCTGGAGAAGTTGAGCCATATAAAGGACCCAAGACTTCAGATGGCCAGgtaagtgctctgaaaggctagattaaggtgttttacatggtgactaggac Alignment from GeneWise GAATTTTACGATGAGTGGCCAATCAAGCTTGGAGAAGTTGAGCCTTATAAAGGACCAAAGACTCCAGATGGCAGG tagtacagagttcggcctggttgcaaattttaaaccctgcactattctagGAATTTTATGACAAGTGGCCAATTAAGGCTGGAGAAGTTGAGCCATATAAAGGACCCAAGACTTCAGATGGCCAGgtaagtgctctgaaaggctagattaaggtgttttacatggtgactaggac #### Pde6c_ID7536_6 --> 0 - 2 Original Alignment GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTcc ttcagtcaggttacccttggctatctagcttatttttttcttaaacctagGAAATCATATTCTACAAAATTACTGACTACATTTTGCATGGGAAGGAGGAACTCAATGTGATTccgtaagtagtcaactgaaggcagtctaccctcccatgccatgataacacca Alignment from CESAR GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTcc ttcagtcaggttacccttggctatctagcttatttttttcttaaacctagGAAATCATATTCTACAAAATTACTGACTACATTTTGCATGGGAAGGAGGAACTCAATGTGATTccgtaagtagtcaactgaaggcagtctaccctcccatgccatgataacacca Alignment from Spaln_aa2Genome GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ttcagtcaggttacccttggctatctagcttatttttttcttaaacctagGAAATCATATTCTACAAAATTACTGACTACATTTTGCATGGGAAGGAGGAACTCAATGTGATTCCgtaagtagtcaactgaaggcagtctaccctcccatgccatgataacacca Alignment from Spaln_nt2Genome GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ttcagtcaggttacccttggctatctagcttatttttttcttaaacctagGAAATCATATTCTACAAAATTACTGACTACATTTTGCATGGGAAGGAGGAACTCAATGTGATTCCgtaagtagtcaactgaaggcagtctaccctcccatgccatgataacacca Alignment from Pairagon GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ttcagtcaggttacccttggctatctagcttatttttttcttaaacctagGAAATCATATTCTACAAAATTACTGACTACATTTTGCATGGGAAGGAGGAACTCAATGTGATTCCgtaagtagtcaactgaaggcagtctaccctcccatgccatgataacacca Alignment from Exonerate_protein2genome GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ttcagtcaggttacccttggctatctagcttatttttttcttaaacctagGAAATCATATTCTACAAAATTACTGACTACATTTTGCATGGGAAGGAGGAACTCAATGTGATTCCgtaagtagtcaactgaaggcagtctaccctcccatgccatgataacacca Alignment from Exonerate_coding2genome GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ttcagtcaggttacccttggctatctagcttatttttttcttaaacctagGAAATCATATTCTACAAAATTACTGACTACATTTTGCATGGGAAGGAGGAACTCAATGTGATTCCgtaagtagtcaactgaaggcagtctaccctcccatgccatgataacacca Alignment from GeneWise GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ttcagtcaggttacccttggctatctagcttatttttttcttaaacctagGAAATCATATTCTACAAAATTACTGACTACATTTTGCATGGGAAGGAGGAACTCAATGTGATTCCgtaagtagtcaactgaaggcagtctaccctcccatgccatgataacacca #### Pde6c_ID7538_8 --> 0 - 0 Original Alignment ATCTGTAACATGCTGAATGCCCCTGCAGATGAGTACTTCACATTTCAG aacatgtttcagcacaacatgtctaaacttcattatttttcttttggcagATTTGTAATATGCTCAATGCTCCTGCAGATCAATACTTCACATTTCAGgtaattctcccgagttgactaggccctgtgtgacccacaacaggggcatc Alignment from CESAR ATCTGTAACATGCTGAATGCCCCTGCAGATGAGTACTTCACATTTCAG aacatgtttcagcacaacatgtctaaacttcattatttttcttttggcagATTTGTAATATGCTCAATGCTCCTGCAGATCAATACTTCACATTTCAGgtaattctcccgagttgactaggccctgtgtgacccacaacaggggcatc Alignment from Spaln_aa2Genome ATCTGTAACATGCTGAATGCCCCTGCAGATGAGTACTTCACATTTCAG aacatgtttcagcacaacatgtctaaacttcattatttttcttttggcagATTTGTAATATGCTCAATGCTCCTGCAGATCAATACTTCACATTTCAGgtaattctcccgagttgactaggccctgtgtgacccacaacaggggcatc Alignment from Spaln_nt2Genome ATCTGTAACATGCTGAATGCCCCTGCAGATGAGTACTTCACATTTCAG aacatgtttcagcacaacatgtctaaacttcattatttttcttttggcagATTTGTAATATGCTCAATGCTCCTGCAGATCAATACTTCACATTTCAGgtaattctcccgagttgactaggccctgtgtgacccacaacaggggcatc Alignment from Pairagon ATCTGTAACATGCTGAATGCCCCTGCAGATGAGTACTTCACATTTCAG aacatgtttcagcacaacatgtctaaacttcattatttttcttttggcagATTTGTAATATGCTCAATGCTCCTGCAGATCAATACTTCACATTTCAGgtaattctcccgagttgactaggccctgtgtgacccacaacaggggcatc Alignment from Exonerate_protein2genome ATCTGTAACATGCTGAATGCCCCTGCAGATGAGTACTTCACATTTCAG aacatgtttcagcacaacatgtctaaacttcattatttttcttttggcagATTTGTAATATGCTCAATGCTCCTGCAGATCAATACTTCACATTTCAGgtaattctcccgagttgactaggccctgtgtgacccacaacaggggcatc Alignment from Exonerate_coding2genome ATCTGTAACATGCTGAATGCCCCTGCAGATGAGTACTTCACATTTCAG aacatgtttcagcacaacatgtctaaacttcattatttttcttttggcagATTTGTAATATGCTCAATGCTCCTGCAGATCAATACTTCACATTTCAGgtaattctcccgagttgactaggccctgtgtgacccacaacaggggcatc Alignment from GeneWise ATCTGTAACATGCTGAATGCCCCTGCAGATGAGTACTTCACATTTCAG aacatgtttcagcacaacatgtctaaacttcattatttttcttttggcagATTTGTAATATGCTCAATGCTCCTGCAGATCAATACTTCACATTTCAGgtaattctcccgagttgactaggccctgtgtgacccacaacaggggcatc #### Pde6c_ID7543_13 --> 0 - 0 Original Alignment GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG ctctttaatgttggagtagtgaccatgacggttatgttttctccctctagATTCTTACAAAGTGGATGTACACCGTCCGAAAGGGATACCGACCTGCTACATACCACAATTGGCGGCATGGGTCAAATGTGGGGTATACAATATCTCCCCTGTTAATGgtgagtttagctgtggatagcttgaatgctctcttcctactaaatgccag Alignment from CESAR GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG ctctttaatgttggagtagtgaccatgacggttatgttttctccctctagATTCTTACAAAGTGGATGTACACCGTCCGAAAGGGATACCGACCTGCTACATACCACAATTGGCGGCATGGGTCAAATGTGGGGTATACAATATCTCCCCTGTTAATGgtgagtttagctgtggatagcttgaatgctctcttcctactaaatgccag Alignment from Spaln_aa2Genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG ctctttaatgttggagtagtgaccatgacggttatgttttctccctctagATTCTTACAAAGTGGATGTACACCGTCCGAAAGGGATACCGACCTGCTACATACCACAATTGGCGGCATGGGTCAAATGTGGGGTATACAATATCTCCCCTGTTAATGgtgagtttagctgtggatagcttgaatgctctcttcctactaaatgccag Alignment from Spaln_nt2Genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG ctctttaatgttggagtagtgaccatgacggttatgttttctccctctagATTCTTACAAAGTGGATGTACACCGTCCGAAAGGGATACCGACCTGCTACATACCACAATTGGCGGCATGGGTCAAATGTGGGGTATACAATATCTCCCCTGTTAATGgtgagtttagctgtggatagcttgaatgctctcttcctactaaatgccag Alignment from Pairagon GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG ctctttaatgttggagtagtgaccatgacggttatgttttctccctctagATTCTTACAAAGTGGATGTACACCGTCCGAAAGGGATACCGACCTGCTACATACCACAATTGGCGGCATGGGTCAAATGTGGGGTATACAATATCTCCCCTGTTAATGgtgagtttagctgtggatagcttgaatgctctcttcctactaaatgccag Alignment from Exonerate_protein2genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG ctctttaatgttggagtagtgaccatgacggttatgttttctccctctagATTCTTACAAAGTGGATGTACACCGTCCGAAAGGGATACCGACCTGCTACATACCACAATTGGCGGCATGGGTCAAATGTGGGGTATACAATATCTCCCCTGTTAATGgtgagtttagctgtggatagcttgaatgctctcttcctactaaatgccag Alignment from Exonerate_coding2genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG ctctttaatgttggagtagtgaccatgacggttatgttttctccctctagATTCTTACAAAGTGGATGTACACCGTCCGAAAGGGATACCGACCTGCTACATACCACAATTGGCGGCATGGGTCAAATGTGGGGTATACAATATCTCCCCTGTTAATGgtgagtttagctgtggatagcttgaatgctctcttcctactaaatgccag Alignment from GeneWise GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG ctctttaatgttggagtagtgaccatgacggttatgttttctccctctagATTCTTACAAAGTGGATGTACACCGTCCGAAAGGGATACCGACCTGCTACATACCACAATTGGCGGCATGGGTCAAATGTGGGGTATACAATATCTCCCCTGTTAATGgtgagtttagctgtggatagcttgaatgctctcttcctactaaatgccag #### Pde6c_ID7544_14 --> 0 - 2 Original Alignment ACAGGAAGACTAAAGAAATACTATACAGACCTTGAAGCCTTTGCCATGCTCGCTGCTGCTTTCTGCCATGACATTGACCACAGAGGCACCAATAACTTGTACCAAATGaa ctgactgttgtgaataaatgcaagtgatgaattgtttttatttcttgaagACAGGGAGATTAAAAAAATACTATACAGACCTTGAAGCTTTC---------ACTTCTGCCTTCTGCCATGATATGGATCATAGAGCAACCAACAACTTGTACCAAATGcagtgagtaatgactagtacactatatagagtttgctgccaacttcagacac Alignment from CESAR ACAGGAAGACTAAAGAAATACTATACAGACCTTGAAGCCTTTGCCATGCTCGCTGCTGCTTTCTGCCATGACATTGACCACAGAGGCACCAATAACTTGTACCAAATGaa ctgactgttgtgaataaatgcaagtgatgaattgtttttatttcttgaagACAGGGAGATTAAAAAAATACTATACAGACCTTGAAGCTTTC---------ACTTCTGCCTTCTGCCATGATATGGATCATAGAGCAACCAACAACTTGTACCAAATGcagtgagtaatgactagtacactatatagagtttgctgccaacttcagacac Alignment from Spaln_aa2Genome ACAGGAAGACTAAAGAAATACTATACAGACCTTGAAGCCTTTGCCATGCTCGCTGCTGCTTTCTGCCATGACATTGACCACAGAGGCACCAATAACTTGTACCAAATGAA ctgactgttgtgaataaatgcaagtgatgaattgtttttatttcttgaagACAGGGAGATTAAAAAAATACTATACAGACCTTGAAGCTTTC---------ACTTCTGCCTTCTGCCATGATATGGATCATAGAGCAACCAACAACTTGTACCAAATGCAgtgagtaatgactagtacactatatagagtttgctgccaacttcagacac Alignment from Spaln_nt2Genome ACAGGAAGACTAAAGAAATACTATACAGACCTTGAAGCCTTTGCCATGCTCGCTGCTGCTTTCTGCCATGACATTGACCACAGAGGCACCAATAACTTGTACCAAATGAA ctgactgttgtgaataaatgcaagtgatgaattgtttttatttcttgaagACAGGGAGATTAAAAAAATACTATACAGACCTTGAAGCTT---------TCACTTCTGCCTTCTGCCATGATATGGATCATAGAGCAACCAACAACTTGTACCAAATGCAgtgagtaatgactagtacactatatagagtttgctgccaacttcagacac Alignment from Pairagon ACAGGAAGACTAAAGAAATACTATACAGACCTTGAAGCCTTTGCCATGCTCGCTGCTGCTTTCTGCCATGACATTGACCACAGAGGCACCAATAACTTGTACCAAATGAA ctgactgttgtgaataaatgcaagtgatgaattgtttttatttcttgaagACAGGGAGATTAAAAAAATACTATACAGACCTTGAAGCTT---------TCACTTCTGCCTTCTGCCATGATATGGATCATAGAGCAACCAACAACTTGTACCAAATGCAgtgagtaatgactagtacactatatagagtttgctgccaacttcagacac Alignment from Exonerate_protein2genome ACAGGAAGACTAAAGAAATACTATACAGACCTTGAAGCCTTTGCCATGCTCGCTGCTGCTTTCTGCCATGACATTGACCACAGAGGCACCAATAACTTGTACCAAATGAA ctgactgttgtgaataaatgcaagtgatgaattgtttttatttcttgaagACAGGGAGATTAAAAAAATACTATACAGACCTTGAAGCTTTC---------ACTTCTGCCTTCTGCCATGATATGGATCATAGAGCAACCAACAACTTGTACCAAATGCAgtgagtaatgactagtacactatatagagtttgctgccaacttcagacac Alignment from Exonerate_coding2genome ACAGGAAGACTAAAGAAATACTATACAGACCTTGAAGCCTTTGCCATGCTCGCTGCTGCTTTCTGCCATGACATTGACCACAGAGGCACCAATAACTTGTACCAAATGAA ctgactgttgtgaataaatgcaagtgatgaattgtttttatttcttgaagACAGGGAGATTAAAAAAATACTATACAGACCTTGAAGCTTTC---------ACTTCTGCCTTCTGCCATGATATGGATCATAGAGCAACCAACAACTTGTACCAAATGCAgtgagtaatgactagtacactatatagagtttgctgccaacttcagacac Alignment from GeneWise ACAGGAAGACTAAAGAAATACTATACAGACCTTGAAGCCTTTGCCATGCTCGCTGCTGCTTTCTGCCATGACATTGACCACAGAGGCACCAATAACTTGTACCAAATGAA ctgactgttgtgaataaatgcaagtgatgaattgtttttatttcttgaagACAGGGAGATTAAAAAAATACTATACAGACCTTGAAGCTTTCACT---------TCTGCCTTCTGCCATGATATGGATCATAGAGCAACCAACAACTTGTACCAAATGCAgtgagtaatgactagtacactatatagagtttgctgccaacttcagacac #### Pde6c_ID7548_18 --> 1 - 0 Original Alignment gGCCATGATGATGACTGCCTGTGACCTGTCTGCCATCACCAAGCCCTGGGAGGTGCAGAGTCAG cctggttttaatattcattagtagtaatgtccttaatcctctacctaaaggACCATAATGATGACTGCCTGTGACCTCTTTGCTATT------CCATGGGAGGTACAAAGTCAAgtaggtctcacaatctattttcccaagctagtcataacacccatctaaac Alignment from CESAR gGCCATGATGATGACTGCCTGTGACCTGTCTGCCATCACCAAGCCCTGGGAGGTGCAGAGTCAG cctggttttaatattcattagtagtaatgtccttaatcctctacctaaaggACCATAATGATGACTGCCTGTGACCTCTTTGCTATT------CCATGGGAGGTACAAAGTCAAgtaggtctcacaatctattttcccaagctagtcataacacccatctaaac Alignment from Spaln_aa2Genome GGCCATGATGATGACTGCCTGTGACCTGTCTGCCATCACCAAGCCCTGGGAGGTGCAGAGTCAG cctggttttaatattcattagtagtaatgtccttaatcctctacctaaagGACCATAATGATGACTGCCTGTGACCTCTTTGCTATT------CCATGGGAGGTACAAAGTCAAgtaggtctcacaatctattttcccaagctagtcataacacccatctaaac Alignment from Spaln_nt2Genome GGCCATGATGATGACTGCCTGTGACCTGTCTGCCATCACCAAGCCCTGGGAGGTGCAGAGTCAG cctggttttaatattcattagtagtaatgtccttaatcctctacctaaagGACCATAATGATGACTGCCTGTGACCTCTTTGCTAT------TCCATGGGAGGTACAAAGTCAAgtaggtctcacaatctattttcccaagctagtcataacacccatctaaac Alignment from Pairagon GGCCATGATGATGACTGCCTGTGACCTGTCTGCCATCACCAAGCCCTGGGAGGTGCAGAGTCAG cctggttttaatattcattagtagtaatgtccttaatcctctacctaaagGACCATAATGATGACTGCCTGTGACCTCTTTGCTATT------CCATGGGAGGTACAAAGTCAAgtaggtctcacaatctattttcccaagctagtcataacacccatctaaac Alignment from Exonerate_protein2genome GGCCATGATGATGACTGCCTGTGACCTGTCTGCCATCACCAAGCCCTGGGAGGTGCAGAGTCAG cctggttttaatattcattagtagtaatgtccttaatcctctacctaaagGACCATAATGATGACTGCCTGTGACCTCTTTGCTATT------CCATGGGAGGTACAAAGTCAAgtaggtctcacaatctattttcccaagctagtcataacacccatctaaac Alignment from Exonerate_coding2genome GGCCATGATGATGACTGCCTGTGACCTGTCTGCCATCACCAAGCCCTGGGAGGTGCAGAGTCAG cctggttttaatattcattagtagtaatgtccttaatcctctacctaaagGACCATAATGATGACTGCCTGTGACCTCTTTGCTATT------CCATGGGAGGTACAAAGTCAAgtaggtctcacaatctattttcccaagctagtcataacacccatctaaac Alignment from GeneWise GGCCATGATGATGACTGCCTGTGACCTGTCTGCCATCACCAAGCCCTGGGAGGTGCAGAGTCAG cctggttttaatattcattagtagtaatgtccttaatcctctacctaaagGACCATAATGATGACTGCCTGTGACCTCTTTGCTATT------CCATGGGAGGTACAAAGTCAAgtaggtctcacaatctattttcccaagctagtcataacacccatctaaac #### Pdlim1_ID7888_2 --> 0 - 2 Original Alignment GTCACTCCCGGAAGCAAGGCTGCTATAGCGAATTTATGTATTGGAGATTTAATCACAGCCATCGATGGGGAAGATACCAGCAGCATGACACACTTGGAAGCTCAGAACAAAATCAAGGGCTGCGCAGACAACATGACGCTCACAGTATCCag tcaagttcactcagcacattgctgatctcttctctcctcgctgtgcctagGTCACTCCCGGAAGCAAGGCTGCAATATCAAATTTATGTATTGGAGATTTAATCACAGCTATTGATGGAGAAGATAGTAGCAGCATGACGCACTTAGAAGCTCAGAACAAAATCAAGGGCTGTGCAGACAACATGACTCTAACCGTATCCaagttaggctgattgcgaatttgactgctctctatacctcttatgctttcat Alignment from CESAR GTCACTCCCGGAAGCAAGGCTGCTATAGCGAATTTATGTATTGGAGATTTAATCACAGCCATCGATGGGGAAGATACCAGCAGCATGACACACTTGGAAGCTCAGAACAAAATCAAGGGCTGCGCAGACAACATGACGCTCACAGTATCCag tcaagttcactcagcacattgctgatctcttctctcctcgctgtgcctagGTCACTCCCGGAAGCAAGGCTGCAATATCAAATTTATGTATTGGAGATTTAATCACAGCTATTGATGGAGAAGATAGTAGCAGCATGACGCACTTAGAAGCTCAGAACAAAATCAAGGGCTGTGCAGACAACATGACTCTAACCGTATCCaagttaggctgattgcgaatttgactgctctctatacctcttatgctttcat Alignment from Spaln_aa2Genome GTCACTCCCGGAAGCAAGGCTGCTATAGCGAATTTATGTATTGGAGATTTAATCACAGCCATCGATGGGGAAGATACCAGCAGCATGACACACTTGGAAGCTCAGAACAAAATCAAGGGCTGCGCAGACAACATGACGCTCACAGTATCCAG tcaagttcactcagcacattgctgatctcttctctcctcgctgtgcctagGTCACTCCCGGAAGCAAGGCTGCAATATCAAATTTATGTATTGGAGATTTAATCACAGCTATTGATGGAGAAGATAGTAGCAGCATGACGCACTTAGAAGCTCAGAACAAAATCAAGGGCTGTGCAGACAACATGACTCTAACCGTATCCAAgttaggctgattgcgaatttgactgctctctatacctcttatgctttcat Alignment from Spaln_nt2Genome GTCACTCCCGGAAGCAAGGCTGCTATAGCGAATTTATGTATTGGAGATTTAATCACAGCCATCGATGGGGAAGATACCAGCAGCATGACACACTTGGAAGCTCAGAACAAAATCAAGGGCTGCGCAGACAACATGACGCTCACAGTATCCAG tcaagttcactcagcacattgctgatctcttctctcctcgctgtgcctagGTCACTCCCGGAAGCAAGGCTGCAATATCAAATTTATGTATTGGAGATTTAATCACAGCTATTGATGGAGAAGATAGTAGCAGCATGACGCACTTAGAAGCTCAGAACAAAATCAAGGGCTGTGCAGACAACATGACTCTAACCGTATCCAAgttaggctgattgcgaatttgactgctctctatacctcttatgctttcat Alignment from Pairagon GTCACTCCCGGAAGCAAGGCTGCTATAGCGAATTTATGTATTGGAGATTTAATCACAGCCATCGATGGGGAAGATACCAGCAGCATGACACACTTGGAAGCTCAGAACAAAATCAAGGGCTGCGCAGACAACATGACGCTCACAGTATCCAG tcaagttcactcagcacattgctgatctcttctctcctcgctgtgcctagGTCACTCCCGGAAGCAAGGCTGCAATATCAAATTTATGTATTGGAGATTTAATCACAGCTATTGATGGAGAAGATAGTAGCAGCATGACGCACTTAGAAGCTCAGAACAAAATCAAGGGCTGTGCAGACAACATGACTCTAACCGTATCCAAgttaggctgattgcgaatttgactgctctctatacctcttatgctttcat Alignment from Exonerate_protein2genome GTCACTCCCGGAAGCAAGGCTGCTATAGCGAATTTATGTATTGGAGATTTAATCACAGCCATCGATGGGGAAGATACCAGCAGCATGACACACTTGGAAGCTCAGAACAAAATCAAGGGCTGCGCAGACAACATGACGCTCACAGTATCCAG tcaagttcactcagcacattgctgatctcttctctcctcgctgtgcctagGTCACTCCCGGAAGCAAGGCTGCAATATCAAATTTATGTATTGGAGATTTAATCACAGCTATTGATGGAGAAGATAGTAGCAGCATGACGCACTTAGAAGCTCAGAACAAAATCAAGGGCTGTGCAGACAACATGACTCTAACCGTATCCAAgttaggctgattgcgaatttgactgctctctatacctcttatgctttcat Alignment from Exonerate_coding2genome GTCACTCCCGGAAGCAAGGCTGCTATAGCGAATTTATGTATTGGAGATTTAATCACAGCCATCGATGGGGAAGATACCAGCAGCATGACACACTTGGAAGCTCAGAACAAAATCAAGGGCTGCGCAGACAACATGACGCTCACAGTATCCAG tcaagttcactcagcacattgctgatctcttctctcctcgctgtgcctagGTCACTCCCGGAAGCAAGGCTGCAATATCAAATTTATGTATTGGAGATTTAATCACAGCTATTGATGGAGAAGATAGTAGCAGCATGACGCACTTAGAAGCTCAGAACAAAATCAAGGGCTGTGCAGACAACATGACTCTAACCGTATCCAAgttaggctgattgcgaatttgactgctctctatacctcttatgctttcat Alignment from GeneWise GTCACTCCCGGAAGCAAGGCTGCTATAGCGAATTTATGTATTGGAGATTTAATCACAGCCATCGATGGGGAAGATACCAGCAGCATGACACACTTGGAAGCTCAGAACAAAATCAAGGGCTGCGCAGACAACATGACGCTCACAGTATCCAG tcaagttcactcagcacattgctgatctcttctctcctcgctgtgcctagGTCACTCCCGGAAGCAAGGCTGCAATATCAAATTTATGTATTGGAGATTTAATCACAGCTATTGATGGAGAAGATAGTAGCAGCATGACGCACTTAGAAGCTCAGAACAAAATCAAGGGCTGTGCAGACAACATGACTCTAACCGTATCCAAgttaggctgattgcgaatttgactgctctctatacctcttatgctttcat #### Peli3_ID757_5 --> 0 - 0 Original Alignment GAG------CGGGCAGCCAAATGGAGGACTCCGGATGGTCTGATGGACGGCTTGACAACCAATGGGGTTCTGGTGATGCACCCAGCAGGTGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCTGCGGGAATGTGTACACGCTGCGGGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTG tgatacagtctggaaagccccttaactcagaccagtgtctttcattacagGAGCAAGCACAATCAGCCAAATGGAGAACTCCAGATGGTCTAATGGCTGGCCTGACAACTAATGGGGGGTTGGTAATGCGTCCTGCAGGAGGGTTCTCCAAGGATTCTGCCCCAGGTGTCTGGAAGGAGATCTCCATCCGTGGAAATGTATATACTCTACGTGATAGCCGTGCTGCACAGCAGCGGGGTAGGTTGgtaagtggagtgtagtgtttcaattttgactgcacatgactaatagcaaa Alignment from CESAR GAGCGGGCA------GCCAAATGGAGGACTCCGGATGGTCTGATGGACGGCTTGACAACCAATGGGGTTCTGGTGATGCACCCAGCAGGTGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCTGCGGGAATGTGTACACGCTGCGGGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTG tgatacagtctggaaagccccttaactcagaccagtgtctttcattacagGAGCAAGCACAATCAGCCAAATGGAGAACTCCAGATGGTCTAATGGCTGGCCTGACAACTAATGGGGGGTTGGTAATGCGTCCTGCAGGAGGGTTCTCCAAGGATTCTGCCCCAGGTGTCTGGAAGGAGATCTCCATCCGTGGAAATGTATATACTCTACGTGATAGCCGTGCTGCACAGCAGCGGGGTAGGTTGgtaagtggagtgtagtgtttcaattttgactgcacatgactaatagcaaa Alignment from Spaln_aa2Genome GAGCGGGCA------GCCAAATGGAGGACTCCGGATGGTCTGATGGACGGCTTGACAACCAATGGGGTTCTGGTGATGCACCCAGCAGGTGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCTGCGGGAATGTGTACACGCTGCGGGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTG tgatacagtctggaaagccccttaactcagaccagtgtctttcattacagGAGCAAGCACAATCAGCCAAATGGAGAACTCCAGATGGTCTAATGGCTGGCCTGACAACTAATGGGGGGTTGGTAATGCGTCCTGCAGGAGGGTTCTCCAAGGATTCTGCCCCAGGTGTCTGGAAGGAGATCTCCATCCGTGGAAATGTATATACTCTACGTGATAGCCGTGCTGCACAGCAGCGGGGTAGGTTGgtaagtggagtgtagtgtttcaattttgactgcacatgactaatagcaaa Alignment from Spaln_nt2Genome GAGCGGGCA------GCCAAATGGAGGACTCCGGATGGTCTGATGGACGGCTTGACAACCAATGGGGTTCTGGTGATGCACCCAGCAGGTGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCTGCGGGAATGTGTACACGCTGCGGGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTG tgatacagtctggaaagccccttaactcagaccagtgtctttcattacagGAGCAAGCACAATCAGCCAAATGGAGAACTCCAGATGGTCTAATGGCTGGCCTGACAACTAATGGGGGGTTGGTAATGCGTCCTGCAGGAGGGTTCTCCAAGGATTCTGCCCCAGGTGTCTGGAAGGAGATCTCCATCCGTGGAAATGTATATACTCTACGTGATAGCCGTGCTGCACAGCAGCGGGGTAGGTTGgtaagtggagtgtagtgtttcaattttgactgcacatgactaatagcaaa Alignment from Pairagon GAGCGGG------CAGCCAAATGGAGGACTCCGGATGGTCTGATGGACGGCTTGACAACCAATGGGGTTCTGGTGATGCACCCAGCAGGTGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCTGCGGGAATGTGTACACGCTGCGGGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTG tgatacagtctggaaagccccttaactcagaccagtgtctttcattacagGAGCAAGCACAATCAGCCAAATGGAGAACTCCAGATGGTCTAATGGCTGGCCTGACAACTAATGGGGGGTTGGTAATGCGTCCTGCAGGAGGGTTCTCCAAGGATTCTGCCCCAGGTGTCTGGAAGGAGATCTCCATCCGTGGAAATGTATATACTCTACGTGATAGCCGTGCTGCACAGCAGCGGGGTAGGTTGgtaagtggagtgtagtgtttcaattttgactgcacatgactaatagcaaa Alignment from Exonerate_protein2genome GAGCGGGCA------GCCAAATGGAGGACTCCGGATGGTCTGATGGACGGCTTGACAACCAATGGGGTTCTGGTGATGCACCCAGCAGGTGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCTGCGGGAATGTGTACACGCTGCGGGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTG tgatacagtctggaaagccccttaactcagaccagtgtctttcattacagGAGCAAGCACAATCAGCCAAATGGAGAACTCCAGATGGTCTAATGGCTGGCCTGACAACTAATGGGGGGTTGGTAATGCGTCCTGCAGGAGGGTTCTCCAAGGATTCTGCCCCAGGTGTCTGGAAGGAGATCTCCATCCGTGGAAATGTATATACTCTACGTGATAGCCGTGCTGCACAGCAGCGGGGTAGGTTGgtaagtggagtgtagtgtttcaattttgactgcacatgactaatagcaaa Alignment from Exonerate_coding2genome GAGCGGGCA------GCCAAATGGAGGACTCCGGATGGTCTGATGGACGGCTTGACAACCAATGGGGTTCTGGTGATGCACCCAGCAGGTGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCTGCGGGAATGTGTACACGCTGCGGGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTG tgatacagtctggaaagccccttaactcagaccagtgtctttcattacagGAGCAAGCACAATCAGCCAAATGGAGAACTCCAGATGGTCTAATGGCTGGCCTGACAACTAATGGGGGGTTGGTAATGCGTCCTGCAGGAGGGTTCTCCAAGGATTCTGCCCCAGGTGTCTGGAAGGAGATCTCCATCCGTGGAAATGTATATACTCTACGTGATAGCCGTGCTGCACAGCAGCGGGGTAGGTTGgtaagtggagtgtagtgtttcaattttgactgcacatgactaatagcaaa Alignment from GeneWise GAGCGGGCA------GCCAAATGGAGGACTCCGGATGGTCTGATGGACGGCTTGACAACCAATGGGGTTCTGGTGATGCACCCAGCAGGTGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCTGCGGGAATGTGTACACGCTGCGGGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTGGTGG tgatacagtctggaaagccccttaactcagaccagtgtctttcattacagGAGCAAGCACAATCAGCCAAATGGAGAACTCCAGATGGTCTAATGGCTGGCCTGACAACTAATGGGGGGTTGGTAATGCGTCCTGCAGGAGGGTTCTCCAAGGATTCTGCCCCAGGTGTCTGGAAGGAGATCTCCATCCGTGGAAATGTATATACTCTACGTGATAGCCGTGCTGCACAGCAGCGGGGTAGGTTGGTAAgtggagtgtagtgtttcaattttgactgcacatgactaatagcaaa #### Peli3_ID760_2 --> 1 - 0 Original Alignment cTACAATGGGTGTCTGGCAAGTGGAGACAAGGGCCGCCGCCGAAGCCGCCTGGCACTGAGCCGCCGGCCACATGCCAACGGAGTGAAGCCAGATGTCATGCACCACATCTCCACACCACTCGTCTCCAAG tctctgagtggttcagttctccgacatctgtaattttatattgttttcagtTACAATGGGTGTCTGGCAAGTGGAGACAAGGGGCGCCGCCAAAGCCGCCTTGCCCTGAGCTGCCGACCCCATGCCAATGGAGTGAAGCCTGATGTCATGCATCACATCTCCACACCACTTGTGTCTAAGgtatgtcttgcccacacaccaatccaatgtcatcctctccatttattgtc Alignment from CESAR cTACAATGGGTGTCTGGCAAGTGGAGACAAGGGCCGCCGCCGAAGCCGCCTGGCACTGAGCCGCCGGCCACATGCCAACGGAGTGAAGCCAGATGTCATGCACCACATCTCCACACCACTCGTCTCCAAG tctctgagtggttcagttctccgacatctgtaattttatattgttttcagtTACAATGGGTGTCTGGCAAGTGGAGACAAGGGGCGCCGCCAAAGCCGCCTTGCCCTGAGCTGCCGACCCCATGCCAATGGAGTGAAGCCTGATGTCATGCATCACATCTCCACACCACTTGTGTCTAAGgtatgtcttgcccacacaccaatccaatgtcatcctctccatttattgtc Alignment from Spaln_aa2Genome CTACAATGGGTGTCTGGCAAGTGGAGACAAGGGCCGCCGCCGAAGCCGCCTGGCACTGAGCCGCCGGCCACATGCCAACGGAGTGAAGCCAGATGTCATGCACCACATCTCCACACCACTCGTCTCCAAG tctctgagtggttcagttctccgacatctgtaattttatattgttttcagTTACAATGGGTGTCTGGCAAGTGGAGACAAGGGGCGCCGCCAAAGCCGCCTTGCCCTGAGCTGCCGACCCCATGCCAATGGAGTGAAGCCTGATGTCATGCATCACATCTCCACACCACTTGTGTCTAAGgtatgtcttgcccacacaccaatccaatgtcatcctctccatttattgtc Alignment from Spaln_nt2Genome CTACAATGGGTGTCTGGCAAGTGGAGACAAGGGCCGCCGCCGAAGCCGCCTGGCACTGAGCCGCCGGCCACATGCCAACGGAGTGAAGCCAGATGTCATGCACCACATCTCCACACCACTCGTCTCCAAG tctctgagtggttcagttctccgacatctgtaattttatattgttttcagTTACAATGGGTGTCTGGCAAGTGGAGACAAGGGGCGCCGCCAAAGCCGCCTTGCCCTGAGCTGCCGACCCCATGCCAATGGAGTGAAGCCTGATGTCATGCATCACATCTCCACACCACTTGTGTCTAAGgtatgtcttgcccacacaccaatccaatgtcatcctctccatttattgtc Alignment from Pairagon CTACAATGGGTGTCTGGCAAGTGGAGACAAGGGCCGCCGCCGAAGCCGCCTGGCACTGAGCCGCCGGCCACATGCCAACGGAGTGAAGCCAGATGTCATGCACCACATCTCCACACCACTCGTCTCCAAG tctctgagtggttcagttctccgacatctgtaattttatattgttttcagTTACAATGGGTGTCTGGCAAGTGGAGACAAGGGGCGCCGCCAAAGCCGCCTTGCCCTGAGCTGCCGACCCCATGCCAATGGAGTGAAGCCTGATGTCATGCATCACATCTCCACACCACTTGTGTCTAAGgtatgtcttgcccacacaccaatccaatgtcatcctctccatttattgtc Alignment from Exonerate_protein2genome CTACAATGGGTGTCTGGCAAGTGGAGACAAGGGCCGCCGCCGAAGCCGCCTGGCACTGAGCCGCCGGCCACATGCCAACGGAGTGAAGCCAGATGTCATGCACCACATCTCCACACCACTCGTCTCCAAG tctctgagtggttcagttctccgacatctgtaattttatattgttttcagTTACAATGGGTGTCTGGCAAGTGGAGACAAGGGGCGCCGCCAAAGCCGCCTTGCCCTGAGCTGCCGACCCCATGCCAATGGAGTGAAGCCTGATGTCATGCATCACATCTCCACACCACTTGTGTCTAAGgtatgtcttgcccacacaccaatccaatgtcatcctctccatttattgtc Alignment from Exonerate_coding2genome CTACAATGGGTGTCTGGCAAGTGGAGACAAGGGCCGCCGCCGAAGCCGCCTGGCACTGAGCCGCCGGCCACATGCCAACGGAGTGAAGCCAGATGTCATGCACCACATCTCCACACCACTCGTCTCCAAG tctctgagtggttcagttctccgacatctgtaattttatattgttttcagTTACAATGGGTGTCTGGCAAGTGGAGACAAGGGGCGCCGCCAAAGCCGCCTTGCCCTGAGCTGCCGACCCCATGCCAATGGAGTGAAGCCTGATGTCATGCATCACATCTCCACACCACTTGTGTCTAAGgtatgtcttgcccacacaccaatccaatgtcatcctctccatttattgtc Alignment from GeneWise -TACAATGGGTGTCTGGCAAGTGGAGACAAGGGCCGCCGCCGAAGCCGCCTGGCACTGAGCCGCCGGCCACATGCCAACGGAGTGAAGCCAGATGTCATGCACCACATCTCCACACCACTCGTCTCCAAG tctctgagtggttcagttctccgacatctgtaattttatattgttttcagTTACAATGGGTGTCTGGCAAGTGGAGACAAGGGGCGCCGCCAAAGCCGCCTTGCCCTGAGCTGCCGACCCCATGCCAATGGAGTGAAGCCTGATGTCATGCATCACATCTCCACACCACTTGTGTCTAAGgtatgtcttgcccacacaccaatccaatgtcatcctctccatttattgtc #### Peo1_ID9267_4 --> 1 - 0 Original Alignment gATTGCAGCTCAAGACTACATTGTTGGAGCCTTTCGGAAGTTTGCTACAGACAACAGTTGCCACGTGACTCTGGTCATTCACCCTCGGAAAGAAGACGACGACAAGGAACTGCAGACAGCATCCATTTTCGGCTCAGCCAAA agtgtatgtggggaccttgtctagtctattaaacttttgctttgtttcagaATTGCAGCCCAAGAATACATTGTTGGAGCCTGTTGGAAGTTTGCAATGGACAATAGTTGCCATGTGACACTGGTCATCCACTCTCAGAAAGAAGATGATGACAAAGAACTGCAGACTGCATCAAACTTTGCATCCACCAAAgtaagtcagcattatgtgataacagtagatcatatactgagcaagatggg Alignment from CESAR gATTGCAGCTCAAGACTACATTGTTGGAGCCTTTCGGAAGTTTGCTACAGACAACAGTTGCCACGTGACTCTGGTCATTCACCCTCGGAAAGAAGACGACGACAAGGAACTGCAGACAGCATCCATTTTCGGCTCAGCCAAA agtgtatgtggggaccttgtctagtctattaaacttttgctttgtttcagaATTGCAGCCCAAGAATACATTGTTGGAGCCTGTTGGAAGTTTGCAATGGACAATAGTTGCCATGTGACACTGGTCATCCACTCTCAGAAAGAAGATGATGACAAAGAACTGCAGACTGCATCAAACTTTGCATCCACCAAAgtaagtcagcattatgtgataacagtagatcatatactgagcaagatggg Alignment from Spaln_aa2Genome GATTGCAGCTCAAGACTACATTGTTGGAGCCTTTCGGAAGTTTGCTACAGACAACAGTTGCCACGTGACTCTGGTCATTCACCCTCGGAAAGAAGACGACGACAAGGAACTGCAGACAGCATCCATTTTCGGCTCAGCCAAA agtgtatgtggggaccttgtctagtctattaaacttttgctttgtttcagAATTGCAGCCCAAGAATACATTGTTGGAGCCTGTTGGAAGTTTGCAATGGACAATAGTTGCCATGTGACACTGGTCATCCACTCTCAGAAAGAAGATGATGACAAAGAACTGCAGACTGCATCAAACTTTGCATCCACCAAAgtaagtcagcattatgtgataacagtagatcatatactgagcaagatggg Alignment from Spaln_nt2Genome GATTGCAGCTCAAGACTACATTGTTGGAGCCTTTCGGAAGTTTGCTACAGACAACAGTTGCCACGTGACTCTGGTCATTCACCCTCGGAAAGAAGACGACGACAAGGAACTGCAGACAGCATCCATTTTCGGCTCAGCCAAA agtgtatgtggggaccttgtctagtctattaaacttttgctttgtttcagAATTGCAGCCCAAGAATACATTGTTGGAGCCTGTTGGAAGTTTGCAATGGACAATAGTTGCCATGTGACACTGGTCATCCACTCTCAGAAAGAAGATGATGACAAAGAACTGCAGACTGCATCAAACTTTGCATCCACCAAAgtaagtcagcattatgtgataacagtagatcatatactgagcaagatggg Alignment from Pairagon GATTGCAGCTCAAGACTACATTGTTGGAGCCTTTCGGAAGTTTGCTACAGACAACAGTTGCCACGTGACTCTGGTCATTCACCCTCGGAAAGAAGACGACGACAAGGAACTGCAGACAGCATCCATTTTCGGCTCAGCCAAA agtgtatgtggggaccttgtctagtctattaaacttttgctttgtttcagAATTGCAGCCCAAGAATACATTGTTGGAGCCTGTTGGAAGTTTGCAATGGACAATAGTTGCCATGTGACACTGGTCATCCACTCTCAGAAAGAAGATGATGACAAAGAACTGCAGACTGCATCAAACTTTGCATCCACCAAAgtaagtcagcattatgtgataacagtagatcatatactgagcaagatggg Alignment from Exonerate_protein2genome GATTGCAGCTCAAGACTACATTGTTGGAGCCTTTCGGAAGTTTGCTACAGACAACAGTTGCCACGTGACTCTGGTCATTCACCCTCGGAAAGAAGACGACGACAAGGAACTGCAGACAGCATCCATTTTCGGCTCAGCCAAA agtgtatgtggggaccttgtctagtctattaaacttttgctttgtttcagAATTGCAGCCCAAGAATACATTGTTGGAGCCTGTTGGAAGTTTGCAATGGACAATAGTTGCCATGTGACACTGGTCATCCACTCTCAGAAAGAAGATGATGACAAAGAACTGCAGACTGCATCAAACTTTGCATCCACCAAAgtaagtcagcattatgtgataacagtagatcatatactgagcaagatggg Alignment from Exonerate_coding2genome GATTGCAGCTCAAGACTACATTGTTGGAGCCTTTCGGAAGTTTGCTACAGACAACAGTTGCCACGTGACTCTGGTCATTCACCCTCGGAAAGAAGACGACGACAAGGAACTGCAGACAGCATCCATTTTCGGCTCAGCCAAA agtgtatgtggggaccttgtctagtctattaaacttttgctttgtttcagAATTGCAGCCCAAGAATACATTGTTGGAGCCTGTTGGAAGTTTGCAATGGACAATAGTTGCCATGTGACACTGGTCATCCACTCTCAGAAAGAAGATGATGACAAAGAACTGCAGACTGCATCAAACTTTGCATCCACCAAAgtaagtcagcattatgtgataacagtagatcatatactgagcaagatggg Alignment from GeneWise GATTGCAGCTCAAGACTACATTGTTGGAGCCTTTCGGAAGTTTGCTACAGACAACAGTTGCCACGTGACTCTGGTCATTCACCCTCGGAAAGAAGACGACGACAAGGAACTGCAGACAGCATCCATTTTCGGCTCAGCCAAA agtgtatgtggggaccttgtctagtctattaaacttttgctttgtttcagAATTGCAGCCCAAGAATACATTGTTGGAGCCTGTTGGAAGTTTGCAATGGACAATAGTTGCCATGTGACACTGGTCATCCACTCTCAGAAAGAAGATGATGACAAAGAACTGCAGACTGCATCAAACTTTGCATCCACCAAAgtaagtcagcattatgtgataacagtagatcatatactgagcaagatggg #### Pga5_ID2971_7 --> 1 - 0 Original Alignment cATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG TACTTCCTCAA gtttaaagagcattctgtgatatggctcgtgtgctgcgctttgcttgcagcAATTCCATGAATGGGGAGGCCATTGCATCAGATGGTAGCTGTCAAGGCATTATGGATACAGGGGCTTCATTGCTGACCAGGCCTCAAAGCACCATTGTTAATATCCAGAATGTATTTGGTTCCAAGGGGTCTGGTGACGGTCAGgtttgtgtttccggctatttctcactttggctgaggcagTATTTCCTAAA Alignment from CESAR cATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG TACTTCCTCAA gtttaaagagcattctgtgatatggctcgtgtgctgcgctttgcttgcagcAATTCCATGAATGGGGAGGCCATTGCATCAGATGGTAGCTGTCAAGGCATTATGGATACAGGGGCTTCATTGCTGACCAGGCCTCAAAGCACCATTGTTAATATCCAGAATGTATTTGGTTCCAAGGGGTCTGGTGACGGTCAGgtttgtgtttccggctacaaatgtcctttctgtccacagTATTTCCTAAA Alignment from Spaln_aa2Genome CATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG TACTTCCTCAA gtttaaagagcattctgtgatatggctcgtgtgctgcgctttgcttgcagCAATTCCATGAATGGGGAGGCCATTGCATCAGATGGTAGCTGTCAAGGCATTATGGATACAGGGGCTTCATTGCTGACCAGGCCTCAAAGCACCATTGTTAATATCCAGAATGTATTTGGTTCCAAGGGGTCTGGTGACGGTCAGgtttgtgtttccggctatttctcactttggctgaggcagTATTTCCTAAA Alignment from Spaln_nt2Genome CATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG TACTTCCTCAA gtttaaagagcattctgtgatatggctcgtgtgctgcgctttgcttgcagCAATTCCATGAATGGGGAGGCCATTGCATCAGATGGTAGCTGTCAAGGCATTATGGATACAGGGGCTTCATTGCTGACCAGGCCTCAAAGCACCATTGTTAATATCCAGAATGTATTTGGTTCCAAGGGGTCTGGTGACGGTCAGgtttgtgtttccggctatttctcactttggctgaggcagTATTTCCTAAA Alignment from Pairagon CATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGC---------------------------------------GAGTACTTCCTCAA gtttaaagagcattctgtgatatggctcgtgtgctgcgctttgcttgcagCAATTCCATGAATGGGGAGGCCATTGCATCAGATGGTAGCTGTCAAGGCATTATGGATACAGGGGCTTCATTGCTGACCAGGCCTCAAAGCACCATTGTTAATATCCAGAATGTATTTGGTTCCAAGGGGTCTGGTGACGGTCAGGTTTGTGTTTCCGGCTATTTCTCACTTTGGCTGAGGCAGTATTTCCTAAA Alignment from Exonerate_protein2genome CATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG TACTTCCTCAA gtttaaagagcattctgtgatatggctcgtgtgctgcgctttgcttgcagCAATTCCATGAATGGGGAGGCCATTGCATCAGATGGTAGCTGTCAAGGCATTATGGATACAGGGGCTTCATTGCTGACCAGGCCTCAAAGCACCATTGTTAATATCCAGAATGTATTTGGTTCCAAGGGGTCTGGTGACGGTCAGgtttgtgtttccggctatttctcactttggctgaggcagTATTTCCTAAA Alignment from Exonerate_coding2genome CATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG gtttaaagagcattctgtgatatggctcgtgtgctgcgctttgcttgcagCAATTCCATGAATGGGGAGGCCATTGCATCAGATGGTAGCTGTCAAGGCATTATGGATACAGGGGCTTCATTGCTGACCAGGCCTCAAAGCACCATTGTTAATATCCAGAATGTATTTGGTTCCAAGGGGTCTGGTGACGGTCAGgtttgtgtttccggctatttctcactttggctgaggcagtatttcctaaa Alignment from GeneWise CATCTCCATGAATGGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG---------------------------------------TACTTCCTCAA gtttaaagagcattctgtgatatggctcgtgtgctgcgctttgcttgcagCAATTCCATGAATGGGGAGGCCATTGCATCAGATGGTAGCTGTCAAGGCATTATGGATACAGGGGCTTCATTGCTGACCAGGCCTCAAAGCACCATTGTTAATATCCAGAATGTATTTGGTTCCAAGGGGTCTGGTGACGGTCAGGTTTGTGTTTCCGGCTATTTCTCACTTTGGCTGAGGCAGTATTTCCTAAA #### Pga5_ID2972_6 --> 1 - 2 Original Alignment cAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATag tcatacagtttgaagtaccctggagatttttatttttcctcacactatagtAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTGGACCCCTCCTACTACCATGGAGAACTTCATTGGGTACCTGTCTCAAAGCCGAGTTACTGGCAGTTAGCTGCAGATaggtgacccataggcacttgttgccaataggcactgtctcagcagcatgcat Alignment from CESAR cAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATag tcatacagtttgaagtaccctggagatttttatttttcctcacactatagtAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTGGACCCCTCCTACTACCATGGAGAACTTCATTGGGTACCTGTCTCAAAGCCGAGTTACTGGCAGTTAGCTGCAGATaggtgacccataggcacttgttgccaataggcactgtctcagcagcatgcat Alignment from Spaln_aa2Genome CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAG tcatacagtttgaagtaccctggagatttttatttttcctcacactatagTAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTGGACCCCTCCTACTACCATGGAGAACTTCATTGGGTACCTGTCTCAAAGCCGAGTTACTGGCAGTTAGCTGCAGATAGgtgacccataggcacttgttgccaataggcactgtctcagcagcatgcat Alignment from Spaln_nt2Genome CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAG tcatacagtttgaagtaccctggagatttttatttttcctcacactatagTAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTGGACCCCTCCTACTACCATGGAGAACTTCATTGGGTACCTGTCTCAAAGCCGAGTTACTGGCAGTTAGCTGCAGATAGgtgacccataggcacttgttgccaataggcactgtctcagcagcatgcat Alignment from Pairagon CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAG tcatacagtttgaagtaccctggagatttttatttttcctcacactatagTAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTGGACCCCTCCTACTACCATGGAGAACTTCATTGGGTACCTGTCTCAAAGCCGAGTTACTGGCAGTTAGCTGCAGATAGgtgacccataggcacttgttgccaataggcactgtctcagcagcatgcat Alignment from Exonerate_protein2genome CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAG tcatacagtttgaagtaccctggagatttttatttttcctcacactatagTAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTGGACCCCTCCTACTACCATGGAGAACTTCATTGGGTACCTGTCTCAAAGCCGAGTTACTGGCAGTTAGCTGCAGATAGgtgacccataggcacttgttgccaataggcactgtctcagcagcatgcat Alignment from Exonerate_coding2genome CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAG tcatacagtttgaagtaccctggagatttttatttttcctcacactatagTAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTGGACCCCTCCTACTACCATGGAGAACTTCATTGGGTACCTGTCTCAAAGCCGAGTTACTGGCAGTTAGCTGCAGATAGgtgacccataggcacttgttgccaataggcactgtctcagcagcatgcat Alignment from GeneWise CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAG tcatacagtttgaagtaccctggagatttttatttttcctcacactatagTAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTGGACCCCTCCTACTACCATGGAGAACTTCATTGGGTACCTGTCTCAAAGCCGAGTTACTGGCAGTTAGCTGCAGATAGgtgacccataggcacttgttgccaataggcactgtctcagcagcatgcat #### Pga5_ID2976_2 --> 1 - 0 Original Alignment aATCCCTCTGATGAAGATTAAGTCCATGCGTGAAAACCTGCGGGAAAGCCAAGTGCTGAAGGATTACCTGGAGAAGTACCCTCGAAGCCGTGCCCACGTGCTTCTTGAGCAGCGCCGGAACCCAGCCGTAACTTATGAGCCTATGAGGAACTACCTAGAC ttttgtttttccttgtactatttcactcttggtatctcttttgcccatagaATCCCTCTCATGAAGATCAGATCAATGCGTGAAAATCTGCGAGAAAGTCAAGTGCTAAAGGACTACTTGGAAAAATACCCTCGGAGTCGTGCCCAGGTGCTTCTTGAACAACGTCGTAACTCAGCTGCAAGCTATGAACCTATGAGAAACTACTTAGATgtaagttagctcaccttaacccttaggtatcccattgaggtctgttcagg Alignment from CESAR aATCCCTCTGATGAAGATTAAGTCCATGCGTGAAAACCTGCGGGAAAGCCAAGTGCTGAAGGATTACCTGGAGAAGTACCCTCGAAGCCGTGCCCACGTGCTTCTTGAGCAGCGCCGGAACCCAGCCGTAACTTATGAGCCTATGAGGAACTACCTAGAC ttttgtttttccttgtactatttcactcttggtatctcttttgcccatagaATCCCTCTCATGAAGATCAGATCAATGCGTGAAAATCTGCGAGAAAGTCAAGTGCTAAAGGACTACTTGGAAAAATACCCTCGGAGTCGTGCCCAGGTGCTTCTTGAACAACGTCGTAACTCAGCTGCAAGCTATGAACCTATGAGAAACTACTTAGATgtaagttagctcaccttaacccttaggtatcccattgaggtctgttcagg Alignment from Spaln_aa2Genome AATCCCTCTGATGAAGATTAAGTCCATGCGTGAAAACCTGCGGGAAAGCCAAGTGCTGAAGGATTACCTGGAGAAGTACCCTCGAAGCCGTGCCCACGTGCTTCTTGAGCAGCGCCGGAACCCAGCCGTAACTTATGAGCCTATGAGGAACTACCTAGAC ttttgtttttccttgtactatttcactcttggtatctcttttgcccatagAATCCCTCTCATGAAGATCAGATCAATGCGTGAAAATCTGCGAGAAAGTCAAGTGCTAAAGGACTACTTGGAAAAATACCCTCGGAGTCGTGCCCAGGTGCTTCTTGAACAACGTCGTAACTCAGCTGCAAGCTATGAACCTATGAGAAACTACTTAGATgtaagttagctcaccttaacccttaggtatcccattgaggtctgttcagg Alignment from Spaln_nt2Genome AATCCCTCTGATGAAGATTAAGTCCATGCGTGAAAACCTGCGGGAAAGCCAAGTGCTGAAGGATTACCTGGAGAAGTACCCTCGAAGCCGTGCCCACGTGCTTCTTGAGCAGCGCCGGAACCCAGCCGTAACTTATGAGCCTATGAGGAACTACCTAGAC ttttgtttttccttgtactatttcactcttggtatctcttttgcccatagAATCCCTCTCATGAAGATCAGATCAATGCGTGAAAATCTGCGAGAAAGTCAAGTGCTAAAGGACTACTTGGAAAAATACCCTCGGAGTCGTGCCCAGGTGCTTCTTGAACAACGTCGTAACTCAGCTGCAAGCTATGAACCTATGAGAAACTACTTAGATgtaagttagctcaccttaacccttaggtatcccattgaggtctgttcagg Alignment from Pairagon AATCCCTCTGATGAAGATTAAGTCCATGCGTGAAAACCTGCGGGAAAGCCAAGTGCTGAAGGATTACCTGGAGAAGTACCCTCGAAGCCGTGCCCACGTGCTTCTTGAGCAGCGCCGGAACCCAGCCGTAACTTATGAGCCTATGAGGAACTACCTAGAC ttttgtttttccttgtactatttcactcttggtatctcttttgcccatagAATCCCTCTCATGAAGATCAGATCAATGCGTGAAAATCTGCGAGAAAGTCAAGTGCTAAAGGACTACTTGGAAAAATACCCTCGGAGTCGTGCCCAGGTGCTTCTTGAACAACGTCGTAACTCAGCTGCAAGCTATGAACCTATGAGAAACTACTTAGATgtaagttagctcaccttaacccttaggtatcccattgaggtctgttcagg Alignment from Exonerate_protein2genome AATCCCTCTGATGAAGATTAAGTCCATGCGTGAAAACCTGCGGGAAAGCCAAGTGCTGAAGGATTACCTGGAGAAGTACCCTCGAAGCCGTGCCCACGTGCTTCTTGAGCAGCGCCGGAACCCAGCCGTAACTTATGAGCCTATGAGGAACTACCTAGAC ttttgtttttccttgtactatttcactcttggtatctcttttgcccatagAATCCCTCTCATGAAGATCAGATCAATGCGTGAAAATCTGCGAGAAAGTCAAGTGCTAAAGGACTACTTGGAAAAATACCCTCGGAGTCGTGCCCAGGTGCTTCTTGAACAACGTCGTAACTCAGCTGCAAGCTATGAACCTATGAGAAACTACTTAGATgtaagttagctcaccttaacccttaggtatcccattgaggtctgttcagg Alignment from Exonerate_coding2genome ttttgtttttccttgtactatttcactcttggtatctcttttgcccatagaatccctctcatgaagatcagatcaatgcgtgaaaatctgcgagaaagtcaagtgctaaaggactacttggaaaaataccctcggagtcgtgcccaggtgcttcttgaacaacgtcgtaactcagctgcaagctatgaacctatgagaaactacttagatgtaagttagctcaccttaacccttaggtatcccattgaggtctgttcagg Alignment from GeneWise AATCCCTCTGATGAAGATTAAGTCCATGCGTGAAAACCTGCGGGAAAGCCAAGTGCTGAAGGATTACCTGGAGAAGTACCCTCGAAGCCGTGCCCACGTGCTTCTTGAGCAGCGCCGGAACCCAGCCGTAACTTATGAGCCTATGAGGAACTACCTAGAC ttttgtttttccttgtactatttcactcttggtatctcttttgcccatagAATCCCTCTCATGAAGATCAGATCAATGCGTGAAAATCTGCGAGAAAGTCAAGTGCTAAAGGACTACTTGGAAAAATACCCTCGGAGTCGTGCCCAGGTGCTTCTTGAACAACGTCGTAACTCAGCTGCAAGCTATGAACCTATGAGAAACTACTTAGATgtaagttagctcaccttaacccttaggtatcccattgaggtctgttcagg #### Pgam1_ID8326_2 --> 2 - 0 Original Alignment atGCTGGCTATGAATTTGACATCTGCTTCACCTCTGTGCAGAAGAGAGCAATCCGGACCCTCTGGACAGTCCTGGATGCCATTGACCAGATGTGGTTGCCAGTGGTCAGGACTTGGCGCCTCAATGAGCGACACTATGGCGGTCTGACAGGTCTCAACAAAGCAGAAACTGCTGCTAAGCATGGTGAGGCCCAGGTAAAGATCTGGAGACGATCTTATGATGTCCCACCGCCTCCCATGGAGCCTGATCACCCCTTCTACAGCAACATCAGCAAG tgtgcttaggggtaggaaaattaacctcaagggtttgttctttttttcagatGCTGGATACGAATTTGACATCTGTTTCAGCTCTGTGCAGAAGAGAGCAATCCGGACTCTCTGGACCGTCCTGGATGCCATTGATCAGATGTGGCTGCCAGTGGTTAGGACTTGGCGTCTCAATGAGCGACACTTTGGGGGACTTACAGGCCTCAATAGGGCAGAAACTGCTGCTAAACATGGTGAGGCTCAAGTCAAGATCTGGAAACGGACTTATGATGTCCCACCACCTCCCATGGAGCCTGATCACCCCTTCTACAGAAACATCAGTAAGgtaagttcagatcgaaaggtaacctggacaacagggtgaaacactggccc Alignment from CESAR atGCTGGCTATGAATTTGACATCTGCTTCACCTCTGTGCAGAAGAGAGCAATCCGGACCCTCTGGACAGTCCTGGATGCCATTGACCAGATGTGGTTGCCAGTGGTCAGGACTTGGCGCCTCAATGAGCGACACTATGGCGGTCTGACAGGTCTCAACAAAGCAGAAACTGCTGCTAAGCATGGTGAGGCCCAGGTAAAGATCTGGAGACGATCTTATGATGTCCCACCGCCTCCCATGGAGCCTGATCACCCCTTCTACAGCAACATCAGCAAG tgtgcttaggggtaggaaaattaacctcaagggtttgttctttttttcagatGCTGGATACGAATTTGACATCTGTTTCAGCTCTGTGCAGAAGAGAGCAATCCGGACTCTCTGGACCGTCCTGGATGCCATTGATCAGATGTGGCTGCCAGTGGTTAGGACTTGGCGTCTCAATGAGCGACACTTTGGGGGACTTACAGGCCTCAATAGGGCAGAAACTGCTGCTAAACATGGTGAGGCTCAAGTCAAGATCTGGAAACGGACTTATGATGTCCCACCACCTCCCATGGAGCCTGATCACCCCTTCTACAGAAACATCAGTAAGgtaagttcagatcgaaaggtaacctggacaacagggtgaaacactggccc Alignment from Spaln_aa2Genome ATGCTGGCTATGAATTTGACATCTGCTTCACCTCTGTGCAGAAGAGAGCAATCCGGACCCTCTGGACAGTCCTGGATGCCATTGACCAGATGTGGTTGCCAGTGGTCAGGACTTGGCGCCTCAATGAGCGACACTATGGCGGTCTGACAGGTCTCAACAAAGCAGAAACTGCTGCTAAGCATGGTGAGGCCCAGGTAAAGATCTGGAGACGATCTTATGATGTCCCACCGCCTCCCATGGAGCCTGATCACCCCTTCTACAGCAACATCAGCAAG tgtgcttaggggtaggaaaattaacctcaagggtttgttctttttttcagATGCTGGATACGAATTTGACATCTGTTTCAGCTCTGTGCAGAAGAGAGCAATCCGGACTCTCTGGACCGTCCTGGATGCCATTGATCAGATGTGGCTGCCAGTGGTTAGGACTTGGCGTCTCAATGAGCGACACTTTGGGGGACTTACAGGCCTCAATAGGGCAGAAACTGCTGCTAAACATGGTGAGGCTCAAGTCAAGATCTGGAAACGGACTTATGATGTCCCACCACCTCCCATGGAGCCTGATCACCCCTTCTACAGAAACATCAGTAAGgtaagttcagatcgaaaggtaacctggacaacagggtgaaacactggccc Alignment from Spaln_nt2Genome ATGCTGGCTATGAATTTGACATCTGCTTCACCTCTGTGCAGAAGAGAGCAATCCGGACCCTCTGGACAGTCCTGGATGCCATTGACCAGATGTGGTTGCCAGTGGTCAGGACTTGGCGCCTCAATGAGCGACACTATGGCGGTCTGACAGGTCTCAACAAAGCAGAAACTGCTGCTAAGCATGGTGAGGCCCAGGTAAAGATCTGGAGACGATCTTATGATGTCCCACCGCCTCCCATGGAGCCTGATCACCCCTTCTACAGCAACATCAGCAAG tgtgcttaggggtaggaaaattaacctcaagggtttgttctttttttcagATGCTGGATACGAATTTGACATCTGTTTCAGCTCTGTGCAGAAGAGAGCAATCCGGACTCTCTGGACCGTCCTGGATGCCATTGATCAGATGTGGCTGCCAGTGGTTAGGACTTGGCGTCTCAATGAGCGACACTTTGGGGGACTTACAGGCCTCAATAGGGCAGAAACTGCTGCTAAACATGGTGAGGCTCAAGTCAAGATCTGGAAACGGACTTATGATGTCCCACCACCTCCCATGGAGCCTGATCACCCCTTCTACAGAAACATCAGTAAGgtaagttcagatcgaaaggtaacctggacaacagggtgaaacactggccc Alignment from Pairagon ATGCTGGCTATGAATTTGACATCTGCTTCACCTCTGTGCAGAAGAGAGCAATCCGGACCCTCTGGACAGTCCTGGATGCCATTGACCAGATGTGGTTGCCAGTGGTCAGGACTTGGCGCCTCAATGAGCGACACTATGGCGGTCTGACAGGTCTCAACAAAGCAGAAACTGCTGCTAAGCATGGTGAGGCCCAGGTAAAGATCTGGAGACGATCTTATGATGTCCCACCGCCTCCCATGGAGCCTGATCACCCCTTCTACAGCAACATCAGCAAG tgtgcttaggggtaggaaaattaacctcaagggtttgttctttttttcagATGCTGGATACGAATTTGACATCTGTTTCAGCTCTGTGCAGAAGAGAGCAATCCGGACTCTCTGGACCGTCCTGGATGCCATTGATCAGATGTGGCTGCCAGTGGTTAGGACTTGGCGTCTCAATGAGCGACACTTTGGGGGACTTACAGGCCTCAATAGGGCAGAAACTGCTGCTAAACATGGTGAGGCTCAAGTCAAGATCTGGAAACGGACTTATGATGTCCCACCACCTCCCATGGAGCCTGATCACCCCTTCTACAGAAACATCAGTAAGgtaagttcagatcgaaaggtaacctggacaacagggtgaaacactggccc Alignment from Exonerate_protein2genome ATGCTGGCTATGAATTTGACATCTGCTTCACCTCTGTGCAGAAGAGAGCAATCCGGACCCTCTGGACAGTCCTGGATGCCATTGACCAGATGTGGTTGCCAGTGGTCAGGACTTGGCGCCTCAATGAGCGACACTATGGCGGTCTGACAGGTCTCAACAAAGCAGAAACTGCTGCTAAGCATGGTGAGGCCCAGGTAAAGATCTGGAGACGATCTTATGATGTCCCACCGCCTCCCATGGAGCCTGATCACCCCTTCTACAGCAACATCAGCAAG tgtgcttaggggtaggaaaattaacctcaagggtttgttctttttttcagATGCTGGATACGAATTTGACATCTGTTTCAGCTCTGTGCAGAAGAGAGCAATCCGGACTCTCTGGACCGTCCTGGATGCCATTGATCAGATGTGGCTGCCAGTGGTTAGGACTTGGCGTCTCAATGAGCGACACTTTGGGGGACTTACAGGCCTCAATAGGGCAGAAACTGCTGCTAAACATGGTGAGGCTCAAGTCAAGATCTGGAAACGGACTTATGATGTCCCACCACCTCCCATGGAGCCTGATCACCCCTTCTACAGAAACATCAGTAAGgtaagttcagatcgaaaggtaacctggacaacagggtgaaacactggccc Alignment from Exonerate_coding2genome ATGCTGGCTATGAATTTGACATCTGCTTCACCTCTGTGCAGAAGAGAGCAATCCGGACCCTCTGGACAGTCCTGGATGCCATTGACCAGATGTGGTTGCCAGTGGTCAGGACTTGGCGCCTCAATGAGCGACACTATGGCGGTCTGACAGGTCTCAACAAAGCAGAAACTGCTGCTAAGCATGGTGAGGCCCAGGTAAAGATCTGGAGACGATCTTATGATGTCCCACCGCCTCCCATGGAGCCTGATCACCCCTTCTACAGCAACATCAGCAAG tgtgcttaggggtaggaaaattaacctcaagggtttgttctttttttcagATGCTGGATACGAATTTGACATCTGTTTCAGCTCTGTGCAGAAGAGAGCAATCCGGACTCTCTGGACCGTCCTGGATGCCATTGATCAGATGTGGCTGCCAGTGGTTAGGACTTGGCGTCTCAATGAGCGACACTTTGGGGGACTTACAGGCCTCAATAGGGCAGAAACTGCTGCTAAACATGGTGAGGCTCAAGTCAAGATCTGGAAACGGACTTATGATGTCCCACCACCTCCCATGGAGCCTGATCACCCCTTCTACAGAAACATCAGTAAGgtaagttcagatcgaaaggtaacctggacaacagggtgaaacactggccc Alignment from GeneWise ATGCTGGCTATGAATTTGACATCTGCTTCACCTCTGTGCAGAAGAGAGCAATCCGGACCCTCTGGACAGTCCTGGATGCCATTGACCAGATGTGGTTGCCAGTGGTCAGGACTTGGCGCCTCAATGAGCGACACTATGGCGGTCTGACAGGTCTCAACAAAGCAGAAACTGCTGCTAAGCATGGTGAGGCCCAGGTAAAGATCTGGAGACGATCTTATGATGTCCCACCGCCTCCCATGGAGCCTGATCACCCCTTCTACAGCAACATCAGCAAG tgtgcttaggggtaggaaaattaacctcaagggtttgttctttttttcagATGCTGGATACGAATTTGACATCTGTTTCAGCTCTGTGCAGAAGAGAGCAATCCGGACTCTCTGGACCGTCCTGGATGCCATTGATCAGATGTGGCTGCCAGTGGTTAGGACTTGGCGTCTCAATGAGCGACACTTTGGGGGACTTACAGGCCTCAATAGGGCAGAAACTGCTGCTAAACATGGTGAGGCTCAAGTCAAGATCTGGAAACGGACTTATGATGTCCCACCACCTCCCATGGAGCCTGATCACCCCTTCTACAGAAACATCAGTAAGgtaagttcagatcgaaaggtaacctggacaacagggtgaaacactggccc #### Pik3ap1_ID8153_16 --> 0 - 2 Original Alignment GACAACGAAATCCCCGAAATTACCCGGAGTCGTGGCCCAGGTCCTACGCAGGTGGACGGAGCTCCAGTTGTGACCGGAACACCAGTCGGGACCCTTGAGAGACCCCCTAGGGTGCCTCCTCGAGCCGCTTCTCAGag tgacaaggttacttgtcttttgccactacttcttcttattccctttgcagGACAATGAAATTCCCAAAATTACCCGAAGTCGTGGTCCTGGCCCAACACATGTTGATGGTGCTCCTGTTATTTCTGGAACACCTGTGGGGACACTTGAGAGACCCCCTAGGGTATCACCCCGAGCTGCATCACAGcggtaagtatgttaggccccatgatggccatgtaattattgctgattagatt Alignment from CESAR GACAACGAAATCCCCGAAATTACCCGGAGTCGTGGCCCAGGTCCTACGCAGGTGGACGGAGCTCCAGTTGTGACCGGAACACCAGTCGGGACCCTTGAGAGACCCCCTAGGGTGCCTCCTCGAGCCGCTTCTCAGag tgacaaggttacttgtcttttgccactacttcttcttattccctttgcagGACAATGAAATTCCCAAAATTACCCGAAGTCGTGGTCCTGGCCCAACACATGTTGATGGTGCTCCTGTTATTTCTGGAACACCTGTGGGGACACTTGAGAGACCCCCTAGGGTATCACCCCGAGCTGCATCACAGcggtaagtatgttaggccccatgatggccatgtaattattgctgattagatt Alignment from Spaln_aa2Genome GACAACGAAATCCCCGAAATTACCCGGAGTCGTGGCCCAGGTCCTACGCAGGTGGACGGAGCTCCAGTTGTGACCGGAACACCAGTCGGGACCCTTGAGAGACCCCCTAGGGTGCCTCCTCGAGCCGCTTCTCAGAG tgacaaggttacttgtcttttgccactacttcttcttattccctttgcagGACAATGAAATTCCCAAAATTACCCGAAGTCGTGGTCCTGGCCCAACACATGTTGATGGTGCTCCTGTTATTTCTGGAACACCTGTGGGGACACTTGAGAGACCCCCTAGGGTATCACCCCGAGCTGCATCACAGCGgtaagtatgttaggccccatgatggccatgtaattattgctgattagatt Alignment from Spaln_nt2Genome GACAACGAAATCCCCGAAATTACCCGGAGTCGTGGCCCAGGTCCTACGCAGGTGGACGGAGCTCCAGTTGTGACCGGAACACCAGTCGGGACCCTTGAGAGACCCCCTAGGGTGCCTCCTCGAGCCGCTTCTCAGAG tgacaaggttacttgtcttttgccactacttcttcttattccctttgcagGACAATGAAATTCCCAAAATTACCCGAAGTCGTGGTCCTGGCCCAACACATGTTGATGGTGCTCCTGTTATTTCTGGAACACCTGTGGGGACACTTGAGAGACCCCCTAGGGTATCACCCCGAGCTGCATCACAGCGgtaagtatgttaggccccatgatggccatgtaattattgctgattagatt Alignment from Pairagon GACAACGAAATCCCCGAAATTACCCGGAGTCGTGGCCCAGGTCCTACGCAGGTGGACGGAGCTCCAGTTGTGACCGGAACACCAGTCGGGACCCTTGAGAGACCCCCTAGGGTGCCTCCTCGAGCCGCTTCTCAGAG tgacaaggttacttgtcttttgccactacttcttcttattccctttgcagGACAATGAAATTCCCAAAATTACCCGAAGTCGTGGTCCTGGCCCAACACATGTTGATGGTGCTCCTGTTATTTCTGGAACACCTGTGGGGACACTTGAGAGACCCCCTAGGGTATCACCCCGAGCTGCATCACAGCGgtaagtatgttaggccccatgatggccatgtaattattgctgattagatt Alignment from Exonerate_protein2genome GACAACGAAATCCCCGAAATTACCCGGAGTCGTGGCCCAGGTCCTACGCAGGTGGACGGAGCTCCAGTTGTGACCGGAACACCAGTCGGGACCCTTGAGAGACCCCCTAGGGTGCCTCCTCGAGCCGCTTCTCAGAG tgacaaggttacttgtcttttgccactacttcttcttattccctttgcagGACAATGAAATTCCCAAAATTACCCGAAGTCGTGGTCCTGGCCCAACACATGTTGATGGTGCTCCTGTTATTTCTGGAACACCTGTGGGGACACTTGAGAGACCCCCTAGGGTATCACCCCGAGCTGCATCACAGCGgtaagtatgttaggccccatgatggccatgtaattattgctgattagatt Alignment from Exonerate_coding2genome GACAACGAAATCCCCGAAATTACCCGGAGTCGTGGCCCAGGTCCTACGCAGGTGGACGGAGCTCCAGTTGTGACCGGAACACCAGTCGGGACCCTTGAGAGACCCCCTAGGGTGCCTCCTCGAGCCGCTTCTCAGAG tgacaaggttacttgtcttttgccactacttcttcttattccctttgcagGACAATGAAATTCCCAAAATTACCCGAAGTCGTGGTCCTGGCCCAACACATGTTGATGGTGCTCCTGTTATTTCTGGAACACCTGTGGGGACACTTGAGAGACCCCCTAGGGTATCACCCCGAGCTGCATCACAGCGgtaagtatgttaggccccatgatggccatgtaattattgctgattagatt Alignment from GeneWise GACAACGAAATCCCCGAAATTACCCGGAGTCGTGGCCCAGGTCCTACGCAGGTGGACGGAGCTCCAGTTGTGACCGGAACACCAGTCGGGACCCTTGAGAGACCCCCTAGGGTGCCTCCTCGAGCCGCTTCTCAGAGG tgacaaggttacttgtcttttgccactacttcttcttattccctttgcagGACAATGAAATTCCCAAAATTACCCGAAGTCGTGGTCCTGGCCCAACACATGTTGATGGTGCTCCTGTTATTTCTGGAACACCTGTGGGGACACTTGAGAGACCCCCTAGGGTATCACCCCGAGCTGCATCACAGCGGtaagtatgttaggccccatgatggccatgtaattattgctgattagatt #### Pik3ap1_ID8163_6 --> 0 - 1 Original Alignment GCCTTTAAAATCGTGCCCTACAACACAGAGACTCTCGATAAACTGCTCACCGAGTCCCTGAAGAACAACATCCCCGCAAGTGGACTGCACCTCTTTGGGATCAACCAACTGGAAGAAGACGATATGATGACAa ccaactcaacaccaacatcagcaacatatttctatttcacatcaatgcagGCCTTTAAGATGGTGCCATACAATACAGAGACTCTTGATAAATTGCTTATTGAGTCTCTGAAGAACAATGTCCCTGCAGGCGGACTGCATCTCTTTGGCATCAACCAACTGGAAGAAGATGATATGATGACAagtatgttgacagtcccttgacttacaggtaggagtgtgtaccatatgcct Alignment from CESAR GCCTTTAAAATCGTGCCCTACAACACAGAGACTCTCGATAAACTGCTCACCGAGTCCCTGAAGAACAACATCCCCGCAAGTGGACTGCACCTCTTTGGGATCAACCAACTGGAAGAAGACGATATGATGACAa ccaactcaacaccaacatcagcaacatatttctatttcacatcaatgcagGCCTTTAAGATGGTGCCATACAATACAGAGACTCTTGATAAATTGCTTATTGAGTCTCTGAAGAACAATGTCCCTGCAGGCGGACTGCATCTCTTTGGCATCAACCAACTGGAAGAAGATGATATGATGACAagtatgttgacagtcccttgacttacaggtaggagtgtgtaccatatgcct Alignment from Spaln_aa2Genome GCCTTTAAAATCGTGCCCTACAACACAGAGACTCTCGATAAACTGCTCACCGAGTCCCTGAAGAACAACATCCCCGCAAGTGGACTGCACCTCTTTGGGATCAACCAACTGGAAGAAGACGATATGATGACAA ccaactcaacaccaacatcagcaacatatttctatttcacatcaatgcagGCCTTTAAGATGGTGCCATACAATACAGAGACTCTTGATAAATTGCTTATTGAGTCTCTGAAGAACAATGTCCCTGCAGGCGGACTGCATCTCTTTGGCATCAACCAACTGGAAGAAGATGATATGATGACAAgtatgttgacagtcccttgacttacaggtaggagtgtgtaccatatgcct Alignment from Spaln_nt2Genome GCCTTTAAAATCGTGCCCTACAACACAGAGACTCTCGATAAACTGCTCACCGAGTCCCTGAAGAACAACATCCCCGCAAGTGGACTGCACCTCTTTGGGATCAACCAACTGGAAGAAGACGATATGATGACAA ccaactcaacaccaacatcagcaacatatttctatttcacatcaatgcagGCCTTTAAGATGGTGCCATACAATACAGAGACTCTTGATAAATTGCTTATTGAGTCTCTGAAGAACAATGTCCCTGCAGGCGGACTGCATCTCTTTGGCATCAACCAACTGGAAGAAGATGATATGATGACAAgtatgttgacagtcccttgacttacaggtaggagtgtgtaccatatgcct Alignment from Pairagon GCCTTTAAAATCGTGCCCTACAACACAGAGACTCTCGATAAACTGCTCACCGAGTCCCTGAAGAACAACATCCCCGCAAGTGGACTGCACCTCTTTGGGATCAACCAACTGGAAGAAGACGATATGATGACAA ccaactcaacaccaacatcagcaacatatttctatttcacatcaatgcagGCCTTTAAGATGGTGCCATACAATACAGAGACTCTTGATAAATTGCTTATTGAGTCTCTGAAGAACAATGTCCCTGCAGGCGGACTGCATCTCTTTGGCATCAACCAACTGGAAGAAGATGATATGATGACAAgtatgttgacagtcccttgacttacaggtaggagtgtgtaccatatgcct Alignment from Exonerate_protein2genome GCCTTTAAAATCGTGCCCTACAACACAGAGACTCTCGATAAACTGCTCACCGAGTCCCTGAAGAACAACATCCCCGCAAGTGGACTGCACCTCTTTGGGATCAACCAACTGGAAGAAGACGATATGATGACAA ccaactcaacaccaacatcagcaacatatttctatttcacatcaatgcagGCCTTTAAGATGGTGCCATACAATACAGAGACTCTTGATAAATTGCTTATTGAGTCTCTGAAGAACAATGTCCCTGCAGGCGGACTGCATCTCTTTGGCATCAACCAACTGGAAGAAGATGATATGATGACAAgtatgttgacagtcccttgacttacaggtaggagtgtgtaccatatgcct Alignment from Exonerate_coding2genome GCCTTTAAAATCGTGCCCTACAACACAGAGACTCTCGATAAACTGCTCACCGAGTCCCTGAAGAACAACATCCCCGCAAGTGGACTGCACCTCTTTGGGATCAACCAACTGGAAGAAGACGATATGATGACAA ccaactcaacaccaacatcagcaacatatttctatttcacatcaatgcagGCCTTTAAGATGGTGCCATACAATACAGAGACTCTTGATAAATTGCTTATTGAGTCTCTGAAGAACAATGTCCCTGCAGGCGGACTGCATCTCTTTGGCATCAACCAACTGGAAGAAGATGATATGATGACAAgtatgttgacagtcccttgacttacaggtaggagtgtgtaccatatgcct Alignment from GeneWise -----------------------------------------------CAGGCCTTTAAAATCGTGCCCTACAACACAGAGACTCTCGATAAACTGCTCACCGAGTCCCTGAAGAACAACATCCCCGCAAGTGGACTGCACCTCTTTGGGATCAACCAACTGGAAGAAGACGATATGATGACAA CCAACTCAACACCAACATCAGCAACATATTTCTATTTCACATCAATGCAGGCCTTTAAGATGGTGCCATACAATACAGAGACTCTTGATAAATTGCTTATTGAGTCTCTGAAGAACAATGTCCCTGCAGGCGGACTGCATCTCTTTGGCATCAACCAACTGGAAGAAGATGATATGATGACAAgtatgttgacagtcccttgacttacaggtaggagtgtgtaccatatgcct #### Pik3ap1_ID8173_2 --> 2 - 1 Original Alignment ggTGGGGCCGGGGATGCGACATCCTCATCTTCTACAGCCCAGATGCGGAGGAATGGTGTCAGTACCTACAGGATCTTTTCGTGTCCTGCCGGCAGGTTCGTAGCCAGAAGACGCAGACATACCGGCTGGTCCCGGATGCCTCTTTCTCTGCCCAGGACCTGTGGGTCTTCAGGGATGCGCGATGCGTGCTGGTGCTACTGTCGGCGGGGCTGGTAGGATGCTTCGGCCAGCCAGGACTGCTGCCAATGCTGCAGCGTGCCTGCCATCCGCCGCAGCGTGTGGTGCGGCTGTTGTGTGGAGTGCAGCCAGGCGACGAGGACTTCCAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAAATGACTTGTGATGATGAGCCAGAGACCTACCTGGCGGCTGTGAGGAAGGCCATTTCTGAAg ttggataatccaatgtaggtaagctcatacaagggctttctcatctttagggTGGGGCCGGGGATGTGACATCCTCATCTTCTACAGCCCAGATGCCGAAGAATGGTGTCAATACCTACAGGATCTTTTTGTTTCCTGCCGGCAGGTGCGTAGTCAGAAGATACAGACATATGAA------CCTGATGCCTCTTTCCCTGCCCAGGACTTGTGGGTCTGTAGGGACACACAATGTGTGCTGGTGCTTCTATCAGTAGGGCATGTAGGATGTTTCAGCCAGGCAGAGTTGCTCACAATGCGACAGTGTGCTTGTCATCCACCTCAGCGTGTGGTGCGGCTACTATGTGGCATATTGTCAGGA---GAGGACTTACAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAGATGGCTTGTGATGATGAACCAGAAACATATCTGGCACCGGTGAGAAAGGCTATTTCTGAAggtaacgactacagcactgcagtaaaaagttcaatatcaattactgaacca Alignment from CESAR ggTGGGGCCGGGGATGCGACATCCTCATCTTCTACAGCCCAGATGCGGAGGAATGGTGTCAGTACCTACAGGATCTTTTCGTGTCCTGCCGGCAGGTTCGTAGCCAGAAGACGCAGACATACCGGCTGGTCCCGGATGCCTCTTTCTCTGCCCAGGACCTGTGGGTCTTCAGGGATGCGCGATGCGTGCTGGTGCTACTGTCGGCGGGGCTGGTAGGATGCTTCGGCCAGCCAGGACTGCTGCCAATGCTGCAGCGTGCCTGCCATCCGCCGCAGCGTGTGGTGCGGCTGTTGTGTGGAGTGCAGCCAGGCGACGAGGACTTCCAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAAATGACTTGTGATGATGAGCCAGAGACCTACCTGGCGGCTGTGAGGAAGGCCATTTCTGAAg ttggataatccaatgtaggtaagctcatacaagggctttctcatctttagggTGGGGCCGGGGATGTGACATCCTCATCTTCTACAGCCCAGATGCCGAAGAATGGTGTCAATACCTACAGGATCTTTTTGTTTCCTGCCGGCAGGTGCGTAGTCAGAAGATACAGACATATGAA------CCTGATGCCTCTTTCCCTGCCCAGGACTTGTGGGTCTGTAGGGACACACAATGTGTGCTGGTGCTTCTATCAGTAGGGCATGTAGGATGTTTCAGCCAGGCAGAGTTGCTCACAATGCGACAGTGTGCTTGTCATCCACCTCAGCGTGTGGTGCGGCTACTATGTGGCATATTGTCAGGA---GAGGACTTACAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAGATGGCTTGTGATGATGAACCAGAAACATATCTGGCACCGGTGAGAAAGGCTATTTCTGAAggtaacgactacagcactgcagtaaaaagttcaatatcaattactgaacca Alignment from Spaln_aa2Genome GGTGGGGCCGGGGATGCGACATCCTCATCTTCTACAGCCCAGATGCGGAGGAATGGTGTCAGTACCTACAGGATCTTTTCGTGTCCTGCCGGCAGGTTCGTAGCCAGAAGACGCAGACATACCGGCTGGTCCCGGATGCCTCTTTCTCTGCCCAGGACCTGTGGGTCTTCAGGGATGCGCGATGCGTGCTGGTGCTACTGTCGGCGGGGCTGGTAGGATGCTTCGGCCAGCCAGGACTGCTGCCAATGCTGCAGCGTGCCTGCCATCCGCCGCAGCGTGTGGTGCGGCTGTTGTGTGGAGTGCAGCCAGGCGACGAGGACTTCCAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAAATGACTTGTGATGATGAGCCAGAGACCTACCTGGCGGCTGTGAGGAAGGCCATTTCTGAAG ttggataatccaatgtaggtaagctcatacaagggctttctcatctttagGGTGGGGCCGGGGATGTGACATCCTCATCTTCTACAGCCCAGATGCCGAAGAATGGTGTCAATACCTACAGGATCTTTTTGTTTCCTGCCGGCAGGTGCGTAGTCAGAAGATACAGACATATGAA------CCTGATGCCTCTTTCCCTGCCCAGGACTTGTGGGTCTGTAGGGACACACAATGTGTGCTGGTGCTTCTATCAGTAGGGCATGTAGGATGTTTCAGCCAGGCAGAGTTGCTCACAATGCGACAGTGTGCTTGTCATCCACCTCAGCGTGTGGTGCGGCTACTATGTGGCATATTGTCAGGA---GAGGACTTACAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAGATGGCTTGTGATGATGAACCAGAAACATATCTGGCACCGGTGAGAAAGGCTATTTCTGAAGgtaacgactacagcactgcagtaaaaagttcaatatcaattactgaacca Alignment from Spaln_nt2Genome GGTGGGGCCGGGGATGCGACATCCTCATCTTCTACAGCCCAGATGCGGAGGAATGGTGTCAGTACCTACAGGATCTTTTCGTGTCCTGCCGGCAGGTTCGTAGCCAGAAGACGCAGACATACCGGCTGGTCCCGGATGCCTCTTTCTCTGCCCAGGACCTGTGGGTCTTCAGGGATGCGCGATGCGTGCTGGTGCTACTGTCGGCGGGGCTGGTAGGATGCTTCGGCCAGCCAGGACTGCTGCCAATGCTGCAGCGTGCCTGCCATCCGCCGCAGCGTGTGGTGCGGCTGTTGTGTGGAGTGCAGCCAGGCGACGAGGACTTCCAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAAATGACTTGTGATGATGAGCCAGAGACCTACCTGGCGGCTGTGAGGAAGGCCATTTCTGAAG ttggataatccaatgtaggtaagctcatacaagggctttctcatctttagGGTGGGGCCGGGGATGTGACATCCTCATCTTCTACAGCCCAGATGCCGAAGAATGGTGTCAATACCTACAGGATCTTTTTGTTTCCTGCCGGCAGGTGCGTAGTCAGAAGATACAGACATA------TGAACCTGATGCCTCTTTCCCTGCCCAGGACTTGTGGGTCTGTAGGGACACACAATGTGTGCTGGTGCTTCTATCAGTAGGGCATGTAGGATGTTTCAGCCAGGCAGAGTTGCTCACAATGCGACAGTGTGCTTGTCATCCACCTCAGCGTGTGGTGCGGCTACTATGTGGCATATTGTCAGG---AGAGGACTTACAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAGATGGCTTGTGATGATGAACCAGAAACATATCTGGCACCGGTGAGAAAGGCTATTTCTGAAGgtaacgactacagcactgcagtaaaaagttcaatatcaattactgaacca Alignment from Pairagon GCAGCCTCAGGGTGGGGCCGGGGATGCGACATCCTCATCTTCTACAGCCCAGATGCGGAGGAATGGTGTCAGTACCTACAGGATCTTTTCGTGTCCTGCCGGCAGGTTCGTAGCCAGAAGACGCAGACATACCGGCTGGTCCCGGATGCCTCTTTCTCTGCCCAGGACCTGTGGGTCTTCAGGGATGCGCGATGCGTGCTGGTGCTACTGTCGGCGGGGCTGGTAGGATGCTTCGGCCAGCCAGGACTGCTGCCAATGCTGCAGCGTGCCTGCCATCCGCCGCAGCGTGTGGTGCGGCTGTTGTGTGGAGTGCAGCCAGGCGAC------------GAGGACTTCCAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAAATGACTTGTGATGATGAGCCAGAGACCTACCTGGCGGCTGTGAGGAAGGCCATTTCTGAAG ttggataatccaatgtaggtaagctcatacaagggctttcTCATCTTTAGGGTGGGGCCGGGGATGTGACATCCTCATCTTCTACAGCCCAGATGCCGAAGAATGGTGTCAATACCTACAGGATCTTTTTGTTTCCTGCCGGCAGGTGCGTAGTCAGAAGATACAGACATAT------GAACCTGATGCCTCTTTCCCTGCCCAGGACTTGTGGGTCTGTAGGGACACACAATGTGTGCTGGTGCTTCTATCAGTAGGGCATGTAGGATGTTTCAGCCAGGCAGAGTTGCTCACAATGCGACAGTGTGCTTGTCATCCACCTCAGCGTGTGGTGCGGCTACTATGTGG---------------CATATTGTCAGGAGAGGACTTACAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAGATGGCTTGTGATGATGAACCAGAAACATATCTGGCACCGGTGAGAAAGGCTATTTCTGAAGgtaacgactacagcactgcagtaaaaagttcaatatcaattactgaacca Alignment from Exonerate_protein2genome GCAGCCTCAGGGTGGGGCCGGGGATGCGACATCCTCATCTTCTACAGCCCAGATGCGGAGGAATGGTGTCAGTACCTACAGGATCTTTTCGTGTCCTGCCGGCAGGTTCGTAGCCAGAAGACGCAGACATACCGGCTGGTCCCGGATGCCTCTTTCTCTGCCCAGGACCTGTGGGTCTTCAGGGATGCGCGATGCGTGCTGGTGCTACTGTCGGCGGGGCTGGTAGGATGCTTCGGCCAGCCAGGACTGCTGCCAATGCTGCAGCGTGCCTGCCATCCGCCGCAGCGTGTGGTGCGGCTGTTGTGTGGAGTGCAGCCAGGCGACGAGGACTTCCAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAAATGACTTGTGATGATGAGCCAGAGACCTACCTGGCGGCTGTGAGGAAGGCCATTTCTGAAG ttggataatccaatgtaggtaagctcatacaagggctttcTCATCTTTAGGGTGGGGCCGGGGATGTGACATCCTCATCTTCTACAGCCCAGATGCCGAAGAATGGTGTCAATACCTACAGGATCTTTTTGTTTCCTGCCGGCAGGTGCGTAGTCAGAAGATACAGACATATGAA------CCTGATGCCTCTTTCCCTGCCCAGGACTTGTGGGTCTGTAGGGACACACAATGTGTGCTGGTGCTTCTATCAGTAGGGCATGTAGGATGTTTCAGCCAGGCAGAGTTGCTCACAATGCGACAGTGTGCTTGTCATCCACCTCAGCGTGTGGTGCGGCTACTATGTGGCATATTGTCAGGA---GAGGACTTACAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAGATGGCTTGTGATGATGAACCAGAAACATATCTGGCACCGGTGAGAAAGGCTATTTCTGAAGgtaacgactacagcactgcagtaaaaagttcaatatcaattactgaacca Alignment from Exonerate_coding2genome GCAGCCTCAGGGTGGGGCCGGGGATGCGACATCCTCATCTTCTACAGCCCAGATGCGGAGGAATGGTGTCAGTACCTACAGGATCTTTTCGTGTCCTGCCGGCAGGTTCGTAGCCAGAAGACGCAGACATACCGGCTGGTCCCGGATGCCTCTTTCTCTGCCCAGGACCTGTGGGTCTTCAGGGATGCGCGATGCGTGCTGGTGCTACTGTCGGCGGGGCTGGTAGGATGCTTCGGCCAGCCAGGACTGCTGCCAATGCTGCAGCGTGCCTGCCATCCGCCGCAGCGTGTGGTGCGGCTGTTGTGTGGAGTGCAGCCAGGCGACGAGGACTTCCAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAAATGACTTGTGATGATGAGCCAGAGACCTACCTGGCGGCTGTGAGGAAGGCCATTTCTGAAG ttggataatccaatgtaggtaagctcatacaagggctttcTCATCTTTAGGGTGGGGCCGGGGATGTGACATCCTCATCTTCTACAGCCCAGATGCCGAAGAATGGTGTCAATACCTACAGGATCTTTTTGTTTCCTGCCGGCAGGTGCGTAGTCAGAAGATACAGACATATGAA------CCTGATGCCTCTTTCCCTGCCCAGGACTTGTGGGTCTGTAGGGACACACAATGTGTGCTGGTGCTTCTATCAGTAGGGCATGTAGGATGTTTCAGCCAGGCAGAGTTGCTCACAATGCGACAGTGTGCTTGTCATCCACCTCAGCGTGTGGTGCGGCTACTATGTGGCATATTGTCAGGA---GAGGACTTACAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAGATGGCTTGTGATGATGAACCAGAAACATATCTGGCACCGGTGAGAAAGGCTATTTCTGAAGgtaacgactacagcactgcagtaaaaagttcaatatcaattactgaacca Alignment from GeneWise GCAGCCTCAGGGTGGGGCCGGGGATGCGACATCCTCATCTTCTACAGCCCAGATGCGGAGGAATGGTGTCAGTACCTACAGGATCTTTTCGTGTCCTGCCGGCAGGTTCGTAGCCAGAAGACGCAGACATACCGGCTGGTCCCGGATGCCTCTTTCTCTGCCCAGGACCTGTGGGTCTTCAGGGATGCGCGATGCGTGCTGGTGCTACTGTCGGCGGGGCTGGTAGGATGCTTCGGCCAGCCAGGACTGCTGCCAATGCTGCAGCGTGCCTGCCATCCGCCGCAGCGTGTGGTGCGGCTGTTGTGTGGAGTGCAGCCAGGCGACGAGGACTTCCAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAAATGACTTGTGATGATGAGCCAGAGACCTACCTGGCGGCTGTGAGGAAGGCCATTTCTGAAG ttggataatccaatgtaggtaagctcatacaagggctttcTCATCTTTAGGGTGGGGCCGGGGATGTGACATCCTCATCTTCTACAGCCCAGATGCCGAAGAATGGTGTCAATACCTACAGGATCTTTTTGTTTCCTGCCGGCAGGTGCGTAGTCAGAAGATACAGACATATGAA------CCTGATGCCTCTTTCCCTGCCCAGGACTTGTGGGTCTGTAGGGACACACAATGTGTGCTGGTGCTTCTATCAGTAGGGCATGTAGGATGTTTCAGCCAGGCAGAGTTGCTCACAATGCGACAGTGTGCTTGTCATCCACCTCAGCGTGTGGTGCGGCTACTATGTGGCATATTGTCAGGA---GAGGACTTACAGGCCTTCTTTCCTGACTGGGCCCACTGGCAGGAGATGGCTTGTGATGATGAACCAGAAACATATCTGGCACCGGTGAGAAAGGCTATTTCTGAAGgtaacgactacagcactgcagtaaaaagttcaatatcaattactgaacca #### Pitpnm1_ID307_4 --> 2 - 1 Original Alignment atACCATCGACATCGTGCGGGATGCAGTGGCCCCAGGAGAATACAAAGCGGAAGAGGACCCTCGGCTGTACCGCTCAGCCAAGACAGGCCGAGGGCCGCTGGCTGATGACTGGGCACGGACAGCGGCCCAGACAGGACCTCTCATGTGTGCCTATAAGCTGTGCAAGGTTGAATTCCGCTACTGGGGCATGCAGGCCAAGATTGAGCAGTTCATCCATGACGTAg cctttggtcctgtccatgataccctacagtacactttctacttccccaagatACAATTGACATTGTACAGGATGCAGTTGCTTCAGGGGAATGCAAAGCGGAGGAGGACCCTCGGTTGTACCGCTCGGCCAAGACAGGCCGAGGGCCAGTGGCAGATGACTGGGCACGTACGGCAGCACAGACAGGGCCTCTCATGTGTGCATATAAGTTGTGCAAGGTTGAGTTTCGCTACTGGGGTATGCAGGCCAAGATTGAGCAGTTCATCCATGATGTTggtgagtcaaggcaacggaggaagtgatatgacgctgcatagttgcatttg Alignment from CESAR atACCATCGACATCGTGCGGGATGCAGTGGCCCCAGGAGAATACAAAGCGGAAGAGGACCCTCGGCTGTACCGCTCAGCCAAGACAGGCCGAGGGCCGCTGGCTGATGACTGGGCACGGACAGCGGCCCAGACAGGACCTCTCATGTGTGCCTATAAGCTGTGCAAGGTTGAATTCCGCTACTGGGGCATGCAGGCCAAGATTGAGCAGTTCATCCATGACGTAg cctttggtcctgtccatgataccctacagtacactttctacttccccaagatACAATTGACATTGTACAGGATGCAGTTGCTTCAGGGGAATGCAAAGCGGAGGAGGACCCTCGGTTGTACCGCTCGGCCAAGACAGGCCGAGGGCCAGTGGCAGATGACTGGGCACGTACGGCAGCACAGACAGGGCCTCTCATGTGTGCATATAAGTTGTGCAAGGTTGAGTTTCGCTACTGGGGTATGCAGGCCAAGATTGAGCAGTTCATCCATGATGTTggtgagtcaaggcaacggaggaagtgatatgacgctgcatagttgcatttg Alignment from Spaln_aa2Genome ATACCATCGACATCGTGCGGGATGCAGTGGCCCCAGGAGAATACAAAGCGGAAGAGGACCCTCGGCTGTACCGCTCAGCCAAGACAGGCCGAGGGCCGCTGGCTGATGACTGGGCACGGACAGCGGCCCAGACAGGACCTCTCATGTGTGCCTATAAGCTGTGCAAGGTTGAATTCCGCTACTGGGGCATGCAGGCCAAGATTGAGCAGTTCATCCATGACGTAG cctttggtcctgtccatgataccctacagtacactttctacttccccaagATACAATTGACATTGTACAGGATGCAGTTGCTTCAGGGGAATGCAAAGCGGAGGAGGACCCTCGGTTGTACCGCTCGGCCAAGACAGGCCGAGGGCCAGTGGCAGATGACTGGGCACGTACGGCAGCACAGACAGGGCCTCTCATGTGTGCATATAAGTTGTGCAAGGTTGAGTTTCGCTACTGGGGTATGCAGGCCAAGATTGAGCAGTTCATCCATGATGTTGgtgagtcaaggcaacggaggaagtgatatgacgctgcatagttgcatttg Alignment from Spaln_nt2Genome ATACCATCGACATCGTGCGGGATGCAGTGGCCCCAGGAGAATACAAAGCGGAAGAGGACCCTCGGCTGTACCGCTCAGCCAAGACAGGCCGAGGGCCGCTGGCTGATGACTGGGCACGGACAGCGGCCCAGACAGGACCTCTCATGTGTGCCTATAAGCTGTGCAAGGTTGAATTCCGCTACTGGGGCATGCAGGCCAAGATTGAGCAGTTCATCCATGACGTAG cctttggtcctgtccatgataccctacagtacactttctacttccccaagATACAATTGACATTGTACAGGATGCAGTTGCTTCAGGGGAATGCAAAGCGGAGGAGGACCCTCGGTTGTACCGCTCGGCCAAGACAGGCCGAGGGCCAGTGGCAGATGACTGGGCACGTACGGCAGCACAGACAGGGCCTCTCATGTGTGCATATAAGTTGTGCAAGGTTGAGTTTCGCTACTGGGGTATGCAGGCCAAGATTGAGCAGTTCATCCATGATGTTGgtgagtcaaggcaacggaggaagtgatatgacgctgcatagttgcatttg Alignment from Pairagon ATACCATCGACATCGTGCGGGATGCAGTGGCCCCAGGAGAATACAAAGCGGAAGAGGACCCTCGGCTGTACCGCTCAGCCAAGACAGGCCGAGGGCCGCTGGCTGATGACTGGGCACGGACAGCGGCCCAGACAGGACCTCTCATGTGTGCCTATAAGCTGTGCAAGGTTGAATTCCGCTACTGGGGCATGCAGGCCAAGATTGAGCAGTTCATCCATGACGTAG cctttggtcctgtccatgataccctacagtacactttctacttccccaagATACAATTGACATTGTACAGGATGCAGTTGCTTCAGGGGAATGCAAAGCGGAGGAGGACCCTCGGTTGTACCGCTCGGCCAAGACAGGCCGAGGGCCAGTGGCAGATGACTGGGCACGTACGGCAGCACAGACAGGGCCTCTCATGTGTGCATATAAGTTGTGCAAGGTTGAGTTTCGCTACTGGGGTATGCAGGCCAAGATTGAGCAGTTCATCCATGATGTTGgtgagtcaaggcaacggaggaagtgatatgacgctgcatagttgcatttg Alignment from Exonerate_protein2genome ATACCATCGACATCGTGCGGGATGCAGTGGCCCCAGGAGAATACAAAGCGGAAGAGGACCCTCGGCTGTACCGCTCAGCCAAGACAGGCCGAGGGCCGCTGGCTGATGACTGGGCACGGACAGCGGCCCAGACAGGACCTCTCATGTGTGCCTATAAGCTGTGCAAGGTTGAATTCCGCTACTGGGGCATGCAGGCCAAGATTGAGCAGTTCATCCATGACGTAG cctttggtcctgtccatgataccctacagtacactttctacttccccaagATACAATTGACATTGTACAGGATGCAGTTGCTTCAGGGGAATGCAAAGCGGAGGAGGACCCTCGGTTGTACCGCTCGGCCAAGACAGGCCGAGGGCCAGTGGCAGATGACTGGGCACGTACGGCAGCACAGACAGGGCCTCTCATGTGTGCATATAAGTTGTGCAAGGTTGAGTTTCGCTACTGGGGTATGCAGGCCAAGATTGAGCAGTTCATCCATGATGTTGgtgagtcaaggcaacggaggaagtgatatgacgctgcatagttgcatttg Alignment from Exonerate_coding2genome ATACCATCGACATCGTGCGGGATGCAGTGGCCCCAGGAGAATACAAAGCGGAAGAGGACCCTCGGCTGTACCGCTCAGCCAAGACAGGCCGAGGGCCGCTGGCTGATGACTGGGCACGGACAGCGGCCCAGACAGGACCTCTCATGTGTGCCTATAAGCTGTGCAAGGTTGAATTCCGCTACTGGGGCATGCAGGCCAAGATTGAGCAGTTCATCCATGACGTAG cctttggtcctgtccatgataccctacagtacactttctacttccccaagATACAATTGACATTGTACAGGATGCAGTTGCTTCAGGGGAATGCAAAGCGGAGGAGGACCCTCGGTTGTACCGCTCGGCCAAGACAGGCCGAGGGCCAGTGGCAGATGACTGGGCACGTACGGCAGCACAGACAGGGCCTCTCATGTGTGCATATAAGTTGTGCAAGGTTGAGTTTCGCTACTGGGGTATGCAGGCCAAGATTGAGCAGTTCATCCATGATGTTGgtgagtcaaggcaacggaggaagtgatatgacgctgcatagttgcatttg Alignment from GeneWise ATACCATCGACATCGTGCGGGATGCAGTGGCCCCAGGAGAATACAAAGCGGAAGAGGACCCTCGGCTGTACCGCTCAGCCAAGACAGGCCGAGGGCCGCTGGCTGATGACTGGGCACGGACAGCGGCCCAGACAGGACCTCTCATGTGTGCCTATAAGCTGTGCAAGGTTGAATTCCGCTACTGGGGCATGCAGGCCAAGATTGAGCAGTTCATCCATGACGTAG cctttggtcctgtccatgataccctacagtacactttctacttccccaagATACAATTGACATTGTACAGGATGCAGTTGCTTCAGGGGAATGCAAAGCGGAGGAGGACCCTCGGTTGTACCGCTCGGCCAAGACAGGCCGAGGGCCAGTGGCAGATGACTGGGCACGTACGGCAGCACAGACAGGGCCTCTCATGTGTGCATATAAGTTGTGCAAGGTTGAGTTTCGCTACTGGGGTATGCAGGCCAAGATTGAGCAGTTCATCCATGATGTTGgtgagtcaaggcaacggaggaagtgatatgacgctgcatagttgcatttg #### Pitpnm1_ID308_5 --> 2 - 1 Original Alignment gtCTGCGCAGGGTGATGCTTCGCGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAACTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTCAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCCTGATGGACCTGAGGCCCCTCCCGGCCCCGACGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAg ggcattgcagtgggaactggatgtaaaagggctcatctctccacccacaggcCTACACAGGGTAATGCTCCGTGCCCATCGTCAGGCCTGGTGTTGGCAGGAAGAGTGGATAGAGCTGAGCATGGCGGGTATACGGGCATTGGAGGAGGAACCCGCACGTATGCTAGCTCAGTGTATGGCTAAATGTAACACTGGCAGCGAGGGACCAGAAGCTAAGACTCCTGGAAAATCTAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCTTCTATGGACCTGAGGCTCGCCCTGGCCCTGATGCCTCCCCAGAC---AGTTTTGGCAAGCAGTGGTCCTCTTCTTCCCGATCTTCGCATTCGTCACAACATGGGggtaagcattaactgagtcacaatatgggggtgagcatctttttaacattg Alignment from CESAR gtCTGCGCAGGGTGATGCTTCGCGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAACTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTCAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCCTGATGGACCTGAGGCCCCTCCCGGCCCCGACGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAg ggcattgcagtgggaactggatgtaaaagggctcatctctccacccacaggcCTACACAGGGTAATGCTCCGTGCCCATCGTCAGGCCTGGTGTTGGCAGGAAGAGTGGATAGAGCTGAGCATGGCGGGTATACGGGCATTGGAGGAGGAACCCGCACGTATGCTAGCTCAGTGTATGGCTAAATGTAACACTGGCAGCGAGGGACCAGAAGCTAAGACTCCTGGAAAATCTAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCTTCTATGGACCTGAGGCTCGCCCTGGCCCTGATGCCTCCCCAGAC---AGTTTTGGCAAGCAGTGGTCCTCTTCTTCCCGATCTTCGCATTCGTCACAACATGGGggtaagcattaactgagtcacaatatgggggtgagcatctttttaacatct Alignment from Spaln_aa2Genome GTCTGCGCAGGGTGATGCTTCGCGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAACTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTCAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCCTGATGGACCTGAGGCCCCTCCCGGCCCCGACGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAG ggcattgcagtgggaactggatgtaaaagggctcatctctccacccacagGCCTACACAGGGTAATGCTCCGTGCCCATCGTCAGGCCTGGTGTTGGCAGGAAGAGTGGATAGAGCTGAGCATGGCGGGTATACGGGCATTGGAGGAGGAACCCGCACGTATGCTAGCTCAGTGTATGGCTAAATGTAACACTGGCAGCGAGGGACCAGAAGCTAAGACTCCTGGAAAATCTAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCTTCTATGGACCTGAGGCTCGCCCTGGCCCTGATGCCTCCCCAGAC---AGTTTTGGCAAGCAGTGGTCCTCTTCTTCCCGATCTTCGCATTCGTCACAACATGGGGgtaagcattaactgagtcacaatatgggggtgagcatctttttaacattg Alignment from Spaln_nt2Genome GTCTGCGCAGGGTGATGCTTCGCGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAACTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTCAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCCTGATGGACCTGAGGCCCCTCCCGGCCCCGACGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAG ggcattgcagtgggaactggatgtaaaagggctcatctctccacccacagGCCTACACAGGGTAATGCTCCGTGCCCATCGTCAGGCCTGGTGTTGGCAGGAAGAGTGGATAGAGCTGAGCATGGCGGGTATACGGGCATTGGAGGAGGAACCCGCACGTATGCTAGCTCAGTGTATGGCTAAATGTAACACTGGCAGCGAGGGACCAGAAGCTAAGACTCCTGGAAAATCTAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCTTCTATGGACCTGAGGCTCGCCCTGGCCCTGATGCCTCCCCAGA---CAGTTTTGGCAAGCAGTGGTCCTCTTCTTCCCGATCTTCGCATTCGTCACAACATGGGGgtaagcattaactgagtcacaatatgggggtgagcatctttttaacattg Alignment from Pairagon GTCTGCGCAGGGTGATGCTTCGCGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAACTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTCAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCCTGATGGACCTGAGGCCCCTCCCGGCCCCGACGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAG ggcattgcagtgggaactggatgtaaaagggctcatctctccacccacagGCCTACACAGGGTAATGCTCCGTGCCCATCGTCAGGCCTGGTGTTGGCAGGAAGAGTGGATAGAGCTGAGCATGGCGGGTATACGGGCATTGGAGGAGGAACCCGCACGTATGCTAGCTCAGTGTATGGCTAAATGTAACACTGGCAGCGAGGGACCAGAAGCTAAGACTCCTGGAAAATCTAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCTTCTATGGACCTGAGGCTCGCCCTGGCCCTGATGCCTCCCCAGA---CAGTTTTGGCAAGCAGTGGTCCTCTTCTTCCCGATCTTCGCATTCGTCACAACATGGGGgtaagcattaactgagtcacaatatgggggtgagcatctttttaacattg Alignment from Exonerate_protein2genome GTCTGCGCAGGGTGATGCTTCGCGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAACTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTCAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCCTGATGGACCTGAGGCCCCTCCCGGCCCCGACGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAG ggcattgcagtgggaactggatgtaaaagggctcatctctccacccacagGCCTACACAGGGTAATGCTCCGTGCCCATCGTCAGGCCTGGTGTTGGCAGGAAGAGTGGATAGAGCTGAGCATGGCGGGTATACGGGCATTGGAGGAGGAACCCGCACGTATGCTAGCTCAGTGTATGGCTAAATGTAACACTGGCAGCGAGGGACCAGAAGCTAAGACTCCTGGAAAATCTAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCTTCTATGGACCTGAGGCTCGCCCTGGCCCTGATGCCTCCCCAGAC---AGTTTTGGCAAGCAGTGGTCCTCTTCTTCCCGATCTTCGCATTCGTCACAACATGGGGgtaagcattaactgagtcacaatatgggggtgagcatctttttaacattg Alignment from Exonerate_coding2genome GTCTGCGCAGGGTGATGCTTCGCGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAACTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTCAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCCTGATGGACCTGAGGCCCCTCCCGGCCCCGACGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAG ggcattgcagtgggaactggatgtaaaagggctcatctctccacccacagGCCTACACAGGGTAATGCTCCGTGCCCATCGTCAGGCCTGGTGTTGGCAGGAAGAGTGGATAGAGCTGAGCATGGCGGGTATACGGGCATTGGAGGAGGAACCCGCACGTATGCTAGCTCAGTGTATGGCTAAATGTAACACTGGCAGCGAGGGACCAGAAGCTAAGACTCCTGGAAAATCTAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCTTCTATGGACCTGAGGCTCGCCCTGGCCCTGATGCCTCCCCAGAC---AGTTTTGGCAAGCAGTGGTCCTCTTCTTCCCGATCTTCGCATTCGTCACAACATGGGGgtaagcattaactgagtcacaatatgggggtgagcatctttttaacattg Alignment from GeneWise GTCTGCGCAGGGTGATGCTTCGCGCCCATCGCCAGGCCTGGTGTTGGCAAGATGAGTGGATAGAACTGAGCATGGCTGACATCCGGGCACTGGAGGAGGAGACTGCACGCATGCTAGCGCAGCGTATGGCTAAGTGCAACACTGGCAGTGAGGGACCAGAGGCTCAGACCCCTGGGAAATCCAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCCCTGATGGACCTGAGGCCCCTCCCGGCCCCGACGCCTCCCCAGATGCCAGCTTTGGGAAGCAGTGGTCCTCATCCTCCCGTTCCTCCTACTCATCCCAACATGGAG ggcattgcagtgggaactggatgtaaaagggctcatctctccacccacagGCCTACACAGGGTAATGCTCCGTGCCCATCGTCAGGCCTGGTGTTGGCAGGAAGAGTGGATAGAGCTGAGCATGGCGGGTATACGGGCATTGGAGGAGGAACCCGCACGTATGCTAGCTCAGTGTATGGCTAAATGTAACACTGGCAGCGAGGGACCAGAAGCTAAGACTCCTGGAAAATCTAGCACTGAGGCCCGACCTGGGACCAGCACTGCTGGCACCTTCTATGGACCTGAGGCTCGCCCTGGCCCTGATGCCTCCCCAGAC---AGTTTTGGCAAGCAGTGGTCCTCTTCTTCCCGATCTTCGCATTCGTCACAACATGGGGgtaagcattaactgagtcacaatatgggggtgagcatctttttaacattg #### Pitpnm1_ID310_7 --> 2 - 1 Original Alignment aaGGTTTCTCGGACAGTGATGAGGTCTTCCCCAAGGAGATGACCAAGTGGAATTCCAATGATTTTATCGATGCCTTTGCCTCCCCAACCGAGGTGGAGGGGGTACCAg gatgggtgacattaattcatctcaaaattgtctttctaaacttttccaagatGGGTTCTCAGATAGTGATGTAGTGTTCCCCAAGGAGATGTCCAAGTGGAATTCCAATGATTTTCTTGAAACATTTGCCCCCCCAACTGAGGTAGAAGGCATACCTggtatgtcctttagctagatctctgattccagatgcaaatatgcagcactt Alignment from CESAR aaGGTTTCTCGGACAGTGATGAGGTCTTCCCCAAGGAGATGACCAAGTGGAATTCCAATGATTTTATCGATGCCTTTGCCTCCCCAACCGAGGTGGAGGGGGTACCAg gatgggtgacattaattcatctcaaaattgtctttctaaacttttccaagatGGGTTCTCAGATAGTGATGTAGTGTTCCCCAAGGAGATGTCCAAGTGGAATTCCAATGATTTTCTTGAAACATTTGCCCCCCCAACTGAGGTAGAAGGCATACCTggtatgtcctttagctagatctctgattccagatgcaaatatgcagcactt Alignment from Spaln_aa2Genome AAGGTTTCTCGGACAGTGATGAGGTCTTCCCCAAGGAGATGACCAAGTGGAATTCCAATGATTTTATCGATGCCTTTGCCTCCCCAACCGAGGTGGAGGGGGTACCAG gatgggtgacattaattcatctcaaaattgtctttctaaacttttccaagATGGGTTCTCAGATAGTGATGTAGTGTTCCCCAAGGAGATGTCCAAGTGGAATTCCAATGATTTTCTTGAAACATTTGCCCCCCCAACTGAGGTAGAAGGCATACCTGgtatgtcctttagctagatctctgattccagatgcaaatatgcagcactt Alignment from Spaln_nt2Genome AAGGTTTCTCGGACAGTGATGAGGTCTTCCCCAAGGAGATGACCAAGTGGAATTCCAATGATTTTATCGATGCCTTTGCCTCCCCAACCGAGGTGGAGGGGGTACCAG gatgggtgacattaattcatctcaaaattgtctttctaaacttttccaagATGGGTTCTCAGATAGTGATGTAGTGTTCCCCAAGGAGATGTCCAAGTGGAATTCCAATGATTTTCTTGAAACATTTGCCCCCCCAACTGAGGTAGAAGGCATACCTGgtatgtcctttagctagatctctgattccagatgcaaatatgcagcactt Alignment from Pairagon AAGGTTTCTCGGACAGTGATGAGGTCTTCCCCAAGGAGATGACCAAGTGGAATTCCAATGATTTTATCGATGCCTTTGCCTCCCCAACCGAGGTGGAGGGGGTACCAG gatgggtgacattaattcatctcaaaattgtctttctaaacttttccaagATGGGTTCTCAGATAGTGATGTAGTGTTCCCCAAGGAGATGTCCAAGTGGAATTCCAATGATTTTCTTGAAACATTTGCCCCCCCAACTGAGGTAGAAGGCATACCTGgtatgtcctttagctagatctctgattccagatgcaaatatgcagcactt Alignment from Exonerate_protein2genome AAGGTTTCTCGGACAGTGATGAGGTCTTCCCCAAGGAGATGACCAAGTGGAATTCCAATGATTTTATCGATGCCTTTGCCTCCCCAACCGAGGTGGAGGGGGTACCAG gatgggtgacattaattcatctcaaaattgtctttctaaacttttccaagATGGGTTCTCAGATAGTGATGTAGTGTTCCCCAAGGAGATGTCCAAGTGGAATTCCAATGATTTTCTTGAAACATTTGCCCCCCCAACTGAGGTAGAAGGCATACCTGgtatgtcctttagctagatctctgattccagatgcaaatatgcagcactt Alignment from Exonerate_coding2genome AAGGTTTCTCGGACAGTGATGAGGTCTTCCCCAAGGAGATGACCAAGTGGAATTCCAATGATTTTATCGATGCCTTTGCCTCCCCAACCGAGGTGGAGGGGGTACCAG gatgggtgacattaattcatctcaaaattgtctttctaaacttttccaagATGGGTTCTCAGATAGTGATGTAGTGTTCCCCAAGGAGATGTCCAAGTGGAATTCCAATGATTTTCTTGAAACATTTGCCCCCCCAACTGAGGTAGAAGGCATACCTGgtatgtcctttagctagatctctgattccagatgcaaatatgcagcactt Alignment from GeneWise AAGGTTTCTCGGACAGTGATGAGGTCTTCCCCAAGGAGATGACCAAGTGGAATTCCAATGATTTTATCGATGCCTTTGCCTCCCCAACCGAGGTGGAGGGGGTACCAG gatgggtgacattaattcatctcaaaattgtctttctaaacttttccaagATGGGTTCTCAGATAGTGATGTAGTGTTCCCCAAGGAGATGTCCAAGTGGAATTCCAATGATTTTCTTGAAACATTTGCCCCCCCAACTGAGGTAGAAGGCATACCTGgtatgtcctttagctagatctctgattccagatgcaaatatgcagcactt #### Pitpnm1_ID320_17 --> 0 - 0 Original Alignment GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG ccattgtagtatgggtgtatcttgtatgaagctttttgggttctttgcagATTATGGAGAAAGAATGGCCACAATTAACTGAGTGTCAAGAACCATCCATCTACAGCCCTGCCTTCCCTAAGGAAAAGTGGCAGTGCAAGCAAACACAGGTCAAGATTCGGgtaatgatcctagtttgtttctcccttggctgtttacagttgtttgaaac Alignment from CESAR GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG ccattgtagtatgggtgtatcttgtatgaagctttttgggttctttgcagATTATGGAGAAAGAATGGCCACAATTAACTGAGTGTCAAGAACCATCCATCTACAGCCCTGCCTTCCCTAAGGAAAAGTGGCAGTGCAAGCAAACACAGGTCAAGATTCGGgtaatgatcctagtttgtttctcccttggctgtttacagttgtttgaaac Alignment from Spaln_aa2Genome GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG ccattgtagtatgggtgtatcttgtatgaagctttttgggttctttgcagATTATGGAGAAAGAATGGCCACAATTAACTGAGTGTCAAGAACCATCCATCTACAGCCCTGCCTTCCCTAAGGAAAAGTGGCAGTGCAAGCAAACACAGGTCAAGATTCGGgtaatgatcctagtttgtttctcccttggctgtttacagttgtttgaaac Alignment from Spaln_nt2Genome GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG ccattgtagtatgggtgtatcttgtatgaagctttttgggttctttgcagATTATGGAGAAAGAATGGCCACAATTAACTGAGTGTCAAGAACCATCCATCTACAGCCCTGCCTTCCCTAAGGAAAAGTGGCAGTGCAAGCAAACACAGGTCAAGATTCGGgtaatgatcctagtttgtttctcccttggctgtttacagttgtttgaaac Alignment from Pairagon GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG ccattgtagtatgggtgtatcttgtatgaagctttttgggttctttgcagATTATGGAGAAAGAATGGCCACAATTAACTGAGTGTCAAGAACCATCCATCTACAGCCCTGCCTTCCCTAAGGAAAAGTGGCAGTGCAAGCAAACACAGGTCAAGATTCGGgtaatgatcctagtttgtttctcccttggctgtttacagttgtttgaaac Alignment from Exonerate_protein2genome GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG ccattgtagtatgggtgtatcttgtatgaagctttttgggttctttgcagATTATGGAGAAAGAATGGCCACAATTAACTGAGTGTCAAGAACCATCCATCTACAGCCCTGCCTTCCCTAAGGAAAAGTGGCAGTGCAAGCAAACACAGGTCAAGATTCGGgtaatgatcctagtttgtttctcccttggctgtttacagttgtttgaaac Alignment from Exonerate_coding2genome GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG ccattgtagtatgggtgtatcttgtatgaagctttttgggttctttgcagATTATGGAGAAAGAATGGCCACAATTAACTGAGTGTCAAGAACCATCCATCTACAGCCCTGCCTTCCCTAAGGAAAAGTGGCAGTGCAAGCAAACACAGGTCAAGATTCGGgtaatgatcctagtttgtttctcccttggctgtttacagttgtttgaaac Alignment from GeneWise GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG ccattgtagtatgggtgtatcttgtatgaagctttttgggttctttgcagATTATGGAGAAAGAATGGCCACAATTAACTGAGTGTCAAGAACCATCCATCTACAGCCCTGCCTTCCCTAAGGAAAAGTGGCAGTGCAAGCAAACACAGGTCAAGATTCGGgtaatgatcctagtttgtttctcccttggctgtttacagttgtttgaaac #### Pitpnm1_ID324_21 --> 1 - 0 Original Alignment gCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG cgggaaatagatttcctcagggtgcagagtctgtttgctttccacgataggCACTGGCAGGATTCTGACTACTTGATTGTATATGCAACTGGTCGACCTGATATGCAAAAACACCGTGTTGTAGCTTGGTTGTCACAACATACTTTCCCTCATGGAGTTGATTCTTTCTGCGACATCCTTATGCACGACCCACTGCAGCAGAAAGCCATGTTTTCACAGAGCCCTGTCCAGGAGgtgagatacttggtaaggaccagtcctgactgggtctaatccaagttcaa Alignment from CESAR gCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG cgggaaatagatttcctcagggtgcagagtctgtttgctttccacgataggCACTGGCAGGATTCTGACTACTTGATTGTATATGCAACTGGTCGACCTGATATGCAAAAACACCGTGTTGTAGCTTGGTTGTCACAACATACTTTCCCTCATGGAGTTGATTCTTTCTGCGACATCCTTATGCACGACCCACTGCAGCAGAAAGCCATGTTTTCACAGAGCCCTGTCCAGGAGgtgagatacttggtaaggaccagtcctgactgggtctaatccaagttcaa Alignment from Spaln_aa2Genome GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG cgggaaatagatttcctcagggtgcagagtctgtttgctttccacgatagGCACTGGCAGGATTCTGACTACTTGATTGTATATGCAACTGGTCGACCTGATATGCAAAAACACCGTGTTGTAGCTTGGTTGTCACAACATACTTTCCCTCATGGAGTTGATTCTTTCTGCGACATCCTTATGCACGACCCACTGCAGCAGAAAGCCATGTTTTCACAGAGCCCTGTCCAGGAGgtgagatacttggtaaggaccagtcctgactgggtctaatccaagttcaa Alignment from Spaln_nt2Genome GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG cgggaaatagatttcctcagggtgcagagtctgtttgctttccacgatagGCACTGGCAGGATTCTGACTACTTGATTGTATATGCAACTGGTCGACCTGATATGCAAAAACACCGTGTTGTAGCTTGGTTGTCACAACATACTTTCCCTCATGGAGTTGATTCTTTCTGCGACATCCTTATGCACGACCCACTGCAGCAGAAAGCCATGTTTTCACAGAGCCCTGTCCAGGAGgtgagatacttggtaaggaccagtcctgactgggtctaatccaagttcaa Alignment from Pairagon GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG cgggaaatagatttcctcagggtgcagagtctgtttgctttccacgatagGCACTGGCAGGATTCTGACTACTTGATTGTATATGCAACTGGTCGACCTGATATGCAAAAACACCGTGTTGTAGCTTGGTTGTCACAACATACTTTCCCTCATGGAGTTGATTCTTTCTGCGACATCCTTATGCACGACCCACTGCAGCAGAAAGCCATGTTTTCACAGAGCCCTGTCCAGGAGgtgagatacttggtaaggaccagtcctgactgggtctaatccaagttcaa Alignment from Exonerate_protein2genome cgggaaatagatttcctcagggtgcagagtctgtttgctttccacgataggcactggcaggattctgactacttgattgtatatgcaactggtcgacctgatatgcaaaaacaccgtgttgtagcttggttgtcacaacatactttccctcatggagttgattctttctgcgacatccttatgcacgacccactgcagcagaaagccatgttttcacagagccctgtccaggaggtgagatacttggtaaggaccagtcctgactgggtctaatccaagttcaa Alignment from Exonerate_coding2genome cgggaaatagatttcctcagggtgcagagtctgtttgctttccacgataggcactggcaggattctgactacttgattgtatatgcaactggtcgacctgatatgcaaaaacaccgtgttgtagcttggttgtcacaacatactttccctcatggagttgattctttctgcgacatccttatgcacgacccactgcagcagaaagccatgttttcacagagccctgtccaggaggtgagatacttggtaaggaccagtcctgactgggtctaatccaagttcaa Alignment from GeneWise GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG cgggaaatagatttcctcagggtgcagagtctgtttgctttccacgatagGCACTGGCAGGATTCTGACTACTTGATTGTATATGCAACTGGTCGACCTGATATGCAAAAACACCGTGTTGTAGCTTGGTTGTCACAACATACTTTCCCTCATGGAGTTGATTCTTTCTGCGACATCCTTATGCACGACCCACTGCAGCAGAAAGCCATGTTTTCACAGAGCCCTGTCCAGGAGgtgagatacttggtaaggaccagtcctgactgggtctaatccaagttcaa #### Pkd2l1_ID8964_4 --> 0 - 2 Original Alignment TTTGCTCAGGGCCCACTCCTGGACAGTTTGTACTGGACAAAGTGGTACAACAACCAGAGCCTGGGGCGTGGCTCCCACTCCTTCATCTACTATGAGAACCTGCTCCTGGGAGCCCCAAGGTTGCGGCAGCTGCGCGTGCGCAATGACTCCTGTGTGGTTCATGAAGACTTCCGGGAGGACATTTTGAACTGTTATGATGTGTACTCGCCGGACAAAGAAGATCAGCTCCCCTTTGGACCTCAGAACGGCACAgc caagcatgcaatgattccaaagggattgaaccactgtctttgtttcctagTTTGCTCAGGGTCCACTTCTGGACGGATTGTATTGGACAAAGTGGTACAACAATCAAAGCCTAGGGCATGGGTCCCATTCATTCATCTACTATGAGAACCGGCTTCTGGGGGCACCG---TTGCGACAATTGCATGTACGAAATGACACCTGTGTGGTCCATGAGGACTTTCGGGAAGACATTCTTAACTGTTATGATGTGTATTTACCAGACAAAGAAGATTACTTCCCCTTTGGACCTCAGATTGGTACAgtgtgagtggcttacctaggaattctcaaggaccactgctagccatggttgt Alignment from CESAR TTTGCTCAGGGCCCACTCCTGGACAGTTTGTACTGGACAAAGTGGTACAACAACCAGAGCCTGGGGCGTGGCTCCCACTCCTTCATCTACTATGAGAACCTGCTCCTGGGAGCCCCAAGGTTGCGGCAGCTGCGCGTGCGCAATGACTCCTGTGTGGTTCATGAAGACTTCCGGGAGGACATTTTGAACTGTTATGATGTGTACTCGCCGGACAAAGAAGATCAGCTCCCCTTTGGACCTCAGAACGGCACAgc caagcatgcaatgattccaaagggattgaaccactgtctttgtttcctagTTTGCTCAGGGTCCACTTCTGGACGGATTGTATTGGACAAAGTGGTACAACAATCAAAGCCTAGGGCATGGGTCCCATTCATTCATCTACTATGAGAACCGGCTTCTGGGGGCACCG---TTGCGACAATTGCATGTACGAAATGACACCTGTGTGGTCCATGAGGACTTTCGGGAAGACATTCTTAACTGTTATGATGTGTATTTACCAGACAAAGAAGATTACTTCCCCTTTGGACCTCAGATTGGTACAgtgtgagtggcttacctaggaattctcaaggaccactgctagccatggttgt Alignment from Spaln_aa2Genome TTTGCTCAGGGCCCACTCCTGGACAGTTTGTACTGGACAAAGTGGTACAACAACCAGAGCCTGGGGCGTGGCTCCCACTCCTTCATCTACTATGAGAACCTGCTCCTGGGAGCCCCAAGGTTGCGGCAGCTGCGCGTGCGCAATGACTCCTGTGTGGTTCATGAAGACTTCCGGGAGGACATTTTGAACTGTTATGATGTGTACTCGCCGGACAAAGAAGATCAGCTCCCCTTTGGACCTCAGAACGGCACAGC caagcatgcaatgattccaaagggattgaaccactgtctttgtttcctagTTTGCTCAGGGTCCACTTCTGGACGGATTGTATTGGACAAAGTGGTACAACAATCAAAGCCTAGGGCATGGGTCCCATTCATTCATCTACTATGAGAACCGGCTTCTGGGGGCACCG---TTGCGACAATTGCATGTACGAAATGACACCTGTGTGGTCCATGAGGACTTTCGGGAAGACATTCTTAACTGTTATGATGTGTATTTACCAGACAAAGAAGATTACTTCCCCTTTGGACCTCAGATTGGTACAGTgtgagtggcttacctaggaattctcaaggaccactgctagccatggttgt Alignment from Spaln_nt2Genome TTTGCTCAGGGCCCACTCCTGGACAGTTTGTACTGGACAAAGTGGTACAACAACCAGAGCCTGGGGCGTGGCTCCCACTCCTTCATCTACTATGAGAACCTGCTCCTGGGAGCCCCAAGGTTGCGGCAGCTGCGCGTGCGCAATGACTCCTGTGTGGTTCATGAAGACTTCCGGGAGGACATTTTGAACTGTTATGATGTGTACTCGCCGGACAAAGAAGATCAGCTCCCCTTTGGACCTCAGAACGGCACAGC caagcatgcaatgattccaaagggattgaaccactgtctttgtttcctagTTTGCTCAGGGTCCACTTCTGGACGGATTGTATTGGACAAAGTGGTACAACAATCAAAGCCTAGGGCATGGGTCCCATTCATTCATCTACTATGAGAACCGGCTTCTGGGGGCACC---GTTGCGACAATTGCATGTACGAAATGACACCTGTGTGGTCCATGAGGACTTTCGGGAAGACATTCTTAACTGTTATGATGTGTATTTACCAGACAAAGAAGATTACTTCCCCTTTGGACCTCAGATTGGTACAGTgtgagtggcttacctaggaattctcaaggaccactgctagccatggttgt Alignment from Pairagon TTTGCTCAGGGCCCACTCCTGGACAGTTTGTACTGGACAAAGTGGTACAACAACCAGAGCCTGGGGCGTGGCTCCCACTCCTTCATCTACTATGAGAACCTGCTCCTGGGAGCCCCAAGGTTGCGGCAGCTGCGCGTGCGCAATGACTCCTGTGTGGTTCATGAAGACTTCCGGGAGGACATTTTGAACTGTTATGATGTGTACTCGCCGGACAAAGAAGATCAGCTCCCCTTTGGACCTCAGAACGGCACAGC caagcatgcaatgattccaaagggattgaaccactgtctttgtttcctagTTTGCTCAGGGTCCACTTCTGGACGGATTGTATTGGACAAAGTGGTACAACAATCAAAGCCTAGGGCATGGGTCCCATTCATTCATCTACTATGAGAACCGGCTTCTGGGGGCACC---GTTGCGACAATTGCATGTACGAAATGACACCTGTGTGGTCCATGAGGACTTTCGGGAAGACATTCTTAACTGTTATGATGTGTATTTACCAGACAAAGAAGATTACTTCCCCTTTGGACCTCAGATTGGTACAGTgtgagtggcttacctaggaattctcaaggaccactgctagccatggttgt Alignment from Exonerate_protein2genome TTTGCTCAGGGCCCACTCCTGGACAGTTTGTACTGGACAAAGTGGTACAACAACCAGAGCCTGGGGCGTGGCTCCCACTCCTTCATCTACTATGAGAACCTGCTCCTGGGAGCCCCAAGGTTGCGGCAGCTGCGCGTGCGCAATGACTCCTGTGTGGTTCATGAAGACTTCCGGGAGGACATTTTGAACTGTTATGATGTGTACTCGCCGGACAAAGAAGATCAGCTCCCCTTTGGACCTCAGAACGGCACAGC caagcatgcaatgattccaaagggattgaaccactgtctttgtttcctagTTTGCTCAGGGTCCACTTCTGGACGGATTGTATTGGACAAAGTGGTACAACAATCAAAGCCTAGGGCATGGGTCCCATTCATTCATCTACTATGAGAACCGGCTTCTGGGGGCACCG---TTGCGACAATTGCATGTACGAAATGACACCTGTGTGGTCCATGAGGACTTTCGGGAAGACATTCTTAACTGTTATGATGTGTATTTACCAGACAAAGAAGATTACTTCCCCTTTGGACCTCAGATTGGTACAGTgtgagtggcttacctaggaattctcaaggaccactgctagccatggttgt Alignment from Exonerate_coding2genome TTTGCTCAGGGCCCACTCCTGGACAGTTTGTACTGGACAAAGTGGTACAACAACCAGAGCCTGGGGCGTGGCTCCCACTCCTTCATCTACTATGAGAACCTGCTCCTGGGAGCCCCAAGGTTGCGGCAGCTGCGCGTGCGCAATGACTCCTGTGTGGTTCATGAAGACTTCCGGGAGGACATTTTGAACTGTTATGATGTGTACTCGCCGGACAAAGAAGATCAGCTCCCCTTTGGACCTCAGAACGGCACAGC caagcatgcaatgattccaaagggattgaaccactgtctttgtttcctagTTTGCTCAGGGTCCACTTCTGGACGGATTGTATTGGACAAAGTGGTACAACAATCAAAGCCTAGGGCATGGGTCCCATTCATTCATCTACTATGAGAACCGGCTTCTGGGGGCACCG---TTGCGACAATTGCATGTACGAAATGACACCTGTGTGGTCCATGAGGACTTTCGGGAAGACATTCTTAACTGTTATGATGTGTATTTACCAGACAAAGAAGATTACTTCCCCTTTGGACCTCAGATTGGTACAGTgtgagtggcttacctaggaattctcaaggaccactgctagccatggttgt Alignment from GeneWise TTTGCTCAGGGCCCACTCCTGGACAGTTTGTACTGGACAAAGTGGTACAACAACCAGAGCCTGGGGCGTGGCTCCCACTCCTTCATCTACTATGAGAACCTGCTCCTGGGAGCCCCAAGGTTGCGGCAGCTGCGCGTGCGCAATGACTCCTGTGTGGTTCATGAAGACTTCCGGGAGGACATTTTGAACTGTTATGATGTGTACTCGCCGGACAAAGAAGATCAGCTCCCCTTTGGACCTCAGAACGGCACAGC caagcatgcaatgattccaaagggattgaaccactgtctttgtttcctagTTTGCTCAGGGTCCACTTCTGGACGGATTGTATTGGACAAAGTGGTACAACAATCAAAGCCTAGGGCATGGGTCCCATTCATTCATCTACTATGAGAACCGGCTTCTGGGGGCACCG---TTGCGACAATTGCATGTACGAAATGACACCTGTGTGGTCCATGAGGACTTTCGGGAAGACATTCTTAACTGTTATGATGTGTATTTACCAGACAAAGAAGATTACTTCCCCTTTGGACCTCAGATTGGTACAGTgtgagtggcttacctaggaattctcaaggaccactgctagccatggttgt #### Plcb3_ID1901_30 --> 0 - 0 Original Alignment CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG ttcctcatcattgctcagacttccaaccctttctctttctatctgctcagTTGGGAGAGGCCCAAAAACAGCAACATGAGCGGCTAGTGGCAGGACAACAGCAAGTCCTCCAGCAACTAGAGGAAGAGAAACCAAAAgtaagactctgtagggttgcatgtacacactaataggggaactggtcagc Alignment from CESAR CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG ttcctcatcattgctcagacttccaaccctttctctttctatctgctcagTTGGGAGAGGCCCAAAAACAGCAACATGAGCGGCTAGTGGCAGGACAACAGCAAGTCCTCCAGCAACTAGAGGAAGAGAAACCAAAAgtaagactctgtagggttgcatgtacacactaataggggaactggtcagc Alignment from Spaln_aa2Genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG ttcctcatcattgctcagacttccaaccctttctctttctatctgctcagTTGGGAGAGGCCCAAAAACAGCAACATGAGCGGCTAGTGGCAGGACAACAGCAAGTCCTCCAGCAACTAGAGGAAGAGAAACCAAAAgtaagactctgtagggttgcatgtacacactaataggggaactggtcagc Alignment from Spaln_nt2Genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG ttcctcatcattgctcagacttccaaccctttctctttctatctgctcagTTGGGAGAGGCCCAAAAACAGCAACATGAGCGGCTAGTGGCAGGACAACAGCAAGTCCTCCAGCAACTAGAGGAAGAGAAACCAAAAgtaagactctgtagggttgcatgtacacactaataggggaactggtcagc Alignment from Pairagon CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG ttcctcatcattgctcagacttccaaccctttctctttctatctgctcagTTGGGAGAGGCCCAAAAACAGCAACATGAGCGGCTAGTGGCAGGACAACAGCAAGTCCTCCAGCAACTAGAGGAAGAGAAACCAAAAgtaagactctgtagggttgcatgtacacactaataggggaactggtcagc Alignment from Exonerate_protein2genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG ttcctcatcattgctcagacttccaaccctttctctttctatctgctcagTTGGGAGAGGCCCAAAAACAGCAACATGAGCGGCTAGTGGCAGGACAACAGCAAGTCCTCCAGCAACTAGAGGAAGAGAAACCAAAAgtaagactctgtagggttgcatgtacacactaataggggaactggtcagc Alignment from Exonerate_coding2genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG ttcctcatcattgctcagacttccaaccctttctctttctatctgctcagTTGGGAGAGGCCCAAAAACAGCAACATGAGCGGCTAGTGGCAGGACAACAGCAAGTCCTCCAGCAACTAGAGGAAGAGAAACCAAAAgtaagactctgtagggttgcatgtacacactaataggggaactggtcagc Alignment from GeneWise CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG ttcctcatcattgctcagacttccaaccctttctctttctatctgctcagTTGGGAGAGGCCCAAAAACAGCAACATGAGCGGCTAGTGGCAGGACAACAGCAAGTCCTCCAGCAACTAGAGGAAGAGAAACCAAAAgtaagactctgtagggttgcatgtacacactaataggggaactggtcagc #### Plcb3_ID1909_22 --> 2 - 0 Original Alignment acTATGCGGAGGCCTTGATTAACCCCATCAAGCACGTAAGCCTAATGGACCAGCGGGCCAAGCAACTAGCCGCTCTCATTGGGGAGAGTGAG gccaaggcctgtccaatgacctaagggtaaagcttctctctcatcaccagacTATGCAGAGGCCCTAATTAATCCTATCAAGCATGTAAGCCTGATGGACCAACGGGCAAAACAGCTGGCTGCTCTCATTGGGGAGAGTGAGgtaagttaggaggatagacttcaggttggccactgatgagcacctacaca Alignment from CESAR acTATGCGGAGGCCTTGATTAACCCCATCAAGCACGTAAGCCTAATGGACCAGCGGGCCAAGCAACTAGCCGCTCTCATTGGGGAGAGTGAG gccaaggcctgtccaatgacctaagggtaaagcttctctctcatcaccagacTATGCAGAGGCCCTAATTAATCCTATCAAGCATGTAAGCCTGATGGACCAACGGGCAAAACAGCTGGCTGCTCTCATTGGGGAGAGTGAGgtaagttaggaggatagacttcaggttggccactgatgagcacctacaca Alignment from Spaln_aa2Genome ACTATGCGGAGGCCTTGATTAACCCCATCAAGCACGTAAGCCTAATGGACCAGCGGGCCAAGCAACTAGCCGCTCTCATTGGGGAGAGTGAG gccaaggcctgtccaatgacctaagggtaaagcttctctctcatcaccagACTATGCAGAGGCCCTAATTAATCCTATCAAGCATGTAAGCCTGATGGACCAACGGGCAAAACAGCTGGCTGCTCTCATTGGGGAGAGTGAGgtaagttaggaggatagacttcaggttggccactgatgagcacctacaca Alignment from Spaln_nt2Genome ACTATGCGGAGGCCTTGATTAACCCCATCAAGCACGTAAGCCTAATGGACCAGCGGGCCAAGCAACTAGCCGCTCTCATTGGGGAGAGTGAG gccaaggcctgtccaatgacctaagggtaaagcttctctctcatcaccagACTATGCAGAGGCCCTAATTAATCCTATCAAGCATGTAAGCCTGATGGACCAACGGGCAAAACAGCTGGCTGCTCTCATTGGGGAGAGTGAGgtaagttaggaggatagacttcaggttggccactgatgagcacctacaca Alignment from Pairagon ACTATGCGGAGGCCTTGATTAACCCCATCAAGCACGTAAGCCTAATGGACCAGCGGGCCAAGCAACTAGCCGCTCTCATTGGGGAGAGTGAG gccaaggcctgtccaatgacctaagggtaaagcttctctctcatcaccagACTATGCAGAGGCCCTAATTAATCCTATCAAGCATGTAAGCCTGATGGACCAACGGGCAAAACAGCTGGCTGCTCTCATTGGGGAGAGTGAGgtaagttaggaggatagacttcaggttggccactgatgagcacctacaca Alignment from Exonerate_protein2genome ACTATGCGGAGGCCTTGATTAACCCCATCAAGCACGTAAGCCTAATGGACCAGCGGGCCAAGCAACTAGCCGCTCTCATTGGGGAGAGTGAG gccaaggcctgtccaatgacctaagggtaaagcttctctctcatcaccagACTATGCAGAGGCCCTAATTAATCCTATCAAGCATGTAAGCCTGATGGACCAACGGGCAAAACAGCTGGCTGCTCTCATTGGGGAGAGTGAGgtaagttaggaggatagacttcaggttggccactgatgagcacctacaca Alignment from Exonerate_coding2genome ACTATGCGGAGGCCTTGATTAACCCCATCAAGCACGTAAGCCTAATGGACCAGCGGGCCAAGCAACTAGCCGCTCTCATTGGGGAGAGTGAG gccaaggcctgtccaatgacctaagggtaaagcttctctctcatcaccagACTATGCAGAGGCCCTAATTAATCCTATCAAGCATGTAAGCCTGATGGACCAACGGGCAAAACAGCTGGCTGCTCTCATTGGGGAGAGTGAGgtaagttaggaggatagacttcaggttggccactgatgagcacctacaca Alignment from GeneWise ACTATGCGGAGGCCTTGATTAACCCCATCAAGCACGTAAGCCTAATGGACCAGCGGGCCAAGCAACTAGCCGCTCTCATTGGGGAGAGTGAG gccaaggcctgtccaatgacctaagggtaaagcttctctctcatcaccagACTATGCAGAGGCCCTAATTAATCCTATCAAGCATGTAAGCCTGATGGACCAACGGGCAAAACAGCTGGCTGCTCTCATTGGGGAGAGTGAGgtaagttaggaggatagacttcaggttggccactgatgagcacctacaca #### Plcb3_ID1913_18 --> 2 - 0 Original Alignment atTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG catgcaatgttttctgatctcactctgcatgttcttgtcttttcttgcagatCTGCCAATGCAGCTCAATGCAGGTGTTGTTGAGTACAATGGGCGCAGTGGGTACTTGCTCAAGCCTGAGTTTATGCGACGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGCTCTAGTGGCCAATGCATTGAGGGTCAAGgtaggggcataatagttaaccttattttacaacaatgtattgtgggtcaa Alignment from CESAR atTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG catgcaatgttttctgatctcactctgcatgttcttgtcttttcttgcagatCTGCCAATGCAGCTCAATGCAGGTGTTGTTGAGTACAATGGGCGCAGTGGGTACTTGCTCAAGCCTGAGTTTATGCGACGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGCTCTAGTGGCCAATGCATTGAGGGTCAAGgtaggggcataatagttaaccttattttacaacaatgtattgtgggtcaa Alignment from Spaln_aa2Genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG catgcaatgttttctgatctcactctgcatgttcttgtcttttcttgcagATCTGCCAATGCAGCTCAATGCAGGTGTTGTTGAGTACAATGGGCGCAGTGGGTACTTGCTCAAGCCTGAGTTTATGCGACGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGCTCTAGTGGCCAATGCATTGAGGGTCAAGgtaggggcataatagttaaccttattttacaacaatgtattgtgggtcaa Alignment from Spaln_nt2Genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG catgcaatgttttctgatctcactctgcatgttcttgtcttttcttgcagATCTGCCAATGCAGCTCAATGCAGGTGTTGTTGAGTACAATGGGCGCAGTGGGTACTTGCTCAAGCCTGAGTTTATGCGACGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGCTCTAGTGGCCAATGCATTGAGGGTCAAGgtaggggcataatagttaaccttattttacaacaatgtattgtgggtcaa Alignment from Pairagon ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG catgcaatgttttctgatctcactctgcatgttcttgtcttttcttgcagATCTGCCAATGCAGCTCAATGCAGGTGTTGTTGAGTACAATGGGCGCAGTGGGTACTTGCTCAAGCCTGAGTTTATGCGACGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGCTCTAGTGGCCAATGCATTGAGGGTCAAGgtaggggcataatagttaaccttattttacaacaatgtattgtgggtcaa Alignment from Exonerate_protein2genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG catgcaatgttttctgatctcactctgcatgttcttgtcttttcttgcagATCTGCCAATGCAGCTCAATGCAGGTGTTGTTGAGTACAATGGGCGCAGTGGGTACTTGCTCAAGCCTGAGTTTATGCGACGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGCTCTAGTGGCCAATGCATTGAGGGTCAAGgtaggggcataatagttaaccttattttacaacaatgtattgtgggtcaa Alignment from Exonerate_coding2genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG catgcaatgttttctgatctcactctgcatgttcttgtcttttcttgcagATCTGCCAATGCAGCTCAATGCAGGTGTTGTTGAGTACAATGGGCGCAGTGGGTACTTGCTCAAGCCTGAGTTTATGCGACGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGCTCTAGTGGCCAATGCATTGAGGGTCAAGgtaggggcataatagttaaccttattttacaacaatgtattgtgggtcaa Alignment from GeneWise ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG catgcaatgttttctgatctcactctgcatgttcttgtcttttcttgcagATCTGCCAATGCAGCTCAATGCAGGTGTTGTTGAGTACAATGGGCGCAGTGGGTACTTGCTCAAGCCTGAGTTTATGCGACGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGCTCTAGTGGCCAATGCATTGAGGGTCAAGgtaggggcataatagttaaccttattttacaacaatgtattgtgggtcaa #### Plcb3_ID1915_16 --> 2 - 2 Original Alignment aaAGGAACAAGTGCTTCGAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGga catcaggttggtctttcaggtgattgctctttctaattctttttccttagaaAGGAACAAGTGTTTTAGAATGTCATCTTTTGCAGAAACCAAAGCA------------ACCAAGAGCCCTATGGAGCTAGTGgagtgagttcatcaatgtgtagtgcgaggacgataactttgttgcctacaat Alignment from CESAR aaAGGAACAAGTGCTTCGAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGga catcaggttggtctttcaggtgattgctctttctaattctttttccttagaaAGGAACAAGTGTTTTAGAATGTCATCTTTTGCAGAAACCAAAGCA------------ACCAAGAGCCCTATGGAGCTAGTGgagtgagttcatcaatgtgtagtgcgaggacgataactttgttgcctacaat Alignment from Spaln_aa2Genome AAAGGAACAAGTGCTTCGAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA catcaggttggtctttcaggtgattgctctttctaattctttttccttagAAAGGAACAAGTGTTTTAGAATGTCATCTTTTGCAGAAACCAAAGCA------------ACCAAGAGCCCTATGGAGCTAGTGGAgtgagttcatcaatgtgtagtgcgaggacgataactttgttgcctacaat Alignment from Spaln_nt2Genome AAAGGAACAAGTGCTTCGAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA catcaggttggtctttcaggtgattgctctttctaattctttttccttagAAAGGAACAAGTGTTTTAGAATGTCATCTTTTGCAGAAACCAAAGCA------------ACCAAGAGCCCTATGGAGCTAGTGGAgtgagttcatcaatgtgtagtgcgaggacgataactttgttgcctacaat Alignment from Pairagon AAAGGAACAAGTGCTTCGAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA catcaggttggtctttcaggtgattgctctttctaattctttttccttagAAAGGAACAAGTGTTTTAGAATGTCATCTTTTGCAGAAACCAAAGCA------------ACCAAGAGCCCTATGGAGCTAGTGGAgtgagttcatcaatgtgtagtgcgaggacgataactttgttgcctacaat Alignment from Exonerate_protein2genome AAAGGAACAAGTGCTTCGAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA catcaggttggtctttcaggtgattgctctttctaattctttttccttagAAAGGAACAAGTGTTTTAGAATGTCATCTTTTGCAGAAACCAAAGCA------------ACCAAGAGCCCTATGGAGCTAGTGGAgtgagttcatcaatgtgtagtgcgaggacgataactttgttgcctacaat Alignment from Exonerate_coding2genome AAAGGAACAAGTGCTTCGAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA catcaggttggtctttcaggtgattgctctttctaattctttttccttagAAAGGAACAAGTGTTTTAGAATGTCATCTTTTGCAGAAACCAAAGCA------------ACCAAGAGCCCTATGGAGCTAGTGGAgtgagttcatcaatgtgtagtgcgaggacgataactttgttgcctacaat Alignment from GeneWise AAAGGAACAAGTGCTTCGAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA catcaggttggtctttcaggtgattgctctttctaattctttttccttagAAAGGAACAAGTGTTTTAGAATGTCATCTTTTGCAGAAACCAAAGCA------------ACCAAGAGCCCTATGGAGCTAGTGGAgtgagttcatcaatgtgtagtgcgaggacgataactttgttgcctacaat #### Plcb3_ID1916_15 --> 0 - 1 Original Alignment GGCACAGCCAGCAGTGAGGTCAATGCCACGGAGGAGATGTCAACGCTCGTCAACTACGTTGAGCCCGTCAAGTTCAAGTCCTTCGAGGCTGCTCGAa tccacccaattactgtatcaattagtgagcattgttgattatcgtcatagGGCACTGCTAGCAGTGACATCAATGCCACAGAGGAGATGTCAATGCTAGTTAACTATGTTGAACCTGTGAAGTTCAAATCCTTTGAAGCTGCCCGAagtgggtactcatgggtagtattgcatcaggttggtctttcaggtgattgc Alignment from CESAR GGCACAGCCAGCAGTGAGGTCAATGCCACGGAGGAGATGTCAACGCTCGTCAACTACGTTGAGCCCGTCAAGTTCAAGTCCTTCGAGGCTGCTCGAa tccacccaattactgtatcaattagtgagcattgttgattatcgtcatagGGCACTGCTAGCAGTGACATCAATGCCACAGAGGAGATGTCAATGCTAGTTAACTATGTTGAACCTGTGAAGTTCAAATCCTTTGAAGCTGCCCGAagtgggtactcatgggtagtattgcatcaggttggtctttcaggtgattgc Alignment from Spaln_aa2Genome GGCACAGCCAGCAGTGAGGTCAATGCCACGGAGGAGATGTCAACGCTCGTCAACTACGTTGAGCCCGTCAAGTTCAAGTCCTTCGAGGCTGCTCGAA tccacccaattactgtatcaattagtgagcattgttgattatcgtcatagGGCACTGCTAGCAGTGACATCAATGCCACAGAGGAGATGTCAATGCTAGTTAACTATGTTGAACCTGTGAAGTTCAAATCCTTTGAAGCTGCCCGAAgtgggtactcatgggtagtattgcatcaggttggtctttcaggtgattgc Alignment from Spaln_nt2Genome GGCACAGCCAGCAGTGAGGTCAATGCCACGGAGGAGATGTCAACGCTCGTCAACTACGTTGAGCCCGTCAAGTTCAAGTCCTTCGAGGCTGCTCGAA tccacccaattactgtatcaattagtgagcattgttgattatcgtcatagGGCACTGCTAGCAGTGACATCAATGCCACAGAGGAGATGTCAATGCTAGTTAACTATGTTGAACCTGTGAAGTTCAAATCCTTTGAAGCTGCCCGAAgtgggtactcatgggtagtattgcatcaggttggtctttcaggtgattgc Alignment from Pairagon GGCACAGCCAGCAGTGAGGTCAATGCCACGGAGGAGATGTCAACGCTCGTCAACTACGTTGAGCCCGTCAAGTTCAAGTCCTTCGAGGCTGCTCGAA tccacccaattactgtatcaattagtgagcattgttgattatcgtcatagGGCACTGCTAGCAGTGACATCAATGCCACAGAGGAGATGTCAATGCTAGTTAACTATGTTGAACCTGTGAAGTTCAAATCCTTTGAAGCTGCCCGAAgtgggtactcatgggtagtattgcatcaggttggtctttcaggtgattgc Alignment from Exonerate_protein2genome GGCACAGCCAGCAGTGAGGTCAATGCCACGGAGGAGATGTCAACGCTCGTCAACTACGTTGAGCCCGTCAAGTTCAAGTCCTTCGAGGCTGCTCGAA tccacccaattactgtatcaattagtgagcattgttgattatcgtcatagGGCACTGCTAGCAGTGACATCAATGCCACAGAGGAGATGTCAATGCTAGTTAACTATGTTGAACCTGTGAAGTTCAAATCCTTTGAAGCTGCCCGAAgtgggtactcatgggtagtattgcatcaggttggtctttcaggtgattgc Alignment from Exonerate_coding2genome GGCACAGCCAGCAGTGAGGTCAATGCCACGGAGGAGATGTCAACGCTCGTCAACTACGTTGAGCCCGTCAAGTTCAAGTCCTTCGAGGCTGCTCGAA tccacccaattactgtatcaattagtgagcattgttgattatcgtcatagGGCACTGCTAGCAGTGACATCAATGCCACAGAGGAGATGTCAATGCTAGTTAACTATGTTGAACCTGTGAAGTTCAAATCCTTTGAAGCTGCCCGAAgtgggtactcatgggtagtattgcatcaggttggtctttcaggtgattgc Alignment from GeneWise GGCACAGCCAGCAGTGAGGTCAATGCCACGGAGGAGATGTCAACGCTCGTCAACTACGTTGAGCCCGTCAAGTTCAAGTCCTTCGAGGCTGCTCGAA tccacccaattactgtatcaattagtgagcattgttgattatcgtcatagGGCACTGCTAGCAGTGACATCAATGCCACAGAGGAGATGTCAATGCTAGTTAACTATGTTGAACCTGTGAAGTTCAAATCCTTTGAAGCTGCCCGAAgtgggtactcatgggtagtattgcatcaggttggtctttcaggtgattgc #### Plcb3_ID1928_3 --> 0 - 0 Original Alignment GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG taaatcggtggacaaccttgttccttgatctctgttttggtgcctcatagGAGGTGGACACACTGGATATCAGCTCGATCAGAGGTACAAGGACAGGTCGTTATGCCCACCTGCCCAAAgtgagtcactggctttgcacatgtaaataccacaccacttttggggaaca Alignment from CESAR GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG taaatcggtggacaaccttgttccttgatctctgttttggtgcctcatagGAGGTGGACACACTGGATATCAGCTCGATCAGAGGTACAAGGACAGGTCGTTATGCCCACCTGCCCAAAgtgagtcactggctttgcacatgtaaataccacaccacttttggggaaca Alignment from Spaln_aa2Genome GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG taaatcggtggacaaccttgttccttgatctctgttttggtgcctcatagGAGGTGGACACACTGGATATCAGCTCGATCAGAGGTACAAGGACAGGTCGTTATGCCCACCTGCCCAAAgtgagtcactggctttgcacatgtaaataccacaccacttttggggaaca Alignment from Spaln_nt2Genome GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG taaatcggtggacaaccttgttccttgatctctgttttggtgcctcatagGAGGTGGACACACTGGATATCAGCTCGATCAGAGGTACAAGGACAGGTCGTTATGCCCACCTGCCCAAAgtgagtcactggctttgcacatgtaaataccacaccacttttggggaaca Alignment from Pairagon GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG taaatcggtggacaaccttgttccttgatctctgttttggtgcctcatagGAGGTGGACACACTGGATATCAGCTCGATCAGAGGTACAAGGACAGGTCGTTATGCCCACCTGCCCAAAgtgagtcactggctttgcacatgtaaataccacaccacttttggggaaca Alignment from Exonerate_protein2genome GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG taaatcggtggacaaccttgttccttgatctctgttttggtgcctcatagGAGGTGGACACACTGGATATCAGCTCGATCAGAGGTACAAGGACAGGTCGTTATGCCCACCTGCCCAAAgtgagtcactggctttgcacatgtaaataccacaccacttttggggaaca Alignment from Exonerate_coding2genome taaatcggtggacaaccttgttccttgatctctgttttggtgcctcataggaggtggacacactggatatcagctcgatcagaggtacaaggacaggtcgttatgcccacctgcccaaagtgagtcactggctttgcacatgtaaataccacaccacttttggggaaca Alignment from GeneWise GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG taaatcggtggacaaccttgttccttgatctctgttttggtgcctcatagGAGGTGGACACACTGGATATCAGCTCGATCAGAGGTACAAGGACAGGTCGTTATGCCCACCTGCCCAAAgtgagtcactggctttgcacatgtaaataccacaccacttttggggaaca #### Plce1_ID7607_2 --> 0 - 1 Original Alignment ATCTACAGTGCCGTGAGAAGAGGGGAAGAAATAGAAGATACGGTTGGATCTCTTCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATTGAAGATGGTCCCTGCTTAAAGCAGTGTGTACGAGACACTGAATGTGAATTCCGTGCTACCCTCCAAAGGACATCCATAGCTCAGTACATCACCGGTTCTCTTCTAGAGGCAACTACATCTTTAGGAGCAAGAAGTGGCCTTCTCAGTTCCTTCGGAGGATCCACTGGACGAATAATGCTGAAAg gactttcagacataagaccaaacatcacccattcttttttttttctctagATCTACAGCACTGTGAAGAGAGGGGAAGAAATAGAAGATACAGTTGGATCTTTACTACATTGTTCCACGCAGCTTCCAAACTTTGAGACAGCACATGGAAGGATCACAGATGGTCCCTGTTCAAAGCGGTGTGTACAGGAAACAGAGTGCGAATTCCGTGCTACATTGCTAAGAACACCCATAGCCCAGTACATCACAAGTTCTCTTTTAGAAGCAACGACATCATTGGGTGCCCGAAGTGGCCTTCTCAGTTCCTTTGGTGGCTCAACAGGGAGAATCATGCTGAAAggtaaaaggcaggacaccatcctcagcccctttgatcaccattaataagcg Alignment from CESAR ATCTACAGTGCCGTGAGAAGAGGGGAAGAAATAGAAGATACGGTTGGATCTCTTCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATTGAAGATGGTCCCTGCTTAAAGCAGTGTGTACGAGACACTGAATGTGAATTCCGTGCTACCCTCCAAAGGACATCCATAGCTCAGTACATCACCGGTTCTCTTCTAGAGGCAACTACATCTTTAGGAGCAAGAAGTGGCCTTCTCAGTTCCTTCGGAGGATCCACTGGACGAATAATGCTGAAAg gactttcagacataagaccaaacatcacccattcttttttttttctctagATCTACAGCACTGTGAAGAGAGGGGAAGAAATAGAAGATACAGTTGGATCTTTACTACATTGTTCCACGCAGCTTCCAAACTTTGAGACAGCACATGGAAGGATCACAGATGGTCCCTGTTCAAAGCGGTGTGTACAGGAAACAGAGTGCGAATTCCGTGCTACATTGCTAAGAACACCCATAGCCCAGTACATCACAAGTTCTCTTTTAGAAGCAACGACATCATTGGGTGCCCGAAGTGGCCTTCTCAGTTCCTTTGGTGGCTCAACAGGGAGAATCATGCTGAAAggtaaaaggcaggacaccatcctcagcccctttgatcaccattaataagcg Alignment from Spaln_aa2Genome ATCTACAGTGCCGTGAGAAGAGGGGAAGAAATAGAAGATACGGTTGGATCTCTTCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATTGAAGATGGTCCCTGCTTAAAGCAGTGTGTACGAGACACTGAATGTGAATTCCGTGCTACCCTCCAAAGGACATCCATAGCTCAGTACATCACCGGTTCTCTTCTAGAGGCAACTACATCTTTAGGAGCAAGAAGTGGCCTTCTCAGTTCCTTCGGAGGATCCACTGGACGAATAATGCTGAAAG gactttcagacataagaccaaacatcacccattcttttttttttctctagATCTACAGCACTGTGAAGAGAGGGGAAGAAATAGAAGATACAGTTGGATCTTTACTACATTGTTCCACGCAGCTTCCAAACTTTGAGACAGCACATGGAAGGATCACAGATGGTCCCTGTTCAAAGCGGTGTGTACAGGAAACAGAGTGCGAATTCCGTGCTACATTGCTAAGAACACCCATAGCCCAGTACATCACAAGTTCTCTTTTAGAAGCAACGACATCATTGGGTGCCCGAAGTGGCCTTCTCAGTTCCTTTGGTGGCTCAACAGGGAGAATCATGCTGAAAGgtaaaaggcaggacaccatcctcagcccctttgatcaccattaataagcg Alignment from Spaln_nt2Genome ATCTACAGTGCCGTGAGAAGAGGGGAAGAAATAGAAGATACGGTTGGATCTCTTCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATTGAAGATGGTCCCTGCTTAAAGCAGTGTGTACGAGACACTGAATGTGAATTCCGTGCTACCCTCCAAAGGACATCCATAGCTCAGTACATCACCGGTTCTCTTCTAGAGGCAACTACATCTTTAGGAGCAAGAAGTGGCCTTCTCAGTTCCTTCGGAGGATCCACTGGACGAATAATGCTGAAAG gactttcagacataagaccaaacatcacccattcttttttttttctctagATCTACAGCACTGTGAAGAGAGGGGAAGAAATAGAAGATACAGTTGGATCTTTACTACATTGTTCCACGCAGCTTCCAAACTTTGAGACAGCACATGGAAGGATCACAGATGGTCCCTGTTCAAAGCGGTGTGTACAGGAAACAGAGTGCGAATTCCGTGCTACATTGCTAAGAACACCCATAGCCCAGTACATCACAAGTTCTCTTTTAGAAGCAACGACATCATTGGGTGCCCGAAGTGGCCTTCTCAGTTCCTTTGGTGGCTCAACAGGGAGAATCATGCTGAAAGgtaaaaggcaggacaccatcctcagcccctttgatcaccattaataagcg Alignment from Pairagon ATCTACAGTGCCGTGAGAAGAGGGGAAGAAATAGAAGATACGGTTGGATCTCTTCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATTGAAGATGGTCCCTGCTTAAAGCAGTGTGTACGAGACACTGAATGTGAATTCCGTGCTACCCTCCAAAGGACATCCATAGCTCAGTACATCACCGGTTCTCTTCTAGAGGCAACTACATCTTTAGGAGCAAGAAGTGGCCTTCTCAGTTCCTTCGGAGGATCCACTGGACGAATAATGCTGAAAG gactttcagacataagaccaaacatcacccattcttttttttttctctagATCTACAGCACTGTGAAGAGAGGGGAAGAAATAGAAGATACAGTTGGATCTTTACTACATTGTTCCACGCAGCTTCCAAACTTTGAGACAGCACATGGAAGGATCACAGATGGTCCCTGTTCAAAGCGGTGTGTACAGGAAACAGAGTGCGAATTCCGTGCTACATTGCTAAGAACACCCATAGCCCAGTACATCACAAGTTCTCTTTTAGAAGCAACGACATCATTGGGTGCCCGAAGTGGCCTTCTCAGTTCCTTTGGTGGCTCAACAGGGAGAATCATGCTGAAAGgtaaaaggcaggacaccatcctcagcccctttgatcaccattaataagcg Alignment from Exonerate_protein2genome ATCTACAGTGCCGTGAGAAGAGGGGAAGAAATAGAAGATACGGTTGGATCTCTTCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATTGAAGATGGTCCCTGCTTAAAGCAGTGTGTACGAGACACTGAATGTGAATTCCGTGCTACCCTCCAAAGGACATCCATAGCTCAGTACATCACCGGTTCTCTTCTAGAGGCAACTACATCTTTAGGAGCAAGAAGTGGCCTTCTCAGTTCCTTCGGAGGATCCACTGGACGAATAATGCTGAAAG gactttcagacataagaccaaacatcacccattcttttttttttctctagATCTACAGCACTGTGAAGAGAGGGGAAGAAATAGAAGATACAGTTGGATCTTTACTACATTGTTCCACGCAGCTTCCAAACTTTGAGACAGCACATGGAAGGATCACAGATGGTCCCTGTTCAAAGCGGTGTGTACAGGAAACAGAGTGCGAATTCCGTGCTACATTGCTAAGAACACCCATAGCCCAGTACATCACAAGTTCTCTTTTAGAAGCAACGACATCATTGGGTGCCCGAAGTGGCCTTCTCAGTTCCTTTGGTGGCTCAACAGGGAGAATCATGCTGAAAGgtaaaaggcaggacaccatcctcagcccctttgatcaccattaataagcg Alignment from Exonerate_coding2genome ATCTACAGTGCCGTGAGAAGAGGGGAAGAAATAGAAGATACGGTTGGATCTCTTCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATTGAAGATGGTCCCTGCTTAAAGCAGTGTGTACGAGACACTGAATGTGAATTCCGTGCTACCCTCCAAAGGACATCCATAGCTCAGTACATCACCGGTTCTCTTCTAGAGGCAACTACATCTTTAGGAGCAAGAAGTGGCCTTCTCAGTTCCTTCGGAGGATCCACTGGACGAATAATGCTGAAAG gactttcagacataagaccaaacatcacccattcttttttttttctctagATCTACAGCACTGTGAAGAGAGGGGAAGAAATAGAAGATACAGTTGGATCTTTACTACATTGTTCCACGCAGCTTCCAAACTTTGAGACAGCACATGGAAGGATCACAGATGGTCCCTGTTCAAAGCGGTGTGTACAGGAAACAGAGTGCGAATTCCGTGCTACATTGCTAAGAACACCCATAGCCCAGTACATCACAAGTTCTCTTTTAGAAGCAACGACATCATTGGGTGCCCGAAGTGGCCTTCTCAGTTCCTTTGGTGGCTCAACAGGGAGAATCATGCTGAAAGgtaaaaggcaggacaccatcctcagcccctttgatcaccattaataagcg Alignment from GeneWise ATCTACAGTGCCGTGAGAAGAGGGGAAGAAATAGAAGATACGGTTGGATCTCTTCTCCATTGCTCCACACAGCTCCCAAACTCTGAGACAGCCCATGGAAGGATTGAAGATGGTCCCTGCTTAAAGCAGTGTGTACGAGACACTGAATGTGAATTCCGTGCTACCCTCCAAAGGACATCCATAGCTCAGTACATCACCGGTTCTCTTCTAGAGGCAACTACATCTTTAGGAGCAAGAAGTGGCCTTCTCAGTTCCTTCGGAGGATCCACTGGACGAATAATGCTGAAAG gactttcagacataagaccaaacatcacccattcttttttttttctctagATCTACAGCACTGTGAAGAGAGGGGAAGAAATAGAAGATACAGTTGGATCTTTACTACATTGTTCCACGCAGCTTCCAAACTTTGAGACAGCACATGGAAGGATCACAGATGGTCCCTGTTCAAAGCGGTGTGTACAGGAAACAGAGTGCGAATTCCGTGCTACATTGCTAAGAACACCCATAGCCCAGTACATCACAAGTTCTCTTTTAGAAGCAACGACATCATTGGGTGCCCGAAGTGGCCTTCTCAGTTCCTTTGGTGGCTCAACAGGGAGAATCATGCTGAAAGgtaaaaggcaggacaccatcctcagcccctttgatcaccattaataagcg #### Plce1_ID7616_4 --> 0 - 2 Original Alignment GTGAGCTCCTGGGTAACATGGCTGATCCTCACAGCAGGCTCCATGGAGGAGAAGCGGGAAGTCTTTTCTTATTTGGTGCATGTGGCCAAATGCTGCTGGAACATGGGCAACTACAACGCTGTCATGGAGTTCCTGGCTGGCCTCag agtacccttagagatcaggtcaaaaagaaacaggatgcctacattttcagGTTAGTTCCTGGGTGACATGGCTGATACTTACTGCAGGCTCCATGGAAGAAAAACAAGAAGTCTTTTCCTACTTACTTCATGTGGCCAAGTGTTGCTGGAACATGGGTAACTACAATGCTGTGATGGAATTCTTGGCTGGGCTTcggtaaggaatctaggtgccccagaacctccacaataaatcttccgtctcaa Alignment from CESAR GTGAGCTCCTGGGTAACATGGCTGATCCTCACAGCAGGCTCCATGGAGGAGAAGCGGGAAGTCTTTTCTTATTTGGTGCATGTGGCCAAATGCTGCTGGAACATGGGCAACTACAACGCTGTCATGGAGTTCCTGGCTGGCCTCag agtacccttagagatcaggtcaaaaagaaacaggatgcctacattttcagGTTAGTTCCTGGGTGACATGGCTGATACTTACTGCAGGCTCCATGGAAGAAAAACAAGAAGTCTTTTCCTACTTACTTCATGTGGCCAAGTGTTGCTGGAACATGGGTAACTACAATGCTGTGATGGAATTCTTGGCTGGGCTTcggtaaggaatctaggtgccccagaacctccacaataaatcttccgtctcaa Alignment from Spaln_aa2Genome GTGAGCTCCTGGGTAACATGGCTGATCCTCACAGCAGGCTCCATGGAGGAGAAGCGGGAAGTCTTTTCTTATTTGGTGCATGTGGCCAAATGCTGCTGGAACATGGGCAACTACAACGCTGTCATGGAGTTCCTGGCTGGCCTCAG agtacccttagagatcaggtcaaaaagaaacaggatgcctacattttcagGTTAGTTCCTGGGTGACATGGCTGATACTTACTGCAGGCTCCATGGAAGAAAAACAAGAAGTCTTTTCCTACTTACTTCATGTGGCCAAGTGTTGCTGGAACATGGGTAACTACAATGCTGTGATGGAATTCTTGGCTGGGCTTCGgtaaggaatctaggtgccccagaacctccacaataaatcttccgtctcaa Alignment from Spaln_nt2Genome GTGAGCTCCTGGGTAACATGGCTGATCCTCACAGCAGGCTCCATGGAGGAGAAGCGGGAAGTCTTTTCTTATTTGGTGCATGTGGCCAAATGCTGCTGGAACATGGGCAACTACAACGCTGTCATGGAGTTCCTGGCTGGCCTCAG agtacccttagagatcaggtcaaaaagaaacaggatgcctacattttcagGTTAGTTCCTGGGTGACATGGCTGATACTTACTGCAGGCTCCATGGAAGAAAAACAAGAAGTCTTTTCCTACTTACTTCATGTGGCCAAGTGTTGCTGGAACATGGGTAACTACAATGCTGTGATGGAATTCTTGGCTGGGCTTCGgtaaggaatctaggtgccccagaacctccacaataaatcttccgtctcaa Alignment from Pairagon GTGAGCTCCTGGGTAACATGGCTGATCCTCACAGCAGGCTCCATGGAGGAGAAGCGGGAAGTCTTTTCTTATTTGGTGCATGTGGCCAAATGCTGCTGGAACATGGGCAACTACAACGCTGTCATGGAGTTCCTGGCTGGCCTCAG agtacccttagagatcaggtcaaaaagaaacaggatgcctacattttcagGTTAGTTCCTGGGTGACATGGCTGATACTTACTGCAGGCTCCATGGAAGAAAAACAAGAAGTCTTTTCCTACTTACTTCATGTGGCCAAGTGTTGCTGGAACATGGGTAACTACAATGCTGTGATGGAATTCTTGGCTGGGCTTCGgtaaggaatctaggtgccccagaacctccacaataaatcttccgtctcaa Alignment from Exonerate_protein2genome GTGAGCTCCTGGGTAACATGGCTGATCCTCACAGCAGGCTCCATGGAGGAGAAGCGGGAAGTCTTTTCTTATTTGGTGCATGTGGCCAAATGCTGCTGGAACATGGGCAACTACAACGCTGTCATGGAGTTCCTGGCTGGCCTCAG agtacccttagagatcaggtcaaaaagaaacaggatgcctacattttcagGTTAGTTCCTGGGTGACATGGCTGATACTTACTGCAGGCTCCATGGAAGAAAAACAAGAAGTCTTTTCCTACTTACTTCATGTGGCCAAGTGTTGCTGGAACATGGGTAACTACAATGCTGTGATGGAATTCTTGGCTGGGCTTCGgtaaggaatctaggtgccccagaacctccacaataaatcttccgtctcaa Alignment from Exonerate_coding2genome GTGAGCTCCTGGGTAACATGGCTGATCCTCACAGCAGGCTCCATGGAGGAGAAGCGGGAAGTCTTTTCTTATTTGGTGCATGTGGCCAAATGCTGCTGGAACATGGGCAACTACAACGCTGTCATGGAGTTCCTGGCTGGCCTCAG agtacccttagagatcaggtcaaaaagaaacaggatgcctacattttcagGTTAGTTCCTGGGTGACATGGCTGATACTTACTGCAGGCTCCATGGAAGAAAAACAAGAAGTCTTTTCCTACTTACTTCATGTGGCCAAGTGTTGCTGGAACATGGGTAACTACAATGCTGTGATGGAATTCTTGGCTGGGCTTCGgtaaggaatctaggtgccccagaacctccacaataaatcttccgtctcaa Alignment from GeneWise GTGAGCTCCTGGGTAACATGGCTGATCCTCACAGCAGGCTCCATGGAGGAGAAGCGGGAAGTCTTTTCTTATTTGGTGCATGTGGCCAAATGCTGCTGGAACATGGGCAACTACAACGCTGTCATGGAGTTCCTGGCTGGCCTCAG agtacccttagagatcaggtcaaaaagaaacaggatgcctacattttcagGTTAGTTCCTGGGTGACATGGCTGATACTTACTGCAGGCTCCATGGAAGAAAAACAAGAAGTCTTTTCCTACTTACTTCATGTGGCCAAGTGTTGCTGGAACATGGGTAACTACAATGCTGTGATGGAATTCTTGGCTGGGCTTCGgtaaggaatctaggtgccccagaacctccacaataaatcttccgtctcaa #### Plce1_ID7617_5 --> 1 - 0 Original Alignment gTCAAGGAAAGTTCTAAAGATGTGGCAGTTCATGGACCAGTCTGACATTGAGACCATGCGGAGCCTGAAGGATGCCATGGCCCAGCATGAGTCTTCCGTGGAGTACAAGAAGGTAGTGACCCGAGCCTTGCACATCCCCGGCTGCAAAGTGGTCCCCTTCTGTGGGGTGTTCCTGAAGGAGCTCTGTGAGGTGCTTGATGGTGCCTCTGGCCTCCTGAAGCTCTGCCCACGGTACAGCTCCCAAGAAGAAGCTCTGGAG cagtaactggacccctggctttttcggatgacttgttttctggagtctaggTCTAGAAAAGTTCTAAAGATGTGGCAGTTTATGGACCAGTCTGAC---GAGACCATGCGGAGCTTGGAGGATGCCATGGCCCAACATGAATCATATGTGGAGTACAAGAGGGTAGTGACTCGGGCCTTACACATCCCTGGTTGTAAAGTGGTACCTTTCTGTGGAATCATTCTGAAAGACCTCTGTGAAGTGTTAGATGTAGCTTCTGGCCTCCTGAAACTCTGTCCACGATACAGCTCGCAGGAGAAAGCACTGGATgtgagattttctaagccctgttctggaaaggggtattttacttacttgct Alignment from CESAR gTCAAGGAAAGTTCTAAAGATGTGGCAGTTCATGGACCAGTCTGACATTGAGACCATGCGGAGCCTGAAGGATGCCATGGCCCAGCATGAGTCTTCCGTGGAGTACAAGAAGGTAGTGACCCGAGCCTTGCACATCCCCGGCTGCAAAGTGGTCCCCTTCTGTGGGGTGTTCCTGAAGGAGCTCTGTGAGGTGCTTGATGGTGCCTCTGGCCTCCTGAAGCTCTGCCCACGGTACAGCTCCCAAGAAGAAGCTCTGGAG cagtaactggacccctggctttttcggatgacttgttttctggagtctaggTCTAGAAAAGTTCTAAAGATGTGGCAGTTTATGGACCAGTCTGAC---GAGACCATGCGGAGCTTGGAGGATGCCATGGCCCAACATGAATCATATGTGGAGTACAAGAGGGTAGTGACTCGGGCCTTACACATCCCTGGTTGTAAAGTGGTACCTTTCTGTGGAATCATTCTGAAAGACCTCTGTGAAGTGTTAGATGTAGCTTCTGGCCTCCTGAAACTCTGTCCACGATACAGCTCGCAGGAGAAAGCACTGGATgtgagattttctaagccctgttctggaaaggggtattttacttacttgct Alignment from Spaln_aa2Genome GTCAAGGAAAGTTCTAAAGATGTGGCAGTTCATGGACCAGTCTGACATTGAGACCATGCGGAGCCTGAAGGATGCCATGGCCCAGCATGAGTCTTCCGTGGAGTACAAGAAGGTAGTGACCCGAGCCTTGCACATCCCCGGCTGCAAAGTGGTCCCCTTCTGTGGGGTGTTCCTGAAGGAGCTCTGTGAGGTGCTTGATGGTGCCTCTGGCCTCCTGAAGCTCTGCCCACGGTACAGCTCCCAAGAAGAAGCTCTGGAG cagtaactggacccctggctttttcggatgacttgttttctggagtctagGTCTAGAAAAGTTCTAAAGATGTGGCAGTTTATGGACCAGTCTGAC---GAGACCATGCGGAGCTTGGAGGATGCCATGGCCCAACATGAATCATATGTGGAGTACAAGAGGGTAGTGACTCGGGCCTTACACATCCCTGGTTGTAAAGTGGTACCTTTCTGTGGAATCATTCTGAAAGACCTCTGTGAAGTGTTAGATGTAGCTTCTGGCCTCCTGAAACTCTGTCCACGATACAGCTCGCAGGAGAAAGCACTGGATgtgagattttctaagccctgttctggaaaggggtattttacttacttgct Alignment from Spaln_nt2Genome GTCAAGGAAAGTTCTAAAGATGTGGCAGTTCATGGACCAGTCTGACATTGAGACCATGCGGAGCCTGAAGGATGCCATGGCCCAGCATGAGTCTTCCGTGGAGTACAAGAAGGTAGTGACCCGAGCCTTGCACATCCCCGGCTGCAAAGTGGTCCCCTTCTGTGGGGTGTTCCTGAAGGAGCTCTGTGAGGTGCTTGATGGTGCCTCTGGCCTCCTGAAGCTCTGCCCACGGTACAGCTCCCAAGAAGAAGCTCTGGAG cagtaactggacccctggctttttcggatgacttgttttctggagtctagGTCTAGAAAAGTTCTAAAGATGTGGCAGTTTATGGACCAGTCTGAC---GAGACCATGCGGAGCTTGGAGGATGCCATGGCCCAACATGAATCATATGTGGAGTACAAGAGGGTAGTGACTCGGGCCTTACACATCCCTGGTTGTAAAGTGGTACCTTTCTGTGGAATCATTCTGAAAGACCTCTGTGAAGTGTTAGATGTAGCTTCTGGCCTCCTGAAACTCTGTCCACGATACAGCTCGCAGGAGAAAGCACTGGATgtgagattttctaagccctgttctggaaaggggtattttacttacttgct Alignment from Pairagon GTCAAGGAAAGTTCTAAAGATGTGGCAGTTCATGGACCAGTCTGACATTGAGACCATGCGGAGCCTGAAGGATGCCATGGCCCAGCATGAGTCTTCCGTGGAGTACAAGAAGGTAGTGACCCGAGCCTTGCACATCCCCGGCTGCAAAGTGGTCCCCTTCTGTGGGGTGTTCCTGAAGGAGCTCTGTGAGGTGCTTGATGGTGCCTCTGGCCTCCTGAAGCTCTGCCCACGGTACAGCTCCCAAGAAGAAGCTCTGGAG cagtaactggacccctggctttttcggatgacttgttttctggagtctagGTCTAGAAAAGTTCTAAAGATGTGGCAGTTTATGGACCAGTCTGAC---GAGACCATGCGGAGCTTGGAGGATGCCATGGCCCAACATGAATCATATGTGGAGTACAAGAGGGTAGTGACTCGGGCCTTACACATCCCTGGTTGTAAAGTGGTACCTTTCTGTGGAATCATTCTGAAAGACCTCTGTGAAGTGTTAGATGTAGCTTCTGGCCTCCTGAAACTCTGTCCACGATACAGCTCGCAGGAGAAAGCACTGGATgtgagattttctaagccctgttctggaaaggggtattttacttacttgct Alignment from Exonerate_protein2genome GTCAAGGAAAGTTCTAAAGATGTGGCAGTTCATGGACCAGTCTGACATTGAGACCATGCGGAGCCTGAAGGATGCCATGGCCCAGCATGAGTCTTCCGTGGAGTACAAGAAGGTAGTGACCCGAGCCTTGCACATCCCCGGCTGCAAAGTGGTCCCCTTCTGTGGGGTGTTCCTGAAGGAGCTCTGTGAGGTGCTTGATGGTGCCTCTGGCCTCCTGAAGCTCTGCCCACGGTACAGCTCCCAAGAAGAAGCTCTGGAG cagtaactggacccctggctttttcggatgacttgttttctggagtctagGTCTAGAAAAGTTCTAAAGATGTGGCAGTTTATGGACCAGTCTGAC---GAGACCATGCGGAGCTTGGAGGATGCCATGGCCCAACATGAATCATATGTGGAGTACAAGAGGGTAGTGACTCGGGCCTTACACATCCCTGGTTGTAAAGTGGTACCTTTCTGTGGAATCATTCTGAAAGACCTCTGTGAAGTGTTAGATGTAGCTTCTGGCCTCCTGAAACTCTGTCCACGATACAGCTCGCAGGAGAAAGCACTGGATgtgagattttctaagccctgttctggaaaggggtattttacttacttgct Alignment from Exonerate_coding2genome GTCAAGGAAAGTTCTAAAGATGTGGCAGTTCATGGACCAGTCTGACATTGAGACCATGCGGAGCCTGAAGGATGCCATGGCCCAGCATGAGTCTTCCGTGGAGTACAAGAAGGTAGTGACCCGAGCCTTGCACATCCCCGGCTGCAAAGTGGTCCCCTTCTGTGGGGTGTTCCTGAAGGAGCTCTGTGAGGTGCTTGATGGTGCCTCTGGCCTCCTGAAGCTCTGCCCACGGTACAGCTCCCAAGAAGAAGCTCTGGAG cagtaactggacccctggctttttcggatgacttgttttctggagtctagGTCTAGAAAAGTTCTAAAGATGTGGCAGTTTATGGACCAGTCTGAC---GAGACCATGCGGAGCTTGGAGGATGCCATGGCCCAACATGAATCATATGTGGAGTACAAGAGGGTAGTGACTCGGGCCTTACACATCCCTGGTTGTAAAGTGGTACCTTTCTGTGGAATCATTCTGAAAGACCTCTGTGAAGTGTTAGATGTAGCTTCTGGCCTCCTGAAACTCTGTCCACGATACAGCTCGCAGGAGAAAGCACTGGATgtgagattttctaagccctgttctggaaaggggtattttacttacttgct Alignment from GeneWise GTCAAGGAAAGTTCTAAAGATGTGGCAGTTCATGGACCAGTCTGACATTGAGACCATGCGGAGCCTGAAGGATGCCATGGCCCAGCATGAGTCTTCCGTGGAGTACAAGAAGGTAGTGACCCGAGCCTTGCACATCCCCGGCTGCAAAGTGGTCCCCTTCTGTGGGGTGTTCCTGAAGGAGCTCTGTGAGGTGCTTGATGGTGCCTCTGGCCTCCTGAAGCTCTGCCCACGGTACAGCTCCCAAGAAGAAGCTCTGGAG cagtaactggacccctggctttttcggatgacttgttttctggagtctagGTCTAGAAAAGTTCTAAAGATGTGGCAGTTTATGGACCAGTCTGAC---GAGACCATGCGGAGCTTGGAGGATGCCATGGCCCAACATGAATCATATGTGGAGTACAAGAGGGTAGTGACTCGGGCCTTACACATCCCTGGTTGTAAAGTGGTACCTTTCTGTGGAATCATTCTGAAAGACCTCTGTGAAGTGTTAGATGTAGCTTCTGGCCTCCTGAAACTCTGTCCACGATACAGCTCGCAGGAGAAAGCACTGGATgtgagattttctaagccctgttctggaaaggggtattttacttacttgct #### Plce1_ID7619_6 --> 0 - 2 Original Alignment TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGca gtcacatgagaagctacaacattgaaaagatggtttttattctatttcagTTGGTAGCTGATTACAGTGGGCAAGATACCATTTTGCAGCGAGTAGGACAAATAGGGTTAAAAAATGCTGAGAAAGAGCTTACAGTAAATCCTATCCTACAAGTTATCCGGAGTTGCAGCCGAAGGTTGGAGATGGAAGAAGAAGAAAGTGTTAGTGAGGGGACTGGTTCGAGAAAAAATTCCCTGCAGGACAAAGCCAGATGGcagtaggccacagcatgagtgggctagtagctaagcaatcactatacgtccc Alignment from CESAR TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGca gtcacatgagaagctacaacattgaaaagatggtttttattctatttcagTTGGTAGCTGATTACAGTGGGCAAGATACCATTTTGCAGCGAGTAGGACAAATAGGGTTAAAAAATGCTGAGAAAGAGCTTACAGTAAATCCTATCCTACAAGTTATCCGGAGTTGCAGCCGAAGGTTGGAGATGGAAGAAGAAGAAAGTGTTAGTGAGGGGACTGGTTCGAGAAAAAATTCCCTGCAGGACAAAGCCAGATGGcagtaggccacagcatgagtgggctagtagctaagcaatcactatacgtccc Alignment from Spaln_aa2Genome TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGCA gtcacatgagaagctacaacattgaaaagatggtttttattctatttcagTTGGTAGCTGATTACAGTGGGCAAGATACCATTTTGCAGCGAGTAGGACAAATAGGGTTAAAAAATGCTGAGAAAGAGCTTACAGTAAATCCTATCCTACAAGTTATCCGGAGTTGCAGCCGAAGGTTGGAGATGGAAGAAGAAGAAAGTGTTAGTGAGGGGACTGGTTCGAGAAAAAATTCCCTGCAGGACAAAGCCAGATGGCAgtaggccacagcatgagtgggctagtagctaagcaatcactatacgtccc Alignment from Spaln_nt2Genome TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGCA gtcacatgagaagctacaacattgaaaagatggtttttattctatttcagTTGGTAGCTGATTACAGTGGGCAAGATACCATTTTGCAGCGAGTAGGACAAATAGGGTTAAAAAATGCTGAGAAAGAGCTTACAGTAAATCCTATCCTACAAGTTATCCGGAGTTGCAGCCGAAGGTTGGAGATGGAAGAAGAAGAAAGTGTTAGTGAGGGGACTGGTTCGAGAAAAAATTCCCTGCAGGACAAAGCCAGATGGCAgtaggccacagcatgagtgggctagtagctaagcaatcactatacgtccc Alignment from Pairagon TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGCA gtcacatgagaagctacaacattgaaaagatggtttttattctatttcagTTGGTAGCTGATTACAGTGGGCAAGATACCATTTTGCAGCGAGTAGGACAAATAGGGTTAAAAAATGCTGAGAAAGAGCTTACAGTAAATCCTATCCTACAAGTTATCCGGAGTTGCAGCCGAAGGTTGGAGATGGAAGAAGAAGAAAGTGTTAGTGAGGGGACTGGTTCGAGAAAAAATTCCCTGCAGGACAAAGCCAGATGGCAgtaggccacagcatgagtgggctagtagctaagcaatcactatacgtccc Alignment from Exonerate_protein2genome TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGCA gtcacatgagaagctacaacattgaaaagatggtttttattctatttcagTTGGTAGCTGATTACAGTGGGCAAGATACCATTTTGCAGCGAGTAGGACAAATAGGGTTAAAAAATGCTGAGAAAGAGCTTACAGTAAATCCTATCCTACAAGTTATCCGGAGTTGCAGCCGAAGGTTGGAGATGGAAGAAGAAGAAAGTGTTAGTGAGGGGACTGGTTCGAGAAAAAATTCCCTGCAGGACAAAGCCAGATGGCAgtaggccacagcatgagtgggctagtagctaagcaatcactatacgtccc Alignment from Exonerate_coding2genome TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGCA gtcacatgagaagctacaacattgaaaagatggtttttattctatttcagTTGGTAGCTGATTACAGTGGGCAAGATACCATTTTGCAGCGAGTAGGACAAATAGGGTTAAAAAATGCTGAGAAAGAGCTTACAGTAAATCCTATCCTACAAGTTATCCGGAGTTGCAGCCGAAGGTTGGAGATGGAAGAAGAAGAAAGTGTTAGTGAGGGGACTGGTTCGAGAAAAAATTCCCTGCAGGACAAAGCCAGATGGCAgtaggccacagcatgagtgggctagtagctaagcaatcactatacgtccc Alignment from GeneWise TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGCA gtcacatgagaagctacaacattgaaaagatggtttttattctatttcagTTGGTAGCTGATTACAGTGGGCAAGATACCATTTTGCAGCGAGTAGGACAAATAGGGTTAAAAAATGCTGAGAAAGAGCTTACAGTAAATCCTATCCTACAAGTTATCCGGAGTTGCAGCCGAAGGTTGGAGATGGAAGAAGAAGAAAGTGTTAGTGAGGGGACTGGTTCGAGAAAAAATTCCCTGCAGGACAAAGCCAGATGGCAgtaggccacagcatgagtgggctagtagctaagcaatcactatacgtccc #### Plce1_ID7621_7 --> 1 - 0 Original Alignment gTTTATAATTGGAGATTTGCTGGATTCAGAAAATGACATCTTTGAGAAGTCCAAAGAGTGTGACCCCCATGGATCCGAGGAGTCACAGAAAGCCTTTGACCATGGGACAGAGCTTATCCCATGGTACGTGCTGTCCATCCAAGCAGATGTGCACCAGTTCCTATTGCAGGGGGCCACAGTCATCCACTATGACCAGGACACACATCTCTCGGCCCGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACGTTGACCTGGATGAAACCTCCCACTGCCTCCCCAGCAGGCGCCAGACCCAAGCTCGGTGTGCTTAGTAACATGGCCGAGCCTGGCAAGTTCCCATCCCCAGGCAACGCC---GGGGTGAGCGGCCTGGCAGAGGGAATTCTGGATCTGTTCTCAGTGAAGGCTGTGTACATGGGACACCCTGGCATTGATATACACACTGTGTGTGTCCAGAACAAACTTAGTAGCATGCTTCTATCGGAGACGGGGGTCACACTGCTCTATGGGCTTCAGACCACGGACAATAGATTACTGCACTTTGTGGCGCCAAAGCACACGGCTGAGATGCTTTTCAGTGGATTGCTGGAACTCACTACAGCTGTGAGAAAGATAAGGAGGTTCCCTGACCAACGACAGCAGTGGCTTCGGAAACAGTATGTCAGCCTCTATCAG tcttgaaagattaagtttattttgtagctttactcctgtttcatttacagaTTTATCATT---GAGTTACTGGATTCAGAAAATGTCATATTTGAAAGGTCCAAAGAGTGTGACCCCCATGGCTCTGCGGAGTCACAAAAGGCATTTGACCATGGGACAGAACTTATTCCATGGTATGTGCGGTCTATTCAAGCAGATGTGTACCAGTTTCTACTGCAGGGTGCAACAGTCATTCACTAT---CAGGACACACACCTTTCC---GGGTGTTTTCTCCAGTTGCAACCAGACAATAGCACATTGACATGGATGAAGTCTCCCACATCATCCCCAGCTGGCACCCAGCCCAAACTTGGAGTGCTCAGT---ATGACAGAAGGT---GAGTTTCCATCACCAGGCAATGCCGCTGGGGTGAGTAGCCTAGCAGAGGGAATTCAAGCTCTTTTCTCGGTAAAAGCCATTCATATGGGACACCATGGCTTTGACATACATACTGTATGTGTGCAGAATGAGCTTGTCAGCATGCTTCTATCTGAAACAGAGGTTACACTTCTCTATGGGCTTCAGGGTACTGACAACAGGCTTTTACATTTCATAGCCCCAAAGCACACAGCAGAAACACTATTTAGT---GTGCTGGATCTAACCACCACTGTCAGGAAGATCAGGAGGTTCCCTGACCAATGTTTACAGTGGCTTCGGAAGCAGTATGTT---ATCTACCAGgtaagaagacaatcagcctttagatgcacaaccacttatccctattagga Alignment from CESAR gTTTATAATTGGAGATTTGCTGGATTCAGAAAATGACATCTTTGAGAAGTCCAAAGAGTGTGACCCCCATGGATCCGAGGAGTCACAGAAAGCCTTTGACCATGGGACAGAGCTTATCCCATGGTACGTGCTGTCCATCCAAGCAGATGTGCACCAGTTCCTATTGCAGGGGGCCACAGTCATCCACTATGACCAGGACACACATCTCTCGGCCCGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACGTTGACCTGGATGAAACCTCCCACTGCCTCCCCAGCAGGCGCCAGACCCAAGCTCGGTGTGCTTAGTAACATGGCCGAGCCTGGCAAGTTCCCATCCCCAGGCAACGCC---GGGGTGAGCGGCCTGGCAGAGGGAATTCTGGATCTGTTCTCAGTGAAGGCTGTGTACATGGGACACCCTGGCATTGATATACACACTGTGTGTGTCCAGAACAAACTTAGTAGCATGCTTCTATCGGAGACGGGGGTCACACTGCTCTATGGGCTTCAGACCACGGACAATAGATTACTGCACTTTGTGGCGCCAAAGCACACGGCTGAGATGCTTTTCAGTGGATTGCTGGAACTCACTACAGCTGTGAGAAAGATAAGGAGGTTCCCTGACCAACGACAGCAGTGGCTTCGGAAACAGTATGTCAGCCTCTATCAG tcttgaaagattaagtttattttgtagctttactcctgtttcatttacagaTTTATCATT---GAGTTACTGGATTCAGAAAATGTCATATTTGAAAGGTCCAAAGAGTGTGACCCCCATGGCTCTGCGGAGTCACAAAAGGCATTTGACCATGGGACAGAACTTATTCCATGGTATGTGCGGTCTATTCAAGCAGATGTGTACCAGTTTCTACTGCAGGGTGCAACAGTCATTCACTAT---CAGGACACACACCTTTCCGGG---TGTTTTCTCCAGTTGCAACCAGACAATAGCACATTGACATGGATGAAGTCTCCCACATCATCCCCAGCTGGCACCCAGCCCAAACTTGGAGTGCTCAGT---ATGACAGAA---GGTGAGTTTCCATCACCAGGCAATGCCGCTGGGGTGAGTAGCCTAGCAGAGGGAATTCAAGCTCTTTTCTCGGTAAAAGCCATTCATATGGGACACCATGGCTTTGACATACATACTGTATGTGTGCAGAATGAGCTTGTCAGCATGCTTCTATCTGAAACAGAGGTTACACTTCTCTATGGGCTTCAGGGTACTGACAACAGGCTTTTACATTTCATAGCCCCAAAGCACACAGCAGAAACACTATTTAGT---GTGCTGGATCTAACCACCACTGTCAGGAAGATCAGGAGGTTCCCTGACCAATGTTTACAGTGGCTTCGGAAGCAGTATGTT---ATCTACCAGgtaagaagacaatcagcctttagatgcacaaccacttatccctattagga Alignment from Spaln_aa2Genome GTTTATAATTGGAGATTTGCTGGATTCAGAAAATGACATCTTTGAGAAGTCCAAAGAGTGTGACCCCCATGGATCCGAGGAGTCACAGAAAGCCTTTGACCATGGGACAGAGCTTATCCCATGGTACGTGCTGTCCATCCAAGCAGATGTGCACCAGTTCCTATTGCAGGGGGCCACAGTCATCCACTATGACCAGGACACACATCTCTCGGCCCGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACGTTGACCTGGATGAAACCTCCCACTGCCTCCCCAGCAGGCGCCAGACCCAAGCTCGGTGTGCTTAGTAACATGGCCGAGCCTGGCAAGTTCCCATCCCCAGGCAAC---GCCGGGGTGAGCGGCCTGGCAGAGGGAATTCTGGATCTGTTCTCAGTGAAGGCTGTGTACATGGGACACCCTGGCATTGATATACACACTGTGTGTGTCCAGAACAAACTTAGTAGCATGCTTCTATCGGAGACGGGGGTCACACTGCTCTATGGGCTTCAGACCACGGACAATAGATTACTGCACTTTGTGGCGCCAAAGCACACGGCTGAGATGCTTTTCAGTGGATTGCTGGAACTCACTACAGCTGTGAGAAAGATAAGGAGGTTCCCTGACCAACGACAGCAGTGGCTTCGGAAACAGTATGTCAGCCTCTATCAG tcttgaaagattaagtttattttgtagctttactcctgtttcatttacagATTTATCATT---GAGTTACTGGATTCAGAAAATGTCATATTTGAAAGGTCCAAAGAGTGTGACCCCCATGGCTCTGCGGAGTCACAAAAGGCATTTGACCATGGGACAGAACTTATTCCATGGTATGTGCGGTCTATTCAAGCAGATGTGTACCAGTTTCTACTGCAGGGTGCAACAGTCATTCACTAT---CAGGACACACACCTTTCCGGG---TGTTTTCTCCAGTTGCAACCAGACAATAGCACATTGACATGGATGAAGTCTCCCACATCATCCCCAGCTGGCACCCAGCCCAAACTTGGAGTGCTCAGT---ATGACAGAA---GGTGAGTTTCCATCACCAGGCAATGCCGCTGGGGTGAGTAGCCTAGCAGAGGGAATTCAAGCTCTTTTCTCGGTAAAAGCCATTCATATGGGACACCATGGCTTTGACATACATACTGTATGTGTGCAGAATGAGCTTGTCAGCATGCTTCTATCTGAAACAGAGGTTACACTTCTCTATGGGCTTCAGGGTACTGACAACAGGCTTTTACATTTCATAGCCCCAAAGCACACAGCAGAAACACTATTTAGT---GTGCTGGATCTAACCACCACTGTCAGGAAGATCAGGAGGTTCCCTGACCAATGTTTACAGTGGCTTCGGAAGCAGTATGTT---ATCTACCAGgtaagaagacaatcagcctttagatgcacaaccacttatccctattagga Alignment from Spaln_nt2Genome GTTTATAATTGGAGATTTGCTGGATTCAGAAAATGACATCTTTGAGAAGTCCAAAGAGTGTGACCCCCATGGATCCGAGGAGTCACAGAAAGCCTTTGACCATGGGACAGAGCTTATCCCATGGTACGTGCTGTCCATCCAAGCAGATGTGCACCAGTTCCTATTGCAGGGGGCCACAGTCATCCACTATGACCAGGACACACATCTCTCGGCCCGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACGTTGACCTGGATGAAACCTCCCACTGCCTCCCCAGCAGGCGCCAGACCCAAGCTCGGTGTGCTTAGTAACATGGCCGAGCCTGGCAAGTTCCCATCCCCAGGCAACGCCG---GGGTGAGCGGCCTGGCAGAGGGAATTCTGGATCTGTTCTCAGTGAAGGCTGTGTACATGGGACACCCTGGCATTGATATACACACTGTGTGTGTCCAGAACAAACTTAGTAGCATGCTTCTATCGGAGACGGGGGTCACACTGCTCTATGGGCTTCAGACCACGGACAATAGATTACTGCACTTTGTGGCGCCAAAGCACACGGCTGAGATGCTTTTCAGTGGATTGCTGGAACTCACTACAGCTGTGAGAAAGATAAGGAGGTTCCCTGACCAACGACAGCAGTGGCTTCGGAAACAGTATGTCAGCCTCTATCAG tcttgaaagattaagtttattttgtagctttactcctgtttcatttacagATTTATCATT---GAGTTACTGGATTCAGAAAATGTCATATTTGAAAGGTCCAAAGAGTGTGACCCCCATGGCTCTGCGGAGTCACAAAAGGCATTTGACCATGGGACAGAACTTATTCCATGGTATGTGCGGTCTATTCAAGCAGATGTGTACCAGTTTCTACTGCAGGGTGCAACAGTCATTCACTAT---CAGGACACACACCTTT---CCGGGTGTTTTCTCCAGTTGCAACCAGACAATAGCACATTGACATGGATGAAGTCTCCCACATCATCCCCAGCTGGCACCCAGCCCAAACTTGGAGTGCTCAGT---ATGACAGA---AGGTGAGTTTCCATCACCAGGCAATGCCGCTGGGGTGAGTAGCCTAGCAGAGGGAATTCAAGCTCTTTTCTCGGTAAAAGCCATTCATATGGGACACCATGGCTTTGACATACATACTGTATGTGTGCAGAATGAGCTTGTCAGCATGCTTCTATCTGAAACAGAGGTTACACTTCTCTATGGGCTTCAGGGTACTGACAACAGGCTTTTACATTTCATAGCCCCAAAGCACACAGCAGAAACACTATTTAGTG---TGCTGGATCTAACCACCACTGTCAGGAAGATCAGGAGGTTCCCTGACCAATGTTTACAGTGGCTTCGGAAGCAGTATGTTA---TCTACCAGgtaagaagacaatcagcctttagatgcacaaccacttatccctattagga Alignment from Pairagon GTTTATAATTGGAGATTTGCTGGATTCAGAAAATGACATCTTTGAGAAGTCCAAAGAGTGTGACCCCCATGGATCCGAGGAGTCACAGAAAGCCTTTGACCATGGGACAGAGCTTATCCCATGGTACGTGCTGTCCATCCAAGCAGATGTGCACCAGTTCCTATTGCAGGGGGCCACAGTCATCCACTATGACCAGGACACACATCTCTCGGCCCGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACGTTGACCTGGATGAAACCTCCCACTGCCTCCCCAGCAGGCGCCAGACCCAAGCTCGGTGTGCTTAGTAACATGGCCGAGCCTGGCA-------AGTTCCCATCCCCAGGCAA---CGCCGGGGTGAGCGGCCTGGCAGAGGGAATTCTGGATCTGTTCTCAGTGAAGGCTGTGTACATGGGACACCCTGGCATTGATATACACACTGTGTGTGTCCAGAACAAACTTAGTAGCATGCTTCTATCGGAGACGGGGGTCACACTGCTCTATGGGCTTCAGACCACGGACAATAGATTACTGCACTTTGTGGCGCCAAAGCACACGGCTGAGATGCTTTTCAGTGGATTGCTGGAACTCACTACAGCTGTGAGAAAGATAAGGAGGTTCCCTGACCAACGACAGCAGTGGCTTCGGAAACAGTATGTCAGCCTCTATCAG tcttgaaagattaagtttattttgtagctttactcctgtttcatttacagATTTATCATT---GAGTTACTGGATTCAGAAAATGTCATATTTGAAAGGTCCAAAGAGTGTGACCCCCATGGCTCTGCGGAGTCACAAAAGGCATTTGACCATGGGACAGAACTTATTCCATGGTATGTGCGGTCTATTCAAGCAGATGTGTACCAGTTTCTACTGCAGGGTGCAACAGTCATTCACTAT---CAGGACACACACCTTT---CCGGGTGTTTTCTCCAGTTGCAACCAGACAATAGCACATTGACATGGATGAAGTCTCCCACATCATCCCCAGCTGGCACCCAGCCCAAACTTGGAGTGCTCAGTA-------------TGACAGAAGGTGAGTTTCCATCACCAGGCAATGCCGCTGGGGTGAGTAGCCTAGCAGAGGGAATTCAAGCTCTTTTCTCGGTAAAAGCCATTCATATGGGACACCATGGCTTTGACATACATACTGTATGTGTGCAGAATGAGCTTGTCAGCATGCTTCTATCTGAAACAGAGGTTACACTTCTCTATGGGCTTCAGGGTACTGACAACAGGCTTTTACATTTCATAGCCCCAAAGCACACAGCAGAAACACTATTTAGTG---TGCTGGATCTAACCACCACTGTCAGGAAGATCAGGAGGTTCCCTGACCAATGTTTACAGTGGCTTCGGAAGCAGTATGTTA---TCTACCAGgtaagaagacaatcagcctttagatgcacaaccacttatccctattagga Alignment from Exonerate_protein2genome GTTTATAATTGGAGATTTGCTGGATTCAGAAAATGACATCTTTGAGAAGTCCAAAGAGTGTGACCCCCATGGATCCGAGGAGTCACAGAAAGCCTTTGACCATGGGACAGAGCTTATCCCATGGTACGTGCTGTCCATCCAAGCAGATGTGCACCAGTTCCTATTGCAGGGGGCCACAGTCATCCACTATGACCAGGACACACATCTCTCGGCCCGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACGTTGACCTGGATGAAACCTCCCACTGCCTCCCCAGCAGGCGCCAGACCCAAGCTCGGTGTGCTTAGTAACATGGCCGAGCCTGGCAAGTTCCCATCCCCAGGCAAC---GCCGGGGTGAGCGGCCTGGCAGAGGGAATTCTGGATCTGTTCTCAGTGAAGGCTGTGTACATGGGACACCCTGGCATTGATATACACACTGTGTGTGTCCAGAACAAACTTAGTAGCATGCTTCTATCGGAGACGGGGGTCACACTGCTCTATGGGCTTCAGACCACGGACAATAGATTACTGCACTTTGTGGCGCCAAAGCACACGGCTGAGATGCTTTTCAGTGGATTGCTGGAACTCACTACAGCTGTGAGAAAGATAAGGAGGTTCCCTGACCAACGACAGCAGTGGCTTCGGAAACAGTATGTCAGCCTCTATCAG tcttgaaagattaagtttattttgtagctttactcctgtttcatttacagATTTATCATT---GAGTTACTGGATTCAGAAAATGTCATATTTGAAAGGTCCAAAGAGTGTGACCCCCATGGCTCTGCGGAGTCACAAAAGGCATTTGACCATGGGACAGAACTTATTCCATGGTATGTGCGGTCTATTCAAGCAGATGTGTACCAGTTTCTACTGCAGGGTGCAACAGTCATTCACTAT---CAGGACACACACCTTTCCGGG---TGTTTTCTCCAGTTGCAACCAGACAATAGCACATTGACATGGATGAAGTCTCCCACATCATCCCCAGCTGGCACCCAGCCCAAACTTGGAGTGCTCAGT---ATGACAGAA---GGTGAGTTTCCATCACCAGGCAATGCCGCTGGGGTGAGTAGCCTAGCAGAGGGAATTCAAGCTCTTTTCTCGGTAAAAGCCATTCATATGGGACACCATGGCTTTGACATACATACTGTATGTGTGCAGAATGAGCTTGTCAGCATGCTTCTATCTGAAACAGAGGTTACACTTCTCTATGGGCTTCAGGGTACTGACAACAGGCTTTTACATTTCATAGCCCCAAAGCACACAGCAGAAACACTATTTAGT---GTGCTGGATCTAACCACCACTGTCAGGAAGATCAGGAGGTTCCCTGACCAATGTTTACAGTGGCTTCGGAAGCAGTATGTT---ATCTACCAGgtaagaagacaatcagcctttagatgcacaaccacttatccctattagga Alignment from Exonerate_coding2genome GTTTATAATTGGAGATTTGCTGGATTCAGAAAATGACATCTTTGAGAAGTCCAAAGAGTGTGACCCCCATGGATCCGAGGAGTCACAGAAAGCCTTTGACCATGGGACAGAGCTTATCCCATGGTACGTGCTGTCCATCCAAGCAGATGTGCACCAGTTCCTATTGCAGGGGGCCACAGTCATCCACTATGACCAGGACACACATCTCTCGGCCCGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACGTTGACCTGGATGAAACCTCCCACTGCCTCCCCAGCAGGCGCCAGACCCAAGCTCGGTGTGCTTAGTAACATGGCCGAGCCTGGCAAGTTCCCATCCCCAGGCAAC---GCCGGGGTGAGCGGCCTGGCAGAGGGAATTCTGGATCTGTTCTCAGTGAAGGCTGTGTACATGGGACACCCTGGCATTGATATACACACTGTGTGTGTCCAGAACAAACTTAGTAGCATGCTTCTATCGGAGACGGGGGTCACACTGCTCTATGGGCTTCAGACCACGGACAATAGATTACTGCACTTTGTGGCGCCAAAGCACACGGCTGAGATGCTTTTCAGTGGATTGCTGGAACTCACTACAGCTGTGAGAAAGATAAGGAGGTTCCCTGACCAACGACAGCAGTGGCTTCGGAAACAGTATGTCAGCCTCTATCAG tcttgaaagattaagtttattttgtagctttactcctgtttcatttacagATTTATCATT---GAGTTACTGGATTCAGAAAATGTCATATTTGAAAGGTCCAAAGAGTGTGACCCCCATGGCTCTGCGGAGTCACAAAAGGCATTTGACCATGGGACAGAACTTATTCCATGGTATGTGCGGTCTATTCAAGCAGATGTGTACCAGTTTCTACTGCAGGGTGCAACAGTCATTCACTAT---CAGGACACACACCTTTCCGGG---TGTTTTCTCCAGTTGCAACCAGACAATAGCACATTGACATGGATGAAGTCTCCCACATCATCCCCAGCTGGCACCCAGCCCAAACTTGGAGTGCTCAGT---ATGACAGAA---GGTGAGTTTCCATCACCAGGCAATGCCGCTGGGGTGAGTAGCCTAGCAGAGGGAATTCAAGCTCTTTTCTCGGTAAAAGCCATTCATATGGGACACCATGGCTTTGACATACATACTGTATGTGTGCAGAATGAGCTTGTCAGCATGCTTCTATCTGAAACAGAGGTTACACTTCTCTATGGGCTTCAGGGTACTGACAACAGGCTTTTACATTTCATAGCCCCAAAGCACACAGCAGAAACACTATTTAGT---GTGCTGGATCTAACCACCACTGTCAGGAAGATCAGGAGGTTCCCTGACCAATGTTTACAGTGGCTTCGGAAGCAGTATGTT---ATCTACCAGgtaagaagacaatcagcctttagatgcacaaccacttatccctattagga Alignment from GeneWise GTTTATAATTGGAGATTTGCTGGATTCAGAAAATGACATCTTTGAGAAGTCCAAAGAGTGTGACCCCCATGGATCCGAGGAGTCACAGAAAGCCTTTGACCATGGGACAGAGCTTATCCCATGGTACGTGCTGTCCATCCAAGCAGATGTGCACCAGTTCCTATTGCAGGGGGCCACAGTCATCCACTATGACCAGGACACACATCTCTCGGCCCGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACGTTGACCTGGATGAAACCTCCCACTGCCTCCCCAGCAGGCGCCAGACCCAAGCTCGGTGTGCTTAGTAACATGGCCGAGCCTGGCAAGTTCCCATCCCCAGGCAACGCC---GGGGTGAGCGGCCTGGCAGAGGGAATTCTGGATCTGTTCTCAGTGAAGGCTGTGTACATGGGACACCCTGGCATTGATATACACACTGTGTGTGTCCAGAACAAACTTAGTAGCATGCTTCTATCGGAGACGGGGGTCACACTGCTCTATGGGCTTCAGACCACGGACAATAGATTACTGCACTTTGTGGCGCCAAAGCACACGGCTGAGATGCTTTTCAGTGGATTGCTGGAACTCACTACAGCTGTGAGAAAGATAAGGAGGTTCCCTGACCAACGACAGCAGTGGCTTCGGAAACAGTATGTCAGCCTCTATCAG tcttgaaagattaagtttattttgtagctttactcctgtttcatttacagATTTATCATT---GAGTTACTGGATTCAGAAAATGTCATATTTGAAAGGTCCAAAGAGTGTGACCCCCATGGCTCTGCGGAGTCACAAAAGGCATTTGACCATGGGACAGAACTTATTCCATGGTATGTGCGGTCTATTCAAGCAGATGTGTACCAGTTTCTACTGCAGGGTGCAACAGTCATTCACTAT---CAGGACACACACCTTTCCGGG---TGTTTTCTCCAGTTGCAACCAGACAATAGCACATTGACATGGATGAAGTCTCCCACATCATCCCCAGCTGGCACCCAGCCCAAACTTGGAGTGCTCAGT---ATGACAGAA---GGTGAGTTTCCATCACCAGGCAATGCCGCTGGGGTGAGTAGCCTAGCAGAGGGAATTCAAGCTCTTTTCTCGGTAAAAGCCATTCATATGGGACACCATGGCTTTGACATACATACTGTATGTGTGCAGAATGAGCTTGTCAGCATGCTTCTATCTGAAACAGAGGTTACACTTCTCTATGGGCTTCAGGGTACTGACAACAGGCTTTTACATTTCATAGCCCCAAAGCACACAGCAGAAACACTATTTAGT---GTGCTGGATCTAACCACCACTGTCAGGAAGATCAGGAGGTTCCCTGACCAATGTTTACAGTGGCTTCGGAAGCAGTATGTT---ATCTACCAGgtaagaagacaatcagcctttagatgcacaaccacttatccctattagga #### Plce1_ID7634_17 --> 0 - 0 Original Alignment GAAGTGGTGGAAGCCATCGATCGCAGTGCCTTCATCACCTCAGACCTGCCAATCATCATATCCATTGAGAACCATTGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAG ccttataccaccaatagagatcagcccgttctttctttctttcttttcagGAAGTGGTGGAAGCCATTGATCGCAGTGCTTTTGTAACGTCAGACCTACCAATTATCATATCTATTGAAAACCAATGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAGgtgggtaaattttcaaggttgacttcaacattgaacagttgaagtgaaaa Alignment from CESAR GAAGTGGTGGAAGCCATCGATCGCAGTGCCTTCATCACCTCAGACCTGCCAATCATCATATCCATTGAGAACCATTGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAG ccttataccaccaatagagatcagcccgttctttctttctttcttttcagGAAGTGGTGGAAGCCATTGATCGCAGTGCTTTTGTAACGTCAGACCTACCAATTATCATATCTATTGAAAACCAATGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAGgtgggtaaattttcaaggttgacttcaacattgaacagttgaagtgaaaa Alignment from Spaln_aa2Genome GAAGTGGTGGAAGCCATCGATCGCAGTGCCTTCATCACCTCAGACCTGCCAATCATCATATCCATTGAGAACCATTGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAG ccttataccaccaatagagatcagcccgttctttctttctttcttttcagGAAGTGGTGGAAGCCATTGATCGCAGTGCTTTTGTAACGTCAGACCTACCAATTATCATATCTATTGAAAACCAATGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAGgtgggtaaattttcaaggttgacttcaacattgaacagttgaagtgaaaa Alignment from Spaln_nt2Genome GAAGTGGTGGAAGCCATCGATCGCAGTGCCTTCATCACCTCAGACCTGCCAATCATCATATCCATTGAGAACCATTGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAG ccttataccaccaatagagatcagcccgttctttctttctttcttttcagGAAGTGGTGGAAGCCATTGATCGCAGTGCTTTTGTAACGTCAGACCTACCAATTATCATATCTATTGAAAACCAATGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAGgtgggtaaattttcaaggttgacttcaacattgaacagttgaagtgaaaa Alignment from Pairagon GAAGTGGTGGAAGCCATCGATCGCAGTGCCTTCATCACCTCAGACCTGCCAATCATCATATCCATTGAGAACCATTGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAG ccttataccaccaatagagatcagcccgttctttctttctttcttttcagGAAGTGGTGGAAGCCATTGATCGCAGTGCTTTTGTAACGTCAGACCTACCAATTATCATATCTATTGAAAACCAATGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAGgtgggtaaattttcaaggttgacttcaacattgaacagttgaagtgaaaa Alignment from Exonerate_protein2genome GAAGTGGTGGAAGCCATCGATCGCAGTGCCTTCATCACCTCAGACCTGCCAATCATCATATCCATTGAGAACCATTGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAG ccttataccaccaatagagatcagcccgttctttctttctttcttttcagGAAGTGGTGGAAGCCATTGATCGCAGTGCTTTTGTAACGTCAGACCTACCAATTATCATATCTATTGAAAACCAATGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAGgtgggtaaattttcaaggttgacttcaacattgaacagttgaagtgaaaa Alignment from Exonerate_coding2genome GAAGTGGTGGAAGCCATCGATCGCAGTGCCTTCATCACCTCAGACCTGCCAATCATCATATCCATTGAGAACCATTGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAG ccttataccaccaatagagatcagcccgttctttctttctttcttttcagGAAGTGGTGGAAGCCATTGATCGCAGTGCTTTTGTAACGTCAGACCTACCAATTATCATATCTATTGAAAACCAATGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAGgtgggtaaattttcaaggttgacttcaacattgaacagttgaagtgaaaa Alignment from GeneWise GAAGTGGTGGAAGCCATCGATCGCAGTGCCTTCATCACCTCAGACCTGCCAATCATCATATCCATTGAGAACCATTGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAG ccttataccaccaatagagatcagcccgttctttctttctttcttttcagGAAGTGGTGGAAGCCATTGATCGCAGTGCTTTTGTAACGTCAGACCTACCAATTATCATATCTATTGAAAACCAATGTTCATTGCCTCAACAACGAAAAATGGCAGAAATTTTCAAGgtgggtaaattttcaaggttgacttcaacattgaacagttgaagtgaaaa #### Plce1_ID7637_20 --> 2 - 0 Original Alignment acAATATTCTGGAAGACAGACCTGAGAACAAATCATGCGCTGACAAGCTTCAGTTTGAGTACAATGAAGAGGTCCCCAAGAGGATAAAGAAAGCAGACAACTCCTCTGGCAATAAGGGAAAG gggggagtagtcagtttttatatcacaatggtctctcatgtcctttgtagatAATATTTTGGAAGATAAGCCTGACAATAAGTCTTGTGGTGATAAGCTCAAGTTTGAGTACAATGAAGAGGTCCCCAAGAGAGTCAAGAAAGCAGACAACTTCTCTGGCAATAAAGGTAAGgtatatggccacaatcactgtatgaagttcaggtggccggatgcccattt Alignment from CESAR acAATATTCTGGAAGACAGACCTGAGAACAAATCATGCGCTGACAAGCTTCAGTTTGAGTACAATGAAGAGGTCCCCAAGAGGATAAAGAAAGCAGACAACTCCTCTGGCAATAAGGGAAAG gggggagtagtcagtttttatatcacaatggtctctcatgtcctttgtagatAATATTTTGGAAGATAAGCCTGACAATAAGTCTTGTGGTGATAAGCTCAAGTTTGAGTACAATGAAGAGGTCCCCAAGAGAGTCAAGAAAGCAGACAACTTCTCTGGCAATAAAGGTAAGgtatatggccacaatcactgtatgaagttcaggtggccggatgcccattt Alignment from Spaln_aa2Genome ACAATATTCTGGAAGACAGACCTGAGAACAAATCATGCGCTGACAAGCTTCAGTTTGAGTACAATGAAGAGGTCCCCAAGAGGATAAAGAAAGCAGACAACTCCTCTGGCAATAAGGGAAAG gggggagtagtcagtttttatatcacaatggtctctcatgtcctttgtagATAATATTTTGGAAGATAAGCCTGACAATAAGTCTTGTGGTGATAAGCTCAAGTTTGAGTACAATGAAGAGGTCCCCAAGAGAGTCAAGAAAGCAGACAACTTCTCTGGCAATAAAGGTAAGgtatatggccacaatcactgtatgaagttcaggtggccggatgcccattt Alignment from Spaln_nt2Genome ACAATATTCTGGAAGACAGACCTGAGAACAAATCATGCGCTGACAAGCTTCAGTTTGAGTACAATGAAGAGGTCCCCAAGAGGATAAAGAAAGCAGACAACTCCTCTGGCAATAAGGGAAAG gggggagtagtcagtttttatatcacaatggtctctcatgtcctttgtagATAATATTTTGGAAGATAAGCCTGACAATAAGTCTTGTGGTGATAAGCTCAAGTTTGAGTACAATGAAGAGGTCCCCAAGAGAGTCAAGAAAGCAGACAACTTCTCTGGCAATAAAGGTAAGgtatatggccacaatcactgtatgaagttcaggtggccggatgcccattt Alignment from Pairagon ACAATATTCTGGAAGACAGACCTGAGAACAAATCATGCGCTGACAAGCTTCAGTTTGAGTACAATGAAGAGGTCCCCAAGAGGATAAAGAAAGCAGACAACTCCTCTGGCAATAAGGGAAAG gggggagtagtcagtttttatatcacaatggtctctcatgtcctttgtagATAATATTTTGGAAGATAAGCCTGACAATAAGTCTTGTGGTGATAAGCTCAAGTTTGAGTACAATGAAGAGGTCCCCAAGAGAGTCAAGAAAGCAGACAACTTCTCTGGCAATAAAGGTAAGgtatatggccacaatcactgtatgaagttcaggtggccggatgcccattt Alignment from Exonerate_protein2genome ACAATATTCTGGAAGACAGACCTGAGAACAAATCATGCGCTGACAAGCTTCAGTTTGAGTACAATGAAGAGGTCCCCAAGAGGATAAAGAAAGCAGACAACTCCTCTGGCAATAAGGGAAAG gggggagtagtcagtttttatatcacaatggtctctcatgtcctttgtagATAATATTTTGGAAGATAAGCCTGACAATAAGTCTTGTGGTGATAAGCTCAAGTTTGAGTACAATGAAGAGGTCCCCAAGAGAGTCAAGAAAGCAGACAACTTCTCTGGCAATAAAGGTAAGgtatatggccacaatcactgtatgaagttcaggtggccggatgcccattt Alignment from Exonerate_coding2genome ACAATATTCTGGAAGACAGACCTGAGAACAAATCATGCGCTGACAAGCTTCAGTTTGAGTACAATGAAGAGGTCCCCAAGAGGATAAAGAAAGCAGACAACTCCTCTGGCAATAAGGGAAAG gggggagtagtcagtttttatatcacaatggtctctcatgtcctttgtagATAATATTTTGGAAGATAAGCCTGACAATAAGTCTTGTGGTGATAAGCTCAAGTTTGAGTACAATGAAGAGGTCCCCAAGAGAGTCAAGAAAGCAGACAACTTCTCTGGCAATAAAGGTAAGgtatatggccacaatcactgtatgaagttcaggtggccggatgcccattt Alignment from GeneWise ACAATATTCTGGAAGACAGACCTGAGAACAAATCATGCGCTGACAAGCTTCAGTTTGAGTACAATGAAGAGGTCCCCAAGAGGATAAAGAAAGCAGACAACTCCTCTGGCAATAAGGGAAAG gggggagtagtcagtttttatatcacaatggtctctcatgtcctttgtagATAATATTTTGGAAGATAAGCCTGACAATAAGTCTTGTGGTGATAAGCTCAAGTTTGAGTACAATGAAGAGGTCCCCAAGAGAGTCAAGAAAGCAGACAACTTCTCTGGCAATAAAGGTAAGgtatatggccacaatcactgtatgaagttcaggtggccggatgcccattt #### Plce1_ID7645_27 --> 0 - 0 Original Alignment ATGTTTAATACTGAAGAGAGGAAATGTTCTCAGACTCACAAAGTCACAGTGCATGGTGTCCCAGGTCCAGAGCCCTTTGCTGTTTTCACTATAAACGAAGGCACCAAGGCAAAGCAGCTTCTCCAACAG ttaataaaaggttctgcgaagaccgtctattccacaatcttcttttacagATGTTTAATACTGAGGAGAGGAAATGTTCACAGACTCATCGAATCACCGTATATGGTGTTCCAGGTCCTGAACCCTTTGCTGTCTTCACTATCAATGAAGGCAGCAAGGCAAAGCAGCTTCTCCAACAGgtaagagaatactccacaattcatggttaatgatgggtaagttctagcat Alignment from CESAR ATGTTTAATACTGAAGAGAGGAAATGTTCTCAGACTCACAAAGTCACAGTGCATGGTGTCCCAGGTCCAGAGCCCTTTGCTGTTTTCACTATAAACGAAGGCACCAAGGCAAAGCAGCTTCTCCAACAG ttaataaaaggttctgcgaagaccgtctattccacaatcttcttttacagATGTTTAATACTGAGGAGAGGAAATGTTCACAGACTCATCGAATCACCGTATATGGTGTTCCAGGTCCTGAACCCTTTGCTGTCTTCACTATCAATGAAGGCAGCAAGGCAAAGCAGCTTCTCCAACAGgtaagagaatactccacaattcatggttaatgatgggtaagttctagcat Alignment from Spaln_aa2Genome ATGTTTAATACTGAAGAGAGGAAATGTTCTCAGACTCACAAAGTCACAGTGCATGGTGTCCCAGGTCCAGAGCCCTTTGCTGTTTTCACTATAAACGAAGGCACCAAGGCAAAGCAGCTTCTCCAACAG ttaataaaaggttctgcgaagaccgtctattccacaatcttcttttacagATGTTTAATACTGAGGAGAGGAAATGTTCACAGACTCATCGAATCACCGTATATGGTGTTCCAGGTCCTGAACCCTTTGCTGTCTTCACTATCAATGAAGGCAGCAAGGCAAAGCAGCTTCTCCAACAGgtaagagaatactccacaattcatggttaatgatgggtaagttctagcat Alignment from Spaln_nt2Genome ATGTTTAATACTGAAGAGAGGAAATGTTCTCAGACTCACAAAGTCACAGTGCATGGTGTCCCAGGTCCAGAGCCCTTTGCTGTTTTCACTATAAACGAAGGCACCAAGGCAAAGCAGCTTCTCCAACAG ttaataaaaggttctgcgaagaccgtctattccacaatcttcttttacagATGTTTAATACTGAGGAGAGGAAATGTTCACAGACTCATCGAATCACCGTATATGGTGTTCCAGGTCCTGAACCCTTTGCTGTCTTCACTATCAATGAAGGCAGCAAGGCAAAGCAGCTTCTCCAACAGgtaagagaatactccacaattcatggttaatgatgggtaagttctagcat Alignment from Pairagon ATGTTTAATACTGAAGAGAGGAAATGTTCTCAGACTCACAAAGTCACAGTGCATGGTGTCCCAGGTCCAGAGCCCTTTGCTGTTTTCACTATAAACGAAGGCACCAAGGCAAAGCAGCTTCTCCAACAG ttaataaaaggttctgcgaagaccgtctattccacaatcttcttttacagATGTTTAATACTGAGGAGAGGAAATGTTCACAGACTCATCGAATCACCGTATATGGTGTTCCAGGTCCTGAACCCTTTGCTGTCTTCACTATCAATGAAGGCAGCAAGGCAAAGCAGCTTCTCCAACAGgtaagagaatactccacaattcatggttaatgatgggtaagttctagcat Alignment from Exonerate_protein2genome ATGTTTAATACTGAAGAGAGGAAATGTTCTCAGACTCACAAAGTCACAGTGCATGGTGTCCCAGGTCCAGAGCCCTTTGCTGTTTTCACTATAAACGAAGGCACCAAGGCAAAGCAGCTTCTCCAACAG ttaataaaaggttctgcgaagaccgtctattccacaatcttcttttacagATGTTTAATACTGAGGAGAGGAAATGTTCACAGACTCATCGAATCACCGTATATGGTGTTCCAGGTCCTGAACCCTTTGCTGTCTTCACTATCAATGAAGGCAGCAAGGCAAAGCAGCTTCTCCAACAGgtaagagaatactccacaattcatggttaatgatgggtaagttctagcat Alignment from Exonerate_coding2genome ATGTTTAATACTGAAGAGAGGAAATGTTCTCAGACTCACAAAGTCACAGTGCATGGTGTCCCAGGTCCAGAGCCCTTTGCTGTTTTCACTATAAACGAAGGCACCAAGGCAAAGCAGCTTCTCCAACAG ttaataaaaggttctgcgaagaccgtctattccacaatcttcttttacagATGTTTAATACTGAGGAGAGGAAATGTTCACAGACTCATCGAATCACCGTATATGGTGTTCCAGGTCCTGAACCCTTTGCTGTCTTCACTATCAATGAAGGCAGCAAGGCAAAGCAGCTTCTCCAACAGgtaagagaatactccacaattcatggttaatgatgggtaagttctagcat Alignment from GeneWise ATGTTTAATACTGAAGAGAGGAAATGTTCTCAGACTCACAAAGTCACAGTGCATGGTGTCCCAGGTCCAGAGCCCTTTGCTGTTTTCACTATAAACGAAGGCACCAAGGCAAAGCAGCTTCTCCAACAG ttaataaaaggttctgcgaagaccgtctattccacaatcttcttttacagATGTTTAATACTGAGGAGAGGAAATGTTCACAGACTCATCGAATCACCGTATATGGTGTTCCAGGTCCTGAACCCTTTGCTGTCTTCACTATCAATGAAGGCAGCAAGGCAAAGCAGCTTCTCCAACAGgtaagagaatactccacaattcatggttaatgatgggtaagttctagcat #### Plgrkt_ID6260_2 --> 0 - 2 Original Alignment CTGGAAAGGCATCTGACCATGCAGAATGAGATGAGAGAAAGGCAAATGGCTATGCAGATCGCCTGGTCTCGGGAATTCCTCAAATATTTTGGAACGTTTTTTGGCATTGCAACC---ATCTCTTTAGCAACTgg gtccgagtgtattgtcctaaaagaattgcctttttaatcctgtgttgcagCTAGAAAGACATCTGACCATGCAGAATGAGATGCGCGAAAGGCAAACAGCCACACAGATTGCATGGTCCCGAGAATGTCTCAGACTTTTTGGGACAGTTCTTGGGATAGCAACTACC------CTAGCAACTgggtgactcatttttatctgcaatacttataacaaatttatgcaagtcccag Alignment from CESAR CTGGAAAGGCATCTGACCATGCAGAATGAGATGAGAGAAAGGCAAATGGCTATGCAGATCGCCTGGTCTCGGGAATTCCTCAAATATTTTGGAACGTTTTTTGGCATTGCAACCATCTCTTTAGCAACTgg gtccgagtgtattgtcctaaaagaattgcctttttaatcctgtgttgcagCTAGAAAGACATCTGACCATGCAGAATGAGATGCGCGAAAGGCAAACAGCCACACAGATTGCATGGTCCCGAGAATGTCTCAGACTTTTTGGGACAGTTCTTGGGATAGCAACT---ACCCTAGCAACTgggtgactcatttttatctgcaatacttataacaaatttatgcaagtcccag Alignment from Spaln_aa2Genome CTGGAAAGGCATCTGACCATGCAGAATGAGATGAGAGAAAGGCAAATGGCTATGCAGATCGCCTGGTCTCGGGAATTCCTCAAATATTTTGGAACGTTTTTTGGCATTGCAACCATCTCTTTAGCAACTGG gtccgagtgtattgtcctaaaagaattgcctttttaatcctgtgttgcagCTAGAAAGACATCTGACCATGCAGAATGAGATGCGCGAAAGGCAAACAGCCACACAGATTGCATGGTCCCGAGAATGTCTCAGACTTTTTGGGACAGTTCTTGGGATAGCAACT---ACCCTAGCAACTGGgtgactcatttttatctgcaatacttataacaaatttatgcaagtcccag Alignment from Spaln_nt2Genome CTGGAAAGGCATCTGACCATGCAGAATGAGATGAGAGAAAGGCAAATGGCTATGCAGATCGCCTGGTCTCGGGAATTCCTCAAATATTTTGGAACGTTTTTTGGCATTGCAACCATCTCTTTAGCAACTGG gtccgagtgtattgtcctaaaagaattgcctttttaatcctgtgttgcagCTAGAAAGACATCTGACCATGCAGAATGAGATGCGCGAAAGGCAAACAGCCACACAGATTGCATGGTCCCGAGAATGTCTCAGACTTTTTGGGACAGTTCTTGGGATAGCAACTA---CCCTAGCAACTGGgtgactcatttttatctgcaatacttataacaaatttatgcaagtcccag Alignment from Pairagon CTGGAAAGGCATCTGACCATGCAGAATGAGATGAGAGAAAGGCAAATGGCTATGCAGATCGCCTGGTCTCGGGAATTCCTCAAATATTTTGGAACGTTTTTTGGCATTGCAACCATCTCTTTAGCAACTGG gtccgagtgtattgtcctaaaagaattgcctttttaatcctgtgttgcagCTAGAAAGACATCTGACCATGCAGAATGAGATGCGCGAAAGGCAAACAGCCACACAGATTGCATGGTCCCGAGAATGTCTCAGACTTTTTGGGACAGTTCTTGGGATAGCAACTA---CCCTAGCAACTGGgtgactcatttttatctgcaatacttataacaaatttatgcaagtcccag Alignment from Exonerate_protein2genome CTGGAAAGGCATCTGACCATGCAGAATGAGATGAGAGAAAGGCAAATGGCTATGCAGATCGCCTGGTCTCGGGAATTCCTCAAATATTTTGGAACGTTTTTTGGCATTGCAACCATCTCTTTAGCAACTGG gtccgagtgtattgtcctaaaagaattgcctttttaatcctgtgttgcagCTAGAAAGACATCTGACCATGCAGAATGAGATGCGCGAAAGGCAAACAGCCACACAGATTGCATGGTCCCGAGAATGTCTCAGACTTTTTGGGACAGTTCTTGGGATAGCAACT---ACCCTAGCAACTGGgtgactcatttttatctgcaatacttataacaaatttatgcaagtcccag Alignment from Exonerate_coding2genome CTGGAAAGGCATCTGACCATGCAGAATGAGATGAGAGAAAGGCAAATGGCTATGCAGATCGCCTGGTCTCGGGAATTCCTCAAATATTTTGGAACGTTTTTTGGCATTGCAACCATCTCTTTAGCAACTGG gtccgagtgtattgtcctaaaagaattgcctttttaatcctgtgttgcagCTAGAAAGACATCTGACCATGCAGAATGAGATGCGCGAAAGGCAAACAGCCACACAGATTGCATGGTCCCGAGAATGTCTCAGACTTTTTGGGACAGTTCTTGGGATAGCAACT---ACCCTAGCAACTGGgtgactcatttttatctgcaatacttataacaaatttatgcaagtcccag Alignment from GeneWise CTGGAAAGGCATCTGACCATGCAGAATGAGATGAGAGAAAGGCAAATGGCTATGCAGATCGCCTGGTCTCGGGAATTCCTCAAATATTTTGGAACGTTTTTTGGCATTGCAACCATCTCTTTAGCAACTGG gtccgagtgtattgtcctaaaagaattgcctttttaatcctgtgttgcagCTAGAAAGACATCTGACCATGCAGAATGAGATGCGCGAAAGGCAAACAGCCACACAGATTGCATGGTCCCGAGAATGTCTCAGACTTTTTGGGACAGTTCTTGGGATAGCAACT---ACCCTAGCAACTGGgtgactcatttttatctgcaatacttataacaaatttatgcaagtcccag #### Pnlip_ID12746_5 --> 0 - 1 Original Alignment TCTGATCTGGGATACTCACTTAACAATGTCCACCTGATTGGCCAC---AGCCTGGGTTCCCACATTGCTGGGGAGGCTGGAAAGAGGACCTTTGGAGCCATTGGAAGGATCACAg ctgagggtgttgtcattgtcttactagctctgtatttcttaatattttagTCTGATCTGGGATACTTACTTAACAATGTCCAACTGATTGGTTACAACAGTCTAGGATCTCATATAGCGGGGGAAGCTGGGAGGAGGGCATTTGGAGCTATTGGACGGATCACAggtatggttgccattaattggttagcttatggcatttcccccaggttacct Alignment from CESAR TCTGATCTGGGATACTCACTTAACAATGTCCACCTGATTGGCCAC---AGCCTGGGTTCCCACATTGCTGGGGAGGCTGGAAAGAGGACCTTTGGAGCCATTGGAAGGATCACAg ctgagggtgttgtcattgtcttactagctctgtatttcttaatattttagTCTGATCTGGGATACTTACTTAACAATGTCCAACTGATTGGTTACAACAGTCTAGGATCTCATATAGCGGGGGAAGCTGGGAGGAGGGCATTTGGAGCTATTGGACGGATCACAggtatggttgccattaattggttagcttatggcatttcccccaggttacct Alignment from Spaln_aa2Genome TCTGATCTGGGATACTCACTTAACAATGTCCACCTGATTGGCCAC---AGCCTGGGTTCCCACATTGCTGGGGAGGCTGGAAAGAGGACCTTTGGAGCCATTGGAAGGATCACAG ctgagggtgttgtcattgtcttactagctctgtatttcttaatattttagTCTGATCTGGGATACTTACTTAACAATGTCCAACTGATTGGTTACAACAGTCTAGGATCTCATATAGCGGGGGAAGCTGGGAGGAGGGCATTTGGAGCTATTGGACGGATCACAGgtatggttgccattaattggttagcttatggcatttcccccaggttacct Alignment from Spaln_nt2Genome TCTGATCTGGGATACTCACTTAACAATGTCCACCTGATTGG---CCACAGCCTGGGTTCCCACATTGCTGGGGAGGCTGGAAAGAGGACCTTTGGAGCCATTGGAAGGATCACAG ctgagggtgttgtcattgtcttactagctctgtatttcttaatattttagTCTGATCTGGGATACTTACTTAACAATGTCCAACTGATTGGTTACAACAGTCTAGGATCTCATATAGCGGGGGAAGCTGGGAGGAGGGCATTTGGAGCTATTGGACGGATCACAGgtatggttgccattaattggttagcttatggcatttcccccaggttacct Alignment from Pairagon TCTGATCTGGGATACTCACTTAACAATGTCCACCTGATTGG---CCACAGCCTGGGTTCCCACATTGCTGGGGAGGCTGGAAAGAGGACCTTTGGAGCCATTGGAAGGATCACAG ctgagggtgttgtcattgtcttactagctctgtatttcttaatattttagTCTGATCTGGGATACTTACTTAACAATGTCCAACTGATTGGTTACAACAGTCTAGGATCTCATATAGCGGGGGAAGCTGGGAGGAGGGCATTTGGAGCTATTGGACGGATCACAGgtatggttgccattaattggttagcttatggcatttcccccaggttacct Alignment from Exonerate_protein2genome TCTGATCTGGGATACTCACTTAACAATGTCCACCTGATTGGCCAC---AGCCTGGGTTCCCACATTGCTGGGGAGGCTGGAAAGAGGACCTTTGGAGCCATTGGAAGGATCACAG ctgagggtgttgtcattgtcttactagctctgtatttcttaatattttagTCTGATCTGGGATACTTACTTAACAATGTCCAACTGATTGGTTACAACAGTCTAGGATCTCATATAGCGGGGGAAGCTGGGAGGAGGGCATTTGGAGCTATTGGACGGATCACAGgtatggttgccattaattggttagcttatggcatttcccccaggttacct Alignment from Exonerate_coding2genome TCTGATCTGGGATACTCACTTAACAATGTCCACCTGATTGGCCAC---AGCCTGGGTTCCCACATTGCTGGGGAGGCTGGAAAGAGGACCTTTGGAGCCATTGGAAGGATCACAG ctgagggtgttgtcattgtcttactagctctgtatttcttaatattttagTCTGATCTGGGATACTTACTTAACAATGTCCAACTGATTGGTTACAACAGTCTAGGATCTCATATAGCGGGGGAAGCTGGGAGGAGGGCATTTGGAGCTATTGGACGGATCACAGgtatggttgccattaattggttagcttatggcatttcccccaggttacct Alignment from GeneWise TCTGATCTGGGATACTCACTTAACAATGTCCACCTGATTGGCCAC---AGCCTGGGTTCCCACATTGCTGGGGAGGCTGGAAAGAGGACCTTTGGAGCCATTGGAAGGATCACAG ctgagggtgttgtcattgtcttactagctctgtatttcttaatattttagTCTGATCTGGGATACTTACTTAACAATGTCCAACTGATTGGTTACAACAGTCTAGGATCTCATATAGCGGGGGAAGCTGGGAGGAGGGCATTTGGAGCTATTGGACGGATCACAGgtatggttgccattaattggttagcttatggcatttcccccaggttacct #### Pnliprp1_ID12768_5 --> 0 - 1 Original Alignment AGAAACTTCAACTACTCTGCTTCCAAAGTCCACCTCATTGGCCACAGCCTAGGAGCCCACGTGGCAGGGGAAGCAGGAAGTCGGACTCCAGGTCTTGGCAGGATTACAg agagagttcatatgggggtgggtgtatgaaatgctgtcttttgtctttagAGGAACCTGAACTATTTTGCTTCCAAAATCCAC---CTTGGCCACAGTCTAGGTGCTCATGTTGCAGGTGAAGCAGGAAGTCGGAATTCAGGACTTAGTAGGATTACAggtaggaattacatttttagatgacaaaggagaatatcgggatgtgttcat Alignment from CESAR AGAAACTTCAACTACTCTGCTTCCAAAGTCCACCTCATTGGCCACAGCCTAGGAGCCCACGTGGCAGGGGAAGCAGGAAGTCGGACTCCAGGTCTTGGCAGGATTACAg agagagttcatatgggggtgggtgtatgaaatgctgtcttttgtctttagAGGAACCTGAACTATTTTGCTTCCAAAATCCACCTT---GGCCACAGTCTAGGTGCTCATGTTGCAGGTGAAGCAGGAAGTCGGAATTCAGGACTTAGTAGGATTACAggtaggaattacatttttagatgacaaaggagaatatcgggatgtgttcat Alignment from Spaln_aa2Genome AGAAACTTCAACTACTCTGCTTCCAAAGTCCACCTCATTGGCCACAGCCTAGGAGCCCACGTGGCAGGGGAAGCAGGAAGTCGGACTCCAGGTCTTGGCAGGATTACAG agagagttcatatgggggtgggtgtatgaaatgctgtcttttgtctttagAGGAACCTGAACTATTTTGCTTCCAAAATCCACCTT---GGCCACAGTCTAGGTGCTCATGTTGCAGGTGAAGCAGGAAGTCGGAATTCAGGACTTAGTAGGATTACAGgtaggaattacatttttagatgacaaaggagaatatcgggatgtgttcat Alignment from Spaln_nt2Genome AGAAACTTCAACTACTCTGCTTCCAAAGTCCACCTCATTGGCCACAGCCTAGGAGCCCACGTGGCAGGGGAAGCAGGAAGTCGGACTCCAGGTCTTGGCAGGATTACAG agagagttcatatgggggtgggtgtatgaaatgctgtcttttgtctttagAGGAACCTGAACTATTTTGCTTCCAAAAT---CCACCTTGGCCACAGTCTAGGTGCTCATGTTGCAGGTGAAGCAGGAAGTCGGAATTCAGGACTTAGTAGGATTACAGgtaggaattacatttttagatgacaaaggagaatatcgggatgtgttcat Alignment from Pairagon AGAAACTTCAACTACTCTGCTTCCAAAGTCCACCTCATTGGCCACAGCCTAGGAGCCCACGTGGCAGGGGAAGCAGGAAGTCGGACTCCAGGTCTTGGCAGGATTACAG agagagttcatatgggggtgggtgtatgaaatgctgtcttttgtctttagAGGAACCTGAACTATTTTGCTTCCAAAATCCACC---TTGGCCACAGTCTAGGTGCTCATGTTGCAGGTGAAGCAGGAAGTCGGAATTCAGGACTTAGTAGGATTACAGgtaggaattacatttttagatgacaaaggagaatatcgggatgtgttcat Alignment from Exonerate_protein2genome AGAAACTTCAACTACTCTGCTTCCAAAGTCCACCTCATTGGCCACAGCCTAGGAGCCCACGTGGCAGGGGAAGCAGGAAGTCGGACTCCAGGTCTTGGCAGGATTACAG agagagttcatatgggggtgggtgtatgaaatgctgtcttttgtctttagAGGAACCTGAACTATTTTGCTTCCAAAATCCACCTT---GGCCACAGTCTAGGTGCTCATGTTGCAGGTGAAGCAGGAAGTCGGAATTCAGGACTTAGTAGGATTACAGgtaggaattacatttttagatgacaaaggagaatatcgggatgtgttcat Alignment from Exonerate_coding2genome AGAAACTTCAACTACTCTGCTTCCAAAGTCCACCTCATTGGCCACAGCCTAGGAGCCCACGTGGCAGGGGAAGCAGGAAGTCGGACTCCAGGTCTTGGCAGGATTACAG agagagttcatatgggggtgggtgtatgaaatgctgtcttttgtctttagAGGAACCTGAACTATTTTGCTTCCAAAATCCACCTT---GGCCACAGTCTAGGTGCTCATGTTGCAGGTGAAGCAGGAAGTCGGAATTCAGGACTTAGTAGGATTACAGgtaggaattacatttttagatgacaaaggagaatatcgggatgtgttcat Alignment from GeneWise AGAAACTTCAACTACTCTGCTTCCAAAGTCCACCTCATTGGCCACAGCCTAGGAGCCCACGTGGCAGGGGAAGCAGGAAGTCGGACTCCAGGTCTTGGCAGGATTACAG agagagttcatatgggggtgggtgtatgaaatgctgtcttttgtctttagAGGAACCTGAACTATTTTGCTTCCAAAATCCACCTT---GGCCACAGTCTAGGTGCTCATGTTGCAGGTGAAGCAGGAAGTCGGAATTCAGGACTTAGTAGGATTACAGgtaggaattacatttttagatgacaaaggagaatatcgggatgtgttcat #### Pnliprp1_ID12769_6 --> 2 - 1 Original Alignment gaCTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTCGACCCCTCGGATGCTGACTTTGTTGATGTGATTCACACAGATGCAGCTCCCTTGATCCCATTCTTGg aactctgtactctcatgctgctacatttgctgcttttcctcaatgaccaggaCTGGATTCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGATTCGGCTGGACCCCTCAGATGCTGACTTTGTCGATGTGATTCACACAGATGCAGCTGCCTTGGTCCCATCCTTGggtgagtcctggtaccctgtaatcatctaccaggtattgcaagacctaacc Alignment from CESAR gaCTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTCGACCCCTCGGATGCTGACTTTGTTGATGTGATTCACACAGATGCAGCTCCCTTGATCCCATTCTTGg aactctgtactctcatgctgctacatttgctgcttttcctcaatgaccaggaCTGGATTCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGATTCGGCTGGACCCCTCAGATGCTGACTTTGTCGATGTGATTCACACAGATGCAGCTGCCTTGGTCCCATCCTTGggtgagtcctggtaccctgtaatcatctaccaggtattgcaagacctaacc Alignment from Spaln_aa2Genome GACTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTCGACCCCTCGGATGCTGACTTTGTTGATGTGATTCACACAGATGCAGCTCCCTTGATCCCATTCTTGG aactctgtactctcatgctgctacatttgctgcttttcctcaatgaccagGACTGGATTCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGATTCGGCTGGACCCCTCAGATGCTGACTTTGTCGATGTGATTCACACAGATGCAGCTGCCTTGGTCCCATCCTTGGgtgagtcctggtaccctgtaatcatctaccaggtattgcaagacctaacc Alignment from Spaln_nt2Genome GACTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTCGACCCCTCGGATGCTGACTTTGTTGATGTGATTCACACAGATGCAGCTCCCTTGATCCCATTCTTGG aactctgtactctcatgctgctacatttgctgcttttcctcaatgaccagGACTGGATTCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGATTCGGCTGGACCCCTCAGATGCTGACTTTGTCGATGTGATTCACACAGATGCAGCTGCCTTGGTCCCATCCTTGGgtgagtcctggtaccctgtaatcatctaccaggtattgcaagacctaacc Alignment from Pairagon GACTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTCGACCCCTCGGATGCTGACTTTGTTGATGTGATTCACACAGATGCAGCTCCCTTGATCCCATTCTTGG aactctgtactctcatgctgctacatttgctgcttttcctcaatgaccagGACTGGATTCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGATTCGGCTGGACCCCTCAGATGCTGACTTTGTCGATGTGATTCACACAGATGCAGCTGCCTTGGTCCCATCCTTGGgtgagtcctggtaccctgtaatcatctaccaggtattgcaagacctaacc Alignment from Exonerate_protein2genome GACTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTCGACCCCTCGGATGCTGACTTTGTTGATGTGATTCACACAGATGCAGCTCCCTTGATCCCATTCTTGG aactctgtactctcatgctgctacatttgctgcttttcctcaatgaccagGACTGGATTCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGATTCGGCTGGACCCCTCAGATGCTGACTTTGTCGATGTGATTCACACAGATGCAGCTGCCTTGGTCCCATCCTTGGgtgagtcctggtaccctgtaatcatctaccaggtattgcaagacctaacc Alignment from Exonerate_coding2genome GACTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTCGACCCCTCGGATGCTGACTTTGTTGATGTGATTCACACAGATGCAGCTCCCTTGATCCCATTCTTGG aactctgtactctcatgctgctacatttgctgcttttcctcaatgaccagGACTGGATTCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGATTCGGCTGGACCCCTCAGATGCTGACTTTGTCGATGTGATTCACACAGATGCAGCTGCCTTGGTCCCATCCTTGGgtgagtcctggtaccctgtaatcatctaccaggtattgcaagacctaacc Alignment from GeneWise GACTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTCGACCCCTCGGATGCTGACTTTGTTGATGTGATTCACACAGATGCAGCTCCCTTGATCCCATTCTTGG aactctgtactctcatgctgctacatttgctgcttttcctcaatgaccagGACTGGATTCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGATTCGGCTGGACCCCTCAGATGCTGACTTTGTCGATGTGATTCACACAGATGCAGCTGCCTTGGTCCCATCCTTGGgtgagtcctggtaccctgtaatcatctaccaggtattgcaagacctaacc #### Pnliprp1_ID12771_8 --> 2 - 0 Original Alignment gaACCCGGGACTTTGTGGCTTGTAACCACCTGAGAAGCTACAAGTACTACTTAGAGAGCATCCTTAACCCAGATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCT ccacagcctgacatgaattagccactggcctgccgtcttgggctctgcagggACACGGGACTTTGTGGCCTGTAACCACCTGAGAAGCTACAAGTACTATTTGGAGAGCATTCTTAACCCAGATGATTTTGCAGCATATCCCTGTGCCTCCTACTGGGACTTTGAATCTgtgagtatttactttaggtaaaattgaggaaacccgcacttggacacttc Alignment from CESAR gaACCCGGGACTTTGTGGCTTGTAACCACCTGAGAAGCTACAAGTACTACTTAGAGAGCATCCTTAACCCAGATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCT ccacagcctgacatgaattagccactggcctgccgtcttgggctctgcagggACACGGGACTTTGTGGCCTGTAACCACCTGAGAAGCTACAAGTACTATTTGGAGAGCATTCTTAACCCAGATGATTTTGCAGCATATCCCTGTGCCTCCTACTGGGACTTTGAATCTgtgagtatttactttaggtaaaattgaggaaacccgcacttggacacttc Alignment from Spaln_aa2Genome GAACCCGGGACTTTGTGGCTTGTAACCACCTGAGAAGCTACAAGTACTACTTAGAGAGCATCCTTAACCCAGATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCT ccacagcctgacatgaattagccactggcctgccgtcttgggctctgcagGGACACGGGACTTTGTGGCCTGTAACCACCTGAGAAGCTACAAGTACTATTTGGAGAGCATTCTTAACCCAGATGATTTTGCAGCATATCCCTGTGCCTCCTACTGGGACTTTGAATCTgtgagtatttactttaggtaaaattgaggaaacccgcacttggacacttc Alignment from Spaln_nt2Genome GAACCCGGGACTTTGTGGCTTGTAACCACCTGAGAAGCTACAAGTACTACTTAGAGAGCATCCTTAACCCAGATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCT ccacagcctgacatgaattagccactggcctgccgtcttgggctctgcagGGACACGGGACTTTGTGGCCTGTAACCACCTGAGAAGCTACAAGTACTATTTGGAGAGCATTCTTAACCCAGATGATTTTGCAGCATATCCCTGTGCCTCCTACTGGGACTTTGAATCTgtgagtatttactttaggtaaaattgaggaaacccgcacttggacacttc Alignment from Pairagon GAACCCGGGACTTTGTGGCTTGTAACCACCTGAGAAGCTACAAGTACTACTTAGAGAGCATCCTTAACCCAGATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCT ccacagcctgacatgaattagccactggcctgccgtcttgggctctgcagGGACACGGGACTTTGTGGCCTGTAACCACCTGAGAAGCTACAAGTACTATTTGGAGAGCATTCTTAACCCAGATGATTTTGCAGCATATCCCTGTGCCTCCTACTGGGACTTTGAATCTgtgagtatttactttaggtaaaattgaggaaacccgcacttggacacttc Alignment from Exonerate_protein2genome GAACCCGGGACTTTGTGGCTTGTAACCACCTGAGAAGCTACAAGTACTACTTAGAGAGCATCCTTAACCCAGATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCT ccacagcctgacatgaattagccactggcctgccgtcttgggctctgcagGGACACGGGACTTTGTGGCCTGTAACCACCTGAGAAGCTACAAGTACTATTTGGAGAGCATTCTTAACCCAGATGATTTTGCAGCATATCCCTGTGCCTCCTACTGGGACTTTGAATCTgtgagtatttactttaggtaaaattgaggaaacccgcacttggacacttc Alignment from Exonerate_coding2genome GAACCCGGGACTTTGTGGCTTGTAACCACCTGAGAAGCTACAAGTACTACTTAGAGAGCATCCTTAACCCAGATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCT ccacagcctgacatgaattagccactggcctgccgtcttgggctctgcagGGACACGGGACTTTGTGGCCTGTAACCACCTGAGAAGCTACAAGTACTATTTGGAGAGCATTCTTAACCCAGATGATTTTGCAGCATATCCCTGTGCCTCCTACTGGGACTTTGAATCTgtgagtatttactttaggtaaaattgaggaaacccgcacttggacacttc Alignment from GeneWise GAACCCGGGACTTTGTGGCTTGTAACCACCTGAGAAGCTACAAGTACTACTTAGAGAGCATCCTTAACCCAGATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCT ccacagcctgacatgaattagccactggcctgccgtcttgggctctgcagGGACACGGGACTTTGTGGCCTGTAACCACCTGAGAAGCTACAAGTACTATTTGGAGAGCATTCTTAACCCAGATGATTTTGCAGCATATCCCTGTGCCTCCTACTGGGACTTTGAATCTgtgagtatttactttaggtaaaattgaggaaacccgcacttggacacttc #### Pnliprp2_ID12780_3 --> 0 - 0 Original Alignment ATAATCTCTGCCACCGACCCAGCCACCATCAATGCTTCCAACTTCCAACTGGACCGCAAGACACGTTTCATTATCCATGGATTCATAGACAAGGGAGAAGAAGGCTGGTTGCTGGACATGTGCAAG tgatggtacaactcaatcagagtgacagcatgagcccttcttcccaccagATAATTTCTGCCACAGACCCAGCAACTGTCAATACTTCTAACTTTCAACTGGACCATAAGACACGTTTCATTATACATGGATTCATAGGCAAGGGTGAGGAGGGCTGGTTACTGGAAATGTGTAAAgtgagtgtttggaataagcatctgtccttagctccttgaaagcatcaact Alignment from CESAR ATAATCTCTGCCACCGACCCAGCCACCATCAATGCTTCCAACTTCCAACTGGACCGCAAGACACGTTTCATTATCCATGGATTCATAGACAAGGGAGAAGAAGGCTGGTTGCTGGACATGTGCAAG tgatggtacaactcaatcagagtgacagcatgagcccttcttcccaccagATAATTTCTGCCACAGACCCAGCAACTGTCAATACTTCTAACTTTCAACTGGACCATAAGACACGTTTCATTATACATGGATTCATAGGCAAGGGTGAGGAGGGCTGGTTACTGGAAATGTGTAAAgtgagtgtttggaataagcatctgtccttagctccttgaaagcatcaact Alignment from Spaln_aa2Genome ATAATCTCTGCCACCGACCCAGCCACCATCAATGCTTCCAACTTCCAACTGGACCGCAAGACACGTTTCATTATCCATGGATTCATAGACAAGGGAGAAGAAGGCTGGTTGCTGGACATGTGCAAG tgatggtacaactcaatcagagtgacagcatgagcccttcttcccaccagATAATTTCTGCCACAGACCCAGCAACTGTCAATACTTCTAACTTTCAACTGGACCATAAGACACGTTTCATTATACATGGATTCATAGGCAAGGGTGAGGAGGGCTGGTTACTGGAAATGTGTAAAgtgagtgtttggaataagcatctgtccttagctccttgaaagcatcaact Alignment from Spaln_nt2Genome ATAATCTCTGCCACCGACCCAGCCACCATCAATGCTTCCAACTTCCAACTGGACCGCAAGACACGTTTCATTATCCATGGATTCATAGACAAGGGAGAAGAAGGCTGGTTGCTGGACATGTGCAAG tgatggtacaactcaatcagagtgacagcatgagcccttcttcccaccagATAATTTCTGCCACAGACCCAGCAACTGTCAATACTTCTAACTTTCAACTGGACCATAAGACACGTTTCATTATACATGGATTCATAGGCAAGGGTGAGGAGGGCTGGTTACTGGAAATGTGTAAAgtgagtgtttggaataagcatctgtccttagctccttgaaagcatcaact Alignment from Pairagon ATAATCTCTGCCACCGACCCAGCCACCATCAATGCTTCCAACTTCCAACTGGACCGCAAGACACGTTTCATTATCCATGGATTCATAGACAAGGGAGAAGAAGGCTGGTTGCTGGACATGTGCAAG tgatggtacaactcaatcagagtgacagcatgagcccttcttcccaccagATAATTTCTGCCACAGACCCAGCAACTGTCAATACTTCTAACTTTCAACTGGACCATAAGACACGTTTCATTATACATGGATTCATAGGCAAGGGTGAGGAGGGCTGGTTACTGGAAATGTGTAAAgtgagtgtttggaataagcatctgtccttagctccttgaaagcatcaact Alignment from Exonerate_protein2genome ATAATCTCTGCCACCGACCCAGCCACCATCAATGCTTCCAACTTCCAACTGGACCGCAAGACACGTTTCATTATCCATGGATTCATAGACAAGGGAGAAGAAGGCTGGTTGCTGGACATGTGCAAG tgatggtacaactcaatcagagtgacagcatgagcccttcttcccaccagATAATTTCTGCCACAGACCCAGCAACTGTCAATACTTCTAACTTTCAACTGGACCATAAGACACGTTTCATTATACATGGATTCATAGGCAAGGGTGAGGAGGGCTGGTTACTGGAAATGTGTAAAgtgagtgtttggaataagcatctgtccttagctccttgaaagcatcaact Alignment from Exonerate_coding2genome ATAATCTCTGCCACCGACCCAGCCACCATCAATGCTTCCAACTTCCAACTGGACCGCAAGACACGTTTCATTATCCATGGATTCATAGACAAGGGAGAAGAAGGCTGGTTGCTGGACATGTGCAAG tgatggtacaactcaatcagagtgacagcatgagcccttcttcccaccagATAATTTCTGCCACAGACCCAGCAACTGTCAATACTTCTAACTTTCAACTGGACCATAAGACACGTTTCATTATACATGGATTCATAGGCAAGGGTGAGGAGGGCTGGTTACTGGAAATGTGTAAAgtgagtgtttggaataagcatctgtccttagctccttgaaagcatcaact Alignment from GeneWise ATAATCTCTGCCACCGACCCAGCCACCATCAATGCTTCCAACTTCCAACTGGACCGCAAGACACGTTTCATTATCCATGGATTCATAGACAAGGGAGAAGAAGGCTGGTTGCTGGACATGTGCAAG tgatggtacaactcaatcagagtgacagcatgagcccttcttcccaccagATAATTTCTGCCACAGACCCAGCAACTGTCAATACTTCTAACTTTCAACTGGACCATAAGACACGTTTCATTATACATGGATTCATAGGCAAGGGTGAGGAGGGCTGGTTACTGGAAATGTGTAAAgtgagtgtttggaataagcatctgtccttagctccttgaaagcatcaact #### Pnliprp2_ID12782_5 --> 0 - 1 Original Alignment ACAGAGATGGGGTACAGCCCAGAGAACGTGCACCTCATCGGCCACAGCTTGGGCTCACATGTGGCTGGGGAAGCAGGCAGGAGGCTGGAGGGCCATGTGGGCAGGATCACAg tataacctaacatcattggactcaatgttgccttgcctttgggtctctagACAGAGACAGGGCATAGCCCAGAAAAT---GATCTCATTGGCCACTGTTTGGGCTCACATGTGGCTGGGGAAGCAGGAAGGAGGCTGGAGGGCCATGTGGGCAGGATAACAggtgagtgtcattttgactaatacgcaagcaggggtgggcagagtacagag Alignment from CESAR ACAGAGATGGGGTACAGCCCAGAGAACGTGCACCTCATCGGCCACAGCTTGGGCTCACATGTGGCTGGGGAAGCAGGCAGGAGGCTGGAGGGCCATGTGGGCAGGATCACAg tataacctaacatcattggactcaatgttgccttgcctttgggtctctagACAGAGACAGGGCATAGCCCAGAAAAT---GATCTCATTGGCCACTGTTTGGGCTCACATGTGGCTGGGGAAGCAGGAAGGAGGCTGGAGGGCCATGTGGGCAGGATAACAggtgagtgtcattttgactaatacgcaagcaggggtgggcagagtacagag Alignment from Spaln_aa2Genome ACAGAGATGGGGTACAGCCCAGAGAACGTGCACCTCATCGGCCACAGCTTGGGCTCACATGTGGCTGGGGAAGCAGGCAGGAGGCTGGAGGGCCATGTGGGCAGGATCACAG tataacctaacatcattggactcaatgttgccttgcctttgggtctctagACAGAGACAGGGCATAGCCCAGAAAAT---GATCTCATTGGCCACTGTTTGGGCTCACATGTGGCTGGGGAAGCAGGAAGGAGGCTGGAGGGCCATGTGGGCAGGATAACAGgtgagtgtcattttgactaatacgcaagcaggggtgggcagagtacagag Alignment from Spaln_nt2Genome ACAGAGATGGGGTACAGCCCAGAGAACGTGCACCTCATCGGCCACAGCTTGGGCTCACATGTGGCTGGGGAAGCAGGCAGGAGGCTGGAGGGCCATGTGGGCAGGATCACAG tataacctaacatcattggactcaatgttgccttgcctttgggtctctagACAGAGACAGGGCATAGCCCAGAAAATG---ATCTCATTGGCCACTGTTTGGGCTCACATGTGGCTGGGGAAGCAGGAAGGAGGCTGGAGGGCCATGTGGGCAGGATAACAGgtgagtgtcattttgactaatacgcaagcaggggtgggcagagtacagag Alignment from Pairagon ACAGAGATGGGGTACAGCCCAGAGAACGTGCACCTCATCGGCCACAGCTTGGGCTCACATGTGGCTGGGGAAGCAGGCAGGAGGCTGGAGGGCCATGTGGGCAGGATCACAG tataacctaacatcattggactcaatgttgccttgcctttgggtctctagACAGAGACAGGGCATAGCCCAGAAAATG---ATCTCATTGGCCACTGTTTGGGCTCACATGTGGCTGGGGAAGCAGGAAGGAGGCTGGAGGGCCATGTGGGCAGGATAACAGgtgagtgtcattttgactaatacgcaagcaggggtgggcagagtacagag Alignment from Exonerate_protein2genome ACAGAGATGGGGTACAGCCCAGAGAACGTGCACCTCATCGGCCACAGCTTGGGCTCACATGTGGCTGGGGAAGCAGGCAGGAGGCTGGAGGGCCATGTGGGCAGGATCACAG tataacctaacatcattggactcaatgttgccttgcctttgggtctctagACAGAGACAGGGCATAGCCCAGAAAAT---GATCTCATTGGCCACTGTTTGGGCTCACATGTGGCTGGGGAAGCAGGAAGGAGGCTGGAGGGCCATGTGGGCAGGATAACAGgtgagtgtcattttgactaatacgcaagcaggggtgggcagagtacagag Alignment from Exonerate_coding2genome ACAGAGATGGGGTACAGCCCAGAGAACGTGCACCTCATCGGCCACAGCTTGGGCTCACATGTGGCTGGGGAAGCAGGCAGGAGGCTGGAGGGCCATGTGGGCAGGATCACAG tataacctaacatcattggactcaatgttgccttgcctttgggtctctagACAGAGACAGGGCATAGCCCAGAAAAT---GATCTCATTGGCCACTGTTTGGGCTCACATGTGGCTGGGGAAGCAGGAAGGAGGCTGGAGGGCCATGTGGGCAGGATAACAGgtgagtgtcattttgactaatacgcaagcaggggtgggcagagtacagag Alignment from GeneWise ACAGAGATGGGGTACAGCCCAGAGAACGTGCACCTCATCGGCCACAGCTTGGGCTCACATGTGGCTGGGGAAGCAGGCAGGAGGCTGGAGGGCCATGTGGGCAGGATCACAG tataacctaacatcattggactcaatgttgccttgcctttgggtctctagACAGAGACAGGGCATAGCCCAGAAAAT---GATCTCATTGGCCACTGTTTGGGCTCACATGTGGCTGGGGAAGCAGGAAGGAGGCTGGAGGGCCATGTGGGCAGGATAACAGgtgagtgtcattttgactaatacgcaagcaggggtgggcagagtacagag #### Pola2_ID1328_13 --> 0 - 2 Original Alignment AACTGTAAGTTGACAAGCCCATTCGAAGACGTTTTCAAGCAATGCCTGAGAACAGTTATCGAAGGAACGAGAag aacacacagtttgaggtcatgctctggtaatgcagctcttctctccccagAACTCTAAGTCAACAAGCCCATTTGAAGACGTTCTCAAACAATGCCTGAGAACAGTTATTGAAGGAACAAGGaggtaagtttcccaactgctggacaaaactgaatcctaaaggtactgaagac Alignment from CESAR AACTGTAAGTTGACAAGCCCATTCGAAGACGTTTTCAAGCAATGCCTGAGAACAGTTATCGAAGGAACGAGAag aacacacagtttgaggtcatgctctggtaatgcagctcttctctccccagAACTCTAAGTCAACAAGCCCATTTGAAGACGTTCTCAAACAATGCCTGAGAACAGTTATTGAAGGAACAAGGaggtaagtttcccaactgctggacaaaactgaatcctaaaggtactgaagac Alignment from Spaln_aa2Genome AACTGTAAGTTGACAAGCCCATTCGAAGACGTTTTCAAGCAATGCCTGAGAACAGTTATCGAAGGAACGAGAAG aacacacagtttgaggtcatgctctggtaatgcagctcttctctccccagAACTCTAAGTCAACAAGCCCATTTGAAGACGTTCTCAAACAATGCCTGAGAACAGTTATTGAAGGAACAAGGAGgtaagtttcccaactgctggacaaaactgaatcctaaaggtactgaagac Alignment from Spaln_nt2Genome AACTGTAAGTTGACAAGCCCATTCGAAGACGTTTTCAAGCAATGCCTGAGAACAGTTATCGAAGGAACGAGAAG aacacacagtttgaggtcatgctctggtaatgcagctcttctctccccagAACTCTAAGTCAACAAGCCCATTTGAAGACGTTCTCAAACAATGCCTGAGAACAGTTATTGAAGGAACAAGGAGgtaagtttcccaactgctggacaaaactgaatcctaaaggtactgaagac Alignment from Pairagon AACTGTAAGTTGACAAGCCCATTCGAAGACGTTTTCAAGCAATGCCTGAGAACAGTTATCGAAGGAACGAGAAG aacacacagtttgaggtcatgctctggtaatgcagctcttctctccccagAACTCTAAGTCAACAAGCCCATTTGAAGACGTTCTCAAACAATGCCTGAGAACAGTTATTGAAGGAACAAGGAGgtaagtttcccaactgctggacaaaactgaatcctaaaggtactgaagac Alignment from Exonerate_protein2genome GGACCTTTCCTGGATGCTAAACATGAACAGGTGGAGAACTGTAAGTTGACAAGCCCATTCGAAGACGTTTTCAAGCAATGCCTGAGAACAGTTATCGAAGGAACGAGAAG aacacacagtttgaGGTCATGCTCTGGTAATGCAGCTCTTCTCTCCCCAGAACTCTAAGTCAACAAGCCCATTTGAAGACGTTCTCAAACAATGCCTGAGAACAGTTATTGAAGGAACAAGGAGgtaagtttcccaactgctggacaaaactgaatcctaaaggtactgaagac Alignment from Exonerate_coding2genome GGACCTTTCCTGGATGCTAAACATGAACAGGTGGAGAACTGTAAGTTGACAAGCCCATTCGAAGACGTTTTCAAGCAATGCCTGAGAACAGTTATCGAAGGAACGAGAAG aacacacagtttgaGGTCATGCTCTGGTAATGCAGCTCTTCTCTCCCCAGAACTCTAAGTCAACAAGCCCATTTGAAGACGTTCTCAAACAATGCCTGAGAACAGTTATTGAAGGAACAAGGAGgtaagtttcccaactgctggacaaaactgaatcctaaaggtactgaagac Alignment from GeneWise AACTGTAAGTTGACAAGCCCATTCGAAGACGTTTTCAAGCAATGCCTGAGAACAGTTATCGAAGGAACGAGAAG aacacacagtttgaggtcatgctctggtaatgcagctcttctctccccagAACTCTAAGTCAACAAGCCCATTTGAAGACGTTCTCAAACAATGCCTGAGAACAGTTATTGAAGGAACAAGGAGgtaagtttcccaactgctggacaaaactgaatcctaaaggtactgaagac #### Pola2_ID1334_7 --> 2 - 0 Original Alignment ttCTGACCAGTAAGATCGAAGAGCTCGGCAGCGAGCTGAAGGAGCATCACAAGATCGAGGCCTTTACCCCTCTCCTGGTCCCAGCGCAA tttccagcaagccaatctttttttaccaccccgccctctttcttttccagttCTAACCAGCAAAATTGAAGAACTTGGTAGCGAGCTGAAAGACCATCACAAAATTGAG------GCTTCCATTTTGGGCCCAGCACTAgtgagtcaaggactcattttcaatctgggaaggcgtgtgtccactcaaat Alignment from CESAR ttCTGACCAGTAAGATCGAAGAGCTCGGCAGCGAGCTGAAGGAGCATCACAAGATCGAGGCCTTTACCCCTCTCCTGGTCCCAGCGCAA tttccagcaagccaatctttttttaccaccccgccctctttcttttccagttCTAACCAGCAAAATTGAAGAACTTGGTAGCGAGCTGAAAGACCATCACAAAATTGAGGCT------TCCATTTTGGGCCCAGCACTAgtgagtcaaggactcattttcaatctgggaaggcgtgtgtccactcaaat Alignment from Spaln_aa2Genome TTCTGACCAGTAAGATCGAAGAGCTCGGCAGCGAGCTGAAGGAGCATCACAAGATCGAGGCCTTTACCCCTCTCCTGGTCCCAGCGCAA tttccagcaagccaatctttttttaccaccccgccctctttcttttccagTTCTAACCAGCAAAATTGAAGAACTTGGTAGCGAGCTGAAAGACCATCACAAAATTGAGGCT------TCCATTTTGGGCCCAGCACTAgtgagtcaaggactcattttcaatctgggaaggcgtgtgtccactcaaat Alignment from Spaln_nt2Genome TTCTGACCAGTAAGATCGAAGAGCTCGGCAGCGAGCTGAAGGAGCATCACAAGATCGAGGCCTTTACCCCTCTCCTGGTCCCAGCGCAA tttccagcaagccaatctttttttaccaccccgccctctttcttttccagTTCTAACCAGCAAAATTGAAGAACTTGGTAGCGAGCTGAAAGACCATCACAAAATTGAGGCTT----CCATTT--TGGGCCCAGCACTAgtgagtcaaggactcattttcaatctgggaaggcgtgtgtccactcaaat Alignment from Pairagon TTCTGACCAGTAAGATCGAAGAGCTCGGCAGCGAGCTGAAGGAGCATCACAAGATCGAGGCCTTTACCCCTCTCCTGGTCCCAGCGCAA tttccagcaagccaatctttttttaccaccccgccctctttcttttccagTTCTAACCAGCAAAATTGAAGAACTTGGTAGCGAGCTGAAAGACCATCACAAAATTGAGGCTTCCA------TTTTGGGCCCAGCACTAgtgagtcaaggactcattttcaatctgggaaggcgtgtgtccactcaaat Alignment from Exonerate_protein2genome TTCTGACCAGTAAGATCGAAGAGCTCGGCAGCGAGCTGAAGGAGCATCACAAGATCGAGGCCTTTACCCCTCTCCTGGTCCCAGCGCAA tttccagcaagccaatctttttttaccaccccgccctctttcttttccagTTCTAACCAGCAAAATTGAAGAACTTGGTAGCGAGCTGAAAGACCATCACAAAATTGAGGCT------TCCATTTTGGGCCCAGCACTAgtgagtcaaggactcattttcaatctgggaaggcgtgtgtccactcaaat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TTCTGACCAGTAAGATCGAAGAGCTCGGCAGCGAGCTGAAGGAGCATCACAAGATCGAGGCCTTTACCCCTCTCCTGGTCCCAGCGCAA tttccagcaagccaatctttttttaccaccccgccctctttcttttccagTTCTAACCAGCAAAATTGAAGAACTTGGTAGCGAGCTGAAAGACCATCACAAAATTGAGGCT------TCCATTTTGGGCCCAGCACTAgtgagtcaaggactcattttcaatctgggaaggcgtgtgtccactcaaat #### Poll_ID9481_6 --> 0 - 0 Original Alignment GGCTTCCGAAACCTAGAAGATCTCCAAAGCCTGGGCTCCCTGACCGCTCAGCAGGCCATTGGCTTGAAGCACTACGATGACTTCCTGGACCGCATGCCCAGGGAGGAGGCTGCGGAAATTGAGCAGACG ccagtgtttcagctgttatgtacggaagagacgtcatttccatccctcagGCTTTCCAGAATCTTAAAGACCTTCAAAGCCTAGGCTCCTTGACAACTCAGCAGACCATTGGCTTGAAGCATTATGATGACTTCCTCGATCGCATGCCCTGGGAGGAGGCAGCTGAGATTGAAAAGGCAgtaaataaagtacacatagcagaggatgaaaaagtaaaaataaagcatac Alignment from CESAR GGCTTCCGAAACCTAGAAGATCTCCAAAGCCTGGGCTCCCTGACCGCTCAGCAGGCCATTGGCTTGAAGCACTACGATGACTTCCTGGACCGCATGCCCAGGGAGGAGGCTGCGGAAATTGAGCAGACG ccagtgtttcagctgttatgtacggaagagacgtcatttccatccctcagGCTTTCCAGAATCTTAAAGACCTTCAAAGCCTAGGCTCCTTGACAACTCAGCAGACCATTGGCTTGAAGCATTATGATGACTTCCTCGATCGCATGCCCTGGGAGGAGGCAGCTGAGATTGAAAAGGCAgtaaataaagtacacatagcagaggatgaaaaagtaaaaataaagcatac Alignment from Spaln_aa2Genome GGCTTCCGAAACCTAGAAGATCTCCAAAGCCTGGGCTCCCTGACCGCTCAGCAGGCCATTGGCTTGAAGCACTACGATGACTTCCTGGACCGCATGCCCAGGGAGGAGGCTGCGGAAATTGAGCAGACG ccagtgtttcagctgttatgtacggaagagacgtcatttccatccctcagGCTTTCCAGAATCTTAAAGACCTTCAAAGCCTAGGCTCCTTGACAACTCAGCAGACCATTGGCTTGAAGCATTATGATGACTTCCTCGATCGCATGCCCTGGGAGGAGGCAGCTGAGATTGAAAAGGCAgtaaataaagtacacatagcagaggatgaaaaagtaaaaataaagcatac Alignment from Spaln_nt2Genome GGCTTCCGAAACCTAGAAGATCTCCAAAGCCTGGGCTCCCTGACCGCTCAGCAGGCCATTGGCTTGAAGCACTACGATGACTTCCTGGACCGCATGCCCAGGGAGGAGGCTGCGGAAATTGAGCAGACG ccagtgtttcagctgttatgtacggaagagacgtcatttccatccctcagGCTTTCCAGAATCTTAAAGACCTTCAAAGCCTAGGCTCCTTGACAACTCAGCAGACCATTGGCTTGAAGCATTATGATGACTTCCTCGATCGCATGCCCTGGGAGGAGGCAGCTGAGATTGAAAAGGCAgtaaataaagtacacatagcagaggatgaaaaagtaaaaataaagcatac Alignment from Pairagon GGCTTCCGAAACCTAGAAGATCTCCAAAGCCTGGGCTCCCTGACCGCTCAGCAGGCCATTGGCTTGAAGCACTACGATGACTTCCTGGACCGCATGCCCAGGGAGGAGGCTGCGGAAATTGAGCAGACG ccagtgtttcagctgttatgtacggaagagacgtcatttccatccctcagGCTTTCCAGAATCTTAAAGACCTTCAAAGCCTAGGCTCCTTGACAACTCAGCAGACCATTGGCTTGAAGCATTATGATGACTTCCTCGATCGCATGCCCTGGGAGGAGGCAGCTGAGATTGAAAAGGCAgtaaataaagtacacatagcagaggatgaaaaagtaaaaataaagcatac Alignment from Exonerate_protein2genome GGCTTCCGAAACCTAGAAGATCTCCAAAGCCTGGGCTCCCTGACCGCTCAGCAGGCCATTGGCTTGAAGCACTACGATGACTTCCTGGACCGCATGCCCAGGGAGGAGGCTGCGGAAATTGAGCAGACG ccagtgtttcagctgttatgtacggaagagacgtcatttccatccctcagGCTTTCCAGAATCTTAAAGACCTTCAAAGCCTAGGCTCCTTGACAACTCAGCAGACCATTGGCTTGAAGCATTATGATGACTTCCTCGATCGCATGCCCTGGGAGGAGGCAGCTGAGATTGAAAAGGCAgtaaataaagtacacatagcagaggatgaaaaagtaaaaataaagcatac Alignment from Exonerate_coding2genome GGCTTCCGAAACCTAGAAGATCTCCAAAGCCTGGGCTCCCTGACCGCTCAGCAGGCCATTGGCTTGAAGCACTACGATGACTTCCTGGACCGCATGCCCAGGGAGGAGGCTGCGGAAATTGAGCAGACG ccagtgtttcagctgttatgtacggaagagacgtcatttccatccctcagGCTTTCCAGAATCTTAAAGACCTTCAAAGCCTAGGCTCCTTGACAACTCAGCAGACCATTGGCTTGAAGCATTATGATGACTTCCTCGATCGCATGCCCTGGGAGGAGGCAGCTGAGATTGAAAAGGCAgtaaataaagtacacatagcagaggatgaaaaagtaaaaataaagcatac Alignment from GeneWise GGCTTCCGAAACCTAGAAGATCTCCAAAGCCTGGGCTCCCTGACCGCTCAGCAGGCCATTGGCTTGAAGCACTACGATGACTTCCTGGACCGCATGCCCAGGGAGGAGGCTGCGGAAATTGAGCAGACG ccagtgtttcagctgttatgtacggaagagacgtcatttccatccctcagGCTTTCCAGAATCTTAAAGACCTTCAAAGCCTAGGCTCCTTGACAACTCAGCAGACCATTGGCTTGAAGCATTATGATGACTTCCTCGATCGCATGCCCTGGGAGGAGGCAGCTGAGATTGAAAAGGCAgtaaataaagtacacatagcagaggatgaaaaagtaaaaataaagcatac #### Polr2g_ID2378_5 --> 0 - 0 Original Alignment TCCATCCCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAGACCATGGACGAG ttcagtttctcatcttggaagtatgtcacaacatggcttttctcttctagTCCATACCATCTGAAATGGAATTTGACTCAAACTCAAACCCCCCCTGCTATAAGACCATGGATGAAgtaagacagcatgcactgggggatgagatgacaagagaggacagcaattc Alignment from CESAR TCCATCCCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAGACCATGGACGAG ttcagtttctcatcttggaagtatgtcacaacatggcttttctcttctagTCCATACCATCTGAAATGGAATTTGACTCAAACTCAAACCCCCCCTGCTATAAGACCATGGATGAAgtaagacagcatgcactgggggatgagatgacaagagaggacagcaattc Alignment from Spaln_aa2Genome TCCATCCCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAGACCATGGACGAG ttcagtttctcatcttggaagtatgtcacaacatggcttttctcttctagTCCATACCATCTGAAATGGAATTTGACTCAAACTCAAACCCCCCCTGCTATAAGACCATGGATGAAgtaagacagcatgcactgggggatgagatgacaagagaggacagcaattc Alignment from Spaln_nt2Genome TCCATCCCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAGACCATGGACGAG ttcagtttctcatcttggaagtatgtcacaacatggcttttctcttctagTCCATACCATCTGAAATGGAATTTGACTCAAACTCAAACCCCCCCTGCTATAAGACCATGGATGAAgtaagacagcatgcactgggggatgagatgacaagagaggacagcaattc Alignment from Pairagon TCCATCCCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAGACCATGGACGAG ttcagtttctcatcttggaagtatgtcacaacatggcttttctcttctagTCCATACCATCTGAAATGGAATTTGACTCAAACTCAAACCCCCCCTGCTATAAGACCATGGATGAAgtaagacagcatgcactgggggatgagatgacaagagaggacagcaattc Alignment from Exonerate_protein2genome TCCATCCCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAGACCATGGACGAG ttcagtttctcatcttggaagtatgtcacaacatggcttttctcttctagTCCATACCATCTGAAATGGAATTTGACTCAAACTCAAACCCCCCCTGCTATAAGACCATGGATGAAgtaagacagcatgcactgggggatgagatgacaagagaggacagcaattc Alignment from Exonerate_coding2genome TCCATCCCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAGACCATGGACGAG ttcagtttctcatcttggaagtatgtcacaacatggcttttctcttctagTCCATACCATCTGAAATGGAATTTGACTCAAACTCAAACCCCCCCTGCTATAAGACCATGGATGAAgtaagacagcatgcactgggggatgagatgacaagagaggacagcaattc Alignment from GeneWise TCCATCCCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAGACCATGGACGAG ttcagtttctcatcttggaagtatgtcacaacatggcttttctcttctagTCCATACCATCTGAAATGGAATTTGACTCAAACTCAAACCCCCCCTGCTATAAGACCATGGATGAAgtaagacagcatgcactgggggatgagatgacaagagaggacagcaattc #### Ppp1r32_ID2843_8 --> 0 - 0 Original Alignment GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGAT------CGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acactctgttgctccatgtggtgtgacttggatacttgtatctatttcagGGGAGTGATTTCCTGCCGGTGCTGTCCAGGGGATCTGATCCCGATCGGGACACAGGATTTAGCCGAGTGAACGAAAGAACACTAAAGCTAAGAgtaagtattggggtaagacaatatatagttgtccctgtctagactcgctt Alignment from CESAR GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCT------GATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acactctgttgctccatgtggtgtgacttggatacttgtatctatttcagGGGAGTGATTTCCTGCCGGTGCTGTCCAGGGGATCTGATCCCGATCGGGACACAGGATTTAGCCGAGTGAACGAAAGAACACTAAAGCTAAGAgtaagtattggggtaagacaatatatagttgtccctgtctagactcgctt Alignment from Spaln_aa2Genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCT------GATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acactctgttgctccatgtggtgtgacttggatacttgtatctatttcagGGGAGTGATTTCCTGCCGGTGCTGTCCAGGGGATCTGATCCCGATCGGGACACAGGATTTAGCCGAGTGAACGAAAGAACACTAAAGCTAAGAgtaagtattggggtaagacaatatatagttgtccctgtctagactcgctt Alignment from Spaln_nt2Genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCT------GATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acactctgttgctccatgtggtgtgacttggatacttgtatctatttcagGGGAGTGATTTCCTGCCGGTGCTGTCCAGGGGATCTGATCCCGATCGGGACACAGGATTTAGCCGAGTGAACGAAAGAACACTAAAGCTAAGAgtaagtattggggtaagacaatatatagttgtccctgtctagactcgctt Alignment from Pairagon GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCT------GATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acactctgttgctccatgtggtgtgacttggatacttgtatctatttcagGGGAGTGATTTCCTGCCGGTGCTGTCCAGGGGATCTGATCCCGATCGGGACACAGGATTTAGCCGAGTGAACGAAAGAACACTAAAGCTAAGAgtaagtattggggtaagacaatatatagttgtccctgtctagactcgctt Alignment from Exonerate_protein2genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCT------GATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acactctgttgctccatgtggtgtgacttggatacttgtatctatttcagGGGAGTGATTTCCTGCCGGTGCTGTCCAGGGGATCTGATCCCGATCGGGACACAGGATTTAGCCGAGTGAACGAAAGAACACTAAAGCTAAGAgtaagtattggggtaagacaatatatagttgtccctgtctagactcgctt Alignment from Exonerate_coding2genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCT------GATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acactctgttgctccatgtggtgtgacttggatacttgtatctatttcagGGGAGTGATTTCCTGCCGGTGCTGTCCAGGGGATCTGATCCCGATCGGGACACAGGATTTAGCCGAGTGAACGAAAGAACACTAAAGCTAAGAgtaagtattggggtaagacaatatatagttgtccctgtctagactcgctt Alignment from GeneWise GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGAT------CGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA acactctgttgctccatgtggtgtgacttggatacttgtatctatttcagGGGAGTGATTTCCTGCCGGTGCTGTCCAGGGGATCTGATCCCGATCGGGACACAGGATTTAGCCGAGTGAACGAAAGAACACTAAAGCTAAGAgtaagtattggggtaagacaatatatagttgtccctgtctagactcgctt #### Ppp1r32_ID2848_3 --> 1 - 0 Original Alignment gCAACAAATCCGAGACACTTCCAAGTCTGTGACCAGTCAGAGCTACTCTCCCCTAGAAGTGCCCGATGGTAAACAACCCCTGCCCTGGAACCTGCACCAGACAACCTCCAGCTACGGGCGAGAAAAACTCAACCCTGGACCACATTCCAAGGAG gaagacattctcataactcaatactccataacaagtgttcttgtgttcagcCAGCAGATTCAGGATACCTCAAAGTCTGTAACTAGTCAATGTTACTCTCCCCTGGAGGTGCCCGATGGGAAACAACCTTTGCCCTGGAATCTGCACCACAGAACCTCCACCTATGGGCAAGAAGAACTTAATCCTGGACCACACTCGAAAGAAgtgaaatagggcccacagctagatgggagggaataaaattttaccatgac Alignment from CESAR gCAACAAATCCGAGACACTTCCAAGTCTGTGACCAGTCAGAGCTACTCTCCCCTAGAAGTGCCCGATGGTAAACAACCCCTGCCCTGGAACCTGCACCAGACAACCTCCAGCTACGGGCGAGAAAAACTCAACCCTGGACCACATTCCAAGGAG gaagacattctcataactcaatactccataacaagtgttcttgtgttcagcCAGCAGATTCAGGATACCTCAAAGTCTGTAACTAGTCAATGTTACTCTCCCCTGGAGGTGCCCGATGGGAAACAACCTTTGCCCTGGAATCTGCACCACAGAACCTCCACCTATGGGCAAGAAGAACTTAATCCTGGACCACACTCGAAAGAAgtgaaatagggcccacagctagatgggagggaataaaattttaccatgac Alignment from Spaln_aa2Genome GCAACAAATCCGAGACACTTCCAAGTCTGTGACCAGTCAGAGCTACTCTCCCCTAGAAGTGCCCGATGGTAAACAACCCCTGCCCTGGAACCTGCACCAGACAACCTCCAGCTACGGGCGAGAAAAACTCAACCCTGGACCACATTCCAAGGAG gaagacattctcataactcaatactccataacaagtgttcttgtgttcagCCAGCAGATTCAGGATACCTCAAAGTCTGTAACTAGTCAATGTTACTCTCCCCTGGAGGTGCCCGATGGGAAACAACCTTTGCCCTGGAATCTGCACCACAGAACCTCCACCTATGGGCAAGAAGAACTTAATCCTGGACCACACTCGAAAGAAgtgaaatagggcccacagctagatgggagggaataaaattttaccatgac Alignment from Spaln_nt2Genome GCAACAAATCCGAGACACTTCCAAGTCTGTGACCAGTCAGAGCTACTCTCCCCTAGAAGTGCCCGATGGTAAACAACCCCTGCCCTGGAACCTGCACCAGACAACCTCCAGCTACGGGCGAGAAAAACTCAACCCTGGACCACATTCCAAGGAG gaagacattctcataactcaatactccataacaagtgttcttgtgttcagCCAGCAGATTCAGGATACCTCAAAGTCTGTAACTAGTCAATGTTACTCTCCCCTGGAGGTGCCCGATGGGAAACAACCTTTGCCCTGGAATCTGCACCACAGAACCTCCACCTATGGGCAAGAAGAACTTAATCCTGGACCACACTCGAAAGAAgtgaaatagggcccacagctagatgggagggaataaaattttaccatgac Alignment from Pairagon GCAACAAATCCGAGACACTTCCAAGTCTGTGACCAGTCAGAGCTACTCTCCCCTAGAAGTGCCCGATGGTAAACAACCCCTGCCCTGGAACCTGCACCAGACAACCTCCAGCTACGGGCGAGAAAAACTCAACCCTGGACCACATTCCAAGGAG gaagacattctcataactcaatactccataacaagtgttcttgtgttcagCCAGCAGATTCAGGATACCTCAAAGTCTGTAACTAGTCAATGTTACTCTCCCCTGGAGGTGCCCGATGGGAAACAACCTTTGCCCTGGAATCTGCACCACAGAACCTCCACCTATGGGCAAGAAGAACTTAATCCTGGACCACACTCGAAAGAAgtgaaatagggcccacagctagatgggagggaataaaattttaccatgac Alignment from Exonerate_protein2genome GCAACAAATCCGAGACACTTCCAAGTCTGTGACCAGTCAGAGCTACTCTCCCCTAGAAGTGCCCGATGGTAAACAACCCCTGCCCTGGAACCTGCACCAGACAACCTCCAGCTACGGGCGAGAAAAACTCAACCCTGGACCACATTCCAAGGAG gaagacattctcataactcaatactccataacaagtgttcttgtgttcagCCAGCAGATTCAGGATACCTCAAAGTCTGTAACTAGTCAATGTTACTCTCCCCTGGAGGTGCCCGATGGGAAACAACCTTTGCCCTGGAATCTGCACCACAGAACCTCCACCTATGGGCAAGAAGAACTTAATCCTGGACCACACTCGAAAGAAgtgaaatagggcccacagctagatgggagggaataaaattttaccatgac Alignment from Exonerate_coding2genome GCAACAAATCCGAGACACTTCCAAGTCTGTGACCAGTCAGAGCTACTCTCCCCTAGAAGTGCCCGATGGTAAACAACCCCTGCCCTGGAACCTGCACCAGACAACCTCCAGCTACGGGCGAGAAAAACTCAACCCTGGACCACATTCCAAGGAG gaagacattctcataactcaatactccataacaagtgttcttgtgttcagCCAGCAGATTCAGGATACCTCAAAGTCTGTAACTAGTCAATGTTACTCTCCCCTGGAGGTGCCCGATGGGAAACAACCTTTGCCCTGGAATCTGCACCACAGAACCTCCACCTATGGGCAAGAAGAACTTAATCCTGGACCACACTCGAAAGAAgtgaaatagggcccacagctagatgggagggaataaaattttaccatgac Alignment from GeneWise GCAACAAATCCGAGACACTTCCAAGTCTGTGACCAGTCAGAGCTACTCTCCCCTAGAAGTGCCCGATGGTAAACAACCCCTGCCCTGGAACCTGCACCAGACAACCTCCAGCTACGGGCGAGAAAAACTCAACCCTGGACCACATTCCAAGGAG gaagacattctcataactcaatactccataacaagtgttcttgtgttcagCCAGCAGATTCAGGATACCTCAAAGTCTGTAACTAGTCAATGTTACTCTCCCCTGGAGGTGCCCGATGGGAAACAACCTTTGCCCTGGAATCTGCACCACAGAACCTCCACCTATGGGCAAGAAGAACTTAATCCTGGACCACACTCGAAAGAAgtgaaatagggcccacagctagatgggagggaataaaattttaccatgac #### Ppp6r3_ID79_14 --> 0 - 2 Original Alignment GCCTTTTCTGATTATCAGATGCAACAAATGACG---TCCAATTTTATTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCaa acagagtataacataactaccagcattttttctctctctctctcttaaagGGGTTTTCTGATTACCAGATGCAGCAAAAGGCTTCACCCAATTTTACTGACCAATATGGCTTCAATGATGAAAAGTTTGCAGATCAAGATGATAATGGCaagtaagtaagtttatcgcaacccacatgagttatctctatggtgctcttta Alignment from CESAR GCCTTTTCTGATTATCAGATGCAACAAATGACGTCC---AATTTTATTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCaa acagagtataacataactaccagcattttttctctctctctctcttaaagGGGTTTTCTGATTACCAGATGCAGCAAAAGGCTTCACCCAATTTTACTGACCAATATGGCTTCAATGATGAAAAGTTTGCAGATCAAGATGATAATGGCaagtaagtaagtttatcgcaacccacatgagttatctctatggtgctcttta Alignment from Spaln_aa2Genome GCCTTTTCTGATTATCAGATGCAACAAATGACGTCC---AATTTTATTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCAA acagagtataacataactaccagcattttttctctctctctctcttaaagGGGTTTTCTGATTACCAGATGCAGCAAAAGGCTTCACCCAATTTTACTGACCAATATGGCTTCAATGATGAAAAGTTTGCAGATCAAGATGATAATGGCAAgtaagtaagtttatcgcaacccacatgagttatctctatggtgctcttta Alignment from Spaln_nt2Genome GCCTTTTCTGATTATCAGATGCAACAAATGACGTC---CAATTTTATTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCAA acagagtataacataactaccagcattttttctctctctctctcttaaagGGGTTTTCTGATTACCAGATGCAGCAAAAGGCTTCACCCAATTTTACTGACCAATATGGCTTCAATGATGAAAAGTTTGCAGATCAAGATGATAATGGCAAgtaagtaagtttatcgcaacccacatgagttatctctatggtgctcttta Alignment from Pairagon GCCTTTTCTGATTATCAGATGCAACAAATGACGT---CCAATTTTATTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCAA acagagtataacataactaccagcattttttctctctctctctcttaaagGGGTTTTCTGATTACCAGATGCAGCAAAAGGCTTCACCCAATTTTACTGACCAATATGGCTTCAATGATGAAAAGTTTGCAGATCAAGATGATAATGGCAAgtaagtaagtttatcgcaacccacatgagttatctctatggtgctcttta Alignment from Exonerate_protein2genome GCCTTTTCTGATTATCAGATGCAACAAATGACGTCC---AATTTTATTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCAA acagagtataacataactaccagcattttttctctctctctctcttaaagGGGTTTTCTGATTACCAGATGCAGCAAAAGGCTTCACCCAATTTTACTGACCAATATGGCTTCAATGATGAAAAGTTTGCAGATCAAGATGATAATGGCAAgtaagtaagtttatcgcaacccacatgagttatctctatggtgctcttta Alignment from Exonerate_coding2genome GCCTTTTCTGATTATCAGATGCAACAAATGACGTCC---AATTTTATTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCAA acagagtataacataactaccagcattttttctctctctctctcttaaagGGGTTTTCTGATTACCAGATGCAGCAAAAGGCTTCACCCAATTTTACTGACCAATATGGCTTCAATGATGAAAAGTTTGCAGATCAAGATGATAATGGCAAgtaagtaagtttatcgcaacccacatgagttatctctatggtgctcttta Alignment from GeneWise GCCTTTTCTGATTATCAGATGCAACAAATGACGTCC---AATTTTATTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCAA acagagtataacataactaccagcattttttctctctctctctcttaaagGGGTTTTCTGATTACCAGATGCAGCAAAAGGCTTCACCCAATTTTACTGACCAATATGGCTTCAATGATGAAAAGTTTGCAGATCAAGATGATAATGGCAAgtaagtaagtttatcgcaacccacatgagttatctctatggtgctcttta #### Ppp6r3_ID83_11 --> 1 - 1 Original Alignment gGCTGAAGGAGGACGACGGCATGGTTACATGGGACACCTTACGAGGATAGCTAACTGTATTGTGCACAGCACTGACAAGGGTCCGAACAGTGCGTTAGTACAGCAGCTCATCAAAg agctccttgcccctaatcatgagcatgcacttatcttttttcttttctaggGCTGAAGGAGGGCGACGGCATAGTTACATGGGACACCTTACAAGGATAGCTAACTGTATTGTGCACAGCACTGACAAGGGTCCAAACAGTGCATTAGTTCAGCAGCTTATCAAAggtaagggaagtaggataatcccactagctctgtttcagaactacattttt Alignment from CESAR gGCTGAAGGAGGACGACGGCATGGTTACATGGGACACCTTACGAGGATAGCTAACTGTATTGTGCACAGCACTGACAAGGGTCCGAACAGTGCGTTAGTACAGCAGCTCATCAAAg agctccttgcccctaatcatgagcatgcacttatcttttttcttttctaggGCTGAAGGAGGGCGACGGCATAGTTACATGGGACACCTTACAAGGATAGCTAACTGTATTGTGCACAGCACTGACAAGGGTCCAAACAGTGCATTAGTTCAGCAGCTTATCAAAggtaagggaagtaggataatcccactagctctgtttcagaactacattttt Alignment from Spaln_aa2Genome GGCTGAAGGAGGACGACGGCATGGTTACATGGGACACCTTACGAGGATAGCTAACTGTATTGTGCACAGCACTGACAAGGGTCCGAACAGTGCGTTAGTACAGCAGCTCATCAAAG agctccttgcccctaatcatgagcatgcacttatcttttttcttttctagGGCTGAAGGAGGGCGACGGCATAGTTACATGGGACACCTTACAAGGATAGCTAACTGTATTGTGCACAGCACTGACAAGGGTCCAAACAGTGCATTAGTTCAGCAGCTTATCAAAGgtaagggaagtaggataatcccactagctctgtttcagaactacattttt Alignment from Spaln_nt2Genome GGCTGAAGGAGGACGACGGCATGGTTACATGGGACACCTTACGAGGATAGCTAACTGTATTGTGCACAGCACTGACAAGGGTCCGAACAGTGCGTTAGTACAGCAGCTCATCAAAG agctccttgcccctaatcatgagcatgcacttatcttttttcttttctagGGCTGAAGGAGGGCGACGGCATAGTTACATGGGACACCTTACAAGGATAGCTAACTGTATTGTGCACAGCACTGACAAGGGTCCAAACAGTGCATTAGTTCAGCAGCTTATCAAAGgtaagggaagtaggataatcccactagctctgtttcagaactacattttt Alignment from Pairagon GGCTGAAGGAGGACGACGGCATGGTTACATGGGACACCTTACGAGGATAGCTAACTGTATTGTGCACAGCACTGACAAGGGTCCGAACAGTGCGTTAGTACAGCAGCTCATCAAAG agctccttgcccctaatcatgagcatgcacttatcttttttcttttctagGGCTGAAGGAGGGCGACGGCATAGTTACATGGGACACCTTACAAGGATAGCTAACTGTATTGTGCACAGCACTGACAAGGGTCCAAACAGTGCATTAGTTCAGCAGCTTATCAAAGgtaagggaagtaggataatcccactagctctgtttcagaactacattttt Alignment from Exonerate_protein2genome GGCTGAAGGAGGACGACGGCATGGTTACATGGGACACCTTACGAGGATAGCTAACTGTATTGTGCACAGCACTGACAAGGGTCCGAACAGTGCGTTAGTACAGCAGCTCATCAAAG agctccttgcccctaatcatgagcatgcacttatcttttttcttttctagGGCTGAAGGAGGGCGACGGCATAGTTACATGGGACACCTTACAAGGATAGCTAACTGTATTGTGCACAGCACTGACAAGGGTCCAAACAGTGCATTAGTTCAGCAGCTTATCAAAGgtaagggaagtaggataatcccactagctctgtttcagaactacattttt Alignment from Exonerate_coding2genome GGCTGAAGGAGGACGACGGCATGGTTACATGGGACACCTTACGAGGATAGCTAACTGTATTGTGCACAGCACTGACAAGGGTCCGAACAGTGCGTTAGTACAGCAGCTCATCAAAG agctccttgcccctaatcatgagcatgcacttatcttttttcttttctagGGCTGAAGGAGGGCGACGGCATAGTTACATGGGACACCTTACAAGGATAGCTAACTGTATTGTGCACAGCACTGACAAGGGTCCAAACAGTGCATTAGTTCAGCAGCTTATCAAAGgtaagggaagtaggataatcccactagctctgtttcagaactacattttt Alignment from GeneWise GGCTGAAGGAGGACGACGGCATGGTTACATGGGACACCTTACGAGGATAGCTAACTGTATTGTGCACAGCACTGACAAGGGTCCGAACAGTGCGTTAGTACAGCAGCTCATCAAAG agctccttgcccctaatcatgagcatgcacttatcttttttcttttctagGGCTGAAGGAGGGCGACGGCATAGTTACATGGGACACCTTACAAGGATAGCTAACTGTATTGTGCACAGCACTGACAAGGGTCCAAACAGTGCATTAGTTCAGCAGCTTATCAAAGgtaagggaagtaggataatcccactagctctgtttcagaactacattttt #### Ppp6r3_ID89_5 --> 0 - 2 Original Alignment CGGCATTCAAATGCCTCACAATCACTTTGTGAAATTGTTCGCCTGAGCAGAGACCAGATGTTACAAGTTCAGAACAGTACAGAGCCAGACCCCCTGCTTGCCACTCTAGAAaa cagtgttaacctctcttgtaagcaactattctcactcccacgttctccagAGACACTCAAATGCCTCTCAGTCACTTTGTGAACTGGTTCGCCTCAGCAGAGATCAGATGTTACAGGTCCACAATAGTACGGAACCAGATCCACTATTGGCCACCCTAGAGaagtgagccatttatatgattcctcactgattagtgcacagaagatatccca Alignment from CESAR CGGCATTCAAATGCCTCACAATCACTTTGTGAAATTGTTCGCCTGAGCAGAGACCAGATGTTACAAGTTCAGAACAGTACAGAGCCAGACCCCCTGCTTGCCACTCTAGAAaa cagtgttaacctctcttgtaagcaactattctcactcccacgttctccagAGACACTCAAATGCCTCTCAGTCACTTTGTGAACTGGTTCGCCTCAGCAGAGATCAGATGTTACAGGTCCACAATAGTACGGAACCAGATCCACTATTGGCCACCCTAGAGaagtgagccatttatatgattcctcactgattagtgcacagaagatatccca Alignment from Spaln_aa2Genome CGGCATTCAAATGCCTCACAATCACTTTGTGAAATTGTTCGCCTGAGCAGAGACCAGATGTTACAAGTTCAGAACAGTACAGAGCCAGACCCCCTGCTTGCCACTCTAGAAAA cagtgttaacctctcttgtaagcaactattctcactcccacgttctccagAGACACTCAAATGCCTCTCAGTCACTTTGTGAACTGGTTCGCCTCAGCAGAGATCAGATGTTACAGGTCCACAATAGTACGGAACCAGATCCACTATTGGCCACCCTAGAGAAgtgagccatttatatgattcctcactgattagtgcacagaagatatccca Alignment from Spaln_nt2Genome CGGCATTCAAATGCCTCACAATCACTTTGTGAAATTGTTCGCCTGAGCAGAGACCAGATGTTACAAGTTCAGAACAGTACAGAGCCAGACCCCCTGCTTGCCACTCTAGAAAA cagtgttaacctctcttgtaagcaactattctcactcccacgttctccagAGACACTCAAATGCCTCTCAGTCACTTTGTGAACTGGTTCGCCTCAGCAGAGATCAGATGTTACAGGTCCACAATAGTACGGAACCAGATCCACTATTGGCCACCCTAGAGAAgtgagccatttatatgattcctcactgattagtgcacagaagatatccca Alignment from Pairagon CGGCATTCAAATGCCTCACAATCACTTTGTGAAATTGTTCGCCTGAGCAGAGACCAGATGTTACAAGTTCAGAACAGTACAGAGCCAGACCCCCTGCTTGCCACTCTAGAAAA cagtgttaacctctcttgtaagcaactattctcactcccacgttctccagAGACACTCAAATGCCTCTCAGTCACTTTGTGAACTGGTTCGCCTCAGCAGAGATCAGATGTTACAGGTCCACAATAGTACGGAACCAGATCCACTATTGGCCACCCTAGAGAAgtgagccatttatatgattcctcactgattagtgcacagaagatatccca Alignment from Exonerate_protein2genome CGGCATTCAAATGCCTCACAATCACTTTGTGAAATTGTTCGCCTGAGCAGAGACCAGATGTTACAAGTTCAGAACAGTACAGAGCCAGACCCCCTGCTTGCCACTCTAGAAAA cagtgttaacctctcttgtaagcaactattctcactcccacgttctccagAGACACTCAAATGCCTCTCAGTCACTTTGTGAACTGGTTCGCCTCAGCAGAGATCAGATGTTACAGGTCCACAATAGTACGGAACCAGATCCACTATTGGCCACCCTAGAGAAgtgagccatttatatgattcctcactgattagtgcacagaagatatccca Alignment from Exonerate_coding2genome CGGCATTCAAATGCCTCACAATCACTTTGTGAAATTGTTCGCCTGAGCAGAGACCAGATGTTACAAGTTCAGAACAGTACAGAGCCAGACCCCCTGCTTGCCACTCTAGAAAA cagtgttaacctctcttgtaagcaactattctcactcccacgttctccagAGACACTCAAATGCCTCTCAGTCACTTTGTGAACTGGTTCGCCTCAGCAGAGATCAGATGTTACAGGTCCACAATAGTACGGAACCAGATCCACTATTGGCCACCCTAGAGAAgtgagccatttatatgattcctcactgattagtgcacagaagatatccca Alignment from GeneWise CGGCATTCAAATGCCTCACAATCACTTTGTGAAATTGTTCGCCTGAGCAGAGACCAGATGTTACAAGTTCAGAACAGTACAGAGCCAGACCCCCTGCTTGCCACTCTAGAAAA cagtgttaacctctcttgtaagcaactattctcactcccacgttctccagAGACACTCAAATGCCTCTCAGTCACTTTGTGAACTGGTTCGCCTCAGCAGAGATCAGATGTTACAGGTCCACAATAGTACGGAACCAGATCCACTATTGGCCACCCTAGAGAAgtgagccatttatatgattcctcactgattagtgcacagaagatatccca #### Ppp6r3_ID92_3 --> 0 - 0 Original Alignment ATTGTGGATTTCTTGAAAAAGAAGCGTGATTTTGTGGATCTCATTATAAAGCACATAGGAACTTCTGCTATCATGGATTTATTGCTCAGGCTCTTGACATGTATTGAGCCTCCACAACCCAGGCAAGATGTTCTGAAT gcactcaaagccggagctgttgtgttctcgggtttctctcttccgtacagATCGTGGATTTTCTGAAAAAGAAGCATGATTTTGCCGATCTTATAATAAAGCATGTGGGAACTTCTGCAATCATGGATTTACTGCTCAGGCTCCTGACGTGTATTGAGCCTCCACAACCAAGACAAGATGTTCTGAATgtcagtgaatttactaagggtttccagagccctgattaagttagaggata Alignment from CESAR ATTGTGGATTTCTTGAAAAAGAAGCGTGATTTTGTGGATCTCATTATAAAGCACATAGGAACTTCTGCTATCATGGATTTATTGCTCAGGCTCTTGACATGTATTGAGCCTCCACAACCCAGGCAAGATGTTCTGAAT gcactcaaagccggagctgttgtgttctcgggtttctctcttccgtacagATCGTGGATTTTCTGAAAAAGAAGCATGATTTTGCCGATCTTATAATAAAGCATGTGGGAACTTCTGCAATCATGGATTTACTGCTCAGGCTCCTGACGTGTATTGAGCCTCCACAACCAAGACAAGATGTTCTGAATgtcagtgaatttactaagggtttccagagccctgattaagttagaggata Alignment from Spaln_aa2Genome ATTGTGGATTTCTTGAAAAAGAAGCGTGATTTTGTGGATCTCATTATAAAGCACATAGGAACTTCTGCTATCATGGATTTATTGCTCAGGCTCTTGACATGTATTGAGCCTCCACAACCCAGGCAAGATGTTCTGAAT gcactcaaagccggagctgttgtgttctcgggtttctctcttccgtacagATCGTGGATTTTCTGAAAAAGAAGCATGATTTTGCCGATCTTATAATAAAGCATGTGGGAACTTCTGCAATCATGGATTTACTGCTCAGGCTCCTGACGTGTATTGAGCCTCCACAACCAAGACAAGATGTTCTGAATgtcagtgaatttactaagggtttccagagccctgattaagttagaggata Alignment from Spaln_nt2Genome ATTGTGGATTTCTTGAAAAAGAAGCGTGATTTTGTGGATCTCATTATAAAGCACATAGGAACTTCTGCTATCATGGATTTATTGCTCAGGCTCTTGACATGTATTGAGCCTCCACAACCCAGGCAAGATGTTCTGAAT gcactcaaagccggagctgttgtgttctcgggtttctctcttccgtacagATCGTGGATTTTCTGAAAAAGAAGCATGATTTTGCCGATCTTATAATAAAGCATGTGGGAACTTCTGCAATCATGGATTTACTGCTCAGGCTCCTGACGTGTATTGAGCCTCCACAACCAAGACAAGATGTTCTGAATgtcagtgaatttactaagggtttccagagccctgattaagttagaggata Alignment from Pairagon ATTGTGGATTTCTTGAAAAAGAAGCGTGATTTTGTGGATCTCATTATAAAGCACATAGGAACTTCTGCTATCATGGATTTATTGCTCAGGCTCTTGACATGTATTGAGCCTCCACAACCCAGGCAAGATGTTCTGAAT gcactcaaagccggagctgttgtgttctcgggtttctctcttccgtacagATCGTGGATTTTCTGAAAAAGAAGCATGATTTTGCCGATCTTATAATAAAGCATGTGGGAACTTCTGCAATCATGGATTTACTGCTCAGGCTCCTGACGTGTATTGAGCCTCCACAACCAAGACAAGATGTTCTGAATgtcagtgaatttactaagggtttccagagccctgattaagttagaggata Alignment from Exonerate_protein2genome ATTGTGGATTTCTTGAAAAAGAAGCGTGATTTTGTGGATCTCATTATAAAGCACATAGGAACTTCTGCTATCATGGATTTATTGCTCAGGCTCTTGACATGTATTGAGCCTCCACAACCCAGGCAAGATGTTCTGAAT gcactcaaagccggagctgttgtgttctcgggtttctctcttccgtacagATCGTGGATTTTCTGAAAAAGAAGCATGATTTTGCCGATCTTATAATAAAGCATGTGGGAACTTCTGCAATCATGGATTTACTGCTCAGGCTCCTGACGTGTATTGAGCCTCCACAACCAAGACAAGATGTTCTGAATgtcagtgaatttactaagggtttccagagccctgattaagttagaggata Alignment from Exonerate_coding2genome ATTGTGGATTTCTTGAAAAAGAAGCGTGATTTTGTGGATCTCATTATAAAGCACATAGGAACTTCTGCTATCATGGATTTATTGCTCAGGCTCTTGACATGTATTGAGCCTCCACAACCCAGGCAAGATGTTCTGAAT gcactcaaagccggagctgttgtgttctcgggtttctctcttccgtacagATCGTGGATTTTCTGAAAAAGAAGCATGATTTTGCCGATCTTATAATAAAGCATGTGGGAACTTCTGCAATCATGGATTTACTGCTCAGGCTCCTGACGTGTATTGAGCCTCCACAACCAAGACAAGATGTTCTGAATgtcagtgaatttactaagggtttccagagccctgattaagttagaggata Alignment from GeneWise ATTGTGGATTTCTTGAAAAAGAAGCGTGATTTTGTGGATCTCATTATAAAGCACATAGGAACTTCTGCTATCATGGATTTATTGCTCAGGCTCTTGACATGTATTGAGCCTCCACAACCCAGGCAAGATGTTCTGAAT gcactcaaagccggagctgttgtgttctcgggtttctctcttccgtacagATCGTGGATTTTCTGAAAAAGAAGCATGATTTTGCCGATCTTATAATAAAGCATGTGGGAACTTCTGCAATCATGGATTTACTGCTCAGGCTCCTGACGTGTATTGAGCCTCCACAACCAAGACAAGATGTTCTGAATgtcagtgaatttactaagggtttccagagccctgattaagttagaggata #### Prdx3_ID13363_4 --> 1 - 0 Original Alignment cACATTTGTGTGTCCTACAGAAATTGTTGCTTTCAGTGACAAAGCCAATGAATTTCATGATGTAAACTGTGAAGTAGTTGCAGTTTCAGTGGATTCCCACTTCAGTCATCTTGCCTGGATCAACACACCAAGAAAG gcagtggcctaaggcttgctatgtgccaggtctgattgtgtcctttgcagtACATTTGTGCGCCCAACAGAGGTTGTAGCTTTTAGTGACAAAGCT---GAATTCCATGACGTGATCTGTCAAGTGGTTACAGTTTCAGTTGACTCACACCTGAGTCACCTG---GGGATCACCACACCAAGAAAAgtaagtttgctatcacctgtgcttacacctgtctacttcactgatgtgtg Alignment from CESAR cACATTTGTGTGTCCTACAGAAATTGTTGCTTTCAGTGACAAAGCCAATGAATTTCATGATGTAAACTGTGAAGTAGTTGCAGTTTCAGTGGATTCCCACTTCAGTCATCTTGCCTGGATCAACACACCAAGAAAG gcagtggcctaaggcttgctatgtgccaggtctgattgtgtcctttgcagtACATTTGTGCGCCCAACAGAGGTTGTAGCTTTTAGTGACAAAGCT---GAATTCCATGACGTGATCTGTCAAGTGGTTACAGTTTCAGTTGACTCACACCTGAGTCACCTGGGG---ATCACCACACCAAGAAAAgtaagtttgctatcacctgtgcttacacctgtctacttcactgatgtgtg Alignment from Spaln_aa2Genome CACATTTGTGTGTCCTACAGAAATTGTTGCTTTCAGTGACAAAGCCAATGAATTTCATGATGTAAACTGTGAAGTAGTTGCAGTTTCAGTGGATTCCCACTTCAGTCATCTTGCCTGGATCAACACACCAAGAAAG gcagtggcctaaggcttgctatgtgccaggtctgattgtgtcctttgcagTACATTTGTGCGCCCAACAGAGGTTGTAGCTTTTAGTGACAAAGCT---GAATTCCATGACGTGATCTGTCAAGTGGTTACAGTTTCAGTTGACTCACACCTGAGTCACCTGGGG---ATCACCACACCAAGAAAAgtaagtttgctatcacctgtgcttacacctgtctacttcactgatgtgtg Alignment from Spaln_nt2Genome CACATTTGTGTGTCCTACAGAAATTGTTGCTTTCAGTGACAAAGCCAATGAATTTCATGATGTAAACTGTGAAGTAGTTGCAGTTTCAGTGGATTCCCACTTCAGTCATCTTGCCTGGATCAACACACCAAGAAAG gcagtggcctaaggcttgctatgtgccaggtctgattgtgtcctttgcagTACATTTGTGCGCCCAACAGAGGTTGTAGCTTTTAGTGACAAAGC---TGAATTCCATGACGTGATCTGTCAAGTGGTTACAGTTTCAGTTGACTCACACCTGAGTCACCTGG---GGATCACCACACCAAGAAAAgtaagtttgctatcacctgtgcttacacctgtctacttcactgatgtgtg Alignment from Pairagon CACATTTGTGTGTCCTACAGAAATTGTTGCTTTCAGTGACAAAGCCAATGAATTTCATGATGTAAACTGTGAAGTAGTTGCAGTTTCAGTGGATTCCCACTTCAGTCATCTTGCCTGGATCAACACACCAAGAAAG gcagtggcctaaggcttgctatgtgccaggtctgattgtgtcctttgcagTACATTTGTGCGCCCAACAGAGGTTGTAGCTTTTAGTGACAAAGC---TGAATTCCATGACGTGATCTGTCAAGTGGTTACAGTTTCAGTTGACTCACACCTGAGTCACCTGG---GGATCACCACACCAAGAAAAgtaagtttgctatcacctgtgcttacacctgtctacttcactgatgtgtg Alignment from Exonerate_protein2genome CACATTTGTGTGTCCTACAGAAATTGTTGCTTTCAGTGACAAAGCCAATGAATTTCATGATGTAAACTGTGAAGTAGTTGCAGTTTCAGTGGATTCCCACTTCAGTCATCTTGCCTGGATCAACACACCAAGAAAG gcagtggcctaaggcttgctatgtgccaggtctgattgtgtcctttgcagTACATTTGTGCGCCCAACAGAGGTTGTAGCTTTTAGTGACAAAGCT---GAATTCCATGACGTGATCTGTCAAGTGGTTACAGTTTCAGTTGACTCACACCTGAGTCACCTGGGG---ATCACCACACCAAGAAAAgtaagtttgctatcacctgtgcttacacctgtctacttcactgatgtgtg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CACATTTGTGTGTCCTACAGAAATTGTTGCTTTCAGTGACAAAGCCAATGAATTTCATGATGTAAACTGTGAAGTAGTTGCAGTTTCAGTGGATTCCCACTTCAGTCATCTTGCCTGGATCAACACACCAAGAAAG gcagtggcctaaggcttgctatgtgccaggtctgattgtgtcctttgcagTACATTTGTGCGCCCAACAGAGGTTGTAGCTTTTAGTGACAAAGCT---GAATTCCATGACGTGATCTGTCAAGTGGTTACAGTTTCAGTTGACTCACACCTGAGTCACCTGGGG---ATCACCACACCAAGAAAAgtaagtttgctatcacctgtgcttacacctgtctacttcactgatgtgtg #### Prkg1_ID6495_12 --> 1 - 2 Original Alignment gCTGTACAGGACATTTAAAGACAGCAAATACTTGTATATGTTGATGGAAGCGTGCCTGGGTGGAGAGCTCTGGACTATTCTCAGGGATag attccccagttgtgcactttgtcctcctctttctcatctatcctttccaggCTGTACAGGACATTTAAAGACAGCAGAGACTTCTGCATGTTAATAGAAGTTTGCTTGGGTGGGGAGCTTTGGACTATTCTAAGGGATaagtaagattagtgaactgcacagtgaaaaaaagaatgtgataatgtgcctc Alignment from CESAR gCTGTACAGGACATTTAAAGACAGCAAATACTTGTATATGTTGATGGAAGCGTGCCTGGGTGGAGAGCTCTGGACTATTCTCAGGGATag attccccagttgtgcactttgtcctcctctttctcatctatcctttccaggCTGTACAGGACATTTAAAGACAGCAGAGACTTCTGCATGTTAATAGAAGTTTGCTTGGGTGGGGAGCTTTGGACTATTCTAAGGGATaagtaagattagtgaactgcacagtgaaaaaaagaatgtgataatgtgcctc Alignment from Spaln_aa2Genome GCTGTACAGGACATTTAAAGACAGCAAATACTTGTATATGTTGATGGAAGCGTGCCTGGGTGGAGAGCTCTGGACTATTCTCAGGGATAG attccccagttgtgcactttgtcctcctctttctcatctatcctttccagGCTGTACAGGACATTTAAAGACAGCAGAGACTTCTGCATGTTAATAGAAGTTTGCTTGGGTGGGGAGCTTTGGACTATTCTAAGGGATAAgtaagattagtgaactgcacagtgaaaaaaagaatgtgataatgtgcctc Alignment from Spaln_nt2Genome GCTGTACAGGACATTTAAAGACAGCAAATACTTGTATATGTTGATGGAAGCGTGCCTGGGTGGAGAGCTCTGGACTATTCTCAGGGATAG attccccagttgtgcactttgtcctcctctttctcatctatcctttccagGCTGTACAGGACATTTAAAGACAGCAGAGACTTCTGCATGTTAATAGAAGTTTGCTTGGGTGGGGAGCTTTGGACTATTCTAAGGGATAAgtaagattagtgaactgcacagtgaaaaaaagaatgtgataatgtgcctc Alignment from Pairagon GCTGTACAGGACATTTAAAGACAGCAAATACTTGTATATGTTGATGGAAGCGTGCCTGGGTGGAGAGCTCTGGACTATTCTCAGGGATAG attccccagttgtgcactttgtcctcctctttctcatctatcctttccagGCTGTACAGGACATTTAAAGACAGCAGAGACTTCTGCATGTTAATAGAAGTTTGCTTGGGTGGGGAGCTTTGGACTATTCTAAGGGATAAgtaagattagtgaactgcacagtgaaaaaaagaatgtgataatgtgcctc Alignment from Exonerate_protein2genome GCTGTACAGGACATTTAAAGACAGCAAATACTTGTATATGTTGATGGAAGCGTGCCTGGGTGGAGAGCTCTGGACTATTCTCAGGGATAG attccccagttgtgcactttgtcctcctctttctcatctatcctttccagGCTGTACAGGACATTTAAAGACAGCAGAGACTTCTGCATGTTAATAGAAGTTTGCTTGGGTGGGGAGCTTTGGACTATTCTAAGGGATAAgtaagattagtgaactgcacagtgaaaaaaagaatgtgataatgtgcctc Alignment from Exonerate_coding2genome GCTGTACAGGACATTTAAAGACAGCAAATACTTGTATATGTTGATGGAAGCGTGCCTGGGTGGAGAGCTCTGGACTATTCTCAGGGATAG attccccagttgtgcactttgtcctcctctttctcatctatcctttccagGCTGTACAGGACATTTAAAGACAGCAGAGACTTCTGCATGTTAATAGAAGTTTGCTTGGGTGGGGAGCTTTGGACTATTCTAAGGGATAAgtaagattagtgaactgcacagtgaaaaaaagaatgtgataatgtgcctc Alignment from GeneWise GCTGTACAGGACATTTAAAGACAGCAAATACTTGTATATGTTGATGGAAGCGTGCCTGGGTGGAGAGCTCTGGACTATTCTCAGGGAT-- attccccagttgtgcactttgtcctcctctttctcatctatcctttccagGCTGTACAGGACATTTAAAGACAGCAGAGACTTCTGCATGTTAATAGAAGTTTGCTTGGGTGGGGAGCTTTGGACTATTCTAAGGGATAAgtaagattagtgaactgcacagtgaaaaaaagaatgtgataatgtgcctc #### Prkg1_ID6496_11 --> 0 - 2 Original Alignment GTCCAGTTGAAAAGTGAAGAATCCAAAACATTTGCAATGAAGATCCTCAAGAAACGCCACATTGTGGACACCAGACAGCAGGAGCACATCCGCTCAGAGAAGCAGATCATGCAGGGGGCTCATTCTGACTTCATTGTGag taggcttcttgagattcatgttagcataatactctattttactatttcagGTCCAGTTGAAAAGTGAGGAATCCAAAACATTTGCAATGAAAATCCTCAAGAAACGCCACATTGTGGACACCAGACAGCAGGAGCACATTCGCTCCGAGAAGCAGGTCATGCAGGGTGCTCATTCTGACTTCATTGTAaggtagggttggttcttgttagtggttacatgaaggtcagggccgcaggcct Alignment from CESAR GTCCAGTTGAAAAGTGAAGAATCCAAAACATTTGCAATGAAGATCCTCAAGAAACGCCACATTGTGGACACCAGACAGCAGGAGCACATCCGCTCAGAGAAGCAGATCATGCAGGGGGCTCATTCTGACTTCATTGTGag taggcttcttgagattcatgttagcataatactctattttactatttcagGTCCAGTTGAAAAGTGAGGAATCCAAAACATTTGCAATGAAAATCCTCAAGAAACGCCACATTGTGGACACCAGACAGCAGGAGCACATTCGCTCCGAGAAGCAGGTCATGCAGGGTGCTCATTCTGACTTCATTGTAaggtagggttggttcttgttagtggttacatgaaggtcagggccgcaggcct Alignment from Spaln_aa2Genome GTCCAGTTGAAAAGTGAAGAATCCAAAACATTTGCAATGAAGATCCTCAAGAAACGCCACATTGTGGACACCAGACAGCAGGAGCACATCCGCTCAGAGAAGCAGATCATGCAGGGGGCTCATTCTGACTTCATTGTGAG taggcttcttgagattcatgttagcataatactctattttactatttcagGTCCAGTTGAAAAGTGAGGAATCCAAAACATTTGCAATGAAAATCCTCAAGAAACGCCACATTGTGGACACCAGACAGCAGGAGCACATTCGCTCCGAGAAGCAGGTCATGCAGGGTGCTCATTCTGACTTCATTGTAAGgtagggttggttcttgttagtggttacatgaaggtcagggccgcaggcct Alignment from Spaln_nt2Genome GTCCAGTTGAAAAGTGAAGAATCCAAAACATTTGCAATGAAGATCCTCAAGAAACGCCACATTGTGGACACCAGACAGCAGGAGCACATCCGCTCAGAGAAGCAGATCATGCAGGGGGCTCATTCTGACTTCATTGTGAG taggcttcttgagattcatgttagcataatactctattttactatttcagGTCCAGTTGAAAAGTGAGGAATCCAAAACATTTGCAATGAAAATCCTCAAGAAACGCCACATTGTGGACACCAGACAGCAGGAGCACATTCGCTCCGAGAAGCAGGTCATGCAGGGTGCTCATTCTGACTTCATTGTAAGgtagggttggttcttgttagtggttacatgaaggtcagggccgcaggcct Alignment from Pairagon GTCCAGTTGAAAAGTGAAGAATCCAAAACATTTGCAATGAAGATCCTCAAGAAACGCCACATTGTGGACACCAGACAGCAGGAGCACATCCGCTCAGAGAAGCAGATCATGCAGGGGGCTCATTCTGACTTCATTGTGAG taggcttcttgagattcatgttagcataatactctattttactatttcagGTCCAGTTGAAAAGTGAGGAATCCAAAACATTTGCAATGAAAATCCTCAAGAAACGCCACATTGTGGACACCAGACAGCAGGAGCACATTCGCTCCGAGAAGCAGGTCATGCAGGGTGCTCATTCTGACTTCATTGTAAGgtagggttggttcttgttagtggttacatgaaggtcagggccgcaggcct Alignment from Exonerate_protein2genome GTCCAGTTGAAAAGTGAAGAATCCAAAACATTTGCAATGAAGATCCTCAAGAAACGCCACATTGTGGACACCAGACAGCAGGAGCACATCCGCTCAGAGAAGCAGATCATGCAGGGGGCTCATTCTGACTTCATTGTGAG taggcttcttgagattcatgttagcataatactctattttactatttcagGTCCAGTTGAAAAGTGAGGAATCCAAAACATTTGCAATGAAAATCCTCAAGAAACGCCACATTGTGGACACCAGACAGCAGGAGCACATTCGCTCCGAGAAGCAGGTCATGCAGGGTGCTCATTCTGACTTCATTGTAAGgtagggttggttcttgttagtggttacatgaaggtcagggccgcaggcct Alignment from Exonerate_coding2genome GTCCAGTTGAAAAGTGAAGAATCCAAAACATTTGCAATGAAGATCCTCAAGAAACGCCACATTGTGGACACCAGACAGCAGGAGCACATCCGCTCAGAGAAGCAGATCATGCAGGGGGCTCATTCTGACTTCATTGTGAG taggcttcttgagattcatgttagcataatactctattttactatttcagGTCCAGTTGAAAAGTGAGGAATCCAAAACATTTGCAATGAAAATCCTCAAGAAACGCCACATTGTGGACACCAGACAGCAGGAGCACATTCGCTCCGAGAAGCAGGTCATGCAGGGTGCTCATTCTGACTTCATTGTAAGgtagggttggttcttgttagtggttacatgaaggtcagggccgcaggcct Alignment from GeneWise GTCCAGTTGAAAAGTGAAGAATCCAAAACATTTGCAATGAAGATCCTCAAGAAACGCCACATTGTGGACACCAGACAGCAGGAGCACATCCGCTCAGAGAAGCAGATCATGCAGGGGGCTCATTCTGACTTCATTGTGAG taggcttcttgagattcatgttagcataatactctattttactatttcagGTCCAGTTGAAAAGTGAGGAATCCAAAACATTTGCAATGAAAATCCTCAAGAAACGCCACATTGTGGACACCAGACAGCAGGAGCACATTCGCTCCGAGAAGCAGGTCATGCAGGGTGCTCATTCTGACTTCATTGTAAGgtagggttggttcttgttagtggttacatgaaggtcagggccgcaggcct #### Prpf19_ID3044_3 --> 2 - 0 Original Alignment ttGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA atgtgagaggttgcatgcaaggaatatgttttattatgttttcttcttagttGCACACCCAATTCGACCCAAGCCTCCCTCTGCGACCAGTATTCCAGCTATCCTAAAGGCCTTACAAGATGAGTGGgtaagtaaacttcccgtttgtctccctctgcagGATGCAGTCATGCTGCA Alignment from CESAR ttGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA atgtgagaggttgcatgcaaggaatatgttttattatgttttcttcttagttGCACACCCAATTCGACCCAAGCCTCCCTCTGCGACCAGTATTCCAGCTATCCTAAAGGCCTTACAAGATGAGTGGgtaagtaaacttcgatgttccctctccccacagGATGCAGTCATGCTGCA Alignment from Spaln_aa2Genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA atgtgagaggttgcatgcaaggaatatgttttattatgttttcttcttagTTGCACACCCAATTCGACCCAAGCCTCCCTCTGCGACCAGTATTCCAGCTATCCTAAAGGCCTTACAAGATGAGTGGgtaagtaaacttcccgtttgtctccctctgcagGATGCAGTCATGCTGCA Alignment from Spaln_nt2Genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA atgtgagaggttgcatgcaaggaatatgttttattatgttttcttcttagTTGCACACCCAATTCGACCCAAGCCTCCCTCTGCGACCAGTATTCCAGCTATCCTAAAGGCCTTACAAGATGAGTGGgtaagtaaacttcccgtttgtctccctctgcagGATGCAGTCATGCTGCA Alignment from Pairagon TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA atgtgagaggttgcatgcaaggaatatgttttattatgttttcttcttagTTGCACACCCAATTCGACCCAAGCCTCCCTCTGCGACCAGTATTCCAGCTATCCTAAAGGCCTTACAAGATGAGTGGgtaagtaaacttcccgtttgtctccctctgcagGATGCAGTCATGCTGCA Alignment from Exonerate_protein2genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA atgtgagaggttgcatgcaaggaatatgttttattatgttttcttcttagTTGCACACCCAATTCGACCCAAGCCTCCCTCTGCGACCAGTATTCCAGCTATCCTAAAGGCCTTACAAGATGAGTGGgtaagtaaacttcccgtttgtctccctctgcagGATGCAGTCATGCTGCA Alignment from Exonerate_coding2genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA atgtgagaggttgcatgcaaggaatatgttttattatgttttcttcttagTTGCACACCCAATTCGACCCAAGCCTCCCTCTGCGACCAGTATTCCAGCTATCCTAAAGGCCTTACAAGATGAGTGGgtaagtaaacttcccgtttgtctccctctgcagGATGCAGTCATGCTGCA Alignment from GeneWise TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG---------------------------------GATGCAGTCATGCTGCA atgtgagaggttgcatgcaaggaatatgttttattatgttttcttcttagTTGCACACCCAATTCGACCCAAGCCTCCCTCTGCGACCAGTATTCCAGCTATCCTAAAGGCCTTACAAGATGAGTGGGTAAGTAAACTTCCCGTTTGTCTCCCTCTGCAGGATGCAGTCATGCTGCA #### Prpf19_ID3045_4 --> 0 - 1 Original Alignment CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAg ctCTGGCTA CCTTACAAGATGAGTGGgtaatgaaacttcgatgttccctctccccacagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGACTACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAggtgagtctcattccactgttgtaaatgccttattcctgcagccTTGGCCA Alignment from CESAR CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAg ctCTGGCTA CCTTACAAGATGAGTGGgtaagtaaacttcgatgttccctctccccacagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGACTACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAggtgagtctcattccactgtcttgttaacttgctgtttctagccTTGGCCA Alignment from Spaln_aa2Genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CTCTGGCTA CCTTACAAGATGAGTGGgtaatgaaacttcgatgttccctctccccacagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGACTACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtgagtctcattccactgttgtaaatgccttattcctgcagCCTTGGCCA Alignment from Spaln_nt2Genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CTCTGGCTA CCTTACAAGATGAGTGGgtaatgaaacttcgatgttccctctccccacagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGACTACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtgagtctcattccactgttgtaaatgccttattcctgcagCCTTGGCCA Alignment from Pairagon CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CTCTGGCTA CCTTACAAGATGAGTGGgtaatgaaacttcgatgttccctctccccacagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGACTACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtgagtctcattccactgttgtaaatgccttattcctgcagCCTTGGCCA Alignment from Exonerate_protein2genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CTCTGGCTA CCTTACAAGATGAGTGGgtaatgaaacttcgatgttccctctccccacagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGACTACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtgagtctcattccactgttgtaaatgccttattcctgcagCCTTGGCCA Alignment from Exonerate_coding2genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CTCTGGCTA CCTTACAAGATGAGTGGgtaatgaaacttcgatgttccctctccccacagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGACTACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtgagtctcattccactgttgtaaatgccttattcctgcagCCTTGGCCA Alignment from GeneWise CCTTGCAGGATGAGTGG---------------------------------GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CTCTGGCTA CCTTACAAGATGAGTGGGTAATGAAACTTCGATGTTCCCTCTCCCCACAGGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGACTACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtgagtctcattccactgttgtaaatgccttattcctgcagCCTTGGCCA #### Ptar1_ID5194_4 --> 1 - 2 Original Alignment gAAAGAGCTCATCCTCTCTGGCACTTTAAGTCCAATTAAGGATCTGCATCTGGGAAAACTGGCCTTAACTAAGTTTCCTAAGAGTCCAGAGACATGGATTCACag caaacttttcgattataatagtggattttcttttccctccactcttacagaAAGGAGCTTATCCTGTCTGGCACCTTGAGCCCAATTAGGGATCTCCATCTGGGAAAGCTGGCCTTGACCAAATTTCCTAAGAGTCCAGAGACATGGATTCATaggtaaggttaatatgatgttttcctgtggccattatgagcatggggtttaa Alignment from CESAR gAAAGAGCTCATCCTCTCTGGCACTTTAAGTCCAATTAAGGATCTGCATCTGGGAAAACTGGCCTTAACTAAGTTTCCTAAGAGTCCAGAGACATGGATTCACag caaacttttcgattataatagtggattttcttttccctccactcttacagaAAGGAGCTTATCCTGTCTGGCACCTTGAGCCCAATTAGGGATCTCCATCTGGGAAAGCTGGCCTTGACCAAATTTCCTAAGAGTCCAGAGACATGGATTCATaggtaaggttaatatgatgttttcctgtggccattatgagcatggggtttaa Alignment from Spaln_aa2Genome GAAAGAGCTCATCCTCTCTGGCACTTTAAGTCCAATTAAGGATCTGCATCTGGGAAAACTGGCCTTAACTAAGTTTCCTAAGAGTCCAGAGACATGGATTCACAG caaacttttcgattataatagtggattttcttttccctccactcttacagAAAGGAGCTTATCCTGTCTGGCACCTTGAGCCCAATTAGGGATCTCCATCTGGGAAAGCTGGCCTTGACCAAATTTCCTAAGAGTCCAGAGACATGGATTCATAGgtaaggttaatatgatgttttcctgtggccattatgagcatggggtttaa Alignment from Spaln_nt2Genome GAAAGAGCTCATCCTCTCTGGCACTTTAAGTCCAATTAAGGATCTGCATCTGGGAAAACTGGCCTTAACTAAGTTTCCTAAGAGTCCAGAGACATGGATTCACAG caaacttttcgattataatagtggattttcttttccctccactcttacagAAAGGAGCTTATCCTGTCTGGCACCTTGAGCCCAATTAGGGATCTCCATCTGGGAAAGCTGGCCTTGACCAAATTTCCTAAGAGTCCAGAGACATGGATTCATAGgtaaggttaatatgatgttttcctgtggccattatgagcatggggtttaa Alignment from Pairagon GAAAGAGCTCATCCTCTCTGGCACTTTAAGTCCAATTAAGGATCTGCATCTGGGAAAACTGGCCTTAACTAAGTTTCCTAAGAGTCCAGAGACATGGATTCACAG caaacttttcgattataatagtggattttcttttccctccactcttacagAAAGGAGCTTATCCTGTCTGGCACCTTGAGCCCAATTAGGGATCTCCATCTGGGAAAGCTGGCCTTGACCAAATTTCCTAAGAGTCCAGAGACATGGATTCATAGgtaaggttaatatgatgttttcctgtggccattatgagcatggggtttaa Alignment from Exonerate_protein2genome GAAAGAGCTCATCCTCTCTGGCACTTTAAGTCCAATTAAGGATCTGCATCTGGGAAAACTGGCCTTAACTAAGTTTCCTAAGAGTCCAGAGACATGGATTCACAG caaacttttcgattataatagtggattttcttttccctccactcttacagAAAGGAGCTTATCCTGTCTGGCACCTTGAGCCCAATTAGGGATCTCCATCTGGGAAAGCTGGCCTTGACCAAATTTCCTAAGAGTCCAGAGACATGGATTCATAGgtaaggttaatatgatgttttcctgtggccattatgagcatggggtttaa Alignment from Exonerate_coding2genome GAAAGAGCTCATCCTCTCTGGCACTTTAAGTCCAATTAAGGATCTGCATCTGGGAAAACTGGCCTTAACTAAGTTTCCTAAGAGTCCAGAGACATGGATTCACAG caaacttttcgattataatagtggattttcttttccctccactcttacagAAAGGAGCTTATCCTGTCTGGCACCTTGAGCCCAATTAGGGATCTCCATCTGGGAAAGCTGGCCTTGACCAAATTTCCTAAGAGTCCAGAGACATGGATTCATAGgtaaggttaatatgatgttttcctgtggccattatgagcatggggtttaa Alignment from GeneWise GAAAGAGCTCATCCTCTCTGGCACTTTAAGTCCAATTAAGGATCTGCATCTGGGAAAACTGGCCTTAACTAAGTTTCCTAAGAGTCCAGAGACATGGATTCACAG caaacttttcgattataatagtggattttcttttccctccactcttacagAAAGGAGCTTATCCTGTCTGGCACCTTGAGCCCAATTAGGGATCTCCATCTGGGAAAGCTGGCCTTGACCAAATTTCCTAAGAGTCCAGAGACATGGATTCATAGgtaaggttaatatgatgttttcctgtggccattatgagcatggggtttaa #### Pten_ID6744_3 --> 1 - 2 Original Alignment gTTTTTGGATTCAAAGCATAAAAACCATTACAAGATATACAATct gctcatatttctaatactatctaatactttttctctgcctctcatttcagaTTCCTGGACTCAAAGTATAAAAATCATTACAAAGTATATAACctgtgaggtgtctcaaatagcgtgcataaataggctcttcatttttcaaaaa Alignment from CESAR gTTTTTGGATTCAAAGCATAAAAACCATTACAAGATATACAATct gctcatatttctaatactatctaatactttttctctgcctctcatttcagaTTCCTGGACTCAAAGTATAAAAATCATTACAAAGTATATAACctgtgaggtgtctcaaatagcgtgcataaataggctcttcatttttcaaaaa Alignment from Spaln_aa2Genome GTTTTTGGATTCAAAGCATAAAAACCATTACAAGATATACAATCT gctcatatttctaatactatctaatactttttctctgcctctcatttcagATTCCTGGACTCAAAGTATAAAAATCATTACAAAGTATATAACCTgtgaggtgtctcaaatagcgtgcataaataggctcttcatttttcaaaaa Alignment from Spaln_nt2Genome GTTTTTGGATTCAAAGCATAAAAACCATTACAAGATATACAATCT gctcatatttctaatactatctaatactttttctctgcctctcatttcagATTCCTGGACTCAAAGTATAAAAATCATTACAAAGTATATAACCTgtgaggtgtctcaaatagcgtgcataaataggctcttcatttttcaaaaa Alignment from Pairagon GTTTTTGGATTCAAAGCATAAAAACCATTACAAGATATACAATCT gctcatatttctaatactatctaatactttttctctgcctctcatttcagATTCCTGGACTCAAAGTATAAAAATCATTACAAAGTATATAACCTgtgaggtgtctcaaatagcgtgcataaataggctcttcatttttcaaaaa Alignment from Exonerate_protein2genome GTTTTTGGATTCAAAGCATAAAAACCATTACAAGATATACAATCT gctcatatttctaatactatctaatactttttctctgcctctcatttcagATTCCTGGACTCAAAGTATAAAAATCATTACAAAGTATATAACCTgtgaggtgtctcaaatagcgtgcataaataggctcttcatttttcaaaaa Alignment from Exonerate_coding2genome gctcatatttctaatactatctaatactttttctctgcctctcatttcagattcctggactcaaagtataaaaatcattacaaagtatataacctgtgaggtgtctcaaatagcgtgcataaataggctcttcatttttcaaaaa Alignment from GeneWise GTTTTTGGATTCAAAGCATAAAAACCATTACAAGATATACAATCT gctcatatttctaatactatctaatactttttctctgcctctcatttcagATTCCTGGACTCAAAGTATAAAAATCATTACAAAGTATATAACCTgtgaggtgtctcaaatagcgtgcataaataggctcttcatttttcaaaaa #### Pten_ID6749_7 --> 2 - 0 Original Alignment atCCTCAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCGGGAGGACAAGTTCATGTACTTTGAGTTCCCTCAGCCATTGCCTGTGTGTGGTGATATCAAAGTAGAGTTCTTCCACAAACAGAACAAGATGCTCAAAAAG gttgactagaccgagatgcaatttgattcccctccttgaacttgttacagatCCCCAGTTTGTGGTCTGCCAACTTAAGGTAAAGATATATTCCTCCAATTCAGGCCCCACGTGGCTGGATGACAAGTTAATGTACTTTGAGTTCCCTCAGCCATTGCCTGTATGTGGTGATATCAAAGTAGAGTTTATCCACAAGCGGAACAAGATGCTCAAAAGGgtgaggaacactttagggaatcaaaagggtgcccagcacttcagagaaat Alignment from CESAR atCCTCAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCGGGAGGACAAGTTCATGTACTTTGAGTTCCCTCAGCCATTGCCTGTGTGTGGTGATATCAAAGTAGAGTTCTTCCACAAACAGAACAAGATGCTCAAAAAG gttgactagaccgagatgcaatttgattcccctccttgaacttgttacagatCCCCAGTTTGTGGTCTGCCAACTTAAGGTAAAGATATATTCCTCCAATTCAGGCCCCACGTGGCTGGATGACAAGTTAATGTACTTTGAGTTCCCTCAGCCATTGCCTGTATGTGGTGATATCAAAGTAGAGTTTATCCACAAGCGGAACAAGATGCTCAAAAGGgtgaggaacactttagggaatcaaaagggtgcccagcacttcagagaaat Alignment from Spaln_aa2Genome ATCCTCAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCGGGAGGACAAGTTCATGTACTTTGAGTTCCCTCAGCCATTGCCTGTGTGTGGTGATATCAAAGTAGAGTTCTTCCACAAACAGAACAAGATGCTCAAAAAG gttgactagaccgagatgcaatttgattcccctccttgaacttgttacagATCCCCAGTTTGTGGTCTGCCAACTTAAGGTAAAGATATATTCCTCCAATTCAGGCCCCACGTGGCTGGATGACAAGTTAATGTACTTTGAGTTCCCTCAGCCATTGCCTGTATGTGGTGATATCAAAGTAGAGTTTATCCACAAGCGGAACAAGATGCTCAAAAGGgtgaggaacactttagggaatcaaaagggtgcccagcacttcagagaaat Alignment from Spaln_nt2Genome ATCCTCAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCGGGAGGACAAGTTCATGTACTTTGAGTTCCCTCAGCCATTGCCTGTGTGTGGTGATATCAAAGTAGAGTTCTTCCACAAACAGAACAAGATGCTCAAAAAG gttgactagaccgagatgcaatttgattcccctccttgaacttgttacagATCCCCAGTTTGTGGTCTGCCAACTTAAGGTAAAGATATATTCCTCCAATTCAGGCCCCACGTGGCTGGATGACAAGTTAATGTACTTTGAGTTCCCTCAGCCATTGCCTGTATGTGGTGATATCAAAGTAGAGTTTATCCACAAGCGGAACAAGATGCTCAAAAGGgtgaggaacactttagggaatcaaaagggtgcccagcacttcagagaaat Alignment from Pairagon ATCCTCAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCGGGAGGACAAGTTCATGTACTTTGAGTTCCCTCAGCCATTGCCTGTGTGTGGTGATATCAAAGTAGAGTTCTTCCACAAACAGAACAAGATGCTCAAAAAG gttgactagaccgagatgcaatttgattcccctccttgaacttgttacagATCCCCAGTTTGTGGTCTGCCAACTTAAGGTAAAGATATATTCCTCCAATTCAGGCCCCACGTGGCTGGATGACAAGTTAATGTACTTTGAGTTCCCTCAGCCATTGCCTGTATGTGGTGATATCAAAGTAGAGTTTATCCACAAGCGGAACAAGATGCTCAAAAGGgtgaggaacactttagggaatcaaaagggtgcccagcacttcagagaaat Alignment from Exonerate_protein2genome ATCCTCAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCGGGAGGACAAGTTCATGTACTTTGAGTTCCCTCAGCCATTGCCTGTGTGTGGTGATATCAAAGTAGAGTTCTTCCACAAACAGAACAAGATGCTCAAAAAG gttgactagaccgagatgcaatttgattcccctccttgaacttgttacagATCCCCAGTTTGTGGTCTGCCAACTTAAGGTAAAGATATATTCCTCCAATTCAGGCCCCACGTGGCTGGATGACAAGTTAATGTACTTTGAGTTCCCTCAGCCATTGCCTGTATGTGGTGATATCAAAGTAGAGTTTATCCACAAGCGGAACAAGATGCTCAAAAGGgtgaggaacactttagggaatcaaaagggtgcccagcacttcagagaaat Alignment from Exonerate_coding2genome ATCCTCAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCGGGAGGACAAGTTCATGTACTTTGAGTTCCCTCAGCCATTGCCTGTGTGTGGTGATATCAAAGTAGAGTTCTTCCACAAACAGAACAAGATGCTCAAAAAG gttgactagaccgagatgcaatttgattcccctccttgaacttgttacagATCCCCAGTTTGTGGTCTGCCAACTTAAGGTAAAGATATATTCCTCCAATTCAGGCCCCACGTGGCTGGATGACAAGTTAATGTACTTTGAGTTCCCTCAGCCATTGCCTGTATGTGGTGATATCAAAGTAGAGTTTATCCACAAGCGGAACAAGATGCTCAAAAGGgtgaggaacactttagggaatcaaaagggtgcccagcacttcagagaaat Alignment from GeneWise ATCCTCAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATATATTCCTCCAATTCAGGACCCACGCGGCGGGAGGACAAGTTCATGTACTTTGAGTTCCCTCAGCCATTGCCTGTGTGTGGTGATATCAAAGTAGAGTTCTTCCACAAACAGAACAAGATGCTCAAAAAG gttgactagaccgagatgcaatttgattcccctccttgaacttgttacagATCCCCAGTTTGTGGTCTGCCAACTTAAGGTAAAGATATATTCCTCCAATTCAGGCCCCACGTGGCTGGATGACAAGTTAATGTACTTTGAGTTCCCTCAGCCATTGCCTGTATGTGGTGATATCAAAGTAGAGTTTATCCACAAGCGGAACAAGATGCTCAAAAGGgtgaggaacactttagggaatcaaaagggtgcccagcacttcagagaaat #### Pygm_ID1682_6 --> 0 - 1 Original Alignment GTAGTGCTGGCTATGCCCTATGACACTCCTGTGCCCGGCTATCGGAACAACGTCGTCAACACCATGCGCCTCTGGTCGGCCAAGGCACCTAACGACTTCAACCTCAAGGACt ctcagaacttgtggtccttcagtgaagcttacgttaatcttcctgcctagGTAGTACTTGCTATGCCCTACGACACTCCTGTACCAGACTATCGGAACAATGTTGTCAACACTATGCGCCTCTGGTCATCCAAGGCACCTAATGACTTCAACCTCAAGGACtgtacagccatctcctccagtcaacactgggctgtttcttgaattatttgc Alignment from CESAR GTAGTGCTGGCTATGCCCTATGACACTCCTGTGCCCGGCTATCGGAACAACGTCGTCAACACCATGCGCCTCTGGTCGGCCAAGGCACCTAACGACTTCAACCTCAAGGACt ctcagaacttgtggtccttcagtgaagcttacgttaatcttcctgcctagGTAGTACTTGCTATGCCCTACGACACTCCTGTACCAGACTATCGGAACAATGTTGTCAACACTATGCGCCTCTGGTCATCCAAGGCACCTAATGACTTCAACCTCAAGGACtgtacagccatctcctccagtcaacactgggctggccctatgatgtgtcca Alignment from Spaln_aa2Genome GTAGTGCTGGCTATGCCCTATGACACTCCTGTGCCCGGCTATCGGAACAACGTCGTCAACACCATGCGCCTCTGGTCGGCCAAGGCACCTAACGACTTCAACCTCAAGGACT ctcagaacttgtggtccttcagtgaagcttacgttaatcttcctgcctagGTAGTACTTGCTATGCCCTACGACACTCCTGTACCAGACTATCGGAACAATGTTGTCAACACTATGCGCCTCTGGTCATCCAAGGCACCTAATGACTTCAACCTCAAGGACTgtacagccatctcctccagtcaacactgggctgtttcttgaattatttgc Alignment from Spaln_nt2Genome GTAGTGCTGGCTATGCCCTATGACACTCCTGTGCCCGGCTATCGGAACAACGTCGTCAACACCATGCGCCTCTGGTCGGCCAAGGCACCTAACGACTTCAACCTCAAGGACT ctcagaacttgtggtccttcagtgaagcttacgttaatcttcctgcctagGTAGTACTTGCTATGCCCTACGACACTCCTGTACCAGACTATCGGAACAATGTTGTCAACACTATGCGCCTCTGGTCATCCAAGGCACCTAATGACTTCAACCTCAAGGACTgtacagccatctcctccagtcaacactgggctgtttcttgaattatttgc Alignment from Pairagon GTAGTGCTGGCTATGCCCTATGACACTCCTGTGCCCGGCTATCGGAACAACGTCGTCAACACCATGCGCCTCTGGTCGGCCAAGGCACCTAACGACTTCAACCTCAAGGACT-------------------------------------------------- ctcagaacttgtggtccttcagtgaagcttacgttaatcttcctgcctagGTAGTACTTGCTATGCCCTACGACACTCCTGTACCAGACTATCGGAACAATGTTGTCAACACTATGCGCCTCTGGTCATCCAAGGCACCTAATGACTTCAACCTCAAGGACTGTACAGCCATCTCCTCCAGTCAACACTGGGCTGTTTCTTGAATTATTTGC Alignment from Exonerate_protein2genome GTAGTGCTGGCTATGCCCTATGACACTCCTGTGCCCGGCTATCGGAACAACGTCGTCAACACCATGCGCCTCTGGTCGGCCAAGGCACCTAACGACTTCAACCTCAAGGACT ctcagaacttgtggtccttcagtgaagcttacgttaatcttcctgcctagGTAGTACTTGCTATGCCCTACGACACTCCTGTACCAGACTATCGGAACAATGTTGTCAACACTATGCGCCTCTGGTCATCCAAGGCACCTAATGACTTCAACCTCAAGGACTgtacagccatctcctccagtcaacactgggctgtttcttgaattatttgc Alignment from Exonerate_coding2genome GTAGTGCTGGCTATGCCCTATGACACTCCTGTGCCCGGCTATCGGAACAACGTCGTCAACACCATGCGCCTCTGGTCGGCCAAGGCACCTAACGACTTCAACCTCAAGGACT ctcagaacttgtggtccttcagtgaagcttacgttaatcttcctgcctagGTAGTACTTGCTATGCCCTACGACACTCCTGTACCAGACTATCGGAACAATGTTGTCAACACTATGCGCCTCTGGTCATCCAAGGCACCTAATGACTTCAACCTCAAGGACTgtacagccatctcctccagtcaacactgggctgtttcttgaattatttgc Alignment from GeneWise GTAGTGCTGGCTATGCCCTATGACACTCCTGTGCCCGGCTATCGGAACAACGTCGTCAACACCATGCGCCTCTGGTCGGCCAAGGCACCTAACGACTTCAACCTCAAGGACT ctcagaacttgtggtccttcagtgaagcttacgttaatcttcctgcctagGTAGTACTTGCTATGCCCTACGACACTCCTGTACCAGACTATCGGAACAATGTTGTCAACACTATGCGCCTCTGGTCATCCAAGGCACCTAATGACTTCAACCTCAAGGACTgtacagccatctcctccagtcaacactgggctgtttcttgaattatttgc #### Pygm_ID1683_7 --> 2 - 0 Original Alignment tcAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT tgtccatctcctccagtcaacactgggctggccctatgatgtgtccacagtcAATGTTGGAGGGTACATCCTGTCTGTGTTAGACAGAAACCTATCTGAGAACATCTCCCGTGTACTATACCCCAATGATAATgtgaggtagcctacacccagaggaaataaacctaggaaacactgtacagc Alignment from CESAR tcAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT cagccatctcctccagtcaacactgggctggccctatgatgtgtccacagtcAATGTTGGAGGGTACATCCTGTCTGTGTTAGACAGAAACCTATCTGAGAACATCTCCCGTGTACTATACCCCAATGATAATgtgaggtagcctacacccagaggaaataaacctaggaaacactgtacagc Alignment from Spaln_aa2Genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT tgtccatctcctccagtcaacactgggctggccctatgatgtgtccacagTCAATGTTGGAGGGTACATCCTGTCTGTGTTAGACAGAAACCTATCTGAGAACATCTCCCGTGTACTATACCCCAATGATAATgtgaggtagcctacacccagaggaaataaacctaggaaacactgtacagc Alignment from Spaln_nt2Genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT tgtccatctcctccagtcaacactgggctggccctatgatgtgtccacagTCAATGTTGGAGGGTACATCCTGTCTGTGTTAGACAGAAACCTATCTGAGAACATCTCCCGTGTACTATACCCCAATGATAATgtgaggtagcctacacccagaggaaataaacctaggaaacactgtacagc Alignment from Pairagon TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT tgtccatctcctccagtcaacactgggctggccctatgatgtgtccacagTCAATGTTGGAGGGTACATCCTGTCTGTGTTAGACAGAAACCTATCTGAGAACATCTCCCGTGTACTATACCCCAATGATAATgtgaggtagcctacacccagaggaaataaacctaggaaacactgtacagc Alignment from Exonerate_protein2genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT tgtccatctcctccagtcaacactgggctggccctatgatgtgtccacagTCAATGTTGGAGGGTACATCCTGTCTGTGTTAGACAGAAACCTATCTGAGAACATCTCCCGTGTACTATACCCCAATGATAATgtgaggtagcctacacccagaggaaataaacctaggaaacactgtacagc Alignment from Exonerate_coding2genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT tgtccatctcctccagtcaacactgggctggccctatgatgtgtccacagTCAATGTTGGAGGGTACATCCTGTCTGTGTTAGACAGAAACCTATCTGAGAACATCTCCCGTGTACTATACCCCAATGATAATgtgaggtagcctacacccagaggaaataaacctaggaaacactgtacagc Alignment from GeneWise TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT tgtccatctcctccagtcaacactgggctggccctatgatgtgtccacagTCAATGTTGGAGGGTACATCCTGTCTGTGTTAGACAGAAACCTATCTGAGAACATCTCCCGTGTACTATACCCCAATGATAATgtgaggtagcctacacccagaggaaataaacctaggaaacactgtacagc #### Pygm_ID1684_8 --> 0 - 0 Original Alignment TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG agttgtgaccatctgacatgatatgatgcatgtctgtcacctccccacagTTCTTTGAAGGGAAGGAGCTGCGGCTTAAACAGGAGTACTTGGTGGTGGCTGCCAGCCTTCAAGACATCATCCGATGTTTCAAGTCCTCTAAGTTAGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtaccttctggttcaagttgttactttacccaccatctcacaatgtattt Alignment from CESAR TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG agttgtgaccatctgacatgatatgatgcatgtctgtcacctccccacagTTCTTTGAAGGGAAGGAGCTGCGGCTTAAACAGGAGTACTTGGTGGTGGCTGCCAGCCTTCAAGACATCATCCGATGTTTCAAGTCCTCTAAGTTAGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtaccttctggttcaagttgttactttacccaccatctcacaatgtattt Alignment from Spaln_aa2Genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG agttgtgaccatctgacatgatatgatgcatgtctgtcacctccccacagTTCTTTGAAGGGAAGGAGCTGCGGCTTAAACAGGAGTACTTGGTGGTGGCTGCCAGCCTTCAAGACATCATCCGATGTTTCAAGTCCTCTAAGTTAGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtaccttctggttcaagttgttactttacccaccatctcacaatgtattt Alignment from Spaln_nt2Genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG agttgtgaccatctgacatgatatgatgcatgtctgtcacctccccacagTTCTTTGAAGGGAAGGAGCTGCGGCTTAAACAGGAGTACTTGGTGGTGGCTGCCAGCCTTCAAGACATCATCCGATGTTTCAAGTCCTCTAAGTTAGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtaccttctggttcaagttgttactttacccaccatctcacaatgtattt Alignment from Pairagon TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG agttgtgaccatctgacatgatatgatgcatgtctgtcacctccccacagTTCTTTGAAGGGAAGGAGCTGCGGCTTAAACAGGAGTACTTGGTGGTGGCTGCCAGCCTTCAAGACATCATCCGATGTTTCAAGTCCTCTAAGTTAGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtaccttctggttcaagttgttactttacccaccatctcacaatgtattt Alignment from Exonerate_protein2genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG agttgtgaccatctgacatgatatgatgcatgtctgtcacctccccacagTTCTTTGAAGGGAAGGAGCTGCGGCTTAAACAGGAGTACTTGGTGGTGGCTGCCAGCCTTCAAGACATCATCCGATGTTTCAAGTCCTCTAAGTTAGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtaccttctggttcaagttgttactttacccaccatctcacaatgtattt Alignment from Exonerate_coding2genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG agttgtgaccatctgacatgatatgatgcatgtctgtcacctccccacagTTCTTTGAAGGGAAGGAGCTGCGGCTTAAACAGGAGTACTTGGTGGTGGCTGCCAGCCTTCAAGACATCATCCGATGTTTCAAGTCCTCTAAGTTAGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtaccttctggttcaagttgttactttacccaccatctcacaatgtattt Alignment from GeneWise TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG agttgtgaccatctgacatgatatgatgcatgtctgtcacctccccacagTTCTTTGAAGGGAAGGAGCTGCGGCTTAAACAGGAGTACTTGGTGGTGGCTGCCAGCCTTCAAGACATCATCCGATGTTTCAAGTCCTCTAAGTTAGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtaccttctggttcaagttgttactttacccaccatctcacaatgtattt #### Pygm_ID1688_12 --> 1 - 0 Original Alignment cTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG ccaaagcactgtttgtacactgggtactccgctccctcttgctcccacagtTTCCAAGACTTTTATCAGCTGGAGCCTCACAAGTTCCAAAACAAAAAAAATGGCATTACCCCTCGGCGCTGGCTTGTGCTATGTAACCCTGCACTTGTGGAGGTTATTGCAGAGgtaagggttaaaagggtaattaacgatactttcaggagcaatctcagatt Alignment from CESAR cTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG ccaaagcactgtttgtacactgggtactccgctccctcttgctcccacagtTTCCAAGACTTTTATCAGCTGGAGCCTCACAAGTTCCAAAACAAAAAAAATGGCATTACCCCTCGGCGCTGGCTTGTGCTATGTAACCCTGCACTTGTGGAGGTTATTGCAGAGgtaagggttaaaagggtaattaacgatactttcaggagcaatctcagatt Alignment from Spaln_aa2Genome CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG ccaaagcactgtttgtacactgggtactccgctccctcttgctcccacagTTTCCAAGACTTTTATCAGCTGGAGCCTCACAAGTTCCAAAACAAAAAAAATGGCATTACCCCTCGGCGCTGGCTTGTGCTATGTAACCCTGCACTTGTGGAGGTTATTGCAGAGgtaagggttaaaagggtaattaacgatactttcaggagcaatctcagatt Alignment from Spaln_nt2Genome CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG ccaaagcactgtttgtacactgggtactccgctccctcttgctcccacagTTTCCAAGACTTTTATCAGCTGGAGCCTCACAAGTTCCAAAACAAAAAAAATGGCATTACCCCTCGGCGCTGGCTTGTGCTATGTAACCCTGCACTTGTGGAGGTTATTGCAGAGgtaagggttaaaagggtaattaacgatactttcaggagcaatctcagatt Alignment from Pairagon CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG ccaaagcactgtttgtacactgggtactccgctccctcttgctcccacagTTTCCAAGACTTTTATCAGCTGGAGCCTCACAAGTTCCAAAACAAAAAAAATGGCATTACCCCTCGGCGCTGGCTTGTGCTATGTAACCCTGCACTTGTGGAGGTTATTGCAGAGgtaagggttaaaagggtaattaacgatactttcaggagcaatctcagatt Alignment from Exonerate_protein2genome CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG ccaaagcactgtttgtacactgggtactccgctccctcttgctcccacagTTTCCAAGACTTTTATCAGCTGGAGCCTCACAAGTTCCAAAACAAAAAAAATGGCATTACCCCTCGGCGCTGGCTTGTGCTATGTAACCCTGCACTTGTGGAGGTTATTGCAGAGgtaagggttaaaagggtaattaacgatactttcaggagcaatctcagatt Alignment from Exonerate_coding2genome CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG ccaaagcactgtttgtacactgggtactccgctccctcttgctcccacagTTTCCAAGACTTTTATCAGCTGGAGCCTCACAAGTTCCAAAACAAAAAAAATGGCATTACCCCTCGGCGCTGGCTTGTGCTATGTAACCCTGCACTTGTGGAGGTTATTGCAGAGgtaagggttaaaagggtaattaacgatactttcaggagcaatctcagatt Alignment from GeneWise CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG ccaaagcactgtttgtacactgggtactccgctccctcttgctcccacagTTTCCAAGACTTTTATCAGCTGGAGCCTCACAAGTTCCAAAACAAAAAAAATGGCATTACCCCTCGGCGCTGGCTTGTGCTATGTAACCCTGCACTTGTGGAGGTTATTGCAGAGgtaagggttaaaagggtaattaacgatactttcaggagcaatctcagatt #### Pygm_ID1689_13 --> 0 - 0 Original Alignment CGCATTGGTGAGGACTACATCTCAGACCTGGACCAGCTGCGCAAGCTGCTCTCCTATGTGGATGATGAAGCCTTTATCCGTGATGTGGCCAAAGTGAAACAG caagattgctggatttggggttttagtgcactttgtttgttgttctacagCGTACTGATCAGGACTATGTCTCGGAGTTAGACCAACCTCACAAGCTACTGTCCTATGTACATGATGAAGCCTTCATCCACGAAGTAGCCAGAGGCAAGTGGgtgtgtggtccctagtgggagagataaggttccaggcagactacacaata Alignment from CESAR CGCATTGGTGAGGACTACATCTCAGACCTGGACCAGCTGCGCAAGCTGCTCTCCTATGTGGATGATGAAGCCTTTATCCGTGATGTGGCCAAAGTGAAACAG caagattgctggatttggggttttagtgcactttgtttgttgttctacagCGTACTGATCAGGACTATGTCTCGGAGTTAGACCAACCTCACAAGCTACTGTCCTATGTACATGATGAAGCCTTCATCCACGAAGTAGCCAGAGGCAAGTGGgtgtgtggtccctagtgggagagataaggttccaggcagactacacaata Alignment from Spaln_aa2Genome CGCATTGGTGAGGACTACATCTCAGACCTGGACCAGCTGCGCAAGCTGCTCTCCTATGTGGATGATGAAGCCTTTATCCGTGATGTGGCCAAAGTGAAACAG caagattgctggatttggggttttagtgcactttgtttgttgttctacagCGTACTGATCAGGACTATGTCTCGGAGTTAGACCAACCTCACAAGCTACTGTCCTATGTACATGATGAAGCCTTCATCCACGAAGTAGCCAGAGGCAAGTGGgtgtgtggtccctagtgggagagataaggttccaggcagactacacaata Alignment from Spaln_nt2Genome CGCATTGGTGAGGACTACATCTCAGACCTGGACCAGCTGCGCAAGCTGCTCTCCTATGTGGATGATGAAGCCTTTATCCGTGATGTGGCCAAAGTGAAACAG caagattgctggatttggggttttagtgcactttgtttgttgttctacagCGTACTGATCAGGACTATGTCTCGGAGTTAGACCAACCTCACAAGCTACTGTCCTATGTACATGATGAAGCCTTCATCCACGAAGTAGCCAGAGGCAAGTGGgtgtgtggtccctagtgggagagataaggttccaggcagactacacaata Alignment from Pairagon CGCATTGGTGAGGACTACATCTCAGACCTGGACCAGCTGCGCAAGCTGCTCTCCTATGTGGATGATGAAGCCTTTATCCGTGATGTGGCCAAAG caagattgctggatttggggttttagtgcactttgtttgttgttctacagCGTACTGATCAGGACTATGTCTCGGAGTTAGACCAACCTCACAAGCTACTGTCCTATGTACATGATGAAGCCTTCATCCACGAAGTAGCCAGAGgcaagtgggtgtgtggtccctagtgggagagataaggttccaggcagactacacaata Alignment from Exonerate_protein2genome CGCATTGGTGAGGACTACATCTCAGACCTGGACCAGCTGCGCAAGCTGCTCTCCTATGTGGATGATGAAGCCTTTATCCGTGATGTGGCCAAAGTGAAACAG caagattgctggatttggggttttagtgcactttgtttgttgttctacagCGTACTGATCAGGACTATGTCTCGGAGTTAGACCAACCTCACAAGCTACTGTCCTATGTACATGATGAAGCCTTCATCCACGAAGTAGCCAGAGGCAAGTGGgtgtgtggtccctagtgggagagataaggttccaggcagactacacaata Alignment from Exonerate_coding2genome CGCATTGGTGAGGACTACATCTCAGACCTGGACCAGCTGCGCAAGCTGCTCTCCTATGTGGATGATGAAGCCTTTATCCGTGATGTGGCCAAAGTGAAACAG caagattgctggatttggggttttagtgcactttgtttgttgttctacagCGTACTGATCAGGACTATGTCTCGGAGTTAGACCAACCTCACAAGCTACTGTCCTATGTACATGATGAAGCCTTCATCCACGAAGTAGCCAGAGGCAAGTGGgtgtgtggtccctagtgggagagataaggttccaggcagactacacaata Alignment from GeneWise CGCATTGGTGAGGACTACATCTCAGACCTGGACCAGCTGCGCAAGCTGCTCTCCTATGTGGATGATGAAGCCTTTATCCGTGATGTGGCCAAAGTGAAACAG caagattgctggatttggggttttagtgcactttgtttgttgttctacagCGTACTGATCAGGACTATGTCTCGGAGTTAGACCAACCTCACAAGCTACTGTCCTATGTACATGATGAAGCCTTCATCCACGAAGTAGCCAGAGGCAAGTGGgtgtgtggtccctagtgggagagataaggttccaggcagactacacaata #### Pygm_ID1691_15 --> 2 - 0 Original Alignment gcATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG tccgagcattttcagagcaagagtaactaattgtgttctttgtttctaaggaATAAAAAGGGAGCTCAATCGGTTCATGGTGCCAAAGACTATCATGATTGGAGGGAAAgtgagtacagactgatgcatgaaaaaaggagattgatgcatgagaattaa Alignment from CESAR gcATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG tccgagcattttcagagcaagagtaactaattgtgttctttgtttctaaggaATAAAAAGGGAGCTCAATCGGTTCATGGTGCCAAAGACTATCATGATTGGAGGGAAAgtgagtacagactgatgcatgaaaaaaggagattgatgcatgagaattaa Alignment from Spaln_aa2Genome GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG tccgagcattttcagagcaagagtaactaattgtgttctttgtttctaagGAATAAAAAGGGAGCTCAATCGGTTCATGGTGCCAAAGACTATCATGATTGGAGGGAAAgtgagtacagactgatgcatgaaaaaaggagattgatgcatgagaattaa Alignment from Spaln_nt2Genome GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG tccgagcattttcagagcaagagtaactaattgtgttctttgtttctaagGAATAAAAAGGGAGCTCAATCGGTTCATGGTGCCAAAGACTATCATGATTGGAGGGAAAgtgagtacagactgatgcatgaaaaaaggagattgatgcatgagaattaa Alignment from Pairagon GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG tccgagcattttcagagcaagagtaactaattgtgttctttgtttctaagGAATAAAAAGGGAGCTCAATCGGTTCATGGTGCCAAAGACTATCATGATTGGAGGGAAAgtgagtacagactgatgcatgaaaaaaggagattgatgcatgagaattaa Alignment from Exonerate_protein2genome GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG tccgagcattttcagagcaagagtaactaattgtgttctttgtttctaagGAATAAAAAGGGAGCTCAATCGGTTCATGGTGCCAAAGACTATCATGATTGGAGGGAAAgtgagtacagactgatgcatgaaaaaaggagattgatgcatgagaattaa Alignment from Exonerate_coding2genome GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG tccgagcattttcagagcaagagtaactaattgtgttctttgtttctaagGAATAAAAAGGGAGCTCAATCGGTTCATGGTGCCAAAGACTATCATGATTGGAGGGAAAgtgagtacagactgatgcatgaaaaaaggagattgatgcatgagaattaa Alignment from GeneWise GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG tccgagcattttcagagcaagagtaactaattgtgttctttgtttctaagGAATAAAAAGGGAGCTCAATCGGTTCATGGTGCCAAAGACTATCATGATTGGAGGGAAAgtgagtacagactgatgcatgaaaaaaggagattgatgcatgagaattaa #### Pygm_ID1694_18 --> 1 - 2 Original Alignment gTACAATGCCCAGGAGTACTACGACCGAATTCCTGAGCTTCGGCAGATCATCGAACAGCTAAGCAGCGGCTTCTTCTCCCCCAAGCAGCCTGACCTGTTCAAGGACATTGTCAATATGCTCATGCACCATGACcg ctttgtatggggcagaatactagagttgctgaatgttgctttgttcttaggTACAATGCTAAGGAGTACTATGACCCAATACCTGAACTTCGCCAGATCATCAAACATTTGAGCAGTAGCTTCTTCTCCCCCAAACAGCCTGACTTGTTCAAAGATATCGTCAACATGCTTATACGCCATGACccgtaagttgtattccttttctgggttagacacaggcaatcatgcacacaga Alignment from CESAR gTACAATGCCCAGGAGTACTACGACCGAATTCCTGAGCTTCGGCAGATCATCGAACAGCTAAGCAGCGGCTTCTTCTCCCCCAAGCAGCCTGACCTGTTCAAGGACATTGTCAATATGCTCATGCACCATGACcg ctttgtatggggcagaatactagagttgctgaatgttgctttgttcttaggTACAATGCTAAGGAGTACTATGACCCAATACCTGAACTTCGCCAGATCATCAAACATTTGAGCAGTAGCTTCTTCTCCCCCAAACAGCCTGACTTGTTCAAAGATATCGTCAACATGCTTATACGCCATGACccgtaagttgtattccttttctgggttagacacaggcaatcatgcacacaga Alignment from Spaln_aa2Genome GTACAATGCCCAGGAGTACTACGACCGAATTCCTGAGCTTCGGCAGATCATCGAACAGCTAAGCAGCGGCTTCTTCTCCCCCAAGCAGCCTGACCTGTTCAAGGACATTGTCAATATGCTCATGCACCATGACCG ctttgtatggggcagaatactagagttgctgaatgttgctttgttcttagGTACAATGCTAAGGAGTACTATGACCCAATACCTGAACTTCGCCAGATCATCAAACATTTGAGCAGTAGCTTCTTCTCCCCCAAACAGCCTGACTTGTTCAAAGATATCGTCAACATGCTTATACGCCATGACCCgtaagttgtattccttttctgggttagacacaggcaatcatgcacacaga Alignment from Spaln_nt2Genome GTACAATGCCCAGGAGTACTACGACCGAATTCCTGAGCTTCGGCAGATCATCGAACAGCTAAGCAGCGGCTTCTTCTCCCCCAAGCAGCCTGACCTGTTCAAGGACATTGTCAATATGCTCATGCACCATGACCG ctttgtatggggcagaatactagagttgctgaatgttgctttgttcttagGTACAATGCTAAGGAGTACTATGACCCAATACCTGAACTTCGCCAGATCATCAAACATTTGAGCAGTAGCTTCTTCTCCCCCAAACAGCCTGACTTGTTCAAAGATATCGTCAACATGCTTATACGCCATGACCCgtaagttgtattccttttctgggttagacacaggcaatcatgcacacaga Alignment from Pairagon GTACAATGCCCAGGAGTACTACGACCGAATTCCTGAGCTTCGGCAGATCATCGAACAGCTAAGCAGCGGCTTCTTCTCCCCCAAGCAGCCTGACCTGTTCAAGGACATTGTCAATATGCTCATGCACCATGACCG ctttgtatggggcagaatactagagttgctgaatgttgctttgttcttagGTACAATGCTAAGGAGTACTATGACCCAATACCTGAACTTCGCCAGATCATCAAACATTTGAGCAGTAGCTTCTTCTCCCCCAAACAGCCTGACTTGTTCAAAGATATCGTCAACATGCTTATACGCCATGACCCgtaagttgtattccttttctgggttagacacaggcaatcatgcacacaga Alignment from Exonerate_protein2genome GTACAATGCCCAGGAGTACTACGACCGAATTCCTGAGCTTCGGCAGATCATCGAACAGCTAAGCAGCGGCTTCTTCTCCCCCAAGCAGCCTGACCTGTTCAAGGACATTGTCAATATGCTCATGCACCATGACCG ctttgtatggggcagaatactagagttgctgaatgttgctttgttcttagGTACAATGCTAAGGAGTACTATGACCCAATACCTGAACTTCGCCAGATCATCAAACATTTGAGCAGTAGCTTCTTCTCCCCCAAACAGCCTGACTTGTTCAAAGATATCGTCAACATGCTTATACGCCATGACCCgtaagttgtattccttttctgggttagacacaggcaatcatgcacacaga Alignment from Exonerate_coding2genome GTACAATGCCCAGGAGTACTACGACCGAATTCCTGAGCTTCGGCAGATCATCGAACAGCTAAGCAGCGGCTTCTTCTCCCCCAAGCAGCCTGACCTGTTCAAGGACATTGTCAATATGCTCATGCACCATGACCGGTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAG ctttgtatggggcagaatactagagttgctgaatgttgctttgttcttagGTACAATGCTAAGGAGTACTATGACCCAATACCTGAACTTCGCCAGATCATCAAACATTTGAGCAGTAGCTTCTTCTCCCCCAAACAGCCTGACTTGTTCAAAGATATCGTCAACATGCTTATACGCCATGACCCGTAAGTTGTATTCCTTTTCTGGGTTAGACACAGGCAATCATGCACACAGA Alignment from GeneWise GTACAATGCCCAGGAGTACTACGACCGAATTCCTGAGCTTCGGCAGATCATCGAACAGCTAAGCAGCGGCTTCTTCTCCCCCAAGCAGCCTGACCTGTTCAAGGACATTGTCAATATGCTCATGCACCATGACCG ctttgtatggggcagaatactagagttgctgaatgttgctttgttcttagGTACAATGCTAAGGAGTACTATGACCCAATACCTGAACTTCGCCAGATCATCAAACATTTGAGCAGTAGCTTCTTCTCCCCCAAACAGCCTGACTTGTTCAAAGATATCGTCAACATGCTTATACGCCATGACCCgtaagttgtattccttttctgggttagacacaggcaatcatgcacacaga #### Pyroxd2_ID8593_15 --> 0 - 1 Original Alignment AACATATTCCACGGTGCCATGTCCCTGGACCAGCTCTACTTTGCCCGTCCAGTGCCCCAACACTCTGACTACAGATGCCCAGTGCAGGGCCTGTACCTCTGTGGGAGTGGGGCCCATCCTg tataacatttctgtatctacatagcccttccttcttttttctttctccagAACATATTCCATGGTGCCATGTCCCTTGACCAGCTCTACTTTGCCTTCTCAGTACCCCAACACTTGGACTACAGATGCCCAGTGCATGGCCTCTACCTTTGTGGAACTGGGGCTCATCCTggtgagtgatcatccaatacatagaagatgttgaagagtcaatgtttgcaa Alignment from CESAR AACATATTCCACGGTGCCATGTCCCTGGACCAGCTCTACTTTGCCCGTCCAGTGCCCCAACACTCTGACTACAGATGCCCAGTGCAGGGCCTGTACCTCTGTGGGAGTGGGGCCCATCCTg tataacatttctgtatctacatagcccttccttcttttttctttctccagAACATATTCCATGGTGCCATGTCCCTTGACCAGCTCTACTTTGCCTTCTCAGTACCCCAACACTTGGACTACAGATGCCCAGTGCATGGCCTCTACCTTTGTGGAACTGGGGCTCATCCTggtgagtgatcatccaatacatagaagatgttgaagagtcaatgtttgcaa Alignment from Spaln_aa2Genome AACATATTCCACGGTGCCATGTCCCTGGACCAGCTCTACTTTGCCCGTCCAGTGCCCCAACACTCTGACTACAGATGCCCAGTGCAGGGCCTGTACCTCTGTGGGAGTGGGGCCCATCCTG tataacatttctgtatctacatagcccttccttcttttttctttctccagAACATATTCCATGGTGCCATGTCCCTTGACCAGCTCTACTTTGCCTTCTCAGTACCCCAACACTTGGACTACAGATGCCCAGTGCATGGCCTCTACCTTTGTGGAACTGGGGCTCATCCTGgtgagtgatcatccaatacatagaagatgttgaagagtcaatgtttgcaa Alignment from Spaln_nt2Genome AACATATTCCACGGTGCCATGTCCCTGGACCAGCTCTACTTTGCCCGTCCAGTGCCCCAACACTCTGACTACAGATGCCCAGTGCAGGGCCTGTACCTCTGTGGGAGTGGGGCCCATCCTG tataacatttctgtatctacatagcccttccttcttttttctttctccagAACATATTCCATGGTGCCATGTCCCTTGACCAGCTCTACTTTGCCTTCTCAGTACCCCAACACTTGGACTACAGATGCCCAGTGCATGGCCTCTACCTTTGTGGAACTGGGGCTCATCCTGgtgagtgatcatccaatacatagaagatgttgaagagtcaatgtttgcaa Alignment from Pairagon AACATATTCCACGGTGCCATGTCCCTGGACCAGCTCTACTTTGCCCGTCCAGTGCCCCAACACTCTGACTACAGATGCCCAGTGCAGGGCCTGTACCTCTGTGGGAGTGGGGCCCATCCTG tataacatttctgtatctacatagcccttccttcttttttctttctccagAACATATTCCATGGTGCCATGTCCCTTGACCAGCTCTACTTTGCCTTCTCAGTACCCCAACACTTGGACTACAGATGCCCAGTGCATGGCCTCTACCTTTGTGGAACTGGGGCTCATCCTGgtgagtgatcatccaatacatagaagatgttgaagagtcaatgtttgcaa Alignment from Exonerate_protein2genome AACATATTCCACGGTGCCATGTCCCTGGACCAGCTCTACTTTGCCCGTCCAGTGCCCCAACACTCTGACTACAGATGCCCAGTGCAGGGCCTGTACCTCTGTGGGAGTGGGGCCCATCCTG tataacatttctgtatctacatagcccttccttcttttttctttctccagAACATATTCCATGGTGCCATGTCCCTTGACCAGCTCTACTTTGCCTTCTCAGTACCCCAACACTTGGACTACAGATGCCCAGTGCATGGCCTCTACCTTTGTGGAACTGGGGCTCATCCTGgtgagtgatcatccaatacatagaagatgttgaagagtcaatgtttgcaa Alignment from Exonerate_coding2genome AACATATTCCACGGTGCCATGTCCCTGGACCAGCTCTACTTTGCCCGTCCAGTGCCCCAACACTCTGACTACAGATGCCCAGTGCAGGGCCTGTACCTCTGTGGGAGTGGGGCCCATCCTG tataacatttctgtatctacatagcccttccttcttttttctttctccagAACATATTCCATGGTGCCATGTCCCTTGACCAGCTCTACTTTGCCTTCTCAGTACCCCAACACTTGGACTACAGATGCCCAGTGCATGGCCTCTACCTTTGTGGAACTGGGGCTCATCCTGgtgagtgatcatccaatacatagaagatgttgaagagtcaatgtttgcaa Alignment from GeneWise AACATATTCCACGGTGCCATGTCCCTGGACCAGCTCTACTTTGCCCGTCCAGTGCCCCAACACTCTGACTACAGATGCCCAGTGCAGGGCCTGTACCTCTGTGGGAGTGGGGCCCATCCTG tataacatttctgtatctacatagcccttccttcttttttctttctccagAACATATTCCATGGTGCCATGTCCCTTGACCAGCTCTACTTTGCCTTCTCAGTACCCCAACACTTGGACTACAGATGCCCAGTGCATGGCCTCTACCTTTGTGGAACTGGGGCTCATCCTGgtgagtgatcatccaatacatagaagatgttgaagagtcaatgtttgcaa #### Pyroxd2_ID8596_12 --> 2 - 2 Original Alignment tgGCTGTGGACAGGCTGCCAAACTTCCAGGCGGCCCCTAATGCTCCCGGGGACCAGCCCCAAGGTCACCATCAGTGTTCCATCCACCTGAACTGTGAAGACACCCTGCTCCTCCACCAGGCCTTTGAAGATGCCAAGGGTGGCCTGCCTTCCCAAaa caggcagctgggctgctgggcaacctaactgagacagtctctccccacagtgGCTGTAGACAGGCTGCCAAATTTTCAAGCAGCCCCAAATGCTCCCGGGGATCATCCCCAGGGTCACCACCAGTGTTCTATCCATCTAAACTGTGAAGAGACTTTTCTCCTCCATCAAGCTTTTCAAGATACCAAAGGTGGGCTACCATCCCAGaagtaagggttgtgatgcctgttattttacgccagtaaactcaccaccaggt Alignment from CESAR tgGCTGTGGACAGGCTGCCAAACTTCCAGGCGGCCCCTAATGCTCCCGGGGACCAGCCCCAAGGTCACCATCAGTGTTCCATCCACCTGAACTGTGAAGACACCCTGCTCCTCCACCAGGCCTTTGAAGATGCCAAGGGTGGCCTGCCTTCCCAAaa caggcagctgggctgctgggcaacctaactgagacagtctctccccacagtgGCTGTAGACAGGCTGCCAAATTTTCAAGCAGCCCCAAATGCTCCCGGGGATCATCCCCAGGGTCACCACCAGTGTTCTATCCATCTAAACTGTGAAGAGACTTTTCTCCTCCATCAAGCTTTTCAAGATACCAAAGGTGGGCTACCATCCCAGaagtaagggttgtgatgcctgttattttacgccagtaaactcaccaccaggt Alignment from Spaln_aa2Genome TGGCTGTGGACAGGCTGCCAAACTTCCAGGCGGCCCCTAATGCTCCCGGGGACCAGCCCCAAGGTCACCATCAGTGTTCCATCCACCTGAACTGTGAAGACACCCTGCTCCTCCACCAGGCCTTTGAAGATGCCAAGGGTGGCCTGCCTTCCCAAAA caggcagctgggctgctgggcaacctaactgagacagtctctccccacagTGGCTGTAGACAGGCTGCCAAATTTTCAAGCAGCCCCAAATGCTCCCGGGGATCATCCCCAGGGTCACCACCAGTGTTCTATCCATCTAAACTGTGAAGAGACTTTTCTCCTCCATCAAGCTTTTCAAGATACCAAAGGTGGGCTACCATCCCAGAAgtaagggttgtgatgcctgttattttacgccagtaaactcaccaccaggt Alignment from Spaln_nt2Genome TGGCTGTGGACAGGCTGCCAAACTTCCAGGCGGCCCCTAATGCTCCCGGGGACCAGCCCCAAGGTCACCATCAGTGTTCCATCCACCTGAACTGTGAAGACACCCTGCTCCTCCACCAGGCCTTTGAAGATGCCAAGGGTGGCCTGCCTTCCCAAAA caggcagctgggctgctgggcaacctaactgagacagtctctccccacagTGGCTGTAGACAGGCTGCCAAATTTTCAAGCAGCCCCAAATGCTCCCGGGGATCATCCCCAGGGTCACCACCAGTGTTCTATCCATCTAAACTGTGAAGAGACTTTTCTCCTCCATCAAGCTTTTCAAGATACCAAAGGTGGGCTACCATCCCAGAAgtaagggttgtgatgcctgttattttacgccagtaaactcaccaccaggt Alignment from Pairagon TGGCTGTGGACAGGCTGCCAAACTTCCAGGCGGCCCCTAATGCTCCCGGGGACCAGCCCCAAGGTCACCATCAGTGTTCCATCCACCTGAACTGTGAAGACACCCTGCTCCTCCACCAGGCCTTTGAAGATGCCAAGGGTGGCCTGCCTTCCCAAAA caggcagctgggctgctgggcaacctaactgagacagtctctccccacagTGGCTGTAGACAGGCTGCCAAATTTTCAAGCAGCCCCAAATGCTCCCGGGGATCATCCCCAGGGTCACCACCAGTGTTCTATCCATCTAAACTGTGAAGAGACTTTTCTCCTCCATCAAGCTTTTCAAGATACCAAAGGTGGGCTACCATCCCAGAAgtaagggttgtgatgcctgttattttacgccagtaaactcaccaccaggt Alignment from Exonerate_protein2genome TGGCTGTGGACAGGCTGCCAAACTTCCAGGCGGCCCCTAATGCTCCCGGGGACCAGCCCCAAGGTCACCATCAGTGTTCCATCCACCTGAACTGTGAAGACACCCTGCTCCTCCACCAGGCCTTTGAAGATGCCAAGGGTGGCCTGCCTTCCCAAAA caggcagctgggctgctgggcaacctaactgagacagtctctccccacagTGGCTGTAGACAGGCTGCCAAATTTTCAAGCAGCCCCAAATGCTCCCGGGGATCATCCCCAGGGTCACCACCAGTGTTCTATCCATCTAAACTGTGAAGAGACTTTTCTCCTCCATCAAGCTTTTCAAGATACCAAAGGTGGGCTACCATCCCAGAAgtaagggttgtgatgcctgttattttacgccagtaaactcaccaccaggt Alignment from Exonerate_coding2genome TGGCTGTGGACAGGCTGCCAAACTTCCAGGCGGCCCCTAATGCTCCCGGGGACCAGCCCCAAGGTCACCATCAGTGTTCCATCCACCTGAACTGTGAAGACACCCTGCTCCTCCACCAGGCCTTTGAAGATGCCAAGGGTGGCCTGCCTTCCCAAAA caggcagctgggctgctgggcaacctaactgagacagtctctccccacagTGGCTGTAGACAGGCTGCCAAATTTTCAAGCAGCCCCAAATGCTCCCGGGGATCATCCCCAGGGTCACCACCAGTGTTCTATCCATCTAAACTGTGAAGAGACTTTTCTCCTCCATCAAGCTTTTCAAGATACCAAAGGTGGGCTACCATCCCAGAAgtaagggttgtgatgcctgttattttacgccagtaaactcaccaccaggt Alignment from GeneWise TGGCTGTGGACAGGCTGCCAAACTTCCAGGCGGCCCCTAATGCTCCCGGGGACCAGCCCCAAGGTCACCATCAGTGTTCCATCCACCTGAACTGTGAAGACACCCTGCTCCTCCACCAGGCCTTTGAAGATGCCAAGGGTGGCCTGCCTTCCCAAAA caggcagctgggctgctgggcaacctaactgagacagtctctccccacagTGGCTGTAGACAGGCTGCCAAATTTTCAAGCAGCCCCAAATGCTCCCGGGGATCATCCCCAGGGTCACCACCAGTGTTCTATCCATCTAAACTGTGAAGAGACTTTTCTCCTCCATCAAGCTTTTCAAGATACCAAAGGTGGGCTACCATCCCAGAAgtaagggttgtgatgcctgttattttacgccagtaaactcaccaccaggt #### Pyroxd2_ID8603_5 --> 0 - 0 Original Alignment AAACACGGGCTGAAACTTCATCTGAGAGACCCCTACTCCTTCACCCCCATGCTGGAAGAGGGCACACTGAACAGGCTGCCCAGGTCCCTTCTGCTGGGCACAGATATGGCTGCAAACCAGAAGGAAATCTCTCAGTTCTCACGGAAGGATGCTCAG aaaagctactaaatcatgggccactcagtaaatgtttccttctggctcagAAACATGGACTGAAACTTCATTTACGAGATCCATACTCTTTTACACCCATGGTAGAGGAGGGCACCCTCAATAGGTTGCCTAGATCACTCCTACTCGGTACAGACATGGCCGCAAACCAGGAAGAAATTTCTCAGTTCTCACAAAAGGATGCACAGgtgagtggagtacacaaaccaggaagaaatctctcagttctcacaaaagg Alignment from CESAR AAACACGGGCTGAAACTTCATCTGAGAGACCCCTACTCCTTCACCCCCATGCTGGAAGAGGGCACACTGAACAGGCTGCCCAGGTCCCTTCTGCTGGGCACAGATATGGCTGCAAACCAGAAGGAAATCTCTCAGTTCTCACGGAAGGATGCTCAG aaaagctactaaatcatgggccactcagtaaatgtttccttctggctcagAAACATGGACTGAAACTTCATTTACGAGATCCATACTCTTTTACACCCATGGTAGAGGAGGGCACCCTCAATAGGTTGCCTAGATCACTCCTACTCGGTACAGACATGGCCGCAAACCAGGAAGAAATTTCTCAGTTCTCACAAAAGGATGCACAGgtgagtggagtacacaaaccaggaagaaatctctcagttctcacaaaagg Alignment from Spaln_aa2Genome AAACACGGGCTGAAACTTCATCTGAGAGACCCCTACTCCTTCACCCCCATGCTGGAAGAGGGCACACTGAACAGGCTGCCCAGGTCCCTTCTGCTGGGCACAGATATGGCTGCAAACCAGAAGGAAATCTCTCAGTTCTCACGGAAGGATGCTCAG aaaagctactaaatcatgggccactcagtaaatgtttccttctggctcagAAACATGGACTGAAACTTCATTTACGAGATCCATACTCTTTTACACCCATGGTAGAGGAGGGCACCCTCAATAGGTTGCCTAGATCACTCCTACTCGGTACAGACATGGCCGCAAACCAGGAAGAAATTTCTCAGTTCTCACAAAAGGATGCACAGgtgagtggagtacacaaaccaggaagaaatctctcagttctcacaaaagg Alignment from Spaln_nt2Genome AAACACGGGCTGAAACTTCATCTGAGAGACCCCTACTCCTTCACCCCCATGCTGGAAGAGGGCACACTGAACAGGCTGCCCAGGTCCCTTCTGCTGGGCACAGATATG GCTGCAAACCAGAAGGAAATCTCTCAGTTCTCACGGAAGG aaaagctactaaatcatgggccactcagtaaatgtttccttctggctcagAAACATGGACTGAAACTTCATTTACGAGATCCATACTCTTTTACACCCATGGTAGAGGAGGGCACCCTCAATAGGTTGCCTAGATCACTCCTACTCGGTACAGACATGgccgcaaaccaggaagaaatttctcagttctcacaaaaggatgcacaggtgagtggagTACACAAACCAGGAAGAAATCTCTCAGTTCTCACAAAAGG Alignment from Pairagon AAACACGGGCTGAAACTTCATCTGAGAGACCCCTACTCCTTCACCCCCATGCTGGAAGAGGGCACACTGAACAGGCTGCCCAGGTCCCTTCTGCTGGGCACAGATATGGCTGCAAACCAGAAGGAAATCTCTCAGTTCTCACGGAAGGATGCTCAG aaaagctactaaatcatgggccactcagtaaatgtttccttctggctcagAAACATGGACTGAAACTTCATTTACGAGATCCATACTCTTTTACACCCATGGTAGAGGAGGGCACCCTCAATAGGTTGCCTAGATCACTCCTACTCGGTACAGACATGGCCGCAAACCAGGAAGAAATTTCTCAGTTCTCACAAAAGGATGCACAGgtgagtggagtacacaaaccaggaagaaatctctcagttctcacaaaagg Alignment from Exonerate_protein2genome AAACACGGGCTGAAACTTCATCTGAGAGACCCCTACTCCTTCACCCCCATGCTGGAAGAGGGCACACTGAACAGGCTGCCCAGGTCCCTTCTGCTGGGCACAGATATGGCTGCAAACCAGAAGGAAATCTCTCAGTTCTCACGGAAGGATGCTCAG aaaagctactaaatcatgggccactcagtaaatgtttccttctggctcagAAACATGGACTGAAACTTCATTTACGAGATCCATACTCTTTTACACCCATGGTAGAGGAGGGCACCCTCAATAGGTTGCCTAGATCACTCCTACTCGGTACAGACATGGCCGCAAACCAGGAAGAAATTTCTCAGTTCTCACAAAAGGATGCACAGgtgagtggagtacacaaaccaggaagaaatctctcagttctcacaaaagg Alignment from Exonerate_coding2genome CTGGAGCTGAAGAAACACGGGCTGAAACTTCATCTGAGAGACCCCTACTCCTTCACCCCCATGCTGGAAGAGGGCACACTGAACAGGCTGCCCAGGTCCCTTCTGCTGGGCACAGATATGGCTGCAAACCAGAAGGAAATCTCTCAGTTCTCACGGAAGGATGCTCAG aaaagctactaaatcatgggccactcagtaaatgtttcCTTCTGGCTCAGAAACATGGACTGAAACTTCATTTACGAGATCCATACTCTTTTACACCCATGGTAGAGGAGGGCACCCTCAATAGGTTGCCTAGATCACTCCTACTCGGTACAGACATGGCCGCAAACCAGGAAGAAATTTCTCAGTTCTCACAAAAGGATGCACAGgtgagtggagtacacaaaccaggaagaaatctctcagttctcacaaaagg Alignment from GeneWise AAACACGGGCTGAAACTTCATCTGAGAGACCCCTACTCCTTCACCCCCATGCTGGAAGAGGGCACACTGAACAGGCTGCCCAGGTCCCTTCTGCTGGGCACAGATATGGCTGCAAACCAGAAGGAAATCTCTCAGTTCTCACGGAAGGATGCTCAG aaaagctactaaatcatgggccactcagtaaatgtttccttctggctcagAAACATGGACTGAAACTTCATTTACGAGATCCATACTCTTTTACACCCATGGTAGAGGAGGGCACCCTCAATAGGTTGCCTAGATCACTCCTACTCGGTACAGACATGGCCGCAAACCAGGAAGAAATTTCTCAGTTCTCACAAAAGGATGCACAGgtgagtggagtacacaaaccaggaagaaatctctcagttctcacaaaagg #### R3hcc1l_ID8548_2 --> 0 - 2 Original Alignment TTATCTGGGAATGTGAAGAACAGAAAAAGCATCCAGGAGCCTAGATTTGATTATTACAGCCATGAACTTCCTGATATTGACCTCAGTGAATGTGAATTCCCACATGTCATTGAAATTTATGATTTT---CCTCAAGAATTTCGTACAGAAGACCTTTTGCGGATTTTCTGCAGTTACca gaagctcggtgatttgattctttttatgcagtgaggctttctttttccagTTATCGGGGAATGTAAAAAACCGGAAGAGGATTCATGAGCCTAGGTTTGACTATTTTAGCCATGAACTACCTGACATAGACTGCAGTGAATGTGAATTCCCATATGTCATTGAAATATATGATTTTGTTCCTCAGGATTTTCGTACAGAAGACCTCCTGCAGATATTTTGCAGCTACcagtaagtatcaccatccctgccatatgataccatttcagggtgagcaagga Alignment from CESAR TTATCTGGGAATGTGAAGAACAGAAAAAGCATCCAGGAGCCTAGATTTGATTATTACAGCCATGAACTTCCTGATATTGACCTCAGTGAATGTGAATTCCCACATGTCATTGAAATTTATGATTTT---CCTCAAGAATTTCGTACAGAAGACCTTTTGCGGATTTTCTGCAGTTACca gaagctcggtgatttgattctttttatgcagtgaggctttctttttccagTTATCGGGGAATGTAAAAAACCGGAAGAGGATTCATGAGCCTAGGTTTGACTATTTTAGCCATGAACTACCTGACATAGACTGCAGTGAATGTGAATTCCCATATGTCATTGAAATATATGATTTTGTTCCTCAGGATTTTCGTACAGAAGACCTCCTGCAGATATTTTGCAGCTACcagtaagtatcaccatccctgccatatgataccatttcagggtgagcaagga Alignment from Spaln_aa2Genome TTATCTGGGAATGTGAAGAACAGAAAAAGCATCCAGGAGCCTAGATTTGATTATTACAGCCATGAACTTCCTGATATTGACCTCAGTGAATGTGAATTCCCACATGTCATTGAAATTTATGATTTT---CCTCAAGAATTTCGTACAGAAGACCTTTTGCGGATTTTCTGCAGTTACCA gaagctcggtgatttgattctttttatgcagtgaggctttctttttccagTTATCGGGGAATGTAAAAAACCGGAAGAGGATTCATGAGCCTAGGTTTGACTATTTTAGCCATGAACTACCTGACATAGACTGCAGTGAATGTGAATTCCCATATGTCATTGAAATATATGATTTTGTTCCTCAGGATTTTCGTACAGAAGACCTCCTGCAGATATTTTGCAGCTACCAgtaagtatcaccatccctgccatatgataccatttcagggtgagcaagga Alignment from Spaln_nt2Genome TTATCTGGGAATGTGAAGAACAGAAAAAGCATCCAGGAGCCTAGATTTGATTATTACAGCCATGAACTTCCTGATATTGACCTCAGTGAATGTGAATTCCCACATGTCATTGAAATTTATGATTTT---CCTCAAGAATTTCGTACAGAAGACCTTTTGCGGATTTTCTGCAGTTACCA gaagctcggtgatttgattctttttatgcagtgaggctttctttttccagTTATCGGGGAATGTAAAAAACCGGAAGAGGATTCATGAGCCTAGGTTTGACTATTTTAGCCATGAACTACCTGACATAGACTGCAGTGAATGTGAATTCCCATATGTCATTGAAATATATGATTTTGTTCCTCAGGATTTTCGTACAGAAGACCTCCTGCAGATATTTTGCAGCTACCAgtaagtatcaccatccctgccatatgataccatttcagggtgagcaagga Alignment from Pairagon TTATCTGGGAATGTGAAGAACAGAAAAAGCATCCAGGAGCCTAGATTTGATTATTACAGCCATGAACTTCCTGATATTGACCTCAGTGAATGTGAATTCCCACATGTCATTGAAATTTATGATT---TTCCTCAAGAATTTCGTACAGAAGACCTTTTGCGGATTTTCTGCAGTTACCA gaagctcggtgatttgattctttttatgcagtgaggctttctttttccagTTATCGGGGAATGTAAAAAACCGGAAGAGGATTCATGAGCCTAGGTTTGACTATTTTAGCCATGAACTACCTGACATAGACTGCAGTGAATGTGAATTCCCATATGTCATTGAAATATATGATTTTGTTCCTCAGGATTTTCGTACAGAAGACCTCCTGCAGATATTTTGCAGCTACCAgtaagtatcaccatccctgccatatgataccatttcagggtgagcaagga Alignment from Exonerate_protein2genome TTATCTGGGAATGTGAAGAACAGAAAAAGCATCCAGGAGCCTAGATTTGATTATTACAGCCATGAACTTCCTGATATTGACCTCAGTGAATGTGAATTCCCACATGTCATTGAAATTTATGATTTT---CCTCAAGAATTTCGTACAGAAGACCTTTTGCGGATTTTCTGCAGTTACCA gaagctcggtgatttgattctttttatgcagtgaggctttctttttccagTTATCGGGGAATGTAAAAAACCGGAAGAGGATTCATGAGCCTAGGTTTGACTATTTTAGCCATGAACTACCTGACATAGACTGCAGTGAATGTGAATTCCCATATGTCATTGAAATATATGATTTTGTTCCTCAGGATTTTCGTACAGAAGACCTCCTGCAGATATTTTGCAGCTACCAgtaagtatcaccatccctgccatatgataccatttcagggtgagcaagga Alignment from Exonerate_coding2genome TTATCTGGGAATGTGAAGAACAGAAAAAGCATCCAGGAGCCTAGATTTGATTATTACAGCCATGAACTTCCTGATATTGACCTCAGTGAATGTGAATTCCCACATGTCATTGAAATTTATGATTTT---CCTCAAGAATTTCGTACAGAAGACCTTTTGCGGATTTTCTGCAGTTACCA gaagctcggtgatttgattctttttatgcagtgaggctttctttttccagTTATCGGGGAATGTAAAAAACCGGAAGAGGATTCATGAGCCTAGGTTTGACTATTTTAGCCATGAACTACCTGACATAGACTGCAGTGAATGTGAATTCCCATATGTCATTGAAATATATGATTTTGTTCCTCAGGATTTTCGTACAGAAGACCTCCTGCAGATATTTTGCAGCTACCAgtaagtatcaccatccctgccatatgataccatttcagggtgagcaagga Alignment from GeneWise TTATCTGGGAATGTGAAGAACAGAAAAAGCATCCAGGAGCCTAGATTTGATTATTACAGCCATGAACTTCCTGATATTGACCTCAGTGAATGTGAATTCCCACATGTCATTGAAATTTATGATTTT---CCTCAAGAATTTCGTACAGAAGACCTTTTGCGGATTTTCTGCAGTTACCA gaagctcggtgatttgattctttttatgcagtgaggctttctttttccagTTATCGGGGAATGTAAAAAACCGGAAGAGGATTCATGAGCCTAGGTTTGACTATTTTAGCCATGAACTACCTGACATAGACTGCAGTGAATGTGAATTCCCATATGTCATTGAAATATATGATTTTGTTCCTCAGGATTTTCGTACAGAAGACCTCCTGCAGATATTTTGCAGCTACCAgtaagtatcaccatccctgccatatgataccatttcagggtgagcaagga #### Rab11fip2_ID13100_4 --> 1 - 0 Original Alignment tTTTCATGTGAATCCAACAAGCAGTGAAGACCTCAGGAAAATCCCG tgcatgaagcaatcaggatgggagtacatgtcccacccttcctcccttagcTTTCATGTGAATCCAACAAGTAGTGAAGATCTTAGAAAAATCCCAgtgagcttcaccaagaaatagttcatatgaagatgccactttttttccat Alignment from CESAR tTTTCATGTGAATCCAACAAGCAGTGAAGACCTCAGGAAAATCCCG tgcatgaagcaatcaggatgggagtacatgtcccacccttcctcccttagcTTTCATGTGAATCCAACAAGTAGTGAAGATCTTAGAAAAATCCCAgtgagcttcaccaagaaatagttcatatgaagatgccactttttttccat Alignment from Spaln_aa2Genome TTTTCATGTGAATCCAACAAGCAGTGAAGACCTCAGGAAAATCCCG tgcatgaagcaatcaggatgggagtacatgtcccacccttcctcccttagCTTTCATGTGAATCCAACAAGTAGTGAAGATCTTAGAAAAATCCCAgtgagcttcaccaagaaatagttcatatgaagatgccactttttttccat Alignment from Spaln_nt2Genome TTTTCATGTGAATCCAACAAGCAGTGAAGACCTCAGGAAAATCCCG tgcatgaagcaatcaggatgggagtacatgtcccacccttcctcccttagCTTTCATGTGAATCCAACAAGTAGTGAAGATCTTAGAAAAATCCCAgtgagcttcaccaagaaatagttcatatgaagatgccactttttttccat Alignment from Pairagon TTTTCATGTGAATCCAACAAGCAGTGAAGACCTCAGGAAAATCCCG tgcatgaagcaatcaggatgggagtacatgtcccacccttcctcccttagCTTTCATGTGAATCCAACAAGTAGTGAAGATCTTAGAAAAATCCCAgtgagcttcaccaagaaatagttcatatgaagatgccactttttttccat Alignment from Exonerate_protein2genome TTTTCATGTGAATCCAACAAGCAGTGAAGACCTCAGGAAAATCCCG tgcatgaagcaatcaggatgggagtacatgtcccacccttcctcccttagCTTTCATGTGAATCCAACAAGTAGTGAAGATCTTAGAAAAATCCCAgtgagcttcaccaagaaatagttcatatgaagatgccactttttttccat Alignment from Exonerate_coding2genome TTTTCATGTGAATCCAACAAGCAGTGAAGACCTCAGGAAAATCCCG tgcatgaagcaatcaggatgggagtacatgtcccacccttcctcccttagCTTTCATGTGAATCCAACAAGTAGTGAAGATCTTAGAAAAATCCCAgtgagcttcaccaagaaatagttcatatgaagatgccactttttttccat Alignment from GeneWise TTTTCATGTGAATCCAACAAGCAGTGAAGACCTCAGGAAAATCCCG tgcatgaagcaatcaggatgggagtacatgtcccacccttcctcccttagCTTTCATGTGAATCCAACAAGTAGTGAAGATCTTAGAAAAATCCCAgtgagcttcaccaagaaatagttcatatgaagatgccactttttttccat #### Rab1b_ID845_3 --> 0 - 0 Original Alignment GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccagatgttggtttgtttcccactcagctttgacttctctctgaaacagGATGATACTCACACAGAGAGCTACATCAGCACCATTGGTGTTGATTTTAAGATACGGACAATTAAGCTGGATGGCAAAACCATCAAACTGCAGATTgtgagctctaatctgatcctgttttctcgtggctgtattttatttatgtt Alignment from CESAR GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccagatgttggtttgtttcccactcagctttgacttctctctgaaacagGATGATACTCACACAGAGAGCTACATCAGCACCATTGGTGTTGATTTTAAGATACGGACAATTAAGCTGGATGGCAAAACCATCAAACTGCAGATTgtgagctctaatctgatcctgttttctcgtggctgctccctctgcatttc Alignment from Spaln_aa2Genome GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccagatgttggtttgtttcccactcagctttgacttctctctgaaacagGATGATACTCACACAGAGAGCTACATCAGCACCATTGGTGTTGATTTTAAGATACGGACAATTAAGCTGGATGGCAAAACCATCAAACTGCAGATTgtgagctctaatctgatcctgttttctcgtggctgtattttatttatgtt Alignment from Spaln_nt2Genome GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccagatgttggtttgtttcccactcagctttgacttctctctgaaacagGATGATACTCACACAGAGAGCTACATCAGCACCATTGGTGTTGATTTTAAGATACGGACAATTAAGCTGGATGGCAAAACCATCAAACTGCAGATTgtgagctctaatctgatcctgttttctcgtggctgtattttatttatgtt Alignment from Pairagon GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccagatgttggtttgtttcccactcagctttgacttctctctgaaacagGATGATACTCACACAGAGAGCTACATCAGCACCATTGGTGTTGATTTTAAGATACGGACAATTAAGCTGGATGGCAAAACCATCAAACTGCAGATTgtgagctctaatctgatcctgttttctcgtggctgtattttatttatgtt Alignment from Exonerate_protein2genome GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccagatgttggtttgtttcccactcagctttgacttctctctgaaacagGATGATACTCACACAGAGAGCTACATCAGCACCATTGGTGTTGATTTTAAGATACGGACAATTAAGCTGGATGGCAAAACCATCAAACTGCAGATTgtgagctctaatctgatcctgttttctcgtggctgtattttatttatgtt Alignment from Exonerate_coding2genome GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccagatgttggtttgtttcccactcagctttgacttctctctgaaacagGATGATACTCACACAGAGAGCTACATCAGCACCATTGGTGTTGATTTTAAGATACGGACAATTAAGCTGGATGGCAAAACCATCAAACTGCAGATTgtgagctctaatctgatcctgttttctcgtggctgtattttatttatgtt Alignment from GeneWise GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT gccagatgttggtttgtttcccactcagctttgacttctctctgaaacagGATGATACTCACACAGAGAGCTACATCAGCACCATTGGTGTTGATTTTAAGATACGGACAATTAAGCTGGATGGCAAAACCATCAAACTGCAGATTgtgagctctaatctgatcctgttttctcgtggctgtattttatttatgtt #### Rasgrp2_ID1704_3 --> 1 - 2 Original Alignment cTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCag gcagtaagtataaagcatatgcctacctgacatacgttcttgtcttttagcTATCAACAATCCCAGAAGGATAACTCTAATTCCCTACAGATGAAAACATGTCACCTTGTCaggtgagcctggtccctaaggttaatcttggtgaaggcagatgcaaggccca Alignment from CESAR cTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCag gcagtaagtataaagcatatgcctacctgacatacgttcttgtcttttagcTATCAACAATCCCAGAAGGATAACTCTAATTCCCTACAGATGAAAACATGTCACCTTGTCaggtgagcctggtccctaaggttaatcttggtgaaggcagatgcaaggccca Alignment from Spaln_aa2Genome CTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCAG gcagtaagtataaagcatatgcctacctgacatacgttcttgtcttttagCTATCAACAATCCCAGAAGGATAACTCTAATTCCCTACAGATGAAAACATGTCACCTTGTCAGgtgagcctggtccctaaggttaatcttggtgaaggcagatgcaaggccca Alignment from Spaln_nt2Genome CTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCAG gcagtaagtataaagcatatgcctacctgacatacgttcttgtcttttagCTATCAACAATCCCAGAAGGATAACTCTAATTCCCTACAGATGAAAACATGTCACCTTGTCAGgtgagcctggtccctaaggttaatcttggtgaaggcagatgcaaggccca Alignment from Pairagon CTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCAG gcagtaagtataaagcatatgcctacctgacatacgttcttgtcttttagCTATCAACAATCCCAGAAGGATAACTCTAATTCCCTACAGATGAAAACATGTCACCTTGTCAGgtgagcctggtccctaaggttaatcttggtgaaggcagatgcaaggccca Alignment from Exonerate_protein2genome CTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCAG gcagtaagtataaagcatatgcctacctgacatacgttcttgtcttttagCTATCAACAATCCCAGAAGGATAACTCTAATTCCCTACAGATGAAAACATGTCACCTTGTCAGgtgagcctggtccctaaggttaatcttggtgaaggcagatgcaaggccca Alignment from Exonerate_coding2genome CTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCAG gcagtaagtataaagcatatgcctacctgacatacgttcttgtcttttagCTATCAACAATCCCAGAAGGATAACTCTAATTCCCTACAGATGAAAACATGTCACCTTGTCAGgtgagcctggtccctaaggttaatcttggtgaaggcagatgcaaggccca Alignment from GeneWise CTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCAG gcagtaagtataaagcatatgcctacctgacatacgttcttgtcttttagCTATCAACAATCCCAGAAGGATAACTCTAATTCCCTACAGATGAAAACATGTCACCTTGTCAGgtgagcctggtccctaaggttaatcttggtgaaggcagatgcaaggccca #### Rasgrp2_ID1705_4 --> 1 - 2 Original Alignment gTACTGGATCTCAGCCTTCCCAGCAGAGTTCGACTTGAACCCAGAGCTGGCTGAACAGATCAAGGAGCTGAAGGCTCTGTTAGACCAAGAAGGGAACCGCAGGCACAGCAGCCTCATCGACATCGAGAGTgt cagctgcatgttagttgatcacaatatgtctgcttcccactggcctgaagaTACTGGATCTCATCCTTCCCAGCAGAGTTTGATTTGAACCCGGAGCTGGCAGAACATATCAAAGACCTGAAGGCCCTTTTA---------GGGAACCATAGACACAGCAGCCTTATAGACATTGAGACTgtgtaagggggtggccacatcgcataatgcatgactacacatacacacaatg Alignment from CESAR gTACTGGATCTCAGCCTTCCCAGCAGAGTTCGACTTGAACCCAGAGCTGGCTGAACAGATCAAGGAGCTGAAGGCTCTGTTAGACCAAGAAGGGAACCGCAGGCACAGCAGCCTCATCGACATCGAGAGTgt cagctgcatgttagttgatcacaatatgtctgcttcccactggcctgaagaTACTGGATCTCATCCTTCCCAGCAGAGTTTGATTTGAACCCGGAGCTGGCAGAACATATCAAAGACCTGAAGGCCCTTTTA---------GGGAACCATAGACACAGCAGCCTTATAGACATTGAGACTgtgtaagggggtggccacatcgcataatgcatgactacacatacacacaatg Alignment from Spaln_aa2Genome GTACTGGATCTCAGCCTTCCCAGCAGAGTTCGACTTGAACCCAGAGCTGGCTGAACAGATCAAGGAGCTGAAGGCTCTGTTAGACCAAGAAGGGAACCGCAGGCACAGCAGCCTCATCGACATCGAGAGTGT cagctgcatgttagttgatcacaatatgtctgcttcccactggcctgaagATACTGGATCTCATCCTTCCCAGCAGAGTTTGATTTGAACCCGGAGCTGGCAGAACATATCAAAGACCTGAAGGCCCTTTTA---------GGGAACCATAGACACAGCAGCCTTATAGACATTGAGACTGTgtaagggggtggccacatcgcataatgcatgactacacatacacacaatg Alignment from Spaln_nt2Genome GTACTGGATCTCAGCCTTCCCAGCAGAGTTCGACTTGAACCCAGAGCTGGCTGAACAGATCAAGGAGCTGAAGGCTCTGTTAGACCAAGAAGGGAACCGCAGGCACAGCAGCCTCATCGACATCGAGAGTGT cagctgcatgttagttgatcacaatatgtctgcttcccactggcctgaagATACTGGATCTCATCCTTCCCAGCAGAGTTTGATTTGAACCCGGAGCTGGCAGAACATATCAAAGACCTGAAGGCCCTTTTAG---------GGAACCATAGACACAGCAGCCTTATAGACATTGAGACTGTgtaagggggtggccacatcgcataatgcatgactacacatacacacaatg Alignment from Pairagon GTACTGGATCTCAGCCTTCCCAGCAGAGTTCGACTTGAACCCAGAGCTGGCTGAACAGATCAAGGAGCTGAAGGCTCTGTTAGACCAAGAAGGGAACCGCAGGCACAGCAGCCTCATCGACATCGAGAGTGT cagctgcatgttagttgatcacaatatgtctgcttcccactggcctgaagATACTGGATCTCATCCTTCCCAGCAGAGTTTGATTTGAACCCGGAGCTGGCAGAACATATCAAAGACCTGAAGGCCCTTTT---------AGGGAACCATAGACACAGCAGCCTTATAGACATTGAGACTGTgtaagggggtggccacatcgcataatgcatgactacacatacacacaatg Alignment from Exonerate_protein2genome GTACTGGATCTCAGCCTTCCCAGCAGAGTTCGACTTGAACCCAGAGCTGGCTGAACAGATCAAGGAGCTGAAGGCTCTGTTAGACCAAGAAGGGAACCGCAGGCACAGCAGCCTCATCGACATCGAGAGTGT cagctgcatgttagttgatcacaatatgtctgcttcccactggcctgaagATACTGGATCTCATCCTTCCCAGCAGAGTTTGATTTGAACCCGGAGCTGGCAGAACATATCAAAGACCTGAAGGCCCTTTTA---------GGGAACCATAGACACAGCAGCCTTATAGACATTGAGACTGTgtaagggggtggccacatcgcataatgcatgactacacatacacacaatg Alignment from Exonerate_coding2genome GTACTGGATCTCAGCCTTCCCAGCAGAGTTCGACTTGAACCCAGAGCTGGCTGAACAGATCAAGGAGCTGAAGGCTCTGTTAGACCAAGAAGGGAACCGCAGGCACAGCAGCCTCATCGACATCGAGAGTGT cagctgcatgttagttgatcacaatatgtctgcttcccactggcctgaagATACTGGATCTCATCCTTCCCAGCAGAGTTTGATTTGAACCCGGAGCTGGCAGAACATATCAAAGACCTGAAGGCCCTTTTA---------GGGAACCATAGACACAGCAGCCTTATAGACATTGAGACTGTgtaagggggtggccacatcgcataatgcatgactacacatacacacaatg Alignment from GeneWise GTACTGGATCTCAGCCTTCCCAGCAGAGTTCGACTTGAACCCAGAGCTGGCTGAACAGATCAAGGAGCTGAAGGCTCTGTTAGACCAAGAAGGGAACCGCAGGCACAGCAGCCTCATCGACATCGAGAGTGT cagctgcatgttagttgatcacaatatgtctgcttcccactggcctgaagATACTGGATCTCATCCTTCCCAGCAGAGTTTGATTTGAACCCGGAGCTGGCAGAACATATCAAAGACCTGAAGGCCCTTTTA---------GGGAACCATAGACACAGCAGCCTTATAGACATTGAGACTGTgtaagggggtggccacatcgcataatgcatgactacacatacacacaatg #### Rasgrp2_ID1707_6 --> 0 - 0 Original Alignment TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agtgatattaactgttaacagtttcacacctgtgtcctctcttaccccagTTTCATGACTATCACAGTTTTGTCACACATGGATGCACTGTAGATAATCCAGTCCTGGAGCGATTTATCTCTCTCTTCAACAGTGTGCCTCAGTGGGTCCAGATAATGATCCTTAGCAAGCCAACAGCCACACAGCAGGCACTTGTCATTACTCACTTTGTACATGTAGCAGAGgtaggaacagttctgtcatatgagaccaggtcctttattgaatgtacaga Alignment from CESAR TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agtgatattaactgttaacagtttcacacctgtgtcctctcttaccccagTTTCATGACTATCACAGTTTTGTCACACATGGATGCACTGTAGATAATCCAGTCCTGGAGCGATTTATCTCTCTCTTCAACAGTGTGCCTCAGTGGGTCCAGATAATGATCCTTAGCAAGCCAACAGCCACACAGCAGGCACTTGTCATTACTCACTTTGTACATGTAGCAGAGgtaggaacagttctgtcatatgagaccaggtcctttattgaatgtacaga Alignment from Spaln_aa2Genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agtgatattaactgttaacagtttcacacctgtgtcctctcttaccccagTTTCATGACTATCACAGTTTTGTCACACATGGATGCACTGTAGATAATCCAGTCCTGGAGCGATTTATCTCTCTCTTCAACAGTGTGCCTCAGTGGGTCCAGATAATGATCCTTAGCAAGCCAACAGCCACACAGCAGGCACTTGTCATTACTCACTTTGTACATGTAGCAGAGgtaggaacagttctgtcatatgagaccaggtcctttattgaatgtacaga Alignment from Spaln_nt2Genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agtgatattaactgttaacagtttcacacctgtgtcctctcttaccccagTTTCATGACTATCACAGTTTTGTCACACATGGATGCACTGTAGATAATCCAGTCCTGGAGCGATTTATCTCTCTCTTCAACAGTGTGCCTCAGTGGGTCCAGATAATGATCCTTAGCAAGCCAACAGCCACACAGCAGGCACTTGTCATTACTCACTTTGTACATGTAGCAGAGgtaggaacagttctgtcatatgagaccaggtcctttattgaatgtacaga Alignment from Pairagon TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agtgatattaactgttaacagtttcacacctgtgtcctctcttaccccagTTTCATGACTATCACAGTTTTGTCACACATGGATGCACTGTAGATAATCCAGTCCTGGAGCGATTTATCTCTCTCTTCAACAGTGTGCCTCAGTGGGTCCAGATAATGATCCTTAGCAAGCCAACAGCCACACAGCAGGCACTTGTCATTACTCACTTTGTACATGTAGCAGAGgtaggaacagttctgtcatatgagaccaggtcctttattgaatgtacaga Alignment from Exonerate_protein2genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agtgatattaactgttaacagtttcacacctgtgtcctctcttaccccagTTTCATGACTATCACAGTTTTGTCACACATGGATGCACTGTAGATAATCCAGTCCTGGAGCGATTTATCTCTCTCTTCAACAGTGTGCCTCAGTGGGTCCAGATAATGATCCTTAGCAAGCCAACAGCCACACAGCAGGCACTTGTCATTACTCACTTTGTACATGTAGCAGAGgtaggaacagttctgtcatatgagaccaggtcctttattgaatgtacaga Alignment from Exonerate_coding2genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agtgatattaactgttaacagtttcacacctgtgtcctctcttaccccagTTTCATGACTATCACAGTTTTGTCACACATGGATGCACTGTAGATAATCCAGTCCTGGAGCGATTTATCTCTCTCTTCAACAGTGTGCCTCAGTGGGTCCAGATAATGATCCTTAGCAAGCCAACAGCCACACAGCAGGCACTTGTCATTACTCACTTTGTACATGTAGCAGAGgtaggaacagttctgtcatatgagaccaggtcctttattgaatgtacaga Alignment from GeneWise TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agtgatattaactgttaacagtttcacacctgtgtcctctcttaccccagTTTCATGACTATCACAGTTTTGTCACACATGGATGCACTGTAGATAATCCAGTCCTGGAGCGATTTATCTCTCTCTTCAACAGTGTGCCTCAGTGGGTCCAGATAATGATCCTTAGCAAGCCAACAGCCACACAGCAGGCACTTGTCATTACTCACTTTGTACATGTAGCAGAGgtaggaacagttctgtcatatgagaccaggtcctttattgaatgtacaga #### Rasgrp2_ID1715_14 --> 2 - 1 Original Alignment ctTGTGGTGTGAACTGCCACAAGCAATGCAAAGAGCGCCTGTCAGTGGAATGTCGCCGCAGGGCCCAGAGTGTCAGCCTGGAGGGCTCTGCACCCTCTCCCTCACCCACACATACCCACCATCGGGCCTTCAGCTTTTCCCTGCCTCGCCCAGGCAGGCGCAGCTCTCGGCCTCCAg agtgttttgtaggtgagacgcttgttatagcttcctgttttcttttgcagcgTGTGGGGTGAACTGTTATAAGCAGTGTAAGGAGCATTTGTCAGTGGAATGTCGACGGAGAACTCAGAGTGTCAGCCTAGAGGGTTCAGCACCTTCACCCTCACCCACGCACACTCACCATCGGGCATTCAGCTTCTCCTTGCCCCGGCCTGGTCGGCGTAGTCCTCGACCTCCAggtaagtaagctactaggaaggtcactatgtgttttctatcacaatacctt Alignment from CESAR ctTGTGGTGTGAACTGCCACAAGCAATGCAAAGAGCGCCTGTCAGTGGAATGTCGCCGCAGGGCCCAGAGTGTCAGCCTGGAGGGCTCTGCACCCTCTCCCTCACCCACACATACCCACCATCGGGCCTTCAGCTTTTCCCTGCCTCGCCCAGGCAGGCGCAGCTCTCGGCCTCCAg agtgttttgtaggtgagacgcttgttatagcttcctgttttcttttgcagcgTGTGGGGTGAACTGTTATAAGCAGTGTAAGGAGCATTTGTCAGTGGAATGTCGACGGAGAACTCAGAGTGTCAGCCTAGAGGGTTCAGCACCTTCACCCTCACCCACGCACACTCACCATCGGGCATTCAGCTTCTCCTTGCCCCGGCCTGGTCGGCGTAGTCCTCGACCTCCAggtaagtaagctactaggaaggtcactatgtgttttctatcacaatacctt Alignment from Spaln_aa2Genome CTTGTGGTGTGAACTGCCACAAGCAATGCAAAGAGCGCCTGTCAGTGGAATGTCGCCGCAGGGCCCAGAGTGTCAGCCTGGAGGGCTCTGCACCCTCTCCCTCACCCACACATACCCACCATCGGGCCTTCAGCTTTTCCCTGCCTCGCCCAGGCAGGCGCAGCTCTCGGCCTCCAG agtgttttgtaggtgagacgcttgttatagcttcctgttttcttttgcagCGTGTGGGGTGAACTGTTATAAGCAGTGTAAGGAGCATTTGTCAGTGGAATGTCGACGGAGAACTCAGAGTGTCAGCCTAGAGGGTTCAGCACCTTCACCCTCACCCACGCACACTCACCATCGGGCATTCAGCTTCTCCTTGCCCCGGCCTGGTCGGCGTAGTCCTCGACCTCCAGgtaagtaagctactaggaaggtcactatgtgttttctatcacaatacctt Alignment from Spaln_nt2Genome CTTGTGGTGTGAACTGCCACAAGCAATGCAAAGAGCGCCTGTCAGTGGAATGTCGCCGCAGGGCCCAGAGTGTCAGCCTGGAGGGCTCTGCACCCTCTCCCTCACCCACACATACCCACCATCGGGCCTTCAGCTTTTCCCTGCCTCGCCCAGGCAGGCGCAGCTCTCGGCCTCCAG agtgttttgtaggtgagacgcttgttatagcttcctgttttcttttgcagCGTGTGGGGTGAACTGTTATAAGCAGTGTAAGGAGCATTTGTCAGTGGAATGTCGACGGAGAACTCAGAGTGTCAGCCTAGAGGGTTCAGCACCTTCACCCTCACCCACGCACACTCACCATCGGGCATTCAGCTTCTCCTTGCCCCGGCCTGGTCGGCGTAGTCCTCGACCTCCAGgtaagtaagctactaggaaggtcactatgtgttttctatcacaatacctt Alignment from Pairagon CTTGTGGTGTGAACTGCCACAAGCAATGCAAAGAGCGCCTGTCAGTGGAATGTCGCCGCAGGGCCCAGAGTGTCAGCCTGGAGGGCTCTGCACCCTCTCCCTCACCCACACATACCCACCATCGGGCCTTCAGCTTTTCCCTGCCTCGCCCAGGCAGGCGCAGCTCTCGGCCTCCAG agtgttttgtaggtgagacgcttgttatagcttcctgttttcttttgcagCGTGTGGGGTGAACTGTTATAAGCAGTGTAAGGAGCATTTGTCAGTGGAATGTCGACGGAGAACTCAGAGTGTCAGCCTAGAGGGTTCAGCACCTTCACCCTCACCCACGCACACTCACCATCGGGCATTCAGCTTCTCCTTGCCCCGGCCTGGTCGGCGTAGTCCTCGACCTCCAGgtaagtaagctactaggaaggtcactatgtgttttctatcacaatacctt Alignment from Exonerate_protein2genome CTTGTGGTGTGAACTGCCACAAGCAATGCAAAGAGCGCCTGTCAGTGGAATGTCGCCGCAGGGCCCAGAGTGTCAGCCTGGAGGGCTCTGCACCCTCTCCCTCACCCACACATACCCACCATCGGGCCTTCAGCTTTTCCCTGCCTCGCCCAGGCAGGCGCAGCTCTCGGCCTCCAG agtgttttgtaggtgagacgcttgttatagcttcctgttttcttttgcagCGTGTGGGGTGAACTGTTATAAGCAGTGTAAGGAGCATTTGTCAGTGGAATGTCGACGGAGAACTCAGAGTGTCAGCCTAGAGGGTTCAGCACCTTCACCCTCACCCACGCACACTCACCATCGGGCATTCAGCTTCTCCTTGCCCCGGCCTGGTCGGCGTAGTCCTCGACCTCCAGgtaagtaagctactaggaaggtcactatgtgttttctatcacaatacctt Alignment from Exonerate_coding2genome agtgttttgtaggtgagacgcttgttatagcttcctgttttcttttgcagcgtgtggggtgaactgttataagcagtgtaaggagcatttgtcagtggaatgtcgacggagaactcagagtgtcagcctagagggttcagcaccttcaccctcacccacgcacactcaccatcgggcattcagcttctccttgccccggcctggtcggcgtagtcctcgacctccaggtaagtaagctactaggaaggtcactatgtgttttctatcacaatacctt Alignment from GeneWise CTTGTGGTGTGAACTGCCACAAGCAATGCAAAGAGCGCCTGTCAGTGGAATGTCGCCGCAGGGCCCAGAGTGTCAGCCTGGAGGGCTCTGCACCCTCTCCCTCACCCACACATACCCACCATCGGGCCTTCAGCTTTTCCCTGCCTCGCCCAGGCAGGCGCAGCTCTCGGCCTCCAG agtgttttgtaggtgagacgcttgttatagcttcctgttttcttttgcagCGTGTGGGGTGAACTGTTATAAGCAGTGTAAGGAGCATTTGTCAGTGGAATGTCGACGGAGAACTCAGAGTGTCAGCCTAGAGGGTTCAGCACCTTCACCCTCACCCACGCACACTCACCATCGGGCATTCAGCTTCTCCTTGCCCCGGCCTGGTCGGCGTAGTCCTCGACCTCCAGgtaagtaagctactaggaaggtcactatgtgttttctatcacaatacctt #### Rbm20_ID11376_3 --> 0 - 2 Original Alignment GACTGGGAGCTACATGTGAAAGGGAAGCTGCATGCCCAGAAATGCCTGCTCTTCTCAGAAag gctgttgctactattctagtttactcctatttgtgtttatctatcttcagGACTGGGAACTACATTTGAAAGGGAAACTCCATGCCCAGAAATGCTTGCTGTTTTCGGAAaggtaagtgctttgttggtggtgtcatccttatagggtagatgtactaggac Alignment from CESAR GACTGGGAGCTACATGTGAAAGGGAAGCTGCATGCCCAGAAATGCCTGCTCTTCTCAGAAag gctgttgctactattctagtttactcctatttgtgtttatctatcttcagGACTGGGAACTACATTTGAAAGGGAAACTCCATGCCCAGAAATGCTTGCTGTTTTCGGAAaggtaagtgctttgttggtggtgtcatccttatagggtagatgtactaggac Alignment from Spaln_aa2Genome GACTGGGAGCTACATGTGAAAGGGAAGCTGCATGCCCAGAAATGCCTGCTCTTCTCAGAAAG gctgttgctactattctagtttactcctatttgtgtttatctatcttcagGACTGGGAACTACATTTGAAAGGGAAACTCCATGCCCAGAAATGCTTGCTGTTTTCGGAAAGgtaagtgctttgttggtggtgtcatccttatagggtagatgtactaggac Alignment from Spaln_nt2Genome GACTGGGAGCTACATGTGAAAGGGAAGCTGCATGCCCAGAAATGCCTGCTCTTCTCAGAAAG gctgttgctactattctagtttactcctatttgtgtttatctatcttcagGACTGGGAACTACATTTGAAAGGGAAACTCCATGCCCAGAAATGCTTGCTGTTTTCGGAAAGgtaagtgctttgttggtggtgtcatccttatagggtagatgtactaggac Alignment from Pairagon GACTGGGAGCTACATGTGAAAGGGAAGCTGCATGCCCAGAAATGCCTGCTCTTCTCAGAAAG gctgttgctactattctagtttactcctatttgtgtttatctatcttcagGACTGGGAACTACATTTGAAAGGGAAACTCCATGCCCAGAAATGCTTGCTGTTTTCGGAAAGgtaagtgctttgttggtggtgtcatccttatagggtagatgtactaggac Alignment from Exonerate_protein2genome GACTGGGAGCTACATGTGAAAGGGAAGCTGCATGCCCAGAAATGCCTGCTCTTCTCAGAAAG gctgttgctactattctagtttactcctatttgtgtttatctatcttcagGACTGGGAACTACATTTGAAAGGGAAACTCCATGCCCAGAAATGCTTGCTGTTTTCGGAAAGgtaagtgctttgttggtggtgtcatccttatagggtagatgtactaggac Alignment from Exonerate_coding2genome GACTGGGAGCTACATGTGAAAGGGAAGCTGCATGCCCAGAAATGCCTGCTCTTCTCAGAAAG gctgttgctactattctagtttactcctatttgtgtttatctatcttcagGACTGGGAACTACATTTGAAAGGGAAACTCCATGCCCAGAAATGCTTGCTGTTTTCGGAAAGgtaagtgctttgttggtggtgtcatccttatagggtagatgtactaggac Alignment from GeneWise GACTGGGAGCTACATGTGAAAGGGAAGCTGCATGCCCAGAAATGCCTGCTCTTCTCAGAAAG gctgttgctactattctagtttactcctatttgtgtttatctatcttcagGACTGGGAACTACATTTGAAAGGGAAACTCCATGCCCAGAAATGCTTGCTGTTTTCGGAAAGgtaagtgctttgttggtggtgtcatccttatagggtagatgtactaggac #### Rbm20_ID11388_13 --> 2 - 0 Original Alignment gaGTGGAGTTCGTGGTTCCCAGGACTGGCTTTTATTGCAAGCTGTGTGGCCTGTTCTACACAAGCGAGGAGGCGGCCAAAGTGAGCCACTGCCGCAGCACTGTCCACTACAGGAACTTACAG tgggccctgactttacattcattttatgccatcctgtctcctcttcacaggtGTCGAATTTGTAGTCCCCAGGACTGGTTTCTATTGTAAACTGTGTGGCTTATTCTACACAAGTGAGGAGGTAGCAAAAGTGAGCCACAGTCACAGCACTATTCATTACAGGAACTTACTGgtgagatgtgctatctgccacgatcaatgtctagctgtatttgtatattt Alignment from CESAR gaGTGGAGTTCGTGGTTCCCAGGACTGGCTTTTATTGCAAGCTGTGTGGCCTGTTCTACACAAGCGAGGAGGCGGCCAAAGTGAGCCACTGCCGCAGCACTGTCCACTACAGGAACTTACAG tgggccctgactttacattcattttatgccatcctgtctcctcttcacaggtGTCGAATTTGTAGTCCCCAGGACTGGTTTCTATTGTAAACTGTGTGGCTTATTCTACACAAGTGAGGAGGTAGCAAAAGTGAGCCACAGTCACAGCACTATTCATTACAGGAACTTACTGgtgagatgtgctatctgccacgatcaatgtctagctgtatttgtatattt Alignment from Spaln_aa2Genome GAGTGGAGTTCGTGGTTCCCAGGACTGGCTTTTATTGCAAGCTGTGTGGCCTGTTCTACACAAGCGAGGAGGCGGCCAAAGTGAGCCACTGCCGCAGCACTGTCCACTACAGGAACTTACAG tgggccctgactttacattcattttatgccatcctgtctcctcttcacagGTGTCGAATTTGTAGTCCCCAGGACTGGTTTCTATTGTAAACTGTGTGGCTTATTCTACACAAGTGAGGAGGTAGCAAAAGTGAGCCACAGTCACAGCACTATTCATTACAGGAACTTACTGgtgagatgtgctatctgccacgatcaatgtctagctgtatttgtatattt Alignment from Spaln_nt2Genome GAGTGGAGTTCGTGGTTCCCAGGACTGGCTTTTATTGCAAGCTGTGTGGCCTGTTCTACACAAGCGAGGAGGCGGCCAAAGTGAGCCACTGCCGCAGCACTGTCCACTACAGGAACTTACAG tgggccctgactttacattcattttatgccatcctgtctcctcttcacagGTGTCGAATTTGTAGTCCCCAGGACTGGTTTCTATTGTAAACTGTGTGGCTTATTCTACACAAGTGAGGAGGTAGCAAAAGTGAGCCACAGTCACAGCACTATTCATTACAGGAACTTACTGgtgagatgtgctatctgccacgatcaatgtctagctgtatttgtatattt Alignment from Pairagon GAGTGGAGTTCGTGGTTCCCAGGACTGGCTTTTATTGCAAGCTGTGTGGCCTGTTCTACACAAGCGAGGAGGCGGCCAAAGTGAGCCACTGCCGCAGCACTGTCCACTACAGGAACTTACAG tgggccctgactttacattcattttatgccatcctgtctcctcttcacagGTGTCGAATTTGTAGTCCCCAGGACTGGTTTCTATTGTAAACTGTGTGGCTTATTCTACACAAGTGAGGAGGTAGCAAAAGTGAGCCACAGTCACAGCACTATTCATTACAGGAACTTACTGgtgagatgtgctatctgccacgatcaatgtctagctgtatttgtatattt Alignment from Exonerate_protein2genome GAGTGGAGTTCGTGGTTCCCAGGACTGGCTTTTATTGCAAGCTGTGTGGCCTGTTCTACACAAGCGAGGAGGCGGCCAAAGTGAGCCACTGCCGCAGCACTGTCCACTACAGGAACTTACAG tgggccctgactttacattcattttatgccatcctgtctcctcttcacagGTGTCGAATTTGTAGTCCCCAGGACTGGTTTCTATTGTAAACTGTGTGGCTTATTCTACACAAGTGAGGAGGTAGCAAAAGTGAGCCACAGTCACAGCACTATTCATTACAGGAACTTACTGgtgagatgtgctatctgccacgatcaatgtctagctgtatttgtatattt Alignment from Exonerate_coding2genome GAGTGGAGTTCGTGGTTCCCAGGACTGGCTTTTATTGCAAGCTGTGTGGCCTGTTCTACACAAGCGAGGAGGCGGCCAAAGTGAGCCACTGCCGCAGCACTGTCCACTACAGGAACTTACAG tgggccctgactttacattcattttatgccatcctgtctcctcttcacagGTGTCGAATTTGTAGTCCCCAGGACTGGTTTCTATTGTAAACTGTGTGGCTTATTCTACACAAGTGAGGAGGTAGCAAAAGTGAGCCACAGTCACAGCACTATTCATTACAGGAACTTACTGgtgagatgtgctatctgccacgatcaatgtctagctgtatttgtatattt Alignment from GeneWise GAGTGGAGTTCGTGGTTCCCAGGACTGGCTTTTATTGCAAGCTGTGTGGCCTGTTCTACACAAGCGAGGAGGCGGCCAAAGTGAGCCACTGCCGCAGCACTGTCCACTACAGGAACTTACAG tgggccctgactttacattcattttatgccatcctgtctcctcttcacagGTGTCGAATTTGTAGTCCCCAGGACTGGTTTCTATTGTAAACTGTGTGGCTTATTCTACACAAGTGAGGAGGTAGCAAAAGTGAGCCACAGTCACAGCACTATTCATTACAGGAACTTACTGgtgagatgtgctatctgccacgatcaatgtctagctgtatttgtatattt #### Rbp4_ID7524_3 --> 0 - 2 Original Alignment TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCT---GAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGag ctaatttagttggggggtgagcttaggctttttacttttctctccctcagTTTTCAGGTCTCTTGTATACTATTGCA---AAGGGTCCGAAGGGGCTCTTTTTGCAAGACAATATCATTGCTGCTGAGTTTTCTGTAGATGAGAAGGGGCATATGAGTGCTACTGCCAAGGGACAGGTACATCTCCTGaggtgagtgaacctgagtgcagtactgtcactttagcctaataaagcctttc Alignment from CESAR TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATC---GCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGag ctaatttagttggggggtgagcttaggctttttacttttctctccctcagTTTTCAGGTCTCTTGTATACTATTGCA---AAGGGTCCGAAGGGGCTCTTTTTGCAAGACAATATCATTGCTGCTGAGTTTTCTGTAGATGAGAAGGGGCATATGAGTGCTACTGCCAAGGGACAGGTACATCTCCTGaggtgagtgaacctgagtgcagtactgtcactttagcctaataaagcctttc Alignment from Spaln_aa2Genome TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG ctaatttagttggggggtgagcttaggctttttacttttctctccctcagTTTTCAGGTCTCTTGTATACTATTGCAAAGGGTCCGAAGGGGCTCTTTTTGCAAGACAATATCATTGCTGCTGAGTTTTCTGTAGATGAGAAGGGGCATATGAGTGCTACTGCCAAGGGACAGGTACATCTCCTGAGgtgagtgaacctgagtgcagtactgtcactttagcctaataaagcctttc Alignment from Spaln_nt2Genome TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTG---AGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG ctaatttagttggggggtgagcttaggctttttacttttctctccctcagTTTTCAGGTCTCTTGTATACTATTGC---AAAGGGTCCGAAGGGGCTCTTTTTGCAAGACAATATCATTGCTGCTGAGTTTTCTGTAGATGAGAAGGGGCATATGAGTGCTACTGCCAAGGGACAGGTACATCTCCTGAGgtgagtgaacctgagtgcagtactgtcactttagcctaataaagcctttc Alignment from Pairagon TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCAT---CGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG ctaatttagttggggggtgagcttaggctttttacttttctctccctcagTTTTCAGGTCTCTTGTATACTATTGC---AAAGGGTCCGAAGGGGCTCTTTTTGCAAGACAATATCATTGCTGCTGAGTTTTCTGTAGATGAGAAGGGGCATATGAGTGCTACTGCCAAGGGACAGGTACATCTCCTGAGgtgagtgaacctgagtgcagtactgtcactttagcctaataaagcctttc Alignment from Exonerate_protein2genome TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATC---GCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG ctaatttagttggggggtgagcttaggctttttacttttctctccctcagTTTTCAGGTCTCTTGTATACTATTGCA---AAGGGTCCGAAGGGGCTCTTTTTGCAAGACAATATCATTGCTGCTGAGTTTTCTGTAGATGAGAAGGGGCATATGAGTGCTACTGCCAAGGGACAGGTACATCTCCTGAGgtgagtgaacctgagtgcagtactgtcactttagcctaataaagcctttc Alignment from Exonerate_coding2genome TTCGACAAGGCTCGTTTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATC---GCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG ctaatttagttggggggtgagcttaggctttttacTTTTCTCTCCCTCAGTTTTCAGGTCTCTTGTATACTATTGCA---AAGGGTCCGAAGGGGCTCTTTTTGCAAGACAATATCATTGCTGCTGAGTTTTCTGTAGATGAGAAGGGGCATATGAGTGCTACTGCCAAGGGACAGGTACATCTCCTGAGgtgagtgaacctgagtgcagtactgtcactttagcctaataaagcctttc Alignment from GeneWise TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCT---GAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG ctaatttagttggggggtgagcttaggctttttacttttctctccctcagTTTTCAGGTCTCTTGTATACTATTGCAAAG---GGTCCGAAGGGGCTCTTTTTGCAAGACAATATCATTGCTGCTGAGTTTTCTGTAGATGAGAAGGGGCATATGAGTGCTACTGCCAAGGGACAGGTACATCTCCTGAGgtgagtgaacctgagtgcagtactgtcactttagcctaataaagcctttc #### Rce1_ID579_3 --> 0 - 0 Original Alignment CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG cataccgaggaatcttttatctgcaacatcttaaacttttaatatttcagCCTGGAACATCACTCCTCATCTTGATGGGTTTCAGGCTAGAGGGCATTTTCCCTGCAGCATTGCTGCCACTGCTATTAACTATGgtaagtcatgcttggtatttttacaacattattatagtcacttaatggcc Alignment from CESAR CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG cataccgaggaatcttttatctgcaacatcttaaacttttaatatttcagCCTGGAACATCACTCCTCATCTTGATGGGTTTCAGGCTAGAGGGCATTTTCCCTGCAGCATTGCTGCCACTGCTATTAACTATGgtaagtcatgcttggtatttttacaacattattatagtcacttaatggcc Alignment from Spaln_aa2Genome CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG cataccgaggaatcttttatctgcaacatcttaaacttttaatatttcagCCTGGAACATCACTCCTCATCTTGATGGGTTTCAGGCTAGAGGGCATTTTCCCTGCAGCATTGCTGCCACTGCTATTAACTATGgtaagtcatgcttggtatttttacaacattattatagtcacttaatggcc Alignment from Spaln_nt2Genome CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG cataccgaggaatcttttatctgcaacatcttaaacttttaatatttcagCCTGGAACATCACTCCTCATCTTGATGGGTTTCAGGCTAGAGGGCATTTTCCCTGCAGCATTGCTGCCACTGCTATTAACTATGgtaagtcatgcttggtatttttacaacattattatagtcacttaatggcc Alignment from Pairagon CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG cataccgaggaatcttttatctgcaacatcttaaacttttaatatttcagCCTGGAACATCACTCCTCATCTTGATGGGTTTCAGGCTAGAGGGCATTTTCCCTGCAGCATTGCTGCCACTGCTATTAACTATGgtaagtcatgcttggtatttttacaacattattatagtcacttaatggcc Alignment from Exonerate_protein2genome CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG cataccgaggaatcttttatctgcaacatcttaaacttttaatatttcagCCTGGAACATCACTCCTCATCTTGATGGGTTTCAGGCTAGAGGGCATTTTCCCTGCAGCATTGCTGCCACTGCTATTAACTATGgtaagtcatgcttggtatttttacaacattattatagtcacttaatggcc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG cataccgaggaatcttttatctgcaacatcttaaacttttaatatttcagCCTGGAACATCACTCCTCATCTTGATGGGTTTCAGGCTAGAGGGCATTTTCCCTGCAGCATTGCTGCCACTGCTATTAACTATGgtaagtcatgcttggtatttttacaacattattatagtcacttaatggcc #### Rcl1_ID6211_2 --> 2 - 1 Original Alignment atTTTGAAGCAAGCTTTATAAGGCTATTGGATAAAATAACCAATGGTTCTCGAATTGAAATCAACCAAACAg acgaatatctaaaagactgagaaagatttaatcacttccttcatcttcagatTTTGAGGCAGGCTTTCTAAAGCTGTTGGACAAAATTACTAATGGCTCTCAAGTTGCAATCAATCAAACAggtaaaccatgaatctcagttccataatagcaagcagccagtagtgtccta Alignment from CESAR atTTTGAAGCAAGCTTTATAAGGCTATTGGATAAAATAACCAATGGTTCTCGAATTGAAATCAACCAAACAg acgaatatctaaaagactgagaaagatttaatcacttccttcatcttcagatTTTGAGGCAGGCTTTCTAAAGCTGTTGGACAAAATTACTAATGGCTCTCAAGTTGCAATCAATCAAACAggtaaaccatgaatctcagttccataatagcaagcagccagtagtgtccta Alignment from Spaln_aa2Genome ATTTTGAAGCAAGCTTTATAAGGCTATTGGATAAAATAACCAATGGTTCTCGAATTGAAATCAACCAAACAG acgaatatctaaaagactgagaaagatttaatcacttccttcatcttcagATTTTGAGGCAGGCTTTCTAAAGCTGTTGGACAAAATTACTAATGGCTCTCAAGTTGCAATCAATCAAACAGgtaaaccatgaatctcagttccataatagcaagcagccagtagtgtccta Alignment from Spaln_nt2Genome ATTTTGAAGCAAGCTTTATAAGGCTATTGGATAAAATAACCAATGGTTCTCGAATTGAAATCAACCAAACAG acgaatatctaaaagactgagaaagatttaatcacttccttcatcttcagATTTTGAGGCAGGCTTTCTAAAGCTGTTGGACAAAATTACTAATGGCTCTCAAGTTGCAATCAATCAAACAGgtaaaccatgaatctcagttccataatagcaagcagccagtagtgtccta Alignment from Pairagon ATTTTGAAGCAAGCTTTATAAGGCTATTGGATAAAATAACCAATGGTTCTCGAATTGAAATCAACCAAACAG acgaatatctaaaagactgagaaagatttaatcacttccttcatcttcagATTTTGAGGCAGGCTTTCTAAAGCTGTTGGACAAAATTACTAATGGCTCTCAAGTTGCAATCAATCAAACAGgtaaaccatgaatctcagttccataatagcaagcagccagtagtgtccta Alignment from Exonerate_protein2genome ATTTTGAAGCAAGCTTTATAAGGCTATTGGATAAAATAACCAATGGTTCTCGAATTGAAATCAACCAAACAG acgaatatctaaaagactgagaaagatttaatcacttccttcatcttcagATTTTGAGGCAGGCTTTCTAAAGCTGTTGGACAAAATTACTAATGGCTCTCAAGTTGCAATCAATCAAACAGgtaaaccatgaatctcagttccataatagcaagcagccagtagtgtccta Alignment from Exonerate_coding2genome ATTTTGAAGCAAGCTTTATAAGGCTATTGGATAAAATAACCAATGGTTCTCGAATTGAAATCAACCAAACAG acgaatatctaaaagactgagaaagatttaatcacttccttcatcttcagATTTTGAGGCAGGCTTTCTAAAGCTGTTGGACAAAATTACTAATGGCTCTCAAGTTGCAATCAATCAAACAGgtaaaccatgaatctcagttccataatagcaagcagccagtagtgtccta Alignment from GeneWise ATTTTGAAGCAAGCTTTATAAGGCTATTGGATAAAATAACCAATGGTTCTCGAATTGAAATCAACCAAACAG acgaatatctaaaagactgagaaagatttaatcacttccttcatcttcagATTTTGAGGCAGGCTTTCTAAAGCTGTTGGACAAAATTACTAATGGCTCTCAAGTTGCAATCAATCAAACAGgtaaaccatgaatctcagttccataatagcaagcagccagtagtgtccta #### Rcl1_ID6215_5 --> 0 - 2 Original Alignment ATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGCGAAGTGCTTTTCTCCTGCCCCGTGAGGAAGGTCCTGAAGCCTGTCCAGCTCACAGACCCAGGAAAAATCAAGCGGATCAGAGGAATGgc ctggctgcttgatccagtctctgctgcaaacagtgcaccgcccccggcagATCTTACATTGGGGAATGCCCCCTGGGGGGGGGGGTGAGGTACTTTTCTCCTGTCCTGTTAGGAAGGTCTTGGAGCCTGTTCAGCTCACAGACCCGGAGAAAATCAAGCGGATCAGAGGCACGgcgtaaagcccagataaaggtcctcgcccttccatttttactgctcatctta Alignment from CESAR ATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGCGAAGTGCTTTTCTCCTGCCCCGTGAGGAAGGTCCTGAAGCCTGTCCAGCTCACAGACCCAGGAAAAATCAAGCGGATCAGAGGAATGgc ctggctgcttgatccagtctctgctgcaaacagtgcaccgcccccggcagATCTTACATTGGGGAATGCCCCCTGGGGGGGGGGGTGAGGTACTTTTCTCCTGTCCTGTTAGGAAGGTCTTGGAGCCTGTTCAGCTCACAGACCCGGAGAAAATCAAGCGGATCAGAGGCACGgcgtaaagcccagataaaggtcctcgcccttccatttttactgctcatctta Alignment from Spaln_aa2Genome ATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGCGAAGTGCTTTTCTCCTGCCCCGTGAGGAAGGTCCTGAAGCCTGTCCAGCTCACAGACCCAGGAAAAATCAAGCGGATCAGAGGAATGGC ctggctgcttgatccagtctctgctgcaaacagtgcaccgcccccggcagATCTTACATTGGGGAATGCCCCCTGGGGGGGGGGGTGAGGTACTTTTCTCCTGTCCTGTTAGGAAGGTCTTGGAGCCTGTTCAGCTCACAGACCCGGAGAAAATCAAGCGGATCAGAGGCACGGCgtaaagcccagataaaggtcctcgcccttccatttttactgctcatctta Alignment from Spaln_nt2Genome ATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGCGAAGTGCTTTTCTCCTGCCCCGTGAGGAAGGTCCTGAAGCCTGTCCAGCTCACAGACCCAGGAAAAATCAAGCGGATCAGAGGAATGGC ctggctgcttgatccagtctctgctgcaaacagtgcaccgcccccggcagATCTTACATTGGGGAATGCCCCCTGGGGGGGGGGGTGAGGTACTTTTCTCCTGTCCTGTTAGGAAGGTCTTGGAGCCTGTTCAGCTCACAGACCCGGAGAAAATCAAGCGGATCAGAGGCACGGCgtaaagcccagataaaggtcctcgcccttccatttttactgctcatctta Alignment from Pairagon ATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGCGAAGTGCTTTTCTCCTGCCCCGTGAGGAAGGTCCTGAAGCCTGTCCAGCTCACAGACCCAGGAAAAATCAAGCGGATCAGAGGAATGGC ctggctgcttgatccagtctctgctgcaaacagtgcaccgcccccggcagATCTTACATTGGGGAATGCCCCCTGGGGGGGGGGGTGAGGTACTTTTCTCCTGTCCTGTTAGGAAGGTCTTGGAGCCTGTTCAGCTCACAGACCCGGAGAAAATCAAGCGGATCAGAGGCACGGCgtaaagcccagataaaggtcctcgcccttccatttttactgctcatctta Alignment from Exonerate_protein2genome ATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGCGAAGTGCTTTTCTCCTGCCCCGTGAGGAAGGTCCTGAAGCCTGTCCAGCTCACAGACCCAGGAAAAATCAAGCGGATCAGAGGAATGGC ctggctgcttgatccagtctctgctgcaaacagtgcaccgcccccggcagATCTTACATTGGGGAATGCCCCCTGGGGGGGGGGGTGAGGTACTTTTCTCCTGTCCTGTTAGGAAGGTCTTGGAGCCTGTTCAGCTCACAGACCCGGAGAAAATCAAGCGGATCAGAGGCACGGCgtaaagcccagataaaggtcctcgcccttccatttttactgctcatctta Alignment from Exonerate_coding2genome TCCCTCTACTGAAACAGTTTGGGATCGATGGAGAATCATTTGAGCTAAAGATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGCGAAGTGCTTTTCTCCTGCCCCGTGAGGAAGGTCCTGAAGCCTGTCCAGCTCACAGACCCAGGAAAAATCAAGCGGATCAGAGGAATGGC CTGGCTGCTTGATCCAGTCTCTGCTGCAAACAGTGCACCGCCCCCGGCAGATCTTACATTGGGGAATGCCCCCTGGGGGGGGGGGTGAGGTACTTTTCTCCTGTCCTGTTAGGAAGGTCTTGGAGCCTGTTCAGCTCACAGACCCGGAGAAAATCAAGCGGATCAGAGGCACGGCgtaaagcccagataaaggtcctcgcccttccatttttactgctcatctta Alignment from GeneWise ATCTTGCGTCGGGGAATGCCCCCTGGAGGAGGGGGCGAAGTGCTTTTCTCCTGCCCCGTGAGGAAGGTCCTGAAGCCTGTCCAGCTCACAGACCCAGGAAAAATCAAGCGGATCAGAGGAATGGC ctggctgcttgatccagtctctgctgcaaacagtgcaccgcccccggcagATCTTACATTGGGGAATGCCCCCTGGGGGGGGGGGTGAGGTACTTTTCTCCTGTCCTGTTAGGAAGGTCTTGGAGCCTGTTCAGCTCACAGACCCGGAGAAAATCAAGCGGATCAGAGGCACGGCgtaaagcccagataaaggtcctcgcccttccatttttactgctcatctta #### Rela_ID1126_3 --> 2 - 0 Original Alignment agCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG ctggaggcaagggcacaccatactgcctttttggcctattttttgcttagaaCCAGCCCAGGCAGCTGGTCCTTATGTAGACATCATCAAACAACCAAACCAACAAGGC---CATTTCCACTATAAATCTGATGGGCACTCCGAAGGTGGTATCCCTGGTGAGAGGAGCATGGATACTAAAAAAACACATCCCACTATAAAGgtacctaataaagtccttgtatggcaaacaaggaaagaagtcttggtatc Alignment from CESAR agCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG ctggaggcaagggcacaccatactgcctttttggcctattttttgcttagaaCCAGCCCAGGCAGCTGGTCCTTATGTAGACATCATCAAACAACCAAACCAACAAGGC---CATTTCCACTATAAATCTGATGGGCACTCCGAAGGTGGTATCCCTGGTGAGAGGAGCATGGATACTAAAAAAACACATCCCACTATAAAGgtacctaataaagtccttgtatggcaaacaaggaaagaagtcttggtatc Alignment from Spaln_aa2Genome AGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG ctggaggcaagggcacaccatactgcctttttggcctattttttgcttagAACCAGCCCAGGCAGCTGGTCCTTATGTAGACATCATCAAACAACCAAACCAACAAGGC---CATTTCCACTATAAATCTGATGGGCACTCCGAAGGTGGTATCCCTGGTGAGAGGAGCATGGATACTAAAAAAACACATCCCACTATAAAGgtacctaataaagtccttgtatggcaaacaaggaaagaagtcttggtatc Alignment from Spaln_nt2Genome AGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG ctggaggcaagggcacaccatactgcctttttggcctattttttgcttagAACCAGCCCAGGCAGCTGGTCCTTATGTAGACATCATCAAACAACCAAACCAACAAGGC---CATTTCCACTATAAATCTGATGGGCACTCCGAAGGTGGTATCCCTGGTGAGAGGAGCATGGATACTAAAAAAACACATCCCACTATAAAGgtacctaataaagtccttgtatggcaaacaaggaaagaagtcttggtatc Alignment from Pairagon AGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG ctggaggcaagggcacaccatactgcctttttggcctattttttgcttagAACCAGCCCAGGCAGCTGGTCCTTATGTAGACATCATCAAACAACCAAACCAACAAGGC---CATTTCCACTATAAATCTGATGGGCACTCCGAAGGTGGTATCCCTGGTGAGAGGAGCATGGATACTAAAAAAACACATCCCACTATAAAGgtacctaataaagtccttgtatggcaaacaaggaaagaagtcttggtatc Alignment from Exonerate_protein2genome AGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG ctggaggcaagggcacaccatactgcctttttggcctattttttgcttagAACCAGCCCAGGCAGCTGGTCCTTATGTAGACATCATCAAACAACCAAACCAACAAGGC---CATTTCCACTATAAATCTGATGGGCACTCCGAAGGTGGTATCCCTGGTGAGAGGAGCATGGATACTAAAAAAACACATCCCACTATAAAGgtacctaataaagtccttgtatggcaaacaaggaaagaagtcttggtatc Alignment from Exonerate_coding2genome ctggaggcaagggcacaccatactgcctttttggcctattttttgcttagaaccagcccaggcagctggtccttatgtagacatcatcaaacaaccaaaccaacaaggccatttccactataaatctgatgggcactccgaaggtggtatccctggtgagaggagcatggatactaaaaaaacacatcccactataaaggtacctaataaagtccttgtatggcaaacaaggaaagaagtcttggtatc Alignment from GeneWise GACGATCTGTTTCCCCTCATCTTTCCCTCAGAGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG agggcacaccatactgcct---------TTTTGGCCTATTTTTTGCTTAGAACCAGCCCAGGCAGCTGGTCCTTATGTAGACATCATCAAACAACCAAACCAACAAGGC---CATTTCCACTATAAATCTGATGGGCACTCCGAAGGTGGTATCCCTGGTGAGAGGAGCATGGATACTAAAAAAACACATCCCACTATAAAGgtacctaataaagtccttgtatggcaaacaaggaaagaagtcttggtatc #### Rela_ID1129_6 --> 2 - 1 Original Alignment ttCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACc ttactacaaattttggtgctttctctttcagtggctcttctctctctcagtcCCCATGGAGGAGCAGCATGGAGAATATGACTTAAATGCTGTGCGCCTCTGCTTCGAGGTCACAGTGCAGGATCCAGCAGGTGGGCCACTCCTCCTCACCCCTGTCCTCTCACATCCAATTTTTGATAACcgtaagtggcatatgcaaggagtcacatcagcttgctttgctggcctccca Alignment from CESAR ttCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACc ttactacaaattttggtgctttctctttcagtggctcttctctctctcagtcCCCATGGAGGAGCAGCATGGAGAATATGACTTAAATGCTGTGCGCCTCTGCTTCGAGGTCACAGTGCAGGATCCAGCAGGTGGGCCACTCCTCCTCACCCCTGTCCTCTCACATCCAATTTTTGATAACcgtaagtggcatatgcaaggagtcacatcagcttgctttgctggcctccca Alignment from Spaln_aa2Genome TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttactacaaattttggtgctttctctttcagtggctcttctctctctcagTCCCCATGGAGGAGCAGCATGGAGAATATGACTTAAATGCTGTGCGCCTCTGCTTCGAGGTCACAGTGCAGGATCCAGCAGGTGGGCCACTCCTCCTCACCCCTGTCCTCTCACATCCAATTTTTGATAACCgtaagtggcatatgcaaggagtcacatcagcttgctttgctggcctccca Alignment from Spaln_nt2Genome TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttactacaaattttggtgctttctctttcagtggctcttctctctctcagTCCCCATGGAGGAGCAGCATGGAGAATATGACTTAAATGCTGTGCGCCTCTGCTTCGAGGTCACAGTGCAGGATCCAGCAGGTGGGCCACTCCTCCTCACCCCTGTCCTCTCACATCCAATTTTTGATAACCgtaagtggcatatgcaaggagtcacatcagcttgctttgctggcctccca Alignment from Pairagon TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttactacaaattttggtgctttctctttcagtggctcttctctctctcagTCCCCATGGAGGAGCAGCATGGAGAATATGACTTAAATGCTGTGCGCCTCTGCTTCGAGGTCACAGTGCAGGATCCAGCAGGTGGGCCACTCCTCCTCACCCCTGTCCTCTCACATCCAATTTTTGATAACCgtaagtggcatatgcaaggagtcacatcagcttgctttgctggcctccca Alignment from Exonerate_protein2genome TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttactacaaattttggtgctttctctttcagtggctcttctctctctcagTCCCCATGGAGGAGCAGCATGGAGAATATGACTTAAATGCTGTGCGCCTCTGCTTCGAGGTCACAGTGCAGGATCCAGCAGGTGGGCCACTCCTCCTCACCCCTGTCCTCTCACATCCAATTTTTGATAACCgtaagtggcatatgcaaggagtcacatcagcttgctttgctggcctccca Alignment from Exonerate_coding2genome TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttactacaaattttggtgctttctctttcagtggctcttctctctctcagTCCCCATGGAGGAGCAGCATGGAGAATATGACTTAAATGCTGTGCGCCTCTGCTTCGAGGTCACAGTGCAGGATCCAGCAGGTGGGCCACTCCTCCTCACCCCTGTCCTCTCACATCCAATTTTTGATAACCgtaagtggcatatgcaaggagtcacatcagcttgctttgctggcctccca Alignment from GeneWise TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttactacaaattttggtgctttctctttcagtggctcttctctctctcagTCCCCATGGAGGAGCAGCATGGAGAATATGACTTAAATGCTGTGCGCCTCTGCTTCGAGGTCACAGTGCAGGATCCAGCAGGTGGGCCACTCCTCCTCACCCCTGTCCTCTCACATCCAATTTTTGATAACCgtaagtggcatatgcaaggagtcacatcagcttgctttgctggcctccca #### Rfx3_ID5884_11 --> 2 - 0 Original Alignment gtGCCTTGACCCAAGCCATTCGAAATTTCGCAAAAAGCCTAGAAGGTTGGCTTTCAAATGCCATGAACAATATTCCACAGAGAATGATTCAAACCAAG agtttgcatacccttcatctctcacgtttccctaccatcccctcctccaggtGCCTTGACCCAAGCCATTCGGAATTTCGCAAAAAGCCTAGAAGGTTGGCTTTTAAATGCCATGAATAATATCCCCCAGAGAATGATTCAAACCAAGgtgagtttgattttttatatttgctgctgagtagctgactgttcctcagg Alignment from CESAR gtGCCTTGACCCAAGCCATTCGAAATTTCGCAAAAAGCCTAGAAGGTTGGCTTTCAAATGCCATGAACAATATTCCACAGAGAATGATTCAAACCAAG agtttgcatacccttcatctctcacgtttccctaccatcccctcctccaggtGCCTTGACCCAAGCCATTCGGAATTTCGCAAAAAGCCTAGAAGGTTGGCTTTTAAATGCCATGAATAATATCCCCCAGAGAATGATTCAAACCAAGgtgagtttgattttttatatttgctgctgagtagctgactgttcctcagg Alignment from Spaln_aa2Genome GTGCCTTGACCCAAGCCATTCGAAATTTCGCAAAAAGCCTAGAAGGTTGGCTTTCAAATGCCATGAACAATATTCCACAGAGAATGATTCAAACCAAG agtttgcatacccttcatctctcacgtttccctaccatcccctcctccagGTGCCTTGACCCAAGCCATTCGGAATTTCGCAAAAAGCCTAGAAGGTTGGCTTTTAAATGCCATGAATAATATCCCCCAGAGAATGATTCAAACCAAGgtgagtttgattttttatatttgctgctgagtagctgactgttcctcagg Alignment from Spaln_nt2Genome GTGCCTTGACCCAAGCCATTCGAAATTTCGCAAAAAGCCTAGAAGGTTGGCTTTCAAATGCCATGAACAATATTCCACAGAGAATGATTCAAACCAAG agtttgcatacccttcatctctcacgtttccctaccatcccctcctccagGTGCCTTGACCCAAGCCATTCGGAATTTCGCAAAAAGCCTAGAAGGTTGGCTTTTAAATGCCATGAATAATATCCCCCAGAGAATGATTCAAACCAAGgtgagtttgattttttatatttgctgctgagtagctgactgttcctcagg Alignment from Pairagon GTGCCTTGACCCAAGCCATTCGAAATTTCGCAAAAAGCCTAGAAGGTTGGCTTTCAAATGCCATGAACAATATTCCACAGAGAATGATTCAAACCAAG agtttgcatacccttcatctctcacgtttccctaccatcccctcctccagGTGCCTTGACCCAAGCCATTCGGAATTTCGCAAAAAGCCTAGAAGGTTGGCTTTTAAATGCCATGAATAATATCCCCCAGAGAATGATTCAAACCAAGgtgagtttgattttttatatttgctgctgagtagctgactgttcctcagg Alignment from Exonerate_protein2genome GTGCCTTGACCCAAGCCATTCGAAATTTCGCAAAAAGCCTAGAAGGTTGGCTTTCAAATGCCATGAACAATATTCCACAGAGAATGATTCAAACCAAG agtttgcatacccttcatctctcacgtttccctaccatcccctcctccagGTGCCTTGACCCAAGCCATTCGGAATTTCGCAAAAAGCCTAGAAGGTTGGCTTTTAAATGCCATGAATAATATCCCCCAGAGAATGATTCAAACCAAGgtgagtttgattttttatatttgctgctgagtagctgactgttcctcagg Alignment from Exonerate_coding2genome GTGCCTTGACCCAAGCCATTCGAAATTTCGCAAAAAGCCTAGAAGGTTGGCTTTCAAATGCCATGAACAATATTCCACAGAGAATGATTCAAACCAAG agtttgcatacccttcatctctcacgtttccctaccatcccctcctccagGTGCCTTGACCCAAGCCATTCGGAATTTCGCAAAAAGCCTAGAAGGTTGGCTTTTAAATGCCATGAATAATATCCCCCAGAGAATGATTCAAACCAAGgtgagtttgattttttatatttgctgctgagtagctgactgttcctcagg Alignment from GeneWise GTGCCTTGACCCAAGCCATTCGAAATTTCGCAAAAAGCCTAGAAGGTTGGCTTTCAAATGCCATGAACAATATTCCACAGAGAATGATTCAAACCAAG agtttgcatacccttcatctctcacgtttccctaccatcccctcctccagGTGCCTTGACCCAAGCCATTCGGAATTTCGCAAAAAGCCTAGAAGGTTGGCTTTTAAATGCCATGAATAATATCCCCCAGAGAATGATTCAAACCAAGgtgagtttgattttttatatttgctgctgagtagctgactgttcctcagg #### Rhod_ID527_4 --> 0 - 0 Original Alignment TGGTACCCAGAGGTGACACATTTCTGCAAGGGAGTGCCCATCATTGTTGTGGGCTGCAAGATAGACCTGCGTAAGGACAAGGTGCTGGTGAACAACCTGCGGAAGAAAAGACTGGAGCCCGTGACCTACCACAGG agcaatcaattcctctgggaagggggtatctttcaaaatctaatccccagTGGTATCCAGAGGTAACATATTTCTGTAAG---GTACCAATCATTGTTGTTGGTTGCAAGATGGACCTGAGGAAGGACAAAGTGCTGGTTATTAACCTACGGAAAAAGCGACTGGAGACTGTGACGTACCATCAGgcgagtagaaagccagttatcattggtgtcttcctgctctgatagtgtca Alignment from CESAR TGGTACCCAGAGGTGACACATTTCTGCAAGGGAGTGCCCATCATTGTTGTGGGCTGCAAGATAGACCTGCGTAAGGACAAGGTGCTGGTGAACAACCTGCGGAAGAAAAGACTGGAGCCCGTGACCTACCACAGG agcaatcaattcctctgggaagggggtatctttcaaaatctaatccccagTGGTATCCAGAGGTAACATATTTCTGTAAG---GTACCAATCATTGTTGTTGGTTGCAAGATGGACCTGAGGAAGGACAAAGTGCTGGTTATTAACCTACGGAAAAAGCGACTGGAGACTGTGACGTACCATCAGgcgagtagaaagccagttatcattggtgtcttcctgctctgatagtgtca Alignment from Spaln_aa2Genome TGGTACCCAGAGGTGACACATTTCTGCAAGGGAGTGCCCATCATTGTTGTGGGCTGCAAGATAGACCTGCGTAAGGACAAGGTGCTGGTGAACAACCTGCGGAAGAAAAGACTGGAGCCCGTGACCTACCACAGG agcaatcaattcctctgggaagggggtatctttcaaaatctaatccccagTGGTATCCAGAGGTAACATATTTCTGTAAG---GTACCAATCATTGTTGTTGGTTGCAAGATGGACCTGAGGAAGGACAAAGTGCTGGTTATTAACCTACGGAAAAAGCGACTGGAGACTGTGACGTACCATCAGgcgagtagaaagccagttatcattggtgtcttcctgctctgatagtgtca Alignment from Spaln_nt2Genome TGGTACCCAGAGGTGACACATTTCTGCAAGGGAGTGCCCATCATTGTTGTGGGCTGCAAGATAGACCTGCGTAAGGACAAGGTGCTGGTGAACAACCTGCGGAAGAAAAGACTGGAGCCCGTGACCTACCACAGG agcaatcaattcctctgggaagggggtatctttcaaaatctaatccccagTGGTATCCAGAGGTAACATATTTCTGTAAG---GTACCAATCATTGTTGTTGGTTGCAAGATGGACCTGAGGAAGGACAAAGTGCTGGTTATTAACCTACGGAAAAAGCGACTGGAGACTGTGACGTACCATCAGgcgagtagaaagccagttatcattggtgtcttcctgctctgatagtgtca Alignment from Pairagon TGGTACCCAGAGGTGACACATTTCTGCAAGGGAGTGCCCATCATTGTTGTGGGCTGCAAGATAGACCTGCGTAAGGACAAGGTGCTGGTGAACAACCTGCGGAAGAAAAGACTGGAGCCCGTGACCTACCACAGG agcaatcaattcctctgggaagggggtatctttcaaaatctaatccccagTGGTATCCAGAGGTAACATATTTCTGTAAG---GTACCAATCATTGTTGTTGGTTGCAAGATGGACCTGAGGAAGGACAAAGTGCTGGTTATTAACCTACGGAAAAAGCGACTGGAGACTGTGACGTACCATCAGgcgagtagaaagccagttatcattggtgtcttcctgctctgatagtgtca Alignment from Exonerate_protein2genome TGGTACCCAGAGGTGACACATTTCTGCAAGGGAGTGCCCATCATTGTTGTGGGCTGCAAGATAGACCTGCGTAAGGACAAGGTGCTGGTGAACAACCTGCGGAAGAAAAGACTGGAGCCCGTGACCTACCACAGG agcaatcaattcctctgggaagggggtatctttcaaaatctaatccccagTGGTATCCAGAGGTAACATATTTCTGTAAG---GTACCAATCATTGTTGTTGGTTGCAAGATGGACCTGAGGAAGGACAAAGTGCTGGTTATTAACCTACGGAAAAAGCGACTGGAGACTGTGACGTACCATCAGgcgagtagaaagccagttatcattggtgtcttcctgctctgatagtgtca Alignment from Exonerate_coding2genome TGGTACCCAGAGGTGACACATTTCTGCAAGGGAGTGCCCATCATTGTTGTGGGCTGCAAGATAGACCTGCGTAAGGACAAGGTGCTGGTGAACAACCTGCGGAAGAAAAGACTGGAGCCCGTGACCTACCACAGGGGCCACGATATGGCAAGGTCTGTGGGAGCGGTGGCCTATCTTGAGTGTTC agcaatcaattcctctgggaagggggtatctttcaaaatctaatccccagTGGTATCCAGAGGTAACATATTTCTGTAAG---GTACCAATCATTGTTGTTGGTTGCAAGATGGACCTGAGGAAGGACAAAGTGCTGGTTATTAACCTACGGAAAAAGCGACTGGAGACTGTGACGTACCATCAGGCGAGTAGAAAGCCAGTTATCATTGGTGTCTTCCTGCTCTGATAGTGTCA Alignment from GeneWise TGGTACCCAGAGGTGACACATTTCTGCAAGGGAGTGCCCATCATTGTTGTGGGCTGCAAGATAGACCTGCGTAAGGACAAGGTGCTGGTGAACAACCTGCGGAAGAAAAGACTGGAGCCCGTGACCTACCACAGG--------------- agcaatcaattcctctgggaagggggtatctttcaaaatctaatccccagTGGTATCCAGAGGTAACATATTTCTGTAAG---GTACCAATCATTGTTGTTGGTTGCAAGATGGACCTGAGGAAGGACAAAGTGCTGGTTATTAACCTACGGAAAAAGCGACTGGAGACTGTGACGTACCATCAGGCGAGTAGAAAGCCAgttatcattggtgtcttcctgctctgatagtgtca #### Rorb_ID4536_6 --> 0 - 1 Original Alignment TCCAGGGAGGCTCTGTGGCAGCAGTGTGCCATCCAGATCACCCATGCTATCCAGTACGTGGTGGAGTTCGCCAAGCGGATAACAGGCTTCATGGAGCTGTGTCAGAACGATCAGATCTTACTTCTGAAGTCAg tacccgctggagttttgtctagccatgcggtgacaattcgctcccttcagTCAATGGAGGCCCTATGGCAGCAGTGTGCCATCCAGATCACCCATGCTATCCAGTATGTGGTTGAGTTTGCCAAGCGGATCACAGGCTTTATGGAATTATGTCAGAAGGATCAGACCTTACTTCTGAAATCAggttacactcataaatgaaggctccaatcacattactaggttcctggaaca Alignment from CESAR TCCAGGGAGGCTCTGTGGCAGCAGTGTGCCATCCAGATCACCCATGCTATCCAGTACGTGGTGGAGTTCGCCAAGCGGATAACAGGCTTCATGGAGCTGTGTCAGAACGATCAGATCTTACTTCTGAAGTCAg tacccgctggagttttgtctagccatgcggtgacaattcgctcccttcagTCAATGGAGGCCCTATGGCAGCAGTGTGCCATCCAGATCACCCATGCTATCCAGTATGTGGTTGAGTTTGCCAAGCGGATCACAGGCTTTATGGAATTATGTCAGAAGGATCAGACCTTACTTCTGAAATCAggttacactcataaatgaaggctccaatcacattactaggttcctggaaca Alignment from Spaln_aa2Genome TCCAGGGAGGCTCTGTGGCAGCAGTGTGCCATCCAGATCACCCATGCTATCCAGTACGTGGTGGAGTTCGCCAAGCGGATAACAGGCTTCATGGAGCTGTGTCAGAACGATCAGATCTTACTTCTGAAGTCAG tacccgctggagttttgtctagccatgcggtgacaattcgctcccttcagTCAATGGAGGCCCTATGGCAGCAGTGTGCCATCCAGATCACCCATGCTATCCAGTATGTGGTTGAGTTTGCCAAGCGGATCACAGGCTTTATGGAATTATGTCAGAAGGATCAGACCTTACTTCTGAAATCAGgttacactcataaatgaaggctccaatcacattactaggttcctggaaca Alignment from Spaln_nt2Genome TCCAGGGAGGCTCTGTGGCAGCAGTGTGCCATCCAGATCACCCATGCTATCCAGTACGTGGTGGAGTTCGCCAAGCGGATAACAGGCTTCATGGAGCTGTGTCAGAACGATCAGATCTTACTTCTGAAGTCAG tacccgctggagttttgtctagccatgcggtgacaattcgctcccttcagTCAATGGAGGCCCTATGGCAGCAGTGTGCCATCCAGATCACCCATGCTATCCAGTATGTGGTTGAGTTTGCCAAGCGGATCACAGGCTTTATGGAATTATGTCAGAAGGATCAGACCTTACTTCTGAAATCAGgttacactcataaatgaaggctccaatcacattactaggttcctggaaca Alignment from Pairagon TCCAGGGAGGCTCTGTGGCAGCAGTGTGCCATCCAGATCACCCATGCTATCCAGTACGTGGTGGAGTTCGCCAAGCGGATAACAGGCTTCATGGAGCTGTGTCAGAACGATCAGATCTTACTTCTGAAGTCAG tacccgctggagttttgtctagccatgcggtgacaattcgctcccttcagTCAATGGAGGCCCTATGGCAGCAGTGTGCCATCCAGATCACCCATGCTATCCAGTATGTGGTTGAGTTTGCCAAGCGGATCACAGGCTTTATGGAATTATGTCAGAAGGATCAGACCTTACTTCTGAAATCAGgttacactcataaatgaaggctccaatcacattactaggttcctggaaca Alignment from Exonerate_protein2genome TCCAGGGAGGCTCTGTGGCAGCAGTGTGCCATCCAGATCACCCATGCTATCCAGTACGTGGTGGAGTTCGCCAAGCGGATAACAGGCTTCATGGAGCTGTGTCAGAACGATCAGATCTTACTTCTGAAGTCAG tacccgctggagttttgtctagccatgcggtgacaattcgctcccttcagTCAATGGAGGCCCTATGGCAGCAGTGTGCCATCCAGATCACCCATGCTATCCAGTATGTGGTTGAGTTTGCCAAGCGGATCACAGGCTTTATGGAATTATGTCAGAAGGATCAGACCTTACTTCTGAAATCAGgttacactcataaatgaaggctccaatcacattactaggttcctggaaca Alignment from Exonerate_coding2genome TCCAGGGAGGCTCTGTGGCAGCAGTGTGCCATCCAGATCACCCATGCTATCCAGTACGTGGTGGAGTTCGCCAAGCGGATAACAGGCTTCATGGAGCTGTGTCAGAACGATCAGATCTTACTTCTGAAGTCAG tacccgctggagttttgtctagccatgcggtgacaattcgctcccttcagTCAATGGAGGCCCTATGGCAGCAGTGTGCCATCCAGATCACCCATGCTATCCAGTATGTGGTTGAGTTTGCCAAGCGGATCACAGGCTTTATGGAATTATGTCAGAAGGATCAGACCTTACTTCTGAAATCAGgttacactcataaatgaaggctccaatcacattactaggttcctggaaca Alignment from GeneWise TCCAGGGAGGCTCTGTGGCAGCAGTGTGCCATCCAGATCACCCATGCTATCCAGTACGTGGTGGAGTTCGCCAAGCGGATAACAGGCTTCATGGAGCTGTGTCAGAACGATCAGATCTTACTTCTGAAGTCAG tacccgctggagttttgtctagccatgcggtgacaattcgctcccttcagTCAATGGAGGCCCTATGGCAGCAGTGTGCCATCCAGATCACCCATGCTATCCAGTATGTGGTTGAGTTTGCCAAGCGGATCACAGGCTTTATGGAATTATGTCAGAAGGATCAGACCTTACTTCTGAAATCAGgttacactcataaatgaaggctccaatcacattactaggttcctggaaca #### Rorb_ID4547_2 --> 2 - 0 Original Alignment caCAAATTGAAGTGATACCATGCAAAATTTGTGGCGATAAATCCTCCGGGATCCACTACGGAGTCATCACGTGTGAAGGCTGCAAG agtcagaaagcaagttgctttccaattgtcctagttgtttttttctctagccCAAATTGAGGTGATACCATGCAAAATTTGTGGTGATAAATCTTCTGGGATCCATTTTGGGGTTATCACATGTGGAGGCTGCAAGgtaaatatgctcaaactggtaagtggggacaaaaaatcttatataattta Alignment from CESAR caCAAATTGAAGTGATACCATGCAAAATTTGTGGCGATAAATCCTCCGGGATCCACTACGGAGTCATCACGTGTGAAGGCTGCAAG agtcagaaagcaagttgctttccaattgtcctagttgtttttttctctagccCAAATTGAGGTGATACCATGCAAAATTTGTGGTGATAAATCTTCTGGGATCCATTTTGGGGTTATCACATGTGGAGGCTGCAAGgtaaatatgctcaaactggtaagtggggacaaaaaatcttatataattta Alignment from Spaln_aa2Genome CACAAATTGAAGTGATACCATGCAAAATTTGTGGCGATAAATCCTCCGGGATCCACTACGGAGTCATCACGTGTGAAGGCTGCAAG agtcagaaagcaagttgctttccaattgtcctagttgtttttttctctagCCCAAATTGAGGTGATACCATGCAAAATTTGTGGTGATAAATCTTCTGGGATCCATTTTGGGGTTATCACATGTGGAGGCTGCAAGgtaaatatgctcaaactggtaagtggggacaaaaaatcttatataattta Alignment from Spaln_nt2Genome CACAAATTGAAGTGATACCATGCAAAATTTGTGGCGATAAATCCTCCGGGATCCACTACGGAGTCATCACGTGTGAAGGCTGCAAG agtcagaaagcaagttgctttccaattgtcctagttgtttttttctctagCCCAAATTGAGGTGATACCATGCAAAATTTGTGGTGATAAATCTTCTGGGATCCATTTTGGGGTTATCACATGTGGAGGCTGCAAGgtaaatatgctcaaactggtaagtggggacaaaaaatcttatataattta Alignment from Pairagon CACAAATTGAAGTGATACCATGCAAAATTTGTGGCGATAAATCCTCCGGGATCCACTACGGAGTCATCACGTGTGAAGGCTGCAAG agtcagaaagcaagttgctttccaattgtcctagttgtttttttctctagCCCAAATTGAGGTGATACCATGCAAAATTTGTGGTGATAAATCTTCTGGGATCCATTTTGGGGTTATCACATGTGGAGGCTGCAAGgtaaatatgctcaaactggtaagtggggacaaaaaatcttatataattta Alignment from Exonerate_protein2genome CACAAATTGAAGTGATACCATGCAAAATTTGTGGCGATAAATCCTCCGGGATCCACTACGGAGTCATCACGTGTGAAGGCTGCAAG agtcagaaagcaagttgctttccaattgtcctagttgtttttttctctagCCCAAATTGAGGTGATACCATGCAAAATTTGTGGTGATAAATCTTCTGGGATCCATTTTGGGGTTATCACATGTGGAGGCTGCAAGgtaaatatgctcaaactggtaagtggggacaaaaaatcttatataattta Alignment from Exonerate_coding2genome CACAAATTGAAGTGATACCATGCAAAATTTGTGGCGATAAATCCTCCGGGATCCACTACGGAGTCATCACGTGTGAAGGCTGCAAG agtcagaaagcaagttgctttccaattgtcctagttgtttttttctctagCCCAAATTGAGGTGATACCATGCAAAATTTGTGGTGATAAATCTTCTGGGATCCATTTTGGGGTTATCACATGTGGAGGCTGCAAGgtaaatatgctcaaactggtaagtggggacaaaaaatcttatataattta Alignment from GeneWise CACAAATTGAAGTGATACCATGCAAAATTTGTGGCGATAAATCCTCCGGGATCCACTACGGAGTCATCACGTGTGAAGGCTGCAAG agtcagaaagcaagttgctttccaattgtcctagttgtttttttctctagCCCAAATTGAGGTGATACCATGCAAAATTTGTGGTGATAAATCTTCTGGGATCCATTTTGGGGTTATCACATGTGGAGGCTGCAAGgtaaatatgctcaaactggtaagtggggacaaaaaatcttatataattta #### Rpp30_ID7084_6 --> 0 - 0 Original Alignment GTTGCTTGTACACATTTAGATGTGGATTTAGTCTGTATAACTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTTAATGTG accccaactggctacttcaattttcttgtttctcctcttccctatgctagGCTGCTTGTACACATCTAGATGTGGATTTAGTCTGTATTGCTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTGAATGTGgtgagcgttacactagttgctcaaaaggtcctgggcaacttaatccctca Alignment from CESAR GTTGCTTGTACACATTTAGATGTGGATTTAGTCTGTATAACTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTTAATGTG accccaactggctacttcaattttcttgtttctcctcttccctatgctagGCTGCTTGTACACATCTAGATGTGGATTTAGTCTGTATTGCTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTGAATGTGgtgagcgttacactagttgctcaaaaggtcctgggcaacttaatccctca Alignment from Spaln_aa2Genome GTTGCTTGTACACATTTAGATGTGGATTTAGTCTGTATAACTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTTAATGTG accccaactggctacttcaattttcttgtttctcctcttccctatgctagGCTGCTTGTACACATCTAGATGTGGATTTAGTCTGTATTGCTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTGAATGTGgtgagcgttacactagttgctcaaaaggtcctgggcaacttaatccctca Alignment from Spaln_nt2Genome GTTGCTTGTACACATTTAGATGTGGATTTAGTCTGTATAACTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTTAATGTG accccaactggctacttcaattttcttgtttctcctcttccctatgctagGCTGCTTGTACACATCTAGATGTGGATTTAGTCTGTATTGCTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTGAATGTGgtgagcgttacactagttgctcaaaaggtcctgggcaacttaatccctca Alignment from Pairagon GTTGCTTGTACACATTTAGATGTGGATTTAGTCTGTATAACTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTTAATGTG accccaactggctacttcaattttcttgtttctcctcttccctatgctagGCTGCTTGTACACATCTAGATGTGGATTTAGTCTGTATTGCTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTGAATGTGgtgagcgttacactagttgctcaaaaggtcctgggcaacttaatccctca Alignment from Exonerate_protein2genome GTTGCTTGTACACATTTAGATGTGGATTTAGTCTGTATAACTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTTAATGTG accccaactggctacttcaattttcttgtttctcctcttccctatgctagGCTGCTTGTACACATCTAGATGTGGATTTAGTCTGTATTGCTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTGAATGTGgtgagcgttacactagttgctcaaaaggtcctgggcaacttaatccctca Alignment from Exonerate_coding2genome GTTGCTTGTACACATTTAGATGTGGATTTAGTCTGTATAACTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTTAATGTG accccaactggctacttcaattttcttgtttctcctcttccctatgctagGCTGCTTGTACACATCTAGATGTGGATTTAGTCTGTATTGCTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTGAATGTGgtgagcgttacactagttgctcaaaaggtcctgggcaacttaatccctca Alignment from GeneWise GTTGCTTGTACACATTTAGATGTGGATTTAGTCTGTATAACTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTTAATGTG accccaactggctacttcaattttcttgtttctcctcttccctatgctagGCTGCTTGTACACATCTAGATGTGGATTTAGTCTGTATTGCTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTGAATGTGgtgagcgttacactagttgctcaaaaggtcctgggcaacttaatccctca #### Rpp30_ID7090_10 --> 1 - 1 Original Alignment aGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCTGCCGTGTCCACAAATTGCAGAGCTGTATTTCTCCATGGAg gtttcataggtacataaacattgtgtgtggcacctgaactctctgcgtagaGGACTGCTCTTTGGGCTTTCTGAAAATGATGGTAAGGCAGCTGCGTCCACAAATTGCAGAGCCGTATTTCTTCATGGAggtgagtagtatgtctttttttgttgcatacatagcatgccaggtccaatg Alignment from CESAR aGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCTGCCGTGTCCACAAATTGCAGAGCTGTATTTCTCCATGGAg gtttcataggtacataaacattgtgtgtggcacctgaactctctgcgtagaGGACTGCTCTTTGGGCTTTCTGAAAATGATGGTAAGGCAGCTGCGTCCACAAATTGCAGAGCCGTATTTCTTCATGGAggtgagtagtatgtctttttttgttgcatacatagcatgccaggtccaatg Alignment from Spaln_aa2Genome AGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCTGCCGTGTCCACAAATTGCAGAGCTGTATTTCTCCATGGAG gtttcataggtacataaacattgtgtgtggcacctgaactctctgcgtagAGGACTGCTCTTTGGGCTTTCTGAAAATGATGGTAAGGCAGCTGCGTCCACAAATTGCAGAGCCGTATTTCTTCATGGAGgtgagtagtatgtctttttttgttgcatacatagcatgccaggtccaatg Alignment from Spaln_nt2Genome AGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCTGCCGTGTCCACAAATTGCAGAGCTGTATTTCTCCATGGAG gtttcataggtacataaacattgtgtgtggcacctgaactctctgcgtagAGGACTGCTCTTTGGGCTTTCTGAAAATGATGGTAAGGCAGCTGCGTCCACAAATTGCAGAGCCGTATTTCTTCATGGAGgtgagtagtatgtctttttttgttgcatacatagcatgccaggtccaatg Alignment from Pairagon AGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCTGCCGTGTCCACAAATTGCAGAGCTGTATTTCTCCATGGAG gtttcataggtacataaacattgtgtgtggcacctgaactctctgcgtagAGGACTGCTCTTTGGGCTTTCTGAAAATGATGGTAAGGCAGCTGCGTCCACAAATTGCAGAGCCGTATTTCTTCATGGAGgtgagtagtatgtctttttttgttgcatacatagcatgccaggtccaatg Alignment from Exonerate_protein2genome AGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCTGCCGTGTCCACAAATTGCAGAGCTGTATTTCTCCATGGAG gtttcataggtacataaacattgtgtgtggcacctgaactctctgcgtagAGGACTGCTCTTTGGGCTTTCTGAAAATGATGGTAAGGCAGCTGCGTCCACAAATTGCAGAGCCGTATTTCTTCATGGAGgtgagtagtatgtctttttttgttgcatacatagcatgccaggtccaatg Alignment from Exonerate_coding2genome AGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCTGCCGTGTCCACAAATTGCAGAGCTGTATTTCTCCATGGAG gtttcataggtacataaacattgtgtgtggcacctgaactctctgcgtagAGGACTGCTCTTTGGGCTTTCTGAAAATGATGGTAAGGCAGCTGCGTCCACAAATTGCAGAGCCGTATTTCTTCATGGAGgtgagtagtatgtctttttttgttgcatacatagcatgccaggtccaatg Alignment from GeneWise AGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCTGCCGTGTCCACAAATTGCAGAGCTGTATTTCTCCATGGAG gtttcataggtacataaacattgtgtgtggcacctgaactctctgcgtagAGGACTGCTCTTTGGGCTTTCTGAAAATGATGGTAAGGCAGCTGCGTCCACAAATTGCAGAGCCGTATTTCTTCATGGAGgtgagtagtatgtctttttttgttgcatacatagcatgccaggtccaatg #### Rps6kb2_ID375_7 --> 1 - 1 Original Alignment cTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGg gtctgcaggatacctactgtagcgggtatcacagagccatttttccacagtTTCTACCTTGCAGAGATCACTTTGGCATTAGGCCATCTCCATTTCCATAGCATCATTTACCGTGATCACAAGCCAGGAAAA---ATGCTCACCAGTCAGggtggggttcacatcactgtgtggtgagcttaaaacttagttttgccagtg Alignment from CESAR cTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGg gtctgcaggatacctactgtagcgggtatcacagagccatttttccacagtTTCTACCTTGCAGAGATCACTTTGGCATTAGGCCATCTCCATTTCCATAGCATCATTTACCGTGATCACAAGCCAGGAAAA---ATGCTCACCAGTCAGggtggggttcacatcactgtgtggtgagcttaaaacttagttttgccagtg Alignment from Spaln_aa2Genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG gtctgcaggatacctactgtagcgggtatcacagagccatttttccacagTTTCTACCTTGCAGAGATCACTTTGGCATTAGGCCATCTCCATTTCCATAGCATCATTTACCGTGATCACAAGCCAGGAAAA---ATGCTCACCAGTCAGGgtggggttcacatcactgtgtggtgagcttaaaacttagttttgccagtg Alignment from Spaln_nt2Genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG gtctgcaggatacctactgtagcgggtatcacagagccatttttccacagTTTCTACCTTGCAGAGATCACTTTGGCATTAGGCCATCTCCATTTCCATAGCATCATTTACCGTGATCACAAGCCAG-GAAAA--ATGCTCACCAGTCAGGgtggggttcacatcactgtgtggtgagcttaaaacttagttttgccagtg Alignment from Pairagon CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG gtctgcaggatacctactgtagcgggtatcacagagccatttttccacagTTTCTACCTTGCAGAGATCACTTTGGCATTAGGCCATCTCCATTTCCATAGCATCATTTACCGTGATCACAAGCCAGGAAA---AATGCTCACCAGTCAGGgtggggttcacatcactgtgtggtgagcttaaaacttagttttgccagtg Alignment from Exonerate_protein2genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG gtctgcaggatacctactgtagcgggtatcacagagccatttttccacagTTTCTACCTTGCAGAGATCACTTTGGCATTAGGCCATCTCCATTTCCATAGCATCATTTACCGTGATCACAAGCCAGGAAAA---ATGCTCACCAGTCAGGgtggggttcacatcactgtgtggtgagcttaaaacttagttttgccagtg Alignment from Exonerate_coding2genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG gtctgcaggatacctactgtagcgggtatcacagagccatttttccacagTTTCTACCTTGCAGAGATCACTTTGGCATTAGGCCATCTCCATTTCCATAGCATCATTTACCGTGATCACAAGCCAGGAAAA---ATGCTCACCAGTCAGGgtggggttcacatcactgtgtggtgagcttaaaacttagttttgccagtg Alignment from GeneWise CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG gtctgcaggatacctactgtagcgggtatcacagagccatttttccacagTTTCTACCTTGCAGAGATCACTTTGGCATTAGGCCATCTCCATTTCCATAGCATCATTTACCGTGATCACAAGCCAGGAAAA---ATGCTCACCAGTCAGGgtggggttcacatcactgtgtggtgagcttaaaacttagttttgccagtg #### Rrp12_ID8294_29 --> 2 - 1 Original Alignment ccACCCAGCCTGGGCCTGGGCGGGGCAAGAAGAGGGACCATGGCTTCAAGTTGAGTGCTGATGGCCGGCTGATCATACGGGAGGAGGAAGATGGAAACAAGGTGGAGGAAGAAGATGGCACTAAAg acctaagtcccttagtcttgcaaccaagtgccccttccccttcctctcagccGCCCAGCCTGGGCCAGGGCGAGGCAAGAAGCGGGAACAGGGTTTTAAGTTGAGTTCTGATGGACGCCTTATCATACAGGAAGAAAAAGATGGAAATAAGGCAGAGGAAGAAGATGGTACCAGAagtaagtgcaggttcagtgtacacaagtcatatgtttagataaacaccatc Alignment from CESAR ccACCCAGCCTGGGCCTGGGCGGGGCAAGAAGAGGGACCATGGCTTCAAGTTGAGTGCTGATGGCCGGCTGATCATACGGGAGGAGGAAGATGGAAACAAGGTGGAGGAAGAAGATGGCACTAAAg acctaagtcccttagtcttgcaaccaagtgccccttccccttcctctcagccGCCCAGCCTGGGCCAGGGCGAGGCAAGAAGCGGGAACAGGGTTTTAAGTTGAGTTCTGATGGACGCCTTATCATACAGGAAGAAAAAGATGGAAATAAGGCAGAGGAAGAAGATGGTACCAGAagtaagtgcaggttcagtgtacacaagtcatatgtttagataaacaccatc Alignment from Spaln_aa2Genome CCACCCAGCCTGGGCCTGGGCGGGGCAAGAAGAGGGACCATGGCTTCAAGTTGAGTGCTGATGGCCGGCTGATCATACGGGAGGAGGAAGATGGAAACAAGGTGGAGGAAGAAGATGGCACTAAAG acctaagtcccttagtcttgcaaccaagtgccccttccccttcctctcagCCGCCCAGCCTGGGCCAGGGCGAGGCAAGAAGCGGGAACAGGGTTTTAAGTTGAGTTCTGATGGACGCCTTATCATACAGGAAGAAAAAGATGGAAATAAGGCAGAGGAAGAAGATGGTACCAGAAgtaagtgcaggttcagtgtacacaagtcatatgtttagataaacaccatc Alignment from Spaln_nt2Genome CCACCCAGCCTGGGCCTGGGCGGGGCAAGAAGAGGGACCATGGCTTCAAGTTGAGTGCTGATGGCCGGCTGATCATACGGGAGGAGGAAGATGGAAACAAGGTGGAGGAAGAAGATGGCACTAAAG acctaagtcccttagtcttgcaaccaagtgccccttccccttcctctcagCCGCCCAGCCTGGGCCAGGGCGAGGCAAGAAGCGGGAACAGGGTTTTAAGTTGAGTTCTGATGGACGCCTTATCATACAGGAAGAAAAAGATGGAAATAAGGCAGAGGAAGAAGATGGTACCAGAAgtaagtgcaggttcagtgtacacaagtcatatgtttagataaacaccatc Alignment from Pairagon CCACCCAGCCTGGGCCTGGGCGGGGCAAGAAGAGGGACCATGGCTTCAAGTTGAGTGCTGATGGCCGGCTGATCATACGGGAGGAGGAAGATGGAAACAAGGTGGAGGAAGAAGATGGCACTAAAG acctaagtcccttagtcttgcaaccaagtgccccttccccttcctctcagCCGCCCAGCCTGGGCCAGGGCGAGGCAAGAAGCGGGAACAGGGTTTTAAGTTGAGTTCTGATGGACGCCTTATCATACAGGAAGAAAAAGATGGAAATAAGGCAGAGGAAGAAGATGGTACCAGAAgtaagtgcaggttcagtgtacacaagtcatatgtttagataaacaccatc Alignment from Exonerate_protein2genome CCACCCAGCCTGGGCCTGGGCGGGGCAAGAAGAGGGACCATGGCTTCAAGTTGAGTGCTGATGGCCGGCTGATCATACGGGAGGAGGAAGATGGAAACAAGGTGGAGGAAGAAGATGGCACTAAAG acctaagtcccttagtcttgcaaccaagtgccccttccccttcctctcagCCGCCCAGCCTGGGCCAGGGCGAGGCAAGAAGCGGGAACAGGGTTTTAAGTTGAGTTCTGATGGACGCCTTATCATACAGGAAGAAAAAGATGGAAATAAGGCAGAGGAAGAAGATGGTACCAGAAgtaagtgcaggttcagtgtacacaagtcatatgtttagataaacaccatc Alignment from Exonerate_coding2genome acctaagtcccttagtcttgcaaccaagtgccccttccccttcctctcagccgcccagcctgggccagggcgaggcaagaagcgggaacagggttttaagttgagttctgatggacgccttatcatacaggaagaaaaagatggaaataaggcagaggaagaagatggtaccagaagtaagtgcaggttcagtgtacacaagtcatatgtttagataaacaccatc Alignment from GeneWise CCACCCAGCCTGGGCCTGGGCGGGGCAAGAAGAGGGACCATGGCTTCAAGTTGAGTGCTGATGGCCGGCTGATCATACGGGAGGAGGAAGATGGAAACAAGGTGGAGGAAGAAGATGGCACTAAAG acctaagtcccttagtcttgcaaccaagtgccccttccccttcctctcagCCGCCCAGCCTGGGCCAGGGCGAGGCAAGAAGCGGGAACAGGGTTTTAAGTTGAGTTCTGATGGACGCCTTATCATACAGGAAGAAAAAGATGGAAATAAGGCAGAGGAAGAAGATGGTACCAGAAgtaagtgcaggttcagtgtacacaagtcatatgtttagataaacaccatc #### Rrp12_ID8295_28 --> 1 - 1 Original Alignment cATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTg gtaagttagggcagggttgcgtcctattctcacacgaccctcggccacagcATTGAGGAAATTTCAGCTGACTCAAAGGATGAGTTTGAGGAAGAACAAAGAGGCCGAGGCAAAGAGCAA------TTGGTC------AGGAGCCGATCATGG---AAGGATGGAGGTGGT---GCACCTCTCAATTTC------CCAAAAGTAGCACATCGTATCCAGggtgggaaggggtaaggatgccctactttgctcggggggtcaagggttagg Alignment from CESAR cATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTg gtaagttagggcagggttgcgtcctattctcacacgaccctcggccacagcATTGAGGAAATTTCAGCTGACTCAAAGGATGAGTTTGAGGAAGAACAAAGAGGCCGAGGCAAAGAGCAA------TTGGTC------AGGAGCCGATCATGG---AAGGATGGAGGTGGT---GCACCTCTCAATTTC------CCAAAAGTAGCACATCGTATCCAGggtgggaaggggtaaggatgccctactttgctcggggggtcaagggttagg Alignment from Spaln_aa2Genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG gtaagttagggcagggttgcgtcctattctcacacgaccctcggccacagCATTGAGGAAATTTCAGCTGACTCAAAGGATGAGTTTGAGGAAGAACAAAGAGGCCGAGGCAAAGAGCAA------TTGGTC------AGGAGCCGATCATGG---AAGGATGGAGGTGGT---GCACCTCTCAATTTC------CCAAAAGTAGCACATCGTATCCAGGgtgggaaggggtaaggatgccctactttgctcggggggtcaagggttagg Alignment from Spaln_nt2Genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG gtaagttagggcagggttgcgtcctattctcacacgaccctcggccacagCATTGAGGAAATTTCAGCTGACTCAAAGGATGAGTTTGAGGAAGAACAAAGAGGCCGAGGCAAAGAGC------AATTGG------TCAGGAGCCGATCATG---GAAGGATGGAGGTGG---TGCACCTCTCAATTTC------CCAAAAGTAGCACATCGTATCCAGGgtgggaaggggtaaggatgccctactttgctcggggggtcaagggttagg Alignment from Pairagon CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG gtaagttagggcagggttgcgtcctattctcacacgaccctcggccacagCATTGAGGAAATTTCAGCTGACTCAAAGGATGAGTTTGAGGAAGAACAAAGAGGCCGAGGCAAAGAGCAA-------------------------------------------------------------------------------------------------TTGgtcaggagccgatcatggaaggatggaggtggtgcacctctcaatttcccaaaagtagcacatcgtatccagggtgggaaggggtaaggatgccctactttgctcggggggtcaagggttagg Alignment from Exonerate_protein2genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG gtaagttagggcagggttgcgtcctattctcacacgaccctcggccacagCATTGAGGAAATTTCAGCTGACTCAAAGGATGAGTTTGAGGAAGAACAAAGAGGCCGAGGCAAAGAGCAA------------TTGGTCAGGAGCCGATCATGG---AAGGATGGAGGTGGT---GCACCTCTCAATTTC------CCAAAAGTAGCACATCGTATCCAGGgtgggaaggggtaaggatgccctactttgctcggggggtcaagggttagg Alignment from Exonerate_coding2genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG gtaagttagggcagggttgcgtcctattctcacacgaccctcggccacagCATTGAGGAAATTTCAGCTGACTCAAAGGATGAGTTTGAGGAAGAACAAAGAGGCCGAGGCAAAGAGCAA------------TTGGTCAGGAGCCGATCATGG---AAGGATGGAGGTGGT---GCACCTCTCAATTTC------CCAAAAGTAGCACATCGTATCCAGGgtgggaaggggtaaggatgccctactttgctcggggggtcaagggttagg Alignment from GeneWise CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG gtaagttagggcagggttgcgtcctattctcacacgaccctcggccacagCATTGAGGAAATTTCAGCTGACTCAAAGGATGAGTTTGAGGAAGAACAAAGAGGCCGAGGCAAAGAGCAA------------TTGGTCAGGAGCCGATCATGG---AAGGATGGAGGTGGT---GCACCTCTCAATTTC------CCAAAAGTAGCACATCGTATCCAGGgtgggaaggggtaaggatgccctactttgctcggggggtcaagggttagg #### Rrp12_ID8298_25 --> 2 - 0 Original Alignment ggCTGATGGGGACCAGCACAGTGGAGCAGCTCCTGGAGAACGTGTGCCTGCTGCTGGCCTCTCGAACCCGTGATGTGGTCAAGTCCGCGCTAGGCTTCATCAAGGTTGCTGTGGTGGTCATGGACGTGGTGCACCTTGCTAAGCATGTGCAGCTAGTG actaggtactgggtcaatatgtcatatttcgcatctacactattccctaggcTTGATGGGGACCAGCACAGCAGAACAACTCTTAGGGAATGTGTGCTTCCTGTTAGCCTCTAGAACATGGGATGTAGTAAAAGCCGCACTAGGCTTCATTAAGGTTACTGTGGTGGTCATGGATGTAGTTCATCTTGCTAAGCACGTACACCTAGTGgtgactccttccagtgtacatgggggggaacaacactagtggacgccaac Alignment from CESAR ggCTGATGGGGACCAGCACAGTGGAGCAGCTCCTGGAGAACGTGTGCCTGCTGCTGGCCTCTCGAACCCGTGATGTGGTCAAGTCCGCGCTAGGCTTCATCAAGGTTGCTGTGGTGGTCATGGACGTGGTGCACCTTGCTAAGCATGTGCAGCTAGTG actaggtactgggtcaatatgtcatatttcgcatctacactattccctaggcTTGATGGGGACCAGCACAGCAGAACAACTCTTAGGGAATGTGTGCTTCCTGTTAGCCTCTAGAACATGGGATGTAGTAAAAGCCGCACTAGGCTTCATTAAGGTTACTGTGGTGGTCATGGATGTAGTTCATCTTGCTAAGCACGTACACCTAGTGgtgactccttccagtgtacatgggggggaacaacactagtggacgccaac Alignment from Spaln_aa2Genome GGCTGATGGGGACCAGCACAGTGGAGCAGCTCCTGGAGAACGTGTGCCTGCTGCTGGCCTCTCGAACCCGTGATGTGGTCAAGTCCGCGCTAGGCTTCATCAAGGTTGCTGTGGTGGTCATGGACGTGGTGCACCTTGCTAAGCATGTGCAGCTAGTG actaggtactgggtcaatatgtcatatttcgcatctacactattccctagGCTTGATGGGGACCAGCACAGCAGAACAACTCTTAGGGAATGTGTGCTTCCTGTTAGCCTCTAGAACATGGGATGTAGTAAAAGCCGCACTAGGCTTCATTAAGGTTACTGTGGTGGTCATGGATGTAGTTCATCTTGCTAAGCACGTACACCTAGTGgtgactccttccagtgtacatgggggggaacaacactagtggacgccaac Alignment from Spaln_nt2Genome GGCTGATGGGGACCAGCACAGTGGAGCAGCTCCTGGAGAACGTGTGCCTGCTGCTGGCCTCTCGAACCCGTGATGTGGTCAAGTCCGCGCTAGGCTTCATCAAGGTTGCTGTGGTGGTCATGGACGTGGTGCACCTTGCTAAGCATGTGCAGCTAGTG actaggtactgggtcaatatgtcatatttcgcatctacactattccctagGCTTGATGGGGACCAGCACAGCAGAACAACTCTTAGGGAATGTGTGCTTCCTGTTAGCCTCTAGAACATGGGATGTAGTAAAAGCCGCACTAGGCTTCATTAAGGTTACTGTGGTGGTCATGGATGTAGTTCATCTTGCTAAGCACGTACACCTAGTGgtgactccttccagtgtacatgggggggaacaacactagtggacgccaac Alignment from Pairagon GGCTGATGGGGACCAGCACAGTGGAGCAGCTCCTGGAGAACGTGTGCCTGCTGCTGGCCTCTCGAACCCGTGATGTGGTCAAGTCCGCGCTAGGCTTCATCAAGGTTGCTGTGGTGGTCATGGACGTGGTGCACCTTGCTAAGCATGTGCAGCTAGTG actaggtactgggtcaatatgtcatatttcgcatctacactattccctagGCTTGATGGGGACCAGCACAGCAGAACAACTCTTAGGGAATGTGTGCTTCCTGTTAGCCTCTAGAACATGGGATGTAGTAAAAGCCGCACTAGGCTTCATTAAGGTTACTGTGGTGGTCATGGATGTAGTTCATCTTGCTAAGCACGTACACCTAGTGgtgactccttccagtgtacatgggggggaacaacactagtggacgccaac Alignment from Exonerate_protein2genome GGCTGATGGGGACCAGCACAGTGGAGCAGCTCCTGGAGAACGTGTGCCTGCTGCTGGCCTCTCGAACCCGTGATGTGGTCAAGTCCGCGCTAGGCTTCATCAAGGTTGCTGTGGTGGTCATGGACGTGGTGCACCTTGCTAAGCATGTGCAGCTAGTG actaggtactgggtcaatatgtcatatttcgcatctacactattccctagGCTTGATGGGGACCAGCACAGCAGAACAACTCTTAGGGAATGTGTGCTTCCTGTTAGCCTCTAGAACATGGGATGTAGTAAAAGCCGCACTAGGCTTCATTAAGGTTACTGTGGTGGTCATGGATGTAGTTCATCTTGCTAAGCACGTACACCTAGTGgtgactccttccagtgtacatgggggggaacaacactagtggacgccaac Alignment from Exonerate_coding2genome GGCTGATGGGGACCAGCACAGTGGAGCAGCTCCTGGAGAACGTGTGCCTGCTGCTGGCCTCTCGAACCCGTGATGTGGTCAAGTCCGCGCTAGGCTTCATCAAGGTTGCTGTGGTGGTCATGGACGTGGTGCACCTTGCTAAGCATGTGCAGCTAGTG actaggtactgggtcaatatgtcatatttcgcatctacactattccctagGCTTGATGGGGACCAGCACAGCAGAACAACTCTTAGGGAATGTGTGCTTCCTGTTAGCCTCTAGAACATGGGATGTAGTAAAAGCCGCACTAGGCTTCATTAAGGTTACTGTGGTGGTCATGGATGTAGTTCATCTTGCTAAGCACGTACACCTAGTGgtgactccttccagtgtacatgggggggaacaacactagtggacgccaac Alignment from GeneWise GGCTGATGGGGACCAGCACAGTGGAGCAGCTCCTGGAGAACGTGTGCCTGCTGCTGGCCTCTCGAACCCGTGATGTGGTCAAGTCCGCGCTAGGCTTCATCAAGGTTGCTGTGGTGGTCATGGACGTGGTGCACCTTGCTAAGCATGTGCAGCTAGTG actaggtactgggtcaatatgtcatatttcgcatctacactattccctagGCTTGATGGGGACCAGCACAGCAGAACAACTCTTAGGGAATGTGTGCTTCCTGTTAGCCTCTAGAACATGGGATGTAGTAAAAGCCGCACTAGGCTTCATTAAGGTTACTGTGGTGGTCATGGATGTAGTTCATCTTGCTAAGCACGTACACCTAGTGgtgactccttccagtgtacatgggggggaacaacactagtggacgccaac #### Rrp12_ID8301_22 --> 0 - 0 Original Alignment CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG agaaagcacagccaggggcactcagtgtttttccttcctgtgccctgcagCCC---CTGAAATGTCTCATACATATTGTGAAAACACTGTTAGCTGAACATGAAGAATTCACAGCTGCATTGATCCCTGAGgtgagttagcaggtcagactctggactcctgaagccagacctaaggaggg Alignment from CESAR CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG agaaagcacagccaggggcactcagtgtttttccttcctgtgccctgcagCCC---CTGAAATGTCTCATACATATTGTGAAAACACTGTTAGCTGAACATGAAGAATTCACAGCTGCATTGATCCCTGAGgtgagttagcaggtcagactctggactcctgaagccagacctaaggaggg Alignment from Spaln_aa2Genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG agaaagcacagccaggggcactcagtgtttttccttcctgtgccctgcagCCC---CTGAAATGTCTCATACATATTGTGAAAACACTGTTAGCTGAACATGAAGAATTCACAGCTGCATTGATCCCTGAGgtgagttagcaggtcagactctggactcctgaagccagacctaaggaggg Alignment from Spaln_nt2Genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG agaaagcacagccaggggcactcagtgtttttccttcctgtgccctgcagCCCC---TGAAATGTCTCATACATATTGTGAAAACACTGTTAGCTGAACATGAAGAATTCACAGCTGCATTGATCCCTGAGgtgagttagcaggtcagactctggactcctgaagccagacctaaggaggg Alignment from Pairagon CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG agaaagcacagccaggggcactcagtgtttttccttcctgtgccctgcagCCCC---TGAAATGTCTCATACATATTGTGAAAACACTGTTAGCTGAACATGAAGAATTCACAGCTGCATTGATCCCTGAGgtgagttagcaggtcagactctggactcctgaagccagacctaaggaggg Alignment from Exonerate_protein2genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG agaaagcacagccaggggcactcagtgtttttccttcctgtgccctgcagCCC---CTGAAATGTCTCATACATATTGTGAAAACACTGTTAGCTGAACATGAAGAATTCACAGCTGCATTGATCCCTGAGgtgagttagcaggtcagactctggactcctgaagccagacctaaggaggg Alignment from Exonerate_coding2genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG agaaagcacagccaggggcactcagtgtttttccttcctgtgccctgcagCCC---CTGAAATGTCTCATACATATTGTGAAAACACTGTTAGCTGAACATGAAGAATTCACAGCTGCATTGATCCCTGAGgtgagttagcaggtcagactctggactcctgaagccagacctaaggaggg Alignment from GeneWise CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG agaaagcacagccaggggcactcagtgtttttccttcctgtgccctgcagCCC---CTGAAATGTCTCATACATATTGTGAAAACACTGTTAGCTGAACATGAAGAATTCACAGCTGCATTGATCCCTGAGgtgagttagcaggtcagactctggactcctgaagccagacctaaggaggg #### Rrp12_ID8305_18 --> 2 - 0 Original Alignment agGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGG---CAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG gatttgctatatgactttcctacctgactgagtgacctggattcctctagagGCAGACCGGGCTGATGTGAGTTGTTTTGCTACAAACTCTCTGCCAATCCTCTTTAACTTGTATGGGCAACAACCAGTTGCAGCTGGGGAAACAGCC---CCCCATCGTACA---GTGGAG---ATTAAGAGTTACCTCAGTGTAACTGAATCACAGgtggggagtgtgtactgtggagaacttttaagaatatatcctggtagctc Alignment from CESAR agGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGG---CAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG gatttgctatatgactttcctacctgactgagtgacctggattcctctagagGCAGACCGGGCTGATGTGAGTTGTTTTGCTACAAACTCTCTGCCAATCCTCTTTAACTTGTATGGGCAACAACCAGTTGCAGCTGGGGAA---ACAGCCCCCCATCGTACAGTG---GAG---ATTAAGAGTTACCTCAGTGTAACTGAATCACAGgtggggagtgtgtactgtggagaacttttaagaatatatcctggtagctc Alignment from Spaln_aa2Genome AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG gatttgctatatgactttcctacctgactgagtgacctggattcctctagAGGCAGACCGGGCTGATGTGAGTTGTTTTGCTACAAACTCTCTGCCAATCCTCTTTAACTTGTATGGGCAACAACCAGTTGCAGCTGGGGAAACAGCCCCCCATCGTACAGTG------GAGATTAAGAGTTACCTCAGTGTAACTGAATCACAGgtggggagtgtgtactgtggagaacttttaagaatatatcctggtagctc Alignment from Spaln_nt2Genome AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGC---CTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG gatttgctatatgactttcctacctgactgagtgacctggattcctctagAGGCAGACCGGGCTGATGTGAGTTGTTTTGCTACAAACTCTCTGCCAATCCTCTTTAACTTGTATGGGCAACAACCAGTTGCAGCTGG---GGAAACAGCCCCCCATCGTACAGTGGAG------ATTAAGAGTTACCTCAGTGTAACTGAATCACAGgtggggagtgtgtactgtggagaacttttaagaatatatcctggtagctc Alignment from Pairagon AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGG---CAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAAC---------------------CATCAAAACTTACCTCACCATAACTGAGGCTCAG gatttgctatatgactttcctacctgactgagtgacctggattcctctagAGGCAGACCGGGCTGATGTGAGTTGTTTTGCTACAAACTCTCTGCCAATCCTCTTTAACTTGTATGGGCAACAACCAGTTGCAGCTGG------------------------------GGAAACAGCCCCCCATCGTACAGTGGAGATTAAGAGTTACCTCAGTGTAACTGAATCACAGgtggggagtgtgtactgtggagaacttttaagaatatatcctggtagctc Alignment from Exonerate_protein2genome AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG gatttgctatatgactttcctacctgactgagtgacctggattcctctagAGGCAGACCGGGCTGATGTGAGTTGTTTTGCTACAAACTCTCTGCCAATCCTCTTTAACTTGTATGGGCAACAACCAGTTGCAGCTGGGGAAACAGCCCCCCATCGTACAGTG------GAGATTAAGAGTTACCTCAGTGTAACTGAATCACAGgtggggagtgtgtactgtggagaacttttaagaatatatcctggtagctc Alignment from Exonerate_coding2genome AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG gatttgctatatgactttcctacctgactgagtgacctggattcctctagAGGCAGACCGGGCTGATGTGAGTTGTTTTGCTACAAACTCTCTGCCAATCCTCTTTAACTTGTATGGGCAACAACCAGTTGCAGCTGGGGAAACAGCCCCCCATCGTACAGTG------GAGATTAAGAGTTACCTCAGTGTAACTGAATCACAGgtggggagtgtgtactgtggagaacttttaagaatatatcctggtagctc Alignment from GeneWise AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAG---CCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG gatttgctatatgactttcctacctgactgagtgacctggattcctctagAGGCAGACCGGGCTGATGTGAGTTGTTTTGCTACAAACTCTCTGCCAATCCTCTTTAACTTGTATGGGCAACAACCAGTTGCAGCTGGGGAA---ACAGCCCCCCATCGTACAGTG------GAGATTAAGAGTTACCTCAGTGTAACTGAATCACAGgtggggagtgtgtactgtggagaacttttaagaatatatcctggtagctc #### Rrp12_ID8311_12 --> 0 - 2 Original Alignment GAGATCCTGAAGGAGTGTGTGGCTCCACACATTGCTGACATTGGCTCTGTGACCTCTTCAGCCTCAGGTCCTCCCCAGTACATCACTAAGATGTTCag gaggctttgattagagagtatgccctaagaaatgtctgctctgtctaaagGAGATTCTCAAAGACTGTGTGGGTCCACACGTTGCTGAT---AGCTCTGTCACGACTTCAGCATCTAGTCCACCCCATTACATCACTGAGATGTTTaggtaatggtatcaaatttcttagctctagctgtgtgtattcattaggacat Alignment from CESAR GAGATCCTGAAGGAGTGTGTGGCTCCACACATTGCTGACATTGGCTCTGTGACCTCTTCAGCCTCAGGTCCTCCCCAGTACATCACTAAGATGTTCag gaggctttgattagagagtatgccctaagaaatgtctgctctgtctaaagGAGATTCTCAAAGACTGTGTGGGTCCACACGTTGCTGAT---AGCTCTGTCACGACTTCAGCATCTAGTCCACCCCATTACATCACTGAGATGTTTaggtaatggtatcaaatttcttagctctagctgtgtgtattcattaggacat Alignment from Spaln_aa2Genome GAGATCCTGAAGGAGTGTGTGGCTCCACACATTGCTGACATTGGCTCTGTGACCTCTTCAGCCTCAGGTCCTCCCCAGTACATCACTAAGATGTTCAG gaggctttgattagagagtatgccctaagaaatgtctgctctgtctaaagGAGATTCTCAAAGACTGTGTGGGTCCACACGTTGCTGAT---AGCTCTGTCACGACTTCAGCATCTAGTCCACCCCATTACATCACTGAGATGTTTAGgtaatggtatcaaatttcttagctctagctgtgtgtattcattaggacat Alignment from Spaln_nt2Genome GAGATCCTGAAGGAGTGTGTGGCTCCACACATTGCTGACATTGGCTCTGTGACCTCTTCAGCCTCAGGTCCTCCCCAGTACATCACTAAGATGTTCAG gaggctttgattagagagtatgccctaagaaatgtctgctctgtctaaagGAGATTCTCAAAGACTGTGTGGGTCCACACGTTGCTGATA---GCTCTGTCACGACTTCAGCATCTAGTCCACCCCATTACATCACTGAGATGTTTAGgtaatggtatcaaatttcttagctctagctgtgtgtattcattaggacat Alignment from Pairagon GAGATCCTGAAGGAGTGTGTGGCTCCACACATTGCTGACATTGGCTCTGTGACCTCTTCAGCCTCAGGTCCTCCCCAGTACATCACTAAGATGTTCAG gaggctttgattagagagtatgccctaagaaatgtctgctctgtctaaagGAGATTCTCAAAGACTGTGTGGGTCCACACGTTGCTGATA---GCTCTGTCACGACTTCAGCATCTAGTCCACCCCATTACATCACTGAGATGTTTAGgtaatggtatcaaatttcttagctctagctgtgtgtattcattaggacat Alignment from Exonerate_protein2genome GAGATCCTGAAGGAGTGTGTGGCTCCACACATTGCTGACATTGGCTCTGTGACCTCTTCAGCCTCAGGTCCTCCCCAGTACATCACTAAGATGTTCAG gaggctttgattagagagtatgccctaagaaatgtctgctctgtctaaagGAGATTCTCAAAGACTGTGTGGGTCCACACGTTGCTGAT---AGCTCTGTCACGACTTCAGCATCTAGTCCACCCCATTACATCACTGAGATGTTTAGgtaatggtatcaaatttcttagctctagctgtgtgtattcattaggacat Alignment from Exonerate_coding2genome gaggctttgattagagagtatgccctaagaaatgtctgctctgtctaaaggagattctcaaagactgtgtgggtccacacgttgctgatagctctgtcacgacttcagcatctagtccaccccattacatcactgagatgtttaggtaatggtatcaaatttcttagctctagctgtgtgtattcattaggacat Alignment from GeneWise GAGATCCTGAAGGAGTGTGTGGCTCCACACATTGCTGACATTGGCTCTGTGACCTCTTCAGCCTCAGGTCCTCCCCAGTACATCACTAAGATGTTCAG gaggctttgattagagagtatgccctaagaaatgtctgctctgtctaaagGAGATTCTCAAAGACTGTGTGGGTCCACACGTTGCTGAT---AGCTCTGTCACGACTTCAGCATCTAGTCCACCCCATTACATCACTGAGATGTTTAGgtaatggtatcaaatttcttagctctagctgtgtgtattcattaggacat #### Rrp12_ID8313_10 --> 0 - 2 Original Alignment GCACTATATGACTACGTTCCCAGTGAGAATGATTTACAGCCCCTGCTGGCCTGGCTTAAGGTCATGGAGAAAGCCCACATCAACCTGGTCag ccataaatgtgagatcctgcttactatacacccagtaccctctttcccagGCATTGTATGACTATGCTCCCAGTGAAAATGATCTGCAGTCCTTATTAGCCTGGATTAAGGTCATGGAGAGAGCCCATGTTAATTTAGAAaggtgagccttgtagctcatgcgcactactgtaggatccccctaaaagccat Alignment from CESAR GCACTATATGACTACGTTCCCAGTGAGAATGATTTACAGCCCCTGCTGGCCTGGCTTAAGGTCATGGAGAAAGCCCACATCAACCTGGTCag ccataaatgtgagatcctgcttactatacacccagtaccctctttcccagGCATTGTATGACTATGCTCCCAGTGAAAATGATCTGCAGTCCTTATTAGCCTGGATTAAGGTCATGGAGAGAGCCCATGTTAATTTAGAAaggtgagccttgtagctcatgcgcactactgtaggatccccctaaaagccat Alignment from Spaln_aa2Genome GCACTATATGACTACGTTCCCAGTGAGAATGATTTACAGCCCCTGCTGGCCTGGCTTAAGGTCATGGAGAAAGCCCACATCAACCTGGTCAG ccataaatgtgagatcctgcttactatacacccagtaccctctttcccagGCATTGTATGACTATGCTCCCAGTGAAAATGATCTGCAGTCCTTATTAGCCTGGATTAAGGTCATGGAGAGAGCCCATGTTAATTTAGAAAGgtgagccttgtagctcatgcgcactactgtaggatccccctaaaagccat Alignment from Spaln_nt2Genome GCACTATATGACTACGTTCCCAGTGAGAATGATTTACAGCCCCTGCTGGCCTGGCTTAAGGTCATGGAGAAAGCCCACATCAACCTGGTCAG ccataaatgtgagatcctgcttactatacacccagtaccctctttcccagGCATTGTATGACTATGCTCCCAGTGAAAATGATCTGCAGTCCTTATTAGCCTGGATTAAGGTCATGGAGAGAGCCCATGTTAATTTAGAAAGgtgagccttgtagctcatgcgcactactgtaggatccccctaaaagccat Alignment from Pairagon GCACTATATGACTACGTTCCCAGTGAGAATGATTTACAGCCCCTGCTGGCCTGGCTTAAGGTCATGGAGAAAGCCCAC ccataaatgtgagatcctgcttactatacacccagtaccctctttcccagGCATTGTATGACTATGCTCCCAGTGAAAATGATCTGCAGTCCTTATTAGCCTGGATTAAGGTCATGGAGAGAGCCCATgttaatttagaaaggtgagccttgtagctcatgcgcactactgtaggatccccctaaaagccat Alignment from Exonerate_protein2genome GCACTATATGACTACGTTCCCAGTGAGAATGATTTACAGCCCCTGCTGGCCTGGCTTAAGGTCATGGAGAAAGCCCACATCAACCTGGTCAG ccataaatgtgagatcctgcttactatacacccagtaccctctttcccagGCATTGTATGACTATGCTCCCAGTGAAAATGATCTGCAGTCCTTATTAGCCTGGATTAAGGTCATGGAGAGAGCCCATGTTAATTTAGAAAGgtgagccttgtagctcatgcgcactactgtaggatccccctaaaagccat Alignment from Exonerate_coding2genome ccataaatgtgagatcctgcttactatacacccagtaccctctttcccaggcattgtatgactatgctcccagtgaaaatgatctgcagtccttattagcctggattaaggtcatggagagagcccatgttaatttagaaaggtgagccttgtagctcatgcgcactactgtaggatccccctaaaagccat Alignment from GeneWise GCACTATATGACTACGTTCCCAGTGAGAATGATTTACAGCCCCTGCTGGCCTGGCTTAAGGTCATGGAGAAAGCCCACATCAACCTGGTCAG ccataaatgtgagatcctgcttactatacacccagtaccctctttcccagGCATTGTATGACTATGCTCCCAGTGAAAATGATCTGCAGTCCTTATTAGCCTGGATTAAGGTCATGGAGAGAGCCCATGTTAATTTAGAAAGgtgagccttgtagctcatgcgcactactgtaggatccccctaaaagccat #### Rrp12_ID8317_6 --> 0 - 0 Original Alignment GTCCTCTCCTGCCTGGCCATCCTCCTTCGGAAGCAAGACCTGGAGGCCTGGGGCTATCCCATCACCCTTCAGGTGTACCATGGACTGCTGAGCTTCACCGTGCATGCCAAGCCGAAG aacccttactgtatctaatgacacactggttctgtgtgtgccttttgcagGTCCTCTCCTGCCTGGCCATCTTCCTTCGACAACAAGACCTTGAGGCCTGGGGCTATCCAATTACCCTTCAGGTGTACCACGGACTACTGAGCTTCACAGTACATGCCAAGCCAAAGgtgagcatcaagatgattcattctgaacacaccatctaagctggcaaaag Alignment from CESAR GTCCTCTCCTGCCTGGCCATCCTCCTTCGGAAGCAAGACCTGGAGGCCTGGGGCTATCCCATCACCCTTCAGGTGTACCATGGACTGCTGAGCTTCACCGTGCATGCCAAGCCGAAG aacccttactgtatctaatgacacactggttctgtgtgtgccttttgcagGTCCTCTCCTGCCTGGCCATCTTCCTTCGACAACAAGACCTTGAGGCCTGGGGCTATCCAATTACCCTTCAGGTGTACCACGGACTACTGAGCTTCACAGTACATGCCAAGCCAAAGgtgagcatcaagatgattcattctgaacacaccatctaagctggcaaaag Alignment from Spaln_aa2Genome GTCCTCTCCTGCCTGGCCATCCTCCTTCGGAAGCAAGACCTGGAGGCCTGGGGCTATCCCATCACCCTTCAGGTGTACCATGGACTGCTGAGCTTCACCGTGCATGCCAAGCCGAAG aacccttactgtatctaatgacacactggttctgtgtgtgccttttgcagGTCCTCTCCTGCCTGGCCATCTTCCTTCGACAACAAGACCTTGAGGCCTGGGGCTATCCAATTACCCTTCAGGTGTACCACGGACTACTGAGCTTCACAGTACATGCCAAGCCAAAGgtgagcatcaagatgattcattctgaacacaccatctaagctggcaaaag Alignment from Spaln_nt2Genome GTCCTCTCCTGCCTGGCCATCCTCCTTCGGAAGCAAGACCTGGAGGCCTGGGGCTATCCCATCACCCTTCAGGTGTACCATGGACTGCTGAGCTTCACCGTGCATGCCAAGCCGAAG aacccttactgtatctaatgacacactggttctgtgtgtgccttttgcagGTCCTCTCCTGCCTGGCCATCTTCCTTCGACAACAAGACCTTGAGGCCTGGGGCTATCCAATTACCCTTCAGGTGTACCACGGACTACTGAGCTTCACAGTACATGCCAAGCCAAAGgtgagcatcaagatgattcattctgaacacaccatctaagctggcaaaag Alignment from Pairagon GTCCTCTCCTGCCTGGCCATCCTCCTTCGGAAGCAAGACCTGGAGGCCTGGGGCTATCCCATCACCCTTCAGGTGTACCATGGACTGCTGAGCTTCACCGTGCATGCCAAGCCGAAG aacccttactgtatctaatgacacactggttctgtgtgtgccttttgcagGTCCTCTCCTGCCTGGCCATCTTCCTTCGACAACAAGACCTTGAGGCCTGGGGCTATCCAATTACCCTTCAGGTGTACCACGGACTACTGAGCTTCACAGTACATGCCAAGCCAAAGgtgagcatcaagatgattcattctgaacacaccatctaagctggcaaaag Alignment from Exonerate_protein2genome aacccttactgtatctaatgacacactggttctgtgtgtgccttttgcaggtcctctcctgcctggccatcttccttcgacaacaagaccttgaggcctggggctatccaattacccttcaggtgtaccacggactactgagcttcacagtacatgccaagccaaaggtgagcatcaagatgattcattctgaacacaccatctaagctggcaaaag Alignment from Exonerate_coding2genome aacccttactgtatctaatgacacactggttctgtgtgtgccttttgcaggtcctctcctgcctggccatcttccttcgacaacaagaccttgaggcctggggctatccaattacccttcaggtgtaccacggactactgagcttcacagtacatgccaagccaaaggtgagcatcaagatgattcattctgaacacaccatctaagctggcaaaag Alignment from GeneWise GTCCTCTCCTGCCTGGCCATCCTCCTTCGGAAGCAAGACCTGGAGGCCTGGGGCTATCCCATCACCCTTCAGGTGTACCATGGACTGCTGAGCTTCACCGTGCATGCCAAGCCGAAG aacccttactgtatctaatgacacactggttctgtgtgtgccttttgcagGTCCTCTCCTGCCTGGCCATCTTCCTTCGACAACAAGACCTTGAGGCCTGGGGCTATCCAATTACCCTTCAGGTGTACCACGGACTACTGAGCTTCACAGTACATGCCAAGCCAAAGgtgagcatcaagatgattcattctgaacacaccatctaagctggcaaaag #### Sart1_ID964_11 --> 1 - 1 Original Alignment gCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAG---GCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACT---------CGAGTAGAGAACATGGACATCAGTGATGAAg agatggagaaattcaaagagcatagtttactgtctgctttttgtctttagaCTTCGGGGACGGGGAAGGCACCAAGTTTCC------AAGGAGGAGACAACACTTGAGGATGAGGGGAAGGATCTTGTTGCCAAACCACCTCCATCAGATGACACTCGAGTCATTCAAGTC------ATGGACATCAGTGATGAAggtgagttattgcagaatagggatccagggtgaacctgcaggcagggctaa Alignment from CESAR gCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTA---GAGAACATGGACATCAGTGATGAAg agatggagaaattcaaagagcatagtttactgtctgctttttgtctttagaCTTCGGGGACGGGGAAGGCACCAAGTTTCCAAG---GAGGAGACAACACTTGAGGATGAGGGGAAGGATCTTGTTGCCAAACCACCTCCATCAGATGACACTCGAGTCATTCAAGTCATGGACATCAGTGATGAAggtgagttattgcagaatagggatccagggtgaacctgcaggcagggctaa Alignment from Spaln_aa2Genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTA---GAGAACATGGACATCAGTGATGAAG agatggagaaattcaaagagcatagtttactgtctgctttttgtctttagACTTCGGGGACGGGGAAGGCACCAAGTTTCCAAG---GAGGAGACAACACTTGAGGATGAGGGGAAGGATCTTGTTGCCAAACCACCTCCATCAGATGACACTCGAGTCATTCAAGTCATGGACATCAGTGATGAAGgtgagttattgcagaatagggatccagggtgaacctgcaggcagggctaa Alignment from Spaln_nt2Genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGT-AGAGAA--CATGGACATCAGTGATGAAG agatggagaaattcaaagagcatagtttactgtctgctttttgtctttagACTTCGGGGACGGGGAAGGCACCAAGTTTCCAA---GGAGGAGACAACACTTGAGGATGAGGGGAAGGATCTTGTTGCCAAACCACCTCCATCAGATGACACTCGAGTCATTCAAGTCATGGACATCAGTGATGAAGgtgagttattgcagaatagggatccagggtgaacctgcaggcagggctaa Alignment from Pairagon GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGT------AGAGAACATGGACATCAGTGATGAAG agatggagaaattcaaagagcatagtttactgtctgctttttgtctttagACTTCGGGGACGGGGAAGGCACCAAGTTTCCAA---GGAGGAGACAACACTTGAGGATGAGGGGAAGGATCTTGTTGCCAAACCACCTCCATCAGATGACACTCGAGTCATTCAAG---TCATGGACATCAGTGATGAAGgtgagttattgcagaatagggatccagggtgaacctgcaggcagggctaa Alignment from Exonerate_protein2genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTA---GAGAACATGGACATCAGTGATGAAG agatggagaaattcaaagagcatagtttactgtctgctttttgtctttagACTTCGGGGACGGGGAAGGCACCAAGTTTCCAAG---GAGGAGACAACACTTGAGGATGAGGGGAAGGATCTTGTTGCCAAACCACCTCCATCAGATGACACTCGAGTCATTCAAGTCATGGACATCAGTGATGAAGgtgagttattgcagaatagggatccagggtgaacctgcaggcagggctaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTA---GAGAACATGGACATCAGTGATGAAG agatggagaaattcaaagagcatagtttactgtctgctttttgtctttagACTTCGGGGACGGGGAAGGCACCAAGTTTCCAAG---GAGGAGACAACACTTGAGGATGAGGGGAAGGATCTTGTTGCCAAACCACCTCCATCAGATGACACTCGAGTCATTCAAGTCATGGACATCAGTGATGAAGgtgagttattgcagaatagggatccagggtgaacctgcaggcagggctaa #### Sart1_ID968_7 --> 0 - 1 Original Alignment GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAg acagaaccagcttttgtcctcatttctattttaaaactttgtgttttaagGACCTGTACAGTGCCCGAGACCTGCAGGGCCTCACTGTGGAACGTGCTATTGATTCTTTTCAAGAGGGGGAGACTGTGGTTGTCACCCTCAAAGACAAAggtaggtggtatctgggagtggcttgattgggtagcctgtggctgaagatt Alignment from CESAR GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAg acagaaccagcttttgtcctcatttctattttaaaactttgtgttttaagGACCTGTACAGTGCCCGAGACCTGCAGGGCCTCACTGTGGAACGTGCTATTGATTCTTTTCAAGAGGGGGAGACTGTGGTTGTCACCCTCAAAGACAAAggtaggtggtatctgggagtggcttgattgggtagcctgtggctgaagatt Alignment from Spaln_aa2Genome GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG acagaaccagcttttgtcctcatttctattttaaaactttgtgttttaagGACCTGTACAGTGCCCGAGACCTGCAGGGCCTCACTGTGGAACGTGCTATTGATTCTTTTCAAGAGGGGGAGACTGTGGTTGTCACCCTCAAAGACAAAGgtaggtggtatctgggagtggcttgattgggtagcctgtggctgaagatt Alignment from Spaln_nt2Genome GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG acagaaccagcttttgtcctcatttctattttaaaactttgtgttttaagGACCTGTACAGTGCCCGAGACCTGCAGGGCCTCACTGTGGAACGTGCTATTGATTCTTTTCAAGAGGGGGAGACTGTGGTTGTCACCCTCAAAGACAAAGgtaggtggtatctgggagtggcttgattgggtagcctgtggctgaagatt Alignment from Pairagon GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG acagaaccagcttttgtcctcatttctattttaaaactttgtgttttaagGACCTGTACAGTGCCCGAGACCTGCAGGGCCTCACTGTGGAACGTGCTATTGATTCTTTTCAAGAGGGGGAGACTGTGGTTGTCACCCTCAAAGACAAAGgtaggtggtatctgggagtggcttgattgggtagcctgtggctgaagatt Alignment from Exonerate_protein2genome GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG acagaaccagcttttgtcctcatttctattttaaaactttgtgttttaagGACCTGTACAGTGCCCGAGACCTGCAGGGCCTCACTGTGGAACGTGCTATTGATTCTTTTCAAGAGGGGGAGACTGTGGTTGTCACCCTCAAAGACAAAGgtaggtggtatctgggagtggcttgattgggtagcctgtggctgaagatt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG acagaaccagcttttgtcctcatttctattttaaaactttgtgttttaagGACCTGTACAGTGCCCGAGACCTGCAGGGCCTCACTGTGGAACGTGCTATTGATTCTTTTCAAGAGGGGGAGACTGTGGTTGTCACCCTCAAAGACAAAGgtaggtggtatctgggagtggcttgattgggtagcctgtggctgaagatt #### Sart1_ID969_6 --> 0 - 0 Original Alignment GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG agctatctgttaagtcccaaaccttttctctatttctgttccccaaatagGCTAAGCTGTTGGAGGAAATGGGTCAAAAGTTTGGTGTGAGCACATTAGTTGAGGAAGAGTTTGAGCAGAAGCGACAGgtgaggatccaattgcagcaatgacaattactatgttgagtaccacaatt Alignment from CESAR GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG agctatctgttaagtcccaaaccttttctctatttctgttccccaaatagGCTAAGCTGTTGGAGGAAATGGGTCAAAAGTTTGGTGTGAGCACATTAGTTGAGGAAGAGTTTGAGCAGAAGCGACAGgtgaggatccaattgcagcaatgacaattactatgttgagtaccacaatt Alignment from Spaln_aa2Genome GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG agctatctgttaagtcccaaaccttttctctatttctgttccccaaatagGCTAAGCTGTTGGAGGAAATGGGTCAAAAGTTTGGTGTGAGCACATTAGTTGAGGAAGAGTTTGAGCAGAAGCGACAGgtgaggatccaattgcagcaatgacaattactatgttgagtaccacaatt Alignment from Spaln_nt2Genome GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG agctatctgttaagtcccaaaccttttctctatttctgttccccaaatagGCTAAGCTGTTGGAGGAAATGGGTCAAAAGTTTGGTGTGAGCACATTAGTTGAGGAAGAGTTTGAGCAGAAGCGACAGgtgaggatccaattgcagcaatgacaattactatgttgagtaccacaatt Alignment from Pairagon -------------------------------------------------GGCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG AGCTATCTGTTAAGTCCCAAACCTTTTCTCTATTTCTGTTCCCCAAATAGGCTAAGCTGTTGGAGGAAATGGGTCAAAAGTTTGGTGTGAGCACATTAGTTGAGGAAGAGTTTGAGCAGAAGCGACAGgtgaggatccaattgcagcaatgacaattactatgttgagtaccacaatt Alignment from Exonerate_protein2genome GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG agctatctgttaagtcccaaaccttttctctatttctgttccccaaatagGCTAAGCTGTTGGAGGAAATGGGTCAAAAGTTTGGTGTGAGCACATTAGTTGAGGAAGAGTTTGAGCAGAAGCGACAGgtgaggatccaattgcagcaatgacaattactatgttgagtaccacaatt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG agctatctgttaagtcccaaaccttttctctatttctgttccccaaatagGCTAAGCTGTTGGAGGAAATGGGTCAAAAGTTTGGTGTGAGCACATTAGTTGAGGAAGAGTTTGAGCAGAAGCGACAGgtgaggatccaattgcagcaatgacaattactatgttgagtaccacaatt #### Sart1_ID970_5 --> 1 - 0 Original Alignment gAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG tcttcacctgcccagggttcaggaaaacttatttggttgtctgggcttagtAAAGTTAAAACTCTGGGAGAAGATGACCCCTGGCTGGACGATACAGCAGCATGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATTTGGCAAAGAAGAGGgtgtgtacacatggttattcaaaagctatctgttaagtcccaaacctttt Alignment from CESAR gAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG tcttcacctgcccagggttcaggaaaacttatttggttgtctgggcttagtAAAGTTAAAACTCTGGGAGAAGATGACCCCTGGCTGGACGATACAGCAGCATGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATTTGGCAAAGAAGAGGgtgtgtacacatggttattcaaaagctatctgttaagtcccaaacctttt Alignment from Spaln_aa2Genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG tcttcacctgcccagggttcaggaaaacttatttggttgtctgggcttagTAAAGTTAAAACTCTGGGAGAAGATGACCCCTGGCTGGACGATACAGCAGCATGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATTTGGCAAAGAAGAGGgtgtgtacacatggttattcaaaagctatctgttaagtcccaaacctttt Alignment from Spaln_nt2Genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG tcttcacctgcccagggttcaggaaaacttatttggttgtctgggcttagTAAAGTTAAAACTCTGGGAGAAGATGACCCCTGGCTGGACGATACAGCAGCATGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATTTGGCAAAGAAGAGGgtgtgtacacatggttattcaaaagctatctgttaagtcccaaacctttt Alignment from Pairagon GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG tcttcacctgcccagggttcaggaaaacttatttggttgtctgggcttagTAAAGTTAAAACTCTGGGAGAAGATGACCCCTGGCTGGACGATACAGCAGCATGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATTTGGCAAAGAAGAGGgtgtgtacacatggttattcaaaagctatctgttaagtcccaaacctttt Alignment from Exonerate_protein2genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG tcttcacctgcccagggttcaggaaaacttatttggttgtctgggcttagTAAAGTTAAAACTCTGGGAGAAGATGACCCCTGGCTGGACGATACAGCAGCATGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATTTGGCAAAGAAGAGGgtgtgtacacatggttattcaaaagctatctgttaagtcccaaacctttt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG tcttcacctgcccagggttcaggaaaacttatttggttgtctgggcttagTAAAGTTAAAACTCTGGGAGAAGATGACCCCTGGCTGGACGATACAGCAGCATGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATTTGGCAAAGAAGAGGgtgtgtacacatggttattcaaaagctatctgttaagtcccaaacctttt #### Scd2_ID8988_4 --> 0 - 2 Original Alignment AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGag acttcccctttataactgttacctccatatctgatgtttgtctctgctagAATGATGTCCATGAATGGGCACGGGAT------------------------GAAACACATGCTGACCATCACAAA---CATCGGGGCTTCTTTTACTCTCATGTGGGTTGGCTGCTTGTCCATAAACACCAAGCTGTCAAAGAAAAGGGTGGA------------ACTGCCCTGAAAGCCGCACAGCTAGTAATGTTTCAGAGGaggtgagttggtgtcaaagctggtgcaattaaacttaaagggtactagggga Alignment from CESAR AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGag acttcccctttataactgttacctccatatctgatgtttgtctctgctagAATGATGTCCATGAATGGGCACGGGAT------------------------GAAACACATGCTGACCATCACAAA---CATCGGGGCTTCTTTTACTCTCATGTGGGTTGGCTGCTTGTCCATAAACACCAAGCTGTCAAAGAAAAGGGTGGA------------ACTGCCCTGAAAGCCGCACAGCTAGTAATGTTTCAGAGGaggtgagttggtgtcaaagctggtgcaattaaacttaaagggtactagggga Alignment from Spaln_aa2Genome AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG acttcccctttataactgttacctccatatctgatgtttgtctctgctagAATGATGTCCATGAATGGGCACGGGAT------------------------GAAACACATGCTGACCATCACAAA---CATCGGGGCTTCTTTTACTCTCATGTGGGTTGGCTGCTTGTCCATAAACACCAAGCTGTCAAAGAAAAGGGTGGA------------ACTGCCCTGAAAGCCGCACAGCTAGTAATGTTTCAGAGGAGgtgagttggtgtcaaagctggtgcaattaaacttaaagggtactagggga Alignment from Spaln_nt2Genome AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG acttcccctttataactgttacctccatatctgatgtttgtctctgctagAATGATGTCCATGAATGGGCACGGGAT------------------------GAAACACATGCTGACCATCACAA---ACATCGGGGCTTCTTTTACTCTCATGTGGGTTGGCTGCTTGTCCATAAACACCAAGCTGTCAAAGAAAAGGGTGGAA------------CTGCCCTGAAAGCCGCACAGCTAGTAATGTTTCAGAGGAGgtgagttggtgtcaaagctggtgcaattaaacttaaagggtactagggga Alignment from Pairagon AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG acttcccctttataactgttacctccatatctgatgtttgtctctgctagAATGATGTCCATGAATGGGCACGGGAT------------------------GAAACACATGCTGACCATCACAA---ACATCGGGGCTTCTTTTACTCTCATGTGGGTTGGCTGCTTGTCCATAAACACCAAGCTGTCAAAGAAAAGGGTGGAA------------CTGCCCTGAAAGCCGCACAGCTAGTAATGTTTCAGAGGAGgtgagttggtgtcaaagctggtgcaattaaacttaaagggtactagggga Alignment from Exonerate_protein2genome CGCGCCCACCACAAGTTCTCA------GAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG acttcccctttataactgttacctccatatctgatgtttgtctctgctagAATGATGTCCATGAATGGGCACGGGATGAAACACATGCTGAC---CATCACAAACATCGGGGCTTCTTTTACTCTCATGTGGGTTGGCTGCTTGTCCATAAACACCAAGCTGTCAAAGAAAAGGGTGGA------------ACTGCCCTGAAAGCCGCACAGCTAGTAATGTTTCAGAGGAGgtgagttggtgtcaaagctggtgcaattaaacttaaagggtactagggga Alignment from Exonerate_coding2genome CGCGCCCACCACAAGTTCTCA------GAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG acttcccctttataactgttacctccatatctgatgtttgtctctgctagAATGATGTCCATGAATGGGCACGGGATGAAACACATGCTGAC---CATCACAAACATCGGGGCTTCTTTTACTCTCATGTGGGTTGGCTGCTTGTCCATAAACACCAAGCTGTCAAAGAAAAGGGTGGA------------ACTGCCCTGAAAGCCGCACAGCTAGTAATGTTTCAGAGGAGgtgagttggtgtcaaagctggtgcaattaaacttaaagggtactagggga Alignment from GeneWise AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG acttcccctttataactgttacctccatatctgatgtttgtctctgctagAATGATGTCCATGAATGGGCACGGGAT------------------------GAAACACATGCTGAC---CATCACAAACATCGGGGCTTCTTTTACTCTCATGTGGGTTGGCTGCTTGTCCATAAACACCAAGCTGTCAAAGAAAAGGGTGGA------------ACTGCCCTGAAAGCCGCACAGCTAGTAATGTTTCAGAGGAGgtgagttggtgtcaaagctggtgcaattaaacttaaagggtactagggga #### Scd3_ID8974_3 --> 2 - 0 Original Alignment cgTTTGTCTACTATGTGATCAGTATTGAGGGCATTGGAGCCGGAGTCCATCGCCTGTGGAGCCACAGAACGTACAAGGCACGCCTGCCCCTGCGGATCTTCCTCATCATTGCCAACACCATGGCGTTCCAG catgattcaatttttattttttattccagtttgcctcatgcccctaccagcaTCTATTCACTATGTAATAACAGTAGAGGGTATTGGGACCAGACTCCATCATCTCTGGAGCCACAGAACA------GCACACCTGCCACTGGAGATCTTCCTCATCATTGTTAACACAATGGCATTTCATgtgaggggatgatgttttgttcttatctctttgctttgtgtatgatcacc Alignment from CESAR cgTTTGTCTACTATGTGATCAGTATTGAGGGCATTGGAGCCGGAGTCCATCGCCTGTGGAGCCACAGAACGTACAAGGCACGCCTGCCCCTGCGGATCTTCCTCATCATTGCCAACACCATGGCGTTCCAG catgattcaatttttattttttattccagtttgcctcatgcccctaccagcaTCTATTCACTATGTAATAACAGTAGAGGGTATTGGGACCAGACTCCATCATCTCTGGAGCCACAGAACA------GCACACCTGCCACTGGAGATCTTCCTCATCATTGTTAACACAATGGCATTTCATgtgaggggatgatgttttgttcttatctctttgctttgtgtatgatcacc Alignment from Spaln_aa2Genome CGTTTGTCTACTATGTGATCAGTATTGAGGGCATTGGAGCCGGAGTCCATCGCCTGTGGAGCCACAGAACGTACAAGGCACGCCTGCCCCTGCGGATCTTCCTCATCATTGCCAACACCATGGCGTTCCAG catgattcaatttttattttttattccagtttgcctcatgcccctaccagCATCTATTCACTATGTAATAACAGTAGAGGGTATTGGGACCAGACTCCATCATCTCTGGAGCCACAGAACA------GCACACCTGCCACTGGAGATCTTCCTCATCATTGTTAACACAATGGCATTTCATgtgaggggatgatgttttgttcttatctctttgctttgtgtatgatcacc Alignment from Spaln_nt2Genome CGTTTGTCTACTATGTGATCAGTATTGAGGGCATTGGAGCCGGAGTCCATCGCCTGTGGAGCCACAGAACGTACAAGGCACGCCTGCCCCTGCGGATCTTCCTCATCATTGCCAACACCATGGCGTTCCAG catgattcaatttttattttttattccagtttgcctcatgcccctaccagCATCTATTCACTATGTAATAACAGTAGAGGGTATTGGGACCAGACTCCATCATCTCTGGAGCCACAGAAC------AGCACACCTGCCACTGGAGATCTTCCTCATCATTGTTAACACAATGGCATTTCATgtgaggggatgatgttttgttcttatctctttgctttgtgtatgatcacc Alignment from Pairagon CGTTTGTCTACTATGTGATCAGTATTGAGGGCATTGGAGCCGGAGTCCATCGCCTGTGGAGCCACAGAACGTACAAGGCACGCCTGCCCCTGCGGATCTTCCTCATCATTGCCAACACCATGGCGTTCCAG catgattcaatttttattttttattccagtttgcctcatgcccctaccagCATCTATTCACTATGTAATAACAGTAGAGGGTATTGGGACCAGACTCCATCATCTCTGGAGCCACAGAAC------AGCACACCTGCCACTGGAGATCTTCCTCATCATTGTTAACACAATGGCATTTCATgtgaggggatgatgttttgttcttatctctttgctttgtgtatgatcacc Alignment from Exonerate_protein2genome CGTTTGTCTACTATGTGATCAGTATTGAGGGCATTGGAGCCGGAGTCCATCGCCTGTGGAGCCACAGAACGTACAAGGCACGCCTGCCCCTGCGGATCTTCCTCATCATTGCCAACACCATGGCGTTCCAG catgattcaatttttattttttattccagtttgcctcatgcccctaccagCATCTATTCACTATGTAATAACAGTAGAGGGTATTGGGACCAGACTCCATCATCTCTGGAGCCACAGAACA------GCACACCTGCCACTGGAGATCTTCCTCATCATTGTTAACACAATGGCATTTCATgtgaggggatgatgttttgttcttatctctttgctttgtgtatgatcacc Alignment from Exonerate_coding2genome CGTTTGTCTACTATGTGATCAGTATTGAGGGCATTGGAGCCGGAGTCCATCGCCTGTGGAGCCACAGAACGTACAAGGCACGCCTGCCCCTGCGGATCTTCCTCATCATTGCCAACACCATGGCGTTCCAG catgattcaatttttattttttattccagtttgcctcatgcccctaccagCATCTATTCACTATGTAATAACAGTAGAGGGTATTGGGACCAGACTCCATCATCTCTGGAGCCACAGAACA------GCACACCTGCCACTGGAGATCTTCCTCATCATTGTTAACACAATGGCATTTCATgtgaggggatgatgttttgttcttatctctttgctttgtgtatgatcacc Alignment from GeneWise CGTTTGTCTACTATGTGATCAGTATTGAGGGCATTGGAGCCGGAGTCCATCGCCTGTGGAGCCACAGAACGTACAAGGCACGCCTGCCCCTGCGGATCTTCCTCATCATTGCCAACACCATGGCGTTCCAG catgattcaatttttattttttattccagtttgcctcatgcccctaccagCATCTATTCACTATGTAATAACAGTAGAGGGTATTGGGACCAGACTCCATCATCTCTGGAGCCACAGAACA------GCACACCTGCCACTGGAGATCTTCCTCATCATTGTTAACACAATGGCATTTCATgtgaggggatgatgttttgttcttatctctttgctttgtgtatgatcacc #### Scd3_ID8976_5 --> 1 - 1 Original Alignment gTACTACAAGCCTGGCATT---------------------------------CTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTCTAAACAGTTTTTATGTTGCCACTTTACTGAGATACGCTGTGGTGCTCAACGCCACTTGGCTGGTGAACAGTGCCGCCCACCTCTACGGGTATCGCCCCTACGATAAGAACATCGATCCCCGGCAGAATGCCCTGGTTTCCTTGGGAAGTATGg ctctctgacaacaattaatcaatctcaagtccacctttcctgccatctagaTGCTACAAGCCTGGGATTCTGTTGATGTGCTTCATTCTCTCTACATTGGTGCTGTTGATGTGTTTCATTCTGTCCACATTGGTGCCCTGGTACTGTTGGTGCAGGGCCTTCCTCACAACCTTTTATGTTACCACTTTGCTGAGGTATGCAATAGTGCTAAATGCAACTTGGCTTGTGAACAGTGCAGCACATGTGTACAGATATTGCCCTTACGGTACAAATATTGATCCATGTCATAATGCACTAATT---TTGGGATGTATGggtaagtacaaatgacagcctgcatagtgcattgagaagattcagttcttc Alignment from CESAR gTACTACAAGCCTGGCATTCTGCTGATGTGCTTCATC---------------------------------CTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTCTAAACAGTTTTTATGTTGCCACTTTACTGAGATACGCTGTGGTGCTCAACGCCACTTGGCTGGTGAACAGTGCCGCCCACCTCTACGGGTATCGCCCCTACGATAAGAACATCGATCCCCGGCAGAATGCCCTGGTTTCCTTGGGAAGTATGg ctctctgacaacaattaatcaatctcaagtccacctttcctgccatctagaTGCTACAAGCCTGGGATTCTGTTGATGTGCTTCATTCTCTCTACATTGGTGCTGTTGATGTGTTTCATTCTGTCCACATTGGTGCCCTGGTACTGTTGGTGCAGGGCCTTCCTCACAACCTTTTATGTTACCACTTTGCTGAGGTATGCAATAGTGCTAAATGCAACTTGGCTTGTGAACAGTGCAGCACATGTGTACAGATATTGCCCTTACGGTACAAATATTGATCCATGTCATAATGCACTAATT---TTGGGATGTATGggtaagtacaaatgacagcctgcatagtgcattgagaagattcagttcttc Alignment from Spaln_aa2Genome GTACTACAAGCCTGGCATTCTGCTGATGTGCTTCATC---------------------------------CTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTCTAAACAGTTTTTATGTTGCCACTTTACTGAGATACGCTGTGGTGCTCAACGCCACTTGGCTGGTGAACAGTGCCGCCCACCTCTACGGGTATCGCCCCTACGATAAGAACATCGATCCCCGGCAGAATGCCCTGGTTTCCTTGGGAAGTATGG ctctctgacaacaattaatcaatctcaagtccacctttcctgccatctagATGCTACAAGCCTGGGATTCTGTTGATGTGCTTCATTCTCTCTACATTGGTGCTGTTGATGTGTTTCATTCTGTCCACATTGGTGCCCTGGTACTGTTGGTGCAGGGCCTTCCTCACAACCTTTTATGTTACCACTTTGCTGAGGTATGCAATAGTGCTAAATGCAACTTGGCTTGTGAACAGTGCAGCACATGTGTACAGATATTGCCCTTACGGTACAAATATTGATCCATGTCATAATGCACTAATT---TTGGGATGTATGGgtaagtacaaatgacagcctgcatagtgcattgagaagattcagttcttc Alignment from Spaln_nt2Genome GTACTACAAGCCTGGCATTCTGCTGATGTG---------------------------------CTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTCTAAACAGTTTTTATGTTGCCACTTTACTGAGATACGCTGTGGTGCTCAACGCCACTTGGCTGGTGAACAGTGCCGCCCACCTCTACGGGTATCGCCCCTACGATAAGAACATCGATCCCCGGCAGAATGCCCTGGTTTCCTTGGGAAGTATGG ctctctgacaacaattaatcaatctcaagtccacctttcctgccatctagATGCTACAAGCCTGGGATTCTGTTGATGTGCTTCATTCTCTCTACATTGGTGCTGTTGATGTGTTTCATTCTGTCCACATTGGTGCCCTGGTACTGTTGGTGCAGGGCCTTCCTCACAACCTTTTATGTTACCACTTTGCTGAGGTATGCAATAGTGCTAAATGCAACTTGGCTTGTGAACAGTGCAGCACATGTGTACAGATATTGCCCTTACGGTACAAATATTGATCCATGTCATAATGCACTAATT---TTGGGATGTATGGgtaagtacaaatgacagcctgcatagtgcattgagaagattcagttcttc Alignment from Pairagon GTACTACAAGCCTGGCATTCTGCTGATGTGC---------------------------------TTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTCTAAACAGTTTTTATGTTGCCACTTTACTGAGATACGCTGTGGTGCTCAACGCCACTTGGCTGGTGAACAGTGCCGCCCACCTCTACGGGTATCGCCCCTACGATAAGAACATCGATCCCCGGCAGAATGCCCTGGTTTCCTTGGGAAGTATGG ctctctgacaacaattaatcaatctcaagtccacctttcctgccatctagATGCTACAAGCCTGGGATTCTGTTGATGTGCTTCATTCTCTCTACATTGGTGCTGTTGATGTGTTTCATTCTGTCCACATTGGTGCCCTGGTACTGTTGGTGCAGGGCCTTCCTCACAACCTTTTATGTTACCACTTTGCTGAGGTATGCAATAGTGCTAAATGCAACTTGGCTTGTGAACAGTGCAGCACATGTGTACAGATATTGCCCTTACGGTACAAATATTGATCCATGTCATAATGCACTAATT---TTGGGATGTATGGgtaagtacaaatgacagcctgcatagtgcattgagaagattcagttcttc Alignment from Exonerate_protein2genome GTACTACAAGCCTGGCATTCTGCTGATGTGCTTCATCCTGCCCACGCTG GTGCCCTGGTACTGCTGGGGCGAGACTTTTCTAAACAGTTTTTATGTTGCCACTTTACTGAGATACGCTGTGGTGCTCAACGCCACTTGGCTGGTGAACAGTGCCGCCCACCTCTACGGGTATCGCCCCTACGATAAGAACATCGATCCCCGGCAGAATGCCCTGGTTTCCTTGGGAAGTATGG ctctctgacaacaattaatcaatctcaagtccacctttcctgccatctagATGCTACAAGCCTGGGATTCTGTTGATGTGCTTCATTCTCTCTACATTGgtgctgttgatgtgtttcattctgtccacattgGTGCCCTGGTACTGTTGGTGCAGGGCCTTCCTCACAACCTTTTATGTTACCACTTTGCTGAGGTATGCAATAGTGCTAAATGCAACTTGGCTTGTGAACAGTGCAGCACATGTGTACAGATATTGCCCTTACGGTACAAATATTGATCCATGTCATAATGCACTAATT---TTGGGATGTATGGgtaagtacaaatgacagcctgcatagtgcattgagaagattcagttcttc Alignment from Exonerate_coding2genome GTACTACAAGCCTGGCATTCTGCTGATGTGCTTCATCCTGCCCACGCTG GTGCCCTGGTACTGCTGGGGCGAGACTTTTCTAAACAGTTTTTATGTTGCCACTTTACTGAGATACGCTGTGGTGCTCAACGCCACTTGGCTGGTGAACAGTGCCGCCCACCTCTACGGGTATCGCCCCTACGATAAGAACATCGATCCCCGGCAGAATGCCCTGGTTTCCTTGGGAAGTATGG ctctctgacaacaattaatcaatctcaagtccacctttcctgccatctagATGCTACAAGCCTGGGATTCTGTTGATGTGCTTCATTCTCTCTACATTGgtgctgttgatgtgtttcattctgtccacattgGTGCCCTGGTACTGTTGGTGCAGGGCCTTCCTCACAACCTTTTATGTTACCACTTTGCTGAGGTATGCAATAGTGCTAAATGCAACTTGGCTTGTGAACAGTGCAGCACATGTGTACAGATATTGCCCTTACGGTACAAATATTGATCCATGTCATAATGCACTAATT---TTGGGATGTATGGgtaagtacaaatgacagcctgcatagtgcattgagaagattcagttcttc Alignment from GeneWise GTACTACAAGCCTGGCATT---------------------------------CTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTCTAAACAGTTTTTATGTTGCCACTTTACTGAGATACGCTGTGGTGCTCAACGCCACTTGGCTGGTGAACAGTGCCGCCCACCTCTACGGGTATCGCCCCTACGATAAGAACATCGATCCCCGGCAGAATGCCCTGGTTTCCTTGGGAAGTATGG ctctctgacaacaattaatcaatctcaagtccacctttcctgccatctagATGCTACAAGCCTGGGATTCTGTTGATGTGCTTCATTCTCTCTACATTGGTGCTGTTGATGTGTTTCATTCTGTCCACATTGGTGCCCTGGTACTGTTGGTGCAGGGCCTTCCTCACAACCTTTTATGTTACCACTTTGCTGAGGTATGCAATAGTGCTAAATGCAACTTGGCTTGTGAACAGTGCAGCACATGTGTACAGATATTGCCCTTACGGTACAAATATTGATCCATGTCATAATGCACTAATT---TTGGGATGTATGGgtaagtacaaatgacagcctgcatagtgcattgagaagattcagttcttc #### Scd4_ID8997_5 --> 1 - 1 Original Alignment gTACTACAAGCTAGCTGTCACGCTCATGTTCATCATTCTGCCCACACTGGTACCCTGGTACTTGTGGGGTGAGACTTTTCAACACAGCTTATGCGTCTCGAATTTCCTGCGGTATGCTGTGCTTCTAAACTTCACTTGGCTGGTGAACAGTGCGGCCCACCTCTACGGATACCGGCCCTATGACAGGGGCATTGGTGCCCGGGAGAATCCCTTCGTTTCAATGGCATCTTTAg atgcctgagaggctttccatgatgttcttacagaggtttccttcctgcaggTACTACACACTAGCTGTCAAACTAATGTTTATCATTCTTCCCACACTTGTACCCTGGTACTTGTTGGGGGAGACTTTTCAACACAGTTTATGTGTCTCAAACTTTCTCCGGTACTCTGAGTTACTAAACTTCACTTGGCTGGTGAACAGTGCGGACCATCTGTATGGATATCGGCCCTATGAGAGGGGCATAGGTGCATGGGAGAATTCCTTTGTCTCAATGGCCTCACTGggtacctcttacatacccctaagaagtagcaaagctctatgatgtgagtat Alignment from CESAR gTACTACAAGCTAGCTGTCACGCTCATGTTCATCATTCTGCCCACACTGGTACCCTGGTACTTGTGGGGTGAGACTTTTCAACACAGCTTATGCGTCTCGAATTTCCTGCGGTATGCTGTGCTTCTAAACTTCACTTGGCTGGTGAACAGTGCGGCCCACCTCTACGGATACCGGCCCTATGACAGGGGCATTGGTGCCCGGGAGAATCCCTTCGTTTCAATGGCATCTTTAg atgcctgagaggctttccatgatgttcttacagaggtttccttcctgcaggTACTACACACTAGCTGTCAAACTAATGTTTATCATTCTTCCCACACTTGTACCCTGGTACTTGTTGGGGGAGACTTTTCAACACAGTTTATGTGTCTCAAACTTTCTCCGGTACTCTGAGTTACTAAACTTCACTTGGCTGGTGAACAGTGCGGACCATCTGTATGGATATCGGCCCTATGAGAGGGGCATAGGTGCATGGGAGAATTCCTTTGTCTCAATGGCCTCACTGggtacctcttacatacccctaagaagtagcaaagctctatgatgtgagtat Alignment from Spaln_aa2Genome GTACTACAAGCTAGCTGTCACGCTCATGTTCATCATTCTGCCCACACTGGTACCCTGGTACTTGTGGGGTGAGACTTTTCAACACAGCTTATGCGTCTCGAATTTCCTGCGGTATGCTGTGCTTCTAAACTTCACTTGGCTGGTGAACAGTGCGGCCCACCTCTACGGATACCGGCCCTATGACAGGGGCATTGGTGCCCGGGAGAATCCCTTCGTTTCAATGGCATCTTTAG atgcctgagaggctttccatgatgttcttacagaggtttccttcctgcagGTACTACACACTAGCTGTCAAACTAATGTTTATCATTCTTCCCACACTTGTACCCTGGTACTTGTTGGGGGAGACTTTTCAACACAGTTTATGTGTCTCAAACTTTCTCCGGTACTCTGAGTTACTAAACTTCACTTGGCTGGTGAACAGTGCGGACCATCTGTATGGATATCGGCCCTATGAGAGGGGCATAGGTGCATGGGAGAATTCCTTTGTCTCAATGGCCTCACTGGgtacctcttacatacccctaagaagtagcaaagctctatgatgtgagtat Alignment from Spaln_nt2Genome GTACTACAAGCTAGCTGTCACGCTCATGTTCATCATTCTGCCCACACTGGTACCCTGGTACTTGTGGGGTGAGACTTTTCAACACAGCTTATGCGTCTCGAATTTCCTGCGGTATGCTGTGCTTCTAAACTTCACTTGGCTGGTGAACAGTGCGGCCCACCTCTACGGATACCGGCCCTATGACAGGGGCATTGGTGCCCGGGAGAATCCCTTCGTTTCAATGGCATCTTTAG atgcctgagaggctttccatgatgttcttacagaggtttccttcctgcagGTACTACACACTAGCTGTCAAACTAATGTTTATCATTCTTCCCACACTTGTACCCTGGTACTTGTTGGGGGAGACTTTTCAACACAGTTTATGTGTCTCAAACTTTCTCCGGTACTCTGAGTTACTAAACTTCACTTGGCTGGTGAACAGTGCGGACCATCTGTATGGATATCGGCCCTATGAGAGGGGCATAGGTGCATGGGAGAATTCCTTTGTCTCAATGGCCTCACTGGgtacctcttacatacccctaagaagtagcaaagctctatgatgtgagtat Alignment from Pairagon GTACTACAAGCTAGCTGTCACGCTCATGTTCATCATTCTGCCCACACTGGTACCCTGGTACTTGTGGGGTGAGACTTTTCAACACAGCTTATGCGTCTCGAATTTCCTGCGGTATGCTGTGCTTCTAAACTTCACTTGGCTGGTGAACAGTGCGGCCCACCTCTACGGATACCGGCCCTATGACAGGGGCATTGGTGCCCGGGAGAATCCCTTCGTTTCAATGGCATCTTTAG atgcctgagaggctttccatgatgttcttacagaggtttccttcctgcagGTACTACACACTAGCTGTCAAACTAATGTTTATCATTCTTCCCACACTTGTACCCTGGTACTTGTTGGGGGAGACTTTTCAACACAGTTTATGTGTCTCAAACTTTCTCCGGTACTCTGAGTTACTAAACTTCACTTGGCTGGTGAACAGTGCGGACCATCTGTATGGATATCGGCCCTATGAGAGGGGCATAGGTGCATGGGAGAATTCCTTTGTCTCAATGGCCTCACTGGgtacctcttacatacccctaagaagtagcaaagctctatgatgtgagtat Alignment from Exonerate_protein2genome GTACTACAAGCTAGCTGTCACGCTCATGTTCATCATTCTGCCCACACTGGTACCCTGGTACTTGTGGGGTGAGACTTTTCAACACAGCTTATGCGTCTCGAATTTCCTGCGGTATGCTGTGCTTCTAAACTTCACTTGGCTGGTGAACAGTGCGGCCCACCTCTACGGATACCGGCCCTATGACAGGGGCATTGGTGCCCGGGAGAATCCCTTCGTTTCAATGGCATCTTTAG atgcctgagaggctttccatgatgttcttacagaggtttccttcctgcagGTACTACACACTAGCTGTCAAACTAATGTTTATCATTCTTCCCACACTTGTACCCTGGTACTTGTTGGGGGAGACTTTTCAACACAGTTTATGTGTCTCAAACTTTCTCCGGTACTCTGAGTTACTAAACTTCACTTGGCTGGTGAACAGTGCGGACCATCTGTATGGATATCGGCCCTATGAGAGGGGCATAGGTGCATGGGAGAATTCCTTTGTCTCAATGGCCTCACTGGgtacctcttacatacccctaagaagtagcaaagctctatgatgtgagtat Alignment from Exonerate_coding2genome GTACTACAAGCTAGCTGTCACGCTCATGTTCATCATTCTGCCCACACTGGTACCCTGGTACTTGTGGGGTGAGACTTTTCAACACAGCTTATGCGTCTCGAATTTCCTGCGGTATGCTGTGCTTCTAAACTTCACTTGGCTGGTGAACAGTGCGGCCCACCTCTACGGATACCGGCCCTATGACAGGGGCATTGGTGCCCGGGAGAATCCCTTCGTTTCAATGGCATCTTTAG atgcctgagaggctttccatgatgttcttacagaggtttccttcctgcagGTACTACACACTAGCTGTCAAACTAATGTTTATCATTCTTCCCACACTTGTACCCTGGTACTTGTTGGGGGAGACTTTTCAACACAGTTTATGTGTCTCAAACTTTCTCCGGTACTCTGAGTTACTAAACTTCACTTGGCTGGTGAACAGTGCGGACCATCTGTATGGATATCGGCCCTATGAGAGGGGCATAGGTGCATGGGAGAATTCCTTTGTCTCAATGGCCTCACTGGgtacctcttacatacccctaagaagtagcaaagctctatgatgtgagtat Alignment from GeneWise GTACTACAAGCTAGCTGTCACGCTCATGTTCATCATTCTGCCCACACTGGTACCCTGGTACTTGTGGGGTGAGACTTTTCAACACAGCTTATGCGTCTCGAATTTCCTGCGGTATGCTGTGCTTCTAAACTTCACTTGGCTGGTGAACAGTGCGGCCCACCTCTACGGATACCGGCCCTATGACAGGGGCATTGGTGCCCGGGAGAATCCCTTCGTTTCAATGGCATCTTTAG atgcctgagaggctttccatgatgttcttacagaggtttccttcctgcagGTACTACACACTAGCTGTCAAACTAATGTTTATCATTCTTCCCACACTTGTACCCTGGTACTTGTTGGGGGAGACTTTTCAACACAGTTTATGTGTCTCAAACTTTCTCCGGTACTCTGAGTTACTAAACTTCACTTGGCTGGTGAACAGTGCGGACCATCTGTATGGATATCGGCCCTATGAGAGGGGCATAGGTGCATGGGAGAATTCCTTTGTCTCAATGGCCTCACTGGgtacctcttacatacccctaagaagtagcaaagctctatgatgtgagtat #### Sec31b_ID9028_24 --> 0 - 0 Original Alignment AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctcctatttatacccaaattcaggatgttgcaggacccctctgtccccagAAAACTAAAAAAGAACTAGAGGAGGCAGCATGGCACCTTGAATGCCTATATGAGAAGCTTTGTGAGGGAACAgtaagtcctttgtactgtgaacccacacttatgcctaggacagttagccc Alignment from CESAR AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctcctatttatacccaaattcaggatgttgcaggacccctctgtccccagAAAACTAAAAAAGAACTAGAGGAGGCAGCATGGCACCTTGAATGCCTATATGAGAAGCTTTGTGAGGGAACAgtaagtcctttgtactgtgaacccacacttatgcctaggacagttagccc Alignment from Spaln_aa2Genome AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctcctatttatacccaaattcaggatgttgcaggacccctctgtccccagAAAACTAAAAAAGAACTAGAGGAGGCAGCATGGCACCTTGAATGCCTATATGAGAAGCTTTGTGAGGGAACAgtaagtcctttgtactgtgaacccacacttatgcctaggacagttagccc Alignment from Spaln_nt2Genome AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctcctatttatacccaaattcaggatgttgcaggacccctctgtccccagAAAACTAAAAAAGAACTAGAGGAGGCAGCATGGCACCTTGAATGCCTATATGAGAAGCTTTGTGAGGGAACAgtaagtcctttgtactgtgaacccacacttatgcctaggacagttagccc Alignment from Pairagon AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctcctatttatacccaaattcaggatgttgcaggacccctctgtccccagAAAACTAAAAAAGAACTAGAGGAGGCAGCATGGCACCTTGAATGCCTATATGAGAAGCTTTGTGAGGGAACAgtaagtcctttgtactgtgaacccacacttatgcctaggacagttagccc Alignment from Exonerate_protein2genome AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctcctatttatacccaaattcaggatgttgcaggacccctctgtccccagAAAACTAAAAAAGAACTAGAGGAGGCAGCATGGCACCTTGAATGCCTATATGAGAAGCTTTGTGAGGGAACAgtaagtcctttgtactgtgaacccacacttatgcctaggacagttagccc Alignment from Exonerate_coding2genome AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctcctatttatacccaaattcaggatgttgcaggacccctctgtccccagAAAACTAAAAAAGAACTAGAGGAGGCAGCATGGCACCTTGAATGCCTATATGAGAAGCTTTGTGAGGGAACAgtaagtcctttgtactgtgaacccacacttatgcctaggacagttagccc Alignment from GeneWise AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctcctatttatacccaaattcaggatgttgcaggacccctctgtccccagAAAACTAAAAAAGAACTAGAGGAGGCAGCATGGCACCTTGAATGCCTATATGAGAAGCTTTGTGAGGGAACAgtaagtcctttgtactgtgaacccacacttatgcctaggacagttagccc #### Sec31b_ID9039_13 --> 0 - 1 Original Alignment GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCC---TTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAg ggcttaatagatacacttcacacgtgatagtatttttctctctattctagGCCACCAAACACGCTGCAAGAGAAACTTCTGAATCCTCAGCAGCTTTCTTTGATGAGTTAATACCTGAGAACATGACCCCCTGGGTGATCCCCACAACAGAGggtatgttgtttctgcaagaggatatcactatataggcatcattggtggta Alignment from CESAR GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCA---GCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAg ggcttaatagatacacttcacacgtgatagtatttttctctctattctagGCCACCAAACACGCTGCAAGAGAAACTTCTGAATCCTCAGCAGCTTTCTTTGATGAGTTAATACCTGAGAACATGACCCCCTGGGTGATCCCCACAACAGAGggtatgttgtttctgcaagaggatatcactatataggcatcattggtggta Alignment from Spaln_aa2Genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCA---GCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG ggcttaatagatacacttcacacgtgatagtatttttctctctattctagGCCACCAAACACGCTGCAAGAGAAACTTCTGAATCCTCAGCAGCTTTCTTTGATGAGTTAATACCTGAGAACATGACCCCCTGGGTGATCCCCACAACAGAGGgtatgttgtttctgcaagaggatatcactatataggcatcattggtggta Alignment from Spaln_nt2Genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCC---TTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG ggcttaatagatacacttcacacgtgatagtatttttctctctattctagGCCACCAAACACGCTGCAAGAGAAACTTCTGAATCCTCAGCAGCTTTCTTTGATGAGTTAATACCTGAGAACATGACCCCCTGGGTGATCCCCACAACAGAGGgtatgttgtttctgcaagaggatatcactatataggcatcattggtggta Alignment from Pairagon GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCT---CAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG ggcttaatagatacacttcacacgtgatagtatttttctctctattctagGCCACCAAACACGCTGCAAGAGAAACTTCTGAATCCTCAGCAGCTTTCTTTGATGAGTTAATACCTGAGAACATGACCCCCTGGGTGATCCCCACAACAGAGGgtatgttgtttctgcaagaggatatcactatataggcatcattggtggta Alignment from Exonerate_protein2genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCA---GCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG ggcttaatagatacacttcacacgtgatagtatttttctctctattctagGCCACCAAACACGCTGCAAGAGAAACTTCTGAATCCTCAGCAGCTTTCTTTGATGAGTTAATACCTGAGAACATGACCCCCTGGGTGATCCCCACAACAGAGGgtatgttgtttctgcaagaggatatcactatataggcatcattggtggta Alignment from Exonerate_coding2genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCA---GCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG ggcttaatagatacacttcacacgtgatagtatttttctctctattctagGCCACCAAACACGCTGCAAGAGAAACTTCTGAATCCTCAGCAGCTTTCTTTGATGAGTTAATACCTGAGAACATGACCCCCTGGGTGATCCCCACAACAGAGGgtatgttgtttctgcaagaggatatcactatataggcatcattggtggta Alignment from GeneWise GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCC---TTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG ggcttaatagatacacttcacacgtgatagtatttttctctctattctagGCCACCAAACACGCTGCAAGAGAAACTTCTGAATCCTCAGCAGCTTTCTTTGATGAGTTAATACCTGAGAACATGACCCCCTGGGTGATCCCCACAACAGAGGgtatgttgtttctgcaagaggatatcactatataggcatcattggtggta #### Sec31b_ID9044_8 --> 0 - 0 Original Alignment GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ccaggtttagttccactggcatgtgttcctgtctctgtcttgccttccagATAATCTACAAGTTGCCCACACAGAGCAGCTGGTGCTTTGATGTCCAGTGGTGCCCTCCCAGCCCTCCAGTACTTTCCGCTGTCTCTTTTGATGGCTGGATCAGTCTATGTTCTGTAACAGGAAGGAGCTGGGAAGTGCAGCATATGAGATCACCTGACGAGgtaacaaatggttgtattcataagcaggagacttgctggaaatgcaactt Alignment from CESAR GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ccaggtttagttccactggcatgtgttcctgtctctgtcttgccttccagATAATCTACAAGTTGCCCACACAGAGCAGCTGGTGCTTTGATGTCCAGTGGTGCCCTCCCAGCCCTCCAGTACTTTCCGCTGTCTCTTTTGATGGCTGGATCAGTCTATGTTCTGTAACAGGAAGGAGCTGGGAAGTGCAGCATATGAGATCACCTGACGAGgtaacaaatggttgtattcataagcaggagacttgctggaaatgcaactt Alignment from Spaln_aa2Genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ccaggtttagttccactggcatgtgttcctgtctctgtcttgccttccagATAATCTACAAGTTGCCCACACAGAGCAGCTGGTGCTTTGATGTCCAGTGGTGCCCTCCCAGCCCTCCAGTACTTTCCGCTGTCTCTTTTGATGGCTGGATCAGTCTATGTTCTGTAACAGGAAGGAGCTGGGAAGTGCAGCATATGAGATCACCTGACGAGgtaacaaatggttgtattcataagcaggagacttgctggaaatgcaactt Alignment from Spaln_nt2Genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ccaggtttagttccactggcatgtgttcctgtctctgtcttgccttccagATAATCTACAAGTTGCCCACACAGAGCAGCTGGTGCTTTGATGTCCAGTGGTGCCCTCCCAGCCCTCCAGTACTTTCCGCTGTCTCTTTTGATGGCTGGATCAGTCTATGTTCTGTAACAGGAAGGAGCTGGGAAGTGCAGCATATGAGATCACCTGACGAGgtaacaaatggttgtattcataagcaggagacttgctggaaatgcaactt Alignment from Pairagon ------------------------------------------------------TCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG CCAGGTTTAGTTCCACTGGCATGTGTTCCTGTCTCTGTCTTGCCTTCCAGATAATCTACAAGTTGCCCACACAGAGCAGCTGGTGCTTTGATGTCCAGTGGTGCCCTCCCAGCCCTCCAGTACTTTCCGCTGTCTCTTTTGATGGCTGGATCAGTCTATGTTCTGTAACAGGAAGGAGCTGGGAAGTGCAGCATATGAGATCACCTGACGAGgtaacaaatggttgtattcataagcaggagacttgctggaaatgcaactt Alignment from Exonerate_protein2genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ccaggtttagttccactggcatgtgttcctgtctctgtcttgccttccagATAATCTACAAGTTGCCCACACAGAGCAGCTGGTGCTTTGATGTCCAGTGGTGCCCTCCCAGCCCTCCAGTACTTTCCGCTGTCTCTTTTGATGGCTGGATCAGTCTATGTTCTGTAACAGGAAGGAGCTGGGAAGTGCAGCATATGAGATCACCTGACGAGgtaacaaatggttgtattcataagcaggagacttgctggaaatgcaactt Alignment from Exonerate_coding2genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ccaggtttagttccactggcatgtgttcctgtctctgtcttgccttccagATAATCTACAAGTTGCCCACACAGAGCAGCTGGTGCTTTGATGTCCAGTGGTGCCCTCCCAGCCCTCCAGTACTTTCCGCTGTCTCTTTTGATGGCTGGATCAGTCTATGTTCTGTAACAGGAAGGAGCTGGGAAGTGCAGCATATGAGATCACCTGACGAGgtaacaaatggttgtattcataagcaggagacttgctggaaatgcaactt Alignment from GeneWise GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ccaggtttagttccactggcatgtgttcctgtctctgtcttgccttccagATAATCTACAAGTTGCCCACACAGAGCAGCTGGTGCTTTGATGTCCAGTGGTGCCCTCCCAGCCCTCCAGTACTTTCCGCTGTCTCTTTTGATGGCTGGATCAGTCTATGTTCTGTAACAGGAAGGAGCTGGGAAGTGCAGCATATGAGATCACCTGACGAGgtaacaaatggttgtattcataagcaggagacttgctggaaatgcaactt #### Sec31b_ID9046_6 --> 0 - 2 Original Alignment ATGAACTGCTCGGGCCTGGCCTGGAACCCAGACATAGCCACTCAGTTAGTGCTGTGCTCAGAAGACGACCAACTCCCG---GTGATTCAGTTGTGGGACCTGCGCTTCGCTTCGTCACCCTTGAAGGTGCTGGAGAGCCACAGCag atctagtgaaacatcattcgtcagaattctggttcctttttgttcattagATGAATTGTTCAGGTCTAGATTGGAATCCAGACTTGGCCAATCAATTAGTGTTGTGCACAGAAGATGACCAACTGCCTGTGGTCATACCATTGTGGGATCTGCATTTTGCATCATCACCATTAAAGGTTTTGGAGAGTCACAGCaggtgagtgctacaccctaataatcttgagagtcatgcaaacttgctaatca Alignment from CESAR ATGAACTGCTCGGGCCTGGCCTGGAACCCAGACATAGCCACTCAGTTAGTGCTGTGCTCAGAAGACGACCAACTCCCGGTG---ATTCAGTTGTGGGACCTGCGCTTCGCTTCGTCACCCTTGAAGGTGCTGGAGAGCCACAGCag atctagtgaaacatcattcgtcagaattctggttcctttttgttcattagATGAATTGTTCAGGTCTAGATTGGAATCCAGACTTGGCCAATCAATTAGTGTTGTGCACAGAAGATGACCAACTGCCTGTGGTCATACCATTGTGGGATCTGCATTTTGCATCATCACCATTAAAGGTTTTGGAGAGTCACAGCaggtgagtgctacaccctaataatcttgagagtcatgcaaacttgctaatca Alignment from Spaln_aa2Genome ATGAACTGCTCGGGCCTGGCCTGGAACCCAGACATAGCCACTCAGTTAGTGCTGTGCTCAGAAGACGACCAACTCCCG---GTGATTCAGTTGTGGGACCTGCGCTTCGCTTCGTCACCCTTGAAGGTGCTGGAGAGCCACAGCAG atctagtgaaacatcattcgtcagaattctggttcctttttgttcattagATGAATTGTTCAGGTCTAGATTGGAATCCAGACTTGGCCAATCAATTAGTGTTGTGCACAGAAGATGACCAACTGCCTGTGGTCATACCATTGTGGGATCTGCATTTTGCATCATCACCATTAAAGGTTTTGGAGAGTCACAGCAGgtgagtgctacaccctaataatcttgagagtcatgcaaacttgctaatca Alignment from Spaln_nt2Genome ATGAACTGCTCGGGCCTGGCCTGGAACCCAGACATAGCCACTCAGTTAGTGCTGTGCTCAGAAGACGACCAACTCCCGGTG---ATTCAGTTGTGGGACCTGCGCTTCGCTTCGTCACCCTTGAAGGTGCTGGAGAGCCACAGCAG atctagtgaaacatcattcgtcagaattctggttcctttttgttcattagATGAATTGTTCAGGTCTAGATTGGAATCCAGACTTGGCCAATCAATTAGTGTTGTGCACAGAAGATGACCAACTGCCTGTGGTCATACCATTGTGGGATCTGCATTTTGCATCATCACCATTAAAGGTTTTGGAGAGTCACAGCAGgtgagtgctacaccctaataatcttgagagtcatgcaaacttgctaatca Alignment from Pairagon ATGAACTGCTCGGGCCTGGCCTGGAACCCAGACATAGCCACTCAGTTAGTGCTGTGCTCAGAAGACGACCAACTCCC---GGTGATTCAGTTGTGGGACCTGCGCTTCGCTTCGTCACCCTTGAAGGTGCTGGAGAGCCACAGCAG atctagtgaaacatcattcgtcagaattctggttcctttttgttcattagATGAATTGTTCAGGTCTAGATTGGAATCCAGACTTGGCCAATCAATTAGTGTTGTGCACAGAAGATGACCAACTGCCTGTGGTCATACCATTGTGGGATCTGCATTTTGCATCATCACCATTAAAGGTTTTGGAGAGTCACAGCAGgtgagtgctacaccctaataatcttgagagtcatgcaaacttgctaatca Alignment from Exonerate_protein2genome ATGAACTGCTCGGGCCTGGCCTGGAACCCAGACATAGCCACTCAGTTAGTGCTGTGCTCAGAAGACGACCAACTCCCG---GTGATTCAGTTGTGGGACCTGCGCTTCGCTTCGTCACCCTTGAAGGTGCTGGAGAGCCACAGCAG atctagtgaaacatcattcgtcagaattctggttcctttttgttcattagATGAATTGTTCAGGTCTAGATTGGAATCCAGACTTGGCCAATCAATTAGTGTTGTGCACAGAAGATGACCAACTGCCTGTGGTCATACCATTGTGGGATCTGCATTTTGCATCATCACCATTAAAGGTTTTGGAGAGTCACAGCAGgtgagtgctacaccctaataatcttgagagtcatgcaaacttgctaatca Alignment from Exonerate_coding2genome atctagtgaaacatcattcgtcagaattctggttcctttttgttcattagatgaattgttcaggtctagattggaatccagacttggccaatcaattagtgttgtgcacagaagatgaccaactgcctgtggtcataccattgtgggatctgcattttgcatcatcaccattaaaggttttggagagtcacagcaggtgagtgctacaccctaataatcttgagagtcatgcaaacttgctaatca Alignment from GeneWise ATGAACTGCTCGGGCCTGGCCTGGAACCCAGACATAGCCACTCAGTTAGTGCTGTGCTCAGAAGACGACCAACTCCCGGTG---ATTCAGTTGTGGGACCTGCGCTTCGCTTCGTCACCCTTGAAGGTGCTGGAGAGCCACAGCAG atctagtgaaacatcattcgtcagaattctggttcctttttgttcattagATGAATTGTTCAGGTCTAGATTGGAATCCAGACTTGGCCAATCAATTAGTGTTGTGCACAGAAGATGACCAACTGCCTGTGGTCATACCATTGTGGGATCTGCATTTTGCATCATCACCATTAAAGGTTTTGGAGAGTCACAGCAGgtgagtgctacaccctaataatcttgagagtcatgcaaacttgctaatca #### Sema4g_ID9250_8 --> 0 - 2 Original Alignment GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGtg ttagttctaccccctagttttatggactctttgttatttccgtttaccagGGAGATCTAGCTGGAGAAGAAATTTTACAGAAGAAGTGGGAATCCTTCCTGAAGGCACGACTAATCTGCCATGTTCCTAAGTATGACACATTACGGGGAGTCTGCAGTCTTAATGCTGATACATCTTCTCACACACATTTCTATTCTGTCTTTATGCTATCAACCCAGtggtgtgtatggagaatgggtatatatagcaggtaagcacaagagagtcagc Alignment from CESAR GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGtg ttagttctaccccctagttttatggactctttgttatttccgtttaccagGGAGATCTAGCTGGAGAAGAAATTTTACAGAAGAAGTGGGAATCCTTCCTGAAGGCACGACTAATCTGCCATGTTCCTAAGTATGACACATTACGGGGAGTCTGCAGTCTTAATGCTGATACATCTTCTCACACACATTTCTATTCTGTCTTTATGCTATCAACCCAGtggtgtgtatggagaatgggtatatatagcaggtaagcacaagagagtcagc Alignment from Spaln_aa2Genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG ttagttctaccccctagttttatggactctttgttatttccgtttaccagGGAGATCTAGCTGGAGAAGAAATTTTACAGAAGAAGTGGGAATCCTTCCTGAAGGCACGACTAATCTGCCATGTTCCTAAGTATGACACATTACGGGGAGTCTGCAGTCTTAATGCTGATACATCTTCTCACACACATTTCTATTCTGTCTTTATGCTATCAACCCAGTGgtgtgtatggagaatgggtatatatagcaggtaagcacaagagagtcagc Alignment from Spaln_nt2Genome GGAGATCTGGGAGG-GAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG ttagttctaccccctagttttatggactctttgttatttccgtttaccagGGAGATCTAGCTGGAGAAGAA-ATTTTACAGAAGAAGTGGGAATCCTTCCTGAAGGCACGACTAATCTGCCATGTTCCTAAGTATGACACATTACGGGGAGTCTGCAGTCTTAATGCTGATACATCTTCTCACACACATTTCTATTCTGTCTTTATGCTATCAACCCAGTGgtgtgtatggagaatgggtatatatagcaggtaagcacaagagagtcagc Alignment from Pairagon GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG ttagttctaccccctagttttatggactctttgttatttccgtttaccagGGAGATCTAGCTGGAGAAGAAATTTTACAGAAGAAGTGGGAATCCTTCCTGAAGGCACGACTAATCTGCCATGTTCCTAAGTATGACACATTACGGGGAGTCTGCAGTCTTAATGCTGATACATCTTCTCACACACATTTCTATTCTGTCTTTATGCTATCAACCCAGTGgtgtgtatggagaatgggtatatatagcaggtaagcacaagagagtcagc Alignment from Exonerate_protein2genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG ttagttctaccccctagttttatggactctttgttatttccgtttaccagGGAGATCTAGCTGGAGAAGAAATTTTACAGAAGAAGTGGGAATCCTTCCTGAAGGCACGACTAATCTGCCATGTTCCTAAGTATGACACATTACGGGGAGTCTGCAGTCTTAATGCTGATACATCTTCTCACACACATTTCTATTCTGTCTTTATGCTATCAACCCAGTGgtgtgtatggagaatgggtatatatagcaggtaagcacaagagagtcagc Alignment from Exonerate_coding2genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG ttagttctaccccctagttttatggactctttgttatttccgtttaccagGGAGATCTAGCTGGAGAAGAAATTTTACAGAAGAAGTGGGAATCCTTCCTGAAGGCACGACTAATCTGCCATGTTCCTAAGTATGACACATTACGGGGAGTCTGCAGTCTTAATGCTGATACATCTTCTCACACACATTTCTATTCTGTCTTTATGCTATCAACCCAGTGgtgtgtatggagaatgggtatatatagcaggtaagcacaagagagtcagc Alignment from GeneWise GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG ttagttctaccccctagttttatggactctttgttatttccgtttaccagGGAGATCTAGCTGGAGAAGAAATTTTACAGAAGAAGTGGGAATCCTTCCTGAAGGCACGACTAATCTGCCATGTTCCTAAGTATGACACATTACGGGGAGTCTGCAGTCTTAATGCTGATACATCTTCTCACACACATTTCTATTCTGTCTTTATGCTATCAACCCAGTGgtgtgtatggagaatgggtatatatagcaggtaagcacaagagagtcagc #### Sema4g_ID9255_13 --> 1 - 1 Original Alignment gACAGAATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAg ttcaccaactggtagtagtattgtaatactcacgacttcttcctctctagaACAGAACTAATACAAGACATTGAAAGAGGAAATCTAGGCTGTGAGGACAGCCGGGATGCTggtgagtagaactgacacctaacttggattctaggccatttaaccatgcct Alignment from CESAR gACAGAATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAg ttcaccaactggtagtagtattgtaatactcacgacttcttcctctctagaACAGAACTAATACAAGACATTGAAAGAGGAAATCTAGGCTGTGAGGACAGCCGGGATGCTggtgagtagaactgacacctaacttggattctaggccatttaaccatgcct Alignment from Spaln_aa2Genome GACAGAATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAG ttcaccaactggtagtagtattgtaatactcacgacttcttcctctctagAACAGAACTAATACAAGACATTGAAAGAGGAAATCTAGGCTGTGAGGACAGCCGGGATGCTGgtgagtagaactgacacctaacttggattctaggccatttaaccatgcct Alignment from Spaln_nt2Genome GACAGAATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAG ttcaccaactggtagtagtattgtaatactcacgacttcttcctctctagAACAGAACTAATACAAGACATTGAAAGAGGAAATCTAGGCTGTGAGGACAGCCGGGATGCTGgtgagtagaactgacacctaacttggattctaggccatttaaccatgcct Alignment from Pairagon GACAGAATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAG ttcaccaactggtagtagtattgtaatactcacgacttcttcctctctagAACAGAACTAATACAAGACATTGAAAGAGGAAATCTAGGCTGTGAGGACAGCCGGGATGCTGgtgagtagaactgacacctaacttggattctaggccatttaaccatgcct Alignment from Exonerate_protein2genome GACAGAATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAG ttcaccaactggtagtagtattgtaatactcacgacttcttcctctctagAACAGAACTAATACAAGACATTGAAAGAGGAAATCTAGGCTGTGAGGACAGCCGGGATGCTGgtgagtagaactgacacctaacttggattctaggccatttaaccatgcct Alignment from Exonerate_coding2genome GACAGAATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAG ttcaccaactggtagtagtattgtaatactcacgacttcttcctctctagAACAGAACTAATACAAGACATTGAAAGAGGAAATCTAGGCTGTGAGGACAGCCGGGATGCTGgtgagtagaactgacacctaacttggattctaggccatttaaccatgcct Alignment from GeneWise GACAGAATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAG ttcaccaactggtagtagtattgtaatactcacgacttcttcctctctagAACAGAACTAATACAAGACATTGAAAGAGGAAATCTAGGCTGTGAGGACAGCCGGGATGCTGgtgagtagaactgacacctaacttggattctaggccatttaaccatgcct #### Sf1_ID1658_3 --> 2 - 2 Original Alignment tgCAACTACAGATAGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACag cactcctgttagggtccccaattgcttgtaaagtctccttcctttcacagtgCAACTACAGATAGAAGACCTTACCCGTAAACTGCGTACAGGAGATCTGGACATACCCCCTAACCCTGAGGACaggtgagtatcaattttcatcaaatgacggcaatccttagatttattgcatt Alignment from CESAR tgCAACTACAGATAGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACag cactcctgttagggtccccaattgcttgtaaagtctccttcctttcacagtgCAACTACAGATAGAAGACCTTACCCGTAAACTGCGTACAGGAGATCTGGACATACCCCCTAACCCTGAGGACaggtgagtatcaattttcatcaaatgacggcaatccttagatttattgcatt Alignment from Spaln_aa2Genome TGCAACTACAGATAGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACAG cactcctgttagggtccccaattgcttgtaaagtctccttcctttcacagTGCAACTACAGATAGAAGACCTTACCCGTAAACTGCGTACAGGAGATCTGGACATACCCCCTAACCCTGAGGACAGgtgagtatcaattttcatcaaatgacggcaatccttagatttattgcatt Alignment from Spaln_nt2Genome TGCAACTACAGATAGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACAG cactcctgttagggtccccaattgcttgtaaagtctccttcctttcacagTGCAACTACAGATAGAAGACCTTACCCGTAAACTGCGTACAGGAGATCTGGACATACCCCCTAACCCTGAGGACAGgtgagtatcaattttcatcaaatgacggcaatccttagatttattgcatt Alignment from Pairagon TGCAACTACAGATAGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACAG cactcctgttagggtccccaattgcttgtaaagtctccttcctttcacagTGCAACTACAGATAGAAGACCTTACCCGTAAACTGCGTACAGGAGATCTGGACATACCCCCTAACCCTGAGGACAGgtgagtatcaattttcatcaaatgacggcaatccttagatttattgcatt Alignment from Exonerate_protein2genome TGCAACTACAGATAGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACAG cactcctgttagggtccccaattgcttgtaaagtctccttcctttcacagTGCAACTACAGATAGAAGACCTTACCCGTAAACTGCGTACAGGAGATCTGGACATACCCCCTAACCCTGAGGACAGgtgagtatcaattttcatcaaatgacggcaatccttagatttattgcatt Alignment from Exonerate_coding2genome TGCAACTACAGATAGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACAG cactcctgttagggtccccaattgcttgtaaagtctccttcctttcacagTGCAACTACAGATAGAAGACCTTACCCGTAAACTGCGTACAGGAGATCTGGACATACCCCCTAACCCTGAGGACAGgtgagtatcaattttcatcaaatgacggcaatccttagatttattgcatt Alignment from GeneWise TGCAACTACAGATAGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACAG cactcctgttagggtccccaattgcttgtaaagtctccttcctttcacagTGCAACTACAGATAGAAGACCTTACCCGTAAACTGCGTACAGGAGATCTGGACATACCCCCTAACCCTGAGGACAGgtgagtatcaattttcatcaaatgacggcaatccttagatttattgcatt #### Sf1_ID1666_7 --> 0 - 2 Original Alignment ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATag agccaaactgccatgtttttgaataaggacactacatgtcttcattccagATCCGAAATATGCTAAAGCAAGGTATTAAAACCCCTAAAGGCCAAAATGATCTACACAAGATGCAGCTTCGGGAGCTGGCTCACCTAAATGGCACTCTACGGGAGGAA---GCGcagtaatattgaatgttgaagaaaaggcatgggcaggtatcagttttaacgg Alignment from CESAR ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATag agccaaactgccatgtttttgaataaggacactacatgtcttcattccagATCCGAAATATGCTAAAGCAAGGTATTAAAACCCCTAAAGGCCAAAATGATCTACACAAGATGCAGCTTCGGGAGCTGGCTCACCTAAATGGCACTCTACGGGAG---GAAGCGcagtaatattgaatgttgaagaaaaggcatgggcaggtatcagttttaacgg Alignment from Spaln_aa2Genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATAG agccaaactgccatgtttttgaataaggacactacatgtcttcattccagATCCGAAATATGCTAAAGCAAGGTATTAAAACCCCTAAAGGCCAAAATGATCTACACAAGATGCAGCTTCGGGAGCTGGCTCACCTAAATGGCACTCTACGGGAG---GAAGCGCAgtaatattgaatgttgaagaaaaggcatgggcaggtatcagttttaacgg Alignment from Spaln_nt2Genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAA agccaaactgccatgtttttgaataaggacactacatgtcttcattccagATCCGAAATATGCTAAAGCAAGGTATTAAAACCCCTAAAGGCCAAAATGATCTACACAAGATGCAGCTTCGGGAGCTGGCTCACCTAAATGGCACTCTACGGGAGGAAGCGCAgtaatattgaatgttgaagaaaaggcatgggcaggtatcagttttaacgg Alignment from Pairagon ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGA----------------------------------------------------------- agccaaactgccatgtttttgaataaggacactacatgtcttcattccagATCCGAAATATGCTAAAGCAAGGTATTAAAACCCCTAAAGGCCAAAATGATCTACACAAGATGCAGCTTCGGGAGCTGGCTCACCTAAATGGCACTCTACGGGAGGAAGCGCAGTAATATTGAATGTTGAAGAAAAGGCATGGGCAGGTATCAGTTTTAACGG Alignment from Exonerate_protein2genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAA agccaaactgccatgtttttgaataaggacactacatgtcttcattccagATCCGAAATATGCTAAAGCAAGGTATTAAAACCCCTAAAGGCCAAAATGATCTACACAAGATGCAGCTTCGGGAGCTGGCTCACCTAAATGGCACTCTACGGGAGGAAGCGCAgtaatattgaatgttgaagaaaaggcatgggcaggtatcagttttaacgg Alignment from Exonerate_coding2genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAA agccaaactgccatgtttttgaataaggacactacatgtcttcattccagATCCGAAATATGCTAAAGCAAGGTATTAAAACCCCTAAAGGCCAAAATGATCTACACAAGATGCAGCTTCGGGAGCTGGCTCACCTAAATGGCACTCTACGGGAGGAAGCGCAgtaatattgaatgttgaagaaaaggcatgggcaggtatcagttttaacgg Alignment from GeneWise ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAA agccaaactgccatgtttttgaataaggacactacatgtcttcattccagATCCGAAATATGCTAAAGCAAGGTATTAAAACCCCTAAAGGCCAAAATGATCTACACAAGATGCAGCTTCGGGAGCTGGCTCACCTAAATGGCACTCTACGGGAGGAAGCGCAgtaatattgaatgttgaagaaaaggcatgggcaggtatcagttttaacgg #### Sf1_ID1668_9 --> 1 - 0 Original Alignment gCCTGGCGACCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAGAATATTTGTCCCTTATGGCTGAGCTAGGGGAAGCTCCTGTCCCTGCATCTGTGGGCTCTACCTCTGGGCCTGCCACCACGCCCCTGGCTAGTGCACCAAGACCTGCTGCTCCTGCCAGCAACCCACCACCACCG aattggacaaaaaacaagttaactaatctgactggatcttcatattgtaggCCTGGTGATCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAAAATATTTGTCCCTTATGGTGGAGTTAGGAGAAGCTCCTGTCCCTGCATCTGTGGGCTCTACCTCTGGGCCTGCCACCACGCCCCTGGCTAGTGCACCGAGACCTGCTGCTCCTGCCAGTAACCCACCACCACCTgtaagttctataaatcttatggtcaatcttccacatcaattcctcagagg Alignment from CESAR gCCTGGCGACCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAGAATATTTGTCCCTTATGGCTGAGCTAGGGGAAGCTCCTGTCCCTGCATCTGTGGGCTCTACCTCTGGGCCTGCCACCACGCCCCTGGCTAGTGCACCAAGACCTGCTGCTCCTGCCAGCAACCCACCACCACCG aattggacaaaaaacaagttaactaatctgactggatcttcatattgtaggCCTGGTGATCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAAAATATTTGTCCCTTATGGTGGAGTTAGGAGAAGCTCCTGTCCCTGCATCTGTGGGCTCTACCTCTGGGCCTGCCACCACGCCCCTGGCTAGTGCACCGAGACCTGCTGCTCCTGCCAGTAACCCACCACCACCTgtaagttctataaatcttatggtcaatcttccacatcaattcctcagagg Alignment from Spaln_aa2Genome GCCTGGCGACCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAGAATATTTGTCCCTTATGGCTGAGCTAGGGGAAGCTCCTGTCCCTGCATCTGTGGGCTCTACCTCTGGGCCTGCCACCACGCCCCTGGCTAGTGCACCAAGACCTGCTGCTCCTGCCAGCAACCCACCACCACCG aattggacaaaaaacaagttaactaatctgactggatcttcatattgtagGCCTGGTGATCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAAAATATTTGTCCCTTATGGTGGAGTTAGGAGAAGCTCCTGTCCCTGCATCTGTGGGCTCTACCTCTGGGCCTGCCACCACGCCCCTGGCTAGTGCACCGAGACCTGCTGCTCCTGCCAGTAACCCACCACCACCTgtaagttctataaatcttatggtcaatcttccacatcaattcctcagagg Alignment from Spaln_nt2Genome GCCTGGCGACCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAGAATATTTGTCCCTTATGGCTGAGCTAGGGGAAGCTCCTGTCCCTGCATCTGTGGGCTCTACCTCTGGGCCTGCCACCACGCCCCTGGCTAGTGCACCAAGACCTGCTGCTCCTGCCAGCAACCCACCACCACCG aattggacaaaaaacaagttaactaatctgactggatcttcatattgtagGCCTGGTGATCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAAAATATTTGTCCCTTATGGTGGAGTTAGGAGAAGCTCCTGTCCCTGCATCTGTGGGCTCTACCTCTGGGCCTGCCACCACGCCCCTGGCTAGTGCACCGAGACCTGCTGCTCCTGCCAGTAACCCACCACCACCTgtaagttctataaatcttatggtcaatcttccacatcaattcctcagagg Alignment from Pairagon GCCTGGCGACCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAGAATATTTGTCCCTTATGGCTGAGCTAGGGGAAGCTCCTGTCCCTGCATCTGTGGGCTCTACCTCTGGGCCTGCCACCACGCCCCTGGCTAGTGCACCAAGACCTGCTGCTCCTGCCAGCAACCCACCACCACCG aattggacaaaaaacaagttaactaatctgactggatcttcatattgtagGCCTGGTGATCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAAAATATTTGTCCCTTATGGTGGAGTTAGGAGAAGCTCCTGTCCCTGCATCTGTGGGCTCTACCTCTGGGCCTGCCACCACGCCCCTGGCTAGTGCACCGAGACCTGCTGCTCCTGCCAGTAACCCACCACCACCTgtaagttctataaatcttatggtcaatcttccacatcaattcctcagagg Alignment from Exonerate_protein2genome GCCTGGCGACCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAGAATATTTGTCCCTTATGGCTGAGCTAGGGGAAGCTCCTGTCCCTGCATCTGTGGGCTCTACCTCTGGGCCTGCCACCACGCCCCTGGCTAGTGCACCAAGACCTGCTGCTCCTGCCAGCAACCCACCACCACCG aattggacaaaaaacaagttaactaatctgactggatcttcatattgtagGCCTGGTGATCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAAAATATTTGTCCCTTATGGTGGAGTTAGGAGAAGCTCCTGTCCCTGCATCTGTGGGCTCTACCTCTGGGCCTGCCACCACGCCCCTGGCTAGTGCACCGAGACCTGCTGCTCCTGCCAGTAACCCACCACCACCTgtaagttctataaatcttatggtcaatcttccacatcaattcctcagagg Alignment from Exonerate_coding2genome GCCTGGCGACCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAGAATATTTGTCCCTTATGGCTGAGCTAGGGGAAGCTCCTGTCCCTGCATCTGTGGGCTCTACCTCTGGGCCTGCCACCACGCCCCTGGCTAGTGCACCAAGACCTGCTGCTCCTGCCAGCAACCCACCACCACCG aattggacaaaaaacaagttaactaatctgactggatcttcatattgtagGCCTGGTGATCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAAAATATTTGTCCCTTATGGTGGAGTTAGGAGAAGCTCCTGTCCCTGCATCTGTGGGCTCTACCTCTGGGCCTGCCACCACGCCCCTGGCTAGTGCACCGAGACCTGCTGCTCCTGCCAGTAACCCACCACCACCTgtaagttctataaatcttatggtcaatcttccacatcaattcctcagagg Alignment from GeneWise GCCTGGCGACCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAGAATATTTGTCCCTTATGGCTGAGCTAGGGGAAGCTCCTGTCCCTGCATCTGTGGGCTCTACCTCTGGGCCTGCCACCACGCCCCTGGCTAGTGCACCAAGACCTGCTGCTCCTGCCAGCAACCCACCACCACCG aattggacaaaaaacaagttaactaatctgactggatcttcatattgtagGCCTGGTGATCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAAAATATTTGTCCCTTATGGTGGAGTTAGGAGAAGCTCCTGTCCCTGCATCTGTGGGCTCTACCTCTGGGCCTGCCACCACGCCCCTGGCTAGTGCACCGAGACCTGCTGCTCCTGCCAGTAACCCACCACCACCTgtaagttctataaatcttatggtcaatcttccacatcaattcctcagagg #### Sf1_ID1671_12 --> 2 - 1 Original Alignment gtATGATGCCGCCGCCGCCTATGGGCATGATGCCGCCGCCTCCGCCACCTCCCAGTGGGCAGCCCCCGCCTCCTCCCTCTGGTCCTCTTCCTCCATGGCAGCAGCAGCAGCAGCAGCCTCCGCCACCCCCTCCGCCCAGCAGCAGTATGGCTTCCAGCACCCCCTTGCCATGGCAGCAAa actctgacctctctcactcatgactccactcctcccctgtctccctgcaggtATGATGCCACCACCGCCTATGGGTACTATGCCACCACCCCCACCACCTCCCAGTGGGCAGCCCCCACCTCCTCCATCCGGCCCTCTTCCACCATGGCAGCAACAACAGCAACGGCCACCACCACCCCCCCCACCCAGCAGCAGTATGGCTGCAAGCACCCCCCTGCCATGGCAGCAAagtaaaagtattattttaccttattgtggaggtcaaggtgtgtttgttggt Alignment from CESAR gtATGATGCCGCCGCCGCCTATGGGCATGATGCCGCCGCCTCCGCCACCTCCCAGTGGGCAGCCCCCGCCTCCTCCCTCTGGTCCTCTTCCTCCATGGCAGCAGCAGCAGCAGCAGCCTCCGCCACCCCCTCCGCCCAGCAGCAGTATGGCTTCCAGCACCCCCTTGCCATGGCAGCAAa actctgacctctctcactcatgactccactcctcccctgtctccctgcaggtATGATGCCACCACCGCCTATGGGTACTATGCCACCACCCCCACCACCTCCCAGTGGGCAGCCCCCACCTCCTCCATCCGGCCCTCTTCCACCATGGCAGCAACAACAGCAACGGCCACCACCACCCCCCCCACCCAGCAGCAGTATGGCTGCAAGCACCCCCCTGCCATGGCAGCAAagtaaaagtattattttaccttattgtggaggtcaaggtgtgtttgttggt Alignment from Spaln_aa2Genome GTATGATGCCGCCGCCGCCTATGGGCATGATGCCGCCGCCTCCGCCACCTCCCAGTGGGCAGCCCCCGCCTCCTCCCTCTGGTCCTCTTCCTCCATGGCAGCAGCAGCAGCAGCAGCCTCCGCCACCCCCTCCGCCCAGCAGCAGTATGGCTTCCAGCACCCCCTTGCCATGGCAGCAAA actctgacctctctcactcatgactccactcctcccctgtctccctgcagGTATGATGCCACCACCGCCTATGGGTACTATGCCACCACCCCCACCACCTCCCAGTGGGCAGCCCCCACCTCCTCCATCCGGCCCTCTTCCACCATGGCAGCAACAACAGCAACGGCCACCACCACCCCCCCCACCCAGCAGCAGTATGGCTGCAAGCACCCCCCTGCCATGGCAGCAAAgtaaaagtattattttaccttattgtggaggtcaaggtgtgtttgttggt Alignment from Spaln_nt2Genome GTATGATGCCGCCGCCGCCTATGGGCATGATGCCGCCGCCTCCGCCACCTCCCAGTGGGCAGCCCCCGCCTCCTCCCTCTGGTCCTCTTCCTCCATGGCAGCAGCAGCAGCAGCAGCCTCCGCCACCCCCTCCGCCCAGCAGCAGTATGGCTTCCAGCACCCCCTTGCCATGGCAGCAAA actctgacctctctcactcatgactccactcctcccctgtctccctgcagGTATGATGCCACCACCGCCTATGGGTACTATGCCACCACCCCCACCACCTCCCAGTGGGCAGCCCCCACCTCCTCCATCCGGCCCTCTTCCACCATGGCAGCAACAACAGCAACGGCCACCACCACCCCCCCCACCCAGCAGCAGTATGGCTGCAAGCACCCCCCTGCCATGGCAGCAAAgtaaaagtattattttaccttattgtggaggtcaaggtgtgtttgttggt Alignment from Pairagon GTATGATGCCGCCGCCGCCTATGGGCATGATGCCGCCGCCTCCGCCACCTCCCAGTGGGCAGCCCCCGCCTCCTCCCTCTGGTCCTCTTCCTCCATGGCAGCAGCAGCAGCAGCAGCCTCCGCCACCCCCTCCGCCCAGCAGCAGTATGGCTTCCAGCACCCCCTTGCCATGGCAGCAAA actctgacctctctcactcatgactccactcctcccctgtctccctgcagGTATGATGCCACCACCGCCTATGGGTACTATGCCACCACCCCCACCACCTCCCAGTGGGCAGCCCCCACCTCCTCCATCCGGCCCTCTTCCACCATGGCAGCAACAACAGCAACGGCCACCACCACCCCCCCCACCCAGCAGCAGTATGGCTGCAAGCACCCCCCTGCCATGGCAGCAAAgtaaaagtattattttaccttattgtggaggtcaaggtgtgtttgttggt Alignment from Exonerate_protein2genome GTATGATGCCGCCGCCGCCTATGGGCATGATGCCGCCGCCTCCGCCACCTCCCAGTGGGCAGCCCCCGCCTCCTCCCTCTGGTCCTCTTCCTCCATGGCAGCAGCAGCAGCAGCAGCCTCCGCCACCCCCTCCGCCCAGCAGCAGTATGGCTTCCAGCACCCCCTTGCCATGGCAGCAAA actctgacctctctcactcatgactccactcctcccctgtctccctgcagGTATGATGCCACCACCGCCTATGGGTACTATGCCACCACCCCCACCACCTCCCAGTGGGCAGCCCCCACCTCCTCCATCCGGCCCTCTTCCACCATGGCAGCAACAACAGCAACGGCCACCACCACCCCCCCCACCCAGCAGCAGTATGGCTGCAAGCACCCCCCTGCCATGGCAGCAAAgtaaaagtattattttaccttattgtggaggtcaaggtgtgtttgttggt Alignment from Exonerate_coding2genome GTATGATGCCGCCGCCGCCTATGGGCATGATGCCGCCGCCTCCGCCACCTCCCAGTGGGCAGCCCCCGCCTCCTCCCTCTGGTCCTCTTCCTCCATGGCAGCAGCAGCAGCAGCAGCCTCCGCCACCCCCTCCGCCCAGCAGCAGTATGGCTTCCAGCACCCCCTTGCCATGGCAGCAAA actctgacctctctcactcatgactccactcctcccctgtctccctgcagGTATGATGCCACCACCGCCTATGGGTACTATGCCACCACCCCCACCACCTCCCAGTGGGCAGCCCCCACCTCCTCCATCCGGCCCTCTTCCACCATGGCAGCAACAACAGCAACGGCCACCACCACCCCCCCCACCCAGCAGCAGTATGGCTGCAAGCACCCCCCTGCCATGGCAGCAAAgtaaaagtattattttaccttattgtggaggtcaaggtgtgtttgttggt Alignment from GeneWise GTATGATGCCGCCGCCGCCTATGGGCATGATGCCGCCGCCTCCGCCACCTCCCAGTGGGCAGCCCCCGCCTCCTCCCTCTGGTCCTCTTCCTCCATGGCAGCAGCAGCAGCAGCAGCCTCCGCCACCCCCTCCGCCCAGCAGCAGTATGGCTTCCAGCACCCCCTTGCCATGGCAGCAAA actctgacctctctcactcatgactccactcctcccctgtctccctgcagGTATGATGCCACCACCGCCTATGGGTACTATGCCACCACCCCCACCACCTCCCAGTGGGCAGCCCCCACCTCCTCCATCCGGCCCTCTTCCACCATGGCAGCAACAACAGCAACGGCCACCACCACCCCCCCCACCCAGCAGCAGTATGGCTGCAAGCACCCCCCTGCCATGGCAGCAAAgtaaaagtattattttaccttattgtggaggtcaaggtgtgtttgttggt #### Sf3b2_ID900_18 --> 1 - 2 Original Alignment cGGCCTCATCACTCCCGGAGGATTCTCATCCGTGCCAGCTGGGATGGAGACCCCTGAACTCATTGAGCTGAGGAAGAAGAAGATCGAAGAGGCGATGGATgg cgcaatggatgtgcctttcttcgcagtatctcttcctgcttgtttaacagtGGTCTAATCACAGCCGGGGGCCTCTCATCTGTGCCAGCTGGGATTGATACCCCAAAACTTACTGAGCTTAGGAAAAAGAAGATAGAGGAGGCCATGGAAgggtaagtgacttgacagtcagtatggtgactaaatatgaatctgtatctag Alignment from CESAR cGGCCTCATCACTCCCGGAGGATTCTCATCCGTGCCAGCTGGGATGGAGACCCCTGAACTCATTGAGCTGAGGAAGAAGAAGATCGAAGAGGCGATGGATgg cgcaatggatgtgcctttcttcgcagtatctcttcctgcttgtttaacagtGGTCTAATCACAGCCGGGGGCCTCTCATCTGTGCCAGCTGGGATTGATACCCCAAAACTTACTGAGCTTAGGAAAAAGAAGATAGAGGAGGCCATGGAAgggtaagtgacttgacagtcagtatggtgactaaatatgaatctgtatctag Alignment from Spaln_aa2Genome CGGCCTCATCACTCCCGGAGGATTCTCATCCGTGCCAGCTGGGATGGAGACCCCTGAACTCATTGAGCTGAGGAAGAAGAAGATCGAAGAGGCGATGGATGG cgcaatggatgtgcctttcttcgcagtatctcttcctgcttgtttaacagTGGTCTAATCACAGCCGGGGGCCTCTCATCTGTGCCAGCTGGGATTGATACCCCAAAACTTACTGAGCTTAGGAAAAAGAAGATAGAGGAGGCCATGGAAGGgtaagtgacttgacagtcagtatggtgactaaatatgaatctgtatctag Alignment from Spaln_nt2Genome CGGCCTCATCACTCCCGGAGGATTCTCATCCGTGCCAGCTGGGATGGAGACCCCTGAACTCATTGAGCTGAGGAAGAAGAAGATCGAAGAGGCGATGGATGG cgcaatggatgtgcctttcttcgcagtatctcttcctgcttgtttaacagTGGTCTAATCACAGCCGGGGGCCTCTCATCTGTGCCAGCTGGGATTGATACCCCAAAACTTACTGAGCTTAGGAAAAAGAAGATAGAGGAGGCCATGGAAGGgtaagtgacttgacagtcagtatggtgactaaatatgaatctgtatctag Alignment from Pairagon CGGCCTCATCACTCCCGGAGGATTCTCATCCGTGCCAGCTGGGATGGAGACCCCTGAACTCATTGAGCTGAGGAAGAAGAAGATCGAAGAGGCGATGGATGG cgcaatggatgtgcctttcttcgcagtatctcttcctgcttgtttaacagTGGTCTAATCACAGCCGGGGGCCTCTCATCTGTGCCAGCTGGGATTGATACCCCAAAACTTACTGAGCTTAGGAAAAAGAAGATAGAGGAGGCCATGGAAGGgtaagtgacttgacagtcagtatggtgactaaatatgaatctgtatctag Alignment from Exonerate_protein2genome CGGCCTCATCACTCCCGGAGGATTCTCATCCGTGCCAGCTGGGATGGAGACCCCTGAACTCATTGAGCTGAGGAAGAAGAAGATCGAAGAGGCGATGGATGG cgcaatggatgtgcctttcttcgcagtatctcttcctgcttgtttaacagTGGTCTAATCACAGCCGGGGGCCTCTCATCTGTGCCAGCTGGGATTGATACCCCAAAACTTACTGAGCTTAGGAAAAAGAAGATAGAGGAGGCCATGGAAGGgtaagtgacttgacagtcagtatggtgactaaatatgaatctgtatctag Alignment from Exonerate_coding2genome CGGCCTCATCACTCCCGGAGGATTCTCATCCGTGCCAGCTGGGATGGAGACCCCTGAACTCATTGAGCTGAGGAAGAAGAAGATCGAAGAGGCGATGGATGG cgcaatggatgtgcctttcttcgcagtatctcttcctgcttgtttaacagTGGTCTAATCACAGCCGGGGGCCTCTCATCTGTGCCAGCTGGGATTGATACCCCAAAACTTACTGAGCTTAGGAAAAAGAAGATAGAGGAGGCCATGGAAGGgtaagtgacttgacagtcagtatggtgactaaatatgaatctgtatctag Alignment from GeneWise CGGCCTCATCACTCCCGGAGGATTCTCATCCGTGCCAGCTGGGATGGAGACCCCTGAACTCATTGAGCTGAGGAAGAAGAAGATCGAAGAGGCGATGGATGG cgcaatggatgtgcctttcttcgcagtatctcttcctgcttgtttaacagTGGTCTAATCACAGCCGGGGGCCTCTCATCTGTGCCAGCTGGGATTGATACCCCAAAACTTACTGAGCTTAGGAAAAAGAAGATAGAGGAGGCCATGGAAGGgtaagtgacttgacagtcagtatggtgactaaatatgaatctgtatctag #### Sf3b2_ID906_12 --> 0 - 0 Original Alignment CTGGTGGCCCGGCCTGATGTTGTGGAGATGCATGACGTGACGGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCCGTCCCTGTGCCACGCCACTGGTGTTTTAAGCGCAAGTACCTTCAAGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGCATTCAGGAAATGAGAGAGGCCCTGCAGGAGAAG gctttatcactacctatcacttccgttcttccttttcctttccctcctagCTAGTGGCCCGGCCTGATGTTGTGGAGATGCATGATGTGACTGCACAGGACCCCAAGGTCTTGGTCCACCTCAAGGCCACCCGGAACTCTGTCCCTGTACCACACCACTGGTGTTTTAAGCGTAAGTACCTTCATGGCAAAAGGGGCATTGAGAAGCCCCCTTTTGAGCTGCCAGATTTCATCAAACGCACAGGTATTCAGGAAATGAGAGAAGCCCTACAAGAGAAGgtgcccaatattaggaggagaggaagagtgcacttcctctttcaagagca Alignment from CESAR CTGGTGGCCCGGCCTGATGTTGTGGAGATGCATGACGTGACGGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCCGTCCCTGTGCCACGCCACTGGTGTTTTAAGCGCAAGTACCTTCAAGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGCATTCAGGAAATGAGAGAGGCCCTGCAGGAGAAG gctttatcactacctatcacttccgttcttccttttcctttccctcctagCTAGTGGCCCGGCCTGATGTTGTGGAGATGCATGATGTGACTGCACAGGACCCCAAGGTCTTGGTCCACCTCAAGGCCACCCGGAACTCTGTCCCTGTACCACACCACTGGTGTTTTAAGCGTAAGTACCTTCATGGCAAAAGGGGCATTGAGAAGCCCCCTTTTGAGCTGCCAGATTTCATCAAACGCACAGGTATTCAGGAAATGAGAGAAGCCCTACAAGAGAAGgtgcccaatattaggaggagaggaagagtgcacttcctctttcaagagca Alignment from Spaln_aa2Genome CTGGTGGCCCGGCCTGATGTTGTGGAGATGCATGACGTGACGGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCCGTCCCTGTGCCACGCCACTGGTGTTTTAAGCGCAAGTACCTTCAAGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGCATTCAGGAAATGAGAGAGGCCCTGCAGGAGAAG gctttatcactacctatcacttccgttcttccttttcctttccctcctagCTAGTGGCCCGGCCTGATGTTGTGGAGATGCATGATGTGACTGCACAGGACCCCAAGGTCTTGGTCCACCTCAAGGCCACCCGGAACTCTGTCCCTGTACCACACCACTGGTGTTTTAAGCGTAAGTACCTTCATGGCAAAAGGGGCATTGAGAAGCCCCCTTTTGAGCTGCCAGATTTCATCAAACGCACAGGTATTCAGGAAATGAGAGAAGCCCTACAAGAGAAGgtgcccaatattaggaggagaggaagagtgcacttcctctttcaagagca Alignment from Spaln_nt2Genome CTGGTGGCCCGGCCTGATGTTGTGGAGATGCATGACGTGACGGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCCGTCCCTGTGCCACGCCACTGGTGTTTTAAGCGCAAGTACCTTCAAGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGCATTCAGGAAATGAGAGAGGCCCTGCAGGAGAAG gctttatcactacctatcacttccgttcttccttttcctttccctcctagCTAGTGGCCCGGCCTGATGTTGTGGAGATGCATGATGTGACTGCACAGGACCCCAAGGTCTTGGTCCACCTCAAGGCCACCCGGAACTCTGTCCCTGTACCACACCACTGGTGTTTTAAGCGTAAGTACCTTCATGGCAAAAGGGGCATTGAGAAGCCCCCTTTTGAGCTGCCAGATTTCATCAAACGCACAGGTATTCAGGAAATGAGAGAAGCCCTACAAGAGAAGgtgcccaatattaggaggagaggaagagtgcacttcctctttcaagagca Alignment from Pairagon CTGGTGGCCCGGCCTGATGTTGTGGAGATGCATGACGTGACGGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCCGTCCCTGTGCCACGCCACTGGTGTTTTAAGCGCAAGTACCTTCAAGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGCATTCAGGAAATGAGAGAGGCCCTGCAGGAGAAG gctttatcactacctatcacttccgttcttccttttcctttccctcctagCTAGTGGCCCGGCCTGATGTTGTGGAGATGCATGATGTGACTGCACAGGACCCCAAGGTCTTGGTCCACCTCAAGGCCACCCGGAACTCTGTCCCTGTACCACACCACTGGTGTTTTAAGCGTAAGTACCTTCATGGCAAAAGGGGCATTGAGAAGCCCCCTTTTGAGCTGCCAGATTTCATCAAACGCACAGGTATTCAGGAAATGAGAGAAGCCCTACAAGAGAAGgtgcccaatattaggaggagaggaagagtgcacttcctctttcaagagca Alignment from Exonerate_protein2genome CTGGTGGCCCGGCCTGATGTTGTGGAGATGCATGACGTGACGGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCCGTCCCTGTGCCACGCCACTGGTGTTTTAAGCGCAAGTACCTTCAAGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGCATTCAGGAAATGAGAGAGGCCCTGCAGGAGAAG gctttatcactacctatcacttccgttcttccttttcctttccctcctagCTAGTGGCCCGGCCTGATGTTGTGGAGATGCATGATGTGACTGCACAGGACCCCAAGGTCTTGGTCCACCTCAAGGCCACCCGGAACTCTGTCCCTGTACCACACCACTGGTGTTTTAAGCGTAAGTACCTTCATGGCAAAAGGGGCATTGAGAAGCCCCCTTTTGAGCTGCCAGATTTCATCAAACGCACAGGTATTCAGGAAATGAGAGAAGCCCTACAAGAGAAGgtgcccaatattaggaggagaggaagagtgcacttcctctttcaagagca Alignment from Exonerate_coding2genome CTGGTGGCCCGGCCTGATGTTGTGGAGATGCATGACGTGACGGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCCGTCCCTGTGCCACGCCACTGGTGTTTTAAGCGCAAGTACCTTCAAGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGCATTCAGGAAATGAGAGAGGCCCTGCAGGAGAAG gctttatcactacctatcacttccgttcttccttttcctttccctcctagCTAGTGGCCCGGCCTGATGTTGTGGAGATGCATGATGTGACTGCACAGGACCCCAAGGTCTTGGTCCACCTCAAGGCCACCCGGAACTCTGTCCCTGTACCACACCACTGGTGTTTTAAGCGTAAGTACCTTCATGGCAAAAGGGGCATTGAGAAGCCCCCTTTTGAGCTGCCAGATTTCATCAAACGCACAGGTATTCAGGAAATGAGAGAAGCCCTACAAGAGAAGgtgcccaatattaggaggagaggaagagtgcacttcctctttcaagagca Alignment from GeneWise CTGGTGGCCCGGCCTGATGTTGTGGAGATGCATGACGTGACGGCACAGGACCCCAAGCTCTTGGTCCACCTCAAGGCCACCCGGAACTCCGTCCCTGTGCCACGCCACTGGTGTTTTAAGCGCAAGTACCTTCAAGGCAAACGGGGCATTGAGAAGCCCCCCTTTGAGCTGCCAGACTTCATCAAACGCACAGGCATTCAGGAAATGAGAGAGGCCCTGCAGGAGAAG gctttatcactacctatcacttccgttcttccttttcctttccctcctagCTAGTGGCCCGGCCTGATGTTGTGGAGATGCATGATGTGACTGCACAGGACCCCAAGGTCTTGGTCCACCTCAAGGCCACCCGGAACTCTGTCCCTGTACCACACCACTGGTGTTTTAAGCGTAAGTACCTTCATGGCAAAAGGGGCATTGAGAAGCCCCCTTTTGAGCTGCCAGATTTCATCAAACGCACAGGTATTCAGGAAATGAGAGAAGCCCTACAAGAGAAGgtgcccaatattaggaggagaggaagagtgcacttcctctttcaagagca #### Sf3b2_ID907_11 --> 0 - 0 Original Alignment GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG cagagctgcctcacacaatgatgcctaaatctttgcttctttttttacagAAGAAAAAGCCAGAGGCCCCCAAACTATCGCGAAAGAAGTTGCGTCGTATGAACCGGTTTACAGTTGCAGAATTAAAGCAAgtaacaaattttgggaaggtcaagccagctactccagctctgtaaatcgt Alignment from CESAR GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG cagagctgcctcacacaatgatgcctaaatctttgcttctttttttacagAAGAAAAAGCCAGAGGCCCCCAAACTATCGCGAAAGAAGTTGCGTCGTATGAACCGGTTTACAGTTGCAGAATTAAAGCAAgtaacaaattttgggaaggtcaagccagctactccagctctgtaaatcgt Alignment from Spaln_aa2Genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG cagagctgcctcacacaatgatgcctaaatctttgcttctttttttacagAAGAAAAAGCCAGAGGCCCCCAAACTATCGCGAAAGAAGTTGCGTCGTATGAACCGGTTTACAGTTGCAGAATTAAAGCAAgtaacaaattttgggaaggtcaagccagctactccagctctgtaaatcgt Alignment from Spaln_nt2Genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG cagagctgcctcacacaatgatgcctaaatctttgcttctttttttacagAAGAAAAAGCCAGAGGCCCCCAAACTATCGCGAAAGAAGTTGCGTCGTATGAACCGGTTTACAGTTGCAGAATTAAAGCAAgtaacaaattttgggaaggtcaagccagctactccagctctgtaaatcgt Alignment from Pairagon GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG cagagctgcctcacacaatgatgcctaaatctttgcttctttttttacagAAGAAAAAGCCAGAGGCCCCCAAACTATCGCGAAAGAAGTTGCGTCGTATGAACCGGTTTACAGTTGCAGAATTAAAGCAAgtaacaaattttgggaaggtcaagccagctactccagctctgtaaatcgt Alignment from Exonerate_protein2genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG cagagctgcctcacacaatgatgcctaaatctttgcttctttttttacagAAGAAAAAGCCAGAGGCCCCCAAACTATCGCGAAAGAAGTTGCGTCGTATGAACCGGTTTACAGTTGCAGAATTAAAGCAAgtaacaaattttgggaaggtcaagccagctactccagctctgtaaatcgt Alignment from Exonerate_coding2genome cagagctgcctcacacaatgatgcctaaatctttgcttctttttttacagaagaaaaagccagaggcccccaaactatcgcgaaagaagttgcgtcgtatgaaccggtttacagttgcagaattaaagcaagtaacaaattttgggaaggtcaagccagctactccagctctgtaaatcgt Alignment from GeneWise GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG cagagctgcctcacacaatgatgcctaaatctttgcttctttttttacagAAGAAAAAGCCAGAGGCCCCCAAACTATCGCGAAAGAAGTTGCGTCGTATGAACCGGTTTACAGTTGCAGAATTAAAGCAAgtaacaaattttgggaaggtcaagccagctactccagctctgtaaatcgt #### Sf3b2_ID910_8 --> 2 - 0 Original Alignment agGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG tgcagcaagttgtggttaattgtggccaaactagtctccctccccttcagaaAAAGCAGAAATGGAGACAGTCACTCGCTCATCTCTGGGACCATCGGCATCTGAGACTGAGGAAGACACAGTATCCATATCTAAAATAGAGgtgagtatttatcaagttgggggccacttttctgtgagcttcttacattc Alignment from CESAR agGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG tgcagcaagttgtggttaattgtggccaaactagtctccctccccttcagaaAAAGCAGAAATGGAGACAGTCACTCGCTCATCTCTGGGACCATCGGCATCTGAGACTGAGGAAGACACAGTATCCATATCTAAAATAGAGgtgagtatttatcaagttgggggccacttttctgtgagcttcttacattc Alignment from Spaln_aa2Genome CAGGAGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagttgtggttaattgtggccaaactagtctccctccccttca gAAAAAGCAGAAATGGAGACAGTCACTCGCTCATCTCTGGGACCATCGGCATCTGAGACTGAGGAAGACACAGTATCCATATCTAAAATAGAGgtgagtatttatcaagttgggggccacttttctgtgagcttcttacattc Alignment from Spaln_nt2Genome AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG tgcagcaagttgtggttaattgtggccaaactagtctccctccccttcagAAAAAGCAGAAATGGAGACAGTCACTCGCTCATCTCTGGGACCATCGGCATCTGAGACTGAGGAAGACACAGTATCCATATCTAAAATAGAGgtgagtatttatcaagttgggggccacttttctgtgagcttcttacattc Alignment from Pairagon AAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG tgcagcaagttgtggttaattgtggccaaactagtctccctccccttcagaaaaagcagAAATGGAGACAGTCACTCGCTCATCTCTGGGACCATCGGCATCTGAGACTGAGGAAGACACAGTATCCATATCTAAAATAGAGgtgagtatttatcaagttgggggccacttttctgtgagcttcttacattc Alignment from Exonerate_protein2genome AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG tgcagcaagttgtggttaattgtggccaaactagtctccctccccttcagAAAAAGCAGAAATGGAGACAGTCACTCGCTCATCTCTGGGACCATCGGCATCTGAGACTGAGGAAGACACAGTATCCATATCTAAAATAGAGgtgagtatttatcaagttgggggccacttttctgtgagcttcttacattc Alignment from Exonerate_coding2genome tgcagcaagttgtggttaattgtggccaaactagtctccctccccttcagaaaaagcagaaatggagacagtcactcgctcatctctgggaccatcggcatctgagactgaggaagacacagtatccatatctaaaatagaggtgagtatttatcaagttgggggccacttttctgtgagcttcttacattc Alignment from GeneWise AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG tgcagcaagttgtggttaattgtggccaaactagtctccctccccttcagAAAAAGCAGAAATGGAGACAGTCACTCGCTCATCTCTGGGACCATCGGCATCTGAGACTGAGGAAGACACAGTATCCATATCTAAAATAGAGgtgagtatttatcaagttgggggccacttttctgtgagcttcttacattc #### Sf3b2_ID914_4 --> 0 - 0 Original Alignment CTGTCTGGGATTCCTATGCCACCACCACCTATGGGACTTCCCCCTCTACAGCCTCCTCCACCACCTCCACCACCTCCACCAGGCCTTGGCCTTGGCTTTCCTATGGCTCACCCACCAAATCTGGGGCCCCCACCACCTCTTCGAGTGGGTGAGCCTGTGGCGCTGTCAGAAGAAGAACGGCTGAAGCTGGCACAGCAGCAGGCAGCTTTGCTGATGCAGCAAGAGGAGCGTGCCAAGCAG ctctctgcgcatatattttctgctaaaaataatctgttttttatcttcagCTATCTGGGATTCATATGCCACCCCCACCAATGGGACTTCCACCACTGCAGCCTCCCCAACCACCTCCACCACCCCCACCCGGCCTTGGCCTTGCATTCCCTATGGCACACCCACCTAATTTGGGGCCCCCCCCACCTCTTCAAGTTGGTAAGCCTGTTGCACTATCGGAAGAGGAACAGTTAAAGCTGGCACAGAAACAGGCAGCCTTATTGATGCAGCAAGAGGAACATGCCAAGCAGgtgaggtgtacaatggctaatattggacacacaataggacatttatggat Alignment from CESAR CTGTCTGGGATTCCTATGCCACCACCACCTATGGGACTTCCCCCTCTACAGCCTCCTCCACCACCTCCACCACCTCCACCAGGCCTTGGCCTTGGCTTTCCTATGGCTCACCCACCAAATCTGGGGCCCCCACCACCTCTTCGAGTGGGTGAGCCTGTGGCGCTGTCAGAAGAAGAACGGCTGAAGCTGGCACAGCAGCAGGCAGCTTTGCTGATGCAGCAAGAGGAGCGTGCCAAGCAG ctctctgcgcatatattttctgctaaaaataatctgttttttatcttcagCTATCTGGGATTCATATGCCACCCCCACCAATGGGACTTCCACCACTGCAGCCTCCCCAACCACCTCCACCACCCCCACCCGGCCTTGGCCTTGCATTCCCTATGGCACACCCACCTAATTTGGGGCCCCCCCCACCTCTTCAAGTTGGTAAGCCTGTTGCACTATCGGAAGAGGAACAGTTAAAGCTGGCACAGAAACAGGCAGCCTTATTGATGCAGCAAGAGGAACATGCCAAGCAGgtgaggtgtacaatggctaatattggacacacaataggacatttatggat Alignment from Spaln_aa2Genome CTGTCTGGGATTCCTATGCCACCACCACCTATGGGACTTCCCCCTCTACAGCCTCCTCCACCACCTCCACCACCTCCACCAGGCCTTGGCCTTGGCTTTCCTATGGCTCACCCACCAAATCTGGGGCCCCCACCACCTCTTCGAGTGGGTGAGCCTGTGGCGCTGTCAGAAGAAGAACGGCTGAAGCTGGCACAGCAGCAGGCAGCTTTGCTGATGCAGCAAGAGGAGCGTGCCAAGCAG ctctctgcgcatatattttctgctaaaaataatctgttttttatcttcagCTATCTGGGATTCATATGCCACCCCCACCAATGGGACTTCCACCACTGCAGCCTCCCCAACCACCTCCACCACCCCCACCCGGCCTTGGCCTTGCATTCCCTATGGCACACCCACCTAATTTGGGGCCCCCCCCACCTCTTCAAGTTGGTAAGCCTGTTGCACTATCGGAAGAGGAACAGTTAAAGCTGGCACAGAAACAGGCAGCCTTATTGATGCAGCAAGAGGAACATGCCAAGCAGgtgaggtgtacaatggctaatattggacacacaataggacatttatggat Alignment from Spaln_nt2Genome CTGTCTGGGATTCCTATGCCACCACCACCTATGGGACTTCCCCCTCTACAGCCTCCTCCACCACCTCCACCACCTCCACCAGGCCTTGGCCTTGGCTTTCCTATGGCTCACCCACCAAATCTGGGGCCCCCACCACCTCTTCGAGTGGGTGAGCCTGTGGCGCTGTCAGAAGAAGAACGGCTGAAGCTGGCACAGCAGCAGGCAGCTTTGCTGATGCAGCAAGAGGAGCGTGCCAAGCAG ctctctgcgcatatattttctgctaaaaataatctgttttttatcttcagCTATCTGGGATTCATATGCCACCCCCACCAATGGGACTTCCACCACTGCAGCCTCCCCAACCACCTCCACCACCCCCACCCGGCCTTGGCCTTGCATTCCCTATGGCACACCCACCTAATTTGGGGCCCCCCCCACCTCTTCAAGTTGGTAAGCCTGTTGCACTATCGGAAGAGGAACAGTTAAAGCTGGCACAGAAACAGGCAGCCTTATTGATGCAGCAAGAGGAACATGCCAAGCAGgtgaggtgtacaatggctaatattggacacacaataggacatttatggat Alignment from Pairagon CTGTCTGGGATTCCTATGCCACCACCACCTATGGGACTTCCCCCTCTACAGCCTCCTCCACCACCTCCACCACCTCCACCAGGCCTTGGCCTTGGCTTTCCTATGGCTCACCCACCAAATCTGGGGCCCCCACCACCTCTTCGAGTGGGTGAGCCTGTGGCGCTGTCAGAAGAAGAACGGCTGAAGCTGGCACAGCAGCAGGCAGCTTTGCTGATGCAGCAAGAGGAGCGTGCCAAGCAG ctctctgcgcatatattttctgctaaaaataatctgttttttatcttcagCTATCTGGGATTCATATGCCACCCCCACCAATGGGACTTCCACCACTGCAGCCTCCCCAACCACCTCCACCACCCCCACCCGGCCTTGGCCTTGCATTCCCTATGGCACACCCACCTAATTTGGGGCCCCCCCCACCTCTTCAAGTTGGTAAGCCTGTTGCACTATCGGAAGAGGAACAGTTAAAGCTGGCACAGAAACAGGCAGCCTTATTGATGCAGCAAGAGGAACATGCCAAGCAGgtgaggtgtacaatggctaatattggacacacaataggacatttatggat Alignment from Exonerate_protein2genome CTGTCTGGGATTCCTATGCCACCACCACCTATGGGACTTCCCCCTCTACAGCCTCCTCCACCACCTCCACCACCTCCACCAGGCCTTGGCCTTGGCTTTCCTATGGCTCACCCACCAAATCTGGGGCCCCCACCACCTCTTCGAGTGGGTGAGCCTGTGGCGCTGTCAGAAGAAGAACGGCTGAAGCTGGCACAGCAGCAGGCAGCTTTGCTGATGCAGCAAGAGGAGCGTGCCAAGCAG ctctctgcgcatatattttctgctaaaaataatctgttttttatcttcagCTATCTGGGATTCATATGCCACCCCCACCAATGGGACTTCCACCACTGCAGCCTCCCCAACCACCTCCACCACCCCCACCCGGCCTTGGCCTTGCATTCCCTATGGCACACCCACCTAATTTGGGGCCCCCCCCACCTCTTCAAGTTGGTAAGCCTGTTGCACTATCGGAAGAGGAACAGTTAAAGCTGGCACAGAAACAGGCAGCCTTATTGATGCAGCAAGAGGAACATGCCAAGCAGgtgaggtgtacaatggctaatattggacacacaataggacatttatggat Alignment from Exonerate_coding2genome ctctctgcgcatatattttctgctaaaaataatctgttttttatcttcagctatctgggattcatatgccacccccaccaatgggacttccaccactgcagcctccccaaccacctccaccacccccacccggccttggccttgcattccctatggcacacccacctaatttggggccccccccacctcttcaagttggtaagcctgttgcactatcggaagaggaacagttaaagctggcacagaaacaggcagccttattgatgcagcaagaggaacatgccaagcaggtgaggtgtacaatggctaatattggacacacaataggacatttatggat Alignment from GeneWise CTGTCTGGGATTCCTATGCCACCACCACCTATGGGACTTCCCCCTCTACAGCCTCCTCCACCACCTCCACCACCTCCACCAGGCCTTGGCCTTGGCTTTCCTATGGCTCACCCACCAAATCTGGGGCCCCCACCACCTCTTCGAGTGGGTGAGCCTGTGGCGCTGTCAGAAGAAGAACGGCTGAAGCTGGCACAGCAGCAGGCAGCTTTGCTGATGCAGCAAGAGGAGCGTGCCAAGCAG ctctctgcgcatatattttctgctaaaaataatctgttttttatcttcagCTATCTGGGATTCATATGCCACCCCCACCAATGGGACTTCCACCACTGCAGCCTCCCCAACCACCTCCACCACCCCCACCCGGCCTTGGCCTTGCATTCCCTATGGCACACCCACCTAATTTGGGGCCCCCCCCACCTCTTCAAGTTGGTAAGCCTGTTGCACTATCGGAAGAGGAACAGTTAAAGCTGGCACAGAAACAGGCAGCCTTATTGATGCAGCAAGAGGAACATGCCAAGCAGgtgaggtgtacaatggctaatattggacacacaataggacatttatggat #### Sfxn2_ID9966_4 --> 1 - 0 Original Alignment gCAGATGGCCCTCTCCTACTTCACAGCTACTACTACTGCGGTGGCCACTGCAGTGGGCATGAACATGTGGACAAAG actgtggactgcctggaagggggtgcctctattttcttctattcttttaggCAT---------------TTCATGGCTACAACGACTGCAGTGGCCACTGCTGTAGGTATGAACATGTGGACAAAGgtgggtgcatgttctgggagaagcactacccttttcaaagttatcaaaca Alignment from CESAR gCAGATGGCCCTCTCCTACTTCACAGCTACTACTACTGCGGTGGCCACTGCAGTGGGCATGAACATGTGGACAAAG actgtggactgcctggaagggggtgcctctattttcttctattcttttaggCAT---------------TTCATGGCTACAACGACTGCAGTGGCCACTGCTGTAGGTATGAACATGTGGACAAAGgtgggtgcatgttctgggagaagcactacccttttcaaagttatcaaaca Alignment from Spaln_aa2Genome CTACTTCACAGCTACTACTACTGCGGTGGCCACTGCAGTGGGCATGAACATGTGGACAAAG actgtggactgcctggaagggggtgcctctattttcttctattcttttagGCATTTCATGGCTACAACGACTGCAGTGGCCACTGCTGTAGGTATGAACATGTGGACAAAGgtgggtgcatgttctgggagaagcactacccttttcaaagttatcaaaca Alignment from Spaln_nt2Genome TCCTACTTCACAGCTACTACTACTGCGGTGGCCACTGCAGTGGGCATGAACATGTGGACAAAG actgtggactgcctggaagggggtgcctctattttcttctattcttttagGC--ATTTCATGGCTACAACGACTGCAGTGGCCACTGCTGTAGGTATGAACATGTGGACAAAGgtgggtgcatgttctgggagaagcactacccttttcaaagttatcaaaca Alignment from Pairagon GCAGATGGCCCTCTCCTACTTCACAGCTACTACTACTGCGGTGGCCACTGCAGTGGGCATGAACATGTGGACAAAG actgtggactgcctggaagggggtgcctctattttcttctattcttttagGC---------------ATTTCATGGCTACAACGACTGCAGTGGCCACTGCTGTAGGTATGAACATGTGGACAAAGgtgggtgcatgttctgggagaagcactacccttttcaaagttatcaaaca Alignment from Exonerate_protein2genome GCAGATGGCCCTCTCCTACTTCACAGCTACTACTACTGCGGTGGCCACTGCAGTGGGCATGAACATGTGGACAAAG actgtggactgcctggaagggggtgcctctattttCTTCTATTCTTTTAGGCATTTCATGGCTACAACGACTGCAGTGGCCACTGCTGTAGGTATGAACATGTGGACAAAGgtgggtgcatgttctgggagaagcactacccttttcaaagttatcaaaca Alignment from Exonerate_coding2genome GCAGATGGCCCTCTCCTACTTCACAGCTACTACTACTGCGGTGGCCACTGCAGTGGGCATGAACATGTGGACAAAG actgtggactgcctggaagggggtgcctctattttCTTCTATTCTTTTAGGCATTTCATGGCTACAACGACTGCAGTGGCCACTGCTGTAGGTATGAACATGTGGACAAAGgtgggtgcatgttctgggagaagcactacccttttcaaagttatcaaaca Alignment from GeneWise GCAGATGGCCCTCTCCTACTTCACAGCTACTACTACTGCGGTGGCCACTGCAGTGGGCATGAACATGTGGACAAAG actgtggactgcctggaagggggtgcctctattttcttctattcttttagG---------------CATTTCATGGCTACAACGACTGCAGTGGCCACTGCTGTAGGTATGAACATGTGGACAAAGgtgggtgcatgttctgggagaagcactacccttttcaaagttatcaaaca #### Sfxn2_ID9969_7 --> 0 - 1 Original Alignment AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCT---GGCATGa cctggccatcagaagcatcctccctggtccacccttatcgtttgctgcagAGAGCAGCAACTGTGACCATCACACAAGTGGTTATCTCTCGTATTTCAATGGCAGCGCCTGCTGGCATGagtgagatttagaaatcctagaactcggtcctccctcttgtaaaaaaaata Alignment from CESAR AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCT---GGCATGa cctggccatcagaagcatcctccctggtccacccttatcgtttgctgcagAGAGCAGCAACTGTGACCATCACACAAGTGGTTATCTCTCGTATTTCAATGGCAGCGCCTGCTGGCATGagtgagatttagaaatcctagaactcggtcctccctcttgtaaaaaaaata Alignment from Spaln_aa2Genome AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCT---GGCATGA cctggccatcagaagcatcctccctggtccacccttatcgtttgctgcagAGAGCAGCAACTGTGACCATCACACAAGTGGTTATCTCTCGTATTTCAATGGCAGCGCCTGCTGGCATGAgtgagatttagaaatcctagaactcggtcctccctcttgtaaaaaaaata Alignment from Spaln_nt2Genome AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCTG---GCATGA cctggccatcagaagcatcctccctggtccacccttatcgtttgctgcagAGAGCAGCAACTGTGACCATCACACAAGTGGTTATCTCTCGTATTTCAATGGCAGCGCCTGCTGGCATGAgtgagatttagaaatcctagaactcggtcctccctcttgtaaaaaaaata Alignment from Pairagon AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCC---CTGGCATGA cctggccatcagaagcatcctccctggtccacccttatcgtttgctgcagAGAGCAGCAACTGTGACCATCACACAAGTGGTTATCTCTCGTATTTCAATGGCAGCGCCTGCTGGCATGAgtgagatttagaaatcctagaactcggtcctccctcttgtaaaaaaaata Alignment from Exonerate_protein2genome AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCT---GGCATGA cctggccatcagaagcatcctccctggtccacccttatcgtttgctgcagAGAGCAGCAACTGTGACCATCACACAAGTGGTTATCTCTCGTATTTCAATGGCAGCGCCTGCTGGCATGAgtgagatttagaaatcctagaactcggtcctccctcttgtaaaaaaaata Alignment from Exonerate_coding2genome AGGGCATCTGTGTGAAGGACAGGAACCAAAATGAGCTTGGCCATTCTCAGAGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCT---GGCATGA CCTGGCCATCAGAAGCATCCTCCCTGGTCCACCCTTATCGTTTGCTGCAGAGAGCAGCAACTGTGACCATCACACAAGTGGTTATCTCTCGTATTTCAATGGCAGCGCCTGCTGGCATGAgtgagatttagaaatcctagaactcggtcctccctcttgtaaaaaaaata Alignment from GeneWise AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCT---GGCATGA cctggccatcagaagcatcctccctggtccacccttatcgtttgctgcagAGAGCAGCAACTGTGACCATCACACAAGTGGTTATCTCTCGTATTTCAATGGCAGCGCCTGCTGGCATGAgtgagatttagaaatcctagaactcggtcctccctcttgtaaaaaaaata #### Sfxn2_ID9972_10 --> 1 - 2 Original Alignment cCTCCTCTTTATGGTGCCAGTGGCGTGCGGACTCTTCCCTCAGGAAtg gcagataggagcttaacaagtgtgccaagaacaatgtgtttctttcctagcCTTCTTTTTATGGCTCCAGTTGCATGTGGTCTGTTCCCACAGGAAtggtaaggccatctgtgcccccttaagaggcctgtgctactctgctctttgg Alignment from CESAR cCTCCTCTTTATGGTGCCAGTGGCGTGCGGACTCTTCCCTCAGGAAtg gcagataggagcttaacaagtgtgccaagaacaatgtgtttctttcctagcCTTCTTTTTATGGCTCCAGTTGCATGTGGTCTGTTCCCACAGGAAtggtaaggccatctgtgcccccttaagaggcctgtgctactctgctctttgg Alignment from Spaln_aa2Genome CCTCCTCTTTATGGTGCCAGTGGCGTGCGGACTCTTCCCTCAGGAATG gcagataggagcttaacaagtgtgccaagaacaatgtgtttctttcctagCCTTCTTTTTATGGCTCCAGTTGCATGTGGTCTGTTCCCACAGGAATGgtaaggccatctgtgcccccttaagaggcctgtgctactctgctctttgg Alignment from Spaln_nt2Genome CCTCCTCTTTATGGTGCCAGTGGCGTGCGGACTCTTCCCTCAGGAATG gcagataggagcttaacaagtgtgccaagaacaatgtgtttctttcctagCCTTCTTTTTATGGCTCCAGTTGCATGTGGTCTGTTCCCACAGGAATGgtaaggccatctgtgcccccttaagaggcctgtgctactctgctctttgg Alignment from Pairagon CCTCCTCTTTATGGTGCCAGTGGCGTGCGGACTCTTCCCTCAGGAATG gcagataggagcttaacaagtgtgccaagaacaatgtgtttctttcctagCCTTCTTTTTATGGCTCCAGTTGCATGTGGTCTGTTCCCACAGGAATGgtaaggccatctgtgcccccttaagaggcctgtgctactctgctctttgg Alignment from Exonerate_protein2genome CCTCCTCTTTATGGTGCCAGTGGCGTGCGGACTCTTCCCTCAGGAATG gcagataggagcttaacaagtgtgccaagaacaatgtgtttctttcctagCCTTCTTTTTATGGCTCCAGTTGCATGTGGTCTGTTCCCACAGGAATGgtaaggccatctgtgcccccttaagaggcctgtgctactctgctctttgg Alignment from Exonerate_coding2genome gcagataggagcttaacaagtgtgccaagaacaatgtgtttctttcctagccttctttttatggctccagttgcatgtggtctgttcccacaggaatggtaaggccatctgtgcccccttaagaggcctgtgctactctgctctttgg Alignment from GeneWise gcagataggagcttaacaagtgtgccaagaacaatgtgtttctttcctagccttctttttatggctccagttgcatgtggtctgttcccacaggaatggtaaggccatctgtgcccccttaagaggcctgtgctactctgctctttgg #### Sfxn3_ID9284_2 --> 1 - 2 Original Alignment gGCTGGTGTGGCAACCCCGGGTCTCACTGAGGACCAGCTATGGCGAGCCAAATACGTGTATGACTCAGCATTCCATCCGGACACGGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTCACCTTCTACag tcacacacgactcctttcctagcatttctaagtcattgttttcattacaggGCAGGTCCAGCGACCCCTGGTCTCACTGAGGACCAGCTATGGCGCGCTAAATATGTGTATGATTCATCATTCCATCCAGATACCGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCTCAGGTGCCCATGAACATGACCATTACAGGCTGTATGCTTTCCTTTTACaggtgagaactaattttgtcaggatgactgcatatggatgattgtatacctt Alignment from CESAR gGCTGGTGTGGCAACCCCGGGTCTCACTGAGGACCAGCTATGGCGAGCCAAATACGTGTATGACTCAGCATTCCATCCGGACACGGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTCACCTTCTACag tcacacacgactcctttcctagcatttctaagtcattgttttcattacaggGCAGGTCCAGCGACCCCTGGTCTCACTGAGGACCAGCTATGGCGCGCTAAATATGTGTATGATTCATCATTCCATCCAGATACCGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCTCAGGTGCCCATGAACATGACCATTACAGGCTGTATGCTTTCCTTTTACaggtgagaactaattttgtcaggatgactgcatatggatgattgtatacctt Alignment from Spaln_aa2Genome GGCTGGTGTGGCAACCCCGGGTCTCACTGAGGACCAGCTATGGCGAGCCAAATACGTGTATGACTCAGCATTCCATCCGGACACGGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTCACCTTCTACAG tcacacacgactcctttcctagcatttctaagtcattgttttcattacagGGCAGGTCCAGCGACCCCTGGTCTCACTGAGGACCAGCTATGGCGCGCTAAATATGTGTATGATTCATCATTCCATCCAGATACCGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCTCAGGTGCCCATGAACATGACCATTACAGGCTGTATGCTTTCCTTTTACAGgtgagaactaattttgtcaggatgactgcatatggatgattgtatacctt Alignment from Spaln_nt2Genome GGCTGGTGTGGCAACCCCGGGTCTCACTGAGGACCAGCTATGGCGAGCCAAATACGTGTATGACTCAGCATTCCATCCGGACACGGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTCACCTTCTACAG tcacacacgactcctttcctagcatttctaagtcattgttttcattacagGGCAGGTCCAGCGACCCCTGGTCTCACTGAGGACCAGCTATGGCGCGCTAAATATGTGTATGATTCATCATTCCATCCAGATACCGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCTCAGGTGCCCATGAACATGACCATTACAGGCTGTATGCTTTCCTTTTACAGgtgagaactaattttgtcaggatgactgcatatggatgattgtatacctt Alignment from Pairagon GGCTGGTGTGGCAACCCCGGGTCTCACTGAGGACCAGCTATGGCGAGCCAAATACGTGTATGACTCAGCATTCCATCCGGACACGGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTCACCTTCTACAG tcacacacgactcctttcctagcatttctaagtcattgttttcattacagGGCAGGTCCAGCGACCCCTGGTCTCACTGAGGACCAGCTATGGCGCGCTAAATATGTGTATGATTCATCATTCCATCCAGATACCGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCTCAGGTGCCCATGAACATGACCATTACAGGCTGTATGCTTTCCTTTTACAGgtgagaactaattttgtcaggatgactgcatatggatgattgtatacctt Alignment from Exonerate_protein2genome GGCTGGTGTGGCAACCCCGGGTCTCACTGAGGACCAGCTATGGCGAGCCAAATACGTGTATGACTCAGCATTCCATCCGGACACGGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTCACCTTCTACAG tcacacacgactcctttcctagcatttctaagtcattgttttcattacagGGCAGGTCCAGCGACCCCTGGTCTCACTGAGGACCAGCTATGGCGCGCTAAATATGTGTATGATTCATCATTCCATCCAGATACCGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCTCAGGTGCCCATGAACATGACCATTACAGGCTGTATGCTTTCCTTTTACAGgtgagaactaattttgtcaggatgactgcatatggatgattgtatacctt Alignment from Exonerate_coding2genome tcacacacgactcctttcctagcatttctaagtcattgttttcattacagggcaggtccagcgacccctggtctcactgaggaccagctatggcgcgctaaatatgtgtatgattcatcattccatccagataccggggagaaggtggtcttgattggccgtatgtcagctcaggtgcccatgaacatgaccattacaggctgtatgctttccttttacaggtgagaactaattttgtcaggatgactgcatatggatgattgtatacctt Alignment from GeneWise GGCTGGTGTGGCAACCCCGGGTCTCACTGAGGACCAGCTATGGCGAGCCAAATACGTGTATGACTCAGCATTCCATCCGGACACGGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTCACCTTCTACAG tcacacacgactcctttcctagcatttctaagtcattgttttcattacagGGCAGGTCCAGCGACCCCTGGTCTCACTGAGGACCAGCTATGGCGCGCTAAATATGTGTATGATTCATCATTCCATCCAGATACCGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCTCAGGTGCCCATGAACATGACCATTACAGGCTGTATGCTTTCCTTTTACAGgtgagaactaattttgtcaggatgactgcatatggatgattgtatacctt #### Sfxn3_ID9285_3 --> 1 - 2 Original Alignment gAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGca ataaaaatcttatacatctgaacccagtctgtctgtctctgtccccacagaAAGACTCCCACTGTGGTGTTTTGGCAGTGGGTGAATAAATCATTTAATGCTATTATTAACTACTCTAATCGGAGTGGAGATGCCCCTATCACTGTCaggtgagtcacaaccctacacaaacatccctagtccccatggttatggtttt Alignment from CESAR gAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGca ataaaaatcttatacatctgaacccagtctgtctgtctctgtccccacagaAAGACTCCCACTGTGGTGTTTTGGCAGTGGGTGAATAAATCATTTAATGCTATTATTAACTACTCTAATCGGAGTGGAGATGCCCCTATCACTGTCaggtgagtcacaaccctacacaaacatccctagtccccatggttatggtttt Alignment from Spaln_aa2Genome GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ataaaaatcttatacatctgaacccagtctgtctgtctctgtccccacagAAAGACTCCCACTGTGGTGTTTTGGCAGTGGGTGAATAAATCATTTAATGCTATTATTAACTACTCTAATCGGAGTGGAGATGCCCCTATCACTGTCAGgtgagtcacaaccctacacaaacatccctagtccccatggttatggtttt Alignment from Spaln_nt2Genome GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ataaaaatcttatacatctgaacccagtctgtctgtctctgtccccacagAAAGACTCCCACTGTGGTGTTTTGGCAGTGGGTGAATAAATCATTTAATGCTATTATTAACTACTCTAATCGGAGTGGAGATGCCCCTATCACTGTCAGgtgagtcacaaccctacacaaacatccctagtccccatggttatggtttt Alignment from Pairagon GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ataaaaatcttatacatctgaacccagtctgtctgtctctgtccccacagAAAGACTCCCACTGTGGTGTTTTGGCAGTGGGTGAATAAATCATTTAATGCTATTATTAACTACTCTAATCGGAGTGGAGATGCCCCTATCACTGTCAGgtgagtcacaaccctacacaaacatccctagtccccatggttatggtttt Alignment from Exonerate_protein2genome GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ataaaaatcttatacatctgaacccagtctgtctgtctctgtccccacagAAAGACTCCCACTGTGGTGTTTTGGCAGTGGGTGAATAAATCATTTAATGCTATTATTAACTACTCTAATCGGAGTGGAGATGCCCCTATCACTGTCAGgtgagtcacaaccctacacaaacatccctagtccccatggttatggtttt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ataaaaatcttatacatctgaacccagtctgtctgtctctgtccccacagAAAGACTCCCACTGTGGTGTTTTGGCAGTGGGTGAATAAATCATTTAATGCTATTATTAACTACTCTAATCGGAGTGGAGATGCCCCTATCACTGTCAGgtgagtcacaaccctacacaaacatccctagtccccatggttatggtttt #### Shoc2_ID11418_4 --> 0 - 0 Original Alignment AGTCTTTTATCCAGTCTTGTAAAATTGAAT---AGCTTGACCTTAGCTAGAAATTGCTTCCAGTTATATCCAGTGGGAGGTCCATCTCAGTTTTCCACCATTTATTCCCTCAACATGGAACACAATCGAATCAACAAAATCCCATTTGGAATTTTTTCCAGAGCTAAAGTGTTA---AGTAAGCTGAATATGAAG caacagcattttagcaatttgctaaatgaataattttactgctttatcagAGTCTCTTATCTAGTCTTATCAGATTGAAGAACAGCTTGACTCTAGCAAGAACCTGCTTCCACCTATATCTGGTGGGTGGCCCATCCCAGATCACCACAATCTATTCGCTGAATATGGGACACAATCGGATCAACAAAATCCCATTTGATATCTTTTCTAGGACTAAAATCTTAATAAGTGAATTGAATATGAAAgtaaagaaagtgcacatcttaccaatcccatatataacatctctaaatgg Alignment from CESAR AGTCTTTTATCCAGTCTTGTAAAATTG---AATAGCTTGACCTTAGCTAGAAATTGCTTCCAGTTATATCCAGTGGGAGGTCCATCTCAGTTTTCCACCATTTATTCCCTCAACATGGAACACAATCGAATCAACAAAATCCCATTTGGAATTTTTTCCAGAGCTAAAGTGTTA---AGTAAGCTGAATATGAAG caacagcattttagcaatttgctaaatgaataattttactgctttatcagAGTCTCTTATCTAGTCTTATCAGATTGAAGAACAGCTTGACTCTAGCAAGAACCTGCTTCCACCTATATCTGGTGGGTGGCCCATCCCAGATCACCACAATCTATTCGCTGAATATGGGACACAATCGGATCAACAAAATCCCATTTGATATCTTTTCTAGGACTAAAATCTTAATAAGTGAATTGAATATGAAAgtaaagaaagtgcacatcttaccaatcccatatataacatctctaaatgg Alignment from Spaln_aa2Genome AGTCTTTTATCCAGTCTTGTAAAATTG---AATAGCTTGACCTTAGCTAGAAATTGCTTCCAGTTATATCCAGTGGGAGGTCCATCTCAGTTTTCCACCATTTATTCCCTCAACATGGAACACAATCGAATCAACAAAATCCCATTTGGAATTTTTTCCAGAGCTAAAGTGTTA---AGTAAGCTGAATATGAAG caacagcattttagcaatttgctaaatgaataattttactgctttatcagAGTCTCTTATCTAGTCTTATCAGATTGAAGAACAGCTTGACTCTAGCAAGAACCTGCTTCCACCTATATCTGGTGGGTGGCCCATCCCAGATCACCACAATCTATTCGCTGAATATGGGACACAATCGGATCAACAAAATCCCATTTGATATCTTTTCTAGGACTAAAATCTTAATAAGTGAATTGAATATGAAAgtaaagaaagtgcacatcttaccaatcccatatataacatctctaaatgg Alignment from Spaln_nt2Genome AGTCTTTTATCCAGTCTTGTAAAATTGAATA---GCTTGACCTTAGCTAGAAATTGCTTCCAGTTATATCCAGTGGGAGGTCCATCTCAGTTTTCCACCATTTATTCCCTCAACATGGAACACAATCGAATCAACAAAATCCCATTTGGAATTTTTTCCAGAGCTAAAGTGTTAA---GTAAGCTGAATATGAAG caacagcattttagcaatttgctaaatgaataattttactgctttatcagAGTCTCTTATCTAGTCTTATCAGATTGAAGAACAGCTTGACTCTAGCAAGAACCTGCTTCCACCTATATCTGGTGGGTGGCCCATCCCAGATCACCACAATCTATTCGCTGAATATGGGACACAATCGGATCAACAAAATCCCATTTGATATCTTTTCTAGGACTAAAATCTTAATAAGTGAATTGAATATGAAAgtaaagaaagtgcacatcttaccaatcccatatataacatctctaaatgg Alignment from Pairagon AGTCTTTTATCCAGTCTTGTAAAATT---GAATAGCTTGACCTTAGCTAGAAATTGCTTCCAGTTATATCCAGTGGGAGGTCCATCTCAGTTTTCCACCATTTATTCCCTCAACATGGAACACAATCGAATCAACAAAATCCCATTTGGAATTTTTTCCAGAGCTAAAGTGT---TAAGTAAGCTGAATATGAAG caacagcattttagcaatttgctaaatgaataattttactgctttatcagAGTCTCTTATCTAGTCTTATCAGATTGAAGAACAGCTTGACTCTAGCAAGAACCTGCTTCCACCTATATCTGGTGGGTGGCCCATCCCAGATCACCACAATCTATTCGCTGAATATGGGACACAATCGGATCAACAAAATCCCATTTGATATCTTTTCTAGGACTAAAATCTTAATAAGTGAATTGAATATGAAAgtaaagaaagtgcacatcttaccaatcccatatataacatctctaaatgg Alignment from Exonerate_protein2genome AGTCTTTTATCCAGTCTTGTAAAATTG---AATAGCTTGACCTTAGCTAGAAATTGCTTCCAGTTATATCCAGTGGGAGGTCCATCTCAGTTTTCCACCATTTATTCCCTCAACATGGAACACAATCGAATCAACAAAATCCCATTTGGAATTTTTTCCAGAGCTAAAGTGTTA---AGTAAGCTGAATATGAAG caacagcattttagcaatttgctaaatgaataattttactgctttatcagAGTCTCTTATCTAGTCTTATCAGATTGAAGAACAGCTTGACTCTAGCAAGAACCTGCTTCCACCTATATCTGGTGGGTGGCCCATCCCAGATCACCACAATCTATTCGCTGAATATGGGACACAATCGGATCAACAAAATCCCATTTGATATCTTTTCTAGGACTAAAATCTTAATAAGTGAATTGAATATGAAAgtaaagaaagtgcacatcttaccaatcccatatataacatctctaaatgg Alignment from Exonerate_coding2genome AGTCTTTTATCCAGTCTTGTAAAATTG---AATAGCTTGACCTTAGCTAGAAATTGCTTCCAGTTATATCCAGTGGGAGGTCCATCTCAGTTTTCCACCATTTATTCCCTCAACATGGAACACAATCGAATCAACAAAATCCCATTTGGAATTTTTTCCAGAGCTAAAGTGTTA---AGTAAGCTGAATATGAAG caacagcattttagcaatttgctaaatgaataattttactgctttatcagAGTCTCTTATCTAGTCTTATCAGATTGAAGAACAGCTTGACTCTAGCAAGAACCTGCTTCCACCTATATCTGGTGGGTGGCCCATCCCAGATCACCACAATCTATTCGCTGAATATGGGACACAATCGGATCAACAAAATCCCATTTGATATCTTTTCTAGGACTAAAATCTTAATAAGTGAATTGAATATGAAAgtaaagaaagtgcacatcttaccaatcccatatataacatctctaaatgg Alignment from GeneWise AGTCTTTTATCCAGTCTTGTAAAATTG---AATAGCTTGACCTTAGCTAGAAATTGCTTCCAGTTATATCCAGTGGGAGGTCCATCTCAGTTTTCCACCATTTATTCCCTCAACATGGAACACAATCGAATCAACAAAATCCCATTTGGAATTTTTTCCAGAGCTAAAGTGTTA---AGTAAGCTGAATATGAAG caacagcattttagcaatttgctaaatgaataattttactgctttatcagAGTCTCTTATCTAGTCTTATCAGATTGAAGAACAGCTTGACTCTAGCAAGAACCTGCTTCCACCTATATCTGGTGGGTGGCCCATCCCAGATCACCACAATCTATTCGCTGAATATGGGACACAATCGGATCAACAAAATCCCATTTGATATCTTTTCTAGGACTAAAATCTTAATAAGTGAATTGAATATGAAAgtaaagaaagtgcacatcttaccaatcccatatataacatctctaaatgg #### Shoc2_ID11421_7 --> 0 - 1 Original Alignment AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCg gctattggatatacaccatgtttttttgccccagccccctttctccaaagGAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGGGGTATAGGCCACCTCACTAACCTCACTCACCTTGGTCTAGGTGAGAACCTACTCACTCACCTGCCTGAAGAAATTggtaaggactgggattagactgaataattttgtacatctgacatttaacaa Alignment from CESAR AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCg gctattggatatacaccatgtttttttgccccagccccctttctccaaagGAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGGGGTATAGGCCACCTCACTAACCTCACTCACCTTGGTCTAGGTGAGAACCTACTCACTCACCTGCCTGAAGAAATTggtaaggactgggattagactgaataattttgtacatctgacatttaacaa Alignment from Spaln_aa2Genome AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCG gctattggatatacaccatgtttttttgccccagccccctttctccaaagGAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGGGGTATAGGCCACCTCACTAACCTCACTCACCTTGGTCTAGGTGAGAACCTACTCACTCACCTGCCTGAAGAAATTGgtaaggactgggattagactgaataattttgtacatctgacatttaacaa Alignment from Spaln_nt2Genome AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCG gctattggatatacaccatgtttttttgccccagccccctttctccaaagGAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGGGGTATAGGCCACCTCACTAACCTCACTCACCTTGGTCTAGGTGAGAACCTACTCACTCACCTGCCTGAAGAAATTGgtaaggactgggattagactgaataattttgtacatctgacatttaacaa Alignment from Pairagon AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCG gctattggatatacaccatgtttttttgccccagccccctttctccaaagGAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGGGGTATAGGCCACCTCACTAACCTCACTCACCTTGGTCTAGGTGAGAACCTACTCACTCACCTGCCTGAAGAAATTGgtaaggactgggattagactgaataattttgtacatctgacatttaacaa Alignment from Exonerate_protein2genome AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCG gctattggatatacaccatgtttttttgccccagccccctttctccaaagGAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGGGGTATAGGCCACCTCACTAACCTCACTCACCTTGGTCTAGGTGAGAACCTACTCACTCACCTGCCTGAAGAAATTGgtaaggactgggattagactgaataattttgtacatctgacatttaacaa Alignment from Exonerate_coding2genome AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCG gctattggatatacaccatgtttttttgccccagccccctttctccaaagGAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGGGGTATAGGCCACCTCACTAACCTCACTCACCTTGGTCTAGGTGAGAACCTACTCACTCACCTGCCTGAAGAAATTGgtaaggactgggattagactgaataattttgtacatctgacatttaacaa Alignment from GeneWise AAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCATCGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCACTCACCTTCCTGAGGAAATCG gctattggatatacaccatgtttttttgccccagccccctttctccaaagGAATTAGTCTTAACAAACAACCAGTTAAGCATGCTCCCAAGGGGTATAGGCCACCTCACTAACCTCACTCACCTTGGTCTAGGTGAGAACCTACTCACTCACCTGCCTGAAGAAATTGgtaaggactgggattagactgaataattttgtacatctgacatttaacaa #### Sipa1_ID1139_13 --> 2 - 2 Original Alignment gaCAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTga ggtgatgctgttcattgggctttcgcaattcgtttttttttttctttcagggCAATCAATCTCTGAAAGTGGTGATCTCAAGGAGGCTTCAAAGTGTGATTCTgagtaagtctcttgtgatcatgttgcttaattttctgttgggtgtggcatcc Alignment from CESAR gaCAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTga ggtgatgctgttcattgggctttcgcaattcgtttttttttttctttcagggCAATCAATCTCTGAAAGTGGTGATCTCAAGGAGGCTTCAAAGTGTGATTCTgagtaagtctcttgtgatcatgttgcttaattttctgttgggtgtggcatcc Alignment from Spaln_aa2Genome GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA ggtgatgctgttcattgggctttcgcaattcgtttttttttttctttcagGGCAATCAATCTCTGAAAGTGGTGATCTCAAGGAGGCTTCAAAGTGTGATTCTGAgtaagtctcttgtgatcatgttgcttaattttctgttgggtgtggcatcc Alignment from Spaln_nt2Genome GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA ggtgatgctgttcattgggctttcgcaattcgtttttttttttctttcagGGCAATCAATCTCTGAAAGTGGTGATCTCAAGGAGGCTTCAAAGTGTGATTCTGAgtaagtctcttgtgatcatgttgcttaattttctgttgggtgtggcatcc Alignment from Pairagon GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA ggtgatgctgttcattgggctttcgcaattcgtttttttttttctttcagGGCAATCAATCTCTGAAAGTGGTGATCTCAAGGAGGCTTCAAAGTGTGATTCTGAgtaagtctcttgtgatcatgttgcttaattttctgttgggtgtggcatcc Alignment from Exonerate_protein2genome GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA ggtgatgctgttcattgggctttcgcaattcgtttttttttttctttcagGGCAATCAATCTCTGAAAGTGGTGATCTCAAGGAGGCTTCAAAGTGTGATTCTGAgtaagtctcttgtgatcatgttgcttaattttctgttgggtgtggcatcc Alignment from Exonerate_coding2genome ggtgatgctgttcattgggctttcgcaattcgtttttttttttctttcagggcaatcaatctctgaaagtggtgatctcaaggaggcttcaaagtgtgattctgagtaagtctcttgtgatcatgttgcttaattttctgttgggtgtggcatcc Alignment from GeneWise GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA ggtgatgctgttcattgggctttcgcaattcgtttttttttttctttcagGGCAATCAATCTCTGAAAGTGGTGATCTCAAGGAGGCTTCAAAGTGTGATTCTGAgtaagtctcttgtgatcatgttgcttaattttctgttgggtgtggcatcc #### Sipa1_ID1140_12 --> 2 - 1 Original Alignment ttATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGg taggttgacaccattgtgttcgctcttgacctttgctttctttcttccagttATGCCAGAAGCTGCCACTGAAACATTGGAT---GAATGGCAGTCCATATCTGCAATTTCCTCCACTTGCAACACAATCCTGGAGTCCCTGTCTCGGGAAggtgagttccctgtcttgggaaggtgatgctgttcattgggctttcgcaac Alignment from CESAR ttATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGg taggttgacaccattgtgttcgctcttgacctttgctttctttcttccagttATGCCAGAAGCTGCCACTGAAACATTG---GATGAATGGCAGTCCATATCTGCAATTTCCTCCACTTGCAACACAATCCTGGAGTCCCTGTCTCGGGAAggtgagttccctgtcttgggaaggtgatgctgttcattgggctttcgcaat Alignment from Spaln_aa2Genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG taggttgacaccattgtgttcgctcttgacctttgctttctttcttccagTTATGCCAGAAGCTGCCACTGAAACATTG---GATGAATGGCAGTCCATATCTGCAATTTCCTCCACTTGCAACACAATCCTGGAGTCCCTGTCTCGGGAAGgtgagttccctgtcttgggaaggtgatgctgttcattgggctttcgcaac Alignment from Spaln_nt2Genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG taggttgacaccattgtgttcgctcttgacctttgctttctttcttccagTTATGCCAGAAGCTGCCACTGAAACATT---GGATGAATGGCAGTCCATATCTGCAATTTCCTCCACTTGCAACACAATCCTGGAGTCCCTGTCTCGGGAAGgtgagttccctgtcttgggaaggtgatgctgttcattgggctttcgcaac Alignment from Pairagon TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG taggttgacaccattgtgttcgctcttgacctttgctttctttcttccagTTATGCCAGAAGCTGCCACTGAAACATT---GGATGAATGGCAGTCCATATCTGCAATTTCCTCCACTTGCAACACAATCCTGGAGTCCCTGTCTCGGGAAGgtgagttccctgtcttgggaaggtgatgctgttcattgggctttcgcaac Alignment from Exonerate_protein2genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG taggttgacaccattgtgttcgctcttgacctttgctttctttcttccagTTATGCCAGAAGCTGCCACTGAAACATTG---GATGAATGGCAGTCCATATCTGCAATTTCCTCCACTTGCAACACAATCCTGGAGTCCCTGTCTCGGGAAGgtgagttccctgtcttgggaaggtgatgctgttcattgggctttcgcaac Alignment from Exonerate_coding2genome taggttgacaccattgtgttcgctcttgacctttgctttctttcttccagttatgccagaagctgccactgaaacattggatgaatggcagtccatatctgcaatttcctccacttgcaacacaatcctggagtccctgtctcgggaaggtgagttccctgtcttgggaaggtgatgctgttcattgggctttcgcaac Alignment from GeneWise TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG taggttgacaccattgtgttcgctcttgacctttgctttctttcttccagTTATGCCAGAAGCTGCCACTGAAACATTG---GATGAATGGCAGTCCATATCTGCAATTTCCTCCACTTGCAACACAATCCTGGAGTCCCTGTCTCGGGAAGgtgagttccctgtcttgggaaggtgatgctgttcattgggctttcgcaac #### Sipa1_ID1144_8 --> 0 - 2 Original Alignment CTGGTGAGCCGCGGGTGTGAGACCAGAGAACTAGCGCTGCCCAGAGATGGCCAAGGTCGCCTGGGCTTCGAGGTGGATGCAGAAGGCTTCATCACGCACGTGGAGCGCTTCACGTTTGCGGAGACCACGGGGCTTCGGCCTGGAGCTCGTTTGCTGCGAGTCTGCGGCCAGACGCTGCCCAAGCTG---GGTCCCGAAGCTGCTGCCCAGATGCTGCGCTCTGCGCCCAAGGTCTGCGTCACGGTCCTACCCCCAGACGAGAGCGGCCGGCCGCGAag ccgagagcaacacttatctgtggttacttgacccttttctctgatttcagCTGGTGCGTCGTGGATATGAGACAAGAGAATTGGCATTGCCCAGAGATGGCCAAGGTCATCTGAGCTTTGAGGTAGATGCAGAAGGCTTCATCACACATGTTGAGTGCTTCACCTTTGTTGAAACCACAGGACTCAGGCCTGGAGCGTGCCTGCTCAGAGTCTGTGGCCAGACACTGCCTAAGCTTGTCGGTCCGGAGGCTGCTGCTCAGATGCTACGTTCAGCACCTAAGATTTGCATTATGGTTCTCCCTCAAGATGAGACAAGTCGGCCACGAaggtaagtgactggcttggcattcttcaacaagaccaaaggtggtctaccag Alignment from CESAR CTGGTGAGCCGCGGGTGTGAGACCAGAGAACTAGCGCTGCCCAGAGATGGCCAAGGTCGCCTGGGCTTCGAGGTGGATGCAGAAGGCTTCATCACGCACGTGGAGCGCTTCACGTTTGCGGAGACCACGGGGCTTCGGCCTGGAGCTCGTTTGCTGCGAGTCTGCGGCCAGACGCTGCCCAAGCTG---GGTCCCGAAGCTGCTGCCCAGATGCTGCGCTCTGCGCCCAAGGTCTGCGTCACGGTCCTACCCCCAGACGAGAGCGGCCGGCCGCGAag ccgagagcaacacttatctgtggttacttgacccttttctctgatttcagCTGGTGCGTCGTGGATATGAGACAAGAGAATTGGCATTGCCCAGAGATGGCCAAGGTCATCTGAGCTTTGAGGTAGATGCAGAAGGCTTCATCACACATGTTGAGTGCTTCACCTTTGTTGAAACCACAGGACTCAGGCCTGGAGCGTGCCTGCTCAGAGTCTGTGGCCAGACACTGCCTAAGCTTGTCGGTCCGGAGGCTGCTGCTCAGATGCTACGTTCAGCACCTAAGATTTGCATTATGGTTCTCCCTCAAGATGAGACAAGTCGGCCACGAaggtaagtgactggcttggcattcttcaacaagaccaaaggtggtctaccag Alignment from Spaln_aa2Genome CTGGTGAGCCGCGGGTGTGAGACCAGAGAACTAGCGCTGCCCAGAGATGGCCAAGGTCGCCTGGGCTTCGAGGTGGATGCAGAAGGCTTCATCACGCACGTGGAGCGCTTCACGTTTGCGGAGACCACGGGGCTTCGGCCTGGAGCTCGTTTGCTGCGAGTCTGCGGCCAGACGCTGCCCAAGCTG---GGTCCCGAAGCTGCTGCCCAGATGCTGCGCTCTGCGCCCAAGGTCTGCGTCACGGTCCTACCCCCAGACGAGAGCGGCCGGCCGCGAAG ccgagagcaacacttatctgtggttacttgacccttttctctgatttcagCTGGTGCGTCGTGGATATGAGACAAGAGAATTGGCATTGCCCAGAGATGGCCAAGGTCATCTGAGCTTTGAGGTAGATGCAGAAGGCTTCATCACACATGTTGAGTGCTTCACCTTTGTTGAAACCACAGGACTCAGGCCTGGAGCGTGCCTGCTCAGAGTCTGTGGCCAGACACTGCCTAAGCTTGTCGGTCCGGAGGCTGCTGCTCAGATGCTACGTTCAGCACCTAAGATTTGCATTATGGTTCTCCCTCAAGATGAGACAAGTCGGCCACGAAGgtaagtgactggcttggcattcttcaacaagaccaaaggtggtctaccag Alignment from Spaln_nt2Genome CTGGTGAGCCGCGGGTGTGAGACCAGAGAACTAGCGCTGCCCAGAGATGGCCAAGGTCGCCTGGGCTTCGAGGTGGATGCAGAAGGCTTCATCACGCACGTGGAGCGCTTCACGTTTGCGGAGACCACGGGGCTTCGGCCTGGAGCTCGTTTGCTGCGAGTCTGCGGCCAGACGCTGCCCAAGCTGG---GTCCCGAAGCTGCTGCCCAGATGCTGCGCTCTGCGCCCAAGGTCTGCGTCACGGTCCTACCCCCAGACGAGAGCGGCCGGCCGCGAAG ccgagagcaacacttatctgtggttacttgacccttttctctgatttcagCTGGTGCGTCGTGGATATGAGACAAGAGAATTGGCATTGCCCAGAGATGGCCAAGGTCATCTGAGCTTTGAGGTAGATGCAGAAGGCTTCATCACACATGTTGAGTGCTTCACCTTTGTTGAAACCACAGGACTCAGGCCTGGAGCGTGCCTGCTCAGAGTCTGTGGCCAGACACTGCCTAAGCTTGTCGGTCCGGAGGCTGCTGCTCAGATGCTACGTTCAGCACCTAAGATTTGCATTATGGTTCTCCCTCAAGATGAGACAAGTCGGCCACGAAGgtaagtgactggcttggcattcttcaacaagaccaaaggtggtctaccag Alignment from Pairagon CTGGTGAGCCGCGGGTGTGAGACCAGAGAACTAGCGCTGCCCAGAGATGGCCAAGGTCGCCTGGGCTTCGAGGTGGATGCAGAAGGCTTCATCACGCACGTGGAGCGCTTCACGTTTGCGGAGACCACGGGGCTTCGGCCTGGAGCTCGTTTGCTGCGAGTCTGCGGCCAGACGCTGCCCAAGC---TGGGTCCCGAAGCTGCTGCCCAGATGCTGCGCTCTGCGCCCAAGGTCTGCGTCACGGTCCTACCCCCAGACGAGAGCGGCCGGCCGCGAAG ccgagagcaacacttatctgtggttacttgacccttttctctgatttcagCTGGTGCGTCGTGGATATGAGACAAGAGAATTGGCATTGCCCAGAGATGGCCAAGGTCATCTGAGCTTTGAGGTAGATGCAGAAGGCTTCATCACACATGTTGAGTGCTTCACCTTTGTTGAAACCACAGGACTCAGGCCTGGAGCGTGCCTGCTCAGAGTCTGTGGCCAGACACTGCCTAAGCTTGTCGGTCCGGAGGCTGCTGCTCAGATGCTACGTTCAGCACCTAAGATTTGCATTATGGTTCTCCCTCAAGATGAGACAAGTCGGCCACGAAGgtaagtgactggcttggcattcttcaacaagaccaaaggtggtctaccag Alignment from Exonerate_protein2genome CTGGTGAGCCGCGGGTGTGAGACCAGAGAACTAGCGCTGCCCAGAGATGGCCAAGGTCGCCTGGGCTTCGAGGTGGATGCAGAAGGCTTCATCACGCACGTGGAGCGCTTCACGTTTGCGGAGACCACGGGGCTTCGGCCTGGAGCTCGTTTGCTGCGAGTCTGCGGCCAGACGCTGCCCAAGCTG---GGTCCCGAAGCTGCTGCCCAGATGCTGCGCTCTGCGCCCAAGGTCTGCGTCACGGTCCTACCCCCAGACGAGAGCGGCCGGCCGCGAAG ccgagagcaacacttatctgtggttacttgacccttttctctgatttcagCTGGTGCGTCGTGGATATGAGACAAGAGAATTGGCATTGCCCAGAGATGGCCAAGGTCATCTGAGCTTTGAGGTAGATGCAGAAGGCTTCATCACACATGTTGAGTGCTTCACCTTTGTTGAAACCACAGGACTCAGGCCTGGAGCGTGCCTGCTCAGAGTCTGTGGCCAGACACTGCCTAAGCTTGTCGGTCCGGAGGCTGCTGCTCAGATGCTACGTTCAGCACCTAAGATTTGCATTATGGTTCTCCCTCAAGATGAGACAAGTCGGCCACGAAGgtaagtgactggcttggcattcttcaacaagaccaaaggtggtctaccag Alignment from Exonerate_coding2genome CTGGTGAGCCGCGGGTGTGAGACCAGAGAACTAGCGCTGCCCAGAGATGGCCAAGGTCGCCTGGGCTTCGAGGTGGATGCAGAAGGCTTCATCACGCACGTGGAGCGCTTCACGTTTGCGGAGACCACGGGGCTTCGGCCTGGAGCTCGTTTGCTGCGAGTCTGCGGCCAGACGCTGCCCAAGCTG---GGTCCCGAAGCTGCTGCCCAGATGCTGCGCTCTGCGCCCAAGGTCTGCGTCACGGTCCTACCCCCAGACGAGAGCGGCCGGCCGCGAAG ccgagagcaacacttatctgtggttacttgacccttttctctgatttcagCTGGTGCGTCGTGGATATGAGACAAGAGAATTGGCATTGCCCAGAGATGGCCAAGGTCATCTGAGCTTTGAGGTAGATGCAGAAGGCTTCATCACACATGTTGAGTGCTTCACCTTTGTTGAAACCACAGGACTCAGGCCTGGAGCGTGCCTGCTCAGAGTCTGTGGCCAGACACTGCCTAAGCTTGTCGGTCCGGAGGCTGCTGCTCAGATGCTACGTTCAGCACCTAAGATTTGCATTATGGTTCTCCCTCAAGATGAGACAAGTCGGCCACGAAGgtaagtgactggcttggcattcttcaacaagaccaaaggtggtctaccag Alignment from GeneWise CTGGTGAGCCGCGGGTGTGAGACCAGAGAACTAGCGCTGCCCAGAGATGGCCAAGGTCGCCTGGGCTTCGAGGTGGATGCAGAAGGCTTCATCACGCACGTGGAGCGCTTCACGTTTGCGGAGACCACGGGGCTTCGGCCTGGAGCTCGTTTGCTGCGAGTCTGCGGCCAGACGCTGCCCAAGCTG---GGTCCCGAAGCTGCTGCCCAGATGCTGCGCTCTGCGCCCAAGGTCTGCGTCACGGTCCTACCCCCAGACGAGAGCGGCCGGCCGCGAAG ccgagagcaacacttatctgtggttacttgacccttttctctgatttcagCTGGTGCGTCGTGGATATGAGACAAGAGAATTGGCATTGCCCAGAGATGGCCAAGGTCATCTGAGCTTTGAGGTAGATGCAGAAGGCTTCATCACACATGTTGAGTGCTTCACCTTTGTTGAAACCACAGGACTCAGGCCTGGAGCGTGCCTGCTCAGAGTCTGTGGCCAGACACTGCCTAAGCTTGTCGGTCCGGAGGCTGCTGCTCAGATGCTACGTTCAGCACCTAAGATTTGCATTATGGTTCTCCCTCAAGATGAGACAAGTCGGCCACGAAGgtaagtgactggcttggcattcttcaacaagaccaaaggtggtctaccag #### Sipa1_ID1146_6 --> 0 - 2 Original Alignment CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACag cttgagccactgaaactcaggtatttttacgaactttattttacacttagCTACTAAGGAAATGTCACATCAGTAATGACATTGTGACTATTGTTTTTCAAGAGCCTGGCAGCAAGCCCTTCTGTCCTAAGACAGTATGCTCTCACTTCCCACACGTTTTCTTGGTGGTGCGAGCATATGCATCTTGCACTCCCCACACATCATACaggtaataatttggttaagctggggtctcagggatgggtaagttgtcatggt Alignment from CESAR CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACag cttgagccactgaaactcaggtatttttacgaactttattttacacttagCTACTAAGGAAATGTCACATCAGTAATGACATTGTGACTATTGTTTTTCAAGAGCCTGGCAGCAAGCCCTTCTGTCCTAAGACAGTATGCTCTCACTTCCCACACGTTTTCTTGGTGGTGCGAGCATATGCATCTTGCACTCCCCACACATCATACaggtaataatttggttaagctggggtctcagggatgggtaagttgtcatggt Alignment from Spaln_aa2Genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG cttgagccactgaaactcaggtatttttacgaactttattttacacttagCTACTAAGGAAATGTCACATCAGTAATGACATTGTGACTATTGTTTTTCAAGAGCCTGGCAGCAAGCCCTTCTGTCCTAAGACAGTATGCTCTCACTTCCCACACGTTTTCTTGGTGGTGCGAGCATATGCATCTTGCACTCCCCACACATCATACAGgtaataatttggttaagctggggtctcagggatgggtaagttgtcatggt Alignment from Spaln_nt2Genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG cttgagccactgaaactcaggtatttttacgaactttattttacacttagCTACTAAGGAAATGTCACATCAGTAATGACATTGTGACTATTGTTTTTCAAGAGCCTGGCAGCAAGCCCTTCTGTCCTAAGACAGTATGCTCTCACTTCCCACACGTTTTCTTGGTGGTGCGAGCATATGCATCTTGCACTCCCCACACATCATACAGgtaataatttggttaagctggggtctcagggatgggtaagttgtcatggt Alignment from Pairagon CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG cttgagccactgaaactcaggtatttttacgaactttattttacacttagCTACTAAGGAAATGTCACATCAGTAATGACATTGTGACTATTGTTTTTCAAGAGCCTGGCAGCAAGCCCTTCTGTCCTAAGACAGTATGCTCTCACTTCCCACACGTTTTCTTGGTGGTGCGAGCATATGCATCTTGCACTCCCCACACATCATACAGgtaataatttggttaagctggggtctcagggatgggtaagttgtcatggt Alignment from Exonerate_protein2genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG cttgagccactgaaactcaggtatttttacgaactttattttacacttagCTACTAAGGAAATGTCACATCAGTAATGACATTGTGACTATTGTTTTTCAAGAGCCTGGCAGCAAGCCCTTCTGTCCTAAGACAGTATGCTCTCACTTCCCACACGTTTTCTTGGTGGTGCGAGCATATGCATCTTGCACTCCCCACACATCATACAGgtaataatttggttaagctggggtctcagggatgggtaagttgtcatggt Alignment from Exonerate_coding2genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG cttgagccactgaaactcaggtatttttacgaactttattttacacttagCTACTAAGGAAATGTCACATCAGTAATGACATTGTGACTATTGTTTTTCAAGAGCCTGGCAGCAAGCCCTTCTGTCCTAAGACAGTATGCTCTCACTTCCCACACGTTTTCTTGGTGGTGCGAGCATATGCATCTTGCACTCCCCACACATCATACAGgtaataatttggttaagctggggtctcagggatgggtaagttgtcatggt Alignment from GeneWise CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG cttgagccactgaaactcaggtatttttacgaactttattttacacttagCTACTAAGGAAATGTCACATCAGTAATGACATTGTGACTATTGTTTTTCAAGAGCCTGGCAGCAAGCCCTTCTGTCCTAAGACAGTATGCTCTCACTTCCCACACGTTTTCTTGGTGGTGCGAGCATATGCATCTTGCACTCCCCACACATCATACAGgtaataatttggttaagctggggtctcagggatgggtaagttgtcatggt #### Slc15a3_ID3032_7 --> 2 - 1 Original Alignment gtCTGGAGTTCGCTTACTCAGAAGCCCCACGCTCCATGCAGGGTGCAATTATGGGCATCTTCTTCTGCCTTTCCGGGGTGGGCTCACTGCTAGGCTCTGGCTTGGTGGCCCTACTGTCTTTTCCTGGGGGCTGGATGTACTGCCCCAAGGACTTTg ctgcctgcactctctctagatttcaaggagcctgctgtctctctccacaggaCTTGAGTTCGCTTACTCAGAGGCACCACACTACATGCAAGGTGGTATTATGGGTACATTCTTTTGCCTCTCAGGGGTTGGCTCTCTGGTTGGTTCCGGTTTGGTGGCCTTGCTATCTTTTCCTGGAGGCTGGACATACTGCGCCAAGGACTTTggtgggtgaaagagcttgtctgagagggctctgtattttattcatgttgag Alignment from CESAR gtCTGGAGTTCGCTTACTCAGAAGCCCCACGCTCCATGCAGGGTGCAATTATGGGCATCTTCTTCTGCCTTTCCGGGGTGGGCTCACTGCTAGGCTCTGGCTTGGTGGCCCTACTGTCTTTTCCTGGGGGCTGGATGTACTGCCCCAAGGACTTTg ctgcctgcactctctctagatttcaaggagcctgctgtctctctccacaggaCTTGAGTTCGCTTACTCAGAGGCACCACACTACATGCAAGGTGGTATTATGGGTACATTCTTTTGCCTCTCAGGGGTTGGCTCTCTGGTTGGTTCCGGTTTGGTGGCCTTGCTATCTTTTCCTGGAGGCTGGACATACTGCGCCAAGGACTTTggtgggtgaaagagcttgtctgagagggctctgtattttattcatgttgag Alignment from Spaln_aa2Genome GTCTGGAGTTCGCTTACTCAGAAGCCCCACGCTCCATGCAGGGTGCAATTATGGGCATCTTCTTCTGCCTTTCCGGGGTGGGCTCACTGCTAGGCTCTGGCTTGGTGGCCCTACTGTCTTTTCCTGGGGGCTGGATGTACTGCCCCAAGGACTTTG ctgcctgcactctctctagatttcaaggagcctgctgtctctctccacagGACTTGAGTTCGCTTACTCAGAGGCACCACACTACATGCAAGGTGGTATTATGGGTACATTCTTTTGCCTCTCAGGGGTTGGCTCTCTGGTTGGTTCCGGTTTGGTGGCCTTGCTATCTTTTCCTGGAGGCTGGACATACTGCGCCAAGGACTTTGgtgggtgaaagagcttgtctgagagggctctgtattttattcatgttgag Alignment from Spaln_nt2Genome GTCTGGAGTTCGCTTACTCAGAAGCCCCACGCTCCATGCAGGGTGCAATTATGGGCATCTTCTTCTGCCTTTCCGGGGTGGGCTCACTGCTAGGCTCTGGCTTGGTGGCCCTACTGTCTTTTCCTGGGGGCTGGATGTACTGCCCCAAGGACTTTG ctgcctgcactctctctagatttcaaggagcctgctgtctctctccacagGACTTGAGTTCGCTTACTCAGAGGCACCACACTACATGCAAGGTGGTATTATGGGTACATTCTTTTGCCTCTCAGGGGTTGGCTCTCTGGTTGGTTCCGGTTTGGTGGCCTTGCTATCTTTTCCTGGAGGCTGGACATACTGCGCCAAGGACTTTGgtgggtgaaagagcttgtctgagagggctctgtattttattcatgttgag Alignment from Pairagon GTCTGGAGTTCGCTTACTCAGAAGCCCCACGCTCCATGCAGGGTGCAATTATGGGCATCTTCTTCTGCCTTTCCGGGGTGGGCTCACTGCTAGGCTCTGGCTTGGTGGCCCTACTGTCTTTTCCTGGGGGCTGGATGTACTGCCCCAAGGACTTTG ctgcctgcactctctctagatttcaaggagcctgctgtctctctccacagGACTTGAGTTCGCTTACTCAGAGGCACCACACTACATGCAAGGTGGTATTATGGGTACATTCTTTTGCCTCTCAGGGGTTGGCTCTCTGGTTGGTTCCGGTTTGGTGGCCTTGCTATCTTTTCCTGGAGGCTGGACATACTGCGCCAAGGACTTTGgtgggtgaaagagcttgtctgagagggctctgtattttattcatgttgag Alignment from Exonerate_protein2genome GTCTGGAGTTCGCTTACTCAGAAGCCCCACGCTCCATGCAGGGTGCAATTATGGGCATCTTCTTCTGCCTTTCCGGGGTGGGCTCACTGCTAGGCTCTGGCTTGGTGGCCCTACTGTCTTTTCCTGGGGGCTGGATGTACTGCCCCAAGGACTTTG ctgcctgcactctctctagatttcaaggagcctgctgtctctctccacagGACTTGAGTTCGCTTACTCAGAGGCACCACACTACATGCAAGGTGGTATTATGGGTACATTCTTTTGCCTCTCAGGGGTTGGCTCTCTGGTTGGTTCCGGTTTGGTGGCCTTGCTATCTTTTCCTGGAGGCTGGACATACTGCGCCAAGGACTTTGgtgggtgaaagagcttgtctgagagggctctgtattttattcatgttgag Alignment from Exonerate_coding2genome GTCTGGAGTTCGCTTACTCAGAAGCCCCACGCTCCATGCAGGGTGCAATTATGGGCATCTTCTTCTGCCTTTCCGGGGTGGGCTCACTGCTAGGCTCTGGCTTGGTGGCCCTACTGTCTTTTCCTGGGGGCTGGATGTACTGCCCCAAGGACTTTG ctgcctgcactctctctagatttcaaggagcctgctgtctctctccacagGACTTGAGTTCGCTTACTCAGAGGCACCACACTACATGCAAGGTGGTATTATGGGTACATTCTTTTGCCTCTCAGGGGTTGGCTCTCTGGTTGGTTCCGGTTTGGTGGCCTTGCTATCTTTTCCTGGAGGCTGGACATACTGCGCCAAGGACTTTGgtgggtgaaagagcttgtctgagagggctctgtattttattcatgttgag Alignment from GeneWise GTCTGGAGTTCGCTTACTCAGAAGCCCCACGCTCCATGCAGGGTGCAATTATGGGCATCTTCTTCTGCCTTTCCGGGGTGGGCTCACTGCTAGGCTCTGGCTTGGTGGCCCTACTGTCTTTTCCTGGGGGCTGGATGTACTGCCCCAAGGACTTTG ctgcctgcactctctctagatttcaaggagcctgctgtctctctccacagGACTTGAGTTCGCTTACTCAGAGGCACCACACTACATGCAAGGTGGTATTATGGGTACATTCTTTTGCCTCTCAGGGGTTGGCTCTCTGGTTGGTTCCGGTTTGGTGGCCTTGCTATCTTTTCCTGGAGGCTGGACATACTGCGCCAAGGACTTTGgtgggtgaaagagcttgtctgagagggctctgtattttattcatgttgag #### Slc16a12_ID6973_5 --> 1 - 1 Original Alignment gTGTCTGAAGAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGATGGGCTGTGCTATCTGTGTCTTCCAATGCTTCAAACCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCGGTCGTGACTGCAGAGATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAg agaggcacttgccttgcatagtggcgaggtttttgcttccattgaaacaggTGTCTAAAAAATTACCGGTATGTCTGCTACTTTCTGGCTGTAGCACTAGATGGATTATGCTGTTTGTGTCTTCCTATGCTTCAATCCTTCCTCCTTCTTGTACCATTCTCTTGTACTCTTGGTTATGTCGATGGAGCTTATGTAACTTTGATCCCAGTTGTGACTGCAGAAATAGTAGGGACTACCTCTTTGTCATCAGCACTTGGAGTAGTGTATTTCCTTCATGCAGTACCATACTTAGTGAGTCCACCAATTGCAggtgaggcaaaaaccagattatattgtagttttgtccacattgtgtcacta Alignment from CESAR gTGTCTGAAGAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGATGGGCTGTGCTATCTGTGTCTTCCAATGCTTCAAACCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCGGTCGTGACTGCAGAGATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAg agaggcacttgccttgcatagtggcgaggtttttgcttccattgaaacaggTGTCTAAAAAATTACCGGTATGTCTGCTACTTTCTGGCTGTAGCACTAGATGGATTATGCTGTTTGTGTCTTCCTATGCTTCAATCCTTCCTCCTTCTTGTACCATTCTCTTGTACTCTTGGTTATGTCGATGGAGCTTATGTAACTTTGATCCCAGTTGTGACTGCAGAAATAGTAGGGACTACCTCTTTGTCATCAGCACTTGGAGTAGTGTATTTCCTTCATGCAGTACCATACTTAGTGAGTCCACCAATTGCAggtgaggcaaaaaccagattatattgtagttttgtccacattgtgtcacta Alignment from Spaln_aa2Genome GTGTCTGAAGAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGATGGGCTGTGCTATCTGTGTCTTCCAATGCTTCAAACCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCGGTCGTGACTGCAGAGATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAG agaggcacttgccttgcatagtggcgaggtttttgcttccattgaaacagGTGTCTAAAAAATTACCGGTATGTCTGCTACTTTCTGGCTGTAGCACTAGATGGATTATGCTGTTTGTGTCTTCCTATGCTTCAATCCTTCCTCCTTCTTGTACCATTCTCTTGTACTCTTGGTTATGTCGATGGAGCTTATGTAACTTTGATCCCAGTTGTGACTGCAGAAATAGTAGGGACTACCTCTTTGTCATCAGCACTTGGAGTAGTGTATTTCCTTCATGCAGTACCATACTTAGTGAGTCCACCAATTGCAGgtgaggcaaaaaccagattatattgtagttttgtccacattgtgtcacta Alignment from Spaln_nt2Genome GTGTCTGAAGAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGATGGGCTGTGCTATCTGTGTCTTCCAATGCTTCAAACCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCGGTCGTGACTGCAGAGATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAG agaggcacttgccttgcatagtggcgaggtttttgcttccattgaaacagGTGTCTAAAAAATTACCGGTATGTCTGCTACTTTCTGGCTGTAGCACTAGATGGATTATGCTGTTTGTGTCTTCCTATGCTTCAATCCTTCCTCCTTCTTGTACCATTCTCTTGTACTCTTGGTTATGTCGATGGAGCTTATGTAACTTTGATCCCAGTTGTGACTGCAGAAATAGTAGGGACTACCTCTTTGTCATCAGCACTTGGAGTAGTGTATTTCCTTCATGCAGTACCATACTTAGTGAGTCCACCAATTGCAGgtgaggcaaaaaccagattatattgtagttttgtccacattgtgtcacta Alignment from Pairagon GTGTCTGAAGAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGATGGGCTGTGCTATCTGTGTCTTCCAATGCTTCAAACCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCGGTCGTGACTGCAGAGATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAG agaggcacttgccttgcatagtggcgaggtttttgcttccattgaaacagGTGTCTAAAAAATTACCGGTATGTCTGCTACTTTCTGGCTGTAGCACTAGATGGATTATGCTGTTTGTGTCTTCCTATGCTTCAATCCTTCCTCCTTCTTGTACCATTCTCTTGTACTCTTGGTTATGTCGATGGAGCTTATGTAACTTTGATCCCAGTTGTGACTGCAGAAATAGTAGGGACTACCTCTTTGTCATCAGCACTTGGAGTAGTGTATTTCCTTCATGCAGTACCATACTTAGTGAGTCCACCAATTGCAGgtgaggcaaaaaccagattatattgtagttttgtccacattgtgtcacta Alignment from Exonerate_protein2genome GTGTCTGAAGAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGATGGGCTGTGCTATCTGTGTCTTCCAATGCTTCAAACCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCGGTCGTGACTGCAGAGATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAG agaggcacttgccttgcatagtggcgaggtttttgcttccattgaaacagGTGTCTAAAAAATTACCGGTATGTCTGCTACTTTCTGGCTGTAGCACTAGATGGATTATGCTGTTTGTGTCTTCCTATGCTTCAATCCTTCCTCCTTCTTGTACCATTCTCTTGTACTCTTGGTTATGTCGATGGAGCTTATGTAACTTTGATCCCAGTTGTGACTGCAGAAATAGTAGGGACTACCTCTTTGTCATCAGCACTTGGAGTAGTGTATTTCCTTCATGCAGTACCATACTTAGTGAGTCCACCAATTGCAGgtgaggcaaaaaccagattatattgtagttttgtccacattgtgtcacta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGTCTGAAGAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGATGGGCTGTGCTATCTGTGTCTTCCAATGCTTCAAACCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCGGTCGTGACTGCAGAGATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAG agaggcacttgccttgcatagtggcgaggtttttgcttccattgaaacagGTGTCTAAAAAATTACCGGTATGTCTGCTACTTTCTGGCTGTAGCACTAGATGGATTATGCTGTTTGTGTCTTCCTATGCTTCAATCCTTCCTCCTTCTTGTACCATTCTCTTGTACTCTTGGTTATGTCGATGGAGCTTATGTAACTTTGATCCCAGTTGTGACTGCAGAAATAGTAGGGACTACCTCTTTGTCATCAGCACTTGGAGTAGTGTATTTCCTTCATGCAGTACCATACTTAGTGAGTCCACCAATTGCAGgtgaggcaaaaaccagattatattgtagttttgtccacattgtgtcacta #### Slc18a2_ID12939_7 --> 2 - 0 Original Alignment ctATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA gccaagtatgggatacccatggtatgattgcccattatctccctctccagctATTCAACTCTTTGTAATTCAA---TCCTGCATACTTCCGGATgtaaggagctgggaattcagcctagtgtctttcccgagctatctgccaca Alignment from CESAR ctATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA gccaagtatgggatacccatggtatgattgcccattatctccctctccagctATTCAACTCTTTGTAATTCAA---TCCTGCATACTTCCGGATgtaaggagctgggaattcagcctagtgtctttcccgagctatctgccaca Alignment from Spaln_aa2Genome CTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA gccaagtatgggatacccatggtatgattgcccattatctccctctccagCTATTCAACTCTTTGTAATTCAA---TCCTGCATACTTCCGGATgtaaggagctgggaattcagcctagtgtctttcccgagctatctgccaca Alignment from Spaln_nt2Genome CTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA gccaagtatgggatacccatggtatgattgcccattatctccctctccagCTATTCAACTCTTTGTAATTCA---ATCCTGCATACTTCCGGATgtaaggagctgggaattcagcctagtgtctttcccgagctatctgccaca Alignment from Pairagon CTATTCAGCTCTTT gccaagtatgggatacccatggtatgattgcccattatctccctctccagCTATTCAACTCTTTgtaattcaatcctgcatacttccggatgtaaggagctgggaattcagcctagtgtctttcccgagctatctgccaca Alignment from Exonerate_protein2genome CTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA gccaagtatgggatacccatggtatgattgcccattatctccctctccagCTATTCAACTCTTTGTAATTCAA---TCCTGCATACTTCCGGATgtaaggagctgggaattcagcctagtgtctttcccgagctatctgccaca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise gccaagtatgggatacccatggtatgattgcccattatctccctctccagctattcaactctttgtaattcaatcctgcatacttccggatgtaaggagctgggaattcagcctagtgtctttcccgagctatctgccaca #### Slc18a2_ID12944_11 --> 1 - 0 Original Alignment gTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT atcaactcaattttccctgtctaataagaatcgtttttccttctcatcaggTGGTTGTGTGCCCTTTTGGGAATGACGGTAGTAGGTATCACTATCTTATGTgtaagttacaggggactgtatttcttacatggacaacccttaggattgta Alignment from CESAR gTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT atcaactcaattttccctgtctaataagaatcgtttttccttctcatcaggTGGTTGTGTGCCCTTTTGGGAATGACGGTAGTAGGTATCACTATCTTATGTgtaagttacaggggactgtatttcttacatggacaacccttaggattgta Alignment from Spaln_aa2Genome GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT atcaactcaattttccctgtctaataagaatcgtttttccttctcatcagGTGGTTGTGTGCCCTTTTGGGAATGACGGTAGTAGGTATCACTATCTTATGTgtaagttacaggggactgtatttcttacatggacaacccttaggattgta Alignment from Spaln_nt2Genome GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT atcaactcaattttccctgtctaataagaatcgtttttccttctcatcagGTGGTTGTGTGCCCTTTTGGGAATGACGGTAGTAGGTATCACTATCTTATGTgtaagttacaggggactgtatttcttacatggacaacccttaggattgta Alignment from Pairagon GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT atcaactcaattttccctgtctaataagaatcgtttttccttctcatcagGTGGTTGTGTGCCCTTTTGGGAATGACGGTAGTAGGTATCACTATCTTATGTgtaagttacaggggactgtatttcttacatggacaacccttaggattgta Alignment from Exonerate_protein2genome GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT atcaactcaattttccctgtctaataagaatcgtttttccttctcatcagGTGGTTGTGTGCCCTTTTGGGAATGACGGTAGTAGGTATCACTATCTTATGTgtaagttacaggggactgtatttcttacatggacaacccttaggattgta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGGCTGTGTGCTCTTCTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT atcaactcaattttccctgtctaataagaatcgtttttccttctcatcagGTGGTTGTGTGCCCTTTTGGGAATGACGGTAGTAGGTATCACTATCTTATGTgtaagttacaggggactgtatttcttacatggacaacccttaggattgta #### Slc1a1_ID6162_2 --> 2 - 1 Original Alignment gaATTGTCTTAGGAGTCGTGGTTCGAGGACACAGTGAGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTGATGAGG---ATGCTGAAGCTGGTCATTTTGCCGCTGATCGTATCCAGCATGATCACAg gtgaactgaggtttgggattgttttttcagtgacactgttttctttttaggcATTGTTCTTGGGCTAGTGGTGCGTGGACGTAGTGGG---------CTTGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTTATGAGAAGAATGCTGAAGCTGGTAATCCTACCACTCATCATAGCTAGCAAGATAACAggtatgtgttgtttaccactatgttaccactttggacatgcatagggggct Alignment from CESAR gaATTGTCTTAGGAGTCGTGGTTCGAGGACACAGTGAGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTGATG---AGGATGCTGAAGCTGGTCATTTTGCCGCTGATCGTATCCAGCATGATCACAg gtgaactgaggtttgggattgttttttcagtgacactgttttctttttaggcATTGTTCTTGGGCTAGTGGTGCGTGGACGTAGTGGGCTT---------GATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTTATGAGAAGAATGCTGAAGCTGGTAATCCTACCACTCATCATAGCTAGCAAGATAACAggtatgtgttgtttaccactatgttaccactttggacatgcatagggggct Alignment from Spaln_aa2Genome GAATTGTCTTAGGAGTCGTGGTTCGAGGACACAGTGAGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTGATG---AGGATGCTGAAGCTGGTCATTTTGCCGCTGATCGTATCCAGCATGATCACAG gtgaactgaggtttgggattgttttttcagtgacactgttttctttttagGCATTGTTCTTGGGCTAGTGGTGCGTGGACGTAGTGGG---------CTTGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTTATGAGAAGAATGCTGAAGCTGGTAATCCTACCACTCATCATAGCTAGCAAGATAACAGgtatgtgttgtttaccactatgttaccactttggacatgcatagggggct Alignment from Spaln_nt2Genome GAATTGTCTTAGGAGTCGTGGTTCGAGGACACAGTGAGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTGATGAGGA---TGCTGAAGCTGGTCATTTTGCCGCTGATCGTATCCAGCATGATCACAG gtgaactgaggtttgggattgttttttcagtgacactgttttctttttagGCATTGTTCTTGGGCTAGTGGTGCGTGGACGTAGTGGG---------CTTGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTTATGAGAAGAATGCTGAAGCTGGTAATCCTACCACTCATCATAGCTAGCAAGATAACAGgtatgtgttgtttaccactatgttaccactttggacatgcatagggggct Alignment from Pairagon GTGGTTCGAGGACACAGTGAGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTGATGAGGA---TGCTGAAGCTGGTCATTTTGCCGCTGATCGTATCCAGCATGATCACAG gtgaactgaggtttgggattgttttttcagtgacactgttttctttttaggcattgttcttgggctaGTGGTGCGTGGACGTAGTGGGCTT---------GATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTTATGAGAAGAATGCTGAAGCTGGTAATCCTACCACTCATCATAGCTAGCAAGATAACAGgtatgtgttgtttaccactatgttaccactttggacatgcatagggggct Alignment from Exonerate_protein2genome GAATTGTCTTAGGAGTCGTGGTTCGAGGACACAGTGAGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTGATG---AGGATGCTGAAGCTGGTCATTTTGCCGCTGATCGTATCCAGCATGATCACAG gtgaactgaggtttgggattgttttttcagtgacactgttttctttttagGCATTGTTCTTGGGCTAGTGGTGCGTGGACGT---------AGTGGGCTTGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTTATGAGAAGAATGCTGAAGCTGGTAATCCTACCACTCATCATAGCTAGCAAGATAACAGgtatgtgttgtttaccactatgttaccactttggacatgcatagggggct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAATTGTCTTAGGAGTCGTGGTTCGAGGACACAGTGAGCTCTCAAATCTGGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTGATGAGG---ATGCTGAAGCTGGTCATTTTGCCGCTGATCGTATCCAGCATGATCACAG gtgaactgaggtttgggattgttttttcagtgacactgttttctttttagGCATTGTTCTTGGGCTAGTGGTGCGTGGACGTAGT---------GGGCTTGATAAATTCTACTTTGCTTTTCCTGGGGAAATTCTTATGAGAAGAATGCTGAAGCTGGTAATCCTACCACTCATCATAGCTAGCAAGATAACAGgtatgtgttgtttaccactatgttaccactttggacatgcatagggggct #### Slc1a1_ID6164_3 --> 2 - 1 Original Alignment gtGTCGCTGCACTGGATTCCAATGTGTCTGGGAAGATTGGTCTGCGCGCTGTAGTATATTATTTCTCCACCACCGTCATTGCTGTAATCCTAg gacaacctgtttactgtgagtctcctggagaccccatgtttccttggcaggtGTTGCTGCTCTGGATTCCAACTTGTCTGGGAAGATCGGTGTGCACACTGTAGTATATTATTTCTCCACCACTGTCATTGCTGTCATCTTAggtgggttttacatggtaagaacctgacatgttttacttcaattcgatcct Alignment from CESAR gtGTCGCTGCACTGGATTCCAATGTGTCTGGGAAGATTGGTCTGCGCGCTGTAGTATATTATTTCTCCACCACCGTCATTGCTGTAATCCTAg gacaacctgtttactgtgagtctcctggagaccccatgtttccttggcaggtGTTGCTGCTCTGGATTCCAACTTGTCTGGGAAGATCGGTGTGCACACTGTAGTATATTATTTCTCCACCACTGTCATTGCTGTCATCTTAggtgggttttacatggtaagaacctgacatgttttacttcaattcgatcct Alignment from Spaln_aa2Genome GTGTCGCTGCACTGGATTCCAATGTGTCTGGGAAGATTGGTCTGCGCGCTGTAGTATATTATTTCTCCACCACCGTCATTGCTGTAATCCTAG gacaacctgtttactgtgagtctcctggagaccccatgtttccttggcagGTGTTGCTGCTCTGGATTCCAACTTGTCTGGGAAGATCGGTGTGCACACTGTAGTATATTATTTCTCCACCACTGTCATTGCTGTCATCTTAGgtgggttttacatggtaagaacctgacatgttttacttcaattcgatcct Alignment from Spaln_nt2Genome GTGTCGCTGCACTGGATTCCAATGTGTCTGGGAAGATTGGTCTGCGCGCTGTAGTATATTATTTCTCCACCACCGTCATTGCTGTAATCCTAG gacaacctgtttactgtgagtctcctggagaccccatgtttccttggcagGTGTTGCTGCTCTGGATTCCAACTTGTCTGGGAAGATCGGTGTGCACACTGTAGTATATTATTTCTCCACCACTGTCATTGCTGTCATCTTAGgtgggttttacatggtaagaacctgacatgttttacttcaattcgatcct Alignment from Pairagon GTGTCGCTGCACTGGATTCCAATGTGTCTGGGAAGATTGGTCTGCGCGCTGTAGTATATTATTTCTCCACCACCGTCATTGCTGTAATCCTAG gacaacctgtttactgtgagtctcctggagaccccatgtttccttggcagGTGTTGCTGCTCTGGATTCCAACTTGTCTGGGAAGATCGGTGTGCACACTGTAGTATATTATTTCTCCACCACTGTCATTGCTGTCATCTTAGgtgggttttacatggtaagaacctgacatgttttacttcaattcgatcct Alignment from Exonerate_protein2genome GTGTCGCTGCACTGGATTCCAATGTGTCTGGGAAGATTGGTCTGCGCGCTGTAGTATATTATTTCTCCACCACCGTCATTGCTGTAATCCTAG gacaacctgtttactgtgagtctcctggagaccccatgtttccttggcagGTGTTGCTGCTCTGGATTCCAACTTGTCTGGGAAGATCGGTGTGCACACTGTAGTATATTATTTCTCCACCACTGTCATTGCTGTCATCTTAGgtgggttttacatggtaagaacctgacatgttttacttcaattcgatcct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGTCGCTGCACTGGATTCCAATGTGTCTGGGAAGATTGGTCTGCGCGCTGTAGTATATTATTTCTCCACCACCGTCATTGCTGTAATCCTAG gacaacctgtttactgtgagtctcctggagaccccatgtttccttggcagGTGTTGCTGCTCTGGATTCCAACTTGTCTGGGAAGATCGGTGTGCACACTGTAGTATATTATTTCTCCACCACTGTCATTGCTGTCATCTTAGgtgggttttacatggtaagaacctgacatgttttacttcaattcgatcct #### Slc1a1_ID6170_8 --> 1 - 2 Original Alignment cTACATGCCGATTGGCATTTTGTTCCTAATTGCTGGGAAGATCATAGAAGTTGAAGACTGGGAAATATTCCGCAAGCTGGGCCTTTACATGGCCACTGTCCTGAGCgg aatgtgtaaaccaaagggacctgagaatcctgtgtcatggttgtctccagcTACATGACAATTGGTATTCTGTTCTTGATTGGTGGGAAGATTATAGAAGTTGAAGACTGGGAAATCTTCCGTAAGCTGGGTCTCTACATGGCTACTGTGCTTAGCgggtcagatcccgtgatttaaggggtgtgacaaccacatgtcagatcactat Alignment from CESAR cTACATGCCGATTGGCATTTTGTTCCTAATTGCTGGGAAGATCATAGAAGTTGAAGACTGGGAAATATTCCGCAAGCTGGGCCTTTACATGGCCACTGTCCTGAGCgg aatgtgtaaaccaaagggacctgagaatcctgtgtcatggttgtctccagcTACATGACAATTGGTATTCTGTTCTTGATTGGTGGGAAGATTATAGAAGTTGAAGACTGGGAAATCTTCCGTAAGCTGGGTCTCTACATGGCTACTGTGCTTAGCgggtcagatcccgtgatttaaggggtgtgacaaccacatgtcagatcactat Alignment from Spaln_aa2Genome CTACATGCCGATTGGCATTTTGTTCCTAATTGCTGGGAAGATCATAGAAGTTGAAGACTGGGAAATATTCCGCAAGCTGGGCCTTTACATGGCCACTGTCCTGAGCGG aatgtgtaaaccaaagggacctgagaatcctgtgtcatggttgtctccagCTACATGACAATTGGTATTCTGTTCTTGATTGGTGGGAAGATTATAGAAGTTGAAGACTGGGAAATCTTCCGTAAGCTGGGTCTCTACATGGCTACTGTGCTTAGCGGgtcagatcccgtgatttaaggggtgtgacaaccacatgtcagatcactat Alignment from Spaln_nt2Genome CTACATGCCGATTGGCATTTTGTTCCTAATTGCTGGGAAGATCATAGAAGTTGAAGACTGGGAAATATTCCGCAAGCTGGGCCTTTACATGGCCACTGTCCTGAGCGG aatgtgtaaaccaaagggacctgagaatcctgtgtcatggttgtctccagCTACATGACAATTGGTATTCTGTTCTTGATTGGTGGGAAGATTATAGAAGTTGAAGACTGGGAAATCTTCCGTAAGCTGGGTCTCTACATGGCTACTGTGCTTAGCGGgtcagatcccgtgatttaaggggtgtgacaaccacatgtcagatcactat Alignment from Pairagon CTACATGCCGATTGGCATTTTGTTCCTAATTGCTGGGAAGATCATAGAAGTTGAAGACTGGGAAATATTCCGCAAGCTGGGCCTTTACATGGCCACTGTCCTGAGCGG aatgtgtaaaccaaagggacctgagaatcctgtgtcatggttgtctccagCTACATGACAATTGGTATTCTGTTCTTGATTGGTGGGAAGATTATAGAAGTTGAAGACTGGGAAATCTTCCGTAAGCTGGGTCTCTACATGGCTACTGTGCTTAGCGGgtcagatcccgtgatttaaggggtgtgacaaccacatgtcagatcactat Alignment from Exonerate_protein2genome CTACATGCCGATTGGCATTTTGTTCCTAATTGCTGGGAAGATCATAGAAGTTGAAGACTGGGAAATATTCCGCAAGCTGGGCCTTTACATGGCCACTGTCCTGAGCGG aatgtgtaaaccaaagggacctgagaatcctgtgtcatggttgtctccagCTACATGACAATTGGTATTCTGTTCTTGATTGGTGGGAAGATTATAGAAGTTGAAGACTGGGAAATCTTCCGTAAGCTGGGTCTCTACATGGCTACTGTGCTTAGCGGgtcagatcccgtgatttaaggggtgtgacaaccacatgtcagatcactat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTACATGCCGATTGGCATTTTGTTCCTAATTGCTGGGAAGATCATAGAAGTTGAAGACTGGGAAATATTCCGCAAGCTGGGCCTTTACATGGCCACTGTCCTGAGCGG aatgtgtaaaccaaagggacctgagaatcctgtgtcatggttgtctccagCTACATGACAATTGGTATTCTGTTCTTGATTGGTGGGAAGATTATAGAAGTTGAAGACTGGGAAATCTTCCGTAAGCTGGGTCTCTACATGGCTACTGTGCTTAGCGGgtcagatcccgtgatttaaggggtgtgacaaccacatgtcagatcactat #### Slc1a1_ID6172_9 --> 1 - 2 Original Alignment gCTTGCAATCCACTCCCTCATAGTTCTGCCCCTGCTCTATTTCATAGTTGTGCGGAAGAACCCTTTCCGCTTTGCCTTGGGTATGGCGCAGGCTCTCCTGACAGCTCTCATGATCTCGTCCag tcctacttaaactgtatgcagattggggtttgattttttttttctctcaggCTTGCAATACACTCCCTCATAGTTCTACCCCTGCTCTATTTCATAGTTGTACGGAAGAACCCTTTCCGCTTTGCCTTGGGTATGGCGCAGGCTCTCCTGGCAGCTCTCATGATCTCGTCCaggtgagtatgatagaaggaagggtgtgttgatatcttatatgaatgttccg Alignment from CESAR gCTTGCAATCCACTCCCTCATAGTTCTGCCCCTGCTCTATTTCATAGTTGTGCGGAAGAACCCTTTCCGCTTTGCCTTGGGTATGGCGCAGGCTCTCCTGACAGCTCTCATGATCTCGTCCag tcctacttaaactgtatgcagattggggtttgattttttttttctctcaggCTTGCAATACACTCCCTCATAGTTCTACCCCTGCTCTATTTCATAGTTGTACGGAAGAACCCTTTCCGCTTTGCCTTGGGTATGGCGCAGGCTCTCCTGGCAGCTCTCATGATCTCGTCCaggtgagtatgatagaaggaagggtgtgttgatatcttatatgaatgttccg Alignment from Spaln_aa2Genome GCTTGCAATCCACTCCCTCATAGTTCTGCCCCTGCTCTATTTCATAGTTGTGCGGAAGAACCCTTTCCGCTTTGCCTTGGGTATGGCGCAGGCTCTCCTGACAGCTCTCATGATCTCGTCCAG tcctacttaaactgtatgcagattggggtttgattttttttttctctcagGCTTGCAATACACTCCCTCATAGTTCTACCCCTGCTCTATTTCATAGTTGTACGGAAGAACCCTTTCCGCTTTGCCTTGGGTATGGCGCAGGCTCTCCTGGCAGCTCTCATGATCTCGTCCAGgtgagtatgatagaaggaagggtgtgttgatatcttatatgaatgttccg Alignment from Spaln_nt2Genome GCTTGCAATCCACTCCCTCATAGTTCTGCCCCTGCTCTATTTCATAGTTGTGCGGAAGAACCCTTTCCGCTTTGCCTTGGGTATGGCGCAGGCTCTCCTGACAGCTCTCATGATCTCGTCCAG tcctacttaaactgtatgcagattggggtttgattttttttttctctcagGCTTGCAATACACTCCCTCATAGTTCTACCCCTGCTCTATTTCATAGTTGTACGGAAGAACCCTTTCCGCTTTGCCTTGGGTATGGCGCAGGCTCTCCTGGCAGCTCTCATGATCTCGTCCAGgtgagtatgatagaaggaagggtgtgttgatatcttatatgaatgttccg Alignment from Pairagon GCTTGCAATCCACTCCCTCATAGTTCTGCCCCTGCTCTATTTCATAGTTGTGCGGAAGAACCCTTTCCGCTTTGCCTTGGGTATGGCGCAGGCTCTCCTGACAGCTCTCATGATCTCGTCCAG tcctacttaaactgtatgcagattggggtttgattttttttttctctcagGCTTGCAATACACTCCCTCATAGTTCTACCCCTGCTCTATTTCATAGTTGTACGGAAGAACCCTTTCCGCTTTGCCTTGGGTATGGCGCAGGCTCTCCTGGCAGCTCTCATGATCTCGTCCAGgtgagtatgatagaaggaagggtgtgttgatatcttatatgaatgttccg Alignment from Exonerate_protein2genome GCTTGCAATCCACTCCCTCATAGTTCTGCCCCTGCTCTATTTCATAGTTGTGCGGAAGAACCCTTTCCGCTTTGCCTTGGGTATGGCGCAGGCTCTCCTGACAGCTCTCATGATCTCGTCCAG tcctacttaaactgtatgcagattggggtttgattttttttttctctcagGCTTGCAATACACTCCCTCATAGTTCTACCCCTGCTCTATTTCATAGTTGTACGGAAGAACCCTTTCCGCTTTGCCTTGGGTATGGCGCAGGCTCTCCTGGCAGCTCTCATGATCTCGTCCAGgtgagtatgatagaaggaagggtgtgttgatatcttatatgaatgttccg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCTTGCAATCCACTCCCTCATAGTTCTGCCCCTGCTCTATTTCATAGTTGTGCGGAAGAACCCTTTCCGCTTTGCCTTGGGTATGGCGCAGGCTCTCCTGACAGCTCTCATGATCTCGTCCAG tcctacttaaactgtatgcagattggggtttgattttttttttctctcagGCTTGCAATACACTCCCTCATAGTTCTACCCCTGCTCTATTTCATAGTTGTACGGAAGAACCCTTTCCGCTTTGCCTTGGGTATGGCGCAGGCTCTCCTGGCAGCTCTCATGATCTCGTCCAGgtgagtatgatagaaggaagggtgtgttgatatcttatatgaatgttccg #### Slc1a1_ID6174_11 --> 1 - 2 Original Alignment cATTACAGCCACCGCTGCCAGCATTGGAGCTGCTGGGGTGCCCCAGGCTGGCCTGGTGACCATGGTGATCGTGCTGAGTGCTGTGGGGCTGCCTGCCGAGGACGTCACCCTGATCATTGCTGTTGACTGGCTCct cactgaggactgatgagtttgtctcaccgtaccgcttgtgtttttggcagtACAGCTGTCACTGCAGCAAGCATTGGGGCCACTGGTGTGCCACAGGCTGGCCTAGTCACAATGGTGATTGTGCTCAGTGCAGTGGGGCTACCTGCCGAAGATGTGACCCTGATCATTGCTGTTGACTGGCTTctgtaagttttacaggatggtatgtctccacccagctgttgaaggcaagcac Alignment from CESAR cATTACAGCCACCGCTGCCAGCATTGGAGCTGCTGGGGTGCCCCAGGCTGGCCTGGTGACCATGGTGATCGTGCTGAGTGCTGTGGGGCTGCCTGCCGAGGACGTCACCCTGATCATTGCTGTTGACTGGCTCct cactgaggactgatgagtttgtctcaccgtaccgcttgtgtttttggcagtACAGCTGTCACTGCAGCAAGCATTGGGGCCACTGGTGTGCCACAGGCTGGCCTAGTCACAATGGTGATTGTGCTCAGTGCAGTGGGGCTACCTGCCGAAGATGTGACCCTGATCATTGCTGTTGACTGGCTTctgtaagttttacaggatggtatgtctccacccagctgttgaaggcaagcac Alignment from Spaln_aa2Genome CATTACAGCCACCGCTGCCAGCATTGGAGCTGCTGGGGTGCCCCAGGCTGGCCTGGTGACCATGGTGATCGTGCTGAGTGCTGTGGGGCTGCCTGCCGAGGACGTCACCCTGATCATTGCTGTTGACTGGCTCCT cactgaggactgatgagtttgtctcaccgtaccgcttgtgtttttggcagTACAGCTGTCACTGCAGCAAGCATTGGGGCCACTGGTGTGCCACAGGCTGGCCTAGTCACAATGGTGATTGTGCTCAGTGCAGTGGGGCTACCTGCCGAAGATGTGACCCTGATCATTGCTGTTGACTGGCTTCTgtaagttttacaggatggtatgtctccacccagctgttgaaggcaagcac Alignment from Spaln_nt2Genome CATTACAGCCACCGCTGCCAGCATTGGAGCTGCTGGGGTGCCCCAGGCTGGCCTGGTGACCATGGTGATCGTGCTGAGTGCTGTGGGGCTGCCTGCCGAGGACGTCACCCTGATCATTGCTGTTGACTGGCTCCT cactgaggactgatgagtttgtctcaccgtaccgcttgtgtttttggcagTACAGCTGTCACTGCAGCAAGCATTGGGGCCACTGGTGTGCCACAGGCTGGCCTAGTCACAATGGTGATTGTGCTCAGTGCAGTGGGGCTACCTGCCGAAGATGTGACCCTGATCATTGCTGTTGACTGGCTTCTgtaagttttacaggatggtatgtctccacccagctgttgaaggcaagcac Alignment from Pairagon CATTACAGC---CACCGCTGCCAGCATTGGAGCTGCTGGGGTGCCCCAGGCTGGCCTGGTGACCATGGTGATCGTGCTGAGTGCTGTGGGGCTGCCTGCCGAGGACGTCACCCTGATCATTGCTGTTGACTGGCTCCT cactgaggactgatgagtttgtctcaccgtaccgcttgtgtttttggcag---TACAGCTGTCACTGCAGCAAGCATTGGGGCCACTGGTGTGCCACAGGCTGGCCTAGTCACAATGGTGATTGTGCTCAGTGCAGTGGGGCTACCTGCCGAAGATGTGACCCTGATCATTGCTGTTGACTGGCTTCTgtaagttttacaggatggtatgtctccacccagctgttgaaggcaagcac Alignment from Exonerate_protein2genome CATTACAGCCACCGCTGCCAGCATTGGAGCTGCTGGGGTGCCCCAGGCTGGCCTGGTGACCATGGTGATCGTGCTGAGTGCTGTGGGGCTGCCTGCCGAGGACGTCACCCTGATCATTGCTGTTGACTGGCTCCT cactgaggactgatgagtttgtctcaccgtaccgcttgtgtttttggcagTACAGCTGTCACTGCAGCAAGCATTGGGGCCACTGGTGTGCCACAGGCTGGCCTAGTCACAATGGTGATTGTGCTCAGTGCAGTGGGGCTACCTGCCGAAGATGTGACCCTGATCATTGCTGTTGACTGGCTTCTgtaagttttacaggatggtatgtctccacccagctgttgaaggcaagcac Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CATTACAGCCACCGCTGCCAGCATTGGAGCTGCTGGGGTGCCCCAGGCTGGCCTGGTGACCATGGTGATCGTGCTGAGTGCTGTGGGGCTGCCTGCCGAGGACGTCACCCTGATCATTGCTGTTGACTGGCTCCT cactgaggactgatgagtttgtctcaccgtaccgcttgtgtttttggcagTACAGCTGTCACTGCAGCAAGCATTGGGGCCACTGGTGTGCCACAGGCTGGCCTAGTCACAATGGTGATTGTGCTCAGTGCAGTGGGGCTACCTGCCGAAGATGTGACCCTGATCATTGCTGTTGACTGGCTTCTgtaagttttacaggatggtatgtctccacccagctgttgaaggcaagcac #### Slc22a12_ID1791_6 --> 0 - 2 Original Alignment GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCtg tgggggagaaacttgaagtgaaaattgatggggctgctcctctgtttcagGTCCTATGGTCAGCTATGGACAAAGAACCAAGCAGAGACCAGGCCTGCGCCAGTATTAGCACTTTACTCCACACACCTGGTCTGCGTCACCGTAGTATTATCTCTATGCTGTGTctgtatggtcatcactacaatggtttgcaagcaagagcagttccccagttat Alignment from CESAR GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCtg tgggggagaaacttgaagtgaaaattgatggggctgctcctctgtttcagGTCCTATGGTCAGCTATGGACAAAGAACCAAGCAGAGACCAGGCCTGCGCCAGTATTAGCACTTTACTCCACACACCTGGTCTGCGTCACCGTAGTATTATCTCTATGCTGTGTctgtatggtcatcactacaatggtttgcaagcaagagcagttccccagttat Alignment from Spaln_aa2Genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG tgggggagaaacttgaagtgaaaattgatggggctgctcctctgtttcagGTCCTATGGTCAGCTATGGACAAAGAACCAAGCAGAGACCAGGCCTGCGCCAGTATTAGCACTTTACTCCACACACCTGGTCTGCGTCACCGTAGTATTATCTCTATGCTGTGTCTgtatggtcatcactacaatggtttgcaagcaagagcagttccccagttat Alignment from Spaln_nt2Genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG tgggggagaaacttgaagtgaaaattgatggggctgctcctctgtttcagGTCCTATGGTCAGCTATGGACAAAGAACCAAGCAGAGACCAGGCCTGCGCCAGTATTAGCACTTTACTCCACACACCTGGTCTGCGTCACCGTAGTATTATCTCTATGCTGTGTCTgtatggtcatcactacaatggtttgcaagcaagagcagttccccagttat Alignment from Pairagon GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG tgggggagaaacttgaagtgaaaattgatggggctgctcctctgtttcagGTCCTATGGTCAGCTATGGACAAAGAACCAAGCAGAGACCAGGCCTGCGCCAGTATTAGCACTTTACTCCACACACCTGGTCTGCGTCACCGTAGTATTATCTCTATGCTGTGTCTgtatggtcatcactacaatggtttgcaagcaagagcagttccccagttat Alignment from Exonerate_protein2genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG tgggggagaaacttgaagtgaaaattgatggggctgctcctctgtttcagGTCCTATGGTCAGCTATGGACAAAGAACCAAGCAGAGACCAGGCCTGCGCCAGTATTAGCACTTTACTCCACACACCTGGTCTGCGTCACCGTAGTATTATCTCTATGCTGTGTCTgtatggtcatcactacaatggtttgcaagcaagagcagttccccagttat Alignment from Exonerate_coding2genome tgggggagaaacttgaagtgaaaattgatggggctgctcctctgtttcaggtcctatggtcagctatggacaaagaaccaagcagagaccaggcctgcgccagtattagcactttactccacacacctggtctgcgtcaccgtagtattatctctatgctgtgtctgtatggtcatcactacaatggtttgcaagcaagagcagttccccagttat Alignment from GeneWise GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG tgggggagaaacttgaagtgaaaattgatggggctgctcctctgtttcagGTCCTATGGTCAGCTATGGACAAAGAACCAAGCAGAGACCAGGCCTGCGCCAGTATTAGCACTTTACTCCACACACCTGGTCTGCGTCACCGTAGTATTATCTCTATGCTGTGTCTgtatggtcatcactacaatggtttgcaagcaagagcagttccccagttat #### Slc22a19_ID2204_9 --> 1 - 2 Original Alignment gGCAACTGCTTTAGGAGTCGTTGGAATTGCTGGCAGTGCTGGAGGAGCGCTGTCTCCTCTACTTATGATCCTCACGACATACTCTGCTTCCTTGCCCTGGATCATCTATGGGATTCTTCCCTTCCTTGGTGGCCTCGTTGCCCTTCTTCTTCCTGAGACCAAGAATCAGCCTCTGCCTGACTCAATCCAAGATATAGAAAATaa aagattaaaatttatatgaaaatgctaggtgtctctttcttcttttaaagtGCAACTGCTTTAGGCGTTGTTGGAATTGCCAGGAGTGCTAGTGGGGCACTTTTTCCCCTCCTCATGATCCTCACAACCTACTCTGCTCCATTGCCCTGGATTATCTATGGGATTCTCCCCTTTCTTGGC---CTCATTGCGCTTTTTCTTCCTGGGACAAAGAATCAGCCACTGTCTGAATCAGTCCAAGACAAGGGGAATaagtcagcaatagctctctggtttcaaataaggacctaggctttggtgaatt Alignment from CESAR gGCAACTGCTTTAGGAGTCGTTGGAATTGCTGGCAGTGCTGGAGGAGCGCTGTCTCCTCTACTTATGATCCTCACGACATACTCTGCTTCCTTGCCCTGGATCATCTATGGGATTCTTCCCTTCCTTGGTGGCCTCGTTGCCCTTCTTCTTCCTGAGACCAAGAATCAGCCTCTGCCTGACTCAATCCAAGATATAGAAAATaa aagattaaaatttatatgaaaatgctaggtgtctctttcttcttttaaagtGCAACTGCTTTAGGCGTTGTTGGAATTGCCAGGAGTGCTAGTGGGGCACTTTTTCCCCTCCTCATGATCCTCACAACCTACTCTGCTCCATTGCCCTGGATTATCTATGGGATTCTCCCCTTTCTT---GGCCTCATTGCGCTTTTTCTTCCTGGGACAAAGAATCAGCCACTGTCTGAATCAGTCCAAGACAAGGGGAATaagtcagcaatagctctctggtttcaaataaggacctaggctttggtgaatt Alignment from Spaln_aa2Genome GGCAACTGCTTTAGGAGTCGTTGGAATTGCTGGCAGTGCTGGAGGAGCGCTGTCTCCTCTACTTATGATCCTCACGACATACTCTGCTTCCTTGCCCTGGATCATCTATGGGATTCTTCCCTTCCTTGGTGGCCTCGTTGCCCTTCTTCTTCCTGAGACCAAGAATCAGCCTCTGCCTGACTCAATCCAAGATATAGAAAATAA aagattaaaatttatatgaaaatgctaggtgtctctttcttcttttaaagTGCAACTGCTTTAGGCGTTGTTGGAATTGCCAGGAGTGCTAGTGGGGCACTTTTTCCCCTCCTCATGATCCTCACAACCTACTCTGCTCCATTGCCCTGGATTATCTATGGGATTCTCCCCTTTCTTGGC---CTCATTGCGCTTTTTCTTCCTGGGACAAAGAATCAGCCACTGTCTGAATCAGTCCAAGACAAGGGGAATAAgtcagcaatagctctctggtttcaaataaggacctaggctttggtgaatt Alignment from Spaln_nt2Genome GGCAACTGCTTTAGGAGTCGTTGGAATTGCTGGCAGTGCTGGAGGAGCGCTGTCTCCTCTACTTATGATCCTCACGACATACTCTGCTTCCTTGCCCTGGATCATCTATGGGATTCTTCCCTTCCTTGGTGGCCTCGTTGCCCTTCTTCTTCCTGAGACCAAGAATCAGCCTCTGCCTGACTCAATCCAAGATATAGAAAATAA aagattaaaatttatatgaaaatgctaggtgtctctttcttcttttaaagTGCAACTGCTTTAGGCGTTGTTGGAATTGCCAGGAGTGCTAGTGGGGCACTTTTTCCCCTCCTCATGATCCTCACAACCTACTCTGCTCCATTGCCCTGGATTATCTATGGGATTCTCCCCTTT---CTTGGCCTCATTGCGCTTTTTCTTCCTGGGACAAAGAATCAGCCACTGTCTGAATCAGTCCAAGACAAGGGGAATAAgtcagcaatagctctctggtttcaaataaggacctaggctttggtgaatt Alignment from Pairagon GGCAACTGCTTTAGGAGTCGTTGGAATTGCTGGCAGTGCTGGAGGAGCGCTGTCTCCTCTACTTATGATCCTCACGACATACTCTGCTTCCTTGCCCTGGATCATCTATGGGATTCTTCCCTTCCTTGGTGGCCTCGTTGCCCTTCTTCTTCCTGAGACCAAGAATCAGCCTCTGCCTGACTCAATCCAAGATATAGAAAATAA aagattaaaatttatatgaaaatgctaggtgtctctttcttcttttaaagTGCAACTGCTTTAGGCGTTGTTGGAATTGCCAGGAGTGCTAGTGGGGCACTTTTTCCCCTCCTCATGATCCTCACAACCTACTCTGCTCCATTGCCCTGGATTATCTATGGGATTCTCCCCTTTCT---TGGCCTCATTGCGCTTTTTCTTCCTGGGACAAAGAATCAGCCACTGTCTGAATCAGTCCAAGACAAGGGGAATAAgtcagcaatagctctctggtttcaaataaggacctaggctttggtgaatt Alignment from Exonerate_protein2genome GGCAACTGCTTTAGGAGTCGTTGGAATTGCTGGCAGTGCTGGAGGAGCGCTGTCTCCTCTACTTATGATCCTCACGACATACTCTGCTTCCTTGCCCTGGATCATCTATGGGATTCTTCCCTTCCTTGGTGGCCTCGTTGCCCTTCTTCTTCCTGAGACCAAGAATCAGCCTCTGCCTGACTCAATCCAAGATATAGAAAATAA aagattaaaatttatatgaaaatgctaggtgtctctttcttcttttaaagTGCAACTGCTTTAGGCGTTGTTGGAATTGCCAGGAGTGCTAGTGGGGCACTTTTTCCCCTCCTCATGATCCTCACAACCTACTCTGCTCCATTGCCCTGGATTATCTATGGGATTCTCCCCTTTCTT---GGCCTCATTGCGCTTTTTCTTCCTGGGACAAAGAATCAGCCACTGTCTGAATCAGTCCAAGACAAGGGGAATAAgtcagcaatagctctctggtttcaaataaggacctaggctttggtgaatt Alignment from Exonerate_coding2genome GGCAACTGCTTTAGGAGTCGTTGGAATTGCTGGCAGTGCTGGAGGAGCGCTGTCTCCTCTACTTATGATCCTCACGACATACTCTGCTTCCTTGCCCTGGATCATCTATGGGATTCTTCCCTTCCTTGGTGGCCTCGTTGCCCTTCTTCTTCCTGAGACCAAGAATCAGCCTCTGCCTGACTCAATCCAAGATATAGAAAATAA aagattaaaatttatatgaaaatgctaggtgtctctttcttcttttaaagTGCAACTGCTTTAGGCGTTGTTGGAATTGCCAGGAGTGCTAGTGGGGCACTTTTTCCCCTCCTCATGATCCTCACAACCTACTCTGCTCCATTGCCCTGGATTATCTATGGGATTCTCCCCTTTCTT---GGCCTCATTGCGCTTTTTCTTCCTGGGACAAAGAATCAGCCACTGTCTGAATCAGTCCAAGACAAGGGGAATAAgtcagcaatagctctctggtttcaaataaggacctaggctttggtgaatt Alignment from GeneWise GGCAACTGCTTTAGGAGTCGTTGGAATTGCTGGCAGTGCTGGAGGAGCGCTGTCTCCTCTACTTATGATCCTCACGACATACTCTGCTTCCTTGCCCTGGATCATCTATGGGATTCTTCCCTTCCTTGGTGGCCTCGTTGCCCTTCTTCTTCCTGAGACCAAGAATCAGCCTCTGCCTGACTCAATCCAAGATATAGAAAATAAG aagattaaaatttatatgaaaatgctaggtgtctctttcttcttttaaagTGCAACTGCTTTAGGCGTTGTTGGAATTGCCAGGAGTGCTAGTGGGGCACTTTTTCCCCTCCTCATGATCCTCACAACCTACTCTGCTCCATTGCCCTGGATTATCTATGGGATTCTCCCCTTTCTTGGC---CTCATTGCGCTTTTTCTTCCTGGGACAAAGAATCAGCCACTGTCTGAATCAGTCCAAGACAAGGGGAATAAGtcagcaatagctctctggtttcaaataaggacctaggctttggtgaatt #### Slc22a19_ID2206_7 --> 1 - 1 Original Alignment aTTTGTGTCAGTGATGTCTTTATTGGGCCTGCTTATCAACATCCAATACCTAAGCAATAATGTGTTCCTACTGCAGTGTCTCTATGGTGTGGTGTGCATCCCAGCCAATGTTCTTGGAAATTTTTCAATGAACTACATGGGCCGCAGAATGACGCAACTGATTTTCATGTCTGTGTTGGGAATCTCCATTCTGGCTGTTGTATTTTTGCCTCAAg ccactttgtatttacacattcaatgtgaattacttgtgttttttccctagaTTTGTGTCTGTCATGTCCTTACTAGGTCTCCTTATCAATATTCGACACTTAAGCAATAACGCATTCCTTCTGCAATGCCTGTATGGTGTAGTATGCATCCCATCAAATGTTCTTGGAAACTTTTCGATGAACTATATGGGTGGTAGGATGACACAGCTCATCTTTATGTTTGAGTTGGGAATCTCTATAGTAGCAGTTGTGTTTTTACCTGAAggtgagtggaagaaaagatggcaaggactacaccttcacaacctaaaatga Alignment from CESAR aTTTGTGTCAGTGATGTCTTTATTGGGCCTGCTTATCAACATCCAATACCTAAGCAATAATGTGTTCCTACTGCAGTGTCTCTATGGTGTGGTGTGCATCCCAGCCAATGTTCTTGGAAATTTTTCAATGAACTACATGGGCCGCAGAATGACGCAACTGATTTTCATGTCTGTGTTGGGAATCTCCATTCTGGCTGTTGTATTTTTGCCTCAAg ccactttgtatttacacattcaatgtgaattacttgtgttttttccctagaTTTGTGTCTGTCATGTCCTTACTAGGTCTCCTTATCAATATTCGACACTTAAGCAATAACGCATTCCTTCTGCAATGCCTGTATGGTGTAGTATGCATCCCATCAAATGTTCTTGGAAACTTTTCGATGAACTATATGGGTGGTAGGATGACACAGCTCATCTTTATGTTTGAGTTGGGAATCTCTATAGTAGCAGTTGTGTTTTTACCTGAAggtgagtggaagaaaagatggcaaggactacaccttcacaacctaaaatga Alignment from Spaln_aa2Genome ATTTGTGTCAGTGATGTCTTTATTGGGCCTGCTTATCAACATCCAATACCTAAGCAATAATGTGTTCCTACTGCAGTGTCTCTATGGTGTGGTGTGCATCCCAGCCAATGTTCTTGGAAATTTTTCAATGAACTACATGGGCCGCAGAATGACGCAACTGATTTTCATGTCTGTGTTGGGAATCTCCATTCTGGCTGTTGTATTTTTGCCTCAAG ccactttgtatttacacattcaatgtgaattacttgtgttttttccctagATTTGTGTCTGTCATGTCCTTACTAGGTCTCCTTATCAATATTCGACACTTAAGCAATAACGCATTCCTTCTGCAATGCCTGTATGGTGTAGTATGCATCCCATCAAATGTTCTTGGAAACTTTTCGATGAACTATATGGGTGGTAGGATGACACAGCTCATCTTTATGTTTGAGTTGGGAATCTCTATAGTAGCAGTTGTGTTTTTACCTGAAGgtgagtggaagaaaagatggcaaggactacaccttcacaacctaaaatga Alignment from Spaln_nt2Genome ATTTGTGTCAGTGATGTCTTTATTGGGCCTGCTTATCAACATCCAATACCTAAGCAATAATGTGTTCCTACTGCAGTGTCTCTATGGTGTGGTGTGCATCCCAGCCAATGTTCTTGGAAATTTTTCAATGAACTACATGGGCCGCAGAATGACGCAACTGATTTTCATGTCTGTGTTGGGAATCTCCATTCTGGCTGTTGTATTTTTGCCTCAAG ccactttgtatttacacattcaatgtgaattacttgtgttttttccctagATTTGTGTCTGTCATGTCCTTACTAGGTCTCCTTATCAATATTCGACACTTAAGCAATAACGCATTCCTTCTGCAATGCCTGTATGGTGTAGTATGCATCCCATCAAATGTTCTTGGAAACTTTTCGATGAACTATATGGGTGGTAGGATGACACAGCTCATCTTTATGTTTGAGTTGGGAATCTCTATAGTAGCAGTTGTGTTTTTACCTGAAGgtgagtggaagaaaagatggcaaggactacaccttcacaacctaaaatga Alignment from Pairagon ATTTGTGTCAGTGATGTCTTTATTGGGCCTGCTTATCAACATCCAATACCTAAGCAATAATGTGTTCCTACTGCAGTGTCTCTATGGTGTGGTGTGCATCCCAGCCAATGTTCTTGGAAATTTTTCAATGAACTACATGGGCCGCAGAATGACGCAACTGATTTTCATGTCTGTGTTGGGAATCTCCATTCTGGCTGTTGTATTTTTGCCTCAAG ccactttgtatttacacattcaatgtgaattacttgtgttttttccctagATTTGTGTCTGTCATGTCCTTACTAGGTCTCCTTATCAATATTCGACACTTAAGCAATAACGCATTCCTTCTGCAATGCCTGTATGGTGTAGTATGCATCCCATCAAATGTTCTTGGAAACTTTTCGATGAACTATATGGGTGGTAGGATGACACAGCTCATCTTTATGTTTGAGTTGGGAATCTCTATAGTAGCAGTTGTGTTTTTACCTGAAGgtgagtggaagaaaagatggcaaggactacaccttcacaacctaaaatga Alignment from Exonerate_protein2genome ATTTGTGTCAGTGATGTCTTTATTGGGCCTGCTTATCAACATCCAATACCTAAGCAATAATGTGTTCCTACTGCAGTGTCTCTATGGTGTGGTGTGCATCCCAGCCAATGTTCTTGGAAATTTTTCAATGAACTACATGGGCCGCAGAATGACGCAACTGATTTTCATGTCTGTGTTGGGAATCTCCATTCTGGCTGTTGTATTTTTGCCTCAAG ccactttgtatttacacattcaatgtgaattacttgtgttttttccctagATTTGTGTCTGTCATGTCCTTACTAGGTCTCCTTATCAATATTCGACACTTAAGCAATAACGCATTCCTTCTGCAATGCCTGTATGGTGTAGTATGCATCCCATCAAATGTTCTTGGAAACTTTTCGATGAACTATATGGGTGGTAGGATGACACAGCTCATCTTTATGTTTGAGTTGGGAATCTCTATAGTAGCAGTTGTGTTTTTACCTGAAGgtgagtggaagaaaagatggcaaggactacaccttcacaacctaaaatga Alignment from Exonerate_coding2genome ATTTGTGTCAGTGATGTCTTTATTGGGCCTGCTTATCAACATCCAATACCTAAGCAATAATGTGTTCCTACTGCAGTGTCTCTATGGTGTGGTGTGCATCCCAGCCAATGTTCTTGGAAATTTTTCAATGAACTACATGGGCCGCAGAATGACGCAACTGATTTTCATGTCTGTGTTGGGAATCTCCATTCTGGCTGTTGTATTTTTGCCTCAAG ccactttgtatttacacattcaatgtgaattacttgtgttttttccctagATTTGTGTCTGTCATGTCCTTACTAGGTCTCCTTATCAATATTCGACACTTAAGCAATAACGCATTCCTTCTGCAATGCCTGTATGGTGTAGTATGCATCCCATCAAATGTTCTTGGAAACTTTTCGATGAACTATATGGGTGGTAGGATGACACAGCTCATCTTTATGTTTGAGTTGGGAATCTCTATAGTAGCAGTTGTGTTTTTACCTGAAGgtgagtggaagaaaagatggcaaggactacaccttcacaacctaaaatga Alignment from GeneWise ATTTGTGTCAGTGATGTCTTTATTGGGCCTGCTTATCAACATCCAATACCTAAGCAATAATGTGTTCCTACTGCAGTGTCTCTATGGTGTGGTGTGCATCCCAGCCAATGTTCTTGGAAATTTTTCAATGAACTACATGGGCCGCAGAATGACGCAACTGATTTTCATGTCTGTGTTGGGAATCTCCATTCTGGCTGTTGTATTTTTGCCTCAAG ccactttgtatttacacattcaatgtgaattacttgtgttttttccctagATTTGTGTCTGTCATGTCCTTACTAGGTCTCCTTATCAATATTCGACACTTAAGCAATAACGCATTCCTTCTGCAATGCCTGTATGGTGTAGTATGCATCCCATCAAATGTTCTTGGAAACTTTTCGATGAACTATATGGGTGGTAGGATGACACAGCTCATCTTTATGTTTGAGTTGGGAATCTCTATAGTAGCAGTTGTGTTTTTACCTGAAGgtgagtggaagaaaagatggcaaggactacaccttcacaacctaaaatga #### Slc22a26_ID2220_5 --> 1 - 0 Original Alignment gTGGCTGACAGAATCAGCTCGGTGGCTGATTGTAACCAACAAACCCCAGAAGGCCTTACAGGAACTTAGAAAAGTTGCAAGCAAGAATGGAATAAAGAATTCTGAAGATGTCCTAACCATGGAG tcggcactgctgaatgactgagacatactctatcttttctctgttgttaggTGGTTGACAGAATCAGCTCAGTGGCTAATTGTAACCAATAACCCCCAGAAGGCTACCCAGGAGCTTAAAAAAGTTGCAAGCAAGAATGGAATAAAAAATTCTGAGGACATTTTAACCATGGAAgtaagttgtattgtgaggtaggcgcaagaaatggggtatagaaactttga Alignment from CESAR gTGGCTGACAGAATCAGCTCGGTGGCTGATTGTAACCAACAAACCCCAGAAGGCCTTACAGGAACTTAGAAAAGTTGCAAGCAAGAATGGAATAAAGAATTCTGAAGATGTCCTAACCATGGAG tcggcactgctgaatgactgagacatactctatcttttctctgttgttaggTGGTTGACAGAATCAGCTCAGTGGCTAATTGTAACCAATAACCCCCAGAAGGCTACCCAGGAGCTTAAAAAAGTTGCAAGCAAGAATGGAATAAAAAATTCTGAGGACATTTTAACCATGGAAgtaagttgtattgtgaggtaggcgcaagaaatggggtatagaaactttga Alignment from Spaln_aa2Genome GTGGCTGACAGAATCAGCTCGGTGGCTGATTGTAACCAACAAACCCCAGAAGGCCTTACAGGAACTTAGAAAAGTTGCAAGCAAGAATGGAATAAAGAATTCTGAAGATGTCCTAACCATGGAG tcggcactgctgaatgactgagacatactctatcttttctctgttgttagGTGGTTGACAGAATCAGCTCAGTGGCTAATTGTAACCAATAACCCCCAGAAGGCTACCCAGGAGCTTAAAAAAGTTGCAAGCAAGAATGGAATAAAAAATTCTGAGGACATTTTAACCATGGAAgtaagttgtattgtgaggtaggcgcaagaaatggggtatagaaactttga Alignment from Spaln_nt2Genome GTGGCTGACAGAATCAGCTCGGTGGCTGATTGTAACCAACAAACCCCAGAAGGCCTTACAGGAACTTAGAAAAGTTGCAAGCAAGAATGGAATAAAGAATTCTGAAGATGTCCTAACCATGGAG tcggcactgctgaatgactgagacatactctatcttttctctgttgttagGTGGTTGACAGAATCAGCTCAGTGGCTAATTGTAACCAATAACCCCCAGAAGGCTACCCAGGAGCTTAAAAAAGTTGCAAGCAAGAATGGAATAAAAAATTCTGAGGACATTTTAACCATGGAAgtaagttgtattgtgaggtaggcgcaagaaatggggtatagaaactttga Alignment from Pairagon GTGGCTGACAGAATCAGCTCGGTGGCTGATTGTAACCAACAAACCCCAGAAGGCCTTACAGGAACTTAGAAAAGTTGCAAGCAAGAATGGAATAAAGAATTCTGAAGATGTCCTAACCATGGAG tcggcactgctgaatgactgagacatactctatcttttctctgttgttagGTGGTTGACAGAATCAGCTCAGTGGCTAATTGTAACCAATAACCCCCAGAAGGCTACCCAGGAGCTTAAAAAAGTTGCAAGCAAGAATGGAATAAAAAATTCTGAGGACATTTTAACCATGGAAgtaagttgtattgtgaggtaggcgcaagaaatggggtatagaaactttga Alignment from Exonerate_protein2genome GTGGCTGACAGAATCAGCTCGGTGGCTGATTGTAACCAACAAACCCCAGAAGGCCTTACAGGAACTTAGAAAAGTTGCAAGCAAGAATGGAATAAAGAATTCTGAAGATGTCCTAACCATGGAG tcggcactgctgaatgactgagacatactctatcttttctctgttgttagGTGGTTGACAGAATCAGCTCAGTGGCTAATTGTAACCAATAACCCCCAGAAGGCTACCCAGGAGCTTAAAAAAGTTGCAAGCAAGAATGGAATAAAAAATTCTGAGGACATTTTAACCATGGAAgtaagttgtattgtgaggtaggcgcaagaaatggggtatagaaactttga Alignment from Exonerate_coding2genome GTGGCTGACAGAATCAGCTCGGTGGCTGATTGTAACCAACAAACCCCAGAAGGCCTTACAGGAACTTAGAAAAGTTGCAAGCAAGAATGGAATAAAGAATTCTGAAGATGTCCTAACCATGGAG tcggcactgctgaatgactgagacatactctatcttttctctgttgttagGTGGTTGACAGAATCAGCTCAGTGGCTAATTGTAACCAATAACCCCCAGAAGGCTACCCAGGAGCTTAAAAAAGTTGCAAGCAAGAATGGAATAAAAAATTCTGAGGACATTTTAACCATGGAAgtaagttgtattgtgaggtaggcgcaagaaatggggtatagaaactttga Alignment from GeneWise GTGGCTGACAGAATCAGCTCGGTGGCTGATTGTAACCAACAAACCCCAGAAGGCCTTACAGGAACTTAGAAAAGTTGCAAGCAAGAATGGAATAAAGAATTCTGAAGATGTCCTAACCATGGAG tcggcactgctgaatgactgagacatactctatcttttctctgttgttagGTGGTTGACAGAATCAGCTCAGTGGCTAATTGTAACCAATAACCCCCAGAAGGCTACCCAGGAGCTTAAAAAAGTTGCAAGCAAGAATGGAATAAAAAATTCTGAGGACATTTTAACCATGGAAgtaagttgtattgtgaggtaggcgcaagaaatggggtatagaaactttga #### Slc22a27_ID2230_8 --> 2 - 2 Original Alignment aaATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAag aaaataaccaacctttagctagtaaggcttgcttttgttctttgtttcagaaATGCAGACCCTGCGTATAATTATGGCCACATTGGCAGATGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCACACAAATGAGCTACTTCCAACCACACTAaggtgagtgactcaaaaatggcacctcccacccagccaggaagaccttaaca Alignment from CESAR aaATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAag aaaataaccaacctttagctagtaaggcttgcttttgttctttgtttcagaaATGCAGACCCTGCGTATAATTATGGCCACATTGGCAGATGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCACACAAATGAGCTACTTCCAACCACACTAaggtgagtgactcaaaaatggcacctcccacccagccaggaagaccttaaca Alignment from Spaln_aa2Genome AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAG aaaataaccaacctttagctagtaaggcttgcttttgttctttgtttcagAAATGCAGACCCTGCGTATAATTATGGCCACATTGGCAGATGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCACACAAATGAGCTACTTCCAACCACACTAAGgtgagtgactcaaaaatggcacctcccacccagccaggaagaccttaaca Alignment from Spaln_nt2Genome AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAG aaaataaccaacctttagctagtaaggcttgcttttgttctttgtttcagAAATGCAGACCCTGCGTATAATTATGGCCACATTGGCAGATGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCACACAAATGAGCTACTTCCAACCACACTAAGgtgagtgactcaaaaatggcacctcccacccagccaggaagaccttaaca Alignment from Pairagon AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAG aaaataaccaacctttagctagtaaggcttgcttttgttctttgtttcagAAATGCAGACCCTGCGTATAATTATGGCCACATTGGCAGATGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCACACAAATGAGCTACTTCCAACCACACTAAGgtgagtgactcaaaaatggcacctcccacccagccaggaagaccttaaca Alignment from Exonerate_protein2genome AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAG aaaataaccaacctttagctagtaaggcttgcttttgttctttgtttcagAAATGCAGACCCTGCGTATAATTATGGCCACATTGGCAGATGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCACACAAATGAGCTACTTCCAACCACACTAAGgtgagtgactcaaaaatggcacctcccacccagccaggaagaccttaaca Alignment from Exonerate_coding2genome AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAG aaaataaccaacctttagctagtaaggcttgcttttgttctttgtttcagAAATGCAGACCCTGCGTATAATTATGGCCACATTGGCAGATGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCACACAAATGAGCTACTTCCAACCACACTAAGgtgagtgactcaaaaatggcacctcccacccagccaggaagaccttaaca Alignment from GeneWise AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAG aaaataaccaacctttagctagtaaggcttgcttttgttctttgtttcagAAATGCAGACCCTGCGTATAATTATGGCCACATTGGCAGATGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCACACAAATGAGCTACTTCCAACCACACTAAGgtgagtgactcaaaaatggcacctcccacccagccaggaagaccttaaca #### Slc22a27_ID2232_6 --> 0 - 2 Original Alignment ATTGTGAGAACAAGTATGAAGGCAGAACTTGAGGCAGCAAAGACTAAACCTTCTCTAAGAGATTTGTTCCATACATCTATCCTACGTAAGCGGATATGTGTCCTGTCCTTTATGag gacctgcctgctaagactcttgtccaggagattgtctcgggctccggtagATTGTGAGGACAAGTATGAAAGCAGAGCTAGAAGCAGCACAAACTCAACCCTCTCTAACTGACTTATTCCATACAGCAATCTTACGGAGAAAGATATGTATTCTCTCTCTTATGaggtgagccttaagtattttcatatccaaatttgagatcttcataatttaat Alignment from CESAR ATTGTGAGAACAAGTATGAAGGCAGAACTTGAGGCAGCAAAGACTAAACCTTCTCTAAGAGATTTGTTCCATACATCTATCCTACGTAAGCGGATATGTGTCCTGTCCTTTATGag gacctgcctgctaagactcttgtccaggagattgtctcgggctccggtagATTGTGAGGACAAGTATGAAAGCAGAGCTAGAAGCAGCACAAACTCAACCCTCTCTAACTGACTTATTCCATACAGCAATCTTACGGAGAAAGATATGTATTCTCTCTCTTATGaggtgagccttaagtattttcatatccaaatttgagatcttcataatttaat Alignment from Spaln_aa2Genome ATTGTGAGAACAAGTATGAAGGCAGAACTTGAGGCAGCAAAGACTAAACCTTCTCTAAGAGATTTGTTCCATACATCTATCCTACGTAAGCGGATATGTGTCCTGTCCTTTATGAG gacctgcctgctaagactcttgtccaggagattgtctcgggctccggtagATTGTGAGGACAAGTATGAAAGCAGAGCTAGAAGCAGCACAAACTCAACCCTCTCTAACTGACTTATTCCATACAGCAATCTTACGGAGAAAGATATGTATTCTCTCTCTTATGAGgtgagccttaagtattttcatatccaaatttgagatcttcataatttaat Alignment from Spaln_nt2Genome ATTGTGAGAACAAGTATGAAGGCAGAACTTGAGGCAGCAAAGACTAAACCTTCTCTAAGAGATTTGTTCCATACATCTATCCTACGTAAGCGGATATGTGTCCTGTCCTTTATGAG gacctgcctgctaagactcttgtccaggagattgtctcgggctccggtagATTGTGAGGACAAGTATGAAAGCAGAGCTAGAAGCAGCACAAACTCAACCCTCTCTAACTGACTTATTCCATACAGCAATCTTACGGAGAAAGATATGTATTCTCTCTCTTATGAGgtgagccttaagtattttcatatccaaatttgagatcttcataatttaat Alignment from Pairagon ATTGTGAGAACAAGTATGAAGGCAGAACTTGAGGCAGCAAAGACTAAACCTTCTCTAAGAGATTTGTTCCATACATCTATCCTACGTAAGCGGATATGTGTCCTGTCCTTTATGAG gacctgcctgctaagactcttgtccaggagattgtctcgggctccggtagATTGTGAGGACAAGTATGAAAGCAGAGCTAGAAGCAGCACAAACTCAACCCTCTCTAACTGACTTATTCCATACAGCAATCTTACGGAGAAAGATATGTATTCTCTCTCTTATGAGgtgagccttaagtattttcatatccaaatttgagatcttcataatttaat Alignment from Exonerate_protein2genome ATTGTGAGAACAAGTATGAAGGCAGAACTTGAGGCAGCAAAGACTAAACCTTCTCTAAGAGATTTGTTCCATACATCTATCCTACGTAAGCGGATATGTGTCCTGTCCTTTATGAG gacctgcctgctaagactcttgtccaggagattgtctcgggctccggtagATTGTGAGGACAAGTATGAAAGCAGAGCTAGAAGCAGCACAAACTCAACCCTCTCTAACTGACTTATTCCATACAGCAATCTTACGGAGAAAGATATGTATTCTCTCTCTTATGAGgtgagccttaagtattttcatatccaaatttgagatcttcataatttaat Alignment from Exonerate_coding2genome ATTGTGAGAACAAGTATGAAGGCAGAACTTGAGGCAGCAAAGACTAAACCTTCTCTAAGAGATTTGTTCCATACATCTATCCTACGTAAGCGGATATGTGTCCTGTCCTTTATGAG gacctgcctgctaagactcttgtccaggagattgtctcgggctccggtagATTGTGAGGACAAGTATGAAAGCAGAGCTAGAAGCAGCACAAACTCAACCCTCTCTAACTGACTTATTCCATACAGCAATCTTACGGAGAAAGATATGTATTCTCTCTCTTATGAGgtgagccttaagtattttcatatccaaatttgagatcttcataatttaat Alignment from GeneWise ATTGTGAGAACAAGTATGAAGGCAGAACTTGAGGCAGCAAAGACTAAACCTTCTCTAAGAGATTTGTTCCATACATCTATCCTACGTAAGCGGATATGTGTCCTGTCCTTTATGAG gacctgcctgctaagactcttgtccaggagattgtctcgggctccggtagATTGTGAGGACAAGTATGAAAGCAGAGCTAGAAGCAGCACAAACTCAACCCTCTCTAACTGACTTATTCCATACAGCAATCTTACGGAGAAAGATATGTATTCTCTCTCTTATGAGgtgagccttaagtattttcatatccaaatttgagatcttcataatttaat #### Slc22a27_ID2235_3 --> 1 - 1 Original Alignment gCTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGAAACCTGTGTAGCTTTTGCCCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGATTGTCTGTGGAACCCATATTAGTAAATAGTCACTTGCTCa agtctcaagtgtgcttggttggtaatgtcacaatttgtttcctctctcaggCTGGGCAGGAAACTTATC---TCATGTGCCTTGCTGCAATTTGCTATCGGAGAGACCTGCATTGCTTTTGCACCCTCTTTTTTCATATTCTGCTCACTCCAAATCCCCACTGGATTGTCTGTGGAACCAAAATTAGTAAATAGCCACTTGCTAagtaagtgtaactcagattaacagacacctgtgtgcataggaaattagaca Alignment from CESAR gCTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGAAACCTGTGTAGCTTTTGCCCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGATTGTCTGTGGAACCCATATTAGTAAATAGTCACTTGCTCa agtctcaagtgtgcttggttggtaatgtcacaatttgtttcctctctcaggCTGGGCAGGAAACTTATC---TCATGTGCCTTGCTGCAATTTGCTATCGGAGAGACCTGCATTGCTTTTGCACCCTCTTTTTTCATATTCTGCTCACTCCAAATCCCCACTGGATTGTCTGTGGAACCAAAATTAGTAAATAGCCACTTGCTAagtaagtgtaactcagattaacagacacctgtgtgcataggaaattagaca Alignment from Spaln_aa2Genome GCTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGAAACCTGTGTAGCTTTTGCCCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGATTGTCTGTGGAACCCATATTAGTAAATAGTCACTTGCTCA agtctcaagtgtgcttggttggtaatgtcacaatttgtttcctctctcagGCTGGGCAGGAAACTTATC---TCATGTGCCTTGCTGCAATTTGCTATCGGAGAGACCTGCATTGCTTTTGCACCCTCTTTTTTCATATTCTGCTCACTCCAAATCCCCACTGGATTGTCTGTGGAACCAAAATTAGTAAATAGCCACTTGCTAAgtaagtgtaactcagattaacagacacctgtgtgcataggaaattagaca Alignment from Spaln_nt2Genome GCTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGAAACCTGTGTAGCTTTTGCCCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGATTGTCTGTGGAACCCATATTAGTAAATAGTCACTTGCTCA agtctcaagtgtgcttggttggtaatgtcacaatttgtttcctctctcagGCTGGGCAGGAAACTTATCT---CATGTGCCTTGCTGCAATTTGCTATCGGAGAGACCTGCATTGCTTTTGCACCCTCTTTTTTCATATTCTGCTCACTCCAAATCCCCACTGGATTGTCTGTGGAACCAAAATTAGTAAATAGCCACTTGCTAAgtaagtgtaactcagattaacagacacctgtgtgcataggaaattagaca Alignment from Pairagon GCTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGAAACCTGTGTAGCTTTTGCCCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGATTGTCTGTGGAACCCATATTAGTAAATAGTCACTTGCTCA agtctcaagtgtgcttggttggtaatgtcacaatttgtttcctctctcagGCTGGGCAGGAAACTTATCT---CATGTGCCTTGCTGCAATTTGCTATCGGAGAGACCTGCATTGCTTTTGCACCCTCTTTTTTCATATTCTGCTCACTCCAAATCCCCACTGGATTGTCTGTGGAACCAAAATTAGTAAATAGCCACTTGCTAAgtaagtgtaactcagattaacagacacctgtgtgcataggaaattagaca Alignment from Exonerate_protein2genome GCTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGAAACCTGTGTAGCTTTTGCCCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGATTGTCTGTGGAACCCATATTAGTAAATAGTCACTTGCTCA agtctcaagtgtgcttggttggtaatgtcacaatttgtttcctctctcagGCTGGGCAGGAAA---CTTATCTCATGTGCCTTGCTGCAATTTGCTATCGGAGAGACCTGCATTGCTTTTGCACCCTCTTTTTTCATATTCTGCTCACTCCAAATCCCCACTGGATTGTCTGTGGAACCAAAATTAGTAAATAGCCACTTGCTAAgtaagtgtaactcagattaacagacacctgtgtgcataggaaattagaca Alignment from Exonerate_coding2genome GCTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGAAACCTGTGTAGCTTTTGCCCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGATTGTCTGTGGAACCCATATTAGTAAATAGTCACTTGCTCA agtctcaagtgtgcttggttggtaatgtcacaatttgtttcctctctcagGCTGGGCAGGAAA---CTTATCTCATGTGCCTTGCTGCAATTTGCTATCGGAGAGACCTGCATTGCTTTTGCACCCTCTTTTTTCATATTCTGCTCACTCCAAATCCCCACTGGATTGTCTGTGGAACCAAAATTAGTAAATAGCCACTTGCTAAgtaagtgtaactcagattaacagacacctgtgtgcataggaaattagaca Alignment from GeneWise GCTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGAAACCTGTGTAGCTTTTGCCCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGATTGTCTGTGGAACCCATATTAGTAAATAGTCACTTGCTCA agtctcaagtgtgcttggttggtaatgtcacaatttgtttcctctctcagGCTGGGCAGGAAACTTATC---TCATGTGCCTTGCTGCAATTTGCTATCGGAGAGACCTGCATTGCTTTTGCACCCTCTTTTTTCATATTCTGCTCACTCCAAATCCCCACTGGATTGTCTGTGGAACCAAAATTAGTAAATAGCCACTTGCTAAgtaagtgtaactcagattaacagacacctgtgtgcataggaaattagaca #### Slc22a28_ID2244_7 --> 1 - 1 Original Alignment aTATTTATTTACAGTATCTATTTTTGGCCTATCACTTCACCTCCAACACCTGAGTACTAATATTATCCTGTTGCGGTTTCTCAGTAGTGCATTGGGCATACTAATTAGTGTTATTGGACATTTTGTTCTTAATCACATGGGACGTAGAATAACCCAGCTGGTTCTCATGTCCCTGAGGGGAATCTTCATGTTGACTGCTGTATTTGTACCTCAAg agtcaggagcacctgcaaaacatgtcttttgcttttgttctctcttgtagaTACTTGTTCACAGTGTCTATCTTTGACCTGTCACTTCACCTCCAACATCTTAGTACTAATATTATTCTGTTGCGGTTTCTAAGCAGTGCACTGGGGATTCAAATTAGTGTTATTGGACATTTTGTCCTTAATCACATGGGACGCAAAATAATCGAGTTGGTTCTAATGTCCCTGAGGGGAATTTTCATGTTGACAGCTGTATTTGTGCCTCAAggtaatggcggtagaattaggcatacaaagaaattgagaccccataccaaa Alignment from CESAR aTATTTATTTACAGTATCTATTTTTGGCCTATCACTTCACCTCCAACACCTGAGTACTAATATTATCCTGTTGCGGTTTCTCAGTAGTGCATTGGGCATACTAATTAGTGTTATTGGACATTTTGTTCTTAATCACATGGGACGTAGAATAACCCAGCTGGTTCTCATGTCCCTGAGGGGAATCTTCATGTTGACTGCTGTATTTGTACCTCAAg agtcaggagcacctgcaaaacatgtcttttgcttttgttctctcttgtagaTACTTGTTCACAGTGTCTATCTTTGACCTGTCACTTCACCTCCAACATCTTAGTACTAATATTATTCTGTTGCGGTTTCTAAGCAGTGCACTGGGGATTCAAATTAGTGTTATTGGACATTTTGTCCTTAATCACATGGGACGCAAAATAATCGAGTTGGTTCTAATGTCCCTGAGGGGAATTTTCATGTTGACAGCTGTATTTGTGCCTCAAggtaatggcggtagaattaggcatacaaagaaattgagaccccataccaaa Alignment from Spaln_aa2Genome ATATTTATTTACAGTATCTATTTTTGGCCTATCACTTCACCTCCAACACCTGAGTACTAATATTATCCTGTTGCGGTTTCTCAGTAGTGCATTGGGCATACTAATTAGTGTTATTGGACATTTTGTTCTTAATCACATGGGACGTAGAATAACCCAGCTGGTTCTCATGTCCCTGAGGGGAATCTTCATGTTGACTGCTGTATTTGTACCTCAAG agtcaggagcacctgcaaaacatgtcttttgcttttgttctctcttgtagATACTTGTTCACAGTGTCTATCTTTGACCTGTCACTTCACCTCCAACATCTTAGTACTAATATTATTCTGTTGCGGTTTCTAAGCAGTGCACTGGGGATTCAAATTAGTGTTATTGGACATTTTGTCCTTAATCACATGGGACGCAAAATAATCGAGTTGGTTCTAATGTCCCTGAGGGGAATTTTCATGTTGACAGCTGTATTTGTGCCTCAAGgtaatggcggtagaattaggcatacaaagaaattgagaccccataccaaa Alignment from Spaln_nt2Genome ATATTTATTTACAGTATCTATTTTTGGCCTATCACTTCACCTCCAACACCTGAGTACTAATATTATCCTGTTGCGGTTTCTCAGTAGTGCATTGGGCATACTAATTAGTGTTATTGGACATTTTGTTCTTAATCACATGGGACGTAGAATAACCCAGCTGGTTCTCATGTCCCTGAGGGGAATCTTCATGTTGACTGCTGTATTTGTACCTCAAG agtcaggagcacctgcaaaacatgtcttttgcttttgttctctcttgtagATACTTGTTCACAGTGTCTATCTTTGACCTGTCACTTCACCTCCAACATCTTAGTACTAATATTATTCTGTTGCGGTTTCTAAGCAGTGCACTGGGGATTCAAATTAGTGTTATTGGACATTTTGTCCTTAATCACATGGGACGCAAAATAATCGAGTTGGTTCTAATGTCCCTGAGGGGAATTTTCATGTTGACAGCTGTATTTGTGCCTCAAGgtaatggcggtagaattaggcatacaaagaaattgagaccccataccaaa Alignment from Pairagon ATATTTATTTACAGTATCTATTTTTGGCCTATCACTTCACCTCCAACACCTGAGTACTAATATTATCCTGTTGCGGTTTCTCAGTAGTGCATTGGGCATACTAATTAGTGTTATTGGACATTTTGTTCTTAATCACATGGGACGTAGAATAACCCAGCTGGTTCTCATGTCCCTGAGGGGAATCTTCATGTTGACTGCTGTATTTGTACCTCAAG agtcaggagcacctgcaaaacatgtcttttgcttttgttctctcttgtagATACTTGTTCACAGTGTCTATCTTTGACCTGTCACTTCACCTCCAACATCTTAGTACTAATATTATTCTGTTGCGGTTTCTAAGCAGTGCACTGGGGATTCAAATTAGTGTTATTGGACATTTTGTCCTTAATCACATGGGACGCAAAATAATCGAGTTGGTTCTAATGTCCCTGAGGGGAATTTTCATGTTGACAGCTGTATTTGTGCCTCAAGgtaatggcggtagaattaggcatacaaagaaattgagaccccataccaaa Alignment from Exonerate_protein2genome ATATTTATTTACAGTATCTATTTTTGGCCTATCACTTCACCTCCAACACCTGAGTACTAATATTATCCTGTTGCGGTTTCTCAGTAGTGCATTGGGCATACTAATTAGTGTTATTGGACATTTTGTTCTTAATCACATGGGACGTAGAATAACCCAGCTGGTTCTCATGTCCCTGAGGGGAATCTTCATGTTGACTGCTGTATTTGTACCTCAAG agtcaggagcacctgcaaaacatgtcttttgcttttgttctctcttgtagATACTTGTTCACAGTGTCTATCTTTGACCTGTCACTTCACCTCCAACATCTTAGTACTAATATTATTCTGTTGCGGTTTCTAAGCAGTGCACTGGGGATTCAAATTAGTGTTATTGGACATTTTGTCCTTAATCACATGGGACGCAAAATAATCGAGTTGGTTCTAATGTCCCTGAGGGGAATTTTCATGTTGACAGCTGTATTTGTGCCTCAAGgtaatggcggtagaattaggcatacaaagaaattgagaccccataccaaa Alignment from Exonerate_coding2genome ATATTTATTTACAGTATCTATTTTTGGCCTATCACTTCACCTCCAACACCTGAGTACTAATATTATCCTGTTGCGGTTTCTCAGTAGTGCATTGGGCATACTAATTAGTGTTATTGGACATTTTGTTCTTAATCACATGGGACGTAGAATAACCCAGCTGGTTCTCATGTCCCTGAGGGGAATCTTCATGTTGACTGCTGTATTTGTACCTCAAG agtcaggagcacctgcaaaacatgtcttttgcttttgttctctcttgtagATACTTGTTCACAGTGTCTATCTTTGACCTGTCACTTCACCTCCAACATCTTAGTACTAATATTATTCTGTTGCGGTTTCTAAGCAGTGCACTGGGGATTCAAATTAGTGTTATTGGACATTTTGTCCTTAATCACATGGGACGCAAAATAATCGAGTTGGTTCTAATGTCCCTGAGGGGAATTTTCATGTTGACAGCTGTATTTGTGCCTCAAGgtaatggcggtagaattaggcatacaaagaaattgagaccccataccaaa Alignment from GeneWise ATATTTATTTACAGTATCTATTTTTGGCCTATCACTTCACCTCCAACACCTGAGTACTAATATTATCCTGTTGCGGTTTCTCAGTAGTGCATTGGGCATACTAATTAGTGTTATTGGACATTTTGTTCTTAATCACATGGGACGTAGAATAACCCAGCTGGTTCTCATGTCCCTGAGGGGAATCTTCATGTTGACTGCTGTATTTGTACCTCAAG agtcaggagcacctgcaaaacatgtcttttgcttttgttctctcttgtagATACTTGTTCACAGTGTCTATCTTTGACCTGTCACTTCACCTCCAACATCTTAGTACTAATATTATTCTGTTGCGGTTTCTAAGCAGTGCACTGGGGATTCAAATTAGTGTTATTGGACATTTTGTCCTTAATCACATGGGACGCAAAATAATCGAGTTGGTTCTAATGTCCCTGAGGGGAATTTTCATGTTGACAGCTGTATTTGTGCCTCAAGgtaatggcggtagaattaggcatacaaagaaattgagaccccataccaaa #### Slc22a29_ID2256_7 --> 1 - 1 Original Alignment aCTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAg tgacttgtgtggtttacaatgctgggttgcctccctgcttccttccacagaCTTTTCTTTACAGTATCAATTATTGGCCTAGCAGTTCATCTCCAGCACCTGAGTTCGAATATTATCCTGTTGCAGTTCCTTATTAGTGCATTGGCCATACTAGTCAGCGTTATTGGACCTTTTGTACTTAATCATATTGGCCGTAGAGTAACTTATCTGGTCCTCATGTCCCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAggtgagtatggttgcactcacatgagcatgatgacaacagatggcacaaca Alignment from CESAR aCTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAg tgacttgtgtggtttacaatgctgggttgcctccctgcttccttccacagaCTTTTCTTTACAGTATCAATTATTGGCCTAGCAGTTCATCTCCAGCACCTGAGTTCGAATATTATCCTGTTGCAGTTCCTTATTAGTGCATTGGCCATACTAGTCAGCGTTATTGGACCTTTTGTACTTAATCATATTGGCCGTAGAGTAACTTATCTGGTCCTCATGTCCCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAggtgagtatggttgcactcacatgagcatgatgacaacagatggcacaaca Alignment from Spaln_aa2Genome ACTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAG tgacttgtgtggtttacaatgctgggttgcctccctgcttccttccacagACTTTTCTTTACAGTATCAATTATTGGCCTAGCAGTTCATCTCCAGCACCTGAGTTCGAATATTATCCTGTTGCAGTTCCTTATTAGTGCATTGGCCATACTAGTCAGCGTTATTGGACCTTTTGTACTTAATCATATTGGCCGTAGAGTAACTTATCTGGTCCTCATGTCCCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAGgtgagtatggttgcactcacatgagcatgatgacaacagatggcacaaca Alignment from Spaln_nt2Genome ACTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAG tgacttgtgtggtttacaatgctgggttgcctccctgcttccttccacagACTTTTCTTTACAGTATCAATTATTGGCCTAGCAGTTCATCTCCAGCACCTGAGTTCGAATATTATCCTGTTGCAGTTCCTTATTAGTGCATTGGCCATACTAGTCAGCGTTATTGGACCTTTTGTACTTAATCATATTGGCCGTAGAGTAACTTATCTGGTCCTCATGTCCCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAGgtgagtatggttgcactcacatgagcatgatgacaacagatggcacaaca Alignment from Pairagon ACTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAG tgacttgtgtggtttacaatgctgggttgcctccctgcttccttccacagACTTTTCTTTACAGTATCAATTATTGGCCTAGCAGTTCATCTCCAGCACCTGAGTTCGAATATTATCCTGTTGCAGTTCCTTATTAGTGCATTGGCCATACTAGTCAGCGTTATTGGACCTTTTGTACTTAATCATATTGGCCGTAGAGTAACTTATCTGGTCCTCATGTCCCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAGgtgagtatggttgcactcacatgagcatgatgacaacagatggcacaaca Alignment from Exonerate_protein2genome ACTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAG tgacttgtgtggtttacaatgctgggttgcctccctgcttccttccacagACTTTTCTTTACAGTATCAATTATTGGCCTAGCAGTTCATCTCCAGCACCTGAGTTCGAATATTATCCTGTTGCAGTTCCTTATTAGTGCATTGGCCATACTAGTCAGCGTTATTGGACCTTTTGTACTTAATCATATTGGCCGTAGAGTAACTTATCTGGTCCTCATGTCCCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAGgtgagtatggttgcactcacatgagcatgatgacaacagatggcacaaca Alignment from Exonerate_coding2genome ACTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAG tgacttgtgtggtttacaatgctgggttgcctccctgcttccttccacagACTTTTCTTTACAGTATCAATTATTGGCCTAGCAGTTCATCTCCAGCACCTGAGTTCGAATATTATCCTGTTGCAGTTCCTTATTAGTGCATTGGCCATACTAGTCAGCGTTATTGGACCTTTTGTACTTAATCATATTGGCCGTAGAGTAACTTATCTGGTCCTCATGTCCCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAGgtgagtatggttgcactcacatgagcatgatgacaacagatggcacaaca Alignment from GeneWise ACTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAG tgacttgtgtggtttacaatgctgggttgcctccctgcttccttccacagACTTTTCTTTACAGTATCAATTATTGGCCTAGCAGTTCATCTCCAGCACCTGAGTTCGAATATTATCCTGTTGCAGTTCCTTATTAGTGCATTGGCCATACTAGTCAGCGTTATTGGACCTTTTGTACTTAATCATATTGGCCGTAGAGTAACTTATCTGGTCCTCATGTCCCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAGgtgagtatggttgcactcacatgagcatgatgacaacagatggcacaaca #### Slc22a29_ID2259_4 --> 2 - 2 Original Alignment tgTTAGAATGGACAAGCCCTAAATTCCTAGCCATGATGGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGACTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGCGCCAATATTCTTCTTCCTTATACTCACAag ggagtgcttaggtcttgaatttcttcaaaaatgtctttgcatttcttcagtgTTAGAGTGGACAAGCCCTAAATTCCTAGCCATGATAGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGATTAGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAACAATGTCTGCACCAATATTCTTTTTCCTTATACTCACAaggtgagtgcaatccctactatgtgacatcagtgtgtgaagttagtcattta Alignment from CESAR tgTTAGAATGGACAAGCCCTAAATTCCTAGCCATGATGGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGACTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGCGCCAATATTCTTCTTCCTTATACTCACAag ggagtgcttaggtcttgaatttcttcaaaaatgtctttgcatttcttcagtgTTAGAGTGGACAAGCCCTAAATTCCTAGCCATGATAGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGATTAGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAACAATGTCTGCACCAATATTCTTTTTCCTTATACTCACAaggtgagtgcaatccctactatgtgacatcagtgtgtgaagttagtcattta Alignment from Spaln_aa2Genome TGTTAGAATGGACAAGCCCTAAATTCCTAGCCATGATGGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGACTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGCGCCAATATTCTTCTTCCTTATACTCACAAG ggagtgcttaggtcttgaatttcttcaaaaatgtctttgcatttcttcagTGTTAGAGTGGACAAGCCCTAAATTCCTAGCCATGATAGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGATTAGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAACAATGTCTGCACCAATATTCTTTTTCCTTATACTCACAAGgtgagtgcaatccctactatgtgacatcagtgtgtgaagttagtcattta Alignment from Spaln_nt2Genome TGTTAGAATGGACAAGCCCTAAATTCCTAGCCATGATGGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGACTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGCGCCAATATTCTTCTTCCTTATACTCACAAG ggagtgcttaggtcttgaatttcttcaaaaatgtctttgcatttcttcagTGTTAGAGTGGACAAGCCCTAAATTCCTAGCCATGATAGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGATTAGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAACAATGTCTGCACCAATATTCTTTTTCCTTATACTCACAAGgtgagtgcaatccctactatgtgacatcagtgtgtgaagttagtcattta Alignment from Pairagon TGTTAGAATGGACAAGCCCTAAATTCCTAGCCATGATGGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGACTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGCGCCAATATTCTTCTTCCTTATACTCACAAG ggagtgcttaggtcttgaatttcttcaaaaatgtctttgcatttcttcagTGTTAGAGTGGACAAGCCCTAAATTCCTAGCCATGATAGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGATTAGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAACAATGTCTGCACCAATATTCTTTTTCCTTATACTCACAAGgtgagtgcaatccctactatgtgacatcagtgtgtgaagttagtcattta Alignment from Exonerate_protein2genome TGTTAGAATGGACAAGCCCTAAATTCCTAGCCATGATGGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGACTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGCGCCAATATTCTTCTTCCTTATACTCACAAG ggagtgcttaggtcttgaatttcttcaaaaatgtctttgcatttcttcagTGTTAGAGTGGACAAGCCCTAAATTCCTAGCCATGATAGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGATTAGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAACAATGTCTGCACCAATATTCTTTTTCCTTATACTCACAAGgtgagtgcaatccctactatgtgacatcagtgtgtgaagttagtcattta Alignment from Exonerate_coding2genome TGTTAGAATGGACAAGCCCTAAATTCCTAGCCATGATGGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGACTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGCGCCAATATTCTTCTTCCTTATACTCACAAG ggagtgcttaggtcttgaatttcttcaaaaatgtctttgcatttcttcagTGTTAGAGTGGACAAGCCCTAAATTCCTAGCCATGATAGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGATTAGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAACAATGTCTGCACCAATATTCTTTTTCCTTATACTCACAAGgtgagtgcaatccctactatgtgacatcagtgtgtgaagttagtcattta Alignment from GeneWise TGTTAGAATGGACAAGCCCTAAATTCCTAGCCATGATGGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGACTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGCGCCAATATTCTTCTTCCTTATACTCACAAG ggagtgcttaggtcttgaatttcttcaaaaatgtctttgcatttcttcagTGTTAGAGTGGACAAGCCCTAAATTCCTAGCCATGATAGCAGTGCTTTCATCTTGTGCTCCTAATATTGGATTCATGATATTGGCAGGATTAGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAACAATGTCTGCACCAATATTCTTTTTCCTTATACTCACAAGgtgagtgcaatccctactatgtgacatcagtgtgtgaagttagtcattta #### Slc22a29_ID2260_3 --> 1 - 1 Original Alignment gTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTCACTTGCTCa aatccaacttgtggtggtttaggccactacaccttgtcatgttcctacagaTTTGGGAGGCAGTTCACCCTAACATGTGCCTTATTACAATTTGCAATTACTGAAATCTGCATAGCCTTTGCACCTTCCTTTTTTATTTACTGCTCACTACGATGTCTGGCTGGAATGTCTGCAGAACCCATATCTGTGAATAGTTACTTGCTGagtgagtaagcaaatcgtcctggggcaggagtgcttaggtcttgaatttct Alignment from CESAR gTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTCACTTGCTCa aatccaacttgtggtggtttaggccactacaccttgtcatgttcctacagaTTTGGGAGGCAGTTCACCCTAACATGTGCCTTATTACAATTTGCAATTACTGAAATCTGCATAGCCTTTGCACCTTCCTTTTTTATTTACTGCTCACTACGATGTCTGGCTGGAATGTCTGCAGAACCCATATCTGTGAATAGTTACTTGCTGagtgagtaagcaaatcgtcctggggcaggagtgcttaggtcttgaatttct Alignment from Spaln_aa2Genome GTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTCACTTGCTCA aatccaacttgtggtggtttaggccactacaccttgtcatgttcctacagATTTGGGAGGCAGTTCACCCTAACATGTGCCTTATTACAATTTGCAATTACTGAAATCTGCATAGCCTTTGCACCTTCCTTTTTTATTTACTGCTCACTACGATGTCTGGCTGGAATGTCTGCAGAACCCATATCTGTGAATAGTTACTTGCTGAgtgagtaagcaaatcgtcctggggcaggagtgcttaggtcttgaatttct Alignment from Spaln_nt2Genome GTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTCACTTGCTCA aatccaacttgtggtggtttaggccactacaccttgtcatgttcctacagATTTGGGAGGCAGTTCACCCTAACATGTGCCTTATTACAATTTGCAATTACTGAAATCTGCATAGCCTTTGCACCTTCCTTTTTTATTTACTGCTCACTACGATGTCTGGCTGGAATGTCTGCAGAACCCATATCTGTGAATAGTTACTTGCTGAgtgagtaagcaaatcgtcctggggcaggagtgcttaggtcttgaatttct Alignment from Pairagon GTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTCACTTGCTCA aatccaacttgtggtggtttaggccactacaccttgtcatgttcctacagATTTGGGAGGCAGTTCACCCTAACATGTGCCTTATTACAATTTGCAATTACTGAAATCTGCATAGCCTTTGCACCTTCCTTTTTTATTTACTGCTCACTACGATGTCTGGCTGGAATGTCTGCAGAACCCATATCTGTGAATAGTTACTTGCTGAgtgagtaagcaaatcgtcctggggcaggagtgcttaggtcttgaatttct Alignment from Exonerate_protein2genome GTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTCACTTGCTCA aatccaacttgtggtggtttaggccactacaccttgtcatgttcctacagATTTGGGAGGCAGTTCACCCTAACATGTGCCTTATTACAATTTGCAATTACTGAAATCTGCATAGCCTTTGCACCTTCCTTTTTTATTTACTGCTCACTACGATGTCTGGCTGGAATGTCTGCAGAACCCATATCTGTGAATAGTTACTTGCTGAgtgagtaagcaaatcgtcctggggcaggagtgcttaggtcttgaatttct Alignment from Exonerate_coding2genome GTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTCACTTGCTCA aatccaacttgtggtggtttaggccactacaccttgtcatgttcctacagATTTGGGAGGCAGTTCACCCTAACATGTGCCTTATTACAATTTGCAATTACTGAAATCTGCATAGCCTTTGCACCTTCCTTTTTTATTTACTGCTCACTACGATGTCTGGCTGGAATGTCTGCAGAACCCATATCTGTGAATAGTTACTTGCTGAgtgagtaagcaaatcgtcctggggcaggagtgcttaggtcttgaatttct Alignment from GeneWise GTTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGAAACCTGTGTAGCTTTTGCTCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGAATGTCTGTGGAACCCATATCAGTAAATAGTCACTTGCTCA aatccaacttgtggtggtttaggccactacaccttgtcatgttcctacagATTTGGGAGGCAGTTCACCCTAACATGTGCCTTATTACAATTTGCAATTACTGAAATCTGCATAGCCTTTGCACCTTCCTTTTTTATTTACTGCTCACTACGATGTCTGGCTGGAATGTCTGCAGAACCCATATCTGTGAATAGTTACTTGCTGAgtgagtaagcaaatcgtcctggggcaggagtgcttaggtcttgaatttct #### Slc22a29_ID2261_2 --> 0 - 2 Original Alignment TGGGACTTGGTATGTGAATCTCAGGCACTGAATTCTGTCACTAAATTTTCATTCATGATTGGCCTATTTATAGGGGGTATCATATGTGGCCATCTGTCAGACag cagacaccgatttgggctatttctaaccggctccatgctgtcccatgcagTGGGACTTGGTATGTGAATCCCAGGCCGTGAATTCTGTCCCAAAGTCTTCATTCATGATTGGAGTATTCATAGGGGGTATA---TGTGGGCATCTGTCAGACaggtaagcatgtgaagaatccatactctgtcttcctggtctctatttagagc Alignment from CESAR TGGGACTTGGTATGTGAATCTCAGGCACTGAATTCTGTCACTAAATTTTCATTCATGATTGGCCTATTTATAGGGGGTATCATATGTGGCCATCTGTCAGACag cagacaccgatttgggctatttctaaccggctccatgctgtcccatgcagTGGGACTTGGTATGTGAATCCCAGGCCGTGAATTCTGTCCCAAAGTCTTCATTCATGATTGGAGTATTCATAGGGGGT---ATATGTGGGCATCTGTCAGACaggtaagcatgtgaagaatccatactctgtcttcctggtctctatttagagc Alignment from Spaln_aa2Genome TGGGACTTGGTATGTGAATCTCAGGCACTGAATTCTGTCACTAAATTTTCATTCATGATTGGCCTATTTATAGGGGGTATCATATGTGGCCATCTGTCAGACAG cagacaccgatttgggctatttctaaccggctccatgctgtcccatgcagTGGGACTTGGTATGTGAATCCCAGGCCGTGAATTCTGTCCCAAAGTCTTCATTCATGATTGGAGTATTCATAGGGGGT---ATATGTGGGCATCTGTCAGACAGgtaagcatgtgaagaatccatactctgtcttcctggtctctatttagagc Alignment from Spaln_nt2Genome TGGGACTTGGTATGTGAATCTCAGGCACTGAATTCTGTCACTAAATTTTCATTCATGATTGGCCTATTTATAGGGGGTATCATATGTGGCCATCTGTCAGACAG cagacaccgatttgggctatttctaaccggctccatgctgtcccatgcagTGGGACTTGGTATGTGAATCCCAGGCCGTGAATTCTGTCCCAAAGTCTTCATTCATGATTGGAGTATTCATAGGGGGTAT---ATGTGGGCATCTGTCAGACAGgtaagcatgtgaagaatccatactctgtcttcctggtctctatttagagc Alignment from Pairagon TGGGACTTGGTATGTGAATCTCAGGCACTGAATTCTGTCACTAAATTTTCATTCATGATTGGCCTATTTATAGGGGGTATCATATGTGGCCATCTGTCAGACAG cagacaccgatttgggctatttctaaccggctccatgctgtcccatgcagTGGGACTTGGTATGTGAATCCCAGGCCGTGAATTCTGTCCCAAAGTCTTCATTCATGATTGGAGTATTCATAGGGGGT---ATATGTGGGCATCTGTCAGACAGgtaagcatgtgaagaatccatactctgtcttcctggtctctatttagagc Alignment from Exonerate_protein2genome TGGGACTTGGTATGTGAATCTCAGGCACTGAATTCTGTCACTAAATTTTCATTCATGATTGGCCTATTTATAGGGGGTATCATATGTGGCCATCTGTCAGACAG cagacaccgatttgggctatttctaaccggctccatgctgtcccatgcagTGGGACTTGGTATGTGAATCCCAGGCCGTGAATTCTGTCCCAAAGTCTTCATTCATGATTGGAGTATTCATAGGGGGT---ATATGTGGGCATCTGTCAGACAGgtaagcatgtgaagaatccatactctgtcttcctggtctctatttagagc Alignment from Exonerate_coding2genome TGGGACTTGGTATGTGAATCTCAGGCACTGAATTCTGTCACTAAATTTTCATTCATGATTGGCCTATTTATAGGGGGTATCATATGTGGCCATCTGTCAGACAG cagacaccgatttgggctatttctaaccggctccatgctgtcccatgcagTGGGACTTGGTATGTGAATCCCAGGCCGTGAATTCTGTCCCAAAGTCTTCATTCATGATTGGAGTATTCATAGGGGGT---ATATGTGGGCATCTGTCAGACAGgtaagcatgtgaagaatccatactctgtcttcctggtctctatttagagc Alignment from GeneWise TGGGACTTGGTATGTGAATCTCAGGCACTGAATTCTGTCACTAAATTTTCATTCATGATTGGCCTATTTATAGGGGGTATCATATGTGGCCATCTGTCAGACAG cagacaccgatttgggctatttctaaccggctccatgctgtcccatgcagTGGGACTTGGTATGTGAATCCCAGGCCGTGAATTCTGTCCCAAAGTCTTCATTCATGATTGGAGTATTCATAGGGGGTATA---TGTGGGCATCTGTCAGACAGgtaagcatgtgaagaatccatactctgtcttcctggtctctatttagagc #### Slc22a6_ID2281_2 --> 0 - 2 Original Alignment TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATG---ATGTTTGGCTACCTGGCGGACag gctactaaaattgacatatttcagtgcagagttatgtttgttctgcccagTGGAACCTT---TGCTCCCATAGAGCCTTTCACCGATTGGCCCAGTCACTGTTCATGGTAGGAGTG---TTTGGTGCCATGATGTTGTTTGGTTACCTTTCAGATaggttggctaacaagtattcatgcacggggtagatgaacccattatagccca Alignment from CESAR TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATG---TTTGGCTACCTGGCGGACag gctactaaaattgacatatttcagtgcagagttatgtttgttctgcccagTGGAACCTT---TGCTCCCATAGAGCCTTTCACCGATTGGCCCAGTCACTGTTCATGGTAGGAGTGTTT---GGTGCCATGATGTTGTTTGGTTACCTTTCAGATaggttggctaacaagtattcatgcacggggtagatgaacccattatagccca Alignment from Spaln_aa2Genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG gctactaaaattgacatatttcagtgcagagttatgtttgttctgcccagTGGAACCTT---TGCTCCCATAGAGCCTTTCACCGATTGGCCCAGTCACTGTTCATGGTAGGAGTGTTTGGTGCCATGATGTTGTTTGGTTACCTTTCAGATAGgttggctaacaagtattcatgcacggggtagatgaacccattatagccca Alignment from Spaln_nt2Genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTT---TGGCTACCTGGCGGACAG gctactaaaattgacatatttcagtgcagagttatgtttgttctgcccagTGGAACCTT---TGCTCCCATAGAGCCTTTCACCGATTGGCCCAGTCACTGTTCATGGTAGGAGTGT---TTGGTGCCATGATGTTGTTTGGTTACCTTTCAGATAGgttggctaacaagtattcatgcacggggtagatgaacccattatagccca Alignment from Pairagon TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGA---TGTTTGGCTACCTGGCGGACAG gctactaaaattgacatatttcagtgcagagttatgtttgttctgcccagTGGAACCTT---TGCTCCCATAGAGCCTTTCACCGATTGGCCCAGTCACTGTTCATGGTAGGAGTGT---TTGGTGCCATGATGTTGTTTGGTTACCTTTCAGATAGgttggctaacaagtattcatgcacggggtagatgaacccattatagccca Alignment from Exonerate_protein2genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG gctactaaaattgacatatttcagtgcagagttatgtttgttctgcccagTGGAACCTT---TGCTCCCATAGAGCCTTTCACCGATTGGCCCAGTCACTGTTCATGGTAGGAGTGTTTGGTGCCATGATGTTGTTTGGTTACCTTTCAGATAGgttggctaacaagtattcatgcacggggtagatgaacccattatagccca Alignment from Exonerate_coding2genome gctactaaaattgacatatttcagtgcagagttatgtttgttctgcccagtggaacctttgctcccatagagcctttcaccgattggcccagtcactgttcatggtaggagtgtttggtgccatgatgttgtttggttacctttcagataggttggctaacaagtattcatgcacggggtagatgaacccattatagccca Alignment from GeneWise TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG gctactaaaattgacatatttcagtgcagagttatgtttgttctgcccagTGGAACCTT---TGCTCCCATAGAGCCTTTCACCGATTGGCCCAGTCACTGTTCATGGTAGGAGTGTTTGGTGCCATGATGTTGTTTGGTTACCTTTCAGATAGgttggctaacaagtattcatgcacggggtagatgaacccattatagccca #### Slc22a6_ID2288_9 --> 1 - 2 Original Alignment gCAGACGGGCCTGGGCATGGGCAGCACCATGGCCCGGGTGGGCAGCATAGTGAGCCCACTGATAAGCATGACTGCCGAGTTCTACCCCTCCATACCTCTCTTCATCTTCGGCGCTGTCCCCGTGGCCGCCAGCGCTGTCACTGCCCTGCTGCCAGAGACCTTGGGCCAGCCGCTGCCTGATACAGTGCAGGACCTGAAGAGCag aatatatctcactctgatccagatttccaggggccttatgatctgggcagaCAGACAGGATTGGGGATGGGCAGTACAATGGCTCAGGTGGCCAGCATATTGAGCCCACTAATAAGTATGACTGCCGAGTTCTACCCTTCCATACCTCTCTTCATCTATGGAGCTGTCCCTGTGGTAGCAAGTACAGTCACTGCTCTTCTGCCA------TTAGGCCAACCATTGCCTGATACAGTGCAGGACTTGAAAAGCaagtaagtaccccctatcctatcgctaatcctggtcttcaaggggggtaatc Alignment from CESAR gCAGACGGGCCTGGGCATGGGCAGCACCATGGCCCGGGTGGGCAGCATAGTGAGCCCACTGATAAGCATGACTGCCGAGTTCTACCCCTCCATACCTCTCTTCATCTTCGGCGCTGTCCCCGTGGCCGCCAGCGCTGTCACTGCCCTGCTGCCAGAGACCTTGGGCCAGCCGCTGCCTGATACAGTGCAGGACCTGAAGAGCag aatatatctcactctgatccagatttccaggggccttatgatctgggcagaCAGACAGGATTGGGGATGGGCAGTACAATGGCTCAGGTGGCCAGCATATTGAGCCCACTAATAAGTATGACTGCCGAGTTCTACCCTTCCATACCTCTCTTCATCTATGGAGCTGTCCCTGTGGTAGCAAGTACAGTCACTGCTCTTCTGCCA------TTAGGCCAACCATTGCCTGATACAGTGCAGGACTTGAAAAGCaagtaagtaccccctatcctatcgctaatcctggtcttcaaggggggtaatc Alignment from Spaln_aa2Genome GCAGACGGGCCTGGGCATGGGCAGCACCATGGCCCGGGTGGGCAGCATAGTGAGCCCACTGATAAGCATGACTGCCGAGTTCTACCCCTCCATACCTCTCTTCATCTTCGGCGCTGTCCCCGTGGCCGCCAGCGCTGTCACTGCCCTGCTGCCAGAGACCTTGGGCCAGCCGCTGCCTGATACAGTGCAGGACCTGAAGAGCAG aatatatctcactctgatccagatttccaggggccttatgatctgggcagACAGACAGGATTGGGGATGGGCAGTACAATGGCTCAGGTGGCCAGCATATTGAGCCCACTAATAAGTATGACTGCCGAGTTCTACCCTTCCATACCTCTCTTCATCTATGGAGCTGTCCCTGTGGTAGCAAGTACAGTCACTGCTCTTCTGCCA------TTAGGCCAACCATTGCCTGATACAGTGCAGGACTTGAAAAGCAAgtaagtaccccctatcctatcgctaatcctggtcttcaaggggggtaatc Alignment from Spaln_nt2Genome GCAGACGGGCCTGGGCATGGGCAGCACCATGGCCCGGGTGGGCAGCATAGTGAGCCCACTGATAAGCATGACTGCCGAGTTCTACCCCTCCATACCTCTCTTCATCTTCGGCGCTGTCCCCGTGGCCGCCAGCGCTGTCACTGCCCTGCTGCCAGAGACCTTGGGCCAGCCGCTGCCTGATACAGTGCAGGACCTGAAGAGCAG aatatatctcactctgatccagatttccaggggccttatgatctgggcagACAGACAGGATTGGGGATGGGCAGTACAATGGCTCAGGTGGCCAGCATATTGAGCCCACTAATAAGTATGACTGCCGAGTTCTACCCTTCCATACCTCTCTTCATCTATGGAGCTGTCCCTGTGGTAGCAAGTACAGTCACTGCTCTTCTGCCA------TTAGGCCAACCATTGCCTGATACAGTGCAGGACTTGAAAAGCAAgtaagtaccccctatcctatcgctaatcctggtcttcaaggggggtaatc Alignment from Pairagon GCAGACGGGCCTGGGCATGGGCAGCACCATGGCCCGGGTGGGCAGCATAGTGAGCCCACTGATAAGCATGACTGCCGAGTTCTACCCCTCCATACCTCTCTTCATCTTCGGCGCTGTCCCCGTGGCCGCCAGCGCTGTCACTGCCCTGCTGCCAGAGACCTTGGGCCAGCCGCTGCCTGATACAGTGCAGGACCTGAAGAGCAG aatatatctcactctgatccagatttccaggggccttatgatctgggcagACAGACAGGATTGGGGATGGGCAGTACAATGGCTCAGGTGGCCAGCATATTGAGCCCACTAATAAGTATGACTGCCGAGTTCTACCCTTCCATACCTCTCTTCATCTATGGAGCTGTCCCTGTGGTAGCAAGTACAGTCACTGCTCTTCTGCCA------TTAGGCCAACCATTGCCTGATACAGTGCAGGACTTGAAAAGCAAgtaagtaccccctatcctatcgctaatcctggtcttcaaggggggtaatc Alignment from Exonerate_protein2genome GCAGACGGGCCTGGGCATGGGCAGCACCATGGCCCGGGTGGGCAGCATAGTGAGCCCACTGATAAGCATGACTGCCGAGTTCTACCCCTCCATACCTCTCTTCATCTTCGGCGCTGTCCCCGTGGCCGCCAGCGCTGTCACTGCCCTGCTGCCAGAGACCTTGGGCCAGCCGCTGCCTGATACAGTGCAGGACCTGAAGAGCAG aatatatctcactctgatccagatttccaggggccttatgatctgggcagACAGACAGGATTGGGGATGGGCAGTACAATGGCTCAGGTGGCCAGCATATTGAGCCCACTAATAAGTATGACTGCCGAGTTCTACCCTTCCATACCTCTCTTCATCTATGGAGCTGTCCCTGTGGTAGCAAGTACAGTCACTGCTCTTCTGCCA------TTAGGCCAACCATTGCCTGATACAGTGCAGGACTTGAAAAGCAAgtaagtaccccctatcctatcgctaatcctggtcttcaaggggggtaatc Alignment from Exonerate_coding2genome GCAGACGGGCCTGGGCATGGGCAGCACCATGGCCCGGGTGGGCAGCATAGTGAGCCCACTGATAAGCATGACTGCCGAGTTCTACCCCTCCATACCTCTCTTCATCTTCGGCGCTGTCCCCGTGGCCGCCAGCGCTGTCACTGCCCTGCTGCCAGAGACCTTGGGCCAGCCGCTGCCTGATACAGTGCAGGACCTGAAGAGCAG aatatatctcactctgatccagatttccaggggccttatgatctgggcagACAGACAGGATTGGGGATGGGCAGTACAATGGCTCAGGTGGCCAGCATATTGAGCCCACTAATAAGTATGACTGCCGAGTTCTACCCTTCCATACCTCTCTTCATCTATGGAGCTGTCCCTGTGGTAGCAAGTACAGTCACTGCTCTTCTGCCA------TTAGGCCAACCATTGCCTGATACAGTGCAGGACTTGAAAAGCAAgtaagtaccccctatcctatcgctaatcctggtcttcaaggggggtaatc Alignment from GeneWise GCAGACGGGCCTGGGCATGGGCAGCACCATGGCCCGGGTGGGCAGCATAGTGAGCCCACTGATAAGCATGACTGCCGAGTTCTACCCCTCCATACCTCTCTTCATCTTCGGCGCTGTCCCCGTGGCCGCCAGCGCTGTCACTGCCCTGCTGCCAGAGACCTTGGGCCAGCCGCTGCCTGATACAGTGCAGGACCTGAAGAGCAGG aatatatctcactctgatccagatttccaggggccttatgatctgggcagACAGACAGGATTGGGGATGGGCAGTACAATGGCTCAGGTGGCCAGCATATTGAGCCCACTAATAAGTATGACTGCCGAGTTCTACCCTTCCATACCTCTCTTCATCTATGGAGCTGTCCCTGTGGTAGCAAGTACAGTCACTGCTCTTCTGCCA------TTAGGCCAACCATTGCCTGATACAGTGCAGGACTTGAAAAGCAAGtaagtaccccctatcctatcgctaatcctggtcttcaaggggggtaatc #### Slc22a8_ID2272_5 --> 1 - 0 Original Alignment gTGGGTACCAGAGTCCATACGCTGGCTGGTTCTGTCTGGAAAATTCTCAAAGGCTCTGAAGACACTCCAACGTGTGGCTACCTTCAACGGCAAGAAGGAGGAAGGGGAAAAGCTCACTGTGGAG actgaccccataatgcaacactaccttgcctctctttcctgggttgttaggTGGGTACCAGAATCTATATGTTGGCTGGTTCTGGCTGGGAAATTCTCAAAAACACTTAAGACACTTCAACGCTTT---ACCTTTAATGGCAAGAAAGAGGAAGGGGAAAAGCTCACTGTGGAAgtaattggaggagatgtgtgtctggaatcgacaatgagactcctttgtca Alignment from CESAR gTGGGTACCAGAGTCCATACGCTGGCTGGTTCTGTCTGGAAAATTCTCAAAGGCTCTGAAGACACTCCAACGTGTGGCTACCTTCAACGGCAAGAAGGAGGAAGGGGAAAAGCTCACTGTGGAG actgaccccataatgcaacactaccttgcctctctttcctgggttgttaggTGGGTACCAGAATCTATATGTTGGCTGGTTCTGGCTGGGAAATTCTCAAAAACACTTAAGACACTTCAACGCTTT---ACCTTTAATGGCAAGAAAGAGGAAGGGGAAAAGCTCACTGTGGAAgtaattggaggagatgtgtgtctggaatcgacaatgagactcctttgtca Alignment from Spaln_aa2Genome GTGGGTACCAGAGTCCATACGCTGGCTGGTTCTGTCTGGAAAATTCTCAAAGGCTCTGAAGACACTCCAACGTGTGGCTACCTTCAACGGCAAGAAGGAGGAAGGGGAAAAGCTCACTGTGGAG actgaccccataatgcaacactaccttgcctctctttcctgggttgttagGTGGGTACCAGAATCTATATGTTGGCTGGTTCTGGCTGGGAAATTCTCAAAAACACTTAAGACACTTCAACGCTTT---ACCTTTAATGGCAAGAAAGAGGAAGGGGAAAAGCTCACTGTGGAAgtaattggaggagatgtgtgtctggaatcgacaatgagactcctttgtca Alignment from Spaln_nt2Genome GTGGGTACCAGAGTCCATACGCTGGCTGGTTCTGTCTGGAAAATTCTCAAAGGCTCTGAAGACACTCCAACGTGTGGCTACCTTCAACGGCAAGAAGGAGGAAGGGGAAAAGCTCACTGTGGAG actgaccccataatgcaacactaccttgcctctctttcctgggttgttagGTGGGTACCAGAATCTATATGTTGGCTGGTTCTGGCTGGGAAATTCTCAAAAACACTTAAGACACTTCAACGCTT---TACCTTTAATGGCAAGAAAGAGGAAGGGGAAAAGCTCACTGTGGAAgtaattggaggagatgtgtgtctggaatcgacaatgagactcctttgtca Alignment from Pairagon GTGGGTACCAGAGTCCATACGCTGGCTGGTTCTGTCTGGAAAATTCTCAAAGGCTCTGAAGACACTCCAACGTGTGGCTACCTTCAACGGCAAGAAGGAGGAAGGGGAAAAGCTCACTGTGGAG actgaccccataatgcaacactaccttgcctctctttcctgggttgttagGTGGGTACCAGAATCTATATGTTGGCTGGTTCTGGCTGGGAAATTCTCAAAAACACTTAAGACACTTCAACGCTT---TACCTTTAATGGCAAGAAAGAGGAAGGGGAAAAGCTCACTGTGGAAgtaattggaggagatgtgtgtctggaatcgacaatgagactcctttgtca Alignment from Exonerate_protein2genome GTGGGTACCAGAGTCCATACGCTGGCTGGTTCTGTCTGGAAAATTCTCAAAGGCTCTGAAGACACTCCAACGTGTGGCTACCTTCAACGGCAAGAAGGAGGAAGGGGAAAAGCTCACTGTGGAG actgaccccataatgcaacactaccttgcctctctttcctgggttgttagGTGGGTACCAGAATCTATATGTTGGCTGGTTCTGGCTGGGAAATTCTCAAAAACACTTAAGACACTTCAACGCTTT---ACCTTTAATGGCAAGAAAGAGGAAGGGGAAAAGCTCACTGTGGAAgtaattggaggagatgtgtgtctggaatcgacaatgagactcctttgtca Alignment from Exonerate_coding2genome GTGGGTACCAGAGTCCATACGCTGGCTGGTTCTGTCTGGAAAATTCTCAAAGGCTCTGAAGACACTCCAACGTGTGGCTACCTTCAACGGCAAGAAGGAGGAAGGGGAAAAGCTCACTGTGGAG actgaccccataatgcaacactaccttgcctctctttcctgggttgttagGTGGGTACCAGAATCTATATGTTGGCTGGTTCTGGCTGGGAAATTCTCAAAAACACTTAAGACACTTCAACGCTTT---ACCTTTAATGGCAAGAAAGAGGAAGGGGAAAAGCTCACTGTGGAAgtaattggaggagatgtgtgtctggaatcgacaatgagactcctttgtca Alignment from GeneWise GTGGGTACCAGAGTCCATACGCTGGCTGGTTCTGTCTGGAAAATTCTCAAAGGCTCTGAAGACACTCCAACGTGTGGCTACCTTCAACGGCAAGAAGGAGGAAGGGGAAAAGCTCACTGTGGAG actgaccccataatgcaacactaccttgcctctctttcctgggttgttagGTGGGTACCAGAATCTATATGTTGGCTGGTTCTGGCTGGGAAATTCTCAAAAACACTTAAGACACTTCAACGCTTT---ACCTTTAATGGCAAGAAAGAGGAAGGGGAAAAGCTCACTGTGGAAgtaattggaggagatgtgtgtctggaatcgacaatgagactcctttgtca #### Slc22a8_ID2273_6 --> 0 - 2 Original Alignment GAGCTGAAGTTCAACTTGCAGAAGGACATCACCTCAGCCAAGGTCAAATATGGCTTATCTGACTTGTTCCGAGTGTCCATCCTGCGCCGT---GTGACCTTCTGTCTCTCTCTGGCCtg atgtggaattctttccaatgtgtcattggacttgtttaatttccttttagGAGCTGAAGTTTAACTTGCAGAGAGACATAACCTCAGCTGAGGTCAAATATGGATTATCTGACTTGTATCAAGTG---TTCCTACGACGACGAGTAACTTACTGTCTTTCTCTTTCCtggtgagttcagtctgttatagtgagctggctgtatttgaaaaaaaaaccac Alignment from CESAR GAGCTGAAGTTCAACTTGCAGAAGGACATCACCTCAGCCAAGGTCAAATATGGCTTATCTGACTTGTTCCGAGTGTCCATCCTGCGCCGTGTGACCTTCTGTCTCTCTCTGGCCtg atgtggaattctttccaatgtgtcattggacttgtttaatttccttttagGAGCTGAAGTTTAACTTGCAGAGAGACATAACCTCAGCTGAGGTCAAATATGGATTATCTGACTTGTATCAAGTGTTCCTACGACGACGAGTAACTTACTGTCTTTCTCTTTCCtggtgagttcagtctgttatagtgagctggctgtatttgaaaaaaaaaccac Alignment from Spaln_aa2Genome GAGCTGAAGTTCAACTTGCAGAAGGACATCACCTCAGCCAAGGTCAAATATGGCTTATCTGACTTGTTCCGAGTGTCCATCCTGCGCCGTGTGACCTTCTGTCTCTCTCTGGCCTG atgtggaattctttccaatgtgtcattggacttgtttaatttccttttagGAGCTGAAGTTTAACTTGCAGAGAGACATAACCTCAGCTGAGGTCAAATATGGATTATCTGACTTGTATCAAGTGTTCCTACGACGACGAGTAACTTACTGTCTTTCTCTTTCCTGgtgagttcagtctgttatagtgagctggctgtatttgaaaaaaaaaccac Alignment from Spaln_nt2Genome GAGCTGAAGTTCAACTTGCAGAAGGACATCACCTCAGCCAAGGTCAAATATGGCTTATCTGACTTGTTCCGAGTGTCCATCCTGCGCCGTGTGACCTTCTGTCTCTCTCTGGCCTG atgtggaattctttccaatgtgtcattggacttgtttaatttccttttagGAGCTGAAGTTTAACTTGCAGAGAGACATAACCTCAGCTGAGGTCAAATATGGATTATCTGACTTGTATCAAGTGTTCCTACGACGACGAGTAACTTACTGTCTTTCTCTTTCCTGgtgagttcagtctgttatagtgagctggctgtatttgaaaaaaaaaccac Alignment from Pairagon GAGCTGAAGTTCAACTTGCAGAAGGACATCACCTCAGCCAAGGTCAAATATGGCTTATCTGACTTGTTCCGAGTGTCCATCCTGCGCCGTGTGACCTTCTGTCTCTCTCTGGCCTG atgtggaattctttccaatgtgtcattggacttgtttaatttccttttagGAGCTGAAGTTTAACTTGCAGAGAGACATAACCTCAGCTGAGGTCAAATATGGATTATCTGACTTGTATCAAGTGTTCCTACGACGACGAGTAACTTACTGTCTTTCTCTTTCCTGgtgagttcagtctgttatagtgagctggctgtatttgaaaaaaaaaccac Alignment from Exonerate_protein2genome GAGCTGAAGTTCAACTTGCAGAAGGACATCACCTCAGCCAAGGTCAAATATGGCTTATCTGACTTGTTCCGAGTGTCCATCCTGCGCCGTGTGACCTTCTGTCTCTCTCTGGCCTG atgtggaattctttccaatgtgtcattggacttgtttaatttccttttagGAGCTGAAGTTTAACTTGCAGAGAGACATAACCTCAGCTGAGGTCAAATATGGATTATCTGACTTGTATCAAGTGTTCCTACGACGACGAGTAACTTACTGTCTTTCTCTTTCCTGgtgagttcagtctgttatagtgagctggctgtatttgaaaaaaaaaccac Alignment from Exonerate_coding2genome GAGCTGAAGTTCAACTTGCAGAAGGACATCACCTCAGCCAAGGTCAAATATGGCTTATCTGACTTGTTCCGAGTGTCCATCCTGCGCCGTGTGACCTTCTGTCTCTCTCTGGCCTG atgtggaattctttccaatgtgtcattggacttgtttaatttccttttagGAGCTGAAGTTTAACTTGCAGAGAGACATAACCTCAGCTGAGGTCAAATATGGATTATCTGACTTGTATCAAGTGTTCCTACGACGACGAGTAACTTACTGTCTTTCTCTTTCCTGgtgagttcagtctgttatagtgagctggctgtatttgaaaaaaaaaccac Alignment from GeneWise GAGCTGAAGTTCAACTTGCAGAAGGACATCACCTCAGCCAAGGTCAAATATGGCTTATCTGACTTGTTCCGAGTGTCCATCCTGCGCCGTGTGACCTTCTGTCTCTCTCTGGCCTG atgtggaattctttccaatgtgtcattggacttgtttaatttccttttagGAGCTGAAGTTTAACTTGCAGAGAGACATAACCTCAGCTGAGGTCAAATATGGATTATCTGACTTGTATCAAGTGTTCCTACGACGACGAGTAACTTACTGTCTTTCTCTTTCCTGgtgagttcagtctgttatagtgagctggctgtatttgaaaaaaaaaccac #### Slc22a8_ID2274_7 --> 1 - 1 Original Alignment gTTTGCTACTGGCTTTGCCTACTACAGTTTGGCTATGGGAGTAGAAGAATTTGGAGTCAACATCTACATACTCCAGATCATCTTCGGTGGGGTTGACATTCCCGCCAAGTTCATCACAATCCTCTCCATAAGTTATCTGGGCCGGCGCATCACTCAGGGCTTCCTCCTGATCCTGGCAGGAGTGGCCATCCTGGCCCTCATCTTTGTGTCTTCAg acaaatataaagcccacatcgcccgaccgtcttctccatgcctttttcaggTTTGCTACTGGGTTTGCTTATTATAGTTTGGCAATGGGAGTTGAAGAATTTGGAGTTAACATTTATATACTCCAGATCATCTTTGGTGGAGTTGATATTCCTCCTAAATTTATCACAGTCCTCTCCATAAGCTATCTAAGCCGCCGCATCACTCAAGGTTTCCTACTGATCTTAGCACGAGTGGTGATCCTAGCTCTCGTCTTTGTTTCTCTAggtgagctatggcaatcaccttccctaggaagaaacatctagaaccatatt Alignment from CESAR gTTTGCTACTGGCTTTGCCTACTACAGTTTGGCTATGGGAGTAGAAGAATTTGGAGTCAACATCTACATACTCCAGATCATCTTCGGTGGGGTTGACATTCCCGCCAAGTTCATCACAATCCTCTCCATAAGTTATCTGGGCCGGCGCATCACTCAGGGCTTCCTCCTGATCCTGGCAGGAGTGGCCATCCTGGCCCTCATCTTTGTGTCTTCAg acaaatataaagcccacatcgcccgaccgtcttctccatgcctttttcaggTTTGCTACTGGGTTTGCTTATTATAGTTTGGCAATGGGAGTTGAAGAATTTGGAGTTAACATTTATATACTCCAGATCATCTTTGGTGGAGTTGATATTCCTCCTAAATTTATCACAGTCCTCTCCATAAGCTATCTAAGCCGCCGCATCACTCAAGGTTTCCTACTGATCTTAGCACGAGTGGTGATCCTAGCTCTCGTCTTTGTTTCTCTAggtgagctatggcaatcaccttccctaggaagaaacatctagaaccatatt Alignment from Spaln_aa2Genome GTTTGCTACTGGCTTTGCCTACTACAGTTTGGCTATGGGAGTAGAAGAATTTGGAGTCAACATCTACATACTCCAGATCATCTTCGGTGGGGTTGACATTCCCGCCAAGTTCATCACAATCCTCTCCATAAGTTATCTGGGCCGGCGCATCACTCAGGGCTTCCTCCTGATCCTGGCAGGAGTGGCCATCCTGGCCCTCATCTTTGTGTCTTCAG acaaatataaagcccacatcgcccgaccgtcttctccatgcctttttcagGTTTGCTACTGGGTTTGCTTATTATAGTTTGGCAATGGGAGTTGAAGAATTTGGAGTTAACATTTATATACTCCAGATCATCTTTGGTGGAGTTGATATTCCTCCTAAATTTATCACAGTCCTCTCCATAAGCTATCTAAGCCGCCGCATCACTCAAGGTTTCCTACTGATCTTAGCACGAGTGGTGATCCTAGCTCTCGTCTTTGTTTCTCTAGgtgagctatggcaatcaccttccctaggaagaaacatctagaaccatatt Alignment from Spaln_nt2Genome GTTTGCTACTGGCTTTGCCTACTACAGTTTGGCTATGGGAGTAGAAGAATTTGGAGTCAACATCTACATACTCCAGATCATCTTCGGTGGGGTTGACATTCCCGCCAAGTTCATCACAATCCTCTCCATAAGTTATCTGGGCCGGCGCATCACTCAGGGCTTCCTCCTGATCCTGGCAGGAGTGGCCATCCTGGCCCTCATCTTTGTGTCTTCAG acaaatataaagcccacatcgcccgaccgtcttctccatgcctttttcagGTTTGCTACTGGGTTTGCTTATTATAGTTTGGCAATGGGAGTTGAAGAATTTGGAGTTAACATTTATATACTCCAGATCATCTTTGGTGGAGTTGATATTCCTCCTAAATTTATCACAGTCCTCTCCATAAGCTATCTAAGCCGCCGCATCACTCAAGGTTTCCTACTGATCTTAGCACGAGTGGTGATCCTAGCTCTCGTCTTTGTTTCTCTAGgtgagctatggcaatcaccttccctaggaagaaacatctagaaccatatt Alignment from Pairagon GTTTGCTACTGGCTTTGCCTACTACAGTTTGGCTATGGGAGTAGAAGAATTTGGAGTCAACATCTACATACTCCAGATCATCTTCGGTGGGGTTGACATTCCCGCCAAGTTCATCACAATCCTCTCCATAAGTTATCTGGGCCGGCGCATCACTCAGGGCTTCCTCCTGATCCTGGCAGGAGTGGCCATCCTGGCCCTCATCTTTGTGTCTTCAG acaaatataaagcccacatcgcccgaccgtcttctccatgcctttttcagGTTTGCTACTGGGTTTGCTTATTATAGTTTGGCAATGGGAGTTGAAGAATTTGGAGTTAACATTTATATACTCCAGATCATCTTTGGTGGAGTTGATATTCCTCCTAAATTTATCACAGTCCTCTCCATAAGCTATCTAAGCCGCCGCATCACTCAAGGTTTCCTACTGATCTTAGCACGAGTGGTGATCCTAGCTCTCGTCTTTGTTTCTCTAGgtgagctatggcaatcaccttccctaggaagaaacatctagaaccatatt Alignment from Exonerate_protein2genome GTTTGCTACTGGCTTTGCCTACTACAGTTTGGCTATGGGAGTAGAAGAATTTGGAGTCAACATCTACATACTCCAGATCATCTTCGGTGGGGTTGACATTCCCGCCAAGTTCATCACAATCCTCTCCATAAGTTATCTGGGCCGGCGCATCACTCAGGGCTTCCTCCTGATCCTGGCAGGAGTGGCCATCCTGGCCCTCATCTTTGTGTCTTCAG acaaatataaagcccacatcgcccgaccgtcttctccatgcctttttcagGTTTGCTACTGGGTTTGCTTATTATAGTTTGGCAATGGGAGTTGAAGAATTTGGAGTTAACATTTATATACTCCAGATCATCTTTGGTGGAGTTGATATTCCTCCTAAATTTATCACAGTCCTCTCCATAAGCTATCTAAGCCGCCGCATCACTCAAGGTTTCCTACTGATCTTAGCACGAGTGGTGATCCTAGCTCTCGTCTTTGTTTCTCTAGgtgagctatggcaatcaccttccctaggaagaaacatctagaaccatatt Alignment from Exonerate_coding2genome GTTTGCTACTGGCTTTGCCTACTACAGTTTGGCTATGGGAGTAGAAGAATTTGGAGTCAACATCTACATACTCCAGATCATCTTCGGTGGGGTTGACATTCCCGCCAAGTTCATCACAATCCTCTCCATAAGTTATCTGGGCCGGCGCATCACTCAGGGCTTCCTCCTGATCCTGGCAGGAGTGGCCATCCTGGCCCTCATCTTTGTGTCTTCAG acaaatataaagcccacatcgcccgaccgtcttctccatgcctttttcagGTTTGCTACTGGGTTTGCTTATTATAGTTTGGCAATGGGAGTTGAAGAATTTGGAGTTAACATTTATATACTCCAGATCATCTTTGGTGGAGTTGATATTCCTCCTAAATTTATCACAGTCCTCTCCATAAGCTATCTAAGCCGCCGCATCACTCAAGGTTTCCTACTGATCTTAGCACGAGTGGTGATCCTAGCTCTCGTCTTTGTTTCTCTAGgtgagctatggcaatcaccttccctaggaagaaacatctagaaccatatt Alignment from GeneWise GTTTGCTACTGGCTTTGCCTACTACAGTTTGGCTATGGGAGTAGAAGAATTTGGAGTCAACATCTACATACTCCAGATCATCTTCGGTGGGGTTGACATTCCCGCCAAGTTCATCACAATCCTCTCCATAAGTTATCTGGGCCGGCGCATCACTCAGGGCTTCCTCCTGATCCTGGCAGGAGTGGCCATCCTGGCCCTCATCTTTGTGTCTTCAG acaaatataaagcccacatcgcccgaccgtcttctccatgcctttttcagGTTTGCTACTGGGTTTGCTTATTATAGTTTGGCAATGGGAGTTGAAGAATTTGGAGTTAACATTTATATACTCCAGATCATCTTTGGTGGAGTTGATATTCCTCCTAAATTTATCACAGTCCTCTCCATAAGCTATCTAAGCCGCCGCATCACTCAAGGTTTCCTACTGATCTTAGCACGAGTGGTGATCCTAGCTCTCGTCTTTGTTTCTCTAGgtgagctatggcaatcaccttccctaggaagaaacatctagaaccatatt #### Slc29a2_ID791_5 --> 2 - 1 Original Alignment ccTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCa cagttggtagtaaagctctctctatagctttggcttccttcctttctcagctTTCTGCGCTGTTCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACGATGCCTTCTACCTACAGTACCCTTTTCCTCAGTGGCCATGGCTTGGCTGGAATCCTTGCTGCCCTTGCTATGCTCAAATCTTTGGCCagtaggtaaatggtgattttaagtgtttcaaattgccagtgagccaaccaa Alignment from CESAR ccTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCa cagttggtagtaaagctctctctatagctttggcttccttcctttctcagctTTCTGCGCTGTTCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACGATGCCTTCTACCTACAGTACCCTTTTCCTCAGTGGCCATGGCTTGGCTGGAATCCTTGCTGCCCTTGCTATGCTCAAATCTTTGGCCagtaggtaaatggtgattttaagtgtttcaaattgccagtgagccaaccaa Alignment from Spaln_aa2Genome CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA cagttggtagtaaagctctctctatagctttggcttccttcctttctcagCTTTCTGCGCTGTTCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACGATGCCTTCTACCTACAGTACCCTTTTCCTCAGTGGCCATGGCTTGGCTGGAATCCTTGCTGCCCTTGCTATGCTCAAATCTTTGGCCAgtaggtaaatggtgattttaagtgtttcaaattgccagtgagccaaccaa Alignment from Spaln_nt2Genome CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA cagttggtagtaaagctctctctatagctttggcttccttcctttctcagCTTTCTGCGCTGTTCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACGATGCCTTCTACCTACAGTACCCTTTTCCTCAGTGGCCATGGCTTGGCTGGAATCCTTGCTGCCCTTGCTATGCTCAAATCTTTGGCCAgtaggtaaatggtgattttaagtgtttcaaattgccagtgagccaaccaa Alignment from Pairagon CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA cagttggtagtaaagctctctctatagctttggcttccttcctttctcagCTTTCTGCGCTGTTCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACGATGCCTTCTACCTACAGTACCCTTTTCCTCAGTGGCCATGGCTTGGCTGGAATCCTTGCTGCCCTTGCTATGCTCAAATCTTTGGCCAgtaggtaaatggtgattttaagtgtttcaaattgccagtgagccaaccaa Alignment from Exonerate_protein2genome CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA cagttggtagtaaagctctctctatagctttggcttccttcctttctcagCTTTCTGCGCTGTTCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACGATGCCTTCTACCTACAGTACCCTTTTCCTCAGTGGCCATGGCTTGGCTGGAATCCTTGCTGCCCTTGCTATGCTCAAATCTTTGGCCAgtaggtaaatggtgattttaagtgtttcaaattgccagtgagccaaccaa Alignment from Exonerate_coding2genome ATCAATTCCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA cagttggtagtaaagctctctctatagctttggcttccttcctTTCTCAGCTTTCTGCGCTGTTCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACGATGCCTTCTACCTACAGTACCCTTTTCCTCAGTGGCCATGGCTTGGCTGGAATCCTTGCTGCCCTTGCTATGCTCAAATCTTTGGCCAgtaggtaaatggtgattttaagtgtttcaaattgccagtgagccaaccaa Alignment from GeneWise CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA cagttggtagtaaagctctctctatagctttggcttccttcctttctcagCTTTCTGCGCTGTTCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACGATGCCTTCTACCTACAGTACCCTTTTCCTCAGTGGCCATGGCTTGGCTGGAATCCTTGCTGCCCTTGCTATGCTCAAATCTTTGGCCAgtaggtaaatggtgattttaagtgtttcaaattgccagtgagccaaccaa #### Slc29a2_ID792_6 --> 2 - 0 Original Alignment gtGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gtacaaacaaagctggaatgggagacttgtggtctgtttgtgttttccaggtGACGTGGATGCCCAAACCTCTGCTCTGGGATACTTCATCACACCTTGTGTGGGCATCCTACTCCCCATTGTATGTTACCTTAGCTTGCCACACCTGgtcagtcgcttcatagtttatgttatgcatgcactgcttaaatataaaag Alignment from CESAR gtGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gtacaaacaaagctggaatgggagacttgtggtctgtttgtgttttccaggtGACGTGGATGCCCAAACCTCTGCTCTGGGATACTTCATCACACCTTGTGTGGGCATCCTACTCCCCATTGTATGTTACCTTAGCTTGCCACACCTGgtcagtcgcttcatagtttatgttatgcatgcactgcttaaatataaaag Alignment from Spaln_aa2Genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gtacaaacaaagctggaatgggagacttgtggtctgtttgtgttttccagGTGACGTGGATGCCCAAACCTCTGCTCTGGGATACTTCATCACACCTTGTGTGGGCATCCTACTCCCCATTGTATGTTACCTTAGCTTGCCACACCTGgtcagtcgcttcatagtttatgttatgcatgcactgcttaaatataaaag Alignment from Spaln_nt2Genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gtacaaacaaagctggaatgggagacttgtggtctgtttgtgttttccagGTGACGTGGATGCCCAAACCTCTGCTCTGGGATACTTCATCACACCTTGTGTGGGCATCCTACTCCCCATTGTATGTTACCTTAGCTTGCCACACCTGgtcagtcgcttcatagtttatgttatgcatgcactgcttaaatataaaag Alignment from Pairagon GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gtacaaacaaagctggaatgggagacttgtggtctgtttgtgttttccagGTGACGTGGATGCCCAAACCTCTGCTCTGGGATACTTCATCACACCTTGTGTGGGCATCCTACTCCCCATTGTATGTTACCTTAGCTTGCCACACCTGgtcagtcgcttcatagtttatgttatgcatgcactgcttaaatataaaag Alignment from Exonerate_protein2genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gtacaaacaaagctggaatgggagacttgtggtctgtttgtgttttccagGTGACGTGGATGCCCAAACCTCTGCTCTGGGATACTTCATCACACCTTGTGTGGGCATCCTACTCCCCATTGTATGTTACCTTAGCTTGCCACACCTGgtcagtcgcttcatagtttatgttatgcatgcactgcttaaatataaaag Alignment from Exonerate_coding2genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gtacaaacaaagctggaatgggagacttgtggtctgtttgtgttttccagGTGACGTGGATGCCCAAACCTCTGCTCTGGGATACTTCATCACACCTTGTGTGGGCATCCTACTCCCCATTGTATGTTACCTTAGCTTGCCACACCTGgtcagtcgcttcatagtttatgttatgcatgcactgcttaaatataaaag Alignment from GeneWise GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gtacaaacaaagctggaatgggagacttgtggtctgtttgtgttttccagGTGACGTGGATGCCCAAACCTCTGCTCTGGGATACTTCATCACACCTTGTGTGGGCATCCTACTCCCCATTGTATGTTACCTTAGCTTGCCACACCTGgtcagtcgcttcatagtttatgttatgcatgcactgcttaaatataaaag #### Slc29a2_ID795_9 --> 0 - 1 Original Alignment ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGg tgacctgaatacttcagtgactatccagtgatggggtgtgtgtctttcagATCTGGCTGACAGCGCTGTGCCTTGTGTTAGTCTTCACAGTTACCCTATCTGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGggtatggacttgtaatagttcacagtatggaccagaggagccagttctgaa Alignment from CESAR ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGg tgacctgaatacttcagtgactatccagtgatggggtgtgtgtctttcagATCTGGCTGACAGCGCTGTGCCTTGTGTTAGTCTTCACAGTTACCCTATCTGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGggtatggacttgtaatagttcacagtatggaccagaggagccagccctttg Alignment from Spaln_aa2Genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgacctgaatacttcagtgactatccagtgatggggtgtgtgtctttcagATCTGGCTGACAGCGCTGTGCCTTGTGTTAGTCTTCACAGTTACCCTATCTGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtatggacttgtaatagttcacagtatggaccagaggagccagttctgaa Alignment from Spaln_nt2Genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgacctgaatacttcagtgactatccagtgatggggtgtgtgtctttcagATCTGGCTGACAGCGCTGTGCCTTGTGTTAGTCTTCACAGTTACCCTATCTGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtatggacttgtaatagttcacagtatggaccagaggagccagttctgaa Alignment from Pairagon ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgacctgaatacttcagtgactatccagtgatggggtgtgtgtctttcagATCTGGCTGACAGCGCTGTGCCTTGTGTTAGTCTTCACAGTTACCCTATCTGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtatggacttgtaatagttcacagtatggaccagaggagccagttctgaa Alignment from Exonerate_protein2genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgacctgaatacttcagtgactatccagtgatggggtgtgtgtctttcagATCTGGCTGACAGCGCTGTGCCTTGTGTTAGTCTTCACAGTTACCCTATCTGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtatggacttgtaatagttcacagtatggaccagaggagccagttctgaa Alignment from Exonerate_coding2genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgacctgaatacttcagtgactatccagtgatggggtgtgtgtctttcagATCTGGCTGACAGCGCTGTGCCTTGTGTTAGTCTTCACAGTTACCCTATCTGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtatggacttgtaatagttcacagtatggaccagaggagccagttctgaa Alignment from GeneWise ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgacctgaatacttcagtgactatccagtgatggggtgtgtgtctttcagATCTGGCTGACAGCGCTGTGCCTTGTGTTAGTCTTCACAGTTACCCTATCTGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtatggacttgtaatagttcacagtatggaccagaggagccagttctgaa #### Slc29a2_ID796_10 --> 2 - 0 Original Alignment gtCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagtatggaccagaggagccagccctttggactttccatgtcaggtCTGTTCTTCAACCCTATCTGCTGCTTTCCACTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACTTCCTACTTCCTGTGGgtatgtgcctcagccacagtgccattaatgaaaagcactagggaaccaga Alignment from CESAR gtCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagtatggaccagaggagccagccctttggactttccatgtcaggtCTGTTCTTCAACCCTATCTGCTGCTTTCCACTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACTTCCTACTTCCTGTGGgtatgtgcctcagccacagtgccattaatgaaaagcactagggaaccaga Alignment from Spaln_aa2Genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagtatggaccagaggagccagccctttggactttccatgtcagGTCTGTTCTTCAACCCTATCTGCTGCTTTCCACTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACTTCCTACTTCCTGTGGgtatgtgcctcagccacagtgccattaatgaaaagcactagggaaccaga Alignment from Spaln_nt2Genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagtatggaccagaggagccagccctttggactttccatgtcagGTCTGTTCTTCAACCCTATCTGCTGCTTTCCACTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACTTCCTACTTCCTGTGGgtatgtgcctcagccacagtgccattaatgaaaagcactagggaaccaga Alignment from Pairagon GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagtatggaccagaggagccagccctttggactttccatgtcagGTCTGTTCTTCAACCCTATCTGCTGCTTTCCACTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACTTCCTACTTCCTGTGGgtatgtgcctcagccacagtgccattaatgaaaagcactagggaaccaga Alignment from Exonerate_protein2genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagtatggaccagaggagccagccctttggactttccatgtcagGTCTGTTCTTCAACCCTATCTGCTGCTTTCCACTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACTTCCTACTTCCTGTGGgtatgtgcctcagccacagtgccattaatgaaaagcactagggaaccaga Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagtatggaccagaggagccagccctttggactttccatgtcagGTCTGTTCTTCAACCCTATCTGCTGCTTTCCACTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACTTCCTACTTCCTGTGGgtatgtgcctcagccacagtgccattaatgaaaagcactagggaaccaga #### Slc29a2_ID797_11 --> 0 - 2 Original Alignment CCAGATGAGGACAGTCAGCAGCTGCTGCCCCTGCTGGTGTGCCTGCGCTTCCTGTTTGTCCCACTCTTCATGCTGTGCCACGTGCCCCAGCACGCCCGGCTGCCCATCATCTTCAGGCAGGATGCCTACTTCATCACCTTCATGCTGCTCTTCGCTGTTTCCAACGGCTACTTGGTGTCTCTCACCATGTGCCTGGCACCCag tgtaaaccatattgcctattttcaattgtaaccatgcactttcttcctagCCAGATGAAGACAGTCAGCAGTTGCTGCCCCTACTCATATGCCTGCGTTTCCTGTTTGTCCCACTCTTCATGCTGTGCCATGTGCCCCAGCACACCCGACTCCCACTTATCTTCAGGCAGGATGCATGCTTCATCACCTTCATGCTACTTTTTGCTGTTTCCAATGGCTATTTAGTCTCACTCACTATGTGCCTGTCCCCAaggtagtcaaggtcagggctcatgggctggacattgcattgtgcccagaagg Alignment from CESAR CCAGATGAGGACAGTCAGCAGCTGCTGCCCCTGCTGGTGTGCCTGCGCTTCCTGTTTGTCCCACTCTTCATGCTGTGCCACGTGCCCCAGCACGCCCGGCTGCCCATCATCTTCAGGCAGGATGCCTACTTCATCACCTTCATGCTGCTCTTCGCTGTTTCCAACGGCTACTTGGTGTCTCTCACCATGTGCCTGGCACCCag tgtaaaccatattgcctattttcaattgtaaccatgcactttcttcctagCCAGATGAAGACAGTCAGCAGTTGCTGCCCCTACTCATATGCCTGCGTTTCCTGTTTGTCCCACTCTTCATGCTGTGCCATGTGCCCCAGCACACCCGACTCCCACTTATCTTCAGGCAGGATGCATGCTTCATCACCTTCATGCTACTTTTTGCTGTTTCCAATGGCTATTTAGTCTCACTCACTATGTGCCTGTCCCCAaggtagtcaaggtcagggctcatgggctggacattgcattgtgcccagaagg Alignment from Spaln_aa2Genome CCAGATGAGGACAGTCAGCAGCTGCTGCCCCTGCTGGTGTGCCTGCGCTTCCTGTTTGTCCCACTCTTCATGCTGTGCCACGTGCCCCAGCACGCCCGGCTGCCCATCATCTTCAGGCAGGATGCCTACTTCATCACCTTCATGCTGCTCTTCGCTGTTTCCAACGGCTACTTGGTGTCTCTCACCATGTGCCTGGCACCCAG tgtaaaccatattgcctattttcaattgtaaccatgcactttcttcctagCCAGATGAAGACAGTCAGCAGTTGCTGCCCCTACTCATATGCCTGCGTTTCCTGTTTGTCCCACTCTTCATGCTGTGCCATGTGCCCCAGCACACCCGACTCCCACTTATCTTCAGGCAGGATGCATGCTTCATCACCTTCATGCTACTTTTTGCTGTTTCCAATGGCTATTTAGTCTCACTCACTATGTGCCTGTCCCCAAGgtagtcaaggtcagggctcatgggctggacattgcattgtgcccagaagg Alignment from Spaln_nt2Genome CCAGATGAGGACAGTCAGCAGCTGCTGCCCCTGCTGGTGTGCCTGCGCTTCCTGTTTGTCCCACTCTTCATGCTGTGCCACGTGCCCCAGCACGCCCGGCTGCCCATCATCTTCAGGCAGGATGCCTACTTCATCACCTTCATGCTGCTCTTCGCTGTTTCCAACGGCTACTTGGTGTCTCTCACCATGTGCCTGGCACCCAG tgtaaaccatattgcctattttcaattgtaaccatgcactttcttcctagCCAGATGAAGACAGTCAGCAGTTGCTGCCCCTACTCATATGCCTGCGTTTCCTGTTTGTCCCACTCTTCATGCTGTGCCATGTGCCCCAGCACACCCGACTCCCACTTATCTTCAGGCAGGATGCATGCTTCATCACCTTCATGCTACTTTTTGCTGTTTCCAATGGCTATTTAGTCTCACTCACTATGTGCCTGTCCCCAAGgtagtcaaggtcagggctcatgggctggacattgcattgtgcccagaagg Alignment from Pairagon CCAGATGAGGACAGTCAGCAGCTGCTGCCCCTGCTGGTGTGCCTGCGCTTCCTGTTTGTCCCACTCTTCATGCTGTGCCACGTGCCCCAGCACGCCCGGCTGCCCATCATCTTCAGGCAGGATGCCTACTTCATCACCTTCATGCTGCTCTTCGCTGTTTCCAACGGCTACTTGGTGTCTCTCACCATGTGCCTGGCACCCAG tgtaaaccatattgcctattttcaattgtaaccatgcactttcttcctagCCAGATGAAGACAGTCAGCAGTTGCTGCCCCTACTCATATGCCTGCGTTTCCTGTTTGTCCCACTCTTCATGCTGTGCCATGTGCCCCAGCACACCCGACTCCCACTTATCTTCAGGCAGGATGCATGCTTCATCACCTTCATGCTACTTTTTGCTGTTTCCAATGGCTATTTAGTCTCACTCACTATGTGCCTGTCCCCAAGgtagtcaaggtcagggctcatgggctggacattgcattgtgcccagaagg Alignment from Exonerate_protein2genome CCAGATGAGGACAGTCAGCAGCTGCTGCCCCTGCTGGTGTGCCTGCGCTTCCTGTTTGTCCCACTCTTCATGCTGTGCCACGTGCCCCAGCACGCCCGGCTGCCCATCATCTTCAGGCAGGATGCCTACTTCATCACCTTCATGCTGCTCTTCGCTGTTTCCAACGGCTACTTGGTGTCTCTCACCATGTGCCTGGCACCCAG tgtaaaccatattgcctattttcaattgtaaccatgcactttcttcctagCCAGATGAAGACAGTCAGCAGTTGCTGCCCCTACTCATATGCCTGCGTTTCCTGTTTGTCCCACTCTTCATGCTGTGCCATGTGCCCCAGCACACCCGACTCCCACTTATCTTCAGGCAGGATGCATGCTTCATCACCTTCATGCTACTTTTTGCTGTTTCCAATGGCTATTTAGTCTCACTCACTATGTGCCTGTCCCCAAGgtagtcaaggtcagggctcatgggctggacattgcattgtgcccagaagg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCAGATGAGGACAGTCAGCAGCTGCTGCCCCTGCTGGTGTGCCTGCGCTTCCTGTTTGTCCCACTCTTCATGCTGTGCCACGTGCCCCAGCACGCCCGGCTGCCCATCATCTTCAGGCAGGATGCCTACTTCATCACCTTCATGCTGCTCTTCGCTGTTTCCAACGGCTACTTGGTGTCTCTCACCATGTGCCTGGCACCCAGG-- tgtaaaccatattgcctattttcaattgtaaccatgcactttcttcctagCCAGATGAAGACAGTCAGCAGTTGCTGCCCCTACTCATATGCCTGCGTTTCCTGTTTGTCCCACTCTTCATGCTGTGCCATGTGCCCCAGCACACCCGACTCCCACTTATCTTCAGGCAGGATGCATGCTTCATCACCTTCATGCTACTTTTTGCTGTTTCCAATGGCTATTTAGTCTCACTCACTATGTGCCTGTCCCCAAGGTAgtcaaggtcagggctcatgggctggacattgcattgtgcccagaagg #### Slit1_ID8202_36 --> 1 - 1 Original Alignment gTGTGTCCATGGGAAATGCGTGCCGCTCGACGCTCTTGCCTACAGCTGCCAGTGCCAGGATGGGTACTCGGGGGCTCTGTGCAACCAGGTCGGGGCTGTGGCAGAGCCCTGTGGGGGCTTGCAGTGCCTGCATGGTCACTGCCAGGCCTCTGCCACCAAAGGGGCACACTGTGTGTGCAGCCCAGGCTTTTCAGGCGAGCTGTGTGAGCAAg gcgctgaaaacaattttttctcgaacaatgtttcttttatcttctcccagaTGTGTACATGGAAAATGTGTGCCACTCGATGCACTTGCATATAGCTGTGAATGCCAAGATGGGTATTCAGGAGCTCTGTGCAATCAGGTGGGGGCAGTTACTGATCCTTGTGGGTCCTTGCAGTGTCTGCACGGTCATTGCCAGGCCTCAGCAACAATTGGAGCCCATTGTGTGTGCAGCCCAGGTTTCTCAGGCAAACTATGGGAACAAggtgtgtgccctcttctggctagccctctggttgcaatactcctcatgact Alignment from CESAR gTGTGTCCATGGGAAATGCGTGCCGCTCGACGCTCTTGCCTACAGCTGCCAGTGCCAGGATGGGTACTCGGGGGCTCTGTGCAACCAGGTCGGGGCTGTGGCAGAGCCCTGTGGGGGCTTGCAGTGCCTGCATGGTCACTGCCAGGCCTCTGCCACCAAAGGGGCACACTGTGTGTGCAGCCCAGGCTTTTCAGGCGAGCTGTGTGAGCAAg gcgctgaaaacaattttttctcgaacaatgtttcttttatcttctcccagaTGTGTACATGGAAAATGTGTGCCACTCGATGCACTTGCATATAGCTGTGAATGCCAAGATGGGTATTCAGGAGCTCTGTGCAATCAGGTGGGGGCAGTTACTGATCCTTGTGGGTCCTTGCAGTGTCTGCACGGTCATTGCCAGGCCTCAGCAACAATTGGAGCCCATTGTGTGTGCAGCCCAGGTTTCTCAGGCAAACTATGGGAACAAggtgtgtgccctcttctggctagccctctggttgcaatactcctcatgact Alignment from Spaln_aa2Genome GTGTGTCCATGGGAAATGCGTGCCGCTCGACGCTCTTGCCTACAGCTGCCAGTGCCAGGATGGGTACTCGGGGGCTCTGTGCAACCAGGTCGGGGCTGTGGCAGAGCCCTGTGGGGGCTTGCAGTGCCTGCATGGTCACTGCCAGGCCTCTGCCACCAAAGGGGCACACTGTGTGTGCAGCCCAGGCTTTTCAGGCGAGCTGTGTGAGCAAG gcgctgaaaacaattttttctcgaacaatgtttcttttatcttctcccagATGTGTACATGGAAAATGTGTGCCACTCGATGCACTTGCATATAGCTGTGAATGCCAAGATGGGTATTCAGGAGCTCTGTGCAATCAGGTGGGGGCAGTTACTGATCCTTGTGGGTCCTTGCAGTGTCTGCACGGTCATTGCCAGGCCTCAGCAACAATTGGAGCCCATTGTGTGTGCAGCCCAGGTTTCTCAGGCAAACTATGGGAACAAGgtgtgtgccctcttctggctagccctctggttgcaatactcctcatgact Alignment from Spaln_nt2Genome GTGTGTCCATGGGAAATGCGTGCCGCTCGACGCTCTTGCCTACAGCTGCCAGTGCCAGGATGGGTACTCGGGGGCTCTGTGCAACCAGGTCGGGGCTGTGGCAGAGCCCTGTGGGGGCTTGCAGTGCCTGCATGGTCACTGCCAGGCCTCTGCCACCAAAGGGGCACACTGTGTGTGCAGCCCAGGCTTTTCAGGCGAGCTGTGTGAGCAAG gcgctgaaaacaattttttctcgaacaatgtttcttttatcttctcccagATGTGTACATGGAAAATGTGTGCCACTCGATGCACTTGCATATAGCTGTGAATGCCAAGATGGGTATTCAGGAGCTCTGTGCAATCAGGTGGGGGCAGTTACTGATCCTTGTGGGTCCTTGCAGTGTCTGCACGGTCATTGCCAGGCCTCAGCAACAATTGGAGCCCATTGTGTGTGCAGCCCAGGTTTCTCAGGCAAACTATGGGAACAAGgtgtgtgccctcttctggctagccctctggttgcaatactcctcatgact Alignment from Pairagon GTGTGTCCATGGGAAATGCGTGCCGCTCGACGCTCTTGCCTACAGCTGCCAGTGCCAGGATGGGTACTCGGGGGCTCTGTGCAACCAGGTCGGGGCTGTGGCAGAGCCCTGTGGGGGCTTGCAGTGCCTGCATGGTCACTGCCAGGCCTCTGCCACCAAAGGGGCACACTGTGTGTGCAGCCCAGGCTTTTCAGGCGAGCTGTGTGAGCAAG gcgctgaaaacaattttttctcgaacaatgtttcttttatcttctcccagATGTGTACATGGAAAATGTGTGCCACTCGATGCACTTGCATATAGCTGTGAATGCCAAGATGGGTATTCAGGAGCTCTGTGCAATCAGGTGGGGGCAGTTACTGATCCTTGTGGGTCCTTGCAGTGTCTGCACGGTCATTGCCAGGCCTCAGCAACAATTGGAGCCCATTGTGTGTGCAGCCCAGGTTTCTCAGGCAAACTATGGGAACAAGgtgtgtgccctcttctggctagccctctggttgcaatactcctcatgact Alignment from Exonerate_protein2genome GTGTGTCCATGGGAAATGCGTGCCGCTCGACGCTCTTGCCTACAGCTGCCAGTGCCAGGATGGGTACTCGGGGGCTCTGTGCAACCAGGTCGGGGCTGTGGCAGAGCCCTGTGGGGGCTTGCAGTGCCTGCATGGTCACTGCCAGGCCTCTGCCACCAAAGGGGCACACTGTGTGTGCAGCCCAGGCTTTTCAGGCGAGCTGTGTGAGCAAG gcgctgaaaacaattttttctcgaacaatgtttcttttatcttctcccagATGTGTACATGGAAAATGTGTGCCACTCGATGCACTTGCATATAGCTGTGAATGCCAAGATGGGTATTCAGGAGCTCTGTGCAATCAGGTGGGGGCAGTTACTGATCCTTGTGGGTCCTTGCAGTGTCTGCACGGTCATTGCCAGGCCTCAGCAACAATTGGAGCCCATTGTGTGTGCAGCCCAGGTTTCTCAGGCAAACTATGGGAACAAGgtgtgtgccctcttctggctagccctctggttgcaatactcctcatgact Alignment from Exonerate_coding2genome gcgctgaaaacaattttttctcgaacaatgtttcttttatcttctcccagatgtgtacatggaaaatgtgtgccactcgatgcacttgcatatagctgtgaatgccaagatgggtattcaggagctctgtgcaatcaggtgggggcagttactgatccttgtgggtccttgcagtgtctgcacggtcattgccaggcctcagcaacaattggagcccattgtgtgtgcagcccaggtttctcaggcaaactatgggaacaaggtgtgtgccctcttctggctagccctctggttgcaatactcctcatgact Alignment from GeneWise GTGTGTCCATGGGAAATGCGTGCCGCTCGACGCTCTTGCCTACAGCTGCCAGTGCCAGGATGGGTACTCGGGGGCTCTGTGCAACCAGGTCGGGGCTGTGGCAGAGCCCTGTGGGGGCTTGCAGTGCCTGCATGGTCACTGCCAGGCCTCTGCCACCAAAGGGGCACACTGTGTGTGCAGCCCAGGCTTTTCAGGCGAGCTGTGTGAGCAAG gcgctgaaaacaattttttctcgaacaatgtttcttttatcttctcccagATGTGTACATGGAAAATGTGTGCCACTCGATGCACTTGCATATAGCTGTGAATGCCAAGATGGGTATTCAGGAGCTCTGTGCAATCAGGTGGGGGCAGTTACTGATCCTTGTGGGTCCTTGCAGTGTCTGCACGGTCATTGCCAGGCCTCAGCAACAATTGGAGCCCATTGTGTGTGCAGCCCAGGTTTCTCAGGCAAACTATGGGAACAAGgtgtgtgccctcttctggctagccctctggttgcaatactcctcatgact #### Slit1_ID8225_14 --> 1 - 1 Original Alignment gCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAg gatggaatgccaaaactgagttttcattcttgttgttttcccacttccaggCATTTGGCCCAGAATCCTTTTATTTGTGATAGTAACCTGAAGTGGCTGGCAGATTTCCTACATACGAATCCCATGAAGACAACTGGAGCTCAATGTGATAGCCCCTGGCGC---CCAAACAAGCGTATTGGGCAGATCAAAAGCAATAAATTTCGGTGCTCAggtgaggtccaacaagaatctccaagggatgtagacttacagagttaacct Alignment from CESAR gCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAg gatggaatgccaaaactgagttttcattcttgttgttttcccacttccaggCATTTGGCCCAGAATCCTTTTATTTGTGATAGTAACCTGAAGTGGCTGGCAGATTTCCTACATACGAATCCCATGAAGACAACTGGAGCTCAATGTGATAGCCCCTGGCGC---CCAAACAAGCGTATTGGGCAGATCAAAAGCAATAAATTTCGGTGCTCAggtgaggtccaacaagaatctccaagggatgtagacttacagagttaacct Alignment from Spaln_aa2Genome GCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAG gatggaatgccaaaactgagttttcattcttgttgttttcccacttccagGCATTTGGCCCAGAATCCTTTTATTTGTGATAGTAACCTGAAGTGGCTGGCAGATTTCCTACATACGAATCCCATGAAGACAACTGGAGCTCAATGTGATAGCCCCTGGCGC---CCAAACAAGCGTATTGGGCAGATCAAAAGCAATAAATTTCGGTGCTCAGgtgaggtccaacaagaatctccaagggatgtagacttacagagttaacct Alignment from Spaln_nt2Genome GCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAG gatggaatgccaaaactgagttttcattcttgttgttttcccacttccagGCATTTGGCCCAGAATCCTTTTATTTGTGATAGTAACCTGAAGTGGCTGGCAGATTTCCTACATACGAATCCCATGAAGACAACTGGAGCTCAATGTGATAGCCCCTGGCGCC---CAAACAAGCGTATTGGGCAGATCAAAAGCAATAAATTTCGGTGCTCAGgtgaggtccaacaagaatctccaagggatgtagacttacagagttaacct Alignment from Pairagon GCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAG gatggaatgccaaaactgagttttcattcttgttgttttcccacttccagGCATTTGGCCCAGAATCCTTTTATTTGTGATAGTAACCTGAAGTGGCTGGCAGATTTCCTACATACGAATCCCATGAAGACAACTGGAGCTCAATGTGATAGCCCCTGGCGCC---CAAACAAGCGTATTGGGCAGATCAAAAGCAATAAATTTCGGTGCTCAGgtgaggtccaacaagaatctccaagggatgtagacttacagagttaacct Alignment from Exonerate_protein2genome GCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAG gatggaatgccaaaactgagttttcattcttgttgttttcccacttccagGCATTTGGCCCAGAATCCTTTTATTTGTGATAGTAACCTGAAGTGGCTGGCAGATTTCCTACATACGAATCCCATGAAGACAACTGGAGCTCAATGTGATAGCCCCTGGCGC---CCAAACAAGCGTATTGGGCAGATCAAAAGCAATAAATTTCGGTGCTCAGgtgaggtccaacaagaatctccaagggatgtagacttacagagttaacct Alignment from Exonerate_coding2genome GCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAGCCAAAGAGCAGTACTTCATTCCAG gatggaatgccaaaactgagttttcattcttgttgttttcccacttccagGCATTTGGCCCAGAATCCTTTTATTTGTGATAGTAACCTGAAGTGGCTGGCAGATTTCCTACATACGAATCCCATGAAGACAACTGGAGCTCAATGTGATAGCCCCTGGCGC---CCAAACAAGCGTATTGGGCAGATCAAAAGCAATAAATTTCGGTGCTCAGGTGAGGTCCAACAAGAATCTCCAAgggatgtagacttacagagttaacct Alignment from GeneWise GCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAGCCAAAGAGCAGTACTTCATTCCA------------------G gatggaatgccaaaactgagttttcattcttgttgttttcccacttccagGCATTTGGCCCAGAATCCTTTTATTTGTGATAGTAACCTGAAGTGGCTGGCAGATTTCCTACATACGAATCCCATGAAGACAACTGGAGCTCAATGTGATAGCCCCTGGCGC---CCAAACAAGCGTATTGGGCAGATCAAAAGCAATAAATTTCGGTGCTCAGGTGAGGTCCAACAAGAATCTCCAAGGGATGTAGACTTACAGAgttaacct #### Slit1_ID8226_13 --> 1 - 2 Original Alignment gCTTCTAAATGCCAACAAGATCAACTGCATCCGGCCTGATGCCTTCCAGGACCTGCAGAACCTCTCTCTGCTCTCCCTGTATGACAACAAGATCCAGAGTCTCGCCAAGGGCACCTTCACCTCCCTACGGGCCATCCAGACAct gggtaagcatgtattaggtcagggcttacttaatattctttttctttcaggCTTCTAAATGCCAACAAGATCAACTGCATCCGACCTGATGCCTTCCAGGACCTCCAGAACCTCTCCCTCCTCTCCCTGTATGACAACAAAATCCAGAGTCTTGCTAAGGGGACTTTCACATCCCTACGGGCCATTCAGACCctgtcagttctttgtctcctcaatcctctctccccacctagagtgatgctat Alignment from CESAR gCTTCTAAATGCCAACAAGATCAACTGCATCCGGCCTGATGCCTTCCAGGACCTGCAGAACCTCTCTCTGCTCTCCCTGTATGACAACAAGATCCAGAGTCTCGCCAAGGGCACCTTCACCTCCCTACGGGCCATCCAGACAct gggtaagcatgtattaggtcagggcttacttaatattctttttctttcaggCTTCTAAATGCCAACAAGATCAACTGCATCCGACCTGATGCCTTCCAGGACCTCCAGAACCTCTCCCTCCTCTCCCTGTATGACAACAAAATCCAGAGTCTTGCTAAGGGGACTTTCACATCCCTACGGGCCATTCAGACCctgtcagttctttgtctcctcaatcctctctccccacctagagtgatgctat Alignment from Spaln_aa2Genome GCTTCTAAATGCCAACAAGATCAACTGCATCCGGCCTGATGCCTTCCAGGACCTGCAGAACCTCTCTCTGCTCTCCCTGTATGACAACAAGATCCAGAGTCTCGCCAAGGGCACCTTCACCTCCCTACGGGCCATCCAGACACT gggtaagcatgtattaggtcagggcttacttaatattctttttctttcagGCTTCTAAATGCCAACAAGATCAACTGCATCCGACCTGATGCCTTCCAGGACCTCCAGAACCTCTCCCTCCTCTCCCTGTATGACAACAAAATCCAGAGTCTTGCTAAGGGGACTTTCACATCCCTACGGGCCATTCAGACCCTgtcagttctttgtctcctcaatcctctctccccacctagagtgatgctat Alignment from Spaln_nt2Genome GCTTCTAAATGCCAACAAGATCAACTGCATCCGGCCTGATGCCTTCCAGGACCTGCAGAACCTCTCTCTGCTCTCCCTGTATGACAACAAGATCCAGAGTCTCGCCAAGGGCACCTTCACCTCCCTACGGGCCATCCAGACACT gggtaagcatgtattaggtcagggcttacttaatattctttttctttcagGCTTCTAAATGCCAACAAGATCAACTGCATCCGACCTGATGCCTTCCAGGACCTCCAGAACCTCTCCCTCCTCTCCCTGTATGACAACAAAATCCAGAGTCTTGCTAAGGGGACTTTCACATCCCTACGGGCCATTCAGACCCTgtcagttctttgtctcctcaatcctctctccccacctagagtgatgctat Alignment from Pairagon GCTTCTAAATGCCAACAAGATCAACTGCATCCGGCCTGATGCCTTCCAGGACCTGCAGAACCTCTCTCTGCTCTCCCTGTATGACAACAAGATCCAGAGTCTCGCCAAGGGCACCTTCACCTCCCTACGGGCCATCCAGACACT gggtaagcatgtattaggtcagggcttacttaatattctttttctttcagGCTTCTAAATGCCAACAAGATCAACTGCATCCGACCTGATGCCTTCCAGGACCTCCAGAACCTCTCCCTCCTCTCCCTGTATGACAACAAAATCCAGAGTCTTGCTAAGGGGACTTTCACATCCCTACGGGCCATTCAGACCCTgtcagttctttgtctcctcaatcctctctccccacctagagtgatgctat Alignment from Exonerate_protein2genome GCTTCTAAATGCCAACAAGATCAACTGCATCCGGCCTGATGCCTTCCAGGACCTGCAGAACCTCTCTCTGCTCTCCCTGTATGACAACAAGATCCAGAGTCTCGCCAAGGGCACCTTCACCTCCCTACGGGCCATCCAGACACT gggtaagcatgtattaggtcagggcttacttaatattctttttctttcagGCTTCTAAATGCCAACAAGATCAACTGCATCCGACCTGATGCCTTCCAGGACCTCCAGAACCTCTCCCTCCTCTCCCTGTATGACAACAAAATCCAGAGTCTTGCTAAGGGGACTTTCACATCCCTACGGGCCATTCAGACCCTgtcagttctttgtctcctcaatcctctctccccacctagagtgatgctat Alignment from Exonerate_coding2genome GCTTCTAAATGCCAACAAGATCAACTGCATCCGGCCTGATGCCTTCCAGGACCTGCAGAACCTCTCTCTGCTCTCCCTGTATGACAACAAGATCCAGAGTCTCGCCAAGGGCACCTTCACCTCCCTACGGGCCATCCAGACACT gggtaagcatgtattaggtcagggcttacttaatattctttttctttcagGCTTCTAAATGCCAACAAGATCAACTGCATCCGACCTGATGCCTTCCAGGACCTCCAGAACCTCTCCCTCCTCTCCCTGTATGACAACAAAATCCAGAGTCTTGCTAAGGGGACTTTCACATCCCTACGGGCCATTCAGACCCTgtcagttctttgtctcctcaatcctctctccccacctagagtgatgctat Alignment from GeneWise GCTTCTAAATGCCAACAAGATCAACTGCATCCGGCCTGATGCCTTCCAGGACCTGCAGAACCTCTCTCTGCTCTCCCTGTATGACAACAAGATCCAGAGTCTCGCCAAGGGCACCTTCACCTCCCTACGGGCCATCCAGACACT gggtaagcatgtattaggtcagggcttacttaatattctttttctttcagGCTTCTAAATGCCAACAAGATCAACTGCATCCGACCTGATGCCTTCCAGGACCTCCAGAACCTCTCCCTCCTCTCCCTGTATGACAACAAAATCCAGAGTCTTGCTAAGGGGACTTTCACATCCCTACGGGCCATTCAGACCCTgtcagttctttgtctcctcaatcctctctccccacctagagtgatgctat #### Slit1_ID8232_7 --> 1 - 2 Original Alignment gACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCtt taaataggtccttttaggcatgggtggcagtcatattttttctctcctagtCCATTCAATAATAATAACATCAGTGCTATCCCC------CGTTTCAATCATATCCCTAAGCTCCACACTttgtgagctgtcttgactgttggtgtatcacctacactatggataaggtgcc Alignment from CESAR gACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCtt taaataggtccttttaggcatgggtggcagtcatattttttctctcctagtCCATTCAATAATAATAACATCAGTGCTATCCCC------CGTTTCAATCATATCCCTAAGCTCCACACTttgtgagctgtcttgactgttggtgtatcacctacactatggataaggtgcc Alignment from Spaln_aa2Genome GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT taaataggtccttttaggcatgggtggcagtcatattttttctctcctagTCCATTCAATAATAATAACATCAGTGCTATCCCC------CGTTTCAATCATATCCCTAAGCTCCACACTTTgtgagctgtcttgactgttggtgtatcacctacactatggataaggtgcc Alignment from Spaln_nt2Genome GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT taaataggtccttttaggcatgggtggcagtcatattttttctctcctagTCCATTCAATAATAATAACATCAGTGCTATCC------CCCGTTTCAATCATATCCCTAAGCTCCACACTTTgtgagctgtcttgactgttggtgtatcacctacactatggataaggtgcc Alignment from Pairagon GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT taaataggtccttttaggcatgggtggcagtcatattttttctctcctagTCCATTCAATAATAATAACATCAGTGCTATCC------CCCGTTTCAATCATATCCCTAAGCTCCACACTTTgtgagctgtcttgactgttggtgtatcacctacactatggataaggtgcc Alignment from Exonerate_protein2genome GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT taaataggtccttttaggcatgggtggcagtcatattttttctctcctagTCCATTCAATAATAATAACATCAGTGCTATCCCC------CGTTTCAATCATATCCCTAAGCTCCACACTTTgtgagctgtcttgactgttggtgtatcacctacactatggataaggtgcc Alignment from Exonerate_coding2genome taaataggtccttttaggcatgggtggcagtcatattttttctctcctagtccattcaataataataacatcagtgctatcccccgtttcaatcatatccctaagctccacactttgtgagctgtcttgactgttggtgtatcacctacactatggataaggtgcc Alignment from GeneWise GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT taaataggtccttttaggcatgggtggcagtcatattttttctctcctagTCCATTCAATAATAATAACATCAGTGCTATCCCC------CGTTTCAATCATATCCCTAAGCTCCACACTTTgtgagctgtcttgactgttggtgtatcacctacactatggataaggtgcc #### Slk_ID10247_3 --> 0 - 1 Original Alignment ATCCTCATTGAATTCTGTGCAGGGGGAGCAGTGGATGCTGTGATGCTTg gagttctcctttggaatgccaagatttttattgttccactattttcttagATCCTCATTGAATTTTGTGCAGGGGGAGCAGTTGATGCGGTAAAGCTTagtaaagacctcaacttatttttaaccccaccatccttactatgtagcttt Alignment from CESAR ATCCTCATTGAATTCTGTGCAGGGGGAGCAGTGGATGCTGTGATGCTTg gagttctcctttggaatgccaagatttttattgttccactattttcttagATCCTCATTGAATTTTGTGCAGGGGGAGCAGTTGATGCGGTAAAGCTTagtaaagacctcaacttatttttaaccccaccatccttactatgtagcttt Alignment from Spaln_aa2Genome ATCCTCATTGAATTCTGTGCAGGGGGAGCAGTGGATGCTGTGATGCTTG gagttctcctttggaatgccaagatttttattgttccactattttcttagATCCTCATTGAATTTTGTGCAGGGGGAGCAGTTGATGCGGTAAAGCTTAgtaaagacctcaacttatttttaaccccaccatccttactatgtagcttt Alignment from Spaln_nt2Genome ATCCTCATTGAATTCTGTGCAGGGGGAGCAGTGGATGCTGTGATGCTTG gagttctcctttggaatgccaagatttttattgttccactattttcttagATCCTCATTGAATTTTGTGCAGGGGGAGCAGTTGATGCGGTAAAGCTTAgtaaagacctcaacttatttttaaccccaccatccttactatgtagcttt Alignment from Pairagon ATCCTCATTGAATTCTGTGCAGGGGGAGCAGTGGATGCTGTGATGCTTGAACTTGAGAGACCATTAACTGAA gagttctcctttggaatgccaagatttttattgttccactattttcttagATCCTCATTGAATTTTGTGCAGGGGGAGCAGTTGATGCGGTAAAGCTT-----------------------Agtaaagacctcaacttatttttaaccccaccatccttactatgtagcttt Alignment from Exonerate_protein2genome ATCCTCATTGAATTCTGTGCAGGGGGAGCAGTGGATGCTGTGATGCTTG gagttctcctttggaatgccaagatttttattgttccactattttcttagATCCTCATTGAATTTTGTGCAGGGGGAGCAGTTGATGCGGTAAAGCTTAgtaaagacctcaacttatttttaaccccaccatccttactatgtagcttt Alignment from Exonerate_coding2genome ATCCTCATTGAATTCTGTGCAGGGGGAGCAGTGGATGCTGTGATGCTTG gagttctcctttggaatgccaagatttttattgttccactattttcttagATCCTCATTGAATTTTGTGCAGGGGGAGCAGTTGATGCGGTAAAGCTTAgtaaagacctcaacttatttttaaccccaccatccttactatgtagcttt Alignment from GeneWise ATCCTCATTGAATTCTGTGCAGGGGGAGCAGTGGATGCTGTGATGCTT- gagttctcctttggaatgccaagatttttattgttccactattttcttagATCCTCATTGAATTTTGTGCAGGGGGAGCAGTTGATGCGGTAAAGCTTAgtaaagacctcaacttatttttaaccccaccatccttactatgtagcttt #### Slk_ID10250_6 --> 1 - 2 Original Alignment gATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAAtg acttggtaactattttcaatacctcccccagactctgctttggtttttaggATGTCTCCTGAAGTGGTCATGTGTGAAACATCCAAGGACACACCTTATGATTACAAAGCTGATGTTTGGTCTCTGGGGATAACTTTAATAGAAATGGTTGAAATAGCACCACCTCATCATGACTTAAATCCTATGCGTGTGCTGCTGAAGATCGCAAAATTTGCACCCCCAACACTGGCCCAGCCGTCCAAGctgtatgataatgctgttgaatgaaacctaagactggttttccagatgccta Alignment from CESAR gATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAAtg acttggtaactattttcaatacctcccccagactctgctttggtttttaggATGTCTCCTGAAGTGGTCATGTGTGAAACATCCAAGGACACACCTTATGATTACAAAGCTGATGTTTGGTCTCTGGGGATAACTTTAATAGAAATGGTTGAAATAGCACCACCTCATCATGACTTAAATCCTATGCGTGTGCTGCTGAAGATCGCAAAATTTGCACCCCCAACACTGGCCCAGCCGTCCAAGctgtatgataatgctgttgaatgaaacctaagactggttttccagatgccta Alignment from Spaln_aa2Genome GATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAATG acttggtaactattttcaatacctcccccagactctgctttggtttttagGATGTCTCCTGAAGTGGTCATGTGTGAAACATCCAAGGACACACCTTATGATTACAAAGCTGATGTTTGGTCTCTGGGGATAACTTTAATAGAAATGGTTGAAATAGCACCACCTCATCATGACTTAAATCCTATGCGTGTGCTGCTGAAGATCGCAAAATTTGCACCCCCAACACTGGCCCAGCCGTCCAAGCTgtatgataatgctgttgaatgaaacctaagactggttttccagatgccta Alignment from Spaln_nt2Genome GATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAATG acttggtaactattttcaatacctcccccagactctgctttggtttttagGATGTCTCCTGAAGTGGTCATGTGTGAAACATCCAAGGACACACCTTATGATTACAAAGCTGATGTTTGGTCTCTGGGGATAACTTTAATAGAAATGGTTGAAATAGCACCACCTCATCATGACTTAAATCCTATGCGTGTGCTGCTGAAGATCGCAAAATTTGCACCCCCAACACTGGCCCAGCCGTCCAAGCTgtatgataatgctgttgaatgaaacctaagactggttttccagatgccta Alignment from Pairagon GATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAATG acttggtaactattttcaatacctcccccagactctgctttggtttttagGATGTCTCCTGAAGTGGTCATGTGTGAAACATCCAAGGACACACCTTATGATTACAAAGCTGATGTTTGGTCTCTGGGGATAACTTTAATAGAAATGGTTGAAATAGCACCACCTCATCATGACTTAAATCCTATGCGTGTGCTGCTGAAGATCGCAAAATTTGCACCCCCAACACTGGCCCAGCCGTCCAAGCTgtatgataatgctgttgaatgaaacctaagactggttttccagatgccta Alignment from Exonerate_protein2genome GATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAATG acttggtaactattttcaatacctcccccagactctgctttggtttttagGATGTCTCCTGAAGTGGTCATGTGTGAAACATCCAAGGACACACCTTATGATTACAAAGCTGATGTTTGGTCTCTGGGGATAACTTTAATAGAAATGGTTGAAATAGCACCACCTCATCATGACTTAAATCCTATGCGTGTGCTGCTGAAGATCGCAAAATTTGCACCCCCAACACTGGCCCAGCCGTCCAAGCTgtatgataatgctgttgaatgaaacctaagactggttttccagatgccta Alignment from Exonerate_coding2genome GATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAATG acttggtaactattttcaatacctcccccagactctgctttggtttttagGATGTCTCCTGAAGTGGTCATGTGTGAAACATCCAAGGACACACCTTATGATTACAAAGCTGATGTTTGGTCTCTGGGGATAACTTTAATAGAAATGGTTGAAATAGCACCACCTCATCATGACTTAAATCCTATGCGTGTGCTGCTGAAGATCGCAAAATTTGCACCCCCAACACTGGCCCAGCCGTCCAAGCTgtatgataatgctgttgaatgaaacctaagactggttttccagatgccta Alignment from GeneWise GATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAATG acttggtaactattttcaatacctcccccagactctgctttggtttttagGATGTCTCCTGAAGTGGTCATGTGTGAAACATCCAAGGACACACCTTATGATTACAAAGCTGATGTTTGGTCTCTGGGGATAACTTTAATAGAAATGGTTGAAATAGCACCACCTCATCATGACTTAAATCCTATGCGTGTGCTGCTGAAGATCGCAAAATTTGCACCCCCAACACTGGCCCAGCCGTCCAAGCTgtatgataatgctgttgaatgaaacctaagactggttttccagatgccta #### Slk_ID10251_7 --> 1 - 0 Original Alignment gTCTTCAAATTTTAAGGACTTTCTAAGGAAATGCTTGGAAAAGAATGTGGATGCGCGGTGGACCACGTCTCAGCTGTTGCAG tctctggggctggatggcagtttttgtgagaccctgttgttctcttgcaggTCTTCAAATTTTAAGGATTTCCTACGGAAATGCCTGGAAAAGAATGTGGATGCACAGTGGACCACATCTCAGCTGTTGCAGgtaagtttgacaatagtctgagataattaagcaaattgtttgatcctgta Alignment from CESAR gTCTTCAAATTTTAAGGACTTTCTAAGGAAATGCTTGGAAAAGAATGTGGATGCGCGGTGGACCACGTCTCAGCTGTTGCAG tctctggggctggatggcagtttttgtgagaccctgttgttctcttgcaggTCTTCAAATTTTAAGGATTTCCTACGGAAATGCCTGGAAAAGAATGTGGATGCACAGTGGACCACATCTCAGCTGTTGCAGgtaagtttgacaatagtctgagataattaagcaaattgtttgatcctgta Alignment from Spaln_aa2Genome GTCTTCAAATTTTAAGGACTTTCTAAGGAAATGCTTGGAAAAGAATGTGGATGCGCGGTGGACCACGTCTCAGCTGTTGCAG tctctggggctggatggcagtttttgtgagaccctgttgttctcttgcagGTCTTCAAATTTTAAGGATTTCCTACGGAAATGCCTGGAAAAGAATGTGGATGCACAGTGGACCACATCTCAGCTGTTGCAGgtaagtttgacaatagtctgagataattaagcaaattgtttgatcctgta Alignment from Spaln_nt2Genome GTCTTCAAATTTTAAGGACTTTCTAAGGAAATGCTTGGAAAAGAATGTGGATGCGCGGTGGACCACGTCTCAGCTGTTGCAG tctctggggctggatggcagtttttgtgagaccctgttgttctcttgcagGTCTTCAAATTTTAAGGATTTCCTACGGAAATGCCTGGAAAAGAATGTGGATGCACAGTGGACCACATCTCAGCTGTTGCAGgtaagtttgacaatagtctgagataattaagcaaattgtttgatcctgta Alignment from Pairagon GTCTTCAAATTTTAAGGACTTTCTAAGGAAATGCTTGGAAAAGAATGTGGATGCGCGGTGGACCACGTCTCAGCTGTTGCAG tctctggggctggatggcagtttttgtgagaccctgttgttctcttgcagGTCTTCAAATTTTAAGGATTTCCTACGGAAATGCCTGGAAAAGAATGTGGATGCACAGTGGACCACATCTCAGCTGTTGCAGgtaagtttgacaatagtctgagataattaagcaaattgtttgatcctgta Alignment from Exonerate_protein2genome GTCTTCAAATTTTAAGGACTTTCTAAGGAAATGCTTGGAAAAGAATGTGGATGCGCGGTGGACCACGTCTCAGCTGTTGCAG tctctggggctggatggcagtttttgtgagaccctgttgttctcttgcagGTCTTCAAATTTTAAGGATTTCCTACGGAAATGCCTGGAAAAGAATGTGGATGCACAGTGGACCACATCTCAGCTGTTGCAGgtaagtttgacaatagtctgagataattaagcaaattgtttgatcctgta Alignment from Exonerate_coding2genome GTCTTCAAATTTTAAGGACTTTCTAAGGAAATGCTTGGAAAAGAATGTGGATGCGCGGTGGACCACGTCTCAGCTGTTGCAG tctctggggctggatggcagtttttgtgagaccctgttgttctcttgcagGTCTTCAAATTTTAAGGATTTCCTACGGAAATGCCTGGAAAAGAATGTGGATGCACAGTGGACCACATCTCAGCTGTTGCAGgtaagtttgacaatagtctgagataattaagcaaattgtttgatcctgta Alignment from GeneWise GTCTTCAAATTTTAAGGACTTTCTAAGGAAATGCTTGGAAAAGAATGTGGATGCGCGGTGGACCACGTCTCAGCTGTTGCAG tctctggggctggatggcagtttttgtgagaccctgttgttctcttgcagGTCTTCAAATTTTAAGGATTTCCTACGGAAATGCCTGGAAAAGAATGTGGATGCACAGTGGACCACATCTCAGCTGTTGCAGgtaagtttgacaatagtctgagataattaagcaaattgtttgatcctgta #### Slk_ID10254_10 --> 0 - 2 Original Alignment GAGACAAGAAGACAGAAGAAAACATTGAAGAAAACACGCAAGTTTATTGTCGATGGTGTAGAAGTGAGTGTGACGACATCGAAGATAGTTACAGACAGCGACTCCAAAACGGAGGAACTGCGCTTTCTCag gctcatggcattcttacactacaattgactatctccctctttgctcctagGGAACACAAAGGCAGAGAAAAACACTCAAGAAGACACGCAAGTTTATTGTTGATGGTGAGGAAGTAAGTGTGACCACATCAAAAATAGTTACAGATGGCGATGCCAATACAGAGGAGCTATGCTTTCTCcggtaggttgaacagcaagaagagcaggtgtactattcgggactacaattgc Alignment from CESAR GAGACAAGAAGACAGAAGAAAACATTGAAGAAAACACGCAAGTTTATTGTCGATGGTGTAGAAGTGAGTGTGACGACATCGAAGATAGTTACAGACAGCGACTCCAAAACGGAGGAACTGCGCTTTCTCag gctcatggcattcttacactacaattgactatctccctctttgctcctagGGAACACAAAGGCAGAGAAAAACACTCAAGAAGACACGCAAGTTTATTGTTGATGGTGAGGAAGTAAGTGTGACCACATCAAAAATAGTTACAGATGGCGATGCCAATACAGAGGAGCTATGCTTTCTCcggtaggttgaacagcaagaagagcaggtgtactattcgggactacaattgc Alignment from Spaln_aa2Genome GAGACAAGAAGACAGAAGAAAACATTGAAGAAAACACGCAAGTTTATTGTCGATGGTGTAGAAGTGAGTGTGACGACATCGAAGATAGTTACAGACAGCGACTCCAAAACGGAGGAACTGCGCTTTCTCAG gctcatggcattcttacactacaattgactatctccctctttgctcctagGGAACACAAAGGCAGAGAAAAACACTCAAGAAGACACGCAAGTTTATTGTTGATGGTGAGGAAGTAAGTGTGACCACATCAAAAATAGTTACAGATGGCGATGCCAATACAGAGGAGCTATGCTTTCTCCGgtaggttgaacagcaagaagagcaggtgtactattcgggactacaattgc Alignment from Spaln_nt2Genome GAGACAAGAAGACAGAAGAAAACATTGAAGAAAACACGCAAGTTTATTGTCGATGGTGTAGAAGTGAGTGTGACGACATCGAAGATAGTTACAGACAGCGACTCCAAAACGGAGGAACTGCGCTTTCTCAG gctcatggcattcttacactacaattgactatctccctctttgctcctagGGAACACAAAGGCAGAGAAAAACACTCAAGAAGACACGCAAGTTTATTGTTGATGGTGAGGAAGTAAGTGTGACCACATCAAAAATAGTTACAGATGGCGATGCCAATACAGAGGAGCTATGCTTTCTCCGgtaggttgaacagcaagaagagcaggtgtactattcgggactacaattgc Alignment from Pairagon GAGACAAGAAGACAGAAGAAAACATTGAAGAAAACACGCAAGTTTATTGTCGATGGTGTAGAAGTGAGTGTGACGACATCGAAGATAGTTACAGACAGCGACTCCAAAACGGAGGAACTGCGCTTTCTCAG gctcatggcattcttacactacaattgactatctccctctttgctcctagGGAACACAAAGGCAGAGAAAAACACTCAAGAAGACACGCAAGTTTATTGTTGATGGTGAGGAAGTAAGTGTGACCACATCAAAAATAGTTACAGATGGCGATGCCAATACAGAGGAGCTATGCTTTCTCCGgtaggttgaacagcaagaagagcaggtgtactattcgggactacaattgc Alignment from Exonerate_protein2genome GAGACAAGAAGACAGAAGAAAACATTGAAGAAAACACGCAAGTTTATTGTCGATGGTGTAGAAGTGAGTGTGACGACATCGAAGATAGTTACAGACAGCGACTCCAAAACGGAGGAACTGCGCTTTCTCAG gctcatggcattcttacactacaattgactatctccctctttgctcctagGGAACACAAAGGCAGAGAAAAACACTCAAGAAGACACGCAAGTTTATTGTTGATGGTGAGGAAGTAAGTGTGACCACATCAAAAATAGTTACAGATGGCGATGCCAATACAGAGGAGCTATGCTTTCTCCGgtaggttgaacagcaagaagagcaggtgtactattcgggactacaattgc Alignment from Exonerate_coding2genome GAGACAAGAAGACAGAAGAAAACATTGAAGAAAACACGCAAGTTTATTGTCGATGGTGTAGAAGTGAGTGTGACGACATCGAAGATAGTTACAGACAGCGACTCCAAAACGGAGGAACTGCGCTTTCTCAG gctcatggcattcttacactacaattgactatctccctctttgctcctagGGAACACAAAGGCAGAGAAAAACACTCAAGAAGACACGCAAGTTTATTGTTGATGGTGAGGAAGTAAGTGTGACCACATCAAAAATAGTTACAGATGGCGATGCCAATACAGAGGAGCTATGCTTTCTCCGgtaggttgaacagcaagaagagcaggtgtactattcgggactacaattgc Alignment from GeneWise GAGACAAGAAGACAGAAGAAAACATTGAAGAAAACACGCAAGTTTATTGTCGATGGTGTAGAAGTGAGTGTGACGACATCGAAGATAGTTACAGACAGCGACTCCAAAACGGAGGAACTGCGCTTTCTCAG gctcatggcattcttacactacaattgactatctccctctttgctcctagGGAACACAAAGGCAGAGAAAAACACTCAAGAAGACACGCAAGTTTATTGTTGATGGTGAGGAAGTAAGTGTGACCACATCAAAAATAGTTACAGATGGCGATGCCAATACAGAGGAGCTATGCTTTCTCCGgtaggttgaacagcaagaagagcaggtgtactattcgggactacaattgc #### Slk_ID10263_15 --> 2 - 0 Original Alignment ctCGAGAAGCCGCAATTTGGGAGCTTGAAGAGCGACATTTACAAGAGAAGCACCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGCTAAAACGCCATGAGAAG gcaagttattagttaatataaaggggaattctaatttttccttaactcagctCGTGAAGCTGCAATTTGGGAGCTTGAAGAGCGACATTTACAGGAAAAGCATCAGCTGCTTAAACAGCAGCTCAAAGATCAGTACTTCATCCAGAGGCATCAGCTGTTAAAACGCTATGAGAAGgtacgtgtccaggattcctatgcgcactttaaagctatcctactaatgtg Alignment from CESAR ctCGAGAAGCCGCAATTTGGGAGCTTGAAGAGCGACATTTACAAGAGAAGCACCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGCTAAAACGCCATGAGAAG gcaagttattagttaatataaaggggaattctaatttttccttaactcagctCGTGAAGCTGCAATTTGGGAGCTTGAAGAGCGACATTTACAGGAAAAGCATCAGCTGCTTAAACAGCAGCTCAAAGATCAGTACTTCATCCAGAGGCATCAGCTGTTAAAACGCTATGAGAAGgtacgtgtccaggattcctatgcgcactttaaagctatcctactaatgtg Alignment from Spaln_aa2Genome CTCGAGAAGCCGCAATTTGGGAGCTTGAAGAGCGACATTTACAAGAGAAGCACCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGCTAAAACGCCATGAGAAG gcaagttattagttaatataaaggggaattctaatttttccttaactcagCTCGTGAAGCTGCAATTTGGGAGCTTGAAGAGCGACATTTACAGGAAAAGCATCAGCTGCTTAAACAGCAGCTCAAAGATCAGTACTTCATCCAGAGGCATCAGCTGTTAAAACGCTATGAGAAGgtacgtgtccaggattcctatgcgcactttaaagctatcctactaatgtg Alignment from Spaln_nt2Genome CTCGAGAAGCCGCAATTTGGGAGCTTGAAGAGCGACATTTACAAGAGAAGCACCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGCTAAAACGCCATGAGAAG gcaagttattagttaatataaaggggaattctaatttttccttaactcagCTCGTGAAGCTGCAATTTGGGAGCTTGAAGAGCGACATTTACAGGAAAAGCATCAGCTGCTTAAACAGCAGCTCAAAGATCAGTACTTCATCCAGAGGCATCAGCTGTTAAAACGCTATGAGAAGgtacgtgtccaggattcctatgcgcactttaaagctatcctactaatgtg Alignment from Pairagon CTCGAGAAGCCGCAATTTGGGAGCTTGAAGAGCGACATTTACAAGAGAAGCACCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGCTAAAACGCCATGAGAAG gcaagttattagttaatataaaggggaattctaatttttccttaactcagCTCGTGAAGCTGCAATTTGGGAGCTTGAAGAGCGACATTTACAGGAAAAGCATCAGCTGCTTAAACAGCAGCTCAAAGATCAGTACTTCATCCAGAGGCATCAGCTGTTAAAACGCTATGAGAAGgtacgtgtccaggattcctatgcgcactttaaagctatcctactaatgtg Alignment from Exonerate_protein2genome CTCGAGAAGCCGCAATTTGGGAGCTTGAAGAGCGACATTTACAAGAGAAGCACCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGCTAAAACGCCATGAGAAG gcaagttattagttaatataaaggggaattctaatttttccttaactcagCTCGTGAAGCTGCAATTTGGGAGCTTGAAGAGCGACATTTACAGGAAAAGCATCAGCTGCTTAAACAGCAGCTCAAAGATCAGTACTTCATCCAGAGGCATCAGCTGTTAAAACGCTATGAGAAGgtacgtgtccaggattcctatgcgcactttaaagctatcctactaatgtg Alignment from Exonerate_coding2genome CTCGAGAAGCCGCAATTTGGGAGCTTGAAGAGCGACATTTACAAGAGAAGCACCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGCTAAAACGCCATGAGAAG gcaagttattagttaatataaaggggaattctaatttttccttaactcagCTCGTGAAGCTGCAATTTGGGAGCTTGAAGAGCGACATTTACAGGAAAAGCATCAGCTGCTTAAACAGCAGCTCAAAGATCAGTACTTCATCCAGAGGCATCAGCTGTTAAAACGCTATGAGAAGgtacgtgtccaggattcctatgcgcactttaaagctatcctactaatgtg Alignment from GeneWise CTCGAGAAGCCGCAATTTGGGAGCTTGAAGAGCGACATTTACAAGAGAAGCACCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGCTAAAACGCCATGAGAAG gcaagttattagttaatataaaggggaattctaatttttccttaactcagCTCGTGAAGCTGCAATTTGGGAGCTTGAAGAGCGACATTTACAGGAAAAGCATCAGCTGCTTAAACAGCAGCTCAAAGATCAGTACTTCATCCAGAGGCATCAGCTGTTAAAACGCTATGAGAAGgtacgtgtccaggattcctatgcgcactttaaagctatcctactaatgtg #### Slk_ID10265_17 --> 0 - 0 Original Alignment TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG atcagtagagggaagatatatctctgtatttttgcttttgtgttttgcagTTTGCTGCACAAGACAAAAAGCGAAAAAAAAATAAAAGGATGTCTCAACATCAAAAACATGAAAGCCATATGCAGGACCTTCAGCTGCAATGTGAAGCTAATGTGCAGGAATTACATCAGTTGCCAgtaatttttctaaaactggagtgacaggaagtgcatttgtattgtttaac Alignment from CESAR TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG atcagtagagggaagatatatctctgtatttttgcttttgtgttttgcagTTTGCTGCACAAGACAAAAAGCGAAAAAAAAATAAAAGGATGTCTCAACATCAAAAACATGAAAGCCATATGCAGGACCTTCAGCTGCAATGTGAAGCTAATGTGCAGGAATTACATCAGTTGCCAgtaatttttctaaaactggagtgacaggaagtgcatttgtattgtttaac Alignment from Spaln_aa2Genome TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG atcagtagagggaagatatatctctgtatttttgcttttgtgttttgcagTTTGCTGCACAAGACAAAAAGCGAAAAAAAAATAAAAGGATGTCTCAACATCAAAAACATGAAAGCCATATGCAGGACCTTCAGCTGCAATGTGAAGCTAATGTGCAGGAATTACATCAGTTGCCAgtaatttttctaaaactggagtgacaggaagtgcatttgtattgtttaac Alignment from Spaln_nt2Genome TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG atcagtagagggaagatatatctctgtatttttgcttttgtgttttgcagTTTGCTGCACAAGACAAAAAGCGAAAAAAAAATAAAAGGATGTCTCAACATCAAAAACATGAAAGCCATATGCAGGACCTTCAGCTGCAATGTGAAGCTAATGTGCAGGAATTACATCAGTTGCCAgtaatttttctaaaactggagtgacaggaagtgcatttgtattgtttaac Alignment from Pairagon TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG atcagtagagggaagatatatctctgtatttttgcttttgtgttttgcagTTTGCTGCACAAGACAAAAAGCGAAAAAAAAATAAAAGGATGTCTCAACATCAAAAACATGAAAGCCATATGCAGGACCTTCAGCTGCAATGTGAAGCTAATGTGCAGGAATTACATCAGTTGCCAgtaatttttctaaaactggagtgacaggaagtgcatttgtattgtttaac Alignment from Exonerate_protein2genome TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG atcagtagagggaagatatatctctgtatttttgcttttgtgttttgcagTTTGCTGCACAAGACAAAAAGCGAAAAAAAAATAAAAGGATGTCTCAACATCAAAAACATGAAAGCCATATGCAGGACCTTCAGCTGCAATGTGAAGCTAATGTGCAGGAATTACATCAGTTGCCAgtaatttttctaaaactggagtgacaggaagtgcatttgtattgtttaac Alignment from Exonerate_coding2genome TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG atcagtagagggaagatatatctctgtatttttgcttttgtgttttgcagTTTGCTGCACAAGACAAAAAGCGAAAAAAAAATAAAAGGATGTCTCAACATCAAAAACATGAAAGCCATATGCAGGACCTTCAGCTGCAATGTGAAGCTAATGTGCAGGAATTACATCAGTTGCCAgtaatttttctaaaactggagtgacaggaagtgcatttgtattgtttaac Alignment from GeneWise TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG atcagtagagggaagatatatctctgtatttttgcttttgtgttttgcagTTTGCTGCACAAGACAAAAAGCGAAAAAAAAATAAAAGGATGTCTCAACATCAAAAACATGAAAGCCATATGCAGGACCTTCAGCTGCAATGTGAAGCTAATGTGCAGGAATTACATCAGTTGCCAgtaatttttctaaaactggagtgacaggaagtgcatttgtattgtttaac #### Smarca2_ID5712_2 --> 0 - 1 Original Alignment CCCATGGATGGGATACATGACAAAGGGATTGTAGAAGATGTCCACTGTGGATCCATGAAGGGCACCAGCATGCGCCCCCCACACCCAGGAATGGGCCCTCCACAGAGCCCCATGGACCAGCACAGCCAAg ggaattctggctggtcacacgtagacacctccttgtccctttccacacagCCAATGGATGGGATACATGACAAGGGCATTGTAGAGGATGTCCATTGTGGATCTATGAAGGGTGCAAGCATGTGCCCCCCACACCCCGGGATGGGCCCTCCACAGAGTCCTATGGACCAGCACAGCCAAcgtacagtgtcagggggcacaagtgccaaagagaacataatttttaaacga Alignment from CESAR CCCATGGATGGGATACATGACAAAGGGATTGTAGAAGATGTCCACTGTGGATCCATGAAGGGCACCAGCATGCGCCCCCCACACCCAGGAATGGGCCCTCCACAGAGCCCCATGGACCAGCACAGCCAAg ggaattctggctggtcacacgtagacacctccttgtccctttccacacagCCAATGGATGGGATACATGACAAGGGCATTGTAGAGGATGTCCATTGTGGATCTATGAAGGGTGCAAGCATGTGCCCCCCACACCCCGGGATGGGCCCTCCACAGAGTCCTATGGACCAGCACAGCCAAcgtacagtgtcagggggcacaagtgccaaagagaacataatttttaaacga Alignment from Spaln_aa2Genome CCCATGGATGGGATACATGACAAAGGGATTGTAGAAGATGTCCACTGTGGATCCATGAAGGGCACCAGCATGCGCCCCCCACACCCAGGAATGGGCCCTCCACAGAGCCCCATGGACCAGCACAGCCAAG ggaattctggctggtcacacgtagacacctccttgtccctttccacacagCCAATGGATGGGATACATGACAAGGGCATTGTAGAGGATGTCCATTGTGGATCTATGAAGGGTGCAAGCATGTGCCCCCCACACCCCGGGATGGGCCCTCCACAGAGTCCTATGGACCAGCACAGCCAACgtacagtgtcagggggcacaagtgccaaagagaacataatttttaaacga Alignment from Spaln_nt2Genome CCCATGGATGGGATACATGACAAAGGGATTGTAGAAGATGTCCACTGTGGATCCATGAAGGGCACCAGCATGCGCCCCCCACACCCAGGAATGGGCCCTCCACAGAGCCCCATGGACCAGCACAGCCAAG ggaattctggctggtcacacgtagacacctccttgtccctttccacacagCCAATGGATGGGATACATGACAAGGGCATTGTAGAGGATGTCCATTGTGGATCTATGAAGGGTGCAAGCATGTGCCCCCCACACCCCGGGATGGGCCCTCCACAGAGTCCTATGGACCAGCACAGCCAACgtacagtgtcagggggcacaagtgccaaagagaacataatttttaaacga Alignment from Pairagon CCCATGGATGGGATACATGACAAAGGGATTGTAGAAGATGTCCACTGTGGATCCATGAAGGGCACCAGCATGCGCCCCCCACACCCAGGAATGGGCCCTCCACAGAGCCCCATGGACCAGCACAGCCAAG ggaattctggctggtcacacgtagacacctccttgtccctttccacacagCCAATGGATGGGATACATGACAAGGGCATTGTAGAGGATGTCCATTGTGGATCTATGAAGGGTGCAAGCATGTGCCCCCCACACCCCGGGATGGGCCCTCCACAGAGTCCTATGGACCAGCACAGCCAACgtacagtgtcagggggcacaagtgccaaagagaacataatttttaaacga Alignment from Exonerate_protein2genome CCCATGGATGGGATACATGACAAAGGGATTGTAGAAGATGTCCACTGTGGATCCATGAAGGGCACCAGCATGCGCCCCCCACACCCAGGAATGGGCCCTCCACAGAGCCCCATGGACCAGCACAGCCAAG ggaattctggctggtcacacgtagacacctccttgtccctttccacacagCCAATGGATGGGATACATGACAAGGGCATTGTAGAGGATGTCCATTGTGGATCTATGAAGGGTGCAAGCATGTGCCCCCCACACCCCGGGATGGGCCCTCCACAGAGTCCTATGGACCAGCACAGCCAACgtacagtgtcagggggcacaagtgccaaagagaacataatttttaaacga Alignment from Exonerate_coding2genome CCCATGGATGGGATACATGACAAAGGGATTGTAGAAGATGTCCACTGTGGATCCATGAAGGGCACCAGCATGCGCCCCCCACACCCAGGAATGGGCCCTCCACAGAGCCCCATGGACCAGCACAGCCAAG ggaattctggctggtcacacgtagacacctccttgtccctttccacacagCCAATGGATGGGATACATGACAAGGGCATTGTAGAGGATGTCCATTGTGGATCTATGAAGGGTGCAAGCATGTGCCCCCCACACCCCGGGATGGGCCCTCCACAGAGTCCTATGGACCAGCACAGCCAACgtacagtgtcagggggcacaagtgccaaagagaacataatttttaaacga Alignment from GeneWise CCCATGGATGGGATACATGACAAAGGGATTGTAGAAGATGTCCACTGTGGATCCATGAAGGGCACCAGCATGCGCCCCCCACACCCAGGAATGGGCCCTCCACAGAGCCCCATGGACCAGCACAGCCAAG ggaattctggctggtcacacgtagacacctccttgtccctttccacacagCCAATGGATGGGATACATGACAAGGGCATTGTAGAGGATGTCCATTGTGGATCTATGAAGGGTGCAAGCATGTGCCCCCCACACCCCGGGATGGGCCCTCCACAGAGTCCTATGGACCAGCACAGCCAACgtacagtgtcagggggcacaagtgccaaagagaacataatttttaaacga #### Smarca2_ID5720_5 --> 1 - 0 Original Alignment aCTTCAAGCTCGCATCGCTCATAGGATACAAGAACTGGAAAGTCTGCCTGGTTCCTTGCCACCAGATTTACGCACCAAAGCAACCGTGGAACTGAAAGCACTTCGCTTACTCAACTTCCAACGTCAG catgttgtcatgtccagcccatacaagctaacagtccagtgtcctctcaggTTGCAAGCTCACATTGCACACAGAGTACAGGAGCTTGATAGCCTTCTTGGTTCCCTGCCAGCAGATTTACATACTGAAGCCACAGTAGAACTGAAGGCTCTTCACTTACTCAACTTCCTATGCCAGgtacccgtgcactaatgtaacttttttaaatagtgcaccaaggagtcact Alignment from CESAR aCTTCAAGCTCGCATCGCTCATAGGATACAAGAACTGGAAAGTCTGCCTGGTTCCTTGCCACCAGATTTACGCACCAAAGCAACCGTGGAACTGAAAGCACTTCGCTTACTCAACTTCCAACGTCAG catgttgtcatgtccagcccatacaagctaacagtccagtgtcctctcaggTTGCAAGCTCACATTGCACACAGAGTACAGGAGCTTGATAGCCTTCTTGGTTCCCTGCCAGCAGATTTACATACTGAAGCCACAGTAGAACTGAAGGCTCTTCACTTACTCAACTTCCTATGCCAGgtacccgtgcactaatgtaacttttttaaatagtgcaccaaggagtcact Alignment from Spaln_aa2Genome ACTTCAAGCTCGCATCGCTCATAGGATACAAGAACTGGAAAGTCTGCCTGGTTCCTTGCCACCAGATTTACGCACCAAAGCAACCGTGGAACTGAAAGCACTTCGCTTACTCAACTTCCAACGTCAG catgttgtcatgtccagcccatacaagctaacagtccagtgtcctctcagGTTGCAAGCTCACATTGCACACAGAGTACAGGAGCTTGATAGCCTTCTTGGTTCCCTGCCAGCAGATTTACATACTGAAGCCACAGTAGAACTGAAGGCTCTTCACTTACTCAACTTCCTATGCCAGgtacccgtgcactaatgtaacttttttaaatagtgcaccaaggagtcact Alignment from Spaln_nt2Genome ACTTCAAGCTCGCATCGCTCATAGGATACAAGAACTGGAAAGTCTGCCTGGTTCCTTGCCACCAGATTTACGCACCAAAGCAACCGTGGAACTGAAAGCACTTCGCTTACTCAACTTCCAACGTCAG catgttgtcatgtccagcccatacaagctaacagtccagtgtcctctcagGTTGCAAGCTCACATTGCACACAGAGTACAGGAGCTTGATAGCCTTCTTGGTTCCCTGCCAGCAGATTTACATACTGAAGCCACAGTAGAACTGAAGGCTCTTCACTTACTCAACTTCCTATGCCAGgtacccgtgcactaatgtaacttttttaaatagtgcaccaaggagtcact Alignment from Pairagon ACTTCAAGCTCGCATCGCTCATAGGATACAAGAACTGGAAAGTCTGCCTGGTTCCTTGCCACCAGATTTACGCACCAAAGCAACCGTGGAACTGAAAGCACTTCGCTTACTCAACTTCCAACGTCAG catgttgtcatgtccagcccatacaagctaacagtccagtgtcctctcagGTTGCAAGCTCACATTGCACACAGAGTACAGGAGCTTGATAGCCTTCTTGGTTCCCTGCCAGCAGATTTACATACTGAAGCCACAGTAGAACTGAAGGCTCTTCACTTACTCAACTTCCTATGCCAGgtacccgtgcactaatgtaacttttttaaatagtgcaccaaggagtcact Alignment from Exonerate_protein2genome ACTTCAAGCTCGCATCGCTCATAGGATACAAGAACTGGAAAGTCTGCCTGGTTCCTTGCCACCAGATTTACGCACCAAAGCAACCGTGGAACTGAAAGCACTTCGCTTACTCAACTTCCAACGTCAG catgttgtcatgtccagcccatacaagctaacagtccagtgtcctctcagGTTGCAAGCTCACATTGCACACAGAGTACAGGAGCTTGATAGCCTTCTTGGTTCCCTGCCAGCAGATTTACATACTGAAGCCACAGTAGAACTGAAGGCTCTTCACTTACTCAACTTCCTATGCCAGgtacccgtgcactaatgtaacttttttaaatagtgcaccaaggagtcact Alignment from Exonerate_coding2genome ACTTCAAGCTCGCATCGCTCATAGGATACAAGAACTGGAAAGTCTGCCTGGTTCCTTGCCACCAGATTTACGCACCAAAGCAACCGTGGAACTGAAAGCACTTCGCTTACTCAACTTCCAACGTCAG catgttgtcatgtccagcccatacaagctaacagtccagtgtcctctcagGTTGCAAGCTCACATTGCACACAGAGTACAGGAGCTTGATAGCCTTCTTGGTTCCCTGCCAGCAGATTTACATACTGAAGCCACAGTAGAACTGAAGGCTCTTCACTTACTCAACTTCCTATGCCAGgtacccgtgcactaatgtaacttttttaaatagtgcaccaaggagtcact Alignment from GeneWise ACTTCAAGCTCGCATCGCTCATAGGATACAAGAACTGGAAAGTCTGCCTGGTTCCTTGCCACCAGATTTACGCACCAAAGCAACCGTGGAACTGAAAGCACTTCGCTTACTCAACTTCCAACGTCAG catgttgtcatgtccagcccatacaagctaacagtccagtgtcctctcagGTTGCAAGCTCACATTGCACACAGAGTACAGGAGCTTGATAGCCTTCTTGGTTCCCTGCCAGCAGATTTACATACTGAAGCCACAGTAGAACTGAAGGCTCTTCACTTACTCAACTTCCTATGCCAGgtacccgtgcactaatgtaacttttttaaatagtgcaccaaggagtcact #### Smarca2_ID5722_7 --> 0 - 0 Original Alignment GAATACCTGAACAGTATTTTGCAACATGCAAAAGATTTTAAGGAATATCACCGGTCTGTGGCCGGGAAGATCCAGAAGCTCTCCAAAGCAGTGGCGACTTGGCATGCTAACACAGAAAGGGAGCAGAAGAAGGAGACGGAGCGGATCGAGAAGGAGAGAATGCGGAGGCTGATG attaaggttttataacatgcccaggattcagctcctgcatgtccctgcagGAATACCTCAACAGTATTTTGCAACATGCACAGGATTTTAAAGAATATCATCGATCTGTGGCTGGCAAGATCCAGAAGCTTTCCAAAGCAGTGGCCACTTGGCATGCTAACACAGAAAGAGAGCAGAGGAAGGAGACAGAGCGAATAGAGAAGGAGAGAATGCAGAGGCTAATGgtgagtcagatccagatgcacacatcttggatgtgttcacacactgctgc Alignment from CESAR GAATACCTGAACAGTATTTTGCAACATGCAAAAGATTTTAAGGAATATCACCGGTCTGTGGCCGGGAAGATCCAGAAGCTCTCCAAAGCAGTGGCGACTTGGCATGCTAACACAGAAAGGGAGCAGAAGAAGGAGACGGAGCGGATCGAGAAGGAGAGAATGCGGAGGCTGATG attaaggttttataacatgcccaggattcagctcctgcatgtccctgcagGAATACCTCAACAGTATTTTGCAACATGCACAGGATTTTAAAGAATATCATCGATCTGTGGCTGGCAAGATCCAGAAGCTTTCCAAAGCAGTGGCCACTTGGCATGCTAACACAGAAAGAGAGCAGAGGAAGGAGACAGAGCGAATAGAGAAGGAGAGAATGCAGAGGCTAATGgtgagtcagatccagatgcacacatcttggatgtgttcacacactgctgc Alignment from Spaln_aa2Genome GAATACCTGAACAGTATTTTGCAACATGCAAAAGATTTTAAGGAATATCACCGGTCTGTGGCCGGGAAGATCCAGAAGCTCTCCAAAGCAGTGGCGACTTGGCATGCTAACACAGAAAGGGAGCAGAAGAAGGAGACGGAGCGGATCGAGAAGGAGAGAATGCGGAGGCTGATG attaaggttttataacatgcccaggattcagctcctgcatgtccctgcagGAATACCTCAACAGTATTTTGCAACATGCACAGGATTTTAAAGAATATCATCGATCTGTGGCTGGCAAGATCCAGAAGCTTTCCAAAGCAGTGGCCACTTGGCATGCTAACACAGAAAGAGAGCAGAGGAAGGAGACAGAGCGAATAGAGAAGGAGAGAATGCAGAGGCTAATGgtgagtcagatccagatgcacacatcttggatgtgttcacacactgctgc Alignment from Spaln_nt2Genome GAATACCTGAACAGTATTTTGCAACATGCAAAAGATTTTAAGGAATATCACCGGTCTGTGGCCGGGAAGATCCAGAAGCTCTCCAAAGCAGTGGCGACTTGGCATGCTAACACAGAAAGGGAGCAGAAGAAGGAGACGGAGCGGATCGAGAAGGAGAGAATGCGGAGGCTGATG attaaggttttataacatgcccaggattcagctcctgcatgtccctgcagGAATACCTCAACAGTATTTTGCAACATGCACAGGATTTTAAAGAATATCATCGATCTGTGGCTGGCAAGATCCAGAAGCTTTCCAAAGCAGTGGCCACTTGGCATGCTAACACAGAAAGAGAGCAGAGGAAGGAGACAGAGCGAATAGAGAAGGAGAGAATGCAGAGGCTAATGgtgagtcagatccagatgcacacatcttggatgtgttcacacactgctgc Alignment from Pairagon GAATACCTGAACAGTATTTTGCAACATGCAAAAGATTTTAAGGAATATCACCGGTCTGTGGCCGGGAAGATCCAGAAGCTCTCCAAAGCAGTGGCGACTTGGCATGCTAACACAGAAAGGGAGCAGAAGAAGGAGACGGAGCGGATCGAGAAGGAGAGAATGCGGAGGCTGATG attaaggttttataacatgcccaggattcagctcctgcatgtccctgcagGAATACCTCAACAGTATTTTGCAACATGCACAGGATTTTAAAGAATATCATCGATCTGTGGCTGGCAAGATCCAGAAGCTTTCCAAAGCAGTGGCCACTTGGCATGCTAACACAGAAAGAGAGCAGAGGAAGGAGACAGAGCGAATAGAGAAGGAGAGAATGCAGAGGCTAATGgtgagtcagatccagatgcacacatcttggatgtgttcacacactgctgc Alignment from Exonerate_protein2genome GAATACCTGAACAGTATTTTGCAACATGCAAAAGATTTTAAGGAATATCACCGGTCTGTGGCCGGGAAGATCCAGAAGCTCTCCAAAGCAGTGGCGACTTGGCATGCTAACACAGAAAGGGAGCAGAAGAAGGAGACGGAGCGGATCGAGAAGGAGAGAATGCGGAGGCTGATG attaaggttttataacatgcccaggattcagctcctgcatgtccctgcagGAATACCTCAACAGTATTTTGCAACATGCACAGGATTTTAAAGAATATCATCGATCTGTGGCTGGCAAGATCCAGAAGCTTTCCAAAGCAGTGGCCACTTGGCATGCTAACACAGAAAGAGAGCAGAGGAAGGAGACAGAGCGAATAGAGAAGGAGAGAATGCAGAGGCTAATGgtgagtcagatccagatgcacacatcttggatgtgttcacacactgctgc Alignment from Exonerate_coding2genome GAATACCTGAACAGTATTTTGCAACATGCAAAAGATTTTAAGGAATATCACCGGTCTGTGGCCGGGAAGATCCAGAAGCTCTCCAAAGCAGTGGCGACTTGGCATGCTAACACAGAAAGGGAGCAGAAGAAGGAGACGGAGCGGATCGAGAAGGAGAGAATGCGGAGGCTGATG attaaggttttataacatgcccaggattcagctcctgcatgtccctgcagGAATACCTCAACAGTATTTTGCAACATGCACAGGATTTTAAAGAATATCATCGATCTGTGGCTGGCAAGATCCAGAAGCTTTCCAAAGCAGTGGCCACTTGGCATGCTAACACAGAAAGAGAGCAGAGGAAGGAGACAGAGCGAATAGAGAAGGAGAGAATGCAGAGGCTAATGgtgagtcagatccagatgcacacatcttggatgtgttcacacactgctgc Alignment from GeneWise GAATACCTGAACAGTATTTTGCAACATGCAAAAGATTTTAAGGAATATCACCGGTCTGTGGCCGGGAAGATCCAGAAGCTCTCCAAAGCAGTGGCGACTTGGCATGCTAACACAGAAAGGGAGCAGAAGAAGGAGACGGAGCGGATCGAGAAGGAGAGAATGCGGAGGCTGATG attaaggttttataacatgcccaggattcagctcctgcatgtccctgcagGAATACCTCAACAGTATTTTGCAACATGCACAGGATTTTAAAGAATATCATCGATCTGTGGCTGGCAAGATCCAGAAGCTTTCCAAAGCAGTGGCCACTTGGCATGCTAACACAGAAAGAGAGCAGAGGAAGGAGACAGAGCGAATAGAGAAGGAGAGAATGCAGAGGCTAATGgtgagtcagatccagatgcacacatcttggatgtgttcacacactgctgc #### Smarca2_ID5724_8 --> 0 - 0 Original Alignment GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG aacaatattaaagggggccaggcagaatttttgattctttttttcaatagGCTGAAGATGAAGAGGGGTACAGGAAGCTAATTGACCAAAAGAAAGATAGACGTCTCGCATACCTCTTGCAACAGACTGATGAGTATGTTGCCAATCTCACAAACCTAGTATGGGAGCACAAGCAAGCCCAAGCAGCCAAAGAGAAGAAGAAAAGGAGAAGGAGGAAGAAAgtcagtagaatctgtgtctatgttccacaggttttatgtttgcctcttct Alignment from CESAR GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG aacaatattaaagggggccaggcagaatttttgattctttttttcaatagGCTGAAGATGAAGAGGGGTACAGGAAGCTAATTGACCAAAAGAAAGATAGACGTCTCGCATACCTCTTGCAACAGACTGATGAGTATGTTGCCAATCTCACAAACCTAGTATGGGAGCACAAGCAAGCCCAAGCAGCCAAAGAGAAGAAGAAAAGGAGAAGGAGGAAGAAAgtcagtagaatctgtgtctatgttccacaggttttatgtttgcctcttct Alignment from Spaln_aa2Genome GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG aacaatattaaagggggccaggcagaatttttgattctttttttcaatagGCTGAAGATGAAGAGGGGTACAGGAAGCTAATTGACCAAAAGAAAGATAGACGTCTCGCATACCTCTTGCAACAGACTGATGAGTATGTTGCCAATCTCACAAACCTAGTATGGGAGCACAAGCAAGCCCAAGCAGCCAAAGAGAAGAAGAAAAGGAGAAGGAGGAAGAAAgtcagtagaatctgtgtctatgttccacaggttttatgtttgcctcttct Alignment from Spaln_nt2Genome GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG aacaatattaaagggggccaggcagaatttttgattctttttttcaatagGCTGAAGATGAAGAGGGGTACAGGAAGCTAATTGACCAAAAGAAAGATAGACGTCTCGCATACCTCTTGCAACAGACTGATGAGTATGTTGCCAATCTCACAAACCTAGTATGGGAGCACAAGCAAGCCCAAGCAGCCAAAGAGAAGAAGAAAAGGAGAAGGAGGAAGAAAgtcagtagaatctgtgtctatgttccacaggttttatgtttgcctcttct Alignment from Pairagon GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG aacaatattaaagggggccaggcagaatttttgattctttttttcaatagGCTGAAGATGAAGAGGGGTACAGGAAGCTAATTGACCAAAAGAAAGATAGACGTCTCGCATACCTCTTGCAACAGACTGATGAGTATGTTGCCAATCTCACAAACCTAGTATGGGAGCACAAGCAAGCCCAAGCAGCCAAAGAGAAGAAGAAAAGGAGAAGGAGGAAGAAAgtcagtagaatctgtgtctatgttccacaggttttatgtttgcctcttct Alignment from Exonerate_protein2genome GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG aacaatattaaagggggccaggcagaatttttgattctttttttcaatagGCTGAAGATGAAGAGGGGTACAGGAAGCTAATTGACCAAAAGAAAGATAGACGTCTCGCATACCTCTTGCAACAGACTGATGAGTATGTTGCCAATCTCACAAACCTAGTATGGGAGCACAAGCAAGCCCAAGCAGCCAAAGAGAAGAAGAAAAGGAGAAGGAGGAAGAAAgtcagtagaatctgtgtctatgttccacaggttttatgtttgcctcttct Alignment from Exonerate_coding2genome GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG aacaatattaaagggggccaggcagaatttttgattctttttttcaatagGCTGAAGATGAAGAGGGGTACAGGAAGCTAATTGACCAAAAGAAAGATAGACGTCTCGCATACCTCTTGCAACAGACTGATGAGTATGTTGCCAATCTCACAAACCTAGTATGGGAGCACAAGCAAGCCCAAGCAGCCAAAGAGAAGAAGAAAAGGAGAAGGAGGAAGAAAgtcagtagaatctgtgtctatgttccacaggttttatgtttgcctcttct Alignment from GeneWise GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG aacaatattaaagggggccaggcagaatttttgattctttttttcaatagGCTGAAGATGAAGAGGGGTACAGGAAGCTAATTGACCAAAAGAAAGATAGACGTCTCGCATACCTCTTGCAACAGACTGATGAGTATGTTGCCAATCTCACAAACCTAGTATGGGAGCACAAGCAAGCCCAAGCAGCCAAAGAGAAGAAGAAAAGGAGAAGGAGGAAGAAAgtcagtagaatctgtgtctatgttccacaggttttatgtttgcctcttct #### Smarca2_ID5729_11 --> 1 - 0 Original Alignment tTACGAAGTTGCACCCAGATCTGACAGTGAAGAGAGTGAATCGGACTACGAGGAGGAG ccaggctggcccccattctctgtccagttatgccttctctctccctctagtTTCAGAGTTGGACCTAGATCAGATAGTGAAGAGAGTGAATCAGACTACGAGGAGGAGgtaactagtactgctttgtgggagtaaatgaagcaacattcaaggactgg Alignment from CESAR tTACGAAGTTGCACCCAGATCTGACAGTGAAGAGAGTGAATCGGACTACGAGGAGGAG ccaggctggcccccattctctgtccagttatgccttctctctccctctagtTTCAGAGTTGGACCTAGATCAGATAGTGAAGAGAGTGAATCAGACTACGAGGAGGAGgtaactagtactgctttgtgggagtaaatgaagcaacattcaaggactgg Alignment from Spaln_aa2Genome TTACGAAGTTGCACCCAGATCTGACAGTGAAGAGAGTGAATCGGACTACGAGGAGGAG ccaggctggcccccattctctgtccagttatgccttctctctccctctagTTTCAGAGTTGGACCTAGATCAGATAGTGAAGAGAGTGAATCAGACTACGAGGAGGAGgtaactagtactgctttgtgggagtaaatgaagcaacattcaaggactgg Alignment from Spaln_nt2Genome TTACGAAGTTGCACCCAGATCTGACAGTGAAGAGAGTGAATCGGACTACGAGGAGGAG ccaggctggcccccattctctgtccagttatgccttctctctccctctagTTTCAGAGTTGGACCTAGATCAGATAGTGAAGAGAGTGAATCAGACTACGAGGAGGAGgtaactagtactgctttgtgggagtaaatgaagcaacattcaaggactgg Alignment from Pairagon TTACGAAGTTGCACCCAGATCTGACAGTGAAGAGAGTGAATCGGACTACGAGGAGGAG ccaggctggcccccattctctgtccagttatgccttctctctccctctagTTTCAGAGTTGGACCTAGATCAGATAGTGAAGAGAGTGAATCAGACTACGAGGAGGAGgtaactagtactgctttgtgggagtaaatgaagcaacattcaaggactgg Alignment from Exonerate_protein2genome TTACGAAGTTGCACCCAGATCTGACAGTGAAGAGAGTGAATCGGACTACGAGGAGGAG ccaggctggcccccattctctgtccagttatgccttctctctccctctagTTTCAGAGTTGGACCTAGATCAGATAGTGAAGAGAGTGAATCAGACTACGAGGAGGAGgtaactagtactgctttgtgggagtaaatgaagcaacattcaaggactgg Alignment from Exonerate_coding2genome TTACGAAGTTGCACCCAGATCTGACAGTGAAGAGAGTGAATCGGACTACGAGGAGGAG ccaggctggcccccattctctgtccagttatgccttctctctccctctagTTTCAGAGTTGGACCTAGATCAGATAGTGAAGAGAGTGAATCAGACTACGAGGAGGAGgtaactagtactgctttgtgggagtaaatgaagcaacattcaaggactgg Alignment from GeneWise TTACGAAGTTGCACCCAGATCTGACAGTGAAGAGAGTGAATCGGACTACGAGGAGGAG ccaggctggcccccattctctgtccagttatgccttctctctccctctagTTTCAGAGTTGGACCTAGATCAGATAGTGAAGAGAGTGAATCAGACTACGAGGAGGAGgtaactagtactgctttgtgggagtaaatgaagcaacattcaaggactgg #### Smarca2_ID5739_17 --> 0 - 0 Original Alignment ATTCGGTGGAAGTACATGATCGTGGACGAAGGCCACCGGATGAAGAATCACCACTGCAAGCTAACCCAGGTCCTGAACACACACTATGTGGCCCCCAGGCGGATCCTTCTGACTGGGACCCCACTGCAGAATAAGCTTCCGGAACTCTGGGCCCTCCTCAACTTCCTCCTCCCTACAATCTTCAAGAGTTGCAGCACATTTGAGCAGTGGTTTAATGCTCCATTTGCCATGACCGGTGAAAGG aatcactcatcatgcattaacacaacatattttgttcttgtttttcttagATTCGCTGGAAGTACATGATTGTCGATGATGGTCACAGAATGAAGAATCACCACTGCAAGCTGACTCAAGTGTTTAACACACATTATGTGGCCCCAAGGCAAATTCTGCTGTCTGGGACTCCACAGCAAAACAAGCTCCCTAAGCTG---GCACTCCTCAATTTCCTTCTACCTACAATTTTCAAGAGTTACAGTGCGTTTGAGCAGTGGTTTAATGCCCCCTTTGCCATGACTGGTGAGAAAgtaagtgccaaccaggaatcatccaggaatcatatcatggactggggact Alignment from CESAR ATTCGGTGGAAGTACATGATCGTGGACGAAGGCCACCGGATGAAGAATCACCACTGCAAGCTAACCCAGGTCCTGAACACACACTATGTGGCCCCCAGGCGGATCCTTCTGACTGGGACCCCACTGCAGAATAAGCTTCCGGAACTCTGGGCCCTCCTCAACTTCCTCCTCCCTACAATCTTCAAGAGTTGCAGCACATTTGAGCAGTGGTTTAATGCTCCATTTGCCATGACCGGTGAAAGG aatcactcatcatgcattaacacaacatattttgttcttgtttttcttagATTCGCTGGAAGTACATGATTGTCGATGATGGTCACAGAATGAAGAATCACCACTGCAAGCTGACTCAAGTGTTTAACACACATTATGTGGCCCCAAGGCAAATTCTGCTGTCTGGGACTCCACAGCAAAACAAGCTCCCTAAGCTG---GCACTCCTCAATTTCCTTCTACCTACAATTTTCAAGAGTTACAGTGCGTTTGAGCAGTGGTTTAATGCCCCCTTTGCCATGACTGGTGAGAAAgtaagtgccaaccaggaatcatccaggaatcatatcatggactggggact Alignment from Spaln_aa2Genome ATTCGGTGGAAGTACATGATCGTGGACGAAGGCCACCGGATGAAGAATCACCACTGCAAGCTAACCCAGGTCCTGAACACACACTATGTGGCCCCCAGGCGGATCCTTCTGACTGGGACCCCACTGCAGAATAAGCTTCCGGAACTCTGGGCCCTCCTCAACTTCCTCCTCCCTACAATCTTCAAGAGTTGCAGCACATTTGAGCAGTGGTTTAATGCTCCATTTGCCATGACCGGTGAAAGG aatcactcatcatgcattaacacaacatattttgttcttgtttttcttagATTCGCTGGAAGTACATGATTGTCGATGATGGTCACAGAATGAAGAATCACCACTGCAAGCTGACTCAAGTGTTTAACACACATTATGTGGCCCCAAGGCAAATTCTGCTGTCTGGGACTCCACAGCAAAACAAGCTCCCTAAGCTG---GCACTCCTCAATTTCCTTCTACCTACAATTTTCAAGAGTTACAGTGCGTTTGAGCAGTGGTTTAATGCCCCCTTTGCCATGACTGGTGAGAAAgtaagtgccaaccaggaatcatccaggaatcatatcatggactggggact Alignment from Spaln_nt2Genome ATTCGGTGGAAGTACATGATCGTGGACGAAGGCCACCGGATGAAGAATCACCACTGCAAGCTAACCCAGGTCCTGAACACACACTATGTGGCCCCCAGGCGGATCCTTCTGACTGGGACCCCACTGCAGAATAAGCTTCCGGAACTCTGGGCCCTCCTCAACTTCCTCCTCCCTACAATCTTCAAGAGTTGCAGCACATTTGAGCAGTGGTTTAATGCTCCATTTGCCATGACCGGTGAAAGG aatcactcatcatgcattaacacaacatattttgttcttgtttttcttagATTCGCTGGAAGTACATGATTGTCGATGATGGTCACAGAATGAAGAATCACCACTGCAAGCTGACTCAAGTGTTTAACACACATTATGTGGCCCCAAGGCAAATTCTGCTGTCTGGGACTCCACAGCAAAACAAGCTCCCTAAGCT---GGCACTCCTCAATTTCCTTCTACCTACAATTTTCAAGAGTTACAGTGCGTTTGAGCAGTGGTTTAATGCCCCCTTTGCCATGACTGGTGAGAAAgtaagtgccaaccaggaatcatccaggaatcatatcatggactggggact Alignment from Pairagon ATTCGGTGGAAGTACATGATCGTGGACGAAGGCCACCGGATGAAGAATCACCACTGCAAGCTAACCCAGGTCCTGAACACACACTATGTGGCCCCCAGGCGGATCCTTCTGACTGGGACCCCACTGCAGAATAAGCTTCCGGAACTCTGGGCCCTCCTCAACTTCCTCCTCCCTACAATCTTCAAGAGTTGCAGCACATTTGAGCAGTGGTTTAATGCTCCATTTGCCATGACCGGTGAAAGG aatcactcatcatgcattaacacaacatattttgttcttgtttttcttagATTCGCTGGAAGTACATGATTGTCGATGATGGTCACAGAATGAAGAATCACCACTGCAAGCTGACTCAAGTGTTTAACACACATTATGTGGCCCCAAGGCAAATTCTGCTGTCTGGGACTCCACAGCAAAACAAGCTCCCTAAGCT---GGCACTCCTCAATTTCCTTCTACCTACAATTTTCAAGAGTTACAGTGCGTTTGAGCAGTGGTTTAATGCCCCCTTTGCCATGACTGGTGAGAAAgtaagtgccaaccaggaatcatccaggaatcatatcatggactggggact Alignment from Exonerate_protein2genome ATTCGGTGGAAGTACATGATCGTGGACGAAGGCCACCGGATGAAGAATCACCACTGCAAGCTAACCCAGGTCCTGAACACACACTATGTGGCCCCCAGGCGGATCCTTCTGACTGGGACCCCACTGCAGAATAAGCTTCCGGAACTCTGGGCCCTCCTCAACTTCCTCCTCCCTACAATCTTCAAGAGTTGCAGCACATTTGAGCAGTGGTTTAATGCTCCATTTGCCATGACCGGTGAAAGG aatcactcatcatgcattaacacaacatattttgttcttgtttttcttagATTCGCTGGAAGTACATGATTGTCGATGATGGTCACAGAATGAAGAATCACCACTGCAAGCTGACTCAAGTGTTTAACACACATTATGTGGCCCCAAGGCAAATTCTGCTGTCTGGGACTCCACAGCAAAACAAGCTCCCTAAGCTG---GCACTCCTCAATTTCCTTCTACCTACAATTTTCAAGAGTTACAGTGCGTTTGAGCAGTGGTTTAATGCCCCCTTTGCCATGACTGGTGAGAAAgtaagtgccaaccaggaatcatccaggaatcatatcatggactggggact Alignment from Exonerate_coding2genome ATTCGGTGGAAGTACATGATCGTGGACGAAGGCCACCGGATGAAGAATCACCACTGCAAGCTAACCCAGGTCCTGAACACACACTATGTGGCCCCCAGGCGGATCCTTCTGACTGGGACCCCACTGCAGAATAAGCTTCCGGAACTCTGGGCCCTCCTCAACTTCCTCCTCCCTACAATCTTCAAGAGTTGCAGCACATTTGAGCAGTGGTTTAATGCTCCATTTGCCATGACCGGTGAAAGG aatcactcatcatgcattaacacaacatattttgttcttgtttttcttagATTCGCTGGAAGTACATGATTGTCGATGATGGTCACAGAATGAAGAATCACCACTGCAAGCTGACTCAAGTGTTTAACACACATTATGTGGCCCCAAGGCAAATTCTGCTGTCTGGGACTCCACAGCAAAACAAGCTCCCTAAGCTG---GCACTCCTCAATTTCCTTCTACCTACAATTTTCAAGAGTTACAGTGCGTTTGAGCAGTGGTTTAATGCCCCCTTTGCCATGACTGGTGAGAAAgtaagtgccaaccaggaatcatccaggaatcatatcatggactggggact Alignment from GeneWise ATTCGGTGGAAGTACATGATCGTGGACGAAGGCCACCGGATGAAGAATCACCACTGCAAGCTAACCCAGGTCCTGAACACACACTATGTGGCCCCCAGGCGGATCCTTCTGACTGGGACCCCACTGCAGAATAAGCTTCCGGAACTCTGGGCCCTCCTCAACTTCCTCCTCCCTACAATCTTCAAGAGTTGCAGCACATTTGAGCAGTGGTTTAATGCTCCATTTGCCATGACCGGTGAAAGG aatcactcatcatgcattaacacaacatattttgttcttgtttttcttagATTCGCTGGAAGTACATGATTGTCGATGATGGTCACAGAATGAAGAATCACCACTGCAAGCTGACTCAAGTGTTTAACACACATTATGTGGCCCCAAGGCAAATTCTGCTGTCTGGGACTCCACAGCAAAACAAGCTCCCTAAGCTG---GCACTCCTCAATTTCCTTCTACCTACAATTTTCAAGAGTTACAGTGCGTTTGAGCAGTGGTTTAATGCCCCCTTTGCCATGACTGGTGAGAAAgtaagtgccaaccaggaatcatccaggaatcatatcatggactggggact #### Smarca2_ID5742_19 --> 0 - 0 Original Alignment GTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAG tgacataggccaaaatcacaacaaataaatggttccccgatctcctccagGTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGCCACATGCAAGCCAAGGGGATTCTCCTCACGGACGGGTCGGAGAAAGATAAGAAGgtgaggtttgaatgggcaataatttcaaatatgaataaagtctagctcac Alignment from CESAR GTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAG tgacataggccaaaatcacaacaaataaatggttccccgatctcctccagGTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGCCACATGCAAGCCAAGGGGATTCTCCTCACGGACGGGTCGGAGAAAGATAAGAAGgtgaggtttgaatgggcaataatttcaaatatgaataaagtctagctcac Alignment from Spaln_aa2Genome GTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAG tgacataggccaaaatcacaacaaataaatggttccccgatctcctccagGTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGCCACATGCAAGCCAAGGGGATTCTCCTCACGGACGGGTCGGAGAAAGATAAGAAGgtgaggtttgaatgggcaataatttcaaatatgaataaagtctagctcac Alignment from Spaln_nt2Genome GTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAG tgacataggccaaaatcacaacaaataaatggttccccgatctcctccagGTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGCCACATGCAAGCCAAGGGGATTCTCCTCACGGACGGGTCGGAGAAAGATAAGAAGgtgaggtttgaatgggcaataatttcaaatatgaataaagtctagctcac Alignment from Pairagon GTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAG tgacataggccaaaatcacaacaaataaatggttccccgatctcctccagGTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGCCACATGCAAGCCAAGGGGATTCTCCTCACGGACGGGTCGGAGAAAGATAAGAAGgtgaggtttgaatgggcaataatttcaaatatgaataaagtctagctcac Alignment from Exonerate_protein2genome GTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAG tgacataggccaaaatcacaacaaataaatggttccccgatctcctccagGTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGCCACATGCAAGCCAAGGGGATTCTCCTCACGGACGGGTCGGAGAAAGATAAGAAGgtgaggtttgaatgggcaataatttcaaatatgaataaagtctagctcac Alignment from Exonerate_coding2genome GTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAG tgacataggccaaaatcacaacaaataaatggttccccgatctcctccagGTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGCCACATGCAAGCCAAGGGGATTCTCCTCACGGACGGGTCGGAGAAAGATAAGAAGgtgaggtttgaatgggcaataatttcaaatatgaataaagtctagctcac Alignment from GeneWise GTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAG tgacataggccaaaatcacaacaaataaatggttccccgatctcctccagGTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGCCACATGCAAGCCAAGGGGATTCTCCTCACGGACGGGTCGGAGAAAGATAAGAAGgtgaggtttgaatgggcaataatttcaaatatgaataaagtctagctcac #### Smc3_ID11318_6 --> 0 - 2 Original Alignment ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCac aataatcacccagagactggggatctttcatgttcaccctttaataacagATTGATAAAGAGGAAGTTTCACTTCAAAGAGTTATTGGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCacgtaaggattctttctattcttaccaaccatagagtgttacagatgttcca Alignment from CESAR ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCac aataatcacccagagactggggatctttcatgttcaccctttaataacagATTGATAAAGAGGAAGTTTCACTTCAAAGAGTTATTGGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCacgtaaggattctttctattcttaccaaccatagagtgttacagatgttcca Alignment from Spaln_aa2Genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC aataatcacccagagactggggatctttcatgttcaccctttaataacagATTGATAAAGAGGAAGTTTCACTTCAAAGAGTTATTGGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCACgtaaggattctttctattcttaccaaccatagagtgttacagatgttcca Alignment from Spaln_nt2Genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC aataatcacccagagactggggatctttcatgttcaccctttaataacagATTGATAAAGAGGAAGTTTCACTTCAAAGAGTTATTGGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCACgtaaggattctttctattcttaccaaccatagagtgttacagatgttcca Alignment from Pairagon ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC aataatcacccagagactggggatctttcatgttcaccctttaataacagATTGATAAAGAGGAAGTTTCACTTCAAAGAGTTATTGGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCACgtaaggattctttctattcttaccaaccatagagtgttacagatgttcca Alignment from Exonerate_protein2genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC aataatcacccagagactggggatctttcatgttcaccctttaataacagATTGATAAAGAGGAAGTTTCACTTCAAAGAGTTATTGGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCACgtaaggattctttctattcttaccaaccatagagtgttacagatgttcca Alignment from Exonerate_coding2genome TTTCTGCTTTTGTGGAAATCATTTTTGACAATTCGGACAACCGGTTACCAATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCACGAAA ATCACCCAGAGACTGGGGATCTTTCATGTTCACCCTTTA----ATAACAGATTGATAAAGAGGAAGTTTCACTTCAAAGAGTTATTGGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCAC----gtaaggattctttctattcttaccaaccatagagtgttacagatgt Alignment from GeneWise ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC aataatcacccagagactggggatctttcatgttcaccctttaataacagATTGATAAAGAGGAAGTTTCACTTCAAAGAGTTATTGGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCACgtaaggattctttctattcttaccaaccatagagtgttacagatgttcca #### Smc3_ID11320_8 --> 0 - 1 Original Alignment ATCAACCAAATGGCAACGGCACCAGATTCTCAGAGATTAAAGCTGTTGAGAGAAGTAGCTGGTACTAGAGTGTATGATGAACGGAAAGAAGAAAGCATCTCCCTGATGAAAGAAACAg taaaatgtcaatagcactggcttgtacctttctatctcttgtgcttttagATCAATCAGATGACAACAGCTCCAGATTCCCAAAGATTAAAACTGCTAAGGGAAGTAGCTGGTACTAGAGTGTATGATGAAAGGAAAGAAGAAAGTATCTCCCTAATGAAGGATACGggtgagctaagtgtatagattgtgtaattatcctcatagctaggggtatat Alignment from CESAR ATCAACCAAATGGCAACGGCACCAGATTCTCAGAGATTAAAGCTGTTGAGAGAAGTAGCTGGTACTAGAGTGTATGATGAACGGAAAGAAGAAAGCATCTCCCTGATGAAAGAAACAg taaaatgtcaatagcactggcttgtacctttctatctcttgtgcttttagATCAATCAGATGACAACAGCTCCAGATTCCCAAAGATTAAAACTGCTAAGGGAAGTAGCTGGTACTAGAGTGTATGATGAAAGGAAAGAAGAAAGTATCTCCCTAATGAAGGATACGggtgagctaagtgtatagattgtgtaattatcctcatagctaggggtatat Alignment from Spaln_aa2Genome ATCAACCAAATGGCAACGGCACCAGATTCTCAGAGATTAAAGCTGTTGAGAGAAGTAGCTGGTACTAGAGTGTATGATGAACGGAAAGAAGAAAGCATCTCCCTGATGAAAGAAACAG taaaatgtcaatagcactggcttgtacctttctatctcttgtgcttttagATCAATCAGATGACAACAGCTCCAGATTCCCAAAGATTAAAACTGCTAAGGGAAGTAGCTGGTACTAGAGTGTATGATGAAAGGAAAGAAGAAAGTATCTCCCTAATGAAGGATACGGgtgagctaagtgtatagattgtgtaattatcctcatagctaggggtatat Alignment from Spaln_nt2Genome ATCAACCAAATGGCAACGGCACCAGATTCTCAGAGATTAAAGCTGTTGAGAGAAGTAGCTGGTACTAGAGTGTATGATGAACGGAAAGAAGAAAGCATCTCCCTGATGAAAGAAACAG taaaatgtcaatagcactggcttgtacctttctatctcttgtgcttttagATCAATCAGATGACAACAGCTCCAGATTCCCAAAGATTAAAACTGCTAAGGGAAGTAGCTGGTACTAGAGTGTATGATGAAAGGAAAGAAGAAAGTATCTCCCTAATGAAGGATACGGgtgagctaagtgtatagattgtgtaattatcctcatagctaggggtatat Alignment from Pairagon ATCAACCAAATGGCAACGGCACCAGATTCTCAGAGATTAAAGCTGTTGAGAGAAGTAGCTGGTACTAGAGTGTATGATGAACGGAAAGAAGAAAGCATCTCCCTGATGAAAGAAACAG taaaatgtcaatagcactggcttgtacctttctatctcttgtgcttttagATCAATCAGATGACAACAGCTCCAGATTCCCAAAGATTAAAACTGCTAAGGGAAGTAGCTGGTACTAGAGTGTATGATGAAAGGAAAGAAGAAAGTATCTCCCTAATGAAGGATACGGgtgagctaagtgtatagattgtgtaattatcctcatagctaggggtatat Alignment from Exonerate_protein2genome ATCAACCAAATGGCAACGGCACCAGATTCTCAGAGATTAAAGCTGTTGAGAGAAGTAGCTGGTACTAGAGTGTATGATGAACGGAAAGAAGAAAGCATCTCCCTGATGAAAGAAACAG taaaatgtcaatagcactggcttgtacctttctatctcttgtgcttttagATCAATCAGATGACAACAGCTCCAGATTCCCAAAGATTAAAACTGCTAAGGGAAGTAGCTGGTACTAGAGTGTATGATGAAAGGAAAGAAGAAAGTATCTCCCTAATGAAGGATACGGgtgagctaagtgtatagattgtgtaattatcctcatagctaggggtatat Alignment from Exonerate_coding2genome ATCAACCAAATGGCAACGGCACCAGATTCTCAGAGATTAAAGCTGTTGAGAGAAGTAGCTGGTACTAGAGTGTATGATGAACGGAAAGAAGAAAGCATCTCCCTGATGAAAGAAACAG taaaatgtcaatagcactggcttgtacctttctatctcttgtgcttttagATCAATCAGATGACAACAGCTCCAGATTCCCAAAGATTAAAACTGCTAAGGGAAGTAGCTGGTACTAGAGTGTATGATGAAAGGAAAGAAGAAAGTATCTCCCTAATGAAGGATACGGgtgagctaagtgtatagattgtgtaattatcctcatagctaggggtatat Alignment from GeneWise ATCAACCAAATGGCAACGGCACCAGATTCTCAGAGATTAAAGCTGTTGAGAGAAGTAGCTGGTACTAGAGTGTATGATGAACGGAAAGAAGAAAGCATCTCCCTGATGAAAGAAACAG taaaatgtcaatagcactggcttgtacctttctatctcttgtgcttttagATCAATCAGATGACAACAGCTCCAGATTCCCAAAGATTAAAACTGCTAAGGGAAGTAGCTGGTACTAGAGTGTATGATGAAAGGAAAGAAGAAAGTATCTCCCTAATGAAGGATACGGgtgagctaagtgtatagattgtgtaattatcctcatagctaggggtatat #### Smc3_ID11322_10 --> 0 - 0 Original Alignment CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG gtttttatccaatgttcagattagatagccctgtgtgtttgaccttgtagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGAAATCAAGACAACTAAGGGATGCACAGCAGGATACAAGAGATAAAATGGAAgtaaggtgaagcctaaggtaatacctagatgttacttttactgataatct Alignment from CESAR CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG gtttttatccaatgttcagattagatagccctgtgtgtttgaccttgtagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGAAATCAAGACAACTAAGGGATGCACAGCAGGATACAAGAGATAAAATGGAAgtaaggtgaagcctaaggtaatacctagatgttacttttactgataatct Alignment from Spaln_aa2Genome CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG gtttttatccaatgttcagattagatagccctgtgtgtttgaccttgtagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGAAATCAAGACAACTAAGGGATGCACAGCAGGATACAAGAGATAAAATGGAAgtaaggtgaagcctaaggtaatacctagatgttacttttactgataatct Alignment from Spaln_nt2Genome CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG gtttttatccaatgttcagattagatagccctgtgtgtttgaccttgtagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGAAATCAAGACAACTAAGGGATGCACAGCAGGATACAAGAGATAAAATGGAAgtaaggtgaagcctaaggtaatacctagatgttacttttactgataatct Alignment from Pairagon CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG gtttttatccaatgttcagattagatagccctgtgtgtttgaccttgtagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGAAATCAAGACAACTAAGGGATGCACAGCAGGATACAAGAGATAAAATGGAAgtaaggtgaagcctaaggtaatacctagatgttacttttactgataatct Alignment from Exonerate_protein2genome CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG gtttttatccaatgttcagattagatagccctgtgtgtttgaccttgtagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGAAATCAAGACAACTAAGGGATGCACAGCAGGATACAAGAGATAAAATGGAAgtaaggtgaagcctaaggtaatacctagatgttacttttactgataatct Alignment from Exonerate_coding2genome CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG gtttttatccaatgttcagattagatagccctgtgtgtttgaccttgtagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGAAATCAAGACAACTAAGGGATGCACAGCAGGATACAAGAGATAAAATGGAAgtaaggtgaagcctaaggtaatacctagatgttacttttactgataatct Alignment from GeneWise CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG gtttttatccaatgttcagattagatagccctgtgtgtttgaccttgtagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGAAATCAAGACAACTAAGGGATGCACAGCAGGATACAAGAGATAAAATGGAAgtaaggtgaagcctaaggtaatacctagatgttacttttactgataatct #### Smc3_ID11327_15 --> 1 - 0 Original Alignment tTACTTGTGGAGAGAGGAGAATGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGACCTTGAGAAGAAGCAGCAACTTCTTAGAGCGGCAACAGGAAAG gtttagtgagtaaatttcagcaccactgccattttctcttttcttaaaagtTACTTGTGGCAAGAGGAAAATGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGGCCTTGAAAAGAAGCAGCAACTTCTTAGAGCAGCAACTGGAAAGgtaaagaaatctcagttgacatactaatttatttaatgactttgtttaac Alignment from CESAR tTACTTGTGGAGAGAGGAGAATGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGACCTTGAGAAGAAGCAGCAACTTCTTAGAGCGGCAACAGGAAAG gtttagtgagtaaatttcagcaccactgccattttctcttttcttaaaagtTACTTGTGGCAAGAGGAAAATGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGGCCTTGAAAAGAAGCAGCAACTTCTTAGAGCAGCAACTGGAAAGgtaaagaaatctcagttgacatactaatttatttaatgactttgtttaac Alignment from Spaln_aa2Genome TTACTTGTGGAGAGAGGAGAATGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGACCTTGAGAAGAAGCAGCAACTTCTTAGAGCGGCAACAGGAAAG gtttagtgagtaaatttcagcaccactgccattttctcttttcttaaaagTTACTTGTGGCAAGAGGAAAATGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGGCCTTGAAAAGAAGCAGCAACTTCTTAGAGCAGCAACTGGAAAGgtaaagaaatctcagttgacatactaatttatttaatgactttgtttaac Alignment from Spaln_nt2Genome TTACTTGTGGAGAGAGGAGAATGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGACCTTGAGAAGAAGCAGCAACTTCTTAGAGCGGCAACAGGAAAG gtttagtgagtaaatttcagcaccactgccattttctcttttcttaaaagTTACTTGTGGCAAGAGGAAAATGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGGCCTTGAAAAGAAGCAGCAACTTCTTAGAGCAGCAACTGGAAAGgtaaagaaatctcagttgacatactaatttatttaatgactttgtttaac Alignment from Pairagon TTACTTGTGGAGAGAGGAGAATGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGACCTTGAGAAGAAGCAGCAACTTCTTAGAGCGGCAACAGGAAAG gtttagtgagtaaatttcagcaccactgccattttctcttttcttaaaagTTACTTGTGGCAAGAGGAAAATGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGGCCTTGAAAAGAAGCAGCAACTTCTTAGAGCAGCAACTGGAAAGgtaaagaaatctcagttgacatactaatttatttaatgactttgtttaac Alignment from Exonerate_protein2genome TTACTTGTGGAGAGAGGAGAATGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGACCTTGAGAAGAAGCAGCAACTTCTTAGAGCGGCAACAGGAAAG gtttagtgagtaaatttcagcaccactgccattttctcttttcttaaaagTTACTTGTGGCAAGAGGAAAATGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGGCCTTGAAAAGAAGCAGCAACTTCTTAGAGCAGCAACTGGAAAGgtaaagaaatctcagttgacatactaatttatttaatgactttgtttaac Alignment from Exonerate_coding2genome TTACTTGTGGAGAGAGGAGAATGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGACCTTGAGAAGAAGCAGCAACTTCTTAGAGCGGCAACAGGAAAG gtttagtgagtaaatttcagcaccactgccattttctcttttcttaaaagTTACTTGTGGCAAGAGGAAAATGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGGCCTTGAAAAGAAGCAGCAACTTCTTAGAGCAGCAACTGGAAAGgtaaagaaatctcagttgacatactaatttatttaatgactttgtttaac Alignment from GeneWise TTACTTGTGGAGAGAGGAGAATGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGACCTTGAGAAGAAGCAGCAACTTCTTAGAGCGGCAACAGGAAAG gtttagtgagtaaatttcagcaccactgccattttctcttttcttaaaagTTACTTGTGGCAAGAGGAAAATGCAGAACAACAAGCACTTGCTGCTAAAAGAGAAGGCCTTGAAAAGAAGCAGCAACTTCTTAGAGCAGCAACTGGAAAGgtaaagaaatctcagttgacatactaatttatttaatgactttgtttaac #### Smc3_ID11336_24 --> 2 - 0 Original Alignment atTTGGACAATTCCATTGACAAAACAGAAGCTGGAATTAAAGAGCTCCAGAAAAGTATGGAGCGCTGGAAAAATATGGAGAAAGAACACATGGATGCCATAAATCATGATACTAAAGAGCTGGAGAAGATGACCAACCGGCAAGGCATGCTGTTGAAGAAGAAGGAGGAGTGTATGAAGAAGATCCGGGAGCTGGGGTCCCTCCCCCAGGAAGCGTTTGAGAAGTACCAGACACTGAGCCTGAAGCAG tctagaacaatccaatgatgtgttctctctgactgttgttttgtttgcagacTTGGAAAATTCTCTTTACAAGACAAAAGCA---------GAGTTGCAACAAAGT------ACCTGGCAAAATACGGAGAAAGAGCACATGGATGCCATAAATCATGATATGAAAGAGTTAGATAAGATGACAAACCAACAAGGCATGCTTCTTAAA---AAGCAA---------AAA------------------ACCCTCCCCTGGGAAGTATTTGAGGAGGATCAGACACTGCCGCTGAAGGAGgtaagtgtgtttgcaataagtgatcagcccccctatacatcctgtaaatc Alignment from CESAR atTTGGACAATTCCATTGACAAAACAGAAGCTGGAATTAAAGAGCTCCAGAAAAGTATGGAGCGCTGGAAAAATATGGAGAAAGAACACATGGATGCCATAAATCATGATACTAAAGAGCTGGAGAAGATGACCAACCGGCAAGGCATGCTGTTGAAGAAGAAGGAGGAGTGTATGAAGAAGATCCGGGAGCTGGGGTCCCTCCCCCAGGAAGCGTTTGAGAAGTACCAGACACTGAGCCTGAAGCAG tctagaacaatccaatgatgtgttctctctgactgttgttttgtttgcagacTTGGAAAATTCTCTTTACAAGACAAAAGCA---------GAGTTGCAACAAAGTACC------TGGCAAAATACGGAGAAAGAGCACATGGATGCCATAAATCATGATATGAAAGAGTTAGATAAGATGACAAACCAACAAGGCATGCTTCTTAAAAAGCAAAAA------------------------------ACCCTCCCCTGGGAAGTATTTGAGGAGGATCAGACACTGCCGCTGAAGGAGgtaagtgtgtttgcaataagtgatcagcccccctatacatcctgtaaatc Alignment from Spaln_aa2Genome ATTTGGACAATTCCATTGACAAAACAGAAGCTGGAATTAAAGAGCTCCAGAAAAGTATGGAGCGCTGGAAAAATATGGAGAAAGAACACATGGATGCCATAAATCATGATACTAAAGAGCTGGAGAAGATGACCAACCGGCAAGGCATGCTGTTGAAGAAGAAGGAGGAGTGTATGAAGAAGATCCGGGAGCTGGGGTCCCTCCCCCAGGAAGCGTTTGAGAAGTACCAGACACTGAGCCTGAAGCAG tctagaacaatccaatgatgtgttctctctgactgttgttttgtttgcagACTTGGAAAATTCTCTTTACAAGACAAAAGCA---------GAGTTGCAACAAAGTACC------TGGCAAAATACGGAGAAAGAGCACATGGATGCCATAAATCATGATATGAAAGAGTTAGATAAGATGACAAACCAACAAGGCATGCTTCTTAAAAAGCAAAAA------------------------------ACCCTCCCCTGGGAAGTATTTGAGGAGGATCAGACACTGCCGCTGAAGGAGgtaagtgtgtttgcaataagtgatcagcccccctatacatcctgtaaatc Alignment from Spaln_nt2Genome ATTTGGACAATTCCATTGACAAAACAGAAGCTGGAATTAAAGAGCTCCAGAAAAGTATGGAGCGCTGGAAAAATATGGAGAAAGAACACATGGATGCCATAAATCATGATACTAAAGAGCTGGAGAAGATGACCAACCGGCAAGGCATGCTGTTGAAGAAGAAGGAGGAGTGTATGAAGAAGATCCGGGAGCTGGGGTCCCTCCCCCAGGAAGCGTTTGAGAAGTACCAGACACTGAGCCTGAAGCAG tctagaacaatccaatgatgtgttctctctgactgttgttttgtttgcagACTTGGAAAATTCTCTTTACAAGACAAAAGC---------AGAGTTGCAACAAAGTA------CCTGGCAAAATACGGAGAAAGAGCACATGGATGCCATAAATCATGATATGAAAGAGTTAGATAAGATGACAAACCAACAAGGCATGCTTCTTAAAAAGCA-------------AAAAA-----------------CCCTCCCCTGGGAAGTATTTGAGGAGGATCAGACACTGCCGCTGAAGGAGgtaagtgtgtttgcaataagtgatcagcccccctatacatcctgtaaatc Alignment from Pairagon ATTTGGACAATTCCATTGACAAAACAGAAGCTGGAATTAAAGAGCTCCAGAAAAGTATGGAGCGCTGGAAAAATATGGAGAAAGAACACATGGATGCCATAAATCATGATACTAAAGAGCTGGAGAAGATGACCAACCGGCAAGGCATGCTGTTGAAGAAGAAGGAGGAGTGTATGAAGAAGATCCGGGAGCTGGGGT----------------CCCTCCCCCAGGAAGCGTTTGAGAAGTACCAGACACTGAGCCTGAAGCAG tctagaacaatccaatgatgtgttctctctgactgttgttttgtttgcagACTTGGAAAATTCTCTTTACAAGACAAAAGC---------AGAGTTGCAACAAAGTAC------CTGGCAAAATACGGAGAAAGAGCACATGGATGCCATAAATCATGATATGAAAGAGTTAGATAAGATGACAAACCAACAAGGCATGCT----------------------------------------------TCTTAAAAAGCAAAAAACCCTCCCCTGGGAAGTATTTGAGGAGGATCAGACACTGCCGCTGAAGGAGgtaagtgtgtttgcaataagtgatcagcccccctatacatcctgtaaatc Alignment from Exonerate_protein2genome ATTTGGACAATTCCATTGACAAAACAGAAGCTGGAATTAAAGAGCTCCAGAAAAGTATGGAGCGCTGGAAAAATATGGAGAAAGAACACATGGATGCCATAAATCATGATACTAAAGAGCTGGAGAAGATGACCAACCGGCAAGGCATGCTGTTGAAGAAGAAGGAG tctagaacaatccaatgatgtgttctctctgactgttgttttgtttgcagACTTGGAAAATTCTCTTTACAAGACAAAAGCA---------GAGTTGCAACAAAGT------ACCTGGCAAAATACGGAGAAAGAGCACATGGATGCCATAAATCATGATATGAAAGAGTTAGATAAGATGACAAACCAACAAGGCATGCTTCTTAAAAAGCAAAAAaccctcccctgggaagtatttgaggaggatcagacactgccgctgaaggaggtaagtgtgtttgcaataagtgatcagcccccctatacatcctgtaaatc Alignment from Exonerate_coding2genome ATTTGGACAATTCCATTGACAAAACAGAAGCTGGAATTAAAGAGCTCCAGAAAAGTATGGAGCGCTGGAAAAATATGGAGAAAGAACACATGGATGCCATAAATCATGATACTAAAGAGCTGGAGAAGATGACCAACCGGCAAGGCATGCTGTTGAAGAAGAAGGAG tctagaacaatccaatgatgtgttctctctgactgttgttttgtttgcagACTTGGAAAATTCTCTTTACAAGACAAAAGCA---------GAGTTGCAACAAAGT------ACCTGGCAAAATACGGAGAAAGAGCACATGGATGCCATAAATCATGATATGAAAGAGTTAGATAAGATGACAAACCAACAAGGCATGCTTCTTAAAAAGCAAAAAaccctcccctgggaagtatttgaggaggatcagacactgccgctgaaggaggtaagtgtgtttgcaataagtgatcagcccccctatacatcctgtaaatc Alignment from GeneWise ATTTGGACAATTCCATTGACAAAACAGAAGCTGGAATTAAAGAGCTCCAGAAAAGTATGGAGCGCTGGAAAAATATGGAGAAAGAACACATGGATGCCATAAATCATGATACTAAAGAGCTGGAGAAGATGACCAACCGGCAAGGCATGCTGTTGAAGAAGAAGGAGGAGTGTATGAAGAAGATCCGGGAGCTGGGGTCCCTCCCCCAGGAAGCGTTTGAGAAGTACCAGACACTGAGCCTGAAGCAG tctagaacaatccaatgatgtgttctctctgactgttgttttgtttgcagACTTGGAAAATTCTCTTTACAAGACAAAAGCA---------GAGTTGCAACAAAGTACC------TGGCAAAATACGGAGAAAGAGCACATGGATGCCATAAATCATGATATGAAAGAGTTAGATAAGATGACAAACCAACAAGGCATGCTTCTTAAAAAGCAAAAA------------------------------ACCCTCCCCTGGGAAGTATTTGAGGAGGATCAGACACTGCCGCTGAAGGAGgtaagtgtgtttgcaataagtgatcagcccccctatacatcctgtaaatc #### Smc3_ID11340_28 --> 2 - 0 Original Alignment atATGATTATGGAGCTAGCCGTGCATGCCCAGTTTATTACCACTACTTTCAGGCCTGAACTGCTTGAGTCAGCTGACAAATTCTATGGTGTAAAGTTCAGAAATAAG cccgatccttaaagctgggtattctgttgacagatggctttttgttccagatATGATTATGGAGCTAGCGGTGCATGCCCAGTTCATCACGACTACTTTTAGGCCTGAACTGCTTGAGTCAGCTGACAAATTCTATGGTGTCAAGTTCAGAAATAAGgtgaggaaggtggtttgtcattcccatctcaataatcggcaaaattttgt Alignment from CESAR atATGATTATGGAGCTAGCCGTGCATGCCCAGTTTATTACCACTACTTTCAGGCCTGAACTGCTTGAGTCAGCTGACAAATTCTATGGTGTAAAGTTCAGAAATAAG cccgatccttaaagctgggtattctgttgacagatggctttttgttccagatATGATTATGGAGCTAGCGGTGCATGCCCAGTTCATCACGACTACTTTTAGGCCTGAACTGCTTGAGTCAGCTGACAAATTCTATGGTGTCAAGTTCAGAAATAAGgtgaggaaggtggtttgtcattcccatctcaataatcggcaaaattttgt Alignment from Spaln_aa2Genome ATATGATTATGGAGCTAGCCGTGCATGCCCAGTTTATTACCACTACTTTCAGGCCTGAACTGCTTGAGTCAGCTGACAAATTCTATGGTGTAAAGTTCAGAAATAAG cccgatccttaaagctgggtattctgttgacagatggctttttgttccagATATGATTATGGAGCTAGCGGTGCATGCCCAGTTCATCACGACTACTTTTAGGCCTGAACTGCTTGAGTCAGCTGACAAATTCTATGGTGTCAAGTTCAGAAATAAGgtgaggaaggtggtttgtcattcccatctcaataatcggcaaaattttgt Alignment from Spaln_nt2Genome ATATGATTATGGAGCTAGCCGTGCATGCCCAGTTTATTACCACTACTTTCAGGCCTGAACTGCTTGAGTCAGCTGACAAATTCTATGGTGTAAAGTTCAGAAATAAG cccgatccttaaagctgggtattctgttgacagatggctttttgttccagATATGATTATGGAGCTAGCGGTGCATGCCCAGTTCATCACGACTACTTTTAGGCCTGAACTGCTTGAGTCAGCTGACAAATTCTATGGTGTCAAGTTCAGAAATAAGgtgaggaaggtggtttgtcattcccatctcaataatcggcaaaattttgt Alignment from Pairagon ATATGATTATGGAGCTAGCCGTGCATGCCCAGTTTATTACCACTACTTTCAGGCCTGAACTGCTTGAGTCAGCTGACAAATTCTATGGTGTAAAGTTCAGAAATAAG cccgatccttaaagctgggtattctgttgacagatggctttttgttccagATATGATTATGGAGCTAGCGGTGCATGCCCAGTTCATCACGACTACTTTTAGGCCTGAACTGCTTGAGTCAGCTGACAAATTCTATGGTGTCAAGTTCAGAAATAAGgtgaggaaggtggtttgtcattcccatctcaataatcggcaaaattttgt Alignment from Exonerate_protein2genome ATATGATTATGGAGCTAGCCGTGCATGCCCAGTTTATTACCACTACTTTCAGGCCTGAACTGCTTGAGTCAGCTGACAAATTCTATGGTGTAAAGTTCAGAAATAAG cccgatccttaaagctgggtattctgttgacagatggctttttgttccagATATGATTATGGAGCTAGCGGTGCATGCCCAGTTCATCACGACTACTTTTAGGCCTGAACTGCTTGAGTCAGCTGACAAATTCTATGGTGTCAAGTTCAGAAATAAGgtgaggaaggtggtttgtcattcccatctcaataatcggcaaaattttgt Alignment from Exonerate_coding2genome ATATGATTATGGAGCTAGCCGTGCATGCCCAGTTTATTACCACTACTTTCAGGCCTGAACTGCTTGAGTCAGCTGACAAATTCTATGGTGTAAAGTTCAGAAATAAG cccgatccttaaagctgggtattctgttgacagatggctttttgttccagATATGATTATGGAGCTAGCGGTGCATGCCCAGTTCATCACGACTACTTTTAGGCCTGAACTGCTTGAGTCAGCTGACAAATTCTATGGTGTCAAGTTCAGAAATAAGgtgaggaaggtggtttgtcattcccatctcaataatcggcaaaattttgt Alignment from GeneWise ATATGATTATGGAGCTAGCCGTGCATGCCCAGTTTATTACCACTACTTTCAGGCCTGAACTGCTTGAGTCAGCTGACAAATTCTATGGTGTAAAGTTCAGAAATAAG cccgatccttaaagctgggtattctgttgacagatggctttttgttccagATATGATTATGGAGCTAGCGGTGCATGCCCAGTTCATCACGACTACTTTTAGGCCTGAACTGCTTGAGTCAGCTGACAAATTCTATGGTGTCAAGTTCAGAAATAAGgtgaggaaggtggtttgtcattcccatctcaataatcggcaaaattttgt #### Smc5_ID5108_23 --> 0 - 0 Original Alignment GAAGATTATGATAAATATGGAATCCGGATTAGAGTAAAATTTCGCAGTAGTACTCAGCTGCATGAATTAACTCCTCATCATCAAAGTGGAGGTGAAAGAAGTGTTTCTACTATGCTATACTTGATGGCACTTCAGGAGCTTAACAGATGTCCGTTCAGAGTAGTCGATGAAATTAATCAG GGTATG accaaaggtagttaaagccacaaagatgtctatttcctttcttttcttagGAAGATTATGATAAATATGGAATCCGGATTAGAGTGAAATTTCGCGGTAGTACACAGCTGCATGAATTAACTCCTCATCTCCAAAGCGGAGGTGAAAGAAGTGTTTCAACTATGCTGTACTTAATGGCACTCCAGGAACTTAACAGATGTCTGTTCAGGGTAGTTGATGAAATAAATCAAgtgagttacccactaaatgcgatcaaaggtgtatcctcctgcagGGCATG Alignment from CESAR GAAGATTATGATAAATATGGAATCCGGATTAGAGTAAAATTTCGCAGTAGTACTCAGCTGCATGAATTAACTCCTCATCATCAAAGTGGAGGTGAAAGAAGTGTTTCTACTATGCTATACTTGATGGCACTTCAGGAGCTTAACAGATGTCCGTTCAGAGTAGTCGATGAAATTAATCAG GGTATG accaaaggtagttaaagccacaaagatgtctatttcctttcttttcttagGAAGATTATGATAAATATGGAATCCGGATTAGAGTGAAATTTCGCGGTAGTACACAGCTGCATGAATTAACTCCTCATCTCCAAAGCGGAGGTGAAAGAAGTGTTTCAACTATGCTGTACTTAATGGCACTCCAGGAACTTAACAGATGTCTGTTCAGGGTAGTTGATGAAATAAATCAAgtgagttacccactaaatgcgaccctttccttcccctcccccagGGCATG Alignment from Spaln_aa2Genome GAAGATTATGATAAATATGGAATCCGGATTAGAGTAAAATTTCGCAGTAGTACTCAGCTGCATGAATTAACTCCTCATCATCAAAGTGGAGGTGAAAGAAGTGTTTCTACTATGCTATACTTGATGGCACTTCAGGAGCTTAACAGATGTCCGTTCAGAGTAGTCGATGAAATTAATCAG GGTATG accaaaggtagttaaagccacaaagatgtctatttcctttcttttcttagGAAGATTATGATAAATATGGAATCCGGATTAGAGTGAAATTTCGCGGTAGTACACAGCTGCATGAATTAACTCCTCATCTCCAAAGCGGAGGTGAAAGAAGTGTTTCAACTATGCTGTACTTAATGGCACTCCAGGAACTTAACAGATGTCTGTTCAGGGTAGTTGATGAAATAAATCAAgtgagttacccactaaatgcgatcaaaggtgtatcctcctgcagGGCATG Alignment from Spaln_nt2Genome GAAGATTATGATAAATATGGAATCCGGATTAGAGTAAAATTTCGCAGTAGTACTCAGCTGCATGAATTAACTCCTCATCATCAAAGTGGAGGTGAAAGAAGTGTTTCTACTATGCTATACTTGATGGCACTTCAGGAGCTTAACAGATGTCCGTTCAGAGTAGTCGATGAAATTAATCAG GGTATG accaaaggtagttaaagccacaaagatgtctatttcctttcttttcttagGAAGATTATGATAAATATGGAATCCGGATTAGAGTGAAATTTCGCGGTAGTACACAGCTGCATGAATTAACTCCTCATCTCCAAAGCGGAGGTGAAAGAAGTGTTTCAACTATGCTGTACTTAATGGCACTCCAGGAACTTAACAGATGTCTGTTCAGGGTAGTTGATGAAATAAATCAAgtgagttacccactaaatgcgatcaaaggtgtatcctcctgcagGGCATG Alignment from Pairagon GAAGATTATGATAAATATGGAATCCGGATTAGAGTAAAATTTCGCAGTAGTACTCAGCTGCATGAATTAACTCCTCATCATCAAAGTGGAGGTGAAAGAAGTGTTTCTACTATGCTATACTTGATGGCACTTCAGGAGCTTAACAGATGTCCGTTCAGAGTAGTCGATGAAATTAATCAG GGTATG accaaaggtagttaaagccacaaagatgtctatttcctttcttttcttagGAAGATTATGATAAATATGGAATCCGGATTAGAGTGAAATTTCGCGGTAGTACACAGCTGCATGAATTAACTCCTCATCTCCAAAGCGGAGGTGAAAGAAGTGTTTCAACTATGCTGTACTTAATGGCACTCCAGGAACTTAACAGATGTCTGTTCAGGGTAGTTGATGAAATAAATCAAgtgagttacccactaaatgcgatcaaaggtgtatcctcctgcagGGCATG Alignment from Exonerate_protein2genome GAAGATTATGATAAATATGGAATCCGGATTAGAGTAAAATTTCGCAGTAGTACTCAGCTGCATGAATTAACTCCTCATCATCAAAGTGGAGGTGAAAGAAGTGTTTCTACTATGCTATACTTGATGGCACTTCAGGAGCTTAACAGATGTCCGTTCAGAGTAGTCGATGAAATTAATCAG GGTATG accaaaggtagttaaagccacaaagatgtctatttcctttcttttcttagGAAGATTATGATAAATATGGAATCCGGATTAGAGTGAAATTTCGCGGTAGTACACAGCTGCATGAATTAACTCCTCATCTCCAAAGCGGAGGTGAAAGAAGTGTTTCAACTATGCTGTACTTAATGGCACTCCAGGAACTTAACAGATGTCTGTTCAGGGTAGTTGATGAAATAAATCAAgtgagttacccactaaatgcgatcaaaggtgtatcctcctgcagGGCATG Alignment from Exonerate_coding2genome GAAGATTATGATAAATATGGAATCCGGATTAGAGTAAAATTTCGCAGTAGTACTCAGCTGCATGAATTAACTCCTCATCATCAAAGTGGAGGTGAAAGAAGTGTTTCTACTATGCTATACTTGATGGCACTTCAGGAGCTTAACAGATGTCCGTTCAGAGTAGTCGATGAAATTAATCAG GGTATG accaaaggtagttaaagccacaaagatgtctatttcctttcttttcttagGAAGATTATGATAAATATGGAATCCGGATTAGAGTGAAATTTCGCGGTAGTACACAGCTGCATGAATTAACTCCTCATCTCCAAAGCGGAGGTGAAAGAAGTGTTTCAACTATGCTGTACTTAATGGCACTCCAGGAACTTAACAGATGTCTGTTCAGGGTAGTTGATGAAATAAATCAAgtgagttacccactaaatgcgatcaaaggtgtatcctcctgcagGGCATG Alignment from GeneWise GAAGATTATGATAAATATGGAATCCGGATTAGAGTAAAATTTCGCAGTAGTACTCAGCTGCATGAATTAACTCCTCATCATCAAAGTGGAGGTGAAAGAAGTGTTTCTACTATGCTATACTTGATGGCACTTCAGGAGCTTAACAGATGTCCGTTCAGAGTAGTCGATGAAATTAATCAG GGTATG accaaaggtagttaaagccacaaagatgtctatttcctttcttttcttagGAAGATTATGATAAATATGGAATCCGGATTAGAGTGAAATTTCGCGGTAGTACACAGCTGCATGAATTAACTCCTCATCTCCAAAGCGGAGGTGAAAGAAGTGTTTCAACTATGCTGTACTTAATGGCACTCCAGGAACTTAACAGATGTCTGTTCAGGGTAGTTGATGAAATAAATCAAgtgagttacccactaaatgcgatcaaaggtgtatcctcctgcagGGCATG #### Smc5_ID5109_22 --> 0 - 0 Original Alignment GTGAAAGAAAGGTGGCTGAACCCCTTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAG tctgtgcacaatcatctagattctgtactgagccttaactccctactcagGTGAAAGAACGGTGGCTGAACCCCCTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAGgtgagagagctttagggaggtgtatcttgtaacaatatatggtttctaca Alignment from CESAR GTGAAAGAAAGGTGGCTGAACCCCTTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAG tctgtgcacaatcatctagattctgtactgagccttaactccctactcagGTGAAAGAACGGTGGCTGAACCCCCTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAGgtgagagagctttagggaggtgtatcttgtaacaatatatggtttctaca Alignment from Spaln_aa2Genome GTGAAAGAAAGGTGGCTGAACCCCTTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAG tctgtgcacaatcatctagattctgtactgagccttaactccctactcagGTGAAAGAACGGTGGCTGAACCCCCTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAGgtgagagagctttagggaggtgtatcttgtaacaatatatggtttctaca Alignment from Spaln_nt2Genome GTGAAAGAAAGGTGGCTGAACCCCTTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAG tctgtgcacaatcatctagattctgtactgagccttaactccctactcagGTGAAAGAACGGTGGCTGAACCCCCTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAGgtgagagagctttagggaggtgtatcttgtaacaatatatggtttctaca Alignment from Pairagon GTGAAAGAAAGGTGGCTGAACCCCTTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAG tctgtgcacaatcatctagattctgtactgagccttaactccctactcagGTGAAAGAACGGTGGCTGAACCCCCTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAGgtgagagagctttagggaggtgtatcttgtaacaatatatggtttctaca Alignment from Exonerate_protein2genome GTGAAAGAAAGGTGGCTGAACCCCTTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAG tctgtgcacaatcatctagattctgtactgagccttaactccctactcagGTGAAAGAACGGTGGCTGAACCCCCTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAGgtgagagagctttagggaggtgtatcttgtaacaatatatggtttctaca Alignment from Exonerate_coding2genome GTGAAAGAAAGGTGGCTGAACCCCTTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAG tctgtgcacaatcatctagattctgtactgagccttaactccctactcagGTGAAAGAACGGTGGCTGAACCCCCTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAGgtgagagagctttagggaggtgtatcttgtaacaatatatggtttctaca Alignment from GeneWise GTGAAAGAAAGGTGGCTGAACCCCTTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAG tctgtgcacaatcatctagattctgtactgagccttaactccctactcagGTGAAAGAACGGTGGCTGAACCCCCTAAAGGAGCTAGTAGAAAAAATTAATGAGAAATTCAGCAACTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTTCATACAGAAAATGAGgtgagagagctttagggaggtgtatcttgtaacaatatatggtttctaca #### Smc5_ID5114_19 --> 0 - 0 Original Alignment CAAGTACCCACCATTCCAAATGGACACAGCTCCTCACCCCCCATG aagtgtggtgagaaggaagccttaaagtagaactatgtgtttctccacagCAAGTCCCCACCATCCCAAATGCACATAGCTCTTCACCTACAATGgtgagttgtatgcacttccccatgaaaatctcaaccctctattattcatc Alignment from CESAR CAAGTACCCACCATTCCAAATGGACACAGCTCCTCACCCCCCATG aagtgtggtgagaaggaagccttaaagtagaactatgtgtttctccacagCAAGTCCCCACCATCCCAAATGCACATAGCTCTTCACCTACAATGgtgagttgtatgcacttccccatgaaaatctcaaccctctattattcatc Alignment from Spaln_aa2Genome CAAGTACCCACCATTCCAAATGGACACAGCTCCTCACCCCCCATG aagtgtggtgagaaggaagccttaaagtagaactatgtgtttctccacagCAAGTCCCCACCATCCCAAATGCACATAGCTCTTCACCTACAATGgtgagttgtatgcacttccccatgaaaatctcaaccctctattattcatc Alignment from Spaln_nt2Genome CAAGTACCCACCATTCCAAATGGACACAGCTCCTCACCCCCCATG aagtgtggtgagaaggaagccttaaagtagaactatgtgtttctccacagCAAGTCCCCACCATCCCAAATGCACATAGCTCTTCACCTACAATGgtgagttgtatgcacttccccatgaaaatctcaaccctctattattcatc Alignment from Pairagon CAAGTACCCACCATTCCAAATGGACACAGCTCCTCACCCCCCATG aagtgtggtgagaaggaagccttaaagtagaactatgtgtttctccacagCAAGTCCCCACCATCCCAAATGCACATAGCTCTTCACCTACAATGgtgagttgtatgcacttccccatgaaaatctcaaccctctattattcatc Alignment from Exonerate_protein2genome CAAGTACCCACCATTCCAAATGGACACAGCTCCTCACCCCCCATG aagtgtggtgagaaggaagccttaaagtagaactatgtgtttctccacagCAAGTCCCCACCATCCCAAATGCACATAGCTCTTCACCTACAATGgtgagttgtatgcacttccccatgaaaatctcaaccctctattattcatc Alignment from Exonerate_coding2genome CAAGTACCCACCATTCCAAATGGACACAGCTCCTCACCCCCCATG aagtgtggtgagaaggaagccttaaagtagaactatgtgtttctccacagCAAGTCCCCACCATCCCAAATGCACATAGCTCTTCACCTACAATGgtgagttgtatgcacttccccatgaaaatctcaaccctctattattcatc Alignment from GeneWise CAAGTACCCACCATTCCAAATGGACACAGCTCCTCACCCCCCATG aagtgtggtgagaaggaagccttaaagtagaactatgtgtttctccacagCAAGTCCCCACCATCCCAAATGCACATAGCTCTTCACCTACAATGgtgagttgtatgcacttccccatgaaaatctcaaccctctattattcatc #### Smc5_ID5120_13 --> 1 - 0 Original Alignment aCAATATGGATTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGAGGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGG gttgagtagcacttgtagtgtttcataatgatctctttgttgatctgtagaCCGTATGGGTTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCACGATGTCCCTGTGGGAACTGAACGGACCCGAGAAAGAATTGAACGGgtgaggagtgcaactgcacacagctggaaacttggtatgcttcagcaact Alignment from CESAR aCAATATGGATTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGAGGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGG gttgagtagcacttgtagtgtttcataatgatctctttgttgatctgtagaCCGTATGGGTTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCACGATGTCCCTGTGGGAACTGAACGGACCCGAGAAAGAATTGAACGGgtgaggagtgcaactgcacacagctggaaacttggtatgcttcagcaact Alignment from Spaln_aa2Genome ACAATATGGATTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGAGGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGG gttgagtagcacttgtagtgtttcataatgatctctttgttgatctgtagACCGTATGGGTTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCACGATGTCCCTGTGGGAACTGAACGGACCCGAGAAAGAATTGAACGGgtgaggagtgcaactgcacacagctggaaacttggtatgcttcagcaact Alignment from Spaln_nt2Genome ACAATATGGATTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGAGGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGG gttgagtagcacttgtagtgtttcataatgatctctttgttgatctgtagACCGTATGGGTTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCACGATGTCCCTGTGGGAACTGAACGGACCCGAGAAAGAATTGAACGGgtgaggagtgcaactgcacacagctggaaacttggtatgcttcagcaact Alignment from Pairagon ACAATATGGATTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGAGGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGG gttgagtagcacttgtagtgtttcataatgatctctttgttgatctgtagACCGTATGGGTTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCACGATGTCCCTGTGGGAACTGAACGGACCCGAGAAAGAATTGAACGGgtgaggagtgcaactgcacacagctggaaacttggtatgcttcagcaact Alignment from Exonerate_protein2genome ACAATATGGATTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGAGGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGG gttgagtagcacttgtagtgtttcataatgatctctttgttgatctgtagACCGTATGGGTTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCACGATGTCCCTGTGGGAACTGAACGGACCCGAGAAAGAATTGAACGGgtgaggagtgcaactgcacacagctggaaacttggtatgcttcagcaact Alignment from Exonerate_coding2genome ACAATATGGATTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGAGGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGG gttgagtagcacttgtagtgtttcataatgatctctttgttgatctgtagACCGTATGGGTTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCACGATGTCCCTGTGGGAACTGAACGGACCCGAGAAAGAATTGAACGGgtgaggagtgcaactgcacacagctggaaacttggtatgcttcagcaact Alignment from GeneWise ACAATATGGATTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGAGGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGG gttgagtagcacttgtagtgtttcataatgatctctttgttgatctgtagACCGTATGGGTTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCACGATGTCCCTGTGGGAACTGAACGGACCCGAGAAAGAATTGAACGGgtgaggagtgcaactgcacacagctggaaacttggtatgcttcagcaact #### Smc5_ID5121_12 --> 0 - 2 Original Alignment GTTCGTGACAACAAGAAGTTAAGAGTAAATGCTGTTATTGCCCCCAAGATCTCATATGCAGACAAAGCCCCTTCAAGATCTCTGAATGACTTAaa atatcacagtcctttgactcaatgtggatgaccactcactgtctttctagGTTCGAGAGAATGAAAAACTAAGAGTTAATGCTGTGATTGCACCCAAGATATCATACGCTGATAAAGCCCCAGCAAGCTCTCTAAATGACTTAaagtttgttctaatctaagaactaagtattgtttagtgactgtaacctgcac Alignment from CESAR GTTCGTGACAACAAGAAGTTAAGAGTAAATGCTGTTATTGCCCCCAAGATCTCATATGCAGACAAAGCCCCTTCAAGATCTCTGAATGACTTAaa atatcacagtcctttgactcaatgtggatgaccactcactgtctttctagGTTCGAGAGAATGAAAAACTAAGAGTTAATGCTGTGATTGCACCCAAGATATCATACGCTGATAAAGCCCCAGCAAGCTCTCTAAATGACTTAaagtttgttctaatctaagaactaagtattgtttagtgactgtaacctgcac Alignment from Spaln_aa2Genome GTTCGTGACAACAAGAAGTTAAGAGTAAATGCTGTTATTGCCCCCAAGATCTCATATGCAGACAAAGCCCCTTCAAGATCTCTGAATGACTTAAA atatcacagtcctttgactcaatgtggatgaccactcactgtctttctagGTTCGAGAGAATGAAAAACTAAGAGTTAATGCTGTGATTGCACCCAAGATATCATACGCTGATAAAGCCCCAGCAAGCTCTCTAAATGACTTAAAgtttgttctaatctaagaactaagtattgtttagtgactgtaacctgcac Alignment from Spaln_nt2Genome GTTCGTGACAACAAGAAGTTAAGAGTAAATGCTGTTATTGCCCCCAAGATCTCATATGCAGACAAAGCCCCTTCAAGATCTCTGAATGACTTAAA atatcacagtcctttgactcaatgtggatgaccactcactgtctttctagGTTCGAGAGAATGAAAAACTAAGAGTTAATGCTGTGATTGCACCCAAGATATCATACGCTGATAAAGCCCCAGCAAGCTCTCTAAATGACTTAAAgtttgttctaatctaagaactaagtattgtttagtgactgtaacctgcac Alignment from Pairagon GTTCGTGACAACAAGAAGTTAAGAGTAAATGCTGTTATTGCCCCCAAGATCTCATATGCAGACAAAGCCCCTTCAAGATCTCTGAATGACTTAAA atatcacagtcctttgactcaatgtggatgaccactcactgtctttctagGTTCGAGAGAATGAAAAACTAAGAGTTAATGCTGTGATTGCACCCAAGATATCATACGCTGATAAAGCCCCAGCAAGCTCTCTAAATGACTTAAAgtttgttctaatctaagaactaagtattgtttagtgactgtaacctgcac Alignment from Exonerate_protein2genome GTTCGTGACAACAAGAAGTTAAGAGTAAATGCTGTTATTGCCCCCAAGATCTCATATGCAGACAAAGCCCCTTCAAGATCTCTGAATGACTTAAA atatcacagtcctttgactcaatgtggatgaccactcactgtctttctagGTTCGAGAGAATGAAAAACTAAGAGTTAATGCTGTGATTGCACCCAAGATATCATACGCTGATAAAGCCCCAGCAAGCTCTCTAAATGACTTAAAgtttgttctaatctaagaactaagtattgtttagtgactgtaacctgcac Alignment from Exonerate_coding2genome GTTCGTGACAACAAGAAGTTAAGAGTAAATGCTGTTATTGCCCCCAAGATCTCATATGCAGACAAAGCCCCTTCAAGATCTCTGAATGACTTAAA atatcacagtcctttgactcaatgtggatgaccactcactgtctttctagGTTCGAGAGAATGAAAAACTAAGAGTTAATGCTGTGATTGCACCCAAGATATCATACGCTGATAAAGCCCCAGCAAGCTCTCTAAATGACTTAAAgtttgttctaatctaagaactaagtattgtttagtgactgtaacctgcac Alignment from GeneWise GTTCGTGACAACAAGAAGTTAAGAGTAAATGCTGTTATTGCCCCCAAGATCTCATATGCAGACAAAGCCCCTTCAAGATCTCTGAATGACTTAAA atatcacagtcctttgactcaatgtggatgaccactcactgtctttctagGTTCGAGAGAATGAAAAACTAAGAGTTAATGCTGTGATTGCACCCAAGATATCATACGCTGATAAAGCCCCAGCAAGCTCTCTAAATGACTTAAAgtttgttctaatctaagaactaagtattgtttagtgactgtaacctgcac #### Smc5_ID5123_10 --> 2 - 0 Original Alignment gtGTGAGTGATCATATTACACGGTTTGACAATCTTATGAATCAGAAGGAAGATAAGCTGAGACAGCGGTACCGGGATACGTATGATGCAGTCTTGTGGCTGAGAAATAACAGAGACAGGTTTAAACAAAGAGTCTGTGAACCCATAATGCTCACG catattgcaattgtctaggaaaaagtgagtagctttcttgttggttaaaggtGTGAGTGATCATATTACACGATTTGACAATTTAAAGAATCAGAAAGAAGATAAACTAAGACAGCGGTACCGGGATACATATGATGCAGTTCTGTGGCTGAGAAATAACAGAGACAGGTTCAAACAAAGGGTCTGTGAACCCATAATGCTCACAgcaagcaacaatgctcataggatatgtactcaaacatatttctgccctat Alignment from CESAR gtGTGAGTGATCATATTACACGGTTTGACAATCTTATGAATCAGAAGGAAGATAAGCTGAGACAGCGGTACCGGGATACGTATGATGCAGTCTTGTGGCTGAGAAATAACAGAGACAGGTTTAAACAAAGAGTCTGTGAACCCATAATGCTCACG catattgcaattgtctaggaaaaagtgagtagctttcttgttggttaaaggtGTGAGTGATCATATTACACGATTTGACAATTTAAAGAATCAGAAAGAAGATAAACTAAGACAGCGGTACCGGGATACATATGATGCAGTTCTGTGGCTGAGAAATAACAGAGACAGGTTCAAACAAAGGGTCTGTGAACCCATAATGCTCACAgcaagcaacaatgctcataggatatgtactcaaacatatttctgccctat Alignment from Spaln_aa2Genome GTGTGAGTGATCATATTACACGGTTTGACAATCTTATGAATCAGAAGGAAGATAAGCTGAGACAGCGGTACCGGGATACGTATGATGCAGTCTTGTGGCTGAGAAATAACAGAGACAGGTTTAAACAAAGAGTCTGTGAACCCATAATGCTCACG catattgcaattgtctaggaaaaagtgagtagctttcttgttggttaaagGTGTGAGTGATCATATTACACGATTTGACAATTTAAAGAATCAGAAAGAAGATAAACTAAGACAGCGGTACCGGGATACATATGATGCAGTTCTGTGGCTGAGAAATAACAGAGACAGGTTCAAACAAAGGGTCTGTGAACCCATAATGCTCACAgcaagcaacaatgctcataggatatgtactcaaacatatttctgccctat Alignment from Spaln_nt2Genome GTGTGAGTGATCATATTACACGGTTTGACAATCTTATGAATCAGAAGGAAGATAAGCTGAGACAGCGGTACCGGGATACGTATGATGCAGTCTTGTGGCTGAGAAATAACAGAGACAGGTTTAAACAAAGAGTCTGTGAACCCATAATGCTCACG catattgcaattgtctaggaaaaagtgagtagctttcttgttggttaaagGTGTGAGTGATCATATTACACGATTTGACAATTTAAAGAATCAGAAAGAAGATAAACTAAGACAGCGGTACCGGGATACATATGATGCAGTTCTGTGGCTGAGAAATAACAGAGACAGGTTCAAACAAAGGGTCTGTGAACCCATAATGCTCACAgcaagcaacaatgctcataggatatgtactcaaacatatttctgccctat Alignment from Pairagon GTGTGAGTGATCATATTACACGGTTTGACAATCTTATGAATCAGAAGGAAGATAAGCTGAGACAGCGGTACCGGGATACGTATGATGCAGTCTTGTGGCTGAGAAATAACAGAGACAGGTTTAAACAAAGAGTCTGTGAACCCATAATGCTCACG catattgcaattgtctaggaaaaagtgagtagctttcttgttggttaaagGTGTGAGTGATCATATTACACGATTTGACAATTTAAAGAATCAGAAAGAAGATAAACTAAGACAGCGGTACCGGGATACATATGATGCAGTTCTGTGGCTGAGAAATAACAGAGACAGGTTCAAACAAAGGGTCTGTGAACCCATAATGCTCACAgcaagcaacaatgctcataggatatgtactcaaacatatttctgccctat Alignment from Exonerate_protein2genome GTGTGAGTGATCATATTACACGGTTTGACAATCTTATGAATCAGAAGGAAGATAAGCTGAGACAGCGGTACCGGGATACGTATGATGCAGTCTTGTGGCTGAGAAATAACAGAGACAGGTTTAAACAAAGAGTCTGTGAACCCATAATGCTCACG catattgcaattgtctaggaaaaagtgagtagctttcttgttggttaaagGTGTGAGTGATCATATTACACGATTTGACAATTTAAAGAATCAGAAAGAAGATAAACTAAGACAGCGGTACCGGGATACATATGATGCAGTTCTGTGGCTGAGAAATAACAGAGACAGGTTCAAACAAAGGGTCTGTGAACCCATAATGCTCACAgcaagcaacaatgctcataggatatgtactcaaacatatttctgccctat Alignment from Exonerate_coding2genome GTGTGAGTGATCATATTACACGGTTTGACAATCTTATGAATCAGAAGGAAGATAAGCTGAGACAGCGGTACCGGGATACGTATGATGCAGTCTTGTGGCTGAGAAATAACAGAGACAGGTTTAAACAAAGAGTCTGTGAACCCATAATGCTCACG catattgcaattgtctaggaaaaagtgagtagctttcttgttggttaaagGTGTGAGTGATCATATTACACGATTTGACAATTTAAAGAATCAGAAAGAAGATAAACTAAGACAGCGGTACCGGGATACATATGATGCAGTTCTGTGGCTGAGAAATAACAGAGACAGGTTCAAACAAAGGGTCTGTGAACCCATAATGCTCACAgcaagcaacaatgctcataggatatgtactcaaacatatttctgccctat Alignment from GeneWise GTGTGAGTGATCATATTACACGGTTTGACAATCTTATGAATCAGAAGGAAGATAAGCTGAGACAGCGGTACCGGGATACGTATGATGCAGTCTTGTGGCTGAGAAATAACAGAGACAGGTTTAAACAAAGAGTCTGTGAACCCATAATGCTCACGATTAATATGAAA------------G catattgcaattgtctaggaaaaagtgagtagctttcttgttggttaaagGTGTGAGTGATCATATTACACGATTTGACAATTTAAAGAATCAGAAAGAAGATAAACTAAGACAGCGGTACCGGGATACATATGATGCAGTTCTGTGGCTGAGAAATAACAGAGACAGGTTCAAACAAAGGGTCTGTGAACCCATAATGCTCACAGCAAGCAACAATGCTCATAGGATATgtactcaaacatatttctgccctat #### Smc5_ID5126_7 --> 0 - 0 Original Alignment GAATATGAGAATGTACGTCAGGAATATGAAGGTGTGAAACTAATTCGTGACCGAGTGAAGGAAGAGGTCAGGAAACTTAAAGAAGGGCAGATTCCTATGACACGGCGGATTGAGGAGATTGACCGGCAGCGTCACACTTTGGAAGTTCGAATCAAAGAAAAG ttccacttcttgaacacatctgggcttcccaaacactaatatctttaaagGAATATGACAATGTACGTCAGGAGTACGCAGGGGCAAAACTCATTCGGGACCGAGTGAAGGAAGAGGTCAGGAAACTTAAAGAAGGGCAAATTCCTACAACACGACGCATTGAGGAGATTGACCAGCAGCGTCACACATGGGAGGTACAAATCAAGGAAAAGgtaagttcacttcaccctatctgaggaaaggacccatgaacagtgatgtg Alignment from CESAR GAATATGAGAATGTACGTCAGGAATATGAAGGTGTGAAACTAATTCGTGACCGAGTGAAGGAAGAGGTCAGGAAACTTAAAGAAGGGCAGATTCCTATGACACGGCGGATTGAGGAGATTGACCGGCAGCGTCACACTTTGGAAGTTCGAATCAAAGAAAAG ttccacttcttgaacacatctgggcttcccaaacactaatatctttaaagGAATATGACAATGTACGTCAGGAGTACGCAGGGGCAAAACTCATTCGGGACCGAGTGAAGGAAGAGGTCAGGAAACTTAAAGAAGGGCAAATTCCTACAACACGACGCATTGAGGAGATTGACCAGCAGCGTCACACATGGGAGGTACAAATCAAGGAAAAGgtaagttcacttcaccctatctgaggaaaggacccatgaacagtgatgtg Alignment from Spaln_aa2Genome GAATATGAGAATGTACGTCAGGAATATGAAGGTGTGAAACTAATTCGTGACCGAGTGAAGGAAGAGGTCAGGAAACTTAAAGAAGGGCAGATTCCTATGACACGGCGGATTGAGGAGATTGACCGGCAGCGTCACACTTTGGAAGTTCGAATCAAAGAAAAG ttccacttcttgaacacatctgggcttcccaaacactaatatctttaaagGAATATGACAATGTACGTCAGGAGTACGCAGGGGCAAAACTCATTCGGGACCGAGTGAAGGAAGAGGTCAGGAAACTTAAAGAAGGGCAAATTCCTACAACACGACGCATTGAGGAGATTGACCAGCAGCGTCACACATGGGAGGTACAAATCAAGGAAAAGgtaagttcacttcaccctatctgaggaaaggacccatgaacagtgatgtg Alignment from Spaln_nt2Genome GAATATGAGAATGTACGTCAGGAATATGAAGGTGTGAAACTAATTCGTGACCGAGTGAAGGAAGAGGTCAGGAAACTTAAAGAAGGGCAGATTCCTATGACACGGCGGATTGAGGAGATTGACCGGCAGCGTCACACTTTGGAAGTTCGAATCAAAGAAAAG ttccacttcttgaacacatctgggcttcccaaacactaatatctttaaagGAATATGACAATGTACGTCAGGAGTACGCAGGGGCAAAACTCATTCGGGACCGAGTGAAGGAAGAGGTCAGGAAACTTAAAGAAGGGCAAATTCCTACAACACGACGCATTGAGGAGATTGACCAGCAGCGTCACACATGGGAGGTACAAATCAAGGAAAAGgtaagttcacttcaccctatctgaggaaaggacccatgaacagtgatgtg Alignment from Pairagon GAATATGAGAATGTACGTCAGGAATATGAAGGTGTGAAACTAATTCGTGACCGAGTGAAGGAAGAGGTCAGGAAACTTAAAGAAGGGCAGATTCCTATGACACGGCGGATTGAGGAGATTGACCGGCAGCGTCACACTTTGGAAGTTCGAATCAAAGAAAAG ttccacttcttgaacacatctgggcttcccaaacactaatatctttaaagGAATATGACAATGTACGTCAGGAGTACGCAGGGGCAAAACTCATTCGGGACCGAGTGAAGGAAGAGGTCAGGAAACTTAAAGAAGGGCAAATTCCTACAACACGACGCATTGAGGAGATTGACCAGCAGCGTCACACATGGGAGGTACAAATCAAGGAAAAGgtaagttcacttcaccctatctgaggaaaggacccatgaacagtgatgtg Alignment from Exonerate_protein2genome GAATATGAGAATGTACGTCAGGAATATGAAGGTGTGAAACTAATTCGTGACCGAGTGAAGGAAGAGGTCAGGAAACTTAAAGAAGGGCAGATTCCTATGACACGGCGGATTGAGGAGATTGACCGGCAGCGTCACACTTTGGAAGTTCGAATCAAAGAAAAG ttccacttcttgaacacatctgggcttcccaaacactaatatctttaaagGAATATGACAATGTACGTCAGGAGTACGCAGGGGCAAAACTCATTCGGGACCGAGTGAAGGAAGAGGTCAGGAAACTTAAAGAAGGGCAAATTCCTACAACACGACGCATTGAGGAGATTGACCAGCAGCGTCACACATGGGAGGTACAAATCAAGGAAAAGgtaagttcacttcaccctatctgaggaaaggacccatgaacagtgatgtg Alignment from Exonerate_coding2genome GAATATGAGAATGTACGTCAGGAATATGAAGGTGTGAAACTAATTCGTGACCGAGTGAAGGAAGAGGTCAGGAAACTTAAAGAAGGGCAGATTCCTATGACACGGCGGATTGAGGAGATTGACCGGCAGCGTCACACTTTGGAAGTTCGAATCAAAGAAAAG ttccacttcttgaacacatctgggcttcccaaacactaatatctttaaagGAATATGACAATGTACGTCAGGAGTACGCAGGGGCAAAACTCATTCGGGACCGAGTGAAGGAAGAGGTCAGGAAACTTAAAGAAGGGCAAATTCCTACAACACGACGCATTGAGGAGATTGACCAGCAGCGTCACACATGGGAGGTACAAATCAAGGAAAAGgtaagttcacttcaccctatctgaggaaaggacccatgaacagtgatgtg Alignment from GeneWise GAATATGAGAATGTACGTCAGGAATATGAAGGTGTGAAACTAATTCGTGACCGAGTGAAGGAAGAGGTCAGGAAACTTAAAGAAGGGCAGATTCCTATGACACGGCGGATTGAGGAGATTGACCGGCAGCGTCACACTTTGGAAGTTCGAATCAAAGAAAAG ttccacttcttgaacacatctgggcttcccaaacactaatatctttaaagGAATATGACAATGTACGTCAGGAGTACGCAGGGGCAAAACTCATTCGGGACCGAGTGAAGGAAGAGGTCAGGAAACTTAAAGAAGGGCAAATTCCTACAACACGACGCATTGAGGAGATTGACCAGCAGCGTCACACATGGGAGGTACAAATCAAGGAAAAGgtaagttcacttcaccctatctgaggaaaggacccatgaacagtgatgtg #### Smc5_ID5127_6 --> 0 - 0 Original Alignment ACCTCTTGCAAAGAGAAAACTGAATACCTAGAGAAAATGGTTCAGAGAAATGAAAGGTACAAACAAGATGTGGAAAGATTCTATGAACGAAAACGACATTTAGATTTAATTGAGATGCTTGAGGCCAAAAGACCATGGGTG gccatgtaccttttctacttaaggtaattctgtgtgctgctgtcttccagACCTCTTGCAAGGAGAAA---GAATATCTAGAAAAAATGGTTCACAAGAATGAAAGGTACAAACAGGACGTTGAGCGGTTTTATGAGCGGAAGCGACACTTAGATTTAATTGAAATGCTTGAGGCAAAAAGGCCATGGGTAgtaagtttgatttagtagttttttgtcagcgttcaggacataatggcttt Alignment from CESAR ACCTCTTGCAAAGAGAAAACTGAATACCTAGAGAAAATGGTTCAGAGAAATGAAAGGTACAAACAAGATGTGGAAAGATTCTATGAACGAAAACGACATTTAGATTTAATTGAGATGCTTGAGGCCAAAAGACCATGGGTG gccatgtaccttttctacttaaggtaattctgtgtgctgctgtcttccagACCTCTTGCAAGGAGAAA---GAATATCTAGAAAAAATGGTTCACAAGAATGAAAGGTACAAACAGGACGTTGAGCGGTTTTATGAGCGGAAGCGACACTTAGATTTAATTGAAATGCTTGAGGCAAAAAGGCCATGGGTAgtaagtttgatttagtagttttttgtcagcgttcaggacataatggcttt Alignment from Spaln_aa2Genome ACCTCTTGCAAAGAGAAAACTGAATACCTAGAGAAAATGGTTCAGAGAAATGAAAGGTACAAACAAGATGTGGAAAGATTCTATGAACGAAAACGACATTTAGATTTAATTGAGATGCTTGAGGCCAAAAGACCATGGGTG gccatgtaccttttctacttaaggtaattctgtgtgctgctgtcttccagACCTCTTGCAAGGAGAAA---GAATATCTAGAAAAAATGGTTCACAAGAATGAAAGGTACAAACAGGACGTTGAGCGGTTTTATGAGCGGAAGCGACACTTAGATTTAATTGAAATGCTTGAGGCAAAAAGGCCATGGGTAgtaagtttgatttagtagttttttgtcagcgttcaggacataatggcttt Alignment from Spaln_nt2Genome ACCTCTTGCAAAGAGAAAACTGAATACCTAGAGAAAATGGTTCAGAGAAATGAAAGGTACAAACAAGATGTGGAAAGATTCTATGAACGAAAACGACATTTAGATTTAATTGAGATGCTTGAGGCCAAAAGACCATGGGTG gccatgtaccttttctacttaaggtaattctgtgtgctgctgtcttccagACCTCTTGCAAGGAGAAA---GAATATCTAGAAAAAATGGTTCACAAGAATGAAAGGTACAAACAGGACGTTGAGCGGTTTTATGAGCGGAAGCGACACTTAGATTTAATTGAAATGCTTGAGGCAAAAAGGCCATGGGTAgtaagtttgatttagtagttttttgtcagcgttcaggacataatggcttt Alignment from Pairagon ACCTCTTGCAAAGAGAAAACTGAATACCTAGAGAAAATGGTTCAGAGAAATGAAAGGTACAAACAAGATGTGGAAAGATTCTATGAACGAAAACGACATTTAGATTTAATTGAGATGCTTGAGGCCAAAAGACCATGGGTG gccatgtaccttttctacttaaggtaattctgtgtgctgctgtcttccagACCTCTTGCAAGGAGAAA---GAATATCTAGAAAAAATGGTTCACAAGAATGAAAGGTACAAACAGGACGTTGAGCGGTTTTATGAGCGGAAGCGACACTTAGATTTAATTGAAATGCTTGAGGCAAAAAGGCCATGGGTAgtaagtttgatttagtagttttttgtcagcgttcaggacataatggcttt Alignment from Exonerate_protein2genome AAGCAGCTAGAGACCTCTTGCAAAGAGAAAACTGAATACCTAGAGAAAATGGTTCAGAGAAATGAAAGGTACAAACAAGATGTGGAAAGATTCTATGAACGAAAACGACATTTAGATTTAATTGAGATGCTTGAGGCCAAAAGACCATGGGTG gccatgtaccttttctacttaaggtaattctgtgtgctGCTGTCTTCCAGACCTCTTGCAAGGAGAAA---GAATATCTAGAAAAAATGGTTCACAAGAATGAAAGGTACAAACAGGACGTTGAGCGGTTTTATGAGCGGAAGCGACACTTAGATTTAATTGAAATGCTTGAGGCAAAAAGGCCATGGGTAgtaagtttgatttagtagttttttgtcagcgttcaggacataatggcttt Alignment from Exonerate_coding2genome AAGCAGCTAGAGACCTCTTGCAAAGAGAAAACTGAATACCTAGAGAAAATGGTTCAGAGAAATGAAAGGTACAAACAAGATGTGGAAAGATTCTATGAACGAAAACGACATTTAGATTTAATTGAGATGCTTGAGGCCAAAAGACCATGGGTG gccatgtaccttttctacttaaggtaattctgtgtgctGCTGTCTTCCAGACCTCTTGCAAGGAGAAA---GAATATCTAGAAAAAATGGTTCACAAGAATGAAAGGTACAAACAGGACGTTGAGCGGTTTTATGAGCGGAAGCGACACTTAGATTTAATTGAAATGCTTGAGGCAAAAAGGCCATGGGTAgtaagtttgatttagtagttttttgtcagcgttcaggacataatggcttt Alignment from GeneWise ACCTCTTGCAAAGAGAAAACTGAATACCTAGAGAAAATGGTTCAGAGAAATGAAAGGTACAAACAAGATGTGGAAAGATTCTATGAACGAAAACGACATTTAGATTTAATTGAGATGCTTGAGGCCAAAAGACCATGGGTG gccatgtaccttttctacttaaggtaattctgtgtgctgctgtcttccagACCTCTTGCAAGGAGAAA---GAATATCTAGAAAAAATGGTTCACAAGAATGAAAGGTACAAACAGGACGTTGAGCGGTTTTATGAGCGGAAGCGACACTTAGATTTAATTGAAATGCTTGAGGCAAAAAGGCCATGGGTAgtaagtttgatttagtagttttttgtcagcgttcaggacataatggcttt #### Smndc1_ID11278_4 --> 1 - 0 Original Alignment aAAAGAAATGATCGCCCAGCAGCGTGAATATAAAAAGAAAAAAGCTTTGAAAAAAGCACAGAGAATAAAAGAGTTGGAGCAGGAGCGAGAGGACCAGAAGGTGAAATGGCAGCAGTTCAACAACAGGGCGTACTCCAAGAACAAGAAAGGCCAG ggctgtgagccctattcatttatgcgaggacatgtctcctctctgtgcaggAAAGCAATGATTGCCCAACAACGTGAGTATAAAAAAAAAAAGGCTCTGAAGAAGTCACAGAGGATAAAAGATGTGGAACAGGAGAGAGAAGATCAGAAGGTAAAATGGCAACGGTTCAACAATAGGGCATACTCTAAGAACAAAAAGGGAGAGgtgagtcaccctgtcctcacatggtatcactcacctgcaatttgtagcca Alignment from CESAR aAAAGAAATGATCGCCCAGCAGCGTGAATATAAAAAGAAAAAAGCTTTGAAAAAAGCACAGAGAATAAAAGAGTTGGAGCAGGAGCGAGAGGACCAGAAGGTGAAATGGCAGCAGTTCAACAACAGGGCGTACTCCAAGAACAAGAAAGGCCAG ggctgtgagccctattcatttatgcgaggacatgtctcctctctgtgcaggAAAGCAATGATTGCCCAACAACGTGAGTATAAAAAAAAAAAGGCTCTGAAGAAGTCACAGAGGATAAAAGATGTGGAACAGGAGAGAGAAGATCAGAAGGTAAAATGGCAACGGTTCAACAATAGGGCATACTCTAAGAACAAAAAGGGAGAGgtgagtcaccctgtcctcacatggtatcactcacctgcaatttgtagcca Alignment from Spaln_aa2Genome AAAAGAAATGATCGCCCAGCAGCGTGAATATAAAAAGAAAAAAGCTTTGAAAAAAGCACAGAGAATAAAAGAGTTGGAGCAGGAGCGAGAGGACCAGAAGGTGAAATGGCAGCAGTTCAACAACAGGGCGTACTCCAAGAACAAGAAAGGCCAG ggctgtgagccctattcatttatgcgaggacatgtctcctctctgtgcagGAAAGCAATGATTGCCCAACAACGTGAGTATAAAAAAAAAAAGGCTCTGAAGAAGTCACAGAGGATAAAAGATGTGGAACAGGAGAGAGAAGATCAGAAGGTAAAATGGCAACGGTTCAACAATAGGGCATACTCTAAGAACAAAAAGGGAGAGgtgagtcaccctgtcctcacatggtatcactcacctgcaatttgtagcca Alignment from Spaln_nt2Genome AAAAGAAATGATCGCCCAGCAGCGTGAATATAAAAAGAAAAAAGCTTTGAAAAAAGCACAGAGAATAAAAGAGTTGGAGCAGGAGCGAGAGGACCAGAAGGTGAAATGGCAGCAGTTCAACAACAGGGCGTACTCCAAGAACAAGAAAGGCCAG ggctgtgagccctattcatttatgcgaggacatgtctcctctctgtgcagGAAAGCAATGATTGCCCAACAACGTGAGTATAAAAAAAAAAAGGCTCTGAAGAAGTCACAGAGGATAAAAGATGTGGAACAGGAGAGAGAAGATCAGAAGGTAAAATGGCAACGGTTCAACAATAGGGCATACTCTAAGAACAAAAAGGGAGAGgtgagtcaccctgtcctcacatggtatcactcacctgcaatttgtagcca Alignment from Pairagon AAAAGAAATGATCGCCCAGCAGCGTGAATATAAAAAGAAAAAAGCTTTGAAAAAAGCACAGAGAATAAAAGAGTTGGAGCAGGAGCGAGAGGACCAGAAGGTGAAATGGCAGCAGTTCAACAACAGGGCGTACTCCAAGAACAAGAAAGGCCAG ggctgtgagccctattcatttatgcgaggacatgtctcctctctgtgcagGAAAGCAATGATTGCCCAACAACGTGAGTATAAAAAAAAAAAGGCTCTGAAGAAGTCACAGAGGATAAAAGATGTGGAACAGGAGAGAGAAGATCAGAAGGTAAAATGGCAACGGTTCAACAATAGGGCATACTCTAAGAACAAAAAGGGAGAGgtgagtcaccctgtcctcacatggtatcactcacctgcaatttgtagcca Alignment from Exonerate_protein2genome AAAAGAAATGATCGCCCAGCAGCGTGAATATAAAAAGAAAAAAGCTTTGAAAAAAGCACAGAGAATAAAAGAGTTGGAGCAGGAGCGAGAGGACCAGAAGGTGAAATGGCAGCAGTTCAACAACAGGGCGTACTCCAAGAACAAGAAAGGCCAG ggctgtgagccctattcatttatgcgaggacatgtctcctctctgtgcagGAAAGCAATGATTGCCCAACAACGTGAGTATAAAAAAAAAAAGGCTCTGAAGAAGTCACAGAGGATAAAAGATGTGGAACAGGAGAGAGAAGATCAGAAGGTAAAATGGCAACGGTTCAACAATAGGGCATACTCTAAGAACAAAAAGGGAGAGgtgagtcaccctgtcctcacatggtatcactcacctgcaatttgtagcca Alignment from Exonerate_coding2genome AAAAGAAATGATCGCCCAGCAGCGTGAATATAAAAAGAAAAAAGCTTTGAAAAAAGCACAGAGAATAAAAGAGTTGGAGCAGGAGCGAGAGGACCAGAAGGTGAAATGGCAGCAGTTCAACAACAGGGCGTACTCCAAGAACAAGAAAGGCCAG ggctgtgagccctattcatttatgcgaggacatgtctcctctctgtgcagGAAAGCAATGATTGCCCAACAACGTGAGTATAAAAAAAAAAAGGCTCTGAAGAAGTCACAGAGGATAAAAGATGTGGAACAGGAGAGAGAAGATCAGAAGGTAAAATGGCAACGGTTCAACAATAGGGCATACTCTAAGAACAAAAAGGGAGAGgtgagtcaccctgtcctcacatggtatcactcacctgcaatttgtagcca Alignment from GeneWise AAAAGAAATGATCGCCCAGCAGCGTGAATATAAAAAGAAAAAAGCTTTGAAAAAAGCACAGAGAATAAAAGAGTTGGAGCAGGAGCGAGAGGACCAGAAGGTGAAATGGCAGCAGTTCAACAACAGGGCGTACTCCAAGAACAAGAAAGGCCAG ggctgtgagccctattcatttatgcgaggacatgtctcctctctgtgcagGAAAGCAATGATTGCCCAACAACGTGAGTATAAAAAAAAAAAGGCTCTGAAGAAGTCACAGAGGATAAAAGATGTGGAACAGGAGAGAGAAGATCAGAAGGTAAAATGGCAACGGTTCAACAATAGGGCATACTCTAAGAACAAAAAGGGAGAGgtgagtcaccctgtcctcacatggtatcactcacctgcaatttgtagcca #### Snx15_ID1469_3 --> 0 - 1 Original Alignment GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTg gtcttacccagcccttgctaaggtctgcttctgtgtctccttctccacagGTAGTTGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGTGAATTAGCCTACACCCACCGGAATCTCTTCCAGGATCTCGAGGAGTTCTCGGCGTTCCCACAAGCCCAGGTGTTTggtaaaatttagacaacatctccagctgatgacatccagaatctccaaatg Alignment from CESAR GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTg gtcttacccagcccttgctaaggtctgcttctgtgtctccttctccacagGTAGTTGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGTGAATTAGCCTACACCCACCGGAATCTCTTCCAGGATCTCGAGGAGTTCTCGGCGTTCCCACAAGCCCAGGTGTTTggtaaaatttagacaacatctccagctgatgacatccagaatctccaaatg Alignment from Spaln_aa2Genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG gtcttacccagcccttgctaaggtctgcttctgtgtctccttctccacagGTAGTTGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGTGAATTAGCCTACACCCACCGGAATCTCTTCCAGGATCTCGAGGAGTTCTCGGCGTTCCCACAAGCCCAGGTGTTTGgtaaaatttagacaacatctccagctgatgacatccagaatctccaaatg Alignment from Spaln_nt2Genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG gtcttacccagcccttgctaaggtctgcttctgtgtctccttctccacagGTAGTTGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGTGAATTAGCCTACACCCACCGGAATCTCTTCCAGGATCTCGAGGAGTTCTCGGCGTTCCCACAAGCCCAGGTGTTTGgtaaaatttagacaacatctccagctgatgacatccagaatctccaaatg Alignment from Pairagon GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG gtcttacccagcccttgctaaggtctgcttctgtgtctccttctccacagGTAGTTGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGTGAATTAGCCTACACCCACCGGAATCTCTTCCAGGATCTCGAGGAGTTCTCGGCGTTCCCACAAGCCCAGGTGTTTGgtaaaatttagacaacatctccagctgatgacatccagaatctccaaatg Alignment from Exonerate_protein2genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG gtcttacccagcccttgctaaggtctgcttctgtgtctccttctccacagGTAGTTGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGTGAATTAGCCTACACCCACCGGAATCTCTTCCAGGATCTCGAGGAGTTCTCGGCGTTCCCACAAGCCCAGGTGTTTGgtaaaatttagacaacatctccagctgatgacatccagaatctccaaatg Alignment from Exonerate_coding2genome GAGGTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG gtcttacccagcccttgctaaggtctgcttctgtgtctccttctccaCAGGTAGTTGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGTGAATTAGCCTACACCCACCGGAATCTCTTCCAGGATCTCGAGGAGTTCTCGGCGTTCCCACAAGCCCAGGTGTTTGgtaaaatttagacaacatctccagctgatgacatccagaatctccaaatg Alignment from GeneWise ---TTCATCTCAAAGAAGGACCCAGAGGATATCAAAGAGGTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG gtcttacccagCCCTTGCTAAGGTCTGCTTCTGTGTCTCCTTCTCCACAGGTAGTTGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGTGAATTAGCCTACACCCACCGGAATCTCTTCCAGGATCTCGAGGAGTTCTCGGCGTTCCCACAAGCCCAGGTGTTTGgtaaaatttagacaacatctccagctgatgacatccagaatctccaaatg #### Snx15_ID1470_2 --> 0 - 0 Original Alignment TTCATCTCAAAGAAGGACCCAGAGGATATCAAAGAG tgtaataactcgtccagtctctctgtattgtctcatcttttaattaacagTTTGTTTCAAAAAAAGACCCAGGGGACACTAAGGATgtgagattgggacaaatacactgcttaaggattcttccattgcacctgtg Alignment from CESAR TTCATCTCAAAGAAGGACCCAGAGGATATCAAAGAG tgtaataactcgtccagtctctctgtattgtctcatcttttaattaacagTTTGTTTCAAAAAAAGACCCAGGGGACACTAAGGATgtgagattgggacaaatacactgcttaaggattcttccattgcacctgtg Alignment from Spaln_aa2Genome TTCATCTCAAAGAAGGACCCAGAGGATATCAAAGAG tgtaataactcgtccagtctctctgtattgtctcatcttttaattaacagTTTGTTTCAAAAAAAGACCCAGGGGACACTAAGGATgtgagattgggacaaatacactgcttaaggattcttccattgcacctgtg Alignment from Spaln_nt2Genome TTCATCTCAAAGAAGGACCCAGAGGATATCAAAGAG tgtaataactcgtccagtctctctgtattgtctcatcttttaattaacagTTTGTTTCAAAAAAAGACCCAGGGGACACTAAGGATgtgagattgggacaaatacactgcttaaggattcttccattgcacctgtg Alignment from Pairagon TTCATCTCAAAGAAGGACCCAGAGGATATCAAAGAG tgtaataactcgtccagtctctctgtattgtctcatcttttaattaacagTTTGTTTCAAAAAAAGACCCAGGGGACACTAAGGATgtgagattgggacaaatacactgcttaaggattcttccattgcacctgtg Alignment from Exonerate_protein2genome TTCATCTCAAAGAAGGACCCAGAGGATATCAAAGAG tgtaataactcgtccagtctctctgtattgtctcatcttttaattaacagTTTGTTTCAAAAAAAGACCCAGGGGACACTAAGGATgtgagattgggacaaatacactgcttaaggattcttccattgcacctgtg Alignment from Exonerate_coding2genome tgtaataactcgtccagtctctctgtattgtctcatcttttaattaacagtttgtttcaaaaaaagacccaggggacactaaggatgtgagattgggacaaatacactgcttaaggattcttccattgcacctgtg Alignment from GeneWise tgtaataactcgtccagtctctctgtattgtctcatcttttaattaacagtttgtttcaaaaaaagacccaggggacactaaggatgtgagattgggacaaatacactgcttaaggattcttccattgcacctgtg #### Snx32_ID1069_9 --> 1 - 0 Original Alignment gAGCTTCCTGAAGCTGGCAGAGCTCTTTGAACGGCTGAGA ttctcagggcagcatctgggtggggcccgtaacttttttttcttttttaggAGCTTCTTAACACTAGCAGAACTGTTTGATCGGCTGCGGgtatacagtaccctcaaccttagagctgcttggggataagtaaggtgcca Alignment from CESAR gAGCTTCCTGAAGCTGGCAGAGCTCTTTGAACGGCTGAGA ttctcagggcagcatctgggtggggcccgtaacttttttttcttttttaggAGCTTCTTAACACTAGCAGAACTGTTTGATCGGCTGCGGgtatacagtaccctcaaccttagagctgcttggggataagtaaggtgcca Alignment from Spaln_aa2Genome GAGCTTCCTGAAGCTGGCAGAGCTCTTTGAACGGCTGAGA ttctcagggcagcatctgggtggggcccgtaacttttttttcttttttagGAGCTTCTTAACACTAGCAGAACTGTTTGATCGGCTGCGGgtatacagtaccctcaaccttagagctgcttggggataagtaaggtgcca Alignment from Spaln_nt2Genome GAGCTTCCTGAAGCTGGCAGAGCTCTTTGAACGGCTGAGA ttctcagggcagcatctgggtggggcccgtaacttttttttcttttttagGAGCTTCTTAACACTAGCAGAACTGTTTGATCGGCTGCGGgtatacagtaccctcaaccttagagctgcttggggataagtaaggtgcca Alignment from Pairagon GAGCTTCCTGAAGCTGGCAGAGCTCTTTGAACGGCTGAGA ttctcagggcagcatctgggtggggcccgtaacttttttttcttttttagGAGCTTCTTAACACTAGCAGAACTGTTTGATCGGCTGCGGgtatacagtaccctcaaccttagagctgcttggggataagtaaggtgcca Alignment from Exonerate_protein2genome GAGCTTCCTGAAGCTGGCAGAGCTCTTTGAACGGCTGAGA ttctcagggcagcatctgggtggggcccgtaacttttttttcttttttagGAGCTTCTTAACACTAGCAGAACTGTTTGATCGGCTGCGGgtatacagtaccctcaaccttagagctgcttggggataagtaaggtgcca Alignment from Exonerate_coding2genome ttctcagggcagcatctgggtggggcccgtaacttttttttcttttttaggagcttcttaacactagcagaactgtttgatcggctgcgggtatacagtaccctcaaccttagagctgcttggggataagtaaggtgcca Alignment from GeneWise GAGCTTCCTGAAGCTGGCAGAGCTCTTTGAACGGCTGAGA ttctcagggcagcatctgggtggggcccgtaacttttttttcttttttagGAGCTTCTTAACACTAGCAGAACTGTTTGATCGGCTGCGGgtatacagtaccctcaaccttagagctgcttggggataagtaaggtgcca #### Snx32_ID1070_8 --> 2 - 2 Original Alignment gcCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGag atgtgcacataccttgaattgcaataacatattcttgaaatattctacaggcCTGGCAGACAACTATATTCCCATTTCAGCT---GTGAGCAGTCTTGAAACCCAGGAAGTGAACCAACTTAAAaggtcagtgtcatgcgacatagcattgcccacccatgaaccattattggggt Alignment from CESAR gcCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGag atgtgcacataccttgaattgcaataacatattcttgaaatattctacaggcCTGGCAGACAACTATATTCCCATTTCAGCTGTG---AGCAGTCTTGAAACCCAGGAAGTGAACCAACTTAAAaggtcagtgtcatgcgacatagcattgcccacccatgaaccattattggggt Alignment from Spaln_aa2Genome GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG atgtgcacataccttgaattgcaataacatattcttgaaatattctacagGCCTGGCAGACAACTATATTCCCATTTCA---GCTGTGAGCAGTCTTGAAACCCAGGAAGTGAACCAACTTAAAAGgtcagtgtcatgcgacatagcattgcccacccatgaaccattattggggt Alignment from Spaln_nt2Genome GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG atgtgcacataccttgaattgcaataacatattcttgaaatattctacagGCCTGGCAGACAACTATATTCCCATTTCAGCTG---TGAGCAGTCTTGAAACCCAGGAAGTGAACCAACTTAAAAGgtcagtgtcatgcgacatagcattgcccacccatgaaccattattggggt Alignment from Pairagon GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG atgtgcacataccttgaattgcaataacatattcttgaaatattctacagGCCTGGCAGACAACTATATTCCCATTTCAGCTG---TGAGCAGTCTTGAAACCCAGGAAGTGAACCAACTTAAAAGgtcagtgtcatgcgacatagcattgcccacccatgaaccattattggggt Alignment from Exonerate_protein2genome GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG atgtgcacataccttgaattgcaataacatattcttgaaatattctacagGCCTGGCAGACAACTATATTCCCATTTCA---GCTGTGAGCAGTCTTGAAACCCAGGAAGTGAACCAACTTAAAAGgtcagtgtcatgcgacatagcattgcccacccatgaaccattattggggt Alignment from Exonerate_coding2genome atgtgcacataccttgaattgcaataacatattcttgaaatattctacaggcctggcagacaactatattcccatttcagctgtgagcagtcttgaaacccaggaagtgaaccaacttaaaaggtcagtgtcatgcgacatagcattgcccacccatgaaccattattggggt Alignment from GeneWise GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAGGAGCTT atgtgcacataccttgaattgcaataacatattcttgaaatattctacagGCCTGGCAGACAACTATATTCCCATTTCAGCT---GTGAGCAGTCTTGAAACCCAGGAAGTGAACCAACTTAAAAGGTCAGTgtcatgcgacatagcattgcccacccatgaaccattattggggt #### Sorbs1_ID7922_7 --> 2 - 0 Original Alignment atCCTGCCTCAGAGAGAAGAGCGGGTGAGCAGGACCCAGTACCAACCCCAGCAGAACTCACTTCGCCCGGCAGGGCTTCTGAGAGAAGGGCAAAGGATGCTAGCAGACGGGTGGTGAGGAGCACACAGGACCTGAGCGATGTGTCTACAGATGAAGTGGGCATCCCACTCCGG ctttctagagttctccaaagtgccagttccatctgaacgtctggaatcagatCCTGCCTCAGAGAAAAGAGCAGGTGAGCAGGAGCCAGTCCCAACCCCAGCAGAGCTTACTTCACCAGGTCGGGCTTCTGAGAGAAGGGTAGAGGATGCCACTAGACGGGTAGTGCGAAGCACACAAGACCTGAGTGATGTGTCTACAGATGAGGTTGGCATCCCACTGCGGgtaattgaattttgcaatccttaacaacagtgatttcaccctgcagtagt Alignment from CESAR atCCTGCCTCAGAGAGAAGAGCGGGTGAGCAGGACCCAGTACCAACCCCAGCAGAACTCACTTCGCCCGGCAGGGCTTCTGAGAGAAGGGCAAAGGATGCTAGCAGACGGGTGGTGAGGAGCACACAGGACCTGAGCGATGTGTCTACAGATGAAGTGGGCATCCCACTCCGG ctttctagagttctccaaagtgccagttccatctgaacgtctggaatcagatCCTGCCTCAGAGAAAAGAGCAGGTGAGCAGGAGCCAGTCCCAACCCCAGCAGAGCTTACTTCACCAGGTCGGGCTTCTGAGAGAAGGGTAGAGGATGCCACTAGACGGGTAGTGCGAAGCACACAAGACCTGAGTGATGTGTCTACAGATGAGGTTGGCATCCCACTGCGGgtaattgaattttgcaatccttaacaacagtgatttcaccctgcagtagt Alignment from Spaln_aa2Genome ATCCTGCCTCAGAGAGAAGAGCGGGTGAGCAGGACCCAGTACCAACCCCAGCAGAACTCACTTCGCCCGGCAGGGCTTCTGAGAGAAGGGCAAAGGATGCTAGCAGACGGGTGGTGAGGAGCACACAGGACCTGAGCGATGTGTCTACAGATGAAGTGGGCATCCCACTCCGG ctttctagagttctccaaagtgccagttccatctgaacgtctggaatcagATCCTGCCTCAGAGAAAAGAGCAGGTGAGCAGGAGCCAGTCCCAACCCCAGCAGAGCTTACTTCACCAGGTCGGGCTTCTGAGAGAAGGGTAGAGGATGCCACTAGACGGGTAGTGCGAAGCACACAAGACCTGAGTGATGTGTCTACAGATGAGGTTGGCATCCCACTGCGGgtaattgaattttgcaatccttaacaacagtgatttcaccctgcagtagt Alignment from Spaln_nt2Genome ATCCTGCCTCAGAGAGAAGAGCGGGTGAGCAGGACCCAGTACCAACCCCAGCAGAACTCACTTCGCCCGGCAGGGCTTCTGAGAGAAGGGCAAAGGATGCTAGCAGACGGGTGGTGAGGAGCACACAGGACCTGAGCGATGTGTCTACAGATGAAGTGGGCATCCCACTCCGG ctttctagagttctccaaagtgccagttccatctgaacgtctggaatcagATCCTGCCTCAGAGAAAAGAGCAGGTGAGCAGGAGCCAGTCCCAACCCCAGCAGAGCTTACTTCACCAGGTCGGGCTTCTGAGAGAAGGGTAGAGGATGCCACTAGACGGGTAGTGCGAAGCACACAAGACCTGAGTGATGTGTCTACAGATGAGGTTGGCATCCCACTGCGGgtaattgaattttgcaatccttaacaacagtgatttcaccctgcagtagt Alignment from Pairagon ATCCTGCCTCAGAGAGAAGAGCGGGTGAGCAGGACCCAGTACCAACCCCAGCAGAACTCACTTCGCCCGGCAGGGCTTCTGAGAGAAGGGCAAAGGATGCTAGCAGACGGGTGGTGAGGAGCACACAGGACCTGAGCGATGTGTCTACAGATGAAGTGGGCATCCCACTCCGG ctttctagagttctccaaagtgccagttccatctgaacgtctggaatcagATCCTGCCTCAGAGAAAAGAGCAGGTGAGCAGGAGCCAGTCCCAACCCCAGCAGAGCTTACTTCACCAGGTCGGGCTTCTGAGAGAAGGGTAGAGGATGCCACTAGACGGGTAGTGCGAAGCACACAAGACCTGAGTGATGTGTCTACAGATGAGGTTGGCATCCCACTGCGGgtaattgaattttgcaatccttaacaacagtgatttcaccctgcagtagt Alignment from Exonerate_protein2genome ATCCTGCCTCAGAGAGAAGAGCGGGTGAGCAGGACCCAGTACCAACCCCAGCAGAACTCACTTCGCCCGGCAGGGCTTCTGAGAGAAGGGCAAAGGATGCTAGCAGACGGGTGGTGAGGAGCACACAGGACCTGAGCGATGTGTCTACAGATGAAGTGGGCATCCCACTCCGG ctttctagagttctccaaagtgccagttccatctgaacgtctggaatcagATCCTGCCTCAGAGAAAAGAGCAGGTGAGCAGGAGCCAGTCCCAACCCCAGCAGAGCTTACTTCACCAGGTCGGGCTTCTGAGAGAAGGGTAGAGGATGCCACTAGACGGGTAGTGCGAAGCACACAAGACCTGAGTGATGTGTCTACAGATGAGGTTGGCATCCCACTGCGGgtaattgaattttgcaatccttaacaacagtgatttcaccctgcagtagt Alignment from Exonerate_coding2genome ctttctagagttctccaaagtgccagttccatctgaacgtctggaatcagatcctgcctcagagaaaagagcaggtgagcaggagccagtcccaaccccagcagagcttacttcaccaggtcgggcttctgagagaagggtagaggatgccactagacgggtagtgcgaagcacacaagacctgagtgatgtgtctacagatgaggttggcatcccactgcgggtaattgaattttgcaatccttaacaacagtgatttcaccctgcagtagt Alignment from GeneWise ATCCTGCCTCAGAGAGAAGAGCGGGTGAGCAGGACCCAGTACCAACCCCAGCAGAACTCACTTCGCCCGGCAGGGCTTCTGAGAGAAGGGCAAAGGATGCTAGCAGACGGGTGGTGAGGAGCACACAGGACCTGAGCGATGTGTCTACAGATGAAGTGGGCATCCCACTCCGG ctttctagagttctccaaagtgccagttccatctgaacgtctggaatcagATCCTGCCTCAGAGAAAAGAGCAGGTGAGCAGGAGCCAGTCCCAACCCCAGCAGAGCTTACTTCACCAGGTCGGGCTTCTGAGAGAAGGGTAGAGGATGCCACTAGACGGGTAGTGCGAAGCACACAAGACCTGAGTGATGTGTCTACAGATGAGGTTGGCATCCCACTGCGGgtaattgaattttgcaatccttaacaacagtgatttcaccctgcagtagt #### Sorbs1_ID7936_2 --> 2 - 1 Original Alignment aaTGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGACAAAg tctacatgtgtgggtgctagggctattggtggtgttttgtttaactctaggaTGTGATCTTGGCAGCTCTAAAGCTGTAGTGAAAGGTTTGGTGTCTGGTAATCATGGAGCGGAAAAAggtaagcaagtcagtgagaatcctggtctggcatttagatctgctcctagt Alignment from CESAR aaTGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGACAAAg tctacatgtgtgggtgctagggctattggtggtgttttgtttaactctaggaTGTGATCTTGGCAGCTCTAAAGCTGTAGTGAAAGGTTTGGTGTCTGGTAATCATGGAGCGGAAAAAggtaagcaagtcagtgagaatcctggtctggcatttagatctgctcctagt Alignment from Spaln_aa2Genome AATGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGACAAAG tctacatgtgtgggtgctagggctattggtggtgttttgtttaactctagGATGTGATCTTGGCAGCTCTAAAGCTGTAGTGAAAGGTTTGGTGTCTGGTAATCATGGAGCGGAAAAAGgtaagcaagtcagtgagaatcctggtctggcatttagatctgctcctagt Alignment from Spaln_nt2Genome AATGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGACAAAG tctacatgtgtgggtgctagggctattggtggtgttttgtttaactctagGATGTGATCTTGGCAGCTCTAAAGCTGTAGTGAAAGGTTTGGTGTCTGGTAATCATGGAGCGGAAAAAGgtaagcaagtcagtgagaatcctggtctggcatttagatctgctcctagt Alignment from Pairagon AATGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGACAAAG tctacatgtgtgggtgctagggctattggtggtgttttgtttaactctagGATGTGATCTTGGCAGCTCTAAAGCTGTAGTGAAAGGTTTGGTGTCTGGTAATCATGGAGCGGAAAAAGgtaagcaagtcagtgagaatcctggtctggcatttagatctgctcctagt Alignment from Exonerate_protein2genome TGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGACAAAG tctacatgtgtgggtgctagggctattggtggtgttttgtttaactctaggaTGTGATCTTGGCAGCTCTAAAGCTGTAGTGAAAGGTTTGGTGTCTGGTAATCATGGAGCGGAAAAAGgtaagcaagtcagtgagaatcctggtctggcatttagatctgctcctagt Alignment from Exonerate_coding2genome TGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGACAAAG tctacatgtgtgggtgctagggctattggtggtgttttgtttaactctaggaTGTGATCTTGGCAGCTCTAAAGCTGTAGTGAAAGGTTTGGTGTCTGGTAATCATGGAGCGGAAAAAGgtaagcaagtcagtgagaatcctggtctggcatttagatctgctcctagt Alignment from GeneWise AGTTCTGAATGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGACAAAG tctacatgtgtgggtgctagggctattggtggtgttttgtttaACTCTAGGATGTGATCTTGGCAGCTCTAAAGCTGTAGTGAAAGGTTTGGTGTCTGGTAATCATGGAGCGGAAAAAGgtaagcaagtcagtgagaatcctggtctggcatttagatctgctcctagt #### Sorcs3_ID10602_9 --> 0 - 0 Original Alignment GACATGCACATTATCAGTACCGATGAGAACCAAGTGTTTGCAGCCGTCCAAGAATGGAACCAGAATGACACCTACAACCTCTACATCTCAGACACACGTGGGATCTACTTTACCCTGGCTATGGAGAACATTAAGAGCAGCCGAGGTCTAATGGGAAACATCATTATTGAATTATATGAG gaagcgcatattacacttacccttgctttatttgcctttgccttttgtagGACATGCACACTATCAGCACTGAAGAAAATCAAGTTTTTGCAGCTGTGCAAGAATGGAACCAGAATGATACCCACAATCTCCATATATCAGACACCTGTGGTATTCGGTTCACCCTCACTATGGAGAACATTAAGAGTAGCCGGGGACTAATGGGAAACATAGTCATTGATTTGTATGAGgtaagtttccctttctatagatttccctgtctcttcaatgtatattgcct Alignment from CESAR GACATGCACATTATCAGTACCGATGAGAACCAAGTGTTTGCAGCCGTCCAAGAATGGAACCAGAATGACACCTACAACCTCTACATCTCAGACACACGTGGGATCTACTTTACCCTGGCTATGGAGAACATTAAGAGCAGCCGAGGTCTAATGGGAAACATCATTATTGAATTATATGAG gaagcgcatattacacttacccttgctttatttgcctttgccttttgtagGACATGCACACTATCAGCACTGAAGAAAATCAAGTTTTTGCAGCTGTGCAAGAATGGAACCAGAATGATACCCACAATCTCCATATATCAGACACCTGTGGTATTCGGTTCACCCTCACTATGGAGAACATTAAGAGTAGCCGGGGACTAATGGGAAACATAGTCATTGATTTGTATGAGgtaagtttccctttctatagatttccctgtctcttcaatgtatattgcct Alignment from Spaln_aa2Genome GACATGCACATTATCAGTACCGATGAGAACCAAGTGTTTGCAGCCGTCCAAGAATGGAACCAGAATGACACCTACAACCTCTACATCTCAGACACACGTGGGATCTACTTTACCCTGGCTATGGAGAACATTAAGAGCAGCCGAGGTCTAATGGGAAACATCATTATTGAATTATATGAG gaagcgcatattacacttacccttgctttatttgcctttgccttttgtagGACATGCACACTATCAGCACTGAAGAAAATCAAGTTTTTGCAGCTGTGCAAGAATGGAACCAGAATGATACCCACAATCTCCATATATCAGACACCTGTGGTATTCGGTTCACCCTCACTATGGAGAACATTAAGAGTAGCCGGGGACTAATGGGAAACATAGTCATTGATTTGTATGAGgtaagtttccctttctatagatttccctgtctcttcaatgtatattgcct Alignment from Spaln_nt2Genome GACATGCACATTATCAGTACCGATGAGAACCAAGTGTTTGCAGCCGTCCAAGAATGGAACCAGAATGACACCTACAACCTCTACATCTCAGACACACGTGGGATCTACTTTACCCTGGCTATGGAGAACATTAAGAGCAGCCGAGGTCTAATGGGAAACATCATTATTGAATTATATGAG gaagcgcatattacacttacccttgctttatttgcctttgccttttgtagGACATGCACACTATCAGCACTGAAGAAAATCAAGTTTTTGCAGCTGTGCAAGAATGGAACCAGAATGATACCCACAATCTCCATATATCAGACACCTGTGGTATTCGGTTCACCCTCACTATGGAGAACATTAAGAGTAGCCGGGGACTAATGGGAAACATAGTCATTGATTTGTATGAGgtaagtttccctttctatagatttccctgtctcttcaatgtatattgcct Alignment from Pairagon GACATGCACATTATCAGTACCGATGAGAACCAAGTGTTTGCAGCCGTCCAAGAATGGAACCAGAATGACACCTACAACCTCTACATCTCAGACACACGTGGGATCTACTTTACCCTGGCTATGGAGAACATTAAGAGCAGCCGAGGTCTAATGGGAAACATCATTATTGAATTATATGAG gaagcgcatattacacttacccttgctttatttgcctttgccttttgtagGACATGCACACTATCAGCACTGAAGAAAATCAAGTTTTTGCAGCTGTGCAAGAATGGAACCAGAATGATACCCACAATCTCCATATATCAGACACCTGTGGTATTCGGTTCACCCTCACTATGGAGAACATTAAGAGTAGCCGGGGACTAATGGGAAACATAGTCATTGATTTGTATGAGgtaagtttccctttctatagatttccctgtctcttcaatgtatattgcct Alignment from Exonerate_protein2genome GACATGCACATTATCAGTACCGATGAGAACCAAGTGTTTGCAGCCGTCCAAGAATGGAACCAGAATGACACCTACAACCTCTACATCTCAGACACACGTGGGATCTACTTTACCCTGGCTATGGAGAACATTAAGAGCAGCCGAGGTCTAATGGGAAACATCATTATTGAATTATATGAG gaagcgcatattacacttacccttgctttatttgcctttgccttttgtagGACATGCACACTATCAGCACTGAAGAAAATCAAGTTTTTGCAGCTGTGCAAGAATGGAACCAGAATGATACCCACAATCTCCATATATCAGACACCTGTGGTATTCGGTTCACCCTCACTATGGAGAACATTAAGAGTAGCCGGGGACTAATGGGAAACATAGTCATTGATTTGTATGAGgtaagtttccctttctatagatttccctgtctcttcaatgtatattgcct Alignment from Exonerate_coding2genome GACATGCACATTATCAGTACCGATGAGAACCAAGTGTTTGCAGCCGTCCAAGAATGGAACCAGAATGACACCTACAACCTCTACATCTCAGACACACGTGGGATCTACTTTACCCTGGCTATGGAGAACATTAAGAGCAGCCGAGGTCTAATGGGAAACATCATTATTGAATTATATGAG gaagcgcatattacacttacccttgctttatttgcctttgccttttgtagGACATGCACACTATCAGCACTGAAGAAAATCAAGTTTTTGCAGCTGTGCAAGAATGGAACCAGAATGATACCCACAATCTCCATATATCAGACACCTGTGGTATTCGGTTCACCCTCACTATGGAGAACATTAAGAGTAGCCGGGGACTAATGGGAAACATAGTCATTGATTTGTATGAGgtaagtttccctttctatagatttccctgtctcttcaatgtatattgcct Alignment from GeneWise GACATGCACATTATCAGTACCGATGAGAACCAAGTGTTTGCAGCCGTCCAAGAATGGAACCAGAATGACACCTACAACCTCTACATCTCAGACACACGTGGGATCTACTTTACCCTGGCTATGGAGAACATTAAGAGCAGCCGAGGTCTAATGGGAAACATCATTATTGAATTATATGAG gaagcgcatattacacttacccttgctttatttgcctttgccttttgtagGACATGCACACTATCAGCACTGAAGAAAATCAAGTTTTTGCAGCTGTGCAAGAATGGAACCAGAATGATACCCACAATCTCCATATATCAGACACCTGTGGTATTCGGTTCACCCTCACTATGGAGAACATTAAGAGTAGCCGGGGACTAATGGGAAACATAGTCATTGATTTGTATGAGgtaagtttccctttctatagatttccctgtctcttcaatgtatattgcct #### Sorcs3_ID10609_13 --> 0 - 2 Original Alignment ATCTTTGATGAAGAATACAATGTCTGGTTCCTAGACTGGGGTGGTGCTCTGGTGGCCATGAAGCACACACCTCTGCCAGTCAGGCATTTGtg ggatactgttaattgtgcagagctactgtgtttaccttgcttttctttagGTTTTTGGTGAAAAATATAATGTCTGGTTTGTAGACTGGGGTGGTGCTCTGGTGGCCATGAAGCATACACCCTTGCCTGTCCGGCATTTGtggtaaacaagtctatagcctgctataaggcaactcagggctgctgttatga Alignment from CESAR ATCTTTGATGAAGAATACAATGTCTGGTTCCTAGACTGGGGTGGTGCTCTGGTGGCCATGAAGCACACACCTCTGCCAGTCAGGCATTTGtg ggatactgttaattgtgcagagctactgtgtttaccttgcttttctttagGTTTTTGGTGAAAAATATAATGTCTGGTTTGTAGACTGGGGTGGTGCTCTGGTGGCCATGAAGCATACACCCTTGCCTGTCCGGCATTTGtggtaaacaagtctatagcctgctataaggcaactcagggctgctgttatga Alignment from Spaln_aa2Genome ATCTTTGATGAAGAATACAATGTCTGGTTCCTAGACTGGGGTGGTGCTCTGGTGGCCATGAAGCACACACCTCTGCCAGTCAGGCATTTGTG ggatactgttaattgtgcagagctactgtgtttaccttgcttttctttagGTTTTTGGTGAAAAATATAATGTCTGGTTTGTAGACTGGGGTGGTGCTCTGGTGGCCATGAAGCATACACCCTTGCCTGTCCGGCATTTGTGgtaaacaagtctatagcctgctataaggcaactcagggctgctgttatga Alignment from Spaln_nt2Genome ATCTTTGATGAAGAATACAATGTCTGGTTCCTAGACTGGGGTGGTGCTCTGGTGGCCATGAAGCACACACCTCTGCCAGTCAGGCATTTGTG ggatactgttaattgtgcagagctactgtgtttaccttgcttttctttagGTTTTTGGTGAAAAATATAATGTCTGGTTTGTAGACTGGGGTGGTGCTCTGGTGGCCATGAAGCATACACCCTTGCCTGTCCGGCATTTGTGgtaaacaagtctatagcctgctataaggcaactcagggctgctgttatga Alignment from Pairagon ATCTTTGATGAAGAATACAATGTCTGGTTCCTAGACTGGGGTGGTGCTCTGGTGGCCATGAAGCACACACCTCTGCCAGTCAGGCATTTGTG ggatactgttaattgtgcagagctactgtgtttaccttgcttttctttagGTTTTTGGTGAAAAATATAATGTCTGGTTTGTAGACTGGGGTGGTGCTCTGGTGGCCATGAAGCATACACCCTTGCCTGTCCGGCATTTGTGgtaaacaagtctatagcctgctataaggcaactcagggctgctgttatga Alignment from Exonerate_protein2genome ATCTTTGATGAAGAATACAATGTCTGGTTCCTAGACTGGGGTGGTGCTCTGGTGGCCATGAAGCACACACCTCTGCCAGTCAGGCATTTGTG ggatactgttaattgtgcagagctactgtgtttaccttgcttttctttagGTTTTTGGTGAAAAATATAATGTCTGGTTTGTAGACTGGGGTGGTGCTCTGGTGGCCATGAAGCATACACCCTTGCCTGTCCGGCATTTGTGgtaaacaagtctatagcctgctataaggcaactcagggctgctgttatga Alignment from Exonerate_coding2genome ATCTTTGATGAAGAATACAATGTCTGGTTCCTAGACTGGGGTGGTGCTCTGGTGGCCATGAAGCACACACCTCTGCCAGTCAGGCATTTGTG ggatactgttaattgtgcagagctactgtgtttaccttgcttttctttagGTTTTTGGTGAAAAATATAATGTCTGGTTTGTAGACTGGGGTGGTGCTCTGGTGGCCATGAAGCATACACCCTTGCCTGTCCGGCATTTGTGgtaaacaagtctatagcctgctataaggcaactcagggctgctgttatga Alignment from GeneWise ATCTTTGATGAAGAATACAATGTCTGGTTCCTAGACTGGGGTGGTGCTCTGGTGGCCATGAAGCACACACCTCTGCCAGTCAGGCATTTGTG ggatactgttaattgtgcagagctactgtgtttaccttgcttttctttagGTTTTTGGTGAAAAATATAATGTCTGGTTTGTAGACTGGGGTGGTGCTCTGGTGGCCATGAAGCATACACCCTTGCCTGTCCGGCATTTGTGgtaaacaagtctatagcctgctataaggcaactcagggctgctgttatga #### Sorcs3_ID10624_17 --> 1 - 2 Original Alignment tGACTATGGCTATGAGAGACATGGAGAGAGCCAGTGTGTCCCAGCTTTCTGGTACAACCCAGCTTCCCCTTCAAAGGACTGCAGCCTTGGTCAAAGCTACCTTAACAGCACTgg aatatctagatatataactcattaaataatactctattttactatttcagtGACTATGGCTATGAGAGACATGGTGAGAGCCAATGTGTCCCAGCTTTCTGGTACAACCCAGCTTCACCTTCAAAGGACTGCAGCCTTGGTCAAAGCTACCTCAACAGCACTgggtgagtctatgagactgacctgctccaggttctcttattttcattgttct Alignment from CESAR tGACTATGGCTATGAGAGACATGGAGAGAGCCAGTGTGTCCCAGCTTTCTGGTACAACCCAGCTTCCCCTTCAAAGGACTGCAGCCTTGGTCAAAGCTACCTTAACAGCACTgg aatatctagatatataactcattaaataatactctattttactatttcagtGACTATGGCTATGAGAGACATGGTGAGAGCCAATGTGTCCCAGCTTTCTGGTACAACCCAGCTTCACCTTCAAAGGACTGCAGCCTTGGTCAAAGCTACCTCAACAGCACTgggtgagtctatgagactgacctgctccaggttctcttattttcattgttct Alignment from Spaln_aa2Genome TGACTATGGCTATGAGAGACATGGAGAGAGCCAGTGTGTCCCAGCTTTCTGGTACAACCCAGCTTCCCCTTCAAAGGACTGCAGCCTTGGTCAAAGCTACCTTAACAGCACTGG aatatctagatatataactcattaaataatactctattttactatttcagTGACTATGGCTATGAGAGACATGGTGAGAGCCAATGTGTCCCAGCTTTCTGGTACAACCCAGCTTCACCTTCAAAGGACTGCAGCCTTGGTCAAAGCTACCTCAACAGCACTGGgtgagtctatgagactgacctgctccaggttctcttattttcattgttct Alignment from Spaln_nt2Genome TGACTATGGCTATGAGAGACATGGAGAGAGCCAGTGTGTCCCAGCTTTCTGGTACAACCCAGCTTCCCCTTCAAAGGACTGCAGCCTTGGTCAAAGCTACCTTAACAGCACTGG aatatctagatatataactcattaaataatactctattttactatttcagTGACTATGGCTATGAGAGACATGGTGAGAGCCAATGTGTCCCAGCTTTCTGGTACAACCCAGCTTCACCTTCAAAGGACTGCAGCCTTGGTCAAAGCTACCTCAACAGCACTGGgtgagtctatgagactgacctgctccaggttctcttattttcattgttct Alignment from Pairagon TGACTATGGCTATGAGAGACATGGAGAGAGCCAGTGTGTCCCAGCTTTCTGGTACAACCCAGCTTCCCCTTCAAAGGACTGCAGCCTTGGTCAAAGCTACCTTAACAGCACTGG aatatctagatatataactcattaaataatactctattttactatttcagTGACTATGGCTATGAGAGACATGGTGAGAGCCAATGTGTCCCAGCTTTCTGGTACAACCCAGCTTCACCTTCAAAGGACTGCAGCCTTGGTCAAAGCTACCTCAACAGCACTGGgtgagtctatgagactgacctgctccaggttctcttattttcattgttct Alignment from Exonerate_protein2genome TGACTATGGCTATGAGAGACATGGAGAGAGCCAGTGTGTCCCAGCTTTCTGGTACAACCCAGCTTCCCCTTCAAAGGACTGCAGCCTTGGTCAAAGCTACCTTAACAGCACTGG aatatctagatatataactcattaaataatactctattttactatttcagTGACTATGGCTATGAGAGACATGGTGAGAGCCAATGTGTCCCAGCTTTCTGGTACAACCCAGCTTCACCTTCAAAGGACTGCAGCCTTGGTCAAAGCTACCTCAACAGCACTGGgtgagtctatgagactgacctgctccaggttctcttattttcattgttct Alignment from Exonerate_coding2genome TGACTATGGCTATGAGAGACATGGAGAGAGCCAGTGTGTCCCAGCTTTCTGGTACAACCCAGCTTCCCCTTCAAAGGACTGCAGCCTTGGTCAAAGCTACCTTAACAGCACTGG aatatctagatatataactcattaaataatactctattttactatttcagTGACTATGGCTATGAGAGACATGGTGAGAGCCAATGTGTCCCAGCTTTCTGGTACAACCCAGCTTCACCTTCAAAGGACTGCAGCCTTGGTCAAAGCTACCTCAACAGCACTGGgtgagtctatgagactgacctgctccaggttctcttattttcattgttct Alignment from GeneWise TGACTATGGCTATGAGAGACATGGAGAGAGCCAGTGTGTCCCAGCTTTCTGGTACAACCCAGCTTCCCCTTCAAAGGACTGCAGCCTTGGTCAAAGCTACCTTAACAGCACTGG aatatctagatatataactcattaaataatactctattttactatttcagTGACTATGGCTATGAGAGACATGGTGAGAGCCAATGTGTCCCAGCTTTCTGGTACAACCCAGCTTCACCTTCAAAGGACTGCAGCCTTGGTCAAAGCTACCTCAACAGCACTGGgtgagtctatgagactgacctgctccaggttctcttattttcattgttct #### Sorcs3_ID10630_20 --> 2 - 0 Original Alignment gtCCAGTGGAACACGTTCACCTTCGAGTCCCATTCGTCGCAATACGGAATAAGGACGTCAACATCAGTGCAGTTGTGTGGCCCAGTCAGCTAGGGACCCTCACCTACTTCTGGTGGTTTGGAAATAGCACAAAG agcaaatggttcttgctttgtatacatacaaacctcgcttttccctgcaggtCCAGTGGAACACGTTCACCTTCGAGTCCCATTTGTTGCAATACGGAATAAGGATGTTAACATCAGGGCAGTTGTGTGGCCCAGTCAGCTAGGAACTCTTAACTATTTCTGGTGGTTTGGAAATAGCACAAAGgtactgttcctgcctagatccttactaccacctagatatgaactagatcc Alignment from CESAR gtCCAGTGGAACACGTTCACCTTCGAGTCCCATTCGTCGCAATACGGAATAAGGACGTCAACATCAGTGCAGTTGTGTGGCCCAGTCAGCTAGGGACCCTCACCTACTTCTGGTGGTTTGGAAATAGCACAAAG agcaaatggttcttgctttgtatacatacaaacctcgcttttccctgcaggtCCAGTGGAACACGTTCACCTTCGAGTCCCATTTGTTGCAATACGGAATAAGGATGTTAACATCAGGGCAGTTGTGTGGCCCAGTCAGCTAGGAACTCTTAACTATTTCTGGTGGTTTGGAAATAGCACAAAGgtactgttcctgcctagatccttactaccacctagatatgaactagatcc Alignment from Spaln_aa2Genome GTCCAGTGGAACACGTTCACCTTCGAGTCCCATTCGTCGCAATACGGAATAAGGACGTCAACATCAGTGCAGTTGTGTGGCCCAGTCAGCTAGGGACCCTCACCTACTTCTGGTGGTTTGGAAATAGCACAAAG agcaaatggttcttgctttgtatacatacaaacctcgcttttccctgcagGTCCAGTGGAACACGTTCACCTTCGAGTCCCATTTGTTGCAATACGGAATAAGGATGTTAACATCAGGGCAGTTGTGTGGCCCAGTCAGCTAGGAACTCTTAACTATTTCTGGTGGTTTGGAAATAGCACAAAGgtactgttcctgcctagatccttactaccacctagatatgaactagatcc Alignment from Spaln_nt2Genome GTCCAGTGGAACACGTTCACCTTCGAGTCCCATTCGTCGCAATACGGAATAAGGACGTCAACATCAGTGCAGTTGTGTGGCCCAGTCAGCTAGGGACCCTCACCTACTTCTGGTGGTTTGGAAATAGCACAAAG agcaaatggttcttgctttgtatacatacaaacctcgcttttccctgcagGTCCAGTGGAACACGTTCACCTTCGAGTCCCATTTGTTGCAATACGGAATAAGGATGTTAACATCAGGGCAGTTGTGTGGCCCAGTCAGCTAGGAACTCTTAACTATTTCTGGTGGTTTGGAAATAGCACAAAGgtactgttcctgcctagatccttactaccacctagatatgaactagatcc Alignment from Pairagon GTCCAGTGGAACACGTTCACCTTCGAGTCCCATTCGTCGCAATACGGAATAAGGACGTCAACATCAGTGCAGTTGTGTGGCCCAGTCAGCTAGGGACCCTCACCTACTTCTGGTGGTTTGGAAATAGCACAAAG agcaaatggttcttgctttgtatacatacaaacctcgcttttccctgcagGTCCAGTGGAACACGTTCACCTTCGAGTCCCATTTGTTGCAATACGGAATAAGGATGTTAACATCAGGGCAGTTGTGTGGCCCAGTCAGCTAGGAACTCTTAACTATTTCTGGTGGTTTGGAAATAGCACAAAGgtactgttcctgcctagatccttactaccacctagatatgaactagatcc Alignment from Exonerate_protein2genome GTCCAGTGGAACACGTTCACCTTCGAGTCCCATTCGTCGCAATACGGAATAAGGACGTCAACATCAGTGCAGTTGTGTGGCCCAGTCAGCTAGGGACCCTCACCTACTTCTGGTGGTTTGGAAATAGCACAAAG agcaaatggttcttgctttgtatacatacaaacctcgcttttccctgcagGTCCAGTGGAACACGTTCACCTTCGAGTCCCATTTGTTGCAATACGGAATAAGGATGTTAACATCAGGGCAGTTGTGTGGCCCAGTCAGCTAGGAACTCTTAACTATTTCTGGTGGTTTGGAAATAGCACAAAGgtactgttcctgcctagatccttactaccacctagatatgaactagatcc Alignment from Exonerate_coding2genome GTCCAGTGGAACACGTTCACCTTCGAGTCCCATTCGTCGCAATACGGAATAAGGACGTCAACATCAGTGCAGTTGTGTGGCCCAGTCAGCTAGGGACCCTCACCTACTTCTGGTGGTTTGGAAATAGCACAAAG agcaaatggttcttgctttgtatacatacaaacctcgcttttccctgcagGTCCAGTGGAACACGTTCACCTTCGAGTCCCATTTGTTGCAATACGGAATAAGGATGTTAACATCAGGGCAGTTGTGTGGCCCAGTCAGCTAGGAACTCTTAACTATTTCTGGTGGTTTGGAAATAGCACAAAGgtactgttcctgcctagatccttactaccacctagatatgaactagatcc Alignment from GeneWise GTCCAGTGGAACACGTTCACCTTCGAGTCCCATTCGTCGCAATACGGAATAAGGACGTCAACATCAGTGCAGTTGTGTGGCCCAGTCAGCTAGGGACCCTCACCTACTTCTGGTGGTTTGGAAATAGCACAAAG agcaaatggttcttgctttgtatacatacaaacctcgcttttccctgcagGTCCAGTGGAACACGTTCACCTTCGAGTCCCATTTGTTGCAATACGGAATAAGGATGTTAACATCAGGGCAGTTGTGTGGCCCAGTCAGCTAGGAACTCTTAACTATTTCTGGTGGTTTGGAAATAGCACAAAGgtactgttcctgcctagatccttactaccacctagatatgaactagatcc #### Sptbn2_ID608_3 --> 0 - 0 Original Alignment CCAAAACCTACCAAGGGCCGAATGCGGATTCACTGCCTGGAGAATGTAGATAAAGCGCTGCAGTTCCTGAAGGAGCAGAAGGTGCACTTGGAAAACATGGGCTCCCATGACATTGTGGACGGAAACCACCGTCTGACCCTTGGGCTAGTGTGGACCATCATCCTCCGATTTCAG gtttttgtgtgtaactaaatactgttttattgctgtggtccctttcctagTCAAAGCCAACAAAAGGCCGGATGCAGATTCACTGCCTAGAAAATGTAGATAAAGCACTGCAGTTCCTGAAGGAACAGAAAGTGCACTTGCAGAACACAGGCTCACATGATATTGTTGATGGAAACCATCACCTGACTCTTGGGCTAGTCTGGACTATTGTACTCCGATTCCAGgtataggtgatctttatttataatgcaacccaggggattactgtctaaca Alignment from CESAR CCAAAACCTACCAAGGGCCGAATGCGGATTCACTGCCTGGAGAATGTAGATAAAGCGCTGCAGTTCCTGAAGGAGCAGAAGGTGCACTTGGAAAACATGGGCTCCCATGACATTGTGGACGGAAACCACCGTCTGACCCTTGGGCTAGTGTGGACCATCATCCTCCGATTTCAG gtttttgtgtgtaactaaatactgttttattgctgtggtccctttcctagTCAAAGCCAACAAAAGGCCGGATGCAGATTCACTGCCTAGAAAATGTAGATAAAGCACTGCAGTTCCTGAAGGAACAGAAAGTGCACTTGCAGAACACAGGCTCACATGATATTGTTGATGGAAACCATCACCTGACTCTTGGGCTAGTCTGGACTATTGTACTCCGATTCCAGgtataggtgatctttatttataatgcaacccaggggattactgtctaaca Alignment from Spaln_aa2Genome CCAAAACCTACCAAGGGCCGAATGCGGATTCACTGCCTGGAGAATGTAGATAAAGCGCTGCAGTTCCTGAAGGAGCAGAAGGTGCACTTGGAAAACATGGGCTCCCATGACATTGTGGACGGAAACCACCGTCTGACCCTTGGGCTAGTGTGGACCATCATCCTCCGATTTCAG gtttttgtgtgtaactaaatactgttttattgctgtggtccctttcctagTCAAAGCCAACAAAAGGCCGGATGCAGATTCACTGCCTAGAAAATGTAGATAAAGCACTGCAGTTCCTGAAGGAACAGAAAGTGCACTTGCAGAACACAGGCTCACATGATATTGTTGATGGAAACCATCACCTGACTCTTGGGCTAGTCTGGACTATTGTACTCCGATTCCAGgtataggtgatctttatttataatgcaacccaggggattactgtctaaca Alignment from Spaln_nt2Genome CCAAAACCTACCAAGGGCCGAATGCGGATTCACTGCCTGGAGAATGTAGATAAAGCGCTGCAGTTCCTGAAGGAGCAGAAGGTGCACTTGGAAAACATGGGCTCCCATGACATTGTGGACGGAAACCACCGTCTGACCCTTGGGCTAGTGTGGACCATCATCCTCCGATTTCAG gtttttgtgtgtaactaaatactgttttattgctgtggtccctttcctagTCAAAGCCAACAAAAGGCCGGATGCAGATTCACTGCCTAGAAAATGTAGATAAAGCACTGCAGTTCCTGAAGGAACAGAAAGTGCACTTGCAGAACACAGGCTCACATGATATTGTTGATGGAAACCATCACCTGACTCTTGGGCTAGTCTGGACTATTGTACTCCGATTCCAGgtataggtgatctttatttataatgcaacccaggggattactgtctaaca Alignment from Pairagon CCAAAACCTACCAAGGGCCGAATGCGGATTCACTGCCTGGAGAATGTAGATAAAGCGCTGCAGTTCCTGAAGGAGCAGAAGGTGCACTTGGAAAACATGGGCTCCCATGACATTGTGGACGGAAACCACCGTCTGACCCTTGGGCTAGTGTGGACCATCATCCTCCGATTTCAG gtttttgtgtgtaactaaatactgttttattgctgtggtccctttcctagTCAAAGCCAACAAAAGGCCGGATGCAGATTCACTGCCTAGAAAATGTAGATAAAGCACTGCAGTTCCTGAAGGAACAGAAAGTGCACTTGCAGAACACAGGCTCACATGATATTGTTGATGGAAACCATCACCTGACTCTTGGGCTAGTCTGGACTATTGTACTCCGATTCCAGgtataggtgatctttatttataatgcaacccaggggattactgtctaaca Alignment from Exonerate_protein2genome gtttttgtgtgtaactaaatactgttttattgctgtggtccctttcctagtcaaagccaacaaaaggccggatgcagattcactgcctagaaaatgtagataaagcactgcagttcctgaaggaacagaaagtgcacttgcagaacacaggctcacatgatattgttgatggaaaccatcacctgactcttgggctagtctggactattgtactccgattccaggtataggtgatctttatttataatgcaacccaggggattactgtctaaca Alignment from Exonerate_coding2genome gtttttgtgtgtaactaaatactgttttattgctgtggtccctttcctagtcaaagccaacaaaaggccggatgcagattcactgcctagaaaatgtagataaagcactgcagttcctgaaggaacagaaagtgcacttgcagaacacaggctcacatgatattgttgatggaaaccatcacctgactcttgggctagtctggactattgtactccgattccaggtataggtgatctttatttataatgcaacccaggggattactgtctaaca Alignment from GeneWise CCAAAACCTACCAAGGGCCGAATGCGGATTCACTGCCTGGAGAATGTAGATAAAGCGCTGCAGTTCCTGAAGGAGCAGAAGGTGCACTTGGAAAACATGGGCTCCCATGACATTGTGGACGGAAACCACCGTCTGACCCTTGGGCTAGTGTGGACCATCATCCTCCGATTTCAG gtttttgtgtgtaactaaatactgttttattgctgtggtccctttcctagTCAAAGCCAACAAAAGGCCGGATGCAGATTCACTGCCTAGAAAATGTAGATAAAGCACTGCAGTTCCTGAAGGAACAGAAAGTGCACTTGCAGAACACAGGCTCACATGATATTGTTGATGGAAACCATCACCTGACTCTTGGGCTAGTCTGGACTATTGTACTCCGATTCCAGgtataggtgatctttatttataatgcaacccaggggattactgtctaaca #### Sptbn2_ID609_4 --> 0 - 2 Original Alignment ATCCAAGACATCAGTGTGGAGACAGAAGACAACAAGGAGAAGAAGTCAGCCAAGGATGCCCTGCTGCTGTGGTGCCAGATGAAGACTGCAgg aTACCCCAATGTCAA atggtacaaacactgtcagtgcttaagatttttttctctcctgagcacagATACAAGACATCAGTGTGGAAACAGAAGATAATAAGGAGAAGAAGTCAACTAAAGATGTCCTGCTGCTGTGGTGTCAGATGAAAACAGCTgggtaagagatgtgactccagcctcactttttccaaggTACCCCAATGTCAA Alignment from CESAR ATCCAAGACATCAGTGTGGAGACAGAAGACAACAAGGAGAAGAAGTCAGCCAAGGATGCCCTGCTGCTGTGGTGCCAGATGAAGACTGCAgg aTACCCCAATGTCAA atggtacaaacactgtcagtgcttaagatttttttctctcctgagcacagATACAAGACATCAGTGTGGAAACAGAAGATAATAAGGAGAAGAAGTCAACTAAAGATGTCCTGCTGCTGTGGTGTCAGATGAAAACAGCTgggtaagagatgtgaaggttgccccctttcccctcaggTACCCCAATGTCAA Alignment from Spaln_aa2Genome ATCCAAGACATCAGTGTGGAGACAGAAGACAACAAGGAGAAGAAGTCAGCCAAGGATGCCCTGCTGCTGTGGTGCCAGATGAAGACTGCAGG ATACCCCAATGTCAA atggtacaaacactgtcagtgcttaagatttttttctctcctgagcacagATACAAGACATCAGTGTGGAAACAGAAGATAATAAGGAGAAGAAGTCAACTAAAGATGTCCTGCTGCTGTGGTGTCAGATGAAAACAGCTGGgtaagagatgtgactccagcctcactttttccaagGTACCCCAATGTCAA Alignment from Spaln_nt2Genome ATCCAAGACATCAGTGTGGAGACAGAAGACAACAAGGAGAAGAAGTCAGCCAAGGATGCCCTGCTGCTGTGGTGCCAGATGAAGACTGCAGG ATACCCCAATGTCAA atggtacaaacactgtcagtgcttaagatttttttctctcctgagcacagATACAAGACATCAGTGTGGAAACAGAAGATAATAAGGAGAAGAAGTCAACTAAAGATGTCCTGCTGCTGTGGTGTCAGATGAAAACAGCTGGgtaagagatgtgactccagcctcactttttccaagGTACCCCAATGTCAA Alignment from Pairagon ATCCAAGACATCAGTGTGGAGACAGAAGACAACAAGGAGAAGAAGTCAGCCAAGGATGCCCTGCTGCTGTGGTGCCAGATGAAGACTGCAGG ATACCCCAATGTCAA atggtacaaacactgtcagtgcttaagatttttttctctcctgagcacagATACAAGACATCAGTGTGGAAACAGAAGATAATAAGGAGAAGAAGTCAACTAAAGATGTCCTGCTGCTGTGGTGTCAGATGAAAACAGCTGGgtaagagatgtgactccagcctcactttttccaagGTACCCCAATGTCAA Alignment from Exonerate_protein2genome atggtacaaacactgtcagtgcttaagatttttttctctcctgagcacagatacaagacatcagtgtggaaacagaagataataaggagaagaagtcaactaaagatgtcctgctgctgtggtgtcagatgaaaacagctgggtaagagatgtgactccagcctcactttttccaaggtaccccaatgtcaa Alignment from Exonerate_coding2genome atggtacaaacactgtcagtgcttaagatttttttctctcctgagcacagatacaagacatcagtgtggaaacagaagataataaggagaagaagtcaactaaagatgtcctgctgctgtggtgtcagatgaaaacagctgggtaagagatgtgactccagcctcactttttccaaggtaccccaatgtcaa Alignment from GeneWise ATCCAAGACATCAGTGTGGAGACAGAAGACAACAAGGAGAAGAAGTCAGCCAAGGATGCCCTGCTGCTGTGGTGCCAGATGAAGACTGCAGG ATACCCCAATGTCAA atggtacaaacactgtcagtgcttaagatttttttctctcctgagcacagATACAAGACATCAGTGTGGAAACAGAAGATAATAAGGAGAAGAAGTCAACTAAAGATGTCCTGCTGCTGTGGTGTCAGATGAAAACAGCTGGgtaagagatgtgactccagcctcactttttccaagGTACCCCAATGTCAA #### Sptbn2_ID614_9 --> 1 - 0 Original Alignment gTTCACGGAGAAAGGGAACTTGGAGGTGTTGCTCTTCACCATCCAGAGCAAGCTACGGGCCAACAACCAGAAGGTCTACACACCCCGGGAAGGCCGGCTCATCTCGGACATCAACAAG gatacacttagcaaaggtgagctgatcttttttttgttttctgtttctaggTTCACAGAGAAAGGGAATTTGGAGGTGTTGCTCTTCACAATACAGAGTAAGCTCCAGGCCAACAATCAGAAGGTTTACACACCCCGAGAAGGCCGTCACATTTCAGACATCAACAAGgtaaccattgttctgttgatctgtccaccccacaggccacgttaccattg Alignment from CESAR gTTCACGGAGAAAGGGAACTTGGAGGTGTTGCTCTTCACCATCCAGAGCAAGCTACGGGCCAACAACCAGAAGGTCTACACACCCCGGGAAGGCCGGCTCATCTCGGACATCAACAAG gatacacttagcaaaggtgagctgatcttttttttgttttctgtttctaggTTCACAGAGAAAGGGAATTTGGAGGTGTTGCTCTTCACAATACAGAGTAAGCTCCAGGCCAACAATCAGAAGGTTTACACACCCCGAGAAGGCCGTCACATTTCAGACATCAACAAGgtaaccattgttctgttgatctgtccaccccacaggccacgttaccattg Alignment from Spaln_aa2Genome GTTCACGGAGAAAGGGAACTTGGAGGTGTTGCTCTTCACCATCCAGAGCAAGCTACGGGCCAACAACCAGAAGGTCTACACACCCCGGGAAGGCCGGCTCATCTCGGACATCAACAAG gatacacttagcaaaggtgagctgatcttttttttgttttctgtttctagGTTCACAGAGAAAGGGAATTTGGAGGTGTTGCTCTTCACAATACAGAGTAAGCTCCAGGCCAACAATCAGAAGGTTTACACACCCCGAGAAGGCCGTCACATTTCAGACATCAACAAGgtaaccattgttctgttgatctgtccaccccacaggccacgttaccattg Alignment from Spaln_nt2Genome GTTCACGGAGAAAGGGAACTTGGAGGTGTTGCTCTTCACCATCCAGAGCAAGCTACGGGCCAACAACCAGAAGGTCTACACACCCCGGGAAGGCCGGCTCATCTCGGACATCAACAAG gatacacttagcaaaggtgagctgatcttttttttgttttctgtttctagGTTCACAGAGAAAGGGAATTTGGAGGTGTTGCTCTTCACAATACAGAGTAAGCTCCAGGCCAACAATCAGAAGGTTTACACACCCCGAGAAGGCCGTCACATTTCAGACATCAACAAGgtaaccattgttctgttgatctgtccaccccacaggccacgttaccattg Alignment from Pairagon GTTCACGGAGAAAGGGAACTTGGAGGTGTTGCTCTTCACCATCCAGAGCAAGCTACGGGCCAACAACCAGAAGGTCTACACACCCCGGGAAGGCCGGCTCATCTCGGACATCAACAAG gatacacttagcaaaggtgagctgatcttttttttgttttctgtttctagGTTCACAGAGAAAGGGAATTTGGAGGTGTTGCTCTTCACAATACAGAGTAAGCTCCAGGCCAACAATCAGAAGGTTTACACACCCCGAGAAGGCCGTCACATTTCAGACATCAACAAGgtaaccattgttctgttgatctgtccaccccacaggccacgttaccattg Alignment from Exonerate_protein2genome gatacacttagcaaaggtgagctgatcttttttttgttttctgtttctaggttcacagagaaagggaatttggaggtgttgctcttcacaatacagagtaagctccaggccaacaatcagaaggtttacacaccccgagaaggccgtcacatttcagacatcaacaaggtaaccattgttctgttgatctgtccaccccacaggccacgttaccattg Alignment from Exonerate_coding2genome gatacacttagcaaaggtgagctgatcttttttttgttttctgtttctaggttcacagagaaagggaatttggaggtgttgctcttcacaatacagagtaagctccaggccaacaatcagaaggtttacacaccccgagaaggccgtcacatttcagacatcaacaaggtaaccattgttctgttgatctgtccaccccacaggccacgttaccattg Alignment from GeneWise GTTCACGGAGAAAGGGAACTTGGAGGTGTTGCTCTTCACCATCCAGAGCAAGCTACGGGCCAACAACCAGAAGGTCTACACACCCCGGGAAGGCCGGCTCATCTCGGACATCAACAAG gatacacttagcaaaggtgagctgatcttttttttgttttctgtttctagGTTCACAGAGAAAGGGAATTTGGAGGTGTTGCTCTTCACAATACAGAGTAAGCTCCAGGCCAACAATCAGAAGGTTTACACACCCCGAGAAGGCCGTCACATTTCAGACATCAACAAGgtaaccattgttctgttgatctgtccaccccacaggccacgttaccattg #### Sptbn2_ID615_10 --> 0 - 0 Original Alignment GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacccattctgccactacccccactttccttgtgccttgttcctgcagGCCTGGGAGCGATTGGAGAAATCCGAACATGAGAGAGAGCTAGCATTGCGCACAGAGCTCATTCGTCAGAAAAAGCTAGAGAAATTAGCTGCTCGATTTGACCACAAGGCTTCTATGCGGAAGACTTGGCTCAGAGAGAATCAGCGTCTTGTTTCTCAAgtgaggtttctccaccagcctaaaaggtgtatattaatgagatctgtgca Alignment from CESAR GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacccattctgccactacccccactttccttgtgccttgttcctgcagGCCTGGGAGCGATTGGAGAAATCCGAACATGAGAGAGAGCTAGCATTGCGCACAGAGCTCATTCGTCAGAAAAAGCTAGAGAAATTAGCTGCTCGATTTGACCACAAGGCTTCTATGCGGAAGACTTGGCTCAGAGAGAATCAGCGTCTTGTTTCTCAAgtgaggtttctccaccagcctaaaaggtgtatattaatgagatctgtgca Alignment from Spaln_aa2Genome GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacccattctgccactacccccactttccttgtgccttgttcctgcagGCCTGGGAGCGATTGGAGAAATCCGAACATGAGAGAGAGCTAGCATTGCGCACAGAGCTCATTCGTCAGAAAAAGCTAGAGAAATTAGCTGCTCGATTTGACCACAAGGCTTCTATGCGGAAGACTTGGCTCAGAGAGAATCAGCGTCTTGTTTCTCAAgtgaggtttctccaccagcctaaaaggtgtatattaatgagatctgtgca Alignment from Spaln_nt2Genome GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacccattctgccactacccccactttccttgtgccttgttcctgcagGCCTGGGAGCGATTGGAGAAATCCGAACATGAGAGAGAGCTAGCATTGCGCACAGAGCTCATTCGTCAGAAAAAGCTAGAGAAATTAGCTGCTCGATTTGACCACAAGGCTTCTATGCGGAAGACTTGGCTCAGAGAGAATCAGCGTCTTGTTTCTCAAgtgaggtttctccaccagcctaaaaggtgtatattaatgagatctgtgca Alignment from Pairagon GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacccattctgccactacccccactttccttgtgccttgttcctgcagGCCTGGGAGCGATTGGAGAAATCCGAACATGAGAGAGAGCTAGCATTGCGCACAGAGCTCATTCGTCAGAAAAAGCTAGAGAAATTAGCTGCTCGATTTGACCACAAGGCTTCTATGCGGAAGACTTGGCTCAGAGAGAATCAGCGTCTTGTTTCTCAAgtgaggtttctccaccagcctaaaaggtgtatattaatgagatctgtgca Alignment from Exonerate_protein2genome ctaacccattctgccactacccccactttccttgtgccttgttcctgcaggcctgggagcgattggagaaatccgaacatgagagagagctagcattgcgcacagagctcattcgtcagaaaaagctagagaaattagctgctcgatttgaccacaaggcttctatgcggaagacttggctcagagagaatcagcgtcttgtttctcaagtgaggtttctccaccagcctaaaaggtgtatattaatgagatctgtgca Alignment from Exonerate_coding2genome ctaacccattctgccactacccccactttccttgtgccttgttcctgcaggcctgggagcgattggagaaatccgaacatgagagagagctagcattgcgcacagagctcattcgtcagaaaaagctagagaaattagctgctcgatttgaccacaaggcttctatgcggaagacttggctcagagagaatcagcgtcttgtttctcaagtgaggtttctccaccagcctaaaaggtgtatattaatgagatctgtgca Alignment from GeneWise GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacccattctgccactacccccactttccttgtgccttgttcctgcagGCCTGGGAGCGATTGGAGAAATCCGAACATGAGAGAGAGCTAGCATTGCGCACAGAGCTCATTCGTCAGAAAAAGCTAGAGAAATTAGCTGCTCGATTTGACCACAAGGCTTCTATGCGGAAGACTTGGCTCAGAGAGAATCAGCGTCTTGTTTCTCAAgtgaggtttctccaccagcctaaaaggtgtatattaatgagatctgtgca #### Sptbn2_ID616_11 --> 0 - 0 Original Alignment GACAACTTTGGGCTGGAACTGGCAGCAGTGGAGGCTGCAGTGAGAAAGCATGAAGCCATTGAGACAGACATTGTCGCCTACAGTGGCCGGGTGCAGGCGGTGGATGCTGTAGCTGCAGAACTGGCTGCTGAGCACTACCATGACATTAAGCGCATTGCGGCACGTCAGAACAACGTGGCCCGGCTCTGGGACTTCTTACGGCAAATGGTGGCTGCCCGCCGTGAGAGACTTCTTCTCAACCTGGAGCTGCAGAAAGTGTTTCAGGACCTGCTCTACCTCATGGACTGGATGGCAGAGATGAAG aggtcctattttctggtatcatcctgtcattagtgctgtttggtgtccagGACAACTTTGGGTTCGAACTTGCAGCAGTAGAGGCGGCGGTTAGAAAGCACGAAGCCATTGAGACAGACATTGTAGCCTATAGTGGCCGAGTGCAGGCAGTGGATGCTGTAGCTGCAGAACTGGCTGCCGAGCACTATCATGACATTAAGGACATCGCAGCCCGTCAGAACAATGTGGCCCGGCTCTGGGACTTCCTACGACAAATGGTTGCTGCCAGCTGTGAGAGGCTTCTCCTCAACCTCGAATTACAGAAAGTGTTTCAGGACCTATTCTACCTCATGGACTGGATGGCAGAGATGAAGgtaagagtggcatgctattcatacacccatcctgcagagtgatattctgg Alignment from CESAR GACAACTTTGGGCTGGAACTGGCAGCAGTGGAGGCTGCAGTGAGAAAGCATGAAGCCATTGAGACAGACATTGTCGCCTACAGTGGCCGGGTGCAGGCGGTGGATGCTGTAGCTGCAGAACTGGCTGCTGAGCACTACCATGACATTAAGCGCATTGCGGCACGTCAGAACAACGTGGCCCGGCTCTGGGACTTCTTACGGCAAATGGTGGCTGCCCGCCGTGAGAGACTTCTTCTCAACCTGGAGCTGCAGAAAGTGTTTCAGGACCTGCTCTACCTCATGGACTGGATGGCAGAGATGAAG aggtcctattttctggtatcatcctgtcattagtgctgtttggtgtccagGACAACTTTGGGTTCGAACTTGCAGCAGTAGAGGCGGCGGTTAGAAAGCACGAAGCCATTGAGACAGACATTGTAGCCTATAGTGGCCGAGTGCAGGCAGTGGATGCTGTAGCTGCAGAACTGGCTGCCGAGCACTATCATGACATTAAGGACATCGCAGCCCGTCAGAACAATGTGGCCCGGCTCTGGGACTTCCTACGACAAATGGTTGCTGCCAGCTGTGAGAGGCTTCTCCTCAACCTCGAATTACAGAAAGTGTTTCAGGACCTATTCTACCTCATGGACTGGATGGCAGAGATGAAGgtaagagtggcatgctattcatacacccatcctgcagagtgatattctgg Alignment from Spaln_aa2Genome GACAACTTTGGGCTGGAACTGGCAGCAGTGGAGGCTGCAGTGAGAAAGCATGAAGCCATTGAGACAGACATTGTCGCCTACAGTGGCCGGGTGCAGGCGGTGGATGCTGTAGCTGCAGAACTGGCTGCTGAGCACTACCATGACATTAAGCGCATTGCGGCACGTCAGAACAACGTGGCCCGGCTCTGGGACTTCTTACGGCAAATGGTGGCTGCCCGCCGTGAGAGACTTCTTCTCAACCTGGAGCTGCAGAAAGTGTTTCAGGACCTGCTCTACCTCATGGACTGGATGGCAGAGATGAAG aggtcctattttctggtatcatcctgtcattagtgctgtttggtgtccagGACAACTTTGGGTTCGAACTTGCAGCAGTAGAGGCGGCGGTTAGAAAGCACGAAGCCATTGAGACAGACATTGTAGCCTATAGTGGCCGAGTGCAGGCAGTGGATGCTGTAGCTGCAGAACTGGCTGCCGAGCACTATCATGACATTAAGGACATCGCAGCCCGTCAGAACAATGTGGCCCGGCTCTGGGACTTCCTACGACAAATGGTTGCTGCCAGCTGTGAGAGGCTTCTCCTCAACCTCGAATTACAGAAAGTGTTTCAGGACCTATTCTACCTCATGGACTGGATGGCAGAGATGAAGgtaagagtggcatgctattcatacacccatcctgcagagtgatattctgg Alignment from Spaln_nt2Genome GACAACTTTGGGCTGGAACTGGCAGCAGTGGAGGCTGCAGTGAGAAAGCATGAAGCCATTGAGACAGACATTGTCGCCTACAGTGGCCGGGTGCAGGCGGTGGATGCTGTAGCTGCAGAACTGGCTGCTGAGCACTACCATGACATTAAGCGCATTGCGGCACGTCAGAACAACGTGGCCCGGCTCTGGGACTTCTTACGGCAAATGGTGGCTGCCCGCCGTGAGAGACTTCTTCTCAACCTGGAGCTGCAGAAAGTGTTTCAGGACCTGCTCTACCTCATGGACTGGATGGCAGAGATGAAG aggtcctattttctggtatcatcctgtcattagtgctgtttggtgtccagGACAACTTTGGGTTCGAACTTGCAGCAGTAGAGGCGGCGGTTAGAAAGCACGAAGCCATTGAGACAGACATTGTAGCCTATAGTGGCCGAGTGCAGGCAGTGGATGCTGTAGCTGCAGAACTGGCTGCCGAGCACTATCATGACATTAAGGACATCGCAGCCCGTCAGAACAATGTGGCCCGGCTCTGGGACTTCCTACGACAAATGGTTGCTGCCAGCTGTGAGAGGCTTCTCCTCAACCTCGAATTACAGAAAGTGTTTCAGGACCTATTCTACCTCATGGACTGGATGGCAGAGATGAAGgtaagagtggcatgctattcatacacccatcctgcagagtgatattctgg Alignment from Pairagon GACAACTTTGGGCTGGAACTGGCAGCAGTGGAGGCTGCAGTGAGAAAGCATGAAGCCATTGAGACAGACATTGTCGCCTACAGTGGCCGGGTGCAGGCGGTGGATGCTGTAGCTGCAGAACTGGCTGCTGAGCACTACCATGACATTAAGCGCATTGCGGCACGTCAGAACAACGTGGCCCGGCTCTGGGACTTCTTACGGCAAATGGTGGCTGCCCGCCGTGAGAGACTTCTTCTCAACCTGGAGCTGCAGAAAGTGTTTCAGGACCTGCTCTACCTCATGGACTGGATGGCAGAGATGAAG aggtcctattttctggtatcatcctgtcattagtgctgtttggtgtccagGACAACTTTGGGTTCGAACTTGCAGCAGTAGAGGCGGCGGTTAGAAAGCACGAAGCCATTGAGACAGACATTGTAGCCTATAGTGGCCGAGTGCAGGCAGTGGATGCTGTAGCTGCAGAACTGGCTGCCGAGCACTATCATGACATTAAGGACATCGCAGCCCGTCAGAACAATGTGGCCCGGCTCTGGGACTTCCTACGACAAATGGTTGCTGCCAGCTGTGAGAGGCTTCTCCTCAACCTCGAATTACAGAAAGTGTTTCAGGACCTATTCTACCTCATGGACTGGATGGCAGAGATGAAGgtaagagtggcatgctattcatacacccatcctgcagagtgatattctgg Alignment from Exonerate_protein2genome aggtcctattttctggtatcatcctgtcattagtgctgtttggtgtccaggacaactttgggttcgaacttgcagcagtagaggcggcggttagaaagcacgaagccattgagacagacattgtagcctatagtggccgagtgcaggcagtggatgctgtagctgcagaactggctgccgagcactatcatgacattaaggacatcgcagcccgtcagaacaatgtggcccggctctgggacttcctacgacaaatggttgctgccagctgtgagaggcttctcctcaacctcgaattacagaaagtgtttcaggacctattctacctcatggactggatggcagagatgaaggtaagagtggcatgctattcatacacccatcctgcagagtgatattctgg Alignment from Exonerate_coding2genome aggtcctattttctggtatcatcctgtcattagtgctgtttggtgtccaggacaactttgggttcgaacttgcagcagtagaggcggcggttagaaagcacgaagccattgagacagacattgtagcctatagtggccgagtgcaggcagtggatgctgtagctgcagaactggctgccgagcactatcatgacattaaggacatcgcagcccgtcagaacaatgtggcccggctctgggacttcctacgacaaatggttgctgccagctgtgagaggcttctcctcaacctcgaattacagaaagtgtttcaggacctattctacctcatggactggatggcagagatgaaggtaagagtggcatgctattcatacacccatcctgcagagtgatattctgg Alignment from GeneWise GACAACTTTGGGCTGGAACTGGCAGCAGTGGAGGCTGCAGTGAGAAAGCATGAAGCCATTGAGACAGACATTGTCGCCTACAGTGGCCGGGTGCAGGCGGTGGATGCTGTAGCTGCAGAACTGGCTGCTGAGCACTACCATGACATTAAGCGCATTGCGGCACGTCAGAACAACGTGGCCCGGCTCTGGGACTTCTTACGGCAAATGGTGGCTGCCCGCCGTGAGAGACTTCTTCTCAACCTGGAGCTGCAGAAAGTGTTTCAGGACCTGCTCTACCTCATGGACTGGATGGCAGAGATGAAG aggtcctattttctggtatcatcctgtcattagtgctgtttggtgtccagGACAACTTTGGGTTCGAACTTGCAGCAGTAGAGGCGGCGGTTAGAAAGCACGAAGCCATTGAGACAGACATTGTAGCCTATAGTGGCCGAGTGCAGGCAGTGGATGCTGTAGCTGCAGAACTGGCTGCCGAGCACTATCATGACATTAAGGACATCGCAGCCCGTCAGAACAATGTGGCCCGGCTCTGGGACTTCCTACGACAAATGGTTGCTGCCAGCTGTGAGAGGCTTCTCCTCAACCTCGAATTACAGAAAGTGTTTCAGGACCTATTCTACCTCATGGACTGGATGGCAGAGATGAAGgtaagagtggcatgctattcatacacccatcctgcagagtgatattctgg #### Sptbn2_ID619_14 --> 1 - 2 Original Alignment gTTTGAGACCCTGGAGCCTGAAATGAACGCCCTGGCTGCA------CGGGTTACT---GCTGTCAATGACATCGCTGAGCAGCTGCTGAAGGCCAGTCCACCAGGCAAGGACCGC------ATCATTGGCACCCAGGAGCAGCTCAACCAAag tccagccagactctagtcagcttgacaagtaatgatttttctcttaacagaTTTGAGACCCTAAAGCCTGACATC---ACTCTGGCAGCAGTTGCATGGGTTACTACAGCTGTAAATGATATTGCTGAGCAGTTGTTTAAGGCCAGCCCTCCAGGCAAGGACTGGGACTGGACAATCAGAGCCCAGGAGCAACTCAATCAAaggtgagctactgcttgtcaccgatcaaggaatatgcaatgccactccattt Alignment from CESAR gTTTGAGACCCTGGAGCCTGAAATGAAC---GCCCTGGCTGCACGGGTTACT---GCTGTCAATGACATCGCTGAGCAGCTGCTGAAGGCCAGTCCACCAGGCAAGGAC------CGCATCATTGGCACCCAGGAGCAGCTCAACCAAag tccagccagactctagtcagcttgacaagtaatgatttttctcttaacagaTTTGAGACCCTAAAGCCTGACATCACTCTGGCAGCAGTTGCATGGGTTACTACAGCTGTAAATGATATTGCTGAGCAGTTGTTTAAGGCCAGCCCTCCAGGCAAGGACTGGGACTGGACAATCAGAGCCCAGGAGCAACTCAATCAAaggtgagctactgcttgtcaccgatcaaggaatatgcaatgccactccattt Alignment from Spaln_aa2Genome GTTTGAGACCCTGGAGCCTGAAATGAAC------GCCCTGGCTGCACGGGTTACTGCTGTCAATGACATCGCTGAGCAGCTGCTGAAGGCCAGTCCACCAGGCAAG------GACCGCATCATTGGCACCCAGGAGCAGCTCAACCAAAG tccagccagactctagtcagcttgacaagtaatgatttttctcttaacagATTTGAGACCCTAAAGCCTGACATCACTCTGGCAGCAGTTGCATGGGTTACTACAGCTGTAAATGATATTGCTGAGCAGTTGTTTAAGGCCAGCCCTCCAGGCAAGGACTGGGACTGGACAATCAGAGCCCAGGAGCAACTCAATCAAAGgtgagctactgcttgtcaccgatcaaggaatatgcaatgccactccattt Alignment from Spaln_nt2Genome GTTTGAGACCCTGGAGCCTGAAATGAACGCCCTGGC------TGCACGGGTTACT---GCTGTCAATGACATCGCTGAGCAGCTGCTGAAGGCCAGTCCACCAGGCAAGGACCGCATC------ATTGGCACCCAGGAGCAGCTCAACCAAAG tccagccagactctagtcagcttgacaagtaatgatttttctcttaacagATTTGAGACCCTAAAGCCTGACAT---CACTCTGGCAGCAGTTGCATGGGTTACTACAGCTGTAAATGATATTGCTGAGCAGTTGTTTAAGGCCAGCCCTCCAGGCAAGGACTGGGACTGGACAATCAGAGCCCAGGAGCAACTCAATCAAAGgtgagctactgcttgtcaccgatcaaggaatatgcaatgccactccattt Alignment from Pairagon GTTTGAGACCCTGGAGCCTGAAATGAACGCCCTGGC------TGCACGGGTTACT---GCTGTCAATGACATCGCTGAGCAGCTGCTGAAGGCCAGTCCACCAGGCAAGGACCGCATCATTGGCA--------------CCCAGGAGCAGCTCAACCAAAG tccagccagactctagtcagcttgacaagtaatgatttttctcttaacagATTTGAGACCCTAAAGCCTGACAT---CACTCTGGCAGCAGTTGCATGGGTTACTACAGCTGTAAATGATATTGCTGAGCAGTTGTTTAAGGCCAGCCCTCCAGGCAAGGAC--------TGGGACTGGACAATCAGAGCCCAGGAGCAACTCAATCAAAGgtgagctactgcttgtcaccgatcaaggaatatgcaatgccactccattt Alignment from Exonerate_protein2genome GTTTGAGACCCTGGAGCCTGAAATGAAC------GCCCTGGCTGCACGGGTTACTGCTGTCAATGACATCGCTGAGCAGCTGCTGAAGGCCAGTCCACCAGGCAAG------GACCGCATCATTGGCACCCAGGAGCAGCTCAACCAAAG tccagccagactctagtcagcttgacaagtaatgatttttctcttaacagATTTGAGACCCTAAAGCCTGACATCACTCTGGCAGCAGTTGCATGGGTTACTACAGCTGTAAATGATATTGCTGAGCAGTTGTTTAAGGCCAGCCCTCCAGGCAAGGACTGGGACTGGACAATCAGAGCCCAGGAGCAACTCAATCAAAGgtgagctactgcttgtcaccgatcaaggaatatgcaatgccactccattt Alignment from Exonerate_coding2genome GTTTGAGACCCTGGAGCCTGAAATGAAC------GCCCTGGCTGCACGGGTTACTGCTGTCAATGACATCGCTGAGCAGCTGCTGAAGGCCAGTCCACCAGGCAAG------GACCGCATCATTGGCACCCAGGAGCAGCTCAACCAAAG tccagccagactctagtcagcttgacaagtaatgatttttctcttaacagATTTGAGACCCTAAAGCCTGACATCACTCTGGCAGCAGTTGCATGGGTTACTACAGCTGTAAATGATATTGCTGAGCAGTTGTTTAAGGCCAGCCCTCCAGGCAAGGACTGGGACTGGACAATCAGAGCCCAGGAGCAACTCAATCAAAGgtgagctactgcttgtcaccgatcaaggaatatgcaatgccactccattt Alignment from GeneWise GTTTGAGACCCTGGAGCCTGAAATGAAC------GCCCTGGCTGCACGGGTTACTGCTGTCAATGACATCGCTGAGCAGCTGCTGAAGGCCAGTCCACCAGGCAAGGAC------CGCATCATTGGCACCCAGGAGCAGCTCAACCAAAG tccagccagactctagtcagcttgacaagtaatgatttttctcttaacagATTTGAGACCCTAAAGCCTGACATCACTCTGGCAGCAGTTGCATGGGTTACTACAGCTGTAAATGATATTGCTGAGCAGTTGTTTAAGGCCAGCCCTCCAGGCAAGGACTGGGACTGGACAATCAGAGCCCAGGAGCAACTCAATCAAAGgtgagctactgcttgtcaccgatcaaggaatatgcaatgccactccattt #### Sptbn2_ID620_15 --> 1 - 0 Original Alignment gTGGCAGCAGTTTCGGTCCCTGGCAGATGGCAAAAAGGCGGCTCTGACATCAGCCCTG---AGCATCCAGAATTACCACCTAGAGTGCACAGAGACCCAGGCCTGGATGAGAGAGAAGACTAAGGTCATTGAGTCCACCCAGGGCCTGGGCAATGATCTAGCTGGTGTGCTGGCCCTGCAGCGGAAGTTGGCGGGTACTGAGAGAGATCTGGAAGCTATCTCTGCCCGGGTGGGTGAGCTGACCCAAGAGGCAAATGCCTTGGCTGCTGGGCACCCAGCTCAAGCTCCTGCCATCAACACCCGGCTTGGAGAGGTACAAGCAGGATGGGAAGATCTTCGGGCGACC---ATGAGGCGGAGAGAAGAGTCCCTGGGTGAGGCTCGGCGGCTGCAGGATTTCCTGCGCAGCTTGGATGACTTCCAGGCCTGGCTAGGCCGCACACAGACCGCTGTAGCCTCCGAAGAAGGGCCAGCCACCCTTCCCGAGGCAGAAGCCCTCTTAGCCCAGCACGCAGCTCTGCGGGGAGAAGTGGAGAGAGCCCAGAGCGAGTACAGCCGCCTCAGGACCTTGGGCGAGGAGGTGACCAGAGACCAGGCTGATCCCCAGTGC---CTCTTCCTCAGACAGAGGCTGGAAGCCCTTGGAACCGGCTGGGAGGAGCTGGGTCGCATGTGGGAGAGCCGGCAAGGCCGCCTGGCCCAGGCCCATGGCTTCCAGGGGTTTTTAAGAGATGCTCGCCAGGCTGAGGGTGTTCTCAGCAGCCAG tatatctcgatctgttcactaaagaattcaggcctgcttggcatctgtaggTGGCAAGAATTTCGGTCCTTGTCAGATGGAAAAAAGGCAACTCTGACATCTGCCTTTTTGACTATCCAGAATTATCACTTGGAATGCACAGCAATGCAAGCTTGGATGAGAAAGGAGACCAAGGTAATCCAATCCACCCAGAGCCTTGGGAATGGGCTAGCTGGGGTGCTAGCCTTGCAGCGAAAGCTAGCTGGTACTGCAAGAGATCTGGAAGCAATCTCTGCCCGTGTGGGTGAGCTGACTCAAGAAGCAATTGCCTTGGCTTCTGGGTACCCTGCCCAACCTCCTGCTATCAACACACGGCTTGGGGAAGCACAAGCAGGGTGGGAGGATATCCAGGCTTCAACCATGAGACAAAGAGAAGAGTCCTTAGGTGAGACCCAACACCTCCAGGATTTCTTTCGTAGCCTAGATGACTTCCAGGCATGGTTAGGCTGTGCACAAACTACC---GCCACAGAAGAAGGGCCAGCTACTCTTTCTGAGGTGGAAGCCCTCATAGCTCAACATGCTGCTCTACGGGAGGAAGTTGAGAGAGCCCAGAGTGAATACAGCCGCCTCCAAGCCTTGGGTGAAGAGGTAACCCGAGACCAAGCAGATGCACAATGCCGCCTGTTCCTAAGGCAAAGACTAGAAGCTCTTGGGACCAGTTGGAAGCACTTGGGGCGCATGTGGGAGAGTAGGCAGGGCCACCTTGCTCAAGCCCATGGATTCCAGGGGTTTTTGAGAGATGCTCACCAGGCAGAAGGGGTTCTCAGCAGTCAGgtgagcactcagagcaaagccccagtcaagaaaaagaatgtagcgctggg Alignment from CESAR gTGGCAGCAGTTTCGGTCCCTGGCAGATGGCAAAAAGGCGGCTCTGACATCAGCC---CTGAGCATCCAGAATTACCACCTAGAGTGCACAGAGACCCAGGCCTGGATGAGAGAGAAGACTAAGGTCATTGAGTCCACCCAGGGCCTGGGCAATGATCTAGCTGGTGTGCTGGCCCTGCAGCGGAAGTTGGCGGGTACTGAGAGAGATCTGGAAGCTATCTCTGCCCGGGTGGGTGAGCTGACCCAAGAGGCAAATGCCTTGGCTGCTGGGCACCCAGCTCAAGCTCCTGCCATCAACACCCGGCTTGGAGAGGTACAAGCAGGATGGGAAGATCTTCGGGCG---ACCATGAGGCGGAGAGAAGAGTCCCTGGGTGAGGCTCGGCGGCTGCAGGATTTCCTGCGCAGCTTGGATGACTTCCAGGCCTGGCTAGGCCGCACACAGACCGCTGTAGCCTCCGAAGAAGGGCCAGCCACCCTTCCCGAGGCAGAAGCCCTCTTAGCCCAGCACGCAGCTCTGCGGGGAGAAGTGGAGAGAGCCCAGAGCGAGTACAGCCGCCTCAGGACCTTGGGCGAGGAGGTGACCAGAGACCAGGCTGATCCCCAGTGC---CTCTTCCTCAGACAGAGGCTGGAAGCCCTTGGAACCGGCTGGGAGGAGCTGGGTCGCATGTGGGAGAGCCGGCAAGGCCGCCTGGCCCAGGCCCATGGCTTCCAGGGGTTTTTAAGAGATGCTCGCCAGGCTGAGGGTGTTCTCAGCAGCCAG tatatctcgatctgttcactaaagaattcaggcctgcttggcatctgtaggTGGCAAGAATTTCGGTCCTTGTCAGATGGAAAAAAGGCAACTCTGACATCTGCCTTTTTGACTATCCAGAATTATCACTTGGAATGCACAGCAATGCAAGCTTGGATGAGAAAGGAGACCAAGGTAATCCAATCCACCCAGAGCCTTGGGAATGGGCTAGCTGGGGTGCTAGCCTTGCAGCGAAAGCTAGCTGGTACTGCAAGAGATCTGGAAGCAATCTCTGCCCGTGTGGGTGAGCTGACTCAAGAAGCAATTGCCTTGGCTTCTGGGTACCCTGCCCAACCTCCTGCTATCAACACACGGCTTGGGGAAGCACAAGCAGGGTGGGAGGATATCCAGGCTTCAACCATGAGACAAAGAGAAGAGTCCTTAGGTGAGACCCAACACCTCCAGGATTTCTTTCGTAGCCTAGATGACTTCCAGGCATGGTTAGGCTGTGCACAAACTACC---GCCACAGAAGAAGGGCCAGCTACTCTTTCTGAGGTGGAAGCCCTCATAGCTCAACATGCTGCTCTACGGGAGGAAGTTGAGAGAGCCCAGAGTGAATACAGCCGCCTCCAAGCCTTGGGTGAAGAGGTAACCCGAGACCAAGCAGATGCACAATGCCGCCTGTTCCTAAGGCAAAGACTAGAAGCTCTTGGGACCAGTTGGAAGCACTTGGGGCGCATGTGGGAGAGTAGGCAGGGCCACCTTGCTCAAGCCCATGGATTCCAGGGGTTTTTGAGAGATGCTCACCAGGCAGAAGGGGTTCTCAGCAGTCAGgtgagcactcagagcaaagccccagtcaagaaaaagaatgtagcgctggg Alignment from Spaln_aa2Genome GTGGCAGCAGTTTCGGTCCCTGGCAGATGGCAAAAAGGCGGCTCTGACATCAGCC---CTGAGCATCCAGAATTACCACCTAGAGTGCACAGAGACCCAGGCCTGGATGAGAGAGAAGACTAAGGTCATTGAGTCCACCCAGGGCCTGGGCAATGATCTAGCTGGTGTGCTGGCCCTGCAGCGGAAGTTGGCGGGTACTGAGAGAGATCTGGAAGCTATCTCTGCCCGGGTGGGTGAGCTGACCCAAGAGGCAAATGCCTTGGCTGCTGGGCACCCAGCTCAAGCTCCTGCCATCAACACCCGGCTTGGAGAGGTACAAGCAGGATGGGAAGATCTTCGGGCG---ACCATGAGGCGGAGAGAAGAGTCCCTGGGTGAGGCTCGGCGGCTGCAGGATTTCCTGCGCAGCTTGGATGACTTCCAGGCCTGGCTAGGCCGCACACAGACCGCTGTAGCCTCCGAAGAAGGGCCAGCCACCCTTCCCGAGGCAGAAGCCCTCTTAGCCCAGCACGCAGCTCTGCGGGGAGAAGTGGAGAGAGCCCAGAGCGAGTACAGCCGCCTCAGGACCTTGGGCGAGGAGGTGACCAGAGACCAGGCTGATCCCCAGTGC---CTCTTCCTCAGACAGAGGCTGGAAGCCCTTGGAACCGGCTGGGAGGAGCTGGGTCGCATGTGGGAGAGCCGGCAAGGCCGCCTGGCCCAGGCCCATGGCTTCCAGGGGTTTTTAAGAGATGCTCGCCAGGCTGAGGGTGTTCTCAGCAGCCAG tatatctcgatctgttcactaaagaattcaggcctgcttggcatctgtagGTGGCAAGAATTTCGGTCCTTGTCAGATGGAAAAAAGGCAACTCTGACATCTGCCTTTTTGACTATCCAGAATTATCACTTGGAATGCACAGCAATGCAAGCTTGGATGAGAAAGGAGACCAAGGTAATCCAATCCACCCAGAGCCTTGGGAATGGGCTAGCTGGGGTGCTAGCCTTGCAGCGAAAGCTAGCTGGTACTGCAAGAGATCTGGAAGCAATCTCTGCCCGTGTGGGTGAGCTGACTCAAGAAGCAATTGCCTTGGCTTCTGGGTACCCTGCCCAACCTCCTGCTATCAACACACGGCTTGGGGAAGCACAAGCAGGGTGGGAGGATATCCAGGCTTCAACCATGAGACAAAGAGAAGAGTCCTTAGGTGAGACCCAACACCTCCAGGATTTCTTTCGTAGCCTAGATGACTTCCAGGCATGGTTAGGCTGTGCACAAACTACC---GCCACAGAAGAAGGGCCAGCTACTCTTTCTGAGGTGGAAGCCCTCATAGCTCAACATGCTGCTCTACGGGAGGAAGTTGAGAGAGCCCAGAGTGAATACAGCCGCCTCCAAGCCTTGGGTGAAGAGGTAACCCGAGACCAAGCAGATGCACAATGCCGCCTGTTCCTAAGGCAAAGACTAGAAGCTCTTGGGACCAGTTGGAAGCACTTGGGGCGCATGTGGGAGAGTAGGCAGGGCCACCTTGCTCAAGCCCATGGATTCCAGGGGTTTTTGAGAGATGCTCACCAGGCAGAAGGGGTTCTCAGCAGTCAGgtgagcactcagagcaaagccccagtcaagaaaaagaatgtagcgctggg Alignment from Spaln_nt2Genome GTGGCAGCAGTTTCGGTCCCTGGCAGATGGCAAAAAGGCGGCTCTGACATCAGCCCT---GAGCATCCAGAATTACCACCTAGAGTGCACAGAGACCCAGGCCTGGATGAGAGAGAAGACTAAGGTCATTGAGTCCACCCAGGGCCTGGGCAATGATCTAGCTGGTGTGCTGGCCCTGCAGCGGAAGTTGGCGGGTACTGAGAGAGATCTGGAAGCTATCTCTGCCCGGGTGGGTGAGCTGACCCAAGAGGCAAATGCCTTGGCTGCTGGGCACCCAGCTCAAGCTCCTGCCATCAACACCCGGCTTGGAGAGGTACAAGCAGGATGGGAAGATCTTCGGGCG---ACCATGAGGCGGAGAGAAGAGTCCCTGGGTGAGGCTCGGCGGCTGCAGGATTTCCTGCGCAGCTTGGATGACTTCCAGGCCTGGCTAGGCCGCACACAGACCGCTGTAGCCTCCGAAGAAGGGCCAGCCACCCTTCCCGAGGCAGAAGCCCTCTTAGCCCAGCACGCAGCTCTGCGGGGAGAAGTGGAGAGAGCCCAGAGCGAGTACAGCCGCCTCAGGACCTTGGGCGAGGAGGTGACCAGAGACCAGGCTGATCCCCAGTGCCTC---TTCCTCAGACAGAGGCTGGAAGCCCTTGGAACCGGCTGGGAGGAGCTGGGTCGCATGTGGGAGAGCCGGCAAGGCCGCCTGGCCCAGGCCCATGGCTTCCAGGGGTTTTTAAGAGATGCTCGCCAGGCTGAGGGTGTTCTCAGCAGCCAG tatatctcgatctgttcactaaagaattcaggcctgcttggcatctgtagGTGGCAAGAATTTCGGTCCTTGTCAGATGGAAAAAAGGCAACTCTGACATCTGCCTTTTTGACTATCCAGAATTATCACTTGGAATGCACAGCAATGCAAGCTTGGATGAGAAAGGAGACCAAGGTAATCCAATCCACCCAGAGCCTTGGGAATGGGCTAGCTGGGGTGCTAGCCTTGCAGCGAAAGCTAGCTGGTACTGCAAGAGATCTGGAAGCAATCTCTGCCCGTGTGGGTGAGCTGACTCAAGAAGCAATTGCCTTGGCTTCTGGGTACCCTGCCCAACCTCCTGCTATCAACACACGGCTTGGGGAAGCACAAGCAGGGTGGGAGGATATCCAGGCTTCAACCATGAGACAAAGAGAAGAGTCCTTAGGTGAGACCCAACACCTCCAGGATTTCTTTCGTAGCCTAGATGACTTCCAGGCATGGTTAGGCTGTGCACAAA---CTACCGCCACAGAAGAAGGGCCAGCTACTCTTTCTGAGGTGGAAGCCCTCATAGCTCAACATGCTGCTCTACGGGAGGAAGTTGAGAGAGCCCAGAGTGAATACAGCCGCCTCCAAGCCTTGGGTGAAGAGGTAACCCGAGACCAAGCAGATGCACAATGCCGCCTGTTCCTAAGGCAAAGACTAGAAGCTCTTGGGACCAGTTGGAAGCACTTGGGGCGCATGTGGGAGAGTAGGCAGGGCCACCTTGCTCAAGCCCATGGATTCCAGGGGTTTTTGAGAGATGCTCACCAGGCAGAAGGGGTTCTCAGCAGTCAGgtgagcactcagagcaaagccccagtcaagaaaaagaatgtagcgctggg Alignment from Pairagon GTGGCAGCAGTTTCGGTCCCTGGCAGATGGCAAAAAGGCGGCTCTGACATCAGCC---CTGAGCATCCAGAATTACCACCTAGAGTGCACAGAGACCCAGGCCTGGATGAGAGAGAAGACTAAGGTCATTGAGTCCACCCAGGGCCTGGGCAATGATCTAGCTGGTGTGCTGGCCCTGCAGCGGAAGTTGGCGGGTACTGAGAGAGATCTGGAAGCTATCTCTGCCCGGGTGGGTGAGCTGACCCAAGAGGCAAATGCCTTGGCTGCTGGGCACCCAGCTCAAGCTCCTGCCATCAACACCCGGCTTGGAGAGGTACAAGCAGGATGGGAAGATCTTCGGG---CGACCATGAGGCGGAGAGAAGAGTCCCTGGGTGAGGCTCGGCGGCTGCAGGATTTCCTGCGCAGCTTGGATGACTTCCAGGCCTGGCTAGGCCGCACACAGACCGCTGTAGCCTCCGAAGAAGGGCCAGCCACCCTTCCCGAGGCAGAAGCCCTCTTAGCCCAGCACGCAGCTCTGCGGGGAGAAGTGGAGAGAGCCCAGAGCGAGTACAGCCGCCTCAGGACCTTGGGCGAGGAGGTGACCAGAGACCAGGCTGATCCCCAGT---GCCTCTTCCTCAGACAGAGGCTGGAAGCCCTTGGAACCGGCTGGGAGGAGCTGGGTCGCATGTGGGAGAGCCGGCAAGGCCGCCTGGCCCAGGCCCATGGCTTCCAGGGGTTTTTAAGAGATGCTCGCCAGGCTGAGGGTGTTCTCAGCAGCCAG tatatctcgatctgttcactaaagaattcaggcctgcttggcatctgtagGTGGCAAGAATTTCGGTCCTTGTCAGATGGAAAAAAGGCAACTCTGACATCTGCCTTTTTGACTATCCAGAATTATCACTTGGAATGCACAGCAATGCAAGCTTGGATGAGAAAGGAGACCAAGGTAATCCAATCCACCCAGAGCCTTGGGAATGGGCTAGCTGGGGTGCTAGCCTTGCAGCGAAAGCTAGCTGGTACTGCAAGAGATCTGGAAGCAATCTCTGCCCGTGTGGGTGAGCTGACTCAAGAAGCAATTGCCTTGGCTTCTGGGTACCCTGCCCAACCTCCTGCTATCAACACACGGCTTGGGGAAGCACAAGCAGGGTGGGAGGATATCCAGGCTTCAACCATGAGACAAAGAGAAGAGTCCTTAGGTGAGACCCAACACCTCCAGGATTTCTTTCGTAGCCTAGATGACTTCCAGGCATGGTTAGGCTGTGCACAAACTACC---GCCACAGAAGAAGGGCCAGCTACTCTTTCTGAGGTGGAAGCCCTCATAGCTCAACATGCTGCTCTACGGGAGGAAGTTGAGAGAGCCCAGAGTGAATACAGCCGCCTCCAAGCCTTGGGTGAAGAGGTAACCCGAGACCAAGCAGATGCACAATGCCGCCTGTTCCTAAGGCAAAGACTAGAAGCTCTTGGGACCAGTTGGAAGCACTTGGGGCGCATGTGGGAGAGTAGGCAGGGCCACCTTGCTCAAGCCCATGGATTCCAGGGGTTTTTGAGAGATGCTCACCAGGCAGAAGGGGTTCTCAGCAGTCAGgtgagcactcagagcaaagccccagtcaagaaaaagaatgtagcgctggg Alignment from Exonerate_protein2genome GTGGCAGCAGTTTCGGTCCCTGGCAGATGGCAAAAAGGCGGCTCTGACATCAGCC---CTGAGCATCCAGAATTACCACCTAGAGTGCACAGAGACCCAGGCCTGGATGAGAGAGAAGACTAAGGTCATTGAGTCCACCCAGGGCCTGGGCAATGATCTAGCTGGTGTGCTGGCCCTGCAGCGGAAGTTGGCGGGTACTGAGAGAGATCTGGAAGCTATCTCTGCCCGGGTGGGTGAGCTGACCCAAGAGGCAAATGCCTTGGCTGCTGGGCACCCAGCTCAAGCTCCTGCCATCAACACCCGGCTTGGAGAGGTACAAGCAGGATGGGAAGATCTTCGGGCG---ACCATGAGGCGGAGAGAAGAGTCCCTGGGTGAGGCTCGGCGGCTGCAGGATTTCCTGCGCAGCTTGGATGACTTCCAGGCCTGGCTAGGCCGCACACAGACCGCTGTAGCCTCCGAAGAAGGGCCAGCCACCCTTCCCGAGGCAGAAGCCCTCTTAGCCCAGCACGCAGCTCTGCGGGGAGAAGTGGAGAGAGCCCAGAGCGAGTACAGCCGCCTCAGGACCTTGGGCGAGGAGGTGACCAGAGACCAGGCTGATCCCCAGTGC---CTCTTCCTCAGACAGAGGCTGGAAGCCCTTGGAACCGGCTGGGAGGAGCTGGGTCGCATGTGGGAGAGCCGGCAAGGCCGCCTGGCCCAGGCCCATGGCTTCCAGGGGTTTTTAAGAGATGCTCGCCAGGCTGAGGGTGTTCTCAGCAGCCAG tatatctcgatctgttcactaaagaattcaggcctgcttggcatctgtagGTGGCAAGAATTTCGGTCCTTGTCAGATGGAAAAAAGGCAACTCTGACATCTGCCTTTTTGACTATCCAGAATTATCACTTGGAATGCACAGCAATGCAAGCTTGGATGAGAAAGGAGACCAAGGTAATCCAATCCACCCAGAGCCTTGGGAATGGGCTAGCTGGGGTGCTAGCCTTGCAGCGAAAGCTAGCTGGTACTGCAAGAGATCTGGAAGCAATCTCTGCCCGTGTGGGTGAGCTGACTCAAGAAGCAATTGCCTTGGCTTCTGGGTACCCTGCCCAACCTCCTGCTATCAACACACGGCTTGGGGAAGCACAAGCAGGGTGGGAGGATATCCAGGCTTCAACCATGAGACAAAGAGAAGAGTCCTTAGGTGAGACCCAACACCTCCAGGATTTCTTTCGTAGCCTAGATGACTTCCAGGCATGGTTAGGCTGTGCACAAACT---ACCGCCACAGAAGAAGGGCCAGCTACTCTTTCTGAGGTGGAAGCCCTCATAGCTCAACATGCTGCTCTACGGGAGGAAGTTGAGAGAGCCCAGAGTGAATACAGCCGCCTCCAAGCCTTGGGTGAAGAGGTAACCCGAGACCAAGCAGATGCACAATGCCGCCTGTTCCTAAGGCAAAGACTAGAAGCTCTTGGGACCAGTTGGAAGCACTTGGGGCGCATGTGGGAGAGTAGGCAGGGCCACCTTGCTCAAGCCCATGGATTCCAGGGGTTTTTGAGAGATGCTCACCAGGCAGAAGGGGTTCTCAGCAGTCAGgtgagcactcagagcaaagccccagtcaagaaaaagaatgtagcgctggg Alignment from Exonerate_coding2genome GTGGCAGCAGTTTCGGTCCCTGGCAGATGGCAAAAAGGCGGCTCTGACATCAGCC---CTGAGCATCCAGAATTACCACCTAGAGTGCACAGAGACCCAGGCCTGGATGAGAGAGAAGACTAAGGTCATTGAGTCCACCCAGGGCCTGGGCAATGATCTAGCTGGTGTGCTGGCCCTGCAGCGGAAGTTGGCGGGTACTGAGAGAGATCTGGAAGCTATCTCTGCCCGGGTGGGTGAGCTGACCCAAGAGGCAAATGCCTTGGCTGCTGGGCACCCAGCTCAAGCTCCTGCCATCAACACCCGGCTTGGAGAGGTACAAGCAGGATGGGAAGATCTTCGGGCG---ACCATGAGGCGGAGAGAAGAGTCCCTGGGTGAGGCTCGGCGGCTGCAGGATTTCCTGCGCAGCTTGGATGACTTCCAGGCCTGGCTAGGCCGCACACAGACCGCTGTAGCCTCCGAAGAAGGGCCAGCCACCCTTCCCGAGGCAGAAGCCCTCTTAGCCCAGCACGCAGCTCTGCGGGGAGAAGTGGAGAGAGCCCAGAGCGAGTACAGCCGCCTCAGGACCTTGGGCGAGGAGGTGACCAGAGACCAGGCTGATCCCCAGTGC---CTCTTCCTCAGACAGAGGCTGGAAGCCCTTGGAACCGGCTGGGAGGAGCTGGGTCGCATGTGGGAGAGCCGGCAAGGCCGCCTGGCCCAGGCCCATGGCTTCCAGGGGTTTTTAAGAGATGCTCGCCAGGCTGAGGGTGTTCTCAGCAGCCAG tatatctcgatctgttcactaaagaattcaggcctgcttggcatctgtagGTGGCAAGAATTTCGGTCCTTGTCAGATGGAAAAAAGGCAACTCTGACATCTGCCTTTTTGACTATCCAGAATTATCACTTGGAATGCACAGCAATGCAAGCTTGGATGAGAAAGGAGACCAAGGTAATCCAATCCACCCAGAGCCTTGGGAATGGGCTAGCTGGGGTGCTAGCCTTGCAGCGAAAGCTAGCTGGTACTGCAAGAGATCTGGAAGCAATCTCTGCCCGTGTGGGTGAGCTGACTCAAGAAGCAATTGCCTTGGCTTCTGGGTACCCTGCCCAACCTCCTGCTATCAACACACGGCTTGGGGAAGCACAAGCAGGGTGGGAGGATATCCAGGCTTCAACCATGAGACAAAGAGAAGAGTCCTTAGGTGAGACCCAACACCTCCAGGATTTCTTTCGTAGCCTAGATGACTTCCAGGCATGGTTAGGCTGTGCACAAACT---ACCGCCACAGAAGAAGGGCCAGCTACTCTTTCTGAGGTGGAAGCCCTCATAGCTCAACATGCTGCTCTACGGGAGGAAGTTGAGAGAGCCCAGAGTGAATACAGCCGCCTCCAAGCCTTGGGTGAAGAGGTAACCCGAGACCAAGCAGATGCACAATGCCGCCTGTTCCTAAGGCAAAGACTAGAAGCTCTTGGGACCAGTTGGAAGCACTTGGGGCGCATGTGGGAGAGTAGGCAGGGCCACCTTGCTCAAGCCCATGGATTCCAGGGGTTTTTGAGAGATGCTCACCAGGCAGAAGGGGTTCTCAGCAGTCAGgtgagcactcagagcaaagccccagtcaagaaaaagaatgtagcgctggg Alignment from GeneWise GTGGCAGCAGTTTCGGTCCCTGGCAGATGGCAAAAAGGCGGCTCTGACATCAGCC---CTGAGCATCCAGAATTACCACCTAGAGTGCACAGAGACCCAGGCCTGGATGAGAGAGAAGACTAAGGTCATTGAGTCCACCCAGGGCCTGGGCAATGATCTAGCTGGTGTGCTGGCCCTGCAGCGGAAGTTGGCGGGTACTGAGAGAGATCTGGAAGCTATCTCTGCCCGGGTGGGTGAGCTGACCCAAGAGGCAAATGCCTTGGCTGCTGGGCACCCAGCTCAAGCTCCTGCCATCAACACCCGGCTTGGAGAGGTACAAGCAGGATGGGAAGATCTTCGGGCG---ACCATGAGGCGGAGAGAAGAGTCCCTGGGTGAGGCTCGGCGGCTGCAGGATTTCCTGCGCAGCTTGGATGACTTCCAGGCCTGGCTAGGCCGCACACAGACCGCTGTAGCCTCCGAAGAAGGGCCAGCCACCCTTCCCGAGGCAGAAGCCCTCTTAGCCCAGCACGCAGCTCTGCGGGGAGAAGTGGAGAGAGCCCAGAGCGAGTACAGCCGCCTCAGGACCTTGGGCGAGGAGGTGACCAGAGACCAGGCTGATCCCCAGTGC---CTCTTCCTCAGACAGAGGCTGGAAGCCCTTGGAACCGGCTGGGAGGAGCTGGGTCGCATGTGGGAGAGCCGGCAAGGCCGCCTGGCCCAGGCCCATGGCTTCCAGGGGTTTTTAAGAGATGCTCGCCAGGCTGAGGGTGTTCTCAGCAGCCAG tatatctcgatctgttcactaaagaattcaggcctgcttggcatctgtagGTGGCAAGAATTTCGGTCCTTGTCAGATGGAAAAAAGGCAACTCTGACATCTGCCTTTTTGACTATCCAGAATTATCACTTGGAATGCACAGCAATGCAAGCTTGGATGAGAAAGGAGACCAAGGTAATCCAATCCACCCAGAGCCTTGGGAATGGGCTAGCTGGGGTGCTAGCCTTGCAGCGAAAGCTAGCTGGTACTGCAAGAGATCTGGAAGCAATCTCTGCCCGTGTGGGTGAGCTGACTCAAGAAGCAATTGCCTTGGCTTCTGGGTACCCTGCCCAACCTCCTGCTATCAACACACGGCTTGGGGAAGCACAAGCAGGGTGGGAGGATATCCAGGCTTCAACCATGAGACAAAGAGAAGAGTCCTTAGGTGAGACCCAACACCTCCAGGATTTCTTTCGTAGCCTAGATGACTTCCAGGCATGGTTAGGCTGTGCACAAACT---ACCGCCACAGAAGAAGGGCCAGCTACTCTTTCTGAGGTGGAAGCCCTCATAGCTCAACATGCTGCTCTACGGGAGGAAGTTGAGAGAGCCCAGAGTGAATACAGCCGCCTCCAAGCCTTGGGTGAAGAGGTAACCCGAGACCAAGCAGATGCACAATGCCGCCTGTTCCTAAGGCAAAGACTAGAAGCTCTTGGGACCAGTTGGAAGCACTTGGGGCGCATGTGGGAGAGTAGGCAGGGCCACCTTGCTCAAGCCCATGGATTCCAGGGGTTTTTGAGAGATGCTCACCAGGCAGAAGGGGTTCTCAGCAGTCAGgtgagcactcagagcaaagccccagtcaagaaaaagaatgtagcgctggg #### Sptbn2_ID623_18 --> 0 - 0 Original Alignment CTGAGACTCTGGATCGATGAGAAGATGCTGACAGCTCAGGATGTGTCCTATGACGAAGCTCGCAACCTGCACACCAAGTGGCAGAAACACCAGGCATTCATGGCCGAGCTTGCAGCCAACAAGGACTGGCTGGACAAAGTGGACAAG ttgcccaagccccctccccatccacctattttatctcttctttattccagTTGCAGCTCTGGATCGATGATAAGATGCTACTGGCGCAAGACATTCCCTATGAGGAAGCACGAAACTTACATACCAAGTGGCAGAAATACCAAGCTTTTATGGCTGAACTAGCAGCAAACAGAGACTGGTTGGGCAAAGTCGACAAGgtaagctactcggcatggaaagatcaacccattgggtggggataatttgt Alignment from CESAR CTGAGACTCTGGATCGATGAGAAGATGCTGACAGCTCAGGATGTGTCCTATGACGAAGCTCGCAACCTGCACACCAAGTGGCAGAAACACCAGGCATTCATGGCCGAGCTTGCAGCCAACAAGGACTGGCTGGACAAAGTGGACAAG ttgcccaagccccctccccatccacctattttatctcttctttattccagTTGCAGCTCTGGATCGATGATAAGATGCTACTGGCGCAAGACATTCCCTATGAGGAAGCACGAAACTTACATACCAAGTGGCAGAAATACCAAGCTTTTATGGCTGAACTAGCAGCAAACAGAGACTGGTTGGGCAAAGTCGACAAGgtaagctactcggcatggaaagatcaacccattgggtggggataatttgt Alignment from Spaln_aa2Genome CTGAGACTCTGGATCGATGAGAAGATGCTGACAGCTCAGGATGTGTCCTATGACGAAGCTCGCAACCTGCACACCAAGTGGCAGAAACACCAGGCATTCATGGCCGAGCTTGCAGCCAACAAGGACTGGCTGGACAAAGTGGACAAG ttgcccaagccccctccccatccacctattttatctcttctttattccagTTGCAGCTCTGGATCGATGATAAGATGCTACTGGCGCAAGACATTCCCTATGAGGAAGCACGAAACTTACATACCAAGTGGCAGAAATACCAAGCTTTTATGGCTGAACTAGCAGCAAACAGAGACTGGTTGGGCAAAGTCGACAAGgtaagctactcggcatggaaagatcaacccattgggtggggataatttgt Alignment from Spaln_nt2Genome CTGAGACTCTGGATCGATGAGAAGATGCTGACAGCTCAGGATGTGTCCTATGACGAAGCTCGCAACCTGCACACCAAGTGGCAGAAACACCAGGCATTCATGGCCGAGCTTGCAGCCAACAAGGACTGGCTGGACAAAGTGGACAAG ttgcccaagccccctccccatccacctattttatctcttctttattccagTTGCAGCTCTGGATCGATGATAAGATGCTACTGGCGCAAGACATTCCCTATGAGGAAGCACGAAACTTACATACCAAGTGGCAGAAATACCAAGCTTTTATGGCTGAACTAGCAGCAAACAGAGACTGGTTGGGCAAAGTCGACAAGgtaagctactcggcatggaaagatcaacccattgggtggggataatttgt Alignment from Pairagon CTGAGACTCTGGATCGATGAGAAGATGCTGACAGCTCAGGATGTGTCCTATGACGAAGCTCGCAACCTGCACACCAAGTGGCAGAAACACCAGGCATTCATGGCCGAGCTTGCAGCCAACAAGGACTGGCTGGACAAAGTGGACAAG ttgcccaagccccctccccatccacctattttatctcttctttattccagttgcag------CTCTGGATCGATGATAAGATGCTACTGGCGCAAGACATTCCCTATGAGGAAGCACGAAACTTACATACCAAGTGGCAGAAATACCAAGCTTTTATGGCTGAACTAGCAGCAAACAGAGACTGGTTGGGCAAAGTCGACAAGgtaagctactcggcatggaaagatcaacccattgggtggggataatttgt Alignment from Exonerate_protein2genome CTGAGACTCTGGATCGATGAGAAGATGCTGACAGCTCAGGATGTGTCCTATGACGAAGCTCGCAACCTGCACACCAAGTGGCAGAAACACCAGGCATTCATGGCCGAGCTTGCAGCCAACAAGGACTGGCTGGACAAAGTGGACAAG ttgcccaagccccctccccatccacctattttatctcttctttattccagTTGCAGCTCTGGATCGATGATAAGATGCTACTGGCGCAAGACATTCCCTATGAGGAAGCACGAAACTTACATACCAAGTGGCAGAAATACCAAGCTTTTATGGCTGAACTAGCAGCAAACAGAGACTGGTTGGGCAAAGTCGACAAGgtaagctactcggcatggaaagatcaacccattgggtggggataatttgt Alignment from Exonerate_coding2genome CTGAGACTCTGGATCGATGAGAAGATGCTGACAGCTCAGGATGTGTCCTATGACGAAGCTCGCAACCTGCACACCAAGTGGCAGAAACACCAGGCATTCATGGCCGAGCTTGCAGCCAACAAGGACTGGCTGGACAAAGTGGACAAG ttgcccaagccccctccccatccacctattttatctcttctttattccagTTGCAGCTCTGGATCGATGATAAGATGCTACTGGCGCAAGACATTCCCTATGAGGAAGCACGAAACTTACATACCAAGTGGCAGAAATACCAAGCTTTTATGGCTGAACTAGCAGCAAACAGAGACTGGTTGGGCAAAGTCGACAAGgtaagctactcggcatggaaagatcaacccattgggtggggataatttgt Alignment from GeneWise CTGAGACTCTGGATCGATGAGAAGATGCTGACAGCTCAGGATGTGTCCTATGACGAAGCTCGCAACCTGCACACCAAGTGGCAGAAACACCAGGCATTCATGGCCGAGCTTGCAGCCAACAAGGACTGGCTGGACAAAGTGGACAAG ttgcccaagccccctccccatccacctattttatctcttctttattccagTTGCAGCTCTGGATCGATGATAAGATGCTACTGGCGCAAGACATTCCCTATGAGGAAGCACGAAACTTACATACCAAGTGGCAGAAATACCAAGCTTTTATGGCTGAACTAGCAGCAAACAGAGACTGGTTGGGCAAAGTCGACAAGgtaagctactcggcatggaaagatcaacccattgggtggggataatttgt #### Sptbn2_ID637_32 --> 0 - 0 Original Alignment CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT tctgttgaaactcagccagcatttaaatttatctggttctatgtttacagCCCCTGTTAGAGCAGCAGAGGCTTGAACAAGGCAACGTGCCTGAGGGACCTgtaggcttagccgggcgtgcatgtgatatcgaaaggtgatcatgcaggaa Alignment from CESAR CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT tctgttgaaactcagccagcatttaaatttatctggttctatgtttacagCCCCTGTTAGAGCAGCAGAGGCTTGAACAAGGCAACGTGCCTGAGGGACCTgtaggcttagccgggcgtgcatgtgatatcgaaaggtgatcatgcaggaa Alignment from Spaln_aa2Genome CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT tctgttgaaactcagccagcatttaaatttatctggttctatgtttacagCCCCTGTTAGAGCAGCAGAGGCTTGAACAAGGCAACGTGCCTGAGGGACCTgtaggcttagccgggcgtgcatgtgatatcgaaaggtgatcatgcaggaa Alignment from Spaln_nt2Genome CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT tctgttgaaactcagccagcatttaaatttatctggttctatgtttacagCCCCTGTTAGAGCAGCAGAGGCTTGAACAAGGCAACGTGCCTGAGGGACCTgtaggcttagccgggcgtgcatgtgatatcgaaaggtgatcatgcaggaa Alignment from Pairagon CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT tctgttgaaactcagccagcatttaaatttatctggttctatgtttacagCCCCTGTTAGAGCAGCAGAGGCTTGAACAAGGCAACGTGCCTGAGGGACCTgtaggcttagccgggcgtgcatgtgatatcgaaaggtgatcatgcaggaa Alignment from Exonerate_protein2genome CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT tctgttgaaactcagccagcatttaaatttatctggttctatgtttacagCCCCTGTTAGAGCAGCAGAGGCTTGAACAAGGCAACGTGCCTGAGGGACCTgtaggcttagccgggcgtgcatgtgatatcgaaaggtgatcatgcaggaa Alignment from Exonerate_coding2genome tctgttgaaactcagccagcatttaaatttatctggttctatgtttacagcccctgttagagcagcagaggcttgaacaaggcaacgtgcctgagggacctgtaggcttagccgggcgtgcatgtgatatcgaaaggtgatcatgcaggaa Alignment from GeneWise CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT tctgttgaaactcagccagcatttaaatttatctggttctatgtttacagCCCCTGTTAGAGCAGCAGAGGCTTGAACAAGGCAACGTGCCTGAGGGACCTgtaggcttagccgggcgtgcatgtgatatcgaaaggtgatcatgcaggaa #### Ssh3_ID443_13 --> 1 - 0 Original Alignment cCGGCAGAGCCACGTCTGGGAGCAGAAAGTGGGTGTGGTCTCCCCAGAGGAGCCCCTG------GCGCCTGAAGTTTCTACACCATTGCCACCTCTTCCACCAGAACCAGGGGGCAGTGGGGAGGTGATGGTAATGGGCCTGGAAGGAAGCCAGGAAACCCCAAAAGAAGAACTTGGACTGCGGCCCCGCATCAACCTTCGAGGGGTCATGCGCTCCATCAGTCTCCTGGAGCCCTCAGAGTCAGAGAGTACCCCAGAGGCGGGAGGCCTGCCAGAA gagttaattattacagcacttagggttatctgactgtctttctcttatagcCAACAGAGCCGTGTTTGGGAGCAAAAAGTAGGTGGTGTT---CCTGAGGAACCCTTAGCACCAGCACCTGAAGTTTCCACCCCATTGCCATCTTTTCCTCCTGAACCAGGAGGAAGTGGGGAGGTTATGGTGATGGGCCTGGAAGGAAGCCAAGAGATGCCAAAAGAAGATCTGGGACTGCAGCCTAGAATCAACCTCCGGGGGGTCATGCAATCCATTCCTCTCCTTGAACCCTCAGAGGTAGAGAGTACACCAGAGGCAGGGGGTCTGCCAGAGgtaagctcagaccagaggtatgtgccattccagtaatcaccctgtcaccc Alignment from CESAR cCGGCAGAGCCACGTCTGGGAGCAGAAAGTGGGTGTGGTCTCCCCAGAGGAGCCCCTG------GCGCCTGAAGTTTCTACACCATTGCCACCTCTTCCACCAGAACCAGGGGGCAGTGGGGAGGTGATGGTAATGGGCCTGGAAGGAAGCCAGGAAACCCCAAAAGAAGAACTTGGACTGCGGCCCCGCATCAACCTTCGAGGGGTCATGCGCTCCATCAGTCTCCTGGAGCCCTCAGAGTCAGAGAGTACCCCAGAGGCGGGAGGCCTGCCAGAA gagttaattattacagcacttagggttatctgactgtctttctcttatagcCAACAGAGCCGTGTTTGGGAGCAAAAAGTAGGTGGTGTT---CCTGAGGAACCCTTAGCACCAGCACCTGAAGTTTCCACCCCATTGCCATCTTTTCCTCCTGAACCAGGAGGAAGTGGGGAGGTTATGGTGATGGGCCTGGAAGGAAGCCAAGAGATGCCAAAAGAAGATCTGGGACTGCAGCCTAGAATCAACCTCCGGGGGGTCATGCAATCCATTCCTCTCCTTGAACCCTCAGAGGTAGAGAGTACACCAGAGGCAGGGGGTCTGCCAGAGgtaagctcagaccagaggtatgtgccattccagtaatcaccctgtcaccc Alignment from Spaln_aa2Genome CCGGCAGAGCCACGTCTGGGAGCAGAAAGTGGGTGTGGTCTCCCCAGAGGAGCCCCTG------GCGCCTGAAGTTTCTACACCATTGCCACCTCTTCCACCAGAACCAGGGGGCAGTGGGGAGGTGATGGTAATGGGCCTGGAAGGAAGCCAGGAAACCCCAAAAGAAGAACTTGGACTGCGGCCCCGCATCAACCTTCGAGGGGTCATGCGCTCCATCAGTCTCCTGGAGCCCTCAGAGTCAGAGAGTACCCCAGAGGCGGGAGGCCTGCCAGAA gagttaattattacagcacttagggttatctgactgtctttctcttatagCCAACAGAGCCGTGTTTGGGAGCAAAAAGTAGGTGGTGTT---CCTGAGGAACCCTTAGCACCAGCACCTGAAGTTTCCACCCCATTGCCATCTTTTCCTCCTGAACCAGGAGGAAGTGGGGAGGTTATGGTGATGGGCCTGGAAGGAAGCCAAGAGATGCCAAAAGAAGATCTGGGACTGCAGCCTAGAATCAACCTCCGGGGGGTCATGCAATCCATTCCTCTCCTTGAACCCTCAGAGGTAGAGAGTACACCAGAGGCAGGGGGTCTGCCAGAGgtaagctcagaccagaggtatgtgccattccagtaatcaccctgtcaccc Alignment from Spaln_nt2Genome CCGGCAGAGCCACGTCTGGGAGCAGAAAGTGGGTGTGGTCTCCCCAGAGGAGCCCCTGGCGCC------TGAAGTTTCTACACCATTGCCACCTCTTCCACCAGAACCAGGGGGCAGTGGGGAGGTGATGGTAATGGGCCTGGAAGGAAGCCAGGAAACCCCAAAAGAAGAACTTGGACTGCGGCCCCGCATCAACCTTCGAGGGGTCATGCGCTCCATCAGTCTCCTGGAGCCCTCAGAGTCAGAGAGTACCCCAGAGGCGGGAGGCCTGCCAGAA gagttaattattacagcacttagggttatctgactgtctttctcttatagCCAACAGAGCCGTGTTTGGGAGCAAAAAGTAGGTGGTGT---TCCTGAGGAACCCTTAGCACCAGCACCTGAAGTTTCCACCCCATTGCCATCTTTTCCTCCTGAACCAGGAGGAAGTGGGGAGGTTATGGTGATGGGCCTGGAAGGAAGCCAAGAGATGCCAAAAGAAGATCTGGGACTGCAGCCTAGAATCAACCTCCGGGGGGTCATGCAATCCATTCCTCTCCTTGAACCCTCAGAGGTAGAGAGTACACCAGAGGCAGGGGGTCTGCCAGAGgtaagctcagaccagaggtatgtgccattccagtaatcaccctgtcaccc Alignment from Pairagon CCGGCAGAGCCACGTCTGGGAGCAGAAAGTGGGTGTGGTCTCCCCAGAGGAGCCC------CTGGCGCCTGAAGTTTCTACACCATTGCCACCTCTTCCACCAGAACCAGGGGGCAGTGGGGAGGTGATGGTAATGGGCCTGGAAGGAAGCCAGGAAACCCCAAAAGAAGAACTTGGACTGCGGCCCCGCATCAACCTTCGAGGGGTCATGCGCTCCATCAGTCTCCTGGAGCCCTCAGAGTCAGAGAGTACCCCAGAGGCGGGAGGCCTGCCAGAA gagttaattattacagcacttagggttatctgactgtctttctcttatagCCAACAGAGCCGTGTTTGGGAGCAAAAAGTAGGTGGTGT---TCCTGAGGAACCCTTAGCACCAGCACCTGAAGTTTCCACCCCATTGCCATCTTTTCCTCCTGAACCAGGAGGAAGTGGGGAGGTTATGGTGATGGGCCTGGAAGGAAGCCAAGAGATGCCAAAAGAAGATCTGGGACTGCAGCCTAGAATCAACCTCCGGGGGGTCATGCAATCCATTCCTCTCCTTGAACCCTCAGAGGTAGAGAGTACACCAGAGGCAGGGGGTCTGCCAGAGgtaagctcagaccagaggtatgtgccattccagtaatcaccctgtcaccc Alignment from Exonerate_protein2genome CCGGCAGAGCCACGTCTGGGAGCAGAAAGTGGGTGTGGTCTCCCCAGAGGAGCCCCTG------GCGCCTGAAGTTTCTACACCATTGCCACCTCTTCCACCAGAACCAGGGGGCAGTGGGGAGGTGATGGTAATGGGCCTGGAAGGAAGCCAGGAAACCCCAAAAGAAGAACTTGGACTGCGGCCCCGCATCAACCTTCGAGGGGTCATGCGCTCCATCAGTCTCCTGGAGCCCTCAGAGTCAGAGAGTACCCCAGAGGCGGGAGGCCTGCCAGAA gagttaattattacagcacttagggttatctgactgtctttctcttatagCCAACAGAGCCGTGTTTGGGAGCAAAAAGTAGGTGGTGTT---CCTGAGGAACCCTTAGCACCAGCACCTGAAGTTTCCACCCCATTGCCATCTTTTCCTCCTGAACCAGGAGGAAGTGGGGAGGTTATGGTGATGGGCCTGGAAGGAAGCCAAGAGATGCCAAAAGAAGATCTGGGACTGCAGCCTAGAATCAACCTCCGGGGGGTCATGCAATCCATTCCTCTCCTTGAACCCTCAGAGGTAGAGAGTACACCAGAGGCAGGGGGTCTGCCAGAGgtaagctcagaccagaggtatgtgccattccagtaatcaccctgtcaccc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCGGCAGAGCCACGTCTGGGAGCAGAAAGTGGGTGTGGTCTCCCCAGAGGAGCCCCTG------GCGCCTGAAGTTTCTACACCATTGCCACCTCTTCCACCAGAACCAGGGGGCAGTGGGGAGGTGATGGTAATGGGCCTGGAAGGAAGCCAGGAAACCCCAAAAGAAGAACTTGGACTGCGGCCCCGCATCAACCTTCGAGGGGTCATGCGCTCCATCAGTCTCCTGGAGCCCTCAGAGTCAGAGAGTACCCCAGAGGCGGGAGGCCTGCCAGAA gagttaattattacagcacttagggttatctgactgtctttctcttatagCCAACAGAGCCGTGTTTGGGAGCAAAAAGTAGGTGGTGTT---CCTGAGGAACCCTTAGCACCAGCACCTGAAGTTTCCACCCCATTGCCATCTTTTCCTCCTGAACCAGGAGGAAGTGGGGAGGTTATGGTGATGGGCCTGGAAGGAAGCCAAGAGATGCCAAAAGAAGATCTGGGACTGCAGCCTAGAATCAACCTCCGGGGGGTCATGCAATCCATTCCTCTCCTTGAACCCTCAGAGGTAGAGAGTACACCAGAGGCAGGGGGTCTGCCAGAGgtaagctcagaccagaggtatgtgccattccagtaatcaccctgtcaccc #### Ssh3_ID445_11 --> 1 - 2 Original Alignment aGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCag ttatggcatccttggtggttctttactattactcttgattatccctccagaGCAAGTCACATCTTGAATATGGCCCAGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAAAAATCAGCACAGCTTTTACCTCACTGGAAGGAGACACATCGATTTATTGAGGATGCCaggtgaggctgctccataggtttgaagacccaacctcttggaatttaaagtt Alignment from CESAR aGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCag ttatggcatccttggtggttctttactattactcttgattatccctccagaGCAAGTCACATCTTGAATATGGCCCAGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAAAAATCAGCACAGCTTTTACCTCACTGGAAGGAGACACATCGATTTATTGAGGATGCCaggtgaggctgctccataggtttgaagacccaacctcttggaatttaaagtt Alignment from Spaln_aa2Genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG ttatggcatccttggtggttctttactattactcttgattatccctccagAGCAAGTCACATCTTGAATATGGCCCAGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAAAAATCAGCACAGCTTTTACCTCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtgaggctgctccataggtttgaagacccaacctcttggaatttaaagtt Alignment from Spaln_nt2Genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG ttatggcatccttggtggttctttactattactcttgattatccctccagAGCAAGTCACATCTTGAATATGGCCCAGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAAAAATCAGCACAGCTTTTACCTCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtgaggctgctccataggtttgaagacccaacctcttggaatttaaagtt Alignment from Pairagon AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG ttatggcatccttggtggttctttactattactcttgattatccctccagAGCAAGTCACATCTTGAATATGGCCCAGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAAAAATCAGCACAGCTTTTACCTCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtgaggctgctccataggtttgaagacccaacctcttggaatttaaagtt Alignment from Exonerate_protein2genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG ttatggcatccttggtggttctttactattactcttgattatccctccagAGCAAGTCACATCTTGAATATGGCCCAGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAAAAATCAGCACAGCTTTTACCTCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtgaggctgctccataggtttgaagacccaacctcttggaatttaaagtt Alignment from Exonerate_coding2genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG ttatggcatccttggtggttctttactattactcttgattatccctccagAGCAAGTCACATCTTGAATATGGCCCAGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAAAAATCAGCACAGCTTTTACCTCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtgaggctgctccataggtttgaagacccaacctcttggaatttaaagtt Alignment from GeneWise AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG ttatggcatccttggtggttctttactattactcttgattatccctccagAGCAAGTCACATCTTGAATATGGCCCAGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAAAAATCAGCACAGCTTTTACCTCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtgaggctgctccataggtttgaagacccaacctcttggaatttaaagtt #### Ssh3_ID448_8 --> 1 - 0 Original Alignment gGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ggtgtttactgccactaactaacaggtatgcctgtcttttcttttcccaggGCCTCAGAGCAAGAGAAGACA---------------GTAGAATTGTGGCAAGTATTAGATACCAGTGATCTAGAAAGTGTTACCTCCAAAGAGgtaaggtaaagcagggtatctgtcaattgttcctatctgacgccccccat Alignment from CESAR gGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ggtgtttactgccactaactaacaggtatgcctgtcttttcttttcccaggGCCTCAGAGCAAGAGAAGACA---------------GTAGAATTGTGGCAAGTATTAGATACCAGTGATCTAGAAAGTGTTACCTCCAAAGAGgtaaggtaaagcagggtatctgtcaattgttcctatctgacgccccccat Alignment from Spaln_aa2Genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ggtgtttactgccactaactaacaggtatgcctgtcttttcttttcccagGGCCTCAGAGCAAGAGAAGACA---------------GTAGAATTGTGGCAAGTATTAGATACCAGTGATCTAGAAAGTGTTACCTCCAAAGAGgtaaggtaaagcagggtatctgtcaattgttcctatctgacgccccccat Alignment from Spaln_nt2Genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ggtgtttactgccactaactaacaggtatgcctgtcttttcttttcccagGGCCTCAGAGCAAGAGAAGA-----CA----------GTAGAATTGTGGCAAGTATTAGATACCAGTGATCTAGAAAGTGTTACCTCCAAAGAGgtaaggtaaagcagggtatctgtcaattgttcctatctgacgccccccat Alignment from Pairagon GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ggtgtttactgccactaactaacaggtatgcctgtcttttcttttcccagGGCCTCAGAGCAAGAGAAGA---------------CAGTAGAATTGTGGCAAGTATTAGATACCAGTGATCTAGAAAGTGTTACCTCCAAAGAGgtaaggtaaagcagggtatctgtcaattgttcctatctgacgccccccat Alignment from Exonerate_protein2genome AAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ggtgtttactgccactaactaacaggtatgcctgtcttttcttttcccagGGCCTCAGAGCAAGAGAAGACAGTAGAATTGTGGCAAGTATTAGATACCAGTGATCTAGAAAGTGTTACCTCCAAAGAGgtaaggtaaagcagggtatctgtcaattgttcctatctgacgccccccat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ggtgtttactgccactaactaacaggtatgcctgtcttttcttttcccagGGCCTCAGAGCAAGAGAAGACA---------------GTAGAATTGTGGCAAGTATTAGATACCAGTGATCTAGAAAGTGTTACCTCCAAAGAGgtaaggtaaagcagggtatctgtcaattgttcctatctgacgccccccat #### Ssh3_ID451_5 --> 1 - 2 Original Alignment tTCCCAC---------AGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATgg ctattgacattatgcggggagacaaattgcaagtctgcatctcattccagtTGTCATAGCTGCACAAGTTGCACGCTTGGACTTGTTGTGCCCCTTTGGAGTGTTACTCATGTATACCTATACGGAGATgggtaagggggtctccgtcggggaaacaagatagggctgagaaaattgggcc Alignment from CESAR tTCCCACAGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATgg aacaggctgctattgacattatgcggggagacaactgcatctcattccagttgtcatagcTGCACAAGTTGCACGCTTGGACTTGTTGTGCCCCTTTGGAGTGTTACTCATGTATACCTATACGGAGATgggtaagggggtctccgtcggggaaacaagatagggctgagaaaattgggcc Alignment from Spaln_aa2Genome TTCCCACAGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG ctattgacattatgcggggagacaaattgcaagtctgcatctcattccagttgtcatagCTGCACAAGTTGCACGCTTGGACTTGTTGTGCCCCTTTGGAGTGTTACTCATGTATACCTATACGGAGATGGgtaagggggtctccgtcggggaaacaagatagggctgagaaaattgggcc Alignment from Spaln_nt2Genome TTCCCACAGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG ctattgacattatgcggggagacaaattgcaagtctgcatctcattccagttgtcatagCTGCACAAGTTGCACGCTTGGACTTGTTGTGCCCCTTTGGAGTGTTACTCATGTATACCTATACGGAGATGGgtaagggggtctccgtcggggaaacaagatagggctgagaaaattgggcc Alignment from Pairagon TTCCCACAGC---------TGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG ctattgacattatgcggggagacaaattgcaagtctgcatctcattccagTTGTCATAGCTGCACAAGTTGCACGCTTGGACTTGTTGTGCCCCTTTGGAGTGTTACTCATGTATACCTATACGGAGATGGgtaagggggtctccgtcggggaaacaagatagggctgagaaaattgggcc Alignment from Exonerate_protein2genome TTCCCACAGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG ctattgacattatgcggggagacaaattgcaagtctgcatctcattccagttgtcatagCTGCACAAGTTGCACGCTTGGACTTGTTGTGCCCCTTTGGAGTGTTACTCATGTATACCTATACGGAGATGGgtaagggggtctccgtcggggaaacaagatagggctgagaaaattgggcc Alignment from Exonerate_coding2genome ctattgacattatgcggggagacaaattgcaagtctgcatctcattccagttgtcatagctgcacaagttgcacgcttggacttgttgtgcccctttggagtgttactcatgtatacctatacggagatgggtaagggggtctccgtcggggaaacaagatagggctgagaaaattgggcc Alignment from GeneWise TTCCCACAGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG ctattgacattatgcggggagacaaattgcaagtctgcatctcattccagttgtcatagCTGCACAAGTTGCACGCTTGGACTTGTTGTGCCCCTTTGGAGTGTTACTCATGTATACCTATACGGAGATGGgtaagggggtctccgtcggggaaacaagatagggctgagaaaattgggcc #### Ssh3_ID452_4 --> 0 - 2 Original Alignment GCAGCCCAGCTGGAGGCAGCCCGACCCCCCAGACTTCGCTACCTGCTGGTAGTATCCACGGGAGAAGAACTGAGTGAGGAGGCCATCCTGCTTGGGGTGGACTTCCCTGACAGCag agcaatcaagtttgatctgacaactagcgtctgtctgtctgtctgtccagGTTGCCCAATTGGAGGCAGCCCAACCACCCAGGATTCAGTACCCACTGGTAGTATCCATGGGGGAAGAGCTGAGTGAAGAGGCTATTTTACTG------GACTTCCCTGACAGCaggtgagtagttgataagataaggttagctgaggctcaaatgtaccagtgag Alignment from CESAR GCAGCCCAGCTGGAGGCAGCCCGACCCCCCAGACTTCGCTACCTGCTGGTAGTATCCACGGGAGAAGAACTGAGTGAGGAGGCCATCCTGCTTGGGGTGGACTTCCCTGACAGCag agcaatcaagtttgatctgacaactagcgtctgtctgtctgtctgtccagGTTGCCCAATTGGAGGCAGCCCAACCACCCAGGATTCAGTACCCACTGGTAGTATCCATGGGGGAAGAGCTGAGTGAAGAGGCTATTTTACTG------GACTTCCCTGACAGCaggtgagtagttgataagataaggttagctgaggctcaaatgtaccagtgag Alignment from Spaln_aa2Genome GCAGCCCAGCTGGAGGCAGCCCGACCCCCCAGACTTCGCTACCTGCTGGTAGTATCCACGGGAGAAGAACTGAGTGAGGAGGCCATCCTGCTTGGGGTGGACTTCCCTGACAGCAG agcaatcaagtttgatctgacaactagcgtctgtctgtctgtctgtccagGTTGCCCAATTGGAGGCAGCCCAACCACCCAGGATTCAGTACCCACTGGTAGTATCCATGGGGGAAGAGCTGAGTGAAGAGGCTATTTTACTG------GACTTCCCTGACAGCAGgtgagtagttgataagataaggttagctgaggctcaaatgtaccagtgag Alignment from Spaln_nt2Genome GCAGCCCAGCTGGAGGCAGCCCGACCCCCCAGACTTCGCTACCTGCTGGTAGTATCCACGGGAGAAGAACTGAGTGAGGAGGCCATCCTGCTTGGGGTGGACTTCCCTGACAGCAG agcaatcaagtttgatctgacaactagcgtctgtctgtctgtctgtccagGTTGCCCAATTGGAGGCAGCCCAACCACCCAGGATTCAGTACCCACTGGTAGTATCCATGGGGGAAGAGCTGAGTGAAGAGGCTATTTTAC------TGGACTTCCCTGACAGCAGgtgagtagttgataagataaggttagctgaggctcaaatgtaccagtgag Alignment from Pairagon GCAGCCCAGCTGGAGGCAGCCCGACCCCCCAGACTTCGCTACCTGCTGGTAGTATCCACGGGAGAAGAACTGAGTGAGGAGGCCATCCTGCTTGGGGTGGACTTCCCTGACAGCAG agcaatcaagtttgatctgacaactagcgtctgtctgtctgtctgtccagGTTGCCCAATTGGAGGCAGCCCAACCACCCAGGATTCAGTACCCACTGGTAGTATCCATGGGGGAAGAGCTGAGTGAAGAGGCTATTTTAC------TGGACTTCCCTGACAGCAGgtgagtagttgataagataaggttagctgaggctcaaatgtaccagtgag Alignment from Exonerate_protein2genome GCAGCCCAGCTGGAGGCAGCCCGACCCCCCAGACTTCGCTACCTGCTGGTAGTATCCACGGGAGAAGAACTGAGTGAGGAGGCCATCCTGCTTGGGGTGGACTTCCCTGACAGCAG agcaatcaagtttgatctgacaactagcgtctgtctgtctgtctgtccagGTTGCCCAATTGGAGGCAGCCCAACCACCCAGGATTCAGTACCCACTGGTAGTATCCATGGGGGAAGAGCTGAGTGAAGAGGCTATTTTACTG------GACTTCCCTGACAGCAGgtgagtagttgataagataaggttagctgaggctcaaatgtaccagtgag Alignment from Exonerate_coding2genome GCAGCCCAGCTGGAGGCAGCCCGACCCCCCAGACTTCGCTACCTGCTGGTAGTATCCACGGGAGAAGAACTGAGTGAGGAGGCCATCCTGCTTGGGGTGGACTTCCCTGACAGCAG agcaatcaagtttgatctgacaactagcgtctgtctgtctgtctgtccagGTTGCCCAATTGGAGGCAGCCCAACCACCCAGGATTCAGTACCCACTGGTAGTATCCATGGGGGAAGAGCTGAGTGAAGAGGCTATTTTACTG------GACTTCCCTGACAGCAGgtgagtagttgataagataaggttagctgaggctcaaatgtaccagtgag Alignment from GeneWise GCAGCCCAGCTGGAGGCAGCCCGACCCCCCAGACTTCGCTACCTGCTGGTAGTATCCACGGGAGAAGAACTGAGTGAGGAGGCCATCCTGCTTGGGGTGGACTTCCCTGACAGCAG agcaatcaagtttgatctgacaactagcgtctgtctgtctgtctgtccagGTTGCCCAATTGGAGGCAGCCCAACCACCCAGGATTCAGTACCCACTGGTAGTATCCATGGGGGAAGAGCTGAGTGAAGAGGCTATTTTACTG------GACTTCCCTGACAGCAGgtgagtagttgataagataaggttagctgaggctcaaatgtaccagtgag #### Stambpl1_ID6896_4 --> 0 - 0 Original Alignment AAACTGAAGGAGATTGCGTTCCCAAGGACAGACGAATTGAAAACGGACCTGCTAAGGAAATATAACATAGAATACCAAGAGTATTTGCAAAGTAAA ccctcaagcagaaacatgatatcgggtacctgagtgttctttttttacagAAGCTGAAGGAAATTGATTTTCCAAAGATGGATGAGCTGAAAATGGACCTACTCAAAAAATATAATGTAGAGTACCAAGAGTATTCACACAGCAAAgtcagtgtgcttggctcattttttgtgctgtgtagtagatgctctaactt Alignment from CESAR AAACTGAAGGAGATTGCGTTCCCAAGGACAGACGAATTGAAAACGGACCTGCTAAGGAAATATAACATAGAATACCAAGAGTATTTGCAAAGTAAA ccctcaagcagaaacatgatatcgggtacctgagtgttctttttttacagAAGCTGAAGGAAATTGATTTTCCAAAGATGGATGAGCTGAAAATGGACCTACTCAAAAAATATAATGTAGAGTACCAAGAGTATTCACACAGCAAAgtcagtgtgcttggctcattttttgtgctgtgtagtagatgctctaactt Alignment from Spaln_aa2Genome AAACTGAAGGAGATTGCGTTCCCAAGGACAGACGAATTGAAAACGGACCTGCTAAGGAAATATAACATAGAATACCAAGAGTATTTGCAAAGTAAA ccctcaagcagaaacatgatatcgggtacctgagtgttctttttttacagAAGCTGAAGGAAATTGATTTTCCAAAGATGGATGAGCTGAAAATGGACCTACTCAAAAAATATAATGTAGAGTACCAAGAGTATTCACACAGCAAAgtcagtgtgcttggctcattttttgtgctgtgtagtagatgctctaactt Alignment from Spaln_nt2Genome AAACTGAAGGAGATTGCGTTCCCAAGGACAGACGAATTGAAAACGGACCTGCTAAGGAAATATAACATAGAATACCAAGAGTATTTGCAAAGTAAA ccctcaagcagaaacatgatatcgggtacctgagtgttctttttttacagAAGCTGAAGGAAATTGATTTTCCAAAGATGGATGAGCTGAAAATGGACCTACTCAAAAAATATAATGTAGAGTACCAAGAGTATTCACACAGCAAAgtcagtgtgcttggctcattttttgtgctgtgtagtagatgctctaactt Alignment from Pairagon AAACTGAAGGAGATTGCGTTCCCAAGGACAGACGAATTGAAAACGGACCTGCTAAGGAAATATAACATAGAATACCAAGAGTATTTGCAAAGTAAA ccctcaagcagaaacatgatatcgggtacctgagtgttctttttttacagAAGCTGAAGGAAATTGATTTTCCAAAGATGGATGAGCTGAAAATGGACCTACTCAAAAAATATAATGTAGAGTACCAAGAGTATTCACACAGCAAAgtcagtgtgcttggctcattttttgtgctgtgtagtagatgctctaactt Alignment from Exonerate_protein2genome AAACTGAAGGAGATTGCGTTCCCAAGGACAGACGAATTGAAAACGGACCTGCTAAGGAAATATAACATAGAATACCAAGAGTATTTGCAAAGTAAA ccctcaagcagaaacatgatatcgggtacctgagtgttctttttttacagAAGCTGAAGGAAATTGATTTTCCAAAGATGGATGAGCTGAAAATGGACCTACTCAAAAAATATAATGTAGAGTACCAAGAGTATTCACACAGCAAAgtcagtgtgcttggctcattttttgtgctgtgtagtagatgctctaactt Alignment from Exonerate_coding2genome AAACTGAAGGAGATTGCGTTCCCAAGGACAGACGAATTGAAAACGGACCTGCTAAGGAAATATAACATAGAATACCAAGAGTATTTGCAAAGTAAA ccctcaagcagaaacatgatatcgggtacctgagtgttctttttttacagAAGCTGAAGGAAATTGATTTTCCAAAGATGGATGAGCTGAAAATGGACCTACTCAAAAAATATAATGTAGAGTACCAAGAGTATTCACACAGCAAAgtcagtgtgcttggctcattttttgtgctgtgtagtagatgctctaactt Alignment from GeneWise AAACTGAAGGAGATTGCGTTCCCAAGGACAGACGAATTGAAAACGGACCTGCTAAGGAAATATAACATAGAATACCAAGAGTATTTGCAAAGTAAA ccctcaagcagaaacatgatatcgggtacctgagtgttctttttttacagAAGCTGAAGGAAATTGATTTTCCAAAGATGGATGAGCTGAAAATGGACCTACTCAAAAAATATAATGTAGAGTACCAAGAGTATTCACACAGCAAAgtcagtgtgcttggctcattttttgtgctgtgtagtagatgctctaactt #### Stip1_ID1989_12 --> 2 - 0 Original Alignment tcAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG atttctccattatatttcgacaaatcgttgagccagatgacccaccctagacAAGGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGACTATACAAAAGCAATGCAT------CAAAAGGCATTAGACCTAGACTCCTGTTGCAAGgtaaggtagtgataccttgcatacagaccgtgtttatgtaactgagggtt Alignment from CESAR tcAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG gtttctccattatatttcgacaaatcgttgagccagatgacccaccctagacAAGGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGACTATACAAAAGCAATG------CATCAAAAGGCATTAGACCTAGACTCCTGTTGCAAGgtaaggtagtgataccttgcatacagaccgtgtttatgtaactgagggtt Alignment from Spaln_aa2Genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG atttctccattatatttcgacaaatcgttgagccagatgacccaccctagACAAGGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGACTATACAAAAGCAATG------CATCAAAAGGCATTAGACCTAGACTCCTGTTGCAAGgtaaggtagtgataccttgcatacagaccgtgtttatgtaactgagggtt Alignment from Spaln_nt2Genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG atttctccattatatttcgacaaatcgttgagccagatgacccaccctagACAAGGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGACTATACAAAAGCAATGCAT------CAAAAGGCATTAGACCTAGACTCCTGTTGCAAGgtaaggtagtgataccttgcatacagaccgtgtttatgtaactgagggtt Alignment from Pairagon TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG atttctccattatatttcgacaaatcgttgagccagatgacccaccctagACAAGGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGACTATACAAAAGCAATGCAT------CAAAAGGCATTAGACCTAGACTCCTGTTGCAAGgtaaggtagtgataccttgcatacagaccgtgtttatgtaactgagggtt Alignment from Exonerate_protein2genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG atttctccattatatttcgacaaatcgttgagccagatgacccaccctagACAAGGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGACTATACAAAAGCAATG------CATCAAAAGGCATTAGACCTAGACTCCTGTTGCAAGgtaaggtagtgataccttgcatacagaccgtgtttatgtaactgagggtt Alignment from Exonerate_coding2genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG atttctccattatatttcgacaaatcgttgagccagatgacccaccctagACAAGGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGACTATACAAAAGCAATG------CATCAAAAGGCATTAGACCTAGACTCCTGTTGCAAGgtaaggtagtgataccttgcatacagaccgtgtttatgtaactgagggtt Alignment from GeneWise TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG atttctccattatatttcgacaaatcgttgagccagatgacccaccctagACAAGGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGACTATACAAAAGCAATG------CATCAAAAGGCATTAGACCTAGACTCCTGTTGCAAGgtaaggtagtgataccttgcatacagaccgtgtttatgtaactgagggtt #### Stip1_ID1990_11 --> 0 - 1 Original Alignment GACTGTGAGGAGTGCATCCAGCTAGAGCCAACCTTCa caccaccacagggaacagtaaaataattttctctctttgtttatttatagGACTGTGAGGAGTGTATCCAGCTAGAACCAACCTTCagtaaggtttctccattatatttcgacaaatcgtaccttctctgtctataa Alignment from CESAR GACTGTGAGGAGTGCATCCAGCTAGAGCCAACCTTCa caccaccacagggaacagtaaaataattttctctctttgtttatttatagGACTGTGAGGAGTGTATCCAGCTAGAACCAACCTTCagtaaggtttctccattatatttcgacaaatcgttgagccagatgacccac Alignment from Spaln_aa2Genome GACTGTGAGGAGTGCATCCAGCTAGAGCCAACCTTCA caccaccacagggaacagtaaaataattttctctctttgtttatttatagGACTGTGAGGAGTGTATCCAGCTAGAACCAACCTTCAgtaaggtttctccattatatttcgacaaatcgtaccttctctgtctataa Alignment from Spaln_nt2Genome GACTGTGAGGAGTGCATCCAGCTAGAGCCAACCTTCA caccaccacagggaacagtaaaataattttctctctttgtttatttatagGACTGTGAGGAGTGTATCCAGCTAGAACCAACCTTCAgtaaggtttctccattatatttcgacaaatcgtaccttctctgtctataa Alignment from Pairagon GACTGTGAGGAGTGCATCCAGCTAGAGCCAACCTTCA caccaccacagggaacagtaaaataattttctctctttgtttatttatagGACTGTGAGGAGTGTATCCAGCTAGAACCAACCTTCAgtaaggtttctccattatatttcgacaaatcgtaccttctctgtctataa Alignment from Exonerate_protein2genome GACTGTGAGGAGTGCATCCAGCTAGAGCCAACCTTCA caccaccacagggaacagtaaaataattttctctctttgtttatttatagGACTGTGAGGAGTGTATCCAGCTAGAACCAACCTTCAgtaaggtttctccattatatttcgacaaatcgtaccttctctgtctataa Alignment from Exonerate_coding2genome GACTGTGAGGAGTGCATCCAGCTAGAGCCAACCTTCA caccaccacagggaacagtaaaataattttctctctttgtttatttatagGACTGTGAGGAGTGTATCCAGCTAGAACCAACCTTCAgtaaggtttctccattatatttcgacaaatcgtaccttctctgtctataa Alignment from GeneWise GACTGTGAGGAGTGCATCCAGCTAGAGCCAACCTTCA caccaccacagggaacagtaaaataattttctctctttgtttatttatagGACTGTGAGGAGTGTATCCAGCTAGAACCAACCTTCAgtaaggtttctccattatatttcgacaaatcgtaccttctctgtctataa #### Stip1_ID1991_10 --> 2 - 0 Original Alignment ggGACTACCCCCAAGCCATGAAGCACTATACAGAAGCCATTAAAAGGAACCCGAGAGATGCCAAACTGTACAGCAACCGAGCTGCCTGCTACACCAAGCTCCTGGAGTTTCAGCTGGCACTCAAG ctacccccccttgtgagctgtcgctcagggcgtttgctctttcctttcagggGACTACCCACAAGCTATGAAGCATTACACAGAAACAACTAAAAGGAACCCAAGGGATTCAAAGCTTTACACCAACCGAGCTGCCTGCTATACCAAACTCTTGGAGTTTCAGCTTGCGCTAAAAgtaagtcctataggcctggtgggaccgtctgagtcaaagtggataagtca Alignment from CESAR ggGACTACCCCCAAGCCATGAAGCACTATACAGAAGCCATTAAAAGGAACCCGAGAGATGCCAAACTGTACAGCAACCGAGCTGCCTGCTACACCAAGCTCCTGGAGTTTCAGCTGGCACTCAAG ctacccccccttgtgagctgtcgctcagggcgtttgctctttcctttcagggGACTACCCACAAGCTATGAAGCATTACACAGAAACAACTAAAAGGAACCCAAGGGATTCAAAGCTTTACACCAACCGAGCTGCCTGCTATACCAAACTCTTGGAGTTTCAGCTTGCGCTAAAAgtaagtcctataggcctggtgggaccgtctgagtcaaagtggataagtca Alignment from Spaln_aa2Genome GGGACTACCCCCAAGCCATGAAGCACTATACAGAAGCCATTAAAAGGAACCCGAGAGATGCCAAACTGTACAGCAACCGAGCTGCCTGCTACACCAAGCTCCTGGAGTTTCAGCTGGCACTCAAG ctacccccccttgtgagctgtcgctcagggcgtttgctctttcctttcagGGGACTACCCACAAGCTATGAAGCATTACACAGAAACAACTAAAAGGAACCCAAGGGATTCAAAGCTTTACACCAACCGAGCTGCCTGCTATACCAAACTCTTGGAGTTTCAGCTTGCGCTAAAAgtaagtcctataggcctggtgggaccgtctgagtcaaagtggataagtca Alignment from Spaln_nt2Genome GGGACTACCCCCAAGCCATGAAGCACTATACAGAAGCCATTAAAAGGAACCCGAGAGATGCCAAACTGTACAGCAACCGAGCTGCCTGCTACACCAAGCTCCTGGAGTTTCAGCTGGCACTCAAG ctacccccccttgtgagctgtcgctcagggcgtttgctctttcctttcagGGGACTACCCACAAGCTATGAAGCATTACACAGAAACAACTAAAAGGAACCCAAGGGATTCAAAGCTTTACACCAACCGAGCTGCCTGCTATACCAAACTCTTGGAGTTTCAGCTTGCGCTAAAAgtaagtcctataggcctggtgggaccgtctgagtcaaagtggataagtca Alignment from Pairagon GGGACTACCCCCAAGCCATGAAGCACTATACAGAAGCCATTAAAAGGAACCCGAGAGATGCCAAACTGTACAGCAACCGAGCTGCCTGCTACACCAAGCTCCTGGAGTTTCAGCTGGCACTCAAG ctacccccccttgtgagctgtcgctcagggcgtttgctctttcctttcagGGGACTACCCACAAGCTATGAAGCATTACACAGAAACAACTAAAAGGAACCCAAGGGATTCAAAGCTTTACACCAACCGAGCTGCCTGCTATACCAAACTCTTGGAGTTTCAGCTTGCGCTAAAAgtaagtcctataggcctggtgggaccgtctgagtcaaagtggataagtca Alignment from Exonerate_protein2genome GGGACTACCCCCAAGCCATGAAGCACTATACAGAAGCCATTAAAAGGAACCCGAGAGATGCCAAACTGTACAGCAACCGAGCTGCCTGCTACACCAAGCTCCTGGAGTTTCAGCTGGCACTCAAG ctacccccccttgtgagctgtcgctcagggcgtttgctctttcctttcagGGGACTACCCACAAGCTATGAAGCATTACACAGAAACAACTAAAAGGAACCCAAGGGATTCAAAGCTTTACACCAACCGAGCTGCCTGCTATACCAAACTCTTGGAGTTTCAGCTTGCGCTAAAAgtaagtcctataggcctggtgggaccgtctgagtcaaagtggataagtca Alignment from Exonerate_coding2genome GGGACTACCCCCAAGCCATGAAGCACTATACAGAAGCCATTAAAAGGAACCCGAGAGATGCCAAACTGTACAGCAACCGAGCTGCCTGCTACACCAAGCTCCTGGAGTTTCAGCTGGCACTCAAG ctacccccccttgtgagctgtcgctcagggcgtttgctctttcctttcagGGGACTACCCACAAGCTATGAAGCATTACACAGAAACAACTAAAAGGAACCCAAGGGATTCAAAGCTTTACACCAACCGAGCTGCCTGCTATACCAAACTCTTGGAGTTTCAGCTTGCGCTAAAAgtaagtcctataggcctggtgggaccgtctgagtcaaagtggataagtca Alignment from GeneWise GGGACTACCCCCAAGCCATGAAGCACTATACAGAAGCCATTAAAAGGAACCCGAGAGATGCCAAACTGTACAGCAACCGAGCTGCCTGCTACACCAAGCTCCTGGAGTTTCAGCTGGCACTCAAG ctacccccccttgtgagctgtcgctcagggcgtttgctctttcctttcagGGGACTACCCACAAGCTATGAAGCATTACACAGAAACAACTAAAAGGAACCCAAGGGATTCAAAGCTTTACACCAACCGAGCTGCCTGCTATACCAAACTCTTGGAGTTTCAGCTTGCGCTAAAAgtaagtcctataggcctggtgggaccgtctgagtcaaagtggataagtca #### Stip1_ID1994_7 --> 2 - 2 Original Alignment ctGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCaa gttagtttatctagcttttttatctaacaaatctcctttgtgttttctagctGTTCACTTTGACAAGGGTGATTATAACGAATGTCGGGATCTCTGCGAAAAGGCTATAGAGGTTGGAAGAGAGAACCGAGAGGATTACCGGCAAATTGCTaagtattacatcaaattctgagctaggcaaggcacctttcttagtgcctact Alignment from CESAR ctGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCaa gttagtttatctagcttttttatctaacaaatctcctttgtgttttctagctGTTCACTTTGACAAGGGTGATTATAACGAATGTCGGGATCTCTGCGAAAAGGCTATAGAGGTTGGAAGAGAGAACCGAGAGGATTACCGGCAAATTGCTaagtattacatcaaattctgagctaggcaaggcacctttcttagtgcctact Alignment from Spaln_aa2Genome CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA gttagtttatctagcttttttatctaacaaatctcctttgtgttttctagCTGTTCACTTTGACAAGGGTGATTATAACGAATGTCGGGATCTCTGCGAAAAGGCTATAGAGGTTGGAAGAGAGAACCGAGAGGATTACCGGCAAATTGCTAAgtattacatcaaattctgagctaggcaaggcacctttcttagtgcctact Alignment from Spaln_nt2Genome CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA gttagtttatctagcttttttatctaacaaatctcctttgtgttttctagCTGTTCACTTTGACAAGGGTGATTATAACGAATGTCGGGATCTCTGCGAAAAGGCTATAGAGGTTGGAAGAGAGAACCGAGAGGATTACCGGCAAATTGCTAAgtattacatcaaattctgagctaggcaaggcacctttcttagtgcctact Alignment from Pairagon CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA gttagtttatctagcttttttatctaacaaatctcctttgtgttttctagCTGTTCACTTTGACAAGGGTGATTATAACGAATGTCGGGATCTCTGCGAAAAGGCTATAGAGGTTGGAAGAGAGAACCGAGAGGATTACCGGCAAATTGCTAAgtattacatcaaattctgagctaggcaaggcacctttcttagtgcctact Alignment from Exonerate_protein2genome CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA gttagtttatctagcttttttatctaacaaatctcctttgtgttttctagCTGTTCACTTTGACAAGGGTGATTATAACGAATGTCGGGATCTCTGCGAAAAGGCTATAGAGGTTGGAAGAGAGAACCGAGAGGATTACCGGCAAATTGCTAAgtattacatcaaattctgagctaggcaaggcacctttcttagtgcctact Alignment from Exonerate_coding2genome CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA gttagtttatctagcttttttatctaacaaatctcctttgtgttttctagCTGTTCACTTTGACAAGGGTGATTATAACGAATGTCGGGATCTCTGCGAAAAGGCTATAGAGGTTGGAAGAGAGAACCGAGAGGATTACCGGCAAATTGCTAAgtattacatcaaattctgagctaggcaaggcacctttcttagtgcctact Alignment from GeneWise -------------------------------------------------GCTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA GTTAGTTTATCTAGCTTTTTTATCTAACAAATCTCCTTTGTGTTTTCTAGCTGTTCACTTTGACAAGGGTGATTATAACGAATGTCGGGATCTCTGCGAAAAGGCTATAGAGGTTGGAAGAGAGAACCGAGAGGATTACCGGCAAATTGCTAAgtattacatcaaattctgagctaggcaaggcacctttcttagtgcctact #### Stx3_ID3302_4 --> 2 - 1 Original Alignment aaACCAAAGATGACCTTGAACAGCTCACAACTGAGATCAAGAAAAGGGCCAACAACGTCCGGAACAAGCTGAAGa ttaagatccatttcttatatgtcaccttgtgatcttgtctgggttcacagagACAAAAGATGACCTTGAACAGCTGACTACCGAAATCAAAAAAAGGGCCAACAACATTCGCAACAAGCTGAAAagtaattaatacacagagatttcagaataatcaactaactctctcaccacc Alignment from CESAR aaACCAAAGATGACCTTGAACAGCTCACAACTGAGATCAAGAAAAGGGCCAACAACGTCCGGAACAAGCTGAAGa ttaagatccatttcttatatgtcaccttgtgatcttgtctgggttcacagagACAAAAGATGACCTTGAACAGCTGACTACCGAAATCAAAAAAAGGGCCAACAACATTCGCAACAAGCTGAAAagtaattaatacacagagatttcagaataatcaactaactctctcaccacc Alignment from Spaln_aa2Genome AAACCAAAGATGACCTTGAACAGCTCACAACTGAGATCAAGAAAAGGGCCAACAACGTCCGGAACAAGCTGAAGA ttaagatccatttcttatatgtcaccttgtgatcttgtctgggttcacagAGACAAAAGATGACCTTGAACAGCTGACTACCGAAATCAAAAAAAGGGCCAACAACATTCGCAACAAGCTGAAAAgtaattaatacacagagatttcagaataatcaactaactctctcaccacc Alignment from Spaln_nt2Genome AAACCAAAGATGACCTTGAACAGCTCACAACTGAGATCAAGAAAAGGGCCAACAACGTCCGGAACAAGCTGAAGA ttaagatccatttcttatatgtcaccttgtgatcttgtctgggttcacagAGACAAAAGATGACCTTGAACAGCTGACTACCGAAATCAAAAAAAGGGCCAACAACATTCGCAACAAGCTGAAAAgtaattaatacacagagatttcagaataatcaactaactctctcaccacc Alignment from Pairagon AAACCAAAGATGACCTTGAACAGCTCACAACTGAGATCAAGAAAAGGGCCAACAACGTCCGGAACAAGCTGAAGA ttaagatccatttcttatatgtcaccttgtgatcttgtctgggttcacagAGACAAAAGATGACCTTGAACAGCTGACTACCGAAATCAAAAAAAGGGCCAACAACATTCGCAACAAGCTGAAAAgtaattaatacacagagatttcagaataatcaactaactctctcaccacc Alignment from Exonerate_protein2genome AAACCAAAGATGACCTTGAACAGCTCACAACTGAGATCAAGAAAAGGGCCAACAACGTCCGGAACAAGCTGAAGA ttaagatccatttcttatatgtcaccttgtgatcttgtctgggttcacagAGACAAAAGATGACCTTGAACAGCTGACTACCGAAATCAAAAAAAGGGCCAACAACATTCGCAACAAGCTGAAAAgtaattaatacacagagatttcagaataatcaactaactctctcaccacc Alignment from Exonerate_coding2genome AAACCAAAGATGACCTTGAACAGCTCACAACTGAGATCAAGAAAAGGGCCAACAACGTCCGGAACAAGCTGAAGA ttaagatccatttcttatatgtcaccttgtgatcttgtctgggttcacagAGACAAAAGATGACCTTGAACAGCTGACTACCGAAATCAAAAAAAGGGCCAACAACATTCGCAACAAGCTGAAAAgtaattaatacacagagatttcagaataatcaactaactctctcaccacc Alignment from GeneWise AAACCAAAGATGACCTTGAACAGCTCACAACTGAGATCAAGAAAAGGGCCAACAACGTCCGGAACAAGCTGAAGA ttaagatccatttcttatatgtcaccttgtgatcttgtctgggttcacagAGACAAAAGATGACCTTGAACAGCTGACTACCGAAATCAAAAAAAGGGCCAACAACATTCGCAACAAGCTGAAAAgtaattaatacacagagatttcagaataatcaactaactctctcaccacc #### Stx5a_ID2331_3 --> 1 - 1 Original Alignment gCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCt catggtgtcacctcactttttcacacaccattctgctcctctggttccagaCGCATAGGGAAAGATCTGAGTAATACATTTGCCAAACTTGAGAAATTAACAATCtgtagggtctaagactacccaggcaatcagggtctggggtggacctccagc Alignment from CESAR gCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCt catggtgtcacctcactttttcacacaccattctgctcctctggttccagaCGCATAGGGAAAGATCTGAGTAATACATTTGCCAAACTTGAGAAATTAACAATCtgtagggtctaagactacccaggcaatcagggtctggggtggacctccagc Alignment from Spaln_aa2Genome GCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT catggtgtcacctcactttttcacacaccattctgctcctctggttccagACGCATAGGGAAAGATCTGAGTAATACATTTGCCAAACTTGAGAAATTAACAATCTgtagggtctaagactacccaggcaatcagggtctggggtggacctccagc Alignment from Spaln_nt2Genome GCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT catggtgtcacctcactttttcacacaccattctgctcctctggttccagACGCATAGGGAAAGATCTGAGTAATACATTTGCCAAACTTGAGAAATTAACAATCTgtagggtctaagactacccaggcaatcagggtctggggtggacctccagc Alignment from Pairagon ----------------------------------------------CCAGGCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT CATGGTGTCACCTCACTTTTTCACACACCATTCTGCTCCTCTGGTTCCAGACGCATAGGGAAAGATCTGAGTAATACATTTGCCAAACTTGAGAAATTAACAATCTgtagggtctaagactacccaggcaatcagggtctggggtggacctccagc Alignment from Exonerate_protein2genome GCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT catggtgtcacctcactttttcacacaccattctgctcctctggttccagACGCATAGGGAAAGATCTGAGTAATACATTTGCCAAACTTGAGAAATTAACAATCTgtagggtctaagactacccaggcaatcagggtctggggtggacctccagc Alignment from Exonerate_coding2genome GCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT catggtgtcacctcactttttcacacaccattctgctcctctggttccagACGCATAGGGAAAGATCTGAGTAATACATTTGCCAAACTTGAGAAATTAACAATCTgtagggtctaagactacccaggcaatcagggtctggggtggacctccagc Alignment from GeneWise GCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT catggtgtcacctcactttttcacacaccattctgctcctctggttccagACGCATAGGGAAAGATCTGAGTAATACATTTGCCAAACTTGAGAAATTAACAATCTgtagggtctaagactacccaggcaatcagggtctggggtggacctccagc #### Sufu_ID9887_2 --> 1 - 2 Original Alignment gTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATga ttctttcttctgttaaaccttggcctactccaaactgttgcctcttccaggTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGCCCCTCCGCCAACATACCTGAGCATTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATgagtaggtttaccccctcttaagccttattacttttgaaaaggtcttcctgg Alignment from CESAR gTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATga ttctttcttctgttaaaccttggcctactccaaactgttgcctcttccaggTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGCCCCTCCGCCAACATACCTGAGCATTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATgagtaggtttaccccctcttaagccttattacttttgaaaaggtcttcctgg Alignment from Spaln_aa2Genome GTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGA ttctttcttctgttaaaccttggcctactccaaactgttgcctcttccagGTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGCCCCTCCGCCAACATACCTGAGCATTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGAgtaggtttaccccctcttaagccttattacttttgaaaaggtcttcctgg Alignment from Spaln_nt2Genome GTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGA ttctttcttctgttaaaccttggcctactccaaactgttgcctcttccagGTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGCCCCTCCGCCAACATACCTGAGCATTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGAgtaggtttaccccctcttaagccttattacttttgaaaaggtcttcctgg Alignment from Pairagon GTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGA ttctttcttctgttaaaccttggcctactccaaactgttgcctcttccagGTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGCCCCTCCGCCAACATACCTGAGCATTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGAgtaggtttaccccctcttaagccttattacttttgaaaaggtcttcctgg Alignment from Exonerate_protein2genome GTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGA ttctttcttctgttaaaccttggcctactccaaactgttgcctcttccagGTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGCCCCTCCGCCAACATACCTGAGCATTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGAgtaggtttaccccctcttaagccttattacttttgaaaaggtcttcctgg Alignment from Exonerate_coding2genome GTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGA ttctttcttctgttaaaccttggcctactccaaactgttgcctcttccagGTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGCCCCTCCGCCAACATACCTGAGCATTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGAgtaggtttaccccctcttaagccttattacttttgaaaaggtcttcctgg Alignment from GeneWise GTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGTCCTTCTGCCAACATCCCTGAGCACTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGA ttctttcttctgttaaaccttggcctactccaaactgttgcctcttccagGTTGGGTGGTCCGGACCCCTTGGACTATGTTAGCATGTACAGGAACATGGGGAGCCCCTCCGCCAACATACCTGAGCATTGGCACTACATCAGCTTTGGCCTGAGTGATCTCTATGGTGACAACAGAGTCCATGAgtaggtttaccccctcttaagccttattacttttgaaaaggtcttcctgg #### Sufu_ID9909_10 --> 1 - 0 Original Alignment gGGCAGACTCCTACATGGCCGGCACTTCACCTACAAGAGTATCACAGGCGACATGGCCATCACGTTTGTGTCCACGGGAGTGGAAGGCGCCTTTGCCACTGAGGAACACCCGTATGCAGCTCACGGACCCTGGTTACAA accattttgaatcttggcttaaatctcactttttccttttatgttatcaggGGCCGACTCCTACATGGTCAACATTTCAGCTACAAAAGTATCACAGGTGATATGGCAATCATATTTGTATCAATGGGAGTAAGGAGTGCCTTTGCTACTGAGGAACGCCCTTATGCAGCTCATGGTCCTTGGTTACAAgtatgtagttcccccactagtccacaggtgcccctgttgctcccattata Alignment from CESAR gGGCAGACTCCTACATGGCCGGCACTTCACCTACAAGAGTATCACAGGCGACATGGCCATCACGTTTGTGTCCACGGGAGTGGAAGGCGCCTTTGCCACTGAGGAACACCCGTATGCAGCTCACGGACCCTGGTTACAA accattttgaatcttggcttaaatctcactttttccttttatgttatcaggGGCCGACTCCTACATGGTCAACATTTCAGCTACAAAAGTATCACAGGTGATATGGCAATCATATTTGTATCAATGGGAGTAAGGAGTGCCTTTGCTACTGAGGAACGCCCTTATGCAGCTCATGGTCCTTGGTTACAAgtatgtagttcccccactagtccacaggtgcccctgttgctcccattata Alignment from Spaln_aa2Genome GGGCAGACTCCTACATGGCCGGCACTTCACCTACAAGAGTATCACAGGCGACATGGCCATCACGTTTGTGTCCACGGGAGTGGAAGGCGCCTTTGCCACTGAGGAACACCCGTATGCAGCTCACGGACCCTGGTTACAA accattttgaatcttggcttaaatctcactttttccttttatgttatcagGGGCCGACTCCTACATGGTCAACATTTCAGCTACAAAAGTATCACAGGTGATATGGCAATCATATTTGTATCAATGGGAGTAAGGAGTGCCTTTGCTACTGAGGAACGCCCTTATGCAGCTCATGGTCCTTGGTTACAAgtatgtagttcccccactagtccacaggtgcccctgttgctcccattata Alignment from Spaln_nt2Genome GGGCAGACTCCTACATGGCCGGCACTTCACCTACAAGAGTATCACAGGCGACATGGCCATCACGTTTGTGTCCACGGGAGTGGAAGGCGCCTTTGCCACTGAGGAACACCCGTATGCAGCTCACGGACCCTGGTTACAA accattttgaatcttggcttaaatctcactttttccttttatgttatcagGGGCCGACTCCTACATGGTCAACATTTCAGCTACAAAAGTATCACAGGTGATATGGCAATCATATTTGTATCAATGGGAGTAAGGAGTGCCTTTGCTACTGAGGAACGCCCTTATGCAGCTCATGGTCCTTGGTTACAAgtatgtagttcccccactagtccacaggtgcccctgttgctcccattata Alignment from Pairagon GGGCAGACTCCTACATGGCCGGCACTTCACCTACAAGAGTATCACAGGCGACATGGCCATCACGTTTGTGTCCACGGGAGTGGAAGGCGCCTTTGCCACTGAGGAACACCCGTATGCAGCTCACGGACCCTGGTTACAA accattttgaatcttggcttaaatctcactttttccttttatgttatcagGGGCCGACTCCTACATGGTCAACATTTCAGCTACAAAAGTATCACAGGTGATATGGCAATCATATTTGTATCAATGGGAGTAAGGAGTGCCTTTGCTACTGAGGAACGCCCTTATGCAGCTCATGGTCCTTGGTTACAAgtatgtagttcccccactagtccacaggtgcccctgttgctcccattata Alignment from Exonerate_protein2genome GGGCAGACTCCTACATGGCCGGCACTTCACCTACAAGAGTATCACAGGCGACATGGCCATCACGTTTGTGTCCACGGGAGTGGAAGGCGCCTTTGCCACTGAGGAACACCCGTATGCAGCTCACGGACCCTGGTTACAA accattttgaatcttggcttaaatctcactttttccttttatgttatcagGGGCCGACTCCTACATGGTCAACATTTCAGCTACAAAAGTATCACAGGTGATATGGCAATCATATTTGTATCAATGGGAGTAAGGAGTGCCTTTGCTACTGAGGAACGCCCTTATGCAGCTCATGGTCCTTGGTTACAAgtatgtagttcccccactagtccacaggtgcccctgttgctcccattata Alignment from Exonerate_coding2genome GGGCAGACTCCTACATGGCCGGCACTTCACCTACAAGAGTATCACAGGCGACATGGCCATCACGTTTGTGTCCACGGGAGTGGAAGGCGCCTTTGCCACTGAGGAACACCCGTATGCAGCTCACGGACCCTGGTTACAA accattttgaatcttggcttaaatctcactttttccttttatgttatcagGGGCCGACTCCTACATGGTCAACATTTCAGCTACAAAAGTATCACAGGTGATATGGCAATCATATTTGTATCAATGGGAGTAAGGAGTGCCTTTGCTACTGAGGAACGCCCTTATGCAGCTCATGGTCCTTGGTTACAAgtatgtagttcccccactagtccacaggtgcccctgttgctcccattata Alignment from GeneWise GGGCAGACTCCTACATGGCCGGCACTTCACCTACAAGAGTATCACAGGCGACATGGCCATCACGTTTGTGTCCACGGGAGTGGAAGGCGCCTTTGCCACTGAGGAACACCCGTATGCAGCTCACGGACCCTGGTTACAA accattttgaatcttggcttaaatctcactttttccttttatgttatcagGGGCCGACTCCTACATGGTCAACATTTCAGCTACAAAAGTATCACAGGTGATATGGCAATCATATTTGTATCAATGGGAGTAAGGAGTGCCTTTGCTACTGAGGAACGCCCTTATGCAGCTCATGGTCCTTGGTTACAAgtatgtagttcccccactagtccacaggtgcccctgttgctcccattata #### Suv420h1_ID143_5 --> 0 - 2 Original Alignment GTCTTTATTTACTTGCGGATGTTTGCAACTGACAGTGGATTTGAAATACTGCCTTGTAATAGATATTCTTCAGAACAAAATGGAGCCAAGATAGTTGCAACAAAAGAGtg aggactgaggcaaaatagcactgcacatattcatttcctgtttctttcagGTGTTTATTTACGTGCGGATGTTTGCAACAGACAGTGGTCTTGAACTTCTTCCTTGTAACAGATATTCTTCAGAACAAAATGGAGCCAAAATACTTGTGACAAAAGAGtggtgggtgctctttggtgggaaaatacttagacacctggatttgatgtgac Alignment from CESAR GTCTTTATTTACTTGCGGATGTTTGCAACTGACAGTGGATTTGAAATACTGCCTTGTAATAGATATTCTTCAGAACAAAATGGAGCCAAGATAGTTGCAACAAAAGAGtg aggactgaggcaaaatagcactgcacatattcatttcctgtttctttcagGTGTTTATTTACGTGCGGATGTTTGCAACAGACAGTGGTCTTGAACTTCTTCCTTGTAACAGATATTCTTCAGAACAAAATGGAGCCAAAATACTTGTGACAAAAGAGtggtgggtgctctttggtgggaaaatacttagacacctggatttgatgtgac Alignment from Spaln_aa2Genome GTCTTTATTTACTTGCGGATGTTTGCAACTGACAGTGGATTTGAAATACTGCCTTGTAATAGATATTCTTCAGAACAAAATGGAGCCAAGATAGTTGCAACAAAAGAGTG aggactgaggcaaaatagcactgcacatattcatttcctgtttctttcagGTGTTTATTTACGTGCGGATGTTTGCAACAGACAGTGGTCTTGAACTTCTTCCTTGTAACAGATATTCTTCAGAACAAAATGGAGCCAAAATACTTGTGACAAAAGAGTGgtgggtgctctttggtgggaaaatacttagacacctggatttgatgtgac Alignment from Spaln_nt2Genome GTCTTTATTTACTTGCGGATGTTTGCAACTGACAGTGGATTTGAAATACTGCCTTGTAATAGATATTCTTCAGAACAAAATGGAGCCAAGATAGTTGCAACAAAAGAGTG aggactgaggcaaaatagcactgcacatattcatttcctgtttctttcagGTGTTTATTTACGTGCGGATGTTTGCAACAGACAGTGGTCTTGAACTTCTTCCTTGTAACAGATATTCTTCAGAACAAAATGGAGCCAAAATACTTGTGACAAAAGAGTGgtgggtgctctttggtgggaaaatacttagacacctggatttgatgtgac Alignment from Pairagon GTCTTTATTTACTTGCGGATGTTTGCAACTGACAGTGGATTTGAAATACTGCCTTGTAATAGATATTCTTCAGAACAAAATGGAGCCAAGATAGTTGCAACAAAAGAGTG aggactgaggcaaaatagcactgcacatattcatttcctgtttctttcagGTGTTTATTTACGTGCGGATGTTTGCAACAGACAGTGGTCTTGAACTTCTTCCTTGTAACAGATATTCTTCAGAACAAAATGGAGCCAAAATACTTGTGACAAAAGAGTGgtgggtgctctttggtgggaaaatacttagacacctggatttgatgtgac Alignment from Exonerate_protein2genome GTCTTTATTTACTTGCGGATGTTTGCAACTGACAGTGGATTTGAAATACTGCCTTGTAATAGATATTCTTCAGAACAAAATGGAGCCAAGATAGTTGCAACAAAAGAGTG aggactgaggcaaaatagcactgcacatattcatttcctgtttctttcagGTGTTTATTTACGTGCGGATGTTTGCAACAGACAGTGGTCTTGAACTTCTTCCTTGTAACAGATATTCTTCAGAACAAAATGGAGCCAAAATACTTGTGACAAAAGAGTGgtgggtgctctttggtgggaaaatacttagacacctggatttgatgtgac Alignment from Exonerate_coding2genome GTCTTTATTTACTTGCGGATGTTTGCAACTGACAGTGGATTTGAAATACTGCCTTGTAATAGATATTCTTCAGAACAAAATGGAGCCAAGATAGTTGCAACAAAAGAGTG aggactgaggcaaaatagcactgcacatattcatttcctgtttctttcagGTGTTTATTTACGTGCGGATGTTTGCAACAGACAGTGGTCTTGAACTTCTTCCTTGTAACAGATATTCTTCAGAACAAAATGGAGCCAAAATACTTGTGACAAAAGAGTGgtgggtgctctttggtgggaaaatacttagacacctggatttgatgtgac Alignment from GeneWise GTCTTTATTTACTTGCGGATGTTTGCAACTGACAGTGGATTTGAAATACTGCCTTGTAATAGATATTCTTCAGAACAAAATGGAGCCAAGATAGTTGCAACAAAAGAGTG aggactgaggcaaaatagcactgcacatattcatttcctgtttctttcagGTGTTTATTTACGTGCGGATGTTTGCAACAGACAGTGGTCTTGAACTTCTTCCTTGTAACAGATATTCTTCAGAACAAAATGGAGCCAAAATACTTGTGACAAAAGAGTGgtgggtgctctttggtgggaaaatacttagacacctggatttgatgtgac #### Syt12_ID534_6 --> 2 - 0 Original Alignment acCCCTTCGTCAAAGTATACCTGCTGCAGGATGGGAGGAAAATGAGCAAGAAGAAGACGGCTGTGAAGAGGGATGACCCCAACCCAGTGTTCAACGAAGCCATGATCTTCTCAGTGCCAGCCATTGTGCTACAG agtccagcttgaaaaaaccacccatcctttttgttttttttttttttcagacCCCTACATCAAAGTATACTTGCTGCAAGATGGGAGGAAAATGAGGAAGAAGAAGACAGCTGTGAAGAGGGATGAATCAAATCCAGTTTTCAATGAGGCCATGATCTTCCCAGCACCAGCTATAGTGCTACAAgtatgtctgaatgtgaatgtcaccaaactaactgtgccaggtgacaccct Alignment from CESAR acCCCTTCGTCAAAGTATACCTGCTGCAGGATGGGAGGAAAATGAGCAAGAAGAAGACGGCTGTGAAGAGGGATGACCCCAACCCAGTGTTCAACGAAGCCATGATCTTCTCAGTGCCAGCCATTGTGCTACAG agtccagcttgaaaaaaccacccatcctttttgttttttttttttttcagacCCCTACATCAAAGTATACTTGCTGCAAGATGGGAGGAAAATGAGGAAGAAGAAGACAGCTGTGAAGAGGGATGAATCAAATCCAGTTTTCAATGAGGCCATGATCTTCCCAGCACCAGCTATAGTGCTACAAgtatgtctgaatgtgaatgtcaccaaactaactgtgccaggtgacaccct Alignment from Spaln_aa2Genome ACCCCTTCGTCAAAGTATACCTGCTGCAGGATGGGAGGAAAATGAGCAAGAAGAAGACGGCTGTGAAGAGGGATGACCCCAACCCAGTGTTCAACGAAGCCATGATCTTCTCAGTGCCAGCCATTGTGCTACAG agtccagcttgaaaaaaccacccatcctttttgttttttttttttttcagACCCCTACATCAAAGTATACTTGCTGCAAGATGGGAGGAAAATGAGGAAGAAGAAGACAGCTGTGAAGAGGGATGAATCAAATCCAGTTTTCAATGAGGCCATGATCTTCCCAGCACCAGCTATAGTGCTACAAgtatgtctgaatgtgaatgtcaccaaactaactgtgccaggtgacaccct Alignment from Spaln_nt2Genome ACCCCTTCGTCAAAGTATACCTGCTGCAGGATGGGAGGAAAATGAGCAAGAAGAAGACGGCTGTGAAGAGGGATGACCCCAACCCAGTGTTCAACGAAGCCATGATCTTCTCAGTGCCAGCCATTGTGCTACAG agtccagcttgaaaaaaccacccatcctttttgttttttttttttttcagACCCCTACATCAAAGTATACTTGCTGCAAGATGGGAGGAAAATGAGGAAGAAGAAGACAGCTGTGAAGAGGGATGAATCAAATCCAGTTTTCAATGAGGCCATGATCTTCCCAGCACCAGCTATAGTGCTACAAgtatgtctgaatgtgaatgtcaccaaactaactgtgccaggtgacaccct Alignment from Pairagon ACCCCTTCGTCAAAGTATACCTGCTGCAGGATGGGAGGAAAATGAGCAAGAAGAAGACGGCTGTGAAGAGGGATGACCCCAACCCAGTGTTCAACGAAGCCATGATCTTCTCAGTGCCAGCCATTGTGCTACAG agtccagcttgaaaaaaccacccatcctttttgttttttttttttttcagACCCCTACATCAAAGTATACTTGCTGCAAGATGGGAGGAAAATGAGGAAGAAGAAGACAGCTGTGAAGAGGGATGAATCAAATCCAGTTTTCAATGAGGCCATGATCTTCCCAGCACCAGCTATAGTGCTACAAgtatgtctgaatgtgaatgtcaccaaactaactgtgccaggtgacaccct Alignment from Exonerate_protein2genome ACCCCTTCGTCAAAGTATACCTGCTGCAGGATGGGAGGAAAATGAGCAAGAAGAAGACGGCTGTGAAGAGGGATGACCCCAACCCAGTGTTCAACGAAGCCATGATCTTCTCAGTGCCAGCCATTGTGCTACAG agtccagcttgaaaaaaccacccatcctttttgttttttttttttttcagACCCCTACATCAAAGTATACTTGCTGCAAGATGGGAGGAAAATGAGGAAGAAGAAGACAGCTGTGAAGAGGGATGAATCAAATCCAGTTTTCAATGAGGCCATGATCTTCCCAGCACCAGCTATAGTGCTACAAgtatgtctgaatgtgaatgtcaccaaactaactgtgccaggtgacaccct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ACCCCTTCGTCAAAGTATACCTGCTGCAGGATGGGAGGAAAATGAGCAAGAAGAAGACGGCTGTGAAGAGGGATGACCCCAACCCAGTGTTCAACGAAGCCATGATCTTCTCAGTGCCAGCCATTGTGCTACAG agtccagcttgaaaaaaccacccatcctttttgttttttttttttttcagACCCCTACATCAAAGTATACTTGCTGCAAGATGGGAGGAAAATGAGGAAGAAGAAGACAGCTGTGAAGAGGGATGAATCAAATCCAGTTTTCAATGAGGCCATGATCTTCCCAGCACCAGCTATAGTGCTACAAgtatgtctgaatgtgaatgtcaccaaactaactgtgccaggtgacaccct #### Syt12_ID535_5 --> 0 - 1 Original Alignment GCTGCTGACGCTGTGGGAGAGATCCTGCTGTCCCTCAGTTACCTGCCCACAGCTGAGCGGCTGACTGTGGTTGTGGTGAAAGCCAAGAATCTCATCTGGACCAATGAGAAGAGCACAGCAg ttacataatcaaacaggagctaccagactcccctctttcccctgctgtagGCTGCTGAAGCTGTGGGGGAGATTCTGCTGTCTCTCAGTTACCTCCCCAGAGTTGAGCAGCTAACTGTGGTTGTTGTGAAAGCCAAGAATCTCATTTGGACAAATGAGAGGAGCACAGCAggtaagtgagcagatgtgcaggccagttgttgcatgttagtaagtgcctga Alignment from CESAR GCTGCTGACGCTGTGGGAGAGATCCTGCTGTCCCTCAGTTACCTGCCCACAGCTGAGCGGCTGACTGTGGTTGTGGTGAAAGCCAAGAATCTCATCTGGACCAATGAGAAGAGCACAGCAg ttacataatcaaacaggagctaccagactcccctctttcccctgctgtagGCTGCTGAAGCTGTGGGGGAGATTCTGCTGTCTCTCAGTTACCTCCCCAGAGTTGAGCAGCTAACTGTGGTTGTTGTGAAAGCCAAGAATCTCATTTGGACAAATGAGAGGAGCACAGCAggtaagtgagcagatgtgcaggccagttgttgcatgttagtaagtgcctga Alignment from Spaln_aa2Genome GCTGCTGACGCTGTGGGAGAGATCCTGCTGTCCCTCAGTTACCTGCCCACAGCTGAGCGGCTGACTGTGGTTGTGGTGAAAGCCAAGAATCTCATCTGGACCAATGAGAAGAGCACAGCAG ttacataatcaaacaggagctaccagactcccctctttcccctgctgtagGCTGCTGAAGCTGTGGGGGAGATTCTGCTGTCTCTCAGTTACCTCCCCAGAGTTGAGCAGCTAACTGTGGTTGTTGTGAAAGCCAAGAATCTCATTTGGACAAATGAGAGGAGCACAGCAGgtaagtgagcagatgtgcaggccagttgttgcatgttagtaagtgcctga Alignment from Spaln_nt2Genome GCTGCTGACGCTGTGGGAGAGATCCTGCTGTCCCTCAGTTACCTGCCCACAGCTGAGCGGCTGACTGTGGTTGTGGTGAAAGCCAAGAATCTCATCTGGACCAATGAGAAGAGCACAGCAG ttacataatcaaacaggagctaccagactcccctctttcccctgctgtagGCTGCTGAAGCTGTGGGGGAGATTCTGCTGTCTCTCAGTTACCTCCCCAGAGTTGAGCAGCTAACTGTGGTTGTTGTGAAAGCCAAGAATCTCATTTGGACAAATGAGAGGAGCACAGCAGgtaagtgagcagatgtgcaggccagttgttgcatgttagtaagtgcctga Alignment from Pairagon GCTGCTGACGCTGTGGGAGAGATCCTGCTGTCCCTCAGTTACCTGCCCACAGCTGAGCGGCTGACTGTGGTTGTGGTGAAAGCCAAGAATCTCATCTGGACCAATGAGAAGAGCACAGCAG ttacataatcaaacaggagctaccagactcccctctttcccctgctgtagGCTGCTGAAGCTGTGGGGGAGATTCTGCTGTCTCTCAGTTACCTCCCCAGAGTTGAGCAGCTAACTGTGGTTGTTGTGAAAGCCAAGAATCTCATTTGGACAAATGAGAGGAGCACAGCAGgtaagtgagcagatgtgcaggccagttgttgcatgttagtaagtgcctga Alignment from Exonerate_protein2genome GCTGCTGACGCTGTGGGAGAGATCCTGCTGTCCCTCAGTTACCTGCCCACAGCTGAGCGGCTGACTGTGGTTGTGGTGAAAGCCAAGAATCTCATCTGGACCAATGAGAAGAGCACAGCAG ttacataatcaaacaggagctaccagactcccctctttcccctgctgtagGCTGCTGAAGCTGTGGGGGAGATTCTGCTGTCTCTCAGTTACCTCCCCAGAGTTGAGCAGCTAACTGTGGTTGTTGTGAAAGCCAAGAATCTCATTTGGACAAATGAGAGGAGCACAGCAGgtaagtgagcagatgtgcaggccagttgttgcatgttagtaagtgcctga Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCTGCTGACGCTGTGGGAGAGATCCTGCTGTCCCTCAGTTACCTGCCCACAGCTGAGCGGCTGACTGTGGTTGTGGTGAAAGCCAAGAATCTCATCTGGACCAATGAGAAGAGCACAGCAG ttacataatcaaacaggagctaccagactcccctctttcccctgctgtagGCTGCTGAAGCTGTGGGGGAGATTCTGCTGTCTCTCAGTTACCTCCCCAGAGTTGAGCAGCTAACTGTGGTTGTTGTGAAAGCCAAGAATCTCATTTGGACAAATGAGAGGAGCACAGCAGgtaagtgagcagatgtgcaggccagttgttgcatgttagtaagtgcctga #### Syt7_ID2810_3 --> 0 - 2 Original Alignment GGCAAACGCTACAAGAATTCCTTGGAGACGGTGGGCACGCCAGACTCGGGGCGTGGGCGCGGTGAGAAGAAAGCCATCaa tcctcacatctgagccattatcctcagatgctagcccatcatccctccagGGCAAACGCTACAAGAATTCCTCAGAGATGGTCGGCACGCCAGACTCAGGTCGCGGACGTGGTGAGAAGAAAGCCATCaagtgaggccaggatttcagtatgggtcagatagaggtatgaacatacttca Alignment from CESAR GGCAAACGCTACAAGAATTCCTTGGAGACGGTGGGCACGCCAGACTCGGGGCGTGGGCGCGGTGAGAAGAAAGCCATCaa tcctcacatctgagccattatcctcagatgctagcccatcatccctccagGGCAAACGCTACAAGAATTCCTCAGAGATGGTCGGCACGCCAGACTCAGGTCGCGGACGTGGTGAGAAGAAAGCCATCaagtgaggccaggatttcagtatgggtcagatagaggtatgaacatacttca Alignment from Spaln_aa2Genome GGCAAACGCTACAAGAATTCCTTGGAGACGGTGGGCACGCCAGACTCGGGGCGTGGGCGCGGTGAGAAGAAAGCCATCAA tcctcacatctgagccattatcctcagatgctagcccatcatccctccagGGCAAACGCTACAAGAATTCCTCAGAGATGGTCGGCACGCCAGACTCAGGTCGCGGACGTGGTGAGAAGAAAGCCATCAAgtgaggccaggatttcagtatgggtcagatagaggtatgaacatacttca Alignment from Spaln_nt2Genome GGCAAACGCTACAAGAATTCCTTGGAGACGGTGGGCACGCCAGACTCGGGGCGTGGGCGCGGTGAGAAGAAAGCCATCAA tcctcacatctgagccattatcctcagatgctagcccatcatccctccagGGCAAACGCTACAAGAATTCCTCAGAGATGGTCGGCACGCCAGACTCAGGTCGCGGACGTGGTGAGAAGAAAGCCATCAAgtgaggccaggatttcagtatgggtcagatagaggtatgaacatacttca Alignment from Pairagon GGCAAACGCTACAAGAATTCCTTGGAGACGGTGGGCACGCCAGACTCGGGGCGTGGGCGCGGTGAGAAGAAAGCCATCAA tcctcacatctgagccattatcctcagatgctagcccatcatccctccagGGCAAACGCTACAAGAATTCCTCAGAGATGGTCGGCACGCCAGACTCAGGTCGCGGACGTGGTGAGAAGAAAGCCATCAAgtgaggccaggatttcagtatgggtcagatagaggtatgaacatacttca Alignment from Exonerate_protein2genome GGCAAACGCTACAAGAATTCCTTGGAGACGGTGGGCACGCCAGACTCGGGGCGTGGGCGCGGTGAGAAGAAAGCCATCAA tcctcacatctgagccattatcctcagatgctagcccatcatccctccagGGCAAACGCTACAAGAATTCCTCAGAGATGGTCGGCACGCCAGACTCAGGTCGCGGACGTGGTGAGAAGAAAGCCATCAAgtgaggccaggatttcagtatgggtcagatagaggtatgaacatacttca Alignment from Exonerate_coding2genome tcctcacatctgagccattatcctcagatgctagcccatcatccctccagggcaaacgctacaagaattcctcagagatggtcggcacgccagactcaggtcgcggacgtggtgagaagaaagccatcaagtgaggccaggatttcagtatgggtcagatagaggtatgaacatacttca Alignment from GeneWise GGCAAACGCTACAAGAATTCCTTGGAGACGGTGGGCACGCCAGACTCGGGGCGTGGGCGCGGTGAGAAGAAAGCCATCAA tcctcacatctgagccattatcctcagatgctagcccatcatccctccagGGCAAACGCTACAAGAATTCCTCAGAGATGGTCGGCACGCCAGACTCAGGTCGCGGACGTGGTGAGAAGAAAGCCATCAAgtgaggccaggatttcagtatgggtcagatagaggtatgaacatacttca #### Syt7_ID2816_4 --> 1 - 2 Original Alignment tTTCGAGGACTCCACCCTGTCCACGGCCACTACCCTTGAGTCTATCCCCAGCTCCGCGGGAGAGCCGAAATGCCAGCGACCCCGCACACTGATGCGGCAGCAGAGCCTGCAGCAGCCGCTGAGCCAGAACCAGCAGGGCCGGCAGCCCAGTCAGCCCACCACCAGCCAGAGCCTGGGCCAGCTGCAGGCCCACGCGGCCTCGGCACCGGGCTCCAACCCCCGGGCCTATGGTCGGGGTCAGGCTCGGCAGGGCACCTCGGCCGGCTCCAAGTACCGGGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCACGTGGTGGGGCAGATTCGAAACCGAGGCTTGGACATGAAATCCTTCct cagaggaaatagacagttgcggggggcgagtggctatatctgtcctgcagcTTTGAGGACTCCACCCTGTCCACGGCCACTACACTTGAGTCCATCCCAAGCTCTGCGGGAGAGCCAAAATGCCAGCGACCACGCACACTGATGTGGCAGCAGAGCCTGCAGGAGCCACTGAGCCAGAATCAGCAGGGGCGGCAGCCCAGTCAGCCCACCACTAGTCAGAGTCTGGGACAACTGCAGACCCATGCAGCCTCAGCACCAGGATCCAACCCTAGAGCCTATGGCTGGGGTCAGGCTCGGCAAGAGACCTCAGCTGGCTCTAAGTATCATGCAGCTGGGGGCCGCAGCCGTTCCAACCCAGGCAGCTGGGACCATGTGGTGGGGCAGATTCGAAACCGAGGCTTGGATATGAAATCCTTCctgtgagctacatcaactcagcccttgccacgctccctccaatactttacca Alignment from CESAR tTTCGAGGACTCCACCCTGTCCACGGCCACTACCCTTGAGTCTATCCCCAGCTCCGCGGGAGAGCCGAAATGCCAGCGACCCCGCACACTGATGCGGCAGCAGAGCCTGCAGCAGCCGCTGAGCCAGAACCAGCAGGGCCGGCAGCCCAGTCAGCCCACCACCAGCCAGAGCCTGGGCCAGCTGCAGGCCCACGCGGCCTCGGCACCGGGCTCCAACCCCCGGGCCTATGGTCGGGGTCAGGCTCGGCAGGGCACCTCGGCCGGCTCCAAGTACCGGGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCACGTGGTGGGGCAGATTCGAAACCGAGGCTTGGACATGAAATCCTTCct cagaggaaatagacagttgcggggggcgagtggctatatctgtcctgcagcTTTGAGGACTCCACCCTGTCCACGGCCACTACACTTGAGTCCATCCCAAGCTCTGCGGGAGAGCCAAAATGCCAGCGACCACGCACACTGATGTGGCAGCAGAGCCTGCAGGAGCCACTGAGCCAGAATCAGCAGGGGCGGCAGCCCAGTCAGCCCACCACTAGTCAGAGTCTGGGACAACTGCAGACCCATGCAGCCTCAGCACCAGGATCCAACCCTAGAGCCTATGGCTGGGGTCAGGCTCGGCAAGAGACCTCAGCTGGCTCTAAGTATCATGCAGCTGGGGGCCGCAGCCGTTCCAACCCAGGCAGCTGGGACCATGTGGTGGGGCAGATTCGAAACCGAGGCTTGGATATGAAATCCTTCctgtgagctacatcaactcagcccttgccacgctccctccaatactttacca Alignment from Spaln_aa2Genome TTTCGAGGACTCCACCCTGTCCACGGCCACTACCCTTGAGTCTATCCCCAGCTCCGCGGGAGAGCCGAAATGCCAGCGACCCCGCACACTGATGCGGCAGCAGAGCCTGCAGCAGCCGCTGAGCCAGAACCAGCAGGGCCGGCAGCCCAGTCAGCCCACCACCAGCCAGAGCCTGGGCCAGCTGCAGGCCCACGCGGCCTCGGCACCGGGCTCCAACCCCCGGGCCTATGGTCGGGGTCAGGCTCGGCAGGGCACCTCGGCCGGCTCCAAGTACCGGGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCACGTGGTGGGGCAGATTCGAAACCGAGGCTTGGACATGAAATCCTTCCT cagaggaaatagacagttgcggggggcgagtggctatatctgtcctgcagCTTTGAGGACTCCACCCTGTCCACGGCCACTACACTTGAGTCCATCCCAAGCTCTGCGGGAGAGCCAAAATGCCAGCGACCACGCACACTGATGTGGCAGCAGAGCCTGCAGGAGCCACTGAGCCAGAATCAGCAGGGGCGGCAGCCCAGTCAGCCCACCACTAGTCAGAGTCTGGGACAACTGCAGACCCATGCAGCCTCAGCACCAGGATCCAACCCTAGAGCCTATGGCTGGGGTCAGGCTCGGCAAGAGACCTCAGCTGGCTCTAAGTATCATGCAGCTGGGGGCCGCAGCCGTTCCAACCCAGGCAGCTGGGACCATGTGGTGGGGCAGATTCGAAACCGAGGCTTGGATATGAAATCCTTCCTgtgagctacatcaactcagcccttgccacgctccctccaatactttacca Alignment from Spaln_nt2Genome TTTCGAGGACTCCACCCTGTCCACGGCCACTACCCTTGAGTCTATCCCCAGCTCCGCGGGAGAGCCGAAATGCCAGCGACCCCGCACACTGATGCGGCAGCAGAGCCTGCAGCAGCCGCTGAGCCAGAACCAGCAGGGCCGGCAGCCCAGTCAGCCCACCACCAGCCAGAGCCTGGGCCAGCTGCAGGCCCACGCGGCCTCGGCACCGGGCTCCAACCCCCGGGCCTATGGTCGGGGTCAGGCTCGGCAGGGCACCTCGGCCGGCTCCAAGTACCGGGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCACGTGGTGGGGCAGATTCGAAACCGAGGCTTGGACATGAAATCCTTCCT cagaggaaatagacagttgcggggggcgagtggctatatctgtcctgcagCTTTGAGGACTCCACCCTGTCCACGGCCACTACACTTGAGTCCATCCCAAGCTCTGCGGGAGAGCCAAAATGCCAGCGACCACGCACACTGATGTGGCAGCAGAGCCTGCAGGAGCCACTGAGCCAGAATCAGCAGGGGCGGCAGCCCAGTCAGCCCACCACTAGTCAGAGTCTGGGACAACTGCAGACCCATGCAGCCTCAGCACCAGGATCCAACCCTAGAGCCTATGGCTGGGGTCAGGCTCGGCAAGAGACCTCAGCTGGCTCTAAGTATCATGCAGCTGGGGGCCGCAGCCGTTCCAACCCAGGCAGCTGGGACCATGTGGTGGGGCAGATTCGAAACCGAGGCTTGGATATGAAATCCTTCCTgtgagctacatcaactcagcccttgccacgctccctccaatactttacca Alignment from Pairagon TTTCGAGGACTCCACCCTGTCCACGGCCACTACCCTTGAGTCTATCCCCAGCTCCGCGGGAGAGCCGAAATGCCAGCGACCCCGCACACTGATGCGGCAGCAGAGCCTGCAGCAGCCGCTGAGCCAGAACCAGCAGGGCCGGCAGCCCAGTCAGCCCACCACCAGCCAGAGCCTGGGCCAGCTGCAGGCCCACGCGGCCTCGGCACCGGGCTCCAACCCCCGGGCCTATGGTCGGGGTCAGGCTCGGCAGGGCACCTCGGCCGGCTCCAAGTACCGGGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCACGTGGTGGGGCAGATTCGAAACCGAGGCTTGGACATGAAATCCTTCCT cagaggaaatagacagttgcggggggcgagtggctatatctgtcctgcagCTTTGAGGACTCCACCCTGTCCACGGCCACTACACTTGAGTCCATCCCAAGCTCTGCGGGAGAGCCAAAATGCCAGCGACCACGCACACTGATGTGGCAGCAGAGCCTGCAGGAGCCACTGAGCCAGAATCAGCAGGGGCGGCAGCCCAGTCAGCCCACCACTAGTCAGAGTCTGGGACAACTGCAGACCCATGCAGCCTCAGCACCAGGATCCAACCCTAGAGCCTATGGCTGGGGTCAGGCTCGGCAAGAGACCTCAGCTGGCTCTAAGTATCATGCAGCTGGGGGCCGCAGCCGTTCCAACCCAGGCAGCTGGGACCATGTGGTGGGGCAGATTCGAAACCGAGGCTTGGATATGAAATCCTTCCTgtgagctacatcaactcagcccttgccacgctccctccaatactttacca Alignment from Exonerate_protein2genome TTTCGAGGACTCCACCCTGTCCACGGCCACTACCCTTGAGTCTATCCCCAGCTCCGCGGGAGAGCCGAAATGCCAGCGACCCCGCACACTGATGCGGCAGCAGAGCCTGCAGCAGCCGCTGAGCCAGAACCAGCAGGGCCGGCAGCCCAGTCAGCCCACCACCAGCCAGAGCCTGGGCCAGCTGCAGGCCCACGCGGCCTCGGCACCGGGCTCCAACCCCCGGGCCTATGGTCGGGGTCAGGCTCGGCAGGGCACCTCGGCCGGCTCCAAGTACCGGGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCACGTGGTGGGGCAGATTCGAAACCGAGGCTTGGACATGAAATCCTTCCT cagaggaaatagacagttgcggggggcgagtggctatatctgtcctgcagCTTTGAGGACTCCACCCTGTCCACGGCCACTACACTTGAGTCCATCCCAAGCTCTGCGGGAGAGCCAAAATGCCAGCGACCACGCACACTGATGTGGCAGCAGAGCCTGCAGGAGCCACTGAGCCAGAATCAGCAGGGGCGGCAGCCCAGTCAGCCCACCACTAGTCAGAGTCTGGGACAACTGCAGACCCATGCAGCCTCAGCACCAGGATCCAACCCTAGAGCCTATGGCTGGGGTCAGGCTCGGCAAGAGACCTCAGCTGGCTCTAAGTATCATGCAGCTGGGGGCCGCAGCCGTTCCAACCCAGGCAGCTGGGACCATGTGGTGGGGCAGATTCGAAACCGAGGCTTGGATATGAAATCCTTCCTgtgagctacatcaactcagcccttgccacgctccctccaatactttacca Alignment from Exonerate_coding2genome cagaggaaatagacagttgcggggggcgagtggctatatctgtcctgcagctttgaggactccaccctgtccacggccactacacttgagtccatcccaagctctgcgggagagccaaaatgccagcgaccacgcacactgatgtggcagcagagcctgcaggagccactgagccagaatcagcaggggcggcagcccagtcagcccaccactagtcagagtctgggacaactgcagacccatgcagcctcagcaccaggatccaaccctagagcctatggctggggtcaggctcggcaagagacctcagctggctctaagtatcatgcagctgggggccgcagccgttccaacccaggcagctgggaccatgtggtggggcagattcgaaaccgaggcttggatatgaaatccttcctgtgagctacatcaactcagcccttgccacgctccctccaatactttacca Alignment from GeneWise TTTCGAGGACTCCACCCTGTCCACGGCCACTACCCTTGAGTCTATCCCCAGCTCCGCGGGAGAGCCGAAATGCCAGCGACCCCGCACACTGATGCGGCAGCAGAGCCTGCAGCAGCCGCTGAGCCAGAACCAGCAGGGCCGGCAGCCCAGTCAGCCCACCACCAGCCAGAGCCTGGGCCAGCTGCAGGCCCACGCGGCCTCGGCACCGGGCTCCAACCCCCGGGCCTATGGTCGGGGTCAGGCTCGGCAGGGCACCTCGGCCGGCTCCAAGTACCGGGCAGCTGGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCACGTGGTGGGGCAGATTCGAAACCGAGGCTTGGACATGAAATCCTTCCT cagaggaaatagacagttgcggggggcgagtggctatatctgtcctgcagCTTTGAGGACTCCACCCTGTCCACGGCCACTACACTTGAGTCCATCCCAAGCTCTGCGGGAGAGCCAAAATGCCAGCGACCACGCACACTGATGTGGCAGCAGAGCCTGCAGGAGCCACTGAGCCAGAATCAGCAGGGGCGGCAGCCCAGTCAGCCCACCACTAGTCAGAGTCTGGGACAACTGCAGACCCATGCAGCCTCAGCACCAGGATCCAACCCTAGAGCCTATGGCTGGGGTCAGGCTCGGCAAGAGACCTCAGCTGGCTCTAAGTATCATGCAGCTGGGGGCCGCAGCCGTTCCAACCCAGGCAGCTGGGACCATGTGGTGGGGCAGATTCGAAACCGAGGCTTGGATATGAAATCCTTCCTgtgagctacatcaactcagcccttgccacgctccctccaatactttacca #### Syt7_ID2818_5 --> 1 - 2 Original Alignment gGAAGGCCGGATGGTGGTGCTATCCCTGGTATTAGGGCTTTCGGAACAGGATGACTTTGCCAATATCCCTGACCTGCAAAACCCAGGAACCCAGCAGAACCAGAACGCTCAGGGGGACAAGag cctggacataccacacttgcaaaaaccaccccctcccttgccacctgcaggGAGGGTCGAATGGTGGAGCTATTGCTTGTATTAGGGCTTCTGGAACAGGATGACTTTGCGAATATCCCAGACCTGCAAAACCCAGGAACCCAGCAGAACCAAAATGCTCAGGGAGACAAGaggtgtgttctaatattagacaaatggagaagaggtcagtcacagtggtaaa Alignment from CESAR gGAAGGCCGGATGGTGGTGCTATCCCTGGTATTAGGGCTTTCGGAACAGGATGACTTTGCCAATATCCCTGACCTGCAAAACCCAGGAACCCAGCAGAACCAGAACGCTCAGGGGGACAAGag cctggacataccacacttgcaaaaaccaccccctcccttgccacctgcaggGAGGGTCGAATGGTGGAGCTATTGCTTGTATTAGGGCTTCTGGAACAGGATGACTTTGCGAATATCCCAGACCTGCAAAACCCAGGAACCCAGCAGAACCAAAATGCTCAGGGAGACAAGaggtgtgttctaatattagacaaatggagaagaggtcagtcacagtggtaaa Alignment from Spaln_aa2Genome GGAAGGCCGGATGGTGGTGCTATCCCTGGTATTAGGGCTTTCGGAACAGGATGACTTTGCCAATATCCCTGACCTGCAAAACCCAGGAACCCAGCAGAACCAGAACGCTCAGGGGGACAAGAG cctggacataccacacttgcaaaaaccaccccctcccttgccacctgcagGGAGGGTCGAATGGTGGAGCTATTGCTTGTATTAGGGCTTCTGGAACAGGATGACTTTGCGAATATCCCAGACCTGCAAAACCCAGGAACCCAGCAGAACCAAAATGCTCAGGGAGACAAGAGgtgtgttctaatattagacaaatggagaagaggtcagtcacagtggtaaa Alignment from Spaln_nt2Genome GGAAGGCCGGATGGTGGTGCTATCCCTGGTATTAGGGCTTTCGGAACAGGATGACTTTGCCAATATCCCTGACCTGCAAAACCCAGGAACCCAGCAGAACCAGAACGCTCAGGGGGACAAGAG cctggacataccacacttgcaaaaaccaccccctcccttgccacctgcagGGAGGGTCGAATGGTGGAGCTATTGCTTGTATTAGGGCTTCTGGAACAGGATGACTTTGCGAATATCCCAGACCTGCAAAACCCAGGAACCCAGCAGAACCAAAATGCTCAGGGAGACAAGAGgtgtgttctaatattagacaaatggagaagaggtcagtcacagtggtaaa Alignment from Pairagon GGAAGGCCGGATGGTGGTGCTATCCCTGGTATTAGGGCTTTCGGAACAGGATGACTTTGCCAATATCCCTGACCTGCAAAACCCAGGAACCCAGCAGAACCAGAACGCTCAGGGGGACAAGAG cctggacataccacacttgcaaaaaccaccccctcccttgccacctgcagGGAGGGTCGAATGGTGGAGCTATTGCTTGTATTAGGGCTTCTGGAACAGGATGACTTTGCGAATATCCCAGACCTGCAAAACCCAGGAACCCAGCAGAACCAAAATGCTCAGGGAGACAAGAGgtgtgttctaatattagacaaatggagaagaggtcagtcacagtggtaaa Alignment from Exonerate_protein2genome GGAAGGCCGGATGGTGGTGCTATCCCTGGTATTAGGGCTTTCGGAACAGGATGACTTTGCCAATATCCCTGACCTGCAAAACCCAGGAACCCAGCAGAACCAGAACGCTCAGGGGGACAAGAG cctggacataccacacttgcaaaaaccaccccctcccttgccacctgcagGGAGGGTCGAATGGTGGAGCTATTGCTTGTATTAGGGCTTCTGGAACAGGATGACTTTGCGAATATCCCAGACCTGCAAAACCCAGGAACCCAGCAGAACCAAAATGCTCAGGGAGACAAGAGgtgtgttctaatattagacaaatggagaagaggtcagtcacagtggtaaa Alignment from Exonerate_coding2genome cctggacataccacacttgcaaaaaccaccccctcccttgccacctgcagggagggtcgaatggtggagctattgcttgtattagggcttctggaacaggatgactttgcgaatatcccagacctgcaaaacccaggaacccagcagaaccaaaatgctcagggagacaagaggtgtgttctaatattagacaaatggagaagaggtcagtcacagtggtaaa Alignment from GeneWise GGAAGGCCGGATGGTGGTGCTATCCCTGGTATTAGGGCTTTCGGAACAGGATGACTTTGCCAATATCCCTGACCTGCAAAACCCAGGAACCCAGCAGAACCAGAACGCTCAGGGGGACAAGAG cctggacataccacacttgcaaaaaccaccccctcccttgccacctgcagGGAGGGTCGAATGGTGGAGCTATTGCTTGTATTAGGGCTTCTGGAACAGGATGACTTTGCGAATATCCCAGACCTGCAAAACCCAGGAACCCAGCAGAACCAAAATGCTCAGGGAGACAAGAGgtgtgttctaatattagacaaatggagaagaggtcagtcacagtggtaaa #### Syt7_ID2826_7 --> 0 - 1 Original Alignment CTCTCCCCGGGTTCTGAGGAGGATGAGGCCCACGAGGGCTGCAGCCGAGAGAACCTGGGCCGAATCCAGTTCAGTGTTGGCTACAACTTCCAAGAGTCCACACTCACCGTGAAGGTCATGAAGGCCCAAGAGCTGCCAGCCAAGGACTTCAGCGGTACTAGTGACCCCTTTGTCAAGATCTACCTGCTACCCGACAAGAAGCACAAACTGGAGACCAAGGTGAAGCGGAAGAATCTAAACCCGCACTGGAATGAGACCTTTCTATTTGAAg tcagtttctagctccagggcaaagatctagtttcctcattgtctctccagCTTTCTCCAGGTTCTGAGGAGGATGAGGCCCATGAAGGCTGCAGCCGGGAGAACTTGGGCCGAATCCAGTTCAGTGTTGGCTATAACTTTCAAGAGTCCACGCTCACTGTGAAGGTCATGAAGGCCCAAGAGCTGCCAGCCAAGGACTTCAGTGGTACTAGTGACCCCTTTGTCAAGATTTATCTGCTACCAGATAAGAAACACAAATTGGAGACCAAAGTGAAGCGGAAGAACCTAAACCCACACTGGAATGAGACCTTTCTATTTGAAggtaagtctggtatacccttgtggcctggacccatggaccaatctaccaat Alignment from CESAR CTCTCCCCGGGTTCTGAGGAGGATGAGGCCCACGAGGGCTGCAGCCGAGAGAACCTGGGCCGAATCCAGTTCAGTGTTGGCTACAACTTCCAAGAGTCCACACTCACCGTGAAGGTCATGAAGGCCCAAGAGCTGCCAGCCAAGGACTTCAGCGGTACTAGTGACCCCTTTGTCAAGATCTACCTGCTACCCGACAAGAAGCACAAACTGGAGACCAAGGTGAAGCGGAAGAATCTAAACCCGCACTGGAATGAGACCTTTCTATTTGAAg tcagtttctagctccagggcaaagatctagtttcctcattgtctctccagCTTTCTCCAGGTTCTGAGGAGGATGAGGCCCATGAAGGCTGCAGCCGGGAGAACTTGGGCCGAATCCAGTTCAGTGTTGGCTATAACTTTCAAGAGTCCACGCTCACTGTGAAGGTCATGAAGGCCCAAGAGCTGCCAGCCAAGGACTTCAGTGGTACTAGTGACCCCTTTGTCAAGATTTATCTGCTACCAGATAAGAAACACAAATTGGAGACCAAAGTGAAGCGGAAGAACCTAAACCCACACTGGAATGAGACCTTTCTATTTGAAggtaagtctggtatacccttgtggcctggacccatggaccaatctaccaat Alignment from Spaln_aa2Genome CTCTCCCCGGGTTCTGAGGAGGATGAGGCCCACGAGGGCTGCAGCCGAGAGAACCTGGGCCGAATCCAGTTCAGTGTTGGCTACAACTTCCAAGAGTCCACACTCACCGTGAAGGTCATGAAGGCCCAAGAGCTGCCAGCCAAGGACTTCAGCGGTACTAGTGACCCCTTTGTCAAGATCTACCTGCTACCCGACAAGAAGCACAAACTGGAGACCAAGGTGAAGCGGAAGAATCTAAACCCGCACTGGAATGAGACCTTTCTATTTGAAG tcagtttctagctccagggcaaagatctagtttcctcattgtctctccagCTTTCTCCAGGTTCTGAGGAGGATGAGGCCCATGAAGGCTGCAGCCGGGAGAACTTGGGCCGAATCCAGTTCAGTGTTGGCTATAACTTTCAAGAGTCCACGCTCACTGTGAAGGTCATGAAGGCCCAAGAGCTGCCAGCCAAGGACTTCAGTGGTACTAGTGACCCCTTTGTCAAGATTTATCTGCTACCAGATAAGAAACACAAATTGGAGACCAAAGTGAAGCGGAAGAACCTAAACCCACACTGGAATGAGACCTTTCTATTTGAAGgtaagtctggtatacccttgtggcctggacccatggaccaatctaccaat Alignment from Spaln_nt2Genome CTCTCCCCGGGTTCTGAGGAGGATGAGGCCCACGAGGGCTGCAGCCGAGAGAACCTGGGCCGAATCCAGTTCAGTGTTGGCTACAACTTCCAAGAGTCCACACTCACCGTGAAGGTCATGAAGGCCCAAGAGCTGCCAGCCAAGGACTTCAGCGGTACTAGTGACCCCTTTGTCAAGATCTACCTGCTACCCGACAAGAAGCACAAACTGGAGACCAAGGTGAAGCGGAAGAATCTAAACCCGCACTGGAATGAGACCTTTCTATTTGAAG tcagtttctagctccagggcaaagatctagtttcctcattgtctctccagCTTTCTCCAGGTTCTGAGGAGGATGAGGCCCATGAAGGCTGCAGCCGGGAGAACTTGGGCCGAATCCAGTTCAGTGTTGGCTATAACTTTCAAGAGTCCACGCTCACTGTGAAGGTCATGAAGGCCCAAGAGCTGCCAGCCAAGGACTTCAGTGGTACTAGTGACCCCTTTGTCAAGATTTATCTGCTACCAGATAAGAAACACAAATTGGAGACCAAAGTGAAGCGGAAGAACCTAAACCCACACTGGAATGAGACCTTTCTATTTGAAGgtaagtctggtatacccttgtggcctggacccatggaccaatctaccaat Alignment from Pairagon CTCTCCCCGGGTTCTGAGGAGGATGAGGCCCACGAGGGCTGCAGCCGAGAGAACCTGGGCCGAATCCAGTTCAGTGTTGGCTACAACTTCCAAGAGTCCACACTCACCGTGAAGGTCATGAAGGCCCAAGAGCTGCCAGCCAAGGACTTCAGCGGTACTAGTGACCCCTTTGTCAAGATCTACCTGCTACCCGACAAGAAGCACAAACTGGAGACCAAGGTGAAGCGGAAGAATCTAAACCCGCACTGGAATGAGACCTTTCTATTTGAAG tcagtttctagctccagggcaaagatctagtttcctcattgtctctccagCTTTCTCCAGGTTCTGAGGAGGATGAGGCCCATGAAGGCTGCAGCCGGGAGAACTTGGGCCGAATCCAGTTCAGTGTTGGCTATAACTTTCAAGAGTCCACGCTCACTGTGAAGGTCATGAAGGCCCAAGAGCTGCCAGCCAAGGACTTCAGTGGTACTAGTGACCCCTTTGTCAAGATTTATCTGCTACCAGATAAGAAACACAAATTGGAGACCAAAGTGAAGCGGAAGAACCTAAACCCACACTGGAATGAGACCTTTCTATTTGAAGgtaagtctggtatacccttgtggcctggacccatggaccaatctaccaat Alignment from Exonerate_protein2genome CTCTCCCCGGGTTCTGAGGAGGATGAGGCCCACGAGGGCTGCAGCCGAGAGAACCTGGGCCGAATCCAGTTCAGTGTTGGCTACAACTTCCAAGAGTCCACACTCACCGTGAAGGTCATGAAGGCCCAAGAGCTGCCAGCCAAGGACTTCAGCGGTACTAGTGACCCCTTTGTCAAGATCTACCTGCTACCCGACAAGAAGCACAAACTGGAGACCAAGGTGAAGCGGAAGAATCTAAACCCGCACTGGAATGAGACCTTTCTATTTGAAG tcagtttctagctccagggcaaagatctagtttcctcattgtctctccagCTTTCTCCAGGTTCTGAGGAGGATGAGGCCCATGAAGGCTGCAGCCGGGAGAACTTGGGCCGAATCCAGTTCAGTGTTGGCTATAACTTTCAAGAGTCCACGCTCACTGTGAAGGTCATGAAGGCCCAAGAGCTGCCAGCCAAGGACTTCAGTGGTACTAGTGACCCCTTTGTCAAGATTTATCTGCTACCAGATAAGAAACACAAATTGGAGACCAAAGTGAAGCGGAAGAACCTAAACCCACACTGGAATGAGACCTTTCTATTTGAAGgtaagtctggtatacccttgtggcctggacccatggaccaatctaccaat Alignment from Exonerate_coding2genome CTTACCAGCGAGATGCTCATGCTCTCCCCGGGTTCTGAGGAGGATGAGGCCCACGAGGGCTGCAGCCGAGAGAACCTGGGCCGAATCCAGTTCAGTGTTGGCTACAACTTCCAAGAGTCCACACTCACCGTGAAGGTCATGAAGGCCCAAGAGCTGCCAGCCAAGGACTTCAGCGGTACTAGTGACCCCTTTGTCAAGATCTACCTGCTACCCGACAAGAAGCACAAACTGGAGACCAAGGTGAAGCGGAAGAATCTAAACCCGCACTGGAATGAGACCTTTCTATTTGAAG tcagtttctagctccagggcaaagatctaGTTTCCTCATTGTCTCTCCAGCTTTCTCCAGGTTCTGAGGAGGATGAGGCCCATGAAGGCTGCAGCCGGGAGAACTTGGGCCGAATCCAGTTCAGTGTTGGCTATAACTTTCAAGAGTCCACGCTCACTGTGAAGGTCATGAAGGCCCAAGAGCTGCCAGCCAAGGACTTCAGTGGTACTAGTGACCCCTTTGTCAAGATTTATCTGCTACCAGATAAGAAACACAAATTGGAGACCAAAGTGAAGCGGAAGAACCTAAACCCACACTGGAATGAGACCTTTCTATTTGAAGgtaagtctggtatacccttgtggcctggacccatggaccaatctaccaat Alignment from GeneWise CTCTCCCCGGGTTCTGAGGAGGATGAGGCCCACGAGGGCTGCAGCCGAGAGAACCTGGGCCGAATCCAGTTCAGTGTTGGCTACAACTTCCAAGAGTCCACACTCACCGTGAAGGTCATGAAGGCCCAAGAGCTGCCAGCCAAGGACTTCAGCGGTACTAGTGACCCCTTTGTCAAGATCTACCTGCTACCCGACAAGAAGCACAAACTGGAGACCAAGGTGAAGCGGAAGAATCTAAACCCGCACTGGAATGAGACCTTTCTATTTGAAG tcagtttctagctccagggcaaagatctagtttcctcattgtctctccagCTTTCTCCAGGTTCTGAGGAGGATGAGGCCCATGAAGGCTGCAGCCGGGAGAACTTGGGCCGAATCCAGTTCAGTGTTGGCTATAACTTTCAAGAGTCCACGCTCACTGTGAAGGTCATGAAGGCCCAAGAGCTGCCAGCCAAGGACTTCAGTGGTACTAGTGACCCCTTTGTCAAGATTTATCTGCTACCAGATAAGAAACACAAATTGGAGACCAAAGTGAAGCGGAAGAACCTAAACCCACACTGGAATGAGACCTTTCTATTTGAAGgtaagtctggtatacccttgtggcctggacccatggaccaatctaccaat #### Syt7_ID2827_8 --> 2 - 0 Original Alignment ggTTTCCCTACGAGAAAGTGGTGCAGAGGGTCCTCTACCTCCAGGTCCTGGATTATGACCGTTTCAGCCGCAATGACCCCATTGGGGAGGTGTCCATCCCTCTGAACAAGGTGGACCTGACCCAGATGCAGACCTTCTGGAAGGATCTGAAGCCATGCAGCGATGGGAGT acctatatcgatattatctcctaacaatccctcccggtccctgtccccagggTTTCCCTATGAAAAAGTGGTGCAGAGGGTCCTTTACCTCCAAGTCCTGGATTATGACCGTTTCAGCCGCAATGACCCCATTGGGGAGGTGTCCATCCCTCTGAACAAGGTAGACCTGACCCAGATGCAGACATTCTGGAAAGATCTCAAACCATGCAGCGATGGGAGTgtagactactctggtattcacgaatgggaacagtggttgagcaacaccct Alignment from CESAR ggTTTCCCTACGAGAAAGTGGTGCAGAGGGTCCTCTACCTCCAGGTCCTGGATTATGACCGTTTCAGCCGCAATGACCCCATTGGGGAGGTGTCCATCCCTCTGAACAAGGTGGACCTGACCCAGATGCAGACCTTCTGGAAGGATCTGAAGCCATGCAGCGATGGGAGT acctatatcgatattatctcctaacaatccctcccggtccctgtccccagggTTTCCCTATGAAAAAGTGGTGCAGAGGGTCCTTTACCTCCAAGTCCTGGATTATGACCGTTTCAGCCGCAATGACCCCATTGGGGAGGTGTCCATCCCTCTGAACAAGGTAGACCTGACCCAGATGCAGACATTCTGGAAAGATCTCAAACCATGCAGCGATGGGAGTgtagactactctggtattcacgaatgggaacagtggttgagcaacaccct Alignment from Spaln_aa2Genome GGTTTCCCTACGAGAAAGTGGTGCAGAGGGTCCTCTACCTCCAGGTCCTGGATTATGACCGTTTCAGCCGCAATGACCCCATTGGGGAGGTGTCCATCCCTCTGAACAAGGTGGACCTGACCCAGATGCAGACCTTCTGGAAGGATCTGAAGCCATGCAGCGATGGGAGT acctatatcgatattatctcctaacaatccctcccggtccctgtccccagGGTTTCCCTATGAAAAAGTGGTGCAGAGGGTCCTTTACCTCCAAGTCCTGGATTATGACCGTTTCAGCCGCAATGACCCCATTGGGGAGGTGTCCATCCCTCTGAACAAGGTAGACCTGACCCAGATGCAGACATTCTGGAAAGATCTCAAACCATGCAGCGATGGGAGTgtagactactctggtattcacgaatgggaacagtggttgagcaacaccct Alignment from Spaln_nt2Genome GGTTTCCCTACGAGAAAGTGGTGCAGAGGGTCCTCTACCTCCAGGTCCTGGATTATGACCGTTTCAGCCGCAATGACCCCATTGGGGAGGTGTCCATCCCTCTGAACAAGGTGGACCTGACCCAGATGCAGACCTTCTGGAAGGATCTGAAGCCATGCAGCGATGGGAGT acctatatcgatattatctcctaacaatccctcccggtccctgtccccagGGTTTCCCTATGAAAAAGTGGTGCAGAGGGTCCTTTACCTCCAAGTCCTGGATTATGACCGTTTCAGCCGCAATGACCCCATTGGGGAGGTGTCCATCCCTCTGAACAAGGTAGACCTGACCCAGATGCAGACATTCTGGAAAGATCTCAAACCATGCAGCGATGGGAGTgtagactactctggtattcacgaatgggaacagtggttgagcaacaccct Alignment from Pairagon GGTTTCCCTACGAGAAAGTGGTGCAGAGGGTCCTCTACCTCCAGGTCCTGGATTATGACCGTTTCAGCCGCAATGACCCCATTGGGGAGGTGTCCATCCCTCTGAACAAGGTGGACCTGACCCAGATGCAGACCTTCTGGAAGGATCTGAAGCCATGCAGCGATGGGAGT acctatatcgatattatctcctaacaatccctcccggtccctgtccccagGGTTTCCCTATGAAAAAGTGGTGCAGAGGGTCCTTTACCTCCAAGTCCTGGATTATGACCGTTTCAGCCGCAATGACCCCATTGGGGAGGTGTCCATCCCTCTGAACAAGGTAGACCTGACCCAGATGCAGACATTCTGGAAAGATCTCAAACCATGCAGCGATGGGAGTgtagactactctggtattcacgaatgggaacagtggttgagcaacaccct Alignment from Exonerate_protein2genome GGTTTCCCTACGAGAAAGTGGTGCAGAGGGTCCTCTACCTCCAGGTCCTGGATTATGACCGTTTCAGCCGCAATGACCCCATTGGGGAGGTGTCCATCCCTCTGAACAAGGTGGACCTGACCCAGATGCAGACCTTCTGGAAGGATCTGAAGCCATGCAGCGATGGGAGT acctatatcgatattatctcctaacaatccctcccggtccctgtccccagGGTTTCCCTATGAAAAAGTGGTGCAGAGGGTCCTTTACCTCCAAGTCCTGGATTATGACCGTTTCAGCCGCAATGACCCCATTGGGGAGGTGTCCATCCCTCTGAACAAGGTAGACCTGACCCAGATGCAGACATTCTGGAAAGATCTCAAACCATGCAGCGATGGGAGTgtagactactctggtattcacgaatgggaacagtggttgagcaacaccct Alignment from Exonerate_coding2genome GGTTTCCCTACGAGAAAGTGGTGCAGAGGGTCCTCTACCTCCAGGTCCTGGATTATGACCGTTTCAGCCGCAATGACCCCATTGGGGAGGTGTCCATCCCTCTGAACAAGGTGGACCTGACCCAGATGCAGACCTTCTGGAAGGATCTGAAGCCATGCAGCGATGGGAGT acctatatcgatattatctcctaacaatccctcccggtccctgtccccagGGTTTCCCTATGAAAAAGTGGTGCAGAGGGTCCTTTACCTCCAAGTCCTGGATTATGACCGTTTCAGCCGCAATGACCCCATTGGGGAGGTGTCCATCCCTCTGAACAAGGTAGACCTGACCCAGATGCAGACATTCTGGAAAGATCTCAAACCATGCAGCGATGGGAGTgtagactactctggtattcacgaatgggaacagtggttgagcaacaccct Alignment from GeneWise GGTTTCCCTACGAGAAAGTGGTGCAGAGGGTCCTCTACCTCCAGGTCCTGGATTATGACCGTTTCAGCCGCAATGACCCCATTGGGGAGGTGTCCATCCCTCTGAACAAGGTGGACCTGACCCAGATGCAGACCTTCTGGAAGGATCTGAAGCCATGCAGCGATGGGAGT acctatatcgatattatctcctaacaatccctcccggtccctgtccccagGGTTTCCCTATGAAAAAGTGGTGCAGAGGGTCCTTTACCTCCAAGTCCTGGATTATGACCGTTTCAGCCGCAATGACCCCATTGGGGAGGTGTCCATCCCTCTGAACAAGGTAGACCTGACCCAGATGCAGACATTCTGGAAAGATCTCAAACCATGCAGCGATGGGAGTgtagactactctggtattcacgaatgggaacagtggttgagcaacaccct #### Syvn1_ID1384_3 --> 0 - 0 Original Alignment CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT attgccatgctggctgtcttgcagcttcatgcccatgcctgccccgtcagCACCTGCTGGAACAGTCTTGGTATGCTGTCACAGAAATCTGTTTGACCTTTACAGTTATTGGCGATGACTCAAGTCCCCAATTTGTGGCACTCTTCATGCTTCTTCTCTTCCTCAAGTGCTTCCAGTGGTTAGCTGCAGATCATGTTGATTCTgtaagttcaaatctcctgatgaatatgcaggtgctcttgtagtttcacag Alignment from CESAR CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT attgccatgctggctgtcttgcagcttcatgcccatgcctgccccgtcagCACCTGCTGGAACAGTCTTGGTATGCTGTCACAGAAATCTGTTTGACCTTTACAGTTATTGGCGATGACTCAAGTCCCCAATTTGTGGCACTCTTCATGCTTCTTCTCTTCCTCAAGTGCTTCCAGTGGTTAGCTGCAGATCATGTTGATTCTgtaagttcaaatctcctgatgaatatgcaggtgctcttgtagtttcacag Alignment from Spaln_aa2Genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT attgccatgctggctgtcttgcagcttcatgcccatgcctgccccgtcagCACCTGCTGGAACAGTCTTGGTATGCTGTCACAGAAATCTGTTTGACCTTTACAGTTATTGGCGATGACTCAAGTCCCCAATTTGTGGCACTCTTCATGCTTCTTCTCTTCCTCAAGTGCTTCCAGTGGTTAGCTGCAGATCATGTTGATTCTgtaagttcaaatctcctgatgaatatgcaggtgctcttgtagtttcacag Alignment from Spaln_nt2Genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT attgccatgctggctgtcttgcagcttcatgcccatgcctgccccgtcagCACCTGCTGGAACAGTCTTGGTATGCTGTCACAGAAATCTGTTTGACCTTTACAGTTATTGGCGATGACTCAAGTCCCCAATTTGTGGCACTCTTCATGCTTCTTCTCTTCCTCAAGTGCTTCCAGTGGTTAGCTGCAGATCATGTTGATTCTgtaagttcaaatctcctgatgaatatgcaggtgctcttgtagtttcacag Alignment from Pairagon CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT attgccatgctggctgtcttgcagcttcatgcccatgcctgccccgtcagCACCTGCTGGAACAGTCTTGGTATGCTGTCACAGAAATCTGTTTGACCTTTACAGTTATTGGCGATGACTCAAGTCCCCAATTTGTGGCACTCTTCATGCTTCTTCTCTTCCTCAAGTGCTTCCAGTGGTTAGCTGCAGATCATGTTGATTCTgtaagttcaaatctcctgatgaatatgcaggtgctcttgtagtttcacag Alignment from Exonerate_protein2genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT attgccatgctggctgtcttgcagcttcatgcccatgcctgccccgtcagCACCTGCTGGAACAGTCTTGGTATGCTGTCACAGAAATCTGTTTGACCTTTACAGTTATTGGCGATGACTCAAGTCCCCAATTTGTGGCACTCTTCATGCTTCTTCTCTTCCTCAAGTGCTTCCAGTGGTTAGCTGCAGATCATGTTGATTCTgtaagttcaaatctcctgatgaatatgcaggtgctcttgtagtttcacag Alignment from Exonerate_coding2genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT attgccatgctggctgtcttgcagcttcatgcccatgcctgccccgtcagCACCTGCTGGAACAGTCTTGGTATGCTGTCACAGAAATCTGTTTGACCTTTACAGTTATTGGCGATGACTCAAGTCCCCAATTTGTGGCACTCTTCATGCTTCTTCTCTTCCTCAAGTGCTTCCAGTGGTTAGCTGCAGATCATGTTGATTCTgtaagttcaaatctcctgatgaatatgcaggtgctcttgtagtttcacag Alignment from GeneWise CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT attgccatgctggctgtcttgcagcttcatgcccatgcctgccccgtcagCACCTGCTGGAACAGTCTTGGTATGCTGTCACAGAAATCTGTTTGACCTTTACAGTTATTGGCGATGACTCAAGTCCCCAATTTGTGGCACTCTTCATGCTTCTTCTCTTCCTCAAGTGCTTCCAGTGGTTAGCTGCAGATCATGTTGATTCTgtaagttcaaatctcctgatgaatatgcaggtgctcttgtagtttcacag #### Syvn1_ID1390_9 --> 1 - 2 Original Alignment gTACCCAGATGCCACCCCCGAGGAGCTCCAGGCAATGGATAATGTCTGCATCATCTGCAGAGAAGAAATGGTGACTGGTGCTAAGAGATTGCCTTGCAACCACATCTTTCACACGag gaccataggacaagcccaaaaagaaagcttaaatattttttttattacaggTACCCAGATGCCACCCCCAAGGAACTCCAGGCAATGGATAATGTCTGTATAATTTGCAGAGAGGAAATGGTGACTGGTGCTAAGAGACTGCCTTGCAACCACATCTTTCACATGaggtgagtagtgctccacgacagtccaacaataagctacggaccaaaatcgt Alignment from CESAR gTACCCAGATGCCACCCCCGAGGAGCTCCAGGCAATGGATAATGTCTGCATCATCTGCAGAGAAGAAATGGTGACTGGTGCTAAGAGATTGCCTTGCAACCACATCTTTCACACGag gaccataggacaagcccaaaaagaaagcttaaatattttttttattacaggTACCCAGATGCCACCCCCAAGGAACTCCAGGCAATGGATAATGTCTGTATAATTTGCAGAGAGGAAATGGTGACTGGTGCTAAGAGACTGCCTTGCAACCACATCTTTCACATGaggtgagtagtgctccacgacagtccaacaataagctacggacttatcttgt Alignment from Spaln_aa2Genome GTACCCAGATGCCACCCCCGAGGAGCTCCAGGCAATGGATAATGTCTGCATCATCTGCAGAGAAGAAATGGTGACTGGTGCTAAGAGATTGCCTTGCAACCACATCTTTCACACGAG gaccataggacaagcccaaaaagaaagcttaaatattttttttattacagGTACCCAGATGCCACCCCCAAGGAACTCCAGGCAATGGATAATGTCTGTATAATTTGCAGAGAGGAAATGGTGACTGGTGCTAAGAGACTGCCTTGCAACCACATCTTTCACATGAGgtgagtagtgctccacgacagtccaacaataagctacggaccaaaatcgt Alignment from Spaln_nt2Genome GTACCCAGATGCCACCCCCGAGGAGCTCCAGGCAATGGATAATGTCTGCATCATCTGCAGAGAAGAAATGGTGACTGGTGCTAAGAGATTGCCTTGCAACCACATCTTTCACACGAG gaccataggacaagcccaaaaagaaagcttaaatattttttttattacagGTACCCAGATGCCACCCCCAAGGAACTCCAGGCAATGGATAATGTCTGTATAATTTGCAGAGAGGAAATGGTGACTGGTGCTAAGAGACTGCCTTGCAACCACATCTTTCACATGAGgtgagtagtgctccacgacagtccaacaataagctacggaccaaaatcgt Alignment from Pairagon GTACCCAGATGCCACCCCCGAGGAGCTCCAGGCAATGGATAATGTCTGCATCATCTGCAGAGAAGAAATGGTGACTGGTGCTAAGAGATTGCCTTGCAACCACATCTTTCACACGAG gaccataggacaagcccaaaaagaaagcttaaatattttttttattacagGTACCCAGATGCCACCCCCAAGGAACTCCAGGCAATGGATAATGTCTGTATAATTTGCAGAGAGGAAATGGTGACTGGTGCTAAGAGACTGCCTTGCAACCACATCTTTCACATGAGgtgagtagtgctccacgacagtccaacaataagctacggaccaaaatcgt Alignment from Exonerate_protein2genome GTACCCAGATGCCACCCCCGAGGAGCTCCAGGCAATGGATAATGTCTGCATCATCTGCAGAGAAGAAATGGTGACTGGTGCTAAGAGATTGCCTTGCAACCACATCTTTCACACGAG gaccataggacaagcccaaaaagaaagcttaaatattttttttattacagGTACCCAGATGCCACCCCCAAGGAACTCCAGGCAATGGATAATGTCTGTATAATTTGCAGAGAGGAAATGGTGACTGGTGCTAAGAGACTGCCTTGCAACCACATCTTTCACATGAGgtgagtagtgctccacgacagtccaacaataagctacggaccaaaatcgt Alignment from Exonerate_coding2genome GTACCCAGATGCCACCCCCGAGGAGCTCCAGGCAATGGATAATGTCTGCATCATCTGCAGAGAAGAAATGGTGACTGGTGCTAAGAGATTGCCTTGCAACCACATCTTTCACACGAG gaccataggacaagcccaaaaagaaagcttaaatattttttttattacagGTACCCAGATGCCACCCCCAAGGAACTCCAGGCAATGGATAATGTCTGTATAATTTGCAGAGAGGAAATGGTGACTGGTGCTAAGAGACTGCCTTGCAACCACATCTTTCACATGAGgtgagtagtgctccacgacagtccaacaataagctacggaccaaaatcgt Alignment from GeneWise GTACCCAGATGCCACCCCCGAGGAGCTCCAGGCAATGGATAATGTCTGCATCATCTGCAGAGAAGAAATGGTGACTGGTGCTAAGAGATTGCCTTGCAACCACATCTTTCACACGAG gaccataggacaagcccaaaaagaaagcttaaatattttttttattacagGTACCCAGATGCCACCCCCAAGGAACTCCAGGCAATGGATAATGTCTGTATAATTTGCAGAGAGGAAATGGTGACTGGTGCTAAGAGACTGCCTTGCAACCACATCTTTCACATGAGgtgagtagtgctccacgacagtccaacaataagctacggaccaaaatcgt #### Syvn1_ID1391_10 --> 1 - 1 Original Alignment cTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATt cacgacagtccaacaataagctacggacttatcttgtcttcttggtacagcTGCTTGCACTCCTGGTTCCATAGACAGCAGACCTGTCTGACATGTCATATGGATGTTTTGCGGGCATCACTGCCAGCCCAGCTGCCACCTCCTTCCGAGCCTGCTGAGCAAGGACCCCCCCCAGCACCTCAGTCCCAACCGCTCCTGCCA---CCGCCGAATagtaagggctgtctcatagtatagggccaatggacaagagacttttgacta Alignment from CESAR cTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATt cacgacagtccaacaataagctacggacttatcttgtcttcttggtacagcTGCTTGCACTCCTGGTTCCATAGACAGCAGACCTGTCTGACATGTCATATGGATGTTTTGCGGGCATCACTGCCAGCCCAGCTGCCACCTCCTTCCGAGCCTGCTGAGCAAGGACCCCCCCCAGCACCTCAGTCCCAACCGCTCCTGCCA---CCGCCGAATagtaagggctgtctcatagtatagggccaatggacaagagacttttgacta Alignment from Spaln_aa2Genome CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT cacgacagtccaacaataagctacggacttatcttgtcttcttggtacagCTGCTTGCACTCCTGGTTCCATAGACAGCAGACCTGTCTGACATGTCATATGGATGTTTTGCGGGCATCACTGCCAGCCCAGCTGCCACCTCCTTCCGAGCCTGCTGAGCAAGGACCCCCCCCAGCACCTCAGTCCCAACCGCTCCTGCCA---CCGCCGAATAgtaagggctgtctcatagtatagggccaatggacaagagacttttgacta Alignment from Spaln_nt2Genome CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTA cacgacagtccaacaataagctacggacttatcttgtcttcttggtacagCTGCTTGCACTCCTGGTTCCATAGACAGCAGACCTGTCTGACATGTCATATGGATGTTTTGCGGGCATCACTGCCAGCCCAGCTGCCACCTCCTTCCGAGCCTGCTGAGCAAGGACCCCCCCCAGCACCTCAGTCCCAACCGCTCCTGCCACCGCCGAATAgtaagggctgtctcatagtatagggccaatggacaagagacttttgacta Alignment from Pairagon CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT cacgacagtccaacaataagctacggacttatcttgtcttcttggtacagCTGCTTGCACTCCTGGTTCCATAGACAGCAGACCTGTCTGACATGTCATATGGATGTTTTGCGGGCATCACTGCCAGCCCAGCTGCCACCTCCTTCCGAGCCTGCTGAGCAAGGACCCCCCCCAGCACCTCAGTCCCAACCGCTCCTGCCACCGCCG---AATAgtaagggctgtctcatagtatagggccaatggacaagagacttttgacta Alignment from Exonerate_protein2genome CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT cacgacagtccaacaataagctacggacttatcttgtcttcttggtacagCTGCTTGCACTCCTGGTTCCATAGACAGCAGACCTGTCTGACATGTCATATGGATGTTTTGCGGGCATCACTGCCAGCCCAGCTGCCACCTCCTTCCGAGCCTGCTGAGCAAGGACCCCCCCCAGCACCTCAGTCCCAACCGCTCCTGCCA---CCGCCGAATAgtaagggctgtctcatagtatagggccaatggacaagagacttttgacta Alignment from Exonerate_coding2genome CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT cacgacagtccaacaataagctacggacttatcttgtcttcttggtacagCTGCTTGCACTCCTGGTTCCATAGACAGCAGACCTGTCTGACATGTCATATGGATGTTTTGCGGGCATCACTGCCAGCCCAGCTGCCACCTCCTTCCGAGCCTGCTGAGCAAGGACCCCCCCCAGCACCTCAGTCCCAACCGCTCCTGCCA---CCGCCGAATAgtaagggctgtctcatagtatagggccaatggacaagagacttttgacta Alignment from GeneWise CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT cacgacagtccaacaataagctacggacttatcttgtcttcttggtacagCTGCTTGCACTCCTGGTTCCATAGACAGCAGACCTGTCTGACATGTCATATGGATGTTTTGCGGGCATCACTGCCAGCCCAGCTGCCACCTCCTTCCGAGCCTGCTGAGCAAGGACCCCCCCCAGCACCTCAGTCCCAACCGCTCCTGCCA---CCGCCGAATAgtaagggctgtctcatagtatagggccaatggacaagagacttttgacta #### Taf5_ID10098_6 --> 0 - 1 Original Alignment GGCCTCACTGCAGTGGATGTCACTGATGACTCTAGTCTGATTGCTGGAGGTTTTGCTGATTCAACTGTCAGAGTGTGGTCTGTGACCCCTAAAAAGCTTCGTAGTGTCAAACAAGCATCAg accccctgaccctaagacattttctggggctatgctttttttcctgaaagGGCCTCACGGCAGTGCATGTCACTGATGACTATAGTCTTATTGCTAGGGGTTTTGCCGAATCAACTGTGAGAGTATGGTCTGTGACCCCTGATAAGCTTCGTAGTGTTAAGCAAGCATTAggtgagtgcgttggaattaccagatgaatttaaaaagacacaatgggttaa Alignment from CESAR GGCCTCACTGCAGTGGATGTCACTGATGACTCTAGTCTGATTGCTGGAGGTTTTGCTGATTCAACTGTCAGAGTGTGGTCTGTGACCCCTAAAAAGCTTCGTAGTGTCAAACAAGCATCAg accccctgaccctaagacattttctggggctatgctttttttcctgaaagGGCCTCACGGCAGTGCATGTCACTGATGACTATAGTCTTATTGCTAGGGGTTTTGCCGAATCAACTGTGAGAGTATGGTCTGTGACCCCTGATAAGCTTCGTAGTGTTAAGCAAGCATTAggtgagtgcgttggaattaccagatgaatttaaaaagacacaatgggttaa Alignment from Spaln_aa2Genome GGCCTCACTGCAGTGGATGTCACTGATGACTCTAGTCTGATTGCTGGAGGTTTTGCTGATTCAACTGTCAGAGTGTGGTCTGTGACCCCTAAAAAGCTTCGTAGTGTCAAACAAGCATCAG accccctgaccctaagacattttctggggctatgctttttttcctgaaagGGCCTCACGGCAGTGCATGTCACTGATGACTATAGTCTTATTGCTAGGGGTTTTGCCGAATCAACTGTGAGAGTATGGTCTGTGACCCCTGATAAGCTTCGTAGTGTTAAGCAAGCATTAGgtgagtgcgttggaattaccagatgaatttaaaaagacacaatgggttaa Alignment from Spaln_nt2Genome GGCCTCACTGCAGTGGATGTCACTGATGACTCTAGTCTGATTGCTGGAGGTTTTGCTGATTCAACTGTCAGAGTGTGGTCTGTGACCCCTAAAAAGCTTCGTAGTGTCAAACAAGCATCAG accccctgaccctaagacattttctggggctatgctttttttcctgaaagGGCCTCACGGCAGTGCATGTCACTGATGACTATAGTCTTATTGCTAGGGGTTTTGCCGAATCAACTGTGAGAGTATGGTCTGTGACCCCTGATAAGCTTCGTAGTGTTAAGCAAGCATTAGgtgagtgcgttggaattaccagatgaatttaaaaagacacaatgggttaa Alignment from Pairagon GGCCTCACTGCAGTGGATGTCACTGATGACTCTAGTCTGATTGCTGGAGGTTTTGCTGATTCAACTGTCAGAGTGTGGTCTGTGACCCCTAAAAAGCTTCGTAGTGTCAAACAAGCATCAG accccctgaccctaagacattttctggggctatgctttttttcctgaaagGGCCTCACGGCAGTGCATGTCACTGATGACTATAGTCTTATTGCTAGGGGTTTTGCCGAATCAACTGTGAGAGTATGGTCTGTGACCCCTGATAAGCTTCGTAGTGTTAAGCAAGCATTAGgtgagtgcgttggaattaccagatgaatttaaaaagacacaatgggttaa Alignment from Exonerate_protein2genome GGCCTCACTGCAGTGGATGTCACTGATGACTCTAGTCTGATTGCTGGAGGTTTTGCTGATTCAACTGTCAGAGTGTGGTCTGTGACCCCTAAAAAGCTTCGTAGTGTCAAACAAGCATCAG accccctgaccctaagacattttctggggctatgctttttttcctgaaagGGCCTCACGGCAGTGCATGTCACTGATGACTATAGTCTTATTGCTAGGGGTTTTGCCGAATCAACTGTGAGAGTATGGTCTGTGACCCCTGATAAGCTTCGTAGTGTTAAGCAAGCATTAGgtgagtgcgttggaattaccagatgaatttaaaaagacacaatgggttaa Alignment from Exonerate_coding2genome GGCCTCACTGCAGTGGATGTCACTGATGACTCTAGTCTGATTGCTGGAGGTTTTGCTGATTCAACTGTCAGAGTGTGGTCTGTGACCCCTAAAAAGCTTCGTAGTGTCAAACAAGCATCAG accccctgaccctaagacattttctggggctatgctttttttcctgaaagGGCCTCACGGCAGTGCATGTCACTGATGACTATAGTCTTATTGCTAGGGGTTTTGCCGAATCAACTGTGAGAGTATGGTCTGTGACCCCTGATAAGCTTCGTAGTGTTAAGCAAGCATTAGgtgagtgcgttggaattaccagatgaatttaaaaagacacaatgggttaa Alignment from GeneWise GGCCTCACTGCAGTGGATGTCACTGATGACTCTAGTCTGATTGCTGGAGGTTTTGCTGATTCAACTGTCAGAGTGTGGTCTGTGACCCCTAAAAAGCTTCGTAGTGTCAAACAAGCATCAG accccctgaccctaagacattttctggggctatgctttttttcctgaaagGGCCTCACGGCAGTGCATGTCACTGATGACTATAGTCTTATTGCTAGGGGTTTTGCCGAATCAACTGTGAGAGTATGGTCTGTGACCCCTGATAAGCTTCGTAGTGTTAAGCAAGCATTAGgtgagtgcgttggaattaccagatgaatttaaaaagacacaatgggttaa #### Taf5_ID10099_7 --> 2 - 2 Original Alignment atCTTAGTCTTATAGACAAAGAATCAGATGATGTCTTAGAGAGAATCATGGATGAGAAAACTGCAAGTGAGTTGAAGATTTTGTATGGTCACAGTGGGCCTGTCTATGGAGCCAGCTTCAGTCCGGATag atcatgacctaagggtaacgtctttcacccactctctatcctctctccagatCTTAGCCTTATTGATAAAGAATCAGATGATGTATTAGAGAGAATGATGGATGAGAAAACTGCAAGTGAGTTGAAAATCCTGTATGGTCACAGTGGGCCACTCTATGGAGCCAGCTTCAGTCCAGACaggtgagttctaaacaaatccaggtaaaattatatatgctgctggcagtact Alignment from CESAR atCTTAGTCTTATAGACAAAGAATCAGATGATGTCTTAGAGAGAATCATGGATGAGAAAACTGCAAGTGAGTTGAAGATTTTGTATGGTCACAGTGGGCCTGTCTATGGAGCCAGCTTCAGTCCGGATag atcatgacctaagggtaacgtctttcacccactctctatcctctctccagatCTTAGCCTTATTGATAAAGAATCAGATGATGTATTAGAGAGAATGATGGATGAGAAAACTGCAAGTGAGTTGAAAATCCTGTATGGTCACAGTGGGCCACTCTATGGAGCCAGCTTCAGTCCAGACaggtgagttctaaacaaatccaggtaaaattatatatgctgctggcagtact Alignment from Spaln_aa2Genome ATCTTAGTCTTATAGACAAAGAATCAGATGATGTCTTAGAGAGAATCATGGATGAGAAAACTGCAAGTGAGTTGAAGATTTTGTATGGTCACAGTGGGCCTGTCTATGGAGCCAGCTTCAGTCCGGATAG atcatgacctaagggtaacgtctttcacccactctctatcctctctccagATCTTAGCCTTATTGATAAAGAATCAGATGATGTATTAGAGAGAATGATGGATGAGAAAACTGCAAGTGAGTTGAAAATCCTGTATGGTCACAGTGGGCCACTCTATGGAGCCAGCTTCAGTCCAGACAGgtgagttctaaacaaatccaggtaaaattatatatgctgctggcagtact Alignment from Spaln_nt2Genome ATCTTAGTCTTATAGACAAAGAATCAGATGATGTCTTAGAGAGAATCATGGATGAGAAAACTGCAAGTGAGTTGAAGATTTTGTATGGTCACAGTGGGCCTGTCTATGGAGCCAGCTTCAGTCCGGATAG atcatgacctaagggtaacgtctttcacccactctctatcctctctccagATCTTAGCCTTATTGATAAAGAATCAGATGATGTATTAGAGAGAATGATGGATGAGAAAACTGCAAGTGAGTTGAAAATCCTGTATGGTCACAGTGGGCCACTCTATGGAGCCAGCTTCAGTCCAGACAGgtgagttctaaacaaatccaggtaaaattatatatgctgctggcagtact Alignment from Pairagon ATCTTAGTCTTATAGACAAAGAATCAGATGATGTCTTAGAGAGAATCATGGATGAGAAAACTGCAAGTGAGTTGAAGATTTTGTATGGTCACAGTGGGCCTGTCTATGGAGCCAGCTTCAGTCCGGATAG atcatgacctaagggtaacgtctttcacccactctctatcctctctccagATCTTAGCCTTATTGATAAAGAATCAGATGATGTATTAGAGAGAATGATGGATGAGAAAACTGCAAGTGAGTTGAAAATCCTGTATGGTCACAGTGGGCCACTCTATGGAGCCAGCTTCAGTCCAGACAGgtgagttctaaacaaatccaggtaaaattatatatgctgctggcagtact Alignment from Exonerate_protein2genome ATCTTAGTCTTATAGACAAAGAATCAGATGATGTCTTAGAGAGAATCATGGATGAGAAAACTGCAAGTGAGTTGAAGATTTTGTATGGTCACAGTGGGCCTGTCTATGGAGCCAGCTTCAGTCCGGATAG atcatgacctaagggtaacgtctttcacccactctctatcctctctccagATCTTAGCCTTATTGATAAAGAATCAGATGATGTATTAGAGAGAATGATGGATGAGAAAACTGCAAGTGAGTTGAAAATCCTGTATGGTCACAGTGGGCCACTCTATGGAGCCAGCTTCAGTCCAGACAGgtgagttctaaacaaatccaggtaaaattatatatgctgctggcagtact Alignment from Exonerate_coding2genome ATCTTAGTCTTATAGACAAAGAATCAGATGATGTCTTAGAGAGAATCATGGATGAGAAAACTGCAAGTGAGTTGAAGATTTTGTATGGTCACAGTGGGCCTGTCTATGGAGCCAGCTTCAGTCCGGATAG atcatgacctaagggtaacgtctttcacccactctctatcctctctccagATCTTAGCCTTATTGATAAAGAATCAGATGATGTATTAGAGAGAATGATGGATGAGAAAACTGCAAGTGAGTTGAAAATCCTGTATGGTCACAGTGGGCCACTCTATGGAGCCAGCTTCAGTCCAGACAGgtgagttctaaacaaatccaggtaaaattatatatgctgctggcagtact Alignment from GeneWise ATCTTAGTCTTATAGACAAAGAATCAGATGATGTCTTAGAGAGAATCATGGATGAGAAAACTGCAAGTGAGTTGAAGATTTTGTATGGTCACAGTGGGCCTGTCTATGGAGCCAGCTTCAGTCCGGATAG atcatgacctaagggtaacgtctttcacccactctctatcctctctccagATCTTAGCCTTATTGATAAAGAATCAGATGATGTATTAGAGAGAATGATGGATGAGAAAACTGCAAGTGAGTTGAAAATCCTGTATGGTCACAGTGGGCCACTCTATGGAGCCAGCTTCAGTCCAGACAGgtgagttctaaacaaatccaggtaaaattatatatgctgctggcagtact #### Tbc1d12_ID7679_2 --> 1 - 0 Original Alignment aAACCTTTTCCCAAAAAGGACAAAGGAACTCAAATCAGTTGTCCATAGTGCTCCTGGCTGGAAGTTATTTGGTAAAGTCCCTCCCAGAGAAAATCTTCAGAAAACCTCCAAAATTATTCAGCAG gaggaaaattctgctctacacacccagcgtccatctgtcttcacatacagaAACCTTTTCCCAAAAAGGACAAAGGAACTCAAATCAGTTGTGCATAGTGCTCCTGGCTGGAAGTTATTTGGTAAAGTCACCCCCAGAGAAAACCTTCAGAAAACCTCTAAAATTATTCAGCAGgtaagtaacacactatcacacatagccctagccagtccacttgatcatct Alignment from CESAR aAACCTTTTCCCAAAAAGGACAAAGGAACTCAAATCAGTTGTCCATAGTGCTCCTGGCTGGAAGTTATTTGGTAAAGTCCCTCCCAGAGAAAATCTTCAGAAAACCTCCAAAATTATTCAGCAG gaggaaaattctgctctacacacccagcgtccatctgtcttcacatacagaAACCTTTTCCCAAAAAGGACAAAGGAACTCAAATCAGTTGTGCATAGTGCTCCTGGCTGGAAGTTATTTGGTAAAGTCACCCCCAGAGAAAACCTTCAGAAAACCTCTAAAATTATTCAGCAGgtaagtaacacactatcacacatagccctagccagtccacttgatcatct Alignment from Spaln_aa2Genome AAACCTTTTCCCAAAAAGGACAAAGGAACTCAAATCAGTTGTCCATAGTGCTCCTGGCTGGAAGTTATTTGGTAAAGTCCCTCCCAGAGAAAATCTTCAGAAAACCTCCAAAATTATTCAGCAG gaggaaaattctgctctacacacccagcgtccatctgtcttcacatacagAAACCTTTTCCCAAAAAGGACAAAGGAACTCAAATCAGTTGTGCATAGTGCTCCTGGCTGGAAGTTATTTGGTAAAGTCACCCCCAGAGAAAACCTTCAGAAAACCTCTAAAATTATTCAGCAGgtaagtaacacactatcacacatagccctagccagtccacttgatcatct Alignment from Spaln_nt2Genome AAACCTTTTCCCAAAAAGGACAAAGGAACTCAAATCAGTTGTCCATAGTGCTCCTGGCTGGAAGTTATTTGGTAAAGTCCCTCCCAGAGAAAATCTTCAGAAAACCTCCAAAATTATTCAGCAG gaggaaaattctgctctacacacccagcgtccatctgtcttcacatacagAAACCTTTTCCCAAAAAGGACAAAGGAACTCAAATCAGTTGTGCATAGTGCTCCTGGCTGGAAGTTATTTGGTAAAGTCACCCCCAGAGAAAACCTTCAGAAAACCTCTAAAATTATTCAGCAGgtaagtaacacactatcacacatagccctagccagtccacttgatcatct Alignment from Pairagon AAACCTTTTCCCAAAAAGGACAAAGGAACTCAAATCAGTTGTCCATAGTGCTCCTGGCTGGAAGTTATTTGGTAAAGTCCCTCCCAGAGAAAATCTTCAGAAAACCTCCAAAATTATTCAGCAG gaggaaaattctgctctacacacccagcgtccatctgtcttcacatacagAAACCTTTTCCCAAAAAGGACAAAGGAACTCAAATCAGTTGTGCATAGTGCTCCTGGCTGGAAGTTATTTGGTAAAGTCACCCCCAGAGAAAACCTTCAGAAAACCTCTAAAATTATTCAGCAGgtaagtaacacactatcacacatagccctagccagtccacttgatcatct Alignment from Exonerate_protein2genome AAACCTTTTCCCAAAAAGGACAAAGGAACTCAAATCAGTTGTCCATAGTGCTCCTGGCTGGAAGTTATTTGGTAAAGTCCCTCCCAGAGAAAATCTTCAGAAAACCTCCAAAATTATTCAGCAG gaggaaaattctgctctacacacccagcgtccatctgtcttcacatacagAAACCTTTTCCCAAAAAGGACAAAGGAACTCAAATCAGTTGTGCATAGTGCTCCTGGCTGGAAGTTATTTGGTAAAGTCACCCCCAGAGAAAACCTTCAGAAAACCTCTAAAATTATTCAGCAGgtaagtaacacactatcacacatagccctagccagtccacttgatcatct Alignment from Exonerate_coding2genome TTCTTCGCCAGAAACCTTTTCCCAAAAAGGACAAAGGAACTCAAATCAGTTGTCCATAGTGCTCCTGGCTGGAAGTTATTTGGTAAAGTCCCTCCCAGAGAAAATCTTCAGAAAACCTCCAAAATTATTCAGCAG gaggaaaattctgctctacacacccagcgtccatctgtcTTCACATACAGAAACCTTTTCCCAAAAAGGACAAAGGAACTCAAATCAGTTGTGCATAGTGCTCCTGGCTGGAAGTTATTTGGTAAAGTCACCCCCAGAGAAAACCTTCAGAAAACCTCTAAAATTATTCAGCAGgtaagtaacacactatcacacatagccctagccagtccacttgatcatct Alignment from GeneWise AAACCTTTTCCCAAAAAGGACAAAGGAACTCAAATCAGTTGTCCATAGTGCTCCTGGCTGGAAGTTATTTGGTAAAGTCCCTCCCAGAGAAAATCTTCAGAAAACCTCCAAAATTATTCAGCAG gaggaaaattctgctctacacacccagcgtccatctgtcttcacatacagAAACCTTTTCCCAAAAAGGACAAAGGAACTCAAATCAGTTGTGCATAGTGCTCCTGGCTGGAAGTTATTTGGTAAAGTCACCCCCAGAGAAAACCTTCAGAAAACCTCTAAAATTATTCAGCAGgtaagtaacacactatcacacatagccctagccagtccacttgatcatct #### Tbc1d12_ID7680_3 --> 0 - 2 Original Alignment GAGTACGAAGCTCGCACAGGGAGGACCTGTAAAGCAGCCCCCCAGTCTTCACGACGCAAGAGCTTTGCGCTGGAGCCACTTTCTACCACTGCCCTGATTCTGGAGGACCGACCAcc atcctaagggtaaacctttgtatcaaatgaccattctcctctgtgtgaagGAGTATGAAACTCACACAGGAAAGACATGTAAAGCTGCCCCCCATTCTTCACGACGGCAGAGCTTTGCATTGGAGCCACTTTCTACAACGGCACTAATTTTG------GGATCTccgtaagtacaccttaaaatcctgtaccagtgtgatggggcttatagaaagg Alignment from CESAR GAGTACGAAGCTCGCACAGGGAGGACCTGTAAAGCAGCCCCCCAGTCTTCACGACGCAAGAGCTTTGCGCTGGAGCCACTTTCTACCACTGCCCTGATTCTGGAGGACCGACCAcc atcctaagggtaaacctttgtatcaaatgaccattctcctctgtgtgaagGAGTATGAAACTCACACAGGAAAGACATGTAAAGCTGCCCCCCATTCTTCACGACGGCAGAGCTTTGCATTGGAGCCACTTTCTACAACGGCACTAATTTTGGGA------TCTccgtaagtacaccttaaaatcctgtaccagtgtgatggggcttatagaaagg Alignment from Spaln_aa2Genome GAGTACGAAGCTCGCACAGGGAGGACCTGTAAAGCAGCCCCCCAGTCTTCACGACGCAAGAGCTTTGCGCTGGAGCCACTTTCTACCACTGCCCTGATTCTGGAGGACCGACCACC atcctaagggtaaacctttgtatcaaatgaccattctcctctgtgtgaagGAGTATGAAACTCACACAGGAAAGACATGTAAAGCTGCCCCCCATTCTTCACGACGGCAGAGCTTTGCATTGGAGCCACTTTCTACAACGGCACTAATTTTGGGA------TCTCCgtaagtacaccttaaaatcctgtaccagtgtgatggggcttatagaaagg Alignment from Spaln_nt2Genome GAGTACGAAGCTCGCACAGGGAGGACCTGTAAAGCAGCCCCCCAGTCTTCACGACGCAAGAGCTTTGCGCTGGAGCCACTTTCTACCACTGCCCTGATTCTGGAGGACCGACCACC atcctaagggtaaacctttgtatcaaatgaccattctcctctgtgtgaagGAGTATGAAACTCACACAGGAAAGACATGTAAAGCTGCCCCCCATTCTTCACGACGGCAGAGCTTTGCATTGGAGCCACTTTCTACAACGGCACTAATTTTGG------GATCTCCgtaagtacaccttaaaatcctgtaccagtgtgatggggcttatagaaagg Alignment from Pairagon GAGTACGAAGCTCGCACAGGGAGGACCTGTAAAGCAGCCCCCCAGTCTTCACGACGCAAGAGCTTTGCGCTGGAGCCACTTTCTACCACTGCCCTGATTCTGGAGGACCGACCACC atcctaagggtaaacctttgtatcaaatgaccattctcctctgtgtgaagGAGTATGAAACTCACACAGGAAAGACATGTAAAGCTGCCCCCCATTCTTCACGACGGCAGAGCTTTGCATTGGAGCCACTTTCTACAACGGCACTAATTTTGG------GATCTCCgtaagtacaccttaaaatcctgtaccagtgtgatggggcttatagaaagg Alignment from Exonerate_protein2genome GAGTACGAAGCTCGCACAGGGAGGACCTGTAAAGCAGCCCCCCAGTCTTCACGACGCAAGAGCTTTGCGCTGGAGCCACTTTCTACCACTGCCCTGATTCTGGAGGACCG atcctaagggtaaacctttgtatcaaatgaccattctcctctgtgtgaagGAGTATGAAACTCACACAGGAAAGACATGTAAAGCTGCCCCCCATTCTTCACGACGGCAGAGCTTTGCATTGGAGCCACTTTCTACAACGGCACTAATTTTGGGATCTCCgtaagtacaccttaaaatcctgtaccagtgtgatggggcttatagaaagg Alignment from Exonerate_coding2genome GAGTACGAAGCTCGCACAGGGAGGACCTGTAAAGCAGCCCCCCAGTCTTCACGACGCAAGAGCTTTGCGCTGGAGCCACTTTCTACCACTGCCCTGATTCTGGAGGACCG atcctaagggtaaacctttgtatcaaatgaccattctcctctgtgtgaagGAGTATGAAACTCACACAGGAAAGACATGTAAAGCTGCCCCCCATTCTTCACGACGGCAGAGCTTTGCATTGGAGCCACTTTCTACAACGGCACTAATTTTGGGATCTCCgtaagtacaccttaaaatcctgtaccagtgtgatggggcttatagaaagg Alignment from GeneWise GAGTACGAAGCTCGCACAGGGAGGACCTGTAAAGCAGCCCCCCAGTCTTCACGACGCAAGAGCTTTGCGCTGGAGCCACTTTCTACCACTGCCCTGATTCTGGAGGAC-- atcctaagggtaaacctttgtatcaaatgaccattctcctctgtgtgaagGAGTATGAAACTCACACAGGAAAGACATGTAAAGCTGCCCCCCATTCTTCACGACGGCAGAGCTTTGCATTGGAGCCACTTTCTACAACGGCACTAATTTTGGGATCTCCgtaagtacaccttaaaatcctgtaccagtgtgatggggcttatagaaagg #### Tcirg1_ID180_7 --> 1 - 0 Original Alignment cTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCTGG tgccaatattcctgaattcaagactcgatctgtgttcttgcccctgttagcTTTCACTGCCATGTCTTCTCATATCTGGAACAGGAGGAAGCCCGGTTTAGGACCTCAAAGCAGTTACAGCAGCAGAGTCAGGAACTCCAAGAGgtgagttgttcatcacagatgctctcaccttgcaccctcgcagGTCCTAG Alignment from CESAR cTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCTGG tgccaatattcctgaattcaagactcgatctgtgttcttgcccctgttagcTTTCACTGCCATGTCTTCTCATATCTGGAACAGGAGGAAGCCCGGTTTAGGACCTCAAAGCAGTTACAGCAGCAGAGTCAGGAACTCCAAGAGgtgagttgttcatcacagatgaaatctcttgccctgatttcagGTCCTAG Alignment from Spaln_aa2Genome CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCTGG tgccaatattcctgaattcaagactcgatctgtgttcttgcccctgttagCTTTCACTGCCATGTCTTCTCATATCTGGAACAGGAGGAAGCCCGGTTTAGGACCTCAAAGCAGTTACAGCAGCAGAGTCAGGAACTCCAAGAGgtgagttgttcatcacagatgctctcaccttgcaccctcgcagGTCCTAG Alignment from Spaln_nt2Genome CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCTGG tgccaatattcctgaattcaagactcgatctgtgttcttgcccctgttagCTTTCACTGCCATGTCTTCTCATATCTGGAACAGGAGGAAGCCCGGTTTAGGACCTCAAAGCAGTTACAGCAGCAGAGTCAGGAACTCCAAGAGgtgagttgttcatcacagatgctctcaccttgcaccctcgcagGTCCTAG Alignment from Pairagon CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCTGG tgccaatattcctgaattcaagactcgatctgtgttcttgcccctgttagCTTTCACTGCCATGTCTTCTCATATCTGGAACAGGAGGAAGCCCGGTTTAGGACCTCAAAGCAGTTACAGCAGCAGAGTCAGGAACTCCAAGAGgtgagttgttcatcacagatgctctcaccttgcaccctcgcagGTCCTAG Alignment from Exonerate_protein2genome CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCTGG tgccaatattcctgaattcaagactcgatctgtgttcttgcccctgttagCTTTCACTGCCATGTCTTCTCATATCTGGAACAGGAGGAAGCCCGGTTTAGGACCTCAAAGCAGTTACAGCAGCAGAGTCAGGAACTCCAAGAGgtgagttgttcatcacagatgctctcaccttgcaccctcgcagGTCCTAG Alignment from Exonerate_coding2genome CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCTGG tgccaatattcctgaattcaagactcgatctgtgttcttgcccctgttagCTTTCACTGCCATGTCTTCTCATATCTGGAACAGGAGGAAGCCCGGTTTAGGACCTCAAAGCAGTTACAGCAGCAGAGTCAGGAACTCCAAGAGgtgagttgttcatcacagatgctctcaccttgcaccctcgcagGTCCTAG Alignment from GeneWise CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCTGG tgccaatattcctgaattcaagactcgatctgtgttcttgcccctgttagCTTTCACTGCCATGTCTTCTCATATCTGGAACAGGAGGAAGCCCGGTTTAGGACCTCAAAGCAGTTACAGCAGCAGAGTCAGGAACTCCAAGAGgtgagttgttcatcacagatgctctcaccttgcaccctcgcagGTCCTAG #### Tctn3_ID7988_13 --> 0 - 0 Original Alignment GCAGTTAACTGCACTTCCTGCTGTCTGATACCAGTGTCCCTGGAGATCCAGGTGTTGTGGGCACATCTAGGACTTCAGTCCAACCCACAAGCTCATGTGGCCGGAGCCAGATTCCTGTACCAATGCAAGTCTGTACAG ataagagggttccacagtcccagtcggactcaatgttacccttacctcagGCAGTCAACTGCACCTCCTGTTGCCTGATAACAGTATCCCTAAAGCTCCAGGTATTATGGGCACATCTTGCACTTCAGTCAAACCCACAGTCTCATGTG---------------GTCTACCAATGCAAGGCAGTTCAGgtaggtctgtagcttacagccatttgtacatccccagcttacaattacat Alignment from CESAR GCAGTTAACTGCACTTCCTGCTGTCTGATACCAGTGTCCCTGGAGATCCAGGTGTTGTGGGCACATCTAGGACTTCAGTCCAACCCACAAGCTCATGTGGCCGGAGCCAGATTCCTGTACCAATGCAAGTCTGTACAG ataagagggttccacagtcccagtcggactcaatgttacccttacctcagGCAGTCAACTGCACCTCCTGTTGCCTGATAACAGTATCCCTAAAGCTCCAGGTATTATGGGCACATCTTGCACTTCAGTCAAACCCACAGTCTCATGTGGTC---------------TACCAATGCAAGGCAGTTCAGgtaggtctgtagcttacagccatttgtacatccccagcttacaattacat Alignment from Spaln_aa2Genome GCAGTTAACTGCACTTCCTGCTGTCTGATACCAGTGTCCCTGGAGATCCAGGTGTTGTGGGCACATCTAGGACTTCAGTCCAACCCACAAGCTCATGTGGCCGGAGCCAGATTCCTGTACCAATGCAAGTCTGTACAG ataagagggttccacagtcccagtcggactcaatgttacccttacctcagGCAGTCAACTGCACCTCCTGTTGCCTGATAACAGTATCCCTAAAGCTCCAGGTATTATGGGCACATCTTGCACTTCAGTCAAACCCACAGTCTCATGTG---------------GTCTACCAATGCAAGGCAGTTCAGgtaggtctgtagcttacagccatttgtacatccccagcttacaattacat Alignment from Spaln_nt2Genome GCAGTTAACTGCACTTCCTGCTGTCTGATACCAGTGTCCCTGGAGATCCAGGTGTTGTGGGCACATCTAGGACTTCAGTCCAACCCACAAGCTCATGTGGCCGGAGCCAGATTCCTGTACCAATGCAAGTCTGTACAG ataagagggttccacagtcccagtcggactcaatgttacccttacctcagGCAGTCAACTGCACCTCCTGTTGCCTGATAACAGTATCCCTAAAGCTCCAGGTATTATGGGCACATCTTGCACTTCAGTCAAACCCACAGTCTCATGTGG---------------TCTACCAATGCAAGGCAGTTCAGgtaggtctgtagcttacagccatttgtacatccccagcttacaattacat Alignment from Pairagon GCAGTTAACTGCACTTCCTGCTGTCTGATACCAGTGTCCCTGGAGATCCAGGTGTTGTGGGCACATCTAGGACTTCAGTCCAACCCACAAGCTCATGTGGCCGGAGCCAGATTCCTGTACCAATGCAAGTCTGTACAG ataagagggttccacagtcccagtcggactcaatgttacccttacctcagGCAGTCAACTGCACCTCCTGTTGCCTGATAACAGTATCCCTAAAGCTCCAGGTATTATGGGCACATCTTGCACTTCAGTCAAACCCACAGTCTCATGTGGTC---------------TACCAATGCAAGGCAGTTCAGgtaggtctgtagcttacagccatttgtacatccccagcttacaattacat Alignment from Exonerate_protein2genome GCAGTTAACTGCACTTCCTGCTGTCTGATACCAGTGTCCCTGGAGATCCAGGTGTTGTGGGCACATCTAGGACTTCAGTCCAACCCACAAGCTCATGTGGCCGGAGCCAGATTCCTGTACCAATGCAAGTCTGTACAG ataagagggttccacagtcccagtcggactcaatgttacccttacctcagGCAGTCAACTGCACCTCCTGTTGCCTGATAACAGTATCCCTAAAGCTCCAGGTATTATGGGCACATCTTGCACTTCAGTCAAACCCACAGTCTCATGTG---------------GTCTACCAATGCAAGGCAGTTCAGgtaggtctgtagcttacagccatttgtacatccccagcttacaattacat Alignment from Exonerate_coding2genome GCAGTTAACTGCACTTCCTGCTGTCTGATACCAGTGTCCCTGGAGATCCAGGTGTTGTGGGCACATCTAGGACTTCAGTCCAACCCACAAGCTCATGTGGCCGGAGCCAGATTCCTGTACCAATGCAAGTCTGTACAG ataagagggttccacagtcccagtcggactcaatgttacccttacctcagGCAGTCAACTGCACCTCCTGTTGCCTGATAACAGTATCCCTAAAGCTCCAGGTATTATGGGCACATCTTGCACTTCAGTCAAACCCACAGTCTCATGTG---------------GTCTACCAATGCAAGGCAGTTCAGgtaggtctgtagcttacagccatttgtacatccccagcttacaattacat Alignment from GeneWise GCAGTTAACTGCACTTCCTGCTGTCTGATACCAGTGTCCCTGGAGATCCAGGTGTTGTGGGCACATCTAGGACTTCAGTCCAACCCACAAGCTCATGTGGCCGGAGCCAGATTCCTGTACCAATGCAAGTCTGTACAG ataagagggttccacagtcccagtcggactcaatgttacccttacctcagGCAGTCAACTGCACCTCCTGTTGCCTGATAACAGTATCCCTAAAGCTCCAGGTATTATGGGCACATCTTGCACTTCAGTCAAACCCACAGTCTCATGTG---------------GTCTACCAATGCAAGGCAGTTCAGgtaggtctgtagcttacagccatttgtacatccccagcttacaattacat #### Tctn3_ID7990_11 --> 0 - 2 Original Alignment ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAag gtaacaacctcactgatcccttatcacttatttttgttttgtgcatatagATGACCCTACTGCAGAGTGAGGCTAATGGAGTTTGCTCTGCTAAGAGACATGCAGTGCAATTTGGTGTGAATGCATTCTCTGGGTGCCAATTGaggtgagtggcttgtatgaaatgactctgtgatgagactttactagttggat Alignment from CESAR ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAag gtaacaacctcactgatcccttatcacttatttttgttttgtgcatatagATGACCCTACTGCAGAGTGAGGCTAATGGAGTTTGCTCTGCTAAGAGACATGCAGTGCAATTTGGTGTGAATGCATTCTCTGGGTGCCAATTGaggtgagtggcttgtatgaaatgactctgtgatgagactttactagttggat Alignment from Spaln_aa2Genome ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG gtaacaacctcactgatcccttatcacttatttttgttttgtgcatatagATGACCCTACTGCAGAGTGAGGCTAATGGAGTTTGCTCTGCTAAGAGACATGCAGTGCAATTTGGTGTGAATGCATTCTCTGGGTGCCAATTGAGgtgagtggcttgtatgaaatgactctgtgatgagactttactagttggat Alignment from Spaln_nt2Genome ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG gtaacaacctcactgatcccttatcacttatttttgttttgtgcatatagATGACCCTACTGCAGAGTGAGGCTAATGGAGTTTGCTCTGCTAAGAGACATGCAGTGCAATTTGGTGTGAATGCATTCTCTGGGTGCCAATTGAGgtgagtggcttgtatgaaatgactctgtgatgagactttactagttggat Alignment from Pairagon ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG gtaacaacctcactgatcccttatcacttatttttgttttgtgcatatagATGACCCTACTGCAGAGTGAGGCTAATGGAGTTTGCTCTGCTAAGAGACATGCAGTGCAATTTGGTGTGAATGCATTCTCTGGGTGCCAATTGAGgtgagtggcttgtatgaaatgactctgtgatgagactttactagttggat Alignment from Exonerate_protein2genome ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG gtaacaacctcactgatcccttatcacttatttttgttttgtgcatatagATGACCCTACTGCAGAGTGAGGCTAATGGAGTTTGCTCTGCTAAGAGACATGCAGTGCAATTTGGTGTGAATGCATTCTCTGGGTGCCAATTGAGgtgagtggcttgtatgaaatgactctgtgatgagactttactagttggat Alignment from Exonerate_coding2genome ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG gtaacaacctcactgatcccttatcacttatttttgttttgtgcatatagATGACCCTACTGCAGAGTGAGGCTAATGGAGTTTGCTCTGCTAAGAGACATGCAGTGCAATTTGGTGTGAATGCATTCTCTGGGTGCCAATTGAGgtgagtggcttgtatgaaatgactctgtgatgagactttactagttggat Alignment from GeneWise ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG gtaacaacctcactgatcccttatcacttatttttgttttgtgcatatagATGACCCTACTGCAGAGTGAGGCTAATGGAGTTTGCTCTGCTAAGAGACATGCAGTGCAATTTGGTGTGAATGCATTCTCTGGGTGCCAATTGAGgtgagtggcttgtatgaaatgactctgtgatgagactttactagttggat #### Tctn3_ID7994_7 --> 0 - 0 Original Alignment GTTCCAAGAGGTGTGACTGATCTTCAGAATATGAAG tagaagatgataatctttgtagactacaaaagtccctccaatgcctttagGTTCCACGAGGTGTTACTGATCTTCAGAATATGAAGgtatagtgctactgagacatcaagtagcctcaagaggaacaccccgctgt Alignment from CESAR GTTCCAAGAGGTGTGACTGATCTTCAGAATATGAAG tagaagatgataatctttgtagactacaaaagtccctccaatgcctttagGTTCCACGAGGTGTTACTGATCTTCAGAATATGAAGgtatagtgctactgagacatcaagtagcctcaagaggaacaccccgctgt Alignment from Spaln_aa2Genome GTTCCAAGAGGTGTGACTGATCTTCAGAATATGAAG tagaagatgataatctttgtagactacaaaagtccctccaatgcctttagGTTCCACGAGGTGTTACTGATCTTCAGAATATGAAGgtatagtgctactgagacatcaagtagcctcaagaggaacaccccgctgt Alignment from Spaln_nt2Genome GTTCCAAGAGGTGTGACTGATCTTCAGAATATGAAG tagaagatgataatctttgtagactacaaaagtccctccaatgcctttagGTTCCACGAGGTGTTACTGATCTTCAGAATATGAAGgtatagtgctactgagacatcaagtagcctcaagaggaacaccccgctgt Alignment from Pairagon GTTCCAAGAGGTGTGACTGATCTTCAGAATATGAAG tagaagatgataatctttgtagactacaaaagtccctccaatgcctttagGTTCCACGAGGTGTTACTGATCTTCAGAATATGAAGgtatagtgctactgagacatcaagtagcctcaagaggaacaccccgctgt Alignment from Exonerate_protein2genome GTTCCAAGAGGTGTGACTGATCTTCAGAATATGAAG tagaagatgataatctttgtagactacaaaagtccctccaatgcctttagGTTCCACGAGGTGTTACTGATCTTCAGAATATGAAGgtatagtgctactgagacatcaagtagcctcaagaggaacaccccgctgt Alignment from Exonerate_coding2genome GTTCCAAGAGGTGTGACTGATCTTCAGAATATGAAG tagaagatgataatctttgtagactacaaaagtccctccaatgcctttagGTTCCACGAGGTGTTACTGATCTTCAGAATATGAAGgtatagtgctactgagacatcaagtagcctcaagaggaacaccccgctgt Alignment from GeneWise GTTCCAAGAGGTGTGACTGATCTTCAGAATATGAAG tagaagatgataatctttgtagactacaaaagtccctccaatgcctttagGTTCCACGAGGTGTTACTGATCTTCAGAATATGAAGgtatagtgctactgagacatcaagtagcctcaagaggaacaccccgctgt #### Tdrd1_ID12208_9 --> 0 - 1 Original Alignment GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAg caggttcttgaatggtttttcctgtaggttgttctcgtcttctatttcagGCCTTAAAGTGCTGTGTATCAGGTGTCATTACCTCTGCAGGTAAGTGGAGTGAAGGATGTGTCACAGCTGTGAAGGCCCTTCTTTTTGAGCAATTCTGCTCTATCAAAGTCATGGTCATCATAGAGGAGGAGGTCCTTACGTGTGCTGTAGATCTTGTCTTACAGAGCTCAggtaagcgaactggagaactatctaggaccctaaggcactcaacatgagat Alignment from CESAR GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAg caggttcttgaatggtttttcctgtaggttgttctcgtcttctatttcagGCCTTAAAGTGCTGTGTATCAGGTGTCATTACCTCTGCAGGTAAGTGGAGTGAAGGATGTGTCACAGCTGTGAAGGCCCTTCTTTTTGAGCAATTCTGCTCTATCAAAGTCATGGTCATCATAGAGGAGGAGGTCCTTACGTGTGCTGTAGATCTTGTCTTACAGAGCTCAggtaagcgaactggagaactatctaggaccctaaggcactcaacatgagat Alignment from Spaln_aa2Genome GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAG caggttcttgaatggtttttcctgtaggttgttctcgtcttctatttcagGCCTTAAAGTGCTGTGTATCAGGTGTCATTACCTCTGCAGGTAAGTGGAGTGAAGGATGTGTCACAGCTGTGAAGGCCCTTCTTTTTGAGCAATTCTGCTCTATCAAAGTCATGGTCATCATAGAGGAGGAGGTCCTTACGTGTGCTGTAGATCTTGTCTTACAGAGCTCAGgtaagcgaactggagaactatctaggaccctaaggcactcaacatgagat Alignment from Spaln_nt2Genome GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAG caggttcttgaatggtttttcctgtaggttgttctcgtcttctatttcagGCCTTAAAGTGCTGTGTATCAGGTGTCATTACCTCTGCAGGTAAGTGGAGTGAAGGATGTGTCACAGCTGTGAAGGCCCTTCTTTTTGAGCAATTCTGCTCTATCAAAGTCATGGTCATCATAGAGGAGGAGGTCCTTACGTGTGCTGTAGATCTTGTCTTACAGAGCTCAGgtaagcgaactggagaactatctaggaccctaaggcactcaacatgagat Alignment from Pairagon GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAG caggttcttgaatggtttttcctgtaggttgttctcgtcttctatttcagGCCTTAAAGTGCTGTGTATCAGGTGTCATTACCTCTGCAGGTAAGTGGAGTGAAGGATGTGTCACAGCTGTGAAGGCCCTTCTTTTTGAGCAATTCTGCTCTATCAAAGTCATGGTCATCATAGAGGAGGAGGTCCTTACGTGTGCTGTAGATCTTGTCTTACAGAGCTCAGgtaagcgaactggagaactatctaggaccctaaggcactcaacatgagat Alignment from Exonerate_protein2genome GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAG caggttcttgaatggtttttcctgtaggttgttctcgtcttctatttcagGCCTTAAAGTGCTGTGTATCAGGTGTCATTACCTCTGCAGGTAAGTGGAGTGAAGGATGTGTCACAGCTGTGAAGGCCCTTCTTTTTGAGCAATTCTGCTCTATCAAAGTCATGGTCATCATAGAGGAGGAGGTCCTTACGTGTGCTGTAGATCTTGTCTTACAGAGCTCAGgtaagcgaactggagaactatctaggaccctaaggcactcaacatgagat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAG caggttcttgaatggtttttcctgtaggttgttctcgtcttctatttcagGCCTTAAAGTGCTGTGTATCAGGTGTCATTACCTCTGCAGGTAAGTGGAGTGAAGGATGTGTCACAGCTGTGAAGGCCCTTCTTTTTGAGCAATTCTGCTCTATCAAAGTCATGGTCATCATAGAGGAGGAGGTCCTTACGTGTGCTGTAGATCTTGTCTTACAGAGCTCAGgtaagcgaactggagaactatctaggaccctaaggcactcaacatgagat #### Tdrd1_ID12210_11 --> 2 - 1 Original Alignment gtGCATTGGAGGACGTTGGAAGAGTGACAGTTGAGAGCAAGATTGTGACAGACAGAAATGCCCTGATCCCCAAAGTGCTGACTTTGAATGTGGGTGATGAGTTCTGTGGCGTGGTTGCCCACATCCAGACACCAGAGGACTTCTTTTGTCAGCAGCTGCAGAGCGGCc cagtactcattgagcatttctaggattttgcgtggctattcctttattaggtCCATTGGAGGATGTTGGTAGGGTGACAGTTGAGGGCAAAATTGTTACTGACAAGAATGCTCTGCTTCCTAAAGTGCTTACTTTGAATCTTGGTGATGAGTTTTGTGGTGTAGTTGCCTATAATGATACTCCGGAGGAGCTCTTTTGCCAACAGTTGCACAGCGGCcgtataggtattttttaagtcctggattcagaaaaaacaatccatccatgg Alignment from CESAR gtGCATTGGAGGACGTTGGAAGAGTGACAGTTGAGAGCAAGATTGTGACAGACAGAAATGCCCTGATCCCCAAAGTGCTGACTTTGAATGTGGGTGATGAGTTCTGTGGCGTGGTTGCCCACATCCAGACACCAGAGGACTTCTTTTGTCAGCAGCTGCAGAGCGGCc cagtactcattgagcatttctaggattttgcgtggctattcctttattaggtCCATTGGAGGATGTTGGTAGGGTGACAGTTGAGGGCAAAATTGTTACTGACAAGAATGCTCTGCTTCCTAAAGTGCTTACTTTGAATCTTGGTGATGAGTTTTGTGGTGTAGTTGCCTATAATGATACTCCGGAGGAGCTCTTTTGCCAACAGTTGCACAGCGGCcgtataggtattttttaagtcctggattcagaaaaaacaatccatccatgg Alignment from Spaln_aa2Genome GTGCATTGGAGGACGTTGGAAGAGTGACAGTTGAGAGCAAGATTGTGACAGACAGAAATGCCCTGATCCCCAAAGTGCTGACTTTGAATGTGGGTGATGAGTTCTGTGGCGTGGTTGCCCACATCCAGACACCAGAGGACTTCTTTTGTCAGCAGCTGCAGAGCGGCC cagtactcattgagcatttctaggattttgcgtggctattcctttattagGTCCATTGGAGGATGTTGGTAGGGTGACAGTTGAGGGCAAAATTGTTACTGACAAGAATGCTCTGCTTCCTAAAGTGCTTACTTTGAATCTTGGTGATGAGTTTTGTGGTGTAGTTGCCTATAATGATACTCCGGAGGAGCTCTTTTGCCAACAGTTGCACAGCGGCCgtataggtattttttaagtcctggattcagaaaaaacaatccatccatgg Alignment from Spaln_nt2Genome GTGCATTGGAGGACGTTGGAAGAGTGACAGTTGAGAGCAAGATTGTGACAGACAGAAATGCCCTGATCCCCAAAGTGCTGACTTTGAATGTGGGTGATGAGTTCTGTGGCGTGGTTGCCCACATCCAGACACCAGAGGACTTCTTTTGTCAGCAGCTGCAGAGCGGCC cagtactcattgagcatttctaggattttgcgtggctattcctttattagGTCCATTGGAGGATGTTGGTAGGGTGACAGTTGAGGGCAAAATTGTTACTGACAAGAATGCTCTGCTTCCTAAAGTGCTTACTTTGAATCTTGGTGATGAGTTTTGTGGTGTAGTTGCCTATAATGATACTCCGGAGGAGCTCTTTTGCCAACAGTTGCACAGCGGCCgtataggtattttttaagtcctggattcagaaaaaacaatccatccatgg Alignment from Pairagon GTGCATTGGAGGACGTTGGAAGAGTGACAGTTGAGAGCAAGATTGTGACAGACAGAAATGCCCTGATCCCCAAAGTGCTGACTTTGAATGTGGGTGATGAGTTCTGTGGCGTGGTTGCCCACATCCAGACACCAGAGGACTTCTTTTGTCAGCAGCTGCAGAGCGGCC cagtactcattgagcatttctaggattttgcgtggctattcctttattagGTCCATTGGAGGATGTTGGTAGGGTGACAGTTGAGGGCAAAATTGTTACTGACAAGAATGCTCTGCTTCCTAAAGTGCTTACTTTGAATCTTGGTGATGAGTTTTGTGGTGTAGTTGCCTATAATGATACTCCGGAGGAGCTCTTTTGCCAACAGTTGCACAGCGGCCgtataggtattttttaagtcctggattcagaaaaaacaatccatccatgg Alignment from Exonerate_protein2genome GTGCATTGGAGGACGTTGGAAGAGTGACAGTTGAGAGCAAGATTGTGACAGACAGAAATGCCCTGATCCCCAAAGTGCTGACTTTGAATGTGGGTGATGAGTTCTGTGGCGTGGTTGCCCACATCCAGACACCAGAGGACTTCTTTTGTCAGCAGCTGCAGAGCGGCC cagtactcattgagcatttctaggattttgcgtggctattcctttattagGTCCATTGGAGGATGTTGGTAGGGTGACAGTTGAGGGCAAAATTGTTACTGACAAGAATGCTCTGCTTCCTAAAGTGCTTACTTTGAATCTTGGTGATGAGTTTTGTGGTGTAGTTGCCTATAATGATACTCCGGAGGAGCTCTTTTGCCAACAGTTGCACAGCGGCCgtataggtattttttaagtcctggattcagaaaaaacaatccatccatgg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGCATTGGAGGACGTTGGAAGAGTGACAGTTGAGAGCAAGATTGTGACAGACAGAAATGCCCTGATCCCCAAAGTGCTGACTTTGAATGTGGGTGATGAGTTCTGTGGCGTGGTTGCCCACATCCAGACACCAGAGGACTTCTTTTGTCAGCAGCTGCAGAGCGGCC cagtactcattgagcatttctaggattttgcgtggctattcctttattagGTCCATTGGAGGATGTTGGTAGGGTGACAGTTGAGGGCAAAATTGTTACTGACAAGAATGCTCTGCTTCCTAAAGTGCTTACTTTGAATCTTGGTGATGAGTTTTGTGGTGTAGTTGCCTATAATGATACTCCGGAGGAGCTCTTTTGCCAACAGTTGCACAGCGGCCgtataggtattttttaagtcctggattcagaaaaaacaatccatccatgg #### Tdrd1_ID12215_16 --> 2 - 1 Original Alignment ccTTAGAGAAGCTCGATGACTTGAATCAGTCCTTAGCAGACTACTGTGCACAAAAGCCGCCCAATGGCTTTAAGGCAGAGATAGGGCGGCCTTGCTGTGCCTTTTTTTCAg gatcatagcagaatattgatcttgagtacctcatctcttcctccccacagcaTTGGATAAGCTTGATGACTTAAATCAGTCTTTAGCAGACTACTGTGCACAAAAGCCACCTAACAGATTTAAAGCAGAAATGGGTCGTCCTTGTTGTGCATTCTTTTCCagtaaggtcagctcaattcacacttatattgggcccactggccctagggac Alignment from CESAR ccTTAGAGAAGCTCGATGACTTGAATCAGTCCTTAGCAGACTACTGTGCACAAAAGCCGCCCAATGGCTTTAAGGCAGAGATAGGGCGGCCTTGCTGTGCCTTTTTTTCAg gatcatagcagaatattgatcttgagtacctcatctcttcctccccacagcaTTGGATAAGCTTGATGACTTAAATCAGTCTTTAGCAGACTACTGTGCACAAAAGCCACCTAACAGATTTAAAGCAGAAATGGGTCGTCCTTGTTGTGCATTCTTTTCCagtaaggtcagctcaattcacacttatattgggcccactggccctagggac Alignment from Spaln_aa2Genome CCTTAGAGAAGCTCGATGACTTGAATCAGTCCTTAGCAGACTACTGTGCACAAAAGCCGCCCAATGGCTTTAAGGCAGAGATAGGGCGGCCTTGCTGTGCCTTTTTTTCAG gatcatagcagaatattgatcttgagtacctcatctcttcctccccacagCATTGGATAAGCTTGATGACTTAAATCAGTCTTTAGCAGACTACTGTGCACAAAAGCCACCTAACAGATTTAAAGCAGAAATGGGTCGTCCTTGTTGTGCATTCTTTTCCAgtaaggtcagctcaattcacacttatattgggcccactggccctagggac Alignment from Spaln_nt2Genome CCTTAGAGAAGCTCGATGACTTGAATCAGTCCTTAGCAGACTACTGTGCACAAAAGCCGCCCAATGGCTTTAAGGCAGAGATAGGGCGGCCTTGCTGTGCCTTTTTTTCAG gatcatagcagaatattgatcttgagtacctcatctcttcctccccacagCATTGGATAAGCTTGATGACTTAAATCAGTCTTTAGCAGACTACTGTGCACAAAAGCCACCTAACAGATTTAAAGCAGAAATGGGTCGTCCTTGTTGTGCATTCTTTTCCAgtaaggtcagctcaattcacacttatattgggcccactggccctagggac Alignment from Pairagon CCTTAGAGAAGCTCGATGACTTGAATCAGTCCTTAGCAGACTACTGTGCACAAAAGCCGCCCAATGGCTTTAAGGCAGAGATAGGGCGGCCTTGCTGTGCCTTTTTTTCAG gatcatagcagaatattgatcttgagtacctcatctcttcctccccacagCATTGGATAAGCTTGATGACTTAAATCAGTCTTTAGCAGACTACTGTGCACAAAAGCCACCTAACAGATTTAAAGCAGAAATGGGTCGTCCTTGTTGTGCATTCTTTTCCAgtaaggtcagctcaattcacacttatattgggcccactggccctagggac Alignment from Exonerate_protein2genome CCTTAGAGAAGCTCGATGACTTGAATCAGTCCTTAGCAGACTACTGTGCACAAAAGCCGCCCAATGGCTTTAAGGCAGAGATAGGGCGGCCTTGCTGTGCCTTTTTTTCAG gatcatagcagaatattgatcttgagtacctcatctcttcctccccacagCATTGGATAAGCTTGATGACTTAAATCAGTCTTTAGCAGACTACTGTGCACAAAAGCCACCTAACAGATTTAAAGCAGAAATGGGTCGTCCTTGTTGTGCATTCTTTTCCAgtaaggtcagctcaattcacacttatattgggcccactggccctagggac Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCTTAGAGAAGCTCGATGACTTGAATCAGTCCTTAGCAGACTACTGTGCACAAAAGCCGCCCAATGGCTTTAAGGCAGAGATAGGGCGGCCTTGCTGTGCCTTTTTTTCAG gatcatagcagaatattgatcttgagtacctcatctcttcctccccacagCATTGGATAAGCTTGATGACTTAAATCAGTCTTTAGCAGACTACTGTGCACAAAAGCCACCTAACAGATTTAAAGCAGAAATGGGTCGTCCTTGTTGTGCATTCTTTTCCAgtaaggtcagctcaattcacacttatattgggcccactggccctagggac #### Tdrd1_ID12218_19 --> 2 - 1 Original Alignment ccAGCCCTTCAGCAGAGCAGTGGAAGACAATGGAATTGCCAGTTAACAAGACTATAGCAGCAAATGTACTAGAGATCATAAGCCCAGCCTTGTTCTACGCCATCCCCAGTGAAATGTCAg gttagaagcagtgtttggtgtatgaggattattgtattcttctcttctagcaAGACCCTCAGCAGAACAGTGGAAAACAATGGAGTTGCCAGTGAATGAGAACATAGCAGCAAATGTGCTAGAAAGCATAAGCCCAGCCTTGTTGTATGCTATCCCTAGTGAAATGGCCggtaagttaggagcttactgcacccatactgccctcctggtgaaatgcaat Alignment from CESAR ccAGCCCTTCAGCAGAGCAGTGGAAGACAATGGAATTGCCAGTTAACAAGACTATAGCAGCAAATGTACTAGAGATCATAAGCCCAGCCTTGTTCTACGCCATCCCCAGTGAAATGTCAg gttagaagcagtgtttggtgtatgaggattattgtattcttctcttctagcaAGACCCTCAGCAGAACAGTGGAAAACAATGGAGTTGCCAGTGAATGAGAACATAGCAGCAAATGTGCTAGAAAGCATAAGCCCAGCCTTGTTGTATGCTATCCCTAGTGAAATGGCCggtaagttaggagcttactgcacccatactgccctcctggtgaaatgcaat Alignment from Spaln_aa2Genome CCAGCCCTTCAGCAGAGCAGTGGAAGACAATGGAATTGCCAGTTAACAAGACTATAGCAGCAAATGTACTAGAGATCATAAGCCCAGCCTTGTTCTACGCCATCCCCAGTGAAATGTCAG gttagaagcagtgtttggtgtatgaggattattgtattcttctcttctagCAAGACCCTCAGCAGAACAGTGGAAAACAATGGAGTTGCCAGTGAATGAGAACATAGCAGCAAATGTGCTAGAAAGCATAAGCCCAGCCTTGTTGTATGCTATCCCTAGTGAAATGGCCGgtaagttaggagcttactgcacccatactgccctcctggtgaaatgcaat Alignment from Spaln_nt2Genome CCAGCCCTTCAGCAGAGCAGTGGAAGACAATGGAATTGCCAGTTAACAAGACTATAGCAGCAAATGTACTAGAGATCATAAGCCCAGCCTTGTTCTACGCCATCCCCAGTGAAATGTCAG gttagaagcagtgtttggtgtatgaggattattgtattcttctcttctagCAAGACCCTCAGCAGAACAGTGGAAAACAATGGAGTTGCCAGTGAATGAGAACATAGCAGCAAATGTGCTAGAAAGCATAAGCCCAGCCTTGTTGTATGCTATCCCTAGTGAAATGGCCGgtaagttaggagcttactgcacccatactgccctcctggtgaaatgcaat Alignment from Pairagon CCAGCCCTTCAGCAGAGCAGTGGAAGACAATGGAATTGCCAGTTAACAAGACTATAGCAGCAAATGTACTAGAGATCATAAGCCCAGCCTTGTTCTACGCCATCCCCAGTGAAATGTCAG gttagaagcagtgtttggtgtatgaggattattgtattcttctcttctagCAAGACCCTCAGCAGAACAGTGGAAAACAATGGAGTTGCCAGTGAATGAGAACATAGCAGCAAATGTGCTAGAAAGCATAAGCCCAGCCTTGTTGTATGCTATCCCTAGTGAAATGGCCGgtaagttaggagcttactgcacccatactgccctcctggtgaaatgcaat Alignment from Exonerate_protein2genome CCAGCCCTTCAGCAGAGCAGTGGAAGACAATGGAATTGCCAGTTAACAAGACTATAGCAGCAAATGTACTAGAGATCATAAGCCCAGCCTTGTTCTACGCCATCCCCAGTGAAATGTCAG gttagaagcagtgtttggtgtatgaggattattgtattcttctcttctagCAAGACCCTCAGCAGAACAGTGGAAAACAATGGAGTTGCCAGTGAATGAGAACATAGCAGCAAATGTGCTAGAAAGCATAAGCCCAGCCTTGTTGTATGCTATCCCTAGTGAAATGGCCGgtaagttaggagcttactgcacccatactgccctcctggtgaaatgcaat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCCTTCAGCAGAGCAGTGGAAGACAATGGAATTGCCAGTTAACAAGACTATAGCAGCAAATGTACTAGAGATCATAAGCCCAGCCTTGTTCTACGCCATCCCCAGTGAAATGTCAG gttagaagcagtgtttggtgtatgaggattattgtattcttctcttctagcaagACCCTCAGCAGAACAGTGGAAAACAATGGAGTTGCCAGTGAATGAGAACATAGCAGCAAATGTGCTAGAAAGCATAAGCCCAGCCTTGTTGTATGCTATCCCTAGTGAAATGGCCGgtaagttaggagcttactgcacccatactgccctcctggtgaaatgcaat #### Tectb_ID11563_6 --> 1 - 2 Original Alignment gTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCCTTACAGTGGCAGCTCATCAATAAGgg aaattcaattttgtaatggtattgttttctgtctttccttggtcttataggTTCAAAGTGGTCTTGAATAGCTGCTGGGCAACCCCCTTGGCTGACTTCATGTACCCTTTACAGTGGCAGCTTATCAATAAGgggtcagtaccaataacaactacatgatgctggtatgtttcttggaccccca Alignment from CESAR gTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCCTTACAGTGGCAGCTCATCAATAAGgg aaattcaattttgtaatggtattgttttctgtctttccttggtcttataggTTCAAAGTGGTCTTGAATAGCTGCTGGGCAACCCCCTTGGCTGACTTCATGTACCCTTTACAGTGGCAGCTTATCAATAAGgggtcagtaccaataacaactacatgatgctggtatgtttcttggaccccca Alignment from Spaln_aa2Genome GTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCCTTACAGTGGCAGCTCATCAATAAGGG aaattcaattttgtaatggtattgttttctgtctttccttggtcttatagGTTCAAAGTGGTCTTGAATAGCTGCTGGGCAACCCCCTTGGCTGACTTCATGTACCCTTTACAGTGGCAGCTTATCAATAAGGGgtcagtaccaataacaactacatgatgctggtatgtttcttggaccccca Alignment from Spaln_nt2Genome GTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCCTTACAGTGGCAGCTCATCAATAAGGG aaattcaattttgtaatggtattgttttctgtctttccttggtcttatagGTTCAAAGTGGTCTTGAATAGCTGCTGGGCAACCCCCTTGGCTGACTTCATGTACCCTTTACAGTGGCAGCTTATCAATAAGGGgtcagtaccaataacaactacatgatgctggtatgtttcttggaccccca Alignment from Pairagon GTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCCTTACAGTGGCAGCTCATCAATAAGGG aaattcaattttgtaatggtattgttttctgtctttccttggtcttatagGTTCAAAGTGGTCTTGAATAGCTGCTGGGCAACCCCCTTGGCTGACTTCATGTACCCTTTACAGTGGCAGCTTATCAATAAGGGgtcagtaccaataacaactacatgatgctggtatgtttcttggaccccca Alignment from Exonerate_protein2genome GTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCCTTACAGTGGCAGCTCATCAATAAGGG aaattcaattttgtaatggtattgttttctgtctttccttggtcttatagGTTCAAAGTGGTCTTGAATAGCTGCTGGGCAACCCCCTTGGCTGACTTCATGTACCCTTTACAGTGGCAGCTTATCAATAAGGGgtcagtaccaataacaactacatgatgctggtatgtttcttggaccccca Alignment from Exonerate_coding2genome GTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCCTTACAGTGGCAGCTCATCAATAAGGG aaattcaattttgtaatggtattgttttctgtctttccttggtcttatagGTTCAAAGTGGTCTTGAATAGCTGCTGGGCAACCCCCTTGGCTGACTTCATGTACCCTTTACAGTGGCAGCTTATCAATAAGGGgtcagtaccaataacaactacatgatgctggtatgtttcttggaccccca Alignment from GeneWise GTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCCTTACAGTGGCAGCTCATCAATAAGGG aaattcaattttgtaatggtattgttttctgtctttccttggtcttatagGTTCAAAGTGGTCTTGAATAGCTGCTGGGCAACCCCCTTGGCTGACTTCATGTACCCTTTACAGTGGCAGCTTATCAATAAGGGgtcagtaccaataacaactacatgatgctggtatgtttcttggaccccca #### Tjp2_ID5264_22 --> 0 - 2 Original Alignment ATCGAAATAGCTCAGAAGCACCCTGACATCTATGCGGTTCCAATCAAGGCCCCCAAGCCAGATGCTGGCCTCCCCCCGCACATGag tacttcttaaggattgctctacaattcaacctgtgcccgggccattacagATTGAAATAGCTCAGAAGCATCCTGACATATGTGCAGTCCCAATTAAGTCCCCGAAGCCAGATGCAGGCCTTCCCCCACACATGaggtaggaggtgtctggctgttggccagtgcatttggagctagcagagtggc Alignment from CESAR ATCGAAATAGCTCAGAAGCACCCTGACATCTATGCGGTTCCAATCAAGGCCCCCAAGCCAGATGCTGGCCTCCCCCCGCACATGag tacttcttaaggattgctctacaattcaacctgtgcccgggccattacagATTGAAATAGCTCAGAAGCATCCTGACATATGTGCAGTCCCAATTAAGTCCCCGAAGCCAGATGCAGGCCTTCCCCCACACATGaggtaggaggtgtctggctgttggccagtgcatttggagctagcagagtggc Alignment from Spaln_aa2Genome ATCGAAATAGCTCAGAAGCACCCTGACATCTATGCGGTTCCAATCAAGGCCCCCAAGCCAGATGCTGGCCTCCCCCCGCACATGAG tacttcttaaggattgctctacaattcaacctgtgcccgggccattacagATTGAAATAGCTCAGAAGCATCCTGACATATGTGCAGTCCCAATTAAGTCCCCGAAGCCAGATGCAGGCCTTCCCCCACACATGAGgtaggaggtgtctggctgttggccagtgcatttggagctagcagagtggc Alignment from Spaln_nt2Genome ATCGAAATAGCTCAGAAGCACCCTGACATCTATGCGGTTCCAATCAAGGCCCCCAAGCCAGATGCTGGCCTCCCCCCGCACATGAG tacttcttaaggattgctctacaattcaacctgtgcccgggccattacagATTGAAATAGCTCAGAAGCATCCTGACATATGTGCAGTCCCAATTAAGTCCCCGAAGCCAGATGCAGGCCTTCCCCCACACATGAGgtaggaggtgtctggctgttggccagtgcatttggagctagcagagtggc Alignment from Pairagon ATCGAAATAGCTCAGAAGCACCCTGACATCTATGCGGTTCCAATCAAGGCCCCCAAGCCAGATGCTGGCCTCCCCCCGCACATGAG tacttcttaaggattgctctacaattcaacctgtgcccgggccattacagATTGAAATAGCTCAGAAGCATCCTGACATATGTGCAGTCCCAATTAAGTCCCCGAAGCCAGATGCAGGCCTTCCCCCACACATGAGgtaggaggtgtctggctgttggccagtgcatttggagctagcagagtggc Alignment from Exonerate_protein2genome ATCGAAATAGCTCAGAAGCACCCTGACATCTATGCGGTTCCAATCAAGGCCCCCAAGCCAGATGCTGGCCTCCCCCCGCACATGAG tacttcttaaggattgctctacaattcaacctgtgcccgggccattacagATTGAAATAGCTCAGAAGCATCCTGACATATGTGCAGTCCCAATTAAGTCCCCGAAGCCAGATGCAGGCCTTCCCCCACACATGAGgtaggaggtgtctggctgttggccagtgcatttggagctagcagagtggc Alignment from Exonerate_coding2genome ATCGAAATAGCTCAGAAGCACCCTGACATCTATGCGGTTCCAATCAAGGCCCCCAAGCCAGATGCTGGCCTCCCCCCGCACATGAG tacttcttaaggattgctctacaattcaacctgtgcccgggccattacagATTGAAATAGCTCAGAAGCATCCTGACATATGTGCAGTCCCAATTAAGTCCCCGAAGCCAGATGCAGGCCTTCCCCCACACATGAGgtaggaggtgtctggctgttggccagtgcatttggagctagcagagtggc Alignment from GeneWise ATCGAAATAGCTCAGAAGCACCCTGACATCTATGCGGTTCCAATCAAGGCCCCCAAGCCAGATGCTGGCCTCCCCCCGCACATGAG tacttcttaaggattgctctacaattcaacctgtgcccgggccattacagATTGAAATAGCTCAGAAGCATCCTGACATATGTGCAGTCCCAATTAAGTCCCCGAAGCCAGATGCAGGCCTTCCCCCACACATGAGgtaggaggtgtctggctgttggccagtgcatttggagctagcagagtggc #### Tjp2_ID5270_17 --> 0 - 1 Original Alignment GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAg cccgtcactttcagggacaccaatcagatattttcttctttatttttcagGACAAGCATGCCCTGCTTGGTGTTACTCCCAAAGCAGCAGACCTGCTCAACTATACTCAGTGGTTTCCTATTGTCATTTTTTTCAATCCAGACACCAGACATGGGGTTAAAACAATAAGACAACGCCTGAGCCCAACATCGAACAAGAGCTCTCGAAAATTGTTTGATCAGGCCAACAAGCTTAAAAAGACCTGTTCCCATCTATTTACAggtaagtgtaatcccgaaaaagctctctgcccaccctgccacgagaaatta Alignment from CESAR GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAg cccgtcactttcagggacaccaatcagatattttcttctttatttttcagGACAAGCATGCCCTGCTTGGTGTTACTCCCAAAGCAGCAGACCTGCTCAACTATACTCAGTGGTTTCCTATTGTCATTTTTTTCAATCCAGACACCAGACATGGGGTTAAAACAATAAGACAACGCCTGAGCCCAACATCGAACAAGAGCTCTCGAAAATTGTTTGATCAGGCCAACAAGCTTAAAAAGACCTGTTCCCATCTATTTACAggtaagtgtaatcccgaaaaagctctctgcccaccctgccacgagaaatta Alignment from Spaln_aa2Genome GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG cccgtcactttcagggacaccaatcagatattttcttctttatttttcagGACAAGCATGCCCTGCTTGGTGTTACTCCCAAAGCAGCAGACCTGCTCAACTATACTCAGTGGTTTCCTATTGTCATTTTTTTCAATCCAGACACCAGACATGGGGTTAAAACAATAAGACAACGCCTGAGCCCAACATCGAACAAGAGCTCTCGAAAATTGTTTGATCAGGCCAACAAGCTTAAAAAGACCTGTTCCCATCTATTTACAGgtaagtgtaatcccgaaaaagctctctgcccaccctgccacgagaaatta Alignment from Spaln_nt2Genome GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG cccgtcactttcagggacaccaatcagatattttcttctttatttttcagGACAAGCATGCCCTGCTTGGTGTTACTCCCAAAGCAGCAGACCTGCTCAACTATACTCAGTGGTTTCCTATTGTCATTTTTTTCAATCCAGACACCAGACATGGGGTTAAAACAATAAGACAACGCCTGAGCCCAACATCGAACAAGAGCTCTCGAAAATTGTTTGATCAGGCCAACAAGCTTAAAAAGACCTGTTCCCATCTATTTACAGgtaagtgtaatcccgaaaaagctctctgcccaccctgccacgagaaatta Alignment from Pairagon GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG cccgtcactttcagggacaccaatcagatattttcttctttatttttcagGACAAGCATGCCCTGCTTGGTGTTACTCCCAAAGCAGCAGACCTGCTCAACTATACTCAGTGGTTTCCTATTGTCATTTTTTTCAATCCAGACACCAGACATGGGGTTAAAACAATAAGACAACGCCTGAGCCCAACATCGAACAAGAGCTCTCGAAAATTGTTTGATCAGGCCAACAAGCTTAAAAAGACCTGTTCCCATCTATTTACAGgtaagtgtaatcccgaaaaagctctctgcccaccctgccacgagaaatta Alignment from Exonerate_protein2genome GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG cccgtcactttcagggacaccaatcagatattttcttctttatttttcagGACAAGCATGCCCTGCTTGGTGTTACTCCCAAAGCAGCAGACCTGCTCAACTATACTCAGTGGTTTCCTATTGTCATTTTTTTCAATCCAGACACCAGACATGGGGTTAAAACAATAAGACAACGCCTGAGCCCAACATCGAACAAGAGCTCTCGAAAATTGTTTGATCAGGCCAACAAGCTTAAAAAGACCTGTTCCCATCTATTTACAGgtaagtgtaatcccgaaaaagctctctgcccaccctgccacgagaaatta Alignment from Exonerate_coding2genome GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG cccgtcactttcagggacaccaatcagatattttcttctttatttttcagGACAAGCATGCCCTGCTTGGTGTTACTCCCAAAGCAGCAGACCTGCTCAACTATACTCAGTGGTTTCCTATTGTCATTTTTTTCAATCCAGACACCAGACATGGGGTTAAAACAATAAGACAACGCCTGAGCCCAACATCGAACAAGAGCTCTCGAAAATTGTTTGATCAGGCCAACAAGCTTAAAAAGACCTGTTCCCATCTATTTACAGgtaagtgtaatcccgaaaaagctctctgcccaccctgccacgagaaatta Alignment from GeneWise GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG cccgtcactttcagggacaccaatcagatattttcttctttatttttcagGACAAGCATGCCCTGCTTGGTGTTACTCCCAAAGCAGCAGACCTGCTCAACTATACTCAGTGGTTTCCTATTGTCATTTTTTTCAATCCAGACACCAGACATGGGGTTAAAACAATAAGACAACGCCTGAGCCCAACATCGAACAAGAGCTCTCGAAAATTGTTTGATCAGGCCAACAAGCTTAAAAAGACCTGTTCCCATCTATTTACAGgtaagtgtaatcccgaaaaagctctctgcccaccctgccacgagaaatta #### Tjp2_ID5276_11 --> 1 - 0 Original Alignment cCCTAACACCAAA---ATGGTGAGGTTCAAGAAGGGAGACAGCGTGGGCCTCCGGTTGGCTGGTGGAAACGACGTTGGGATATTTGTGGCTGGCATTCAGGAGGGCACCTCCGCAGAGCAGGAGGGCCTGCAAGAAGGAGACCAGATTCTGAAG acaaattaaccaattatgactcctccatttacctaagcttctctttgcagcCCCAACACCAGGATTGTTGTAAGGTTTAAAAAGGGTGAAGGTGTAGGCCTCCGGTTGGCTGGTGGGAATGATGTTGGAGTGTTTGTGGCTGGCATTCAAGAGGGCACCACCGCTGAGCAGGAAGGCCTGCAGGAAGTAGACCAGATTCTGAAGgtgggtgagtctaccttgcttcaagcattctgtaaactattttaggtggt Alignment from CESAR cCCTAACACCAAAATG---GTGAGGTTCAAGAAGGGAGACAGCGTGGGCCTCCGGTTGGCTGGTGGAAACGACGTTGGGATATTTGTGGCTGGCATTCAGGAGGGCACCTCCGCAGAGCAGGAGGGCCTGCAAGAAGGAGACCAGATTCTGAAG acaaattaaccaattatgactcctccatttacctaagcttctctttgcagcCCCAACACCAGGATTGTTGTAAGGTTTAAAAAGGGTGAAGGTGTAGGCCTCCGGTTGGCTGGTGGGAATGATGTTGGAGTGTTTGTGGCTGGCATTCAAGAGGGCACCACCGCTGAGCAGGAAGGCCTGCAGGAAGTAGACCAGATTCTGAAGgtgggtgagtctaccttgcttcaagcattctgtaaactattttaggtggt Alignment from Spaln_aa2Genome CCCTAACACCAAAATG---GTGAGGTTCAAGAAGGGAGACAGCGTGGGCCTCCGGTTGGCTGGTGGAAACGACGTTGGGATATTTGTGGCTGGCATTCAGGAGGGCACCTCCGCAGAGCAGGAGGGCCTGCAAGAAGGAGACCAGATTCTGAAG acaaattaaccaattatgactcctccatttacctaagcttctctttgcagCCCCAACACCAGGATTGTTGTAAGGTTTAAAAAGGGTGAAGGTGTAGGCCTCCGGTTGGCTGGTGGGAATGATGTTGGAGTGTTTGTGGCTGGCATTCAAGAGGGCACCACCGCTGAGCAGGAAGGCCTGCAGGAAGTAGACCAGATTCTGAAGgtgggtgagtctaccttgcttcaagcattctgtaaactattttaggtggt Alignment from Spaln_nt2Genome CCCTAACACCAAAATGGTG---AGGTTCAAGAAGGGAGACAGCGTGGGCCTCCGGTTGGCTGGTGGAAACGACGTTGGGATATTTGTGGCTGGCATTCAGGAGGGCACCTCCGCAGAGCAGGAGGGCCTGCAAGAAGGAGACCAGATTCTGAAG acaaattaaccaattatgactcctccatttacctaagcttctctttgcagCCCCAACACCAGGATTGTTGTAAGGTTTAAAAAGGGTGAAGGTGTAGGCCTCCGGTTGGCTGGTGGGAATGATGTTGGAGTGTTTGTGGCTGGCATTCAAGAGGGCACCACCGCTGAGCAGGAAGGCCTGCAGGAAGTAGACCAGATTCTGAAGgtgggtgagtctaccttgcttcaagcattctgtaaactattttaggtggt Alignment from Pairagon CCCTAACACCAAAA---TGGTGAGGTTCAAGAAGGGAGACAGCGTGGGCCTCCGGTTGGCTGGTGGAAACGACGTTGGGATATTTGTGGCTGGCATTCAGGAGGGCACCTCCGCAGAGCAGGAGGGCCTGCAAGAAGGAGACCAGATTCTGAAG acaaattaaccaattatgactcctccatttacctaagcttctctttgcagCCCCAACACCAGGATTGTTGTAAGGTTTAAAAAGGGTGAAGGTGTAGGCCTCCGGTTGGCTGGTGGGAATGATGTTGGAGTGTTTGTGGCTGGCATTCAAGAGGGCACCACCGCTGAGCAGGAAGGCCTGCAGGAAGTAGACCAGATTCTGAAGgtgggtgagtctaccttgcttcaagcattctgtaaactattttaggtggt Alignment from Exonerate_protein2genome CCCTAACACCAAA---ATGGTGAGGTTCAAGAAGGGAGACAGCGTGGGCCTCCGGTTGGCTGGTGGAAACGACGTTGGGATATTTGTGGCTGGCATTCAGGAGGGCACCTCCGCAGAGCAGGAGGGCCTGCAAGAAGGAGACCAGATTCTGAAG acaaattaaccaattatgactcctccatttacctaagcttctctttgcagCCCCAACACCAGGATTGTTGTAAGGTTTAAAAAGGGTGAAGGTGTAGGCCTCCGGTTGGCTGGTGGGAATGATGTTGGAGTGTTTGTGGCTGGCATTCAAGAGGGCACCACCGCTGAGCAGGAAGGCCTGCAGGAAGTAGACCAGATTCTGAAGgtgggtgagtctaccttgcttcaagcattctgtaaactattttaggtggt Alignment from Exonerate_coding2genome CCCTAACACCAAA---ATGGTGAGGTTCAAGAAGGGAGACAGCGTGGGCCTCCGGTTGGCTGGTGGAAACGACGTTGGGATATTTGTGGCTGGCATTCAGGAGGGCACCTCCGCAGAGCAGGAGGGCCTGCAAGAAGGAGACCAGATTCTGAAG acaaattaaccaattatgactcctccatttacctaagcttctctttgcagCCCCAACACCAGGATTGTTGTAAGGTTTAAAAAGGGTGAAGGTGTAGGCCTCCGGTTGGCTGGTGGGAATGATGTTGGAGTGTTTGTGGCTGGCATTCAAGAGGGCACCACCGCTGAGCAGGAAGGCCTGCAGGAAGTAGACCAGATTCTGAAGgtgggtgagtctaccttgcttcaagcattctgtaaactattttaggtggt Alignment from GeneWise CCCTAACACCAAA---ATGGTGAGGTTCAAGAAGGGAGACAGCGTGGGCCTCCGGTTGGCTGGTGGAAACGACGTTGGGATATTTGTGGCTGGCATTCAGGAGGGCACCTCCGCAGAGCAGGAGGGCCTGCAAGAAGGAGACCAGATTCTGAAG acaaattaaccaattatgactcctccatttacctaagcttctctttgcagCCCCAACACCAGGATTGTTGTAAGGTTTAAAAAGGGTGAAGGTGTAGGCCTCCGGTTGGCTGGTGGGAATGATGTTGGAGTGTTTGTGGCTGGCATTCAAGAGGGCACCACCGCTGAGCAGGAAGGCCTGCAGGAAGTAGACCAGATTCTGAAGgtgggtgagtctaccttgcttcaagcattctgtaaactattttaggtggt #### Tjp2_ID5282_5 --> 0 - 1 Original Alignment GTGGTCAAGAGACCCCGGAAGGTTCAGGTGGCCCCACTGCAAGGCAGCCCCCCTCTCAGTCATGACGACCGAGGTTTTGAAGTGATTGAAGAATTTGATGGCAGAAGTTTCCGCAGCGGCTACAGTGAGAGGAGTCGGCACAGCAGCCACGACATGCTCAGCCACAGCTGGGAGGGCAATAGGGAGAGGGGGCGACCC---------CATCAGCGCACACAGAGCCGGGAGCGGGAGCGCAGCCGTGGCAGGAGCCTGGAACGGGGCCTGGACCAGGAAGACTATGGGCGCAGCCGTGAGCGCAGCCGTGGCCGGAGCCTGGAGCGCGGGCTGGACCGCGACTTT------GTGTCCAGGGACCACAGCCGTGGCCGTAGCATCGACAGGGACTACGACCGAGACTATGAGCGCTCCTATCACGAAGCTTATGAACCCGACTACGGAGGCGGCTACAGCCCATCATATGACCGTAGAGCCCATCCAGAGACCCGCTATGAACGGAGCCGCAGCCGAGAACACCTACGTTCCCGAAGCCCCAGCCCCGAGTCTAGGTCACGGCATGAACACAAGGGCCAACATGATCCCGACAGGCCCATCGGGGTCCTTCTA------ACCAAAAGC---AAAGCAAATGAAg aatcaagagttttgactaagctggtgcattttaatttttcttttaatcagGCTGTAAAAAGACCATGGAAGGTCAAGGTATCCCCATTGCAGGGCAGCCCCCCTCTAAGTCATGATGGCCGAGGTTTTGAAGTGATTGATGAATTTGATGGCAGAAGTTTCCACAGTGGCCAC------------CGGCACAGTGGTCATGACATGTTGAGTTATAGCTGGGAAGGCAATAGAGAGAGAGGGAGGCCACCTGGCCTTGATCAATGCACACAGAGCCGGGAGCGGGAGCATAGCCATGGGAGGAGCCTAGAACAAGGTTTAGACTGGGAAGATTATGGGCACAGCCATGAACGCAGTCATGGCCGGAGCCTGGAGCGTGGA---GACCATGATTTTGCTTCTGTGTCTAGGGACCATAGCCAGGGTTGCAGCATTGATAGGGACCAC---CGAGACTATGAGCAGTTGGATCACGAGGCTTTTGAGCCTGACTATGGGGGTGGTTATTGCCCATCGTATGACCGAAGGGCTCATCTTGAAACCCGCTATGAACGCACCCATAGCCGAGAACACCTACTTTCACGAAGCCCAAGTGCTGATTCAAGGTCACAGCATGAATACAAGGGTCAACATGATCCAGACAGC---ATAGGGGTCCTTCTTACCAAGATTAAAAGTGAGGAAGCAAATGAGggtatgagcataacggaatatgatacaataacacatcatgtcccattttct Alignment from CESAR GTGGTCAAGAGACCCCGGAAGGTTCAGGTGGCCCCACTGCAAGGCAGCCCCCCTCTCAGTCATGACGACCGAGGTTTTGAAGTGATTGAAGAATTTGATGGCAGAAGTTTCCGCAGCGGCTACAGTGAGAGGAGTCGGCACAGCAGCCACGACATGCTCAGCCACAGCTGGGAGGGCAATAGGGAGAGGGGGCGACCC---------CATCAGCGCACACAGAGCCGGGAGCGGGAGCGCAGCCGTGGCAGGAGCCTGGAACGGGGCCTGGACCAGGAAGACTATGGGCGCAGCCGTGAGCGCAGCCGTGGCCGGAGCCTGGAGCGCGGGCTGGACCGCGACTTT------GTGTCCAGGGACCACAGCCGTGGCCGTAGCATCGACAGGGACTACGACCGAGACTATGAGCGCTCCTATCACGAAGCTTATGAACCCGACTACGGAGGCGGCTACAGCCCATCATATGACCGTAGAGCCCATCCAGAGACCCGCTATGAACGGAGCCGCAGCCGAGAACACCTACGTTCCCGAAGCCCCAGCCCCGAGTCTAGGTCACGGCATGAACACAAGGGCCAACATGATCCCGACAGGCCCATCGGGGTCCTTCTAACCAAAAGCAAA---------GCAAATGAAg aatcaagagttttgactaagctggtgcattttaatttttcttttaatcagGCTGTAAAAAGACCATGGAAGGTCAAGGTATCCCCATTGCAGGGCAGCCCCCCTCTAAGTCATGATGGCCGAGGTTTTGAAGTGATTGATGAATTTGATGGCAGAAGTTTCCACAGTGGCCAC------------CGGCACAGTGGTCATGACATGTTGAGTTATAGCTGGGAAGGCAATAGAGAGAGAGGGAGGCCACCTGGCCTTGATCAATGCACACAGAGCCGGGAGCGGGAGCATAGCCATGGGAGGAGCCTAGAACAAGGTTTAGACTGGGAAGATTATGGGCACAGCCATGAACGCAGTCATGGCCGGAGCCTGGAGCGTGGA---GACCATGATTTTGCTTCTGTGTCTAGGGACCATAGCCAGGGTTGCAGCATTGATAGGGACCAC---CGAGACTATGAGCAGTTGGATCACGAGGCTTTTGAGCCTGACTATGGGGGTGGTTATTGCCCATCGTATGACCGAAGGGCTCATCTTGAAACCCGCTATGAACGCACCCATAGCCGAGAACACCTACTTTCACGAAGCCCAAGTGCTGATTCAAGGTCACAGCATGAATACAAGGGTCAACATGATCCAGACAGC---ATAGGGGTCCTTCTTACCAAGATTAAAAGTGAGGAAGCAAATGAGggtatgagcataacggaatatgatacaataacacatcatgtcccattttct Alignment from Spaln_aa2Genome GTGGTCAAGAGACCCCGGAAGGTTCAGGTGGCCCCACTGCAAGGCAGCCCCCCTCTCAGTCATGACGACCGAGGTTTTGAAGTGATTGAAGAATTTGATGGCAGAAGTTTCCGCAGCGGCTACAGTGAGAGGAGTCGGCACAGCAGCCACGACATGCTCAGCCACAGCTGGGAGGGCAATAGGGAGAGGGGGCGACCC---------CATCAGCGCACACAGAGCCGGGAGCGGGAGCGCAGCCGTGGCAGGAGCCTGGAACGGGGCCTGGACCAGGAAGACTATGGGCGCAGCCGTGAGCGCAGCCGTGGCCGGAGCCTGGAGCGCGGGCTGGACCGCGACTTTGTGTCCAGGGACCACAGCCGTGGCCGTAGCATCGACAGGGACTACGACCGAGACTATGAGCGCTCCTATCACGAAGCTTATGAACCCGACTACGGAGGCGGCTACAGCCCATCATATGACCGTAGAGCCCATCCAGAGACCCGCTATGAACGGAGCCGCAGCCGAGAACACCTACGTTCCCGAAGCCCCAGCCCCGAGTCTAGGTCACGGCATGAACACAAGGGCCAACATGATCCCGACAGGCCCATCGGGGTCCTTCTAACCAAAAGCAAA---------GCAAATGAAG aatcaagagttttgactaagctggtgcattttaatttttcttttaatcagGCTGTAAAAAGACCATGGAAGGTCAAGGTATCCCCATTGCAGGGCAGCCCCCCTCTAAGTCATGATGGCCGAGGTTTTGAAGTGATTGATGAATTTGATGGCAGAAGTTTCCACAGTGGCCAC------------CGGCACAGTGGTCATGACATGTTGAGTTATAGCTGGGAAGGCAATAGAGAGAGAGGGAGGCCACCTGGCCTTGATCAATGCACACAGAGCCGGGAGCGGGAGCATAGCCATGGGAGGAGCCTAGAACAAGGTTTAGACTGGGAAGATTATGGGCACAGCCATGAACGCAGTCATGGCCGGAGCCTGGAGCGTGGAGACCATGATTTTGCTTCTGTGTCTAGGGACCATAGCCAGGGTTGCAGCATTGATAGGGACCACCGAGACTATGAGCAGTTGGATCACGAGGCTTTTGAGCCTGACTATGGGGGTGGTTATTGCCCATCGTATGACCGAAGGGCTCATCTTGAAACCCGCTATGAACGCACCCATAGCCGAGAACACCTACTTTCACGAAGCCCAAGTGCTGATTCAAGGTCACAGCATGAATACAAGGGTCAACATGATCCAGAC---AGCATAGGGGTCCTTCTTACCAAGATTAAAAGTGAGGAAGCAAATGAGGgtatgagcataacggaatatgatacaataacacatcatgtcccattttct Alignment from Spaln_nt2Genome GTGGTCAAGAGACCCCGGAAGGTTCAGGTGGCCCCACTGCAAGGCAGCCCCCCTCTCAGTCATGACGACCGAGGTTTTGAAGTGATTGAAGAATTTGATGGCAGAAGTTTCCGCAGCGGCTACAGTGAGAGGAGTCGGCACAGCAGCCACGACATGCTCAGCCACAGCTGGGAGGGCAATAGGGAGAGGGGGCGACCCC---------ATCAGCGCACACAGAGCCGGGAGCGGGAGCGCAGCCGTGGCAGGAGCCTGGAACGGGGCCTGGACCAGGAAGACTATGGGCGCAGCCGTGAGCGCAGCCGTGGCCGGAGCCTGGAGCGCGGGCTGGACCGCGACTTTG------TGTCCAGGGACCACAGCCGTGGCCGTAGCATCGACAGGGACTACGACCGAGACTATGAGCGCTCCTATCACGAAGCTTATGAACCCGACTACGGAGGCGGCTACAGCCCATCATATGACCGTAGAGCCCATCCAGAGACCCGCTATGAACGGAGCCGCAGCCGAGAACACCTACGTTCCCGAAGCCCCAGCCCCGAGTCTAGGTCACGGCATGAACACAAGGGCCAACATGATCCCGACAGGCCCATCGGGGTCCTTCTAACCAAAAGCAAA---------GCAAATGAAG aatcaagagttttgactaagctggtgcattttaatttttcttttaatcagGCTGTAAAAAGACCATGGAAGGTCAAGGTATCCCCATTGCAGGGCAGCCCCCCTCTAAGTCATGATGGCCGAGGTTTTGAAGTGATTGATGAATTTGATGGCAGAAGTTTCCACAGTGGCCAC------------CGGCACAGTGGTCATGACATGTTGAGTTATAGCTGGGAAGGCAATAGAGAGAGAGGGAGGCCACCTGGCCTTGATCAATGCACACAGAGCCGGGAGCGGGAGCATAGCCATGGGAGGAGCCTAGAACAAGGTTTAGACTGGGAAGATTATGGGCACAGCCATGAACGCAGTCATGGCCGGAGCCTGGAGCGTGG---AGACCATGATTTTGCTTCTGTGTCTAGGGACCATAGCCAGGGTTGCAGCATTGATAGGG---ACCACCGAGACTATGAGCAGTTGGATCACGAGGCTTTTGAGCCTGACTATGGGGGTGGTTATTGCCCATCGTATGACCGAAGGGCTCATCTTGAAACCCGCTATGAACGCACCCATAGCCGAGAACACCTACTTTCACGAAGCCCAAGTGCTGATTCAAGGTCACAGCATGAATACAAGGGTCAACATGATCCAGACAG---CATAGGGGTCCTTCTTACCAAGATTAAAAGTGAGGAAGCAAATGAGGgtatgagcataacggaatatgatacaataacacatcatgtcccattttct Alignment from Pairagon GTGGTCAAGAGACCCCGGAAGGTTCAGGTGGCCCCACTGCAAGGCAGCCCCCCTCTCAGTCATGACGACCGAGGTTTTGAAGTGATTGAAGAATTTGATGGCAGAAGTTTCCGCAGCGGCTACAGTGAGAGGAGTCGGCACAGCAGCCACGACATGCTCAGCCACAGCTGGGAGGGCAATAGGGAGAGGGGGCGACCCC---------ATCAGCGCACACAGAGCCGGGAGCGGGAGCGCAGCCGTGGCAGGAGCCTGGAACGGGGCCTGGACCAGGAAGACTATGGGCGCAGCCGTGAGCGCAGCCGTGGCCGGAGCCTGGAGCGCGG-------------GCTGGACCGCGACTTTGTGTCCAGGGACCACAGCCGTGGCCGTAGCATCGACAGGGACTACGACCGAGACTATGAGCGCTCCTATCACGAAGCTTATGAACCCGACTACGGAGGCGGCTACAGCCCATCATATGACCGTAGAGCCCATCCAGAGACCCGCTATGAACGGAGCCGCAGCCGAGAACACCTACGTTCCCGAAGCCCCAGCCCCGAGTCTAGGTCACGGCATGAACACAAGGGCCAACATGATCCCGACAGGCCCATCGGGGTCCTTCTAACCAAAAGCA---------AAGCAAATGAAG aatcaagagttttgactaagctggtgcattttaatttttcttttaatcagGCTGTAAAAAGACCATGGAAGGTCAAGGTATCCCCATTGCAGGGCAGCCCCCCTCTAAGTCATGATGGCCGAGGTTTTGAAGTGATTGATGAATTTGATGGCAGAAGTTTCCACAGTGGCCAC------------CGGCACAGTGGTCATGACATGTTGAGTTATAGCTGGGAAGGCAATAGAGAGAGAGGGAGGCCACCTGGCCTTGATCAATGCACACAGAGCCGGGAGCGGGAGCATAGCCATGGGAGGAGCCTAGAACAAGGTTTAGACTGGGAAGATTATGGGCACAGCCATGAACGCAGTCATGGCCGGAGCCTGGAGCGTGGAGACCATGATTTTGCT----------TCTGTGTCTAGGGACCATAGCCAGGGTTGCAGCATTGATAGGGACC---ACCGAGACTATGAGCAGTTGGATCACGAGGCTTTTGAGCCTGACTATGGGGGTGGTTATTGCCCATCGTATGACCGAAGGGCTCATCTTGAAACCCGCTATGAACGCACCCATAGCCGAGAACACCTACTTTCACGAAGCCCAAGTGCTGATTCAAGGTCACAGCATGAATACAAGGGTCAACATGATCCAGACAG---CATAGGGGTCCTTCTTACCAAGATTAAAAGTGAGGAAGCAAATGAGGgtatgagcataacggaatatgatacaataacacatcatgtcccattttct Alignment from Exonerate_protein2genome GTGGTCAAGAGACCCCGGAAGGTTCAGGTGGCCCCACTGCAAGGCAGCCCCCCTCTCAGTCATGACGACCGAGGTTTTGAAGTGATTGAAGAATTTGATGGCAGAAGTTTCCGCAGCGGCTACAGTGAGAGGAGTCGGCACAGCAGCCACGACATGCTCAGCCACAGCTGGGAGGGCAATAGGGAGAGGGGGCGACCC---------CATCAGCGCACACAGAGCCGGGAGCGGGAGCGCAGCCGTGGCAGGAGCCTGGAACGGGGCCTGGACCAGGAAGACTATGGGCGCAGCCGTGAGCGCAGCCGTGGCCGGAGCCTGGAGCGCGGG---CTGGACCGCGACTTTGTGTCCAGGGACCACAGCCGTGGCCGTAGCATCGACAGGGACTACGACCGAGACTATGAGCGCTCCTATCACGAAGCTTATGAACCCGACTACGGAGGCGGCTACAGCCCATCATATGACCGTAGAGCCCATCCAGAGACCCGCTATGAACGGAGCCGCAGCCGAGAACACCTACGTTCCCGAAGCCCCAGCCCCGAGTCTAGGTCACGGCATGAACACAAGGGCCAACATGATCCCGACAGGCCCATCGGGGTCCTTCTAACCAAAAGCAAAGCAAATGAAG aatcaagagttttgactaagctggtgcattttaatttttcttttaatcagGCTGTAAAAAGACCATGGAAGGTCAAGGTATCCCCATTGCAGGGCAGCCCCCCTCTAAGTCATGATGGCCGAGGTTTTGAAGTGATTGATGAATTTGATGGCAGAAGTTTCCACAGTGGCCAC------------CGGCACAGTGGTCATGACATGTTGAGTTATAGCTGGGAAGGCAATAGAGAGAGAGGGAGGCCACCTGGCCTTGATCAATGCACACAGAGCCGGGAGCGGGAGCATAGCCATGGGAGGAGCCTAGAACAAGGTTTAGACTGGGAAGATTATGGGCACAGCCATGAACGCAGTCATGGCCGGAGCCTGGAGCGTGGAGACCATGATTTTGCTTCTGTGTCTAGGGACCATAGCCAGGGTTGCAGCATTGATAGGGACCAC---CGAGACTATGAGCAGTTGGATCACGAGGCTTTTGAGCCTGACTATGGGGGTGGTTATTGCCCATCGTATGACCGAAGGGCTCATCTTGAAACCCGCTATGAACGCACCCATAGCCGAGAACACCTACTTTCACGAAGCCCAAGTGCTGATTCAAGGTCACAGCATGAATACAAGGGTCAACATGATCCAGAC---AGCATAGGGGTCCTTCTTACCAAGATTAAAAGTGAGGAAGcaaatgagggtatgagcataacggaatatgatacaataacacatcatgtcccattttct Alignment from Exonerate_coding2genome aatcaagagttttgactaagctggtgcattttaatttttcttttaatcaggctgtaaaaagaccatggaaggtcaaggtatccccattgcagggcagcccccctctaagtcatgatggccgaggttttgaagtgattgatgaatttgatggcagaagtttccacagtggccaccggcacagtggtcatgacatgttgagttatagctgggaaggcaatagagagagagggaggccacctggccttgatcaatgcacacagagccgggagcgggagcatagccatgggaggagcctagaacaaggtttagactgggaagattatgggcacagccatgaacgcagtcatggccggagcctggagcgtggagaccatgattttgcttctgtgtctagggaccatagccagggttgcagcattgatagggaccaccgagactatgagcagttggatcacgaggcttttgagcctgactatgggggtggttattgcccatcgtatgaccgaagggctcatcttgaaacccgctatgaacgcacccatagccgagaacacctactttcacgaagcccaagtgctgattcaaggtcacagcatgaatacaagggtcaacatgatccagacagcataggggtccttcttaccaagattaaaagtgaggaagcaaatgagggtatgagcataacggaatatgatacaataacacatcatgtcccattttct Alignment from GeneWise GTGGTCAAGAGACCCCGGAAGGTTCAGGTGGCCCCACTGCAAGGCAGCCCCCCTCTCAGTCATGACGACCGAGGTTTTGAAGTGATTGAAGAATTTGATGGCAGAAGTTTCCGCAGCGGCTACAGTGAGAGGAGTCGGCACAGCAGCCACGACATGCTCAGCCACAGCTGGGAGGGCAATAGGGAGAGGGGGCGACCC---------CATCAGCGCACACAGAGCCGGGAGCGGGAGCGCAGCCGTGGCAGGAGCCTGGAACGGGGCCTGGACCAGGAAGACTATGGGCGCAGCCGTGAGCGCAGCCGTGGCCGGAGCCTGGAGCGCGGGCTGGACCGCGACTTT------GTGTCCAGGGACCACAGCCGTGGCCGTAGCATCGACAGGGACTACGACCGAGACTATGAGCGCTCCTATCACGAAGCTTATGAACCCGACTACGGAGGCGGCTACAGCCCATCATATGACCGTAGAGCCCATCCAGAGACCCGCTATGAACGGAGCCGCAGCCGAGAACACCTACGTTCCCGAAGCCCCAGCCCCGAGTCTAGGTCACGGCATGAACACAAGGGCCAACATGATCCCGACAGGCCCATCGGGGTCCTTCTAACCAAAAGCAAA---------GCAAATGAAG aatcaagagttttgactaagctggtgcattttaatttttcttttaatcagGCTGTAAAAAGACCATGGAAGGTCAAGGTATCCCCATTGCAGGGCAGCCCCCCTCTAAGTCATGATGGCCGAGGTTTTGAAGTGATTGATGAATTTGATGGCAGAAGTTTCCACAGTGGCCAC------------CGGCACAGTGGTCATGACATGTTGAGTTATAGCTGGGAAGGCAATAGAGAGAGAGGGAGGCCACCTGGCCTTGATCAATGCACACAGAGCCGGGAGCGGGAGCATAGCCATGGGAGGAGCCTAGAACAAGGTTTAGACTGGGAAGATTATGGGCACAGCCATGAACGCAGTCATGGCCGGAGCCTGGAGCGTGGA---GACCATGATTTTGCTTCTGTGTCTAGGGACCATAGCCAGGGTTGCAGCATTGATAGGGACCAC---CGAGACTATGAGCAGTTGGATCACGAGGCTTTTGAGCCTGACTATGGGGGTGGTTATTGCCCATCGTATGACCGAAGGGCTCATCTTGAAACCCGCTATGAACGCACCCATAGCCGAGAACACCTACTTTCACGAAGCCCAAGTGCTGATTCAAGGTCACAGCATGAATACAAGGGTCAACATGATCCAGACAGC---ATAGGGGTCCTTCTTACCAAGATTAAAAGTGAGGAAGCAAATGAGGgtatgagcataacggaatatgatacaataacacatcatgtcccattttct #### Tjp2_ID5284_3 --> 0 - 2 Original Alignment GATTCCAAAAGAGGATTTGGAATTGCCGTGTCGGGAGGCAGAGACAACCCCCACTTTGAAAATGGGGAGACGTCAATCGTCATCTCAGATGTGCTCCCAGGTGGACCCGCTGATGGCTTGCTTca ctccttcagttcttatgtcttctccacaactggacatctttgctccccagGATTCCAGGAAAGGATTCAGGATTGCTGTTTCGGGTGGAAAAGACAACCCTCACCTTGAAAATGGGGAGGCATCAATTGTCATCTCAGATGTGCTA---------CCTGCTGATGGCTTACTCaagtaagtcaaccactgtgtgtgcaccttttgggttcccacctgatagcctt Alignment from CESAR GATTCCAAAAGAGGATTTGGAATTGCCGTGTCGGGAGGCAGAGACAACCCCCACTTTGAAAATGGGGAGACGTCAATCGTCATCTCAGATGTGCTCCCAGGTGGACCCGCTGATGGCTTGCTTca ctccttcagttcttatgtcttctccacaactggacatctttgctccccagGATTCCAGGAAAGGATTCAGGATTGCTGTTTCGGGTGGAAAAGACAACCCTCACCTTGAAAATGGGGAGGCATCAATTGTCATCTCAGATGTGCTA---------CCTGCTGATGGCTTACTCaagtaagtcaaccactgtgtgtgcaccttttgggttcccacctgatagcctt Alignment from Spaln_aa2Genome GATTCCAAAAGAGGATTTGGAATTGCCGTGTCGGGAGGCAGAGACAACCCCCACTTTGAAAATGGGGAGACGTCAATCGTCATCTCAGATGTGCTCCCAGGTGGACCCGCTGATGGCTTGCTTCA ctccttcagttcttatgtcttctccacaactggacatctttgctccccagGATTCCAGGAAAGGATTCAGGATTGCTGTTTCGGGTGGAAAAGACAACCCTCACCTTGAAAATGGGGAGGCATCAATTGTCATCTCAGATGTGCTA---------CCTGCTGATGGCTTACTCAAgtaagtcaaccactgtgtgtgcaccttttgggttcccacctgatagcctt Alignment from Spaln_nt2Genome GATTCCAAAAGAGGATTTGGAATTGCCGTGTCGGGAGGCAGAGACAACCCCCACTTTGAAAATGGGGAGACGTCAATCGTCATCTCAGATGTGCTCCCAGGTGGACCCGCTGATGGCTTGCTTCA ctccttcagttcttatgtcttctccacaactggacatctttgctccccagGATTCCAGGAAAGGATTCAGGATTGCTGTTTCGGGTGGAAAAGACAACCCTCACCTTGAAAATGGGGAGGCATCAATTGTCATCTCAGATGTGCT---------ACCTGCTGATGGCTTACTCAAgtaagtcaaccactgtgtgtgcaccttttgggttcccacctgatagcctt Alignment from Pairagon GATTCCAAAAGAGGATTTGGAATTGCCGTGTCGGGAGGCAGAGACAACCCCCACTTTGAAAATGGGGAGACGTCAATCGTCATCTCAGATGTGCTCCCAGGTGGACCCGCTGATGGCTTGCTTCA ctccttcagttcttatgtcttctccacaactggacatctttgctccccagGATTCCAGGAAAGGATTCAGGATTGCTGTTTCGGGTGGAAAAGACAACCCTCACCTTGAAAATGGGGAGGCATCAATTGTCATCTCAGATGTGCT---------ACCTGCTGATGGCTTACTCAAgtaagtcaaccactgtgtgtgcaccttttgggttcccacctgatagcctt Alignment from Exonerate_protein2genome GATTCCAAAAGAGGATTTGGAATTGCCGTGTCGGGAGGCAGAGACAACCCCCACTTTGAAAATGGGGAGACGTCAATCGTCATCTCAGATGTGCTCCCAGGTGGACCCGCTGATGGCTTGCTTCA ctccttcagttcttatgtcttctccacaactggacatctttgctccccagGATTCCAGGAAAGGATTCAGGATTGCTGTTTCGGGTGGAAAAGACAACCCTCACCTTGAAAATGGGGAGGCATCAATTGTCATCTCAGATGTGCTA---------CCTGCTGATGGCTTACTCAAgtaagtcaaccactgtgtgtgcaccttttgggttcccacctgatagcctt Alignment from Exonerate_coding2genome ctccttcagttcttatgtcttctccacaactggacatctttgctccccaggattccaggaaaggattcaggattgctgtttcgggtggaaaagacaaccctcaccttgaaaatggggaggcatcaattgtcatctcagatgtgctacctgctgatggcttactcaagtaagtcaaccactgtgtgtgcaccttttgggttcccacctgatagcctt Alignment from GeneWise GATTCCAAAAGAGGATTTGGAATTGCCGTGTCGGGAGGCAGAGACAACCCCCACTTTGAAAATGGGGAGACGTCAATCGTCATCTCAGATGTGCTCCCAGGTGGACCCGCTGATGGCTTGCTTCA ctccttcagttcttatgtcttctccacaactggacatctttgctccccagGATTCCAGGAAAGGATTCAGGATTGCTGTTTCGGGTGGAAAAGACAACCCTCACCTTGAAAATGGGGAGGCATCAATTGTCATCTCAGATGTGCTACCT---------GCTGATGGCTTACTCAAgtaagtcaaccactgtgtgtgcaccttttgggttcccacctgatagcctt #### Tle4_ID3630_9 --> 0 - 0 Original Alignment AGCTCTTCCGTATCCCCATCAGCCAGTTTCCGGGGTTCTGAGAAACATAGGAACTCTACAGACTATTCCTCAGAGAGCAAAAAGCAGAAAACAGAAGAAAAAGAAATTGCAGCTCGCTAT cacccatctccccttatcttcacatgttcatgtctttctttatcttgcagAGCTCCTCTGTATCCCCATCAGCAAGTTTCAGATGTTCTGAGAAGCAAAGGAACTCTACAGCCTACTCTTCCAAAAGCAAAACACAGGAGATGGAAGAGAAAGAAATTGCAGCTCGTTATgtacaactccccctcactcctttagacaggcggcaaattggacatttgtg Alignment from CESAR AGCTCTTCCGTATCCCCATCAGCCAGTTTCCGGGGTTCTGAGAAACATAGGAACTCTACAGACTATTCCTCAGAGAGCAAAAAGCAGAAAACAGAAGAAAAAGAAATTGCAGCTCGCTAT cacccatctccccttatcttcacatgttcatgtctttctttatcttgcagAGCTCCTCTGTATCCCCATCAGCAAGTTTCAGATGTTCTGAGAAGCAAAGGAACTCTACAGCCTACTCTTCCAAAAGCAAAACACAGGAGATGGAAGAGAAAGAAATTGCAGCTCGTTATgtacaactccccctcactcctttagacaggcggcaaattggacatttgtg Alignment from Spaln_aa2Genome AGCTCTTCCGTATCCCCATCAGCCAGTTTCCGGGGTTCTGAGAAACATAGGAACTCTACAGACTATTCCTCAGAGAGCAAAAAGCAGAAAACAGAAGAAAAAGAAATTGCAGCTCGCTAT cacccatctccccttatcttcacatgttcatgtctttctttatcttgcagAGCTCCTCTGTATCCCCATCAGCAAGTTTCAGATGTTCTGAGAAGCAAAGGAACTCTACAGCCTACTCTTCCAAAAGCAAAACACAGGAGATGGAAGAGAAAGAAATTGCAGCTCGTTATgtacaactccccctcactcctttagacaggcggcaaattggacatttgtg Alignment from Spaln_nt2Genome AGCTCTTCCGTATCCCCATCAGCCAGTTTCCGGGGTTCTGAGAAACATAGGAACTCTACAGACTATTCCTCAGAGAGCAAAAAGCAGAAAACAGAAGAAAAAGAAATTGCAGCTCGCTAT cacccatctccccttatcttcacatgttcatgtctttctttatcttgcagAGCTCCTCTGTATCCCCATCAGCAAGTTTCAGATGTTCTGAGAAGCAAAGGAACTCTACAGCCTACTCTTCCAAAAGCAAAACACAGGAGATGGAAGAGAAAGAAATTGCAGCTCGTTATgtacaactccccctcactcctttagacaggcggcaaattggacatttgtg Alignment from Pairagon AGCTCTTCCGTATCCCCATCAGCCAGTTTCCGGGGTTCTGAGAAACATAGGAACTCTACAGACTATTCCTCAGAGAGCAAAAAGCAGAAAACAGAAGAAAAAGAAATTGCAGCTCGCTAT cacccatctccccttatcttcacatgttcatgtctttctttatcttgcagAGCTCCTCTGTATCCCCATCAGCAAGTTTCAGATGTTCTGAGAAGCAAAGGAACTCTACAGCCTACTCTTCCAAAAGCAAAACACAGGAGATGGAAGAGAAAGAAATTGCAGCTCGTTATgtacaactccccctcactcctttagacaggcggcaaattggacatttgtg Alignment from Exonerate_protein2genome ACAGAGACTCCATCAAGAGCTCTTCCGTATCCCCATCAGCCAGTTTCCGGGGTTCTGAGAAACATAGGAACTCTACAGACTATTCCTCAGAGAGCAAAAAGCAGAAAACAGAAGAAAAAGAAATTGCAGCTCGCTAT cacccatctccccttatcttcacatgttcatgtCTTTCTTTATCTTGCAGAGCTCCTCTGTATCCCCATCAGCAAGTTTCAGATGTTCTGAGAAGCAAAGGAACTCTACAGCCTACTCTTCCAAAAGCAAAACACAGGAGATGGAAGAGAAAGAAATTGCAGCTCGTTATgtacaactccccctcactcctttagacaggcggcaaattggacatttgtg Alignment from Exonerate_coding2genome ACAGAGACTCCATCAAGAGCTCTTCCGTATCCCCATCAGCCAGTTTCCGGGGTTCTGAGAAACATAGGAACTCTACAGACTATTCCTCAGAGAGCAAAAAGCAGAAAACAGAAGAAAAAGAAATTGCAGCTCGCTAT cacccatctccccttatcttcacatgttcatgtCTTTCTTTATCTTGCAGAGCTCCTCTGTATCCCCATCAGCAAGTTTCAGATGTTCTGAGAAGCAAAGGAACTCTACAGCCTACTCTTCCAAAAGCAAAACACAGGAGATGGAAGAGAAAGAAATTGCAGCTCGTTATgtacaactccccctcactcctttagacaggcggcaaattggacatttgtg Alignment from GeneWise ----TCCGTATCCCCATCAGCCAGTTTCCGGGGTTCTGAGAAACATAGGAACTCTACAGACTATTCCTCAGAGAGCAAAAAGCAGAAAACAGAAGAAAAAGAAATTGCAGCTCGCTAT cacccatctccccttatcttcacatgttcatgtctttctttatcttgcagagCTCCTCTGTATCCCCATCAGCAAGTTTCAGATGTTCTGAGAAGCAAAGGAACTCTACAGCCTACTCTTCCAAAAGCAAAACACAGGAGATGGAAGAGAAAGAAATTGCAGCTCGTTATgtacaactccccctcactcctttagacaggcggcaaattggacatttgtg #### Tle4_ID3668_5 --> 0 - 0 Original Alignment GCAGAGATTGTTAAACGACTAAATGCTATCTGTGCACAGGTCATTCCTTTCCTGTCCCAAGAG attctactgctggctcacggtcttctggtttggtttctttttgccaacagGCAGAGATCGTCAAGCACCTCAATGCTATTTGTGCACAGGTCATTCCATTCTTATCACAAGATgtaaggttgcagactttaactctaatccttactgagaatgttgattctta Alignment from CESAR GCAGAGATTGTTAAACGACTAAATGCTATCTGTGCACAGGTCATTCCTTTCCTGTCCCAAGAG attctactgctggctcacggtcttctggtttggtttctttttgccaacagGCAGAGATCGTCAAGCACCTCAATGCTATTTGTGCACAGGTCATTCCATTCTTATCACAAGATgtaaggttgcagactttaactctaatccttactgagaatgttgattctta Alignment from Spaln_aa2Genome GCAGAGATTGTTAAACGACTAAATGCTATCTGTGCACAGGTCATTCCTTTCCTGTCCCAAGAG attctactgctggctcacggtcttctggtttggtttctttttgccaacagGCAGAGATCGTCAAGCACCTCAATGCTATTTGTGCACAGGTCATTCCATTCTTATCACAAGATgtaaggttgcagactttaactctaatccttactgagaatgttgattctta Alignment from Spaln_nt2Genome GCAGAGATTGTTAAACGACTAAATGCTATCTGTGCACAGGTCATTCCTTTCCTGTCCCAAGAG attctactgctggctcacggtcttctggtttggtttctttttgccaacagGCAGAGATCGTCAAGCACCTCAATGCTATTTGTGCACAGGTCATTCCATTCTTATCACAAGATgtaaggttgcagactttaactctaatccttactgagaatgttgattctta Alignment from Pairagon GCAGAGATTGTTAAACGACTAAATGCTATCTGTGCACAGGTCATTCCTTTCCTGTCCCAAGAG attctactgctggctcacggtcttctggtttggtttctttttgccaacagGCAGAGATCGTCAAGCACCTCAATGCTATTTGTGCACAGGTCATTCCATTCTTATCACAAGATgtaaggttgcagactttaactctaatccttactgagaatgttgattctta Alignment from Exonerate_protein2genome GCAGAGATTGTTAAACGACTAAATGCTATCTGTGCACAGGTCATTCCTTTCCTGTCCCAAGAG attctactgctggctcacggtcttctggtttggtttctttttgccaacagGCAGAGATCGTCAAGCACCTCAATGCTATTTGTGCACAGGTCATTCCATTCTTATCACAAGATgtaaggttgcagactttaactctaatccttactgagaatgttgattctta Alignment from Exonerate_coding2genome GCAGAGATTGTTAAACGACTAAATGCTATCTGTGCACAGGTCATTCCTTTCCTGTCCCAAGAG attctactgctggctcacggtcttctggtttggtttctttttgccaacagGCAGAGATCGTCAAGCACCTCAATGCTATTTGTGCACAGGTCATTCCATTCTTATCACAAGATgtaaggttgcagactttaactctaatccttactgagaatgttgattctta Alignment from GeneWise GCAGAGATTGTTAAACGACTAAATGCTATCTGTGCACAGGTCATTCCTTTCCTGTCCCAAGAG attctactgctggctcacggtcttctggtttggtttctttttgccaacagGCAGAGATCGTCAAGCACCTCAATGCTATTTGTGCACAGGTCATTCCATTCTTATCACAAGATgtaaggttgcagactttaactctaatccttactgagaatgttgattctta #### Tll2_ID8107_13 --> 0 - 1 Original Alignment ATCGAAAGGCATGACAGTTGTGCATATGACTATCTGGAAATCCGAGACGGTCCCACAGAGGACAGCACCCTGATTGGCCACTTCTGTGGCTACGAGAAGCCGGAGGCCGTGAAATCCAGCGCTAACCGACTGTGGGTGAAGTTTGTGTCCGACGGCTCCATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAGg caaccacaactggcccagtgtgataaactctgtgcttccttctgttctagATTGAAAGGCATGACAGTTGTGCATATGATTACCTGGAAATACGAGATGGTCCCACAGAAGATAGCACTCTGATAGGCCACTTCTGTGGCTATGAGAAGCCTGAGGCTGTCAAATCTAGTGCTAACCGGCTATGGGTGAAGTTTGTGTCTGATGGCTCCATCAACAAAGCAGGTTTTGCAGCCAATTTCTTTGAGggtaagcacatgcactctctcatataagccctactcctttatctaactagg Alignment from CESAR ATCGAAAGGCATGACAGTTGTGCATATGACTATCTGGAAATCCGAGACGGTCCCACAGAGGACAGCACCCTGATTGGCCACTTCTGTGGCTACGAGAAGCCGGAGGCCGTGAAATCCAGCGCTAACCGACTGTGGGTGAAGTTTGTGTCCGACGGCTCCATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAGg caaccacaactggcccagtgtgataaactctgtgcttccttctgttctagATTGAAAGGCATGACAGTTGTGCATATGATTACCTGGAAATACGAGATGGTCCCACAGAAGATAGCACTCTGATAGGCCACTTCTGTGGCTATGAGAAGCCTGAGGCTGTCAAATCTAGTGCTAACCGGCTATGGGTGAAGTTTGTGTCTGATGGCTCCATCAACAAAGCAGGTTTTGCAGCCAATTTCTTTGAGggtaagcacatgcactctctcatataagccctactcctttatctaactagg Alignment from Spaln_aa2Genome ATCGAAAGGCATGACAGTTGTGCATATGACTATCTGGAAATCCGAGACGGTCCCACAGAGGACAGCACCCTGATTGGCCACTTCTGTGGCTACGAGAAGCCGGAGGCCGTGAAATCCAGCGCTAACCGACTGTGGGTGAAGTTTGTGTCCGACGGCTCCATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAGG caaccacaactggcccagtgtgataaactctgtgcttccttctgttctagATTGAAAGGCATGACAGTTGTGCATATGATTACCTGGAAATACGAGATGGTCCCACAGAAGATAGCACTCTGATAGGCCACTTCTGTGGCTATGAGAAGCCTGAGGCTGTCAAATCTAGTGCTAACCGGCTATGGGTGAAGTTTGTGTCTGATGGCTCCATCAACAAAGCAGGTTTTGCAGCCAATTTCTTTGAGGgtaagcacatgcactctctcatataagccctactcctttatctaactagg Alignment from Spaln_nt2Genome ATCGAAAGGCATGACAGTTGTGCATATGACTATCTGGAAATCCGAGACGGTCCCACAGAGGACAGCACCCTGATTGGCCACTTCTGTGGCTACGAGAAGCCGGAGGCCGTGAAATCCAGCGCTAACCGACTGTGGGTGAAGTTTGTGTCCGACGGCTCCATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAGG caaccacaactggcccagtgtgataaactctgtgcttccttctgttctagATTGAAAGGCATGACAGTTGTGCATATGATTACCTGGAAATACGAGATGGTCCCACAGAAGATAGCACTCTGATAGGCCACTTCTGTGGCTATGAGAAGCCTGAGGCTGTCAAATCTAGTGCTAACCGGCTATGGGTGAAGTTTGTGTCTGATGGCTCCATCAACAAAGCAGGTTTTGCAGCCAATTTCTTTGAGGgtaagcacatgcactctctcatataagccctactcctttatctaactagg Alignment from Pairagon ATCGAAAGGCATGACAGTTGTGCATATGACTATCTGGAAATCCGAGACGGTCCCACAGAGGACAGCACCCTGATTGGCCACTTCTGTGGCTACGAGAAGCCGGAGGCCGTGAAATCCAGCGCTAACCGACTGTGGGTGAAGTTTGTGTCCGACGGCTCCATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAGG caaccacaactggcccagtgtgataaactctgtgcttccttctgttctagATTGAAAGGCATGACAGTTGTGCATATGATTACCTGGAAATACGAGATGGTCCCACAGAAGATAGCACTCTGATAGGCCACTTCTGTGGCTATGAGAAGCCTGAGGCTGTCAAATCTAGTGCTAACCGGCTATGGGTGAAGTTTGTGTCTGATGGCTCCATCAACAAAGCAGGTTTTGCAGCCAATTTCTTTGAGGgtaagcacatgcactctctcatataagccctactcctttatctaactagg Alignment from Exonerate_protein2genome ATCGAAAGGCATGACAGTTGTGCATATGACTATCTGGAAATCCGAGACGGTCCCACAGAGGACAGCACCCTGATTGGCCACTTCTGTGGCTACGAGAAGCCGGAGGCCGTGAAATCCAGCGCTAACCGACTGTGGGTGAAGTTTGTGTCCGACGGCTCCATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAGG caaccacaactggcccagtgtgataaactctgtgcttccttctgttctagATTGAAAGGCATGACAGTTGTGCATATGATTACCTGGAAATACGAGATGGTCCCACAGAAGATAGCACTCTGATAGGCCACTTCTGTGGCTATGAGAAGCCTGAGGCTGTCAAATCTAGTGCTAACCGGCTATGGGTGAAGTTTGTGTCTGATGGCTCCATCAACAAAGCAGGTTTTGCAGCCAATTTCTTTGAGGgtaagcacatgcactctctcatataagccctactcctttatctaactagg Alignment from Exonerate_coding2genome CTTACCTTCCAGTCCTTCGAGATCGAAAGGCATGACAGTTGTGCATATGACTATCTGGAAATCCGAGACGGTCCCACAGAGGACAGCACCCTGATTGGCCACTTCTGTGGCTACGAGAAGCCGGAGGCCGTGAAATCCAGCGCTAACCGACTGTGGGTGAAGTTTGTGTCCGACGGCTCCATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAGG caaccacaactggcccagtgtgataaactCTGTGCTTCCTTCTGTTCTAGATTGAAAGGCATGACAGTTGTGCATATGATTACCTGGAAATACGAGATGGTCCCACAGAAGATAGCACTCTGATAGGCCACTTCTGTGGCTATGAGAAGCCTGAGGCTGTCAAATCTAGTGCTAACCGGCTATGGGTGAAGTTTGTGTCTGATGGCTCCATCAACAAAGCAGGTTTTGCAGCCAATTTCTTTGAGGgtaagcacatgcactctctcatataagccctactcctttatctaactagg Alignment from GeneWise ATCGAAAGGCATGACAGTTGTGCATATGACTATCTGGAAATCCGAGACGGTCCCACAGAGGACAGCACCCTGATTGGCCACTTCTGTGGCTACGAGAAGCCGGAGGCCGTGAAATCCAGCGCTAACCGACTGTGGGTGAAGTTTGTGTCCGACGGCTCCATCAATAAAGCGGGCTTTGCAGCCAATTTCTTCAAGG caaccacaactggcccagtgtgataaactctgtgcttccttctgttctagATTGAAAGGCATGACAGTTGTGCATATGATTACCTGGAAATACGAGATGGTCCCACAGAAGATAGCACTCTGATAGGCCACTTCTGTGGCTATGAGAAGCCTGAGGCTGTCAAATCTAGTGCTAACCGGCTATGGGTGAAGTTTGTGTCTGATGGCTCCATCAACAAAGCAGGTTTTGCAGCCAATTTCTTTGAGGgtaagcacatgcactctctcatataagccctactcctttatctaactagg #### Tll2_ID8119_7 --> 2 - 2 Original Alignment gtCAGGAGTATAATTTCTTAAAAATGGAAGCCGGCGAGGTGAGCTCTCTGGGAGAGACCTACGACTTCGACAGCATCATGCACTATGCCCGGAACACCTTCTCAag ccacaatggcaaacttgttcctgtgacagtcttattttgtgtttgctcaggtCAGGAGTATAATTTCTTAAAAATGGAAGCTGGTGAGGTAAGCTCTCTGGGAGAGACCTATGACTTTGACAGCATCATGCACTATGCCCGGAACACCTTCTCAaggtaaaactggtgagtaactagtaaatccaatacctcttctcagaaaaagt Alignment from CESAR gtCAGGAGTATAATTTCTTAAAAATGGAAGCCGGCGAGGTGAGCTCTCTGGGAGAGACCTACGACTTCGACAGCATCATGCACTATGCCCGGAACACCTTCTCAag ccacaatggcaaacttgttcctgtgacagtcttattttgtgtttgctcaggtCAGGAGTATAATTTCTTAAAAATGGAAGCTGGTGAGGTAAGCTCTCTGGGAGAGACCTATGACTTTGACAGCATCATGCACTATGCCCGGAACACCTTCTCAaggtaaaactggtgagtaactagtaaatccaatacctcttctcagaaaaagt Alignment from Spaln_aa2Genome GTCAGGAGTATAATTTCTTAAAAATGGAAGCCGGCGAGGTGAGCTCTCTGGGAGAGACCTACGACTTCGACAGCATCATGCACTATGCCCGGAACACCTTCTCAAG ccacaatggcaaacttgttcctgtgacagtcttattttgtgtttgctcagGTCAGGAGTATAATTTCTTAAAAATGGAAGCTGGTGAGGTAAGCTCTCTGGGAGAGACCTATGACTTTGACAGCATCATGCACTATGCCCGGAACACCTTCTCAAGgtaaaactggtgagtaactagtaaatccaatacctcttctcagaaaaagt Alignment from Spaln_nt2Genome GTCAGGAGTATAATTTCTTAAAAATGGAAGCCGGCGAGGTGAGCTCTCTGGGAGAGACCTACGACTTCGACAGCATCATGCACTATGCCCGGAACACCTTCTCAAG ccacaatggcaaacttgttcctgtgacagtcttattttgtgtttgctcagGTCAGGAGTATAATTTCTTAAAAATGGAAGCTGGTGAGGTAAGCTCTCTGGGAGAGACCTATGACTTTGACAGCATCATGCACTATGCCCGGAACACCTTCTCAAGgtaaaactggtgagtaactagtaaatccaatacctcttctcagaaaaagt Alignment from Pairagon GTCAGGAGTATAATTTCTTAAAAATGGAAGCCGGCGAGGTGAGCTCTCTGGGAGAGACCTACGACTTCGACAGCATCATGCACTATGCCCGGAACACCTTCTCAAG ccacaatggcaaacttgttcctgtgacagtcttattttgtgtttgctcagGTCAGGAGTATAATTTCTTAAAAATGGAAGCTGGTGAGGTAAGCTCTCTGGGAGAGACCTATGACTTTGACAGCATCATGCACTATGCCCGGAACACCTTCTCAAGgtaaaactggtgagtaactagtaaatccaatacctcttctcagaaaaagt Alignment from Exonerate_protein2genome GTCAGGAGTATAATTTCTTAAAAATGGAAGCCGGCGAGGTGAGCTCTCTGGGAGAGACCTACGACTTCGACAGCATCATGCACTATGCCCGGAACACCTTCTCAAG ccacaatggcaaacttgttcctgtgacagtcttattttgtgtttgctcagGTCAGGAGTATAATTTCTTAAAAATGGAAGCTGGTGAGGTAAGCTCTCTGGGAGAGACCTATGACTTTGACAGCATCATGCACTATGCCCGGAACACCTTCTCAAGgtaaaactggtgagtaactagtaaatccaatacctcttctcagaaaaagt Alignment from Exonerate_coding2genome ccacaatggcaaacttgttcctgtgacagtcttattttgtgtttgctcaggtcaggagtataatttcttaaaaatggaagctggtgaggtaagctctctgggagagacctatgactttgacagcatcatgcactatgcccggaacaccttctcaaggtaaaactggtgagtaactagtaaatccaatacctcttctcagaaaaagt Alignment from GeneWise GTCAGGAGTATAATTTCTTAAAAATGGAAGCCGGCGAGGTGAGCTCTCTGGGAGAGACCTACGACTTCGACAGCATCATGCACTATGCCCGGAACACCTTCTCAAG ccacaatggcaaacttgttcctgtgacagtcttattttgtgtttgctcagGTCAGGAGTATAATTTCTTAAAAATGGAAGCTGGTGAGGTAAGCTCTCTGGGAGAGACCTATGACTTTGACAGCATCATGCACTATGCCCGGAACACCTTCTCAAGgtaaaactggtgagtaactagtaaatccaatacctcttctcagaaaaagt #### Tm9sf3_ID8143_7 --> 0 - 2 Original Alignment GACAGAGACCTAGGAGACGAGTATGGCTGGAAGCAGGTGCATGGAGATGTGTTCAGACCGTCAAGTCACCCTCTGATCTTCTCCTCCCTCATTGGCTCTGGATGTCAGATATTTGCTGTGTCTCTCATTGTTATTATTGTTGCCATGATAGAGGACTTATATACAga tatcaggggccttgtgagtattaaccttagtttgtcgttttttcttgtagGACAGAGACCTTGGAGATAAGTATGGCTGGAAACAAGTACATGGAGATGTATTCAGACCATCAAGTCATCCTCTGATTTTCTCATCATTAATTGGTTCAGGATGTCAGATATTTGCTGTATCCCTCATCGTTATTATTGTAGCCATGATAGAGGACTTGTATACTgagtaaccaggtgacctgtgataatcaccagctaaatggtctcattgaccaa Alignment from CESAR GACAGAGACCTAGGAGACGAGTATGGCTGGAAGCAGGTGCATGGAGATGTGTTCAGACCGTCAAGTCACCCTCTGATCTTCTCCTCCCTCATTGGCTCTGGATGTCAGATATTTGCTGTGTCTCTCATTGTTATTATTGTTGCCATGATAGAGGACTTATATACAga tatcaggggccttgtgagtattaaccttagtttgtcgttttttcttgtagGACAGAGACCTTGGAGATAAGTATGGCTGGAAACAAGTACATGGAGATGTATTCAGACCATCAAGTCATCCTCTGATTTTCTCATCATTAATTGGTTCAGGATGTCAGATATTTGCTGTATCCCTCATCGTTATTATTGTAGCCATGATAGAGGACTTGTATACTgagtaaccaggtgacctgtgataatcaccagctaaatggtctcattgaccaa Alignment from Spaln_aa2Genome GACAGAGACCTAGGAGACGAGTATGGCTGGAAGCAGGTGCATGGAGATGTGTTCAGACCGTCAAGTCACCCTCTGATCTTCTCCTCCCTCATTGGCTCTGGATGTCAGATATTTGCTGTGTCTCTCATTGTTATTATTGTTGCCATGATAGAGGACTTATATACAGA tatcaggggccttgtgagtattaaccttagtttgtcgttttttcttgtagGACAGAGACCTTGGAGATAAGTATGGCTGGAAACAAGTACATGGAGATGTATTCAGACCATCAAGTCATCCTCTGATTTTCTCATCATTAATTGGTTCAGGATGTCAGATATTTGCTGTATCCCTCATCGTTATTATTGTAGCCATGATAGAGGACTTGTATACTGAgtaaccaggtgacctgtgataatcaccagctaaatggtctcattgaccaa Alignment from Spaln_nt2Genome GACAGAGACCTAGGAGACGAGTATGGCTGGAAGCAGGTGCATGGAGATGTGTTCAGACCGTCAAGTCACCCTCTGATCTTCTCCTCCCTCATTGGCTCTGGATGTCAGATATTTGCTGTGTCTCTCATTGTTATTATTGTTGCCATGATAGAGGACTTATATACAGA tatcaggggccttgtgagtattaaccttagtttgtcgttttttcttgtagGACAGAGACCTTGGAGATAAGTATGGCTGGAAACAAGTACATGGAGATGTATTCAGACCATCAAGTCATCCTCTGATTTTCTCATCATTAATTGGTTCAGGATGTCAGATATTTGCTGTATCCCTCATCGTTATTATTGTAGCCATGATAGAGGACTTGTATACTGAgtaaccaggtgacctgtgataatcaccagctaaatggtctcattgaccaa Alignment from Pairagon GACAGAGACCTAGGAGACGAGTATGGCTGGAAGCAGGTGCATGGAGATGTGTTCAGACCGTCAAGTCACCCTCTGATCTTCTCCTCCCTCATTGGCTCTGGATGTCAGATATTTGCTGTGTCTCTCATTGTTATTATTGTTGCCATGATAGAGGACTTATATACAGA tatcaggggccttgtgagtattaaccttagtttgtcgttttttcttgtagGACAGAGACCTTGGAGATAAGTATGGCTGGAAACAAGTACATGGAGATGTATTCAGACCATCAAGTCATCCTCTGATTTTCTCATCATTAATTGGTTCAGGATGTCAGATATTTGCTGTATCCCTCATCGTTATTATTGTAGCCATGATAGAGGACTTGTATACTGAgtaaccaggtgacctgtgataatcaccagctaaatggtctcattgaccaa Alignment from Exonerate_protein2genome GACAGAGACCTAGGAGACGAGTATGGCTGGAAGCAGGTGCATGGAGATGTGTTCAGACCGTCAAGTCACCCTCTGATCTTCTCCTCCCTCATTGGCTCTGGATGTCAGATATTTGCTGTGTCTCTCATTGTTATTATTGTTGCCATGATAGAGGACTTATATACAGA tatcaggggccttgtgagtattaaccttagtttgtcgttttttcttgtagGACAGAGACCTTGGAGATAAGTATGGCTGGAAACAAGTACATGGAGATGTATTCAGACCATCAAGTCATCCTCTGATTTTCTCATCATTAATTGGTTCAGGATGTCAGATATTTGCTGTATCCCTCATCGTTATTATTGTAGCCATGATAGAGGACTTGTATACTGAgtaaccaggtgacctgtgataatcaccagctaaatggtctcattgaccaa Alignment from Exonerate_coding2genome GACAGAGACCTAGGAGACGAGTATGGCTGGAAGCAGGTGCATGGAGATGTGTTCAGACCGTCAAGTCACCCTCTGATCTTCTCCTCCCTCATTGGCTCTGGATGTCAGATATTTGCTGTGTCTCTCATTGTTATTATTGTTGCCATGATAGAGGACTTATATACAGA tatcaggggccttgtgagtattaaccttagtttgtcgttttttcttgtagGACAGAGACCTTGGAGATAAGTATGGCTGGAAACAAGTACATGGAGATGTATTCAGACCATCAAGTCATCCTCTGATTTTCTCATCATTAATTGGTTCAGGATGTCAGATATTTGCTGTATCCCTCATCGTTATTATTGTAGCCATGATAGAGGACTTGTATACTGAgtaaccaggtgacctgtgataatcaccagctaaatggtctcattgaccaa Alignment from GeneWise GACAGAGACCTAGGAGACGAGTATGGCTGGAAGCAGGTGCATGGAGATGTGTTCAGACCGTCAAGTCACCCTCTGATCTTCTCCTCCCTCATTGGCTCTGGATGTCAGATATTTGCTGTGTCTCTCATTGTTATTATTGTTGCCATGATAGAGGACTTATATACAGA tatcaggggccttgtgagtattaaccttagtttgtcgttttttcttgtagGACAGAGACCTTGGAGATAAGTATGGCTGGAAACAAGTACATGGAGATGTATTCAGACCATCAAGTCATCCTCTGATTTTCTCATCATTAATTGGTTCAGGATGTCAGATATTTGCTGTATCCCTCATCGTTATTATTGTAGCCATGATAGAGGACTTGTATACTGAgtaaccaggtgacctgtgataatcaccagctaaatggtctcattgaccaa #### Tm9sf3_ID8146_4 --> 2 - 0 Original Alignment gtATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTACTATCTTTGGACCTACAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATTGTTGATGTTAATCTAACTAGTGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATATTCG gcataattccaggtagacatacactgaagataatttcaatcttcttgtaggcATTGTAGGTGAAGCGGATGAAAATGGGGAAGATTATTACCTTTGGACCTATAAAAAGCTTGAAGTAGGCTTCAACGGTAACAGAATGGTTGATGTTAATTTGATAAGTGAAGGAAAGGTTAAGTTGGTTCCAAAAACTAAAATACAGATGTCATACTCTgtaagttattatgtcaaacagtagtccacttagtattagcaaacatttgt Alignment from CESAR gtATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTACTATCTTTGGACCTACAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATTGTTGATGTTAATCTAACTAGTGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATATTCG gcataattccaggtagacatacactgaagataatttcaatcttcttgtaggcATTGTAGGTGAAGCGGATGAAAATGGGGAAGATTATTACCTTTGGACCTATAAAAAGCTTGAAGTAGGCTTCAACGGTAACAGAATGGTTGATGTTAATTTGATAAGTGAAGGAAAGGTTAAGTTGGTTCCAAAAACTAAAATACAGATGTCATACTCTgtaagttattatgtcaaacagtagtccacttagtattagcaaacatttgt Alignment from Spaln_aa2Genome GTATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTACTATCTTTGGACCTACAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATTGTTGATGTTAATCTAACTAGTGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATATTCG gcataattccaggtagacatacactgaagataatttcaatcttcttgtagGCATTGTAGGTGAAGCGGATGAAAATGGGGAAGATTATTACCTTTGGACCTATAAAAAGCTTGAAGTAGGCTTCAACGGTAACAGAATGGTTGATGTTAATTTGATAAGTGAAGGAAAGGTTAAGTTGGTTCCAAAAACTAAAATACAGATGTCATACTCTgtaagttattatgtcaaacagtagtccacttagtattagcaaacatttgt Alignment from Spaln_nt2Genome GTATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTACTATCTTTGGACCTACAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATTGTTGATGTTAATCTAACTAGTGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATATTCG gcataattccaggtagacatacactgaagataatttcaatcttcttgtagGCATTGTAGGTGAAGCGGATGAAAATGGGGAAGATTATTACCTTTGGACCTATAAAAAGCTTGAAGTAGGCTTCAACGGTAACAGAATGGTTGATGTTAATTTGATAAGTGAAGGAAAGGTTAAGTTGGTTCCAAAAACTAAAATACAGATGTCATACTCTgtaagttattatgtcaaacagtagtccacttagtattagcaaacatttgt Alignment from Pairagon GTATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTACTATCTTTGGACCTACAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATTGTTGATGTTAATCTAACTAGTGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATATTCG gcataattccaggtagacatacactgaagataatttcaatcttcttgtagGCATTGTAGGTGAAGCGGATGAAAATGGGGAAGATTATTACCTTTGGACCTATAAAAAGCTTGAAGTAGGCTTCAACGGTAACAGAATGGTTGATGTTAATTTGATAAGTGAAGGAAAGGTTAAGTTGGTTCCAAAAACTAAAATACAGATGTCATACTCTgtaagttattatgtcaaacagtagtccacttagtattagcaaacatttgt Alignment from Exonerate_protein2genome GTATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTACTATCTTTGGACCTACAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATTGTTGATGTTAATCTAACTAGTGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATATTCG gcataattccaggtagacatacactgaagataatttcaatcttcttgtagGCATTGTAGGTGAAGCGGATGAAAATGGGGAAGATTATTACCTTTGGACCTATAAAAAGCTTGAAGTAGGCTTCAACGGTAACAGAATGGTTGATGTTAATTTGATAAGTGAAGGAAAGGTTAAGTTGGTTCCAAAAACTAAAATACAGATGTCATACTCTgtaagttattatgtcaaacagtagtccacttagtattagcaaacatttgt Alignment from Exonerate_coding2genome GTATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTACTATCTTTGGACCTACAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATTGTTGATGTTAATCTAACTAGTGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATATTCG gcataattccaggtagacatacactgaagataatttcaatcttcttgtagGCATTGTAGGTGAAGCGGATGAAAATGGGGAAGATTATTACCTTTGGACCTATAAAAAGCTTGAAGTAGGCTTCAACGGTAACAGAATGGTTGATGTTAATTTGATAAGTGAAGGAAAGGTTAAGTTGGTTCCAAAAACTAAAATACAGATGTCATACTCTgtaagttattatgtcaaacagtagtccacttagtattagcaaacatttgt Alignment from GeneWise GTATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTACTATCTTTGGACCTACAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATTGTTGATGTTAATCTAACTAGTGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATATTCG gcataattccaggtagacatacactgaagataatttcaatcttcttgtagGCATTGTAGGTGAAGCGGATGAAAATGGGGAAGATTATTACCTTTGGACCTATAAAAAGCTTGAAGTAGGCTTCAACGGTAACAGAATGGTTGATGTTAATTTGATAAGTGAAGGAAAGGTTAAGTTGGTTCCAAAAACTAAAATACAGATGTCATACTCTgtaagttattatgtcaaacagtagtccacttagtattagcaaacatttgt #### Tm9sf3_ID8147_3 --> 2 - 1 Original Alignment atGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCGTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGg ctataatgcactggagacatgtaggtcactttgcgtgttttctcttgtagatGATGTGATGCCAGGCACATATTGTGAGATTGACTTAGATAAAGAGAAAAGGGATACTTTTGTGTATGCTATTAAGAATCACTATTGGTATCAGATGTATATGGATGACTTACCAATATGGggtgggctgactactccgttgacaattccatattatgattggaagatgctt Alignment from CESAR atGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCGTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGg ctataatgcactggagacatgtaggtcactttgcgtgttttctcttgtagatGATGTGATGCCAGGCACATATTGTGAGATTGACTTAGATAAAGAGAAAAGGGATACTTTTGTGTATGCTATTAAGAATCACTATTGGTATCAGATGTATATGGATGACTTACCAATATGGggtgggctgactactccgttgacaattccatattatgattggaagatgctt Alignment from Spaln_aa2Genome ATGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCGTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGG ctataatgcactggagacatgtaggtcactttgcgtgttttctcttgtagATGATGTGATGCCAGGCACATATTGTGAGATTGACTTAGATAAAGAGAAAAGGGATACTTTTGTGTATGCTATTAAGAATCACTATTGGTATCAGATGTATATGGATGACTTACCAATATGGGgtgggctgactactccgttgacaattccatattatgattggaagatgctt Alignment from Spaln_nt2Genome ATGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCGTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGG ctataatgcactggagacatgtaggtcactttgcgtgttttctcttgtagATGATGTGATGCCAGGCACATATTGTGAGATTGACTTAGATAAAGAGAAAAGGGATACTTTTGTGTATGCTATTAAGAATCACTATTGGTATCAGATGTATATGGATGACTTACCAATATGGGgtgggctgactactccgttgacaattccatattatgattggaagatgctt Alignment from Pairagon ATGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCGTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGG ctataatgcactggagacatgtaggtcactttgcgtgttttctcttgtagATGATGTGATGCCAGGCACATATTGTGAGATTGACTTAGATAAAGAGAAAAGGGATACTTTTGTGTATGCTATTAAGAATCACTATTGGTATCAGATGTATATGGATGACTTACCAATATGGGgtgggctgactactccgttgacaattccatattatgattggaagatgctt Alignment from Exonerate_protein2genome ATGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCGTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGG ctataatgcactggagacatgtaggtcactttgcgtgttttctcttgtagATGATGTGATGCCAGGCACATATTGTGAGATTGACTTAGATAAAGAGAAAAGGGATACTTTTGTGTATGCTATTAAGAATCACTATTGGTATCAGATGTATATGGATGACTTACCAATATGGGgtgggctgactactccgttgacaattccatattatgattggaagatgctt Alignment from Exonerate_coding2genome ATGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCGTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGG ctataatgcactggagacatgtaggtcactttgcgtgttttctcttgtagATGATGTGATGCCAGGCACATATTGTGAGATTGACTTAGATAAAGAGAAAAGGGATACTTTTGTGTATGCTATTAAGAATCACTATTGGTATCAGATGTATATGGATGACTTACCAATATGGGgtgggctgactactccgttgacaattccatattatgattggaagatgctt Alignment from GeneWise ATGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCGTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGG ctataatgcactggagacatgtaggtcactttgcgtgttttctcttgtagATGATGTGATGCCAGGCACATATTGTGAGATTGACTTAGATAAAGAGAAAAGGGATACTTTTGTGTATGCTATTAAGAATCACTATTGGTATCAGATGTATATGGATGACTTACCAATATGGGgtgggctgactactccgttgacaattccatattatgattggaagatgctt #### Tm9sf3_ID8148_2 --> 0 - 1 Original Alignment TATCAAGATAAAGAAGAAGTTGTTTTATGGATGAATACTGTTGGGCCCTACCACAATCGCCAAGAAACATATAAATACTTTTCACTTCCATTCTGTGTGGGGTCAAAAAAAAGTATCAGTCATTACCATGAAACTTTGGGAGAAGCACTTCAAGGAGTTGAATTAGAATTTAGTGGCCTGGACATTAAATTTAAAg tagaccgataaatttgaaattacttgtatgtttttctctatgccctgtagTATCAAGATAAAGAAAAGGTTGTTCTATGGATGAATGCAGTTGGGCCCTATCACAATCGCCAAGAGACACATAAATACTTTTCACTTTTATTCTGTGTGGGCTCAAAGAAAAGTATCAGTCATTACCATGAAACTTTGGGAGATGCACTTCAACGAGTAGAA---GATTTTAGTGGCCTAGACATAAAATTTAAAggtgagctaactttagtcatgcccacatgtcttggagtctgtgttggcatg Alignment from CESAR TATCAAGATAAAGAAGAAGTTGTTTTATGGATGAATACTGTTGGGCCCTACCACAATCGCCAAGAAACATATAAATACTTTTCACTTCCATTCTGTGTGGGGTCAAAAAAAAGTATCAGTCATTACCATGAAACTTTGGGAGAAGCACTTCAAGGAGTTGAATTAGAATTTAGTGGCCTGGACATTAAATTTAAAg tagaccgataaatttgaaattacttgtatgtttttctctatgccctgtagTATCAAGATAAAGAAAAGGTTGTTCTATGGATGAATGCAGTTGGGCCCTATCACAATCGCCAAGAGACACATAAATACTTTTCACTTTTATTCTGTGTGGGCTCAAAGAAAAGTATCAGTCATTACCATGAAACTTTGGGAGATGCACTTCAACGAGTAGAA---GATTTTAGTGGCCTAGACATAAAATTTAAAggtgagctaactttagtcatgcccacatgtcttggagtctgtgttggcatg Alignment from Spaln_aa2Genome TATCAAGATAAAGAAGAAGTTGTTTTATGGATGAATACTGTTGGGCCCTACCACAATCGCCAAGAAACATATAAATACTTTTCACTTCCATTCTGTGTGGGGTCAAAAAAAAGTATCAGTCATTACCATGAAACTTTGGGAGAAGCACTTCAAGGAGTTGAATTAGAATTTAGTGGCCTGGACATTAAATTTAAAG tagaccgataaatttgaaattacttgtatgtttttctctatgccctgtagTATCAAGATAAAGAAAAGGTTGTTCTATGGATGAATGCAGTTGGGCCCTATCACAATCGCCAAGAGACACATAAATACTTTTCACTTTTATTCTGTGTGGGCTCAAAGAAAAGTATCAGTCATTACCATGAAACTTTGGGAGATGCACTTCAACGAGTAGAA---GATTTTAGTGGCCTAGACATAAAATTTAAAGgtgagctaactttagtcatgcccacatgtcttggagtctgtgttggcatg Alignment from Spaln_nt2Genome TATCAAGATAAAGAAGAAGTTGTTTTATGGATGAATACTGTTGGGCCCTACCACAATCGCCAAGAAACATATAAATACTTTTCACTTCCATTCTGTGTGGGGTCAAAAAAAAGTATCAGTCATTACCATGAAACTTTGGGAGAAGCACTTCAAGGAGTTGAATTAGAATTTAGTGGCCTGGACATTAAATTTAAAG tagaccgataaatttgaaattacttgtatgtttttctctatgccctgtagTATCAAGATAAAGAAAAGGTTGTTCTATGGATGAATGCAGTTGGGCCCTATCACAATCGCCAAGAGACACATAAATACTTTTCACTTTTATTCTGTGTGGGCTCAAAGAAAAGTATCAGTCATTACCATGAAACTTTGGGAGATGCACTTCAACGAGTAGAA---GATTTTAGTGGCCTAGACATAAAATTTAAAGgtgagctaactttagtcatgcccacatgtcttggagtctgtgttggcatg Alignment from Pairagon TATCAAGATAAAGAAGAAGTTGTTTTATGGATGAATACTGTTGGGCCCTACCACAATCGCCAAGAAACATATAAATACTTTTCACTTCCATTCTGTGTGGGGTCAAAAAAAAGTATCAGTCATTACCATGAAACTTTGGGAGAAGCACTTCAAGGAGTTGAATTAGAATTTAGTGGCCTGGACATTAAATTTAAAG tagaccgataaatttgaaattacttgtatgtttttctctatgccctgtagTATCAAGATAAAGAAAAGGTTGTTCTATGGATGAATGCAGTTGGGCCCTATCACAATCGCCAAGAGACACATAAATACTTTTCACTTTTATTCTGTGTGGGCTCAAAGAAAAGTATCAGTCATTACCATGAAACTTTGGGAGATGCACTTCAACGAGTAGA---AGATTTTAGTGGCCTAGACATAAAATTTAAAGgtgagctaactttagtcatgcccacatgtcttggagtctgtgttggcatg Alignment from Exonerate_protein2genome TATCAAGATAAAGAAGAAGTTGTTTTATGGATGAATACTGTTGGGCCCTACCACAATCGCCAAGAAACATATAAATACTTTTCACTTCCATTCTGTGTGGGGTCAAAAAAAAGTATCAGTCATTACCATGAAACTTTGGGAGAAGCACTTCAAGGAGTTGAATTAGAATTTAGTGGCCTGGACATTAAATTTAAAG tagaccgataaatttgaaattacttgtatgtttttctctatgccctgtagTATCAAGATAAAGAAAAGGTTGTTCTATGGATGAATGCAGTTGGGCCCTATCACAATCGCCAAGAGACACATAAATACTTTTCACTTTTATTCTGTGTGGGCTCAAAGAAAAGTATCAGTCATTACCATGAAACTTTGGGAGATGCACTTCAACGAGTAGAA---GATTTTAGTGGCCTAGACATAAAATTTAAAGgtgagctaactttagtcatgcccacatgtcttggagtctgtgttggcatg Alignment from Exonerate_coding2genome TATCAAGATAAAGAAGAAGTTGTTTTATGGATGAATACTGTTGGGCCCTACCACAATCGCCAAGAAACATATAAATACTTTTCACTTCCATTCTGTGTGGGGTCAAAAAAAAGTATCAGTCATTACCATGAAACTTTGGGAGAAGCACTTCAAGGAGTTGAATTAGAATTTAGTGGCCTGGACATTAAATTTAAAG tagaccgataaatttgaaattacttgtatgtttttctctatgccctgtagTATCAAGATAAAGAAAAGGTTGTTCTATGGATGAATGCAGTTGGGCCCTATCACAATCGCCAAGAGACACATAAATACTTTTCACTTTTATTCTGTGTGGGCTCAAAGAAAAGTATCAGTCATTACCATGAAACTTTGGGAGATGCACTTCAACGAGTAGAA---GATTTTAGTGGCCTAGACATAAAATTTAAAGgtgagctaactttagtcatgcccacatgtcttggagtctgtgttggcatg Alignment from GeneWise TATCAAGATAAAGAAGAAGTTGTTTTATGGATGAATACTGTTGGGCCCTACCACAATCGCCAAGAAACATATAAATACTTTTCACTTCCATTCTGTGTGGGGTCAAAAAAAAGTATCAGTCATTACCATGAAACTTTGGGAGAAGCACTTCAAGGAGTTGAATTAGAATTTAGTGGCCTGGACATTAAATTTAAAG tagaccgataaatttgaaattacttgtatgtttttctctatgccctgtagTATCAAGATAAAGAAAAGGTTGTTCTATGGATGAATGCAGTTGGGCCCTATCACAATCGCCAAGAGACACATAAATACTTTTCACTTTTATTCTGTGTGGGCTCAAAGAAAAGTATCAGTCATTACCATGAAACTTTGGGAGATGCACTTCAACGAGTAGAA---GATTTTAGTGGCCTAGACATAAAATTTAAAGgtgagctaactttagtcatgcccacatgtcttggagtctgtgttggcatg #### Tmc1_ID4825_17 --> 1 - 2 Original Alignment tGGTAAAAACAGGATGTTTGAAGTCATCGGTGAGACCCTGGAACATGACTTCCCAAGCTGGATGGCGAAGATCCTGAGGCAGCTTTCTAACCCCGGCCTTGTCATTGCTGTCATTCTGGTGATGgt tggggtcatggtatgaccaccattttttgttctgatcttgctcccctcagtGGTAAGAATAGGATTTTTGAAGTAATCGGTGAGACCTTAGAACATGATTTCCCAAGTTGGATGGCAAAGATCCTCCGGCAGTTCTCAAACCCTGGTCTAGTGATTGCTGTCATTTTGGTGATGgtgtaatggtcatgcctgggttgctccctgtccgattatagtggcatctaat Alignment from CESAR tGGTAAAAACAGGATGTTTGAAGTCATCGGTGAGACCCTGGAACATGACTTCCCAAGCTGGATGGCGAAGATCCTGAGGCAGCTTTCTAACCCCGGCCTTGTCATTGCTGTCATTCTGGTGATGgt tggggtcatggtatgaccaccattttttgttctgatcttgctcccctcagtGGTAAGAATAGGATTTTTGAAGTAATCGGTGAGACCTTAGAACATGATTTCCCAAGTTGGATGGCAAAGATCCTCCGGCAGTTCTCAAACCCTGGTCTAGTGATTGCTGTCATTTTGGTGATGgtgtaatggtcatgcctgggttgctccctgtccgattatagtggcatctaat Alignment from Spaln_aa2Genome TGGTAAAAACAGGATGTTTGAAGTCATCGGTGAGACCCTGGAACATGACTTCCCAAGCTGGATGGCGAAGATCCTGAGGCAGCTTTCTAACCCCGGCCTTGTCATTGCTGTCATTCTGGTGATGGT tggggtcatggtatgaccaccattttttgttctgatcttgctcccctcagTGGTAAGAATAGGATTTTTGAAGTAATCGGTGAGACCTTAGAACATGATTTCCCAAGTTGGATGGCAAAGATCCTCCGGCAGTTCTCAAACCCTGGTCTAGTGATTGCTGTCATTTTGGTGATGGTgtaatggtcatgcctgggttgctccctgtccgattatagtggcatctaat Alignment from Spaln_nt2Genome TGGTAAAAACAGGATGTTTGAAGTCATCGGTGAGACCCTGGAACATGACTTCCCAAGCTGGATGGCGAAGATCCTGAGGCAGCTTTCTAACCCCGGCCTTGTCATTGCTGTCATTCTGGTGATGGT tggggtcatggtatgaccaccattttttgttctgatcttgctcccctcagTGGTAAGAATAGGATTTTTGAAGTAATCGGTGAGACCTTAGAACATGATTTCCCAAGTTGGATGGCAAAGATCCTCCGGCAGTTCTCAAACCCTGGTCTAGTGATTGCTGTCATTTTGGTGATGGTgtaatggtcatgcctgggttgctccctgtccgattatagtggcatctaat Alignment from Pairagon TGGTAAAAACAGGATGTTTGAAGTCATCGGTGAGACCCTGGAACATGACTTCCCAAGCTGGATGGCGAAGATCCTGAGGCAGCTTTCTAACCCCGGCCTTGTCATTGCTGTCATTCTGGTGATGGT tggggtcatggtatgaccaccattttttgttctgatcttgctcccctcagTGGTAAGAATAGGATTTTTGAAGTAATCGGTGAGACCTTAGAACATGATTTCCCAAGTTGGATGGCAAAGATCCTCCGGCAGTTCTCAAACCCTGGTCTAGTGATTGCTGTCATTTTGGTGATGGTgtaatggtcatgcctgggttgctccctgtccgattatagtggcatctaat Alignment from Exonerate_protein2genome TGGTAAAAACAGGATGTTTGAAGTCATCGGTGAGACCCTGGAACATGACTTCCCAAGCTGGATGGCGAAGATCCTGAGGCAGCTTTCTAACCCCGGCCTTGTCATTGCTGTCATTCTGGTGATGGT tggggtcatggtatgaccaccattttttgttctgatcttgctcccctcagTGGTAAGAATAGGATTTTTGAAGTAATCGGTGAGACCTTAGAACATGATTTCCCAAGTTGGATGGCAAAGATCCTCCGGCAGTTCTCAAACCCTGGTCTAGTGATTGCTGTCATTTTGGTGATGGTgtaatggtcatgcctgggttgctccctgtccgattatagtggcatctaat Alignment from Exonerate_coding2genome TGGTAAAAACAGGATGTTTGAAGTCATCGGTGAGACCCTGGAACATGACTTCCCAAGCTGGATGGCGAAGATCCTGAGGCAGCTTTCTAACCCCGGCCTTGTCATTGCTGTCATTCTGGTGATGGT tggggtcatggtatgaccaccattttttgttctgatcttgctcccctcagTGGTAAGAATAGGATTTTTGAAGTAATCGGTGAGACCTTAGAACATGATTTCCCAAGTTGGATGGCAAAGATCCTCCGGCAGTTCTCAAACCCTGGTCTAGTGATTGCTGTCATTTTGGTGATGGTgtaatggtcatgcctgggttgctccctgtccgattatagtggcatctaat Alignment from GeneWise TGGTAAAAACAGGATGTTTGAAGTCATCGGTGAGACCCTGGAACATGACTTCCCAAGCTGGATGGCGAAGATCCTGAGGCAGCTTTCTAACCCCGGCCTTGTCATTGCTGTCATTCTGGTGATGGT tggggtcatggtatgaccaccattttttgttctgatcttgctcccctcagTGGTAAGAATAGGATTTTTGAAGTAATCGGTGAGACCTTAGAACATGATTTCCCAAGTTGGATGGCAAAGATCCTCCGGCAGTTCTCAAACCCTGGTCTAGTGATTGCTGTCATTTTGGTGATGGTgtaatggtcatgcctgggttgctccctgtccgattatagtggcatctaat #### Tmem180_ID9860_2 --> 0 - 2 Original Alignment ACTGTATTTCTCCTCTGGAACAGCTTCAATGACCCCCTCTTCGGCTGGCTCAGTGATCGTCAGCTCCTCAGCTCCCAGCCCcg ctacgtcacaagaggggtcttcacctgttgatttctttttgtatcaacagACAGTATTCCTACTCTGGAATAGCTTCAATGATCCCCTCTTCAGCTGGCTCAGTGATCGTCAGTTACTCAGTTCCCAACCCcagtaaaaaatctgagggggtgccagttacattgctaaacaactaaatcact Alignment from CESAR ACTGTATTTCTCCTCTGGAACAGCTTCAATGACCCCCTCTTCGGCTGGCTCAGTGATCGTCAGCTCCTCAGCTCCCAGCCCcg ctacgtcacaagaggggtcttcacctgttgatttctttttgtatcaacagACAGTATTCCTACTCTGGAATAGCTTCAATGATCCCCTCTTCAGCTGGCTCAGTGATCGTCAGTTACTCAGTTCCCAACCCcagtaaaaaatctgagggggtgccagttacattgctaaacaactaaatcact Alignment from Spaln_aa2Genome ACTGTATTTCTCCTCTGGAACAGCTTCAATGACCCCCTCTTCGGCTGGCTCAGTGATCGTCAGCTCCTCAGCTCCCAGCCCCG ctacgtcacaagaggggtcttcacctgttgatttctttttgtatcaacagACAGTATTCCTACTCTGGAATAGCTTCAATGATCCCCTCTTCAGCTGGCTCAGTGATCGTCAGTTACTCAGTTCCCAACCCCAgtaaaaaatctgagggggtgccagttacattgctaaacaactaaatcact Alignment from Spaln_nt2Genome ACTGTATTTCTCCTCTGGAACAGCTTCAATGACCCCCTCTTCGGCTGGCTCAGTGATCGTCAGCTCCTCAGCTCCCAGCCCCG ctacgtcacaagaggggtcttcacctgttgatttctttttgtatcaacagACAGTATTCCTACTCTGGAATAGCTTCAATGATCCCCTCTTCAGCTGGCTCAGTGATCGTCAGTTACTCAGTTCCCAACCCCAgtaaaaaatctgagggggtgccagttacattgctaaacaactaaatcact Alignment from Pairagon ACTGTATTTCTCCTCTGGAACAGCTTCAATGACCCCCTCTTCGGCTGGCTCAGTGATCGTCAGCTCCTCAGCTCCCAGCCCCG ctacgtcacaagaggggtcttcacctgttgatttctttttgtatcaacagACAGTATTCCTACTCTGGAATAGCTTCAATGATCCCCTCTTCAGCTGGCTCAGTGATCGTCAGTTACTCAGTTCCCAACCCCAgtaaaaaatctgagggggtgccagttacattgctaaacaactaaatcact Alignment from Exonerate_protein2genome ACTGTATTTCTCCTCTGGAACAGCTTCAATGACCCCCTCTTCGGCTGGCTCAGTGATCGTCAGCTCCTCAGCTCCCAGCCCCG ctacgtcacaagaggggtcttcacctgttgatttctttttgtatcaacagACAGTATTCCTACTCTGGAATAGCTTCAATGATCCCCTCTTCAGCTGGCTCAGTGATCGTCAGTTACTCAGTTCCCAACCCCAgtaaaaaatctgagggggtgccagttacattgctaaacaactaaatcact Alignment from Exonerate_coding2genome ACTGTATTTCTCCTCTGGAACAGCTTCAATGACCCCCTCTTCGGCTGGCTCAGTGATCGTCAGCTCCTCAGCTCCCAGCCCCG ctacgtcacaagaggggtcttcacctgttgatttctttttgtatcaacagACAGTATTCCTACTCTGGAATAGCTTCAATGATCCCCTCTTCAGCTGGCTCAGTGATCGTCAGTTACTCAGTTCCCAACCCCAgtaaaaaatctgagggggtgccagttacattgctaaacaactaaatcact Alignment from GeneWise ACTGTATTTCTCCTCTGGAACAGCTTCAATGACCCCCTCTTCGGCTGGCTCAGTGATCGTCAGCTCCTCAGCTCCCAGCCCCG ctacgtcacaagaggggtcttcacctgttgatttctttttgtatcaacagACAGTATTCCTACTCTGGAATAGCTTCAATGATCCCCTCTTCAGCTGGCTCAGTGATCGTCAGTTACTCAGTTCCCAACCCCAgtaaaaaatctgagggggtgccagttacattgctaaacaactaaatcact #### Tmem180_ID9864_6 --> 2 - 2 Original Alignment gcATCTCCTATGTCGCTCCTCATCTCAACAACCTGTACTTCCTG---------------CCCCTGTGCCGGCGCTGGGGTGTCTATGCAGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGAGCCTTAGCCTCCTCATGCTGTTGGCTGGCCCAGACCACCCTGGCCTGCTTTGCTTCTTCATTGCCag ctggttggggatgccatctgattcaagtgaattgctctcctctgtctcaggcATTTCCTATGTTCCCCCACATCTCAACAACCTTTATTTCCTGCCTCTATGCCAAAGGCCCCTGTGCAGACACTGGGGTACCTATGCAGTAGTACGAGGGCTCTTTTTGCTCAAGCTGAGCCTTAGTCTTCTAATGTTGCTGGCTGGGCCAGACCACCCTGGTCTGCTTTGCTCCTTTATTCCCaggtgagaccaacctacttcacacctcaatagctacttgcaattgcttttta Alignment from CESAR gcATCTCCTATGTCGCTCCTCATCTCAACAACCTGTACTTCCTG---------------CCCCTGTGCCGGCGCTGGGGTGTCTATGCAGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGAGCCTTAGCCTCCTCATGCTGTTGGCTGGCCCAGACCACCCTGGCCTGCTTTGCTTCTTCATTGCCag ctggttggggatgccatctgattcaagtgaattgctctcctctgtctcaggcATTTCCTATGTTCCCCCACATCTCAACAACCTTTATTTCCTGCCTCTATGCCAAAGGCCCCTGTGCAGACACTGGGGTACCTATGCAGTAGTACGAGGGCTCTTTTTGCTCAAGCTGAGCCTTAGTCTTCTAATGTTGCTGGCTGGGCCAGACCACCCTGGTCTGCTTTGCTCCTTTATTCCCaggtgagaccaacctacttcacacctcaatagctacttgcatctcccccacc Alignment from Spaln_aa2Genome GCATCTCCTATGTCGCTCCTCATCTCAACAACCTGTACTTCCTGCCCCTGTGCCGGCGC---------------TGGGGTGTCTATGCAGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGAGCCTTAGCCTCCTCATGCTGTTGGCTGGCCCAGACCACCCTGGCCTGCTTTGCTTCTTCATTGCCAG ctggttggggatgccatctgattcaagtgaattgctctcctctgtctcagGCATTTCCTATGTTCCCCCACATCTCAACAACCTTTATTTCCTGCCTCTATGCCAAAGGCCCCTGTGCAGACACTGGGGTACCTATGCAGTAGTACGAGGGCTCTTTTTGCTCAAGCTGAGCCTTAGTCTTCTAATGTTGCTGGCTGGGCCAGACCACCCTGGTCTGCTTTGCTCCTTTATTCCCAGgtgagaccaacctacttcacacctcaatagctacttgcaattgcttttta Alignment from Spaln_nt2Genome GCATCTCCTATGTCGCTCCTCATCTCAACAACCTGTACTTCCTGCC---------------CCTGTGCCGGCGCTGGGGTGTCTATGCAGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGAGCCTTAGCCTCCTCATGCTGTTGGCTGGCCCAGACCACCCTGGCCTGCTTTGCTTCTTCATTGCCAG ctggttggggatgccatctgattcaagtgaattgctctcctctgtctcagGCATTTCCTATGTTCCCCCACATCTCAACAACCTTTATTTCCTGCCTCTATGCCAAAGGCCCCTGTGCAGACACTGGGGTACCTATGCAGTAGTACGAGGGCTCTTTTTGCTCAAGCTGAGCCTTAGTCTTCTAATGTTGCTGGCTGGGCCAGACCACCCTGGTCTGCTTTGCTCCTTTATTCCCAGgtgagaccaacctacttcacacctcaatagctacttgcaattgcttttta Alignment from Pairagon GCATCTCCTATGTCGCTCCTCATCTCAACAACCTGTACTTCCT---------------GCCCCTGTGCCGGCGCTGGGGTGTCTATGCAGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGAGCCTTAGCCTCCTCATGCTGTTGGCTGGCCCAGACCACCCTGGCCTGCTTTGCTTCTTCATTGCCAG ctggttggggatgccatctgattcaagtgaattgctctcctctgtctcagGCATTTCCTATGTTCCCCCACATCTCAACAACCTTTATTTCCTGCCTCTATGCCAAAGGCCCCTGTGCAGACACTGGGGTACCTATGCAGTAGTACGAGGGCTCTTTTTGCTCAAGCTGAGCCTTAGTCTTCTAATGTTGCTGGCTGGGCCAGACCACCCTGGTCTGCTTTGCTCCTTTATTCCCAGgtgagaccaacctacttcacacctcaatagctacttgcaattgcttttta Alignment from Exonerate_protein2genome GCATCTCCTATGTCGCTCCTCATCTCAACAACCTGTACTTCCTGCCCCTGTGCCGGCGC---------------TGGGGTGTCTATGCAGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGAGCCTTAGCCTCCTCATGCTGTTGGCTGGCCCAGACCACCCTGGCCTGCTTTGCTTCTTCATTGCCAG ctggttggggatgccatctgattcaagtgaattgctctcctctgtctcagGCATTTCCTATGTTCCCCCACATCTCAACAACCTTTATTTCCTGCCTCTATGCCAAAGGCCCCTGTGCAGACACTGGGGTACCTATGCAGTAGTACGAGGGCTCTTTTTGCTCAAGCTGAGCCTTAGTCTTCTAATGTTGCTGGCTGGGCCAGACCACCCTGGTCTGCTTTGCTCCTTTATTCCCAGgtgagaccaacctacttcacacctcaatagctacttgcaattgcttttta Alignment from Exonerate_coding2genome GCATCTCCTATGTCGCTCCTCATCTCAACAACCTGTACTTCCTGCCCCTGTGCCGGCGC---------------TGGGGTGTCTATGCAGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGAGCCTTAGCCTCCTCATGCTGTTGGCTGGCCCAGACCACCCTGGCCTGCTTTGCTTCTTCATTGCCAG ctggttggggatgccatctgattcaagtgaattgctctcctctgtctcagGCATTTCCTATGTTCCCCCACATCTCAACAACCTTTATTTCCTGCCTCTATGCCAAAGGCCCCTGTGCAGACACTGGGGTACCTATGCAGTAGTACGAGGGCTCTTTTTGCTCAAGCTGAGCCTTAGTCTTCTAATGTTGCTGGCTGGGCCAGACCACCCTGGTCTGCTTTGCTCCTTTATTCCCAGgtgagaccaacctacttcacacctcaatagctacttgcaattgcttttta Alignment from GeneWise GCATCTCCTATGTCGCTCCTCATCTCAACAACCTGTACTTCCTGCCCCTGTGCCGGCGC---------------TGGGGTGTCTATGCAGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGAGCCTTAGCCTCCTCATGCTGTTGGCTGGCCCAGACCACCCTGGCCTGCTTTGCTTCTTCATTGCCAG ctggttggggatgccatctgattcaagtgaattgctctcctctgtctcagGCATTTCCTATGTTCCCCCACATCTCAACAACCTTTATTTCCTGCCTCTATGCCAAAGGCCCCTGTGCAGACACTGGGGTACCTATGCAGTAGTACGAGGGCTCTTTTTGCTCAAGCTGAGCCTTAGTCTTCTAATGTTGCTGGCTGGGCCAGACCACCCTGGTCTGCTTTGCTCCTTTATTCCCAGgtgagaccaacctacttcacacctcaatagctacttgcaattgcttttta #### Tmem258_ID2706_2 --> 0 - 2 Original Alignment GAGCTCGAAGCCATGAGTAGGTACACCAGCCCAGTGAACCCGGCTGTCTTCCCTCACCTGACTGTGGTACTTCTGGCCATCGGCATGTTCTTCACTGCCTGGTTCTTCgt tgcatgtagttgtcattctttctaatcattttttatgttaataaaaccagGAACTGGAAGCAATGAGTAGGTATACCAGTCCAGTGAACCTGGCTGTCTTCCCTCATCTGACTGTGTTACTGCTTGCCATTGGCATGTTCTTCACTGCCTGGTTCTTTgtgttaagtttgtaaggtaatgtaagtcttatttttggactcattctgtcag Alignment from CESAR GAGCTCGAAGCCATGAGTAGGTACACCAGCCCAGTGAACCCGGCTGTCTTCCCTCACCTGACTGTGGTACTTCTGGCCATCGGCATGTTCTTCACTGCCTGGTTCTTCgt tgcatgtagttgtcattctttctaatcattttttatgttaataaaaccagGAACTGGAAGCAATGAGTAGGTATACCAGTCCAGTGAACCTGGCTGTCTTCCCTCATCTGACTGTGTTACTGCTTGCCATTGGCATGTTCTTCACTGCCTGGTTCTTTgtgttaagtttgtaaggtaatgtaagtcttatttttggactcattctgtcag Alignment from Spaln_aa2Genome GAGCTCGAAGCCATGAGTAGGTACACCAGCCCAGTGAACCCGGCTGTCTTCCCTCACCTGACTGTGGTACTTCTGGCCATCGGCATGTTCTTCACTGCCTGGTTCTTCGT tgcatgtagttgtcattctttctaatcattttttatgttaataaaaccagGAACTGGAAGCAATGAGTAGGTATACCAGTCCAGTGAACCTGGCTGTCTTCCCTCATCTGACTGTGTTACTGCTTGCCATTGGCATGTTCTTCACTGCCTGGTTCTTTGTgttaagtttgtaaggtaatgtaagtcttatttttggactcattctgtcag Alignment from Spaln_nt2Genome GAGCTCGAAGCCATGAGTAGGTACACCAGCCCAGTGAACCCGGCTGTCTTCCCTCACCTGACTGTGGTACTTCTGGCCATCGGCATGTTCTTCACTGCCTGGTTCTTCGT tgcatgtagttgtcattctttctaatcattttttatgttaataaaaccagGAACTGGAAGCAATGAGTAGGTATACCAGTCCAGTGAACCTGGCTGTCTTCCCTCATCTGACTGTGTTACTGCTTGCCATTGGCATGTTCTTCACTGCCTGGTTCTTTGTgttaagtttgtaaggtaatgtaagtcttatttttggactcattctgtcag Alignment from Pairagon ATGGAGCTCGAAGCCATGAGTAGGTACACCAGCCCAGTGAACCCGGCTGTCTTCCCTCACCTGACTGTGGTACTTCTGGCCATCGGCATGTTCTTCACTGCCTGGTTCTTCGT tgcatgtagttgtcattctttctaatcattttttatgttaataaaacCAGGAACTGGAAGCAATGAGTAGGTATACCAGTCCAGTGAACCTGGCTGTCTTCCCTCATCTGACTGTGTTACTGCTTGCCATTGGCATGTTCTTCACTGCCTGGTTCTTTGTgttaagtttgtaaggtaatgtaagtcttatttttggactcattctgtcag Alignment from Exonerate_protein2genome ATGGAGCTCGAAGCCATGAGTAGGTACACCAGCCCAGTGAACCCGGCTGTCTTCCCTCACCTGACTGTGGTACTTCTGGCCATCGGCATGTTCTTCACTGCCTGGTTCTTCGT tgcatgtagttgtcattctttctaatcattttttatgttaataaaacCAGGAACTGGAAGCAATGAGTAGGTATACCAGTCCAGTGAACCTGGCTGTCTTCCCTCATCTGACTGTGTTACTGCTTGCCATTGGCATGTTCTTCACTGCCTGGTTCTTTGTgttaagtttgtaaggtaatgtaagtcttatttttggactcattctgtcag Alignment from Exonerate_coding2genome ATGGAGCTCGAAGCCATGAGTAGGTACACCAGCCCAGTGAACCCGGCTGTCTTCCCTCACCTGACTGTGGTACTTCTGGCCATCGGCATGTTCTTCACTGCCTGGTTCTTCGT tgcatgtagttgtcattctttctaatcattttttatgttaataaaacCAGGAACTGGAAGCAATGAGTAGGTATACCAGTCCAGTGAACCTGGCTGTCTTCCCTCATCTGACTGTGTTACTGCTTGCCATTGGCATGTTCTTCACTGCCTGGTTCTTTGTgttaagtttgtaaggtaatgtaagtcttatttttggactcattctgtcag Alignment from GeneWise ATGGAGCTCGAAGCCATGAGTAGGTACACCAGCCCAGTGAACCCGGCTGTCTTCCCTCACCTGACTGTGGTACTTCTGGCCATCGGCATGTTCTTCACTGCCTGGTTCTTCGT tgcatgtagttgtcattctttctaatcattttttatgttaataaaacCAGGAACTGGAAGCAATGAGTAGGTATACCAGTCCAGTGAACCTGGCTGTCTTCCCTCATCTGACTGTGTTACTGCTTGCCATTGGCATGTTCTTCACTGCCTGGTTCTTTGTgttaagtttgtaaggtaatgtaagtcttatttttggactcattctgtcag #### Tmem2_ID4947_9 --> 1 - 0 Original Alignment gGCTGTTTCAACTTTCTGGATTGCCCACCCCAACAACCACCTGATCAATAACGCAGCTGCAGGCTCACAG aagagtgtggttgctgaaagactgagttcacattatttctttgtctgtaggGCAGTTTCAACTTTCTGGATAGCTCACCCCAATAACCACCTAATCAATAATACAGCTGCAGGTTCACAGgtactgccccttgtttcagtattgcatgcatgtatgtgctctggtttaag Alignment from CESAR gGCTGTTTCAACTTTCTGGATTGCCCACCCCAACAACCACCTGATCAATAACGCAGCTGCAGGCTCACAG aagagtgtggttgctgaaagactgagttcacattatttctttgtctgtaggGCAGTTTCAACTTTCTGGATAGCTCACCCCAATAACCACCTAATCAATAATACAGCTGCAGGTTCACAGgtactgccccttgtttcagtattgcatgcatgtatgtgctctggtttaag Alignment from Spaln_aa2Genome GGCTGTTTCAACTTTCTGGATTGCCCACCCCAACAACCACCTGATCAATAACGCAGCTGCAGGCTCACAG aagagtgtggttgctgaaagactgagttcacattatttctttgtctgtagGGCAGTTTCAACTTTCTGGATAGCTCACCCCAATAACCACCTAATCAATAATACAGCTGCAGGTTCACAGgtactgccccttgtttcagtattgcatgcatgtatgtgctctggtttaag Alignment from Spaln_nt2Genome GGCTGTTTCAACTTTCTGGATTGCCCACCCCAACAACCACCTGATCAATAACGCAGCTGCAGGCTCACAG aagagtgtggttgctgaaagactgagttcacattatttctttgtctgtagGGCAGTTTCAACTTTCTGGATAGCTCACCCCAATAACCACCTAATCAATAATACAGCTGCAGGTTCACAGgtactgccccttgtttcagtattgcatgcatgtatgtgctctggtttaag Alignment from Pairagon GGCTGTTTCAACTTTCTGGATTGCCCACCCCAACAACCACCTGATCAATAACGCAGCTGCAGGCTCACAG aagagtgtggttgctgaaagactgagttcacattatttctttgtctgtagGGCAGTTTCAACTTTCTGGATAGCTCACCCCAATAACCACCTAATCAATAATACAGCTGCAGGTTCACAGgtactgccccttgtttcagtattgcatgcatgtatgtgctctggtttaag Alignment from Exonerate_protein2genome GGCTGTTTCAACTTTCTGGATTGCCCACCCCAACAACCACCTGATCAATAACGCAGCTGCAGGCTCACAG aagagtgtggttgctgaaagactgagttcacattatttctttgtctgtagGGCAGTTTCAACTTTCTGGATAGCTCACCCCAATAACCACCTAATCAATAATACAGCTGCAGGTTCACAGgtactgccccttgtttcagtattgcatgcatgtatgtgctctggtttaag Alignment from Exonerate_coding2genome GGCTGTTTCAACTTTCTGGATTGCCCACCCCAACAACCACCTGATCAATAACGCAGCTGCAGGCTCACAG aagagtgtggttgctgaaagactgagttcacattatttctttgtctgtagGGCAGTTTCAACTTTCTGGATAGCTCACCCCAATAACCACCTAATCAATAATACAGCTGCAGGTTCACAGgtactgccccttgtttcagtattgcatgcatgtatgtgctctggtttaag Alignment from GeneWise GGCTGTTTCAACTTTCTGGATTGCCCACCCCAACAACCACCTGATCAATAACGCAGCTGCAGGCTCACAG aagagtgtggttgctgaaagactgagttcacattatttctttgtctgtagGGCAGTTTCAACTTTCTGGATAGCTCACCCCAATAACCACCTAATCAATAATACAGCTGCAGGTTCACAGgtactgccccttgtttcagtattgcatgcatgtatgtgctctggtttaag #### Tmem2_ID4951_12 --> 1 - 2 Original Alignment gTTTCGGCCCCATCAGGATGCAGACCCTGAGAAG------------CCACGCGTTGCAGCCATCATCGACAGGCTCATTGCTTTTAAGAACAATGACAACGGAGCCTGGGTCAGAGGAGGAGATATTATTGTTCAGAATTCAgc gttcccaactggatttcaggcttgtggtcttattatcttattttgtctaggTTTAGGCCCCACCAGGATGCCGATGCTGAAAATGATCCTGAAAAACCACGCGTTGCAGCCATCACTGATCGACTT---ACTTTTAAGAATAATGACAATGGAGCCTGGGTCAGAGGTGGAGACATTATTCTCCAAAATTCAgcgtaattgatgtcttcagcatagagaatttagtgagaatttagattggtct Alignment from CESAR gTTTCGGCCCCATCAGGATGCAGAC------------CCTGAGAAGCCACGCGTTGCAGCCATCATCGACAGGCTCATTGCTTTTAAGAACAATGACAACGGAGCCTGGGTCAGAGGAGGAGATATTATTGTTCAGAATTCAgc gttcccaactggatttcaggcttgtggtcttattatcttattttgtctaggTTTAGGCCCCACCAGGATGCCGATGCTGAAAATGATCCTGAAAAACCACGCGTTGCAGCCATCACTGATCGACTT---ACTTTTAAGAATAATGACAATGGAGCCTGGGTCAGAGGTGGAGACATTATTCTCCAAAATTCAgcgtaattgatgtcttcagcatagagaatttagtgagaatttagattggtct Alignment from Spaln_aa2Genome GTTTCGGCCCCATCAGGATGCA------------GACCCTGAGAAGCCACGCGTTGCAGCCATCATCGACAGGCTCATTGCTTTTAAGAACAATGACAACGGAGCCTGGGTCAGAGGAGGAGATATTATTGTTCAGAATTCAGC gttcccaactggatttcaggcttgtggtcttattatcttattttgtctagGTTTAGGCCCCACCAGGATGCCGATGCTGAAAATGATCCTGAAAAACCACGCGTTGCAGCCATCACTGATCGACTT---ACTTTTAAGAATAATGACAATGGAGCCTGGGTCAGAGGTGGAGACATTATTCTCCAAAATTCAGCgtaattgatgtcttcagcatagagaatttagtgagaatttagattggtct Alignment from Spaln_nt2Genome GTTTCGGCCCCATCAGGATGCAGAC------------CCTGAGAAGCCACGCGTTGCAGCCATCATCGACAGGCTCATTGCTTTTAAGAACAATGACAACGGAGCCTGGGTCAGAGGAGGAGATATTATTGTTCAGAATTCAGC gttcccaactggatttcaggcttgtggtcttattatcttattttgtctagGTTTAGGCCCCACCAGGATGCCGATGCTGAAAATGATCCTGAAAAACCACGCGTTGCAGCCATCACTGATCGAC---TTACTTTTAAGAATAATGACAATGGAGCCTGGGTCAGAGGTGGAGACATTATTCTCCAAAATTCAGCgtaattgatgtcttcagcatagagaatttagtgagaatttagattggtct Alignment from Pairagon GTTTCGGCCCCATCAGGATGCA------------GACCCTGAGAAGCCACGCGTTGCAGCCATC----ATCGACAGGCTCATTGCTTTTAAGAACAATGACAACGGAGCCTGGGTCAGAGGAGGAGATATTATTGTTCAGAATTCAGC gttcccaactggatttcaggcttgtggtcttattatcttattttgtctagGTTTAGGCCCCACCAGGATGCCGATGCTGAAAATGATCCTGAAAAACCACGCGTTGCAGCCATCACTGATCGAC-------TTACTTTTAAGAATAATGACAATGGAGCCTGGGTCAGAGGTGGAGACATTATTCTCCAAAATTCAGCgtaattgatgtcttcagcatagagaatttagtgagaatttagattggtct Alignment from Exonerate_protein2genome GTTTCGGCCCCATCAGGATGCA------------GACCCTGAGAAGCCACGCGTTGCAGCCATCATCGACAGGCTCATTGCTTTTAAGAACAATGACAACGGAGCCTGGGTCAGAGGAGGAGATATTATTGTTCAGAATTCAGC gttcccaactggatttcaggcttgtggtcttattatcttattttgtctagGTTTAGGCCCCACCAGGATGCCGATGCTGAAAATGATCCTGAAAAACCACGCGTTGCAGCCATCACTGATCGACTT---ACTTTTAAGAATAATGACAATGGAGCCTGGGTCAGAGGTGGAGACATTATTCTCCAAAATTCAGCgtaattgatgtcttcagcatagagaatttagtgagaatttagattggtct Alignment from Exonerate_coding2genome GTTTCGGCCCCATCAGGATGCA------------GACCCTGAGAAGCCACGCGTTGCAGCCATCATCGACAGGCTCATTGCTTTTAAGAACAATGACAACGGAGCCTGGGTCAGAGGAGGAGATATTATTGTTCAGAATTCAGC gttcccaactggatttcaggcttgtggtcttattatcttattttgtctagGTTTAGGCCCCACCAGGATGCCGATGCTGAAAATGATCCTGAAAAACCACGCGTTGCAGCCATCACTGATCGACTT---ACTTTTAAGAATAATGACAATGGAGCCTGGGTCAGAGGTGGAGACATTATTCTCCAAAATTCAGCgtaattgatgtcttcagcatagagaatttagtgagaatttagattggtct Alignment from GeneWise GTTTCGGCCCCATCAGGATGCAGAC------------CCTGAGAAGCCACGCGTTGCAGCCATCATCGACAGGCTCATTGCTTTTAAGAACAATGACAACGGAGCCTGGGTCAGAGGAGGAGATATTATTGTTCAGAATTCAGC gttcccaactggatttcaggcttgtggtcttattatcttattttgtctagGTTTAGGCCCCACCAGGATGCCGATGCTGAAAATGATCCTGAAAAACCACGCGTTGCAGCCATCACTGATCGACTT---ACTTTTAAGAATAATGACAATGGAGCCTGGGTCAGAGGTGGAGACATTATTCTCCAAAATTCAGCgtaattgatgtcttcagcatagagaatttagtgagaatttagattggtct #### Tmem2_ID4952_13 --> 1 - 2 Original Alignment aTTTGCAGATAACGGAAAGGGGCTGACCTTTGCCag cttggtggctttcaatttctccttttgggaaagtccttaatttattttagaTTTGCAGATAATGGAAAAGGGCTGGCCTTTGTCaggtaggaaatgttaaggcttgcactgctatccaaggtagggtagctcttgt Alignment from CESAR aTTTGCAGATAACGGAAAGGGGCTGACCTTTGCCag cttggtggctttcaatttctccttttgggaaagtccttaatttattttagaTTTGCAGATAATGGAAAAGGGCTGGCCTTTGTCaggtaggaaatgttaaggcttgcactgctatccaaggtagggtagctcttgt Alignment from Spaln_aa2Genome ATTTGCAGATAACGGAAAGGGGCTGACCTTTGCCAG cttggtggctttcaatttctccttttgggaaagtccttaatttattttagATTTGCAGATAATGGAAAAGGGCTGGCCTTTGTCAGgtaggaaatgttaaggcttgcactgctatccaaggtagggtagctcttgt Alignment from Spaln_nt2Genome ATTTGCAGATAACGGAAAGGGGCTGACCTTTGCCAG cttggtggctttcaatttctccttttgggaaagtccttaatttattttagATTTGCAGATAATGGAAAAGGGCTGGCCTTTGTCAGgtaggaaatgttaaggcttgcactgctatccaaggtagggtagctcttgt Alignment from Pairagon ATTTGCAGATAACGGAAAGGGGCTGACCTTTGCCAG cttggtggctttcaatttctccttttgggaaagtccttaatttattttagATTTGCAGATAATGGAAAAGGGCTGGCCTTTGTCAGgtaggaaatgttaaggcttgcactgctatccaaggtagggtagctcttgt Alignment from Exonerate_protein2genome ATTTGCAGATAACGGAAAGGGGCTGACCTTTGCCAG cttggtggctttcaatttctccttttgggaaagtccttaatttattttagATTTGCAGATAATGGAAAAGGGCTGGCCTTTGTCAGgtaggaaatgttaaggcttgcactgctatccaaggtagggtagctcttgt Alignment from Exonerate_coding2genome cttggtggctttcaatttctccttttgggaaagtccttaatttattttagatttgcagataatggaaaagggctggcctttgtcaggtaggaaatgttaaggcttgcactgctatccaaggtagggtagctcttgt Alignment from GeneWise ATTTGCAGATAACGGAAAGGGGCTGACCTTTGCCAG cttggtggctttcaatttctccttttgggaaagtccttaatttattttagATTTGCAGATAATGGAAAAGGGCTGGCCTTTGTCAGgtaggaaatgttaaggcttgcactgctatccaaggtagggtagctcttgt #### Tmem2_ID4954_15 --> 1 - 0 Original Alignment gACATTCCCAATCCGAGGCTTTCAGATTTACGATGGGCCTATTCATCTCACAAAGAGTACTTTCAAAAAGTATGTGCCAACTCCAGACAGGTACAGCAGTGCAATTGGCTTCCTCATGAAGAATTCCTGGCAGACAACACCCAGGAATAACGTTTCCCTTGTGAAGTTTGGTCCACAG ttagcagggtcggtctttagtagctcttataaattatttgtctctgtcaggACATTTCCAATCCGAGGTTTTGAAATTTATGATGGTTCCATTTATCTCACAAAAAGCACTTTTAAAAAGTATGTGCCCACTCCTGACAGGTACAGCAGTGCAATTGGGTTCCTCATGAAGAATTCCTGGCAGACAGCACCCCGGAATAATGTTTCACTGGTGCAGTTTGGC---CAAgtaagacttattacatctctctggcatagactggtaagagaagggcaagg Alignment from CESAR gACATTCCCAATCCGAGGCTTTCAGATTTACGATGGGCCTATTCATCTCACAAAGAGTACTTTCAAAAAGTATGTGCCAACTCCAGACAGGTACAGCAGTGCAATTGGCTTCCTCATGAAGAATTCCTGGCAGACAACACCCAGGAATAACGTTTCCCTTGTGAAGTTTGGTCCACAG ttagcagggtcggtctttagtagctcttataaattatttgtctctgtcaggACATTTCCAATCCGAGGTTTTGAAATTTATGATGGTTCCATTTATCTCACAAAAAGCACTTTTAAAAAGTATGTGCCCACTCCTGACAGGTACAGCAGTGCAATTGGGTTCCTCATGAAGAATTCCTGGCAGACAGCACCCCGGAATAATGTTTCACTGGTGCAGTTTGGC---CAAgtaagacttattacatctctctggcatagactggtaagagaagggcaagg Alignment from Spaln_aa2Genome GACATTCCCAATCCGAGGCTTTCAGATTTACGATGGGCCTATTCATCTCACAAAGAGTACTTTCAAAAAGTATGTGCCAACTCCAGACAGGTACAGCAGTGCAATTGGCTTCCTCATGAAGAATTCCTGGCAGACAACACCCAGGAATAACGTTTCCCTTGTGAAGTTTGGTCCACAG ttagcagggtcggtctttagtagctcttataaattatttgtctctgtcagGACATTTCCAATCCGAGGTTTTGAAATTTATGATGGTTCCATTTATCTCACAAAAAGCACTTTTAAAAAGTATGTGCCCACTCCTGACAGGTACAGCAGTGCAATTGGGTTCCTCATGAAGAATTCCTGGCAGACAGCACCCCGGAATAATGTTTCACTGGTGCAGTTTGGC---CAAgtaagacttattacatctctctggcatagactggtaagagaagggcaagg Alignment from Spaln_nt2Genome GACATTCCCAATCCGAGGCTTTCAGATTTACGATGGGCCTATTCATCTCACAAAGAGTACTTTCAAAAAGTATGTGCCAACTCCAGACAGGTACAGCAGTGCAATTGGCTTCCTCATGAAGAATTCCTGGCAGACAACACCCAGGAATAACGTTTCCCTTGTGAAGTTTGGTCCA ttagcagggtcggtctttagtagctcttataaattatttgtctctgtcagGACATTTCCAATCCGAGGTTTTGAAATTTATGATGGTTCCATTTATCTCACAAAAAGCACTTTTAAAAAGTATGTGCCCACTCCTGACAGGTACAGCAGTGCAATTGGGTTCCTCATGAAGAATTCCTGGCAGACAGCACCCCGGAATAATGTTTCACTGGTGCAGTTTGGCCAAgtaagacttattacatctctctggcatagactggtaagagaagggcaagg Alignment from Pairagon GACATTCCCAATCCGAGGCTTTCAGATTTACGATGGGCCTATTCATCTCACAAAGAGTACTTTCAAAAAGTATGTGCCAACTCCAGACAGGTACAGCAGTGCAATTGGCTTCCTCATGAAGAATTCCTGGCAGACAACACCCAGGAATAACGTTTCCCTTGTGAAGTTTGGTCCA ttagcagggtcggtctttagtagctcttataaattatttgtctctgtcagGACATTTCCAATCCGAGGTTTTGAAATTTATGATGGTTCCATTTATCTCACAAAAAGCACTTTTAAAAAGTATGTGCCCACTCCTGACAGGTACAGCAGTGCAATTGGGTTCCTCATGAAGAATTCCTGGCAGACAGCACCCCGGAATAATGTTTCACTGGTGCAGTTTGGCCAAgtaagacttattacatctctctggcatagactggtaagagaagggcaagg Alignment from Exonerate_protein2genome GACATTCCCAATCCGAGGCTTTCAGATTTACGATGGGCCTATTCATCTCACAAAGAGTACTTTCAAAAAGTATGTGCCAACTCCAGACAGGTACAGCAGTGCAATTGGCTTCCTCATGAAGAATTCCTGGCAGACAACACCCAGGAATAACGTTTCCCTTGTGAAGTTTGGTCCACAG ttagcagggtcggtctttagtagctcttataaattatttgtctctgtcagGACATTTCCAATCCGAGGTTTTGAAATTTATGATGGTTCCATTTATCTCACAAAAAGCACTTTTAAAAAGTATGTGCCCACTCCTGACAGGTACAGCAGTGCAATTGGGTTCCTCATGAAGAATTCCTGGCAGACAGCACCCCGGAATAATGTTTCACTGGTGCAGTTTGGC---CAAgtaagacttattacatctctctggcatagactggtaagagaagggcaagg Alignment from Exonerate_coding2genome GACATTCCCAATCCGAGGCTTTCAGATTTACGATGGGCCTATTCATCTCACAAAGAGTACTTTCAAAAAGTATGTGCCAACTCCAGACAGGTACAGCAGTGCAATTGGCTTCCTCATGAAGAATTCCTGGCAGACAACACCCAGGAATAACGTTTCCCTTGTGAAGTTTGGTCCACAG ttagcagggtcggtctttagtagctcttataaattatttgtctctgtcagGACATTTCCAATCCGAGGTTTTGAAATTTATGATGGTTCCATTTATCTCACAAAAAGCACTTTTAAAAAGTATGTGCCCACTCCTGACAGGTACAGCAGTGCAATTGGGTTCCTCATGAAGAATTCCTGGCAGACAGCACCCCGGAATAATGTTTCACTGGTGCAGTTTGGC---CAAgtaagacttattacatctctctggcatagactggtaagagaagggcaagg Alignment from GeneWise GACATTCCCAATCCGAGGCTTTCAGATTTACGATGGGCCTATTCATCTCACAAAGAGTACTTTCAAAAAGTATGTGCCAACTCCAGACAGGTACAGCAGTGCAATTGGCTTCCTCATGAAGAATTCCTGGCAGACAACACCCAGGAATAACGTTTCCCTTGTGAAGTTTGGTCCACAG ttagcagggtcggtctttagtagctcttataaattatttgtctctgtcagGACATTTCCAATCCGAGGTTTTGAAATTTATGATGGTTCCATTTATCTCACAAAAAGCACTTTTAAAAAGTATGTGCCCACTCCTGACAGGTACAGCAGTGCAATTGGGTTCCTCATGAAGAATTCCTGGCAGACAGCACCCCGGAATAATGTTTCACTGGTGCAGTTTGGC---CAAgtaagacttattacatctctctggcatagactggtaagagaagggcaagg #### Tmem2_ID4965_22 --> 1 - 1 Original Alignment gTCAATCGTTCTGTTGAGCACAAGAGGAGAAATTAAGCAGCTGAATATCTCGGATTCATTAGCAGTTCTGGGACTGGCCAAGCCAGCACATCTGTACAGCAAAg gtcacagctgactagccctcaagcaatccccagtgctttgcccttttcaggACTATTGTCTTACTGGGCACAAGGGAAGAAATCAAACAGCTGAACATCTCAGATTCATCAGCAGTTCTAGGATTGGCAAAGCCAACCCATCTGTATAGCAAAggtcaggactggcagcaccttacaggtttactggaattgtggggatattca Alignment from CESAR gTCAATCGTTCTGTTGAGCACAAGAGGAGAAATTAAGCAGCTGAATATCTCGGATTCATTAGCAGTTCTGGGACTGGCCAAGCCAGCACATCTGTACAGCAAAg gtcacagctgactagccctcaagcaatccccagtgctttgcccttttcaggACTATTGTCTTACTGGGCACAAGGGAAGAAATCAAACAGCTGAACATCTCAGATTCATCAGCAGTTCTAGGATTGGCAAAGCCAACCCATCTGTATAGCAAAggtcaggactggcagcaccttacaggtttactggaattgtggggatattca Alignment from Spaln_aa2Genome GTCAATCGTTCTGTTGAGCACAAGAGGAGAAATTAAGCAGCTGAATATCTCGGATTCATTAGCAGTTCTGGGACTGGCCAAGCCAGCACATCTGTACAGCAAAG gtcacagctgactagccctcaagcaatccccagtgctttgcccttttcagGACTATTGTCTTACTGGGCACAAGGGAAGAAATCAAACAGCTGAACATCTCAGATTCATCAGCAGTTCTAGGATTGGCAAAGCCAACCCATCTGTATAGCAAAGgtcaggactggcagcaccttacaggtttactggaattgtggggatattca Alignment from Spaln_nt2Genome GTCAATCGTTCTGTTGAGCACAAGAGGAGAAATTAAGCAGCTGAATATCTCGGATTCATTAGCAGTTCTGGGACTGGCCAAGCCAGCACATCTGTACAGCAAAG gtcacagctgactagccctcaagcaatccccagtgctttgcccttttcagGACTATTGTCTTACTGGGCACAAGGGAAGAAATCAAACAGCTGAACATCTCAGATTCATCAGCAGTTCTAGGATTGGCAAAGCCAACCCATCTGTATAGCAAAGgtcaggactggcagcaccttacaggtttactggaattgtggggatattca Alignment from Pairagon GTCAATCGTTCTGTTGAGCACAAGAGGAGAAATTAAGCAGCTGAATATCTCGGATTCATTAGCAGTTCTGGGACTGGCCAAGCCAGCACATCTGTACAGCAAAG gtcacagctgactagccctcaagcaatccccagtgctttgcccttttcagGACTATTGTCTTACTGGGCACAAGGGAAGAAATCAAACAGCTGAACATCTCAGATTCATCAGCAGTTCTAGGATTGGCAAAGCCAACCCATCTGTATAGCAAAGgtcaggactggcagcaccttacaggtttactggaattgtggggatattca Alignment from Exonerate_protein2genome GTCAATCGTTCTGTTGAGCACAAGAGGAGAAATTAAGCAGCTGAATATCTCGGATTCATTAGCAGTTCTGGGACTGGCCAAGCCAGCACATCTGTACAGCAAAG gtcacagctgactagccctcaagcaatccccagtgctttgcccttttcagGACTATTGTCTTACTGGGCACAAGGGAAGAAATCAAACAGCTGAACATCTCAGATTCATCAGCAGTTCTAGGATTGGCAAAGCCAACCCATCTGTATAGCAAAGgtcaggactggcagcaccttacaggtttactggaattgtggggatattca Alignment from Exonerate_coding2genome gtcacagctgactagccctcaagcaatccccagtgctttgcccttttcaggactattgtcttactgggcacaagggaagaaatcaaacagctgaacatctcagattcatcagcagttctaggattggcaaagccaacccatctgtatagcaaaggtcaggactggcagcaccttacaggtttactggaattgtggggatattca Alignment from GeneWise GTCAATCGTTCTGTTGAGCACAAGAGGAGAAATTAAGCAGCTGAATATCTCGGATTCATTAGCAGTTCTGGGACTGGCCAAGCCAGCACATCTGTACAGCAAAG gtcacagctgactagccctcaagcaatccccagtgctttgcccttttcagGACTATTGTCTTACTGGGCACAAGGGAAGAAATCAAACAGCTGAACATCTCAGATTCATCAGCAGTTCTAGGATTGGCAAAGCCAACCCATCTGTATAGCAAAGgtcaggactggcagcaccttacaggtttactggaattgtggggatattca #### Tnks2_ID7182_3 --> 2 - 1 Original Alignment tgCTTTTACAGCATGGAGCTGAGCCAACCATCCGAAATACAGATGGAAGGACAGCATTGGATTTAGCAGACCCATCTGCCAAAGCTGTTCTGACTg tcaaagccttattgctttccccagcttatgtgaatcctttgtgtccatagttCTATTACAGCATGGTGCCAAACCCACTGTGTGGAATACAGATGGGAGGAGGTCGTTGGATTTAGCAGATCCATCTGCCAAGGCTGTGCTGACTggtgtgttaatactcttgaactcttctcaaccagcttcaaaagcaattggc Alignment from CESAR tgCTTTTACAGCATGGAGCTGAGCCAACCATCCGAAATACAGATGGAAGGACAGCATTGGATTTAGCAGACCCATCTGCCAAAGCTGTTCTGACTg tcaaagccttattgctttccccagcttatgtgaatcctttgtgtccatagttCTATTACAGCATGGTGCCAAACCCACTGTGTGGAATACAGATGGGAGGAGGTCGTTGGATTTAGCAGATCCATCTGCCAAGGCTGTGCTGACTggtgtgttaatactcttgaactcttctcaaccagcttcaaaagcaattggc Alignment from Spaln_aa2Genome TGCTTTTACAGCATGGAGCTGAGCCAACCATCCGAAATACAGATGGAAGGACAGCATTGGATTTAGCAGACCCATCTGCCAAAGCTGTTCTGACTG tcaaagccttattgctttccccagcttatgtgaatcctttgtgtccatagTTCTATTACAGCATGGTGCCAAACCCACTGTGTGGAATACAGATGGGAGGAGGTCGTTGGATTTAGCAGATCCATCTGCCAAGGCTGTGCTGACTGgtgtgttaatactcttgaactcttctcaaccagcttcaaaagcaattggc Alignment from Spaln_nt2Genome TGCTTTTACAGCATGGAGCTGAGCCAACCATCCGAAATACAGATGGAAGGACAGCATTGGATTTAGCAGACCCATCTGCCAAAGCTGTTCTGACTG tcaaagccttattgctttccccagcttatgtgaatcctttgtgtccatagTTCTATTACAGCATGGTGCCAAACCCACTGTGTGGAATACAGATGGGAGGAGGTCGTTGGATTTAGCAGATCCATCTGCCAAGGCTGTGCTGACTGgtgtgttaatactcttgaactcttctcaaccagcttcaaaagcaattggc Alignment from Pairagon TGCTTTTACAGCATGGAGCTGAGCCAACCATCCGAAATACAGATGGAAGGACAGCATTGGATTTAGCAGACCCATCTGCCAAAGCTGTTCTGACTG tcaaagccttattgctttccccagcttatgtgaatcctttgtgtccatagTTCTATTACAGCATGGTGCCAAACCCACTGTGTGGAATACAGATGGGAGGAGGTCGTTGGATTTAGCAGATCCATCTGCCAAGGCTGTGCTGACTGgtgtgttaatactcttgaactcttctcaaccagcttcaaaagcaattggc Alignment from Exonerate_protein2genome TGCTTTTACAGCATGGAGCTGAGCCAACCATCCGAAATACAGATGGAAGGACAGCATTGGATTTAGCAGACCCATCTGCCAAAGCTGTTCTGACTG tcaaagccttattgctttccccagcttatgtgaatcctttgtgtccatagTTCTATTACAGCATGGTGCCAAACCCACTGTGTGGAATACAGATGGGAGGAGGTCGTTGGATTTAGCAGATCCATCTGCCAAGGCTGTGCTGACTGgtgtgttaatactcttgaactcttctcaaccagcttcaaaagcaattggc Alignment from Exonerate_coding2genome TGCTTTTACAGCATGGAGCTGAGCCAACCATCCGAAATACAGATGGAAGGACAGCATTGGATTTAGCAGACCCATCTGCCAAAGCTGTTCTGACTG tcaaagccttattgctttccccagcttatgtgaatcctttgtgtccatagTTCTATTACAGCATGGTGCCAAACCCACTGTGTGGAATACAGATGGGAGGAGGTCGTTGGATTTAGCAGATCCATCTGCCAAGGCTGTGCTGACTGgtgtgttaatactcttgaactcttctcaaccagcttcaaaagcaattggc Alignment from GeneWise TGCTTTTACAGCATGGAGCTGAGCCAACCATCCGAAATACAGATGGAAGGACAGCATTGGATTTAGCAGACCCATCTGCCAAAGCTGTTCTGACTGGT tcaaagccttattgctttccccagcttatgtgaatcctttgtgtccatagTTCTATTACAGCATGGTGCCAAACCCACTGTGTGGAATACAGATGGGAGGAGGTCGTTGGATTTAGCAGATCCATCTGCCAAGGCTGTGCTGACTGGTgtgttaatactcttgaactcttctcaaccagcttcaaaagcaattggc #### Tnks2_ID7185_6 --> 0 - 2 Original Alignment TCAACTCCATTGCATTTGGCAGCAGGATACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGGGCTGATGTCCATGCTAAAGATAAAgg tgcctggaaaatcatgtatgactgcatcacccgcatttgcctttgcctagTCAACTCCATTGCATTTGGCAGCAGGGTACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGAGCTGATGTCCATGCTAAAGATAAAgggtgagtctgccattttgggtatagattgatcacatattgagatgtggtaa Alignment from CESAR TCAACTCCATTGCATTTGGCAGCAGGATACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGGGCTGATGTCCATGCTAAAGATAAAgg tgcctggaaaatcatgtatgactgcatcacccgcatttgcctttgcctagTCAACTCCATTGCATTTGGCAGCAGGGTACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGAGCTGATGTCCATGCTAAAGATAAAgggtgagtctgccattttgggtatagattgatcacatattgagatgtggtaa Alignment from Spaln_aa2Genome TCAACTCCATTGCATTTGGCAGCAGGATACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGGGCTGATGTCCATGCTAAAGATAAAGG tgcctggaaaatcatgtatgactgcatcacccgcatttgcctttgcctagTCAACTCCATTGCATTTGGCAGCAGGGTACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGAGCTGATGTCCATGCTAAAGATAAAGGgtgagtctgccattttgggtatagattgatcacatattgagatgtggtaa Alignment from Spaln_nt2Genome TCAACTCCATTGCATTTGGCAGCAGGATACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGGGCTGATGTCCATGCTAAAGATAAAGG tgcctggaaaatcatgtatgactgcatcacccgcatttgcctttgcctagTCAACTCCATTGCATTTGGCAGCAGGGTACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGAGCTGATGTCCATGCTAAAGATAAAGGgtgagtctgccattttgggtatagattgatcacatattgagatgtggtaa Alignment from Pairagon TCAACTCCATTGCATTTGGCAGCAGGATACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGGGCTGATGTCCATGCTAAAGATAAAGG tgcctggaaaatcatgtatgactgcatcacccgcatttgcctttgcctagTCAACTCCATTGCATTTGGCAGCAGGGTACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGAGCTGATGTCCATGCTAAAGATAAAGGgtgagtctgccattttgggtatagattgatcacatattgagatgtggtaa Alignment from Exonerate_protein2genome TCAACTCCATTGCATTTGGCAGCAGGATACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGGGCTGATGTCCATGCTAAAGATAAAGG tgcctggaaaatcatgtatgactgcatcacccgcatttgcctttgcctagTCAACTCCATTGCATTTGGCAGCAGGGTACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGAGCTGATGTCCATGCTAAAGATAAAGGgtgagtctgccattttgggtatagattgatcacatattgagatgtggtaa Alignment from Exonerate_coding2genome TCAACTCCATTGCATTTGGCAGCAGGATACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGGGCTGATGTCCATGCTAAAGATAAAGG tgcctggaaaatcatgtatgactgcatcacccgcatttgcctttgcctagTCAACTCCATTGCATTTGGCAGCAGGGTACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGAGCTGATGTCCATGCTAAAGATAAAGGgtgagtctgccattttgggtatagattgatcacatattgagatgtggtaa Alignment from GeneWise TCAACTCCATTGCATTTGGCAGCAGGATACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGGGCTGATGTCCATGCTAAAGATAAAGG tgcctggaaaatcatgtatgactgcatcacccgcatttgcctttgcctagTCAACTCCATTGCATTTGGCAGCAGGGTACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATGGAGCTGATGTCCATGCTAAAGATAAAGGgtgagtctgccattttgggtatagattgatcacatattgagatgtggtaa #### Tnks2_ID7188_9 --> 2 - 0 Original Alignment atGAATTTAAAGGCCATTCATTGCTGCAAGCTGCACGAGAAGCTGATGTTACAAGAATCAAAAAACAT------CTTTCTCTGGAAATGGTGAATTTCAAACATCCTCAGACACATGAAACAGCACTG tataggttctctacctcaatataatgaatctcacactcagtctgttccagatGAGTTTAAGGGACAGTTGCTCCTTCATGCTGTGCGTAAAACAGGTGTCACAGGAATTAAAAAACAGAAATGTCTGCCACTGGAGATGGTCAATTTCAAGCATCCTCAGACACATAAAATGACGCTGgtaaattcttacacacgaggaactaaaaagcatgtagtgccctgcaattt Alignment from CESAR atGAATTTAAAGGCCATTCATTGCTGCAAGCTGCACGAGAAGCTGATGTTACAAGAATCAAAAAACAT------CTTTCTCTGGAAATGGTGAATTTCAAACATCCTCAGACACATGAAACAGCACTG tataggttctctacctcaatataatgaatctcacactcagtctgttccagatGAGTTTAAGGGACAGTTGCTCCTTCATGCTGTGCGTAAAACAGGTGTCACAGGAATTAAAAAACAGAAATGTCTGCCACTGGAGATGGTCAATTTCAAGCATCCTCAGACACATAAAATGACGCTGgtaaattcttacacacgaggaactaaaaagcatgtagtgccctgcaattt Alignment from Spaln_aa2Genome ATGAATTTAAAGGCCATTCATTGCTGCAAGCTGCACGAGAAGCTGATGTTACAAGAATCAAAAAACAT------CTTTCTCTGGAAATGGTGAATTTCAAACATCCTCAGACACATGAAACAGCACTG tataggttctctacctcaatataatgaatctcacactcagtctgttccagATGAGTTTAAGGGACAGTTGCTCCTTCATGCTGTGCGTAAAACAGGTGTCACAGGAATTAAAAAACAGAAATGTCTGCCACTGGAGATGGTCAATTTCAAGCATCCTCAGACACATAAAATGACGCTGgtaaattcttacacacgaggaactaaaaagcatgtagtgccctgcaattt Alignment from Spaln_nt2Genome ATGAATTTAAAGGCCATTCATTGCTGCAAGCTGCACGAGAAGCTGATGTTACAAGAATCAAAAAACA------TCTTTCTCTGGAAATGGTGAATTTCAAACATCCTCAGACACATGAAACAGCACTG tataggttctctacctcaatataatgaatctcacactcagtctgttccagATGAGTTTAAGGGACAGTTGCTCCTTCATGCTGTGCGTAAAACAGGTGTCACAGGAATTAAAAAACAGAAATGTCTGCCACTGGAGATGGTCAATTTCAAGCATCCTCAGACACATAAAATGACGCTGgtaaattcttacacacgaggaactaaaaagcatgtagtgccctgcaattt Alignment from Pairagon ATGAATTTAAAGGCCATTCATTGCTGCAAGCTGCACGAGAAGCTGATGTTACAAGAATCAAAAAACA------TCTTTCTCTGGAAATGGTGAATTTCAAACATCCTCAGACACATGAAACAGCACTG tataggttctctacctcaatataatgaatctcacactcagtctgttccagATGAGTTTAAGGGACAGTTGCTCCTTCATGCTGTGCGTAAAACAGGTGTCACAGGAATTAAAAAACAGAAATGTCTGCCACTGGAGATGGTCAATTTCAAGCATCCTCAGACACATAAAATGACGCTGgtaaattcttacacacgaggaactaaaaagcatgtagtgccctgcaattt Alignment from Exonerate_protein2genome ATGAATTTAAAGGCCATTCATTGCTGCAAGCTGCACGAGAAGCTGATGTTACAAGAATCAAAAAACAT------CTTTCTCTGGAAATGGTGAATTTCAAACATCCTCAGACACATGAAACAGCACTG tataggttctctacctcaatataatgaatctcacactcagtctgttccagATGAGTTTAAGGGACAGTTGCTCCTTCATGCTGTGCGTAAAACAGGTGTCACAGGAATTAAAAAACAGAAATGTCTGCCACTGGAGATGGTCAATTTCAAGCATCCTCAGACACATAAAATGACGCTGgtaaattcttacacacgaggaactaaaaagcatgtagtgccctgcaattt Alignment from Exonerate_coding2genome ATGAATTTAAAGGCCATTCATTGCTGCAAGCTGCACGAGAAGCTGATGTTACAAGAATCAAAAAACAT------CTTTCTCTGGAAATGGTGAATTTCAAACATCCTCAGACACATGAAACAGCACTG tataggttctctacctcaatataatgaatctcacactcagtctgttccagATGAGTTTAAGGGACAGTTGCTCCTTCATGCTGTGCGTAAAACAGGTGTCACAGGAATTAAAAAACAGAAATGTCTGCCACTGGAGATGGTCAATTTCAAGCATCCTCAGACACATAAAATGACGCTGgtaaattcttacacacgaggaactaaaaagcatgtagtgccctgcaattt Alignment from GeneWise ATGAATTTAAAGGCCATTCATTGCTGCAAGCTGCACGAGAAGCTGATGTTACAAGAATCAAAAAACAT------CTTTCTCTGGAAATGGTGAATTTCAAACATCCTCAGACACATGAAACAGCACTG tataggttctctacctcaatataatgaatctcacactcagtctgttccagATGAGTTTAAGGGACAGTTGCTCCTTCATGCTGTGCGTAAAACAGGTGTCACAGGAATTAAAAAACAGAAATGTCTGCCACTGGAGATGGTCAATTTCAAGCATCCTCAGACACATAAAATGACGCTGgtaaattcttacacacgaggaactaaaaagcatgtagtgccctgcaattt #### Tnks2_ID7190_11 --> 1 - 0 Original Alignment aTTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG ctcttctatcctgggttttttctcacaatgagtatgcttgtttctttcagaTTCTTGACACCTCTGCATGTGGCTTCTGAAAATGCACATAATGACATTGTTGAAGTAGTGGTGAAACATGAAGCGAAGgtaagtgccataaccaacttctaatgattaagttggcagtatttgtttag Alignment from CESAR aTTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG ctcttctatcctgggttttttctcacaatgagtatgcttgtttctttcagaTTCTTGACACCTCTGCATGTGGCTTCTGAAAATGCACATAATGACATTGTTGAAGTAGTGGTGAAACATGAAGCGAAGgtaagtgccataaccaacttctaatgattaagttggcagtatttgtttag Alignment from Spaln_aa2Genome ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG ctcttctatcctgggttttttctcacaatgagtatgcttgtttctttcagATTCTTGACACCTCTGCATGTGGCTTCTGAAAATGCACATAATGACATTGTTGAAGTAGTGGTGAAACATGAAGCGAAGgtaagtgccataaccaacttctaatgattaagttggcagtatttgtttag Alignment from Spaln_nt2Genome ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG ctcttctatcctgggttttttctcacaatgagtatgcttgtttctttcagATTCTTGACACCTCTGCATGTGGCTTCTGAAAATGCACATAATGACATTGTTGAAGTAGTGGTGAAACATGAAGCGAAGgtaagtgccataaccaacttctaatgattaagttggcagtatttgtttag Alignment from Pairagon ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG ctcttctatcctgggttttttctcacaatgagtatgcttgtttctttcagATTCTTGACACCTCTGCATGTGGCTTCTGAAAATGCACATAATGACATTGTTGAAGTAGTGGTGAAACATGAAGCGAAGgtaagtgccataaccaacttctaatgattaagttggcagtatttgtttag Alignment from Exonerate_protein2genome ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG ctcttctatcctgggttttttctcacaatgagtatgcttgtttctttcagATTCTTGACACCTCTGCATGTGGCTTCTGAAAATGCACATAATGACATTGTTGAAGTAGTGGTGAAACATGAAGCGAAGgtaagtgccataaccaacttctaatgattaagttggcagtatttgtttag Alignment from Exonerate_coding2genome ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG ctcttctatcctgggttttttctcacaatgagtatgcttgtttctttcagATTCTTGACACCTCTGCATGTGGCTTCTGAAAATGCACATAATGACATTGTTGAAGTAGTGGTGAAACATGAAGCGAAGgtaagtgccataaccaacttctaatgattaagttggcagtatttgtttag Alignment from GeneWise ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG ctcttctatcctgggttttttctcacaatgagtatgcttgtttctttcagATTCTTGACACCTCTGCATGTGGCTTCTGAAAATGCACATAATGACATTGTTGAAGTAGTGGTGAAACATGAAGCGAAGgtaagtgccataaccaacttctaatgattaagttggcagtatttgtttag #### Tnks2_ID7191_12 --> 0 - 1 Original Alignment GTTAATGCTTTGGATAGTCTTGGACAGACGTCATTACACAGAGCTGCACACTGTGGTCACCTGCAGACCTGCCGCCTGCTCCTGAGCTATGGGTGTGATCCAAACATCATATCCCTTCAGGGTTTCACCGCCTTGCAAATGGGAAATGAAAATGTGCAGCAGCTGCTCCAAg gctaagtaccaaactcatgggatatacatccttaacaagaggctgctcagGTAAATGTATTTGATAGTCTTGGACAAACCTCATTACACCGGGCTGTACACTGTGGGCATCCGCAGACCTGCTGTTTGCTCCTGAGTTATGGGTGTGATCCAAATATCATCTGCCTTAAAGGTTTCACCAGCTTGCAAATGGGTAATGAGAATGTGCAACAGCTGTTGCAAggtaagagaagtggtgatgaaaatctgcaaacaatgttgtggagcaggacc Alignment from CESAR GTTAATGCTTTGGATAGTCTTGGACAGACGTCATTACACAGAGCTGCACACTGTGGTCACCTGCAGACCTGCCGCCTGCTCCTGAGCTATGGGTGTGATCCAAACATCATATCCCTTCAGGGTTTCACCGCCTTGCAAATGGGAAATGAAAATGTGCAGCAGCTGCTCCAAg gctaagtaccaaactcatgggatatacatccttaacaagaggctgctcagGTAAATGTATTTGATAGTCTTGGACAAACCTCATTACACCGGGCTGTACACTGTGGGCATCCGCAGACCTGCTGTTTGCTCCTGAGTTATGGGTGTGATCCAAATATCATCTGCCTTAAAGGTTTCACCAGCTTGCAAATGGGTAATGAGAATGTGCAACAGCTGTTGCAAggtaagagaagtggtgatgaaaatctgcaaacaatgttgtggagcaggacc Alignment from Spaln_aa2Genome GTTAATGCTTTGGATAGTCTTGGACAGACGTCATTACACAGAGCTGCACACTGTGGTCACCTGCAGACCTGCCGCCTGCTCCTGAGCTATGGGTGTGATCCAAACATCATATCCCTTCAGGGTTTCACCGCCTTGCAAATGGGAAATGAAAATGTGCAGCAGCTGCTCCAAG gctaagtaccaaactcatgggatatacatccttaacaagaggctgctcagGTAAATGTATTTGATAGTCTTGGACAAACCTCATTACACCGGGCTGTACACTGTGGGCATCCGCAGACCTGCTGTTTGCTCCTGAGTTATGGGTGTGATCCAAATATCATCTGCCTTAAAGGTTTCACCAGCTTGCAAATGGGTAATGAGAATGTGCAACAGCTGTTGCAAGgtaagagaagtggtgatgaaaatctgcaaacaatgttgtggagcaggacc Alignment from Spaln_nt2Genome GTTAATGCTTTGGATAGTCTTGGACAGACGTCATTACACAGAGCTGCACACTGTGGTCACCTGCAGACCTGCCGCCTGCTCCTGAGCTATGGGTGTGATCCAAACATCATATCCCTTCAGGGTTTCACCGCCTTGCAAATGGGAAATGAAAATGTGCAGCAGCTGCTCCAAG gctaagtaccaaactcatgggatatacatccttaacaagaggctgctcagGTAAATGTATTTGATAGTCTTGGACAAACCTCATTACACCGGGCTGTACACTGTGGGCATCCGCAGACCTGCTGTTTGCTCCTGAGTTATGGGTGTGATCCAAATATCATCTGCCTTAAAGGTTTCACCAGCTTGCAAATGGGTAATGAGAATGTGCAACAGCTGTTGCAAGgtaagagaagtggtgatgaaaatctgcaaacaatgttgtggagcaggacc Alignment from Pairagon GTTAATGCTTTGGATAGTCTTGGACAGACGTCATTACACAGAGCTGCACACTGTGGTCACCTGCAGACCTGCCGCCTGCTCCTGAGCTATGGGTGTGATCCAAACATCATATCCCTTCAGGGTTTCACCGCCTTGCAAATGGGAAATGAAAATGTGCAGCAGCTGCTCCAAG gctaagtaccaaactcatgggatatacatccttaacaagaggctgctcagGTAAATGTATTTGATAGTCTTGGACAAACCTCATTACACCGGGCTGTACACTGTGGGCATCCGCAGACCTGCTGTTTGCTCCTGAGTTATGGGTGTGATCCAAATATCATCTGCCTTAAAGGTTTCACCAGCTTGCAAATGGGTAATGAGAATGTGCAACAGCTGTTGCAAGgtaagagaagtggtgatgaaaatctgcaaacaatgttgtggagcaggacc Alignment from Exonerate_protein2genome GTTAATGCTTTGGATAGTCTTGGACAGACGTCATTACACAGAGCTGCACACTGTGGTCACCTGCAGACCTGCCGCCTGCTCCTGAGCTATGGGTGTGATCCAAACATCATATCCCTTCAGGGTTTCACCGCCTTGCAAATGGGAAATGAAAATGTGCAGCAGCTGCTCCAAG gctaagtaccaaactcatgggatatacatccttaacaagaggctgctcagGTAAATGTATTTGATAGTCTTGGACAAACCTCATTACACCGGGCTGTACACTGTGGGCATCCGCAGACCTGCTGTTTGCTCCTGAGTTATGGGTGTGATCCAAATATCATCTGCCTTAAAGGTTTCACCAGCTTGCAAATGGGTAATGAGAATGTGCAACAGCTGTTGCAAGgtaagagaagtggtgatgaaaatctgcaaacaatgttgtggagcaggacc Alignment from Exonerate_coding2genome GTTAATGCTTTGGATAGTCTTGGACAGACGTCATTACACAGAGCTGCACACTGTGGTCACCTGCAGACCTGCCGCCTGCTCCTGAGCTATGGGTGTGATCCAAACATCATATCCCTTCAGGGTTTCACCGCCTTGCAAATGGGAAATGAAAATGTGCAGCAGCTGCTCCAAG gctaagtaccaaactcatgggatatacatccttaacaagaggctgctcagGTAAATGTATTTGATAGTCTTGGACAAACCTCATTACACCGGGCTGTACACTGTGGGCATCCGCAGACCTGCTGTTTGCTCCTGAGTTATGGGTGTGATCCAAATATCATCTGCCTTAAAGGTTTCACCAGCTTGCAAATGGGTAATGAGAATGTGCAACAGCTGTTGCAAGgtaagagaagtggtgatgaaaatctgcaaacaatgttgtggagcaggacc Alignment from GeneWise GTTAATGCTTTGGATAGTCTTGGACAGACGTCATTACACAGAGCTGCACACTGTGGTCACCTGCAGACCTGCCGCCTGCTCCTGAGCTATGGGTGTGATCCAAACATCATATCCCTTCAGGGTTTCACCGCCTTGCAAATGGGAAATGAAAATGTGCAGCAGCTGCTCCAAG gctaagtaccaaactcatgggatatacatccttaacaagaggctgctcagGTAAATGTATTTGATAGTCTTGGACAAACCTCATTACACCGGGCTGTACACTGTGGGCATCCGCAGACCTGCTGTTTGCTCCTGAGTTATGGGTGTGATCCAAATATCATCTGCCTTAAAGGTTTCACCAGCTTGCAAATGGGTAATGAGAATGTGCAACAGCTGTTGCAAGgtaagagaagtggtgatgaaaatctgcaaacaatgttgtggagcaggacc #### Tnks2_ID7197_18 --> 0 - 0 Original Alignment CATGTAGATGTAGCAGCTTTGCTGATAAAGTACAATGCGTGTGTCAATGCCACGGACAAATGGGCTTTCACACCGTTACATGAAGCAGCCCAAAAGGGACGGACACAGCTTTGTGCTTTATTGTTGGCCCATGGAGCTGATCCTACTCTTAAAAATCAAGAAGGACAAACACCTTTAGATTTAGTTTCA gtttaatgtgagatcaagtcaatgagtcatgttgaattccccctctgcagCATGTAGATGTTGCAGCATTGTTGATAAAATTTAATGCCTGTGTCAATGCCACAGACAAATGGGCTTTTATACCATTACATGAGGCAGCCCGCAAAGGATGGAGACAACTTTGTGCTTTATTTTTGGCCCATGGAGCTGACCCCACTCTAAAAAACCAGGAAGGACAAACATCTTTAGATTTAGTTTCAgtactggccctttctacggaatgaaagcttgatccctgaaagtggactaa Alignment from CESAR CATGTAGATGTAGCAGCTTTGCTGATAAAGTACAATGCGTGTGTCAATGCCACGGACAAATGGGCTTTCACACCGTTACATGAAGCAGCCCAAAAGGGACGGACACAGCTTTGTGCTTTATTGTTGGCCCATGGAGCTGATCCTACTCTTAAAAATCAAGAAGGACAAACACCTTTAGATTTAGTTTCA gtttaatgtgagatcaagtcaatgagtcatgttgaattccccctctgcagCATGTAGATGTTGCAGCATTGTTGATAAAATTTAATGCCTGTGTCAATGCCACAGACAAATGGGCTTTTATACCATTACATGAGGCAGCCCGCAAAGGATGGAGACAACTTTGTGCTTTATTTTTGGCCCATGGAGCTGACCCCACTCTAAAAAACCAGGAAGGACAAACATCTTTAGATTTAGTTTCAgtactggccctttctacggaatgaaagcttgatccctgaaagtggactaa Alignment from Spaln_aa2Genome CATGTAGATGTAGCAGCTTTGCTGATAAAGTACAATGCGTGTGTCAATGCCACGGACAAATGGGCTTTCACACCGTTACATGAAGCAGCCCAAAAGGGACGGACACAGCTTTGTGCTTTATTGTTGGCCCATGGAGCTGATCCTACTCTTAAAAATCAAGAAGGACAAACACCTTTAGATTTAGTTTCA gtttaatgtgagatcaagtcaatgagtcatgttgaattccccctctgcagCATGTAGATGTTGCAGCATTGTTGATAAAATTTAATGCCTGTGTCAATGCCACAGACAAATGGGCTTTTATACCATTACATGAGGCAGCCCGCAAAGGATGGAGACAACTTTGTGCTTTATTTTTGGCCCATGGAGCTGACCCCACTCTAAAAAACCAGGAAGGACAAACATCTTTAGATTTAGTTTCAgtactggccctttctacggaatgaaagcttgatccctgaaagtggactaa Alignment from Spaln_nt2Genome CATGTAGATGTAGCAGCTTTGCTGATAAAGTACAATGCGTGTGTCAATGCCACGGACAAATGGGCTTTCACACCGTTACATGAAGCAGCCCAAAAGGGACGGACACAGCTTTGTGCTTTATTGTTGGCCCATGGAGCTGATCCTACTCTTAAAAATCAAGAAGGACAAACACCTTTAGATTTAGTTTCA gtttaatgtgagatcaagtcaatgagtcatgttgaattccccctctgcagCATGTAGATGTTGCAGCATTGTTGATAAAATTTAATGCCTGTGTCAATGCCACAGACAAATGGGCTTTTATACCATTACATGAGGCAGCCCGCAAAGGATGGAGACAACTTTGTGCTTTATTTTTGGCCCATGGAGCTGACCCCACTCTAAAAAACCAGGAAGGACAAACATCTTTAGATTTAGTTTCAgtactggccctttctacggaatgaaagcttgatccctgaaagtggactaa Alignment from Pairagon CATGTAGATGTAGCAGCTTTGCTGATAAAGTACAATGCGTGTGTCAATGCCACGGACAAATGGGCTTTCACACCGTTACATGAAGCAGCCCAAAAGGGACGGACACAGCTTTGTGCTTTATTGTTGGCCCATGGAGCTGATCCTACTCTTAAAAATCAAGAAGGACAAACACCTTTAGATTTAGTTTCA gtttaatgtgagatcaagtcaatgagtcatgttgaattccccctctgcagCATGTAGATGTTGCAGCATTGTTGATAAAATTTAATGCCTGTGTCAATGCCACAGACAAATGGGCTTTTATACCATTACATGAGGCAGCCCGCAAAGGATGGAGACAACTTTGTGCTTTATTTTTGGCCCATGGAGCTGACCCCACTCTAAAAAACCAGGAAGGACAAACATCTTTAGATTTAGTTTCAgtactggccctttctacggaatgaaagcttgatccctgaaagtggactaa Alignment from Exonerate_protein2genome CATGTAGATGTAGCAGCTTTGCTGATAAAGTACAATGCGTGTGTCAATGCCACGGACAAATGGGCTTTCACACCGTTACATGAAGCAGCCCAAAAGGGACGGACACAGCTTTGTGCTTTATTGTTGGCCCATGGAGCTGATCCTACTCTTAAAAATCAAGAAGGACAAACACCTTTAGATTTAGTTTCA gtttaatgtgagatcaagtcaatgagtcatgttgaattccccctctgcagCATGTAGATGTTGCAGCATTGTTGATAAAATTTAATGCCTGTGTCAATGCCACAGACAAATGGGCTTTTATACCATTACATGAGGCAGCCCGCAAAGGATGGAGACAACTTTGTGCTTTATTTTTGGCCCATGGAGCTGACCCCACTCTAAAAAACCAGGAAGGACAAACATCTTTAGATTTAGTTTCAgtactggccctttctacggaatgaaagcttgatccctgaaagtggactaa Alignment from Exonerate_coding2genome CATGTAGATGTAGCAGCTTTGCTGATAAAGTACAATGCGTGTGTCAATGCCACGGACAAATGGGCTTTCACACCGTTACATGAAGCAGCCCAAAAGGGACGGACACAGCTTTGTGCTTTATTGTTGGCCCATGGAGCTGATCCTACTCTTAAAAATCAAGAAGGACAAACACCTTTAGATTTAGTTTCA gtttaatgtgagatcaagtcaatgagtcatgttgaattccccctctgcagCATGTAGATGTTGCAGCATTGTTGATAAAATTTAATGCCTGTGTCAATGCCACAGACAAATGGGCTTTTATACCATTACATGAGGCAGCCCGCAAAGGATGGAGACAACTTTGTGCTTTATTTTTGGCCCATGGAGCTGACCCCACTCTAAAAAACCAGGAAGGACAAACATCTTTAGATTTAGTTTCAgtactggccctttctacggaatgaaagcttgatccctgaaagtggactaa Alignment from GeneWise CATGTAGATGTAGCAGCTTTGCTGATAAAGTACAATGCGTGTGTCAATGCCACGGACAAATGGGCTTTCACACCGTTACATGAAGCAGCCCAAAAGGGACGGACACAGCTTTGTGCTTTATTGTTGGCCCATGGAGCTGATCCTACTCTTAAAAATCAAGAAGGACAAACACCTTTAGATTTAGTTTCA gtttaatgtgagatcaagtcaatgagtcatgttgaattccccctctgcagCATGTAGATGTTGCAGCATTGTTGATAAAATTTAATGCCTGTGTCAATGCCACAGACAAATGGGCTTTTATACCATTACATGAGGCAGCCCGCAAAGGATGGAGACAACTTTGTGCTTTATTTTTGGCCCATGGAGCTGACCCCACTCTAAAAAACCAGGAAGGACAAACATCTTTAGATTTAGTTTCAgtactggccctttctacggaatgaaagcttgatccctgaaagtggactaa #### Tnks2_ID7198_19 --> 0 - 1 Original Alignment GCAGATGATGTCAGTGCACTCTTGACAGCAGCCATG------CCCCCCTCTGCTCTGCCTACGTGCTACAAA------------CCTCAAGTGCTCAGTGGCGTGAGGGGCCCCGGAGCCACTGCAGATGCTCTGTCTTCAGGTCCGTCCAGCCCATCCAGCCTCTCTGCAGCCAGCAGCCTCGACAACTTATCTGGCAGCTTCTCGGAACTGTCCGCAGTGGTTAGTTCAAGTGCAGCAGAAGGTGCTACTGGTTTGCAAAGAAAAGAGg tagctaattgataattggctcagtgtacattctctgtgtgacttctgcagGGGGATGATGTCAGTGCACTTTTGACA---GGCATGCGGATCCCACATGCTGTTTTGCCTATCTGTTTCAAAATCTGTTTTAAACCTCAGGTGCTAAGTGCTGTAAGAGGTCCTGGGGCCACTGCAGATGCTCTTTCCTCAAGTACATCTAGCCCATCTAGCCTCTCTGCAGCCGGTAGTCTCAAAAACTTATCAGGTAGCTTCTCAGAGTTGTCCACAGTTATT---TCAGGTGCAGCAGAGGGC---ACTGGTCTGCAAAGAAAGGAGggtaagtatttaatcttgcatcactgaagccacttggagacccatttcctg Alignment from CESAR GCAGATGATGTCAGTGCACTCTTGACAGCAGCC---ATGCCCCCCTCTGCTCTGCCTACGTGCTAC------------AAACCTCAAGTGCTCAGTGGCGTGAGGGGCCCCGGAGCCACTGCAGATGCTCTGTCTTCAGGTCCGTCCAGCCCATCCAGCCTCTCTGCAGCCAGCAGCCTCGACAACTTATCTGGCAGCTTCTCGGAACTGTCCGCAGTGGTTAGTTCAAGTGCAGCAGAAGGTGCTACTGGTTTGCAAAGAAAAGAGg tagctaattgataattggctcagtgtacattctctgtgtgacttctgcagGGGGATGATGTCAGTGCACTTTTGACAGGCATGCGGATCCCACATGCTGTTTTGCCTATCTGTTTCAAAATCTGTTTTAAACCTCAGGTGCTAAGTGCTGTAAGAGGTCCTGGGGCCACTGCAGATGCTCTTTCCTCAAGTACATCTAGCCCATCTAGCCTCTCTGCAGCCGGTAGTCTCAAAAACTTATCAGGTAGCTTCTCAGAGTTGTCCACAGTTATT---TCAGGTGCAGCAGAGGGC---ACTGGTCTGCAAAGAAAGGAGggtaagtatttaatcttgcatcactgaagccacttggagacccatttcctg Alignment from Spaln_aa2Genome GCAGATGATGTCAGTGCACTCTTGACAGCAGCC---ATGCCCCCCTCTGCTCTGCCT------------ACGTGCTACAAACCTCAAGTGCTCAGTGGCGTGAGGGGCCCCGGAGCCACTGCAGATGCTCTGTCTTCAGGTCCGTCCAGCCCATCCAGCCTCTCTGCAGCCAGCAGCCTCGACAACTTATCTGGCAGCTTCTCGGAACTGTCCGCAGTGGTTAGTTCAAGTGCAGCAGAAGGTGCTACTGGTTTGCAAAGAAAAGAGG tagctaattgataattggctcagtgtacattctctgtgtgacttctgcagGGGGATGATGTCAGTGCACTTTTGACAGGCATGCGGATCCCACATGCTGTTTTGCCTATCTGTTTCAAAATCTGTTTTAAACCTCAGGTGCTAAGTGCTGTAAGAGGTCCTGGGGCCACTGCAGATGCTCTTTCCTCAAGTACATCTAGCCCATCTAGCCTCTCTGCAGCCGGTAGTCTCAAAAACTTATCAGGTAGCTTCTCAGAGTTGTCCACAGTTATT---TCAGGTGCAGCAGAGGGC---ACTGGTCTGCAAAGAAAGGAGGgtaagtatttaatcttgcatcactgaagccacttggagacccatttcctg Alignment from Spaln_nt2Genome GCAGATGATGTCAGTGCACTCTTGACAG-CAGCC--ATGCCCCCCTCTGCTCTGCCTACGTGCTACAAA------------CCTCAAGTGCTCAGTGGCGTGAGGGGCCCCGGAGCCACTGCAGATGCTCTGTCTTCAGGTCCGTCCAGCCCATCCAGCCTCTCTGCAGCCAGCAGCCTCGACAACTTATCTGGCAGCTTCTCGGAACTGTCCGCAGTGGTTAGTTCAAGTGCAGCAGAAGGTGCTACTGGTTTGCAAAGAAAAGAGG tagctaattgataattggctcagtgtacattctctgtgtgacttctgcagGGGGATGATGTCAGTGCACTTTTGACAGGCATGCGGATCCCACATGCTGTTTTGCCTATCTGTTTCAAAATCTGTTTTAAACCTCAGGTGCTAAGTGCTGTAAGAGGTCCTGGGGCCACTGCAGATGCTCTTTCCTCAAGTACATCTAGCCCATCTAGCCTCTCTGCAGCCGGTAGTCTCAAAAACTTATCAGGTAGCTTCTCAGAGTTGTCCACA---GTTATTTCAGGTGCAGCAGAGGG---CACTGGTCTGCAAAGAAAGGAGGgtaagtatttaatcttgcatcactgaagccacttggagacccatttcctg Alignment from Pairagon GCAGATGATGTCAGTGCACTCTTGACAGCAGCCATGCCCCCCTCTGCTCTGCCTACG-------------------------------------TGCTACAAACCTCAAGTGCTCAGTGGCGTGAGGGGCCCCGGAGCCACTGCAGATGCTCTGTCTTCAGGTCCGTCCAGCCCATCCAGCCTCTCTGCAGCCAGCAGCCTCGACAACTTATCTGGCAGCTTCTCGGAACTGTCCGCAGTGGTTAGTTCAAGTGCAGCAGAAGGTGCTACTGGTTTGCAAAGAAAAGAGG tagctaattgataattggctcagtgtacattctctgtgtgacttctgcagGGGGATGATGTCAGTGCACTTTTGACAG----------------------GCATGCGGATCCCACATGCTGTTTTGCCTATCTGTTTCAAAATCTGTTTTAAACCTCAGGTGCTAAGTGCTGTAAGAGGTCCTGGGGCCACTGCAGATGCTCTTTCCTCAAGTACATCTAGCCCATCTAGCCTCTCTGCAGCCGGTAGTCTCAAAAACTTATCAGGTAGCTTCTCAGAGTTGTCCACA---GTTATTTCAGGTGCAGCAGAGGG---CACTGGTCTGCAAAGAAAGGAGGgtaagtatttaatcttgcatcactgaagccacttggagacccatttcctg Alignment from Exonerate_protein2genome GCAGATGATGTCAGTGCACTCTTGACAGCA---GCCATGCCCCCCTCTGCTCTGCCT------------ACGTGCTACAAACCTCAAGTGCTCAGTGGCGTGAGGGGCCCCGGAGCCACTGCAGATGCTCTGTCTTCAGGTCCGTCCAGCCCATCCAGCCTCTCTGCAGCCAGCAGCCTCGACAACTTATCTGGCAGCTTCTCGGAACTGTCCGCAGTGGTTAGTTCAAGTGCAGCAGAAGGTGCTACTGGTTTGCAAAGAAAAGAGG tagctaattgataattggctcagtgtacattctctgtgtgacttctgcagGGGGATGATGTCAGTGCACTTTTGACAGGCATGCGGATCCCACATGCTGTTTTGCCTATCTGTTTCAAAATCTGTTTTAAACCTCAGGTGCTAAGTGCTGTAAGAGGTCCTGGGGCCACTGCAGATGCTCTTTCCTCAAGTACATCTAGCCCATCTAGCCTCTCTGCAGCCGGTAGTCTCAAAAACTTATCAGGTAGCTTCTCAGAGTTGTCCACAGTTATT---TCAGGTGCAGCAGAGGGC---ACTGGTCTGCAAAGAAAGGAGGgtaagtatttaatcttgcatcactgaagccacttggagacccatttcctg Alignment from Exonerate_coding2genome GCAGATGATGTCAGTGCACTCTTGACAGCA---GCCATGCCCCCCTCTGCTCTGCCT------------ACGTGCTACAAACCTCAAGTGCTCAGTGGCGTGAGGGGCCCCGGAGCCACTGCAGATGCTCTGTCTTCAGGTCCGTCCAGCCCATCCAGCCTCTCTGCAGCCAGCAGCCTCGACAACTTATCTGGCAGCTTCTCGGAACTGTCCGCAGTGGTTAGTTCAAGTGCAGCAGAAGGTGCTACTGGTTTGCAAAGAAAAGAGG tagctaattgataattggctcagtgtacattctctgtgtgacttctgcagGGGGATGATGTCAGTGCACTTTTGACAGGCATGCGGATCCCACATGCTGTTTTGCCTATCTGTTTCAAAATCTGTTTTAAACCTCAGGTGCTAAGTGCTGTAAGAGGTCCTGGGGCCACTGCAGATGCTCTTTCCTCAAGTACATCTAGCCCATCTAGCCTCTCTGCAGCCGGTAGTCTCAAAAACTTATCAGGTAGCTTCTCAGAGTTGTCCACAGTTATT---TCAGGTGCAGCAGAGGGC---ACTGGTCTGCAAAGAAAGGAGGgtaagtatttaatcttgcatcactgaagccacttggagacccatttcctg Alignment from GeneWise GCAGATGATGTCAGTGCACTCTTGACAGCA---GCCATGCCCCCCTCTGCTCTGCCT------------ACGTGCTACAAACCTCAAGTGCTCAGTGGCGTGAGGGGCCCCGGAGCCACTGCAGATGCTCTGTCTTCAGGTCCGTCCAGCCCATCCAGCCTCTCTGCAGCCAGCAGCCTCGACAACTTATCTGGCAGCTTCTCGGAACTGTCCGCAGTGGTTAGTTCAAGTGCAGCAGAAGGTGCTACTGGTTTGCAAAGAAAAGAGG tagctaattgataattggctcagtgtacattctctgtgtgacttctgcagGGGGATGATGTCAGTGCACTTTTGACAGGCATGCGGATCCCACATGCTGTTTTGCCTATCTGTTTCAAAATCTGTTTTAAACCTCAGGTGCTAAGTGCTGTAAGAGGTCCTGGGGCCACTGCAGATGCTCTTTCCTCAAGTACATCTAGCCCATCTAGCCTCTCTGCAGCCGGTAGTCTCAAAAACTTATCAGGTAGCTTCTCAGAGTTGTCCACAGTTATTTCAGGT---GCAGCAGAGGGC---ACTGGTCTGCAAAGAAAGGAGGgtaagtatttaatcttgcatcactgaagccacttggagacccatttcctg #### Tnks2_ID7202_23 --> 0 - 0 Original Alignment ATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCACGCAGGCGGCGTCTTCAACAGATACAACATTCTCAAG caggataattcaatgagattctaataggactcacactcatctcctttcagATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCATGCAGGTGGCGTCTTCAACAGATACAACATTCTTATGgtaaacattgcaggcaaaagcttttccttatcactgccacagtaataact Alignment from CESAR ATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCACGCAGGCGGCGTCTTCAACAGATACAACATTCTCAAG caggataattcaatgagattctaataggactcacactcatctcctttcagATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCATGCAGGTGGCGTCTTCAACAGATACAACATTCTTATGgtaaacattgcaggcaaaagcttttccttatcactgccacagtaataact Alignment from Spaln_aa2Genome ATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCACGCAGGCGGCGTCTTCAACAGATACAACATTCTCAAG caggataattcaatgagattctaataggactcacactcatctcctttcagATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCATGCAGGTGGCGTCTTCAACAGATACAACATTCTTATGgtaaacattgcaggcaaaagcttttccttatcactgccacagtaataact Alignment from Spaln_nt2Genome ATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCACGCAGGCGGCGTCTTCAACAGATACAACATTCTCAAG caggataattcaatgagattctaataggactcacactcatctcctttcagATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCATGCAGGTGGCGTCTTCAACAGATACAACATTCTTATGgtaaacattgcaggcaaaagcttttccttatcactgccacagtaataact Alignment from Pairagon ATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCACGCAGGCGGCGTCTTCAACAGATACAACATTCTCAAG caggataattcaatgagattctaataggactcacactcatctcctttcagATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCATGCAGGTGGCGTCTTCAACAGATACAACATTCTTATGgtaaacattgcaggcaaaagcttttccttatcactgccacagtaataact Alignment from Exonerate_protein2genome ATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCACGCAGGCGGCGTCTTCAACAGATACAACATTCTCAAG caggataattcaatgagattctaataggactcacactcatctcctttcagATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCATGCAGGTGGCGTCTTCAACAGATACAACATTCTTATGgtaaacattgcaggcaaaagcttttccttatcactgccacagtaataact Alignment from Exonerate_coding2genome ATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCACGCAGGCGGCGTCTTCAACAGATACAACATTCTCAAG caggataattcaatgagattctaataggactcacactcatctcctttcagATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCATGCAGGTGGCGTCTTCAACAGATACAACATTCTTATGgtaaacattgcaggcaaaagcttttccttatcactgccacagtaataact Alignment from GeneWise ATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCACGCAGGCGGCGTCTTCAACAGATACAACATTCTCAAG caggataattcaatgagattctaataggactcacactcatctcctttcagATGCAGAGTACTGTGCGGGAGCACAGAGATGGTGGTCATGCAGGTGGCGTCTTCAACAGATACAACATTCTTATGgtaaacattgcaggcaaaagcttttccttatcactgccacagtaataact #### Tnks2_ID7204_25 --> 2 - 2 Original Alignment ggTCTCCTTTTGTGAATGCGATTATCCATAAGGGCTTTGATGAAAGGCATGCATACATAGGTGGCATGTTTGGAGCTGGAATTTATTTTGCTGAGAACTCTTCCAAAAGCAATCAATATGTGTATGGAATTGGAGGTGGCACCGGATGTCCAATTCACAAAGACAGATCGTGTTACATTTGTCACag tatccaaatttgttttttctaaattgttcctgaccatcattgtcatacagggTCTCCCTTTGTGACTGCCATTACTCACAAGGGCTTTGATGAAAGGCATGCATATGTGGCTGGCATCTTTGGGGCTGGAATTTACTTTGCTGAGAACTCCTCTAAGAGCAATCAATATGCATATGGAATTGGGGGAGGCACGGGATGTCCTATTCACAGAGACAGATCTTGCTATATCTGTCATaggtgagtgactcaaggtaattgattatcaagtaatttgagcatcaaccagt Alignment from CESAR ggTCTCCTTTTGTGAATGCGATTATCCATAAGGGCTTTGATGAAAGGCATGCATACATAGGTGGCATGTTTGGAGCTGGAATTTATTTTGCTGAGAACTCTTCCAAAAGCAATCAATATGTGTATGGAATTGGAGGTGGCACCGGATGTCCAATTCACAAAGACAGATCGTGTTACATTTGTCACag tatccaaatttgttttttctaaattgttcctgaccatcattgtcatacagggTCTCCCTTTGTGACTGCCATTACTCACAAGGGCTTTGATGAAAGGCATGCATATGTGGCTGGCATCTTTGGGGCTGGAATTTACTTTGCTGAGAACTCCTCTAAGAGCAATCAATATGCATATGGAATTGGGGGAGGCACGGGATGTCCTATTCACAGAGACAGATCTTGCTATATCTGTCATaggtgagtgactcaaggtaattgattatcaagtaatttgagcatcaaccagt Alignment from Spaln_aa2Genome GGTCTCCTTTTGTGAATGCGATTATCCATAAGGGCTTTGATGAAAGGCATGCATACATAGGTGGCATGTTTGGAGCTGGAATTTATTTTGCTGAGAACTCTTCCAAAAGCAATCAATATGTGTATGGAATTGGAGGTGGCACCGGATGTCCAATTCACAAAGACAGATCGTGTTACATTTGTCACAG tatccaaatttgttttttctaaattgttcctgaccatcattgtcatacagGGTCTCCCTTTGTGACTGCCATTACTCACAAGGGCTTTGATGAAAGGCATGCATATGTGGCTGGCATCTTTGGGGCTGGAATTTACTTTGCTGAGAACTCCTCTAAGAGCAATCAATATGCATATGGAATTGGGGGAGGCACGGGATGTCCTATTCACAGAGACAGATCTTGCTATATCTGTCATAGgtgagtgactcaaggtaattgattatcaagtaatttgagcatcaaccagt Alignment from Spaln_nt2Genome GGTCTCCTTTTGTGAATGCGATTATCCATAAGGGCTTTGATGAAAGGCATGCATACATAGGTGGCATGTTTGGAGCTGGAATTTATTTTGCTGAGAACTCTTCCAAAAGCAATCAATATGTGTATGGAATTGGAGGTGGCACCGGATGTCCAATTCACAAAGACAGATCGTGTTACATTTGTCACAG tatccaaatttgttttttctaaattgttcctgaccatcattgtcatacagGGTCTCCCTTTGTGACTGCCATTACTCACAAGGGCTTTGATGAAAGGCATGCATATGTGGCTGGCATCTTTGGGGCTGGAATTTACTTTGCTGAGAACTCCTCTAAGAGCAATCAATATGCATATGGAATTGGGGGAGGCACGGGATGTCCTATTCACAGAGACAGATCTTGCTATATCTGTCATAGgtgagtgactcaaggtaattgattatcaagtaatttgagcatcaaccagt Alignment from Pairagon GGTCTCCTTTTGTGAATGCGATTATCCATAAGGGCTTTGATGAAAGGCATGCATACATAGGTGGCATGTTTGGAGCTGGAATTTATTTTGCTGAGAACTCTTCCAAAAGCAATCAATATGTGTATGGAATTGGAGGTGGCACCGGATGTCCAATTCACAAAGACAGATCGTGTTACATTTGTCACAG tatccaaatttgttttttctaaattgttcctgaccatcattgtcatacagGGTCTCCCTTTGTGACTGCCATTACTCACAAGGGCTTTGATGAAAGGCATGCATATGTGGCTGGCATCTTTGGGGCTGGAATTTACTTTGCTGAGAACTCCTCTAAGAGCAATCAATATGCATATGGAATTGGGGGAGGCACGGGATGTCCTATTCACAGAGACAGATCTTGCTATATCTGTCATAGgtgagtgactcaaggtaattgattatcaagtaatttgagcatcaaccagt Alignment from Exonerate_protein2genome GGTCTCCTTTTGTGAATGCGATTATCCATAAGGGCTTTGATGAAAGGCATGCATACATAGGTGGCATGTTTGGAGCTGGAATTTATTTTGCTGAGAACTCTTCCAAAAGCAATCAATATGTGTATGGAATTGGAGGTGGCACCGGATGTCCAATTCACAAAGACAGATCGTGTTACATTTGTCACAG tatccaaatttgttttttctaaattgttcctgaccatcattgtcatacagGGTCTCCCTTTGTGACTGCCATTACTCACAAGGGCTTTGATGAAAGGCATGCATATGTGGCTGGCATCTTTGGGGCTGGAATTTACTTTGCTGAGAACTCCTCTAAGAGCAATCAATATGCATATGGAATTGGGGGAGGCACGGGATGTCCTATTCACAGAGACAGATCTTGCTATATCTGTCATAGgtgagtgactcaaggtaattgattatcaagtaatttgagcatcaaccagt Alignment from Exonerate_coding2genome GGTCTCCTTTTGTGAATGCGATTATCCATAAGGGCTTTGATGAAAGGCATGCATACATAGGTGGCATGTTTGGAGCTGGAATTTATTTTGCTGAGAACTCTTCCAAAAGCAATCAATATGTGTATGGAATTGGAGGTGGCACCGGATGTCCAATTCACAAAGACAGATCGTGTTACATTTGTCACAG tatccaaatttgttttttctaaattgttcctgaccatcattgtcatacagGGTCTCCCTTTGTGACTGCCATTACTCACAAGGGCTTTGATGAAAGGCATGCATATGTGGCTGGCATCTTTGGGGCTGGAATTTACTTTGCTGAGAACTCCTCTAAGAGCAATCAATATGCATATGGAATTGGGGGAGGCACGGGATGTCCTATTCACAGAGACAGATCTTGCTATATCTGTCATAGgtgagtgactcaaggtaattgattatcaagtaatttgagcatcaaccagt Alignment from GeneWise GGTCTCCTTTTGTGAATGCGATTATCCATAAGGGCTTTGATGAAAGGCATGCATACATAGGTGGCATGTTTGGAGCTGGAATTTATTTTGCTGAGAACTCTTCCAAAAGCAATCAATATGTGTATGGAATTGGAGGTGGCACCGGATGTCCAATTCACAAAGACAGATCGTGTTACATTTGTCACAG tatccaaatttgttttttctaaattgttcctgaccatcattgtcatacagGGTCTCCCTTTGTGACTGCCATTACTCACAAGGGCTTTGATGAAAGGCATGCATATGTGGCTGGCATCTTTGGGGCTGGAATTTACTTTGCTGAGAACTCCTCTAAGAGCAATCAATATGCATATGGAATTGGGGGAGGCACGGGATGTCCTATTCACAGAGACAGATCTTGCTATATCTGTCATAGgtgagtgactcaaggtaattgattatcaagtaatttgagcatcaaccagt #### Trim8_ID9933_2 --> 0 - 0 Original Alignment AAGATGCTCATGAAGCAGCAGGAGCGGCTGGAGGAGAGAGAGCAGGACATTGAGGACCAGCTGTACAAGCTCGAGTCAGACAAGCGCCTGGTGGAG agtctcccccgatgcttgatgagacctgtttgtatatttacattttctagAAGATGCTCATGAAGCAGCAAGAGCGTTTAGAGGAAAGAGAGCAGGACATTGAGGACCAGTTGTACAAGCTTGAATCAGACAAGCGGCTTGTTGAGgtaattaggatatgtggaggaccaggattttaagtttatagccacttgct Alignment from CESAR AAGATGCTCATGAAGCAGCAGGAGCGGCTGGAGGAGAGAGAGCAGGACATTGAGGACCAGCTGTACAAGCTCGAGTCAGACAAGCGCCTGGTGGAG agtctcccccgatgcttgatgagacctgtttgtatatttacattttctagAAGATGCTCATGAAGCAGCAAGAGCGTTTAGAGGAAAGAGAGCAGGACATTGAGGACCAGTTGTACAAGCTTGAATCAGACAAGCGGCTTGTTGAGgtaattaggatatgtggaggaccaggattttaagtttatagccacttgct Alignment from Spaln_aa2Genome AAGATGCTCATGAAGCAGCAGGAGCGGCTGGAGGAGAGAGAGCAGGACATTGAGGACCAGCTGTACAAGCTCGAGTCAGACAAGCGCCTGGTGGAG agtctcccccgatgcttgatgagacctgtttgtatatttacattttctagAAGATGCTCATGAAGCAGCAAGAGCGTTTAGAGGAAAGAGAGCAGGACATTGAGGACCAGTTGTACAAGCTTGAATCAGACAAGCGGCTTGTTGAGgtaattaggatatgtggaggaccaggattttaagtttatagccacttgct Alignment from Spaln_nt2Genome AAGATGCTCATGAAGCAGCAGGAGCGGCTGGAGGAGAGAGAGCAGGACATTGAGGACCAGCTGTACAAGCTCGAGTCAGACAAGCGCCTGGTGGAG agtctcccccgatgcttgatgagacctgtttgtatatttacattttctagAAGATGCTCATGAAGCAGCAAGAGCGTTTAGAGGAAAGAGAGCAGGACATTGAGGACCAGTTGTACAAGCTTGAATCAGACAAGCGGCTTGTTGAGgtaattaggatatgtggaggaccaggattttaagtttatagccacttgct Alignment from Pairagon AAGATGCTCATGAAGCAGCAGGAGCGGCTGGAGGAGAGAGAGCAGGACATTGAGGACCAGCTGTACAAGCTCGAGTCAGACAAGCGCCTGGTGGAG agtctcccccgatgcttgatgagacctgtttgtatatttacattttctagAAGATGCTCATGAAGCAGCAAGAGCGTTTAGAGGAAAGAGAGCAGGACATTGAGGACCAGTTGTACAAGCTTGAATCAGACAAGCGGCTTGTTGAGgtaattaggatatgtggaggaccaggattttaagtttatagccacttgct Alignment from Exonerate_protein2genome AAGATGCTCATGAAGCAGCAGGAGCGGCTGGAGGAGAGAGAGCAGGACATTGAGGACCAGCTGTACAAGCTCGAGTCAGACAAGCGCCTGGTGGAG agtctcccccgatgcttgatgagacctgtttgtatatttacattttctagAAGATGCTCATGAAGCAGCAAGAGCGTTTAGAGGAAAGAGAGCAGGACATTGAGGACCAGTTGTACAAGCTTGAATCAGACAAGCGGCTTGTTGAGgtaattaggatatgtggaggaccaggattttaagtttatagccacttgct Alignment from Exonerate_coding2genome AAGATGCTCATGAAGCAGCAGGAGCGGCTGGAGGAGAGAGAGCAGGACATTGAGGACCAGCTGTACAAGCTCGAGTCAGACAAGCGCCTGGTGGAG agtctcccccgatgcttgatgagacctgtttgtatatttacattttctagAAGATGCTCATGAAGCAGCAAGAGCGTTTAGAGGAAAGAGAGCAGGACATTGAGGACCAGTTGTACAAGCTTGAATCAGACAAGCGGCTTGTTGAGgtaattaggatatgtggaggaccaggattttaagtttatagccacttgct Alignment from GeneWise AAGATGCTCATGAAGCAGCAGGAGCGGCTGGAGGAGAGAGAGCAGGACATTGAGGACCAGCTGTACAAGCTCGAGTCAGACAAGCGCCTGGTGGAG agtctcccccgatgcttgatgagacctgtttgtatatttacattttctagAAGATGCTCATGAAGCAGCAAGAGCGTTTAGAGGAAAGAGAGCAGGACATTGAGGACCAGTTGTACAAGCTTGAATCAGACAAGCGGCTTGTTGAGgtaattaggatatgtggaggaccaggattttaagtttatagccacttgct #### Trpm3_ID5035_2 --> 0 - 2 Original Alignment GCTCAGAAATCCTGGATTGAAAGAGCATTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATag gtgtcataagacatttaatccactgattctgattctttttgtgtctccagGCTCAGAAGTCCTGGATTGAAAGAGCGTTTTATAAAAGAGAATGTGTTCACATCATACCAAGCACAAAAGAACCCCATaggtgaggtaaacagaactttctggtacatgagggaatagttacacaaatcc Alignment from CESAR GCTCAGAAATCCTGGATTGAAAGAGCATTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATag gtgtcataagacatttaatccactgattctgattctttttgtgtctccagGCTCAGAAGTCCTGGATTGAAAGAGCGTTTTATAAAAGAGAATGTGTTCACATCATACCAAGCACAAAAGAACCCCATaggtgaggtaaacagaactttctggtacatgagggaatagttacacaaatcc Alignment from Spaln_aa2Genome GCTCAGAAATCCTGGATTGAAAGAGCATTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATAG gtgtcataagacatttaatccactgattctgattctttttgtgtctccagGCTCAGAAGTCCTGGATTGAAAGAGCGTTTTATAAAAGAGAATGTGTTCACATCATACCAAGCACAAAAGAACCCCATAGgtgaggtaaacagaactttctggtacatgagggaatagttacacaaatcc Alignment from Spaln_nt2Genome GCTCAGAAATCCTGGATTGAAAGAGCATTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATAGGTGTTG gtgtcataagacatttaatccactgattctgattctttttgtgtctccagGCTCAGAAGTCCTGGATTGAAAGAGCGTTTTATAAAAGAGAATGTGTTCACATCATACCAAGCACAAAAGAACCCCATAGGTG-AGgtaaacagaactttctggtacatgagggaatagttacacaaatc Alignment from Pairagon GCTCAGAAATCCTGGATTGAAAGAGCATTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATAG gtgtcataagacatttaatccactgattctgattctttttgtgtctccagGCTCAGAAGTCCTGGATTGAAAGAGCGTTTTATAAAAGAGAATGTGTTCACATCATACCAAGCACAAAAGAACCCCATAGgtgaggtaaacagaactttctggtacatgagggaatagttacacaaatcc Alignment from Exonerate_protein2genome GCTCAGAAATCCTGGATTGAAAGAGCATTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATAG gtgtcataagacatttaatccactgattctgattctttttgtgtctccagGCTCAGAAGTCCTGGATTGAAAGAGCGTTTTATAAAAGAGAATGTGTTCACATCATACCAAGCACAAAAGAACCCCATAGgtgaggtaaacagaactttctggtacatgagggaatagttacacaaatcc Alignment from Exonerate_coding2genome GCTCAGAAATCCTGGATTGAAAGAGCATTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATAG gtgtcataagacatttaatccactgattctgattctttttgtgtctccagGCTCAGAAGTCCTGGATTGAAAGAGCGTTTTATAAAAGAGAATGTGTTCACATCATACCAAGCACAAAAGAACCCCATAGgtgaggtaaacagaactttctggtacatgagggaatagttacacaaatcc Alignment from GeneWise GCTCAGAAATCCTGGATTGAAAGAGCATTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATAG gtgtcataagacatttaatccactgattctgattctttttgtgtctccagGCTCAGAAGTCCTGGATTGAAAGAGCGTTTTATAAAAGAGAATGTGTTCACATCATACCAAGCACAAAAGAACCCCATAGgtgaggtaaacagaactttctggtacatgagggaatagttacacaaatcc #### Trpm3_ID5039_5 --> 2 - 0 Original Alignment gtGTCATTCGTCAT---GTTGGAGATGCCTTGAAAGACCATGCATCTAAGTCTCGAGGGAAGATATGTACCATAGGTATCGCCCCCTGGGGAATTGTGGAAAACCAGGAAGACCTGATTGGAAGAGAT tatgaatgaccttacacttttttccagctgtccccatcctggtccctcaggtATAATCCACCATCATATTGGGGATGCCCTCAAAGACCACGCATCCAAGGCTCGAGGGAAGATATGTACCATTGGCATAGCCCCTTGGGGGATTGTGGAAAATCAGGAAGACCTAATTGGAAGAGATgtaggtcttggggggtgtcagactgtcagtgacatctctcactggcttct Alignment from CESAR gtGTCATT---CGTCATGTTGGAGATGCCTTGAAAGACCATGCATCTAAGTCTCGAGGGAAGATATGTACCATAGGTATCGCCCCCTGGGGAATTGTGGAAAACCAGGAAGACCTGATTGGAAGAGAT tatgaatgaccttacacttttttccagctgtccccatcctggtccctcaggtATAATCCACCATCATATTGGGGATGCCCTCAAAGACCACGCATCCAAGGCTCGAGGGAAGATATGTACCATTGGCATAGCCCCTTGGGGGATTGTGGAAAATCAGGAAGACCTAATTGGAAGAGATgtaggtcttggggggtgtcagactgtcagtgacatctctcactggcttct Alignment from Spaln_aa2Genome GTGTCATT---CGTCATGTTGGAGATGCCTTGAAAGACCATGCATCTAAGTCTCGAGGGAAGATATGTACCATAGGTATCGCCCCCTGGGGAATTGTGGAAAACCAGGAAGACCTGATTGGAAGAGAT tatgaatgaccttacacttttttccagctgtccccatcctggtccctcagGTATAATCCACCATCATATTGGGGATGCCCTCAAAGACCACGCATCCAAGGCTCGAGGGAAGATATGTACCATTGGCATAGCCCCTTGGGGGATTGTGGAAAATCAGGAAGACCTAATTGGAAGAGATgtaggtcttggggggtgtcagactgtcagtgacatctctcactggcttct Alignment from Spaln_nt2Genome GTGTCATTCG---TCATGTTGGAGATGCCTTGAAAGACCATGCATCTAAGTCTCGAGGGAAGATATGTACCATAGGTATCGCCCCCTGGGGAATTGTGGAAAACCAGGAAGACCTGATTGGAAGAGAT tatgaatgaccttacacttttttccagctgtccccatcctggtccctcagGTATAATCCACCATCATATTGGGGATGCCCTCAAAGACCACGCATCCAAGGCTCGAGGGAAGATATGTACCATTGGCATAGCCCCTTGGGGGATTGTGGAAAATCAGGAAGACCTAATTGGAAGAGATgtaggtcttggggggtgtcagactgtcagtgacatctctcactggcttct Alignment from Pairagon GTGTCAT---TCGTCATGTTGGAGATGCCTTGAAAGACCATGCATCTAAGTCTCGAGGGAAGATATGTACCATAGGTATCGCCCCCTGGGGAATTGTGGAAAACCAGGAAGACCTGATTGGAAGAGAT tatgaatgaccttacacttttttccagctgtccccatcctggtccctcagGTATAATCCACCATCATATTGGGGATGCCCTCAAAGACCACGCATCCAAGGCTCGAGGGAAGATATGTACCATTGGCATAGCCCCTTGGGGGATTGTGGAAAATCAGGAAGACCTAATTGGAAGAGATgtaggtcttggggggtgtcagactgtcagtgacatctctcactggcttct Alignment from Exonerate_protein2genome GTGTCATT---CGTCATGTTGGAGATGCCTTGAAAGACCATGCATCTAAGTCTCGAGGGAAGATATGTACCATAGGTATCGCCCCCTGGGGAATTGTGGAAAACCAGGAAGACCTGATTGGAAGAGAT tatgaatgaccttacacttttttccagctgtccccatcctggtccctcagGTATAATCCACCATCATATTGGGGATGCCCTCAAAGACCACGCATCCAAGGCTCGAGGGAAGATATGTACCATTGGCATAGCCCCTTGGGGGATTGTGGAAAATCAGGAAGACCTAATTGGAAGAGATgtaggtcttggggggtgtcagactgtcagtgacatctctcactggcttct Alignment from Exonerate_coding2genome GTGTCATT---CGTCATGTTGGAGATGCCTTGAAAGACCATGCATCTAAGTCTCGAGGGAAGATATGTACCATAGGTATCGCCCCCTGGGGAATTGTGGAAAACCAGGAAGACCTGATTGGAAGAGAT tatgaatgaccttacacttttttccagctgtccccatcctggtccctcagGTATAATCCACCATCATATTGGGGATGCCCTCAAAGACCACGCATCCAAGGCTCGAGGGAAGATATGTACCATTGGCATAGCCCCTTGGGGGATTGTGGAAAATCAGGAAGACCTAATTGGAAGAGATgtaggtcttggggggtgtcagactgtcagtgacatctctcactggcttct Alignment from GeneWise GTGTCATT---CGTCATGTTGGAGATGCCTTGAAAGACCATGCATCTAAGTCTCGAGGGAAGATATGTACCATAGGTATCGCCCCCTGGGGAATTGTGGAAAACCAGGAAGACCTGATTGGAAGAGAT tatgaatgaccttacacttttttccagctgtccccatcctggtccctcagGTATAATCCACCATCATATTGGGGATGCCCTCAAAGACCACGCATCCAAGGCTCGAGGGAAGATATGTACCATTGGCATAGCCCCTTGGGGGATTGTGGAAAATCAGGAAGACCTAATTGGAAGAGATgtaggtcttggggggtgtcagactgtcagtgacatctctcactggcttct #### Trpm3_ID5060_16 --> 1 - 0 Original Alignment gGACTTTGGCCAGCTGGCTGTGGAGCTCCTGGACCAGTCCTACAAACAGGATGAGCAGCTGGCCATGAAGCTGCTGACGTATGAGCTGAAGAACTGGAGTAATGCCACATGCCTGCAGCTGGCTGTGGCTGCCAAGCACCGTGACTTCATTGCACACACGTGCAGCCAGATGTTACTTACTGACATGTGGATGGGACGGCTCCGGATGAGAAAGAACTCAGGCCTCAAG ttgtggagcctgtatgaagccctccgttttctgtctctcacatggagcaggGACTTTGGCCGACTGGCTGTAGATCTTCTGGATCAATCCTACAAACAGGACGAGCAGCTAGCCACAAAATTGCTATCATATGACCTATCAAATTGGAGTAACGCAACATGCCTCCAATTGTCAGTTGGT---------GGGTACTTCATTGCTCACATGTGTAGCCAT---ATACTTACTGACATGTGGATGGGACGACTTCAGATGAGAAAAACCTCAGGCCTTAAGgtgagtatacacctgcatgttgccattaagcccaaaaattagttgtaggc Alignment from CESAR gGACTTTGGCCAGCTGGCTGTGGAGCTCCTGGACCAGTCCTACAAACAGGATGAGCAGCTGGCCATGAAGCTGCTGACGTATGAGCTGAAGAACTGGAGTAATGCCACATGCCTGCAGCTGGCTGTGGCTGCCAAGCACCGTGACTTCATTGCACACACGTGCAGCCAGATGTTACTTACTGACATGTGGATGGGACGGCTCCGGATGAGAAAGAACTCAGGCCTCAAG ttgtggagcctgtatgaagccctccgttttctgtctctcacatggagcaggGACTTTGGCCGACTGGCTGTAGATCTTCTGGATCAATCCTACAAACAGGACGAGCAGCTAGCCACAAAATTGCTATCATATGACCTATCAAATTGGAGTAACGCAACATGCCTCCAATTGTCAGTTGGTGGG---------TACTTCATTGCTCACATGTGTAGCCATATA---CTTACTGACATGTGGATGGGACGACTTCAGATGAGAAAAACCTCAGGCCTTAAGgtgagtatacacctgcatgttgccattaagcccaaaaattagttgtaggc Alignment from Spaln_aa2Genome GGACTTTGGCCAGCTGGCTGTGGAGCTCCTGGACCAGTCCTACAAACAGGATGAGCAGCTGGCCATGAAGCTGCTGACGTATGAGCTGAAGAACTGGAGTAATGCCACATGCCTGCAGCTGGCTGTGGCTGCCAAGCACCGTGACTTCATTGCACACACGTGCAGCCAGATGTTACTTACTGACATGTGGATGGGACGGCTCCGGATGAGAAAGAACTCAGGCCTCAAG ttgtggagcctgtatgaagccctccgttttctgtctctcacatggagcagGGACTTTGGCCGACTGGCTGTAGATCTTCTGGATCAATCCTACAAACAGGACGAGCAGCTAGCCACAAAATTGCTATCATATGACCTATCAAATTGGAGTAACGCAACATGCCTCCAATTGTCAGTTGGTGGG---------TACTTCATTGCTCACATGTGTAGCCATATA---CTTACTGACATGTGGATGGGACGACTTCAGATGAGAAAAACCTCAGGCCTTAAGgtgagtatacacctgcatgttgccattaagcccaaaaattagttgtaggc Alignment from Spaln_nt2Genome GGACTTTGGCCAGCTGGCTGTGGAGCTCCTGGACCAGTCCTACAAACAGGATGAGCAGCTGGCCATGAAGCTGCTGACGTATGAGCTGAAGAACTGGAGTAATGCCACATGCCTGCAGCTGGCTGTGGCTGCCAAGCACCGTGACTTCATTGCACACACGTGCAGCCAGATGTTACTTACTGACATGTGGATGGGACGGCTCCGGATGAGAAAGAACTCAGGCCTCAAG ttgtggagcctgtatgaagccctccgttttctgtctctcacatggagcagGGACTTTGGCCGACTGGCTGTAGATCTTCTGGATCAATCCTACAAACAGGACGAGCAGCTAGCCACAAAATTGCTATCATATGACCTATCAAATTGGAGTAACGCAACATGCCTCCAATTGTCAGTTGGTG---------GGTACTTCATTGCTCACATGTGTAGCCATA---TACTTACTGACATGTGGATGGGACGACTTCAGATGAGAAAAACCTCAGGCCTTAAGgtgagtatacacctgcatgttgccattaagcccaaaaattagttgtaggc Alignment from Pairagon GGACTTTGGCCAGCTGGCTGTGGAGCTCCTGGACCAGTCCTACAAACAGGATGAGCAGCTGGCCATGAAGCTGCTGACGTATGAGCTGAAGAACTGGAGTAATGCCACATGCCTGCA----------GCTGGCTGTGGCTGCCAAGCACCGTGACTTCATTGCACACACGTGCAGCCAGATGTTACTTACTGACATGTGGATGGGACGGCTCCGGATGAGAAAGAACTCAGGCCTCAAG ttgtggagcctgtatgaagccctccgttttctgtctctcacatggagcagGGACTTTGGCCGACTGGCTGTAGATCTTCTGGATCAATCCTACAAACAGGACGAGCAGCTAGCCACAAAATTGCTATCATATGACCTATCAAATTGGAGTAACGCAACATGCCTCCAATTGTCAGTTGGTGGGT-------------------ACTTCATTGCTCACATGTGTAGCCATA---TACTTACTGACATGTGGATGGGACGACTTCAGATGAGAAAAACCTCAGGCCTTAAGgtgagtatacacctgcatgttgccattaagcccaaaaattagttgtaggc Alignment from Exonerate_protein2genome GGACTTTGGCCAGCTGGCTGTGGAGCTCCTGGACCAGTCCTACAAACAGGATGAGCAGCTGGCCATGAAGCTGCTGACGTATGAGCTGAAGAACTGGAGTAATGCCACATGCCTGCAGCTGGCTGTGGCTGCCAAGCACCGTGACTTCATTGCACACACGTGCAGCCAGATGTTACTTACTGACATGTGGATGGGACGGCTCCGGATGAGAAAGAACTCAGGCCTCAAG ttgtggagcctgtatgaagccctccgttttctgtctctcacatggagcagGGACTTTGGCCGACTGGCTGTAGATCTTCTGGATCAATCCTACAAACAGGACGAGCAGCTAGCCACAAAATTGCTATCATATGACCTATCAAATTGGAGTAACGCAACATGCCTCCAATTGTCAGTTGGTGGGTAC---------TTCATTGCTCACATGTGTAGCCAT---ATACTTACTGACATGTGGATGGGACGACTTCAGATGAGAAAAACCTCAGGCCTTAAGgtgagtatacacctgcatgttgccattaagcccaaaaattagttgtaggc Alignment from Exonerate_coding2genome GGACTTTGGCCAGCTGGCTGTGGAGCTCCTGGACCAGTCCTACAAACAGGATGAGCAGCTGGCCATGAAGCTGCTGACGTATGAGCTGAAGAACTGGAGTAATGCCACATGCCTGCAGCTGGCTGTGGCTGCCAAGCACCGTGACTTCATTGCACACACGTGCAGCCAGATGTTACTTACTGACATGTGGATGGGACGGCTCCGGATGAGAAAGAACTCAGGCCTCAAG ttgtggagcctgtatgaagccctccgttttctgtctctcacatggagcagGGACTTTGGCCGACTGGCTGTAGATCTTCTGGATCAATCCTACAAACAGGACGAGCAGCTAGCCACAAAATTGCTATCATATGACCTATCAAATTGGAGTAACGCAACATGCCTCCAATTGTCAGTTGGTGGGTAC---------TTCATTGCTCACATGTGTAGCCAT---ATACTTACTGACATGTGGATGGGACGACTTCAGATGAGAAAAACCTCAGGCCTTAAGgtgagtatacacctgcatgttgccattaagcccaaaaattagttgtaggc Alignment from GeneWise -AGGGACTTTGGCCAGCTGGCTGTGGAGCTCCTGGACCAGTCCTACAAACAGGATGAGCAGCTGGCCATGAAGCTGCTGACGTATGAGCTGAAGAACTGGAGTAATGCCACATGCCTGCAGCTGGCTGTGGCTGCCAAGCACCGTGACTTCATTGCACACACGTGCAGCCAGATGTTACTTACTGACATGTGGATGGGACGGCTCCGGATGAGAAAGAACTCAGGCCTCAAG ttgtggagcctgtatgaagccctccgttttctgtctctcacatggagCAGGGACTTTGGCCGACTGGCTGTAGATCTTCTGGATCAATCCTACAAACAGGACGAGCAGCTAGCCACAAAATTGCTATCATATGACCTATCAAATTGGAGTAACGCAACATGCCTCCAATTGTCAGTTGGTGGGTAC---------TTCATTGCTCACATGTGTAGCCAT---ATACTTACTGACATGTGGATGGGACGACTTCAGATGAGAAAAACCTCAGGCCTTAAGgtgagtatacacctgcatgttgccattaagcccaaaaattagttgtaggc #### Trpm6_ID4467_5 --> 0 - 1 Original Alignment TACATTAGAACTTCTTGGGATACAAAATCGGATCATCTGTTGCACTTAATGCTGAAAGAGTGGAATATGGAACTGCCAAAGCTTGTGATCTCCGTCCATGGGGGTCTTCAGAACTTCAAGATATCCTCCAAGCTCAAAGAGACCTTCAGCCAGGGTCTGGTCAAAGCTGCAGAGACCACAGGAGCATGGATAATTACAGAAGGCATAAACTCAg tccctactccatgcatatagatgtcctctcttacctcttcccacccatagTACATAAGAACTTCTTGGGATGCAATGTCAGGTCGCCTACTGCACTTAATGCTCAAAGAGTTGAATATGGAGTTACCAAAACTTGTAATTCCTGTGCAGGGGGGGCTTCAGAACTTTAATATATCTGCTAAGTTCAAGCAATCATTTAGACAGGGCCTC---AAAGTTACTGAGACTACAGCAGCATTGATACTTACAGAGAGCATAAACTCAggtgagttgaaggtgggttctcaaagctaattcatcacacaaggtatagag Alignment from CESAR TACATTAGAACTTCTTGGGATACAAAATCGGATCATCTGTTGCACTTAATGCTGAAAGAGTGGAATATGGAACTGCCAAAGCTTGTGATCTCCGTCCATGGGGGTCTTCAGAACTTCAAGATATCCTCCAAGCTCAAAGAGACCTTCAGCCAGGGTCTGGTCAAAGCTGCAGAGACCACAGGAGCATGGATAATTACAGAAGGCATAAACTCAg tccctactccatgcatatagatgtcctctcttacctcttcccacccatagTACATAAGAACTTCTTGGGATGCAATGTCAGGTCGCCTACTGCACTTAATGCTCAAAGAGTTGAATATGGAGTTACCAAAACTTGTAATTCCTGTGCAGGGGGGGCTTCAGAACTTTAATATATCTGCTAAGTTCAAGCAATCATTTAGACAGGGCCTC---AAAGTTACTGAGACTACAGCAGCATTGATACTTACAGAGAGCATAAACTCAggtgagttgaaggtgggttctcaaagctaattcatcacacaaggtatagag Alignment from Spaln_aa2Genome TACATTAGAACTTCTTGGGATACAAAATCGGATCATCTGTTGCACTTAATGCTGAAAGAGTGGAATATGGAACTGCCAAAGCTTGTGATCTCCGTCCATGGGGGTCTTCAGAACTTCAAGATATCCTCCAAGCTCAAAGAGACCTTCAGCCAGGGTCTGGTCAAAGCTGCAGAGACCACAGGAGCATGGATAATTACAGAAGGCATAAACTCAGGAGTGTCCAAG tccctactccatgcatatagatgtcctctcttacctcttcccacccatagTACATAAGAACTTCTTGGGATGCAATGTCAGGTCGCCTACTGCACTTAATGCTCAAAGAGTTGAATATGGAGTTACCAAAACTTGTAATTCCTGTGCAGGGGGGGCTTCAGAACTTTAATATATCTGCTAAGTTCAAGCAATCATTTAGACAGGGCCTC---AAAGTTACTGAGACTACAGCAGCATTGATACTTACAGAGAGCATAAACTCAGGTGAGTTGAAGgtgggttctcaaagctaattcatcacacaaggtatagag Alignment from Spaln_nt2Genome TACATTAGAACTTCTTGGGATACAAAATCGGATCATCTGTTGCACTTAATGCTGAAAGAGTGGAATATGGAACTGCCAAAGCTTGTGATCTCCGTCCATGGGGGTCTTCAGAACTTCAAGATATCCTCCAAGCTCAAAGAGACCTTCAGCCAGGGTCTGGTCAAAGCTGCAGAGACCACAGGAGCATGGATAATTACAGAAGGCATAAACTCAG tccctactccatgcatatagatgtcctctcttacctcttcccacccatagTACATAAGAACTTCTTGGGATGCAATGTCAGGTCGCCTACTGCACTTAATGCTCAAAGAGTTGAATATGGAGTTACCAAAACTTGTAATTCCTGTGCAGGGGGGGCTTCAGAACTTTAATATATCTGCTAAGTTCAAGCAATCATTTAGACAGGGCC---TCAAAGTTACTGAGACTACAGCAGCATTGATACTTACAGAGAGCATAAACTCAGgtgagttgaaggtgggttctcaaagctaattcatcacacaaggtatagag Alignment from Pairagon TACATTAGAACTTCTTGGGATACAAAATCGGATCATCTGTTGCACTTAATGCTGAAAGAGTGGAATATGGAACTGCCAAAGCTTGTGATCTCCGTCCATGGGGGTCTTCAGAACTTCAAGATATCCTCCAAGCTCAAAGAGACCTTCAGCCAGGGTCTGGTCAAAGCTGCAGAGACCACAGGAGCATGGATAATTACAGAAGGCATAAACTCAG tccctactccatgcatatagatgtcctctcttacctcttcccacccatagTACATAAGAACTTCTTGGGATGCAATGTCAGGTCGCCTACTGCACTTAATGCTCAAAGAGTTGAATATGGAGTTACCAAAACTTGTAATTCCTGTGCAGGGGGGGCTTCAGAACTTTAATATATCTGCTAAGTTCAAGCAATCATTTAGACAGGGCC---TCAAAGTTACTGAGACTACAGCAGCATTGATACTTACAGAGAGCATAAACTCAGgtgagttgaaggtgggttctcaaagctaattcatcacacaaggtatagag Alignment from Exonerate_protein2genome TACATTAGAACTTCTTGGGATACAAAATCGGATCATCTGTTGCACTTAATGCTGAAAGAGTGGAATATGGAACTGCCAAAGCTTGTGATCTCCGTCCATGGGGGTCTTCAGAACTTCAAGATATCCTCCAAGCTCAAAGAGACCTTCAGCCAGGGTCTGGTCAAAGCTGCAGAGACCACAGGAGCATGGATAATTACAGAAGGCATAAACTCAG tccctactccatgcatatagatgtcctctcttacctcttcccacccatagTACATAAGAACTTCTTGGGATGCAATGTCAGGTCGCCTACTGCACTTAATGCTCAAAGAGTTGAATATGGAGTTACCAAAACTTGTAATTCCTGTGCAGGGGGGGCTTCAGAACTTTAATATATCTGCTAAGTTCAAGCAATCATTTAGACAGGGCCTC---AAAGTTACTGAGACTACAGCAGCATTGATACTTACAGAGAGCATAAACTCAGgtgagttgaaggtgggttctcaaagctaattcatcacacaaggtatagag Alignment from Exonerate_coding2genome TACATTAGAACTTCTTGGGATACAAAATCGGATCATCTGTTGCACTTAATGCTGAAAGAGTGGAATATGGAACTGCCAAAGCTTGTGATCTCCGTCCATGGGGGTCTTCAGAACTTCAAGATATCCTCCAAGCTCAAAGAGACCTTCAGCCAGGGTCTGGTCAAAGCTGCAGAGACCACAGGAGCATGGATAATTACAGAAGGCATAAACTCAG tccctactccatgcatatagatgtcctctcttacctcttcccacccatagTACATAAGAACTTCTTGGGATGCAATGTCAGGTCGCCTACTGCACTTAATGCTCAAAGAGTTGAATATGGAGTTACCAAAACTTGTAATTCCTGTGCAGGGGGGGCTTCAGAACTTTAATATATCTGCTAAGTTCAAGCAATCATTTAGACAGGGCCTC---AAAGTTACTGAGACTACAGCAGCATTGATACTTACAGAGAGCATAAACTCAGgtgagttgaaggtgggttctcaaagctaattcatcacacaaggtatagag Alignment from GeneWise TACATTAGAACTTCTTGGGATACAAAATCGGATCATCTGTTGCACTTAATGCTGAAAGAGTGGAATATGGAACTGCCAAAGCTTGTGATCTCCGTCCATGGGGGTCTTCAGAACTTCAAGATATCCTCCAAGCTCAAAGAGACCTTCAGCCAGGGTCTGGTCAAAGCTGCAGAGACCACAGGAGCATGGATAATTACAGAAGGCATAAACTCA- tccctactccatgcatatagatgtcctctcttacctcttcccacccatagTACATAAGAACTTCTTGGGATGCAATGTCAGGTCGCCTACTGCACTTAATGCTCAAAGAGTTGAATATGGAGTTACCAAAACTTGTAATTCCTGTGCAGGGGGGGCTTCAGAACTTTAATATATCTGCTAAGTTCAAGCAATCATTTAGACAGGGCCTC---AAAGTTACTGAGACTACAGCAGCATTGATACTTACAGAGAGCATAAACTCAGgtgagttgaaggtgggttctcaaagctaattcatcacacaaggtatagag #### Trpm6_ID4468_6 --> 2 - 0 Original Alignment gaGTGTCC---------AAGCACGTTGGGGATGCCCTAAAAGCCCATTCCTCTAAGTCTTTGAGGAAAATCTGGACAGTTGGAATCCCTCCTTGGGGAGTCATTGAGAACCAGAGAGAGCTGGTCGGAAAAGAT gtctttaaaatcacttgaaatataatagtgatttttttcttttcccttaggaGTCTCTGGAGTCTCCAAGCATGTTGGAGATACATTGGAAGCCCATGCCTCTAAGTCGCTAAGGAAAACATGGACTGTCGGTATTCCCCCTTGGGGAGTCATTGAGAATCAGTGTGTGTTGGTTGGAGAGGATgtaagtagcctttcacactacttttcaacacatacttgtagttgataaag Alignment from CESAR gaGTG---------TCCAAGCACGTTGGGGATGCCCTAAAAGCCCATTCCTCTAAGTCTTTGAGGAAAATCTGGACAGTTGGAATCCCTCCTTGGGGAGTCATTGAGAACCAGAGAGAGCTGGTCGGAAAAGAT gtctttaaaatcacttgaaatataatagtgatttttttcttttcccttaggaGTCTCTGGAGTCTCCAAGCATGTTGGAGATACATTGGAAGCCCATGCCTCTAAGTCGCTAAGGAAAACATGGACTGTCGGTATTCCCCCTTGGGGAGTCATTGAGAATCAGTGTGTGTTGGTTGGAGAGGATgtaagtagcctttcacactacttttcaacacatacttgtagttgataaag Alignment from Spaln_aa2Genome CACGTTGGGGATGCCCTAAAAGCCCATTCCTCTAAGTCTTTGAGGAAAATCTGGACAGTTGGAATCCCTCCTTGGGGAGTCATTGAGAACCAGAGAGAGCTGGTCGGAAAAGAT gtctttaaaatcacttgaaatataatagtgatttttttcttttcccttaggagtctctggagtctccaagCATGTTGGAGATACATTGGAAGCCCATGCCTCTAAGTCGCTAAGGAAAACATGGACTGTCGGTATTCCCCCTTGGGGAGTCATTGAGAATCAGTGTGTGTTGGTTGGAGAGGATgtaagtagcctttcacactacttttcaacacatacttgtagttgataaag Alignment from Spaln_nt2Genome GAGTGTC---------CAAGCACGTTGGGGATGCCCTAAAAGCCCATTCCTCTAAGTCTTTGAGGAAAATCTGGACAGTTGGAATCCCTCCTTGGGGAGTCATTGAGAACCAGAGAGAGCTGGTCGGAAAAGAT gtctttaaaatcacttgaaatataatagtgatttttttcttttcccttagGAGTCTCTGGAGTCTCCAAGCATGTTGGAGATACATTGGAAGCCCATGCCTCTAAGTCGCTAAGGAAAACATGGACTGTCGGTATTCCCCCTTGGGGAGTCATTGAGAATCAGTGTGTGTTGGTTGGAGAGGATgtaagtagcctttcacactacttttcaacacatacttgtagttgataaag Alignment from Pairagon ---------GAGTGTCCAAGCACGTTGGGGATGCCCTAAAAGCCCATTCCTCTAAGTCTTTGAGGAAAATCTGGACAGTTGGAATCCCTCCTTGGGGAGTCATTGAGAACCAGAGAGAGCTGGTCGGAAAAGAT gtctttaaaatcacttgaaatataatagtgatttttttcttttcccttagGAGTCTCTGGAGTCTCCAAGCATGTTGGAGATACATTGGAAGCCCATGCCTCTAAGTCGCTAAGGAAAACATGGACTGTCGGTATTCCCCCTTGGGGAGTCATTGAGAATCAGTGTGTGTTGGTTGGAGAGGATgtaagtagcctttcacactacttttcaacacatacttgtagttgataaag Alignment from Exonerate_protein2genome GAGTGTCCAAGCACGTTGGGGATGCCCTAAAAGCCCATTCCTCTAAGTCTTTGAGGAAAATCTGGACAGTTGGAATCCCTCCTTGGGGAGTCATTGAGAACCAGAGAGAGCTGGTCGGAAAAGAT gtctttaaaatcacttgaaatataatagtgatttttttcttttcccttaggagtctctgGAGTCTCCAAGCATGTTGGAGATACATTGGAAGCCCATGCCTCTAAGTCGCTAAGGAAAACATGGACTGTCGGTATTCCCCCTTGGGGAGTCATTGAGAATCAGTGTGTGTTGGTTGGAGAGGATgtaagtagcctttcacactacttttcaacacatacttgtagttgataaag Alignment from Exonerate_coding2genome GAGTGTCCAAGCACGTTGGGGATGCCCTAAAAGCCCATTCCTCTAAGTCTTTGAGGAAAATCTGGACAGTTGGAATCCCTCCTTGGGGAGTCATTGAGAACCAGAGAGAGCTGGTCGGAAAAGAT gtctttaaaatcacttgaaatataatagtgatttttttcttttcccttaggagtctctgGAGTCTCCAAGCATGTTGGAGATACATTGGAAGCCCATGCCTCTAAGTCGCTAAGGAAAACATGGACTGTCGGTATTCCCCCTTGGGGAGTCATTGAGAATCAGTGTGTGTTGGTTGGAGAGGATgtaagtagcctttcacactacttttcaacacatacttgtagttgataaag Alignment from GeneWise -----GGAGTGTCCAAGCACGTTGGGGATGCCCTAAAAGCCCATTCCTCTAAGTCTTTGAGGAAAATCTGGACAGTTGGAATCCCTCCTTGGGGAGTCATTGAGAACCAGAGAGAGCTGGTCGGAAAAGAT gtctttaaaatcacttgaaatataatagtgatttttttcttttcccttaggagTCTCTGGAGTCTCCAAGCATGTTGGAGATACATTGGAAGCCCATGCCTCTAAGTCGCTAAGGAAAACATGGACTGTCGGTATTCCCCCTTGGGGAGTCATTGAGAATCAGTGTGTGTTGGTTGGAGAGGATgtaagtagcctttcacactacttttcaacacatacttgtagttgataaag #### Trpm6_ID4469_7 --> 0 - 1 Original Alignment GTGGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTCACCACGCTAAACTGTATGCACTCTCACTTCATCCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGAAGCATCTCTCAATGCAGAAGATACACACTt tgaagaatgcattatctctgccctccactaaatattttcgttttctctagGTAGTATGCATGTACCAAACATTGGGCAACCCACTCAGCAAGCTGACTACACTAAACTGTATGCACTCTCACTTTGTTTTGTGTGATGATGGCACTGTGGATACATATGGAAATGAAGAAAAGCTGAGGCGGAACCTGGAGGAACATCTCTCAATGCAAAAGCTACACACTtgtgagtggagcctccttctggcaaaccaccaataaaacttaattttctga Alignment from CESAR GTGGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTCACCACGCTAAACTGTATGCACTCTCACTTCATCCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGAAGCATCTCTCAATGCAGAAGATACACACTt tgaagaatgcattatctctgccctccactaaatattttcgttttctctagGTAGTATGCATGTACCAAACATTGGGCAACCCACTCAGCAAGCTGACTACACTAAACTGTATGCACTCTCACTTTGTTTTGTGTGATGATGGCACTGTGGATACATATGGAAATGAAGAAAAGCTGAGGCGGAACCTGGAGGAACATCTCTCAATGCAAAAGCTACACACTtgtgagtggagcctccttctggcaaaccaccaataaaacttaattttctga Alignment from Spaln_aa2Genome GTGGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTCACCACGCTAAACTGTATGCACTCTCACTTCATCCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGAAGCATCTCTCAATGCAGAAGATACACACTT tgaagaatgcattatctctgccctccactaaatattttcgttttctctagGTAGTATGCATGTACCAAACATTGGGCAACCCACTCAGCAAGCTGACTACACTAAACTGTATGCACTCTCACTTTGTTTTGTGTGATGATGGCACTGTGGATACATATGGAAATGAAGAAAAGCTGAGGCGGAACCTGGAGGAACATCTCTCAATGCAAAAGCTACACACTTgtgagtggagcctccttctggcaaaccaccaataaaacttaattttctga Alignment from Spaln_nt2Genome GTGGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTCACCACGCTAAACTGTATGCACTCTCACTTCATCCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGAAGCATCTCTCAATGCAGAAGATACACACTT tgaagaatgcattatctctgccctccactaaatattttcgttttctctagGTAGTATGCATGTACCAAACATTGGGCAACCCACTCAGCAAGCTGACTACACTAAACTGTATGCACTCTCACTTTGTTTTGTGTGATGATGGCACTGTGGATACATATGGAAATGAAGAAAAGCTGAGGCGGAACCTGGAGGAACATCTCTCAATGCAAAAGCTACACACTTgtgagtggagcctccttctggcaaaccaccaataaaacttaattttctga Alignment from Pairagon GTGGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTCACCACGCTAAACTGTATGCACTCTCACTTCATCCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGAAGCATCTCTCAATGCAGAAGATACACACTT tgaagaatgcattatctctgccctccactaaatattttcgttttctctagGTAGTATGCATGTACCAAACATTGGGCAACCCACTCAGCAAGCTGACTACACTAAACTGTATGCACTCTCACTTTGTTTTGTGTGATGATGGCACTGTGGATACATATGGAAATGAAGAAAAGCTGAGGCGGAACCTGGAGGAACATCTCTCAATGCAAAAGCTACACACTTgtgagtggagcctccttctggcaaaccaccaataaaacttaattttctga Alignment from Exonerate_protein2genome GTGGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTCACCACGCTAAACTGTATGCACTCTCACTTCATCCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGAAGCATCTCTCAATGCAGAAGATACACACTT tgaagaatgcattatctctgccctccactaaatattttcgttttctctagGTAGTATGCATGTACCAAACATTGGGCAACCCACTCAGCAAGCTGACTACACTAAACTGTATGCACTCTCACTTTGTTTTGTGTGATGATGGCACTGTGGATACATATGGAAATGAAGAAAAGCTGAGGCGGAACCTGGAGGAACATCTCTCAATGCAAAAGCTACACACTTgtgagtggagcctccttctggcaaaccaccaataaaacttaattttctga Alignment from Exonerate_coding2genome GTGGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTCACCACGCTAAACTGTATGCACTCTCACTTCATCCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGAAGCATCTCTCAATGCAGAAGATACACACTT tgaagaatgcattatctctgccctccactaaatattttcgttttctctagGTAGTATGCATGTACCAAACATTGGGCAACCCACTCAGCAAGCTGACTACACTAAACTGTATGCACTCTCACTTTGTTTTGTGTGATGATGGCACTGTGGATACATATGGAAATGAAGAAAAGCTGAGGCGGAACCTGGAGGAACATCTCTCAATGCAAAAGCTACACACTTgtgagtggagcctccttctggcaaaccaccaataaaacttaattttctga Alignment from GeneWise GTGGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTCACCACGCTAAACTGTATGCACTCTCACTTCATCCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGAAGCATCTCTCAATGCAGAAGATACACACTT tgaagaatgcattatctctgccctccactaaatattttcgttttctctagGTAGTATGCATGTACCAAACATTGGGCAACCCACTCAGCAAGCTGACTACACTAAACTGTATGCACTCTCACTTTGTTTTGTGTGATGATGGCACTGTGGATACATATGGAAATGAAGAAAAGCTGAGGCGGAACCTGGAGGAACATCTCTCAATGCAAAAGCTACACACTTgtgagtggagcctccttctggcaaaccaccaataaaacttaattttctga #### Trpm6_ID4475_13 --> 0 - 0 Original Alignment AAACAAGGACCAACTAATAAATTTTTGCGTCATCTTGTCCAAGACGTAAAGCAG ctcttccatatgagtaacagctctccagacctggtatgctttttcttcagAAATGGGGGCTAACAAATAAATTTTTGCGTCATCTTGTGCAGGATATTAGGCAGgtgagttggatgatattttaaatcaaaaaaaactctacaagctagagttc Alignment from CESAR AAACAAGGACCAACTAATAAATTTTTGCGTCATCTTGTCCAAGACGTAAAGCAG ctcttccatatgagtaacagctctccagacctggtatgctttttcttcagAAATGGGGGCTAACAAATAAATTTTTGCGTCATCTTGTGCAGGATATTAGGCAGgtgagttggatgatattttaaatcaaaaaaaactctacaagctagagttc Alignment from Spaln_aa2Genome AAACAAGGACCAACTAATAAATTTTTGCGTCATCTTGTCCAAGACGTAAAGCAG ctcttccatatgagtaacagctctccagacctggtatgctttttcttcagAAATGGGGGCTAACAAATAAATTTTTGCGTCATCTTGTGCAGGATATTAGGCAGgtgagttggatgatattttaaatcaaaaaaaactctacaagctagagttc Alignment from Spaln_nt2Genome AAACAAGGACCAACTAATAAATTTTTGCGTCATCTTGTCCAAGACGTAAAGCAG ctcttccatatgagtaacagctctccagacctggtatgctttttcttcagAAATGGGGGCTAACAAATAAATTTTTGCGTCATCTTGTGCAGGATATTAGGCAGgtgagttggatgatattttaaatcaaaaaaaactctacaagctagagttc Alignment from Pairagon AAACAAGGACCAACTAATAAATTTTTGCGTCATCTTGTCCAAGACGTAAAGCAG ctcttccatatgagtaacagctctccagacctggtatgctttttcttcagAAATGGGGGCTAACAAATAAATTTTTGCGTCATCTTGTGCAGGATATTAGGCAGgtgagttggatgatattttaaatcaaaaaaaactctacaagctagagttc Alignment from Exonerate_protein2genome AAACAAGGACCAACTAATAAATTTTTGCGTCATCTTGTCCAAGACGTAAAGCAG ctcttccatatgagtaacagctctccagacctggtatgctttttcttcagAAATGGGGGCTAACAAATAAATTTTTGCGTCATCTTGTGCAGGATATTAGGCAGgtgagttggatgatattttaaatcaaaaaaaactctacaagctagagttc Alignment from Exonerate_coding2genome AAACAAGGACCAACTAATAAATTTTTGCGTCATCTTGTCCAAGACGTAAAGCAG ctcttccatatgagtaacagctctccagacctggtatgctttttcttcagAAATGGGGGCTAACAAATAAATTTTTGCGTCATCTTGTGCAGGATATTAGGCAGgtgagttggatgatattttaaatcaaaaaaaactctacaagctagagttc Alignment from GeneWise AAACAAGGACCAACTAATAAATTTTTGCGTCATCTTGTCCAAGACGTAAAGCAG ctcttccatatgagtaacagctctccagacctggtatgctttttcttcagAAATGGGGGCTAACAAATAAATTTTTGCGTCATCTTGTGCAGGATATTAGGCAGgtgagttggatgatattttaaatcaaaaaaaactctacaagctagagttc #### Trpm6_ID4483_20 --> 0 - 0 Original Alignment ATGGCTTATTTGGCATTCCTCATGCTGTTCACTTACACAGTGTTGGTGGAGATGCAGCCCCAACCCAGCGTGCACGAATGGCTTGTCATCATCTACATCTTCACCAATGCTATTGAGAAGGTCAGGGAG agtgttgattacgcggggactccaggtccccatcctttgcttctctccagATGGCCTATTTGGCCTTCTTGATGTTGTTCACCTATACAGTTTTAGTTGAAATGCAGCCTCAACCCAGTGTACATGAGTGGCTTGTAATTATATATATCTTTATTAAGGCCATTGAGAAGGTCAGAGAGgtaagtaacatttgggaaccattgatgtaagaaggtttgctgctgctgag Alignment from CESAR ATGGCTTATTTGGCATTCCTCATGCTGTTCACTTACACAGTGTTGGTGGAGATGCAGCCCCAACCCAGCGTGCACGAATGGCTTGTCATCATCTACATCTTCACCAATGCTATTGAGAAGGTCAGGGAG agtgttgattacgcggggactccaggtccccatcctttgcttctctccagATGGCCTATTTGGCCTTCTTGATGTTGTTCACCTATACAGTTTTAGTTGAAATGCAGCCTCAACCCAGTGTACATGAGTGGCTTGTAATTATATATATCTTTATTAAGGCCATTGAGAAGGTCAGAGAGgtaagtaacatttgggaaccattgatgtaagaaggtttgctgctgctgag Alignment from Spaln_aa2Genome ATGGCTTATTTGGCATTCCTCATGCTGTTCACTTACACAGTGTTGGTGGAGATGCAGCCCCAACCCAGCGTGCACGAATGGCTTGTCATCATCTACATCTTCACCAATGCTATTGAGAAGGTCAGGGAG agtgttgattacgcggggactccaggtccccatcctttgcttctctccagATGGCCTATTTGGCCTTCTTGATGTTGTTCACCTATACAGTTTTAGTTGAAATGCAGCCTCAACCCAGTGTACATGAGTGGCTTGTAATTATATATATCTTTATTAAGGCCATTGAGAAGGTCAGAGAGgtaagtaacatttgggaaccattgatgtaagaaggtttgctgctgctgag Alignment from Spaln_nt2Genome ATGGCTTATTTGGCATTCCTCATGCTGTTCACTTACACAGTGTTGGTGGAGATGCAGCCCCAACCCAGCGTGCACGAATGGCTTGTCATCATCTACATCTTCACCAATGCTATTGAGAAGGTCAGGGAG agtgttgattacgcggggactccaggtccccatcctttgcttctctccagATGGCCTATTTGGCCTTCTTGATGTTGTTCACCTATACAGTTTTAGTTGAAATGCAGCCTCAACCCAGTGTACATGAGTGGCTTGTAATTATATATATCTTTATTAAGGCCATTGAGAAGGTCAGAGAGgtaagtaacatttgggaaccattgatgtaagaaggtttgctgctgctgag Alignment from Pairagon ATGGCTTATTTGGCATTCCTCATGCTGTTCACTTACACAGTGTTGGTGGAGATGCAGCCCCAACCCAGCGTGCACGAATGGCTTGTCATCATCTACATCTTCACCAATGCTATTGAGAAGGTCAGGGAG agtgttgattacgcggggactccaggtccccatcctttgcttctctccagATGGCCTATTTGGCCTTCTTGATGTTGTTCACCTATACAGTTTTAGTTGAAATGCAGCCTCAACCCAGTGTACATGAGTGGCTTGTAATTATATATATCTTTATTAAGGCCATTGAGAAGGTCAGAGAGgtaagtaacatttgggaaccattgatgtaagaaggtttgctgctgctgag Alignment from Exonerate_protein2genome ATGGCTTATTTGGCATTCCTCATGCTGTTCACTTACACAGTGTTGGTGGAGATGCAGCCCCAACCCAGCGTGCACGAATGGCTTGTCATCATCTACATCTTCACCAATGCTATTGAGAAGGTCAGGGAG agtgttgattacgcggggactccaggtccccatcctttgcttctctccagATGGCCTATTTGGCCTTCTTGATGTTGTTCACCTATACAGTTTTAGTTGAAATGCAGCCTCAACCCAGTGTACATGAGTGGCTTGTAATTATATATATCTTTATTAAGGCCATTGAGAAGGTCAGAGAGgtaagtaacatttgggaaccattgatgtaagaaggtttgctgctgctgag Alignment from Exonerate_coding2genome ATGGCTTATTTGGCATTCCTCATGCTGTTCACTTACACAGTGTTGGTGGAGATGCAGCCCCAACCCAGCGTGCACGAATGGCTTGTCATCATCTACATCTTCACCAATGCTATTGAGAAGGTCAGGGAG agtgttgattacgcggggactccaggtccccatcctttgcttctctccagATGGCCTATTTGGCCTTCTTGATGTTGTTCACCTATACAGTTTTAGTTGAAATGCAGCCTCAACCCAGTGTACATGAGTGGCTTGTAATTATATATATCTTTATTAAGGCCATTGAGAAGGTCAGAGAGgtaagtaacatttgggaaccattgatgtaagaaggtttgctgctgctgag Alignment from GeneWise ATGGCTTATTTGGCATTCCTCATGCTGTTCACTTACACAGTGTTGGTGGAGATGCAGCCCCAACCCAGCGTGCACGAATGGCTTGTCATCATCTACATCTTCACCAATGCTATTGAGAAGGTCAGGGAG agtgttgattacgcggggactccaggtccccatcctttgcttctctccagATGGCCTATTTGGCCTTCTTGATGTTGTTCACCTATACAGTTTTAGTTGAAATGCAGCCTCAACCCAGTGTACATGAGTGGCTTGTAATTATATATATCTTTATTAAGGCCATTGAGAAGGTCAGAGAGgtaagtaacatttgggaaccattgatgtaagaaggtttgctgctgctgag #### Trpm6_ID4490_26 --> 1 - 1 Original Alignment gGTATCAGAGATGTTTTTCCAACTGAAAGAAATGAATGAAAAAGTATCTTTTATAAAGGACTCCCTACTATCCCTGGACAGCCAGGTGGGACACCTTCAGGACCTCTCGGCCATAACTGTTGACACCTTAAAGGTCCTTTCTGCTGTTGACACCTTGCAAGAAGATGAGATTCTTTTGGCCAACAGAAAGCATTCTACTTGCAGAAAACGTCCCCACAGCTGGACCAATGTCATCTGTGCAAAGGTTCTAAGTGACATGGAAAGCTGTGGGAAGAAGAAACTTCAGTATTATAGCATGCCCCCTTCTTTGCTGAGGAGCCTCGCTAGAAGTCAGCTTCCCCCAAGTGTGCAGAGGGGTGCACTTGTAGAGGTTACGCACAGTAAGAGAGAGGCCTCACATGTAAGAGAAGAGCAGGAGGAACGAGAAATGGAACAGAGGACAACGGCTTCTGGGATTTCCCATGTCAGACAAGCACACTCTAAGTATGGCCAGTTTCTCCTGGTTCCATCTTCTGGAAAGCAAGTTCCTTTGTCTTTGGAAACCCCGCCACATCTTTTCAGATCATCTGAGGAGGCAGGTATAGATGGTCTGGTATTGGAGCATATACACCAAAGTGATCTCACCACCCACTTGCCTCAGCAGACCCCTGCTGCCTCCCACCAGGCATTGGTAGCGGAACACAAAGACCAACATGAGGCAGTTACACAGATGTCAGACAAACCTGCCAAGGCAGAACAAGACTTGCTCGCATTCAGTGGCACACCTGCTCCCATGACAGTGACTTCTCTTCCTTCGAGAGCCATCAGCATGCAAGATGAAGGTGGATATGTAAACTGGGCATTTTCAGAAAATGATGAAACAGGTGTGTTTAGCTTTAAAAAAAAGTGGAAAACTTGCTTGGCCTCCACTTGCAATAGTGACTCCAATCCTGGTGGAGACTACTTCCTGCACACTGGAGGTAGATCCGGACTGGAT---AACTCAAGAAGACTGGCCCAGAGTTGTGAGTGCCCAGCAGGACCGTGGACCCAGGCAAGAAGATCCTTTTGGATCAATCCTCTCTGCAGAGATAAAGCTCTCATTAAGAGTCATAGTTTTAGATTCCACAAGGAGGAGAAACTGAGGAAGACCTGGAAGAACAACa tgtgacccaacaaacatgtattgtaaatttggctcctgttctcatttcaggGTACCGGAGATGTTCTTCCAGCTGAAAGAGATGAAT------GTATCTTTCATAAACGATTCTCTACTTTCCCTCGATAGCCAGGTGGGGCACCTTCACGACCTTTCAGCCATAACTGTTGACACCTTGAGAGTCCTTTCTACAGTACATGGCTCACAAGAAGAGGAGATCCTTCTTGCAAACAGAGAACATTCAACCTCTAGGGAATGTCCCCACAGTTGGATCAATGTCATTTGTGCAAAAGTACTAAGTGACATGGAAAGCCGT------GAGAAA---------CACAGCATGCCCCCCTCTGTGTTGAGGAGTCTTGCTCGAAGC---TTGCCCCCAAGTGTACAGAGG---GCACATGTTGAGGTTACACATAGCAAAAGAGAGGCTTCACACATAAGTGAAGAGCAG---GAACGAGAAATGGAGCAGCGAGCAACAACTTCTGGGATTTTTCCCATAGGGCAGGCCCATTTGAAATATGGCCAGTTCCTCCTGGTGCCAGCATCTGGAAAGCAAGTTCCTCTGTCACTGGAGACGCCACCACATCTCTTTAGATCATCAGAGGAGACAGGTATAGATGGACTGGTG---GAACAGATACCCCAAAGTGACCTTACCACTCATTTGCCACAGGAAACCCCTGCAGCTTCTCACCAGGCATTAGTGGCAGAACACAAAGATCAACATGAGGCAGTTACACAGATGTCAGACAAACCAACCAGGGCAGAACAGGAACTGCTTGCTTTCAGTGACTCATCTGCACCAATGACATTAACATCTCTCCCTTCGAGAGCCATCACCATGCAAGATGAA---GGTTATGTGAATTGGGCATTTACAGAAAATGATGAAACAGGTGTGTTTCATTTCAAAAAGAAGTGGAAAAAATGTTTAGACTCCACTTGCAACAGTGACTCCAATCCTGGTGGAGATTACTTTCTTCAGACTGGTGGTAGGTCTGGACTTGATGATAATTCAAGAAAACTAGTACAGAGTTGTGAGTGCGTAGCAGGACCATGGACACAAGCAAGACGATCATTTTGGATCAATCCTCTTTGCAGAGACAAAGCTCTTATTAAGAGTCATGGATTTAGATTCCAAAATGAAGAGAAGCTGCGGAAGACCTGGAAGAACAATagtgagtaacacttgtaacttcttgtcatttgatcccccatacccataact Alignment from CESAR gGTATCAGAGATGTTTTTCCAACTGAAAGAAATGAATGAAAAAGTATCTTTTATAAAGGACTCCCTACTATCCCTGGACAGCCAGGTGGGACACCTTCAGGACCTCTCGGCCATAACTGTTGACACCTTAAAGGTCCTTTCTGCTGTTGACACCTTGCAAGAAGATGAGATTCTTTTGGCCAACAGAAAGCATTCTACTTGCAGAAAACGTCCCCACAGCTGGACCAATGTCATCTGTGCAAAGGTTCTAAGTGACATGGAAAGCTGTGGGAAGAAGAAACTTCAGTATTATAGCATGCCCCCTTCTTTGCTGAGGAGCCTCGCTAGAAGTCAGCTTCCCCCAAGTGTGCAGAGGGGTGCACTTGTAGAGGTTACGCACAGTAAGAGAGAGGCCTCACATGTAAGAGAAGAGCAGGAGGAACGAGAAATGGAACAGAGGACAACGGCTTCTGGGATTTCCCATGTCAGACAAGCACACTCTAAGTATGGCCAGTTTCTCCTGGTTCCATCTTCTGGAAAGCAAGTTCCTTTGTCTTTGGAAACCCCGCCACATCTTTTCAGATCATCTGAGGAGGCAGGTATAGATGGTCTGGTATTGGAGCATATACACCAAAGTGATCTCACCACCCACTTGCCTCAGCAGACCCCTGCTGCCTCCCACCAGGCATTGGTAGCGGAACACAAAGACCAACATGAGGCAGTTACACAGATGTCAGACAAACCTGCCAAGGCAGAACAAGACTTGCTCGCATTCAGTGGCACACCTGCTCCCATGACAGTGACTTCTCTTCCTTCGAGAGCCATCAGCATGCAAGATGAAGGTGGATATGTAAACTGGGCATTTTCAGAAAATGATGAAACAGGTGTGTTTAGCTTTAAAAAAAAGTGGAAAACTTGCTTGGCCTCCACTTGCAATAGTGACTCCAATCCTGGTGGAGACTACTTCCTGCACACTGGAGGTAGATCCGGACTG---GATAACTCAAGAAGACTGGCCCAGAGTTGTGAGTGCCCAGCAGGACCGTGGACCCAGGCAAGAAGATCCTTTTGGATCAATCCTCTCTGCAGAGATAAAGCTCTCATTAAGAGTCATAGTTTTAGATTCCACAAGGAGGAGAAACTGAGGAAGACCTGGAAGAACAACa tgtgacccaacaaacatgtattgtaaatttggctcctgttctcatttcaggGTACCGGAGATGTTCTTCCAGCTGAAAGAGATGAAT------GTATCTTTCATAAACGATTCTCTACTTTCCCTCGATAGCCAGGTGGGGCACCTTCACGACCTTTCAGCCATAACTGTTGACACCTTGAGAGTCCTTTCTACAGTACATGGCTCACAAGAAGAGGAGATCCTTCTTGCAAACAGAGAACATTCAACCTCTAGGGAATGTCCCCACAGTTGGATCAATGTCATTTGTGCAAAAGTACTAAGTGACATGGAAAGCCGTGAGAAA---------------CACAGCATGCCCCCCTCTGTGTTGAGGAGTCTTGCTCGAAGC---TTGCCCCCAAGTGTACAGAGG---GCACATGTTGAGGTTACACATAGCAAAAGAGAGGCTTCACACATAAGTGAAGAGCAG---GAACGAGAAATGGAGCAGCGAGCAACAACTTCTGGGATTTTTCCCATAGGGCAGGCCCATTTGAAATATGGCCAGTTCCTCCTGGTGCCAGCATCTGGAAAGCAAGTTCCTCTGTCACTGGAGACGCCACCACATCTCTTTAGATCATCAGAGGAGACAGGTATAGATGGACTGGTG---GAACAGATACCCCAAAGTGACCTTACCACTCATTTGCCACAGGAAACCCCTGCAGCTTCTCACCAGGCATTAGTGGCAGAACACAAAGATCAACATGAGGCAGTTACACAGATGTCAGACAAACCAACCAGGGCAGAACAGGAACTGCTTGCTTTCAGTGACTCATCTGCACCAATGACATTAACATCTCTCCCTTCGAGAGCCATCACCATGCAAGATGAAGGT---TATGTGAATTGGGCATTTACAGAAAATGATGAAACAGGTGTGTTTCATTTCAAAAAGAAGTGGAAAAAATGTTTAGACTCCACTTGCAACAGTGACTCCAATCCTGGTGGAGATTACTTTCTTCAGACTGGTGGTAGGTCTGGACTTGATGATAATTCAAGAAAACTAGTACAGAGTTGTGAGTGCGTAGCAGGACCATGGACACAAGCAAGACGATCATTTTGGATCAATCCTCTTTGCAGAGACAAAGCTCTTATTAAGAGTCATGGATTTAGATTCCAAAATGAAGAGAAGCTGCGGAAGACCTGGAAGAACAATagtgagtaacacttgtaacttcttgtcatttgatcccccatacccataact Alignment from Spaln_aa2Genome GGTATCAGAGATGTTTTTCCAACTGAAAGAAATGAATGAAAAAGTATCTTTTATAAAGGACTCCCTACTATCCCTGGACAGCCAGGTGGGACACCTTCAGGACCTCTCGGCCATAACTGTTGACACCTTAAAGGTCCTTTCTGCTGTTGACACCTTGCAAGAAGATGAGATTCTTTTGGCCAACAGAAAGCATTCTACTTGCAGAAAACGTCCCCACAGCTGGACCAATGTCATCTGTGCAAAGGTTCTAAGTGACATGGAAAGCTGTGGGAAGAAGAAACTTCAGTATTATAGCATGCCCCCTTCTTTGCTGAGGAGCCTCGCTAGAAGTCAGCTTCCCCCAAGTGTGCAGAGGGGTGCACTTGTAGAGGTTACGCACAGTAAGAGAGAGGCCTCACATGTAAGAGAAGAGCAGGAGGAACGAGAAATGGAACAGAGGACAACGGCTTCTGGGATTTCCCATGTCAGACAAGCACACTCTAAGTATGGCCAGTTTCTCCTGGTTCCATCTTCTGGAAAGCAAGTTCCTTTGTCTTTGGAAACCCCGCCACATCTTTTCAGATCATCTGAGGAGGCAGGTATAGATGGTCTGGTATTGGAGCATATACACCAAAGTGATCTCACCACCCACTTGCCTCAGCAGACCCCTGCTGCCTCCCACCAGGCATTGGTAGCGGAACACAAAGACCAACATGAGGCAGTTACACAGATGTCAGACAAACCTGCCAAGGCAGAACAAGACTTGCTCGCATTCAGTGGCACACCTGCTCCCATGACAGTGACTTCTCTTCCTTCGAGAGCCATCAGCATGCAAGATGAAGGTGGATATGTAAACTGGGCATTTTCAGAAAATGATGAAACAGGTGTGTTTAGCTTTAAAAAAAAGTGGAAAACTTGCTTGGCCTCCACTTGCAATAGTGACTCCAATCCTGGTGGAGACTACTTCCTGCACACTGGAGGTAGATCCGGACTG---GATAACTCAAGAAGACTGGCCCAGAGTTGTGAGTGCCCAGCAGGACCGTGGACCCAGGCAAGAAGATCCTTTTGGATCAATCCTCTCTGCAGAGATAAAGCTCTCATTAAGAGTCATAGTTTTAGATTCCACAAGGAGGAGAAACTGAGGAAGACCTGGAAGAACAACA tgtgacccaacaaacatgtattgtaaatttggctcctgttctcatttcagGGTACCGGAGATGTTCTTCCAGCTGAAAGAGATGAAT------GTATCTTTCATAAACGATTCTCTACTTTCCCTCGATAGCCAGGTGGGGCACCTTCACGACCTTTCAGCCATAACTGTTGACACCTTGAGAGTCCTTTCTACAGTACATGGCTCACAAGAAGAGGAGATCCTTCTTGCAAACAGAGAACATTCAACCTCTAGGGAATGTCCCCACAGTTGGATCAATGTCATTTGTGCAAAAGTACTAAGTGACATGGAAAGCCGTGAGAAA---------------CACAGCATGCCCCCCTCTGTGTTGAGGAGTCTTGCTCGAAGC---TTGCCCCCAAGTGTACAGAGG---GCACATGTTGAGGTTACACATAGCAAAAGAGAGGCTTCACACATAAGTGAAGAGCAG---GAACGAGAAATGGAGCAGCGAGCAACAACTTCTGGGATTTTTCCCATAGGGCAGGCCCATTTGAAATATGGCCAGTTCCTCCTGGTGCCAGCATCTGGAAAGCAAGTTCCTCTGTCACTGGAGACGCCACCACATCTCTTTAGATCATCAGAGGAGACAGGTATAGATGGACTGGTG---GAACAGATACCCCAAAGTGACCTTACCACTCATTTGCCACAGGAAACCCCTGCAGCTTCTCACCAGGCATTAGTGGCAGAACACAAAGATCAACATGAGGCAGTTACACAGATGTCAGACAAACCAACCAGGGCAGAACAGGAACTGCTTGCTTTCAGTGACTCATCTGCACCAATGACATTAACATCTCTCCCTTCGAGAGCCATCACCATGCAAGATGAA---GGTTATGTGAATTGGGCATTTACAGAAAATGATGAAACAGGTGTGTTTCATTTCAAAAAGAAGTGGAAAAAATGTTTAGACTCCACTTGCAACAGTGACTCCAATCCTGGTGGAGATTACTTTCTTCAGACTGGTGGTAGGTCTGGACTTGATGATAATTCAAGAAAACTAGTACAGAGTTGTGAGTGCGTAGCAGGACCATGGACACAAGCAAGACGATCATTTTGGATCAATCCTCTTTGCAGAGACAAAGCTCTTATTAAGAGTCATGGATTTAGATTCCAAAATGAAGAGAAGCTGCGGAAGACCTGGAAGAACAATAgtgagtaacacttgtaacttcttgtcatttgatcccccatacccataact Alignment from Spaln_nt2Genome GGTATCAGAGATGTTTTTCCAACTGAAAGAAATGAATGAAAAAGTATCTTTTATAAAGGACTCCCTACTATCCCTGGACAGCCAGGTGGGACACCTTCAGGACCTCTCGGCCATAACTGTTGACACCTTAAAGGTCCTTTCTGCTGTTGACACCTTGCAAGAAGATGAGATTCTTTTGGCCAACAGAAAGCATTCTACTTGCAGAAAACGTCCCCACAGCTGGACCAATGTCATCTGTGCAAAGGTTCTAAGTGACATGGAAAGCTGTGGGAAGAAGAAACTTCAGTATTATAGCATGCCCCCTTCTTTGCTGAGGAGCCTCGCTAGAAGTCAGCTT-CCCCCAAGTGTGCAGAGGGGTGCACTTGTAGAGGTTACGCACAGTAAGAGAGAGGCCTCACATGTAAGAGAAGAGCAGGAGGAACGAGAAATGGAACAGAGGACAACGGCTTCTGGGATTTCCCATGTCAGACAAGCACACTCTAAGTATGGCCAGTTTCTCCTGGTTCCATCTTCTGGAAAGCAAGTTCCTTTGTCTTTGGAAACCCCGCCACATCTTTTCAGATCATCTGAGGAGGCAGGTATAGATGGTCTGGTATTGGAGCATATACACCAAAGTGATCTCACCACCCACTTGCCTCAGCAGACCCCTGCTGCCTCCCACCAGGCATTGGTAGCGGAACACAAAGACCAACATGAGGCAGTTACACAGATGTCAGACAAACCTGCCAAGGCAGAACAAGACTTGCTCGCATTCAGTGGCACACCTGCTCCCATGACAGTGACTTCTCTTCCTTCGAGAGCCATCAGCATGCAAGATGAAGGTGGATATGTAAACTGGGCATTTTCAGAAAATGATGAAACAGGTGTGTTTAGCTTTAAAAAAAAGTGGAAAACTTGCTTGGCCTCCACTTGCAATAGTGACTCCAATCCTGGTGGAGACTACTTCCTGCACACTGGAGGTAGATCCGGACTGGAT---AACTCAAGAAGACTGGCCCAGAGTTGTGAGTGCCCAGCAGGACCGTGGACCCAGGCAAGAAGATCCTTTTGGATCAATCCTCTCTGCAGAGATAAAGCTCTCATTAAGAGTCATAGTTTTAGATTCCACAAGGAGGAGAAACTGAGGAAGACCTGGAAGAACAACA tgtgacccaacaaacatgtattgtaaatttggctcctgttctcatttcagGGTACCGGAGATGTTCTTCCAGCTGAAAGAGATGAAT------GTATCTTTCATAAACGATTCTCTACTTTCCCTCGATAGCCAGGTGGGGCACCTTCACGACCTTTCAGCCATAACTGTTGACACCTTGAGAGTCCTTTCTACAGTACATGGCTCACAAGAAGAGGAGATCCTTCTTGCAAACAGAGAACATTCAACCTCTAGGGAATGTCCCCACAGTTGGATCAATGTCATTTGTGCAAAAGTACTAAGTGACATGGAAAGCCGTG------AGAAAC---------ACAGCATGCCCCCCTCTGTGTTGAGGAGTCTTGCTCGA----AGCTTGCCCCCAAGTGTACAGAGG---GCACATGTTGAGGTTACACATAGCAAAAGAGAGGCTTCACACATAAGTGAAGAGC---AGGAACGAGAAATGGAGCAGCGAGCAACAACTTCTGGGATTTTTCCCATAGGGCAGGCCCATTTGAAATATGGCCAGTTCCTCCTGGTGCCAGCATCTGGAAAGCAAGTTCCTCTGTCACTGGAGACGCCACCACATCTCTTTAGATCATCAGAGGAGACAGGTATAGATGGACTGG---TGGAACAGATACCCCAAAGTGACCTTACCACTCATTTGCCACAGGAAACCCCTGCAGCTTCTCACCAGGCATTAGTGGCAGAACACAAAGATCAACATGAGGCAGTTACACAGATGTCAGACAAACCAACCAGGGCAGAACAGGAACTGCTTGCTTTCAGTGACTCATCTGCACCAATGACATTAACATCTCTCCCTTCGAGAGCCATCACCATGCAAGATGAAGGT---TATGTGAATTGGGCATTTACAGAAAATGATGAAACAGGTGTGTTTCATTTCAAAAAGAAGTGGAAAAAATGTTTAGACTCCACTTGCAACAGTGACTCCAATCCTGGTGGAGATTACTTTCTTCAGACTGGTGGTAGGTCTGGACTTGATGATAATTCAAGAAAACTAGTACAGAGTTGTGAGTGCGTAGCAGGACCATGGACACAAGCAAGACGATCATTTTGGATCAATCCTCTTTGCAGAGACAAAGCTCTTATTAAGAGTCATGGATTTAGATTCCAAAATGAAGAGAAGCTGCGGAAGACCTGGAAGAACAATAgtgagtaacacttgtaacttcttgtcatttgatcccccatacccataact Alignment from Pairagon GGTATCAGAGATGTTTTTCCAACTGAAAGAAATGAATGAAAAAGTATCTTTTATAAAGGACTCCCTACTATCCCTGGACAGCCAGGTGGGACACCTTCAGGACCTCTCGGCCATAACTGTTGACACCTTAAAGGTCCTTTCTGCTGTTGACACCTTGCAAGAAGATGAGATTCTTTTGGCCAACAGAAAGCATTCTACTTGCAGAAAACGTCCCCACAGCTGGACCAATGTCATCTGTGCAAAGGTTCTAAGTGACATGGAAAGCTGTGGGAAGAAGAAACTTCAGTATTATAGCATGCCCCCTTCTTTGCTGAGGAGCCTCGCTAGAAGTCAGCTT-CCCCCAAGTGTGCAGAGGGGTGCACTTGTAGAGGTTACGCACAGTAAGAGAGAGGCCTCACATGTAAGAGAAGAGCAGGAGGAACGAGAAATGGAACAGAGGACAACGGCTTCTGGGATTT---------------CCCATGTCAGACAAGCACACTCTAAGTATGGCCAGTTTCTCCTGGTTCCATCTTCTGGAAAGCAAGTTCCTTTGTCTTTGGAAACCCCGCCACATCTTTTCAGATCATCTGAGGAGGCAGGTATAGATGGTCTGGTATTGGAGCATATACACCAAAGTGATCTCACCACCCACTTGCCTCAGCAGACCCCTGCTGCCTCCCACCAGGCATTGGTAGCGGAACACAAAGACCAACATGAGGCAGTTACACAGATGTCAGACAAACCTGCCAAGGCAGAACAAGACTTGCTCGCATTCAGTGGCACACCTGCTCCCATGACAGTGACTTCTCTTCCTTCGAGAGCCATCAGCATGCAAGATGAAGGTGGATATGTAAACTGGGCATTTTCAGAAAATGATGAAACAGGTGTGTTTAGCTTTAAAAAAAAGTGGAAAACTTGCTTGGCCTCCACTTGCAATAGTGACTCCAATCCTGGTGGAGACTACTTCCTGCACACTGGAGGTAGATCCGGACT---GGATAACTCAAGAAGACTGGCCCAGAGTTGTGAGTGCCCAGCAGGACCGTGGACCCAGGCAAGAAGATCCTTTTGGATCAATCCTCTCTGCAGAGATAAAGCTCTCATTAAGAGTCATAGTTTTAGATTCCACAAGGAGGAGAAACTGAGGAAGACCTGGAAGAACAACA tgtgacccaacaaacatgtattgtaaatttggctcctgttctcatttcagGGTACCGGAGATGTTCTTCCAGCTGAAAGAGATGAAT------GTATCTTTCATAAACGATTCTCTACTTTCCCTCGATAGCCAGGTGGGGCACCTTCACGACCTTTCAGCCATAACTGTTGACACCTTGAGAGTCCTTTCTACAGTACATGGCTCACAAGAAGAGGAGATCCTTCTTGCAAACAGAGAACATTCAACCTCTAGGGAATGTCCCCACAGTTGGATCAATGTCATTTGTGCAAAAGTACTAAGTGACATGGAAAGCCGTG------AGAAAC---------ACAGCATGCCCCCCTCTGTGTTGAGGAGTCTTGCTCGA----AGCTTGCCCCCAAGTGTACAGAGG---GCACATGTTGAGGTTACACATAGCAAAAGAGAGGCTTCACACATAAGTGAAGAGC---AGGAACGAGAAATGGAGCAGCGAGCAACAACTTCTGGGATTTTTCCCATAGGGCAGGCCCAT---------------TTGAAATATGGCCAGTTCCTCCTGGTGCCAGCATCTGGAAAGCAAGTTCCTCTGTCACTGGAGACGCCACCACATCTCTTTAGATCATCAGAGGAGACAGGTATAGATGGACTGG---TGGAACAGATACCCCAAAGTGACCTTACCACTCATTTGCCACAGGAAACCCCTGCAGCTTCTCACCAGGCATTAGTGGCAGAACACAAAGATCAACATGAGGCAGTTACACAGATGTCAGACAAACCAACCAGGGCAGAACAGGAACTGCTTGCTTTCAGTGACTCATCTGCACCAATGACATTAACATCTCTCCCTTCGAGAGCCATCACCATGCAAGATGAAGGT---TATGTGAATTGGGCATTTACAGAAAATGATGAAACAGGTGTGTTTCATTTCAAAAAGAAGTGGAAAAAATGTTTAGACTCCACTTGCAACAGTGACTCCAATCCTGGTGGAGATTACTTTCTTCAGACTGGTGGTAGGTCTGGACTTGATGATAATTCAAGAAAACTAGTACAGAGTTGTGAGTGCGTAGCAGGACCATGGACACAAGCAAGACGATCATTTTGGATCAATCCTCTTTGCAGAGACAAAGCTCTTATTAAGAGTCATGGATTTAGATTCCAAAATGAAGAGAAGCTGCGGAAGACCTGGAAGAACAATAgtgagtaacacttgtaacttcttgtcatttgatcccccatacccataact Alignment from Exonerate_protein2genome GGTATCAGAGATGTTTTTCCAACTGAAAGAAATGAATGAAAAAGTATCTTTTATAAAGGACTCCCTACTATCCCTGGACAGCCAGGTGGGACACCTTCAGGACCTCTCGGCCATAACTGTTGACACCTTAAAGGTCCTTTCTGCTGTTGACACCTTGCAAGAAGATGAGATTCTTTTGGCCAACAGAAAGCATTCTACTTGCAGAAAACGTCCCCACAGCTGGACCAATGTCATCTGTGCAAAGGTTCTAAGTGACATGGAAAGCTGTGGGAAGAAGAAACTTCAGTATTATAGCATGCCCCCTTCTTTGCTGAGGAGCCTCGCTAGAAGTCAGCTTCCCCCAAGTGTGCAGAGGGGTGCACTTGTAGAGGTTACGCACAGTAAGAGAGAGGCCTCACATGTAAGAGAAGAGCAGGAGGAACGAGAAATGGAACAGAGGACAACGGCTTCTGGGATTTCCCATGTCAGACAAGCACACTCTAAGTATGGCCAGTTTCTCCTGGTTCCATCTTCTGGAAAGCAAGTTCCTTTGTCTTTGGAAACCCCGCCACATCTTTTCAGATCATCTGAGGAGGCAGGTATAGATGGTCTGGTATTGGAGCATATACACCAAAGTGATCTCACCACCCACTTGCCTCAGCAGACCCCTGCTGCCTCCCACCAGGCATTGGTAGCGGAACACAAAGACCAACATGAGGCAGTTACACAGATGTCAGACAAACCTGCCAAGGCAGAACAAGACTTGCTCGCATTCAGTGGCACACCTGCTCCCATGACAGTGACTTCTCTTCCTTCGAGAGCCATCAGCATGCAAGATGAAGGTGGATATGTAAACTGGGCATTTTCAGAAAATGATGAAACAGGTGTGTTTAGCTTTAAAAAAAAGTGGAAAACTTGCTTGGCCTCCACTTGCAATAGTGACTCCAATCCTGGTGGAGACTACTTCCTGCACACTGGAGGTAGATCCGGACTG---GATAACTCAAGAAGACTGGCCCAGAGTTGTGAGTGCCCAGCAGGACCGTGGACCCAGGCAAGAAGATCCTTTTGGATCAATCCTCTCTGCAGAGATAAAGCTCTCATTAAGAGTCATAGTTTTAGATTCCACAAGGAGGAGAAACTGAGGAAGACCTGGAAGAACAACA tgtgacccaacaaacatgtattgtaaatttggctcctgttctcatttcagGGTACCGGAGATGTTCTTCCAGCTGAAAGAGATGAAT------GTATCTTTCATAAACGATTCTCTACTTTCCCTCGATAGCCAGGTGGGGCACCTTCACGACCTTTCAGCCATAACTGTTGACACCTTGAGAGTCCTTTCTACAGTACATGGCTCACAAGAAGAGGAGATCCTTCTTGCAAACAGAGAACATTCAACCTCTAGGGAATGTCCCCACAGTTGGATCAATGTCATTTGTGCAAAAGTACTAAGTGACATGGAAAGCCGTGAGAAA---------------CACAGCATGCCCCCCTCTGTGTTGAGGAGTCTTGCTCGAAGC---TTGCCCCCAAGTGTACAGAGG---GCACATGTTGAGGTTACACATAGCAAAAGAGAGGCTTCACACATAAGTGAAGAGCAG---GAACGAGAAATGGAGCAGCGAGCAACAACTTCTGGGATTTTTCCCATAGGGCAGGCCCATTTGAAATATGGCCAGTTCCTCCTGGTGCCAGCATCTGGAAAGCAAGTTCCTCTGTCACTGGAGACGCCACCACATCTCTTTAGATCATCAGAGGAGACAGGTATAGATGGACTGGTG---GAACAGATACCCCAAAGTGACCTTACCACTCATTTGCCACAGGAAACCCCTGCAGCTTCTCACCAGGCATTAGTGGCAGAACACAAAGATCAACATGAGGCAGTTACACAGATGTCAGACAAACCAACCAGGGCAGAACAGGAACTGCTTGCTTTCAGTGACTCATCTGCACCAATGACATTAACATCTCTCCCTTCGAGAGCCATCACCATGCAAGATGAA---GGTTATGTGAATTGGGCATTTACAGAAAATGATGAAACAGGTGTGTTTCATTTCAAAAAGAAGTGGAAAAAATGTTTAGACTCCACTTGCAACAGTGACTCCAATCCTGGTGGAGATTACTTTCTTCAGACTGGTGGTAGGTCTGGACTTGATGATAATTCAAGAAAACTAGTACAGAGTTGTGAGTGCGTAGCAGGACCATGGACACAAGCAAGACGATCATTTTGGATCAATCCTCTTTGCAGAGACAAAGCTCTTATTAAGAGTCATGGATTTAGATTCCAAAATGAAGAGAAGCTGCGGAAGACCTGGAAGAACAATAgtgagtaacacttgtaacttcttgtcatttgatcccccatacccataact Alignment from Exonerate_coding2genome GGTATCAGAGATGTTTTTCCAACTGAAAGAAATGAATGAAAAAGTATCTTTTATAAAGGACTCCCTACTATCCCTGGACAGCCAGGTGGGACACCTTCAGGACCTCTCGGCCATAACTGTTGACACCTTAAAGGTCCTTTCTGCTGTTGACACCTTGCAAGAAGATGAGATTCTTTTGGCCAACAGAAAGCATTCTACTTGCAGAAAACGTCCCCACAGCTGGACCAATGTCATCTGTGCAAAGGTTCTAAGTGACATGGAAAGCTGTGGGAAGAAGAAACTTCAGTATTATAGCATGCCCCCTTCTTTGCTGAGGAGCCTCGCTAGAAGTCAGCTTCCCCCAAGTGTGCAGAGGGGTGCACTTGTAGAGGTTACGCACAGTAAGAGAGAGGCCTCACATGTAAGAGAAGAGCAGGAGGAACGAGAAATGGAACAGAGGACAACGGCTTCTGGGATTTCCCATGTCAGACAAGCACACTCTAAGTATGGCCAGTTTCTCCTGGTTCCATCTTCTGGAAAGCAAGTTCCTTTGTCTTTGGAAACCCCGCCACATCTTTTCAGATCATCTGAGGAGGCAGGTATAGATGGTCTGGTATTGGAGCATATACACCAAAGTGATCTCACCACCCACTTGCCTCAGCAGACCCCTGCTGCCTCCCACCAGGCATTGGTAGCGGAACACAAAGACCAACATGAGGCAGTTACACAGATGTCAGACAAACCTGCCAAGGCAGAACAAGACTTGCTCGCATTCAGTGGCACACCTGCTCCCATGACAGTGACTTCTCTTCCTTCGAGAGCCATCAGCATGCAAGATGAAGGTGGATATGTAAACTGGGCATTTTCAGAAAATGATGAAACAGGTGTGTTTAGCTTTAAAAAAAAGTGGAAAACTTGCTTGGCCTCCACTTGCAATAGTGACTCCAATCCTGGTGGAGACTACTTCCTGCACACTGGAGGTAGATCCGGACTG---GATAACTCAAGAAGACTGGCCCAGAGTTGTGAGTGCCCAGCAGGACCGTGGACCCAGGCAAGAAGATCCTTTTGGATCAATCCTCTCTGCAGAGATAAAGCTCTCATTAAGAGTCATAGTTTTAGATTCCACAAGGAGGAGAAACTGAGGAAGACCTGGAAGAACAACA tgtgacccaacaaacatgtattgtaaatttggctcctgttctcatttcagGGTACCGGAGATGTTCTTCCAGCTGAAAGAGATGAAT------GTATCTTTCATAAACGATTCTCTACTTTCCCTCGATAGCCAGGTGGGGCACCTTCACGACCTTTCAGCCATAACTGTTGACACCTTGAGAGTCCTTTCTACAGTACATGGCTCACAAGAAGAGGAGATCCTTCTTGCAAACAGAGAACATTCAACCTCTAGGGAATGTCCCCACAGTTGGATCAATGTCATTTGTGCAAAAGTACTAAGTGACATGGAAAGCCGTGAGAAA---------------CACAGCATGCCCCCCTCTGTGTTGAGGAGTCTTGCTCGAAGC---TTGCCCCCAAGTGTACAGAGG---GCACATGTTGAGGTTACACATAGCAAAAGAGAGGCTTCACACATAAGTGAAGAGCAG---GAACGAGAAATGGAGCAGCGAGCAACAACTTCTGGGATTTTTCCCATAGGGCAGGCCCATTTGAAATATGGCCAGTTCCTCCTGGTGCCAGCATCTGGAAAGCAAGTTCCTCTGTCACTGGAGACGCCACCACATCTCTTTAGATCATCAGAGGAGACAGGTATAGATGGACTGGTG---GAACAGATACCCCAAAGTGACCTTACCACTCATTTGCCACAGGAAACCCCTGCAGCTTCTCACCAGGCATTAGTGGCAGAACACAAAGATCAACATGAGGCAGTTACACAGATGTCAGACAAACCAACCAGGGCAGAACAGGAACTGCTTGCTTTCAGTGACTCATCTGCACCAATGACATTAACATCTCTCCCTTCGAGAGCCATCACCATGCAAGATGAA---GGTTATGTGAATTGGGCATTTACAGAAAATGATGAAACAGGTGTGTTTCATTTCAAAAAGAAGTGGAAAAAATGTTTAGACTCCACTTGCAACAGTGACTCCAATCCTGGTGGAGATTACTTTCTTCAGACTGGTGGTAGGTCTGGACTTGATGATAATTCAAGAAAACTAGTACAGAGTTGTGAGTGCGTAGCAGGACCATGGACACAAGCAAGACGATCATTTTGGATCAATCCTCTTTGCAGAGACAAAGCTCTTATTAAGAGTCATGGATTTAGATTCCAAAATGAAGAGAAGCTGCGGAAGACCTGGAAGAACAATAgtgagtaacacttgtaacttcttgtcatttgatcccccatacccataact Alignment from GeneWise GGTATCAGAGATGTTTTTCCAACTGAAAGAAATGAATGAAAAAGTATCTTTTATAAAGGACTCCCTACTATCCCTGGACAGCCAGGTGGGACACCTTCAGGACCTCTCGGCCATAACTGTTGACACCTTAAAGGTCCTTTCTGCTGTTGACACCTTGCAAGAAGATGAGATTCTTTTGGCCAACAGAAAGCATTCTACTTGCAGAAAACGTCCCCACAGCTGGACCAATGTCATCTGTGCAAAGGTTCTAAGTGACATGGAAAGCTGTGGGAAGAAGAAACTTCAGTATTATAGCATGCCCCCTTCTTTGCTGAGGAGCCTCGCTAGAAGTCAGCTTCCCCCAAGTGTGCAGAGGGGTGCACTTGTAGAGGTTACGCACAGTAAGAGAGAGGCCTCACATGTAAGAGAAGAGCAGGAGGAACGAGAAATGGAACAGAGGACAACGGCTTCTGGGATTTCCCATGTCAGACAAGCACACTCTAAGTATGGCCAGTTTCTCCTGGTTCCATCTTCTGGAAAGCAAGTTCCTTTGTCTTTGGAAACCCCGCCACATCTTTTCAGATCATCTGAGGAGGCAGGTATAGATGGTCTGGTATTGGAGCATATACACCAAAGTGATCTCACCACCCACTTGCCTCAGCAGACCCCTGCTGCCTCCCACCAGGCATTGGTAGCGGAACACAAAGACCAACATGAGGCAGTTACACAGATGTCAGACAAACCTGCCAAGGCAGAACAAGACTTGCTCGCATTCAGTGGCACACCTGCTCCCATGACAGTGACTTCTCTTCCTTCGAGAGCCATCAGCATGCAAGATGAAGGTGGATATGTAAACTGGGCATTTTCAGAAAATGATGAAACAGGTGTGTTTAGCTTTAAAAAAAAGTGGAAAACTTGCTTGGCCTCCACTTGCAATAGTGACTCCAATCCTGGTGGAGACTACTTCCTGCACACTGGAGGTAGATCCGGACTGGAT---AACTCAAGAAGACTGGCCCAGAGTTGTGAGTGCCCAGCAGGACCGTGGACCCAGGCAAGAAGATCCTTTTGGATCAATCCTCTCTGCAGAGATAAAGCTCTCATTAAGAGTCATAGTTTTAGATTCCACAAGGAGGAGAAACTGAGGAAGACCTGGAAGAACAACA tgtgacccaacaaacatgtattgtaaatttggctcctgttctcatttcagGGTACCGGAGATGTTCTTCCAGCTGAAAGAGATGAAT------GTATCTTTCATAAACGATTCTCTACTTTCCCTCGATAGCCAGGTGGGGCACCTTCACGACCTTTCAGCCATAACTGTTGACACCTTGAGAGTCCTTTCTACAGTACATGGCTCACAAGAAGAGGAGATCCTTCTTGCAAACAGAGAACATTCAACCTCTAGGGAATGTCCCCACAGTTGGATCAATGTCATTTGTGCAAAAGTACTAAGTGACATGGAAAGCCGTGAGAAA---------------CACAGCATGCCCCCCTCTGTGTTGAGGAGTCTTGCTCGAAGC---TTGCCCCCAAGTGTACAGAGG---GCACATGTTGAGGTTACACATAGCAAAAGAGAGGCTTCACACATAAGTGAAGAGCAGGAA---CGAGAAATGGAGCAGCGAGCAACAACTTCTGGGATTTTTCCCATAGGGCAGGCCCATTTGAAATATGGCCAGTTCCTCCTGGTGCCAGCATCTGGAAAGCAAGTTCCTCTGTCACTGGAGACGCCACCACATCTCTTTAGATCATCAGAGGAGACAGGTATAGATGGACTGGTG---GAACAGATACCCCAAAGTGACCTTACCACTCATTTGCCACAGGAAACCCCTGCAGCTTCTCACCAGGCATTAGTGGCAGAACACAAAGATCAACATGAGGCAGTTACACAGATGTCAGACAAACCAACCAGGGCAGAACAGGAACTGCTTGCTTTCAGTGACTCATCTGCACCAATGACATTAACATCTCTCCCTTCGAGAGCCATCACCATGCAAGATGAAGGT---TATGTGAATTGGGCATTTACAGAAAATGATGAAACAGGTGTGTTTCATTTCAAAAAGAAGTGGAAAAAATGTTTAGACTCCACTTGCAACAGTGACTCCAATCCTGGTGGAGATTACTTTCTTCAGACTGGTGGTAGGTCTGGACTTGATGATAATTCAAGAAAACTAGTACAGAGTTGTGAGTGCGTAGCAGGACCATGGACACAAGCAAGACGATCATTTTGGATCAATCCTCTTTGCAGAGACAAAGCTCTTATTAAGAGTCATGGATTTAGATTCCAAAATGAAGAGAAGCTGCGGAAGACCTGGAAGAACAATAgtgagtaacacttgtaacttcttgtcatttgatcccccatacccataact #### Trpm6_ID4495_30 --> 0 - 2 Original Alignment AACCGAGATAAAACCCCCACATGGAATTCTGGGAGCACCAGCCTCAGCAGGAGTTTTct gtttacagcgccatgggccatcagagatttccatcttctttctcccacagAATCAAGTCAAGCCCCCCACATGGAATTCAGGGAGTGCTCGTCTCAGTAGGAGTTTCctgtaagatgagtatctgtttgatatgagatccattgtgtggatcttatcta Alignment from CESAR AACCGAGATAAAACCCCCACATGGAATTCTGGGAGCACCAGCCTCAGCAGGAGTTTTct gtttacagcgccatgggccatcagagatttccatcttctttctcccacagAATCAAGTCAAGCCCCCCACATGGAATTCAGGGAGTGCTCGTCTCAGTAGGAGTTTCctgtaagatgagtatctgtttgatatgagatccattgtgtggatcttatcta Alignment from Spaln_aa2Genome AACCGAGATAAAACCCCCACATGGAATTCTGGGAGCACCAGCCTCAGCAGGAGTTTTCT gtttacagcgccatgggccatcagagatttccatcttctttctcccacagAATCAAGTCAAGCCCCCCACATGGAATTCAGGGAGTGCTCGTCTCAGTAGGAGTTTCCTgtaagatgagtatctgtttgatatgagatccattgtgtggatcttatcta Alignment from Spaln_nt2Genome AACCGAGATAAAACCCCCACATGGAATTCTGGGAGCACCAGCCTCAGCAGGAGTTTTCT gtttacagcgccatgggccatcagagatttccatcttctttctcccacagAATCAAGTCAAGCCCCCCACATGGAATTCAGGGAGTGCTCGTCTCAGTAGGAGTTTCCTgtaagatgagtatctgtttgatatgagatccattgtgtggatcttatcta Alignment from Pairagon AACCGAGATAAAACCCCCACATGGAATTCTGGGAGCACCAGCCTCAGCAGGAGTTTTCT gtttacagcgccatgggccatcagagatttccatcttctttctcccacagAATCAAGTCAAGCCCCCCACATGGAATTCAGGGAGTGCTCGTCTCAGTAGGAGTTTCCTgtaagatgagtatctgtttgatatgagatccattgtgtggatcttatcta Alignment from Exonerate_protein2genome AACCGAGATAAAACCCCCACATGGAATTCTGGGAGCACCAGCCTCAGCAGGAGTTTTCT gtttacagcgccatgggccatcagagatttccatcttctttctcccacagAATCAAGTCAAGCCCCCCACATGGAATTCAGGGAGTGCTCGTCTCAGTAGGAGTTTCCTgtaagatgagtatctgtttgatatgagatccattgtgtggatcttatcta Alignment from Exonerate_coding2genome AACCGAGATAAAACCCCCACATGGAATTCTGGGAGCACCAGCCTCAGCAGGAGTTTTCT gtttacagcgccatgggccatcagagatttccatcttctttctcccacagAATCAAGTCAAGCCCCCCACATGGAATTCAGGGAGTGCTCGTCTCAGTAGGAGTTTCCTgtaagatgagtatctgtttgatatgagatccattgtgtggatcttatcta Alignment from GeneWise AACCGAGATAAAACCCCCACATGGAATTCTGGGAGCACCAGCCTCAGCAGGAGTTTTCT gtttacagcgccatgggccatcagagatttccatcttctttctcccacagAATCAAGTCAAGCCCCCCACATGGAATTCAGGGAGTGCTCGTCTCAGTAGGAGTTTCCTgtaagatgagtatctgtttgatatgagatccattgtgtggatcttatcta #### Trpm6_ID4496_31 --> 1 - 1 Original Alignment aACAAGAAGTCCAAATGAAGTTCACa agtttttggacgtccacaaaactgaacgtaatttgtgattgtaattttagaACACGGAGTACAAACGAAGTCCACagtgggctataatattgactcacacagacttatgcgtgaatgtgttgatgg Alignment from CESAR aACAAGAAGTCCAAATGAAGTTCACa agtttttggacgtccacaaaactgaacgtaatttgtgattgtaattttagaACACGGAGTACAAACGAAGTCCACagtgggctataatattgactcacacagacttatgcgtgaatgtgttgatgg Alignment from Spaln_aa2Genome AACAAGAAGTCCAAATGAAGTTCACA agtttttggacgtccacaaaactgaacgtaatttgtgattgtaattttagAACACGGAGTACAAACGAAGTCCACAgtgggctataatattgactcacacagacttatgcgtgaatgtgttgatgg Alignment from Spaln_nt2Genome AACAAGAAGTCCAAATGAAGTTCACA agtttttggacgtccacaaaactgaacgtaatttgtgattgtaattttagAACACGGAGTACAAACGAAGTCCACAgtgggctataatattgactcacacagacttatgcgtgaatgtgttgatgg Alignment from Pairagon AACAAGAAGTCCAAATGAAGTTCACA agtttttggacgtccacaaaactgaacgtaatttgtgattgtaattttagAACACGGAGTACAAACGAAGTCCACAgtgggctataatattgactcacacagacttatgcgtgaatgtgttgatgg Alignment from Exonerate_protein2genome agtttttggacgtccacaaaactgaacgtaatttgtgattgtaattttagaacacggagtacaaacgaagtccacagtgggctataatattgactcacacagacttatgcgtgaatgtgttgatgg Alignment from Exonerate_coding2genome agtttttggacgtccacaaaactgaacgtaatttgtgattgtaattttagaacacggagtacaaacgaagtccacagtgggctataatattgactcacacagacttatgcgtgaatgtgttgatgg Alignment from GeneWise agtttttggacgtccacaaaactgaacgtaatttgtgattgtaattttagaacacggagtacaaacgaagtccacagtgggctataatattgactcacacagacttatgcgtgaatgtgttgatgg #### Trpm6_ID4499_32 --> 2 - 1 Original Alignment agATCTCAACCTCCTTAAAAAGCCCTCAAGAGCCTCACCACCATTATTCAg ctagggacctatttgttacccctattttacttccttgctttcccttgcagagATCTCAACATCCCTAAAAAGCCCTCAAGAGCCTCACCGGCATTACTCAggtaagccaagtgaatgatttagtttgtctacactcaatacttatgtaatt Alignment from CESAR agATCTCAACCTCCTTAAAAAGCCCTCAAGAGCCTCACCACCATTATTCAg ctagggacctatttgttacccctattttacttccttgctttcccttgcagagATCTCAACATCCCTAAAAAGCCCTCAAGAGCCTCACCGGCATTACTCAggtaagccaagtgaatgatttagtttgtctacactcaatacttatgtaatt Alignment from Spaln_aa2Genome AGATCTCAACCTCCTTAAAAAGCCCTCAAGAGCCTCACCACCATTATTCAG ctagggacctatttgttacccctattttacttccttgctttcccttgcagAGATCTCAACATCCCTAAAAAGCCCTCAAGAGCCTCACCGGCATTACTCAGgtaagccaagtgaatgatttagtttgtctacactcaatacttatgtaatt Alignment from Spaln_nt2Genome AGATCTCAACCTCCTTAAAAAGCCCTCAAGAGCCTCACCACCATTATTCAG ctagggacctatttgttacccctattttacttccttgctttcccttgcagAGATCTCAACATCCCTAAAAAGCCCTCAAGAGCCTCACCGGCATTACTCAGgtaagccaagtgaatgatttagtttgtctacactcaatacttatgtaatt Alignment from Pairagon AGATCTCAACCTCCTTAAAAAGCCCTCAAGAGCCTCACCACCATTATTCAG ctagggacctatttgttacccctattttacttccttgctttcccttgcagAGATCTCAACATCCCTAAAAAGCCCTCAAGAGCCTCACCGGCATTACTCAGgtaagccaagtgaatgatttagtttgtctacactcaatacttatgtaatt Alignment from Exonerate_protein2genome AACAAGAAGTCCAAATGAAGTTCACAAGATCTCAACCTCCTTAAAAAGCCCTCAAGAGCCTCACCACCATTATTCAG ctagggacctatttgttacccctaTTTTACTTCCTTGCTTTCCCTTGCAGAGATCTCAACATCCCTAAAAAGCCCTCAAGAGCCTCACCGGCATTACTCAGgtaagccaagtgaatgatttagtttgtctacactcaatacttatgtaatt Alignment from Exonerate_coding2genome AACAAGAAGTCCAAATGAAGTTCACAAGATCTCAACCTCCTTAAAAAGCCCTCAAGAGCCTCACCACCATTATTCAG ctagggacctatttgttacccctaTTTTACTTCCTTGCTTTCCCTTGCAGAGATCTCAACATCCCTAAAAAGCCCTCAAGAGCCTCACCGGCATTACTCAGgtaagccaagtgaatgatttagtttgtctacactcaatacttatgtaatt Alignment from GeneWise AGATCTCAACCTCCTTAAAAAGCCCTCAAGAGCCTCACCACCATTATTCAG ctagggacctatttgttacccctattttacttccttgctttcccttgcagAGATCTCAACATCCCTAAAAAGCCCTCAAGAGCCTCACCGGCATTACTCAGgtaagccaagtgaatgatttagtttgtctacactcaatacttatgtaatt #### Trpm6_ID4504_34 --> 2 - 0 Original Alignment caGGAGAGGAAGTGACCATCTACAAGCTTGAAGAAAGTTCTCCTCTGACCCTGGATAAGAGCATGTCCTCTTGGTCGCAGCATGGCAGAGCTGCCATGATTCAGGTGCTGTCACAAGAGGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTTATCAGCACCTGGTCTGAGGATGATGTTCTCAAGCCTGGGCAGGTTTTCATTGTGAAGTCTTTTCTCCCCGAGGTTGTGCAGACGTGGTATAAAATCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTTAGG gttgagctgatggatcattgaggtatcattgctggcctctcctccgacagctGGTGAAGAAGTGACTATATATAATCTTGAGGACAGCTTCCCCCTGACCCTTGATAAGAGCATATCCTCCTGGCTACAAGACAGCAGAGCAGCTATGATTCAGGTTCTGTCACAGGAAGAAATGGATGGGGTTCTACGCAAAGCCATGCAAGTCATCAGCACATGGTCTGAGGATGATGTTCTCAAGCCTGGACAAGTTTTCATTGTTAAGTCTTTCCTGCCAGATGTTGTGCAGACATGGTATAAAATTTTCCAGGAAAGCATGGTGCTTCATCTCTGCCTAAGAgtatgccgaagtgttcaatcctaggtcctcagacaagaatacctaatgca Alignment from CESAR caGGAGAGGAAGTGACCATCTACAAGCTTGAAGAAAGTTCTCCTCTGACCCTGGATAAGAGCATGTCCTCTTGGTCGCAGCATGGCAGAGCTGCCATGATTCAGGTGCTGTCACAAGAGGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTTATCAGCACCTGGTCTGAGGATGATGTTCTCAAGCCTGGGCAGGTTTTCATTGTGAAGTCTTTTCTCCCCGAGGTTGTGCAGACGTGGTATAAAATCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTTAGG gttgagctgatggatcattgaggtatcattgctggcctctcctccgacagctGGTGAAGAAGTGACTATATATAATCTTGAGGACAGCTTCCCCCTGACCCTTGATAAGAGCATATCCTCCTGGCTACAAGACAGCAGAGCAGCTATGATTCAGGTTCTGTCACAGGAAGAAATGGATGGGGTTCTACGCAAAGCCATGCAAGTCATCAGCACATGGTCTGAGGATGATGTTCTCAAGCCTGGACAAGTTTTCATTGTTAAGTCTTTCCTGCCAGATGTTGTGCAGACATGGTATAAAATTTTCCAGGAAAGCATGGTGCTTCATCTCTGCCTAAGAgtatgccgaagtgttcaatcctaggtcctcagacaagaatacctaatgca Alignment from Spaln_aa2Genome CAGGAGAGGAAGTGACCATCTACAAGCTTGAAGAAAGTTCTCCTCTGACCCTGGATAAGAGCATGTCCTCTTGGTCGCAGCATGGCAGAGCTGCCATGATTCAGGTGCTGTCACAAGAGGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTTATCAGCACCTGGTCTGAGGATGATGTTCTCAAGCCTGGGCAGGTTTTCATTGTGAAGTCTTTTCTCCCCGAGGTTGTGCAGACGTGGTATAAAATCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTTAGG gttgagctgatggatcattgaggtatcattgctggcctctcctccgacagCTGGTGAAGAAGTGACTATATATAATCTTGAGGACAGCTTCCCCCTGACCCTTGATAAGAGCATATCCTCCTGGCTACAAGACAGCAGAGCAGCTATGATTCAGGTTCTGTCACAGGAAGAAATGGATGGGGTTCTACGCAAAGCCATGCAAGTCATCAGCACATGGTCTGAGGATGATGTTCTCAAGCCTGGACAAGTTTTCATTGTTAAGTCTTTCCTGCCAGATGTTGTGCAGACATGGTATAAAATTTTCCAGGAAAGCATGGTGCTTCATCTCTGCCTAAGAgtatgccgaagtgttcaatcctaggtcctcagacaagaatacctaatgca Alignment from Spaln_nt2Genome CAGGAGAGGAAGTGACCATCTACAAGCTTGAAGAAAGTTCTCCTCTGACCCTGGATAAGAGCATGTCCTCTTGGTCGCAGCATGGCAGAGCTGCCATGATTCAGGTGCTGTCACAAGAGGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTTATCAGCACCTGGTCTGAGGATGATGTTCTCAAGCCTGGGCAGGTTTTCATTGTGAAGTCTTTTCTCCCCGAGGTTGTGCAGACGTGGTATAAAATCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTTAGG gttgagctgatggatcattgaggtatcattgctggcctctcctccgacagCTGGTGAAGAAGTGACTATATATAATCTTGAGGACAGCTTCCCCCTGACCCTTGATAAGAGCATATCCTCCTGGCTACAAGACAGCAGAGCAGCTATGATTCAGGTTCTGTCACAGGAAGAAATGGATGGGGTTCTACGCAAAGCCATGCAAGTCATCAGCACATGGTCTGAGGATGATGTTCTCAAGCCTGGACAAGTTTTCATTGTTAAGTCTTTCCTGCCAGATGTTGTGCAGACATGGTATAAAATTTTCCAGGAAAGCATGGTGCTTCATCTCTGCCTAAGAgtatgccgaagtgttcaatcctaggtcctcagacaagaatacctaatgca Alignment from Pairagon CAGGAGAGGAAGTGACCATCTACAAGCTTGAAGAAAGTTCTCCTCTGACCCTGGATAAGAGCATGTCCTCTTGGTCGCAGCATGGCAGAGCTGCCATGATTCAGGTGCTGTCACAAGAGGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTTATCAGCACCTGGTCTGAGGATGATGTTCTCAAGCCTGGGCAGGTTTTCATTGTGAAGTCTTTTCTCCCCGAGGTTGTGCAGACGTGGTATAAAATCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTTAGG gttgagctgatggatcattgaggtatcattgctggcctctcctccgacagCTGGTGAAGAAGTGACTATATATAATCTTGAGGACAGCTTCCCCCTGACCCTTGATAAGAGCATATCCTCCTGGCTACAAGACAGCAGAGCAGCTATGATTCAGGTTCTGTCACAGGAAGAAATGGATGGGGTTCTACGCAAAGCCATGCAAGTCATCAGCACATGGTCTGAGGATGATGTTCTCAAGCCTGGACAAGTTTTCATTGTTAAGTCTTTCCTGCCAGATGTTGTGCAGACATGGTATAAAATTTTCCAGGAAAGCATGGTGCTTCATCTCTGCCTAAGAgtatgccgaagtgttcaatcctaggtcctcagacaagaatacctaatgca Alignment from Exonerate_protein2genome CAGGAGAGGAAGTGACCATCTACAAGCTTGAAGAAAGTTCTCCTCTGACCCTGGATAAGAGCATGTCCTCTTGGTCGCAGCATGGCAGAGCTGCCATGATTCAGGTGCTGTCACAAGAGGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTTATCAGCACCTGGTCTGAGGATGATGTTCTCAAGCCTGGGCAGGTTTTCATTGTGAAGTCTTTTCTCCCCGAGGTTGTGCAGACGTGGTATAAAATCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTTAGG gttgagctgatggatcattgaggtatcattgctggcctctcctccgacagCTGGTGAAGAAGTGACTATATATAATCTTGAGGACAGCTTCCCCCTGACCCTTGATAAGAGCATATCCTCCTGGCTACAAGACAGCAGAGCAGCTATGATTCAGGTTCTGTCACAGGAAGAAATGGATGGGGTTCTACGCAAAGCCATGCAAGTCATCAGCACATGGTCTGAGGATGATGTTCTCAAGCCTGGACAAGTTTTCATTGTTAAGTCTTTCCTGCCAGATGTTGTGCAGACATGGTATAAAATTTTCCAGGAAAGCATGGTGCTTCATCTCTGCCTAAGAgtatgccgaagtgttcaatcctaggtcctcagacaagaatacctaatgca Alignment from Exonerate_coding2genome CAGGAGAGGAAGTGACCATCTACAAGCTTGAAGAAAGTTCTCCTCTGACCCTGGATAAGAGCATGTCCTCTTGGTCGCAGCATGGCAGAGCTGCCATGATTCAGGTGCTGTCACAAGAGGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTTATCAGCACCTGGTCTGAGGATGATGTTCTCAAGCCTGGGCAGGTTTTCATTGTGAAGTCTTTTCTCCCCGAGGTTGTGCAGACGTGGTATAAAATCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTTAGG gttgagctgatggatcattgaggtatcattgctggcctctcctccgacagCTGGTGAAGAAGTGACTATATATAATCTTGAGGACAGCTTCCCCCTGACCCTTGATAAGAGCATATCCTCCTGGCTACAAGACAGCAGAGCAGCTATGATTCAGGTTCTGTCACAGGAAGAAATGGATGGGGTTCTACGCAAAGCCATGCAAGTCATCAGCACATGGTCTGAGGATGATGTTCTCAAGCCTGGACAAGTTTTCATTGTTAAGTCTTTCCTGCCAGATGTTGTGCAGACATGGTATAAAATTTTCCAGGAAAGCATGGTGCTTCATCTCTGCCTAAGAgtatgccgaagtgttcaatcctaggtcctcagacaagaatacctaatgca Alignment from GeneWise CAGGAGAGGAAGTGACCATCTACAAGCTTGAAGAAAGTTCTCCTCTGACCCTGGATAAGAGCATGTCCTCTTGGTCGCAGCATGGCAGAGCTGCCATGATTCAGGTGCTGTCACAAGAGGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTTATCAGCACCTGGTCTGAGGATGATGTTCTCAAGCCTGGGCAGGTTTTCATTGTGAAGTCTTTTCTCCCCGAGGTTGTGCAGACGTGGTATAAAATCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTTAGG gttgagctgatggatcattgaggtatcattgctggcctctcctccgacagCTGGTGAAGAAGTGACTATATATAATCTTGAGGACAGCTTCCCCCTGACCCTTGATAAGAGCATATCCTCCTGGCTACAAGACAGCAGAGCAGCTATGATTCAGGTTCTGTCACAGGAAGAAATGGATGGGGTTCTACGCAAAGCCATGCAAGTCATCAGCACATGGTCTGAGGATGATGTTCTCAAGCCTGGACAAGTTTTCATTGTTAAGTCTTTCCTGCCAGATGTTGTGCAGACATGGTATAAAATTTTCCAGGAAAGCATGGTGCTTCATCTCTGCCTAAGAgtatgccgaagtgttcaatcctaggtcctcagacaagaatacctaatgca #### Trpm6_ID4505_35 --> 0 - 2 Original Alignment GAAATTCAACAGCAAAGAGCTGCCCAAAAACTCATCTATACCTTTAACCAAGTAAAACCACAAACCATTCCCTATACACCAag agagagtgggcttgcctcgtgtcattttgcgctttctctgtctgttccagGAAATTCAACAGCAAAGAGCCGCCCAAAAACTTATCTATACCTTTAACCAAGTGAAACCACAATCCATCCCCTACACACCAaggtgggtaaagagttagattaaagtgcatataataacgaagagtgatacct Alignment from CESAR GAAATTCAACAGCAAAGAGCTGCCCAAAAACTCATCTATACCTTTAACCAAGTAAAACCACAAACCATTCCCTATACACCAag agagagtgggcttgcctcgtgtcattttgcgctttctctgtctgttccagGAAATTCAACAGCAAAGAGCCGCCCAAAAACTTATCTATACCTTTAACCAAGTGAAACCACAATCCATCCCCTACACACCAaggtgggtaaagagttagattaaagtgcatataataacgaagagtgatacct Alignment from Spaln_aa2Genome GAAATTCAACAGCAAAGAGCTGCCCAAAAACTCATCTATACCTTTAACCAAGTAAAACCACAAACCATTCCCTATACACCAAG agagagtgggcttgcctcgtgtcattttgcgctttctctgtctgttccagGAAATTCAACAGCAAAGAGCCGCCCAAAAACTTATCTATACCTTTAACCAAGTGAAACCACAATCCATCCCCTACACACCAAGgtgggtaaagagttagattaaagtgcatataataacgaagagtgatacct Alignment from Spaln_nt2Genome GAAATTCAACAGCAAAGAGCTGCCCAAAAACTCATCTATACCTTTAACCAAGTAAAACCACAAACCATTCCCTATACACCAAG agagagtgggcttgcctcgtgtcattttgcgctttctctgtctgttccagGAAATTCAACAGCAAAGAGCCGCCCAAAAACTTATCTATACCTTTAACCAAGTGAAACCACAATCCATCCCCTACACACCAAGgtgggtaaagagttagattaaagtgcatataataacgaagagtgatacct Alignment from Pairagon GAAATTCAACAGCAAAGAGCTGCCCAAAAACTCATCTATACCTTTAACCAAGTAAAACCACAAACCATTCCCTATACACCAAG agagagtgggcttgcctcgtgtcattttgcgctttctctgtctgttccagGAAATTCAACAGCAAAGAGCCGCCCAAAAACTTATCTATACCTTTAACCAAGTGAAACCACAATCCATCCCCTACACACCAAGgtgggtaaagagttagattaaagtgcatataataacgaagagtgatacct Alignment from Exonerate_protein2genome GAAATTCAACAGCAAAGAGCTGCCCAAAAACTCATCTATACCTTTAACCAAGTAAAACCACAAACCATTCCCTATACACCAAG agagagtgggcttgcctcgtgtcattttgcgctttctctgtctgttccagGAAATTCAACAGCAAAGAGCCGCCCAAAAACTTATCTATACCTTTAACCAAGTGAAACCACAATCCATCCCCTACACACCAAGgtgggtaaagagttagattaaagtgcatataataacgaagagtgatacct Alignment from Exonerate_coding2genome GAAATTCAACAGCAAAGAGCTGCCCAAAAACTCATCTATACCTTTAACCAAGTAAAACCACAAACCATTCCCTATACACCAAG agagagtgggcttgcctcgtgtcattttgcgctttctctgtctgttccagGAAATTCAACAGCAAAGAGCCGCCCAAAAACTTATCTATACCTTTAACCAAGTGAAACCACAATCCATCCCCTACACACCAAGgtgggtaaagagttagattaaagtgcatataataacgaagagtgatacct Alignment from GeneWise GAAATTCAACAGCAAAGAGCTGCCCAAAAACTCATCTATACCTTTAACCAAGTAAAACCACAAACCATTCCCTATACACCAAG agagagtgggcttgcctcgtgtcattttgcgctttctctgtctgttccagGAAATTCAACAGCAAAGAGCCGCCCAAAAACTTATCTATACCTTTAACCAAGTGAAACCACAATCCATCCCCTACACACCAAGgtgggtaaagagttagattaaagtgcatataataacgaagagtgatacct #### Trpm6_ID4510_37 --> 2 - 2 Original Alignment gtGTTGGAGAAAATTTGACAGATCCGTCTGTTATAAAACCGGAAGACAAAca aaagtgggcggtcagaacttgaaaagcagtttgtatcttgcttgcttcaggtGTCGGAGAGAACTTGACAGATCCATCAGTTATAAAGCCAGAGGACAAAcagtaagcctgcttttagccaattgttgtatagcatagcccattgtacgttc Alignment from CESAR gtGTTGGAGAAAATTTGACAGATCCGTCTGTTATAAAACCGGAAGACAAAca aaagtgggcggtcagaacttgaaaagcagtttgtatcttgcttgcttcaggtGTCGGAGAGAACTTGACAGATCCATCAGTTATAAAGCCAGAGGACAAAcagtaagcctgcttttagccaattgttgtatagcatagcccattgtacgttc Alignment from Spaln_aa2Genome GTGTTGGAGAAAATTTGACAGATCCGTCTGTTATAAAACCGGAAGACAAACA aaagtgggcggtcagaacttgaaaagcagtttgtatcttgcttgcttcagGTGTCGGAGAGAACTTGACAGATCCATCAGTTATAAAGCCAGAGGACAAACAgtaagcctgcttttagccaattgttgtatagcatagcccattgtacgttc Alignment from Spaln_nt2Genome GTGTTGGAGAAAATTTGACAGATCCGTCTGTTATAAAACCGGAAGACAAACA aaagtgggcggtcagaacttgaaaagcagtttgtatcttgcttgcttcagGTGTCGGAGAGAACTTGACAGATCCATCAGTTATAAAGCCAGAGGACAAACAgtaagcctgcttttagccaattgttgtatagcatagcccattgtacgttc Alignment from Pairagon GTGTTGGAGAAAATTTGACAGATCCGTCTGTTATAAAACCGGAAGACAAACA aaagtgggcggtcagaacttgaaaagcagtttgtatcttgcttgcttcagGTGTCGGAGAGAACTTGACAGATCCATCAGTTATAAAGCCAGAGGACAAACAgtaagcctgcttttagccaattgttgtatagcatagcccattgtacgttc Alignment from Exonerate_protein2genome GTGTTGGAGAAAATTTGACAGATCCGTCTGTTATAAAACCGGAAGACAAACA aaagtgggcggtcagaacttgaaaagcagtttgtatcttgcttgcttcagGTGTCGGAGAGAACTTGACAGATCCATCAGTTATAAAGCCAGAGGACAAACAgtaagcctgcttttagccaattgttgtatagcatagcccattgtacgttc Alignment from Exonerate_coding2genome aaagtgggcggtcagaacttgaaaagcagtttgtatcttgcttgcttcaggtgtcggagagaacttgacagatccatcagttataaagccagaggacaaacagtaagcctgcttttagccaattgttgtatagcatagcccattgtacgttc Alignment from GeneWise GTGTTGGAGAAAATTTGACAGATCCGTCTGTTATAAAACCGGAAGACAAACA aaagtgggcggtcagaacttgaaaagcagtttgtatcttgcttgcttcagGTGTCGGAGAGAACTTGACAGATCCATCAGTTATAAAGCCAGAGGACAAACAgtaagcctgcttttagccaattgttgtatagcatagcccattgtacgttc #### Trpt1_ID1979_2 --> 0 - 1 Original Alignment GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTg acctgcaggacctaagtgtgcccgtgcctgactctgtttgtgttttgtagGACCGAAATGTGCAGCTGTCTAAAGCCCTAGCCTATGCACTTCACCATGGAGGTTCAGATCAGGGACTTCCCATGCAAGCTggtaagtaaataagattggacagcaaaactgcattgggcctacaatccatt Alignment from CESAR GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTg acctgcaggacctaagtgtgcccgtgcctgactctgtttgtgttttgtagGACCGAAATGTGCAGCTGTCTAAAGCCCTAGCCTATGCACTTCACCATGGAGGTTCAGATCAGGGACTTCCCATGCAAGCTggtaagtaaataagattggacagcaaaactgcattgggcctacaatccatt Alignment from Spaln_aa2Genome GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTG acctgcaggacctaagtgtgcccgtgcctgactctgtttgtgttttgtagGACCGAAATGTGCAGCTGTCTAAAGCCCTAGCCTATGCACTTCACCATGGAGGTTCAGATCAGGGACTTCCCATGCAAGCTGgtaagtaaataagattggacagcaaaactgcattgggcctacaatccatt Alignment from Spaln_nt2Genome GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTG acctgcaggacctaagtgtgcccgtgcctgactctgtttgtgttttgtagGACCGAAATGTGCAGCTGTCTAAAGCCCTAGCCTATGCACTTCACCATGGAGGTTCAGATCAGGGACTTCCCATGCAAGCTGgtaagtaaataagattggacagcaaaactgcattgggcctacaatccatt Alignment from Pairagon GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTG acctgcaggacctaagtgtgcccgtgcctgactctgtttgtgttttgtagGACCGAAATGTGCAGCTGTCTAAAGCCCTAGCCTATGCACTTCACCATGGAGGTTCAGATCAGGGACTTCCCATGCAAGCTGgtaagtaaataagattggacagcaaaactgcattgggcctacaatccatt Alignment from Exonerate_protein2genome GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTG acctgcaggacctaagtgtgcccgtgcctgactctgtttgtgttttgtagGACCGAAATGTGCAGCTGTCTAAAGCCCTAGCCTATGCACTTCACCATGGAGGTTCAGATCAGGGACTTCCCATGCAAGCTGgtaagtaaataagattggacagcaaaactgcattgggcctacaatccatt Alignment from Exonerate_coding2genome GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTG acctgcaggacctaagtgtgcccgtgcctgactctgtttgtgttttgtagGACCGAAATGTGCAGCTGTCTAAAGCCCTAGCCTATGCACTTCACCATGGAGGTTCAGATCAGGGACTTCCCATGCAAGCTGgtaagtaaataagattggacagcaaaactgcattgggcctacaatccatt Alignment from GeneWise GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTG acctgcaggacctaagtgtgcccgtgcctgactctgtttgtgttttgtagGACCGAAATGTGCAGCTGTCTAAAGCCCTAGCCTATGCACTTCACCATGGAGGTTCAGATCAGGGACTTCCCATGCAAGCTGgtaagtaaataagattggacagcaaaactgcattgggcctacaatccatt #### Tut1_ID2552_5 --> 0 - 2 Original Alignment CCAGACCCAAAGGCTCCAAAGGTTCCAGAGACTTCATCCTTGGACTCAGCCCTTGCTTCTTCCCTGGATCCTCAGGCGCTGGCCTGCACCCCAGCTTCTCCTCTAGACTCA---CTGTCTCCAACTTCTGTTCAAGAGTCTGAGTCCCTGGACTTTGACACCCCATCTTCTCTGGCACCACAGACACCCGACTCTGCTTTGGGCTCTGACACTGTCACCTCTCCTCAGTCTCTGCCTCCAGTTTCACCACTGCAGGAGGACAGGAAAGAGGGGAAACAGGGGAAAGAGCTAGAATTAGCAGAAGAAGCCTCAAAGGACGAGAAGGAGGAGGCAGCAGCAGTGTTAGAGCTGGTGGGATCTATTCTCCGTGGCTGTGTCCCTGGAGTGTACCGAGTCCAAACTGTGCCCTCTGCCCGGCGTCCTGTGGTCAAGTTCTGTCATCGGCCTTCAGGTCTTCATGGAGATGTATCCCTCAGTAACcg tcacggataccacactggtatatggtacaactagatcaatgtcccctcagCCAGACTCAAAGGCTCCAGAAGTCCCAAAGACTTTATCCCTGGACTCTGCA------TCCTCCCTGGCTCCTCAATCCCTGGCCTGCACCCCAGCT---CCCCTTGACCCTTCCATACCCCCCACTTCAGTACAAGAATCTGGTTCCTTGGACTTTGACACTCCATCTTCCCTGGCAGCACAGACACCTGGC---TCATTGGGCTCTGACACGGTCACGTCACTTGAGTCTTTCCCCCCCGTCTCACCACTGCAAGAGGATAGGAAGGAGGGAAAACAGGAGAAGAGGTTAGCAGTAGTAAAAGAGGCTTTCAAGGATGAGAAAGAGAAGACAGCAGCCGTGCTAGCACTGGTGGGATTAATTCTTCATGGCTGTATACCTGGAGTTTACCAGGTCCATACTGTCCCATCTGCACACTGTTCGGTTGTGAAATCCTGTCATCAGCCCACTGGACTTCATGGAGATGTATCCCTCAGCAATcggtacatttgcatgggacgtgaatctccagagctgtagcctggaaattacc Alignment from CESAR CCAGACCCAAAGGCTCCAAAGGTTCCAGAGACTTCATCCTTGGACTCAGCCCTTGCTTCTTCCCTGGATCCTCAGGCGCTGGCCTGCACCCCAGCTTCTCCTCTAGAC---TCACTGTCTCCAACTTCTGTTCAAGAGTCTGAGTCCCTGGACTTTGACACCCCATCTTCTCTGGCACCACAGACACCCGACTCTGCTTTGGGCTCTGACACTGTCACCTCTCCTCAGTCTCTGCCTCCAGTTTCACCACTGCAGGAGGACAGGAAAGAGGGGAAACAGGGGAAAGAGCTAGAATTAGCAGAAGAAGCCTCAAAGGACGAGAAGGAGGAGGCAGCAGCAGTGTTAGAGCTGGTGGGATCTATTCTCCGTGGCTGTGTCCCTGGAGTGTACCGAGTCCAAACTGTGCCCTCTGCCCGGCGTCCTGTGGTCAAGTTCTGTCATCGGCCTTCAGGTCTTCATGGAGATGTATCCCTCAGTAACcg tcacggataccacactggtatatggtacaactagatcaatgtcccctcagCCAGACTCAAAGGCTCCAGAAGTCCCAAAGACTTTATCCCTGGACTCT------GCATCCTCCCTGGCTCCTCAATCCCTGGCCTGCACCCCAGCT---CCCCTTGACCCTTCCATACCCCCCACTTCAGTACAAGAATCTGGTTCCTTGGACTTTGACACTCCATCTTCCCTGGCAGCACAGACACCTGGCTCA---TTGGGCTCTGACACGGTCACGTCACTTGAGTCTTTCCCCCCCGTCTCACCACTGCAAGAGGATAGGAAGGAGGGAAAACAGGAGAAGAGGTTAGCAGTAGTAAAAGAGGCTTTCAAGGATGAGAAAGAGAAGACAGCAGCCGTGCTAGCACTGGTGGGATTAATTCTTCATGGCTGTATACCTGGAGTTTACCAGGTCCATACTGTCCCATCTGCACACTGTTCGGTTGTGAAATCCTGTCATCAGCCCACTGGACTTCATGGAGATGTATCCCTCAGCAATcggtacatttgcatgggacgtgaatctccagagctgtagcctggaaattacc Alignment from Spaln_aa2Genome CCAGACCCAAAGGCTCCAAAGGTTCCAGAGACTTCATCCTTGGACTCAGCCCTTGCTTCTTCCCTGGATCCTCAGGCGCTGGCCTGCACCCCAGCTTCTCCTCTAGACTCACTGTCTCCAACTTCTGTTCAAGAGTCTGAGTCCCTGGACTTTGACACCCCATCTTCTCTGGCACCACAGACACCCGACTCTGCTTTGGGCTCTGACACTGTCACCTCTCCTCAGTCTCTGCCTCCAGTTTCACCACTGCAGGAGGACAGGAAAGAGGGGAAACAGGGGAAAGAGCTAGAATTAGCAGAAGAAGCCTCAAAGGACGAGAAGGAGGAGGCAGCAGCAGTGTTAGAGCTGGTGGGATCTATTCTCCGTGGCTGTGTCCCTGGAGTGTACCGAGTCCAAACTGTGCCCTCTGCCCGGCGTCCTGTGGTCAAGTTCTGTCATCGGCCTTCAGGTCTTCATGGAGATGTATCCCTCAGTAACCG tcacggataccacactggtatatggtacaactagatcaatgtcccctcagCCAGACTCAAAGGCTCCAGAAGTCCCAAAGACTTTATCCCTGGACTCT------GCATCCTCCCTGGCTCCTCAATCCCTGGCCTGCACCCCAGCTCCCCTTGACCCTTCCATACCCCCCACTTCAGTACAAGAATCTGGTTCCTTGGACTTTGACACTCCATCTTCCCTGGCAGCACAGACACCTGGCTCA---TTGGGCTCTGACACGGTCACGTCACTTGAGTCTTTCCCCCCCGTCTCACCACTGCAAGAGGATAGGAAGGAGGGAAAACAGGAGAAGAGGTTAGCAGTAGTAAAAGAGGCTTTCAAGGATGAGAAAGAGAAGACAGCAGCCGTGCTAGCACTGGTGGGATTAATTCTTCATGGCTGTATACCTGGAGTTTACCAGGTCCATACTGTCCCATCTGCACACTGTTCGGTTGTGAAATCCTGTCATCAGCCCACTGGACTTCATGGAGATGTATCCCTCAGCAATCGgtacatttgcatgggacgtgaatctccagagctgtagcctggaaattacc Alignment from Spaln_nt2Genome CCAGACCCAAAGGCTCCAAAGGTTCCAGAGACTTCATCCTTGGACTCAGCCCTTGCTTCTTCCCTGGATCCTCAGGCGCTGGCCTGCACCCCAGCTTCTCCTCTAGACTCACTGTCTCCAACTTCTGTTCAAGAGTCTGAGTCCCTGGACTTTGACACCCCATCTTCTCTGGCACCACAGACACCCGACTCTGCTTTGGGCTCTGACACTGTCACCTCTCCTCAGTCTCTGCCTCCAGTTTCACCACTGCAGGAGGACAGGAAAGAGGGGAAACAGGGGAAAGAGCTAGAATTAGCAGAAGAAGCCTCAAAGGACGAGAAGGAGGAGGCAGCAGCAGTGTTAGAGCTGGTGGGATCTATTCTCCGTGGCTGTGTCCCTGGAGTGTACCGAGTCCAAACTGTGCCCTCTGCCCGGCGTCCTGTGGTCAAGTTCTGTCATCGGCCTTCAGGTCTTCATGGAGATGTATCCCTCAGTAACCG tcacggataccacactggtatatggtacaactagatcaatgtcccctcagCCAGACTCAAAGGCTCCAGAAGTCCCAAAGACTTTATCCCTGGACTC------TGCATCCTCCCTGGCTCCTCAATCCCTGGCCTGCACCCCAGCTCCCCTTGACCCTTCCATACCCCCCACTTCAGTACAAGAATCTGGTTCCTTGGACTTTGACACTCCATCTTCCCTGGCAGCACAGACACCTGGCT---CATTGGGCTCTGACACGGTCACGTCACTTGAGTCTTTCCCCCCCGTCTCACCACTGCAAGAGGATAGGAAGGAGGGAAAACAGGAGAAGAGGTTAGCAGTAGTAAAAGAGGCTTTCAAGGATGAGAAAGAGAAGACAGCAGCCGTGCTAGCACTGGTGGGATTAATTCTTCATGGCTGTATACCTGGAGTTTACCAGGTCCATACTGTCCCATCTGCACACTGTTCGGTTGTGAAATCCTGTCATCAGCCCACTGGACTTCATGGAGATGTATCCCTCAGCAATCGgtacatttgcatgggacgtgaatctccagagctgtagcctggaaattacc Alignment from Pairagon CCAGACCCAAAGGCTCCAAAGGTTCCAGAGACTTCATCCTTGGACTCAGCCCTTGCTTCTTCCCTGGATCCTCAGGCGCTGGCCTGCACCCCAGCTTC----------------TCCTCTAGACTCACTGTCTCCAACTTCTGTTCAAGAGTCTGAGTCCCTGGACTTTGACACCCCATCTTCTCTGGCACCACAGACACCCGACTCTGCTTTGGGCTCTGACACTGTCACCTCTCCTCAGTCTCTGCCTCCAGTTTCACCACTGCAGGAGGACAGGAAAGAGGGGAAACAGGGGAAAGAGCTAGAATTAGCAGAAGAAGCCTCAAAGGACGAGAAGGAGGAGGCAGCAGCAGTGTTAGAGCTGGTGGGATCTATTCTCCGTGGCTGTGTCCCTGGAGTGTACCGAGTCCAAACTGTGCCCTCTGCCCGGCGTCCTGTGGTCAAGTTCTGTCATCGGCCTTCAGGTCTTCATGGAGATGTATCCCTCAGTAACCG tcacggataccacactggtatatggtacaactagatcaatgtcccctcagCCAGACTCAAAGGCTCCAGAAGTCCCAAAGACTTTATCCCTGGACTC------TGCATCCTCCCTGGCTCCTCAATCCCTGGCCTGCACCCCAGCTCCCCTTGACCCTTCCATACCC----------------CCCACTTCAGTACAAGAATCTGGTTCCTTGGACTTTGACACTCCATCTTCCCTGGCAGCACAGACACCTGGCT---CATTGGGCTCTGACACGGTCACGTCACTTGAGTCTTTCCCCCCCGTCTCACCACTGCAAGAGGATAGGAAGGAGGGAAAACAGGAGAAGAGGTTAGCAGTAGTAAAAGAGGCTTTCAAGGATGAGAAAGAGAAGACAGCAGCCGTGCTAGCACTGGTGGGATTAATTCTTCATGGCTGTATACCTGGAGTTTACCAGGTCCATACTGTCCCATCTGCACACTGTTCGGTTGTGAAATCCTGTCATCAGCCCACTGGACTTCATGGAGATGTATCCCTCAGCAATCGgtacatttgcatgggacgtgaatctccagagctgtagcctggaaattacc Alignment from Exonerate_protein2genome CCAGACCCAAAGGCTCCAAAGGTTCCAGAGACTTCATCCTTGGACTCAGCCCTTGCTTCTTCCCTGGATCCTCAGGCGCTGGCCTGCACCCCAGCTTCTCCTCTAGACTCACTGTCTCCAACTTCTGTTCAAGAGTCTGAGTCCCTGGACTTTGACACCCCATCTTCTCTGGCACCACAGACACCCGACTCTGCTTTGGGCTCTGACACTGTCACCTCTCCTCAGTCTCTGCCTCCAGTTTCACCACTGCAGGAGGACAGGAAAGAGGGGAAACAGGGGAAAGAGCTAGAATTAGCAGAAGAAGCCTCAAAGGACGAGAAGGAGGAGGCAGCAGCAGTGTTAGAGCTGGTGGGATCTATTCTCCGTGGCTGTGTCCCTGGAGTGTACCGAGTCCAAACTGTGCCCTCTGCCCGGCGTCCTGTGGTCAAGTTCTGTCATCGGCCTTCAGGTCTTCATGGAGATGTATCCCTCAGTAACCG tcacggataccacactggtatatggtacaactagatcaatgtcccctcagCCAGACTCAAAGGCTCCAGAAGTCCCAAAGACTTTATCCCTGGACTCT------GCATCCTCCCTGGCTCCTCAATCCCTGGCCTGCACCCCAGCTCCCCTTGACCCTTCCATACCCCCCACTTCAGTACAAGAATCTGGTTCCTTGGACTTTGACACTCCATCTTCCCTGGCAGCACAGACACCTGGCTCA---TTGGGCTCTGACACGGTCACGTCACTTGAGTCTTTCCCCCCCGTCTCACCACTGCAAGAGGATAGGAAGGAGGGAAAACAGGAGAAGAGGTTAGCAGTAGTAAAAGAGGCTTTCAAGGATGAGAAAGAGAAGACAGCAGCCGTGCTAGCACTGGTGGGATTAATTCTTCATGGCTGTATACCTGGAGTTTACCAGGTCCATACTGTCCCATCTGCACACTGTTCGGTTGTGAAATCCTGTCATCAGCCCACTGGACTTCATGGAGATGTATCCCTCAGCAATCGgtacatttgcatgggacgtgaatctccagagctgtagcctggaaattacc Alignment from Exonerate_coding2genome CCAGACCCAAAGGCTCCAAAGGTTCCAGAGACTTCATCCTTGGACTCAGCCCTTGCTTCTTCCCTGGATCCTCAGGCGCTGGCCTGCACCCCAGCTTCTCCTCTAGACTCACTGTCTCCAACTTCTGTTCAAGAGTCTGAGTCCCTGGACTTTGACACCCCATCTTCTCTGGCACCACAGACACCCGACTCTGCTTTGGGCTCTGACACTGTCACCTCTCCTCAGTCTCTGCCTCCAGTTTCACCACTGCAGGAGGACAGGAAAGAGGGGAAACAGGGGAAAGAGCTAGAATTAGCAGAAGAAGCCTCAAAGGACGAGAAGGAGGAGGCAGCAGCAGTGTTAGAGCTGGTGGGATCTATTCTCCGTGGCTGTGTCCCTGGAGTGTACCGAGTCCAAACTGTGCCCTCTGCCCGGCGTCCTGTGGTCAAGTTCTGTCATCGGCCTTCAGGTCTTCATGGAGATGTATCCCTCAGTAACCG tcacggataccacactggtatatggtacaactagatcaatgtcccctcagCCAGACTCAAAGGCTCCAGAAGTCCCAAAGACTTTATCCCTGGACTCT------GCATCCTCCCTGGCTCCTCAATCCCTGGCCTGCACCCCAGCTCCCCTTGACCCTTCCATACCCCCCACTTCAGTACAAGAATCTGGTTCCTTGGACTTTGACACTCCATCTTCCCTGGCAGCACAGACACCTGGCTCA---TTGGGCTCTGACACGGTCACGTCACTTGAGTCTTTCCCCCCCGTCTCACCACTGCAAGAGGATAGGAAGGAGGGAAAACAGGAGAAGAGGTTAGCAGTAGTAAAAGAGGCTTTCAAGGATGAGAAAGAGAAGACAGCAGCCGTGCTAGCACTGGTGGGATTAATTCTTCATGGCTGTATACCTGGAGTTTACCAGGTCCATACTGTCCCATCTGCACACTGTTCGGTTGTGAAATCCTGTCATCAGCCCACTGGACTTCATGGAGATGTATCCCTCAGCAATCGgtacatttgcatgggacgtgaatctccagagctgtagcctggaaattacc Alignment from GeneWise CCAGACCCAAAGGCTCCAAAGGTTCCAGAGACTTCATCCTTGGACTCAGCCCTTGCTTCTTCCCTGGATCCTCAGGCGCTGGCCTGCACCCCAGCTTCTCCTCTAGAC---TCACTGTCTCCAACTTCTGTTCAAGAGTCTGAGTCCCTGGACTTTGACACCCCATCTTCTCTGGCACCACAGACACCCGACTCTGCTTTGGGCTCTGACACTGTCACCTCTCCTCAGTCTCTGCCTCCAGTTTCACCACTGCAGGAGGACAGGAAAGAGGGGAAACAGGGGAAAGAGCTAGAATTAGCAGAAGAAGCCTCAAAGGACGAGAAGGAGGAGGCAGCAGCAGTGTTAGAGCTGGTGGGATCTATTCTCCGTGGCTGTGTCCCTGGAGTGTACCGAGTCCAAACTGTGCCCTCTGCCCGGCGTCCTGTGGTCAAGTTCTGTCATCGGCCTTCAGGTCTTCATGGAGATGTATCCCTCAGTAACCG tcacggataccacactggtatatggtacaactagatcaatgtcccctcagCCAGACTCAAAGGCTCCAGAAGTCCCAAAGACTTTATCCCTGGACTCTGCA------TCCTCCCTGGCTCCTCAATCCCTGGCCTGCACCCCAGCT---CCCCTTGACCCTTCCATACCCCCCACTTCAGTACAAGAATCTGGTTCCTTGGACTTTGACACTCCATCTTCCCTGGCAGCACAGACACCTGGCTCA---TTGGGCTCTGACACGGTCACGTCACTTGAGTCTTTCCCCCCCGTCTCACCACTGCAAGAGGATAGGAAGGAGGGAAAACAGGAGAAGAGGTTAGCAGTAGTAAAAGAGGCTTTCAAGGATGAGAAAGAGAAGACAGCAGCCGTGCTAGCACTGGTGGGATTAATTCTTCATGGCTGTATACCTGGAGTTTACCAGGTCCATACTGTCCCATCTGCACACTGTTCGGTTGTGAAATCCTGTCATCAGCCCACTGGACTTCATGGAGATGTATCCCTCAGCAATCGgtacatttgcatgggacgtgaatctccagagctgtagcctggaaattacc #### Ubtd1_ID8362_2 --> 2 - 1 Original Alignment gtCGCAATGAGCCCTTGAAGAAGGAGCGGCTCAAGTGGAAGAGTGACTATCCCATGACTGATGGGCAGCTGCGGAGCAAACGAGATGAGTTCTGGGACACAGCACCTGCCTTTGAGGGCCGCAAGGAGATCTGGGATGCCCTCAAGGCTGCTGCCTATGCTGCTGAAGCTAATGACCATGAGCTGGCTCAGGCCATCCTGGATGGAGCCAGCATCACCCTGCCTCATg tgtggggccatctccttggactcccccttgtcttttgtgatttatgttaggtTGCAATGAACCTTCAAAGAGGGAACAGCTGGAATGGAAGGGCGACTATCCAATGACTGATGGTCAATTGTGGAGTAAAAGGGACGAGTTCTGGGACACAGCACCTGCATTTGAGGGGCGCAAAGAGGTTTGGGATGCTCTTAAGGCTGTTGCTTATGCTGCAGAAGCTAATGACCATGAGCTTGCAGAAGCAATCCTAGATGGTGACAGCATAACTTTGCCACACagtgggtagttcacttggtgattactccttaactggaatggcaaatctcaa Alignment from CESAR gtCGCAATGAGCCCTTGAAGAAGGAGCGGCTCAAGTGGAAGAGTGACTATCCCATGACTGATGGGCAGCTGCGGAGCAAACGAGATGAGTTCTGGGACACAGCACCTGCCTTTGAGGGCCGCAAGGAGATCTGGGATGCCCTCAAGGCTGCTGCCTATGCTGCTGAAGCTAATGACCATGAGCTGGCTCAGGCCATCCTGGATGGAGCCAGCATCACCCTGCCTCATg tgtggggccatctccttggactcccccttgtcttttgtgatttatgttaggtTGCAATGAACCTTCAAAGAGGGAACAGCTGGAATGGAAGGGCGACTATCCAATGACTGATGGTCAATTGTGGAGTAAAAGGGACGAGTTCTGGGACACAGCACCTGCATTTGAGGGGCGCAAAGAGGTTTGGGATGCTCTTAAGGCTGTTGCTTATGCTGCAGAAGCTAATGACCATGAGCTTGCAGAAGCAATCCTAGATGGTGACAGCATAACTTTGCCACACagtgggtagttcacttggtgattactccttaactggaatggcaaatctcaa Alignment from Spaln_aa2Genome GTCGCAATGAGCCCTTGAAGAAGGAGCGGCTCAAGTGGAAGAGTGACTATCCCATGACTGATGGGCAGCTGCGGAGCAAACGAGATGAGTTCTGGGACACAGCACCTGCCTTTGAGGGCCGCAAGGAGATCTGGGATGCCCTCAAGGCTGCTGCCTATGCTGCTGAAGCTAATGACCATGAGCTGGCTCAGGCCATCCTGGATGGAGCCAGCATCACCCTGCCTCATG tgtggggccatctccttggactcccccttgtcttttgtgatttatgttagGTTGCAATGAACCTTCAAAGAGGGAACAGCTGGAATGGAAGGGCGACTATCCAATGACTGATGGTCAATTGTGGAGTAAAAGGGACGAGTTCTGGGACACAGCACCTGCATTTGAGGGGCGCAAAGAGGTTTGGGATGCTCTTAAGGCTGTTGCTTATGCTGCAGAAGCTAATGACCATGAGCTTGCAGAAGCAATCCTAGATGGTGACAGCATAACTTTGCCACACAgtgggtagttcacttggtgattactccttaactggaatggcaaatctcaa Alignment from Spaln_nt2Genome GTCGCAATGAGCCCTTGAAGAAGGAGCGGCTCAAGTGGAAGAGTGACTATCCCATGACTGATGGGCAGCTGCGGAGCAAACGAGATGAGTTCTGGGACACAGCACCTGCCTTTGAGGGCCGCAAGGAGATCTGGGATGCCCTCAAGGCTGCTGCCTATGCTGCTGAAGCTAATGACCATGAGCTGGCTCAGGCCATCCTGGATGGAGCCAGCATCACCCTGCCTCATG tgtggggccatctccttggactcccccttgtcttttgtgatttatgttagGTTGCAATGAACCTTCAAAGAGGGAACAGCTGGAATGGAAGGGCGACTATCCAATGACTGATGGTCAATTGTGGAGTAAAAGGGACGAGTTCTGGGACACAGCACCTGCATTTGAGGGGCGCAAAGAGGTTTGGGATGCTCTTAAGGCTGTTGCTTATGCTGCAGAAGCTAATGACCATGAGCTTGCAGAAGCAATCCTAGATGGTGACAGCATAACTTTGCCACACAgtgggtagttcacttggtgattactccttaactggaatggcaaatctcaa Alignment from Pairagon GTCGCAATGAGCCCTTGAAGAAGGAGCGGCTCAAGTGGAAGAGTGACTATCCCATGACTGATGGGCAGCTGCGGAGCAAACGAGATGAGTTCTGGGACACAGCACCTGCCTTTGAGGGCCGCAAGGAGATCTGGGATGCCCTCAAGGCTGCTGCCTATGCTGCTGAAGCTAATGACCATGAGCTGGCTCAGGCCATCCTGGATGGAGCCAGCATCACCCTGCCTCATG tgtggggccatctccttggactcccccttgtcttttgtgatttatgttagGTTGCAATGAACCTTCAAAGAGGGAACAGCTGGAATGGAAGGGCGACTATCCAATGACTGATGGTCAATTGTGGAGTAAAAGGGACGAGTTCTGGGACACAGCACCTGCATTTGAGGGGCGCAAAGAGGTTTGGGATGCTCTTAAGGCTGTTGCTTATGCTGCAGAAGCTAATGACCATGAGCTTGCAGAAGCAATCCTAGATGGTGACAGCATAACTTTGCCACACAgtgggtagttcacttggtgattactccttaactggaatggcaaatctcaa Alignment from Exonerate_protein2genome GTCGCAATGAGCCCTTGAAGAAGGAGCGGCTCAAGTGGAAGAGTGACTATCCCATGACTGATGGGCAGCTGCGGAGCAAACGAGATGAGTTCTGGGACACAGCACCTGCCTTTGAGGGCCGCAAGGAGATCTGGGATGCCCTCAAGGCTGCTGCCTATGCTGCTGAAGCTAATGACCATGAGCTGGCTCAGGCCATCCTGGATGGAGCCAGCATCACCCTGCCTCATG tgtggggccatctccttggactcccccttgtcttttgtgatttatgttagGTTGCAATGAACCTTCAAAGAGGGAACAGCTGGAATGGAAGGGCGACTATCCAATGACTGATGGTCAATTGTGGAGTAAAAGGGACGAGTTCTGGGACACAGCACCTGCATTTGAGGGGCGCAAAGAGGTTTGGGATGCTCTTAAGGCTGTTGCTTATGCTGCAGAAGCTAATGACCATGAGCTTGCAGAAGCAATCCTAGATGGTGACAGCATAACTTTGCCACACAgtgggtagttcacttggtgattactccttaactggaatggcaaatctcaa Alignment from Exonerate_coding2genome GTCGCAATGAGCCCTTGAAGAAGGAGCGGCTCAAGTGGAAGAGTGACTATCCCATGACTGATGGGCAGCTGCGGAGCAAACGAGATGAGTTCTGGGACACAGCACCTGCCTTTGAGGGCCGCAAGGAGATCTGGGATGCCCTCAAGGCTGCTGCCTATGCTGCTGAAGCTAATGACCATGAGCTGGCTCAGGCCATCCTGGATGGAGCCAGCATCACCCTGCCTCATG tgtggggccatctccttggactcccccttgtcttttgtgatttatgttagGTTGCAATGAACCTTCAAAGAGGGAACAGCTGGAATGGAAGGGCGACTATCCAATGACTGATGGTCAATTGTGGAGTAAAAGGGACGAGTTCTGGGACACAGCACCTGCATTTGAGGGGCGCAAAGAGGTTTGGGATGCTCTTAAGGCTGTTGCTTATGCTGCAGAAGCTAATGACCATGAGCTTGCAGAAGCAATCCTAGATGGTGACAGCATAACTTTGCCACACAgtgggtagttcacttggtgattactccttaactggaatggcaaatctcaa Alignment from GeneWise GTCGCAATGAGCCCTTGAAGAAGGAGCGGCTCAAGTGGAAGAGTGACTATCCCATGACTGATGGGCAGCTGCGGAGCAAACGAGATGAGTTCTGGGACACAGCACCTGCCTTTGAGGGCCGCAAGGAGATCTGGGATGCCCTCAAGGCTGCTGCCTATGCTGCTGAAGCTAATGACCATGAGCTGGCTCAGGCCATCCTGGATGGAGCCAGCATCACCCTGCCTCATG tgtggggccatctccttggactcccccttgtcttttgtgatttatgttagGTTGCAATGAACCTTCAAAGAGGGAACAGCTGGAATGGAAGGGCGACTATCCAATGACTGATGGTCAATTGTGGAGTAAAAGGGACGAGTTCTGGGACACAGCACCTGCATTTGAGGGGCGCAAAGAGGTTTGGGATGCTCTTAAGGCTGTTGCTTATGCTGCAGAAGCTAATGACCATGAGCTTGCAGAAGCAATCCTAGATGGTGACAGCATAACTTTGCCACACAgtgggtagttcacttggtgattactccttaactggaatggcaaatctcaa #### Ubxn1_ID2443_7 --> 0 - 0 Original Alignment TATGGTGGTAGTGTGGGTTCTCGGTCATCCCCACCAGCAACAGACCCAGGTCCTGTTCCTTCTTCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAG ttatagacctgatgaataaatagggcctcatgtctgcactgtctccacagTGTGGTGGCAGTGTGGGTTCACGAACATCCCCACCAGCAATGGACCCCGGTCCTGTACCATCTCCTCCAAGCCAAGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTACACAAgtgagctctccaggggactatcctcctcgggactttcatgtaacttttta Alignment from CESAR TATGGTGGTAGTGTGGGTTCTCGGTCATCCCCACCAGCAACAGACCCAGGTCCTGTTCCTTCTTCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAG ttatagacctgatgaataaatagggcctcatgtctgcactgtctccacagTGTGGTGGCAGTGTGGGTTCACGAACATCCCCACCAGCAATGGACCCCGGTCCTGTACCATCTCCTCCAAGCCAAGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTACACAAgtgagctctccaggggactatcctcctcgggactttcatgtaacttttta Alignment from Spaln_aa2Genome TATGGTGGTAGTGTGGGTTCTCGGTCATCCCCACCAGCAACAGACCCAGGTCCTGTTCCTTCTTCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAG ttatagacctgatgaataaatagggcctcatgtctgcactgtctccacagTGTGGTGGCAGTGTGGGTTCACGAACATCCCCACCAGCAATGGACCCCGGTCCTGTACCATCTCCTCCAAGCCAAGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTACACAAgtgagctctccaggggactatcctcctcgggactttcatgtaacttttta Alignment from Spaln_nt2Genome TATGGTGGTAGTGTGGGTTCTCGGTCATCCCCACCAGCAACAGACCCAGGTCCTGTTCCTTCTTCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAG ttatagacctgatgaataaatagggcctcatgtctgcactgtctccacagTGTGGTGGCAGTGTGGGTTCACGAACATCCCCACCAGCAATGGACCCCGGTCCTGTACCATCTCCTCCAAGCCAAGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTACACAAgtgagctctccaggggactatcctcctcgggactttcatgtaacttttta Alignment from Pairagon TATGGTGGTAGTGTGGGTTCTCGGTCATCCCCACCAGCAACAGACCCAGGTCCTGTTCCTTCTTCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAG ttatagacctgatgaataaatagggcctcatgtctgcactgtctccacagTGTGGTGGCAGTGTGGGTTCACGAACATCCCCACCAGCAATGGACCCCGGTCCTGTACCATCTCCTCCAAGCCAAGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTACACAAgtgagctctccaggggactatcctcctcgggactttcatgtaacttttta Alignment from Exonerate_protein2genome TATGGTGGTAGTGTGGGTTCTCGGTCATCCCCACCAGCAACAGACCCAGGTCCTGTTCCTTCTTCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAG ttatagacctgatgaataaatagggcctcatgtctgcactgtctccacagTGTGGTGGCAGTGTGGGTTCACGAACATCCCCACCAGCAATGGACCCCGGTCCTGTACCATCTCCTCCAAGCCAAGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTACACAAgtgagctctccaggggactatcctcctcgggactttcatgtaacttttta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TATGGTGGTAGTGTGGGTTCTCGGTCATCCCCACCAGCAACAGACCCAGGTCCTGTTCCTTCTTCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAG ttatagacctgatgaataaatagggcctcatgtctgcactgtctccacagTGTGGTGGCAGTGTGGGTTCACGAACATCCCCACCAGCAATGGACCCCGGTCCTGTACCATCTCCTCCAAGCCAAGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTACACAAgtgagctctccaggggactatcctcctcgggactttcatgtaacttttta #### Uhrf2_ID6371_2 --> 0 - 0 Original Alignment TTGGAAAATGGATATACTTTATTTGACTACGACGTTGGACTGAATGATATAATTCAGCTGCTAGTTCGTCCAGACTCCAGTCTTCCTAGCACATCTAAGCAGAATGATGCTCAGGTTAAACCCTCTTCT---CATAATCCGCCTAAAGTAAAGAAAACAGCAAGAGGGGGATCTTCCAGTCAGCCATCTACATCAGCTCGCACTTGTCTTATTGACCCTGGCTTTGGACTATATAAG ttcttaatcccaacaatgccaaggacatttttgttttgtttctgtcccagCTTGAAAATGGGTATACATTATTTGATTACGATGTAGGGCTTAATCACATTCTTCACGTGCTAGTTCGCCCAGATTCTAGCATTCCTAGTACATCCAAGCAGAATGATGCTCAAGTTAAACCCTCTTCACACCAAAATCCACCAAAGGCGAAGAAGGCAGTAAGGGGAGGATCCTCCAGCCAGCCGTCAACA---GCCCGCACATGTATAATTGACCCTGGCTCTTCACTCTATAGAgtaaagagtcccagaagaaactaattacaaagttaagggttctctggggg Alignment from CESAR TTGGAAAATGGATATACTTTATTTGACTACGACGTTGGACTGAATGATATAATTCAGCTGCTAGTTCGTCCAGACTCCAGTCTTCCTAGCACATCTAAGCAGAATGATGCTCAGGTTAAACCCTCTTCTCAT---AATCCGCCTAAAGTAAAGAAAACAGCAAGAGGGGGATCTTCCAGTCAGCCATCTACATCAGCTCGCACTTGTCTTATTGACCCTGGCTTTGGACTATATAAG ttcttaatcccaacaatgccaaggacatttttgttttgtttctgtcccagCTTGAAAATGGGTATACATTATTTGATTACGATGTAGGGCTTAATCACATTCTTCACGTGCTAGTTCGCCCAGATTCTAGCATTCCTAGTACATCCAAGCAGAATGATGCTCAAGTTAAACCCTCTTCACACCAAAATCCACCAAAGGCGAAGAAGGCAGTAAGGGGAGGATCCTCCAGCCAGCCGTCAACA---GCCCGCACATGTATAATTGACCCTGGCTCTTCACTCTATAGAgtaaagagtcccagaagaaactaattacaaagttaagggttctctggggg Alignment from Spaln_aa2Genome TTGGAAAATGGATATACTTTATTTGACTACGACGTTGGACTGAATGATATAATTCAGCTGCTAGTTCGTCCAGACTCCAGTCTTCCTAGCACATCTAAGCAGAATGATGCTCAGGTTAAACCCTCTTCTCATAATCCGCCTAAAGTAAAGAAAACAGCAAGAGGGGGATCTTCCAGTCAGCCATCTACATCAGCTCGCACTTGTCTTATTGACCCTGGCTTTGGACTATATAAG ttcttaatcccaacaatgccaaggacatttttgttttgtttctgtcccagCTTGAAAATGGGTATACATTATTTGATTACGATGTAGGGCTTAATCACATTCTTCACGTGCTAGTTCGCCCAGATTCTAGCATTCCTAGTACATCCAAGCAGAATGATGCTCAAGTTAAACCCTCTTCACACCAAAATCCACCAAAGGCGAAGAAGGCAGTAAGGGGAGGATCCTCCAGCCAGCCGTCAACAGCCCGCACATGTATAATTGACCCTGGCTCTTCACTCTATAGAgtaaagagtcccagaagaaactaattacaaagttaagggttctctggggg Alignment from Spaln_nt2Genome TTGGAAAATGGATATACTTTATTTGACTACGACGTTGGACTGAATGATATAATTCAGCTGCTAGTTCGTCCAGACTCCAGTCTTCCTAGCACATCTAAGCAGAATGATGCTCAGGTTAAACCCTCTTCTCAT---AATCCGCCTAAAGTAAAGAAAACAGCAAGAGGGGGATCTTCCAGTCAGCCATCTACATCAGCTCGCACTTGTCTTATTGACCCTGGCTTTGGACTATATAAG ttcttaatcccaacaatgccaaggacatttttgttttgtttctgtcccagCTTGAAAATGGGTATACATTATTTGATTACGATGTAGGGCTTAATCACATTCTTCACGTGCTAGTTCGCCCAGATTCTAGCATTCCTAGTACATCCAAGCAGAATGATGCTCAAGTTAAACCCTCTTCACACCAAAATCCACCAAAGGCGAAGAAGGCAGTAAGGGGAGGATCCTCCAGCCAGCCGT---CAACAGCCCGCACATGTATAATTGACCCTGGCTCTTCACTCTATAGAgtaaagagtcccagaagaaactaattacaaagttaagggttctctggggg Alignment from Pairagon TTGGAAAATGGATATACTTTATTTGACTACGACGTTGGACTGAATGATATAATTCAGCTGCTAGTTCGTCCAGACTCCAGTCTTCCTAGCACATCTAAGCAGAATGATGCTCAGGTTAAACCCTCTTC---TCATAATCCGCCTAAAGTAAAGAAAACAGCAAGAGGGGGATCTTCCAGTCAGCCATCTACATCAGCTCGCACTTGTCTTATTGACCCTGGCTTTGGACTATATAAG ttcttaatcccaacaatgccaaggacatttttgttttgtttctgtcccagCTTGAAAATGGGTATACATTATTTGATTACGATGTAGGGCTTAATCACATTCTTCACGTGCTAGTTCGCCCAGATTCTAGCATTCCTAGTACATCCAAGCAGAATGATGCTCAAGTTAAACCCTCTTCACACCAAAATCCACCAAAGGCGAAGAAGGCAGTAAGGGGAGGATCCTCCAGCCAGCCGT---CAACAGCCCGCACATGTATAATTGACCCTGGCTCTTCACTCTATAGAgtaaagagtcccagaagaaactaattacaaagttaagggttctctggggg Alignment from Exonerate_protein2genome TTGGAAAATGGATATACTTTATTTGACTACGACGTTGGACTGAATGATATAATTCAGCTGCTAGTTCGTCCAGACTCCAGTCTTCCTAGCACATCTAAGCAGAATGATGCTCAGGTTAAACCCTCTTCTCAT---AATCCGCCTAAAGTAAAGAAAACAGCAAGAGGGGGATCTTCCAGTCAGCCATCTACATCAGCTCGCACTTGTCTTATTGACCCTGGCTTTGGACTATATAAG ttcttaatcccaacaatgccaaggacatttttgttttgtttctgtcccagCTTGAAAATGGGTATACATTATTTGATTACGATGTAGGGCTTAATCACATTCTTCACGTGCTAGTTCGCCCAGATTCTAGCATTCCTAGTACATCCAAGCAGAATGATGCTCAAGTTAAACCCTCTTCACACCAAAATCCACCAAAGGCGAAGAAGGCAGTAAGGGGAGGATCCTCCAGCCAGCCGTCAACA---GCCCGCACATGTATAATTGACCCTGGCTCTTCACTCTATAGAgtaaagagtcccagaagaaactaattacaaagttaagggttctctggggg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TTGGAAAATGGATATACTTTATTTGACTACGACGTTGGACTGAATGATATAATTCAGCTGCTAGTTCGTCCAGACTCCAGTCTTCCTAGCACATCTAAGCAGAATGATGCTCAGGTTAAACCCTCTTCTCAT---AATCCGCCTAAAGTAAAGAAAACAGCAAGAGGGGGATCTTCCAGTCAGCCATCTACATCAGCTCGCACTTGTCTTATTGACCCTGGCTTTGGACTATATAAG ttcttaatcccaacaatgccaaggacatttttgttttgtttctgtcccagCTTGAAAATGGGTATACATTATTTGATTACGATGTAGGGCTTAATCACATTCTTCACGTGCTAGTTCGCCCAGATTCTAGCATTCCTAGTACATCCAAGCAGAATGATGCTCAAGTTAAACCCTCTTCACACCAAAATCCACCAAAGGCGAAGAAGGCAGTAAGGGGAGGATCCTCCAGCCAGCCGTCAACA---GCCCGCACATGTATAATTGACCCTGGCTCTTCACTCTATAGAgtaaagagtcccagaagaaactaattacaaagttaagggttctctggggg #### Uhrf2_ID6372_3 --> 0 - 2 Original Alignment GTAAATGAATTGGTGGATGCCAGAGATGTCGGCCTTGGTGCTTGGTTTGAAGCACATATACATAGTGTTACTAGAGCTTCTGATGGACATTCACGTGGCAAAACTCCACTGAAGAATGGCAGTTCTTATAAAAGGACTAATGGAAATGTAAATCATAATTCCAAAGAGAACACAAATAAATTGGACAATGTACCCTCTACGTCTAATTCAGACTCAGTTGCTGCTGATGAAGACGTTATTTATCATATCGAGTATGATga tcagggtcctttagccctcccatatttcttgttttttttttccttcacagGTAAATGAATTAGTGGATGCCAGAGATGTTGGCCTGGGTGCATGGTTTGAAGCTCATATTCACAGTGTTACTAGAGCCTCTGATGGGCACTCACGTGGTAAAATTCCCTTAAAAAATGGAAGTTCTTATAAGAGAACTAATGGAATCATAAACCACAATTCCAAAGAGAACAAAAACAAACTAGATAATGTACCCTCTACATCAAATTCAGACTCAGTTGCTGCTGATGAAGATGTTATTTATCAGATCAAGTATGACgagtgaggacagttagtctatttagtttgtgtgtctggataacttgaggtca Alignment from CESAR GTAAATGAATTGGTGGATGCCAGAGATGTCGGCCTTGGTGCTTGGTTTGAAGCACATATACATAGTGTTACTAGAGCTTCTGATGGACATTCACGTGGCAAAACTCCACTGAAGAATGGCAGTTCTTATAAAAGGACTAATGGAAATGTAAATCATAATTCCAAAGAGAACACAAATAAATTGGACAATGTACCCTCTACGTCTAATTCAGACTCAGTTGCTGCTGATGAAGACGTTATTTATCATATCGAGTATGATga tcagggtcctttagccctcccatatttcttgttttttttttccttcacagGTAAATGAATTAGTGGATGCCAGAGATGTTGGCCTGGGTGCATGGTTTGAAGCTCATATTCACAGTGTTACTAGAGCCTCTGATGGGCACTCACGTGGTAAAATTCCCTTAAAAAATGGAAGTTCTTATAAGAGAACTAATGGAATCATAAACCACAATTCCAAAGAGAACAAAAACAAACTAGATAATGTACCCTCTACATCAAATTCAGACTCAGTTGCTGCTGATGAAGATGTTATTTATCAGATCAAGTATGACgagtgaggacagttagtctatttagtttgtgtgtctggataacttgaggtca Alignment from Spaln_aa2Genome GTAAATGAATTGGTGGATGCCAGAGATGTCGGCCTTGGTGCTTGGTTTGAAGCACATATACATAGTGTTACTAGAGCTTCTGATGGACATTCACGTGGCAAAACTCCACTGAAGAATGGCAGTTCTTATAAAAGGACTAATGGAAATGTAAATCATAATTCCAAAGAGAACACAAATAAATTGGACAATGTACCCTCTACGTCTAATTCAGACTCAGTTGCTGCTGATGAAGACGTTATTTATCATATCGAGTATGATGA tcagggtcctttagccctcccatatttcttgttttttttttccttcacagGTAAATGAATTAGTGGATGCCAGAGATGTTGGCCTGGGTGCATGGTTTGAAGCTCATATTCACAGTGTTACTAGAGCCTCTGATGGGCACTCACGTGGTAAAATTCCCTTAAAAAATGGAAGTTCTTATAAGAGAACTAATGGAATCATAAACCACAATTCCAAAGAGAACAAAAACAAACTAGATAATGTACCCTCTACATCAAATTCAGACTCAGTTGCTGCTGATGAAGATGTTATTTATCAGATCAAGTATGACGAgtgaggacagttagtctatttagtttgtgtgtctggataacttgaggtca Alignment from Spaln_nt2Genome GTAAATGAATTGGTGGATGCCAGAGATGTCGGCCTTGGTGCTTGGTTTGAAGCACATATACATAGTGTTACTAGAGCTTCTGATGGACATTCACGTGGCAAAACTCCACTGAAGAATGGCAGTTCTTATAAAAGGACTAATGGAAATGTAAATCATAATTCCAAAGAGAACACAAATAAATTGGACAATGTACCCTCTACGTCTAATTCAGACTCAGTTGCTGCTGATGAAGACGTTATTTATCATATCGAGTATGATGA tcagggtcctttagccctcccatatttcttgttttttttttccttcacagGTAAATGAATTAGTGGATGCCAGAGATGTTGGCCTGGGTGCATGGTTTGAAGCTCATATTCACAGTGTTACTAGAGCCTCTGATGGGCACTCACGTGGTAAAATTCCCTTAAAAAATGGAAGTTCTTATAAGAGAACTAATGGAATCATAAACCACAATTCCAAAGAGAACAAAAACAAACTAGATAATGTACCCTCTACATCAAATTCAGACTCAGTTGCTGCTGATGAAGATGTTATTTATCAGATCAAGTATGACGAgtgaggacagttagtctatttagtttgtgtgtctggataacttgaggtca Alignment from Pairagon GTAAATGAATTGGTGGATGCCAGAGATGTCGGCCTTGGTGCTTGGTTTGAAGCACATATACATAGTGTTACTAGAGCTTCTGATGGACATTCACGTGGCAAAACTCCACTGAAGAATGGCAGTTCTTATAAAAGGACTAATGGAAATGTAAATCATAATTCCAAAGAGAACACAAATAAATTGGACAATGTACCCTCTACGTCTAATTCAGACTCAGTTGCTGCTGATGAAGACGTTATTTATCATATCGAGTATGATGA tcagggtcctttagccctcccatatttcttgttttttttttccttcacagGTAAATGAATTAGTGGATGCCAGAGATGTTGGCCTGGGTGCATGGTTTGAAGCTCATATTCACAGTGTTACTAGAGCCTCTGATGGGCACTCACGTGGTAAAATTCCCTTAAAAAATGGAAGTTCTTATAAGAGAACTAATGGAATCATAAACCACAATTCCAAAGAGAACAAAAACAAACTAGATAATGTACCCTCTACATCAAATTCAGACTCAGTTGCTGCTGATGAAGATGTTATTTATCAGATCAAGTATGACGAgtgaggacagttagtctatttagtttgtgtgtctggataacttgaggtca Alignment from Exonerate_protein2genome GTAAATGAATTGGTGGATGCCAGAGATGTCGGCCTTGGTGCTTGGTTTGAAGCACATATACATAGTGTTACTAGAGCTTCTGATGGACATTCACGTGGCAAAACTCCACTGAAGAATGGCAGTTCTTATAAAAGGACTAATGGAAATGTAAATCATAATTCCAAAGAGAACACAAATAAATTGGACAATGTACCCTCTACGTCTAATTCAGACTCAGTTGCTGCTGATGAAGACGTTATTTATCATATCGAGTATGATGA tcagggtcctttagccctcccatatttcttgttttttttttccttcacagGTAAATGAATTAGTGGATGCCAGAGATGTTGGCCTGGGTGCATGGTTTGAAGCTCATATTCACAGTGTTACTAGAGCCTCTGATGGGCACTCACGTGGTAAAATTCCCTTAAAAAATGGAAGTTCTTATAAGAGAACTAATGGAATCATAAACCACAATTCCAAAGAGAACAAAAACAAACTAGATAATGTACCCTCTACATCAAATTCAGACTCAGTTGCTGCTGATGAAGATGTTATTTATCAGATCAAGTATGACGAgtgaggacagttagtctatttagtttgtgtgtctggataacttgaggtca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTAAATGAATTGGTGGATGCCAGAGATGTCGGCCTTGGTGCTTGGTTTGAAGCACATATACATAGTGTTACTAGAGCTTCTGATGGACATTCACGTGGCAAAACTCCACTGAAGAATGGCAGTTCTTATAAAAGGACTAATGGAAATGTAAATCATAATTCCAAAGAGAACACAAATAAATTGGACAATGTACCCTCTACGTCTAATTCAGACTCAGTTGCTGCTGATGAAGACGTTATTTATCATATCGAGTATGATGA tcagggtcctttagccctcccatatttcttgttttttttttccttcacagGTAAATGAATTAGTGGATGCCAGAGATGTTGGCCTGGGTGCATGGTTTGAAGCTCATATTCACAGTGTTACTAGAGCCTCTGATGGGCACTCACGTGGTAAAATTCCCTTAAAAAATGGAAGTTCTTATAAGAGAACTAATGGAATCATAAACCACAATTCCAAAGAGAACAAAAACAAACTAGATAATGTACCCTCTACATCAAATTCAGACTCAGTTGCTGCTGATGAAGATGTTATTTATCAGATCAAGTATGACGAgtgaggacagttagtctatttagtttgtgtgtctggataacttgaggtca #### Uhrf2_ID6374_5 --> 1 - 1 Original Alignment gGGCTCTGAAGGCACATTAAATGACTGCCGAGTGATGTCTGTAGATGAAATCTTCAAGATTGAGAAGCCTGGAGCC---CATCCCATTTCCTTTGCAGATGGAAAGTTTTTAa ctagctggtagttcagaaggattcactttctgtcctctgctccctggcagtGGCTCTGAGGGCACC---AATGACTGCCAAGTGATGTTTGTGGATGAAATCTTCAAGATTGGTAAACCTGGAGTACAGCATCCTATTTCTTATGCAGATGGCAAGTTCTTAagtatttgtgttgctgtttcctctaggtccttcgactgttgtgcatgggca Alignment from CESAR gGGCTCTGAAGGCACATTAAATGACTGCCGAGTGATGTCTGTAGATGAAATCTTCAAGATTGAGAAGCCTGGAGCC---CATCCCATTTCCTTTGCAGATGGAAAGTTTTTAa ctagctggtagttcagaaggattcactttctgtcctctgctccctggcagtGGCTCTGAGGGCACC---AATGACTGCCAAGTGATGTTTGTGGATGAAATCTTCAAGATTGGTAAACCTGGAGTACAGCATCCTATTTCTTATGCAGATGGCAAGTTCTTAagtatttgtgttgctgtttcctctaggtccttcgactgttgtgcatgggca Alignment from Spaln_aa2Genome GGGCTCTGAAGGCACATTAAATGACTGCCGAGTGATGTCTGTAGATGAAATCTTCAAGATTGAGAAGCCTGGAGCC---CATCCCATTTCCTTTGCAGATGGAAAGTTTTTAA ctagctggtagttcagaaggattcactttctgtcctctgctccctggcagTGGCTCTGAGGGCACC---AATGACTGCCAAGTGATGTTTGTGGATGAAATCTTCAAGATTGGTAAACCTGGAGTACAGCATCCTATTTCTTATGCAGATGGCAAGTTCTTAAgtatttgtgttgctgtttcctctaggtccttcgactgttgtgcatgggca Alignment from Spaln_nt2Genome GGGCTCTGAAGGCACATTAAATGACTGCCGAGTGATGTCTGTAGATGAAATCTTCAAGATTGAGAAGCCTGGAGCCCA---TCCCATTTCCTTTGCAGATGGAAAGTTTTTAA ctagctggtagttcagaaggattcactttctgtcctctgctccctggcagTGGCTCTGAGGGCAC---CAATGACTGCCAAGTGATGTTTGTGGATGAAATCTTCAAGATTGGTAAACCTGGAGTACAGCATCCTATTTCTTATGCAGATGGCAAGTTCTTAAgtatttgtgttgctgtttcctctaggtccttcgactgttgtgcatgggca Alignment from Pairagon GGGCTCTGAAGGCACATTAAATGACTGCCGAGTGATGTCTGTAGATGAAATCTTCAAGATTGAGAAGCCTGGAGC---CCATCCCATTTCCTTTGCAGATGGAAAGTTTTTAA ctagctggtagttcagaaggattcactttctgtcctctgctccctggcagTGGCTCTGAGGGCAC---CAATGACTGCCAAGTGATGTTTGTGGATGAAATCTTCAAGATTGGTAAACCTGGAGTACAGCATCCTATTTCTTATGCAGATGGCAAGTTCTTAAgtatttgtgttgctgtttcctctaggtccttcgactgttgtgcatgggca Alignment from Exonerate_protein2genome GGGCTCTGAAGGCACATTAAATGACTGCCGAGTGATGTCTGTAGATGAAATCTTCAAGATTGAGAAGCCTGGAGCC---CATCCCATTTCCTTTGCAGATGGAAAGTTTTTAA ctagctggtagttcagaaggattcactttctgtcctctgctccctggcagTGGCTCTGAGGGCACC---AATGACTGCCAAGTGATGTTTGTGGATGAAATCTTCAAGATTGGTAAACCTGGAGTACAGCATCCTATTTCTTATGCAGATGGCAAGTTCTTAAgtatttgtgttgctgtttcctctaggtccttcgactgttgtgcatgggca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGGCTCTGAAGGCACATTAAATGACTGCCGAGTGATGTCTGTAGATGAAATCTTCAAGATTGAGAAGCCTGGAGCC---CATCCCATTTCCTTTGCAGATGGAAAGTTTTTAA ctagctggtagttcagaaggattcactttctgtcctctgctccctggcagTGGCTCTGAGGGCACC---AATGACTGCCAAGTGATGTTTGTGGATGAAATCTTCAAGATTGGTAAACCTGGAGTACAGCATCCTATTTCTTATGCAGATGGCAAGTTCTTAAgtatttgtgttgctgtttcctctaggtccttcgactgttgtgcatgggca #### Uhrf2_ID6375_6 --> 2 - 2 Original Alignment ggAAAAATGACCCTGAATGTGACCTGTGTGGTGGAGACCCAGATAAGACCTGTCACATGTGTTCGTGTCATAAGTGTGGAGAGAAGCGGGACCCCAACATGCAGCTGCTGTGTGACGAGTGCAATATGGCCTATCACATTTACTGCCTGAGCCCACCTCTGGACAAAGTCCCGGAAGAGGAATACtg gtacaatggtggtacaagagtttgattcctctgcttgttgcccgctgcagggAGAAATGACACTGAATGTGACCTCTGTGGTGGAGACCCGGATAAGACCTGTCATACTTGTTCATGTCACAAGTGTGGAGAG---CAAGGTCCCAACATGTGGCTGCTCTGTGAT---GGTAATATGACCTACCACATTTACTGCCTTAGCTCACCATTGGACAAAATTCCTGATGAGGAACATtggtgagttaattcaaggacagtggaggatcagcacttgattcaaccacctg Alignment from CESAR ggAAAAATGACCCTGAATGTGACCTGTGTGGTGGAGACCCAGATAAGACCTGTCACATGTGTTCGTGTCATAAGTGTGGAGAGAAGCGGGACCCCAACATGCAGCTGCTGTGTGACGAGTGCAATATGGCCTATCACATTTACTGCCTGAGCCCACCTCTGGACAAAGTCCCGGAAGAGGAATACtg gtacaatggtggtacaagagtttgattcctctgcttgttgcccgctgcagggAGAAATGACACTGAATGTGACCTCTGTGGTGGAGACCCGGATAAGACCTGTCATACTTGTTCATGTCACAAGTGTGGAGAG---CAAGGTCCCAACATGTGGCTGCTCTGTGAT---GGTAATATGACCTACCACATTTACTGCCTTAGCTCACCATTGGACAAAATTCCTGATGAGGAACATtggtgagttaattcaaggacagtggaggatcagcacttgattcaaccacctg Alignment from Spaln_aa2Genome GGAAAAATGACCCTGAATGTGACCTGTGTGGTGGAGACCCAGATAAGACCTGTCACATGTGTTCGTGTCATAAGTGTGGAGAGAAGCGGGACCCCAACATGCAGCTGCTGTGTGACGAGTGCAATATGGCCTATCACATTTACTGCCTGAGCCCACCTCTGGACAAAGTCCCGGAAGAGGAATACTG gtacaatggtggtacaagagtttgattcctctgcttgttgcccgctgcagGGAGAAATGACACTGAATGTGACCTCTGTGGTGGAGACCCGGATAAGACCTGTCATACTTGTTCATGTCACAAGTGTGGAGAGCAA---GGTCCCAACATGTGGCTGCTCTGTGATGGT---AATATGACCTACCACATTTACTGCCTTAGCTCACCATTGGACAAAATTCCTGATGAGGAACATTGgtgagttaattcaaggacagtggaggatcagcacttgattcaaccacctg Alignment from Spaln_nt2Genome GGAAAAATGACCCTGAATGTGACCTGTGTGGTGGAGACCCAGATAAGACCTGTCACATGTGTTCGTGTCATAAGTGTGGAGAGAAGCGGGACCCCAACATGCAGCTGCTGTGTGACGAGTGCAATATGGCCTATCACATTTACTGCCTGAGCCCACCTCTGGACAAAGTCCCGGAAGAGGAATACTG gtacaatggtggtacaagagtttgattcctctgcttgttgcccgctgcagGGAGAAATGACACTGAATGTGACCTCTGTGGTGGAGACCCGGATAAGACCTGTCATACTTGTTCATGTCACAAGTGTGGAG---AGCAAGGTCCCAACATGTGGCTGCTCTGTGATG---GTAATATGACCTACCACATTTACTGCCTTAGCTCACCATTGGACAAAATTCCTGATGAGGAACATTGgtgagttaattcaaggacagtggaggatcagcacttgattcaaccacctg Alignment from Pairagon GGAAAAATGACCCTGAATGTGACCTGTGTGGTGGAGACCCAGATAAGACCTGTCACATGTGTTCGTGTCATAAGTGTGGAGAGAAGCGGGACCCCAACATGCAGCTGCTGTGTGACGAGTGCAATATGGCCTATCACATTTACTGCCTGAGCCCACCTCTGGACAAAGTCCCGGAAGAGGAATACTG gtacaatggtggtacaagagtttgattcctctgcttgttgcccgctgcagGGAGAAATGACACTGAATGTGACCTCTGTGGTGGAGACCCGGATAAGACCTGTCATACTTGTTCATGTCACAAGTGTGGAG---AGCAAGGTCCCAACATGTGGCTGCTCTGTGATG---GTAATATGACCTACCACATTTACTGCCTTAGCTCACCATTGGACAAAATTCCTGATGAGGAACATTGgtgagttaattcaaggacagtggaggatcagcacttgattcaaccacctg Alignment from Exonerate_protein2genome GGAAAAATGACCCTGAATGTGACCTGTGTGGTGGAGACCCAGATAAGACCTGTCACATGTGTTCGTGTCATAAGTGTGGAGAGAAGCGGGACCCCAACATGCAGCTGCTGTGTGACGAGTGCAATATGGCCTATCACATTTACTGCCTGAGCCCACCTCTGGACAAAGTCCCGGAAGAGGAATACTG gtacaatggtggtacaagagtttgattcctctgcttgttgcccgctgcagGGAGAAATGACACTGAATGTGACCTCTGTGGTGGAGACCCGGATAAGACCTGTCATACTTGTTCATGTCACAAGTGTGGAGAG---CAAGGTCCCAACATGTGGCTGCTCTGTGATGGT---AATATGACCTACCACATTTACTGCCTTAGCTCACCATTGGACAAAATTCCTGATGAGGAACATTGgtgagttaattcaaggacagtggaggatcagcacttgattcaaccacctg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGAAAAATGACCCTGAATGTGACCTGTGTGGTGGAGACCCAGATAAGACCTGTCACATGTGTTCGTGTCATAAGTGTGGAGAGAAGCGGGACCCCAACATGCAGCTGCTGTGTGACGAGTGCAATATGGCCTATCACATTTACTGCCTGAGCCCACCTCTGGACAAAGTCCCGGAAGAGGAATACTG gtacaatggtggtacaagagtttgattcctctgcttgttgcccgctgcagGGAGAAATGACACTGAATGTGACCTCTGTGGTGGAGACCCGGATAAGACCTGTCATACTTGTTCATGTCACAAGTGTGGAGAG---CAAGGTCCCAACATGTGGCTGCTCTGTGATGGT---AATATGACCTACCACATTTACTGCCTTAGCTCACCATTGGACAAAATTCCTGATGAGGAACATTGgtgagttaattcaaggacagtggaggatcagcacttgattcaaccacctg #### Uhrf2_ID6376_7 --> 1 - 0 Original Alignment gTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGACTCAAGCTGAGTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGGAGGGACTGGGGCAGG ctcattttcttaccagttttaatgaagtacctggcatgtccccgttccaggTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTAGTAAAGGCTGGAGAGAGGCTCAAGCTGACCAAGAAAAAATTGAAGATGCCTTCAGCTAGCACTGAGAGTCGAAGGGACTGGGGCAGGgtaagagaatccttacactattatcaccactatgtcagcagttcaaaaag Alignment from CESAR gTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGACTCAAGCTGAGTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGGAGGGACTGGGGCAGG ctcattttcttaccagttttaatgaagtacctggcatgtccccgttccaggTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTAGTAAAGGCTGGAGAGAGGCTCAAGCTGACCAAGAAAAAATTGAAGATGCCTTCAGCTAGCACTGAGAGTCGAAGGGACTGGGGCAGGgtaagagaatccttacactattatcaccactatgtcagcagttcaaaaag Alignment from Spaln_aa2Genome GTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGACTCAAGCTGAGTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGGAGGGACTGGGGCAGG ctcattttcttaccagttttaatgaagtacctggcatgtccccgttccagGTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTAGTAAAGGCTGGAGAGAGGCTCAAGCTGACCAAGAAAAAATTGAAGATGCCTTCAGCTAGCACTGAGAGTCGAAGGGACTGGGGCAGGgtaagagaatccttacactattatcaccactatgtcagcagttcaaaaag Alignment from Spaln_nt2Genome GTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGACTCAAGCTGAGTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGGAGGGACTGGGGCAGG ctcattttcttaccagttttaatgaagtacctggcatgtccccgttccagGTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTAGTAAAGGCTGGAGAGAGGCTCAAGCTGACCAAGAAAAAATTGAAGATGCCTTCAGCTAGCACTGAGAGTCGAAGGGACTGGGGCAGGgtaagagaatccttacactattatcaccactatgtcagcagttcaaaaag Alignment from Pairagon GTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGACTCAAGCTGAGTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGGAGGGACTGGGGCAGG ctcattttcttaccagttttaatgaagtacctggcatgtccccgttccagGTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTAGTAAAGGCTGGAGAGAGGCTCAAGCTGACCAAGAAAAAATTGAAGATGCCTTCAGCTAGCACTGAGAGTCGAAGGGACTGGGGCAGGgtaagagaatccttacactattatcaccactatgtcagcagttcaaaaag Alignment from Exonerate_protein2genome GTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGACTCAAGCTGAGTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGGAGGGACTGGGGCAGG ctcattttcttaccagttttaatgaagtacctggcatgtccccgttccagGTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTAGTAAAGGCTGGAGAGAGGCTCAAGCTGACCAAGAAAAAATTGAAGATGCCTTCAGCTAGCACTGAGAGTCGAAGGGACTGGGGCAGGgtaagagaatccttacactattatcaccactatgtcagcagttcaaaaag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTGGTAAAGGCTGGAGAGAGACTCAAGCTGAGTAAGAAGAAAGCGAAGATGCCCTCAGCCAGTACTGAGAGCCGGAGGGACTGGGGCAGG ctcattttcttaccagttttaatgaagtacctggcatgtccccgttccagGTATTGTCCTTCCTGTAAAACTGACTCCAGTGAGGTAGTAAAGGCTGGAGAGAGGCTCAAGCTGACCAAGAAAAAATTGAAGATGCCTTCAGCTAGCACTGAGAGTCGAAGGGACTGGGGCAGGgtaagagaatccttacactattatcaccactatgtcagcagttcaaaaag #### Uhrf2_ID6382_12 --> 0 - 0 Original Alignment GTGGTAAAATACTGGCCAGAGATTTCATCCAGCCATGGCTTCTTGGTTTGGCGTTATCTTTTAAGAAGAGATGATGTTGAACCTGCTCCTTGGACCTCAGAAGGAATCGAACGATCAAGGAGACTGTGTCTGCGATTGCAG tgaaaccccttcatggacttttatggcactttctttcttttaattttcagGTGGTAAAATACTGGCCAGAGATCTCAGCCGGCCATGGCTTCTTAGTTTGGCGTTACCTTTTAAGAAGAGATGATGTTGAACCTGCTCCCTGGACCTCAGAAGGAATCGAACAATCTAGGAGGCTGTGCTTGAGATTGCAGgtaagctcaattgggttcattgcacttttgtatgatagcttagcttgtaa Alignment from CESAR GTGGTAAAATACTGGCCAGAGATTTCATCCAGCCATGGCTTCTTGGTTTGGCGTTATCTTTTAAGAAGAGATGATGTTGAACCTGCTCCTTGGACCTCAGAAGGAATCGAACGATCAAGGAGACTGTGTCTGCGATTGCAG tgaaaccccttcatggacttttatggcactttctttcttttaattttcagGTGGTAAAATACTGGCCAGAGATCTCAGCCGGCCATGGCTTCTTAGTTTGGCGTTACCTTTTAAGAAGAGATGATGTTGAACCTGCTCCCTGGACCTCAGAAGGAATCGAACAATCTAGGAGGCTGTGCTTGAGATTGCAGgtaagctcaattgggttcattgcacttttgtatgatagcttagcttgtaa Alignment from Spaln_aa2Genome GTGGTAAAATACTGGCCAGAGATTTCATCCAGCCATGGCTTCTTGGTTTGGCGTTATCTTTTAAGAAGAGATGATGTTGAACCTGCTCCTTGGACCTCAGAAGGAATCGAACGATCAAGGAGACTGTGTCTGCGATTGCAG tgaaaccccttcatggacttttatggcactttctttcttttaattttcagGTGGTAAAATACTGGCCAGAGATCTCAGCCGGCCATGGCTTCTTAGTTTGGCGTTACCTTTTAAGAAGAGATGATGTTGAACCTGCTCCCTGGACCTCAGAAGGAATCGAACAATCTAGGAGGCTGTGCTTGAGATTGCAGgtaagctcaattgggttcattgcacttttgtatgatagcttagcttgtaa Alignment from Spaln_nt2Genome GTGGTAAAATACTGGCCAGAGATTTCATCCAGCCATGGCTTCTTGGTTTGGCGTTATCTTTTAAGAAGAGATGATGTTGAACCTGCTCCTTGGACCTCAGAAGGAATCGAACGATCAAGGAGACTGTGTCTGCGATTGCAG tgaaaccccttcatggacttttatggcactttctttcttttaattttcagGTGGTAAAATACTGGCCAGAGATCTCAGCCGGCCATGGCTTCTTAGTTTGGCGTTACCTTTTAAGAAGAGATGATGTTGAACCTGCTCCCTGGACCTCAGAAGGAATCGAACAATCTAGGAGGCTGTGCTTGAGATTGCAGgtaagctcaattgggttcattgcacttttgtatgatagcttagcttgtaa Alignment from Pairagon GTGGTAAAATACTGGCCAGAGATTTCATCCAGCCATGGCTTCTTGGTTTGGCGTTATCTTTTAAGAAGAGATGATGTTGAACCTGCTCCTTGGACCTCAGAAGGAATCGAACGATCAAGGAGACTGTGTCTGCGATTGCAG tgaaaccccttcatggacttttatggcactttctttcttttaattttcagGTGGTAAAATACTGGCCAGAGATCTCAGCCGGCCATGGCTTCTTAGTTTGGCGTTACCTTTTAAGAAGAGATGATGTTGAACCTGCTCCCTGGACCTCAGAAGGAATCGAACAATCTAGGAGGCTGTGCTTGAGATTGCAGgtaagctcaattgggttcattgcacttttgtatgatagcttagcttgtaa Alignment from Exonerate_protein2genome GTGGTAAAATACTGGCCAGAGATTTCATCCAGCCATGGCTTCTTGGTTTGGCGTTATCTTTTAAGAAGAGATGATGTTGAACCTGCTCCTTGGACCTCAGAAGGAATCGAACGATCAAGGAGACTGTGTCTGCGATTGCAG tgaaaccccttcatggacttttatggcactttctttcttttaattttcagGTGGTAAAATACTGGCCAGAGATCTCAGCCGGCCATGGCTTCTTAGTTTGGCGTTACCTTTTAAGAAGAGATGATGTTGAACCTGCTCCCTGGACCTCAGAAGGAATCGAACAATCTAGGAGGCTGTGCTTGAGATTGCAGgtaagctcaattgggttcattgcacttttgtatgatagcttagcttgtaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGGTAAAATACTGGCCAGAGATTTCATCCAGCCATGGCTTCTTGGTTTGGCGTTATCTTTTAAGAAGAGATGATGTTGAACCTGCTCCTTGGACCTCAGAAGGAATCGAACGATCAAGGAGACTGTGTCTGCGATTGCAG tgaaaccccttcatggacttttatggcactttctttcttttaattttcagGTGGTAAAATACTGGCCAGAGATCTCAGCCGGCCATGGCTTCTTAGTTTGGCGTTACCTTTTAAGAAGAGATGATGTTGAACCTGCTCCCTGGACCTCAGAAGGAATCGAACAATCTAGGAGGCTGTGCTTGAGATTGCAGgtaagctcaattgggttcattgcacttttgtatgatagcttagcttgtaa #### Uhrf2_ID6383_13 --> 0 - 1 Original Alignment TACCCAGCAGGTTACCCCTCGGAAAAGGAAGGCAAGAAGACCAAGGGGCAGTCAAAGAAGCAGGGCAGTGAGGCCACCAAAAGGCCAGCTTCAGATg ttctgtttagtctacaagtcctccctagtagactcttgcatgtgtactagTACTCAGCTGGTTACCCCTTGGAAGAGGGAGGCAAGAAGACTAAGGGGCAATCAAAGAAGCAGGGGAGTGAGGCAATCAAAAGACCAGTCTCAGATggtgagtgtttgcaatggaccattggacctgttgatgacatcctggactag Alignment from CESAR TACCCAGCAGGTTACCCCTCGGAAAAGGAAGGCAAGAAGACCAAGGGGCAGTCAAAGAAGCAGGGCAGTGAGGCCACCAAAAGGCCAGCTTCAGATg ttctgtttagtctacaagtcctccctagtagactcttgcatgtgtactagTACTCAGCTGGTTACCCCTTGGAAGAGGGAGGCAAGAAGACTAAGGGGCAATCAAAGAAGCAGGGGAGTGAGGCAATCAAAAGACCAGTCTCAGATggtgagtgtttgcaatggaccattggacctgttgatgacatcctggactag Alignment from Spaln_aa2Genome TACCCAGCAGGTTACCCCTCGGAAAAGGAAGGCAAGAAGACCAAGGGGCAGTCAAAGAAGCAGGGCAGTGAGGCCACCAAAAGGCCAGCTTCAGATG ttctgtttagtctacaagtcctccctagtagactcttgcatgtgtactagTACTCAGCTGGTTACCCCTTGGAAGAGGGAGGCAAGAAGACTAAGGGGCAATCAAAGAAGCAGGGGAGTGAGGCAATCAAAAGACCAGTCTCAGATGgtgagtgtttgcaatggaccattggacctgttgatgacatcctggactag Alignment from Spaln_nt2Genome TACCCAGCAGGTTACCCCTCGGAAAAGGAAGGCAAGAAGACCAAGGGGCAGTCAAAGAAGCAGGGCAGTGAGGCCACCAAAAGGCCAGCTTCAGATG ttctgtttagtctacaagtcctccctagtagactcttgcatgtgtactagTACTCAGCTGGTTACCCCTTGGAAGAGGGAGGCAAGAAGACTAAGGGGCAATCAAAGAAGCAGGGGAGTGAGGCAATCAAAAGACCAGTCTCAGATGgtgagtgtttgcaatggaccattggacctgttgatgacatcctggactag Alignment from Pairagon TACCCAGCAGGTTACCCCTCGGAAAAGGAAGGCAAGAAGACCAAGGGGCAGTCAAAGAAGCAGGGCAGTGAGGCCACCAAAAGGCCAGCTTCAGATG ttctgtttagtctacaagtcctccctagtagactcttgcatgtgtactagTACTCAGCTGGTTACCCCTTGGAAGAGGGAGGCAAGAAGACTAAGGGGCAATCAAAGAAGCAGGGGAGTGAGGCAATCAAAAGACCAGTCTCAGATGgtgagtgtttgcaatggaccattggacctgttgatgacatcctggactag Alignment from Exonerate_protein2genome TACCCAGCAGGTTACCCCTCGGAAAAGGAAGGCAAGAAGACCAAGGGGCAGTCAAAGAAGCAGGGCAGTGAGGCCACCAAAAGGCCAGCTTCAGATG ttctgtttagtctacaagtcctccctagtagactcttgcatgtgtactagTACTCAGCTGGTTACCCCTTGGAAGAGGGAGGCAAGAAGACTAAGGGGCAATCAAAGAAGCAGGGGAGTGAGGCAATCAAAAGACCAGTCTCAGATGgtgagtgtttgcaatggaccattggacctgttgatgacatcctggactag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TACCCAGCAGGTTACCCCTCGGAAAAGGAAGGCAAGAAGACCAAGGGGCAGTCAAAGAAGCAGGGCAGTGAGGCCACCAAAAGGCCAGCTTCAGATG ttctgtttagtctacaagtcctccctagtagactcttgcatgtgtactagTACTCAGCTGGTTACCCCTTGGAAGAGGGAGGCAAGAAGACTAAGGGGCAATCAAAGAAGCAGGGGAGTGAGGCAATCAAAAGACCAGTCTCAGATGgtgagtgtttgcaatggaccattggacctgttgatgacatcctggactag #### Vegfb_ID1956_4 --> 0 - 2 Original Alignment ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCag aagtttacctcttagcttcttgggaacataacatttctgttttccttcagATCCTCATGATCCAGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCaggtctgagacaattccaggacccatggtctggcatgtgttagggccgcatg Alignment from CESAR ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCag aagtttacctcttagcttcttgggaacataacatttctgttttccttcagATCCTCATGATCCAGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCaggtctgagacaattccaggacccatggtctggcatgtgttagggccgcatg Alignment from Spaln_aa2Genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG aagtttacctcttagcttcttgggaacataacatttctgttttccttcagATCCTCATGATCCAGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAGgtctgagacaattccaggacccatggtctggcatgtgttagggccgcatg Alignment from Spaln_nt2Genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG aagtttacctcttagcttcttgggaacataacatttctgttttccttcagATCCTCATGATCCAGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAGgtctgagacaattccaggacccatggtctggcatgtgttagggccgcatg Alignment from Pairagon ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG aagtttacctcttagcttcttgggaacataacatttctgttttccttcagATCCTCATGATCCAGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAGgtctgagacaattccaggacccatggtctggcatgtgttagggccgcatg Alignment from Exonerate_protein2genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG aagtttacctcttagcttcttgggaacataacatttctgttttccttcagATCCTCATGATCCAGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAGgtctgagacaattccaggacccatggtctggcatgtgttagggccgcatg Alignment from Exonerate_coding2genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAG aagtttacctcttagcttcttgggaacataacatttctgttttccttcagATCCTCATGATCCAGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAGgtctgagacaattccaggacccatggtctggcatgtgttagggccgcatg Alignment from GeneWise ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAGACCAAAAAAAAAGGAGAGTGCTGTGAAGCCAGACAG aagtttacctcttagcttcttgggaacataacatttctgttttccttcagATCCTCATGATCCAGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAATGTGAATGCAGGTCTGAGACAATTCCAGGACCCATGGTCTGGCATGTgttagggccgcatg #### Vegfb_ID1957_3 --> 2 - 0 Original Alignment tgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGC---TGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG agaaatgaaaaagtggaaaggtttttgggtattgtgttgtttctttgtagtgGTACCATGGATCGATGTCTATGCACGGTCTGTATGCCAACCGAGGGAGGTGGCAGCTCCACTGAGTATGAAACTTATGGGTAATATCGTCAAACAGCTGGTGCCAAGCTGTGTTGGAACTGTGCAGCGCTGTAGTGGGTGCTGCTGCCCTGATGATGGCTTGGAATGTGTGGCTGCAGAGCAACATCAAGTTCGAATGCAAgtaagtgactaatttgtatgtaagtacttggtagtatcagtctgatacgc Alignment from CESAR tgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTG---ACTGTGCAGCGCTGTGGTGGC---TGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG agaaatgaaaaagtggaaaggtttttgggtattgtgttgtttctttgtagtgGTACCATGGATCGATGTCTATGCACGGTCTGTATGCCAACCGAGGGAGGTGGCAGCTCCACTGAGTATGAAACTTATGGGTAATATCGTCAAACAGCTGGTGCCAAGCTGTGTTGGAACTGTGCAGCGCTGTAGTGGGTGCTGCTGCCCTGATGATGGCTTGGAATGTGTGGCTGCAGAGCAACATCAAGTTCGAATGCAAgtaagtgactaatttgtatgtaagtacttggtagtatcagtctgatacgc Alignment from Spaln_aa2Genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTG---ACTGTGCAGCGCTGTGGTGGC---TGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG agaaatgaaaaagtggaaaggtttttgggtattgtgttgtttctttgtagTGGTACCATGGATCGATGTCTATGCACGGTCTGTATGCCAACCGAGGGAGGTGGCAGCTCCACTGAGTATGAAACTTATGGGTAATATCGTCAAACAGCTGGTGCCAAGCTGTGTTGGAACTGTGCAGCGCTGTAGTGGGTGCTGCTGCCCTGATGATGGCTTGGAATGTGTGGCTGCAGAGCAACATCAAGTTCGAATGCAAgtaagtgactaatttgtatgtaagtacttggtagtatcagtctgatacgc Alignment from Spaln_nt2Genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTG---ACTGTGCAGCGCTGTGGTGGC---TGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG agaaatgaaaaagtggaaaggtttttgggtattgtgttgtttctttgtagTGGTACCATGGATCGATGTCTATGCACGGTCTGTATGCCAACCGAGGGAGGTGGCAGCTCCACTGAGTATGAAACTTATGGGTAATATCGTCAAACAGCTGGTGCCAAGCTGTGTTGGAACTGTGCAGCGCTGTAGTGGGTGCTGCTGCCCTGATGATGGCTTGGAATGTGTGGCTGCAGAGCAACATCAAGTTCGAATGCAAgtaagtgactaatttgtatgtaagtacttggtagtatcagtctgatacgc Alignment from Pairagon TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGT---GACTGTGCAGCGCTGTGGTG---GCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG agaaatgaaaaagtggaaaggtttttgggtattgtgttgtttctttgtagTGGTACCATGGATCGATGTCTATGCACGGTCTGTATGCCAACCGAGGGAGGTGGCAGCTCCACTGAGTATGAAACTTATGGGTAATATCGTCAAACAGCTGGTGCCAAGCTGTGTTGGAACTGTGCAGCGCTGTAGTGGGTGCTGCTGCCCTGATGATGGCTTGGAATGTGTGGCTGCAGAGCAACATCAAGTTCGAATGCAAgtaagtgactaatttgtatgtaagtacttggtagtatcagtctgatacgc Alignment from Exonerate_protein2genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTG---ACTGTGCAGCGCTGTGGTGGC---TGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG agaaatgaaaaagtggaaaggtttttgggtattgtgttgtttctttgtagTGGTACCATGGATCGATGTCTATGCACGGTCTGTATGCCAACCGAGGGAGGTGGCAGCTCCACTGAGTATGAAACTTATGGGTAATATCGTCAAACAGCTGGTGCCAAGCTGTGTTGGAACTGTGCAGCGCTGTAGTGGGTGCTGCTGCCCTGATGATGGCTTGGAATGTGTGGCTGCAGAGCAACATCAAGTTCGAATGCAAgtaagtgactaatttgtatgtaagtacttggtagtatcagtctgatacgc Alignment from Exonerate_coding2genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTG---ACTGTGCAGCGCTGTGGTGGC---TGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG agaaatgaaaaagtggaaaggtttttgggtattgtgttgtttctttgtagTGGTACCATGGATCGATGTCTATGCACGGTCTGTATGCCAACCGAGGGAGGTGGCAGCTCCACTGAGTATGAAACTTATGGGTAATATCGTCAAACAGCTGGTGCCAAGCTGTGTTGGAACTGTGCAGCGCTGTAGTGGGTGCTGCTGCCCTGATGATGGCTTGGAATGTGTGGCTGCAGAGCAACATCAAGTTCGAATGCAAgtaagtgactaatttgtatgtaagtacttggtagtatcagtctgatacgc Alignment from GeneWise TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTG---ACTGTGCAGCGCTGTGGTGGCTGCTGC---CCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG agaaatgaaaaagtggaaaggtttttgggtattgtgttgtttctttgtagTGGTACCATGGATCGATGTCTATGCACGGTCTGTATGCCAACCGAGGGAGGTGGCAGCTCCACTGAGTATGAAACTTATGGGTAATATCGTCAAACAGCTGGTGCCAAGCTGTGTTGGAACTGTGCAGCGCTGTAGTGGGTGCTGCTGCCCTGATGATGGCTTGGAATGTGTGGCTGCAGAGCAACATCAAGTTCGAATGCAAgtaagtgactaatttgtatgtaagtacttggtagtatcagtctgatacgc #### Vldlr_ID5804_4 --> 2 - 1 Original Alignment atATGAGAACATGCCGCATAAATGAAATCAGCTGTGGCGCCCGTTCTACTCAGTGTATCCCCGTGTCCTGGAGATGCGATGGTGAAAATGATTGTGACAATGGAGAAGATGAAGAAAACTGTg gtgactgggcacatgtagttttcagagcaaatataaactttgttttgtagacATGAGGACATGCTATATAAATGAAATTAGCTGTGGTGCACGTTCCGCTCAGTGTATACCTATCTCCTGGCGATGTGATGGGAAGAATGATTGTGAC---CGAGAAGAAGAGCAAAACTGTggtgagaatatatgttgaaataagccagagacactgacatatgatccatgc Alignment from CESAR atATGAGAACATGCCGCATAAATGAAATCAGCTGTGGCGCCCGTTCTACTCAGTGTATCCCCGTGTCCTGGAGATGCGATGGTGAAAATGATTGTGACAATGGAGAAGATGAAGAAAACTGTg gtgactgggcacatgtagttttcagagcaaatataaactttgttttgtagacATGAGGACATGCTATATAAATGAAATTAGCTGTGGTGCACGTTCCGCTCAGTGTATACCTATCTCCTGGCGATGTGATGGGAAGAATGATTGTGAC---CGAGAAGAAGAGCAAAACTGTggtgagaatatatgttgaaataagccagagacactgacatatgatccatgc Alignment from Spaln_aa2Genome ATATGAGAACATGCCGCATAAATGAAATCAGCTGTGGCGCCCGTTCTACTCAGTGTATCCCCGTGTCCTGGAGATGCGATGGTGAAAATGATTGTGACAATGGAGAAGATGAAGAAAACTGTG gtgactgggcacatgtagttttcagagcaaatataaactttgttttgtagACATGAGGACATGCTATATAAATGAAATTAGCTGTGGTGCACGTTCCGCTCAGTGTATACCTATCTCCTGGCGATGTGATGGGAAGAATGATTGTGAC---CGAGAAGAAGAGCAAAACTGTGgtgagaatatatgttgaaataagccagagacactgacatatgatccatgc Alignment from Spaln_nt2Genome ATATGAGAACATGCCGCATAAATGAAATCAGCTGTGGCGCCCGTTCTACTCAGTGTATCCCCGTGTCCTGGAGATGCGATGGTGAAAATGATTGTGACAATGGAGAAGATGAAGAAAACTGTG gtgactgggcacatgtagttttcagagcaaatataaactttgttttgtagACATGAGGACATGCTATATAAATGAAATTAGCTGTGGTGCACGTTCCGCTCAGTGTATACCTATCTCCTGGCGATGTGATGGGAAGAATGATTGTGAC---CGAGAAGAAGAGCAAAACTGTGgtgagaatatatgttgaaataagccagagacactgacatatgatccatgc Alignment from Pairagon ATATGAGAACATGCCGCATAAATGAAATCAGCTGTGGCGCCCGTTCTACTCAGTGTATCCCCGTGTCCTGGAGATGCGATGGTGAAAATGATTGTGACAATGGAGAAGATGAAGAAAACTGTG gtgactgggcacatgtagttttcagagcaaatataaactttgttttgtagACATGAGGACATGCTATATAAATGAAATTAGCTGTGGTGCACGTTCCGCTCAGTGTATACCTATCTCCTGGCGATGTGATGGGAAGAATGATTGTGACC---GAGAAGAAGAGCAAAACTGTGgtgagaatatatgttgaaataagccagagacactgacatatgatccatgc Alignment from Exonerate_protein2genome ATATGAGAACATGCCGCATAAATGAAATCAGCTGTGGCGCCCGTTCTACTCAGTGTATCCCCGTGTCCTGGAGATGCGATGGTGAAAATGATTGTGACAATGGAGAAGATGAAGAAAACTGTG gtgactgggcacatgtagttttcagagcaaatataaactttgttttgtagACATGAGGACATGCTATATAAATGAAATTAGCTGTGGTGCACGTTCCGCTCAGTGTATACCTATCTCCTGGCGATGTGATGGGAAGAATGATTGTGACCGA---GAAGAAGAGCAAAACTGTGgtgagaatatatgttgaaataagccagagacactgacatatgatccatgc Alignment from Exonerate_coding2genome ATATGAGAACATGCCGCATAAATGAAATCAGCTGTGGCGCCCGTTCTACTCAGTGTATCCCCGTGTCCTGGAGATGCGATGGTGAAAATGATTGTGACAATGGAGAAGATGAAGAAAACTGTG gtgactgggcacatgtagttttcagagcaaatataaactttgttttgtagACATGAGGACATGCTATATAAATGAAATTAGCTGTGGTGCACGTTCCGCTCAGTGTATACCTATCTCCTGGCGATGTGATGGGAAGAATGATTGTGACCGA---GAAGAAGAGCAAAACTGTGgtgagaatatatgttgaaataagccagagacactgacatatgatccatgc Alignment from GeneWise ATATGAGAACATGCCGCATAAATGAAATCAGCTGTGGCGCCCGTTCTACTCAGTGTATCCCCGTGTCCTGGAGATGCGATGGTGAAAATGATTGTGACAATGGAGAAGATGAAGAAAACTGTG gtgactgggcacatgtagttttcagagcaaatataaactttgttttgtagACATGAGGACATGCTATATAAATGAAATTAGCTGTGGTGCACGTTCCGCTCAGTGTATACCTATCTCCTGGCGATGTGATGGGAAGAATGATTGTGACCGA---GAAGAAGAGCAAAACTGTGgtgagaatatatgttgaaataagccagagacactgacatatgatccatgc #### Vldlr_ID5807_6 --> 2 - 1 Original Alignment ctTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACg cttcacttctgatgtctctagcagtctctatttttatgtttgtcttaaagcaTCTCAAACTTGCCGACCTGACCACTTTGAATGTGAGGATGGTACTTGCATCCATGGTAGCAGACAATGCAATGGGATCCAGGCTTGTGTTGATGGGTCTGATGAACTAAACTGTAGAAACagtgagcgtctctttgagattgacaggtctgttcctttgccagaagagtga Alignment from CESAR ctTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACg cttcacttctgatgtctctagcagtctctatttttatgtttgtcttaaagcaTCTCAAACTTGCCGACCTGACCACTTTGAATGTGAGGATGGTACTTGCATCCATGGTAGCAGACAATGCAATGGGATCCAGGCTTGTGTTGATGGGTCTGATGAACTAAACTGTAGAAACagtgagcgtctctttgagattgacaggtctgttcctttgccagaagagtga Alignment from Spaln_aa2Genome CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACG cttcacttctgatgtctctagcagtctctatttttatgtttgtcttaaagCATCTCAAACTTGCCGACCTGACCACTTTGAATGTGAGGATGGTACTTGCATCCATGGTAGCAGACAATGCAATGGGATCCAGGCTTGTGTTGATGGGTCTGATGAACTAAACTGTAGAAACAgtgagcgtctctttgagattgacaggtctgttcctttgccagaagagtga Alignment from Spaln_nt2Genome CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACG cttcacttctgatgtctctagcagtctctatttttatgtttgtcttaaagCATCTCAAACTTGCCGACCTGACCACTTTGAATGTGAGGATGGTACTTGCATCCATGGTAGCAGACAATGCAATGGGATCCAGGCTTGTGTTGATGGGTCTGATGAACTAAACTGTAGAAACAgtgagcgtctctttgagattgacaggtctgttcctttgccagaagagtga Alignment from Pairagon CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACG cttcacttctgatgtctctagcagtctctatttttatgtttgtcttaaagCATCTCAAACTTGCCGACCTGACCACTTTGAATGTGAGGATGGTACTTGCATCCATGGTAGCAGACAATGCAATGGGATCCAGGCTTGTGTTGATGGGTCTGATGAACTAAACTGTAGAAACAgtgagcgtctctttgagattgacaggtctgttcctttgccagaagagtga Alignment from Exonerate_protein2genome CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACG cttcacttctgatgtctctagcagtctctatttttatgtttgtcttaaagCATCTCAAACTTGCCGACCTGACCACTTTGAATGTGAGGATGGTACTTGCATCCATGGTAGCAGACAATGCAATGGGATCCAGGCTTGTGTTGATGGGTCTGATGAACTAAACTGTAGAAACAgtgagcgtctctttgagattgacaggtctgttcctttgccagaagagtga Alignment from Exonerate_coding2genome CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACG cttcacttctgatgtctctagcagtctctatttttatgtttgtcttaaagCATCTCAAACTTGCCGACCTGACCACTTTGAATGTGAGGATGGTACTTGCATCCATGGTAGCAGACAATGCAATGGGATCCAGGCTTGTGTTGATGGGTCTGATGAACTAAACTGTAGAAACAgtgagcgtctctttgagattgacaggtctgttcctttgccagaagagtga Alignment from GeneWise CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACG cttcacttctgatgtctctagcagtctctatttttatgtttgtcttaaagCATCTCAAACTTGCCGACCTGACCACTTTGAATGTGAGGATGGTACTTGCATCCATGGTAGCAGACAATGCAATGGGATCCAGGCTTGTGTTGATGGGTCTGATGAACTAAACTGTAGAAACAgtgagcgtctctttgagattgacaggtctgttcctttgccagaagagtga #### Vps13a_ID4053_70 --> 1 - 0 Original Alignment tGGCGTGTTGTTCGTAACAAAGGGAACATTTGGACAGCTTACATGTGAGTGGCAGTACACTTTTGATGAATTCACCAAAGAGCCGTTCATTGTCCATGGGAGAAGACTGCGCATTGAAGCCAAG ttagaggtttgtttattcacaggctccactggctgtcattcttctcctagtGGGGTACTGTTTGTAATAGAGGGAGCATTCAGACAACTTACATGTGAGTGGCAATACACTTAC---GAATTTACTAAAGAGCCATTCATTGTCCGTGGGAGAAGACTGCGTATTGAGGCTAAAgtaattgcacttagttccatgtctcagttatagatctcgcacataaagcc Alignment from CESAR tGGCGTGTTGTTCGTAACAAAGGGAACATTTGGACAGCTTACATGTGAGTGGCAGTACACTTTTGATGAATTCACCAAAGAGCCGTTCATTGTCCATGGGAGAAGACTGCGCATTGAAGCCAAG ttagaggtttgtttattcacaggctccactggctgtcattcttctcctagtGGGGTACTGTTTGTAATAGAGGGAGCATTCAGACAACTTACATGTGAGTGGCAATACACTTAC---GAATTTACTAAAGAGCCATTCATTGTCCGTGGGAGAAGACTGCGTATTGAGGCTAAAgtaattgcacttagttccatgtctcagttatagatctcgcacataaagcc Alignment from Spaln_aa2Genome TGGCGTGTTGTTCGTAACAAAGGGAACATTTGGACAGCTTACATGTGAGTGGCAGTACACTTTTGATGAATTCACCAAAGAGCCGTTCATTGTCCATGGGAGAAGACTGCGCATTGAAGCCAAG ttagaggtttgtttattcacaggctccactggctgtcattcttctcctagTGGGGTACTGTTTGTAATAGAGGGAGCATTCAGACAACTTACATGTGAGTGGCAATACACTTAC---GAATTTACTAAAGAGCCATTCATTGTCCGTGGGAGAAGACTGCGTATTGAGGCTAAAgtaattgcacttagttccatgtctcagttatagatctcgcacataaagcc Alignment from Spaln_nt2Genome TGGCGTGTTGTTCGTAACAAAGGGAACATTTGGACAGCTTACATGTGAGTGGCAGTACACTTTTGATGAATTCACCAAAGAGCCGTTCATTGTCCATGGGAGAAGACTGCGCATTGAAGCCAAG ttagaggtttgtttattcacaggctccactggctgtcattcttctcctagTGGGGTACTGTTTGTAATAGAGGGAGCATTCAGACAACTTACATGTGAGTGGCAATACACTT---ACGAATTTACTAAAGAGCCATTCATTGTCCGTGGGAGAAGACTGCGTATTGAGGCTAAAgtaattgcacttagttccatgtctcagttatagatctcgcacataaagcc Alignment from Pairagon TGGCGTGTTGTTCGTAACAAAGGGAACATTTGGACAGCTTACATGTGAGTGGCAGTACACTTTTGATGAATTCACCAAAGAGCCGTTCATTGTCCATGGGAGAAGACTGCGCATTGAAGCCAAG ttagaggtttgtttattcacaggctccactggctgtcattcttctcctagTGGGGTACTGTTTGTAATAGAGGGAGCATTCAGACAACTTACATGTGAGTGGCAATACACTT---ACGAATTTACTAAAGAGCCATTCATTGTCCGTGGGAGAAGACTGCGTATTGAGGCTAAAgtaattgcacttagttccatgtctcagttatagatctcgcacataaagcc Alignment from Exonerate_protein2genome TGGCGTGTTGTTCGTAACAAAGGGAACATTTGGACAGCTTACATGTGAGTGGCAGTACACTTTTGATGAATTCACCAAAGAGCCGTTCATTGTCCATGGGAGAAGACTGCGCATTGAAGCCAAG ttagaggtttgtttattcacaggctccactggctgtcattcttctcctagTGGGGTACTGTTTGTAATAGAGGGAGCATTCAGACAACTTACATGTGAGTGGCAATACACTTAC---GAATTTACTAAAGAGCCATTCATTGTCCGTGGGAGAAGACTGCGTATTGAGGCTAAAgtaattgcacttagttccatgtctcagttatagatctcgcacataaagcc Alignment from Exonerate_coding2genome ttagaggtttgtttattcacaggctccactggctgtcattcttctcctagtggggtactgtttgtaatagagggagcattcagacaacttacatgtgagtggcaatacacttacgaatttactaaagagccattcattgtccgtgggagaagactgcgtattgaggctaaagtaattgcacttagttccatgtctcagttatagatctcgcacataaagcc Alignment from GeneWise TGGCGTGTTGTTCGTAACAAAGGGAACATTTGGACAGCTTACATGTGAGTGGCAGTACACTTTTGATGAATTCACCAAAGAGCCGTTCATTGTCCATGGGAGAAGACTGCGCATTGAAGCCAAG ttagaggtttgtttattcacaggctccactggctgtcattcttctcctagTGGGGTACTGTTTGTAATAGAGGGAGCATTCAGACAACTTACATGTGAGTGGCAATACACTTAC---GAATTTACTAAAGAGCCATTCATTGTCCGTGGGAGAAGACTGCGTATTGAGGCTAAAgtaattgcacttagttccatgtctcagttatagatctcgcacataaagcc #### Vps13a_ID4058_65 --> 2 - 0 Original Alignment gtGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT acaccagtgaggaaaaggttttatctgataagtttttttcttttttgaaggtGGGCTAGCTAGTGCTGCCTCTAAACTGACTAGCGCTATGTCGAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGAAAAGAAGCAATGAATAAGCGGCCAGCTGGACTAAGAGAGGGCATCACCCGAGGAGGGAAAGGTTTAGTCTCTgtaaggcctcaccgtgtcttggattacatagaaggactgtttcattcata Alignment from CESAR gtGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT acaccagtgaggaaaaggttttatctgataagtttttttcttttttgaaggtGGGCTAGCTAGTGCTGCCTCTAAACTGACTAGCGCTATGTCGAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGAAAAGAAGCAATGAATAAGCGGCCAGCTGGACTAAGAGAGGGCATCACCCGAGGAGGGAAAGGTTTAGTCTCTgtaaggcctcaccgtgtcttggattacatagaaggactgtttcattcata Alignment from Spaln_aa2Genome GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT acaccagtgaggaaaaggttttatctgataagtttttttcttttttgaagGTGGGCTAGCTAGTGCTGCCTCTAAACTGACTAGCGCTATGTCGAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGAAAAGAAGCAATGAATAAGCGGCCAGCTGGACTAAGAGAGGGCATCACCCGAGGAGGGAAAGGTTTAGTCTCTgtaaggcctcaccgtgtcttggattacatagaaggactgtttcattcata Alignment from Spaln_nt2Genome GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT acaccagtgaggaaaaggttttatctgataagtttttttcttttttgaagGTGGGCTAGCTAGTGCTGCCTCTAAACTGACTAGCGCTATGTCGAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGAAAAGAAGCAATGAATAAGCGGCCAGCTGGACTAAGAGAGGGCATCACCCGAGGAGGGAAAGGTTTAGTCTCTgtaaggcctcaccgtgtcttggattacatagaaggactgtttcattcata Alignment from Pairagon GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT acaccagtgaggaaaaggttttatctgataagtttttttcttttttgaagGTGGGCTAGCTAGTGCTGCCTCTAAACTGACTAGCGCTATGTCGAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGAAAAGAAGCAATGAATAAGCGGCCAGCTGGACTAAGAGAGGGCATCACCCGAGGAGGGAAAGGTTTAGTCTCTgtaaggcctcaccgtgtcttggattacatagaaggactgtttcattcata Alignment from Exonerate_protein2genome GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT acaccagtgaggaaaaggttttatctgataagtttttttcttttttgaagGTGGGCTAGCTAGTGCTGCCTCTAAACTGACTAGCGCTATGTCGAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGAAAAGAAGCAATGAATAAGCGGCCAGCTGGACTAAGAGAGGGCATCACCCGAGGAGGGAAAGGTTTAGTCTCTgtaaggcctcaccgtgtcttggattacatagaaggactgtttcattcata Alignment from Exonerate_coding2genome acaccagtgaggaaaaggttttatctgataagtttttttcttttttgaaggtgggctagctagtgctgcctctaaactgactagcgctatgtcgaaaggagtagcagccatgaccatggatgaagactaccagcagaaaagaaaagaagcaatgaataagcggccagctggactaagagagggcatcacccgaggagggaaaggtttagtctctgtaaggcctcaccgtgtcttggattacatagaaggactgtttcattcata Alignment from GeneWise GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT acaccagtgaggaaaaggttttatctgataagtttttttcttttttgaagGTGGGCTAGCTAGTGCTGCCTCTAAACTGACTAGCGCTATGTCGAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGAAAAGAAGCAATGAATAAGCGGCCAGCTGGACTAAGAGAGGGCATCACCCGAGGAGGGAAAGGTTTAGTCTCTgtaaggcctcaccgtgtcttggattacatagaaggactgtttcattcata #### Vps13a_ID4062_61 --> 0 - 2 Original Alignment TTGCACTTGAGTGTTTCCCTGAGCTCTGGTAGAGATGAAGCGAAAGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCGTTAAATCTTTTGCTGAAGAGTATTGGTGCCACCCTCACAGATGTACAAGATGTAGTTTTTaa tcgaacacaatggtgaaaatactgtaatcctcttctgtctcttactacagTTACACTTGAGTGTTTCCCTGAGCTCTGGTACAGACGAGGCAAGGGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCATTAAATCTTTTGCAAAAGAGTATTGGTGCCACACTCACAGATGTCCAAGATGTAGTTTTTaagtgagttcaatacctgtattgctagaacctccatgctgactatccagagc Alignment from CESAR TTGCACTTGAGTGTTTCCCTGAGCTCTGGTAGAGATGAAGCGAAAGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCGTTAAATCTTTTGCTGAAGAGTATTGGTGCCACCCTCACAGATGTACAAGATGTAGTTTTTaa tcgaacacaatggtgaaaatactgtaatcctcttctgtctcttactacagTTACACTTGAGTGTTTCCCTGAGCTCTGGTACAGACGAGGCAAGGGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCATTAAATCTTTTGCAAAAGAGTATTGGTGCCACACTCACAGATGTCCAAGATGTAGTTTTTaagtgagttcaatacctgtattgctagaacctccatgctgactatccagagc Alignment from Spaln_aa2Genome TTGCACTTGAGTGTTTCCCTGAGCTCTGGTAGAGATGAAGCGAAAGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCGTTAAATCTTTTGCTGAAGAGTATTGGTGCCACCCTCACAGATGTACAAGATGTAGTTTTTAA tcgaacacaatggtgaaaatactgtaatcctcttctgtctcttactacagTTACACTTGAGTGTTTCCCTGAGCTCTGGTACAGACGAGGCAAGGGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCATTAAATCTTTTGCAAAAGAGTATTGGTGCCACACTCACAGATGTCCAAGATGTAGTTTTTAAgtgagttcaatacctgtattgctagaacctccatgctgactatccagagc Alignment from Spaln_nt2Genome TTGCACTTGAGTGTTTCCCTGAGCTCTGGTAGAGATGAAGCGAAAGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCGTTAAATCTTTTGCTGAAGAGTATTGGTGCCACCCTCACAGATGTACAAGATGTAGTTTTTAA tcgaacacaatggtgaaaatactgtaatcctcttctgtctcttactacagTTACACTTGAGTGTTTCCCTGAGCTCTGGTACAGACGAGGCAAGGGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCATTAAATCTTTTGCAAAAGAGTATTGGTGCCACACTCACAGATGTCCAAGATGTAGTTTTTAAgtgagttcaatacctgtattgctagaacctccatgctgactatccagagc Alignment from Pairagon TTGCACTTGAGTGTTTCCCTGAGCTCTGGTAGAGATGAAGCGAAAGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCGTTAAATCTTTTGCTGAAGAGTATTGGTGCCACCCTCACAGATGTACAAGATGTAGTTTTTAA tcgaacacaatggtgaaaatactgtaatcctcttctgtctcttactacagTTACACTTGAGTGTTTCCCTGAGCTCTGGTACAGACGAGGCAAGGGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCATTAAATCTTTTGCAAAAGAGTATTGGTGCCACACTCACAGATGTCCAAGATGTAGTTTTTAAgtgagttcaatacctgtattgctagaacctccatgctgactatccagagc Alignment from Exonerate_protein2genome TTGCACTTGAGTGTTTCCCTGAGCTCTGGTAGAGATGAAGCGAAAGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCGTTAAATCTTTTGCTGAAGAGTATTGGTGCCACCCTCACAGATGTACAAGATGTAGTTTTTAA tcgaacacaatggtgaaaatactgtaatcctcttctgtctcttactacagTTACACTTGAGTGTTTCCCTGAGCTCTGGTACAGACGAGGCAAGGGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCATTAAATCTTTTGCAAAAGAGTATTGGTGCCACACTCACAGATGTCCAAGATGTAGTTTTTAAgtgagttcaatacctgtattgctagaacctccatgctgactatccagagc Alignment from Exonerate_coding2genome tcgaacacaatggtgaaaatactgtaatcctcttctgtctcttactacagttacacttgagtgtttccctgagctctggtacagacgaggcaagggactcagaacaacatggaggactaattcctgttcattcattaaatcttttgcaaaagagtattggtgccacactcacagatgtccaagatgtagtttttaagtgagttcaatacctgtattgctagaacctccatgctgactatccagagc Alignment from GeneWise TTGCACTTGAGTGTTTCCCTGAGCTCTGGTAGAGATGAAGCGAAAGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCGTTAAATCTTTTGCTGAAGAGTATTGGTGCCACCCTCACAGATGTACAAGATGTAGTTTTTAA tcgaacacaatggtgaaaatactgtaatcctcttctgtctcttactacagTTACACTTGAGTGTTTCCCTGAGCTCTGGTACAGACGAGGCAAGGGACTCAGAACAACATGGAGGACTAATTCCTGTTCATTCATTAAATCTTTTGCAAAAGAGTATTGGTGCCACACTCACAGATGTCCAAGATGTAGTTTTTAAgtgagttcaatacctgtattgctagaacctccatgctgactatccagagc #### Vps13a_ID4064_59 --> 1 - 0 Original Alignment gTATTTCAAAGTGTTGATTCAAGAAATGGACCTCAGTTTGGATCTTGGATTTGTGTATGCCCTAGCAGACCTTGTCACAAAAGCTGAAGTGACTGAGAAGACAGAG aatctatcaagcctagatacaataatagatactgttttggtgtattccaggTATTTCAAGGTGTTGGATCAAGAAATGGACCTCAGTCTGGATCTTGGATTTGTGTATGCCATAGAGGATCTTGTAATGAAGGCCAAGGTGACTGAGAAGACAGAGgtaagagatagaagaacagcacccatcaaacagaaaggggtcttgacaga Alignment from CESAR gTATTTCAAAGTGTTGATTCAAGAAATGGACCTCAGTTTGGATCTTGGATTTGTGTATGCCCTAGCAGACCTTGTCACAAAAGCTGAAGTGACTGAGAAGACAGAG aatctatcaagcctagatacaataatagatactgttttggtgtattccaggTATTTCAAGGTGTTGGATCAAGAAATGGACCTCAGTCTGGATCTTGGATTTGTGTATGCCATAGAGGATCTTGTAATGAAGGCCAAGGTGACTGAGAAGACAGAGgtaagagatagaagaacagcacccatcaaacagaaaggggtcttgacaga Alignment from Spaln_aa2Genome GTATTTCAAAGTGTTGATTCAAGAAATGGACCTCAGTTTGGATCTTGGATTTGTGTATGCCCTAGCAGACCTTGTCACAAAAGCTGAAGTGACTGAGAAGACAGAG aatctatcaagcctagatacaataatagatactgttttggtgtattccagGTATTTCAAGGTGTTGGATCAAGAAATGGACCTCAGTCTGGATCTTGGATTTGTGTATGCCATAGAGGATCTTGTAATGAAGGCCAAGGTGACTGAGAAGACAGAGgtaagagatagaagaacagcacccatcaaacagaaaggggtcttgacaga Alignment from Spaln_nt2Genome GTATTTCAAAGTGTTGATTCAAGAAATGGACCTCAGTTTGGATCTTGGATTTGTGTATGCCCTAGCAGACCTTGTCACAAAAGCTGAAGTGACTGAGAAGACAGAG aatctatcaagcctagatacaataatagatactgttttggtgtattccagGTATTTCAAGGTGTTGGATCAAGAAATGGACCTCAGTCTGGATCTTGGATTTGTGTATGCCATAGAGGATCTTGTAATGAAGGCCAAGGTGACTGAGAAGACAGAGgtaagagatagaagaacagcacccatcaaacagaaaggggtcttgacaga Alignment from Pairagon GTATTTCAAAGTGTTGATTCAAGAAATGGACCTCAGTTTGGATCTTGGATTTGTGTATGCCCTAGCAGACCTTGTCACAAAAGCTGAAGTGACTGAGAAGACAGAG aatctatcaagcctagatacaataatagatactgttttggtgtattccagGTATTTCAAGGTGTTGGATCAAGAAATGGACCTCAGTCTGGATCTTGGATTTGTGTATGCCATAGAGGATCTTGTAATGAAGGCCAAGGTGACTGAGAAGACAGAGgtaagagatagaagaacagcacccatcaaacagaaaggggtcttgacaga Alignment from Exonerate_protein2genome GTATTTCAAAGTGTTGATTCAAGAAATGGACCTCAGTTTGGATCTTGGATTTGTGTATGCCCTAGCAGACCTTGTCACAAAAGCTGAAGTGACTGAGAAGACAGAG aatctatcaagcctagatacaataatagatactgttttggtgtattccagGTATTTCAAGGTGTTGGATCAAGAAATGGACCTCAGTCTGGATCTTGGATTTGTGTATGCCATAGAGGATCTTGTAATGAAGGCCAAGGTGACTGAGAAGACAGAGgtaagagatagaagaacagcacccatcaaacagaaaggggtcttgacaga Alignment from Exonerate_coding2genome aatctatcaagcctagatacaataatagatactgttttggtgtattccaggtatttcaaggtgttggatcaagaaatggacctcagtctggatcttggatttgtgtatgccatagaggatcttgtaatgaaggccaaggtgactgagaagacagaggtaagagatagaagaacagcacccatcaaacagaaaggggtcttgacaga Alignment from GeneWise GTATTTCAAAGTGTTGATTCAAGAAATGGACCTCAGTTTGGATCTTGGATTTGTGTATGCCCTAGCAGACCTTGTCACAAAAGCTGAAGTGACTGAGAAGACAGAG aatctatcaagcctagatacaataatagatactgttttggtgtattccagGTATTTCAAGGTGTTGGATCAAGAAATGGACCTCAGTCTGGATCTTGGATTTGTGTATGCCATAGAGGATCTTGTAATGAAGGCCAAGGTGACTGAGAAGACAGAGgtaagagatagaagaacagcacccatcaaacagaaaggggtcttgacaga #### Vps13a_ID4069_54 --> 0 - 2 Original Alignment GATATGATGACGCCCATAAGTGTGGGGAAAAAAACCATTTATTTAGTGTCGTTCTTTGAAGGCCTGCAGCGTATTATTTTATTCACTGAAGATCCAAGAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCGGAGCTGGAAGTTGTGCTGGCGTTACAGGATGTCGGGATTTCACTTGTCAATAACTATACAAAGCAAGAAGTAGCCTACATAGGCATTACAag gaataggagaagaggcattgttatgtatttttattgtcctttcttcacagGATATGATGACACCAATAAGTCTGGGGAAAGAGACAATTTATTTAGTGTCATTCTTTGAAGGCCTGCAGCACATTATTTTGTTCACTGAAGATCCAAGAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCAGAACTGGAAGTTGTGCTGGCATTACAGGATGTCGGAATTTCACTTGTCAATAATTATACAAAGCAAGAAGCAGCCTACATAGGCATTACAaggtgtgtaccaactaacctcaaaagctagaacttctcaattaggcctcccc Alignment from CESAR GATATGATGACGCCCATAAGTGTGGGGAAAAAAACCATTTATTTAGTGTCGTTCTTTGAAGGCCTGCAGCGTATTATTTTATTCACTGAAGATCCAAGAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCGGAGCTGGAAGTTGTGCTGGCGTTACAGGATGTCGGGATTTCACTTGTCAATAACTATACAAAGCAAGAAGTAGCCTACATAGGCATTACAag gaataggagaagaggcattgttatgtatttttattgtcctttcttcacagGATATGATGACACCAATAAGTCTGGGGAAAGAGACAATTTATTTAGTGTCATTCTTTGAAGGCCTGCAGCACATTATTTTGTTCACTGAAGATCCAAGAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCAGAACTGGAAGTTGTGCTGGCATTACAGGATGTCGGAATTTCACTTGTCAATAATTATACAAAGCAAGAAGCAGCCTACATAGGCATTACAaggtgtgtaccaactaacctcaaaagctagaacttctcaattaggcctcccc Alignment from Spaln_aa2Genome GATATGATGACGCCCATAAGTGTGGGGAAAAAAACCATTTATTTAGTGTCGTTCTTTGAAGGCCTGCAGCGTATTATTTTATTCACTGAAGATCCAAGAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCGGAGCTGGAAGTTGTGCTGGCGTTACAGGATGTCGGGATTTCACTTGTCAATAACTATACAAAGCAAGAAGTAGCCTACATAGGCATTACAAG gaataggagaagaggcattgttatgtatttttattgtcctttcttcacagGATATGATGACACCAATAAGTCTGGGGAAAGAGACAATTTATTTAGTGTCATTCTTTGAAGGCCTGCAGCACATTATTTTGTTCACTGAAGATCCAAGAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCAGAACTGGAAGTTGTGCTGGCATTACAGGATGTCGGAATTTCACTTGTCAATAATTATACAAAGCAAGAAGCAGCCTACATAGGCATTACAAGgtgtgtaccaactaacctcaaaagctagaacttctcaattaggcctcccc Alignment from Spaln_nt2Genome GATATGATGACGCCCATAAGTGTGGGGAAAAAAACCATTTATTTAGTGTCGTTCTTTGAAGGCCTGCAGCGTATTATTTTATTCACTGAAGATCCAAGAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCGGAGCTGGAAGTTGTGCTGGCGTTACAGGATGTCGGGATTTCACTTGTCAATAACTATACAAAGCAAGAAGTAGCCTACATAGGCATTACAAG gaataggagaagaggcattgttatgtatttttattgtcctttcttcacagGATATGATGACACCAATAAGTCTGGGGAAAGAGACAATTTATTTAGTGTCATTCTTTGAAGGCCTGCAGCACATTATTTTGTTCACTGAAGATCCAAGAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCAGAACTGGAAGTTGTGCTGGCATTACAGGATGTCGGAATTTCACTTGTCAATAATTATACAAAGCAAGAAGCAGCCTACATAGGCATTACAAGgtgtgtaccaactaacctcaaaagctagaacttctcaattaggcctcccc Alignment from Pairagon GATATGATGACGCCCATAAGTGTGGGGAAAAAAACCATTTATTTAGTGTCGTTCTTTGAAGGCCTGCAGCGTATTATTTTATTCACTGAAGATCCAAGAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCGGAGCTGGAAGTTGTGCTGGCGTTACAGGATGTCGGGATTTCACTTGTCAATAACTATACAAAGCAAGAAGTAGCCTACATAGGCATTACAAG gaataggagaagaggcattgttatgtatttttattgtcctttcttcacagGATATGATGACACCAATAAGTCTGGGGAAAGAGACAATTTATTTAGTGTCATTCTTTGAAGGCCTGCAGCACATTATTTTGTTCACTGAAGATCCAAGAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCAGAACTGGAAGTTGTGCTGGCATTACAGGATGTCGGAATTTCACTTGTCAATAATTATACAAAGCAAGAAGCAGCCTACATAGGCATTACAAGgtgtgtaccaactaacctcaaaagctagaacttctcaattaggcctcccc Alignment from Exonerate_protein2genome GAAGTAACCCATAAGGATGATATGATGACGCCCATAAGTGTGGGGAAAAAAACCATTTATTTAGTGTCGTTCTTTGAAGGCCTGCAGCGTATTATTTTATTCACTGAAGATCCAAGAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCGGAGCTGGAAGTTGTGCTGGCGTTACAGGATGTCGGGATTTCACTTGTCAATAACTATACAAAGCAAGAAGTAGCCTACATAGGCATTACAAG gaataggagaagaggcattgttatgtatttttATTGTCCTTTCTTCACAGGATATGATGACACCAATAAGTCTGGGGAAAGAGACAATTTATTTAGTGTCATTCTTTGAAGGCCTGCAGCACATTATTTTGTTCACTGAAGATCCAAGAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCAGAACTGGAAGTTGTGCTGGCATTACAGGATGTCGGAATTTCACTTGTCAATAATTATACAAAGCAAGAAGCAGCCTACATAGGCATTACAAGgtgtgtaccaactaacctcaaaagctagaacttctcaattaggcctcccc Alignment from Exonerate_coding2genome gaataggagaagaggcattgttatgtatttttattgtcctttcttcacaggatatgatgacaccaataagtctggggaaagagacaatttatttagtgtcattctttgaaggcctgcagcacattattttgttcactgaagatccaagagtgtttaaagtaacgtatgaaagtgaaaaggcagagttagcagaactggaagttgtgctggcattacaggatgtcggaatttcacttgtcaataattatacaaagcaagaagcagcctacataggcattacaaggtgtgtaccaactaacctcaaaagctagaacttctcaattaggcctcccc Alignment from GeneWise GATATGATGACGCCCATAAGTGTGGGGAAAAAAACCATTTATTTAGTGTCGTTCTTTGAAGGCCTGCAGCGTATTATTTTATTCACTGAAGATCCAAGAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCGGAGCTGGAAGTTGTGCTGGCGTTACAGGATGTCGGGATTTCACTTGTCAATAACTATACAAAGCAAGAAGTAGCCTACATAGGCATTACAAG gaataggagaagaggcattgttatgtatttttattgtcctttcttcacagGATATGATGACACCAATAAGTCTGGGGAAAGAGACAATTTATTTAGTGTCATTCTTTGAAGGCCTGCAGCACATTATTTTGTTCACTGAAGATCCAAGAGTGTTTAAAGTAACGTATGAAAGTGAAAAGGCAGAGTTAGCAGAACTGGAAGTTGTGCTGGCATTACAGGATGTCGGAATTTCACTTGTCAATAATTATACAAAGCAAGAAGCAGCCTACATAGGCATTACAAGgtgtgtaccaactaacctcaaaagctagaacttctcaattaggcctcccc #### Vps13a_ID4073_50 --> 0 - 0 Original Alignment GTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACCAGAATTGTGACATTTATTCCGTTTTATATGATTAAAAACAAAAGCAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAG gtactccatcctatcaagtttatcctatagtagcaccctgtttgttctagGTTGGTGTTACTATAAACCTGGGCAGTTTTAACATTACAAGAATTGCAACATTTATTCCATTTTACATGATCAAGAACAAAAGTAAATACCATATATCAGTAGCAGAGGAAGGAAGTGATAAATGGCTTACTCTTGACTTAGAGCAGgcaagtaaatggcaaaacatgaacaattctgtggcttatggaaaaaataa Alignment from CESAR GTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACCAGAATTGTGACATTTATTCCGTTTTATATGATTAAAAACAAAAGCAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAG gtactccatcctatcaagtttatcctatagtagcaccctgtttgttctagGTTGGTGTTACTATAAACCTGGGCAGTTTTAACATTACAAGAATTGCAACATTTATTCCATTTTACATGATCAAGAACAAAAGTAAATACCATATATCAGTAGCAGAGGAAGGAAGTGATAAATGGCTTACTCTTGACTTAGAGCAGgcaagtaaatggcaaaacatgaacaattctgtggcttatggaaaaaataa Alignment from Spaln_aa2Genome GTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACCAGAATTGTGACATTTATTCCGTTTTATATGATTAAAAACAAAAGCAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAG gtactccatcctatcaagtttatcctatagtagcaccctgtttgttctagGTTGGTGTTACTATAAACCTGGGCAGTTTTAACATTACAAGAATTGCAACATTTATTCCATTTTACATGATCAAGAACAAAAGTAAATACCATATATCAGTAGCAGAGGAAGGAAGTGATAAATGGCTTACTCTTGACTTAGAGCAGgcaagtaaatggcaaaacatgaacaattctgtggcttatggaaaaaataa Alignment from Spaln_nt2Genome GTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACCAGAATTGTGACATTTATTCCGTTTTATATGATTAAAAACAAAAGCAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAG gtactccatcctatcaagtttatcctatagtagcaccctgtttgttctagGTTGGTGTTACTATAAACCTGGGCAGTTTTAACATTACAAGAATTGCAACATTTATTCCATTTTACATGATCAAGAACAAAAGTAAATACCATATATCAGTAGCAGAGGAAGGAAGTGATAAATGGCTTACTCTTGACTTAGAGCAGgcaagtaaatggcaaaacatgaacaattctgtggcttatggaaaaaataa Alignment from Pairagon GTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACCAGAATTGTGACATTTATTCCGTTTTATATGATTAAAAACAAAAGCAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAG gtactccatcctatcaagtttatcctatagtagcaccctgtttgttctagGTTGGTGTTACTATAAACCTGGGCAGTTTTAACATTACAAGAATTGCAACATTTATTCCATTTTACATGATCAAGAACAAAAGTAAATACCATATATCAGTAGCAGAGGAAGGAAGTGATAAATGGCTTACTCTTGACTTAGAGCAGgcaagtaaatggcaaaacatgaacaattctgtggcttatggaaaaaataa Alignment from Exonerate_protein2genome GTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACCAGAATTGTGACATTTATTCCGTTTTATATGATTAAAAACAAAAGCAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAG gtactccatcctatcaagtttatcctatagtagcaccctgtttgttctagGTTGGTGTTACTATAAACCTGGGCAGTTTTAACATTACAAGAATTGCAACATTTATTCCATTTTACATGATCAAGAACAAAAGTAAATACCATATATCAGTAGCAGAGGAAGGAAGTGATAAATGGCTTACTCTTGACTTAGAGCAGgcaagtaaatggcaaaacatgaacaattctgtggcttatggaaaaaataa Alignment from Exonerate_coding2genome GTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACCAGAATTGTGACATTTATTCCGTTTTATATGATTAAAAACAAAAGCAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAGAGT gtactccatcctatcaagtttatcctatagtagcaccctgtttgttctagGTTGGTGTTACTATAAACCTGGGCAGTTTTAACATTACAAGAATTGCAACATTTATTCCATTTTACATGATCAAGAACAAAAGTAAATACCATATATCAGTAGCAGAGGAAGGAAGTGATAAATGGCTTACTCTTGACTTAGAGCAGGCAagtaaatggcaaaacatgaacaattctgtggcttatggaaaaaataa Alignment from GeneWise GTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACCAGAATTGTGACATTTATTCCGTTTTATATGATTAAAAACAAAAGCAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAG---------------------------AGT gtactccatcctatcaagtttatcctatagtagcaccctgtttgttctagGTTGGTGTTACTATAAACCTGGGCAGTTTTAACATTACAAGAATTGCAACATTTATTCCATTTTACATGATCAAGAACAAAAGTAAATACCATATATCAGTAGCAGAGGAAGGAAGTGATAAATGGCTTACTCTTGACTTAGAGCAGGCAAGTAAATGGCAAAACATGAACAATTCTgtggcttatggaaaaaataa #### Vps13a_ID4075_48 --> 0 - 0 Original Alignment GGCATTGAGAACACTGTTGTTACTCTAAGTGAAGGACATTCATCACAGATCTATAATGTAGAAATGGACCAAGCCAAGCTACACTTAAAATTACTCGACTATCTTAATCATGATTGGAAAAGTGAATTTTATATAAGATCTAGTCAACAAGACATCAATTTCATCAACTTTACCTGTCTCACAGAAATGGAAAAGAGTGACTTGGATATTGCTATCCATATGACTTACAACACTGGTCAGACAGTTGTGGCATTTCATAGTCCGTATTGGATGGTCAATAAAACCAATCGGATGCTACAGTACAAAGCAGATGGAATTCACCGAAAGCATCCACCTAATTATACAAAACCAGTTCTCTTTTCCTTTCAGCCAAATCACTTTTTTAACAACAATAAG agctgactgcaggttgcaaattcgagttaatttttacttttcttacacagGGTATTGAGAATACTGTTGTTACTCTAAGTGAAGGGCATTCATCACAGATATATAATGTGAGAATGGACCAAGCAAAGCTACACCTAAAATTGGTTTATTACCTTAACCATGGCTGGAAGAGTGAGTTCTATATAAGATCTAGTCAACAAGACATCAATTTTATCAATTTTACATGCCTGACAGAAATGGAAAAGAGTGATTTGGACATTGCAATCCACATGACTTACAACACTGGACAGACTGTAGTGGCTTTCCATAGTCCTTACTGGATGGCCAACAAAACAAATAGAATGCTACGCTACAAGGCAGATGGCATTCACCGAAAACAT---CCCAACTATACAAGGCCAGTTCTCTTTTCCTTTCAAACAAACCACTTTTTCAACAACAATAAAgtttgtgaaactaattttctacttaagaaagataatccaataccccatag Alignment from CESAR GGCATTGAGAACACTGTTGTTACTCTAAGTGAAGGACATTCATCACAGATCTATAATGTAGAAATGGACCAAGCCAAGCTACACTTAAAATTACTCGACTATCTTAATCATGATTGGAAAAGTGAATTTTATATAAGATCTAGTCAACAAGACATCAATTTCATCAACTTTACCTGTCTCACAGAAATGGAAAAGAGTGACTTGGATATTGCTATCCATATGACTTACAACACTGGTCAGACAGTTGTGGCATTTCATAGTCCGTATTGGATGGTCAATAAAACCAATCGGATGCTACAGTACAAAGCAGATGGAATTCACCGAAAGCATCCACCTAATTATACAAAACCAGTTCTCTTTTCCTTTCAGCCAAATCACTTTTTTAACAACAATAAG agctgactgcaggttgcaaattcgagttaatttttacttttcttacacagGGTATTGAGAATACTGTTGTTACTCTAAGTGAAGGGCATTCATCACAGATATATAATGTGAGAATGGACCAAGCAAAGCTACACCTAAAATTGGTTTATTACCTTAACCATGGCTGGAAGAGTGAGTTCTATATAAGATCTAGTCAACAAGACATCAATTTTATCAATTTTACATGCCTGACAGAAATGGAAAAGAGTGATTTGGACATTGCAATCCACATGACTTACAACACTGGACAGACTGTAGTGGCTTTCCATAGTCCTTACTGGATGGCCAACAAAACAAATAGAATGCTACGCTACAAGGCAGATGGCATTCACCGAAAACAT---CCCAACTATACAAGGCCAGTTCTCTTTTCCTTTCAAACAAACCACTTTTTCAACAACAATAAAgtttgtgaaactaattttctacttaagaaagataatccaataccccatag Alignment from Spaln_aa2Genome GGCATTGAGAACACTGTTGTTACTCTAAGTGAAGGACATTCATCACAGATCTATAATGTAGAAATGGACCAAGCCAAGCTACACTTAAAATTACTCGACTATCTTAATCATGATTGGAAAAGTGAATTTTATATAAGATCTAGTCAACAAGACATCAATTTCATCAACTTTACCTGTCTCACAGAAATGGAAAAGAGTGACTTGGATATTGCTATCCATATGACTTACAACACTGGTCAGACAGTTGTGGCATTTCATAGTCCGTATTGGATGGTCAATAAAACCAATCGGATGCTACAGTACAAAGCAGATGGAATTCACCGAAAGCATCCACCTAATTATACAAAACCAGTTCTCTTTTCCTTTCAGCCAAATCACTTTTTTAACAACAATAAG agctgactgcaggttgcaaattcgagttaatttttacttttcttacacagGGTATTGAGAATACTGTTGTTACTCTAAGTGAAGGGCATTCATCACAGATATATAATGTGAGAATGGACCAAGCAAAGCTACACCTAAAATTGGTTTATTACCTTAACCATGGCTGGAAGAGTGAGTTCTATATAAGATCTAGTCAACAAGACATCAATTTTATCAATTTTACATGCCTGACAGAAATGGAAAAGAGTGATTTGGACATTGCAATCCACATGACTTACAACACTGGACAGACTGTAGTGGCTTTCCATAGTCCTTACTGGATGGCCAACAAAACAAATAGAATGCTACGCTACAAGGCAGATGGCATTCACCGAAAACAT---CCCAACTATACAAGGCCAGTTCTCTTTTCCTTTCAAACAAACCACTTTTTCAACAACAATAAAgtttgtgaaactaattttctacttaagaaagataatccaataccccatag Alignment from Spaln_nt2Genome GGCATTGAGAACACTGTTGTTACTCTAAGTGAAGGACATTCATCACAGATCTATAATGTAGAAATGGACCAAGCCAAGCTACACTTAAAATTACTCGACTATCTTAATCATGATTGGAAAAGTGAATTTTATATAAGATCTAGTCAACAAGACATCAATTTCATCAACTTTACCTGTCTCACAGAAATGGAAAAGAGTGACTTGGATATTGCTATCCATATGACTTACAACACTGGTCAGACAGTTGTGGCATTTCATAGTCCGTATTGGATGGTCAATAAAACCAATCGGATGCTACAGTACAAAGCAGATGGAATTCACCGAAAGCATCCACCTAATTATACAAAACCAGTTCTCTTTTCCTTTCAGCCAAATCACTTTTTTAACAACAATAAG agctgactgcaggttgcaaattcgagttaatttttacttttcttacacagGGTATTGAGAATACTGTTGTTACTCTAAGTGAAGGGCATTCATCACAGATATATAATGTGAGAATGGACCAAGCAAAGCTACACCTAAAATTGGTTTATTACCTTAACCATGGCTGGAAGAGTGAGTTCTATATAAGATCTAGTCAACAAGACATCAATTTTATCAATTTTACATGCCTGACAGAAATGGAAAAGAGTGATTTGGACATTGCAATCCACATGACTTACAACACTGGACAGACTGTAGTGGCTTTCCATAGTCCTTACTGGATGGCCAACAAAACAAATAGAATGCTACGCTACAAGGCAGATGGCATTCACCGAAAACAT---CCCAACTATACAAGGCCAGTTCTCTTTTCCTTTCAAACAAACCACTTTTTCAACAACAATAAAgtttgtgaaactaattttctacttaagaaagataatccaataccccatag Alignment from Pairagon GGCATTGAGAACACTGTTGTTACTCTAAGTGAAGGACATTCATCACAGATCTATAATGTAGAAATGGACCAAGCCAAGCTACACTTAAAATTACTCGACTATCTTAATCATGATTGGAAAAGTGAATTTTATATAAGATCTAGTCAACAAGACATCAATTTCATCAACTTTACCTGTCTCACAGAAATGGAAAAGAGTGACTTGGATATTGCTATCCATATGACTTACAACACTGGTCAGACAGTTGTGGCATTTCATAGTCCGTATTGGATGGTCAATAAAACCAATCGGATGCTACAGTACAAAGCAGATGGAATTCACCGAAAGCATCCACCTAATTATACAAAACCAGTTCTCTTTTCCTTTCAGCCAAATCACTTTTTTAACAACAATAAG agctgactgcaggttgcaaattcgagttaatttttacttttcttacacagGGTATTGAGAATACTGTTGTTACTCTAAGTGAAGGGCATTCATCACAGATATATAATGTGAGAATGGACCAAGCAAAGCTACACCTAAAATTGGTTTATTACCTTAACCATGGCTGGAAGAGTGAGTTCTATATAAGATCTAGTCAACAAGACATCAATTTTATCAATTTTACATGCCTGACAGAAATGGAAAAGAGTGATTTGGACATTGCAATCCACATGACTTACAACACTGGACAGACTGTAGTGGCTTTCCATAGTCCTTACTGGATGGCCAACAAAACAAATAGAATGCTACGCTACAAGGCAGATGGCATTCACCGAAAACAT---CCCAACTATACAAGGCCAGTTCTCTTTTCCTTTCAAACAAACCACTTTTTCAACAACAATAAAgtttgtgaaactaattttctacttaagaaagataatccaataccccatag Alignment from Exonerate_protein2genome GGCATTGAGAACACTGTTGTTACTCTAAGTGAAGGACATTCATCACAGATCTATAATGTAGAAATGGACCAAGCCAAGCTACACTTAAAATTACTCGACTATCTTAATCATGATTGGAAAAGTGAATTTTATATAAGATCTAGTCAACAAGACATCAATTTCATCAACTTTACCTGTCTCACAGAAATGGAAAAGAGTGACTTGGATATTGCTATCCATATGACTTACAACACTGGTCAGACAGTTGTGGCATTTCATAGTCCGTATTGGATGGTCAATAAAACCAATCGGATGCTACAGTACAAAGCAGATGGAATTCACCGAAAGCATCCACCTAATTATACAAAACCAGTTCTCTTTTCCTTTCAGCCAAATCACTTTTTTAACAACAATAAG agctgactgcaggttgcaaattcgagttaatttttacttttcttacacagGGTATTGAGAATACTGTTGTTACTCTAAGTGAAGGGCATTCATCACAGATATATAATGTGAGAATGGACCAAGCAAAGCTACACCTAAAATTGGTTTATTACCTTAACCATGGCTGGAAGAGTGAGTTCTATATAAGATCTAGTCAACAAGACATCAATTTTATCAATTTTACATGCCTGACAGAAATGGAAAAGAGTGATTTGGACATTGCAATCCACATGACTTACAACACTGGACAGACTGTAGTGGCTTTCCATAGTCCTTACTGGATGGCCAACAAAACAAATAGAATGCTACGCTACAAGGCAGATGGCATTCACCGAAAACAT---CCCAACTATACAAGGCCAGTTCTCTTTTCCTTTCAAACAAACCACTTTTTCAACAACAATAAAgtttgtgaaactaattttctacttaagaaagataatccaataccccatag Alignment from Exonerate_coding2genome GGCATTGAGAACACTGTTGTTACTCTAAGTGAAGGACATTCATCACAGATCTATAATGTAGAAATGGACCAAGCCAAGCTACACTTAAAATTACTCGACTATCTTAATCATGATTGGAAAAGTGAATTTTATATAAGATCTAGTCAACAAGACATCAATTTCATCAACTTTACCTGTCTCACAGAAATGGAAAAGAGTGACTTGGATATTGCTATCCATATGACTTACAACACTGGTCAGACAGTTGTGGCATTTCATAGTCCGTATTGGATGGTCAATAAAACCAATCGGATGCTACAGTACAAAGCAGATGGAATTCACCGAAAGCATCCACCTAATTATACAAAACCAGTTCTCTTTTCCTTTCAGCCAAATCACTTTTTTAACAACAATAAG agctgactgcaggttgcaaattcgagttaatttttacttttcttacacagGGTATTGAGAATACTGTTGTTACTCTAAGTGAAGGGCATTCATCACAGATATATAATGTGAGAATGGACCAAGCAAAGCTACACCTAAAATTGGTTTATTACCTTAACCATGGCTGGAAGAGTGAGTTCTATATAAGATCTAGTCAACAAGACATCAATTTTATCAATTTTACATGCCTGACAGAAATGGAAAAGAGTGATTTGGACATTGCAATCCACATGACTTACAACACTGGACAGACTGTAGTGGCTTTCCATAGTCCTTACTGGATGGCCAACAAAACAAATAGAATGCTACGCTACAAGGCAGATGGCATTCACCGAAAACAT---CCCAACTATACAAGGCCAGTTCTCTTTTCCTTTCAAACAAACCACTTTTTCAACAACAATAAAgtttgtgaaactaattttctacttaagaaagataatccaataccccatag Alignment from GeneWise GGCATTGAGAACACTGTTGTTACTCTAAGTGAAGGACATTCATCACAGATCTATAATGTAGAAATGGACCAAGCCAAGCTACACTTAAAATTACTCGACTATCTTAATCATGATTGGAAAAGTGAATTTTATATAAGATCTAGTCAACAAGACATCAATTTCATCAACTTTACCTGTCTCACAGAAATGGAAAAGAGTGACTTGGATATTGCTATCCATATGACTTACAACACTGGTCAGACAGTTGTGGCATTTCATAGTCCGTATTGGATGGTCAATAAAACCAATCGGATGCTACAGTACAAAGCAGATGGAATTCACCGAAAGCATCCACCTAATTATACAAAACCAGTTCTCTTTTCCTTTCAGCCAAATCACTTTTTTAACAACAATAAG agctgactgcaggttgcaaattcgagttaatttttacttttcttacacagGGTATTGAGAATACTGTTGTTACTCTAAGTGAAGGGCATTCATCACAGATATATAATGTGAGAATGGACCAAGCAAAGCTACACCTAAAATTGGTTTATTACCTTAACCATGGCTGGAAGAGTGAGTTCTATATAAGATCTAGTCAACAAGACATCAATTTTATCAATTTTACATGCCTGACAGAAATGGAAAAGAGTGATTTGGACATTGCAATCCACATGACTTACAACACTGGACAGACTGTAGTGGCTTTCCATAGTCCTTACTGGATGGCCAACAAAACAAATAGAATGCTACGCTACAAGGCAGATGGCATTCACCGAAAACATCCC---AACTATACAAGGCCAGTTCTCTTTTCCTTTCAAACAAACCACTTTTTCAACAACAATAAAgtttgtgaaactaattttctacttaagaaagataatccaataccccatag #### Vps13a_ID4076_47 --> 1 - 0 Original Alignment aTCATCCCTTTCCCTGGTGCCAGAAGACCAGGACTACCAGCTATGTGAAGGAATCGACTTTGAAGAAATCATAAAATATGATGGACAGCTTCTGAAGAAGAAATGTAGATCTACAAACCCTTCTAAGAAATCATTTGTTATTAATATTGTCCCAGAAAAGGATAATTTGGCTTCCCTGTCAGTGTATTCGGAAGATGGTTGGGACTTACCATATGTCCTGCACTTGTGGCCACCCATCCTCATCCGGAACCTTCTTCCCTACAAAGTTGCTTATTACATTGAG acctagtgcttctgtaagatagctgtttaaaaaatctcttatctcaacagaACACCACTCCCACTAGTGCCAGAGGACCAGGACTACCAGTTATGTGAAGGGATAGATTTTGAAGAAATCATAAAATATGATGGACAGCTTCTGAAGAAGAAGTGTAGATCTACAAACCCATCTAAGAAATCATTTGTTATTAATACTGTCCCTGAAAAGGATAATCTAGCATCCCTATCAGTATATTTGGAAGATGGTTGGGACTTACTATATGTCCTGCATTTGTGGCCACCCCTTCTCATCCGGAACCTTCTTCCCTACAAGGTTGCTTCTTACATTGAGgtatgtagatccatagcacaagggaggtgatcaaagccaaggtgaacaaa Alignment from CESAR aTCATCCCTTTCCCTGGTGCCAGAAGACCAGGACTACCAGCTATGTGAAGGAATCGACTTTGAAGAAATCATAAAATATGATGGACAGCTTCTGAAGAAGAAATGTAGATCTACAAACCCTTCTAAGAAATCATTTGTTATTAATATTGTCCCAGAAAAGGATAATTTGGCTTCCCTGTCAGTGTATTCGGAAGATGGTTGGGACTTACCATATGTCCTGCACTTGTGGCCACCCATCCTCATCCGGAACCTTCTTCCCTACAAAGTTGCTTATTACATTGAG acctagtgcttctgtaagatagctgtttaaaaaatctcttatctcaacagaACACCACTCCCACTAGTGCCAGAGGACCAGGACTACCAGTTATGTGAAGGGATAGATTTTGAAGAAATCATAAAATATGATGGACAGCTTCTGAAGAAGAAGTGTAGATCTACAAACCCATCTAAGAAATCATTTGTTATTAATACTGTCCCTGAAAAGGATAATCTAGCATCCCTATCAGTATATTTGGAAGATGGTTGGGACTTACTATATGTCCTGCATTTGTGGCCACCCCTTCTCATCCGGAACCTTCTTCCCTACAAGGTTGCTTCTTACATTGAGgtatgtagatccatagcacaagggaggtgatcaaagccaaggtgaacaaa Alignment from Spaln_aa2Genome ATCATCCCTTTCCCTGGTGCCAGAAGACCAGGACTACCAGCTATGTGAAGGAATCGACTTTGAAGAAATCATAAAATATGATGGACAGCTTCTGAAGAAGAAATGTAGATCTACAAACCCTTCTAAGAAATCATTTGTTATTAATATTGTCCCAGAAAAGGATAATTTGGCTTCCCTGTCAGTGTATTCGGAAGATGGTTGGGACTTACCATATGTCCTGCACTTGTGGCCACCCATCCTCATCCGGAACCTTCTTCCCTACAAAGTTGCTTATTACATTGAG acctagtgcttctgtaagatagctgtttaaaaaatctcttatctcaacagAACACCACTCCCACTAGTGCCAGAGGACCAGGACTACCAGTTATGTGAAGGGATAGATTTTGAAGAAATCATAAAATATGATGGACAGCTTCTGAAGAAGAAGTGTAGATCTACAAACCCATCTAAGAAATCATTTGTTATTAATACTGTCCCTGAAAAGGATAATCTAGCATCCCTATCAGTATATTTGGAAGATGGTTGGGACTTACTATATGTCCTGCATTTGTGGCCACCCCTTCTCATCCGGAACCTTCTTCCCTACAAGGTTGCTTCTTACATTGAGgtatgtagatccatagcacaagggaggtgatcaaagccaaggtgaacaaa Alignment from Spaln_nt2Genome ATCATCCCTTTCCCTGGTGCCAGAAGACCAGGACTACCAGCTATGTGAAGGAATCGACTTTGAAGAAATCATAAAATATGATGGACAGCTTCTGAAGAAGAAATGTAGATCTACAAACCCTTCTAAGAAATCATTTGTTATTAATATTGTCCCAGAAAAGGATAATTTGGCTTCCCTGTCAGTGTATTCGGAAGATGGTTGGGACTTACCATATGTCCTGCACTTGTGGCCACCCATCCTCATCCGGAACCTTCTTCCCTACAAAGTTGCTTATTACATTGAG acctagtgcttctgtaagatagctgtttaaaaaatctcttatctcaacagAACACCACTCCCACTAGTGCCAGAGGACCAGGACTACCAGTTATGTGAAGGGATAGATTTTGAAGAAATCATAAAATATGATGGACAGCTTCTGAAGAAGAAGTGTAGATCTACAAACCCATCTAAGAAATCATTTGTTATTAATACTGTCCCTGAAAAGGATAATCTAGCATCCCTATCAGTATATTTGGAAGATGGTTGGGACTTACTATATGTCCTGCATTTGTGGCCACCCCTTCTCATCCGGAACCTTCTTCCCTACAAGGTTGCTTCTTACATTGAGgtatgtagatccatagcacaagggaggtgatcaaagccaaggtgaacaaa Alignment from Pairagon ATCATCCCTTTCCCTGGTGCCAGAAGACCAGGACTACCAGCTATGTGAAGGAATCGACTTTGAAGAAATCATAAAATATGATGGACAGCTTCTGAAGAAGAAATGTAGATCTACAAACCCTTCTAAGAAATCATTTGTTATTAATATTGTCCCAGAAAAGGATAATTTGGCTTCCCTGTCAGTGTATTCGGAAGATGGTTGGGACTTACCATATGTCCTGCACTTGTGGCCACCCATCCTCATCCGGAACCTTCTTCCCTACAAAGTTGCTTATTACATTGAG acctagtgcttctgtaagatagctgtttaaaaaatctcttatctcaacagAACACCACTCCCACTAGTGCCAGAGGACCAGGACTACCAGTTATGTGAAGGGATAGATTTTGAAGAAATCATAAAATATGATGGACAGCTTCTGAAGAAGAAGTGTAGATCTACAAACCCATCTAAGAAATCATTTGTTATTAATACTGTCCCTGAAAAGGATAATCTAGCATCCCTATCAGTATATTTGGAAGATGGTTGGGACTTACTATATGTCCTGCATTTGTGGCCACCCCTTCTCATCCGGAACCTTCTTCCCTACAAGGTTGCTTCTTACATTGAGgtatgtagatccatagcacaagggaggtgatcaaagccaaggtgaacaaa Alignment from Exonerate_protein2genome acctagtgcttctgtaagatagctgtttaaaaaatctcttatctcaacagaacaccactcccactagtgccagaggaccaggactaccagttatgtgaagggatagattttgaagaaatcataaaatatgatggacagcttctgaagaagaagtgtagatctacaaacccatctaagaaatcatttgttattaatactgtccctgaaaaggataatctagcatccctatcagtatatttggaagatggttgggacttactatatgtcctgcatttgtggccaccccttctcatccggaaccttcttccctacaaggttgcttcttacattgaggtatgtagatccatagcacaagggaggtgatcaaagccaaggtgaacaaa Alignment from Exonerate_coding2genome acctagtgcttctgtaagatagctgtttaaaaaatctcttatctcaacagaacaccactcccactagtgccagaggaccaggactaccagttatgtgaagggatagattttgaagaaatcataaaatatgatggacagcttctgaagaagaagtgtagatctacaaacccatctaagaaatcatttgttattaatactgtccctgaaaaggataatctagcatccctatcagtatatttggaagatggttgggacttactatatgtcctgcatttgtggccaccccttctcatccggaaccttcttccctacaaggttgcttcttacattgaggtatgtagatccatagcacaagggaggtgatcaaagccaaggtgaacaaa Alignment from GeneWise ATCATCCCTTTCCCTGGTGCCAGAAGACCAGGACTACCAGCTATGTGAAGGAATCGACTTTGAAGAAATCATAAAATATGATGGACAGCTTCTGAAGAAGAAATGTAGATCTACAAACCCTTCTAAGAAATCATTTGTTATTAATATTGTCCCAGAAAAGGATAATTTGGCTTCCCTGTCAGTGTATTCGGAAGATGGTTGGGACTTACCATATGTCCTGCACTTGTGGCCACCCATCCTCATCCGGAACCTTCTTCCCTACAAAGTTGCTTATTACATTGAG acctagtgcttctgtaagatagctgtttaaaaaatctcttatctcaacagAACACCACTCCCACTAGTGCCAGAGGACCAGGACTACCAGTTATGTGAAGGGATAGATTTTGAAGAAATCATAAAATATGATGGACAGCTTCTGAAGAAGAAGTGTAGATCTACAAACCCATCTAAGAAATCATTTGTTATTAATACTGTCCCTGAAAAGGATAATCTAGCATCCCTATCAGTATATTTGGAAGATGGTTGGGACTTACTATATGTCCTGCATTTGTGGCCACCCCTTCTCATCCGGAACCTTCTTCCCTACAAGGTTGCTTCTTACATTGAGgtatgtagatccatagcacaagggaggtgatcaaagccaaggtgaacaaa #### Vps13a_ID4078_45 --> 2 - 0 Original Alignment cgCCTGCTAACCACTCTGTCGCTGACAAGATCCCTTTAACAAAAGTGGGACGCCGTCTGTACACTGTAAGACACAGAGAATCTGGGGTCGAAAGATCTATCATTTGTCAAATTGACACAGTTGAAGGAAGTAAGAAGGTAACAATCCGCTCACCAGTGCAG atcagcttgctttttagttcttaacacaaactatactgtcctcttaacagcaCCAGCTAACCACTCTGTTGCTGATGAGATTCCTTTGGCAAAGGTG---------CTGTACACTGTGAGACACCGTGAATCAGGGGCTAAAAGATCTATCATTTGTCAGCTTGATACAGTGGAAGGAAGTAAGAAAGTGGCAATCCATTCACTAGTACAGgtgagaagaataaacaccccaagggaatctatcctcagtctatccacagc Alignment from CESAR cgCCTGCTAACCACTCTGTCGCTGACAAGATCCCTTTAACAAAAGTGGGACGCCGTCTGTACACTGTAAGACACAGAGAATCTGGGGTCGAAAGATCTATCATTTGTCAAATTGACACAGTTGAAGGAAGTAAGAAGGTAACAATCCGCTCACCAGTGCAG atcagcttgctttttagttcttaacacaaactatactgtcctcttaacagcaCCAGCTAACCACTCTGTTGCTGATGAGATTCCTTTGGCAAAGGTG---------CTGTACACTGTGAGACACCGTGAATCAGGGGCTAAAAGATCTATCATTTGTCAGCTTGATACAGTGGAAGGAAGTAAGAAAGTGGCAATCCATTCACTAGTACAGgtgagaagaataaacaccccaagggaatctatcctcagtctatccacagc Alignment from Spaln_aa2Genome CGCCTGCTAACCACTCTGTCGCTGACAAGATCCCTTTAACAAAAGTGGGACGCCGTCTGTACACTGTAAGACACAGAGAATCTGGGGTCGAAAGATCTATCATTTGTCAAATTGACACAGTTGAAGGAAGTAAGAAGGTAACAATCCGCTCACCAGTGCAG atcagcttgctttttagttcttaacacaaactatactgtcctcttaacagCACCAGCTAACCACTCTGTTGCTGATGAGATTCCTTTGGCAAAGGTG---------CTGTACACTGTGAGACACCGTGAATCAGGGGCTAAAAGATCTATCATTTGTCAGCTTGATACAGTGGAAGGAAGTAAGAAAGTGGCAATCCATTCACTAGTACAGgtgagaagaataaacaccccaagggaatctatcctcagtctatccacagc Alignment from Spaln_nt2Genome CGCCTGCTAACCACTCTGTCGCTGACAAGATCCCTTTAACAAAAGTGGGACGCCGTCTGTACACTGTAAGACACAGAGAATCTGGGGTCGAAAGATCTATCATTTGTCAAATTGACACAGTTGAAGGAAGTAAGAAGGTAACAATCCGCTCACCAGTGCAG atcagcttgctttttagttcttaacacaaactatactgtcctcttaacagCACCAGCTAACCACTCTGTTGCTGATGAGATTCCTTTGGCAAAGGTG---------CTGTACACTGTGAGACACCGTGAATCAGGGGCTAAAAGATCTATCATTTGTCAGCTTGATACAGTGGAAGGAAGTAAGAAAGTGGCAATCCATTCACTAGTACAGgtgagaagaataaacaccccaagggaatctatcctcagtctatccacagc Alignment from Pairagon CGCCTGCTAACCACTCTGTCGCTGACAAGATCCCTTTAACAAAAGTGGGACGCCGTCTGTACACTGTAAGACACAGAGAATCTGGGGTCGAAAGATCTATCATTTGTCAAATTGACACAGTTGAAGGAAGTAAGAAGGTAACAATCCGCTCACCAGTGCAG atcagcttgctttttagttcttaacacaaactatactgtcctcttaacagCACCAGCTAACCACTCTGTTGCTGATGAGATTCCTTTGGCAAAGGTG---------CTGTACACTGTGAGACACCGTGAATCAGGGGCTAAAAGATCTATCATTTGTCAGCTTGATACAGTGGAAGGAAGTAAGAAAGTGGCAATCCATTCACTAGTACAGgtgagaagaataaacaccccaagggaatctatcctcagtctatccacagc Alignment from Exonerate_protein2genome CGCCTGCTAACCACTCTGTCGCTGACAAGATCCCTTTAACAAAAGTGGGACGCCGTCTGTACACTGTAAGACACAGAGAATCTGGGGTCGAAAGATCTATCATTTGTCAAATTGACACAGTTGAAGGAAGTAAGAAGGTAACAATCCGCTCACCAGTGCAG atcagcttgctttttagttcttaacacaaactatactgtcctcttaacagCACCAGCTAACCACTCTGTTGCTGATGAGATTCCTTTGGCAAAGGTG---------CTGTACACTGTGAGACACCGTGAATCAGGGGCTAAAAGATCTATCATTTGTCAGCTTGATACAGTGGAAGGAAGTAAGAAAGTGGCAATCCATTCACTAGTACAGgtgagaagaataaacaccccaagggaatctatcctcagtctatccacagc Alignment from Exonerate_coding2genome CGCCTGCTAACCACTCTGTCGCTGACAAGATCCCTTTAACAAAAGTGGGACGCCGTCTGTACACTGTAAGACACAGAGAATCTGGGGTCGAAAGATCTATCATTTGTCAAATTGACACAGTTGAAGGAAGTAAGAAGGTAACAATCCGCTCACCAGTGCAG atcagcttgctttttagttcttaacacaaactatactgtcctcttaacagCACCAGCTAACCACTCTGTTGCTGATGAGATTCCTTTGGCAAAGGTG---------CTGTACACTGTGAGACACCGTGAATCAGGGGCTAAAAGATCTATCATTTGTCAGCTTGATACAGTGGAAGGAAGTAAGAAAGTGGCAATCCATTCACTAGTACAGgtgagaagaataaacaccccaagggaatctatcctcagtctatccacagc Alignment from GeneWise CGCCTGCTAACCACTCTGTCGCTGACAAGATCCCTTTAACAAAAGTGGGACGCCGTCTGTACACTGTAAGACACAGAGAATCTGGGGTCGAAAGATCTATCATTTGTCAAATTGACACAGTTGAAGGAAGTAAGAAGGTAACAATCCGCTCACCAGTGCAG atcagcttgctttttagttcttaacacaaactatactgtcctcttaacagCACCAGCTAACCACTCTGTTGCTGATGAGATTCCTTTGGCAAAGGTG---------CTGTACACTGTGAGACACCGTGAATCAGGGGCTAAAAGATCTATCATTTGTCAGCTTGATACAGTGGAAGGAAGTAAGAAAGTGGCAATCCATTCACTAGTACAGgtgagaagaataaacaccccaagggaatctatcctcagtctatccacagc #### Vps13a_ID4084_39 --> 2 - 0 Original Alignment caCCTGCACAGGAATTAGGGAAGTGGGAAATGAATATTCTTATTAAAAATCCAGAGATTGTGTTTGTGGCTGACATGACAAGAAACGATGCTCCTGCCTTAGTCATTACGACACAGTGTGAAATTTGCTGCAAAGGTGAACCTACAAGCAATACAGTGACTGCTGCCATTAAAGATCTCCAAGTCAGAGCGTGCCCATTTCTTCCAGTCAAGAGAAAGGGCAAAGTCACCACT cacatgtagctgcccattcccacaagtactgttgtcctcttgtcttctagctCCTGCACAGGAATTAGGGAAGTGGGAAATGAACATCCTAATCAAAAATCCAGAGATCTTGTTCGTGGCTGACATGACAAGGAATGATGCTCCTGCCTTGGTCATTACAACAGAGTGTGAGATTTGTTGTAAAGGTGACCCTACAAGCAATGCTGTAACCGCAGCAACAAAAGATCTACAGGTAAGAGCATGTCCTTTTCTTCCAGTCAAGAGAAAGGGCAAAGTTACTACTgtaggattaagatccatactactaatttatattttattctgcaggcatta Alignment from CESAR caCCTGCACAGGAATTAGGGAAGTGGGAAATGAATATTCTTATTAAAAATCCAGAGATTGTGTTTGTGGCTGACATGACAAGAAACGATGCTCCTGCCTTAGTCATTACGACACAGTGTGAAATTTGCTGCAAAGGTGAACCTACAAGCAATACAGTGACTGCTGCCATTAAAGATCTCCAAGTCAGAGCGTGCCCATTTCTTCCAGTCAAGAGAAAGGGCAAAGTCACCACT cacatgtagctgcccattcccacaagtactgttgtcctcttgtcttctagctCCTGCACAGGAATTAGGGAAGTGGGAAATGAACATCCTAATCAAAAATCCAGAGATCTTGTTCGTGGCTGACATGACAAGGAATGATGCTCCTGCCTTGGTCATTACAACAGAGTGTGAGATTTGTTGTAAAGGTGACCCTACAAGCAATGCTGTAACCGCAGCAACAAAAGATCTACAGGTAAGAGCATGTCCTTTTCTTCCAGTCAAGAGAAAGGGCAAAGTTACTACTgtaggattaagatccatactactaatttatattttattctgcaggcatta Alignment from Spaln_aa2Genome CACCTGCACAGGAATTAGGGAAGTGGGAAATGAATATTCTTATTAAAAATCCAGAGATTGTGTTTGTGGCTGACATGACAAGAAACGATGCTCCTGCCTTAGTCATTACGACACAGTGTGAAATTTGCTGCAAAGGTGAACCTACAAGCAATACAGTGACTGCTGCCATTAAAGATCTCCAAGTCAGAGCGTGCCCATTTCTTCCAGTCAAGAGAAAGGGCAAAGTCACCACT cacatgtagctgcccattcccacaagtactgttgtcctcttgtcttctagCTCCTGCACAGGAATTAGGGAAGTGGGAAATGAACATCCTAATCAAAAATCCAGAGATCTTGTTCGTGGCTGACATGACAAGGAATGATGCTCCTGCCTTGGTCATTACAACAGAGTGTGAGATTTGTTGTAAAGGTGACCCTACAAGCAATGCTGTAACCGCAGCAACAAAAGATCTACAGGTAAGAGCATGTCCTTTTCTTCCAGTCAAGAGAAAGGGCAAAGTTACTACTgtaggattaagatccatactactaatttatattttattctgcaggcatta Alignment from Spaln_nt2Genome CACCTGCACAGGAATTAGGGAAGTGGGAAATGAATATTCTTATTAAAAATCCAGAGATTGTGTTTGTGGCTGACATGACAAGAAACGATGCTCCTGCCTTAGTCATTACGACACAGTGTGAAATTTGCTGCAAAGGTGAACCTACAAGCAATACAGTGACTGCTGCCATTAAAGATCTCCAAGTCAGAGCGTGCCCATTTCTTCCAGTCAAGAGAAAGGGCAAAGTCACCACT cacatgtagctgcccattcccacaagtactgttgtcctcttgtcttctagCTCCTGCACAGGAATTAGGGAAGTGGGAAATGAACATCCTAATCAAAAATCCAGAGATCTTGTTCGTGGCTGACATGACAAGGAATGATGCTCCTGCCTTGGTCATTACAACAGAGTGTGAGATTTGTTGTAAAGGTGACCCTACAAGCAATGCTGTAACCGCAGCAACAAAAGATCTACAGGTAAGAGCATGTCCTTTTCTTCCAGTCAAGAGAAAGGGCAAAGTTACTACTgtaggattaagatccatactactaatttatattttattctgcaggcatta Alignment from Pairagon CACCTGCACAGGAATTAGGGAAGTGGGAAATGAATATTCTTATTAAAAATCCAGAGATTGTGTTTGTGGCTGACATGACAAGAAACGATGCTCCTGCCTTAGTCATTACGACACAGTGTGAAATTTGCTGCAAAGGTGAACCTACAAGCAATACAGTGACTGCTGCCATTAAAGATCTCCAAGTCAGAGCGTGCCCATTTCTTCCAGTCAAGAGAAAGGGCAAAGTCACCACT cacatgtagctgcccattcccacaagtactgttgtcctcttgtcttctagCTCCTGCACAGGAATTAGGGAAGTGGGAAATGAACATCCTAATCAAAAATCCAGAGATCTTGTTCGTGGCTGACATGACAAGGAATGATGCTCCTGCCTTGGTCATTACAACAGAGTGTGAGATTTGTTGTAAAGGTGACCCTACAAGCAATGCTGTAACCGCAGCAACAAAAGATCTACAGGTAAGAGCATGTCCTTTTCTTCCAGTCAAGAGAAAGGGCAAAGTTACTACTgtaggattaagatccatactactaatttatattttattctgcaggcatta Alignment from Exonerate_protein2genome CACCTGCACAGGAATTAGGGAAGTGGGAAATGAATATTCTTATTAAAAATCCAGAGATTGTGTTTGTGGCTGACATGACAAGAAACGATGCTCCTGCCTTAGTCATTACGACACAGTGTGAAATTTGCTGCAAAGGTGAACCTACAAGCAATACAGTGACTGCTGCCATTAAAGATCTCCAAGTCAGAGCGTGCCCATTTCTTCCAGTCAAGAGAAAGGGCAAAGTCACCACT cacatgtagctgcccattcccacaagtactgttgtcctcttgtcttctagCTCCTGCACAGGAATTAGGGAAGTGGGAAATGAACATCCTAATCAAAAATCCAGAGATCTTGTTCGTGGCTGACATGACAAGGAATGATGCTCCTGCCTTGGTCATTACAACAGAGTGTGAGATTTGTTGTAAAGGTGACCCTACAAGCAATGCTGTAACCGCAGCAACAAAAGATCTACAGGTAAGAGCATGTCCTTTTCTTCCAGTCAAGAGAAAGGGCAAAGTTACTACTgtaggattaagatccatactactaatttatattttattctgcaggcatta Alignment from Exonerate_coding2genome CACCTGCACAGGAATTAGGGAAGTGGGAAATGAATATTCTTATTAAAAATCCAGAGATTGTGTTTGTGGCTGACATGACAAGAAACGATGCTCCTGCCTTAGTCATTACGACACAGTGTGAAATTTGCTGCAAAGGTGAACCTACAAGCAATACAGTGACTGCTGCCATTAAAGATCTCCAAGTCAGAGCGTGCCCATTTCTTCCAGTCAAGAGAAAGGGCAAAGTCACCACT cacatgtagctgcccattcccacaagtactgttgtcctcttgtcttctagCTCCTGCACAGGAATTAGGGAAGTGGGAAATGAACATCCTAATCAAAAATCCAGAGATCTTGTTCGTGGCTGACATGACAAGGAATGATGCTCCTGCCTTGGTCATTACAACAGAGTGTGAGATTTGTTGTAAAGGTGACCCTACAAGCAATGCTGTAACCGCAGCAACAAAAGATCTACAGGTAAGAGCATGTCCTTTTCTTCCAGTCAAGAGAAAGGGCAAAGTTACTACTgtaggattaagatccatactactaatttatattttattctgcaggcatta Alignment from GeneWise CACCTGCACAGGAATTAGGGAAGTGGGAAATGAATATTCTTATTAAAAATCCAGAGATTGTGTTTGTGGCTGACATGACAAGAAACGATGCTCCTGCCTTAGTCATTACGACACAGTGTGAAATTTGCTGCAAAGGTGAACCTACAAGCAATACAGTGACTGCTGCCATTAAAGATCTCCAAGTCAGAGCGTGCCCATTTCTTCCAGTCAAGAGAAAGGGCAAAGTCACCACT cacatgtagctgcccattcccacaagtactgttgtcctcttgtcttctagCTCCTGCACAGGAATTAGGGAAGTGGGAAATGAACATCCTAATCAAAAATCCAGAGATCTTGTTCGTGGCTGACATGACAAGGAATGATGCTCCTGCCTTGGTCATTACAACAGAGTGTGAGATTTGTTGTAAAGGTGACCCTACAAGCAATGCTGTAACCGCAGCAACAAAAGATCTACAGGTAAGAGCATGTCCTTTTCTTCCAGTCAAGAGAAAGGGCAAAGTTACTACTgtaggattaagatccatactactaatttatattttattctgcaggcatta #### Vps13a_ID4094_29 --> 0 - 1 Original Alignment GTGAATTTTTCCTCTTTGGATATTCATTTACACACTGAAGCACTTCTGAATACAATGAATTATCTTAATAATATTCTTCCGGAATTAAGGGAAAAATCTGCCTCGGTGTCTGCTGCAGAGCCGGAAGACAAAGGGGACATCATTAAAAAACTTg tgctggttctgtcttggtcagttctttgcatgctgtcccttttcttccagGTCAATTTTTCTTCTTTGGATGTCCATCTACAG---------CTCCTGAGTACAATGAACTACCTTAATAATATTCTTCCAGAATTACAACAGAAAGCAGCCTCAGTGTCAGCTGCTCAACCAGAGGACAAGGGGGACATAATTAAGAAGCTAggtaacgcacttttataactaaggtagaccacttgaccataaccacctgcc Alignment from CESAR GTGAATTTTTCCTCTTTGGATATTCATTTACACACTGAAGCACTTCTGAATACAATGAATTATCTTAATAATATTCTTCCGGAATTAAGGGAAAAATCTGCCTCGGTGTCTGCTGCAGAGCCGGAAGACAAAGGGGACATCATTAAAAAACTTg tgctggttctgtcttggtcagttctttgcatgctgtcccttttcttccagGTCAATTTTTCTTCTTTGGATGTCCATCTACAG---------CTCCTGAGTACAATGAACTACCTTAATAATATTCTTCCAGAATTACAACAGAAAGCAGCCTCAGTGTCAGCTGCTCAACCAGAGGACAAGGGGGACATAATTAAGAAGCTAggtaacgcacttttataactaaggtagaccacttgaccataaccacctgcc Alignment from Spaln_aa2Genome GTGAATTTTTCCTCTTTGGATATTCATTTACACACTGAAGCACTTCTGAATACAATGAATTATCTTAATAATATTCTTCCGGAATTAAGGGAAAAATCTGCCTCGGTGTCTGCTGCAGAGCCGGAAGACAAAGGGGACATCATTAAAAAACTTG tgctggttctgtcttggtcagttctttgcatgctgtcccttttcttccagGTCAATTTTTCTTCTTTGGATGTCCATCTACAG---------CTCCTGAGTACAATGAACTACCTTAATAATATTCTTCCAGAATTACAACAGAAAGCAGCCTCAGTGTCAGCTGCTCAACCAGAGGACAAGGGGGACATAATTAAGAAGCTAGgtaacgcacttttataactaaggtagaccacttgaccataaccacctgcc Alignment from Spaln_nt2Genome GTGAATTTTTCCTCTTTGGATATTCATTTACACACTGAAGCACTTCTGAATACAATGAATTATCTTAATAATATTCTTCCGGAATTAAGGGAAAAATCTGCCTCGGTGTCTGCTGCAGAGCCGGAAGACAAAGGGGACATCATTAAAAAACTTG tgctggttctgtcttggtcagttctttgcatgctgtcccttttcttccagGTCAATTTTTCTTCTTTGGATGTCCATCTACA---------GCTCCTGAGTACAATGAACTACCTTAATAATATTCTTCCAGAATTACAACAGAAAGCAGCCTCAGTGTCAGCTGCTCAACCAGAGGACAAGGGGGACATAATTAAGAAGCTAGgtaacgcacttttataactaaggtagaccacttgaccataaccacctgcc Alignment from Pairagon GTGAATTTTTCCTCTTTGGATATTCATTTACACACTGAAGCACTTCTGAATACAATGAATTATCTTAATAATATTCTTCCGGAATTAAGGGAAAAATCTGCCTCGGTGTCTGCTGCAGAGCCGGAAGACAAAGGGGACATCATTAAAAAACTTG tgctggttctgtcttggtcagttctttgcatgctgtcccttttcttccagGTCAATTTTTCTTCTTTGGATGTCCATCTACA---------GCTCCTGAGTACAATGAACTACCTTAATAATATTCTTCCAGAATTACAACAGAAAGCAGCCTCAGTGTCAGCTGCTCAACCAGAGGACAAGGGGGACATAATTAAGAAGCTAGgtaacgcacttttataactaaggtagaccacttgaccataaccacctgcc Alignment from Exonerate_protein2genome GTGAATTTTTCCTCTTTGGATATTCATTTACACACTGAAGCACTTCTGAATACAATGAATTATCTTAATAATATTCTTCCGGAATTAAGGGAAAAATCTGCCTCGGTGTCTGCTGCAGAGCCGGAAGACAAAGGGGACATCATTAAAAAACTTG tgctggttctgtcttggtcagttctttgcatgctgtcccttttcttccagGTCAATTTTTCTTCTTTGGATGTCCATCTACAG---------CTCCTGAGTACAATGAACTACCTTAATAATATTCTTCCAGAATTACAACAGAAAGCAGCCTCAGTGTCAGCTGCTCAACCAGAGGACAAGGGGGACATAATTAAGAAGCTAGgtaacgcacttttataactaaggtagaccacttgaccataaccacctgcc Alignment from Exonerate_coding2genome GTGAATTTTTCCTCTTTGGATATTCATTTACACACTGAAGCACTTCTGAATACAATGAATTATCTTAATAATATTCTTCCGGAATTAAGGGAAAAATCTGCCTCGGTGTCTGCTGCAGAGCCGGAAGACAAAGGGGACATCATTAAAAAACTTG tgctggttctgtcttggtcagttctttgcatgctgtcccttttcttccagGTCAATTTTTCTTCTTTGGATGTCCATCTACAG---------CTCCTGAGTACAATGAACTACCTTAATAATATTCTTCCAGAATTACAACAGAAAGCAGCCTCAGTGTCAGCTGCTCAACCAGAGGACAAGGGGGACATAATTAAGAAGCTAGgtaacgcacttttataactaaggtagaccacttgaccataaccacctgcc Alignment from GeneWise GTGAATTTTTCCTCTTTGGATATTCATTTACACACTGAAGCACTTCTGAATACAATGAATTATCTTAATAATATTCTTCCGGAATTAAGGGAAAAATCTGCCTCGGTGTCTGCTGCAGAGCCGGAAGACAAAGGGGACATCATTAAAAAACTTG tgctggttctgtcttggtcagttctttgcatgctgtcccttttcttccagGTCAATTTTTCTTCTTTGGATGTCCATCTACAG---------CTCCTGAGTACAATGAACTACCTTAATAATATTCTTCCAGAATTACAACAGAAAGCAGCCTCAGTGTCAGCTGCTCAACCAGAGGACAAGGGGGACATAATTAAGAAGCTAGgtaacgcacttttataactaaggtagaccacttgaccataaccacctgcc #### Vps13a_ID4096_27 --> 2 - 0 Original Alignment atGAAAACAAGAAACCAGTTTATTTGATCACGACCCTGGATAACACAATGGAAGATTTATTAACATTGGAATTCATGAAG taagagccaatgataaacccaacaagattaacttttccttttgttttgagatGAAAACAAAAAGCCAGTCTATTTGATCACCACCCAAGACAATACAATGGAGGAATTGTTAACATTAGAGTTCATGAAGgtgagtggttttgtattactttggttgtcatacagatttctaaattccaa Alignment from CESAR atGAAAACAAGAAACCAGTTTATTTGATCACGACCCTGGATAACACAATGGAAGATTTATTAACATTGGAATTCATGAAG taagagccaatgataaacccaacaagattaacttttccttttgttttgagatGAAAACAAAAAGCCAGTCTATTTGATCACCACCCAAGACAATACAATGGAGGAATTGTTAACATTAGAGTTCATGAAGgtgagtggttttgtattactttggttgtcatacagatttctaaattccaa Alignment from Spaln_aa2Genome ATGAAAACAAGAAACCAGTTTATTTGATCACGACCCTGGATAACACAATGGAAGATTTATTAACATTGGAATTCATGAAG taagagccaatgataaacccaacaagattaacttttccttttgttttgagATGAAAACAAAAAGCCAGTCTATTTGATCACCACCCAAGACAATACAATGGAGGAATTGTTAACATTAGAGTTCATGAAGgtgagtggttttgtattactttggttgtcatacagatttctaaattccaa Alignment from Spaln_nt2Genome ATGAAAACAAGAAACCAGTTTATTTGATCACGACCCTGGATAACACAATGGAAGATTTATTAACATTGGAATTCATGAAG taagagccaatgataaacccaacaagattaacttttccttttgttttgagATGAAAACAAAAAGCCAGTCTATTTGATCACCACCCAAGACAATACAATGGAGGAATTGTTAACATTAGAGTTCATGAAGgtgagtggttttgtattactttggttgtcatacagatttctaaattccaa Alignment from Pairagon ATGAAAACAAGAAACCAGTTTATTTGATCACGACCCTGGATAACACAATGGAAGATTTATTAACATTGGAATTCATGAAG taagagccaatgataaacccaacaagattaacttttccttttgttttgagATGAAAACAAAAAGCCAGTCTATTTGATCACCACCCAAGACAATACAATGGAGGAATTGTTAACATTAGAGTTCATGAAGgtgagtggttttgtattactttggttgtcatacagatttctaaattccaa Alignment from Exonerate_protein2genome ATGAAAACAAGAAACCAGTTTATTTGATCACGACCCTGGATAACACAATGGAAGATTTATTAACATTGGAATTCATGAAG taagagccaatgataaacccaacaagattaacttttccttttgttttgagATGAAAACAAAAAGCCAGTCTATTTGATCACCACCCAAGACAATACAATGGAGGAATTGTTAACATTAGAGTTCATGAAGgtgagtggttttgtattactttggttgtcatacagatttctaaattccaa Alignment from Exonerate_coding2genome ATGAAAACAAGAAACCAGTTTATTTGATCACGACCCTGGATAACACAATGGAAGATTTATTAACATTGGAATTCATGAAG taagagccaatgataaacccaacaagattaacttttccttttgttttgagATGAAAACAAAAAGCCAGTCTATTTGATCACCACCCAAGACAATACAATGGAGGAATTGTTAACATTAGAGTTCATGAAGgtgagtggttttgtattactttggttgtcatacagatttctaaattccaa Alignment from GeneWise ATGAAAACAAGAAACCAGTTTATTTGATCACGACCCTGGATAACACAATGGAAGATTTATTAACATTGGAATTCATGAAG taagagccaatgataaacccaacaagattaacttttccttttgttttgagATGAAAACAAAAAGCCAGTCTATTTGATCACCACCCAAGACAATACAATGGAGGAATTGTTAACATTAGAGTTCATGAAGgtgagtggttttgtattactttggttgtcatacagatttctaaattccaa #### Vps13a_ID4099_24 --> 0 - 1 Original Alignment ATTCAAGCATCTGCTTTGCCAGTATCA---CACATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATg caaaatttatagaggagtttttcctgtaaacttaaactttgccgttgcagATC---GCATTCACTTTCCCAGTGTCACATCATGTCTCTAAGGAACTGATACCTTCACTCAAACATCCT------GAAGATggtaactataagccccatgaccaggacactatatgcaggtctactctatat Alignment from CESAR ATTCAAGCATCTGCTTTGCCAGTATCACAC---ATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATg caaaatttatagaggagtttttcctgtaaacttaaactttgccgttgcagATC---GCATTCACTTTCCCAGTGTCACATCATGTCTCTAAGGAACTGATACCTTCACTCAAACATCCT------GAAGATggtaactataagccccatgaccaggacactatatgcaggtctactctatat Alignment from Spaln_aa2Genome ATTCAAGCATCTGCTTTGCCAGTATCA---CACATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATG caaaatttatagaggagtttttcctgtaaacttaaactttgccgttgcagATC---GCATTCACTTTCCCAGTGTCACATCATGTCTCTAAGGAACTGATACCTTCACTCAAACATCCT------GAAGATGgtaactataagccccatgaccaggacactatatgcaggtctactctatat Alignment from Spaln_nt2Genome AA-GCATCTGCTTTGCCAGTATCACA-CATTTCTC--AGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATG caaaatttatagaggagtttttcctgtaaacttaaactttgccgttgcagATCGCATTCACTTTCCCAGTGTCACATCATGTCTCTAAGGAACTGATACCTTCACTCAAACA------TCCTGAAGATGgtaactataagccccatgaccaggacactatatgcaggtctactctatat Alignment from Pairagon ----------------------------------ATTCAAGCATCTGCTTTGCCAGTATCACACATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATG caaaatttatagaggagtttttcctgtaaacttaaactttgccgttgcagatcgcattcactttcccagTGTCACATCATGTCTCTAAGGAACTGATACCTTCACTCAAACATC-----------------------------------------------------------CTGAAGATGgtaactataagccccatgaccaggacactatatgcaggtctactctatat Alignment from Exonerate_protein2genome caaaatttatagaggagtttttcctgtaaacttaaactttgccgttgcagatcgcattcactttcccagtgtcacatcatgtctctaaggaactgataccttcactcaaacatcctgaagatggtaactataagccccatgaccaggacactatatgcaggtctactctatat Alignment from Exonerate_coding2genome caaaatttatagaggagtttttcctgtaaacttaaactttgccgttgcagatcgcattcactttcccagtgtcacatcatgtctctaaggaactgataccttcactcaaacatcctgaagatggtaactataagccccatgaccaggacactatatgcaggtctactctatat Alignment from GeneWise caaaatttatagaggagtttttcctgtaaacttaaactttgccgttgcagatcgcattcactttcccagtgtcacatcatgtctctaaggaactgataccttcactcaaacatcctgaagatggtaactataagccccatgaccaggacactatatgcaggtctactctatat #### Vps13a_ID4100_23 --> 1 - 0 Original Alignment aTTCAAGATTTCTGGAAAGTTACCTCTTGTTTCATTACGAATTTCGGATAAAAAACTGCAAGGCATTATGGAGTTGTTGGGAAGCATTCCAAAGCCTGAACCTGTAACTGATGTATCTGCCCCTGCCAGATCATTCCAG aatgagaacatgaaataaatctacttagttttctttttttaaatcttcagaCACAAGATTTCTGGC------CCACTTGTCTCCTTACAAATATCTGATATAAAATTACAGGGTAATATGGAATTGTTTGGCAGCATTCCTAAACCCAAGCCTGTTTCTGATGTATCTGCTCCTGCCAGATCATACCAAgtgagtgtaggtggttgctatcttgcttactgcatgtgttagtttgtatc Alignment from CESAR aTTCAAGATTTCTGGAAAGTTACCTCTTGTTTCATTACGAATTTCGGATAAAAAACTGCAAGGCATTATGGAGTTGTTGGGAAGCATTCCAAAGCCTGAACCTGTAACTGATGTATCTGCCCCTGCCAGATCATTCCAG aatgagaacatgaaataaatctacttagttttctttttttaaatcttcagaCACAAGATTTCTGGC------CCACTTGTCTCCTTACAAATATCTGATATAAAATTACAGGGTAATATGGAATTGTTTGGCAGCATTCCTAAACCCAAGCCTGTTTCTGATGTATCTGCTCCTGCCAGATCATACCAAgtgagtgtaggtggttgctatcttgcttactgcatgtgttagtttgtatc Alignment from Spaln_aa2Genome ATTCAAGATTTCTGGAAAGTTACCTCTTGTTTCATTACGAATTTCGGATAAAAAACTGCAAGGCATTATGGAGTTGTTGGGAAGCATTCCAAAGCCTGAACCTGTAACTGATGTATCTGCCCCTGCCAGATCATTCCAG aatgagaacatgaaataaatctacttagttttctttttttaaatcttcagACACAAGATTTCTGGC------CCACTTGTCTCCTTACAAATATCTGATATAAAATTACAGGGTAATATGGAATTGTTTGGCAGCATTCCTAAACCCAAGCCTGTTTCTGATGTATCTGCTCCTGCCAGATCATACCAAgtgagtgtaggtggttgctatcttgcttactgcatgtgttagtttgtatc Alignment from Spaln_nt2Genome ATTCAAGATTTCTGGAAAGTTACCTCTTGTTTCATTACGAATTTCGGATAAAAAACTGCAAGGCATTATGGAGTTGTTGGGAAGCATTCCAAAGCCTGAACCTGTAACTGATGTATCTGCCCCTGCCAGATCATTCCAG aatgagaacatgaaataaatctacttagttttctttttttaaatcttcagACACAAGATTTCTGG------CCCACTTGTCTCCTTACAAATATCTGATATAAAATTACAGGGTAATATGGAATTGTTTGGCAGCATTCCTAAACCCAAGCCTGTTTCTGATGTATCTGCTCCTGCCAGATCATACCAAgtgagtgtaggtggttgctatcttgcttactgcatgtgttagtttgtatc Alignment from Pairagon ATTCAAGATTTCTGGAAAGTTACCTCTTGTTTCATTACGAATTTCGGATAAAAAACTGCAAGGCATTATGGAGTTGTTGGGAAGCATTCCAAAGCCTGAACCTGTAACTGATGTATCTGCCCCTGCCAGATCATTCCAG aatgagaacatgaaataaatctacttagttttctttttttaaatcttcagACACAAGATTTCTGG------CCCACTTGTCTCCTTACAAATATCTGATATAAAATTACAGGGTAATATGGAATTGTTTGGCAGCATTCCTAAACCCAAGCCTGTTTCTGATGTATCTGCTCCTGCCAGATCATACCAAgtgagtgtaggtggttgctatcttgcttactgcatgtgttagtttgtatc Alignment from Exonerate_protein2genome aatgagaacatgaaataaatctacttagttttctttttttaaatcttcagacacaagatttctggcccacttgtctccttacaaatatctgatataaaattacagggtaatatggaattgtttggcagcattcctaaacccaagcctgtttctgatgtatctgctcctgccagatcataccaagtgagtgtaggtggttgctatcttgcttactgcatgtgttagtttgtatc Alignment from Exonerate_coding2genome ATGCCCAAATTCAAGATTTCTGGAAAGTTACCTCTTGTTTCATTACGAATTTCGGATAAAAAACTGCAAGGCATTATGGAGTTGTTGGGAAGCATTCCAAAGCCTGAACCTGTAACTGATGTATCTGCCCCTGCCAGATCATTCCAGATTCAA aatgagaacatgaaataaatctacttagttttctttttttaaATCTTCAGACACAAGATTTCTGG------CCCACTTGTCTCCTTACAAATATCTGATATAAAATTACAGGGTAATATGGAATTGTTTGGCAGCATTCCTAAACCCAAGCCTGTTTCTGATGTATCTGCTCCTGCCAGATCATACCAAGTGAGTgtaggtggttgctatcttgcttactgcatgtgttagtttgtatc Alignment from GeneWise ATTCAAGATTTCTGGAAAGTTACCTCTTGTTTCATTACGAATTTCGGATAAAAAACTGCAAGGCATTATGGAGTTGTTGGGAAGCATTCCAAAGCCTGAACCTGTAACTGATGTATCTGCCCCTGCCAGATCATTCCAGATTCAA aatgagaacatgaaataaatctacttagttttctttttttaaatcttcagACACAAGATTTCTGGC------CCACTTGTCTCCTTACAAATATCTGATATAAAATTACAGGGTAATATGGAATTGTTTGGCAGCATTCCTAAACCCAAGCCTGTTTCTGATGTATCTGCTCCTGCCAGATCATACCAAGTGAGTgtaggtggttgctatcttgcttactgcatgtgttagtttgtatc #### Vps13a_ID4104_19 --> 0 - 1 Original Alignment AGGACAGTCAATAGTATAGTGGAGTTCTTCAGACCTCCGAAAGATGTCCATCTAGCCCAACTTACTTCAGTAACTTTGACAAAACTTGAAGAATTTCGAGCAAAAACAGCAACAg gctactttgtaattatctgtgactctcttagtctttctcttctcttgcagAAGACAGTTAAT---TTAGTGGAATTCTTCAGGCCACCAAAAGATGTTCATATCACCCAGCTCACATTTGCAACCCTGTCAACACTGGAAGAATTCCGTGCCAAAATCGCAACAggtaagttcccaattaaagcaatggcaaatgagagactttaagtcttagct Alignment from CESAR AGGACAGTCAATAGTATAGTGGAGTTCTTCAGACCTCCGAAAGATGTCCATCTAGCCCAACTTACTTCAGTAACTTTGACAAAACTTGAAGAATTTCGAGCAAAAACAGCAACAg gctactttgtaattatctgtgactctcttagtctttctcttctcttgcagAAGACAGTTAAT---TTAGTGGAATTCTTCAGGCCACCAAAAGATGTTCATATCACCCAGCTCACATTTGCAACCCTGTCAACACTGGAAGAATTCCGTGCCAAAATCGCAACAggtaagttcccaattaaagcaatggcaaatgagagactttaagtcttagct Alignment from Spaln_aa2Genome AGGACAGTCAATAGTATAGTGGAGTTCTTCAGACCTCCGAAAGATGTCCATCTAGCCCAACTTACTTCAGTAACTTTGACAAAACTTGAAGAATTTCGAGCAAAAACAGCAACAG gctactttgtaattatctgtgactctcttagtctttctcttctcttgcagAAGACAGTTAAT---TTAGTGGAATTCTTCAGGCCACCAAAAGATGTTCATATCACCCAGCTCACATTTGCAACCCTGTCAACACTGGAAGAATTCCGTGCCAAAATCGCAACAGgtaagttcccaattaaagcaatggcaaatgagagactttaagtcttagct Alignment from Spaln_nt2Genome AGGACAGTCAATAGTATAGTGGAGTTCTTCAGACCTCCGAAAGATGTCCATCTAGCCCAACTTACTTCAGTAACTTTGACAAAACTTGAAGAATTTCGAGCAAAAACAGCAACAG gctactttgtaattatctgtgactctcttagtctttctcttctcttgcagAAGACAGT---TAATTTAGTGGAATTCTTCAGGCCACCAAAAGATGTTCATATCACCCAGCTCACATTTGCAACCCTGTCAACACTGGAAGAATTCCGTGCCAAAATCGCAACAGgtaagttcccaattaaagcaatggcaaatgagagactttaagtcttagct Alignment from Pairagon AGGACAGTCAATAGTATAGTGGAGTTCTTCAGACCTCCGAAAGATGTCCATCTAGCCCAACTTACTTCAGTAACTTTGACAAAACTTGAAGAATTTCGAGCAAAAACAGCAACAG gctactttgtaattatctgtgactctcttagtctttctcttctcttgcagAAGACAGTTAA---TTTAGTGGAATTCTTCAGGCCACCAAAAGATGTTCATATCACCCAGCTCACATTTGCAACCCTGTCAACACTGGAAGAATTCCGTGCCAAAATCGCAACAGgtaagttcccaattaaagcaatggcaaatgagagactttaagtcttagct Alignment from Exonerate_protein2genome AGGACAGTCAATAGTATAGTGGAGTTCTTCAGACCTCCGAAAGATGTCCATCTAGCCCAACTTACTTCAGTAACTTTGACAAAACTTGAAGAATTTCGAGCAAAAACAGCAACAG gctactttgtaattatctgtgactctcttagtctttctcttctcttgcagAAGACAGTTAAT---TTAGTGGAATTCTTCAGGCCACCAAAAGATGTTCATATCACCCAGCTCACATTTGCAACCCTGTCAACACTGGAAGAATTCCGTGCCAAAATCGCAACAGgtaagttcccaattaaagcaatggcaaatgagagactttaagtcttagct Alignment from Exonerate_coding2genome gctactttgtaattatctgtgactctcttagtctttctcttctcttgcagaagacagttaatttagtggaattcttcaggccaccaaaagatgttcatatcacccagctcacatttgcaaccctgtcaacactggaagaattccgtgccaaaatcgcaacaggtaagttcccaattaaagcaatggcaaatgagagactttaagtcttagct Alignment from GeneWise AGGACAGTCAATAGTATAGTGGAGTTCTTCAGACCTCCGAAAGATGTCCATCTAGCCCAACTTACTTCAGTAACTTTGACAAAACTTGAAGAATTTCGAGCAAAAACAGCAACAG gctactttgtaattatctgtgactctcttagtctttctcttctcttgcagAAGACAGTTAAT---TTAGTGGAATTCTTCAGGCCACCAAAAGATGTTCATATCACCCAGCTCACATTTGCAACCCTGTCAACACTGGAAGAATTCCGTGCCAAAATCGCAACAGgtaagttcccaattaaagcaatggcaaatgagagactttaagtcttagct #### Vps13a_ID4105_18 --> 1 - 0 Original Alignment aTTTGAAACCAAAATTGATTCATTTCATATTACTGGCTTA---CCAGATGATTTCAAAAAACCCCACCTACTGTCTTCATTGGATGATACGTCACTCCTCCAGATTACATTTGAGATAAATCCTTTAAATGAAACTGTTGCTCAGAGGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATATGATGCA tttcttcaatctcatatgtactggccccacacaagtcctctctgccccagaTTTGAAACAAAAATAGATTCATTCGATATCACTGACTTACGTCCAGATGACTCCCAAAAACCTCACTTACTATCTTCACTGGATGATACACTTCTATTACAGATCACATTTGAGATAAATCCC------GAGATGGTGGCCCAAAAGTGCACCATAGAGGCTGAGCCTCTGGAAATAATATCCCATGCTgtgagtaattgtaagctcccagacctttcagtatgctactttgtaattat Alignment from CESAR aTTTGAAACCAAAATTGATTCATTTCATATTACTGGCTTA---CCAGATGATTTCAAAAAACCCCACCTACTGTCTTCATTGGATGATACGTCACTCCTCCAGATTACATTTGAGATAAATCCTTTAAATGAAACTGTTGCTCAGAGGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATATGATGCA tttcttcaatctcatatgtactggccccacacaagtcctctctgccccagaTTTGAAACAAAAATAGATTCATTCGATATCACTGACTTACGTCCAGATGACTCCCAAAAACCTCACTTACTATCTTCACTGGATGATACACTTCTATTACAGATCACATTTGAGATAAATCCC------GAGATGGTGGCCCAAAAGTGCACCATAGAGGCTGAGCCTCTGGAAATAATATCCCATGCTgtgagtaattgtaagctcccagacctttcagtatgctactttgtaattat Alignment from Spaln_aa2Genome ATTTGAAACCAAAATTGATTCATTTCATATTACTGGCTTA---CCAGATGATTTCAAAAAACCCCACCTACTGTCTTCATTGGATGATACGTCACTCCTCCAGATTACATTTGAGATAAATCCTTTAAATGAAACTGTTGCTCAGAGGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATATGATGCA tttcttcaatctcatatgtactggccccacacaagtcctctctgccccagATTTGAAACAAAAATAGATTCATTCGATATCACTGACTTACGTCCAGATGACTCCCAAAAACCTCACTTACTATCTTCACTGGATGATACACTTCTATTACAGATCACATTTGAGATAAATCCC------GAGATGGTGGCCCAAAAGTGCACCATAGAGGCTGAGCCTCTGGAAATAATATCCCATGCTgtgagtaattgtaagctcccagacctttcagtatgctactttgtaattat Alignment from Spaln_nt2Genome ATTTGAAACCAAAATTGATTCATTTCATATTACTGGCTTAC---CAGATGATTTCAAAAAACCCCACCTACTGTCTTCATTGGATGATACGTCACTCCTCCAGATTACATTTGAGATAAATCCTTTAAATGAAACTGTTGCTCAGAGGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATATGATGCA tttcttcaatctcatatgtactggccccacacaagtcctctctgccccagATTTGAAACAAAAATAGATTCATTCGATATCACTGACTTACGTCCAGATGACTCCCAAAAACCTCACTTACTATCTTCACTGGATGATACACTTCTATTACAGATCACATTTGAGATAAATCC------CGAGATGGTGGCCCAAAAGTGCACCATAGAGGCTGAGCCTCTGGAAATAATATCCCATGCTgtgagtaattgtaagctcccagacctttcagtatgctactttgtaattat Alignment from Pairagon ATTTGAAACCAAAATTGATTCATTTCATATTACTGGCTTA---CCAGATGATTTCAAAAAACCCCACCTACTGTCTTCATTGGATGATACGTCACTCCTCCAGATTACATTTGAGATAAATCCTTTAAATGAAACTGTTGCTCAGAGGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATATGATGCA tttcttcaatctcatatgtactggccccacacaagtcctctctgccccagATTTGAAACAAAAATAGATTCATTCGATATCACTGACTTACGTCCAGATGACTCCCAAAAACCTCACTTACTATCTTCACTGGATGATACACTTCTATTACAGATCACATTTGAGATAAATCC------CGAGATGGTGGCCCAAAAGTGCACCATAGAGGCTGAGCCTCTGGAAATAATATCCCATGCTgtgagtaattgtaagctcccagacctttcagtatgctactttgtaattat Alignment from Exonerate_protein2genome ATTTGAAACCAAAATTGATTCATTTCATATTACTGGCTTA---CCAGATGATTTCAAAAAACCCCACCTACTGTCTTCATTGGATGATACGTCACTCCTCCAGATTACATTTGAGATAAATCCTTTAAATGAAACTGTTGCTCAGAGGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATATGATGCA tttcttcaatctcatatgtactggccccacacaagtcctctctgccccagATTTGAAACAAAAATAGATTCATTCGATATCACTGACTTACGTCCAGATGACTCCCAAAAACCTCACTTACTATCTTCACTGGATGATACACTTCTATTACAGATCACATTTGAGATAAATCCC------GAGATGGTGGCCCAAAAGTGCACCATAGAGGCTGAGCCTCTGGAAATAATATCCCATGCTgtgagtaattgtaagctcccagacctttcagtatgctactttgtaattat Alignment from Exonerate_coding2genome tttcttcaatctcatatgtactggccccacacaagtcctctctgccccagatttgaaacaaaaatagattcattcgatatcactgacttacgtccagatgactcccaaaaacctcacttactatcttcactggatgatacacttctattacagatcacatttgagataaatcccgagatggtggcccaaaagtgcaccatagaggctgagcctctggaaataatatcccatgctgtgagtaattgtaagctcccagacctttcagtatgctactttgtaattat Alignment from GeneWise ATTTGAAACCAAAATTGATTCATTTCATATTACTGGCTTA---CCAGATGATTTCAAAAAACCCCACCTACTGTCTTCATTGGATGATACGTCACTCCTCCAGATTACATTTGAGATAAATCCTTTAAATGAAACTGTTGCTCAGAGGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATATGATGCA tttcttcaatctcatatgtactggccccacacaagtcctctctgccccagATTTGAAACAAAAATAGATTCATTCGATATCACTGACTTACGTCCAGATGACTCCCAAAAACCTCACTTACTATCTTCACTGGATGATACACTTCTATTACAGATCACATTTGAGATAAATCCC------GAGATGGTGGCCCAAAAGTGCACCATAGAGGCTGAGCCTCTGGAAATAATATCCCATGCTgtgagtaattgtaagctcccagacctttcagtatgctactttgtaattat #### Vps13a_ID4110_13 --> 1 - 0 Original Alignment gTGGGCTTATGCTATACATAGTATTCTTGAAGTAAATGTTTGTCCCAGTTTACGGATGTGGTCGTGGGAGCATATTAGAAACCATAGATACAAAATGAAACGATACAGAGAATTTTATAAGAAAAAATTAACAAGTAAGAAGCCATCTCCTGAAATTCTCATGTCTTTGGAG atattacaaataatgaaggtgttctatcacaacatcctcccaccttacaggTGTGCTTATGCTATACATAGTATTCTTGAAGTAAATGTTTGTCCCAGTTTACAGATGTGGTCGTGGGAGCATATCAGAAACCATAGATACAAAATGAAACGATACAGAGAATTTTATAAGAAAAAATTAACCAGCAAGAAGCCATCGCCCGAAATTCTCATGTCTTTGGAGgttggcaaaaacttcattgaaagatatagtaagtaatctcttgggtgaga Alignment from CESAR gTGGGCTTATGCTATACATAGTATTCTTGAAGTAAATGTTTGTCCCAGTTTACGGATGTGGTCGTGGGAGCATATTAGAAACCATAGATACAAAATGAAACGATACAGAGAATTTTATAAGAAAAAATTAACAAGTAAGAAGCCATCTCCTGAAATTCTCATGTCTTTGGAG atattacaaataatgaaggtgttctatcacaacatcctcccaccttacaggTGTGCTTATGCTATACATAGTATTCTTGAAGTAAATGTTTGTCCCAGTTTACAGATGTGGTCGTGGGAGCATATCAGAAACCATAGATACAAAATGAAACGATACAGAGAATTTTATAAGAAAAAATTAACCAGCAAGAAGCCATCGCCCGAAATTCTCATGTCTTTGGAGgttggcaaaaacttcattgaaagatatagtaagtaatctcttgggtgaga Alignment from Spaln_aa2Genome GTGGGCTTATGCTATACATAGTATTCTTGAAGTAAATGTTTGTCCCAGTTTACGGATGTGGTCGTGGGAGCATATTAGAAACCATAGATACAAAATGAAACGATACAGAGAATTTTATAAGAAAAAATTAACAAGTAAGAAGCCATCTCCTGAAATTCTCATGTCTTTGGAG atattacaaataatgaaggtgttctatcacaacatcctcccaccttacagGTGTGCTTATGCTATACATAGTATTCTTGAAGTAAATGTTTGTCCCAGTTTACAGATGTGGTCGTGGGAGCATATCAGAAACCATAGATACAAAATGAAACGATACAGAGAATTTTATAAGAAAAAATTAACCAGCAAGAAGCCATCGCCCGAAATTCTCATGTCTTTGGAGgttggcaaaaacttcattgaaagatatagtaagtaatctcttgggtgaga Alignment from Spaln_nt2Genome GTGGGCTTATGCTATACATAGTATTCTTGAAGTAAATGTTTGTCCCAGTTTACGGATGTGGTCGTGGGAGCATATTAGAAACCATAGATACAAAATGAAACGATACAGAGAATTTTATAAGAAAAAATTAACAAGTAAGAAGCCATCTCCTGAAATTCTCATGTCTTTGGAG atattacaaataatgaaggtgttctatcacaacatcctcccaccttacagGTGTGCTTATGCTATACATAGTATTCTTGAAGTAAATGTTTGTCCCAGTTTACAGATGTGGTCGTGGGAGCATATCAGAAACCATAGATACAAAATGAAACGATACAGAGAATTTTATAAGAAAAAATTAACCAGCAAGAAGCCATCGCCCGAAATTCTCATGTCTTTGGAGgttggcaaaaacttcattgaaagatatagtaagtaatctcttgggtgaga Alignment from Pairagon GTGGGCTTATGCTATACATAGTATTCTTGAAGTAAATGTTTGTCCCAGTTTACGGATGTGGTCGTGGGAGCATATTAGAAACCATAGATACAAAATGAAACGATACAGAGAATTTTATAAGAAAAAATTAACAAGTAAGAAGCCATCTCCTGAAATTCTCATGTCTTTGGAG atattacaaataatgaaggtgttctatcacaacatcctcccaccttacagGTGTGCTTATGCTATACATAGTATTCTTGAAGTAAATGTTTGTCCCAGTTTACAGATGTGGTCGTGGGAGCATATCAGAAACCATAGATACAAAATGAAACGATACAGAGAATTTTATAAGAAAAAATTAACCAGCAAGAAGCCATCGCCCGAAATTCTCATGTCTTTGGAGgttggcaaaaacttcattgaaagatatagtaagtaatctcttgggtgaga Alignment from Exonerate_protein2genome GTGGGCTTATGCTATACATAGTATTCTTGAAGTAAATGTTTGTCCCAGTTTACGGATGTGGTCGTGGGAGCATATTAGAAACCATAGATACAAAATGAAACGATACAGAGAATTTTATAAGAAAAAATTAACAAGTAAGAAGCCATCTCCTGAAATTCTCATGTCTTTGGAG atattacaaataatgaaggtgttctatcacaacatcctcccaccttacagGTGTGCTTATGCTATACATAGTATTCTTGAAGTAAATGTTTGTCCCAGTTTACAGATGTGGTCGTGGGAGCATATCAGAAACCATAGATACAAAATGAAACGATACAGAGAATTTTATAAGAAAAAATTAACCAGCAAGAAGCCATCGCCCGAAATTCTCATGTCTTTGGAGgttggcaaaaacttcattgaaagatatagtaagtaatctcttgggtgaga Alignment from Exonerate_coding2genome atattacaaataatgaaggtgttctatcacaacatcctcccaccttacaggtgtgcttatgctatacatagtattcttgaagtaaatgtttgtcccagtttacagatgtggtcgtgggagcatatcagaaaccatagatacaaaatgaaacgatacagagaattttataagaaaaaattaaccagcaagaagccatcgcccgaaattctcatgtctttggaggttggcaaaaacttcattgaaagatatagtaagtaatctcttgggtgaga Alignment from GeneWise GTGGGCTTATGCTATACATAGTATTCTTGAAGTAAATGTTTGTCCCAGTTTACGGATGTGGTCGTGGGAGCATATTAGAAACCATAGATACAAAATGAAACGATACAGAGAATTTTATAAGAAAAAATTAACAAGTAAGAAGCCATCTCCTGAAATTCTCATGTCTTTGGAG atattacaaataatgaaggtgttctatcacaacatcctcccaccttacagGTGTGCTTATGCTATACATAGTATTCTTGAAGTAAATGTTTGTCCCAGTTTACAGATGTGGTCGTGGGAGCATATCAGAAACCATAGATACAAAATGAAACGATACAGAGAATTTTATAAGAAAAAATTAACCAGCAAGAAGCCATCGCCCGAAATTCTCATGTCTTTGGAGgttggcaaaaacttcattgaaagatatagtaagtaatctcttgggtgaga #### Vps13a_ID4115_8 --> 0 - 0 Original Alignment ACAACTGATCAATACTGGATCCCATGTTTACATGATAATACTGAAAAGCTAGTCCGGAAG aaatgtaacagtacatattgaacagccccccccaacaactccttccccagACAACTGATGCATACTGGGTCCCATGTCTACATGATAATTCTGAGAAATTAGTACGAAAGgtgatgaaactcataactcatgaatcagatggaaaattatcaataatgtt Alignment from CESAR ACAACTGATCAATACTGGATCCCATGTTTACATGATAATACTGAAAAGCTAGTCCGGAAG aaatgtaacagtacatattgaacagccccccccaacaactccttccccagACAACTGATGCATACTGGGTCCCATGTCTACATGATAATTCTGAGAAATTAGTACGAAAGgtgatgaaactcataactcatgaatcagatggaaaattatcaataatgtt Alignment from Spaln_aa2Genome ACAACTGATCAATACTGGATCCCATGTTTACATGATAATACTGAAAAGCTAGTCCGGAAG aaatgtaacagtacatattgaacagccccccccaacaactccttccccagACAACTGATGCATACTGGGTCCCATGTCTACATGATAATTCTGAGAAATTAGTACGAAAGgtgatgaaactcataactcatgaatcagatggaaaattatcaataatgtt Alignment from Spaln_nt2Genome ACAACTGATCAATACTGGATCCCATGTTTACATGATAATACTGAAAAGCTAGTCCGGAAG aaatgtaacagtacatattgaacagccccccccaacaactccttccccagACAACTGATGCATACTGGGTCCCATGTCTACATGATAATTCTGAGAAATTAGTACGAAAGgtgatgaaactcataactcatgaatcagatggaaaattatcaataatgtt Alignment from Pairagon ACAACTGATCAATACTGGATCCCATGTTTACATGATAATACTGAAAAGCTAGTCCGGAAG aaatgtaacagtacatattgaacagccccccccaacaactccttccccagACAACTGATGCATACTGGGTCCCATGTCTACATGATAATTCTGAGAAATTAGTACGAAAGgtgatgaaactcataactcatgaatcagatggaaaattatcaataatgtt Alignment from Exonerate_protein2genome ACAACTGATCAATACTGGATCCCATGTTTACATGATAATACTGAAAAGCTAGTCCGGAAG aaatgtaacagtacatattgaacagccccccccaacaactccttccccagACAACTGATGCATACTGGGTCCCATGTCTACATGATAATTCTGAGAAATTAGTACGAAAGgtgatgaaactcataactcatgaatcagatggaaaattatcaataatgtt Alignment from Exonerate_coding2genome aaatgtaacagtacatattgaacagccccccccaacaactccttccccagacaactgatgcatactgggtcccatgtctacatgataattctgagaaattagtacgaaaggtgatgaaactcataactcatgaatcagatggaaaattatcaataatgtt Alignment from GeneWise ACAACTGATCAATACTGGATCCCATGTTTACATGATAATACTGAAAAGCTAGTCCGGAAG aaatgtaacagtacatattgaacagccccccccaacaactccttccccagACAACTGATGCATACTGGGTCCCATGTCTACATGATAATTCTGAGAAATTAGTACGAAAGgtgatgaaactcataactcatgaatcagatggaaaattatcaataatgtt #### Vps13a_ID4117_6 --> 2 - 0 Original Alignment aaAAGCCTCGGGAGGAGAAACAGGACACG---------------TTTACAGAAAAGTTAGTTACTCAGATCATACAGAACCTTCAAGTGCAAATCTCCAGCATCCATATTCGTTATGAAGACGAT ctgctgttcacactctggcctgtatatctttaaatgtgtttactgggcagaaAAGCCCCGG---GAGGAACATGATACATTACGCTGGATGCTCTTCACAGAAAAGCTGGTTCCACAGATCATTCAAAACCTACAAGTCAAGATATCCAGTATACATATATGTTATAGAGATGATgtaagagcttattatggcaataataagaaagtaatccatcagtgaggtat Alignment from CESAR aaAAGCCTCGGGAGGAGAAACAGGACACG---------------TTTACAGAAAAGTTAGTTACTCAGATCATACAGAACCTTCAAGTGCAAATCTCCAGCATCCATATTCGTTATGAAGACGAT ctgctgttcacactctggcctgtatatctttaaatgtgtttactgggcagaaAAGCCCCGGGAGGAA---CATGATACATTACGCTGGATGCTCTTCACAGAAAAGCTGGTTCCACAGATCATTCAAAACCTACAAGTCAAGATATCCAGTATACATATATGTTATAGAGATGATgtaagagcttattatggcaataataagaaagtaatccatcagtgaggtat Alignment from Spaln_aa2Genome AAAAGCCTCGGGAGGAGAAACAGGAC------------ACGTTTACAGAAAAGTTAGTTACTCAGATCATACAGAACCTTCAAGTGCAAATCTCCAGCATCCATATTCGTTATGAAGACGAT ctgctgttcacactctggcctgtatatctttaaatgtgtttactgggcagAAAAGCCCCGGGAGGAACATGATACATTACGCTGGATGCTCTTCACAGAAAAGCTGGTTCCACAGATCATTCAAAACCTACAAGTCAAGATATCCAGTATACATATATGTTATAGAGATGATgtaagagcttattatggcaataataagaaagtaatccatcagtgaggtat Alignment from Spaln_nt2Genome AAAAGCCTCGGGAGGA----GAAACAGGACACG--------TTTACAGAAAAGTTAGTTACTCAGATCATACAGAACCTTCAAGTGCAAATCTCCAGCATCCATATTCGTTATGAAGACGAT ctgctgttcacactctggcctgtatatctttaaatgtgtttactgggcagAAAAGCCCCGGGAGGAACATGATACATTACGCTGGATGCTCTTCACAGAAAAGCTGGTTCCACAGATCATTCAAAACCTACAAGTCAAGATATCCAGTATACATATATGTTATAGAGATGATgtaagagcttattatggcaataataagaaagtaatccatcagtgaggtat Alignment from Pairagon AAAAGCCTCGGGAGGAGAAACAGGACACG--------------------TTTACAGAAAAGTTAGTTACTCAGATCATACAGAACCTTCAAGTGCAAATCTCCAGCATCCATATTCGTTATGAAGACGAT ctgctgttcacactctggcctgtatatctttaaatgtgtttactgggcagAAAAGCCCCGGGAGGA--------ACATGATACATTACGCTGGATGCTCTTCACAGAAAAGCTGGTTCCACAGATCATTCAAAACCTACAAGTCAAGATATCCAGTATACATATATGTTATAGAGATGATgtaagagcttattatggcaataataagaaagtaatccatcagtgaggtat Alignment from Exonerate_protein2genome AAAAGCCTCGGGAGGAGAAACAGGAC------------ACGTTTACAGAAAAGTTAGTTACTCAGATCATACAGAACCTTCAAGTGCAAATCTCCAGCATCCATATTCGTTATGAAGACGAT ctgctgttcacactctggcctgtatatctttaaatgtgtttactgggcagAAAAGCCCCGGGAGGAACATGATACATTACGCTGGATGCTCTTCACAGAAAAGCTGGTTCCACAGATCATTCAAAACCTACAAGTCAAGATATCCAGTATACATATATGTTATAGAGATGATgtaagagcttattatggcaataataagaaagtaatccatcagtgaggtat Alignment from Exonerate_coding2genome ctgctgttcacactctggcctgtatatctttaaatgtgtttactgggcagaaaagccccgggaggaacatgatacattacgctggatgctcttcacagaaaagctggttccacagatcattcaaaacctacaagtcaagatatccagtatacatatatgttatagagatgatgtaagagcttattatggcaataataagaaagtaatccatcagtgaggtat Alignment from GeneWise AAAAGCCTCGGGAGGAGAAACAGGACACG---------------TTTACAGAAAAGTTAGTTACTCAGATCATACAGAACCTTCAAGTGCAAATCTCCAGCATCCATATTCGTTATGAAGACGAT ctgctgttcacactctggcctgtatatctttaaatgtgtttactgggcagAAAAGCCCCGGGAGGAA---CATGATACATTACGCTGGATGCTCTTCACAGAAAAGCTGGTTCCACAGATCATTCAAAACCTACAAGTCAAGATATCCAGTATACATATATGTTATAGAGATGATgtaagagcttattatggcaataataagaaagtaatccatcagtgaggtat #### Vps13a_ID4118_5 --> 2 - 1 Original Alignment gaATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAAGTATTTGATAAAg tactgttcctgagtttaggcagtcctagttttttgtcttctctgtccaagggATACAGTATGATCCTATCAAAGAAGAGAAGCAACTCATGGAGATAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAGGTAGTTGATAAAggtaagagatcagtaggcaacagtttttcaactctccatgaatcaaggaca Alignment from CESAR gaATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAAGTATTTGATAAAg tactgttcctgagtttaggcagtcctagttttttgtcttctctgtccaagggATACAGTATGATCCTATCAAAGAAGAGAAGCAACTCATGGAGATAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAGGTAGTTGATAAAggtaagagatcagtaggcaacagtttttcaactctccatgaatcaaggaca Alignment from Spaln_aa2Genome GAATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAAGTATTTGATAAAG tactgttcctgagtttaggcagtcctagttttttgtcttctctgtccaagGGATACAGTATGATCCTATCAAAGAAGAGAAGCAACTCATGGAGATAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAGGTAGTTGATAAAGgtaagagatcagtaggcaacagtttttcaactctccatgaatcaaggaca Alignment from Spaln_nt2Genome GAATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAAGTATTTGATAAAG tactgttcctgagtttaggcagtcctagttttttgtcttctctgtccaagGGATACAGTATGATCCTATCAAAGAAGAGAAGCAACTCATGGAGATAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAGGTAGTTGATAAAGgtaagagatcagtaggcaacagtttttcaactctccatgaatcaaggaca Alignment from Pairagon GAATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAAGTATTTGATAAAG tactgttcctgagtttaggcagtcctagttttttgtcttctctgtccaagGGATACAGTATGATCCTATCAAAGAAGAGAAGCAACTCATGGAGATAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAGGTAGTTGATAAAGgtaagagatcagtaggcaacagtttttcaactctccatgaatcaaggaca Alignment from Exonerate_protein2genome GAATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAAGTATTTGATAAAG tactgttcctgagtttaggcagtcctagttttttgtcttctctgtccaagGGATACAGTATGATCCTATCAAAGAAGAGAAGCAACTCATGGAGATAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAGGTAGTTGATAAAGgtaagagatcagtaggcaacagtttttcaactctccatgaatcaaggaca Alignment from Exonerate_coding2genome tactgttcctgagtttaggcagtcctagttttttgtcttctctgtccaagggatacagtatgatcctatcaaagaagagaagcaactcatggagataaagcaacaggaactaaaaagaatagaaaaagcaaaacagaaggtagttgataaaggtaagagatcagtaggcaacagtttttcaactctccatgaatcaaggaca Alignment from GeneWise GAATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAAGTATTTGATAAAG tactgttcctgagtttaggcagtcctagttttttgtcttctctgtccaagGGATACAGTATGATCCTATCAAAGAAGAGAAGCAACTCATGGAGATAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAGGTAGTTGATAAAGgtaagagatcagtaggcaacagtttttcaactctccatgaatcaaggaca #### Vti1a_ID11634_3 --> 0 - 0 Original Alignment CTTGAACAGATGGATTTGGAAGTTCGAGAAATTCCACCCCAAAGTCGAGGAATGTATAGCAACAGGATGAGAAGCTACAAGCAAGAAATGGGGAAACTGGAAACGGATTTT tccaagacgtctggttctaggaaaaatatttcttgggggtggggaaacagCTTGAACCAATGGACTTGGAAGTTCGAGAAATTCCACCCCAAAGTCAAGGAATGTATAGCAACAGGATGCGAAGCTACAAGCAAGAAATGGGGAAACTACAAACAGATTTTgtaaggtcattcaatcatacctaatatgtacattgatgtggtttggtgaa Alignment from CESAR CTTGAACAGATGGATTTGGAAGTTCGAGAAATTCCACCCCAAAGTCGAGGAATGTATAGCAACAGGATGAGAAGCTACAAGCAAGAAATGGGGAAACTGGAAACGGATTTT tccaagacgtctggttctaggaaaaatatttcttgggggtggggaaacagCTTGAACCAATGGACTTGGAAGTTCGAGAAATTCCACCCCAAAGTCAAGGAATGTATAGCAACAGGATGCGAAGCTACAAGCAAGAAATGGGGAAACTACAAACAGATTTTgtaaggtcattcaatcatacctaatatgtacattgatgtggtttggtgaa Alignment from Spaln_aa2Genome CTTGAACAGATGGATTTGGAAGTTCGAGAAATTCCACCCCAAAGTCGAGGAATGTATAGCAACAGGATGAGAAGCTACAAGCAAGAAATGGGGAAACTGGAAACGGATTTT tccaagacgtctggttctaggaaaaatatttcttgggggtggggaaacagCTTGAACCAATGGACTTGGAAGTTCGAGAAATTCCACCCCAAAGTCAAGGAATGTATAGCAACAGGATGCGAAGCTACAAGCAAGAAATGGGGAAACTACAAACAGATTTTgtaaggtcattcaatcatacctaatatgtacattgatgtggtttggtgaa Alignment from Spaln_nt2Genome CTTGAACAGATGGATTTGGAAGTTCGAGAAATTCCACCCCAAAGTCGAGGAATGTATAGCAACAGGATGAGAAGCTACAAGCAAGAAATGGGGAAACTGGAAACGGATTTT tccaagacgtctggttctaggaaaaatatttcttgggggtggggaaacagCTTGAACCAATGGACTTGGAAGTTCGAGAAATTCCACCCCAAAGTCAAGGAATGTATAGCAACAGGATGCGAAGCTACAAGCAAGAAATGGGGAAACTACAAACAGATTTTgtaaggtcattcaatcatacctaatatgtacattgatgtggtttggtgaa Alignment from Pairagon CTTGAACAGATGGATTTGGAAGTTCGAGAAATTCCACCCCAAAGTCGAGGAATGTATAGCAACAGGATGAGAAGCTACAAGCAAGAAATGGGGAAACTGGAAACGGATTTT tccaagacgtctggttctaggaaaaatatttcttgggggtggggaaacagCTTGAACCAATGGACTTGGAAGTTCGAGAAATTCCACCCCAAAGTCAAGGAATGTATAGCAACAGGATGCGAAGCTACAAGCAAGAAATGGGGAAACTACAAACAGATTTTgtaaggtcattcaatcatacctaatatgtacattgatgtggtttggtgaa Alignment from Exonerate_protein2genome CTTGAACAGATGGATTTGGAAGTTCGAGAAATTCCACCCCAAAGTCGAGGAATGTATAGCAACAGGATGAGAAGCTACAAGCAAGAAATGGGGAAACTGGAAACGGATTTT tccaagacgtctggttctaggaaaaatatttcttgggggtggggaaacagCTTGAACCAATGGACTTGGAAGTTCGAGAAATTCCACCCCAAAGTCAAGGAATGTATAGCAACAGGATGCGAAGCTACAAGCAAGAAATGGGGAAACTACAAACAGATTTTgtaaggtcattcaatcatacctaatatgtacattgatgtggtttggtgaa Alignment from Exonerate_coding2genome CTTGAACAGATGGATTTGGAAGTTCGAGAAATTCCACCCCAAAGTCGAGGAATGTATAGCAACAGGATGAGAAGCTACAAGCAAGAAATGGGGAAACTGGAAACGGATTTT tccaagacgtctggttctaggaaaaatatttcttgggggtggggaaacagCTTGAACCAATGGACTTGGAAGTTCGAGAAATTCCACCCCAAAGTCAAGGAATGTATAGCAACAGGATGCGAAGCTACAAGCAAGAAATGGGGAAACTACAAACAGATTTTgtaaggtcattcaatcatacctaatatgtacattgatgtggtttggtgaa Alignment from GeneWise CTTGAACAGATGGATTTGGAAGTTCGAGAAATTCCACCCCAAAGTCGAGGAATGTATAGCAACAGGATGAGAAGCTACAAGCAAGAAATGGGGAAACTGGAAACGGATTTT tccaagacgtctggttctaggaaaaatatttcttgggggtggggaaacagCTTGAACCAATGGACTTGGAAGTTCGAGAAATTCCACCCCAAAGTCAAGGAATGTATAGCAACAGGATGCGAAGCTACAAGCAAGAAATGGGGAAACTACAAACAGATTTTgtaaggtcattcaatcatacctaatatgtacattgatgtggtttggtgaa #### Vti1a_ID11656_4 --> 0 - 0 Original Alignment AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG tcgatatccctggccacctagtgtatcatgtttttggtttctttcctcagAAAAGGTCACGGATAGCCTATAGTGACAAAGTACGGAATGAGCTCCTAGGGGACACTGGGAATTCTTCTGAGAACCAGgtgagtgccaagggaatatgttattattatcctaataatacatcttgggt Alignment from CESAR AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG tcgatatccctggccacctagtgtatcatgtttttggtttctttcctcagAAAAGGTCACGGATAGCCTATAGTGACAAAGTACGGAATGAGCTCCTAGGGGACACTGGGAATTCTTCTGAGAACCAGgtgagtgccaagggaatatgttattattatcctaataatacatcttgggt Alignment from Spaln_aa2Genome AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG tcgatatccctggccacctagtgtatcatgtttttggtttctttcctcagAAAAGGTCACGGATAGCCTATAGTGACAAAGTACGGAATGAGCTCCTAGGGGACACTGGGAATTCTTCTGAGAACCAGgtgagtgccaagggaatatgttattattatcctaataatacatcttgggt Alignment from Spaln_nt2Genome AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG tcgatatccctggccacctagtgtatcatgtttttggtttctttcctcagAAAAGGTCACGGATAGCCTATAGTGACAAAGTACGGAATGAGCTCCTAGGGGACACTGGGAATTCTTCTGAGAACCAGgtgagtgccaagggaatatgttattattatcctaataatacatcttgggt Alignment from Pairagon AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG tcgatatccctggccacctagtgtatcatgtttttggtttctttcctcagAAAAGGTCACGGATAGCCTATAGTGACAAAGTACGGAATGAGCTCCTAGGGGACACTGGGAATTCTTCTGAGAACCAGgtgagtgccaagggaatatgttattattatcctaataatacatcttgggt Alignment from Exonerate_protein2genome AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG tcgatatccctggccacctagtgtatcatgtttttggtttctttcctcagAAAAGGTCACGGATAGCCTATAGTGACAAAGTACGGAATGAGCTCCTAGGGGACACTGGGAATTCTTCTGAGAACCAGgtgagtgccaagggaatatgttattattatcctaataatacatcttgggt Alignment from Exonerate_coding2genome AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG tcgatatccctggccacctagtgtatcatgtttttggtttctttcctcagAAAAGGTCACGGATAGCCTATAGTGACAAAGTACGGAATGAGCTCCTAGGGGACACTGGGAATTCTTCTGAGAACCAGgtgagtgccaagggaatatgttattattatcctaataatacatcttgggt Alignment from GeneWise AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG tcgatatccctggccacctagtgtatcatgtttttggtttctttcctcagAAAAGGTCACGGATAGCCTATAGTGACAAAGTACGGAATGAGCTCCTAGGGGACACTGGGAATTCTTCTGAGAACCAGgtgagtgccaagggaatatgttattattatcctaataatacatcttgggt #### Vti1a_ID11708_6 --> 2 - 0 Original Alignment agCAAATCGGCCAAGAGATGTTGGAAAACCTGAGTCATGACAGAGAAAAGATACAGCGGGCACGTGACCGA aatacacccctaactacaatctacttagcatccttccatttctaccacagagCAAATTGGCCAAGAGATGCTAGAAAACTTAAGCCATGATCGAGAGATGATACAGCGGGCACGGGACAGGgtgagcacgcatcatccaccttttcactttccttgcatgttcactagtaa Alignment from CESAR agCAAATCGGCCAAGAGATGTTGGAAAACCTGAGTCATGACAGAGAAAAGATACAGCGGGCACGTGACCGA aatacacccctaactacaatctacttagcatccttccatttctaccacagagCAAATTGGCCAAGAGATGCTAGAAAACTTAAGCCATGATCGAGAGATGATACAGCGGGCACGGGACAGGgtgagcacgcatcatccaccttttcactttccttgcatgttcactagtaa Alignment from Spaln_aa2Genome AGCAAATCGGCCAAGAGATGTTGGAAAACCTGAGTCATGACAGAGAAAAGATACAGCGGGCACGTGACCGA aatacacccctaactacaatctacttagcatccttccatttctaccacagAGCAAATTGGCCAAGAGATGCTAGAAAACTTAAGCCATGATCGAGAGATGATACAGCGGGCACGGGACAGGgtgagcacgcatcatccaccttttcactttccttgcatgttcactagtaa Alignment from Spaln_nt2Genome AGCAAATCGGCCAAGAGATGTTGGAAAACCTGAGTCATGACAGAGAAAAGATACAGCGGGCACGTGACCGA aatacacccctaactacaatctacttagcatccttccatttctaccacagAGCAAATTGGCCAAGAGATGCTAGAAAACTTAAGCCATGATCGAGAGATGATACAGCGGGCACGGGACAGGgtgagcacgcatcatccaccttttcactttccttgcatgttcactagtaa Alignment from Pairagon AGCAAATCGGCCAAGAGATGTTGGAAAACCTGAGTCATGACAGAGAAAAGATACAGCGGGCACGTGACCGA aatacacccctaactacaatctacttagcatccttccatttctaccacagAGCAAATTGGCCAAGAGATGCTAGAAAACTTAAGCCATGATCGAGAGATGATACAGCGGGCACGGGACAGGgtgagcacgcatcatccaccttttcactttccttgcatgttcactagtaa Alignment from Exonerate_protein2genome AGCAAATCGGCCAAGAGATGTTGGAAAACCTGAGTCATGACAGAGAAAAGATACAGCGGGCACGTGACCGA aatacacccctaactacaatctacttagcatccttccatttctaccacagAGCAAATTGGCCAAGAGATGCTAGAAAACTTAAGCCATGATCGAGAGATGATACAGCGGGCACGGGACAGGgtgagcacgcatcatccaccttttcactttccttgcatgttcactagtaa Alignment from Exonerate_coding2genome AGCAAATCGGCCAAGAGATGTTGGAAAACCTGAGTCATGACAGAGAAAAGATACAGCGGGCACGTGACCGA aatacacccctaactacaatctacttagcatccttccatttctaccacagAGCAAATTGGCCAAGAGATGCTAGAAAACTTAAGCCATGATCGAGAGATGATACAGCGGGCACGGGACAGGgtgagcacgcatcatccaccttttcactttccttgcatgttcactagtaa Alignment from GeneWise AGCAAATCGGCCAAGAGATGTTGGAAAACCTGAGTCATGACAGAGAAAAGATACAGCGGGCACGTGACCGA aatacacccctaactacaatctacttagcatccttccatttctaccacagAGCAAATTGGCCAAGAGATGCTAGAAAACTTAAGCCATGATCGAGAGATGATACAGCGGGCACGGGACAGGgtgagcacgcatcatccaccttttcactttccttgcatgttcactagtaa #### Vti1a_ID11709_7 --> 0 - 2 Original Alignment CTCCGGGACGCAGATGCAAACCTGGGGAAGAGCTCTCGGATTCTGACGGGGATGCTGCGAag tgagtttatgagttcatgaaaatcagatattttattacaatgatctgcagCTCCATGATGCAGATGCAAACCTTGGAAAGAGCACCCGGATTCTTGCAGGGATGTTAAGGcggtaaaagatgcatgtccagcaatttgtgcacgctccatattcatagttac Alignment from CESAR CTCCGGGACGCAGATGCAAACCTGGGGAAGAGCTCTCGGATTCTGACGGGGATGCTGCGAag tgagtttatgagttcatgaaaatcagatattttattacaatgatctgcagCTCCATGATGCAGATGCAAACCTTGGAAAGAGCACCCGGATTCTTGCAGGGATGTTAAGGcggtaaaagatgcatgtccagcaatttgtgcacgctccatattcatagttac Alignment from Spaln_aa2Genome CTCCGGGACGCAGATGCAAACCTGGGGAAGAGCTCTCGGATTCTGACGGGGATGCTGCGAAG tgagtttatgagttcatgaaaatcagatattttattacaatgatctgcagCTCCATGATGCAGATGCAAACCTTGGAAAGAGCACCCGGATTCTTGCAGGGATGTTAAGGCGgtaaaagatgcatgtccagcaatttgtgcacgctccatattcatagttac Alignment from Spaln_nt2Genome CTCCGGGACGCAGATGCAAACCTGGGGAAGAGCTCTCGGATTCTGACGGGGATGCTGCGAAG tgagtttatgagttcatgaaaatcagatattttattacaatgatctgcagCTCCATGATGCAGATGCAAACCTTGGAAAGAGCACCCGGATTCTTGCAGGGATGTTAAGGCGgtaaaagatgcatgtccagcaatttgtgcacgctccatattcatagttac Alignment from Pairagon CTCCGGGACGCAGATGCAAACCTGGGGAAGAGCTCTCGGATTCTGACGGGGATG tgagtttatgagttcatgaaaatcagatattttattacaatgatctgcagCTCCATGATGCAGATGCAAACCTTGGAAAGAGCACCCGGATTCTTGCAGGGATGttaaggcggtaaaagatgcatgtccagcaatttgtgcacgctccatattcatagttac Alignment from Exonerate_protein2genome CTCCGGGACGCAGATGCAAACCTGGGGAAGAGCTCTCGGATTCTGACGGGGATGCTGCGAAG tgagtttatgagttcatgaaaatcagatattttattacaatgatctgcagCTCCATGATGCAGATGCAAACCTTGGAAAGAGCACCCGGATTCTTGCAGGGATGTTAAGGCGgtaaaagatgcatgtccagcaatttgtgcacgctccatattcatagttac Alignment from Exonerate_coding2genome CTCCGGGACGCAGATGCAAACCTGGGGAAGAGCTCTCGGATTCTGACGGGGATGCTGCGAAGA tgagtttatgagttcatgaaaatcagatattttattacaatgatctgcagCTCCATGATGCAGATGCAAACCTTGGAAAGAGCACCCGGATTCTTGCAGGGATGTTAAGGCGGtaaaagatgcatgtccagcaatttgtgcacgctccatattcatagttac Alignment from GeneWise CTCCGGGACGCAGATGCAAACCTGGGGAAGAGCTCTCGGATTCTGACGGGGATGCTGCGAAG tgagtttatgagttcatgaaaatcagatattttattacaatgatctgcagCTCCATGATGCAGATGCAAACCTTGGAAAGAGCACCCGGATTCTTGCAGGGATGTTAAGGCGgtaaaagatgcatgtccagcaatttgtgcacgctccatattcatagttac #### Vwa2_ID12228_2 --> 2 - 1 Original Alignment tgTCCCCGACCATCTCTCTTCAGGAAGTGCATGTGAACCGGGAGACCATGGGGAAGATCGCTGTGGCCAGCAAAt gccgttacagcccatgtccactctttaaccctccctcggctcgcccgcagtcACTCCTACCATTTCTCTACAGGAAGTGCATGTGAACCGAGAAACCATGGGCAGAATCTCTGTAGGCAGCAAGtgtaagatgatttctttaaatcatcctccatatctttgatatgaacaacag Alignment from CESAR tgTCCCCGACCATCTCTCTTCAGGAAGTGCATGTGAACCGGGAGACCATGGGGAAGATCGCTGTGGCCAGCAAAt gccgttacagcccatgtccactctttaaccctccctcggctcgcccgcagtcACTCCTACCATTTCTCTACAGGAAGTGCATGTGAACCGAGAAACCATGGGCAGAATCTCTGTAGGCAGCAAGtgtaagatgatttctttaaatcatcctccatatctttgatatgaacaacag Alignment from Spaln_aa2Genome TGTCCCCGACCATCTCTCTTCAGGAAGTGCATGTGAACCGGGAGACCATGGGGAAGATCGCTGTGGCCAGCAAAT gccgttacagcccatgtccactctttaaccctccctcggctcgcccgcagTCACTCCTACCATTTCTCTACAGGAAGTGCATGTGAACCGAGAAACCATGGGCAGAATCTCTGTAGGCAGCAAGTgtaagatgatttctttaaatcatcctccatatctttgatatgaacaacag Alignment from Spaln_nt2Genome TGTCCCCGACCATCTCTCTTCAGGAAGTGCATGTGAACCGGGAGACCATGGGGAAGATCGCTGTGGCCAGCAAAT gccgttacagcccatgtccactctttaaccctccctcggctcgcccgcagTCACTCCTACCATTTCTCTACAGGAAGTGCATGTGAACCGAGAAACCATGGGCAGAATCTCTGTAGGCAGCAAGTgtaagatgatttctttaaatcatcctccatatctttgatatgaacaacag Alignment from Pairagon TGTCCCCGACCATCTCTCTTCAGGAAGTGCATGTGAACCGGGAGACCATGGGGAAGATCGCTGTGGCCAGCAAAT gccgttacagcccatgtccactctttaaccctccctcggctcgcccgcagTCACTCCTACCATTTCTCTACAGGAAGTGCATGTGAACCGAGAAACCATGGGCAGAATCTCTGTAGGCAGCAAGTgtaagatgatttctttaaatcatcctccatatctttgatatgaacaacag Alignment from Exonerate_protein2genome TGTCCCCGACCATCTCTCTTCAGGAAGTGCATGTGAACCGGGAGACCATGGGGAAGATCGCTGTGGCCAGCAAAT gccgttacagcccatgtccactctttaaccctccctcggctcgcccgcagTCACTCCTACCATTTCTCTACAGGAAGTGCATGTGAACCGAGAAACCATGGGCAGAATCTCTGTAGGCAGCAAGTgtaagatgatttctttaaatcatcctccatatctttgatatgaacaacag Alignment from Exonerate_coding2genome TGTCCCCGACCATCTCTCTTCAGGAAGTGCATGTGAACCGGGAGACCATGGGGAAGATCGCTGTGGCCAGCAAAT gccgttacagcccatgtccactctttaaccctccctcggctcgcccgcagTCACTCCTACCATTTCTCTACAGGAAGTGCATGTGAACCGAGAAACCATGGGCAGAATCTCTGTAGGCAGCAAGTgtaagatgatttctttaaatcatcctccatatctttgatatgaacaacag Alignment from GeneWise TGTCCCCGACCATCTCTCTTCAGGAAGTGCATGTGAACCGGGAGACCATGGGGAAGATCGCTGTGGCCAGCAAAT gccgttacagcccatgtccactctttaaccctccctcggctcgcccgcagTCACTCCTACCATTTCTCTACAGGAAGTGCATGTGAACCGAGAAACCATGGGCAGAATCTCTGTAGGCAGCAAGTgtaagatgatttctttaaatcatcctccatatctttgatatgaacaacag #### Vwa2_ID12233_6 --> 1 - 1 Original Alignment gTGGGACGAGCTGCTCACGCTGGCCAGTGAGCCGAAGGACCGGCATGTGCTGTTGGCTGAGCAAGTGGAGGATGCCACCAATGGCCTCCTCAGCACCCTCAGCAGCTCCGCACTCTGCACCACTGCTGATCCAg acagtgagttgagctatcatccattttaactgtcccactctgcccttcaggTGGGCTGAGGTGCTCACTCTG---------GCCAAAGACCGGCATGTGTTATTGGCTGAGCAAGCAGAGGATGCTACAAATAGCCTCCTCAGCACTCTCAGCAGCTCGGCACTCTGTACCACAGCTGACCCTggtaaggtcacagggtggtggtaaactgctgagtgacccacagagaccaat Alignment from CESAR gTGGGACGAGCTGCTCACGCTGGCCAGTGAGCCGAAGGACCGGCATGTGCTGTTGGCTGAGCAAGTGGAGGATGCCACCAATGGCCTCCTCAGCACCCTCAGCAGCTCCGCACTCTGCACCACTGCTGATCCAg acagtgagttgagctatcatccattttaactgtcccactctgcccttcaggTGGGCTGAGGTGCTCACTCTGGCC---------AAAGACCGGCATGTGTTATTGGCTGAGCAAGCAGAGGATGCTACAAATAGCCTCCTCAGCACTCTCAGCAGCTCGGCACTCTGTACCACAGCTGACCCTggtaaggtcacagggtggtggtaaactgctgagtgacccacagagaccaat Alignment from Spaln_aa2Genome GTGGGACGAGCTGCTCACGCTGGCCAGTGAGCCGAAGGACCGGCATGTGCTGTTGGCTGAGCAAGTGGAGGATGCCACCAATGGCCTCCTCAGCACCCTCAGCAGCTCCGCACTCTGCACCACTGCTGATCCAG acagtgagttgagctatcatccattttaactgtcccactctgcccttcagGTGGGCTGAGGTGCTCACTCTGGCC---------AAAGACCGGCATGTGTTATTGGCTGAGCAAGCAGAGGATGCTACAAATAGCCTCCTCAGCACTCTCAGCAGCTCGGCACTCTGTACCACAGCTGACCCTGgtaaggtcacagggtggtggtaaactgctgagtgacccacagagaccaat Alignment from Spaln_nt2Genome GTGGGACGAGCTGCTCACGCTGGCCAGTGAGCCGAAGGACCGGCATGTGCTGTTGGCTGAGCAAGTGGAGGATGCCACCAATGGCCTCCTCAGCACCCTCAGCAGCTCCGCACTCTGCACCACTGCTGATCCAG acagtgagttgagctatcatccattttaactgtcccactctgcccttcagGTGGGCTGAGGTGCTCACTCTGGCC---------AAAGACCGGCATGTGTTATTGGCTGAGCAAGCAGAGGATGCTACAAATAGCCTCCTCAGCACTCTCAGCAGCTCGGCACTCTGTACCACAGCTGACCCTGgtaaggtcacagggtggtggtaaactgctgagtgacccacagagaccaat Alignment from Pairagon GTGGGACGAGCTGCTCACGCTGGCCAGTGAGCCGAAGGACCGGCATGTGCTGTTGGCTGAGCAAGTGGAGGATGCCACCAATGGCCTCCTCAGCACCCTCAGCAGCTCCGCACTCTGCACCACTGCTGATCCAG acagtgagttgagctatcatccattttaactgtcccactctgcccttcagGTGGGCTGAGGTGCTCACTCTGGCC---------AAAGACCGGCATGTGTTATTGGCTGAGCAAGCAGAGGATGCTACAAATAGCCTCCTCAGCACTCTCAGCAGCTCGGCACTCTGTACCACAGCTGACCCTGgtaaggtcacagggtggtggtaaactgctgagtgacccacagagaccaat Alignment from Exonerate_protein2genome GTGGGACGAGCTGCTCACGCTGGCCAGTGAGCCGAAGGACCGGCATGTGCTGTTGGCTGAGCAAGTGGAGGATGCCACCAATGGCCTCCTCAGCACCCTCAGCAGCTCCGCACTCTGCACCACTGCTGATCCAG acagtgagttgagctatcatccattttaactgtcccactctgcccttcagGTGGGCTGAGGTGCTCACTCTGGCC---------AAAGACCGGCATGTGTTATTGGCTGAGCAAGCAGAGGATGCTACAAATAGCCTCCTCAGCACTCTCAGCAGCTCGGCACTCTGTACCACAGCTGACCCTGgtaaggtcacagggtggtggtaaactgctgagtgacccacagagaccaat Alignment from Exonerate_coding2genome GTGGGACGAGCTGCTCACGCTGGCCAGTGAGCCGAAGGACCGGCATGTGCTGTTGGCTGAGCAAGTGGAGGATGCCACCAATGGCCTCCTCAGCACCCTCAGCAGCTCCGCACTCTGCACCACTGCTGATCCAG acagtgagttgagctatcatccattttaactgtcccactctgcccttcagGTGGGCTGAGGTGCTCACTCTGGCC---------AAAGACCGGCATGTGTTATTGGCTGAGCAAGCAGAGGATGCTACAAATAGCCTCCTCAGCACTCTCAGCAGCTCGGCACTCTGTACCACAGCTGACCCTGgtaaggtcacagggtggtggtaaactgctgagtgacccacagagaccaat Alignment from GeneWise GTGGGACGAGCTGCTCACGCTGGCCAGTGAGCCGAAGGACCGGCATGTGCTGTTGGCTGAGCAAGTGGAGGATGCCACCAATGGCCTCCTCAGCACCCTCAGCAGCTCCGCACTCTGCACCACTGCTGATCCAG acagtgagttgagctatcatccattttaactgtcccactctgcccttcagGTGGGCTGAGGTGCTCACTCTGGCC---------AAAGACCGGCATGTGTTATTGGCTGAGCAAGCAGAGGATGCTACAAATAGCCTCCTCAGCACTCTCAGCAGCTCGGCACTCTGTACCACAGCTGACCCTGgtaaggtcacagggtggtggtaaactgctgagtgacccacagagaccaat #### Vwa2_ID12235_8 --> 1 - 1 Original Alignment cTGGAAGAGAGTGTTCCAGACACACCCTGCCAACTGCTACAGAACCATCTGTCCAg cagcggcttggactcccaatggaattcctagtgtttggtatctgccgtagcTGGAAGAGAGTATTCCAGACACACCCTGCCAATTGCTATAGAACCATCTGTCCAagtgagtactgctgtccgtcagctagtgcaagagagggggtctgtccagga Alignment from CESAR cTGGAAGAGAGTGTTCCAGACACACCCTGCCAACTGCTACAGAACCATCTGTCCAg cagcggcttggactcccaatggaattcctagtgtttggtatctgccgtagcTGGAAGAGAGTATTCCAGACACACCCTGCCAATTGCTATAGAACCATCTGTCCAagtgagtactgctgtccgtcagctagtgcaagagagggggtctgtccagga Alignment from Spaln_aa2Genome CTGGAAGAGAGTGTTCCAGACACACCCTGCCAACTGCTACAGAACCATCTGTCCAG cagcggcttggactcccaatggaattcctagtgtttggtatctgccgtagCTGGAAGAGAGTATTCCAGACACACCCTGCCAATTGCTATAGAACCATCTGTCCAAgtgagtactgctgtccgtcagctagtgcaagagagggggtctgtccagga Alignment from Spaln_nt2Genome CTGGAAGAGAGTGTTCCAGACACACCCTGCCAACTGCTACAGAACCATCTGTCCAG cagcggcttggactcccaatggaattcctagtgtttggtatctgccgtagCTGGAAGAGAGTATTCCAGACACACCCTGCCAATTGCTATAGAACCATCTGTCCAAgtgagtactgctgtccgtcagctagtgcaagagagggggtctgtccagga Alignment from Pairagon CTGGAAGAGAGTGTTCCAGACACACCCTGCCAACTGCTACAGAACCATCTGTCCAG cagcggcttggactcccaatggaattcctagtgtttggtatctgccgtagCTGGAAGAGAGTATTCCAGACACACCCTGCCAATTGCTATAGAACCATCTGTCCAAgtgagtactgctgtccgtcagctagtgcaagagagggggtctgtccagga Alignment from Exonerate_protein2genome CTGGAAGAGAGTGTTCCAGACACACCCTGCCAACTGCTACAGAACCATCTGTCCAG cagcggcttggactcccaatggaattcctagtgtttggtatctgccgtagCTGGAAGAGAGTATTCCAGACACACCCTGCCAATTGCTATAGAACCATCTGTCCAAgtgagtactgctgtccgtcagctagtgcaagagagggggtctgtccagga Alignment from Exonerate_coding2genome CTGGAAGAGAGTGTTCCAGACACACCCTGCCAACTGCTACAGAACCATCTGTCCAG cagcggcttggactcccaatggaattcctagtgtttggtatctgccgtagCTGGAAGAGAGTATTCCAGACACACCCTGCCAATTGCTATAGAACCATCTGTCCAAgtgagtactgctgtccgtcagctagtgcaagagagggggtctgtccagga Alignment from GeneWise CTGGAAGAGAGTGTTCCAGACACACCCTGCCAACTGCTACAGAACCATCTGTCCAG cagcggcttggactcccaatggaattcctagtgtttggtatctgccgtagCTGGAAGAGAGTATTCCAGACACACCCTGCCAATTGCTATAGAACCATCTGTCCAAgtgagtactgctgtccgtcagctagtgcaagagagggggtctgtccagga #### Vwa2_ID12236_9 --> 2 - 1 Original Alignment gcCCCTGTGACTCCCAGCCCTGCCAAAATGGAGGCACGTGCATTCCAGAAGGTGTGGATAGGTACCACTGTCTCTGCCCACTGGCATTCGGAGGGGAAGTCAACTGTg caagagcttaatgagcttagttaccaagtgatcccctttctctgctttaggcCCCTGTGACACCCAGCCATGTCAAAATGGTGGCACATGCATACCAGAAGGGGTGGATCGATACCATTGTCTTTGCCCATTAGCCTTTGGAGGTGAAGTGAACTGCggtaggtacaaaggacaggcattgtattccacttgttacgccttgctactt Alignment from CESAR gcCCCTGTGACTCCCAGCCCTGCCAAAATGGAGGCACGTGCATTCCAGAAGGTGTGGATAGGTACCACTGTCTCTGCCCACTGGCATTCGGAGGGGAAGTCAACTGTg caagagcttaatgagcttagttaccaagtgatcccctttctctgctttaggcCCCTGTGACACCCAGCCATGTCAAAATGGTGGCACATGCATACCAGAAGGGGTGGATCGATACCATTGTCTTTGCCCATTAGCCTTTGGAGGTGAAGTGAACTGCggtaggtacaaaggacaggcattgtattccacttgttacgccttgctactt Alignment from Spaln_aa2Genome GCCCCTGTGACTCCCAGCCCTGCCAAAATGGAGGCACGTGCATTCCAGAAGGTGTGGATAGGTACCACTGTCTCTGCCCACTGGCATTCGGAGGGGAAGTCAACTGTG caagagcttaatgagcttagttaccaagtgatcccctttctctgctttagGCCCCTGTGACACCCAGCCATGTCAAAATGGTGGCACATGCATACCAGAAGGGGTGGATCGATACCATTGTCTTTGCCCATTAGCCTTTGGAGGTGAAGTGAACTGCGgtaggtacaaaggacaggcattgtattccacttgttacgccttgctactt Alignment from Spaln_nt2Genome GCCCCTGTGACTCCCAGCCCTGCCAAAATGGAGGCACGTGCATTCCAGAAGGTGTGGATAGGTACCACTGTCTCTGCCCACTGGCATTCGGAGGGGAAGTCAACTGTG caagagcttaatgagcttagttaccaagtgatcccctttctctgctttagGCCCCTGTGACACCCAGCCATGTCAAAATGGTGGCACATGCATACCAGAAGGGGTGGATCGATACCATTGTCTTTGCCCATTAGCCTTTGGAGGTGAAGTGAACTGCGgtaggtacaaaggacaggcattgtattccacttgttacgccttgctactt Alignment from Pairagon GCCCCTGTGACTCCCAGCCCTGCCAAAATGGAGGCACGTGCATTCCAGAAGGTGTGGATAGGTACCACTGTCTCTGCCCACTGGCATTCGGAGGGGAAGTCAACTGTG caagagcttaatgagcttagttaccaagtgatcccctttctctgctttagGCCCCTGTGACACCCAGCCATGTCAAAATGGTGGCACATGCATACCAGAAGGGGTGGATCGATACCATTGTCTTTGCCCATTAGCCTTTGGAGGTGAAGTGAACTGCGgtaggtacaaaggacaggcattgtattccacttgttacgccttgctactt Alignment from Exonerate_protein2genome GCCCCTGTGACTCCCAGCCCTGCCAAAATGGAGGCACGTGCATTCCAGAAGGTGTGGATAGGTACCACTGTCTCTGCCCACTGGCATTCGGAGGGGAAGTCAACTGTG caagagcttaatgagcttagttaccaagtgatcccctttctctgctttagGCCCCTGTGACACCCAGCCATGTCAAAATGGTGGCACATGCATACCAGAAGGGGTGGATCGATACCATTGTCTTTGCCCATTAGCCTTTGGAGGTGAAGTGAACTGCGgtaggtacaaaggacaggcattgtattccacttgttacgccttgctactt Alignment from Exonerate_coding2genome GCCCCTGTGACTCCCAGCCCTGCCAAAATGGAGGCACGTGCATTCCAGAAGGTGTGGATAGGTACCACTGTCTCTGCCCACTGGCATTCGGAGGGGAAGTCAACTGTG caagagcttaatgagcttagttaccaagtgatcccctttctctgctttagGCCCCTGTGACACCCAGCCATGTCAAAATGGTGGCACATGCATACCAGAAGGGGTGGATCGATACCATTGTCTTTGCCCATTAGCCTTTGGAGGTGAAGTGAACTGCGgtaggtacaaaggacaggcattgtattccacttgttacgccttgctactt Alignment from GeneWise GCCCCTGTGACTCCCAGCCCTGCCAAAATGGAGGCACGTGCATTCCAGAAGGTGTGGATAGGTACCACTGTCTCTGCCCACTGGCATTCGGAGGGGAAGTCAACTGTG caagagcttaatgagcttagttaccaagtgatcccctttctctgctttagGCCCCTGTGACACCCAGCCATGTCAAAATGGTGGCACATGCATACCAGAAGGGGTGGATCGATACCATTGTCTTTGCCCATTAGCCTTTGGAGGTGAAGTGAACTGCGgtaggtacaaaggacaggcattgtattccacttgttacgccttgctactt #### Vwa2_ID12237_10 --> 2 - 1 Original Alignment ccCCGAAGCTGAGCCTGGAATGCAGAATCGATGTCCTCTTCCTGCTGGACAGTTCTGCAGGCACCACATTGGGGGGCTTCCGGAGGGCCAAGGCCTTTGTCAAGCGCTTTGTGCAGGCCGTGCTGAGGGAGGACTCCCGAGCCCGCGTTGGGATAGCCAGTTATGGCAGGAATCTAATGGTGGCGGTGCCCGTCGGGGAGTACCAGCATGTGCCGGACCTGATCAGGAGCCTTGACAGCATTCCCTTCAGCGGTGGCCCGACCCTAACCGGGAGTGCCTTGCTCCAGGTGGCAGAGCACGGCTTTGGGAGTGCCAGCAGGACTGGTCAGGACAGGCCACGCAGAGTAGTAGTTCTGCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCACGCAAGGGCTCGGGAGCTACTCCTCCTGGGCGTGGGCAGTGAGATCCTGCAGGCGGAGCTGGTGAAGATCACCGGTAGCCCGAAGCATGTGATGGTCCACACAGACCCTCAGGACCTGTTCAGCCAAATCCCAGAGCTGCAGAGGAGGCTATGCAGCCAGCCACGGCCAg gtagaagatttcatatcaatgtcataaaagggcagtggatatactttcagctCCAAAA---AGCTTGGAATGCAGAATTGATGTACTTTTCCTGTTGGACAGTTCTGCAAGTACTACTCTGGGGGGATTTCGCAGAGTC---TCCTTTGTTAAATGCTTTATTCAGGCAGTGCTGAGGGAAGACTCCCAGGCCCACATTGGGATGGCAAGCTACGGAAGGAATCTGATGCTGTCAGTACCTGTTGGAGAATACCAACATGTGCCAGACTTGGTCAGGATTCTTGATAGTGTTCCATTTACTGGAGGCCCAACCCTAACTGGCAGTGCTTTGCTG---ATAGCAGAACATGGATTTGGGAGTGCAAGCAAGACTGGTCAGGACCGACCATGTCAAGTAATTGTCCTCCTGACTGCATCACGCTCACAGGATGAAGTGTCTGGTCCAGCAGCTCATTCAAGAGCTTGGGAGCTATTACTGTTGGGTGTGGGCAGTGAAATT---CAGGCAGAGCTAGTGAAGATCACTGGTAGTCCAAAGCATGTGATGGTTCACACAGAACCACAGGACCTGTCCAGCCAGATTCCAGAGCTCCAAAGGAGGCGTTGCAGCCAGCCACACCCAggtaggtctactgctgggccacttacaatcttattgagtaaaaggtctacc Alignment from CESAR ccCCGAAGCTGAGCCTGGAATGCAGAATCGATGTCCTCTTCCTGCTGGACAGTTCTGCAGGCACCACATTGGGGGGCTTCCGGAGGGCCAAGGCCTTTGTCAAGCGCTTTGTGCAGGCCGTGCTGAGGGAGGACTCCCGAGCCCGCGTTGGGATAGCCAGTTATGGCAGGAATCTAATGGTGGCGGTGCCCGTCGGGGAGTACCAGCATGTGCCGGACCTGATCAGGAGCCTTGACAGCATTCCCTTCAGCGGTGGCCCGACCCTAACCGGGAGTGCCTTGCTCCAGGTGGCAGAGCACGGCTTTGGGAGTGCCAGCAGGACTGGTCAGGACAGGCCACGCAGAGTAGTAGTTCTGCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCACGCAAGGGCTCGGGAGCTACTCCTCCTGGGCGTGGGCAGTGAGATCCTGCAGGCGGAGCTGGTGAAGATCACCGGTAGCCCGAAGCATGTGATGGTCCACACAGACCCTCAGGACCTGTTCAGCCAAATCCCAGAGCTGCAGAGGAGGCTATGCAGCCAGCCACGGCCAg gtagaagatttcatatcaatgtcataaaagggcagtggatatactttcagctCCAAAA---AGCTTGGAATGCAGAATTGATGTACTTTTCCTGTTGGACAGTTCTGCAAGTACTACTCTGGGGGGATTTCGCAGAGTC---TCCTTTGTTAAATGCTTTATTCAGGCAGTGCTGAGGGAAGACTCCCAGGCCCACATTGGGATGGCAAGCTACGGAAGGAATCTGATGCTGTCAGTACCTGTTGGAGAATACCAACATGTGCCAGACTTGGTCAGGATTCTTGATAGTGTTCCATTTACTGGAGGCCCAACCCTAACTGGCAGTGCTTTGCTG---ATAGCAGAACATGGATTTGGGAGTGCAAGCAAGACTGGTCAGGACCGACCATGTCAAGTAATTGTCCTCCTGACTGCATCACGCTCACAGGATGAAGTGTCTGGTCCAGCAGCTCATTCAAGAGCTTGGGAGCTATTACTGTTGGGTGTGGGCAGTGAAATT---CAGGCAGAGCTAGTGAAGATCACTGGTAGTCCAAAGCATGTGATGGTTCACACAGAACCACAGGACCTGTCCAGCCAGATTCCAGAGCTCCAAAGGAGGCGTTGCAGCCAGCCACACCCAggtaggtctactgctgggccacttacaatcttattgagtaaaaggtctacc Alignment from Spaln_aa2Genome CCCCGAAGCTGAGCCTGGAATGCAGAATCGATGTCCTCTTCCTGCTGGACAGTTCTGCAGGCACCACATTGGGGGGCTTCCGGAGGGCCAAGGCCTTTGTCAAGCGCTTTGTGCAGGCCGTGCTGAGGGAGGACTCCCGAGCCCGCGTTGGGATAGCCAGTTATGGCAGGAATCTAATGGTGGCGGTGCCCGTCGGGGAGTACCAGCATGTGCCGGACCTGATCAGGAGCCTTGACAGCATTCCCTTCAGCGGTGGCCCGACCCTAACCGGGAGTGCCTTGCTCCAGGTGGCAGAGCACGGCTTTGGGAGTGCCAGCAGGACTGGTCAGGACAGGCCACGCAGAGTAGTAGTTCTGCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCACGCAAGGGCTCGGGAGCTACTCCTCCTGGGCGTGGGCAGTGAGATCCTGCAGGCGGAGCTGGTGAAGATCACCGGTAGCCCGAAGCATGTGATGGTCCACACAGACCCTCAGGACCTGTTCAGCCAAATCCCAGAGCTGCAGAGGAGGCTATGCAGCCAGCCACGGCCAG gtagaagatttcatatcaatgtcataaaagggcagtggatatactttcagCTCCAAAA---AGCTTGGAATGCAGAATTGATGTACTTTTCCTGTTGGACAGTTCTGCAAGTACTACTCTGGGGGGATTTCGCAGAGTC---TCCTTTGTTAAATGCTTTATTCAGGCAGTGCTGAGGGAAGACTCCCAGGCCCACATTGGGATGGCAAGCTACGGAAGGAATCTGATGCTGTCAGTACCTGTTGGAGAATACCAACATGTGCCAGACTTGGTCAGGATTCTTGATAGTGTTCCATTTACTGGAGGCCCAACCCTAACTGGCAGTGCTTTGCTG---ATAGCAGAACATGGATTTGGGAGTGCAAGCAAGACTGGTCAGGACCGACCATGTCAAGTAATTGTCCTCCTGACTGCATCACGCTCACAGGATGAAGTGTCTGGTCCAGCAGCTCATTCAAGAGCTTGGGAGCTATTACTGTTGGGTGTGGGCAGTGAAATT---CAGGCAGAGCTAGTGAAGATCACTGGTAGTCCAAAGCATGTGATGGTTCACACAGAACCACAGGACCTGTCCAGCCAGATTCCAGAGCTCCAAAGGAGGCGTTGCAGCCAGCCACACCCAGgtaggtctactgctgggccacttacaatcttattgagtaaaaggtctacc Alignment from Spaln_nt2Genome CCCCGAAGCTGAGCCTGGAATGCAGAATCGATGTCCTCTTCCTGCTGGACAGTTCTGCAGGCACCACATTGGGGGGCTTCCGGAGGGCCAAGGCCTTTGTCAAGCGCTTTGTGCAGGCCGTGCTGAGGGAGGACTCCCGAGCCCGCGTTGGGATAGCCAGTTATGGCAGGAATCTAATGGTGGCGGTGCCCGTCGGGGAGTACCAGCATGTGCCGGACCTGATCAGGAGCCTTGACAGCATTCCCTTCAGCGGTGGCCCGACCCTAACCGGGAGTGCCTTGCTCCAGGTGGCAGAGCACGGCTTTGGGAGTGCCAGCAGGACTGGTCAGGACAGGCCACGCAGAGTAGTAGTTCTGCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCACGCAAGGGCTCGGGAGCTACTCCTCCTGGGCGTGGGCAGTGAGATCCTGCAGGCGGAGCTGGTGAAGATCACCGGTAGCCCGAAGCATGTGATGGTCCACACAGACCCTCAGGACCTGTTCAGCCAAATCCCAGAGCTGCAGAGGAGGCTATGCAGCCAGCCACGGCCAG gtagaagatttcatatcaatgtcataaaagggcagtggatatactttcagCTCCAAA---AAGCTTGGAATGCAGAATTGATGTACTTTTCCTGTTGGACAGTTCTGCAAGTACTACTCTGGGGGGATTTCGCAGAGTC---TCCTTTGTTAAATGCTTTATTCAGGCAGTGCTGAGGGAAGACTCCCAGGCCCACATTGGGATGGCAAGCTACGGAAGGAATCTGATGCTGTCAGTACCTGTTGGAGAATACCAACATGTGCCAGACTTGGTCAGGATTCTTGATAGTGTTCCATTTACTGGAGGCCCAACCCTAACTGGCAGTGCTTTGCT---GATAGCAGAACATGGATTTGGGAGTGCAAGCAAGACTGGTCAGGACCGACCATGTCAAGTAATTGTCCTCCTGACTGCATCACGCTCACAGGATGAAGTGTCTGGTCCAGCAGCTCATTCAAGAGCTTGGGAGCTATTACTGTTGGGTGTGGGCAGTGAAA---TTCAGGCAGAGCTAGTGAAGATCACTGGTAGTCCAAAGCATGTGATGGTTCACACAGAACCACAGGACCTGTCCAGCCAGATTCCAGAGCTCCAAAGGAGGCGTTGCAGCCAGCCACACCCAGgtaggtctactgctgggccacttacaatcttattgagtaaaaggtctacc Alignment from Pairagon CCCCGAAGCTGAGCCTGGAATGCAGAATCGATGTCCTCTTCCTGCTGGACAGTTCTGCAGGCACCACATTGGGGGGCTTCCGGAGGGCCAAGGCCTTTGTCAAGCGCTTTGTGCAGGCCGTGCTGAGGGAGGACTCCCGAGCCCGCGTTGGGATAGCCAGTTATGGCAGGAATCTAATGGTGGCGGTGCCCGTCGGGGAGTACCAGCATGTGCCGGACCTGATCAGGAGCCTTGACAGCATTCCCTTCAGCGGTGGCCCGACCCTAACCGGGAGTGCCTTGCTCCAGGTGGCAGAGCACGGCTTTGGGAGTGCCAGCAGGACTGGTCAGGACAGGCCACGCAGAGTAGTAGTTCTGCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCACGCAAGGGCTCGGGAGCTACTCCTCCTGGGCGTGGGCAGTGAGATCCTGCAGGCGGAGCTGGTGAAGATCACCGGTAGCCCGAAGCATGTGATGGTCCACACAGACCCTCAGGACCTGTTCAGCCAAATCCCAGAGCTGCAGAGGAGGCTATGCAGCCAGCCACGGCCAG gtagaagatttcatatcaatgtcataaaagggcagtggatatactttcagCTCCAAA---AAGCTTGGAATGCAGAATTGATGTACTTTTCCTGTTGGACAGTTCTGCAAGTACTACTCTGGGGGGATTTCGCAGAGTC---TCCTTTGTTAAATGCTTTATTCAGGCAGTGCTGAGGGAAGACTCCCAGGCCCACATTGGGATGGCAAGCTACGGAAGGAATCTGATGCTGTCAGTACCTGTTGGAGAATACCAACATGTGCCAGACTTGGTCAGGATTCTTGATAGTGTTCCATTTACTGGAGGCCCAACCCTAACTGGCAGTGCTTTGCT---GATAGCAGAACATGGATTTGGGAGTGCAAGCAAGACTGGTCAGGACCGACCATGTCAAGTAATTGTCCTCCTGACTGCATCACGCTCACAGGATGAAGTGTCTGGTCCAGCAGCTCATTCAAGAGCTTGGGAGCTATTACTGTTGGGTGTGGGCAGTGAAATT---CAGGCAGAGCTAGTGAAGATCACTGGTAGTCCAAAGCATGTGATGGTTCACACAGAACCACAGGACCTGTCCAGCCAGATTCCAGAGCTCCAAAGGAGGCGTTGCAGCCAGCCACACCCAGgtaggtctactgctgggccacttacaatcttattgagtaaaaggtctacc Alignment from Exonerate_protein2genome CCCCGAAGCTGAGCCTGGAATGCAGAATCGATGTCCTCTTCCTGCTGGACAGTTCTGCAGGCACCACATTGGGGGGCTTCCGGAGGGCCAAGGCCTTTGTCAAGCGCTTTGTGCAGGCCGTGCTGAGGGAGGACTCCCGAGCCCGCGTTGGGATAGCCAGTTATGGCAGGAATCTAATGGTGGCGGTGCCCGTCGGGGAGTACCAGCATGTGCCGGACCTGATCAGGAGCCTTGACAGCATTCCCTTCAGCGGTGGCCCGACCCTAACCGGGAGTGCCTTGCTCCAGGTGGCAGAGCACGGCTTTGGGAGTGCCAGCAGGACTGGTCAGGACAGGCCACGCAGAGTAGTAGTTCTGCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCACGCAAGGGCTCGGGAGCTACTCCTCCTGGGCGTGGGCAGTGAGATCCTGCAGGCGGAGCTGGTGAAGATCACCGGTAGCCCGAAGCATGTGATGGTCCACACAGACCCTCAGGACCTGTTCAGCCAAATCCCAGAGCTGCAGAGGAGGCTATGCAGCCAGCCACGGCCAG gtagaagatttcatatcaatgtcataaaagggcagtggatatactttcagCTCCAAAA---AGCTTGGAATGCAGAATTGATGTACTTTTCCTGTTGGACAGTTCTGCAAGTACTACTCTGGGGGGATTTCGCAGAGTC---TCCTTTGTTAAATGCTTTATTCAGGCAGTGCTGAGGGAAGACTCCCAGGCCCACATTGGGATGGCAAGCTACGGAAGGAATCTGATGCTGTCAGTACCTGTTGGAGAATACCAACATGTGCCAGACTTGGTCAGGATTCTTGATAGTGTTCCATTTACTGGAGGCCCAACCCTAACTGGCAGTGCTTTGCTG---ATAGCAGAACATGGATTTGGGAGTGCAAGCAAGACTGGTCAGGACCGACCATGTCAAGTAATTGTCCTCCTGACTGCATCACGCTCACAGGATGAAGTGTCTGGTCCAGCAGCTCATTCAAGAGCTTGGGAGCTATTACTGTTGGGTGTGGGCAGTGAAATT---CAGGCAGAGCTAGTGAAGATCACTGGTAGTCCAAAGCATGTGATGGTTCACACAGAACCACAGGACCTGTCCAGCCAGATTCCAGAGCTCCAAAGGAGGCGTTGCAGCCAGCCACACCCAGgtaggtctactgctgggccacttacaatcttattgagtaaaaggtctacc Alignment from Exonerate_coding2genome CCCCGAAGCTGAGCCTGGAATGCAGAATCGATGTCCTCTTCCTGCTGGACAGTTCTGCAGGCACCACATTGGGGGGCTTCCGGAGGGCCAAGGCCTTTGTCAAGCGCTTTGTGCAGGCCGTGCTGAGGGAGGACTCCCGAGCCCGCGTTGGGATAGCCAGTTATGGCAGGAATCTAATGGTGGCGGTGCCCGTCGGGGAGTACCAGCATGTGCCGGACCTGATCAGGAGCCTTGACAGCATTCCCTTCAGCGGTGGCCCGACCCTAACCGGGAGTGCCTTGCTCCAGGTGGCAGAGCACGGCTTTGGGAGTGCCAGCAGGACTGGTCAGGACAGGCCACGCAGAGTAGTAGTTCTGCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCACGCAAGGGCTCGGGAGCTACTCCTCCTGGGCGTGGGCAGTGAGATCCTGCAGGCGGAGCTGGTGAAGATCACCGGTAGCCCGAAGCATGTGATGGTCCACACAGACCCTCAGGACCTGTTCAGCCAAATCCCAGAGCTGCAGAGGAGGCTATGCAGCCAGCCACGGCCAG gtagaagatttcatatcaatgtcataaaagggcagtggatatactttcagCTCCAAAA---AGCTTGGAATGCAGAATTGATGTACTTTTCCTGTTGGACAGTTCTGCAAGTACTACTCTGGGGGGATTTCGCAGAGTC---TCCTTTGTTAAATGCTTTATTCAGGCAGTGCTGAGGGAAGACTCCCAGGCCCACATTGGGATGGCAAGCTACGGAAGGAATCTGATGCTGTCAGTACCTGTTGGAGAATACCAACATGTGCCAGACTTGGTCAGGATTCTTGATAGTGTTCCATTTACTGGAGGCCCAACCCTAACTGGCAGTGCTTTGCTG---ATAGCAGAACATGGATTTGGGAGTGCAAGCAAGACTGGTCAGGACCGACCATGTCAAGTAATTGTCCTCCTGACTGCATCACGCTCACAGGATGAAGTGTCTGGTCCAGCAGCTCATTCAAGAGCTTGGGAGCTATTACTGTTGGGTGTGGGCAGTGAAATT---CAGGCAGAGCTAGTGAAGATCACTGGTAGTCCAAAGCATGTGATGGTTCACACAGAACCACAGGACCTGTCCAGCCAGATTCCAGAGCTCCAAAGGAGGCGTTGCAGCCAGCCACACCCAGgtaggtctactgctgggccacttacaatcttattgagtaaaaggtctacc Alignment from GeneWise CCCCGAAGCTGAGCCTGGAATGCAGAATCGATGTCCTCTTCCTGCTGGACAGTTCTGCAGGCACCACATTGGGGGGCTTCCGGAGGGCCAAGGCCTTTGTCAAGCGCTTTGTGCAGGCCGTGCTGAGGGAGGACTCCCGAGCCCGCGTTGGGATAGCCAGTTATGGCAGGAATCTAATGGTGGCGGTGCCCGTCGGGGAGTACCAGCATGTGCCGGACCTGATCAGGAGCCTTGACAGCATTCCCTTCAGCGGTGGCCCGACCCTAACCGGGAGTGCCTTGCTCCAGGTGGCAGAGCACGGCTTTGGGAGTGCCAGCAGGACTGGTCAGGACAGGCCACGCAGAGTAGTAGTTCTGCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCACGCAAGGGCTCGGGAGCTACTCCTCCTGGGCGTGGGCAGTGAGATCCTGCAGGCGGAGCTGGTGAAGATCACCGGTAGCCCGAAGCATGTGATGGTCCACACAGACCCTCAGGACCTGTTCAGCCAAATCCCAGAGCTGCAGAGGAGGCTATGCAGCCAGCCACGGCCAG gtagaagatttcatatcaatgtcataaaagggcagtggatatactttcagCTCCAAAA---AGCTTGGAATGCAGAATTGATGTACTTTTCCTGTTGGACAGTTCTGCAAGTACTACTCTGGGGGGATTTCGCAGAGTC---TCCTTTGTTAAATGCTTTATTCAGGCAGTGCTGAGGGAAGACTCCCAGGCCCACATTGGGATGGCAAGCTACGGAAGGAATCTGATGCTGTCAGTACCTGTTGGAGAATACCAACATGTGCCAGACTTGGTCAGGATTCTTGATAGTGTTCCATTTACTGGAGGCCCAACCCTAACTGGCAGTGCTTTGCTG---ATAGCAGAACATGGATTTGGGAGTGCAAGCAAGACTGGTCAGGACCGACCATGTCAAGTAATTGTCCTCCTGACTGCATCACGCTCACAGGATGAAGTGTCTGGTCCAGCAGCTCATTCAAGAGCTTGGGAGCTATTACTGTTGGGTGTGGGCAGTGAAATT---CAGGCAGAGCTAGTGAAGATCACTGGTAGTCCAAAGCATGTGATGGTTCACACAGAACCACAGGACCTGTCCAGCCAGATTCCAGAGCTCCAAAGGAGGCGTTGCAGCCAGCCACACCCAGgtaggtctactgctgggccacttacaatcttattgagtaaaaggtctacc #### Vwa2_ID12238_11 --> 2 - 1 Original Alignment gcTGCCAGGCACAGTCACTGGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCTGTGGGACGTGAGAACTTTGCCCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGGTTTGATGTGAATCCTGATGTGACACAGGTTGGCCTGGTGGTATATGGCAGCCGGGTGCAGACTGCCTTCGGGCTAGACACCCATCCCACCCGGGCTGCCGTGTTGCGGGCCATG------AGCCAGGCTCCCTACCTAGGGGGTGTGGGTTCTGCTGGTACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTCCAGAGGGGTGCCCGCCCCGGTGTCCCCAAGGCCGTGGTGATGCTCACAGGCGGGAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGGCAATGGCATCTCAGTCTTGGTTATGAGC------GTGGGAGCCGTCCTCAGGGAGGCAGTACGGAGGCTTGCCGGTCCACGCGACTCCCTGATCCATGTGGCAGCTTACACAGACCTTCCGTACCATCAGGACATGCTCATC---GAGTGGCTATGTAGAg ctttgattaatgagaatgatgtaggtaggattgctcctctcatctggcaggcTGTCAGGCACAATCATTGGAACTTCTATTCCTACTGGATGCCTCAGCTTCAGTGGGGCATGAGAACTTTGCTCACATGCAGAGCTCCATCAGAACATGCACTCTTCGGTTTGATGTAAATCCTGGTGTAACTCATGTT------GTGGTATATGGTCGC---------CCAGCATTTGGGCAAGACATGCATCCTACACGGGCTGCTGTAGTCAGAACCATGAGCCAGAGCCAAGCTCCCTATCTGGGTAGTGGTGGTTCCACTGATGCTGCCCTGCTATATATTGAAGACACAGTGATGATGGATCAGAGGGGCACCCACTCAGGTGTGCCCAATGCTGTGGTAATGGTCACAAGCGGTAGTGGGGCAGAGGATGCAGCAATACCTGCACAGAAATTACGAGGAAATGGCATTTCAGTTCTGGTTAGGAGTGAGCGCATAGGAGCTGTCCTTAAGGAAGCAGTACCAAGGCTTGTCTGTCCCTGTGATTCTTTGATT---GTCGCCGGCTACATAGACCTACCTTACTACCGTGACATGCTCACTGTGGAATGGCTGTGTCGAggtaagttagcacagatcatattggcaatgcatttccctgggttaactggg Alignment from CESAR gcTGCCAGGCACAGTCACTGGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCTGTGGGACGTGAGAACTTTGCCCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGGTTTGATGTGAATCCTGATGTGACACAGGTTGGCCTGGTGGTATATGGCAGCCGGGTGCAGACTGCCTTCGGGCTAGACACCCATCCCACCCGGGCTGCCGTGTTGCGGGCCATGAGCCAG------GCTCCCTACCTAGGGGGTGTGGGTTCTGCTGGTACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTCCAGAGGGGTGCCCGCCCCGGTGTCCCCAAGGCCGTGGTGATGCTCACAGGCGGGAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGGCAATGGCATCTCAGTCTTGGTTATGAGC------GTGGGAGCCGTCCTCAGGGAGGCAGTACGGAGGCTTGCCGGTCCACGCGACTCCCTGATCCATGTGGCAGCTTACACAGACCTTCCGTACCATCAGGACATGCTC---ATCGAGTGGCTATGTAGAg ctttgattaatgagaatgatgtaggtaggattgctcctctcatctggcaggcTGTCAGGCACAATCATTGGAACTTCTATTCCTACTGGATGCCTCAGCTTCAGTGGGGCATGAGAACTTTGCTCACATGCAGAGCTCCATCAGAACATGCACTCTTCGGTTTGATGTAAATCCTGGTGTAACTCATGTT------GTGGTATATGGT---------CGCCCAGCATTTGGGCAAGACATGCATCCTACACGGGCTGCTGTAGTCAGAACCATGAGCCAGAGCCAAGCTCCCTATCTGGGTAGTGGTGGTTCCACTGATGCTGCCCTGCTATATATTGAAGACACAGTGATGATGGATCAGAGGGGCACCCACTCAGGTGTGCCCAATGCTGTGGTAATGGTCACAAGCGGTAGTGGGGCAGAGGATGCAGCAATACCTGCACAGAAATTACGAGGAAATGGCATTTCAGTTCTGGTTAGGAGTGAGCGCATAGGAGCTGTCCTTAAGGAAGCAGTACCAAGGCTTGTCTGTCCCTGTGATTCTTTGATT---GTCGCCGGCTACATAGACCTACCTTACTACCGTGACATGCTCACTGTGGAATGGCTGTGTCGAggtaagttagcacagatcatattggcaatgcatttccctgggttaactggg Alignment from Spaln_aa2Genome GCTGCCAGGCACAGTCACTGGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCTGTGGGACGTGAGAACTTTGCCCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGGTTTGATGTGAATCCTGATGTGACACAGGTTGGCCTGGTGGTATATGGCAGCCGGGTGCAGACTGCCTTCGGGCTAGACACCCATCCCACCCGGGCTGCCGTGTTGCGGGCCATG------AGCCAGGCTCCCTACCTAGGGGGTGTGGGTTCTGCTGGTACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTCCAGAGGGGTGCCCGCCCCGGTGTCCCCAAGGCCGTGGTGATGCTCACAGGCGGGAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGGCAATGGCATCTCAGTCTTGGTTATGAGC------GTGGGAGCCGTCCTCAGGGAGGCAGTACGGAGGCTTGCCGGTCCACGCGACTCCCTGATCCATGTGGCAGCTTACACAGACCTTCCGTACCATCAGGACATGCTC---ATCGAGTGGCTATGTAGAG ctttgattaatgagaatgatgtaggtaggattgctcctctcatctggcagGCTGTCAGGCACAATCATTGGAACTTCTATTCCTACTGGATGCCTCAGCTTCAGTGGGGCATGAGAACTTTGCTCACATGCAGAGCTCCATCAGAACATGCACTCTTCGGTTTGATGTAAATCCTGGTGTAACTCATGTT------GTGGTATATGGT---------CGCCCAGCATTTGGGCAAGACATGCATCCTACACGGGCTGCTGTAGTCAGAACCATGAGCCAGAGCCAAGCTCCCTATCTGGGTAGTGGTGGTTCCACTGATGCTGCCCTGCTATATATTGAAGACACAGTGATGATGGATCAGAGGGGCACCCACTCAGGTGTGCCCAATGCTGTGGTAATGGTCACAAGCGGTAGTGGGGCAGAGGATGCAGCAATACCTGCACAGAAATTACGAGGAAATGGCATTTCAGTTCTGGTTAGGAGTGAGCGCATAGGAGCTGTCCTTAAGGAAGCAGTACCAAGGCTTGTCTGTCCCTGTGATTCTTTGATT---GTCGCCGGCTACATAGACCTACCTTACTACCGTGACATGCTCACTGTGGAATGGCTGTGTCGAGgtaagttagcacagatcatattggcaatgcatttccctgggttaactggg Alignment from Spaln_nt2Genome GCTGCCAGGCACAGTCACTGGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCTGTGGGACGTGAGAACTTTGCCCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGGTTTGATGTGAATCCTGATGTGACACAGGTTGGCCTGGTGGTATATGGCAGCCGGGTGCAGACTGCCTTCGGGCTAGACACCCATCCCACCCGGGCTGCCGTGTTGCGGGCCATGAGCCAG------GCTCCCTACCTAGGGGGTGTGGGTTCTGCTGGTACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTCCAGAGGGGTGCCCGCCCCGGTGTCCCCAAGGCCGTGGTGATGCTCACAGGCGGGAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGGCAATGGCATCTCAGTCTTGGTTA----TGAGCG--TGGGAGCCGTCCTCAGGGAGGCAGTACGGAGGCTTGCCGGTCCACGCGACTCCCTGATCCATGTGGCAGCTTACACAGACCTTCCGTACCATCAGGACATGCTCA---TCGAGTGGCTATGTAGAG ctttgattaatgagaatgatgtaggtaggattgctcctctcatctggcagGCTGTCAGGCACAATCATTGGAACTTCTATTCCTACTGGATGCCTCAGCTTCAGTGGGGCATGAGAACTTTGCTCACATGCAGAGCTCCATCAGAACATGCACTCTTCGGTTTGATGTAAATCCTGGTGTAACTCATGTT------GTGGTATATGGTCGCC---------CAGCATTTGGGCAAGACATGCATCCTACACGGGCTGCTGTAGTCAGAACCATGAGCCAGAGCCAAGCTCCCTATCTGGGTAGTGGTGGTTCCACTGATGCTGCCCTGCTATATATTGAAGACACAGTGATGATGGATCAGAGGGGCACCCACTCAGGTGTGCCCAATGCTGTGGTAATGGTCACAAGCGGTAGTGGGGCAGAGGATGCAGCAATACCTGCACAGAAATTACGAGGAAATGGCATTTCAGTTCTGGTTAGGAGTGAGCGCATAGGAGCTGTCCTTAAGGAAGCAGTACCAAGGCTTGTCTGTCCCTGTGATTCTTTGAT---TGTCGCCGGCTACATAGACCTACCTTACTACCGTGACATGCTCACTGTGGAATGGCTGTGTCGAGgtaagttagcacagatcatattggcaatgcatttccctgggttaactggg Alignment from Pairagon GCTGCCAGGCACAGTCACTGGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCTGTGGGACGTGAGAACTTTGCCCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGGTTTGATGTGAATCCTGATGTGACACAGGTTGGCCTGGTGGTATATGGCAGCCGGGTGCAGACTGCCTTCGGGCTAGACACCCATCCCACCCGGGCTGCCGTGTTGCGGGCCATGAGCCAG------GCTCCCTACCTAGGGGGTGTGGGTTCTGCTGGTACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTCCAGAGGGGTGCCCGCCCCGGTGTCCCCAAGGCCGTGGTGATGCTCACAGGCGGGAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGGCAATGGCATCTCAGTCTTGGTTATGAGCG------TGGGAGCCGTCCTCAGGGAGGCAGTACGGAGGCTTGCCGGTCCACGCGACTCCCTGATCCATGTGGCAGCTTACACAGACCTTCCGTACCATCAGGACATGCTCA---TCGAGTGGCTATGTAGAG ctttgattaatgagaatgatgtaggtaggattgctcctctcatctggcagGCTGTCAGGCACAATCATTGGAACTTCTATTCCTACTGGATGCCTCAGCTTCAGTGGGGCATGAGAACTTTGCTCACATGCAGAGCTCCATCAGAACATGCACTCTTCGGTTTGATGTAAATCCTGGTGTAACTCATGTT------GTGGTATATGGTCGCC---------CAGCATTTGGGCAAGACATGCATCCTACACGGGCTGCTGTAGTCAGAACCATGAGCCAGAGCCAAGCTCCCTATCTGGGTAGTGGTGGTTCCACTGATGCTGCCCTGCTATATATTGAAGACACAGTGATGATGGATCAGAGGGGCACCCACTCAGGTGTGCCCAATGCTGTGGTAATGGTCACAAGCGGTAGTGGGGCAGAGGATGCAGCAATACCTGCACAGAAATTACGAGGAAATGGCATTTCAGTTCTGGTTAGGAGTGAGCGCATAGGAGCTGTCCTTAAGGAAGCAGTACCAAGGCTTGTCTGTCCCTGTGATTCTTTGAT---TGTCGCCGGCTACATAGACCTACCTTACTACCGTGACATGCTCACTGTGGAATGGCTGTGTCGAGgtaagttagcacagatcatattggcaatgcatttccctgggttaactggg Alignment from Exonerate_protein2genome GCTGCCAGGCACAGTCACTGGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCTGTGGGACGTGAGAACTTTGCCCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGGTTTGATGTGAATCCTGATGTGACACAGGTTGGCCTGGTGGTATATGGCAGCCGGGTGCAGACTGCCTTCGGGCTAGACACCCATCCCACCCGGGCTGCCGTGTTGCGGGCCATG------AGCCAGGCTCCCTACCTAGGGGGTGTGGGTTCTGCTGGTACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTCCAGAGGGGTGCCCGCCCCGGTGTCCCCAAGGCCGTGGTGATGCTCACAGGCGGGAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGGCAATGGCATCTCAGTCTTGGTTATGAGC------GTGGGAGCCGTCCTCAGGGAGGCAGTACGGAGGCTTGCCGGTCCACGCGACTCCCTGATCCATGTGGCAGCTTACACAGACCTTCCGTACCATCAGGACATGCTC---ATCGAGTGGCTATGTAGAG ctttgattaatgagaatgatgtaggtaggattgctcctctcatctggcagGCTGTCAGGCACAATCATTGGAACTTCTATTCCTACTGGATGCCTCAGCTTCAGTGGGGCATGAGAACTTTGCTCACATGCAGAGCTCCATCAGAACATGCACTCTTCGGTTTGATGTAAATCCTGGTGTAACTCATGTT------GTGGTATATGGT---------CGCCCAGCATTTGGGCAAGACATGCATCCTACACGGGCTGCTGTAGTCAGAACCATGAGCCAGAGCCAAGCTCCCTATCTGGGTAGTGGTGGTTCCACTGATGCTGCCCTGCTATATATTGAAGACACAGTGATGATGGATCAGAGGGGCACCCACTCAGGTGTGCCCAATGCTGTGGTAATGGTCACAAGCGGTAGTGGGGCAGAGGATGCAGCAATACCTGCACAGAAATTACGAGGAAATGGCATTTCAGTTCTGGTTAGGAGTGAGCGCATAGGAGCTGTCCTTAAGGAAGCAGTACCAAGGCTTGTCTGTCCCTGTGATTCTTTGATT---GTCGCCGGCTACATAGACCTACCTTACTACCGTGACATGCTCACTGTGGAATGGCTGTGTCGAGgtaagttagcacagatcatattggcaatgcatttccctgggttaactggg Alignment from Exonerate_coding2genome GCTGCCAGGCACAGTCACTGGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCTGTGGGACGTGAGAACTTTGCCCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGGTTTGATGTGAATCCTGATGTGACACAGGTTGGCCTGGTGGTATATGGCAGCCGGGTGCAGACTGCCTTCGGGCTAGACACCCATCCCACCCGGGCTGCCGTGTTGCGGGCCATG------AGCCAGGCTCCCTACCTAGGGGGTGTGGGTTCTGCTGGTACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTCCAGAGGGGTGCCCGCCCCGGTGTCCCCAAGGCCGTGGTGATGCTCACAGGCGGGAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGGCAATGGCATCTCAGTCTTGGTTATGAGC------GTGGGAGCCGTCCTCAGGGAGGCAGTACGGAGGCTTGCCGGTCCACGCGACTCCCTGATCCATGTGGCAGCTTACACAGACCTTCCGTACCATCAGGACATGCTC---ATCGAGTGGCTATGTAGAG ctttgattaatgagaatgatgtaggtaggattgctcctctcatctggcagGCTGTCAGGCACAATCATTGGAACTTCTATTCCTACTGGATGCCTCAGCTTCAGTGGGGCATGAGAACTTTGCTCACATGCAGAGCTCCATCAGAACATGCACTCTTCGGTTTGATGTAAATCCTGGTGTAACTCATGTT------GTGGTATATGGT---------CGCCCAGCATTTGGGCAAGACATGCATCCTACACGGGCTGCTGTAGTCAGAACCATGAGCCAGAGCCAAGCTCCCTATCTGGGTAGTGGTGGTTCCACTGATGCTGCCCTGCTATATATTGAAGACACAGTGATGATGGATCAGAGGGGCACCCACTCAGGTGTGCCCAATGCTGTGGTAATGGTCACAAGCGGTAGTGGGGCAGAGGATGCAGCAATACCTGCACAGAAATTACGAGGAAATGGCATTTCAGTTCTGGTTAGGAGTGAGCGCATAGGAGCTGTCCTTAAGGAAGCAGTACCAAGGCTTGTCTGTCCCTGTGATTCTTTGATT---GTCGCCGGCTACATAGACCTACCTTACTACCGTGACATGCTCACTGTGGAATGGCTGTGTCGAGgtaagttagcacagatcatattggcaatgcatttccctgggttaactggg Alignment from GeneWise GCTGCCAGGCACAGTCACTGGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCTGTGGGACGTGAGAACTTTGCCCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGGTTTGATGTGAATCCTGATGTGACACAGGTTGGCCTGGTGGTATATGGCAGCCGGGTGCAGACTGCCTTCGGGCTAGACACCCATCCCACCCGGGCTGCCGTGTTGCGGGCCATG------AGCCAGGCTCCCTACCTAGGGGGTGTGGGTTCTGCTGGTACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTCCAGAGGGGTGCCCGCCCCGGTGTCCCCAAGGCCGTGGTGATGCTCACAGGCGGGAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGGCAATGGCATCTCAGTCTTGGTTATGAGC------GTGGGAGCCGTCCTCAGGGAGGCAGTACGGAGGCTTGCCGGTCCACGCGACTCCCTGATCCATGTGGCAGCTTACACAGACCTTCCGTACCATCAGGACATGCTC---ATCGAGTGGCTATGTAGAG ctttgattaatgagaatgatgtaggtaggattgctcctctcatctggcagGCTGTCAGGCACAATCATTGGAACTTCTATTCCTACTGGATGCCTCAGCTTCAGTGGGGCATGAGAACTTTGCTCACATGCAGAGCTCCATCAGAACATGCACTCTTCGGTTTGATGTAAATCCTGGTGTAACTCATGTT------GTGGTATATGGT---------CGCCCAGCATTTGGGCAAGACATGCATCCTACACGGGCTGCTGTAGTCAGAACCATGAGCCAGAGCCAAGCTCCCTATCTGGGTAGTGGTGGTTCCACTGATGCTGCCCTGCTATATATTGAAGACACAGTGATGATGGATCAGAGGGGCACCCACTCAGGTGTGCCCAATGCTGTGGTAATGGTCACAAGCGGTAGTGGGGCAGAGGATGCAGCAATACCTGCACAGAAATTACGAGGAAATGGCATTTCAGTTCTGGTTAGGAGTGAGCGCATAGGAGCTGTCCTTAAGGAAGCAGTACCAAGGCTTGTCTGTCCCTGTGATTCTTTGATT---GTCGCCGGCTACATAGACCTACCTTACTACCGTGACATGCTCACTGTGGAATGGCTGTGTCGAGgtaagttagcacagatcatattggcaatgcatttccctgggttaactggg #### Wdr74_ID2317_7 --> 0 - 2 Original Alignment GTCCGTGTCTATGATCCAGTCTCCCCCCAGCGCCGGCCAGTCCTAGAGGCCACCTATGGAGAGTACCCACTGACAGCTATGACCCTTACTCCTGAGGGCaa gggctcatgatggcacggcttactttagatttctgttctctctgacacagGTCCGT---TATGACCCAATCTCTTCACAGCAATGTCCGGTTCTTAAAGTTAATTATGGAGAGTCCCCCCTAACGGCTATGTCCTTGACTCCTAAGGCTaagtgagtgtatgtactgagtcctcatcaattaaacttctattagttacctc Alignment from CESAR GTCCGTGTCTATGATCCAGTCTCCCCCCAGCGCCGGCCAGTCCTAGAGGCCACCTATGGAGAGTACCCACTGACAGCTATGACCCTTACTCCTGAGGGCaa gggctcatgatggcacggcttactttagatttctgttctctctgacacagGTCCGT---TATGACCCAATCTCTTCACAGCAATGTCCGGTTCTTAAAGTTAATTATGGAGAGTCCCCCCTAACGGCTATGTCCTTGACTCCTAAGGCTaagtgagtgtatgtactgagtcctcatcaattaaacttctattagttacctc Alignment from Spaln_aa2Genome GTCCGTGTCTATGATCCAGTCTCCCCCCAGCGCCGGCCAGTCCTAGAGGCCACCTATGGAGAGTACCCACTGACAGCTATGACCCTTACTCCTGAGGGCAA gggctcatgatggcacggcttactttagatttctgttctctctgacacagGTCCGT---TATGACCCAATCTCTTCACAGCAATGTCCGGTTCTTAAAGTTAATTATGGAGAGTCCCCCCTAACGGCTATGTCCTTGACTCCTAAGGCTAAgtgagtgtatgtactgagtcctcatcaattaaacttctattagttacctc Alignment from Spaln_nt2Genome GTCCGTGTCTATGATCCAGTCTCCCCCCAGCGCCGGCCAGTCCTAGAGGCCACCTATGGAGAGTACCCACTGACAGCTATGACCCTTACTCCTGAGGGCAA gggctcatgatggcacggcttactttagatttctgttctctctgacacagGTCCGT---TATGACCCAATCTCTTCACAGCAATGTCCGGTTCTTAAAGTTAATTATGGAGAGTCCCCCCTAACGGCTATGTCCTTGACTCCTAAGGCTAAgtgagtgtatgtactgagtcctcatcaattaaacttctattagttacctc Alignment from Pairagon GTCCGTGTCTATGATCCAGTCTCCCCCCAGCGCCGGCCAGTCCTAGAGGCCACCTATGGAGAGTACCCACTGACAGCTATGACCCTTACTCCTGAGGGCAA gggctcatgatggcacggcttactttagatttctgttctctctgacacagGTCCGT---TATGACCCAATCTCTTCACAGCAATGTCCGGTTCTTAAAGTTAATTATGGAGAGTCCCCCCTAACGGCTATGTCCTTGACTCCTAAGGCTAAgtgagtgtatgtactgagtcctcatcaattaaacttctattagttacctc Alignment from Exonerate_protein2genome GTCCGTGTCTATGATCCAGTCTCCCCCCAGCGCCGGCCAGTCCTAGAGGCCACCTATGGAGAGTACCCACTGACAGCTATGACCCTTACTCCTGAGGGCAA gggctcatgatggcacggcttactttagatttctgttctctctgacacagGTCCGT---TATGACCCAATCTCTTCACAGCAATGTCCGGTTCTTAAAGTTAATTATGGAGAGTCCCCCCTAACGGCTATGTCCTTGACTCCTAAGGCTAAgtgagtgtatgtactgagtcctcatcaattaaacttctattagttacctc Alignment from Exonerate_coding2genome GTCCGTGTCTATGATCCAGTCTCCCCCCAGCGCCGGCCAGTCCTAGAGGCCACCTATGGAGAGTACCCACTGACAGCTATGACCCTTACTCCTGAGGGCAA gggctcatgatggcacggcttactttagatttctgttctctctgacacagGTCCGT---TATGACCCAATCTCTTCACAGCAATGTCCGGTTCTTAAAGTTAATTATGGAGAGTCCCCCCTAACGGCTATGTCCTTGACTCCTAAGGCTAAgtgagtgtatgtactgagtcctcatcaattaaacttctattagttacctc Alignment from GeneWise GTCCGTGTCTATGATCCAGTCTCCCCCCAGCGCCGGCCAGTCCTAGAGGCCACCTATGGAGAGTACCCACTGACAGCTATGACCCTTACTCCTGAGGGCAA gggctcatgatggcacggcttactttagatttctgttctctctgacacagGTCCGT---TATGACCCAATCTCTTCACAGCAATGTCCGGTTCTTAAAGTTAATTATGGAGAGTCCCCCCTAACGGCTATGTCCTTGACTCCTAAGGCTAAgtgagtgtatgtactgagtcctcatcaattaaacttctattagttacctc #### Wdr74_ID2318_8 --> 1 - 1 Original Alignment tTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAg taaggcacttcaggagccacataaatcctcacacacaaattttattttagtTCTGTCATTGTGGGGAATACTCATGGTCAGCTGGCAGAGATTGACTTTCGACAAggtgagagtgccattgtgttcttgagaatgaatgtattctgccaaagtaac Alignment from CESAR tTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAg taaggcacttcaggagccacataaatcctcacacacaaattttattttagtTCTGTCATTGTGGGGAATACTCATGGTCAGCTGGCAGAGATTGACTTTCGACAAggtgagagtgccattgtgttcttgagaatgaatgtattctgccaaattttt Alignment from Spaln_aa2Genome TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG taaggcacttcaggagccacataaatcctcacacacaaattttattttagTTCTGTCATTGTGGGGAATACTCATGGTCAGCTGGCAGAGATTGACTTTCGACAAGgtgagagtgccattgtgttcttgagaatgaatgtattctgccaaagtaac Alignment from Spaln_nt2Genome TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG taaggcacttcaggagccacataaatcctcacacacaaattttattttagTTCTGTCATTGTGGGGAATACTCATGGTCAGCTGGCAGAGATTGACTTTCGACAAGgtgagagtgccattgtgttcttgagaatgaatgtattctgccaaagtaac Alignment from Pairagon TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG taaggcacttcaggagccacataaatcctcacacacaaattttattttagTTCTGTCATTGTGGGGAATACTCATGGTCAGCTGGCAGAGATTGACTTTCGACAAGgtgagagtgccattgtgttcttgagaatgaatgtattctgccaaagtaac Alignment from Exonerate_protein2genome TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG taaggcacttcaggagccacataaatcctcacacacaaattttattttagTTCTGTCATTGTGGGGAATACTCATGGTCAGCTGGCAGAGATTGACTTTCGACAAGgtgagagtgccattgtgttcttgagaatgaatgtattctgccaaagtaac Alignment from Exonerate_coding2genome TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG taaggcacttcaggagccacataaatcctcacacacaaattttattttagTTCTGTCATTGTGGGGAATACTCATGGTCAGCTGGCAGAGATTGACTTTCGACAAGgtgagagtgccattgtgttcttgagaatgaatgtattctgccaaagtaac Alignment from GeneWise TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG taaggcacttcaggagccacataaatcctcacacacaaattttattttagTTCTGTCATTGTGGGGAATACTCATGGTCAGCTGGCAGAGATTGACTTTCGACAAGgtgagagtgccattgtgttcttgagaatgaatgtattctgccaaagtaac #### Wdr74_ID2319_9 --> 2 - 0 Original Alignment ggCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG ttcttgagaatgaatgtattctgccaaatttttccttgctttgattaaaggcAGGCTAGTCGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGTTG---TGCCATCCTTCAAAGCCCCTAGTGGCTTCATGTGGCCTGGACAGAATACTGAGGATGCACAGGATACGCAACCCTTGTGGTGTGGAGCACAAGgtaaagctgagcaaacgtagcttagtagtcctagtagtcaggctatgaca Alignment from CESAR ggCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG ttcttgagaatgaatgtattctgccaaatttttccttgctttgattaaaggcAGGCTAGTCGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGTTG---TGCCATCCTTCAAAGCCCCTAGTGGCTTCATGTGGCCTGGACAGAATACTGAGGATGCACAGGATACGCAACCCTTGTGGTGTGGAGCACAAGgtaaagctgagcaaacgtagcttagtagtcctagtagtcaggctatgaca Alignment from Spaln_aa2Genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG ttcttgagaatgaatgtattctgccaaatttttccttgctttgattaaagGCAGGCTAGTCGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGTTG---TGCCATCCTTCAAAGCCCCTAGTGGCTTCATGTGGCCTGGACAGAATACTGAGGATGCACAGGATACGCAACCCTTGTGGTGTGGAGCACAAGgtaaagctgagcaaacgtagcttagtagtcctagtagtcaggctatgaca Alignment from Spaln_nt2Genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG ttcttgagaatgaatgtattctgccaaatttttccttgctttgattaaagGCAGGCTAGTCGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGTT---GTGCCATCCTTCAAAGCCCCTAGTGGCTTCATGTGGCCTGGACAGAATACTGAGGATGCACAGGATACGCAACCCTTGTGGTGTGGAGCACAAGgtaaagctgagcaaacgtagcttagtagtcctagtagtcaggctatgaca Alignment from Pairagon GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG ttcttgagaatgaatgtattctgccaaatttttccttgctttgattaaagGCAGGCTAGTCGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGTT---GTGCCATCCTTCAAAGCCCCTAGTGGCTTCATGTGGCCTGGACAGAATACTGAGGATGCACAGGATACGCAACCCTTGTGGTGTGGAGCACAAGgtaaagctgagcaaacgtagcttagtagtcctagtagtcaggctatgaca Alignment from Exonerate_protein2genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG ttcttgagaatgaatgtattctgccaaatttttccttgctttgattaaagGCAGGCTAGTCGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGTTG---TGCCATCCTTCAAAGCCCCTAGTGGCTTCATGTGGCCTGGACAGAATACTGAGGATGCACAGGATACGCAACCCTTGTGGTGTGGAGCACAAGgtaaagctgagcaaacgtagcttagtagtcctagtagtcaggctatgaca Alignment from Exonerate_coding2genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAGGTTTATCTCAAGTCTCAA ttcttgagaatgaatgtattctgccaaatttttccttgctttgattaaagGCAGGCTAGTCGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGTTG---TGCCATCCTTCAAAGCCCCTAGTGGCTTCATGTGGCCTGGACAGAATACTGAGGATGCACAGGATACGCAACCCTTGTGGTGTGGAGCACAAGGTAAAGCTGAGCAAACGTagcttagtagtcctagtagtcaggctatgaca Alignment from GeneWise GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG ttcttgagaatgaatgtattctgccaaatttttccttgctttgattaaagGCAGGCTAGTCGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGTTG---TGCCATCCTTCAAAGCCCCTAGTGGCTTCATGTGGCCTGGACAGAATACTGAGGATGCACAGGATACGCAACCCTTGTGGTGTGGAGCACAAGgtaaagctgagcaaacgtagcttagtagtcctagtagtcaggctatgaca #### Wdr74_ID2320_10 --> 0 - 0 Original Alignment GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG ctatgacagtcttaagctttacacacccaggctctgtcttcgctccccagGTTTATCTTAAGTGCCAACTTAATTGTCTGCTCCTGTCTGGTCGGGATAATTGGGAGgtaagcgaggaattaataaatataataaggagcagaatcatgcacttatt Alignment from CESAR GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG ctatgacagtcttaagctttacacacccaggctctgtcttcgctccccagGTTTATCTTAAGTGCCAACTTAATTGTCTGCTCCTGTCTGGTCGGGATAATTGGGAGgtaagcgaggaattaataaatataataaggagcagaatcatgcacttatt Alignment from Spaln_aa2Genome GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG ctatgacagtcttaagctttacacacccaggctctgtcttcgctccccagGTTTATCTTAAGTGCCAACTTAATTGTCTGCTCCTGTCTGGTCGGGATAATTGGGAGgtaagcgaggaattaataaatataataaggagcagaatcatgcacttatt Alignment from Spaln_nt2Genome GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG ctatgacagtcttaagctttacacacccaggctctgtcttcgctccccagGTTTATCTTAAGTGCCAACTTAATTGTCTGCTCCTGTCTGGTCGGGATAATTGGGAGgtaagcgaggaattaataaatataataaggagcagaatcatgcacttatt Alignment from Pairagon GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG ctatgacagtcttaagctttacacacccaggctctgtcttcgctccccagGTTTATCTTAAGTGCCAACTTAATTGTCTGCTCCTGTCTGGTCGGGATAATTGGGAGgtaagcgaggaattaataaatataataaggagcagaatcatgcacttatt Alignment from Exonerate_protein2genome GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG ctatgacagtcttaagctttacacacccaggctctgtcttcgctccccagGTTTATCTTAAGTGCCAACTTAATTGTCTGCTCCTGTCTGGTCGGGATAATTGGGAGgtaagcgaggaattaataaatataataaggagcagaatcatgcacttatt Alignment from Exonerate_coding2genome ctatgacagtcttaagctttacacacccaggctctgtcttcgctccccaggtttatcttaagtgccaacttaattgtctgctcctgtctggtcgggataattgggaggtaagcgaggaattaataaatataataaggagcagaatcatgcacttatt Alignment from GeneWise GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG ctatgacagtcttaagctttacacacccaggctctgtcttcgctccccagGTTTATCTTAAGTGCCAACTTAATTGTCTGCTCCTGTCTGGTCGGGATAATTGGGAGgtaagcgaggaattaataaatataataaggagcagaatcatgcacttatt #### Wdr96_ID10338_33 --> 0 - 2 Original Alignment GTGAAGCAGAAGGCAGCCTGCCTCCTGGAAATGACGACTTTTCTCCGGAAGCGGATGGAAGAGGATGACGTAGTGCATCATGAGATCGAAAAAGTGTTCCATGAGCTCATCcg gaaaggtgaatgtatctgcaatgtgtgtcctttctctgcccaccccgcagGTGAAGCAGAAA------TGCCTATCGCAGATGACAACATTTCTTCGCAAGCAGATAGAGGAAGAAGATGTGGTCCACCATGAGATTGAAACAGTCTTCCATAAACTCGTTtggtgtgacgctttgtccctactagtcaggtcttagacaacatgtactctcc Alignment from CESAR GTGAAGCAGAAGGCAGCCTGCCTCCTGGAAATGACGACTTTTCTCCGGAAGCGGATGGAAGAGGATGACGTAGTGCATCATGAGATCGAAAAAGTGTTCCATGAGCTCATCcg gaaaggtgaatgtatctgcaatgtgtgtcctttctctgcccaccccgcagGTGAAGCAGAAA------TGCCTATCGCAGATGACAACATTTCTTCGCAAGCAGATAGAGGAAGAAGATGTGGTCCACCATGAGATTGAAACAGTCTTCCATAAACTCGTTtggtgtgacgctttgtccctactagtcaggtcttagacaacatgtactctcc Alignment from Spaln_aa2Genome TACAAAGTGAAGCAGAAGGCAGCCTGCCTCCTGGAAATGACGACTTTTCTCCGGAAGCGGATGGAAGAGGATGACGTAGTGCATCATGAGATCGAAAAAGTGTTCCATGAGCTCATCCG gaaaggtgaatgtatctgcaatgtgtgtcctttctctgcccaccccgcag------GTGAAGCAGAAA------TGCCTATCGCAGATGACAACATTTCTTCGCAAGCAGATAGAGGAAGAAGATGTGGTCCACCATGAGATTGAAACAGTCTTCCATAAACTCGTTTGgtgtgacgctttgtccctactagtcaggtcttagacaacatgtactctcc Alignment from Spaln_nt2Genome GTGAAGCAGAAGGCAGCCTGCCTCCTGGAAATGACGACTTTTCTCCGGAAGCGGATGGAAGAGGATGACGTAGTGCATCATGAGATCGAAAAAGTGTTCCATGAGCTCATCCG gaaaggtgaatgtatctgcaatgtgtgtcctttctctgcccaccccgcagGTGAAGCAGAA------ATGCCTATCGCAGATGACAACATTTCTTCGCAAGCAGATAGAGGAAGAAGATGTGGTCCACCATGAGATTGAAACAGTCTTCCATAAACTCGTTTGgtgtgacgctttgtccctactagtcaggtcttagacaacatgtactctcc Alignment from Pairagon TACAAAGTGAAGCAGAAGGCAGCCTGCCTCCTGGAAATGACGACTTTTCTCCGGAAGCGGATGGAAGAGGATGACGTAGTGCATCATGAGATCGAAAAAGTGTTCCATGAGCTCATCCG gaaaggtgaatgtatctgcaatgtgtgtcctttctctgcccaccccgcag------GTGAAGCAGAAA------TGCCTATCGCAGATGACAACATTTCTTCGCAAGCAGATAGAGGAAGAAGATGTGGTCCACCATGAGATTGAAACAGTCTTCCATAAACTCGTTTGgtgtgacgctttgtccctactagtcaggtcttagacaacatgtactctcc Alignment from Exonerate_protein2genome TACAAAGTGAAGCAGAAGGCAGCCTGCCTCCTGGAAATGACGACTTTTCTCCGGAAGCGGATGGAAGAGGATGACGTAGTGCATCATGAGATCGAAAAAGTGTTCCATGAGCTCATCCG gaaaggtgaatgtatctgcaatgtgtgtcctttctctgCCCACCCCGCAGGTGAAGCAGAAATGCCTATCGCAGATGACAACATTTCTTCGCAAGCAGATAGAGGAAGAAGATGTGGTCCACCATGAGATTGAAACAGTCTTCCATAAACTCGTTTGgtgtgacgctttgtccctactagtcaggtcttagacaacatgtactctcc Alignment from Exonerate_coding2genome gaaaggtgaatgtatctgcaatgtgtgtcctttctctgcccaccccgcaggtgaagcagaaatgcctatcgcagatgacaacatttcttcgcaagcagatagaggaagaagatgtggtccaccatgagattgaaacagtcttccataaactcgtttggtgtgacgctttgtccctactagtcaggtcttagacaacatgtactctcc Alignment from GeneWise TACAAAGTGAAGCAGAAGGCAGCCTGCCTCCTGGAAATGACGACTTTTCTCCGGAAGCGGATGGAAGAGGATGACGTAGTGCATCATGAGATCGAAAAAGTGTTCCATGAGCTCATCCG gaaaggtgaatgtatctgcaatgtgtgtcctttctctgcccaccccgcagGTGAAGCAGAAA------------TGCCTATCGCAGATGACAACATTTCTTCGCAAGCAGATAGAGGAAGAAGATGTGGTCCACCATGAGATTGAAACAGTCTTCCATAAACTCGTTTGgtgtgacgctttgtccctactagtcaggtcttagacaacatgtactctcc #### Wdr96_ID10342_29 --> 0 - 0 Original Alignment GAGGAACTGAAAATAAACAACATTATATTTTCGTTGCTGCTGGATGAAGAACTCAGCTCCAGGGAACAGTTCCTGAACAACTACCTTTTGAAGAAACAGGAGGAGAAA tatccatagtggagcctacaccagctgttgggtttttttttgttttttagGAAGAACTTAAAATAAACAACATCATAATCTCCTTATTGTTGGATGAGGAATTCAGTTCCAGGGAACAGTTCCTGAACAACTGTCTCTTAAAGAAACAGGAGGAGAAGgtcagccctagcatctggggtagcataaacatagatgccagtcttatgct Alignment from CESAR GAGGAACTGAAAATAAACAACATTATATTTTCGTTGCTGCTGGATGAAGAACTCAGCTCCAGGGAACAGTTCCTGAACAACTACCTTTTGAAGAAACAGGAGGAGAAA tatccatagtggagcctacaccagctgttgggtttttttttgttttttagGAAGAACTTAAAATAAACAACATCATAATCTCCTTATTGTTGGATGAGGAATTCAGTTCCAGGGAACAGTTCCTGAACAACTGTCTCTTAAAGAAACAGGAGGAGAAGgtcagccctagcatctggggtagcataaacatagatgccagtcttatgct Alignment from Spaln_aa2Genome GAGGAACTGAAAATAAACAACATTATATTTTCGTTGCTGCTGGATGAAGAACTCAGCTCCAGGGAACAGTTCCTGAACAACTACCTTTTGAAGAAACAGGAGGAGAAA tatccatagtggagcctacaccagctgttgggtttttttttgttttttagGAAGAACTTAAAATAAACAACATCATAATCTCCTTATTGTTGGATGAGGAATTCAGTTCCAGGGAACAGTTCCTGAACAACTGTCTCTTAAAGAAACAGGAGGAGAAGgtcagccctagcatctggggtagcataaacatagatgccagtcttatgct Alignment from Spaln_nt2Genome GAGGAACTGAAAATAAACAACATTATATTTTCGTTGCTGCTGGATGAAGAACTCAGCTCCAGGGAACAGTTCCTGAACAACTACCTTTTGAAGAAACAGGAGGAGAAA tatccatagtggagcctacaccagctgttgggtttttttttgttttttagGAAGAACTTAAAATAAACAACATCATAATCTCCTTATTGTTGGATGAGGAATTCAGTTCCAGGGAACAGTTCCTGAACAACTGTCTCTTAAAGAAACAGGAGGAGAAGgtcagccctagcatctggggtagcataaacatagatgccagtcttatgct Alignment from Pairagon GAGGAACTGAAAATAAACAACATTATATTTTCGTTGCTGCTGGATGAAGAACTCAGCTCCAGGGAACAGTTCCTGAACAACTACCTTTTGAAGAAACAGGAGGAGAAA tatccatagtggagcctacaccagctgttgggtttttttttgttttttagGAAGAACTTAAAATAAACAACATCATAATCTCCTTATTGTTGGATGAGGAATTCAGTTCCAGGGAACAGTTCCTGAACAACTGTCTCTTAAAGAAACAGGAGGAGAAGgtcagccctagcatctggggtagcataaacatagatgccagtcttatgct Alignment from Exonerate_protein2genome GAGGAACTGAAAATAAACAACATTATATTTTCGTTGCTGCTGGATGAAGAACTCAGCTCCAGGGAACAGTTCCTGAACAACTACCTTTTGAAGAAACAGGAGGAGAAA tatccatagtggagcctacaccagctgttgggtttttttttgttttttagGAAGAACTTAAAATAAACAACATCATAATCTCCTTATTGTTGGATGAGGAATTCAGTTCCAGGGAACAGTTCCTGAACAACTGTCTCTTAAAGAAACAGGAGGAGAAGgtcagccctagcatctggggtagcataaacatagatgccagtcttatgct Alignment from Exonerate_coding2genome GAGGAACTGAAAATAAACAACATTATATTTTCGTTGCTGCTGGATGAAGAACTCAGCTCCAGGGAACAGTTCCTGAACAACTACCTTTTGAAGAAACAGGAGGAGAAA tatccatagtggagcctacaccagctgttgggtttttttttgttttttagGAAGAACTTAAAATAAACAACATCATAATCTCCTTATTGTTGGATGAGGAATTCAGTTCCAGGGAACAGTTCCTGAACAACTGTCTCTTAAAGAAACAGGAGGAGAAGgtcagccctagcatctggggtagcataaacatagatgccagtcttatgct Alignment from GeneWise GAGGAACTGAAAATAAACAACATTATATTTTCGTTGCTGCTGGATGAAGAACTCAGCTCCAGGGAACAGTTCCTGAACAACTACCTTTTGAAGAAACAGGAGGAGAAA tatccatagtggagcctacaccagctgttgggtttttttttgttttttagGAAGAACTTAAAATAAACAACATCATAATCTCCTTATTGTTGGATGAGGAATTCAGTTCCAGGGAACAGTTCCTGAACAACTGTCTCTTAAAGAAACAGGAGGAGAAGgtcagccctagcatctggggtagcataaacatagatgccagtcttatgct #### Wdr96_ID10343_28 --> 0 - 0 Original Alignment TCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAG acatgtgaattttccattcatttctttttgtttctttgttacttgtacagTCCTTGGAAACAGAGCTGAAGAAACTTCAAAATTCGATTCAAGAGACCATGCAGAACTTTGATGATCATCTGCAAAGACTTTTTGAAAGGAGGGTGAAGGCTGAAATGGTTGTTAACCAGgtgacagaccccaccttgcactgactagacctcacaagcatcctctcttg Alignment from CESAR TCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAG acatgtgaattttccattcatttctttttgtttctttgttacttgtacagTCCTTGGAAACAGAGCTGAAGAAACTTCAAAATTCGATTCAAGAGACCATGCAGAACTTTGATGATCATCTGCAAAGACTTTTTGAAAGGAGGGTGAAGGCTGAAATGGTTGTTAACCAGgtgacagaccccaccttgcactgactagacctcacaagcatcctctcttg Alignment from Spaln_aa2Genome TCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAG acatgtgaattttccattcatttctttttgtttctttgttacttgtacagTCCTTGGAAACAGAGCTGAAGAAACTTCAAAATTCGATTCAAGAGACCATGCAGAACTTTGATGATCATCTGCAAAGACTTTTTGAAAGGAGGGTGAAGGCTGAAATGGTTGTTAACCAGgtgacagaccccaccttgcactgactagacctcacaagcatcctctcttg Alignment from Spaln_nt2Genome TCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAG acatgtgaattttccattcatttctttttgtttctttgttacttgtacagTCCTTGGAAACAGAGCTGAAGAAACTTCAAAATTCGATTCAAGAGACCATGCAGAACTTTGATGATCATCTGCAAAGACTTTTTGAAAGGAGGGTGAAGGCTGAAATGGTTGTTAACCAGgtgacagaccccaccttgcactgactagacctcacaagcatcctctcttg Alignment from Pairagon TCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAG acatgtgaattttccattcatttctttttgtttctttgttacttgtacagTCCTTGGAAACAGAGCTGAAGAAACTTCAAAATTCGATTCAAGAGACCATGCAGAACTTTGATGATCATCTGCAAAGACTTTTTGAAAGGAGGGTGAAGGCTGAAATGGTTGTTAACCAGgtgacagaccccaccttgcactgactagacctcacaagcatcctctcttg Alignment from Exonerate_protein2genome TCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAG acatgtgaattttccattcatttctttttgtttctttgttacttgtacagTCCTTGGAAACAGAGCTGAAGAAACTTCAAAATTCGATTCAAGAGACCATGCAGAACTTTGATGATCATCTGCAAAGACTTTTTGAAAGGAGGGTGAAGGCTGAAATGGTTGTTAACCAGgtgacagaccccaccttgcactgactagacctcacaagcatcctctcttg Alignment from Exonerate_coding2genome TCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAG acatgtgaattttccattcatttctttttgtttctttgttacttgtacagTCCTTGGAAACAGAGCTGAAGAAACTTCAAAATTCGATTCAAGAGACCATGCAGAACTTTGATGATCATCTGCAAAGACTTTTTGAAAGGAGGGTGAAGGCTGAAATGGTTGTTAACCAGgtgacagaccccaccttgcactgactagacctcacaagcatcctctcttg Alignment from GeneWise TCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAG acatgtgaattttccattcatttctttttgtttctttgttacttgtacagTCCTTGGAAACAGAGCTGAAGAAACTTCAAAATTCGATTCAAGAGACCATGCAGAACTTTGATGATCATCTGCAAAGACTTTTTGAAAGGAGGGTGAAGGCTGAAATGGTTGTTAACCAGgtgacagaccccaccttgcactgactagacctcacaagcatcctctcttg #### Wdr96_ID10345_26 --> 0 - 0 Original Alignment ATCTCTGATGAACGGCAGAGAGGCCTGATGGATATGATGGGAGGTGTTCTGGAAGTCAAGAAGGAAGACATCTTAAGGATG aaattttaatcaaagcctgtatctatgtcccacagtgtctttctttacagATACCTGATGAACGGCATAGAGGGTTGATGGATATGATGGGTGGTGTACTCGAGGTAAAGACAGAGGACATCTTGAGAATGgtcggtgtttctggaagtctttactgttgagggagagtctagtaggttgt Alignment from CESAR ATCTCTGATGAACGGCAGAGAGGCCTGATGGATATGATGGGAGGTGTTCTGGAAGTCAAGAAGGAAGACATCTTAAGGATG aaattttaatcaaagcctgtatctatgtcccacagtgtctttctttacagATACCTGATGAACGGCATAGAGGGTTGATGGATATGATGGGTGGTGTACTCGAGGTAAAGACAGAGGACATCTTGAGAATGgtcggtgtttctggaagtctttactgttgagggagagtctagtaggttgt Alignment from Spaln_aa2Genome ATCTCTGATGAACGGCAGAGAGGCCTGATGGATATGATGGGAGGTGTTCTGGAAGTCAAGAAGGAAGACATCTTAAGGATG aaattttaatcaaagcctgtatctatgtcccacagtgtctttctttacagATACCTGATGAACGGCATAGAGGGTTGATGGATATGATGGGTGGTGTACTCGAGGTAAAGACAGAGGACATCTTGAGAATGgtcggtgtttctggaagtctttactgttgagggagagtctagtaggttgt Alignment from Spaln_nt2Genome ATCTCTGATGAACGGCAGAGAGGCCTGATGGATATGATGGGAGGTGTTCTGGAAGTCAAGAAGGAAGACATCTTAAGGATG aaattttaatcaaagcctgtatctatgtcccacagtgtctttctttacagATACCTGATGAACGGCATAGAGGGTTGATGGATATGATGGGTGGTGTACTCGAGGTAAAGACAGAGGACATCTTGAGAATGgtcggtgtttctggaagtctttactgttgagggagagtctagtaggttgt Alignment from Pairagon ATCTCTGATGAACGGCAGAGAGGCCTGATGGATATGATGGGAGGTGTTCTGGAAGTCAAGAAGGAAGACATCTTAAGGATG aaattttaatcaaagcctgtatctatgtcccacagtgtctttctttacagATACCTGATGAACGGCATAGAGGGTTGATGGATATGATGGGTGGTGTACTCGAGGTAAAGACAGAGGACATCTTGAGAATGgtcggtgtttctggaagtctttactgttgagggagagtctagtaggttgt Alignment from Exonerate_protein2genome ATCTCTGATGAACGGCAGAGAGGCCTGATGGATATGATGGGAGGTGTTCTGGAAGTCAAGAAGGAAGACATCTTAAGGATG aaattttaatcaaagcctgtatctatgtcccacagtgtctttctttacagATACCTGATGAACGGCATAGAGGGTTGATGGATATGATGGGTGGTGTACTCGAGGTAAAGACAGAGGACATCTTGAGAATGgtcggtgtttctggaagtctttactgttgagggagagtctagtaggttgt Alignment from Exonerate_coding2genome ATCTCTGATGAACGGCAGAGAGGCCTGATGGATATGATGGGAGGTGTTCTGGAAGTCAAGAAGGAAGACATCTTAAGGATG aaattttaatcaaagcctgtatctatgtcccacagtgtctttctttacagATACCTGATGAACGGCATAGAGGGTTGATGGATATGATGGGTGGTGTACTCGAGGTAAAGACAGAGGACATCTTGAGAATGgtcggtgtttctggaagtctttactgttgagggagagtctagtaggttgt Alignment from GeneWise ATCTCTGATGAACGGCAGAGAGGCCTGATGGATATGATGGGAGGTGTTCTGGAAGTCAAGAAGGAAGACATCTTAAGGATG aaattttaatcaaagcctgtatctatgtcccacagtgtctttctttacagATACCTGATGAACGGCATAGAGGGTTGATGGATATGATGGGTGGTGTACTCGAGGTAAAGACAGAGGACATCTTGAGAATGgtcggtgtttctggaagtctttactgttgagggagagtctagtaggttgt #### Wdr96_ID10347_24 --> 0 - 0 Original Alignment GATATCATTTACAATATAAAAAGGAATTTCAATAGTGAATTTGATGCTGCCTATAAGCAAAAAGAGATTGAAATTGCACGTGTAAAAGAAAAGAATGTTAGAATTGCAGAAATTATTTCAGACTTGGAATTGGAAGAAACAGTGTGGCAGCCAGTGTTTGAAGACAGTGAGAAACCAGAAAGAGCCCTTGTCGTGGAAGATGATGAG tgtgattgtaaatgtgctttcattattattgatgcactctttctcggcagGACATTATCTATAACATACGAAGGAATTTTAATAGTGAATTTGATGCCGCATATAAGCCAAAAGAGATCAAAATTGCACGTGTAAAAGAAAAGAATGTAAGGATTGCAGAGATTATCTCAGACCTGGAGTCAGAAGAAACAGTTTGGCAGCCAGTCTTTGAAGACAGTGAGAAGCCAGAAAGAGCAATTGTGGTTGAAGATGATGAGgtgaggactgacaatccactcaattttcttctccatatccccctctatgt Alignment from CESAR GATATCATTTACAATATAAAAAGGAATTTCAATAGTGAATTTGATGCTGCCTATAAGCAAAAAGAGATTGAAATTGCACGTGTAAAAGAAAAGAATGTTAGAATTGCAGAAATTATTTCAGACTTGGAATTGGAAGAAACAGTGTGGCAGCCAGTGTTTGAAGACAGTGAGAAACCAGAAAGAGCCCTTGTCGTGGAAGATGATGAG tgtgattgtaaatgtgctttcattattattgatgcactctttctcggcagGACATTATCTATAACATACGAAGGAATTTTAATAGTGAATTTGATGCCGCATATAAGCCAAAAGAGATCAAAATTGCACGTGTAAAAGAAAAGAATGTAAGGATTGCAGAGATTATCTCAGACCTGGAGTCAGAAGAAACAGTTTGGCAGCCAGTCTTTGAAGACAGTGAGAAGCCAGAAAGAGCAATTGTGGTTGAAGATGATGAGgtgaggactgacaatccactcaattttcttctccatatccccctctatgt Alignment from Spaln_aa2Genome GATATCATTTACAATATAAAAAGGAATTTCAATAGTGAATTTGATGCTGCCTATAAGCAAAAAGAGATTGAAATTGCACGTGTAAAAGAAAAGAATGTTAGAATTGCAGAAATTATTTCAGACTTGGAATTGGAAGAAACAGTGTGGCAGCCAGTGTTTGAAGACAGTGAGAAACCAGAAAGAGCCCTTGTCGTGGAAGATGATGAG tgtgattgtaaatgtgctttcattattattgatgcactctttctcggcagGACATTATCTATAACATACGAAGGAATTTTAATAGTGAATTTGATGCCGCATATAAGCCAAAAGAGATCAAAATTGCACGTGTAAAAGAAAAGAATGTAAGGATTGCAGAGATTATCTCAGACCTGGAGTCAGAAGAAACAGTTTGGCAGCCAGTCTTTGAAGACAGTGAGAAGCCAGAAAGAGCAATTGTGGTTGAAGATGATGAGgtgaggactgacaatccactcaattttcttctccatatccccctctatgt Alignment from Spaln_nt2Genome GATATCATTTACAATATAAAAAGGAATTTCAATAGTGAATTTGATGCTGCCTATAAGCAAAAAGAGATTGAAATTGCACGTGTAAAAGAAAAGAATGTTAGAATTGCAGAAATTATTTCAGACTTGGAATTGGAAGAAACAGTGTGGCAGCCAGTGTTTGAAGACAGTGAGAAACCAGAAAGAGCCCTTGTCGTGGAAGATGATGAG tgtgattgtaaatgtgctttcattattattgatgcactctttctcggcagGACATTATCTATAACATACGAAGGAATTTTAATAGTGAATTTGATGCCGCATATAAGCCAAAAGAGATCAAAATTGCACGTGTAAAAGAAAAGAATGTAAGGATTGCAGAGATTATCTCAGACCTGGAGTCAGAAGAAACAGTTTGGCAGCCAGTCTTTGAAGACAGTGAGAAGCCAGAAAGAGCAATTGTGGTTGAAGATGATGAGgtgaggactgacaatccactcaattttcttctccatatccccctctatgt Alignment from Pairagon GATATCATTTACAATATAAAAAGGAATTTCAATAGTGAATTTGATGCTGCCTATAAGCAAAAAGAGATTGAAATTGCACGTGTAAAAGAAAAGAATGTTAGAATTGCAGAAATTATTTCAGACTTGGAATTGGAAGAAACAGTGTGGCAGCCAGTGTTTGAAGACAGTGAGAAACCAGAAAGAGCCCTTGTCGTGGAAGATGATGAG tgtgattgtaaatgtgctttcattattattgatgcactctttctcggcagGACATTATCTATAACATACGAAGGAATTTTAATAGTGAATTTGATGCCGCATATAAGCCAAAAGAGATCAAAATTGCACGTGTAAAAGAAAAGAATGTAAGGATTGCAGAGATTATCTCAGACCTGGAGTCAGAAGAAACAGTTTGGCAGCCAGTCTTTGAAGACAGTGAGAAGCCAGAAAGAGCAATTGTGGTTGAAGATGATGAGgtgaggactgacaatccactcaattttcttctccatatccccctctatgt Alignment from Exonerate_protein2genome GATATCATTTACAATATAAAAAGGAATTTCAATAGTGAATTTGATGCTGCCTATAAGCAAAAAGAGATTGAAATTGCACGTGTAAAAGAAAAGAATGTTAGAATTGCAGAAATTATTTCAGACTTGGAATTGGAAGAAACAGTGTGGCAGCCAGTGTTTGAAGACAGTGAGAAACCAGAAAGAGCCCTTGTCGTGGAAGATGATGAG tgtgattgtaaatgtgctttcattattattgatgcactctttctcggcagGACATTATCTATAACATACGAAGGAATTTTAATAGTGAATTTGATGCCGCATATAAGCCAAAAGAGATCAAAATTGCACGTGTAAAAGAAAAGAATGTAAGGATTGCAGAGATTATCTCAGACCTGGAGTCAGAAGAAACAGTTTGGCAGCCAGTCTTTGAAGACAGTGAGAAGCCAGAAAGAGCAATTGTGGTTGAAGATGATGAGgtgaggactgacaatccactcaattttcttctccatatccccctctatgt Alignment from Exonerate_coding2genome GATATCATTTACAATATAAAAAGGAATTTCAATAGTGAATTTGATGCTGCCTATAAGCAAAAAGAGATTGAAATTGCACGTGTAAAAGAAAAGAATGTTAGAATTGCAGAAATTATTTCAGACTTGGAATTGGAAGAAACAGTGTGGCAGCCAGTGTTTGAAGACAGTGAGAAACCAGAAAGAGCCCTTGTCGTGGAAGATGATGAG tgtgattgtaaatgtgctttcattattattgatgcactctttctcggcagGACATTATCTATAACATACGAAGGAATTTTAATAGTGAATTTGATGCCGCATATAAGCCAAAAGAGATCAAAATTGCACGTGTAAAAGAAAAGAATGTAAGGATTGCAGAGATTATCTCAGACCTGGAGTCAGAAGAAACAGTTTGGCAGCCAGTCTTTGAAGACAGTGAGAAGCCAGAAAGAGCAATTGTGGTTGAAGATGATGAGgtgaggactgacaatccactcaattttcttctccatatccccctctatgt Alignment from GeneWise GATATCATTTACAATATAAAAAGGAATTTCAATAGTGAATTTGATGCTGCCTATAAGCAAAAAGAGATTGAAATTGCACGTGTAAAAGAAAAGAATGTTAGAATTGCAGAAATTATTTCAGACTTGGAATTGGAAGAAACAGTGTGGCAGCCAGTGTTTGAAGACAGTGAGAAACCAGAAAGAGCCCTTGTCGTGGAAGATGATGAG tgtgattgtaaatgtgctttcattattattgatgcactctttctcggcagGACATTATCTATAACATACGAAGGAATTTTAATAGTGAATTTGATGCCGCATATAAGCCAAAAGAGATCAAAATTGCACGTGTAAAAGAAAAGAATGTAAGGATTGCAGAGATTATCTCAGACCTGGAGTCAGAAGAAACAGTTTGGCAGCCAGTCTTTGAAGACAGTGAGAAGCCAGAAAGAGCAATTGTGGTTGAAGATGATGAGgtgaggactgacaatccactcaattttcttctccatatccccctctatgt #### Wdr96_ID10350_21 --> 0 - 0 Original Alignment ATAAGGAAAGATGTGGAGATGCACAACTTGGCCCAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCTGTGAAGGGCCGGGCTCTAAAG gcagaattttgtttcacatccttcctttctttttttttctccttttgcagTTAAGGAAGGGTGTTGAGATGCACAATTTAACACAGAGCTACATAACGGAACTTATTAAGGAAGAGTGTTGGACCTCCATGGTTGTCAAAGGACGAGCACTGCGAgtgagttccaactgctagtgcatgcaaatatgttgcctgaggtgtggcta Alignment from CESAR ATAAGGAAAGATGTGGAGATGCACAACTTGGCCCAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCTGTGAAGGGCCGGGCTCTAAAG gcagaattttgtttcacatccttcctttctttttttttctccttttgcagTTAAGGAAGGGTGTTGAGATGCACAATTTAACACAGAGCTACATAACGGAACTTATTAAGGAAGAGTGTTGGACCTCCATGGTTGTCAAAGGACGAGCACTGCGAgtgagttccaactgctagtgcatgcaaatatgttgcctgaggtgtggcta Alignment from Spaln_aa2Genome ATAAGGAAAGATGTGGAGATGCACAACTTGGCCCAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCTGTGAAGGGCCGGGCTCTAAAG gcagaattttgtttcacatccttcctttctttttttttctccttttgcagTTAAGGAAGGGTGTTGAGATGCACAATTTAACACAGAGCTACATAACGGAACTTATTAAGGAAGAGTGTTGGACCTCCATGGTTGTCAAAGGACGAGCACTGCGAgtgagttccaactgctagtgcatgcaaatatgttgcctgaggtgtggcta Alignment from Spaln_nt2Genome -TAAGGAAAGATGTGGAGATGCACAACTTGGCCCAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCTGTGAAGGGCCGGGCTCTAAAG gcagaattttgtttcacatccttcctttctttttttttctccttttgcagTTAAGGAAGGGTGTTGAGATGCACAATTTAACACAGAGCTACATAACGGAACTTATTAAGGAAGAGTGTTGGACCTCCATGGTTGTCAAAGGACGAGCACTGCGAgtgagttccaactgctagtgcatgcaaatatgttgcctgaggtgtggcta Alignment from Pairagon ATAAGGAAAGATGTGGAGATGCACAACTTGGCCCAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCTGTGAAGGGCCGGGCTCT gcagaattttgtttcacatccttcctttctttttttttctccttttgcagTTAAGGAAGGGTGTTGAGATGCACAATTTAACACAGAGCTACATAACGGAACTTATTAAGGAAGAGTGTTGGACCTCCATGGTTGTCAAAGGACGAGCACTgcgagtgagttccaactgctagtgcatgcaaatatgttgcctgaggtgtggcta Alignment from Exonerate_protein2genome ATAAGGAAAGATGTGGAGATGCACAACTTGGCCCAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCTGTGAAGGGCCGGGCTCTAAAG gcagaattttgtttcacatccttcctttctttttttttctccttttgcagTTAAGGAAGGGTGTTGAGATGCACAATTTAACACAGAGCTACATAACGGAACTTATTAAGGAAGAGTGTTGGACCTCCATGGTTGTCAAAGGACGAGCACTGCGAgtgagttccaactgctagtgcatgcaaatatgttgcctgaggtgtggcta Alignment from Exonerate_coding2genome ATAAGGAAAGATGTGGAGATGCACAACTTGGCCCAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCTGTGAAGGGCCGGGCTCTAAAG gcagaattttgtttcacatccttcctttctttttttttctccttttgcagTTAAGGAAGGGTGTTGAGATGCACAATTTAACACAGAGCTACATAACGGAACTTATTAAGGAAGAGTGTTGGACCTCCATGGTTGTCAAAGGACGAGCACTGCGAgtgagttccaactgctagtgcatgcaaatatgttgcctgaggtgtggcta Alignment from GeneWise ---AGGAAAGATGTGGAGATGCACAACTTGGCCCAGAGCTACTTAACTGAGCTCATCAAGGAGGAGTGCTGGAACTCCATGGCTGTGAAGGGCCGGGCTCTAAAG gcagaattttgtttcacatccttcctttctttttttttctccttttgcagTTAAGGAAGGGTGTTGAGATGCACAATTTAACACAGAGCTACATAACGGAACTTATTAAGGAAGAGTGTTGGACCTCCATGGTTGTCAAAGGACGAGCACTGCGAgtgagttccaactgctagtgcatgcaaatatgttgcctgaggtgtggcta #### Wdr96_ID10351_20 --> 0 - 0 Original Alignment ATTGCAATGATGATGGAAGAGAATGAAAAGGTGGACATCATTGCAAAACTAGATGAACAGGAGTTTTGCCTGGACGCCGATGAGCTGGAAAGGCTTCATGATGAATGTGAGGAGGAAGTAGCG---AAG tcatgtttttcacagttctggtctcagtggaacactcatctttcattcagATTGCAATGATGATGGAAGAGAATGACAAGGTTGACATTATTGCAAAGTTAGATGATCAGGAGTTCTGTCTGGATGCAGATGAACTGGAAAGATTTCATGATGAATGTGACGAGGAAGTTTCAAAGAAGgtaagcggtttctcacaccccactcttaagggttgccagggaagatagct Alignment from CESAR ATTGCAATGATGATGGAAGAGAATGAAAAGGTGGACATCATTGCAAAACTAGATGAACAGGAGTTTTGCCTGGACGCCGATGAGCTGGAAAGGCTTCATGATGAATGTGAGGAGGAAGTAGCG---AAG tcatgtttttcacagttctggtctcagtggaacactcatctttcattcagATTGCAATGATGATGGAAGAGAATGACAAGGTTGACATTATTGCAAAGTTAGATGATCAGGAGTTCTGTCTGGATGCAGATGAACTGGAAAGATTTCATGATGAATGTGACGAGGAAGTTTCAAAGAAGgtaagcggtttctcacaccccactcttaagggttgccagggaagatagct Alignment from Spaln_aa2Genome ATTGCAATGATGATGGAAGAGAATGAAAAGGTGGACATCATTGCAAAACTAGATGAACAGGAGTTTTGCCTGGACGCCGATGAGCTGGAAAGGCTTCATGATGAATGTGAGGAGGAAGTAGCG---AAG tcatgtttttcacagttctggtctcagtggaacactcatctttcattcagATTGCAATGATGATGGAAGAGAATGACAAGGTTGACATTATTGCAAAGTTAGATGATCAGGAGTTCTGTCTGGATGCAGATGAACTGGAAAGATTTCATGATGAATGTGACGAGGAAGTTTCAAAGAAGgtaagcggtttctcacaccccactcttaagggttgccagggaagatagct Alignment from Spaln_nt2Genome ATTGCAATGATGATGGAAGAGAATGAAAAGGTGGACATCATTGCAAAACTAGATGAACAGGAGTTTTGCCTGGACGCCGATGAGCTGGAAAGGCTTCATGATGAATGTGAGGAGGAAGTAGCGAAGA-- tcatgtttttcacagttctggtctcagtggaacactcatctttcattcagATTGCAATGATGATGGAAGAGAATGACAAGGTTGACATTATTGCAAAGTTAGATGATCAGGAGTTCTGTCTGGATGCAGATGAACTGGAAAGATTTCATGATGAATGTGACGAGGAAGTTTCAAAGAAGgtaagcggtttctcacaccccactcttaagggttgccagggaagatagct Alignment from Pairagon ATTGCAATGATGATGGAAGAGAATGAAAAGGTGGACATCATTGCAAAACTAGATGAACAGGAGTTTTGCCTGGACGCCGATGAGCTGGAAAGGCTTCATGATGAATGTGAGGAGGAAGT---AGCGAAG tcatgtttttcacagttctggtctcagtggaacactcatctttcattcagATTGCAATGATGATGGAAGAGAATGACAAGGTTGACATTATTGCAAAGTTAGATGATCAGGAGTTCTGTCTGGATGCAGATGAACTGGAAAGATTTCATGATGAATGTGACGAGGAAGTTTCAAAGAAGgtaagcggtttctcacaccccactcttaagggttgccagggaagatagct Alignment from Exonerate_protein2genome ATTGCAATGATGATGGAAGAGAATGAAAAGGTGGACATCATTGCAAAACTAGATGAACAGGAGTTTTGCCTGGACGCCGATGAGCTGGAAAGGCTTCATGATGAATGTGAGGAGGAAGTAGCG---AAG tcatgtttttcacagttctggtctcagtggaacactcatctttcattcagATTGCAATGATGATGGAAGAGAATGACAAGGTTGACATTATTGCAAAGTTAGATGATCAGGAGTTCTGTCTGGATGCAGATGAACTGGAAAGATTTCATGATGAATGTGACGAGGAAGTTTCAAAGAAGgtaagcggtttctcacaccccactcttaagggttgccagggaagatagct Alignment from Exonerate_coding2genome TTTCCCCTAGAAGAAAGGAGATCAAAAGAGGAATTAAGGAGCTCGCTCAGGTTATTGCAATGATGATGGAAGAGAATGAAAAGGTGGACATCATTGCAAAACTAGATGAACAGGAGTTTTGCCTGGACGCCGATGAGCTGGAAAGGCTTCATGATGAATGTGAGGAGGAAGTAGCG---AAG TCATGTTTTTCACAGTTCTGGTCTCAGTGGAACACTCATCTTTCATTCAGATTGCAATGATGATGGAAGAG---AATGACAAGGTTGACATTATTGCAAAGTTAGATGATCAGGAGTTCTGTCTGGATGCAGATGAACTGGAAAGATTTCATGATGAATGTGACGAGGAAGTTTCAAAGAAGgtaagcggtttctcacaccccactcttaagggttgccagggaagatagct Alignment from GeneWise ATTGCAATGATGATGGAAGAGAATGAAAAGGTGGACATCATTGCAAAACTAGATGAACAGGAGTTTTGCCTGGACGCCGATGAGCTGGAAAGGCTTCATGATGAATGTGAGGAGGAAGTAGCGAAGATA tcatgtttttcacagttctggtctcagtggaacactcatctttcattcagATTGCAATGATGATGGAAGAGAATGACAAGGTTGACATTATTGCAAAGTTAGATGATCAGGAGTTCTGTCTGGATGCAGATGAACTGGAAAGATTTCATGATGAATGTGACGAGGAAGTTTCAAAGAAGgtaagcggtttctcacaccccactcttaagggttgccagggaagatagct #### Wdr96_ID10353_18 --> 0 - 0 Original Alignment AAACACCTGAACTCAGACTCATCAGAAGAGGAAGCAGTCATCGATCACAAGATGATTCCCTGGATCCAACAAAAAATGGAAGAG acttatacaatatagataaatatatccacacctctgctgccttcctgcagAAACACCTGAACTCAGAGTCATCAGAAGAAGAGGCTGTTATTGATCACAAGATGATTCCCTGGATCCAACAAAAAATAGAGGAGgtacgtgcatactgcactaacactgtgataacctttattcctgtttgcct Alignment from CESAR AAACACCTGAACTCAGACTCATCAGAAGAGGAAGCAGTCATCGATCACAAGATGATTCCCTGGATCCAACAAAAAATGGAAGAG acttatacaatatagataaatatatccacacctctgctgccttcctgcagAAACACCTGAACTCAGAGTCATCAGAAGAAGAGGCTGTTATTGATCACAAGATGATTCCCTGGATCCAACAAAAAATAGAGGAGgtacgtgcatactgcactaacactgtgataacctttattcctgtttgcct Alignment from Spaln_aa2Genome AAACACCTGAACTCAGACTCATCAGAAGAGGAAGCAGTCATCGATCACAAGATGATTCCCTGGATCCAACAAAAAATGGAAGAG acttatacaatatagataaatatatccacacctctgctgccttcctgcagAAACACCTGAACTCAGAGTCATCAGAAGAAGAGGCTGTTATTGATCACAAGATGATTCCCTGGATCCAACAAAAAATAGAGGAGgtacgtgcatactgcactaacactgtgataacctttattcctgtttgcct Alignment from Spaln_nt2Genome AAACACCTGAACTCAGACTCATCAGAAGAGGAAGCAGTCATCGATCACAAGATGATTCCCTGGATCCAACAAAAAATGGAAGAG acttatacaatatagataaatatatccacacctctgctgccttcctgcagAAACACCTGAACTCAGAGTCATCAGAAGAAGAGGCTGTTATTGATCACAAGATGATTCCCTGGATCCAACAAAAAATAGAGGAGgtacgtgcatactgcactaacactgtgataacctttattcctgtttgcct Alignment from Pairagon AAACACCTGAACTCAGACTCATCAGAAGAGGAAGCAGTCATCGATCACAAGATGATTCCCTGGATCCAACAAAAAATGGAAGAG acttatacaatatagataaatatatccacacctctgctgccttcctgcagAAACACCTGAACTCAGAGTCATCAGAAGAAGAGGCTGTTATTGATCACAAGATGATTCCCTGGATCCAACAAAAAATAGAGGAGgtacgtgcatactgcactaacactgtgataacctttattcctgtttgcct Alignment from Exonerate_protein2genome AAACACCTGAACTCAGACTCATCAGAAGAGGAAGCAGTCATCGATCACAAGATGATTCCCTGGATCCAACAAAAAATGGAAGAG acttatacaatatagataaatatatccacacctctgctgccttcctgcagAAACACCTGAACTCAGAGTCATCAGAAGAAGAGGCTGTTATTGATCACAAGATGATTCCCTGGATCCAACAAAAAATAGAGGAGgtacgtgcatactgcactaacactgtgataacctttattcctgtttgcct Alignment from Exonerate_coding2genome acttatacaatatagataaatatatccacacctctgctgccttcctgcagaaacacctgaactcagagtcatcagaagaagaggctgttattgatcacaagatgattccctggatccaacaaaaaatagaggaggtacgtgcatactgcactaacactgtgataacctttattcctgtttgcct Alignment from GeneWise AAACACCTGAACTCAGACTCATCAGAAGAGGAAGCAGTCATCGATCACAAGATGATTCCCTGGATCCAACAAAAAATGGAAGAG acttatacaatatagataaatatatccacacctctgctgccttcctgcagAAACACCTGAACTCAGAGTCATCAGAAGAAGAGGCTGTTATTGATCACAAGATGATTCCCTGGATCCAACAAAAAATAGAGGAGgtacgtgcatactgcactaacactgtgataacctttattcctgtttgcct #### Wdr96_ID10355_16 --> 0 - 2 Original Alignment GAAACCTTTGTTCGATGTCGGAGTCATTCTCACCAGGGGCGAGGGATCCAGAACATGAAAATGTCATTGGACGGACAGCACATCCTGGTGAATGGAAAAGATGACAACACCCTTGTCTGCCTCAAATGGaa ggttgaagctctcttgtctgaaatagaacgttttcatttgggtcttgcagGAGACGTCTGTTCGATGCCGGAGTTACTCTCATCAGGGACAGGGGCTCCAGAACATGAAAATGTCATTA---GGTCAACACATTTTGGTGAATGGAAAAGATGATAATGCCCTTGTATGTCTCAAGCTGaagtaagaataacaaagtataaccaatccacaactccacaacaaccaaagca Alignment from CESAR GAAACCTTTGTTCGATGTCGGAGTCATTCTCACCAGGGGCGAGGGATCCAGAACATGAAAATGTCATTGGACGGACAGCACATCCTGGTGAATGGAAAAGATGACAACACCCTTGTCTGCCTCAAATGGaa ggttgaagctctcttgtctgaaatagaacgttttcatttgggtcttgcagGAGACGTCTGTTCGATGCCGGAGTTACTCTCATCAGGGACAGGGGCTCCAGAACATGAAAATGTCATTA---GGTCAACACATTTTGGTGAATGGAAAAGATGATAATGCCCTTGTATGTCTCAAGCTGaagtaagaataacaaagtataaccaatccacaactccacaacaaccaaagca Alignment from Spaln_aa2Genome GAAACCTTTGTTCGATGTCGGAGTCATTCTCACCAGGGGCGAGGGATCCAGAACATGAAAATGTCATTGGACGGACAGCACATCCTGGTGAATGGAAAAGATGACAACACCCTTGTCTGCCTCAAATGGAA ggttgaagctctcttgtctgaaatagaacgttttcatttgggtcttgcagGAGACGTCTGTTCGATGCCGGAGTTACTCTCATCAGGGACAGGGGCTCCAGAACATGAAAATGTCATTA---GGTCAACACATTTTGGTGAATGGAAAAGATGATAATGCCCTTGTATGTCTCAAGCTGAAgtaagaataacaaagtataaccaatccacaactccacaacaaccaaagca Alignment from Spaln_nt2Genome GAAACCTTTGTTCGATGTCGGAGTCATTCTCACCAGGGGCGAGGGATCCAGAACATGAAAATGTCATTGGACGGACAGCACATCCTGGTGAATGGAAAAGATGACAACACCCTTGTCTGCCTCAAATGGAA ggttgaagctctcttgtctgaaatagaacgttttcatttgggtcttgcagGAGACGTCTGTTCGATGCCGGAGTTACTCTCATCAGGGACAGGGGCTCCAGAACATGAAAATGTCATT---AGGTCAACACATTTTGGTGAATGGAAAAGATGATAATGCCCTTGTATGTCTCAAGCTGAAgtaagaataacaaagtataaccaatccacaactccacaacaaccaaagca Alignment from Pairagon GAAACCTTTGTTCGATGTCGGAGTCATTCTCACCAGGGGCGAGGGATCCAGAACATGAAAATGTCATTGGACGGACAGCACATCCTGGTGAATGGAAAAGATGACAACACCCTTGTCTGCCTCAAATGGAA ggttgaagctctcttgtctgaaatagaacgttttcatttgggtcttgcagGAGACGTCTGTTCGATGCCGGAGTTACTCTCATCAGGGACAGGGGCTCCAGAACATGAAAATGTCATTA---GGTCAACACATTTTGGTGAATGGAAAAGATGATAATGCCCTTGTATGTCTCAAGCTGAAgtaagaataacaaagtataaccaatccacaactccacaacaaccaaagca Alignment from Exonerate_protein2genome GAAACCTTTGTTCGATGTCGGAGTCATTCTCACCAGGGGCGAGGGATCCAGAACATGAAAATGTCATTGGACGGACAGCACATCCTGGTGAATGGAAAAGATGACAACACCCTTGTCTGCCTCAAATGGAA ggttgaagctctcttgtctgaaatagaacgttttcatttgggtcttgcagGAGACGTCTGTTCGATGCCGGAGTTACTCTCATCAGGGACAGGGGCTCCAGAACATGAAAATGTCATTA---GGTCAACACATTTTGGTGAATGGAAAAGATGATAATGCCCTTGTATGTCTCAAGCTGAAgtaagaataacaaagtataaccaatccacaactccacaacaaccaaagca Alignment from Exonerate_coding2genome ggttgaagctctcttgtctgaaatagaacgttttcatttgggtcttgcaggagacgtctgttcgatgccggagttactctcatcagggacaggggctccagaacatgaaaatgtcattaggtcaacacattttggtgaatggaaaagatgataatgcccttgtatgtctcaagctgaagtaagaataacaaagtataaccaatccacaactccacaacaaccaaagca Alignment from GeneWise ---ACCTTTGTTCGATGTCGGAGTCATTCTCACCAGGGGCGAGGGATCCAGAACATGAAAATGTCATTGGACGGACAGCACATCCTGGTGAATGGAAAAGATGACAACACCCTTGTCTGCCTCAAATGGAA ggttgaagctctcttgtctgaaatagaacgttttcatttgggtcttgcagGAGACGTCTGTTCGATGCCGGAGTTACTCTCATCAGGGACAGGGGCTCCAGAACATGAAAATGTCATTA---GGTCAACACATTTTGGTGAATGGAAAAGATGATAATGCCCTTGTATGTCTCAAGCTGAAgtaagaataacaaagtataaccaatccacaactccacaacaaccaaagca #### Wdr96_ID10358_13 --> 2 - 1 Original Alignment agACGGGCAAGGACATCCTGCAGATATCCACGGTGTCTGTCATGGAGTCAGATGTGGTCGAAGTGCTGGTGTTGTACCCGCTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACCCTGCCAGTCATGTTACCAGAAg gtctattctccttcctatgtctacaaagtttcattttattcatgccccagacACCGGTAAGGACATCAAATATATATCCACCATATCAGTAATGAAATCAGATGTAGTAGCTGTCTTAGTCTTGTATCCGCTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACTCTACCAGTTATGTTACCAGAGggtgagattaacttgatccccaccctgtgataaagtgacattccgtgtccc Alignment from CESAR agACGGGCAAGGACATCCTGCAGATATCCACGGTGTCTGTCATGGAGTCAGATGTGGTCGAAGTGCTGGTGTTGTACCCGCTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACCCTGCCAGTCATGTTACCAGAAg gtctattctccttcctatgtctacaaagtttcattttattcatgccccagacACCGGTAAGGACATCAAATATATATCCACCATATCAGTAATGAAATCAGATGTAGTAGCTGTCTTAGTCTTGTATCCGCTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACTCTACCAGTTATGTTACCAGAGggtgagattaacttgatccccaccctgtgataaagtgacattccgtgtccc Alignment from Spaln_aa2Genome AGACGGGCAAGGACATCCTGCAGATATCCACGGTGTCTGTCATGGAGTCAGATGTGGTCGAAGTGCTGGTGTTGTACCCGCTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACCCTGCCAGTCATGTTACCAGAAG gtctattctccttcctatgtctacaaagtttcattttattcatgccccagACACCGGTAAGGACATCAAATATATATCCACCATATCAGTAATGAAATCAGATGTAGTAGCTGTCTTAGTCTTGTATCCGCTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACTCTACCAGTTATGTTACCAGAGGgtgagattaacttgatccccaccctgtgataaagtgacattccgtgtccc Alignment from Spaln_nt2Genome AGACGGGCAAGGACATCCTGCAGATATCCACGGTGTCTGTCATGGAGTCAGATGTGGTCGAAGTGCTGGTGTTGTACCCGCTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACCCTGCCAGTCATGTTACCAGAAG gtctattctccttcctatgtctacaaagtttcattttattcatgccccagACACCGGTAAGGACATCAAATATATATCCACCATATCAGTAATGAAATCAGATGTAGTAGCTGTCTTAGTCTTGTATCCGCTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACTCTACCAGTTATGTTACCAGAGGgtgagattaacttgatccccaccctgtgataaagtgacattccgtgtccc Alignment from Pairagon AGACGGGCAAGGACATCCTGCAGATATCCACGGTGTCTGTCATGGAGTCAGATGTGGTCGAAGTGCTGGTGTTGTACCCGCTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACCCTGCCAGTCATGTTACCAGAAG gtctattctccttcctatgtctacaaagtttcattttattcatgccccagACACCGGTAAGGACATCAAATATATATCCACCATATCAGTAATGAAATCAGATGTAGTAGCTGTCTTAGTCTTGTATCCGCTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACTCTACCAGTTATGTTACCAGAGGgtgagattaacttgatccccaccctgtgataaagtgacattccgtgtccc Alignment from Exonerate_protein2genome AGACGGGCAAGGACATCCTGCAGATATCCACGGTGTCTGTCATGGAGTCAGATGTGGTCGAAGTGCTGGTGTTGTACCCGCTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACCCTGCCAGTCATGTTACCAGAAG gtctattctccttcctatgtctacaaagtttcattttattcatgccccagACACCGGTAAGGACATCAAATATATATCCACCATATCAGTAATGAAATCAGATGTAGTAGCTGTCTTAGTCTTGTATCCGCTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACTCTACCAGTTATGTTACCAGAGGgtgagattaacttgatccccaccctgtgataaagtgacattccgtgtccc Alignment from Exonerate_coding2genome AGACGGGCAAGGACATCCTGCAGATATCCACGGTGTCTGTCATGGAGTCAGATGTGGTCGAAGTGCTGGTGTTGTACCCGCTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACCCTGCCAGTCATGTTACCAGAAG gtctattctccttcctatgtctacaaagtttcattttattcatgccccagACACCGGTAAGGACATCAAATATATATCCACCATATCAGTAATGAAATCAGATGTAGTAGCTGTCTTAGTCTTGTATCCGCTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACTCTACCAGTTATGTTACCAGAGGgtgagattaacttgatccccaccctgtgataaagtgacattccgtgtccc Alignment from GeneWise AGACGGGCAAGGACATCCTGCAGATATCCACGGTGTCTGTCATGGAGTCAGATGTGGTCGAAGTGCTGGTGTTGTACCCGCTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACCCTGCCAGTCATGTTACCAGAAG gtctattctccttcctatgtctacaaagtttcattttattcatgccccagACACCGGTAAGGACATCAAATATATATCCACCATATCAGTAATGAAATCAGATGTAGTAGCTGTCTTAGTCTTGTATCCGCTTCCAGATATGGGCAGAAGCAGGCTGGAATACTTCACTCTACCAGTTATGTTACCAGAGGgtgagattaacttgatccccaccctgtgataaagtgacattccgtgtccc #### Wdr96_ID10359_12 --> 1 - 1 Original Alignment gTATGACCAGCGAGGAATCTTTCTGTTAGTTGGTACAGAGGAAGGAAACATCTTTGTCATCGATGCCAGACCCTCAAAGTCATTTCAAATTTTTGGATTCACTg tgactaataggctccatagtaatttccaccattctttctgtgtggcccaggTATGACCAACGAGCAATATTCCTATTAGTTGGTGCAGAAGAAGGTAACATTTTTGTTATTGACACCAGACCTGCAAAGACACATCAAATTTTTGGGTTCACCggtgatatgtgggagctgctcatgtgaaccattgtagtgtttaggggtttt Alignment from CESAR gTATGACCAGCGAGGAATCTTTCTGTTAGTTGGTACAGAGGAAGGAAACATCTTTGTCATCGATGCCAGACCCTCAAAGTCATTTCAAATTTTTGGATTCACTg tgactaataggctccatagtaatttccaccattctttctgtgtggcccaggTATGACCAACGAGCAATATTCCTATTAGTTGGTGCAGAAGAAGGTAACATTTTTGTTATTGACACCAGACCTGCAAAGACACATCAAATTTTTGGGTTCACCggtgatatgtgggagctgctcatgtgaaccattgtagtgtttaggggtttt Alignment from Spaln_aa2Genome GTATGACCAGCGAGGAATCTTTCTGTTAGTTGGTACAGAGGAAGGAAACATCTTTGTCATCGATGCCAGACCCTCAAAGTCATTTCAAATTTTTGGATTCACTG tgactaataggctccatagtaatttccaccattctttctgtgtggcccagGTATGACCAACGAGCAATATTCCTATTAGTTGGTGCAGAAGAAGGTAACATTTTTGTTATTGACACCAGACCTGCAAAGACACATCAAATTTTTGGGTTCACCGgtgatatgtgggagctgctcatgtgaaccattgtagtgtttaggggtttt Alignment from Spaln_nt2Genome GTATGACCAGCGAGGAATCTTTCTGTTAGTTGGTACAGAGGAAGGAAACATCTTTGTCATCGATGCCAGACCCTCAAAGTCATTTCAAATTTTTGGATTCACTG tgactaataggctccatagtaatttccaccattctttctgtgtggcccagGTATGACCAACGAGCAATATTCCTATTAGTTGGTGCAGAAGAAGGTAACATTTTTGTTATTGACACCAGACCTGCAAAGACACATCAAATTTTTGGGTTCACCGgtgatatgtgggagctgctcatgtgaaccattgtagtgtttaggggtttt Alignment from Pairagon GTATGACCAGCGAGGAATCTTTCTGTTAGTTGGTACAGAGGAAGGAAACATCTTTGTCATCGATGCCAGACCCTCAAAGTCATTTCAAATTTTTGGATTCACTG tgactaataggctccatagtaatttccaccattctttctgtgtggcccagGTATGACCAACGAGCAATATTCCTATTAGTTGGTGCAGAAGAAGGTAACATTTTTGTTATTGACACCAGACCTGCAAAGACACATCAAATTTTTGGGTTCACCGgtgatatgtgggagctgctcatgtgaaccattgtagtgtttaggggtttt Alignment from Exonerate_protein2genome GTATGACCAGCGAGGAATCTTTCTGTTAGTTGGTACAGAGGAAGGAAACATCTTTGTCATCGATGCCAGACCCTCAAAGTCATTTCAAATTTTTGGATTCACTG tgactaataggctccatagtaatttccaccattctttctgtgtggcccagGTATGACCAACGAGCAATATTCCTATTAGTTGGTGCAGAAGAAGGTAACATTTTTGTTATTGACACCAGACCTGCAAAGACACATCAAATTTTTGGGTTCACCGgtgatatgtgggagctgctcatgtgaaccattgtagtgtttaggggtttt Alignment from Exonerate_coding2genome tgactaataggctccatagtaatttccaccattctttctgtgtggcccaggtatgaccaacgagcaatattcctattagttggtgcagaagaaggtaacatttttgttattgacaccagacctgcaaagacacatcaaatttttgggttcaccggtgatatgtgggagctgctcatgtgaaccattgtagtgtttaggggtttt Alignment from GeneWise GTATGACCAGCGAGGAATCTTTCTGTTAGTTGGTACAGAGGAAGGAAACATCTTTGTCATCGATGCCAGACCCTCAAAGTCATTTCAAATTTTTGGATTCACTG tgactaataggctccatagtaatttccaccattctttctgtgtggcccagGTATGACCAACGAGCAATATTCCTATTAGTTGGTGCAGAAGAAGGTAACATTTTTGTTATTGACACCAGACCTGCAAAGACACATCAAATTTTTGGGTTCACCGgtgatatgtgggagctgctcatgtgaaccattgtagtgtttaggggtttt #### Wdr96_ID10362_9 --> 0 - 0 Original Alignment GGGTCTGTTTATATCTATACGTTTGGTGCAGAGATG---CCTCTTGATAAACTCCTCGATGCCTGCGATGGGAAA---GTGCAGGCTGTCAGCTTTATCACACCTGGAACCAAATACTTCCTG agttcttaattctcaatccaccaccttcatcagtcttcctttaaccttagGGGTCAATTTATATCTACACTTTTGGTACTGAAATGCCTCCGCTAGATAAGCTTCTTGATGCATGTGATGGGAAAGTAGTGCAGCCAGTCAGTTTCATCACACCTGGAGCCAGATATTTCCTTgtgagcataataaaccaaaaatgagaatgcctgcaattccggcacatagc Alignment from CESAR GGGTCTGTTTATATCTATACGTTTGGTGCAGAGATGCCT---CTTGATAAACTCCTCGATGCCTGCGATGGGAAA---GTGCAGGCTGTCAGCTTTATCACACCTGGAACCAAATACTTCCTG agttcttaattctcaatccaccaccttcatcagtcttcctttaaccttagGGGTCAATTTATATCTACACTTTTGGTACTGAAATGCCTCCGCTAGATAAGCTTCTTGATGCATGTGATGGGAAAGTAGTGCAGCCAGTCAGTTTCATCACACCTGGAGCCAGATATTTCCTTgtgagcataataaaccaaaaatgagaatgcctgcaattccggcacatagc Alignment from Spaln_aa2Genome GGGTCTGTTTATATCTATACGTTTGGTGCAGAGATG---CCTCTTGATAAACTCCTCGATGCCTGCGATGGGAAA---GTGCAGGCTGTCAGCTTTATCACACCTGGAACCAAATACTTCCTG agttcttaattctcaatccaccaccttcatcagtcttcctttaaccttagGGGTCAATTTATATCTACACTTTTGGTACTGAAATGCCTCCGCTAGATAAGCTTCTTGATGCATGTGATGGGAAAGTAGTGCAGCCAGTCAGTTTCATCACACCTGGAGCCAGATATTTCCTTgtgagcataataaaccaaaaatgagaatgcctgcaattccggcacatagc Alignment from Spaln_nt2Genome GGGTCTGTTTATATCTATACGTTTGGTGCAGAGATGCCTC---TTGATAAACTCCTCGATGCCTGCGATGGGAAAGT---GCAGGCTGTCAGCTTTATCACACCTGGAACCAAATACTTCCTG agttcttaattctcaatccaccaccttcatcagtcttcctttaaccttagGGGTCAATTTATATCTACACTTTTGGTACTGAAATGCCTCCGCTAGATAAGCTTCTTGATGCATGTGATGGGAAAGTAGTGCAGCCAGTCAGTTTCATCACACCTGGAGCCAGATATTTCCTTgtgagcataataaaccaaaaatgagaatgcctgcaattccggcacatagc Alignment from Pairagon GGGTCTGTTTATATCTATACGTTTGGTGCAGAGATGCCT---CTTGATAAACTCCTCGATGCCTGCGATGGGAA---AGTGCAGGCTGTCAGCTTTATCACACCTGGAACCAAATACTTCCTG agttcttaattctcaatccaccaccttcatcagtcttcctttaaccttagGGGTCAATTTATATCTACACTTTTGGTACTGAAATGCCTCCGCTAGATAAGCTTCTTGATGCATGTGATGGGAAAGTAGTGCAGCCAGTCAGTTTCATCACACCTGGAGCCAGATATTTCCTTgtgagcataataaaccaaaaatgagaatgcctgcaattccggcacatagc Alignment from Exonerate_protein2genome GGGTCTGTTTATATCTATACGTTTGGTGCAGAGATG---CCTCTTGATAAACTCCTCGATGCCTGCGATGGGAAA---GTGCAGGCTGTCAGCTTTATCACACCTGGAACCAAATACTTCCTG agttcttaattctcaatccaccaccttcatcagtcttcctttaaccttagGGGTCAATTTATATCTACACTTTTGGTACTGAAATGCCTCCGCTAGATAAGCTTCTTGATGCATGTGATGGGAAAGTAGTGCAGCCAGTCAGTTTCATCACACCTGGAGCCAGATATTTCCTTgtgagcataataaaccaaaaatgagaatgcctgcaattccggcacatagc Alignment from Exonerate_coding2genome GGGTCTGTTTATATCTATACGTTTGGTGCAGAGATG---CCTCTTGATAAACTCCTCGATGCCTGCGATGGGAAA---GTGCAGGCTGTCAGCTTTATCACACCTGGAACCAAATACTTCCTG agttcttaattctcaatccaccaccttcatcagtcttcctttaaccttagGGGTCAATTTATATCTACACTTTTGGTACTGAAATGCCTCCGCTAGATAAGCTTCTTGATGCATGTGATGGGAAAGTAGTGCAGCCAGTCAGTTTCATCACACCTGGAGCCAGATATTTCCTTgtgagcataataaaccaaaaatgagaatgcctgcaattccggcacatagc Alignment from GeneWise GGGTCTGTTTATATCTATACGTTTGGTGCAGAGATGCCT---CTTGATAAACTCCTCGATGCCTGCGATGGGAAA---GTGCAGGCTGTCAGCTTTATCACACCTGGAACCAAATACTTCCTG agttcttaattctcaatccaccaccttcatcagtcttcctttaaccttagGGGTCAATTTATATCTACACTTTTGGTACTGAAATGCCTCCGCTAGATAAGCTTCTTGATGCATGTGATGGGAAAGTAGTGCAGCCAGTCAGTTTCATCACACCTGGAGCCAGATATTTCCTTgtgagcataataaaccaaaaatgagaatgcctgcaattccggcacatagc #### Wdr96_ID10364_7 --> 2 - 0 Original Alignment atGGAGCCCCGCTCATCAACCCA---CTCACGCTGGTGTACCAAAAGGACGGCATACTCGCTTCTGGAATT aagctatgcagcatgattattgctaccttctttcccttaccgtgtcccaggcAGGGCCCCACTCATCAACCCACTTATCACACTAATATTCCAGAAGGACAGAACTGTTGCATCAGGAGCAgtgagtgatatccaggatcccttattaatttcattgcaagtaatagaaat Alignment from CESAR atGGAGCCCCGCTCATCAACCCACTC---ACGCTGGTGTACCAAAAGGACGGCATACTCGCTTCTGGAATT aagctatgcagcatgattattgctaccttctttcccttaccgtgtcccaggcAGGGCCCCACTCATCAACCCACTTATCACACTAATATTCCAGAAGGACAGAACTGTTGCATCAGGAGCAgtgagtgatatccaggatcccttattaatttcattgcaagtaatagaaat Alignment from Spaln_aa2Genome ATGGAGCCCCGCTCATCAACCCACTC---ACGCTGGTGTACCAAAAGGACGGCATACTCGCTTCTGGAATT aagctatgcagcatgattattgctaccttctttcccttaccgtgtcccagGCAGGGCCCCACTCATCAACCCACTTATCACACTAATATTCCAGAAGGACAGAACTGTTGCATCAGGAGCAgtgagtgatatccaggatcccttattaatttcattgcaagtaatagaaat Alignment from Spaln_nt2Genome ATGGAGCCCCGCTCATCAACCCACT---CACGCTGGTGTACCAAAAGGACGGCATACTCGCTTCTGGAATT aagctatgcagcatgattattgctaccttctttcccttaccgtgtcccagGCAGGGCCCCACTCATCAACCCACTTATCACACTAATATTCCAGAAGGACAGAACTGTTGCATCAGGAGCAgtgagtgatatccaggatcccttattaatttcattgcaagtaatagaaat Alignment from Pairagon ATGGAGCCCCGCTCATCAACCCACT--------------------------------------------CA aagctatgcagcatgattattgctaccttctttcccttaccgtgtcccagGCAGGGCCCCACTCATCAACCCACTTATCACACTAATATTCCAGAAGGACAGAACTGTTGCATCAGGAGCAgtgagtgatatccaggatcccttattaatttcattgcaagtaatagaaat Alignment from Exonerate_protein2genome ATGGAGCCCCGCTCATCAACCCACTC---ACGCTGGTGTACCAAAAGGACGGCATACTCGCTTCTGGAATT aagctatgcagcatgattattgctaccttctttcccttaccgtgtcccagGCAGGGCCCCACTCATCAACCCACTTATCACACTAATATTCCAGAAGGACAGAACTGTTGCATCAGGAGCAgtgagtgatatccaggatcccttattaatttcattgcaagtaatagaaat Alignment from Exonerate_coding2genome aagctatgcagcatgattattgctaccttctttcccttaccgtgtcccaggcagggccccactcatcaacccacttatcacactaatattccagaaggacagaactgttgcatcaggagcagtgagtgatatccaggatcccttattaatttcattgcaagtaatagaaat Alignment from GeneWise ATGGAGCCCCGCTCATCAACCCACTC---ACGCTGGTGTACCAAAAGGACGGCATACTCGCTTCTGGAATT aagctatgcagcatgattattgctaccttctttcccttaccgtgtcccagGCAGGGCCCCACTCATCAACCCACTTATCACACTAATATTCCAGAAGGACAGAACTGTTGCATCAGGAGCAgtgagtgatatccaggatcccttattaatttcattgcaagtaatagaaat #### Xpnpep1_ID11140_15 --> 0 - 1 Original Alignment GAATGCTTCACATACGTACTGAAAGGCCACATAGCTGTGAGCGCAGCTGTTTTCCCGACGGGAACCAAAg ttcattacagataccttggccactagtgctgtcctcttcccttcctccagGAATGCTTCACATACGTACTGAAAGGGCGTATTGCTGTGAGTGCAGCTGTGTTCCCAACAGGACCCAAAggtaagtaataatacaataaatctgataccatttgaactgcttatgattat Alignment from CESAR GAATGCTTCACATACGTACTGAAAGGCCACATAGCTGTGAGCGCAGCTGTTTTCCCGACGGGAACCAAAg ttcattacagataccttggccactagtgctgtcctcttcccttcctccagGAATGCTTCACATACGTACTGAAAGGGCGTATTGCTGTGAGTGCAGCTGTGTTCCCAACAGGACCCAAAggtaagtaataatacaataaatctgataccatttgaactgcttatgattat Alignment from Spaln_aa2Genome GAATGCTTCACATACGTACTGAAAGGCCACATAGCTGTGAGCGCAGCTGTTTTCCCGACGGGAACCAAAG ttcattacagataccttggccactagtgctgtcctcttcccttcctccagGAATGCTTCACATACGTACTGAAAGGGCGTATTGCTGTGAGTGCAGCTGTGTTCCCAACAGGACCCAAAGgtaagtaataatacaataaatctgataccatttgaactgcttatgattat Alignment from Spaln_nt2Genome GAATGCTTCACATACGTACTGAAAGGCCACATAGCTGTGAGCGCAGCTGTTTTCCCGACGGGAACCAAAG ttcattacagataccttggccactagtgctgtcctcttcccttcctccagGAATGCTTCACATACGTACTGAAAGGGCGTATTGCTGTGAGTGCAGCTGTGTTCCCAACAGGACCCAAAGgtaagtaataatacaataaatctgataccatttgaactgcttatgattat Alignment from Pairagon GAATGCTTCACATACGTACTGAAAGGCCACATAGCTGTGAGCGCAGCTGTTTTCCCGACGGGAACCAAAG ttcattacagataccttggccactagtgctgtcctcttcccttcctccagGAATGCTTCACATACGTACTGAAAGGGCGTATTGCTGTGAGTGCAGCTGTGTTCCCAACAGGACCCAAAGgtaagtaataatacaataaatctgataccatttgaactgcttatgattat Alignment from Exonerate_protein2genome GAATGCTTCACATACGTACTGAAAGGCCACATAGCTGTGAGCGCAGCTGTTTTCCCGACGGGAACCAAAG ttcattacagataccttggccactagtgctgtcctcttcccttcctccagGAATGCTTCACATACGTACTGAAAGGGCGTATTGCTGTGAGTGCAGCTGTGTTCCCAACAGGACCCAAAGgtaagtaataatacaataaatctgataccatttgaactgcttatgattat Alignment from Exonerate_coding2genome GAATGCTTCACATACGTACTGAAAGGCCACATAGCTGTGAGCGCAGCTGTTTTCCCGACGGGAACCAAAG ttcattacagataccttggccactagtgctgtcctcttcccttcctccagGAATGCTTCACATACGTACTGAAAGGGCGTATTGCTGTGAGTGCAGCTGTGTTCCCAACAGGACCCAAAGgtaagtaataatacaataaatctgataccatttgaactgcttatgattat Alignment from GeneWise GAATGCTTCACATACGTACTGAAAGGCCACATAGCTGTGAGCGCAGCTGTTTTCCCGACGGGAACCAAAG ttcattacagataccttggccactagtgctgtcctcttcccttcctccagGAATGCTTCACATACGTACTGAAAGGGCGTATTGCTGTGAGTGCAGCTGTGTTCCCAACAGGACCCAAAGgtaagtaataatacaataaatctgataccatttgaactgcttatgattat #### Xpnpep1_ID11145_11 --> 0 - 2 Original Alignment GTTCCCAAAGGTGGCGTTACGGAGATCTCTGCGGCTGACAAGGCCGAGGAATTTCGAag tatgccatgatttgaatgaaccacccaccttcaaatgcttgtgtgtttagGTTCCTAAAGGTGGTGTAACTGAGATCTCAGCGGCTGACAAATCTGAGGAATTACGAaggtaggtctcagctctgtgttatgagtcaggcttgtacaggttccatgggt Alignment from CESAR GTTCCCAAAGGTGGCGTTACGGAGATCTCTGCGGCTGACAAGGCCGAGGAATTTCGAag tatgccatgatttgaatgaaccacccaccttcaaatgcttgtgtgtttagGTTCCTAAAGGTGGTGTAACTGAGATCTCAGCGGCTGACAAATCTGAGGAATTACGAaggtaggtctcagctctgtgttatgagtcaggcttgtacaggttccatgggt Alignment from Spaln_aa2Genome GTTCCCAAAGGTGGCGTTACGGAGATCTCTGCGGCTGACAAGGCCGAGGAATTTCGAAG tatgccatgatttgaatgaaccacccaccttcaaatgcttgtgtgtttagGTTCCTAAAGGTGGTGTAACTGAGATCTCAGCGGCTGACAAATCTGAGGAATTACGAAGgtaggtctcagctctgtgttatgagtcaggcttgtacaggttccatgggt Alignment from Spaln_nt2Genome GTTCCCAAAGGTGGCGTTACGGAGATCTCTGCGGCTGACAAGGCCGAGGAATTTCGAAG tatgccatgatttgaatgaaccacccaccttcaaatgcttgtgtgtttagGTTCCTAAAGGTGGTGTAACTGAGATCTCAGCGGCTGACAAATCTGAGGAATTACGAAGgtaggtctcagctctgtgttatgagtcaggcttgtacaggttccatgggt Alignment from Pairagon GTTCCCAAAGGTGGCGTTACGGAGATCTCTGCGGCTGACAAGGCCGAGGAATTTCGAAG tatgccatgatttgaatgaaccacccaccttcaaatgcttgtgtgtttagGTTCCTAAAGGTGGTGTAACTGAGATCTCAGCGGCTGACAAATCTGAGGAATTACGAAGgtaggtctcagctctgtgttatgagtcaggcttgtacaggttccatgggt Alignment from Exonerate_protein2genome GTTCCCAAAGGTGGCGTTACGGAGATCTCTGCGGCTGACAAGGCCGAGGAATTTCGAAG tatgccatgatttgaatgaaccacccaccttcaaatgcttgtgtgtttagGTTCCTAAAGGTGGTGTAACTGAGATCTCAGCGGCTGACAAATCTGAGGAATTACGAAGgtaggtctcagctctgtgttatgagtcaggcttgtacaggttccatgggt Alignment from Exonerate_coding2genome tatgccatgatttgaatgaaccacccaccttcaaatgcttgtgtgtttaggttcctaaaggtggtgtaactgagatctcagcggctgacaaatctgaggaattacgaaggtaggtctcagctctgtgttatgagtcaggcttgtacaggttccatgggt Alignment from GeneWise GTTCCCAAAGGTGGCGTTACGGAGATCTCTGCGGCTGACAAGGCCGAGGAATTTCGAAG tatgccatgatttgaatgaaccacccaccttcaaatgcttgtgtgtttagGTTCCTAAAGGTGGTGTAACTGAGATCTCAGCGGCTGACAAATCTGAGGAATTACGAAGgtaggtctcagctctgtgttatgagtcaggcttgtacaggttccatgggt #### Xpnpep1_ID11147_9 --> 0 - 0 Original Alignment GATCACCGCTGCTGTATGCCTTACACACCCATCTGCATTGCCAAAGCCGTGAAGAACTCCGCTGAGTCGGACGGCATGAGGCGGGCTCAC atcccttcctctaatatcactgcacagtttaaccttacccatgtcttcagGAGCATCGCCGCTGTATGCCTTATGCTTCCATCTGCATTACAAAAGCTGTGAAGAATTTCACTGAGTCAGATGGTATGAGG---CCTCATgtaaggagtgggctgataatttatgcagttatgcccacatgatgagattt Alignment from CESAR GATCACCGCTGCTGTATGCCTTACACACCCATCTGCATTGCCAAAGCCGTGAAGAACTCCGCTGAGTCGGACGGCATGAGGCGGGCTCAC atcccttcctctaatatcactgcacagtttaaccttacccatgtcttcagGAGCATCGCCGCTGTATGCCTTATGCTTCCATCTGCATTACAAAAGCTGTGAAGAATTTCACTGAGTCAGATGGTATGAGG---CCTCATgtaaggagtgggctgataatttatgcagttatgcccacatgatgagattt Alignment from Spaln_aa2Genome GATCACCGCTGCTGTATGCCTTACACACCCATCTGCATTGCCAAAGCCGTGAAGAACTCCGCTGAGTCGGACGGCATGAGGCGGGCTCAC atcccttcctctaatatcactgcacagtttaaccttacccatgtcttcagGAGCATCGCCGCTGTATGCCTTATGCTTCCATCTGCATTACAAAAGCTGTGAAGAATTTCACTGAGTCAGATGGTATG---AGGCCTCATgtaaggagtgggctgataatttatgcagttatgcccacatgatgagattt Alignment from Spaln_nt2Genome GATCACCGCTGCTGTATGCCTTACACACCCATCTGCATTGCCAAAGCCGTGAAGAACTCCGCTGAGTCGGACGGCATGAGGCGGGCTCAC atcccttcctctaatatcactgcacagtttaaccttacccatgtcttcagGAGCATCGCCGCTGTATGCCTTATGCTTCCATCTGCATTACAAAAGCTGTGAAGAATTTCACTGAGTCAGATGGTATGAGGC---CTCATgtaaggagtgggctgataatttatgcagttatgcccacatgatgagattt Alignment from Pairagon GATCACCGCTGCTGTATGCCTTACACACCCATCTGCATTGCCAAAGCCGTGAAGAACTCCGCTGAGTCGGACGGCATGAGGCGGGCTCAC atcccttcctctaatatcactgcacagtttaaccttacccatgtcttcagGAGCATCGCCGCTGTATGCCTTATGCTTCCATCTGCATTACAAAAGCTGTGAAGAATTTCACTGAGTCAGATGGTATGAGGC---CTCATgtaaggagtgggctgataatttatgcagttatgcccacatgatgagattt Alignment from Exonerate_protein2genome GATCACCGCTGCTGTATGCCTTACACACCCATCTGCATTGCCAAAGCCGTGAAGAACTCCGCTGAGTCGGACGGCATGAGGCGGGCTCAC atcccttcctctaatatcactgcacagtttaaccttacccatgtcttcagGAGCATCGCCGCTGTATGCCTTATGCTTCCATCTGCATTACAAAAGCTGTGAAGAATTTCACTGAGTCAGATGGTATG---AGGCCTCATgtaaggagtgggctgataatttatgcagttatgcccacatgatgagattt Alignment from Exonerate_coding2genome GATCACCGCTGCTGTATGCCTTACACACCCATCTGCATTGCCAAAGCCGTGAAGAACTCCGCTGAGTCGGACGGCATGAGGCGGGCTCAC atcccttcctctaatatcactgcacagtttaaccttacccatgtcttcagGAGCATCGCCGCTGTATGCCTTATGCTTCCATCTGCATTACAAAAGCTGTGAAGAATTTCACTGAGTCAGATGGTATG---AGGCCTCATgtaaggagtgggctgataatttatgcagttatgcccacatgatgagattt Alignment from GeneWise GATCACCGCTGCTGTATGCCTTACACACCCATCTGCATTGCCAAAGCCGTGAAGAACTCCGCTGAGTCGGACGGCATGAGGCGGGCTCAC atcccttcctctaatatcactgcacagtttaaccttacccatgtcttcagGAGCATCGCCGCTGTATGCCTTATGCTTCCATCTGCATTACAAAAGCTGTGAAGAATTTCACTGAGTCAGATGGTATGAGG---CCTCATgtaaggagtgggctgataatttatgcagttatgcccacatgatgagattt #### Xpnpep1_ID11148_8 --> 1 - 0 Original Alignment gCTCTTCATTGACGGGGACCGCGTCGACGCGCCGGGCGTGAAGCAGCACCTGCTGCTTGACTTGGGCCTGGAGGCGGAATACAGAATCCAGGTCCTGCCATACAAGTCCATCCTGAGTGAGCTCAAGGCCCTGTGTGCTGACCTGTCCCCGAGGGAGAAAGTGTGGGTCAGTGACAAGGCCAGCTACGCTGTGAGCGAGGCCATCCCCAAG acacatcactgcttgtgtgcccccccttgtcccatgtggttgtgtttcaggCTATTCATTGATGGGGGACATGGT---GCACCTGGTGTGAAGCAGCATCTACTAGTTGACTTGGGCTTGGAGGGAGAATACAGAATACAGGTCCTGCCATACAAGGCCATACTCAGTGAGCTT------------GTTGACTCCTCCCCCAGAGAGAAAGTGTGGGTCAGTGGAAAATCCACCTATGCTGTGAGTGAAGCCATTCCTAAGgtcagtagggctatcaagggatggttcatggggcatcaaaaaacacagag Alignment from CESAR gCTCTTCATTGACGGGGACCGCGTCGACGCGCCGGGCGTGAAGCAGCACCTGCTGCTTGACTTGGGCCTGGAGGCGGAATACAGAATCCAGGTCCTGCCATACAAGTCCATCCTGAGTGAGCTCAAGGCCCTGTGTGCTGACCTGTCCCCGAGGGAGAAAGTGTGGGTCAGTGACAAGGCCAGCTACGCTGTGAGCGAGGCCATCCCCAAG acacatcactgcttgtgtgcccccccttgtcccatgtggttgtgtttcaggCTATTCATTGATGGGGGACAT---GGTGCACCTGGTGTGAAGCAGCATCTACTAGTTGACTTGGGCTTGGAGGGAGAATACAGAATACAGGTCCTGCCATACAAGGCCATACTCAGTGAGCTT------------GTTGACTCCTCCCCCAGAGAGAAAGTGTGGGTCAGTGGAAAATCCACCTATGCTGTGAGTGAAGCCATTCCTAAGgtcagtagggctatcaagggatggttcatggggcatcaaaaaacacagag Alignment from Spaln_aa2Genome GCTCTTCATTGACGGGGACCGCGTCGACGCGCCGGGCGTGAAGCAGCACCTGCTGCTTGACTTGGGCCTGGAGGCGGAATACAGAATCCAGGTCCTGCCATACAAGTCCATCCTGAGTGAGCTCAAGGCCCTGTGTGCTGACCTGTCCCCGAGGGAGAAAGTGTGGGTCAGTGACAAGGCCAGCTACGCTGTGAGCGAGGCCATCCCCAAG acacatcactgcttgtgtgcccccccttgtcccatgtggttgtgtttcagGCTATTCATTGATGGGGGACAT---GGTGCACCTGGTGTGAAGCAGCATCTACTAGTTGACTTGGGCTTGGAGGGAGAATACAGAATACAGGTCCTGCCATACAAGGCCATACTCAGTGAGCTT------------GTTGACTCCTCCCCCAGAGAGAAAGTGTGGGTCAGTGGAAAATCCACCTATGCTGTGAGTGAAGCCATTCCTAAGgtcagtagggctatcaagggatggttcatggggcatcaaaaaacacagag Alignment from Spaln_nt2Genome GCTCTTCATTGACGGGGACCGCGTCGACGCGCCGGGCGTGAAGCAGCACCTGCTGCTTGACTTGGGCCTGGAGGCGGAATACAGAATCCAGGTCCTGCCATACAAGTCCATCCTGAGTGAGCTCAAGGCCCTGTGTGCTGACCTGTCCCCGAGGGAGAAAGTGTGGGTCAGTGACAAGGCCAGCTACGCTGTGAGCGAGGCCATCCCCAAG acacatcactgcttgtgtgcccccccttgtcccatgtggttgtgtttcagGCTATTCATTGATGGGG---GACATGGTGCACCTGGTGTGAAGCAGCATCTACTAGTTGACTTGGGCTTGGAGGGAGAATACAGAATACAGGTCCTGCCATACAAGGCCATACTCAGTGAGCT------------TGTTGACTCCTCCCCCAGAGAGAAAGTGTGGGTCAGTGGAAAATCCACCTATGCTGTGAGTGAAGCCATTCCTAAGgtcagtagggctatcaagggatggttcatggggcatcaaaaaacacagag Alignment from Pairagon GCTCTTCATTGACGGGGACCGCGTCGAC-----GCGCCGGGCGTGAAGCAGCACCTGCTGCTTGACTTGGGCCTGGAGGCGGAATACAGAATCCAGGTCCTGCCATACAAGTCCATCCTGAGTGAGCTCAAGGCCCTGTGTGCTGACCTGTCCCCGAGGGAGAAAGTGTGGGTCAGTGACAAGGCCAGCTACGCTGTGAGCGAGGCCATCCCCAAG acacatcactgcttgtgtgcccccccttgtcccatgtggttgtgtttcagGCTATTCATTGATGGGG--------GACATGGTGCACCTGGTGTGAAGCAGCATCTACTAGTTGACTTGGGCTTGGAGGGAGAATACAGAATACAGGTCCTGCCATACAAGGCCATACTCAGTGAGCT------------TGTTGACTCCTCCCCCAGAGAGAAAGTGTGGGTCAGTGGAAAATCCACCTATGCTGTGAGTGAAGCCATTCCTAAGgtcagtagggctatcaagggatggttcatggggcatcaaaaaacacagag Alignment from Exonerate_protein2genome GCTCTTCATTGACGGGGACCGCGTCGACGCGCCGGGCGTGAAGCAGCACCTGCTGCTTGACTTGGGCCTGGAGGCGGAATACAGAATCCAGGTCCTGCCATACAAGTCCATCCTGAGTGAGCTCAAGGCCCTGTGTGCTGACCTGTCCCCGAGGGAGAAAGTGTGGGTCAGTGACAAGGCCAGCTACGCTGTGAGCGAGGCCATCCCCAAG acacatcactgcttgtgtgcccccccttgtcccatgtggttgtgtttcagGCTATTCATTGATGGGGGACAT---GGTGCACCTGGTGTGAAGCAGCATCTACTAGTTGACTTGGGCTTGGAGGGAGAATACAGAATACAGGTCCTGCCATACAAGGCCATACTCAGTGAGCTT------------GTTGACTCCTCCCCCAGAGAGAAAGTGTGGGTCAGTGGAAAATCCACCTATGCTGTGAGTGAAGCCATTCCTAAGgtcagtagggctatcaagggatggttcatggggcatcaaaaaacacagag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCTCTTCATTGACGGGGACCGCGTCGACGCGCCGGGCGTGAAGCAGCACCTGCTGCTTGACTTGGGCCTGGAGGCGGAATACAGAATCCAGGTCCTGCCATACAAGTCCATCCTGAGTGAGCTCAAGGCCCTGTGTGCTGACCTGTCCCCGAGGGAGAAAGTGTGGGTCAGTGACAAGGCCAGCTACGCTGTGAGCGAGGCCATCCCCAAG acacatcactgcttgtgtgcccccccttgtcccatgtggttgtgtttcagGCTATTCATTGATGGGGGACAT---GGTGCACCTGGTGTGAAGCAGCATCTACTAGTTGACTTGGGCTTGGAGGGAGAATACAGAATACAGGTCCTGCCATACAAGGCCATACTCAGTGAGCTT------------GTTGACTCCTCCCCCAGAGAGAAAGTGTGGGTCAGTGGAAAATCCACCTATGCTGTGAGTGAAGCCATTCCTAAGgtcagtagggctatcaagggatggttcatggggcatcaaaaaacacagag #### Xpnpep1_ID11149_7 --> 2 - 2 Original Alignment ggCTGTTCAATCTCCGCGGGTCAGATGTGGAACACAATCCTGTGTTTTTCTCCTATGCGATCGTAGGCCTAGAGACGATCat aattggtatctgcttggggtcaattttttctcctcgccttcctgttccagggCTGTTCAACCTCCGTGGATCAGATGTGGAACACAATCCTGTGTTTTTTTCCTATGCAATTGTAGGTCTGGAGACAATCatgtgagaactcactctaatcccaggggaccccctgcctgattattcctttc Alignment from CESAR ggCTGTTCAATCTCCGCGGGTCAGATGTGGAACACAATCCTGTGTTTTTCTCCTATGCGATCGTAGGCCTAGAGACGATCat aattggtatctgcttggggtcaattttttctcctcgccttcctgttccagggCTGTTCAACCTCCGTGGATCAGATGTGGAACACAATCCTGTGTTTTTTTCCTATGCAATTGTAGGTCTGGAGACAATCatgtgagaactcactctaatcccaggggaccccctgcctgattattcctttc Alignment from Spaln_aa2Genome GGCTGTTCAATCTCCGCGGGTCAGATGTGGAACACAATCCTGTGTTTTTCTCCTATGCGATCGTAGGCCTAGAGACGATCAT aattggtatctgcttggggtcaattttttctcctcgccttcctgttccagGGCTGTTCAACCTCCGTGGATCAGATGTGGAACACAATCCTGTGTTTTTTTCCTATGCAATTGTAGGTCTGGAGACAATCATgtgagaactcactctaatcccaggggaccccctgcctgattattcctttc Alignment from Spaln_nt2Genome GGCTGTTCAATCTCCGCGGGTCAGATGTGGAACACAATCCTGTGTTTTTCTCCTATGCGATCGTAGGCCTAGAGACGATCAT aattggtatctgcttggggtcaattttttctcctcgccttcctgttccagGGCTGTTCAACCTCCGTGGATCAGATGTGGAACACAATCCTGTGTTTTTTTCCTATGCAATTGTAGGTCTGGAGACAATCATgtgagaactcactctaatcccaggggaccccctgcctgattattcctttc Alignment from Pairagon GGCTGTTCAATCTCCGCGGGTCAGATGTGGAACACAATCCTGTGTTTTTCTCCTATGCGATCGTAGGCCTAGAGACGATCAT aattggtatctgcttggggtcaattttttctcctcgccttcctgttccagGGCTGTTCAACCTCCGTGGATCAGATGTGGAACACAATCCTGTGTTTTTTTCCTATGCAATTGTAGGTCTGGAGACAATCATgtgagaactcactctaatcccaggggaccccctgcctgattattcctttc Alignment from Exonerate_protein2genome GGCTGTTCAATCTCCGCGGGTCAGATGTGGAACACAATCCTGTGTTTTTCTCCTATGCGATCGTAGGCCTAGAGACGATCAT aattggtatctgcttggggtcaattttttctcctcgccttcctgttccagGGCTGTTCAACCTCCGTGGATCAGATGTGGAACACAATCCTGTGTTTTTTTCCTATGCAATTGTAGGTCTGGAGACAATCATgtgagaactcactctaatcccaggggaccccctgcctgattattcctttc Alignment from Exonerate_coding2genome GGCTGTTCAATCTCCGCGGGTCAGATGTGGAACACAATCCTGTGTTTTTCTCCTATGCGATCGTAGGCCTAGAGACGATCAT aattggtatctgcttggggtcaattttttctcctcgccttcctgttccagGGCTGTTCAACCTCCGTGGATCAGATGTGGAACACAATCCTGTGTTTTTTTCCTATGCAATTGTAGGTCTGGAGACAATCATgtgagaactcactctaatcccaggggaccccctgcctgattattcctttc Alignment from GeneWise GGCTGTTCAATCTCCGCGGGTCAGATGTGGAACACAATCCTGTGTTTTTCTCCTATGCGATCGTAGGCCTAGAGACGATCAT aattggtatctgcttggggtcaattttttctcctcgccttcctgttccagGGCTGTTCAACCTCCGTGGATCAGATGTGGAACACAATCCTGTGTTTTTTTCCTATGCAATTGTAGGTCTGGAGACAATCATgtgagaactcactctaatcccaggggaccccctgcctgattattcctttc #### Xpnpep1_ID11155_2 --> 0 - 1 Original Alignment AGCGAGTACATTGCACCCTGTGACTGTCGGAGGGCGTTTGTCTCTGGATTCGATGGCTCTGCAg caaatgtaggtttgcttgggtgatgcatcttactctctcttgtcttgcagAGTGAGTATATAGTGCCTTGCGATTGTCAAAGAGCATTTGTATCTGGCTTTGATGGTTCAGCAggtatctaattaactccgttttgcaacttcaatatgctacactttgaggca Alignment from CESAR AGCGAGTACATTGCACCCTGTGACTGTCGGAGGGCGTTTGTCTCTGGATTCGATGGCTCTGCAg caaatgtaggtttgcttgggtgatgcatcttactctctcttgtcttgcagAGTGAGTATATAGTGCCTTGCGATTGTCAAAGAGCATTTGTATCTGGCTTTGATGGTTCAGCAggtatctaattaactccgttttgcaacttcaatatgctacactttgaggca Alignment from Spaln_aa2Genome AGCGAGTACATTGCACCCTGTGACTGTCGGAGGGCGTTTGTCTCTGGATTCGATGGCTCTGCAG caaatgtaggtttgcttgggtgatgcatcttactctctcttgtcttgcagAGTGAGTATATAGTGCCTTGCGATTGTCAAAGAGCATTTGTATCTGGCTTTGATGGTTCAGCAGgtatctaattaactccgttttgcaacttcaatatgctacactttgaggca Alignment from Spaln_nt2Genome AGCGAGTACATTGCACCCTGTGACTGTCGGAGGGCGTTTGTCTCTGGATTCGATGGCTCTGCAG caaatgtaggtttgcttgggtgatgcatcttactctctcttgtcttgcagAGTGAGTATATAGTGCCTTGCGATTGTCAAAGAGCATTTGTATCTGGCTTTGATGGTTCAGCAGgtatctaattaactccgttttgcaacttcaatatgctacactttgaggca Alignment from Pairagon AGCGAGTACATTGCACCCTGTGACTGTCGGAGGGCGTTTGTCTCTGGATTCGATGGCTCTGCAG caaatgtaggtttgcttgggtgatgcatcttactctctcttgtcttgcagAGTGAGTATATAGTGCCTTGCGATTGTCAAAGAGCATTTGTATCTGGCTTTGATGGTTCAGCAGgtatctaattaactccgttttgcaacttcaatatgctacactttgaggca Alignment from Exonerate_protein2genome AGCGAGTACATTGCACCCTGTGACTGTCGGAGGGCGTTTGTCTCTGGATTCGATGGCTCTGCAG caaatgtaggtttgcttgggtgatgcatcttactctctcttgtcttgcagAGTGAGTATATAGTGCCTTGCGATTGTCAAAGAGCATTTGTATCTGGCTTTGATGGTTCAGCAGgtatctaattaactccgttttgcaacttcaatatgctacactttgaggca Alignment from Exonerate_coding2genome caaatgtaggtttgcttgggtgatgcatcttactctctcttgtcttgcagagtgagtatatagtgccttgcgattgtcaaagagcatttgtatctggctttgatggttcagcaggtatctaattaactccgttttgcaacttcaatatgctacactttgaggca Alignment from GeneWise AGCGAGTACATTGCACCCTGTGACTGTCGGAGGGCGTTTGTCTCTGGATTCGATGGCTCTGCAG caaatgtaggtttgcttgggtgatgcatcttactctctcttgtcttgcagAGTGAGTATATAGTGCCTTGCGATTGTCAAAGAGCATTTGTATCTGGCTTTGATGGTTCAGCAGgtatctaattaactccgttttgcaacttcaatatgctacactttgaggca #### Yif1a_ID834_6 --> 1 - 2 Original Alignment gTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGgg atagaaatcaacccatcttgggcctaaaaattttctctttgtctatcaaggTTTTCCCCAGAGGTGTTGGGACTATGTGCACGCACAGCACTGGTATGGGTCTTCATGGAGGTACTAGCTCTGCTCCTAGGGCTTTATTTAGCCACTGTGCACAGCAAACTTAGTACCTTCCACCTCCTGGCCTACAGCACCTACAGACATGTGgggtaaggatgggtcaagaggcatctgcagagctctaagatagggtatatgc Alignment from CESAR gTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGgg atagaaatcaacccatcttgggcctaaaaattttctctttgtctatcaaggTTTTCCCCAGAGGTGTTGGGACTATGTGCACGCACAGCACTGGTATGGGTCTTCATGGAGGTACTAGCTCTGCTCCTAGGGCTTTATTTAGCCACTGTGCACAGCAAACTTAGTACCTTCCACCTCCTGGCCTACAGCACCTACAGACATGTGgggtaaggatgggtcaagaggcatctgcagagctctaagatagggtatatgc Alignment from Spaln_aa2Genome GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG atagaaatcaacccatcttgggcctaaaaattttctctttgtctatcaagGTTTTCCCCAGAGGTGTTGGGACTATGTGCACGCACAGCACTGGTATGGGTCTTCATGGAGGTACTAGCTCTGCTCCTAGGGCTTTATTTAGCCACTGTGCACAGCAAACTTAGTACCTTCCACCTCCTGGCCTACAGCACCTACAGACATGTGGGgtaaggatgggtcaagaggcatctgcagagctctaagatagggtatatgc Alignment from Spaln_nt2Genome GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG atagaaatcaacccatcttgggcctaaaaattttctctttgtctatcaagGTTTTCCCCAGAGGTGTTGGGACTATGTGCACGCACAGCACTGGTATGGGTCTTCATGGAGGTACTAGCTCTGCTCCTAGGGCTTTATTTAGCCACTGTGCACAGCAAACTTAGTACCTTCCACCTCCTGGCCTACAGCACCTACAGACATGTGGGgtaaggatgggtcaagaggcatctgcagagctctaagatagggtatatgc Alignment from Pairagon GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG atagaaatcaacccatcttgggcctaaaaattttctctttgtctatcaagGTTTTCCCCAGAGGTGTTGGGACTATGTGCACGCACAGCACTGGTATGGGTCTTCATGGAGGTACTAGCTCTGCTCCTAGGGCTTTATTTAGCCACTGTGCACAGCAAACTTAGTACCTTCCACCTCCTGGCCTACAGCACCTACAGACATGTGGGgtaaggatgggtcaagaggcatctgcagagctctaagatagggtatatgc Alignment from Exonerate_protein2genome GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG atagaaatcaacccatcttgggcctaaaaattttctctttgtctatcaagGTTTTCCCCAGAGGTGTTGGGACTATGTGCACGCACAGCACTGGTATGGGTCTTCATGGAGGTACTAGCTCTGCTCCTAGGGCTTTATTTAGCCACTGTGCACAGCAAACTTAGTACCTTCCACCTCCTGGCCTACAGCACCTACAGACATGTGGGgtaaggatgggtcaagaggcatctgcagagctctaagatagggtatatgc Alignment from Exonerate_coding2genome GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG atagaaatcaacccatcttgggcctaaaaattttctctttgtctatcaagGTTTTCCCCAGAGGTGTTGGGACTATGTGCACGCACAGCACTGGTATGGGTCTTCATGGAGGTACTAGCTCTGCTCCTAGGGCTTTATTTAGCCACTGTGCACAGCAAACTTAGTACCTTCCACCTCCTGGCCTACAGCACCTACAGACATGTGGGgtaaggatgggtcaagaggcatctgcagagctctaagatagggtatatgc Alignment from GeneWise GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG atagaaatcaacccatcttgggcctaaaaattttctctttgtctatcaagGTTTTCCCCAGAGGTGTTGGGACTATGTGCACGCACAGCACTGGTATGGGTCTTCATGGAGGTACTAGCTCTGCTCCTAGGGCTTTATTTAGCCACTGTGCACAGCAAACTTAGTACCTTCCACCTCCTGGCCTACAGCACCTACAGACATGTGGGgtaaggatgggtcaagaggcatctgcagagctctaagatagggtatatgc #### Zdhhc24_ID713_2 --> 1 - 1 Original Alignment tTACTGTTACCAGTGCCAAAGCCAGGTGCCACCTCGTAGTGGTCACTGCTCTGCCTGCCGTGTGTGCATCCTACGTCGTGACCATCACTGTCGCCTATTGGGCTGCTGTGTGGGCTTCCATAATTACCGGCCCTTCCTGTGTCTCCTGCTTCACTCTGCTGGTGTCCTGCTCCACATCTCAGTGCTGCTAGGCCCCGCCCTGTCAGCCTTGCTGCAGGCCCACTCAGCCCTCTACACAGTGGCTCTCCTGCTGTTGCCCTGGCTCATGCTACTCACAg cgcgcaataggtgtcctcatgatgtatgatcttgtctcttttctctgtagtGACTGTTACCAGTGCCAAAGCCAAGTGCCACCTCGGAGTGGTCACTGCTCTGCCTGCCGTGTGTGCATCCTACGTCGTGACCACCACTGTCACCTATTGAGTTGTTCTGTGGGGTTCCATAATTACCGTCCCTTCCTCTGTCTGCTGCTTCACTCTGCTGGTGTTCTGCTCCATATCTCAGTGCTGCTAGGCCCCGCCCTATCAGCCTTGCTGCAGGCCCACTTAGCCCTTTATACAGTGGCTCTCCTGTTGTTGCCCTGGCTCATGCTACTCACAggtaagtgtcctaccctatgggagacccttgcttgcattgggccagcagct Alignment from CESAR tTACTGTTACCAGTGCCAAAGCCAGGTGCCACCTCGTAGTGGTCACTGCTCTGCCTGCCGTGTGTGCATCCTACGTCGTGACCATCACTGTCGCCTATTGGGCTGCTGTGTGGGCTTCCATAATTACCGGCCCTTCCTGTGTCTCCTGCTTCACTCTGCTGGTGTCCTGCTCCACATCTCAGTGCTGCTAGGCCCCGCCCTGTCAGCCTTGCTGCAGGCCCACTCAGCCCTCTACACAGTGGCTCTCCTGCTGTTGCCCTGGCTCATGCTACTCACAg cgcgcaataggtgtcctcatgatgtatgatcttgtctcttttctctgtagtGACTGTTACCAGTGCCAAAGCCAAGTGCCACCTCGGAGTGGTCACTGCTCTGCCTGCCGTGTGTGCATCCTACGTCGTGACCACCACTGTCACCTATTGAGTTGTTCTGTGGGGTTCCATAATTACCGTCCCTTCCTCTGTCTGCTGCTTCACTCTGCTGGTGTTCTGCTCCATATCTCAGTGCTGCTAGGCCCCGCCCTATCAGCCTTGCTGCAGGCCCACTTAGCCCTTTATACAGTGGCTCTCCTGTTGTTGCCCTGGCTCATGCTACTCACAggtaagtgtcctaccctatgggagacccttgcttgcattgggccagcagct Alignment from Spaln_aa2Genome TTACTGTTACCAGTGCCAAAGCCAGGTGCCACCTCGTAGTGGTCACTGCTCTGCCTGCCGTGTGTGCATCCTACGTCGTGACCATCACTGTCGCCTATTGGGCTGCTGTGTGGGCTTCCATAATTACCGGCCCTTCCTGTGTCTCCTGCTTCACTCTGCTGGTGTCCTGCTCCACATCTCAGTGCTGCTAGGCCCCGCCCTGTCAGCCTTGCTGCAGGCCCACTCAGCCCTCTACACAGTGGCTCTCCTGCTGTTGCCCTGGCTCATGCTACTCACAG cgcgcaataggtgtcctcatgatgtatgatcttgtctcttttctctgtagTGACTGTTACCAGTGCCAAAGCCAAGTGCCACCTCGGAGTGGTCACTGCTCTGCCTGCCGTGTGTGCATCCTACGTCGTGACCACCACTGTCACCTATTGAGTTGTTCTGTGGGGTTCCATAATTACCGTCCCTTCCTCTGTCTGCTGCTTCACTCTGCTGGTGTTCTGCTCCATATCTCAGTGCTGCTAGGCCCCGCCCTATCAGCCTTGCTGCAGGCCCACTTAGCCCTTTATACAGTGGCTCTCCTGTTGTTGCCCTGGCTCATGCTACTCACAGgtaagtgtcctaccctatgggagacccttgcttgcattgggccagcagct Alignment from Spaln_nt2Genome TTACTGTTACCAGTGCCAAAGCCAGGTGCCACCTCGTAGTGGTCACTGCTCTGCCTGCCGTGTGTGCATCCTACGTCGTGACCATCACTGTCGCCTATTGGGCTGCTGTGTGGGCTTCCATAATTACCGGCCCTTCCTGTGTCTCCTGCTTCACTCTGCTGGTGTCCTGCTCCACATCTCAGTGCTGCTAGGCCCCGCCCTGTCAGCCTTGCTGCAGGCCCACTCAGCCCTCTACACAGTGGCTCTCCTGCTGTTGCCCTGGCTCATGCTACTCACAG cgcgcaataggtgtcctcatgatgtatgatcttgtctcttttctctgtagTGACTGTTACCAGTGCCAAAGCCAAGTGCCACCTCGGAGTGGTCACTGCTCTGCCTGCCGTGTGTGCATCCTACGTCGTGACCACCACTGTCACCTATTGAGTTGTTCTGTGGGGTTCCATAATTACCGTCCCTTCCTCTGTCTGCTGCTTCACTCTGCTGGTGTTCTGCTCCATATCTCAGTGCTGCTAGGCCCCGCCCTATCAGCCTTGCTGCAGGCCCACTTAGCCCTTTATACAGTGGCTCTCCTGTTGTTGCCCTGGCTCATGCTACTCACAGgtaagtgtcctaccctatgggagacccttgcttgcattgggccagcagct Alignment from Pairagon TTACTGTTACCAGTGCCAAAGCCAGGTGCCACCTCGTAGTGGTCACTGCTCTGCCTGCCGTGTGTGCATCCTACGTCGTGACCATCACTGTCGCCTATTGGGCTGCTGTGTGGGCTTCCATAATTACCGGCCCTTCCTGTGTCTCCTGCTTCACTCTGCTGGTGTCCTGCTCCACATCTCAGTGCTGCTAGGCCCCGCCCTGTCAGCCTTGCTGCAGGCCCACTCAGCCCTCTACACAGTGGCTCTCCTGCTGTTGCCCTGGCTCATGCTACTCACAG cgcgcaataggtgtcctcatgatgtatgatcttgtctcttttctctgtagTGACTGTTACCAGTGCCAAAGCCAAGTGCCACCTCGGAGTGGTCACTGCTCTGCCTGCCGTGTGTGCATCCTACGTCGTGACCACCACTGTCACCTATTGAGTTGTTCTGTGGGGTTCCATAATTACCGTCCCTTCCTCTGTCTGCTGCTTCACTCTGCTGGTGTTCTGCTCCATATCTCAGTGCTGCTAGGCCCCGCCCTATCAGCCTTGCTGCAGGCCCACTTAGCCCTTTATACAGTGGCTCTCCTGTTGTTGCCCTGGCTCATGCTACTCACAGgtaagtgtcctaccctatgggagacccttgcttgcattgggccagcagct Alignment from Exonerate_protein2genome TTACTGTTACCAGTGCCAAAGCCAGGTGCCACCTCGTAGTGGTCACTGCTCTGCCTGCCGTGTGTGCATCCTACGTCGTGACCATCACTGTCGCCTATTGGGCTGCTGTGTGGGCTTCCATAATTACCGGCCCTTCCTGTGTCTCCTGCTTCACTCTGCTGGTGTCCTGCTCCACATCTCAGTGCTGCTAGGCCCCGCCCTGTCAGCCTTGCTGCAGGCCCACTCAGCCCTCTACACAGTGGCTCTCCTGCTGTTGCCCTGGCTCATGCTACTCACAG cgcgcaataggtgtcctcatgatgtatgatcttgtctcttttctctgtagTGACTGTTACCAGTGCCAAAGCCAAGTGCCACCTCGGAGTGGTCACTGCTCTGCCTGCCGTGTGTGCATCCTACGTCGTGACCACCACTGTCACCTATTGAGTTGTTCTGTGGGGTTCCATAATTACCGTCCCTTCCTCTGTCTGCTGCTTCACTCTGCTGGTGTTCTGCTCCATATCTCAGTGCTGCTAGGCCCCGCCCTATCAGCCTTGCTGCAGGCCCACTTAGCCCTTTATACAGTGGCTCTCCTGTTGTTGCCCTGGCTCATGCTACTCACAGgtaagtgtcctaccctatgggagacccttgcttgcattgggccagcagct Alignment from Exonerate_coding2genome TTACTGTTACCAGTGCCAAAGCCAGGTGCCACCTCGTAGTGGTCACTGCTCTGCCTGCCGTGTGTGCATCCTACGTCGTGACCATCACTGTCGCCTATTGGGCTGCTGTGTGGGCTTCCATAATTACCGGCCCTTCCTGTGTCTCCTGCTTCACTCTGCTGGTGTCCTGCTCCACATCTCAGTGCTGCTAGGCCCCGCCCTGTCAGCCTTGCTGCAGGCCCACTCAGCCCTCTACACAGTGGCTCTCCTGCTGTTGCCCTGGCTCATGCTACTCACAG cgcgcaataggtgtcctcatgatgtatgatcttgtctcttttctctgtagTGACTGTTACCAGTGCCAAAGCCAAGTGCCACCTCGGAGTGGTCACTGCTCTGCCTGCCGTGTGTGCATCCTACGTCGTGACCACCACTGTCACCTATTGAGTTGTTCTGTGGGGTTCCATAATTACCGTCCCTTCCTCTGTCTGCTGCTTCACTCTGCTGGTGTTCTGCTCCATATCTCAGTGCTGCTAGGCCCCGCCCTATCAGCCTTGCTGCAGGCCCACTTAGCCCTTTATACAGTGGCTCTCCTGTTGTTGCCCTGGCTCATGCTACTCACAGgtaagtgtcctaccctatgggagacccttgcttgcattgggccagcagct Alignment from GeneWise TTACTGTTACCAGTGCCAAAGCCAGGTGCCACCTCGTAGTGGTCACTGCTCTGCCTGCCGTGTGTGCATCCTACGTCGTGACCATCACTGTCGCCTATTGGGCTGCTGTGTGGGCTTCCATAATTACCGGCCCTTCCTGTGTCTCCTGCTTCACTCTGCTGGTGTCCTGCTCCACATCTCAGTGCTGCTAGGCCCCGCCCTGTCAGCCTTGCTGCAGGCCCACTCAGCCCTCTACACAGTGGCTCTCCTGCTGTTGCCCTGGCTCATGCTACTCACAGGCAAAG cgcgcaataggtgtcctcatgatgtatgatcttgtctcttttctctgtagTGACTGTTACCAGTGCCAAAGCCAAGTGCCACCTCGGAGTGGTCACTGCTCTGCCTGCCGTGTGTGCATCCTACGTCGTGACCACCACTGTCACCTATTGAGTTGTTCTGTGGGGTTCCATAATTACCGTCCCTTCCTCTGTCTGCTGCTTCACTCTGCTGGTGTTCTGCTCCATATCTCAGTGCTGCTAGGCCCCGCCCTATCAGCCTTGCTGCAGGCCCACTTAGCCCTTTATACAGTGGCTCTCCTGTTGTTGCCCTGGCTCATGCTACTCACAGGTAAGTgtcctaccctatgggagacccttgcttgcattgggccagcagct #### Zdhhc6_ID11621_8 --> 0 - 2 Original Alignment GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGcg ggggtgtcaaaggggcaccacagtgcaggcttctcaattgtcacctctagGTTCACTATAAGTTTATAGAGGACTACAACGGTGCTAGCTGCCCATTGAATATAGGAGTGAGAACCTTCTTTACAAGCCCCTGTACA---GAGCCCCGAGTCCAGCTACAACAAGGTGAATTCATACTAGCAATGAGGGGGTTGaggtaagtggagggggttctttatctagaaactaaaattctctgtccattgg Alignment from CESAR GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGcg ggggtgtcaaaggggcaccacagtgcaggcttctcaattgtcacctctagGTTCACTATAAGTTTATAGAGGACTACAACGGTGCTAGCTGCCCATTGAATATAGGAGTGAGAACCTTCTTTACAAGCCCCTGTACA---GAGCCCCGAGTCCAGCTACAACAAGGTGAATTCATACTAGCAATGAGGGGGTTGaggtaagtggagggggttctttatctagaaactaaaattggctttgcgttgt Alignment from Spaln_aa2Genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG ggggtgtcaaaggggcaccacagtgcaggcttctcaattgtcacctctagGTTCACTATAAGTTTATAGAGGACTACAACGGTGCTAGCTGCCCATTGAATATAGGAGTGAGAACCTTCTTTACAAGCCCCTGTACAGAG---CCCCGAGTCCAGCTACAACAAGGTGAATTCATACTAGCAATGAGGGGGTTGAGgtaagtggagggggttctttatctagaaactaaaattctctgtccattgg Alignment from Spaln_nt2Genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG ggggtgtcaaaggggcaccacagtgcaggcttctcaattgtcacctctagGTTCACTATAAGTTTATAGAGGACTACAACGGTGCTAGCTGCCCATTGAATATAGGAGTGAGAACCTTCTTTACAAGCCCCTGTAC---AGAGCCCCGAGTCCAGCTACAACAAGGTGAATTCATACTAGCAATGAGGGGGTTGAGgtaagtggagggggttctttatctagaaactaaaattctctgtccattgg Alignment from Pairagon GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG ggggtgtcaaaggggcaccacagtgcaggcttctcaattgtcacctctagGTTCACTATAAGTTTATAGAGGACTACAACGGTGCTAGCTGCCCATTGAATATAGGAGTGAGAACCTTCTTTACAAGCCCCTGTAC---AGAGCCCCGAGTCCAGCTACAACAAGGTGAATTCATACTAGCAATGAGGGGGTTGAGgtaagtggagggggttctttatctagaaactaaaattctctgtccattgg Alignment from Exonerate_protein2genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG ggggtgtcaaaggggcaccacagtgcaggcttctcaattgtcacctctagGTTCACTATAAGTTTATAGAGGACTACAACGGTGCTAGCTGCCCATTGAATATAGGAGTGAGAACCTTCTTTACAAGCCCCTGTACA---GAGCCCCGAGTCCAGCTACAACAAGGTGAATTCATACTAGCAATGAGGGGGTTGAGgtaagtggagggggttctttatctagaaactaaaattctctgtccattgg Alignment from Exonerate_coding2genome AACAGTTGAAGCAAAAGGCAGACAAGAGAGTCAGAAGTGTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCC-TGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG ggggtgtcaaagGGGCACCACAGTGCAGGCTTCTCAATTGTCACCTCTAGGTTCACTATAAGTTTATAGAGGACTACAACGGTGCTAGCTGCCCATTGAATATAGGAGTGAGAACCTTCTTTACAAG-CCCCTGTACAGAG---CCCCGAGTCCAGCTACAACAAGGTGAATTCATACTAGCAATGAGGGGGTTGAGgtaagtggagggggttctttatctagaaactaaaattctctgtccattgg Alignment from GeneWise GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG ggggtgtcaaaggggcaccacagtgcaggcttctcaattgtcacctctagGTTCACTATAAGTTTATAGAGGACTACAACGGTGCTAGCTGCCCATTGAATATAGGAGTGAGAACCTTCTTTACAAGCCCCTGTACA---GAGCCCCGAGTCCAGCTACAACAAGGTGAATTCATACTAGCAATGAGGGGGTTGAGgtaagtggagggggttctttatctagaaactaaaattctctgtccattgg #### Zdhhc6_ID11622_7 --> 0 - 0 Original Alignment ATAGAACAGTTGAAGCAAAAGGCAGACAAGAGAGTCAGAAGT ggaaaacagctgagttatagttttctccacatcccttacctttgtgttagGTAGAACAGCCAAAGCAAAAGGTGGACAAGAAAGTCAGAACTgttagtattgtcaaatggcagtaaaatgctgattactgcatggaacctca Alignment from CESAR ATAGAACAGTTGAAGCAAAAGGCAGACAAGAGAGTCAGAAGT ggaaaacagctgagttatagttttctccacatcccttacctttgtgttagGTAGAACAGCCAAAGCAAAAGGTGGACAAGAAAGTCAGAACTgttagtattgtcaaatggcagtaaaatgctgattactgcatggaacctca Alignment from Spaln_aa2Genome ATAGAACAGTTGAAGCAAAAGGCAGACAAGAGAGTCAGAAGT ggaaaacagctgagttatagttttctccacatcccttacctttgtgttagGTAGAACAGCCAAAGCAAAAGGTGGACAAGAAAGTCAGAACTgttagtattgtcaaatggcagtaaaatgctgattactgcatggaacctca Alignment from Spaln_nt2Genome ATAGAACAGTTGAAGCAAAAGGCAGACAAGAGAGTCAGAAGT ggaaaacagctgagttatagttttctccacatcccttacctttgtgttagGTAGAACAGCCAAAGCAAAAGGTGGACAAGAAAGTCAGAACTgttagtattgtcaaatggcagtaaaatgctgattactgcatggaacctca Alignment from Pairagon ATAGAACAGTTGAAGCAAAAGGCAGACAAGAGAGTCAGAAGT ggaaaacagctgagttatagttttctccacatcccttacctttgtgttagGTAGAACAGCCAAAGCAAAAGGTGGACAAGAAAGTCAGAACTgttagtattgtcaaatggcagtaaaatgctgattactgcatggaacctca Alignment from Exonerate_protein2genome ATAGAACAGTTGAAGCAAAAGGCAGACAAGAGAGTCAGAAGT ggaaaacagctgagttatagttttctccacatcccttacctttgtgttagGTAGAACAGCCAAAGCAAAAGGTGGACAAGAAAGTCAGAACTgttagtattgtcaaatggcagtaaaatgctgattactgcatggaacctca Alignment from Exonerate_coding2genome ggaaaacagctgagttatagttttctccacatcccttacctttgtgttaggtagaacagccaaagcaaaaggtggacaagaaagtcagaactgttagtattgtcaaatggcagtaaaatgctgattactgcatggaacctca Alignment from GeneWise ATAGAACAGTTGAAGCAAAAGGCAGACAAGAGAGTCAGAAGT ggaaaacagctgagttatagttttctccacatcccttacctttgtgttagGTAGAACAGCCAAAGCAAAAGGTGGACAAGAAAGTCAGAACTgttagtattgtcaaatggcagtaaaatgctgattactgcatggaacctca #### Zfand5_ID4880_3 --> 1 - 1 Original Alignment aAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACTACCCCGAAAACAGAGGTGTCAGAGCCAg tagttcaaatagtagtttggaggggaagctgccttcatcttcacctacaggAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATCTCAAGAGAGGACAAAATAACCACCCCACAAACTGAAGTAGCAGAGCCAggtaaggtttgtagttatgagtaggaacccaggatgggatgatcagcgtct Alignment from CESAR aAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACTACCCCGAAAACAGAGGTGTCAGAGCCAg tagttcaaatagtagtttggaggggaagctgccttcatcttcacctacaggAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATCTCAAGAGAGGACAAAATAACCACCCCACAAACTGAAGTAGCAGAGCCAggtaaggtttgtagttatgagtaggaacccaggatgggatgatcagcgtct Alignment from Spaln_aa2Genome AAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACTACCCCGAAAACAGAGGTGTCAGAGCCAG tagttcaaatagtagtttggaggggaagctgccttcatcttcacctacagGAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATCTCAAGAGAGGACAAAATAACCACCCCACAAACTGAAGTAGCAGAGCCAGgtaaggtttgtagttatgagtaggaacccaggatgggatgatcagcgtct Alignment from Spaln_nt2Genome AAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACTACCCCGAAAACAGAGGTGTCAGAGCCAG tagttcaaatagtagtttggaggggaagctgccttcatcttcacctacagGAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATCTCAAGAGAGGACAAAATAACCACCCCACAAACTGAAGTAGCAGAGCCAGgtaaggtttgtagttatgagtaggaacccaggatgggatgatcagcgtct Alignment from Pairagon AAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACTACCCCGAAAACAGAGGTGTCAGAGCCAG tagttcaaatagtagtttggaggggaagctgccttcatcttcacctacagGAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATCTCAAGAGAGGACAAAATAACCACCCCACAAACTGAAGTAGCAGAGCCAGgtaaggtttgtagttatgagtaggaacccaggatgggatgatcagcgtct Alignment from Exonerate_protein2genome AAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACTACCCCGAAAACAGAGGTGTCAGAGCCAG tagttcaaatagtagtttggaggggaagctgccttcatcttcacctacagGAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATCTCAAGAGAGGACAAAATAACCACCCCACAAACTGAAGTAGCAGAGCCAGgtaaggtttgtagttatgagtaggaacccaggatgggatgatcagcgtct Alignment from Exonerate_coding2genome AAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACTACCCCGAAAACAGAGGTGTCAGAGCCAG tagttcaaatagtagtttggaggggaagctgccttcatcttcacctacagGAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATCTCAAGAGAGGACAAAATAACCACCCCACAAACTGAAGTAGCAGAGCCAGgtaaggtttgtagttatgagtaggaacccaggatgggatgatcagcgtct Alignment from GeneWise AAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACTACCCCGAAAACAGAGGTGTCAGAGCCAG tagttcaaatagtagtttggaggggaagctgccttcatcttcacctacagGAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATCTCAAGAGAGGACAAAATAACCACCCCACAAACTGAAGTAGCAGAGCCAGgtaaggtttgtagttatgagtaggaacccaggatgggatgatcagcgtct #### Zfp91_ID3459_7 --> 1 - 2 Original Alignment gAGAGGGAGAAGGCGAAAAGATGACAAAAGTCCGCGGTTACCCAAAAGGag tgtataactctggttggtcttgagtaagcccatgaacacggcttgctcagaCGAGGGCATAGGCGAAAAGAGGACCTAGGACCTCAGTTAACCAATAGAaggtaggaagggctttctcctttgaactttacacatttgtgcggtcatattt Alignment from CESAR gAGAGGGAGAAGGCGAAAAGATGACAAAAGTCCGCGGTTACCCAAAAGGag tgtataactctggttggtcttgagtaagcccatgaacacggcttgctcagaCGAGGGCATAGGCGAAAAGAGGACCTAGGACCTCAGTTAACCAATAGAaggtaggaagggctttctcctttgaactttacacatttgtgcggtcatattt Alignment from Spaln_aa2Genome GAGAGGGAGAAGGCGAAAAGATGACAAAAGTCCGCGGTTACCCAAAAGGAG tgtataactctggttggtcttgagtaagcccatgaacacggcttgctcagACGAGGGCATAGGCGAAAAGAGGACCTAGGACCTCAGTTAACCAATAGAAGgtaggaagggctttctcctttgaactttacacatttgtgcggtcatattt Alignment from Spaln_nt2Genome GAGAGGGAGAAGGCGAAAAGATGACAAAAGTCCGCGGTTACCCAAAAGGAG tgtataactctggttggtcttgagtaagcccatgaacacggcttgctcagACGAGGGCATAGGCGAAAAGAGGACCTAGGACCTCAGTTAACCAATAGAAGgtaggaagggctttctcctttgaactttacacatttgtgcggtcatattt Alignment from Pairagon GAGAGGGAGAAGGCGAAAAGATGACAAAAGTCCGCGGTTACCCAAAAGGAG tgtataactctggttggtcttgagtaagcccatgaacacggcttgctcagACGAGGGCATAGGCGAAAAGAGGACCTAGGACCTCAGTTAACCAATAGAAGgtaggaagggctttctcctttgaactttacacatttgtgcggtcatattt Alignment from Exonerate_protein2genome tgtataactctggttggtcttgagtaagcccatgaacacggcttgctcagacgagggcataggcgaaaagaggacctaggacctcagttaaccaatagaaggtaggaagggctttctcctttgaactttacacatttgtgcggtcatattt Alignment from Exonerate_coding2genome tgtataactctggttggtcttgagtaagcccatgaacacggcttgctcagacgagggcataggcgaaaagaggacctaggacctcagttaaccaatagaaggtaggaagggctttctcctttgaactttacacatttgtgcggtcatattt Alignment from GeneWise GAGAGGGAGAAGGCGAAAAGATGACAAAAGTCCGCGGTTACCCAAAAGGAG tgtataactctggttggtcttgagtaagcccatgaacacggcttgctcagACGAGGGCATAGGCGAAAAGAGGACCTAGGACCTCAGTTAACCAATAGAAGgtaggaagggctttctcctttgaactttacacatttgtgcggtcatattt #### Zfyve27_ID8423_5 --> 1 - 1 Original Alignment gTTCTATGGCGCTCTTCTGGGCATGGTGTGCATGCTCTACCTGCTACCGCTCTGCTGGGTCCTCGCCCTGTTAAATAGCACACTCTTCCTGGGAAATGGGGACTTCTTCCGAg ccatccctattgtcacaaattacaagagcttcactcctgtcctcctgcaggTTCTATGATGCTCTACTTGGAATGGTTTGCACACTATATCTGCTTCCCCTTTGCTGGGTCCTTGCCCTGCTAAATAGTTCACTCTTCTTGGGCAATGGGGACTTCTTCCGGggtgggccctgtgccgaggatttttctgggaagcctagaatgaatttacaa Alignment from CESAR gTTCTATGGCGCTCTTCTGGGCATGGTGTGCATGCTCTACCTGCTACCGCTCTGCTGGGTCCTCGCCCTGTTAAATAGCACACTCTTCCTGGGAAATGGGGACTTCTTCCGAg ccatccctattgtcacaaattacaagagcttcactcctgtcctcctgcaggTTCTATGATGCTCTACTTGGAATGGTTTGCACACTATATCTGCTTCCCCTTTGCTGGGTCCTTGCCCTGCTAAATAGTTCACTCTTCTTGGGCAATGGGGACTTCTTCCGGggtgggccctgtgccgaggatttttctgggaagcctagaatgaatttacaa Alignment from Spaln_aa2Genome GTTCTATGGCGCTCTTCTGGGCATGGTGTGCATGCTCTACCTGCTACCGCTCTGCTGGGTCCTCGCCCTGTTAAATAGCACACTCTTCCTGGGAAATGGGGACTTCTTCCGAG ccatccctattgtcacaaattacaagagcttcactcctgtcctcctgcagGTTCTATGATGCTCTACTTGGAATGGTTTGCACACTATATCTGCTTCCCCTTTGCTGGGTCCTTGCCCTGCTAAATAGTTCACTCTTCTTGGGCAATGGGGACTTCTTCCGGGgtgggccctgtgccgaggatttttctgggaagcctagaatgaatttacaa Alignment from Spaln_nt2Genome GTTCTATGGCGCTCTTCTGGGCATGGTGTGCATGCTCTACCTGCTACCGCTCTGCTGGGTCCTCGCCCTGTTAAATAGCACACTCTTCCTGGGAAATGGGGACTTCTTCCGAG ccatccctattgtcacaaattacaagagcttcactcctgtcctcctgcagGTTCTATGATGCTCTACTTGGAATGGTTTGCACACTATATCTGCTTCCCCTTTGCTGGGTCCTTGCCCTGCTAAATAGTTCACTCTTCTTGGGCAATGGGGACTTCTTCCGGGgtgggccctgtgccgaggatttttctgggaagcctagaatgaatttacaa Alignment from Pairagon GTTCTATGGCGCTCTTCTGGGCATGGTGTGCATGCTCTACCTGCTACCGCTCTGCTGGGTCCTCGCCCTGTTAAATAGCACACTCTTCCTGGGAAATGGGGACTTCTTCCGAG ccatccctattgtcacaaattacaagagcttcactcctgtcctcctgcagGTTCTATGATGCTCTACTTGGAATGGTTTGCACACTATATCTGCTTCCCCTTTGCTGGGTCCTTGCCCTGCTAAATAGTTCACTCTTCTTGGGCAATGGGGACTTCTTCCGGGgtgggccctgtgccgaggatttttctgggaagcctagaatgaatttacaa Alignment from Exonerate_protein2genome GTTCTATGGCGCTCTTCTGGGCATGGTGTGCATGCTCTACCTGCTACCGCTCTGCTGGGTCCTCGCCCTGTTAAATAGCACACTCTTCCTGGGAAATGGGGACTTCTTCCGAG ccatccctattgtcacaaattacaagagcttcactcctgtcctcctgcagGTTCTATGATGCTCTACTTGGAATGGTTTGCACACTATATCTGCTTCCCCTTTGCTGGGTCCTTGCCCTGCTAAATAGTTCACTCTTCTTGGGCAATGGGGACTTCTTCCGGGgtgggccctgtgccgaggatttttctgggaagcctagaatgaatttacaa Alignment from Exonerate_coding2genome GTTCTATGGCGCTCTTCTGGGCATGGTGTGCATGCTCTACCTGCTACCGCTCTGCTGGGTCCTCGCCCTGTTAAATAGCACACTCTTCCTGGGAAATGGGGACTTCTTCCGAG ccatccctattgtcacaaattacaagagcttcactcctgtcctcctgcagGTTCTATGATGCTCTACTTGGAATGGTTTGCACACTATATCTGCTTCCCCTTTGCTGGGTCCTTGCCCTGCTAAATAGTTCACTCTTCTTGGGCAATGGGGACTTCTTCCGGGgtgggccctgtgccgaggatttttctgggaagcctagaatgaatttacaa Alignment from GeneWise GTTCTATGGCGCTCTTCTGGGCATGGTGTGCATGCTCTACCTGCTACCGCTCTGCTGGGTCCTCGCCCTGTTAAATAGCACACTCTTCCTGGGAAATGGGGACTTCTTCCGAG ccatccctattgtcacaaattacaagagcttcactcctgtcctcctgcagGTTCTATGATGCTCTACTTGGAATGGTTTGCACACTATATCTGCTTCCCCTTTGCTGGGTCCTTGCCCTGCTAAATAGTTCACTCTTCTTGGGCAATGGGGACTTCTTCCGGGgtgggccctgtgccgaggatttttctgggaagcctagaatgaatttacaa #### Zfyve27_ID8425_7 --> 0 - 0 Original Alignment GACCTCACGCCAGGCAGTGTGGAGGAAGCTGAGGAGGCTGAGCCAGATGAGGAGTTCAAAGATGCAATTGAG gctagagaattccagttctccctccataagaatctgtggtttttttccagGACCTTACCTCAGGCAGTGTAGAGCAAGCAGAGGAAGCTGAACCAGATGAGGAGTTCAGGGATGCCATTGAGgtgagactggcttaccctgccctgtcctactgccaaaccatataggtgta Alignment from CESAR GACCTCACGCCAGGCAGTGTGGAGGAAGCTGAGGAGGCTGAGCCAGATGAGGAGTTCAAAGATGCAATTGAG gctagagaattccagttctccctccataagaatctgtggtttttttccagGACCTTACCTCAGGCAGTGTAGAGCAAGCAGAGGAAGCTGAACCAGATGAGGAGTTCAGGGATGCCATTGAGgtgagactggcttaccctgccctgtcctactgccaaaccatataggtgta Alignment from Spaln_aa2Genome GACCTCACGCCAGGCAGTGTGGAGGAAGCTGAGGAGGCTGAGCCAGATGAGGAGTTCAAAGATGCAATTGAG gctagagaattccagttctccctccataagaatctgtggtttttttccagGACCTTACCTCAGGCAGTGTAGAGCAAGCAGAGGAAGCTGAACCAGATGAGGAGTTCAGGGATGCCATTGAGgtgagactggcttaccctgccctgtcctactgccaaaccatataggtgta Alignment from Spaln_nt2Genome GACCTCACGCCAGGCAGTGTGGAGGAAGCTGAGGAGGCTGAGCCAGATGAGGAGTTCAAAGATGCAATTGAG gctagagaattccagttctccctccataagaatctgtggtttttttccagGACCTTACCTCAGGCAGTGTAGAGCAAGCAGAGGAAGCTGAACCAGATGAGGAGTTCAGGGATGCCATTGAGgtgagactggcttaccctgccctgtcctactgccaaaccatataggtgta Alignment from Pairagon GCTCGCCTGCCCCCACACCCACCGAGGACCTCACGCCAGGCAGTGTGGAGGAAGCTGAGGAGGCTGAGCCAGATGAGGAGTTCAAAGATGCAATTGAG gctagagaattccagttctccctccataagaatctgtggtttttttccag--------------------------GACCTTACCTCAGGCAGTGTAGAGCAAGCAGAGGAAGCTGAACCAGATGAGGAGTTCAGGGATGCCATTGAGgtgagactggcttaccctgccctgtcctactgccaaaccatataggtgta Alignment from Exonerate_protein2genome GACCTCACGCCAGGCAGTGTGGAGGAAGCTGAGGAGGCTGAGCCAGATGAGGAGTTCAAAGATGCAATTGAG gctagagaattccagttctccctccataagaatctgtggtttttttccagGACCTTACCTCAGGCAGTGTAGAGCAAGCAGAGGAAGCTGAACCAGATGAGGAGTTCAGGGATGCCATTGAGgtgagactggcttaccctgccctgtcctactgccaaaccatataggtgta Alignment from Exonerate_coding2genome GACCTCACGCCAGGCAGTGTGGAGGAAGCTGAGGAGGCTGAGCCAGATGAGGAGTTCAAAGATGCAATTGAG gctagagaattccagttctccctccataagaatctgtggtttttttccagGACCTTACCTCAGGCAGTGTAGAGCAAGCAGAGGAAGCTGAACCAGATGAGGAGTTCAGGGATGCCATTGAGgtgagactggcttaccctgccctgtcctactgccaaaccatataggtgta Alignment from GeneWise GACCTCACGCCAGGCAGTGTGGAGGAAGCTGAGGAGGCTGAGCCAGATGAGGAGTTCAAAGATGCAATTGAG gctagagaattccagttctccctccataagaatctgtggtttttttccagGACCTTACCTCAGGCAGTGTAGAGCAAGCAGAGGAAGCTGAACCAGATGAGGAGTTCAGGGATGCCATTGAGgtgagactggcttaccctgccctgtcctactgccaaaccatataggtgta ####